Citrus Sinensis ID: 017718
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
|---|
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Close Homologs for Annotation Transfer
Close Homologs in SWISS-PROT Database Detected by BLAST 
Original result of BLAST against SWISS-PROT Database
| ID | Alignment graph | Length |
Definition |
RBH(Q2H) |
RBH(H2Q) |
Q cover |
H cover |
Identity |
E-value |
| Query | 367 | 2.2.26 [Sep-21-2011] | |||||||
| Q9LRR9 | 367 | Peroxisomal (S)-2-hydroxy | yes | no | 0.989 | 0.989 | 0.902 | 0.0 | |
| P05414 | 369 | Peroxisomal (S)-2-hydroxy | N/A | no | 0.994 | 0.989 | 0.880 | 0.0 | |
| Q9LRS0 | 367 | Peroxisomal (S)-2-hydroxy | yes | no | 0.989 | 0.989 | 0.880 | 0.0 | |
| O49506 | 368 | Peroxisomal (S)-2-hydroxy | no | no | 0.967 | 0.964 | 0.854 | 0.0 | |
| Q10CE4 | 369 | Peroxisomal (S)-2-hydroxy | yes | no | 0.997 | 0.991 | 0.848 | 1e-180 | |
| B8AKX6 | 369 | Peroxisomal (S)-2-hydroxy | N/A | no | 0.997 | 0.991 | 0.848 | 1e-180 | |
| Q6YT73 | 369 | Peroxisomal (S)-2-hydroxy | no | no | 0.972 | 0.967 | 0.858 | 1e-178 | |
| B8B7C5 | 369 | Peroxisomal (S)-2-hydroxy | N/A | no | 0.972 | 0.967 | 0.858 | 1e-178 | |
| Q7FAS1 | 367 | Peroxisomal (S)-2-hydroxy | no | no | 0.972 | 0.972 | 0.813 | 1e-169 | |
| B8AUI3 | 367 | Peroxisomal (S)-2-hydroxy | N/A | no | 0.972 | 0.972 | 0.813 | 1e-169 |
| >sp|Q9LRR9|GLO1_ARATH Peroxisomal (S)-2-hydroxy-acid oxidase GLO1 OS=Arabidopsis thaliana GN=GLO1 PE=1 SV=1 | Back alignment and function desciption |
|---|
Score = 662 bits (1709), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 332/368 (90%), Positives = 351/368 (95%), Gaps = 5/368 (1%)
Query: 3 EITNVMEYEAIAKEKLPKMVFDYYASGAEDQWTLQENRNAFSRILFRPRILIDVSKIDMN 62
EITNV EY+AIAK+KLPKMV+DYYASGAEDQWTLQENRNAF+RILFRPRILIDVSKIDM
Sbjct: 2 EITNVTEYDAIAKQKLPKMVYDYYASGAEDQWTLQENRNAFARILFRPRILIDVSKIDMT 61
Query: 63 TTVLGFKISMPIMIAPTAMQKMAHPEGEYATARAASAAGTIMTLSSWSTSSVEEVASTGP 122
TTVLGFKISMPIM+APTAMQKMAHP+GEYATARAASAAGTIMTLSSW+TSSVEEVASTGP
Sbjct: 62 TTVLGFKISMPIMVAPTAMQKMAHPDGEYATARAASAAGTIMTLSSWATSSVEEVASTGP 121
Query: 123 GIRFFQLYVYKDRNVVAQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLTLK 182
GIRFFQLYVYK+RNVV QLVRRAERAGFKAIALTVDTPRLGRRE+DIKNRFTLPP LTLK
Sbjct: 122 GIRFFQLYVYKNRNVVEQLVRRAERAGFKAIALTVDTPRLGRRESDIKNRFTLPPNLTLK 181
Query: 183 NFQGLDLGKMDEANDSGLAAYVAGQIDRSLSWK---WLQTITKLPILVKGVLTAEDARIA 239
NF+GLDLGKMDEANDSGLA+YVAGQIDR+LSWK WLQTITKLPILVKGVLT EDARIA
Sbjct: 182 NFEGLDLGKMDEANDSGLASYVAGQIDRTLSWKDVQWLQTITKLPILVKGVLTGEDARIA 241
Query: 240 VQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALG 299
+QAGAAGIIVSNHGARQLDYVPATI ALEEVVKATQGRIPVFLDGGVRRGTDVFKALALG
Sbjct: 242 IQAGAAGIIVSNHGARQLDYVPATISALEEVVKATQGRIPVFLDGGVRRGTDVFKALALG 301
Query: 300 ASGIFIGRPVVYSLAAEGEKGVRRVLEMLREEFELAMALSGCRSLKEITRDHIVTEWDAS 359
ASGIFIGRPVV+SLAAEGE GVR+VL+MLR+EFEL MALSGCRSLKEI+R+HI TEWD
Sbjct: 302 ASGIFIGRPVVFSLAAEGEAGVRKVLQMLRDEFELTMALSGCRSLKEISRNHITTEWDT- 360
Query: 360 LPRPVPRL 367
PRP RL
Sbjct: 361 -PRPSARL 367
|
Arabidopsis thaliana (taxid: 3702) EC: 1EC: .EC: 1EC: .EC: 3EC: .EC: 1EC: 5 |
| >sp|P05414|GOX_SPIOL Peroxisomal (S)-2-hydroxy-acid oxidase OS=Spinacia oleracea PE=1 SV=1 | Back alignment and function description |
|---|
Score = 653 bits (1685), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 324/368 (88%), Positives = 346/368 (94%), Gaps = 3/368 (0%)
Query: 3 EITNVMEYEAIAKEKLPKMVFDYYASGAEDQWTLQENRNAFSRILFRPRILIDVSKIDMN 62
EITNV EYEAIAK+KLPKMV+DYYASGAEDQWTL ENRNAFSRILFRPRILIDV+ IDM
Sbjct: 2 EITNVNEYEAIAKQKLPKMVYDYYASGAEDQWTLAENRNAFSRILFRPRILIDVTNIDMT 61
Query: 63 TTVLGFKISMPIMIAPTAMQKMAHPEGEYATARAASAAGTIMTLSSWSTSSVEEVASTGP 122
TT+LGFKISMPIMIAPTAMQKMAHPEGEYATARAASAAGTIMTLSSW+TSSVEEVASTGP
Sbjct: 62 TTILGFKISMPIMIAPTAMQKMAHPEGEYATARAASAAGTIMTLSSWATSSVEEVASTGP 121
Query: 123 GIRFFQLYVYKDRNVVAQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLTLK 182
GIRFFQLYVYKDRNVVAQLVRRAERAGFKAIALTVDTPRLGRREADIKNRF LPPFLTLK
Sbjct: 122 GIRFFQLYVYKDRNVVAQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFVLPPFLTLK 181
Query: 183 NFQGLDLGKMDEANDSGLAAYVAGQIDRSLSWK---WLQTITKLPILVKGVLTAEDARIA 239
NF+G+DLGKMD+ANDSGL++YVAGQIDRSLSWK WLQTIT LPILVKGV+TAEDAR+A
Sbjct: 182 NFEGIDLGKMDKANDSGLSSYVAGQIDRSLSWKDVAWLQTITSLPILVKGVITAEDARLA 241
Query: 240 VQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALG 299
VQ GAAGIIVSNHGARQLDYVPATIMALEEVVKA QGRIPVFLDGGVRRGTDVFKALALG
Sbjct: 242 VQHGAAGIIVSNHGARQLDYVPATIMALEEVVKAAQGRIPVFLDGGVRRGTDVFKALALG 301
Query: 300 ASGIFIGRPVVYSLAAEGEKGVRRVLEMLREEFELAMALSGCRSLKEITRDHIVTEWDAS 359
A+G+FIGRPVV+SLAAEGE GV++VL+M+R+EFEL MALSGCRSLKEI+R HI +WD
Sbjct: 302 AAGVFIGRPVVFSLAAEGEAGVKKVLQMMRDEFELTMALSGCRSLKEISRSHIAADWDGP 361
Query: 360 LPRPVPRL 367
R V RL
Sbjct: 362 SSRAVARL 369
|
Spinacia oleracea (taxid: 3562) EC: 1 EC: . EC: 1 EC: . EC: 3 EC: . EC: 1 EC: 5 |
| >sp|Q9LRS0|GLO2_ARATH Peroxisomal (S)-2-hydroxy-acid oxidase GLO2 OS=Arabidopsis thaliana GN=GLO2 PE=1 SV=1 | Back alignment and function description |
|---|
Score = 649 bits (1674), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 324/368 (88%), Positives = 348/368 (94%), Gaps = 5/368 (1%)
Query: 3 EITNVMEYEAIAKEKLPKMVFDYYASGAEDQWTLQENRNAFSRILFRPRILIDVSKIDMN 62
EITNV EY+AIAK KLPKMV+DYYASGAEDQWTLQENRNAF+RILFRPRILIDV+KIDM
Sbjct: 2 EITNVTEYDAIAKAKLPKMVYDYYASGAEDQWTLQENRNAFARILFRPRILIDVNKIDMA 61
Query: 63 TTVLGFKISMPIMIAPTAMQKMAHPEGEYATARAASAAGTIMTLSSWSTSSVEEVASTGP 122
TTVLGFKISMPIM+APTA QKMAHP+GEYATARAASAAGTIMTLSSW+TSSVEEVASTGP
Sbjct: 62 TTVLGFKISMPIMVAPTAFQKMAHPDGEYATARAASAAGTIMTLSSWATSSVEEVASTGP 121
Query: 123 GIRFFQLYVYKDRNVVAQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLTLK 182
GIRFFQLYVYK+R VV QLVRRAE+AGFKAIALTVDTPRLGRRE+DIKNRFTLPP LTLK
Sbjct: 122 GIRFFQLYVYKNRKVVEQLVRRAEKAGFKAIALTVDTPRLGRRESDIKNRFTLPPNLTLK 181
Query: 183 NFQGLDLGKMDEANDSGLAAYVAGQIDRSLSWK---WLQTITKLPILVKGVLTAEDARIA 239
NF+GLDLGKMDEANDSGLA+YVAGQIDR+LSWK WLQTIT +PILVKGVLT EDARIA
Sbjct: 182 NFEGLDLGKMDEANDSGLASYVAGQIDRTLSWKDIQWLQTITNMPILVKGVLTGEDARIA 241
Query: 240 VQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALG 299
+QAGAAGIIVSNHGARQLDYVPATI ALEEVVKATQGR+PVFLDGGVRRGTDVFKALALG
Sbjct: 242 IQAGAAGIIVSNHGARQLDYVPATISALEEVVKATQGRVPVFLDGGVRRGTDVFKALALG 301
Query: 300 ASGIFIGRPVVYSLAAEGEKGVRRVLEMLREEFELAMALSGCRSLKEITRDHIVTEWDAS 359
ASGIFIGRPVV++LAAEGE GV++VL+MLR+EFEL MALSGCRSL EITR+HIVTEWD
Sbjct: 302 ASGIFIGRPVVFALAAEGEAGVKKVLQMLRDEFELTMALSGCRSLSEITRNHIVTEWDT- 360
Query: 360 LPRPVPRL 367
PR +PRL
Sbjct: 361 -PRHLPRL 367
|
Arabidopsis thaliana (taxid: 3702) EC: 1 EC: . EC: 1 EC: . EC: 3 EC: . EC: 1 EC: 5 |
| >sp|O49506|GLO5_ARATH Peroxisomal (S)-2-hydroxy-acid oxidase GLO5 OS=Arabidopsis thaliana GN=GLO5 PE=1 SV=1 | Back alignment and function description |
|---|
Score = 636 bits (1641), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 306/358 (85%), Positives = 336/358 (93%), Gaps = 3/358 (0%)
Query: 3 EITNVMEYEAIAKEKLPKMVFDYYASGAEDQWTLQENRNAFSRILFRPRILIDVSKIDMN 62
EITNVMEYE IAKEKLPKMV+DYYASGAEDQWTLQENRNAFSRILFRPRILIDVSKID++
Sbjct: 2 EITNVMEYEKIAKEKLPKMVYDYYASGAEDQWTLQENRNAFSRILFRPRILIDVSKIDVS 61
Query: 63 TTVLGFKISMPIMIAPTAMQKMAHPEGEYATARAASAAGTIMTLSSWSTSSVEEVASTGP 122
TTVLGF ISMPIMIAPTAMQKMAHP+GE ATARA SAAGTIMTLSSW+T SVEEVASTGP
Sbjct: 62 TTVLGFNISMPIMIAPTAMQKMAHPDGELATARATSAAGTIMTLSSWATCSVEEVASTGP 121
Query: 123 GIRFFQLYVYKDRNVVAQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLTLK 182
GIRFFQLYVYKDRNVV QLV+RAE AGFKAIALTVDTPRLGRRE+DIKNRF LP LTLK
Sbjct: 122 GIRFFQLYVYKDRNVVIQLVKRAEEAGFKAIALTVDTPRLGRRESDIKNRFALPRGLTLK 181
Query: 183 NFQGLDLGKMDEANDSGLAAYVAGQIDRSLSW---KWLQTITKLPILVKGVLTAEDARIA 239
NF+GLDLGK+D+ NDSGLA+YVAGQ+D+SLSW KWLQ+IT LPILVKGV+TAEDARIA
Sbjct: 182 NFEGLDLGKIDKTNDSGLASYVAGQVDQSLSWKDIKWLQSITSLPILVKGVITAEDARIA 241
Query: 240 VQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALG 299
V+ GAAGIIVSNHGARQLDYVPATI+ALEEVVKA +GRIPVFLDGGVRRGTDVFKALALG
Sbjct: 242 VEYGAAGIIVSNHGARQLDYVPATIVALEEVVKAVEGRIPVFLDGGVRRGTDVFKALALG 301
Query: 300 ASGIFIGRPVVYSLAAEGEKGVRRVLEMLREEFELAMALSGCRSLKEITRDHIVTEWD 357
ASG+F+GRP ++SLAA+GE GVR++L+MLR+EFEL MALSGCRSL+EI+R HI T+WD
Sbjct: 302 ASGVFVGRPSLFSLAADGEAGVRKMLQMLRDEFELTMALSGCRSLREISRTHIKTDWD 359
|
Arabidopsis thaliana (taxid: 3702) EC: 1 EC: . EC: 1 EC: . EC: 3 EC: . EC: 1 EC: 5 |
| >sp|Q10CE4|GLO1_ORYSJ Peroxisomal (S)-2-hydroxy-acid oxidase GLO1 OS=Oryza sativa subsp. japonica GN=GLO1 PE=1 SV=1 | Back alignment and function description |
|---|
Score = 630 bits (1624), Expect = e-180, Method: Compositional matrix adjust.
Identities = 314/370 (84%), Positives = 343/370 (92%), Gaps = 4/370 (1%)
Query: 1 MGEITNVMEYEAIAKEKLPKMVFDYYASGAEDQWTLQENRNAFSRILFRPRILIDVSKID 60
MGEITNVMEY+AIAK+KLPKM++DYYASGAED+WTL+ENR AFSRILFRPRILIDVSKID
Sbjct: 1 MGEITNVMEYQAIAKQKLPKMIYDYYASGAEDEWTLKENREAFSRILFRPRILIDVSKID 60
Query: 61 MNTTVLGFKISMPIMIAPTAMQKMAHPEGEYATARAASAAGTIMTLSSWSTSSVEEVAST 120
M+ TVLGFKISMPIMIAP+AMQKMAHP+GEYATARAASAAGTIMTLSSW+TSSVEEVAST
Sbjct: 61 MSATVLGFKISMPIMIAPSAMQKMAHPDGEYATARAASAAGTIMTLSSWATSSVEEVAST 120
Query: 121 GPGIRFFQLYVYKDRNVVAQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLT 180
GPGIRFFQLYVYKDRNVV QLVRRAERAGFKAIALTVDTPRLGRREADIKNRF LPP+LT
Sbjct: 121 GPGIRFFQLYVYKDRNVVEQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFVLPPYLT 180
Query: 181 LKNFQGLDLGKMDEANDSGLAAYVAGQIDRSLSW---KWLQTITKLPILVKGVLTAEDAR 237
LKNF+GLDL +MD++NDSGLA+YVAGQIDR+LSW KWLQ+IT LPILVKGV+TAEDAR
Sbjct: 181 LKNFEGLDLAEMDKSNDSGLASYVAGQIDRTLSWKDVKWLQSITSLPILVKGVITAEDAR 240
Query: 238 IAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALA 297
+AV +GAAGIIVSNHGARQLDYVPATI ALEEVV A GRIPV+LDGGVRRGTDVFKALA
Sbjct: 241 LAVHSGAAGIIVSNHGARQLDYVPATISALEEVVTAAAGRIPVYLDGGVRRGTDVFKALA 300
Query: 298 LGASGIFIGRPVVYSLAAEGEKGVRRVLEMLREEFELAMALSGCRSLKEITRDHIVTEWD 357
LGA+G+FIGRPVV++LAAEGE GVR VL M+REEFEL MALSGC SL +ITR HI T+ D
Sbjct: 301 LGAAGVFIGRPVVFALAAEGEAGVRNVLRMMREEFELTMALSGCTSLADITRAHIYTDAD 360
Query: 358 ASLPRPVPRL 367
L RP PRL
Sbjct: 361 -RLARPFPRL 369
|
Photorespiratory enzyme that can exert a strong regulation over photosynthesis, possibly through a feed-back inhibition on Rubisco activase. Not required for oxalate accumulation. Oryza sativa subsp. japonica (taxid: 39947) EC: 1 EC: . EC: 1 EC: . EC: 3 EC: . EC: 1 EC: 5 |
| >sp|B8AKX6|GLO1_ORYSI Peroxisomal (S)-2-hydroxy-acid oxidase GLO1 OS=Oryza sativa subsp. indica GN=GLO1 PE=3 SV=1 | Back alignment and function description |
|---|
Score = 630 bits (1624), Expect = e-180, Method: Compositional matrix adjust.
Identities = 314/370 (84%), Positives = 343/370 (92%), Gaps = 4/370 (1%)
Query: 1 MGEITNVMEYEAIAKEKLPKMVFDYYASGAEDQWTLQENRNAFSRILFRPRILIDVSKID 60
MGEITNVMEY+AIAK+KLPKM++DYYASGAED+WTL+ENR AFSRILFRPRILIDVSKID
Sbjct: 1 MGEITNVMEYQAIAKQKLPKMIYDYYASGAEDEWTLKENREAFSRILFRPRILIDVSKID 60
Query: 61 MNTTVLGFKISMPIMIAPTAMQKMAHPEGEYATARAASAAGTIMTLSSWSTSSVEEVAST 120
M+ TVLGFKISMPIMIAP+AMQKMAHP+GEYATARAASAAGTIMTLSSW+TSSVEEVAST
Sbjct: 61 MSATVLGFKISMPIMIAPSAMQKMAHPDGEYATARAASAAGTIMTLSSWATSSVEEVAST 120
Query: 121 GPGIRFFQLYVYKDRNVVAQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLT 180
GPGIRFFQLYVYKDRNVV QLVRRAERAGFKAIALTVDTPRLGRREADIKNRF LPP+LT
Sbjct: 121 GPGIRFFQLYVYKDRNVVEQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFVLPPYLT 180
Query: 181 LKNFQGLDLGKMDEANDSGLAAYVAGQIDRSLSW---KWLQTITKLPILVKGVLTAEDAR 237
LKNF+GLDL +MD++NDSGLA+YVAGQIDR+LSW KWLQ+IT LPILVKGV+TAEDAR
Sbjct: 181 LKNFEGLDLAEMDKSNDSGLASYVAGQIDRTLSWKDVKWLQSITSLPILVKGVITAEDAR 240
Query: 238 IAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALA 297
+AV +GAAGIIVSNHGARQLDYVPATI ALEEVV A GRIPV+LDGGVRRGTDVFKALA
Sbjct: 241 LAVHSGAAGIIVSNHGARQLDYVPATISALEEVVTAAAGRIPVYLDGGVRRGTDVFKALA 300
Query: 298 LGASGIFIGRPVVYSLAAEGEKGVRRVLEMLREEFELAMALSGCRSLKEITRDHIVTEWD 357
LGA+G+FIGRPVV++LAAEGE GVR VL M+REEFEL MALSGC SL +ITR HI T+ D
Sbjct: 301 LGAAGVFIGRPVVFALAAEGEAGVRNVLRMMREEFELTMALSGCTSLADITRAHIYTDAD 360
Query: 358 ASLPRPVPRL 367
L RP PRL
Sbjct: 361 -RLARPFPRL 369
|
Photorespiratory enzyme that can exert a strong regulation over photosynthesis, possibly through a feed-back inhibition on Rubisco activase. Not required for oxalate accumulation. Oryza sativa subsp. indica (taxid: 39946) EC: 1 EC: . EC: 1 EC: . EC: 3 EC: . EC: 1 EC: 5 |
| >sp|Q6YT73|GLO5_ORYSJ Peroxisomal (S)-2-hydroxy-acid oxidase GLO5 OS=Oryza sativa subsp. japonica GN=GLO5 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 624 bits (1609), Expect = e-178, Method: Compositional matrix adjust.
Identities = 309/360 (85%), Positives = 339/360 (94%), Gaps = 3/360 (0%)
Query: 1 MGEITNVMEYEAIAKEKLPKMVFDYYASGAEDQWTLQENRNAFSRILFRPRILIDVSKID 60
MGEITNV EY+AIAK+KLPKM++DYYASGAED+WTLQENR AF+RILFRPRILIDVSKID
Sbjct: 1 MGEITNVTEYQAIAKQKLPKMIYDYYASGAEDEWTLQENREAFARILFRPRILIDVSKID 60
Query: 61 MNTTVLGFKISMPIMIAPTAMQKMAHPEGEYATARAASAAGTIMTLSSWSTSSVEEVAST 120
M TTVLGFKISMPIMIAP+AMQKMAHP+GEYATARAASAAGTIMTLSSW+TSSVEEVAST
Sbjct: 61 MATTVLGFKISMPIMIAPSAMQKMAHPDGEYATARAASAAGTIMTLSSWATSSVEEVAST 120
Query: 121 GPGIRFFQLYVYKDRNVVAQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLT 180
GPGIRFFQLYVYKDR VV QLVRRAERAGFKAIALTVDTPRLGRREADIKNRF LPPFLT
Sbjct: 121 GPGIRFFQLYVYKDRRVVEQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFVLPPFLT 180
Query: 181 LKNFQGLDLGKMDEANDSGLAAYVAGQIDRSLSW---KWLQTITKLPILVKGVLTAEDAR 237
LKNF+GL+LGKMD+A+DSGLA+YVAGQIDR+LSW KWLQTIT LPILVKGV+TAED R
Sbjct: 181 LKNFEGLELGKMDQASDSGLASYVAGQIDRTLSWKDVKWLQTITTLPILVKGVITAEDTR 240
Query: 238 IAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALA 297
+AV+ GAAGIIVSNHGARQLDYVPATI ALEEVVKA +G++PVFLDGGVRRGTDVFKALA
Sbjct: 241 LAVENGAAGIIVSNHGARQLDYVPATISALEEVVKAARGQLPVFLDGGVRRGTDVFKALA 300
Query: 298 LGASGIFIGRPVVYSLAAEGEKGVRRVLEMLREEFELAMALSGCRSLKEITRDHIVTEWD 357
LGA+G+FIGRPVV+SLAA GE GVR VL+MLR+EFEL MALSGC SL +ITR+H++TE D
Sbjct: 301 LGAAGVFIGRPVVFSLAAAGEAGVRNVLQMLRDEFELTMALSGCTSLADITRNHVITEAD 360
|
Photorespiratory enzyme that can exert a strong regulation over photosynthesis, possibly through a feed-back inhibition on Rubisco activase. Not required for oxalate accumulation. Oryza sativa subsp. japonica (taxid: 39947) EC: 1 EC: . EC: 1 EC: . EC: 3 EC: . EC: 1 EC: 5 |
| >sp|B8B7C5|GLO5_ORYSI Peroxisomal (S)-2-hydroxy-acid oxidase GLO5 OS=Oryza sativa subsp. indica GN=GLO5 PE=3 SV=1 | Back alignment and function description |
|---|
Score = 624 bits (1609), Expect = e-178, Method: Compositional matrix adjust.
Identities = 309/360 (85%), Positives = 339/360 (94%), Gaps = 3/360 (0%)
Query: 1 MGEITNVMEYEAIAKEKLPKMVFDYYASGAEDQWTLQENRNAFSRILFRPRILIDVSKID 60
MGEITNV EY+AIAK+KLPKM++DYYASGAED+WTLQENR AF+RILFRPRILIDVSKID
Sbjct: 1 MGEITNVTEYQAIAKQKLPKMIYDYYASGAEDEWTLQENREAFARILFRPRILIDVSKID 60
Query: 61 MNTTVLGFKISMPIMIAPTAMQKMAHPEGEYATARAASAAGTIMTLSSWSTSSVEEVAST 120
M TTVLGFKISMPIMIAP+AMQKMAHP+GEYATARAASAAGTIMTLSSW+TSSVEEVAST
Sbjct: 61 MATTVLGFKISMPIMIAPSAMQKMAHPDGEYATARAASAAGTIMTLSSWATSSVEEVAST 120
Query: 121 GPGIRFFQLYVYKDRNVVAQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLT 180
GPGIRFFQLYVYKDR VV QLVRRAERAGFKAIALTVDTPRLGRREADIKNRF LPPFLT
Sbjct: 121 GPGIRFFQLYVYKDRRVVEQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFVLPPFLT 180
Query: 181 LKNFQGLDLGKMDEANDSGLAAYVAGQIDRSLSW---KWLQTITKLPILVKGVLTAEDAR 237
LKNF+GL+LGKMD+A+DSGLA+YVAGQIDR+LSW KWLQTIT LPILVKGV+TAED R
Sbjct: 181 LKNFEGLELGKMDQASDSGLASYVAGQIDRTLSWKDVKWLQTITTLPILVKGVITAEDTR 240
Query: 238 IAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALA 297
+AV+ GAAGIIVSNHGARQLDYVPATI ALEEVVKA +G++PVFLDGGVRRGTDVFKALA
Sbjct: 241 LAVENGAAGIIVSNHGARQLDYVPATISALEEVVKAARGQLPVFLDGGVRRGTDVFKALA 300
Query: 298 LGASGIFIGRPVVYSLAAEGEKGVRRVLEMLREEFELAMALSGCRSLKEITRDHIVTEWD 357
LGA+G+FIGRPVV+SLAA GE GVR VL+MLR+EFEL MALSGC SL +ITR+H++TE D
Sbjct: 301 LGAAGVFIGRPVVFSLAAAGEAGVRNVLQMLRDEFELTMALSGCTSLADITRNHVITEAD 360
|
Photorespiratory enzyme that can exert a strong regulation over photosynthesis, possibly through a feed-back inhibition on Rubisco activase. Not required for oxalate accumulation. Oryza sativa subsp. indica (taxid: 39946) EC: 1 EC: . EC: 1 EC: . EC: 3 EC: . EC: 1 EC: 5 |
| >sp|Q7FAS1|GLO3_ORYSJ Peroxisomal (S)-2-hydroxy-acid oxidase GLO3 OS=Oryza sativa subsp. japonica GN=GLO3 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 595 bits (1533), Expect = e-169, Method: Compositional matrix adjust.
Identities = 293/360 (81%), Positives = 324/360 (90%), Gaps = 3/360 (0%)
Query: 1 MGEITNVMEYEAIAKEKLPKMVFDYYASGAEDQWTLQENRNAFSRILFRPRILIDVSKID 60
M ITNV EYE +AK+KLPKM++DYYASGAEDQWTL+ENR AFSRILFRPRILIDVS+I+
Sbjct: 1 MELITNVSEYEQLAKQKLPKMIYDYYASGAEDQWTLKENREAFSRILFRPRILIDVSRIN 60
Query: 61 MNTTVLGFKISMPIMIAPTAMQKMAHPEGEYATARAASAAGTIMTLSSWSTSSVEEVAST 120
M T VLGF ISMPIMIAP+AMQKMAHPEGE ATARAASAAGTIMTLSSWSTSSVEEV S
Sbjct: 61 MATNVLGFNISMPIMIAPSAMQKMAHPEGELATARAASAAGTIMTLSSWSTSSVEEVNSA 120
Query: 121 GPGIRFFQLYVYKDRNVVAQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLT 180
PGIRFFQLYVYKDRN+V QLVRRAE AGFKAIALTVDTPRLGRREADIKNRF LPP L
Sbjct: 121 APGIRFFQLYVYKDRNIVRQLVRRAELAGFKAIALTVDTPRLGRREADIKNRFNLPPHLV 180
Query: 181 LKNFQGLDLGKMDEANDSGLAAYVAGQIDRSLSW---KWLQTITKLPILVKGVLTAEDAR 237
LKNF+ LDLGKMD+ NDSGLA+YVA Q+DRSLSW KWLQTIT LPILVKGV+TAED R
Sbjct: 181 LKNFEALDLGKMDKTNDSGLASYVASQVDRSLSWTDVKWLQTITSLPILVKGVMTAEDTR 240
Query: 238 IAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALA 297
+AV++GAAGIIVSNHGARQLDYVPATI LEEVV+ +GR+PVFLDGGVRRGTDVFKALA
Sbjct: 241 LAVESGAAGIIVSNHGARQLDYVPATISCLEEVVREAKGRLPVFLDGGVRRGTDVFKALA 300
Query: 298 LGASGIFIGRPVVYSLAAEGEKGVRRVLEMLREEFELAMALSGCRSLKEITRDHIVTEWD 357
LGASG+FIGRPV++SLA +GE GVR+VL+MLR+E EL MALSGC SL EITR+H++T+ D
Sbjct: 301 LGASGVFIGRPVLFSLAVDGEAGVRKVLQMLRDELELTMALSGCTSLAEITRNHVITDSD 360
|
Photorespiratory enzyme that can exert a strong regulation over photosynthesis, possibly through a feed-back inhibition on Rubisco activase. Not required for oxalate accumulation. Oryza sativa subsp. japonica (taxid: 39947) EC: 1 EC: . EC: 1 EC: . EC: 3 EC: . EC: 1 EC: 5 |
| >sp|B8AUI3|GLO3_ORYSI Peroxisomal (S)-2-hydroxy-acid oxidase GLO3 OS=Oryza sativa subsp. indica GN=GLO3 PE=3 SV=1 | Back alignment and function description |
|---|
Score = 595 bits (1533), Expect = e-169, Method: Compositional matrix adjust.
Identities = 293/360 (81%), Positives = 324/360 (90%), Gaps = 3/360 (0%)
Query: 1 MGEITNVMEYEAIAKEKLPKMVFDYYASGAEDQWTLQENRNAFSRILFRPRILIDVSKID 60
M ITNV EYE +AK+KLPKM++DYYASGAEDQWTL+ENR AFSRILFRPRILIDVS+I+
Sbjct: 1 MELITNVSEYEQLAKQKLPKMIYDYYASGAEDQWTLKENREAFSRILFRPRILIDVSRIN 60
Query: 61 MNTTVLGFKISMPIMIAPTAMQKMAHPEGEYATARAASAAGTIMTLSSWSTSSVEEVAST 120
M T VLGF ISMPIMIAP+AMQKMAHPEGE ATARAASAAGTIMTLSSWSTSSVEEV S
Sbjct: 61 MATNVLGFNISMPIMIAPSAMQKMAHPEGELATARAASAAGTIMTLSSWSTSSVEEVNSA 120
Query: 121 GPGIRFFQLYVYKDRNVVAQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLT 180
PGIRFFQLYVYKDRN+V QLVRRAE AGFKAIALTVDTPRLGRREADIKNRF LPP L
Sbjct: 121 APGIRFFQLYVYKDRNIVRQLVRRAELAGFKAIALTVDTPRLGRREADIKNRFNLPPHLV 180
Query: 181 LKNFQGLDLGKMDEANDSGLAAYVAGQIDRSLSW---KWLQTITKLPILVKGVLTAEDAR 237
LKNF+ LDLGKMD+ NDSGLA+YVA Q+DRSLSW KWLQTIT LPILVKGV+TAED R
Sbjct: 181 LKNFEALDLGKMDKTNDSGLASYVASQVDRSLSWTDVKWLQTITSLPILVKGVMTAEDTR 240
Query: 238 IAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALA 297
+AV++GAAGIIVSNHGARQLDYVPATI LEEVV+ +GR+PVFLDGGVRRGTDVFKALA
Sbjct: 241 LAVESGAAGIIVSNHGARQLDYVPATISCLEEVVREAKGRLPVFLDGGVRRGTDVFKALA 300
Query: 298 LGASGIFIGRPVVYSLAAEGEKGVRRVLEMLREEFELAMALSGCRSLKEITRDHIVTEWD 357
LGASG+FIGRPV++SLA +GE GVR+VL+MLR+E EL MALSGC SL EITR+H++T+ D
Sbjct: 301 LGASGVFIGRPVLFSLAVDGEAGVRKVLQMLRDELELTMALSGCTSLAEITRNHVITDSD 360
|
Photorespiratory enzyme that can exert a strong regulation over photosynthesis, possibly through a feed-back inhibition on Rubisco activase. Not required for oxalate accumulation. Oryza sativa subsp. indica (taxid: 39946) EC: 1 EC: . EC: 1 EC: . EC: 3 EC: . EC: 1 EC: 5 |
Close Homologs in the Non-Redundant Database Detected by BLAST
Original result of BLAST against Nonredundant Database
| GI | Alignment Graph | Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 367 | ||||||
| 147789493 | 371 | hypothetical protein VITISV_005886 [Viti | 0.994 | 0.983 | 0.902 | 0.0 | |
| 189418957 | 369 | glycolate oxidase [Mikania micrantha] | 0.991 | 0.986 | 0.896 | 0.0 | |
| 323650489 | 370 | glycolate oxidase [Mangifera indica] | 1.0 | 0.991 | 0.913 | 0.0 | |
| 297790174 | 369 | hypothetical protein ARALYDRAFT_333142 [ | 0.994 | 0.989 | 0.915 | 0.0 | |
| 304368145 | 371 | glycolate oxidase [Nicotiana benthamiana | 0.994 | 0.983 | 0.906 | 0.0 | |
| 224117076 | 369 | predicted protein [Populus trichocarpa] | 0.994 | 0.989 | 0.904 | 0.0 | |
| 224121620 | 369 | predicted protein [Populus trichocarpa] | 0.994 | 0.989 | 0.910 | 0.0 | |
| 225462096 | 371 | PREDICTED: peroxisomal (S)-2-hydroxy-aci | 0.994 | 0.983 | 0.905 | 0.0 | |
| 359806771 | 371 | peroxisomal (S)-2-hydroxy-acid oxidase G | 0.994 | 0.983 | 0.905 | 0.0 | |
| 366984550 | 367 | glycolate oxidase [Gossypium hirsutum] | 0.989 | 0.989 | 0.904 | 0.0 |
| >gi|147789493|emb|CAN67413.1| hypothetical protein VITISV_005886 [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 684 bits (1764), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 334/370 (90%), Positives = 353/370 (95%), Gaps = 5/370 (1%)
Query: 3 EITNVMEYEAIAKEKLPKMVFDYYASGAEDQWTLQENRNAFSRILFRPRILIDVSKIDMN 62
EITNV EYEAIAK+KLPKMVFDYYASGAEDQWTL +NR+AFS+ILFRPRILIDVSKIDM
Sbjct: 2 EITNVTEYEAIAKQKLPKMVFDYYASGAEDQWTLYQNRHAFSQILFRPRILIDVSKIDMT 61
Query: 63 TTVLGFKISMPIMIAPTAMQKMAHPEGEYATARAASAAGTIMTLSSWSTSSVEEVASTGP 122
TTVLGFKISMPIMIAPTAMQKMAHPEGEYATARAASA GTIMTLSSW+TSSVEEVASTGP
Sbjct: 62 TTVLGFKISMPIMIAPTAMQKMAHPEGEYATARAASATGTIMTLSSWATSSVEEVASTGP 121
Query: 123 GIRFFQLYVYKDRNVVAQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLTLK 182
GIRFFQLYVYKDR+VVAQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLTLK
Sbjct: 122 GIRFFQLYVYKDRHVVAQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLTLK 181
Query: 183 NFQGLDLGKMDEANDSGLAAYVAGQIDRSLSW---KWLQTITKLPILVKGVLTAEDARIA 239
NF+GLDLGKMD+A+DSGLA+YVAGQIDR+LSW KWLQTIT LPILVKGVLTAED R+A
Sbjct: 182 NFEGLDLGKMDKADDSGLASYVAGQIDRTLSWKDVKWLQTITNLPILVKGVLTAEDTRLA 241
Query: 240 VQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALG 299
+QAGAAGIIVSNHGARQLDYVPATIMALEEVVKA QGR+PVFLDGGVRRGTDVFKALALG
Sbjct: 242 IQAGAAGIIVSNHGARQLDYVPATIMALEEVVKAAQGRVPVFLDGGVRRGTDVFKALALG 301
Query: 300 ASGIFIGRPVVYSLAAEGEKGVRRVLEMLREEFELAMALSGCRSLKEITRDHIVTEWDAS 359
ASGIFIGRPVV+SLAAEGE GVR+VL+MLREEFEL MALSGCRSLKEITRDHIVTEW+
Sbjct: 302 ASGIFIGRPVVFSLAAEGEAGVRKVLQMLREEFELTMALSGCRSLKEITRDHIVTEWEVP 361
Query: 360 LP--RPVPRL 367
P RP+PRL
Sbjct: 362 HPGSRPLPRL 371
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|189418957|gb|ACD93720.1| glycolate oxidase [Mikania micrantha] | Back alignment and taxonomy information |
|---|
Score = 680 bits (1755), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 329/367 (89%), Positives = 349/367 (95%), Gaps = 3/367 (0%)
Query: 4 ITNVMEYEAIAKEKLPKMVFDYYASGAEDQWTLQENRNAFSRILFRPRILIDVSKIDMNT 63
+TNV EYEAIAKEKLPKMV+DYYASGAEDQWTL+E+RNAFSRILFRPRILIDVSKI M T
Sbjct: 3 VTNVTEYEAIAKEKLPKMVYDYYASGAEDQWTLEESRNAFSRILFRPRILIDVSKIVMTT 62
Query: 64 TVLGFKISMPIMIAPTAMQKMAHPEGEYATARAASAAGTIMTLSSWSTSSVEEVASTGPG 123
T+LGFKISMPIM+APTAMQKMAHPEGEYATARAAS+AGTIMTLSSW+TSSVEE ASTGPG
Sbjct: 63 TILGFKISMPIMVAPTAMQKMAHPEGEYATARAASSAGTIMTLSSWATSSVEEAASTGPG 122
Query: 124 IRFFQLYVYKDRNVVAQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLTLKN 183
IRFFQLYVYKDRNVVAQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLTLKN
Sbjct: 123 IRFFQLYVYKDRNVVAQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLTLKN 182
Query: 184 FQGLDLGKMDEANDSGLAAYVAGQIDRSLSWK---WLQTITKLPILVKGVLTAEDARIAV 240
F+GLDLGKMDEANDSGLA+YVAGQIDR+LSWK WLQTITK+PILVKGV+TAED R+A+
Sbjct: 183 FEGLDLGKMDEANDSGLASYVAGQIDRTLSWKDVQWLQTITKMPILVKGVITAEDTRLAI 242
Query: 241 QAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGA 300
QAGAAGIIVSNHGARQLDYVPATI ALEEVVKA QGR+PVFLDGGVRRGTDVFKALALGA
Sbjct: 243 QAGAAGIIVSNHGARQLDYVPATISALEEVVKAAQGRVPVFLDGGVRRGTDVFKALALGA 302
Query: 301 SGIFIGRPVVYSLAAEGEKGVRRVLEMLREEFELAMALSGCRSLKEITRDHIVTEWDASL 360
+GIFIGRPVV SLAAEGE GVR+VL+MLR+EFEL MALSGC SLKEITRDHIVTEWDA
Sbjct: 303 AGIFIGRPVVLSLAAEGEAGVRKVLQMLRDEFELTMALSGCTSLKEITRDHIVTEWDAPK 362
Query: 361 PRPVPRL 367
RP PRL
Sbjct: 363 ARPAPRL 369
|
Source: Mikania micrantha Species: Mikania micrantha Genus: Mikania Family: Asteraceae Order: Asterales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|323650489|gb|ADX97325.1| glycolate oxidase [Mangifera indica] | Back alignment and taxonomy information |
|---|
Score = 676 bits (1745), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 338/370 (91%), Positives = 356/370 (96%), Gaps = 3/370 (0%)
Query: 1 MGEITNVMEYEAIAKEKLPKMVFDYYASGAEDQWTLQENRNAFSRILFRPRILIDVSKID 60
M EITNVMEYEAIAK+KLPKMVFDYYASGAEDQWTL+ENR AFSRILFRPRILIDVSKID
Sbjct: 1 MEEITNVMEYEAIAKQKLPKMVFDYYASGAEDQWTLRENRFAFSRILFRPRILIDVSKID 60
Query: 61 MNTTVLGFKISMPIMIAPTAMQKMAHPEGEYATARAASAAGTIMTLSSWSTSSVEEVAST 120
M TTVLGFKISMPIMIAPTAMQKMAHPEGEYATARAASAAGTIMTLSSW+TSSVEEVAST
Sbjct: 61 MTTTVLGFKISMPIMIAPTAMQKMAHPEGEYATARAASAAGTIMTLSSWATSSVEEVAST 120
Query: 121 GPGIRFFQLYVYKDRNVVAQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLT 180
GPGIRFFQLYVYKDRNVVAQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLT
Sbjct: 121 GPGIRFFQLYVYKDRNVVAQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLT 180
Query: 181 LKNFQGLDLGKMDEANDSGLAAYVAGQIDRSLSW---KWLQTITKLPILVKGVLTAEDAR 237
L+NF+GLDLGKMD+ANDSGLA+YVAGQIDRSLSW KWLQTITKLPILVKGVLTAEDAR
Sbjct: 181 LRNFEGLDLGKMDQANDSGLASYVAGQIDRSLSWKDVKWLQTITKLPILVKGVLTAEDAR 240
Query: 238 IAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALA 297
+A+QAGAAGIIVSNHGARQLDYVPATIMALEEVVKA+QGR+PVFLDGGVRRGTDVFKALA
Sbjct: 241 LAIQAGAAGIIVSNHGARQLDYVPATIMALEEVVKASQGRVPVFLDGGVRRGTDVFKALA 300
Query: 298 LGASGIFIGRPVVYSLAAEGEKGVRRVLEMLREEFELAMALSGCRSLKEITRDHIVTEWD 357
LGASGIFIGRPVV+SLAA+GE G+R+ L+MLR+EFEL MALSGCRSLKEITRDHIVT+WD
Sbjct: 301 LGASGIFIGRPVVFSLAADGEAGIRKALQMLRDEFELTMALSGCRSLKEITRDHIVTDWD 360
Query: 358 ASLPRPVPRL 367
PR PRL
Sbjct: 361 LPQPRIAPRL 370
|
Source: Mangifera indica Species: Mangifera indica Genus: Mangifera Family: Anacardiaceae Order: Sapindales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|297790174|ref|XP_002862992.1| hypothetical protein ARALYDRAFT_333142 [Arabidopsis lyrata subsp. lyrata] gi|297839705|ref|XP_002887734.1| hypothetical protein ARALYDRAFT_895734 [Arabidopsis lyrata subsp. lyrata] gi|297308786|gb|EFH39251.1| hypothetical protein ARALYDRAFT_333142 [Arabidopsis lyrata subsp. lyrata] gi|297333575|gb|EFH63993.1| hypothetical protein ARALYDRAFT_895734 [Arabidopsis lyrata subsp. lyrata] | Back alignment and taxonomy information |
|---|
Score = 674 bits (1740), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 337/368 (91%), Positives = 355/368 (96%), Gaps = 3/368 (0%)
Query: 3 EITNVMEYEAIAKEKLPKMVFDYYASGAEDQWTLQENRNAFSRILFRPRILIDVSKIDMN 62
EITNV EYEAIAKEKLPKMVFDYYASGAEDQWTLQENRNAFSRILFRPRILIDVSKIDM
Sbjct: 2 EITNVNEYEAIAKEKLPKMVFDYYASGAEDQWTLQENRNAFSRILFRPRILIDVSKIDMT 61
Query: 63 TTVLGFKISMPIMIAPTAMQKMAHPEGEYATARAASAAGTIMTLSSWSTSSVEEVASTGP 122
TTVLGFKISMPIM+APTAMQKMAHPEGEYATARAASAAGTIMTLSSW+TSSVEEVASTGP
Sbjct: 62 TTVLGFKISMPIMVAPTAMQKMAHPEGEYATARAASAAGTIMTLSSWATSSVEEVASTGP 121
Query: 123 GIRFFQLYVYKDRNVVAQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLTLK 182
GIRFFQLYVYKDRNVVAQLVRRAERAGFKAIALTVDTPRLGRRE+DIKNRFTLPP+LTLK
Sbjct: 122 GIRFFQLYVYKDRNVVAQLVRRAERAGFKAIALTVDTPRLGRRESDIKNRFTLPPYLTLK 181
Query: 183 NFQGLDLGKMDEANDSGLAAYVAGQIDRSLSWK---WLQTITKLPILVKGVLTAEDARIA 239
NF+GLDLGKMDEANDSGLA+YVAGQIDR+LSWK WLQTITKLPILVKGVLTAEDAR+A
Sbjct: 182 NFEGLDLGKMDEANDSGLASYVAGQIDRTLSWKDVQWLQTITKLPILVKGVLTAEDARMA 241
Query: 240 VQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALG 299
VQAGAAGIIVSNHGARQLDYVPATI+ALEEVVKA QG+IPVFLDGGVRRGTDVFKALALG
Sbjct: 242 VQAGAAGIIVSNHGARQLDYVPATIIALEEVVKAAQGKIPVFLDGGVRRGTDVFKALALG 301
Query: 300 ASGIFIGRPVVYSLAAEGEKGVRRVLEMLREEFELAMALSGCRSLKEITRDHIVTEWDAS 359
ASGIFIGRPVV+SLAAEGE GVR+VL+M+REEFEL MALSGC SLKEITR+HI+T+WDA
Sbjct: 302 ASGIFIGRPVVFSLAAEGEAGVRKVLQMMREEFELTMALSGCTSLKEITRNHIITDWDAP 361
Query: 360 LPRPVPRL 367
R VP+L
Sbjct: 362 QARLVPKL 369
|
Source: Arabidopsis lyrata subsp. lyrata Species: Arabidopsis lyrata Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|304368145|gb|ADM26718.1| glycolate oxidase [Nicotiana benthamiana] | Back alignment and taxonomy information |
|---|
Score = 671 bits (1731), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 338/373 (90%), Positives = 356/373 (95%), Gaps = 8/373 (2%)
Query: 1 MGEITNVMEYEAIAKEKLPKMVFDYYASGAEDQWTLQENRNAFSRILFRPRILIDVSKID 60
M E+TNVMEYEAIAK+KLPKMVFDYYASGAEDQWTL ENRNAFSRILFRPRILIDVSKID
Sbjct: 1 MEEVTNVMEYEAIAKKKLPKMVFDYYASGAEDQWTLAENRNAFSRILFRPRILIDVSKID 60
Query: 61 MNTTVLGFKISMPIMIAPTAMQKMAHPEGEYATARAASAAGTIMTLSSWSTSSVEEVAST 120
M+TTVLGFKISMPIMIAPTAMQKMAHPEGEYATARAASAAGTIMTLSSW+TSSVEEVAST
Sbjct: 61 MSTTVLGFKISMPIMIAPTAMQKMAHPEGEYATARAASAAGTIMTLSSWATSSVEEVAST 120
Query: 121 GPGIRFFQLYVYKDRNVVAQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLT 180
GPGIRFFQLYVYKDRNVVAQLVRRAERAGFKAIALTVDTPRLGRREADIKNRF LPPFLT
Sbjct: 121 GPGIRFFQLYVYKDRNVVAQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFVLPPFLT 180
Query: 181 LKNFQGLDLGKMDEANDSGLAAYVAGQIDRSLSWK---WLQTITKLPILVKGVLTAEDAR 237
LKNF+GLDLGKMD+A+DSGLA+YVAGQIDR+LSWK WLQTIT LPILVKGVLTAEDAR
Sbjct: 181 LKNFEGLDLGKMDQASDSGLASYVAGQIDRTLSWKDVQWLQTITSLPILVKGVLTAEDAR 240
Query: 238 IAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALA 297
+AVQAGAAGIIVSNHGARQLDYVP+TIMALEEVVKA QGRIPVFLDGGVRRGTDVFKALA
Sbjct: 241 LAVQAGAAGIIVSNHGARQLDYVPSTIMALEEVVKAAQGRIPVFLDGGVRRGTDVFKALA 300
Query: 298 LGASGIFIGRPVVYSLAAEGEKGVRRVLEMLREEFELAMALSGCRSLKEITRDHIVTEWD 357
LGASGIFIGRPVV+SLAAEGE G+++VL+MLR+EFEL MALSGCRSL EITR+HIVTEWD
Sbjct: 301 LGASGIFIGRPVVFSLAAEGEAGIKKVLQMLRDEFELTMALSGCRSLNEITRNHIVTEWD 360
Query: 358 ASLPR---PVPRL 367
A PR P PRL
Sbjct: 361 A--PRAALPAPRL 371
|
Source: Nicotiana benthamiana Species: Nicotiana benthamiana Genus: Nicotiana Family: Solanaceae Order: Solanales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|224117076|ref|XP_002317470.1| predicted protein [Populus trichocarpa] gi|118489504|gb|ABK96554.1| unknown [Populus trichocarpa x Populus deltoides] gi|222860535|gb|EEE98082.1| predicted protein [Populus trichocarpa] | Back alignment and taxonomy information |
|---|
Score = 667 bits (1722), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 333/368 (90%), Positives = 353/368 (95%), Gaps = 3/368 (0%)
Query: 3 EITNVMEYEAIAKEKLPKMVFDYYASGAEDQWTLQENRNAFSRILFRPRILIDVSKIDMN 62
EITNVMEYEAIAK+KLPKMVFDYYASGAEDQWTL ENRNAFSRILFRPRILIDVSKIDM
Sbjct: 2 EITNVMEYEAIAKQKLPKMVFDYYASGAEDQWTLAENRNAFSRILFRPRILIDVSKIDMA 61
Query: 63 TTVLGFKISMPIMIAPTAMQKMAHPEGEYATARAASAAGTIMTLSSWSTSSVEEVASTGP 122
TTVLGFKISMPIMIAPTAMQKMAHPEGEYATARAASAAGTIMTLSSW+TSSVEEVASTGP
Sbjct: 62 TTVLGFKISMPIMIAPTAMQKMAHPEGEYATARAASAAGTIMTLSSWATSSVEEVASTGP 121
Query: 123 GIRFFQLYVYKDRNVVAQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLTLK 182
GIRFFQLYVYKDRNVVAQLVRRAERAGFKAIALTVDTPRLGRRE+DIKNRF+LPPFLTLK
Sbjct: 122 GIRFFQLYVYKDRNVVAQLVRRAERAGFKAIALTVDTPRLGRRESDIKNRFSLPPFLTLK 181
Query: 183 NFQGLDLGKMDEANDSGLAAYVAGQIDRSLSWK---WLQTITKLPILVKGVLTAEDARIA 239
NF+GLDLGKMD+A+DSGLA+YVAGQIDR+LSWK WLQTIT+LPILVKGVLTAEDAR++
Sbjct: 182 NFEGLDLGKMDKADDSGLASYVAGQIDRTLSWKDVEWLQTITRLPILVKGVLTAEDARLS 241
Query: 240 VQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALG 299
VQAGAAGIIVSNHGARQLDYVP+TIMALEEVVKA QGR+PVFLDGGVRRGTDVFKALALG
Sbjct: 242 VQAGAAGIIVSNHGARQLDYVPSTIMALEEVVKAAQGRVPVFLDGGVRRGTDVFKALALG 301
Query: 300 ASGIFIGRPVVYSLAAEGEKGVRRVLEMLREEFELAMALSGCRSLKEITRDHIVTEWDAS 359
ASGIFIGRPVV+SLA+EGE GVR+VL+MLREEFEL MALSGCRSLKEITRDHIV +WD
Sbjct: 302 ASGIFIGRPVVFSLASEGEAGVRKVLQMLREEFELTMALSGCRSLKEITRDHIVADWDHP 361
Query: 360 LPRPVPRL 367
R P+L
Sbjct: 362 RARLAPKL 369
|
Source: Populus trichocarpa Species: Populus trichocarpa Genus: Populus Family: Salicaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|224121620|ref|XP_002330746.1| predicted protein [Populus trichocarpa] gi|118486606|gb|ABK95141.1| unknown [Populus trichocarpa] gi|222872522|gb|EEF09653.1| predicted protein [Populus trichocarpa] | Back alignment and taxonomy information |
|---|
Score = 667 bits (1720), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 335/368 (91%), Positives = 351/368 (95%), Gaps = 3/368 (0%)
Query: 3 EITNVMEYEAIAKEKLPKMVFDYYASGAEDQWTLQENRNAFSRILFRPRILIDVSKIDMN 62
EITNV EYEAIAK+KLPKMV+DYYASGAEDQWTL ENRNAFSRILFRPRILIDVSKIDM
Sbjct: 2 EITNVTEYEAIAKQKLPKMVYDYYASGAEDQWTLAENRNAFSRILFRPRILIDVSKIDMA 61
Query: 63 TTVLGFKISMPIMIAPTAMQKMAHPEGEYATARAASAAGTIMTLSSWSTSSVEEVASTGP 122
TTVLGFKISMPIMIAPTAMQKMAHPEGEYATARAASAAGTIMTLSSW+TSSVEEVASTGP
Sbjct: 62 TTVLGFKISMPIMIAPTAMQKMAHPEGEYATARAASAAGTIMTLSSWATSSVEEVASTGP 121
Query: 123 GIRFFQLYVYKDRNVVAQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLTLK 182
GIRFFQLYVYKDRNVVAQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLTLK
Sbjct: 122 GIRFFQLYVYKDRNVVAQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLTLK 181
Query: 183 NFQGLDLGKMDEANDSGLAAYVAGQIDRSLSWK---WLQTITKLPILVKGVLTAEDARIA 239
NF+GLDLGKMD+A DSGLA+YVAGQIDR+LSWK WLQTITKLPILVKGVLTAEDAR++
Sbjct: 182 NFEGLDLGKMDKAADSGLASYVAGQIDRTLSWKDVEWLQTITKLPILVKGVLTAEDARLS 241
Query: 240 VQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALG 299
VQAGAAGIIVSNHGARQLDYVP+TIMALEEVVKA QGR+PVFLDGGVRRGTDVFKALALG
Sbjct: 242 VQAGAAGIIVSNHGARQLDYVPSTIMALEEVVKAAQGRVPVFLDGGVRRGTDVFKALALG 301
Query: 300 ASGIFIGRPVVYSLAAEGEKGVRRVLEMLREEFELAMALSGCRSLKEITRDHIVTEWDAS 359
ASGIFIGRPVV+SLA+EGE GVR+VL+MLREEFEL MALSGCRSLKEITR HIV +WD
Sbjct: 302 ASGIFIGRPVVFSLASEGETGVRKVLQMLREEFELTMALSGCRSLKEITRAHIVADWDHP 361
Query: 360 LPRPVPRL 367
L R PRL
Sbjct: 362 LNRLAPRL 369
|
Source: Populus trichocarpa Species: Populus trichocarpa Genus: Populus Family: Salicaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|225462096|ref|XP_002277249.1| PREDICTED: peroxisomal (S)-2-hydroxy-acid oxidase GLO1 [Vitis vinifera] gi|296086772|emb|CBI32921.3| unnamed protein product [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 667 bits (1720), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 335/370 (90%), Positives = 354/370 (95%), Gaps = 5/370 (1%)
Query: 3 EITNVMEYEAIAKEKLPKMVFDYYASGAEDQWTLQENRNAFSRILFRPRILIDVSKIDMN 62
EITNV EYEAIAK+KLPKMVFDYYASGAEDQWTL +NR+AFS+ILFRPRILIDVSKIDM
Sbjct: 2 EITNVTEYEAIAKQKLPKMVFDYYASGAEDQWTLYQNRHAFSQILFRPRILIDVSKIDMT 61
Query: 63 TTVLGFKISMPIMIAPTAMQKMAHPEGEYATARAASAAGTIMTLSSWSTSSVEEVASTGP 122
TTVLGFKISMPIMIAPTAMQKMAHPEGEYATARAASAAGTIMTLSSW+TSSVEEVASTGP
Sbjct: 62 TTVLGFKISMPIMIAPTAMQKMAHPEGEYATARAASAAGTIMTLSSWATSSVEEVASTGP 121
Query: 123 GIRFFQLYVYKDRNVVAQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLTLK 182
GIRFFQLYVYKDR+VVAQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLTLK
Sbjct: 122 GIRFFQLYVYKDRHVVAQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLTLK 181
Query: 183 NFQGLDLGKMDEANDSGLAAYVAGQIDRSLSW---KWLQTITKLPILVKGVLTAEDARIA 239
NF+GLDLGKMD+A+DSGLA+YVAGQIDR+LSW KWLQTIT LPILVKGVLTAED R+A
Sbjct: 182 NFEGLDLGKMDKADDSGLASYVAGQIDRTLSWKDVKWLQTITNLPILVKGVLTAEDTRLA 241
Query: 240 VQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALG 299
+QAGAAGIIVSNHGARQLDYVPATIMALEEVVKA QGR+PVFLDGGVRRGTDVFKALALG
Sbjct: 242 IQAGAAGIIVSNHGARQLDYVPATIMALEEVVKAAQGRVPVFLDGGVRRGTDVFKALALG 301
Query: 300 ASGIFIGRPVVYSLAAEGEKGVRRVLEMLREEFELAMALSGCRSLKEITRDHIVTEWDAS 359
ASGIFIGRPVV+SLAAEGE GVR+VL+MLREEFEL MALSGCRSLKEITRDHIVTEW+
Sbjct: 302 ASGIFIGRPVVFSLAAEGEAGVRKVLQMLREEFELTMALSGCRSLKEITRDHIVTEWEVP 361
Query: 360 LP--RPVPRL 367
P RP+PRL
Sbjct: 362 PPGSRPLPRL 371
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|359806771|ref|NP_001241302.1| peroxisomal (S)-2-hydroxy-acid oxidase GLO1-like [Glycine max] gi|167961875|dbj|BAG09382.1| peroxisomal glycolate oxidase [Glycine max] | Back alignment and taxonomy information |
|---|
Score = 665 bits (1716), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 335/370 (90%), Positives = 353/370 (95%), Gaps = 5/370 (1%)
Query: 3 EITNVMEYEAIAKEKLPKMVFDYYASGAEDQWTLQENRNAFSRILFRPRILIDVSKIDMN 62
EITNV EYEAIAK+KLPKMVFDYYASGAEDQWTLQENRNAFSRILFRPRILIDVSKID+
Sbjct: 2 EITNVSEYEAIAKQKLPKMVFDYYASGAEDQWTLQENRNAFSRILFRPRILIDVSKIDIT 61
Query: 63 TTVLGFKISMPIMIAPTAMQKMAHPEGEYATARAASAAGTIMTLSSWSTSSVEEVASTGP 122
TTVLGFKISMPIM+APTAMQKMAHPEGEYATARAASAAGTIMTLSSW+TSSVEEVASTGP
Sbjct: 62 TTVLGFKISMPIMLAPTAMQKMAHPEGEYATARAASAAGTIMTLSSWATSSVEEVASTGP 121
Query: 123 GIRFFQLYVYKDRNVVAQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLTLK 182
GIRFFQLYVYKDRNVVAQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLTLK
Sbjct: 122 GIRFFQLYVYKDRNVVAQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLTLK 181
Query: 183 NFQGLDLGKMDEANDSGLAAYVAGQIDRSLSW---KWLQTITKLPILVKGVLTAEDARIA 239
NF+GLDLGKMD+A+DSGLA+YVAGQIDR+LSW KWLQTITKLPILVKGVLTAED RIA
Sbjct: 182 NFEGLDLGKMDKADDSGLASYVAGQIDRTLSWKDVKWLQTITKLPILVKGVLTAEDTRIA 241
Query: 240 VQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALG 299
VQ+GAAGIIVSNHGARQLDYVPATI ALEEVVKA +GR+PVFLDGGVRRGTDVFKALALG
Sbjct: 242 VQSGAAGIIVSNHGARQLDYVPATISALEEVVKAAEGRVPVFLDGGVRRGTDVFKALALG 301
Query: 300 ASGIFIGRPVVYSLAAEGEKGVRRVLEMLREEFELAMALSGCRSLKEITRDHIVTEWDA- 358
ASGIFIGRPVV+SLAAEGE GVR VL MLREEFEL MALSGC SLK+ITRDHIVT+WD
Sbjct: 302 ASGIFIGRPVVFSLAAEGEAGVRNVLRMLREEFELTMALSGCTSLKDITRDHIVTDWDQP 361
Query: 359 -SLPRPVPRL 367
++PR +PRL
Sbjct: 362 RTIPRALPRL 371
|
Source: Glycine max Species: Glycine max Genus: Glycine Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|366984550|gb|AEX09184.1| glycolate oxidase [Gossypium hirsutum] | Back alignment and taxonomy information |
|---|
Score = 665 bits (1715), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 333/368 (90%), Positives = 352/368 (95%), Gaps = 5/368 (1%)
Query: 3 EITNVMEYEAIAKEKLPKMVFDYYASGAEDQWTLQENRNAFSRILFRPRILIDVSKIDMN 62
EITN+ EYEAIAKEKLPKMV+DYYASGAEDQWTL+ENRNAFSRILFRPRILIDVSKIDM
Sbjct: 2 EITNITEYEAIAKEKLPKMVYDYYASGAEDQWTLKENRNAFSRILFRPRILIDVSKIDMT 61
Query: 63 TTVLGFKISMPIMIAPTAMQKMAHPEGEYATARAASAAGTIMTLSSWSTSSVEEVASTGP 122
TTVLGFKISMPIMIAPTAMQKMAHPEGEYATARAASAAGTIMTLSSW+TSSVE+VASTGP
Sbjct: 62 TTVLGFKISMPIMIAPTAMQKMAHPEGEYATARAASAAGTIMTLSSWATSSVEDVASTGP 121
Query: 123 GIRFFQLYVYKDRNVVAQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLTLK 182
GIRFFQLYVYKDRNVVAQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLTLK
Sbjct: 122 GIRFFQLYVYKDRNVVAQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLTLK 181
Query: 183 NFQGLDLGKMDEANDSGLAAYVAGQIDRSLSW---KWLQTITKLPILVKGVLTAEDARIA 239
NF+GL+LGKMD+ +DSGLA+YVAGQIDRSLSW KWLQTIT LPILVKGVL AEDAR+A
Sbjct: 182 NFEGLNLGKMDKTDDSGLASYVAGQIDRSLSWKDVKWLQTITSLPILVKGVLNAEDARLA 241
Query: 240 VQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALG 299
+QAGAAGIIVSNHGARQLDYVPATIMALEEVVKA QGR+PVFLDGGVRRGTDVFKALALG
Sbjct: 242 IQAGAAGIIVSNHGARQLDYVPATIMALEEVVKAAQGRVPVFLDGGVRRGTDVFKALALG 301
Query: 300 ASGIFIGRPVVYSLAAEGEKGVRRVLEMLREEFELAMALSGCRSLKEITRDHIVTEWDAS 359
ASGIFIGRPVV+SLAAEGE GVR+VL+MLR+EFEL MALSGCRSLKEITR+HIV +WD
Sbjct: 302 ASGIFIGRPVVFSLAAEGEAGVRKVLQMLRDEFELTMALSGCRSLKEITRNHIVADWDQ- 360
Query: 360 LPRPVPRL 367
PR VPRL
Sbjct: 361 -PRVVPRL 367
|
Source: Gossypium hirsutum Species: Gossypium hirsutum Genus: Gossypium Family: Malvaceae Order: Malvales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST
Original result of BLAST against Gene Ontology (AMIGO)
| ID |
Alignment graph |
Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 367 | ||||||
| TAIR|locus:2091642 | 367 | GOX1 "glycolate oxidase 1" [Ar | 0.989 | 0.989 | 0.842 | 8.4e-161 | |
| UNIPROTKB|B8AKX6 | 369 | GLO1 "Peroxisomal (S)-2-hydrox | 0.997 | 0.991 | 0.794 | 3.6e-153 | |
| UNIPROTKB|Q10CE4 | 369 | GLO1 "Peroxisomal (S)-2-hydrox | 0.997 | 0.991 | 0.794 | 3.6e-153 | |
| UNIPROTKB|B8B7C5 | 369 | GLO5 "Peroxisomal (S)-2-hydrox | 0.972 | 0.967 | 0.805 | 2e-152 | |
| UNIPROTKB|Q6YT73 | 369 | GLO5 "Peroxisomal (S)-2-hydrox | 0.972 | 0.967 | 0.805 | 2e-152 | |
| TAIR|locus:2124499 | 368 | GOX3 "glycolate oxidase 3" [Ar | 0.967 | 0.964 | 0.798 | 1.2e-150 | |
| UNIPROTKB|B8AUI3 | 367 | GLO3 "Peroxisomal (S)-2-hydrox | 0.964 | 0.964 | 0.764 | 2.6e-143 | |
| UNIPROTKB|Q7FAS1 | 367 | GLO3 "Peroxisomal (S)-2-hydrox | 0.964 | 0.964 | 0.764 | 2.6e-143 | |
| UNIPROTKB|Q01KC2 | 368 | GLO2 "Peroxisomal (S)-2-hydrox | 0.972 | 0.970 | 0.661 | 2.3e-126 | |
| UNIPROTKB|Q7XPR4 | 368 | GLO2 "Peroxisomal (S)-2-hydrox | 0.972 | 0.970 | 0.661 | 2.3e-126 |
| TAIR|locus:2091642 GOX1 "glycolate oxidase 1" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1566 (556.3 bits), Expect = 8.4e-161, P = 8.4e-161
Identities = 310/368 (84%), Positives = 328/368 (89%)
Query: 3 EITNVMEYEAIAKEKLPKMVFDYYASGAEDQWTLQENRNAFSRILFRPRILIDVSKIDMN 62
EITNV EY+AIAK+KLPKMV+DYYASGAEDQWTLQENRNAF+RILFRPRILIDVSKIDM
Sbjct: 2 EITNVTEYDAIAKQKLPKMVYDYYASGAEDQWTLQENRNAFARILFRPRILIDVSKIDMT 61
Query: 63 TTVLGFKISMPIMIAPTAMQKMAHPEGEYXXXXXXXXXGTIMTLSSWSTSSVEEVASTGP 122
TTVLGFKISMPIM+APTAMQKMAHP+GEY GTIMTLSSW+TSSVEEVASTGP
Sbjct: 62 TTVLGFKISMPIMVAPTAMQKMAHPDGEYATARAASAAGTIMTLSSWATSSVEEVASTGP 121
Query: 123 GIRFFQLYVYKDRNVVAQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLTLK 182
GIRFFQLYVYK+RNVV QLVRRAERAGFKAIALTVDTPRLGRRE+DIKNRFTLPP LTLK
Sbjct: 122 GIRFFQLYVYKNRNVVEQLVRRAERAGFKAIALTVDTPRLGRRESDIKNRFTLPPNLTLK 181
Query: 183 NFQGLDLGKMDEANDSGLAAYVAGQIDRSLSWK---WLQTITKLPILVKGVLTAEDXXXX 239
NF+GLDLGKMDEANDSGLA+YVAGQIDR+LSWK WLQTITKLPILVKGVLT ED
Sbjct: 182 NFEGLDLGKMDEANDSGLASYVAGQIDRTLSWKDVQWLQTITKLPILVKGVLTGEDARIA 241
Query: 240 XXXXXXXXXXSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALG 299
SNHGARQLDYVPATI ALEEVVKATQGRIPVFLDGGVRRGTDVFKALALG
Sbjct: 242 IQAGAAGIIVSNHGARQLDYVPATISALEEVVKATQGRIPVFLDGGVRRGTDVFKALALG 301
Query: 300 ASGIFIGRPVVYSLAAEGEKGVRRVLEMLREEFELAMALSGCRSLKEITRDHIVTEWDAS 359
ASGIFIGRPVV+SLAAEGE GVR+VL+MLR+EFEL MALSGCRSLKEI+R+HI TEWD
Sbjct: 302 ASGIFIGRPVVFSLAAEGEAGVRKVLQMLRDEFELTMALSGCRSLKEISRNHITTEWDT- 360
Query: 360 LPRPVPRL 367
PRP RL
Sbjct: 361 -PRPSARL 367
|
|
| UNIPROTKB|B8AKX6 GLO1 "Peroxisomal (S)-2-hydroxy-acid oxidase GLO1" [Oryza sativa Indica Group (taxid:39946)] | Back alignment and assigned GO terms |
|---|
Score = 1494 (531.0 bits), Expect = 3.6e-153, P = 3.6e-153
Identities = 294/370 (79%), Positives = 321/370 (86%)
Query: 1 MGEITNVMEYEAIAKEKLPKMVFDYYASGAEDQWTLQENRNAFSRILFRPRILIDVSKID 60
MGEITNVMEY+AIAK+KLPKM++DYYASGAED+WTL+ENR AFSRILFRPRILIDVSKID
Sbjct: 1 MGEITNVMEYQAIAKQKLPKMIYDYYASGAEDEWTLKENREAFSRILFRPRILIDVSKID 60
Query: 61 MNTTVLGFKISMPIMIAPTAMQKMAHPEGEYXXXXXXXXXGTIMTLSSWSTSSVEEVAST 120
M+ TVLGFKISMPIMIAP+AMQKMAHP+GEY GTIMTLSSW+TSSVEEVAST
Sbjct: 61 MSATVLGFKISMPIMIAPSAMQKMAHPDGEYATARAASAAGTIMTLSSWATSSVEEVAST 120
Query: 121 GPGIRFFQLYVYKDRNVVAQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLT 180
GPGIRFFQLYVYKDRNVV QLVRRAERAGFKAIALTVDTPRLGRREADIKNRF LPP+LT
Sbjct: 121 GPGIRFFQLYVYKDRNVVEQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFVLPPYLT 180
Query: 181 LKNFQGLDLGKMDEANDSGLAAYVAGQIDRSLSWK---WLQTITKLPILVKGVLTAEDXX 237
LKNF+GLDL +MD++NDSGLA+YVAGQIDR+LSWK WLQ+IT LPILVKGV+TAED
Sbjct: 181 LKNFEGLDLAEMDKSNDSGLASYVAGQIDRTLSWKDVKWLQSITSLPILVKGVITAEDAR 240
Query: 238 XXXXXXXXXXXXSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALA 297
SNHGARQLDYVPATI ALEEVV A GRIPV+LDGGVRRGTDVFKALA
Sbjct: 241 LAVHSGAAGIIVSNHGARQLDYVPATISALEEVVTAAAGRIPVYLDGGVRRGTDVFKALA 300
Query: 298 LGASGIFIGRPVVYSLAAEGEKGVRRVLEMLREEFELAMALSGCRSLKEITRDHIVTEWD 357
LGA+G+FIGRPVV++LAAEGE GVR VL M+REEFEL MALSGC SL +ITR HI T+ D
Sbjct: 301 LGAAGVFIGRPVVFALAAEGEAGVRNVLRMMREEFELTMALSGCTSLADITRAHIYTDAD 360
Query: 358 ASLPRPVPRL 367
L RP PRL
Sbjct: 361 R-LARPFPRL 369
|
|
| UNIPROTKB|Q10CE4 GLO1 "Peroxisomal (S)-2-hydroxy-acid oxidase GLO1" [Oryza sativa Japonica Group (taxid:39947)] | Back alignment and assigned GO terms |
|---|
Score = 1494 (531.0 bits), Expect = 3.6e-153, P = 3.6e-153
Identities = 294/370 (79%), Positives = 321/370 (86%)
Query: 1 MGEITNVMEYEAIAKEKLPKMVFDYYASGAEDQWTLQENRNAFSRILFRPRILIDVSKID 60
MGEITNVMEY+AIAK+KLPKM++DYYASGAED+WTL+ENR AFSRILFRPRILIDVSKID
Sbjct: 1 MGEITNVMEYQAIAKQKLPKMIYDYYASGAEDEWTLKENREAFSRILFRPRILIDVSKID 60
Query: 61 MNTTVLGFKISMPIMIAPTAMQKMAHPEGEYXXXXXXXXXGTIMTLSSWSTSSVEEVAST 120
M+ TVLGFKISMPIMIAP+AMQKMAHP+GEY GTIMTLSSW+TSSVEEVAST
Sbjct: 61 MSATVLGFKISMPIMIAPSAMQKMAHPDGEYATARAASAAGTIMTLSSWATSSVEEVAST 120
Query: 121 GPGIRFFQLYVYKDRNVVAQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLT 180
GPGIRFFQLYVYKDRNVV QLVRRAERAGFKAIALTVDTPRLGRREADIKNRF LPP+LT
Sbjct: 121 GPGIRFFQLYVYKDRNVVEQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFVLPPYLT 180
Query: 181 LKNFQGLDLGKMDEANDSGLAAYVAGQIDRSLSWK---WLQTITKLPILVKGVLTAEDXX 237
LKNF+GLDL +MD++NDSGLA+YVAGQIDR+LSWK WLQ+IT LPILVKGV+TAED
Sbjct: 181 LKNFEGLDLAEMDKSNDSGLASYVAGQIDRTLSWKDVKWLQSITSLPILVKGVITAEDAR 240
Query: 238 XXXXXXXXXXXXSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALA 297
SNHGARQLDYVPATI ALEEVV A GRIPV+LDGGVRRGTDVFKALA
Sbjct: 241 LAVHSGAAGIIVSNHGARQLDYVPATISALEEVVTAAAGRIPVYLDGGVRRGTDVFKALA 300
Query: 298 LGASGIFIGRPVVYSLAAEGEKGVRRVLEMLREEFELAMALSGCRSLKEITRDHIVTEWD 357
LGA+G+FIGRPVV++LAAEGE GVR VL M+REEFEL MALSGC SL +ITR HI T+ D
Sbjct: 301 LGAAGVFIGRPVVFALAAEGEAGVRNVLRMMREEFELTMALSGCTSLADITRAHIYTDAD 360
Query: 358 ASLPRPVPRL 367
L RP PRL
Sbjct: 361 R-LARPFPRL 369
|
|
| UNIPROTKB|B8B7C5 GLO5 "Peroxisomal (S)-2-hydroxy-acid oxidase GLO5" [Oryza sativa Indica Group (taxid:39946)] | Back alignment and assigned GO terms |
|---|
Score = 1487 (528.5 bits), Expect = 2.0e-152, P = 2.0e-152
Identities = 290/360 (80%), Positives = 318/360 (88%)
Query: 1 MGEITNVMEYEAIAKEKLPKMVFDYYASGAEDQWTLQENRNAFSRILFRPRILIDVSKID 60
MGEITNV EY+AIAK+KLPKM++DYYASGAED+WTLQENR AF+RILFRPRILIDVSKID
Sbjct: 1 MGEITNVTEYQAIAKQKLPKMIYDYYASGAEDEWTLQENREAFARILFRPRILIDVSKID 60
Query: 61 MNTTVLGFKISMPIMIAPTAMQKMAHPEGEYXXXXXXXXXGTIMTLSSWSTSSVEEVAST 120
M TTVLGFKISMPIMIAP+AMQKMAHP+GEY GTIMTLSSW+TSSVEEVAST
Sbjct: 61 MATTVLGFKISMPIMIAPSAMQKMAHPDGEYATARAASAAGTIMTLSSWATSSVEEVAST 120
Query: 121 GPGIRFFQLYVYKDRNVVAQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLT 180
GPGIRFFQLYVYKDR VV QLVRRAERAGFKAIALTVDTPRLGRREADIKNRF LPPFLT
Sbjct: 121 GPGIRFFQLYVYKDRRVVEQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFVLPPFLT 180
Query: 181 LKNFQGLDLGKMDEANDSGLAAYVAGQIDRSLSWK---WLQTITKLPILVKGVLTAEDXX 237
LKNF+GL+LGKMD+A+DSGLA+YVAGQIDR+LSWK WLQTIT LPILVKGV+TAED
Sbjct: 181 LKNFEGLELGKMDQASDSGLASYVAGQIDRTLSWKDVKWLQTITTLPILVKGVITAEDTR 240
Query: 238 XXXXXXXXXXXXSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALA 297
SNHGARQLDYVPATI ALEEVVKA +G++PVFLDGGVRRGTDVFKALA
Sbjct: 241 LAVENGAAGIIVSNHGARQLDYVPATISALEEVVKAARGQLPVFLDGGVRRGTDVFKALA 300
Query: 298 LGASGIFIGRPVVYSLAAEGEKGVRRVLEMLREEFELAMALSGCRSLKEITRDHIVTEWD 357
LGA+G+FIGRPVV+SLAA GE GVR VL+MLR+EFEL MALSGC SL +ITR+H++TE D
Sbjct: 301 LGAAGVFIGRPVVFSLAAAGEAGVRNVLQMLRDEFELTMALSGCTSLADITRNHVITEAD 360
|
|
| UNIPROTKB|Q6YT73 GLO5 "Peroxisomal (S)-2-hydroxy-acid oxidase GLO5" [Oryza sativa Japonica Group (taxid:39947)] | Back alignment and assigned GO terms |
|---|
Score = 1487 (528.5 bits), Expect = 2.0e-152, P = 2.0e-152
Identities = 290/360 (80%), Positives = 318/360 (88%)
Query: 1 MGEITNVMEYEAIAKEKLPKMVFDYYASGAEDQWTLQENRNAFSRILFRPRILIDVSKID 60
MGEITNV EY+AIAK+KLPKM++DYYASGAED+WTLQENR AF+RILFRPRILIDVSKID
Sbjct: 1 MGEITNVTEYQAIAKQKLPKMIYDYYASGAEDEWTLQENREAFARILFRPRILIDVSKID 60
Query: 61 MNTTVLGFKISMPIMIAPTAMQKMAHPEGEYXXXXXXXXXGTIMTLSSWSTSSVEEVAST 120
M TTVLGFKISMPIMIAP+AMQKMAHP+GEY GTIMTLSSW+TSSVEEVAST
Sbjct: 61 MATTVLGFKISMPIMIAPSAMQKMAHPDGEYATARAASAAGTIMTLSSWATSSVEEVAST 120
Query: 121 GPGIRFFQLYVYKDRNVVAQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLT 180
GPGIRFFQLYVYKDR VV QLVRRAERAGFKAIALTVDTPRLGRREADIKNRF LPPFLT
Sbjct: 121 GPGIRFFQLYVYKDRRVVEQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFVLPPFLT 180
Query: 181 LKNFQGLDLGKMDEANDSGLAAYVAGQIDRSLSWK---WLQTITKLPILVKGVLTAEDXX 237
LKNF+GL+LGKMD+A+DSGLA+YVAGQIDR+LSWK WLQTIT LPILVKGV+TAED
Sbjct: 181 LKNFEGLELGKMDQASDSGLASYVAGQIDRTLSWKDVKWLQTITTLPILVKGVITAEDTR 240
Query: 238 XXXXXXXXXXXXSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALA 297
SNHGARQLDYVPATI ALEEVVKA +G++PVFLDGGVRRGTDVFKALA
Sbjct: 241 LAVENGAAGIIVSNHGARQLDYVPATISALEEVVKAARGQLPVFLDGGVRRGTDVFKALA 300
Query: 298 LGASGIFIGRPVVYSLAAEGEKGVRRVLEMLREEFELAMALSGCRSLKEITRDHIVTEWD 357
LGA+G+FIGRPVV+SLAA GE GVR VL+MLR+EFEL MALSGC SL +ITR+H++TE D
Sbjct: 301 LGAAGVFIGRPVVFSLAAAGEAGVRNVLQMLRDEFELTMALSGCTSLADITRNHVITEAD 360
|
|
| TAIR|locus:2124499 GOX3 "glycolate oxidase 3" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1470 (522.5 bits), Expect = 1.2e-150, P = 1.2e-150
Identities = 286/358 (79%), Positives = 315/358 (87%)
Query: 3 EITNVMEYEAIAKEKLPKMVFDYYASGAEDQWTLQENRNAFSRILFRPRILIDVSKIDMN 62
EITNVMEYE IAKEKLPKMV+DYYASGAEDQWTLQENRNAFSRILFRPRILIDVSKID++
Sbjct: 2 EITNVMEYEKIAKEKLPKMVYDYYASGAEDQWTLQENRNAFSRILFRPRILIDVSKIDVS 61
Query: 63 TTVLGFKISMPIMIAPTAMQKMAHPEGEYXXXXXXXXXGTIMTLSSWSTSSVEEVASTGP 122
TTVLGF ISMPIMIAPTAMQKMAHP+GE GTIMTLSSW+T SVEEVASTGP
Sbjct: 62 TTVLGFNISMPIMIAPTAMQKMAHPDGELATARATSAAGTIMTLSSWATCSVEEVASTGP 121
Query: 123 GIRFFQLYVYKDRNVVAQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLTLK 182
GIRFFQLYVYKDRNVV QLV+RAE AGFKAIALTVDTPRLGRRE+DIKNRF LP LTLK
Sbjct: 122 GIRFFQLYVYKDRNVVIQLVKRAEEAGFKAIALTVDTPRLGRRESDIKNRFALPRGLTLK 181
Query: 183 NFQGLDLGKMDEANDSGLAAYVAGQIDRSLSWK---WLQTITKLPILVKGVLTAEDXXXX 239
NF+GLDLGK+D+ NDSGLA+YVAGQ+D+SLSWK WLQ+IT LPILVKGV+TAED
Sbjct: 182 NFEGLDLGKIDKTNDSGLASYVAGQVDQSLSWKDIKWLQSITSLPILVKGVITAEDARIA 241
Query: 240 XXXXXXXXXXSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALG 299
SNHGARQLDYVPATI+ALEEVVKA +GRIPVFLDGGVRRGTDVFKALALG
Sbjct: 242 VEYGAAGIIVSNHGARQLDYVPATIVALEEVVKAVEGRIPVFLDGGVRRGTDVFKALALG 301
Query: 300 ASGIFIGRPVVYSLAAEGEKGVRRVLEMLREEFELAMALSGCRSLKEITRDHIVTEWD 357
ASG+F+GRP ++SLAA+GE GVR++L+MLR+EFEL MALSGCRSL+EI+R HI T+WD
Sbjct: 302 ASGVFVGRPSLFSLAADGEAGVRKMLQMLRDEFELTMALSGCRSLREISRTHIKTDWD 359
|
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| UNIPROTKB|B8AUI3 GLO3 "Peroxisomal (S)-2-hydroxy-acid oxidase GLO3" [Oryza sativa Indica Group (taxid:39946)] | Back alignment and assigned GO terms |
|---|
Score = 1401 (498.2 bits), Expect = 2.6e-143, P = 2.6e-143
Identities = 273/357 (76%), Positives = 301/357 (84%)
Query: 4 ITNVMEYEAIAKEKLPKMVFDYYASGAEDQWTLQENRNAFSRILFRPRILIDVSKIDMNT 63
ITNV EYE +AK+KLPKM++DYYASGAEDQWTL+ENR AFSRILFRPRILIDVS+I+M T
Sbjct: 4 ITNVSEYEQLAKQKLPKMIYDYYASGAEDQWTLKENREAFSRILFRPRILIDVSRINMAT 63
Query: 64 TVLGFKISMPIMIAPTAMQKMAHPEGEYXXXXXXXXXGTIMTLSSWSTSSVEEVASTGPG 123
VLGF ISMPIMIAP+AMQKMAHPEGE GTIMTLSSWSTSSVEEV S PG
Sbjct: 64 NVLGFNISMPIMIAPSAMQKMAHPEGELATARAASAAGTIMTLSSWSTSSVEEVNSAAPG 123
Query: 124 IRFFQLYVYKDRNVVAQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLTLKN 183
IRFFQLYVYKDRN+V QLVRRAE AGFKAIALTVDTPRLGRREADIKNRF LPP L LKN
Sbjct: 124 IRFFQLYVYKDRNIVRQLVRRAELAGFKAIALTVDTPRLGRREADIKNRFNLPPHLVLKN 183
Query: 184 FQGLDLGKMDEANDSGLAAYVAGQIDRSLSW---KWLQTITKLPILVKGVLTAEDXXXXX 240
F+ LDLGKMD+ NDSGLA+YVA Q+DRSLSW KWLQTIT LPILVKGV+TAED
Sbjct: 184 FEALDLGKMDKTNDSGLASYVASQVDRSLSWTDVKWLQTITSLPILVKGVMTAEDTRLAV 243
Query: 241 XXXXXXXXXSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGA 300
SNHGARQLDYVPATI LEEVV+ +GR+PVFLDGGVRRGTDVFKALALGA
Sbjct: 244 ESGAAGIIVSNHGARQLDYVPATISCLEEVVREAKGRLPVFLDGGVRRGTDVFKALALGA 303
Query: 301 SGIFIGRPVVYSLAAEGEKGVRRVLEMLREEFELAMALSGCRSLKEITRDHIVTEWD 357
SG+FIGRPV++SLA +GE GVR+VL+MLR+E EL MALSGC SL EITR+H++T+ D
Sbjct: 304 SGVFIGRPVLFSLAVDGEAGVRKVLQMLRDELELTMALSGCTSLAEITRNHVITDSD 360
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| UNIPROTKB|Q7FAS1 GLO3 "Peroxisomal (S)-2-hydroxy-acid oxidase GLO3" [Oryza sativa Japonica Group (taxid:39947)] | Back alignment and assigned GO terms |
|---|
Score = 1401 (498.2 bits), Expect = 2.6e-143, P = 2.6e-143
Identities = 273/357 (76%), Positives = 301/357 (84%)
Query: 4 ITNVMEYEAIAKEKLPKMVFDYYASGAEDQWTLQENRNAFSRILFRPRILIDVSKIDMNT 63
ITNV EYE +AK+KLPKM++DYYASGAEDQWTL+ENR AFSRILFRPRILIDVS+I+M T
Sbjct: 4 ITNVSEYEQLAKQKLPKMIYDYYASGAEDQWTLKENREAFSRILFRPRILIDVSRINMAT 63
Query: 64 TVLGFKISMPIMIAPTAMQKMAHPEGEYXXXXXXXXXGTIMTLSSWSTSSVEEVASTGPG 123
VLGF ISMPIMIAP+AMQKMAHPEGE GTIMTLSSWSTSSVEEV S PG
Sbjct: 64 NVLGFNISMPIMIAPSAMQKMAHPEGELATARAASAAGTIMTLSSWSTSSVEEVNSAAPG 123
Query: 124 IRFFQLYVYKDRNVVAQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLTLKN 183
IRFFQLYVYKDRN+V QLVRRAE AGFKAIALTVDTPRLGRREADIKNRF LPP L LKN
Sbjct: 124 IRFFQLYVYKDRNIVRQLVRRAELAGFKAIALTVDTPRLGRREADIKNRFNLPPHLVLKN 183
Query: 184 FQGLDLGKMDEANDSGLAAYVAGQIDRSLSW---KWLQTITKLPILVKGVLTAEDXXXXX 240
F+ LDLGKMD+ NDSGLA+YVA Q+DRSLSW KWLQTIT LPILVKGV+TAED
Sbjct: 184 FEALDLGKMDKTNDSGLASYVASQVDRSLSWTDVKWLQTITSLPILVKGVMTAEDTRLAV 243
Query: 241 XXXXXXXXXSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGA 300
SNHGARQLDYVPATI LEEVV+ +GR+PVFLDGGVRRGTDVFKALALGA
Sbjct: 244 ESGAAGIIVSNHGARQLDYVPATISCLEEVVREAKGRLPVFLDGGVRRGTDVFKALALGA 303
Query: 301 SGIFIGRPVVYSLAAEGEKGVRRVLEMLREEFELAMALSGCRSLKEITRDHIVTEWD 357
SG+FIGRPV++SLA +GE GVR+VL+MLR+E EL MALSGC SL EITR+H++T+ D
Sbjct: 304 SGVFIGRPVLFSLAVDGEAGVRKVLQMLRDELELTMALSGCTSLAEITRNHVITDSD 360
|
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| UNIPROTKB|Q01KC2 GLO2 "Peroxisomal (S)-2-hydroxy-acid oxidase GLO2" [Oryza sativa Indica Group (taxid:39946)] | Back alignment and assigned GO terms |
|---|
Score = 1241 (441.9 bits), Expect = 2.3e-126, P = 2.3e-126
Identities = 238/360 (66%), Positives = 281/360 (78%)
Query: 1 MGEITNVMEYEAIAKEKLPKMVFDYYASGAEDQWTLQENRNAFSRILFRPRILIDVSKID 60
M +TNV EYE +AK KLPKMV+D+YA AEDQWTL+EN AFSRILF+P +L+DVS ID
Sbjct: 1 MALVTNVCEYEELAKHKLPKMVYDFYAVDAEDQWTLRENSEAFSRILFQPVVLVDVSCID 60
Query: 61 MNTTVLGFKISMPIMIAPTAMQKMAHPEGEYXXXXXXXXXGTIMTLSSWSTSSVEEVAST 120
M+ +VLG+ ISMPIMIAPTA+ K+AHPEGE TIMTLSSWS+ S+EEV
Sbjct: 61 MSMSVLGYNISMPIMIAPTALHKLAHPEGELATARAAAAAETIMTLSSWSSCSIEEVNLA 120
Query: 121 GPGIRFFQLYVYKDRNVVAQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLT 180
GPG+RFFQL +YKDRN+V QL++RAE+AG+KAI LTVD P LGRREAD+KNRFTLP +
Sbjct: 121 GPGVRFFQLSIYKDRNLVQQLIQRAEKAGYKAIVLTVDAPWLGRREADVKNRFTLPQNVM 180
Query: 181 LKNFQGLDLGKMDEANDSGLAAYVAGQIDRSLSWK---WLQTITKLPILVKGVLTAEDXX 237
LK F+GLD GK+DE N SGLAAYVA QIDRS SWK WLQT+T LP+LVKG++TA+D
Sbjct: 181 LKIFEGLDQGKIDETNGSGLAAYVASQIDRSFSWKDIKWLQTVTSLPVLVKGIITAQDTR 240
Query: 238 XXXXXXXXXXXXSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALA 297
SNHG RQLDY+PATI LEEVV+ GR+PVF+D G RRGTDVFKALA
Sbjct: 241 IAIEYGAAGIIMSNHGGRQLDYLPATISCLEEVVREANGRVPVFIDSGFRRGTDVFKALA 300
Query: 298 LGASGIFIGRPVVYSLAAEGEKGVRRVLEMLREEFELAMALSGCRSLKEITRDHIVTEWD 357
LGASG+FIGRPV++SLA +GE GVR L MLR+E E+ MALSGC S+KEITR H+VTE D
Sbjct: 301 LGASGVFIGRPVLFSLAIDGEAGVRNALRMLRDELEITMALSGCTSVKEITRGHVVTESD 360
|
|
| UNIPROTKB|Q7XPR4 GLO2 "Peroxisomal (S)-2-hydroxy-acid oxidase GLO2" [Oryza sativa Japonica Group (taxid:39947)] | Back alignment and assigned GO terms |
|---|
Score = 1241 (441.9 bits), Expect = 2.3e-126, P = 2.3e-126
Identities = 238/360 (66%), Positives = 281/360 (78%)
Query: 1 MGEITNVMEYEAIAKEKLPKMVFDYYASGAEDQWTLQENRNAFSRILFRPRILIDVSKID 60
M +TNV EYE +AK KLPKMV+D+YA AEDQWTL+EN AFSRILF+P +L+DVS ID
Sbjct: 1 MALVTNVCEYEELAKHKLPKMVYDFYAVDAEDQWTLRENSEAFSRILFQPVVLVDVSCID 60
Query: 61 MNTTVLGFKISMPIMIAPTAMQKMAHPEGEYXXXXXXXXXGTIMTLSSWSTSSVEEVAST 120
M+ +VLG+ ISMPIMIAPTA+ K+AHPEGE TIMTLSSWS+ S+EEV
Sbjct: 61 MSMSVLGYNISMPIMIAPTALHKLAHPEGELATARAAAAAETIMTLSSWSSCSIEEVNLA 120
Query: 121 GPGIRFFQLYVYKDRNVVAQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLT 180
GPG+RFFQL +YKDRN+V QL++RAE+AG+KAI LTVD P LGRREAD+KNRFTLP +
Sbjct: 121 GPGVRFFQLSIYKDRNLVQQLIQRAEKAGYKAIVLTVDAPWLGRREADVKNRFTLPQNVM 180
Query: 181 LKNFQGLDLGKMDEANDSGLAAYVAGQIDRSLSWK---WLQTITKLPILVKGVLTAEDXX 237
LK F+GLD GK+DE N SGLAAYVA QIDRS SWK WLQT+T LP+LVKG++TA+D
Sbjct: 181 LKIFEGLDQGKIDETNGSGLAAYVASQIDRSFSWKDIKWLQTVTSLPVLVKGIITAQDTR 240
Query: 238 XXXXXXXXXXXXSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALA 297
SNHG RQLDY+PATI LEEVV+ GR+PVF+D G RRGTDVFKALA
Sbjct: 241 IAIEYGAAGIIMSNHGGRQLDYLPATISCLEEVVREANGRVPVFIDSGFRRGTDVFKALA 300
Query: 298 LGASGIFIGRPVVYSLAAEGEKGVRRVLEMLREEFELAMALSGCRSLKEITRDHIVTEWD 357
LGASG+FIGRPV++SLA +GE GVR L MLR+E E+ MALSGC S+KEITR H+VTE D
Sbjct: 301 LGASGVFIGRPVLFSLAIDGEAGVRNALRMLRDELEITMALSGCTSVKEITRGHVVTESD 360
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Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Annotation Transfer from SWISS-PROT Entries
Original result of BLAST against SWISS-PROT
| ID | Name | Annotated EC number | Identity | Query coverage | Hit coverage | RBH(Q2H) | RBH(H2Q) |
| B8B8K5 | GLO4_ORYSI | 1, ., 1, ., 3, ., 1, 5 | 0.5915 | 0.9536 | 0.9562 | N/A | no |
| B2FIJ0 | LLDD_STRMK | 1, ., 1, ., 2, ., 3 | 0.368 | 0.9564 | 0.9261 | yes | no |
| Q54E41 | HAOX_DICDI | 1, ., 1, ., 3, ., 1, 5 | 0.5232 | 0.9536 | 0.9020 | yes | no |
| Q9LRR9 | GLO1_ARATH | 1, ., 1, ., 3, ., 1, 5 | 0.9021 | 0.9891 | 0.9891 | yes | no |
| Q01KC2 | GLO2_ORYSI | 1, ., 1, ., 3, ., 1, 5 | 0.7083 | 0.9727 | 0.9701 | N/A | no |
| B7M492 | LLDD_ECO8A | 1, ., 1, ., 2, ., 3 | 0.3584 | 0.9673 | 0.8964 | yes | no |
| P20932 | MDLB_PSEPU | 1, ., 1, ., 9, 9, ., 3, 1 | 0.3733 | 0.9536 | 0.8905 | yes | no |
| B7L725 | LLDD_ECO55 | 1, ., 1, ., 2, ., 3 | 0.3584 | 0.9673 | 0.8964 | yes | no |
| Q87G18 | LLDD_VIBPA | 1, ., 1, ., 2, ., 3 | 0.3556 | 0.9536 | 0.9234 | yes | no |
| B8AUI3 | GLO3_ORYSI | 1, ., 1, ., 3, ., 1, 5 | 0.8138 | 0.9727 | 0.9727 | N/A | no |
| Q3YVX0 | LLDD_SHISS | 1, ., 1, ., 2, ., 3 | 0.3584 | 0.9673 | 0.8964 | yes | no |
| B7NER0 | LLDD_ECOLU | 1, ., 1, ., 2, ., 3 | 0.3584 | 0.9673 | 0.8964 | yes | no |
| A7IMB0 | LLDD_XANP2 | 1, ., 1, ., 2, ., 3 | 0.3643 | 0.9782 | 0.9252 | yes | no |
| A7MNF6 | LLDD_CROS8 | 1, ., 1, ., 2, ., 3 | 0.3636 | 0.9536 | 0.8728 | yes | no |
| B8B7C5 | GLO5_ORYSI | 1, ., 1, ., 3, ., 1, 5 | 0.8583 | 0.9727 | 0.9674 | N/A | no |
| Q6YT73 | GLO5_ORYSJ | 1, ., 1, ., 3, ., 1, 5 | 0.8583 | 0.9727 | 0.9674 | no | no |
| Q7XPR4 | GLO2_ORYSJ | 1, ., 1, ., 3, ., 1, 5 | 0.7083 | 0.9727 | 0.9701 | no | no |
| B7LTL2 | LLDD_ESCF3 | 1, ., 1, ., 2, ., 3 | 0.3597 | 0.9645 | 0.8939 | yes | no |
| Q0SYD1 | LLDD_SHIF8 | 1, ., 1, ., 2, ., 3 | 0.3584 | 0.9673 | 0.8964 | yes | no |
| B1LK44 | LLDD_ECOSM | 1, ., 1, ., 2, ., 3 | 0.3614 | 0.9509 | 0.8813 | yes | no |
| A8A670 | LLDD_ECOHS | 1, ., 1, ., 2, ., 3 | 0.3584 | 0.9673 | 0.8964 | yes | no |
| O49506 | GLO5_ARATH | 1, ., 1, ., 3, ., 1, 5 | 0.8547 | 0.9673 | 0.9646 | no | no |
| Q10CE4 | GLO1_ORYSJ | 1, ., 1, ., 3, ., 1, 5 | 0.8486 | 0.9972 | 0.9918 | yes | no |
| A7ZTF9 | LLDD_ECO24 | 1, ., 1, ., 2, ., 3 | 0.3584 | 0.9673 | 0.8964 | yes | no |
| B1IZI5 | LLDD_ECOLC | 1, ., 1, ., 2, ., 3 | 0.3584 | 0.9673 | 0.8964 | yes | no |
| Q9LRS0 | GLO2_ARATH | 1, ., 1, ., 3, ., 1, 5 | 0.8804 | 0.9891 | 0.9891 | yes | no |
| B6I3I4 | LLDD_ECOSE | 1, ., 1, ., 2, ., 3 | 0.3584 | 0.9673 | 0.8964 | yes | no |
| B8AKX6 | GLO1_ORYSI | 1, ., 1, ., 3, ., 1, 5 | 0.8486 | 0.9972 | 0.9918 | N/A | no |
| B1X8M0 | LLDD_ECODH | 1, ., 1, ., 2, ., 3 | 0.3584 | 0.9673 | 0.8964 | yes | no |
| Q83PP7 | LLDD_SHIFL | 1, ., 1, ., 2, ., 3 | 0.3584 | 0.9673 | 0.8964 | yes | no |
| A1AHE2 | LLDD_ECOK1 | 1, ., 1, ., 2, ., 3 | 0.3584 | 0.9673 | 0.8964 | yes | no |
| Q9UJM8 | HAOX1_HUMAN | 1, ., 1, ., 3, ., 1, 5 | 0.58 | 0.9346 | 0.9270 | yes | no |
| Q7FAS1 | GLO3_ORYSJ | 1, ., 1, ., 3, ., 1, 5 | 0.8138 | 0.9727 | 0.9727 | no | no |
| Q6DAY3 | LLDD_ERWCT | 1, ., 1, ., 2, ., 3 | 0.3716 | 0.9536 | 0.9067 | yes | no |
| P05414 | GOX_SPIOL | 1, ., 1, ., 3, ., 1, 5 | 0.8804 | 0.9945 | 0.9891 | N/A | no |
| Q3ZBW2 | HAOX2_BOVIN | 1, ., 1, ., 3, ., 1, 5 | 0.4560 | 0.9318 | 0.9688 | yes | no |
| Q9WU19 | HAOX1_MOUSE | 1, ., 1, ., 3, ., 1, 5 | 0.5637 | 0.9427 | 0.9351 | yes | no |
| B2U5C2 | LLDD_SHIB3 | 1, ., 1, ., 2, ., 3 | 0.3584 | 0.9673 | 0.8964 | yes | no |
| Q329P9 | LLDD_SHIDS | 1, ., 1, ., 2, ., 3 | 0.3584 | 0.9673 | 0.8964 | yes | no |
| B5YWA7 | LLDD_ECO5E | 1, ., 1, ., 2, ., 3 | 0.3584 | 0.9673 | 0.8964 | yes | no |
EC Number Prediction by Ezypred Server
Original result from Ezypred Server
Fail to connect to Ezypred Server
EC Number Prediction by EFICAz Software
| Prediction Level | EC number | Confidence of Prediction |
| 3rd Layer | 1.1.3 | 0.998 |
| 3rd Layer | 1.1.3.15 | 0.994 |
Prediction of Functionally Associated Proteins
Functionally Associated Proteins Detected by STRING
Original result from the STRING server
| Your Input: |  |
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 | scaffold_202808.1 | annotation not avaliable (369 aa) | |||||||||
(Arabidopsis lyrata) | |||||||||||
Predicted Functional Partners: | |||||||||||
 | fgenesh2_kg.3__3006__AT2G13360.2 | annotation not avaliable (401 aa) | • | • | • | • | 0.448 | ||||
 | Al_scaffold_0006_297 | Malate synthase Fragment (EC 2.3.3.9) (562 aa) | • | • | 0.431 | ||||||
 | fgenesh2_kg.6__602__AT5G06580.1 | annotation not avaliable (566 aa) | • | • | • | 0.421 | |||||
 | fgenesh2_kg.3__2397__AT3G21720.1 | annotation not avaliable (576 aa) | • | • | 0.415 | ||||||
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST
Original result of RPS-BLAST against CDD database part I
| ID | Alignment Graph | Length |
Definition |
E-value |
| Query | 367 | |||
| PLN02493 | 367 | PLN02493, PLN02493, probable peroxisomal (S)-2-hyd | 0.0 | |
| PLN02979 | 366 | PLN02979, PLN02979, glycolate oxidase | 0.0 | |
| PLN02535 | 364 | PLN02535, PLN02535, glycolate oxidase | 0.0 | |
| cd02809 | 299 | cd02809, alpha_hydroxyacid_oxid_FMN, Family of hom | 1e-165 | |
| pfam01070 | 302 | pfam01070, FMN_dh, FMN-dependent dehydrogenase | 1e-164 | |
| cd02922 | 344 | cd02922, FCB2_FMN, Flavocytochrome b2 (FCB2) FMN-b | 1e-137 | |
| COG1304 | 360 | COG1304, idi, Isopentenyl diphosphate isomerase (B | 1e-123 | |
| cd03332 | 383 | cd03332, LMO_FMN, L-Lactate 2-monooxygenase (LMO) | 1e-117 | |
| cd04737 | 351 | cd04737, LOX_like_FMN, L-Lactate oxidase (LOX) FMN | 1e-115 | |
| cd04736 | 361 | cd04736, MDH_FMN, Mandelate dehydrogenase (MDH)-li | 2e-99 | |
| PRK11197 | 381 | PRK11197, lldD, L-lactate dehydrogenase; Provision | 2e-87 | |
| TIGR02708 | 367 | TIGR02708, L_lactate_ox, L-lactate oxidase | 2e-83 | |
| TIGR03966 | 385 | TIGR03966, actino_HemFlav, heme/flavin dehydrogena | 4e-77 | |
| TIGR02151 | 333 | TIGR02151, IPP_isom_2, isopentenyl-diphosphate del | 2e-23 | |
| PRK05437 | 352 | PRK05437, PRK05437, isopentenyl pyrophosphate isom | 2e-16 | |
| cd02811 | 326 | cd02811, IDI-2_FMN, Isopentenyl-diphosphate:dimeth | 4e-14 | |
| cd02808 | 392 | cd02808, GltS_FMN, Glutamate synthase (GltS) FMN-b | 2e-09 | |
| cd04722 | 200 | cd04722, TIM_phosphate_binding, TIM barrel protein | 4e-08 | |
| cd04730 | 236 | cd04730, NPD_like, 2-Nitropropane dioxygenase (NPD | 1e-07 | |
| cd00381 | 325 | cd00381, IMPDH, IMPDH: The catalytic domain of the | 2e-06 | |
| TIGR01302 | 450 | TIGR01302, IMP_dehydrog, inosine-5'-monophosphate | 3e-06 | |
| TIGR01304 | 369 | TIGR01304, IMP_DH_rel_2, IMP dehydrogenase family | 6e-06 | |
| PRK08649 | 368 | PRK08649, PRK08649, inosine 5-monophosphate dehydr | 4e-05 | |
| COG0167 | 310 | COG0167, PyrD, Dihydroorotate dehydrogenase [Nucle | 5e-05 | |
| PRK05567 | 486 | PRK05567, PRK05567, inosine 5'-monophosphate dehyd | 7e-05 | |
| COG2070 | 336 | COG2070, COG2070, Dioxygenases related to 2-nitrop | 7e-05 | |
| PLN02826 | 409 | PLN02826, PLN02826, dihydroorotate dehydrogenase | 1e-04 | |
| COG0069 | 485 | COG0069, GltB, Glutamate synthase domain 2 [Amino | 1e-04 | |
| pfam01645 | 367 | pfam01645, Glu_synthase, Conserved region in gluta | 2e-04 | |
| PTZ00314 | 495 | PTZ00314, PTZ00314, inosine-5'-monophosphate dehyd | 2e-04 | |
| pfam03060 | 329 | pfam03060, NMO, Nitronate monooxygenase | 4e-04 | |
| COG0042 | 323 | COG0042, COG0042, tRNA-dihydrouridine synthase [Tr | 5e-04 | |
| pfam00478 | 467 | pfam00478, IMPDH, IMP dehydrogenase / GMP reductas | 7e-04 | |
| PRK05437 | 352 | PRK05437, PRK05437, isopentenyl pyrophosphate isom | 0.002 | |
| cd02801 | 231 | cd02801, DUS_like_FMN, Dihydrouridine synthase-lik | 0.002 | |
| cd02810 | 289 | cd02810, DHOD_DHPD_FMN, Dihydroorotate dehydrogena | 0.003 |
| >gnl|CDD|166134 PLN02493, PLN02493, probable peroxisomal (S)-2-hydroxy-acid oxidase | Back alignment and domain information |
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Score = 640 bits (1651), Expect = 0.0
Identities = 332/368 (90%), Positives = 351/368 (95%), Gaps = 5/368 (1%)
Query: 3 EITNVMEYEAIAKEKLPKMVFDYYASGAEDQWTLQENRNAFSRILFRPRILIDVSKIDMN 62
EITNV EY+AIAK+KLPKMV+DYYASGAEDQWTLQENRNAF+RILFRPRILIDVSKIDM
Sbjct: 2 EITNVTEYDAIAKQKLPKMVYDYYASGAEDQWTLQENRNAFARILFRPRILIDVSKIDMT 61
Query: 63 TTVLGFKISMPIMIAPTAMQKMAHPEGEYATARAASAAGTIMTLSSWSTSSVEEVASTGP 122
TTVLGFKISMPIM+APTAMQKMAHP+GEYATARAASAAGTIMTLSSW+TSSVEEVASTGP
Sbjct: 62 TTVLGFKISMPIMVAPTAMQKMAHPDGEYATARAASAAGTIMTLSSWATSSVEEVASTGP 121
Query: 123 GIRFFQLYVYKDRNVVAQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLTLK 182
GIRFFQLYVYK+RNVV QLVRRAERAGFKAIALTVDTPRLGRRE+DIKNRFTLPP LTLK
Sbjct: 122 GIRFFQLYVYKNRNVVEQLVRRAERAGFKAIALTVDTPRLGRRESDIKNRFTLPPNLTLK 181
Query: 183 NFQGLDLGKMDEANDSGLAAYVAGQIDRSLSWK---WLQTITKLPILVKGVLTAEDARIA 239
NF+GLDLGKMDEANDSGLA+YVAGQIDR+LSWK WLQTITKLPILVKGVLT EDARIA
Sbjct: 182 NFEGLDLGKMDEANDSGLASYVAGQIDRTLSWKDVQWLQTITKLPILVKGVLTGEDARIA 241
Query: 240 VQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALG 299
+QAGAAGIIVSNHGARQLDYVPATI ALEEVVKATQGRIPVFLDGGVRRGTDVFKALALG
Sbjct: 242 IQAGAAGIIVSNHGARQLDYVPATISALEEVVKATQGRIPVFLDGGVRRGTDVFKALALG 301
Query: 300 ASGIFIGRPVVYSLAAEGEKGVRRVLEMLREEFELAMALSGCRSLKEITRDHIVTEWDAS 359
ASGIFIGRPVV+SLAAEGE GVR+VL+MLR+EFEL MALSGCRSLKEI+R+HI TEWD
Sbjct: 302 ASGIFIGRPVVFSLAAEGEAGVRKVLQMLRDEFELTMALSGCRSLKEISRNHITTEWDT- 360
Query: 360 LPRPVPRL 367
PRP RL
Sbjct: 361 -PRPSARL 367
|
Length = 367 |
| >gnl|CDD|166620 PLN02979, PLN02979, glycolate oxidase | Back alignment and domain information |
|---|
Score = 585 bits (1509), Expect = 0.0
Identities = 292/323 (90%), Positives = 307/323 (95%), Gaps = 5/323 (1%)
Query: 48 FRPRILIDVSKIDMNTTVLGFKISMPIMIAPTAMQKMAHPEGEYATARAASAAGTIMTLS 107
FRPRILIDVSKIDM TTVLGFKISMPIM+APTAMQKMAHP+GEYATARAASAAGTIMTLS
Sbjct: 46 FRPRILIDVSKIDMTTTVLGFKISMPIMVAPTAMQKMAHPDGEYATARAASAAGTIMTLS 105
Query: 108 SWSTSSVEEVASTGPGIRFFQLYVYKDRNVVAQLVRRAERAGFKAIALTVDTPRLGRREA 167
SW+TSSVEEVASTGPGIRFFQLYVYK+RNVV QLVRRAERAGFKAIALTVDTPRLGRRE+
Sbjct: 106 SWATSSVEEVASTGPGIRFFQLYVYKNRNVVEQLVRRAERAGFKAIALTVDTPRLGRRES 165
Query: 168 DIKNRFTLPPFLTLKNFQGLDLGKMDEANDSGLAAYVAGQIDRSLSWK---WLQTITKLP 224
DIKNRFTLPP LTLKNF+GLDLGKMDEANDSGLA+YVAGQIDR+LSWK WLQTITKLP
Sbjct: 166 DIKNRFTLPPNLTLKNFEGLDLGKMDEANDSGLASYVAGQIDRTLSWKDVQWLQTITKLP 225
Query: 225 ILVKGVLTAEDARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDG 284
ILVKGVLT EDARIA+QAGAAGIIVSNHGARQLDYVPATI ALEEVVKATQGRIPVFLDG
Sbjct: 226 ILVKGVLTGEDARIAIQAGAAGIIVSNHGARQLDYVPATISALEEVVKATQGRIPVFLDG 285
Query: 285 GVRRGTDVFKALALGASGIFIGRPVVYSLAAEGEKGVRRVLEMLREEFELAMALSGCRSL 344
GVRRGTDVFKALALGASGIFIGRPVV+SLAAEGE GVR+VL+MLR+EFEL MALSGCRSL
Sbjct: 286 GVRRGTDVFKALALGASGIFIGRPVVFSLAAEGEAGVRKVLQMLRDEFELTMALSGCRSL 345
Query: 345 KEITRDHIVTEWDASLPRPVPRL 367
KEI+R+HI TEWD PRP RL
Sbjct: 346 KEISRNHITTEWDT--PRPSARL 366
|
Length = 366 |
| >gnl|CDD|215294 PLN02535, PLN02535, glycolate oxidase | Back alignment and domain information |
|---|
Score = 526 bits (1356), Expect = 0.0
Identities = 231/360 (64%), Positives = 280/360 (77%), Gaps = 6/360 (1%)
Query: 1 MGEITNVMEYEAIAKEKLPKMVFDYYASGAEDQWTLQENRNAFSRILFRPRILIDVSKID 60
EI NV E++ +AK+ LPKM +D+YA GAEDQ TL+EN AF RI FRPR+L+DVSKID
Sbjct: 2 ADEIVNVNEFQELAKQALPKMYYDFYAGGAEDQHTLKENVQAFRRITFRPRVLVDVSKID 61
Query: 61 MNTTVLGFKISMPIMIAPTAMQKMAHPEGEYATARAASAAGTIMTLSSWSTSSVEEVAST 120
M+TT+LG+ IS PIMIAPTAM K+AHPEGE ATARAA+A TIM LS ++ +VEEVAS+
Sbjct: 62 MSTTILGYTISAPIMIAPTAMHKLAHPEGEIATARAAAACNTIMVLSFMASCTVEEVASS 121
Query: 121 GPGIRFFQLYVYKDRNVVAQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLT 180
+RF QLYVYK R++ AQLV+RAE+ G+KAI LT D PRLGRREADIKN+ P
Sbjct: 122 CNAVRFLQLYVYKRRDIAAQLVQRAEKNGYKAIVLTADVPRLGRREADIKNKMISP---Q 178
Query: 181 LKNFQGLDLGKMDEANDSGLAAYVAGQIDRSLSWK---WLQTITKLPILVKGVLTAEDAR 237
LKNF+GL ++ SGL A+ + D SLSWK WL++IT LPIL+KGVLT EDA
Sbjct: 179 LKNFEGLLSTEVVSDKGSGLEAFASETFDASLSWKDIEWLRSITNLPILIKGVLTREDAI 238
Query: 238 IAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALA 297
AV+ G AGIIVSNHGARQLDY PATI LEEVV+A GR+PV LDGGVRRGTDVFKALA
Sbjct: 239 KAVEVGVAGIIVSNHGARQLDYSPATISVLEEVVQAVGGRVPVLLDGGVRRGTDVFKALA 298
Query: 298 LGASGIFIGRPVVYSLAAEGEKGVRRVLEMLREEFELAMALSGCRSLKEITRDHIVTEWD 357
LGA + +GRPV+Y LAA+GE GVR+V+EML++E E+ MALSGC S+K+ITR H+ TE +
Sbjct: 299 LGAQAVLVGRPVIYGLAAKGEDGVRKVIEMLKDELEITMALSGCPSVKDITRSHVRTERE 358
|
Length = 364 |
| >gnl|CDD|239203 cd02809, alpha_hydroxyacid_oxid_FMN, Family of homologous FMN-dependent alpha-hydroxyacid oxidizing enzymes | Back alignment and domain information |
|---|
Score = 462 bits (1192), Expect = e-165
Identities = 180/344 (52%), Positives = 221/344 (64%), Gaps = 49/344 (14%)
Query: 9 EYEAIAKEKLPKMVFDYYASGAEDQWTLQENRNAFSRILFRPRILIDVSKIDMNTTVLGF 68
+ A+A+ +LPK VFDY GA D+ TL+ NR AF RI RPR+L DVSK D +TT+LG
Sbjct: 2 DLRALARRRLPKAVFDYIDGGAGDEVTLRRNRAAFDRIRLRPRVLRDVSKRDTSTTLLGQ 61
Query: 69 KISMPIMIAPTAMQKMAHPEGEYATARAASAAGTIMTLSSWSTSSVEEVASTGPGIRFFQ 128
K++MP IAPT +Q +AHP+GE ATARAA+AAG TLS+ ST+S+EEVA+ PG R+FQ
Sbjct: 62 KLAMPFGIAPTGLQGLAHPDGELATARAAAAAGIPFTLSTVSTTSLEEVAAAAPGPRWFQ 121
Query: 129 LYVYKDRNVVAQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLTLKNFQGLD 188
LYV +DR + L+RRAE AG+KA+ LTVDTP LGRR
Sbjct: 122 LYVPRDREITEDLLRRAEAAGYKALVLTVDTPVLGRR----------------------- 158
Query: 189 LGKMDEANDSGLAAYVAGQIDRSLSW---KWLQTITKLPILVKGVLTAEDARIAVQAGAA 245
L+W WL++ K P+++KG+LT EDA AV AGA
Sbjct: 159 -----------------------LTWDDLAWLRSQWKGPLILKGILTPEDALRAVDAGAD 195
Query: 246 GIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFI 305
GI+VSNHG RQLD PATI AL E+V A GRI V LDGG+RRGTDV KALALGA + I
Sbjct: 196 GIVVSNHGGRQLDGAPATIDALPEIVAAVGGRIEVLLDGGIRRGTDVLKALALGADAVLI 255
Query: 306 GRPVVYSLAAEGEKGVRRVLEMLREEFELAMALSGCRSLKEITR 349
GRP +Y LAA GE GV VLE+LR+E E AMAL GC SL ++
Sbjct: 256 GRPFLYGLAAGGEAGVAHVLEILRDELERAMALLGCASLADLDP 299
|
This family occurs in both prokaryotes and eukaryotes. Members of this family include flavocytochrome b2 (FCB2), glycolate oxidase (GOX), lactate monooxygenase (LMO), mandelate dehydrogenase (MDH), and long chain hydroxyacid oxidase (LCHAO). In green plants, glycolate oxidase is one of the key enzymes in photorespiration where it oxidizes glycolate to glyoxylate. LMO catalyzes the oxidation of L-lactate to acetate and carbon dioxide. MDH oxidizes (S)-mandelate to phenylglyoxalate. It is an enzyme in the mandelate pathway that occurs in several strains of Pseudomonas which converts (R)-mandelate to benzoate. Length = 299 |
| >gnl|CDD|216281 pfam01070, FMN_dh, FMN-dependent dehydrogenase | Back alignment and domain information |
|---|
Score = 460 bits (1187), Expect = e-164
Identities = 168/344 (48%), Positives = 215/344 (62%), Gaps = 45/344 (13%)
Query: 14 AKEKLPKMVFDYYASGAEDQWTLQENRNAFSRILFRPRILIDVSKIDMNTTVLGFKISMP 73
A+ +LPK FDY GA D+ TL+ NR AF RI RPR+L DVS D++TT+LG ++S+P
Sbjct: 1 ARRRLPKFAFDYIDGGAGDEVTLRRNRAAFDRIRLRPRVLRDVSDRDLSTTLLGQRLSLP 60
Query: 74 IMIAPTAMQKMAHPEGEYATARAASAAGTIMTLSSWSTSSVEEVASTGPGIRFFQLYVYK 133
IAPT MQ +AHP+GE A ARAA+AAG LS+ S++S+EEVA+ G +FQLYV K
Sbjct: 61 FGIAPTGMQGLAHPDGELALARAAAAAGIPFVLSTVSSTSLEEVAAAAGGPLWFQLYVPK 120
Query: 134 DRNVVAQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLTLKNFQGLDLGKMD 193
DR + L+ RAE AG+KA+ LTVDTP LG RE D++
Sbjct: 121 DRELTEDLLERAEAAGYKALVLTVDTPVLGNRERDLR----------------------- 157
Query: 194 EANDSGLAAYVAGQIDRSLSW---KWLQTITKLPILVKGVLTAEDARIAVQAGAAGIIVS 250
+W WL+ K P++VKG+L+ EDA+ AV+AG GI+VS
Sbjct: 158 -------------------TWDDLAWLRDQWKGPLVVKGILSPEDAKRAVEAGVDGIVVS 198
Query: 251 NHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFIGRPVV 310
NHG RQLD PATI AL E+V A GRIPV +DGG+RRGTDV KALALGA + +GRP +
Sbjct: 199 NHGGRQLDGAPATIDALPEIVAAVGGRIPVLVDGGIRRGTDVLKALALGADAVLLGRPFL 258
Query: 311 YSLAAEGEKGVRRVLEMLREEFELAMALSGCRSLKEITRDHIVT 354
Y LAA GE GV LE+LR+E E MAL GC S+ ++T +
Sbjct: 259 YGLAAGGEAGVAHALEILRDELERTMALLGCTSIADLTPSLLRR 302
|
Length = 302 |
| >gnl|CDD|239238 cd02922, FCB2_FMN, Flavocytochrome b2 (FCB2) FMN-binding domain | Back alignment and domain information |
|---|
Score = 393 bits (1011), Expect = e-137
Identities = 160/347 (46%), Positives = 223/347 (64%), Gaps = 15/347 (4%)
Query: 9 EYEAIAKEKLPKMVFDYYASGAEDQWTLQENRNAFSRILFRPRILIDVSKIDMNTTVLGF 68
++EA AK+ L K + YY+SGA+D+ TL+EN AF RI FRPR+L DV K+D +TT+LG
Sbjct: 2 DFEAAAKKYLSKKAWAYYSSGADDEITLRENLEAFQRIRFRPRVLRDVEKVDTSTTILGH 61
Query: 69 KISMPIMIAPTAMQKMAHPEGEYATARAASAAGTIMTLSSWSTSSVEEV--ASTGPGIRF 126
K+S+P I+P A+ K+AHP+GE ARAA G + +S+ ++ S+EE+ A F
Sbjct: 62 KVSLPFFISPAALAKLAHPDGELNLARAAGKHGILQMISTNASCSLEEIVDARPPDQPLF 121
Query: 127 FQLYVYKDRNVVAQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLTLKNFQG 186
FQLYV KDR +L++RAE+ G KAI LTVD P LG+RE D + +
Sbjct: 122 FQLYVNKDRTKTEELLKRAEKLGAKAIFLTVDAPVLGKRERDERLKAEEAV-------SD 174
Query: 187 LDLGKMDEANDSGLAAYVAGQIDRSLSW---KWLQTITKLPILVKGVLTAEDARIAVQAG 243
GK +A G ++G ID +L+W KWL+ TKLPI++KGV T EDA +A + G
Sbjct: 175 GPAGKKTKAKGGGAGRAMSGFIDPTLTWDDIKWLRKHTKLPIVLKGVQTVEDAVLAAEYG 234
Query: 244 AAGIIVSNHGARQLDYVPATIMALEEVVK-ATQ--GRIPVFLDGGVRRGTDVFKALALGA 300
GI++SNHG RQLD PA I L E+ K + +I V++DGGVRRGTDV KAL LGA
Sbjct: 235 VDGIVLSNHGGRQLDTAPAPIEVLLEIRKHCPEVFDKIEVYVDGGVRRGTDVLKALCLGA 294
Query: 301 SGIFIGRPVVYSLAAEGEKGVRRVLEMLREEFELAMALSGCRSLKEI 347
+ +GRP +Y+L+A GE+GV + +++L++E E M L G SL ++
Sbjct: 295 KAVGLGRPFLYALSAYGEEGVEKAIQILKDEIETTMRLLGVTSLDQL 341
|
FCB2 (AKA L-lactate:cytochrome c oxidoreductase) is a respiratory enzyme located in the intermembrane space of fungal mitochondria which catalyzes the oxidation of L-lactate to pyruvate. FCB2 also participates in a short electron-transport chain involving cytochrome c and cytochrome oxidase which ultimately directs the reducing equivalents gained from L-lactate oxidation to oxygen, yielding one molecule of ATP for every L-lactate molecule consumed. FCB2 is composed of 2 domains: a C-terminal flavin-binding domain, which includes the active site for lacate oxidation, and an N-terminal b2-cytochrome domain, required for efficient cytochrome c reduction. FCB2 is a homotetramer and contains two noncovalently bound cofactors, FMN and heme per subunit. Length = 344 |
| >gnl|CDD|224223 COG1304, idi, Isopentenyl diphosphate isomerase (BS_ypgA, MTH48 and related proteins) [Coenzyme transport and metabolism] | Back alignment and domain information |
|---|
Score = 358 bits (922), Expect = e-123
Identities = 156/356 (43%), Positives = 207/356 (58%), Gaps = 16/356 (4%)
Query: 7 VMEYEAIAKEKLPKMVFDYYASGAEDQWTLQENRNAFSRILFRPRILIDVSKIDMNTTVL 66
V + A+ +LPK F Y GAED+ TL+ NR AF I RPR+L +V ID++TT L
Sbjct: 1 VADLRRAAQRRLPK-AFHYIDGGAEDEVTLRRNREAFEDIALRPRVLPEVDDIDLSTTFL 59
Query: 67 GFKISMPIMIAPTAMQKMAHPEGEYATARAASAAGTIMTLSSWSTSSVEEVASTGPGIRF 126
G K+S PI+IAP +AHPEGE A+ A+AAG LS+ + +EEVA+ P
Sbjct: 60 GQKLSAPIIIAPMTGGGLAHPEGEVINAKLAAAAGEPFILSTVGSQRIEEVAAAPP---- 115
Query: 127 FQLYVYKDRNVVAQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLTLKNFQG 186
FQLY KDR LV RA AG K + LTVD+P G RE D N + P N
Sbjct: 116 FQLYFSKDREFAPNLVDRAANAGAKQLVLTVDSPVGGERERDAVNGISAPALAIHLNV-- 173
Query: 187 LDLGKMDEANDSG------LAAYVAGQIDRSLSWK---WLQTITKLPILVKGVLTAEDAR 237
L E + G +A YV+ +S + + P+++KG+L EDA
Sbjct: 174 LQEATQPEGDRDGKGGLDSIAEYVSALSVPVISKEDGAGISKEWAGPLVLKGILAPEDAA 233
Query: 238 IAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALA 297
A GA GI VSNHG RQLD+ +T +L E+V+A RI V DGG+R G DV KALA
Sbjct: 234 GAGGTGADGIEVSNHGGRQLDWGISTADSLPEIVEAVGDRIEVIADGGIRSGLDVAKALA 293
Query: 298 LGASGIFIGRPVVYSLAAEGEKGVRRVLEMLREEFELAMALSGCRSLKEITRDHIV 353
LGA + IGRP +Y LAA GE GV RVLE++R+E ++AMAL+G ++++E+ R +V
Sbjct: 294 LGADAVGIGRPFLYGLAAGGEAGVERVLEIIRKELKIAMALTGAKNIEELKRVPLV 349
|
Length = 360 |
| >gnl|CDD|239448 cd03332, LMO_FMN, L-Lactate 2-monooxygenase (LMO) FMN-binding domain | Back alignment and domain information |
|---|
Score = 343 bits (883), Expect = e-117
Identities = 151/367 (41%), Positives = 219/367 (59%), Gaps = 21/367 (5%)
Query: 5 TNVMEYEAIAKEKLPKMVFDYYASGAEDQWTLQENRNAFSRILFRPRILIDVSKIDMNTT 64
+ EA+A+E L F Y A GA + T + NR+AFSR PR+L V++ D++
Sbjct: 19 VDPERLEALAREALSPGAFAYVAGGAGSESTARANRDAFSRWRIVPRMLRGVTERDLSVE 78
Query: 65 VLGFKISMPIMIAPTAMQKMAHPEGEYATARAASAAGTIMTLSSWSTSSVEEVA-STGPG 123
+ G ++ P+++AP +Q++ HP+ E ATARAA+ G LS+ S+SS+E+VA + G
Sbjct: 79 LFGRTLAAPLLLAPIGVQELFHPDAELATARAAAELGVPYILSTASSSSIEDVAAAAGDA 138
Query: 124 IRFFQLYVYKDRNVVAQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLT--- 180
R+FQLY KD ++ L+RRAE+AG++ + +T+DT LG R D+ + PFL
Sbjct: 139 PRWFQLYWPKDDDLTESLLRRAEKAGYRVLVVTLDTWSLGWRPRDLDLGYL--PFLRGIG 196
Query: 181 LKNF-------QGLD--LGKMDEANDSGLAA---YVAGQIDRSLSW---KWLQTITKLPI 225
+ N+ + L +G+ EA AA +V+ SL+W +L+ T LPI
Sbjct: 197 IANYFSDPVFRKKLAEPVGEDPEAPPPMEAAVARFVSVFSGPSLTWEDLAFLREWTDLPI 256
Query: 226 LVKGVLTAEDARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGG 285
++KG+L +DAR AV+AG G++VSNHG RQ+D A + AL E+V+A R+ V D G
Sbjct: 257 VLKGILHPDDARRAVEAGVDGVVVSNHGGRQVDGSIAALDALPEIVEAVGDRLTVLFDSG 316
Query: 286 VRRGTDVFKALALGASGIFIGRPVVYSLAAEGEKGVRRVLEMLREEFELAMALSGCRSLK 345
VR G D+ KALALGA + IGRP Y LA GE GV VL L E +L M L+G RS+
Sbjct: 317 VRTGADIMKALALGAKAVLIGRPYAYGLALGGEDGVEHVLRNLLAELDLTMGLAGIRSIA 376
Query: 346 EITRDHI 352
E+TRD +
Sbjct: 377 ELTRDAL 383
|
LMO is a FMN-containing enzyme that catalyzes the conversion of L-lactate and oxygen to acetate, carbon dioxide, and water. LMO is a member of the family of alpha-hydroxy acid oxidases. It is thought to be a homooctamer with two- and four- fold axes in the center of the octamer. Length = 383 |
| >gnl|CDD|240088 cd04737, LOX_like_FMN, L-Lactate oxidase (LOX) FMN-binding domain | Back alignment and domain information |
|---|
Score = 337 bits (867), Expect = e-115
Identities = 148/351 (42%), Positives = 211/351 (60%), Gaps = 10/351 (2%)
Query: 3 EITNVMEYEAIAKEKLPKMVFDYYASGAEDQWTLQENRNAFSRILFRPRILIDVSKIDMN 62
+I N+ + EA AK+ +PK F Y A G+ED+WTL+EN AF+ PR+L V D +
Sbjct: 4 DIINLYDLEAEAKKVIPKGAFGYIAGGSEDEWTLRENTRAFNHKQIVPRVLQGVESPDTS 63
Query: 63 TTVLGFKISMPIMIAPTAMQKMAHPEGEYATARAASAAGTIMTLSSWSTSSVEEVASTGP 122
T +LG K+ PI++AP A +AH GE ATAR + G++ ++S++S +S+EE+A
Sbjct: 64 TELLGIKLKTPIIMAPIAAHGLAHATGEVATARGMAEVGSLFSISTYSNTSLEEIAKASN 123
Query: 123 GI-RFFQLYVYKDRNVVAQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLTL 181
G ++FQLY+ KD L+ RA+ AG KAI LT D G READI+N+F P +
Sbjct: 124 GGPKWFQLYMSKDDGFNRSLLDRAKAAGAKAIILTADATVGGNREADIRNKFQFP--FGM 181
Query: 182 KNFQGLDLGKMDEANDSGLAAYVAGQIDRSLSWKWLQTITK---LPILVKGVLTAEDARI 238
N G S + + LS ++ I K LP++VKG+ + EDA +
Sbjct: 182 PNLNHFSEGTGKGKGIS----EIYAAAKQKLSPADIEFIAKISGLPVIVKGIQSPEDADV 237
Query: 239 AVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALAL 298
A+ AGA GI VSNHG RQLD PA+ +L E+ +A R+P+ D GVRRG VFKALA
Sbjct: 238 AINAGADGIWVSNHGGRQLDGGPASFDSLPEIAEAVNHRVPIIFDSGVRRGEHVFKALAS 297
Query: 299 GASGIFIGRPVVYSLAAEGEKGVRRVLEMLREEFELAMALSGCRSLKEITR 349
GA + +GRPV+Y LA G +GV VLE L +E ++ M L+G R+++++ R
Sbjct: 298 GADAVAVGRPVLYGLALGGAQGVASVLEHLNKELKIVMQLAGTRTIEDVKR 348
|
LOX is a member of the family of FMN-containing alpha-hydroxyacid oxidases and catalyzes the oxidation of l-lactate using molecular oxygen to generate pyruvate and H2O2. This family occurs in both prokaryotes and eukaryotes. Members of this family include flavocytochrome b2 (FCB2), glycolate oxidase (GOX), lactate monooxygenase (LMO), mandelate dehydrogenase (MDH), and long chain hydroxyacid oxidase (LCHAO). Length = 351 |
| >gnl|CDD|240087 cd04736, MDH_FMN, Mandelate dehydrogenase (MDH)-like FMN-binding domain | Back alignment and domain information |
|---|
Score = 298 bits (765), Expect = 2e-99
Identities = 152/363 (41%), Positives = 216/363 (59%), Gaps = 25/363 (6%)
Query: 9 EYEAIAKEKLPKMVFDYYASGAEDQWTLQENRNAFSRILFRPRILIDVSKIDMNTTVLGF 68
+Y ++AK++LP+MVFDY GAED+ L+ NR+AF R F PR L+DVSK D++ ++ G
Sbjct: 2 DYRSLAKKRLPRMVFDYLEGGAEDEKGLRHNRDAFDRWRFIPRRLVDVSKRDISASLFGK 61
Query: 69 KISMPIMIAPTAMQKMAHPEGEYATARAASAAGTIMTLSSWSTSSVEEVASTGPGIRFFQ 128
S P++IAPT + P G+ A ARAA+ AG LS+ S S+E+VA G +FQ
Sbjct: 62 VWSAPLVIAPTGLNGAFWPNGDLALARAAAKAGIPFVLSTASNMSIEDVARQADGDLWFQ 121
Query: 129 LYVYKDRNVVAQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFTLP------------ 176
LYV R + LV+RA AG+ + LT D G RE D++N F +P
Sbjct: 122 LYVVH-RELAELLVKRALAAGYTTLVLTTDVAVNGYRERDLRNGFAIPFRYTPRVLLDGI 180
Query: 177 --PFLTLKNFQGLDLGK----MDEANDSGL-AAYVAGQIDRSLSW---KWLQTITKLPIL 226
P L+ + D+A D + AA ++ Q+D S +W +WL+ + +L
Sbjct: 181 LHPRWLLRFLRNGMPQLANFASDDAIDVEVQAALMSRQMDASFNWQDLRWLRDLWPHKLL 240
Query: 227 VKGVLTAEDARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGV 286
VKG++TAEDA+ ++ GA G+I+SNHG RQLD A I AL E+V AT PV +D G+
Sbjct: 241 VKGIVTAEDAKRCIELGADGVILSNHGGRQLDDAIAPIEALAEIVAATY--KPVLIDSGI 298
Query: 287 RRGTDVFKALALGASGIFIGRPVVYSLAAEGEKGVRRVLEMLREEFELAMALSGCRSLKE 346
RRG+D+ KALALGA+ + +GR +Y LAA GE GV VL +L+EE + +AL GC +
Sbjct: 299 RRGSDIVKALALGANAVLLGRATLYGLAARGEAGVSEVLRLLKEEIDRTLALIGCPDIAS 358
Query: 347 ITR 349
+T
Sbjct: 359 LTP 361
|
MDH is part of a widespread family of homologous FMN-dependent a-hydroxy acid oxidizing enzymes that oxidizes (S)-mandelate to phenylglyoxalate. MDH is an enzyme in the mandelate pathway that occurs in several strains of Pseudomonas which converts (R)-mandelate to benzoate. This family occurs in both prokaryotes and eukaryotes. Members of this family include flavocytochrome b2 (FCB2), glycolate oxidase (GOX), lactate monooxygenase (LMO), mandelate dehydrogenase (MDH), and long chain hydroxyacid oxidase (LCHAO). Length = 361 |
| >gnl|CDD|183033 PRK11197, lldD, L-lactate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Score = 268 bits (688), Expect = 2e-87
Identities = 139/374 (37%), Positives = 204/374 (54%), Gaps = 24/374 (6%)
Query: 4 ITNVMEYEAIAKEKLPKMVFDYYASGAEDQWTLQENRNAFSRILFRPRILIDVSKIDMNT 63
I+ +Y A A+ +LP +F Y GA ++TL+ N + I R R+L D+S + + T
Sbjct: 3 ISAASDYRAAAQRRLPPFLFHYIDGGAYAEYTLRRNVEDLADIALRQRVLKDMSDLSLET 62
Query: 64 TVLGFKISMPIMIAPTAMQKMAHPEGEYATARAASAAGTIMTLSSWSTSSVEEVASTGPG 123
T+ G K+SMP+ +AP + M GE ARAA A G TLS+ S +EEVA
Sbjct: 63 TLFGEKLSMPVALAPVGLTGMYARRGEVQAARAADAKGIPFTLSTVSVCPIEEVAPAIKR 122
Query: 124 IRFFQLYVYKDRNVVAQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLTLKN 183
+FQLYV +DR + + RA+ AG + TVD P G R D + + P +
Sbjct: 123 PMWFQLYVLRDRGFMRNALERAKAAGCSTLVFTVDMPVPGARYRDAHSGMSGPNAAMRRY 182
Query: 184 FQGL-------DLGKMDEAND-----------SGLAAYVA---GQIDRSLSWK---WLQT 219
Q + D+G +D +GL Y+ D S+SWK W++
Sbjct: 183 LQAVTHPQWAWDVGLNGRPHDLGNISAYLGKPTGLEDYIGWLGNNFDPSISWKDLEWIRD 242
Query: 220 ITKLPILVKGVLTAEDARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIP 279
P+++KG+L EDAR AV+ GA GI+VSNHG RQLD V ++ AL + A +G I
Sbjct: 243 FWDGPMVIKGILDPEDARDAVRFGADGIVVSNHGGRQLDGVLSSARALPAIADAVKGDIT 302
Query: 280 VFLDGGVRRGTDVFKALALGASGIFIGRPVVYSLAAEGEKGVRRVLEMLREEFELAMALS 339
+ D G+R G DV + +ALGA + +GR VY+LAA G+ GV +L+++ +E +AM L+
Sbjct: 303 ILADSGIRNGLDVVRMIALGADTVLLGRAFVYALAAAGQAGVANLLDLIEKEMRVAMTLT 362
Query: 340 GCRSLKEITRDHIV 353
G +S+ EITRD +V
Sbjct: 363 GAKSISEITRDSLV 376
|
Length = 381 |
| >gnl|CDD|131755 TIGR02708, L_lactate_ox, L-lactate oxidase | Back alignment and domain information |
|---|
Score = 257 bits (659), Expect = 2e-83
Identities = 135/354 (38%), Positives = 196/354 (55%), Gaps = 21/354 (5%)
Query: 3 EITNVMEYEAIAKEKLPKMVFDYYASGAEDQWTLQENRNAFSRILFRPRILIDVSKIDMN 62
+ N + E +A++ +PK F Y ASGA D +TL+EN AF+ L P +L DV
Sbjct: 12 DFINTYDLEEMAQQVIPKGAFGYIASGAGDTFTLRENIRAFNHKLIVPHLLQDVENPSTE 71
Query: 63 TTVLGFKISMPIMIAPTAMQKMAHPEGEYATARAASAAGTIMTLSSWSTSSVEEV-ASTG 121
LG K+ P ++AP A K+A+ +GE ATAR S G+I T SS+ST+ + E+ +
Sbjct: 72 IEFLGHKLKSPFIMAPVAAHKLANEQGEVATARGVSEFGSIYTTSSYSTADLPEISEALN 131
Query: 122 PGIRFFQLYVYKDRNVVAQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFTLP---PF 178
+FQ Y+ KD + ++ R + G KAI LT D G RE D++N F P P
Sbjct: 132 GTPHWFQFYMSKDDGINRDIMDRVKADGAKAIVLTADATVGGNREVDVRNGFVFPVGMPI 191
Query: 179 LT--LKNFQGLDLGKMDEANDSGLAAYVAGQIDRSLSWKWLQTI---TKLPILVKGVLTA 233
+ L G + V + LS + ++ I + LP+ VKG
Sbjct: 192 VQEYLPTGAGKSMD------------NVYKSAKQKLSPRDIEEIAGYSGLPVYVKGPQCP 239
Query: 234 EDARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVF 293
EDA A++AGA+GI V+NHG RQLD PA +L+EV +A R+P+ D GVRRG VF
Sbjct: 240 EDADRALKAGASGIWVTNHGGRQLDGGPAAFDSLQEVAEAVDKRVPIVFDSGVRRGQHVF 299
Query: 294 KALALGASGIFIGRPVVYSLAAEGEKGVRRVLEMLREEFELAMALSGCRSLKEI 347
KALA GA + +GRPV+Y LA G +G R+V E L +E + M L+G ++++++
Sbjct: 300 KALASGADLVALGRPVIYGLALGGSQGARQVFEYLNKELKRVMQLTGTQTIEDV 353
|
Members of this protein oxidize L-lactate to pyruvate, reducing molecular oxygen to hydrogen peroxide. The enzyme is known in Aerococcus viridans, Streptococcus iniae, and some strains of Streptococcus pyogenes where it appears to contribute to virulence [Energy metabolism, Other]. Length = 367 |
| >gnl|CDD|188481 TIGR03966, actino_HemFlav, heme/flavin dehydrogenase, mycofactocin system | Back alignment and domain information |
|---|
Score = 242 bits (619), Expect = 4e-77
Identities = 134/374 (35%), Positives = 203/374 (54%), Gaps = 30/374 (8%)
Query: 7 VMEYEAIAKEKLPKMVFDYYASGAEDQWTLQENRNAFSRILFRPRILIDVSKIDMNTTVL 66
V E + A+++LP+ V+ +G E TL +N AF + FRP + K +++TTV+
Sbjct: 8 VAEAQRRARKRLPRSVYAALIAGTEKGVTLADNVAAFDELGFRPHVAGAPPKRELSTTVM 67
Query: 67 GFKISMPIMIAPTAMQKMAHPEGEYATARAASAAGTIMTLSSWSTSSVEEVASTGPGIRF 126
G +IS P++I+PT +Q + HP+GE A ARAA+A GT M LSS+++ VEEV + P F
Sbjct: 68 GQEISFPVLISPTGVQAV-HPDGEVAVARAAAARGTAMGLSSFASKPVEEVVAANPKT-F 125
Query: 127 FQLYVYKDRNVVAQLVRRAERAGFKAIALTVD----------TPRLGRREADIKNRFTLP 176
FQ+Y R+ + + RA AG K + LT+D +P + + D++
Sbjct: 126 FQIYWVGSRDDILARLERARAAGAKGLILTLDWSFASRRDWGSPEIPEK-IDLRTMLRFA 184
Query: 177 PFLTLK--------------NFQGLDLGKMDEANDSGLAAYVAGQIDRSLSWK---WLQT 219
P + ++ + +L E + AY +W+ WL+
Sbjct: 185 PEVLVRPGWLLRYLRSGRIPDLTVPNLALRGETPPTFFGAYGEWMGTPPPTWEDVAWLRE 244
Query: 220 ITKLPILVKGVLTAEDARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIP 279
P ++KG+ +DAR AV AGA I VSNHG LD PA I AL + +A ++
Sbjct: 245 QWGGPFMLKGITRPDDARRAVDAGATAISVSNHGGNNLDGTPAAIRALPAIAEAVGDQVE 304
Query: 280 VFLDGGVRRGTDVFKALALGASGIFIGRPVVYSLAAEGEKGVRRVLEMLREEFELAMALS 339
V LDGG+RRG+DV KALALGA + IGR ++ LAA GE GV VL++LR+ + A+
Sbjct: 305 VLLDGGIRRGSDVVKALALGARAVMIGRAYLWGLAANGEAGVENVLDILRQGIDSALLGL 364
Query: 340 GCRSLKEITRDHIV 353
G S+ E++R+ +V
Sbjct: 365 GKASVHELSREDLV 378
|
Members of this protein family possess an N-terminal heme-binding domain and C-terminal flavodehydrogenase domain, and share homology to yeast flavocytochrome b2, to E. coli L-lactate dehydrogenase [cytochrome], to (S)-mandelate dehydrogenase, etc. This enzyme appears only in the context of the mycofactocin system. Interestingly, it is absent from the four species detected so far with mycofactocin but without an F420 biosynthesis system. Length = 385 |
| >gnl|CDD|233750 TIGR02151, IPP_isom_2, isopentenyl-diphosphate delta-isomerase, type 2 | Back alignment and domain information |
|---|
Score = 98.9 bits (247), Expect = 2e-23
Identities = 89/365 (24%), Positives = 141/365 (38%), Gaps = 85/365 (23%)
Query: 30 AEDQWTLQENRNAFSRILFRPRIL--IDVSKIDMNTTVLGFKISMPIMIAPTAMQKMAHP 87
Q F I L I++ ID+ T LG ++ P I AM
Sbjct: 10 CLKQNVEYGGSTGFDDITLIHNALPEINLDDIDLTTEFLGKRLKAPFYI--NAMTG-GSE 66
Query: 88 EG---EYATARAASAAGTIMTLSS-----------WSTSSVEEVASTGP---GIRFFQLY 130
E ARAA G M + S + V E A GP I QL
Sbjct: 67 EAGKINRNLARAARELGIPMGVGSQRAALKDPETADTFEVVREEAPNGPLIANIGAPQL- 125
Query: 131 VYKDRNVVAQLVRRAERAGFKAIALTVDTPR-LGRREADIKNRFTLPPFLTLKNFQGLDL 189
V + + E A+A+ ++ + L + E D +NF+G L
Sbjct: 126 VEGGPEEAQEAIDMIEA---DALAIHLNVLQELVQPEGD-------------RNFKGW-L 168
Query: 190 GKMDEANDSGLAAYVAGQIDRSLSWKWLQTITKLPILVKGV---LTAEDARIAVQAGAAG 246
K+ E + Q+ +P++VK V ++ E A++ AG +
Sbjct: 169 EKIAE---------ICSQLS-------------VPVIVKEVGFGISKEVAKLLADAGVSA 206
Query: 247 IIVSNHG---------ARQLDYVPA---------TIMALEEVVKATQGRIPVFLDGGVRR 288
I V+ G R A T +L EV ++ P+ GG+R
Sbjct: 207 IDVAGAGGTSWAQVENYRAKGSNLASFFNDWGIPTAASLLEV-RSDAPDAPIIASGGLRT 265
Query: 289 GTDVFKALALGASGIFIGRPVVYSLAAEGEKGVRRVLEMLREEFELAMALSGCRSLKEIT 348
G DV KA+ALGA + + RP + + EGE+ V +E++ EE ++AM L+G +++ E+
Sbjct: 266 GLDVAKAIALGADAVGMARPFLKAALDEGEEAVIEEIELIIEELKVAMFLTGAKTIAELK 325
Query: 349 RDHIV 353
+ +V
Sbjct: 326 KVPLV 330
|
Isopentenyl-diphosphate delta-isomerase (IPP isomerase) interconverts isopentenyl diphosphate and dimethylallyl diphosphate. This model represents the type 2 enzyme. FMN, NADPH, and Mg2+ are required by this form, which lacks homology to the type 1 enzyme (TIGR02150). IPP is precursor to many compounds, including enzyme cofactors, sterols, and isoprenoids [Biosynthesis of cofactors, prosthetic groups, and carriers, Other]. Length = 333 |
| >gnl|CDD|235465 PRK05437, PRK05437, isopentenyl pyrophosphate isomerase; Provisional | Back alignment and domain information |
|---|
Score = 79.4 bits (197), Expect = 2e-16
Identities = 45/161 (27%), Positives = 75/161 (46%), Gaps = 28/161 (17%)
Query: 216 WLQTITKL------PILVKGV---LTAEDARIAVQAGAAGIIVSNHG---------ARQL 257
WL I ++ P++VK V ++ E A+ AG I V+ G R
Sbjct: 174 WLDNIAEIVSALPVPVIVKEVGFGISKETAKRLADAGVKAIDVAGAGGTSWAAIENYRAR 233
Query: 258 DYVPA---------TIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFIGRP 308
D A T +L E ++ +P+ GG+R G D+ KALALGA + + P
Sbjct: 234 DDRLASYFADWGIPTAQSLLEA-RSLLPDLPIIASGGIRNGLDIAKALALGADAVGMAGP 292
Query: 309 VVYSLAAEGEKGVRRVLEMLREEFELAMALSGCRSLKEITR 349
+ + GE+ V ++E EE ++AM L+G +++ E+ +
Sbjct: 293 FLKAALEGGEEAVIELIEQWIEELKIAMFLTGAKNIAELRK 333
|
Length = 352 |
| >gnl|CDD|239205 cd02811, IDI-2_FMN, Isopentenyl-diphosphate:dimethylallyl diphosphate isomerase type 2 (IDI-2) FMN-binding domain | Back alignment and domain information |
|---|
Score = 72.1 bits (178), Expect = 4e-14
Identities = 45/151 (29%), Positives = 70/151 (46%), Gaps = 25/151 (16%)
Query: 222 KLPILVKGV---LTAEDARIAVQAGAAGIIVSNHG---------ARQLDYVPA------- 262
+P++VK V ++ E A+ AG I V+ G R D
Sbjct: 178 SVPVIVKEVGFGISRETAKRLADAGVKAIDVAGAGGTSWARVENYRAKDSDQRLAEYFAD 237
Query: 263 ----TIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFIGRPVVYSLAAEGE 318
T +L EV ++ +P+ GG+R G D+ KALALGA + + P + A EGE
Sbjct: 238 WGIPTAASLLEV-RSALPDLPLIASGGIRNGLDIAKALALGADLVGMAGPFL-KAALEGE 295
Query: 319 KGVRRVLEMLREEFELAMALSGCRSLKEITR 349
+ V +E + EE AM L+G ++L E+ +
Sbjct: 296 EAVIETIEQIIEELRTAMFLTGAKNLAELKQ 326
|
Two types of IDIs have been characterized at present. The long known IDI-1 is only dependent on divalent metals for activity, whereas IDI-2 requires a metal, FMN and NADPH. IDI-2 catalyzes the interconversion of isopentenyl diphosphate (IPP) and dimethylallyl diphosphate (DMAPP) in the mevalonate pathway. Length = 326 |
| >gnl|CDD|239202 cd02808, GltS_FMN, Glutamate synthase (GltS) FMN-binding domain | Back alignment and domain information |
|---|
Score = 58.3 bits (142), Expect = 2e-09
Identities = 51/180 (28%), Positives = 66/180 (36%), Gaps = 53/180 (29%)
Query: 224 PILVK---GVLTAEDARIAVQAGAAGIIVSNH----GARQL---DYV--PATIMALEEVV 271
PI VK G + A AGA I + GA L D+V P T + L
Sbjct: 216 PIGVKLVAGHGEGDIAAGVAAAGADFITIDGAEGGTGAAPLTFIDHVGLP-TELGLARAH 274
Query: 272 KATQG-----RIPVFLDGGVRRGTDVFKALALGASGIFIGRPVVYSLAAEG--------- 317
+A R+ + GG+R G DV KALALGA + IG +L A G
Sbjct: 275 QALVKNGLRDRVSLIASGGLRTGADVAKALALGADAVGIGTA---ALIALGCIQARKCHT 331
Query: 318 --------------------EKGVRRV---LEMLREEFELAMALSGCRSLKEITRDHIVT 354
E RV L+ L EE A G RSL+ + R ++
Sbjct: 332 NTCPVGVATQDPELRRRLDVEGKAERVANYLKSLAEELRELAAALGKRSLELLGRSDLLA 391
|
GltS is a complex iron-sulfur flavoprotein that catalyzes the reductive synthesis of L-glutamate from 2-oxoglutarate and L-glutamine via intramolecular channelling of ammonia, a reaction in the plant, yeast and bacterial pathway for ammonia assimilation. It is a multifunctional enzyme that functions through three distinct active centers, carrying out L-glutamine hydrolysis, conversion of 2-oxoglutarate into L-glutamate, and electron uptake from an electron donor. Length = 392 |
| >gnl|CDD|240073 cd04722, TIM_phosphate_binding, TIM barrel proteins share a structurally conserved phosphate binding motif and in general share an eight beta/alpha closed barrel structure | Back alignment and domain information |
|---|
Score = 52.6 bits (126), Expect = 4e-08
Identities = 27/88 (30%), Positives = 42/88 (47%), Gaps = 5/88 (5%)
Query: 223 LPILVKGVLTAEDARI-AVQAGAAGIIVSNHGARQL--DYVPATIMALEEVVKATQGRIP 279
+ ++VK T E A A +AG + + N G D VP + L + + ++P
Sbjct: 115 VKVVVKLSPTGELAAAAAEEAGVDEVGLGNGGGGGGGRDAVPIADLLLILAKRGS--KVP 172
Query: 280 VFLDGGVRRGTDVFKALALGASGIFIGR 307
V GG+ D +ALALGA G+ +G
Sbjct: 173 VIAGGGINDPEDAAEALALGADGVIVGS 200
|
Specific for this family is the conserved phosphate binding site at the edges of strands 7 and 8. The phosphate comes either from the substrate, as in the case of inosine monophosphate dehydrogenase (IMPDH), or from ribulose-5-phosphate 3-epimerase (RPE) or from cofactors, like FMN. Length = 200 |
| >gnl|CDD|240081 cd04730, NPD_like, 2-Nitropropane dioxygenase (NPD), one of the nitroalkane oxidizing enzyme families, catalyzes oxidative denitrification of nitroalkanes to their corresponding carbonyl compounds and nitrites | Back alignment and domain information |
|---|
Score = 51.7 bits (125), Expect = 1e-07
Identities = 28/83 (33%), Positives = 36/83 (43%), Gaps = 12/83 (14%)
Query: 230 VLTAEDARIAVQAGAAGIIVSN-----HGARQLDYVPATIMAL-EEVVKATQGRIPVFLD 283
V + E+AR A AGA ++ H AL EV A IPV
Sbjct: 109 VTSVEEARKAEAAGADALVAQGAEAGGHRGTFD----IGTFALVPEVRDAV--DIPVIAA 162
Query: 284 GGVRRGTDVFKALALGASGIFIG 306
GG+ G + ALALGA G+ +G
Sbjct: 163 GGIADGRGIAAALALGADGVQMG 185
|
NDP is a member of the NAD(P)H-dependent flavin oxidoreductase family that reduce a range of alternative electron acceptors. Most use FAD/FMN as a cofactor and NAD(P)H as electron donor. Some contain 4Fe-4S cluster to transfer electron from FAD to FMN. Length = 236 |
| >gnl|CDD|238223 cd00381, IMPDH, IMPDH: The catalytic domain of the inosine monophosphate dehydrogenase | Back alignment and domain information |
|---|
Score = 48.3 bits (116), Expect = 2e-06
Identities = 34/109 (31%), Positives = 51/109 (46%), Gaps = 22/109 (20%)
Query: 215 KWL-QTITKLPILVKGVLTAEDARIAVQAGAAGIIV-----SNHGAR--------QLDYV 260
K++ + + ++ V+TAE AR + AGA G+ V S R Q
Sbjct: 127 KFIKKKYPNVDVIAGNVVTAEAARDLIDAGADGVKVGIGPGSICTTRIVTGVGVPQ---- 182
Query: 261 PATIMALEEVVKATQGR-IPVFLDGGVRRGTDVFKALALGASGIFIGRP 308
AT A+ +V A + +PV DGG+R D+ KALA GA + +G
Sbjct: 183 -AT--AVADVAAAARDYGVPVIADGGIRTSGDIVKALAAGADAVMLGSL 228
|
IMPDH catalyzes the NAD-dependent oxidation of inosine 5'-monophosphate (IMP) to xanthosine 5' monophosphate (XMP). It is a rate-limiting step in the de novo synthesis of the guanine nucleotides. There is often a CBS domain inserted in the middle of this domain, which is proposed to play a regulatory role. IMPDH is a key enzyme in the regulation of cell proliferation and differentiation. It has been identified as an attractive target for developing chemotherapeutic agents. Length = 325 |
| >gnl|CDD|233350 TIGR01302, IMP_dehydrog, inosine-5'-monophosphate dehydrogenase | Back alignment and domain information |
|---|
Score = 48.1 bits (115), Expect = 3e-06
Identities = 38/116 (32%), Positives = 52/116 (44%), Gaps = 25/116 (21%)
Query: 206 GQIDRSLSWKWL-QTITKLPILVKGVLTAEDARIAVQAGAAGI-------------IVSN 251
ID S K + +T L I+ V TAE A+ + AGA G+ IV+
Sbjct: 251 YVID---SIKEIKKTYPDLDIIAGNVATAEQAKALIDAGADGLRVGIGPGSICTTRIVAG 307
Query: 252 HGARQLDYVPATIMALEEVVKATQGR-IPVFLDGGVRRGTDVFKALALGASGIFIG 306
G Q I A+ +V + IPV DGG+R D+ KALA GA + +G
Sbjct: 308 VGVPQ-------ITAVYDVAEYAAQSGIPVIADGGIRYSGDIVKALAAGADAVMLG 356
|
This model describes IMP dehydrogenase, an enzyme of GMP biosynthesis. This form contains two CBS domains. This model describes a rather tightly conserved cluster of IMP dehydrogenase sequences, many of which are characterized. The model excludes two related families of proteins proposed also to be IMP dehydrogenases, but without characterized members. These are related families are the subject of separate models [Purines, pyrimidines, nucleosides, and nucleotides, Purine ribonucleotide biosynthesis]. Length = 450 |
| >gnl|CDD|233351 TIGR01304, IMP_DH_rel_2, IMP dehydrogenase family protein | Back alignment and domain information |
|---|
Score = 47.1 bits (112), Expect = 6e-06
Identities = 36/130 (27%), Positives = 56/130 (43%), Gaps = 13/130 (10%)
Query: 201 AAYVAGQIDRSLSWKWLQTITKLPILVKGVLTAEDARIAVQAGAAGIIVSNHGARQLDYV 260
A +V+ + L+ K +P++ GV A ++ GAAG+IV GA V
Sbjct: 168 AEHVSTSGE-PLNLKEFIGELDVPVIAGGVNDYTTALHLMRTGAAGVIVGPGGANTTRLV 226
Query: 261 -------PATIM----ALEEVVKATQGR-IPVFLDGGVRRGTDVFKALALGASGIFIGRP 308
I A + + T GR + V DGG+ D+ KA+A GA + +G P
Sbjct: 227 LGIEVPMATAIADVAAARRDYLDETGGRYVHVIADGGIETSGDLVKAIACGADAVVLGSP 286
Query: 309 VVYSLAAEGE 318
+ + A G
Sbjct: 287 LARAAEAPGR 296
|
This model represents a family of proteins, often annotated as a putative IMP dehydrogenase, related to IMP dehydrogenase and GMP reductase. Most species with a member of this family belong to the high GC Gram-positive bacteria, and these also have the IMP dehydrogenase described by TIGRFAMs equivalog model TIGR01302 [Unknown function, General]. Length = 369 |
| >gnl|CDD|236322 PRK08649, PRK08649, inosine 5-monophosphate dehydrogenase; Validated | Back alignment and domain information |
|---|
Score = 44.8 bits (107), Expect = 4e-05
Identities = 33/109 (30%), Positives = 54/109 (49%), Gaps = 16/109 (14%)
Query: 224 PILVKGVLTAEDARIAVQAGAAGIIV--------SNHGARQLDYVP-ATIM-----ALEE 269
P++V G +T A ++ GAAG++V ++ G + VP AT + A +
Sbjct: 189 PVIVGGCVTYTTALHLMRTGAAGVLVGIGPGAACTSRGVLGIG-VPMATAIADVAAARRD 247
Query: 270 VVKATQGR-IPVFLDGGVRRGTDVFKALALGASGIFIGRPVVYSLAAEG 317
+ T GR + V DGG+ D+ KA+A GA + +G P+ + A G
Sbjct: 248 YLDETGGRYVHVIADGGIGTSGDIAKAIACGADAVMLGSPLARAAEAPG 296
|
Length = 368 |
| >gnl|CDD|223245 COG0167, PyrD, Dihydroorotate dehydrogenase [Nucleotide transport and metabolism] | Back alignment and domain information |
|---|
Score = 44.5 bits (106), Expect = 5e-05
Identities = 35/160 (21%), Positives = 63/160 (39%), Gaps = 37/160 (23%)
Query: 215 KWLQTITKLPILVKGVLTAED------ARIAVQAGAAGIIVSNHGARQLDYVPATIM--- 265
+ ++ TK+P+ VK L A+ A +AGA G+I N + T
Sbjct: 154 EAVKAATKVPVFVK--LAPNITDIDEIAKAAEEAGADGLIAINTTKSGMKIDLETKKPVL 211
Query: 266 ------------------ALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFIGR 307
+ E+ K G IP+ GG+ G D + + GAS + +G
Sbjct: 212 ANETGGLSGPPLKPIALRVVAELYKRLGGDIPIIGVGGIETGEDALEFILAGASAVQVGT 271
Query: 308 PVVYSLAAEGEKGVRRVLEMLREEFELAMALSGCRSLKEI 347
++Y +G V+ +++ L + G S+++I
Sbjct: 272 ALIY----KGPGIVKEIIKGLAR----WLEEKGFESIQDI 303
|
Length = 310 |
| >gnl|CDD|235507 PRK05567, PRK05567, inosine 5'-monophosphate dehydrogenase; Reviewed | Back alignment and domain information |
|---|
Score = 44.4 bits (106), Expect = 7e-05
Identities = 33/98 (33%), Positives = 47/98 (47%), Gaps = 21/98 (21%)
Query: 223 LPILVKGVLTAEDARIAVQAGAAGI-------------IVSNHGARQLDYVPATIMALEE 269
+ I+ V TAE AR ++AGA + IV+ G Q I A+ +
Sbjct: 270 VQIIAGNVATAEAARALIEAGADAVKVGIGPGSICTTRIVAGVGVPQ-------ITAIAD 322
Query: 270 VVKATQGR-IPVFLDGGVRRGTDVFKALALGASGIFIG 306
+A + IPV DGG+R D+ KALA GAS + +G
Sbjct: 323 AAEAAKKYGIPVIADGGIRYSGDIAKALAAGASAVMLG 360
|
Length = 486 |
| >gnl|CDD|224981 COG2070, COG2070, Dioxygenases related to 2-nitropropane dioxygenase [General function prediction only] | Back alignment and domain information |
|---|
Score = 43.9 bits (104), Expect = 7e-05
Identities = 31/82 (37%), Positives = 41/82 (50%), Gaps = 5/82 (6%)
Query: 229 GVLTAEDARIAVQAGAAGIIVSNHGA---RQLDYVPATIMAL-EEVVKATQGRIPVFLDG 284
V+T +A A +AGA +I A R + + AL EVV A G IPV G
Sbjct: 133 SVITVREALKAERAGADAVIAQGAEAGGHRGGVDLEVSTFALVPEVVDAVDG-IPVIAAG 191
Query: 285 GVRRGTDVFKALALGASGIFIG 306
G+ G + ALALGA G+ +G
Sbjct: 192 GIADGRGIAAALALGADGVQMG 213
|
Length = 336 |
| >gnl|CDD|178421 PLN02826, PLN02826, dihydroorotate dehydrogenase | Back alignment and domain information |
|---|
Score = 43.6 bits (103), Expect = 1e-04
Identities = 43/156 (27%), Positives = 68/156 (43%), Gaps = 35/156 (22%)
Query: 222 KLPILVKGV--LTAED----ARIAVQAGAAGIIVSNHGARQLDYVPATIMA--------- 266
P+LVK L+ ED A +A+ G G+I+SN + D V A
Sbjct: 262 PPPLLVKIAPDLSKEDLEDIAAVALALGIDGLIISNTTISRPDSVLGHPHADEAGGLSGK 321
Query: 267 ---------LEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFIGRPVVYS-LAAE 316
L E+ + T+G+IP+ GGV G D +K + GAS + +Y+ A E
Sbjct: 322 PLFDLSTEVLREMYRLTRGKIPLVGCGGVSSGEDAYKKIRAGASLV-----QLYTAFAYE 376
Query: 317 GEKGVRRVLEMLREEFELAMALSGCRSLKE-ITRDH 351
G + R ++ E + G +S++E + DH
Sbjct: 377 GPALIPR----IKAELAACLERDGFKSIQEAVGADH 408
|
Length = 409 |
| >gnl|CDD|223147 COG0069, GltB, Glutamate synthase domain 2 [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Score = 43.8 bits (104), Expect = 1e-04
Identities = 48/190 (25%), Positives = 65/190 (34%), Gaps = 60/190 (31%)
Query: 217 LQTITKL-PILVK-----GVLTAEDARIAVQAGAAGIIVSNH----GARQL---DYV--P 261
L+ I VK GV T A +AGA I + GA L D+ P
Sbjct: 297 LKEANPWAKISVKLVAEHGVGTI--AAGVAKAGADVITIDGADGGTGASPLTSIDHAGIP 354
Query: 262 ATIMALEEVVKATQG-----RIPVFLDGGVRRGTDVFKALALGASGIFIGRPVVYSLAAE 316
+ L E + ++ + DGG+R G DV KA ALGA + G +L A
Sbjct: 355 -WELGLAETHQTLVLNGLRDKVKLIADGGLRTGADVAKAAALGADAVGFGTA---ALVAL 410
Query: 317 G-----------------------------EKGVRRVLE----MLREEFELAMALSGCRS 343
G E RV+ + E EL +A G RS
Sbjct: 411 GCIMCRVCHTGTCPVGIATQDPELRKRLDVEGKPERVINYFTFVAEELREL-LAALGKRS 469
Query: 344 LKEITRDHIV 353
L E+ +
Sbjct: 470 LSELIGRTDL 479
|
Length = 485 |
| >gnl|CDD|110632 pfam01645, Glu_synthase, Conserved region in glutamate synthase | Back alignment and domain information |
|---|
Score = 43.1 bits (102), Expect = 2e-04
Identities = 33/108 (30%), Positives = 48/108 (44%), Gaps = 20/108 (18%)
Query: 224 PILVKGVLTAEDARIAVQAGAAG-----IIVSNH----GARQL---DYVPA-TIMALEEV 270
PI VK L + + AG A I++ H GA + +AL EV
Sbjct: 204 PISVK--LVSGHGVGTIAAGVAKAGADIILIDGHDGGTGASPKTSIKHAGLPWELALAEV 261
Query: 271 VKAT-----QGRIPVFLDGGVRRGTDVFKALALGASGIFIGRPVVYSL 313
+ + R+ + DGG+R G DV KA ALGA ++IG + +L
Sbjct: 262 HQTLVENGLRDRVSLIADGGLRTGADVAKAAALGADAVYIGTAALIAL 309
|
This family represents a region of the glutamate synthase protein. This region is expressed as a separate subunit in the glutamate synthase alpha subunit from archaebacteria, or part of a large multidomain enzyme in other organisms. The aligned region of these proteins contains a putative FMN binding site and Fe-S cluster. Length = 367 |
| >gnl|CDD|240355 PTZ00314, PTZ00314, inosine-5'-monophosphate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Score = 43.0 bits (102), Expect = 2e-04
Identities = 30/108 (27%), Positives = 48/108 (44%), Gaps = 22/108 (20%)
Query: 215 KWLQTIT-KLPILVKGVLTAEDARIAVQAGAAGI-------------IVSNHGARQLDYV 260
K L++ + I+ V+TA+ A+ + AGA G+ V G Q
Sbjct: 274 KKLKSNYPHVDIIAGNVVTADQAKNLIDAGADGLRIGMGSGSICITQEVCAVGRPQAS-- 331
Query: 261 PATIMALEEVVK-ATQGRIPVFLDGGVRRGTDVFKALALGASGIFIGR 307
A+ V + A + +P DGG++ D+ KALALGA + +G
Sbjct: 332 -----AVYHVARYARERGVPCIADGGIKNSGDICKALALGADCVMLGS 374
|
Length = 495 |
| >gnl|CDD|217344 pfam03060, NMO, Nitronate monooxygenase | Back alignment and domain information |
|---|
Score = 41.6 bits (98), Expect = 4e-04
Identities = 28/84 (33%), Positives = 39/84 (46%), Gaps = 3/84 (3%)
Query: 225 ILVKGVLTAEDARIAVQAGAAGIIV--SNHGARQLDYVPATIMALEEVVKATQGRIPVFL 282
++ V +A++AR A AGA ++ G +V T L V IPV
Sbjct: 139 KVIPTVSSAKEARKAEAAGADAVVAQGPEAGGHIGTFVGVTTFLLVPTVVDAVD-IPVIA 197
Query: 283 DGGVRRGTDVFKALALGASGIFIG 306
GG+ G + ALALGA G+ IG
Sbjct: 198 AGGIADGRGIAAALALGAEGVQIG 221
|
Nitronate monooxygenase (NMO), formerly referred to as 2-nitropropane dioxygenase (NPD) (EC:1.13.11.32), is an FMN-dependent enzyme that uses molecular oxygen to oxidize (anionic) alkyl nitronates and, in the case of the enzyme from Neurospora crassa, (neutral) nitroalkanes to the corresponding carbonyl compounds and nitrite. Previously classified as 2-nitropropane dioxygenase, but it is now recognized that this was the result of the slow ionization of nitroalkanes to their nitronate (anionic) forms. The enzymes from the fungus Neurospora crassa and the yeast Williopsis saturnus var. mrakii (formerly classified as Hansenula mrakii) contain non-covalently bound FMN as the cofactor. Active towards linear alkyl nitronates of lengths between 2 and 6 carbon atoms and, with lower activity, towards propyl-2-nitronate. The enzyme from N. crassa can also utilize neutral nitroalkanes, but with lower activity. One atom of oxygen is incorporated into the carbonyl group of the aldehyde product. The reaction appears to involve the formation of an enzyme-bound nitronate radical and an a-peroxynitroethane species, which then decomposes, either in the active site of the enzyme or after release, to acetaldehyde and nitrite. Length = 329 |
| >gnl|CDD|223120 COG0042, COG0042, tRNA-dihydrouridine synthase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Score = 41.5 bits (98), Expect = 5e-04
Identities = 44/150 (29%), Positives = 65/150 (43%), Gaps = 25/150 (16%)
Query: 222 KLPILVK---GV-----LTAEDARIAVQAGAAGIIVSNHG-ARQLDY-VPATIMALEEVV 271
+P+ VK G L E ARI AGA + V HG R Y PA ++E+
Sbjct: 136 DIPVTVKIRLGWDDDDILALEIARILEDAGADALTV--HGRTRAQGYLGPADWDYIKELK 193
Query: 272 KATQGRIPVFLDGGVRRGTDVFKALAL-GASGIFIGRP----------VVYSLAAEGEK- 319
+A IPV +G ++ D + L GA G+ IGR + Y E
Sbjct: 194 EAVPS-IPVIANGDIKSLEDAKEMLEYTGADGVMIGRGALGNPWLFRQIDYLETGELLPP 252
Query: 320 GVRRVLEMLREEFELAMALSGCRSLKEITR 349
+ VL++LRE EL + G + L+ + +
Sbjct: 253 TLAEVLDILREHLELLLEYYGKKGLRRLRK 282
|
Length = 323 |
| >gnl|CDD|215936 pfam00478, IMPDH, IMP dehydrogenase / GMP reductase domain | Back alignment and domain information |
|---|
Score = 41.1 bits (97), Expect = 7e-04
Identities = 35/108 (32%), Positives = 51/108 (47%), Gaps = 22/108 (20%)
Query: 215 KWL-QTITKLPILVKGVLTAEDARIAVQAGAAGI-------------IVSNHGARQLDYV 260
KW+ + +L ++ V+TAE AR + AGA + V+ G QL
Sbjct: 256 KWIKKKYPELDVIAGNVVTAEAARELIDAGADAVKVGIGPGSICTTREVAGVGRPQL--- 312
Query: 261 PATIMALEEVVKATQGR-IPVFLDGGVRRGTDVFKALALGASGIFIGR 307
A+ EV A + +PV DGG+R D+ KALA GAS + +G
Sbjct: 313 ----TAVYEVADAARKLGVPVIADGGIRYSGDIAKALAAGASAVMLGS 356
|
This family is involved in biosynthesis of guanosine nucleotide. Members of this family contain a TIM barrel structure. In the inosine monophosphate dehydrogenases 2 CBS domains pfam00571 are inserted in the TIM barrel. This family is a member of the common phosphate binding site TIM barrel family. Length = 467 |
| >gnl|CDD|235465 PRK05437, PRK05437, isopentenyl pyrophosphate isomerase; Provisional | Back alignment and domain information |
|---|
Score = 39.8 bits (94), Expect = 0.002
Identities = 15/54 (27%), Positives = 24/54 (44%), Gaps = 4/54 (7%)
Query: 30 AEDQWTLQENRNAFSRILFRPRIL--IDVSKIDMNTTVLGFKISMPIMIAPTAM 81
A + + F + L +D+ ID++T LG K+S P +I AM
Sbjct: 17 ALKEDVEYKKTTGFDDVRLIHNALPELDLDDIDLSTEFLGKKLSAPFLI--NAM 68
|
Length = 352 |
| >gnl|CDD|239200 cd02801, DUS_like_FMN, Dihydrouridine synthase-like (DUS-like) FMN-binding domain | Back alignment and domain information |
|---|
Score = 39.0 bits (92), Expect = 0.002
Identities = 23/75 (30%), Positives = 33/75 (44%), Gaps = 7/75 (9%)
Query: 236 ARIAVQAGAAGIIVSNHG--ARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVF 293
A+ AGA+ + V HG Q PA + E+ +A IPV +G + D
Sbjct: 144 AKALEDAGASALTV--HGRTREQRYSGPADWDYIAEIKEAV--SIPVIANGDIFSLEDAL 199
Query: 294 KALAL-GASGIFIGR 307
+ L G G+ IGR
Sbjct: 200 RCLEQTGVDGVMIGR 214
|
Members of this family catalyze the reduction of the 5,6-double bond of a uridine residue on tRNA. Dihydrouridine modification of tRNA is widely observed in prokaryotes and eukaryotes, and also in some archaea. Most dihydrouridines are found in the D loop of t-RNAs. The role of dihydrouridine in tRNA is currently unknown, but may increase conformational flexibility of the tRNA. It is likely that different family members have different substrate specificities, which may overlap. 1VHN, a putative flavin oxidoreductase, has high sequence similarity to DUS. The enzymatic mechanism of 1VHN is not known at the present. Length = 231 |
| >gnl|CDD|239204 cd02810, DHOD_DHPD_FMN, Dihydroorotate dehydrogenase (DHOD) and Dihydropyrimidine dehydrogenase (DHPD) FMN-binding domain | Back alignment and domain information |
|---|
Score = 38.9 bits (91), Expect = 0.003
Identities = 65/306 (21%), Positives = 99/306 (32%), Gaps = 106/306 (34%)
Query: 63 TTVLGFKISMPIMIAPTAMQKMAHPEGEYATARAASAAGTIM----TLSSWSTSSVEEVA 118
LG K+ P +A + K GE AA+ G ++ TL + + VA
Sbjct: 1 VNFLGLKLKNPFGVAAGPLLK----TGELIARAAAAGFGAVVYKTVTLHPRPGNPLPRVA 56
Query: 119 -----------------STG---PGIRFFQLYVYK-----DRNVV------------AQL 141
S G G+ + + K + +L
Sbjct: 57 RLPPEGESYPEQLGILNSFGLPNLGLDVWLQDIAKAKKEFPGQPLIASVGGSSKEDYVEL 116
Query: 142 VRRAERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLTLKNFQGLDLGKMDEANDSGLA 201
R+ ERAG KA+ L + P +G G LG+ EA +A
Sbjct: 117 ARKIERAGAKALELNLSCPNVG---------------------GGRQLGQDPEA----VA 151
Query: 202 AYVAGQIDRSLSWKWLQTITKLPILVK--GVLTAED----ARIAVQAGAAGIIVSNH-GA 254
+ K ++ +P+LVK ED A+ A +AGA G+ N
Sbjct: 152 NLL----------KAVKAAVDIPLLVKLSPYFDLEDIVELAKAAERAGADGLTAINTISG 201
Query: 255 RQLDYV-------------------PATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKA 295
R +D P + + + Q IP+ GG+ G DV +
Sbjct: 202 RVVDLKTVGPGPKRGTGGLSGAPIRPLALRWVARLAARLQLDIPIIGVGGIDSGEDVLEM 261
Query: 296 LALGAS 301
L GAS
Sbjct: 262 LMAGAS 267
|
DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences and cellular location. Members of class 1 are cytosolic enzymes and multimers while class 2 enzymes are membrane associated and monomeric. The class 1 enzymes can be further divided into subtypes 1A and 1B which are homodimers and heterotetrameric proteins, respectively. DHPD catalyzes the first step in pyrimidine degradation: the NADPH-dependent reduction of uracil and thymine to the corresponding 5,6-dihydropyrimidines. DHPD contains two FAD, two FMN and eight [4Fe-4S] clusters, arranged in two electron transfer chains that pass its homodimeric interface twice. Two of the Fe-S clusters show a hitherto unobserved coordination involving a glutamine residue. Length = 289 |
Conserved Domains Detected by HHsearch
Original result of HHsearch against CDD database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 367 | |||
| KOG0538 | 363 | consensus Glycolate oxidase [Energy production and | 100.0 | |
| PLN02493 | 367 | probable peroxisomal (S)-2-hydroxy-acid oxidase | 100.0 | |
| PLN02535 | 364 | glycolate oxidase | 100.0 | |
| PRK11197 | 381 | lldD L-lactate dehydrogenase; Provisional | 100.0 | |
| TIGR02708 | 367 | L_lactate_ox L-lactate oxidase. Members of this pr | 100.0 | |
| cd04736 | 361 | MDH_FMN Mandelate dehydrogenase (MDH)-like FMN-bin | 100.0 | |
| cd03332 | 383 | LMO_FMN L-Lactate 2-monooxygenase (LMO) FMN-bindin | 100.0 | |
| cd04737 | 351 | LOX_like_FMN L-Lactate oxidase (LOX) FMN-binding d | 100.0 | |
| PF01070 | 356 | FMN_dh: FMN-dependent dehydrogenase; InterPro: IPR | 100.0 | |
| cd02922 | 344 | FCB2_FMN Flavocytochrome b2 (FCB2) FMN-binding dom | 100.0 | |
| PLN02979 | 366 | glycolate oxidase | 100.0 | |
| COG1304 | 360 | idi Isopentenyl diphosphate isomerase (BS_ypgA, MT | 100.0 | |
| cd02809 | 299 | alpha_hydroxyacid_oxid_FMN Family of homologous FM | 100.0 | |
| cd02811 | 326 | IDI-2_FMN Isopentenyl-diphosphate:dimethylallyl di | 100.0 | |
| PRK05437 | 352 | isopentenyl pyrophosphate isomerase; Provisional | 100.0 | |
| TIGR02151 | 333 | IPP_isom_2 isopentenyl-diphosphate delta-isomerase | 100.0 | |
| PRK05458 | 326 | guanosine 5'-monophosphate oxidoreductase; Provisi | 99.96 | |
| TIGR01306 | 321 | GMP_reduct_2 guanosine monophosphate reductase, ba | 99.96 | |
| TIGR01305 | 343 | GMP_reduct_1 guanosine monophosphate reductase, eu | 99.94 | |
| cd02808 | 392 | GltS_FMN Glutamate synthase (GltS) FMN-binding dom | 99.93 | |
| TIGR01304 | 369 | IMP_DH_rel_2 IMP dehydrogenase family protein. Thi | 99.93 | |
| PRK08649 | 368 | inosine 5-monophosphate dehydrogenase; Validated | 99.93 | |
| cd00381 | 325 | IMPDH IMPDH: The catalytic domain of the inosine m | 99.91 | |
| TIGR01037 | 300 | pyrD_sub1_fam dihydroorotate dehydrogenase (subfam | 99.91 | |
| cd04739 | 325 | DHOD_like Dihydroorotate dehydrogenase (DHOD) like | 99.91 | |
| PRK07259 | 301 | dihydroorotate dehydrogenase 1B; Reviewed | 99.9 | |
| COG0042 | 323 | tRNA-dihydrouridine synthase [Translation, ribosom | 99.9 | |
| PRK10415 | 321 | tRNA-dihydrouridine synthase B; Provisional | 99.9 | |
| PF00478 | 352 | IMPDH: IMP dehydrogenase / GMP reductase domain; I | 99.9 | |
| PRK06843 | 404 | inosine 5-monophosphate dehydrogenase; Validated | 99.89 | |
| PRK07565 | 334 | dihydroorotate dehydrogenase 2; Reviewed | 99.89 | |
| cd04740 | 296 | DHOD_1B_like Dihydroorotate dehydrogenase (DHOD) c | 99.89 | |
| PRK10550 | 312 | tRNA-dihydrouridine synthase C; Provisional | 99.88 | |
| PLN02495 | 385 | oxidoreductase, acting on the CH-CH group of donor | 99.88 | |
| TIGR00742 | 318 | yjbN tRNA dihydrouridine synthase A. Members of th | 99.88 | |
| TIGR00737 | 319 | nifR3_yhdG putative TIM-barrel protein, nifR3 fami | 99.87 | |
| cd02940 | 299 | DHPD_FMN Dihydropyrimidine dehydrogenase (DHPD) FM | 99.87 | |
| PRK05096 | 346 | guanosine 5'-monophosphate oxidoreductase; Provisi | 99.87 | |
| PLN02826 | 409 | dihydroorotate dehydrogenase | 99.87 | |
| COG0167 | 310 | PyrD Dihydroorotate dehydrogenase [Nucleotide tran | 99.86 | |
| PRK08318 | 420 | dihydropyrimidine dehydrogenase subunit B; Validat | 99.86 | |
| PRK02506 | 310 | dihydroorotate dehydrogenase 1A; Reviewed | 99.85 | |
| PRK05286 | 344 | dihydroorotate dehydrogenase 2; Reviewed | 99.83 | |
| PF01207 | 309 | Dus: Dihydrouridine synthase (Dus); InterPro: IPR0 | 99.83 | |
| PTZ00314 | 495 | inosine-5'-monophosphate dehydrogenase; Provisiona | 99.82 | |
| PRK07107 | 502 | inosine 5-monophosphate dehydrogenase; Validated | 99.82 | |
| PRK11815 | 333 | tRNA-dihydrouridine synthase A; Provisional | 99.82 | |
| PLN02274 | 505 | inosine-5'-monophosphate dehydrogenase | 99.81 | |
| PF01645 | 368 | Glu_synthase: Conserved region in glutamate syntha | 99.8 | |
| cd04741 | 294 | DHOD_1A_like Dihydroorotate dehydrogenase (DHOD) c | 99.79 | |
| PRK05567 | 486 | inosine 5'-monophosphate dehydrogenase; Reviewed | 99.79 | |
| TIGR01302 | 450 | IMP_dehydrog inosine-5'-monophosphate dehydrogenas | 99.79 | |
| cd04738 | 327 | DHOD_2_like Dihydroorotate dehydrogenase (DHOD) cl | 99.79 | |
| TIGR01303 | 475 | IMP_DH_rel_1 IMP dehydrogenase family protein. Thi | 99.78 | |
| cd02810 | 289 | DHOD_DHPD_FMN Dihydroorotate dehydrogenase (DHOD) | 99.77 | |
| cd02911 | 233 | arch_FMN Archeal FMN-binding domain. This family o | 99.75 | |
| cd02801 | 231 | DUS_like_FMN Dihydrouridine synthase-like (DUS-lik | 99.74 | |
| COG0069 | 485 | GltB Glutamate synthase domain 2 [Amino acid trans | 99.73 | |
| KOG1436 | 398 | consensus Dihydroorotate dehydrogenase [Nucleotide | 99.73 | |
| PF01180 | 295 | DHO_dh: Dihydroorotate dehydrogenase; InterPro: IP | 99.72 | |
| KOG2335 | 358 | consensus tRNA-dihydrouridine synthase [Translatio | 99.72 | |
| TIGR01036 | 335 | pyrD_sub2 dihydroorotate dehydrogenase, subfamily | 99.7 | |
| PRK07807 | 479 | inosine 5-monophosphate dehydrogenase; Validated | 99.68 | |
| PRK11750 | 1485 | gltB glutamate synthase subunit alpha; Provisional | 99.66 | |
| TIGR03151 | 307 | enACPred_II putative enoyl-(acyl-carrier-protein) | 99.65 | |
| PF03060 | 330 | NMO: Nitronate monooxygenase; InterPro: IPR004136 | 99.61 | |
| TIGR00736 | 231 | nifR3_rel_arch TIM-barrel protein, putative. Membe | 99.61 | |
| KOG2550 | 503 | consensus IMP dehydrogenase/GMP reductase [Nucleot | 99.51 | |
| cd04730 | 236 | NPD_like 2-Nitropropane dioxygenase (NPD), one of | 99.51 | |
| cd04743 | 320 | NPD_PKS 2-Nitropropane dioxygenase (NPD)-like doma | 99.43 | |
| COG2070 | 336 | Dioxygenases related to 2-nitropropane dioxygenase | 99.42 | |
| PRK13523 | 337 | NADPH dehydrogenase NamA; Provisional | 99.29 | |
| cd04742 | 418 | NPD_FabD 2-Nitropropane dioxygenase (NPD)-like dom | 99.28 | |
| KOG2333 | 614 | consensus Uncharacterized conserved protein [Gener | 99.27 | |
| cd04722 | 200 | TIM_phosphate_binding TIM barrel proteins share a | 99.26 | |
| TIGR02814 | 444 | pfaD_fam PfaD family protein. The protein PfaD is | 99.23 | |
| cd02803 | 327 | OYE_like_FMN_family Old yellow enzyme (OYE)-like F | 99.21 | |
| KOG1799 | 471 | consensus Dihydropyrimidine dehydrogenase [Nucleot | 99.19 | |
| cd04734 | 343 | OYE_like_3_FMN Old yellow enzyme (OYE)-related FMN | 99.13 | |
| cd02932 | 336 | OYE_YqiM_FMN Old yellow enzyme (OYE) YqjM-like FMN | 99.09 | |
| PRK01130 | 221 | N-acetylmannosamine-6-phosphate 2-epimerase; Provi | 99.06 | |
| cd04735 | 353 | OYE_like_4_FMN Old yellow enzyme (OYE)-related FMN | 99.02 | |
| cd02931 | 382 | ER_like_FMN Enoate reductase (ER)-like FMN-binding | 99.01 | |
| cd04729 | 219 | NanE N-acetylmannosamine-6-phosphate epimerase (Na | 99.0 | |
| cd04747 | 361 | OYE_like_5_FMN Old yellow enzyme (OYE)-related FMN | 98.97 | |
| cd02930 | 353 | DCR_FMN 2,4-dienoyl-CoA reductase (DCR) FMN-bindin | 98.91 | |
| PRK08255 | 765 | salicylyl-CoA 5-hydroxylase; Reviewed | 98.9 | |
| cd02933 | 338 | OYE_like_FMN Old yellow enzyme (OYE)-like FMN bind | 98.89 | |
| PF04131 | 192 | NanE: Putative N-acetylmannosamine-6-phosphate epi | 98.86 | |
| cd04733 | 338 | OYE_like_2_FMN Old yellow enzyme (OYE)-related FMN | 98.82 | |
| COG1902 | 363 | NemA NADH:flavin oxidoreductases, Old Yellow Enzym | 98.81 | |
| cd02929 | 370 | TMADH_HD_FMN Trimethylamine dehydrogenase (TMADH) | 98.75 | |
| cd00331 | 217 | IGPS Indole-3-glycerol phosphate synthase (IGPS); | 98.75 | |
| PRK10605 | 362 | N-ethylmaleimide reductase; Provisional | 98.72 | |
| cd04727 | 283 | pdxS PdxS is a subunit of the pyridoxal 5'-phospha | 98.72 | |
| TIGR00343 | 287 | pyridoxal 5'-phosphate synthase, synthase subunit | 98.64 | |
| COG3010 | 229 | NanE Putative N-acetylmannosamine-6-phosphate epim | 98.61 | |
| PRK13585 | 241 | 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)met | 98.59 | |
| PRK00278 | 260 | trpC indole-3-glycerol-phosphate synthase; Reviewe | 98.59 | |
| PRK07695 | 201 | transcriptional regulator TenI; Provisional | 98.58 | |
| TIGR00262 | 256 | trpA tryptophan synthase, alpha subunit. Tryptopha | 98.55 | |
| PRK13125 | 244 | trpA tryptophan synthase subunit alpha; Provisiona | 98.52 | |
| PRK04180 | 293 | pyridoxal biosynthesis lyase PdxS; Provisional | 98.52 | |
| PF00724 | 341 | Oxidored_FMN: NADH:flavin oxidoreductase / NADH ox | 98.5 | |
| PRK09140 | 206 | 2-dehydro-3-deoxy-6-phosphogalactonate aldolase; R | 98.47 | |
| PRK06552 | 213 | keto-hydroxyglutarate-aldolase/keto-deoxy-phosphog | 98.46 | |
| PRK14024 | 241 | phosphoribosyl isomerase A; Provisional | 98.45 | |
| cd04731 | 243 | HisF The cyclase subunit of imidazoleglycerol phos | 98.42 | |
| PRK01033 | 258 | imidazole glycerol phosphate synthase subunit HisF | 98.42 | |
| cd04728 | 248 | ThiG Thiazole synthase (ThiG) is the tetrameric en | 98.4 | |
| PRK02083 | 253 | imidazole glycerol phosphate synthase subunit HisF | 98.4 | |
| CHL00200 | 263 | trpA tryptophan synthase alpha subunit; Provisiona | 98.39 | |
| PRK00208 | 250 | thiG thiazole synthase; Reviewed | 98.36 | |
| cd00452 | 190 | KDPG_aldolase KDPG and KHG aldolase. This family b | 98.35 | |
| cd04732 | 234 | HisA HisA. Phosphoribosylformimino-5-aminoimidazol | 98.35 | |
| PRK00748 | 233 | 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)met | 98.32 | |
| KOG2334 | 477 | consensus tRNA-dihydrouridine synthase [Translatio | 98.32 | |
| TIGR00007 | 230 | phosphoribosylformimino-5-aminoimidazole carboxami | 98.31 | |
| TIGR03572 | 232 | WbuZ glycosyl amidation-associated protein WbuZ. T | 98.3 | |
| PRK13111 | 258 | trpA tryptophan synthase subunit alpha; Provisiona | 98.29 | |
| KOG0399 | 2142 | consensus Glutamate synthase [Amino acid transport | 98.29 | |
| PRK00507 | 221 | deoxyribose-phosphate aldolase; Provisional | 98.25 | |
| TIGR00735 | 254 | hisF imidazoleglycerol phosphate synthase, cyclase | 98.22 | |
| cd04731 | 243 | HisF The cyclase subunit of imidazoleglycerol phos | 98.17 | |
| PLN02591 | 250 | tryptophan synthase | 98.12 | |
| PRK02083 | 253 | imidazole glycerol phosphate synthase subunit HisF | 98.09 | |
| TIGR00735 | 254 | hisF imidazoleglycerol phosphate synthase, cyclase | 98.09 | |
| PRK07455 | 187 | keto-hydroxyglutarate-aldolase/keto-deoxy-phosphog | 98.08 | |
| PF00218 | 254 | IGPS: Indole-3-glycerol phosphate synthase; InterP | 98.07 | |
| COG0107 | 256 | HisF Imidazoleglycerol-phosphate synthase [Amino a | 98.06 | |
| PF05690 | 247 | ThiG: Thiazole biosynthesis protein ThiG; InterPro | 98.05 | |
| PRK00043 | 212 | thiE thiamine-phosphate pyrophosphorylase; Reviewe | 98.04 | |
| PRK13957 | 247 | indole-3-glycerol-phosphate synthase; Provisional | 98.03 | |
| TIGR01304 | 369 | IMP_DH_rel_2 IMP dehydrogenase family protein. Thi | 98.0 | |
| TIGR01182 | 204 | eda Entner-Doudoroff aldolase. 2-deydro-3-deoxypho | 97.98 | |
| COG0134 | 254 | TrpC Indole-3-glycerol phosphate synthase [Amino a | 97.98 | |
| cd04724 | 242 | Tryptophan_synthase_alpha Ttryptophan synthase (TR | 97.98 | |
| TIGR03128 | 206 | RuMP_HxlA 3-hexulose-6-phosphate synthase. at the | 97.92 | |
| cd00564 | 196 | TMP_TenI Thiamine monophosphate synthase (TMP synt | 97.91 | |
| PRK05848 | 273 | nicotinate-nucleotide pyrophosphorylase; Provision | 97.9 | |
| cd04732 | 234 | HisA HisA. Phosphoribosylformimino-5-aminoimidazol | 97.88 | |
| cd00945 | 201 | Aldolase_Class_I Class I aldolases. The class I al | 97.87 | |
| TIGR00875 | 213 | fsa_talC_mipB fructose-6-phosphate aldolase, TalC/ | 97.87 | |
| PRK07114 | 222 | keto-hydroxyglutarate-aldolase/keto-deoxy-phosphog | 97.86 | |
| PRK00748 | 233 | 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)met | 97.85 | |
| CHL00162 | 267 | thiG thiamin biosynthesis protein G; Validated | 97.84 | |
| PRK13802 | 695 | bifunctional indole-3-glycerol phosphate synthase/ | 97.83 | |
| TIGR00126 | 211 | deoC deoxyribose-phosphate aldolase. Deoxyribose-p | 97.82 | |
| TIGR00078 | 265 | nadC nicotinate-nucleotide pyrophosphorylase. Syno | 97.82 | |
| PLN02411 | 391 | 12-oxophytodienoate reductase | 97.81 | |
| PRK05742 | 277 | nicotinate-nucleotide pyrophosphorylase; Provision | 97.8 | |
| PRK08649 | 368 | inosine 5-monophosphate dehydrogenase; Validated | 97.77 | |
| COG0214 | 296 | SNZ1 Pyridoxine biosynthesis enzyme [Coenzyme meta | 97.77 | |
| cd00956 | 211 | Transaldolase_FSA Transaldolase-like fructose-6-ph | 97.76 | |
| cd00959 | 203 | DeoC 2-deoxyribose-5-phosphate aldolase (DERA) of | 97.75 | |
| PRK06806 | 281 | fructose-bisphosphate aldolase; Provisional | 97.75 | |
| PRK09427 | 454 | bifunctional indole-3-glycerol phosphate synthase/ | 97.74 | |
| TIGR00734 | 221 | hisAF_rel hisA/hisF family protein. This alignment | 97.73 | |
| PRK07226 | 267 | fructose-bisphosphate aldolase; Provisional | 97.72 | |
| COG0159 | 265 | TrpA Tryptophan synthase alpha chain [Amino acid t | 97.69 | |
| PRK04180 | 293 | pyridoxal biosynthesis lyase PdxS; Provisional | 97.68 | |
| TIGR00693 | 196 | thiE thiamine-phosphate pyrophosphorylase. This mo | 97.68 | |
| cd01572 | 268 | QPRTase Quinolinate phosphoribosyl transferase (QA | 97.67 | |
| PRK14024 | 241 | phosphoribosyl isomerase A; Provisional | 97.67 | |
| PRK07428 | 288 | nicotinate-nucleotide pyrophosphorylase; Provision | 97.66 | |
| PRK13587 | 234 | 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)met | 97.65 | |
| PRK06512 | 221 | thiamine-phosphate pyrophosphorylase; Provisional | 97.65 | |
| PRK01362 | 214 | putative translaldolase; Provisional | 97.65 | |
| cd04726 | 202 | KGPDC_HPS 3-Keto-L-gulonate 6-phosphate decarboxyl | 97.64 | |
| PLN02460 | 338 | indole-3-glycerol-phosphate synthase | 97.63 | |
| TIGR01163 | 210 | rpe ribulose-phosphate 3-epimerase. This family co | 97.61 | |
| PRK08883 | 220 | ribulose-phosphate 3-epimerase; Provisional | 97.61 | |
| PRK12656 | 222 | fructose-6-phosphate aldolase; Reviewed | 97.6 | |
| PF00977 | 229 | His_biosynth: Histidine biosynthesis protein; Inte | 97.59 | |
| PRK02615 | 347 | thiamine-phosphate pyrophosphorylase; Provisional | 97.57 | |
| PRK08385 | 278 | nicotinate-nucleotide pyrophosphorylase; Provision | 97.55 | |
| PRK12653 | 220 | fructose-6-phosphate aldolase; Reviewed | 97.55 | |
| cd00405 | 203 | PRAI Phosphoribosylanthranilate isomerase (PRAI) c | 97.54 | |
| PF00290 | 259 | Trp_syntA: Tryptophan synthase alpha chain; InterP | 97.54 | |
| cd00958 | 235 | DhnA Class I fructose-1,6-bisphosphate (FBP) aldol | 97.54 | |
| PLN02334 | 229 | ribulose-phosphate 3-epimerase | 97.54 | |
| PRK12655 | 220 | fructose-6-phosphate aldolase; Reviewed | 97.53 | |
| cd01573 | 272 | modD_like ModD; Quinolinate phosphoribosyl transfe | 97.53 | |
| TIGR03572 | 232 | WbuZ glycosyl amidation-associated protein WbuZ. T | 97.51 | |
| PRK13585 | 241 | 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)met | 97.51 | |
| cd04723 | 233 | HisA_HisF Phosphoribosylformimino-5-aminoimidazole | 97.5 | |
| PRK07028 | 430 | bifunctional hexulose-6-phosphate synthase/ribonuc | 97.48 | |
| PRK06015 | 201 | keto-hydroxyglutarate-aldolase/keto-deoxy-phosphog | 97.48 | |
| PF01791 | 236 | DeoC: DeoC/LacD family aldolase; InterPro: IPR0029 | 97.45 | |
| PRK08072 | 277 | nicotinate-nucleotide pyrophosphorylase; Provision | 97.44 | |
| PRK11840 | 326 | bifunctional sulfur carrier protein/thiazole synth | 97.44 | |
| COG2022 | 262 | ThiG Uncharacterized enzyme of thiazole biosynthes | 97.43 | |
| PRK04128 | 228 | 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)met | 97.41 | |
| COG0106 | 241 | HisA Phosphoribosylformimino-5-aminoimidazole carb | 97.41 | |
| COG0107 | 256 | HisF Imidazoleglycerol-phosphate synthase [Amino a | 97.4 | |
| PRK14114 | 241 | 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)met | 97.4 | |
| cd01568 | 269 | QPRTase_NadC Quinolinate phosphoribosyl transferas | 97.4 | |
| PRK06015 | 201 | keto-hydroxyglutarate-aldolase/keto-deoxy-phosphog | 97.39 | |
| TIGR01859 | 282 | fruc_bis_ald_ fructose-1,6-bisphosphate aldolase, | 97.38 | |
| TIGR00007 | 230 | phosphoribosylformimino-5-aminoimidazole carboxami | 97.38 | |
| TIGR02129 | 253 | hisA_euk phosphoribosylformimino-5-aminoimidazole | 97.38 | |
| PRK13587 | 234 | 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)met | 97.37 | |
| cd00429 | 211 | RPE Ribulose-5-phosphate 3-epimerase (RPE). This e | 97.36 | |
| PF02581 | 180 | TMP-TENI: Thiamine monophosphate synthase/TENI; In | 97.36 | |
| PF01081 | 196 | Aldolase: KDPG and KHG aldolase; InterPro: IPR0008 | 97.36 | |
| COG0352 | 211 | ThiE Thiamine monophosphate synthase [Coenzyme met | 97.32 | |
| TIGR01919 | 243 | hisA-trpF 1-(5-phosphoribosyl)-5-[(5-phosphoribosy | 97.3 | |
| PRK12376 | 236 | putative translaldolase; Provisional | 97.3 | |
| PRK01033 | 258 | imidazole glycerol phosphate synthase subunit HisF | 97.3 | |
| PRK12290 | 437 | thiE thiamine-phosphate pyrophosphorylase; Reviewe | 97.3 | |
| COG0269 | 217 | SgbH 3-hexulose-6-phosphate synthase and related p | 97.29 | |
| COG0274 | 228 | DeoC Deoxyribose-phosphate aldolase [Nucleotide tr | 97.27 | |
| PTZ00170 | 228 | D-ribulose-5-phosphate 3-epimerase; Provisional | 97.26 | |
| PRK06801 | 286 | hypothetical protein; Provisional | 97.24 | |
| PRK04302 | 223 | triosephosphate isomerase; Provisional | 97.19 | |
| cd04723 | 233 | HisA_HisF Phosphoribosylformimino-5-aminoimidazole | 97.16 | |
| PF00977 | 229 | His_biosynth: Histidine biosynthesis protein; Inte | 97.16 | |
| PRK06559 | 290 | nicotinate-nucleotide pyrophosphorylase; Provision | 97.13 | |
| PRK04169 | 232 | geranylgeranylglyceryl phosphate synthase-like pro | 97.13 | |
| PRK05718 | 212 | keto-hydroxyglutarate-aldolase/keto-deoxy-phosphog | 97.12 | |
| PRK13397 | 250 | 3-deoxy-7-phosphoheptulonate synthase; Provisional | 97.09 | |
| cd02812 | 219 | PcrB_like PcrB_like proteins. One member of this f | 97.08 | |
| PRK09016 | 296 | quinolinate phosphoribosyltransferase; Validated | 97.05 | |
| PRK13307 | 391 | bifunctional formaldehyde-activating enzyme/3-hexu | 97.04 | |
| TIGR01769 | 205 | GGGP geranylgeranylglyceryl phosphate synthase. Th | 97.02 | |
| PRK07896 | 289 | nicotinate-nucleotide pyrophosphorylase; Provision | 97.0 | |
| PRK05718 | 212 | keto-hydroxyglutarate-aldolase/keto-deoxy-phosphog | 96.99 | |
| PRK13586 | 232 | 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)met | 96.98 | |
| TIGR02134 | 236 | transald_staph transaldolase. This small family of | 96.98 | |
| PRK06106 | 281 | nicotinate-nucleotide pyrophosphorylase; Provision | 96.97 | |
| PF01729 | 169 | QRPTase_C: Quinolinate phosphoribosyl transferase, | 96.94 | |
| PRK14114 | 241 | 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)met | 96.94 | |
| PRK13586 | 232 | 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)met | 96.93 | |
| COG0800 | 211 | Eda 2-keto-3-deoxy-6-phosphogluconate aldolase [Ca | 96.89 | |
| PRK08185 | 283 | hypothetical protein; Provisional | 96.87 | |
| PRK04128 | 228 | 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)met | 96.85 | |
| KOG1606 | 296 | consensus Stationary phase-induced protein, SOR/SN | 96.84 | |
| PRK05581 | 220 | ribulose-phosphate 3-epimerase; Validated | 96.84 | |
| PRK06978 | 294 | nicotinate-nucleotide pyrophosphorylase; Provision | 96.83 | |
| TIGR01334 | 277 | modD putative molybdenum utilization protein ModD. | 96.81 | |
| PRK06096 | 284 | molybdenum transport protein ModD; Provisional | 96.8 | |
| PRK11750 | 1485 | gltB glutamate synthase subunit alpha; Provisional | 96.77 | |
| PLN02446 | 262 | (5-phosphoribosyl)-5-[(5-phosphoribosylamino)methy | 96.77 | |
| TIGR01919 | 243 | hisA-trpF 1-(5-phosphoribosyl)-5-[(5-phosphoribosy | 96.77 | |
| TIGR01768 | 223 | GGGP-family geranylgeranylglyceryl phosphate synth | 96.76 | |
| PRK12595 | 360 | bifunctional 3-deoxy-7-phosphoheptulonate synthase | 96.73 | |
| PLN02446 | 262 | (5-phosphoribosyl)-5-[(5-phosphoribosylamino)methy | 96.73 | |
| TIGR00343 | 287 | pyridoxal 5'-phosphate synthase, synthase subunit | 96.73 | |
| COG0036 | 220 | Rpe Pentose-5-phosphate-3-epimerase [Carbohydrate | 96.73 | |
| PF04898 | 287 | Glu_syn_central: Glutamate synthase central domain | 96.71 | |
| PLN02898 | 502 | HMP-P kinase/thiamin-monophosphate pyrophosphoryla | 96.66 | |
| PRK07315 | 293 | fructose-bisphosphate aldolase; Provisional | 96.65 | |
| PRK07998 | 283 | gatY putative fructose-1,6-bisphosphate aldolase; | 96.65 | |
| PF09370 | 268 | TIM-br_sig_trns: TIM-barrel signal transduction pr | 96.63 | |
| PRK06543 | 281 | nicotinate-nucleotide pyrophosphorylase; Provision | 96.62 | |
| PRK08999 | 312 | hypothetical protein; Provisional | 96.61 | |
| TIGR00259 | 257 | thylakoid_BtpA membrane complex biogenesis protein | 96.55 | |
| PRK05283 | 257 | deoxyribose-phosphate aldolase; Provisional | 96.54 | |
| TIGR01949 | 258 | AroFGH_arch predicted phospho-2-dehydro-3-deoxyhep | 96.54 | |
| PF04481 | 242 | DUF561: Protein of unknown function (DUF561); Inte | 96.52 | |
| cd04727 | 283 | pdxS PdxS is a subunit of the pyridoxal 5'-phospha | 96.52 | |
| PRK03512 | 211 | thiamine-phosphate pyrophosphorylase; Provisional | 96.47 | |
| PF01884 | 230 | PcrB: PcrB family; InterPro: IPR008205 This entry | 96.44 | |
| PLN02617 | 538 | imidazole glycerol phosphate synthase hisHF | 96.43 | |
| PF04131 | 192 | NanE: Putative N-acetylmannosamine-6-phosphate epi | 96.36 | |
| PRK08673 | 335 | 3-deoxy-7-phosphoheptulonate synthase; Reviewed | 96.34 | |
| TIGR01182 | 204 | eda Entner-Doudoroff aldolase. 2-deydro-3-deoxypho | 96.33 | |
| PRK08745 | 223 | ribulose-phosphate 3-epimerase; Provisional | 96.31 | |
| PRK08227 | 264 | autoinducer 2 aldolase; Validated | 96.29 | |
| PRK06843 | 404 | inosine 5-monophosphate dehydrogenase; Validated | 96.28 | |
| PRK09722 | 229 | allulose-6-phosphate 3-epimerase; Provisional | 96.26 | |
| PRK08091 | 228 | ribulose-phosphate 3-epimerase; Validated | 96.24 | |
| PLN02617 | 538 | imidazole glycerol phosphate synthase hisHF | 96.21 | |
| PRK09517 | 755 | multifunctional thiamine-phosphate pyrophosphoryla | 96.19 | |
| PRK03170 | 292 | dihydrodipicolinate synthase; Provisional | 96.17 | |
| TIGR02129 | 253 | hisA_euk phosphoribosylformimino-5-aminoimidazole | 96.04 | |
| PTZ00314 | 495 | inosine-5'-monophosphate dehydrogenase; Provisiona | 96.01 | |
| cd00381 | 325 | IMPDH IMPDH: The catalytic domain of the inosine m | 95.99 | |
| cd00947 | 276 | TBP_aldolase_IIB Tagatose-1,6-bisphosphate (TBP) a | 95.95 | |
| PLN02417 | 280 | dihydrodipicolinate synthase | 95.91 | |
| cd00377 | 243 | ICL_PEPM Members of the ICL/PEPM enzyme family cat | 95.9 | |
| PLN02716 | 308 | nicotinate-nucleotide diphosphorylase (carboxylati | 95.9 | |
| PRK13398 | 266 | 3-deoxy-7-phosphoheptulonate synthase; Provisional | 95.87 | |
| COG0106 | 241 | HisA Phosphoribosylformimino-5-aminoimidazole carb | 95.85 | |
| TIGR01302 | 450 | IMP_dehydrog inosine-5'-monophosphate dehydrogenas | 95.81 | |
| PLN02274 | 505 | inosine-5'-monophosphate dehydrogenase | 95.8 | |
| PRK09195 | 284 | gatY tagatose-bisphosphate aldolase; Reviewed | 95.73 | |
| TIGR02313 | 294 | HpaI-NOT-DapA 2,4-dihydroxyhept-2-ene-1,7-dioic ac | 95.72 | |
| cd04729 | 219 | NanE N-acetylmannosamine-6-phosphate epimerase (Na | 95.71 | |
| PRK03620 | 303 | 5-dehydro-4-deoxyglucarate dehydratase; Provisiona | 95.69 | |
| cd00452 | 190 | KDPG_aldolase KDPG and KHG aldolase. This family b | 95.67 | |
| KOG4201 | 289 | consensus Anthranilate synthase component II [Amin | 95.65 | |
| PRK13396 | 352 | 3-deoxy-7-phosphoheptulonate synthase; Provisional | 95.63 | |
| cd00951 | 289 | KDGDH 5-dehydro-4-deoxyglucarate dehydratase, also | 95.61 | |
| PRK06552 | 213 | keto-hydroxyglutarate-aldolase/keto-deoxy-phosphog | 95.61 | |
| PRK14057 | 254 | epimerase; Provisional | 95.6 | |
| PF03437 | 254 | BtpA: BtpA family; InterPro: IPR005137 Photosystem | 95.6 | |
| TIGR02313 | 294 | HpaI-NOT-DapA 2,4-dihydroxyhept-2-ene-1,7-dioic ac | 95.58 | |
| TIGR00734 | 221 | hisAF_rel hisA/hisF family protein. This alignment | 95.54 | |
| cd00952 | 309 | CHBPH_aldolase Trans-o-hydroxybenzylidenepyruvate | 95.48 | |
| cd00408 | 281 | DHDPS-like Dihydrodipicolinate synthase family. A | 95.47 | |
| PRK07107 | 502 | inosine 5-monophosphate dehydrogenase; Validated | 95.47 | |
| PF00478 | 352 | IMPDH: IMP dehydrogenase / GMP reductase domain; I | 95.45 | |
| cd00408 | 281 | DHDPS-like Dihydrodipicolinate synthase family. A | 95.45 | |
| TIGR01163 | 210 | rpe ribulose-phosphate 3-epimerase. This family co | 95.42 | |
| PRK07807 | 479 | inosine 5-monophosphate dehydrogenase; Validated | 95.37 | |
| TIGR01306 | 321 | GMP_reduct_2 guanosine monophosphate reductase, ba | 95.32 | |
| PF00834 | 201 | Ribul_P_3_epim: Ribulose-phosphate 3 epimerase fam | 95.3 | |
| cd00331 | 217 | IGPS Indole-3-glycerol phosphate synthase (IGPS); | 95.3 | |
| COG0329 | 299 | DapA Dihydrodipicolinate synthase/N-acetylneuramin | 95.22 | |
| PRK08005 | 210 | epimerase; Validated | 95.21 | |
| TIGR00683 | 290 | nanA N-acetylneuraminate lyase. N-acetylneuraminat | 95.17 | |
| COG2876 | 286 | AroA 3-deoxy-D-arabino-heptulosonate 7-phosphate ( | 95.15 | |
| cd00950 | 284 | DHDPS Dihydrodipicolinate synthase (DHDPS) is a ke | 95.14 | |
| TIGR03249 | 296 | KdgD 5-dehydro-4-deoxyglucarate dehydratase. 5-deh | 95.14 | |
| PRK01130 | 221 | N-acetylmannosamine-6-phosphate 2-epimerase; Provi | 95.11 | |
| PRK09250 | 348 | fructose-bisphosphate aldolase; Provisional | 95.08 | |
| TIGR01361 | 260 | DAHP_synth_Bsub phospho-2-dehydro-3-deoxyheptonate | 95.06 | |
| PF01081 | 196 | Aldolase: KDPG and KHG aldolase; InterPro: IPR0008 | 95.04 | |
| COG3010 | 229 | NanE Putative N-acetylmannosamine-6-phosphate epim | 94.92 | |
| PRK13957 | 247 | indole-3-glycerol-phosphate synthase; Provisional | 94.9 | |
| PRK04147 | 293 | N-acetylneuraminate lyase; Provisional | 94.88 | |
| TIGR01303 | 475 | IMP_DH_rel_1 IMP dehydrogenase family protein. Thi | 94.86 | |
| TIGR00674 | 285 | dapA dihydrodipicolinate synthase. Dihydrodipicoli | 94.82 | |
| PRK06852 | 304 | aldolase; Validated | 94.79 | |
| PRK13306 | 216 | ulaD 3-keto-L-gulonate-6-phosphate decarboxylase; | 94.79 | |
| cd00954 | 288 | NAL N-Acetylneuraminic acid aldolase, also called | 94.76 | |
| cd00950 | 284 | DHDPS Dihydrodipicolinate synthase (DHDPS) is a ke | 94.75 | |
| TIGR01305 | 343 | GMP_reduct_1 guanosine monophosphate reductase, eu | 94.75 | |
| TIGR01858 | 282 | tag_bisphos_ald class II aldolase, tagatose bispho | 94.73 | |
| PRK07565 | 334 | dihydroorotate dehydrogenase 2; Reviewed | 94.73 | |
| PRK07114 | 222 | keto-hydroxyglutarate-aldolase/keto-deoxy-phosphog | 94.72 | |
| COG0157 | 280 | NadC Nicotinate-nucleotide pyrophosphorylase [Coen | 94.71 | |
| PRK07709 | 285 | fructose-bisphosphate aldolase; Provisional | 94.68 | |
| COG0329 | 299 | DapA Dihydrodipicolinate synthase/N-acetylneuramin | 94.65 | |
| PF00701 | 289 | DHDPS: Dihydrodipicolinate synthetase family; Inte | 94.63 | |
| PRK05458 | 326 | guanosine 5'-monophosphate oxidoreductase; Provisi | 94.61 | |
| PRK09140 | 206 | 2-dehydro-3-deoxy-6-phosphogalactonate aldolase; R | 94.6 | |
| PRK13813 | 215 | orotidine 5'-phosphate decarboxylase; Provisional | 94.56 | |
| PRK05567 | 486 | inosine 5'-monophosphate dehydrogenase; Reviewed | 94.53 | |
| TIGR03249 | 296 | KdgD 5-dehydro-4-deoxyglucarate dehydratase. 5-deh | 94.53 | |
| COG1830 | 265 | FbaB DhnA-type fructose-1,6-bisphosphate aldolase | 94.49 | |
| PF03932 | 201 | CutC: CutC family; InterPro: IPR005627 Copper tran | 94.46 | |
| KOG2335 | 358 | consensus tRNA-dihydrouridine synthase [Translatio | 94.45 | |
| cd00945 | 201 | Aldolase_Class_I Class I aldolases. The class I al | 94.32 | |
| PRK12457 | 281 | 2-dehydro-3-deoxyphosphooctonate aldolase; Provisi | 94.29 | |
| PRK03170 | 292 | dihydrodipicolinate synthase; Provisional | 94.28 | |
| PLN02591 | 250 | tryptophan synthase | 94.24 | |
| CHL00200 | 263 | trpA tryptophan synthase alpha subunit; Provisiona | 94.16 | |
| TIGR03569 | 329 | NeuB_NnaB N-acetylneuraminate synthase. This famil | 94.04 | |
| TIGR00167 | 288 | cbbA ketose-bisphosphate aldolases. fructose-bisph | 94.03 | |
| PRK12737 | 284 | gatY tagatose-bisphosphate aldolase; Reviewed | 93.94 | |
| PRK05096 | 346 | guanosine 5'-monophosphate oxidoreductase; Provisi | 93.84 | |
| cd00439 | 252 | Transaldolase Transaldolase. Enzymes found in the | 93.65 | |
| cd00951 | 289 | KDGDH 5-dehydro-4-deoxyglucarate dehydratase, also | 93.64 | |
| TIGR00736 | 231 | nifR3_rel_arch TIM-barrel protein, putative. Membe | 93.48 | |
| cd02809 | 299 | alpha_hydroxyacid_oxid_FMN Family of homologous FM | 93.47 | |
| PF04309 | 175 | G3P_antiterm: Glycerol-3-phosphate responsive anti | 93.45 | |
| PRK05835 | 307 | fructose-bisphosphate aldolase; Provisional | 93.43 | |
| PRK00230 | 230 | orotidine 5'-phosphate decarboxylase; Reviewed | 93.41 | |
| PF01207 | 309 | Dus: Dihydrouridine synthase (Dus); InterPro: IPR0 | 93.39 | |
| cd03319 | 316 | L-Ala-DL-Glu_epimerase L-Ala-D/L-Glu epimerase cat | 93.38 | |
| cd04728 | 248 | ThiG Thiazole synthase (ThiG) is the tetrameric en | 93.35 | |
| cd06556 | 240 | ICL_KPHMT Members of the ICL/PEPM_KPHMT enzyme sup | 93.32 | |
| TIGR01362 | 258 | KDO8P_synth 3-deoxy-8-phosphooctulonate synthase. | 93.31 | |
| PRK12738 | 286 | kbaY tagatose-bisphosphate aldolase; Reviewed | 93.21 | |
| PRK08610 | 286 | fructose-bisphosphate aldolase; Reviewed | 93.17 | |
| COG1646 | 240 | Predicted phosphate-binding enzymes, TIM-barrel fo | 93.15 | |
| cd00516 | 281 | PRTase_typeII Phosphoribosyltransferase (PRTase) t | 93.1 | |
| COG0135 | 208 | TrpF Phosphoribosylanthranilate isomerase [Amino a | 93.04 | |
| cd01571 | 302 | NAPRTase_B Nicotinate phosphoribosyltransferase (N | 92.94 | |
| TIGR00674 | 285 | dapA dihydrodipicolinate synthase. Dihydrodipicoli | 92.71 | |
| PRK00208 | 250 | thiG thiazole synthase; Reviewed | 92.46 | |
| PRK05198 | 264 | 2-dehydro-3-deoxyphosphooctonate aldolase; Provisi | 92.38 | |
| PRK10550 | 312 | tRNA-dihydrouridine synthase C; Provisional | 92.33 | |
| TIGR02320 | 285 | PEP_mutase phosphoenolpyruvate phosphomutase. A cl | 92.22 | |
| PRK05286 | 344 | dihydroorotate dehydrogenase 2; Reviewed | 92.22 | |
| PF01116 | 287 | F_bP_aldolase: Fructose-bisphosphate aldolase clas | 92.19 | |
| cd02810 | 289 | DHOD_DHPD_FMN Dihydroorotate dehydrogenase (DHOD) | 92.16 | |
| PF13714 | 238 | PEP_mutase: Phosphoenolpyruvate phosphomutase; PDB | 92.04 | |
| TIGR02317 | 285 | prpB methylisocitrate lyase. Members of this famil | 92.0 | |
| cd04739 | 325 | DHOD_like Dihydroorotate dehydrogenase (DHOD) like | 91.97 | |
| PRK11320 | 292 | prpB 2-methylisocitrate lyase; Provisional | 91.78 | |
| TIGR00262 | 256 | trpA tryptophan synthase, alpha subunit. Tryptopha | 91.72 | |
| COG0434 | 263 | SgcQ Predicted TIM-barrel enzyme [General function | 91.65 | |
| PRK03620 | 303 | 5-dehydro-4-deoxyglucarate dehydratase; Provisiona | 91.49 | |
| PRK11572 | 248 | copper homeostasis protein CutC; Provisional | 91.21 | |
| PLN02535 | 364 | glycolate oxidase | 91.15 | |
| PLN03033 | 290 | 2-dehydro-3-deoxyphosphooctonate aldolase; Provisi | 91.12 | |
| PF00701 | 289 | DHDPS: Dihydrodipicolinate synthetase family; Inte | 91.12 | |
| TIGR01521 | 347 | FruBisAldo_II_B fructose-bisphosphate aldolase, cl | 90.98 | |
| COG0042 | 323 | tRNA-dihydrouridine synthase [Translation, ribosom | 90.89 | |
| PRK09196 | 347 | fructose-1,6-bisphosphate aldolase; Reviewed | 90.88 | |
| PF03932 | 201 | CutC: CutC family; InterPro: IPR005627 Copper tran | 90.66 | |
| PRK12309 | 391 | transaldolase/EF-hand domain-containing protein; P | 90.65 | |
| PRK11572 | 248 | copper homeostasis protein CutC; Provisional | 90.53 | |
| COG0352 | 211 | ThiE Thiamine monophosphate synthase [Coenzyme met | 90.48 | |
| cd04726 | 202 | KGPDC_HPS 3-Keto-L-gulonate 6-phosphate decarboxyl | 90.43 | |
| TIGR02319 | 294 | CPEP_Pphonmut carboxyvinyl-carboxyphosphonate phos | 90.34 | |
| PRK13399 | 347 | fructose-1,6-bisphosphate aldolase; Provisional | 90.34 | |
| COG3142 | 241 | CutC Uncharacterized protein involved in copper re | 90.28 | |
| COG1954 | 181 | GlpP Glycerol-3-phosphate responsive antiterminato | 90.15 | |
| PF00218 | 254 | IGPS: Indole-3-glycerol phosphate synthase; InterP | 89.79 | |
| TIGR03569 | 329 | NeuB_NnaB N-acetylneuraminate synthase. This famil | 89.75 | |
| PRK04147 | 293 | N-acetylneuraminate lyase; Provisional | 89.69 | |
| cd00957 | 313 | Transaldolase_TalAB Transaldolases including both | 89.58 | |
| PRK00278 | 260 | trpC indole-3-glycerol-phosphate synthase; Reviewe | 89.53 | |
| cd00377 | 243 | ICL_PEPM Members of the ICL/PEPM enzyme family cat | 89.52 | |
| PTZ00411 | 333 | transaldolase-like protein; Provisional | 89.4 | |
| KOG2550 | 503 | consensus IMP dehydrogenase/GMP reductase [Nucleot | 89.39 | |
| cd06557 | 254 | KPHMT-like Ketopantoate hydroxymethyltransferase ( | 89.38 | |
| PF05690 | 247 | ThiG: Thiazole biosynthesis protein ThiG; InterPro | 89.36 | |
| cd02911 | 233 | arch_FMN Archeal FMN-binding domain. This family o | 89.36 | |
| TIGR00737 | 319 | nifR3_yhdG putative TIM-barrel protein, nifR3 fami | 89.23 | |
| PRK07455 | 187 | keto-hydroxyglutarate-aldolase/keto-deoxy-phosphog | 89.19 | |
| PRK13111 | 258 | trpA tryptophan synthase subunit alpha; Provisiona | 89.1 | |
| COG2022 | 262 | ThiG Uncharacterized enzyme of thiazole biosynthes | 89.07 | |
| PRK05269 | 318 | transaldolase B; Provisional | 89.05 | |
| TIGR03586 | 327 | PseI pseudaminic acid synthase. | 89.02 | |
| cd02922 | 344 | FCB2_FMN Flavocytochrome b2 (FCB2) FMN-binding dom | 88.9 | |
| TIGR00259 | 257 | thylakoid_BtpA membrane complex biogenesis protein | 88.9 | |
| COG2089 | 347 | SpsE Sialic acid synthase [Cell envelope biogenesi | 88.89 | |
| PRK10415 | 321 | tRNA-dihydrouridine synthase B; Provisional | 88.86 | |
| PRK12857 | 284 | fructose-1,6-bisphosphate aldolase; Reviewed | 88.81 | |
| COG0135 | 208 | TrpF Phosphoribosylanthranilate isomerase [Amino a | 88.8 | |
| PF01702 | 238 | TGT: Queuine tRNA-ribosyltransferase; InterPro: IP | 88.78 | |
| PRK07084 | 321 | fructose-bisphosphate aldolase; Provisional | 88.6 | |
| COG0159 | 265 | TrpA Tryptophan synthase alpha chain [Amino acid t | 88.39 | |
| cd00429 | 211 | RPE Ribulose-5-phosphate 3-epimerase (RPE). This e | 88.3 | |
| TIGR01037 | 300 | pyrD_sub1_fam dihydroorotate dehydrogenase (subfam | 88.11 | |
| COG0800 | 211 | Eda 2-keto-3-deoxy-6-phosphogluconate aldolase [Ca | 88.05 | |
| COG2513 | 289 | PrpB PEP phosphonomutase and related enzymes [Carb | 87.78 | |
| cd04740 | 296 | DHOD_1B_like Dihydroorotate dehydrogenase (DHOD) c | 87.61 | |
| CHL00162 | 267 | thiG thiamin biosynthesis protein G; Validated | 87.59 | |
| PRK09427 | 454 | bifunctional indole-3-glycerol phosphate synthase/ | 87.56 | |
| cd02940 | 299 | DHPD_FMN Dihydropyrimidine dehydrogenase (DHPD) FM | 87.51 | |
| cd02801 | 231 | DUS_like_FMN Dihydrouridine synthase-like (DUS-lik | 87.47 | |
| PLN02858 | 1378 | fructose-bisphosphate aldolase | 87.46 | |
| PRK05265 | 239 | pyridoxine 5'-phosphate synthase; Provisional | 87.31 | |
| TIGR02321 | 290 | Pphn_pyruv_hyd phosphonopyruvate hydrolase. This f | 87.21 | |
| PF00290 | 259 | Trp_syntA: Tryptophan synthase alpha chain; InterP | 87.17 | |
| cd00953 | 279 | KDG_aldolase KDG (2-keto-3-deoxygluconate) aldolas | 87.15 | |
| PRK07259 | 301 | dihydroorotate dehydrogenase 1B; Reviewed | 87.0 | |
| cd00954 | 288 | NAL N-Acetylneuraminic acid aldolase, also called | 86.99 | |
| PRK08318 | 420 | dihydropyrimidine dehydrogenase subunit B; Validat | 86.85 | |
| cd03316 | 357 | MR_like Mandelate racemase (MR)-like subfamily of | 86.77 | |
| TIGR00742 | 318 | yjbN tRNA dihydrouridine synthase A. Members of th | 86.69 | |
| TIGR03586 | 327 | PseI pseudaminic acid synthase. | 86.6 | |
| COG0176 | 239 | MipB Transaldolase [Carbohydrate transport and met | 86.57 | |
| cd06557 | 254 | KPHMT-like Ketopantoate hydroxymethyltransferase ( | 86.49 | |
| PLN02495 | 385 | oxidoreductase, acting on the CH-CH group of donor | 86.48 | |
| cd04738 | 327 | DHOD_2_like Dihydroorotate dehydrogenase (DHOD) cl | 86.14 | |
| TIGR00559 | 237 | pdxJ pyridoxine 5'-phosphate synthase. PdxJ is req | 85.87 | |
| PF03740 | 239 | PdxJ: Pyridoxal phosphate biosynthesis protein Pdx | 85.8 | |
| PF03437 | 254 | BtpA: BtpA family; InterPro: IPR005137 Photosystem | 85.73 | |
| TIGR00693 | 196 | thiE thiamine-phosphate pyrophosphorylase. This mo | 85.58 | |
| COG2070 | 336 | Dioxygenases related to 2-nitropropane dioxygenase | 85.57 | |
| PRK13533 | 487 | 7-cyano-7-deazaguanine tRNA-ribosyltransferase; Pr | 85.47 | |
| PRK02227 | 238 | hypothetical protein; Provisional | 85.27 | |
| cd00405 | 203 | PRAI Phosphoribosylanthranilate isomerase (PRAI) c | 85.21 | |
| COG5564 | 276 | Predicted TIM-barrel enzyme, possibly a dioxygenas | 85.09 | |
| PRK12858 | 340 | tagatose 1,6-diphosphate aldolase; Reviewed | 84.56 | |
| PRK12346 | 316 | transaldolase A; Provisional | 84.4 | |
| COG4981 | 717 | Enoyl reductase domain of yeast-type FAS1 [Lipid m | 84.11 | |
| COG0434 | 263 | SgcQ Predicted TIM-barrel enzyme [General function | 83.97 | |
| cd02811 | 326 | IDI-2_FMN Isopentenyl-diphosphate:dimethylallyl di | 83.85 | |
| PLN02979 | 366 | glycolate oxidase | 83.77 | |
| PF01680 | 208 | SOR_SNZ: SOR/SNZ family; InterPro: IPR001852 Snz1p | 83.69 | |
| TIGR00640 | 132 | acid_CoA_mut_C methylmalonyl-CoA mutase C-terminal | 83.68 | |
| PRK10558 | 256 | alpha-dehydro-beta-deoxy-D-glucarate aldolase; Pro | 83.45 | |
| PRK05437 | 352 | isopentenyl pyrophosphate isomerase; Provisional | 83.33 | |
| TIGR00449 | 367 | tgt_general tRNA-guanine transglycosylases, variou | 83.24 | |
| PRK11840 | 326 | bifunctional sulfur carrier protein/thiazole synth | 83.24 | |
| cd03332 | 383 | LMO_FMN L-Lactate 2-monooxygenase (LMO) FMN-bindin | 83.23 | |
| PRK07188 | 352 | nicotinate phosphoribosyltransferase; Provisional | 83.2 | |
| TIGR00874 | 317 | talAB transaldolase. This family includes the majo | 82.94 | |
| PRK11197 | 381 | lldD L-lactate dehydrogenase; Provisional | 82.73 | |
| PRK13523 | 337 | NADPH dehydrogenase NamA; Provisional | 82.53 | |
| PF03060 | 330 | NMO: Nitronate monooxygenase; InterPro: IPR004136 | 82.32 | |
| TIGR01036 | 335 | pyrD_sub2 dihydroorotate dehydrogenase, subfamily | 82.31 | |
| PRK00311 | 264 | panB 3-methyl-2-oxobutanoate hydroxymethyltransfer | 82.19 | |
| TIGR02320 | 285 | PEP_mutase phosphoenolpyruvate phosphomutase. A cl | 82.04 | |
| PRK13534 | 639 | 7-cyano-7-deazaguanine tRNA-ribosyltransferase; Pr | 81.99 | |
| TIGR03151 | 307 | enACPred_II putative enoyl-(acyl-carrier-protein) | 81.87 | |
| PLN02493 | 367 | probable peroxisomal (S)-2-hydroxy-acid oxidase | 81.86 | |
| COG1519 | 419 | KdtA 3-deoxy-D-manno-octulosonic-acid transferase | 81.68 | |
| PRK05581 | 220 | ribulose-phosphate 3-epimerase; Validated | 81.54 | |
| cd04722 | 200 | TIM_phosphate_binding TIM barrel proteins share a | 81.43 | |
| cd04736 | 361 | MDH_FMN Mandelate dehydrogenase (MDH)-like FMN-bin | 81.42 | |
| TIGR02319 | 294 | CPEP_Pphonmut carboxyvinyl-carboxyphosphonate phos | 81.36 | |
| PF04476 | 235 | DUF556: Protein of unknown function (DUF556); Inte | 81.29 | |
| PF01680 | 208 | SOR_SNZ: SOR/SNZ family; InterPro: IPR001852 Snz1p | 81.27 | |
| PRK12595 | 360 | bifunctional 3-deoxy-7-phosphoheptulonate synthase | 80.83 | |
| cd00564 | 196 | TMP_TenI Thiamine monophosphate synthase (TMP synt | 80.71 | |
| COG0191 | 286 | Fba Fructose/tagatose bisphosphate aldolase [Carbo | 80.65 | |
| TIGR01520 | 357 | FruBisAldo_II_A fructose-bisphosphate aldolase, cl | 80.61 | |
| TIGR01361 | 260 | DAHP_synth_Bsub phospho-2-dehydro-3-deoxyheptonate | 80.57 | |
| PF09370 | 268 | TIM-br_sig_trns: TIM-barrel signal transduction pr | 80.52 | |
| PRK15063 | 428 | isocitrate lyase; Provisional | 80.5 | |
| PF03102 | 241 | NeuB: NeuB family; InterPro: IPR013132 NeuB is the | 80.04 |
| >KOG0538 consensus Glycolate oxidase [Energy production and conversion] | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.8e-91 Score=641.41 Aligned_cols=351 Identities=76% Similarity=1.171 Sum_probs=337.3
Q ss_pred CCChHHHHHHHHHhCCccccccccCCCCchhhHHHhHhccccceeeccccCCCCCCccceeEcCeeeccceEeCcccchh
Q 017718 4 ITNVMEYEAIAKEKLPKMVFDYYASGAEDQWTLQENRNAFSRILFRPRILIDVSKIDMNTTVLGFKISMPIMIAPTAMQK 83 (367)
Q Consensus 4 ~~~~~d~~~~A~~~l~~~~~~y~~~ga~~~~t~~~n~~~~~~i~l~pr~l~~~~~vd~st~i~g~~l~~Pi~iAPm~~~~ 83 (367)
++|++|||+.|+++||+.+|+||.|||+|+.|+++|+++|.||.|+||.|+|++.+|+||+++|.++++||+|||++++.
T Consensus 1 lv~~~dfe~~A~~~L~K~a~dyy~sgA~d~~Tl~~N~~AF~ri~~rPr~L~dVs~iD~sTtvlG~~i~~Pi~iapTa~qk 80 (363)
T KOG0538|consen 1 LVNVDDFEALAKQQLPKMAYDYYESGAEDQETLDENINAFRRILFRPRILRDVSKIDTSTTVLGQKISAPIMIAPTAMQK 80 (363)
T ss_pred CccHHHHHHHHHHhhhHHHHHHHhcCCcchhhHHHHHHHHHhhhccchhheecccccccceeccccccceeEEcchHHHh
Confidence 47999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccCChhhHHHHHHHHHcCCceeecCCCCCCHHHHHhhCC-CceEEEEeecCCHHHHHHHHHHHHHcCCcEEEEecCCCCC
Q 017718 84 MAHPEGEYATARAASAAGTIMTLSSWSTSSVEEVASTGP-GIRFFQLYVYKDRNVVAQLVRRAERAGFKAIALTVDTPRL 162 (367)
Q Consensus 84 l~~~~~e~~~a~aa~~~G~~~~vs~~~~~~~e~i~~~~~-~~~~~QLy~~~d~~~~~~~l~ra~~~G~~ai~itvd~p~~ 162 (367)
|+||+||.+++|+|.++|++|++|+++++|.|||.++.| +..|||||+++|+++++++++|||++||+++++|||+|+.
T Consensus 81 ma~pdGE~~taraa~~~~~~~i~Ss~at~S~EdI~~aap~~~rwfQLYvykdr~It~~Lv~raEk~GfkAlvlTvDtP~l 160 (363)
T KOG0538|consen 81 MAHPDGELATARAAQAAGTIMILSSWATCSVEDIASAAPPGIRWFQLYVYKDRDITEQLVKRAEKAGFKALVLTVDTPRL 160 (363)
T ss_pred ccCCcccHHHHHHHHhcCCcEEEechhcCCHHHHHhhCCCCcEEEEEEecCchHHHHHHHHHHHHcCceEEEEEeccccc
Confidence 999999999999999999999999999999999999886 8899999999999999999999999999999999999999
Q ss_pred CchhHHhhhhcCCCCccccccccccccCccccccchhhHHHhhhccCccccHH---HHHhhcCCCEEEEecCCHHHHHHH
Q 017718 163 GRREADIKNRFTLPPFLTLKNFQGLDLGKMDEANDSGLAAYVAGQIDRSLSWK---WLQTITKLPILVKGVLTAEDARIA 239 (367)
Q Consensus 163 g~r~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~---~l~~~~~~Pv~vK~v~~~~~a~~~ 239 (367)
|+|+.|++|+|.+|+.++.+|+.+.......+...++...++..++|++++|+ |+++.|++||++|++++.|||+.|
T Consensus 161 G~R~~D~~n~f~lp~~l~lknfe~~~~~~v~~~~~sg~~~~~~~~id~Sl~W~Di~wLr~~T~LPIvvKGilt~eDA~~A 240 (363)
T KOG0538|consen 161 GRRESDIKNKFSLPKNLTLKNFEGLKLTEVEEAGDSGLAAYVSSQIDPSLSWKDIKWLRSITKLPIVVKGVLTGEDARKA 240 (363)
T ss_pred cCchhhhhhcccCCcccccccccccccccCCcccchhhhhhhhcCCCCCCChhhhHHHHhcCcCCeEEEeecccHHHHHH
Confidence 99999999999999999999987765554444456778889999999999996 999999999999999999999999
Q ss_pred HHcCCcEEEEcCCCCCCCCCccchHHHHHHHHHHhcCCCcEEEecCCCCHHHHHHHHHcCCCEEEechHHHHHhhccChH
Q 017718 240 VQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFIGRPVVYSLAAEGEK 319 (367)
Q Consensus 240 ~~~G~d~i~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~~~via~GGI~~~~dv~kal~lGAd~V~ig~~~l~~l~~~G~~ 319 (367)
.++|++||+||||||||+|..++++++|+|+.+++.+++||+.|||||+|.||+|||+|||.+|.+|||++|+++++|+.
T Consensus 241 ve~G~~GIIVSNHGgRQlD~vpAtI~~L~Evv~aV~~ri~V~lDGGVR~G~DVlKALALGAk~VfiGRP~v~gLA~~Ge~ 320 (363)
T KOG0538|consen 241 VEAGVAGIIVSNHGGRQLDYVPATIEALPEVVKAVEGRIPVFLDGGVRRGTDVLKALALGAKGVFIGRPIVWGLAAKGEA 320 (363)
T ss_pred HHhCCceEEEeCCCccccCcccchHHHHHHHHHHhcCceEEEEecCcccchHHHHHHhcccceEEecCchheeeccccch
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHhCCCChhhhcccceee
Q 017718 320 GVRRVLEMLREEFELAMALSGCRSLKEITRDHIVT 354 (367)
Q Consensus 320 ~v~~~i~~l~~el~~~m~~~G~~si~~l~~~~l~~ 354 (367)
||.++++.|++|++.+|.+.||+|+.|+++..+..
T Consensus 321 GV~~vl~iL~~efe~tmaLsGc~sv~ei~~~~v~~ 355 (363)
T KOG0538|consen 321 GVKKVLDILRDEFELTMALSGCRSVKEITRNHVLT 355 (363)
T ss_pred hHHHHHHHHHHHHHHHHHHhCCCchhhhCccceee
Confidence 99999999999999999999999999999986544
|
|
| >PLN02493 probable peroxisomal (S)-2-hydroxy-acid oxidase | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-83 Score=625.11 Aligned_cols=354 Identities=92% Similarity=1.363 Sum_probs=325.6
Q ss_pred CCCChHHHHHHHHHhCCccccccccCCCCchhhHHHhHhccccceeeccccCCCCCCccceeEcCeeeccceEeCcccch
Q 017718 3 EITNVMEYEAIAKEKLPKMVFDYYASGAEDQWTLQENRNAFSRILFRPRILIDVSKIDMNTTVLGFKISMPIMIAPTAMQ 82 (367)
Q Consensus 3 ~~~~~~d~~~~A~~~l~~~~~~y~~~ga~~~~t~~~n~~~~~~i~l~pr~l~~~~~vd~st~i~g~~l~~Pi~iAPm~~~ 82 (367)
.++|++|||+.||++||+.+|+|++||++||.|+++|+++|++|+|+||+|+|++++||+|++||+++++||++||++++
T Consensus 2 ~~~~i~D~e~~Ar~~lp~~~~~y~~gga~de~t~~~N~~af~r~~l~PRvLrdv~~~d~~t~~lG~~~~~Pi~iAP~g~~ 81 (367)
T PLN02493 2 EITNVTEYDAIAKQKLPKMVYDYYASGAEDQWTLQENRNAFARILFRPRILIDVSKIDMTTTVLGFKISMPIMVAPTAMQ 81 (367)
T ss_pred ccCCHHHHHHHHHHhCCHHHHHHHccCcchhHHHHHHHHHHHhCCeecccccCCCCCCCceEECCccccccceechHHHH
Confidence 36899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hccCChhhHHHHHHHHHcCCceeecCCCCCCHHHHHhhCCCceEEEEeecCCHHHHHHHHHHHHHcCCcEEEEecCCCCC
Q 017718 83 KMAHPEGEYATARAASAAGTIMTLSSWSTSSVEEVASTGPGIRFFQLYVYKDRNVVAQLVRRAERAGFKAIALTVDTPRL 162 (367)
Q Consensus 83 ~l~~~~~e~~~a~aa~~~G~~~~vs~~~~~~~e~i~~~~~~~~~~QLy~~~d~~~~~~~l~ra~~~G~~ai~itvd~p~~ 162 (367)
+++||++|.++||+|+++|++|++|+++++++|||.+..+++.|||||+.+|++.++++++||+++||++|++|||+|+.
T Consensus 82 ~l~hp~gE~a~AraA~~~gi~~~lSt~ss~slEeva~~~~~~~wfQlY~~~Dr~~~~~li~RA~~aG~~alvlTvD~p~~ 161 (367)
T PLN02493 82 KMAHPDGEYATARAASAAGTIMTLSSWATSSVEEVASTGPGIRFFQLYVYKNRNVVEQLVRRAERAGFKAIALTVDTPRL 161 (367)
T ss_pred hhcCCchHHHHHHHHHHcCCCeeecCcccCCHHHHHhcCCCCcEEEEeecCCHHHHHHHHHHHHHcCCCEEEEEcCCCCC
Confidence 99999999999999999999999999999999999987667899999999999999999999999999999999999999
Q ss_pred CchhHHhhhhcCCCCccccccccccccCccccccchhhHHHhhhccCccccHH---HHHhhcCCCEEEEecCCHHHHHHH
Q 017718 163 GRREADIKNRFTLPPFLTLKNFQGLDLGKMDEANDSGLAAYVAGQIDRSLSWK---WLQTITKLPILVKGVLTAEDARIA 239 (367)
Q Consensus 163 g~r~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~---~l~~~~~~Pv~vK~v~~~~~a~~~ 239 (367)
|+|++|+||+|.+|..+..+++..............+...++....++.++|+ |||+.|++||++|++.+.++|+++
T Consensus 162 G~R~~d~r~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~tW~di~wlr~~~~~PiivKgV~~~~dA~~a 241 (367)
T PLN02493 162 GRRESDIKNRFTLPPNLTLKNFEGLDLGKMDEANDSGLASYVAGQIDRTLSWKDVQWLQTITKLPILVKGVLTGEDARIA 241 (367)
T ss_pred CcchhhhcccCCCCcccchhhhhhccccCCCcccchhHHHHHhhcCCCCCCHHHHHHHHhccCCCEEeecCCCHHHHHHH
Confidence 99999999999988766655543211111111112234446666678889997 999999999999999999999999
Q ss_pred HHcCCcEEEEcCCCCCCCCCccchHHHHHHHHHHhcCCCcEEEecCCCCHHHHHHHHHcCCCEEEechHHHHHhhccChH
Q 017718 240 VQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFIGRPVVYSLAAEGEK 319 (367)
Q Consensus 240 ~~~G~d~i~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~~~via~GGI~~~~dv~kal~lGAd~V~ig~~~l~~l~~~G~~ 319 (367)
.++|+|+|+||||||+|+|+.++++++|+++++.+.+++|||+||||++|.|++|+|+|||++|++|||++|+++..|++
T Consensus 242 ~~~Gvd~I~VsnhGGrqld~~~~t~~~L~ei~~av~~~~~vi~dGGIr~G~Dv~KALALGA~aV~iGr~~l~~l~~~G~~ 321 (367)
T PLN02493 242 IQAGAAGIIVSNHGARQLDYVPATISALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFIGRPVVFSLAAEGEA 321 (367)
T ss_pred HHcCCCEEEECCCCCCCCCCchhHHHHHHHHHHHhCCCCeEEEeCCcCcHHHHHHHHHcCCCEEEEcHHHHHHHHhcCHH
Confidence 99999999999999999999999999999999988778999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHhCCCChhhhcccceeecc
Q 017718 320 GVRRVLEMLREEFELAMALSGCRSLKEITRDHIVTEW 356 (367)
Q Consensus 320 ~v~~~i~~l~~el~~~m~~~G~~si~~l~~~~l~~~~ 356 (367)
|+.++++.+++||+..|.++|++++.|+++..+....
T Consensus 322 gv~~~l~~l~~el~~~m~l~G~~~i~~l~~~~~~~~~ 358 (367)
T PLN02493 322 GVRKVLQMLRDEFELTMALSGCRSLKEISRNHITTEW 358 (367)
T ss_pred HHHHHHHHHHHHHHHHHHHhCCCCHHHhChhhhhHHH
Confidence 9999999999999999999999999999998876553
|
|
| >PLN02535 glycolate oxidase | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-80 Score=606.22 Aligned_cols=354 Identities=65% Similarity=1.023 Sum_probs=322.9
Q ss_pred CCCCChHHHHHHHHHhCCccccccccCCCCchhhHHHhHhccccceeeccccCCCCCCccceeEcCeeeccceEeCcccc
Q 017718 2 GEITNVMEYEAIAKEKLPKMVFDYYASGAEDQWTLQENRNAFSRILFRPRILIDVSKIDMNTTVLGFKISMPIMIAPTAM 81 (367)
Q Consensus 2 ~~~~~~~d~~~~A~~~l~~~~~~y~~~ga~~~~t~~~n~~~~~~i~l~pr~l~~~~~vd~st~i~g~~l~~Pi~iAPm~~ 81 (367)
++++|++|||+.||++||+.+|+|++||++||.|+++|+++|++|+|+||+|+|++++||+|++||+++++||+|||+|+
T Consensus 3 ~~~~~i~d~~~~A~~~lp~~~~~Y~~gga~~e~t~~~N~~af~~~~l~Pr~L~dv~~~d~~t~~lG~~~~~P~~iaP~g~ 82 (364)
T PLN02535 3 DEIVNVNEFQELAKQALPKMYYDFYAGGAEDQHTLKENVQAFRRITFRPRVLVDVSKIDMSTTILGYTISAPIMIAPTAM 82 (364)
T ss_pred cccCCHHHHHHHHHHhCCHHHHHHHhcCCcccHHHHHHHHHHHhCCeecccccCCCCCCCceEECCccccccceechHHH
Confidence 57899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhccCChhhHHHHHHHHHcCCceeecCCCCCCHHHHHhhCCCceEEEEeecCCHHHHHHHHHHHHHcCCcEEEEecCCCC
Q 017718 82 QKMAHPEGEYATARAASAAGTIMTLSSWSTSSVEEVASTGPGIRFFQLYVYKDRNVVAQLVRRAERAGFKAIALTVDTPR 161 (367)
Q Consensus 82 ~~l~~~~~e~~~a~aa~~~G~~~~vs~~~~~~~e~i~~~~~~~~~~QLy~~~d~~~~~~~l~ra~~~G~~ai~itvd~p~ 161 (367)
+++.||++|.+++|+|+++|+++++|+++++++|||.+..+++.|||||+.+|++.++++++||+++||++|++|+|+|+
T Consensus 83 ~~l~hp~gE~a~AraA~~~g~~~~lSt~s~~slEeva~~~~~~~wfQlY~~~dr~~~~~ll~RA~~aG~~alvlTvD~p~ 162 (364)
T PLN02535 83 HKLAHPEGEIATARAAAACNTIMVLSFMASCTVEEVASSCNAVRFLQLYVYKRRDIAAQLVQRAEKNGYKAIVLTADVPR 162 (364)
T ss_pred hcccCcchHHHHHHHHHHcCCCeEecCcccCCHHHHHhcCCCCeEEEEeccCCHHHHHHHHHHHHHcCCCEEEEeecCCC
Confidence 99999999999999999999999999999999999998766789999999999999999999999999999999999999
Q ss_pred CCchhHHhhhhcCCCCccccccccccccCccccccchhhHHHhhhccCccccHH---HHHhhcCCCEEEEecCCHHHHHH
Q 017718 162 LGRREADIKNRFTLPPFLTLKNFQGLDLGKMDEANDSGLAAYVAGQIDRSLSWK---WLQTITKLPILVKGVLTAEDARI 238 (367)
Q Consensus 162 ~g~r~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~---~l~~~~~~Pv~vK~v~~~~~a~~ 238 (367)
.|+|++|+||+|.+|. .+++..............+...+.....++.++|+ |+++.+++||++|++.+.++|+.
T Consensus 163 ~g~R~~d~r~~~~~p~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~tW~~i~~lr~~~~~PvivKgV~~~~dA~~ 239 (364)
T PLN02535 163 LGRREADIKNKMISPQ---LKNFEGLLSTEVVSDKGSGLEAFASETFDASLSWKDIEWLRSITNLPILIKGVLTREDAIK 239 (364)
T ss_pred CCCchhhhhcCCCCcc---hhhHhhhhccCCCccccccHHHHHHhccCCCCCHHHHHHHHhccCCCEEEecCCCHHHHHH
Confidence 9999999999998883 23322110000011112234456666678889997 89999999999999999999999
Q ss_pred HHHcCCcEEEEcCCCCCCCCCccchHHHHHHHHHHhcCCCcEEEecCCCCHHHHHHHHHcCCCEEEechHHHHHhhccCh
Q 017718 239 AVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFIGRPVVYSLAAEGE 318 (367)
Q Consensus 239 ~~~~G~d~i~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~~~via~GGI~~~~dv~kal~lGAd~V~ig~~~l~~l~~~G~ 318 (367)
+.++|+|+|+|+||||+++++++++++.|+++++.+..++|||++|||+++.|++|+|++||++|++|||++|++...|+
T Consensus 240 a~~~GvD~I~vsn~GGr~~d~~~~t~~~L~ev~~av~~~ipVi~dGGIr~g~Dv~KALalGA~aV~vGr~~l~~l~~~g~ 319 (364)
T PLN02535 240 AVEVGVAGIIVSNHGARQLDYSPATISVLEEVVQAVGGRVPVLLDGGVRRGTDVFKALALGAQAVLVGRPVIYGLAAKGE 319 (364)
T ss_pred HHhcCCCEEEEeCCCcCCCCCChHHHHHHHHHHHHHhcCCCEEeeCCCCCHHHHHHHHHcCCCEEEECHHHHhhhhhccH
Confidence 99999999999999999999999999999999988766899999999999999999999999999999999999988999
Q ss_pred HHHHHHHHHHHHHHHHHHHHhCCCChhhhcccceeeccCC
Q 017718 319 KGVRRVLEMLREEFELAMALSGCRSLKEITRDHIVTEWDA 358 (367)
Q Consensus 319 ~~v~~~i~~l~~el~~~m~~~G~~si~~l~~~~l~~~~~~ 358 (367)
+|+.+.++.+++||+.+|.++|+.++.|+++..+.....+
T Consensus 320 ~gv~~~l~~l~~el~~~m~l~G~~~i~el~~~~l~~~~~~ 359 (364)
T PLN02535 320 DGVRKVIEMLKDELEITMALSGCPSVKDITRSHVRTERER 359 (364)
T ss_pred HHHHHHHHHHHHHHHHHHHHhCCCCHHHhhhhhccchHhh
Confidence 9999999999999999999999999999999888654433
|
|
| >PRK11197 lldD L-lactate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-80 Score=607.47 Aligned_cols=351 Identities=38% Similarity=0.654 Sum_probs=318.3
Q ss_pred CCCChHHHHHHHHHhCCccccccccCCCCchhhHHHhHhccccceeeccccCCCCCCccceeEcCeeeccceEeCcccch
Q 017718 3 EITNVMEYEAIAKEKLPKMVFDYYASGAEDQWTLQENRNAFSRILFRPRILIDVSKIDMNTTVLGFKISMPIMIAPTAMQ 82 (367)
Q Consensus 3 ~~~~~~d~~~~A~~~l~~~~~~y~~~ga~~~~t~~~n~~~~~~i~l~pr~l~~~~~vd~st~i~g~~l~~Pi~iAPm~~~ 82 (367)
.++|++|||+.||++||+.+|+|++||++||.|+++|+++|++|+|+||+|+|++++||+|++||+++++||++||++++
T Consensus 2 ~~~~i~D~~~~Ar~~Lp~~~~~Y~~gga~de~t~~~N~~af~~~~l~PR~L~dv~~~d~~t~llG~~~~~Pi~iAP~g~~ 81 (381)
T PRK11197 2 IISAASDYRAAAQRRLPPFLFHYIDGGAYAEYTLRRNVEDLADIALRQRVLKDMSDLSLETTLFGEKLSMPVALAPVGLT 81 (381)
T ss_pred ccCCHHHHHHHHHHhCCHHHHHHHhcCcchHHHHHHHHHHHHhcceecccccCCCCCCCceEECCcccccchhhChHHHh
Confidence 46899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hccCChhhHHHHHHHHHcCCceeecCCCCCCHHHHHhhCCCceEEEEeecCCHHHHHHHHHHHHHcCCcEEEEecCCCCC
Q 017718 83 KMAHPEGEYATARAASAAGTIMTLSSWSTSSVEEVASTGPGIRFFQLYVYKDRNVVAQLVRRAERAGFKAIALTVDTPRL 162 (367)
Q Consensus 83 ~l~~~~~e~~~a~aa~~~G~~~~vs~~~~~~~e~i~~~~~~~~~~QLy~~~d~~~~~~~l~ra~~~G~~ai~itvd~p~~ 162 (367)
++.||++|.+++++|++.|++|++|++++.++|||.+..+++.|||||+++|++.++++++||+++||++|++|||+|+.
T Consensus 82 ~l~hp~gE~~~AraA~~~g~~~~lSt~ss~slEeia~~~~~~~wfQlY~~~Dr~~~~~li~RA~~aG~~alvlTVD~pv~ 161 (381)
T PRK11197 82 GMYARRGEVQAARAADAKGIPFTLSTVSVCPIEEVAPAIKRPMWFQLYVLRDRGFMRNALERAKAAGCSTLVFTVDMPVP 161 (381)
T ss_pred hccCCchHHHHHHHHHHcCCCEEeeCCCcCCHHHHHhccCCCeEEEEEecCCHHHHHHHHHHHHHcCCCEEEEecCCCCC
Confidence 99999999999999999999999999999999999987667899999999999999999999999999999999999999
Q ss_pred CchhHHhhhhcCCCCccccccccccc-----------------cCccc----c-ccchhhHHHhhhccCccccHH---HH
Q 017718 163 GRREADIKNRFTLPPFLTLKNFQGLD-----------------LGKMD----E-ANDSGLAAYVAGQIDRSLSWK---WL 217 (367)
Q Consensus 163 g~r~~~~~~~~~~p~~~~~~~~~~~~-----------------~~~~~----~-~~~~~~~~~~~~~~d~~~~~~---~l 217 (367)
|+|++|+||+|.+|+. +.+++.... ..... . ........++....+++++|+ ||
T Consensus 162 G~Rerd~rn~~~~p~~-~~~~~~~~~~~p~w~~~~~~~~~~~~~~n~~~~~~~~~g~~~~~~~~~~~~~~~ltW~di~~l 240 (381)
T PRK11197 162 GARYRDAHSGMSGPNA-AMRRYLQAVTHPQWAWDVGLNGRPHDLGNISAYLGKPTGLEDYIGWLGNNFDPSISWKDLEWI 240 (381)
T ss_pred CCChhhhhcCCCCCCc-hhhhHHhhhcCchhhhhhccccCCCcccccccccccccchhHHHHHHHhccCCCCCHHHHHHH
Confidence 9999999999988842 332211100 00000 0 001112334555678889997 99
Q ss_pred HhhcCCCEEEEecCCHHHHHHHHHcCCcEEEEcCCCCCCCCCccchHHHHHHHHHHhcCCCcEEEecCCCCHHHHHHHHH
Q 017718 218 QTITKLPILVKGVLTAEDARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALA 297 (367)
Q Consensus 218 ~~~~~~Pv~vK~v~~~~~a~~~~~~G~d~i~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~~~via~GGI~~~~dv~kal~ 297 (367)
++.|++||++|++++.++|+.+.++|+|+|+||||||++++..+++.+.|+++++.+.+++|||+||||+++.|++|+|+
T Consensus 241 r~~~~~pvivKgV~s~~dA~~a~~~Gvd~I~Vs~hGGr~~d~~~~t~~~L~~i~~a~~~~~~vi~dGGIr~g~Di~KALa 320 (381)
T PRK11197 241 RDFWDGPMVIKGILDPEDARDAVRFGADGIVVSNHGGRQLDGVLSSARALPAIADAVKGDITILADSGIRNGLDVVRMIA 320 (381)
T ss_pred HHhCCCCEEEEecCCHHHHHHHHhCCCCEEEECCCCCCCCCCcccHHHHHHHHHHHhcCCCeEEeeCCcCcHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999988766899999999999999999999
Q ss_pred cCCCEEEechHHHHHhhccChHHHHHHHHHHHHHHHHHHHHhCCCChhhhcccceee
Q 017718 298 LGASGIFIGRPVVYSLAAEGEKGVRRVLEMLREEFELAMALSGCRSLKEITRDHIVT 354 (367)
Q Consensus 298 lGAd~V~ig~~~l~~l~~~G~~~v~~~i~~l~~el~~~m~~~G~~si~~l~~~~l~~ 354 (367)
|||++|++||||+|+++..|++||.++++.|++||+..|.++|++++.||++..+..
T Consensus 321 LGA~~V~iGr~~l~~la~~G~~gv~~~l~~l~~El~~~m~l~G~~~i~el~~~~l~~ 377 (381)
T PRK11197 321 LGADTVLLGRAFVYALAAAGQAGVANLLDLIEKEMRVAMTLTGAKSISEITRDSLVQ 377 (381)
T ss_pred cCcCceeEhHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHCCCCHHHhCHhhhcc
Confidence 999999999999999999999999999999999999999999999999999887743
|
|
| >TIGR02708 L_lactate_ox L-lactate oxidase | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-79 Score=599.28 Aligned_cols=347 Identities=38% Similarity=0.596 Sum_probs=314.5
Q ss_pred CCCCChHHHHHHHHHhCCccccccccCCCCchhhHHHhHhccccceeeccccCCCCCCccceeEcCeeeccceEeCcccc
Q 017718 2 GEITNVMEYEAIAKEKLPKMVFDYYASGAEDQWTLQENRNAFSRILFRPRILIDVSKIDMNTTVLGFKISMPIMIAPTAM 81 (367)
Q Consensus 2 ~~~~~~~d~~~~A~~~l~~~~~~y~~~ga~~~~t~~~n~~~~~~i~l~pr~l~~~~~vd~st~i~g~~l~~Pi~iAPm~~ 81 (367)
.+++|++|||+.||++||+.+|+|++||++||.|+++|+++|++|+|+||+|+|++++||+|++||+++++||++|||++
T Consensus 11 ~~~~~i~D~~~~A~~~lp~~~~~y~~~ga~de~t~~~N~~af~~~~l~PR~L~dv~~~d~~t~llG~~~~~Pv~iaP~g~ 90 (367)
T TIGR02708 11 VDFINTYDLEEMAQQVIPKGAFGYIASGAGDTFTLRENIRAFNHKLIVPHLLQDVENPSTEIEFLGHKLKSPFIMAPVAA 90 (367)
T ss_pred cCCCCHHHHHHHHHHhCCHHHHHHHhcCCchHHHHHHHHHHHHhcCeecccccCCCCCCCceeeCCcccccccccCcHHH
Confidence 35789999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhccCChhhHHHHHHHHHcCCceeecCCCCCCHHHHHhhC-CCceEEEEeecCCHHHHHHHHHHHHHcCCcEEEEecCCC
Q 017718 82 QKMAHPEGEYATARAASAAGTIMTLSSWSTSSVEEVASTG-PGIRFFQLYVYKDRNVVAQLVRRAERAGFKAIALTVDTP 160 (367)
Q Consensus 82 ~~l~~~~~e~~~a~aa~~~G~~~~vs~~~~~~~e~i~~~~-~~~~~~QLy~~~d~~~~~~~l~ra~~~G~~ai~itvd~p 160 (367)
+++.||++|.+++++|.++|++|++|+++++++|||.+.. +++.|||||+.+|+++++++++||+++|+++|++|||+|
T Consensus 91 ~~l~~p~gE~~~ArAA~~~g~~~~lSt~ss~slEev~~~~~~~~~wfQlY~~~dr~~~~~li~RA~~aG~~alvlTvD~p 170 (367)
T TIGR02708 91 HKLANEQGEVATARGVSEFGSIYTTSSYSTADLPEISEALNGTPHWFQFYMSKDDGINRDIMDRVKADGAKAIVLTADAT 170 (367)
T ss_pred hhccCCcHHHHHHHHHHHcCCCeeecccccCCHHHHHhhcCCCceEEEEeccCCHHHHHHHHHHHHHcCCCEEEEecCCC
Confidence 9999999999999999999999999999999999999874 478999999999999999999999999999999999999
Q ss_pred CCCchhHHhhhhcCCCCccccccccccccCccccccchhhHHHhhhccCccccHH---HHHhhcCCCEEEEecCCHHHHH
Q 017718 161 RLGRREADIKNRFTLPPFLTLKNFQGLDLGKMDEANDSGLAAYVAGQIDRSLSWK---WLQTITKLPILVKGVLTAEDAR 237 (367)
Q Consensus 161 ~~g~r~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~---~l~~~~~~Pv~vK~v~~~~~a~ 237 (367)
+.|+|++|+||+|.+|......+ ...... .... ...+....++.++|+ |+++.+++||++|++.+.++|+
T Consensus 171 ~~g~R~~d~r~~~~~p~~~~~~~-~~~~~~-----~~~~-~~~~~~~~~~~~~w~~i~~l~~~~~~PvivKGv~~~eda~ 243 (367)
T TIGR02708 171 VGGNREVDVRNGFVFPVGMPIVQ-EYLPTG-----AGKS-MDNVYKSAKQKLSPRDIEEIAGYSGLPVYVKGPQCPEDAD 243 (367)
T ss_pred CCCcchhhhhcCCCCCCccchhh-hhcccC-----Cccc-hhhhccccCCCCCHHHHHHHHHhcCCCEEEeCCCCHHHHH
Confidence 99999999999998885332111 000000 0000 001122235678897 8999999999999999999999
Q ss_pred HHHHcCCcEEEEcCCCCCCCCCccchHHHHHHHHHHhcCCCcEEEecCCCCHHHHHHHHHcCCCEEEechHHHHHhhccC
Q 017718 238 IAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFIGRPVVYSLAAEG 317 (367)
Q Consensus 238 ~~~~~G~d~i~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~~~via~GGI~~~~dv~kal~lGAd~V~ig~~~l~~l~~~G 317 (367)
++.++|+|+|+||||||+|++.++++++.|+++++++++++|||+||||+++.|++|+|++|||+|++|||++|+++..|
T Consensus 244 ~a~~~Gvd~I~VS~HGGrq~~~~~a~~~~L~ei~~av~~~i~vi~dGGIr~g~Dv~KaLalGAd~V~igR~~l~~la~~G 323 (367)
T TIGR02708 244 RALKAGASGIWVTNHGGRQLDGGPAAFDSLQEVAEAVDKRVPIVFDSGVRRGQHVFKALASGADLVALGRPVIYGLALGG 323 (367)
T ss_pred HHHHcCcCEEEECCcCccCCCCCCcHHHHHHHHHHHhCCCCcEEeeCCcCCHHHHHHHHHcCCCEEEEcHHHHHHHHhcC
Confidence 99999999999999999999999999999999999887789999999999999999999999999999999999999999
Q ss_pred hHHHHHHHHHHHHHHHHHHHHhCCCChhhhcccceeec
Q 017718 318 EKGVRRVLEMLREEFELAMALSGCRSLKEITRDHIVTE 355 (367)
Q Consensus 318 ~~~v~~~i~~l~~el~~~m~~~G~~si~~l~~~~l~~~ 355 (367)
++|+.++++.|++||+..|.++|++++.||++..+...
T Consensus 324 ~~gv~~~l~~l~~El~~~M~l~G~~~i~eL~~~~l~~~ 361 (367)
T TIGR02708 324 SQGARQVFEYLNKELKRVMQLTGTQTIEDVKGFDLRHN 361 (367)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhCCCCHHHhCccccccC
Confidence 99999999999999999999999999999999887443
|
Members of this protein oxidize L-lactate to pyruvate, reducing molecular oxygen to hydrogen peroxide. The enzyme is known in Aerococcus viridans, Streptococcus iniae, and some strains of Streptococcus pyogenes where it appears to contribute to virulence. |
| >cd04736 MDH_FMN Mandelate dehydrogenase (MDH)-like FMN-binding domain | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-79 Score=597.17 Aligned_cols=339 Identities=44% Similarity=0.704 Sum_probs=309.9
Q ss_pred HHHHHHHHHhCCccccccccCCCCchhhHHHhHhccccceeeccccCCCCCCccceeEcCeeeccceEeCcccchhccCC
Q 017718 8 MEYEAIAKEKLPKMVFDYYASGAEDQWTLQENRNAFSRILFRPRILIDVSKIDMNTTVLGFKISMPIMIAPTAMQKMAHP 87 (367)
Q Consensus 8 ~d~~~~A~~~l~~~~~~y~~~ga~~~~t~~~n~~~~~~i~l~pr~l~~~~~vd~st~i~g~~l~~Pi~iAPm~~~~l~~~ 87 (367)
+|||+.||++||+.+|+|++||++||.|+++|+++|++|+|+||+|+|++++||+|++||+++++||+|||+++++++||
T Consensus 1 ~D~~~~Ar~~lp~~~~~Y~~~ga~de~t~~~N~~af~~~~l~PRvLr~v~~~d~~ttllG~~~~~P~~iaP~g~~~l~hp 80 (361)
T cd04736 1 EDYRSLAKKRLPRMVFDYLEGGAEDEKGLRHNRDAFDRWRFIPRRLVDVSKRDISASLFGKVWSAPLVIAPTGLNGAFWP 80 (361)
T ss_pred ChHHHHHHHhCCHHHHHHHccCcchHHHHHHHHHHHHHcCccccccCCCCCCCCceeECCccccccccccHHHHHhccCC
Confidence 58999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhHHHHHHHHHcCCceeecCCCCCCHHHHHhhCCCceEEEEeecCCHHHHHHHHHHHHHcCCcEEEEecCCCCCCchhH
Q 017718 88 EGEYATARAASAAGTIMTLSSWSTSSVEEVASTGPGIRFFQLYVYKDRNVVAQLVRRAERAGFKAIALTVDTPRLGRREA 167 (367)
Q Consensus 88 ~~e~~~a~aa~~~G~~~~vs~~~~~~~e~i~~~~~~~~~~QLy~~~d~~~~~~~l~ra~~~G~~ai~itvd~p~~g~r~~ 167 (367)
+||.+++|+|++.|++|++|+++++++|||.+..+++.|||||+. |+++++++++||+++||++|++|||+|+.|+|++
T Consensus 81 ~gE~a~AraA~~~g~~~~lSt~ss~siEeva~a~~~~~wfQLY~~-~r~~~~~ll~RA~~aG~~alvlTvD~pv~g~R~~ 159 (361)
T cd04736 81 NGDLALARAAAKAGIPFVLSTASNMSIEDVARQADGDLWFQLYVV-HRELAELLVKRALAAGYTTLVLTTDVAVNGYRER 159 (361)
T ss_pred cHHHHHHHHHHHcCCcEEeeCCCCCCHHHHHhhcCCCeEEEEEec-CHHHHHHHHHHHHHcCCCEEEEecCCCCCCCchh
Confidence 999999999999999999999999999999987767899999986 6999999999999999999999999999999999
Q ss_pred HhhhhcCCCCccccccccccccC----------------ccc---cccchhhHHHhhhccCccccHH---HHHhhcCCCE
Q 017718 168 DIKNRFTLPPFLTLKNFQGLDLG----------------KMD---EANDSGLAAYVAGQIDRSLSWK---WLQTITKLPI 225 (367)
Q Consensus 168 ~~~~~~~~p~~~~~~~~~~~~~~----------------~~~---~~~~~~~~~~~~~~~d~~~~~~---~l~~~~~~Pv 225 (367)
|+||+|.+|++++.+++.+.... ... .........++..+.|+.++|+ ||++.++.|+
T Consensus 160 d~r~~~~~p~~~~~~~~~~~~~~p~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~w~~i~~ir~~~~~pv 239 (361)
T cd04736 160 DLRNGFAIPFRYTPRVLLDGILHPRWLLRFLRNGMPQLANFASDDAIDVEVQAALMSRQMDASFNWQDLRWLRDLWPHKL 239 (361)
T ss_pred hhhcCCCCCcccchhhhhhhccCchhhhhhcccccccccccccccccchhhHHHHHHhccCCcCCHHHHHHHHHhCCCCE
Confidence 99999998877665553211100 000 0011123445555678889996 9999999999
Q ss_pred EEEecCCHHHHHHHHHcCCcEEEEcCCCCCCCCCccchHHHHHHHHHHhcCCCcEEEecCCCCHHHHHHHHHcCCCEEEe
Q 017718 226 LVKGVLTAEDARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFI 305 (367)
Q Consensus 226 ~vK~v~~~~~a~~~~~~G~d~i~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~~~via~GGI~~~~dv~kal~lGAd~V~i 305 (367)
++|++++.++|+.+.++|+|+|+||||||+|++..+++++.|+++++.+ ++|||++|||+++.||+|+|++||++|++
T Consensus 240 iiKgV~~~eda~~a~~~G~d~I~VSnhGGrqld~~~~~~~~L~ei~~~~--~~~vi~dGGIr~g~Dv~KALaLGA~aV~i 317 (361)
T cd04736 240 LVKGIVTAEDAKRCIELGADGVILSNHGGRQLDDAIAPIEALAEIVAAT--YKPVLIDSGIRRGSDIVKALALGANAVLL 317 (361)
T ss_pred EEecCCCHHHHHHHHHCCcCEEEECCCCcCCCcCCccHHHHHHHHHHHh--CCeEEEeCCCCCHHHHHHHHHcCCCEEEE
Confidence 9999999999999999999999999999999999999999999999887 59999999999999999999999999999
Q ss_pred chHHHHHhhccChHHHHHHHHHHHHHHHHHHHHhCCCChhhhcc
Q 017718 306 GRPVVYSLAAEGEKGVRRVLEMLREEFELAMALSGCRSLKEITR 349 (367)
Q Consensus 306 g~~~l~~l~~~G~~~v~~~i~~l~~el~~~m~~~G~~si~~l~~ 349 (367)
|||++|+++..|++||+++++.|++||+..|.++|++++.|+++
T Consensus 318 Gr~~l~~la~~G~~gv~~~l~~l~~el~~~m~l~G~~~i~~l~~ 361 (361)
T cd04736 318 GRATLYGLAARGEAGVSEVLRLLKEEIDRTLALIGCPDIASLTP 361 (361)
T ss_pred CHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHhCCCCHHHcCc
Confidence 99999999889999999999999999999999999999999863
|
MDH is part of a widespread family of homologous FMN-dependent a-hydroxy acid oxidizing enzymes that oxidizes (S)-mandelate to phenylglyoxalate. MDH is an enzyme in the mandelate pathway that occurs in several strains of Pseudomonas which converts (R)-mandelate to benzoate. This family occurs in both prokaryotes and eukaryotes. Members of this family include flavocytochrome b2 (FCB2), glycolate oxidase (GOX), lactate monooxygenase (LMO), mandelate dehydrogenase (MDH), and long chain hydroxyacid oxidase (LCHAO). |
| >cd03332 LMO_FMN L-Lactate 2-monooxygenase (LMO) FMN-binding domain | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-78 Score=595.52 Aligned_cols=348 Identities=42% Similarity=0.670 Sum_probs=312.4
Q ss_pred CCChHHHHHHHHHhCCccccccccCCCCchhhHHHhHhccccceeeccccCCCCCCccceeEcCeeeccceEeCcccchh
Q 017718 4 ITNVMEYEAIAKEKLPKMVFDYYASGAEDQWTLQENRNAFSRILFRPRILIDVSKIDMNTTVLGFKISMPIMIAPTAMQK 83 (367)
Q Consensus 4 ~~~~~d~~~~A~~~l~~~~~~y~~~ga~~~~t~~~n~~~~~~i~l~pr~l~~~~~vd~st~i~g~~l~~Pi~iAPm~~~~ 83 (367)
++|++|||+.||++||+.+|+|+.||++||.|+++|+++|++|+|+||+|+|++++||+|+|||+++++||+|||+++++
T Consensus 18 ~~~i~D~~~~Ar~~lp~~~~~y~~gGa~de~t~~~N~~af~~~~l~PRvL~dv~~~dt~t~llG~~~~~P~~iAP~g~~~ 97 (383)
T cd03332 18 PVDPERLEALAREALSPGAFAYVAGGAGSESTARANRDAFSRWRIVPRMLRGVTERDLSVELFGRTLAAPLLLAPIGVQE 97 (383)
T ss_pred cCCHHHHHHHHHHhCCHHHHHHhccCcchHHHHHHHHHHHHhcCccccccccCCCCCCceeeCCccccccceechHHHHH
Confidence 67999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccCChhhHHHHHHHHHcCCceeecCCCCCCHHHHHhhCC-CceEEEEeecCCHHHHHHHHHHHHHcCCcEEEEecCCCCC
Q 017718 84 MAHPEGEYATARAASAAGTIMTLSSWSTSSVEEVASTGP-GIRFFQLYVYKDRNVVAQLVRRAERAGFKAIALTVDTPRL 162 (367)
Q Consensus 84 l~~~~~e~~~a~aa~~~G~~~~vs~~~~~~~e~i~~~~~-~~~~~QLy~~~d~~~~~~~l~ra~~~G~~ai~itvd~p~~ 162 (367)
+.||++|.+++++|.+.|+++++|+++++++|||.+..+ ++.|||||+.+|++.++++++||+++||++|++|||+|+.
T Consensus 98 l~~p~gE~a~ArAA~~~gi~~~lSt~ss~slEeIa~~~~~~~~wfQlY~~~dr~~~~~ll~RA~~aG~~alvlTVD~pv~ 177 (383)
T cd03332 98 LFHPDAELATARAAAELGVPYILSTASSSSIEDVAAAAGDAPRWFQLYWPKDDDLTESLLRRAEKAGYRVLVVTLDTWSL 177 (383)
T ss_pred hcCCcHHHHHHHHHHHcCCCeeecCCCCCCHHHHHhhcCCCCcEEEeeCCCCHHHHHHHHHHHHHcCCCEEEEeCCCCCC
Confidence 999999999999999999999999999999999998744 7899999999999999999999999999999999999999
Q ss_pred CchhHHhhhhcCCCCc--ccccccc-c------cccCccccc-----cchhhHHHhhhccCccccHH---HHHhhcCCCE
Q 017718 163 GRREADIKNRFTLPPF--LTLKNFQ-G------LDLGKMDEA-----NDSGLAAYVAGQIDRSLSWK---WLQTITKLPI 225 (367)
Q Consensus 163 g~r~~~~~~~~~~p~~--~~~~~~~-~------~~~~~~~~~-----~~~~~~~~~~~~~d~~~~~~---~l~~~~~~Pv 225 (367)
|+|++|+|++| .|.. .+..++. . ......... .............++.++|+ |+++.|++||
T Consensus 178 g~Rerd~r~~~-~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~tW~~i~~lr~~~~~pv 256 (383)
T cd03332 178 GWRPRDLDLGY-LPFLRGIGIANYFSDPVFRKKLAEPVGEDPEAPPPMEAAVARFVSVFSGPSLTWEDLAFLREWTDLPI 256 (383)
T ss_pred CCchhhhhcCC-CCCccccchhhhhccchhhhccccCCCCCcccccccchhHHHHHHhcCCCCCCHHHHHHHHHhcCCCE
Confidence 99999999998 3421 1111100 0 000000000 01122333344457888997 8999999999
Q ss_pred EEEecCCHHHHHHHHHcCCcEEEEcCCCCCCCCCccchHHHHHHHHHHhcCCCcEEEecCCCCHHHHHHHHHcCCCEEEe
Q 017718 226 LVKGVLTAEDARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFI 305 (367)
Q Consensus 226 ~vK~v~~~~~a~~~~~~G~d~i~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~~~via~GGI~~~~dv~kal~lGAd~V~i 305 (367)
++|++++.++|+.+.++|+|+|+|||||||+++++++++++|+++++.+++++|||++|||++|.|++|+|+||||+|++
T Consensus 257 ivKgV~~~~dA~~a~~~G~d~I~vsnhGGr~~d~~~~t~~~L~ei~~~~~~~~~vi~dGGIr~G~Dv~KALaLGA~~v~i 336 (383)
T cd03332 257 VLKGILHPDDARRAVEAGVDGVVVSNHGGRQVDGSIAALDALPEIVEAVGDRLTVLFDSGVRTGADIMKALALGAKAVLI 336 (383)
T ss_pred EEecCCCHHHHHHHHHCCCCEEEEcCCCCcCCCCCcCHHHHHHHHHHHhcCCCeEEEeCCcCcHHHHHHHHHcCCCEEEE
Confidence 99999999999999999999999999999999999999999999999887789999999999999999999999999999
Q ss_pred chHHHHHhhccChHHHHHHHHHHHHHHHHHHHHhCCCChhhhcccce
Q 017718 306 GRPVVYSLAAEGEKGVRRVLEMLREEFELAMALSGCRSLKEITRDHI 352 (367)
Q Consensus 306 g~~~l~~l~~~G~~~v~~~i~~l~~el~~~m~~~G~~si~~l~~~~l 352 (367)
||||+|+++..|++||+++++.+++||+..|.++|++++.||+++.+
T Consensus 337 Gr~~l~~l~~~G~~gv~~~l~~l~~El~~~m~l~G~~~i~~l~~~~~ 383 (383)
T cd03332 337 GRPYAYGLALGGEDGVEHVLRNLLAELDLTMGLAGIRSIAELTRDAL 383 (383)
T ss_pred cHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHCCCCHHHhCcccC
Confidence 99999999999999999999999999999999999999999988653
|
LMO is a FMN-containing enzyme that catalyzes the conversion of L-lactate and oxygen to acetate, carbon dioxide, and water. LMO is a member of the family of alpha-hydroxy acid oxidases. It is thought to be a homooctamer with two- and four- fold axes in the center of the octamer. |
| >cd04737 LOX_like_FMN L-Lactate oxidase (LOX) FMN-binding domain | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.5e-78 Score=586.98 Aligned_cols=344 Identities=42% Similarity=0.696 Sum_probs=313.0
Q ss_pred CCCChHHHHHHHHHhCCccccccccCCCCchhhHHHhHhccccceeeccccCCCCCCccceeEcCeeeccceEeCcccch
Q 017718 3 EITNVMEYEAIAKEKLPKMVFDYYASGAEDQWTLQENRNAFSRILFRPRILIDVSKIDMNTTVLGFKISMPIMIAPTAMQ 82 (367)
Q Consensus 3 ~~~~~~d~~~~A~~~l~~~~~~y~~~ga~~~~t~~~n~~~~~~i~l~pr~l~~~~~vd~st~i~g~~l~~Pi~iAPm~~~ 82 (367)
+++|++|||+.||++||+.+|+|++||++||.|+++|+++|++|+|+||+|+|++++||+|++||+++++||++|||+++
T Consensus 4 ~~~~i~d~~~~A~~~lp~~~~~y~~~ga~~e~t~~~N~~a~~~~~l~prvL~dv~~~d~~t~~lG~~~~~P~~iaP~g~~ 83 (351)
T cd04737 4 DIINLYDLEAEAKKVIPKGAFGYIAGGSEDEWTLRENTRAFNHKQIVPRVLQGVESPDTSTELLGIKLKTPIIMAPIAAH 83 (351)
T ss_pred ccCcHHHHHHHHHHhCCHHHHHHHhcCcchHHHHHHHHHHHHhcCeechhccCCCCCCCceEeCCccccchhhhHHHHHH
Confidence 46899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hccCChhhHHHHHHHHHcCCceeecCCCCCCHHHHHhhC-CCceEEEEeecCCHHHHHHHHHHHHHcCCcEEEEecCCCC
Q 017718 83 KMAHPEGEYATARAASAAGTIMTLSSWSTSSVEEVASTG-PGIRFFQLYVYKDRNVVAQLVRRAERAGFKAIALTVDTPR 161 (367)
Q Consensus 83 ~l~~~~~e~~~a~aa~~~G~~~~vs~~~~~~~e~i~~~~-~~~~~~QLy~~~d~~~~~~~l~ra~~~G~~ai~itvd~p~ 161 (367)
++.||++|.+++++|.++|+++++|+.+++++|||.+.. +++.|||||..+|++.++++++||+++|+++|++|+|+|+
T Consensus 84 ~l~~p~ge~a~AraA~~~gi~~~lSt~s~~s~Eei~~~~~~~~~wfQlY~~~d~~~~~~ll~rA~~aG~~alvlTvD~p~ 163 (351)
T cd04737 84 GLAHATGEVATARGMAEVGSLFSISTYSNTSLEEIAKASNGGPKWFQLYMSKDDGFNRSLLDRAKAAGAKAIILTADATV 163 (351)
T ss_pred HhcCCchHHHHHHHHHHcCCCEEecCCCCCCHHHHHHhcCCCCeEEEEeecCCHHHHHHHHHHHHHcCCCEEEEecCCCC
Confidence 999999999999999999999999999999999999876 4789999999999999999999999999999999999999
Q ss_pred CCchhHHhhhhcCCCCccccccccccccCccccccchhhHHHhhhccCccccHH---HHHhhcCCCEEEEecCCHHHHHH
Q 017718 162 LGRREADIKNRFTLPPFLTLKNFQGLDLGKMDEANDSGLAAYVAGQIDRSLSWK---WLQTITKLPILVKGVLTAEDARI 238 (367)
Q Consensus 162 ~g~r~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~---~l~~~~~~Pv~vK~v~~~~~a~~ 238 (367)
.|+|++|+|++|.+|.+....+..... .. .+... .......++.++|+ |+++.+++||++|++.++++|+.
T Consensus 164 ~g~R~~d~r~~~~~p~~~~~~~~~~~~--~~---~~~~~-~~~~~~~~~~~~~~~l~~lr~~~~~PvivKgv~~~~dA~~ 237 (351)
T cd04737 164 GGNREADIRNKFQFPFGMPNLNHFSEG--TG---KGKGI-SEIYAAAKQKLSPADIEFIAKISGLPVIVKGIQSPEDADV 237 (351)
T ss_pred CCcchHHHHhcCCCCcccchhhhhccc--cc---cCcch-hhhhhhccCCCCHHHHHHHHHHhCCcEEEecCCCHHHHHH
Confidence 999999999999888654432211100 00 00000 01122345677897 89999999999999999999999
Q ss_pred HHHcCCcEEEEcCCCCCCCCCccchHHHHHHHHHHhcCCCcEEEecCCCCHHHHHHHHHcCCCEEEechHHHHHhhccCh
Q 017718 239 AVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFIGRPVVYSLAAEGE 318 (367)
Q Consensus 239 ~~~~G~d~i~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~~~via~GGI~~~~dv~kal~lGAd~V~ig~~~l~~l~~~G~ 318 (367)
+.++|+|+|+||||||+++++++++++.|+++++++++++|||++|||+++.|++|+|++|||+|++|||++|+++..|+
T Consensus 238 a~~~G~d~I~vsnhGGr~ld~~~~~~~~l~~i~~a~~~~i~vi~dGGIr~g~Di~kaLalGA~~V~iGr~~l~~la~~G~ 317 (351)
T cd04737 238 AINAGADGIWVSNHGGRQLDGGPASFDSLPEIAEAVNHRVPIIFDSGVRRGEHVFKALASGADAVAVGRPVLYGLALGGA 317 (351)
T ss_pred HHHcCCCEEEEeCCCCccCCCCchHHHHHHHHHHHhCCCCeEEEECCCCCHHHHHHHHHcCCCEEEECHHHHHHHhhchH
Confidence 99999999999999999999999999999999988877899999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHhCCCChhhhcccce
Q 017718 319 KGVRRVLEMLREEFELAMALSGCRSLKEITRDHI 352 (367)
Q Consensus 319 ~~v~~~i~~l~~el~~~m~~~G~~si~~l~~~~l 352 (367)
+||.++++.+++||+.+|.++|+++++|+++..|
T Consensus 318 ~gv~~~l~~l~~El~~~m~l~G~~~i~el~~~~~ 351 (351)
T cd04737 318 QGVASVLEHLNKELKIVMQLAGTRTIEDVKRTFL 351 (351)
T ss_pred HHHHHHHHHHHHHHHHHHHHHCCCCHHHhCCCCC
Confidence 9999999999999999999999999999987653
|
LOX is a member of the family of FMN-containing alpha-hydroxyacid oxidases and catalyzes the oxidation of l-lactate using molecular oxygen to generate pyruvate and H2O2. This family occurs in both prokaryotes and eukaryotes. Members of this family include flavocytochrome b2 (FCB2), glycolate oxidase (GOX), lactate monooxygenase (LMO), mandelate dehydrogenase (MDH), and long chain hydroxyacid oxidase (LCHAO). |
| >PF01070 FMN_dh: FMN-dependent dehydrogenase; InterPro: IPR000262 A number of oxidoreductases that act on alpha-hydroxy acids and which are FMN-containing flavoproteins have been shown [, , ] to be structurally related | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.7e-76 Score=577.88 Aligned_cols=340 Identities=51% Similarity=0.778 Sum_probs=302.5
Q ss_pred HHHhCCccccccccCCCCchhhHHHhHhccccceeeccccCCCCCCccceeEcCeeeccceEeCcccchhccCChhhHHH
Q 017718 14 AKEKLPKMVFDYYASGAEDQWTLQENRNAFSRILFRPRILIDVSKIDMNTTVLGFKISMPIMIAPTAMQKMAHPEGEYAT 93 (367)
Q Consensus 14 A~~~l~~~~~~y~~~ga~~~~t~~~n~~~~~~i~l~pr~l~~~~~vd~st~i~g~~l~~Pi~iAPm~~~~l~~~~~e~~~ 93 (367)
||++||+..|+||+||+++|.|+++|+++|++|+|+||+|++++++||+|+|||+++++||++|||+++++.||++|.++
T Consensus 1 Ar~~lp~~~~~yi~gga~~e~t~~~N~~af~~i~l~prvL~dv~~~D~st~~lG~~~s~P~~iaP~~~~~l~~~~ge~~l 80 (356)
T PF01070_consen 1 ARRRLPPRVFDYIDGGAGDEVTFRRNREAFDRIRLRPRVLRDVSDPDTSTTFLGQKLSMPFFIAPMGGGGLAHPDGERAL 80 (356)
T ss_dssp HHHHS-HHHHHHHHHHSTTTHHHHHHHHGGGGEEE---SSSBGSS-BSSEEETTEEESSSEEEEEESTGGGTSTTHHHHH
T ss_pred CccccCHHHHHHHHHcCCCcHHHHHHHHHHHHhcccccccCCcccCCCCeeeCCccCCCCeEEcchhhhhhhccchHHHH
Confidence 89999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHcCCceeecCCCCCCHHHHHhhCCCceEEEEeecCCHHHHHHHHHHHHHcCCcEEEEecCCCCCCchhHHhhhhc
Q 017718 94 ARAASAAGTIMTLSSWSTSSVEEVASTGPGIRFFQLYVYKDRNVVAQLVRRAERAGFKAIALTVDTPRLGRREADIKNRF 173 (367)
Q Consensus 94 a~aa~~~G~~~~vs~~~~~~~e~i~~~~~~~~~~QLy~~~d~~~~~~~l~ra~~~G~~ai~itvd~p~~g~r~~~~~~~~ 173 (367)
+++|+++|+++++|++++.++|++.+..+++.|||||.+.|++.+.++++||+++|+++++||+|+|+.++|++|+|++|
T Consensus 81 AraA~~~Gi~~~lss~s~~~~e~ia~~~~~~~~~Qly~~~d~~~~~~~i~rAe~aG~~Al~vtvD~~~~~~R~~d~r~g~ 160 (356)
T PF01070_consen 81 ARAAAKAGIPMMLSSQSSASLEEIAAASGGPLWFQLYPPRDRELTRDLIRRAEAAGAKALVVTVDAPQEGNRERDLRNGF 160 (356)
T ss_dssp HHHHHHHTSEEEEETTCSSCHHHHHHHCTSEEEEEEEGBSSHHHHHHHHHHHHHTTCSEEEEETSHSSHHHBHHHHHHTC
T ss_pred HHHHhccCcceeccCCccCCHHHHHhhccCCeEEEEEEecCHHHHHHHHHHhhcCCCCEEEEECcCcccCCccccccccc
Confidence 99999999999999999999999998877899999999999999999999999999999999999999999999999999
Q ss_pred CCCCccccccccccccCcc-------------ccccchhhHHHhhhccCccccHH---HHHhhcCCCEEEEecCCHHHHH
Q 017718 174 TLPPFLTLKNFQGLDLGKM-------------DEANDSGLAAYVAGQIDRSLSWK---WLQTITKLPILVKGVLTAEDAR 237 (367)
Q Consensus 174 ~~p~~~~~~~~~~~~~~~~-------------~~~~~~~~~~~~~~~~d~~~~~~---~l~~~~~~Pv~vK~v~~~~~a~ 237 (367)
.+|++++.+++......+. .........++.....+++++|+ |+++.|++||++|++++.+||+
T Consensus 161 ~~p~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~i~~~~~~~~~pvivKgv~~~~da~ 240 (356)
T PF01070_consen 161 SVPPKLSPRNLLDGASHPRSGMPRLENNEAPPPGDNGAAAARFVGSQFDPSLTWDDIEWIRKQWKLPVIVKGVLSPEDAK 240 (356)
T ss_dssp CCSTTHCTTCGTTTTTTT-TTTGG-----CSSSSTSTCHHHHHHHCHB-TT-SHHHHHHHHHHCSSEEEEEEE-SHHHHH
T ss_pred CCCcccccccccccccCcccccccccccccccCCCcchhHHHHHHHhcCCCCCHHHHHHHhcccCCceEEEecccHHHHH
Confidence 9998877766643221110 00122334556667778889997 9999999999999999999999
Q ss_pred HHHHcCCcEEEEcCCCCCCCCCccchHHHHHHHHHHhcCCCcEEEecCCCCHHHHHHHHHcCCCEEEechHHHHHhhccC
Q 017718 238 IAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFIGRPVVYSLAAEG 317 (367)
Q Consensus 238 ~~~~~G~d~i~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~~~via~GGI~~~~dv~kal~lGAd~V~ig~~~l~~l~~~G 317 (367)
++.++|+|+|+||||||||+|+++++.+.|+++++.+++++|||+|||||+|.|++|+|+|||++|++|||++|++...|
T Consensus 241 ~~~~~G~~~i~vs~hGGr~~d~~~~~~~~L~~i~~~~~~~~~i~~dgGir~g~Dv~kalaLGA~~v~igr~~l~~l~~~g 320 (356)
T PF01070_consen 241 RAVDAGVDGIDVSNHGGRQLDWGPPTIDALPEIRAAVGDDIPIIADGGIRRGLDVAKALALGADAVGIGRPFLYALAAGG 320 (356)
T ss_dssp HHHHTT-SEEEEESGTGTSSTTS-BHHHHHHHHHHHHTTSSEEEEESS--SHHHHHHHHHTT-SEEEESHHHHHHHHHHH
T ss_pred HHHhcCCCEEEecCCCcccCccccccccccHHHHhhhcCCeeEEEeCCCCCHHHHHHHHHcCCCeEEEccHHHHHHHHhh
Confidence 99999999999999999999999999999999999887799999999999999999999999999999999999998899
Q ss_pred hHHHHHHHHHHHHHHHHHHHHhCCCChhhhccccee
Q 017718 318 EKGVRRVLEMLREEFELAMALSGCRSLKEITRDHIV 353 (367)
Q Consensus 318 ~~~v~~~i~~l~~el~~~m~~~G~~si~~l~~~~l~ 353 (367)
++||.++++.|++||+..|.++|++++.||+++.|.
T Consensus 321 ~~gv~~~~~~l~~el~~~m~l~G~~~~~~l~~~~~~ 356 (356)
T PF01070_consen 321 EEGVERVLEILKEELKRAMFLLGARSIAELRRSLLR 356 (356)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHT-SBGGGHTGGGEE
T ss_pred HHHHHHHHHHHHHHHHHHHHHHCCCCHHHhCHHhcC
Confidence 999999999999999999999999999999998763
|
These enzymes are: Lactate dehydrogenase (1.1.2.3 from EC), which consists of a dehydrogenase domain and a haem-binding domain called cytochrome b2 and which catalyses the conversion of lactate into pyruvate. Glycolate oxidase (1.1.3.15 from EC) ((S)-2-hydroxy-acid oxidase), a peroxisomal enzyme that catalyses the conversion of glycolate and oxygen to glyoxylate and hydrogen peroxide. Long chain alpha-hydroxy acid oxidase from rat (1.1.3.15 from EC), a peroxisomal enzyme. Lactate 2-monooxygenase (1.13.12.4 from EC) (lactate oxidase) from Mycobacterium smegmatis, which catalyses the conversion of lactate and oxygen to acetate, carbon dioxide and water. (S)-mandelate dehydrogenase from Pseudomonas putida (gene mdlB), which catalyses the reduction of (S)-mandelate to benzoylformate. The first step in the reaction mechanism of these enzymes is the abstraction of the proton from the alpha-carbon of the substrate producing a carbanion which can subsequently attach to the N5 atom of FMN. A conserved histidine has been shown [] to be involved in the removal of the proton. The region around this active site residue is highly conserved and contains an arginine residue which is involved in substrate binding.; GO: 0016491 oxidoreductase activity; PDB: 1VCG_C 1VCF_A 1P0N_B 1P0K_A 2A85_A 2A7P_A 3GIY_A 2A7N_A 3DH7_A 2RDU_A .... |
| >cd02922 FCB2_FMN Flavocytochrome b2 (FCB2) FMN-binding domain | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-74 Score=562.60 Aligned_cols=335 Identities=47% Similarity=0.748 Sum_probs=305.5
Q ss_pred HHHHHHHHHhCCccccccccCCCCchhhHHHhHhccccceeeccccCCCCCCccceeEcCeeeccceEeCcccchhccCC
Q 017718 8 MEYEAIAKEKLPKMVFDYYASGAEDQWTLQENRNAFSRILFRPRILIDVSKIDMNTTVLGFKISMPIMIAPTAMQKMAHP 87 (367)
Q Consensus 8 ~d~~~~A~~~l~~~~~~y~~~ga~~~~t~~~n~~~~~~i~l~pr~l~~~~~vd~st~i~g~~l~~Pi~iAPm~~~~l~~~ 87 (367)
+|||+.||++||+.+|+|++||++||.|+++|+++|++|+|+||+|+|++++||+|+|||+++++||+||||+++++.||
T Consensus 1 ~d~~~~A~~~lp~~~~~y~~~ga~~e~t~~~N~~af~~~~l~pr~L~dv~~~d~~~~~lG~~~~~Pi~iaP~~~~~~~~~ 80 (344)
T cd02922 1 HDFEAAAKKYLSKKAWAYYSSGADDEITLRENLEAFQRIRFRPRVLRDVEKVDTSTTILGHKVSLPFFISPAALAKLAHP 80 (344)
T ss_pred ChHHHHHHHhCCHHHHHHhccCcchHHHHHHHHHHHHhCceeccccCCCCCCCCceEECCcccCCceeeChHHHhhhCCc
Confidence 58999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhHHHHHHHHHcCCceeecCCCCCCHHHHHhh-CC-CceEEEEeecCCHHHHHHHHHHHHHcCCcEEEEecCCCCCCch
Q 017718 88 EGEYATARAASAAGTIMTLSSWSTSSVEEVAST-GP-GIRFFQLYVYKDRNVVAQLVRRAERAGFKAIALTVDTPRLGRR 165 (367)
Q Consensus 88 ~~e~~~a~aa~~~G~~~~vs~~~~~~~e~i~~~-~~-~~~~~QLy~~~d~~~~~~~l~ra~~~G~~ai~itvd~p~~g~r 165 (367)
++|.+++++|.++|++|++|++++.++|+|.+. .| .+.|||||.++|++.++++++||+++|+++|++|+|+|+.|+|
T Consensus 81 ~ge~~~AraA~~~gi~~~lss~s~~s~e~v~~~~~~~~~~w~Qly~~~d~~~~~~l~~ra~~ag~~alvltvD~p~~g~r 160 (344)
T cd02922 81 DGELNLARAAGKHGILQMISTNASCSLEEIVDARPPDQPLFFQLYVNKDRTKTEELLKRAEKLGAKAIFLTVDAPVLGKR 160 (344)
T ss_pred hHHHHHHHHHHHcCCCEEecCcccCCHHHHHHhcCCCCcEEEEEeecCCHHHHHHHHHHHHHcCCCEEEEECCCCCcCcc
Confidence 999999999999999999999999999998876 34 6899999999999999999999999999999999999999999
Q ss_pred hHHhhhhcCCCCccccccccccccCccccccchhhHHHhhhccCccccHH---HHHhhcCCCEEEEecCCHHHHHHHHHc
Q 017718 166 EADIKNRFTLPPFLTLKNFQGLDLGKMDEANDSGLAAYVAGQIDRSLSWK---WLQTITKLPILVKGVLTAEDARIAVQA 242 (367)
Q Consensus 166 ~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~---~l~~~~~~Pv~vK~v~~~~~a~~~~~~ 242 (367)
++|+||+|+.|.+++.++.... ....+...+.....++..+|+ |+++.+++||++|++.+.++|+.+.++
T Consensus 161 ~~d~r~~~~~p~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~PvivKgv~~~~dA~~a~~~ 233 (344)
T cd02922 161 ERDERLKAEEAVSDGPAGKKTK-------AKGGGAGRAMSGFIDPTLTWDDIKWLRKHTKLPIVLKGVQTVEDAVLAAEY 233 (344)
T ss_pred hhhhhhcCCcCccccccccccc-------cccchHHHHHhhccCCCCCHHHHHHHHHhcCCcEEEEcCCCHHHHHHHHHc
Confidence 9999999998865544331100 011112223333456677886 999999999999999999999999999
Q ss_pred CCcEEEEcCCCCCCCCCccchHHHHHHHHHHh---cCCCcEEEecCCCCHHHHHHHHHcCCCEEEechHHHHHhhccChH
Q 017718 243 GAAGIIVSNHGARQLDYVPATIMALEEVVKAT---QGRIPVFLDGGVRRGTDVFKALALGASGIFIGRPVVYSLAAEGEK 319 (367)
Q Consensus 243 G~d~i~vs~~gg~~~~~~~~~~~~l~~i~~~~---~~~~~via~GGI~~~~dv~kal~lGAd~V~ig~~~l~~l~~~G~~ 319 (367)
|+|+|+|+||||++++..+++++.|+++++.+ ++++|||++|||+++.|++|+|+|||++|+||||+++++.+.|++
T Consensus 234 G~d~I~vsnhgG~~~d~~~~~~~~L~~i~~~~~~~~~~~~vi~~GGIr~G~Dv~kalaLGA~aV~iG~~~l~~l~~~G~~ 313 (344)
T cd02922 234 GVDGIVLSNHGGRQLDTAPAPIEVLLEIRKHCPEVFDKIEVYVDGGVRRGTDVLKALCLGAKAVGLGRPFLYALSAYGEE 313 (344)
T ss_pred CCCEEEEECCCcccCCCCCCHHHHHHHHHHHHHHhCCCceEEEeCCCCCHHHHHHHHHcCCCEEEECHHHHHHHhhccHH
Confidence 99999999999999999899999999998753 457999999999999999999999999999999999999989999
Q ss_pred HHHHHHHHHHHHHHHHHHHhCCCChhhhcc
Q 017718 320 GVRRVLEMLREEFELAMALSGCRSLKEITR 349 (367)
Q Consensus 320 ~v~~~i~~l~~el~~~m~~~G~~si~~l~~ 349 (367)
||.++++.+++||+.+|.++|+++++||++
T Consensus 314 gv~~~l~~l~~EL~~~m~l~G~~~i~~l~~ 343 (344)
T cd02922 314 GVEKAIQILKDEIETTMRLLGVTSLDQLGP 343 (344)
T ss_pred HHHHHHHHHHHHHHHHHHHhCCCCHHHhCc
Confidence 999999999999999999999999999975
|
FCB2 (AKA L-lactate:cytochrome c oxidoreductase) is a respiratory enzyme located in the intermembrane space of fungal mitochondria which catalyzes the oxidation of L-lactate to pyruvate. FCB2 also participates in a short electron-transport chain involving cytochrome c and cytochrome oxidase which ultimately directs the reducing equivalents gained from L-lactate oxidation to oxygen, yielding one molecule of ATP for every L-lactate molecule consumed. FCB2 is composed of 2 domains: a C-terminal flavin-binding domain, which includes the active site for lacate oxidation, and an N-terminal b2-cytochrome domain, required for efficient cytochrome c reduction. FCB2 is a homotetramer and contains two noncovalently bound cofactors, FMN and heme per subunit. |
| >PLN02979 glycolate oxidase | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.9e-69 Score=522.39 Aligned_cols=313 Identities=92% Similarity=1.343 Sum_probs=284.8
Q ss_pred cceeeccccCCCCCCccceeEcCeeeccceEeCcccchhccCChhhHHHHHHHHHcCCceeecCCCCCCHHHHHhhCCCc
Q 017718 45 RILFRPRILIDVSKIDMNTTVLGFKISMPIMIAPTAMQKMAHPEGEYATARAASAAGTIMTLSSWSTSSVEEVASTGPGI 124 (367)
Q Consensus 45 ~i~l~pr~l~~~~~vd~st~i~g~~l~~Pi~iAPm~~~~l~~~~~e~~~a~aa~~~G~~~~vs~~~~~~~e~i~~~~~~~ 124 (367)
-|+|+||+|+|++++||+|++||+++++||++||++++++.||++|.+++|+|+++|+++++|++++.++|||.+..+.+
T Consensus 43 ~~~lrPRvLrdv~~~dtst~llG~~~~~P~~iAP~g~~~l~hpdgE~a~ARAA~~agi~~~lSt~ss~slEeIa~a~~~~ 122 (366)
T PLN02979 43 FCDFRPRILIDVSKIDMTTTVLGFKISMPIMVAPTAMQKMAHPDGEYATARAASAAGTIMTLSSWATSSVEEVASTGPGI 122 (366)
T ss_pred eeEEECccccCCCCCCCceEECCcccCccceecHHHHHhhCCCChHHHHHHHHHHcCCCeeeccCcCCCHHHHHhccCCC
Confidence 38999999999999999999999999999999999999999999999999999999999999999999999999876678
Q ss_pred eEEEEeecCCHHHHHHHHHHHHHcCCcEEEEecCCCCCCchhHHhhhhcCCCCccccccccccccCccccccchhhHHHh
Q 017718 125 RFFQLYVYKDRNVVAQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLTLKNFQGLDLGKMDEANDSGLAAYV 204 (367)
Q Consensus 125 ~~~QLy~~~d~~~~~~~l~ra~~~G~~ai~itvd~p~~g~r~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 204 (367)
.|||||+.+|++.++++++||+++||+++++|||+|+.|+|++|+||+|.+|+.++.+++..............+..+++
T Consensus 123 ~wfQLY~~~Dr~~~~~ll~RA~~aG~~AlvlTVD~pv~G~R~rd~rn~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 202 (366)
T PLN02979 123 RFFQLYVYKNRNVVEQLVRRAERAGFKAIALTVDTPRLGRRESDIKNRFTLPPNLTLKNFEGLDLGKMDEANDSGLASYV 202 (366)
T ss_pred eEEEEeecCCHHHHHHHHHHHHHcCCCEEEEEecCCCCCCchhhhccCCCCCcccchhhhhhccccCCCcccchhHHHHH
Confidence 99999999999999999999999999999999999999999999999999987666666432211111111222344566
Q ss_pred hhccCccccHH---HHHhhcCCCEEEEecCCHHHHHHHHHcCCcEEEEcCCCCCCCCCccchHHHHHHHHHHhcCCCcEE
Q 017718 205 AGQIDRSLSWK---WLQTITKLPILVKGVLTAEDARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVF 281 (367)
Q Consensus 205 ~~~~d~~~~~~---~l~~~~~~Pv~vK~v~~~~~a~~~~~~G~d~i~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~~~vi 281 (367)
....++.++|+ |||+.|++||++|++.+.++|+++.++|+|+|+||||||+++++.+++.++|+++++.+.+++|||
T Consensus 203 ~~~~~~~ltW~dl~wlr~~~~~PvivKgV~~~~dA~~a~~~Gvd~I~VsnhGGrqld~~p~t~~~L~ei~~~~~~~~~Vi 282 (366)
T PLN02979 203 AGQIDRTLSWKDVQWLQTITKLPILVKGVLTGEDARIAIQAGAAGIIVSNHGARQLDYVPATISALEEVVKATQGRIPVF 282 (366)
T ss_pred hhcCCCCCCHHHHHHHHhccCCCEEeecCCCHHHHHHHHhcCCCEEEECCCCcCCCCCchhHHHHHHHHHHHhCCCCeEE
Confidence 66678889997 999999999999999999999999999999999999999999999999999999998887789999
Q ss_pred EecCCCCHHHHHHHHHcCCCEEEechHHHHHhhccChHHHHHHHHHHHHHHHHHHHHhCCCChhhhcccceeeccC
Q 017718 282 LDGGVRRGTDVFKALALGASGIFIGRPVVYSLAAEGEKGVRRVLEMLREEFELAMALSGCRSLKEITRDHIVTEWD 357 (367)
Q Consensus 282 a~GGI~~~~dv~kal~lGAd~V~ig~~~l~~l~~~G~~~v~~~i~~l~~el~~~m~~~G~~si~~l~~~~l~~~~~ 357 (367)
+||||++|.|++|+|+||||+|++|||++|+++..|++|+.++++.+++||+..|.++|++++.|+.+..+.....
T Consensus 283 ~dGGIr~G~Di~KALALGAdaV~iGrp~L~~la~~G~~Gv~~~l~~l~~El~~~m~l~G~~~i~el~~~~~~~~~~ 358 (366)
T PLN02979 283 LDGGVRRGTDVFKALALGASGIFIGRPVVFSLAAEGEAGVRKVLQMLRDEFELTMALSGCRSLKEISRNHITTEWD 358 (366)
T ss_pred EeCCcCcHHHHHHHHHcCCCEEEEcHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHhCCCCHHHhChhhhhHHHh
Confidence 9999999999999999999999999999999999999999999999999999999999999999999988865543
|
|
| >COG1304 idi Isopentenyl diphosphate isomerase (BS_ypgA, MTH48 and related proteins) [Coenzyme transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.3e-64 Score=489.78 Aligned_cols=346 Identities=44% Similarity=0.635 Sum_probs=317.3
Q ss_pred hHHHHHHHHHhCCccccccccCCCCchhhHHHhHhccccceeeccccCCCCCCccceeEcCeeeccceEeCcccchhccC
Q 017718 7 VMEYEAIAKEKLPKMVFDYYASGAEDQWTLQENRNAFSRILFRPRILIDVSKIDMNTTVLGFKISMPIMIAPTAMQKMAH 86 (367)
Q Consensus 7 ~~d~~~~A~~~l~~~~~~y~~~ga~~~~t~~~n~~~~~~i~l~pr~l~~~~~vd~st~i~g~~l~~Pi~iAPm~~~~l~~ 86 (367)
+.|+++.|+.++| +.|.|+.+|+++|.|+++|+++|++|.|+||+|++++++|++|++||+++++||+||||+++++.|
T Consensus 1 ~~~~~~~a~~~~~-~~~hy~~~~~~~e~t~~~n~~~f~~i~l~~~~L~~v~~idlst~~~G~~l~~Pi~iapmt~g~~~~ 79 (360)
T COG1304 1 VADLRRAAQRRLP-KAFHYIDGGAEDEVTLRRNREAFEDIALRPRVLPEVDDIDLSTTFLGQKLSAPIIIAPMTGGGLAH 79 (360)
T ss_pred CcchHHHHhhhcc-hHhHHHHhhccccccHhhhhhhhhhheeecccCCCcccCccceEecCccccCCEEEeccccccccC
Confidence 4689999999999 999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ChhhHHHHHHHHHcCCceeecCCCCCCHHHHHhhCCCceEEEEeecCCHHHHHHHHHHHHHcCCcEEEEecCCCCCCchh
Q 017718 87 PEGEYATARAASAAGTIMTLSSWSTSSVEEVASTGPGIRFFQLYVYKDRNVVAQLVRRAERAGFKAIALTVDTPRLGRRE 166 (367)
Q Consensus 87 ~~~e~~~a~aa~~~G~~~~vs~~~~~~~e~i~~~~~~~~~~QLy~~~d~~~~~~~l~ra~~~G~~ai~itvd~p~~g~r~ 166 (367)
++++...+++|..+|.+++.++++++++|++.+..+ ||+|+..|++...++++++.++|++.+++|+|.|+.++|+
T Consensus 80 ~~ge~~~a~~A~~a~~~~i~s~~gs~~ie~~~~~~~----~q~y~~~~R~~~~~~~~~a~n~G~~~lv~t~d~~~~~~r~ 155 (360)
T COG1304 80 PEGEVINAKLAAAAGEPFILSTVGSQRIEEVAAAPP----FQLYFSKDREFAPNLVDRAANAGAKQLVLTVDSPVGGERE 155 (360)
T ss_pred hhhHHHHHHHHHHcCCCeeeeccccCcHHHhhcCcc----hhhhhHHHHHhhHHHHHHHHhcCCcceeeccCccchHHHH
Confidence 999999999999999999999999999999876644 9999889999999999999999999999999999999999
Q ss_pred HHhhhhcCCCCccccccccccccCccc----cccchhhHHHhhhccCccccHH---HHHhhcCCCEEEEecCCHHHHHHH
Q 017718 167 ADIKNRFTLPPFLTLKNFQGLDLGKMD----EANDSGLAAYVAGQIDRSLSWK---WLQTITKLPILVKGVLTAEDARIA 239 (367)
Q Consensus 167 ~~~~~~~~~p~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~d~~~~~~---~l~~~~~~Pv~vK~v~~~~~a~~~ 239 (367)
+|.++++..|+.....|.......+-. ......+.++.....+|.++|+ |+++.|..|+++|++.+++|+..+
T Consensus 156 ~d~~~~i~a~~~~~h~n~~qe~~~p~g~~~~~~~~~~i~~~~~~~~~P~i~ked~~~i~~~~~~~lv~kGV~~~~D~~~a 235 (360)
T COG1304 156 RDAVNGISAPALAIHLNVLQEATQPEGDRDGKGGLDSIAEYVSALSVPVISKEDGAGISKEWAGPLVLKGILAPEDAAGA 235 (360)
T ss_pred HHHHhccCCCcccccccHHHHhcCCcccccccchhhHHHHHHHhcCCCcccHHHHhHHHHhcCCcHHHhCCCCHHHHHhh
Confidence 999999988876666665432211100 1111134566667778888997 999999999999999999999999
Q ss_pred HHcCCcEEEEcCCCCCCCCCccchHHHHHHHHHHhcCCCcEEEecCCCCHHHHHHHHHcCCCEEEechHHHHHhhccChH
Q 017718 240 VQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFIGRPVVYSLAAEGEK 319 (367)
Q Consensus 240 ~~~G~d~i~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~~~via~GGI~~~~dv~kal~lGAd~V~ig~~~l~~l~~~G~~ 319 (367)
.+.|+++|+++||||+|+||++++++.|++++++++++++||+|||||+|.|++|||+||||+|++|||++|++...|++
T Consensus 236 ~~tg~~~I~vsnhggrqlD~g~st~~~L~ei~~av~~~~~vi~dGGiR~G~Dv~KAlALGA~~v~igrp~L~~l~~~g~~ 315 (360)
T COG1304 236 GGTGADGIEVSNHGGRQLDWGISTADSLPEIVEAVGDRIEVIADGGIRSGLDVAKALALGADAVGIGRPFLYGLAAGGEA 315 (360)
T ss_pred ccCCceEEEEEcCCCccccCCCChHHHHHHHHHHhCCCeEEEecCCCCCHHHHHHHHHhCCchhhhhHHHHHHHHhccHH
Confidence 99999999999999999999999999999999999878999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHhCCCChhhhcccceeeccC
Q 017718 320 GVRRVLEMLREEFELAMALSGCRSLKEITRDHIVTEWD 357 (367)
Q Consensus 320 ~v~~~i~~l~~el~~~m~~~G~~si~~l~~~~l~~~~~ 357 (367)
||.++++.|++||+.+|.++|+++|+||++..++....
T Consensus 316 GV~~~le~~~~El~~~M~L~G~~~i~el~~~~l~~~~~ 353 (360)
T COG1304 316 GVERVLEIIRKELKIAMALTGAKNIEELKRVPLVLSGR 353 (360)
T ss_pred HHHHHHHHHHHHHHHHHHhcCCCcHHHhccCceeeccc
Confidence 99999999999999999999999999999998876543
|
|
| >cd02809 alpha_hydroxyacid_oxid_FMN Family of homologous FMN-dependent alpha-hydroxyacid oxidizing enzymes | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.6e-59 Score=447.41 Aligned_cols=296 Identities=61% Similarity=0.939 Sum_probs=278.9
Q ss_pred HHHHHHHHHhCCccccccccCCCCchhhHHHhHhccccceeeccccCCCCCCccceeEcCeeeccceEeCcccchhccCC
Q 017718 8 MEYEAIAKEKLPKMVFDYYASGAEDQWTLQENRNAFSRILFRPRILIDVSKIDMNTTVLGFKISMPIMIAPTAMQKMAHP 87 (367)
Q Consensus 8 ~d~~~~A~~~l~~~~~~y~~~ga~~~~t~~~n~~~~~~i~l~pr~l~~~~~vd~st~i~g~~l~~Pi~iAPm~~~~l~~~ 87 (367)
.|||..|+++||+.+|+|+.+|++++.|+++|+.+|++|+|+||+|++++++||+|+|||++++.||+++||++.++.|+
T Consensus 1 ~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~n~~~~~~i~~~~~~l~~~~~id~~~~~lg~~~~~Pi~iapm~g~~~~~~ 80 (299)
T cd02809 1 ADLRALARRRLPKAVFDYIDGGAGDEVTLRRNRAAFDRIRLRPRVLRDVSKRDTSTTLLGQKLAMPFGIAPTGLQGLAHP 80 (299)
T ss_pred ChHHHHHHHhCCHHHhhhhccccchHHHHHHHHHHHHhceeecccCCCCCCCCCceEECCeecCCCeeeCcccccccCCc
Confidence 48999999999999999999999999999999999999999999999999999999999999999999999998888899
Q ss_pred hhhHHHHHHHHHcCCceeecCCCCCCHHHHHhhCCCceEEEEeecCCHHHHHHHHHHHHHcCCcEEEEecCCCCCCchhH
Q 017718 88 EGEYATARAASAAGTIMTLSSWSTSSVEEVASTGPGIRFFQLYVYKDRNVVAQLVRRAERAGFKAIALTVDTPRLGRREA 167 (367)
Q Consensus 88 ~~e~~~a~aa~~~G~~~~vs~~~~~~~e~i~~~~~~~~~~QLy~~~d~~~~~~~l~ra~~~G~~ai~itvd~p~~g~r~~ 167 (367)
+++.+++++|+++|+++++|++++.+.+++.+..+++.|+|||...|++.+.++++++++.|+++|.+|+|||..+.|
T Consensus 81 ~~~~~la~aa~~~g~~~~~~~~~~~~~~~i~~~~~~~~~~ql~~~~~~~~~~~~i~~~~~~g~~~i~l~~~~p~~~~~-- 158 (299)
T cd02809 81 DGELATARAAAAAGIPFTLSTVSTTSLEEVAAAAPGPRWFQLYVPRDREITEDLLRRAEAAGYKALVLTVDTPVLGRR-- 158 (299)
T ss_pred hHHHHHHHHHHHcCCCEEecCCCcCCHHHHHHhcCCCeEEEEeecCCHHHHHHHHHHHHHcCCCEEEEecCCCCCCCC--
Confidence 999999999999999999999988899999877778999999987799999999999999999999999999975333
Q ss_pred HhhhhcCCCCccccccccccccCccccccchhhHHHhhhccCccccH---HHHHhhcCCCEEEEecCCHHHHHHHHHcCC
Q 017718 168 DIKNRFTLPPFLTLKNFQGLDLGKMDEANDSGLAAYVAGQIDRSLSW---KWLQTITKLPILVKGVLTAEDARIAVQAGA 244 (367)
Q Consensus 168 ~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~---~~l~~~~~~Pv~vK~v~~~~~a~~~~~~G~ 244 (367)
..| +++++.+++||++|++.+.++|+.+.++|+
T Consensus 159 --------------------------------------------~~~~~i~~l~~~~~~pvivK~v~s~~~a~~a~~~G~ 194 (299)
T cd02809 159 --------------------------------------------LTWDDLAWLRSQWKGPLILKGILTPEDALRAVDAGA 194 (299)
T ss_pred --------------------------------------------CCHHHHHHHHHhcCCCEEEeecCCHHHHHHHHHCCC
Confidence 122 388888899999999999999999999999
Q ss_pred cEEEEcCCCCCCCCCccchHHHHHHHHHHhcCCCcEEEecCCCCHHHHHHHHHcCCCEEEechHHHHHhhccChHHHHHH
Q 017718 245 AGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFIGRPVVYSLAAEGEKGVRRV 324 (367)
Q Consensus 245 d~i~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~~~via~GGI~~~~dv~kal~lGAd~V~ig~~~l~~l~~~G~~~v~~~ 324 (367)
|+|+++||||++.++++++++.|+++++.+++++|||++|||+++.|++|+|++|||+|++||||++++...|++++.++
T Consensus 195 d~I~v~~~gG~~~~~g~~~~~~l~~i~~~~~~~ipvia~GGI~~~~d~~kal~lGAd~V~ig~~~l~~~~~~g~~~v~~~ 274 (299)
T cd02809 195 DGIVVSNHGGRQLDGAPATIDALPEIVAAVGGRIEVLLDGGIRRGTDVLKALALGADAVLIGRPFLYGLAAGGEAGVAHV 274 (299)
T ss_pred CEEEEcCCCCCCCCCCcCHHHHHHHHHHHhcCCCeEEEeCCCCCHHHHHHHHHcCCCEEEEcHHHHHHHHhcCHHHHHHH
Confidence 99999999999999999999999999988865799999999999999999999999999999999999888899999999
Q ss_pred HHHHHHHHHHHHHHhCCCChhhhcc
Q 017718 325 LEMLREEFELAMALSGCRSLKEITR 349 (367)
Q Consensus 325 i~~l~~el~~~m~~~G~~si~~l~~ 349 (367)
++.+++||+.+|.++|+++++|+++
T Consensus 275 i~~l~~el~~~m~~~G~~~i~~l~~ 299 (299)
T cd02809 275 LEILRDELERAMALLGCASLADLDP 299 (299)
T ss_pred HHHHHHHHHHHHHHHCCCCHHHhCc
Confidence 9999999999999999999999874
|
This family occurs in both prokaryotes and eukaryotes. Members of this family include flavocytochrome b2 (FCB2), glycolate oxidase (GOX), lactate monooxygenase (LMO), mandelate dehydrogenase (MDH), and long chain hydroxyacid oxidase (LCHAO). In green plants, glycolate oxidase is one of the key enzymes in photorespiration where it oxidizes glycolate to glyoxylate. LMO catalyzes the oxidation of L-lactate to acetate and carbon dioxide. MDH oxidizes (S)-mandelate to phenylglyoxalate. It is an enzyme in the mandelate pathway that occurs in several strains of Pseudomonas which converts (R)-mandelate to benzoate. |
| >cd02811 IDI-2_FMN Isopentenyl-diphosphate:dimethylallyl diphosphate isomerase type 2 (IDI-2) FMN-binding domain | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.4e-39 Score=311.75 Aligned_cols=267 Identities=28% Similarity=0.391 Sum_probs=211.3
Q ss_pred HhHhccccceeeccccC--CCCCCccceeEcCeeeccceEeCcccchhccCChhhHHHHHHHHHcCCceeecCCCCC--C
Q 017718 38 ENRNAFSRILFRPRILI--DVSKIDMNTTVLGFKISMPIMIAPTAMQKMAHPEGEYATARAASAAGTIMTLSSWSTS--S 113 (367)
Q Consensus 38 ~n~~~~~~i~l~pr~l~--~~~~vd~st~i~g~~l~~Pi~iAPm~~~~l~~~~~e~~~a~aa~~~G~~~~vs~~~~~--~ 113 (367)
.+...||+|+|+|+.|+ +++++||+|+|+|+++++||+++||++++....+.+..++++|.++|+++++++++.. .
T Consensus 17 ~~~~~~d~i~l~~~~l~~~~~~~id~s~~~~G~~l~~Pi~ia~mtGg~~~~~~in~~La~~a~~~g~~~~~Gs~~~~~~~ 96 (326)
T cd02811 17 GGSTGFDDVRLVHNALPELDLDDIDLSTEFLGKRLSAPLLISAMTGGSEKAKEINRNLAEAAEELGIAMGVGSQRAALED 96 (326)
T ss_pred cCCCChhhEEEecccCCCCCcccCCCeeEECCceecCCEEEeCCCCCChHHHHHHHHHHHHHHHcCCCeEecCchhhccC
Confidence 35668999999999998 8899999999999999999999999887533334578999999999999999988431 1
Q ss_pred ------HHHHHhhCC-CceEEEEeecC----CHHHHHHHHHHHHHcCCcEEEEecCCCCCCchhHHhhhhcCCCCccccc
Q 017718 114 ------VEEVASTGP-GIRFFQLYVYK----DRNVVAQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLTLK 182 (367)
Q Consensus 114 ------~e~i~~~~~-~~~~~QLy~~~----d~~~~~~~l~ra~~~G~~ai~itvd~p~~g~r~~~~~~~~~~p~~~~~~ 182 (367)
.+.+.+..+ .+.+..+.... +.+... +.++..+++++.++++++.. ...|
T Consensus 97 ~e~~~~~~~vr~~~~~~p~~~Nl~~~~~~~~~~~~~~---~~i~~~~adalel~l~~~q~----------~~~~------ 157 (326)
T cd02811 97 PELAESFTVVREAPPNGPLIANLGAVQLNGYGVEEAR---RAVEMIEADALAIHLNPLQE----------AVQP------ 157 (326)
T ss_pred hhhhhHHHHHHHhCCCceEEeecCccccCCCCHHHHH---HHHHhcCCCcEEEeCcchHh----------hcCC------
Confidence 222334444 45444444322 444433 34455688999999876531 0011
Q ss_pred cccccccCccccccchhhHHHhhhccCccc-cH----HHHHhhcCCCEEEEec---CCHHHHHHHHHcCCcEEEEcCCCC
Q 017718 183 NFQGLDLGKMDEANDSGLAAYVAGQIDRSL-SW----KWLQTITKLPILVKGV---LTAEDARIAVQAGAAGIIVSNHGA 254 (367)
Q Consensus 183 ~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~-~~----~~l~~~~~~Pv~vK~v---~~~~~a~~~~~~G~d~i~vs~~gg 254 (367)
..+.++ .| +++++.+++||++|++ .+.++|+.+.++|+|+|+|+|+||
T Consensus 158 ------------------------~~~~df~~~~~~i~~l~~~~~vPVivK~~g~g~s~~~a~~l~~~Gvd~I~vsG~GG 213 (326)
T cd02811 158 ------------------------EGDRDFRGWLERIEELVKALSVPVIVKEVGFGISRETAKRLADAGVKAIDVAGAGG 213 (326)
T ss_pred ------------------------CCCcCHHHHHHHHHHHHHhcCCCEEEEecCCCCCHHHHHHHHHcCCCEEEECCCCC
Confidence 112233 23 3778888999999998 789999999999999999999988
Q ss_pred CC--------------------CCCccchHHHHHHHHHHhcCCCcEEEecCCCCHHHHHHHHHcCCCEEEechHHHHHhh
Q 017718 255 RQ--------------------LDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFIGRPVVYSLA 314 (367)
Q Consensus 255 ~~--------------------~~~~~~~~~~l~~i~~~~~~~~~via~GGI~~~~dv~kal~lGAd~V~ig~~~l~~l~ 314 (367)
+. .+++.++.+.|+++++.+. ++|||++|||+++.|++|+|++|||+|++|||||.++.
T Consensus 214 t~~~~ie~~r~~~~~~~~~~~~~~~g~~t~~~l~~~~~~~~-~ipIiasGGIr~~~dv~kal~lGAd~V~i~~~~L~~~~ 292 (326)
T cd02811 214 TSWARVENYRAKDSDQRLAEYFADWGIPTAASLLEVRSALP-DLPLIASGGIRNGLDIAKALALGADLVGMAGPFLKAAL 292 (326)
T ss_pred CcccccccccccccccccccccccccccHHHHHHHHHHHcC-CCcEEEECCCCCHHHHHHHHHhCCCEEEEcHHHHHHHh
Confidence 42 1336677888999887664 79999999999999999999999999999999999876
Q ss_pred ccChHHHHHHHHHHHHHHHHHHHHhCCCChhhhcc
Q 017718 315 AEGEKGVRRVLEMLREEFELAMALSGCRSLKEITR 349 (367)
Q Consensus 315 ~~G~~~v~~~i~~l~~el~~~m~~~G~~si~~l~~ 349 (367)
. |.+++.++++.+++||+.+|.++|++|++|++.
T Consensus 293 ~-g~~~~~~~i~~~~~el~~~m~~~G~~si~el~~ 326 (326)
T cd02811 293 E-GEEAVIETIEQIIEELRTAMFLTGAKNLAELKQ 326 (326)
T ss_pred c-CHHHHHHHHHHHHHHHHHHHHHhCCCCHHHhcC
Confidence 6 999999999999999999999999999999873
|
Two types of IDIs have been characterized at present. The long known IDI-1 is only dependent on divalent metals for activity, whereas IDI-2 requires a metal, FMN and NADPH. IDI-2 catalyzes the interconversion of isopentenyl diphosphate (IPP) and dimethylallyl diphosphate (DMAPP) in the mevalonate pathway. |
| >PRK05437 isopentenyl pyrophosphate isomerase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2e-38 Score=310.90 Aligned_cols=276 Identities=26% Similarity=0.384 Sum_probs=218.5
Q ss_pred HhccccceeeccccC--CCCCCccceeEcCeeeccceEeCcccchhccCChhhHHHHHHHHHcCCceeecCCCC--CC--
Q 017718 40 RNAFSRILFRPRILI--DVSKIDMNTTVLGFKISMPIMIAPTAMQKMAHPEGEYATARAASAAGTIMTLSSWST--SS-- 113 (367)
Q Consensus 40 ~~~~~~i~l~pr~l~--~~~~vd~st~i~g~~l~~Pi~iAPm~~~~l~~~~~e~~~a~aa~~~G~~~~vs~~~~--~~-- 113 (367)
...||+|+|+|+.|+ +.++|||+|+|+|+++++||+++||++++-...+.|.+++++|+++|+++++|+++. .+
T Consensus 27 ~~~~d~v~l~~~~lp~~~~~~vd~s~~~~g~~l~~Pi~i~~MtGgs~~~~~in~~La~~a~~~G~~~~~Gs~~~~~~~~~ 106 (352)
T PRK05437 27 TTGFDDVRLIHNALPELDLDDIDLSTEFLGKKLSAPFLINAMTGGSEKAKEINRKLAEAAEELGIAMGVGSQRAALKDPE 106 (352)
T ss_pred CCChheEEEecccCCCCChhhccceeeECCceecCCEEecccCCCChhHHHHHHHHHHHHHHcCCCeEecccHhhccChh
Confidence 347999999999998 788999999999999999999999998753333567899999999999999998853 11
Q ss_pred ----HHHHHhhCC-CceEEEEeecCCHHH-HHHHHHHHHHcCCcEEEEecCCCCCCchhHHhhhhcCCCCcccccccccc
Q 017718 114 ----VEEVASTGP-GIRFFQLYVYKDRNV-VAQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLTLKNFQGL 187 (367)
Q Consensus 114 ----~e~i~~~~~-~~~~~QLy~~~d~~~-~~~~l~ra~~~G~~ai~itvd~p~~g~r~~~~~~~~~~p~~~~~~~~~~~ 187 (367)
.+.+.+..| .|.+..|+....... .+++.+.++..+++++.++++++.. ...|
T Consensus 107 ~~~~~~~vr~~~p~~p~~aNl~~~~~~~~~~~~~~~~~~~~~adal~l~l~~~qe----------~~~p----------- 165 (352)
T PRK05437 107 LADSFSVVRKVAPDGLLFANLGAVQLYGYGVEEAQRAVEMIEADALQIHLNPLQE----------LVQP----------- 165 (352)
T ss_pred hHHHHHHHHHHCCCceEEeecCccccCCCCHHHHHHHHHhcCCCcEEEeCccchh----------hcCC-----------
Confidence 122334444 556665554322112 1233444556788999999876531 0011
Q ss_pred ccCccccccchhhHHHhhhccCcccc-H----HHHHhhcCCCEEEEec---CCHHHHHHHHHcCCcEEEEcCCCCCC---
Q 017718 188 DLGKMDEANDSGLAAYVAGQIDRSLS-W----KWLQTITKLPILVKGV---LTAEDARIAVQAGAAGIIVSNHGARQ--- 256 (367)
Q Consensus 188 ~~~~~~~~~~~~~~~~~~~~~d~~~~-~----~~l~~~~~~Pv~vK~v---~~~~~a~~~~~~G~d~i~vs~~gg~~--- 256 (367)
..+.+++ | +++++.+++||++|++ .+.++|+.+.++|+|+|+|+|+||+.
T Consensus 166 -------------------~g~~~f~~~le~i~~i~~~~~vPVivK~~g~g~s~~~a~~l~~~Gvd~I~Vsg~GGt~~~~ 226 (352)
T PRK05437 166 -------------------EGDRDFRGWLDNIAEIVSALPVPVIVKEVGFGISKETAKRLADAGVKAIDVAGAGGTSWAA 226 (352)
T ss_pred -------------------CCcccHHHHHHHHHHHHHhhCCCEEEEeCCCCCcHHHHHHHHHcCCCEEEECCCCCCCccc
Confidence 1122331 2 3788888999999998 78999999999999999999998832
Q ss_pred ---------------CCCccchHHHHHHHHHHhcCCCcEEEecCCCCHHHHHHHHHcCCCEEEechHHHHHhhccChHHH
Q 017718 257 ---------------LDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFIGRPVVYSLAAEGEKGV 321 (367)
Q Consensus 257 ---------------~~~~~~~~~~l~~i~~~~~~~~~via~GGI~~~~dv~kal~lGAd~V~ig~~~l~~l~~~G~~~v 321 (367)
.+++.++.+.|+++++.+ .++|||++|||+++.|++|+|++|||+|++||++++++...|.+++
T Consensus 227 ie~~R~~~~~~~~~~~~~g~pt~~~l~~i~~~~-~~ipvia~GGI~~~~dv~k~l~~GAd~v~ig~~~l~~~~~~g~~~v 305 (352)
T PRK05437 227 IENYRARDDRLASYFADWGIPTAQSLLEARSLL-PDLPIIASGGIRNGLDIAKALALGADAVGMAGPFLKAALEGGEEAV 305 (352)
T ss_pred hhhhhhhccccccccccccCCHHHHHHHHHHhc-CCCeEEEECCCCCHHHHHHHHHcCCCEEEEhHHHHHHHHhccHHHH
Confidence 145778899999998863 3799999999999999999999999999999999999888899999
Q ss_pred HHHHHHHHHHHHHHHHHhCCCChhhhcccceeecc
Q 017718 322 RRVLEMLREEFELAMALSGCRSLKEITRDHIVTEW 356 (367)
Q Consensus 322 ~~~i~~l~~el~~~m~~~G~~si~~l~~~~l~~~~ 356 (367)
.++++.+.+||+.+|..+|+++++||++..+...+
T Consensus 306 ~~~i~~~~~eL~~~m~~~G~~~i~eL~~~~~~~~~ 340 (352)
T PRK05437 306 IELIEQWIEELKIAMFLTGAKNIAELRKVPLVLSG 340 (352)
T ss_pred HHHHHHHHHHHHHHHHHhCCCCHHHhCCCCEEecH
Confidence 99999999999999999999999999988776543
|
|
| >TIGR02151 IPP_isom_2 isopentenyl-diphosphate delta-isomerase, type 2 | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.3e-37 Score=301.72 Aligned_cols=273 Identities=26% Similarity=0.377 Sum_probs=211.1
Q ss_pred hccccceeeccccC--CCCCCccceeEcCeeeccceEeCcccchhccCChhhHHHHHHHHHcCCceeecCCCCC--C---
Q 017718 41 NAFSRILFRPRILI--DVSKIDMNTTVLGFKISMPIMIAPTAMQKMAHPEGEYATARAASAAGTIMTLSSWSTS--S--- 113 (367)
Q Consensus 41 ~~~~~i~l~pr~l~--~~~~vd~st~i~g~~l~~Pi~iAPm~~~~l~~~~~e~~~a~aa~~~G~~~~vs~~~~~--~--- 113 (367)
+.||+|+|+|..|+ +++++||||+|+|+++++||+++||++++......+..++++|+++|+++++++++.. .
T Consensus 21 ~~~~~~~~~~~~lp~~~~~~~d~s~~~~g~~l~~Pi~iaaMtGg~~~~~~in~~La~~a~~~g~~~~~Gs~~~~~~~~~~ 100 (333)
T TIGR02151 21 TGFDDITLIHNALPEINLDDIDLTTEFLGKRLKAPFYINAMTGGSEEAGKINRNLARAARELGIPMGVGSQRAALKDPET 100 (333)
T ss_pred CCcceEEEecCCCCCCCcccCCCceEECCccccCCEEEeCCCCCchhHHHHHHHHHHHHHHcCCCeEEcCchhhccChhh
Confidence 45999999999997 6789999999999999999999999877532234477999999999999999987521 1
Q ss_pred ---HHHHHhhCC-CceEEEEeecCCHH-HHHHHHHHHHHcCCcEEEEecCCCCCCchhHHhhhhcCCCCccccccccccc
Q 017718 114 ---VEEVASTGP-GIRFFQLYVYKDRN-VVAQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLTLKNFQGLD 188 (367)
Q Consensus 114 ---~e~i~~~~~-~~~~~QLy~~~d~~-~~~~~l~ra~~~G~~ai~itvd~p~~g~r~~~~~~~~~~p~~~~~~~~~~~~ 188 (367)
...+.+..+ .|.+..|......+ ...+..+.++..+++++.++++++.. ...|
T Consensus 101 ~~~~~~vr~~~~~~p~i~nl~~~~~~~~~~~~~~~~i~~i~adal~i~ln~~q~----------~~~p------------ 158 (333)
T TIGR02151 101 ADTFEVVREEAPNGPLIANIGAPQLVEGGPEEAQEAIDMIEADALAIHLNVLQE----------LVQP------------ 158 (333)
T ss_pred HhHHHHHHHhCCCCcEEeecCchhhccccHHHHHHHHHHhcCCCEEEcCccccc----------ccCC------------
Confidence 112333234 45554443211111 13334444555678999999987531 0011
Q ss_pred cCccccccchhhHHHhhhccCccc-cH----HHHHhhcCCCEEEEec---CCHHHHHHHHHcCCcEEEEcCCCCCC----
Q 017718 189 LGKMDEANDSGLAAYVAGQIDRSL-SW----KWLQTITKLPILVKGV---LTAEDARIAVQAGAAGIIVSNHGARQ---- 256 (367)
Q Consensus 189 ~~~~~~~~~~~~~~~~~~~~d~~~-~~----~~l~~~~~~Pv~vK~v---~~~~~a~~~~~~G~d~i~vs~~gg~~---- 256 (367)
..++++ .| +++++.+++||++|.+ .+.+.|+.+.++|+|+|+|+|+||+.
T Consensus 159 ------------------~g~~~f~~~le~i~~i~~~~~vPVivK~~g~g~~~~~a~~L~~aGvd~I~Vsg~gGt~~~~i 220 (333)
T TIGR02151 159 ------------------EGDRNFKGWLEKIAEICSQLSVPVIVKEVGFGISKEVAKLLADAGVSAIDVAGAGGTSWAQV 220 (333)
T ss_pred ------------------CCCcCHHHHHHHHHHHHHhcCCCEEEEecCCCCCHHHHHHHHHcCCCEEEECCCCCCcccch
Confidence 113333 23 2788888999999998 78999999999999999999998863
Q ss_pred --------------CCCccchHHHHHHHHHHhcCCCcEEEecCCCCHHHHHHHHHcCCCEEEechHHHHHhhccChHHHH
Q 017718 257 --------------LDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFIGRPVVYSLAAEGEKGVR 322 (367)
Q Consensus 257 --------------~~~~~~~~~~l~~i~~~~~~~~~via~GGI~~~~dv~kal~lGAd~V~ig~~~l~~l~~~G~~~v~ 322 (367)
.+++.++.+.|.++++ ...++|||++|||+++.|+.|+|++|||+|++||+++.++...|++++.
T Consensus 221 e~~r~~~~~~~~~~~~~g~~t~~~l~~~~~-~~~~ipVIasGGI~~~~di~kaLalGAd~V~igr~~L~~~~~~g~~~v~ 299 (333)
T TIGR02151 221 ENYRAKGSNLASFFNDWGIPTAASLLEVRS-DAPDAPIIASGGLRTGLDVAKAIALGADAVGMARPFLKAALDEGEEAVI 299 (333)
T ss_pred hhhcccccccchhhhcccHhHHHHHHHHHh-cCCCCeEEEECCCCCHHHHHHHHHhCCCeehhhHHHHHHHHhcCHHHHH
Confidence 2346667788888876 2237999999999999999999999999999999999987767999999
Q ss_pred HHHHHHHHHHHHHHHHhCCCChhhhcccceee
Q 017718 323 RVLEMLREEFELAMALSGCRSLKEITRDHIVT 354 (367)
Q Consensus 323 ~~i~~l~~el~~~m~~~G~~si~~l~~~~l~~ 354 (367)
++++.+.+||+.+|.++|+++++||++..+..
T Consensus 300 ~~i~~~~~eL~~~m~~~G~~~i~el~~~~~~~ 331 (333)
T TIGR02151 300 EEIELIIEELKVAMFLTGAKTIAELKKVPLVI 331 (333)
T ss_pred HHHHHHHHHHHHHHHHhCCCCHHHHccCCeEe
Confidence 99999999999999999999999999887643
|
Isopentenyl-diphosphate delta-isomerase (IPP isomerase) interconverts isopentenyl diphosphate and dimethylallyl diphosphate. This model represents the type 2 enzyme. FMN, NADPH, and Mg2+ are required by this form, which lacks homology to the type 1 enzyme (TIGR02150). IPP is precursor to many compounds, including enzyme cofactors, sterols, and isoprenoids. |
| >PRK05458 guanosine 5'-monophosphate oxidoreductase; Provisional | Back alignment and domain information |
|---|
Probab=99.96 E-value=1.2e-27 Score=230.57 Aligned_cols=256 Identities=19% Similarity=0.239 Sum_probs=190.9
Q ss_pred ccccceeeccccCC--CCCCccceeEcCeeeccceEeCcccchhccCChhhHHHHHHHHHcCCceeecCCCCCCHHHHH-
Q 017718 42 AFSRILFRPRILID--VSKIDMNTTVLGFKISMPIMIAPTAMQKMAHPEGEYATARAASAAGTIMTLSSWSTSSVEEVA- 118 (367)
Q Consensus 42 ~~~~i~l~pr~l~~--~~~vd~st~i~g~~l~~Pi~iAPm~~~~l~~~~~e~~~a~aa~~~G~~~~vs~~~~~~~e~i~- 118 (367)
.||+++|+|..++. .+++|++|+|+|++++.||++++|.. ..|..+|++|+++|...++.-+ ..|+..
T Consensus 6 ~Fddv~lv~~~lp~~s~~dvdlst~~~~~~l~~P~~inAM~t------~iN~~LA~~a~~~G~~~~~~k~---~~e~~~~ 76 (326)
T PRK05458 6 DYEDIQLIPNKCIVNSRSECDTSVTLGPRTFKLPVVPANMQT------IIDEKIAEWLAENGYFYIMHRF---DPEARIP 76 (326)
T ss_pred CccceEEecCCCCCCCHHHcccceEECCcEecCcEEEecccc------hhHHHHHHHHHHcCCEEEEecC---CHHHHHH
Confidence 59999999999974 56999999999999999999999942 4689999999999988887542 445433
Q ss_pred ---hhCCCceEEEEeecCCHHHHHHHHHHHHHcCC--cEEEEecCCCCCCchhHHhhhhcCCCCccccccccccccCccc
Q 017718 119 ---STGPGIRFFQLYVYKDRNVVAQLVRRAERAGF--KAIALTVDTPRLGRREADIKNRFTLPPFLTLKNFQGLDLGKMD 193 (367)
Q Consensus 119 ---~~~~~~~~~QLy~~~d~~~~~~~l~ra~~~G~--~ai~itvd~p~~g~r~~~~~~~~~~p~~~~~~~~~~~~~~~~~ 193 (367)
...+...+.-+-.+..++.. +.++...++|+ ++|+| |+... .
T Consensus 77 ~~r~~~~~~l~v~~~vg~~~~~~-~~~~~Lv~ag~~~d~i~i--D~a~g----------h-------------------- 123 (326)
T PRK05458 77 FIKDMHEQGLIASISVGVKDDEY-DFVDQLAAEGLTPEYITI--DIAHG----------H-------------------- 123 (326)
T ss_pred HHHhccccccEEEEEecCCHHHH-HHHHHHHhcCCCCCEEEE--ECCCC----------c--------------------
Confidence 22232233444444444443 33444555654 87766 54321 0
Q ss_pred cccchhhHHHhhhccCccccHHHHHhhcC-CCEEEEecCCHHHHHHHHHcCCcEEEEcCCCCCCC------CCccc--hH
Q 017718 194 EANDSGLAAYVAGQIDRSLSWKWLQTITK-LPILVKGVLTAEDARIAVQAGAAGIIVSNHGARQL------DYVPA--TI 264 (367)
Q Consensus 194 ~~~~~~~~~~~~~~~d~~~~~~~l~~~~~-~Pv~vK~v~~~~~a~~~~~~G~d~i~vs~~gg~~~------~~~~~--~~ 264 (367)
.....+ ..+++|+.++ +||++|.+.+.++++.+.++|+|+|.+++|||++. ..+.+ .+
T Consensus 124 ---~~~~~e----------~I~~ir~~~p~~~vi~g~V~t~e~a~~l~~aGad~i~vg~~~G~~~~t~~~~g~~~~~w~l 190 (326)
T PRK05458 124 ---SDSVIN----------MIQHIKKHLPETFVIAGNVGTPEAVRELENAGADATKVGIGPGKVCITKIKTGFGTGGWQL 190 (326)
T ss_pred ---hHHHHH----------HHHHHHhhCCCCeEEEEecCCHHHHHHHHHcCcCEEEECCCCCcccccccccCCCCCccHH
Confidence 000111 1348888886 88888889999999999999999999999999652 12345 44
Q ss_pred HHHHHHHHHhcCCCcEEEecCCCCHHHHHHHHHcCCCEEEechHHH------------------HHh-----hc------
Q 017718 265 MALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFIGRPVV------------------YSL-----AA------ 315 (367)
Q Consensus 265 ~~l~~i~~~~~~~~~via~GGI~~~~dv~kal~lGAd~V~ig~~~l------------------~~l-----~~------ 315 (367)
..+.++++.+ ++|||++|||+++.|++|+|++|||+||+|++|+ .-+ ..
T Consensus 191 ~ai~~~~~~~--~ipVIAdGGI~~~~Di~KaLa~GA~aV~vG~~~~~~~espg~~~~~~g~~~k~y~g~~~~~~~~~~~~ 268 (326)
T PRK05458 191 AALRWCAKAA--RKPIIADGGIRTHGDIAKSIRFGATMVMIGSLFAGHEESPGKTVEIDGKLYKEYFGSASEFQKGEYKN 268 (326)
T ss_pred HHHHHHHHHc--CCCEEEeCCCCCHHHHHHHHHhCCCEEEechhhcCCccCCCceeeecchhHHHhhCcHhhhccccccc
Confidence 5688888776 7999999999999999999999999999999997 111 01
Q ss_pred -cChH-------HHHHHHHHHHHHHHHHHHHhCCCChhhhcccceee
Q 017718 316 -EGEK-------GVRRVLEMLREEFELAMALSGCRSLKEITRDHIVT 354 (367)
Q Consensus 316 -~G~~-------~v~~~i~~l~~el~~~m~~~G~~si~~l~~~~l~~ 354 (367)
+|.+ .+.+++..+..+|+..|.++|++++.||+...++.
T Consensus 269 ~eG~e~~v~~~G~l~~~l~~l~~gLr~~m~~~Ga~~i~el~~~~~v~ 315 (326)
T PRK05458 269 VEGKKILVPHKGSLKDTLTEMEQDLQSSISYAGGRDLDAIRKVDYVI 315 (326)
T ss_pred cCCceEEecccCCHHHHHHHHHHHHHHHHHHhCCCCHHHHhcCCEEE
Confidence 2333 48899999999999999999999999999754433
|
|
| >TIGR01306 GMP_reduct_2 guanosine monophosphate reductase, bacterial | Back alignment and domain information |
|---|
Probab=99.96 E-value=2.8e-27 Score=227.27 Aligned_cols=256 Identities=21% Similarity=0.243 Sum_probs=186.9
Q ss_pred ccccceeeccccCC--CCCCccceeEcCeeeccceEeCcccchhccCChhhHHHHHHHHHcCCceeecCCCCCCHHHHH-
Q 017718 42 AFSRILFRPRILID--VSKIDMNTTVLGFKISMPIMIAPTAMQKMAHPEGEYATARAASAAGTIMTLSSWSTSSVEEVA- 118 (367)
Q Consensus 42 ~~~~i~l~pr~l~~--~~~vd~st~i~g~~l~~Pi~iAPm~~~~l~~~~~e~~~a~aa~~~G~~~~vs~~~~~~~e~i~- 118 (367)
.||+++|+|..++. .+++|++|+|++++++.||++++|.. ..|..||++|+++|...++..+ +.|+..
T Consensus 3 ~FddV~lvp~~lp~~s~~dVdlst~~~~~~l~~P~~inAM~t------~in~~LA~~a~~~G~~~i~hK~---~~E~~~s 73 (321)
T TIGR01306 3 DYEDIQLIPNKCIVNSRSECDTSVTLGKHKFKLPVVPANMQT------IIDEKLAEQLAENGYFYIMHRF---DEESRIP 73 (321)
T ss_pred CcccEEEecCCCCCCCHHHceeeEEECCcEecCcEEeeccch------hhhHHHHHHHHHcCCEEEEecC---CHHHHHH
Confidence 69999999999975 57999999999999999999999942 4689999999999999888653 445432
Q ss_pred ---hhCCCceEEEEeecCCHHHHHHHHHHHHHcC--CcEEEEecCCCCCCchhHHhhhhcCCCCccccccccccccCccc
Q 017718 119 ---STGPGIRFFQLYVYKDRNVVAQLVRRAERAG--FKAIALTVDTPRLGRREADIKNRFTLPPFLTLKNFQGLDLGKMD 193 (367)
Q Consensus 119 ---~~~~~~~~~QLy~~~d~~~~~~~l~ra~~~G--~~ai~itvd~p~~g~r~~~~~~~~~~p~~~~~~~~~~~~~~~~~ 193 (367)
+..+....+-+-.+..++.. +.++...++| .+.+++ |+.. |+
T Consensus 74 fvrk~k~~~L~v~~SvG~t~e~~-~r~~~lv~a~~~~d~i~~--D~ah----------g~-------------------- 120 (321)
T TIGR01306 74 FIKDMQERGLFASISVGVKACEY-EFVTQLAEEALTPEYITI--DIAH----------GH-------------------- 120 (321)
T ss_pred HHHhccccccEEEEEcCCCHHHH-HHHHHHHhcCCCCCEEEE--eCcc----------Cc--------------------
Confidence 22222222323333344433 3344445567 466554 4321 11
Q ss_pred cccchhhHHHhhhccCccccHHHHHhhcCCCEEEEe-cCCHHHHHHHHHcCCcEEEEcCCCCCCC--------CCccchH
Q 017718 194 EANDSGLAAYVAGQIDRSLSWKWLQTITKLPILVKG-VLTAEDARIAVQAGAAGIIVSNHGARQL--------DYVPATI 264 (367)
Q Consensus 194 ~~~~~~~~~~~~~~~d~~~~~~~l~~~~~~Pv~vK~-v~~~~~a~~~~~~G~d~i~vs~~gg~~~--------~~~~~~~ 264 (367)
...+.. ..+++|+.++.|+++|+ +.+.++|+.+.++|||+|.|++++|+.. ..+.+.+
T Consensus 121 -------s~~~~~------~i~~i~~~~p~~~vi~GnV~t~e~a~~l~~aGad~I~V~~G~G~~~~tr~~~g~g~~~~~l 187 (321)
T TIGR01306 121 -------SNSVIN------MIKHIKTHLPDSFVIAGNVGTPEAVRELENAGADATKVGIGPGKVCITKIKTGFGTGGWQL 187 (321)
T ss_pred -------hHHHHH------HHHHHHHhCCCCEEEEecCCCHHHHHHHHHcCcCEEEECCCCCccccceeeeccCCCchHH
Confidence 000000 24589999988866666 8999999999999999999998766531 1222356
Q ss_pred HHHHHHHHHhcCCCcEEEecCCCCHHHHHHHHHcCCCEEEechHHH--------------------HHhhc---------
Q 017718 265 MALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFIGRPVV--------------------YSLAA--------- 315 (367)
Q Consensus 265 ~~l~~i~~~~~~~~~via~GGI~~~~dv~kal~lGAd~V~ig~~~l--------------------~~l~~--------- 315 (367)
..+.+++++. ++|||+||||+++.|++|||++|||+||+|++|- +++..
T Consensus 188 ~ai~ev~~a~--~~pVIadGGIr~~~Di~KALa~GAd~Vmig~~~ag~~Espg~~~~~~g~~~k~y~g~~~~~~~~~~~~ 265 (321)
T TIGR01306 188 AALRWCAKAA--RKPIIADGGIRTHGDIAKSIRFGASMVMIGSLFAGHEESPGETVEKDGKLYKEYFGSASEFQKGEHKN 265 (321)
T ss_pred HHHHHHHHhc--CCeEEEECCcCcHHHHHHHHHcCCCEEeechhhcCcccCCCceEeeCCeEHhhhcCchhhhccccccc
Confidence 7899998877 7999999999999999999999999999999882 11110
Q ss_pred -cCh-------HHHHHHHHHHHHHHHHHHHHhCCCChhhhcccceee
Q 017718 316 -EGE-------KGVRRVLEMLREEFELAMALSGCRSLKEITRDHIVT 354 (367)
Q Consensus 316 -~G~-------~~v~~~i~~l~~el~~~m~~~G~~si~~l~~~~l~~ 354 (367)
+|. ..+.+++..+...|+..|.++|++++.||+...++.
T Consensus 266 ~eg~~~~v~~~g~~~~~~~~~~~glr~~~~~~G~~~l~~~~~~~~~~ 312 (321)
T TIGR01306 266 VEGKKMFVEHKGSLSDTLIEMQQDLQSSISYAGGKDLDSLRTVDYVI 312 (321)
T ss_pred ccceEEEeccCCCHHHHHHHHHHHHHHHHHhcCCCcHHHHhhCCEEE
Confidence 111 128889999999999999999999999999775544
|
A deep split separates two families of GMP reductase. The other (TIGR01305) is found in eukaryotic and some proteobacterial lineages, including E. coli, while this family is found in a variety of bacterial lineages. |
| >TIGR01305 GMP_reduct_1 guanosine monophosphate reductase, eukaryotic | Back alignment and domain information |
|---|
Probab=99.94 E-value=4.7e-25 Score=210.36 Aligned_cols=255 Identities=22% Similarity=0.278 Sum_probs=188.2
Q ss_pred ccccceeeccccC--CCCCCccceeEcCe-----eeccceEeCcccchhccCChhhHHHHHHHHHcCCceeecCCCCCCH
Q 017718 42 AFSRILFRPRILI--DVSKIDMNTTVLGF-----KISMPIMIAPTAMQKMAHPEGEYATARAASAAGTIMTLSSWSTSSV 114 (367)
Q Consensus 42 ~~~~i~l~pr~l~--~~~~vd~st~i~g~-----~l~~Pi~iAPm~~~~l~~~~~e~~~a~aa~~~G~~~~vs~~~~~~~ 114 (367)
.||++.|+|+... .-+++|++++|..+ .+..|++-|.|--. ++..+|.+.+++|...++.- ..++
T Consensus 9 ~f~DVll~P~~s~v~sR~evdl~~~~~~~~~~~~~~~iPii~AnMdtv------~~~~mA~~la~~g~~~~iHk--~~~~ 80 (343)
T TIGR01305 9 DFKDVLLRPKRSTLKSRADVELERTFTFRNSKQTYSGVPIIAANMDTV------GTFEMAAALSQHSIFTAIHK--HYSV 80 (343)
T ss_pred CccceEEecCcCccCcHHHceeeEEEccccCCceeeCCceEecCCCcc------cCHHHHHHHHHCCCeEEEee--CCCH
Confidence 6999999997543 44889999999744 78999999999544 47899999999999999864 3455
Q ss_pred HHHH----hhCCC-ceEEEEeecCCHHHHHHHHHHHHHc--CCcEEEEecCCCCCCchhHHhhhhcCCCCcccccccccc
Q 017718 115 EEVA----STGPG-IRFFQLYVYKDRNVVAQLVRRAERA--GFKAIALTVDTPRLGRREADIKNRFTLPPFLTLKNFQGL 187 (367)
Q Consensus 115 e~i~----~~~~~-~~~~QLy~~~d~~~~~~~l~ra~~~--G~~ai~itvd~p~~g~r~~~~~~~~~~p~~~~~~~~~~~ 187 (367)
|+.. ...+. ....-+-.+..++. .+.++...++ +.+.|+| |+.. |+
T Consensus 81 e~~~~~v~~~~~~~~~~~~vsvG~~~~d-~er~~~L~~a~~~~d~ivi--D~Ah----------Gh-------------- 133 (343)
T TIGR01305 81 DEWKAFATNSSPDCLQNVAVSSGSSDND-LEKMTSILEAVPQLKFICL--DVAN----------GY-------------- 133 (343)
T ss_pred HHHHHHHHhhcccccceEEEEeccCHHH-HHHHHHHHhcCCCCCEEEE--ECCC----------Cc--------------
Confidence 5532 21221 11111122323332 3445555555 4777766 4321 11
Q ss_pred ccCccccccchhhHHHhhhccCccccHHHHHhhcCCCEEEEe-cCCHHHHHHHHHcCCcEEEEc-----CCCCCCCCCcc
Q 017718 188 DLGKMDEANDSGLAAYVAGQIDRSLSWKWLQTITKLPILVKG-VLTAEDARIAVQAGAAGIIVS-----NHGARQLDYVP 261 (367)
Q Consensus 188 ~~~~~~~~~~~~~~~~~~~~~d~~~~~~~l~~~~~~Pv~vK~-v~~~~~a~~~~~~G~d~i~vs-----~~gg~~~~~~~ 261 (367)
..++.. ..+|+|+.|+.+.++|+ +.++++|+.++++|||+|.|+ +|+++++++..
T Consensus 134 -------------s~~~i~------~ik~ir~~~p~~~viaGNV~T~e~a~~Li~aGAD~ikVgiGpGSicttR~~~Gvg 194 (343)
T TIGR01305 134 -------------SEHFVE------FVKLVREAFPEHTIMAGNVVTGEMVEELILSGADIVKVGIGPGSVCTTRTKTGVG 194 (343)
T ss_pred -------------HHHHHH------HHHHHHhhCCCCeEEEecccCHHHHHHHHHcCCCEEEEcccCCCcccCceeCCCC
Confidence 001110 34599999987888888 899999999999999999998 78888888755
Q ss_pred -chHHHHHHHHHHhcC-CCcEEEecCCCCHHHHHHHHHcCCCEEEechHHH--------------------HHhhc----
Q 017718 262 -ATIMALEEVVKATQG-RIPVFLDGGVRRGTDVFKALALGASGIFIGRPVV--------------------YSLAA---- 315 (367)
Q Consensus 262 -~~~~~l~~i~~~~~~-~~~via~GGI~~~~dv~kal~lGAd~V~ig~~~l--------------------~~l~~---- 315 (367)
+.+++|++++++.++ ++|||+||||+++.|++|||++|||+||+|+.+. ++++.
T Consensus 195 ~pqltAv~~~a~aa~~~~v~VIaDGGIr~~gDI~KALA~GAd~VMlG~llAG~~Espg~~i~~~G~~~K~yrGMgS~~Am 274 (343)
T TIGR01305 195 YPQLSAVIECADAAHGLKGHIISDGGCTCPGDVAKAFGAGADFVMLGGMFAGHTESGGEVIERNGRKFKLFYGMSSDTAM 274 (343)
T ss_pred cCHHHHHHHHHHHhccCCCeEEEcCCcCchhHHHHHHHcCCCEEEECHhhhCcCcCcceeEeECCEEEEEEeccchHHHH
Confidence 899999999998876 7999999999999999999999999999997652 11110
Q ss_pred -------------cCh-------HHHHHHHHHHHHHHHHHHHHhCCCChhhhccc
Q 017718 316 -------------EGE-------KGVRRVLEMLREEFELAMALSGCRSLKEITRD 350 (367)
Q Consensus 316 -------------~G~-------~~v~~~i~~l~~el~~~m~~~G~~si~~l~~~ 350 (367)
+|. ..+.+++..+...|+..|.++|..++.||+..
T Consensus 275 ~~~~g~~~ry~~~EG~e~~vp~kG~v~~~l~~l~gGlrs~m~Y~Ga~~i~el~~~ 329 (343)
T TIGR01305 275 KKHAGGVAEYRASEGKTVEVPYRGDVENTILDILGGLRSACTYVGAAKLKELSKR 329 (343)
T ss_pred hhccCcccccccccCceEEeccCCcHHHHHHHHHHHHHHHhhccCcCcHHHHHhC
Confidence 111 12888999999999999999999999999643
|
A deep split separates two families of GMP reductase. This family includes both eukaryotic and some proteobacterial sequences, while the other family contains other bacterial sequences. |
| >cd02808 GltS_FMN Glutamate synthase (GltS) FMN-binding domain | Back alignment and domain information |
|---|
Probab=99.93 E-value=1.7e-24 Score=215.48 Aligned_cols=270 Identities=24% Similarity=0.240 Sum_probs=180.6
Q ss_pred CCccceeEcC-----eeeccceEeCcccchhccCChhhHHHHHHHHHcCCceeecCCCCCCHHHHHhhCCCceEEEEeec
Q 017718 58 KIDMNTTVLG-----FKISMPIMIAPTAMQKMAHPEGEYATARAASAAGTIMTLSSWSTSSVEEVASTGPGIRFFQLYVY 132 (367)
Q Consensus 58 ~vd~st~i~g-----~~l~~Pi~iAPm~~~~l~~~~~e~~~a~aa~~~G~~~~vs~~~~~~~e~i~~~~~~~~~~QLy~~ 132 (367)
.++.++++++ ..+..||+++||+++.+ .++...+++.++.+.|....+++. ..+.+++.... ....|+- .
T Consensus 59 ~~~~~~~~g~~~~~~~~i~~Pi~~~~Ms~Gs~-s~~a~~aLa~aa~~aG~~~~~Geg-g~~~~~~~~~~--~~i~q~~-~ 133 (392)
T cd02808 59 EVDDRVTIGPNAEKPLKLDSPFNISAMSFGAL-SKEAKEALAIGAALAGTASNTGEG-GELPEEREGGG--DIIKQVA-S 133 (392)
T ss_pred ccccceeeccccCCccccccceEecCCCCCcc-cHHHHHHHHHHHHhcCCceeecCC-CCCHHHHhhhh--heEEEec-C
Confidence 3444666654 45689999999997765 334567999999999999888864 45666664332 2445542 1
Q ss_pred CCHHHHHHHHHHHHHcCCcEEEEecCCCC-CCchhHHhhhhcCCCC-ccccccccccccCccccc-cchhhHHHhhhccC
Q 017718 133 KDRNVVAQLVRRAERAGFKAIALTVDTPR-LGRREADIKNRFTLPP-FLTLKNFQGLDLGKMDEA-NDSGLAAYVAGQID 209 (367)
Q Consensus 133 ~d~~~~~~~l~ra~~~G~~ai~itvd~p~-~g~r~~~~~~~~~~p~-~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~d 209 (367)
.......+.++. +++|-+-+.--. +| .|-.+|. |++.. + +.. .....++.++...+
T Consensus 134 ~~fGv~~~~~~~-----~~~ieik~~QGAkpg-------~gg~l~~~Kv~~e----i-----A~~r~~~~g~~~isp~~~ 192 (392)
T cd02808 134 GRFGVRPEYLNK-----ADAIEIKIGQGAKPG-------EGGHLPGEKVTEE----I-----AKIRGIPPGVDLISPPPH 192 (392)
T ss_pred CCCccCHHHccc-----CcEEEEEeccCCCCC-------CCCccccccCCHH----H-----HHHhCCCCCccccCCCCC
Confidence 111111112221 444444433111 00 0111221 11100 0 000 00011222333333
Q ss_pred cccc----H----HHHHhhcC-CCEEEEecCC--HHHHHHHHHcC-CcEEEEcCCCCCC--------CCCccchHHHHHH
Q 017718 210 RSLS----W----KWLQTITK-LPILVKGVLT--AEDARIAVQAG-AAGIIVSNHGARQ--------LDYVPATIMALEE 269 (367)
Q Consensus 210 ~~~~----~----~~l~~~~~-~Pv~vK~v~~--~~~a~~~~~~G-~d~i~vs~~gg~~--------~~~~~~~~~~l~~ 269 (367)
+++. | +++|+.++ +||++|++.. .+++..+.+.| +|+|+|+||+|.+ .+++.++...|++
T Consensus 193 ~~~~~~~~l~~~I~~lr~~~~~~pV~vK~~~~~~~~~~a~~~~~~g~D~I~VsG~~Ggtg~~~~~~~~~~g~pt~~~L~~ 272 (392)
T cd02808 193 HDIYSIEDLAQLIEDLREATGGKPIGVKLVAGHGEGDIAAGVAAAGADFITIDGAEGGTGAAPLTFIDHVGLPTELGLAR 272 (392)
T ss_pred CCCCCHHHHHHHHHHHHHhCCCceEEEEECCCCCHHHHHHHHHHcCCCEEEEeCCCCCCCCCcccccccCCccHHHHHHH
Confidence 4331 2 38899888 9999999964 66655555555 9999999996543 3467889999999
Q ss_pred HHHHh-----cCCCcEEEecCCCCHHHHHHHHHcCCCEEEechHHHHHhhcc----------------------------
Q 017718 270 VVKAT-----QGRIPVFLDGGVRRGTDVFKALALGASGIFIGRPVVYSLAAE---------------------------- 316 (367)
Q Consensus 270 i~~~~-----~~~~~via~GGI~~~~dv~kal~lGAd~V~ig~~~l~~l~~~---------------------------- 316 (367)
+++.+ ++++|||++|||+++.|++|+|++|||+|++||++++++.|.
T Consensus 273 v~~~~~~~~~~~~i~viasGGI~~g~Dv~kalaLGAd~V~ig~~~l~al~c~~~~~c~~~~cP~Giat~~~~~~~~~~~~ 352 (392)
T cd02808 273 AHQALVKNGLRDRVSLIASGGLRTGADVAKALALGADAVGIGTAALIALGCIQARKCHTNTCPVGVATQDPELRRRLDVE 352 (392)
T ss_pred HHHHHHHcCCCCCCeEEEECCCCCHHHHHHHHHcCCCeeeechHHHHhcchHHHHhcCCCCCCcccccCChHhhhhcCCc
Confidence 98765 247999999999999999999999999999999999988654
Q ss_pred -ChHHHHHHHHHHHHHHHHHHHHhCCCChhhhccccee
Q 017718 317 -GEKGVRRVLEMLREEFELAMALSGCRSLKEITRDHIV 353 (367)
Q Consensus 317 -G~~~v~~~i~~l~~el~~~m~~~G~~si~~l~~~~l~ 353 (367)
|.++|.++++.+.+||+.+|..+|++++++++++++.
T Consensus 353 ~~~~~v~~~~~~~~~el~~~m~~~G~~~~~~l~~~~l~ 390 (392)
T cd02808 353 GKAERVANYLKSLAEELRELAAALGKRSLELLGRSDLL 390 (392)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHhCCCChHHCCHHHhh
Confidence 6789999999999999999999999999999988764
|
GltS is a complex iron-sulfur flavoprotein that catalyzes the reductive synthesis of L-glutamate from 2-oxoglutarate and L-glutamine via intramolecular channelling of ammonia, a reaction in the plant, yeast and bacterial pathway for ammonia assimilation. It is a multifunctional enzyme that functions through three distinct active centers, carrying out L-glutamine hydrolysis, conversion of 2-oxoglutarate into L-glutamate, and electron uptake from an electron donor. |
| >TIGR01304 IMP_DH_rel_2 IMP dehydrogenase family protein | Back alignment and domain information |
|---|
Probab=99.93 E-value=2.7e-25 Score=217.82 Aligned_cols=287 Identities=21% Similarity=0.257 Sum_probs=181.9
Q ss_pred hccccceeecc-ccCCCCCCccceeEcCeeeccceEeCcccchhccCChhhHHHHHHHHHcCCceeecCC----CCCCHH
Q 017718 41 NAFSRILFRPR-ILIDVSKIDMNTTVLGFKISMPIMIAPTAMQKMAHPEGEYATARAASAAGTIMTLSSW----STSSVE 115 (367)
Q Consensus 41 ~~~~~i~l~pr-~l~~~~~vd~st~i~g~~l~~Pi~iAPm~~~~l~~~~~e~~~a~aa~~~G~~~~vs~~----~~~~~e 115 (367)
-.||+|.|+|. .-++.++|||++++.+++++.||+.|||++.+ +.+|+.+|+++|..-+++.. .....+
T Consensus 13 ~~~d~i~~vp~~~t~~~~~v~~~~~i~~~~l~~PivlAPMagVt------d~~fr~~~~~~Galgvvsaegl~~~~~~~~ 86 (369)
T TIGR01304 13 YSLDDISVVPSRRTRSSKDVDTAWQIDAYRFELPFIAHPMDALV------SPEFAIELGELGGLGVLNLEGLWGRHEDPD 86 (369)
T ss_pred CCcceEEEcCCCCCCChhhccceeEEcceecCCceeecCCCccc------CHHHHHHHHHcCCcccccchHHHhcCCCHH
Confidence 37999999995 55788999999999999999999999998875 78999999999996666531 112222
Q ss_pred HHH----hhCCC-------ceEEEEee-cCCHHHHHHHHHHHHHcCCcEEEEecCCCCCCchhHHhhhhcCCCCcccccc
Q 017718 116 EVA----STGPG-------IRFFQLYV-YKDRNVVAQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLTLKN 183 (367)
Q Consensus 116 ~i~----~~~~~-------~~~~QLy~-~~d~~~~~~~l~ra~~~G~~ai~itvd~p~~g~r~~~~~~~~~~p~~~~~~~ 183 (367)
.+. ..... ....++|. ..+++.+.++++.+++++.. +-+.++ |. ...++.... ...+
T Consensus 87 ~~~~QI~g~~~~~~~a~aa~~~~e~~~~~~~p~l~~~ii~~vr~a~Vt-vkiRl~-~~---~~~e~a~~l------~eAG 155 (369)
T TIGR01304 87 PAIAKIAEAYEEGDQAAATRLLQELHAAPLKPELLGERIAEVRDSGVI-TAVRVS-PQ---NAREIAPIV------VKAG 155 (369)
T ss_pred HHHHHHhhcCCChHHHHHHHHHHHcCCCccChHHHHHHHHHHHhcceE-EEEecC-Cc---CHHHHHHHH------HHCC
Confidence 211 10000 00111211 23556666666666665411 112221 10 000010000 0000
Q ss_pred ccccccCccccccchhhHHHhhhccCccccHH---HHHhhcCCCEEEEecCCHHHHHHHHHcCCcEEEEcCCCCCC----
Q 017718 184 FQGLDLGKMDEANDSGLAAYVAGQIDRSLSWK---WLQTITKLPILVKGVLTAEDARIAVQAGAAGIIVSNHGARQ---- 256 (367)
Q Consensus 184 ~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~---~l~~~~~~Pv~vK~v~~~~~a~~~~~~G~d~i~vs~~gg~~---- 256 (367)
.+.+ ....+ -..+++... .-+|. .+++..++||+++++.+.++|+.+.++|+|+|.++.+|+..
T Consensus 156 ad~I---~ihgr--t~~q~~~sg----~~~p~~l~~~i~~~~IPVI~G~V~t~e~A~~~~~aGaDgV~~G~gg~~~~~~~ 226 (369)
T TIGR01304 156 ADLL---VIQGT--LVSAEHVST----SGEPLNLKEFIGELDVPVIAGGVNDYTTALHLMRTGAAGVIVGPGGANTTRLV 226 (369)
T ss_pred CCEE---EEecc--chhhhccCC----CCCHHHHHHHHHHCCCCEEEeCCCCHHHHHHHHHcCCCEEEECCCCCcccccc
Confidence 0000 00000 000111111 11343 56666799999988999999999999999999955444322
Q ss_pred CCCccchHHHHHHHHHHh-------cC-CCcEEEecCCCCHHHHHHHHHcCCCEEEechHHHHHhhccCh----------
Q 017718 257 LDYVPATIMALEEVVKAT-------QG-RIPVFLDGGVRRGTDVFKALALGASGIFIGRPVVYSLAAEGE---------- 318 (367)
Q Consensus 257 ~~~~~~~~~~l~~i~~~~-------~~-~~~via~GGI~~~~dv~kal~lGAd~V~ig~~~l~~l~~~G~---------- 318 (367)
+..+.+....+.++.++. ++ .+|||++|||+++.|++|+|++|||+||+|++|+.+..+.|.
T Consensus 227 lg~~~p~~~ai~d~~~a~~~~~~e~g~r~vpVIAdGGI~tg~di~kAlAlGAdaV~iGt~~a~a~Eapg~~~~w~~~~~~ 306 (369)
T TIGR01304 227 LGIEVPMATAIADVAAARRDYLDETGGRYVHVIADGGIETSGDLVKAIACGADAVVLGSPLARAAEAPGRGYFWPAAAAH 306 (369)
T ss_pred cCCCCCHHHHHHHHHHHHHHHHHhcCCCCceEEEeCCCCCHHHHHHHHHcCCCEeeeHHHHHhhhcCCCCCCccchhhcC
Confidence 223567777887776442 22 499999999999999999999999999999999875443211
Q ss_pred -------------HH----HHHHH----------HHHHHHHHHHHHHhCCCChhhhccccee
Q 017718 319 -------------KG----VRRVL----------EMLREEFELAMALSGCRSLKEITRDHIV 353 (367)
Q Consensus 319 -------------~~----v~~~i----------~~l~~el~~~m~~~G~~si~~l~~~~l~ 353 (367)
.| +++++ .+|...|++.|..+|+.+++|+++..+.
T Consensus 307 ~~~~~~~~~~~~~~~~~~~~~~~~~gp~~~~~~~~n~~g~~~~~~~~~g~~~~~~~~~~~~~ 368 (369)
T TIGR01304 307 PRLPRGVVTESGTVGEAPTLEEILHGPSTLPDGVENFEGGLKRAMAKCGYTDLKEFQKVSLT 368 (369)
T ss_pred ccCCccccccccccCCCCcHHHHeeCCCCCCcchhhhHHHHHHHHHHcCchhhhhhhhccee
Confidence 12 44554 4688899999999999999999987654
|
This model represents a family of proteins, often annotated as a putative IMP dehydrogenase, related to IMP dehydrogenase and GMP reductase. Most species with a member of this family belong to the high GC Gram-positive bacteria, and these also have the IMP dehydrogenase described by TIGRFAMs equivalog model TIGR01302. |
| >PRK08649 inosine 5-monophosphate dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=99.93 E-value=1.6e-24 Score=212.89 Aligned_cols=284 Identities=20% Similarity=0.283 Sum_probs=182.7
Q ss_pred ccccceeeccccC--CCCCCccceeEcCeeeccceEeCcccchhccCChhhHHHHHHHHHcCCceeecCC----CCCCHH
Q 017718 42 AFSRILFRPRILI--DVSKIDMNTTVLGFKISMPIMIAPTAMQKMAHPEGEYATARAASAAGTIMTLSSW----STSSVE 115 (367)
Q Consensus 42 ~~~~i~l~pr~l~--~~~~vd~st~i~g~~l~~Pi~iAPm~~~~l~~~~~e~~~a~aa~~~G~~~~vs~~----~~~~~e 115 (367)
.||++.|+|. ++ +.+++|+++.+.++.++.||+++||.+.+ +..++.+++++|...+++.. ...+.+
T Consensus 17 ~fddV~lvp~-~~~~~~~dvdls~~~~~~~i~~Piv~a~M~gVt------~~~la~avs~~GglGvl~~~gl~~~~~~~e 89 (368)
T PRK08649 17 GLDEIAIVPS-RRTRDPEDVSTSWQIDAYRFEIPIIASPMDAVV------SPETAIELGKLGGLGVLNLEGLWTRYEDPE 89 (368)
T ss_pred CcceEEEeCC-CCCCCHHHceeeeeecceeccCcEeccCCcccC------CHHHHHHHHhCCCceEEeeccccccCCCHH
Confidence 6999999998 54 55789999999999999999999997764 77999999999986666521 122344
Q ss_pred HHHhh----CCC---ceEEEEe-ecCCHHHHHHHHHHHHHcCCcEEEEecCC-CCCCchhHHhhhhcCCCCccccccccc
Q 017718 116 EVAST----GPG---IRFFQLY-VYKDRNVVAQLVRRAERAGFKAIALTVDT-PRLGRREADIKNRFTLPPFLTLKNFQG 186 (367)
Q Consensus 116 ~i~~~----~~~---~~~~QLy-~~~d~~~~~~~l~ra~~~G~~ai~itvd~-p~~g~r~~~~~~~~~~p~~~~~~~~~~ 186 (367)
++... .+. ...-++| .+.+++.+.++++.+++++ +.+.+.. |. ...++.... ...+.+.
T Consensus 90 ~l~~qi~~~~~~~~~~~~~~~~~~P~~p~l~~~iv~~~~~~~---V~v~vr~~~~---~~~e~a~~l------~eaGvd~ 157 (368)
T PRK08649 90 PILDEIASLGKDEATRLMQELYAEPIKPELITERIAEIRDAG---VIVAVSLSPQ---RAQELAPTV------VEAGVDL 157 (368)
T ss_pred HHHHHHHhcCcHHHHHHHHHhhcCCCCHHHHHHHHHHHHhCe---EEEEEecCCc---CHHHHHHHH------HHCCCCE
Confidence 43321 110 0001111 1345666666666666653 2222211 00 000000000 0000000
Q ss_pred cccCccccccch-hhHHHhhhccCccccHH---HHHhhcCCCEEEEecCCHHHHHHHHHcCCcEEEEcCCCCC------C
Q 017718 187 LDLGKMDEANDS-GLAAYVAGQIDRSLSWK---WLQTITKLPILVKGVLTAEDARIAVQAGAAGIIVSNHGAR------Q 256 (367)
Q Consensus 187 ~~~~~~~~~~~~-~~~~~~~~~~d~~~~~~---~l~~~~~~Pv~vK~v~~~~~a~~~~~~G~d~i~vs~~gg~------~ 256 (367)
+. . .+. ..+.|.. ..-+|. .+++..++||+++.+.+.++|+.+.++|||+|.+..++|+ .
T Consensus 158 I~---v---hgrt~~~~h~~----~~~~~~~i~~~ik~~~ipVIaG~V~t~e~A~~l~~aGAD~V~VG~G~Gs~~~t~~~ 227 (368)
T PRK08649 158 FV---I---QGTVVSAEHVS----KEGEPLNLKEFIYELDVPVIVGGCVTYTTALHLMRTGAAGVLVGIGPGAACTSRGV 227 (368)
T ss_pred EE---E---eccchhhhccC----CcCCHHHHHHHHHHCCCCEEEeCCCCHHHHHHHHHcCCCEEEECCCCCcCCCCccc
Confidence 00 0 000 0011111 111343 4444578999998899999999999999999999644442 1
Q ss_pred CCCccchHHHHHHHHHHhc--------CCCcEEEecCCCCHHHHHHHHHcCCCEEEechHHHHHhhcc------------
Q 017718 257 LDYVPATIMALEEVVKATQ--------GRIPVFLDGGVRRGTDVFKALALGASGIFIGRPVVYSLAAE------------ 316 (367)
Q Consensus 257 ~~~~~~~~~~l~~i~~~~~--------~~~~via~GGI~~~~dv~kal~lGAd~V~ig~~~l~~l~~~------------ 316 (367)
...+.+.+..+.++++..+ .++|||++|||+++.|++|||++|||+||+|++|.-...+.
T Consensus 228 ~g~g~p~~~ai~~~~~a~~~~l~~~~~~~vpVIAdGGI~~~~diakAlalGAd~Vm~Gs~fa~t~Espg~~~~~gm~s~~ 307 (368)
T PRK08649 228 LGIGVPMATAIADVAAARRDYLDETGGRYVHVIADGGIGTSGDIAKAIACGADAVMLGSPLARAAEAPGRGWHWGMAAPH 307 (368)
T ss_pred CCCCcCHHHHHHHHHHHHHHhhhhhcCCCCeEEEeCCCCCHHHHHHHHHcCCCeecccchhcccccCCCcccccCcccCC
Confidence 2336778888888765421 15999999999999999999999999999999986533221
Q ss_pred -----Ch-------HHHHHHHH----------HHHHHHHHHHHHhCCCChhhhcccceee
Q 017718 317 -----GE-------KGVRRVLE----------MLREEFELAMALSGCRSLKEITRDHIVT 354 (367)
Q Consensus 317 -----G~-------~~v~~~i~----------~l~~el~~~m~~~G~~si~~l~~~~l~~ 354 (367)
|. ..+.+++. ++...|+..|.++|+++|.||++..++.
T Consensus 308 ~~~~eg~~~~~~~~g~~~~~~~~~~~~~~~~~~~~g~l~~~m~~~g~~~~~~~~~~~~~~ 367 (368)
T PRK08649 308 PSLPRGTRIKVGTTGSLEQILFGPSHLPDGTHNLVGALRRSMATLGYSDLKEFQKVEVVV 367 (368)
T ss_pred CcCCCceEEeCCCcCcHHHHhcCcccccchHHHHHHHHHHHHHhcCCCcHHHHhhcCeEe
Confidence 11 13777877 9999999999999999999999876653
|
|
| >cd00381 IMPDH IMPDH: The catalytic domain of the inosine monophosphate dehydrogenase | Back alignment and domain information |
|---|
Probab=99.91 E-value=4.3e-23 Score=200.64 Aligned_cols=255 Identities=24% Similarity=0.318 Sum_probs=187.0
Q ss_pred ccccceeecccc-CCCCCCccceeEcC-eeeccceEeCcccchhccCChhhHHHHHHHHHcCCceeecCCCCCCHHHHHh
Q 017718 42 AFSRILFRPRIL-IDVSKIDMNTTVLG-FKISMPIMIAPTAMQKMAHPEGEYATARAASAAGTIMTLSSWSTSSVEEVAS 119 (367)
Q Consensus 42 ~~~~i~l~pr~l-~~~~~vd~st~i~g-~~l~~Pi~iAPm~~~~l~~~~~e~~~a~aa~~~G~~~~vs~~~~~~~e~i~~ 119 (367)
.||++.|+|... .+.++||++|.|.+ ..++.||+.|||.+.+ +..++.+.+++|...++... .+.+++.+
T Consensus 3 ~~ddv~l~p~~~~~~~~~vdl~t~l~~~~~l~~Piv~apM~~vt------~~~ma~ava~~GglGvi~~~--~~~~~~~~ 74 (325)
T cd00381 3 TFDDVLLVPGYSTVLPSEVDLSTKLTKNITLNIPLVSAPMDTVT------ESEMAIAMARLGGIGVIHRN--MSIEEQAE 74 (325)
T ss_pred CcccEEEeCCCCCCCHHHceeeEEecCccccCCCEEecCCCcCC------cHHHHHHHHHCCCEEEEeCC--CCHHHHHH
Confidence 599999999764 46788999999988 8899999999998764 67899999999987666532 34454432
Q ss_pred ---hCCCc-eEEEEeecCCHHHHHHHHHHHHHcCCcEEEEecCCCCCCchhHHhhhhcCCCCccccccccccccCccccc
Q 017718 120 ---TGPGI-RFFQLYVYKDRNVVAQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLTLKNFQGLDLGKMDEA 195 (367)
Q Consensus 120 ---~~~~~-~~~QLy~~~d~~~~~~~l~ra~~~G~~ai~itvd~p~~g~r~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~ 195 (367)
....+ ...+.. +.+++ ..+.++.+.++|++.|+++.-.. ..
T Consensus 75 ~i~~vk~~l~v~~~~-~~~~~-~~~~~~~l~eagv~~I~vd~~~G---~~------------------------------ 119 (325)
T cd00381 75 EVRKVKGRLLVGAAV-GTRED-DKERAEALVEAGVDVIVIDSAHG---HS------------------------------ 119 (325)
T ss_pred HHHHhccCceEEEec-CCChh-HHHHHHHHHhcCCCEEEEECCCC---Cc------------------------------
Confidence 11222 222332 33333 34566677778999888754210 00
Q ss_pred cchhhHHHhhhccCcccc-HHHHHhhcC-CCEEEEecCCHHHHHHHHHcCCcEEEEcCCCCC------CCCCccchHHHH
Q 017718 196 NDSGLAAYVAGQIDRSLS-WKWLQTITK-LPILVKGVLTAEDARIAVQAGAAGIIVSNHGAR------QLDYVPATIMAL 267 (367)
Q Consensus 196 ~~~~~~~~~~~~~d~~~~-~~~l~~~~~-~Pv~vK~v~~~~~a~~~~~~G~d~i~vs~~gg~------~~~~~~~~~~~l 267 (367)
+...+ ++++|+..+ +||++..+.+.++|+.+.++|+|+|+++..+|. ....+.+.+..+
T Consensus 120 -------------~~~~~~i~~ik~~~p~v~Vi~G~v~t~~~A~~l~~aGaD~I~vg~g~G~~~~t~~~~g~g~p~~~~i 186 (325)
T cd00381 120 -------------VYVIEMIKFIKKKYPNVDVIAGNVVTAEAARDLIDAGADGVKVGIGPGSICTTRIVTGVGVPQATAV 186 (325)
T ss_pred -------------HHHHHHHHHHHHHCCCceEEECCCCCHHHHHHHHhcCCCEEEECCCCCcCcccceeCCCCCCHHHHH
Confidence 00011 237777664 889888889999999999999999999543222 134577889999
Q ss_pred HHHHHHhcC-CCcEEEecCCCCHHHHHHHHHcCCCEEEechHHHHHhhcc------------------------------
Q 017718 268 EEVVKATQG-RIPVFLDGGVRRGTDVFKALALGASGIFIGRPVVYSLAAE------------------------------ 316 (367)
Q Consensus 268 ~~i~~~~~~-~~~via~GGI~~~~dv~kal~lGAd~V~ig~~~l~~l~~~------------------------------ 316 (367)
.++.+.+.. ++|||++|||+++.|++|+|++||++||+||.|+-...+.
T Consensus 187 ~~v~~~~~~~~vpVIA~GGI~~~~di~kAla~GA~~VmiGt~fa~t~Es~g~~~~~~g~~~~~~~g~~s~~~~~~~~~~~ 266 (325)
T cd00381 187 ADVAAAARDYGVPVIADGGIRTSGDIVKALAAGADAVMLGSLLAGTDESPGEYIEINGKRYKEYRGMGSLGAMKKGGGDR 266 (325)
T ss_pred HHHHHHHhhcCCcEEecCCCCCHHHHHHHHHcCCCEEEecchhcccccCCCcEEEECCeeeeeEecccchhhhhcCcccc
Confidence 988876643 6999999999999999999999999999999885321110
Q ss_pred ------------Ch-------HHHHHHHHHHHHHHHHHHHHhCCCChhhhcccce
Q 017718 317 ------------GE-------KGVRRVLEMLREEFELAMALSGCRSLKEITRDHI 352 (367)
Q Consensus 317 ------------G~-------~~v~~~i~~l~~el~~~m~~~G~~si~~l~~~~l 352 (367)
|. ..+.+++..+...|+..|.++|+.+|.||+....
T Consensus 267 ~~~~~~~~~~~eg~~~~v~~~g~~~~~~~~~~~glr~~~~y~G~~~l~~~~~~~~ 321 (325)
T cd00381 267 YFGEEAKKLVPEGVEGIVPYKGSVKDVLPQLVGGLRSSMGYCGAKSLKELQEKAR 321 (325)
T ss_pred ccccccccccCCceEEEEecCCcHHHHHHHHHHHHHHHHHhcCCCcHHHHHhcCe
Confidence 10 1388899999999999999999999999997643
|
IMPDH catalyzes the NAD-dependent oxidation of inosine 5'-monophosphate (IMP) to xanthosine 5' monophosphate (XMP). It is a rate-limiting step in the de novo synthesis of the guanine nucleotides. There is often a CBS domain inserted in the middle of this domain, which is proposed to play a regulatory role. IMPDH is a key enzyme in the regulation of cell proliferation and differentiation. It has been identified as an attractive target for developing chemotherapeutic agents. |
| >TIGR01037 pyrD_sub1_fam dihydroorotate dehydrogenase (subfamily 1) family protein | Back alignment and domain information |
|---|
Probab=99.91 E-value=1.3e-22 Score=195.43 Aligned_cols=235 Identities=23% Similarity=0.325 Sum_probs=168.7
Q ss_pred cceeEcCeeeccceEeCcccchhccCChhhHHHHHHHHHcCCceeec-C--------------------C------CCCC
Q 017718 61 MNTTVLGFKISMPIMIAPTAMQKMAHPEGEYATARAASAAGTIMTLS-S--------------------W------STSS 113 (367)
Q Consensus 61 ~st~i~g~~l~~Pi~iAPm~~~~l~~~~~e~~~a~aa~~~G~~~~vs-~--------------------~------~~~~ 113 (367)
++|+|+|.++++||++||...+. +....+.+.+.|..+++. | + .+..
T Consensus 1 l~~~~~g~~l~npi~~aag~~~~------~~~~~~~~~~~G~g~iv~kt~~~~~~~gn~~pr~~~~~~~~~n~~gl~~~g 74 (300)
T TIGR01037 1 LEVELFGIRFKNPLILASGIMGS------GVESLRRIDRSGAGAVVTKSIGLEPRPGYRNPTIVETPCGMLNAIGLQNPG 74 (300)
T ss_pred CcEEECCEECCCCCEeCCcCCCC------CHHHHHHHHHcCCcEEEeCccccccccCCCCCeEEecccHHhhhccCCCcC
Confidence 47899999999999999943211 223344455568887765 1 1 1112
Q ss_pred HHH----HHhh---CCCceEEEEeecCCHHHHHHHHHHHHHcC--CcEEEEecCCCCCCchhHHhhhhcCCCCccccccc
Q 017718 114 VEE----VAST---GPGIRFFQLYVYKDRNVVAQLVRRAERAG--FKAIALTVDTPRLGRREADIKNRFTLPPFLTLKNF 184 (367)
Q Consensus 114 ~e~----i~~~---~~~~~~~QLy~~~d~~~~~~~l~ra~~~G--~~ai~itvd~p~~g~r~~~~~~~~~~p~~~~~~~~ 184 (367)
.+. +... .+.|..+||+ ..+.+.+.+.++.+++++ ++++.+|+.||....| +.
T Consensus 75 ~~~~~~~~~~~~~~~~~pl~~qi~-g~~~~~~~~~a~~~~~~~~~~d~ielN~~cP~~~~~------g~----------- 136 (300)
T TIGR01037 75 VEAFLEELKPVREEFPTPLIASVY-GSSVEEFAEVAEKLEKAPPYVDAYELNLSCPHVKGG------GI----------- 136 (300)
T ss_pred HHHHHHHHHHHhccCCCcEEEEee-cCCHHHHHHHHHHHHhccCccCEEEEECCCCCCCCC------cc-----------
Confidence 222 2111 1247899997 678888888999998863 9999999999974110 00
Q ss_pred cccccCccccccchhhHHHhhhccCccccH---HHHHhhcCCCEEEEecCCH----HHHHHHHHcCCcEEEEcCC-CCCC
Q 017718 185 QGLDLGKMDEANDSGLAAYVAGQIDRSLSW---KWLQTITKLPILVKGVLTA----EDARIAVQAGAAGIIVSNH-GARQ 256 (367)
Q Consensus 185 ~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~---~~l~~~~~~Pv~vK~v~~~----~~a~~~~~~G~d~i~vs~~-gg~~ 256 (367)
.+.. ++++.+ +++|+.+++||++|+..+. +.++.+.++|+|+|+++|+ .++.
T Consensus 137 ------------------~l~~--~~~~~~eiv~~vr~~~~~pv~vKi~~~~~~~~~~a~~l~~~G~d~i~v~nt~~~~~ 196 (300)
T TIGR01037 137 ------------------AIGQ--DPELSADVVKAVKDKTDVPVFAKLSPNVTDITEIAKAAEEAGADGLTLINTLRGMK 196 (300)
T ss_pred ------------------cccc--CHHHHHHHHHHHHHhcCCCEEEECCCChhhHHHHHHHHHHcCCCEEEEEccCCccc
Confidence 0000 222322 3888888999999998654 4478899999999999874 2211
Q ss_pred C------------C---Cccc----hHHHHHHHHHHhcCCCcEEEecCCCCHHHHHHHHHcCCCEEEechHHHHHhhccC
Q 017718 257 L------------D---YVPA----TIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFIGRPVVYSLAAEG 317 (367)
Q Consensus 257 ~------------~---~~~~----~~~~l~~i~~~~~~~~~via~GGI~~~~dv~kal~lGAd~V~ig~~~l~~l~~~G 317 (367)
. . .+++ .++.+.++++.+ ++|||++|||++++|+.++|.+|||+||+||++++. +
T Consensus 197 ~~~~~~~~~~~~~~gg~sg~~~~~~~l~~v~~i~~~~--~ipvi~~GGI~s~~da~~~l~~GAd~V~igr~~l~~----p 270 (300)
T TIGR01037 197 IDIKTGKPILANKTGGLSGPAIKPIALRMVYDVYKMV--DIPIIGVGGITSFEDALEFLMAGASAVQVGTAVYYR----G 270 (300)
T ss_pred cccccCceeeCCCCccccchhhhHHHHHHHHHHHhcC--CCCEEEECCCCCHHHHHHHHHcCCCceeecHHHhcC----c
Confidence 1 1 1222 346777777766 699999999999999999999999999999999862 3
Q ss_pred hHHHHHHHHHHHHHHHHHHHHhCCCChhhhccc
Q 017718 318 EKGVRRVLEMLREEFELAMALSGCRSLKEITRD 350 (367)
Q Consensus 318 ~~~v~~~i~~l~~el~~~m~~~G~~si~~l~~~ 350 (367)
.++..++++|..+|+..|+++++|+.+.
T Consensus 271 -----~~~~~i~~~l~~~~~~~g~~~~~e~~g~ 298 (300)
T TIGR01037 271 -----FAFKKIIEGLIAFLKAEGFTSIEELIGI 298 (300)
T ss_pred -----hHHHHHHHHHHHHHHHcCCCCHHHHhCc
Confidence 3788999999999999999999999864
|
This family includes subfamily 1 dihydroorotate dehydrogenases while excluding the closely related subfamily 2 (TIGR01036). This family also includes a number of uncharacterized proteins and a domain of dihydropyrimidine dehydrogenase. The uncharacterized proteins might all be dihydroorotate dehydrogenase. |
| >cd04739 DHOD_like Dihydroorotate dehydrogenase (DHOD) like proteins | Back alignment and domain information |
|---|
Probab=99.91 E-value=6.4e-22 Score=192.60 Aligned_cols=238 Identities=20% Similarity=0.247 Sum_probs=169.0
Q ss_pred ccceeEcCeeeccceEeCcccchhccCChhhHHHHHHHHHcCCceeec-CCCC---------------------------
Q 017718 60 DMNTTVLGFKISMPIMIAPTAMQKMAHPEGEYATARAASAAGTIMTLS-SWST--------------------------- 111 (367)
Q Consensus 60 d~st~i~g~~l~~Pi~iAPm~~~~l~~~~~e~~~a~aa~~~G~~~~vs-~~~~--------------------------- 111 (367)
|++|+++|.++++||++|.-+... +....+.+...|..+++. |...
T Consensus 1 dL~v~~~Gl~l~nPv~~ASg~~~~------~~e~~~~~~~~G~Gavv~ktit~~~~~~~gn~~pr~~~~~~~~~~~~~~i 74 (325)
T cd04739 1 DLSTTYLGLSLKNPLVASASPLSR------NLDNIRRLEDAGAGAIVLPSLFEEQIEREAQELDRFLTYGSSFAEALSYF 74 (325)
T ss_pred CceEEECCEecCCCCEeCCcCCCC------CHHHHHHHHHCCCcEEEecccchhhhhhcCCCCCceEeecccCcCccccc
Confidence 689999999999999998643322 344555577888776652 2110
Q ss_pred -------CCHH----HHHhh---CCCceEEEEeecCCHHHHHHHHHHHHHcCCcEEEEecCCCCCCchhHHhhhhcCCCC
Q 017718 112 -------SSVE----EVAST---GPGIRFFQLYVYKDRNVVAQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFTLPP 177 (367)
Q Consensus 112 -------~~~e----~i~~~---~~~~~~~QLy~~~d~~~~~~~l~ra~~~G~~ai~itvd~p~~g~r~~~~~~~~~~p~ 177 (367)
..++ ++.+. ...|.+.|+. ..+.+...+.+++++++|++++.+|+.||.. + |
T Consensus 75 n~~g~~n~g~~~~~~~i~~~~~~~~~pvi~si~-g~~~~~~~~~a~~~~~~gad~iElN~s~~~~--~----------~- 140 (325)
T cd04739 75 PEYGRYNLGPEEYLELIRRAKRAVSIPVIASLN-GVSAGGWVDYARQIEEAGADALELNIYALPT--D----------P- 140 (325)
T ss_pred ccccccCcCHHHHHHHHHHHHhccCCeEEEEeC-CCCHHHHHHHHHHHHhcCCCEEEEeCCCCCC--C----------C-
Confidence 0111 22221 1256788986 5677777889999999999999999998531 0 0
Q ss_pred ccccccccccccCccccccchhhHHHhhhccCcccc-HHHHHhhcCCCEEEEecCC----HHHHHHHHHcCCcEEEEcCC
Q 017718 178 FLTLKNFQGLDLGKMDEANDSGLAAYVAGQIDRSLS-WKWLQTITKLPILVKGVLT----AEDARIAVQAGAAGIIVSNH 252 (367)
Q Consensus 178 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~-~~~l~~~~~~Pv~vK~v~~----~~~a~~~~~~G~d~i~vs~~ 252 (367)
+. . +.... +.-.. .+++++.+++||++|+..+ .+.++.+.++|+|+|+++|+
T Consensus 141 ~~--~--------------g~~~~-------~~~~eiv~~v~~~~~iPv~vKl~p~~~~~~~~a~~l~~~Gadgi~~~nt 197 (325)
T cd04739 141 DI--S--------------GAEVE-------QRYLDILRAVKSAVTIPVAVKLSPFFSALAHMAKQLDAAGADGLVLFNR 197 (325)
T ss_pred Cc--c--------------cchHH-------HHHHHHHHHHHhccCCCEEEEcCCCccCHHHHHHHHHHcCCCeEEEEcC
Confidence 00 0 00000 00011 1378888899999999854 35688899999999999996
Q ss_pred CC-CCCC---------C---cc----chHHHHHHHHHHhcCCCcEEEecCCCCHHHHHHHHHcCCCEEEechHHHHHhhc
Q 017718 253 GA-RQLD---------Y---VP----ATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFIGRPVVYSLAA 315 (367)
Q Consensus 253 gg-~~~~---------~---~~----~~~~~l~~i~~~~~~~~~via~GGI~~~~dv~kal~lGAd~V~ig~~~l~~l~~ 315 (367)
.. ...+ + |+ -.++.+.++++.+ ++|||++|||+|++|+.++|.+|||+||+||++++
T Consensus 198 ~~~~~id~~~~~~~~~~glSG~~~~~~al~~v~~v~~~~--~ipIig~GGI~s~~Da~e~l~aGA~~Vqv~ta~~~---- 271 (325)
T cd04739 198 FYQPDIDLETLEVVPNLLLSSPAEIRLPLRWIAILSGRV--KASLAASGGVHDAEDVVKYLLAGADVVMTTSALLR---- 271 (325)
T ss_pred cCCCCccccccceecCCCcCCccchhHHHHHHHHHHccc--CCCEEEECCCCCHHHHHHHHHcCCCeeEEehhhhh----
Confidence 42 1111 1 11 2345666666655 79999999999999999999999999999999987
Q ss_pred cChHHHHHHHHHHHHHHHHHHHHhCCCChhhhccc
Q 017718 316 EGEKGVRRVLEMLREEFELAMALSGCRSLKEITRD 350 (367)
Q Consensus 316 ~G~~~v~~~i~~l~~el~~~m~~~G~~si~~l~~~ 350 (367)
+|+. ++..+.+||+.+|...|+++++|+++.
T Consensus 272 ~gp~----~~~~i~~~L~~~l~~~g~~~i~e~~G~ 302 (325)
T cd04739 272 HGPD----YIGTLLAGLEAWMEEHGYESVQQLRGS 302 (325)
T ss_pred cCch----HHHHHHHHHHHHHHHcCCCCHHHHhcc
Confidence 3664 778899999999999999999999984
|
DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences and cellular location. Members of class 1 are cytosolic enzymes and multimers while class 2 enzymes are membrane associated and monomeric. The class 1 enzymes can be further divided into subtypes 1A and 1B which are homodimers and heterotetrameric proteins, respectively. This subgroup has the conserved FMN binding site, but lacks some catalytic residues and may therefore be inactive. |
| >PRK07259 dihydroorotate dehydrogenase 1B; Reviewed | Back alignment and domain information |
|---|
Probab=99.90 E-value=1e-21 Score=189.43 Aligned_cols=236 Identities=21% Similarity=0.262 Sum_probs=174.2
Q ss_pred ccceeEcCeeeccceEeCcccchhccCChhhHHHHHHHHHcCCceee-cCCCC--------------------------C
Q 017718 60 DMNTTVLGFKISMPIMIAPTAMQKMAHPEGEYATARAASAAGTIMTL-SSWST--------------------------S 112 (367)
Q Consensus 60 d~st~i~g~~l~~Pi~iAPm~~~~l~~~~~e~~~a~aa~~~G~~~~v-s~~~~--------------------------~ 112 (367)
|++|+++|+++++||++|+-... .+..+++.+.+.|..+++ .|... .
T Consensus 1 ~l~~~~~G~~~~nPv~~aag~~~------~~~~~~~~~~~~g~g~v~~kti~~~~~~g~~~pr~~~~~~~~~n~~g~~~~ 74 (301)
T PRK07259 1 RLSVELPGLKLKNPVMPASGTFG------FGGEYARFYDLNGLGAIVTKSTTLEPREGNPTPRIAETPGGMLNAIGLQNP 74 (301)
T ss_pred CCceEECCEECCCCcEECCcCCC------CCHHHHHHhhhcCCcEEEeCCCCCCCCCCCCCCcEEecCCceeecCCCCCc
Confidence 68999999999999999983222 244678888888888765 33311 1
Q ss_pred CHHH----HHhh---CCCceEEEEeecCCHHHHHHHHHHHHHcC-CcEEEEecCCCCCCchhHHhhhhcCCCCccccccc
Q 017718 113 SVEE----VAST---GPGIRFFQLYVYKDRNVVAQLVRRAERAG-FKAIALTVDTPRLGRREADIKNRFTLPPFLTLKNF 184 (367)
Q Consensus 113 ~~e~----i~~~---~~~~~~~QLy~~~d~~~~~~~l~ra~~~G-~~ai~itvd~p~~g~r~~~~~~~~~~p~~~~~~~~ 184 (367)
..+. +.+. ...|..+||. ..+.+...+.+++++++| +++|.+|+.||....- +. .
T Consensus 75 g~~~~~~~~~~~~~~~~~p~i~si~-g~~~~~~~~~a~~~~~aG~~D~iElN~~cP~~~~g------g~------~---- 137 (301)
T PRK07259 75 GVDAFIEEELPWLEEFDTPIIANVA-GSTEEEYAEVAEKLSKAPNVDAIELNISCPNVKHG------GM------A---- 137 (301)
T ss_pred CHHHHHHHHHHHHhccCCcEEEEec-cCCHHHHHHHHHHHhccCCcCEEEEECCCCCCCCC------cc------c----
Confidence 1222 2221 1257889986 567888899999999999 9999999999973100 00 0
Q ss_pred cccccCccccccchhhHHHhhhccCccccH---HHHHhhcCCCEEEEecCCH----HHHHHHHHcCCcEEEEcCCC-CCC
Q 017718 185 QGLDLGKMDEANDSGLAAYVAGQIDRSLSW---KWLQTITKLPILVKGVLTA----EDARIAVQAGAAGIIVSNHG-ARQ 256 (367)
Q Consensus 185 ~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~---~~l~~~~~~Pv~vK~v~~~----~~a~~~~~~G~d~i~vs~~g-g~~ 256 (367)
+. .++.+.+ +++|+.+++||++|+..+. +.++.+.++|+|+|+++|.. |..
T Consensus 138 -------------------~~--~~~~~~~eiv~~vr~~~~~pv~vKl~~~~~~~~~~a~~l~~~G~d~i~~~nt~~g~~ 196 (301)
T PRK07259 138 -------------------FG--TDPELAYEVVKAVKEVVKVPVIVKLTPNVTDIVEIAKAAEEAGADGLSLINTLKGMA 196 (301)
T ss_pred -------------------cc--cCHHHHHHHHHHHHHhcCCCEEEEcCCCchhHHHHHHHHHHcCCCEEEEEccccccc
Confidence 00 0223322 3888888999999998654 34788999999999997731 110
Q ss_pred --C-------------CCc----cchHHHHHHHHHHhcCCCcEEEecCCCCHHHHHHHHHcCCCEEEechHHHHHhhccC
Q 017718 257 --L-------------DYV----PATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFIGRPVVYSLAAEG 317 (367)
Q Consensus 257 --~-------------~~~----~~~~~~l~~i~~~~~~~~~via~GGI~~~~dv~kal~lGAd~V~ig~~~l~~l~~~G 317 (367)
. ..+ +..++.+.++++.+ ++|||++|||++++|+.+++++|||+|++||++++ +
T Consensus 197 ~~~~~~~~~~~~~~gg~sg~~~~p~~l~~v~~i~~~~--~ipvi~~GGI~~~~da~~~l~aGAd~V~igr~ll~-----~ 269 (301)
T PRK07259 197 IDIKTRKPILANVTGGLSGPAIKPIALRMVYQVYQAV--DIPIIGMGGISSAEDAIEFIMAGASAVQVGTANFY-----D 269 (301)
T ss_pred cccccCceeecCCcCccCCcCcccccHHHHHHHHHhC--CCCEEEECCCCCHHHHHHHHHcCCCceeEcHHHhc-----C
Confidence 0 011 22567888888877 79999999999999999999999999999999986 4
Q ss_pred hHHHHHHHHHHHHHHHHHHHHhCCCChhhhccc
Q 017718 318 EKGVRRVLEMLREEFELAMALSGCRSLKEITRD 350 (367)
Q Consensus 318 ~~~v~~~i~~l~~el~~~m~~~G~~si~~l~~~ 350 (367)
+ .+++.++++++.+|...|+++++|+.+.
T Consensus 270 P----~~~~~i~~~l~~~~~~~g~~~i~~~~g~ 298 (301)
T PRK07259 270 P----YAFPKIIEGLEAYLDKYGIKSIEEIVGI 298 (301)
T ss_pred c----HHHHHHHHHHHHHHHHcCCCCHHHHhCc
Confidence 4 3788899999999999999999999864
|
|
| >COG0042 tRNA-dihydrouridine synthase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=99.90 E-value=2.3e-22 Score=195.10 Aligned_cols=247 Identities=26% Similarity=0.316 Sum_probs=190.5
Q ss_pred eEcCeeeccceEeCcccchhccCChhhHHHHHHHHHcCC-ceeecCCCCC------CHHHHH--hhC--CCceEEEEeec
Q 017718 64 TVLGFKISMPIMIAPTAMQKMAHPEGEYATARAASAAGT-IMTLSSWSTS------SVEEVA--STG--PGIRFFQLYVY 132 (367)
Q Consensus 64 ~i~g~~l~~Pi~iAPm~~~~l~~~~~e~~~a~aa~~~G~-~~~vs~~~~~------~~e~i~--~~~--~~~~~~QLy~~ 132 (367)
.+....+..++++|||.+.+ |.++++.|+++|. ..++|+|.+. +-+... ... ..|..+||. +
T Consensus 3 ~~~~~~~~~~~~lAPM~gvt------d~~fR~l~~~~ga~~~~~TEmv~~~~~~~~~~~~~~~~~~~~~e~p~~vQl~-g 75 (323)
T COG0042 3 KIGLIELRNRVILAPMAGVT------DLPFRRLARELGAYDLLYTEMVSAKALLHGRKKFLLLLDELEEERPVAVQLG-G 75 (323)
T ss_pred ccccccccCcEEEecCCCCc------cHHHHHHHHHhCCCceEEEccEEEhhhccCCcchhhhcCcCCCCCCEEEEec-C
Confidence 34567788999999998876 8899999999999 8889988432 111111 111 267899998 7
Q ss_pred CCHHHHHHHHHHHHHcCCcEEEEecCCCCCCchhHHhhhhcCCCCccccccccccccCccccccchhhHHHhhhccCccc
Q 017718 133 KDRNVVAQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLTLKNFQGLDLGKMDEANDSGLAAYVAGQIDRSL 212 (367)
Q Consensus 133 ~d~~~~~~~l~ra~~~G~~ai~itvd~p~~g~r~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~ 212 (367)
.|++.+.+.++.+++.|++.|+||++||++ +++.. +.++.++. +|++
T Consensus 76 sdp~~l~eaA~~~~~~g~~~IdlN~GCP~~---------------~V~~~----------------g~Ga~Ll~--~p~l 122 (323)
T COG0042 76 SDPELLAEAAKIAEELGADIIDLNCGCPSP---------------KVVKG----------------GAGAALLK--NPEL 122 (323)
T ss_pred CCHHHHHHHHHHHHhcCCCEEeeeCCCChH---------------HhcCC----------------CcchhhcC--CHHH
Confidence 899999999999999999999999999984 11111 11234444 4444
Q ss_pred --cH-HHHHhhcC-CCEEEEecCC--------HHHHHHHHHcCCcEEEEcCCCCC--CCCCccchHHHHHHHHHHhcCCC
Q 017718 213 --SW-KWLQTITK-LPILVKGVLT--------AEDARIAVQAGAAGIIVSNHGAR--QLDYVPATIMALEEVVKATQGRI 278 (367)
Q Consensus 213 --~~-~~l~~~~~-~Pv~vK~v~~--------~~~a~~~~~~G~d~i~vs~~gg~--~~~~~~~~~~~l~~i~~~~~~~~ 278 (367)
.+ +.+++.++ +||.||.... .+.++.+.++|++.++| ||.+ +.+.++..++.+.++++.++. +
T Consensus 123 v~~iv~a~~~av~~iPVTVKiRlG~d~~~~~~~~ia~~~~~~g~~~ltV--HgRtr~~~y~~~ad~~~I~~vk~~~~~-i 199 (323)
T COG0042 123 LAEIVKAMVEAVGDIPVTVKIRLGWDDDDILALEIARILEDAGADALTV--HGRTRAQGYLGPADWDYIKELKEAVPS-I 199 (323)
T ss_pred HHHHHHHHHHhhCCCCeEEEEecccCcccccHHHHHHHHHhcCCCEEEE--ecccHHhcCCCccCHHHHHHHHHhCCC-C
Confidence 33 38888884 9999999832 24688999999999999 6665 566778899999999999843 9
Q ss_pred cEEEecCCCCHHHHHHHHH-cCCCEEEech-----HHHHHh---hccCh---HHHHHHHHHHHHHHHHHHHHhCCCChhh
Q 017718 279 PVFLDGGVRRGTDVFKALA-LGASGIFIGR-----PVVYSL---AAEGE---KGVRRVLEMLREEFELAMALSGCRSLKE 346 (367)
Q Consensus 279 ~via~GGI~~~~dv~kal~-lGAd~V~ig~-----~~l~~l---~~~G~---~~v~~~i~~l~~el~~~m~~~G~~si~~ 346 (367)
|||++|+|.+.+|+.+.|. .|+|+||+|| |+++.. ...|+ ....+.++.+..+++......|...+..
T Consensus 200 pvi~NGdI~s~~~a~~~l~~tg~DgVMigRga~~nP~l~~~i~~~~~g~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~ 279 (323)
T COG0042 200 PVIANGDIKSLEDAKEMLEYTGADGVMIGRGALGNPWLFRQIDYLETGELLPPTLAEVLDILREHLELLLEYYGKKGLRR 279 (323)
T ss_pred eEEeCCCcCCHHHHHHHHHhhCCCEEEEcHHHccCCcHHHHHHHhhcCCCCCCCHHHHHHHHHHHHHHHHHhccccHHHH
Confidence 9999999999999999999 6899999999 566652 12343 4567788899999999999999777888
Q ss_pred hccccee
Q 017718 347 ITRDHIV 353 (367)
Q Consensus 347 l~~~~l~ 353 (367)
++++...
T Consensus 280 ~r~h~~~ 286 (323)
T COG0042 280 LRKHLGY 286 (323)
T ss_pred HHHHHHH
Confidence 8876543
|
|
| >PRK10415 tRNA-dihydrouridine synthase B; Provisional | Back alignment and domain information |
|---|
Probab=99.90 E-value=4.4e-22 Score=193.37 Aligned_cols=245 Identities=18% Similarity=0.207 Sum_probs=178.5
Q ss_pred eEcCeeeccceEeCcccchhccCChhhHHHHHHHHHcCCceeecCCCCCC-HH---H----HHhh--CCCceEEEEeecC
Q 017718 64 TVLGFKISMPIMIAPTAMQKMAHPEGEYATARAASAAGTIMTLSSWSTSS-VE---E----VAST--GPGIRFFQLYVYK 133 (367)
Q Consensus 64 ~i~g~~l~~Pi~iAPm~~~~l~~~~~e~~~a~aa~~~G~~~~vs~~~~~~-~e---~----i~~~--~~~~~~~QLy~~~ 133 (367)
+|.+..++.|+++|||++.+ |.++++.|.++|..+++++|-+.. +. + .... .+.+..+||+ +.
T Consensus 2 ~i~~~~~~~~~~lAPM~g~t------d~~fR~l~~~~g~~~~~temvs~~~~~~~~~~~~~~~~~~~~~~~~~vQl~-g~ 74 (321)
T PRK10415 2 RIGQYQLRNRLIAAPMAGIT------DRPFRTLCYEMGAGLTVSEMMSSNPQVWESDKSRLRMVHIDEPGIRTVQIA-GS 74 (321)
T ss_pred ccCCccCCCCEEecCCCCCC------cHHHHHHHHHHCCCEEEEccEEcchhhhcCHhHHHHhccCccCCCEEEEEe-CC
Confidence 35667889999999998876 889999999999999988874331 10 0 1111 1256779997 78
Q ss_pred CHHHHHHHHHHHHHcCCcEEEEecCCCCCCchhHHhhhhcCCCCccccccccccccCccccccchhhHHHhhhccCccc-
Q 017718 134 DRNVVAQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLTLKNFQGLDLGKMDEANDSGLAAYVAGQIDRSL- 212 (367)
Q Consensus 134 d~~~~~~~l~ra~~~G~~ai~itvd~p~~g~r~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~- 212 (367)
|++.+.+.++++++.|++.|.+|++||+. ++..++ . ++.+.. ++++
T Consensus 75 ~~~~~~~aa~~~~~~g~d~IdlN~gCP~~---------------~v~~~g------------~----Gs~ll~--~p~~~ 121 (321)
T PRK10415 75 DPKEMADAARINVESGAQIIDINMGCPAK---------------KVNRKL------------A----GSALLQ--YPDLV 121 (321)
T ss_pred CHHHHHHHHHHHHHCCCCEEEEeCCCCHH---------------HHcCCC------------c----ccHHhc--CHHHH
Confidence 99999999999999999999999999973 011010 1 112232 4443
Q ss_pred -cH-HHHHhhcCCCEEEEecC----C----HHHHHHHHHcCCcEEEEcCCCCC--CCCCccchHHHHHHHHHHhcCCCcE
Q 017718 213 -SW-KWLQTITKLPILVKGVL----T----AEDARIAVQAGAAGIIVSNHGAR--QLDYVPATIMALEEVVKATQGRIPV 280 (367)
Q Consensus 213 -~~-~~l~~~~~~Pv~vK~v~----~----~~~a~~~~~~G~d~i~vs~~gg~--~~~~~~~~~~~l~~i~~~~~~~~~v 280 (367)
.+ +.+++.+++||.+|... + .+.++.+.++|+|+|+++ |++ +...++..++.+.++++.+ ++||
T Consensus 122 ~eiv~av~~a~d~pv~vKiR~G~~~~~~~~~~~a~~le~~G~d~i~vh--~rt~~~~~~G~a~~~~i~~ik~~~--~iPV 197 (321)
T PRK10415 122 KSILTEVVNAVDVPVTLKIRTGWAPEHRNCVEIAQLAEDCGIQALTIH--GRTRACLFNGEAEYDSIRAVKQKV--SIPV 197 (321)
T ss_pred HHHHHHHHHhcCCceEEEEEccccCCcchHHHHHHHHHHhCCCEEEEe--cCccccccCCCcChHHHHHHHHhc--CCcE
Confidence 22 37788889999999962 1 245778999999999994 443 4556777899999999887 7999
Q ss_pred EEecCCCCHHHHHHHHH-cCCCEEEechH-----HHHHhhc----cC----hHHHHHHHHHHHHHHHHHHHHhCCC-Chh
Q 017718 281 FLDGGVRRGTDVFKALA-LGASGIFIGRP-----VVYSLAA----EG----EKGVRRVLEMLREEFELAMALSGCR-SLK 345 (367)
Q Consensus 281 ia~GGI~~~~dv~kal~-lGAd~V~ig~~-----~l~~l~~----~G----~~~v~~~i~~l~~el~~~m~~~G~~-si~ 345 (367)
|++|||.+++|+.+++. .|||+||+||+ |+|.... .| +....+.++.+.++++......|.. .+.
T Consensus 198 I~nGgI~s~~da~~~l~~~gadgVmiGR~~l~nP~if~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 277 (321)
T PRK10415 198 IANGDITDPLKARAVLDYTGADALMIGRAAQGRPWIFREIQHYLDTGELLPPLPLAEVKRLLCAHVRELHDFYGPAKGYR 277 (321)
T ss_pred EEeCCCCCHHHHHHHHhccCCCEEEEChHhhcCChHHHHHHHHHhCCCCCCCCCHHHHHHHHHHHHHHHHHHHChHHHHH
Confidence 99999999999999998 69999999994 4553221 13 1234567778888888888877753 466
Q ss_pred hhcccce
Q 017718 346 EITRDHI 352 (367)
Q Consensus 346 ~l~~~~l 352 (367)
+++++.-
T Consensus 278 ~~rk~~~ 284 (321)
T PRK10415 278 IARKHVS 284 (321)
T ss_pred HHHHHHH
Confidence 6666543
|
|
| >PF00478 IMPDH: IMP dehydrogenase / GMP reductase domain; InterPro: IPR001093 Synonym(s): Inosine-5'-monophosphate dehydrogenase, Inosinic acid dehydrogenase; Synonym(s): Guanosine 5'-monophosphate oxidoreductase This entry contains two related enzymes IMP dehydrogenase and GMP reducatase | Back alignment and domain information |
|---|
Probab=99.90 E-value=8.4e-22 Score=191.21 Aligned_cols=256 Identities=24% Similarity=0.333 Sum_probs=174.7
Q ss_pred ccccceeecccc---CCCCCCccceeE-cCeeeccceEeCcccchhccCChhhHHHHHHHHHcCCceeecCCCCCCHHHH
Q 017718 42 AFSRILFRPRIL---IDVSKIDMNTTV-LGFKISMPIMIAPTAMQKMAHPEGEYATARAASAAGTIMTLSSWSTSSVEEV 117 (367)
Q Consensus 42 ~~~~i~l~pr~l---~~~~~vd~st~i-~g~~l~~Pi~iAPm~~~~l~~~~~e~~~a~aa~~~G~~~~vs~~~~~~~e~i 117 (367)
.||++.|+|... +...++|+++.+ -+.+++.||+-|||...+ |..+|.+.+++|...++.-. .++|+.
T Consensus 4 tfdDVllvP~~s~v~~s~~dv~~~~~~~~~~~l~iPivsa~MDtVt------e~~mAiama~~Gglgvih~~--~~~e~q 75 (352)
T PF00478_consen 4 TFDDVLLVPGRSTVLPSRSDVSLSTKLTRNITLKIPIVSAPMDTVT------ESEMAIAMARLGGLGVIHRN--MSIEEQ 75 (352)
T ss_dssp -GGGEEEE--SBSSTGGGGG-BEEEESSTSEEESSSEEE-SSTTTS------SHHHHHHHHHTTSEEEEESS--SCHHHH
T ss_pred ccccEEEecCCCCCCCCHhheECcccccCCEeecCceEecCccccc------hHHHHHHHHHhcCCceecCC--CCHHHH
Confidence 599999999774 455566666556 689999999999996543 78999999999988888543 454432
Q ss_pred H-------hhCC-------CceEEEEeecCCHHHHHHHHHHHHHcCCcEEEEecCCCCCCchhHHhhhhcCCCCcccccc
Q 017718 118 A-------STGP-------GIRFFQLYVYKDRNVVAQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLTLKN 183 (367)
Q Consensus 118 ~-------~~~~-------~~~~~QLy~~~d~~~~~~~l~ra~~~G~~ai~itvd~p~~g~r~~~~~~~~~~p~~~~~~~ 183 (367)
. ...| ....+-...+..++ ..+.++...++|++.|+| |+.. ++
T Consensus 76 ~~~v~~vK~~~~~a~~d~~~~l~V~aavg~~~~-~~er~~~L~~agvD~ivI--D~a~----------g~---------- 132 (352)
T PF00478_consen 76 AEEVKKVKRYYPNASKDEKGRLLVAAAVGTRDD-DFERAEALVEAGVDVIVI--DSAH----------GH---------- 132 (352)
T ss_dssp HHHHHHHHTHHTTHHBHTTSCBCEEEEEESSTC-HHHHHHHHHHTT-SEEEE--E-SS----------TT----------
T ss_pred HHHHhhhccccccccccccccceEEEEecCCHH-HHHHHHHHHHcCCCEEEc--cccC----------cc----------
Confidence 2 1111 12222222222221 134455566789999887 3321 11
Q ss_pred ccccccCccccccchhhHHHhhhccCccccHHHHHhhcC-CCEEEEecCCHHHHHHHHHcCCcEEEEcCCCCCC------
Q 017718 184 FQGLDLGKMDEANDSGLAAYVAGQIDRSLSWKWLQTITK-LPILVKGVLTAEDARIAVQAGAAGIIVSNHGARQ------ 256 (367)
Q Consensus 184 ~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~l~~~~~-~Pv~vK~v~~~~~a~~~~~~G~d~i~vs~~gg~~------ 256 (367)
.+++.. ..+++|+.++ +||++..+.+.+.++.++++|||+|.|.-.+|.-
T Consensus 133 -----------------s~~~~~------~ik~ik~~~~~~~viaGNV~T~e~a~~L~~aGad~vkVGiGpGsiCtTr~v 189 (352)
T PF00478_consen 133 -----------------SEHVID------MIKKIKKKFPDVPVIAGNVVTYEGAKDLIDAGADAVKVGIGPGSICTTREV 189 (352)
T ss_dssp -----------------SHHHHH------HHHHHHHHSTTSEEEEEEE-SHHHHHHHHHTT-SEEEESSSSSTTBHHHHH
T ss_pred -----------------HHHHHH------HHHHHHHhCCCceEEecccCCHHHHHHHHHcCCCEEEEeccCCcccccccc
Confidence 001110 2448888885 9999999999999999999999999996444431
Q ss_pred CCCccchHHHHHHHHHHhcC-CCcEEEecCCCCHHHHHHHHHcCCCEEEechHHH-------------------------
Q 017718 257 LDYVPATIMALEEVVKATQG-RIPVFLDGGVRRGTDVFKALALGASGIFIGRPVV------------------------- 310 (367)
Q Consensus 257 ~~~~~~~~~~l~~i~~~~~~-~~~via~GGI~~~~dv~kal~lGAd~V~ig~~~l------------------------- 310 (367)
...|.|.+.++.+++++..+ .+|||+||||+++.|++|||++|||+||+|+.|-
T Consensus 190 ~GvG~PQ~tAv~~~a~~a~~~~v~iIADGGi~~sGDi~KAla~GAd~VMlG~llAgt~EsPG~~~~~~g~~~K~yrGMgS 269 (352)
T PF00478_consen 190 TGVGVPQLTAVYECAEAARDYGVPIIADGGIRTSGDIVKALAAGADAVMLGSLLAGTDESPGEVIYIDGKRYKKYRGMGS 269 (352)
T ss_dssp HSBSCTHHHHHHHHHHHHHCTTSEEEEESS-SSHHHHHHHHHTT-SEEEESTTTTTBTTSSSEEEEETTEEEEEEEETTS
T ss_pred cccCCcHHHHHHHHHHHhhhccCceeecCCcCcccceeeeeeecccceeechhhccCcCCCCceEEECCeEEEEeccccc
Confidence 23467899999999887653 7999999999999999999999999999999771
Q ss_pred -HHhhc------------------cCh-------HHHHHHHHHHHHHHHHHHHHhCCCChhhhcccc
Q 017718 311 -YSLAA------------------EGE-------KGVRRVLEMLREEFELAMALSGCRSLKEITRDH 351 (367)
Q Consensus 311 -~~l~~------------------~G~-------~~v~~~i~~l~~el~~~m~~~G~~si~~l~~~~ 351 (367)
.++.. +|. ..+.+++..|...|+..|.++|..+|.||+...
T Consensus 270 ~~A~~~~~~~~~ry~~~~~~~~v~eGve~~vp~~G~v~~~l~~l~gglrs~m~y~Ga~~i~el~~~~ 336 (352)
T PF00478_consen 270 LGAMKKRRGSGDRYFQAEDKKFVPEGVEGLVPYKGSVSDILPQLVGGLRSGMGYVGARSIKELRKKA 336 (352)
T ss_dssp HHHHHHHSTTGCTCTSSTSSTSSSSBEEEEEE-BB-HHHHHHHHHHHHHHHHHHTTSSBHHHHHHHH
T ss_pred HHHHhhccccchhccccccccccccceeecCCCCCCHHHHHHHHHHHHHHHHHhcCcccHHHHHhCC
Confidence 11100 111 138899999999999999999999999999764
|
These enzymes adopt a TIM barrel structure. IMP dehydrogenase (1.1.1.205 from EC) (IMPDH) catalyzes the rate-limiting reaction of de novo GTP biosynthesis, the NAD-dependent reduction of IMP into XMP []. |
| >PRK06843 inosine 5-monophosphate dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=99.89 E-value=1.7e-21 Score=192.47 Aligned_cols=270 Identities=21% Similarity=0.290 Sum_probs=187.0
Q ss_pred ccccceeecccc-CCCCCCccceeEc-CeeeccceEeCcccchhccCChhhHHHHHHHHHcCCceeecCCCCCCHHHHHh
Q 017718 42 AFSRILFRPRIL-IDVSKIDMNTTVL-GFKISMPIMIAPTAMQKMAHPEGEYATARAASAAGTIMTLSSWSTSSVEEVAS 119 (367)
Q Consensus 42 ~~~~i~l~pr~l-~~~~~vd~st~i~-g~~l~~Pi~iAPm~~~~l~~~~~e~~~a~aa~~~G~~~~vs~~~~~~~e~i~~ 119 (367)
.||++.|+|... ...+++|++|.+. .+.+..||+-|||...+ +..++.+.+++|...+++. ..++|++.+
T Consensus 11 tfdDvll~P~~s~~~~~~vdl~t~lt~~l~l~iPIvsApMd~Vt------~~~lA~AvA~aGGlGvI~~--~~~~e~l~~ 82 (404)
T PRK06843 11 TFDDVSLIPRKSSVLPSEVSLKTQLTKNISLNIPFLSSAMDTVT------ESQMAIAIAKEGGIGIIHK--NMSIEAQRK 82 (404)
T ss_pred CccceEEccCCCccCHHhccccchhhhccCCCCCEecCCCCCCC------CHHHHHHHHHCCCEEEecC--CCCHHHHHH
Confidence 699999999754 3557899998885 57789999999997654 6789999999998888863 355665432
Q ss_pred hC------C--Cce------------------EE------------------------EEe----ecCCHHHHHHHHHHH
Q 017718 120 TG------P--GIR------------------FF------------------------QLY----VYKDRNVVAQLVRRA 145 (367)
Q Consensus 120 ~~------~--~~~------------------~~------------------------QLy----~~~d~~~~~~~l~ra 145 (367)
.. . .+. .+ ||+ .+..++ ..+.++.+
T Consensus 83 eI~~vk~~~~~~~i~~~~d~~~~~~~~~t~~~~~~~~~~~~d~~~~~~~~~a~~d~~~~l~v~aavg~~~~-~~~~v~~l 161 (404)
T PRK06843 83 EIEKVKTYKFQKTINTNGDTNEQKPEIFTAKQHLEKSDAYKNAEHKEDFPNACKDLNNKLRVGAAVSIDID-TIERVEEL 161 (404)
T ss_pred HHHHHHhhcCCCceeecccccccchhheeccccchHHHHHhhhhhhhhcchhhhhhhcCeEEEEEEeCCHH-HHHHHHHH
Confidence 10 0 000 00 111 111222 44566666
Q ss_pred HHcCCcEEEEecCCCCCCchhHHhhhhcCCCCccccccccccccCccccccchhhHHHhhhccCcccc-HHHHHhhc-CC
Q 017718 146 ERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLTLKNFQGLDLGKMDEANDSGLAAYVAGQIDRSLS-WKWLQTIT-KL 223 (367)
Q Consensus 146 ~~~G~~ai~itvd~p~~g~r~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~-~~~l~~~~-~~ 223 (367)
.++|++.|+| |+... . + ....+ ++++|+.+ ++
T Consensus 162 v~aGvDvI~i--D~a~g----------~--~--------------------------------~~~~~~v~~ik~~~p~~ 195 (404)
T PRK06843 162 VKAHVDILVI--DSAHG----------H--S--------------------------------TRIIELVKKIKTKYPNL 195 (404)
T ss_pred HhcCCCEEEE--ECCCC----------C--C--------------------------------hhHHHHHHHHHhhCCCC
Confidence 6788887766 43210 0 0 00012 34888887 68
Q ss_pred CEEEEecCCHHHHHHHHHcCCcEEEEcCCCC-----CCCC-CccchHHHHHHHHHHhc-CCCcEEEecCCCCHHHHHHHH
Q 017718 224 PILVKGVLTAEDARIAVQAGAAGIIVSNHGA-----RQLD-YVPATIMALEEVVKATQ-GRIPVFLDGGVRRGTDVFKAL 296 (367)
Q Consensus 224 Pv~vK~v~~~~~a~~~~~~G~d~i~vs~~gg-----~~~~-~~~~~~~~l~~i~~~~~-~~~~via~GGI~~~~dv~kal 296 (367)
+|+++.+.+.++|+.+.++|+|+|.++...| +..+ .+.+.+..+.++.+.+. ..+|||++|||+++.|++|||
T Consensus 196 ~vi~g~V~T~e~a~~l~~aGaD~I~vG~g~Gs~c~tr~~~g~g~p~ltai~~v~~~~~~~~vpVIAdGGI~~~~Di~KAL 275 (404)
T PRK06843 196 DLIAGNIVTKEAALDLISVGADCLKVGIGPGSICTTRIVAGVGVPQITAICDVYEVCKNTNICIIADGGIRFSGDVVKAI 275 (404)
T ss_pred cEEEEecCCHHHHHHHHHcCCCEEEECCCCCcCCcceeecCCCCChHHHHHHHHHHHhhcCCeEEEeCCCCCHHHHHHHH
Confidence 9999999999999999999999999864333 3333 35677888777766543 279999999999999999999
Q ss_pred HcCCCEEEechHHHH--------------------Hhhc-------------------------cChH-------HHHHH
Q 017718 297 ALGASGIFIGRPVVY--------------------SLAA-------------------------EGEK-------GVRRV 324 (367)
Q Consensus 297 ~lGAd~V~ig~~~l~--------------------~l~~-------------------------~G~~-------~v~~~ 324 (367)
++||++||+|++|.- +++. +|.+ .+.++
T Consensus 276 alGA~aVmvGs~~agt~Espg~~~~~~g~~~K~yrGmgS~~Am~~~~~~ry~~~~~~~~~~~v~eGveg~v~~~G~v~~~ 355 (404)
T PRK06843 276 AAGADSVMIGNLFAGTKESPSEEIIYNGKKFKSYVGMGSISAMKRGSKSRYFQLENNEPKKLVPEGIEGMVPYSGKLKDI 355 (404)
T ss_pred HcCCCEEEEcceeeeeecCCCcEEEECCEEEEEEeccchHHHHhccccccccccccccccccCCCccEEEecCCCCHHHH
Confidence 999999999998831 1110 0111 18889
Q ss_pred HHHHHHHHHHHHHHhCCCChhhhccc-ceeeccCCCCCCCCCC
Q 017718 325 LEMLREEFELAMALSGCRSLKEITRD-HIVTEWDASLPRPVPR 366 (367)
Q Consensus 325 i~~l~~el~~~m~~~G~~si~~l~~~-~l~~~~~~~~~~~~~~ 366 (367)
+..|...|+..|.++|+.+|.||+.. ........+....-||
T Consensus 356 ~~~l~gglrs~m~y~Ga~~i~el~~~a~fv~~t~~~~~E~~~h 398 (404)
T PRK06843 356 LTQLKGGLMSGMGYLGAATISDLKINSKFVKISHSSLKESHPH 398 (404)
T ss_pred HHHHHHHHHHHhhccCCCcHHHHHhcCeEEEEchhhhhccCCC
Confidence 99999999999999999999999843 3333334444444444
|
|
| >PRK07565 dihydroorotate dehydrogenase 2; Reviewed | Back alignment and domain information |
|---|
Probab=99.89 E-value=2.5e-21 Score=189.28 Aligned_cols=237 Identities=19% Similarity=0.200 Sum_probs=167.4
Q ss_pred ccceeEcCeeeccceEeCcccchhccCChhhHHHHHHHHHcCCceeec-CCC----------------------------
Q 017718 60 DMNTTVLGFKISMPIMIAPTAMQKMAHPEGEYATARAASAAGTIMTLS-SWS---------------------------- 110 (367)
Q Consensus 60 d~st~i~g~~l~~Pi~iAPm~~~~l~~~~~e~~~a~aa~~~G~~~~vs-~~~---------------------------- 110 (367)
|++|+++|.+|++||++|.-+... +....+.+.+.|...++. |..
T Consensus 2 ~l~~~~~Gl~l~nPv~~asg~~~~------~~~~~~~~~~~g~Gavv~kti~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 75 (334)
T PRK07565 2 DLSTTYLGLTLRNPLVASASPLSE------SVDNVKRLEDAGAGAVVLKSLFEEQIRHEAAELDRHLTHGTESFAEALDY 75 (334)
T ss_pred CceEEECCEecCCCCEecCcCCCC------CHHHHHHHHHCCCeEEEEeeCCHHHhhccccccccccccCCCcchhhhhh
Confidence 689999999999999988854432 233344477777776552 211
Q ss_pred -------CCCHHHHH-------hhCCCceEEEEeecCCHHHHHHHHHHHHHcCCcEEEEecCCCCCCchhHHhhhhcCCC
Q 017718 111 -------TSSVEEVA-------STGPGIRFFQLYVYKDRNVVAQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFTLP 176 (367)
Q Consensus 111 -------~~~~e~i~-------~~~~~~~~~QLy~~~d~~~~~~~l~ra~~~G~~ai~itvd~p~~g~r~~~~~~~~~~p 176 (367)
+..+++.. +....|.+.|+. ..+.+...+++++++++|++++.+|+.||....
T Consensus 76 ~n~~gl~n~g~d~~~~~i~~~~~~~~~pvi~sI~-g~~~~e~~~~a~~~~~agad~ielN~scpp~~~------------ 142 (334)
T PRK07565 76 FPEPAKFYVGPEEYLELIRRAKEAVDIPVIASLN-GSSAGGWVDYARQIEQAGADALELNIYYLPTDP------------ 142 (334)
T ss_pred hhhhhccCcCHHHHHHHHHHHHHhcCCcEEEEec-cCCHHHHHHHHHHHHHcCCCEEEEeCCCCCCCC------------
Confidence 01122111 111257888986 456667778899999999999999999864200
Q ss_pred CccccccccccccCccccccchhhHHHhhhccCccccH---HHHHhhcCCCEEEEecCC----HHHHHHHHHcCCcEEEE
Q 017718 177 PFLTLKNFQGLDLGKMDEANDSGLAAYVAGQIDRSLSW---KWLQTITKLPILVKGVLT----AEDARIAVQAGAAGIIV 249 (367)
Q Consensus 177 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~---~~l~~~~~~Pv~vK~v~~----~~~a~~~~~~G~d~i~v 249 (367)
. .. +.. .+...| +++++.+++||++|.... .+.++.+.++|+|+|++
T Consensus 143 -~--~~--------------g~~---------~~~~~~eil~~v~~~~~iPV~vKl~p~~~~~~~~a~~l~~~G~dgI~~ 196 (334)
T PRK07565 143 -D--IS--------------GAE---------VEQRYLDILRAVKSAVSIPVAVKLSPYFSNLANMAKRLDAAGADGLVL 196 (334)
T ss_pred -C--Cc--------------ccc---------HHHHHHHHHHHHHhccCCcEEEEeCCCchhHHHHHHHHHHcCCCeEEE
Confidence 0 00 000 001112 378888899999998754 35578899999999999
Q ss_pred cCCCCC-CC---------CCc---c----chHHHHHHHHHHhcCCCcEEEecCCCCHHHHHHHHHcCCCEEEechHHHHH
Q 017718 250 SNHGAR-QL---------DYV---P----ATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFIGRPVVYS 312 (367)
Q Consensus 250 s~~gg~-~~---------~~~---~----~~~~~l~~i~~~~~~~~~via~GGI~~~~dv~kal~lGAd~V~ig~~~l~~ 312 (367)
+|+... .. .++ + ..++.+.++++.+ ++|||++|||+|++|+.|+|.+|||+||+||++++
T Consensus 197 ~n~~~~~~~d~~~~~~~~~~glsg~~~~~~al~~v~~~~~~~--~ipIig~GGI~s~~Da~e~l~aGA~~V~v~t~~~~- 273 (334)
T PRK07565 197 FNRFYQPDIDLETLEVVPGLVLSTPAELRLPLRWIAILSGRV--GADLAATTGVHDAEDVIKMLLAGADVVMIASALLR- 273 (334)
T ss_pred ECCcCCCCcChhhcccccCCCCCCchhhhHHHHHHHHHHhhc--CCCEEEECCCCCHHHHHHHHHcCCCceeeehHHhh-
Confidence 886321 11 111 1 1345566666655 79999999999999999999999999999999987
Q ss_pred hhccChHHHHHHHHHHHHHHHHHHHHhCCCChhhhcccc
Q 017718 313 LAAEGEKGVRRVLEMLREEFELAMALSGCRSLKEITRDH 351 (367)
Q Consensus 313 l~~~G~~~v~~~i~~l~~el~~~m~~~G~~si~~l~~~~ 351 (367)
+|+ .+++.+.+||+.+|...|+++++|+++..
T Consensus 274 ---~g~----~~~~~i~~~L~~~l~~~g~~~i~e~~g~~ 305 (334)
T PRK07565 274 ---HGP----DYIGTILRGLEDWMERHGYESLQQFRGSM 305 (334)
T ss_pred ---hCc----HHHHHHHHHHHHHHHHcCCCCHHHHhccc
Confidence 355 37889999999999999999999999854
|
|
| >cd04740 DHOD_1B_like Dihydroorotate dehydrogenase (DHOD) class 1B FMN-binding domain | Back alignment and domain information |
|---|
Probab=99.89 E-value=6.9e-21 Score=183.10 Aligned_cols=234 Identities=21% Similarity=0.256 Sum_probs=168.1
Q ss_pred ceeEcCeeeccceEeCcccchhccCChhhHHHHHHHHHcCCceeec-CCCCC--------------------------CH
Q 017718 62 NTTVLGFKISMPIMIAPTAMQKMAHPEGEYATARAASAAGTIMTLS-SWSTS--------------------------SV 114 (367)
Q Consensus 62 st~i~g~~l~~Pi~iAPm~~~~l~~~~~e~~~a~aa~~~G~~~~vs-~~~~~--------------------------~~ 114 (367)
+|+++|.++++||++|+ |..+ ....+++.+...|..+++. |.+.. ..
T Consensus 1 ~~~~~G~~~~nP~~~aa-g~~~-----~~~~~~~~~~~g~~g~v~~~ti~~~~~~~~~~p~~~~~~~~~~n~~g~~~~g~ 74 (296)
T cd04740 1 SVELAGLRLKNPVILAS-GTFG-----FGEELSRVADLGKLGAIVTKSITLEPREGNPPPRVVETPGGMLNAIGLQNPGV 74 (296)
T ss_pred CeEECCEEcCCCCEECC-CCCC-----CHHHHHHHHhcCCceEEEECCcCCCCCCCCCCCeEEecCcceeeecCCCCcCH
Confidence 57899999999999995 2111 1335566555554777653 32111 11
Q ss_pred HH----HHhh---CCCceEEEEeecCCHHHHHHHHHHHHHcCCcEEEEecCCCCCCchhHHhhhhcCCCCcccccccccc
Q 017718 115 EE----VAST---GPGIRFFQLYVYKDRNVVAQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLTLKNFQGL 187 (367)
Q Consensus 115 e~----i~~~---~~~~~~~QLy~~~d~~~~~~~l~ra~~~G~~ai~itvd~p~~g~r~~~~~~~~~~p~~~~~~~~~~~ 187 (367)
++ +.+. ...|..+||. ..+.+...+.+++++++|++++.+|+.||....|- -
T Consensus 75 ~~~~~~~~~~~~~~~~p~ivsi~-g~~~~~~~~~a~~~~~~G~d~iElN~~cP~~~~~g------~-------------- 133 (296)
T cd04740 75 EAFLEELLPWLREFGTPVIASIA-GSTVEEFVEVAEKLADAGADAIELNISCPNVKGGG------M-------------- 133 (296)
T ss_pred HHHHHHHHHHhhcCCCcEEEEEe-cCCHHHHHHHHHHHHHcCCCEEEEECCCCCCCCCc------c--------------
Confidence 22 2221 1257889997 56788888999999999999999999999741110 0
Q ss_pred ccCccccccchhhHHHhhhccCcccc---HHHHHhhcCCCEEEEecCCH----HHHHHHHHcCCcEEEEcCC-CCCCC--
Q 017718 188 DLGKMDEANDSGLAAYVAGQIDRSLS---WKWLQTITKLPILVKGVLTA----EDARIAVQAGAAGIIVSNH-GARQL-- 257 (367)
Q Consensus 188 ~~~~~~~~~~~~~~~~~~~~~d~~~~---~~~l~~~~~~Pv~vK~v~~~----~~a~~~~~~G~d~i~vs~~-gg~~~-- 257 (367)
.+. .++.+. .+++|+.+++||++|...+. +.++.+.++|+|+|+++|+ .|+..
T Consensus 134 ---------------~~~--~~~~~~~eiv~~vr~~~~~Pv~vKl~~~~~~~~~~a~~~~~~G~d~i~~~nt~~g~~~~~ 196 (296)
T cd04740 134 ---------------AFG--TDPEAVAEIVKAVKKATDVPVIVKLTPNVTDIVEIARAAEEAGADGLTLINTLKGMAIDI 196 (296)
T ss_pred ---------------ccc--CCHHHHHHHHHHHHhccCCCEEEEeCCCchhHHHHHHHHHHcCCCEEEEECCCccccccc
Confidence 000 022222 23788888999999987543 4478899999999999874 22111
Q ss_pred -------------CCcc----chHHHHHHHHHHhcCCCcEEEecCCCCHHHHHHHHHcCCCEEEechHHHHHhhccChHH
Q 017718 258 -------------DYVP----ATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFIGRPVVYSLAAEGEKG 320 (367)
Q Consensus 258 -------------~~~~----~~~~~l~~i~~~~~~~~~via~GGI~~~~dv~kal~lGAd~V~ig~~~l~~l~~~G~~~ 320 (367)
..++ ..++.+.++++.+ ++|||++|||.+++|+.++|++|||+|++||++++ ++
T Consensus 197 ~~~~~~~~~~~gg~sg~~~~~~~~~~i~~i~~~~--~ipii~~GGI~~~~da~~~l~~GAd~V~igra~l~-----~p-- 267 (296)
T cd04740 197 ETRKPILGNVTGGLSGPAIKPIALRMVYQVYKAV--EIPIIGVGGIASGEDALEFLMAGASAVQVGTANFV-----DP-- 267 (296)
T ss_pred ccCceeecCCcceecCcccchHHHHHHHHHHHhc--CCCEEEECCCCCHHHHHHHHHcCCCEEEEchhhhc-----Ch--
Confidence 1122 2457788888776 79999999999999999999999999999999986 34
Q ss_pred HHHHHHHHHHHHHHHHHHhCCCChhhhccc
Q 017718 321 VRRVLEMLREEFELAMALSGCRSLKEITRD 350 (367)
Q Consensus 321 v~~~i~~l~~el~~~m~~~G~~si~~l~~~ 350 (367)
.+++.++++|.++|+..|+++++|+++.
T Consensus 268 --~~~~~i~~~l~~~~~~~g~~~~~~~~g~ 295 (296)
T cd04740 268 --EAFKEIIEGLEAYLDEEGIKSIEELVGL 295 (296)
T ss_pred --HHHHHHHHHHHHHHHHcCCCCHHHHhCc
Confidence 3778999999999999999999999863
|
DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences and cellular location. Members of class 1 are cytosolic enzymes and multimers while class 2 enzymes are membrane associated and monomeric. The class 1 enzymes can be further divided into subtypes 1A and 1B which are homodimers and heterotetrameric proteins, respectively. |
| >PRK10550 tRNA-dihydrouridine synthase C; Provisional | Back alignment and domain information |
|---|
Probab=99.88 E-value=9e-21 Score=183.27 Aligned_cols=220 Identities=19% Similarity=0.205 Sum_probs=157.9
Q ss_pred cceEeCcccchhccCChhhHHHHHHHHHcC-CceeecCCCCC--------CHHHHHh------hC--CCceEEEEeecCC
Q 017718 72 MPIMIAPTAMQKMAHPEGEYATARAASAAG-TIMTLSSWSTS--------SVEEVAS------TG--PGIRFFQLYVYKD 134 (367)
Q Consensus 72 ~Pi~iAPm~~~~l~~~~~e~~~a~aa~~~G-~~~~vs~~~~~--------~~e~i~~------~~--~~~~~~QLy~~~d 134 (367)
+|+++|||++.+ |.++++.|.+.| ..+++++|-+. ....+.+ .. ..|..+||+ +.|
T Consensus 1 ~~~~lAPMag~t------d~~fR~l~~~~g~~~~~~temvs~~~~~~~~~~~~~~~~~~~~~~~~~~e~p~~vQl~-g~~ 73 (312)
T PRK10550 1 MRVLLAPMEGVL------DSLVRELLTEVNDYDLCITEFLRVVDQLLPVKVFHRLCPELHNASRTPSGTLVRIQLL-GQY 73 (312)
T ss_pred CCeEEECCCCCc------CHHHHHHHHHhCCCCEEEeCCEEechhcccchhHHHHhHHhcccCCCCCCCcEEEEec-cCC
Confidence 589999999886 889999999999 78889988331 1111111 11 268999998 789
Q ss_pred HHHHHHHHHHHHHcCCcEEEEecCCCCCCchhHHhhhhcCCCCccccccccccccCccccccchhhHHHhhhccCccc--
Q 017718 135 RNVVAQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLTLKNFQGLDLGKMDEANDSGLAAYVAGQIDRSL-- 212 (367)
Q Consensus 135 ~~~~~~~l~ra~~~G~~ai~itvd~p~~g~r~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~-- 212 (367)
++.+.+.++++++.|++.|.||++||++ +++.. +. ++.++. ++.+
T Consensus 74 p~~~~~aA~~~~~~g~d~IdiN~GCP~~---------------~v~~~------------g~----Gs~Ll~--~~~~~~ 120 (312)
T PRK10550 74 PQWLAENAARAVELGSWGVDLNCGCPSK---------------TVNGS------------GG----GATLLK--DPELIY 120 (312)
T ss_pred HHHHHHHHHHHHHcCCCEEEEeCCCCch---------------HHhcC------------CC----chHhhc--CHHHHH
Confidence 9999999999999999999999999973 11100 01 112232 3443
Q ss_pred cH-HHHHhhc--CCCEEEEecCC-------HHHHHHHHHcCCcEEEEcCCCCCCCCCccc-hHHHHHHHHHHhcCCCcEE
Q 017718 213 SW-KWLQTIT--KLPILVKGVLT-------AEDARIAVQAGAAGIIVSNHGARQLDYVPA-TIMALEEVVKATQGRIPVF 281 (367)
Q Consensus 213 ~~-~~l~~~~--~~Pv~vK~v~~-------~~~a~~~~~~G~d~i~vs~~gg~~~~~~~~-~~~~l~~i~~~~~~~~~vi 281 (367)
.+ +.+++.+ ++||.+|.... .+.++.+.++|+|.|+|++....+.+.+++ .++.+.++++.+ ++|||
T Consensus 121 eiv~avr~~~~~~~pVsvKiR~g~~~~~~~~~~a~~l~~~Gvd~i~Vh~Rt~~~~y~g~~~~~~~i~~ik~~~--~iPVi 198 (312)
T PRK10550 121 QGAKAMREAVPAHLPVTVKVRLGWDSGERKFEIADAVQQAGATELVVHGRTKEDGYRAEHINWQAIGEIRQRL--TIPVI 198 (312)
T ss_pred HHHHHHHHhcCCCcceEEEEECCCCCchHHHHHHHHHHhcCCCEEEECCCCCccCCCCCcccHHHHHHHHhhc--CCcEE
Confidence 22 3777777 49999998632 244788999999999994322224445654 789999999887 79999
Q ss_pred EecCCCCHHHHHHHHH-cCCCEEEech-----HHHHHhhccCh--HHHHHHHHHHHHHHH
Q 017718 282 LDGGVRRGTDVFKALA-LGASGIFIGR-----PVVYSLAAEGE--KGVRRVLEMLREEFE 333 (367)
Q Consensus 282 a~GGI~~~~dv~kal~-lGAd~V~ig~-----~~l~~l~~~G~--~~v~~~i~~l~~el~ 333 (367)
++|||.|++|+.+++. .|||+||||| ||+|.....|. ....+.++.+.++++
T Consensus 199 ~nGdI~t~~da~~~l~~~g~DgVmiGRg~l~nP~lf~~~~~g~~~~~~~e~~~~~~~~~~ 258 (312)
T PRK10550 199 ANGEIWDWQSAQQCMAITGCDAVMIGRGALNIPNLSRVVKYNEPRMPWPEVVALLQKYTR 258 (312)
T ss_pred EeCCcCCHHHHHHHHhccCCCEEEEcHHhHhCcHHHHHhhcCCCCCCHHHHHHHHHHHHH
Confidence 9999999999999997 6899999999 55665433332 223455555665554
|
|
| >PLN02495 oxidoreductase, acting on the CH-CH group of donors | Back alignment and domain information |
|---|
Probab=99.88 E-value=1.2e-20 Score=186.12 Aligned_cols=248 Identities=20% Similarity=0.277 Sum_probs=174.2
Q ss_pred CCCccceeEcCeeeccceEeCcccchhccCChhhHHHHHHHHHcCCceeec-CC---C----------------------
Q 017718 57 SKIDMNTTVLGFKISMPIMIAPTAMQKMAHPEGEYATARAASAAGTIMTLS-SW---S---------------------- 110 (367)
Q Consensus 57 ~~vd~st~i~g~~l~~Pi~iAPm~~~~l~~~~~e~~~a~aa~~~G~~~~vs-~~---~---------------------- 110 (367)
+..|++|+|+|+++++||++|.-... .+....+.+.+.|...++. |. .
T Consensus 7 ~~~dLst~~~Gl~l~NP~i~ASgp~t------~~~e~~~~~~~~g~GAVV~KTi~~~~~~~~n~~pr~~~~~~g~~~~~~ 80 (385)
T PLN02495 7 SEPDLSVTVNGLKMPNPFVIGSGPPG------TNYTVMKRAFDEGWGGVIAKTVSLDASKVINVTPRYARLRAGANGSAK 80 (385)
T ss_pred CCCcceEEECCEEcCCCcEeCCccCC------CCHHHHHHHHhcCCeEEEeccccCCccccCCCCCeEEecCcccccccc
Confidence 46789999999999999999984332 2445555656668776652 11 0
Q ss_pred -C------C------CHH----HHH---hhCC-CceEEEEeecCCHHHHHHHHHHHHHcCCcEEEEecCCCCCCchhHHh
Q 017718 111 -T------S------SVE----EVA---STGP-GIRFFQLYVYKDRNVVAQLVRRAERAGFKAIALTVDTPRLGRREADI 169 (367)
Q Consensus 111 -~------~------~~e----~i~---~~~~-~~~~~QLy~~~d~~~~~~~l~ra~~~G~~ai~itvd~p~~g~r~~~~ 169 (367)
. . .++ ++. +..+ .|.+..+....+.+...+++++++++|++++.+|+.||....
T Consensus 81 ~n~iGl~N~~~~s~~g~~~~l~~i~~~k~~~~~~pvIaSi~~~~s~~~~~~~a~~~e~~GaD~iELNiSCPn~~~----- 155 (385)
T PLN02495 81 GRVIGWQNIELISDRPFETMLAEFKQLKEEYPDRILIASIMEEYNKDAWEEIIERVEETGVDALEINFSCPHGMP----- 155 (385)
T ss_pred cccccccCcccccccCHHHHHHHHHHHHhhCCCCcEEEEccCCCCHHHHHHHHHHHHhcCCCEEEEECCCCCCCC-----
Confidence 0 0 122 221 1223 367777754467888899999999999999999999997310
Q ss_pred hhhcCCCCccccccccccccCccccccchhhHHHhhhccCccc--cH-HHHHhhcCCCEEEEecCCH----HHHHHHHHc
Q 017718 170 KNRFTLPPFLTLKNFQGLDLGKMDEANDSGLAAYVAGQIDRSL--SW-KWLQTITKLPILVKGVLTA----EDARIAVQA 242 (367)
Q Consensus 170 ~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~--~~-~~l~~~~~~Pv~vK~v~~~----~~a~~~~~~ 242 (367)
.+.. +..+.. +++. .. +++++.+++||++|+..+. +.|+.+.++
T Consensus 156 -----------~r~~----------------g~~~gq--~~e~~~~i~~~Vk~~~~iPv~vKLsPn~t~i~~ia~aa~~~ 206 (385)
T PLN02495 156 -----------ERKM----------------GAAVGQ--DCDLLEEVCGWINAKATVPVWAKMTPNITDITQPARVALKS 206 (385)
T ss_pred -----------cCcc----------------chhhcc--CHHHHHHHHHHHHHhhcCceEEEeCCChhhHHHHHHHHHHh
Confidence 0000 000111 2222 22 3788888999999999654 447889999
Q ss_pred CCcEEEEcCCCC--CCC----------------CCc---cc----hHHHHHHHHHHhc----CCCcEEEecCCCCHHHHH
Q 017718 243 GAAGIIVSNHGA--RQL----------------DYV---PA----TIMALEEVVKATQ----GRIPVFLDGGVRRGTDVF 293 (367)
Q Consensus 243 G~d~i~vs~~gg--~~~----------------~~~---~~----~~~~l~~i~~~~~----~~~~via~GGI~~~~dv~ 293 (367)
|+|+|++.|+-. ..+ .+| ++ .+..+.++++.++ .++|||+.|||.+++|++
T Consensus 207 Gadgi~liNT~~~~~~ID~~t~~p~~~~~~~~~~GGlSG~alkpiAl~~v~~i~~~~~~~~~~~ipIiGvGGI~s~~Da~ 286 (385)
T PLN02495 207 GCEGVAAINTIMSVMGINLDTLRPEPCVEGYSTPGGYSSKAVRPIALAKVMAIAKMMKSEFPEDRSLSGIGGVETGGDAA 286 (385)
T ss_pred CCCEEEEecccCcccccccccCccccccCCCCCCCCccchhhhHHHHHHHHHHHHHHhhhccCCCcEEEECCCCCHHHHH
Confidence 999999998532 111 111 11 2344555666553 258999999999999999
Q ss_pred HHHHcCCCEEEechHHHHHhhccChHHHHHHHHHHHHHHHHHHHHhCCCChhhhcccce
Q 017718 294 KALALGASGIFIGRPVVYSLAAEGEKGVRRVLEMLREEFELAMALSGCRSLKEITRDHI 352 (367)
Q Consensus 294 kal~lGAd~V~ig~~~l~~l~~~G~~~v~~~i~~l~~el~~~m~~~G~~si~~l~~~~l 352 (367)
++|.+||++||+++.+++ +|+. +++.+.+||+.+|...|+++++|+++..+
T Consensus 287 e~i~aGAs~VQv~Ta~~~----~Gp~----vi~~i~~~L~~~m~~~G~~si~e~~G~~~ 337 (385)
T PLN02495 287 EFILLGADTVQVCTGVMM----HGYP----LVKNLCAELQDFMKKHNFSSIEDFRGASL 337 (385)
T ss_pred HHHHhCCCceeEeeeeee----cCcH----HHHHHHHHHHHHHHHcCCCCHHHHhCcCC
Confidence 999999999999999886 4764 77889999999999999999999997654
|
|
| >TIGR00742 yjbN tRNA dihydrouridine synthase A | Back alignment and domain information |
|---|
Probab=99.88 E-value=4.2e-21 Score=185.95 Aligned_cols=234 Identities=19% Similarity=0.263 Sum_probs=163.1
Q ss_pred ceEeCcccchhccCChhhHHHHHHHHHcCC-ceeecCCCCC------CHHHHHhhCC--CceEEEEeecCCHHHHHHHHH
Q 017718 73 PIMIAPTAMQKMAHPEGEYATARAASAAGT-IMTLSSWSTS------SVEEVASTGP--GIRFFQLYVYKDRNVVAQLVR 143 (367)
Q Consensus 73 Pi~iAPm~~~~l~~~~~e~~~a~aa~~~G~-~~~vs~~~~~------~~e~i~~~~~--~~~~~QLy~~~d~~~~~~~l~ 143 (367)
|+++|||.+.+ |.++++.|+++|. .+++++|.+. ...+.....+ .|..+||+ +.|++.+.+.++
T Consensus 2 ~~~lAPM~g~T------d~~fR~l~~~~g~~~~~~TEMv~a~~l~~~~~~~~l~~~~~e~p~~vQl~-g~~p~~~~~aA~ 74 (318)
T TIGR00742 2 RFSVAPMLDWT------DRHFRYFLRLLSKHTLLYTEMITAKAIIHGDKKDILKFSPEESPVALQLG-GSDPNDLAKCAK 74 (318)
T ss_pred CEEEECCCCCc------CHHHHHHHHHhCCCCEEEeCCEEEhhhhccCHHHHcccCCCCCcEEEEEc-cCCHHHHHHHHH
Confidence 79999999876 8899999999998 7888888332 1122222223 68999998 789999999999
Q ss_pred HHHHcCCcEEEEecCCCCCCchhHHhhhhcCCCCccccccccccccCccccccchhhHHHhhhccCccc--cH-HHHHhh
Q 017718 144 RAERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLTLKNFQGLDLGKMDEANDSGLAAYVAGQIDRSL--SW-KWLQTI 220 (367)
Q Consensus 144 ra~~~G~~ai~itvd~p~~g~r~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~--~~-~~l~~~ 220 (367)
.+++.|++.|+||++||+.- +... +.+..++. ++++ ++ +.+++.
T Consensus 75 ~~~~~g~d~IDlN~GCP~~~---------------v~~~----------------g~Gs~Ll~--~p~~~~~iv~av~~~ 121 (318)
T TIGR00742 75 IAEKRGYDEINLNVGCPSDR---------------VQNG----------------NFGACLMG--NADLVADCVKAMQEA 121 (318)
T ss_pred HHHhCCCCEEEEECCCCHHH---------------hCCC----------------CeehHhhc--CHHHHHHHHHHHHHH
Confidence 99999999999999999740 0000 01122333 3443 22 378888
Q ss_pred cCCCEEEEecCC----------HHHHHHHHHcCCcEEEEcCCCCCC---CCC-------ccchHHHHHHHHHHhcCCCcE
Q 017718 221 TKLPILVKGVLT----------AEDARIAVQAGAAGIIVSNHGARQ---LDY-------VPATIMALEEVVKATQGRIPV 280 (367)
Q Consensus 221 ~~~Pv~vK~v~~----------~~~a~~~~~~G~d~i~vs~~gg~~---~~~-------~~~~~~~l~~i~~~~~~~~~v 280 (367)
+++||.+|.... .+.++.+.++|++.|+| ||++. ... .+..++.+.++++.+. ++||
T Consensus 122 ~~~PVsvKiR~g~~~~~~~~~~~~~~~~l~~~G~~~itv--HgRt~~~qg~sg~~~~~~~~~~~~~i~~vk~~~~-~ipV 198 (318)
T TIGR00742 122 VNIPVTVKHRIGIDPLDSYEFLCDFVEIVSGKGCQNFIV--HARKAWLSGLSPKENREIPPLRYERVYQLKKDFP-HLTI 198 (318)
T ss_pred hCCCeEEEEecCCCCcchHHHHHHHHHHHHHcCCCEEEE--eCCchhhcCCCccccccCCchhHHHHHHHHHhCC-CCcE
Confidence 899999999742 12378889999999999 66542 111 2336778888877653 6999
Q ss_pred EEecCCCCHHHHHHHHHcCCCEEEech-----HHHHHhhc----cC---hHHHHHHHHHHHHHHHHHHHHhCCCChhhhc
Q 017718 281 FLDGGVRRGTDVFKALALGASGIFIGR-----PVVYSLAA----EG---EKGVRRVLEMLREEFELAMALSGCRSLKEIT 348 (367)
Q Consensus 281 ia~GGI~~~~dv~kal~lGAd~V~ig~-----~~l~~l~~----~G---~~~v~~~i~~l~~el~~~m~~~G~~si~~l~ 348 (367)
|++|||.|.+|+.+++. |||+||||| ||+|.... +| .....+.++.+.++++..... ...+.+++
T Consensus 199 i~NGdI~s~~da~~~l~-g~dgVMigRgal~nP~if~~~~~~l~~~~~~~~~~~e~~~~~~~~~~~~~~~--~~~~~~~r 275 (318)
T TIGR00742 199 EINGGIKNSEQIKQHLS-HVDGVMVGREAYENPYLLANVDREIFNETDEILTRKEIVEQMLPYIEEYLSQ--GLSLNHIT 275 (318)
T ss_pred EEECCcCCHHHHHHHHh-CCCEEEECHHHHhCCHHHHHHHHHhcCCCCCCCCHHHHHHHHHHHHHHHHHc--cchHHHHH
Confidence 99999999999999996 999999999 45554321 12 112345566666666654333 23556666
Q ss_pred ccce
Q 017718 349 RDHI 352 (367)
Q Consensus 349 ~~~l 352 (367)
++..
T Consensus 276 k~~~ 279 (318)
T TIGR00742 276 RHLL 279 (318)
T ss_pred HHHH
Confidence 5543
|
Members of this family show a distant relationship to alpha/beta (TIM) barrel enzymes such as dihydroorotate dehydrogenase and glycolate oxidase. |
| >TIGR00737 nifR3_yhdG putative TIM-barrel protein, nifR3 family | Back alignment and domain information |
|---|
Probab=99.87 E-value=1.1e-20 Score=183.56 Aligned_cols=243 Identities=21% Similarity=0.252 Sum_probs=172.3
Q ss_pred cCeeeccceEeCcccchhccCChhhHHHHHHHHHcCCceeecCCCCC-C-------HHHHHhhCC--CceEEEEeecCCH
Q 017718 66 LGFKISMPIMIAPTAMQKMAHPEGEYATARAASAAGTIMTLSSWSTS-S-------VEEVASTGP--GIRFFQLYVYKDR 135 (367)
Q Consensus 66 ~g~~l~~Pi~iAPm~~~~l~~~~~e~~~a~aa~~~G~~~~vs~~~~~-~-------~e~i~~~~~--~~~~~QLy~~~d~ 135 (367)
.+..+..|+++|||.+.+ +.++++.|+++|..+++++|-+. + ..+.....+ .|..+||. +.++
T Consensus 2 ~~~~~~~~l~lAPm~~~t------~~~fR~l~~~~g~~~~~temi~~~~l~~~~~~~~~~~~~~~~~~p~i~ql~-g~~~ 74 (319)
T TIGR00737 2 GNIQLKSRVVLAPMAGVT------DSPFRRLVAEYGAGLTVCEMVSSEAIVYDSQRTMRLLDIAEDETPISVQLF-GSDP 74 (319)
T ss_pred CCccCCCCEEecCCCCCC------cHHHHHHHHHHCCCEEEECCEEEhhhhcCCHHHHHHhhcCCccceEEEEEe-CCCH
Confidence 567889999999998875 78999999999999888887321 1 111222222 57889997 7899
Q ss_pred HHHHHHHHHHHHcCCcEEEEecCCCCCCchhHHhhhhcCCCCccccccccccccCccccccchhhHHHhhhccCccc--c
Q 017718 136 NVVAQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLTLKNFQGLDLGKMDEANDSGLAAYVAGQIDRSL--S 213 (367)
Q Consensus 136 ~~~~~~l~ra~~~G~~ai~itvd~p~~g~r~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~--~ 213 (367)
+.+.+.+++++++|+++|.+|++||.. +|. ..+ . ++.+.. ++.+ .
T Consensus 75 ~~~~~aa~~~~~~G~d~IelN~gcP~~-~~~--------------~~~------------~----Gs~l~~--~~~~~~e 121 (319)
T TIGR00737 75 DTMAEAAKINEELGADIIDINMGCPVP-KIT--------------KKG------------A----GSALLR--DPDLIGK 121 (319)
T ss_pred HHHHHHHHHHHhCCCCEEEEECCCCHH-Hhc--------------CCC------------c----cchHhC--CHHHHHH
Confidence 999999999999999999999999952 211 000 0 111111 2333 2
Q ss_pred H-HHHHhhcCCCEEEEecC--------CHHHHHHHHHcCCcEEEEcCCCCCCCCCccchHHHHHHHHHHhcCCCcEEEec
Q 017718 214 W-KWLQTITKLPILVKGVL--------TAEDARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDG 284 (367)
Q Consensus 214 ~-~~l~~~~~~Pv~vK~v~--------~~~~a~~~~~~G~d~i~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~~~via~G 284 (367)
+ +.+++.+++||.+|... ..+.++.+.++|+|+|++++....+...++..++.+.++++.+ ++|||++|
T Consensus 122 i~~~vr~~~~~pv~vKir~g~~~~~~~~~~~a~~l~~~G~d~i~vh~r~~~~~~~~~~~~~~i~~i~~~~--~ipvi~nG 199 (319)
T TIGR00737 122 IVKAVVDAVDIPVTVKIRIGWDDAHINAVEAARIAEDAGAQAVTLHGRTRAQGYSGEANWDIIARVKQAV--RIPVIGNG 199 (319)
T ss_pred HHHHHHhhcCCCEEEEEEcccCCCcchHHHHHHHHHHhCCCEEEEEcccccccCCCchhHHHHHHHHHcC--CCcEEEeC
Confidence 2 37888889999999852 1355788999999999995422122334567888999998877 69999999
Q ss_pred CCCCHHHHHHHHH-cCCCEEEechHHHH-----Hhh----ccCh----HHHHHHHHHHHHHHHHHHHHhCCC-Chhhhcc
Q 017718 285 GVRRGTDVFKALA-LGASGIFIGRPVVY-----SLA----AEGE----KGVRRVLEMLREEFELAMALSGCR-SLKEITR 349 (367)
Q Consensus 285 GI~~~~dv~kal~-lGAd~V~ig~~~l~-----~l~----~~G~----~~v~~~i~~l~~el~~~m~~~G~~-si~~l~~ 349 (367)
||.+++|+.+++. .|||+||+||+++. .-. ..|+ ....+.++.+.++++...+..|.. .+..+++
T Consensus 200 gI~~~~da~~~l~~~gad~VmigR~~l~~P~l~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~r~ 279 (319)
T TIGR00737 200 DIFSPEDAKAMLETTGCDGVMIGRGALGNPWLFRQIEQYLTTGKYKPPPTFAEKLDAILRHLQLLADYYGESKGLRIARK 279 (319)
T ss_pred CCCCHHHHHHHHHhhCCCEEEEChhhhhCChHHHHHHHHHhCCCCCCCCCHHHHHHHHHHHHHHHHHHhCcchHHHHHHH
Confidence 9999999999994 79999999996653 211 1121 134456677777777777777642 3555554
Q ss_pred c
Q 017718 350 D 350 (367)
Q Consensus 350 ~ 350 (367)
+
T Consensus 280 ~ 280 (319)
T TIGR00737 280 H 280 (319)
T ss_pred H
Confidence 4
|
Members of this family show a distant relationship to alpha/beta (TIM) barrel enzymes such as dihydroorotate dehydrogenase and glycolate oxidase. |
| >cd02940 DHPD_FMN Dihydropyrimidine dehydrogenase (DHPD) FMN-binding domain | Back alignment and domain information |
|---|
Probab=99.87 E-value=9.2e-21 Score=182.60 Aligned_cols=224 Identities=23% Similarity=0.305 Sum_probs=154.2
Q ss_pred ccceeEcCeeeccceEeCcccchhccCChhhHHHHHHHHHcCCceeec-CCCCC--------------------------
Q 017718 60 DMNTTVLGFKISMPIMIAPTAMQKMAHPEGEYATARAASAAGTIMTLS-SWSTS-------------------------- 112 (367)
Q Consensus 60 d~st~i~g~~l~~Pi~iAPm~~~~l~~~~~e~~~a~aa~~~G~~~~vs-~~~~~-------------------------- 112 (367)
|++|+++|+++++||++|+-... .+....+.+...|..+++. |....
T Consensus 1 ~l~~~~~Gl~l~nPi~~aag~~~------~~~~~~~~~~~~G~Gavv~kti~~~~~~~gn~~pr~~~~~~~~~n~~g~~n 74 (299)
T cd02940 1 DLSVTFCGIKFPNPFGLASAPPT------TSYPMIRRAFEAGWGGAVTKTLGLDKDIVTNVSPRIARLRTSGRGQIGFNN 74 (299)
T ss_pred CCceEECCEEcCCCCEeCCcCCC------CCHHHHHHHHHhCCCEEEeccccCcCCCCCCCCCeEEEeCCCchhcccccC
Confidence 68999999999999999993222 1344555555557765542 21110
Q ss_pred -------CHHH----HH---hhCC-CceEEEEeecCCHHHHHHHHHHHHHcCCcEEEEecCCCCCCchhHHhhhhcCCCC
Q 017718 113 -------SVEE----VA---STGP-GIRFFQLYVYKDRNVVAQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFTLPP 177 (367)
Q Consensus 113 -------~~e~----i~---~~~~-~~~~~QLy~~~d~~~~~~~l~ra~~~G~~ai~itvd~p~~g~r~~~~~~~~~~p~ 177 (367)
.++. +. ...+ .|...|++-..+++.+.+.++++++.|++++.+|+.||..-.+
T Consensus 75 ~e~~s~~~~~~~~~~~~~~~~~~~~~p~i~si~G~~~~~~~~~~a~~~~~~gad~ielN~sCP~~~~~------------ 142 (299)
T cd02940 75 IELISEKPLEYWLKEIRELKKDFPDKILIASIMCEYNKEDWTELAKLVEEAGADALELNFSCPHGMPE------------ 142 (299)
T ss_pred CccccccCHHHHHHHHHHHHhhCCCCeEEEEecCCCCHHHHHHHHHHHHhcCCCEEEEECCCCCCCCC------------
Confidence 0121 11 1122 5788999733388888899999999999999999999974110
Q ss_pred ccccccccccccCccccccchhhHHHhhhccCccc--cH-HHHHhhcCCCEEEEecCCH----HHHHHHHHcCCcEEEEc
Q 017718 178 FLTLKNFQGLDLGKMDEANDSGLAAYVAGQIDRSL--SW-KWLQTITKLPILVKGVLTA----EDARIAVQAGAAGIIVS 250 (367)
Q Consensus 178 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~--~~-~~l~~~~~~Pv~vK~v~~~----~~a~~~~~~G~d~i~vs 250 (367)
++. +..+.. +++. ++ +++++.+++||++|+..+. +.++.+.++|+|+|+++
T Consensus 143 ----~~~----------------G~~l~~--~~~~~~~iv~~v~~~~~~Pv~vKl~~~~~~~~~~a~~~~~~Gadgi~~~ 200 (299)
T cd02940 143 ----RGM----------------GAAVGQ--DPELVEEICRWVREAVKIPVIAKLTPNITDIREIARAAKEGGADGVSAI 200 (299)
T ss_pred ----CCC----------------chhhcc--CHHHHHHHHHHHHHhcCCCeEEECCCCchhHHHHHHHHHHcCCCEEEEe
Confidence 000 001111 2222 22 3788888999999998654 66888999999999988
Q ss_pred CCCCC---------------------CCCCccc----hHHHHHHHHHHhcCCCcEEEecCCCCHHHHHHHHHcCCCEEEe
Q 017718 251 NHGAR---------------------QLDYVPA----TIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFI 305 (367)
Q Consensus 251 ~~gg~---------------------~~~~~~~----~~~~l~~i~~~~~~~~~via~GGI~~~~dv~kal~lGAd~V~i 305 (367)
|+... +..+|++ +++.+.++++.+..++|||++|||++++|+.++|.+|||+||+
T Consensus 201 Nt~~~~~~id~~~~~~~~~~~~~~~~gg~sG~a~~p~~l~~v~~~~~~~~~~ipIig~GGI~~~~da~~~l~aGA~~V~i 280 (299)
T cd02940 201 NTVNSLMGVDLDGTPPAPGVEGKTTYGGYSGPAVKPIALRAVSQIARAPEPGLPISGIGGIESWEDAAEFLLLGASVVQV 280 (299)
T ss_pred cccccccccccccCCccccccCCCCcCcccCCCcchHHHHHHHHHHHhcCCCCcEEEECCCCCHHHHHHHHHcCCChheE
Confidence 75311 1122333 4788999988876579999999999999999999999999999
Q ss_pred chHHHHHhhccChHHHHHHHHHHHHH
Q 017718 306 GRPVVYSLAAEGEKGVRRVLEMLREE 331 (367)
Q Consensus 306 g~~~l~~l~~~G~~~v~~~i~~l~~e 331 (367)
||.+++ +|+. ++..+.+|
T Consensus 281 ~ta~~~----~g~~----~~~~i~~~ 298 (299)
T cd02940 281 CTAVMN----QGFT----IVDDMCTG 298 (299)
T ss_pred ceeecc----cCCc----HHHHHhhh
Confidence 998876 4664 44445444
|
DHPD catalyzes the first step in pyrimidine degradation: the NADPH-dependent reduction of uracil and thymine to the corresponding 5,6-dihydropyrimidines. DHPD contains two FAD, two FMN, and eight [4Fe-4S] clusters, arranged in two electron transfer chains that pass the dimer interface twice. Two of the Fe-S clusters show a hitherto unobserved coordination involving a glutamine residue. |
| >PRK05096 guanosine 5'-monophosphate oxidoreductase; Provisional | Back alignment and domain information |
|---|
Probab=99.87 E-value=1.8e-20 Score=179.05 Aligned_cols=259 Identities=19% Similarity=0.240 Sum_probs=182.0
Q ss_pred ccccceeeccccC--CCCCCccceeEc-----CeeeccceEeCcccchhccCChhhHHHHHHHHHcCCceeecCCCCCCH
Q 017718 42 AFSRILFRPRILI--DVSKIDMNTTVL-----GFKISMPIMIAPTAMQKMAHPEGEYATARAASAAGTIMTLSSWSTSSV 114 (367)
Q Consensus 42 ~~~~i~l~pr~l~--~~~~vd~st~i~-----g~~l~~Pi~iAPm~~~~l~~~~~e~~~a~aa~~~G~~~~vs~~~~~~~ 114 (367)
.||++.|+|+... .-+++|++.+|. ...+..|++-|+|--. ++..+|.+.+++|...++.- ..++
T Consensus 10 ~f~DVll~P~~s~v~sRsevdl~~~~~~~~~~~~~~giPii~AnMdTV------~~~~mA~~la~~g~~~~iHk--~~~~ 81 (346)
T PRK05096 10 GFKDVLIRPKRSTLKSRSDVELERQFTFKHSGQSWSGVPIIAANMDTV------GTFEMAKALASFDILTAVHK--HYSV 81 (346)
T ss_pred CceeEEEecCcCccccHHHceecceeeeecccccccCCceEecCCCcc------ccHHHHHHHHHCCCeEEEec--CCCH
Confidence 7999999997553 336899987765 4556799999999544 47899999999999998853 3456
Q ss_pred HHHHh----hCCC-ceEEEEeecCCHHHHHHHHHHHHH--cCCcEEEEecCCCCCCchhHHhhhhcCCCCcccccccccc
Q 017718 115 EEVAS----TGPG-IRFFQLYVYKDRNVVAQLVRRAER--AGFKAIALTVDTPRLGRREADIKNRFTLPPFLTLKNFQGL 187 (367)
Q Consensus 115 e~i~~----~~~~-~~~~QLy~~~d~~~~~~~l~ra~~--~G~~ai~itvd~p~~g~r~~~~~~~~~~p~~~~~~~~~~~ 187 (367)
|+..+ ..+. ...+-+-.+..++.. +.++...+ +|++.|+| |+.. |++
T Consensus 82 e~~~~fv~~~~~~~~~~~~vavG~~~~d~-er~~~L~~~~~g~D~ivi--D~Ah----------Ghs------------- 135 (346)
T PRK05096 82 EEWAAFVNNSSADVLKHVMVSTGTSDADF-EKTKQILALSPALNFICI--DVAN----------GYS------------- 135 (346)
T ss_pred HHHHHHHHhccccccceEEEEecCCHHHH-HHHHHHHhcCCCCCEEEE--ECCC----------CcH-------------
Confidence 65332 1211 111112223333333 33444444 58888876 4321 110
Q ss_pred ccCccccccchhhHHHhhhccCccccHHHHHhhc-CCCEEEEecCCHHHHHHHHHcCCcEEEEcCCCCC----CC--CCc
Q 017718 188 DLGKMDEANDSGLAAYVAGQIDRSLSWKWLQTIT-KLPILVKGVLTAEDARIAVQAGAAGIIVSNHGAR----QL--DYV 260 (367)
Q Consensus 188 ~~~~~~~~~~~~~~~~~~~~~d~~~~~~~l~~~~-~~Pv~vK~v~~~~~a~~~~~~G~d~i~vs~~gg~----~~--~~~ 260 (367)
.++.. ..+++|+.+ +++|+...+.+.+.++.++++|||+|.|.-..|. +. ..|
T Consensus 136 --------------~~~i~------~ik~ik~~~P~~~vIaGNV~T~e~a~~Li~aGAD~vKVGIGpGSiCtTr~vtGvG 195 (346)
T PRK05096 136 --------------EHFVQ------FVAKAREAWPDKTICAGNVVTGEMVEELILSGADIVKVGIGPGSVCTTRVKTGVG 195 (346)
T ss_pred --------------HHHHH------HHHHHHHhCCCCcEEEecccCHHHHHHHHHcCCCEEEEcccCCccccCccccccC
Confidence 00000 234888877 5899999999999999999999999998643342 11 246
Q ss_pred cchHHHHHHHHHHhcC-CCcEEEecCCCCHHHHHHHHHcCCCEEEechHHH--------------------HHhhc----
Q 017718 261 PATIMALEEVVKATQG-RIPVFLDGGVRRGTDVFKALALGASGIFIGRPVV--------------------YSLAA---- 315 (367)
Q Consensus 261 ~~~~~~l~~i~~~~~~-~~~via~GGI~~~~dv~kal~lGAd~V~ig~~~l--------------------~~l~~---- 315 (367)
.|.+.++.+++++... .+|||+||||+++.|++|||++|||+||+|+.|- ++++.
T Consensus 196 ~PQltAV~~~a~~a~~~gvpiIADGGi~~sGDI~KAlaaGAd~VMlGsllAGt~EsPGe~~~~~G~~~K~yrGMgS~~Am 275 (346)
T PRK05096 196 YPQLSAVIECADAAHGLGGQIVSDGGCTVPGDVAKAFGGGADFVMLGGMLAGHEESGGEIVEENGEKFMLFYGMSSESAM 275 (346)
T ss_pred hhHHHHHHHHHHHHHHcCCCEEecCCcccccHHHHHHHcCCCEEEeChhhcCcccCCCcEEEECCEEEEEEeccccHHHH
Confidence 7788889888876543 6999999999999999999999999999999771 12111
Q ss_pred -------------cCh-------HHHHHHHHHHHHHHHHHHHHhCCCChhhhccc--ceee
Q 017718 316 -------------EGE-------KGVRRVLEMLREEFELAMALSGCRSLKEITRD--HIVT 354 (367)
Q Consensus 316 -------------~G~-------~~v~~~i~~l~~el~~~m~~~G~~si~~l~~~--~l~~ 354 (367)
+|. ..+.+++..+...|+..|.++|..+|.||+.. ++..
T Consensus 276 ~~~~g~~~ry~~~EG~~~~Vp~kG~v~~~i~~l~gGlrs~m~Y~Ga~~i~el~~~a~fv~v 336 (346)
T PRK05096 276 KRHVGGVAEYRAAEGKTVKLPLRGPVENTARDILGGLRSACTYVGASRLKELTKRTTFIRV 336 (346)
T ss_pred hhccCcccccccccCceEEeccCCcHHHHHHHHHHHHHHHHcccCcCcHHHHHhCCeEEEE
Confidence 111 02889999999999999999999999999643 4444
|
|
| >PLN02826 dihydroorotate dehydrogenase | Back alignment and domain information |
|---|
Probab=99.87 E-value=1.1e-19 Score=180.83 Aligned_cols=123 Identities=29% Similarity=0.455 Sum_probs=101.5
Q ss_pred cCCCEEEEecC--CHHH----HHHHHHcCCcEEEEcCCC-CC----------CCCC---cc----chHHHHHHHHHHhcC
Q 017718 221 TKLPILVKGVL--TAED----ARIAVQAGAAGIIVSNHG-AR----------QLDY---VP----ATIMALEEVVKATQG 276 (367)
Q Consensus 221 ~~~Pv~vK~v~--~~~~----a~~~~~~G~d~i~vs~~g-g~----------~~~~---~~----~~~~~l~~i~~~~~~ 276 (367)
.++||++|+.. +.++ |+.+.++|+|+|+++|+- ++ +..+ |+ .+.+.++++++.+++
T Consensus 261 ~~~Pv~vKlaPdl~~~di~~ia~~a~~~G~dGIi~~NTt~~r~~dl~~~~~~~~~GGlSG~pl~~~sl~~v~~l~~~~~~ 340 (409)
T PLN02826 261 GPPPLLVKIAPDLSKEDLEDIAAVALALGIDGLIISNTTISRPDSVLGHPHADEAGGLSGKPLFDLSTEVLREMYRLTRG 340 (409)
T ss_pred cCCceEEecCCCCCHHHHHHHHHHHHHcCCCEEEEEcccCcCccchhcccccccCCCcCCccccHHHHHHHHHHHHHhCC
Confidence 46899999964 4334 888999999999999942 11 1112 22 266788899888877
Q ss_pred CCcEEEecCCCCHHHHHHHHHcCCCEEEechHHHHHhhccChHHHHHHHHHHHHHHHHHHHHhCCCChhhhcccc
Q 017718 277 RIPVFLDGGVRRGTDVFKALALGASGIFIGRPVVYSLAAEGEKGVRRVLEMLREEFELAMALSGCRSLKEITRDH 351 (367)
Q Consensus 277 ~~~via~GGI~~~~dv~kal~lGAd~V~ig~~~l~~l~~~G~~~v~~~i~~l~~el~~~m~~~G~~si~~l~~~~ 351 (367)
++|||++|||.+++|++++|.+||++||++|+++| +|+. ++..+++||.++|...|+++++|+.+..
T Consensus 341 ~ipIIgvGGI~sg~Da~e~i~AGAs~VQv~Ta~~~----~Gp~----~i~~I~~eL~~~l~~~G~~si~e~iG~~ 407 (409)
T PLN02826 341 KIPLVGCGGVSSGEDAYKKIRAGASLVQLYTAFAY----EGPA----LIPRIKAELAACLERDGFKSIQEAVGAD 407 (409)
T ss_pred CCcEEEECCCCCHHHHHHHHHhCCCeeeecHHHHh----cCHH----HHHHHHHHHHHHHHHcCCCCHHHHhCcC
Confidence 89999999999999999999999999999999988 4764 7788999999999999999999998743
|
|
| >COG0167 PyrD Dihydroorotate dehydrogenase [Nucleotide transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.86 E-value=4.1e-20 Score=176.64 Aligned_cols=173 Identities=25% Similarity=0.397 Sum_probs=132.4
Q ss_pred CHHHHHHHHHHHHHcC-CcEEEEecCCCCCCchhHHhhhhcCCCCccccccccccccCccccccchhhHHHhhhccCccc
Q 017718 134 DRNVVAQLVRRAERAG-FKAIALTVDTPRLGRREADIKNRFTLPPFLTLKNFQGLDLGKMDEANDSGLAAYVAGQIDRSL 212 (367)
Q Consensus 134 d~~~~~~~l~ra~~~G-~~ai~itvd~p~~g~r~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~ 212 (367)
..+...+.+...++++ ++++.+|+.||.. |. .+.+.. +++.
T Consensus 107 ~~~~~~d~~~~~~~~~~ad~ielNiScPnt-------------~g-----------------------~~~l~~--~~e~ 148 (310)
T COG0167 107 SEEAWADYARLLEEAGDADAIELNISCPNT-------------PG-----------------------GRALGQ--DPEL 148 (310)
T ss_pred cHHHHHHHHHHHHhcCCCCEEEEEccCCCC-------------CC-----------------------hhhhcc--CHHH
Confidence 3455666777777777 7888888888862 10 001110 2222
Q ss_pred --cH-HHHHhhcCCCEEEEecCCHH----HHHHHHHcCCcEEEEcCCCC-CC-------------CCC---cc----chH
Q 017718 213 --SW-KWLQTITKLPILVKGVLTAE----DARIAVQAGAAGIIVSNHGA-RQ-------------LDY---VP----ATI 264 (367)
Q Consensus 213 --~~-~~l~~~~~~Pv~vK~v~~~~----~a~~~~~~G~d~i~vs~~gg-~~-------------~~~---~~----~~~ 264 (367)
.. +++++..++||++|+..+.+ .|+.+.++|+|+|++.|+-. +. ..+ |+ -+.
T Consensus 149 l~~l~~~vk~~~~~Pv~vKl~P~~~di~~iA~~~~~~g~Dgl~~~NT~~~~~~id~~~~~~~~~~~~GGLSG~~ikp~al 228 (310)
T COG0167 149 LEKLLEAVKAATKVPVFVKLAPNITDIDEIAKAAEEAGADGLIAINTTKSGMKIDLETKKPVLANETGGLSGPPLKPIAL 228 (310)
T ss_pred HHHHHHHHHhcccCceEEEeCCCHHHHHHHHHHHHHcCCcEEEEEeeccccccccccccccccCcCCCCcCcccchHHHH
Confidence 22 38888889999999997653 38899999999999999532 11 012 22 266
Q ss_pred HHHHHHHHHhcCCCcEEEecCCCCHHHHHHHHHcCCCEEEechHHHHHhhccChHHHHHHHHHHHHHHHHHHHHhCCCCh
Q 017718 265 MALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFIGRPVVYSLAAEGEKGVRRVLEMLREEFELAMALSGCRSL 344 (367)
Q Consensus 265 ~~l~~i~~~~~~~~~via~GGI~~~~dv~kal~lGAd~V~ig~~~l~~l~~~G~~~v~~~i~~l~~el~~~m~~~G~~si 344 (367)
..++++++.++.++|||+.|||.|++|+++.+++||++|||||++++ +|+. +++.+.++|.++|...|+.|+
T Consensus 229 ~~v~~l~~~~~~~ipIIGvGGI~s~~DA~E~i~aGA~~vQv~Tal~~----~Gp~----i~~~I~~~l~~~l~~~g~~si 300 (310)
T COG0167 229 RVVAELYKRLGGDIPIIGVGGIETGEDALEFILAGASAVQVGTALIY----KGPG----IVKEIIKGLARWLEEKGFESI 300 (310)
T ss_pred HHHHHHHHhcCCCCcEEEecCcCcHHHHHHHHHcCCchheeeeeeee----eCch----HHHHHHHHHHHHHHHcCCCCH
Confidence 78888888887789999999999999999999999999999999987 5774 788999999999999999999
Q ss_pred hhhcccce
Q 017718 345 KEITRDHI 352 (367)
Q Consensus 345 ~~l~~~~l 352 (367)
+|+++...
T Consensus 301 ~d~iG~~~ 308 (310)
T COG0167 301 QDIIGSAL 308 (310)
T ss_pred HHHhchhc
Confidence 99987654
|
|
| >PRK08318 dihydropyrimidine dehydrogenase subunit B; Validated | Back alignment and domain information |
|---|
Probab=99.86 E-value=4.5e-20 Score=185.75 Aligned_cols=245 Identities=21% Similarity=0.278 Sum_probs=170.7
Q ss_pred CccceeEcCeeeccceEeCcccchhccCChhhHHHHHHHHHcCCceeec-CCC----C----------------------
Q 017718 59 IDMNTTVLGFKISMPIMIAPTAMQKMAHPEGEYATARAASAAGTIMTLS-SWS----T---------------------- 111 (367)
Q Consensus 59 vd~st~i~g~~l~~Pi~iAPm~~~~l~~~~~e~~~a~aa~~~G~~~~vs-~~~----~---------------------- 111 (367)
.|++|+++|++|++||++|.-. +.. ....+.+.. +.|..+++. |.. +
T Consensus 2 ~~L~~~~~Gl~l~nPv~~aag~---~~~--~~~~~~~~~-~~g~Gavv~kti~~~~gn~~~pr~~~~~~~~~~~~g~~n~ 75 (420)
T PRK08318 2 ADLSITFCGIKSPNPFWLASAP---PTN--KYYNVARAF-EAGWGGVVWKTLGPPIVNVSSPRFGALVKEDRRFIGFNNI 75 (420)
T ss_pred CCceEEECCEecCCCcEeCCcC---CCC--CHHHHHHHH-HhCCCEEEEeecCCCCCCCCCCeEEEecCCCcccccccCc
Confidence 4789999999999999999732 111 123344444 356654431 110 0
Q ss_pred -----CCHHH----H---HhhCC-CceEEEEeecCCHHHHHHHHHHHHHcCCcEEEEecCCCCC-CchhHHhhhhcCCCC
Q 017718 112 -----SSVEE----V---ASTGP-GIRFFQLYVYKDRNVVAQLVRRAERAGFKAIALTVDTPRL-GRREADIKNRFTLPP 177 (367)
Q Consensus 112 -----~~~e~----i---~~~~~-~~~~~QLy~~~d~~~~~~~l~ra~~~G~~ai~itvd~p~~-g~r~~~~~~~~~~p~ 177 (367)
..++. + ....+ .+..+||....+.+.+.+.++.++++|+++|.+|+.||.. +.|
T Consensus 76 ~~~s~~~~~~~~~~~~~~~~~~~~~p~i~si~g~~~~~~~~~~a~~~~~~g~d~ielN~scP~~~~~~------------ 143 (420)
T PRK08318 76 ELITDRPLEVNLREIRRVKRDYPDRALIASIMVECNEEEWKEIAPLVEETGADGIELNFGCPHGMSER------------ 143 (420)
T ss_pred ccccccCHHHHHHHHHHHHhhCCCceEEEEeccCCCHHHHHHHHHHHHhcCCCEEEEeCCCCCCcccc------------
Confidence 01121 1 11222 5578999743378888899999999999999999999972 111
Q ss_pred ccccccccccccCccccccchhhHHHhhhccCccc--cH-HHHHhhcCCCEEEEecCCH----HHHHHHHHcCCcEEEEc
Q 017718 178 FLTLKNFQGLDLGKMDEANDSGLAAYVAGQIDRSL--SW-KWLQTITKLPILVKGVLTA----EDARIAVQAGAAGIIVS 250 (367)
Q Consensus 178 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~--~~-~~l~~~~~~Pv~vK~v~~~----~~a~~~~~~G~d~i~vs 250 (367)
+. +..+.. +++. .. +++++.+++||++|+..+. +.|+.+.++|+|+|++.
T Consensus 144 -----~~----------------g~~~~~--~~~~~~~i~~~v~~~~~~Pv~vKl~p~~~~~~~~a~~~~~~Gadgi~~~ 200 (420)
T PRK08318 144 -----GM----------------GSAVGQ--VPELVEMYTRWVKRGSRLPVIVKLTPNITDIREPARAAKRGGADAVSLI 200 (420)
T ss_pred -----CC----------------cccccC--CHHHHHHHHHHHHhccCCcEEEEcCCCcccHHHHHHHHHHCCCCEEEEe
Confidence 00 000111 2222 22 3778778899999998543 55788999999999976
Q ss_pred CCC-C-----------------C---CCCCccc----hHHHHHHHHHHhc-CCCcEEEecCCCCHHHHHHHHHcCCCEEE
Q 017718 251 NHG-A-----------------R---QLDYVPA----TIMALEEVVKATQ-GRIPVFLDGGVRRGTDVFKALALGASGIF 304 (367)
Q Consensus 251 ~~g-g-----------------~---~~~~~~~----~~~~l~~i~~~~~-~~~~via~GGI~~~~dv~kal~lGAd~V~ 304 (367)
|+- + + +..+|++ .++.+.++++.++ .++|||++|||.+++|++++|.+|||+||
T Consensus 201 Nt~~~~~~id~~~~~~~p~~~~~~~~gg~SG~a~~p~~l~~v~~~~~~~~~~~ipIig~GGI~s~~da~e~i~aGA~~Vq 280 (420)
T PRK08318 201 NTINSITGVDLDRMIPMPIVNGKSSHGGYCGPAVKPIALNMVAEIARDPETRGLPISGIGGIETWRDAAEFILLGAGTVQ 280 (420)
T ss_pred cccCccccccccccCCCceecCCCCcccccchhhhHHHHHHHHHHHhccccCCCCEEeecCcCCHHHHHHHHHhCCChhe
Confidence 641 1 1 1122444 5788888887663 27999999999999999999999999999
Q ss_pred echHHHHHhhccChHHHHHHHHHHHHHHHHHHHHhCCCChhhhcccce
Q 017718 305 IGRPVVYSLAAEGEKGVRRVLEMLREEFELAMALSGCRSLKEITRDHI 352 (367)
Q Consensus 305 ig~~~l~~l~~~G~~~v~~~i~~l~~el~~~m~~~G~~si~~l~~~~l 352 (367)
|||.+++ +|+. ++..+.+||+.+|...|+.++.++.+..+
T Consensus 281 i~ta~~~----~gp~----ii~~I~~~L~~~l~~~g~~si~e~iG~~~ 320 (420)
T PRK08318 281 VCTAAMQ----YGFR----IVEDMISGLSHYMDEKGFASLEDMVGLAV 320 (420)
T ss_pred eeeeecc----CCch----hHHHHHHHHHHHHHHcCcchHHHHhcccc
Confidence 9999886 4664 67789999999999999999999987544
|
|
| >PRK02506 dihydroorotate dehydrogenase 1A; Reviewed | Back alignment and domain information |
|---|
Probab=99.85 E-value=2.3e-19 Score=173.59 Aligned_cols=238 Identities=19% Similarity=0.186 Sum_probs=164.8
Q ss_pred ccceeEcCeeeccceEeCcccchhccCChhhHHHHHHHHHcCCceee-cCCCC--------------------------C
Q 017718 60 DMNTTVLGFKISMPIMIAPTAMQKMAHPEGEYATARAASAAGTIMTL-SSWST--------------------------S 112 (367)
Q Consensus 60 d~st~i~g~~l~~Pi~iAPm~~~~l~~~~~e~~~a~aa~~~G~~~~v-s~~~~--------------------------~ 112 (367)
|++|+++|.+|++||++|.-... .+....+.+.+.|..+++ .|... .
T Consensus 1 dL~~~~~Gl~l~NPv~~AsG~~~------~~~e~~~~~~~~g~Gavv~ktit~~p~~gn~~pr~~~~~~~~~N~~Gl~n~ 74 (310)
T PRK02506 1 STSTQIAGFKFDNCLMNAAGVYC------MTKEELEEVEASAAGAFVTKSATLEPRPGNPEPRYADTPLGSINSMGLPNL 74 (310)
T ss_pred CCceEECCEECCCCCEeCCCCCC------CCHHHHHHHHHcCCcEEEeCccCCCCCCCCCCCeEEECcchhhccCCCCCc
Confidence 68999999999999999984321 234455568888888775 23211 1
Q ss_pred CHH----HHHh---hCC-CceEEEEeecCCHHHHHHHHHHHHHcC-CcEEEEecCCCCCCchhHHhhhhcCCCCcccccc
Q 017718 113 SVE----EVAS---TGP-GIRFFQLYVYKDRNVVAQLVRRAERAG-FKAIALTVDTPRLGRREADIKNRFTLPPFLTLKN 183 (367)
Q Consensus 113 ~~e----~i~~---~~~-~~~~~QLy~~~d~~~~~~~l~ra~~~G-~~ai~itvd~p~~g~r~~~~~~~~~~p~~~~~~~ 183 (367)
..+ ++.+ ..+ .|...++. +.+.+...+.+++++++| ++++.+|+.||..... ..
T Consensus 75 g~~~~~~~i~~~~~~~~~~pvI~Si~-G~~~~~~~~~a~~~~~~g~ad~iElN~ScPn~~~~----------------~~ 137 (310)
T PRK02506 75 GFDYYLDYVLELQKKGPNKPHFLSVV-GLSPEETHTILKKIQASDFNGLVELNLSCPNVPGK----------------PQ 137 (310)
T ss_pred CHHHHHHHHHHHHhhcCCCCEEEEEE-eCcHHHHHHHHHHHhhcCCCCEEEEECCCCCCCCc----------------cc
Confidence 122 2221 111 45666775 556677778889998888 8999999999952110 00
Q ss_pred ccccccCccccccchhhHHHhhhccCccc--c-HHHHHhhcCCCEEEEecCCH---HHHHHH---HHcCCcEEEEcCCC-
Q 017718 184 FQGLDLGKMDEANDSGLAAYVAGQIDRSL--S-WKWLQTITKLPILVKGVLTA---EDARIA---VQAGAAGIIVSNHG- 253 (367)
Q Consensus 184 ~~~~~~~~~~~~~~~~~~~~~~~~~d~~~--~-~~~l~~~~~~Pv~vK~v~~~---~~a~~~---~~~G~d~i~vs~~g- 253 (367)
+ . .|++. . .+++++.+++||++|+..+. +.++.+ .+.|+++|...|.-
T Consensus 138 ~--------------------g--~d~~~~~~i~~~v~~~~~~Pv~vKlsp~~~~~~~a~~~~~~~~~g~~~i~~~nt~~ 195 (310)
T PRK02506 138 I--------------------A--YDFETTEQILEEVFTYFTKPLGVKLPPYFDIVHFDQAAAIFNKFPLAFVNCINSIG 195 (310)
T ss_pred c--------------------c--cCHHHHHHHHHHHHHhcCCccEEecCCCCCHHHHHHHHHHhCcCceEEEEEeccCC
Confidence 0 0 01111 2 23788888999999998543 223333 45677877776631
Q ss_pred -CC---------CC-----CC---cc----chHHHHHHHHHHhcCCCcEEEecCCCCHHHHHHHHHcCCCEEEechHHHH
Q 017718 254 -AR---------QL-----DY---VP----ATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFIGRPVVY 311 (367)
Q Consensus 254 -g~---------~~-----~~---~~----~~~~~l~~i~~~~~~~~~via~GGI~~~~dv~kal~lGAd~V~ig~~~l~ 311 (367)
|. .. .+ |+ ..+..+.++++.++.++|||++|||.+++|++|+|.+||++||+++++++
T Consensus 196 ~~~~iD~~~~~~~~~~~~~~GGlSG~~i~p~al~~v~~~~~~~~~~ipIig~GGI~s~~da~e~i~aGA~~Vqv~ta~~~ 275 (310)
T PRK02506 196 NGLVIDPEDETVVIKPKNGFGGIGGDYIKPTALANVRAFYQRLNPSIQIIGTGGVKTGRDAFEHILCGASMVQVGTALHK 275 (310)
T ss_pred CceEEecCCCCccccCCCCCCcCCchhccHHHHHHHHHHHHhcCCCCCEEEECCCCCHHHHHHHHHcCCCHHhhhHHHHH
Confidence 11 00 11 22 24566777777776679999999999999999999999999999999987
Q ss_pred HhhccChHHHHHHHHHHHHHHHHHHHHhCCCChhhhccc
Q 017718 312 SLAAEGEKGVRRVLEMLREEFELAMALSGCRSLKEITRD 350 (367)
Q Consensus 312 ~l~~~G~~~v~~~i~~l~~el~~~m~~~G~~si~~l~~~ 350 (367)
+|+. ++..+.+||+.+|...|+++++|+++.
T Consensus 276 ----~gp~----~~~~i~~~L~~~l~~~g~~si~e~~G~ 306 (310)
T PRK02506 276 ----EGPA----VFERLTKELKAIMAEKGYQSLEDFRGK 306 (310)
T ss_pred ----hChH----HHHHHHHHHHHHHHHhCCCCHHHHhCh
Confidence 3654 778899999999999999999999873
|
|
| >PRK05286 dihydroorotate dehydrogenase 2; Reviewed | Back alignment and domain information |
|---|
Probab=99.83 E-value=2.1e-18 Score=169.27 Aligned_cols=229 Identities=17% Similarity=0.208 Sum_probs=156.3
Q ss_pred CCCCccceeEcCeeeccceEeCcccchhccCChhhHHHHHHHHHcCCceee-cCCCCC----------------------
Q 017718 56 VSKIDMNTTVLGFKISMPIMIAPTAMQKMAHPEGEYATARAASAAGTIMTL-SSWSTS---------------------- 112 (367)
Q Consensus 56 ~~~vd~st~i~g~~l~~Pi~iAPm~~~~l~~~~~e~~~a~aa~~~G~~~~v-s~~~~~---------------------- 112 (367)
..+++++|+++|.++++||++|. |.. .+....+.+.+.|..+++ .|....
T Consensus 44 ~~~~~L~~~~~Gl~l~nPi~~As-G~~------~~~~~~~~~~~~G~Gavv~ktvt~~p~~gn~~pr~~~~~~~~~~~N~ 116 (344)
T PRK05286 44 YTDPRLPVTVMGLTFPNPVGLAA-GFD------KNGEAIDALGALGFGFVEVGTVTPRPQPGNPKPRLFRLPEDEALINR 116 (344)
T ss_pred CCCCCCceEECCEECCCCCEECC-CCC------CChHHHHHHHHcCCCEEEeCCcCCCCCCCCCCCCEEecccccccccC
Confidence 45788999999999999999877 322 244566778899888775 332110
Q ss_pred ------CHH----HHHhh-CCCceEEEEeecC------CHHHHHHHHHHHHHcCCcEEEEecCCCCC-CchhHHhhhhcC
Q 017718 113 ------SVE----EVAST-GPGIRFFQLYVYK------DRNVVAQLVRRAERAGFKAIALTVDTPRL-GRREADIKNRFT 174 (367)
Q Consensus 113 ------~~e----~i~~~-~~~~~~~QLy~~~------d~~~~~~~l~ra~~~G~~ai~itvd~p~~-g~r~~~~~~~~~ 174 (367)
.++ ++.+. ...|.++++.... ..+...++++++.+ +++++.+|+.||.. +.|. .
T Consensus 117 ~gl~n~g~~~~~~~l~~~~~~~pvivsI~~~~~~~~~~~~~d~~~~~~~~~~-~ad~lelN~scP~~~g~~~------~- 188 (344)
T PRK05286 117 MGFNNDGADALAERLKKAYRGIPLGINIGKNKDTPLEDAVDDYLICLEKLYP-YADYFTVNISSPNTPGLRD------L- 188 (344)
T ss_pred CCCCCHhHHHHHHHHHHhcCCCcEEEEEecCCCCCcccCHHHHHHHHHHHHh-hCCEEEEEccCCCCCCccc------c-
Confidence 011 22221 1235677775321 23444455555543 58999999999864 1110 0
Q ss_pred CCCccccccccccccCccccccchhhHHHhhhccCccc--c-HHHHHhhcC-----CCEEEEecCC------HHHHHHHH
Q 017718 175 LPPFLTLKNFQGLDLGKMDEANDSGLAAYVAGQIDRSL--S-WKWLQTITK-----LPILVKGVLT------AEDARIAV 240 (367)
Q Consensus 175 ~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~--~-~~~l~~~~~-----~Pv~vK~v~~------~~~a~~~~ 240 (367)
.++.. . .+++|+.++ +||++|+..+ .+.|+.+.
T Consensus 189 ---------------------------------~~~~~~~eiv~aVr~~~~~~~~~~PV~vKlsp~~~~~~~~~ia~~l~ 235 (344)
T PRK05286 189 ---------------------------------QYGEALDELLAALKEAQAELHGYVPLLVKIAPDLSDEELDDIADLAL 235 (344)
T ss_pred ---------------------------------cCHHHHHHHHHHHHHHHhccccCCceEEEeCCCCCHHHHHHHHHHHH
Confidence 01111 1 237777776 9999999843 24478889
Q ss_pred HcCCcEEEEcCCCC-------------CCCCCccc----hHHHHHHHHHHhcCCCcEEEecCCCCHHHHHHHHHcCCCEE
Q 017718 241 QAGAAGIIVSNHGA-------------RQLDYVPA----TIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGI 303 (367)
Q Consensus 241 ~~G~d~i~vs~~gg-------------~~~~~~~~----~~~~l~~i~~~~~~~~~via~GGI~~~~dv~kal~lGAd~V 303 (367)
++|+|+|+++|.-- ++..+|++ .++.+.++++.+++++|||++|||++++|+.+++.+|||+|
T Consensus 236 ~~Gadgi~~~nt~~~~~~~~~~~~~~~~gg~SG~~~~~~~l~~v~~l~~~~~~~ipIig~GGI~s~eda~e~l~aGAd~V 315 (344)
T PRK05286 236 EHGIDGVIATNTTLSRDGLKGLPNADEAGGLSGRPLFERSTEVIRRLYKELGGRLPIIGVGGIDSAEDAYEKIRAGASLV 315 (344)
T ss_pred HhCCcEEEEeCCccccccccccccCCCCCCcccHHHHHHHHHHHHHHHHHhCCCCCEEEECCCCCHHHHHHHHHcCCCHH
Confidence 99999999988420 01112332 56678888887766799999999999999999999999999
Q ss_pred EechHHHHHhhccChHHHHHHHHHHHHHHHHHHHHhC
Q 017718 304 FIGRPVVYSLAAEGEKGVRRVLEMLREEFELAMALSG 340 (367)
Q Consensus 304 ~ig~~~l~~l~~~G~~~v~~~i~~l~~el~~~m~~~G 340 (367)
|+||++++ +|+. ++..+++||+.+|...|
T Consensus 316 ~v~~~~~~----~gP~----~~~~i~~~L~~~l~~~g 344 (344)
T PRK05286 316 QIYSGLIY----EGPG----LVKEIVRGLARLLRRDG 344 (344)
T ss_pred HHHHHHHH----hCch----HHHHHHHHHHHHHHhcC
Confidence 99999987 3564 77889999999998876
|
|
| >PF01207 Dus: Dihydrouridine synthase (Dus); InterPro: IPR001269 Members of this family catalyse the reduction of the 5,6-double bond of a uridine residue on tRNA | Back alignment and domain information |
|---|
Probab=99.83 E-value=4e-20 Score=178.84 Aligned_cols=237 Identities=25% Similarity=0.341 Sum_probs=151.7
Q ss_pred EeCcccchhccCChhhHHHHHHHHHcCCc-eeecCCCCC-----CHH---HHHhhCC--CceEEEEeecCCHHHHHHHHH
Q 017718 75 MIAPTAMQKMAHPEGEYATARAASAAGTI-MTLSSWSTS-----SVE---EVASTGP--GIRFFQLYVYKDRNVVAQLVR 143 (367)
Q Consensus 75 ~iAPm~~~~l~~~~~e~~~a~aa~~~G~~-~~vs~~~~~-----~~e---~i~~~~~--~~~~~QLy~~~d~~~~~~~l~ 143 (367)
++|||.+.+ |.++++.|.++|.. .++++|-+. ..+ +.....+ .|..+||. ++|++.+.+.++
T Consensus 1 ~LAPM~g~t------d~~fR~l~~~~g~~~~~~temi~a~~~~~~~~~~~~~~~~~~~~~p~~~Ql~-g~~~~~~~~aa~ 73 (309)
T PF01207_consen 1 ILAPMAGVT------DLPFRRLCREFGADDLTYTEMISAKAILRSNKKTIRLLPFLPNERPLIVQLF-GNDPEDLAEAAE 73 (309)
T ss_dssp -E---TTTS------SHHHHHHHHCCTSSSBEE-S-EEHHHHHCT-HHHHHHS-GCC-T-TEEEEEE--S-HHHHHHHHH
T ss_pred CccCCCCCc------hHHHHHHHHHHCCCeEEEcCCEEECcccccccceeecccccccccceeEEEe-eccHHHHHHHHH
Confidence 589998875 88999999999999 888888431 111 1112223 58999998 789999999999
Q ss_pred HHHHcCCcEEEEecCCCCCCchhHHhhhhcCCCCccccccccccccCccccccchhhHHHhhhccCccc--cH-HHHHhh
Q 017718 144 RAERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLTLKNFQGLDLGKMDEANDSGLAAYVAGQIDRSL--SW-KWLQTI 220 (367)
Q Consensus 144 ra~~~G~~ai~itvd~p~~g~r~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~--~~-~~l~~~ 220 (367)
.+.+.|+++|+||++||.+ +++.+ +.++.++. +++. .+ +.+++.
T Consensus 74 ~~~~~~~~~IDlN~GCP~~---------------~v~~~----------------g~Ga~Ll~--~p~~~~~iv~~~~~~ 120 (309)
T PF01207_consen 74 IVAELGFDGIDLNMGCPAP---------------KVTKG----------------GAGAALLK--DPDLLAEIVKAVRKA 120 (309)
T ss_dssp HHCCTT-SEEEEEE---SH---------------HHHHC----------------T-GGGGGC---HHHHHHHHHHHHHH
T ss_pred hhhccCCcEEeccCCCCHH---------------HHhcC----------------CcChhhhc--ChHHhhHHHHhhhcc
Confidence 9989999999999999983 11111 11223443 3333 33 378888
Q ss_pred cCCCEEEEecC--C------HHHHHHHHHcCCcEEEEcCCCCCCCCCccchHHHHHHHHHHhcCCCcEEEecCCCCHHHH
Q 017718 221 TKLPILVKGVL--T------AEDARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDV 292 (367)
Q Consensus 221 ~~~Pv~vK~v~--~------~~~a~~~~~~G~d~i~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~~~via~GGI~~~~dv 292 (367)
+++||.+|... + .+-++.+.++|+++|+|++....|...++..++.+.++++.+ ++|||++|||.|.+|+
T Consensus 121 ~~~pvsvKiR~g~~~~~~~~~~~~~~l~~~G~~~i~vH~Rt~~q~~~~~a~w~~i~~i~~~~--~ipvi~NGdI~s~~d~ 198 (309)
T PF01207_consen 121 VPIPVSVKIRLGWDDSPEETIEFARILEDAGVSAITVHGRTRKQRYKGPADWEAIAEIKEAL--PIPVIANGDIFSPEDA 198 (309)
T ss_dssp -SSEEEEEEESECT--CHHHHHHHHHHHHTT--EEEEECS-TTCCCTS---HHHHHHCHHC---TSEEEEESS--SHHHH
T ss_pred cccceEEecccccccchhHHHHHHHHhhhcccceEEEecCchhhcCCcccchHHHHHHhhcc--cceeEEcCccCCHHHH
Confidence 89999999973 1 345889999999999995443446677899999999999888 6999999999999999
Q ss_pred HHHHHc-CCCEEEech-----HHHHHh---hccCh----HHHHHHHHHHHHHHHHHHHHhC-CCChhhhccccee
Q 017718 293 FKALAL-GASGIFIGR-----PVVYSL---AAEGE----KGVRRVLEMLREEFELAMALSG-CRSLKEITRDHIV 353 (367)
Q Consensus 293 ~kal~l-GAd~V~ig~-----~~l~~l---~~~G~----~~v~~~i~~l~~el~~~m~~~G-~~si~~l~~~~l~ 353 (367)
.+.+.. |+|+||||| ||+|.. ...|. ..+.+.++.+.++++......| ...+..++++..+
T Consensus 199 ~~~~~~tg~dgvMigRgal~nP~lf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~ 273 (309)
T PF01207_consen 199 ERMLEQTGADGVMIGRGALGNPWLFREIDQIKEGEPEPFPPIAERLDIILRHYDYMEEFYGEEKALRQMRKHLKW 273 (309)
T ss_dssp HHHCCCH-SSEEEESHHHCC-CCHHCHHHCHHHHTT--S--HHHHHHHHHHHHHHHHHHHHCCHHHHHHHTTCCC
T ss_pred HHHHHhcCCcEEEEchhhhhcCHHhhhhhhhccCCCCCCCchhHHHHHHHHHHHHHHHHhccCchHHHHHHHHHH
Confidence 999985 999999999 567752 11111 1145667777888887777775 3456666666544
|
Dihydrouridine modification of tRNA is widely observed in prokaryotes and eukaryotes, and also in some archae. Most dihydrouridines are found in the D loop of t-RNAs. The role of dihydrouridine in tRNA is currently unknown, but may increase conformational flexibility of the tRNA. It is likely that different family members have different substrate specificities, which may overlap. Dus 1 (P53759 from SWISSPROT) from Saccharomyces cerevisiae (Baker's yeast) acts on pre-tRNA-Phe, while Dus 2 (P53720 from SWISSPROT) acts on pre-tRNA-Tyr and pre-tRNA-Leu. Dus 1 is active as a single subunit, requiring NADPH or NADH, and is stimulated by the presence of FAD []. Some family members may be targeted to the mitochondria and even have a role in mitochondria []. ; GO: 0017150 tRNA dihydrouridine synthase activity, 0050660 flavin adenine dinucleotide binding, 0008033 tRNA processing, 0055114 oxidation-reduction process; PDB: 1VHN_A 3B0P_A 3B0V_D 3B0U_Y. |
| >PTZ00314 inosine-5'-monophosphate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.82 E-value=2.6e-18 Score=175.58 Aligned_cols=134 Identities=24% Similarity=0.391 Sum_probs=110.9
Q ss_pred HHHhhc-CCCEEEEecCCHHHHHHHHHcCCcEEEEcCCCCC------CCCCccchHHHHHHHHHHhcC-CCcEEEecCCC
Q 017718 216 WLQTIT-KLPILVKGVLTAEDARIAVQAGAAGIIVSNHGAR------QLDYVPATIMALEEVVKATQG-RIPVFLDGGVR 287 (367)
Q Consensus 216 ~l~~~~-~~Pv~vK~v~~~~~a~~~~~~G~d~i~vs~~gg~------~~~~~~~~~~~l~~i~~~~~~-~~~via~GGI~ 287 (367)
++|+.+ ++||+++.+.+.++++.+.++|||+|.++.+.|. ..+.|.|.+..+.++.+.... ++|||++|||+
T Consensus 275 ~ik~~~~~~~v~aG~V~t~~~a~~~~~aGad~I~vg~g~Gs~~~t~~~~~~g~p~~~ai~~~~~~~~~~~v~vIadGGi~ 354 (495)
T PTZ00314 275 KLKSNYPHVDIIAGNVVTADQAKNLIDAGADGLRIGMGSGSICITQEVCAVGRPQASAVYHVARYARERGVPCIADGGIK 354 (495)
T ss_pred HHHhhCCCceEEECCcCCHHHHHHHHHcCCCEEEECCcCCcccccchhccCCCChHHHHHHHHHHHhhcCCeEEecCCCC
Confidence 888886 6899999999999999999999999999654331 235677888888888776542 69999999999
Q ss_pred CHHHHHHHHHcCCCEEEechHHHH--------------------Hhhc-----------------------cCh------
Q 017718 288 RGTDVFKALALGASGIFIGRPVVY--------------------SLAA-----------------------EGE------ 318 (367)
Q Consensus 288 ~~~dv~kal~lGAd~V~ig~~~l~--------------------~l~~-----------------------~G~------ 318 (367)
++.|++||+++||++||+|+.|.- +++. +|.
T Consensus 355 ~~~di~kAla~GA~~Vm~G~~~a~~~e~~~~~~~~~g~~~k~yrGm~s~~a~~~~~~~~~y~~~~~~~~~~egv~~~v~~ 434 (495)
T PTZ00314 355 NSGDICKALALGADCVMLGSLLAGTEEAPGEYFFKDGVRLKVYRGMGSLEAMLSKESGERYLDENETIKVAQGVSGSVVD 434 (495)
T ss_pred CHHHHHHHHHcCCCEEEECchhccccccCCceeeeCCeEEEEEeccchHHHhhcccccccccccccccccCCceEEeeec
Confidence 999999999999999999998732 1110 011
Q ss_pred -HHHHHHHHHHHHHHHHHHHHhCCCChhhhcc
Q 017718 319 -KGVRRVLEMLREEFELAMALSGCRSLKEITR 349 (367)
Q Consensus 319 -~~v~~~i~~l~~el~~~m~~~G~~si~~l~~ 349 (367)
..+.+++..+..+|+..|.++|+.+|.||+.
T Consensus 435 ~g~~~~~~~~~~~gl~~~~~y~g~~~i~~~~~ 466 (495)
T PTZ00314 435 KGSVAKLIPYLVKGVKHGMQYIGAHSIPELHE 466 (495)
T ss_pred CCcHHHHHHHHHHHHHHHHHhhCCCcHHHHHh
Confidence 1288999999999999999999999999986
|
|
| >PRK07107 inosine 5-monophosphate dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=99.82 E-value=1e-18 Score=178.47 Aligned_cols=152 Identities=26% Similarity=0.308 Sum_probs=118.9
Q ss_pred HHHHhhcCCCEEEEe--cCCHHHHHHHHHcCCcEEEEcCCCC-----C-CCCCccchHHHHHHHHHHh-------cCCCc
Q 017718 215 KWLQTITKLPILVKG--VLTAEDARIAVQAGAAGIIVSNHGA-----R-QLDYVPATIMALEEVVKAT-------QGRIP 279 (367)
Q Consensus 215 ~~l~~~~~~Pv~vK~--v~~~~~a~~~~~~G~d~i~vs~~gg-----~-~~~~~~~~~~~l~~i~~~~-------~~~~~ 279 (367)
+++|+.++.++.|+. +.+.++|+.+.++|||+|.|++||| + +.+.+++.+.++.++++++ +.++|
T Consensus 275 ~~ir~~~~~~~~V~aGnV~t~e~a~~li~aGAd~I~vg~g~Gs~c~tr~~~~~g~~~~~ai~~~~~a~~~~~~~~g~~~~ 354 (502)
T PRK07107 275 DWIREKYGDSVKVGAGNVVDREGFRYLAEAGADFVKVGIGGGSICITREQKGIGRGQATALIEVAKARDEYFEETGVYIP 354 (502)
T ss_pred HHHHHhCCCCceEEeccccCHHHHHHHHHcCCCEEEECCCCCcCcccccccCCCccHHHHHHHHHHHHHHHHhhcCCcce
Confidence 488888864444444 8999999999999999999999999 4 5677899999999998865 22499
Q ss_pred EEEecCCCCHHHHHHHHHcCCCEEEechHHH--------------------HHhhc--------------------cChH
Q 017718 280 VFLDGGVRRGTDVFKALALGASGIFIGRPVV--------------------YSLAA--------------------EGEK 319 (367)
Q Consensus 280 via~GGI~~~~dv~kal~lGAd~V~ig~~~l--------------------~~l~~--------------------~G~~ 319 (367)
||+||||+++.|++|||++|||+||+|++|- ++++. +|.+
T Consensus 355 viadgGir~~gdi~KAla~GA~~vm~G~~~ag~~espg~~~~~~g~~~k~yrgm~s~~a~~~~ry~~~~~~~~~~~egv~ 434 (502)
T PRK07107 355 ICSDGGIVYDYHMTLALAMGADFIMLGRYFARFDESPTNKVNINGNYMKEYWGEGSNRARNWQRYDLGGDKKLSFEEGVD 434 (502)
T ss_pred EEEcCCCCchhHHHHHHHcCCCeeeeChhhhccccCCCcEEEECCEEEEEeecccCHhhhhccccccccccccccCCccE
Confidence 9999999999999999999999999999882 11111 1111
Q ss_pred -------HHHHHHHHHHHHHHHHHHHhCCCChhhhccc-ceeeccCCCCCCCCCC
Q 017718 320 -------GVRRVLEMLREEFELAMALSGCRSLKEITRD-HIVTEWDASLPRPVPR 366 (367)
Q Consensus 320 -------~v~~~i~~l~~el~~~m~~~G~~si~~l~~~-~l~~~~~~~~~~~~~~ 366 (367)
.+.+++..+...|+..|.++|..+|.||+.. .+......+....-||
T Consensus 435 ~~v~~~g~~~~~~~~~~~glrs~~~y~g~~~i~~l~~~~~f~~~t~~~~~e~~~h 489 (502)
T PRK07107 435 SYVPYAGSLKDNVAITLSKVRSTMCNCGALSIPELQQKAKITLVSSTSIVEGGAH 489 (502)
T ss_pred EEecCCCCHHHHHHHHHHHHHHhhhccCCCcHHHHHhCCeEEEECcchhhccCCC
Confidence 2888999999999999999999999999855 3333334444444443
|
|
| >PRK11815 tRNA-dihydrouridine synthase A; Provisional | Back alignment and domain information |
|---|
Probab=99.82 E-value=1.7e-18 Score=169.09 Aligned_cols=240 Identities=20% Similarity=0.213 Sum_probs=164.3
Q ss_pred eeeccceEeCcccchhccCChhhHHHHHHHHHcCC-ceeecCCCCC------CHHHHHhhCC--CceEEEEeecCCHHHH
Q 017718 68 FKISMPIMIAPTAMQKMAHPEGEYATARAASAAGT-IMTLSSWSTS------SVEEVASTGP--GIRFFQLYVYKDRNVV 138 (367)
Q Consensus 68 ~~l~~Pi~iAPm~~~~l~~~~~e~~~a~aa~~~G~-~~~vs~~~~~------~~e~i~~~~~--~~~~~QLy~~~d~~~~ 138 (367)
...+.|+++|||.+.+ |.++++.|+++|. .+++++|-+. ...+.....+ .|..+||+ +.|++..
T Consensus 7 ~~~~~~~~lAPM~g~t------d~~fR~~~~~~g~~~~~~temv~~~~l~~~~~~~~l~~~~~e~p~~vQl~-g~~p~~~ 79 (333)
T PRK11815 7 KLPSRRFSVAPMMDWT------DRHCRYFHRLLSRHALLYTEMVTTGAIIHGDRERLLAFDPEEHPVALQLG-GSDPADL 79 (333)
T ss_pred cCCCCCEEEeCCCCCc------CHHHHHHHHHhCCCCEEEECCEEeccccccCHHHHhccCCCCCcEEEEEe-CCCHHHH
Confidence 3456799999998876 7899999999997 6888888321 1122222222 68999998 7899999
Q ss_pred HHHHHHHHHcCCcEEEEecCCCCCCchhHHhhhhcCCCCccccccccccccCccccccchhhHHHhhhccCccc--cH-H
Q 017718 139 AQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLTLKNFQGLDLGKMDEANDSGLAAYVAGQIDRSL--SW-K 215 (367)
Q Consensus 139 ~~~l~ra~~~G~~ai~itvd~p~~g~r~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~--~~-~ 215 (367)
.+.+++++++|+++|.||++||..-.|. .+ .++ .+.. ++.+ .+ +
T Consensus 80 ~~aA~~~~~~g~d~IdlN~gCP~~~v~~----~~-----------------------~Gs----~L~~--~p~~~~eiv~ 126 (333)
T PRK11815 80 AEAAKLAEDWGYDEINLNVGCPSDRVQN----GR-----------------------FGA----CLMA--EPELVADCVK 126 (333)
T ss_pred HHHHHHHHhcCCCEEEEcCCCCHHHccC----CC-----------------------eee----HHhc--CHHHHHHHHH
Confidence 9999999999999999999999741110 00 011 1122 3443 33 3
Q ss_pred HHHhhcCCCEEEEecCC----------HHHHHHHHHcCCcEEEEcCCCC-CCCC-------CccchHHHHHHHHHHhcCC
Q 017718 216 WLQTITKLPILVKGVLT----------AEDARIAVQAGAAGIIVSNHGA-RQLD-------YVPATIMALEEVVKATQGR 277 (367)
Q Consensus 216 ~l~~~~~~Pv~vK~v~~----------~~~a~~~~~~G~d~i~vs~~gg-~~~~-------~~~~~~~~l~~i~~~~~~~ 277 (367)
.+++.+++||.+|.... .+-++.+.++|+|+|++++..+ .+.. ..+..++.+.++++.+. +
T Consensus 127 avr~~v~~pVsvKiR~g~~~~~t~~~~~~~~~~l~~aG~d~i~vh~Rt~~~~g~~~~~~~~~~~~~~~~i~~v~~~~~-~ 205 (333)
T PRK11815 127 AMKDAVSIPVTVKHRIGIDDQDSYEFLCDFVDTVAEAGCDTFIVHARKAWLKGLSPKENREIPPLDYDRVYRLKRDFP-H 205 (333)
T ss_pred HHHHHcCCceEEEEEeeeCCCcCHHHHHHHHHHHHHhCCCEEEEcCCchhhcCCCccccccCCCcCHHHHHHHHHhCC-C
Confidence 78888899999998521 2336788999999999953211 1111 12346788888877642 6
Q ss_pred CcEEEecCCCCHHHHHHHHHcCCCEEEechHHH-----HHhhc---cCh----HHHHHHHHHHHHHHHHHHHHhCCCChh
Q 017718 278 IPVFLDGGVRRGTDVFKALALGASGIFIGRPVV-----YSLAA---EGE----KGVRRVLEMLREEFELAMALSGCRSLK 345 (367)
Q Consensus 278 ~~via~GGI~~~~dv~kal~lGAd~V~ig~~~l-----~~l~~---~G~----~~v~~~i~~l~~el~~~m~~~G~~si~ 345 (367)
+|||++|||++.+|+.+++. |||+|||||+++ +.... .|. ....++++.+.++++..... |. .+.
T Consensus 206 iPVI~nGgI~s~eda~~~l~-~aDgVmIGRa~l~nP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~-~~~ 282 (333)
T PRK11815 206 LTIEINGGIKTLEEAKEHLQ-HVDGVMIGRAAYHNPYLLAEVDRELFGEPAPPLSRSEVLEAMLPYIERHLAQ-GG-RLN 282 (333)
T ss_pred CeEEEECCcCCHHHHHHHHh-cCCEEEEcHHHHhCCHHHHHHHHHhcCCCCCCCCHHHHHHHHHHHHHHHHHc-Cc-hHH
Confidence 99999999999999999997 899999999654 33211 122 12445666677777666553 43 355
Q ss_pred hhcccc
Q 017718 346 EITRDH 351 (367)
Q Consensus 346 ~l~~~~ 351 (367)
.++++.
T Consensus 283 ~~rk~~ 288 (333)
T PRK11815 283 HITRHM 288 (333)
T ss_pred HHHHHH
Confidence 665543
|
|
| >PLN02274 inosine-5'-monophosphate dehydrogenase | Back alignment and domain information |
|---|
Probab=99.81 E-value=6.7e-18 Score=172.69 Aligned_cols=136 Identities=21% Similarity=0.326 Sum_probs=110.0
Q ss_pred cHH---HHHhhc-CCCEEEEecCCHHHHHHHHHcCCcEEEEcCCCCC----CCCC--c---cchHHHHHHHHHHhcCCCc
Q 017718 213 SWK---WLQTIT-KLPILVKGVLTAEDARIAVQAGAAGIIVSNHGAR----QLDY--V---PATIMALEEVVKATQGRIP 279 (367)
Q Consensus 213 ~~~---~l~~~~-~~Pv~vK~v~~~~~a~~~~~~G~d~i~vs~~gg~----~~~~--~---~~~~~~l~~i~~~~~~~~~ 279 (367)
.|+ ++|+.+ +.+|+++.+.+.++|+.+.++|||+|.+++|+|+ +... + .+++..++++.+.. ++|
T Consensus 276 ~~~~i~~ik~~~p~~~vi~g~v~t~e~a~~a~~aGaD~i~vg~g~G~~~~t~~~~~~g~~~~~~i~~~~~~~~~~--~vp 353 (505)
T PLN02274 276 QLEMIKYIKKTYPELDVIGGNVVTMYQAQNLIQAGVDGLRVGMGSGSICTTQEVCAVGRGQATAVYKVASIAAQH--GVP 353 (505)
T ss_pred HHHHHHHHHHhCCCCcEEEecCCCHHHHHHHHHcCcCEEEECCCCCccccCccccccCCCcccHHHHHHHHHHhc--CCe
Confidence 465 899888 4899999999999999999999999999988763 2221 2 23555677776654 799
Q ss_pred EEEecCCCCHHHHHHHHHcCCCEEEechHHHH--------------------Hhhc----------------------cC
Q 017718 280 VFLDGGVRRGTDVFKALALGASGIFIGRPVVY--------------------SLAA----------------------EG 317 (367)
Q Consensus 280 via~GGI~~~~dv~kal~lGAd~V~ig~~~l~--------------------~l~~----------------------~G 317 (367)
||++|||+++.|++|||++||++||+|+.|.- +++. +|
T Consensus 354 VIadGGI~~~~di~kAla~GA~~V~vGs~~~~t~Esp~~~~~~~g~~~k~yrgmgs~~a~~~~~~~ry~~~~~~~~v~eg 433 (505)
T PLN02274 354 VIADGGISNSGHIVKALTLGASTVMMGSFLAGTTEAPGEYFYQDGVRVKKYRGMGSLEAMTKGSDQRYLGDTAKLKIAQG 433 (505)
T ss_pred EEEeCCCCCHHHHHHHHHcCCCEEEEchhhcccccCCcceeeeCCeEEEEEeccchHHHHhccccccccccCcccccCCc
Confidence 99999999999999999999999999998832 1110 11
Q ss_pred hH-------HHHHHHHHHHHHHHHHHHHhCCCChhhhccc
Q 017718 318 EK-------GVRRVLEMLREEFELAMALSGCRSLKEITRD 350 (367)
Q Consensus 318 ~~-------~v~~~i~~l~~el~~~m~~~G~~si~~l~~~ 350 (367)
.+ .+.+++..|...|+..|.++|+.+|.||+..
T Consensus 434 v~~~v~~~g~~~~~~~~~~~g~~~~~~y~g~~~~~~~~~~ 473 (505)
T PLN02274 434 VSGAVADKGSVLKFVPYTMQAVKQGFQDLGASSLQSAHEL 473 (505)
T ss_pred eEEecccCCCHHHHHHHHHHHHHHhhhhcCcchHHHHHhh
Confidence 11 2889999999999999999999999999866
|
|
| >PF01645 Glu_synthase: Conserved region in glutamate synthase; InterPro: IPR002932 Ferredoxin-dependent glutamate synthases have been implicated in a number of functions including photorespiration in Arabidopsis where they may also play a role in primary nitrogen assimilation in roots [] | Back alignment and domain information |
|---|
Probab=99.80 E-value=6.4e-18 Score=165.31 Aligned_cols=251 Identities=25% Similarity=0.284 Sum_probs=145.1
Q ss_pred eeeccceEeCcccchhccCChhhHHHHHHHHHcCCceeecCCCCCCHHHHHhhCCCceEEEEeecCCHHHHHHHHHHHHH
Q 017718 68 FKISMPIMIAPTAMQKMAHPEGEYATARAASAAGTIMTLSSWSTSSVEEVASTGPGIRFFQLYVYKDRNVVAQLVRRAER 147 (367)
Q Consensus 68 ~~l~~Pi~iAPm~~~~l~~~~~e~~~a~aa~~~G~~~~vs~~~~~~~e~i~~~~~~~~~~QLy~~~d~~~~~~~l~ra~~ 147 (367)
.+++.||+++.|+++.+. ++.-.++++++.+.|+.+..++.. .+.++.... .....+|+- ........+.++
T Consensus 62 ~~l~~p~~is~MS~GaLS-~~a~~Ala~ga~~~G~~~ntGEGg-~~~~~~~~~-~~~~I~Q~~-sg~fGv~~~~l~---- 133 (368)
T PF01645_consen 62 LELSIPFMISAMSYGALS-EEAKEALAKGANMAGTASNTGEGG-ELPEERKAA-KDLRIKQIA-SGRFGVRPEYLK---- 133 (368)
T ss_dssp HHHHTTEEEEEB-CTTC--HHHHHHHHHHHHHCT-EEEETTT----GGGCSB--TTSSEEEE--TT-TT--HHHHC----
T ss_pred hhheeeeecccCChhhcC-HHHHHHHHHHHHHhCceEecCCCC-CCHHHhccc-CCceEEEcC-CCCCCCCHHHhc----
Confidence 457899999999998664 467789999999999888777653 444443322 122378974 344444444443
Q ss_pred cCCcEEEEecCCCCCCchhHHhhhhcCCCC-ccccccccccccCcccccc-chhhHHHhhhccCccc----cH----HHH
Q 017718 148 AGFKAIALTVDTPRLGRREADIKNRFTLPP-FLTLKNFQGLDLGKMDEAN-DSGLAAYVAGQIDRSL----SW----KWL 217 (367)
Q Consensus 148 ~G~~ai~itvd~p~~g~r~~~~~~~~~~p~-~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~d~~~----~~----~~l 217 (367)
.+++|-|-+.--.. -..|..+|. +++.. ++... .......+.+...+++ +| ++|
T Consensus 134 -~a~~iEIKigQGAK------pG~GG~Lp~~KV~~~---------ia~~R~~~~g~~~iSP~~h~di~s~edl~~~I~~L 197 (368)
T PF01645_consen 134 -QADMIEIKIGQGAK------PGEGGHLPGEKVTEE---------IARIRGVPPGVDLISPPPHHDIYSIEDLAQLIEEL 197 (368)
T ss_dssp -C-SEEEEE---TTS------TTT--EE-GGG--HH---------HHHHHTS-TT--EE--SS-TT-SSHHHHHHHHHHH
T ss_pred -CCCeEEEEEecCcc------ccCcceechhhchHH---------HHHHhCCCCCCccccCCCCCCcCCHHHHHHHHHHH
Confidence 45666665542210 001111221 11100 00000 0000111112222222 22 278
Q ss_pred Hhhc-CCCEEEEecCC--HHH-HHHHHHcCCcEEEEcCC-CCCC-------CCCccchHHHHHHHHHHh-----cCCCcE
Q 017718 218 QTIT-KLPILVKGVLT--AED-ARIAVQAGAAGIIVSNH-GARQ-------LDYVPATIMALEEVVKAT-----QGRIPV 280 (367)
Q Consensus 218 ~~~~-~~Pv~vK~v~~--~~~-a~~~~~~G~d~i~vs~~-gg~~-------~~~~~~~~~~l~~i~~~~-----~~~~~v 280 (367)
|+.+ ++||.+|.+.. .++ +..+.++|+|.|+++++ ||+. -+.|.|....|.++.+.+ ++++.+
T Consensus 198 r~~~~~~pVgvKl~~~~~~~~~~~~~~~ag~D~ItIDG~~GGTGAap~~~~d~~GlP~~~~l~~a~~~L~~~glr~~V~L 277 (368)
T PF01645_consen 198 RELNPGKPVGVKLVAGRGVEDIAAGAAKAGADFITIDGAEGGTGAAPLTSMDHVGLPTEYALARAHQALVKNGLRDRVSL 277 (368)
T ss_dssp HHH-TTSEEEEEEE-STTHHHHHHHHHHTT-SEEEEE-TT---SSEECCHHHHC---HHHHHHHHHHHHHCTT-CCCSEE
T ss_pred HhhCCCCcEEEEECCCCcHHHHHHhhhhccCCEEEEeCCCCCCCCCchhHHhhCCCcHHHHHHHHHHHHHHcCCCCceEE
Confidence 8888 89999999843 344 34489999999999987 4442 146788888888888765 457999
Q ss_pred EEecCCCCHHHHHHHHHcCCCEEEechHHHHHhhcc-----------------------------ChHHHHHHHHHHHHH
Q 017718 281 FLDGGVRRGTDVFKALALGASGIFIGRPVVYSLAAE-----------------------------GEKGVRRVLEMLREE 331 (367)
Q Consensus 281 ia~GGI~~~~dv~kal~lGAd~V~ig~~~l~~l~~~-----------------------------G~~~v~~~i~~l~~e 331 (367)
+++||++++.|++|+++||||+|.+||++|+++.|. +.+.|.+++..+.+|
T Consensus 278 i~sGgl~t~~dv~kalaLGAD~v~igt~~liAlGC~~~~~C~~~~CP~Giatq~~~l~~~l~~~~~~~~v~n~~~~~~~e 357 (368)
T PF01645_consen 278 IASGGLRTGDDVAKALALGADAVYIGTAALIALGCIQCRKCHTGTCPVGIATQDPKLRKRLDVEEKAERVANFLKACAEE 357 (368)
T ss_dssp EEESS--SHHHHHHHHHCT-SEEE-SHHHHHHCT--S---CCCT--TTSSS---CCHH--CT----HHHHHHHHHHHHHH
T ss_pred EEeCCccCHHHHHHHHhcCCCeeEecchhhhhcchHHHhcccCCCCCceeeecCcccccccccccHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999998752 346799999999999
Q ss_pred HHHHHHHhCCC
Q 017718 332 FELAMALSGCR 342 (367)
Q Consensus 332 l~~~m~~~G~~ 342 (367)
++..|..+|.+
T Consensus 358 l~~~~~a~G~~ 368 (368)
T PF01645_consen 358 LREILAALGKR 368 (368)
T ss_dssp HHHHHHHHT-S
T ss_pred HHHHHHHhCCC
Confidence 99999999964
|
This region is expressed as a seperate subunit in the glutamate synthase alpha subunit from archaebacteria, or part of a large multidomain enzyme in other organisms. The aligned region of these proteins contains a putative FMN binding site and Fe-S cluster.; GO: 0015930 glutamate synthase activity, 0016638 oxidoreductase activity, acting on the CH-NH2 group of donors, 0006537 glutamate biosynthetic process, 0055114 oxidation-reduction process; PDB: 1EA0_A 2VDC_E 1OFE_A 1LLW_A 1OFD_A 1LLZ_A 1LM1_A. |
| >cd04741 DHOD_1A_like Dihydroorotate dehydrogenase (DHOD) class 1A FMN-binding domain | Back alignment and domain information |
|---|
Probab=99.79 E-value=1.5e-17 Score=159.88 Aligned_cols=220 Identities=19% Similarity=0.138 Sum_probs=148.9
Q ss_pred eeEcCeeeccceEeCcccchhccCChhhHHHHHHHHHcCCceee-cCCCC--------------------------CCH-
Q 017718 63 TTVLGFKISMPIMIAPTAMQKMAHPEGEYATARAASAAGTIMTL-SSWST--------------------------SSV- 114 (367)
Q Consensus 63 t~i~g~~l~~Pi~iAPm~~~~l~~~~~e~~~a~aa~~~G~~~~v-s~~~~--------------------------~~~- 114 (367)
++++|.++++||++|+-... .+....+.+.+.|..+++ .|... ..+
T Consensus 1 ~~~~Gl~l~nPi~~Asg~~~------~~~e~~~~~~~~G~Gavv~ktit~~~~~gn~~pr~~~~~~~~~N~~G~~n~g~~ 74 (294)
T cd04741 1 VTPPGLTISPPLMNAAGPWC------TTLEDLLELAASSTGAVTTRSSTLAGRPGNPEPRYYAFPLGSINSLGLPNLGLD 74 (294)
T ss_pred CccCCeeCCCCCEECCCCCC------CCHHHHHHHHHcCCcEEEeCcccCCCCCCCCCCcEEecCccccccccCCCcCHH
Confidence 47899999999999984322 355666666678888775 22211 012
Q ss_pred ---HHHHhh------CCCceEEEEeecCCHHHHHHHHHHHHHc---CCcEEEEecCCCCCCchhHHhhhhcCCCCccccc
Q 017718 115 ---EEVAST------GPGIRFFQLYVYKDRNVVAQLVRRAERA---GFKAIALTVDTPRLGRREADIKNRFTLPPFLTLK 182 (367)
Q Consensus 115 ---e~i~~~------~~~~~~~QLy~~~d~~~~~~~l~ra~~~---G~~ai~itvd~p~~g~r~~~~~~~~~~p~~~~~~ 182 (367)
+++.+. ...|...|+. .. .+...+.++++++. |++++.+|+.||......
T Consensus 75 ~~~~~i~~~~~~~~~~~~pvivsi~-g~-~~~~~~~~~~~~~~~~~~ad~ielN~sCPn~~~~~---------------- 136 (294)
T cd04741 75 YYLEYIRTISDGLPGSAKPFFISVT-GS-AEDIAAMYKKIAAHQKQFPLAMELNLSCPNVPGKP---------------- 136 (294)
T ss_pred HHHHHHHHHhhhccccCCeEEEECC-CC-HHHHHHHHHHHHhhccccccEEEEECCCCCCCCcc----------------
Confidence 223221 1257888987 34 77777778888775 799999999999731100
Q ss_pred cccccccCccccccchhhHHHhhhccCccc--cH-HHHHhhcCCCEEEEecCCH------HHHHHHHHc--CCcEEEEcC
Q 017718 183 NFQGLDLGKMDEANDSGLAAYVAGQIDRSL--SW-KWLQTITKLPILVKGVLTA------EDARIAVQA--GAAGIIVSN 251 (367)
Q Consensus 183 ~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~--~~-~~l~~~~~~Pv~vK~v~~~------~~a~~~~~~--G~d~i~vs~ 251 (367)
. +. .+++. +. +++++.+++||++|+.... +.|+.+.++ |+|+|++.|
T Consensus 137 ~--------------------~~--~~~~~~~~i~~~v~~~~~iPv~vKl~p~~~~~~~~~~a~~l~~~~~G~~gi~~~N 194 (294)
T cd04741 137 P--------------------PA--YDFDATLEYLTAVKAAYSIPVGVKTPPYTDPAQFDTLAEALNAFACPISFITATN 194 (294)
T ss_pred c--------------------cc--CCHHHHHHHHHHHHHhcCCCEEEEeCCCCCHHHHHHHHHHHhccccCCcEEEEEc
Confidence 0 00 01221 22 3788888999999998432 235556677 999999876
Q ss_pred CCC---------CC-------CCCccc-------hHHHHHHHHHHhcCCCcEEEecCCCCHHHHHHHHHcCCCEEEechH
Q 017718 252 HGA---------RQ-------LDYVPA-------TIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFIGRP 308 (367)
Q Consensus 252 ~gg---------~~-------~~~~~~-------~~~~l~~i~~~~~~~~~via~GGI~~~~dv~kal~lGAd~V~ig~~ 308 (367)
+-+ +. ..+|.+ .+..+.++++.++.++|||++|||.+++|++++|.+|||+||+||.
T Consensus 195 t~~~~~~id~~~~~~~~~~~~~~gG~SG~~i~~~al~~v~~~~~~~~~~ipIig~GGI~s~~da~e~l~aGA~~Vqv~ta 274 (294)
T cd04741 195 TLGNGLVLDPERETVVLKPKTGFGGLAGAYLHPLALGNVRTFRRLLPSEIQIIGVGGVLDGRGAFRMRLAGASAVQVGTA 274 (294)
T ss_pred cCCccccccCCCCCcccCCCCCCCCcCchhhHHHHHHHHHHHHHhcCCCCCEEEeCCCCCHHHHHHHHHcCCCceeEchh
Confidence 421 11 112332 3455677777775569999999999999999999999999999999
Q ss_pred HHHHhhccChHHHHHHHHHHHHHHHHHH
Q 017718 309 VVYSLAAEGEKGVRRVLEMLREEFELAM 336 (367)
Q Consensus 309 ~l~~l~~~G~~~v~~~i~~l~~el~~~m 336 (367)
+++ +|+. +++.+.+||+.+|
T Consensus 275 ~~~----~gp~----~~~~i~~~L~~~~ 294 (294)
T cd04741 275 LGK----EGPK----VFARIEKELEDIW 294 (294)
T ss_pred hhh----cCch----HHHHHHHHHHhhC
Confidence 986 3664 6677888887764
|
DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences and cellular location. Members of class 1 are cytosolic enzymes and multimers while class 2 enzymes are membrane associated and monomeric. The class 1 enzymes can be further divided into subtypes 1A and 1B which are homodimers and heterotetrameric proteins, respectively. |
| >PRK05567 inosine 5'-monophosphate dehydrogenase; Reviewed | Back alignment and domain information |
|---|
Probab=99.79 E-value=1.7e-17 Score=169.81 Aligned_cols=136 Identities=27% Similarity=0.418 Sum_probs=112.6
Q ss_pred HHHHhhc-CCCEEEEecCCHHHHHHHHHcCCcEEEEcC-----CCCCCC-CCccchHHHHHHHHHHhc-CCCcEEEecCC
Q 017718 215 KWLQTIT-KLPILVKGVLTAEDARIAVQAGAAGIIVSN-----HGARQL-DYVPATIMALEEVVKATQ-GRIPVFLDGGV 286 (367)
Q Consensus 215 ~~l~~~~-~~Pv~vK~v~~~~~a~~~~~~G~d~i~vs~-----~gg~~~-~~~~~~~~~l~~i~~~~~-~~~~via~GGI 286 (367)
+++++.+ ++||+++.+.+.++|+.+.++|+|+|.++. |+++.+ .++.++++++.++++..+ .++|||++|||
T Consensus 261 ~~i~~~~p~~~vi~g~v~t~e~a~~l~~aGad~i~vg~g~gs~~~~r~~~~~g~p~~~~~~~~~~~~~~~~~~viadGGi 340 (486)
T PRK05567 261 REIKAKYPDVQIIAGNVATAEAARALIEAGADAVKVGIGPGSICTTRIVAGVGVPQITAIADAAEAAKKYGIPVIADGGI 340 (486)
T ss_pred HHHHhhCCCCCEEEeccCCHHHHHHHHHcCCCEEEECCCCCccccceeecCCCcCHHHHHHHHHHHhccCCCeEEEcCCC
Confidence 3888887 899999999999999999999999999843 333443 457899999999987663 36999999999
Q ss_pred CCHHHHHHHHHcCCCEEEechHHHH--------------------Hhhc------------------------cCh----
Q 017718 287 RRGTDVFKALALGASGIFIGRPVVY--------------------SLAA------------------------EGE---- 318 (367)
Q Consensus 287 ~~~~dv~kal~lGAd~V~ig~~~l~--------------------~l~~------------------------~G~---- 318 (367)
+++.|++|||++|||+||+|++|-- +++. +|.
T Consensus 341 ~~~~di~kAla~GA~~v~~G~~~a~~~e~pg~~~~~~g~~~k~y~gm~s~~a~~~~~~~r~~~~~~~~~~~~~~g~~~~~ 420 (486)
T PRK05567 341 RYSGDIAKALAAGASAVMLGSMLAGTEEAPGEVELYQGRSYKSYRGMGSLGAMSKGSSDRYFQSVNAADKLVPEGIEGRV 420 (486)
T ss_pred CCHHHHHHHHHhCCCEEEECccccccccCCCceEEECCEEEEEEeccchHHHHhcccccccccccccccccCCCceEEeC
Confidence 9999999999999999999997721 1110 111
Q ss_pred ---HHHHHHHHHHHHHHHHHHHHhCCCChhhhccc
Q 017718 319 ---KGVRRVLEMLREEFELAMALSGCRSLKEITRD 350 (367)
Q Consensus 319 ---~~v~~~i~~l~~el~~~m~~~G~~si~~l~~~ 350 (367)
..+.+++..+...|+..|.++|..+|.||+..
T Consensus 421 ~~~g~~~~~~~~~~~g~~~~~~~~g~~~~~~~~~~ 455 (486)
T PRK05567 421 PYKGPLSEIIHQLMGGLRSGMGYTGAATIEELREK 455 (486)
T ss_pred CCCCCHHHHHHHHHHHHHHHHHhcCcCcHHHHHhc
Confidence 12889999999999999999999999999843
|
|
| >TIGR01302 IMP_dehydrog inosine-5'-monophosphate dehydrogenase | Back alignment and domain information |
|---|
Probab=99.79 E-value=9.1e-18 Score=170.22 Aligned_cols=133 Identities=30% Similarity=0.437 Sum_probs=110.4
Q ss_pred HHHhhc-CCCEEEEecCCHHHHHHHHHcCCcEEEEcCCCCC---C---CCCccchHHHHHHHHHHhc-CCCcEEEecCCC
Q 017718 216 WLQTIT-KLPILVKGVLTAEDARIAVQAGAAGIIVSNHGAR---Q---LDYVPATIMALEEVVKATQ-GRIPVFLDGGVR 287 (367)
Q Consensus 216 ~l~~~~-~~Pv~vK~v~~~~~a~~~~~~G~d~i~vs~~gg~---~---~~~~~~~~~~l~~i~~~~~-~~~~via~GGI~ 287 (367)
++|+.+ ++||+++.+.+.++|+.+.++|+|+|.|+.+.|. + ..++.+.+..+.++.+... .++|||++|||+
T Consensus 258 ~i~~~~~~~~vi~G~v~t~~~a~~l~~aGad~i~vg~g~G~~~~t~~~~~~g~p~~~~i~~~~~~~~~~~vpviadGGi~ 337 (450)
T TIGR01302 258 EIKKTYPDLDIIAGNVATAEQAKALIDAGADGLRVGIGPGSICTTRIVAGVGVPQITAVYDVAEYAAQSGIPVIADGGIR 337 (450)
T ss_pred HHHHhCCCCCEEEEeCCCHHHHHHHHHhCCCEEEECCCCCcCCccceecCCCccHHHHHHHHHHHHhhcCCeEEEeCCCC
Confidence 788875 7999999999999999999999999999866552 1 2467888899988877653 379999999999
Q ss_pred CHHHHHHHHHcCCCEEEechHHH--------------------HHhhc------------------------cChH----
Q 017718 288 RGTDVFKALALGASGIFIGRPVV--------------------YSLAA------------------------EGEK---- 319 (367)
Q Consensus 288 ~~~dv~kal~lGAd~V~ig~~~l--------------------~~l~~------------------------~G~~---- 319 (367)
++.|++|||++||++||+|+.|. ++++. +|.+
T Consensus 338 ~~~di~kAla~GA~~V~~G~~~a~~~e~pg~~~~~~g~~~k~yrgm~s~~a~~~~~~~ry~~~~~~~~~~~~egv~~~~~ 417 (450)
T TIGR01302 338 YSGDIVKALAAGADAVMLGSLLAGTTESPGEYEIINGRRYKQYRGMGSLGAMTKGSSDRYLQDENKTKKFVPEGVEGAVP 417 (450)
T ss_pred CHHHHHHHHHcCCCEEEECchhhcCCcCCCceEEECCEEEEEEeccchHHHHhccccccccccccccccccCCceEEccc
Confidence 99999999999999999999872 11110 1111
Q ss_pred ---HHHHHHHHHHHHHHHHHHHhCCCChhhhc
Q 017718 320 ---GVRRVLEMLREEFELAMALSGCRSLKEIT 348 (367)
Q Consensus 320 ---~v~~~i~~l~~el~~~m~~~G~~si~~l~ 348 (367)
.+.+++..+...|+..|.++|+.++.||+
T Consensus 418 ~~g~~~~~~~~~~~g~~~~~~~~g~~~~~~~~ 449 (450)
T TIGR01302 418 YKGSVLELLPQLVGGLKSGMGYVGARSIDELR 449 (450)
T ss_pred ccCcHHHHHHHHHHHHHHhhhccCcCcHHHHh
Confidence 38889999999999999999999999986
|
This model describes a rather tightly conserved cluster of IMP dehydrogenase sequences, many of which are characterized. The model excludes two related families of proteins proposed also to be IMP dehydrogenases, but without characterized members. These are related families are the subject of separate models. |
| >cd04738 DHOD_2_like Dihydroorotate dehydrogenase (DHOD) class 2 | Back alignment and domain information |
|---|
Probab=99.79 E-value=1.7e-17 Score=161.85 Aligned_cols=245 Identities=20% Similarity=0.232 Sum_probs=157.0
Q ss_pred chhhHHHhHhccccceeecccc-CCCCCCccceeEcCeeeccceEeCcccchhccCChhhHHHHHHHHHcCCceee-cCC
Q 017718 32 DQWTLQENRNAFSRILFRPRIL-IDVSKIDMNTTVLGFKISMPIMIAPTAMQKMAHPEGEYATARAASAAGTIMTL-SSW 109 (367)
Q Consensus 32 ~~~t~~~n~~~~~~i~l~pr~l-~~~~~vd~st~i~g~~l~~Pi~iAPm~~~~l~~~~~e~~~a~aa~~~G~~~~v-s~~ 109 (367)
-|.+++-....+..+...|-.+ ....+.|++|+++|.++++||++|. |.. .+....+.+.+.|..+++ .|.
T Consensus 9 ~~~~h~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~~Gl~l~nPi~~As-G~~------~~~~~~~~~~~~G~Gavv~kti 81 (327)
T cd04738 9 PETAHRLAIRALKLGLGPPLLLLLVYDDPRLEVEVFGLTFPNPVGLAA-GFD------KNAEAIDALLALGFGFVEVGTV 81 (327)
T ss_pred HHHHHHHHHHHHHhcCCCCCccccCCCCCCcceEECCEECCCCCEeCc-CCC------CCHHHHHHHHHCCCcEEEEecc
Confidence 3455555555666655555221 4567889999999999999998877 221 234455555578887665 232
Q ss_pred CCC----------------------------C----HHHHHhhC--CCceEEEEeecCC------HHHHHHHHHHHHHcC
Q 017718 110 STS----------------------------S----VEEVASTG--PGIRFFQLYVYKD------RNVVAQLVRRAERAG 149 (367)
Q Consensus 110 ~~~----------------------------~----~e~i~~~~--~~~~~~QLy~~~d------~~~~~~~l~ra~~~G 149 (367)
... . ++++.+.. ..|.++|+..... .+...++++++.. +
T Consensus 82 t~~~~~gn~~pr~~~~~~~~~~~n~~g~~n~g~~~~~~~l~~~~~~~~plivsi~g~~~~~~~~~~~d~~~~~~~~~~-~ 160 (327)
T cd04738 82 TPRPQPGNPKPRLFRLPEDEALINRMGFNNDGADAVAKRLKKRRPRGGPLGVNIGKNKDTPLEDAVEDYVIGVRKLGP-Y 160 (327)
T ss_pred CCCCCCCCCCCCEEEccCccceeecCCCCCccHHHHHHHHHHhccCCCeEEEEEeCCCCCcccccHHHHHHHHHHHHh-h
Confidence 110 1 12232221 2578888863221 2333344444433 3
Q ss_pred CcEEEEecCCCCCCchhHHhhhhcCCCCccccccccccccCccccccchhhHHHhhhccCccc--c-HHHHHhhcC----
Q 017718 150 FKAIALTVDTPRLGRREADIKNRFTLPPFLTLKNFQGLDLGKMDEANDSGLAAYVAGQIDRSL--S-WKWLQTITK---- 222 (367)
Q Consensus 150 ~~ai~itvd~p~~g~r~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~--~-~~~l~~~~~---- 222 (367)
++++.+|+.||..... +.. .++.. . .+++|+.++
T Consensus 161 ad~ielN~scP~~~g~----------------~~~-----------------------~~~~~~~~iv~av~~~~~~~~~ 201 (327)
T cd04738 161 ADYLVVNVSSPNTPGL----------------RDL-----------------------QGKEALRELLTAVKEERNKLGK 201 (327)
T ss_pred CCEEEEECCCCCCCcc----------------ccc-----------------------cCHHHHHHHHHHHHHHHhhccc
Confidence 8999999999974110 000 01111 1 236777665
Q ss_pred -CCEEEEecCC------HHHHHHHHHcCCcEEEEcCCCC-------------CCCCCcc----chHHHHHHHHHHhcCCC
Q 017718 223 -LPILVKGVLT------AEDARIAVQAGAAGIIVSNHGA-------------RQLDYVP----ATIMALEEVVKATQGRI 278 (367)
Q Consensus 223 -~Pv~vK~v~~------~~~a~~~~~~G~d~i~vs~~gg-------------~~~~~~~----~~~~~l~~i~~~~~~~~ 278 (367)
+||++|.... .+.++.+.++|+|+|+++|.-. .+..+|+ .+++.+.++++.+++++
T Consensus 202 ~~Pv~vKl~~~~~~~~~~~ia~~l~~aGad~I~~~n~~~~~~~~~~~~~~~~~gG~sG~~~~~~~l~~v~~l~~~~~~~i 281 (327)
T cd04738 202 KVPLLVKIAPDLSDEELEDIADVALEHGVDGIIATNTTISRPGLLRSPLANETGGLSGAPLKERSTEVLRELYKLTGGKI 281 (327)
T ss_pred CCCeEEEeCCCCCHHHHHHHHHHHHHcCCcEEEEECCcccccccccccccCCCCccCChhhhHHHHHHHHHHHHHhCCCC
Confidence 9999999843 2347888999999999987411 0011222 34677888888776679
Q ss_pred cEEEecCCCCHHHHHHHHHcCCCEEEechHHHHHhhccChHHHHHHHHHHHHH
Q 017718 279 PVFLDGGVRRGTDVFKALALGASGIFIGRPVVYSLAAEGEKGVRRVLEMLREE 331 (367)
Q Consensus 279 ~via~GGI~~~~dv~kal~lGAd~V~ig~~~l~~l~~~G~~~v~~~i~~l~~e 331 (367)
|||++|||++++|+.+++.+|||+||+||++++ +|+. ++..+++|
T Consensus 282 pIi~~GGI~t~~da~e~l~aGAd~V~vg~~~~~----~gP~----~~~~i~~~ 326 (327)
T cd04738 282 PIIGVGGISSGEDAYEKIRAGASLVQLYTGLVY----EGPG----LVKRIKRE 326 (327)
T ss_pred cEEEECCCCCHHHHHHHHHcCCCHHhccHHHHh----hCcH----HHHHHHhc
Confidence 999999999999999999999999999999987 3664 44555554
|
DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences, their cellular location and their natural electron acceptor used to reoxidize the flavin group. Members of class 1 are cytosolic enzymes and multimers, while class 2 enzymes are membrane associated, monomeric and use respiratory quinones as their physiological electron acceptors. |
| >TIGR01303 IMP_DH_rel_1 IMP dehydrogenase family protein | Back alignment and domain information |
|---|
Probab=99.78 E-value=3.9e-17 Score=165.86 Aligned_cols=135 Identities=27% Similarity=0.329 Sum_probs=111.2
Q ss_pred HHHhhc-CCCEEEEecCCHHHHHHHHHcCCcEEEEcCCCCCC------CCCccchHHHHHHHHHHhcC-CCcEEEecCCC
Q 017718 216 WLQTIT-KLPILVKGVLTAEDARIAVQAGAAGIIVSNHGARQ------LDYVPATIMALEEVVKATQG-RIPVFLDGGVR 287 (367)
Q Consensus 216 ~l~~~~-~~Pv~vK~v~~~~~a~~~~~~G~d~i~vs~~gg~~------~~~~~~~~~~l~~i~~~~~~-~~~via~GGI~ 287 (367)
++|+.+ ++||++-.+.+.+.++.+.++|||+|.|+..+|+. ..+|.++...+.++++.... .+|||++|||+
T Consensus 259 ~i~~~~~~~~vi~g~~~t~~~~~~l~~~G~d~i~vg~g~Gs~~ttr~~~~~g~~~~~a~~~~~~~~~~~~~~viadGgi~ 338 (475)
T TIGR01303 259 AVRALDLGVPIVAGNVVSAEGVRDLLEAGANIIKVGVGPGAMCTTRMMTGVGRPQFSAVLECAAEARKLGGHVWADGGVR 338 (475)
T ss_pred HHHHHCCCCeEEEeccCCHHHHHHHHHhCCCEEEECCcCCccccCccccCCCCchHHHHHHHHHHHHHcCCcEEEeCCCC
Confidence 788766 79999977999999999999999999998777752 24577888888888655432 69999999999
Q ss_pred CHHHHHHHHHcCCCEEEechHHH----------H-----------Hhh-----------------------ccChHH---
Q 017718 288 RGTDVFKALALGASGIFIGRPVV----------Y-----------SLA-----------------------AEGEKG--- 320 (367)
Q Consensus 288 ~~~dv~kal~lGAd~V~ig~~~l----------~-----------~l~-----------------------~~G~~~--- 320 (367)
++.|++|||++||++||+|+.|- + +++ .+|.+|
T Consensus 339 ~~~di~kala~GA~~vm~g~~~ag~~espg~~~~~~~g~~~k~yrGmgs~~a~~~~~~~~ry~~~~~~~~v~eGv~~~~~ 418 (475)
T TIGR01303 339 HPRDVALALAAGASNVMVGSWFAGTYESPGDLMRDRDGRPYKESFGMASKRAVVARTGADNAFDRARKALFEEGISTSRM 418 (475)
T ss_pred CHHHHHHHHHcCCCEEeechhhcccccCCCceEEeECCEEEEEEecccCHHHHhhccccchhhhhhccccccCceecccc
Confidence 99999999999999999999771 1 111 023332
Q ss_pred --------HHHHHHHHHHHHHHHHHHhCCCChhhhccc
Q 017718 321 --------VRRVLEMLREEFELAMALSGCRSLKEITRD 350 (367)
Q Consensus 321 --------v~~~i~~l~~el~~~m~~~G~~si~~l~~~ 350 (367)
+.+++..+...|+..|.++|+++|.||+..
T Consensus 419 ~~~~~~g~~~~~i~~~~~gl~s~~~y~g~~~i~~~~~~ 456 (475)
T TIGR01303 419 GLDPDRGGVEDLIDHIISGVRSSCTYAGASSLEEFHER 456 (475)
T ss_pred cccCCCCCHHHHHHHHHHHHHHHhhhcCCCcHHHHHhC
Confidence 778999999999999999999999999865
|
This model represents a family of proteins, often annotated as a putative IMP dehydrogenase, related to IMP dehydrogenase and GMP reductase and restricted to the high GC Gram-positive bacteria. All species in which a member is found so far (Corynebacterium glutamicum, Mycobacterium tuberculosis, Streptomyces coelicolor, etc.) also have IMP dehydrogenase as described by TIGRFAMs entry TIGR01302. |
| >cd02810 DHOD_DHPD_FMN Dihydroorotate dehydrogenase (DHOD) and Dihydropyrimidine dehydrogenase (DHPD) FMN-binding domain | Back alignment and domain information |
|---|
Probab=99.77 E-value=5e-17 Score=155.70 Aligned_cols=208 Identities=24% Similarity=0.314 Sum_probs=147.0
Q ss_pred eeEcCeeeccceEeCcccchhccCChhhHHHHHHHHHcCCceeec-CCCCC-----------------------------
Q 017718 63 TTVLGFKISMPIMIAPTAMQKMAHPEGEYATARAASAAGTIMTLS-SWSTS----------------------------- 112 (367)
Q Consensus 63 t~i~g~~l~~Pi~iAPm~~~~l~~~~~e~~~a~aa~~~G~~~~vs-~~~~~----------------------------- 112 (367)
|+++|+++++||++|.-... .+....+.+.+.|..+++. |....
T Consensus 1 ~~~~G~~~~nPv~~aag~~~------~~~~~~~~~~~~g~g~vv~kti~~~~~~~n~~pr~~~~~~~~~~~~~~~~~~n~ 74 (289)
T cd02810 1 VNFLGLKLKNPFGVAAGPLL------KTGELIARAAAAGFGAVVYKTVTLHPRPGNPLPRVARLPPEGESYPEQLGILNS 74 (289)
T ss_pred CeECCEECCCCCEeCCCCCC------CCHHHHHHHHHcCCCeEEeCcccCCCCCCCCCCCEEEeccccccCcccceEeec
Confidence 57899999999999995442 2567788888888777652 22110
Q ss_pred ------CHH----HHHhh----CCCceEEEEeecCCHHHHHHHHHHHHHcCCcEEEEecCCCCCCchhHHhhhhcCCCCc
Q 017718 113 ------SVE----EVAST----GPGIRFFQLYVYKDRNVVAQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFTLPPF 178 (367)
Q Consensus 113 ------~~e----~i~~~----~~~~~~~QLy~~~d~~~~~~~l~ra~~~G~~ai~itvd~p~~g~r~~~~~~~~~~p~~ 178 (367)
..+ ++.+. ...+..+||. ..+.+...+.+++++++|+++|.+|+.||......
T Consensus 75 ~g~~~~g~~~~~~~i~~~~~~~~~~pvi~si~-g~~~~~~~~~a~~~~~~G~d~ielN~~cP~~~~~~------------ 141 (289)
T cd02810 75 FGLPNLGLDVWLQDIAKAKKEFPGQPLIASVG-GSSKEDYVELARKIERAGAKALELNLSCPNVGGGR------------ 141 (289)
T ss_pred CCCCCcCHHHHHHHHHHHHhccCCCeEEEEec-cCCHHHHHHHHHHHHHhCCCEEEEEcCCCCCCCCc------------
Confidence 111 22221 1257788987 56788888899999999999999999999731100
Q ss_pred cccccccccccCccccccchhhHHHhhhccCccc--c-HHHHHhhcCCCEEEEecC--C----HHHHHHHHHcCCcEEEE
Q 017718 179 LTLKNFQGLDLGKMDEANDSGLAAYVAGQIDRSL--S-WKWLQTITKLPILVKGVL--T----AEDARIAVQAGAAGIIV 249 (367)
Q Consensus 179 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~--~-~~~l~~~~~~Pv~vK~v~--~----~~~a~~~~~~G~d~i~v 249 (367)
.+ . .++.+ . .+++|+.+++||++|... + .+.++.+.++|+|+|++
T Consensus 142 ----~~--------------------~--~~~~~~~eiv~~vr~~~~~pv~vKl~~~~~~~~~~~~a~~l~~~Gad~i~~ 195 (289)
T cd02810 142 ----QL--------------------G--QDPEAVANLLKAVKAAVDIPLLVKLSPYFDLEDIVELAKAAERAGADGLTA 195 (289)
T ss_pred ----cc--------------------c--cCHHHHHHHHHHHHHccCCCEEEEeCCCCCHHHHHHHHHHHHHcCCCEEEE
Confidence 00 0 01111 1 237888789999999873 3 34588899999999999
Q ss_pred cCCC-CCC------------CC---Ccc----chHHHHHHHHHHhcCCCcEEEecCCCCHHHHHHHHHcCCCEEEechHH
Q 017718 250 SNHG-ARQ------------LD---YVP----ATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFIGRPV 309 (367)
Q Consensus 250 s~~g-g~~------------~~---~~~----~~~~~l~~i~~~~~~~~~via~GGI~~~~dv~kal~lGAd~V~ig~~~ 309 (367)
+|+- ++. .. ++. ..++.+.++++.++.++|||++|||++++|+.+++++|||+|++||++
T Consensus 196 ~~~~~~~~~~~~~~~~~~~~~~~g~sg~~~~~~~~~~v~~i~~~~~~~ipiia~GGI~~~~da~~~l~~GAd~V~vg~a~ 275 (289)
T cd02810 196 INTISGRVVDLKTVGPGPKRGTGGLSGAPIRPLALRWVARLAARLQLDIPIIGVGGIDSGEDVLEMLMAGASAVQVATAL 275 (289)
T ss_pred EcccCccceecccCccccCCCCCccCcHHHHHHHHHHHHHHHHhcCCCCCEEEECCCCCHHHHHHHHHcCccHheEcHHH
Confidence 8742 110 01 111 246677888877754799999999999999999999999999999999
Q ss_pred HHHhhccChH
Q 017718 310 VYSLAAEGEK 319 (367)
Q Consensus 310 l~~l~~~G~~ 319 (367)
+. +|+.
T Consensus 276 ~~----~GP~ 281 (289)
T cd02810 276 MW----DGPD 281 (289)
T ss_pred Hh----cCcc
Confidence 86 4664
|
DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences and cellular location. Members of class 1 are cytosolic enzymes and multimers while class 2 enzymes are membrane associated and monomeric. The class 1 enzymes can be further divided into subtypes 1A and 1B which are homodimers and heterotetrameric proteins, respectively. DHPD catalyzes the first step in pyrimidine degradation: the NADPH-dependent reduction of uracil and thymine to the corresponding 5,6-dihydropyrimidines. DHPD contains two FAD, two FMN and eight [4Fe-4S] clusters, arranged in two electron transfer chains that pass its homodimeric interface twice. Two of |
| >cd02911 arch_FMN Archeal FMN-binding domain | Back alignment and domain information |
|---|
Probab=99.75 E-value=4.4e-17 Score=151.49 Aligned_cols=185 Identities=16% Similarity=0.161 Sum_probs=129.5
Q ss_pred ceEeCcccchhccCChhhHHHHH-HHHHcCCceeecCCCC----------------------CCHHHHH------hhCCC
Q 017718 73 PIMIAPTAMQKMAHPEGEYATAR-AASAAGTIMTLSSWST----------------------SSVEEVA------STGPG 123 (367)
Q Consensus 73 Pi~iAPm~~~~l~~~~~e~~~a~-aa~~~G~~~~vs~~~~----------------------~~~e~i~------~~~~~ 123 (367)
|+++|||++.+ +.+|++ .|...|+.+ ++.++. .+.+.+. ...+.
T Consensus 1 ~~~lApMag~t------d~~f~~~~~~~~g~~~-~Gg~~~d~~~~~aa~~~~~~~~~ef~~~~~~~~~~~~~~~~~~~~~ 73 (233)
T cd02911 1 PVALASMAGIT------DGDFCRKRADHAGLVF-LGGYNLDERTIEAARKLVKRGRKEFLPDDPLEFIEGEIKALKDSNV 73 (233)
T ss_pred CceeeecCCCc------CHHHHHhhCccCCEEE-EcccccCHHHHHHHHHHHhcCCccccccchHHHHHHHHHHhhccCC
Confidence 89999999876 678998 566666643 433221 1222221 11235
Q ss_pred ceEEEEeecCCHHHHHHHHHHHHHcCCcEEEEecCCCCCCchhHHhhhhcCCCCccccccccccccCccccccchhhHHH
Q 017718 124 IRFFQLYVYKDRNVVAQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLTLKNFQGLDLGKMDEANDSGLAAY 203 (367)
Q Consensus 124 ~~~~QLy~~~d~~~~~~~l~ra~~~G~~ai~itvd~p~~g~r~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~ 203 (367)
+..+|++ +.|++.+.+.++++++. ++.|.+|++||..- +..++ .++.
T Consensus 74 p~~vqi~-g~~~~~~~~aa~~~~~~-~~~ielN~gCP~~~---------------v~~~g----------------~G~~ 120 (233)
T cd02911 74 LVGVNVR-SSSLEPLLNAAALVAKN-AAILEINAHCRQPE---------------MVEAG----------------AGEA 120 (233)
T ss_pred eEEEEec-CCCHHHHHHHHHHHhhc-CCEEEEECCCCcHH---------------HhcCC----------------cchH
Confidence 7899998 78899999999998774 69999999999730 11000 1222
Q ss_pred hhhccCccc--cH-HHHHhhcCCCEEEEecCC-----HHHHHHHHHcCCcEEEEcCCCCCCCCCccchHHHHHHHHHHhc
Q 017718 204 VAGQIDRSL--SW-KWLQTITKLPILVKGVLT-----AEDARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQ 275 (367)
Q Consensus 204 ~~~~~d~~~--~~-~~l~~~~~~Pv~vK~v~~-----~~~a~~~~~~G~d~i~vs~~gg~~~~~~~~~~~~l~~i~~~~~ 275 (367)
++. +++. .+ +.+++ .++||++|.... .+.++.+.++|+|+|.+++ +. .+....++.+++++ +
T Consensus 121 Ll~--~p~~l~eiv~avr~-~~~pVsvKir~g~~~~~~~la~~l~~aG~d~ihv~~--~~--~g~~ad~~~I~~i~--~- 190 (233)
T cd02911 121 LLK--DPERLSEFIKALKE-TGVPVSVKIRAGVDVDDEELARLIEKAGADIIHVDA--MD--PGNHADLKKIRDIS--T- 190 (233)
T ss_pred HcC--CHHHHHHHHHHHHh-cCCCEEEEEcCCcCcCHHHHHHHHHHhCCCEEEECc--CC--CCCCCcHHHHHHhc--C-
Confidence 333 3332 32 37776 589999999732 4568899999999987753 21 12345677787775 3
Q ss_pred CCCcEEEecCCCCHHHHHHHHHcCCCEEEechH
Q 017718 276 GRIPVFLDGGVRRGTDVFKALALGASGIFIGRP 308 (367)
Q Consensus 276 ~~~~via~GGI~~~~dv~kal~lGAd~V~ig~~ 308 (367)
++|||++|||.+++|+.+++..|||+||+||+
T Consensus 191 -~ipVIgnGgI~s~eda~~~l~~GaD~VmiGR~ 222 (233)
T cd02911 191 -ELFIIGNNSVTTIESAKEMFSYGADMVSVARA 222 (233)
T ss_pred -CCEEEEECCcCCHHHHHHHHHcCCCEEEEcCC
Confidence 79999999999999999999999999999994
|
This family of archaeal proteins are part of the NAD(P)H-dependent flavin oxidoreductase (oxidored) FMN-binding family that reduce a range of alternative electron acceptors. Most use FAD/FMN as a cofactor and NAD(P)H as electron donor. Some contain 4Fe-4S cluster to transfer electron from FAD to FMN. The specific function of this group is unknown. |
| >cd02801 DUS_like_FMN Dihydrouridine synthase-like (DUS-like) FMN-binding domain | Back alignment and domain information |
|---|
Probab=99.74 E-value=8.4e-17 Score=148.90 Aligned_cols=197 Identities=20% Similarity=0.243 Sum_probs=142.5
Q ss_pred ceEeCcccchhccCChhhHHHHHHHHHcCCceeecCCCCC------CHH--HHHhhC--CCceEEEEeecCCHHHHHHHH
Q 017718 73 PIMIAPTAMQKMAHPEGEYATARAASAAGTIMTLSSWSTS------SVE--EVASTG--PGIRFFQLYVYKDRNVVAQLV 142 (367)
Q Consensus 73 Pi~iAPm~~~~l~~~~~e~~~a~aa~~~G~~~~vs~~~~~------~~e--~i~~~~--~~~~~~QLy~~~d~~~~~~~l 142 (367)
|+++|||.+.+ |+++++.+.++|...++++|-.. .-. ...... +.|..+||. ..+++...+.+
T Consensus 1 ~~~~aPm~~~~------~~~fR~l~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~qi~-g~~~~~~~~aa 73 (231)
T cd02801 1 KLILAPMVGVT------DLPFRLLCRRYGADLVYTEMISAKALLRGNRKRLRLLTRNPEERPLIVQLG-GSDPETLAEAA 73 (231)
T ss_pred CeEeCCCCCCc------CHHHHHHHHHHCCCEEEecCEEEhhhhhcCHHHHHhhccCccCCCEEEEEc-CCCHHHHHHHH
Confidence 68999997764 89999999999988888877221 111 111111 267899997 67888889999
Q ss_pred HHHHHcCCcEEEEecCCCCCCchhHHhhhhcCCCCccccccccccccCccccccchhhHHHhhhccCccc--c-HHHHHh
Q 017718 143 RRAERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLTLKNFQGLDLGKMDEANDSGLAAYVAGQIDRSL--S-WKWLQT 219 (367)
Q Consensus 143 ~ra~~~G~~ai~itvd~p~~g~r~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~--~-~~~l~~ 219 (367)
++++++|++++.||+.||..-.|. .++ ++ .+.. ++.+ + .+.+++
T Consensus 74 ~~~~~aG~d~ieln~g~p~~~~~~----~~~-----------------------G~----~l~~--~~~~~~eii~~v~~ 120 (231)
T cd02801 74 KIVEELGADGIDLNMGCPSPKVTK----GGA-----------------------GA----ALLK--DPELVAEIVRAVRE 120 (231)
T ss_pred HHHHhcCCCEEEEeCCCCHHHHhC----CCe-----------------------ee----hhcC--CHHHHHHHHHHHHH
Confidence 999999999999999998631110 000 00 0011 2222 2 237777
Q ss_pred hcCCCEEEEecCCH-------HHHHHHHHcCCcEEEEcCCCCCCCCCccchHHHHHHHHHHhcCCCcEEEecCCCCHHHH
Q 017718 220 ITKLPILVKGVLTA-------EDARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDV 292 (367)
Q Consensus 220 ~~~~Pv~vK~v~~~-------~~a~~~~~~G~d~i~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~~~via~GGI~~~~dv 292 (367)
..+.|+.+|..... +.++.+.++|+|+|.+++....+...++..++.+.++++.+ ++||+++|||++.+|+
T Consensus 121 ~~~~~v~vk~r~~~~~~~~~~~~~~~l~~~Gvd~i~v~~~~~~~~~~~~~~~~~~~~i~~~~--~ipvi~~Ggi~~~~d~ 198 (231)
T cd02801 121 AVPIPVTVKIRLGWDDEEETLELAKALEDAGASALTVHGRTREQRYSGPADWDYIAEIKEAV--SIPVIANGDIFSLEDA 198 (231)
T ss_pred hcCCCEEEEEeeccCCchHHHHHHHHHHHhCCCEEEECCCCHHHcCCCCCCHHHHHHHHhCC--CCeEEEeCCCCCHHHH
Confidence 77899999987322 33677889999999995432122234456788888887755 7999999999999999
Q ss_pred HHHHHc-CCCEEEechHHHH
Q 017718 293 FKALAL-GASGIFIGRPVVY 311 (367)
Q Consensus 293 ~kal~l-GAd~V~ig~~~l~ 311 (367)
.+++.. |||+||+||+++.
T Consensus 199 ~~~l~~~gad~V~igr~~l~ 218 (231)
T cd02801 199 LRCLEQTGVDGVMIGRGALG 218 (231)
T ss_pred HHHHHhcCCCEEEEcHHhHh
Confidence 999998 8999999998875
|
Members of this family catalyze the reduction of the 5,6-double bond of a uridine residue on tRNA. Dihydrouridine modification of tRNA is widely observed in prokaryotes and eukaryotes, and also in some archaea. Most dihydrouridines are found in the D loop of t-RNAs. The role of dihydrouridine in tRNA is currently unknown, but may increase conformational flexibility of the tRNA. It is likely that different family members have different substrate specificities, which may overlap. 1VHN, a putative flavin oxidoreductase, has high sequence similarity to DUS. The enzymatic mechanism of 1VHN is not known at the present. |
| >COG0069 GltB Glutamate synthase domain 2 [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.73 E-value=1.3e-16 Score=159.31 Aligned_cols=259 Identities=20% Similarity=0.201 Sum_probs=173.3
Q ss_pred eeeccceEeCcccchhccCChhhHHHHHHHHHcCCceeecCCCCCCHHHHHhhCCCceEEEEeecCCHHHHHHHHHHHHH
Q 017718 68 FKISMPIMIAPTAMQKMAHPEGEYATARAASAAGTIMTLSSWSTSSVEEVASTGPGIRFFQLYVYKDRNVVAQLVRRAER 147 (367)
Q Consensus 68 ~~l~~Pi~iAPm~~~~l~~~~~e~~~a~aa~~~G~~~~vs~~~~~~~e~i~~~~~~~~~~QLy~~~d~~~~~~~l~ra~~ 147 (367)
..+..||.++.|+++.+. ++...++++++.+.|.-+..++.. ...++. ...+..+.|+- ......+.+.+.
T Consensus 163 ~~i~~~~~~~aMS~GAlS-~eA~~alA~a~~~~G~~sntGEGG-e~~~~~--~~~~s~I~Qva-SGRFGV~~~yL~---- 233 (485)
T COG0069 163 LELKKRFVTGAMSFGALS-KEAHEALARAMNRIGTKSNTGEGG-EDPERY--EDGRSAIKQVA-SGRFGVTPEYLA---- 233 (485)
T ss_pred ceeeecccccccCCcccc-HHHHHHHHHHHHHhcCcccCCCCC-CCHHHh--ccccceEEEec-cccCccCHHHhC----
Confidence 667889999999998875 457789999999999877666554 444433 22245678865 333444444443
Q ss_pred cCCcEEEEecCCCCCCchhHHhhhhcCCCC-ccccccccccccCccccccchhh-HHHhhhccCccc-cHH-------HH
Q 017718 148 AGFKAIALTVDTPRLGRREADIKNRFTLPP-FLTLKNFQGLDLGKMDEANDSGL-AAYVAGQIDRSL-SWK-------WL 217 (367)
Q Consensus 148 ~G~~ai~itvd~p~~g~r~~~~~~~~~~p~-~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~d~~~-~~~-------~l 217 (367)
.++++-|-+.--.. --.|-++|. |++.. .++.+.... ...+++.+++++ +.+ .|
T Consensus 234 -~a~~ieIKiaQGAK------PGeGG~Lpg~KV~~~---------IA~~R~~~pG~~~ISP~pHHDiysieDLaqlI~dL 297 (485)
T COG0069 234 -NADAIEIKIAQGAK------PGEGGQLPGEKVTPE---------IAKTRGSPPGVGLISPPPHHDIYSIEDLAQLIKDL 297 (485)
T ss_pred -ccceEEEEeccCCC------CCCCCCCCCccCCHH---------HHHhcCCCCCCCCcCCCCcccccCHHHHHHHHHHH
Confidence 34444444432110 001222332 22210 000000000 012222233333 332 66
Q ss_pred Hhhc-CCCEEEEecC--CHHHHHH-HHHcCCcEEEEcCC-CCCC-------CCCccchHHHHHHHHHHh-----cCCCcE
Q 017718 218 QTIT-KLPILVKGVL--TAEDARI-AVQAGAAGIIVSNH-GARQ-------LDYVPATIMALEEVVKAT-----QGRIPV 280 (367)
Q Consensus 218 ~~~~-~~Pv~vK~v~--~~~~a~~-~~~~G~d~i~vs~~-gg~~-------~~~~~~~~~~l~~i~~~~-----~~~~~v 280 (367)
|+.. ..+|.||.+. ..++... ..+++||.|+|++| |||. -+.|.|....|++..+.+ ++++.|
T Consensus 298 k~~~~~~~I~VKlva~~~v~~iaagvakA~AD~I~IdG~~GGTGAsP~~~~~~~GiP~e~glae~~q~L~~~glRd~v~l 377 (485)
T COG0069 298 KEANPWAKISVKLVAEHGVGTIAAGVAKAGADVITIDGADGGTGASPLTSIDHAGIPWELGLAETHQTLVLNGLRDKVKL 377 (485)
T ss_pred HhcCCCCeEEEEEecccchHHHHhhhhhccCCEEEEcCCCCcCCCCcHhHhhcCCchHHHHHHHHHHHHHHcCCcceeEE
Confidence 7665 3679999984 3455444 88999999999998 5553 245777777788887764 468999
Q ss_pred EEecCCCCHHHHHHHHHcCCCEEEechHHHHHhhcc-----------------------------ChHHHHHHHHHHHHH
Q 017718 281 FLDGGVRRGTDVFKALALGASGIFIGRPVVYSLAAE-----------------------------GEKGVRRVLEMLREE 331 (367)
Q Consensus 281 ia~GGI~~~~dv~kal~lGAd~V~ig~~~l~~l~~~-----------------------------G~~~v~~~i~~l~~e 331 (367)
+++||++|+.||+|+++||||.|.+||+.|+++.|. +++.|.+++..+.+|
T Consensus 378 ~~~Ggl~Tg~DVaka~aLGAd~v~~gTa~lia~GCim~r~CH~~tCp~GIaTqdp~Lrkrl~~~~~~~~v~N~~~~~a~e 457 (485)
T COG0069 378 IADGGLRTGADVAKAAALGADAVGFGTAALVALGCIMCRVCHTGTCPVGIATQDPELRKRLDVEGKPERVINYFTFVAEE 457 (485)
T ss_pred EecCCccCHHHHHHHHHhCcchhhhchHHHHHhhhHhhhhccCCCCCceeeecCHHHHhhcCccccHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999988752 357899999999999
Q ss_pred HHHHHHHhCCCChhhhcccc
Q 017718 332 FELAMALSGCRSLKEITRDH 351 (367)
Q Consensus 332 l~~~m~~~G~~si~~l~~~~ 351 (367)
++++|+.+|.+++.||++..
T Consensus 458 ~rella~lG~~~l~el~g~~ 477 (485)
T COG0069 458 LRELLAALGKRSLSELIGRT 477 (485)
T ss_pred HHHHHHHhCCCCHHHHhcch
Confidence 99999999999999999654
|
|
| >KOG1436 consensus Dihydroorotate dehydrogenase [Nucleotide transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.73 E-value=1.5e-16 Score=149.00 Aligned_cols=121 Identities=27% Similarity=0.434 Sum_probs=99.3
Q ss_pred CCCEEEEecCCH------HHHHHHHHcCCcEEEEcCCC-CC----------CCC---Ccc----chHHHHHHHHHHhcCC
Q 017718 222 KLPILVKGVLTA------EDARIAVQAGAAGIIVSNHG-AR----------QLD---YVP----ATIMALEEVVKATQGR 277 (367)
Q Consensus 222 ~~Pv~vK~v~~~------~~a~~~~~~G~d~i~vs~~g-g~----------~~~---~~~----~~~~~l~~i~~~~~~~ 277 (367)
+.|+++|...+. +.+....+...|+++++|.. .+ .-. +|+ .+.+.++++++.++++
T Consensus 252 ~~pvl~kiapDL~~~el~dia~v~kk~~idg~IvsnttVsrp~~~~~~~~~~etGGLsG~plk~~st~~vR~mY~lt~g~ 331 (398)
T KOG1436|consen 252 KPPVLVKIAPDLSEKELKDIALVVKKLNIDGLIVSNTTVSRPKASLVNKLKEETGGLSGPPLKPISTNTVRAMYTLTRGK 331 (398)
T ss_pred CCceEEEeccchhHHHHHHHHHHHHHhCccceeecCceeecCccccccccccccCCCCCCccchhHHHHHHHHHHhccCC
Confidence 469999998542 33666778999999999842 11 001 222 3567889998888889
Q ss_pred CcEEEecCCCCHHHHHHHHHcCCCEEEechHHHHHhhccChHHHHHHHHHHHHHHHHHHHHhCCCChhhhccc
Q 017718 278 IPVFLDGGVRRGTDVFKALALGASGIFIGRPVVYSLAAEGEKGVRRVLEMLREEFELAMALSGCRSLKEITRD 350 (367)
Q Consensus 278 ~~via~GGI~~~~dv~kal~lGAd~V~ig~~~l~~l~~~G~~~v~~~i~~l~~el~~~m~~~G~~si~~l~~~ 350 (367)
+|||+.|||.||.|+.+.+.+||+.|++++++.| +|+. +++.++.||...|...|+.++.|+.+.
T Consensus 332 IpiIG~GGV~SG~DA~EkiraGASlvQlyTal~y----eGp~----i~~kIk~El~~ll~~kG~t~v~d~iG~ 396 (398)
T KOG1436|consen 332 IPIIGCGGVSSGKDAYEKIRAGASLVQLYTALVY----EGPA----IIEKIKRELSALLKAKGFTSVDDAIGK 396 (398)
T ss_pred CceEeecCccccHhHHHHHhcCchHHHHHHHHhh----cCch----hHHHHHHHHHHHHHhcCCCcHHHhccC
Confidence 9999999999999999999999999999998877 5764 888999999999999999999999865
|
|
| >PF01180 DHO_dh: Dihydroorotate dehydrogenase; InterPro: IPR012135 Dihydroorotate dehydrogenase (DHOD), also known as dihydroorotate oxidase, catalyses the fourth step in de novo pyrimidine biosynthesis, the stereospecific oxidation of (S)-dihydroorotate to orotate, which is the only redox reaction in this pathway | Back alignment and domain information |
|---|
Probab=99.72 E-value=2.2e-16 Score=151.91 Aligned_cols=113 Identities=25% Similarity=0.342 Sum_probs=82.5
Q ss_pred HHHhhcCCCEEEEecC---CH---HHHHHHHHcCCcEEEEcCCCCC----------CC----C---Ccc----chHHHHH
Q 017718 216 WLQTITKLPILVKGVL---TA---EDARIAVQAGAAGIIVSNHGAR----------QL----D---YVP----ATIMALE 268 (367)
Q Consensus 216 ~l~~~~~~Pv~vK~v~---~~---~~a~~~~~~G~d~i~vs~~gg~----------~~----~---~~~----~~~~~l~ 268 (367)
++++..++||++|+.. +. ..+..+.+.|+++|++.|.-.. .. . +|+ .++..+.
T Consensus 156 ~v~~~~~~Pv~vKL~p~~~~~~~~~~~~~~~~~g~~gi~~~Nt~~~~~~id~~~~~~~~~~~~gGlSG~~i~p~aL~~V~ 235 (295)
T PF01180_consen 156 AVREAVDIPVFVKLSPNFTDIEPFAIAAELAADGADGIVAINTFGQGDAIDLETRRPVLGNGFGGLSGPAIRPIALRWVR 235 (295)
T ss_dssp HHHHHHSSEEEEEE-STSSCHHHHHHHHHHHTHTECEEEE---EEEEE-EETTTTEESSSGGEEEEEEGGGHHHHHHHHH
T ss_pred HHHhccCCCEEEEecCCCCchHHHHHHHHhhccceeEEEEecCccCcccccchhcceeeccccCCcCchhhhhHHHHHHH
Confidence 7777789999999986 22 2355566889999998774211 01 1 122 2556778
Q ss_pred HHHHHhcCCCcEEEecCCCCHHHHHHHHHcCCCEEEechHHHHHhhccChHHHHHHHHHHHHHHHHHH
Q 017718 269 EVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFIGRPVVYSLAAEGEKGVRRVLEMLREEFELAM 336 (367)
Q Consensus 269 ~i~~~~~~~~~via~GGI~~~~dv~kal~lGAd~V~ig~~~l~~l~~~G~~~v~~~i~~l~~el~~~m 336 (367)
++++.++.++|||+.|||.|++|+.++|.+||++||++|.+++. |+. +++.+.+||+.+|
T Consensus 236 ~~~~~~~~~i~Iig~GGI~s~~da~e~l~aGA~~Vqv~Sal~~~----Gp~----~~~~i~~~L~~~l 295 (295)
T PF01180_consen 236 ELRKALGQDIPIIGVGGIHSGEDAIEFLMAGASAVQVCSALIYR----GPG----VIRRINRELEEWL 295 (295)
T ss_dssp HHHHHTTTSSEEEEESS--SHHHHHHHHHHTESEEEESHHHHHH----GTT----HHHHHHHHHHHHH
T ss_pred HHHhccccceEEEEeCCcCCHHHHHHHHHhCCCHheechhhhhc----CcH----HHHHHHHHHHhhC
Confidence 88888866799999999999999999999999999999999873 664 6778888888876
|
DHODs can be divided into two mains classes: class 1 cytosolic enzymes found primarily in Gram-positive bacteria, and class 2 membrane-associated enzymes found primarily in eukaryotic mitochondria and Gram-negative bacteria []. The class 1 DHODs can be further divided into subclasses 1A and 1B, which differ in their structural organisation and use of electron acceptors. The 1A enzyme is a homodimer of two PyrD subunits where each subunit forms a TIM barrel fold with a bound FMN cofactor located near the top of the barrel []. Fumarate is the natural electron acceptor for this enzyme. The 1B enzyme, in contrast is a heterotetramer composed of a central, FMN-containing, PyrD homodimer resembling the 1A homodimer, and two additional PyrK subunits which contain FAD and a 2Fe-2S cluster []. These additional groups allow the enzyme to use NAD(+) as its natural electron acceptor. The class 2 membrane-associated enzymes are monomers which have the FMN-containing TIM barrel domain found in the class 1 PyrD subunit, and an additional N-terminal alpha helical domain [, ]. These enzymes use respiratory quinones as the physiological electron acceptor. This entry represents the FMN-binding subunit common to all classes of dihydroorotate dehydrogenase.; GO: 0004152 dihydroorotate dehydrogenase activity, 0006222 UMP biosynthetic process, 0055114 oxidation-reduction process; PDB: 3GYE_A 3GZ3_A 3MHU_B 3MJY_A 3TQ0_A 2B4G_C 1EP3_A 1EP2_A 1EP1_A 3I6R_A .... |
| >KOG2335 consensus tRNA-dihydrouridine synthase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=99.72 E-value=6.2e-16 Score=148.17 Aligned_cols=202 Identities=24% Similarity=0.309 Sum_probs=147.7
Q ss_pred cCeeeccce-EeCcccchhccCChhhHHHHHHHHHcCCceeecCCCCC-C-H--HHHH----hhCC--CceEEEEeecCC
Q 017718 66 LGFKISMPI-MIAPTAMQKMAHPEGEYATARAASAAGTIMTLSSWSTS-S-V--EEVA----STGP--GIRFFQLYVYKD 134 (367)
Q Consensus 66 ~g~~l~~Pi-~iAPm~~~~l~~~~~e~~~a~aa~~~G~~~~vs~~~~~-~-~--e~i~----~~~~--~~~~~QLy~~~d 134 (367)
|-.+...|. ++|||-..+ ++++++.+++.|...+.+.|-.. + . |... ...+ .|..+|+- .+|
T Consensus 12 f~~~~~~~~ri~APMvd~S------~l~fR~L~R~y~~~l~yTpMi~a~~fv~~ek~r~~~~st~~~D~PLIvQf~-~nd 84 (358)
T KOG2335|consen 12 FWSKQGRPKRIVAPMVDYS------ELAFRRLVRLYGADLLYTPMIHAKTFVHSEKYRDSELSTSPEDRPLIVQFG-GND 84 (358)
T ss_pred hhhhcCCcccccCCccccc------HHHHHHHHHHhCCceEechHHHHHHHhcCccchhhhcccCCCCCceEEEEc-CCC
Confidence 333444442 699996554 89999999999999988877211 0 0 1111 1122 68999986 789
Q ss_pred HHHHHHHHHHHHHcCCcEEEEecCCCCCCchhHHhhhhcCCCCccccccccccccCccccccchhhHHHhhhccCcccc-
Q 017718 135 RNVVAQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLTLKNFQGLDLGKMDEANDSGLAAYVAGQIDRSLS- 213 (367)
Q Consensus 135 ~~~~~~~l~ra~~~G~~ai~itvd~p~~g~r~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~- 213 (367)
++.+.+.++.+...+ ++|++|++||.. + -.+-+| +.+++. ++.+.
T Consensus 85 p~~ll~Aa~lv~~y~-D~idlNcGCPq~-~---a~~g~y---------------------------Ga~L~~--~~eLv~ 130 (358)
T KOG2335|consen 85 PENLLKAARLVQPYC-DGIDLNCGCPQK-V---AKRGGY---------------------------GAFLMD--NPELVG 130 (358)
T ss_pred HHHHHHHHHHhhhhc-CcccccCCCCHH-H---HhcCCc---------------------------cceecc--CHHHHH
Confidence 999999988888877 999999999952 0 011111 112222 22221
Q ss_pred --HHHHHhhcCCCEEEEecC------CHHHHHHHHHcCCcEEEEcCCCCCC----CCCccchHHHHHHHHHHhcCCCcEE
Q 017718 214 --WKWLQTITKLPILVKGVL------TAEDARIAVQAGAAGIIVSNHGARQ----LDYVPATIMALEEVVKATQGRIPVF 281 (367)
Q Consensus 214 --~~~l~~~~~~Pv~vK~v~------~~~~a~~~~~~G~d~i~vs~~gg~~----~~~~~~~~~~l~~i~~~~~~~~~vi 281 (367)
...+++.++.||.+|+.. +.+.++++.++|++.++| ||.+. ...++..++.++.+++.+++ +|||
T Consensus 131 e~V~~v~~~l~~pVs~KIRI~~d~~kTvd~ak~~e~aG~~~ltV--HGRtr~~kg~~~~pad~~~i~~v~~~~~~-ipvi 207 (358)
T KOG2335|consen 131 EMVSAVRANLNVPVSVKIRIFVDLEKTVDYAKMLEDAGVSLLTV--HGRTREQKGLKTGPADWEAIKAVRENVPD-IPVI 207 (358)
T ss_pred HHHHHHHhhcCCCeEEEEEecCcHHHHHHHHHHHHhCCCcEEEE--ecccHHhcCCCCCCcCHHHHHHHHHhCcC-CcEE
Confidence 127788889999999983 456699999999999999 66652 22578899999999998854 9999
Q ss_pred EecCCCCHHHHHHHHH-cCCCEEEechHHHH
Q 017718 282 LDGGVRRGTDVFKALA-LGASGIFIGRPVVY 311 (367)
Q Consensus 282 a~GGI~~~~dv~kal~-lGAd~V~ig~~~l~ 311 (367)
++|+|.+.+|+..++. .|||+||+|+..|+
T Consensus 208 aNGnI~~~~d~~~~~~~tG~dGVM~arglL~ 238 (358)
T KOG2335|consen 208 ANGNILSLEDVERCLKYTGADGVMSARGLLY 238 (358)
T ss_pred eeCCcCcHHHHHHHHHHhCCceEEecchhhc
Confidence 9999999999999999 89999999995443
|
|
| >TIGR01036 pyrD_sub2 dihydroorotate dehydrogenase, subfamily 2 | Back alignment and domain information |
|---|
Probab=99.70 E-value=2.5e-15 Score=146.89 Aligned_cols=108 Identities=22% Similarity=0.300 Sum_probs=79.6
Q ss_pred HHHhhcC-------CCEEEEecCC------HHHHHHHHHcCCcEEEEcCCCC-------------CCCCCccc----hHH
Q 017718 216 WLQTITK-------LPILVKGVLT------AEDARIAVQAGAAGIIVSNHGA-------------RQLDYVPA----TIM 265 (367)
Q Consensus 216 ~l~~~~~-------~Pv~vK~v~~------~~~a~~~~~~G~d~i~vs~~gg-------------~~~~~~~~----~~~ 265 (367)
++++.++ +||++|+..+ .+.|+.+.++|+|+|++.|+-- ...-+|++ ...
T Consensus 197 ~V~~~~~~~~~~~~~Pv~vKLsP~~~~~~i~~ia~~~~~~GadGi~l~NT~~~~~~~~~~~~~~~~GGlSG~~i~p~al~ 276 (335)
T TIGR01036 197 AVKQEQDGLRRVHRVPVLVKIAPDLTESDLEDIADSLVELGIDGVIATNTTVSRSLVQGPKNSDETGGLSGKPLQDKSTE 276 (335)
T ss_pred HHHHHHHhhhhccCCceEEEeCCCCCHHHHHHHHHHHHHhCCcEEEEECCCCccccccCccccCCCCcccCHHHHHHHHH
Confidence 5555554 9999999853 2347889999999999998421 00112222 445
Q ss_pred HHHHHHHHhcCCCcEEEecCCCCHHHHHHHHHcCCCEEEechHHHHHhhccChHHHHHHHHHHHHH
Q 017718 266 ALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFIGRPVVYSLAAEGEKGVRRVLEMLREE 331 (367)
Q Consensus 266 ~l~~i~~~~~~~~~via~GGI~~~~dv~kal~lGAd~V~ig~~~l~~l~~~G~~~v~~~i~~l~~e 331 (367)
.+.++++.+++++|||+.|||.+++|+.++|.+||++|++||++++ +|+. +++.+.+|
T Consensus 277 ~v~~~~~~~~~~ipiig~GGI~~~~da~e~l~aGA~~Vqv~ta~~~----~Gp~----~~~~i~~~ 334 (335)
T TIGR01036 277 IIRRLYAELQGRLPIIGVGGISSAQDALEKIRAGASLLQIYSGFIY----WGPP----LVKEIVKE 334 (335)
T ss_pred HHHHHHHHhCCCCCEEEECCCCCHHHHHHHHHcCCcHHHhhHHHHH----hCch----HHHHHHhh
Confidence 6677777666689999999999999999999999999999999987 3664 44455544
|
The subfamilies 1 and 2 share extensive homology, particularly toward the C-terminus. This subfamily has a longer N-terminal region. |
| >PRK07807 inosine 5-monophosphate dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=99.68 E-value=6.2e-15 Score=149.95 Aligned_cols=135 Identities=30% Similarity=0.377 Sum_probs=108.9
Q ss_pred HHHhhc-CCCEEEEecCCHHHHHHHHHcCCcEEEEcCCCCC----CC--CCccchHHHHHHHHHHhcC-CCcEEEecCCC
Q 017718 216 WLQTIT-KLPILVKGVLTAEDARIAVQAGAAGIIVSNHGAR----QL--DYVPATIMALEEVVKATQG-RIPVFLDGGVR 287 (367)
Q Consensus 216 ~l~~~~-~~Pv~vK~v~~~~~a~~~~~~G~d~i~vs~~gg~----~~--~~~~~~~~~l~~i~~~~~~-~~~via~GGI~ 287 (367)
++|+.+ +++|+...+.+.+.|+.+.++|+|+|-|.-..|. +. ..+.|.+.++.++.+.... .+|||++|||+
T Consensus 261 ~ik~~~p~~~v~agnv~t~~~a~~l~~aGad~v~vgig~gsictt~~~~~~~~p~~~av~~~~~~~~~~~~~via~ggi~ 340 (479)
T PRK07807 261 AVRALDPGVPIVAGNVVTAEGTRDLVEAGADIVKVGVGPGAMCTTRMMTGVGRPQFSAVLECAAAARELGAHVWADGGVR 340 (479)
T ss_pred HHHHHCCCCeEEeeccCCHHHHHHHHHcCCCEEEECccCCcccccccccCCchhHHHHHHHHHHHHHhcCCcEEecCCCC
Confidence 778777 6889888999999999999999999988543332 11 2356889999999876533 79999999999
Q ss_pred CHHHHHHHHHcCCCEEEechHHHH---------------------------Hhh-----------------ccChHH---
Q 017718 288 RGTDVFKALALGASGIFIGRPVVY---------------------------SLA-----------------AEGEKG--- 320 (367)
Q Consensus 288 ~~~dv~kal~lGAd~V~ig~~~l~---------------------------~l~-----------------~~G~~~--- 320 (367)
++.|+.|+|++||++||+|+.|.- ++. .+|.++
T Consensus 341 ~~~~~~~al~~ga~~v~~g~~~ag~~Espg~~~~~~~g~~~k~yrgmgs~~a~~~~~~~~~~~~~~~~~~~~eGv~~~~~ 420 (479)
T PRK07807 341 HPRDVALALAAGASNVMIGSWFAGTYESPGDLMRDRDGRPYKESFGMASARAVAARTAGDSAFDRARKALFEEGISTSRM 420 (479)
T ss_pred CHHHHHHHHHcCCCeeeccHhhccCccCCCceEeccCCeEEEEeeccccHHHHhcccCccchhhhcccCCCCCCccceee
Confidence 999999999999999999998731 111 012111
Q ss_pred --------HHHHHHHHHHHHHHHHHHhCCCChhhhccc
Q 017718 321 --------VRRVLEMLREEFELAMALSGCRSLKEITRD 350 (367)
Q Consensus 321 --------v~~~i~~l~~el~~~m~~~G~~si~~l~~~ 350 (367)
+.+++..|...|+..|.++|..+|.||+..
T Consensus 421 ~~~~~~g~~~~~~~~l~~glr~~~~y~g~~~i~~~~~~ 458 (479)
T PRK07807 421 YLDPGRPGVEDLLDHITSGVRSSCTYAGARTLAEFHER 458 (479)
T ss_pred eccCCCCCHHHHHHHHHHHHHHHHhhcCcCcHHHHHhC
Confidence 778899999999999999999999999855
|
|
| >PRK11750 gltB glutamate synthase subunit alpha; Provisional | Back alignment and domain information |
|---|
Probab=99.66 E-value=4.6e-15 Score=163.47 Aligned_cols=252 Identities=21% Similarity=0.139 Sum_probs=166.8
Q ss_pred cceEeCcccchhccCChhhHHHHHHHHHcCCceeecCCCCCCHHHHHhhCCCceEEEEeecCCHHHHHHHHHHHHHcCCc
Q 017718 72 MPIMIAPTAMQKMAHPEGEYATARAASAAGTIMTLSSWSTSSVEEVASTGPGIRFFQLYVYKDRNVVAQLVRRAERAGFK 151 (367)
Q Consensus 72 ~Pi~iAPm~~~~l~~~~~e~~~a~aa~~~G~~~~vs~~~~~~~e~i~~~~~~~~~~QLy~~~d~~~~~~~l~ra~~~G~~ 151 (367)
.+|.++.|+++.+. ++...++++++.+.|+....|+. ....++.. .......+|+-. .....+.+.+.. ++
T Consensus 859 ~rf~~~aMSfGalS-~eA~~aLA~a~~~~G~~sntGEG-G~~p~~~~-~~~~~~i~QiaS-GrFGv~~e~l~~-----a~ 929 (1485)
T PRK11750 859 KRFDSAAMSIGALS-PEAHEALAIAMNRLGGRSNSGEG-GEDPARYG-TEKVSKIKQVAS-GRFGVTPAYLVN-----AE 929 (1485)
T ss_pred cccccccCCCCccC-HHHHHHHHHHHHHhCCceecCCC-CCCHHHHh-cccCCeEEEccC-CcCCCCHHHhcc-----CC
Confidence 36899999998764 46778999999999988766655 34555542 222456888753 333333334432 56
Q ss_pred EEEEecCCCCCCchhHHhhhhcCCCC-ccccccccccccCccccccch-hhHHHhhhccCccc-cHH-------HHHhhc
Q 017718 152 AIALTVDTPRLGRREADIKNRFTLPP-FLTLKNFQGLDLGKMDEANDS-GLAAYVAGQIDRSL-SWK-------WLQTIT 221 (367)
Q Consensus 152 ai~itvd~p~~g~r~~~~~~~~~~p~-~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~d~~~-~~~-------~l~~~~ 221 (367)
.|-|.+.--.. --.|.++|. |++. - +++.... .....+++.+++++ +.+ .||+..
T Consensus 930 ~ieIKi~QGAK------PG~GG~Lpg~KV~~-~--------IA~~R~~~~G~~liSP~phhdiySieDL~qlI~~Lk~~~ 994 (1485)
T PRK11750 930 VLQIKVAQGAK------PGEGGQLPGDKVNP-L--------IARLRYSVPGVTLISPPPHHDIYSIEDLAQLIFDLKQVN 994 (1485)
T ss_pred EEEEEecCCCC------CCCCCcCccccCCH-H--------HHHHcCCCCCCCCCCCCCCccCCCHHHHHHHHHHHHHhC
Confidence 66665542221 001222332 2220 0 0000000 00112222233343 322 677766
Q ss_pred -CCCEEEEecCC--H-HHHHHHHHcCCcEEEEcCCC-CCC-------CCCccchHHHHHHHHHHh-----cCCCcEEEec
Q 017718 222 -KLPILVKGVLT--A-EDARIAVQAGAAGIIVSNHG-ARQ-------LDYVPATIMALEEVVKAT-----QGRIPVFLDG 284 (367)
Q Consensus 222 -~~Pv~vK~v~~--~-~~a~~~~~~G~d~i~vs~~g-g~~-------~~~~~~~~~~l~~i~~~~-----~~~~~via~G 284 (367)
+.||.||.+.. . ..+.-+.++|+|.|+++||. |+. -+.|.|....|.++.+.+ ++++.|+++|
T Consensus 995 ~~~~I~VKl~a~~~vg~ia~gvaka~aD~I~IdG~~GGTGAap~~~~~~~GlP~e~gL~~~~~~L~~~glR~rv~l~a~G 1074 (1485)
T PRK11750 995 PKALVSVKLVSEPGVGTIATGVAKAYADLITISGYDGGTGASPLTSVKYAGSPWELGLAETHQALVANGLRHKIRLQVDG 1074 (1485)
T ss_pred CCCcEEEEEccCCCccHHHhChhhcCCCEEEEeCCCCCcccccHHHHhhCCccHHHHHHHHHHHHHhcCCCcceEEEEcC
Confidence 57999999843 2 23445778999999999984 442 134666556677776654 4689999999
Q ss_pred CCCCHHHHHHHHHcCCCEEEechHHHHHhhcc----------------------------ChHHHHHHHHHHHHHHHHHH
Q 017718 285 GVRRGTDVFKALALGASGIFIGRPVVYSLAAE----------------------------GEKGVRRVLEMLREEFELAM 336 (367)
Q Consensus 285 GI~~~~dv~kal~lGAd~V~ig~~~l~~l~~~----------------------------G~~~v~~~i~~l~~el~~~m 336 (367)
|++|+.|++|+++||||.|.+||++|++++|. .++.|.+++..+.+|++.+|
T Consensus 1075 gl~t~~Dv~kA~aLGAd~~~~gt~~lialGCi~~r~Ch~~~CPvGiaTqd~~lr~~~~~~~~~~v~nf~~~~~~el~~~l 1154 (1485)
T PRK11750 1075 GLKTGLDVIKAAILGAESFGFGTGPMVALGCKYLRICHLNNCATGVATQDEKLRKNHYHGLPEMVMNYFEFIAEETREWM 1154 (1485)
T ss_pred CcCCHHHHHHHHHcCCcccccchHHHHHcCCHHHHhhcCCCCCcEEeccCHHHHhhhccchHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999998762 13579999999999999999
Q ss_pred HHhCCCChhhh
Q 017718 337 ALSGCRSLKEI 347 (367)
Q Consensus 337 ~~~G~~si~~l 347 (367)
..+|.++++|+
T Consensus 1155 a~lG~~s~~el 1165 (1485)
T PRK11750 1155 AQLGVRSLEDL 1165 (1485)
T ss_pred HHhCCCCHHHh
Confidence 99999999999
|
|
| >TIGR03151 enACPred_II putative enoyl-(acyl-carrier-protein) reductase II | Back alignment and domain information |
|---|
Probab=99.65 E-value=1.2e-14 Score=140.48 Aligned_cols=184 Identities=22% Similarity=0.245 Sum_probs=129.9
Q ss_pred eEcCeeeccceEeCcccchhccCChhhHHHHHHHHHcCCceeecCCCCCCHHHH-------HhhCCCceEEEEeecCCHH
Q 017718 64 TVLGFKISMPIMIAPTAMQKMAHPEGEYATARAASAAGTIMTLSSWSTSSVEEV-------ASTGPGIRFFQLYVYKDRN 136 (367)
Q Consensus 64 ~i~g~~l~~Pi~iAPm~~~~l~~~~~e~~~a~aa~~~G~~~~vs~~~~~~~e~i-------~~~~~~~~~~QLy~~~d~~ 136 (367)
+++| +..||+.+||++.+ +..++.++.++|...+++... .+.|++ .+....|+.+.+.... +.
T Consensus 6 ~~lg--i~~Pii~apM~~~s------~~~la~avs~aGglG~l~~~~-~~~~~l~~~i~~~~~~t~~pfgvn~~~~~-~~ 75 (307)
T TIGR03151 6 DLLG--IEYPIFQGGMAWVA------TGSLAAAVSNAGGLGIIGAGN-APPDVVRKEIRKVKELTDKPFGVNIMLLS-PF 75 (307)
T ss_pred HHhC--CCCCEEcCCCCCCC------CHHHHHHHHhCCCcceecccc-CCHHHHHHHHHHHHHhcCCCcEEeeecCC-CC
Confidence 3455 66899999998753 568999999999888876432 334433 2222245555543221 11
Q ss_pred HHHHHHHHHHHcCCcEEEEecCCCCCCchhHHhhhhcCCCCccccccccccccCccccccchhhHHHhhhccCccccHHH
Q 017718 137 VVAQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLTLKNFQGLDLGKMDEANDSGLAAYVAGQIDRSLSWKW 216 (367)
Q Consensus 137 ~~~~~l~ra~~~G~~ai~itvd~p~~g~r~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~ 216 (367)
..+.++.+.+.|++.+.++.+.| .-..++
T Consensus 76 -~~~~~~~~~~~~v~~v~~~~g~p--------------------------------------------------~~~i~~ 104 (307)
T TIGR03151 76 -VDELVDLVIEEKVPVVTTGAGNP--------------------------------------------------GKYIPR 104 (307)
T ss_pred -HHHHHHHHHhCCCCEEEEcCCCc--------------------------------------------------HHHHHH
Confidence 23456666677877766533211 001125
Q ss_pred HHhhcCCCEEEEecCCHHHHHHHHHcCCcEEEEcCC--CCCCCCCccchHHHHHHHHHHhcCCCcEEEecCCCCHHHHHH
Q 017718 217 LQTITKLPILVKGVLTAEDARIAVQAGAAGIIVSNH--GARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFK 294 (367)
Q Consensus 217 l~~~~~~Pv~vK~v~~~~~a~~~~~~G~d~i~vs~~--gg~~~~~~~~~~~~l~~i~~~~~~~~~via~GGI~~~~dv~k 294 (367)
+|+. +++|+. .+.+.++++.+.++|+|+|+++++ ||+. +..+++..++++++.+ ++|||++|||.+++|+.+
T Consensus 105 lk~~-g~~v~~-~v~s~~~a~~a~~~GaD~Ivv~g~eagGh~--g~~~~~~ll~~v~~~~--~iPviaaGGI~~~~~~~~ 178 (307)
T TIGR03151 105 LKEN-GVKVIP-VVASVALAKRMEKAGADAVIAEGMESGGHI--GELTTMALVPQVVDAV--SIPVIAAGGIADGRGMAA 178 (307)
T ss_pred HHHc-CCEEEE-EcCCHHHHHHHHHcCCCEEEEECcccCCCC--CCCcHHHHHHHHHHHh--CCCEEEECCCCCHHHHHH
Confidence 5543 677765 678999999999999999999875 4442 3345889999999877 799999999999999999
Q ss_pred HHHcCCCEEEechHHHHHhh
Q 017718 295 ALALGASGIFIGRPVVYSLA 314 (367)
Q Consensus 295 al~lGAd~V~ig~~~l~~l~ 314 (367)
++++|||+|++||.|+....
T Consensus 179 al~~GA~gV~iGt~f~~t~E 198 (307)
T TIGR03151 179 AFALGAEAVQMGTRFLCAKE 198 (307)
T ss_pred HHHcCCCEeecchHHhcccc
Confidence 99999999999999987543
|
This oxidoreductase of the 2-nitropropane dioxygenase family (pfam03060) is commonly found in apparent operons with genes involved in fatty acid biosynthesis. Furthermore, this genomic context generally includes the fabG 3-oxoacyl-[ACP] reductase and lacks the fabI enoyl-[ACP] reductase. |
| >PF03060 NMO: Nitronate monooxygenase; InterPro: IPR004136 2-Nitropropane dioxygenase (1 | Back alignment and domain information |
|---|
Probab=99.61 E-value=4.4e-14 Score=138.02 Aligned_cols=93 Identities=30% Similarity=0.467 Sum_probs=69.2
Q ss_pred HHHhhcCCCEEEEecCCHHHHHHHHHcCCcEEEEcCC--CCCCC-CCccchHHHHHHHHHHhcCCCcEEEecCCCCHHHH
Q 017718 216 WLQTITKLPILVKGVLTAEDARIAVQAGAAGIIVSNH--GARQL-DYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDV 292 (367)
Q Consensus 216 ~l~~~~~~Pv~vK~v~~~~~a~~~~~~G~d~i~vs~~--gg~~~-~~~~~~~~~l~~i~~~~~~~~~via~GGI~~~~dv 292 (367)
.+++ .++.++. .+.+.++|+.+.+.|+|+|++.|. ||+.. +.+ +++.+++++++.+ ++|||+.|||.++.++
T Consensus 131 ~l~~-~gi~v~~-~v~s~~~A~~a~~~G~D~iv~qG~eAGGH~g~~~~-~~~~L~~~v~~~~--~iPViaAGGI~dg~~i 205 (330)
T PF03060_consen 131 RLHA-AGIKVIP-QVTSVREARKAAKAGADAIVAQGPEAGGHRGFEVG-STFSLLPQVRDAV--DIPVIAAGGIADGRGI 205 (330)
T ss_dssp HHHH-TT-EEEE-EESSHHHHHHHHHTT-SEEEEE-TTSSEE---SSG--HHHHHHHHHHH---SS-EEEESS--SHHHH
T ss_pred HHHH-cCCcccc-ccCCHHHHHHhhhcCCCEEEEeccccCCCCCcccc-ceeeHHHHHhhhc--CCcEEEecCcCCHHHH
Confidence 4443 5777765 578999999999999999999874 66644 222 6888899999888 7999999999999999
Q ss_pred HHHHHcCCCEEEechHHHHHh
Q 017718 293 FKALALGASGIFIGRPVVYSL 313 (367)
Q Consensus 293 ~kal~lGAd~V~ig~~~l~~l 313 (367)
..+|++|||+|++||.|+...
T Consensus 206 aaal~lGA~gV~~GTrFl~t~ 226 (330)
T PF03060_consen 206 AAALALGADGVQMGTRFLATE 226 (330)
T ss_dssp HHHHHCT-SEEEESHHHHTST
T ss_pred HHHHHcCCCEeecCCeEEecc
Confidence 999999999999999998643
|
13.11.32 from EC) catalyses the oxidation of nitroalkanes into their corresponding carbonyl compounds and nitrite using eithr FAD or FMN as a cofactor []. This entry also includes fatty acid synthase subunit beta (2.3.1.86 from EC), which catalyses the formation of long- chain fatty acids from acetyl-CoA, malonyl-CoA and NADPH. The beta subunit contains domains for: [acyl-carrier protein] acetyltransferase and malonyltransferase, S-acyl fatty acid synthase thioesterase, enoyl-[acyl-carrier protein] reductase, and 3-hydroxypalmitoyl-[acyl-carrier protein] dehydratase. ; GO: 0018580 nitronate monooxygenase activity, 0055114 oxidation-reduction process; PDB: 2Z6I_B 2Z6J_B 3BW2_A 3BW3_A 3BW4_A 2GJL_A 2GJN_A 3BO9_A. |
| >TIGR00736 nifR3_rel_arch TIM-barrel protein, putative | Back alignment and domain information |
|---|
Probab=99.61 E-value=1.4e-14 Score=133.88 Aligned_cols=149 Identities=14% Similarity=0.107 Sum_probs=110.9
Q ss_pred CceEEEEeecCCHHHHHHHHHHHHHcCCcEEEEecCCCCCCchhHHhhhhcCCCCccccccccccccCccccccchhhHH
Q 017718 123 GIRFFQLYVYKDRNVVAQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLTLKNFQGLDLGKMDEANDSGLAA 202 (367)
Q Consensus 123 ~~~~~QLy~~~d~~~~~~~l~ra~~~G~~ai~itvd~p~~g~r~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~ 202 (367)
.+..+|+. ..+++...+.++.+++ +++.|.||+.||++ ++...+ .+.
T Consensus 68 ~~vivnv~-~~~~ee~~~~a~~v~~-~~d~IdiN~gCP~~---------------~v~~~g----------------~G~ 114 (231)
T TIGR00736 68 ALVSVNVR-FVDLEEAYDVLLTIAE-HADIIEINAHCRQP---------------EITEIG----------------IGQ 114 (231)
T ss_pred CCEEEEEe-cCCHHHHHHHHHHHhc-CCCEEEEECCCCcH---------------HHcCCC----------------Cch
Confidence 57899987 6788888888888766 89999999999983 011000 112
Q ss_pred HhhhccCccc--cH-HHHHhhcCCCEEEEecCC------HHHHHHHHHcCCcEEEEcCCCCCCCCCccchHHHHHHHHHH
Q 017718 203 YVAGQIDRSL--SW-KWLQTITKLPILVKGVLT------AEDARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKA 273 (367)
Q Consensus 203 ~~~~~~d~~~--~~-~~l~~~~~~Pv~vK~v~~------~~~a~~~~~~G~d~i~vs~~gg~~~~~~~~~~~~l~~i~~~ 273 (367)
.+.. |++. .+ +.+++ .++||++|+... .+.++.+.++|+|+|.|+ .++. ..+...++.++++++.
T Consensus 115 ~Ll~--dp~~l~~iv~av~~-~~~PVsvKiR~~~~~~~~~~~a~~l~~aGad~i~Vd--~~~~-g~~~a~~~~I~~i~~~ 188 (231)
T TIGR00736 115 ELLK--NKELLKEFLTKMKE-LNKPIFVKIRGNCIPLDELIDALNLVDDGFDGIHVD--AMYP-GKPYADMDLLKILSEE 188 (231)
T ss_pred hhcC--CHHHHHHHHHHHHc-CCCcEEEEeCCCCCcchHHHHHHHHHHcCCCEEEEe--eCCC-CCchhhHHHHHHHHHh
Confidence 2333 3333 22 25663 589999999852 256899999999999994 3321 1122688999999987
Q ss_pred hcCCCcEEEecCCCCHHHHHHHHHcCCCEEEechHHHH
Q 017718 274 TQGRIPVFLDGGVRRGTDVFKALALGASGIFIGRPVVY 311 (367)
Q Consensus 274 ~~~~~~via~GGI~~~~dv~kal~lGAd~V~ig~~~l~ 311 (367)
++ .+|||++|||.+.+|+.+++..|||+||+||+.+.
T Consensus 189 ~~-~ipIIgNGgI~s~eda~e~l~~GAd~VmvgR~~l~ 225 (231)
T TIGR00736 189 FN-DKIIIGNNSIDDIESAKEMLKAGADFVSVARAILK 225 (231)
T ss_pred cC-CCcEEEECCcCCHHHHHHHHHhCCCeEEEcHhhcc
Confidence 72 49999999999999999999999999999998875
|
Members of this family show a distant relationship by PSI-BLAST to alpha/beta (TIM) barrel enzymes such as dihydroorotate dehydrogenase and glycolate oxidase. At least two closely related but well-separable families among the bacteria, the nifR3/yhdG family and the yjbN family, share a more distant relationship to this family of shorter, exclusively archaeal proteins. |
| >KOG2550 consensus IMP dehydrogenase/GMP reductase [Nucleotide transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.51 E-value=9.9e-14 Score=134.11 Aligned_cols=135 Identities=27% Similarity=0.378 Sum_probs=103.7
Q ss_pred HHHhhc-CCCEEEEecCCHHHHHHHHHcCCcEEEEcCCCCC----C--CCCccchHHHHHHHHHHhc-CCCcEEEecCCC
Q 017718 216 WLQTIT-KLPILVKGVLTAEDARIAVQAGAAGIIVSNHGAR----Q--LDYVPATIMALEEVVKATQ-GRIPVFLDGGVR 287 (367)
Q Consensus 216 ~l~~~~-~~Pv~vK~v~~~~~a~~~~~~G~d~i~vs~~gg~----~--~~~~~~~~~~l~~i~~~~~-~~~~via~GGI~ 287 (367)
|+|+.+ .+.|+...+.+.+.|+.++++|||++.|.-..|. | ..-|.+...++.++.+... -.+|||+||||+
T Consensus 285 ~iK~~yP~l~ViaGNVVT~~qa~nLI~aGaDgLrVGMGsGSiCiTqevma~GrpQ~TAVy~va~~A~q~gvpviADGGiq 364 (503)
T KOG2550|consen 285 YIKETYPDLQIIAGNVVTKEQAANLIAAGADGLRVGMGSGSICITQKVMACGRPQGTAVYKVAEFANQFGVPCIADGGIQ 364 (503)
T ss_pred HHHhhCCCceeeccceeeHHHHHHHHHccCceeEeccccCceeeeceeeeccCCcccchhhHHHHHHhcCCceeecCCcC
Confidence 888887 4778888889999999999999999999643332 2 2335555555555554332 279999999999
Q ss_pred CHHHHHHHHHcCCCEEEechHH--------------------HH------Hhh----------------ccCh-------
Q 017718 288 RGTDVFKALALGASGIFIGRPV--------------------VY------SLA----------------AEGE------- 318 (367)
Q Consensus 288 ~~~dv~kal~lGAd~V~ig~~~--------------------l~------~l~----------------~~G~------- 318 (367)
+..++.|||.+||++||+|..+ .+ ++. ++|.
T Consensus 365 ~~Ghi~KAl~lGAstVMmG~lLAgtTEapGeyf~~~g~rlKkyrGMGSl~AM~~~s~~rY~~e~dkvkiAQGVsg~v~dK 444 (503)
T KOG2550|consen 365 NVGHVVKALGLGASTVMMGGLLAGTTEAPGEYFFRDGVRLKKYRGMGSLDAMESSSQKRYFSEVDKVKIAQGVSGSVQDK 444 (503)
T ss_pred ccchhHhhhhcCchhheecceeeeeeccCcceeeecCeeehhccCcchHHHHhhhhhhccccccceEeeccCcEEEeccC
Confidence 9999999999999999999844 11 111 0121
Q ss_pred HHHHHHHHHHHHHHHHHHHHhCCCChhhhccc
Q 017718 319 KGVRRVLEMLREEFELAMALSGCRSLKEITRD 350 (367)
Q Consensus 319 ~~v~~~i~~l~~el~~~m~~~G~~si~~l~~~ 350 (367)
..+.+++..+...++..+...|++|+++++..
T Consensus 445 Gsv~kfipyl~~giqh~cqdiGa~sL~~l~~~ 476 (503)
T KOG2550|consen 445 GSVQKFIPYLLAGIQHSCQDIGARSLKELREM 476 (503)
T ss_pred cchhhhHHHHHHHHhhhhhhhhHHHHHHHHHH
Confidence 23889999999999999999999999999854
|
|
| >cd04730 NPD_like 2-Nitropropane dioxygenase (NPD), one of the nitroalkane oxidizing enzyme families, catalyzes oxidative denitrification of nitroalkanes to their corresponding carbonyl compounds and nitrites | Back alignment and domain information |
|---|
Probab=99.51 E-value=2.3e-12 Score=119.63 Aligned_cols=188 Identities=24% Similarity=0.298 Sum_probs=127.5
Q ss_pred ccceEeCcccchhccCChhhHHHHHHHHHcCCceeecCCCCCCHHH-------HHhhCCCceEEEEeecCCHHHHHHHHH
Q 017718 71 SMPIMIAPTAMQKMAHPEGEYATARAASAAGTIMTLSSWSTSSVEE-------VASTGPGIRFFQLYVYKDRNVVAQLVR 143 (367)
Q Consensus 71 ~~Pi~iAPm~~~~l~~~~~e~~~a~aa~~~G~~~~vs~~~~~~~e~-------i~~~~~~~~~~QLy~~~d~~~~~~~l~ 143 (367)
..|++.|||.+.+ +..+++++.+.|....++... .+.++ +.+....+..+++..........+.++
T Consensus 2 ~~pi~~a~m~g~~------~~~~~~~~~~~G~ig~i~~~~-~~~~~~~~~~~~i~~~~~~~~~v~~i~~~~~~~~~~~~~ 74 (236)
T cd04730 2 RYPIIQAPMAGVS------TPELAAAVSNAGGLGFIGAGY-LTPEALRAEIRKIRALTDKPFGVNLLVPSSNPDFEALLE 74 (236)
T ss_pred CCCEECCCCCCCC------CHHHHHHHHhCCCccccCCCC-CCHHHHHHHHHHHHHhcCCCeEEeEecCCCCcCHHHHHH
Confidence 4799999998764 678999999998644443221 12222 222221345577764321134557788
Q ss_pred HHHHcCCcEEEEecCCCCCCchhHHhhhhcCCCCccccccccccccCccccccchhhHHHhhhccCccccHHHHHhhcCC
Q 017718 144 RAERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLTLKNFQGLDLGKMDEANDSGLAAYVAGQIDRSLSWKWLQTITKL 223 (367)
Q Consensus 144 ra~~~G~~ai~itvd~p~~g~r~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~l~~~~~~ 223 (367)
.+.++|++.+.++-+.+. -..+++++ .++
T Consensus 75 ~~~~~g~d~v~l~~~~~~--------------------------------------------------~~~~~~~~-~~i 103 (236)
T cd04730 75 VALEEGVPVVSFSFGPPA--------------------------------------------------EVVERLKA-AGI 103 (236)
T ss_pred HHHhCCCCEEEEcCCCCH--------------------------------------------------HHHHHHHH-cCC
Confidence 899999999877433100 00113333 367
Q ss_pred CEEEEecCCHHHHHHHHHcCCcEEEEcCC--CCCCCCCccchHHHHHHHHHHhcCCCcEEEecCCCCHHHHHHHHHcCCC
Q 017718 224 PILVKGVLTAEDARIAVQAGAAGIIVSNH--GARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGAS 301 (367)
Q Consensus 224 Pv~vK~v~~~~~a~~~~~~G~d~i~vs~~--gg~~~~~~~~~~~~l~~i~~~~~~~~~via~GGI~~~~dv~kal~lGAd 301 (367)
+++++ +.+.+.++.+.+.|+|+|.+.+. ||+........++.+.++++.. ++||++.|||++++|+.+++.+|||
T Consensus 104 ~~i~~-v~~~~~~~~~~~~gad~i~~~~~~~~G~~~~~~~~~~~~i~~i~~~~--~~Pvi~~GGI~~~~~v~~~l~~Gad 180 (236)
T cd04730 104 KVIPT-VTSVEEARKAEAAGADALVAQGAEAGGHRGTFDIGTFALVPEVRDAV--DIPVIAAGGIADGRGIAAALALGAD 180 (236)
T ss_pred EEEEe-CCCHHHHHHHHHcCCCEEEEeCcCCCCCCCccccCHHHHHHHHHHHh--CCCEEEECCCCCHHHHHHHHHcCCc
Confidence 77765 45678899999999999998653 2222111134677888888766 7999999999999999999999999
Q ss_pred EEEechHHHHHhhccChH
Q 017718 302 GIFIGRPVVYSLAAEGEK 319 (367)
Q Consensus 302 ~V~ig~~~l~~l~~~G~~ 319 (367)
+|++||.++....+.+..
T Consensus 181 gV~vgS~l~~~~e~~~~~ 198 (236)
T cd04730 181 GVQMGTRFLATEESGASP 198 (236)
T ss_pred EEEEchhhhcCcccCCCH
Confidence 999999999876554444
|
NDP is a member of the NAD(P)H-dependent flavin oxidoreductase family that reduce a range of alternative electron acceptors. Most use FAD/FMN as a cofactor and NAD(P)H as electron donor. Some contain 4Fe-4S cluster to transfer electron from FAD to FMN. |
| >cd04743 NPD_PKS 2-Nitropropane dioxygenase (NPD)-like domain, associated with polyketide synthases (PKS) | Back alignment and domain information |
|---|
Probab=99.43 E-value=7.6e-12 Score=120.63 Aligned_cols=182 Identities=16% Similarity=0.201 Sum_probs=124.6
Q ss_pred ccceEeCcccchhccCChhh-HHHHHHHHHcCCceeecCCCCCCHHHHH-------hh-CCCceEEEEeecCCHHHHHHH
Q 017718 71 SMPIMIAPTAMQKMAHPEGE-YATARAASAAGTIMTLSSWSTSSVEEVA-------ST-GPGIRFFQLYVYKDRNVVAQL 141 (367)
Q Consensus 71 ~~Pi~iAPm~~~~l~~~~~e-~~~a~aa~~~G~~~~vs~~~~~~~e~i~-------~~-~~~~~~~QLy~~~d~~~~~~~ 141 (367)
..||+-+||++.+ + ..|+.+..++|..-+++.. ..+.|++. +. ...|+.+.|....+.....+.
T Consensus 2 ~yPIiqgpM~~vs------~~~~LaaAVS~AGgLG~la~~-~~~~e~l~~~i~~~~~l~tdkPfGVnl~~~~~~~~~~~~ 74 (320)
T cd04743 2 RYPIVQGPMTRVS------DVAEFAVAVAEGGGLPFIALA-LMRGEQVKALLEETAELLGDKPWGVGILGFVDTELRAAQ 74 (320)
T ss_pred CCCEECCCcCCCC------CcHHHHHHHHhCCccccCCCC-CCCHHHHHHHHHHHHHhccCCCeEEEEeccCCCcchHHH
Confidence 5799999998754 3 5899999999987666532 23444322 21 225666665322222334456
Q ss_pred HHHHHHcCCcEEEEecCCCCCCchhHHhhhhcCCCCccccccccccccCccccccchhhHHHhhhccCccccHHHHHhhc
Q 017718 142 VRRAERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLTLKNFQGLDLGKMDEANDSGLAAYVAGQIDRSLSWKWLQTIT 221 (367)
Q Consensus 142 l~ra~~~G~~ai~itvd~p~~g~r~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~l~~~~ 221 (367)
++.+.+.+.+.+.++.+.|. ..+.+++ .
T Consensus 75 l~vi~e~~v~~V~~~~G~P~---------------------------------------------------~~~~lk~-~ 102 (320)
T cd04743 75 LAVVRAIKPTFALIAGGRPD---------------------------------------------------QARALEA-I 102 (320)
T ss_pred HHHHHhcCCcEEEEcCCChH---------------------------------------------------HHHHHHH-C
Confidence 67777777776665433220 0124443 4
Q ss_pred CCCEEEEecCCHHHHHHHHHcCCcEEEEcCC--CCCCCCCccchHHHHHHHHHHhc--------CCCcEEEecCCCCHHH
Q 017718 222 KLPILVKGVLTAEDARIAVQAGAAGIIVSNH--GARQLDYVPATIMALEEVVKATQ--------GRIPVFLDGGVRRGTD 291 (367)
Q Consensus 222 ~~Pv~vK~v~~~~~a~~~~~~G~d~i~vs~~--gg~~~~~~~~~~~~l~~i~~~~~--------~~~~via~GGI~~~~d 291 (367)
+++++. .+.+++.|+++.++|+|+|++.|+ ||+. +..+++.+++++.+.+. .++|||+.|||.++..
T Consensus 103 Gi~v~~-~v~s~~~A~~a~~~GaD~vVaqG~EAGGH~--G~~~t~~L~~~v~~~l~~~~~~~~~~~iPViAAGGI~dgr~ 179 (320)
T cd04743 103 GISTYL-HVPSPGLLKQFLENGARKFIFEGRECGGHV--GPRSSFVLWESAIDALLAANGPDKAGKIHLLFAGGIHDERS 179 (320)
T ss_pred CCEEEE-EeCCHHHHHHHHHcCCCEEEEecCcCcCCC--CCCCchhhHHHHHHHHHHhhcccccCCccEEEEcCCCCHHH
Confidence 777764 468999999999999999999885 6653 23455556666655541 2699999999999999
Q ss_pred HHHHHHcCC--------CEEEechHHHHHhh
Q 017718 292 VFKALALGA--------SGIFIGRPVVYSLA 314 (367)
Q Consensus 292 v~kal~lGA--------d~V~ig~~~l~~l~ 314 (367)
+..++++|| ++|++||.|+..-.
T Consensus 180 ~aaalaLGA~~~~~Ga~~GV~mGTrFl~t~E 210 (320)
T cd04743 180 AAMVSALAAPLAERGAKVGVLMGTAYLFTEE 210 (320)
T ss_pred HHHHHHcCCcccccccccEEEEccHHhcchh
Confidence 999999999 89999999988543
|
NPD is part of the nitroalkaneoxidizing enzyme family, that catalyzes oxidative denitrification of nitroalkanes to their corresponding carbonyl compounds and nitrites. NDPs are members of the NAD(P)H-dependent flavin oxidoreductase family that reduce a range of alternative electron acceptors. Most use FAD/FMN as a cofactor and NAD(P)H as electron donor. Some contain 4Fe-4S cluster to transfer electron from FAD to FMN. |
| >COG2070 Dioxygenases related to 2-nitropropane dioxygenase [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.42 E-value=3.5e-12 Score=124.51 Aligned_cols=97 Identities=32% Similarity=0.478 Sum_probs=80.5
Q ss_pred HHHHhhcCCCEEEEecCCHHHHHHHHHcCCcEEEEcCC--CCCCC--CCccchHHHHHHHHHHhcCC-CcEEEecCCCCH
Q 017718 215 KWLQTITKLPILVKGVLTAEDARIAVQAGAAGIIVSNH--GARQL--DYVPATIMALEEVVKATQGR-IPVFLDGGVRRG 289 (367)
Q Consensus 215 ~~l~~~~~~Pv~vK~v~~~~~a~~~~~~G~d~i~vs~~--gg~~~--~~~~~~~~~l~~i~~~~~~~-~~via~GGI~~~ 289 (367)
+.++. .+.+++.+ +.+...|++++++|+|+|++.+. ||+.- +..+++..+++++++++ + +|||+.|||.++
T Consensus 121 ~~~~~-~g~~v~~~-v~~~~~A~~~~~~G~d~vI~~g~eAGGH~g~~~~~~~t~~Lv~ev~~~~--~~iPViAAGGI~dg 196 (336)
T COG2070 121 ARLKA-AGIKVIHS-VITVREALKAERAGADAVIAQGAEAGGHRGGVDLEVSTFALVPEVVDAV--DGIPVIAAGGIADG 196 (336)
T ss_pred HHHHH-cCCeEEEE-eCCHHHHHHHHhCCCCEEEecCCcCCCcCCCCCCCccHHHHHHHHHHHh--cCCCEEEecCccCh
Confidence 35554 56677654 57899999999999999999764 55532 34677899999999998 5 999999999999
Q ss_pred HHHHHHHHcCCCEEEechHHHHHhhc
Q 017718 290 TDVFKALALGASGIFIGRPVVYSLAA 315 (367)
Q Consensus 290 ~dv~kal~lGAd~V~ig~~~l~~l~~ 315 (367)
.++..+|++||++|++||.|+..-.|
T Consensus 197 ~~i~AAlalGA~gVq~GT~Fl~t~Ea 222 (336)
T COG2070 197 RGIAAALALGADGVQMGTRFLATKEA 222 (336)
T ss_pred HHHHHHHHhccHHHHhhhhhhccccc
Confidence 99999999999999999999875443
|
|
| >PRK13523 NADPH dehydrogenase NamA; Provisional | Back alignment and domain information |
|---|
Probab=99.29 E-value=2e-10 Score=112.50 Aligned_cols=222 Identities=19% Similarity=0.171 Sum_probs=133.7
Q ss_pred ceeEcCeeeccceEeCcccchhcc----CC-hhhHHHHHHHHHcCCceeecCCCCC--------------CHH------H
Q 017718 62 NTTVLGFKISMPIMIAPTAMQKMA----HP-EGEYATARAASAAGTIMTLSSWSTS--------------SVE------E 116 (367)
Q Consensus 62 st~i~g~~l~~Pi~iAPm~~~~l~----~~-~~e~~~a~aa~~~G~~~~vs~~~~~--------------~~e------~ 116 (367)
..+|.+.++++-|+.+||+...-. .+ +....+-+.-++-|+.+++++.... +.+ +
T Consensus 6 P~~ig~~~lkNRiv~apm~~~~~~~~~G~~t~~~~~~y~~rA~gG~GlIi~~~~~v~~~~~~~~~~~~~~~d~~i~~~r~ 85 (337)
T PRK13523 6 PYTIKDVTLKNRIVMSPMCMYSSENKDGKVTNFHLIHYGTRAAGQVGLVIVEATAVLPEGRISDKDLGIWDDEHIEGLHK 85 (337)
T ss_pred CeeECCEeeecccEecccccccccCCCCCCCHHHHHHHHHHHcCCCeEEEECCeEECccccCCCCceecCCHHHHHHHHH
Confidence 477889999999999999532211 11 2234566666667888876543110 111 1
Q ss_pred HHhh---CCCceEEEEeecCC---------------------------HH-------HHHHHHHHHHHcCCcEEEEecCC
Q 017718 117 VAST---GPGIRFFQLYVYKD---------------------------RN-------VVAQLVRRAERAGFKAIALTVDT 159 (367)
Q Consensus 117 i~~~---~~~~~~~QLy~~~d---------------------------~~-------~~~~~l~ra~~~G~~ai~itvd~ 159 (367)
+.+. .....++||+-... .+ ...+.+++|+++||+++.||...
T Consensus 86 l~d~vh~~G~~i~~QL~H~G~~~~~~~~~~~ps~~~~~~~~~~p~~mt~eeI~~ii~~f~~aA~~a~~aGfDgVeih~ah 165 (337)
T PRK13523 86 LVTFIHDHGAKAAIQLAHAGRKAELEGDIVAPSAIPFDEKSKTPVEMTKEQIKETVLAFKQAAVRAKEAGFDVIEIHGAH 165 (337)
T ss_pred HHHHHHhcCCEEEEEccCCCCCCCCCCCccCCCCCCCCCCCCCCCcCCHHHHHHHHHHHHHHHHHHHHcCCCEEEEcccc
Confidence 2211 22467888853111 11 12334567788999999999873
Q ss_pred CCCCchhHHhhhhcCCCCccccccccccccCccccccchhhHHHhhhccCccc--c-HHHHHhhcCCCEEEEecC-----
Q 017718 160 PRLGRREADIKNRFTLPPFLTLKNFQGLDLGKMDEANDSGLAAYVAGQIDRSL--S-WKWLQTITKLPILVKGVL----- 231 (367)
Q Consensus 160 p~~g~r~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~--~-~~~l~~~~~~Pv~vK~v~----- 231 (367)
-. +-+.|--|. .+.++ .+-.++ +. . ...| . .+.+|+.++.||.+|+..
T Consensus 166 Gy-------Ll~qFlSp~-~N~Rt---------D~yGGs-le---n---R~Rf~~eii~~ir~~~~~~v~vRis~~d~~~ 221 (337)
T PRK13523 166 GY-------LINEFLSPL-SNKRT---------DEYGGS-PE---N---RYRFLREIIDAVKEVWDGPLFVRISASDYHP 221 (337)
T ss_pred ch-------HHHHhcCCc-cCCcC---------CCCCCC-HH---H---HHHHHHHHHHHHHHhcCCCeEEEecccccCC
Confidence 11 112221010 00000 000111 10 0 0112 1 237888888899999973
Q ss_pred ---CHHH----HHHHHHcCCcEEEEcCCCCCCC----CC-ccchHHHHHHHHHHhcCCCcEEEecCCCCHHHHHHHHHcC
Q 017718 232 ---TAED----ARIAVQAGAAGIIVSNHGARQL----DY-VPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALG 299 (367)
Q Consensus 232 ---~~~~----a~~~~~~G~d~i~vs~~gg~~~----~~-~~~~~~~l~~i~~~~~~~~~via~GGI~~~~dv~kal~lG 299 (367)
+.++ ++.+.++|+|.|.|+. |+.. .. ....++...++++.+ ++||+++|+|++++++.++|+-|
T Consensus 222 ~G~~~~e~~~i~~~l~~~gvD~i~vs~--g~~~~~~~~~~~~~~~~~~~~ik~~~--~ipVi~~G~i~~~~~a~~~l~~g 297 (337)
T PRK13523 222 GGLTVQDYVQYAKWMKEQGVDLIDVSS--GAVVPARIDVYPGYQVPFAEHIREHA--NIATGAVGLITSGAQAEEILQNN 297 (337)
T ss_pred CCCCHHHHHHHHHHHHHcCCCEEEeCC--CCCCCCCCCCCccccHHHHHHHHhhc--CCcEEEeCCCCCHHHHHHHHHcC
Confidence 4443 6788899999999964 3311 11 111456667777766 79999999999999999999987
Q ss_pred -CCEEEechHHHH
Q 017718 300 -ASGIFIGRPVVY 311 (367)
Q Consensus 300 -Ad~V~ig~~~l~ 311 (367)
||+|++||+++-
T Consensus 298 ~~D~V~~gR~~ia 310 (337)
T PRK13523 298 RADLIFIGRELLR 310 (337)
T ss_pred CCChHHhhHHHHh
Confidence 999999999985
|
|
| >cd04742 NPD_FabD 2-Nitropropane dioxygenase (NPD)-like domain, associated with the (acyl-carrier-protein) S-malonyltransferase FabD | Back alignment and domain information |
|---|
Probab=99.28 E-value=3.6e-10 Score=112.62 Aligned_cols=215 Identities=19% Similarity=0.165 Sum_probs=126.1
Q ss_pred eccceEeCccc-chhccCChhhHHHHHHHHHcCCceeecCCCCCCHHHHH-------hh-C-CCceEEEEeec-CCHHHH
Q 017718 70 ISMPIMIAPTA-MQKMAHPEGEYATARAASAAGTIMTLSSWSTSSVEEVA-------ST-G-PGIRFFQLYVY-KDRNVV 138 (367)
Q Consensus 70 l~~Pi~iAPm~-~~~l~~~~~e~~~a~aa~~~G~~~~vs~~~~~~~e~i~-------~~-~-~~~~~~QLy~~-~d~~~~ 138 (367)
+..|++.+||+ +.+ ...|+.+..++|..-.++... .+.+++. +. . ..|+.+.|+.. .+++..
T Consensus 12 iryPii~gpMa~Gis------s~eLVaAvs~AGgLG~lgag~-l~~e~l~~~I~~ir~~lt~~~PfGVNL~~~~~~~~~e 84 (418)
T cd04742 12 LRYAYVAGAMARGIA------SAELVVAMGKAGMLGFFGAGG-LPLDEVEQAIERIQAALGNGEPYGVNLIHSPDEPELE 84 (418)
T ss_pred CCccEECCcccCCCC------CHHHHHHHHhCCCeeeecCCC-CCHHHHHHHHHHHHHhccCCCCeEEeeecCCCCchhH
Confidence 67899999997 443 468999999999888887543 3455443 21 2 35788888753 345555
Q ss_pred HHHHHHHHHcCCcEEEEe--cCC-CCCCchhHHhhhhcCC-CCc-cccccccccccCcccc-ccchhhHHHhhhccCccc
Q 017718 139 AQLVRRAERAGFKAIALT--VDT-PRLGRREADIKNRFTL-PPF-LTLKNFQGLDLGKMDE-ANDSGLAAYVAGQIDRSL 212 (367)
Q Consensus 139 ~~~l~ra~~~G~~ai~it--vd~-p~~g~r~~~~~~~~~~-p~~-~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~d~~~ 212 (367)
.+.++.+.+.|.+.+... .+. |.. .+.++ .|+.. +.+ +..++ ..+.+ +... ..+..... .+.-
T Consensus 85 ~~~v~l~le~gV~~ve~sa~~~~~p~~-~~~r~--~G~~~~~~g~~~~~~------~ViakVsr~e-vAs~~f~p-pp~~ 153 (418)
T cd04742 85 EGLVDLFLRHGVRVVEASAFMQLTPAL-VRYRA--KGLRRDADGRVQIAN------RIIAKVSRPE-VAEAFMSP-APER 153 (418)
T ss_pred HHHHHHHHHcCCCEEEeccccCCCcch-hhHHh--cCCcccccccccccc------eEEEecCChh-hhhhhcCC-CCHH
Confidence 667888888998876543 111 111 11111 01100 000 00000 00000 0000 11111110 0111
Q ss_pred cHHHHHhhcCCCEEEEecCCHHHHHHHHHcC-CcEEEEcC-CCCCCCCCccchHHHHHHHHHH---h------cCCCcEE
Q 017718 213 SWKWLQTITKLPILVKGVLTAEDARIAVQAG-AAGIIVSN-HGARQLDYVPATIMALEEVVKA---T------QGRIPVF 281 (367)
Q Consensus 213 ~~~~l~~~~~~Pv~vK~v~~~~~a~~~~~~G-~d~i~vs~-~gg~~~~~~~~~~~~l~~i~~~---~------~~~~~vi 281 (367)
..+.+++. ++.+.++|+.+.+.| +|.|++.. .||+. +..++..+++.+.+. + ..++||+
T Consensus 154 ~v~~L~~~--------G~it~~eA~~A~~~g~aD~Ivvq~EAGGH~--g~~~~~~Llp~v~~l~d~v~~~~~~~~~ipVi 223 (418)
T cd04742 154 ILKKLLAE--------GKITEEQAELARRVPVADDITVEADSGGHT--DNRPLSVLLPTIIRLRDELAARYGYRRPIRVG 223 (418)
T ss_pred HHHHHHHc--------CCCCHHHHHHHHhCCCCCEEEEcccCCCCC--CCccHHhHHHHHHHHHHHHhhccccCCCceEE
Confidence 22344332 223899999999999 59999974 36654 223455666666542 2 1259999
Q ss_pred EecCCCCHHHHHHHHHcCCCEEEechHHHHH
Q 017718 282 LDGGVRRGTDVFKALALGASGIFIGRPVVYS 312 (367)
Q Consensus 282 a~GGI~~~~dv~kal~lGAd~V~ig~~~l~~ 312 (367)
+.|||.|+.++..++++||++|++||.|+-.
T Consensus 224 AAGGI~tg~~vaAA~alGAd~V~~GT~flat 254 (418)
T cd04742 224 AAGGIGTPEAAAAAFALGADFIVTGSINQCT 254 (418)
T ss_pred EECCCCCHHHHHHHHHcCCcEEeeccHHHhC
Confidence 9999999999999999999999999999764
|
NPD is part of the nitroalkaneoxidizing enzyme family, that catalyzes oxidative denitrification of nitroalkanes to their corresponding carbonyl compounds and nitrites. NDPs are members of the NAD(P)H-dependent flavin oxidoreductase family that reduce a range of alternative electron acceptors. Most use FAD/FMN as a cofactor and NAD(P)H as electron donor. Some contain 4Fe-4S cluster to transfer electron from FAD to FMN. |
| >KOG2333 consensus Uncharacterized conserved protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.27 E-value=1.2e-10 Score=114.92 Aligned_cols=235 Identities=17% Similarity=0.211 Sum_probs=150.7
Q ss_pred eccceEeCcccchhccCChhhHHHHHHHHHcCCceeecCCCCCC-------HHH-HHhhCC--CceEEEEeecCCHHHHH
Q 017718 70 ISMPIMIAPTAMQKMAHPEGEYATARAASAAGTIMTLSSWSTSS-------VEE-VASTGP--GIRFFQLYVYKDRNVVA 139 (367)
Q Consensus 70 l~~Pi~iAPm~~~~l~~~~~e~~~a~aa~~~G~~~~vs~~~~~~-------~e~-i~~~~~--~~~~~QLy~~~d~~~~~ 139 (367)
+.--.++||.+-. ||++|+|.|.++|...+.|+|+-+. -|- +...++ ..+.+||- +..++.+.
T Consensus 263 ~r~K~~LaPLTTv------GNLPFRRlCk~lGADvTcgEMA~~tpLlqG~~sEWALlkRH~sEdiFGVQla-g~~pdt~~ 335 (614)
T KOG2333|consen 263 FRDKKYLAPLTTV------GNLPFRRLCKKLGADVTCGEMAMATPLLQGTASEWALLKRHQSEDIFGVQLA-GSKPDTAA 335 (614)
T ss_pred cccceeecccccc------CCccHHHHHHHhCCccchhHHHHHHHHhcccchhhhhhhhcCcccceeeEec-cCChHHHH
Confidence 4457889997544 4889999999999999999986431 111 222222 57889997 55666665
Q ss_pred HHHHHH-HHcCCcEEEEecCCCCCCchhHHhhhhcCCCCccccccccccccCccccccchhhHHHhhhccCcccc-HHHH
Q 017718 140 QLVRRA-ERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLTLKNFQGLDLGKMDEANDSGLAAYVAGQIDRSLS-WKWL 217 (367)
Q Consensus 140 ~~l~ra-~~~G~~ai~itvd~p~~g~r~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~-~~~l 217 (367)
..++.+ +....+.|+||++||.. +.. + .+.+++ ++.-+..-+. ....
T Consensus 336 kaaq~i~e~~~VDFIDlN~GCPID------lvy----------~-----------qG~GsA----Ll~rp~rl~~~l~~m 384 (614)
T KOG2333|consen 336 KAAQVIAETCDVDFIDLNMGCPID------LVY----------R-----------QGGGSA----LLNRPARLIRILRAM 384 (614)
T ss_pred HHHHHHHhhcceeeeeccCCCChh------eee----------c-----------cCCcch----hhcCcHHHHHHHHHH
Confidence 555544 34679999999999973 210 0 112222 2211000001 1122
Q ss_pred Hhhc-CCCEEEEecCCH--------HHHHHHH-HcCCcEEEEcCCCCCCCCCccchHHHHHHHHHHhcCCCcEEEecCCC
Q 017718 218 QTIT-KLPILVKGVLTA--------EDARIAV-QAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVR 287 (367)
Q Consensus 218 ~~~~-~~Pv~vK~v~~~--------~~a~~~~-~~G~d~i~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~~~via~GGI~ 287 (367)
.... .+||.||+.+.. +-...+. +-|+++|++++...-|-++..+.|+.+.++.+.+...+|+|++|.|.
T Consensus 385 ~~vs~~iPiTVKiRTG~keg~~~a~~Li~~i~newg~savTlHGRSRqQRYTK~AnWdYi~e~a~~ak~~l~liGNGDi~ 464 (614)
T KOG2333|consen 385 NAVSGDIPITVKIRTGTKEGHPVAHELIPRIVNEWGASAVTLHGRSRQQRYTKSANWDYIEECADKAKSALPLIGNGDIL 464 (614)
T ss_pred HHhccCCCeEEEEecccccCchhHHHHHHHHhhccCcceEEecCchhhhhhhcccChHHHHHHHHhcccCceeEecCccc
Confidence 2333 469999998421 2233344 89999999944333466788889999999998886569999999999
Q ss_pred CHHHHHHHHHcC--CCEEEech-----HHHHHhhccCh---HHHHHHHHHHHHHHHHHHHHhCCC
Q 017718 288 RGTDVFKALALG--ASGIFIGR-----PVVYSLAAEGE---KGVRRVLEMLREEFELAMALSGCR 342 (367)
Q Consensus 288 ~~~dv~kal~lG--Ad~V~ig~-----~~l~~l~~~G~---~~v~~~i~~l~~el~~~m~~~G~~ 342 (367)
|.+|-.+.+..+ -+.|||+| ||||...-+-. ..-.+-++.|++=...-|+..|..
T Consensus 465 S~eDw~~~~~~~p~v~svMIaRGALIKPWIFtEIkeqq~wD~sSteRldiL~df~nyGLeHWGSD 529 (614)
T KOG2333|consen 465 SWEDWYERLNQNPNVDSVMIARGALIKPWIFTEIKEQQHWDISSTERLDILKDFCNYGLEHWGSD 529 (614)
T ss_pred cHHHHHHHhhcCCCcceEEeeccccccchHhhhhhhhhcCCccchHHHHHHHHHHhhhhhhcCCc
Confidence 999999998876 89999999 88886432100 000123444555555555555543
|
|
| >cd04722 TIM_phosphate_binding TIM barrel proteins share a structurally conserved phosphate binding motif and in general share an eight beta/alpha closed barrel structure | Back alignment and domain information |
|---|
Probab=99.26 E-value=4.3e-10 Score=99.75 Aligned_cols=184 Identities=24% Similarity=0.248 Sum_probs=118.3
Q ss_pred eEeCcccchhccCChhhHHHHHHHHHcCCceeec-CCCC-------CC---HHHHHhhCCCceEEEEeecCCHHHHHHHH
Q 017718 74 IMIAPTAMQKMAHPEGEYATARAASAAGTIMTLS-SWST-------SS---VEEVASTGPGIRFFQLYVYKDRNVVAQLV 142 (367)
Q Consensus 74 i~iAPm~~~~l~~~~~e~~~a~aa~~~G~~~~vs-~~~~-------~~---~e~i~~~~~~~~~~QLy~~~d~~~~~~~l 142 (367)
|++++|..+.. +.....++.+.+.|+.++.. +... .. ++.+......+..+|++.....+.....+
T Consensus 1 ~~~~~~~~~~~---~~~~~~~~~~~~~G~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a 77 (200)
T cd04722 1 VILALLAGGPS---GDPVELAKAAAEAGADAIIVGTRSSDPEEAETDDKEVLKEVAAETDLPLGVQLAINDAAAAVDIAA 77 (200)
T ss_pred CeeeccccCch---HHHHHHHHHHHcCCCCEEEEeeEEECcccCCCccccHHHHHHhhcCCcEEEEEccCCchhhhhHHH
Confidence 45677765421 23467899999998766532 2211 11 33333334467899998654444444446
Q ss_pred HHHHHcCCcEEEEecCCCCCCchhHHhhhhcCCCCccccccccccccCccccccchhhHHHhhhccCccc-cHHHHHhhc
Q 017718 143 RRAERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLTLKNFQGLDLGKMDEANDSGLAAYVAGQIDRSL-SWKWLQTIT 221 (367)
Q Consensus 143 ~ra~~~G~~ai~itvd~p~~g~r~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~-~~~~l~~~~ 221 (367)
++++++|++.+.++..++.. | + ... ..+++++.+
T Consensus 78 ~~~~~~g~d~v~l~~~~~~~-------------~-------------------------~-------~~~~~~~~i~~~~ 112 (200)
T cd04722 78 AAARAAGADGVEIHGAVGYL-------------A-------------------------R-------EDLELIRELREAV 112 (200)
T ss_pred HHHHHcCCCEEEEeccCCcH-------------H-------------------------H-------HHHHHHHHHHHhc
Confidence 78899999999998876531 0 0 000 123667766
Q ss_pred -CCCEEEEecCCHHHHHH-HHHcCCcEEEEcCCCCCCCCCccc--hHHHHHHHHHHhcCCCcEEEecCCCCHHHHHHHHH
Q 017718 222 -KLPILVKGVLTAEDARI-AVQAGAAGIIVSNHGARQLDYVPA--TIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALA 297 (367)
Q Consensus 222 -~~Pv~vK~v~~~~~a~~-~~~~G~d~i~vs~~gg~~~~~~~~--~~~~l~~i~~~~~~~~~via~GGI~~~~dv~kal~ 297 (367)
++|+++|.....+.... +.+.|+|+|.++++.+.+...... ....+..+.... ++||+++|||.+++++.+++.
T Consensus 113 ~~~~v~~~~~~~~~~~~~~~~~~g~d~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~pi~~~GGi~~~~~~~~~~~ 190 (200)
T cd04722 113 PDVKVVVKLSPTGELAAAAAEEAGVDEVGLGNGGGGGGGRDAVPIADLLLILAKRGS--KVPVIAGGGINDPEDAAEALA 190 (200)
T ss_pred CCceEEEEECCCCccchhhHHHcCCCEEEEcCCcCCCCCccCchhHHHHHHHHHhcC--CCCEEEECCCCCHHHHHHHHH
Confidence 79999998754332222 688999999998764433222221 123344443333 799999999999999999999
Q ss_pred cCCCEEEech
Q 017718 298 LGASGIFIGR 307 (367)
Q Consensus 298 lGAd~V~ig~ 307 (367)
+|||+|++||
T Consensus 191 ~Gad~v~vgs 200 (200)
T cd04722 191 LGADGVIVGS 200 (200)
T ss_pred hCCCEEEecC
Confidence 9999999996
|
Specific for this family is the conserved phosphate binding site at the edges of strands 7 and 8. The phosphate comes either from the substrate, as in the case of inosine monophosphate dehydrogenase (IMPDH), or from ribulose-5-phosphate 3-epimerase (RPE) or from cofactors, like FMN. |
| >TIGR02814 pfaD_fam PfaD family protein | Back alignment and domain information |
|---|
Probab=99.23 E-value=1.3e-09 Score=109.23 Aligned_cols=221 Identities=19% Similarity=0.190 Sum_probs=127.7
Q ss_pred eEcCeeeccceEeCccc-chhccCChhhHHHHHHHHHcCCceeecCCCCCCHHHHH-------hhCC-Cc-eEEEEeecC
Q 017718 64 TVLGFKISMPIMIAPTA-MQKMAHPEGEYATARAASAAGTIMTLSSWSTSSVEEVA-------STGP-GI-RFFQLYVYK 133 (367)
Q Consensus 64 ~i~g~~l~~Pi~iAPm~-~~~l~~~~~e~~~a~aa~~~G~~~~vs~~~~~~~e~i~-------~~~~-~~-~~~QLy~~~ 133 (367)
+++| +..|++.+||+ +.+ ...|+.+..++|....++... .+++++. +..+ ++ +.+.|+...
T Consensus 13 ~~lg--iryPiiqgpMa~GiS------s~eLVaAVs~AGgLG~lgag~-l~~e~l~~~I~~ir~~~~~~p~fGVNL~~~~ 83 (444)
T TIGR02814 13 EDYG--VRYAYVAGAMANGIA------SAELVIAMGRAGILGFFGAGG-LPLEEVEQAIHRIQQALPGGPAYGVNLIHSP 83 (444)
T ss_pred HHhC--CCCcEECccccCCCC------CHHHHHHHHhCCceeeeCCCC-CCHHHHHHHHHHHHHhcCCCCceEEEecccC
Confidence 3444 67899999997 332 568999999999888887543 4555543 2222 35 888887543
Q ss_pred -CHHHHHHHHHHHHHcCCcEEEEec--C-CCCCCchhHHhhhhcCCCC--ccccccccccccCccccccchhhHHHhhhc
Q 017718 134 -DRNVVAQLVRRAERAGFKAIALTV--D-TPRLGRREADIKNRFTLPP--FLTLKNFQGLDLGKMDEANDSGLAAYVAGQ 207 (367)
Q Consensus 134 -d~~~~~~~l~ra~~~G~~ai~itv--d-~p~~g~r~~~~~~~~~~p~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 207 (367)
+++...++++.+.+.|.+.+...- + +|.. .+.+. .|+.... .+..++ ..+.+-......+....
T Consensus 84 ~~~~~e~~~v~l~l~~~V~~veasa~~~~~p~~-v~~r~--~G~~~~~~g~~~~~~------~ViakVsr~~vAs~f~~- 153 (444)
T TIGR02814 84 SDPALEWGLVDLLLRHGVRIVEASAFMQLTPAL-VRYRA--KGLHRDADGRVVIRN------RLIAKVSRPEVAEAFMS- 153 (444)
T ss_pred CCcccHHHHHHHHHHcCCCEEEeccccCCCcch-hhhhh--ccccccccccccccc------eEEEecCCHHHHHHhcC-
Confidence 344444567777788888765431 1 1211 11100 0110000 000000 00000000001111110
Q ss_pred cCccccHHHHHhhcCCCEEEEecCCHHHHHHHHHcC-CcEEEEcC-CCCCCCCCccchHHHHHHHHH---Hh------cC
Q 017718 208 IDRSLSWKWLQTITKLPILVKGVLTAEDARIAVQAG-AAGIIVSN-HGARQLDYVPATIMALEEVVK---AT------QG 276 (367)
Q Consensus 208 ~d~~~~~~~l~~~~~~Pv~vK~v~~~~~a~~~~~~G-~d~i~vs~-~gg~~~~~~~~~~~~l~~i~~---~~------~~ 276 (367)
+.+.-..+.|++ .++.+.++|+.+.+.| +|.|++.. .||+. +..++..+++++.+ .+ ..
T Consensus 154 p~p~~~v~~L~~--------~G~it~eEA~~a~~~g~aD~Ivve~EAGGHt--g~~~~~~Llp~i~~lrd~v~~~~~y~~ 223 (444)
T TIGR02814 154 PAPAHILQKLLA--------EGRITREEAELARRVPVADDICVEADSGGHT--DNRPLVVLLPAIIRLRDTLMRRYGYRK 223 (444)
T ss_pred CCcHHHHHHHHH--------cCCCCHHHHHHHHhCCCCcEEEEeccCCCCC--CCCcHHHHHHHHHHHHHHHhhcccCCC
Confidence 011112233332 2234999999999999 49888863 36654 23456677777753 33 12
Q ss_pred CCcEEEecCCCCHHHHHHHHHcCCCEEEechHHHHHh
Q 017718 277 RIPVFLDGGVRRGTDVFKALALGASGIFIGRPVVYSL 313 (367)
Q Consensus 277 ~~~via~GGI~~~~dv~kal~lGAd~V~ig~~~l~~l 313 (367)
++||++.|||.|+.++..++++|||+|++||.|+-..
T Consensus 224 ~VpViAAGGI~t~~~vaAAlaLGAdgV~~GT~flat~ 260 (444)
T TIGR02814 224 PIRVGAAGGIGTPEAAAAAFMLGADFIVTGSVNQCTV 260 (444)
T ss_pred CceEEEeCCCCCHHHHHHHHHcCCcEEEeccHHHhCc
Confidence 6899999999999999999999999999999998643
|
The protein PfaD is part of four gene locus, similar to polyketide biosynthesis systems, responsible for omega-3 polyunsaturated fatty acid biosynthesis in several high pressure and/or cold-adapted bacteria. Several other members of the seed alignment for this model are found in loci presumed to act in polyketide biosyntheses per se. |
| >cd02803 OYE_like_FMN_family Old yellow enzyme (OYE)-like FMN binding domain | Back alignment and domain information |
|---|
Probab=99.21 E-value=5.9e-10 Score=108.63 Aligned_cols=95 Identities=24% Similarity=0.253 Sum_probs=73.4
Q ss_pred HHHHhhc--CCCEEEEecC--------CHHH----HHHHHHcCCcEEEEcCCCCCCCCC--------ccchHHHHHHHHH
Q 017718 215 KWLQTIT--KLPILVKGVL--------TAED----ARIAVQAGAAGIIVSNHGARQLDY--------VPATIMALEEVVK 272 (367)
Q Consensus 215 ~~l~~~~--~~Pv~vK~v~--------~~~~----a~~~~~~G~d~i~vs~~gg~~~~~--------~~~~~~~l~~i~~ 272 (367)
+.+|+.+ ++||.+|... +.++ ++.+.++|+|+|.+++....+... ....++.+..+++
T Consensus 199 ~avr~~~g~d~~i~vris~~~~~~~g~~~~e~~~la~~l~~~G~d~i~vs~g~~~~~~~~~~~~~~~~~~~~~~~~~ir~ 278 (327)
T cd02803 199 AAVREAVGPDFPVGVRLSADDFVPGGLTLEEAIEIAKALEEAGVDALHVSGGSYESPPPIIPPPYVPEGYFLELAEKIKK 278 (327)
T ss_pred HHHHHHcCCCceEEEEechhccCCCCCCHHHHHHHHHHHHHcCCCEEEeCCCCCcccccccCCCCCCcchhHHHHHHHHH
Confidence 3788877 6899999873 2333 678899999999997633221111 1234566777877
Q ss_pred HhcCCCcEEEecCCCCHHHHHHHHHc-CCCEEEechHHHH
Q 017718 273 ATQGRIPVFLDGGVRRGTDVFKALAL-GASGIFIGRPVVY 311 (367)
Q Consensus 273 ~~~~~~~via~GGI~~~~dv~kal~l-GAd~V~ig~~~l~ 311 (367)
.+ ++||+++|||++++++.+++.. |||+|++||+++.
T Consensus 279 ~~--~iPVi~~Ggi~t~~~a~~~l~~g~aD~V~igR~~la 316 (327)
T cd02803 279 AV--KIPVIAVGGIRDPEVAEEILAEGKADLVALGRALLA 316 (327)
T ss_pred HC--CCCEEEeCCCCCHHHHHHHHHCCCCCeeeecHHHHh
Confidence 77 7999999999999999999998 7999999999985
|
OYE was the first flavin-dependent enzyme identified, however its true physiological role remains elusive to this day. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Members of OYE family include trimethylamine dehydrogenase, 2,4-dienoyl-CoA reductase, enoate reductase, pentaerythriol tetranitrate reductase, xenobiotic reductase, and morphinone reductase. |
| >KOG1799 consensus Dihydropyrimidine dehydrogenase [Nucleotide transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.19 E-value=5.4e-11 Score=113.11 Aligned_cols=255 Identities=16% Similarity=0.153 Sum_probs=169.5
Q ss_pred eccccCCCCCCccceeEcCeeeccceEeCcccchhccCChhhHHHHHHHHHcCCceeecCCCCCCHHHHHhh--------
Q 017718 49 RPRILIDVSKIDMNTTVLGFKISMPIMIAPTAMQKMAHPEGEYATARAASAAGTIMTLSSWSTSSVEEVAST-------- 120 (367)
Q Consensus 49 ~pr~l~~~~~vd~st~i~g~~l~~Pi~iAPm~~~~l~~~~~e~~~a~aa~~~G~~~~vs~~~~~~~e~i~~~-------- 120 (367)
.|..|..++++|.+++..|.+.++||.++.- .|-....+.+-|-..|-++...---+..-..|...
T Consensus 91 ~~k~~~~l~~ie~~vd~~G~k~~npf~~~s~------Pp~t~~~lm~raf~~gwg~l~~kt~~ld~~kV~nv~prvar~~ 164 (471)
T KOG1799|consen 91 GLKALLYLKSIEELVDWDGQKPANPFHQKSK------PPPTIAELMDRAFPSGWGYLEQKTKILDENKVRNVEPRVARSP 164 (471)
T ss_pred chhhhcchhhhhhhccccCccCCCccccCCC------CCCccHHHHHhhhhcccchhheeeeecchhhheecccceeecc
Confidence 3566667889999999999999999988763 23335678888888887776531100000000000
Q ss_pred ------CC-CceEEE--Eee-----------------------------cCCHHHHHHHHHHHHHcCCcEEEEecCCCCC
Q 017718 121 ------GP-GIRFFQ--LYV-----------------------------YKDRNVVAQLVRRAERAGFKAIALTVDTPRL 162 (367)
Q Consensus 121 ------~~-~~~~~Q--Ly~-----------------------------~~d~~~~~~~l~ra~~~G~~ai~itvd~p~~ 162 (367)
.| ++.|.. |.. -.+..-..++..+.+++|.+.+-+|+.||..
T Consensus 165 t~~~~~~p~~~i~~nielIsdr~~e~~L~~f~eLk~~~p~~imIas~Mciynk~~w~el~d~~eqag~d~lE~nlscphg 244 (471)
T KOG1799|consen 165 TKRSCFIPKRPIPTNIELISDRKAEQYLGTFGELKNVEPVVIMIASEMCIYNKKCWMELNDSGEQAGQDDLETNLSCPHG 244 (471)
T ss_pred CCCCccccCCCccchhhhhccchHHHHHHHHHHhcccCCceeeehHHHHHhhhhhHHHHhhhHHhhcccchhccCCCCCC
Confidence 01 111110 000 0011224567788888999999999988862
Q ss_pred CchhHHhhhhcCCCC-ccccccccccccCccccccchhhHHHhhhccCccccHH---HHHhhcCCCEEEEecCCH----H
Q 017718 163 GRREADIKNRFTLPP-FLTLKNFQGLDLGKMDEANDSGLAAYVAGQIDRSLSWK---WLQTITKLPILVKGVLTA----E 234 (367)
Q Consensus 163 g~r~~~~~~~~~~p~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~---~l~~~~~~Pv~vK~v~~~----~ 234 (367)
++. ++... +. .++.++-+ |++....+|++.|...+. +
T Consensus 245 ------------m~ergmgla---------------------~g--q~p~v~~EvC~Wi~A~~~Ip~~~kmTPNitd~re 289 (471)
T KOG1799|consen 245 ------------MCERGMGLA---------------------LG--QCPIVDCEVCGWINAKATIPMVSKMTPNITDKRE 289 (471)
T ss_pred ------------Cccccccce---------------------ec--cChhhhHHHhhhhhhccccccccccCCCcccccc
Confidence 121 11111 11 13444333 999889999999998765 4
Q ss_pred HHHHHHHcCCcEEEEcCCC------------------CCCCCCc-------cchHHHHHHHHHHhcCCCcEEEecCCCCH
Q 017718 235 DARIAVQAGAAGIIVSNHG------------------ARQLDYV-------PATIMALEEVVKATQGRIPVFLDGGVRRG 289 (367)
Q Consensus 235 ~a~~~~~~G~d~i~vs~~g------------------g~~~~~~-------~~~~~~l~~i~~~~~~~~~via~GGI~~~ 289 (367)
.|+.+.+.|+.+|...|+- |+.-.+| |.++..+..|++.++ ..|+.+.|||.++
T Consensus 290 var~~~~~g~~GiaA~NTi~SvM~i~~~~~~P~~~~~~~sT~GG~S~~AvRPIAl~~V~~IA~~m~-~F~l~~~GGvEt~ 368 (471)
T KOG1799|consen 290 VARSVNPVGCEGIAAINTIMSVMGIDMKTLRPEPCVEGYSTPGGYSYKAVRPIALAKVMNIAKMMK-EFSLSGIGGVETG 368 (471)
T ss_pred cchhcCcccccchhhHhHHHHHhcccccccCCCcccccccCCCCccccccchHHHHHHHHHHHHhh-cCccccccCcccc
Confidence 4778888999999876620 1111122 334555666666664 7999999999999
Q ss_pred HHHHHHHHcCCCEEEechHHHHHhhccChHHHHHHHHHHHHHHHHHHHHhCCCChhhhccccee
Q 017718 290 TDVFKALALGASGIFIGRPVVYSLAAEGEKGVRRVLEMLREEFELAMALSGCRSLKEITRDHIV 353 (367)
Q Consensus 290 ~dv~kal~lGAd~V~ig~~~l~~l~~~G~~~v~~~i~~l~~el~~~m~~~G~~si~~l~~~~l~ 353 (367)
.|.+..|.+|++.|++++..+. +|.. .++.+..||+..|.+.|..+|++++++.|.
T Consensus 369 ~~~~~Fil~Gs~~vQVCt~V~~----~~~~----~V~~~Ca~LK~~m~~~~~~ti~~~~G~SL~ 424 (471)
T KOG1799|consen 369 YDAAEFILLGSNTVQVCTGVMM----HGYG----HVKTLCAELKDFMKQHNFSTIEEFRGHSLQ 424 (471)
T ss_pred cchhhHhhcCCcHhhhhhHHHh----cCcc----hHHHHHHHHHHHHHHcCchhhhhccCcchh
Confidence 9999999999999999998764 5654 456788999999999999999999998654
|
|
| >cd04734 OYE_like_3_FMN Old yellow enzyme (OYE)-related FMN binding domain, group 3 | Back alignment and domain information |
|---|
Probab=99.13 E-value=7.1e-09 Score=101.94 Aligned_cols=94 Identities=19% Similarity=0.208 Sum_probs=67.6
Q ss_pred HHHHhhcCC--CEEEEecC--------CHHH----HHHHHHcC-CcEEEEcCCCCCCC-----------CCcc-chHHHH
Q 017718 215 KWLQTITKL--PILVKGVL--------TAED----ARIAVQAG-AAGIIVSNHGARQL-----------DYVP-ATIMAL 267 (367)
Q Consensus 215 ~~l~~~~~~--Pv~vK~v~--------~~~~----a~~~~~~G-~d~i~vs~~gg~~~-----------~~~~-~~~~~l 267 (367)
+.+|+.++. ||.+|+.. +.++ ++.+.++| +|.|.||. |...- .... ..++..
T Consensus 199 ~~ir~~vg~~~~v~iRl~~~~~~~~G~~~~e~~~~~~~l~~~G~vd~i~vs~-g~~~~~~~~~~~~~~~~~~~~~~~~~~ 277 (343)
T cd04734 199 AAVRAAVGPDFIVGIRISGDEDTEGGLSPDEALEIAARLAAEGLIDYVNVSA-GSYYTLLGLAHVVPSMGMPPGPFLPLA 277 (343)
T ss_pred HHHHHHcCCCCeEEEEeehhhccCCCCCHHHHHHHHHHHHhcCCCCEEEeCC-CCCCcccccccccCCCCCCcchhHHHH
Confidence 388888865 45555442 2333 67888898 89999963 22110 0111 135667
Q ss_pred HHHHHHhcCCCcEEEecCCCCHHHHHHHHHcC-CCEEEechHHHH
Q 017718 268 EEVVKATQGRIPVFLDGGVRRGTDVFKALALG-ASGIFIGRPVVY 311 (367)
Q Consensus 268 ~~i~~~~~~~~~via~GGI~~~~dv~kal~lG-Ad~V~ig~~~l~ 311 (367)
..+++.+ ++|||++|||++.+++.+++..| ||+|++||+++.
T Consensus 278 ~~ik~~~--~ipvi~~G~i~~~~~~~~~l~~~~~D~V~~gR~~la 320 (343)
T cd04734 278 ARIKQAV--DLPVFHAGRIRDPAEAEQALAAGHADMVGMTRAHIA 320 (343)
T ss_pred HHHHHHc--CCCEEeeCCCCCHHHHHHHHHcCCCCeeeecHHhHh
Confidence 7777777 79999999999999999999975 999999999985
|
Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Other members of OYE family include trimethylamine dehydrogenase, 2,4-dienoyl-CoA reductase, enoate reductase, pentaerythriol tetranitrate reductase, xenobiotic reductase, and morphinone reductase. One member of this subgroup, the Sinorhizobium meliloti stachydrine utilization protein stcD, has been idenified as a putative N-methylproline demethylase. |
| >cd02932 OYE_YqiM_FMN Old yellow enzyme (OYE) YqjM-like FMN binding domain | Back alignment and domain information |
|---|
Probab=99.09 E-value=1.1e-08 Score=100.44 Aligned_cols=95 Identities=23% Similarity=0.254 Sum_probs=72.0
Q ss_pred HHHHhhc--CCCEEEEec--------CCHHH----HHHHHHcCCcEEEEcCCCCC--CC-CCcc-chHHHHHHHHHHhcC
Q 017718 215 KWLQTIT--KLPILVKGV--------LTAED----ARIAVQAGAAGIIVSNHGAR--QL-DYVP-ATIMALEEVVKATQG 276 (367)
Q Consensus 215 ~~l~~~~--~~Pv~vK~v--------~~~~~----a~~~~~~G~d~i~vs~~gg~--~~-~~~~-~~~~~l~~i~~~~~~ 276 (367)
+.+|+.+ +.||.+|.. .+.++ ++.+.+.|+|+|.++..+.+ +. ...+ ...+.+.++++.+
T Consensus 212 ~aIR~~vG~d~~v~vri~~~~~~~~g~~~~e~~~ia~~Le~~gvd~iev~~g~~~~~~~~~~~~~~~~~~~~~ir~~~-- 289 (336)
T cd02932 212 DAVRAVWPEDKPLFVRISATDWVEGGWDLEDSVELAKALKELGVDLIDVSSGGNSPAQKIPVGPGYQVPFAERIRQEA-- 289 (336)
T ss_pred HHHHHHcCCCceEEEEEcccccCCCCCCHHHHHHHHHHHHHcCCCEEEECCCCCCcccccCCCccccHHHHHHHHhhC--
Confidence 3888888 689999966 23443 56778899999999753221 11 1111 1346677777777
Q ss_pred CCcEEEecCCCCHHHHHHHHHcC-CCEEEechHHHH
Q 017718 277 RIPVFLDGGVRRGTDVFKALALG-ASGIFIGRPVVY 311 (367)
Q Consensus 277 ~~~via~GGI~~~~dv~kal~lG-Ad~V~ig~~~l~ 311 (367)
++||+++|||.+++++.++|..| ||+|++||+++.
T Consensus 290 ~iPVi~~G~i~t~~~a~~~l~~g~aD~V~~gR~~i~ 325 (336)
T cd02932 290 GIPVIAVGLITDPEQAEAILESGRADLVALGRELLR 325 (336)
T ss_pred CCCEEEeCCCCCHHHHHHHHHcCCCCeehhhHHHHh
Confidence 79999999999999999999998 999999999985
|
YqjM is involved in the oxidative stress response of Bacillus subtilis. Like the other OYE members, each monomer of YqjM contains FMN as a non-covalently bound cofactor and uses NADPH as a reducing agent. The YqjM enzyme exists as a homotetramer that is assembled as a dimer of catalytically dependent dimers, while other OYE members exist only as monomers or dimers. Moreover, the protein displays a shared active site architecture where an arginine finger at the COOH terminus of one monomer extends into the active site of the adjacent monomer and is directly involved in substrate recognition. Another remarkable difference in the binding of the ligand in YqjM is represented by the contribution of the NH2-terminal tyrosine instead of a COOH-terminal tyrosine in OYE and its homologs. |
| >PRK01130 N-acetylmannosamine-6-phosphate 2-epimerase; Provisional | Back alignment and domain information |
|---|
Probab=99.06 E-value=1.3e-08 Score=93.99 Aligned_cols=92 Identities=22% Similarity=0.268 Sum_probs=72.4
Q ss_pred HHHhhcCCCEEEEecCCHHHHHHHHHcCCcEEEEcCCCCCCC--CCccchHHHHHHHHHHhcCCCcEEEecCCCCHHHHH
Q 017718 216 WLQTITKLPILVKGVLTAEDARIAVQAGAAGIIVSNHGARQL--DYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVF 293 (367)
Q Consensus 216 ~l~~~~~~Pv~vK~v~~~~~a~~~~~~G~d~i~vs~~gg~~~--~~~~~~~~~l~~i~~~~~~~~~via~GGI~~~~dv~ 293 (367)
.+++..++|+++ .+.+.++++.+.+.|+|+|.++++|-+.. .......+.++++++.+ ++||++.|||++++|+.
T Consensus 113 ~~~~~~~i~vi~-~v~t~ee~~~a~~~G~d~i~~~~~g~t~~~~~~~~~~~~~i~~i~~~~--~iPvia~GGI~t~~~~~ 189 (221)
T PRK01130 113 RIKEYPGQLLMA-DCSTLEEGLAAQKLGFDFIGTTLSGYTEETKKPEEPDFALLKELLKAV--GCPVIAEGRINTPEQAK 189 (221)
T ss_pred HHHhCCCCeEEE-eCCCHHHHHHHHHcCCCEEEcCCceeecCCCCCCCcCHHHHHHHHHhC--CCCEEEECCCCCHHHHH
Confidence 444324677754 67789999999999999998765443221 22344577888888877 79999999999999999
Q ss_pred HHHHcCCCEEEechHHH
Q 017718 294 KALALGASGIFIGRPVV 310 (367)
Q Consensus 294 kal~lGAd~V~ig~~~l 310 (367)
+++++|||+|++|+.++
T Consensus 190 ~~l~~GadgV~iGsai~ 206 (221)
T PRK01130 190 KALELGAHAVVVGGAIT 206 (221)
T ss_pred HHHHCCCCEEEEchHhc
Confidence 99999999999999875
|
|
| >cd04735 OYE_like_4_FMN Old yellow enzyme (OYE)-related FMN binding domain, group 4 | Back alignment and domain information |
|---|
Probab=99.02 E-value=1.2e-08 Score=100.63 Aligned_cols=97 Identities=20% Similarity=0.184 Sum_probs=69.3
Q ss_pred HHHHhhcC------CCEEEEecC--------CHH----HHHHHHHcCCcEEEEcCCCCCC--CCCccchHHHHHHHHHHh
Q 017718 215 KWLQTITK------LPILVKGVL--------TAE----DARIAVQAGAAGIIVSNHGARQ--LDYVPATIMALEEVVKAT 274 (367)
Q Consensus 215 ~~l~~~~~------~Pv~vK~v~--------~~~----~a~~~~~~G~d~i~vs~~gg~~--~~~~~~~~~~l~~i~~~~ 274 (367)
+.+|+.++ .||.+|... +.+ .++.+.++|+|+|.|+..+.+. ........+.+.++++.+
T Consensus 202 ~~vr~~vg~~~~~~~~v~~R~s~~~~~~~g~~~ee~~~i~~~L~~~GvD~I~Vs~g~~~~~~~~~~~~~~~~~~~ik~~~ 281 (353)
T cd04735 202 KAVQEVIDKHADKDFILGYRFSPEEPEEPGIRMEDTLALVDKLADKGLDYLHISLWDFDRKSRRGRDDNQTIMELVKERI 281 (353)
T ss_pred HHHHHHhccccCCCceEEEEECcccccCCCCCHHHHHHHHHHHHHcCCCEEEeccCccccccccCCcchHHHHHHHHHHh
Confidence 37887764 466666652 233 3678889999999997532211 111122344555666655
Q ss_pred cCCCcEEEecCCCCHHHHHHHHHcCCCEEEechHHHH
Q 017718 275 QGRIPVFLDGGVRRGTDVFKALALGASGIFIGRPVVY 311 (367)
Q Consensus 275 ~~~~~via~GGI~~~~dv~kal~lGAd~V~ig~~~l~ 311 (367)
..++|||++|||++++++.++++.|||+|++||+++.
T Consensus 282 ~~~iPVi~~Ggi~t~e~ae~~l~~gaD~V~~gR~lia 318 (353)
T cd04735 282 AGRLPLIAVGSINTPDDALEALETGADLVAIGRGLLV 318 (353)
T ss_pred CCCCCEEEECCCCCHHHHHHHHHcCCChHHHhHHHHh
Confidence 4479999999999999999999999999999999985
|
Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Other members of OYE family include trimethylamine dehydrogenase, 2,4-dienoyl-CoA reductase, enoate reductase, pentaerythriol tetranitrate reductase, xenobiotic reductase, and morphinone reductase. |
| >cd02931 ER_like_FMN Enoate reductase (ER)-like FMN-binding domain | Back alignment and domain information |
|---|
Probab=99.01 E-value=2.7e-08 Score=99.26 Aligned_cols=93 Identities=18% Similarity=0.268 Sum_probs=69.7
Q ss_pred HHHHhhc--CCCEEEEecC----------------------CHHH----HHHHHHcCCcEEEEcCCCCC--CCC-C----
Q 017718 215 KWLQTIT--KLPILVKGVL----------------------TAED----ARIAVQAGAAGIIVSNHGAR--QLD-Y---- 259 (367)
Q Consensus 215 ~~l~~~~--~~Pv~vK~v~----------------------~~~~----a~~~~~~G~d~i~vs~~gg~--~~~-~---- 259 (367)
+.+|+.+ +.||.+|+.. +.++ ++.+.++|+|+|.|+. |+ +.. .
T Consensus 209 ~~vr~~~g~~f~v~vri~~~~~~~~~~~~~~~~~~~~~~g~~~e~~~~~~~~l~~~gvD~l~vs~--g~~~~~~~~~~~~ 286 (382)
T cd02931 209 EEIKARCGEDFPVSLRYSVKSYIKDLRQGALPGEEFQEKGRDLEEGLKAAKILEEAGYDALDVDA--GSYDAWYWNHPPM 286 (382)
T ss_pred HHHHHhcCCCceEEEEEechhhccccccccccccccccCCCCHHHHHHHHHHHHHhCCCEEEeCC--CCCcccccccCCc
Confidence 3888887 4699999863 2233 6778889999999964 32 111 1
Q ss_pred --ccc-hHHHHHHHHHHhcCCCcEEEecCCCCHHHHHHHHHcC-CCEEEechHHHH
Q 017718 260 --VPA-TIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALG-ASGIFIGRPVVY 311 (367)
Q Consensus 260 --~~~-~~~~l~~i~~~~~~~~~via~GGI~~~~dv~kal~lG-Ad~V~ig~~~l~ 311 (367)
... .++....+++.+ ++||+++|||++++++.++|+-| ||+|++||+++.
T Consensus 287 ~~~~~~~~~~~~~ik~~~--~~pvi~~G~i~~~~~~~~~l~~g~~D~V~~gR~~la 340 (382)
T cd02931 287 YQKKGMYLPYCKALKEVV--DVPVIMAGRMEDPELASEAINEGIADMISLGRPLLA 340 (382)
T ss_pred cCCcchhHHHHHHHHHHC--CCCEEEeCCCCCHHHHHHHHHcCCCCeeeechHhHh
Confidence 111 134566777776 79999999999999999999976 999999999975
|
Enoate reductase catalyzes the NADH-dependent reduction of carbon-carbon double bonds of several molecules, including nonactivated 2-enoates, alpha,beta-unsaturated aldehydes, cyclic ketones, and methylketones. ERs are similar to 2,4-dienoyl-CoA reductase from E. coli and to the old yellow enzyme from Saccharomyces cerevisiae. |
| >cd04729 NanE N-acetylmannosamine-6-phosphate epimerase (NanE) converts N-acetylmannosamine-6-phosphate to N-acetylglucosamine-6-phosphate | Back alignment and domain information |
|---|
Probab=99.00 E-value=3e-08 Score=91.42 Aligned_cols=93 Identities=24% Similarity=0.283 Sum_probs=73.9
Q ss_pred HHHhhcCCCEEEEecCCHHHHHHHHHcCCcEEEEcCCCCCC--CCCccchHHHHHHHHHHhcCCCcEEEecCCCCHHHHH
Q 017718 216 WLQTITKLPILVKGVLTAEDARIAVQAGAAGIIVSNHGARQ--LDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVF 293 (367)
Q Consensus 216 ~l~~~~~~Pv~vK~v~~~~~a~~~~~~G~d~i~vs~~gg~~--~~~~~~~~~~l~~i~~~~~~~~~via~GGI~~~~dv~ 293 (367)
++++..++|+++ .+.+.+++..+.++|+|+|.+.++|-+. .......++.+.++++.+ ++||++.|||++++|+.
T Consensus 117 ~~~~~g~~~iiv-~v~t~~ea~~a~~~G~d~i~~~~~g~t~~~~~~~~~~~~~l~~i~~~~--~ipvia~GGI~~~~~~~ 193 (219)
T cd04729 117 RIHEEYNCLLMA-DISTLEEALNAAKLGFDIIGTTLSGYTEETAKTEDPDFELLKELRKAL--GIPVIAEGRINSPEQAA 193 (219)
T ss_pred HHHHHhCCeEEE-ECCCHHHHHHHHHcCCCEEEccCccccccccCCCCCCHHHHHHHHHhc--CCCEEEeCCCCCHHHHH
Confidence 555544577766 5678899999999999999776554322 122335678888888877 79999999999999999
Q ss_pred HHHHcCCCEEEechHHHH
Q 017718 294 KALALGASGIFIGRPVVY 311 (367)
Q Consensus 294 kal~lGAd~V~ig~~~l~ 311 (367)
+++.+|||+|++|+.++.
T Consensus 194 ~~l~~GadgV~vGsal~~ 211 (219)
T cd04729 194 KALELGADAVVVGSAITR 211 (219)
T ss_pred HHHHCCCCEEEEchHHhC
Confidence 999999999999998764
|
This reaction is part of the pathway that allows the usage of sialic acid as a carbohydrate source. Sialic acids are a family of related sugars that are found as a component of glycoproteins, gangliosides, and other sialoglycoconjugates. |
| >cd04747 OYE_like_5_FMN Old yellow enzyme (OYE)-related FMN binding domain, group 5 | Back alignment and domain information |
|---|
Probab=98.97 E-value=6.3e-08 Score=95.69 Aligned_cols=93 Identities=18% Similarity=0.158 Sum_probs=67.9
Q ss_pred HHHHhhc--CCCEEEEecC------------CHHH----HHHHHHcCCcEEEEcCCCCC--CCCCccchHHHHHHHHHHh
Q 017718 215 KWLQTIT--KLPILVKGVL------------TAED----ARIAVQAGAAGIIVSNHGAR--QLDYVPATIMALEEVVKAT 274 (367)
Q Consensus 215 ~~l~~~~--~~Pv~vK~v~------------~~~~----a~~~~~~G~d~i~vs~~gg~--~~~~~~~~~~~l~~i~~~~ 274 (367)
+.+|+.+ +.||.+|+.. +.++ ++.+.++|+|.|.++. |.. +...+ .......++++.+
T Consensus 202 ~air~~vG~d~~v~vRis~~~~~~~~~~~g~~~~e~~~~~~~l~~~gvd~i~vs~-g~~~~~~~~~-~~~~~~~~~k~~~ 279 (361)
T cd04747 202 KAIRAAVGPDFPIILRFSQWKQQDYTARLADTPDELEALLAPLVDAGVDIFHCST-RRFWEPEFEG-SELNLAGWTKKLT 279 (361)
T ss_pred HHHHHHcCCCCeEEEEECcccccccccCCCCCHHHHHHHHHHHHHcCCCEEEecC-CCccCCCcCc-cchhHHHHHHHHc
Confidence 3888887 4799999872 2233 5567899999999875 211 11111 2344555666666
Q ss_pred cCCCcEEEecCC------------------CCHHHHHHHHHcC-CCEEEechHHHH
Q 017718 275 QGRIPVFLDGGV------------------RRGTDVFKALALG-ASGIFIGRPVVY 311 (367)
Q Consensus 275 ~~~~~via~GGI------------------~~~~dv~kal~lG-Ad~V~ig~~~l~ 311 (367)
++||+++|+| ++++++.++|.-| ||+|++||+++.
T Consensus 280 --~~pv~~~G~i~~~~~~~~~~~~~~~~~~~~~~~a~~~l~~g~~D~V~~gR~~ia 333 (361)
T cd04747 280 --GLPTITVGSVGLDGDFIGAFAGDEGASPASLDRLLERLERGEFDLVAVGRALLS 333 (361)
T ss_pred --CCCEEEECCcccccccccccccccccccCCHHHHHHHHHCCCCCeehhhHHHHh
Confidence 7999999999 6999999999976 999999999875
|
Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Other members of OYE family include trimethylamine dehydrogenase, 2,4-dienoyl-CoA reductase, enoate reductase, pentaerythriol tetranitrate reductase, xenobiotic reductase, and morphinone reductase. |
| >cd02930 DCR_FMN 2,4-dienoyl-CoA reductase (DCR) FMN-binding domain | Back alignment and domain information |
|---|
Probab=98.91 E-value=7.5e-08 Score=95.08 Aligned_cols=95 Identities=22% Similarity=0.212 Sum_probs=68.5
Q ss_pred HHHHhhcC--CCEEEEecC--------CHHH----HHHHHHcCCcEEEEcC--CCCCCCC----Cccc-hHHHHHHHHHH
Q 017718 215 KWLQTITK--LPILVKGVL--------TAED----ARIAVQAGAAGIIVSN--HGARQLD----YVPA-TIMALEEVVKA 273 (367)
Q Consensus 215 ~~l~~~~~--~Pv~vK~v~--------~~~~----a~~~~~~G~d~i~vs~--~gg~~~~----~~~~-~~~~l~~i~~~ 273 (367)
+.+|+..+ .||.+|+.. +.++ ++.+.++|+|+|.||. |..+... .... ..+...++++.
T Consensus 195 ~aIR~~vG~d~~v~iRi~~~D~~~~g~~~~e~~~i~~~Le~~G~d~i~vs~g~~e~~~~~~~~~~~~~~~~~~~~~ik~~ 274 (353)
T cd02930 195 RAVRAAVGEDFIIIYRLSMLDLVEGGSTWEEVVALAKALEAAGADILNTGIGWHEARVPTIATSVPRGAFAWATAKLKRA 274 (353)
T ss_pred HHHHHHcCCCceEEEEecccccCCCCCCHHHHHHHHHHHHHcCCCEEEeCCCcCCCCCccccccCCchhhHHHHHHHHHh
Confidence 37888774 567766652 3333 6788899999999974 2222111 1111 23445677777
Q ss_pred hcCCCcEEEecCCCCHHHHHHHHHcC-CCEEEechHHHH
Q 017718 274 TQGRIPVFLDGGVRRGTDVFKALALG-ASGIFIGRPVVY 311 (367)
Q Consensus 274 ~~~~~~via~GGI~~~~dv~kal~lG-Ad~V~ig~~~l~ 311 (367)
+ ++||+++|++++.+++.++++.| +|+|++||+++.
T Consensus 275 v--~iPVi~~G~i~~~~~a~~~i~~g~~D~V~~gR~~l~ 311 (353)
T cd02930 275 V--DIPVIASNRINTPEVAERLLADGDADMVSMARPFLA 311 (353)
T ss_pred C--CCCEEEcCCCCCHHHHHHHHHCCCCChhHhhHHHHH
Confidence 6 89999999999999999999976 999999999875
|
DCR in E. coli is an iron-sulfur flavoenzyme which contains FMN, FAD, and a 4Fe-4S cluster. It is also a monomer, unlike that of its eukaryotic counterparts which form homotetramers and lack the flavin and iron-sulfur cofactors. Metabolism of unsaturated fatty acids requires auxiliary enzymes in addition to those used in b-oxidation. After a given number of cycles through the b-oxidation pathway, those unsaturated fatty acyl-CoAs with double bonds at even-numbered carbon positions contain 2-trans, 4-cis double bonds that can not be modified by enoyl-CoA hydratase. DCR utilizes NADPH to remove the C4-C5 double bond. DCR can catalyze the reduction of both natural fatty acids with cis double bonds, as well as substrates containing trans double bonds. The reaction is initiated by hybrid transfer from NADPH to FAD, which in turn transfers electrons, one at a time, to FMN via the 4Fe-4S cluster. The fully reduced FMN provi |
| >PRK08255 salicylyl-CoA 5-hydroxylase; Reviewed | Back alignment and domain information |
|---|
Probab=98.90 E-value=2.6e-07 Score=100.07 Aligned_cols=94 Identities=24% Similarity=0.232 Sum_probs=69.5
Q ss_pred HHHHhhc--CCCEEEEecC--------CH----HHHHHHHHcCCcEEEEcCCCCCCCC----Ccc-chHHHHHHHHHHhc
Q 017718 215 KWLQTIT--KLPILVKGVL--------TA----EDARIAVQAGAAGIIVSNHGARQLD----YVP-ATIMALEEVVKATQ 275 (367)
Q Consensus 215 ~~l~~~~--~~Pv~vK~v~--------~~----~~a~~~~~~G~d~i~vs~~gg~~~~----~~~-~~~~~l~~i~~~~~ 275 (367)
+.+|+.+ +.||.+|+.. +. +.++.+.++|+|.|.||. |++... .++ .......++++.+
T Consensus 609 ~~ir~~~~~~~~v~~ri~~~~~~~~g~~~~~~~~~~~~l~~~g~d~i~vs~-g~~~~~~~~~~~~~~~~~~~~~ik~~~- 686 (765)
T PRK08255 609 RAVRAVWPAEKPMSVRISAHDWVEGGNTPDDAVEIARAFKAAGADLIDVSS-GQVSKDEKPVYGRMYQTPFADRIRNEA- 686 (765)
T ss_pred HHHHHhcCCCCeeEEEEccccccCCCCCHHHHHHHHHHHHhcCCcEEEeCC-CCCCcCCCCCcCccccHHHHHHHHHHc-
Confidence 3788876 4799999973 23 336788999999999963 222111 111 1233445666666
Q ss_pred CCCcEEEecCCCCHHHHHHHHHcC-CCEEEechHHHH
Q 017718 276 GRIPVFLDGGVRRGTDVFKALALG-ASGIFIGRPVVY 311 (367)
Q Consensus 276 ~~~~via~GGI~~~~dv~kal~lG-Ad~V~ig~~~l~ 311 (367)
++||+++|+|++++++.++|..| ||+|++||+++.
T Consensus 687 -~~pv~~~G~i~~~~~a~~~l~~g~~D~v~~gR~~l~ 722 (765)
T PRK08255 687 -GIATIAVGAISEADHVNSIIAAGRADLCALARPHLA 722 (765)
T ss_pred -CCEEEEeCCCCCHHHHHHHHHcCCcceeeEcHHHHh
Confidence 79999999999999999999976 999999999985
|
|
| >cd02933 OYE_like_FMN Old yellow enzyme (OYE)-like FMN binding domain | Back alignment and domain information |
|---|
Probab=98.89 E-value=3.9e-08 Score=96.55 Aligned_cols=93 Identities=18% Similarity=0.084 Sum_probs=71.6
Q ss_pred HHHHhhcCC-CEEEEecC-----------CH----HHHHHHHHcCCcEEEEcCCCCCCCCCccchHHHHHHHHHHhcCCC
Q 017718 215 KWLQTITKL-PILVKGVL-----------TA----EDARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRI 278 (367)
Q Consensus 215 ~~l~~~~~~-Pv~vK~v~-----------~~----~~a~~~~~~G~d~i~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~~ 278 (367)
+.+|+.++. ||.+|+.. +. +.++.+.+.|+|.|.|+. |..........++...++++.+ ++
T Consensus 210 ~air~~vg~d~v~vRis~~~~~~~~~~~~~~ee~~~~~~~l~~~g~d~i~vs~-g~~~~~~~~~~~~~~~~ik~~~--~i 286 (338)
T cd02933 210 DAVAEAIGADRVGIRLSPFGTFNDMGDSDPEATFSYLAKELNKRGLAYLHLVE-PRVAGNPEDQPPDFLDFLRKAF--KG 286 (338)
T ss_pred HHHHHHhCCCceEEEECccccCCCCCCCCCHHHHHHHHHHHHHcCCcEEEEec-CCCCCcccccchHHHHHHHHHc--CC
Confidence 388887754 89999862 22 336788899999999963 3322112334567777888877 79
Q ss_pred cEEEecCCCCHHHHHHHHHcC-CCEEEechHHHH
Q 017718 279 PVFLDGGVRRGTDVFKALALG-ASGIFIGRPVVY 311 (367)
Q Consensus 279 ~via~GGI~~~~dv~kal~lG-Ad~V~ig~~~l~ 311 (367)
|||++|||+ ++++.++++.| ||+|++||+++.
T Consensus 287 pvi~~G~i~-~~~a~~~l~~g~~D~V~~gR~~la 319 (338)
T cd02933 287 PLIAAGGYD-AESAEAALADGKADLVAFGRPFIA 319 (338)
T ss_pred CEEEECCCC-HHHHHHHHHcCCCCEEEeCHhhhh
Confidence 999999997 99999999976 999999999875
|
OYE was the first flavin-dependent enzyme identified, however its true physiological role remains elusive to this day. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Members of OYE family include 12-oxophytodienoate reductase, pentaerythritol tetranitrate reductase, morphinone reductase, and related enzymes. |
| >PF04131 NanE: Putative N-acetylmannosamine-6-phosphate epimerase; InterPro: IPR007260 This family represents a putative ManNAc-6-P-to-GlcNAc-6P epimerase in the N-acetylmannosamine (ManNAc) utilization pathway found mainly in pathogenic bacteria for the reaction: |
Back alignment and domain information |
|---|
Probab=98.86 E-value=2.6e-08 Score=88.59 Aligned_cols=90 Identities=22% Similarity=0.290 Sum_probs=69.5
Q ss_pred HHHhhcCCCEEEEecCCHHHHHHHHHcCCcEEEEcCCCCCC--CCCccchHHHHHHHHHHhcCCCcEEEecCCCCHHHHH
Q 017718 216 WLQTITKLPILVKGVLTAEDARIAVQAGAAGIIVSNHGARQ--LDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVF 293 (367)
Q Consensus 216 ~l~~~~~~Pv~vK~v~~~~~a~~~~~~G~d~i~vs~~gg~~--~~~~~~~~~~l~~i~~~~~~~~~via~GGI~~~~dv~ 293 (367)
.+|+.. -+++..+.+.|++..+.++|+|.|-....|.+. .. ..+.++++.++.+. .+|||+.|+|.+++++.
T Consensus 87 ~i~~~~--~l~MADist~ee~~~A~~~G~D~I~TTLsGYT~~t~~-~~pD~~lv~~l~~~---~~pvIaEGri~tpe~a~ 160 (192)
T PF04131_consen 87 EIKEKY--QLVMADISTLEEAINAAELGFDIIGTTLSGYTPYTKG-DGPDFELVRELVQA---DVPVIAEGRIHTPEQAA 160 (192)
T ss_dssp HHHHCT--SEEEEE-SSHHHHHHHHHTT-SEEE-TTTTSSTTSTT-SSHHHHHHHHHHHT---TSEEEEESS--SHHHHH
T ss_pred HHHHhC--cEEeeecCCHHHHHHHHHcCCCEEEcccccCCCCCCC-CCCCHHHHHHHHhC---CCcEeecCCCCCHHHHH
Confidence 677765 677889999999999999999999876666542 23 56789999998763 79999999999999999
Q ss_pred HHHHcCCCEEEechHHHH
Q 017718 294 KALALGASGIFIGRPVVY 311 (367)
Q Consensus 294 kal~lGAd~V~ig~~~l~ 311 (367)
++|.+||++|.+|+++--
T Consensus 161 ~al~~GA~aVVVGsAITr 178 (192)
T PF04131_consen 161 KALELGAHAVVVGSAITR 178 (192)
T ss_dssp HHHHTT-SEEEE-HHHH-
T ss_pred HHHhcCCeEEEECcccCC
Confidence 999999999999997753
|
; GO: 0047465 N-acylglucosamine-6-phosphate 2-epimerase activity, 0006051 N-acetylmannosamine metabolic process; PDB: 1Y0E_B 3IGS_A 1YXY_A 3Q58_B. |
| >cd04733 OYE_like_2_FMN Old yellow enzyme (OYE)-related FMN binding domain, group 2 | Back alignment and domain information |
|---|
Probab=98.82 E-value=7.8e-08 Score=94.40 Aligned_cols=92 Identities=25% Similarity=0.361 Sum_probs=70.3
Q ss_pred HHHhhc--CCCEEEEec--------CCHHH----HHHHHHcCCcEEEEcCCCCC--CCCCc---------cc--hHHHHH
Q 017718 216 WLQTIT--KLPILVKGV--------LTAED----ARIAVQAGAAGIIVSNHGAR--QLDYV---------PA--TIMALE 268 (367)
Q Consensus 216 ~l~~~~--~~Pv~vK~v--------~~~~~----a~~~~~~G~d~i~vs~~gg~--~~~~~---------~~--~~~~l~ 268 (367)
.+|+.. +.||.+|.. .+.++ ++.+.++|+|.|.|+. |+ +.... +. .++...
T Consensus 208 aIR~avG~d~~v~vris~~~~~~~g~~~eea~~ia~~Le~~Gvd~iev~~--g~~~~~~~~~~~~~~~~~~~~~~~~~~~ 285 (338)
T cd04733 208 AIRAAVGPGFPVGIKLNSADFQRGGFTEEDALEVVEALEEAGVDLVELSG--GTYESPAMAGAKKESTIAREAYFLEFAE 285 (338)
T ss_pred HHHHHcCCCCeEEEEEcHHHcCCCCCCHHHHHHHHHHHHHcCCCEEEecC--CCCCCccccccccCCccccchhhHHHHH
Confidence 788887 479999986 34443 6788899999999964 32 11110 01 145566
Q ss_pred HHHHHhcCCCcEEEecCCCCHHHHHHHHHcC-CCEEEechHHHH
Q 017718 269 EVVKATQGRIPVFLDGGVRRGTDVFKALALG-ASGIFIGRPVVY 311 (367)
Q Consensus 269 ~i~~~~~~~~~via~GGI~~~~dv~kal~lG-Ad~V~ig~~~l~ 311 (367)
++++.+ ++||+++|+|.+.+++.++++.| ||+|++||+++-
T Consensus 286 ~ik~~v--~iPVi~~G~i~t~~~a~~~l~~g~aD~V~lgR~~ia 327 (338)
T cd04733 286 KIRKVT--KTPLMVTGGFRTRAAMEQALASGAVDGIGLARPLAL 327 (338)
T ss_pred HHHHHc--CCCEEEeCCCCCHHHHHHHHHcCCCCeeeeChHhhh
Confidence 777777 79999999999999999999987 999999999974
|
Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Other members of OYE family include trimethylamine dehydrogenase, 2,4-dienoyl-CoA reductase, enoate reductase, pentaerythriol tetranitrate reductase, xenobiotic reductase, and morphinone reductase. |
| >COG1902 NemA NADH:flavin oxidoreductases, Old Yellow Enzyme family [Energy production and conversion] | Back alignment and domain information |
|---|
Probab=98.81 E-value=1.4e-06 Score=86.11 Aligned_cols=95 Identities=28% Similarity=0.350 Sum_probs=69.1
Q ss_pred HHHHhhcC--CCEEEEecC---------CH----HHHHHHHHcC-CcEEEEcCCCCC---CCCCc-cc-hHHHHHHHHHH
Q 017718 215 KWLQTITK--LPILVKGVL---------TA----EDARIAVQAG-AAGIIVSNHGAR---QLDYV-PA-TIMALEEVVKA 273 (367)
Q Consensus 215 ~~l~~~~~--~Pv~vK~v~---------~~----~~a~~~~~~G-~d~i~vs~~gg~---~~~~~-~~-~~~~l~~i~~~ 273 (367)
+.+|+.++ .||.++++. +. +-++.+.+.| +|+|.+++-+.. ..... +. .......++..
T Consensus 207 ~aVr~~vg~~~~vg~Rls~~d~~~~~g~~~~e~~~la~~L~~~G~~d~i~vs~~~~~~~~~~~~~~~~~~~~~a~~i~~~ 286 (363)
T COG1902 207 DAVREAVGADFPVGVRLSPDDFFDGGGLTIEEAVELAKALEEAGLVDYIHVSEGGYERGGTITVSGPGYQVEFAARIKKA 286 (363)
T ss_pred HHHHHHhCCCceEEEEECccccCCCCCCCHHHHHHHHHHHHhcCCccEEEeecccccCCCCccccccchhHHHHHHHHHh
Confidence 38888885 589999873 22 3378899999 799999862211 11111 11 12334445555
Q ss_pred hcCCCcEEEecCCCCHHHHHHHHHcC-CCEEEechHHHH
Q 017718 274 TQGRIPVFLDGGVRRGTDVFKALALG-ASGIFIGRPVVY 311 (367)
Q Consensus 274 ~~~~~~via~GGI~~~~dv~kal~lG-Ad~V~ig~~~l~ 311 (367)
+ .+|||++|+|++++.+.++++-| ||+|.+||+||.
T Consensus 287 ~--~~pvi~~G~i~~~~~Ae~~l~~g~aDlVa~gR~~la 323 (363)
T COG1902 287 V--RIPVIAVGGINDPEQAEEILASGRADLVAMGRPFLA 323 (363)
T ss_pred c--CCCEEEeCCCCCHHHHHHHHHcCCCCEEEechhhhc
Confidence 5 69999999999999999999998 999999999985
|
|
| >cd02929 TMADH_HD_FMN Trimethylamine dehydrogenase (TMADH) and histamine dehydrogenase (HD) FMN-binding domain | Back alignment and domain information |
|---|
Probab=98.75 E-value=9.3e-07 Score=87.88 Aligned_cols=93 Identities=12% Similarity=0.023 Sum_probs=64.2
Q ss_pred HHHHhhcC--CCEEEEecC----------CHHH----HHHHHHcCCcEEEEcCCCCCCC-----CC--ccchHHHHHHHH
Q 017718 215 KWLQTITK--LPILVKGVL----------TAED----ARIAVQAGAAGIIVSNHGARQL-----DY--VPATIMALEEVV 271 (367)
Q Consensus 215 ~~l~~~~~--~Pv~vK~v~----------~~~~----a~~~~~~G~d~i~vs~~gg~~~-----~~--~~~~~~~l~~i~ 271 (367)
+.+|+.++ .||.+|+.. +.++ ++.+.+ .+|.+.++. |.... .. ....++...+++
T Consensus 208 ~aIr~~vg~~~~v~vRls~~~~~~~~g~~~~~e~~~~~~~l~~-~~D~i~vs~-g~~~~~~~~~~~~~~~~~~~~~~~ik 285 (370)
T cd02929 208 EDTKDAVGDDCAVATRFSVDELIGPGGIESEGEGVEFVEMLDE-LPDLWDVNV-GDWANDGEDSRFYPEGHQEPYIKFVK 285 (370)
T ss_pred HHHHHHcCCCceEEEEecHHHhcCCCCCCCHHHHHHHHHHHHh-hCCEEEecC-CCccccccccccCCccccHHHHHHHH
Confidence 38888874 567777651 2333 344544 489998864 21110 00 111245566777
Q ss_pred HHhcCCCcEEEecCCCCHHHHHHHHHcC-CCEEEechHHHH
Q 017718 272 KATQGRIPVFLDGGVRRGTDVFKALALG-ASGIFIGRPVVY 311 (367)
Q Consensus 272 ~~~~~~~~via~GGI~~~~dv~kal~lG-Ad~V~ig~~~l~ 311 (367)
+.+ ++|||++|||++++++.++|..| ||+|++||+++-
T Consensus 286 ~~~--~~pvi~~G~i~~~~~~~~~l~~g~~D~V~~gR~~la 324 (370)
T cd02929 286 QVT--SKPVVGVGRFTSPDKMVEVVKSGILDLIGAARPSIA 324 (370)
T ss_pred HHC--CCCEEEeCCCCCHHHHHHHHHcCCCCeeeechHhhh
Confidence 766 79999999999999999999987 999999999984
|
TMADH is an iron-sulfur flavoprotein that catalyzes the oxidative demethylation of trimethylamine to form dimethylamine and formaldehyde. The protein forms a symetrical dimer with each subunit containing one 4Fe-4S cluster and one FMN cofactor. It contains a unique flavin, in the form of a 6-S-cysteinyl FMN which is bent by ~25 degrees along the N5-N10 axis of the flavin isoalloxazine ring. This modification of the conformation of the flavin is thought to facilitate catalysis.The closely related histamine dehydrogenase catalyzes oxidative deamination of histamine. |
| >cd00331 IGPS Indole-3-glycerol phosphate synthase (IGPS); an enzyme in the tryptophan biosynthetic pathway, catalyzing the ring closure reaction of 1-(o-carboxyphenylamino)-1-deoxyribulose-5-phosphate (CdRP) to indole-3-glycerol phosphate (IGP), accompanied by the release of carbon dioxide and water | Back alignment and domain information |
|---|
Probab=98.75 E-value=2.4e-07 Score=85.13 Aligned_cols=86 Identities=20% Similarity=0.298 Sum_probs=65.4
Q ss_pred CCCEEEEecCCHHHHHHHHHcCCcEEEEcCCCCCCCCCccchHHHHHHHHHHhcCCCcEEEecCCCCHHHHHHHHHcCCC
Q 017718 222 KLPILVKGVLTAEDARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGAS 301 (367)
Q Consensus 222 ~~Pv~vK~v~~~~~a~~~~~~G~d~i~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~~~via~GGI~~~~dv~kal~lGAd 301 (367)
++-+++ .+.+.++++.+.+.|+|.+.+++..++. ..+..+.+.++++.++.++||++.|||.+++|+.+++.+|||
T Consensus 121 g~~~~v-~v~~~~e~~~~~~~g~~~i~~t~~~~~~---~~~~~~~~~~l~~~~~~~~pvia~gGI~s~edi~~~~~~Ga~ 196 (217)
T cd00331 121 GMEVLV-EVHDEEELERALALGAKIIGINNRDLKT---FEVDLNTTERLAPLIPKDVILVSESGISTPEDVKRLAEAGAD 196 (217)
T ss_pred CCeEEE-EECCHHHHHHHHHcCCCEEEEeCCCccc---cCcCHHHHHHHHHhCCCCCEEEEEcCCCCHHHHHHHHHcCCC
Confidence 444433 2468888999999999999885322222 233457777777765447899999999999999999999999
Q ss_pred EEEechHHHH
Q 017718 302 GIFIGRPVVY 311 (367)
Q Consensus 302 ~V~ig~~~l~ 311 (367)
+|.+|++++.
T Consensus 197 gvivGsai~~ 206 (217)
T cd00331 197 AVLIGESLMR 206 (217)
T ss_pred EEEECHHHcC
Confidence 9999998864
|
IGPS is active as a separate monomer in most organisms, but is also found fused to other enzymes as part of a bifunctional or multifunctional enzyme involved in tryptophan biosynthesis. |
| >PRK10605 N-ethylmaleimide reductase; Provisional | Back alignment and domain information |
|---|
Probab=98.72 E-value=5.9e-06 Score=81.90 Aligned_cols=91 Identities=12% Similarity=-0.051 Sum_probs=64.5
Q ss_pred HHHHhhcC-CCEEEEec-----------CCHHH-----HHHHHHcCCcEEEEcCCCCCCCCCccc-hHHHHHHHHHHhcC
Q 017718 215 KWLQTITK-LPILVKGV-----------LTAED-----ARIAVQAGAAGIIVSNHGARQLDYVPA-TIMALEEVVKATQG 276 (367)
Q Consensus 215 ~~l~~~~~-~Pv~vK~v-----------~~~~~-----a~~~~~~G~d~i~vs~~gg~~~~~~~~-~~~~l~~i~~~~~~ 276 (367)
+.+|+.++ -+|.+|+. .+.++ ++.+.+.|+|+|.|+.. . .....+ ....-.++++.+
T Consensus 217 ~aVr~~vg~~~igvRis~~~~~~~~~~G~~~~e~~~~~~~~L~~~giD~i~vs~~-~--~~~~~~~~~~~~~~ik~~~-- 291 (362)
T PRK10605 217 DAGIAEWGADRIGIRISPLGTFNNVDNGPNEEADALYLIEQLGKRGIAYLHMSEP-D--WAGGEPYSDAFREKVRARF-- 291 (362)
T ss_pred HHHHHHcCCCeEEEEECCccccccCCCCCCHHHHHHHHHHHHHHcCCCEEEeccc-c--ccCCccccHHHHHHHHHHC--
Confidence 37777763 25888874 23333 57788899999999852 1 111111 223345566666
Q ss_pred CCcEEEecCCCCHHHHHHHHHcC-CCEEEechHHHH
Q 017718 277 RIPVFLDGGVRRGTDVFKALALG-ASGIFIGRPVVY 311 (367)
Q Consensus 277 ~~~via~GGI~~~~dv~kal~lG-Ad~V~ig~~~l~ 311 (367)
++||++.|++ +++.+.++|+-| ||+|++||+++.
T Consensus 292 ~~pv~~~G~~-~~~~ae~~i~~G~~D~V~~gR~~ia 326 (362)
T PRK10605 292 HGVIIGAGAY-TAEKAETLIGKGLIDAVAFGRDYIA 326 (362)
T ss_pred CCCEEEeCCC-CHHHHHHHHHcCCCCEEEECHHhhh
Confidence 6899999996 899999999988 999999999985
|
|
| >cd04727 pdxS PdxS is a subunit of the pyridoxal 5'-phosphate (PLP) synthase, an important enzyme in deoxyxylulose 5-phosphate (DXP)-independent pathway for de novo biosynthesis of PLP, present in some eubacteria, in archaea, fungi, plants, plasmodia, and some metazoa | Back alignment and domain information |
|---|
Probab=98.72 E-value=1.9e-07 Score=87.95 Aligned_cols=93 Identities=27% Similarity=0.364 Sum_probs=77.0
Q ss_pred HHHhhcCCCEEEEecCCHHHHHHHHHcCCcEEEEcCCCCCCC-----------------------C-------CccchHH
Q 017718 216 WLQTITKLPILVKGVLTAEDARIAVQAGAAGIIVSNHGARQL-----------------------D-------YVPATIM 265 (367)
Q Consensus 216 ~l~~~~~~Pv~vK~v~~~~~a~~~~~~G~d~i~vs~~gg~~~-----------------------~-------~~~~~~~ 265 (367)
.+|+.++.|+ +.++.+.++|.++.+.|+|.|-...+|++.- + ...+.++
T Consensus 106 ~iK~~~~~l~-MAD~stleEal~a~~~Gad~I~TTl~gyT~~~~~~~~~~~~i~~~i~~~~gyt~~t~~~~~~~~~~d~e 184 (283)
T cd04727 106 IDKHKFKVPF-VCGARNLGEALRRISEGAAMIRTKGEAGTGNVVEAVRHMRAVNGEIRKLQSMSEEELYAVAKEIQAPYE 184 (283)
T ss_pred HHHHHcCCcE-EccCCCHHHHHHHHHCCCCEEEecCCCCCCcHHHHHHHHHHHHHHHHHHhCCCHHHHHhhhcccCCCHH
Confidence 6666677666 6789999999999999999998877666532 0 1235778
Q ss_pred HHHHHHHHhcCCCcEE--EecCCCCHHHHHHHHHcCCCEEEechHHHH
Q 017718 266 ALEEVVKATQGRIPVF--LDGGVRRGTDVFKALALGASGIFIGRPVVY 311 (367)
Q Consensus 266 ~l~~i~~~~~~~~~vi--a~GGI~~~~dv~kal~lGAd~V~ig~~~l~ 311 (367)
.|.++.+.. ++||+ +.|||.+++++.+++.+||++|++|+.++.
T Consensus 185 lLk~l~~~~--~iPVV~iAeGGI~Tpena~~v~e~GAdgVaVGSAI~~ 230 (283)
T cd04727 185 LVKETAKLG--RLPVVNFAAGGVATPADAALMMQLGADGVFVGSGIFK 230 (283)
T ss_pred HHHHHHHhc--CCCeEEEEeCCCCCHHHHHHHHHcCCCEEEEcHHhhc
Confidence 899888866 79997 999999999999999999999999998864
|
Together with PdxT, PdxS forms the PLP synthase, a heteromeric glutamine amidotransferase (GATase), whereby PdxT produces ammonia from glutamine and PdxS combines ammonia with five- and three-carbon phosphosugars to form PLP. PLP is the biologically active form of vitamin B6, an essential cofactor in many biochemical processes. PdxS subunits form two hexameric rings. |
| >TIGR00343 pyridoxal 5'-phosphate synthase, synthase subunit Pdx1 | Back alignment and domain information |
|---|
Probab=98.64 E-value=3.7e-07 Score=86.06 Aligned_cols=93 Identities=27% Similarity=0.344 Sum_probs=77.2
Q ss_pred HHHhhcCCCEEEEecCCHHHHHHHHHcCCcEEEEcCCCCCCC---------------------C----------CccchH
Q 017718 216 WLQTITKLPILVKGVLTAEDARIAVQAGAAGIIVSNHGARQL---------------------D----------YVPATI 264 (367)
Q Consensus 216 ~l~~~~~~Pv~vK~v~~~~~a~~~~~~G~d~i~vs~~gg~~~---------------------~----------~~~~~~ 264 (367)
.+|+.+++|+ +.++.+.++|.++.+.|+|.|-..+.||+.- . .-.+.+
T Consensus 108 ~~K~~f~vpf-mad~~~l~EAlrai~~GadmI~Tt~e~gTg~v~~av~hlr~~~~~~~~~~~~~~~~~~~~~a~~~~~~~ 186 (287)
T TIGR00343 108 IDKKKFKVPF-VCGARDLGEALRRINEGAAMIRTKGEAGTGNIVEAVRHMRKINEEIRQIQNMLEEEDLAAVAKELRVPV 186 (287)
T ss_pred HHHHHcCCCE-EccCCCHHHHHHHHHCCCCEEeccccCCCccHHHHHHHHHHHHHHHHHHhcccchhHHhhhhcccCCCH
Confidence 5667778887 6689999999999999999999887776531 0 012567
Q ss_pred HHHHHHHHHhcCCCcEE--EecCCCCHHHHHHHHHcCCCEEEechHHHH
Q 017718 265 MALEEVVKATQGRIPVF--LDGGVRRGTDVFKALALGASGIFIGRPVVY 311 (367)
Q Consensus 265 ~~l~~i~~~~~~~~~vi--a~GGI~~~~dv~kal~lGAd~V~ig~~~l~ 311 (367)
+.|.++++.. ++||+ +.|||.|++|+.+++.+|||+|.+|+.++.
T Consensus 187 elLkei~~~~--~iPVV~fAiGGI~TPedAa~~melGAdGVaVGSaI~k 233 (287)
T TIGR00343 187 ELLLEVLKLG--KLPVVNFAAGGVATPADAALMMQLGADGVFVGSGIFK 233 (287)
T ss_pred HHHHHHHHhC--CCCEEEeccCCCCCHHHHHHHHHcCCCEEEEhHHhhc
Confidence 8888888765 79998 999999999999999999999999998864
|
This protein had been believed to be a singlet oxygen resistance protein. Subsequent work showed that it is a protein of pyridoxine (vitamin B6) biosynthesis, and that pyridoxine quenches the highly toxic singlet form of oxygen produced by light in the presence of certain chemicals. |
| >COG3010 NanE Putative N-acetylmannosamine-6-phosphate epimerase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.61 E-value=4.6e-06 Score=74.82 Aligned_cols=87 Identities=15% Similarity=0.146 Sum_probs=72.1
Q ss_pred cCCCEEEEecCCHHHHHHHHHcCCcEEEEcCCCCCC--CCCccchHHHHHHHHHHhcCCCcEEEecCCCCHHHHHHHHHc
Q 017718 221 TKLPILVKGVLTAEDARIAVQAGAAGIIVSNHGARQ--LDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALAL 298 (367)
Q Consensus 221 ~~~Pv~vK~v~~~~~a~~~~~~G~d~i~vs~~gg~~--~~~~~~~~~~l~~i~~~~~~~~~via~GGI~~~~dv~kal~l 298 (367)
...-+.+..+.+.|++..|.++|+|.|-..-+|.+. .....+.+++++++.+ . .++||+.|.+.|++++.+++.+
T Consensus 125 ~~~~l~MAD~St~ee~l~a~~~G~D~IGTTLsGYT~~~~~~~~pDf~lvk~l~~-~--~~~vIAEGr~~tP~~Ak~a~~~ 201 (229)
T COG3010 125 YPGQLAMADCSTFEEGLNAHKLGFDIIGTTLSGYTGYTEKPTEPDFQLVKQLSD-A--GCRVIAEGRYNTPEQAKKAIEI 201 (229)
T ss_pred cCCcEEEeccCCHHHHHHHHHcCCcEEecccccccCCCCCCCCCcHHHHHHHHh-C--CCeEEeeCCCCCHHHHHHHHHh
Confidence 455688999999999999999999998755445432 2234568888888876 3 7999999999999999999999
Q ss_pred CCCEEEechHHH
Q 017718 299 GASGIFIGRPVV 310 (367)
Q Consensus 299 GAd~V~ig~~~l 310 (367)
||++|.+|+++-
T Consensus 202 Ga~aVvVGsAIT 213 (229)
T COG3010 202 GADAVVVGSAIT 213 (229)
T ss_pred CCeEEEECcccC
Confidence 999999999763
|
|
| >PRK13585 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Provisional | Back alignment and domain information |
|---|
Probab=98.59 E-value=2.1e-06 Score=80.09 Aligned_cols=76 Identities=26% Similarity=0.369 Sum_probs=61.9
Q ss_pred HHHHHHHHHcCCcEEEEcCCCCCCCCCccchHHHHHHHHHHhcCCCcEEEecCCCCHHHHHHHHHcCCCEEEechHHHH
Q 017718 233 AEDARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFIGRPVVY 311 (367)
Q Consensus 233 ~~~a~~~~~~G~d~i~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~~~via~GGI~~~~dv~kal~lGAd~V~ig~~~l~ 311 (367)
.+.++.+.+.|++.|.+.+....... ....++.+.++.+.+ .+||++.|||++.+|+.+++.+||++|++|+.++.
T Consensus 152 ~~~~~~~~~~G~~~i~~~~~~~~g~~-~g~~~~~i~~i~~~~--~iPvia~GGI~~~~di~~~~~~Ga~gv~vgsa~~~ 227 (241)
T PRK13585 152 VEAAKRFEELGAGSILFTNVDVEGLL-EGVNTEPVKELVDSV--DIPVIASGGVTTLDDLRALKEAGAAGVVVGSALYK 227 (241)
T ss_pred HHHHHHHHHcCCCEEEEEeecCCCCc-CCCCHHHHHHHHHhC--CCCEEEeCCCCCHHHHHHHHHcCCCEEEEEHHHhc
Confidence 46688999999999998653111111 235788899998877 79999999999999999998999999999998875
|
|
| >PRK00278 trpC indole-3-glycerol-phosphate synthase; Reviewed | Back alignment and domain information |
|---|
Probab=98.59 E-value=1.4e-06 Score=82.57 Aligned_cols=166 Identities=18% Similarity=0.197 Sum_probs=97.5
Q ss_pred HHHHHHHHHHcCCcEEEEecCCCCCCchhHHhhh---hcCCCCccccccccccccCccccc--cchhhHHHhhhccCccc
Q 017718 138 VAQLVRRAERAGFKAIALTVDTPRLGRREADIKN---RFTLPPFLTLKNFQGLDLGKMDEA--NDSGLAAYVAGQIDRSL 212 (367)
Q Consensus 138 ~~~~l~ra~~~G~~ai~itvd~p~~g~r~~~~~~---~~~~p~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~d~~~ 212 (367)
..++++..++.|+.++-+..|....+.-..+++. ...+|- ..+++.-.. ...... .++... ++....-+.-
T Consensus 72 ~~~~A~~~~~~GA~aisvlte~~~f~g~~~~l~~v~~~v~iPv--l~kdfi~~~-~qi~~a~~~GAD~V-lLi~~~l~~~ 147 (260)
T PRK00278 72 PVEIAKAYEAGGAACLSVLTDERFFQGSLEYLRAARAAVSLPV--LRKDFIIDP-YQIYEARAAGADAI-LLIVAALDDE 147 (260)
T ss_pred HHHHHHHHHhCCCeEEEEecccccCCCCHHHHHHHHHhcCCCE--EeeeecCCH-HHHHHHHHcCCCEE-EEEeccCCHH
Confidence 3467788888999999888877665555544432 222331 112211000 000000 000000 0111000111
Q ss_pred cHH-HHH--hhcCCCEEEEecCCHHHHHHHHHcCCcEEEEcCCCCCCCCCccchHHHHHHHHHHhcCCCcEEEecCCCCH
Q 017718 213 SWK-WLQ--TITKLPILVKGVLTAEDARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRG 289 (367)
Q Consensus 213 ~~~-~l~--~~~~~Pv~vK~v~~~~~a~~~~~~G~d~i~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~~~via~GGI~~~ 289 (367)
+.+ .++ +..++-+++ .+.+.++++++.++|+|.|.+.| +.+..-....+...++.+.+++..++|+.|||.++
T Consensus 148 ~l~~li~~a~~lGl~~lv-evh~~~E~~~A~~~gadiIgin~---rdl~~~~~d~~~~~~l~~~~p~~~~vIaegGI~t~ 223 (260)
T PRK00278 148 QLKELLDYAHSLGLDVLV-EVHDEEELERALKLGAPLIGINN---RNLKTFEVDLETTERLAPLIPSDRLVVSESGIFTP 223 (260)
T ss_pred HHHHHHHHHHHcCCeEEE-EeCCHHHHHHHHHcCCCEEEECC---CCcccccCCHHHHHHHHHhCCCCCEEEEEeCCCCH
Confidence 222 111 223555443 56788899999999999888743 33333334466667777666545799999999999
Q ss_pred HHHHHHHHcCCCEEEechHHHH
Q 017718 290 TDVFKALALGASGIFIGRPVVY 311 (367)
Q Consensus 290 ~dv~kal~lGAd~V~ig~~~l~ 311 (367)
+|+.+++.+|||+|.+|+.++.
T Consensus 224 ed~~~~~~~Gad~vlVGsaI~~ 245 (260)
T PRK00278 224 EDLKRLAKAGADAVLVGESLMR 245 (260)
T ss_pred HHHHHHHHcCCCEEEECHHHcC
Confidence 9999999999999999998874
|
|
| >PRK07695 transcriptional regulator TenI; Provisional | Back alignment and domain information |
|---|
Probab=98.58 E-value=4.4e-06 Score=75.94 Aligned_cols=92 Identities=22% Similarity=0.229 Sum_probs=67.9
Q ss_pred HHHhhc-CCCEEEEecCCHHHHHHHHHcCCcEEEEcCCCCCC-CC-CccchHHHHHHHHHHhcCCCcEEEecCCCCHHHH
Q 017718 216 WLQTIT-KLPILVKGVLTAEDARIAVQAGAAGIIVSNHGARQ-LD-YVPATIMALEEVVKATQGRIPVFLDGGVRRGTDV 292 (367)
Q Consensus 216 ~l~~~~-~~Pv~vK~v~~~~~a~~~~~~G~d~i~vs~~gg~~-~~-~~~~~~~~l~~i~~~~~~~~~via~GGI~~~~dv 292 (367)
.+|+.. +..|.+ .+.+.++++.+.+.|+|+|.++.-..+. .. ..+..++.++++.+.+ ++||++.||| +.+++
T Consensus 88 ~~r~~~~~~~ig~-s~~s~e~a~~a~~~Gadyi~~g~v~~t~~k~~~~~~g~~~l~~~~~~~--~ipvia~GGI-~~~~~ 163 (201)
T PRK07695 88 SVREKFPYLHVGY-SVHSLEEAIQAEKNGADYVVYGHVFPTDCKKGVPARGLEELSDIARAL--SIPVIAIGGI-TPENT 163 (201)
T ss_pred HHHHhCCCCEEEE-eCCCHHHHHHHHHcCCCEEEECCCCCCCCCCCCCCCCHHHHHHHHHhC--CCCEEEEcCC-CHHHH
Confidence 455444 334544 4678899999999999999775322221 11 1223567778877665 7999999999 99999
Q ss_pred HHHHHcCCCEEEechHHHH
Q 017718 293 FKALALGASGIFIGRPVVY 311 (367)
Q Consensus 293 ~kal~lGAd~V~ig~~~l~ 311 (367)
.+++.+||++|++++.+..
T Consensus 164 ~~~~~~Ga~gvav~s~i~~ 182 (201)
T PRK07695 164 RDVLAAGVSGIAVMSGIFS 182 (201)
T ss_pred HHHHHcCCCEEEEEHHHhc
Confidence 9999999999999998875
|
|
| >TIGR00262 trpA tryptophan synthase, alpha subunit | Back alignment and domain information |
|---|
Probab=98.55 E-value=1.2e-05 Score=75.99 Aligned_cols=49 Identities=20% Similarity=0.370 Sum_probs=41.4
Q ss_pred hHHHHHHHHHHhcCCCcEEEecCCCCHHHHHHHHHcCCCEEEechHHHHHh
Q 017718 263 TIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFIGRPVVYSL 313 (367)
Q Consensus 263 ~~~~l~~i~~~~~~~~~via~GGI~~~~dv~kal~lGAd~V~ig~~~l~~l 313 (367)
..+.+.++++.. +.||++.|||++++++.+++..|||+|.+|++++.-+
T Consensus 186 ~~~~i~~lr~~~--~~pi~vgfGI~~~e~~~~~~~~GADgvVvGSaiv~~~ 234 (256)
T TIGR00262 186 LNELVKRLKAYS--AKPVLVGFGISKPEQVKQAIDAGADGVIVGSAIVKII 234 (256)
T ss_pred HHHHHHHHHhhc--CCCEEEeCCCCCHHHHHHHHHcCCCEEEECHHHHHHH
Confidence 345666666654 6799999999999999999999999999999987654
|
Tryptophan synthase catalyzes the last step in the biosynthesis of tryptophan. The alpha chain is responsible for the aldol cleavage of indoleglycerol phosphate to indole and glyceraldehyde 3-phosphate. In bacteria and plants each domain is found on a separate subunit (alpha and beta chains), while in fungi the two domains are fused together on a single multifunctional protein. The signature pattern for trpA contains three conserved acidic residues. [LIVM]-E-[LIVM]-G-x(2)-[FYC]-[ST]-[DE]-[PA]-[LIVMY]-[AGLI]-[DE]-G and this is located between residues 43-58 of the model. The Sulfolobus solfataricus trpA is known to be quite divergent from other known trpA sequences. |
| >PRK13125 trpA tryptophan synthase subunit alpha; Provisional | Back alignment and domain information |
|---|
Probab=98.52 E-value=1.6e-05 Score=74.62 Aligned_cols=96 Identities=14% Similarity=0.087 Sum_probs=65.1
Q ss_pred HHHhhcCCCEEEEec--CCHHHHHHHHHcCCcEEEEcCCCCCCCCCccchHHHHHHHHHHhcCCCcEEEecCCCCHHHHH
Q 017718 216 WLQTITKLPILVKGV--LTAEDARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVF 293 (367)
Q Consensus 216 ~l~~~~~~Pv~vK~v--~~~~~a~~~~~~G~d~i~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~~~via~GGI~~~~dv~ 293 (367)
.+++ .++..++-.. .+.+..+...+..-..+.++-.+|+.........+.+.++++... +.||+++|||++++++.
T Consensus 124 ~~~~-~Gl~~~~~v~p~T~~e~l~~~~~~~~~~l~msv~~~~g~~~~~~~~~~i~~lr~~~~-~~~i~v~gGI~~~e~i~ 201 (244)
T PRK13125 124 IIKN-KGLKPVFFTSPKFPDLLIHRLSKLSPLFIYYGLRPATGVPLPVSVERNIKRVRNLVG-NKYLVVGFGLDSPEDAR 201 (244)
T ss_pred HHHH-cCCCEEEEECCCCCHHHHHHHHHhCCCEEEEEeCCCCCCCchHHHHHHHHHHHHhcC-CCCEEEeCCcCCHHHHH
Confidence 4443 4555555443 346777887777655565553444322222334456777766543 57899999999999999
Q ss_pred HHHHcCCCEEEechHHHHHh
Q 017718 294 KALALGASGIFIGRPVVYSL 313 (367)
Q Consensus 294 kal~lGAd~V~ig~~~l~~l 313 (367)
+++..|||++.+||.++.-+
T Consensus 202 ~~~~~gaD~vvvGSai~~~~ 221 (244)
T PRK13125 202 DALSAGADGVVVGTAFIEEL 221 (244)
T ss_pred HHHHcCCCEEEECHHHHHHH
Confidence 99999999999999887543
|
|
| >PRK04180 pyridoxal biosynthesis lyase PdxS; Provisional | Back alignment and domain information |
|---|
Probab=98.52 E-value=1.5e-06 Score=82.23 Aligned_cols=93 Identities=26% Similarity=0.349 Sum_probs=75.8
Q ss_pred HHHhhcCCCEEEEecCCHHHHHHHHHcCCcEEEEcCCCCCC------------------CC------------CccchHH
Q 017718 216 WLQTITKLPILVKGVLTAEDARIAVQAGAAGIIVSNHGARQ------------------LD------------YVPATIM 265 (367)
Q Consensus 216 ~l~~~~~~Pv~vK~v~~~~~a~~~~~~G~d~i~vs~~gg~~------------------~~------------~~~~~~~ 265 (367)
.+|+.+++|+ +.++.+.++|.++.+.|+|.|-..+..|+. +. .-.+.++
T Consensus 115 ~~K~~f~~~f-mad~~~l~EAlrai~~GadmI~Ttge~gtg~v~~av~h~r~~~~~i~~L~gyt~~~~~~~a~~~~~~~e 193 (293)
T PRK04180 115 IDKWDFTVPF-VCGARNLGEALRRIAEGAAMIRTKGEAGTGNVVEAVRHMRQINGEIRRLTSMSEDELYTAAKELQAPYE 193 (293)
T ss_pred HHHHHcCCCE-EccCCCHHHHHHHHHCCCCeeeccCCCCCccHHHHHHHHHHHHHHHHHHhCCCHHHHHhhccccCCCHH
Confidence 6677778887 568899999999999999999887544431 00 0235678
Q ss_pred HHHHHHHHhcCCCcEE--EecCCCCHHHHHHHHHcCCCEEEechHHHH
Q 017718 266 ALEEVVKATQGRIPVF--LDGGVRRGTDVFKALALGASGIFIGRPVVY 311 (367)
Q Consensus 266 ~l~~i~~~~~~~~~vi--a~GGI~~~~dv~kal~lGAd~V~ig~~~l~ 311 (367)
.|.++++.. ++||+ +.|||.|++|+.+++.+||++|++|+.++.
T Consensus 194 lL~ei~~~~--~iPVV~~AeGGI~TPedaa~vme~GAdgVaVGSaI~k 239 (293)
T PRK04180 194 LVKEVAELG--RLPVVNFAAGGIATPADAALMMQLGADGVFVGSGIFK 239 (293)
T ss_pred HHHHHHHhC--CCCEEEEEeCCCCCHHHHHHHHHhCCCEEEEcHHhhc
Confidence 888888865 79998 999999999999999999999999998864
|
|
| >PF00724 Oxidored_FMN: NADH:flavin oxidoreductase / NADH oxidase family; InterPro: IPR001155 The TIM-barrel fold is a closed barrel structure composed of an eight-fold repeat of beta-alpha units, where the eight parallel beta strands on the inside are covered by the eight alpha helices on the outside [] | Back alignment and domain information |
|---|
Probab=98.50 E-value=1e-05 Score=79.66 Aligned_cols=94 Identities=27% Similarity=0.324 Sum_probs=67.9
Q ss_pred HHHhhc--CCCEEEEecCC---------HH---HHHHHHHcCCcEEEEcCCCCC------C-CCC--cc-chHHHHHHHH
Q 017718 216 WLQTIT--KLPILVKGVLT---------AE---DARIAVQAGAAGIIVSNHGAR------Q-LDY--VP-ATIMALEEVV 271 (367)
Q Consensus 216 ~l~~~~--~~Pv~vK~v~~---------~~---~a~~~~~~G~d~i~vs~~gg~------~-~~~--~~-~~~~~l~~i~ 271 (367)
.+|+.. +.||.+|+... .+ .++.+.++|+|.+.++..... . ... .+ ...+....++
T Consensus 208 aIr~~vg~d~~v~~Rls~~~~~~~g~~~~e~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~ik 287 (341)
T PF00724_consen 208 AIREAVGPDFPVGVRLSPDDFVEGGITLEETIEIAKLLEELGVDFLDVSHGSYVHWSEPRPSPPFDFEPGYNLDLAEAIK 287 (341)
T ss_dssp HHHHHHTGGGEEEEEEETTCSSTTSHHSHHHHHHHHHHHHHHHTTEEEEEESEEEEEBTSSTTTTTTTTTTTHHHHHHHH
T ss_pred HHHHHhcCCceEEEEEeeecccCCCCchHHHHHHHHHHHHHhhhhccccccccccccccccccccccccchhhhhhhhhh
Confidence 777776 57899999721 12 267889999999877532111 0 011 11 1234556666
Q ss_pred HHhcCCCcEEEecCCCCHHHHHHHHHcC-CCEEEechHHHH
Q 017718 272 KATQGRIPVFLDGGVRRGTDVFKALALG-ASGIFIGRPVVY 311 (367)
Q Consensus 272 ~~~~~~~~via~GGI~~~~dv~kal~lG-Ad~V~ig~~~l~ 311 (367)
+.+ ++|||+.|||++++.+.++++.| ||+|.+||+++.
T Consensus 288 ~~~--~~pvi~~G~i~~~~~ae~~l~~g~~DlV~~gR~~la 326 (341)
T PF00724_consen 288 KAV--KIPVIGVGGIRTPEQAEKALEEGKADLVAMGRPLLA 326 (341)
T ss_dssp HHH--SSEEEEESSTTHHHHHHHHHHTTSTSEEEESHHHHH
T ss_pred hhc--CceEEEEeeecchhhhHHHHhcCCceEeeccHHHHh
Confidence 666 79999999999999999999987 999999999986
|
It is a widely distributed fold which has been found in many enzyme families that catalyse completely unrelated reactions []. The active site is always found at the C-terminal end of this domain. Proteins in this entry are a variety of NADH:flavin oxidoreductase/NADH oxidase enzymes, found mostly in bacteria or fungi, that contain a TIM-barrel fold. They commonly use FMN/FAD as cofactor and include: dimethylamine dehydrogenase trimethylamine dehydrogenase 12-oxophytodienoate reductase NADPH dehydrogenase NADH oxidase ; GO: 0010181 FMN binding, 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 3GKA_B 3P67_A 3F03_K 2ABA_A 1VYR_A 1GVO_A 3KFT_B 3P8I_A 1GVQ_A 3P74_A .... |
| >PRK09140 2-dehydro-3-deoxy-6-phosphogalactonate aldolase; Reviewed | Back alignment and domain information |
|---|
Probab=98.47 E-value=1e-05 Score=73.95 Aligned_cols=170 Identities=16% Similarity=0.184 Sum_probs=104.5
Q ss_pred EEEeecCCHHHHHHHHHHHHHcCCcEEEEecCCCCCCchhHHhhhhcCCCCccccccccccccCccccccchhhHHHhhh
Q 017718 127 FQLYVYKDRNVVAQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLTLKNFQGLDLGKMDEANDSGLAAYVAG 206 (367)
Q Consensus 127 ~QLy~~~d~~~~~~~l~ra~~~G~~ai~itvd~p~~g~r~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 206 (367)
+=+....+.+...++++.+.+.|++.+-+|.+.|..-..-+.++..+.-+-.+....+...+ .. +.......+++.
T Consensus 13 ~~v~r~~~~~~~~~~~~a~~~gGi~~iEvt~~~~~~~~~i~~l~~~~~~~~~iGaGTV~~~~--~~-~~a~~aGA~fiv- 88 (206)
T PRK09140 13 IAILRGITPDEALAHVGALIEAGFRAIEIPLNSPDPFDSIAALVKALGDRALIGAGTVLSPE--QV-DRLADAGGRLIV- 88 (206)
T ss_pred EEEEeCCCHHHHHHHHHHHHHCCCCEEEEeCCCccHHHHHHHHHHHcCCCcEEeEEecCCHH--HH-HHHHHcCCCEEE-
Confidence 33444677888888888888999999999988886433345555544211000000000000 00 000000001111
Q ss_pred ccCccccHH--HHHhhcCCCEEEEecCCHHHHHHHHHcCCcEEEEcCCCCCCCCCccchHHHHHHHHHHhcCCCcEEEec
Q 017718 207 QIDRSLSWK--WLQTITKLPILVKGVLTAEDARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDG 284 (367)
Q Consensus 207 ~~d~~~~~~--~l~~~~~~Pv~vK~v~~~~~a~~~~~~G~d~i~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~~~via~G 284 (367)
-|.++-+ ..+...+.|+++ ++.+++++..+.+.|+|+|.+.- ......+.+.++++.++.++|+++.|
T Consensus 89 --sp~~~~~v~~~~~~~~~~~~~-G~~t~~E~~~A~~~Gad~vk~Fp-------a~~~G~~~l~~l~~~~~~~ipvvaiG 158 (206)
T PRK09140 89 --TPNTDPEVIRRAVALGMVVMP-GVATPTEAFAALRAGAQALKLFP-------ASQLGPAGIKALRAVLPPDVPVFAVG 158 (206)
T ss_pred --CCCCCHHHHHHHHHCCCcEEc-ccCCHHHHHHHHHcCCCEEEECC-------CCCCCHHHHHHHHhhcCCCCeEEEEC
Confidence 1122222 333345667655 58999999999999999999842 11223566666666553369999999
Q ss_pred CCCCHHHHHHHHHcCCCEEEechHHHH
Q 017718 285 GVRRGTDVFKALALGASGIFIGRPVVY 311 (367)
Q Consensus 285 GI~~~~dv~kal~lGAd~V~ig~~~l~ 311 (367)
|| +.+++...+++||++|.+++.++.
T Consensus 159 GI-~~~n~~~~~~aGa~~vav~s~l~~ 184 (206)
T PRK09140 159 GV-TPENLAPYLAAGAAGFGLGSALYR 184 (206)
T ss_pred CC-CHHHHHHHHHCCCeEEEEehHhcc
Confidence 99 889999999999999999998864
|
|
| >PRK06552 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional | Back alignment and domain information |
|---|
Probab=98.46 E-value=8e-06 Score=75.08 Aligned_cols=170 Identities=15% Similarity=0.175 Sum_probs=108.6
Q ss_pred EEEEeecCCHHHHHHHHHHHHHcCCcEEEEecCCCCCCchhHHhhhhcCCCCcccc--ccccccccCccccccchhhHHH
Q 017718 126 FFQLYVYKDRNVVAQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLTL--KNFQGLDLGKMDEANDSGLAAY 203 (367)
Q Consensus 126 ~~QLy~~~d~~~~~~~l~ra~~~G~~ai~itvd~p~~g~r~~~~~~~~~~p~~~~~--~~~~~~~~~~~~~~~~~~~~~~ 203 (367)
.+-+....+.+....+++.+.+.|+..+-||+++|..-.-.+.++..+.-.+++.. ......+ .. +......+++
T Consensus 15 vi~vir~~~~~~a~~~~~al~~~Gi~~iEit~~~~~a~~~i~~l~~~~~~~p~~~vGaGTV~~~~--~~-~~a~~aGA~F 91 (213)
T PRK06552 15 VVAVVRGESKEEALKISLAVIKGGIKAIEVTYTNPFASEVIKELVELYKDDPEVLIGAGTVLDAV--TA-RLAILAGAQF 91 (213)
T ss_pred EEEEEECCCHHHHHHHHHHHHHCCCCEEEEECCCccHHHHHHHHHHHcCCCCCeEEeeeeCCCHH--HH-HHHHHcCCCE
Confidence 45555577889999999999999999999999998754445566655421011111 0000000 00 0000011111
Q ss_pred hhhccCccccHH--HHHhhcCCCEEEEecCCHHHHHHHHHcCCcEEEEcCCCCCCCCCccchHHHHHHHHHHhcCCCcEE
Q 017718 204 VAGQIDRSLSWK--WLQTITKLPILVKGVLTAEDARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVF 281 (367)
Q Consensus 204 ~~~~~d~~~~~~--~l~~~~~~Pv~vK~v~~~~~a~~~~~~G~d~i~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~~~vi 281 (367)
+. .|.++-+ ......++|++- ++.++.++..+.++|+|+|-+.- ......+.++.++..++ .+|++
T Consensus 92 iv---sP~~~~~v~~~~~~~~i~~iP-G~~T~~E~~~A~~~Gad~vklFP-------a~~~G~~~ik~l~~~~p-~ip~~ 159 (213)
T PRK06552 92 IV---SPSFNRETAKICNLYQIPYLP-GCMTVTEIVTALEAGSEIVKLFP-------GSTLGPSFIKAIKGPLP-QVNVM 159 (213)
T ss_pred EE---CCCCCHHHHHHHHHcCCCEEC-CcCCHHHHHHHHHcCCCEEEECC-------cccCCHHHHHHHhhhCC-CCEEE
Confidence 11 1222222 223345888855 88999999999999999999842 11112445666655553 69999
Q ss_pred EecCCCCHHHHHHHHHcCCCEEEechHHHH
Q 017718 282 LDGGVRRGTDVFKALALGASGIFIGRPVVY 311 (367)
Q Consensus 282 a~GGI~~~~dv~kal~lGAd~V~ig~~~l~ 311 (367)
+.|||. .+++.+++++||++|.+|+.++-
T Consensus 160 atGGI~-~~N~~~~l~aGa~~vavgs~l~~ 188 (213)
T PRK06552 160 VTGGVN-LDNVKDWFAAGADAVGIGGELNK 188 (213)
T ss_pred EECCCC-HHHHHHHHHCCCcEEEEchHHhC
Confidence 999997 69999999999999999998853
|
|
| >PRK14024 phosphoribosyl isomerase A; Provisional | Back alignment and domain information |
|---|
Probab=98.45 E-value=9e-07 Score=82.87 Aligned_cols=77 Identities=25% Similarity=0.284 Sum_probs=63.1
Q ss_pred HHHHHHHHHcCCcEEEEcCCCCCCCCCccchHHHHHHHHHHhcCCCcEEEecCCCCHHHHHHHHHc---CCCEEEechHH
Q 017718 233 AEDARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALAL---GASGIFIGRPV 309 (367)
Q Consensus 233 ~~~a~~~~~~G~d~i~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~~~via~GGI~~~~dv~kal~l---GAd~V~ig~~~ 309 (367)
.+.++.+.+.|++.+++.+...-+...|+ .++.+.++.+.+ ++|||++|||++.+|+.+++.+ |||+|++||++
T Consensus 149 ~~~~~~l~~~G~~~iiv~~~~~~g~~~G~-d~~~i~~i~~~~--~ipviasGGi~s~~D~~~l~~~~~~GvdgV~igra~ 225 (241)
T PRK14024 149 WEVLERLDSAGCSRYVVTDVTKDGTLTGP-NLELLREVCART--DAPVVASGGVSSLDDLRALAELVPLGVEGAIVGKAL 225 (241)
T ss_pred HHHHHHHHhcCCCEEEEEeecCCCCccCC-CHHHHHHHHhhC--CCCEEEeCCCCCHHHHHHHhhhccCCccEEEEeHHH
Confidence 35688899999999999653322333454 899999998876 7999999999999999998754 99999999999
Q ss_pred HHH
Q 017718 310 VYS 312 (367)
Q Consensus 310 l~~ 312 (367)
+.+
T Consensus 226 ~~g 228 (241)
T PRK14024 226 YAG 228 (241)
T ss_pred HcC
Confidence 863
|
|
| >cd04731 HisF The cyclase subunit of imidazoleglycerol phosphate synthase (HisF) | Back alignment and domain information |
|---|
Probab=98.42 E-value=1.5e-06 Score=81.23 Aligned_cols=77 Identities=19% Similarity=0.257 Sum_probs=61.1
Q ss_pred HHHHHHHHHcCCcEEEEcCCCCCCCCCccchHHHHHHHHHHhcCCCcEEEecCCCCHHHHHHHHHc-CCCEEEechHHHH
Q 017718 233 AEDARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALAL-GASGIFIGRPVVY 311 (367)
Q Consensus 233 ~~~a~~~~~~G~d~i~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~~~via~GGI~~~~dv~kal~l-GAd~V~ig~~~l~ 311 (367)
.+.++.+.+.|+|+|++++-..... .....++.+.++.+.+ ++|||++|||++.+|+.+++.. |||+|++||++..
T Consensus 152 ~~~~~~l~~~G~d~i~v~~i~~~g~-~~g~~~~~i~~i~~~~--~~pvia~GGi~~~~di~~~l~~~g~dgv~vg~al~~ 228 (243)
T cd04731 152 VEWAKEVEELGAGEILLTSMDRDGT-KKGYDLELIRAVSSAV--NIPVIASGGAGKPEHFVEAFEEGGADAALAASIFHF 228 (243)
T ss_pred HHHHHHHHHCCCCEEEEeccCCCCC-CCCCCHHHHHHHHhhC--CCCEEEeCCCCCHHHHHHHHHhCCCCEEEEeHHHHc
Confidence 4667889999999999965211001 1123678888887766 8999999999999999999997 9999999999986
Q ss_pred H
Q 017718 312 S 312 (367)
Q Consensus 312 ~ 312 (367)
+
T Consensus 229 ~ 229 (243)
T cd04731 229 G 229 (243)
T ss_pred C
Confidence 3
|
Imidazole glycerol phosphate synthase (IGPS) catalyzes the fifth step of histidine biosynthesis, the formation of the imidazole ring. IGPS converts N1-(5'-phosphoribulosyl)-formimino-5-aminoimidazole-4-carboxamide ribonucleotide (PRFAR) to imidazole glycerol phosphate (ImGP) and 5'-(5-aminoimidazole-4-carboxamide) ribonucleotide (AICAR). This conversion involves two tightly coupled reactions in distinct active sites of IGPS. The two catalytic domains can be fused, like in fungi and plants, or peformed by a heterodimer (HisH-glutaminase and HisF-cyclase), like in bacteria. |
| >PRK01033 imidazole glycerol phosphate synthase subunit HisF; Provisional | Back alignment and domain information |
|---|
Probab=98.42 E-value=8.6e-07 Score=83.84 Aligned_cols=77 Identities=23% Similarity=0.261 Sum_probs=63.6
Q ss_pred HHHHHHHHHcCCcEEEEcCCCCCCCCCccchHHHHHHHHHHhcCCCcEEEecCCCCHHHHHHHH-HcCCCEEEechHHHH
Q 017718 233 AEDARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKAL-ALGASGIFIGRPVVY 311 (367)
Q Consensus 233 ~~~a~~~~~~G~d~i~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~~~via~GGI~~~~dv~kal-~lGAd~V~ig~~~l~ 311 (367)
.+.++.+.+.|++.+++.+-..-+...| +.++.+.++.+.+ ++|||++|||++.+|+.+++ ..|+++|.+|++|.|
T Consensus 155 ~e~~~~~~~~g~~~ii~~~i~~~G~~~G-~d~~~i~~~~~~~--~ipvIasGGv~s~eD~~~l~~~~GvdgVivg~a~~~ 231 (258)
T PRK01033 155 LELAKEYEALGAGEILLNSIDRDGTMKG-YDLELLKSFRNAL--KIPLIALGGAGSLDDIVEAILNLGADAAAAGSLFVF 231 (258)
T ss_pred HHHHHHHHHcCCCEEEEEccCCCCCcCC-CCHHHHHHHHhhC--CCCEEEeCCCCCHHHHHHHHHHCCCCEEEEcceeee
Confidence 3667889999999999964322122344 4888999998876 79999999999999999999 799999999999998
Q ss_pred H
Q 017718 312 S 312 (367)
Q Consensus 312 ~ 312 (367)
.
T Consensus 232 ~ 232 (258)
T PRK01033 232 K 232 (258)
T ss_pred C
Confidence 3
|
|
| >cd04728 ThiG Thiazole synthase (ThiG) is the tetrameric enzyme that is involved in the formation of the thiazole moiety of thiamin pyrophosphate, an essential ubiquitous cofactor that plays an important role in carbohydrate and amino acid metabolism | Back alignment and domain information |
|---|
Probab=98.40 E-value=1.3e-06 Score=80.94 Aligned_cols=79 Identities=18% Similarity=0.250 Sum_probs=63.7
Q ss_pred ecCCHHHHHHHHHcCCcEEEEcCC-CCCCCCCccchHHHHHHHHHHhcCCCcEEEecCCCCHHHHHHHHHcCCCEEEech
Q 017718 229 GVLTAEDARIAVQAGAAGIIVSNH-GARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFIGR 307 (367)
Q Consensus 229 ~v~~~~~a~~~~~~G~d~i~vs~~-gg~~~~~~~~~~~~l~~i~~~~~~~~~via~GGI~~~~dv~kal~lGAd~V~ig~ 307 (367)
...++..|+++.++|++.|-.-+. -|+. .|....+.|..+++.. ++|||++|||.+++|+.+++.+|||+|++|+
T Consensus 130 c~dd~~~ar~l~~~G~~~vmPlg~pIGsg--~Gi~~~~~I~~I~e~~--~vpVI~egGI~tpeda~~AmelGAdgVlV~S 205 (248)
T cd04728 130 CTDDPVLAKRLEDAGCAAVMPLGSPIGSG--QGLLNPYNLRIIIERA--DVPVIVDAGIGTPSDAAQAMELGADAVLLNT 205 (248)
T ss_pred eCCCHHHHHHHHHcCCCEeCCCCcCCCCC--CCCCCHHHHHHHHHhC--CCcEEEeCCCCCHHHHHHHHHcCCCEEEECh
Confidence 347899999999999999955211 1111 2556688888887764 7999999999999999999999999999999
Q ss_pred HHHH
Q 017718 308 PVVY 311 (367)
Q Consensus 308 ~~l~ 311 (367)
++..
T Consensus 206 AIt~ 209 (248)
T cd04728 206 AIAK 209 (248)
T ss_pred HhcC
Confidence 8863
|
ThiG catalyzes the formation of thiazole from 1-deoxy-D-xylulose 5-phosphate (DXP) and dehydroglycine, with the help of the sulfur carrier protein ThiS that carries the sulfur needed for thiazole assembly on its carboxy terminus (ThiS-COSH). |
| >PRK02083 imidazole glycerol phosphate synthase subunit HisF; Provisional | Back alignment and domain information |
|---|
Probab=98.40 E-value=3.1e-06 Score=79.75 Aligned_cols=77 Identities=18% Similarity=0.223 Sum_probs=61.8
Q ss_pred HHHHHHHHHcCCcEEEEcCCCCCCCCCccchHHHHHHHHHHhcCCCcEEEecCCCCHHHHHHHHHc-CCCEEEechHHHH
Q 017718 233 AEDARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALAL-GASGIFIGRPVVY 311 (367)
Q Consensus 233 ~~~a~~~~~~G~d~i~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~~~via~GGI~~~~dv~kal~l-GAd~V~ig~~~l~ 311 (367)
.+.++.+.+.|++.++++++.......+ ..++.+.++.+.. ++|||++|||++.+|+.+++.. ||++|++|+++.+
T Consensus 156 ~~~~~~~~~~g~~~ii~~~i~~~g~~~g-~d~~~i~~~~~~~--~ipvia~GGv~s~~d~~~~~~~~G~~gvivg~al~~ 232 (253)
T PRK02083 156 VEWAKEVEELGAGEILLTSMDRDGTKNG-YDLELTRAVSDAV--NVPVIASGGAGNLEHFVEAFTEGGADAALAASIFHF 232 (253)
T ss_pred HHHHHHHHHcCCCEEEEcCCcCCCCCCC-cCHHHHHHHHhhC--CCCEEEECCCCCHHHHHHHHHhCCccEEeEhHHHHc
Confidence 3567889999999999976432111123 3688888888776 7999999999999999999974 9999999999876
Q ss_pred H
Q 017718 312 S 312 (367)
Q Consensus 312 ~ 312 (367)
+
T Consensus 233 ~ 233 (253)
T PRK02083 233 G 233 (253)
T ss_pred C
Confidence 3
|
|
| >CHL00200 trpA tryptophan synthase alpha subunit; Provisional | Back alignment and domain information |
|---|
Probab=98.39 E-value=5.9e-05 Score=71.51 Aligned_cols=46 Identities=26% Similarity=0.398 Sum_probs=38.5
Q ss_pred HHHHHHHHhcCCCcEEEecCCCCHHHHHHHHHcCCCEEEechHHHHHh
Q 017718 266 ALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFIGRPVVYSL 313 (367)
Q Consensus 266 ~l~~i~~~~~~~~~via~GGI~~~~dv~kal~lGAd~V~ig~~~l~~l 313 (367)
.+..+++.. +.||...+||++++++.++...|||+|.+|++++.-+
T Consensus 193 ~i~~ir~~t--~~Pi~vGFGI~~~e~~~~~~~~GADGvVVGSalv~~i 238 (263)
T CHL00200 193 LIETIKKMT--NKPIILGFGISTSEQIKQIKGWNINGIVIGSACVQIL 238 (263)
T ss_pred HHHHHHHhc--CCCEEEECCcCCHHHHHHHHhcCCCEEEECHHHHHHH
Confidence 344444433 7999999999999999999999999999999997644
|
|
| >PRK00208 thiG thiazole synthase; Reviewed | Back alignment and domain information |
|---|
Probab=98.36 E-value=1.8e-06 Score=80.05 Aligned_cols=79 Identities=18% Similarity=0.264 Sum_probs=63.0
Q ss_pred ecCCHHHHHHHHHcCCcEEEEcCC-CCCCCCCccchHHHHHHHHHHhcCCCcEEEecCCCCHHHHHHHHHcCCCEEEech
Q 017718 229 GVLTAEDARIAVQAGAAGIIVSNH-GARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFIGR 307 (367)
Q Consensus 229 ~v~~~~~a~~~~~~G~d~i~vs~~-gg~~~~~~~~~~~~l~~i~~~~~~~~~via~GGI~~~~dv~kal~lGAd~V~ig~ 307 (367)
...++..++++.++|++.|-.-+. -|+. .|....+.+..+++.. ++|||++|||.+++|+.+++.+|||+|++++
T Consensus 130 c~~d~~~ak~l~~~G~~~vmPlg~pIGsg--~gi~~~~~i~~i~e~~--~vpVIveaGI~tpeda~~AmelGAdgVlV~S 205 (250)
T PRK00208 130 CTDDPVLAKRLEEAGCAAVMPLGAPIGSG--LGLLNPYNLRIIIEQA--DVPVIVDAGIGTPSDAAQAMELGADAVLLNT 205 (250)
T ss_pred eCCCHHHHHHHHHcCCCEeCCCCcCCCCC--CCCCCHHHHHHHHHhc--CCeEEEeCCCCCHHHHHHHHHcCCCEEEECh
Confidence 347899999999999999955211 1111 2455677788887764 7999999999999999999999999999999
Q ss_pred HHHH
Q 017718 308 PVVY 311 (367)
Q Consensus 308 ~~l~ 311 (367)
++..
T Consensus 206 AItk 209 (250)
T PRK00208 206 AIAV 209 (250)
T ss_pred HhhC
Confidence 8863
|
|
| >cd00452 KDPG_aldolase KDPG and KHG aldolase | Back alignment and domain information |
|---|
Probab=98.35 E-value=8.5e-06 Score=73.50 Aligned_cols=168 Identities=16% Similarity=0.151 Sum_probs=99.2
Q ss_pred EEEeecCCHHHHHHHHHHHHHcCCcEEEEecCCCCCCchhHHhhhhcCCCC-ccccccccccccCccccccchhhHHHhh
Q 017718 127 FQLYVYKDRNVVAQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFTLPP-FLTLKNFQGLDLGKMDEANDSGLAAYVA 205 (367)
Q Consensus 127 ~QLy~~~d~~~~~~~l~ra~~~G~~ai~itvd~p~~g~r~~~~~~~~~~p~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 205 (367)
+-++...+.+...++++.+.+.|++.+.++...+..-.--+.++..+ |. .+...++... ..... .......++.
T Consensus 7 ~~i~r~~~~~~~~~~~~~l~~~G~~~vev~~~~~~~~~~i~~l~~~~--~~~~iGag~v~~~--~~~~~-a~~~Ga~~i~ 81 (190)
T cd00452 7 VAVLRGDDAEDALALAEALIEGGIRAIEITLRTPGALEAIRALRKEF--PEALIGAGTVLTP--EQADA-AIAAGAQFIV 81 (190)
T ss_pred EEEEEcCCHHHHHHHHHHHHHCCCCEEEEeCCChhHHHHHHHHHHHC--CCCEEEEEeCCCH--HHHHH-HHHcCCCEEE
Confidence 44455667777788888888889999888887664211113333333 21 0000000000 00000 0000000110
Q ss_pred hccCccccHHHHHhhcCCCEEEEecCCHHHHHHHHHcCCcEEEEcCCCCCCCCCccchHHHHHHHHHHhcCCCcEEEecC
Q 017718 206 GQIDRSLSWKWLQTITKLPILVKGVLTAEDARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGG 285 (367)
Q Consensus 206 ~~~d~~~~~~~l~~~~~~Pv~vK~v~~~~~a~~~~~~G~d~i~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~~~via~GG 285 (367)
. +..+.+....++..+.|+++ ++.+.+++..+.++|+|+|-+.. ..+...+.+..+.+..+ .+|+++.||
T Consensus 82 ~-p~~~~~~~~~~~~~~~~~i~-gv~t~~e~~~A~~~Gad~i~~~p-------~~~~g~~~~~~l~~~~~-~~p~~a~GG 151 (190)
T cd00452 82 S-PGLDPEVVKAANRAGIPLLP-GVATPTEIMQALELGADIVKLFP-------AEAVGPAYIKALKGPFP-QVRFMPTGG 151 (190)
T ss_pred c-CCCCHHHHHHHHHcCCcEEC-CcCCHHHHHHHHHCCCCEEEEcC-------CcccCHHHHHHHHhhCC-CCeEEEeCC
Confidence 0 00011222334446778766 77899999999999999999843 11223455666654442 589999999
Q ss_pred CCCHHHHHHHHHcCCCEEEechHHH
Q 017718 286 VRRGTDVFKALALGASGIFIGRPVV 310 (367)
Q Consensus 286 I~~~~dv~kal~lGAd~V~ig~~~l 310 (367)
| +.+++.+++.+||++|.+++.+.
T Consensus 152 I-~~~n~~~~~~~G~~~v~v~s~i~ 175 (190)
T cd00452 152 V-SLDNAAEWLAAGVVAVGGGSLLP 175 (190)
T ss_pred C-CHHHHHHHHHCCCEEEEEchhcc
Confidence 9 99999999999999999999875
|
This family belongs to the class I adolases whose reaction mechanism involves Schiff base formation between a substrate carbonyl and lysine residue in the active site. 2-keto-3-deoxy-6-phosphogluconate (KDPG) aldolase, is best known for its role in the Entner-Doudoroff pathway of bacteria, where it catalyzes the reversible cleavage of KDPG to pyruvate and glyceraldehyde-3-phosphate. 2-keto-4-hydroxyglutarate (KHG) aldolase, which has enzymatic specificity toward glyoxylate, forming KHG in the presence of pyruvate, and is capable of regulating glyoxylate levels in the glyoxylate bypass, an alternate pathway when bacteria are grown on acetate carbon sources. |
| >cd04732 HisA HisA | Back alignment and domain information |
|---|
Probab=98.35 E-value=2.4e-06 Score=79.21 Aligned_cols=77 Identities=25% Similarity=0.314 Sum_probs=62.7
Q ss_pred HHHHHHHHHcCCcEEEEcCCCCCCCCCccchHHHHHHHHHHhcCCCcEEEecCCCCHHHHHHHHHcCCCEEEechHHHHH
Q 017718 233 AEDARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFIGRPVVYS 312 (367)
Q Consensus 233 ~~~a~~~~~~G~d~i~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~~~via~GGI~~~~dv~kal~lGAd~V~ig~~~l~~ 312 (367)
.+-++.+.+.|++.+++.+....+...+ +.++.+.++.+.+ ++||+++|||++.+|+.+++..||++|++||.++.+
T Consensus 149 ~~~~~~~~~~ga~~iii~~~~~~g~~~g-~~~~~i~~i~~~~--~ipvi~~GGi~~~~di~~~~~~Ga~gv~vg~~~~~~ 225 (234)
T cd04732 149 EELAKRFEELGVKAIIYTDISRDGTLSG-PNFELYKELAAAT--GIPVIASGGVSSLDDIKALKELGVAGVIVGKALYEG 225 (234)
T ss_pred HHHHHHHHHcCCCEEEEEeecCCCccCC-CCHHHHHHHHHhc--CCCEEEecCCCCHHHHHHHHHCCCCEEEEeHHHHcC
Confidence 3557889999999999964321122233 6788999998876 799999999999999999999999999999998763
|
Phosphoribosylformimino-5-aminoimidazole carboxamide ribonucleotide (ProFAR) isomerase catalyzes the fourth step in histidine biosynthesis, an isomerisation of the aminoaldose moiety of ProFAR to the aminoketose of PRFAR (N-(5'-phospho-D-1'-ribulosylformimino)-5-amino-1-(5''-phospho-ribosyl)-4-imidazolecarboxamide). In bacteria and archaea, ProFAR isomerase is encoded by the HisA gene. |
| >PRK00748 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Validated | Back alignment and domain information |
|---|
Probab=98.32 E-value=2.4e-06 Score=79.16 Aligned_cols=77 Identities=26% Similarity=0.334 Sum_probs=62.2
Q ss_pred HHHHHHHHHcCCcEEEEcCCCCCCCCCccchHHHHHHHHHHhcCCCcEEEecCCCCHHHHHHHHHcC-CCEEEechHHHH
Q 017718 233 AEDARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALG-ASGIFIGRPVVY 311 (367)
Q Consensus 233 ~~~a~~~~~~G~d~i~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~~~via~GGI~~~~dv~kal~lG-Ad~V~ig~~~l~ 311 (367)
.+.++.+.+.|++.|.+.+...-+...| +.++.+.++.+.+ .+|||++|||++.+|+.+++..| |++|++||++++
T Consensus 149 ~e~~~~~~~~g~~~ii~~~~~~~g~~~G-~d~~~i~~l~~~~--~ipvia~GGi~~~~di~~~~~~g~~~gv~vg~a~~~ 225 (233)
T PRK00748 149 EDLAKRFEDAGVKAIIYTDISRDGTLSG-PNVEATRELAAAV--PIPVIASGGVSSLDDIKALKGLGAVEGVIVGRALYE 225 (233)
T ss_pred HHHHHHHHhcCCCEEEEeeecCcCCcCC-CCHHHHHHHHHhC--CCCEEEeCCCCCHHHHHHHHHcCCccEEEEEHHHHc
Confidence 4667888999999888853221112234 5789999998876 69999999999999999999998 999999999986
Q ss_pred H
Q 017718 312 S 312 (367)
Q Consensus 312 ~ 312 (367)
+
T Consensus 226 ~ 226 (233)
T PRK00748 226 G 226 (233)
T ss_pred C
Confidence 4
|
|
| >KOG2334 consensus tRNA-dihydrouridine synthase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=98.32 E-value=5.3e-06 Score=81.47 Aligned_cols=202 Identities=20% Similarity=0.250 Sum_probs=132.7
Q ss_pred eeeccceEeCcccchhccCChhhHHHHHHHHHcCCceeecCCCC--CCHHHHH---------------------hhCC--
Q 017718 68 FKISMPIMIAPTAMQKMAHPEGEYATARAASAAGTIMTLSSWST--SSVEEVA---------------------STGP-- 122 (367)
Q Consensus 68 ~~l~~Pi~iAPm~~~~l~~~~~e~~~a~aa~~~G~~~~vs~~~~--~~~e~i~---------------------~~~~-- 122 (367)
..+.+-+++|||- . -|+++++-.|-+.|..++.+..-. ..++-+. ...|
T Consensus 7 l~y~nk~iLApMv--r----~G~lpmrLLal~~Gadlv~~peIVdkKLIe~ir~~NealgtIDfv~p~~~~vvfr~~~~e 80 (477)
T KOG2334|consen 7 LFYRNKLILAPMV--R----AGELPMRLLALQYGADLVYTPEIVDKKLIECIRVENEALGTIDFVDPSDSTVVFRTCPAE 80 (477)
T ss_pred hhhcCcEeeehHH--H----hccchHHHHHHHhccceecChhhhhHHHHhccccccccccceeeecCCcceEEEEechhh
Confidence 4467789999993 2 257899999999999998765411 1111110 0011
Q ss_pred -CceEEEEeecCCHHHHHHHHHHHHHcCCcEEEEecCCCCCCchhHHhhhhcCCCCccccccccccccCccccccchhhH
Q 017718 123 -GIRFFQLYVYKDRNVVAQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLTLKNFQGLDLGKMDEANDSGLA 201 (367)
Q Consensus 123 -~~~~~QLy~~~d~~~~~~~l~ra~~~G~~ai~itvd~p~~g~r~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~ 201 (367)
....||+- ..+.+...+..+.. ......+++|++||-. |+.-.++ +
T Consensus 81 ~~rlilQ~g-T~sa~lA~e~A~lv-~nDvsgidiN~gCpK~----------fSi~~gm---------------------g 127 (477)
T KOG2334|consen 81 NSRLILQIG-TASAELALEAAKLV-DNDVSGIDINMGCPKE----------FSIHGGM---------------------G 127 (477)
T ss_pred cCeEEEEec-CCcHHHHHHHHHHh-hcccccccccCCCCCc----------cccccCC---------------------C
Confidence 34667875 45666654444333 3457778999999852 2110011 1
Q ss_pred HHhhhccCccccH-HHHHhhcCCCEEEEecC------CHHHHHHHHHcCCcEEEEcCCCCCC--CCCccchHHHHHHHHH
Q 017718 202 AYVAGQIDRSLSW-KWLQTITKLPILVKGVL------TAEDARIAVQAGAAGIIVSNHGARQ--LDYVPATIMALEEVVK 272 (367)
Q Consensus 202 ~~~~~~~d~~~~~-~~l~~~~~~Pv~vK~v~------~~~~a~~~~~~G~d~i~vs~~gg~~--~~~~~~~~~~l~~i~~ 272 (367)
..+..++|.-..+ ..+.+...+|+..|+.. +.+..++....|+.+|.| |+.+. -..-+.+.+.+.++++
T Consensus 128 aalLt~~dkl~~IL~sLvk~~~vpvtckIR~L~s~edtL~lv~ri~~tgi~ai~v--h~rt~d~r~~~~~~~~~i~~i~~ 205 (477)
T KOG2334|consen 128 AALLTDPDKLVAILYSLVKGNKVPVTCKIRLLDSKEDTLKLVKRICATGIAAITV--HCRTRDERNQEPATKDYIREIAQ 205 (477)
T ss_pred chhhcCHHHHHHHHHHHHhcCcccceeEEEecCCcccHHHHHHHHHhcCCceEEE--EeeccccCCCCCCCHHHHHHHHH
Confidence 1112222222232 36667779999999972 345588899999999999 55432 2235678889999998
Q ss_pred HhcCCCcEEEecCCCC---HHHHHHHHH-cCCCEEEechHHHH
Q 017718 273 ATQGRIPVFLDGGVRR---GTDVFKALA-LGASGIFIGRPVVY 311 (367)
Q Consensus 273 ~~~~~~~via~GGI~~---~~dv~kal~-lGAd~V~ig~~~l~ 311 (367)
.++ .+|||++||..+ +.|+.+... .|++.||+.|...+
T Consensus 206 ~~~-~V~vi~ng~~~~~e~y~Di~~~~~~~~~~~vmiAR~A~~ 247 (477)
T KOG2334|consen 206 ACQ-MVPVIVNGGSMDIEQYSDIEDFQEKTGADSVMIARAAES 247 (477)
T ss_pred Hhc-cceEeeccchhhHHhhhhHHHHHHHhccchhhhhHhhhc
Confidence 884 399999999999 899998887 69999999996654
|
|
| >TIGR00007 phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase | Back alignment and domain information |
|---|
Probab=98.31 E-value=2.9e-06 Score=78.59 Aligned_cols=77 Identities=26% Similarity=0.354 Sum_probs=61.6
Q ss_pred HHHHHHHHHcCCcEEEEcCCCCCCCCCccchHHHHHHHHHHhcCCCcEEEecCCCCHHHHHHHHHcCCCEEEechHHHHH
Q 017718 233 AEDARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFIGRPVVYS 312 (367)
Q Consensus 233 ~~~a~~~~~~G~d~i~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~~~via~GGI~~~~dv~kal~lGAd~V~ig~~~l~~ 312 (367)
.+.++.+.+.|++.+++.+-..-+...+ ..++.+.++.+.+ ++||++.|||++.+|+.+++.+|||+|++||.++.+
T Consensus 148 ~~~~~~~~~~g~~~ii~~~~~~~g~~~g-~~~~~i~~i~~~~--~ipvia~GGi~~~~di~~~~~~Gadgv~ig~a~~~~ 224 (230)
T TIGR00007 148 EELAKRLEELGLEGIIYTDISRDGTLSG-PNFELTKELVKAV--NVPVIASGGVSSIDDLIALKKLGVYGVIVGKALYEG 224 (230)
T ss_pred HHHHHHHHhCCCCEEEEEeecCCCCcCC-CCHHHHHHHHHhC--CCCEEEeCCCCCHHHHHHHHHCCCCEEEEeHHHHcC
Confidence 4567889999999998753211111223 4688888888775 799999999999999999999999999999999864
|
Examples of this enzyme in Actinobacteria have been found to be bifunctional, also possessing phosphoribosylanthranilate isomerase activity ; the trusted cutoff here has now been raised to 275.0 to exclude the bifunctional group, now represented by model TIGR01919. HisA from Lactococcus lactis was reported to be inactive (MEDLINE:93322317). |
| >TIGR03572 WbuZ glycosyl amidation-associated protein WbuZ | Back alignment and domain information |
|---|
Probab=98.30 E-value=3.2e-06 Score=78.48 Aligned_cols=76 Identities=28% Similarity=0.270 Sum_probs=60.6
Q ss_pred HHHHHHHHHcCCcEEEEcCCCCCCCCCccchHHHHHHHHHHhcCCCcEEEecCCCCHHHHHH-HHHcCCCEEEechHHHH
Q 017718 233 AEDARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFK-ALALGASGIFIGRPVVY 311 (367)
Q Consensus 233 ~~~a~~~~~~G~d~i~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~~~via~GGI~~~~dv~k-al~lGAd~V~ig~~~l~ 311 (367)
.+.++.+.++|+|.|++++....+...+ ..++.+.++++.+ .+||+++|||++.+|+.+ ....|||+|++|++|-|
T Consensus 156 ~~~~~~~~~~G~d~i~i~~i~~~g~~~g-~~~~~~~~i~~~~--~ipvia~GGi~s~~di~~~l~~~gadgV~vg~a~h~ 232 (232)
T TIGR03572 156 VEWAREAEQLGAGEILLNSIDRDGTMKG-YDLELIKTVSDAV--SIPVIALGGAGSLDDLVEVALEAGASAVAAASLFHF 232 (232)
T ss_pred HHHHHHHHHcCCCEEEEeCCCccCCcCC-CCHHHHHHHHhhC--CCCEEEECCCCCHHHHHHHHHHcCCCEEEEehhhhC
Confidence 4678999999999999976322111223 3688888888876 799999999999999999 55589999999998853
|
This clade of sequences is highly similar to the HisF protein, but generally represents the second HisF homolog in the genome where the other is an authentic HisF observed in the context of a complete histidine biosynthesis operon. The similarity between these WbuZ sequences and true HisFs is such that often the closest match by BLAST of a WbuZ is a HisF. Only by making a multiple sequence alignment is the homology relationship among the WbuZ sequences made apparent. WbuZ genes are invariably observed in the presence of a homolog of the HisH protein (designated WbuY) and a proposed N-acetyl sugar amidotransferase designated in WbuX in E. coli, IfnA in P. aeriginosa and PseA in C. jejuni. Similarly, this trio of genes is invariably found in the context of saccharide biosynthesis loci. It has been shown that the WbuYZ homologs are not essential components of the activity expressed by WbuX, leading to the proposal that these to pr |
| >PRK13111 trpA tryptophan synthase subunit alpha; Provisional | Back alignment and domain information |
|---|
Probab=98.29 E-value=5.1e-05 Score=71.79 Aligned_cols=91 Identities=14% Similarity=0.178 Sum_probs=62.0
Q ss_pred cCCCEEEEec--CCHHHHHHHHHcCCcEEEEcCC-C--CCCCCCccchHHHHHHHHHHhcCCCcEEEecCCCCHHHHHHH
Q 017718 221 TKLPILVKGV--LTAEDARIAVQAGAAGIIVSNH-G--ARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKA 295 (367)
Q Consensus 221 ~~~Pv~vK~v--~~~~~a~~~~~~G~d~i~vs~~-g--g~~~~~~~~~~~~l~~i~~~~~~~~~via~GGI~~~~dv~ka 295 (367)
.++..+.=.. .+.+.++...+..-++|.+-.. | |..-.......+.+.++++.. ++||++.+||++++|+.++
T Consensus 141 ~gl~~I~lvap~t~~eri~~i~~~s~gfIY~vs~~GvTG~~~~~~~~~~~~i~~vk~~~--~~pv~vGfGI~~~e~v~~~ 218 (258)
T PRK13111 141 HGLDLIFLVAPTTTDERLKKIASHASGFVYYVSRAGVTGARSADAADLAELVARLKAHT--DLPVAVGFGISTPEQAAAI 218 (258)
T ss_pred cCCcEEEEeCCCCCHHHHHHHHHhCCCcEEEEeCCCCCCcccCCCccHHHHHHHHHhcC--CCcEEEEcccCCHHHHHHH
Confidence 4554443222 3356677777777777765222 2 221112223445778887755 7999999999999999999
Q ss_pred HHcCCCEEEechHHHHHhh
Q 017718 296 LALGASGIFIGRPVVYSLA 314 (367)
Q Consensus 296 l~lGAd~V~ig~~~l~~l~ 314 (367)
+.. ||+|.+|++++..+.
T Consensus 219 ~~~-ADGviVGSaiv~~~~ 236 (258)
T PRK13111 219 AAV-ADGVIVGSALVKIIE 236 (258)
T ss_pred HHh-CCEEEEcHHHHHHHH
Confidence 975 999999999987654
|
|
| >KOG0399 consensus Glutamate synthase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.29 E-value=2.9e-06 Score=91.53 Aligned_cols=134 Identities=28% Similarity=0.283 Sum_probs=98.3
Q ss_pred HHhhc-CCCEEEEecCCHH---HHHHHHHcCCcEEEEcCC-CCCCCC------CccchHHH-HHHHHH-----HhcCCCc
Q 017718 217 LQTIT-KLPILVKGVLTAE---DARIAVQAGAAGIIVSNH-GARQLD------YVPATIMA-LEEVVK-----ATQGRIP 279 (367)
Q Consensus 217 l~~~~-~~Pv~vK~v~~~~---~a~~~~~~G~d~i~vs~~-gg~~~~------~~~~~~~~-l~~i~~-----~~~~~~~ 279 (367)
++... .-.|.||.+...- .|.-.+++.||.|.||+| ||+... ..--+|++ |.|..+ .+++++-
T Consensus 1092 Lk~aNP~ArVSVKLVSEaGVGiVASGVaK~~ADhI~vSGhDGGTGAS~wt~IK~AGlPWELGlAEThQtLv~NdLR~rvV 1171 (2142)
T KOG0399|consen 1092 LKCANPRARVSVKLVSEAGVGIVASGVAKGNADHILVSGHDGGTGASRWTGIKHAGLPWELGLAETHQTLVLNDLRGRVV 1171 (2142)
T ss_pred hhccCCCceeEEEEEecccceeeeeccccccCceEEEeccCCCcCcccccccccCCCChhhcchhhhhHHhhccccccEE
Confidence 44433 3568999984321 244566788999999999 555321 11123332 334333 2456788
Q ss_pred EEEecCCCCHHHHHHHHHcCCCEEEechHHHHHhhcc--------------------------C-hHHHHHHHHHHHHHH
Q 017718 280 VFLDGGVRRGTDVFKALALGASGIFIGRPVVYSLAAE--------------------------G-EKGVRRVLEMLREEF 332 (367)
Q Consensus 280 via~GGI~~~~dv~kal~lGAd~V~ig~~~l~~l~~~--------------------------G-~~~v~~~i~~l~~el 332 (367)
+-.||++++|.||+-|-.+||+-..+++.-|.+++|- | ++.|.+++-.+.+|+
T Consensus 1172 lqtDGqlrtG~DV~iAallGAeefgf~T~plIalGCiMmRkCH~NtCpVGiAtQdp~LRakF~G~PehvVNff~yvaEEv 1251 (2142)
T KOG0399|consen 1172 LQTDGQLRTGRDVAIAALLGAEEFGFSTAPLIALGCIMMRKCHLNTCPVGIATQDPELRAKFPGQPEHVVNFFFYVAEEV 1251 (2142)
T ss_pred EEecCccccchHHHHHHHhCchhhcccccHHHHHhhHHHHHhccCCCCcccccCCHHHHhhCCCCcHHHHHHHHHHHHHH
Confidence 8899999999999999999999999999777776541 3 467889999999999
Q ss_pred HHHHHHhCCCChhhhccc
Q 017718 333 ELAMALSGCRSLKEITRD 350 (367)
Q Consensus 333 ~~~m~~~G~~si~~l~~~ 350 (367)
+.+|..+|++++.|+-+.
T Consensus 1252 R~imakLGfrtldemvGr 1269 (2142)
T KOG0399|consen 1252 RGIMAKLGFRTLDEMVGR 1269 (2142)
T ss_pred HHHHHHhCcchHHHHhcc
Confidence 999999999999999643
|
|
| >PRK00507 deoxyribose-phosphate aldolase; Provisional | Back alignment and domain information |
|---|
Probab=98.25 E-value=2e-05 Score=72.88 Aligned_cols=87 Identities=24% Similarity=0.263 Sum_probs=64.9
Q ss_pred HHHhhcCCCEEEEec-----CCHHH----HHHHHHcCCcEEEEcCCCCCCCCCccchHHHHHHHHHHhcCCCcEEEecCC
Q 017718 216 WLQTITKLPILVKGV-----LTAED----ARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGV 286 (367)
Q Consensus 216 ~l~~~~~~Pv~vK~v-----~~~~~----a~~~~~~G~d~i~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~~~via~GGI 286 (367)
.+++.. .|+.+|.+ ++.++ ++.+.++|+|+|..|. | +..+..+.+.+..+++..+++++|.++|||
T Consensus 114 ~v~~~~-~~~~lKvIlEt~~L~~e~i~~a~~~~~~agadfIKTsT-G---~~~~gat~~~v~~m~~~~~~~~~IKasGGI 188 (221)
T PRK00507 114 AVVEAA-GGAVLKVIIETCLLTDEEKVKACEIAKEAGADFVKTST-G---FSTGGATVEDVKLMRETVGPRVGVKASGGI 188 (221)
T ss_pred HHHHhc-CCceEEEEeecCcCCHHHHHHHHHHHHHhCCCEEEcCC-C---CCCCCCCHHHHHHHHHHhCCCceEEeeCCc
Confidence 444433 47889985 33333 5678999999776643 3 223336677777777777778999999999
Q ss_pred CCHHHHHHHHHcCCCEEEech
Q 017718 287 RRGTDVFKALALGASGIFIGR 307 (367)
Q Consensus 287 ~~~~dv~kal~lGAd~V~ig~ 307 (367)
++.+|+.+.+.+||+.++..+
T Consensus 189 rt~~~a~~~i~aGA~riGtS~ 209 (221)
T PRK00507 189 RTLEDALAMIEAGATRLGTSA 209 (221)
T ss_pred CCHHHHHHHHHcCcceEccCc
Confidence 999999999999999987655
|
|
| >TIGR00735 hisF imidazoleglycerol phosphate synthase, cyclase subunit | Back alignment and domain information |
|---|
Probab=98.22 E-value=7.6e-06 Score=77.20 Aligned_cols=76 Identities=21% Similarity=0.302 Sum_probs=61.3
Q ss_pred HHHHHHHHHcCCcEEEEcCCCCCCCCCccchHHHHHHHHHHhcCCCcEEEecCCCCHHHHHHHHHcC-CCEEEechHHHH
Q 017718 233 AEDARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALG-ASGIFIGRPVVY 311 (367)
Q Consensus 233 ~~~a~~~~~~G~d~i~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~~~via~GGI~~~~dv~kal~lG-Ad~V~ig~~~l~ 311 (367)
.+.++.+.++|+|.|++++-.. ......+.++.+.++++.+ ++|||++|||++.+|+.+++..| ||+|++|+.+..
T Consensus 158 ~~~~~~l~~~G~~~iivt~i~~-~g~~~g~~~~~~~~i~~~~--~ipvia~GGi~s~~di~~~~~~g~~dgv~~g~a~~~ 234 (254)
T TIGR00735 158 VEWAKEVEKLGAGEILLTSMDK-DGTKSGYDLELTKAVSEAV--KIPVIASGGAGKPEHFYEAFTKGKADAALAASVFHY 234 (254)
T ss_pred HHHHHHHHHcCCCEEEEeCcCc-ccCCCCCCHHHHHHHHHhC--CCCEEEeCCCCCHHHHHHHHHcCCcceeeEhHHHhC
Confidence 4567899999999999965211 1112335678888888876 79999999999999999999988 999999998865
|
|
| >cd04731 HisF The cyclase subunit of imidazoleglycerol phosphate synthase (HisF) | Back alignment and domain information |
|---|
Probab=98.17 E-value=1.6e-05 Score=74.25 Aligned_cols=76 Identities=24% Similarity=0.277 Sum_probs=62.5
Q ss_pred HHHHHHHHHcCCcEEEEcCCCCCCCCCccchHHHHHHHHHHhcCCCcEEEecCCCCHHHHHHHHHcCCCEEEechHHHH
Q 017718 233 AEDARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFIGRPVVY 311 (367)
Q Consensus 233 ~~~a~~~~~~G~d~i~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~~~via~GGI~~~~dv~kal~lGAd~V~ig~~~l~ 311 (367)
.+-++.+.++|++.|.+.+-.+ .....+..++.+.++++.+ ++||+++|||++.+|+.+++..||++|++|+.++.
T Consensus 30 ~~~a~~~~~~G~~~i~i~d~~~-~~~~~~~~~~~i~~i~~~~--~~pv~~~GGI~s~~d~~~~l~~G~~~v~ig~~~~~ 105 (243)
T cd04731 30 VELAKRYNEQGADELVFLDITA-SSEGRETMLDVVERVAEEV--FIPLTVGGGIRSLEDARRLLRAGADKVSINSAAVE 105 (243)
T ss_pred HHHHHHHHHCCCCEEEEEcCCc-ccccCcccHHHHHHHHHhC--CCCEEEeCCCCCHHHHHHHHHcCCceEEECchhhh
Confidence 3668899999999998866332 1123455788888988877 79999999999999999999999999999998764
|
Imidazole glycerol phosphate synthase (IGPS) catalyzes the fifth step of histidine biosynthesis, the formation of the imidazole ring. IGPS converts N1-(5'-phosphoribulosyl)-formimino-5-aminoimidazole-4-carboxamide ribonucleotide (PRFAR) to imidazole glycerol phosphate (ImGP) and 5'-(5-aminoimidazole-4-carboxamide) ribonucleotide (AICAR). This conversion involves two tightly coupled reactions in distinct active sites of IGPS. The two catalytic domains can be fused, like in fungi and plants, or peformed by a heterodimer (HisH-glutaminase and HisF-cyclase), like in bacteria. |
| >PLN02591 tryptophan synthase | Back alignment and domain information |
|---|
Probab=98.12 E-value=0.00038 Score=65.50 Aligned_cols=92 Identities=15% Similarity=0.219 Sum_probs=61.6
Q ss_pred hcCCCEEEEec--CCHHHHHHHHHcCCcEEEEcCCCC-CCCCCc-cc-hHHHHHHHHHHhcCCCcEEEecCCCCHHHHHH
Q 017718 220 ITKLPILVKGV--LTAEDARIAVQAGAAGIIVSNHGA-RQLDYV-PA-TIMALEEVVKATQGRIPVFLDGGVRRGTDVFK 294 (367)
Q Consensus 220 ~~~~Pv~vK~v--~~~~~a~~~~~~G~d~i~vs~~gg-~~~~~~-~~-~~~~l~~i~~~~~~~~~via~GGI~~~~dv~k 294 (367)
..++..+.=.. .+.+-.+...+..-.+|.+-..-| +....+ +. ..+.+.++++.. ++||+.--||++++|+.+
T Consensus 129 ~~gl~~I~lv~Ptt~~~ri~~ia~~~~gFIY~Vs~~GvTG~~~~~~~~~~~~i~~vk~~~--~~Pv~vGFGI~~~e~v~~ 206 (250)
T PLN02591 129 KNGIELVLLTTPTTPTERMKAIAEASEGFVYLVSSTGVTGARASVSGRVESLLQELKEVT--DKPVAVGFGISKPEHAKQ 206 (250)
T ss_pred HcCCeEEEEeCCCCCHHHHHHHHHhCCCcEEEeeCCCCcCCCcCCchhHHHHHHHHHhcC--CCceEEeCCCCCHHHHHH
Confidence 34665555333 334556666666666777633222 211122 22 334577776643 899999889999999999
Q ss_pred HHHcCCCEEEechHHHHHh
Q 017718 295 ALALGASGIFIGRPVVYSL 313 (367)
Q Consensus 295 al~lGAd~V~ig~~~l~~l 313 (367)
++..|||+|.+|++++.-.
T Consensus 207 ~~~~GADGvIVGSalVk~i 225 (250)
T PLN02591 207 IAGWGADGVIVGSAMVKAL 225 (250)
T ss_pred HHhcCCCEEEECHHHHHhh
Confidence 9999999999999998654
|
|
| >PRK02083 imidazole glycerol phosphate synthase subunit HisF; Provisional | Back alignment and domain information |
|---|
Probab=98.09 E-value=1.9e-05 Score=74.37 Aligned_cols=76 Identities=24% Similarity=0.281 Sum_probs=63.7
Q ss_pred HHHHHHHHHcCCcEEEEcCCCCCCCCCccchHHHHHHHHHHhcCCCcEEEecCCCCHHHHHHHHHcCCCEEEechHHHH
Q 017718 233 AEDARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFIGRPVVY 311 (367)
Q Consensus 233 ~~~a~~~~~~G~d~i~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~~~via~GGI~~~~dv~kal~lGAd~V~ig~~~l~ 311 (367)
.+-|+.+.+.|++.|.+.+-.+. .......++.++++.+.+ ++||+++|||++.+|+.+++..||+.|++|+.++.
T Consensus 33 ~~~a~~~~~~G~~~i~i~dl~~~-~~~~~~~~~~i~~i~~~~--~ipv~~~GGi~s~~~~~~~l~~Ga~~Viigt~~l~ 108 (253)
T PRK02083 33 VELAKRYNEEGADELVFLDITAS-SEGRDTMLDVVERVAEQV--FIPLTVGGGIRSVEDARRLLRAGADKVSINSAAVA 108 (253)
T ss_pred HHHHHHHHHcCCCEEEEEeCCcc-cccCcchHHHHHHHHHhC--CCCEEeeCCCCCHHHHHHHHHcCCCEEEEChhHhh
Confidence 36688899999999999764331 123467888999998877 79999999999999999999999999999998764
|
|
| >TIGR00735 hisF imidazoleglycerol phosphate synthase, cyclase subunit | Back alignment and domain information |
|---|
Probab=98.09 E-value=2e-05 Score=74.30 Aligned_cols=77 Identities=25% Similarity=0.265 Sum_probs=63.9
Q ss_pred CH-HHHHHHHHcCCcEEEEcCCCCCCCCCccchHHHHHHHHHHhcCCCcEEEecCCCCHHHHHHHHHcCCCEEEechHHH
Q 017718 232 TA-EDARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFIGRPVV 310 (367)
Q Consensus 232 ~~-~~a~~~~~~G~d~i~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~~~via~GGI~~~~dv~kal~lGAd~V~ig~~~l 310 (367)
++ +.|+.+.+.|++.+.+.+.-+. .......++.+.++++.+ .+||+++|||++.+|+.+++.+||+.|++||.++
T Consensus 31 dp~~~a~~~~~~G~~~l~v~Dl~~~-~~~~~~n~~~i~~i~~~~--~~pv~~~GGi~s~~d~~~~~~~Ga~~vivgt~~~ 107 (254)
T TIGR00735 31 DPVELAQRYDEEGADELVFLDITAS-SEGRTTMIDVVERTAETV--FIPLTVGGGIKSIEDVDKLLRAGADKVSINTAAV 107 (254)
T ss_pred CHHHHHHHHHHcCCCEEEEEcCCcc-cccChhhHHHHHHHHHhc--CCCEEEECCCCCHHHHHHHHHcCCCEEEEChhHh
Confidence 44 6688999999999999764321 124456788899998877 7999999999999999999999999999999876
Q ss_pred H
Q 017718 311 Y 311 (367)
Q Consensus 311 ~ 311 (367)
.
T Consensus 108 ~ 108 (254)
T TIGR00735 108 K 108 (254)
T ss_pred h
Confidence 4
|
|
| >PRK07455 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional | Back alignment and domain information |
|---|
Probab=98.08 E-value=7.4e-05 Score=67.33 Aligned_cols=86 Identities=20% Similarity=0.196 Sum_probs=66.0
Q ss_pred HHHhhcCCCEEEEecCCHHHHHHHHHcCCcEEEEcCCCCCCCCCccchHHHHHHHHHHhcCCCcEEEecCCCCHHHHHHH
Q 017718 216 WLQTITKLPILVKGVLTAEDARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKA 295 (367)
Q Consensus 216 ~l~~~~~~Pv~vK~v~~~~~a~~~~~~G~d~i~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~~~via~GGI~~~~dv~ka 295 (367)
.+++..+++.++. +.+++++..+.+.|+|+|-+.-. ....-.+.+.+++..++ ++|+++.||| +.+++...
T Consensus 99 ~~~~~~~~~~i~G-~~t~~e~~~A~~~Gadyv~~Fpt------~~~~G~~~l~~~~~~~~-~ipvvaiGGI-~~~n~~~~ 169 (187)
T PRK07455 99 EAAVAQDIPIIPG-ALTPTEIVTAWQAGASCVKVFPV------QAVGGADYIKSLQGPLG-HIPLIPTGGV-TLENAQAF 169 (187)
T ss_pred HHHHHcCCCEEcC-cCCHHHHHHHHHCCCCEEEECcC------CcccCHHHHHHHHhhCC-CCcEEEeCCC-CHHHHHHH
Confidence 4445556777664 89999999999999999998321 01223556666666552 6999999999 77999999
Q ss_pred HHcCCCEEEechHHH
Q 017718 296 LALGASGIFIGRPVV 310 (367)
Q Consensus 296 l~lGAd~V~ig~~~l 310 (367)
++.||++|.+++.++
T Consensus 170 l~aGa~~vav~s~i~ 184 (187)
T PRK07455 170 IQAGAIAVGLSGQLF 184 (187)
T ss_pred HHCCCeEEEEehhcc
Confidence 999999999999764
|
|
| >PF00218 IGPS: Indole-3-glycerol phosphate synthase; InterPro: IPR013798 Indole-3-glycerol phosphate synthase (4 | Back alignment and domain information |
|---|
Probab=98.07 E-value=7.3e-05 Score=70.42 Aligned_cols=164 Identities=24% Similarity=0.324 Sum_probs=91.5
Q ss_pred HHHHHHHHHcCCcEEEEecCCCCCCchhHHhhh---hcCCCCccccccccccccCccccccchhhHHH---hhhccCccc
Q 017718 139 AQLVRRAERAGFKAIALTVDTPRLGRREADIKN---RFTLPPFLTLKNFQGLDLGKMDEANDSGLAAY---VAGQIDRSL 212 (367)
Q Consensus 139 ~~~l~ra~~~G~~ai~itvd~p~~g~r~~~~~~---~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~d~~~ 212 (367)
.++++.-++.|+.+|-|..|....+....|++. ...+|- -.+.+- ++...+.+....+ ++. +....++.
T Consensus 71 ~~~a~~y~~~GA~aiSVlTe~~~F~Gs~~dL~~v~~~~~~Pv--L~KDFI-id~~QI~eA~~~G-ADaVLLI~~~L~~~- 145 (254)
T PF00218_consen 71 AEIAKAYEEAGAAAISVLTEPKFFGGSLEDLRAVRKAVDLPV--LRKDFI-IDPYQIYEARAAG-ADAVLLIAAILSDD- 145 (254)
T ss_dssp HHHHHHHHHTT-SEEEEE--SCCCHHHHHHHHHHHHHSSS-E--EEES----SHHHHHHHHHTT--SEEEEEGGGSGHH-
T ss_pred HHHHHHHHhcCCCEEEEECCCCCCCCCHHHHHHHHHHhCCCc--ccccCC-CCHHHHHHHHHcC-CCEeehhHHhCCHH-
Confidence 345666778999999999998887766666653 233331 111110 0000000000000 000 00000110
Q ss_pred cHH---HHHhhcCCCEEEEecCCHHHHHHHHHcCCcEEEEcCCCCCCCCCccchHHHHHHHHHHhcCCCcEEEecCCCCH
Q 017718 213 SWK---WLQTITKLPILVKGVLTAEDARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRG 289 (367)
Q Consensus 213 ~~~---~l~~~~~~Pv~vK~v~~~~~a~~~~~~G~d~i~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~~~via~GGI~~~ 289 (367)
... ......++-++| .+-+.++++++.++|++.|-|.|.- +.+-....+...++...++.++.+|+.+||.+.
T Consensus 146 ~l~~l~~~a~~lGle~lV-EVh~~~El~~al~~~a~iiGINnRd---L~tf~vd~~~~~~l~~~ip~~~~~iseSGI~~~ 221 (254)
T PF00218_consen 146 QLEELLELAHSLGLEALV-EVHNEEELERALEAGADIIGINNRD---LKTFEVDLNRTEELAPLIPKDVIVISESGIKTP 221 (254)
T ss_dssp HHHHHHHHHHHTT-EEEE-EESSHHHHHHHHHTT-SEEEEESBC---TTTCCBHTHHHHHHHCHSHTTSEEEEESS-SSH
T ss_pred HHHHHHHHHHHcCCCeEE-EECCHHHHHHHHHcCCCEEEEeCcc---ccCcccChHHHHHHHhhCccceeEEeecCCCCH
Confidence 111 222334665554 5678899999999999988886633 333333344444555556667899999999999
Q ss_pred HHHHHHHHcCCCEEEechHHHH
Q 017718 290 TDVFKALALGASGIFIGRPVVY 311 (367)
Q Consensus 290 ~dv~kal~lGAd~V~ig~~~l~ 311 (367)
+|+.++..+|+|+|.||+.+|.
T Consensus 222 ~d~~~l~~~G~davLVGe~lm~ 243 (254)
T PF00218_consen 222 EDARRLARAGADAVLVGEALMR 243 (254)
T ss_dssp HHHHHHCTTT-SEEEESHHHHT
T ss_pred HHHHHHHHCCCCEEEECHHHhC
Confidence 9999999999999999999986
|
1.1.48 from EC) (IGPS) catalyses the fourth step in the biosynthesis of tryptophan, the ring closure of 1-(2-carboxy-phenylamino)-1-deoxyribulose into indol-3-glycerol-phosphate. In some bacteria, IGPS is a single chain enzyme. In others, such as Escherichia coli, it is the N-terminal domain of a bifunctional enzyme that also catalyses N-(5'-phosphoribosyl)anthranilate isomerase (5.3.1.24 from EC) (PRAI) activity (see IPR001240 from INTERPRO), the third step of tryptophan biosynthesis. In fungi, IGPS is the central domain of a trifunctional enzyme that contains a PRAI C-terminal domain and a glutamine amidotransferase (2.4.2 from EC) (GATase) N-terminal domain (see IPR000991 from INTERPRO). A structure of the IGPS domain of the bifunctional enzyme from the mesophilic bacterium E. coli (eIGPS) has been compared with the monomeric indole-3-glycerol phosphate synthase from the hyperthermophilic archaeon Sulfolobus solfataricus (sIGPS). Both are single-domain (beta/alpha)8 barrel proteins, with one (eIGPS) or two (sIGPS) additional helices inserted before the first beta strand []. ; GO: 0004425 indole-3-glycerol-phosphate synthase activity; PDB: 1VC4_A 1PII_A 1JCM_P 1I4N_B 1J5T_A 3TSM_B 4FB7_A 3QJA_A 1JUL_A 2C3Z_A .... |
| >COG0107 HisF Imidazoleglycerol-phosphate synthase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.06 E-value=5.6e-05 Score=69.12 Aligned_cols=64 Identities=22% Similarity=0.303 Sum_probs=51.5
Q ss_pred hHHHHHHHHHHhcCCCcEEEecCCCCHHHHHHHHHcC-CCEEEechHHHHHhhccChHHHHHHHHHHHHHHHHHHHHhCC
Q 017718 263 TIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALG-ASGIFIGRPVVYSLAAEGEKGVRRVLEMLREEFELAMALSGC 341 (367)
Q Consensus 263 ~~~~l~~i~~~~~~~~~via~GGI~~~~dv~kal~lG-Ad~V~ig~~~l~~l~~~G~~~v~~~i~~l~~el~~~m~~~G~ 341 (367)
.++.++.+++.+ ++|||++||..+.+|..+++..| ||++..++-|.|. + .-..|++..|...|.
T Consensus 187 Dl~l~~~v~~~v--~iPvIASGGaG~~ehf~eaf~~~~adAaLAAsiFH~~-----~--------~~i~evK~yL~~~gi 251 (256)
T COG0107 187 DLELTRAVREAV--NIPVIASGGAGKPEHFVEAFTEGKADAALAASIFHFG-----E--------ITIGEVKEYLAEQGI 251 (256)
T ss_pred CHHHHHHHHHhC--CCCEEecCCCCcHHHHHHHHHhcCccHHHhhhhhhcC-----c--------ccHHHHHHHHHHcCC
Confidence 556777777777 89999999999999999999988 9999999888774 2 234566777777665
|
|
| >PF05690 ThiG: Thiazole biosynthesis protein ThiG; InterPro: IPR008867 This family consists of several bacterial thiazole biosynthesis protein G sequences | Back alignment and domain information |
|---|
Probab=98.05 E-value=3.3e-05 Score=70.96 Aligned_cols=85 Identities=18% Similarity=0.269 Sum_probs=60.5
Q ss_pred CCCEEEEecCCHHHHHHHHHcCCcEEEEcCCC-CCCCCCccchHHHHHHHHHHhcCCCcEEEecCCCCHHHHHHHHHcCC
Q 017718 222 KLPILVKGVLTAEDARIAVQAGAAGIIVSNHG-ARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGA 300 (367)
Q Consensus 222 ~~Pv~vK~v~~~~~a~~~~~~G~d~i~vs~~g-g~~~~~~~~~~~~l~~i~~~~~~~~~via~GGI~~~~dv~kal~lGA 300 (367)
+.-|+.=...++-.|++++++|+..|.--+.. |+ ..|..+...|..+++.. ++|||.|+||.++.|+.+++.+||
T Consensus 123 GF~VlPY~~~D~v~akrL~d~GcaavMPlgsPIGS--g~Gi~n~~~l~~i~~~~--~vPvIvDAGiG~pSdaa~AMElG~ 198 (247)
T PF05690_consen 123 GFVVLPYCTDDPVLAKRLEDAGCAAVMPLGSPIGS--GRGIQNPYNLRIIIERA--DVPVIVDAGIGTPSDAAQAMELGA 198 (247)
T ss_dssp T-EEEEEE-S-HHHHHHHHHTT-SEBEEBSSSTTT-----SSTHHHHHHHHHHG--SSSBEEES---SHHHHHHHHHTT-
T ss_pred CCEEeecCCCCHHHHHHHHHCCCCEEEeccccccc--CcCCCCHHHHHHHHHhc--CCcEEEeCCCCCHHHHHHHHHcCC
Confidence 44555555578889999999999998874421 11 12455677888888877 899999999999999999999999
Q ss_pred CEEEechHHH
Q 017718 301 SGIFIGRPVV 310 (367)
Q Consensus 301 d~V~ig~~~l 310 (367)
|+|.+-+++.
T Consensus 199 daVLvNTAiA 208 (247)
T PF05690_consen 199 DAVLVNTAIA 208 (247)
T ss_dssp SEEEESHHHH
T ss_pred ceeehhhHHh
Confidence 9999999774
|
ThiG, together with ThiF and ThiH, is proposed to be involved in the synthesis of 4-methyl-5-(b-hydroxyethyl)thiazole (THZ) which is an intermediate in the thiazole production pathway [].; GO: 0009228 thiamine biosynthetic process; PDB: 1WV2_B 1TYG_C 1XM3_B 2HTM_C 2YZR_C. |
| >PRK00043 thiE thiamine-phosphate pyrophosphorylase; Reviewed | Back alignment and domain information |
|---|
Probab=98.04 E-value=9.9e-05 Score=67.13 Aligned_cols=79 Identities=28% Similarity=0.381 Sum_probs=59.9
Q ss_pred cCCHHHHHHHHHcCCcEEEEcCC--CCCCCC-CccchHHHHHHHHHHhcCCCcEEEecCCCCHHHHHHHHHcCCCEEEec
Q 017718 230 VLTAEDARIAVQAGAAGIIVSNH--GARQLD-YVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFIG 306 (367)
Q Consensus 230 v~~~~~a~~~~~~G~d~i~vs~~--gg~~~~-~~~~~~~~l~~i~~~~~~~~~via~GGI~~~~dv~kal~lGAd~V~ig 306 (367)
+.+.+++..+.+.|+|+|.++.- +++... ..+..++.+.++++.. .++||++.||| +.+++.+++.+||++|.+|
T Consensus 111 ~~t~~e~~~a~~~gaD~v~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~-~~~~v~a~GGI-~~~~i~~~~~~Ga~gv~~g 188 (212)
T PRK00043 111 THTLEEAAAALAAGADYVGVGPIFPTPTKKDAKAPQGLEGLREIRAAV-GDIPIVAIGGI-TPENAPEVLEAGADGVAVV 188 (212)
T ss_pred CCCHHHHHHHhHcCCCEEEECCccCCCCCCCCCCCCCHHHHHHHHHhc-CCCCEEEECCc-CHHHHHHHHHcCCCEEEEe
Confidence 35788899999999999998531 111111 1122377888887766 24999999999 7899999999999999999
Q ss_pred hHHH
Q 017718 307 RPVV 310 (367)
Q Consensus 307 ~~~l 310 (367)
+.+.
T Consensus 189 s~i~ 192 (212)
T PRK00043 189 SAIT 192 (212)
T ss_pred HHhh
Confidence 9865
|
|
| >PRK13957 indole-3-glycerol-phosphate synthase; Provisional | Back alignment and domain information |
|---|
Probab=98.03 E-value=0.00023 Score=66.71 Aligned_cols=164 Identities=23% Similarity=0.267 Sum_probs=94.2
Q ss_pred HHHHHHHHcCCcEEEEecCCCCCCchhHHhhhh---cCCCCccccccccccccCcccccc--chhhHHHhhhccCccccH
Q 017718 140 QLVRRAERAGFKAIALTVDTPRLGRREADIKNR---FTLPPFLTLKNFQGLDLGKMDEAN--DSGLAAYVAGQIDRSLSW 214 (367)
Q Consensus 140 ~~l~ra~~~G~~ai~itvd~p~~g~r~~~~~~~---~~~p~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~d~~~~~ 214 (367)
++++..++.|+.+|-|..|....+....+++.- ..+|- -.+.+- +....+.+.. ++...-.+....++. ..
T Consensus 65 ~~A~~y~~~GA~aISVlTe~~~F~Gs~~~l~~v~~~v~~Pv--L~KDFI-id~~QI~ea~~~GADavLLI~~~L~~~-~l 140 (247)
T PRK13957 65 QIAKTYETLGASAISVLTDQSYFGGSLEDLKSVSSELKIPV--LRKDFI-LDEIQIREARAFGASAILLIVRILTPS-QI 140 (247)
T ss_pred HHHHHHHHCCCcEEEEEcCCCcCCCCHHHHHHHHHhcCCCE--Eecccc-CCHHHHHHHHHcCCCEEEeEHhhCCHH-HH
Confidence 566778889999998888877766666555432 22231 111110 0000000000 000000000000110 11
Q ss_pred H---HHHhhcCCCEEEEecCCHHHHHHHHHcCCcEEEEcCCCCCCCCCccchHHHHHHHHHHhcCCCcEEEecCCCCHHH
Q 017718 215 K---WLQTITKLPILVKGVLTAEDARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTD 291 (367)
Q Consensus 215 ~---~l~~~~~~Pv~vK~v~~~~~a~~~~~~G~d~i~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~~~via~GGI~~~~d 291 (367)
+ ......++-++| .+-+.++++++.++|++.|-|-|..-.++ ....+...++...++..+.+|+.|||.+++|
T Consensus 141 ~~l~~~a~~lGle~LV-EVh~~~El~~a~~~ga~iiGINnRdL~t~---~vd~~~~~~L~~~ip~~~~~IsESGI~t~~d 216 (247)
T PRK13957 141 KSFLKHASSLGMDVLV-EVHTEDEAKLALDCGAEIIGINTRDLDTF---QIHQNLVEEVAAFLPPNIVKVGESGIESRSD 216 (247)
T ss_pred HHHHHHHHHcCCceEE-EECCHHHHHHHHhCCCCEEEEeCCCCccc---eECHHHHHHHHhhCCCCcEEEEcCCCCCHHH
Confidence 1 222334665555 56788889999999999887866432222 2233344455566666788999999999999
Q ss_pred HHHHHHcCCCEEEechHHHHH
Q 017718 292 VFKALALGASGIFIGRPVVYS 312 (367)
Q Consensus 292 v~kal~lGAd~V~ig~~~l~~ 312 (367)
+.+...+ ||+|.||+.+|.+
T Consensus 217 ~~~l~~~-~davLvG~~lm~~ 236 (247)
T PRK13957 217 LDKFRKL-VDAALIGTYFMEK 236 (247)
T ss_pred HHHHHHh-CCEEEECHHHhCC
Confidence 9997776 9999999999863
|
|
| >TIGR01304 IMP_DH_rel_2 IMP dehydrogenase family protein | Back alignment and domain information |
|---|
Probab=98.00 E-value=3.5e-05 Score=76.32 Aligned_cols=81 Identities=23% Similarity=0.370 Sum_probs=61.6
Q ss_pred CEEEEecCC----HHHHHHHHHcCCcEEEEcCCCCCCCC-CccchHHHHHHHHHHhcCCCcEEEecCCCCHHHHHHHHHc
Q 017718 224 PILVKGVLT----AEDARIAVQAGAAGIIVSNHGARQLD-YVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALAL 298 (367)
Q Consensus 224 Pv~vK~v~~----~~~a~~~~~~G~d~i~vs~~gg~~~~-~~~~~~~~l~~i~~~~~~~~~via~GGI~~~~dv~kal~l 298 (367)
.|.+|...+ .+.++.++++|+|.|++++.--.|.+ ++...+..|.++.+.+ ++|||+ |+|.+.+|+.+++.+
T Consensus 132 ~VtvkiRl~~~~~~e~a~~l~eAGad~I~ihgrt~~q~~~sg~~~p~~l~~~i~~~--~IPVI~-G~V~t~e~A~~~~~a 208 (369)
T TIGR01304 132 GVITAVRVSPQNAREIAPIVVKAGADLLVIQGTLVSAEHVSTSGEPLNLKEFIGEL--DVPVIA-GGVNDYTTALHLMRT 208 (369)
T ss_pred ceEEEEecCCcCHHHHHHHHHHCCCCEEEEeccchhhhccCCCCCHHHHHHHHHHC--CCCEEE-eCCCCHHHHHHHHHc
Confidence 388888754 36689999999999999543211222 2233456677777766 799998 999999999999999
Q ss_pred CCCEEEech
Q 017718 299 GASGIFIGR 307 (367)
Q Consensus 299 GAd~V~ig~ 307 (367)
|||+|++|+
T Consensus 209 GaDgV~~G~ 217 (369)
T TIGR01304 209 GAAGVIVGP 217 (369)
T ss_pred CCCEEEECC
Confidence 999999886
|
This model represents a family of proteins, often annotated as a putative IMP dehydrogenase, related to IMP dehydrogenase and GMP reductase. Most species with a member of this family belong to the high GC Gram-positive bacteria, and these also have the IMP dehydrogenase described by TIGRFAMs equivalog model TIGR01302. |
| >TIGR01182 eda Entner-Doudoroff aldolase | Back alignment and domain information |
|---|
Probab=97.98 E-value=0.00013 Score=66.64 Aligned_cols=167 Identities=15% Similarity=0.142 Sum_probs=106.0
Q ss_pred EEEEeecCCHHHHHHHHHHHHHcCCcEEEEecCCCCCCchhHHhhhhcCCCCcccc--ccccccccCccccccchhhHHH
Q 017718 126 FFQLYVYKDRNVVAQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLTL--KNFQGLDLGKMDEANDSGLAAY 203 (367)
Q Consensus 126 ~~QLy~~~d~~~~~~~l~ra~~~G~~ai~itvd~p~~g~r~~~~~~~~~~p~~~~~--~~~~~~~~~~~~~~~~~~~~~~ 203 (367)
.+-+....+.+...++++.+.+.|++.+-||+++|..-.--+.++..+ |. +.. .+....+ ..+......+++
T Consensus 10 liaVlr~~~~e~a~~~~~al~~~Gi~~iEit~~t~~a~~~i~~l~~~~--~~-~~vGAGTVl~~~---~a~~a~~aGA~F 83 (204)
T TIGR01182 10 IVPVIRIDDVDDALPLAKALIEGGLRVLEVTLRTPVALDAIRLLRKEV--PD-ALIGAGTVLNPE---QLRQAVDAGAQF 83 (204)
T ss_pred EEEEEecCCHHHHHHHHHHHHHcCCCEEEEeCCCccHHHHHHHHHHHC--CC-CEEEEEeCCCHH---HHHHHHHcCCCE
Confidence 445555778898889999999999999999999987434344555444 31 111 1100000 000000001111
Q ss_pred hhhccCccccHH--HHHhhcCCCEEEEecCCHHHHHHHHHcCCcEEEEcCCCCCCCCCccchHHHHHHHHHHhcCCCcEE
Q 017718 204 VAGQIDRSLSWK--WLQTITKLPILVKGVLTAEDARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVF 281 (367)
Q Consensus 204 ~~~~~d~~~~~~--~l~~~~~~Pv~vK~v~~~~~a~~~~~~G~d~i~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~~~vi 281 (367)
+. .|.++-+ ...+..++|++- +++++.++..+.++|+|.|.+.-.+ .-+|+..+..| +.-+ .+++++
T Consensus 84 iv---sP~~~~~v~~~~~~~~i~~iP-G~~TptEi~~A~~~Ga~~vKlFPA~---~~GG~~yikal---~~pl-p~i~~~ 152 (204)
T TIGR01182 84 IV---SPGLTPELAKHAQDHGIPIIP-GVATPSEIMLALELGITALKLFPAE---VSGGVKMLKAL---AGPF-PQVRFC 152 (204)
T ss_pred EE---CCCCCHHHHHHHHHcCCcEEC-CCCCHHHHHHHHHCCCCEEEECCch---hcCCHHHHHHH---hccC-CCCcEE
Confidence 11 2223222 223346888866 8999999999999999999996421 11234444443 3333 379999
Q ss_pred EecCCCCHHHHHHHHHcCCCEEEechHHH
Q 017718 282 LDGGVRRGTDVFKALALGASGIFIGRPVV 310 (367)
Q Consensus 282 a~GGI~~~~dv~kal~lGAd~V~ig~~~l 310 (367)
..|||.- +++...|.+||.+|++|+.+.
T Consensus 153 ptGGV~~-~N~~~~l~aGa~~vg~Gs~L~ 180 (204)
T TIGR01182 153 PTGGINL-ANVRDYLAAPNVACGGGSWLV 180 (204)
T ss_pred ecCCCCH-HHHHHHHhCCCEEEEEChhhc
Confidence 9999976 899999999999999999775
|
2-deydro-3-deoxyphosphogluconate aldolase (EC 4.1.2.14) is an enzyme of the Entner-Doudoroff pathway. This aldolase has another function, 4-hydroxy-2-oxoglutarate aldolase (EC 4.1.3.16) shown experimentally in Escherichia coli and Pseudomonas putida |
| >COG0134 TrpC Indole-3-glycerol phosphate synthase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=97.98 E-value=0.00024 Score=66.57 Aligned_cols=164 Identities=20% Similarity=0.269 Sum_probs=98.4
Q ss_pred HHHHHHHcCCcEEEEecCCCCCCchhHHhh---hhcCCCCccccccccccccCccccc--cchhhHHHhhhccCcc-c-c
Q 017718 141 LVRRAERAGFKAIALTVDTPRLGRREADIK---NRFTLPPFLTLKNFQGLDLGKMDEA--NDSGLAAYVAGQIDRS-L-S 213 (367)
Q Consensus 141 ~l~ra~~~G~~ai~itvd~p~~g~r~~~~~---~~~~~p~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~d~~-~-~ 213 (367)
+++.-++.|+.+|-|..|.+...-..++++ ....+|- -.+.+- +....+... .++...-.+....+.. + .
T Consensus 71 ia~~Ye~~GAa~iSVLTd~~~F~Gs~e~L~~v~~~v~~Pv--L~KDFi-iD~yQI~~Ar~~GADavLLI~~~L~~~~l~e 147 (254)
T COG0134 71 IAKAYEEGGAAAISVLTDPKYFQGSFEDLRAVRAAVDLPV--LRKDFI-IDPYQIYEARAAGADAVLLIVAALDDEQLEE 147 (254)
T ss_pred HHHHHHHhCCeEEEEecCccccCCCHHHHHHHHHhcCCCe--eeccCC-CCHHHHHHHHHcCcccHHHHHHhcCHHHHHH
Confidence 566667789999999999888655555553 3344441 111110 000000000 0110000111111111 1 1
Q ss_pred HHHHHhhcCCCEEEEecCCHHHHHHHHHcCCcEEEEcCCCCCCCCCccchHHHHHHHHHHhcCCCcEEEecCCCCHHHHH
Q 017718 214 WKWLQTITKLPILVKGVLTAEDARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVF 293 (367)
Q Consensus 214 ~~~l~~~~~~Pv~vK~v~~~~~a~~~~~~G~d~i~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~~~via~GGI~~~~dv~ 293 (367)
+.......++-++| .+.+.++++++.++|++-|-+-|..=+++.. ..+...++....+.++.+|+.+||.+++|+.
T Consensus 148 l~~~A~~LGm~~LV-EVh~~eEl~rAl~~ga~iIGINnRdL~tf~v---dl~~t~~la~~~p~~~~~IsESGI~~~~dv~ 223 (254)
T COG0134 148 LVDRAHELGMEVLV-EVHNEEELERALKLGAKIIGINNRDLTTLEV---DLETTEKLAPLIPKDVILISESGISTPEDVR 223 (254)
T ss_pred HHHHHHHcCCeeEE-EECCHHHHHHHHhCCCCEEEEeCCCcchhee---cHHHHHHHHhhCCCCcEEEecCCCCCHHHHH
Confidence 11222334666655 5788999999999999998887744333333 3333455555666678899999999999999
Q ss_pred HHHHcCCCEEEechHHHH
Q 017718 294 KALALGASGIFIGRPVVY 311 (367)
Q Consensus 294 kal~lGAd~V~ig~~~l~ 311 (367)
+....|||++.||+.+|.
T Consensus 224 ~l~~~ga~a~LVG~slM~ 241 (254)
T COG0134 224 RLAKAGADAFLVGEALMR 241 (254)
T ss_pred HHHHcCCCEEEecHHHhc
Confidence 999999999999999986
|
|
| >cd04724 Tryptophan_synthase_alpha Ttryptophan synthase (TRPS) alpha subunit (TSA) | Back alignment and domain information |
|---|
Probab=97.98 E-value=0.0008 Score=63.06 Aligned_cols=80 Identities=15% Similarity=0.211 Sum_probs=58.4
Q ss_pred CCHHHHHHHHHcCCcEEEE-cCCCCCC--CCCccchHHHHHHHHHHhcCCCcEEEecCCCCHHHHHHHHHcCCCEEEech
Q 017718 231 LTAEDARIAVQAGAAGIIV-SNHGARQ--LDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFIGR 307 (367)
Q Consensus 231 ~~~~~a~~~~~~G~d~i~v-s~~gg~~--~~~~~~~~~~l~~i~~~~~~~~~via~GGI~~~~dv~kal~lGAd~V~ig~ 307 (367)
.+.+..+.+.+...+.|.+ +-.|++. ....+...+.+.++++.. ++||+++|||++.+++.++... ||++.+|+
T Consensus 140 T~~~~i~~i~~~~~~~vy~~s~~g~tG~~~~~~~~~~~~i~~lr~~~--~~pI~vggGI~~~e~~~~~~~~-ADgvVvGS 216 (242)
T cd04724 140 TPDERIKKIAELASGFIYYVSRTGVTGARTELPDDLKELIKRIRKYT--DLPIAVGFGISTPEQAAEVAKY-ADGVIVGS 216 (242)
T ss_pred CCHHHHHHHHhhCCCCEEEEeCCCCCCCccCCChhHHHHHHHHHhcC--CCcEEEEccCCCHHHHHHHHcc-CCEEEECH
Confidence 4567777777756666665 3234332 212344557777777654 8999999999999999999999 99999999
Q ss_pred HHHHHh
Q 017718 308 PVVYSL 313 (367)
Q Consensus 308 ~~l~~l 313 (367)
.++.-+
T Consensus 217 aiv~~~ 222 (242)
T cd04724 217 ALVKII 222 (242)
T ss_pred HHHHHH
Confidence 887654
|
TPRS is a bifunctional tetrameric enzyme (2 alpha and 2 beta subunits) that catalyzes the last two steps of L-tryptophan biosynthesis. Alpha and beta subunit catalyze two distinct reactions which are both strongly stimulated by the formation of the complex. The alpha subunit catalyzes the cleavage of indole 3-glycerol phosphate (IGP) to indole and d-glyceraldehyde 3-phosphate (G3P). Indole is then channeled to the active site of the beta subunit, a PLP-dependent enzyme that catalyzes a replacement reaction to convert L-serine into L-tryptophan. |
| >TIGR03128 RuMP_HxlA 3-hexulose-6-phosphate synthase | Back alignment and domain information |
|---|
Probab=97.92 E-value=0.00034 Score=63.54 Aligned_cols=168 Identities=15% Similarity=0.143 Sum_probs=102.2
Q ss_pred hhHHHHHHHHHcCCcee-ec-CC----CCCCHHHHHhhCCC-ceEEEEeecCCHHHHHHHHHHHHHcCCcEEEEecCCCC
Q 017718 89 GEYATARAASAAGTIMT-LS-SW----STSSVEEVASTGPG-IRFFQLYVYKDRNVVAQLVRRAERAGFKAIALTVDTPR 161 (367)
Q Consensus 89 ~e~~~a~aa~~~G~~~~-vs-~~----~~~~~e~i~~~~~~-~~~~QLy~~~d~~~~~~~l~ra~~~G~~ai~itvd~p~ 161 (367)
.-..+++++ +.|+..+ ++ ++ ....++++++..++ ....-+... |++. ..++.+.++|++.+.++.-++.
T Consensus 13 ~a~~~~~~l-~~~v~~iev~~~l~~~~g~~~i~~l~~~~~~~~i~~d~k~~-d~~~--~~~~~~~~~Gad~i~vh~~~~~ 88 (206)
T TIGR03128 13 EALELAEKV-ADYVDIIEIGTPLIKNEGIEAVKEMKEAFPDRKVLADLKTM-DAGE--YEAEQAFAAGADIVTVLGVADD 88 (206)
T ss_pred HHHHHHHHc-ccCeeEEEeCCHHHHHhCHHHHHHHHHHCCCCEEEEEEeec-cchH--HHHHHHHHcCCCEEEEeccCCH
Confidence 345677777 6676644 33 12 11234556555442 233333222 4442 2467788999999887654321
Q ss_pred CCchhHHhhhhcCCCCccccccccccccCccccccchhhHHHhhhccCccccHHHHHhhcCCCEEEEec--C-CHHHHHH
Q 017718 162 LGRREADIKNRFTLPPFLTLKNFQGLDLGKMDEANDSGLAAYVAGQIDRSLSWKWLQTITKLPILVKGV--L-TAEDARI 238 (367)
Q Consensus 162 ~g~r~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~l~~~~~~Pv~vK~v--~-~~~~a~~ 238 (367)
. + ..+ ..++.++ .++++++-.. . ..+.++.
T Consensus 89 ~--------------------~----------------~~~----------~i~~~~~-~g~~~~~~~~~~~t~~~~~~~ 121 (206)
T TIGR03128 89 A--------------------T----------------IKG----------AVKAAKK-HGKEVQVDLINVKDKVKRAKE 121 (206)
T ss_pred H--------------------H----------------HHH----------HHHHHHH-cCCEEEEEecCCCChHHHHHH
Confidence 0 0 000 1123443 5888887643 2 2478888
Q ss_pred HHHcCCcEEEEcCCCCCCCCCccchHHHHHHHHHHhcCCCcEEEecCCCCHHHHHHHHHcCCCEEEechHHH
Q 017718 239 AVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFIGRPVV 310 (367)
Q Consensus 239 ~~~~G~d~i~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~~~via~GGI~~~~dv~kal~lGAd~V~ig~~~l 310 (367)
+.+.|+|.|.+. +|......++...+.+.++++.++ .+++.++||| +.+++.+++..|||.+.+||.++
T Consensus 122 ~~~~g~d~v~~~-pg~~~~~~~~~~~~~i~~l~~~~~-~~~i~v~GGI-~~~n~~~~~~~Ga~~v~vGsai~ 190 (206)
T TIGR03128 122 LKELGADYIGVH-TGLDEQAKGQNPFEDLQTILKLVK-EARVAVAGGI-NLDTIPDVIKLGPDIVIVGGAIT 190 (206)
T ss_pred HHHcCCCEEEEc-CCcCcccCCCCCHHHHHHHHHhcC-CCcEEEECCc-CHHHHHHHHHcCCCEEEEeehhc
Confidence 999999999884 222112233445666777776653 4677779999 88899999999999999999865
|
at the cost of also yielding formaldehyde. These latter species tend usually have a formaldehyde-activating enzyme to attach formaldehyde to the C1 carrier tetrahydromethanopterin. In these species, the enzyme is viewed as a lyase rather than a synthase and is called D-arabino 3-hexulose 6-phosphate formaldehyde lyase. Note that there is some overlap in specificity with the Escherichia coli enzyme 3-keto-L-gulonate 6-phosphate decarboxylase. |
| >cd00564 TMP_TenI Thiamine monophosphate synthase (TMP synthase)/TenI | Back alignment and domain information |
|---|
Probab=97.91 E-value=0.00015 Score=64.67 Aligned_cols=78 Identities=23% Similarity=0.236 Sum_probs=60.2
Q ss_pred CCHHHHHHHHHcCCcEEEEcCC--CCC-CCCCccchHHHHHHHHHHhcCCCcEEEecCCCCHHHHHHHHHcCCCEEEech
Q 017718 231 LTAEDARIAVQAGAAGIIVSNH--GAR-QLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFIGR 307 (367)
Q Consensus 231 ~~~~~a~~~~~~G~d~i~vs~~--gg~-~~~~~~~~~~~l~~i~~~~~~~~~via~GGI~~~~dv~kal~lGAd~V~ig~ 307 (367)
.+.+++..+.+.|+|+|.++.. +.. +....+..++.+.++++.. ++||++.|||. .+++.+++.+||++|.+|+
T Consensus 103 ~t~~~~~~~~~~g~d~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~pv~a~GGi~-~~~i~~~~~~Ga~~i~~g~ 179 (196)
T cd00564 103 HSLEEALRAEELGADYVGFGPVFPTPTKPGAGPPLGLELLREIAELV--EIPVVAIGGIT-PENAAEVLAAGADGVAVIS 179 (196)
T ss_pred CCHHHHHHHhhcCCCEEEECCccCCCCCCCCCCCCCHHHHHHHHHhC--CCCEEEECCCC-HHHHHHHHHcCCCEEEEeh
Confidence 5778899999999999998642 111 1111345677788877654 79999999995 7999999999999999999
Q ss_pred HHHH
Q 017718 308 PVVY 311 (367)
Q Consensus 308 ~~l~ 311 (367)
.++.
T Consensus 180 ~i~~ 183 (196)
T cd00564 180 AITG 183 (196)
T ss_pred Hhhc
Confidence 8753
|
TMP synthase catalyzes an important step in the thiamine biosynthesis pathway, the substitution of the pyrophosphate of 2-methyl-4-amino-5- hydroxymethylpyrimidine pyrophosphate by 4-methyl-5- (beta-hydroxyethyl) thiazole phosphate to yield thiamine phosphate. TenI is a enzymatically inactive regulatory protein involved in the regulation of several extracellular enzymes. This superfamily also contains other enzymatically inactive proteins with unknown functions. |
| >PRK05848 nicotinate-nucleotide pyrophosphorylase; Provisional | Back alignment and domain information |
|---|
Probab=97.90 E-value=0.00011 Score=69.98 Aligned_cols=84 Identities=17% Similarity=0.171 Sum_probs=65.9
Q ss_pred HHHhhcC-CCEEEEecCCHHHHHHHHHcCCcEEEEcCCCCCCCCCccchHHHHHHHHHHhc---CCCcEEEecCCCCHHH
Q 017718 216 WLQTITK-LPILVKGVLTAEDARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQ---GRIPVFLDGGVRRGTD 291 (367)
Q Consensus 216 ~l~~~~~-~Pv~vK~v~~~~~a~~~~~~G~d~i~vs~~gg~~~~~~~~~~~~l~~i~~~~~---~~~~via~GGI~~~~d 291 (367)
.+|+..+ ...+.-.+.+.|+++.+.++|+|.|.+.| .+.+.|.++++..+ .++.+.++||| +.+.
T Consensus 174 ~~k~~~p~~~~I~VEv~tleea~~A~~~GaDiI~LDn----------~~~e~l~~~v~~~~~~~~~~~ieAsGgI-t~~n 242 (273)
T PRK05848 174 HARKNIPFTAKIEIECESLEEAKNAMNAGADIVMCDN----------MSVEEIKEVVAYRNANYPHVLLEASGNI-TLEN 242 (273)
T ss_pred HHHHhCCCCceEEEEeCCHHHHHHHHHcCCCEEEECC----------CCHHHHHHHHHHhhccCCCeEEEEECCC-CHHH
Confidence 6666554 23344477899999999999999998876 25555666665433 26779999999 9999
Q ss_pred HHHHHHcCCCEEEechHHH
Q 017718 292 VFKALALGASGIFIGRPVV 310 (367)
Q Consensus 292 v~kal~lGAd~V~ig~~~l 310 (367)
+.++..+|+|.+.+|+++.
T Consensus 243 i~~ya~~GvD~IsvG~l~~ 261 (273)
T PRK05848 243 INAYAKSGVDAISSGSLIH 261 (273)
T ss_pred HHHHHHcCCCEEEeChhhc
Confidence 9999999999999999765
|
|
| >cd04732 HisA HisA | Back alignment and domain information |
|---|
Probab=97.88 E-value=8.3e-05 Score=68.85 Aligned_cols=76 Identities=34% Similarity=0.436 Sum_probs=62.2
Q ss_pred HHHHHHHHHcCCcEEEEcCCCCCCCCCccchHHHHHHHHHHhcCCCcEEEecCCCCHHHHHHHHHcCCCEEEechHHHH
Q 017718 233 AEDARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFIGRPVVY 311 (367)
Q Consensus 233 ~~~a~~~~~~G~d~i~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~~~via~GGI~~~~dv~kal~lGAd~V~ig~~~l~ 311 (367)
.+.|+.+.+.|+|.+.+..-.+. ..+....++.+.++.+.+ .+||++.|||++.+|+.+++..|||.|++|+..+.
T Consensus 32 ~~~a~~~~~~g~d~l~v~dl~~~-~~~~~~~~~~i~~i~~~~--~~pv~~~GgI~~~e~~~~~~~~Gad~vvigs~~l~ 107 (234)
T cd04732 32 VEVAKKWEEAGAKWLHVVDLDGA-KGGEPVNLELIEEIVKAV--GIPVQVGGGIRSLEDIERLLDLGVSRVIIGTAAVK 107 (234)
T ss_pred HHHHHHHHHcCCCEEEEECCCcc-ccCCCCCHHHHHHHHHhc--CCCEEEeCCcCCHHHHHHHHHcCCCEEEECchHHh
Confidence 46788899999999999753221 123455788888888877 79999999999999999999999999999997753
|
Phosphoribosylformimino-5-aminoimidazole carboxamide ribonucleotide (ProFAR) isomerase catalyzes the fourth step in histidine biosynthesis, an isomerisation of the aminoaldose moiety of ProFAR to the aminoketose of PRFAR (N-(5'-phospho-D-1'-ribulosylformimino)-5-amino-1-(5''-phospho-ribosyl)-4-imidazolecarboxamide). In bacteria and archaea, ProFAR isomerase is encoded by the HisA gene. |
| >cd00945 Aldolase_Class_I Class I aldolases | Back alignment and domain information |
|---|
Probab=97.87 E-value=0.0013 Score=58.53 Aligned_cols=170 Identities=23% Similarity=0.140 Sum_probs=106.6
Q ss_pred hhHHHHHHHHHcCCceeecCCCCCCHHHHHhhCC---CceEEEEeecCC----HHHHHHHHHHHHHcCCcEEEEecCCCC
Q 017718 89 GEYATARAASAAGTIMTLSSWSTSSVEEVASTGP---GIRFFQLYVYKD----RNVVAQLVRRAERAGFKAIALTVDTPR 161 (367)
Q Consensus 89 ~e~~~a~aa~~~G~~~~vs~~~~~~~e~i~~~~~---~~~~~QLy~~~d----~~~~~~~l~ra~~~G~~ai~itvd~p~ 161 (367)
.-..+.+.+.+.|+..++-.. ..++.+.+..+ -+.++++.. .. .+...+.+++++++|++++.+... .
T Consensus 14 ~~~~~~~~~~~~gv~gi~~~g--~~i~~~~~~~~~~~~~v~~~v~~-~~~~~~~~~~~~~a~~a~~~Gad~i~v~~~--~ 88 (201)
T cd00945 14 DIAKLCDEAIEYGFAAVCVNP--GYVRLAADALAGSDVPVIVVVGF-PTGLTTTEVKVAEVEEAIDLGADEIDVVIN--I 88 (201)
T ss_pred HHHHHHHHHHHhCCcEEEECH--HHHHHHHHHhCCCCCeEEEEecC-CCCCCcHHHHHHHHHHHHHcCCCEEEEecc--H
Confidence 345788888888887654322 22333333322 345566542 23 466777889999999999987442 1
Q ss_pred CCchhHHhhhhcCCCCccccccccccccCccccccchhhHHHhhhccCccc-cHHHHHhh--cCCCEEEEecC----CHH
Q 017718 162 LGRREADIKNRFTLPPFLTLKNFQGLDLGKMDEANDSGLAAYVAGQIDRSL-SWKWLQTI--TKLPILVKGVL----TAE 234 (367)
Q Consensus 162 ~g~r~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~-~~~~l~~~--~~~Pv~vK~v~----~~~ 234 (367)
. .+ |.. + . +.-. .++.+.+. .++|++++... +.+
T Consensus 89 ~-~~----------~~~----~-----------------~-------~~~~~~~~~i~~~~~~~~pv~iy~~p~~~~~~~ 129 (201)
T cd00945 89 G-SL----------KEG----D-----------------W-------EEVLEEIAAVVEAADGGLPLKVILETRGLKTAD 129 (201)
T ss_pred H-HH----------hCC----C-----------------H-------HHHHHHHHHHHHHhcCCceEEEEEECCCCCCHH
Confidence 0 00 000 0 0 0001 12355555 48999999872 444
Q ss_pred H----HHHHHHcCCcEEEEcCCCCCCCCCccchHHHHHHHHHHhcCCCcEEEecCCCCHHHHHHHHHcCCCEEEec
Q 017718 235 D----ARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFIG 306 (367)
Q Consensus 235 ~----a~~~~~~G~d~i~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~~~via~GGI~~~~dv~kal~lGAd~V~ig 306 (367)
. ++.+.+.|+++|..+. |.. .+...++.+.++++..+.++++++.||+.+.+++..++.+||+++.+|
T Consensus 130 ~~~~~~~~~~~~g~~~iK~~~-~~~---~~~~~~~~~~~i~~~~~~~~~v~~~gg~~~~~~~~~~~~~Ga~g~~~g 201 (201)
T cd00945 130 EIAKAARIAAEAGADFIKTST-GFG---GGGATVEDVKLMKEAVGGRVGVKAAGGIKTLEDALAAIEAGADGIGTS 201 (201)
T ss_pred HHHHHHHHHHHhCCCEEEeCC-CCC---CCCCCHHHHHHHHHhcccCCcEEEECCCCCHHHHHHHHHhccceeecC
Confidence 4 3345789999999864 211 122355666777666544689999999999999999999999999875
|
The class I aldolases use an active-site lysine which stablilzes a reaction intermediates via Schiff base formation, and have TIM beta/alpha barrel fold. The members of this family include 2-keto-3-deoxy-6-phosphogluconate (KDPG) and 2-keto-4-hydroxyglutarate (KHG) aldolases, transaldolase, dihydrodipicolinate synthase sub-family, Type I 3-dehydroquinate dehydratase, DeoC and DhnA proteins, and metal-independent fructose-1,6-bisphosphate aldolase. Although structurally similar, the class II aldolases use a different mechanism and are believed to have an independent evolutionary origin. |
| >TIGR00875 fsa_talC_mipB fructose-6-phosphate aldolase, TalC/MipB family | Back alignment and domain information |
|---|
Probab=97.87 E-value=0.0035 Score=57.61 Aligned_cols=174 Identities=20% Similarity=0.171 Sum_probs=112.5
Q ss_pred hhHHHHHHHHHcCCceeecCCCC------CCHH----HHHhhCCCceEEEEeecCCHHHHHHHHHHHHHcCCcEEEEecC
Q 017718 89 GEYATARAASAAGTIMTLSSWST------SSVE----EVASTGPGIRFFQLYVYKDRNVVAQLVRRAERAGFKAIALTVD 158 (367)
Q Consensus 89 ~e~~~a~aa~~~G~~~~vs~~~~------~~~e----~i~~~~~~~~~~QLy~~~d~~~~~~~l~ra~~~G~~ai~itvd 158 (367)
.|+.-.+.+.+.|..-.++|..+ .+.+ ++.+..+++..+|++ ..|.+.+.+..++..+..- .++|-+
T Consensus 8 Ad~~~i~~~~~~~~i~GvTTNPsll~k~g~~~~~~~~~i~~~~~g~vs~qv~-~~~~~~mi~~a~~l~~~~~-~i~iKI- 84 (213)
T TIGR00875 8 ANVEEIKKAAELGILAGVTTNPSLIAKEGRSFWEVLKEIQEAVEGPVSAETI-SLDAEGMVEEAKELAKLAP-NIVVKI- 84 (213)
T ss_pred CCHHHHHHHHhcCCcceEeCCHHHHHhcCCCHHHHHHHHHHhcCCcEEEEEe-eCCHHHHHHHHHHHHHhCC-CeEEEe-
Confidence 56777888888888777776532 2233 344444567889997 5565555444444444432 233321
Q ss_pred CCCCCchhHHhhhhcCCCCccccccccccccCccccccchhhHHHhhhccCccccHHHHHhhcCCCEEEEecCCHHHHHH
Q 017718 159 TPRLGRREADIKNRFTLPPFLTLKNFQGLDLGKMDEANDSGLAAYVAGQIDRSLSWKWLQTITKLPILVKGVLTAEDARI 238 (367)
Q Consensus 159 ~p~~g~r~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~l~~~~~~Pv~vK~v~~~~~a~~ 238 (367)
|+ +.. +. . ..+.|++ -++++.+-.+.+.+.|..
T Consensus 85 -P~------------------T~~----------------Gl-~----------A~~~L~~-~Gi~v~~T~vfs~~Qa~~ 117 (213)
T TIGR00875 85 -PM------------------TSE----------------GL-K----------AVKILKK-EGIKTNVTLVFSAAQALL 117 (213)
T ss_pred -CC------------------CHH----------------HH-H----------HHHHHHH-CCCceeEEEecCHHHHHH
Confidence 11 000 00 0 1113333 488999999999999999
Q ss_pred HHHcCCcEEEEcCCCCCCCCCccchHHHHHHHHHHh---cCCCcEEEecCCCCHHHHHHHHHcCCCEEEechHHHHHhhc
Q 017718 239 AVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKAT---QGRIPVFLDGGVRRGTDVFKALALGASGIFIGRPVVYSLAA 315 (367)
Q Consensus 239 ~~~~G~d~i~vs~~gg~~~~~~~~~~~~l~~i~~~~---~~~~~via~GGI~~~~dv~kal~lGAd~V~ig~~~l~~l~~ 315 (367)
+.++|+++|.. .=||--+.+....+.+.++.+.+ +.+..|++.+ +++..++.+++.+|||.|-+.-.++..+..
T Consensus 118 Aa~aGa~yisp--yvgRi~d~g~dg~~~v~~~~~~~~~~~~~tkIlaAS-~r~~~~v~~~~~~G~d~vTip~~vl~~l~~ 194 (213)
T TIGR00875 118 AAKAGATYVSP--FVGRLDDIGGDGMKLIEEVKTIFENHAPDTEVIAAS-VRHPRHVLEAALIGADIATMPLDVMQQLFN 194 (213)
T ss_pred HHHcCCCEEEe--ecchHHHcCCCHHHHHHHHHHHHHHcCCCCEEEEec-cCCHHHHHHHHHcCCCEEEcCHHHHHHHHc
Confidence 99999998876 33443344455566666666554 2367776655 999999999999999999999988887653
|
This model represents a family that includes the E. coli transaldolase homologs TalC and MipB, both shown to be fructose-6-phosphate aldolases rather than transaldolases as previously thought. It is related to but distinct from the transaldolase family of E. coli TalA and TalB. The member from Bacillus subtilis becomes phosphorylated during early stationary phase but not during exponential growth. |
| >PRK07114 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional | Back alignment and domain information |
|---|
Probab=97.86 E-value=0.00049 Score=63.56 Aligned_cols=169 Identities=13% Similarity=0.148 Sum_probs=105.3
Q ss_pred EEEEeecCCHHHHHHHHHHHHHcCCcEEEEecCCCCCCchhHHhhhhcC--CCCcccc--ccccccccCccccccchhhH
Q 017718 126 FFQLYVYKDRNVVAQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFT--LPPFLTL--KNFQGLDLGKMDEANDSGLA 201 (367)
Q Consensus 126 ~~QLy~~~d~~~~~~~l~ra~~~G~~ai~itvd~p~~g~r~~~~~~~~~--~p~~~~~--~~~~~~~~~~~~~~~~~~~~ 201 (367)
.+=++...+.+...++++.+.+.|++.+-||+++|..-...+.++..+. .|. +.. ......+ ..+......+
T Consensus 17 vi~Vvr~~~~~~a~~~~~al~~gGi~~iEiT~~tp~a~~~i~~l~~~~~~~~p~-~~vGaGTVl~~e---~a~~a~~aGA 92 (222)
T PRK07114 17 MVPVFYHADVEVAKKVIKACYDGGARVFEFTNRGDFAHEVFAELVKYAAKELPG-MILGVGSIVDAA---TAALYIQLGA 92 (222)
T ss_pred EEEEEEcCCHHHHHHHHHHHHHCCCCEEEEeCCCCcHHHHHHHHHHHHHhhCCC-eEEeeEeCcCHH---HHHHHHHcCC
Confidence 4445557889999999999999999999999999885444455543331 121 111 0000000 0000000011
Q ss_pred HHhhhccCccccHH--HHHhhcCCCEEEEecCCHHHHHHHHHcCCcEEEEcCCCCCCCCCccchHHHHHHHHHHhcCCCc
Q 017718 202 AYVAGQIDRSLSWK--WLQTITKLPILVKGVLTAEDARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIP 279 (367)
Q Consensus 202 ~~~~~~~d~~~~~~--~l~~~~~~Pv~vK~v~~~~~a~~~~~~G~d~i~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~~~ 279 (367)
+++. .|.++-+ ......++|++ =+++++.++..+.++|++.|-+.-.+ ..|+. .++.+..-++ .++
T Consensus 93 ~FiV---sP~~~~~v~~~~~~~~i~~i-PG~~TpsEi~~A~~~Ga~~vKlFPA~----~~G~~---~ikal~~p~p-~i~ 160 (222)
T PRK07114 93 NFIV---TPLFNPDIAKVCNRRKVPYS-PGCGSLSEIGYAEELGCEIVKLFPGS----VYGPG---FVKAIKGPMP-WTK 160 (222)
T ss_pred CEEE---CCCCCHHHHHHHHHcCCCEe-CCCCCHHHHHHHHHCCCCEEEECccc----ccCHH---HHHHHhccCC-CCe
Confidence 1111 1222222 22234578885 48899999999999999999996311 12333 3333333332 789
Q ss_pred EEEecCCCC-HHHHHHHHHcCCCEEEechHHH
Q 017718 280 VFLDGGVRR-GTDVFKALALGASGIFIGRPVV 310 (367)
Q Consensus 280 via~GGI~~-~~dv~kal~lGAd~V~ig~~~l 310 (367)
++..|||.- .+++..++.+||.+|++|+.+.
T Consensus 161 ~~ptGGV~~~~~n~~~yl~aGa~avg~Gs~L~ 192 (222)
T PRK07114 161 IMPTGGVEPTEENLKKWFGAGVTCVGMGSKLI 192 (222)
T ss_pred EEeCCCCCcchhcHHHHHhCCCEEEEEChhhc
Confidence 999999985 5899999999999999999664
|
|
| >PRK00748 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Validated | Back alignment and domain information |
|---|
Probab=97.85 E-value=0.00018 Score=66.58 Aligned_cols=76 Identities=28% Similarity=0.351 Sum_probs=62.5
Q ss_pred HHHHHHHHHcCCcEEEEcCCCCCCCCCccchHHHHHHHHHHhcCCCcEEEecCCCCHHHHHHHHHcCCCEEEechHHHH
Q 017718 233 AEDARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFIGRPVVY 311 (367)
Q Consensus 233 ~~~a~~~~~~G~d~i~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~~~via~GGI~~~~dv~kal~lGAd~V~ig~~~l~ 311 (367)
.+.|+...+.|+|.+.+..--|. ..+....++.+.++.+.+ .+||+++|||++.+|+.+++.+||+.|.+|+.++-
T Consensus 33 ~~~a~~~~~~g~~~i~v~dld~~-~~g~~~~~~~i~~i~~~~--~~pv~~~GGI~~~ed~~~~~~~Ga~~vilg~~~l~ 108 (233)
T PRK00748 33 VAQAKAWEDQGAKWLHLVDLDGA-KAGKPVNLELIEAIVKAV--DIPVQVGGGIRSLETVEALLDAGVSRVIIGTAAVK 108 (233)
T ss_pred HHHHHHHHHcCCCEEEEEeCCcc-ccCCcccHHHHHHHHHHC--CCCEEEcCCcCCHHHHHHHHHcCCCEEEECchHHh
Confidence 35588889999999999753221 223456788898888876 79999999999999999999999999999998764
|
|
| >CHL00162 thiG thiamin biosynthesis protein G; Validated | Back alignment and domain information |
|---|
Probab=97.84 E-value=8.2e-05 Score=69.15 Aligned_cols=86 Identities=20% Similarity=0.321 Sum_probs=66.7
Q ss_pred CCCEEEEecCCHHHHHHHHHcCCcEEEEcCCC-CCCCCCccchHHHHHHHHHHhcCCCcEEEecCCCCHHHHHHHHHcCC
Q 017718 222 KLPILVKGVLTAEDARIAVQAGAAGIIVSNHG-ARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGA 300 (367)
Q Consensus 222 ~~Pv~vK~v~~~~~a~~~~~~G~d~i~vs~~g-g~~~~~~~~~~~~l~~i~~~~~~~~~via~GGI~~~~dv~kal~lGA 300 (367)
+.-|+.=...++-.|++++++|+..|.--+.. |+ .-|..+...|..|++.. ++||+.++||.+++|+.+++.+||
T Consensus 137 GF~VlPY~~~D~v~a~rLed~Gc~aVMPlgsPIGS--g~Gl~n~~~l~~i~e~~--~vpVivdAGIgt~sDa~~AmElGa 212 (267)
T CHL00162 137 GFTVLPYINADPMLAKHLEDIGCATVMPLGSPIGS--GQGLQNLLNLQIIIENA--KIPVIIDAGIGTPSEASQAMELGA 212 (267)
T ss_pred CCEEeecCCCCHHHHHHHHHcCCeEEeeccCcccC--CCCCCCHHHHHHHHHcC--CCcEEEeCCcCCHHHHHHHHHcCC
Confidence 44455445577888999999999998764321 11 12455667777777654 799999999999999999999999
Q ss_pred CEEEechHHHH
Q 017718 301 SGIFIGRPVVY 311 (367)
Q Consensus 301 d~V~ig~~~l~ 311 (367)
|+|.+.+.+..
T Consensus 213 DgVL~nSaIak 223 (267)
T CHL00162 213 SGVLLNTAVAQ 223 (267)
T ss_pred CEEeecceeec
Confidence 99999998864
|
|
| >PRK13802 bifunctional indole-3-glycerol phosphate synthase/tryptophan synthase subunit beta; Provisional | Back alignment and domain information |
|---|
Probab=97.83 E-value=0.00048 Score=73.41 Aligned_cols=164 Identities=21% Similarity=0.259 Sum_probs=97.1
Q ss_pred HHHHHHHHcCCcEEEEecCCCCCCchhHHhhh---hcCCCCccccccccccccCcccccc--chhhHHHhhhccCccccH
Q 017718 140 QLVRRAERAGFKAIALTVDTPRLGRREADIKN---RFTLPPFLTLKNFQGLDLGKMDEAN--DSGLAAYVAGQIDRSLSW 214 (367)
Q Consensus 140 ~~l~ra~~~G~~ai~itvd~p~~g~r~~~~~~---~~~~p~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~d~~~~~ 214 (367)
++++.-++.|+.+|-|..|-...+--..+++. ...+|- -.+.+. ++...+.+.. ++...-.+....++. .+
T Consensus 74 ~~a~~y~~~GA~aiSVlTe~~~F~Gs~~~l~~vr~~v~~Pv--LrKDFI-id~~QI~ea~~~GADavLLI~~~L~~~-~l 149 (695)
T PRK13802 74 ALAREYEQGGASAISVLTEGRRFLGSLDDFDKVRAAVHIPV--LRKDFI-VTDYQIWEARAHGADLVLLIVAALDDA-QL 149 (695)
T ss_pred HHHHHHHHcCCcEEEEecCcCcCCCCHHHHHHHHHhCCCCE--Eecccc-CCHHHHHHHHHcCCCEeehhHhhcCHH-HH
Confidence 45666778999999998887776655555543 333331 111110 0000000000 000000000111110 12
Q ss_pred H---HHHhhcCCCEEEEecCCHHHHHHHHHcCCcEEEEcCCCCCCCCCccchHHHHHHHHHHhcCCCcEEEecCCCCHHH
Q 017718 215 K---WLQTITKLPILVKGVLTAEDARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTD 291 (367)
Q Consensus 215 ~---~l~~~~~~Pv~vK~v~~~~~a~~~~~~G~d~i~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~~~via~GGI~~~~d 291 (367)
+ ......++-++| .+-+.++++++.++|++.|-|-|.- +.+-....+...++...++.++.+|+.+||.+++|
T Consensus 150 ~~l~~~a~~lGme~Lv-Evh~~~el~~a~~~ga~iiGINnRd---L~tf~vd~~~t~~L~~~ip~~~~~VsESGI~~~~d 225 (695)
T PRK13802 150 KHLLDLAHELGMTVLV-ETHTREEIERAIAAGAKVIGINARN---LKDLKVDVNKYNELAADLPDDVIKVAESGVFGAVE 225 (695)
T ss_pred HHHHHHHHHcCCeEEE-EeCCHHHHHHHHhCCCCEEEEeCCC---CccceeCHHHHHHHHhhCCCCcEEEEcCCCCCHHH
Confidence 2 222334666655 5788999999999999988886633 33322334444455556666788999999999999
Q ss_pred HHHHHHcCCCEEEechHHHH
Q 017718 292 VFKALALGASGIFIGRPVVY 311 (367)
Q Consensus 292 v~kal~lGAd~V~ig~~~l~ 311 (367)
+.++..+|||+|.||+.+|.
T Consensus 226 ~~~l~~~G~davLIGeslm~ 245 (695)
T PRK13802 226 VEDYARAGADAVLVGEGVAT 245 (695)
T ss_pred HHHHHHCCCCEEEECHHhhC
Confidence 99999999999999998865
|
|
| >TIGR00126 deoC deoxyribose-phosphate aldolase | Back alignment and domain information |
|---|
Probab=97.82 E-value=0.00027 Score=64.86 Aligned_cols=67 Identities=28% Similarity=0.319 Sum_probs=51.4
Q ss_pred HHHHHHcCCcEEEEcCCCCCCCCCccchHHHHHHHHHHhcCCCcEEEecCCCCHHHHHHHHHcCCCEEEec
Q 017718 236 ARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFIG 306 (367)
Q Consensus 236 a~~~~~~G~d~i~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~~~via~GGI~~~~dv~kal~lGAd~V~ig 306 (367)
++.+.++|+|+|-.|. | +..+..+.+.+..+++.++++++|-++|||++.+|+++++.+||+-++..
T Consensus 138 ~~ia~eaGADfvKTsT-G---f~~~gat~~dv~~m~~~v~~~v~IKaaGGirt~~~a~~~i~aGa~riGts 204 (211)
T TIGR00126 138 CEICIDAGADFVKTST-G---FGAGGATVEDVRLMRNTVGDTIGVKASGGVRTAEDAIAMIEAGASRIGAS 204 (211)
T ss_pred HHHHHHhCCCEEEeCC-C---CCCCCCCHHHHHHHHHHhccCCeEEEeCCCCCHHHHHHHHHHhhHHhCcc
Confidence 6778999999999863 2 11223455555555566666899999999999999999999999987543
|
Deoxyribose-phosphate aldolase is involved in the catabolism of nucleotides and deoxyriibonucleotides. The catalytic process is as follows: 2-deoxy-D-ribose 5-phosphate = D-glyceraldehyde 3-phosphate + acetaldehyde. It is found in both gram-postive and gram-negative bacteria. |
| >TIGR00078 nadC nicotinate-nucleotide pyrophosphorylase | Back alignment and domain information |
|---|
Probab=97.82 E-value=0.00094 Score=63.45 Aligned_cols=86 Identities=22% Similarity=0.214 Sum_probs=65.4
Q ss_pred cHHHHHhhcC-CCEEEEecCCHHHHHHHHHcCCcEEEEcCCCCCCCCCccchHHHHHHHHHHhcCCCcEEEecCCCCHHH
Q 017718 213 SWKWLQTITK-LPILVKGVLTAEDARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTD 291 (367)
Q Consensus 213 ~~~~l~~~~~-~Pv~vK~v~~~~~a~~~~~~G~d~i~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~~~via~GGI~~~~d 291 (367)
.++.+|+..+ ...+--.+-+.++++.+.++|+|+|-+.| -..+.++++.+.++.++|+.++||| +.++
T Consensus 167 av~~~r~~~~~~~~Igvev~t~eea~~A~~~gaDyI~ld~----------~~~e~lk~~v~~~~~~ipi~AsGGI-~~~n 235 (265)
T TIGR00078 167 AVKRARAAAPFALKIEVEVESLEEAEEAAEAGADIIMLDN----------MKPEEIKEAVQLLKGRVLLEASGGI-TLDN 235 (265)
T ss_pred HHHHHHHhCCCCCeEEEEeCCHHHHHHHHHcCCCEEEECC----------CCHHHHHHHHHHhcCCCcEEEECCC-CHHH
Confidence 3457777664 23334456789999999999999999865 2225566666655446999999999 6899
Q ss_pred HHHHHHcCCCEEEechHH
Q 017718 292 VFKALALGASGIFIGRPV 309 (367)
Q Consensus 292 v~kal~lGAd~V~ig~~~ 309 (367)
+......|+|.+.+|..+
T Consensus 236 i~~~a~~Gvd~Isvgait 253 (265)
T TIGR00078 236 LEEYAETGVDVISSGALT 253 (265)
T ss_pred HHHHHHcCCCEEEeCHHH
Confidence 999999999999997644
|
Synonym: quinolinate phosphoribosyltransferase (decarboxylating) |
| >PLN02411 12-oxophytodienoate reductase | Back alignment and domain information |
|---|
Probab=97.81 E-value=0.00092 Score=67.04 Aligned_cols=94 Identities=13% Similarity=0.020 Sum_probs=61.8
Q ss_pred HHHHhhcC-CCEEEEecCC---------------HHHHHHHHHc------CCcEEEEcCCCCC---CCC---Cccc--hH
Q 017718 215 KWLQTITK-LPILVKGVLT---------------AEDARIAVQA------GAAGIIVSNHGAR---QLD---YVPA--TI 264 (367)
Q Consensus 215 ~~l~~~~~-~Pv~vK~v~~---------------~~~a~~~~~~------G~d~i~vs~~gg~---~~~---~~~~--~~ 264 (367)
+.+|+.++ -.|.+|+... .+.++.+.+. |+|+|.|+..... ... .++. ..
T Consensus 223 ~aVr~~vg~d~vgvRiS~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~vd~i~vs~g~~~~~~~~~~~~~~~~~~~~ 302 (391)
T PLN02411 223 QAVVSAIGADRVGVRVSPAIDHLDATDSDPLNLGLAVVERLNKLQLQNGSKLAYLHVTQPRYTAYGQTESGRHGSEEEEA 302 (391)
T ss_pred HHHHHHcCCCeEEEEEcccccccCCCCCcchhhHHHHHHHHHHHHhhcCCCeEEEEecCCcccccCCCcccccCCccchh
Confidence 37888774 2588888731 1124444442 5999999852110 000 0111 11
Q ss_pred HHHHHHHHHhcCCCcEEEecCCCCHHHHHHHHHcC-CCEEEechHHHH
Q 017718 265 MALEEVVKATQGRIPVFLDGGVRRGTDVFKALALG-ASGIFIGRPVVY 311 (367)
Q Consensus 265 ~~l~~i~~~~~~~~~via~GGI~~~~dv~kal~lG-Ad~V~ig~~~l~ 311 (367)
....++++.+ ++|||+.|+| +.+++.++++.| ||+|.+||++|.
T Consensus 303 ~~a~~ik~~v--~~pvi~~G~i-~~~~a~~~l~~g~aDlV~~gR~~ia 347 (391)
T PLN02411 303 QLMRTLRRAY--QGTFMCSGGF-TRELGMQAVQQGDADLVSYGRLFIS 347 (391)
T ss_pred HHHHHHHHHc--CCCEEEECCC-CHHHHHHHHHcCCCCEEEECHHHHh
Confidence 3346677766 7899999999 679999999999 999999999985
|
|
| >PRK05742 nicotinate-nucleotide pyrophosphorylase; Provisional | Back alignment and domain information |
|---|
Probab=97.80 E-value=0.0014 Score=62.65 Aligned_cols=85 Identities=22% Similarity=0.280 Sum_probs=64.1
Q ss_pred HHHHHhhcC-CCEEEEecCCHHHHHHHHHcCCcEEEEcCCCCCCCCCccchHHHHHHHHHHhcCCCcEEEecCCCCHHHH
Q 017718 214 WKWLQTITK-LPILVKGVLTAEDARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDV 292 (367)
Q Consensus 214 ~~~l~~~~~-~Pv~vK~v~~~~~a~~~~~~G~d~i~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~~~via~GGI~~~~dv 292 (367)
++.+|+..+ .+| --.+-+.++++.+.++|+|+|.+.| ...+.+.++.+..+.++|+.++||| +.+.+
T Consensus 180 v~~~r~~~~~~~I-~VEv~tleea~eA~~~gaD~I~LD~----------~~~e~l~~~v~~~~~~i~leAsGGI-t~~ni 247 (277)
T PRK05742 180 VAAAHRIAPGKPV-EVEVESLDELRQALAAGADIVMLDE----------LSLDDMREAVRLTAGRAKLEASGGI-NESTL 247 (277)
T ss_pred HHHHHHhCCCCeE-EEEeCCHHHHHHHHHcCCCEEEECC----------CCHHHHHHHHHHhCCCCcEEEECCC-CHHHH
Confidence 445555432 333 3345789999999999999998854 2344566666555458999999999 68999
Q ss_pred HHHHHcCCCEEEechHHH
Q 017718 293 FKALALGASGIFIGRPVV 310 (367)
Q Consensus 293 ~kal~lGAd~V~ig~~~l 310 (367)
.++...|+|.+.+|.+..
T Consensus 248 ~~~a~tGvD~Isvg~lt~ 265 (277)
T PRK05742 248 RVIAETGVDYISIGAMTK 265 (277)
T ss_pred HHHHHcCCCEEEEChhhc
Confidence 999999999999998654
|
|
| >PRK08649 inosine 5-monophosphate dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=97.77 E-value=0.00012 Score=72.73 Aligned_cols=88 Identities=19% Similarity=0.268 Sum_probs=61.8
Q ss_pred HHHhhcCCCEEEEec--CCHHHHHHHHHcCCcEEEEcCCCCCCCCCccc-hHHHHHHHHHHhcCCCcEEEecCCCCHHHH
Q 017718 216 WLQTITKLPILVKGV--LTAEDARIAVQAGAAGIIVSNHGARQLDYVPA-TIMALEEVVKATQGRIPVFLDGGVRRGTDV 292 (367)
Q Consensus 216 ~l~~~~~~Pv~vK~v--~~~~~a~~~~~~G~d~i~vs~~gg~~~~~~~~-~~~~l~~i~~~~~~~~~via~GGI~~~~dv 292 (367)
.+++. .+++.++.. ...+-++.+.++|+|.|+++++...+.+.+.. .+..+.++.+.. ++|||+ |+|.+.+++
T Consensus 126 ~~~~~-~V~v~vr~~~~~~~e~a~~l~eaGvd~I~vhgrt~~~~h~~~~~~~~~i~~~ik~~--~ipVIa-G~V~t~e~A 201 (368)
T PRK08649 126 EIRDA-GVIVAVSLSPQRAQELAPTVVEAGVDLFVIQGTVVSAEHVSKEGEPLNLKEFIYEL--DVPVIV-GGCVTYTTA 201 (368)
T ss_pred HHHhC-eEEEEEecCCcCHHHHHHHHHHCCCCEEEEeccchhhhccCCcCCHHHHHHHHHHC--CCCEEE-eCCCCHHHH
Confidence 55553 455544442 13467899999999999994322123333332 345566666655 799999 999999999
Q ss_pred HHHHHcCCCEEEech
Q 017718 293 FKALALGASGIFIGR 307 (367)
Q Consensus 293 ~kal~lGAd~V~ig~ 307 (367)
.+++.+|||+|++|+
T Consensus 202 ~~l~~aGAD~V~VG~ 216 (368)
T PRK08649 202 LHLMRTGAAGVLVGI 216 (368)
T ss_pred HHHHHcCCCEEEECC
Confidence 999999999999996
|
|
| >COG0214 SNZ1 Pyridoxine biosynthesis enzyme [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=97.77 E-value=0.00021 Score=65.43 Aligned_cols=35 Identities=40% Similarity=0.765 Sum_probs=31.1
Q ss_pred CCcE--EEecCCCCHHHHHHHHHcCCCEEEechHHHH
Q 017718 277 RIPV--FLDGGVRRGTDVFKALALGASGIFIGRPVVY 311 (367)
Q Consensus 277 ~~~v--ia~GGI~~~~dv~kal~lGAd~V~ig~~~l~ 311 (367)
++|| |+.|||-|+.|++-.+.||||+|++|+.++.
T Consensus 206 rLPVvnFAAGGvATPADAALMM~LGadGVFVGSGIFK 242 (296)
T COG0214 206 RLPVVNFAAGGVATPADAALMMQLGADGVFVGSGIFK 242 (296)
T ss_pred CCCeEeecccCcCChhHHHHHHHhCCCeEEecccccC
Confidence 5555 6899999999999999999999999997765
|
|
| >cd00956 Transaldolase_FSA Transaldolase-like fructose-6-phosphate aldolases (FSA) found in bacteria and archaea, which are member of the MipB/TalC subfamily of class I aldolases | Back alignment and domain information |
|---|
Probab=97.76 E-value=0.0042 Score=57.02 Aligned_cols=174 Identities=18% Similarity=0.206 Sum_probs=110.5
Q ss_pred hhHHHHHHHHHcCCceeecCCCC------C-CH----HHHHhhCCCceEEEEeecCCHHHHHHHHHHHHHcCCcEEEEec
Q 017718 89 GEYATARAASAAGTIMTLSSWST------S-SV----EEVASTGPGIRFFQLYVYKDRNVVAQLVRRAERAGFKAIALTV 157 (367)
Q Consensus 89 ~e~~~a~aa~~~G~~~~vs~~~~------~-~~----e~i~~~~~~~~~~QLy~~~d~~~~~~~l~ra~~~G~~ai~itv 157 (367)
.|+.-.+.+.+.|..-.++|..+ . .. .++++..+++..+|++ ..|.+.+.+..++..+.+ ..++|-+
T Consensus 7 a~~~ei~~~~~~~~i~GvTTNPsll~k~~~~~~~~~~~~i~~~~~~~v~~qv~-~~~~e~~i~~a~~l~~~~-~~~~iKI 84 (211)
T cd00956 7 ADLEEIKKASETGLLDGVTTNPSLIAKSGRIDFEAVLKEICEIIDGPVSAQVV-STDAEGMVAEARKLASLG-GNVVVKI 84 (211)
T ss_pred CCHHHHHHHHhcCCcCccccCHHHHHhcCCcCHHHHHHHHHHhcCCCEEEEEE-eCCHHHHHHHHHHHHHhC-CCEEEEE
Confidence 46666777777776655655421 1 22 2333444567888987 567666655555555442 2233322
Q ss_pred CCCCCCchhHHhhhhcCCCCccccccccccccCccccccchhhHHHhhhccCccccHHHHHhhcCCCEEEEecCCHHHHH
Q 017718 158 DTPRLGRREADIKNRFTLPPFLTLKNFQGLDLGKMDEANDSGLAAYVAGQIDRSLSWKWLQTITKLPILVKGVLTAEDAR 237 (367)
Q Consensus 158 d~p~~g~r~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~l~~~~~~Pv~vK~v~~~~~a~ 237 (367)
|.. . .+. . ..+.|++. ++++.+-.+.+.+.|.
T Consensus 85 --P~T------------------~----------------~gl-~----------ai~~L~~~-gi~v~~T~V~s~~Qa~ 116 (211)
T cd00956 85 --PVT------------------E----------------DGL-K----------AIKKLSEE-GIKTNVTAIFSAAQAL 116 (211)
T ss_pred --cCc------------------H----------------hHH-H----------HHHHHHHc-CCceeeEEecCHHHHH
Confidence 110 0 000 0 11244433 7899999999999999
Q ss_pred HHHHcCCcEEEEcCCCCCCCCCccchHHHHHHHHHHhcC---CCcEEEecCCCCHHHHHHHHHcCCCEEEechHHHHHhh
Q 017718 238 IAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQG---RIPVFLDGGVRRGTDVFKALALGASGIFIGRPVVYSLA 314 (367)
Q Consensus 238 ~~~~~G~d~i~vs~~gg~~~~~~~~~~~~l~~i~~~~~~---~~~via~GGI~~~~dv~kal~lGAd~V~ig~~~l~~l~ 314 (367)
.+.++|+++|.. +-||--+.+....+.+.++.+.... +..|++ .|+++..++..++.+|||.|-+.-.++..+.
T Consensus 117 ~Aa~AGA~yvsP--~vgR~~~~g~dg~~~i~~i~~~~~~~~~~tkil~-As~r~~~ei~~a~~~Gad~vTv~~~vl~~l~ 193 (211)
T cd00956 117 LAAKAGATYVSP--FVGRIDDLGGDGMELIREIRTIFDNYGFDTKILA-ASIRNPQHVIEAALAGADAITLPPDVLEQLL 193 (211)
T ss_pred HHHHcCCCEEEE--ecChHhhcCCCHHHHHHHHHHHHHHcCCCceEEe-cccCCHHHHHHHHHcCCCEEEeCHHHHHHHh
Confidence 999999998554 4455444555666666666655421 344555 5699999999999999999999998887765
Q ss_pred c
Q 017718 315 A 315 (367)
Q Consensus 315 ~ 315 (367)
.
T Consensus 194 ~ 194 (211)
T cd00956 194 K 194 (211)
T ss_pred c
Confidence 4
|
FSA catalyze an aldol cleavage of fructose 6-phosphate and do not utilize fructose, fructose 1-phosphate, fructose 1,6-phosphate, or dihydroxyacetone phosphate. The enzymes belong to the transaldolase family that serves in transfer reactions in the pentose phosphate cycle, and are more distantly related to fructose 1,6-bisphosphate aldolase. |
| >cd00959 DeoC 2-deoxyribose-5-phosphate aldolase (DERA) of the DeoC family | Back alignment and domain information |
|---|
Probab=97.75 E-value=0.00059 Score=62.21 Aligned_cols=65 Identities=32% Similarity=0.354 Sum_probs=48.4
Q ss_pred HHHHHHcCCcEEEEcCCCCCCCCCccchHHHHHHHHHHhcCCCcEEEecCCCCHHHHHHHHHcCCCEEE
Q 017718 236 ARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIF 304 (367)
Q Consensus 236 a~~~~~~G~d~i~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~~~via~GGI~~~~dv~kal~lGAd~V~ 304 (367)
++.+.++|+|+|-.+ +|-. ....+.+.+..+.+.++.++||-++|||++.+++++.+.+||+-++
T Consensus 137 ~ria~e~GaD~IKTs-TG~~---~~~at~~~v~~~~~~~~~~v~ik~aGGikt~~~~l~~~~~g~~riG 201 (203)
T cd00959 137 CEIAIEAGADFIKTS-TGFG---PGGATVEDVKLMKEAVGGRVGVKAAGGIRTLEDALAMIEAGATRIG 201 (203)
T ss_pred HHHHHHhCCCEEEcC-CCCC---CCCCCHHHHHHHHHHhCCCceEEEeCCCCCHHHHHHHHHhChhhcc
Confidence 678999999999986 2321 2224444444444444458999999999999999999999998764
|
DERA belongs to the class I aldolases and catalyzes a reversible aldol reaction between acetaldehyde and glyceraldehyde 3-phosphate to generate 2-deoxyribose 5-phosphate. DERA is unique in catalyzing the aldol reaction between two aldehydes, and its broad substrate specificity confers considerable utility as a biocatalyst, offering an environmentally benign alternative to chiral transition metal catalysis of the asymmetric aldol reaction. |
| >PRK06806 fructose-bisphosphate aldolase; Provisional | Back alignment and domain information |
|---|
Probab=97.75 E-value=0.012 Score=56.31 Aligned_cols=109 Identities=19% Similarity=0.277 Sum_probs=76.0
Q ss_pred cCCHHHHHHHH-HcCCcEEEEc--C-CCCCCCCCccchHHHHHHHHHHhcCCCcEEEec--CCCCHHHHHHHHHcCCCEE
Q 017718 230 VLTAEDARIAV-QAGAAGIIVS--N-HGARQLDYVPATIMALEEVVKATQGRIPVFLDG--GVRRGTDVFKALALGASGI 303 (367)
Q Consensus 230 v~~~~~a~~~~-~~G~d~i~vs--~-~gg~~~~~~~~~~~~l~~i~~~~~~~~~via~G--GI~~~~dv~kal~lGAd~V 303 (367)
..++++|+.+. +.|+|++-++ + ||-+ ....+-.++.|.++.+.+ ++|+++-| ||. .+++.+++..|++.|
T Consensus 152 ~t~~eea~~f~~~tg~DyLAvaiG~~hg~~-~~~~~l~~~~L~~i~~~~--~iPlV~hG~SGI~-~e~~~~~i~~G~~ki 227 (281)
T PRK06806 152 LTSTTEAKRFAEETDVDALAVAIGNAHGMY-NGDPNLRFDRLQEINDVV--HIPLVLHGGSGIS-PEDFKKCIQHGIRKI 227 (281)
T ss_pred eCCHHHHHHHHHhhCCCEEEEccCCCCCCC-CCCCccCHHHHHHHHHhc--CCCEEEECCCCCC-HHHHHHHHHcCCcEE
Confidence 36789998887 4699999994 3 4532 222234788999999887 79999999 875 588999999999999
Q ss_pred EechHHHHHhhc-------cCh-----HHHHHHHHHHHHHHHHHHHHhCCC
Q 017718 304 FIGRPVVYSLAA-------EGE-----KGVRRVLEMLREEFELAMALSGCR 342 (367)
Q Consensus 304 ~ig~~~l~~l~~-------~G~-----~~v~~~i~~l~~el~~~m~~~G~~ 342 (367)
-+.|.+..+... ..+ .-.....+.+++..+..|+.+|..
T Consensus 228 nv~T~i~~a~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~gs~ 278 (281)
T PRK06806 228 NVATATFNSVITAVNNLVLNTPYSDYFTYHQDVIKAAYENVKKHMQIFGSE 278 (281)
T ss_pred EEhHHHHHHHHHHHHHHHHhCCCCChHHHHHHHHHHHHHHHHHHHHHhCCC
Confidence 999988654210 000 112333455666667777777753
|
|
| >PRK09427 bifunctional indole-3-glycerol phosphate synthase/phosphoribosylanthranilate isomerase; Provisional | Back alignment and domain information |
|---|
Probab=97.74 E-value=0.00076 Score=68.72 Aligned_cols=115 Identities=17% Similarity=0.226 Sum_probs=79.7
Q ss_pred hcCCCEEEEecCCHHHHHHHHHcCCcEEEEcCCCCCCCCCccchHHHHHHHHHHhcCCCcEEEecCCCCHHHHHHHHHcC
Q 017718 220 ITKLPILVKGVLTAEDARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALG 299 (367)
Q Consensus 220 ~~~~Pv~vK~v~~~~~a~~~~~~G~d~i~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~~~via~GGI~~~~dv~kal~lG 299 (367)
..++-.+| .+-+.++++++.++|++.|-+-|..=.++.. ..+.-.++...++.++.+|+.+||.+++|+.++ ..|
T Consensus 157 ~lGl~~lv-Evh~~~El~~al~~~a~iiGiNnRdL~t~~v---d~~~~~~l~~~ip~~~~~vseSGI~t~~d~~~~-~~~ 231 (454)
T PRK09427 157 SLNMGVLT-EVSNEEELERAIALGAKVIGINNRNLRDLSI---DLNRTRELAPLIPADVIVISESGIYTHAQVREL-SPF 231 (454)
T ss_pred HcCCcEEE-EECCHHHHHHHHhCCCCEEEEeCCCCccceE---CHHHHHHHHhhCCCCcEEEEeCCCCCHHHHHHH-Hhc
Confidence 34665555 6788999999999999988887643322322 333344445556667889999999999999886 458
Q ss_pred CCEEEechHHHHHhhccChHHHHHHHHHHHHHHHHHHHHhCCCChhhhc
Q 017718 300 ASGIFIGRPVVYSLAAEGEKGVRRVLEMLREEFELAMALSGCRSLKEIT 348 (367)
Q Consensus 300 Ad~V~ig~~~l~~l~~~G~~~v~~~i~~l~~el~~~m~~~G~~si~~l~ 348 (367)
||+|.||+.+|.+ .. ..+.+..+ +......||.++.+++.
T Consensus 232 ~davLiG~~lm~~---~d---~~~~~~~L---~~~~vKICGit~~eda~ 271 (454)
T PRK09427 232 ANGFLIGSSLMAE---DD---LELAVRKL---ILGENKVCGLTRPQDAK 271 (454)
T ss_pred CCEEEECHHHcCC---CC---HHHHHHHH---hccccccCCCCCHHHHH
Confidence 9999999999863 11 12233333 22345779999988876
|
|
| >TIGR00734 hisAF_rel hisA/hisF family protein | Back alignment and domain information |
|---|
Probab=97.73 E-value=0.00015 Score=67.16 Aligned_cols=70 Identities=19% Similarity=0.266 Sum_probs=53.8
Q ss_pred HHHHHHcCCcEEEEcCCC--CCCCCCccchHHHHHHHHHHhcCCCcEEEecCCCCHHHHHHHHHcCCCEEEechHHHH
Q 017718 236 ARIAVQAGAAGIIVSNHG--ARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFIGRPVVY 311 (367)
Q Consensus 236 a~~~~~~G~d~i~vs~~g--g~~~~~~~~~~~~l~~i~~~~~~~~~via~GGI~~~~dv~kal~lGAd~V~ig~~~l~ 311 (367)
...+.+.|+ ++++..-. |+ ...+.++.+.++.+.+ .+|||++|||++.+|+.++..+||++|.+|+++..
T Consensus 147 ~~~~~~~g~-~ii~tdI~~dGt---~~G~d~eli~~i~~~~--~~pvia~GGi~s~ed~~~l~~~Ga~~vivgsal~~ 218 (221)
T TIGR00734 147 RDFLNSFDY-GLIVLDIHSVGT---MKGPNLELLTKTLELS--EHPVMLGGGISGVEDLELLKEMGVSAVLVATAVHK 218 (221)
T ss_pred HHHHHhcCC-EEEEEECCcccc---CCCCCHHHHHHHHhhC--CCCEEEeCCCCCHHHHHHHHHCCCCEEEEhHHhhC
Confidence 345566787 66654311 21 1235688888888776 79999999999999999988899999999999875
|
This alignment models a family of proteins found so far in three archaeal species: Methanobacterium thermoautotrophicum, Methanococcus jannaschii, and Archaeoglobus fulgidus. This protein is homologous to phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase (HisA) and, with lower similarity, to the cyclase HisF, both of which are enzymes of histidine biosynthesis. Each species with this protein also encodes HisA. The function of this protein is unknown. |
| >PRK07226 fructose-bisphosphate aldolase; Provisional | Back alignment and domain information |
|---|
Probab=97.72 E-value=0.00086 Score=63.74 Aligned_cols=82 Identities=27% Similarity=0.436 Sum_probs=59.8
Q ss_pred hhcCCCEEEEe---------cCCHHH----HHHHHHcCCcEEEEcCCCCCCCCCccchHHHHHHHHHHhcCCCcEEEecC
Q 017718 219 TITKLPILVKG---------VLTAED----ARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGG 285 (367)
Q Consensus 219 ~~~~~Pv~vK~---------v~~~~~----a~~~~~~G~d~i~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~~~via~GG 285 (367)
..+++|+++-. ..+.+. ++.+.+.|+|+|-.+-+| ..+.+.++.+.. ++||+++||
T Consensus 136 ~~~g~pl~vi~~~~g~~~e~~~~~~~i~~a~~~a~e~GAD~vKt~~~~---------~~~~l~~~~~~~--~ipV~a~GG 204 (267)
T PRK07226 136 EEWGMPLLAMMYPRGPGIKNEYDPEVVAHAARVAAELGADIVKTNYTG---------DPESFREVVEGC--PVPVVIAGG 204 (267)
T ss_pred HHcCCcEEEEEecCCCccCCCccHHHHHHHHHHHHHHCCCEEeeCCCC---------CHHHHHHHHHhC--CCCEEEEeC
Confidence 34688887731 122222 678889999999886321 346677766544 799999999
Q ss_pred CC--CHHHHHHHH----HcCCCEEEechHHHH
Q 017718 286 VR--RGTDVFKAL----ALGASGIFIGRPVVY 311 (367)
Q Consensus 286 I~--~~~dv~kal----~lGAd~V~ig~~~l~ 311 (367)
|+ |.+++++.+ .+||+++.+||.++.
T Consensus 205 i~~~~~~~~l~~v~~~~~aGA~Gis~gr~i~~ 236 (267)
T PRK07226 205 PKTDTDREFLEMVRDAMEAGAAGVAVGRNVFQ 236 (267)
T ss_pred CCCCCHHHHHHHHHHHHHcCCcEEehhhhhhc
Confidence 99 777777765 899999999998875
|
|
| >COG0159 TrpA Tryptophan synthase alpha chain [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=97.69 E-value=0.0045 Score=58.43 Aligned_cols=81 Identities=19% Similarity=0.226 Sum_probs=53.6
Q ss_pred CCHHHHHHHHHcCCcEEEE-cCCCCCC--CCCccchHHHHHHHHHHhcCCCcEEEecCCCCHHHHHHHHHcCCCEEEech
Q 017718 231 LTAEDARIAVQAGAAGIIV-SNHGARQ--LDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFIGR 307 (367)
Q Consensus 231 ~~~~~a~~~~~~G~d~i~v-s~~gg~~--~~~~~~~~~~l~~i~~~~~~~~~via~GGI~~~~dv~kal~lGAd~V~ig~ 307 (367)
.+.+-.++..+..=-+|.+ |-.|=|. ........+.+..+++.. ++||..-=||++++++.+.... ||+|.+||
T Consensus 158 t~~~rl~~i~~~a~GFiY~vs~~GvTG~~~~~~~~~~~~v~~vr~~~--~~Pv~vGFGIs~~e~~~~v~~~-ADGVIVGS 234 (265)
T COG0159 158 TPDERLKKIAEAASGFIYYVSRMGVTGARNPVSADVKELVKRVRKYT--DVPVLVGFGISSPEQAAQVAEA-ADGVIVGS 234 (265)
T ss_pred CCHHHHHHHHHhCCCcEEEEecccccCCCcccchhHHHHHHHHHHhc--CCCeEEecCcCCHHHHHHHHHh-CCeEEEcH
Confidence 3445555555554334443 3222221 111112456677776665 8999987799999999999999 99999999
Q ss_pred HHHHHhh
Q 017718 308 PVVYSLA 314 (367)
Q Consensus 308 ~~l~~l~ 314 (367)
+++.-+.
T Consensus 235 AiV~~i~ 241 (265)
T COG0159 235 AIVKIIE 241 (265)
T ss_pred HHHHHHH
Confidence 9987654
|
|
| >PRK04180 pyridoxal biosynthesis lyase PdxS; Provisional | Back alignment and domain information |
|---|
Probab=97.68 E-value=0.00081 Score=63.92 Aligned_cols=119 Identities=19% Similarity=0.115 Sum_probs=81.7
Q ss_pred HHHHHHHHHcCCcEEEEecCCCCCCchhHHhhhhcCCCCccccccccccccCccccccchhhHHHhhhccCccccHHHHH
Q 017718 139 AQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLTLKNFQGLDLGKMDEANDSGLAAYVAGQIDRSLSWKWLQ 218 (367)
Q Consensus 139 ~~~l~ra~~~G~~ai~itvd~p~~g~r~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~l~ 218 (367)
.+..+.|+++|++.+.+++.||.. .+..- +.. .+. +| -+...++
T Consensus 27 ~~~a~iae~~g~~~v~~~~~~psd------~~~~g----g~~-----------------------Rm~--~p-~~I~aIk 70 (293)
T PRK04180 27 AEQAKIAEEAGAVAVMALERVPAD------IRAAG----GVA-----------------------RMA--DP-KMIEEIM 70 (293)
T ss_pred HHHHHHHHHhChHHHHHccCCCch------HhhcC----Cee-----------------------ecC--CH-HHHHHHH
Confidence 345788999999999999999973 22110 000 010 11 1345888
Q ss_pred hhcCCCEEEEecC-CHHHHHHHHHcCCcEEEEcCCCCCCCCCccchHHHHHHHHHHhcCCCcEEEecCCCCHHHHHHHHH
Q 017718 219 TITKLPILVKGVL-TAEDARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALA 297 (367)
Q Consensus 219 ~~~~~Pv~vK~v~-~~~~a~~~~~~G~d~i~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~~~via~GGI~~~~dv~kal~ 297 (367)
+.+++||+.|... ...+|+.+.++|+|.|.-|..- .|..+.+..++... ++|+ ..|++|-++++.++.
T Consensus 71 ~~V~iPVigk~Righ~~Ea~~L~~~GvDiID~Te~l-------rpad~~~~~~K~~f--~~~f--mad~~~l~EAlrai~ 139 (293)
T PRK04180 71 DAVSIPVMAKARIGHFVEAQILEALGVDYIDESEVL-------TPADEEYHIDKWDF--TVPF--VCGARNLGEALRRIA 139 (293)
T ss_pred HhCCCCeEEeehhhHHHHHHHHHHcCCCEEeccCCC-------CchHHHHHHHHHHc--CCCE--EccCCCHHHHHHHHH
Confidence 8899999999874 4789999999999999643211 12334455554433 4554 457999999999999
Q ss_pred cCCCEEE
Q 017718 298 LGASGIF 304 (367)
Q Consensus 298 lGAd~V~ 304 (367)
+|||.|.
T Consensus 140 ~GadmI~ 146 (293)
T PRK04180 140 EGAAMIR 146 (293)
T ss_pred CCCCeee
Confidence 9999874
|
|
| >TIGR00693 thiE thiamine-phosphate pyrophosphorylase | Back alignment and domain information |
|---|
Probab=97.68 E-value=0.00072 Score=60.86 Aligned_cols=82 Identities=22% Similarity=0.231 Sum_probs=61.3
Q ss_pred EecCCHHHHHHHHHcCCcEEEEcCCCCCCCC-C--ccchHHHHHHHHHHhcCCCcEEEecCCCCHHHHHHHHHcCCCEEE
Q 017718 228 KGVLTAEDARIAVQAGAAGIIVSNHGARQLD-Y--VPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIF 304 (367)
Q Consensus 228 K~v~~~~~a~~~~~~G~d~i~vs~~gg~~~~-~--~~~~~~~l~~i~~~~~~~~~via~GGI~~~~dv~kal~lGAd~V~ 304 (367)
-.+.+.+++..+.+.|+|+|.++.-.-+... . .+..++.+.++.+... ++||++.||| +.+++.+++.+||++|.
T Consensus 101 ~s~h~~~e~~~a~~~g~dyi~~~~v~~t~~k~~~~~~~g~~~l~~~~~~~~-~~pv~a~GGI-~~~~~~~~~~~G~~gva 178 (196)
T TIGR00693 101 VSTHNLEELAEAEAEGADYIGFGPIFPTPTKKDPAPPAGVELLREIAATSI-DIPIVAIGGI-TLENAAEVLAAGADGVA 178 (196)
T ss_pred EeCCCHHHHHHHhHcCCCEEEECCccCCCCCCCCCCCCCHHHHHHHHHhcC-CCCEEEECCc-CHHHHHHHHHcCCCEEE
Confidence 3457788888899999999998653222111 1 1224677777766542 5999999999 58999999999999999
Q ss_pred echHHHH
Q 017718 305 IGRPVVY 311 (367)
Q Consensus 305 ig~~~l~ 311 (367)
+|+.++-
T Consensus 179 ~~~~i~~ 185 (196)
T TIGR00693 179 VVSAIMQ 185 (196)
T ss_pred EhHHhhC
Confidence 9998763
|
This model includes ThiE from Bacillus subtilis but excludes its paralog, the regulatory protein TenI, and neighbors of TenI. |
| >cd01572 QPRTase Quinolinate phosphoribosyl transferase (QAPRTase or QPRTase), also called nicotinate-nucleotide pyrophosphorylase, is involved in the de novo synthesis of NAD in both prokaryotes and eukaryotes | Back alignment and domain information |
|---|
Probab=97.67 E-value=0.0015 Score=62.20 Aligned_cols=87 Identities=22% Similarity=0.214 Sum_probs=66.9
Q ss_pred cHHHHHhhcC-CCEEEEecCCHHHHHHHHHcCCcEEEEcCCCCCCCCCccchHHHHHHHHHHhcCCCcEEEecCCCCHHH
Q 017718 213 SWKWLQTITK-LPILVKGVLTAEDARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTD 291 (367)
Q Consensus 213 ~~~~l~~~~~-~Pv~vK~v~~~~~a~~~~~~G~d~i~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~~~via~GGI~~~~d 291 (367)
.++.+|+..+ ...+.-.+.+.++++.+.++|+|+|-+.+- ..+.+.++.+..+.++|+.++||| +.+.
T Consensus 171 ~v~~~r~~~~~~~~Igvev~s~eea~~A~~~gaDyI~ld~~----------~~e~l~~~~~~~~~~ipi~AiGGI-~~~n 239 (268)
T cd01572 171 AVRRARAAAPFTLKIEVEVETLEQLKEALEAGADIIMLDNM----------SPEELREAVALLKGRVLLEASGGI-TLEN 239 (268)
T ss_pred HHHHHHHhCCCCCeEEEEECCHHHHHHHHHcCCCEEEECCc----------CHHHHHHHHHHcCCCCcEEEECCC-CHHH
Confidence 3456777654 223333457899999999999999999652 246677777665446999999999 6899
Q ss_pred HHHHHHcCCCEEEechHHH
Q 017718 292 VFKALALGASGIFIGRPVV 310 (367)
Q Consensus 292 v~kal~lGAd~V~ig~~~l 310 (367)
+.++...|+|++.+|++..
T Consensus 240 i~~~a~~Gvd~Iav~sl~~ 258 (268)
T cd01572 240 IRAYAETGVDYISVGALTH 258 (268)
T ss_pred HHHHHHcCCCEEEEEeeec
Confidence 9999999999999998654
|
It catalyses the reaction of quinolinic acid (QA) with 5-phosphoribosyl-1-pyrophosphate (PRPP) in the presence of Mg2+ to produce nicotinic acid mononucleotide (NAMN), pyrophosphate and carbon dioxide. QPRTase functions as a homodimer with two active sites, each formed by the C-terminal region of one subunit and the N-terminal region of the other. |
| >PRK14024 phosphoribosyl isomerase A; Provisional | Back alignment and domain information |
|---|
Probab=97.67 E-value=0.00039 Score=65.12 Aligned_cols=75 Identities=27% Similarity=0.231 Sum_probs=61.3
Q ss_pred HHHHHHHHHcCCcEEEEcCCCCCCCCCccchHHHHHHHHHHhcCCCcEEEecCCCCHHHHHHHHHcCCCEEEechHHHH
Q 017718 233 AEDARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFIGRPVVY 311 (367)
Q Consensus 233 ~~~a~~~~~~G~d~i~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~~~via~GGI~~~~dv~kal~lGAd~V~ig~~~l~ 311 (367)
.+.|+...+.|+|.|.+-.--+. .+.....+.+.++.+.+ .+||.+.|||+|.+|+.+++.+||+.|.+|+..+.
T Consensus 35 ~~~a~~~~~~g~~~l~ivDLd~~--~g~~~n~~~i~~i~~~~--~~pv~vgGGirs~edv~~~l~~Ga~kvviGs~~l~ 109 (241)
T PRK14024 35 LDAALAWQRDGAEWIHLVDLDAA--FGRGSNRELLAEVVGKL--DVKVELSGGIRDDESLEAALATGCARVNIGTAALE 109 (241)
T ss_pred HHHHHHHHHCCCCEEEEEecccc--CCCCccHHHHHHHHHHc--CCCEEEcCCCCCHHHHHHHHHCCCCEEEECchHhC
Confidence 36688889999999887542121 13445678999998877 79999999999999999999999999999997764
|
|
| >PRK07428 nicotinate-nucleotide pyrophosphorylase; Provisional | Back alignment and domain information |
|---|
Probab=97.66 E-value=0.003 Score=60.61 Aligned_cols=83 Identities=18% Similarity=0.186 Sum_probs=61.7
Q ss_pred HHHhhcC--CCEEEEecCCHHHHHHHHHcCCcEEEEcCCCCCCCCCccchHHHHHHHHHHh---cCCCcEEEecCCCCHH
Q 017718 216 WLQTITK--LPILVKGVLTAEDARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKAT---QGRIPVFLDGGVRRGT 290 (367)
Q Consensus 216 ~l~~~~~--~Pv~vK~v~~~~~a~~~~~~G~d~i~vs~~gg~~~~~~~~~~~~l~~i~~~~---~~~~~via~GGI~~~~ 290 (367)
.+|+..+ .+| --.+.+.+++..+.++|+|+|-+.|- ++ +.+.++.+.+ ..++++.++||| +.+
T Consensus 188 ~~r~~~~~~~~I-~VEv~tleea~eA~~~GaD~I~LDn~-------~~---e~l~~av~~~~~~~~~i~leAsGGI-t~~ 255 (288)
T PRK07428 188 RIRQRIPYPLTI-EVETETLEQVQEALEYGADIIMLDNM-------PV---DLMQQAVQLIRQQNPRVKIEASGNI-TLE 255 (288)
T ss_pred HHHHhCCCCCEE-EEECCCHHHHHHHHHcCCCEEEECCC-------CH---HHHHHHHHHHHhcCCCeEEEEECCC-CHH
Confidence 5666554 223 22457899999999999999999752 22 3334433332 357999999999 699
Q ss_pred HHHHHHHcCCCEEEechHHH
Q 017718 291 DVFKALALGASGIFIGRPVV 310 (367)
Q Consensus 291 dv~kal~lGAd~V~ig~~~l 310 (367)
.+.++.++|+|.+.+|+++.
T Consensus 256 ni~~ya~tGvD~Isvgsl~~ 275 (288)
T PRK07428 256 TIRAVAETGVDYISSSAPIT 275 (288)
T ss_pred HHHHHHHcCCCEEEEchhhh
Confidence 99999999999999999765
|
|
| >PRK13587 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Provisional | Back alignment and domain information |
|---|
Probab=97.65 E-value=0.00033 Score=65.38 Aligned_cols=74 Identities=24% Similarity=0.345 Sum_probs=58.9
Q ss_pred HHHHHHHHHcCCcEEEEcCC--CCCCCCCccchHHHHHHHHHHhcCCCcEEEecCCCCHHHHHHHHHcCCCEEEechHHH
Q 017718 233 AEDARIAVQAGAAGIIVSNH--GARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFIGRPVV 310 (367)
Q Consensus 233 ~~~a~~~~~~G~d~i~vs~~--gg~~~~~~~~~~~~l~~i~~~~~~~~~via~GGI~~~~dv~kal~lGAd~V~ig~~~l 310 (367)
.+-++.+.+.|+..+++..- -|+ ..-+.++.+.++.+.. ++||++.|||++.+|+.+++.+|+++|.+|+++.
T Consensus 151 ~~~~~~~~~~g~~~ii~tdi~~dGt---~~G~~~~li~~l~~~~--~ipvi~~GGi~s~edi~~l~~~G~~~vivG~a~~ 225 (234)
T PRK13587 151 FSFVRQLSDIPLGGIIYTDIAKDGK---MSGPNFELTGQLVKAT--TIPVIASGGIRHQQDIQRLASLNVHAAIIGKAAH 225 (234)
T ss_pred HHHHHHHHHcCCCEEEEecccCcCC---CCccCHHHHHHHHHhC--CCCEEEeCCCCCHHHHHHHHHcCCCEEEEhHHHH
Confidence 35577888999998887542 121 1225677888887765 7999999999999999999999999999999886
Q ss_pred H
Q 017718 311 Y 311 (367)
Q Consensus 311 ~ 311 (367)
-
T Consensus 226 ~ 226 (234)
T PRK13587 226 Q 226 (234)
T ss_pred h
Confidence 4
|
|
| >PRK06512 thiamine-phosphate pyrophosphorylase; Provisional | Back alignment and domain information |
|---|
Probab=97.65 E-value=0.0012 Score=61.20 Aligned_cols=95 Identities=14% Similarity=0.069 Sum_probs=66.5
Q ss_pred HHHHHhhcCCCEEEEe--cCCHHHHHHHHHcCCcEEEEcCCCCCCC-CCccchHHHHHHHHHHhcCCCcEEEecCCCCHH
Q 017718 214 WKWLQTITKLPILVKG--VLTAEDARIAVQAGAAGIIVSNHGARQL-DYVPATIMALEEVVKATQGRIPVFLDGGVRRGT 290 (367)
Q Consensus 214 ~~~l~~~~~~Pv~vK~--v~~~~~a~~~~~~G~d~i~vs~~gg~~~-~~~~~~~~~l~~i~~~~~~~~~via~GGI~~~~ 290 (367)
...+|+..+--.++.. ..+.+++..+.+.|+|+|.++.---+.. +..+...+.+.++.+.+ ++||++-||| +.+
T Consensus 100 ~~~~r~~~~~~~iiG~s~~~s~~~a~~A~~~gaDYv~~Gpv~t~tK~~~~p~gl~~l~~~~~~~--~iPvvAIGGI-~~~ 176 (221)
T PRK06512 100 LAEAIEKHAPKMIVGFGNLRDRHGAMEIGELRPDYLFFGKLGADNKPEAHPRNLSLAEWWAEMI--EIPCIVQAGS-DLA 176 (221)
T ss_pred HHHHHHhcCCCCEEEecCCCCHHHHHHhhhcCCCEEEECCCCCCCCCCCCCCChHHHHHHHHhC--CCCEEEEeCC-CHH
Confidence 3455544432234433 2467888888899999999964211111 12233456777776655 7999999999 899
Q ss_pred HHHHHHHcCCCEEEechHHHH
Q 017718 291 DVFKALALGASGIFIGRPVVY 311 (367)
Q Consensus 291 dv~kal~lGAd~V~ig~~~l~ 311 (367)
++.+++..||++|.+-+.++.
T Consensus 177 n~~~~~~~GA~giAvisai~~ 197 (221)
T PRK06512 177 SAVEVAETGAEFVALERAVFD 197 (221)
T ss_pred HHHHHHHhCCCEEEEhHHhhC
Confidence 999999999999999998874
|
|
| >PRK01362 putative translaldolase; Provisional | Back alignment and domain information |
|---|
Probab=97.65 E-value=0.0087 Score=55.08 Aligned_cols=92 Identities=21% Similarity=0.160 Sum_probs=71.4
Q ss_pred cCCCEEEEecCCHHHHHHHHHcCCcEEEEcCCCCCCCCCccchHHHHHHHHHHhc---CCCcEEEecCCCCHHHHHHHHH
Q 017718 221 TKLPILVKGVLTAEDARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQ---GRIPVFLDGGVRRGTDVFKALA 297 (367)
Q Consensus 221 ~~~Pv~vK~v~~~~~a~~~~~~G~d~i~vs~~gg~~~~~~~~~~~~l~~i~~~~~---~~~~via~GGI~~~~dv~kal~ 297 (367)
-++++.+-.+.+...|..+.++|+++|.. .=||--+.+......+.++.+.+. .+..|++ ..+++..++.++..
T Consensus 100 ~Gi~v~~T~vfs~~Qa~~Aa~aGa~yisp--yvgRi~d~g~dg~~~i~~~~~~~~~~~~~tkila-AS~r~~~~v~~~~~ 176 (214)
T PRK01362 100 EGIKTNVTLIFSANQALLAAKAGATYVSP--FVGRLDDIGTDGMELIEDIREIYDNYGFDTEIIA-ASVRHPMHVLEAAL 176 (214)
T ss_pred CCCceEEeeecCHHHHHHHHhcCCcEEEe--ecchHhhcCCCHHHHHHHHHHHHHHcCCCcEEEE-eecCCHHHHHHHHH
Confidence 38899999999999999999999998876 334444455566666666665542 2455555 55999999999999
Q ss_pred cCCCEEEechHHHHHhhc
Q 017718 298 LGASGIFIGRPVVYSLAA 315 (367)
Q Consensus 298 lGAd~V~ig~~~l~~l~~ 315 (367)
+|||.+-+.-.++..+..
T Consensus 177 ~G~d~iTi~~~vl~~l~~ 194 (214)
T PRK01362 177 AGADIATIPYKVIKQLFK 194 (214)
T ss_pred cCCCEEecCHHHHHHHHc
Confidence 999999999888877653
|
|
| >cd04726 KGPDC_HPS 3-Keto-L-gulonate 6-phosphate decarboxylase (KGPDC) and D-arabino-3-hexulose-6-phosphate synthase (HPS) | Back alignment and domain information |
|---|
Probab=97.64 E-value=0.00053 Score=61.92 Aligned_cols=90 Identities=20% Similarity=0.174 Sum_probs=65.7
Q ss_pred HHHhhcCCCEEE--EecCCHHHHHHHHHcCCcEEEEcCCCCC-CCCCccchHHHHHHHHHHhcCCCcEEEecCCCCHHHH
Q 017718 216 WLQTITKLPILV--KGVLTAEDARIAVQAGAAGIIVSNHGAR-QLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDV 292 (367)
Q Consensus 216 ~l~~~~~~Pv~v--K~v~~~~~a~~~~~~G~d~i~vs~~gg~-~~~~~~~~~~~l~~i~~~~~~~~~via~GGI~~~~dv 292 (367)
.+++ .++++++ =...+++++..+.+.|+|.+.+.- +.. +..+.+...+.++++.+.. ++|++++|||+ .+++
T Consensus 98 ~~~~-~g~~~~v~~~~~~t~~e~~~~~~~~~d~v~~~~-~~~~~~~~~~~~~~~i~~~~~~~--~~~i~~~GGI~-~~~i 172 (202)
T cd04726 98 AAKK-YGKEVQVDLIGVEDPEKRAKLLKLGVDIVILHR-GIDAQAAGGWWPEDDLKKVKKLL--GVKVAVAGGIT-PDTL 172 (202)
T ss_pred HHHH-cCCeEEEEEeCCCCHHHHHHHHHCCCCEEEEcC-cccccccCCCCCHHHHHHHHhhc--CCCEEEECCcC-HHHH
Confidence 4443 5777775 355788888888999999988831 111 1111344567777776543 79999999995 9999
Q ss_pred HHHHHcCCCEEEechHHH
Q 017718 293 FKALALGASGIFIGRPVV 310 (367)
Q Consensus 293 ~kal~lGAd~V~ig~~~l 310 (367)
.+++..|||+|.+||+++
T Consensus 173 ~~~~~~Gad~vvvGsai~ 190 (202)
T cd04726 173 PEFKKAGADIVIVGRAIT 190 (202)
T ss_pred HHHHhcCCCEEEEeehhc
Confidence 999999999999999874
|
KGPDC catalyzes the formation of L-xylulose 5-phosphate and carbon dioxide from 3-keto-L-gulonate 6-phosphate as part of the anaerobic pathway for L-ascorbate utilization in some eubacteria. HPS catalyzes the formation of D-arabino-3-hexulose-6-phosphate from D-ribulose 5-phosphate and formaldehyde in microorganisms that can use formaldehyde as a carbon source. Both catalyze reactions that involve the Mg2+-assisted formation and stabilization of 1,2-enediolate reaction intermediates. |
| >PLN02460 indole-3-glycerol-phosphate synthase | Back alignment and domain information |
|---|
Probab=97.63 E-value=0.0018 Score=63.20 Aligned_cols=168 Identities=14% Similarity=0.164 Sum_probs=96.1
Q ss_pred HHHHHHHHcCCcEEEEecCCCCCCchhHHhhh---h-cCCCCccccccccccccCccccc--cchhhHHHhhhccCc-cc
Q 017718 140 QLVRRAERAGFKAIALTVDTPRLGRREADIKN---R-FTLPPFLTLKNFQGLDLGKMDEA--NDSGLAAYVAGQIDR-SL 212 (367)
Q Consensus 140 ~~l~ra~~~G~~ai~itvd~p~~g~r~~~~~~---~-~~~p~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~d~-~~ 212 (367)
++++.-++.|+.+|-|-.|....+-...+++. . ..+|- -.+.+- +....+.+. .++..--.+....++ .+
T Consensus 143 ~iA~~Ye~~GA~aISVLTd~~~F~Gs~e~L~~vr~~~v~lPv--LrKDFI-ID~yQI~eAr~~GADAVLLIaaiL~~~~L 219 (338)
T PLN02460 143 EIAQAYEKGGAACLSVLTDEKYFQGSFENLEAIRNAGVKCPL--LCKEFI-VDAWQIYYARSKGADAILLIAAVLPDLDI 219 (338)
T ss_pred HHHHHHHhCCCcEEEEecCcCcCCCCHHHHHHHHHcCCCCCE--eecccc-CCHHHHHHHHHcCCCcHHHHHHhCCHHHH
Confidence 45666678899999999998887666655543 2 33331 111110 000000000 011000011111111 11
Q ss_pred -cHHHHHhhcCCCEEEEecCCHHHHHHHHHc-CCcEEEEcCCCCCCCCCccchHHHHHHHH--HHh-cCCCcEEEecCCC
Q 017718 213 -SWKWLQTITKLPILVKGVLTAEDARIAVQA-GAAGIIVSNHGARQLDYVPATIMALEEVV--KAT-QGRIPVFLDGGVR 287 (367)
Q Consensus 213 -~~~~l~~~~~~Pv~vK~v~~~~~a~~~~~~-G~d~i~vs~~gg~~~~~~~~~~~~l~~i~--~~~-~~~~~via~GGI~ 287 (367)
.+-.+.+..++-++| .+-+.++++++.++ |++.|-|-|..=.++.....+..-|.... +.+ +.++.+++.+||.
T Consensus 220 ~~l~~~A~~LGme~LV-EVH~~~ElerAl~~~ga~iIGINNRdL~Tf~vDl~~t~~L~~~~~~~~i~~~~~~~VsESGI~ 298 (338)
T PLN02460 220 KYMLKICKSLGMAALI-EVHDEREMDRVLGIEGVELIGINNRSLETFEVDISNTKKLLEGERGEQIREKGIIVVGESGLF 298 (338)
T ss_pred HHHHHHHHHcCCeEEE-EeCCHHHHHHHHhcCCCCEEEEeCCCCCcceECHHHHHHHhhhccccccCCCCeEEEECCCCC
Confidence 111333445766655 67889999999998 99988887743333333333322222200 022 2356789999999
Q ss_pred CHHHHHHHHHcCCCEEEechHHHH
Q 017718 288 RGTDVFKALALGASGIFIGRPVVY 311 (367)
Q Consensus 288 ~~~dv~kal~lGAd~V~ig~~~l~ 311 (367)
+++|+..+..+|||+|.||..++.
T Consensus 299 t~~Dv~~l~~~GadAvLVGEsLMr 322 (338)
T PLN02460 299 TPDDVAYVQNAGVKAVLVGESLVK 322 (338)
T ss_pred CHHHHHHHHHCCCCEEEECHHHhC
Confidence 999999999999999999999986
|
|
| >TIGR01163 rpe ribulose-phosphate 3-epimerase | Back alignment and domain information |
|---|
Probab=97.61 E-value=0.0041 Score=56.34 Aligned_cols=76 Identities=20% Similarity=0.269 Sum_probs=50.8
Q ss_pred HHHHHHHHcCCcEEEEcCC--CCCCCCCccchHHHHHHHHHHhcC---CCcEEEecCCCCHHHHHHHHHcCCCEEEechH
Q 017718 234 EDARIAVQAGAAGIIVSNH--GARQLDYVPATIMALEEVVKATQG---RIPVFLDGGVRRGTDVFKALALGASGIFIGRP 308 (367)
Q Consensus 234 ~~a~~~~~~G~d~i~vs~~--gg~~~~~~~~~~~~l~~i~~~~~~---~~~via~GGI~~~~dv~kal~lGAd~V~ig~~ 308 (367)
.+.......++|++.+... |++.....+...+.+.++++..+. .+|++++|||+ .+++.+++..|||.+.+||+
T Consensus 117 ~e~~~~~~~~~d~i~~~~~~~g~tg~~~~~~~~~~i~~i~~~~~~~~~~~~i~v~GGI~-~env~~l~~~gad~iivgsa 195 (210)
T TIGR01163 117 LEFLEYVLPDVDLVLLMSVNPGFGGQKFIPDTLEKIREVRKMIDENGLSILIEVDGGVN-DDNARELAEAGADILVAGSA 195 (210)
T ss_pred HHHHHHHHhhCCEEEEEEEcCCCCcccccHHHHHHHHHHHHHHHhcCCCceEEEECCcC-HHHHHHHHHcCCCEEEEChH
Confidence 3333344557899776431 222222234455666666655431 37899999996 79999999999999999998
Q ss_pred HH
Q 017718 309 VV 310 (367)
Q Consensus 309 ~l 310 (367)
++
T Consensus 196 i~ 197 (210)
T TIGR01163 196 IF 197 (210)
T ss_pred Hh
Confidence 86
|
This family consists of Ribulose-phosphate 3-epimerase, also known as pentose-5-phosphate 3-epimerase (PPE). PPE converts D-ribulose 5-phosphate into D-xylulose 5-phosphate in Calvin's reductive pentose phosphate cycle. It has been found in a wide range of bacteria, archebacteria, fungi and plants. |
| >PRK08883 ribulose-phosphate 3-epimerase; Provisional | Back alignment and domain information |
|---|
Probab=97.61 E-value=0.0033 Score=58.09 Aligned_cols=48 Identities=25% Similarity=0.344 Sum_probs=38.3
Q ss_pred chHHHHHHHHHHhcC---CCcEEEecCCCCHHHHHHHHHcCCCEEEechHHH
Q 017718 262 ATIMALEEVVKATQG---RIPVFLDGGVRRGTDVFKALALGASGIFIGRPVV 310 (367)
Q Consensus 262 ~~~~~l~~i~~~~~~---~~~via~GGI~~~~dv~kal~lGAd~V~ig~~~l 310 (367)
...+.+.++++.... .+||.++|||. .+.+.+....|||.+.+||.++
T Consensus 149 ~~lekI~~l~~~~~~~~~~~~I~vdGGI~-~eni~~l~~aGAd~vVvGSaIf 199 (220)
T PRK08883 149 HTLDKLRAVRKMIDESGRDIRLEIDGGVK-VDNIREIAEAGADMFVAGSAIF 199 (220)
T ss_pred hHHHHHHHHHHHHHhcCCCeeEEEECCCC-HHHHHHHHHcCCCEEEEeHHHh
Confidence 355666666665432 48999999999 8899999999999999999854
|
|
| >PRK12656 fructose-6-phosphate aldolase; Reviewed | Back alignment and domain information |
|---|
Probab=97.60 E-value=0.012 Score=54.40 Aligned_cols=187 Identities=18% Similarity=0.142 Sum_probs=114.2
Q ss_pred hhHHHHHHHHHcCCceeecCCCC-------CCHH----HHHhhCC--CceEEEEeecCCHHHHHHHHHHHH-HcCCcEEE
Q 017718 89 GEYATARAASAAGTIMTLSSWST-------SSVE----EVASTGP--GIRFFQLYVYKDRNVVAQLVRRAE-RAGFKAIA 154 (367)
Q Consensus 89 ~e~~~a~aa~~~G~~~~vs~~~~-------~~~e----~i~~~~~--~~~~~QLy~~~d~~~~~~~l~ra~-~~G~~ai~ 154 (367)
.|+.-.+.+.+.|..-.++|..+ ...+ ++++..+ .+..+|++ ..|.+.+.+..++.. ..| +.++
T Consensus 8 Ad~~~i~~~~~~~~i~GvTTNPsll~k~g~~~~~~~~~~i~~~i~~~~~vs~ev~-~~~~~~mi~eA~~l~~~~~-~nv~ 85 (222)
T PRK12656 8 LNLEAIKKWHEILPLAGVTSNPSIAKKEGDIDFFERIREVREIIGDEASIHVQVV-AQDYEGILKDAHEIRRQCG-DDVY 85 (222)
T ss_pred CCHHHHHHHHhcCCcceEeCCHHHHHhcCCCCHHHHHHHHHHHhCCCCcEEEEEE-ECCHHHHHHHHHHHHHHhC-CCEE
Confidence 46777777888887777776522 1222 3444433 47889997 566665544444443 234 3233
Q ss_pred EecCCCCCCchhHHhhhhcCCCCccccccccccccCccccccchhhHHHhhhccCccccHHHHHhhcCCCEEEEecCCHH
Q 017718 155 LTVDTPRLGRREADIKNRFTLPPFLTLKNFQGLDLGKMDEANDSGLAAYVAGQIDRSLSWKWLQTITKLPILVKGVLTAE 234 (367)
Q Consensus 155 itvd~p~~g~r~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~l~~~~~~Pv~vK~v~~~~ 234 (367)
|-+ |.. .. ++ . ..+.|++ -++++.+-.+.+.+
T Consensus 86 VKI--P~T------------------~~----------------Gl-~----------Ai~~L~~-~Gi~vn~T~ifs~~ 117 (222)
T PRK12656 86 IKV--PVT------------------PA----------------GL-A----------AIKTLKA-EGYHITATAIYTVF 117 (222)
T ss_pred EEe--CCC------------------HH----------------HH-H----------HHHHHHH-CCCceEEeeeCCHH
Confidence 322 110 00 00 0 1113332 38999999999999
Q ss_pred HHHHHHHcCCcEEEEcCCCCCCCCCccchHHHHHHHHHHh---cCCCcEEEecCCCCHHHHHHHHHcCCCEEEechHHHH
Q 017718 235 DARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKAT---QGRIPVFLDGGVRRGTDVFKALALGASGIFIGRPVVY 311 (367)
Q Consensus 235 ~a~~~~~~G~d~i~vs~~gg~~~~~~~~~~~~l~~i~~~~---~~~~~via~GGI~~~~dv~kal~lGAd~V~ig~~~l~ 311 (367)
.|..+.++|+++|.. .=||--+.|......+.++.+.+ +.+..|++.+ +++..++.+++.+|||.+-+.-.++.
T Consensus 118 Qa~~Aa~aGa~yvsP--yvgRi~d~g~D~~~~i~~i~~~~~~~~~~tkILaAS-~r~~~~v~~a~~~G~d~vTvp~~vl~ 194 (222)
T PRK12656 118 QGLLAIEAGADYLAP--YYNRMENLNIDSNAVIGQLAEAIDRENSDSKILAAS-FKNVAQVNKAFALGAQAVTAGPDVFE 194 (222)
T ss_pred HHHHHHHCCCCEEec--ccchhhhcCCCHHHHHHHHHHHHHhcCCCCEEEEEe-cCCHHHHHHHHHcCCCEEecCHHHHH
Confidence 999999999998765 33443333333445555554443 3356777765 99999999999999999999988887
Q ss_pred HhhccC--hHHHHHHHHHH
Q 017718 312 SLAAEG--EKGVRRVLEML 328 (367)
Q Consensus 312 ~l~~~G--~~~v~~~i~~l 328 (367)
.+..+. ..+++.+.+.|
T Consensus 195 ~l~~~p~t~~~~~~F~~dw 213 (222)
T PRK12656 195 AAFAMPSIQKAVDDFADDW 213 (222)
T ss_pred HHhcCCcHHHHHHHHHHHH
Confidence 664322 23444444443
|
|
| >PF00977 His_biosynth: Histidine biosynthesis protein; InterPro: IPR006062 Histidine is formed by several complex and distinct biochemical reactions catalysed by eight enzymes | Back alignment and domain information |
|---|
Probab=97.59 E-value=0.00034 Score=65.03 Aligned_cols=76 Identities=25% Similarity=0.335 Sum_probs=56.4
Q ss_pred HHHHHHHHHcCCcEEEEcCCCCCCCCCccchHHHHHHHHHHhcCCCcEEEecCCCCHHHHHHHHHcCCCEEEechHHHH
Q 017718 233 AEDARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFIGRPVVY 311 (367)
Q Consensus 233 ~~~a~~~~~~G~d~i~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~~~via~GGI~~~~dv~kal~lGAd~V~ig~~~l~ 311 (367)
.+.++.+.+.|+..|++..-..-....| +.++.+.++++.+ ++|||++|||++.+|+.++...|+++|.+|++|..
T Consensus 150 ~~~~~~~~~~g~~~ii~tdi~~dGt~~G-~d~~~~~~l~~~~--~~~viasGGv~~~~Dl~~l~~~G~~gvivg~al~~ 225 (229)
T PF00977_consen 150 EEFAKRLEELGAGEIILTDIDRDGTMQG-PDLELLKQLAEAV--NIPVIASGGVRSLEDLRELKKAGIDGVIVGSALHE 225 (229)
T ss_dssp HHHHHHHHHTT-SEEEEEETTTTTTSSS---HHHHHHHHHHH--SSEEEEESS--SHHHHHHHHHTTECEEEESHHHHT
T ss_pred HHHHHHHHhcCCcEEEEeeccccCCcCC-CCHHHHHHHHHHc--CCCEEEecCCCCHHHHHHHHHCCCcEEEEehHhhC
Confidence 3557889999999998864211001122 4668888888877 89999999999999999999999999999999864
|
Proteins involved in steps 4 and 6 of the histidine biosynthesis pathway are contained in one family. These enzymes are called His6 and His7 in eukaryotes and HisA and HisF in prokaryotes. HisA is a phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase (5.3.1.16 from EC), involved in the fourth step of histidine biosynthesis. The bacterial HisF protein is a cyclase which catalyzes the cyclization reaction that produces D-erythro-imidazole glycerol phosphate during the sixth step of histidine biosynthesis. The yeast His7 protein is a bifunctional protein which catalyzes an amido-transferase reaction that generates imidazole-glycerol phosphate and 5-aminoimidazol-4-carboxamide. The latter is the ribonucleotide used for purine biosynthesis. The enzyme also catalyzes the cyclization reaction that produces D-erythro-imidazole glycerol phosphate, and is involved in the fifth and sixth steps in histidine biosynthesis.; GO: 0000105 histidine biosynthetic process; PDB: 2VEP_A 2X30_A 1VZW_A 2WJZ_A 2LLE_A 2A0N_A 1THF_D 1GPW_E 1VH7_A 1KA9_F .... |
| >PRK02615 thiamine-phosphate pyrophosphorylase; Provisional | Back alignment and domain information |
|---|
Probab=97.57 E-value=0.0011 Score=65.39 Aligned_cols=85 Identities=24% Similarity=0.275 Sum_probs=64.3
Q ss_pred CEEEEecCCHHHHHHHHHcCCcEEEEcCCCCCC-C-CCccchHHHHHHHHHHhcCCCcEEEecCCCCHHHHHHHHHcCCC
Q 017718 224 PILVKGVLTAEDARIAVQAGAAGIIVSNHGARQ-L-DYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGAS 301 (367)
Q Consensus 224 Pv~vK~v~~~~~a~~~~~~G~d~i~vs~~gg~~-~-~~~~~~~~~l~~i~~~~~~~~~via~GGI~~~~dv~kal~lGAd 301 (367)
.++---+.+.+++..+.+.|+|+|.++--..+. . +..+..++.+..+.+.. ++||++-|||. .+++.+.+.+||+
T Consensus 241 ~iIG~S~Hs~~e~~~A~~~GaDYI~lGPvf~T~tKp~~~~~Gle~l~~~~~~~--~iPv~AiGGI~-~~ni~~l~~~Ga~ 317 (347)
T PRK02615 241 KIIGRSTTNPEEMAKAIAEGADYIGVGPVFPTPTKPGKAPAGLEYLKYAAKEA--PIPWFAIGGID-KSNIPEVLQAGAK 317 (347)
T ss_pred CEEEEecCCHHHHHHHHHcCCCEEEECCCcCCCCCCCCCCCCHHHHHHHHHhC--CCCEEEECCCC-HHHHHHHHHcCCc
Confidence 344334467899999999999999986533321 1 11234567777776655 79999999995 8899999999999
Q ss_pred EEEechHHHH
Q 017718 302 GIFIGRPVVY 311 (367)
Q Consensus 302 ~V~ig~~~l~ 311 (367)
+|.+++.++-
T Consensus 318 gVAvisaI~~ 327 (347)
T PRK02615 318 RVAVVRAIMG 327 (347)
T ss_pred EEEEeHHHhC
Confidence 9999998863
|
|
| >PRK08385 nicotinate-nucleotide pyrophosphorylase; Provisional | Back alignment and domain information |
|---|
Probab=97.55 E-value=0.0043 Score=59.27 Aligned_cols=147 Identities=22% Similarity=0.192 Sum_probs=90.1
Q ss_pred HHHHHHHHHHHcCCcEEEEecCCCCCCchhHHh---hhhcCCCCccccccccccccCccccccchhhHHHhhhccCccc-
Q 017718 137 VVAQLVRRAERAGFKAIALTVDTPRLGRREADI---KNRFTLPPFLTLKNFQGLDLGKMDEANDSGLAAYVAGQIDRSL- 212 (367)
Q Consensus 137 ~~~~~l~ra~~~G~~ai~itvd~p~~g~r~~~~---~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~- 212 (367)
.+.++++.+++.+.+..++.--...+|.|.-+. +.|...|.++.... .+.. + .+ |+.-. .+
T Consensus 106 ~T~~~v~~~~~~~~~~~i~~TRKt~Pg~R~l~k~Av~~GGg~~HR~gLsd--~vLi----k--dn----Hi~~~---~i~ 170 (278)
T PRK08385 106 ETRKLVELVKAVNPKVRVAGTRKTLPGLRLLDKKAIIIGGGEPHRFSLSD--AILI----K--DN----HLALV---PLE 170 (278)
T ss_pred HHHHHHHHHHhcCCCEEEEEeCCCChhhhHHHHHHHHhcCCcccCCCCcc--cEEE----c--cC----HHHHH---HHH
Confidence 456677777777888888877777788776332 33332232211100 0000 0 00 00000 01
Q ss_pred -cHHHHHhhc-CCCEEEEecCCHHHHHHHHHcCCcEEEEcCCCCCCCCCccchHHHHHHHHHHh-----cCCCcEEEecC
Q 017718 213 -SWKWLQTIT-KLPILVKGVLTAEDARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKAT-----QGRIPVFLDGG 285 (367)
Q Consensus 213 -~~~~l~~~~-~~Pv~vK~v~~~~~a~~~~~~G~d~i~vs~~gg~~~~~~~~~~~~l~~i~~~~-----~~~~~via~GG 285 (367)
..+.+|+.. ..+|.| .+-+.++++.+.++|+|.|.+.|- +.+.+.++++.+ +.++.+.++||
T Consensus 171 ~av~~~r~~~~~~kIeV-Ev~~leea~~a~~agaDiI~LDn~----------~~e~l~~~v~~l~~~~~~~~~~leaSGG 239 (278)
T PRK08385 171 EAIRRAKEFSVYKVVEV-EVESLEDALKAAKAGADIIMLDNM----------TPEEIREVIEALKREGLRERVKIEVSGG 239 (278)
T ss_pred HHHHHHHHhCCCCcEEE-EeCCHHHHHHHHHcCcCEEEECCC----------CHHHHHHHHHHHHhcCcCCCEEEEEECC
Confidence 112455443 245433 568999999999999999988772 233444444332 24788999999
Q ss_pred CCCHHHHHHHHHcCCCEEEechHHH
Q 017718 286 VRRGTDVFKALALGASGIFIGRPVV 310 (367)
Q Consensus 286 I~~~~dv~kal~lGAd~V~ig~~~l 310 (367)
| +.+.+.++..+|+|.+.+|.+..
T Consensus 240 I-~~~ni~~yA~tGvD~Is~galt~ 263 (278)
T PRK08385 240 I-TPENIEEYAKLDVDVISLGALTH 263 (278)
T ss_pred C-CHHHHHHHHHcCCCEEEeChhhc
Confidence 9 89999999999999999998664
|
|
| >PRK12653 fructose-6-phosphate aldolase; Reviewed | Back alignment and domain information |
|---|
Probab=97.55 E-value=0.022 Score=52.63 Aligned_cols=174 Identities=16% Similarity=0.162 Sum_probs=108.2
Q ss_pred hhHHHHHHHHHcCCceeecCCCC------CC----HHHHHhhCC--CceEEEEeecCCHHHHHHHHHHHHHcCCcEEEEe
Q 017718 89 GEYATARAASAAGTIMTLSSWST------SS----VEEVASTGP--GIRFFQLYVYKDRNVVAQLVRRAERAGFKAIALT 156 (367)
Q Consensus 89 ~e~~~a~aa~~~G~~~~vs~~~~------~~----~e~i~~~~~--~~~~~QLy~~~d~~~~~~~l~ra~~~G~~ai~it 156 (367)
.|+.-.+.+.+.|..-.++|..+ .+ +.++++..+ ++..+|+. ..|.+.+.+..++..+.+- .++|-
T Consensus 8 A~~~~i~~~~~~~~i~GvTTNPsll~k~g~~~~~~~~~i~~~~~~~~~v~~Qv~-~~d~e~mi~ea~~l~~~~~-ni~IK 85 (220)
T PRK12653 8 SDVVAVKALSRIFPLAGVTTNPSIIAAGKKPLEVVLPQLHEAMGGQGRLFAQVM-ATTAEGMVNDARKLRSIIA-DIVVK 85 (220)
T ss_pred CCHHHHHHHHhCCCccEEeCCHHHHHhcCCCHHHHHHHHHHHhCCCCcEEEEEe-cCCHHHHHHHHHHHHHhCC-CEEEE
Confidence 46777778888888777776532 22 234444433 46778987 5666655444444444432 23332
Q ss_pred cCCCCCCchhHHhhhhcCCCCccccccccccccCccccccchhhHHHhhhccCccccHHHHHhhcCCCEEEEecCCHHHH
Q 017718 157 VDTPRLGRREADIKNRFTLPPFLTLKNFQGLDLGKMDEANDSGLAAYVAGQIDRSLSWKWLQTITKLPILVKGVLTAEDA 236 (367)
Q Consensus 157 vd~p~~g~r~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~l~~~~~~Pv~vK~v~~~~~a 236 (367)
+ |.. .. ++ . ..+.|++ -++++.+-.+.+.+.|
T Consensus 86 I--P~T------------------~~----------------Gl-~----------A~~~L~~-~GI~vn~T~vfs~~Qa 117 (220)
T PRK12653 86 V--PVT------------------AE----------------GL-A----------AIKMLKA-EGIPTLGTAVYGAAQG 117 (220)
T ss_pred e--CCC------------------HH----------------HH-H----------HHHHHHH-cCCCeeEEEecCHHHH
Confidence 2 110 00 00 0 1113333 3899999999999999
Q ss_pred HHHHHcCCcEEEEcCCCCCCCCCccchHHHHHHHHHHh---cCCCcEEEecCCCCHHHHHHHHHcCCCEEEechHHHHHh
Q 017718 237 RIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKAT---QGRIPVFLDGGVRRGTDVFKALALGASGIFIGRPVVYSL 313 (367)
Q Consensus 237 ~~~~~~G~d~i~vs~~gg~~~~~~~~~~~~l~~i~~~~---~~~~~via~GGI~~~~dv~kal~lGAd~V~ig~~~l~~l 313 (367)
..+..+|+++|... =||--+.+......+.++.+.. +.+..|++.+ +++..++.+++.+|||.+-+.-.++..+
T Consensus 118 ~~Aa~aGa~yIspy--vgR~~~~g~dg~~~i~~i~~~~~~~~~~tkILaAS-~r~~~~v~~~~~~G~d~vTip~~vl~~l 194 (220)
T PRK12653 118 LLSALAGAEYVAPY--VNRIDAQGGSGIQTVTDLQQLLKMHAPQAKVLAAS-FKTPRQALDCLLAGCESITLPLDVAQQM 194 (220)
T ss_pred HHHHhcCCcEEEee--cChHhhcCCChHHHHHHHHHHHHhcCCCcEEEEEe-cCCHHHHHHHHHcCCCEEECCHHHHHHH
Confidence 99999999988763 2332233333444444444433 2356666654 9999999999999999999999888876
Q ss_pred hc
Q 017718 314 AA 315 (367)
Q Consensus 314 ~~ 315 (367)
..
T Consensus 195 ~~ 196 (220)
T PRK12653 195 IS 196 (220)
T ss_pred Hc
Confidence 54
|
|
| >cd00405 PRAI Phosphoribosylanthranilate isomerase (PRAI) catalyzes the fourth step of the tryptophan biosynthesis, the conversion of N-(5'- phosphoribosyl)-anthranilate (PRA) to 1-(o-carboxyphenylamino)- 1-deoxyribulose 5-phosphate (CdRP) | Back alignment and domain information |
|---|
Probab=97.54 E-value=0.006 Score=55.41 Aligned_cols=90 Identities=21% Similarity=0.227 Sum_probs=60.9
Q ss_pred HHHhhcCCCEEEEec-CCHHH--HHHHHHcCCcEEEEcCCCCCCC--CCccchHHHHHHHHHHhcCCCcEEEecCCCCHH
Q 017718 216 WLQTITKLPILVKGV-LTAED--ARIAVQAGAAGIIVSNHGARQL--DYVPATIMALEEVVKATQGRIPVFLDGGVRRGT 290 (367)
Q Consensus 216 ~l~~~~~~Pv~vK~v-~~~~~--a~~~~~~G~d~i~vs~~gg~~~--~~~~~~~~~l~~i~~~~~~~~~via~GGI~~~~ 290 (367)
.+++..+.+++-... .+..+ +..+.+.|+|++.+........ .+.+..++.++++. . ++|+++.||| +++
T Consensus 90 ~l~~~~~~~~i~~i~~~~~~~~~~~~~~~~~aD~il~dt~~~~~~Gg~g~~~~~~~l~~~~--~--~~PvilaGGI-~~~ 164 (203)
T cd00405 90 QLRARLGLPVIKAIRVKDEEDLEKAAAYAGEVDAILLDSKSGGGGGGTGKTFDWSLLRGLA--S--RKPVILAGGL-TPD 164 (203)
T ss_pred HHHhhcCCcEEEEEecCChhhHHHhhhccccCCEEEEcCCCCCCCCCCcceEChHHhhccc--c--CCCEEEECCC-ChH
Confidence 555555666653222 22222 2345568999998865321111 12345677777664 2 7899999999 999
Q ss_pred HHHHHHHcC-CCEEEechHHH
Q 017718 291 DVFKALALG-ASGIFIGRPVV 310 (367)
Q Consensus 291 dv~kal~lG-Ad~V~ig~~~l 310 (367)
++.+++..| +++|-+.|.+.
T Consensus 165 Nv~~~i~~~~~~gvdv~S~ie 185 (203)
T cd00405 165 NVAEAIRLVRPYGVDVSSGVE 185 (203)
T ss_pred HHHHHHHhcCCCEEEcCCccc
Confidence 999999999 99999999765
|
Most PRAIs are monomeric, monofunctional and thermolabile, but in some thermophile organisms PRAI is dimeric for reasons of stability and in others it is fused to other components of the tryptophan biosynthesis pathway to form multifunctional enzymes. |
| >PF00290 Trp_syntA: Tryptophan synthase alpha chain; InterPro: IPR002028 Tryptophan synthase (4 | Back alignment and domain information |
|---|
Probab=97.54 E-value=0.01 Score=56.09 Aligned_cols=152 Identities=16% Similarity=0.173 Sum_probs=87.7
Q ss_pred HHHHhhCC-CceEEEEeecCCHH-HHHHHHHHHHHcCCcEEEEecCCCCCCchhHHhhhhcCCCCccccccccccccCcc
Q 017718 115 EEVASTGP-GIRFFQLYVYKDRN-VVAQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLTLKNFQGLDLGKM 192 (367)
Q Consensus 115 e~i~~~~~-~~~~~QLy~~~d~~-~~~~~l~ra~~~G~~ai~itvd~p~~g~r~~~~~~~~~~p~~~~~~~~~~~~~~~~ 192 (367)
+++.+..+ .|.++--|.+.=.. -.++.+++++++|+++++| .|.|..
T Consensus 79 ~~ir~~~~~~pivlm~Y~N~i~~~G~e~F~~~~~~aGvdGlIi-pDLP~e------------------------------ 127 (259)
T PF00290_consen 79 KEIRKKEPDIPIVLMTYYNPIFQYGIERFFKEAKEAGVDGLII-PDLPPE------------------------------ 127 (259)
T ss_dssp HHHHHHCTSSEEEEEE-HHHHHHH-HHHHHHHHHHHTEEEEEE-TTSBGG------------------------------
T ss_pred HHHhccCCCCCEEEEeeccHHhccchHHHHHHHHHcCCCEEEE-cCCChH------------------------------
Confidence 34442333 67778778421011 1467889999999999876 443320
Q ss_pred ccccchhhHHHhhhccCccccHHHHHhhcCCCEEEEec--CCHHHHHHHHHcCCcEEEEcCCCC-CCCCCc--cchHHHH
Q 017718 193 DEANDSGLAAYVAGQIDRSLSWKWLQTITKLPILVKGV--LTAEDARIAVQAGAAGIIVSNHGA-RQLDYV--PATIMAL 267 (367)
Q Consensus 193 ~~~~~~~~~~~~~~~~d~~~~~~~l~~~~~~Pv~vK~v--~~~~~a~~~~~~G~d~i~vs~~gg-~~~~~~--~~~~~~l 267 (367)
..-.|....+..++.++.=.. .+.+-.+...+.+-.+|.+-..-| |..... ....+.+
T Consensus 128 -----------------e~~~~~~~~~~~gl~~I~lv~p~t~~~Ri~~i~~~a~gFiY~vs~~GvTG~~~~~~~~l~~~i 190 (259)
T PF00290_consen 128 -----------------ESEELREAAKKHGLDLIPLVAPTTPEERIKKIAKQASGFIYLVSRMGVTGSRTELPDELKEFI 190 (259)
T ss_dssp -----------------GHHHHHHHHHHTT-EEEEEEETTS-HHHHHHHHHH-SSEEEEESSSSSSSTTSSCHHHHHHHH
T ss_pred -----------------HHHHHHHHHHHcCCeEEEEECCCCCHHHHHHHHHhCCcEEEeeccCCCCCCcccchHHHHHHH
Confidence 000222222234544332222 445667776776667777633322 211111 2234567
Q ss_pred HHHHHHhcCCCcEEEecCCCCHHHHHHHHHcCCCEEEechHHHHHhhccC
Q 017718 268 EEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFIGRPVVYSLAAEG 317 (367)
Q Consensus 268 ~~i~~~~~~~~~via~GGI~~~~dv~kal~lGAd~V~ig~~~l~~l~~~G 317 (367)
..+++.. ++||++-=||++++|+.+.. .|||+|.||++++.-+...+
T Consensus 191 ~~ik~~~--~~Pv~vGFGI~~~e~~~~~~-~~aDGvIVGSa~v~~i~~~~ 237 (259)
T PF00290_consen 191 KRIKKHT--DLPVAVGFGISTPEQAKKLA-AGADGVIVGSAFVKIIEENG 237 (259)
T ss_dssp HHHHHTT--SS-EEEESSS-SHHHHHHHH-TTSSEEEESHHHHHHHHHTC
T ss_pred HHHHhhc--CcceEEecCCCCHHHHHHHH-ccCCEEEECHHHHHHHHHcc
Confidence 7776655 89999977999999999888 99999999999998665434
|
2.1.20 from EC) catalyzes the last step in the biosynthesis of tryptophan [, ]: |
| >cd00958 DhnA Class I fructose-1,6-bisphosphate (FBP) aldolases of the archaeal type (DhnA homologs) found in bacteria and archaea | Back alignment and domain information |
|---|
Probab=97.54 E-value=0.002 Score=59.78 Aligned_cols=65 Identities=31% Similarity=0.562 Sum_probs=51.6
Q ss_pred HHHHHHcCCcEEEEcCCCCCCCCCccchHHHHHHHHHHhcCCCcEEEecCC--CCHHH----HHHHHHcCCCEEEechHH
Q 017718 236 ARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGV--RRGTD----VFKALALGASGIFIGRPV 309 (367)
Q Consensus 236 a~~~~~~G~d~i~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~~~via~GGI--~~~~d----v~kal~lGAd~V~ig~~~ 309 (367)
++.+.++|+|+|-+++.+ ..+.+.++.+.. ++||++.||+ .+.+| +..++.+||++|.+||.+
T Consensus 149 ~~~a~~~GaD~Ik~~~~~---------~~~~~~~i~~~~--~~pvv~~GG~~~~~~~~~l~~~~~~~~~Ga~gv~vg~~i 217 (235)
T cd00958 149 ARIGAELGADIVKTKYTG---------DAESFKEVVEGC--PVPVVIAGGPKKDSEEEFLKMVYDAMEAGAAGVAVGRNI 217 (235)
T ss_pred HHHHHHHCCCEEEecCCC---------CHHHHHHHHhcC--CCCEEEeCCCCCCCHHHHHHHHHHHHHcCCcEEEechhh
Confidence 566889999999995322 456677777655 7899999997 66766 777788999999999988
Q ss_pred HH
Q 017718 310 VY 311 (367)
Q Consensus 310 l~ 311 (367)
+.
T Consensus 218 ~~ 219 (235)
T cd00958 218 FQ 219 (235)
T ss_pred hc
Confidence 74
|
Catalysis of the enzymes proceeds via a Schiff-base mechanism like other class I aldolases, although this subfamily is clearly divergent based on sequence similarity to other class I and class II (metal dependent) aldolase subfamilies. |
| >PLN02334 ribulose-phosphate 3-epimerase | Back alignment and domain information |
|---|
Probab=97.54 E-value=0.001 Score=61.68 Aligned_cols=96 Identities=23% Similarity=0.291 Sum_probs=64.4
Q ss_pred HHHHHHHHHcC-CcEEEEcC-CCCCC-CCCccchHHHHHHHHHHhcCCCcEEEecCCCCHHHHHHHHHcCCCEEEechHH
Q 017718 233 AEDARIAVQAG-AAGIIVSN-HGARQ-LDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFIGRPV 309 (367)
Q Consensus 233 ~~~a~~~~~~G-~d~i~vs~-~gg~~-~~~~~~~~~~l~~i~~~~~~~~~via~GGI~~~~dv~kal~lGAd~V~ig~~~ 309 (367)
.+.++...+.| +|+|.+.. +.|.. ....+...+.+.++++.. .++||.++||| +.+++.+.+.+|||.+.+||++
T Consensus 128 ~~~~~~~~~~~~~Dyi~~~~v~pg~~~~~~~~~~~~~i~~~~~~~-~~~~I~a~GGI-~~e~i~~l~~aGad~vvvgsai 205 (229)
T PLN02334 128 VEAVEPVVEKGLVDMVLVMSVEPGFGGQSFIPSMMDKVRALRKKY-PELDIEVDGGV-GPSTIDKAAEAGANVIVAGSAV 205 (229)
T ss_pred HHHHHHHHhccCCCEEEEEEEecCCCccccCHHHHHHHHHHHHhC-CCCcEEEeCCC-CHHHHHHHHHcCCCEEEEChHH
Confidence 45566666664 99996632 22222 223445667777776653 25799999999 7899999999999999999986
Q ss_pred HHHhhccChHHHHHHHHHHHHHHHHHH
Q 017718 310 VYSLAAEGEKGVRRVLEMLREEFELAM 336 (367)
Q Consensus 310 l~~l~~~G~~~v~~~i~~l~~el~~~m 336 (367)
+. .+.....++.++++++..|
T Consensus 206 ~~------~~d~~~~~~~l~~~~~~~~ 226 (229)
T PLN02334 206 FG------APDYAEVISGLRASVEKAA 226 (229)
T ss_pred hC------CCCHHHHHHHHHHHHHHhh
Confidence 42 1223445666666665543
|
|
| >PRK12655 fructose-6-phosphate aldolase; Reviewed | Back alignment and domain information |
|---|
Probab=97.53 E-value=0.022 Score=52.60 Aligned_cols=187 Identities=18% Similarity=0.164 Sum_probs=113.7
Q ss_pred hhHHHHHHHHHcCCceeecCCCC------CC----HHHHHhhCC--CceEEEEeecCCHHHHHHHHHHHHHcCCcEEEEe
Q 017718 89 GEYATARAASAAGTIMTLSSWST------SS----VEEVASTGP--GIRFFQLYVYKDRNVVAQLVRRAERAGFKAIALT 156 (367)
Q Consensus 89 ~e~~~a~aa~~~G~~~~vs~~~~------~~----~e~i~~~~~--~~~~~QLy~~~d~~~~~~~l~ra~~~G~~ai~it 156 (367)
+|+.-.+.+.+.|..-.++|..+ .+ +.++++..+ ++..+|++ ..|.+.+.+-.++..+.+- .++|-
T Consensus 8 A~~~~i~~~~~~~~i~GvTTNPsll~k~g~~~~~~~~~i~~~~~~~~~v~~qv~-~~d~e~mi~eA~~l~~~~~-nv~IK 85 (220)
T PRK12655 8 ANVAEVERLARIFPIAGVTTNPSIIAASKESIWEVLPRLQKAIGGEGILFAQTM-SRDAQGMVEEAKRLRNAIP-GIVVK 85 (220)
T ss_pred CCHHHHHHHHhCCCccEEeCCHHHHHhcCCCHHHHHHHHHHHhCCCCCEEEEEe-eCCHHHHHHHHHHHHHhCC-CEEEE
Confidence 46677777888887777776532 22 234444432 56777987 5566655444444444432 23332
Q ss_pred cCCCCCCchhHHhhhhcCCCCccccccccccccCccccccchhhHHHhhhccCccccHHHHHhhcCCCEEEEecCCHHHH
Q 017718 157 VDTPRLGRREADIKNRFTLPPFLTLKNFQGLDLGKMDEANDSGLAAYVAGQIDRSLSWKWLQTITKLPILVKGVLTAEDA 236 (367)
Q Consensus 157 vd~p~~g~r~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~l~~~~~~Pv~vK~v~~~~~a 236 (367)
+ |+. .. ++ . ..+.|++ -++++.+-.+.+.+.|
T Consensus 86 I--P~T------------------~~----------------Gl-~----------Ai~~L~~-~GI~vn~T~vfs~~Qa 117 (220)
T PRK12655 86 I--PVT------------------AE----------------GL-A----------AIKKLKK-EGIPTLGTAVYSAAQG 117 (220)
T ss_pred e--CCC------------------HH----------------HH-H----------HHHHHHH-CCCceeEeEecCHHHH
Confidence 2 110 00 00 0 1113333 3899999999999999
Q ss_pred HHHHHcCCcEEEEcCCCCCCCCCccchHHHHHHHHHHh---cCCCcEEEecCCCCHHHHHHHHHcCCCEEEechHHHHHh
Q 017718 237 RIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKAT---QGRIPVFLDGGVRRGTDVFKALALGASGIFIGRPVVYSL 313 (367)
Q Consensus 237 ~~~~~~G~d~i~vs~~gg~~~~~~~~~~~~l~~i~~~~---~~~~~via~GGI~~~~dv~kal~lGAd~V~ig~~~l~~l 313 (367)
..+..+|+++|... =||--+.|......+.++.+.. +.+..|++.+ +++..++.+++.+|||.+-+.-.++..+
T Consensus 118 ~~Aa~aGa~yIspy--vgR~~~~g~dg~~~i~~~~~~~~~~~~~tkILaAS-~r~~~~v~~~~~~G~d~vTip~~vl~~l 194 (220)
T PRK12655 118 LLAALAGAKYVAPY--VNRVDAQGGDGIRMVQELQTLLEMHAPESMVLAAS-FKTPRQALDCLLAGCQSITLPLDVAQQM 194 (220)
T ss_pred HHHHHcCCeEEEee--cchHhHcCCCHHHHHHHHHHHHHhcCCCcEEEEEe-cCCHHHHHHHHHcCCCEEECCHHHHHHH
Confidence 99999999987752 2332233333455555554443 2356666655 9999999999999999999999888776
Q ss_pred hccC--hHHHHHHHHHH
Q 017718 314 AAEG--EKGVRRVLEML 328 (367)
Q Consensus 314 ~~~G--~~~v~~~i~~l 328 (367)
..+- ..+++.+.+.|
T Consensus 195 ~~~p~t~~~~~~F~~dw 211 (220)
T PRK12655 195 LNTPAVESAIEKFEQDW 211 (220)
T ss_pred HcCCChHHHHHHHHHHH
Confidence 5432 24555555444
|
|
| >cd01573 modD_like ModD; Quinolinate phosphoribosyl transferase (QAPRTase or QPRTase) present in some modABC operons in bacteria, which are involved in molybdate transport | Back alignment and domain information |
|---|
Probab=97.53 E-value=0.0037 Score=59.61 Aligned_cols=83 Identities=23% Similarity=0.243 Sum_probs=57.8
Q ss_pred HHHhhcCCCEEEEecCCHHHHHHHHHcCCcEEEEcCCCCCCCCCccchHHHHHHHHHHhc---CCCcEEEecCCCCHHHH
Q 017718 216 WLQTITKLPILVKGVLTAEDARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQ---GRIPVFLDGGVRRGTDV 292 (367)
Q Consensus 216 ~l~~~~~~Pv~vK~v~~~~~a~~~~~~G~d~i~vs~~gg~~~~~~~~~~~~l~~i~~~~~---~~~~via~GGI~~~~dv 292 (367)
.+|+..+-..+.-.+.+.+++..+.++|+|+|-+++- .+.. +.++.+.++ .++|++++||| +.+.+
T Consensus 176 ~~R~~~~~~~IgVev~t~eea~~A~~~gaD~I~ld~~-------~p~~---l~~~~~~~~~~~~~i~i~AsGGI-~~~ni 244 (272)
T cd01573 176 RLRATAPEKKIVVEVDSLEEALAAAEAGADILQLDKF-------SPEE---LAELVPKLRSLAPPVLLAAAGGI-NIENA 244 (272)
T ss_pred HHHHhCCCCeEEEEcCCHHHHHHHHHcCCCEEEECCC-------CHHH---HHHHHHHHhccCCCceEEEECCC-CHHHH
Confidence 5555443222333457899999999999999998651 1112 233333222 26999999999 88999
Q ss_pred HHHHHcCCCEEEechHH
Q 017718 293 FKALALGASGIFIGRPV 309 (367)
Q Consensus 293 ~kal~lGAd~V~ig~~~ 309 (367)
.++...|+|++.+|..+
T Consensus 245 ~~~~~~Gvd~I~vsai~ 261 (272)
T cd01573 245 AAYAAAGADILVTSAPY 261 (272)
T ss_pred HHHHHcCCcEEEEChhh
Confidence 99999999999777653
|
In general, QPRTases are part of the de novo synthesis pathway of NAD in both prokaryotes and eukaryotes. They catalyse the reaction of quinolinic acid (QA) with 5-phosphoribosyl-1-pyrophosphate (PRPP) in the presence of Mg2+ to produce nicotinic acid mononucleotide (NAMN), pyrophosphate and carbon dioxide. |
| >TIGR03572 WbuZ glycosyl amidation-associated protein WbuZ | Back alignment and domain information |
|---|
Probab=97.51 E-value=0.00066 Score=62.98 Aligned_cols=75 Identities=25% Similarity=0.323 Sum_probs=60.6
Q ss_pred HHHHHHHHHcCCcEEEEcCCCCCCCCCccchHHHHHHHHHHhcCCCcEEEecCCCCHHHHHHHHHcCCCEEEechHHH
Q 017718 233 AEDARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFIGRPVV 310 (367)
Q Consensus 233 ~~~a~~~~~~G~d~i~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~~~via~GGI~~~~dv~kal~lGAd~V~ig~~~l 310 (367)
.+.|+...+.|++.|.+..-.+ .........+.+.++.+.+ .+||+++|||++.+|+.+++..||+.|.+|+..+
T Consensus 33 ~~~a~~~~~~g~~~i~i~dl~~-~~~~~~~n~~~~~~i~~~~--~~pv~~~ggi~~~~d~~~~~~~G~~~vilg~~~l 107 (232)
T TIGR03572 33 VNAARIYNAKGADELIVLDIDA-SKRGREPLFELISNLAEEC--FMPLTVGGGIRSLEDAKKLLSLGADKVSINTAAL 107 (232)
T ss_pred HHHHHHHHHcCCCEEEEEeCCC-cccCCCCCHHHHHHHHHhC--CCCEEEECCCCCHHHHHHHHHcCCCEEEEChhHh
Confidence 3568888999999988865332 1123346778888888876 7999999999999999999999999999999765
|
This clade of sequences is highly similar to the HisF protein, but generally represents the second HisF homolog in the genome where the other is an authentic HisF observed in the context of a complete histidine biosynthesis operon. The similarity between these WbuZ sequences and true HisFs is such that often the closest match by BLAST of a WbuZ is a HisF. Only by making a multiple sequence alignment is the homology relationship among the WbuZ sequences made apparent. WbuZ genes are invariably observed in the presence of a homolog of the HisH protein (designated WbuY) and a proposed N-acetyl sugar amidotransferase designated in WbuX in E. coli, IfnA in P. aeriginosa and PseA in C. jejuni. Similarly, this trio of genes is invariably found in the context of saccharide biosynthesis loci. It has been shown that the WbuYZ homologs are not essential components of the activity expressed by WbuX, leading to the proposal that these to pr |
| >PRK13585 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Provisional | Back alignment and domain information |
|---|
Probab=97.51 E-value=0.00054 Score=63.83 Aligned_cols=75 Identities=28% Similarity=0.445 Sum_probs=60.1
Q ss_pred HHHHHHHHHcCCcEEEEcCCCCCCCCCccchHHHHHHHHHHhcCCCcEEEecCCCCHHHHHHHHHcCCCEEEechHHH
Q 017718 233 AEDARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFIGRPVV 310 (367)
Q Consensus 233 ~~~a~~~~~~G~d~i~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~~~via~GGI~~~~dv~kal~lGAd~V~ig~~~l 310 (367)
.+.++.+.+.|++.+.+-...+ .........+.+.++.+.. .+|++++|||++.+|+.+++.+|||.|.+|+..+
T Consensus 35 ~e~a~~~~~~G~~~l~i~dl~~-~~~~~~~~~~~i~~i~~~~--~~~l~v~GGi~~~~~~~~~~~~Ga~~v~iGs~~~ 109 (241)
T PRK13585 35 VEVAKRWVDAGAETLHLVDLDG-AFEGERKNAEAIEKIIEAV--GVPVQLGGGIRSAEDAASLLDLGVDRVILGTAAV 109 (241)
T ss_pred HHHHHHHHHcCCCEEEEEechh-hhcCCcccHHHHHHHHHHc--CCcEEEcCCcCCHHHHHHHHHcCCCEEEEChHHh
Confidence 4678899999999998854221 1123345677888887766 7999999999999999999999999999999665
|
|
| >cd04723 HisA_HisF Phosphoribosylformimino-5-aminoimidazole carboxamide ribonucleotide (ProFAR) isomerase (HisA) and the cyclase subunit of imidazoleglycerol phosphate synthase (HisF) | Back alignment and domain information |
|---|
Probab=97.50 E-value=0.0005 Score=64.09 Aligned_cols=75 Identities=25% Similarity=0.243 Sum_probs=56.7
Q ss_pred HHHHHHHHcCCcEEEEcCCCCCCCCCccchHHHHHHHHHHhcCCCcEEEecCCCCHHHHHHHHHcCCCEEEechHHHHH
Q 017718 234 EDARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFIGRPVVYS 312 (367)
Q Consensus 234 ~~a~~~~~~G~d~i~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~~~via~GGI~~~~dv~kal~lGAd~V~ig~~~l~~ 312 (367)
+.++.+.+. ++.+++.+-.+ ......+..+.+.++.+.. .+||++.|||++.+|+.+++.+||++|.+|+++..+
T Consensus 150 ~~~~~~~~~-~~~li~~di~~-~G~~~g~~~~~~~~i~~~~--~ipvi~~GGi~s~edi~~l~~~G~~~vivGsal~~g 224 (233)
T cd04723 150 ELLRRLAKW-PEELIVLDIDR-VGSGQGPDLELLERLAARA--DIPVIAAGGVRSVEDLELLKKLGASGALVASALHDG 224 (233)
T ss_pred HHHHHHHHh-CCeEEEEEcCc-cccCCCcCHHHHHHHHHhc--CCCEEEeCCCCCHHHHHHHHHcCCCEEEEehHHHcC
Confidence 345667777 88777754211 0011235677888888766 799999999999999999999999999999998753
|
The ProFAR isomerase catalyzes the fourth step in histidine biosynthesis, an isomerisation of the aminoaldose moiety of ProFAR to the aminoketose of PRFAR (N-(5'-phospho-D-1'-ribulosylformimino)-5-amino-1-(5''-phospho-ribosyl)-4-imidazolecarboxamide). In bacteria and archaea, ProFAR isomerase is encoded by the HisA gene. The Imidazole glycerol phosphate synthase (IGPS) catalyzes the fifth step of histidine biosynthesis, the formation of the imidazole ring. IGPS converts N1-(5'-phosphoribulosyl)-formimino-5-aminoimidazole-4-carboxamide ribonucleotide (PRFAR) to imidazole glycerol phosphate (ImGP) and 5'-(5-aminoimidazole-4-carboxamide) ribonucleotide (AICAR). This conversion involves two tightly coupled reactions in distinct active sites of IGPS. The two catalytic domains can be fused, like in fungi and pl |
| >PRK07028 bifunctional hexulose-6-phosphate synthase/ribonuclease regulator; Validated | Back alignment and domain information |
|---|
Probab=97.48 E-value=0.00093 Score=67.81 Aligned_cols=91 Identities=21% Similarity=0.223 Sum_probs=65.4
Q ss_pred HHHhhcCCCEEEE-ec-CC-HHHHHHHHHcCCcEEEEcCCCCCCCCCccchHHHHHHHHHHhcCCCcEEEecCCCCHHHH
Q 017718 216 WLQTITKLPILVK-GV-LT-AEDARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDV 292 (367)
Q Consensus 216 ~l~~~~~~Pv~vK-~v-~~-~~~a~~~~~~G~d~i~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~~~via~GGI~~~~dv 292 (367)
..++ .++++++. .. .+ .+.++.+.+.|+|+|.+. .|.+....++...+.|+++++.. ++||++.||| +.+.+
T Consensus 102 ~a~~-~G~~~~~g~~s~~t~~e~~~~a~~~GaD~I~~~-pg~~~~~~~~~~~~~l~~l~~~~--~iPI~a~GGI-~~~n~ 176 (430)
T PRK07028 102 AARK-YGVRLMADLINVPDPVKRAVELEELGVDYINVH-VGIDQQMLGKDPLELLKEVSEEV--SIPIAVAGGL-DAETA 176 (430)
T ss_pred HHHH-cCCEEEEEecCCCCHHHHHHHHHhcCCCEEEEE-eccchhhcCCChHHHHHHHHhhC--CCcEEEECCC-CHHHH
Confidence 3444 57777763 22 23 466788899999999774 23221122344567788877655 6999999999 68999
Q ss_pred HHHHHcCCCEEEechHHHH
Q 017718 293 FKALALGASGIFIGRPVVY 311 (367)
Q Consensus 293 ~kal~lGAd~V~ig~~~l~ 311 (367)
.+++..|||.+.+||.++.
T Consensus 177 ~~~l~aGAdgv~vGsaI~~ 195 (430)
T PRK07028 177 AKAVAAGADIVIVGGNIIK 195 (430)
T ss_pred HHHHHcCCCEEEEChHHcC
Confidence 9999999999999998753
|
|
| >PRK06015 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional | Back alignment and domain information |
|---|
Probab=97.48 E-value=0.0038 Score=56.86 Aligned_cols=118 Identities=18% Similarity=0.210 Sum_probs=83.4
Q ss_pred EEEEeecCCHHHHHHHHHHHHHcCCcEEEEecCCCCCCchhHHhhhhcCCCCccccccccccccCccccccchhhHHHhh
Q 017718 126 FFQLYVYKDRNVVAQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLTLKNFQGLDLGKMDEANDSGLAAYVA 205 (367)
Q Consensus 126 ~~QLy~~~d~~~~~~~l~ra~~~G~~ai~itvd~p~~g~r~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 205 (367)
.+-+....+.+...++++.+.+.|++.+-||+++|.. .+
T Consensus 6 vv~Vir~~~~~~a~~ia~al~~gGi~~iEit~~tp~a--------------------------------------~~--- 44 (201)
T PRK06015 6 VIPVLLIDDVEHAVPLARALAAGGLPAIEITLRTPAA--------------------------------------LD--- 44 (201)
T ss_pred EEEEEEcCCHHHHHHHHHHHHHCCCCEEEEeCCCccH--------------------------------------HH---
Confidence 3445557788999999999999999999999987631 00
Q ss_pred hccCccccHHHHHhhc-CCCEEEEecCCHHHHHHHHHcCCcEEEEcCCCCCCCCCccchHHHHHHHHHHhcCCCcEEEec
Q 017718 206 GQIDRSLSWKWLQTIT-KLPILVKGVLTAEDARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDG 284 (367)
Q Consensus 206 ~~~d~~~~~~~l~~~~-~~Pv~vK~v~~~~~a~~~~~~G~d~i~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~~~via~G 284 (367)
.++.+++.. ++-|.+..|++.++++.+.++|+++|+--+ ...+++..+.+ . ++|.+ =
T Consensus 45 -------~I~~l~~~~~~~~vGAGTVl~~e~a~~ai~aGA~FivSP~----------~~~~vi~~a~~-~--~i~~i--P 102 (201)
T PRK06015 45 -------AIRAVAAEVEEAIVGAGTILNAKQFEDAAKAGSRFIVSPG----------TTQELLAAAND-S--DVPLL--P 102 (201)
T ss_pred -------HHHHHHHHCCCCEEeeEeCcCHHHHHHHHHcCCCEEECCC----------CCHHHHHHHHH-c--CCCEe--C
Confidence 122444444 356777778999999999999999986421 12333433322 2 45544 5
Q ss_pred CCCCHHHHHHHHHcCCCEEEec
Q 017718 285 GVRRGTDVFKALALGASGIFIG 306 (367)
Q Consensus 285 GI~~~~dv~kal~lGAd~V~ig 306 (367)
|+.|+.++..++.+||+.|=+-
T Consensus 103 G~~TptEi~~A~~~Ga~~vK~F 124 (201)
T PRK06015 103 GAATPSEVMALREEGYTVLKFF 124 (201)
T ss_pred CCCCHHHHHHHHHCCCCEEEEC
Confidence 8999999999999999987543
|
|
| >PF01791 DeoC: DeoC/LacD family aldolase; InterPro: IPR002915 This family includes the enzyme deoxyribose-phosphate aldolase, which is involved in nucleotide metabolism | Back alignment and domain information |
|---|
Probab=97.45 E-value=0.00098 Score=62.08 Aligned_cols=87 Identities=29% Similarity=0.424 Sum_probs=59.3
Q ss_pred hcCCCEEEEecCCHH-------------HHHHHHHcCCcEEEEcCCCCCCCCCccchHHHHHHHHHHhcCCCc----EEE
Q 017718 220 ITKLPILVKGVLTAE-------------DARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIP----VFL 282 (367)
Q Consensus 220 ~~~~Pv~vK~v~~~~-------------~a~~~~~~G~d~i~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~~~----via 282 (367)
.+++|+++=.....+ .++.+.++|+|.|-.+- |+. ........+.+.++.+.. .+| |.+
T Consensus 123 ~~gl~vIlE~~l~~~~~~~~~~~~~I~~a~ria~e~GaD~vKt~t-g~~-~~~t~~~~~~~~~~~~~~--~~p~~~~Vk~ 198 (236)
T PF01791_consen 123 KYGLKVILEPYLRGEEVADEKKPDLIARAARIAAELGADFVKTST-GKP-VGATPEDVELMRKAVEAA--PVPGKVGVKA 198 (236)
T ss_dssp TSEEEEEEEECECHHHBSSTTHHHHHHHHHHHHHHTT-SEEEEE--SSS-SCSHHHHHHHHHHHHHTH--SSTTTSEEEE
T ss_pred cCCcEEEEEEecCchhhcccccHHHHHHHHHHHHHhCCCEEEecC-Ccc-ccccHHHHHHHHHHHHhc--CCCcceEEEE
Confidence 457888887443322 26778999999999974 322 222233444555555433 466 999
Q ss_pred ecCC------CCHHHHHHHHHcCC--CEEEechHHH
Q 017718 283 DGGV------RRGTDVFKALALGA--SGIFIGRPVV 310 (367)
Q Consensus 283 ~GGI------~~~~dv~kal~lGA--d~V~ig~~~l 310 (367)
+||| ++.+++.+++.+|| .++..||.+.
T Consensus 199 sGGi~~~~~~~~l~~a~~~i~aGa~~~G~~~Gr~i~ 234 (236)
T PF01791_consen 199 SGGIDAEDFLRTLEDALEFIEAGADRIGTSSGRNIW 234 (236)
T ss_dssp ESSSSHHHHHHSHHHHHHHHHTTHSEEEEEEHHHHH
T ss_pred eCCCChHHHHHHHHHHHHHHHcCChhHHHHHHHHHH
Confidence 9999 99999999999999 7888888653
|
|
| >PRK08072 nicotinate-nucleotide pyrophosphorylase; Provisional | Back alignment and domain information |
|---|
Probab=97.44 E-value=0.0073 Score=57.75 Aligned_cols=84 Identities=24% Similarity=0.133 Sum_probs=63.8
Q ss_pred HHHhhcCCC-EEEEecCCHHHHHHHHHcCCcEEEEcCCCCCCCCCccchHHHHHHHHHHhcCCCcEEEecCCCCHHHHHH
Q 017718 216 WLQTITKLP-ILVKGVLTAEDARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFK 294 (367)
Q Consensus 216 ~l~~~~~~P-v~vK~v~~~~~a~~~~~~G~d~i~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~~~via~GGI~~~~dv~k 294 (367)
.+|+..+-. .+-=.+.+.++++.+.+.|+|+|.+.+ -..+.+.++++..+.++|+.+.||| +.+++.+
T Consensus 180 ~aR~~~~~~~~Igvsv~tleea~~A~~~gaDyI~lD~----------~~~e~l~~~~~~~~~~i~i~AiGGI-t~~ni~~ 248 (277)
T PRK08072 180 SVREKLGHMVKIEVETETEEQVREAVAAGADIIMFDN----------RTPDEIREFVKLVPSAIVTEASGGI-TLENLPA 248 (277)
T ss_pred HHHHhCCCCCEEEEEeCCHHHHHHHHHcCCCEEEECC----------CCHHHHHHHHHhcCCCceEEEECCC-CHHHHHH
Confidence 566655422 222234788999999999999998843 2336677776665446889999999 8899999
Q ss_pred HHHcCCCEEEechHHH
Q 017718 295 ALALGASGIFIGRPVV 310 (367)
Q Consensus 295 al~lGAd~V~ig~~~l 310 (367)
+...|+|.+.+|.+..
T Consensus 249 ~a~~Gvd~IAvg~l~~ 264 (277)
T PRK08072 249 YGGTGVDYISLGFLTH 264 (277)
T ss_pred HHHcCCCEEEEChhhc
Confidence 9999999999998664
|
|
| >PRK11840 bifunctional sulfur carrier protein/thiazole synthase protein; Provisional | Back alignment and domain information |
|---|
Probab=97.44 E-value=0.00083 Score=64.94 Aligned_cols=86 Identities=19% Similarity=0.295 Sum_probs=63.2
Q ss_pred CCCEEEEecCCHHHHHHHHHcCCcEEEEcCC-CCCCCCCccchHHHHHHHHHHhcCCCcEEEecCCCCHHHHHHHHHcCC
Q 017718 222 KLPILVKGVLTAEDARIAVQAGAAGIIVSNH-GARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGA 300 (367)
Q Consensus 222 ~~Pv~vK~v~~~~~a~~~~~~G~d~i~vs~~-gg~~~~~~~~~~~~l~~i~~~~~~~~~via~GGI~~~~dv~kal~lGA 300 (367)
+.-+++=...++..++++.+.|+-++.--.. -|+ ..+....+.|..+.+.. ++||+.++||.+++|+.+++.+||
T Consensus 197 Gf~v~~yc~~d~~~a~~l~~~g~~avmPl~~pIGs--g~gv~~p~~i~~~~e~~--~vpVivdAGIg~~sda~~AmelGa 272 (326)
T PRK11840 197 GFQVMVYCSDDPIAAKRLEDAGAVAVMPLGAPIGS--GLGIQNPYTIRLIVEGA--TVPVLVDAGVGTASDAAVAMELGC 272 (326)
T ss_pred CCEEEEEeCCCHHHHHHHHhcCCEEEeeccccccC--CCCCCCHHHHHHHHHcC--CCcEEEeCCCCCHHHHHHHHHcCC
Confidence 3334333457899999999999954443111 111 12344777787777764 799999999999999999999999
Q ss_pred CEEEechHHHH
Q 017718 301 SGIFIGRPVVY 311 (367)
Q Consensus 301 d~V~ig~~~l~ 311 (367)
|+|.+.+++..
T Consensus 273 dgVL~nSaIa~ 283 (326)
T PRK11840 273 DGVLMNTAIAE 283 (326)
T ss_pred CEEEEcceecc
Confidence 99999997753
|
|
| >COG2022 ThiG Uncharacterized enzyme of thiazole biosynthesis [Nucleotide transport and metabolism] | Back alignment and domain information |
|---|
Probab=97.43 E-value=0.0006 Score=62.50 Aligned_cols=86 Identities=20% Similarity=0.281 Sum_probs=64.8
Q ss_pred CCCEEEEecCCHHHHHHHHHcCCcEEEEcCC-CCCCCCCccchHHHHHHHHHHhcCCCcEEEecCCCCHHHHHHHHHcCC
Q 017718 222 KLPILVKGVLTAEDARIAVQAGAAGIIVSNH-GARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGA 300 (367)
Q Consensus 222 ~~Pv~vK~v~~~~~a~~~~~~G~d~i~vs~~-gg~~~~~~~~~~~~l~~i~~~~~~~~~via~GGI~~~~dv~kal~lGA 300 (367)
+.-|..-...++-.|+++.++|+.+|.=-+. -|+ .-|+-+.+.|.-|++.. ++|||.|-||.++.|+..++.+|+
T Consensus 130 GF~VlPY~~dD~v~arrLee~GcaavMPl~aPIGS--g~G~~n~~~l~iiie~a--~VPviVDAGiG~pSdAa~aMElG~ 205 (262)
T COG2022 130 GFVVLPYTTDDPVLARRLEEAGCAAVMPLGAPIGS--GLGLQNPYNLEIIIEEA--DVPVIVDAGIGTPSDAAQAMELGA 205 (262)
T ss_pred CCEEeeccCCCHHHHHHHHhcCceEeccccccccC--CcCcCCHHHHHHHHHhC--CCCEEEeCCCCChhHHHHHHhccc
Confidence 3444444446677899999999988763221 111 12455677787777776 899999999999999999999999
Q ss_pred CEEEechHHHH
Q 017718 301 SGIFIGRPVVY 311 (367)
Q Consensus 301 d~V~ig~~~l~ 311 (367)
|+|.+-+++--
T Consensus 206 DaVL~NTAiA~ 216 (262)
T COG2022 206 DAVLLNTAIAR 216 (262)
T ss_pred ceeehhhHhhc
Confidence 99999997743
|
|
| >PRK04128 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Provisional | Back alignment and domain information |
|---|
Probab=97.41 E-value=0.00073 Score=62.81 Aligned_cols=73 Identities=19% Similarity=0.303 Sum_probs=57.0
Q ss_pred HHHHHHHHcCCcEEEEcCCCCCCCCCccchHHHHHHHHHHhcCCCcEEEecCCCCHHHHHHHHHcCCCEEEechHHH
Q 017718 234 EDARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFIGRPVV 310 (367)
Q Consensus 234 ~~a~~~~~~G~d~i~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~~~via~GGI~~~~dv~kal~lGAd~V~ig~~~l 310 (367)
+.|+...+. ++.+.+-.--| ...+.+..++.+.++.+.+ .+||+++|||++-+|+.+++.+||+.|.+|+..+
T Consensus 34 ~~a~~~~~~-~~~l~ivDldg-a~~g~~~n~~~i~~i~~~~--~~pv~~gGGIrs~edv~~l~~~G~~~vivGtaa~ 106 (228)
T PRK04128 34 EIALRFSEY-VDKIHVVDLDG-AFEGKPKNLDVVKNIIRET--GLKVQVGGGLRTYESIKDAYEIGVENVIIGTKAF 106 (228)
T ss_pred HHHHHHHHh-CCEEEEEECcc-hhcCCcchHHHHHHHHhhC--CCCEEEcCCCCCHHHHHHHHHCCCCEEEECchhc
Confidence 456777776 88887743222 1223456788899988766 7999999999999999999999999999999754
|
|
| >COG0106 HisA Phosphoribosylformimino-5-aminoimidazole carboxamide ribonucleotide (ProFAR) isomerase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=97.41 E-value=0.00098 Score=61.83 Aligned_cols=73 Identities=27% Similarity=0.388 Sum_probs=61.2
Q ss_pred HHHHHHHHcCCcEEEEcCCCCCCCCC--ccchHHHHHHHHHHhcCCCcEEEecCCCCHHHHHHHHHc-CCCEEEechHHH
Q 017718 234 EDARIAVQAGAAGIIVSNHGARQLDY--VPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALAL-GASGIFIGRPVV 310 (367)
Q Consensus 234 ~~a~~~~~~G~d~i~vs~~gg~~~~~--~~~~~~~l~~i~~~~~~~~~via~GGI~~~~dv~kal~l-GAd~V~ig~~~l 310 (367)
+.+++..+.|+..|+++.-. .|+ .-+.++.+.++.+++ ++|||++|||++-+|+..+-.+ |..+|.+||+++
T Consensus 151 ~l~~~~~~~g~~~ii~TdI~---~DGtl~G~n~~l~~~l~~~~--~ipviaSGGv~s~~Di~~l~~~~G~~GvIvG~ALy 225 (241)
T COG0106 151 ELAKRLEEVGLAHILYTDIS---RDGTLSGPNVDLVKELAEAV--DIPVIASGGVSSLDDIKALKELSGVEGVIVGRALY 225 (241)
T ss_pred HHHHHHHhcCCCeEEEEecc---cccccCCCCHHHHHHHHHHh--CcCEEEecCcCCHHHHHHHHhcCCCcEEEEehHHh
Confidence 56889999999999986521 111 235788889999888 8999999999999999999999 999999999987
Q ss_pred H
Q 017718 311 Y 311 (367)
Q Consensus 311 ~ 311 (367)
-
T Consensus 226 ~ 226 (241)
T COG0106 226 E 226 (241)
T ss_pred c
Confidence 5
|
|
| >COG0107 HisF Imidazoleglycerol-phosphate synthase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=97.40 E-value=0.0011 Score=60.90 Aligned_cols=76 Identities=25% Similarity=0.287 Sum_probs=61.3
Q ss_pred HHHHHHHHHcCCcEEEEcCCCCCCCCCccchHHHHHHHHHHhcCCCcEEEecCCCCHHHHHHHHHcCCCEEEechHHHH
Q 017718 233 AEDARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFIGRPVVY 311 (367)
Q Consensus 233 ~~~a~~~~~~G~d~i~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~~~via~GGI~~~~dv~kal~lGAd~V~ig~~~l~ 311 (367)
.+.|++-.+.|||-++.-.-.. ..++....++.+.++++.+ -+|+..-|||++-+|+.+.|.+|||-|.|.++.+.
T Consensus 33 VelA~~Y~e~GADElvFlDItA-s~~gr~~~~~vv~r~A~~v--fiPltVGGGI~s~eD~~~ll~aGADKVSINsaAv~ 108 (256)
T COG0107 33 VELAKRYNEEGADELVFLDITA-SSEGRETMLDVVERVAEQV--FIPLTVGGGIRSVEDARKLLRAGADKVSINSAAVK 108 (256)
T ss_pred HHHHHHHHHcCCCeEEEEeccc-ccccchhHHHHHHHHHhhc--eeeeEecCCcCCHHHHHHHHHcCCCeeeeChhHhc
Confidence 4779999999999998733111 1223345778888888877 79999999999999999999999999999997764
|
|
| >PRK14114 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Provisional | Back alignment and domain information |
|---|
Probab=97.40 E-value=0.00076 Score=63.22 Aligned_cols=73 Identities=15% Similarity=0.254 Sum_probs=59.1
Q ss_pred HHHHHHHHcCCcEEEEcCC--CCCCCCCccchHHHHHHHHHHhcCCCcEEEecCCCCHHHHHHHHHc-----C-CCEEEe
Q 017718 234 EDARIAVQAGAAGIIVSNH--GARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALAL-----G-ASGIFI 305 (367)
Q Consensus 234 ~~a~~~~~~G~d~i~vs~~--gg~~~~~~~~~~~~l~~i~~~~~~~~~via~GGI~~~~dv~kal~l-----G-Ad~V~i 305 (367)
+-++.+.+.|+..|++.+- -|+. .| +.++.+.++.+.. ++|||++|||++.+|+.++..+ | +++|.+
T Consensus 148 e~~~~~~~~g~~~ii~tdI~rdGt~--~G-~d~el~~~l~~~~--~~pviasGGv~s~~Dl~~l~~~~~~~~g~v~gviv 222 (241)
T PRK14114 148 SLLKRLKEYGLEEIVHTEIEKDGTL--QE-HDFSLTRKIAIEA--EVKVFAAGGISSENSLKTAQRVHRETNGLLKGVIV 222 (241)
T ss_pred HHHHHHHhcCCCEEEEEeechhhcC--CC-cCHHHHHHHHHHC--CCCEEEECCCCCHHHHHHHHhcccccCCcEEEEEE
Confidence 5588899999999998641 1211 22 5778888888775 8999999999999999999987 6 999999
Q ss_pred chHHHH
Q 017718 306 GRPVVY 311 (367)
Q Consensus 306 g~~~l~ 311 (367)
|+++..
T Consensus 223 g~Al~~ 228 (241)
T PRK14114 223 GRAFLE 228 (241)
T ss_pred ehHHHC
Confidence 999865
|
|
| >cd01568 QPRTase_NadC Quinolinate phosphoribosyl transferase (QAPRTase or QPRTase), also called nicotinate-nucleotide pyrophosphorylase, is involved in the de novo synthesis of NAD in both prokaryotes and eukaryotes | Back alignment and domain information |
|---|
Probab=97.40 E-value=0.0073 Score=57.53 Aligned_cols=85 Identities=26% Similarity=0.243 Sum_probs=62.6
Q ss_pred HHHHHhhcC-CCEEEEecCCHHHHHHHHHcCCcEEEEcCCCCCCCCCccchHHHHHHHHHHhcC--CCcEEEecCCCCHH
Q 017718 214 WKWLQTITK-LPILVKGVLTAEDARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQG--RIPVFLDGGVRRGT 290 (367)
Q Consensus 214 ~~~l~~~~~-~Pv~vK~v~~~~~a~~~~~~G~d~i~vs~~gg~~~~~~~~~~~~l~~i~~~~~~--~~~via~GGI~~~~ 290 (367)
++.+|+..+ ...+.-.+.+.+++..+.++|+|+|-+.+- ..+.+.++.+.++. ++||.++|||. .+
T Consensus 171 v~~~r~~~~~~~~I~vev~t~eea~~A~~~gaD~I~ld~~----------~~e~l~~~v~~i~~~~~i~i~asGGIt-~~ 239 (269)
T cd01568 171 VKRARAAAPFEKKIEVEVETLEEAEEALEAGADIIMLDNM----------SPEELKEAVKLLKGLPRVLLEASGGIT-LE 239 (269)
T ss_pred HHHHHHhCCCCCeEEEecCCHHHHHHHHHcCCCEEEECCC----------CHHHHHHHHHHhccCCCeEEEEECCCC-HH
Confidence 447777664 223344567899999999999999999651 12444555444433 78999999995 78
Q ss_pred HHHHHHHcCCCEEEechHH
Q 017718 291 DVFKALALGASGIFIGRPV 309 (367)
Q Consensus 291 dv~kal~lGAd~V~ig~~~ 309 (367)
.+.++...|||++.+|..+
T Consensus 240 ni~~~a~~Gad~Isvgal~ 258 (269)
T cd01568 240 NIRAYAETGVDVISTGALT 258 (269)
T ss_pred HHHHHHHcCCCEEEEcHHH
Confidence 8999999999999998654
|
It catalyses the reaction of quinolinic acid (QA) with 5-phosphoribosyl-1-pyrophosphate (PRPP) in the presence of Mg2+ to produce nicotinic acid mononucleotide (NAMN), pyrophosphate and carbon dioxide. QPRTase functions as a homodimer with two active sites, each formed by the C-terminal region of one subunit and the N-terminal region of the other. |
| >PRK06015 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional | Back alignment and domain information |
|---|
Probab=97.39 E-value=0.015 Score=52.98 Aligned_cols=155 Identities=17% Similarity=0.108 Sum_probs=97.7
Q ss_pred hHHHHHHHHHcCCceeecCCCCC----CHHHHHhhCCCceEEEEeecCCHHHHHHHHHHHHHcCCcEEEEecCCCCCCch
Q 017718 90 EYATARAASAAGTIMTLSSWSTS----SVEEVASTGPGIRFFQLYVYKDRNVVAQLVRRAERAGFKAIALTVDTPRLGRR 165 (367)
Q Consensus 90 e~~~a~aa~~~G~~~~vs~~~~~----~~e~i~~~~~~~~~~QLy~~~d~~~~~~~l~ra~~~G~~ai~itvd~p~~g~r 165 (367)
-..+++++.+.|+..+==|+++. .++++.+..|+ +..+.--=.+.+.++++.++|++.++ +|..
T Consensus 18 a~~ia~al~~gGi~~iEit~~tp~a~~~I~~l~~~~~~-----~~vGAGTVl~~e~a~~ai~aGA~Fiv----SP~~--- 85 (201)
T PRK06015 18 AVPLARALAAGGLPAIEITLRTPAALDAIRAVAAEVEE-----AIVGAGTILNAKQFEDAAKAGSRFIV----SPGT--- 85 (201)
T ss_pred HHHHHHHHHHCCCCEEEEeCCCccHHHHHHHHHHHCCC-----CEEeeEeCcCHHHHHHHHHcCCCEEE----CCCC---
Confidence 35899999999998764344332 23444444442 22222222234467888889998876 2321
Q ss_pred hHHhhhhcCCCCccccccccccccCccccccchhhHHHhhhccCccccHHHHHhhcCCCEEEEecCCHHHHHHHHHcCCc
Q 017718 166 EADIKNRFTLPPFLTLKNFQGLDLGKMDEANDSGLAAYVAGQIDRSLSWKWLQTITKLPILVKGVLTAEDARIAVQAGAA 245 (367)
Q Consensus 166 ~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~l~~~~~~Pv~vK~v~~~~~a~~~~~~G~d 245 (367)
++ +.-...+..++|++ =+++++.++..+.++|++
T Consensus 86 -------------------------------------------~~--~vi~~a~~~~i~~i-PG~~TptEi~~A~~~Ga~ 119 (201)
T PRK06015 86 -------------------------------------------TQ--ELLAAANDSDVPLL-PGAATPSEVMALREEGYT 119 (201)
T ss_pred -------------------------------------------CH--HHHHHHHHcCCCEe-CCCCCHHHHHHHHHCCCC
Confidence 01 01011234578875 488999999999999999
Q ss_pred EEEEcCCCCCCCCCccchHHHHHHHHHHhcCCCcEEEecCCCCHHHHHHHHHcCCCEEEechHHH
Q 017718 246 GIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFIGRPVV 310 (367)
Q Consensus 246 ~i~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~~~via~GGI~~~~dv~kal~lGAd~V~ig~~~l 310 (367)
.|.+.-.+ .-+|+..+ +.++.-++ +++++..|||.. +++...|.+|+.++..|+.+.
T Consensus 120 ~vK~FPa~---~~GG~~yi---kal~~plp-~~~l~ptGGV~~-~n~~~~l~ag~~~~~ggs~l~ 176 (201)
T PRK06015 120 VLKFFPAE---QAGGAAFL---KALSSPLA-GTFFCPTGGISL-KNARDYLSLPNVVCVGGSWVA 176 (201)
T ss_pred EEEECCch---hhCCHHHH---HHHHhhCC-CCcEEecCCCCH-HHHHHHHhCCCeEEEEchhhC
Confidence 99995311 11234433 33433343 799999999966 789999999988777766543
|
|
| >TIGR01859 fruc_bis_ald_ fructose-1,6-bisphosphate aldolase, class II, various bacterial and amitochondriate protist | Back alignment and domain information |
|---|
Probab=97.38 E-value=0.046 Score=52.43 Aligned_cols=108 Identities=25% Similarity=0.330 Sum_probs=77.8
Q ss_pred CCHHHHHHHHH-cCCcEEEEcC---CCCCCCCCccchHHHHHHHHHHhcCCCcEEEec--CCCCHHHHHHHHHcCCCEEE
Q 017718 231 LTAEDARIAVQ-AGAAGIIVSN---HGARQLDYVPATIMALEEVVKATQGRIPVFLDG--GVRRGTDVFKALALGASGIF 304 (367)
Q Consensus 231 ~~~~~a~~~~~-~G~d~i~vs~---~gg~~~~~~~~~~~~l~~i~~~~~~~~~via~G--GI~~~~dv~kal~lGAd~V~ 304 (367)
.++++|+.+.+ .|+|++.++- ||-+. ....-.++.|.++.+.+ ++|+.+=| ||. .+++.+++.+|++.|-
T Consensus 153 t~~eea~~f~~~tgvD~Lavs~Gt~hg~~~-~~~~l~~e~L~~i~~~~--~iPlv~hGgSGi~-~e~i~~~i~~Gi~kiN 228 (282)
T TIGR01859 153 ADPDEAEQFVKETGVDYLAAAIGTSHGKYK-GEPGLDFERLKEIKELT--NIPLVLHGASGIP-EEQIKKAIKLGIAKIN 228 (282)
T ss_pred CCHHHHHHHHHHHCcCEEeeccCccccccC-CCCccCHHHHHHHHHHh--CCCEEEECCCCCC-HHHHHHHHHcCCCEEE
Confidence 58899999886 9999999752 44221 12234688899998887 79999999 886 4779999999999999
Q ss_pred echHHHHHhhc-------cC------hHHHHHHHHHHHHHHHHHHHHhCCC
Q 017718 305 IGRPVVYSLAA-------EG------EKGVRRVLEMLREEFELAMALSGCR 342 (367)
Q Consensus 305 ig~~~l~~l~~-------~G------~~~v~~~i~~l~~el~~~m~~~G~~ 342 (367)
++|.+..+... .. ..-.....+.+++.+++.|+.+|..
T Consensus 229 v~T~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~gs~ 279 (282)
T TIGR01859 229 IDTDCRIAFTAAIRKVLTEKKDEYDPRKILGPAREAIKETVKEKMRLFGSA 279 (282)
T ss_pred ECcHHHHHHHHHHHHHHHhCCCcCCHHHHHHHHHHHHHHHHHHHHHHhCCC
Confidence 99977654221 00 1223344567778888888888753
|
This model represents of one of several subtypes of the class II fructose-1,6-bisphosphate aldolase, an enzyme of glycolysis. The subtypes are split into several models to allow separation of a family of tagatose bisphosphate aldolases. This form is found in Gram-positive bacteria, a variety of Gram-negative, and in amitochondriate protists. The class II enzymes share homology with tagatose bisphosphate aldolase but not with class I aldolase. |
| >TIGR00007 phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase | Back alignment and domain information |
|---|
Probab=97.38 E-value=0.0012 Score=61.14 Aligned_cols=75 Identities=31% Similarity=0.450 Sum_probs=60.6
Q ss_pred HHHHHHHHHcCCcEEEEcCCCCCCCCCccchHHHHHHHHHHhcCCCcEEEecCCCCHHHHHHHHHcCCCEEEechHHH
Q 017718 233 AEDARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFIGRPVV 310 (367)
Q Consensus 233 ~~~a~~~~~~G~d~i~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~~~via~GGI~~~~dv~kal~lGAd~V~ig~~~l 310 (367)
.+.|+...+.|++.+.+-.-.+. ..+.....+.+.++.+.+ .+|+...|||++.+|+.+++.+|||.|.+|+..+
T Consensus 31 ~~~a~~~~~~g~~~l~v~dl~~~-~~g~~~~~~~i~~i~~~~--~~pi~~ggGI~~~ed~~~~~~~Ga~~vvlgs~~l 105 (230)
T TIGR00007 31 VEAAKKWEEEGAERIHVVDLDGA-KEGGPVNLPVIKKIVRET--GVPVQVGGGIRSLEDVEKLLDLGVDRVIIGTAAV 105 (230)
T ss_pred HHHHHHHHHcCCCEEEEEeCCcc-ccCCCCcHHHHHHHHHhc--CCCEEEeCCcCCHHHHHHHHHcCCCEEEEChHHh
Confidence 35688889999999998543221 223445778888888876 7999999999999999999999999999998665
|
Examples of this enzyme in Actinobacteria have been found to be bifunctional, also possessing phosphoribosylanthranilate isomerase activity ; the trusted cutoff here has now been raised to 275.0 to exclude the bifunctional group, now represented by model TIGR01919. HisA from Lactococcus lactis was reported to be inactive (MEDLINE:93322317). |
| >TIGR02129 hisA_euk phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase, eukaryotic type | Back alignment and domain information |
|---|
Probab=97.38 E-value=0.00067 Score=63.75 Aligned_cols=69 Identities=23% Similarity=0.203 Sum_probs=59.7
Q ss_pred HHHHHHHHHcCCcEEEEcCCCCCCCCCccchHHHHHHHHHHhcCCCcEEEecCCCCHHHHHHHHHcCCCEEEechHHHH
Q 017718 233 AEDARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFIGRPVVY 311 (367)
Q Consensus 233 ~~~a~~~~~~G~d~i~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~~~via~GGI~~~~dv~kal~lGAd~V~ig~~~l~ 311 (367)
.+.|+...+.|++.+.+-. + +.+..+.+.++.+.+ .+||...||||+ +++.+++.+||+.|.+|+..+-
T Consensus 41 ~~~A~~~~~~Ga~~lHvVD-----L--g~~n~~~i~~i~~~~--~~~v~vGGGIr~-e~v~~~l~aGa~rVvIGS~av~ 109 (253)
T TIGR02129 41 SYYAKLYKDDGVKGCHVIM-----L--GPNNDDAAKEALHAY--PGGLQVGGGIND-TNAQEWLDEGASHVIVTSWLFT 109 (253)
T ss_pred HHHHHHHHHcCCCEEEEEE-----C--CCCcHHHHHHHHHhC--CCCEEEeCCcCH-HHHHHHHHcCCCEEEECcHHHh
Confidence 5789999999999998743 2 444888999998877 799999999998 9999999999999999996653
|
This enzyme acts in the biosynthesis of histidine and has been characterized in S. cerevisiae and Arabidopsis where it complements the E. coli HisA gene. In eukaryotes the gene is known as HIS6. In bacteria, this gene is found in Fibrobacter succinogenes, presumably due to lateral gene transfer from plants in the rumen gut. |
| >PRK13587 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Provisional | Back alignment and domain information |
|---|
Probab=97.37 E-value=0.0011 Score=61.87 Aligned_cols=76 Identities=14% Similarity=0.163 Sum_probs=60.7
Q ss_pred CH-HHHHHHHH-cCCcEEEEcCCCCCCCCCccchHHHHHHHHHHhcCCCcEEEecCCCCHHHHHHHHHcCCCEEEechHH
Q 017718 232 TA-EDARIAVQ-AGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFIGRPV 309 (367)
Q Consensus 232 ~~-~~a~~~~~-~G~d~i~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~~~via~GGI~~~~dv~kal~lGAd~V~ig~~~ 309 (367)
++ +.|+...+ .|+|.+.+..=-+. ..+.+...+.+.++.+.+ .+||.+.|||+|-+|+.+++.+||+.|.+|+..
T Consensus 32 dp~~~a~~~~~~~Ga~~l~ivDLd~a-~~~~~~n~~~I~~i~~~~--~~pi~vGGGIrs~e~v~~~l~~Ga~kvvigt~a 108 (234)
T PRK13587 32 SAEESIAYYSQFECVNRIHIVDLIGA-KAQHAREFDYIKSLRRLT--TKDIEVGGGIRTKSQIMDYFAAGINYCIVGTKG 108 (234)
T ss_pred CHHHHHHHHHhccCCCEEEEEECccc-ccCCcchHHHHHHHHhhc--CCeEEEcCCcCCHHHHHHHHHCCCCEEEECchH
Confidence 44 66788888 69999988542211 124456788999998866 799999999999999999999999999999965
Q ss_pred H
Q 017718 310 V 310 (367)
Q Consensus 310 l 310 (367)
+
T Consensus 109 ~ 109 (234)
T PRK13587 109 I 109 (234)
T ss_pred h
Confidence 4
|
|
| >cd00429 RPE Ribulose-5-phosphate 3-epimerase (RPE) | Back alignment and domain information |
|---|
Probab=97.36 E-value=0.024 Score=51.24 Aligned_cols=77 Identities=12% Similarity=0.173 Sum_probs=50.8
Q ss_pred HHHHHHHHHcCCcEEEEcC-CCC-CCCCCccchHHHHHHHHHHhc---CCCcEEEecCCCCHHHHHHHHHcCCCEEEech
Q 017718 233 AEDARIAVQAGAAGIIVSN-HGA-RQLDYVPATIMALEEVVKATQ---GRIPVFLDGGVRRGTDVFKALALGASGIFIGR 307 (367)
Q Consensus 233 ~~~a~~~~~~G~d~i~vs~-~gg-~~~~~~~~~~~~l~~i~~~~~---~~~~via~GGI~~~~dv~kal~lGAd~V~ig~ 307 (367)
.+.++... .++|++.+.. +.| +.........+.+.++++... .++|+++.|||.. +++.+++..|||++.+||
T Consensus 118 ~~~~~~~~-~~~d~i~~~~~~~g~tg~~~~~~~~~~i~~~~~~~~~~~~~~pi~v~GGI~~-env~~~~~~gad~iivgs 195 (211)
T cd00429 118 VEVLEPYL-DEVDLVLVMSVNPGFGGQKFIPEVLEKIRKLRELIPENNLNLLIEVDGGINL-ETIPLLAEAGADVLVAGS 195 (211)
T ss_pred HHHHHHHH-hhCCEEEEEEECCCCCCcccCHHHHHHHHHHHHHHHhcCCCeEEEEECCCCH-HHHHHHHHcCCCEEEECH
Confidence 34444443 4489887643 222 222222334455566655442 1489999999996 999999999999999999
Q ss_pred HHHH
Q 017718 308 PVVY 311 (367)
Q Consensus 308 ~~l~ 311 (367)
+++-
T Consensus 196 ai~~ 199 (211)
T cd00429 196 ALFG 199 (211)
T ss_pred HHhC
Confidence 8863
|
This enzyme catalyses the interconversion of D-ribulose 5-phosphate (Ru5P) into D-xylulose 5-phosphate, as part of the Calvin cycle (reductive pentose phosphate pathway) in chloroplasts and in the oxidative pentose phosphate pathway. In the Calvin cycle Ru5P is phosphorylated by phosphoribulose kinase to ribulose-1,5-bisphosphate, which in turn is used by RubisCO (ribulose-1,5-bisphosphate carboxylase/oxygenase) to incorporate CO2 as the central step in carbohydrate synthesis. |
| >PF02581 TMP-TENI: Thiamine monophosphate synthase/TENI; InterPro: IPR003733 Thiamine monophosphate synthase (TMP) (2 | Back alignment and domain information |
|---|
Probab=97.36 E-value=0.0023 Score=57.10 Aligned_cols=78 Identities=23% Similarity=0.327 Sum_probs=57.9
Q ss_pred ecCCHHHHHHHHHcCCcEEEEcCCCCCC--CCCccchHHHHHHHHHHhcCCCcEEEecCCCCHHHHHHHHHcCCCEEEec
Q 017718 229 GVLTAEDARIAVQAGAAGIIVSNHGARQ--LDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFIG 306 (367)
Q Consensus 229 ~v~~~~~a~~~~~~G~d~i~vs~~gg~~--~~~~~~~~~~l~~i~~~~~~~~~via~GGI~~~~dv~kal~lGAd~V~ig 306 (367)
-+-+.++++.+.+.|+|++.++---.+. .+..+..++.+.++.+.. ++||++-||| +.+++.+++.+||++|.+-
T Consensus 101 S~h~~~e~~~a~~~g~dYv~~gpvf~T~sk~~~~~~g~~~l~~~~~~~--~~pv~AlGGI-~~~~i~~l~~~Ga~gvAvi 177 (180)
T PF02581_consen 101 SCHSLEEAREAEELGADYVFLGPVFPTSSKPGAPPLGLDGLREIARAS--PIPVYALGGI-TPENIPELREAGADGVAVI 177 (180)
T ss_dssp EESSHHHHHHHHHCTTSEEEEETSS--SSSSS-TTCHHHHHHHHHHHT--SSCEEEESS---TTTHHHHHHTT-SEEEES
T ss_pred ecCcHHHHHHhhhcCCCEEEECCccCCCCCccccccCHHHHHHHHHhC--CCCEEEEcCC-CHHHHHHHHHcCCCEEEEE
Confidence 4578899999999999999997522221 112334677788887776 7999999999 7899999999999999988
Q ss_pred hHH
Q 017718 307 RPV 309 (367)
Q Consensus 307 ~~~ 309 (367)
+++
T Consensus 178 ~aI 180 (180)
T PF02581_consen 178 SAI 180 (180)
T ss_dssp HHH
T ss_pred eeC
Confidence 753
|
5.1.3 from EC) catalyzes the substitution of the pyrophosphate of 2-methyl-4-amino-5- hydroxymethylpyrimidine pyrophosphate by 4-methyl-5- (beta-hydroxyethyl)thiazole phosphate to yield thiamine phosphate in the thiamine biosynthesis pathway []. TENI, a protein from Bacillus subtilis that regulates the production of several extracellular enzymes by reducing alkaline protease production belongs to this group [].; GO: 0004789 thiamine-phosphate diphosphorylase activity, 0009228 thiamine biosynthetic process; PDB: 3NL5_A 3NL2_A 3NM1_A 3NM3_C 3NL6_B 3NL3_A 3CEU_A 3O63_B 3QH2_C 1YAD_D .... |
| >PF01081 Aldolase: KDPG and KHG aldolase; InterPro: IPR000887 4-Hydroxy-2-oxoglutarate aldolase (4 | Back alignment and domain information |
|---|
Probab=97.36 E-value=0.00094 Score=60.57 Aligned_cols=167 Identities=19% Similarity=0.224 Sum_probs=95.6
Q ss_pred EEEeecCCHHHHHHHHHHHHHcCCcEEEEecCCCCCCchhHHhhhhcCCCCcccc--ccccccccCccccccchhhHHHh
Q 017718 127 FQLYVYKDRNVVAQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLTL--KNFQGLDLGKMDEANDSGLAAYV 204 (367)
Q Consensus 127 ~QLy~~~d~~~~~~~l~ra~~~G~~ai~itvd~p~~g~r~~~~~~~~~~p~~~~~--~~~~~~~~~~~~~~~~~~~~~~~ 204 (367)
+=+....+.+...++++.+.+.|++.+-||.++|-.-.--+.++..+ |. +.. ......+ ..+......++++
T Consensus 11 iaVir~~~~~~a~~~~~al~~gGi~~iEiT~~t~~a~~~I~~l~~~~--p~-~~vGAGTV~~~e---~a~~a~~aGA~Fi 84 (196)
T PF01081_consen 11 IAVIRGDDPEDAVPIAEALIEGGIRAIEITLRTPNALEAIEALRKEF--PD-LLVGAGTVLTAE---QAEAAIAAGAQFI 84 (196)
T ss_dssp EEEETTSSGGGHHHHHHHHHHTT--EEEEETTSTTHHHHHHHHHHHH--TT-SEEEEES--SHH---HHHHHHHHT-SEE
T ss_pred EEEEEcCCHHHHHHHHHHHHHCCCCEEEEecCCccHHHHHHHHHHHC--CC-CeeEEEeccCHH---HHHHHHHcCCCEE
Confidence 33444677888888888889999999999999885322223344444 32 111 0000000 0000001111111
Q ss_pred hhccCccccHH--HHHhhcCCCEEEEecCCHHHHHHHHHcCCcEEEEcCCCCCCCCCccchHHHHHHHHHHhcCCCcEEE
Q 017718 205 AGQIDRSLSWK--WLQTITKLPILVKGVLTAEDARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFL 282 (367)
Q Consensus 205 ~~~~d~~~~~~--~l~~~~~~Pv~vK~v~~~~~a~~~~~~G~d~i~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~~~via 282 (367)
. .|.++-+ ......++|++ =+++++.++..+.++|++.+-+.-.+ .-+|+. .++.++.-++ +++++.
T Consensus 85 v---SP~~~~~v~~~~~~~~i~~i-PG~~TptEi~~A~~~G~~~vK~FPA~---~~GG~~---~ik~l~~p~p-~~~~~p 153 (196)
T PF01081_consen 85 V---SPGFDPEVIEYAREYGIPYI-PGVMTPTEIMQALEAGADIVKLFPAG---ALGGPS---YIKALRGPFP-DLPFMP 153 (196)
T ss_dssp E---ESS--HHHHHHHHHHTSEEE-EEESSHHHHHHHHHTT-SEEEETTTT---TTTHHH---HHHHHHTTTT-T-EEEE
T ss_pred E---CCCCCHHHHHHHHHcCCccc-CCcCCHHHHHHHHHCCCCEEEEecch---hcCcHH---HHHHHhccCC-CCeEEE
Confidence 1 1223222 22234578885 48899999999999999999995321 112343 3444433332 799999
Q ss_pred ecCCCCHHHHHHHHHcCCCEEEechHHHH
Q 017718 283 DGGVRRGTDVFKALALGASGIFIGRPVVY 311 (367)
Q Consensus 283 ~GGI~~~~dv~kal~lGAd~V~ig~~~l~ 311 (367)
.|||.- +++...+.+|+.+|++|+.+.-
T Consensus 154 tGGV~~-~N~~~~l~ag~~~vg~Gs~L~~ 181 (196)
T PF01081_consen 154 TGGVNP-DNLAEYLKAGAVAVGGGSWLFP 181 (196)
T ss_dssp BSS--T-TTHHHHHTSTTBSEEEESGGGS
T ss_pred cCCCCH-HHHHHHHhCCCEEEEECchhcC
Confidence 999986 7899999999999999996653
|
1.3.16 from EC) (KHG-aldolase) catalyzes the interconversion of 4-hydroxy-2-oxoglutarate into pyruvate and glyoxylate. Phospho-2-dehydro-3-deoxygluconate aldolase (4.1.2.14 from EC) (KDPG-aldolase) catalyzes the interconversion of 6-phospho-2-dehydro-3-deoxy-D-gluconate into pyruvate and glyceraldehyde 3-phosphate. These two enzymes are structurally and functionally related []. They are both homotrimeric proteins of approximately 220 amino-acid residues. They are class I aldolases whose catalytic mechanism involves the formation of a Schiff-base intermediate between the substrate and the epsilon-amino group of a lysine residue. In both enzymes, an arginine is required for catalytic activity.; GO: 0003824 catalytic activity, 0008152 metabolic process; PDB: 3VCR_A 1FQ0_A 1EUN_A 1EUA_B 1FWR_A 2C0A_B 1WBH_A 1WAU_A 2YW3_B 2YW4_A .... |
| >COG0352 ThiE Thiamine monophosphate synthase [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=97.32 E-value=0.007 Score=55.54 Aligned_cols=95 Identities=20% Similarity=0.192 Sum_probs=70.0
Q ss_pred HHHHHhhcCCCEEEEec-CCHHHHHHHHHcCCcEEEEcCCCCCCC--CCccchHHHHHHHHHHhcCCCcEEEecCCCCHH
Q 017718 214 WKWLQTITKLPILVKGV-LTAEDARIAVQAGAAGIIVSNHGARQL--DYVPATIMALEEVVKATQGRIPVFLDGGVRRGT 290 (367)
Q Consensus 214 ~~~l~~~~~~Pv~vK~v-~~~~~a~~~~~~G~d~i~vs~~gg~~~--~~~~~~~~~l~~i~~~~~~~~~via~GGI~~~~ 290 (367)
....++..+-..++..+ .+.+++..+.+.|+|+|.++.-..+.- +..+.-++.+.++.+.. ++|+++-||| +.+
T Consensus 94 ~~~ar~~~~~~~iIG~S~h~~eea~~A~~~g~DYv~~GpifpT~tK~~~~~~G~~~l~~~~~~~--~iP~vAIGGi-~~~ 170 (211)
T COG0352 94 LAEARELLGPGLIIGLSTHDLEEALEAEELGADYVGLGPIFPTSTKPDAPPLGLEGLREIRELV--NIPVVAIGGI-NLE 170 (211)
T ss_pred hHHHHHhcCCCCEEEeecCCHHHHHHHHhcCCCEEEECCcCCCCCCCCCCccCHHHHHHHHHhC--CCCEEEEcCC-CHH
Confidence 33555555544445443 578999999999999999854333322 22334567788777765 6999999998 468
Q ss_pred HHHHHHHcCCCEEEechHHHH
Q 017718 291 DVFKALALGASGIFIGRPVVY 311 (367)
Q Consensus 291 dv~kal~lGAd~V~ig~~~l~ 311 (367)
.+...+..||++|.+-|+++.
T Consensus 171 nv~~v~~~Ga~gVAvvsai~~ 191 (211)
T COG0352 171 NVPEVLEAGADGVAVVSAITS 191 (211)
T ss_pred HHHHHHHhCCCeEEehhHhhc
Confidence 899999999999999998875
|
|
| >TIGR01919 hisA-trpF 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase/N-(5'phosphoribosyl)anthranilate isomerase | Back alignment and domain information |
|---|
Probab=97.30 E-value=0.0013 Score=61.70 Aligned_cols=73 Identities=19% Similarity=0.116 Sum_probs=57.1
Q ss_pred HHHHHHHHcCCcEEEEcCC--CCCCCCCccchHHHHHHHHHHhcCCCcEEEecCCCCHHHHHHHH---HcCCCEEEechH
Q 017718 234 EDARIAVQAGAAGIIVSNH--GARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKAL---ALGASGIFIGRP 308 (367)
Q Consensus 234 ~~a~~~~~~G~d~i~vs~~--gg~~~~~~~~~~~~l~~i~~~~~~~~~via~GGI~~~~dv~kal---~lGAd~V~ig~~ 308 (367)
+.++.+.+.|+..|++.+- -|+ ..| +.++.+.++++.. ++|||++|||++.+|+.+.- ..|+++|.+|++
T Consensus 153 ~~~~~~~~~g~~~ii~tdI~~dGt--~~G-~d~~l~~~l~~~~--~~pviasGGv~s~eDl~~l~~l~~~Gv~gvivg~A 227 (243)
T TIGR01919 153 VLERLLDSGGCSRVVVTDSKKDGL--SGG-PNELLLEVVAART--DAIVAASGGSSLLDDLRAIKYLDEGGVSVAIGGKL 227 (243)
T ss_pred HHHHHHHhCCCCEEEEEecCCccc--CCC-cCHHHHHHHHhhC--CCCEEEECCcCCHHHHHHHHhhccCCeeEEEEhHH
Confidence 5578889999999998652 121 122 5677888887765 79999999999999999864 359999999998
Q ss_pred HHH
Q 017718 309 VVY 311 (367)
Q Consensus 309 ~l~ 311 (367)
+.-
T Consensus 228 l~~ 230 (243)
T TIGR01919 228 LYA 230 (243)
T ss_pred HHc
Confidence 764
|
This model represents a bifunctional protein posessing both hisA (1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase) and trpF (N-(5'phosphoribosyl)anthranilate isomerase) activities. Thus, it is involved in both the histidine and tryptophan biosynthetic pathways. Enzymes with this property have been described only in the Actinobacteria (High-GC gram-positive). The enzyme is closely related to the monofunctional HisA proteins (TIGR00007) and in Actinobacteria, the classical monofunctional TrpF is generally absent. |
| >PRK12376 putative translaldolase; Provisional | Back alignment and domain information |
|---|
Probab=97.30 E-value=0.055 Score=50.51 Aligned_cols=176 Identities=16% Similarity=0.170 Sum_probs=108.8
Q ss_pred hhHHHHHHHHHcCCceeecCCCC-------CCHH----HHHhhCC-CceEEEEeecCCHHHHHHHHHHHHHcCCcEEEEe
Q 017718 89 GEYATARAASAAGTIMTLSSWST-------SSVE----EVASTGP-GIRFFQLYVYKDRNVVAQLVRRAERAGFKAIALT 156 (367)
Q Consensus 89 ~e~~~a~aa~~~G~~~~vs~~~~-------~~~e----~i~~~~~-~~~~~QLy~~~d~~~~~~~l~ra~~~G~~ai~it 156 (367)
.|+.-.+.+.+.|..-.++|..+ ...+ ++++..+ ++..+|++ ..|.+.+.+..++..+.+-. ++|-
T Consensus 13 Ad~~eik~~~~~g~i~GVTTNPsll~k~g~~~~~~~~~~i~~~~~~~~vs~EV~-~~d~~~mv~eA~~l~~~~~n-v~VK 90 (236)
T PRK12376 13 ADLEEMLAAYKNPLVKGFTTNPSLMRKAGVTDYKAFAKEVLAEIPDAPISFEVF-ADDLETMEKEAEKIASLGEN-VYVK 90 (236)
T ss_pred CCHHHHHHHHhCCCeeEEECCHHHHHhcCCCCHHHHHHHHHHhcCCCcEEEEEe-cCCHHHHHHHHHHHHHhCCC-eEEE
Confidence 46777888888888877876532 1333 3344444 57888986 56666554444554444432 3332
Q ss_pred cCCCCCCchhHHhhhhcCCCCccccccccccccCccccccc-hhhHHHhhhccCccccHHHHHhhcCCCEEEEecCCHHH
Q 017718 157 VDTPRLGRREADIKNRFTLPPFLTLKNFQGLDLGKMDEAND-SGLAAYVAGQIDRSLSWKWLQTITKLPILVKGVLTAED 235 (367)
Q Consensus 157 vd~p~~g~r~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~d~~~~~~~l~~~~~~Pv~vK~v~~~~~ 235 (367)
+- +. .. .+ .++ . ..+.|++ -++|+-+-.+.+...
T Consensus 91 IP--~T------------------~~-------------~G~~gl-~----------Ai~~L~~-~GI~vn~T~vfs~~Q 125 (236)
T PRK12376 91 IP--IT------------------NT-------------KGESTI-P----------LIKKLSA-DGVKLNVTAIFTIEQ 125 (236)
T ss_pred EC--Cc------------------Cc-------------cchhHH-H----------HHHHHHH-CCCeEEEeeecCHHH
Confidence 21 10 00 00 000 0 1123333 389999999999998
Q ss_pred HHHHHHc----CCcEEEEcCCCCCCCCCccchHHHHHHHHHHhc--CCCcEEEecCCCCHHHHHHHHHcCCCEEEechHH
Q 017718 236 ARIAVQA----GAAGIIVSNHGARQLDYVPATIMALEEVVKATQ--GRIPVFLDGGVRRGTDVFKALALGASGIFIGRPV 309 (367)
Q Consensus 236 a~~~~~~----G~d~i~vs~~gg~~~~~~~~~~~~l~~i~~~~~--~~~~via~GGI~~~~dv~kal~lGAd~V~ig~~~ 309 (367)
+..+.++ |+++|.. .=||--|.+......+.++.+.+. .++.|++.+ ||+..++.+++.+|||.+-+.-.+
T Consensus 126 a~~a~~A~ag~ga~yisp--fvgR~dd~g~D~~~~i~~i~~i~~~~~~tkILaAS-iR~~~~v~~a~~~Gad~vTvp~~v 202 (236)
T PRK12376 126 VKEVVDALTPGVPAIVSV--FAGRIADTGVDPVPLMKEALAICHSKPGVELLWAS-PREVYNIIQADQLGCDIITVTPDV 202 (236)
T ss_pred HHHHHHHhcCCCCeEEEE--ecchhhhcCCCcHHHHHHHHHHHHhCCCcEEEEEe-cCCHHHHHHHHHcCCCEEEcCHHH
Confidence 8755555 5888776 334433555555666666655442 256777766 999999999999999999999888
Q ss_pred HHHhh
Q 017718 310 VYSLA 314 (367)
Q Consensus 310 l~~l~ 314 (367)
+..+.
T Consensus 203 ~~~l~ 207 (236)
T PRK12376 203 LKKLP 207 (236)
T ss_pred HHHHH
Confidence 77654
|
|
| >PRK01033 imidazole glycerol phosphate synthase subunit HisF; Provisional | Back alignment and domain information |
|---|
Probab=97.30 E-value=0.0027 Score=60.11 Aligned_cols=75 Identities=17% Similarity=0.241 Sum_probs=60.6
Q ss_pred HHHHHHHHHcCCcEEEEcCCCCCCCCCccchHHHHHHHHHHhcCCCcEEEecCCCCHHHHHHHHHcCCCEEEechHHH
Q 017718 233 AEDARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFIGRPVV 310 (367)
Q Consensus 233 ~~~a~~~~~~G~d~i~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~~~via~GGI~~~~dv~kal~lGAd~V~ig~~~l 310 (367)
.+.|+...+.|++.|.+..-.+. .....+..+.+.++.+.. .+||+++|||++.+|+.+++.+||+.|.+|+..+
T Consensus 33 ~~~a~~~~~~g~~~l~i~Dl~~~-~~~~~~n~~~i~~i~~~~--~~pv~~gGGi~s~~d~~~l~~~G~~~vvigs~~~ 107 (258)
T PRK01033 33 INAVRIFNEKEVDELIVLDIDAS-KRGSEPNYELIENLASEC--FMPLCYGGGIKTLEQAKKIFSLGVEKVSINTAAL 107 (258)
T ss_pred HHHHHHHHHcCCCEEEEEECCCC-cCCCcccHHHHHHHHHhC--CCCEEECCCCCCHHHHHHHHHCCCCEEEEChHHh
Confidence 35689999999999998653221 112346788898888765 7999999999999999999999999999998654
|
|
| >PRK12290 thiE thiamine-phosphate pyrophosphorylase; Reviewed | Back alignment and domain information |
|---|
Probab=97.30 E-value=0.021 Score=57.62 Aligned_cols=95 Identities=16% Similarity=0.099 Sum_probs=65.6
Q ss_pred HHHhhcCCCEEEEec-CCHHHHHHHHHcCCcEEEEcCCCCCC-C--CCccchHHHHHHHHHHhc-------CCCcEEEec
Q 017718 216 WLQTITKLPILVKGV-LTAEDARIAVQAGAAGIIVSNHGARQ-L--DYVPATIMALEEVVKATQ-------GRIPVFLDG 284 (367)
Q Consensus 216 ~l~~~~~~Pv~vK~v-~~~~~a~~~~~~G~d~i~vs~~gg~~-~--~~~~~~~~~l~~i~~~~~-------~~~~via~G 284 (367)
.+|+..+--.++..+ -+.+++.++.+.|+|+|.++----+. . ...+--++.|.++.+.+. ..+||++-|
T Consensus 292 ~aR~ilg~~~iIGvStHs~eEl~~A~~~gaDYI~lGPIFpT~TK~~~~~p~Gl~~L~~~~~l~~~~~~~~~~~iPVVAIG 371 (437)
T PRK12290 292 NLAQLTDAGIRLGLSTHGYYELLRIVQIQPSYIALGHIFPTTTKQMPSKPQGLVRLALYQKLIDTIPYQGQTGFPTVAIG 371 (437)
T ss_pred hhhhhcCCCCEEEEecCCHHHHHHHhhcCCCEEEECCccCCCCCCCCCCCCCHHHHHHHHHHhhhccccccCCCCEEEEC
Confidence 444443322344443 56889999999999999985311111 1 122334566666655442 269999999
Q ss_pred CCCCHHHHHHHHHcCCCEEEechHHHH
Q 017718 285 GVRRGTDVFKALALGASGIFIGRPVVY 311 (367)
Q Consensus 285 GI~~~~dv~kal~lGAd~V~ig~~~l~ 311 (367)
|| +.+++...+..||++|.+-|.++-
T Consensus 372 GI-~~~Ni~~vl~aGa~GVAVVSAI~~ 397 (437)
T PRK12290 372 GI-DQSNAEQVWQCGVSSLAVVRAITL 397 (437)
T ss_pred Cc-CHHHHHHHHHcCCCEEEEehHhhc
Confidence 99 889999999999999999998873
|
|
| >COG0269 SgbH 3-hexulose-6-phosphate synthase and related proteins [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=97.29 E-value=0.0056 Score=55.87 Aligned_cols=196 Identities=18% Similarity=0.223 Sum_probs=108.4
Q ss_pred eEEEEeecCCHHHHHHHHHHHHHcCCcEEEEecCCCC---CCchh-HHhhhhcCCCCccccccccccccCccc-cccchh
Q 017718 125 RFFQLYVYKDRNVVAQLVRRAERAGFKAIALTVDTPR---LGRRE-ADIKNRFTLPPFLTLKNFQGLDLGKMD-EANDSG 199 (367)
Q Consensus 125 ~~~QLy~~~d~~~~~~~l~ra~~~G~~ai~itvd~p~---~g~r~-~~~~~~~~~p~~~~~~~~~~~~~~~~~-~~~~~~ 199 (367)
...|+-. |.-.+++.++-+++..-...+|-+++|. .|.|- +.+|..| |.+.....+.-...+... +....+
T Consensus 4 p~LQvAL--D~~~l~~Ai~~a~~v~~~~diiEvGTpLik~eG~~aV~~lr~~~--pd~~IvAD~Kt~D~G~~e~~ma~~a 79 (217)
T COG0269 4 PLLQVAL--DLLDLEEAIEIAEEVADYVDIIEVGTPLIKAEGMRAVRALRELF--PDKIIVADLKTADAGAIEARMAFEA 79 (217)
T ss_pred cceEeee--cccCHHHHHHHHHHhhhcceEEEeCcHHHHHhhHHHHHHHHHHC--CCCeEEeeeeecchhHHHHHHHHHc
Confidence 4678754 4444566677777765557888999997 23222 4455544 554443322111100000 000000
Q ss_pred hHHHhhhcc-CccccHH-HHH--hhcCCCEEEEec--CCHHHHHH-HHHcCCcEEEEcCCCCCC--CCCccchHHHHHHH
Q 017718 200 LAAYVAGQI-DRSLSWK-WLQ--TITKLPILVKGV--LTAEDARI-AVQAGAAGIIVSNHGARQ--LDYVPATIMALEEV 270 (367)
Q Consensus 200 ~~~~~~~~~-d~~~~~~-~l~--~~~~~Pv~vK~v--~~~~~a~~-~~~~G~d~i~vs~~gg~~--~~~~~~~~~~l~~i 270 (367)
.+.++.-.. -+.-+.+ .++ +.+++-+.+=+. -++++... +.++|+|.+.+ |-|+. ..+-.+.++.|.++
T Consensus 80 GAd~~tV~g~A~~~TI~~~i~~A~~~~~~v~iDl~~~~~~~~~~~~l~~~gvd~~~~--H~g~D~q~~G~~~~~~~l~~i 157 (217)
T COG0269 80 GADWVTVLGAADDATIKKAIKVAKEYGKEVQIDLIGVWDPEQRAKWLKELGVDQVIL--HRGRDAQAAGKSWGEDDLEKI 157 (217)
T ss_pred CCCEEEEEecCCHHHHHHHHHHHHHcCCeEEEEeecCCCHHHHHHHHHHhCCCEEEE--EecccHhhcCCCccHHHHHHH
Confidence 000000000 0111333 232 345666666554 45666554 44599999999 66653 22333346777777
Q ss_pred HHHhcCCCcEEEecCCCCHHHHHHHHHcCCCEEEechHHHHHhhccChHHHHHHHHHHHHHHH
Q 017718 271 VKATQGRIPVFLDGGVRRGTDVFKALALGASGIFIGRPVVYSLAAEGEKGVRRVLEMLREEFE 333 (367)
Q Consensus 271 ~~~~~~~~~via~GGI~~~~dv~kal~lGAd~V~ig~~~l~~l~~~G~~~v~~~i~~l~~el~ 333 (367)
++.....+.|-..||| +++++-.+...|++.|.+||.+. +........+.+++++.
T Consensus 158 k~~~~~g~~vAVaGGI-~~~~i~~~~~~~~~ivIvGraIt------~a~dp~~~a~~~~~~i~ 213 (217)
T COG0269 158 KKLSDLGAKVAVAGGI-TPEDIPLFKGIGADIVIVGRAIT------GAKDPAEAARKFKEEID 213 (217)
T ss_pred HHhhccCceEEEecCC-CHHHHHHHhcCCCCEEEECchhc------CCCCHHHHHHHHHHHHh
Confidence 7765434788889998 57999999999999999999775 33333345556666553
|
|
| >COG0274 DeoC Deoxyribose-phosphate aldolase [Nucleotide transport and metabolism] | Back alignment and domain information |
|---|
Probab=97.27 E-value=0.0015 Score=59.90 Aligned_cols=88 Identities=26% Similarity=0.320 Sum_probs=64.2
Q ss_pred HHHhhcCCCEEEEec-----CCHH----HHHHHHHcCCcEEEEcCCCCCCCCCccchHHHHHHHHHHhcCCCcEEEecCC
Q 017718 216 WLQTITKLPILVKGV-----LTAE----DARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGV 286 (367)
Q Consensus 216 ~l~~~~~~Pv~vK~v-----~~~~----~a~~~~~~G~d~i~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~~~via~GGI 286 (367)
.+++..+-++.+|.+ ++.+ ..+.+.++|+|+|--|. | +..+..+.+-+.-+++.+++++.|=++|||
T Consensus 117 ~v~~a~~~~~~lKVIlEt~~Lt~ee~~~A~~i~~~aGAdFVKTST-G---f~~~gAT~edv~lM~~~vg~~vgvKaSGGI 192 (228)
T COG0274 117 AVVEACADAVVLKVILETGLLTDEEKRKACEIAIEAGADFVKTST-G---FSAGGATVEDVKLMKETVGGRVGVKASGGI 192 (228)
T ss_pred HHHHHhCCCceEEEEEeccccCHHHHHHHHHHHHHhCCCEEEcCC-C---CCCCCCCHHHHHHHHHHhccCceeeccCCc
Confidence 455555555778887 2322 25678999999999873 3 224455666666666667778999999999
Q ss_pred CCHHHHHHHHHcCCCEEEech
Q 017718 287 RRGTDVFKALALGASGIFIGR 307 (367)
Q Consensus 287 ~~~~dv~kal~lGAd~V~ig~ 307 (367)
+|.+|+.+++.+||.-++..+
T Consensus 193 rt~eda~~~i~aga~RiGtSs 213 (228)
T COG0274 193 RTAEDAKAMIEAGATRIGTSS 213 (228)
T ss_pred CCHHHHHHHHHHhHHHhcccc
Confidence 999999999999976665443
|
|
| >PTZ00170 D-ribulose-5-phosphate 3-epimerase; Provisional | Back alignment and domain information |
|---|
Probab=97.26 E-value=0.011 Score=54.84 Aligned_cols=112 Identities=20% Similarity=0.195 Sum_probs=69.3
Q ss_pred HHHHhhc-CCCEEEEec-CCHH-HHHHHHHcCCcEEEEcCCCCCC-C---------------------------------
Q 017718 215 KWLQTIT-KLPILVKGV-LTAE-DARIAVQAGAAGIIVSNHGARQ-L--------------------------------- 257 (367)
Q Consensus 215 ~~l~~~~-~~Pv~vK~v-~~~~-~a~~~~~~G~d~i~vs~~gg~~-~--------------------------------- 257 (367)
+++|+.+ ++|+-+|.- .+++ .++.+.++|+|.|.++..++.. +
T Consensus 57 ~~lr~~~~~~~lDvHLm~~~p~~~i~~~~~~Gad~itvH~ea~~~~~~~~l~~ik~~G~~~gval~p~t~~e~l~~~l~~ 136 (228)
T PTZ00170 57 KSLRKHLPNTFLDCHLMVSNPEKWVDDFAKAGASQFTFHIEATEDDPKAVARKIREAGMKVGVAIKPKTPVEVLFPLIDT 136 (228)
T ss_pred HHHHhcCCCCCEEEEECCCCHHHHHHHHHHcCCCEEEEeccCCchHHHHHHHHHHHCCCeEEEEECCCCCHHHHHHHHcc
Confidence 4777766 788888875 4443 3667788888888885422210 0
Q ss_pred ---------------CC---ccchHHHHHHHHHHhcCCCcEEEecCCCCHHHHHHHHHcCCCEEEechHHHHHhhccChH
Q 017718 258 ---------------DY---VPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFIGRPVVYSLAAEGEK 319 (367)
Q Consensus 258 ---------------~~---~~~~~~~l~~i~~~~~~~~~via~GGI~~~~dv~kal~lGAd~V~ig~~~l~~l~~~G~~ 319 (367)
++ .+..++-+.++++..+ .+.|.++|||+. +.+.++..+|||.+.+||++.. . +
T Consensus 137 ~~vD~Vl~m~v~pG~~gq~~~~~~~~ki~~~~~~~~-~~~I~VdGGI~~-~ti~~~~~aGad~iVvGsaI~~---a---~ 208 (228)
T PTZ00170 137 DLVDMVLVMTVEPGFGGQSFMHDMMPKVRELRKRYP-HLNIQVDGGINL-ETIDIAADAGANVIVAGSSIFK---A---K 208 (228)
T ss_pred chhhhHHhhhcccCCCCcEecHHHHHHHHHHHHhcc-cCeEEECCCCCH-HHHHHHHHcCCCEEEEchHHhC---C---C
Confidence 00 0112333444444332 478999999976 5788888999999999998542 1 1
Q ss_pred HHHHHHHHHHHHHHH
Q 017718 320 GVRRVLEMLREEFEL 334 (367)
Q Consensus 320 ~v~~~i~~l~~el~~ 334 (367)
...+.++.++++++.
T Consensus 209 d~~~~~~~i~~~~~~ 223 (228)
T PTZ00170 209 DRKQAIELLRESVQK 223 (228)
T ss_pred CHHHHHHHHHHHHHH
Confidence 233455666665554
|
|
| >PRK06801 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=97.24 E-value=0.047 Score=52.47 Aligned_cols=107 Identities=21% Similarity=0.260 Sum_probs=75.1
Q ss_pred CCHHHHHHHH-HcCCcEEEEcC---CCCCCCCCc-cchHHHHHHHHHHhcCCCcEEEecC--CCCHHHHHHHHHcCCCEE
Q 017718 231 LTAEDARIAV-QAGAAGIIVSN---HGARQLDYV-PATIMALEEVVKATQGRIPVFLDGG--VRRGTDVFKALALGASGI 303 (367)
Q Consensus 231 ~~~~~a~~~~-~~G~d~i~vs~---~gg~~~~~~-~~~~~~l~~i~~~~~~~~~via~GG--I~~~~dv~kal~lGAd~V 303 (367)
.++++|+.+. +.|+|++-++. ||-+ ++. ...++.|.++++.+ ++|+.+-|| |. .+++.+++.+|++.|
T Consensus 156 T~pe~a~~f~~~tgvD~LAvaiGt~Hg~y--~~~~~l~~e~l~~i~~~~--~~PLVlHGGSgi~-~e~~~~~i~~Gi~KI 230 (286)
T PRK06801 156 TDPQLARDFVDRTGIDALAVAIGNAHGKY--KGEPKLDFARLAAIHQQT--GLPLVLHGGSGIS-DADFRRAIELGIHKI 230 (286)
T ss_pred CCHHHHHHHHHHHCcCEEEeccCCCCCCC--CCCCCCCHHHHHHHHHhc--CCCEEEECCCCCC-HHHHHHHHHcCCcEE
Confidence 4678888877 89999999953 3322 122 24788899998877 799999998 76 578999999999999
Q ss_pred EechHHHHHhhc-------cCh-------HHHHHHHHHHHHHHHHHHHHhCCC
Q 017718 304 FIGRPVVYSLAA-------EGE-------KGVRRVLEMLREEFELAMALSGCR 342 (367)
Q Consensus 304 ~ig~~~l~~l~~-------~G~-------~~v~~~i~~l~~el~~~m~~~G~~ 342 (367)
-++|.+..+... ..+ .-.....+.+++.++..|+.+|..
T Consensus 231 Nv~T~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~gs~ 283 (286)
T PRK06801 231 NFYTGMSQAALAAVEQRMTHRHAIYDEFAELLLGIEEAISDTVAQQMRIFGSA 283 (286)
T ss_pred EehhHHHHHHHHHHHHHHHhCCcccCCHHHHHHHHHHHHHHHHHHHHHHhCCC
Confidence 999987654210 111 112233455667777777777753
|
|
| >PRK04302 triosephosphate isomerase; Provisional | Back alignment and domain information |
|---|
Probab=97.19 E-value=0.0033 Score=58.08 Aligned_cols=89 Identities=28% Similarity=0.353 Sum_probs=60.3
Q ss_pred cCCCEEEEecCCHHHHHHHHHcCCcEEEEcCC--CCCC--CCCc-cchH-HHHHHHHHHhcCCCcEEEecCCCCHHHHHH
Q 017718 221 TKLPILVKGVLTAEDARIAVQAGAAGIIVSNH--GARQ--LDYV-PATI-MALEEVVKATQGRIPVFLDGGVRRGTDVFK 294 (367)
Q Consensus 221 ~~~Pv~vK~v~~~~~a~~~~~~G~d~i~vs~~--gg~~--~~~~-~~~~-~~l~~i~~~~~~~~~via~GGI~~~~dv~k 294 (367)
.++.+++ .+.+.+.++.+.+.|.|.|.+-+. -|+. .... +... +.+..+++. ..++||++.|||++++++..
T Consensus 113 ~Gl~~I~-~v~~~~~~~~~~~~~~~~I~~~p~~~igt~~~~~~~~~~~i~~~~~~ir~~-~~~~pvi~GggI~~~e~~~~ 190 (223)
T PRK04302 113 LGLESVV-CVNNPETSAAAAALGPDYVAVEPPELIGTGIPVSKAKPEVVEDAVEAVKKV-NPDVKVLCGAGISTGEDVKA 190 (223)
T ss_pred CCCeEEE-EcCCHHHHHHHhcCCCCEEEEeCccccccCCCCCcCCHHHHHHHHHHHHhc-cCCCEEEEECCCCCHHHHHH
Confidence 4665544 456678888888999998876432 1221 1111 1122 223333332 23689999999999999999
Q ss_pred HHHcCCCEEEechHHHH
Q 017718 295 ALALGASGIFIGRPVVY 311 (367)
Q Consensus 295 al~lGAd~V~ig~~~l~ 311 (367)
++..|||+|.+|++++.
T Consensus 191 ~~~~gadGvlVGsa~l~ 207 (223)
T PRK04302 191 ALELGADGVLLASGVVK 207 (223)
T ss_pred HHcCCCCEEEEehHHhC
Confidence 99999999999999985
|
|
| >cd04723 HisA_HisF Phosphoribosylformimino-5-aminoimidazole carboxamide ribonucleotide (ProFAR) isomerase (HisA) and the cyclase subunit of imidazoleglycerol phosphate synthase (HisF) | Back alignment and domain information |
|---|
Probab=97.16 E-value=0.0021 Score=59.85 Aligned_cols=74 Identities=23% Similarity=0.291 Sum_probs=60.7
Q ss_pred HHHHHHHHHcCCcEEEEcCCCCCCCCCccchHHHHHHHHHHhcCCCcEEEecCCCCHHHHHHHHHcCCCEEEechHHH
Q 017718 233 AEDARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFIGRPVV 310 (367)
Q Consensus 233 ~~~a~~~~~~G~d~i~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~~~via~GGI~~~~dv~kal~lGAd~V~ig~~~l 310 (367)
.+.|+...+.|+|.+.+..=-+. .+.....+.+.++.+.+ .+|+.+.|||++.+|+.+++.+||+-|.+|+..+
T Consensus 38 ~~~a~~~~~~g~~~l~i~DLd~~--~~~~~n~~~i~~i~~~~--~~~v~vgGGir~~edv~~~l~~Ga~~viigt~~~ 111 (233)
T cd04723 38 LDVARAYKELGFRGLYIADLDAI--MGRGDNDEAIRELAAAW--PLGLWVDGGIRSLENAQEWLKRGASRVIVGTETL 111 (233)
T ss_pred HHHHHHHHHCCCCEEEEEeCccc--cCCCccHHHHHHHHHhC--CCCEEEecCcCCHHHHHHHHHcCCCeEEEcceec
Confidence 46689999999999998642221 14456788888888776 6899999999999999999999999999999654
|
The ProFAR isomerase catalyzes the fourth step in histidine biosynthesis, an isomerisation of the aminoaldose moiety of ProFAR to the aminoketose of PRFAR (N-(5'-phospho-D-1'-ribulosylformimino)-5-amino-1-(5''-phospho-ribosyl)-4-imidazolecarboxamide). In bacteria and archaea, ProFAR isomerase is encoded by the HisA gene. The Imidazole glycerol phosphate synthase (IGPS) catalyzes the fifth step of histidine biosynthesis, the formation of the imidazole ring. IGPS converts N1-(5'-phosphoribulosyl)-formimino-5-aminoimidazole-4-carboxamide ribonucleotide (PRFAR) to imidazole glycerol phosphate (ImGP) and 5'-(5-aminoimidazole-4-carboxamide) ribonucleotide (AICAR). This conversion involves two tightly coupled reactions in distinct active sites of IGPS. The two catalytic domains can be fused, like in fungi and pl |
| >PF00977 His_biosynth: Histidine biosynthesis protein; InterPro: IPR006062 Histidine is formed by several complex and distinct biochemical reactions catalysed by eight enzymes | Back alignment and domain information |
|---|
Probab=97.16 E-value=0.0023 Score=59.45 Aligned_cols=75 Identities=25% Similarity=0.360 Sum_probs=58.2
Q ss_pred HHHHHHHHcCCcEEEEcCCCCCCCCCccchHHHHHHHHHHhcCCCcEEEecCCCCHHHHHHHHHcCCCEEEechHHHH
Q 017718 234 EDARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFIGRPVVY 311 (367)
Q Consensus 234 ~~a~~~~~~G~d~i~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~~~via~GGI~~~~dv~kal~lGAd~V~ig~~~l~ 311 (367)
+.|+...+.|++.+.+-.=-+ ...+.+...+.+.++.+.+ .+||.+.|||++.+|+.+++.+||+.|.+|+..+.
T Consensus 33 ~~a~~~~~~g~~~l~ivDLda-a~~g~~~n~~~i~~i~~~~--~~~i~vgGGIrs~ed~~~ll~~Ga~~Vvigt~~~~ 107 (229)
T PF00977_consen 33 EVAKAFNEQGADELHIVDLDA-AKEGRGSNLELIKEIAKET--GIPIQVGGGIRSIEDAERLLDAGADRVVIGTEALE 107 (229)
T ss_dssp HHHHHHHHTT-SEEEEEEHHH-HCCTHHHHHHHHHHHHHHS--SSEEEEESSE-SHHHHHHHHHTT-SEEEESHHHHH
T ss_pred HHHHHHHHcCCCEEEEEEccC-cccCchhHHHHHHHHHhcC--CccEEEeCccCcHHHHHHHHHhCCCEEEeChHHhh
Confidence 668888899999998853111 1234456788899998877 69999999999999999999999999999997664
|
Proteins involved in steps 4 and 6 of the histidine biosynthesis pathway are contained in one family. These enzymes are called His6 and His7 in eukaryotes and HisA and HisF in prokaryotes. HisA is a phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase (5.3.1.16 from EC), involved in the fourth step of histidine biosynthesis. The bacterial HisF protein is a cyclase which catalyzes the cyclization reaction that produces D-erythro-imidazole glycerol phosphate during the sixth step of histidine biosynthesis. The yeast His7 protein is a bifunctional protein which catalyzes an amido-transferase reaction that generates imidazole-glycerol phosphate and 5-aminoimidazol-4-carboxamide. The latter is the ribonucleotide used for purine biosynthesis. The enzyme also catalyzes the cyclization reaction that produces D-erythro-imidazole glycerol phosphate, and is involved in the fifth and sixth steps in histidine biosynthesis.; GO: 0000105 histidine biosynthetic process; PDB: 2VEP_A 2X30_A 1VZW_A 2WJZ_A 2LLE_A 2A0N_A 1THF_D 1GPW_E 1VH7_A 1KA9_F .... |
| >PRK06559 nicotinate-nucleotide pyrophosphorylase; Provisional | Back alignment and domain information |
|---|
Probab=97.13 E-value=0.018 Score=55.17 Aligned_cols=83 Identities=19% Similarity=0.180 Sum_probs=63.7
Q ss_pred HHHhhcC--CCEEEEecCCHHHHHHHHHcCCcEEEEcCCCCCCCCCccchHHHHHHHHHHhcCCCcEEEecCCCCHHHHH
Q 017718 216 WLQTITK--LPILVKGVLTAEDARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVF 293 (367)
Q Consensus 216 ~l~~~~~--~Pv~vK~v~~~~~a~~~~~~G~d~i~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~~~via~GGI~~~~dv~ 293 (367)
.+|+..+ .+|.| .+.+.++++.+.++|+|.|.+.| -+.+.+.++.+.+++++.+.++||| +.+.+.
T Consensus 189 ~~r~~~~~~~kIeV-Ev~tleea~~a~~agaDiImLDn----------mspe~l~~av~~~~~~~~leaSGGI-~~~ni~ 256 (290)
T PRK06559 189 QARAYAPFVKMVEV-EVESLAAAEEAAAAGADIIMLDN----------MSLEQIEQAITLIAGRSRIECSGNI-DMTTIS 256 (290)
T ss_pred HHHHhCCCCCeEEE-ECCCHHHHHHHHHcCCCEEEECC----------CCHHHHHHHHHHhcCceEEEEECCC-CHHHHH
Confidence 5555443 34443 56899999999999999999987 2445556666655568899999998 568888
Q ss_pred HHHHcCCCEEEechHHH
Q 017718 294 KALALGASGIFIGRPVV 310 (367)
Q Consensus 294 kal~lGAd~V~ig~~~l 310 (367)
++..+|.|.+.+|.+..
T Consensus 257 ~yA~tGVD~Is~galth 273 (290)
T PRK06559 257 RFRGLAIDYVSSGSLTH 273 (290)
T ss_pred HHHhcCCCEEEeCcccc
Confidence 89899999999998654
|
|
| >PRK04169 geranylgeranylglyceryl phosphate synthase-like protein; Reviewed | Back alignment and domain information |
|---|
Probab=97.13 E-value=0.0029 Score=58.86 Aligned_cols=66 Identities=24% Similarity=0.331 Sum_probs=51.6
Q ss_pred HcCCcEEEEcCCCCCCCCCccchHHHHHHHHHHhcCCC-cEEEecCCCCHHHHHHHHHcCCCEEEechHHHH
Q 017718 241 QAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRI-PVFLDGGVRRGTDVFKALALGASGIFIGRPVVY 311 (367)
Q Consensus 241 ~~G~d~i~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~~-~via~GGI~~~~dv~kal~lGAd~V~ig~~~l~ 311 (367)
-.|...+.+...++ .+.+...+.+.++++.+ +. ||+..|||++.+++.+++..|||.|.+|+.+.-
T Consensus 152 ~~g~~~vYle~gs~---~g~~~~~e~I~~v~~~~--~~~pvivGGGIrs~e~a~~~l~~GAD~VVVGSai~~ 218 (232)
T PRK04169 152 YLGMPIVYLEYGGG---AGDPVPPEMVKAVKKAL--DITPLIYGGGIRSPEQARELMAAGADTIVVGNIIEE 218 (232)
T ss_pred HcCCCeEEEECCCC---CCCCCCHHHHHHHHHhc--CCCcEEEECCCCCHHHHHHHHHhCCCEEEEChHHhh
Confidence 34666666643222 24456788888888876 56 999999999999999999999999999998864
|
|
| >PRK05718 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional | Back alignment and domain information |
|---|
Probab=97.12 E-value=0.017 Score=53.16 Aligned_cols=118 Identities=19% Similarity=0.247 Sum_probs=85.1
Q ss_pred eEEEEeecCCHHHHHHHHHHHHHcCCcEEEEecCCCCCCchhHHhhhhcCCCCccccccccccccCccccccchhhHHHh
Q 017718 125 RFFQLYVYKDRNVVAQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLTLKNFQGLDLGKMDEANDSGLAAYV 204 (367)
Q Consensus 125 ~~~QLy~~~d~~~~~~~l~ra~~~G~~ai~itvd~p~~g~r~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 204 (367)
..+-+....+.+...++++.+.+.|++.+-||++.|.. .+
T Consensus 16 ~~iaV~r~~~~~~a~~i~~al~~~Gi~~iEitl~~~~~--------------------------------------~~-- 55 (212)
T PRK05718 16 PVVPVIVINKLEDAVPLAKALVAGGLPVLEVTLRTPAA--------------------------------------LE-- 55 (212)
T ss_pred CEEEEEEcCCHHHHHHHHHHHHHcCCCEEEEecCCccH--------------------------------------HH--
Confidence 34555667888998999999999999999998876521 00
Q ss_pred hhccCccccHHHHHhhc-CCCEEEEecCCHHHHHHHHHcCCcEEEEcCCCCCCCCCccchHHHHHHHHHHhcCCCcEEEe
Q 017718 205 AGQIDRSLSWKWLQTIT-KLPILVKGVLTAEDARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLD 283 (367)
Q Consensus 205 ~~~~d~~~~~~~l~~~~-~~Pv~vK~v~~~~~a~~~~~~G~d~i~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~~~via~ 283 (367)
.++.+++.. ++-|.+-.+.+.++++.+.++|+++++.-+ ...+.+..+.+ . .+|++
T Consensus 56 --------~I~~l~~~~p~~~IGAGTVl~~~~a~~a~~aGA~FivsP~----------~~~~vi~~a~~-~--~i~~i-- 112 (212)
T PRK05718 56 --------AIRLIAKEVPEALIGAGTVLNPEQLAQAIEAGAQFIVSPG----------LTPPLLKAAQE-G--PIPLI-- 112 (212)
T ss_pred --------HHHHHHHHCCCCEEEEeeccCHHHHHHHHHcCCCEEECCC----------CCHHHHHHHHH-c--CCCEe--
Confidence 122455444 355777777999999999999999997632 12245544433 2 45554
Q ss_pred cCCCCHHHHHHHHHcCCCEEEe
Q 017718 284 GGVRRGTDVFKALALGASGIFI 305 (367)
Q Consensus 284 GGI~~~~dv~kal~lGAd~V~i 305 (367)
=|+.|+.++..++.+||+.|-+
T Consensus 113 PG~~TptEi~~a~~~Ga~~vKl 134 (212)
T PRK05718 113 PGVSTPSELMLGMELGLRTFKF 134 (212)
T ss_pred CCCCCHHHHHHHHHCCCCEEEE
Confidence 4799999999999999999887
|
|
| >PRK13397 3-deoxy-7-phosphoheptulonate synthase; Provisional | Back alignment and domain information |
|---|
Probab=97.09 E-value=0.051 Score=51.13 Aligned_cols=200 Identities=21% Similarity=0.267 Sum_probs=107.0
Q ss_pred ccceeEcCeeeccceEe-CcccchhccCChhhHHHHHHHHHcCCceeec-CCCCCCHHHHHhhCCCceEEEEeecCCHHH
Q 017718 60 DMNTTVLGFKISMPIMI-APTAMQKMAHPEGEYATARAASAAGTIMTLS-SWSTSSVEEVASTGPGIRFFQLYVYKDRNV 137 (367)
Q Consensus 60 d~st~i~g~~l~~Pi~i-APm~~~~l~~~~~e~~~a~aa~~~G~~~~vs-~~~~~~~e~i~~~~~~~~~~QLy~~~d~~~ 137 (367)
++.+.+.+.....+.+| .|.+.- ..+--..+|+.++++|+.+..+ .+... . .|+.|| +-..+-
T Consensus 3 ~~~~~~~~~~~~~~~~iaGPC~vE---s~e~~~~~a~~~~~~g~~~~r~g~~kpR-------t--s~~sf~---G~G~~g 67 (250)
T PRK13397 3 DIMSDFQNKTCSKNNFIVGPCSIE---SYDHIRLAASSAKKLGYNYFRGGAYKPR-------T--SAASFQ---GLGLQG 67 (250)
T ss_pred cceEEecCccCCCCcEEeccCccC---CHHHHHHHHHHHHHcCCCEEEecccCCC-------C--CCcccC---CCCHHH
Confidence 34444555555545444 443322 2233358999999999998874 33211 1 345565 333455
Q ss_pred HHHHHHHHHHcCCcEEEEecCCCCCCchhHHhhhhcCCCCccccccccccccCccccccchhhHHHhhhccCccc-cHHH
Q 017718 138 VAQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLTLKNFQGLDLGKMDEANDSGLAAYVAGQIDRSL-SWKW 216 (367)
Q Consensus 138 ~~~~l~ra~~~G~~ai~itvd~p~~g~r~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~-~~~~ 216 (367)
...+.+.+++.|...+- ++-.+ +.-+....+ .+ -+. -+.... +.+.
T Consensus 68 l~~L~~~~~~~Gl~~~T-ev~d~----~~v~~~~e~-vd-ilq--------------------------Igs~~~~n~~L 114 (250)
T PRK13397 68 IRYLHEVCQEFGLLSVS-EIMSE----RQLEEAYDY-LD-VIQ--------------------------VGARNMQNFEF 114 (250)
T ss_pred HHHHHHHHHHcCCCEEE-eeCCH----HHHHHHHhc-CC-EEE--------------------------ECcccccCHHH
Confidence 66677777788877553 22211 111111000 00 000 000111 2222
Q ss_pred HH--hhcCCCEEEEec--CCHHH----HHHHHHcCCcEEEEcCCCCCCCCCc---cchHHHHHHHHHHhcCCCcEEEe--
Q 017718 217 LQ--TITKLPILVKGV--LTAED----ARIAVQAGAAGIIVSNHGARQLDYV---PATIMALEEVVKATQGRIPVFLD-- 283 (367)
Q Consensus 217 l~--~~~~~Pv~vK~v--~~~~~----a~~~~~~G~d~i~vs~~gg~~~~~~---~~~~~~l~~i~~~~~~~~~via~-- 283 (367)
|+ ..+++||++|.- .++++ ++.+.+.|..-|++--.|=++.... ...+..++.+++.. .+|||++
T Consensus 115 L~~va~tgkPVilk~G~~~t~~e~~~A~e~i~~~Gn~~i~L~eRg~~~Y~~~~~n~~dl~ai~~lk~~~--~lPVivd~S 192 (250)
T PRK13397 115 LKTLSHIDKPILFKRGLMATIEEYLGALSYLQDTGKSNIILCERGVRGYDVETRNMLDIMAVPIIQQKT--DLPIIVDVS 192 (250)
T ss_pred HHHHHccCCeEEEeCCCCCCHHHHHHHHHHHHHcCCCeEEEEccccCCCCCccccccCHHHHHHHHHHh--CCCeEECCC
Confidence 22 235899999987 45555 5667788886666642232222221 33556677776655 6899996
Q ss_pred --cCCCC--HHHHHHHHHcCCCEEEechHH
Q 017718 284 --GGVRR--GTDVFKALALGASGIFIGRPV 309 (367)
Q Consensus 284 --GGI~~--~~dv~kal~lGAd~V~ig~~~ 309 (367)
+|.|. ..-...|+++|||+++|-+-+
T Consensus 193 Hs~G~r~~v~~~a~AAvA~GAdGl~IE~H~ 222 (250)
T PRK13397 193 HSTGRRDLLLPAAKIAKAVGANGIMMEVHP 222 (250)
T ss_pred CCCcccchHHHHHHHHHHhCCCEEEEEecC
Confidence 44433 133567788999999998744
|
|
| >cd02812 PcrB_like PcrB_like proteins | Back alignment and domain information |
|---|
Probab=97.08 E-value=0.0029 Score=58.32 Aligned_cols=69 Identities=22% Similarity=0.255 Sum_probs=54.9
Q ss_pred HHHHHHcCCcEEEEcCCCCCCCCCccchHHHHHHHHHHhcCCCcEEEecCCCCHHHHHHHHHcCCCEEEechHHHH
Q 017718 236 ARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFIGRPVVY 311 (367)
Q Consensus 236 a~~~~~~G~d~i~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~~~via~GGI~~~~dv~kal~lGAd~V~ig~~~l~ 311 (367)
|..+...|...+.+... |. ....+.+..+++.+. ++|++..|||++.+++.+++.+|||.|.+|+.+.-
T Consensus 141 A~aae~~g~~ivyLe~S-G~-----~~~~e~I~~v~~~~~-~~pl~vGGGIrs~e~a~~l~~aGAD~VVVGsai~~ 209 (219)
T cd02812 141 ALAAEYLGMPIVYLEYS-GA-----YGPPEVVRAVKKVLG-DTPLIVGGGIRSGEQAKEMAEAGADTIVVGNIVEE 209 (219)
T ss_pred HHHHHHcCCeEEEeCCC-CC-----cCCHHHHHHHHHhcC-CCCEEEeCCCCCHHHHHHHHHcCCCEEEECchhhC
Confidence 67788889888888622 21 245677777777542 68999999999999999999999999999998763
|
One member of this family, a protein from Archaeoglobus fulgidus, has been characterized as a (S)-3-O-geranylgeranylglyceryl phosphate synthase (AfGGGPS). AfGGGPS catalyzes the formation of an ether linkage between sn-glycerol-1-phosphate (G1P) and geranylgeranyl diphosphate (GGPP), the committed step in archaeal lipid biosynthesis. Therefore, it has been proposed that PcrB-like proteins are either prenyltransferases or are involved in lipoteichoic acid biosynthesis although the exact function is still unknown. |
| >PRK09016 quinolinate phosphoribosyltransferase; Validated | Back alignment and domain information |
|---|
Probab=97.05 E-value=0.027 Score=54.17 Aligned_cols=85 Identities=24% Similarity=0.220 Sum_probs=64.0
Q ss_pred HHHHHhhc-CCCEEEEecCCHHHHHHHHHcCCcEEEEcCCCCCCCCCccchHHHHHHHHHHhcCCCcEEEecCCCCHHHH
Q 017718 214 WKWLQTIT-KLPILVKGVLTAEDARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDV 292 (367)
Q Consensus 214 ~~~l~~~~-~~Pv~vK~v~~~~~a~~~~~~G~d~i~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~~~via~GGI~~~~dv 292 (367)
|+.+|+.. ..||. -.+-+.++++.+.++|+|.|.+.| -+.+.+.++.+..+.++.+.++||| +.+.+
T Consensus 199 v~~~r~~~~~~kIe-VEv~sleea~ea~~~gaDiI~LDn----------~s~e~~~~av~~~~~~~~ieaSGGI-~~~ni 266 (296)
T PRK09016 199 VEKAFWLHPDVPVE-VEVENLDELDQALKAGADIIMLDN----------FTTEQMREAVKRTNGRALLEVSGNV-TLETL 266 (296)
T ss_pred HHHHHHhCCCCCEE-EEeCCHHHHHHHHHcCCCEEEeCC----------CChHHHHHHHHhhcCCeEEEEECCC-CHHHH
Confidence 33555443 24543 366889999999999999999977 1235566666655568899999998 46788
Q ss_pred HHHHHcCCCEEEechHHH
Q 017718 293 FKALALGASGIFIGRPVV 310 (367)
Q Consensus 293 ~kal~lGAd~V~ig~~~l 310 (367)
.++-.+|+|.+.+|.+..
T Consensus 267 ~~yA~tGVD~Is~galth 284 (296)
T PRK09016 267 REFAETGVDFISVGALTK 284 (296)
T ss_pred HHHHhcCCCEEEeCcccc
Confidence 888899999999998553
|
|
| >PRK13307 bifunctional formaldehyde-activating enzyme/3-hexulose-6-phosphate synthase; Provisional | Back alignment and domain information |
|---|
Probab=97.04 E-value=0.035 Score=55.59 Aligned_cols=143 Identities=19% Similarity=0.196 Sum_probs=87.5
Q ss_pred CHHHHHhhCC-CceEEEEeecCCHHHHHHHHHHHHHcCCcEEEEecCCCCCCchhHHhhhhcCCCCccccccccccccCc
Q 017718 113 SVEEVASTGP-GIRFFQLYVYKDRNVVAQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLTLKNFQGLDLGK 191 (367)
Q Consensus 113 ~~e~i~~~~~-~~~~~QLy~~~d~~~~~~~l~ra~~~G~~ai~itvd~p~~g~r~~~~~~~~~~p~~~~~~~~~~~~~~~ 191 (367)
.++++.+..+ .+....|-. .|.+.+. ++.+.++|++.+.++.-.+..
T Consensus 216 iVk~Lr~~~~~~~I~~DLK~-~Di~~~v--v~~~a~aGAD~vTVH~ea~~~----------------------------- 263 (391)
T PRK13307 216 VISKIREVRPDAFIVADLKT-LDTGNLE--ARMAADATADAVVISGLAPIS----------------------------- 263 (391)
T ss_pred HHHHHHHhCCCCeEEEEecc-cChhhHH--HHHHHhcCCCEEEEeccCCHH-----------------------------
Confidence 3456665544 345666653 4555442 777888999988776532110
Q ss_pred cccccchhhHHHhhhccCccccHHHHHhhcCCCEEEEec--CCH-HHHHHHHHcCCcEEEEcCCCCCCCCCccchHHHHH
Q 017718 192 MDEANDSGLAAYVAGQIDRSLSWKWLQTITKLPILVKGV--LTA-EDARIAVQAGAAGIIVSNHGARQLDYVPATIMALE 268 (367)
Q Consensus 192 ~~~~~~~~~~~~~~~~~d~~~~~~~l~~~~~~Pv~vK~v--~~~-~~a~~~~~~G~d~i~vs~~gg~~~~~~~~~~~~l~ 268 (367)
...+ ..+.+|+ .++-+.+-.. .++ +.++.+ ..++|.|.+. .+....+..+.++.+.
T Consensus 264 -------ti~~----------ai~~akk-~GikvgVD~lnp~tp~e~i~~l-~~~vD~Vllh--t~vdp~~~~~~~~kI~ 322 (391)
T PRK13307 264 -------TIEK----------AIHEAQK-TGIYSILDMLNVEDPVKLLESL-KVKPDVVELH--RGIDEEGTEHAWGNIK 322 (391)
T ss_pred -------HHHH----------HHHHHHH-cCCEEEEEEcCCCCHHHHHHHh-hCCCCEEEEc--cccCCCcccchHHHHH
Confidence 0000 1113333 4555555322 233 344444 7899999884 2221112345667777
Q ss_pred HHHHHhcCCCcEEEecCCCCHHHHHHHHHcCCCEEEechHHH
Q 017718 269 EVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFIGRPVV 310 (367)
Q Consensus 269 ~i~~~~~~~~~via~GGI~~~~dv~kal~lGAd~V~ig~~~l 310 (367)
++++. ..+++|.++|||. .+++.+++.+|||.+.+||.+.
T Consensus 323 ~ikk~-~~~~~I~VdGGI~-~eti~~l~~aGADivVVGsaIf 362 (391)
T PRK13307 323 EIKKA-GGKILVAVAGGVR-VENVEEALKAGADILVVGRAIT 362 (391)
T ss_pred HHHHh-CCCCcEEEECCcC-HHHHHHHHHcCCCEEEEeHHHh
Confidence 77665 3478999999999 7889899999999999999854
|
|
| >TIGR01769 GGGP geranylgeranylglyceryl phosphate synthase | Back alignment and domain information |
|---|
Probab=97.02 E-value=0.0037 Score=57.10 Aligned_cols=66 Identities=23% Similarity=0.328 Sum_probs=52.9
Q ss_pred HHHHHHcCCcEEEEcCCCCCCCCCccchHHHHHHHHHHhcCCCcEEEecCCCCHHHHHHHHHcCCCEEEec
Q 017718 236 ARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFIG 306 (367)
Q Consensus 236 a~~~~~~G~d~i~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~~~via~GGI~~~~dv~kal~lGAd~V~ig 306 (367)
|..+...|++.|.+-...|. ..+...+.+.++++.+ ++|++.-|||++.+++.+++..|||.|.+|
T Consensus 140 a~aa~~~G~~~i~Le~~sGa---~~~v~~e~i~~Vk~~~--~~Pv~vGGGIrs~e~a~~l~~~GAD~VVVG 205 (205)
T TIGR01769 140 CLAAKYFGMKWVYLEAGSGA---SYPVNPETISLVKKAS--GIPLIVGGGIRSPEIAYEIVLAGADAIVTG 205 (205)
T ss_pred HHHHHHcCCCEEEEEcCCCC---CCCCCHHHHHHHHHhh--CCCEEEeCCCCCHHHHHHHHHcCCCEEEeC
Confidence 56677889999988542222 2234577888888877 799999999999999999999999999987
|
This model represents geranylgeranylglyceryl phosphate synthase which catalyzes the first committed step in the synthesis of ether-linked membrane lipids in archaea. The active enzyme is reported to be a homopentamer in Methanobacterium thermoautotrophicum but is reported to be a homodimer in Thermoplasma acidophilum. |
| >PRK07896 nicotinate-nucleotide pyrophosphorylase; Provisional | Back alignment and domain information |
|---|
Probab=97.00 E-value=0.04 Score=52.94 Aligned_cols=86 Identities=16% Similarity=0.200 Sum_probs=62.8
Q ss_pred cHHHHHhhc-CCCEEEEecCCHHHHHHHHHcCCcEEEEcCCCCCCCCCccchHHHHHHHHHH---hcCCCcEEEecCCCC
Q 017718 213 SWKWLQTIT-KLPILVKGVLTAEDARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKA---TQGRIPVFLDGGVRR 288 (367)
Q Consensus 213 ~~~~l~~~~-~~Pv~vK~v~~~~~a~~~~~~G~d~i~vs~~gg~~~~~~~~~~~~l~~i~~~---~~~~~~via~GGI~~ 288 (367)
.|+.+|+.. ..|+.| .+-+.+++..+.++|+|.|.+.| + +.+.++++.+. ...++.+.++||| +
T Consensus 189 ai~~~r~~~~~~kIeV-Ev~tl~ea~eal~~gaDiI~LDn-----m-----~~e~vk~av~~~~~~~~~v~ieaSGGI-~ 256 (289)
T PRK07896 189 ALRAVRAAAPDLPCEV-EVDSLEQLDEVLAEGAELVLLDN-----F-----PVWQTQEAVQRRDARAPTVLLESSGGL-T 256 (289)
T ss_pred HHHHHHHhCCCCCEEE-EcCCHHHHHHHHHcCCCEEEeCC-----C-----CHHHHHHHHHHHhccCCCEEEEEECCC-C
Confidence 344666544 355443 67899999999999999999986 1 13333333332 3457889999998 5
Q ss_pred HHHHHHHHHcCCCEEEechHHH
Q 017718 289 GTDVFKALALGASGIFIGRPVV 310 (367)
Q Consensus 289 ~~dv~kal~lGAd~V~ig~~~l 310 (367)
.+.+.++..+|+|.+.+|.+..
T Consensus 257 ~~ni~~yA~tGvD~Is~galt~ 278 (289)
T PRK07896 257 LDTAAAYAETGVDYLAVGALTH 278 (289)
T ss_pred HHHHHHHHhcCCCEEEeChhhc
Confidence 6888899999999999998664
|
|
| >PRK05718 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional | Back alignment and domain information |
|---|
Probab=96.99 E-value=0.029 Score=51.54 Aligned_cols=155 Identities=17% Similarity=0.122 Sum_probs=95.0
Q ss_pred hHHHHHHHHHcCCceeecCCCCC----CHHHHHhhCCCceEEEEeecCCHHHHHHHHHHHHHcCCcEEEEecCCCCCCch
Q 017718 90 EYATARAASAAGTIMTLSSWSTS----SVEEVASTGPGIRFFQLYVYKDRNVVAQLVRRAERAGFKAIALTVDTPRLGRR 165 (367)
Q Consensus 90 e~~~a~aa~~~G~~~~vs~~~~~----~~e~i~~~~~~~~~~QLy~~~d~~~~~~~l~ra~~~G~~ai~itvd~p~~g~r 165 (367)
-..+++++.+.|+..+==++.+. .++++.+..|+ +..+.+--.+.+.++++.++|++.++. |..
T Consensus 29 a~~i~~al~~~Gi~~iEitl~~~~~~~~I~~l~~~~p~-----~~IGAGTVl~~~~a~~a~~aGA~Fivs----P~~--- 96 (212)
T PRK05718 29 AVPLAKALVAGGLPVLEVTLRTPAALEAIRLIAKEVPE-----ALIGAGTVLNPEQLAQAIEAGAQFIVS----PGL--- 96 (212)
T ss_pred HHHHHHHHHHcCCCEEEEecCCccHHHHHHHHHHHCCC-----CEEEEeeccCHHHHHHHHHcCCCEEEC----CCC---
Confidence 35789999999988662223322 34455555542 222333333446678888899988752 210
Q ss_pred hHHhhhhcCCCCccccccccccccCccccccchhhHHHhhhccCccccHHHHHhhcCCCEEEEecCCHHHHHHHHHcCCc
Q 017718 166 EADIKNRFTLPPFLTLKNFQGLDLGKMDEANDSGLAAYVAGQIDRSLSWKWLQTITKLPILVKGVLTAEDARIAVQAGAA 245 (367)
Q Consensus 166 ~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~l~~~~~~Pv~vK~v~~~~~a~~~~~~G~d 245 (367)
++. .+++.+ ..++|++ =+++++.++..+.++|++
T Consensus 97 -------------------------------------------~~~-vi~~a~-~~~i~~i-PG~~TptEi~~a~~~Ga~ 130 (212)
T PRK05718 97 -------------------------------------------TPP-LLKAAQ-EGPIPLI-PGVSTPSELMLGMELGLR 130 (212)
T ss_pred -------------------------------------------CHH-HHHHHH-HcCCCEe-CCCCCHHHHHHHHHCCCC
Confidence 000 111222 2577774 478899889999999999
Q ss_pred EEEEcCCCCCCCCCccchHHHHHHHHHHhcCCCcEEEecCCCCHHHHHHHHHcCCCEEEechHHHH
Q 017718 246 GIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFIGRPVVY 311 (367)
Q Consensus 246 ~i~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~~~via~GGI~~~~dv~kal~lGAd~V~ig~~~l~ 311 (367)
.+.+.-.+ .. +|+ ..++.++.-++ .++++..|||.- +++.+.+.+|+..++. +.+|+
T Consensus 131 ~vKlFPa~--~~-gg~---~~lk~l~~p~p-~~~~~ptGGV~~-~ni~~~l~ag~v~~vg-gs~L~ 187 (212)
T PRK05718 131 TFKFFPAE--AS-GGV---KMLKALAGPFP-DVRFCPTGGISP-ANYRDYLALPNVLCIG-GSWMV 187 (212)
T ss_pred EEEEccch--hc-cCH---HHHHHHhccCC-CCeEEEeCCCCH-HHHHHHHhCCCEEEEE-ChHhC
Confidence 99994311 11 233 34444443343 699999999976 8899999999555544 55554
|
|
| >PRK13586 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Provisional | Back alignment and domain information |
|---|
Probab=96.98 E-value=0.008 Score=56.04 Aligned_cols=74 Identities=22% Similarity=0.182 Sum_probs=58.8
Q ss_pred HHHHHHHHHcCCcEEEEcCCCCCCCCCccchHHHHHHHHHHhcCCCcEEEecCCCCHHHHHHHHHcCCCEEEechHHH
Q 017718 233 AEDARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFIGRPVV 310 (367)
Q Consensus 233 ~~~a~~~~~~G~d~i~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~~~via~GGI~~~~dv~kal~lGAd~V~ig~~~l 310 (367)
.+.|+...+.|++.+.+-.-.+. .+.....+.+.++.+.. -.|+...|||++-+|+.+++.+||+-|.+|+..+
T Consensus 33 ~~~a~~~~~~ga~~lhivDLd~a--~~~~~n~~~i~~i~~~~--~~~v~vGGGIrs~e~~~~~l~~Ga~kvvigt~a~ 106 (232)
T PRK13586 33 IEIASKLYNEGYTRIHVVDLDAA--EGVGNNEMYIKEISKIG--FDWIQVGGGIRDIEKAKRLLSLDVNALVFSTIVF 106 (232)
T ss_pred HHHHHHHHHCCCCEEEEEECCCc--CCCcchHHHHHHHHhhC--CCCEEEeCCcCCHHHHHHHHHCCCCEEEECchhh
Confidence 36688889999999998653332 13455678888887643 2499999999999999999999999999999664
|
|
| >TIGR02134 transald_staph transaldolase | Back alignment and domain information |
|---|
Probab=96.98 E-value=0.17 Score=47.24 Aligned_cols=176 Identities=13% Similarity=0.111 Sum_probs=110.7
Q ss_pred hhHHHHHHHHHcCCceeecCCCC-------CCHHHHH----h-hCCCceEEEEeecCCHHHHHHHHHHHHHcCCcEEEEe
Q 017718 89 GEYATARAASAAGTIMTLSSWST-------SSVEEVA----S-TGPGIRFFQLYVYKDRNVVAQLVRRAERAGFKAIALT 156 (367)
Q Consensus 89 ~e~~~a~aa~~~G~~~~vs~~~~-------~~~e~i~----~-~~~~~~~~QLy~~~d~~~~~~~l~ra~~~G~~ai~it 156 (367)
.|+.-.+.+.+.|..-.++|..+ ...+++. . ..+++..+|++ ..|.+.+.+..++..+.+- .++|-
T Consensus 13 Ad~~ei~~~~~~g~i~GvTTNPsll~k~g~~~~~~~~~~i~~~~~~~~vs~EV~-~~d~~~m~~eA~~l~~~~~-nv~VK 90 (236)
T TIGR02134 13 ANLEEMVKFSTHPYVKGFTTNPSLMRKAGIVDYEAFAHEALAQITDLPISFEVF-ADDLDEMEKEARYIASWGN-NVNVK 90 (236)
T ss_pred CCHHHHHHHHhCCCeeEEeCCHHHHHhcCCCCHHHHHHHHHHHccCCcEEEEEe-cCCHHHHHHHHHHHHhcCC-CeEEE
Confidence 46777888888888878876522 1233332 2 22367889997 6676666555555555553 34442
Q ss_pred cCCCCCCchhHHhhhhcCCCCccccccccccccCccccccchhhHHHhhhccCccc-cHHHHHhhcCCCEEEEecCCHHH
Q 017718 157 VDTPRLGRREADIKNRFTLPPFLTLKNFQGLDLGKMDEANDSGLAAYVAGQIDRSL-SWKWLQTITKLPILVKGVLTAED 235 (367)
Q Consensus 157 vd~p~~g~r~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~-~~~~l~~~~~~Pv~vK~v~~~~~ 235 (367)
+ |+. .. .+ ...+ ..+.|++ -++++-+-.+.+...
T Consensus 91 I--P~T------------------~~-------------~G-----------~~~l~ai~~L~~-~GI~vn~T~vfs~~Q 125 (236)
T TIGR02134 91 I--PVT------------------NT-------------KG-----------ESTGPLIQKLSA-DGITLNVTALTTIEQ 125 (236)
T ss_pred E--CCc------------------Cc-------------cc-----------chHHHHHHHHHH-CCCcEEeehcCCHHH
Confidence 2 210 00 00 0000 1123433 388999988999988
Q ss_pred HHHH---HHcC-CcEEEEcCCCCCCCCCccchHHHHHHHHHHhc--CCCcEEEecCCCCHHHHHHHHHcCCCEEEechHH
Q 017718 236 ARIA---VQAG-AAGIIVSNHGARQLDYVPATIMALEEVVKATQ--GRIPVFLDGGVRRGTDVFKALALGASGIFIGRPV 309 (367)
Q Consensus 236 a~~~---~~~G-~d~i~vs~~gg~~~~~~~~~~~~l~~i~~~~~--~~~~via~GGI~~~~dv~kal~lGAd~V~ig~~~ 309 (367)
+..+ .++| +++|.. .-||--|.|......+.++.+.+. .+..|++.+ +|+..++.++..+|||.+-+.-.+
T Consensus 126 a~~aa~A~~aG~a~yisp--fvgR~dd~g~D~~~~i~~i~~i~~~~~~tkILaAS-~R~~~~v~~a~~~Gad~vTvp~~v 202 (236)
T TIGR02134 126 VEKVCQSFTDGVPGIVSV--FAGRIADTGVDPEPHMREALEIVAQKPGVELLWAS-PRELFNIIQADRIGCDIITCAHDI 202 (236)
T ss_pred HHHHHHHHhCCCCeEEEE--ecchhhhcCCCcHHHHHHHHHHHHhCCCcEEEEEc-cCCHHHHHHHHHcCCCEEECCHHH
Confidence 8864 4589 588776 335533555555555555554432 367888876 999999999999999999999888
Q ss_pred HHHhh
Q 017718 310 VYSLA 314 (367)
Q Consensus 310 l~~l~ 314 (367)
+..+.
T Consensus 203 ~~~l~ 207 (236)
T TIGR02134 203 LAKLP 207 (236)
T ss_pred HHHHH
Confidence 77664
|
This small family of proteins is a member of the transaldolase sybfamily represented by pfam00923. Coxiella and Staphylococcus lack members of the known transaldolase equivalog families and appear to require a transaldolase activity for completion of the pentose phosphate pathway. |
| >PRK06106 nicotinate-nucleotide pyrophosphorylase; Provisional | Back alignment and domain information |
|---|
Probab=96.97 E-value=0.0086 Score=57.25 Aligned_cols=85 Identities=21% Similarity=0.171 Sum_probs=65.5
Q ss_pred HHHHHhhcC--CCEEEEecCCHHHHHHHHHcCCcEEEEcCCCCCCCCCccchHHHHHHHHHHhcCCCcEEEecCCCCHHH
Q 017718 214 WKWLQTITK--LPILVKGVLTAEDARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTD 291 (367)
Q Consensus 214 ~~~l~~~~~--~Pv~vK~v~~~~~a~~~~~~G~d~i~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~~~via~GGI~~~~d 291 (367)
++.+|+..+ .+|.| .+.+.++++.+.++|+|.|.+.| -+.+.+.++.+.++.+.++.++||| +.+.
T Consensus 184 i~~~r~~~~~~~kIeV-Ev~tleea~ea~~~gaDiI~LDn----------~s~e~l~~av~~~~~~~~leaSGGI-~~~n 251 (281)
T PRK06106 184 IRRARAGVGHLVKIEV-EVDTLDQLEEALELGVDAVLLDN----------MTPDTLREAVAIVAGRAITEASGRI-TPET 251 (281)
T ss_pred HHHHHHhCCCCCcEEE-EeCCHHHHHHHHHcCCCEEEeCC----------CCHHHHHHHHHHhCCCceEEEECCC-CHHH
Confidence 335666543 44444 56899999999999999999987 2345666666666667889999999 4678
Q ss_pred HHHHHHcCCCEEEechHHH
Q 017718 292 VFKALALGASGIFIGRPVV 310 (367)
Q Consensus 292 v~kal~lGAd~V~ig~~~l 310 (367)
+.++-.+|.|.+.+|.+..
T Consensus 252 i~~yA~tGVD~Is~Galth 270 (281)
T PRK06106 252 APAIAASGVDLISVGWLTH 270 (281)
T ss_pred HHHHHhcCCCEEEeChhhc
Confidence 8888899999999998654
|
|
| >PF01729 QRPTase_C: Quinolinate phosphoribosyl transferase, C-terminal domain; InterPro: IPR002638 Quinolinate phosphoribosyl transferase (QPRTase) or nicotinate-nucleotide pyrophosphorylase 2 | Back alignment and domain information |
|---|
Probab=96.94 E-value=0.0091 Score=52.92 Aligned_cols=86 Identities=23% Similarity=0.244 Sum_probs=60.4
Q ss_pred HHHHHhhcC-CCEEEEecCCHHHHHHHHHcCCcEEEEcCCCCCCCCCccchHHHHHHHHH---HhcCCCcEEEecCCCCH
Q 017718 214 WKWLQTITK-LPILVKGVLTAEDARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVK---ATQGRIPVFLDGGVRRG 289 (367)
Q Consensus 214 ~~~l~~~~~-~Pv~vK~v~~~~~a~~~~~~G~d~i~vs~~gg~~~~~~~~~~~~l~~i~~---~~~~~~~via~GGI~~~ 289 (367)
|+.+++..+ .+-+.=.+.+.++++.+.++|+|.|.+.|- .+ +.+.++.+ ....++.|.++||| +.
T Consensus 70 v~~~~~~~~~~~~I~VEv~~~ee~~ea~~~g~d~I~lD~~-------~~---~~~~~~v~~l~~~~~~v~ie~SGGI-~~ 138 (169)
T PF01729_consen 70 VKAARQAAPEKKKIEVEVENLEEAEEALEAGADIIMLDNM-------SP---EDLKEAVEELRELNPRVKIEASGGI-TL 138 (169)
T ss_dssp HHHHHHHSTTTSEEEEEESSHHHHHHHHHTT-SEEEEES--------CH---HHHHHHHHHHHHHTTTSEEEEESSS-ST
T ss_pred HHHHHHhCCCCceEEEEcCCHHHHHHHHHhCCCEEEecCc-------CH---HHHHHHHHHHhhcCCcEEEEEECCC-CH
Confidence 336666553 332344678899999999999999999872 23 33333333 44557999999999 45
Q ss_pred HHHHHHHHcCCCEEEechHHH
Q 017718 290 TDVFKALALGASGIFIGRPVV 310 (367)
Q Consensus 290 ~dv~kal~lGAd~V~ig~~~l 310 (367)
+.+.++...|+|.+.+|+...
T Consensus 139 ~ni~~ya~~gvD~isvg~~~~ 159 (169)
T PF01729_consen 139 ENIAEYAKTGVDVISVGSLTH 159 (169)
T ss_dssp TTHHHHHHTT-SEEEECHHHH
T ss_pred HHHHHHHhcCCCEEEcChhhc
Confidence 778889999999999998654
|
4.2.19 from EC is involved in the de novo synthesis of NAD in both prokaryotes and eukaryotes. It catalyses the reaction of quinolinic acid with 5-phosphoribosyl-1-pyrophosphate (PRPP) in the presence of Mg2+ to give rise to nicotinic acid mononucleotide (NaMN), pyrophosphate and carbon dioxide [, ]. Unlike IPR004393 from INTERPRO, this domain also includes the molybdenum transport system protein ModD.; GO: 0004514 nicotinate-nucleotide diphosphorylase (carboxylating) activity, 0009435 NAD biosynthetic process; PDB: 3C2O_A 3C2F_A 3C2E_A 3C2R_A 3C2V_A 1QPN_E 1QPO_A 1QPQ_F 1QPR_E 2I14_D .... |
| >PRK14114 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Provisional | Back alignment and domain information |
|---|
Probab=96.94 E-value=0.0051 Score=57.67 Aligned_cols=73 Identities=18% Similarity=0.188 Sum_probs=58.6
Q ss_pred HHHHHHHHcCCcEEEEcCCCCCCCCCccchHHHHHHHHHHhcCCCcEEEecCCCCHHHHHHHHHcCCCEEEechHHH
Q 017718 234 EDARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFIGRPVV 310 (367)
Q Consensus 234 ~~a~~~~~~G~d~i~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~~~via~GGI~~~~dv~kal~lGAd~V~ig~~~l 310 (367)
+.|+...+.|+|.+.+-.--+ ...+.+...+.+.++.+.+ .||...|||++-+|+.+++.+||+-|.+||..+
T Consensus 34 ~~A~~~~~~ga~~lhivDLd~-a~~g~~~n~~~i~~i~~~~---~~v~vGGGIrs~e~~~~~l~~Ga~rvvigT~a~ 106 (241)
T PRK14114 34 ELVEKLIEEGFTLIHVVDLSK-AIENSVENLPVLEKLSEFA---EHIQIGGGIRSLDYAEKLRKLGYRRQIVSSKVL 106 (241)
T ss_pred HHHHHHHHCCCCEEEEEECCC-cccCCcchHHHHHHHHhhc---CcEEEecCCCCHHHHHHHHHCCCCEEEECchhh
Confidence 568888999999998754211 1224456788899988765 599999999999999999999999999999553
|
|
| >PRK13586 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Provisional | Back alignment and domain information |
|---|
Probab=96.93 E-value=0.0047 Score=57.57 Aligned_cols=72 Identities=15% Similarity=0.070 Sum_probs=55.0
Q ss_pred HHHHHHHHcCCcEEEEcCC--CCCCCCCccchHHHHHHHHHHhcCCCcEEEecCCCCHHHHHHHHHcCCCEEEechHHHH
Q 017718 234 EDARIAVQAGAAGIIVSNH--GARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFIGRPVVY 311 (367)
Q Consensus 234 ~~a~~~~~~G~d~i~vs~~--gg~~~~~~~~~~~~l~~i~~~~~~~~~via~GGI~~~~dv~kal~lGAd~V~ig~~~l~ 311 (367)
+.++.+.+.|+..|++.+- -|+. .| +.++.+..+.+. ..|+|++|||++.+|+.++..+|+++|.+|+++.-
T Consensus 150 e~~~~l~~~g~~~ii~tdI~~dGt~--~G-~d~el~~~~~~~---~~~viasGGv~s~~Dl~~l~~~G~~gvivg~Aly~ 223 (232)
T PRK13586 150 DGIKKVNELELLGIIFTYISNEGTT--KG-IDYNVKDYARLI---RGLKEYAGGVSSDADLEYLKNVGFDYIIVGMAFYL 223 (232)
T ss_pred HHHHHHHhcCCCEEEEecccccccC--cC-cCHHHHHHHHhC---CCCEEEECCCCCHHHHHHHHHCCCCEEEEehhhhc
Confidence 5678899999999888642 1211 22 456667766543 34599999999999999999999999999998753
|
|
| >COG0800 Eda 2-keto-3-deoxy-6-phosphogluconate aldolase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=96.89 E-value=0.015 Score=53.09 Aligned_cols=162 Identities=19% Similarity=0.211 Sum_probs=101.3
Q ss_pred ecCCHHHHHHHHHHHHHcCCcEEEEecCCCCCCchhHHhhhhcCCCCccccc--cccccccCccccccchhhHHHhhhcc
Q 017718 131 VYKDRNVVAQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLTLK--NFQGLDLGKMDEANDSGLAAYVAGQI 208 (367)
Q Consensus 131 ~~~d~~~~~~~l~ra~~~G~~ai~itvd~p~~g~r~~~~~~~~~~p~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~ 208 (367)
...+.+....+++...+.|+++|-||+.+|....--+.+++.+ |. .... .+...+ .. .....+.++++-
T Consensus 20 r~~~~e~a~~~a~Ali~gGi~~IEITl~sp~a~e~I~~l~~~~--p~-~lIGAGTVL~~~--q~-~~a~~aGa~fiV--- 90 (211)
T COG0800 20 RGDDVEEALPLAKALIEGGIPAIEITLRTPAALEAIRALAKEF--PE-ALIGAGTVLNPE--QA-RQAIAAGAQFIV--- 90 (211)
T ss_pred EeCCHHHHHHHHHHHHHcCCCeEEEecCCCCHHHHHHHHHHhC--cc-cEEccccccCHH--HH-HHHHHcCCCEEE---
Confidence 3678888889999999999999999999999766666666655 31 1110 000000 00 000000011110
Q ss_pred CccccHH--HHHhhcCCCEEEEecCCHHHHHHHHHcCCcEEEEcCCCCCCCCCccchHHHHHHHHHHhcCCCcEEEecCC
Q 017718 209 DRSLSWK--WLQTITKLPILVKGVLTAEDARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGV 286 (367)
Q Consensus 209 d~~~~~~--~l~~~~~~Pv~vK~v~~~~~a~~~~~~G~d~i~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~~~via~GGI 286 (367)
.|.++-+ ......++|++ =+++++-++..+.++|++.+-+.-.. ..+++.....+. ..-.+++++..|||
T Consensus 91 sP~~~~ev~~~a~~~~ip~~-PG~~TptEi~~Ale~G~~~lK~FPa~---~~Gg~~~~ka~~----gP~~~v~~~pTGGV 162 (211)
T COG0800 91 SPGLNPEVAKAANRYGIPYI-PGVATPTEIMAALELGASALKFFPAE---VVGGPAMLKALA----GPFPQVRFCPTGGV 162 (211)
T ss_pred CCCCCHHHHHHHHhCCCccc-CCCCCHHHHHHHHHcChhheeecCcc---ccCcHHHHHHHc----CCCCCCeEeecCCC
Confidence 2333333 33344678885 58899999999999999999985321 112332222221 11136899999999
Q ss_pred CCHHHHHHHHHcCCCEEEechHHH
Q 017718 287 RRGTDVFKALALGASGIFIGRPVV 310 (367)
Q Consensus 287 ~~~~dv~kal~lGAd~V~ig~~~l 310 (367)
..- .+...+++|+.+|++|+-+.
T Consensus 163 s~~-N~~~yla~gv~avG~Gs~l~ 185 (211)
T COG0800 163 SLD-NAADYLAAGVVAVGLGSWLV 185 (211)
T ss_pred CHH-HHHHHHhCCceEEecCcccc
Confidence 764 89999999999998888554
|
|
| >PRK08185 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=96.87 E-value=0.45 Score=45.70 Aligned_cols=110 Identities=23% Similarity=0.318 Sum_probs=76.1
Q ss_pred CCHHHHHHHHHc-CCcEEEEcC---CCCCCCCCcc-chHHHHHHHHHHhcCCCcEEEecCCCCH-HHHHHHHHcCCCEEE
Q 017718 231 LTAEDARIAVQA-GAAGIIVSN---HGARQLDYVP-ATIMALEEVVKATQGRIPVFLDGGVRRG-TDVFKALALGASGIF 304 (367)
Q Consensus 231 ~~~~~a~~~~~~-G~d~i~vs~---~gg~~~~~~~-~~~~~l~~i~~~~~~~~~via~GGI~~~-~dv~kal~lGAd~V~ 304 (367)
.++++|+...+. |+|++.++. ||-+.-...| -.++.|.+|++.+ ++|+++=||+..+ +++.|++.+|..-|=
T Consensus 149 t~peea~~f~~~TgvD~LAvaiGt~HG~y~~~~kp~L~~e~l~~I~~~~--~iPLVlHGgsg~~~e~~~~ai~~GI~KiN 226 (283)
T PRK08185 149 TDPEQAEDFVSRTGVDTLAVAIGTAHGIYPKDKKPELQMDLLKEINERV--DIPLVLHGGSANPDAEIAESVQLGVGKIN 226 (283)
T ss_pred CCHHHHHHHHHhhCCCEEEeccCcccCCcCCCCCCCcCHHHHHHHHHhh--CCCEEEECCCCCCHHHHHHHHHCCCeEEE
Confidence 578999888876 999999964 4432211111 2588999998877 7999999999655 556678899999999
Q ss_pred echHHHHHhhc-------cCh------HHHHHHHHHHHHHHHHHHHHhCCC
Q 017718 305 IGRPVVYSLAA-------EGE------KGVRRVLEMLREEFELAMALSGCR 342 (367)
Q Consensus 305 ig~~~l~~l~~-------~G~------~~v~~~i~~l~~el~~~m~~~G~~ 342 (367)
++|-+..+... ..+ .-.....+.+++..+..|+.+|..
T Consensus 227 i~T~l~~a~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~i~~~gs~ 277 (283)
T PRK08185 227 ISSDMKYAFFKKVREILSDNPSLYEPNQIYPSAIEAAKEVVRHKMDLFNST 277 (283)
T ss_pred eChHHHHHHHHHHHHHHHhCcCcCCHHHHHHHHHHHHHHHHHHHHHHhCCC
Confidence 99977554210 111 113334456777777888888854
|
|
| >PRK04128 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Provisional | Back alignment and domain information |
|---|
Probab=96.85 E-value=0.0036 Score=58.21 Aligned_cols=36 Identities=31% Similarity=0.478 Sum_probs=33.8
Q ss_pred CCcEEEecCCCCHHHHHHHHHcCCCEEEechHHHHH
Q 017718 277 RIPVFLDGGVRRGTDVFKALALGASGIFIGRPVVYS 312 (367)
Q Consensus 277 ~~~via~GGI~~~~dv~kal~lGAd~V~ig~~~l~~ 312 (367)
++|||++|||++.+|+.++..+|+++|.+|++|.++
T Consensus 182 ~~pviasGGv~~~~Dl~~l~~~g~~gvivg~al~~g 217 (228)
T PRK04128 182 DEEFIYAGGVSSAEDVKKLAEIGFSGVIIGKALYEG 217 (228)
T ss_pred CCCEEEECCCCCHHHHHHHHHCCCCEEEEEhhhhcC
Confidence 799999999999999999999999999999998763
|
|
| >KOG1606 consensus Stationary phase-induced protein, SOR/SNZ family [Coenzyme transport and metabolism] | Back alignment and domain information |
|---|
Probab=96.84 E-value=0.01 Score=53.79 Aligned_cols=96 Identities=26% Similarity=0.479 Sum_probs=67.9
Q ss_pred cHH-HHHh-hcCCCEEEEecCCHHHHHHHHHcCCcEEEEcCCCCCC---------------------CCC---------c
Q 017718 213 SWK-WLQT-ITKLPILVKGVLTAEDARIAVQAGAAGIIVSNHGARQ---------------------LDY---------V 260 (367)
Q Consensus 213 ~~~-~l~~-~~~~Pv~vK~v~~~~~a~~~~~~G~d~i~vs~~gg~~---------------------~~~---------~ 260 (367)
+|+ .+.+ ++++|++ .++-+..+|.+-+..|+.-|..-+.-|+. .+. -
T Consensus 114 D~~hhI~KhnFkvPFv-CG~rdlGEALRRI~EGAAMIRtkGeagTG~v~EaVkhvr~i~geir~~~~m~~dev~t~Ak~i 192 (296)
T KOG1606|consen 114 DWDHHIEKHNFKVPFV-CGCRDLGEALRRIREGAAMIRTKGEAGTGDVSEAVKHVRSINGEIRVLKNMDDDEVFTFAKEI 192 (296)
T ss_pred cccchhhhhcCcCcee-eccccHHHHHHHHhhchhhheeccccCCCcHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHh
Confidence 676 5543 4588984 57777888888888899988887654431 010 0
Q ss_pred cchHHHHHHHHHHhcCCCcE--EEecCCCCHHHHHHHHHcCCCEEEechHHHH
Q 017718 261 PATIMALEEVVKATQGRIPV--FLDGGVRRGTDVFKALALGASGIFIGRPVVY 311 (367)
Q Consensus 261 ~~~~~~l~~i~~~~~~~~~v--ia~GGI~~~~dv~kal~lGAd~V~ig~~~l~ 311 (367)
..+.+++.+..+. +++|| ++.|||.++.|++-.+.||+|+|.+|+.++.
T Consensus 193 ~aP~dLv~~t~q~--GrlPVV~FAaGGvaTPADAALmMQLGCdGVFVGSgiFk 243 (296)
T KOG1606|consen 193 AAPYDLVKQTKQL--GRLPVVNFAAGGVATPADAALMMQLGCDGVFVGSGIFK 243 (296)
T ss_pred cCcHHHHHHHHHc--CCCceEEecccCcCChhHHHHHHHcCCCeEEecccccc
Confidence 1234455555442 36776 6899999999999999999999999996654
|
|
| >PRK05581 ribulose-phosphate 3-epimerase; Validated | Back alignment and domain information |
|---|
Probab=96.84 E-value=0.034 Score=50.78 Aligned_cols=76 Identities=18% Similarity=0.279 Sum_probs=48.0
Q ss_pred HHHHHHHHHcCCcEEEEcC-C-CCCCCCCccchHHHHHHHHHHhcC---CCcEEEecCCCCHHHHHHHHHcCCCEEEech
Q 017718 233 AEDARIAVQAGAAGIIVSN-H-GARQLDYVPATIMALEEVVKATQG---RIPVFLDGGVRRGTDVFKALALGASGIFIGR 307 (367)
Q Consensus 233 ~~~a~~~~~~G~d~i~vs~-~-gg~~~~~~~~~~~~l~~i~~~~~~---~~~via~GGI~~~~dv~kal~lGAd~V~ig~ 307 (367)
.+.++. ...++|+|.+.. + |++.....+...+.+.++++.... ..+|.++|||+. +++.+++..|+|.|.+||
T Consensus 122 ~e~~~~-~~~~~d~i~~~~~~~g~tg~~~~~~~~~~i~~~~~~~~~~~~~~~i~v~GGI~~-~nv~~l~~~GaD~vvvgS 199 (220)
T PRK05581 122 LEPLED-VLDLLDLVLLMSVNPGFGGQKFIPEVLEKIRELRKLIDERGLDILIEVDGGINA-DNIKECAEAGADVFVAGS 199 (220)
T ss_pred HHHHHH-HHhhCCEEEEEEECCCCCcccccHHHHHHHHHHHHHHHhcCCCceEEEECCCCH-HHHHHHHHcCCCEEEECh
Confidence 344443 344689877643 2 222222223344555555554422 144678999999 799999999999999999
Q ss_pred HHH
Q 017718 308 PVV 310 (367)
Q Consensus 308 ~~l 310 (367)
+++
T Consensus 200 ai~ 202 (220)
T PRK05581 200 AVF 202 (220)
T ss_pred hhh
Confidence 876
|
|
| >PRK06978 nicotinate-nucleotide pyrophosphorylase; Provisional | Back alignment and domain information |
|---|
Probab=96.83 E-value=0.048 Score=52.40 Aligned_cols=76 Identities=28% Similarity=0.364 Sum_probs=59.5
Q ss_pred CCEEEEecCCHHHHHHHHHcCCcEEEEcCCCCCCCCCccchHHHHHHHHHHhcCCCcEEEecCCCCHHHHHHHHHcCCCE
Q 017718 223 LPILVKGVLTAEDARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASG 302 (367)
Q Consensus 223 ~Pv~vK~v~~~~~a~~~~~~G~d~i~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~~~via~GGI~~~~dv~kal~lGAd~ 302 (367)
.+|.| .+-+.++++.+.++|+|.|.+.| -+.+.+.++.+.+++++.+.++||| |.+.+.++..+|.|.
T Consensus 206 ~kIeV-Evetleea~eA~~aGaDiImLDn----------mspe~l~~av~~~~~~~~lEaSGGI-t~~ni~~yA~tGVD~ 273 (294)
T PRK06978 206 VPVQI-EVETLAQLETALAHGAQSVLLDN----------FTLDMMREAVRVTAGRAVLEVSGGV-NFDTVRAFAETGVDR 273 (294)
T ss_pred CcEEE-EcCCHHHHHHHHHcCCCEEEECC----------CCHHHHHHHHHhhcCCeEEEEECCC-CHHHHHHHHhcCCCE
Confidence 34433 56789999999999999999987 2345555565555567889999998 578888888899999
Q ss_pred EEechHHH
Q 017718 303 IFIGRPVV 310 (367)
Q Consensus 303 V~ig~~~l 310 (367)
+.+|.+..
T Consensus 274 IS~galth 281 (294)
T PRK06978 274 ISIGALTK 281 (294)
T ss_pred EEeCcccc
Confidence 99998553
|
|
| >TIGR01334 modD putative molybdenum utilization protein ModD | Back alignment and domain information |
|---|
Probab=96.81 E-value=0.045 Score=52.34 Aligned_cols=82 Identities=17% Similarity=0.151 Sum_probs=59.5
Q ss_pred HHHhhc-CCCEEEEecCCHHHHHHHHHcCCcEEEEcCCCCCCCCCccchHHHHHHHHHHh---cCCCcEEEecCCCCHHH
Q 017718 216 WLQTIT-KLPILVKGVLTAEDARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKAT---QGRIPVFLDGGVRRGTD 291 (367)
Q Consensus 216 ~l~~~~-~~Pv~vK~v~~~~~a~~~~~~G~d~i~vs~~gg~~~~~~~~~~~~l~~i~~~~---~~~~~via~GGI~~~~d 291 (367)
.+|+.. ..+|.| .+.+.++++.+.++|+|.|.+.| -+.+.+.++.+.+ ..++.|.++||| +.+.
T Consensus 181 ~~r~~~~~~kIeV-Ev~tleea~ea~~~GaDiI~lDn----------~~~e~l~~~v~~l~~~~~~~~leasGGI-~~~n 248 (277)
T TIGR01334 181 RLKQTAPERKITV-EADTIEQALTVLQASPDILQLDK----------FTPQQLHHLHERLKFFDHIPTLAAAGGI-NPEN 248 (277)
T ss_pred HHHHhCCCCCEEE-ECCCHHHHHHHHHcCcCEEEECC----------CCHHHHHHHHHHHhccCCCEEEEEECCC-CHHH
Confidence 555544 244433 56799999999999999999975 1222333333333 347889999998 5788
Q ss_pred HHHHHHcCCCEEEechHH
Q 017718 292 VFKALALGASGIFIGRPV 309 (367)
Q Consensus 292 v~kal~lGAd~V~ig~~~ 309 (367)
+.++..+|+|.+.+|.++
T Consensus 249 i~~ya~~GvD~is~gal~ 266 (277)
T TIGR01334 249 IADYIEAGIDLFITSAPY 266 (277)
T ss_pred HHHHHhcCCCEEEeCcce
Confidence 999999999999999863
|
The gene modD for a member of this family is found with molybdenum transport genes modABC in Rhodobacter capsulatus. However, disruption of modD causes only a 4-fold (rather than 500-fold for modA, modB, modC) change in the external molybdenum concentration required to suppress an alternative nitrogenase. ModD proteins are highly similar to nicotinate-nucleotide pyrophosphorylase (also called quinolinate phosphoribosyltransferase). The function unknown. |
| >PRK06096 molybdenum transport protein ModD; Provisional | Back alignment and domain information |
|---|
Probab=96.80 E-value=0.061 Score=51.59 Aligned_cols=148 Identities=14% Similarity=0.039 Sum_probs=86.8
Q ss_pred HHHHHHHHHHHcCCcEEEEecCCCCCCchhHHh---hhhcCCCCccccccccccccCccccccchhhHHHhhhccC-ccc
Q 017718 137 VVAQLVRRAERAGFKAIALTVDTPRLGRREADI---KNRFTLPPFLTLKNFQGLDLGKMDEANDSGLAAYVAGQID-RSL 212 (367)
Q Consensus 137 ~~~~~l~ra~~~G~~ai~itvd~p~~g~r~~~~---~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d-~~~ 212 (367)
.+.++++.+++.+.+.-++.--...+|.|.-+. +.|...+.++.... .+ + ---.|+.-... ..+
T Consensus 109 ~T~~~V~~~~~~~~~~~I~~TRKT~Pg~R~l~k~AV~~GGg~~HR~gLsd--~v----L------ikdNHi~~~g~~~~i 176 (284)
T PRK06096 109 YLAQMLALLRERYPDGNIACTRKAIPGTRLLATQAVLAAGGLIHRAGCAE--TI----L------LFANHRHFLHDPQDW 176 (284)
T ss_pred HHHHHHHHHHhhCCCcEEEecCcCCCchhHHHHHHHHcCCCcCccCCcch--hh----h------hHHHHHHHhCCcccH
Confidence 456777777777777777766666677776222 22322222111100 00 0 00011111000 011
Q ss_pred --cHHHHHhhcC-CCEEEEecCCHHHHHHHHHcCCcEEEEcCCCCCCCCCccchHHHHHHHHHHh---cCCCcEEEecCC
Q 017718 213 --SWKWLQTITK-LPILVKGVLTAEDARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKAT---QGRIPVFLDGGV 286 (367)
Q Consensus 213 --~~~~l~~~~~-~Pv~vK~v~~~~~a~~~~~~G~d~i~vs~~gg~~~~~~~~~~~~l~~i~~~~---~~~~~via~GGI 286 (367)
..+.+|+..+ .+| .=.+.+.++++.+.++|+|.|.+.| . +.+.+.++.+.+ ..++.+-++|||
T Consensus 177 ~~av~~~r~~~~~~kI-eVEv~tleqa~ea~~agaDiI~LDn-------~---~~e~l~~av~~~~~~~~~~~leaSGGI 245 (284)
T PRK06096 177 SGAINQLRRHAPEKKI-VVEADTPKEAIAALRAQPDVLQLDK-------F---SPQQATEIAQIAPSLAPHCTLSLAGGI 245 (284)
T ss_pred HHHHHHHHHhCCCCCE-EEECCCHHHHHHHHHcCCCEEEECC-------C---CHHHHHHHHHHhhccCCCeEEEEECCC
Confidence 1225555443 343 4466899999999999999999976 1 233344444433 247889999998
Q ss_pred CCHHHHHHHHHcCCCEEEechH
Q 017718 287 RRGTDVFKALALGASGIFIGRP 308 (367)
Q Consensus 287 ~~~~dv~kal~lGAd~V~ig~~ 308 (367)
|.+.+.++..+|+|.+.+|.+
T Consensus 246 -~~~ni~~yA~tGvD~Is~gal 266 (284)
T PRK06096 246 -NLNTLKNYADCGIRLFITSAP 266 (284)
T ss_pred -CHHHHHHHHhcCCCEEEECcc
Confidence 578899899999999998875
|
|
| >PRK11750 gltB glutamate synthase subunit alpha; Provisional | Back alignment and domain information |
|---|
Probab=96.77 E-value=0.012 Score=66.76 Aligned_cols=120 Identities=13% Similarity=0.164 Sum_probs=86.3
Q ss_pred HHHHHHHHcCCcEEEEcCCCCCCCCCccchHHHHHHHHHHh-----cCCCcEEE-ecCCCCHHHHHHHHHcCCCEEEech
Q 017718 234 EDARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKAT-----QGRIPVFL-DGGVRRGTDVFKALALGASGIFIGR 307 (367)
Q Consensus 234 ~~a~~~~~~G~d~i~vs~~gg~~~~~~~~~~~~l~~i~~~~-----~~~~~via-~GGI~~~~dv~kal~lGAd~V~ig~ 307 (367)
+.|..+++.|+..|++|..+-..-....|.+-++..+.+.+ +.++.||+ +|.+++.-|++..+.+||++|.-.-
T Consensus 601 ~~A~~Av~~G~~ilILSDr~~~~~~~~IP~LLAv~aVH~hLir~glR~~vsLIveSGe~RevHhfA~LiGyGA~AV~PYL 680 (1485)
T PRK11750 601 DEAEQAVRDGTVLLVLSDRNIAKGRLPIPAAMAVGAVQHRLVDKGLRCDANIIVETASARDPHHFAVLLGFGATAVYPYL 680 (1485)
T ss_pred HHHHHHHHCCCeEEEEcCCCCCCCcCCcCHHHHHHHHHHHHHHcCCcceeeEEEecCCcCCHHHHHHHHhcChhhhhhHH
Confidence 34778899999999999865321112334444444444433 44788888 8999999999999999999995443
Q ss_pred HHH--HHhhccC------hHHHHHHHHHHHHHHHHHHHHhCCCChhhhccccee
Q 017718 308 PVV--YSLAAEG------EKGVRRVLEMLREEFELAMALSGCRSLKEITRDHIV 353 (367)
Q Consensus 308 ~~l--~~l~~~G------~~~v~~~i~~l~~el~~~m~~~G~~si~~l~~~~l~ 353 (367)
++- ..+...| .+.+.+++..+.++|...|..+|.++++.-++.-+.
T Consensus 681 A~eti~~l~~~g~l~~~~~~a~~ny~~A~~kGLlKImsKMGIStl~SY~gaqiF 734 (1485)
T PRK11750 681 AYETLGDLVDTGEILKDYRQVMLNYRKGINKGLYKIMSKMGISTIASYRGSQLF 734 (1485)
T ss_pred HHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHHHHHHHhhcchhhHHhcCCcccc
Confidence 331 1111223 356889999999999999999999999988876553
|
|
| >PLN02446 (5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase | Back alignment and domain information |
|---|
Probab=96.77 E-value=0.0069 Score=57.25 Aligned_cols=76 Identities=16% Similarity=0.169 Sum_probs=58.0
Q ss_pred CHHH-HHHHHHcCCcEEEEcCCCCCCCCCccchHHHHHHHHHHhcCCCcEEEecCCCCHHHHHHHHHcC--CCEEEechH
Q 017718 232 TAED-ARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALG--ASGIFIGRP 308 (367)
Q Consensus 232 ~~~~-a~~~~~~G~d~i~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~~~via~GGI~~~~dv~kal~lG--Ad~V~ig~~ 308 (367)
++.+ +....+.|+..|++..-..-.. ..-+.++.+.++.+.+ ++|||++|||++-+|+.+...+| ...|.+|++
T Consensus 164 ~~~e~~~~~~~~g~~eii~TdI~rDGt-l~G~d~el~~~l~~~~--~ipVIASGGv~sleDi~~L~~~g~g~~gvIvGkA 240 (262)
T PLN02446 164 AVDEETLEFLAAYCDEFLVHGVDVEGK-RLGIDEELVALLGEHS--PIPVTYAGGVRSLDDLERVKVAGGGRVDVTVGSA 240 (262)
T ss_pred CHHHHHHHHHHhCCCEEEEEEEcCCCc-ccCCCHHHHHHHHhhC--CCCEEEECCCCCHHHHHHHHHcCCCCEEEEEEee
Confidence 4455 6888999999999864211001 1224678888888876 89999999999999999999884 688999998
Q ss_pred HH
Q 017718 309 VV 310 (367)
Q Consensus 309 ~l 310 (367)
+.
T Consensus 241 l~ 242 (262)
T PLN02446 241 LD 242 (262)
T ss_pred HH
Confidence 74
|
|
| >TIGR01919 hisA-trpF 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase/N-(5'phosphoribosyl)anthranilate isomerase | Back alignment and domain information |
|---|
Probab=96.77 E-value=0.0085 Score=56.24 Aligned_cols=73 Identities=29% Similarity=0.202 Sum_probs=57.9
Q ss_pred HHHHHHHHcCCcEEEEcCCCCCCCCCccchHHHHHHHHHHhcCCCcEEEecCCCCHHHHHHHHHcCCCEEEechHHH
Q 017718 234 EDARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFIGRPVV 310 (367)
Q Consensus 234 ~~a~~~~~~G~d~i~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~~~via~GGI~~~~dv~kal~lGAd~V~ig~~~l 310 (367)
+.++...+.|++.+.+..--+. .+.+...+.+.++.+.+ .+|+.+.|||+|.+|+.+++.+||+-|.+||..+
T Consensus 35 ~~a~~~~~~g~~~lhivDLd~a--~g~~~n~~~i~~i~~~~--~~~v~vgGGIrs~e~~~~~l~~Ga~~vvigT~a~ 107 (243)
T TIGR01919 35 SAAKWWEQGGAEWIHLVDLDAA--FGGGNNEMMLEEVVKLL--VVVEELSGGRRDDSSLRAALTGGRARVNGGTAAL 107 (243)
T ss_pred HHHHHHHhCCCeEEEEEECCCC--CCCcchHHHHHHHHHHC--CCCEEEcCCCCCHHHHHHHHHcCCCEEEECchhh
Confidence 4466678889888877532111 14456788899998877 6899999999999999999999999999999654
|
This model represents a bifunctional protein posessing both hisA (1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase) and trpF (N-(5'phosphoribosyl)anthranilate isomerase) activities. Thus, it is involved in both the histidine and tryptophan biosynthetic pathways. Enzymes with this property have been described only in the Actinobacteria (High-GC gram-positive). The enzyme is closely related to the monofunctional HisA proteins (TIGR00007) and in Actinobacteria, the classical monofunctional TrpF is generally absent. |
| >TIGR01768 GGGP-family geranylgeranylglyceryl phosphate synthase family protein | Back alignment and domain information |
|---|
Probab=96.76 E-value=0.0089 Score=55.23 Aligned_cols=66 Identities=21% Similarity=0.262 Sum_probs=50.9
Q ss_pred cCCcEEEEcCCCCCCCCCccchHHHHHHHHHHhcCCCcEEEecCCCCHHHHHHHHHcCCCEEEechHHHH
Q 017718 242 AGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFIGRPVVY 311 (367)
Q Consensus 242 ~G~d~i~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~~~via~GGI~~~~dv~kal~lGAd~V~ig~~~l~ 311 (367)
.|...+.+-..||. +.+...+.+..+++.++ ++||+..||||+.+++.+++.+|||.|.+|+.+..
T Consensus 148 ~g~~~vYlE~gs~~---g~~v~~e~i~~v~~~~~-~~pl~vGGGIrs~e~a~~l~~aGAD~VVVGs~~~~ 213 (223)
T TIGR01768 148 LGMPIIYLEAGSGA---PEPVPPELVAEVKKVLD-KARLFVGGGIRSVEKAREMAEAGADTIVTGNVIEE 213 (223)
T ss_pred cCCcEEEEEecCCC---CCCcCHHHHHHHHHHcC-CCCEEEecCCCCHHHHHHHHHcCCCEEEECcHHhh
Confidence 57777777432332 33445777888877653 69999999999999999999999999999997753
|
This model represents a family of sequences including geranylgeranylglyceryl phosphate synthase which catalyzes the first committed step in the synthesis of ether-linked membrane lipids in archaea. The clade of bacterial sequences may have the same function or a closely related function. This model supercedes TIGR00265, which has been retired. |
| >PRK12595 bifunctional 3-deoxy-7-phosphoheptulonate synthase/chorismate mutase; Reviewed | Back alignment and domain information |
|---|
Probab=96.73 E-value=0.28 Score=48.75 Aligned_cols=205 Identities=22% Similarity=0.284 Sum_probs=110.3
Q ss_pred CCCCCccceeEcCeeec--cc-eEeCcccchhccCChhhHHHHHHHHHcCCceeecC-CCCCCHHHHHhhCCCceEEEEe
Q 017718 55 DVSKIDMNTTVLGFKIS--MP-IMIAPTAMQKMAHPEGEYATARAASAAGTIMTLSS-WSTSSVEEVASTGPGIRFFQLY 130 (367)
Q Consensus 55 ~~~~vd~st~i~g~~l~--~P-i~iAPm~~~~l~~~~~e~~~a~aa~~~G~~~~vs~-~~~~~~e~i~~~~~~~~~~QLy 130 (367)
+...-|+.+.+.+..+. .| +++.|... -..+.-..+|+.+++.|+.+.... +.. .. .|+.||
T Consensus 99 ~~~~~~~~~~~~~~~~g~~~~~~iaGpc~i---E~~~~~~~~A~~lk~~g~~~~r~~~~kp-------Rt--sp~~f~-- 164 (360)
T PRK12595 99 KKKPEDTIVDVKGEVIGDGNQSFIFGPCSV---ESYEQVEAVAKALKAKGLKLLRGGAFKP-------RT--SPYDFQ-- 164 (360)
T ss_pred ccCCCCCEEEECCEEecCCCeeeEEecccc---cCHHHHHHHHHHHHHcCCcEEEccccCC-------CC--CCcccc--
Confidence 33344555555554442 34 45556322 223334578888999998887632 111 11 344555
Q ss_pred ecCCHHHHHHHHHHHHHcCCcEEEEecCCCCCCchhHHhhhhcCCCCccccccccccccCccccccchhhHHHhhhccCc
Q 017718 131 VYKDRNVVAQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLTLKNFQGLDLGKMDEANDSGLAAYVAGQIDR 210 (367)
Q Consensus 131 ~~~d~~~~~~~l~ra~~~G~~ai~itvd~p~~g~r~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~ 210 (367)
+-..+....+.+.+++.|...+. ++-.+ +.-+....+ .+- +. -+..
T Consensus 165 -g~~~e~l~~L~~~~~~~Gl~~~t-~v~d~----~~~~~l~~~-vd~-lk--------------------------I~s~ 210 (360)
T PRK12595 165 -GLGVEGLKILKQVADEYGLAVIS-EIVNP----ADVEVALDY-VDV-IQ--------------------------IGAR 210 (360)
T ss_pred -CCCHHHHHHHHHHHHHcCCCEEE-eeCCH----HHHHHHHHh-CCe-EE--------------------------ECcc
Confidence 33446666677778888877653 22111 111111111 000 00 0001
Q ss_pred cc-cHHHHH--hhcCCCEEEEecC--CHHH----HHHHHHcCCcEEEEcCCCCCCCC---CccchHHHHHHHHHHhcCCC
Q 017718 211 SL-SWKWLQ--TITKLPILVKGVL--TAED----ARIAVQAGAAGIIVSNHGARQLD---YVPATIMALEEVVKATQGRI 278 (367)
Q Consensus 211 ~~-~~~~l~--~~~~~Pv~vK~v~--~~~~----a~~~~~~G~d~i~vs~~gg~~~~---~~~~~~~~l~~i~~~~~~~~ 278 (367)
.. ++..|+ ..+++||++|..+ +.++ ++.+.+.|.+-|++--+|=+... .....+..++.+++.. .+
T Consensus 211 ~~~n~~LL~~~a~~gkPVilk~G~~~t~~e~~~Ave~i~~~Gn~~i~L~erg~s~yp~~~~~~ldl~~i~~lk~~~--~~ 288 (360)
T PRK12595 211 NMQNFELLKAAGRVNKPVLLKRGLSATIEEFIYAAEYIMSQGNGQIILCERGIRTYEKATRNTLDISAVPILKQET--HL 288 (360)
T ss_pred cccCHHHHHHHHccCCcEEEeCCCCCCHHHHHHHHHHHHHCCCCCEEEECCccCCCCCCCCCCcCHHHHHHHHHHh--CC
Confidence 11 233222 2358999999875 6665 45666788866666433433222 1123667788777755 68
Q ss_pred cEEEecCCCCH----H--HHHHHHHcCCCEEEechHH
Q 017718 279 PVFLDGGVRRG----T--DVFKALALGASGIFIGRPV 309 (367)
Q Consensus 279 ~via~GGI~~~----~--dv~kal~lGAd~V~ig~~~ 309 (367)
||+.|.+=..| . -...|+++|||+++|-+-+
T Consensus 289 PV~~d~~Hs~G~r~~~~~~a~aAva~GAdg~~iE~H~ 325 (360)
T PRK12595 289 PVMVDVTHSTGRRDLLLPTAKAALAIGADGVMAEVHP 325 (360)
T ss_pred CEEEeCCCCCcchhhHHHHHHHHHHcCCCeEEEEecC
Confidence 99996442222 2 3445788999999999866
|
|
| >PLN02446 (5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase | Back alignment and domain information |
|---|
Probab=96.73 E-value=0.0073 Score=57.08 Aligned_cols=71 Identities=27% Similarity=0.219 Sum_probs=58.3
Q ss_pred HHHHHHHHHcCCcEEEEcCCCCCCCCCccchHHHHHHHHHHhcCCCcEEEecCCCCHHHHHHHHHcCCCEEEechHHHH
Q 017718 233 AEDARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFIGRPVVY 311 (367)
Q Consensus 233 ~~~a~~~~~~G~d~i~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~~~via~GGI~~~~dv~kal~lGAd~V~ig~~~l~ 311 (367)
.+.|+...+.|++.+.|-.=+| +.+...+.+.+|++ + .+||-.-||||+ +++.++|.+||+-|.|||..+-
T Consensus 46 ~~~A~~~~~~Ga~~lHvVDLdg----g~~~n~~~i~~i~~-~--~~~vqvGGGIR~-e~i~~~l~~Ga~rViigT~Av~ 116 (262)
T PLN02446 46 AEFAEMYKRDGLTGGHVIMLGA----DDASLAAALEALRA-Y--PGGLQVGGGVNS-ENAMSYLDAGASHVIVTSYVFR 116 (262)
T ss_pred HHHHHHHHHCCCCEEEEEECCC----CCcccHHHHHHHHh-C--CCCEEEeCCccH-HHHHHHHHcCCCEEEEchHHHh
Confidence 4779999999999998754222 23456788888887 6 599999999996 9999999999999999997653
|
|
| >TIGR00343 pyridoxal 5'-phosphate synthase, synthase subunit Pdx1 | Back alignment and domain information |
|---|
Probab=96.73 E-value=0.023 Score=54.07 Aligned_cols=81 Identities=19% Similarity=0.111 Sum_probs=59.6
Q ss_pred cHHHHHhhcCCCEEEEec-CCHHHHHHHHHcCCcEEEEcCCCCCCCCCccchHHHHHHHHHHhcCCCcEEEecCCCCHHH
Q 017718 213 SWKWLQTITKLPILVKGV-LTAEDARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTD 291 (367)
Q Consensus 213 ~~~~l~~~~~~Pv~vK~v-~~~~~a~~~~~~G~d~i~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~~~via~GGI~~~~d 291 (367)
+++.+++.+++||+-|.. ....+|+.+.++|+|.|.-|..- .|..+.+..++... ++|+ ..|++|-++
T Consensus 58 ~I~~I~~~V~iPVig~~kigh~~Ea~~L~~~GvDiIDeTe~l-------rPade~~~~~K~~f--~vpf--mad~~~l~E 126 (287)
T TIGR00343 58 MIKEIMDAVSIPVMAKVRIGHFVEAQILEALGVDYIDESEVL-------TPADWTFHIDKKKF--KVPF--VCGARDLGE 126 (287)
T ss_pred HHHHHHHhCCCCEEEEeeccHHHHHHHHHHcCCCEEEccCCC-------CcHHHHHHHHHHHc--CCCE--EccCCCHHH
Confidence 456888999999999876 44789999999999999643211 12344444444433 4444 457999999
Q ss_pred HHHHHHcCCCEEE
Q 017718 292 VFKALALGASGIF 304 (367)
Q Consensus 292 v~kal~lGAd~V~ 304 (367)
++.++.+|||.|.
T Consensus 127 Alrai~~GadmI~ 139 (287)
T TIGR00343 127 ALRRINEGAAMIR 139 (287)
T ss_pred HHHHHHCCCCEEe
Confidence 9999999999773
|
This protein had been believed to be a singlet oxygen resistance protein. Subsequent work showed that it is a protein of pyridoxine (vitamin B6) biosynthesis, and that pyridoxine quenches the highly toxic singlet form of oxygen produced by light in the presence of certain chemicals. |
| >COG0036 Rpe Pentose-5-phosphate-3-epimerase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=96.73 E-value=0.074 Score=48.87 Aligned_cols=153 Identities=22% Similarity=0.304 Sum_probs=90.1
Q ss_pred cCCHHHHHHHHHHHHHcCCcEEEEecCCCCCCchhHHhhhhcCCCCccccccccccccCccccccchhhHHHhhhccCcc
Q 017718 132 YKDRNVVAQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLTLKNFQGLDLGKMDEANDSGLAAYVAGQIDRS 211 (367)
Q Consensus 132 ~~d~~~~~~~l~ra~~~G~~ai~itvd~p~~g~r~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~ 211 (367)
..|.....+.+++.+++|++.+ ++|. +-..| .+|+. + ..
T Consensus 12 saD~~~l~~el~~~~~agad~i--H~DV---------MDghF-------VPNiT---f--------------------Gp 50 (220)
T COG0036 12 SADFARLGEELKALEAAGADLI--HIDV---------MDGHF-------VPNIT---F--------------------GP 50 (220)
T ss_pred hCCHhHHHHHHHHHHHcCCCEE--EEec---------cCCCc-------CCCcc---c--------------------CH
Confidence 5677888899999999999976 4452 00111 11110 0 00
Q ss_pred ccHHHHHhhcCCCEEEEec-CCHHH-HHHHHHcCCcEEEEcCC---------------C---------CCC---------
Q 017718 212 LSWKWLQTITKLPILVKGV-LTAED-ARIAVQAGAAGIIVSNH---------------G---------ARQ--------- 256 (367)
Q Consensus 212 ~~~~~l~~~~~~Pv~vK~v-~~~~~-a~~~~~~G~d~i~vs~~---------------g---------g~~--------- 256 (367)
...+++|+.++.|+=+=.- .+++. .....++|+|.|.++-. | +|.
T Consensus 51 ~~v~~l~~~t~~p~DvHLMV~~p~~~i~~fa~agad~It~H~E~~~~~~r~i~~Ik~~G~kaGv~lnP~Tp~~~i~~~l~ 130 (220)
T COG0036 51 PVVKALRKITDLPLDVHLMVENPDRYIEAFAKAGADIITFHAEATEHIHRTIQLIKELGVKAGLVLNPATPLEALEPVLD 130 (220)
T ss_pred HHHHHHhhcCCCceEEEEecCCHHHHHHHHHHhCCCEEEEEeccCcCHHHHHHHHHHcCCeEEEEECCCCCHHHHHHHHh
Confidence 0123677766677655543 34433 66777888888887431 0 010
Q ss_pred -C-----------CCc----cchHHHHHHHHHHhcC--CCcEEEecCCCCHHHHHHHHHcCCCEEEechHHHHHhhccCh
Q 017718 257 -L-----------DYV----PATIMALEEVVKATQG--RIPVFLDGGVRRGTDVFKALALGASGIFIGRPVVYSLAAEGE 318 (367)
Q Consensus 257 -~-----------~~~----~~~~~~l~~i~~~~~~--~~~via~GGI~~~~dv~kal~lGAd~V~ig~~~l~~l~~~G~ 318 (367)
. .+| +..++-++++++.... ++-|-+||||.. +.+-++.++|||.+..|| .+|. +.
T Consensus 131 ~vD~VllMsVnPGfgGQ~Fi~~~l~Ki~~lr~~~~~~~~~~IeVDGGI~~-~t~~~~~~AGad~~VaGS-alF~----~~ 204 (220)
T COG0036 131 DVDLVLLMSVNPGFGGQKFIPEVLEKIRELRAMIDERLDILIEVDGGINL-ETIKQLAAAGADVFVAGS-ALFG----AD 204 (220)
T ss_pred hCCEEEEEeECCCCcccccCHHHHHHHHHHHHHhcccCCeEEEEeCCcCH-HHHHHHHHcCCCEEEEEE-EEeC----Cc
Confidence 0 122 3455666666665542 567889999964 557777779999999999 5553 22
Q ss_pred HHHHHHHHHHHHHH
Q 017718 319 KGVRRVLEMLREEF 332 (367)
Q Consensus 319 ~~v~~~i~~l~~el 332 (367)
+ ....++.++.++
T Consensus 205 d-~~~~i~~~~~~~ 217 (220)
T COG0036 205 D-YKATIRELRGEL 217 (220)
T ss_pred c-HHHHHHHHHHHh
Confidence 2 444555555543
|
|
| >PF04898 Glu_syn_central: Glutamate synthase central domain; InterPro: IPR006982 Glutamate synthase (GltS)1 is a key enzyme in the early stages of the assimilation of ammonia in bacteria, yeasts, and plants | Back alignment and domain information |
|---|
Probab=96.71 E-value=0.016 Score=55.39 Aligned_cols=120 Identities=22% Similarity=0.284 Sum_probs=75.7
Q ss_pred HHHHHHHHcCCcEEEEcCCCCCCCCCccchHHHHHHHHHHh-----cCCCcEEE-ecCCCCHHHHHHHHHcCCCEEEech
Q 017718 234 EDARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKAT-----QGRIPVFL-DGGVRRGTDVFKALALGASGIFIGR 307 (367)
Q Consensus 234 ~~a~~~~~~G~d~i~vs~~gg~~~~~~~~~~~~l~~i~~~~-----~~~~~via-~GGI~~~~dv~kal~lGAd~V~ig~ 307 (367)
++|..+++.|+..|++|..+-..-....+.+-++..+.+++ +.++.||+ +|-+|+.-|++-.+..|||+|.=.-
T Consensus 146 ~ea~~Av~~G~~ilILsDr~~~~~~~~IP~lLAv~avh~~Li~~glR~~~slIvesge~re~Hh~a~LlGyGA~AV~PYl 225 (287)
T PF04898_consen 146 EEAEAAVREGANILILSDRNASPDRAPIPSLLAVSAVHHHLIREGLRTRVSLIVESGEAREVHHFATLLGYGADAVNPYL 225 (287)
T ss_dssp HHHHHHHHCT-SEEEEESTC-CTTEEE--HHHHHHHHHHHHHCTT-CCC-EEEEEESS--SHHHHHHHHCTT-SEEEEHC
T ss_pred HHHHHHHHcCCcEEEECCCCCCcCcccccHHHHHHHHHHHHHHcCCcceeeEEEecCCcccHHHHHHHHcCCHhhhcHHH
Confidence 45788999999999998755221111233444444444443 34677777 7889999999999999999985322
Q ss_pred HH--HHHhhccC-------hHHHHHHHHHHHHHHHHHHHHhCCCChhhhccccee
Q 017718 308 PV--VYSLAAEG-------EKGVRRVLEMLREEFELAMALSGCRSLKEITRDHIV 353 (367)
Q Consensus 308 ~~--l~~l~~~G-------~~~v~~~i~~l~~el~~~m~~~G~~si~~l~~~~l~ 353 (367)
+| +..+...| ++.+.+++..+.+.|...|..+|.+.++.-++.-+.
T Consensus 226 a~e~~~~~~~~~~~~~~~~~~~~~ny~~a~~kGllKimSKMGIstl~SY~gaqiF 280 (287)
T PF04898_consen 226 AYETIRELAERGELPELSPEEAIKNYRKALEKGLLKIMSKMGISTLQSYRGAQIF 280 (287)
T ss_dssp CHHHHHHCCCCCCCCT--HHHHHHHHHHHHHHHHHHHHHCTT--BHHHHCCS--E
T ss_pred HHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHHHHHHHHhcChHHhhhcccceee
Confidence 22 22222223 357889999999999999999999999988776553
|
In bacteria, L-glutamate is involved in osmoregulation, is the precursor for other amino acids, and can be the precursor for haem biosynthesis. In plants, GltS is especially essential in the reassimilation of ammonia released by photorespiration. On the basis of the amino acid sequence and the nature of the electron donor, three different classes of GltS can de defined as follows: 1) ferredoxin-dependent GltS (Fd-GltS), 2) NADPH-dependent GltS (NADPH-GltS), and 3) NADH-dependent GltS (properties of the three classes have been reviewed extensively []). The enzyme is a complex iron-sulphur flavoprotein catalysing the reductive transfer of the amido nitrogen from L-glutamine to 2-oxoglutarate to form two molecules of L-glutamate via intramolecular channelling of ammonia from the amidotransferase domain to the FMN-binding domain. Reaction of amidotransferase domain: |
| >PLN02898 HMP-P kinase/thiamin-monophosphate pyrophosphorylase | Back alignment and domain information |
|---|
Probab=96.66 E-value=0.029 Score=58.10 Aligned_cols=93 Identities=19% Similarity=0.221 Sum_probs=65.1
Q ss_pred HHHhhcCCCEEEEe-cCCHHHHHHHHHcCCcEEEEcCCCCCC-C-CCccchHHHHHHHHHHhcCCCcEEEecCCCCHHHH
Q 017718 216 WLQTITKLPILVKG-VLTAEDARIAVQAGAAGIIVSNHGARQ-L-DYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDV 292 (367)
Q Consensus 216 ~l~~~~~~Pv~vK~-v~~~~~a~~~~~~G~d~i~vs~~gg~~-~-~~~~~~~~~l~~i~~~~~~~~~via~GGI~~~~dv 292 (367)
..|+..+-..++.. +.+.+++..+.+.|+|+|.++--..+. . +..+.-++.+.++.+.. ++||++-|||. .+++
T Consensus 382 ~~r~~~~~~~~iG~S~h~~~e~~~a~~~gadyi~~gpif~t~tk~~~~~~g~~~~~~~~~~~--~~Pv~aiGGI~-~~~~ 458 (502)
T PLN02898 382 LARSLLGPGKIIGVSCKTPEQAEQAWKDGADYIGCGGVFPTNTKANNKTIGLDGLREVCEAS--KLPVVAIGGIS-ASNA 458 (502)
T ss_pred HHHHhcCCCCEEEEeCCCHHHHHHHhhcCCCEEEECCeecCCCCCCCCCCCHHHHHHHHHcC--CCCEEEECCCC-HHHH
Confidence 44544432233333 467899999999999999875321111 1 11122467777776654 79999999995 8999
Q ss_pred HHHHHcCCC---EEEechHHHH
Q 017718 293 FKALALGAS---GIFIGRPVVY 311 (367)
Q Consensus 293 ~kal~lGAd---~V~ig~~~l~ 311 (367)
.+.+.+||+ +|.+++.++-
T Consensus 459 ~~~~~~G~~~~~gvav~~~i~~ 480 (502)
T PLN02898 459 ASVMESGAPNLKGVAVVSALFD 480 (502)
T ss_pred HHHHHcCCCcCceEEEEeHHhc
Confidence 999999999 9999998863
|
|
| >PRK07315 fructose-bisphosphate aldolase; Provisional | Back alignment and domain information |
|---|
Probab=96.65 E-value=0.041 Score=53.09 Aligned_cols=79 Identities=23% Similarity=0.400 Sum_probs=62.9
Q ss_pred CCHHHHHHHHHcCCcEEEEc--C-CCCCCCCCccchHHHHHHHHHHhcCCCcEEEecC--CCCHHHHHHHHHcCCCEEEe
Q 017718 231 LTAEDARIAVQAGAAGIIVS--N-HGARQLDYVPATIMALEEVVKATQGRIPVFLDGG--VRRGTDVFKALALGASGIFI 305 (367)
Q Consensus 231 ~~~~~a~~~~~~G~d~i~vs--~-~gg~~~~~~~~~~~~l~~i~~~~~~~~~via~GG--I~~~~dv~kal~lGAd~V~i 305 (367)
.++++|+.+.+.|+|+|-++ + ||-+.-....-.++.|.+|.+.+. ++|+++-|| |. .+++.+++..|++.|-+
T Consensus 154 t~peea~~f~~tgvD~LAv~iG~vHG~y~t~~k~l~~e~L~~i~~~~~-~iPlVlhGGSGi~-~e~~~~~i~~Gi~KiNv 231 (293)
T PRK07315 154 APIEDAKAMVETGIDFLAAGIGNIHGPYPENWEGLDLDHLEKLTEAVP-GFPIVLHGGSGIP-DDQIQEAIKLGVAKVNV 231 (293)
T ss_pred CCHHHHHHHHHcCCCEEeeccccccccCCCCCCcCCHHHHHHHHHhcc-CCCEEEECCCCCC-HHHHHHHHHcCCCEEEE
Confidence 57899999999999999998 3 564421122356888999988772 499999998 64 47899999999999999
Q ss_pred chHHHH
Q 017718 306 GRPVVY 311 (367)
Q Consensus 306 g~~~l~ 311 (367)
+|.+..
T Consensus 232 ~T~i~~ 237 (293)
T PRK07315 232 NTECQI 237 (293)
T ss_pred ccHHHH
Confidence 998764
|
|
| >PRK07998 gatY putative fructose-1,6-bisphosphate aldolase; Reviewed | Back alignment and domain information |
|---|
Probab=96.65 E-value=0.33 Score=46.55 Aligned_cols=107 Identities=13% Similarity=0.220 Sum_probs=75.7
Q ss_pred CCHHHHHHH-HHcCCcEEEEcC---CCCCCCCCccc-hHHHHHHHHHHhcCCCcEEEecCCCCH-HHHHHHHHcCCCEEE
Q 017718 231 LTAEDARIA-VQAGAAGIIVSN---HGARQLDYVPA-TIMALEEVVKATQGRIPVFLDGGVRRG-TDVFKALALGASGIF 304 (367)
Q Consensus 231 ~~~~~a~~~-~~~G~d~i~vs~---~gg~~~~~~~~-~~~~l~~i~~~~~~~~~via~GGI~~~-~dv~kal~lGAd~V~ 304 (367)
.++++|... .+.|+|.+-++. ||-+ .+|. .++.|.+|.+.+ ++|+..-||=..+ +++.+++.+|..-|-
T Consensus 153 T~pe~a~~Fv~~TgvD~LAvaiGt~HG~Y---~~p~l~~~~l~~I~~~~--~vPLVlHGgSG~~~e~~~~ai~~Gi~KiN 227 (283)
T PRK07998 153 TEPEKVKDFVERTGCDMLAVSIGNVHGLE---DIPRIDIPLLKRIAEVS--PVPLVIHGGSGIPPEILRSFVNYKVAKVN 227 (283)
T ss_pred CCHHHHHHHHHHhCcCeeehhccccccCC---CCCCcCHHHHHHHHhhC--CCCEEEeCCCCCCHHHHHHHHHcCCcEEE
Confidence 577877665 479999999875 5543 2332 578999998877 8999998887666 677789999999999
Q ss_pred echHHHHHhhc-------cCh------HHHHHHHHHHHHHHHHHHHHhCCC
Q 017718 305 IGRPVVYSLAA-------EGE------KGVRRVLEMLREEFELAMALSGCR 342 (367)
Q Consensus 305 ig~~~l~~l~~-------~G~------~~v~~~i~~l~~el~~~m~~~G~~ 342 (367)
++|-+..+... ..+ .-.....+.+++..+..|+.+|..
T Consensus 228 i~Tel~~a~~~~~~~~l~~~~~~~d~~~~~~~~~~~~~~~v~~~i~~~gs~ 278 (283)
T PRK07998 228 IASDLRKAFITTVGKAYVNNHNEANLARVMAKAKQAVEEDVYSKIKMMNSN 278 (283)
T ss_pred ECHHHHHHHHHHHHHHHHhCcCcCCHHHHHHHHHHHHHHHHHHHHHHhCCC
Confidence 99976543210 010 113344466777788888888854
|
|
| >PF09370 TIM-br_sig_trns: TIM-barrel signal transduction protein; InterPro: IPR009215 Members of this family are predicted to have a TIM barrel fold, based on PSI-BLAST analysis (iteration 4) and on SCOP prediction (using SMART) | Back alignment and domain information |
|---|
Probab=96.63 E-value=0.09 Score=49.59 Aligned_cols=194 Identities=15% Similarity=0.180 Sum_probs=93.9
Q ss_pred cceEeCcccchhccCChhhHHHHHHHHHcCCceeecCC---------CCC--------C----H---HHHHhhCC-CceE
Q 017718 72 MPIMIAPTAMQKMAHPEGEYATARAASAAGTIMTLSSW---------STS--------S----V---EEVASTGP-GIRF 126 (367)
Q Consensus 72 ~Pi~iAPm~~~~l~~~~~e~~~a~aa~~~G~~~~vs~~---------~~~--------~----~---e~i~~~~~-~~~~ 126 (367)
.||+-+..|. + -.|+.+.+.|+.+.+.-. ++. + . +||....+ .|.+
T Consensus 15 ~pIig~gaGt-G--------lsAk~ae~gGaDlI~~ynsGrfR~~G~~SlagllpygnaN~iv~em~~eiLp~v~~tPVi 85 (268)
T PF09370_consen 15 KPIIGAGAGT-G--------LSAKCAEKGGADLILIYNSGRFRMAGRGSLAGLLPYGNANEIVMEMAREILPVVKDTPVI 85 (268)
T ss_dssp --EEEEEESS-H--------HHHHHHHHTT-SEEEE-HHHHHHHTT--GGGGGBTEEEHHHHHHHHHHHHGGG-SSS-EE
T ss_pred CceEEEeecc-c--------hhhHHHHhcCCCEEEEecchhHhhCCCcchhhhhcccCHhHHHHHHHHhhhhhccCCCEE
Confidence 4766665432 2 489999999999886311 111 0 1 23333333 5778
Q ss_pred EEEeecCCHHHHHHHHHHHHHcCCcEEEEecCCCCCCchhHHhhhhcCCCCccccccccccccCccccccchhhHHHhhh
Q 017718 127 FQLYVYKDRNVVAQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLTLKNFQGLDLGKMDEANDSGLAAYVAG 206 (367)
Q Consensus 127 ~QLy~~~d~~~~~~~l~ra~~~G~~ai~itvd~p~~g~r~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 206 (367)
+-+......-.+...+++.++.||..+. |.|..|.=.-..|+ .+..
T Consensus 86 aGv~atDP~~~~~~fl~~lk~~Gf~GV~---NfPTvgliDG~fR~-------------------------------~LEe 131 (268)
T PF09370_consen 86 AGVCATDPFRDMDRFLDELKELGFSGVQ---NFPTVGLIDGQFRQ-------------------------------NLEE 131 (268)
T ss_dssp EEE-TT-TT--HHHHHHHHHHHT-SEEE---E-S-GGG--HHHHH-------------------------------HHHH
T ss_pred EEecCcCCCCcHHHHHHHHHHhCCceEE---ECCcceeeccHHHH-------------------------------HHHh
Confidence 8776433334567889999999999875 44543211100110 0000
Q ss_pred ccCccc--cHHHHHhhc-CCCEEEEecCCHHHHHHHHHcCCcEEEEcC---CCCC-CCCCccc---hHHHHHHHHHHh--
Q 017718 207 QIDRSL--SWKWLQTIT-KLPILVKGVLTAEDARIAVQAGAAGIIVSN---HGAR-QLDYVPA---TIMALEEVVKAT-- 274 (367)
Q Consensus 207 ~~d~~~--~~~~l~~~~-~~Pv~vK~v~~~~~a~~~~~~G~d~i~vs~---~gg~-~~~~~~~---~~~~l~~i~~~~-- 274 (367)
..-.+ ..+.++... .-=+.+--+.+.++|+...++|||.|+++- .||. ......+ ..+.+.++.++.
T Consensus 132 -~Gmgy~~EVemi~~A~~~gl~T~~yvf~~e~A~~M~~AGaDiiv~H~GlT~gG~~Ga~~~~sl~~a~~~~~~i~~aa~~ 210 (268)
T PF09370_consen 132 -TGMGYDREVEMIRKAHEKGLFTTAYVFNEEQARAMAEAGADIIVAHMGLTTGGSIGAKTALSLEEAAERIQEIFDAARA 210 (268)
T ss_dssp -TT--HHHHHHHHHHHHHTT-EE--EE-SHHHHHHHHHHT-SEEEEE-SS----------S--HHHHHHHHHHHHHHHHC
T ss_pred -cCCCHHHHHHHHHHHHHCCCeeeeeecCHHHHHHHHHcCCCEEEecCCccCCCCcCccccCCHHHHHHHHHHHHHHHHH
Confidence 00111 223444433 223444456799999999999999999842 1222 1122222 223344444433
Q ss_pred -cCCCc-EEEecCCCCHHHHHHHHHc--CCCEEEechHH
Q 017718 275 -QGRIP-VFLDGGVRRGTDVFKALAL--GASGIFIGRPV 309 (367)
Q Consensus 275 -~~~~~-via~GGI~~~~dv~kal~l--GAd~V~ig~~~ 309 (367)
+.++- ++--|-|.+++|+...+.. |+++..-|+.+
T Consensus 211 v~~dii~l~hGGPI~~p~D~~~~l~~t~~~~Gf~G~Ss~ 249 (268)
T PF09370_consen 211 VNPDIIVLCHGGPIATPEDAQYVLRNTKGIHGFIGASSM 249 (268)
T ss_dssp C-TT-EEEEECTTB-SHHHHHHHHHH-TTEEEEEESTTT
T ss_pred hCCCeEEEEeCCCCCCHHHHHHHHhcCCCCCEEecccch
Confidence 23443 4445669999999999983 68888777744
|
Interestingly, this novel domain also exists as an N-terminal domain of sigma54-dependent transcriptional activators (enhancer-binding proteins). Because sigma54 dependent activators typically have a three-domain structure: the variable N-terminal regulatory (activation) domain involved in signal recognition/receiving, the central AAA-type ATPase domain, and the DNA-binding domain (see PIRSF003187 from PIRSF, PIRSF005263 from PIRSF, PIRSF003184 from PIRSF, PIRSF005263 from PIRSF, IPR014443 from INTERPRO for details), the proteins of the current entry may be predicted to play a role in signal recognition/receiving and signal transduction.; PDB: 2P10_C. |
| >PRK06543 nicotinate-nucleotide pyrophosphorylase; Provisional | Back alignment and domain information |
|---|
Probab=96.62 E-value=0.018 Score=55.09 Aligned_cols=83 Identities=22% Similarity=0.189 Sum_probs=63.6
Q ss_pred HHHhhcC--CCEEEEecCCHHHHHHHHHcCCcEEEEcCCCCCCCCCccchHHHHHHHHHHhcCCCcEEEecCCCCHHHHH
Q 017718 216 WLQTITK--LPILVKGVLTAEDARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVF 293 (367)
Q Consensus 216 ~l~~~~~--~Pv~vK~v~~~~~a~~~~~~G~d~i~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~~~via~GGI~~~~dv~ 293 (367)
.+|+..+ .+|.| .+.+.++++.+.++|+|.|.+.| -+.+.+.++.+.++++..+.++||| |.+.+.
T Consensus 185 ~~r~~~~~~~kIeV-Ev~slee~~ea~~~gaDiImLDn----------~s~e~l~~av~~~~~~~~leaSGgI-~~~ni~ 252 (281)
T PRK06543 185 HVRAQLGHTTHVEV-EVDRLDQIEPVLAAGVDTIMLDN----------FSLDDLREGVELVDGRAIVEASGNV-NLNTVG 252 (281)
T ss_pred HHHHhCCCCCcEEE-EeCCHHHHHHHHhcCCCEEEECC----------CCHHHHHHHHHHhCCCeEEEEECCC-CHHHHH
Confidence 5555543 44443 67899999999999999999987 2344555555555667889999998 568899
Q ss_pred HHHHcCCCEEEechHHH
Q 017718 294 KALALGASGIFIGRPVV 310 (367)
Q Consensus 294 kal~lGAd~V~ig~~~l 310 (367)
++..+|.|.+.+|.+..
T Consensus 253 ~yA~tGVD~Is~galth 269 (281)
T PRK06543 253 AIASTGVDVISVGALTH 269 (281)
T ss_pred HHHhcCCCEEEeCcccc
Confidence 99999999999998553
|
|
| >PRK08999 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=96.61 E-value=0.013 Score=56.61 Aligned_cols=77 Identities=22% Similarity=0.216 Sum_probs=58.3
Q ss_pred cCCHHHHHHHHHcCCcEEEEcCCCCCC-CCCc-cchHHHHHHHHHHhcCCCcEEEecCCCCHHHHHHHHHcCCCEEEech
Q 017718 230 VLTAEDARIAVQAGAAGIIVSNHGARQ-LDYV-PATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFIGR 307 (367)
Q Consensus 230 v~~~~~a~~~~~~G~d~i~vs~~gg~~-~~~~-~~~~~~l~~i~~~~~~~~~via~GGI~~~~dv~kal~lGAd~V~ig~ 307 (367)
+-+.+++..+.+.|+|+|.++--..+. .... +..++.+.++++.. ++||++-||| +.+++...+.+||++|.+-+
T Consensus 233 ~h~~~~~~~a~~~~~dyi~~gpvf~t~tk~~~~~~g~~~~~~~~~~~--~~Pv~AiGGI-~~~~~~~~~~~g~~gva~i~ 309 (312)
T PRK08999 233 CHDAEELARAQRLGVDFAVLSPVQPTASHPGAAPLGWEGFAALIAGV--PLPVYALGGL-GPGDLEEAREHGAQGIAGIR 309 (312)
T ss_pred cCCHHHHHHHHhcCCCEEEECCCcCCCCCCCCCCCCHHHHHHHHHhC--CCCEEEECCC-CHHHHHHHHHhCCCEEEEEE
Confidence 467888999999999999986422221 1112 22467777777665 7999999999 99999999999999998866
Q ss_pred HH
Q 017718 308 PV 309 (367)
Q Consensus 308 ~~ 309 (367)
.+
T Consensus 310 ~~ 311 (312)
T PRK08999 310 GL 311 (312)
T ss_pred Ee
Confidence 43
|
|
| >TIGR00259 thylakoid_BtpA membrane complex biogenesis protein, BtpA family | Back alignment and domain information |
|---|
Probab=96.55 E-value=0.014 Score=55.11 Aligned_cols=70 Identities=21% Similarity=0.300 Sum_probs=54.6
Q ss_pred HHHHHHHHcC-CcEEEEcCCCCCCCCCccchHHHHHHHHHHhcCCCcEEEecCCCCHHHHHHHHHcCCCEEEechHHH
Q 017718 234 EDARIAVQAG-AAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFIGRPVV 310 (367)
Q Consensus 234 ~~a~~~~~~G-~d~i~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~~~via~GGI~~~~dv~kal~lGAd~V~ig~~~l 310 (367)
+.++.+...| +|+|+|++.+ .+.+..++.|.++++... ++|++..||+ +++.+.+++.. ||++.+||.|=
T Consensus 161 e~a~~~~~~~~aDavivtG~~----TG~~~d~~~l~~vr~~~~-~~PvllggGv-t~eNv~e~l~~-adGviVgS~~K 231 (257)
T TIGR00259 161 SIALDTVERGLADAVILSGKT----TGTEVDLELLKLAKETVK-DTPVLAGSGV-NLENVEELLSI-ADGVIVATTIK 231 (257)
T ss_pred HHHHHHHHhcCCCEEEECcCC----CCCCCCHHHHHHHHhccC-CCeEEEECCC-CHHHHHHHHhh-CCEEEECCCcc
Confidence 5577777777 9999998743 133567888888876543 6899999998 57889998887 99999999763
|
Members of this family are found in C. elegans, Synechocystis sp., E. coli, and several of the Archaea. Members in Cyanobacteria have been shown to play a role in protein complex biogenesis, and designated BtpA (biogenesis of thylakoid protein). Homologs in non-photosynthetic species, where thylakoid intracytoplasmic membranes are lacking, are likely to act elsewhere in membrane protein biogenesis. |
| >PRK05283 deoxyribose-phosphate aldolase; Provisional | Back alignment and domain information |
|---|
Probab=96.54 E-value=0.027 Score=53.14 Aligned_cols=89 Identities=28% Similarity=0.277 Sum_probs=58.0
Q ss_pred HHHhhcCCCEEEEec-----CCHH-----HHHHHHHcCCcEEEEcCCCCCCCCCccchHHHHHHHHHHh-----cCCCcE
Q 017718 216 WLQTITKLPILVKGV-----LTAE-----DARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKAT-----QGRIPV 280 (367)
Q Consensus 216 ~l~~~~~~Pv~vK~v-----~~~~-----~a~~~~~~G~d~i~vs~~gg~~~~~~~~~~~~l~~i~~~~-----~~~~~v 280 (367)
.+++..+-++.+|.+ ++.+ ..+.+.++|||+|-.|. | +..+..+.+.+.-+++.+ ++++.|
T Consensus 123 ~v~~~~~~~~~lKVIlEt~~L~~ee~i~~a~~~a~~aGADFVKTST-G---f~~~gAt~edv~lm~~~i~~~~~~~~vgI 198 (257)
T PRK05283 123 ACKEACAANVLLKVIIETGELKDEALIRKASEIAIKAGADFIKTST-G---KVPVNATLEAARIMLEVIRDMGVAKTVGF 198 (257)
T ss_pred HHHHHhCCCceEEEEEeccccCCHHHHHHHHHHHHHhCCCEEEcCC-C---CCCCCCCHHHHHHHHHHHHhcccCCCeeE
Confidence 444443324677876 2323 25678999999999864 2 112224444444444443 357899
Q ss_pred EEecCCCCHHHHHHHHHcCCCEEEechHHH
Q 017718 281 FLDGGVRRGTDVFKALALGASGIFIGRPVV 310 (367)
Q Consensus 281 ia~GGI~~~~dv~kal~lGAd~V~ig~~~l 310 (367)
=++|||++.+++.+++.+|.+.. |.-|+
T Consensus 199 KAsGGIrt~~~A~~~i~ag~~~l--g~~~~ 226 (257)
T PRK05283 199 KPAGGVRTAEDAAQYLALADEIL--GADWA 226 (257)
T ss_pred EccCCCCCHHHHHHHHHHHHHHh--Chhhc
Confidence 99999999999999999998753 55554
|
|
| >TIGR01949 AroFGH_arch predicted phospho-2-dehydro-3-deoxyheptonate aldolase | Back alignment and domain information |
|---|
Probab=96.54 E-value=0.0088 Score=56.50 Aligned_cols=82 Identities=24% Similarity=0.406 Sum_probs=58.1
Q ss_pred hhcCCCEEEEec--------CCH---HH-HHHHHHcCCcEEEEcCCCCCCCCCccchHHHHHHHHHHhcCCCcEEEecCC
Q 017718 219 TITKLPILVKGV--------LTA---ED-ARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGV 286 (367)
Q Consensus 219 ~~~~~Pv~vK~v--------~~~---~~-a~~~~~~G~d~i~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~~~via~GGI 286 (367)
..+++|+++... .+. .. ++.+.++|+|+|-++.. ...+.+.++.+.. ++||.+.|||
T Consensus 133 ~~~g~~liv~~~~~Gvh~~~~~~~~~~~~~~~a~~~GADyikt~~~---------~~~~~l~~~~~~~--~iPVva~GGi 201 (258)
T TIGR01949 133 DDWGVPLLAMMYPRGPHIDDRDPELVAHAARLGAELGADIVKTPYT---------GDIDSFRDVVKGC--PAPVVVAGGP 201 (258)
T ss_pred HHcCCCEEEEEeccCcccccccHHHHHHHHHHHHHHCCCEEeccCC---------CCHHHHHHHHHhC--CCcEEEecCC
Confidence 346788877422 121 22 57788999999998521 2466777776655 7999999999
Q ss_pred C--CHHHHH----HHHHcCCCEEEechHHHH
Q 017718 287 R--RGTDVF----KALALGASGIFIGRPVVY 311 (367)
Q Consensus 287 ~--~~~dv~----kal~lGAd~V~ig~~~l~ 311 (367)
+ +.+++. .++.+||+++.+|+.++.
T Consensus 202 ~~~~~~~~~~~i~~~~~aGa~Gia~g~~i~~ 232 (258)
T TIGR01949 202 KTNSDREFLQMIKDAMEAGAAGVAVGRNIFQ 232 (258)
T ss_pred CCCCHHHHHHHHHHHHHcCCcEEehhhHhhc
Confidence 9 655554 445899999999998874
|
Together these two genes appear to perform the synthesis of 3-dehydroquinate. It is presumed that the substrates and the chemical transformations involved are identical, but this has not yet been proven experimentally. |
| >PF04481 DUF561: Protein of unknown function (DUF561); InterPro: IPR007570 Protein in this entry are of unknown function and are found in cyanobacteria and the chloroplasts of algae | Back alignment and domain information |
|---|
Probab=96.52 E-value=0.01 Score=54.02 Aligned_cols=72 Identities=32% Similarity=0.344 Sum_probs=53.8
Q ss_pred HHHHHHHHcCCcEEEEcCCCCCCCC-----------CccchHHHHHHHHHHhcCCCcEEEecCCCCHHHHHHHHHcCCCE
Q 017718 234 EDARIAVQAGAAGIIVSNHGARQLD-----------YVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASG 302 (367)
Q Consensus 234 ~~a~~~~~~G~d~i~vs~~gg~~~~-----------~~~~~~~~l~~i~~~~~~~~~via~GGI~~~~dv~kal~lGAd~ 302 (367)
+-|..+.++|+|.|-. .||+.-. ...+++..-.+|.+.+ ++||+...|+..-. +=-++++||.+
T Consensus 136 ~LA~~L~~~GaDiIQT--EGgtss~p~~~g~lglIekaapTLAaay~ISr~v--~iPVlcASGlS~vT-~PmAiaaGAsG 210 (242)
T PF04481_consen 136 QLAEDLVKAGADIIQT--EGGTSSKPTSPGILGLIEKAAPTLAAAYAISRAV--SIPVLCASGLSAVT-APMAIAAGASG 210 (242)
T ss_pred HHHHHHHHhCCcEEEc--CCCCCCCCCCcchHHHHHHHhHHHHHHHHHHhcc--CCceEeccCcchhh-HHHHHHcCCcc
Confidence 4488999999998876 5665311 1234566666777766 89999999997754 55688999999
Q ss_pred EEechHHH
Q 017718 303 IFIGRPVV 310 (367)
Q Consensus 303 V~ig~~~l 310 (367)
|++|+.+=
T Consensus 211 VGVGSavn 218 (242)
T PF04481_consen 211 VGVGSAVN 218 (242)
T ss_pred cchhHHhh
Confidence 99999763
|
As the family is exclusively found in phototrophic organisms it may play a role in photosynthesis. |
| >cd04727 pdxS PdxS is a subunit of the pyridoxal 5'-phosphate (PLP) synthase, an important enzyme in deoxyxylulose 5-phosphate (DXP)-independent pathway for de novo biosynthesis of PLP, present in some eubacteria, in archaea, fungi, plants, plasmodia, and some metazoa | Back alignment and domain information |
|---|
Probab=96.52 E-value=0.14 Score=48.75 Aligned_cols=81 Identities=17% Similarity=0.129 Sum_probs=59.5
Q ss_pred cHHHHHhhcCCCEEEEecC-CHHHHHHHHHcCCcEEEEcCCCCCCCCCccchHHHHHHHHHHhcCCCcEEEecCCCCHHH
Q 017718 213 SWKWLQTITKLPILVKGVL-TAEDARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTD 291 (367)
Q Consensus 213 ~~~~l~~~~~~Pv~vK~v~-~~~~a~~~~~~G~d~i~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~~~via~GGI~~~~d 291 (367)
+++.+++.+++||+-+.-- ...+++.+.++|+|.|..+..- . |..+.+..++... ++|++ .|++|-++
T Consensus 56 ~I~~Ik~~V~iPVIGi~K~~~~~Ea~~L~eaGvDiIDaT~r~------r-P~~~~~~~iK~~~--~~l~M--AD~stleE 124 (283)
T cd04727 56 MIKEIMDAVSIPVMAKVRIGHFVEAQILEALGVDMIDESEVL------T-PADEEHHIDKHKF--KVPFV--CGARNLGE 124 (283)
T ss_pred HHHHHHHhCCCCeEEeeehhHHHHHHHHHHcCCCEEeccCCC------C-cHHHHHHHHHHHc--CCcEE--ccCCCHHH
Confidence 5668999999999987654 3789999999999999643211 1 2344555555433 45554 57999999
Q ss_pred HHHHHHcCCCEEE
Q 017718 292 VFKALALGASGIF 304 (367)
Q Consensus 292 v~kal~lGAd~V~ 304 (367)
+..+..+|||.|.
T Consensus 125 al~a~~~Gad~I~ 137 (283)
T cd04727 125 ALRRISEGAAMIR 137 (283)
T ss_pred HHHHHHCCCCEEE
Confidence 9999999999873
|
Together with PdxT, PdxS forms the PLP synthase, a heteromeric glutamine amidotransferase (GATase), whereby PdxT produces ammonia from glutamine and PdxS combines ammonia with five- and three-carbon phosphosugars to form PLP. PLP is the biologically active form of vitamin B6, an essential cofactor in many biochemical processes. PdxS subunits form two hexameric rings. |
| >PRK03512 thiamine-phosphate pyrophosphorylase; Provisional | Back alignment and domain information |
|---|
Probab=96.47 E-value=0.063 Score=49.29 Aligned_cols=80 Identities=18% Similarity=0.172 Sum_probs=58.9
Q ss_pred cCCHHHHHHHHHcCCcEEEEcCCCCCC-CC--CccchHHHHHHHHHHhcCCCcEEEecCCCCHHHHHHHHHcCCCEEEec
Q 017718 230 VLTAEDARIAVQAGAAGIIVSNHGARQ-LD--YVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFIG 306 (367)
Q Consensus 230 v~~~~~a~~~~~~G~d~i~vs~~gg~~-~~--~~~~~~~~l~~i~~~~~~~~~via~GGI~~~~dv~kal~lGAd~V~ig 306 (367)
+-+.+++..+.+.|+|++.++---.+. .. ..+..++.+.++.+.. .++||++-|||. .+++.+.+..||++|.+-
T Consensus 109 ~H~~~e~~~A~~~gaDYi~lgpvf~T~tK~~~~~~~G~~~l~~~~~~~-~~~PV~AiGGI~-~~ni~~l~~~Ga~GiAvi 186 (211)
T PRK03512 109 THDDMEIDVALAARPSYIALGHVFPTQTKQMPSAPQGLAQLARHVERL-ADYPTVAIGGIS-LERAPAVLATGVGSIAVV 186 (211)
T ss_pred CCCHHHHHHHhhcCCCEEEECCccCCCCCCCCCCCCCHHHHHHHHHhc-CCCCEEEECCCC-HHHHHHHHHcCCCEEEEh
Confidence 367888999999999999996422221 11 1223455666665542 269999999997 789999999999999999
Q ss_pred hHHHH
Q 017718 307 RPVVY 311 (367)
Q Consensus 307 ~~~l~ 311 (367)
+.++.
T Consensus 187 sai~~ 191 (211)
T PRK03512 187 SAITQ 191 (211)
T ss_pred hHhhC
Confidence 98863
|
|
| >PF01884 PcrB: PcrB family; InterPro: IPR008205 This entry represents geranylgeranylglyceryl phosphate (GGGP) synthase, which is a prenyltransferase that catalyses the transfer of the geranylgeranyl moiety of geranylgeranyl diphosphate (GGPP) to the C3 hydroxyl of sn-glycerol-1-phosphate (G1P) | Back alignment and domain information |
|---|
Probab=96.44 E-value=0.006 Score=56.58 Aligned_cols=67 Identities=22% Similarity=0.339 Sum_probs=44.2
Q ss_pred HHcCCcEEEEcCCCCCCCCCccchHHHHHHHHHHhcCCCcEEEecCCCCHHHHHHHHHcCCCEEEechHHHH
Q 017718 240 VQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFIGRPVVY 311 (367)
Q Consensus 240 ~~~G~d~i~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~~~via~GGI~~~~dv~kal~lGAd~V~ig~~~l~ 311 (367)
.=.|...|.+-...|+ .++.+ +.+.++++.+ .+.|+|..|||+|++++.+++..|||.|.+|+.+--
T Consensus 150 ~~~g~~~iYLEaGSGa---~~~v~-~~v~~~~~~~-~~~~LivGGGIrs~e~A~~~~~aGAD~IVvGn~iee 216 (230)
T PF01884_consen 150 EYLGMPIIYLEAGSGA---YGPVP-EEVIAAVKKL-SDIPLIVGGGIRSPEQAREMAEAGADTIVVGNAIEE 216 (230)
T ss_dssp HHTT-SEEEEE--TTS---SS-HH-HHHHHHHHHS-SSSEEEEESS--SHHHHHHHHCTTSSEEEESCHHHH
T ss_pred HHhCCCEEEEEeCCCC---CCCcc-HHHHHHHHhc-CCccEEEeCCcCCHHHHHHHHHCCCCEEEECCEEEE
Confidence 3467888887431121 12222 3333455544 389999999999999999999999999999997753
|
This reaction is the first ether-bond-formation step in the biosynthesis of archaeal membrane lipids. This entry also matches putative glycerol-1-phosphate prenyltransferases that may catalyse the transfer of a prenyl moiety to sn-glycerol-1-phosphate (G1P) []. Some of the prokaryotic proteins in this family are related to pcrB. The Staphylococcus aureus chromosomal gene pcrA encodes a protein with significant similarity (40% identity) to two Escherichia coli helicases: the helicase II encoded by the uvrD gene and the Rep helicase. PcrB gene seems to belong to an operon containing at least one other gene, pcrBA, downstream from pcrB []. The PcrB proteins often contain an FMN binding site although the function of these proteins is still unknown.; GO: 0016765 transferase activity, transferring alkyl or aryl (other than methyl) groups; PDB: 1VIZ_A 2F6X_B 2F6U_B 3VKD_A 3VKA_A 3VK5_B 3VKC_B 3VKB_B. |
| >PLN02617 imidazole glycerol phosphate synthase hisHF | Back alignment and domain information |
|---|
Probab=96.43 E-value=0.013 Score=60.97 Aligned_cols=75 Identities=19% Similarity=0.144 Sum_probs=59.9
Q ss_pred HHHHHHHHHcCCcEEEEcCC--CCCCCCCccchHHHHHHHHHHhcCCCcEEEecCCCCHHHHHHHHH-cCCCEEEechHH
Q 017718 233 AEDARIAVQAGAAGIIVSNH--GARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALA-LGASGIFIGRPV 309 (367)
Q Consensus 233 ~~~a~~~~~~G~d~i~vs~~--gg~~~~~~~~~~~~l~~i~~~~~~~~~via~GGI~~~~dv~kal~-lGAd~V~ig~~~ 309 (367)
.+-++.+.+.|+..|.+..- -|+ ..-..++.+..+.+.+ ++|||++||+.+.+|+.+++. .||+++..++.|
T Consensus 441 ~~~~~~~~~~Gageil~t~id~DGt---~~G~d~~l~~~v~~~~--~ipviasGG~g~~~d~~~~~~~~~~~a~~aa~~f 515 (538)
T PLN02617 441 YELAKAVEELGAGEILLNCIDCDGQ---GKGFDIELVKLVSDAV--TIPVIASSGAGTPEHFSDVFSKTNASAALAAGIF 515 (538)
T ss_pred HHHHHHHHhcCCCEEEEeecccccc---ccCcCHHHHHHHHhhC--CCCEEEECCCCCHHHHHHHHhcCCccEEEEEeee
Confidence 35589999999999988541 111 1224677888888777 899999999999999999998 679999999988
Q ss_pred HHH
Q 017718 310 VYS 312 (367)
Q Consensus 310 l~~ 312 (367)
.|.
T Consensus 516 h~~ 518 (538)
T PLN02617 516 HRK 518 (538)
T ss_pred ccC
Confidence 773
|
|
| >PF04131 NanE: Putative N-acetylmannosamine-6-phosphate epimerase; InterPro: IPR007260 This family represents a putative ManNAc-6-P-to-GlcNAc-6P epimerase in the N-acetylmannosamine (ManNAc) utilization pathway found mainly in pathogenic bacteria for the reaction: |
Back alignment and domain information |
|---|
Probab=96.36 E-value=0.03 Score=50.28 Aligned_cols=84 Identities=18% Similarity=0.173 Sum_probs=54.0
Q ss_pred cHHHHHhhcCCCEE--EEec---------CCHHHHHHHHHcCCcEEEEcCCCCCCCCCccchHHHHHHHHHHhcCCCcEE
Q 017718 213 SWKWLQTITKLPIL--VKGV---------LTAEDARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVF 281 (367)
Q Consensus 213 ~~~~l~~~~~~Pv~--vK~v---------~~~~~a~~~~~~G~d~i~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~~~vi 281 (367)
+...+|+.+++||| +|.. .+.+++..+.++|+|.|-+..+..... .+..+.+.+|++. ...++
T Consensus 23 dI~aik~~v~lPIIGi~K~~y~~~~V~ITPT~~ev~~l~~aGadIIAlDaT~R~Rp---~~l~~li~~i~~~---~~l~M 96 (192)
T PF04131_consen 23 DIRAIKKAVDLPIIGIIKRDYPDSDVYITPTLKEVDALAEAGADIIALDATDRPRP---ETLEELIREIKEK---YQLVM 96 (192)
T ss_dssp HHHHHHTTB-S-EEEE-B-SBTTSS--BS-SHHHHHHHHHCT-SEEEEE-SSSS-S---S-HHHHHHHHHHC---TSEEE
T ss_pred HHHHHHHhcCCCEEEEEeccCCCCCeEECCCHHHHHHHHHcCCCEEEEecCCCCCC---cCHHHHHHHHHHh---CcEEe
Confidence 44588888999985 2321 467999999999999999986543221 3445566666552 24444
Q ss_pred EecCCCCHHHHHHHHHcCCCEEE
Q 017718 282 LDGGVRRGTDVFKALALGASGIF 304 (367)
Q Consensus 282 a~GGI~~~~dv~kal~lGAd~V~ 304 (367)
..|.|-+|+..+..+|+|.|.
T Consensus 97 --ADist~ee~~~A~~~G~D~I~ 117 (192)
T PF04131_consen 97 --ADISTLEEAINAAELGFDIIG 117 (192)
T ss_dssp --EE-SSHHHHHHHHHTT-SEEE
T ss_pred --eecCCHHHHHHHHHcCCCEEE
Confidence 458999999999999999884
|
; GO: 0047465 N-acylglucosamine-6-phosphate 2-epimerase activity, 0006051 N-acetylmannosamine metabolic process; PDB: 1Y0E_B 3IGS_A 1YXY_A 3Q58_B. |
| >PRK08673 3-deoxy-7-phosphoheptulonate synthase; Reviewed | Back alignment and domain information |
|---|
Probab=96.34 E-value=0.15 Score=50.15 Aligned_cols=119 Identities=24% Similarity=0.362 Sum_probs=70.2
Q ss_pred hcCCCEEEEecC--CHHH----HHHHHHcCCcEEEEcCCCCCCCCC-ccc--hHHHHHHHHHHhcCCCcEEEecCCCCH-
Q 017718 220 ITKLPILVKGVL--TAED----ARIAVQAGAAGIIVSNHGARQLDY-VPA--TIMALEEVVKATQGRIPVFLDGGVRRG- 289 (367)
Q Consensus 220 ~~~~Pv~vK~v~--~~~~----a~~~~~~G~d~i~vs~~gg~~~~~-~~~--~~~~l~~i~~~~~~~~~via~GGI~~~- 289 (367)
.+++||++|..+ +.++ ++.+...|-+-+++--.|.++... ... .+..++.+++.. .+|||++..=.+|
T Consensus 198 ~~~kPViLk~G~~~ti~E~l~A~e~i~~~GN~~viL~erG~~tf~~~~~~~ldl~ai~~lk~~~--~lPVi~d~sH~~G~ 275 (335)
T PRK08673 198 KTNKPVLLKRGMSATIEEWLMAAEYILAEGNPNVILCERGIRTFETATRNTLDLSAVPVIKKLT--HLPVIVDPSHATGK 275 (335)
T ss_pred cCCCcEEEeCCCCCCHHHHHHHHHHHHHcCCCeEEEEECCCCCCCCcChhhhhHHHHHHHHHhc--CCCEEEeCCCCCcc
Confidence 368999999874 4555 556667888777775445545422 222 345566666554 6999886544444
Q ss_pred -----HHHHHHHHcCCCEEEechHHHHHhh-ccChHHH-HHHHHHHHHHHHHHHHHhC
Q 017718 290 -----TDVFKALALGASGIFIGRPVVYSLA-AEGEKGV-RRVLEMLREEFELAMALSG 340 (367)
Q Consensus 290 -----~dv~kal~lGAd~V~ig~~~l~~l~-~~G~~~v-~~~i~~l~~el~~~m~~~G 340 (367)
.-...|+++|||+++|-.-+--.-+ ++|...+ -+-++.|.++++..-..+|
T Consensus 276 ~~~v~~~a~AAvA~GAdGliIE~H~~pd~alsD~~~sl~p~e~~~lv~~i~~i~~~~g 333 (335)
T PRK08673 276 RDLVEPLALAAVAAGADGLIVEVHPDPEKALSDGPQSLTPEEFEELMKKLRAIAEALG 333 (335)
T ss_pred ccchHHHHHHHHHhCCCEEEEEecCCcccCCCcchhcCCHHHHHHHHHHHHHHHHHhC
Confidence 4556788899999999874422100 2332111 1234455555555555544
|
|
| >TIGR01182 eda Entner-Doudoroff aldolase | Back alignment and domain information |
|---|
Probab=96.33 E-value=0.022 Score=51.97 Aligned_cols=75 Identities=28% Similarity=0.319 Sum_probs=55.7
Q ss_pred HHHhhc-CCCEEEEecCCHHHHHHHHHcCCcEEEEcCCCCCCCCCccchHHHHHHHHHHhcCCCcEEEecCCCCHHHHHH
Q 017718 216 WLQTIT-KLPILVKGVLTAEDARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFK 294 (367)
Q Consensus 216 ~l~~~~-~~Pv~vK~v~~~~~a~~~~~~G~d~i~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~~~via~GGI~~~~dv~k 294 (367)
++++.. ++.|.+..+.+.++++.+.++|+++|+- - + ...+++..+.+ . .+|.+- |+.|+.++.+
T Consensus 52 ~l~~~~~~~~vGAGTVl~~~~a~~a~~aGA~Fivs-P--~-------~~~~v~~~~~~-~--~i~~iP--G~~TptEi~~ 116 (204)
T TIGR01182 52 LLRKEVPDALIGAGTVLNPEQLRQAVDAGAQFIVS-P--G-------LTPELAKHAQD-H--GIPIIP--GVATPSEIML 116 (204)
T ss_pred HHHHHCCCCEEEEEeCCCHHHHHHHHHcCCCEEEC-C--C-------CCHHHHHHHHH-c--CCcEEC--CCCCHHHHHH
Confidence 666655 4678888889999999999999999853 1 1 12234433322 2 677776 9999999999
Q ss_pred HHHcCCCEEEe
Q 017718 295 ALALGASGIFI 305 (367)
Q Consensus 295 al~lGAd~V~i 305 (367)
|+.+||+.|=+
T Consensus 117 A~~~Ga~~vKl 127 (204)
T TIGR01182 117 ALELGITALKL 127 (204)
T ss_pred HHHCCCCEEEE
Confidence 99999998754
|
2-deydro-3-deoxyphosphogluconate aldolase (EC 4.1.2.14) is an enzyme of the Entner-Doudoroff pathway. This aldolase has another function, 4-hydroxy-2-oxoglutarate aldolase (EC 4.1.3.16) shown experimentally in Escherichia coli and Pseudomonas putida |
| >PRK08745 ribulose-phosphate 3-epimerase; Provisional | Back alignment and domain information |
|---|
Probab=96.31 E-value=0.19 Score=46.59 Aligned_cols=108 Identities=16% Similarity=0.237 Sum_probs=64.3
Q ss_pred HHHhhcCCCEEEEec--CCHHHHHHHHHcCCcEEEEc--CCCCCCCCCccchHHHHHHHHHHhc---CCCcEEEecCCCC
Q 017718 216 WLQTITKLPILVKGV--LTAEDARIAVQAGAAGIIVS--NHGARQLDYVPATIMALEEVVKATQ---GRIPVFLDGGVRR 288 (367)
Q Consensus 216 ~l~~~~~~Pv~vK~v--~~~~~a~~~~~~G~d~i~vs--~~gg~~~~~~~~~~~~l~~i~~~~~---~~~~via~GGI~~ 288 (367)
++|+. ++...+... ...+..+...+ -+|.|.+- +-|......-+..++-+.++++... .++.|-+||||.
T Consensus 105 ~Ir~~-g~k~GlalnP~T~~~~i~~~l~-~vD~VlvMtV~PGf~GQ~fi~~~l~KI~~l~~~~~~~~~~~~IeVDGGI~- 181 (223)
T PRK08745 105 LIKSH-GCQAGLVLNPATPVDILDWVLP-ELDLVLVMSVNPGFGGQAFIPSALDKLRAIRKKIDALGKPIRLEIDGGVK- 181 (223)
T ss_pred HHHHC-CCceeEEeCCCCCHHHHHHHHh-hcCEEEEEEECCCCCCccccHHHHHHHHHHHHHHHhcCCCeeEEEECCCC-
Confidence 55553 444433333 45566665555 37777652 2232222334556666666665432 247799999997
Q ss_pred HHHHHHHHHcCCCEEEechHHHHHhhccChHHHHHHHHHHHHHH
Q 017718 289 GTDVFKALALGASGIFIGRPVVYSLAAEGEKGVRRVLEMLREEF 332 (367)
Q Consensus 289 ~~dv~kal~lGAd~V~ig~~~l~~l~~~G~~~v~~~i~~l~~el 332 (367)
.+.+.++..+|||.+.+||.+ |. .+...+.++.+++.+
T Consensus 182 ~eti~~l~~aGaDi~V~GSai-F~-----~~d~~~~~~~lr~~~ 219 (223)
T PRK08745 182 ADNIGAIAAAGADTFVAGSAI-FN-----APDYAQVIAQMRAAV 219 (223)
T ss_pred HHHHHHHHHcCCCEEEEChhh-hC-----CCCHHHHHHHHHHHH
Confidence 567888888999999999984 42 112344556665543
|
|
| >PRK08227 autoinducer 2 aldolase; Validated | Back alignment and domain information |
|---|
Probab=96.29 E-value=0.1 Score=49.50 Aligned_cols=78 Identities=24% Similarity=0.407 Sum_probs=56.0
Q ss_pred hhcCCCEEEEec------CCH-----HHHHHHHHcCCcEEEEcCCCCCCCCCccchHHHHHHHHHHhcCCCcEEEecCCC
Q 017718 219 TITKLPILVKGV------LTA-----EDARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVR 287 (367)
Q Consensus 219 ~~~~~Pv~vK~v------~~~-----~~a~~~~~~G~d~i~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~~~via~GGI~ 287 (367)
+.|++|+++ .. .+. ..++.+.+.|||.|-+-- . . +.+.++.+.. .+||+..||=.
T Consensus 137 ~~~G~Plla-~~prG~~~~~~~~~ia~aaRiaaELGADiVK~~y-------~---~-~~f~~vv~a~--~vPVviaGG~k 202 (264)
T PRK08227 137 LRYGMPVMA-VTAVGKDMVRDARYFSLATRIAAEMGAQIIKTYY-------V---E-EGFERITAGC--PVPIVIAGGKK 202 (264)
T ss_pred HHhCCcEEE-EecCCCCcCchHHHHHHHHHHHHHHcCCEEecCC-------C---H-HHHHHHHHcC--CCcEEEeCCCC
Confidence 458999887 32 111 227889999999998732 1 1 5677777755 79999999988
Q ss_pred CH-HHHH----HHHHcCCCEEEechHHH
Q 017718 288 RG-TDVF----KALALGASGIFIGRPVV 310 (367)
Q Consensus 288 ~~-~dv~----kal~lGAd~V~ig~~~l 310 (367)
.. +|++ .++..||.+|.+||-+.
T Consensus 203 ~~~~~~L~~v~~ai~aGa~Gv~~GRNIf 230 (264)
T PRK08227 203 LPERDALEMCYQAIDEGASGVDMGRNIF 230 (264)
T ss_pred CCHHHHHHHHHHHHHcCCceeeechhhh
Confidence 53 3344 56778999999999554
|
|
| >PRK06843 inosine 5-monophosphate dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=96.28 E-value=0.018 Score=57.88 Aligned_cols=67 Identities=12% Similarity=0.238 Sum_probs=52.1
Q ss_pred HHHHHHHHcCCcEEEEcCCCCCCCCCccchHHHHHHHHHHhcCCCcEEEecCCCCHHHHHHHHHcCCCEEEec
Q 017718 234 EDARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFIG 306 (367)
Q Consensus 234 ~~a~~~~~~G~d~i~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~~~via~GGI~~~~dv~kal~lGAd~V~ig 306 (367)
+.+..+.++|+|.|++....|. +....+.+.++++..+ +++|+ .|+|.|.+++..++.+|||+|.+|
T Consensus 156 ~~v~~lv~aGvDvI~iD~a~g~----~~~~~~~v~~ik~~~p-~~~vi-~g~V~T~e~a~~l~~aGaD~I~vG 222 (404)
T PRK06843 156 ERVEELVKAHVDILVIDSAHGH----STRIIELVKKIKTKYP-NLDLI-AGNIVTKEAALDLISVGADCLKVG 222 (404)
T ss_pred HHHHHHHhcCCCEEEEECCCCC----ChhHHHHHHHHHhhCC-CCcEE-EEecCCHHHHHHHHHcCCCEEEEC
Confidence 6789999999999998653321 2345677888877653 45544 589999999999999999999877
|
|
| >PRK09722 allulose-6-phosphate 3-epimerase; Provisional | Back alignment and domain information |
|---|
Probab=96.26 E-value=0.4 Score=44.62 Aligned_cols=111 Identities=13% Similarity=0.228 Sum_probs=65.3
Q ss_pred HHHhhcCCCEEEEec--CCHHHHHHHHHcCCcEEEEc--CCCCCCCCCccchHHHHHHHHHHhcC---CCcEEEecCCCC
Q 017718 216 WLQTITKLPILVKGV--LTAEDARIAVQAGAAGIIVS--NHGARQLDYVPATIMALEEVVKATQG---RIPVFLDGGVRR 288 (367)
Q Consensus 216 ~l~~~~~~Pv~vK~v--~~~~~a~~~~~~G~d~i~vs--~~gg~~~~~~~~~~~~l~~i~~~~~~---~~~via~GGI~~ 288 (367)
.+|+ .++...+... ...+..+...+ -+|.|.+- +-|......-+..++-+.++++.... ++.|-+||||.
T Consensus 103 ~Ik~-~G~kaGlalnP~T~~~~l~~~l~-~vD~VLvMsV~PGf~GQ~fi~~~l~KI~~lr~~~~~~~~~~~IeVDGGI~- 179 (229)
T PRK09722 103 EIRR-AGMKVGLVLNPETPVESIKYYIH-LLDKITVMTVDPGFAGQPFIPEMLDKIAELKALRERNGLEYLIEVDGSCN- 179 (229)
T ss_pred HHHH-cCCCEEEEeCCCCCHHHHHHHHH-hcCEEEEEEEcCCCcchhccHHHHHHHHHHHHHHHhcCCCeEEEEECCCC-
Confidence 4444 2444433333 44566665554 36777653 22221223345566666666654422 47799999998
Q ss_pred HHHHHHHHHcCCCEEEechHHHHHhhccChHHHHHHHHHHHHHHH
Q 017718 289 GTDVFKALALGASGIFIGRPVVYSLAAEGEKGVRRVLEMLREEFE 333 (367)
Q Consensus 289 ~~dv~kal~lGAd~V~ig~~~l~~l~~~G~~~v~~~i~~l~~el~ 333 (367)
.+.+.++..+|||.+.+||..+|+. .+...+.++.+++.++
T Consensus 180 ~~~i~~~~~aGad~~V~Gss~iF~~----~~d~~~~i~~l~~~~~ 220 (229)
T PRK09722 180 QKTYEKLMEAGADVFIVGTSGLFNL----DEDIDEAWDIMTAQIE 220 (229)
T ss_pred HHHHHHHHHcCCCEEEEChHHHcCC----CCCHHHHHHHHHHHHH
Confidence 5678888899999999998766631 1123445666665443
|
|
| >PRK08091 ribulose-phosphate 3-epimerase; Validated | Back alignment and domain information |
|---|
Probab=96.24 E-value=0.19 Score=46.77 Aligned_cols=93 Identities=10% Similarity=-0.020 Sum_probs=57.4
Q ss_pred HHHHhhcCC--CEEEEec--CCHHHHHHHHHcCCcEEEEc--CCCCCCCCCccchHHHHHHHHHHhcC---CCcEEEecC
Q 017718 215 KWLQTITKL--PILVKGV--LTAEDARIAVQAGAAGIIVS--NHGARQLDYVPATIMALEEVVKATQG---RIPVFLDGG 285 (367)
Q Consensus 215 ~~l~~~~~~--Pv~vK~v--~~~~~a~~~~~~G~d~i~vs--~~gg~~~~~~~~~~~~l~~i~~~~~~---~~~via~GG 285 (367)
+++|+. +. ...+... ...+..+...+. +|.|.+- +-|......-+..++-+.++++.... ++.|-+|||
T Consensus 110 ~~Ik~~-g~~~kaGlalnP~Tp~~~i~~~l~~-vD~VLiMtV~PGfgGQ~f~~~~l~KI~~lr~~~~~~~~~~~IeVDGG 187 (228)
T PRK08091 110 EWLAKQ-KTTVLIGLCLCPETPISLLEPYLDQ-IDLIQILTLDPRTGTKAPSDLILDRVIQVENRLGNRRVEKLISIDGS 187 (228)
T ss_pred HHHHHC-CCCceEEEEECCCCCHHHHHHHHhh-cCEEEEEEECCCCCCccccHHHHHHHHHHHHHHHhcCCCceEEEECC
Confidence 356553 44 3333332 456777666653 7887763 22221222334456666666554322 577999999
Q ss_pred CCCHHHHHHHHHcCCCEEEechHHHH
Q 017718 286 VRRGTDVFKALALGASGIFIGRPVVY 311 (367)
Q Consensus 286 I~~~~dv~kal~lGAd~V~ig~~~l~ 311 (367)
|. .+.+.++..+|||.+.+|+. +|
T Consensus 188 I~-~~ti~~l~~aGaD~~V~GSa-lF 211 (228)
T PRK08091 188 MT-LELASYLKQHQIDWVVSGSA-LF 211 (228)
T ss_pred CC-HHHHHHHHHCCCCEEEEChh-hh
Confidence 97 56788888999999999997 45
|
|
| >PLN02617 imidazole glycerol phosphate synthase hisHF | Back alignment and domain information |
|---|
Probab=96.21 E-value=0.024 Score=59.12 Aligned_cols=76 Identities=22% Similarity=0.184 Sum_probs=59.8
Q ss_pred HHHHHHHHcCCcEEEEcCCCCC-C-CCCccchHHHHHHHHHHhcCCCcEEEecCCCCH-----------HHHHHHHHcCC
Q 017718 234 EDARIAVQAGAAGIIVSNHGAR-Q-LDYVPATIMALEEVVKATQGRIPVFLDGGVRRG-----------TDVFKALALGA 300 (367)
Q Consensus 234 ~~a~~~~~~G~d~i~vs~~gg~-~-~~~~~~~~~~l~~i~~~~~~~~~via~GGI~~~-----------~dv~kal~lGA 300 (367)
+.|+...+.|||-|.+-+--+. . .....+.++.+.++.+.+ .+|+.+-||||+- +++.++|.+||
T Consensus 271 e~a~~y~~~Gadel~~~Di~~~~~~~~~~~~~~~~i~~i~~~~--~ip~~vGGGIr~~~d~~~~~~~~~e~~~~~l~~Ga 348 (538)
T PLN02617 271 ELAGQYYKDGADEVAFLNITGFRDFPLGDLPMLEVLRRASENV--FVPLTVGGGIRDFTDANGRYYSSLEVASEYFRSGA 348 (538)
T ss_pred HHHHHHHHcCCCEEEEEECCCCcCCcccchhHHHHHHHHHhhC--CCCEEEcCCccccccccccccchHHHHHHHHHcCC
Confidence 6689999999999998653221 1 112234578888988877 7999999999998 55899999999
Q ss_pred CEEEechHHHH
Q 017718 301 SGIFIGRPVVY 311 (367)
Q Consensus 301 d~V~ig~~~l~ 311 (367)
|-|.||+..+.
T Consensus 349 dkV~i~s~Av~ 359 (538)
T PLN02617 349 DKISIGSDAVY 359 (538)
T ss_pred CEEEEChHHHh
Confidence 99999997665
|
|
| >PRK09517 multifunctional thiamine-phosphate pyrophosphorylase/synthase/phosphomethylpyrimidine kinase; Provisional | Back alignment and domain information |
|---|
Probab=96.19 E-value=0.1 Score=56.83 Aligned_cols=96 Identities=11% Similarity=0.116 Sum_probs=62.1
Q ss_pred HHHHHhhcCCCEEEEe-cCCHHHHHHHH----Hc---CCcEEEEcCCCCCC-CCCc--cchHHHHHHHHHHhcC-CCcEE
Q 017718 214 WKWLQTITKLPILVKG-VLTAEDARIAV----QA---GAAGIIVSNHGARQ-LDYV--PATIMALEEVVKATQG-RIPVF 281 (367)
Q Consensus 214 ~~~l~~~~~~Pv~vK~-v~~~~~a~~~~----~~---G~d~i~vs~~gg~~-~~~~--~~~~~~l~~i~~~~~~-~~~vi 281 (367)
.+..|+..+.-.++.. +-+.+++..+. .. |+|+|.++--..+. .... +.-++.+.++.+.+.. .+||+
T Consensus 91 ~~~~r~~~~~~~~iG~S~h~~~e~~~~~~~~~~~g~~gaDYi~~Gpvf~T~tK~~~~~~lG~~~l~~~~~~~~~~~iPv~ 170 (755)
T PRK09517 91 YTQARRLLPAHLELGLTIETLDQLEAVIAQCAETGVALPDVIGIGPVASTATKPDAPPALGVDGIAEIAAVAQDHGIASV 170 (755)
T ss_pred HHHHHHhcCCCCEEEEeCCCHHHHHHHHhhhccCCCCCCCEEEECCccccCCCCCCCCCCCHHHHHHHHHhcCcCCCCEE
Confidence 3445544332223333 35666665432 22 59999996422221 1121 2256778877776621 39999
Q ss_pred EecCCCCHHHHHHHHHcCCCEEEechHHH
Q 017718 282 LDGGVRRGTDVFKALALGASGIFIGRPVV 310 (367)
Q Consensus 282 a~GGI~~~~dv~kal~lGAd~V~ig~~~l 310 (367)
+-||| +.+++.+++..||++|.+-+.++
T Consensus 171 AiGGI-~~~~~~~~~~~Ga~giAvisai~ 198 (755)
T PRK09517 171 AIGGV-GLRNAAELAATGIDGLCVVSAIM 198 (755)
T ss_pred EECCC-CHHHHHHHHHcCCCEEEEehHhh
Confidence 99999 88999999999999999999886
|
|
| >PRK03170 dihydrodipicolinate synthase; Provisional | Back alignment and domain information |
|---|
Probab=96.17 E-value=0.94 Score=43.39 Aligned_cols=184 Identities=17% Similarity=0.160 Sum_probs=102.9
Q ss_pred cceEeCcccchhccCChhhHHHHHHHHHcCCceee-----cCCCCCCHHHHH-------hhCC--CceEEEEeecCCHHH
Q 017718 72 MPIMIAPTAMQKMAHPEGEYATARAASAAGTIMTL-----SSWSTSSVEEVA-------STGP--GIRFFQLYVYKDRNV 137 (367)
Q Consensus 72 ~Pi~iAPm~~~~l~~~~~e~~~a~aa~~~G~~~~v-----s~~~~~~~e~i~-------~~~~--~~~~~QLy~~~d~~~ 137 (367)
.|.++.|+.-.+-.+.++-..+.+-+.+.|+..++ |++...+.+|-. +..+ -+.+.++. ..+-+.
T Consensus 6 ~~~~~TPf~~dg~iD~~~l~~~i~~l~~~Gv~gi~~~Gs~GE~~~ls~~Er~~~~~~~~~~~~~~~~vi~gv~-~~~~~~ 84 (292)
T PRK03170 6 ITALVTPFKEDGSVDFAALRKLVDYLIANGTDGLVVVGTTGESPTLTHEEHEELIRAVVEAVNGRVPVIAGTG-SNSTAE 84 (292)
T ss_pred eeeeeCCcCCCCCcCHHHHHHHHHHHHHcCCCEEEECCcCCccccCCHHHHHHHHHHHHHHhCCCCcEEeecC-CchHHH
Confidence 36677787544444444555777778888876443 334456666532 2222 35666664 346677
Q ss_pred HHHHHHHHHHcCCcEEEEecCCCCCCchhHHhhhhcCCCCccccccccccccCccccccchhhHHHhhhccCccccHHHH
Q 017718 138 VAQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLTLKNFQGLDLGKMDEANDSGLAAYVAGQIDRSLSWKWL 217 (367)
Q Consensus 138 ~~~~l~ra~~~G~~ai~itvd~p~~g~r~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~l 217 (367)
+.++++.|+++|++++.+.. |.. ...+ ...+.+ -++.+
T Consensus 85 ~i~~a~~a~~~G~d~v~~~p--P~~-----------------~~~~-------------~~~i~~----------~~~~i 122 (292)
T PRK03170 85 AIELTKFAEKAGADGALVVT--PYY-----------------NKPT-------------QEGLYQ----------HFKAI 122 (292)
T ss_pred HHHHHHHHHHcCCCEEEECC--CcC-----------------CCCC-------------HHHHHH----------HHHHH
Confidence 78888999999999998732 211 0000 000111 12356
Q ss_pred HhhcCCCEEEEec-------CCHHHHHHHHHcCCcEEEEcCCCCCCCCCccchHHHHHHHHHHhcCCCcEEEecCCCCHH
Q 017718 218 QTITKLPILVKGV-------LTAEDARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGT 290 (367)
Q Consensus 218 ~~~~~~Pv~vK~v-------~~~~~a~~~~~~G~d~i~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~~~via~GGI~~~~ 290 (367)
.+.+++||++=.. .+.+..+.+.+.+ .|+-. .++. .....+.++.+..++++.|+. | ...
T Consensus 123 a~~~~~pv~lYn~P~~~g~~l~~~~~~~L~~~p--~v~gi------K~s~-~d~~~~~~~~~~~~~~~~v~~-G---~d~ 189 (292)
T PRK03170 123 AEATDLPIILYNVPGRTGVDILPETVARLAEHP--NIVGI------KEAT-GDLERVSELIELVPDDFAVYS-G---DDA 189 (292)
T ss_pred HhcCCCCEEEEECccccCCCCCHHHHHHHHcCC--CEEEE------EECC-CCHHHHHHHHHhCCCCeEEEE-C---ChH
Confidence 6667889887654 4567777775542 22210 1111 123444445444443454443 3 234
Q ss_pred HHHHHHHcCCCEEEechHHHH
Q 017718 291 DVFKALALGASGIFIGRPVVY 311 (367)
Q Consensus 291 dv~kal~lGAd~V~ig~~~l~ 311 (367)
.++..+.+|+++++-|...++
T Consensus 190 ~~~~~l~~G~~G~is~~~n~~ 210 (292)
T PRK03170 190 LALPFLALGGVGVISVAANVA 210 (292)
T ss_pred hHHHHHHcCCCEEEEhHHhhh
Confidence 467788999999998876544
|
|
| >TIGR02129 hisA_euk phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase, eukaryotic type | Back alignment and domain information |
|---|
Probab=96.04 E-value=0.034 Score=52.37 Aligned_cols=71 Identities=14% Similarity=0.151 Sum_probs=51.3
Q ss_pred HHHHHHHHcCCcEEEEcCCCCCCCCC--ccchHHHHHHHHHHhcCCCcEEEecCCCCHHHHHHHHHc--CCCEEEechHH
Q 017718 234 EDARIAVQAGAAGIIVSNHGARQLDY--VPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALAL--GASGIFIGRPV 309 (367)
Q Consensus 234 ~~a~~~~~~G~d~i~vs~~gg~~~~~--~~~~~~~l~~i~~~~~~~~~via~GGI~~~~dv~kal~l--GAd~V~ig~~~ 309 (367)
+.++.+.+. +..|++.+-. .|+ .-+.++.+.++.+.+ ++|||++||+.+.+|+.++-.+ |...+.+|+++
T Consensus 162 e~~~~~~~~-~~~il~TdI~---rDGtl~G~dlel~~~l~~~~--~ipVIASGGv~s~eDi~~l~~~~~g~~~aIvG~Al 235 (253)
T TIGR02129 162 ETLEELSKY-CDEFLIHAAD---VEGLCKGIDEELVSKLGEWS--PIPITYAGGAKSIDDLDLVDELSKGKVDLTIGSAL 235 (253)
T ss_pred HHHHHHHhh-CCEEEEeeec---ccCccccCCHHHHHHHHhhC--CCCEEEECCCCCHHHHHHHHHhcCCCCcEEeeehH
Confidence 445666666 8888885421 111 225778888888776 8999999999999999988555 55557788876
Q ss_pred H
Q 017718 310 V 310 (367)
Q Consensus 310 l 310 (367)
+
T Consensus 236 f 236 (253)
T TIGR02129 236 D 236 (253)
T ss_pred H
Confidence 4
|
This enzyme acts in the biosynthesis of histidine and has been characterized in S. cerevisiae and Arabidopsis where it complements the E. coli HisA gene. In eukaryotes the gene is known as HIS6. In bacteria, this gene is found in Fibrobacter succinogenes, presumably due to lateral gene transfer from plants in the rumen gut. |
| >PTZ00314 inosine-5'-monophosphate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=96.01 E-value=0.026 Score=58.40 Aligned_cols=246 Identities=18% Similarity=0.213 Sum_probs=134.0
Q ss_pred ccccceeecccc-CCCCCCccceeEc-CeeeccceEeCcccchhccCChhhHHHHHHHHHcCCceeecCCCCCCHHHHHh
Q 017718 42 AFSRILFRPRIL-IDVSKIDMNTTVL-GFKISMPIMIAPTAMQKMAHPEGEYATARAASAAGTIMTLSSWSTSSVEEVAS 119 (367)
Q Consensus 42 ~~~~i~l~pr~l-~~~~~vd~st~i~-g~~l~~Pi~iAPm~~~~l~~~~~e~~~a~aa~~~G~~~~vs~~~~~~~e~i~~ 119 (367)
.||++.|+|... ...+++|++|.+- ...++.||+-|||...+ |..+|.+.++.|-..+++. ++++|+..+
T Consensus 19 t~ddv~l~p~~~~~~~~~v~~~t~l~~~~~l~~Pii~a~M~~vt------~~~ma~a~a~~GglGvi~~--~~~~e~~~~ 90 (495)
T PTZ00314 19 TYDDVILLPGYIDFSRDDVDLSTRLTRNIRLKIPIVSSPMDTVT------EHKMAIAMALMGGIGVIHN--NCSIEEQVE 90 (495)
T ss_pred CccceEecccccccccccccccccccCCcccCCceeecCccccc------cHHHHHHHHHCCCeEEecC--CCCHHHHHH
Confidence 499999999754 2446789988875 46799999999997664 7799999999998888853 567776543
Q ss_pred hCC-----Cc----eEEEEeecCCHHHHHHHHHHHHHcCCcEEEEecCC-----CCCCchhHHhhhhcCCCCcccccccc
Q 017718 120 TGP-----GI----RFFQLYVYKDRNVVAQLVRRAERAGFKAIALTVDT-----PRLGRREADIKNRFTLPPFLTLKNFQ 185 (367)
Q Consensus 120 ~~~-----~~----~~~QLy~~~d~~~~~~~l~ra~~~G~~ai~itvd~-----p~~g~r~~~~~~~~~~p~~~~~~~~~ 185 (367)
... .. ..+-+.+ .....++++...+.++..+.|+-+- .+.-...+|++..- ........+.
T Consensus 91 ~v~kvk~~e~g~i~dpvtv~p---d~tv~eA~~lm~~~~~s~vpVvd~~~~~gkLvGIVt~~DL~~~~--~~~~~V~diM 165 (495)
T PTZ00314 91 EVRKVKRFENGFIMDPYVLSP---NHTVADVLEIKEKKGFSSILITVDGKVGGKLLGIVTSRDIDFVK--DKSTPVSEVM 165 (495)
T ss_pred HHhhccccccccccCCeecCC---CCCHHHHHHHHHHcCCcEEEEEeCCccCCeEEEEEEHHHHhhcc--cCCCCHHHhh
Confidence 211 00 0111221 2233455666677788777764331 11001223433100 0000000000
Q ss_pred cc--ccCcccc-ccchhhHHHhhhcc---------Ccc----ccHHHHHhhc---------CCCEEEEec--CC---HHH
Q 017718 186 GL--DLGKMDE-ANDSGLAAYVAGQI---------DRS----LSWKWLQTIT---------KLPILVKGV--LT---AED 235 (367)
Q Consensus 186 ~~--~~~~~~~-~~~~~~~~~~~~~~---------d~~----~~~~~l~~~~---------~~Pv~vK~v--~~---~~~ 235 (367)
.. ....... .......+.+.... +.. ++.+.+.+.. ...+.|... .+ .+.
T Consensus 166 t~~~~lvtv~~~~sl~eAl~lm~e~~i~~LPVVd~~g~liGIIT~~DIl~~~~~p~a~~D~~GrL~Vgaavg~~~~~~~~ 245 (495)
T PTZ00314 166 TPREKLVVGNTPISLEEANEVLRESRKGKLPIVNDNGELVALVSRSDLKKNRGYPNASLDSNGQLLVGAAISTRPEDIER 245 (495)
T ss_pred CCcCCceEeCCCCCHHHHHHHHHHcCCCeEEEEcCCCcEEEEEEehHhhhcccCchhhhccCCCEEEEEEECCCHHHHHH
Confidence 00 0000000 00000000000000 000 0111121111 122333222 22 366
Q ss_pred HHHHHHcCCcEEEEcCCCCCCCCCccchHHHHHHHHHHhcCCCcEEEecCCCCHHHHHHHHHcCCCEEEec
Q 017718 236 ARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFIG 306 (367)
Q Consensus 236 a~~~~~~G~d~i~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~~~via~GGI~~~~dv~kal~lGAd~V~ig 306 (367)
++.+.++|+|.|.+....|++ ...++.+.++++..+ +++|++ |.|.|.+++..++.+|||++-+|
T Consensus 246 ~~~l~~ag~d~i~id~a~G~s----~~~~~~i~~ik~~~~-~~~v~a-G~V~t~~~a~~~~~aGad~I~vg 310 (495)
T PTZ00314 246 AAALIEAGVDVLVVDSSQGNS----IYQIDMIKKLKSNYP-HVDIIA-GNVVTADQAKNLIDAGADGLRIG 310 (495)
T ss_pred HHHHHHCCCCEEEEecCCCCc----hHHHHHHHHHHhhCC-CceEEE-CCcCCHHHHHHHHHcCCCEEEEC
Confidence 889999999999997533322 224678888887653 578777 99999999999999999999764
|
|
| >cd00381 IMPDH IMPDH: The catalytic domain of the inosine monophosphate dehydrogenase | Back alignment and domain information |
|---|
Probab=95.99 E-value=0.037 Score=54.15 Aligned_cols=68 Identities=22% Similarity=0.304 Sum_probs=52.3
Q ss_pred HHHHHHHHHcCCcEEEEcCCCCCCCCCccchHHHHHHHHHHhcCCCcEEEecCCCCHHHHHHHHHcCCCEEEec
Q 017718 233 AEDARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFIG 306 (367)
Q Consensus 233 ~~~a~~~~~~G~d~i~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~~~via~GGI~~~~dv~kal~lGAd~V~ig 306 (367)
.+.++.+.++|+|.|+++.+.|.. ....+.+.++++..+ +++|++ |.+.+.+++.+++.+|||+|.+|
T Consensus 96 ~~~~~~l~eagv~~I~vd~~~G~~----~~~~~~i~~ik~~~p-~v~Vi~-G~v~t~~~A~~l~~aGaD~I~vg 163 (325)
T cd00381 96 KERAEALVEAGVDVIVIDSAHGHS----VYVIEMIKFIKKKYP-NVDVIA-GNVVTAEAARDLIDAGADGVKVG 163 (325)
T ss_pred HHHHHHHHhcCCCEEEEECCCCCc----HHHHHHHHHHHHHCC-CceEEE-CCCCCHHHHHHHHhcCCCEEEEC
Confidence 355888999999999986533321 234567777776553 588887 99999999999999999999874
|
IMPDH catalyzes the NAD-dependent oxidation of inosine 5'-monophosphate (IMP) to xanthosine 5' monophosphate (XMP). It is a rate-limiting step in the de novo synthesis of the guanine nucleotides. There is often a CBS domain inserted in the middle of this domain, which is proposed to play a regulatory role. IMPDH is a key enzyme in the regulation of cell proliferation and differentiation. It has been identified as an attractive target for developing chemotherapeutic agents. |
| >cd00947 TBP_aldolase_IIB Tagatose-1,6-bisphosphate (TBP) aldolase and related Type B Class II aldolases | Back alignment and domain information |
|---|
Probab=95.95 E-value=1.6 Score=41.73 Aligned_cols=109 Identities=26% Similarity=0.349 Sum_probs=74.9
Q ss_pred CCHHHHHHHHH-cCCcEEEEcC---CCCCCCCCccchHHHHHHHHHHhcCCCcEEEecCCCCH-HHHHHHHHcCCCEEEe
Q 017718 231 LTAEDARIAVQ-AGAAGIIVSN---HGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRG-TDVFKALALGASGIFI 305 (367)
Q Consensus 231 ~~~~~a~~~~~-~G~d~i~vs~---~gg~~~~~~~~~~~~l~~i~~~~~~~~~via~GGI~~~-~dv~kal~lGAd~V~i 305 (367)
.++++|+...+ .|+|.+.++. ||-+......-.++.|.+|.+.+ ++|+..=||=..+ +++.+++.+|..-|=+
T Consensus 148 T~pe~a~~Fv~~TgvD~LAvsiGt~HG~Y~~~~p~L~~~~L~~i~~~~--~vPLVlHGgSG~~~e~~~~ai~~Gi~KiNi 225 (276)
T cd00947 148 TDPEEAEEFVEETGVDALAVAIGTSHGAYKGGEPKLDFDRLKEIAERV--NVPLVLHGGSGIPDEQIRKAIKLGVCKINI 225 (276)
T ss_pred CCHHHHHHHHHHHCCCEEEeccCccccccCCCCCccCHHHHHHHHHHh--CCCEEEeCCCCCCHHHHHHHHHcCCeEEEe
Confidence 57888877664 6999999974 55432111123678899999988 7999998887776 5588899999999999
Q ss_pred chHHHHHhhc-------cC------hHHHHHHHHHHHHHHHHHHHHhCC
Q 017718 306 GRPVVYSLAA-------EG------EKGVRRVLEMLREEFELAMALSGC 341 (367)
Q Consensus 306 g~~~l~~l~~-------~G------~~~v~~~i~~l~~el~~~m~~~G~ 341 (367)
+|.+..+... .. ..-.....+.+++.++..|..+|.
T Consensus 226 ~T~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~s 274 (276)
T cd00947 226 NTDLRLAFTAALREYLAENPKEFDPRKYLAPAIEAVKEVVKHKMELFGS 274 (276)
T ss_pred ChHHHHHHHHHHHHHHHhCCCcCCHHHHHHHHHHHHHHHHHHHHHHhCC
Confidence 9977654211 00 011333445566777777777764
|
TBP aldolase is a tetrameric class II aldolase that catalyzes the reversible condensation of dihydroxyacetone phosphate with glyceraldehyde 3-phsophate to produce tagatose 1,6-bisphosphate. There is an absolute requirement for a divalent metal ion, usually zinc, and in addition the enzymes are activated by monovalent cations such as Na+. The type A and type B Class II FBPA's differ in the presence and absence of distinct indels in the sequence that result in differing loop lengths in the structures. |
| >PLN02417 dihydrodipicolinate synthase | Back alignment and domain information |
|---|
Probab=95.91 E-value=0.061 Score=51.47 Aligned_cols=92 Identities=18% Similarity=0.292 Sum_probs=59.3
Q ss_pred HHHHHHcCCcEEEEcCCCCCCCCCcc-chHHHHHHHHHHhcCCCcEEEecCCCCHHHHHH----HHHcCCCEEEechHHH
Q 017718 236 ARIAVQAGAAGIIVSNHGARQLDYVP-ATIMALEEVVKATQGRIPVFLDGGVRRGTDVFK----ALALGASGIFIGRPVV 310 (367)
Q Consensus 236 a~~~~~~G~d~i~vs~~gg~~~~~~~-~~~~~l~~i~~~~~~~~~via~GGI~~~~dv~k----al~lGAd~V~ig~~~l 310 (367)
++.+.+.|+++|.+.|+.|-...-.. -..+.+..+++.+.+++||++.=|=.+..|+++ +-.+|||+|++-.|+.
T Consensus 28 i~~l~~~Gv~Gi~~~GstGE~~~ls~~Er~~~~~~~~~~~~~~~pvi~gv~~~~t~~~i~~a~~a~~~Gadav~~~~P~y 107 (280)
T PLN02417 28 VNMQIENGAEGLIVGGTTGEGQLMSWDEHIMLIGHTVNCFGGKIKVIGNTGSNSTREAIHATEQGFAVGMHAALHINPYY 107 (280)
T ss_pred HHHHHHcCCCEEEECccCcchhhCCHHHHHHHHHHHHHHhCCCCcEEEECCCccHHHHHHHHHHHHHcCCCEEEEcCCcc
Confidence 45677899999999766542111111 123445556666677899998666556666665 3458999999999986
Q ss_pred HHhhccChHHHHHHHHHHHH
Q 017718 311 YSLAAEGEKGVRRVLEMLRE 330 (367)
Q Consensus 311 ~~l~~~G~~~v~~~i~~l~~ 330 (367)
+. ..++++.++++.+.+
T Consensus 108 ~~---~~~~~i~~~f~~va~ 124 (280)
T PLN02417 108 GK---TSQEGLIKHFETVLD 124 (280)
T ss_pred CC---CCHHHHHHHHHHHHh
Confidence 63 235655555555433
|
|
| >cd00377 ICL_PEPM Members of the ICL/PEPM enzyme family catalyze either P-C or C-C bond formation/cleavage | Back alignment and domain information |
|---|
Probab=95.90 E-value=0.18 Score=47.27 Aligned_cols=93 Identities=19% Similarity=0.298 Sum_probs=52.9
Q ss_pred HHHhhcCCCEEEEecC---CH----HHHHHHHHcCCcEEEEcCC-----CCCC-CCCccch---HHHHHHHHHHhcC--C
Q 017718 216 WLQTITKLPILVKGVL---TA----EDARIAVQAGAAGIIVSNH-----GARQ-LDYVPAT---IMALEEVVKATQG--R 277 (367)
Q Consensus 216 ~l~~~~~~Pv~vK~v~---~~----~~a~~~~~~G~d~i~vs~~-----gg~~-~~~~~~~---~~~l~~i~~~~~~--~ 277 (367)
.+.....+||++-+-. +. +.++.+.++|+++|.+-.. .|+. ...-.+. .+.|..++++..+ +
T Consensus 63 ~I~~~~~~Pv~~D~~~G~g~~~~~~~~v~~~~~~G~~gv~iED~~~~k~~g~~~~~~~~~~ee~~~ki~aa~~a~~~~~~ 142 (243)
T cd00377 63 RIARAVDLPVIADADTGYGNALNVARTVRELEEAGAAGIHIEDQVGPKKCGHHGGKVLVPIEEFVAKIKAARDARDDLPD 142 (243)
T ss_pred HHHhhccCCEEEEcCCCCCCHHHHHHHHHHHHHcCCEEEEEecCCCCccccCCCCCeecCHHHHHHHHHHHHHHHhccCC
Confidence 5556668998776543 33 3467888999999999321 1110 0011222 3344445555544 6
Q ss_pred CcEEEe--------cCCCCHHHHHH-HHHcCCCEEEechH
Q 017718 278 IPVFLD--------GGVRRGTDVFK-ALALGASGIFIGRP 308 (367)
Q Consensus 278 ~~via~--------GGI~~~~dv~k-al~lGAd~V~ig~~ 308 (367)
++|++= .|+...-.-.+ +..+|||+|++-.+
T Consensus 143 ~~IiARTDa~~~~~~~~~eai~Ra~ay~~AGAD~v~v~~~ 182 (243)
T cd00377 143 FVIIARTDALLAGEEGLDEAIERAKAYAEAGADGIFVEGL 182 (243)
T ss_pred eEEEEEcCchhccCCCHHHHHHHHHHHHHcCCCEEEeCCC
Confidence 888885 23333333333 33489999998754
|
Known members are phosphoenolpyruvate mutase (PEPM), phosphonopyruvate hydrolase (PPH), carboxyPEP mutase (CPEP mutase), oxaloacetate hydrolase (OAH), isocitrate lyase (ICL), and 2-methylisocitrate lyase (MICL). Isocitrate lyase (ICL) catalyzes the conversion of isocitrate to succinate and glyoxylate, the first committed step in the glyoxylate pathway. This carbon-conserving pathway is present in most prokaryotes, lower eukaryotes and plants, but has not been observed in vertebrates. PEP mutase (PEPM) turns phosphoenolpyruvate (PEP) into phosphonopyruvate (P-pyr), an important intermediate in the formation of organophosphonates, which function as antibiotics or play a role in pathogenesis or signaling. P-pyr can be hydrolyzed by phosphonopyruvate hydrolase (PPH) to from pyruvate and phosphate. Oxaloacetate acetylhydrolase (OAH) catalyzes the hydrolytic cleavage of oxaloacetate to |
| >PLN02716 nicotinate-nucleotide diphosphorylase (carboxylating) | Back alignment and domain information |
|---|
Probab=95.90 E-value=0.061 Score=52.03 Aligned_cols=80 Identities=20% Similarity=0.200 Sum_probs=60.4
Q ss_pred ecCCHHHHHHHHH------cCCcEEEEcCCCCCCCCCccchHHHHHHHHHHhcCCCcEEEecCCCCHHHHHHHHHcCCCE
Q 017718 229 GVLTAEDARIAVQ------AGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASG 302 (367)
Q Consensus 229 ~v~~~~~a~~~~~------~G~d~i~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~~~via~GGI~~~~dv~kal~lGAd~ 302 (367)
.+.+.++++.+.+ +|+|.|.+.|--- ...-...+.+.+.+..+.+++++++-++|||. .+.+.++..+|.|.
T Consensus 209 Ev~tleea~ea~~~~~~~~agaDiImLDnm~~-~~~~~~~~~e~l~~av~~~~~~~~lEaSGGIt-~~ni~~yA~tGVD~ 286 (308)
T PLN02716 209 ETRTLEEVKEVLEYLSDTKTSLTRVMLDNMVV-PLENGDVDVSMLKEAVELINGRFETEASGNVT-LDTVHKIGQTGVTY 286 (308)
T ss_pred EECCHHHHHHHHHhcccccCCCCEEEeCCCcc-cccccCCCHHHHHHHHHhhCCCceEEEECCCC-HHHHHHHHHcCCCE
Confidence 4678999999999 9999999988300 00111225566667666666678999999994 68888898999999
Q ss_pred EEechHHH
Q 017718 303 IFIGRPVV 310 (367)
Q Consensus 303 V~ig~~~l 310 (367)
+.+|.+..
T Consensus 287 Is~Galth 294 (308)
T PLN02716 287 ISSGALTH 294 (308)
T ss_pred EEeCcccc
Confidence 99998553
|
|
| >PRK13398 3-deoxy-7-phosphoheptulonate synthase; Provisional | Back alignment and domain information |
|---|
Probab=95.87 E-value=0.41 Score=45.54 Aligned_cols=88 Identities=24% Similarity=0.375 Sum_probs=56.6
Q ss_pred hcCCCEEEEecC--CHHH----HHHHHHcCCcEEEEcCCCCCCCCCcc-c--hHHHHHHHHHHhcCCCcEEEecCCCC--
Q 017718 220 ITKLPILVKGVL--TAED----ARIAVQAGAAGIIVSNHGARQLDYVP-A--TIMALEEVVKATQGRIPVFLDGGVRR-- 288 (367)
Q Consensus 220 ~~~~Pv~vK~v~--~~~~----a~~~~~~G~d~i~vs~~gg~~~~~~~-~--~~~~l~~i~~~~~~~~~via~GGI~~-- 288 (367)
.+++||++|..+ +.++ ++.+...|-.-+++--.|++....-+ . .+..++.+++.. .+||+.|..=..
T Consensus 132 ~~gkPV~lk~G~~~s~~e~~~A~e~i~~~Gn~~i~L~~rG~~t~~~Y~~~~vdl~~i~~lk~~~--~~pV~~D~sHs~G~ 209 (266)
T PRK13398 132 KTKKPILLKRGMSATLEEWLYAAEYIMSEGNENVVLCERGIRTFETYTRNTLDLAAVAVIKELS--HLPIIVDPSHATGR 209 (266)
T ss_pred cCCCcEEEeCCCCCCHHHHHHHHHHHHhcCCCeEEEEECCCCCCCCCCHHHHHHHHHHHHHhcc--CCCEEEeCCCcccc
Confidence 468999999873 5555 45566678766666444554442222 2 334455555443 689999643322
Q ss_pred ----HHHHHHHHHcCCCEEEechHH
Q 017718 289 ----GTDVFKALALGASGIFIGRPV 309 (367)
Q Consensus 289 ----~~dv~kal~lGAd~V~ig~~~ 309 (367)
...+..++++||++++|-+-+
T Consensus 210 ~~~v~~~~~aAva~Ga~Gl~iE~H~ 234 (266)
T PRK13398 210 RELVIPMAKAAIAAGADGLMIEVHP 234 (266)
T ss_pred hhhHHHHHHHHHHcCCCEEEEeccC
Confidence 466778889999999999755
|
|
| >COG0106 HisA Phosphoribosylformimino-5-aminoimidazole carboxamide ribonucleotide (ProFAR) isomerase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=95.85 E-value=0.069 Score=49.74 Aligned_cols=73 Identities=30% Similarity=0.423 Sum_probs=60.3
Q ss_pred HHHHHHHHHcCCcEEEEcC-CCCCCCCCccchHHHHHHHHHHhcCCCcEEEecCCCCHHHHHHHHHcCCCEEEechHH
Q 017718 233 AEDARIAVQAGAAGIIVSN-HGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFIGRPV 309 (367)
Q Consensus 233 ~~~a~~~~~~G~d~i~vs~-~gg~~~~~~~~~~~~l~~i~~~~~~~~~via~GGI~~~~dv~kal~lGAd~V~ig~~~ 309 (367)
.+.|+...+.|+..+.+-. .|. ..+++-..+.+.+|.+.+ .+||=.-||||+-+++.+.|.+|++-|.+|+..
T Consensus 34 ~~~a~~~~~~Ga~~lHlVDLdgA--~~g~~~n~~~i~~i~~~~--~~~vQvGGGIRs~~~v~~ll~~G~~rViiGt~a 107 (241)
T COG0106 34 LEVAKKWSDQGAEWLHLVDLDGA--KAGGPRNLEAIKEILEAT--DVPVQVGGGIRSLEDVEALLDAGVARVIIGTAA 107 (241)
T ss_pred HHHHHHHHHcCCcEEEEeecccc--ccCCcccHHHHHHHHHhC--CCCEEeeCCcCCHHHHHHHHHCCCCEEEEecce
Confidence 4678899999999988632 121 224556788999999887 899999999999999999999999999999943
|
|
| >TIGR01302 IMP_dehydrog inosine-5'-monophosphate dehydrogenase | Back alignment and domain information |
|---|
Probab=95.81 E-value=0.037 Score=56.62 Aligned_cols=249 Identities=19% Similarity=0.263 Sum_probs=130.7
Q ss_pred ccccceeeccccC-CCCCCccceeEc-CeeeccceEeCcccchhccCChhhHHHHHHHHHcCCceeecCCCCCCHHHHHh
Q 017718 42 AFSRILFRPRILI-DVSKIDMNTTVL-GFKISMPIMIAPTAMQKMAHPEGEYATARAASAAGTIMTLSSWSTSSVEEVAS 119 (367)
Q Consensus 42 ~~~~i~l~pr~l~-~~~~vd~st~i~-g~~l~~Pi~iAPm~~~~l~~~~~e~~~a~aa~~~G~~~~vs~~~~~~~e~i~~ 119 (367)
.||++.|+|.... ..+++|++|.+- +.+++.|++-|||.-.+ |..++.+.++.|-.-++.. ++++|+..+
T Consensus 3 t~ddv~l~p~~~~~~~~~~~~~~~~~~~~~l~~p~~s~~mdtvT------e~ema~~ma~~gg~GvI~~--n~~~e~q~~ 74 (450)
T TIGR01302 3 TFDDVLLLPGFIDVEPDDVDLSTRITRNIKLNIPILSSPMDTVT------ESRMAIAMAREGGIGVIHR--NMSIEEQAE 74 (450)
T ss_pred CccceEecccccccCccccccccccccccCcCCCeeecCCCccC------HHHHHHHHHhcCCCceeec--CCCHHHHHH
Confidence 4999999997552 446889999875 78999999999996554 6678777777776555542 344543221
Q ss_pred ----hCC--CceEEEEeecCCHHHHHHHHHHHHHcCCcEEEEecCCC----CCC-chhHHhhhhcCCCCcccccccccc-
Q 017718 120 ----TGP--GIRFFQLYVYKDRNVVAQLVRRAERAGFKAIALTVDTP----RLG-RREADIKNRFTLPPFLTLKNFQGL- 187 (367)
Q Consensus 120 ----~~~--~~~~~QLy~~~d~~~~~~~l~ra~~~G~~ai~itvd~p----~~g-~r~~~~~~~~~~p~~~~~~~~~~~- 187 (367)
... ....-++..-....-..++++...+.++..+.|.=+.. ..| -..+|+..... + ......+...
T Consensus 75 ~V~~Vk~~~~~~~~~~vtl~~~~tv~eal~~m~~~~~s~lpVvd~~~~~~~lvGIVt~rDL~~~~~-~-~~~V~dvm~~~ 152 (450)
T TIGR01302 75 QVKRVKRAENGIISDPVTISPETTVADVLELMERKGISGIPVVEDGDMTGKLVGIITKRDIRFVKD-K-GKPVSEVMTRE 152 (450)
T ss_pred HHhhhccccCceecCceEeCCCCCHHHHHHHHHHcCCCEEEEEeCCCCCCeEEEEEEHHHHhhhhc-C-CCCHHHhhCCC
Confidence 111 11000111111223344566667777887776643320 001 11233321000 0 0000000000
Q ss_pred ccCcccc-ccchhhHHHhhhcc---------Ccc----ccHHHHHhhcCCC---------EEEEec--C---CHHHHHHH
Q 017718 188 DLGKMDE-ANDSGLAAYVAGQI---------DRS----LSWKWLQTITKLP---------ILVKGV--L---TAEDARIA 239 (367)
Q Consensus 188 ~~~~~~~-~~~~~~~~~~~~~~---------d~~----~~~~~l~~~~~~P---------v~vK~v--~---~~~~a~~~ 239 (367)
....... .......+.+.... +.. ++.+.+.+....| ++|-.. . +.+.++.+
T Consensus 153 ~~~~V~~~~sl~eal~~m~~~~~~~lpVVDe~G~lvGiVT~~DIl~~~~~~~~~~d~~g~l~V~aav~~~~~~~~r~~~L 232 (450)
T TIGR01302 153 EVITVPEGIDLEEALKVLHEHRIEKLPVVDKNGELVGLITMKDIVKRRKFPHASKDENGRLIVGAAVGTREFDKERAEAL 232 (450)
T ss_pred CCEEECCCCcHHHHHHHHHHcCCCeEEEEcCCCcEEEEEEhHHhhhcccCCcceEeCCCCEEEEEEecCchhHHHHHHHH
Confidence 0000000 00000000000000 000 1222221111112 222222 1 24678899
Q ss_pred HHcCCcEEEEcCCCCCCCCCccchHHHHHHHHHHhcCCCcEEEecCCCCHHHHHHHHHcCCCEEEec
Q 017718 240 VQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFIG 306 (367)
Q Consensus 240 ~~~G~d~i~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~~~via~GGI~~~~dv~kal~lGAd~V~ig 306 (367)
.++|+|.|.+..+-|+ ....++.+.++++... ++||++ |+|.|.+++..++.+|||+|-+|
T Consensus 233 ~~aG~d~I~vd~a~g~----~~~~~~~i~~i~~~~~-~~~vi~-G~v~t~~~a~~l~~aGad~i~vg 293 (450)
T TIGR01302 233 VKAGVDVIVIDSSHGH----SIYVIDSIKEIKKTYP-DLDIIA-GNVATAEQAKALIDAGADGLRVG 293 (450)
T ss_pred HHhCCCEEEEECCCCc----HhHHHHHHHHHHHhCC-CCCEEE-EeCCCHHHHHHHHHhCCCEEEEC
Confidence 9999999999763332 1346677888877643 688888 99999999999999999999766
|
This model describes a rather tightly conserved cluster of IMP dehydrogenase sequences, many of which are characterized. The model excludes two related families of proteins proposed also to be IMP dehydrogenases, but without characterized members. These are related families are the subject of separate models. |
| >PLN02274 inosine-5'-monophosphate dehydrogenase | Back alignment and domain information |
|---|
Probab=95.80 E-value=0.042 Score=56.97 Aligned_cols=246 Identities=16% Similarity=0.153 Sum_probs=128.9
Q ss_pred ccccceeeccccC-CCCCCccceeEc-CeeeccceEeCcccchhccCChhhHHHHHHHHHcCCceeecCCCCCCHHHHHh
Q 017718 42 AFSRILFRPRILI-DVSKIDMNTTVL-GFKISMPIMIAPTAMQKMAHPEGEYATARAASAAGTIMTLSSWSTSSVEEVAS 119 (367)
Q Consensus 42 ~~~~i~l~pr~l~-~~~~vd~st~i~-g~~l~~Pi~iAPm~~~~l~~~~~e~~~a~aa~~~G~~~~vs~~~~~~~e~i~~ 119 (367)
.||++.|+|.... ..+++|++|.+- ...+..||+-|||...+ +..++.+..+.|...++.. +.+.|+...
T Consensus 23 tfddv~l~p~~~~~~~~~~~~~t~lt~~~~~~~Pivsa~M~~vt------~~~lA~Ama~aGGiGfI~~--~as~E~q~~ 94 (505)
T PLN02274 23 TYDDVIFHPGYIDFPADAVDLSTRLSRNIPLSIPCVSSPMDTVT------ESDMAIAMAALGGIGIVHY--NNTAEEQAA 94 (505)
T ss_pred CccceEecccccCcCCcccccccccccccCcCCCEeccCCcccc------hHHHHHHHHhCCCeEEEcC--CCCHHHHHH
Confidence 5999999997552 446788887764 36688999999997664 6789999999987656653 345554332
Q ss_pred h----C--CC---ceEEEEeecCCHHHHHHHHHHHHHcCCcEEEEecC-----CCCCCchhHHhhhhcCCCCcccccccc
Q 017718 120 T----G--PG---IRFFQLYVYKDRNVVAQLVRRAERAGFKAIALTVD-----TPRLGRREADIKNRFTLPPFLTLKNFQ 185 (367)
Q Consensus 120 ~----~--~~---~~~~QLy~~~d~~~~~~~l~ra~~~G~~ai~itvd-----~p~~g~r~~~~~~~~~~p~~~~~~~~~ 185 (367)
. . .. ...+.+. ......++++...+.++..+.|+=+ .++.-.-.+|++..- .+. .....+.
T Consensus 95 ~Irkvk~~~~gmi~dpvtV~---pd~tV~dA~~lm~~~~~~~lpVvD~~~~~GklvGIVT~~DL~~v~-~~~-~~V~eIM 169 (505)
T PLN02274 95 IVRKAKSRRVGFVSDPVVKS---PSSTISSLDELKASRGFSSVCVTETGTMGSKLLGYVTKRDWDFVN-DRE-TKLSEVM 169 (505)
T ss_pred HHHHhhcccccccCCCeeeC---CCCcHHHHHHHHHhcCCceEEEEeCCCcCCeEEEEEEHHHHhhcc-ccC-CcHHHHh
Confidence 1 1 10 0111121 2223445566667778877776432 111101123332100 000 0000000
Q ss_pred ccc--cCcccc-ccchhhHHHhhhcc---------Ccc----ccHHHHHhhcC------------CCEEEEe--cC---C
Q 017718 186 GLD--LGKMDE-ANDSGLAAYVAGQI---------DRS----LSWKWLQTITK------------LPILVKG--VL---T 232 (367)
Q Consensus 186 ~~~--~~~~~~-~~~~~~~~~~~~~~---------d~~----~~~~~l~~~~~------------~Pv~vK~--v~---~ 232 (367)
... ...... .......+.+.... +.. ++.+.+.+... ..+.+.- .. .
T Consensus 170 t~~~~lvtv~~~~sL~eAl~~m~~~~~~~LPVVD~~g~LvGvITr~DIlk~~~~p~~~~~~~d~~~~l~vgaavg~~~~~ 249 (505)
T PLN02274 170 TSDDDLVTAPAGIDLEEAEAVLKDSKKGKLPLVNEDGELVDLVTRTDVKRVKGYPKLGKPSVGKDGKLLVGAAIGTRESD 249 (505)
T ss_pred ccCCCcEEECCCCCHHHHHHHHHHcCCCEEEEEcCCCeEEEEEEHHHHHHHhhCcCccccccCCCCCEEEEEEEcCCccH
Confidence 000 000000 00000000000000 001 12221111111 1233322 12 2
Q ss_pred HHHHHHHHHcCCcEEEEcCCCCCCCCCccchHHHHHHHHHHhcCCCcEEEecCCCCHHHHHHHHHcCCCEEEec
Q 017718 233 AEDARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFIG 306 (367)
Q Consensus 233 ~~~a~~~~~~G~d~i~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~~~via~GGI~~~~dv~kal~lGAd~V~ig 306 (367)
.+-++.+.++|+|.|.+..+.|+ ....++.+.++++..+ +++||+ |+|.|.+++..++.+|||+|.+|
T Consensus 250 ~~r~~~l~~ag~d~i~iD~~~g~----~~~~~~~i~~ik~~~p-~~~vi~-g~v~t~e~a~~a~~aGaD~i~vg 317 (505)
T PLN02274 250 KERLEHLVKAGVDVVVLDSSQGD----SIYQLEMIKYIKKTYP-ELDVIG-GNVVTMYQAQNLIQAGVDGLRVG 317 (505)
T ss_pred HHHHHHHHHcCCCEEEEeCCCCC----cHHHHHHHHHHHHhCC-CCcEEE-ecCCCHHHHHHHHHcCcCEEEEC
Confidence 46689999999999999763332 1345688888887653 355554 88999999999999999999775
|
|
| >PRK09195 gatY tagatose-bisphosphate aldolase; Reviewed | Back alignment and domain information |
|---|
Probab=95.73 E-value=2.1 Score=41.21 Aligned_cols=109 Identities=18% Similarity=0.272 Sum_probs=73.4
Q ss_pred CCHHHHHHHH-HcCCcEEEEcC---CCCCCCCCccchHHHHHHHHHHhcCCCcEEEecCCCC-HHHHHHHHHcCCCEEEe
Q 017718 231 LTAEDARIAV-QAGAAGIIVSN---HGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRR-GTDVFKALALGASGIFI 305 (367)
Q Consensus 231 ~~~~~a~~~~-~~G~d~i~vs~---~gg~~~~~~~~~~~~l~~i~~~~~~~~~via~GGI~~-~~dv~kal~lGAd~V~i 305 (367)
.++++|+... +.|+|.+-++. ||-+.. ...-.++.|.+|.+.+ ++|+..=||=.. -+++.|++.+|..-|=+
T Consensus 155 T~peea~~Fv~~TgvD~LAvaiGt~HG~y~~-~p~Ld~~~L~~I~~~~--~vPLVLHGgSG~~~e~~~~ai~~Gi~KiNi 231 (284)
T PRK09195 155 TDPAQAREFVEATGIDSLAVAIGTAHGMYKG-EPKLDFDRLENIRQWV--NIPLVLHGASGLPTKDIQQTIKLGICKVNV 231 (284)
T ss_pred CCHHHHHHHHHHHCcCEEeeccCccccccCC-CCcCCHHHHHHHHHHh--CCCeEEecCCCCCHHHHHHHHHcCCeEEEe
Confidence 5788887766 57999999974 554321 1123678899999887 789888664333 46788899999999999
Q ss_pred chHHHHHhhc-------cCh------HHHHHHHHHHHHHHHHHHHHhCCC
Q 017718 306 GRPVVYSLAA-------EGE------KGVRRVLEMLREEFELAMALSGCR 342 (367)
Q Consensus 306 g~~~l~~l~~-------~G~------~~v~~~i~~l~~el~~~m~~~G~~ 342 (367)
+|.+..+... ..+ .-.....+.+++.++..|+.+|..
T Consensus 232 ~T~l~~a~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~v~~~i~~~gs~ 281 (284)
T PRK09195 232 ATELKIAFSQALKNYLTEHPEANDPRHYLQPAKSAMKDVVSKVIADCGCE 281 (284)
T ss_pred CcHHHHHHHHHHHHHHHhCcCcCCHHHHHHHHHHHHHHHHHHHHHHhCCC
Confidence 9977543210 010 113334456677777777777753
|
|
| >TIGR02313 HpaI-NOT-DapA 2,4-dihydroxyhept-2-ene-1,7-dioic acid aldolase | Back alignment and domain information |
|---|
Probab=95.72 E-value=0.079 Score=51.09 Aligned_cols=93 Identities=15% Similarity=0.233 Sum_probs=60.1
Q ss_pred HHHHHHcCCcEEEEcCCCCCCCC-CccchHHHHHHHHHHhcCCCcEEEecCCCCHHHHHH----HHHcCCCEEEechHHH
Q 017718 236 ARIAVQAGAAGIIVSNHGARQLD-YVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFK----ALALGASGIFIGRPVV 310 (367)
Q Consensus 236 a~~~~~~G~d~i~vs~~gg~~~~-~~~~~~~~l~~i~~~~~~~~~via~GGI~~~~dv~k----al~lGAd~V~ig~~~l 310 (367)
++.+.+.|+++|.+.|+.|-... +..-..+++..+++.+.+++||++.-|-.+-.|+++ +-.+|||+|++..|+.
T Consensus 27 v~~~~~~Gv~gi~v~GstGE~~~Ls~~Er~~l~~~~~~~~~g~~pvi~gv~~~~t~~ai~~a~~A~~~Gad~v~v~pP~y 106 (294)
T TIGR02313 27 IEFQIEGGSHAISVGGTSGEPGSLTLEERKQAIENAIDQIAGRIPFAPGTGALNHDETLELTKFAEEAGADAAMVIVPYY 106 (294)
T ss_pred HHHHHHcCCCEEEECccCcccccCCHHHHHHHHHHHHHHhCCCCcEEEECCcchHHHHHHHHHHHHHcCCCEEEEcCccC
Confidence 46677899999999665442111 111233455666666777899997656566666643 4457999999999997
Q ss_pred HHhhccChHHHHHHHHHHHHH
Q 017718 311 YSLAAEGEKGVRRVLEMLREE 331 (367)
Q Consensus 311 ~~l~~~G~~~v~~~i~~l~~e 331 (367)
+.. .++++.+++..+.+.
T Consensus 107 ~~~---~~~~l~~~f~~ia~a 124 (294)
T TIGR02313 107 NKP---NQEALYDHFAEVADA 124 (294)
T ss_pred CCC---CHHHHHHHHHHHHHh
Confidence 642 345555555555443
|
This model represents a subset of the DapA (dihydrodipicolinate synthase) family which has apparently evolved a separate function. The product of DapA, dihydrodipicolinate, results from the non-enzymatic cyclization and dehydration of 6-amino-2,4-dihydroxyhept-2-ene-1,7-dioic acid, which is different from the substrate of this reaction only in the presence of the amino group. In the absence of this amino group, and running the reaction in the opposite direction, the reaction corresponds to the HpaI aldolase component of the 4-hydroxyphenylacetic acid catabolism pathway (see TIGR02311). At present, this variant of DapA is found only in Oceanobacillus iheyensis HTE831 and Thermus thermophilus HB27. In both of these cases, one or more other DapA genes can be found and the one identified by this model is part of an operon for 4-hydroxyphenylacetic acid catabolism. |
| >cd04729 NanE N-acetylmannosamine-6-phosphate epimerase (NanE) converts N-acetylmannosamine-6-phosphate to N-acetylglucosamine-6-phosphate | Back alignment and domain information |
|---|
Probab=95.71 E-value=0.42 Score=43.82 Aligned_cols=86 Identities=15% Similarity=0.101 Sum_probs=55.1
Q ss_pred HHHhhcCCCEEE---Eec--------CCHHHHHHHHHcCCcEEEEcCCCCCCCCCccchHHHHHHHHHHhcCCCcEEEec
Q 017718 216 WLQTITKLPILV---KGV--------LTAEDARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDG 284 (367)
Q Consensus 216 ~l~~~~~~Pv~v---K~v--------~~~~~a~~~~~~G~d~i~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~~~via~G 284 (367)
.+++..++|++. |.. .+.++++.+.++|+|.|.+...-.+ ...+....+.+..+++.. +++++.
T Consensus 54 ~i~~~~~iPil~~~~~~~~~~~~~ig~~~~~~~~a~~aGad~I~~~~~~~~-~p~~~~~~~~i~~~~~~g--~~~iiv-- 128 (219)
T cd04729 54 AIRARVDLPIIGLIKRDYPDSEVYITPTIEEVDALAAAGADIIALDATDRP-RPDGETLAELIKRIHEEY--NCLLMA-- 128 (219)
T ss_pred HHHHhCCCCEEEEEecCCCCCCceeCCCHHHHHHHHHcCCCEEEEeCCCCC-CCCCcCHHHHHHHHHHHh--CCeEEE--
Confidence 555556788763 222 2346889999999998777431111 011123344555555432 567766
Q ss_pred CCCCHHHHHHHHHcCCCEEEec
Q 017718 285 GVRRGTDVFKALALGASGIFIG 306 (367)
Q Consensus 285 GI~~~~dv~kal~lGAd~V~ig 306 (367)
++.+.+++.++..+|+|.+.+.
T Consensus 129 ~v~t~~ea~~a~~~G~d~i~~~ 150 (219)
T cd04729 129 DISTLEEALNAAKLGFDIIGTT 150 (219)
T ss_pred ECCCHHHHHHHHHcCCCEEEcc
Confidence 6899999999999999998654
|
This reaction is part of the pathway that allows the usage of sialic acid as a carbohydrate source. Sialic acids are a family of related sugars that are found as a component of glycoproteins, gangliosides, and other sialoglycoconjugates. |
| >PRK03620 5-dehydro-4-deoxyglucarate dehydratase; Provisional | Back alignment and domain information |
|---|
Probab=95.69 E-value=0.073 Score=51.51 Aligned_cols=92 Identities=20% Similarity=0.310 Sum_probs=59.2
Q ss_pred HHHHHHcCCcEEEEcCCCCCCCCCcc-chHHHHHHHHHHhcCCCcEEEecCCCCHHHHHHHH----HcCCCEEEechHHH
Q 017718 236 ARIAVQAGAAGIIVSNHGARQLDYVP-ATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKAL----ALGASGIFIGRPVV 310 (367)
Q Consensus 236 a~~~~~~G~d~i~vs~~gg~~~~~~~-~~~~~l~~i~~~~~~~~~via~GGI~~~~dv~kal----~lGAd~V~ig~~~l 310 (367)
++.+.+.|+++|.+.|+.|-...-.. --.+.+..+++.+.+++|||+.-|- +-.++++.. .+|||+|++-.|++
T Consensus 34 i~~l~~~Gv~Gi~~~GstGE~~~Lt~eEr~~~~~~~~~~~~~~~pvi~gv~~-~t~~~i~~~~~a~~~Gadav~~~pP~y 112 (303)
T PRK03620 34 LEWLAPYGAAALFAAGGTGEFFSLTPDEYSQVVRAAVETTAGRVPVIAGAGG-GTAQAIEYAQAAERAGADGILLLPPYL 112 (303)
T ss_pred HHHHHHcCCCEEEECcCCcCcccCCHHHHHHHHHHHHHHhCCCCcEEEecCC-CHHHHHHHHHHHHHhCCCEEEECCCCC
Confidence 45678899999999665442211111 1234566666777778999986663 556665433 47999999999987
Q ss_pred HHhhccChHHHHHHHHHHHHH
Q 017718 311 YSLAAEGEKGVRRVLEMLREE 331 (367)
Q Consensus 311 ~~l~~~G~~~v~~~i~~l~~e 331 (367)
+.. .++++.+++..+.+.
T Consensus 113 ~~~---~~~~i~~~f~~va~~ 130 (303)
T PRK03620 113 TEA---PQEGLAAHVEAVCKS 130 (303)
T ss_pred CCC---CHHHHHHHHHHHHHh
Confidence 632 355665665555443
|
|
| >cd00452 KDPG_aldolase KDPG and KHG aldolase | Back alignment and domain information |
|---|
Probab=95.67 E-value=0.083 Score=47.49 Aligned_cols=76 Identities=29% Similarity=0.291 Sum_probs=55.2
Q ss_pred HHHhhcC-CCEEEEecCCHHHHHHHHHcCCcEEEEcCCCCCCCCCccchHHHHHHHHHHhcCCCcEEEecCCCCHHHHHH
Q 017718 216 WLQTITK-LPILVKGVLTAEDARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFK 294 (367)
Q Consensus 216 ~l~~~~~-~Pv~vK~v~~~~~a~~~~~~G~d~i~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~~~via~GGI~~~~dv~k 294 (367)
.+++..+ +++..-.+.+.+.+..+.++|+|+|... +. ..+.+ +.++.. .++++. |+.|.+++.+
T Consensus 48 ~l~~~~~~~~iGag~v~~~~~~~~a~~~Ga~~i~~p---~~-------~~~~~-~~~~~~--~~~~i~--gv~t~~e~~~ 112 (190)
T cd00452 48 ALRKEFPEALIGAGTVLTPEQADAAIAAGAQFIVSP---GL-------DPEVV-KAANRA--GIPLLP--GVATPTEIMQ 112 (190)
T ss_pred HHHHHCCCCEEEEEeCCCHHHHHHHHHcCCCEEEcC---CC-------CHHHH-HHHHHc--CCcEEC--CcCCHHHHHH
Confidence 6666664 5666666788999999999999999642 11 12222 333333 567765 8889999999
Q ss_pred HHHcCCCEEEec
Q 017718 295 ALALGASGIFIG 306 (367)
Q Consensus 295 al~lGAd~V~ig 306 (367)
++.+|||.+.+.
T Consensus 113 A~~~Gad~i~~~ 124 (190)
T cd00452 113 ALELGADIVKLF 124 (190)
T ss_pred HHHCCCCEEEEc
Confidence 999999999983
|
This family belongs to the class I adolases whose reaction mechanism involves Schiff base formation between a substrate carbonyl and lysine residue in the active site. 2-keto-3-deoxy-6-phosphogluconate (KDPG) aldolase, is best known for its role in the Entner-Doudoroff pathway of bacteria, where it catalyzes the reversible cleavage of KDPG to pyruvate and glyceraldehyde-3-phosphate. 2-keto-4-hydroxyglutarate (KHG) aldolase, which has enzymatic specificity toward glyoxylate, forming KHG in the presence of pyruvate, and is capable of regulating glyoxylate levels in the glyoxylate bypass, an alternate pathway when bacteria are grown on acetate carbon sources. |
| >KOG4201 consensus Anthranilate synthase component II [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=95.65 E-value=0.057 Score=49.20 Aligned_cols=81 Identities=17% Similarity=0.236 Sum_probs=61.4
Q ss_pred ecCCHHHHHHHHHcCCcEEEEcCCCCCCCCCccchHHHHHHHHHHhcCCCcEEEecCCCCHHHHHHHHHcCCCEEEechH
Q 017718 229 GVLTAEDARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFIGRP 308 (367)
Q Consensus 229 ~v~~~~~a~~~~~~G~d~i~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~~~via~GGI~~~~dv~kal~lGAd~V~ig~~ 308 (367)
.+.+.++.+++.+.|+.-|-|-|..=+++....++..-| .+..+.++-+++-+||.|++|+.++-..|..+|.+|-.
T Consensus 192 EVn~~eEm~raleiGakvvGvNNRnL~sFeVDlstTskL---~E~i~kDvilva~SGi~tpdDia~~q~~GV~avLVGEs 268 (289)
T KOG4201|consen 192 EVNDEEEMQRALEIGAKVVGVNNRNLHSFEVDLSTTSKL---LEGIPKDVILVALSGIFTPDDIAKYQKAGVKAVLVGES 268 (289)
T ss_pred eeccHHHHHHHHHhCcEEEeecCCccceeeechhhHHHH---HhhCccceEEEeccCCCCHHHHHHHHHcCceEEEecHH
Confidence 467888999999999998888764333333333333333 23345578889999999999999999999999999998
Q ss_pred HHHH
Q 017718 309 VVYS 312 (367)
Q Consensus 309 ~l~~ 312 (367)
++..
T Consensus 269 lmk~ 272 (289)
T KOG4201|consen 269 LMKQ 272 (289)
T ss_pred HHhc
Confidence 8863
|
|
| >PRK13396 3-deoxy-7-phosphoheptulonate synthase; Provisional | Back alignment and domain information |
|---|
Probab=95.63 E-value=0.27 Score=48.58 Aligned_cols=119 Identities=20% Similarity=0.341 Sum_probs=70.7
Q ss_pred hcCCCEEEEecC--CHHH----HHHHHHcCCcEEEEcCCCCCCCCC----ccchHHHHHHHHHHhcCCCcEEEec----C
Q 017718 220 ITKLPILVKGVL--TAED----ARIAVQAGAAGIIVSNHGARQLDY----VPATIMALEEVVKATQGRIPVFLDG----G 285 (367)
Q Consensus 220 ~~~~Pv~vK~v~--~~~~----a~~~~~~G~d~i~vs~~gg~~~~~----~~~~~~~l~~i~~~~~~~~~via~G----G 285 (367)
.+++||++|--+ +.++ ++.+.+.|-+-|++--.|=+++.+ -...+..++.+++.. .+|||+|- |
T Consensus 206 ~t~kPVllk~G~~~t~ee~~~A~e~i~~~Gn~~viL~erG~rtf~s~y~~~~~dl~ai~~lk~~~--~lPVi~DpsH~~G 283 (352)
T PRK13396 206 AQDKPVLLKRGMAATIDEWLMAAEYILAAGNPNVILCERGIRTFDRQYTRNTLDLSVIPVLRSLT--HLPIMIDPSHGTG 283 (352)
T ss_pred ccCCeEEEeCCCCCCHHHHHHHHHHHHHcCCCeEEEEecCCccCcCCCCCCCcCHHHHHHHHHhh--CCCEEECCcccCC
Confidence 368999999874 4555 566677888777776545444432 223566777776654 69999973 3
Q ss_pred CC--CHHHHHHHHHcCCCEEEechHHHHHhh-ccChHHH-HHHHHHHHHHHHHHHHHhC
Q 017718 286 VR--RGTDVFKALALGASGIFIGRPVVYSLA-AEGEKGV-RRVLEMLREEFELAMALSG 340 (367)
Q Consensus 286 I~--~~~dv~kal~lGAd~V~ig~~~l~~l~-~~G~~~v-~~~i~~l~~el~~~m~~~G 340 (367)
.+ ...-...|+++|||+++|=.-+--.-+ +.|...+ -+-++.|.++++..-..+|
T Consensus 284 ~sd~~~~~a~AAva~GAdGliIE~H~~pd~AlsD~~qsl~p~~~~~l~~~i~~i~~~~g 342 (352)
T PRK13396 284 KSEYVPSMAMAAIAAGTDSLMIEVHPNPAKALSDGPQSLTPDRFDRLMQELAVIGKTVG 342 (352)
T ss_pred cHHHHHHHHHHHHhhCCCeEEEEecCCcccCCChhhhcCCHHHHHHHHHHHHHHHHHhC
Confidence 32 233445677899999999874422111 1222111 1234455556665555555
|
|
| >cd00951 KDGDH 5-dehydro-4-deoxyglucarate dehydratase, also called 5-keto-4-deoxy-glucarate dehydratase (KDGDH), which is member of dihydrodipicolinate synthase (DHDPS) family that comprises several pyruvate-dependent class I aldolases | Back alignment and domain information |
|---|
Probab=95.61 E-value=0.083 Score=50.76 Aligned_cols=91 Identities=20% Similarity=0.318 Sum_probs=58.9
Q ss_pred HHHHHHcCCcEEEEcCCCCCCCCCccc-hHHHHHHHHHHhcCCCcEEEecCCCCHHHHHHH----HHcCCCEEEechHHH
Q 017718 236 ARIAVQAGAAGIIVSNHGARQLDYVPA-TIMALEEVVKATQGRIPVFLDGGVRRGTDVFKA----LALGASGIFIGRPVV 310 (367)
Q Consensus 236 a~~~~~~G~d~i~vs~~gg~~~~~~~~-~~~~l~~i~~~~~~~~~via~GGI~~~~dv~ka----l~lGAd~V~ig~~~l 310 (367)
++.+.+.|+++|.+.++.|-...-... -.+.+..+++.+.+++|||+.-|- +-.+.++. -.+|||++++-.|+.
T Consensus 27 ~~~l~~~Gv~gi~v~GstGE~~~Ls~eEr~~l~~~~~~~~~~~~pvi~gv~~-~t~~~i~~a~~a~~~Gad~v~~~pP~y 105 (289)
T cd00951 27 VEWLLSYGAAALFAAGGTGEFFSLTPDEYAQVVRAAVEETAGRVPVLAGAGY-GTATAIAYAQAAEKAGADGILLLPPYL 105 (289)
T ss_pred HHHHHHcCCCEEEECcCCcCcccCCHHHHHHHHHHHHHHhCCCCCEEEecCC-CHHHHHHHHHHHHHhCCCEEEECCCCC
Confidence 456788999999996654422111111 234555666666678999997665 66666643 347999999999987
Q ss_pred HHhhccChHHHHHHHHHHHH
Q 017718 311 YSLAAEGEKGVRRVLEMLRE 330 (367)
Q Consensus 311 ~~l~~~G~~~v~~~i~~l~~ 330 (367)
+.. .++++.++++.+.+
T Consensus 106 ~~~---~~~~i~~~f~~v~~ 122 (289)
T cd00951 106 TEA---PQEGLYAHVEAVCK 122 (289)
T ss_pred CCC---CHHHHHHHHHHHHh
Confidence 632 35555555555433
|
The enzyme is involved in glucarate metabolism, and its mechanism presumbly involves a Schiff-base intermediate similar to members of DHDPS family. While in the case of Pseudomonas sp. 5-dehydro-4-deoxy-D-glucarate is degraded by KDGDH to 2,5-dioxopentanoate, in certain species of Enterobacteriaceae it is degraded instead to pyruvate and glycerate. |
| >PRK06552 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional | Back alignment and domain information |
|---|
Probab=95.61 E-value=0.067 Score=49.21 Aligned_cols=75 Identities=27% Similarity=0.240 Sum_probs=55.0
Q ss_pred HHHhhcC----CCEEEEecCCHHHHHHHHHcCCcEEEEcCCCCCCCCCccchHHHHHHHHHHhcCCCcEEEecCCCCHHH
Q 017718 216 WLQTITK----LPILVKGVLTAEDARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTD 291 (367)
Q Consensus 216 ~l~~~~~----~Pv~vK~v~~~~~a~~~~~~G~d~i~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~~~via~GGI~~~~d 291 (367)
.+++..+ +.|.+..+.+.++++.+.++|+++|+--+ ...+++..+. .. ++|++- |+.|+.+
T Consensus 57 ~l~~~~~~~p~~~vGaGTV~~~~~~~~a~~aGA~FivsP~----------~~~~v~~~~~-~~--~i~~iP--G~~T~~E 121 (213)
T PRK06552 57 ELVELYKDDPEVLIGAGTVLDAVTARLAILAGAQFIVSPS----------FNRETAKICN-LY--QIPYLP--GCMTVTE 121 (213)
T ss_pred HHHHHcCCCCCeEEeeeeCCCHHHHHHHHHcCCCEEECCC----------CCHHHHHHHH-Hc--CCCEEC--CcCCHHH
Confidence 6666652 55677778999999999999999987311 1223333322 22 566665 8999999
Q ss_pred HHHHHHcCCCEEEe
Q 017718 292 VFKALALGASGIFI 305 (367)
Q Consensus 292 v~kal~lGAd~V~i 305 (367)
+..++.+|||.|.+
T Consensus 122 ~~~A~~~Gad~vkl 135 (213)
T PRK06552 122 IVTALEAGSEIVKL 135 (213)
T ss_pred HHHHHHcCCCEEEE
Confidence 99999999999998
|
|
| >PRK14057 epimerase; Provisional | Back alignment and domain information |
|---|
Probab=95.60 E-value=0.48 Score=44.72 Aligned_cols=77 Identities=10% Similarity=0.072 Sum_probs=50.2
Q ss_pred CCHHHHHHHHHcCCcEEEEc--CCCCCCCCCccchHHHHHHHHHHhcC---CCcEEEecCCCCHHHHHHHHHcCCCEEEe
Q 017718 231 LTAEDARIAVQAGAAGIIVS--NHGARQLDYVPATIMALEEVVKATQG---RIPVFLDGGVRRGTDVFKALALGASGIFI 305 (367)
Q Consensus 231 ~~~~~a~~~~~~G~d~i~vs--~~gg~~~~~~~~~~~~l~~i~~~~~~---~~~via~GGI~~~~dv~kal~lGAd~V~i 305 (367)
...+..+...+. +|.|.+- +-|......-+..++-+.++++.... ++.|-+||||.. +.+.++.++|||.+.+
T Consensus 143 Tp~e~i~~~l~~-vD~VLvMtV~PGfgGQ~Fi~~~l~KI~~lr~~~~~~~~~~~IeVDGGI~~-~ti~~l~~aGad~~V~ 220 (254)
T PRK14057 143 TPLDVIIPILSD-VEVIQLLAVNPGYGSKMRSSDLHERVAQLLCLLGDKREGKIIVIDGSLTQ-DQLPSLIAQGIDRVVS 220 (254)
T ss_pred CCHHHHHHHHHh-CCEEEEEEECCCCCchhccHHHHHHHHHHHHHHHhcCCCceEEEECCCCH-HHHHHHHHCCCCEEEE
Confidence 456777766654 7877763 22211122334455566665554322 577999999975 4688888999999999
Q ss_pred chHH
Q 017718 306 GRPV 309 (367)
Q Consensus 306 g~~~ 309 (367)
|+.+
T Consensus 221 GSal 224 (254)
T PRK14057 221 GSAL 224 (254)
T ss_pred ChHh
Confidence 9875
|
|
| >PF03437 BtpA: BtpA family; InterPro: IPR005137 Photosystem I (PSI) is a large protein complex embedded within the photosynthetic thylakoid membrane | Back alignment and domain information |
|---|
Probab=95.60 E-value=0.04 Score=51.98 Aligned_cols=70 Identities=27% Similarity=0.394 Sum_probs=53.6
Q ss_pred HHHHHH-HHcCCcEEEEcCCCCCCCCCccchHHHHHHHHHHhcCCCcEEEecCCCCHHHHHHHHHcCCCEEEechHHHH
Q 017718 234 EDARIA-VQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFIGRPVVY 311 (367)
Q Consensus 234 ~~a~~~-~~~G~d~i~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~~~via~GGI~~~~dv~kal~lGAd~V~ig~~~l~ 311 (367)
+.++.+ ...++|+|+|++.. .+.+++.+.|.++++.+ .+||++.+|+ |.+.+.+.|.. ||++.+||.|-.
T Consensus 162 ~~~~~a~~~~~aDaviVtG~~----TG~~~~~~~l~~vr~~~--~~PVlvGSGv-t~~Ni~~~l~~-ADG~IVGS~~K~ 232 (254)
T PF03437_consen 162 EAAKDAVERGGADAVIVTGKA----TGEPPDPEKLKRVREAV--PVPVLVGSGV-TPENIAEYLSY-ADGAIVGSYFKK 232 (254)
T ss_pred HHHHHHHHhcCCCEEEECCcc----cCCCCCHHHHHHHHhcC--CCCEEEecCC-CHHHHHHHHHh-CCEEEEeeeeee
Confidence 345554 67899999997632 23467888899998877 4999998887 56888888865 999999997643
|
It consists of 11 subunits, ~100 chlorophyll a molecules, 2 phylloquinones, and 3 Fe4S4-clusters. The three dimensional structure of the PSI complex has been resolved at 2.5 A [], which allows the precise localisation of each cofactor. PSI together with photosystem II (PSII) catalyses the light-induced steps in oxygenic photosynthesis - a process found in cyanobacteria, eukaryotic algae (e.g. red algae, green algae) and higher plants. To date, three thylakoid proteins involved in the stable accumulation of PSI have been identified: BtpA [], Ycf3 [, ], and Ycf4 (IPR003359 from INTERPRO) []. Because translation of the psaA and psaB mRNAs encoding the two reaction centre polypeptides, of PSI and PSII respectively, is not affected in mutant strains lacking functional ycf3 and ycf4, the products of these two genes appear to act at a post-translational step of PSI biosynthesis. These gene products are therefore involved either in the stabilisation or in the assembly of the PSI complex. However, their exact roles remain unknown. The BtpA protein appears to act at the level of PSI stabilisation []. It is an extrinsic membrane protein located on the cytoplasmic side of the thylakoid membrane [, ]. Homologs of BtpA are found in the crenarchaeota and euryarchaeota, where their function remains unknown. The Ycf4 protein is firmly associated with the thylakoid membrane, presumably through a transmembrane domain []. Ycf4 co-fractionates with a protein complex larger than PSI upon sucrose density gradient centrifugation of solubilised thylakoids []. The Ycf3 protein is loosely associated with the thylakoid membrane and can be released from the membrane with sodium carbonate. This suggests that Ycf3 is not part of a stable complex and that it probably interacts transiently with its partners []. Ycf3 contains a number of tetratrico peptide repeats (TPR, IPR001440 from INTERPRO); TPR is a structural motif present in a wide range of proteins, which mediates protein-protein interactions. |
| >TIGR02313 HpaI-NOT-DapA 2,4-dihydroxyhept-2-ene-1,7-dioic acid aldolase | Back alignment and domain information |
|---|
Probab=95.58 E-value=2.4 Score=40.87 Aligned_cols=183 Identities=16% Similarity=0.130 Sum_probs=102.9
Q ss_pred cceEeCcccchhccCChhhHHHHHHHHHcCCceee--c---CCCCCCHHHHH-------hhCC--CceEEEEeecCCHHH
Q 017718 72 MPIMIAPTAMQKMAHPEGEYATARAASAAGTIMTL--S---SWSTSSVEEVA-------STGP--GIRFFQLYVYKDRNV 137 (367)
Q Consensus 72 ~Pi~iAPm~~~~l~~~~~e~~~a~aa~~~G~~~~v--s---~~~~~~~e~i~-------~~~~--~~~~~QLy~~~d~~~ 137 (367)
.|.++.|+.-.+-.+.++-..+.+-..+.|+...+ | ++.+.+.+|.. +... -+.+.+.. ..+.+.
T Consensus 5 ~~a~~TPf~~dg~iD~~~l~~lv~~~~~~Gv~gi~v~GstGE~~~Ls~~Er~~l~~~~~~~~~g~~pvi~gv~-~~~t~~ 83 (294)
T TIGR02313 5 IAPLITPFKRNGDIDEEALRELIEFQIEGGSHAISVGGTSGEPGSLTLEERKQAIENAIDQIAGRIPFAPGTG-ALNHDE 83 (294)
T ss_pred eeeeeCCcCCCCCcCHHHHHHHHHHHHHcCCCEEEECccCcccccCCHHHHHHHHHHHHHHhCCCCcEEEECC-cchHHH
Confidence 46678887544434444444677777778875432 3 34556766532 1122 34556654 345556
Q ss_pred HHHHHHHHHHcCCcEEEEecCCCCCCchhHHhhhhcCCCCccccccccccccCccccccchhhHHHhhhccCccccHHHH
Q 017718 138 VAQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLTLKNFQGLDLGKMDEANDSGLAAYVAGQIDRSLSWKWL 217 (367)
Q Consensus 138 ~~~~l~ra~~~G~~ai~itvd~p~~g~r~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~l 217 (367)
..++++.|++.|++++.+.. |.. ...+ ..++.+ -++.+
T Consensus 84 ai~~a~~A~~~Gad~v~v~p--P~y-----------------~~~~-------------~~~l~~----------~f~~i 121 (294)
T TIGR02313 84 TLELTKFAEEAGADAAMVIV--PYY-----------------NKPN-------------QEALYD----------HFAEV 121 (294)
T ss_pred HHHHHHHHHHcCCCEEEEcC--ccC-----------------CCCC-------------HHHHHH----------HHHHH
Confidence 67788999999999998722 221 1000 001111 12367
Q ss_pred Hhhc-CCCEEEEec-------CCHHHHHHHHH-c-CCcEEEEcCCCCCCCCCccchHHHHHHHHHHhcCCCcEEEecCCC
Q 017718 218 QTIT-KLPILVKGV-------LTAEDARIAVQ-A-GAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVR 287 (367)
Q Consensus 218 ~~~~-~~Pv~vK~v-------~~~~~a~~~~~-~-G~d~i~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~~~via~GGI~ 287 (367)
.+.+ ++||++=.. .+++...++.+ . .+-+|.-+. ..+..+.++.+..+.++.|+. |
T Consensus 122 a~a~~~lpv~iYn~P~~tg~~l~~~~l~~L~~~~pnv~giK~ss----------~d~~~~~~~~~~~~~~~~v~~-G--- 187 (294)
T TIGR02313 122 ADAVPDFPIIIYNIPGRAAQEIAPKTMARLRKDCPNIVGAKESN----------KDFEHLNHLFLEAGRDFLLFC-G--- 187 (294)
T ss_pred HHhccCCCEEEEeCchhcCcCCCHHHHHHHHhhCCCEEEEEeCC----------CCHHHHHHHHHhcCCCeEEEE-c---
Confidence 7778 799988764 45677777764 3 233333221 133444455444444554443 4
Q ss_pred CHHHHHHHHHcCCCEEEechHHHH
Q 017718 288 RGTDVFKALALGASGIFIGRPVVY 311 (367)
Q Consensus 288 ~~~dv~kal~lGAd~V~ig~~~l~ 311 (367)
.....+.++.+||++++.|..-++
T Consensus 188 ~d~~~~~~l~~Ga~G~is~~~n~~ 211 (294)
T TIGR02313 188 IELLCLPMLAIGAAGSIAATANVE 211 (294)
T ss_pred chHHHHHHHHCCCCEEEecHHhhC
Confidence 235566788999999998885443
|
This model represents a subset of the DapA (dihydrodipicolinate synthase) family which has apparently evolved a separate function. The product of DapA, dihydrodipicolinate, results from the non-enzymatic cyclization and dehydration of 6-amino-2,4-dihydroxyhept-2-ene-1,7-dioic acid, which is different from the substrate of this reaction only in the presence of the amino group. In the absence of this amino group, and running the reaction in the opposite direction, the reaction corresponds to the HpaI aldolase component of the 4-hydroxyphenylacetic acid catabolism pathway (see TIGR02311). At present, this variant of DapA is found only in Oceanobacillus iheyensis HTE831 and Thermus thermophilus HB27. In both of these cases, one or more other DapA genes can be found and the one identified by this model is part of an operon for 4-hydroxyphenylacetic acid catabolism. |
| >TIGR00734 hisAF_rel hisA/hisF family protein | Back alignment and domain information |
|---|
Probab=95.54 E-value=0.067 Score=49.43 Aligned_cols=72 Identities=18% Similarity=0.175 Sum_probs=55.9
Q ss_pred HHHHHHHHHcCCcEEEEcCCCCCCCCCccchHHHHHHHHHHhcCCCcEEEecCCCCHHHHHHHHH--cCCCEEEechHHH
Q 017718 233 AEDARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALA--LGASGIFIGRPVV 310 (367)
Q Consensus 233 ~~~a~~~~~~G~d~i~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~~~via~GGI~~~~dv~kal~--lGAd~V~ig~~~l 310 (367)
.+.|+...+.|+|.+.+-.=-+. .+.+...+.+.++.+. +|+...|||++.+|+.+++. .||+-|.+||..+
T Consensus 39 ~~~a~~~~~~g~~~l~ivDLd~~--~~~~~n~~~i~~i~~~----~~v~vgGGirs~e~~~~~~~~l~~a~rvvigT~a~ 112 (221)
T TIGR00734 39 DDAAKVIEEIGARFIYIADLDRI--VGLGDNFSLLSKLSKR----VELIADCGVRSPEDLETLPFTLEFASRVVVATETL 112 (221)
T ss_pred HHHHHHHHHcCCCEEEEEEcccc--cCCcchHHHHHHHHhh----CcEEEcCccCCHHHHHHHHhhhccceEEeecChhh
Confidence 46688889999999988542221 1445678888888764 58999999999999999876 2799999999653
|
This alignment models a family of proteins found so far in three archaeal species: Methanobacterium thermoautotrophicum, Methanococcus jannaschii, and Archaeoglobus fulgidus. This protein is homologous to phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase (HisA) and, with lower similarity, to the cyclase HisF, both of which are enzymes of histidine biosynthesis. Each species with this protein also encodes HisA. The function of this protein is unknown. |
| >cd00952 CHBPH_aldolase Trans-o-hydroxybenzylidenepyruvate hydratase-aldolase (HBPHA) and trans-2'-carboxybenzalpyruvate hydratase-aldolase (CBPHA) | Back alignment and domain information |
|---|
Probab=95.48 E-value=0.096 Score=50.89 Aligned_cols=92 Identities=23% Similarity=0.336 Sum_probs=58.4
Q ss_pred HHHHHHcCCcEEEEcCCCCCCCCCcc-chHHHHHHHHHHhcCCCcEEEecCCCCHHHHHHHH----HcCCCEEEechHHH
Q 017718 236 ARIAVQAGAAGIIVSNHGARQLDYVP-ATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKAL----ALGASGIFIGRPVV 310 (367)
Q Consensus 236 a~~~~~~G~d~i~vs~~gg~~~~~~~-~~~~~l~~i~~~~~~~~~via~GGI~~~~dv~kal----~lGAd~V~ig~~~l 310 (367)
++.+.+.|+++|.+.|+.|-...-.. -..+.+..+++.+++++|||+.-|=.+..++++.. .+|||+|++-.|+.
T Consensus 35 v~~li~~Gv~Gi~v~GstGE~~~Lt~eEr~~v~~~~~~~~~grvpvi~Gv~~~~t~~ai~~a~~A~~~Gad~vlv~~P~y 114 (309)
T cd00952 35 VERLIAAGVDGILTMGTFGECATLTWEEKQAFVATVVETVAGRVPVFVGATTLNTRDTIARTRALLDLGADGTMLGRPMW 114 (309)
T ss_pred HHHHHHcCCCEEEECcccccchhCCHHHHHHHHHHHHHHhCCCCCEEEEeccCCHHHHHHHHHHHHHhCCCEEEECCCcC
Confidence 45678899999999765442111111 12345555666677789999865555556666433 37999999999987
Q ss_pred HHhhccChHHHHHHHHHHHH
Q 017718 311 YSLAAEGEKGVRRVLEMLRE 330 (367)
Q Consensus 311 ~~l~~~G~~~v~~~i~~l~~ 330 (367)
+.. .++++.++++.+.+
T Consensus 115 ~~~---~~~~l~~yf~~va~ 131 (309)
T cd00952 115 LPL---DVDTAVQFYRDVAE 131 (309)
T ss_pred CCC---CHHHHHHHHHHHHH
Confidence 642 34555555544433
|
HBPHA catalyzes HBP to salicyaldehyde and pyruvate. This reaction is part of the degradative pathways for naphthalene and naphthalenesulfonates by bacteria. CBPHA is homologous to HBPHA and catalyzes the cleavage of CBP to 2-carboxylbenzaldehyde and pyruvate during the degradation of phenanthrene. They are member of the DHDPS family of Schiff-base-dependent class I aldolases. |
| >cd00408 DHDPS-like Dihydrodipicolinate synthase family | Back alignment and domain information |
|---|
Probab=95.47 E-value=0.11 Score=49.34 Aligned_cols=92 Identities=21% Similarity=0.386 Sum_probs=59.4
Q ss_pred HHHHHHcCCcEEEEcCCCCCCCCCcc-chHHHHHHHHHHhcCCCcEEEecCCCCHHHHHH----HHHcCCCEEEechHHH
Q 017718 236 ARIAVQAGAAGIIVSNHGARQLDYVP-ATIMALEEVVKATQGRIPVFLDGGVRRGTDVFK----ALALGASGIFIGRPVV 310 (367)
Q Consensus 236 a~~~~~~G~d~i~vs~~gg~~~~~~~-~~~~~l~~i~~~~~~~~~via~GGI~~~~dv~k----al~lGAd~V~ig~~~l 310 (367)
++.+.+.|+++|.+.++.|-...-.. -..+.+..+++.+++++||++.-|-.+-.++++ +-.+|||+|++..|+.
T Consensus 24 i~~l~~~Gv~gi~~~GstGE~~~ls~~Er~~l~~~~~~~~~~~~~vi~gv~~~~~~~~i~~a~~a~~~Gad~v~v~pP~y 103 (281)
T cd00408 24 VEFLIEAGVDGLVVLGTTGEAPTLTDEERKEVIEAVVEAVAGRVPVIAGVGANSTREAIELARHAEEAGADGVLVVPPYY 103 (281)
T ss_pred HHHHHHcCCCEEEECCCCcccccCCHHHHHHHHHHHHHHhCCCCeEEEecCCccHHHHHHHHHHHHHcCCCEEEECCCcC
Confidence 46677889999999766553222121 234456666676667899998666555555554 3347999999999987
Q ss_pred HHhhccChHHHHHHHHHHHH
Q 017718 311 YSLAAEGEKGVRRVLEMLRE 330 (367)
Q Consensus 311 ~~l~~~G~~~v~~~i~~l~~ 330 (367)
+. ..++++.+++..+.+
T Consensus 104 ~~---~~~~~~~~~~~~ia~ 120 (281)
T cd00408 104 NK---PSQEGIVAHFKAVAD 120 (281)
T ss_pred CC---CCHHHHHHHHHHHHh
Confidence 74 245555555555433
|
A member of the class I aldolases, which use an active-site lysine which stablilzes a reaction intermediate via Schiff base formation, and have TIM beta/alpha barrel fold. The dihydrodipicolinate synthase family comprises several pyruvate-dependent class I aldolases that use the same catalytic step to catalyze different reactions in different pathways and includes such proteins as N-acetylneuraminate lyase, MosA protein, 5-keto-4-deoxy-glucarate dehydratase, trans-o-hydroxybenzylidenepyruvate hydratase-aldolase, trans-2'-carboxybenzalpyruvate hydratase-aldolase, and 2-keto-3-deoxy- gluconate aldolase. The family is also referred to as the N-acetylneuraminate lyase (NAL) family. |
| >PRK07107 inosine 5-monophosphate dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=95.47 E-value=0.063 Score=55.64 Aligned_cols=68 Identities=16% Similarity=0.102 Sum_probs=51.0
Q ss_pred HHHHHHHHcCCcEEEEcCCCCCCCCCccchHHHHHHHHHHhcCCCcEEEecCCCCHHHHHHHHHcCCCEEEec
Q 017718 234 EDARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFIG 306 (367)
Q Consensus 234 ~~a~~~~~~G~d~i~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~~~via~GGI~~~~dv~kal~lGAd~V~ig 306 (367)
+-++.+.++|+|.|+|.+.-|+ .....+.+.++++..+++++ +..|-|.+.+++..++.+|||++-+|
T Consensus 245 ~ra~~Lv~aGvd~i~vd~a~g~----~~~~~~~i~~ir~~~~~~~~-V~aGnV~t~e~a~~li~aGAd~I~vg 312 (502)
T PRK07107 245 ERVPALVEAGADVLCIDSSEGY----SEWQKRTLDWIREKYGDSVK-VGAGNVVDREGFRYLAEAGADFVKVG 312 (502)
T ss_pred HHHHHHHHhCCCeEeecCcccc----cHHHHHHHHHHHHhCCCCce-EEeccccCHHHHHHHHHcCCCEEEEC
Confidence 5578899999999999643321 11236778888776643344 44599999999999999999999884
|
|
| >PF00478 IMPDH: IMP dehydrogenase / GMP reductase domain; InterPro: IPR001093 Synonym(s): Inosine-5'-monophosphate dehydrogenase, Inosinic acid dehydrogenase; Synonym(s): Guanosine 5'-monophosphate oxidoreductase This entry contains two related enzymes IMP dehydrogenase and GMP reducatase | Back alignment and domain information |
|---|
Probab=95.45 E-value=0.059 Score=53.17 Aligned_cols=68 Identities=22% Similarity=0.308 Sum_probs=50.6
Q ss_pred HHHHHHHHHcCCcEEEEcCCCCCCCCCccchHHHHHHHHHHhcCCCcEEEecCCCCHHHHHHHHHcCCCEEEec
Q 017718 233 AEDARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFIG 306 (367)
Q Consensus 233 ~~~a~~~~~~G~d~i~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~~~via~GGI~~~~dv~kal~lGAd~V~ig 306 (367)
.+-+..+.++|+|.|++...-|+ .....+.+.++++..+ ++|||+ |.|-|++-+...+..|||+|-+|
T Consensus 110 ~er~~~L~~agvD~ivID~a~g~----s~~~~~~ik~ik~~~~-~~~via-GNV~T~e~a~~L~~aGad~vkVG 177 (352)
T PF00478_consen 110 FERAEALVEAGVDVIVIDSAHGH----SEHVIDMIKKIKKKFP-DVPVIA-GNVVTYEGAKDLIDAGADAVKVG 177 (352)
T ss_dssp HHHHHHHHHTT-SEEEEE-SSTT----SHHHHHHHHHHHHHST-TSEEEE-EEE-SHHHHHHHHHTT-SEEEES
T ss_pred HHHHHHHHHcCCCEEEccccCcc----HHHHHHHHHHHHHhCC-CceEEe-cccCCHHHHHHHHHcCCCEEEEe
Confidence 46688899999999999753232 1235567888887764 788886 88999999999999999999888
|
These enzymes adopt a TIM barrel structure. IMP dehydrogenase (1.1.1.205 from EC) (IMPDH) catalyzes the rate-limiting reaction of de novo GTP biosynthesis, the NAD-dependent reduction of IMP into XMP []. |
| >cd00408 DHDPS-like Dihydrodipicolinate synthase family | Back alignment and domain information |
|---|
Probab=95.45 E-value=2.4 Score=40.17 Aligned_cols=181 Identities=19% Similarity=0.218 Sum_probs=104.8
Q ss_pred ceEeCcccchhccCChhhHHHHHHHHHcCCceee--c---CCCCCCHHHHH-------hhCC--CceEEEEeecCCHHHH
Q 017718 73 PIMIAPTAMQKMAHPEGEYATARAASAAGTIMTL--S---SWSTSSVEEVA-------STGP--GIRFFQLYVYKDRNVV 138 (367)
Q Consensus 73 Pi~iAPm~~~~l~~~~~e~~~a~aa~~~G~~~~v--s---~~~~~~~e~i~-------~~~~--~~~~~QLy~~~d~~~~ 138 (367)
|.++.|+.-.+-.+.++-..+.+-+.+.|+..++ + ++.+.+.+|-. +... -+.++++- ..+.+..
T Consensus 3 ~a~~TPf~~dg~iD~~~~~~~i~~l~~~Gv~gi~~~GstGE~~~ls~~Er~~l~~~~~~~~~~~~~vi~gv~-~~~~~~~ 81 (281)
T cd00408 3 PALVTPFTADGEVDLDALRRLVEFLIEAGVDGLVVLGTTGEAPTLTDEERKEVIEAVVEAVAGRVPVIAGVG-ANSTREA 81 (281)
T ss_pred CCeeCCcCCCCCcCHHHHHHHHHHHHHcCCCEEEECCCCcccccCCHHHHHHHHHHHHHHhCCCCeEEEecC-CccHHHH
Confidence 5567777544444555556788888888876543 2 33445665522 2222 35566654 3355567
Q ss_pred HHHHHHHHHcCCcEEEEecCCCCCCchhHHhhhhcCCCCccccccccccccCccccccchhhHHHhhhccCccccHHHHH
Q 017718 139 AQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLTLKNFQGLDLGKMDEANDSGLAAYVAGQIDRSLSWKWLQ 218 (367)
Q Consensus 139 ~~~l~ra~~~G~~ai~itvd~p~~g~r~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~l~ 218 (367)
.++++.++++|++++.+.- |.. ...+ .....+ -++.+.
T Consensus 82 i~~a~~a~~~Gad~v~v~p--P~y-----------------~~~~-------------~~~~~~----------~~~~ia 119 (281)
T cd00408 82 IELARHAEEAGADGVLVVP--PYY-----------------NKPS-------------QEGIVA----------HFKAVA 119 (281)
T ss_pred HHHHHHHHHcCCCEEEECC--CcC-----------------CCCC-------------HHHHHH----------HHHHHH
Confidence 7888999999999998722 211 0000 000111 123566
Q ss_pred hhcCCCEEEEec-------CCHHHHHHHHHcC-CcEEEEcCCCCCCCCCccchHHHHHHHHHHhcCCCcEEEecCCCCHH
Q 017718 219 TITKLPILVKGV-------LTAEDARIAVQAG-AAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGT 290 (367)
Q Consensus 219 ~~~~~Pv~vK~v-------~~~~~a~~~~~~G-~d~i~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~~~via~GGI~~~~ 290 (367)
+.+++|+++-.. .+++..+++.+.. +-+|.- +. .....+.++.+..++++.|+. |. ..
T Consensus 120 ~~~~~pi~iYn~P~~tg~~l~~~~~~~L~~~~~v~giK~---------s~-~d~~~~~~~~~~~~~~~~v~~-G~---d~ 185 (281)
T cd00408 120 DASDLPVILYNIPGRTGVDLSPETIARLAEHPNIVGIKD---------SS-GDLDRLTRLIALLGPDFAVLS-GD---DD 185 (281)
T ss_pred hcCCCCEEEEECccccCCCCCHHHHHHHhcCCCEEEEEe---------CC-CCHHHHHHHHHhcCCCeEEEE-cc---hH
Confidence 667899988654 5678777777522 222222 11 344445556555544555553 42 56
Q ss_pred HHHHHHHcCCCEEEechHHH
Q 017718 291 DVFKALALGASGIFIGRPVV 310 (367)
Q Consensus 291 dv~kal~lGAd~V~ig~~~l 310 (367)
.+...+.+|+++++.|...+
T Consensus 186 ~~~~~l~~G~~G~i~~~~n~ 205 (281)
T cd00408 186 LLLPALALGADGAISGAANV 205 (281)
T ss_pred HHHHHHHcCCCEEEehHHhh
Confidence 78888999999999887543
|
A member of the class I aldolases, which use an active-site lysine which stablilzes a reaction intermediate via Schiff base formation, and have TIM beta/alpha barrel fold. The dihydrodipicolinate synthase family comprises several pyruvate-dependent class I aldolases that use the same catalytic step to catalyze different reactions in different pathways and includes such proteins as N-acetylneuraminate lyase, MosA protein, 5-keto-4-deoxy-glucarate dehydratase, trans-o-hydroxybenzylidenepyruvate hydratase-aldolase, trans-2'-carboxybenzalpyruvate hydratase-aldolase, and 2-keto-3-deoxy- gluconate aldolase. The family is also referred to as the N-acetylneuraminate lyase (NAL) family. |
| >TIGR01163 rpe ribulose-phosphate 3-epimerase | Back alignment and domain information |
|---|
Probab=95.42 E-value=0.59 Score=42.12 Aligned_cols=124 Identities=17% Similarity=0.079 Sum_probs=76.6
Q ss_pred cCCHHHHHHHHHHHHHcCCcEEEEe-cCCCCCCchhHHhhhhcCCCCccccccccccccCccccccchhhHHHhhhccCc
Q 017718 132 YKDRNVVAQLVRRAERAGFKAIALT-VDTPRLGRREADIKNRFTLPPFLTLKNFQGLDLGKMDEANDSGLAAYVAGQIDR 210 (367)
Q Consensus 132 ~~d~~~~~~~l~ra~~~G~~ai~it-vd~p~~g~r~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~ 210 (367)
..|.+.+.+.++.+.+.|++.|-+. +|.+.. | |+ ..
T Consensus 7 ~~~~~~~~~~~~~~~~~g~d~i~~~~~Dg~~~-------------~------~~------------------------~~ 43 (210)
T TIGR01163 7 SADFARLGEEVKAVEEAGADWIHVDVMDGHFV-------------P------NL------------------------TF 43 (210)
T ss_pred cCCHHHHHHHHHHHHHcCCCEEEEcCCCCCCC-------------C------Cc------------------------cc
Confidence 4577888899999999999998775 444431 1 00 00
Q ss_pred ccc-HHHHHhhcCCCEE--EEecCCHHHHHHHHHcCCcEEEEcCCCCCCCCCccchHHHHHHHHHHhcCCCcEEEecCCC
Q 017718 211 SLS-WKWLQTITKLPIL--VKGVLTAEDARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVR 287 (367)
Q Consensus 211 ~~~-~~~l~~~~~~Pv~--vK~v~~~~~a~~~~~~G~d~i~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~~~via~GGI~ 287 (367)
.+. .+++++..+.|+. ++.....+.++.+.++|+|+|++ |++.. ......++.+++ . .+.++..-...
T Consensus 44 ~~~~v~~i~~~~~~~v~v~lm~~~~~~~~~~~~~~gadgv~v--h~~~~----~~~~~~~~~~~~-~--g~~~~~~~~~~ 114 (210)
T TIGR01163 44 GPPVLEALRKYTDLPIDVHLMVENPDRYIEDFAEAGADIITV--HPEAS----EHIHRLLQLIKD-L--GAKAGIVLNPA 114 (210)
T ss_pred CHHHHHHHHhcCCCcEEEEeeeCCHHHHHHHHHHcCCCEEEE--ccCCc----hhHHHHHHHHHH-c--CCcEEEEECCC
Confidence 011 1266655566752 44444456688889999999999 55421 122334444332 3 33333333466
Q ss_pred CHHHHHHHHHcCCCEEEech
Q 017718 288 RGTDVFKALALGASGIFIGR 307 (367)
Q Consensus 288 ~~~dv~kal~lGAd~V~ig~ 307 (367)
+..+.++.+..++|.+.+++
T Consensus 115 t~~e~~~~~~~~~d~i~~~~ 134 (210)
T TIGR01163 115 TPLEFLEYVLPDVDLVLLMS 134 (210)
T ss_pred CCHHHHHHHHhhCCEEEEEE
Confidence 77888888888999998865
|
This family consists of Ribulose-phosphate 3-epimerase, also known as pentose-5-phosphate 3-epimerase (PPE). PPE converts D-ribulose 5-phosphate into D-xylulose 5-phosphate in Calvin's reductive pentose phosphate cycle. It has been found in a wide range of bacteria, archebacteria, fungi and plants. |
| >PRK07807 inosine 5-monophosphate dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=95.37 E-value=0.074 Score=54.80 Aligned_cols=247 Identities=17% Similarity=0.222 Sum_probs=127.8
Q ss_pred ccccceeeccccC-CC-CCCccceeEcCeeeccceEeCcccchhccCChhhHHHHHHHHHcCCceeecCCCCCCHHHHHh
Q 017718 42 AFSRILFRPRILI-DV-SKIDMNTTVLGFKISMPIMIAPTAMQKMAHPEGEYATARAASAAGTIMTLSSWSTSSVEEVAS 119 (367)
Q Consensus 42 ~~~~i~l~pr~l~-~~-~~vd~st~i~g~~l~~Pi~iAPm~~~~l~~~~~e~~~a~aa~~~G~~~~vs~~~~~~~e~i~~ 119 (367)
.||++.|+|.... .. +++|++|+ .+..++.||+-|||-..+ +..++.+.++.|-..++.. +.+.++..+
T Consensus 14 tfddvll~p~~~~~~~~~~v~~~t~-~~~~l~~Pi~sa~Mdtvt------~~~MAiaLAr~GGiGvih~--nl~~~~q~~ 84 (479)
T PRK07807 14 TYDDVFLVPSRSDVGSRFDVDLSTA-DGTGTTIPLVVANMTAVA------GRRMAETVARRGGLVVLPQ--DIPIDVVAE 84 (479)
T ss_pred CccceEecccccCccCCCceecccC-CCCccccceeecCCcchh------HHHHHHHHHHCCCceEeeC--CCCHHHHHH
Confidence 5999999997663 34 48899997 488999999999996654 7789999999996666642 334443322
Q ss_pred h---CC-CceEE-EEeecCCHHHHHHHHHHHHHcCCcEEEEecCC--CCCCchhHHhhhhcCCCCccccccccccccCcc
Q 017718 120 T---GP-GIRFF-QLYVYKDRNVVAQLVRRAERAGFKAIALTVDT--PRLGRREADIKNRFTLPPFLTLKNFQGLDLGKM 192 (367)
Q Consensus 120 ~---~~-~~~~~-QLy~~~d~~~~~~~l~ra~~~G~~ai~itvd~--p~~g~r~~~~~~~~~~p~~~~~~~~~~~~~~~~ 192 (367)
. .. ...+. ....-....-..+++++..+.++..+.|+-+. ++.---.+|++.. +.......+........
T Consensus 85 ~l~~VKv~~iMi~~pvtv~~d~tv~eA~~~m~~~~~s~l~VVD~~gklvGIVT~rDL~~~---~~~~~V~diMt~~~itV 161 (479)
T PRK07807 85 VVAWVKSRDLVFDTPVTLSPDDTVGDALALLPKRAHGAVVVVDEEGRPVGVVTEADCAGV---DRFTQVRDVMSTDLVTL 161 (479)
T ss_pred HHhhcccccccccCCeEECCCCCHHHHHHHHHhcCCceEEEECCCCeEEEEEeHHHHhcC---ccCCCHHHhccCCceEE
Confidence 1 11 10110 00001112234456666666777666653221 1100112333210 00000000000000000
Q ss_pred cc-ccchhhHHHhhhc-------c--Ccc----ccHHHHHhhcCC-CEE-EEe---------c--CCHHHHHHHHHcCCc
Q 017718 193 DE-ANDSGLAAYVAGQ-------I--DRS----LSWKWLQTITKL-PIL-VKG---------V--LTAEDARIAVQAGAA 245 (367)
Q Consensus 193 ~~-~~~~~~~~~~~~~-------~--d~~----~~~~~l~~~~~~-Pv~-vK~---------v--~~~~~a~~~~~~G~d 245 (367)
.. .......+.+... . +.. +++..+.+.... |.. .++ + ...+.++.+.++|+|
T Consensus 162 ~~d~sL~eAl~lM~~~~i~~LPVVD~~g~lvGIIT~~DIl~~~~~~~~~~~~g~l~V~aav~~~~~~~~~a~~Lv~aGvd 241 (479)
T PRK07807 162 PAGTDPREAFDLLEAARVKLAPVVDADGRLVGVLTRTGALRATIYTPAVDAAGRLRVAAAVGINGDVAAKARALLEAGVD 241 (479)
T ss_pred CCCCcHHHHHHHHHhcCCCEEEEEcCCCeEEEEEEHHHHHHHhhCCchhhhhhccchHhhhccChhHHHHHHHHHHhCCC
Confidence 00 0000000000000 0 000 122211111111 110 001 1 113558889999999
Q ss_pred EEEEcCCCCCCCCCccchHHHHHHHHHHhcCCCcEEEecCCCCHHHHHHHHHcCCCEEEec
Q 017718 246 GIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFIG 306 (367)
Q Consensus 246 ~i~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~~~via~GGI~~~~dv~kal~lGAd~V~ig 306 (367)
.|++..+.|+ +....+.+++|++..+ +++||+ |.|.|.+.+..++.+|||+|-+|
T Consensus 242 ~i~~D~a~~~----~~~~~~~i~~ik~~~p-~~~v~a-gnv~t~~~a~~l~~aGad~v~vg 296 (479)
T PRK07807 242 VLVVDTAHGH----QEKMLEALRAVRALDP-GVPIVA-GNVVTAEGTRDLVEAGADIVKVG 296 (479)
T ss_pred EEEEeccCCc----cHHHHHHHHHHHHHCC-CCeEEe-eccCCHHHHHHHHHcCCCEEEEC
Confidence 9999754442 4567788899988664 566666 89999999999999999998744
|
|
| >TIGR01306 GMP_reduct_2 guanosine monophosphate reductase, bacterial | Back alignment and domain information |
|---|
Probab=95.32 E-value=0.17 Score=49.41 Aligned_cols=85 Identities=12% Similarity=0.080 Sum_probs=59.8
Q ss_pred HHHhhc--CCCEEEEecCCHH---HHHHHHHcC--CcEEEEcCCCCCCCCCccchHHHHHHHHHHhcCCCcEEEecCCCC
Q 017718 216 WLQTIT--KLPILVKGVLTAE---DARIAVQAG--AAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRR 288 (367)
Q Consensus 216 ~l~~~~--~~Pv~vK~v~~~~---~a~~~~~~G--~d~i~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~~~via~GGI~~ 288 (367)
++++.. .+++.+-...+.+ -+..+.++| +|.|++.-.-|+ ....++.+.++++.. ..|.+..|.|.+
T Consensus 74 fvrk~k~~~L~v~~SvG~t~e~~~r~~~lv~a~~~~d~i~~D~ahg~----s~~~~~~i~~i~~~~--p~~~vi~GnV~t 147 (321)
T TIGR01306 74 FIKDMQERGLFASISVGVKACEYEFVTQLAEEALTPEYITIDIAHGH----SNSVINMIKHIKTHL--PDSFVIAGNVGT 147 (321)
T ss_pred HHHhccccccEEEEEcCCCHHHHHHHHHHHhcCCCCCEEEEeCccCc----hHHHHHHHHHHHHhC--CCCEEEEecCCC
Confidence 455443 2334333334444 367788989 799998653222 134567788888766 568888899999
Q ss_pred HHHHHHHHHcCCCEEEec
Q 017718 289 GTDVFKALALGASGIFIG 306 (367)
Q Consensus 289 ~~dv~kal~lGAd~V~ig 306 (367)
.+++..++.+|||+|-+|
T Consensus 148 ~e~a~~l~~aGad~I~V~ 165 (321)
T TIGR01306 148 PEAVRELENAGADATKVG 165 (321)
T ss_pred HHHHHHHHHcCcCEEEEC
Confidence 999999999999999877
|
A deep split separates two families of GMP reductase. The other (TIGR01305) is found in eukaryotic and some proteobacterial lineages, including E. coli, while this family is found in a variety of bacterial lineages. |
| >PF00834 Ribul_P_3_epim: Ribulose-phosphate 3 epimerase family; InterPro: IPR000056 Ribulose-phosphate 3-epimerase (5 | Back alignment and domain information |
|---|
Probab=95.30 E-value=0.14 Score=46.59 Aligned_cols=47 Identities=17% Similarity=0.308 Sum_probs=33.1
Q ss_pred hHHHHHHHHHHh---cCCCcEEEecCCCCHHHHHHHHHcCCCEEEechHHH
Q 017718 263 TIMALEEVVKAT---QGRIPVFLDGGVRRGTDVFKALALGASGIFIGRPVV 310 (367)
Q Consensus 263 ~~~~l~~i~~~~---~~~~~via~GGI~~~~dv~kal~lGAd~V~ig~~~l 310 (367)
.++-++++++.. +.++.|.+||||+.. .+.++..+|||.+.+||.++
T Consensus 149 ~~~KI~~l~~~~~~~~~~~~I~vDGGI~~~-~~~~~~~aGad~~V~Gs~iF 198 (201)
T PF00834_consen 149 VLEKIRELRKLIPENGLDFEIEVDGGINEE-NIKQLVEAGADIFVAGSAIF 198 (201)
T ss_dssp HHHHHHHHHHHHHHHTCGSEEEEESSESTT-THHHHHHHT--EEEESHHHH
T ss_pred HHHHHHHHHHHHHhcCCceEEEEECCCCHH-HHHHHHHcCCCEEEECHHHh
Confidence 555555555443 236999999999874 67788889999999998654
|
1.3.1 from EC) (also known as pentose-5-phosphate 3-epimerase or PPE) is the enzyme that converts D-ribulose 5-phosphate into D-xylulose 5-phosphate in Calvin's reductive pentose phosphate cycle. In Ralstonia eutropha (Alcaligenes eutrophus) two copies of the gene coding for PPE are known [], one is chromosomally encoded P40117 from SWISSPROT, the other one is on a plasmid Q04539 from SWISSPROT. PPE has been found in a wide range of bacteria, archaebacteria, fungi and plants. All the proteins have from 209 to 241 amino acid residues. The enzyme has a TIM barrel structure.; GO: 0004750 ribulose-phosphate 3-epimerase activity, 0005975 carbohydrate metabolic process; PDB: 3CTL_A 3CT7_D 3CU2_A 1RPX_A 3OVR_A 3OVP_A 3OVQ_B 3QC3_B 3INP_A 1TQJ_D .... |
| >cd00331 IGPS Indole-3-glycerol phosphate synthase (IGPS); an enzyme in the tryptophan biosynthetic pathway, catalyzing the ring closure reaction of 1-(o-carboxyphenylamino)-1-deoxyribulose-5-phosphate (CdRP) to indole-3-glycerol phosphate (IGP), accompanied by the release of carbon dioxide and water | Back alignment and domain information |
|---|
Probab=95.30 E-value=0.072 Score=48.77 Aligned_cols=71 Identities=24% Similarity=0.286 Sum_probs=54.0
Q ss_pred HHHHHHHHHcCCcEEEEcCCCCCCCCCccchHHHHHHHHHHhcCCCcEEEecCCCCHHHHHHHHHcCCCEEEechHH
Q 017718 233 AEDARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFIGRPV 309 (367)
Q Consensus 233 ~~~a~~~~~~G~d~i~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~~~via~GGI~~~~dv~kal~lGAd~V~ig~~~ 309 (367)
.+.|+...++||++|.+...-+. .. ...+.+..+++.+ ++||+.-|+|++..++..++.+|||+|.++.+.
T Consensus 34 ~~~A~~~~~~GA~~l~v~~~~~~-~~---g~~~~~~~i~~~v--~iPi~~~~~i~~~~~v~~~~~~Gad~v~l~~~~ 104 (217)
T cd00331 34 VEIAKAYEKAGAAAISVLTEPKY-FQ---GSLEDLRAVREAV--SLPVLRKDFIIDPYQIYEARAAGADAVLLIVAA 104 (217)
T ss_pred HHHHHHHHHcCCCEEEEEeCccc-cC---CCHHHHHHHHHhc--CCCEEECCeecCHHHHHHHHHcCCCEEEEeecc
Confidence 46799999999999988532111 11 2335566666655 799999999999999999999999999988643
|
IGPS is active as a separate monomer in most organisms, but is also found fused to other enzymes as part of a bifunctional or multifunctional enzyme involved in tryptophan biosynthesis. |
| >COG0329 DapA Dihydrodipicolinate synthase/N-acetylneuraminate lyase [Amino acid transport and metabolism / Cell envelope biogenesis, outer membrane] | Back alignment and domain information |
|---|
Probab=95.22 E-value=0.15 Score=49.36 Aligned_cols=77 Identities=27% Similarity=0.408 Sum_probs=51.2
Q ss_pred HHHHHHcCCcEEEEcCCCCCCCCCcc-chHHHHHHHHHHhcCCCcEEEecCCCCHHHHH----HHHHcCCCEEEechHHH
Q 017718 236 ARIAVQAGAAGIIVSNHGARQLDYVP-ATIMALEEVVKATQGRIPVFLDGGVRRGTDVF----KALALGASGIFIGRPVV 310 (367)
Q Consensus 236 a~~~~~~G~d~i~vs~~gg~~~~~~~-~~~~~l~~i~~~~~~~~~via~GGI~~~~dv~----kal~lGAd~V~ig~~~l 310 (367)
++.+++.|+|+|++.|+.|-...-.. -..+.+..+++.+.+++|||+--|=.+-.+++ .+-.+|||++++-.|++
T Consensus 31 v~~li~~Gv~gi~~~GttGE~~~Ls~eEr~~v~~~~v~~~~grvpviaG~g~~~t~eai~lak~a~~~Gad~il~v~PyY 110 (299)
T COG0329 31 VEFLIAAGVDGLVVLGTTGESPTLTLEERKEVLEAVVEAVGGRVPVIAGVGSNSTAEAIELAKHAEKLGADGILVVPPYY 110 (299)
T ss_pred HHHHHHcCCCEEEECCCCccchhcCHHHHHHHHHHHHHHHCCCCcEEEecCCCcHHHHHHHHHHHHhcCCCEEEEeCCCC
Confidence 46788999999999765542211111 12345566667777799999944444444444 33348999999999998
Q ss_pred HH
Q 017718 311 YS 312 (367)
Q Consensus 311 ~~ 312 (367)
+.
T Consensus 111 ~k 112 (299)
T COG0329 111 NK 112 (299)
T ss_pred cC
Confidence 74
|
|
| >PRK08005 epimerase; Validated | Back alignment and domain information |
|---|
Probab=95.21 E-value=1.5 Score=40.25 Aligned_cols=91 Identities=14% Similarity=0.133 Sum_probs=56.8
Q ss_pred HHHhhcCCCEEEEec--CCHHHHHHHHHcCCcEEEEc--CCCCCCCCCccchHHHHHHHHHHhcCCCcEEEecCCCCHHH
Q 017718 216 WLQTITKLPILVKGV--LTAEDARIAVQAGAAGIIVS--NHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTD 291 (367)
Q Consensus 216 ~l~~~~~~Pv~vK~v--~~~~~a~~~~~~G~d~i~vs--~~gg~~~~~~~~~~~~l~~i~~~~~~~~~via~GGI~~~~d 291 (367)
++|+. ++...+... .+.+..+...+ -+|.|.+- +-|......-+..++-+.++++... ...|.+||||. .+.
T Consensus 101 ~Ik~~-G~k~GlAlnP~Tp~~~i~~~l~-~vD~VlvMsV~PGf~GQ~f~~~~~~KI~~l~~~~~-~~~I~VDGGI~-~~~ 176 (210)
T PRK08005 101 DIRAI-GAKAGLALNPATPLLPYRYLAL-QLDALMIMTSEPDGRGQQFIAAMCEKVSQSREHFP-AAECWADGGIT-LRA 176 (210)
T ss_pred HHHHc-CCcEEEEECCCCCHHHHHHHHH-hcCEEEEEEecCCCccceecHHHHHHHHHHHHhcc-cCCEEEECCCC-HHH
Confidence 55543 444444443 44566665554 47777663 2222222334556666776665543 35799999997 566
Q ss_pred HHHHHHcCCCEEEechHHH
Q 017718 292 VFKALALGASGIFIGRPVV 310 (367)
Q Consensus 292 v~kal~lGAd~V~ig~~~l 310 (367)
+.++..+|||.+.+||.++
T Consensus 177 i~~l~~aGad~~V~GsaiF 195 (210)
T PRK08005 177 ARLLAAAGAQHLVIGRALF 195 (210)
T ss_pred HHHHHHCCCCEEEEChHhh
Confidence 7788899999999998753
|
|
| >TIGR00683 nanA N-acetylneuraminate lyase | Back alignment and domain information |
|---|
Probab=95.17 E-value=0.15 Score=48.98 Aligned_cols=91 Identities=11% Similarity=0.150 Sum_probs=56.5
Q ss_pred HHHHHHcC-CcEEEEcCCCCCCCCCccc-hHHHHHHHHHHhcCCCcEEEecCCCCHHHHHH----HHHcCCCEEEechHH
Q 017718 236 ARIAVQAG-AAGIIVSNHGARQLDYVPA-TIMALEEVVKATQGRIPVFLDGGVRRGTDVFK----ALALGASGIFIGRPV 309 (367)
Q Consensus 236 a~~~~~~G-~d~i~vs~~gg~~~~~~~~-~~~~l~~i~~~~~~~~~via~GGI~~~~dv~k----al~lGAd~V~ig~~~ 309 (367)
++.+.+.| +++|.+.|+.|-...-... ..+.+..+++.+.+++||++.=|-.+-.|+++ +-.+|||+|++..|+
T Consensus 27 i~~~i~~G~v~gi~~~GstGE~~~Lt~eEr~~~~~~~~~~~~~~~pvi~gv~~~~t~~~i~la~~a~~~Gad~v~v~~P~ 106 (290)
T TIGR00683 27 IRHNIDKMKVDGLYVGGSTGENFMLSTEEKKEIFRIAKDEAKDQIALIAQVGSVNLKEAVELGKYATELGYDCLSAVTPF 106 (290)
T ss_pred HHHHHhCCCcCEEEECCcccccccCCHHHHHHHHHHHHHHhCCCCcEEEecCCCCHHHHHHHHHHHHHhCCCEEEEeCCc
Confidence 45678899 9999997655432211111 23345556666667899988644444555543 334799999999998
Q ss_pred HHHhhccChHHHHHHHHHHH
Q 017718 310 VYSLAAEGEKGVRRVLEMLR 329 (367)
Q Consensus 310 l~~l~~~G~~~v~~~i~~l~ 329 (367)
.+.. .++++.++++.+.
T Consensus 107 y~~~---~~~~i~~yf~~v~ 123 (290)
T TIGR00683 107 YYKF---SFPEIKHYYDTII 123 (290)
T ss_pred CCCC---CHHHHHHHHHHHH
Confidence 7642 2455555554443
|
N-acetylneuraminate lyase is also known as N-acetylneuraminic acid aldolase, sialic acid aldolase, or sialate lyase. It is an intracellular enzyme. The structure of this homotetrameric enzyme related to dihydrodipicolinate synthase is known. In Clostridium tertium, the enzyme appears to be in an operon with a secreted sialidase that releases sialic acid from host sialoglycoconjugates. In several E. coli strains, however, this enzyme is responsible for N-acetyl-D-neuraminic acid synthesis for capsule production by condensing N-acetyl-D-mannosamine and pyruvate. |
| >COG2876 AroA 3-deoxy-D-arabino-heptulosonate 7-phosphate (DAHP) synthase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=95.15 E-value=1.4 Score=41.65 Aligned_cols=92 Identities=28% Similarity=0.459 Sum_probs=59.9
Q ss_pred cHHHHHh--hcCCCEEEEecC--CHHH----HHHHHHcCCcEEEEcCCCCCCCCCc-cc--hHHHHHHHHHHhcCCCcEE
Q 017718 213 SWKWLQT--ITKLPILVKGVL--TAED----ARIAVQAGAAGIIVSNHGARQLDYV-PA--TIMALEEVVKATQGRIPVF 281 (367)
Q Consensus 213 ~~~~l~~--~~~~Pv~vK~v~--~~~~----a~~~~~~G~d~i~vs~~gg~~~~~~-~~--~~~~l~~i~~~~~~~~~vi 281 (367)
+++-|++ +.++||++|-.+ +.++ |+.....|-..|++.-.|=|+++.. +- .+..++-+++.. .+|||
T Consensus 141 NF~LLke~G~~~kPvLLKRg~~aTieEwL~AAEYI~s~GN~~vILCERGIRtfe~~TRntLDi~aV~~~kq~T--HLPVi 218 (286)
T COG2876 141 NFALLKEVGRQNKPVLLKRGLSATIEEWLNAAEYILSHGNGNVILCERGIRTFEKATRNTLDISAVPILKQET--HLPVI 218 (286)
T ss_pred hhHHHHHhcccCCCeEEecCccccHHHHHHHHHHHHhCCCCcEEEEecccccccccccceechHHHHHHHhhc--CCCEE
Confidence 3444444 357999999864 4554 7777888988888876665655543 22 345566666654 79999
Q ss_pred Eec----CCCCHHH--HHHHHHcCCCEEEec
Q 017718 282 LDG----GVRRGTD--VFKALALGASGIFIG 306 (367)
Q Consensus 282 a~G----GI~~~~d--v~kal~lGAd~V~ig 306 (367)
+|= |=++... +..+++.|||++|+-
T Consensus 219 vDpSH~~Grr~lv~pla~AA~AaGAdglmiE 249 (286)
T COG2876 219 VDPSHATGRRDLVEPLAKAAIAAGADGLMIE 249 (286)
T ss_pred ECCCCcccchhhHHHHHHHHHhccCCeeEEE
Confidence 953 3333222 235667899999985
|
|
| >cd00950 DHDPS Dihydrodipicolinate synthase (DHDPS) is a key enzyme in lysine biosynthesis | Back alignment and domain information |
|---|
Probab=95.14 E-value=2.8 Score=39.85 Aligned_cols=182 Identities=19% Similarity=0.179 Sum_probs=101.6
Q ss_pred ceEeCcccchhccCChhhHHHHHHHHHcCCceee--c---CCCCCCHHHHH-------hhCC--CceEEEEeecCCHHHH
Q 017718 73 PIMIAPTAMQKMAHPEGEYATARAASAAGTIMTL--S---SWSTSSVEEVA-------STGP--GIRFFQLYVYKDRNVV 138 (367)
Q Consensus 73 Pi~iAPm~~~~l~~~~~e~~~a~aa~~~G~~~~v--s---~~~~~~~e~i~-------~~~~--~~~~~QLy~~~d~~~~ 138 (367)
|..+.|+.-.+-.+.++-....+-+.+.|+...+ + +....+.+|-. +... -+.++++- ..+.+.+
T Consensus 6 ~~~~TPf~~dg~iD~~~~~~~i~~l~~~Gv~gl~v~GstGE~~~lt~~Er~~l~~~~~~~~~~~~~vi~gv~-~~~~~~~ 84 (284)
T cd00950 6 TALVTPFKDDGSVDFDALERLIEFQIENGTDGLVVCGTTGESPTLSDEEHEAVIEAVVEAVNGRVPVIAGTG-SNNTAEA 84 (284)
T ss_pred eeeeCCcCCCCCcCHHHHHHHHHHHHHcCCCEEEECCCCcchhhCCHHHHHHHHHHHHHHhCCCCcEEeccC-CccHHHH
Confidence 5567777544444444555777777888875443 2 23345665522 2222 35566654 3466777
Q ss_pred HHHHHHHHHcCCcEEEEecCCCCCCchhHHhhhhcCCCCccccccccccccCccccccchhhHHHhhhccCccccHHHHH
Q 017718 139 AQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLTLKNFQGLDLGKMDEANDSGLAAYVAGQIDRSLSWKWLQ 218 (367)
Q Consensus 139 ~~~l~ra~~~G~~ai~itvd~p~~g~r~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~l~ 218 (367)
.++++.|+++|++++.+.- |.. .... ...+.+ -++.+.
T Consensus 85 ~~~a~~a~~~G~d~v~~~~--P~~-----------------~~~~-------------~~~l~~----------~~~~ia 122 (284)
T cd00950 85 IELTKRAEKAGADAALVVT--PYY-----------------NKPS-------------QEGLYA----------HFKAIA 122 (284)
T ss_pred HHHHHHHHHcCCCEEEEcc--ccc-----------------CCCC-------------HHHHHH----------HHHHHH
Confidence 8889999999999998731 211 0000 000111 123555
Q ss_pred hhcCCCEEEEec-------CCHHHHHHHHHcC-CcEEEEcCCCCCCCCCccchHHHHHHHHHHhcCCCcEEEecCCCCHH
Q 017718 219 TITKLPILVKGV-------LTAEDARIAVQAG-AAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGT 290 (367)
Q Consensus 219 ~~~~~Pv~vK~v-------~~~~~a~~~~~~G-~d~i~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~~~via~GGI~~~~ 290 (367)
+..++||++=.. .+++..+.+.+.. +-+|.-+ . .....+.++.+..++++.|+. | ...
T Consensus 123 ~~~~~pi~lYn~P~~~g~~ls~~~~~~L~~~p~v~giK~s---------~-~~~~~~~~~~~~~~~~~~v~~-G---~d~ 188 (284)
T cd00950 123 EATDLPVILYNVPGRTGVNIEPETVLRLAEHPNIVGIKEA---------T-GDLDRVSELIALCPDDFAVLS-G---DDA 188 (284)
T ss_pred hcCCCCEEEEEChhHhCCCCCHHHHHHHhcCCCEEEEEEC---------C-CCHHHHHHHHHhCCCCeEEEe-C---ChH
Confidence 667888887653 4677777776542 2222211 1 123344455555544565553 4 234
Q ss_pred HHHHHHHcCCCEEEechHHHH
Q 017718 291 DVFKALALGASGIFIGRPVVY 311 (367)
Q Consensus 291 dv~kal~lGAd~V~ig~~~l~ 311 (367)
.+...+.+|+++++.|...++
T Consensus 189 ~~~~~~~~G~~G~~s~~~n~~ 209 (284)
T cd00950 189 LTLPFLALGGVGVISVAANVA 209 (284)
T ss_pred hHHHHHHCCCCEEEehHHHhh
Confidence 566788899999998886543
|
It catalyzes the aldol condensation of L-aspartate-beta- semialdehyde and pyruvate to dihydropicolinic acid via a Schiff base formation between pyruvate and a lysine residue. The functional enzyme is a homotetramer consisting of a dimer of dimers. DHDPS is member of dihydrodipicolinate synthase family that comprises several pyruvate-dependent class I aldolases that use the same catalytic step to catalyze different reactions in different pathways. |
| >TIGR03249 KdgD 5-dehydro-4-deoxyglucarate dehydratase | Back alignment and domain information |
|---|
Probab=95.14 E-value=0.14 Score=49.27 Aligned_cols=91 Identities=19% Similarity=0.299 Sum_probs=57.9
Q ss_pred HHHHHHcCCcEEEEcCCCCCCCCCccc-hHHHHHHHHHHhcCCCcEEEecCCCCHHHHHHH----HHcCCCEEEechHHH
Q 017718 236 ARIAVQAGAAGIIVSNHGARQLDYVPA-TIMALEEVVKATQGRIPVFLDGGVRRGTDVFKA----LALGASGIFIGRPVV 310 (367)
Q Consensus 236 a~~~~~~G~d~i~vs~~gg~~~~~~~~-~~~~l~~i~~~~~~~~~via~GGI~~~~dv~ka----l~lGAd~V~ig~~~l 310 (367)
++.+.+.|+|+|.+.|+.|-...-... ..+++..+++.+.+++||++.=|- +-.++++. -.+|||++++-.|++
T Consensus 32 i~~l~~~Gv~gi~v~GstGE~~~Lt~eEr~~v~~~~~~~~~g~~pvi~gv~~-~t~~ai~~a~~a~~~Gadav~~~pP~y 110 (296)
T TIGR03249 32 IEWLLGYGLEALFAAGGTGEFFSLTPAEYEQVVEIAVSTAKGKVPVYTGVGG-NTSDAIEIARLAEKAGADGYLLLPPYL 110 (296)
T ss_pred HHHHHhcCCCEEEECCCCcCcccCCHHHHHHHHHHHHHHhCCCCcEEEecCc-cHHHHHHHHHHHHHhCCCEEEECCCCC
Confidence 466788999999997655432221222 234455566667778999986553 45555543 347999999999987
Q ss_pred HHhhccChHHHHHHHHHHHH
Q 017718 311 YSLAAEGEKGVRRVLEMLRE 330 (367)
Q Consensus 311 ~~l~~~G~~~v~~~i~~l~~ 330 (367)
+.. .++++.+++..+.+
T Consensus 111 ~~~---s~~~i~~~f~~v~~ 127 (296)
T TIGR03249 111 ING---EQEGLYAHVEAVCE 127 (296)
T ss_pred CCC---CHHHHHHHHHHHHh
Confidence 642 34555555555443
|
5-dehydro-4-deoxyglucarate dehydratase not only catalyzes the dehydration of the substrate (diol to ketone + water), but causes the decarboxylation of the intermediate product to yield 2-oxoglutarate semialdehyde (2,5-dioxopentanoate). The gene for the enzyme is usually observed in the vicinity of transporters and dehydratases handling D-galactarate and D-gluconate as well as aldehyde dehydrogenases which convert the product to alpha-ketoglutarate. |
| >PRK01130 N-acetylmannosamine-6-phosphate 2-epimerase; Provisional | Back alignment and domain information |
|---|
Probab=95.11 E-value=0.81 Score=41.95 Aligned_cols=86 Identities=14% Similarity=0.047 Sum_probs=54.4
Q ss_pred HHHhhcCCCEEEE---e-----c---CCHHHHHHHHHcCCcEEEEcCCCCCCCCCccchHHHHHHHHHHhcCCCcEEEec
Q 017718 216 WLQTITKLPILVK---G-----V---LTAEDARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDG 284 (367)
Q Consensus 216 ~l~~~~~~Pv~vK---~-----v---~~~~~a~~~~~~G~d~i~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~~~via~G 284 (367)
.+|+.+++|++.. . + .+.+.++.+.++|+|.|++...-... ..+....+.+..+++. ..++++.
T Consensus 50 ~i~~~~~~Pil~~~~~d~~~~~~~~~~~~~~v~~a~~aGad~I~~d~~~~~~-p~~~~~~~~i~~~~~~--~~i~vi~-- 124 (221)
T PRK01130 50 AIRAVVDVPIIGIIKRDYPDSEVYITPTLKEVDALAAAGADIIALDATLRPR-PDGETLAELVKRIKEY--PGQLLMA-- 124 (221)
T ss_pred HHHHhCCCCEEEEEecCCCCCCceECCCHHHHHHHHHcCCCEEEEeCCCCCC-CCCCCHHHHHHHHHhC--CCCeEEE--
Confidence 5566667887622 1 1 23567999999999988775311100 0011233445444432 3577765
Q ss_pred CCCCHHHHHHHHHcCCCEEEec
Q 017718 285 GVRRGTDVFKALALGASGIFIG 306 (367)
Q Consensus 285 GI~~~~dv~kal~lGAd~V~ig 306 (367)
++.+.+++.++..+|+|.+.++
T Consensus 125 ~v~t~ee~~~a~~~G~d~i~~~ 146 (221)
T PRK01130 125 DCSTLEEGLAAQKLGFDFIGTT 146 (221)
T ss_pred eCCCHHHHHHHHHcCCCEEEcC
Confidence 5789999999999999999774
|
|
| >PRK09250 fructose-bisphosphate aldolase; Provisional | Back alignment and domain information |
|---|
Probab=95.08 E-value=0.21 Score=49.08 Aligned_cols=76 Identities=24% Similarity=0.254 Sum_probs=50.8
Q ss_pred HHHHHHcCCcEEEEcCCC---CC-CC------------CCccchHHHHHHHHHHh-cCCCcEEEecCCCCH-HHH----H
Q 017718 236 ARIAVQAGAAGIIVSNHG---AR-QL------------DYVPATIMALEEVVKAT-QGRIPVFLDGGVRRG-TDV----F 293 (367)
Q Consensus 236 a~~~~~~G~d~i~vs~~g---g~-~~------------~~~~~~~~~l~~i~~~~-~~~~~via~GGI~~~-~dv----~ 293 (367)
++.+.+.|||.|-+--.| +. .. .......+.++.+.+.+ .+++||+.+||=... +|+ .
T Consensus 223 aRiaaELGADIVKv~yp~~~~~f~~v~~~~~~~~~~~~~~~~~~~~~~~~~V~ac~ag~vpVviAGG~k~~~~e~L~~v~ 302 (348)
T PRK09250 223 NHLAATIGADIIKQKLPTNNGGYKAINFGKTDDRVYSKLTSDHPIDLVRYQVANCYMGRRGLINSGGASKGEDDLLDAVR 302 (348)
T ss_pred HHHHHHHcCCEEEecCCCChhhHHHhhcccccccccccccccchHHHHHHHHHhhccCCceEEEeCCCCCCHHHHHHHHH
Confidence 788999999999985432 10 00 01123445566666654 347999999998854 333 3
Q ss_pred HH---HHcCCCEEEechHHHH
Q 017718 294 KA---LALGASGIFIGRPVVY 311 (367)
Q Consensus 294 ka---l~lGAd~V~ig~~~l~ 311 (367)
.+ +..||.++.+||=+..
T Consensus 303 ~a~~~i~aGa~Gv~iGRNIfQ 323 (348)
T PRK09250 303 TAVINKRAGGMGLIIGRKAFQ 323 (348)
T ss_pred HHHHhhhcCCcchhhchhhhc
Confidence 56 7789999999996654
|
|
| >TIGR01361 DAHP_synth_Bsub phospho-2-dehydro-3-deoxyheptonate aldolase | Back alignment and domain information |
|---|
Probab=95.06 E-value=1.3 Score=42.10 Aligned_cols=88 Identities=24% Similarity=0.351 Sum_probs=56.7
Q ss_pred hcCCCEEEEecC--CHHH----HHHHHHcCCcEEEEcCCCCCCCCC---ccchHHHHHHHHHHhcCCCcEEEecCCCC--
Q 017718 220 ITKLPILVKGVL--TAED----ARIAVQAGAAGIIVSNHGARQLDY---VPATIMALEEVVKATQGRIPVFLDGGVRR-- 288 (367)
Q Consensus 220 ~~~~Pv~vK~v~--~~~~----a~~~~~~G~d~i~vs~~gg~~~~~---~~~~~~~l~~i~~~~~~~~~via~GGI~~-- 288 (367)
.+++||++|..+ +.++ ++.+.+.|.+-|++--.|-+..+. -...+..+..+++.. .+||+.|.+=..
T Consensus 130 ~~gkPVilk~G~~~t~~e~~~Ave~i~~~Gn~~i~l~~rG~s~y~~~~~~~~dl~~i~~lk~~~--~~pV~~ds~Hs~G~ 207 (260)
T TIGR01361 130 KQGKPVLLKRGMGNTIEEWLYAAEYILSSGNGNVILCERGIRTFEKATRNTLDLSAVPVLKKET--HLPIIVDPSHAAGR 207 (260)
T ss_pred cCCCcEEEeCCCCCCHHHHHHHHHHHHHcCCCcEEEEECCCCCCCCCCcCCcCHHHHHHHHHhh--CCCEEEcCCCCCCc
Confidence 368999999874 4555 556667888766664233323312 124566777777655 699999433222
Q ss_pred ----HHHHHHHHHcCCCEEEechHH
Q 017718 289 ----GTDVFKALALGASGIFIGRPV 309 (367)
Q Consensus 289 ----~~dv~kal~lGAd~V~ig~~~ 309 (367)
..-...|.++||++++|-+-+
T Consensus 208 r~~~~~~~~aAva~Ga~gl~iE~H~ 232 (260)
T TIGR01361 208 RDLVIPLAKAAIAAGADGLMIEVHP 232 (260)
T ss_pred cchHHHHHHHHHHcCCCEEEEEeCC
Confidence 234457888999999998755
|
The member of this family from Synechocystis PCC 6803, CcmA, was shown to be essential for carboxysome formation. However, no other candidate for this enzyme is present in that species, chorismate biosynthesis does occur, other species having this protein lack carboxysomes but appear to make chorismate, and a requirement of CcmA for carboxysome formation does not prohibit a role in chorismate biosynthesis. |
| >PF01081 Aldolase: KDPG and KHG aldolase; InterPro: IPR000887 4-Hydroxy-2-oxoglutarate aldolase (4 | Back alignment and domain information |
|---|
Probab=95.04 E-value=0.14 Score=46.50 Aligned_cols=76 Identities=30% Similarity=0.269 Sum_probs=51.9
Q ss_pred HHHhhc-CCCEEEEecCCHHHHHHHHHcCCcEEEEcCCCCCCCCCccchHHHHHHHHHHhcCCCcEEEecCCCCHHHHHH
Q 017718 216 WLQTIT-KLPILVKGVLTAEDARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFK 294 (367)
Q Consensus 216 ~l~~~~-~~Pv~vK~v~~~~~a~~~~~~G~d~i~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~~~via~GGI~~~~dv~k 294 (367)
.+++.. ++-|.+..+.+.++++.+.++|+++++--+ -+.+.+..+.+ . ++|++- |+.|+.++.+
T Consensus 52 ~l~~~~p~~~vGAGTV~~~e~a~~a~~aGA~FivSP~----------~~~~v~~~~~~-~--~i~~iP--G~~TptEi~~ 116 (196)
T PF01081_consen 52 ALRKEFPDLLVGAGTVLTAEQAEAAIAAGAQFIVSPG----------FDPEVIEYARE-Y--GIPYIP--GVMTPTEIMQ 116 (196)
T ss_dssp HHHHHHTTSEEEEES--SHHHHHHHHHHT-SEEEESS------------HHHHHHHHH-H--TSEEEE--EESSHHHHHH
T ss_pred HHHHHCCCCeeEEEeccCHHHHHHHHHcCCCEEECCC----------CCHHHHHHHHH-c--CCcccC--CcCCHHHHHH
Confidence 455555 466777778999999999999999987521 13344444433 2 566665 7999999999
Q ss_pred HHHcCCCEEEec
Q 017718 295 ALALGASGIFIG 306 (367)
Q Consensus 295 al~lGAd~V~ig 306 (367)
|+.+||+.|=+-
T Consensus 117 A~~~G~~~vK~F 128 (196)
T PF01081_consen 117 ALEAGADIVKLF 128 (196)
T ss_dssp HHHTT-SEEEET
T ss_pred HHHCCCCEEEEe
Confidence 999999988664
|
1.3.16 from EC) (KHG-aldolase) catalyzes the interconversion of 4-hydroxy-2-oxoglutarate into pyruvate and glyoxylate. Phospho-2-dehydro-3-deoxygluconate aldolase (4.1.2.14 from EC) (KDPG-aldolase) catalyzes the interconversion of 6-phospho-2-dehydro-3-deoxy-D-gluconate into pyruvate and glyceraldehyde 3-phosphate. These two enzymes are structurally and functionally related []. They are both homotrimeric proteins of approximately 220 amino-acid residues. They are class I aldolases whose catalytic mechanism involves the formation of a Schiff-base intermediate between the substrate and the epsilon-amino group of a lysine residue. In both enzymes, an arginine is required for catalytic activity.; GO: 0003824 catalytic activity, 0008152 metabolic process; PDB: 3VCR_A 1FQ0_A 1EUN_A 1EUA_B 1FWR_A 2C0A_B 1WBH_A 1WAU_A 2YW3_B 2YW4_A .... |
| >COG3010 NanE Putative N-acetylmannosamine-6-phosphate epimerase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=94.92 E-value=0.68 Score=42.14 Aligned_cols=84 Identities=18% Similarity=0.101 Sum_probs=55.3
Q ss_pred HHHHHhhcCCCEEE--Ee---------cCCHHHHHHHHHcCCcEEEEcCCCCCCCCCccchHHHHHHHHHHhcCCCcEEE
Q 017718 214 WKWLQTITKLPILV--KG---------VLTAEDARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFL 282 (367)
Q Consensus 214 ~~~l~~~~~~Pv~v--K~---------v~~~~~a~~~~~~G~d~i~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~~~via 282 (367)
++.+++.+++|||= |- ..+.++...+.++|++.|.+..+-....++ .--+.+.++ + .--.++
T Consensus 58 Ikai~~~v~vPIIGIiKrd~~~s~v~ITptlkeVd~L~~~Ga~IIA~DaT~R~RP~~--~~~~~i~~~-k----~~~~l~ 130 (229)
T COG3010 58 IKAIRAVVDVPIIGIIKRDYPDSPVRITPTLKEVDALAEAGADIIAFDATDRPRPDG--DLEELIARI-K----YPGQLA 130 (229)
T ss_pred HHHHHhhCCCCeEEEEecCCCCCCceecccHHHHHHHHHCCCcEEEeecccCCCCcc--hHHHHHHHh-h----cCCcEE
Confidence 44667777888752 21 245789999999999999887643322222 222333332 1 222455
Q ss_pred ecCCCCHHHHHHHHHcCCCEEE
Q 017718 283 DGGVRRGTDVFKALALGASGIF 304 (367)
Q Consensus 283 ~GGI~~~~dv~kal~lGAd~V~ 304 (367)
.-.+.|.+|.+-|..+|+|.|+
T Consensus 131 MAD~St~ee~l~a~~~G~D~IG 152 (229)
T COG3010 131 MADCSTFEEGLNAHKLGFDIIG 152 (229)
T ss_pred EeccCCHHHHHHHHHcCCcEEe
Confidence 5668999999999999999873
|
|
| >PRK13957 indole-3-glycerol-phosphate synthase; Provisional | Back alignment and domain information |
|---|
Probab=94.90 E-value=0.16 Score=47.73 Aligned_cols=70 Identities=24% Similarity=0.299 Sum_probs=55.0
Q ss_pred HHHHHHHHcCCcEEEEcCCCCCCCCCccchHHHHHHHHHHhcCCCcEEEecCCCCHHHHHHHHHcCCCEEEechHH
Q 017718 234 EDARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFIGRPV 309 (367)
Q Consensus 234 ~~a~~~~~~G~d~i~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~~~via~GGI~~~~dv~kal~lGAd~V~ig~~~ 309 (367)
+-|+...++||++|.|-.-+. .-...++.|..+++.+ ++||+.-+.|-+..++.++..+|||+|.+=-.+
T Consensus 65 ~~A~~y~~~GA~aISVlTe~~----~F~Gs~~~l~~v~~~v--~~PvL~KDFIid~~QI~ea~~~GADavLLI~~~ 134 (247)
T PRK13957 65 QIAKTYETLGASAISVLTDQS----YFGGSLEDLKSVSSEL--KIPVLRKDFILDEIQIREARAFGASAILLIVRI 134 (247)
T ss_pred HHHHHHHHCCCcEEEEEcCCC----cCCCCHHHHHHHHHhc--CCCEEeccccCCHHHHHHHHHcCCCEEEeEHhh
Confidence 558889999999998854221 1123567777887777 799999999999999999999999999765433
|
|
| >PRK04147 N-acetylneuraminate lyase; Provisional | Back alignment and domain information |
|---|
Probab=94.88 E-value=0.19 Score=48.26 Aligned_cols=90 Identities=17% Similarity=0.266 Sum_probs=57.6
Q ss_pred HHHHHH-cCCcEEEEcCCCCCCCCCccc-hHHHHHHHHHHhcCCCcEEEecCCCCHHHHHH----HHHcCCCEEEechHH
Q 017718 236 ARIAVQ-AGAAGIIVSNHGARQLDYVPA-TIMALEEVVKATQGRIPVFLDGGVRRGTDVFK----ALALGASGIFIGRPV 309 (367)
Q Consensus 236 a~~~~~-~G~d~i~vs~~gg~~~~~~~~-~~~~l~~i~~~~~~~~~via~GGI~~~~dv~k----al~lGAd~V~ig~~~ 309 (367)
++.+.+ .|+++|.+.++.|-...-... -.+++..+++.+++++|||+.=|-.+-.++++ +-.+|||+|++-.|+
T Consensus 30 i~~l~~~~Gv~gi~v~GstGE~~~Ls~eEr~~~~~~~~~~~~~~~~viagvg~~~t~~ai~~a~~a~~~Gad~v~v~~P~ 109 (293)
T PRK04147 30 VRFNIEKQGIDGLYVGGSTGEAFLLSTEEKKQVLEIVAEEAKGKVKLIAQVGSVNTAEAQELAKYATELGYDAISAVTPF 109 (293)
T ss_pred HHHHHhcCCCCEEEECCCccccccCCHHHHHHHHHHHHHHhCCCCCEEecCCCCCHHHHHHHHHHHHHcCCCEEEEeCCc
Confidence 456778 999999997765532111111 23455666667777899999555556666654 345899999999998
Q ss_pred HHHhhccChHHHHHHHHHH
Q 017718 310 VYSLAAEGEKGVRRVLEML 328 (367)
Q Consensus 310 l~~l~~~G~~~v~~~i~~l 328 (367)
.+.. .++++.++++.+
T Consensus 110 y~~~---~~~~l~~~f~~v 125 (293)
T PRK04147 110 YYPF---SFEEICDYYREI 125 (293)
T ss_pred CCCC---CHHHHHHHHHHH
Confidence 7642 234444444443
|
|
| >TIGR01303 IMP_DH_rel_1 IMP dehydrogenase family protein | Back alignment and domain information |
|---|
Probab=94.86 E-value=0.13 Score=52.90 Aligned_cols=244 Identities=17% Similarity=0.220 Sum_probs=128.8
Q ss_pred ccccceeeccccC-CC-CCCccceeEcCeeeccceEeCcccchhccCChhhHHHHHHHHHcCCceeecCCCCCCHHHHHh
Q 017718 42 AFSRILFRPRILI-DV-SKIDMNTTVLGFKISMPIMIAPTAMQKMAHPEGEYATARAASAAGTIMTLSSWSTSSVEEVAS 119 (367)
Q Consensus 42 ~~~~i~l~pr~l~-~~-~~vd~st~i~g~~l~~Pi~iAPm~~~~l~~~~~e~~~a~aa~~~G~~~~vs~~~~~~~e~i~~ 119 (367)
.||++.|+|.... .. +++|++|. +..+++.||+-|||--.+ |..+|.+.++.|-..++.. ++++++..+
T Consensus 13 tfddvll~p~~~~~~~~~~v~~~t~-~~~~l~~P~vsa~mdtvT------e~~MAi~~A~~GGigvIh~--n~~i~~qae 83 (475)
T TIGR01303 13 TYNDVFMVPSRSEVGSRFDVDLSTA-DGTGTTIPLVVANMTAVA------GRRMAETVARRGGIVILPQ--DLPIPAVKQ 83 (475)
T ss_pred CccceEEccCccCccCCCceeeccc-ccCccccceeeccchhhH------HHHHHHHHHHCCCEEEEeC--CCCHHHHHH
Confidence 5999999998653 33 48899988 457999999999995543 7899999999998888853 456665432
Q ss_pred hC---C-C----ceEEEEeecCCHHHHHHHHHHHHHcCCcEEEEecCC-CCCCchhHHhhhhcCCCCccccccccccccC
Q 017718 120 TG---P-G----IRFFQLYVYKDRNVVAQLVRRAERAGFKAIALTVDT-PRLGRREADIKNRFTLPPFLTLKNFQGLDLG 190 (367)
Q Consensus 120 ~~---~-~----~~~~QLy~~~d~~~~~~~l~ra~~~G~~ai~itvd~-p~~g~r~~~~~~~~~~p~~~~~~~~~~~~~~ 190 (367)
.. . . ...+.+. .+ .-+.++++...+.+...++++=+. ++.-.-.+|++.. +.......+......
T Consensus 84 ~v~~VKv~eim~~~pvtv~--p~-~tI~eA~~lm~~~~~~~~vVvD~gklvGIVT~rDL~~~---~~~~~V~dIMt~~li 157 (475)
T TIGR01303 84 TVAFVKSRDLVLDTPITLA--PH-DTVSDAMALIHKRAHGAAVVILEDRPVGLVTDSDLLGV---DRFTQVRDIMSTDLV 157 (475)
T ss_pred HHhhcchhhccccCCeEEC--CC-CCHHHHHHHHHhcCCeEEEEEECCEEEEEEEHHHhhcC---CCCCCHHHHccCCce
Confidence 21 1 0 0111222 12 234455666666676655543211 1100112233210 000000000000000
Q ss_pred cccc-ccchhhHHHhhhc-------c--Ccc----ccHHHHHhhcCC-CE-------EEE---ec--CCHHHHHHHHHcC
Q 017718 191 KMDE-ANDSGLAAYVAGQ-------I--DRS----LSWKWLQTITKL-PI-------LVK---GV--LTAEDARIAVQAG 243 (367)
Q Consensus 191 ~~~~-~~~~~~~~~~~~~-------~--d~~----~~~~~l~~~~~~-Pv-------~vK---~v--~~~~~a~~~~~~G 243 (367)
.... .......+.+... . +.. ++...+.+.... |. .+. ++ ...+-++.+.++|
T Consensus 158 tv~~~~sL~eAl~lM~~~~i~~LPVVD~~g~LvGIIT~~DLl~~~~~~~~~d~~grl~Vgaav~~~~~~~~ra~~Lv~aG 237 (475)
T TIGR01303 158 TAPADTEPRKAFDLLEHAPRDVAPLVDADGTLAGILTRTGALRATIYTPATDAAGRLRIGAAVGINGDVGGKAKALLDAG 237 (475)
T ss_pred EeCCCCcHHHHHHHHHHcCCCEEEEEcCCCeEEEEEEHHHHHHHHhCCchhhhccCceehheeeeCccHHHHHHHHHHhC
Confidence 0000 0000000000000 0 000 122211111111 21 111 11 1135588999999
Q ss_pred CcEEEEcCCCCCCCCCccchHHHHHHHHHHhcCCCcEEEecCCCCHHHHHHHHHcCCCEEEec
Q 017718 244 AAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFIG 306 (367)
Q Consensus 244 ~d~i~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~~~via~GGI~~~~dv~kal~lGAd~V~ig 306 (367)
+|.|++..+-|+. ....+.+.+|++... ++|||+ |.+.|.+.+..++.+|||+|-+|
T Consensus 238 Vd~i~~D~a~g~~----~~~~~~i~~i~~~~~-~~~vi~-g~~~t~~~~~~l~~~G~d~i~vg 294 (475)
T TIGR01303 238 VDVLVIDTAHGHQ----VKMISAIKAVRALDL-GVPIVA-GNVVSAEGVRDLLEAGANIIKVG 294 (475)
T ss_pred CCEEEEeCCCCCc----HHHHHHHHHHHHHCC-CCeEEE-eccCCHHHHHHHHHhCCCEEEEC
Confidence 9999997633432 346677888877543 689999 77999999999999999998755
|
This model represents a family of proteins, often annotated as a putative IMP dehydrogenase, related to IMP dehydrogenase and GMP reductase and restricted to the high GC Gram-positive bacteria. All species in which a member is found so far (Corynebacterium glutamicum, Mycobacterium tuberculosis, Streptomyces coelicolor, etc.) also have IMP dehydrogenase as described by TIGRFAMs entry TIGR01302. |
| >TIGR00674 dapA dihydrodipicolinate synthase | Back alignment and domain information |
|---|
Probab=94.82 E-value=0.23 Score=47.56 Aligned_cols=92 Identities=20% Similarity=0.336 Sum_probs=57.6
Q ss_pred HHHHHHcCCcEEEEcCCCCCCCCCccc-hHHHHHHHHHHhcCCCcEEEecCCCCHHHHHH----HHHcCCCEEEechHHH
Q 017718 236 ARIAVQAGAAGIIVSNHGARQLDYVPA-TIMALEEVVKATQGRIPVFLDGGVRRGTDVFK----ALALGASGIFIGRPVV 310 (367)
Q Consensus 236 a~~~~~~G~d~i~vs~~gg~~~~~~~~-~~~~l~~i~~~~~~~~~via~GGI~~~~dv~k----al~lGAd~V~ig~~~l 310 (367)
+..+.+.|+++|.+.++.|-...-... ..+.+..+++.+.+++||++.=|-.+-.++++ +-.+|||+|++..|+.
T Consensus 25 i~~l~~~Gv~Gi~~~GstGE~~~Ls~~Er~~~~~~~~~~~~~~~~vi~gv~~~s~~~~i~~a~~a~~~Gad~v~v~pP~y 104 (285)
T TIGR00674 25 IDFQIENGTDAIVVVGTTGESPTLSHEEHKKVIEFVVDLVNGRVPVIAGTGSNATEEAISLTKFAEDVGADGFLVVTPYY 104 (285)
T ss_pred HHHHHHcCCCEEEECccCcccccCCHHHHHHHHHHHHHHhCCCCeEEEeCCCccHHHHHHHHHHHHHcCCCEEEEcCCcC
Confidence 456778999999997655432211222 23445556666677899998555555666553 3347999999999987
Q ss_pred HHhhccChHHHHHHHHHHHH
Q 017718 311 YSLAAEGEKGVRRVLEMLRE 330 (367)
Q Consensus 311 ~~l~~~G~~~v~~~i~~l~~ 330 (367)
+.. .++++.+++..+.+
T Consensus 105 ~~~---~~~~i~~~~~~i~~ 121 (285)
T TIGR00674 105 NKP---TQEGLYQHFKAIAE 121 (285)
T ss_pred CCC---CHHHHHHHHHHHHh
Confidence 642 34555455444433
|
Dihydrodipicolinate synthase is a homotetrameric enzyme of lysine biosynthesis. E. coli has several paralogs closely related to dihydrodipicoline synthase (DapA), as well as the more distant N-acetylneuraminate lyase. In Pyrococcus horikoshii, the bidirectional best hit with E. coli is to an uncharacterized paralog of DapA, not DapA itself, and it is omitted from the seed. The putative members from the Chlamydias (pathogens with a parasitic metabolism) are easily the most divergent members of the multiple alignment. |
| >PRK06852 aldolase; Validated | Back alignment and domain information |
|---|
Probab=94.79 E-value=0.17 Score=48.90 Aligned_cols=88 Identities=25% Similarity=0.274 Sum_probs=57.6
Q ss_pred hhcCCCEEE----Ee--c---CCH----HHHHHHHHcCCcEEEEcCCCCCCCCCccchHHHHHHHHHHhcCCCcEEEecC
Q 017718 219 TITKLPILV----KG--V---LTA----EDARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGG 285 (367)
Q Consensus 219 ~~~~~Pv~v----K~--v---~~~----~~a~~~~~~G~d~i~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~~~via~GG 285 (367)
+.|++|+++ ++ + .++ ..++.+.+.|||.|-+--.+ +.+....+.+.++.+.. +++||+..||
T Consensus 164 ~~~GlPll~~~yprG~~i~~~~~~~~ia~aaRiaaELGADIVKv~y~~----~~~~g~~e~f~~vv~~~-g~vpVviaGG 238 (304)
T PRK06852 164 HKHGLIAVLWIYPRGKAVKDEKDPHLIAGAAGVAACLGADFVKVNYPK----KEGANPAELFKEAVLAA-GRTKVVCAGG 238 (304)
T ss_pred HHhCCcEEEEeeccCcccCCCccHHHHHHHHHHHHHHcCCEEEecCCC----cCCCCCHHHHHHHHHhC-CCCcEEEeCC
Confidence 457999876 11 1 121 23788999999999984321 00112346666776654 3799999999
Q ss_pred CCCH-HHHH----HHHH-cCCCEEEechHHHH
Q 017718 286 VRRG-TDVF----KALA-LGASGIFIGRPVVY 311 (367)
Q Consensus 286 I~~~-~dv~----kal~-lGAd~V~ig~~~l~ 311 (367)
=... +|++ .++. .||.+|.+||=+..
T Consensus 239 ~k~~~~e~L~~v~~ai~~aGa~Gv~~GRNIfQ 270 (304)
T PRK06852 239 SSTDPEEFLKQLYEQIHISGASGNATGRNIHQ 270 (304)
T ss_pred CCCCHHHHHHHHHHHHHHcCCceeeechhhhc
Confidence 8853 3444 4666 89999999995543
|
|
| >PRK13306 ulaD 3-keto-L-gulonate-6-phosphate decarboxylase; Provisional | Back alignment and domain information |
|---|
Probab=94.79 E-value=0.091 Score=48.42 Aligned_cols=97 Identities=19% Similarity=0.136 Sum_probs=54.1
Q ss_pred CCHHHHHHHHHcCCcEEEEcCCCCCCCCCccchHHHHHHHHHHhcCCCcEEEecCCCCHHHHHHHHHcCCCEEEechHHH
Q 017718 231 LTAEDARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFIGRPVV 310 (367)
Q Consensus 231 ~~~~~a~~~~~~G~d~i~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~~~via~GGI~~~~dv~kal~lGAd~V~ig~~~l 310 (367)
.+.++++...+.|++-+++.-.---++++..-..+.+..+++..+.+..+.++|||+-.. +-+....|||.+.+|||+.
T Consensus 117 ~~~~~l~~~~~~~~~~~vl~~a~~~~~~G~v~s~~~~~~ir~~~~~~~~i~V~gGI~~~~-~~~~~~~~ad~~VvGr~I~ 195 (216)
T PRK13306 117 WTWEQAQQWRDAGISQVIYHRSRDAQLAGVAWGEKDLNKVKKLSDMGFKVSVTGGLVVED-LKLFKGIPVKTFIAGRAIR 195 (216)
T ss_pred CCHHHHHHHHcCChhhhhhhhhhhhhhcCCCCCHHHHHHHHHHhcCCCeEEEcCCCCHhh-HHHHhcCCCCEEEECCccc
Confidence 456666666676766555521110123343333344445544443355699999998432 1123345999999999954
Q ss_pred HHhhccChHHHHHHHHHHHHHHHH
Q 017718 311 YSLAAEGEKGVRRVLEMLREEFEL 334 (367)
Q Consensus 311 ~~l~~~G~~~v~~~i~~l~~el~~ 334 (367)
.+ +.....++.++++++.
T Consensus 196 ~a------~dp~~a~~~i~~~i~~ 213 (216)
T PRK13306 196 GA------ADPAAAARAFKDEIAK 213 (216)
T ss_pred CC------CCHHHHHHHHHHHHHh
Confidence 22 1233466667666643
|
|
| >cd00954 NAL N-Acetylneuraminic acid aldolase, also called N-acetylneuraminate lyase (NAL), which catalyses the reversible aldol reaction of N-acetyl-D-mannosamine and pyruvate to give N-acetyl-D-neuraminic acid (D-sialic acid) | Back alignment and domain information |
|---|
Probab=94.76 E-value=0.21 Score=47.88 Aligned_cols=92 Identities=15% Similarity=0.194 Sum_probs=57.0
Q ss_pred HHHHHHc-CCcEEEEcCCCCCCCCCcc-chHHHHHHHHHHhcCCCcEEEecCCCCHHHHHH----HHHcCCCEEEechHH
Q 017718 236 ARIAVQA-GAAGIIVSNHGARQLDYVP-ATIMALEEVVKATQGRIPVFLDGGVRRGTDVFK----ALALGASGIFIGRPV 309 (367)
Q Consensus 236 a~~~~~~-G~d~i~vs~~gg~~~~~~~-~~~~~l~~i~~~~~~~~~via~GGI~~~~dv~k----al~lGAd~V~ig~~~ 309 (367)
++.+.+. |+++|.+.++.|-...-.. -..+.+..+++.+.+++|||+.=|-.+-.++++ +..+|||+|++-.|+
T Consensus 27 i~~l~~~~Gv~gi~~~GstGE~~~Lt~~Er~~~~~~~~~~~~~~~~viagv~~~~~~~ai~~a~~a~~~Gad~v~~~~P~ 106 (288)
T cd00954 27 VDYLIEKQGVDGLYVNGSTGEGFLLSVEERKQIAEIVAEAAKGKVTLIAHVGSLNLKESQELAKHAEELGYDAISAITPF 106 (288)
T ss_pred HHHHHhcCCCCEEEECcCCcCcccCCHHHHHHHHHHHHHHhCCCCeEEeccCCCCHHHHHHHHHHHHHcCCCEEEEeCCC
Confidence 4667788 9999999776543211111 133455556666677899998433344444443 345899999999998
Q ss_pred HHHhhccChHHHHHHHHHHHH
Q 017718 310 VYSLAAEGEKGVRRVLEMLRE 330 (367)
Q Consensus 310 l~~l~~~G~~~v~~~i~~l~~ 330 (367)
.+.. .++++.++++.+.+
T Consensus 107 y~~~---~~~~i~~~~~~v~~ 124 (288)
T cd00954 107 YYKF---SFEEIKDYYREIIA 124 (288)
T ss_pred CCCC---CHHHHHHHHHHHHH
Confidence 7642 34555555555443
|
It has a widespread application as biocatalyst for the synthesis of sialic acid and its derivatives. This enzyme has been shown to be quite specific for pyruvate as the donor, but flexible to a variety of D- and, to some extent, L-hexoses and pentoses as acceptor substrates. NAL is member of dihydrodipicolinate synthase family that comprises several pyruvate-dependent class I aldolases. |
| >cd00950 DHDPS Dihydrodipicolinate synthase (DHDPS) is a key enzyme in lysine biosynthesis | Back alignment and domain information |
|---|
Probab=94.75 E-value=0.24 Score=47.23 Aligned_cols=92 Identities=20% Similarity=0.360 Sum_probs=56.7
Q ss_pred HHHHHHcCCcEEEEcCCCCCCCCCccc-hHHHHHHHHHHhcCCCcEEEecCCCCHHHHHH----HHHcCCCEEEechHHH
Q 017718 236 ARIAVQAGAAGIIVSNHGARQLDYVPA-TIMALEEVVKATQGRIPVFLDGGVRRGTDVFK----ALALGASGIFIGRPVV 310 (367)
Q Consensus 236 a~~~~~~G~d~i~vs~~gg~~~~~~~~-~~~~l~~i~~~~~~~~~via~GGI~~~~dv~k----al~lGAd~V~ig~~~l 310 (367)
++.+.+.|++++.+.++.|-...-... ..+.+..+++.+.+++||++-=|-.+..++++ +-.+|||+|++..|..
T Consensus 27 i~~l~~~Gv~gl~v~GstGE~~~lt~~Er~~l~~~~~~~~~~~~~vi~gv~~~~~~~~~~~a~~a~~~G~d~v~~~~P~~ 106 (284)
T cd00950 27 IEFQIENGTDGLVVCGTTGESPTLSDEEHEAVIEAVVEAVNGRVPVIAGTGSNNTAEAIELTKRAEKAGADAALVVTPYY 106 (284)
T ss_pred HHHHHHcCCCEEEECCCCcchhhCCHHHHHHHHHHHHHHhCCCCcEEeccCCccHHHHHHHHHHHHHcCCCEEEEccccc
Confidence 466788999999997654422111111 23345555666667899887444445566554 3347999999999987
Q ss_pred HHhhccChHHHHHHHHHHHH
Q 017718 311 YSLAAEGEKGVRRVLEMLRE 330 (367)
Q Consensus 311 ~~l~~~G~~~v~~~i~~l~~ 330 (367)
+.. .++++.++++.+.+
T Consensus 107 ~~~---~~~~l~~~~~~ia~ 123 (284)
T cd00950 107 NKP---SQEGLYAHFKAIAE 123 (284)
T ss_pred CCC---CHHHHHHHHHHHHh
Confidence 642 34555555544433
|
It catalyzes the aldol condensation of L-aspartate-beta- semialdehyde and pyruvate to dihydropicolinic acid via a Schiff base formation between pyruvate and a lysine residue. The functional enzyme is a homotetramer consisting of a dimer of dimers. DHDPS is member of dihydrodipicolinate synthase family that comprises several pyruvate-dependent class I aldolases that use the same catalytic step to catalyze different reactions in different pathways. |
| >TIGR01305 GMP_reduct_1 guanosine monophosphate reductase, eukaryotic | Back alignment and domain information |
|---|
Probab=94.75 E-value=0.14 Score=49.92 Aligned_cols=68 Identities=18% Similarity=0.108 Sum_probs=50.9
Q ss_pred HHHHHHHHHcC--CcEEEEcCCCCCCCCCccchHHHHHHHHHHhcCCCcEEEecCCCCHHHHHHHHHcCCCEEEec
Q 017718 233 AEDARIAVQAG--AAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFIG 306 (367)
Q Consensus 233 ~~~a~~~~~~G--~d~i~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~~~via~GGI~~~~dv~kal~lGAd~V~ig 306 (367)
.+-++.+.++| +|.|++.-+-|+ .....+.++++++..+ . +.+..|.|-+++++..++.+|||+|-+|
T Consensus 109 ~er~~~L~~a~~~~d~iviD~AhGh----s~~~i~~ik~ir~~~p-~-~~viaGNV~T~e~a~~Li~aGAD~ikVg 178 (343)
T TIGR01305 109 LEKMTSILEAVPQLKFICLDVANGY----SEHFVEFVKLVREAFP-E-HTIMAGNVVTGEMVEELILSGADIVKVG 178 (343)
T ss_pred HHHHHHHHhcCCCCCEEEEECCCCc----HHHHHHHHHHHHhhCC-C-CeEEEecccCHHHHHHHHHcCCCEEEEc
Confidence 34577888885 999999753332 1345677888877663 3 4555688999999999999999999777
|
A deep split separates two families of GMP reductase. This family includes both eukaryotic and some proteobacterial sequences, while the other family contains other bacterial sequences. |
| >TIGR01858 tag_bisphos_ald class II aldolase, tagatose bisphosphate family | Back alignment and domain information |
|---|
Probab=94.73 E-value=4.2 Score=39.05 Aligned_cols=109 Identities=17% Similarity=0.272 Sum_probs=74.2
Q ss_pred CCHHHHHHHH-HcCCcEEEEcC---CCCCCCCCccchHHHHHHHHHHhcCCCcEEEecCCCC-HHHHHHHHHcCCCEEEe
Q 017718 231 LTAEDARIAV-QAGAAGIIVSN---HGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRR-GTDVFKALALGASGIFI 305 (367)
Q Consensus 231 ~~~~~a~~~~-~~G~d~i~vs~---~gg~~~~~~~~~~~~l~~i~~~~~~~~~via~GGI~~-~~dv~kal~lGAd~V~i 305 (367)
.++++|+... +.|+|.+-++- ||-+.. ...-.++.|.+|++.+ ++|+..=||=.. -+++.|++.+|-.-|=+
T Consensus 153 T~peea~~Fv~~TgvD~LAvaiGt~HG~yk~-~p~Ldf~~L~~I~~~~--~iPLVlHGgSG~~~e~~~~ai~~Gi~KiNi 229 (282)
T TIGR01858 153 TDPQEAKEFVEATGVDSLAVAIGTAHGLYKK-TPKLDFDRLAEIREVV--DVPLVLHGASDVPDEDVRRTIELGICKVNV 229 (282)
T ss_pred CCHHHHHHHHHHHCcCEEecccCccccCcCC-CCccCHHHHHHHHHHh--CCCeEEecCCCCCHHHHHHHHHcCCeEEEe
Confidence 5778877655 69999999874 554321 1123678899999887 789988775544 46677889999999999
Q ss_pred chHHHHHhhc-------cC------hHHHHHHHHHHHHHHHHHHHHhCCC
Q 017718 306 GRPVVYSLAA-------EG------EKGVRRVLEMLREEFELAMALSGCR 342 (367)
Q Consensus 306 g~~~l~~l~~-------~G------~~~v~~~i~~l~~el~~~m~~~G~~ 342 (367)
+|.+..+... .. ..-.....+.+++.++..|+.+|..
T Consensus 230 ~T~l~~a~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~v~~~i~~~gs~ 279 (282)
T TIGR01858 230 ATELKIAFSGAVKAYFAENPQANDPRYYMRPGKDAMKKVVRNKINVCGSA 279 (282)
T ss_pred CcHHHHHHHHHHHHHHHhCCCcCCHHHHHHHHHHHHHHHHHHHHHHhCCC
Confidence 9977654211 01 0123344566777777888888754
|
This model describes tagatose-1,6-bisphosphate aldolases, and perhaps other closely related class II aldolases. This tetrameric, Zn2+-dependent enzyme is related to the class II fructose bisphosphate aldolase; fructose 1,6-bisphosphate and tagatose 1,6 bisphosphate differ only in chirality at C4. |
| >PRK07565 dihydroorotate dehydrogenase 2; Reviewed | Back alignment and domain information |
|---|
Probab=94.73 E-value=0.32 Score=47.74 Aligned_cols=90 Identities=21% Similarity=0.206 Sum_probs=57.5
Q ss_pred HHHhhcCCCEEEEecC-CH----HHHHHHHHcCCcEEEEcC---CCCCCCCCcc---chHHHHHHHHHHhcCCCcEEEe-
Q 017718 216 WLQTITKLPILVKGVL-TA----EDARIAVQAGAAGIIVSN---HGARQLDYVP---ATIMALEEVVKATQGRIPVFLD- 283 (367)
Q Consensus 216 ~l~~~~~~Pv~vK~v~-~~----~~a~~~~~~G~d~i~vs~---~gg~~~~~~~---~~~~~l~~i~~~~~~~~~via~- 283 (367)
.+++..++||+++... +. +.++.+.++|+|+|.+.- ++.....+.. ...+.+.++++.+ ++||++-
T Consensus 95 ~~~~~~~~pvi~sI~g~~~~e~~~~a~~~~~agad~ielN~scpp~~~~~~g~~~~~~~~eil~~v~~~~--~iPV~vKl 172 (334)
T PRK07565 95 RAKEAVDIPVIASLNGSSAGGWVDYARQIEQAGADALELNIYYLPTDPDISGAEVEQRYLDILRAVKSAV--SIPVAVKL 172 (334)
T ss_pred HHHHhcCCcEEEEeccCCHHHHHHHHHHHHHcCCCEEEEeCCCCCCCCCCccccHHHHHHHHHHHHHhcc--CCcEEEEe
Confidence 3445557999999863 33 447788899999999831 1111111111 1335556665554 6899984
Q ss_pred -cCCCCHHHHHHHHH-cCCCEEEech
Q 017718 284 -GGVRRGTDVFKALA-LGASGIFIGR 307 (367)
Q Consensus 284 -GGI~~~~dv~kal~-lGAd~V~ig~ 307 (367)
+++.+..++++++. .|+|+|.+-.
T Consensus 173 ~p~~~~~~~~a~~l~~~G~dgI~~~n 198 (334)
T PRK07565 173 SPYFSNLANMAKRLDAAGADGLVLFN 198 (334)
T ss_pred CCCchhHHHHHHHHHHcCCCeEEEEC
Confidence 45556778888775 8999987743
|
|
| >PRK07114 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional | Back alignment and domain information |
|---|
Probab=94.72 E-value=0.15 Score=47.13 Aligned_cols=69 Identities=17% Similarity=0.130 Sum_probs=50.0
Q ss_pred CCEEEEecCCHHHHHHHHHcCCcEEEEcCCCCCCCCCccchHHHHHHHHHHhcCCCcEEEecCCCCHHHHHHHHHcCCCE
Q 017718 223 LPILVKGVLTAEDARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASG 302 (367)
Q Consensus 223 ~Pv~vK~v~~~~~a~~~~~~G~d~i~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~~~via~GGI~~~~dv~kal~lGAd~ 302 (367)
+-|.+..|.+.++++.+.++|+++|+--+ ...+++..+.+ . ++|++ =|+.|+.++..++.+||+.
T Consensus 71 ~~vGaGTVl~~e~a~~a~~aGA~FiVsP~----------~~~~v~~~~~~-~--~i~~i--PG~~TpsEi~~A~~~Ga~~ 135 (222)
T PRK07114 71 MILGVGSIVDAATAALYIQLGANFIVTPL----------FNPDIAKVCNR-R--KVPYS--PGCGSLSEIGYAEELGCEI 135 (222)
T ss_pred eEEeeEeCcCHHHHHHHHHcCCCEEECCC----------CCHHHHHHHHH-c--CCCEe--CCCCCHHHHHHHHHCCCCE
Confidence 55777778999999999999999986421 12333333322 2 45554 5899999999999999998
Q ss_pred EEec
Q 017718 303 IFIG 306 (367)
Q Consensus 303 V~ig 306 (367)
|=+-
T Consensus 136 vKlF 139 (222)
T PRK07114 136 VKLF 139 (222)
T ss_pred EEEC
Confidence 7543
|
|
| >COG0157 NadC Nicotinate-nucleotide pyrophosphorylase [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=94.71 E-value=0.31 Score=46.33 Aligned_cols=70 Identities=29% Similarity=0.323 Sum_probs=55.4
Q ss_pred ecCCHHHHHHHHHcCCcEEEEcCCCCCCCCCccchHHHHHHHHHH--hcCCCcEEEecCCCCHHHHHHHHHcCCCEEEec
Q 017718 229 GVLTAEDARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKA--TQGRIPVFLDGGVRRGTDVFKALALGASGIFIG 306 (367)
Q Consensus 229 ~v~~~~~a~~~~~~G~d~i~vs~~gg~~~~~~~~~~~~l~~i~~~--~~~~~~via~GGI~~~~dv~kal~lGAd~V~ig 306 (367)
.+-+.++++.+.++|+|.|.+.|- +.+.+.++.+. .++++-+=++||| +.+.+..+..+|.|.+.+|
T Consensus 194 Evesle~~~eAl~agaDiImLDNm----------~~e~~~~av~~l~~~~~~~lEaSGgI-t~~ni~~yA~tGVD~IS~g 262 (280)
T COG0157 194 EVESLEEAEEALEAGADIIMLDNM----------SPEELKEAVKLLGLAGRALLEASGGI-TLENIREYAETGVDVISVG 262 (280)
T ss_pred EcCCHHHHHHHHHcCCCEEEecCC----------CHHHHHHHHHHhccCCceEEEEeCCC-CHHHHHHHhhcCCCEEEeC
Confidence 358999999999999999999882 23445555555 4457888889998 5678888889999999999
Q ss_pred hHH
Q 017718 307 RPV 309 (367)
Q Consensus 307 ~~~ 309 (367)
.+.
T Consensus 263 alt 265 (280)
T COG0157 263 ALT 265 (280)
T ss_pred ccc
Confidence 754
|
|
| >PRK07709 fructose-bisphosphate aldolase; Provisional | Back alignment and domain information |
|---|
Probab=94.68 E-value=0.84 Score=43.88 Aligned_cols=109 Identities=18% Similarity=0.213 Sum_probs=76.2
Q ss_pred CCHHHHHHHH-HcCCcEEEEcC---CCCCCCCCccchHHHHHHHHHHhcCCCcEEEecCCCCH-HHHHHHHHcCCCEEEe
Q 017718 231 LTAEDARIAV-QAGAAGIIVSN---HGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRG-TDVFKALALGASGIFI 305 (367)
Q Consensus 231 ~~~~~a~~~~-~~G~d~i~vs~---~gg~~~~~~~~~~~~l~~i~~~~~~~~~via~GGI~~~-~dv~kal~lGAd~V~i 305 (367)
.++++|+... +.|+|.+-++. ||-+.. ...-.++.|.+|.+.+ ++|+..=||=..+ +++.|++.+|..-|=+
T Consensus 156 T~peeA~~Fv~~TgvD~LAvaiGt~HG~Y~~-~p~L~~~~L~~I~~~~--~iPLVLHGgSG~~~e~~~~ai~~Gi~KiNi 232 (285)
T PRK07709 156 ADPAECKHLVEATGIDCLAPALGSVHGPYKG-EPNLGFAEMEQVRDFT--GVPLVLHGGTGIPTADIEKAISLGTSKINV 232 (285)
T ss_pred CCHHHHHHHHHHhCCCEEEEeecccccCcCC-CCccCHHHHHHHHHHH--CCCEEEeCCCCCCHHHHHHHHHcCCeEEEe
Confidence 5788887765 58999999874 554321 1123678899998887 7999998877666 6788899999999999
Q ss_pred chHHHHHhhc-------cC------hHHHHHHHHHHHHHHHHHHHHhCCC
Q 017718 306 GRPVVYSLAA-------EG------EKGVRRVLEMLREEFELAMALSGCR 342 (367)
Q Consensus 306 g~~~l~~l~~-------~G------~~~v~~~i~~l~~el~~~m~~~G~~ 342 (367)
+|-+-.+... .. ..-.....+.+++.++..|+.+|..
T Consensus 233 ~T~l~~a~~~~~~~~~~~~~~~~d~~~~~~~~~~a~~~~v~~~i~~~gs~ 282 (285)
T PRK07709 233 NTENQIEFTKAVREVLNKDQEVYDPRKFIGPGRDAIKATVIGKIREFGSN 282 (285)
T ss_pred ChHHHHHHHHHHHHHHHhCCCcCCHHHHHHHHHHHHHHHHHHHHHHhCCC
Confidence 9976543210 00 1123344566777788888888764
|
|
| >COG0329 DapA Dihydrodipicolinate synthase/N-acetylneuraminate lyase [Amino acid transport and metabolism / Cell envelope biogenesis, outer membrane] | Back alignment and domain information |
|---|
Probab=94.65 E-value=4.5 Score=39.08 Aligned_cols=182 Identities=20% Similarity=0.231 Sum_probs=107.3
Q ss_pred cceEeCcccchhccCChhhHHHHHHHHHcCCceee--c---CCCCCCHHHHH-------hhC-C-CceEEEEeecCCHHH
Q 017718 72 MPIMIAPTAMQKMAHPEGEYATARAASAAGTIMTL--S---SWSTSSVEEVA-------STG-P-GIRFFQLYVYKDRNV 137 (367)
Q Consensus 72 ~Pi~iAPm~~~~l~~~~~e~~~a~aa~~~G~~~~v--s---~~~~~~~e~i~-------~~~-~-~~~~~QLy~~~d~~~ 137 (367)
.|.++.|+.-.+-.+.++-..+.+-..+.|+..++ | +..+.+.||-. +.. . -|...+.- ..+-+.
T Consensus 9 i~a~vTPF~~dg~vD~~a~~~lv~~li~~Gv~gi~~~GttGE~~~Ls~eEr~~v~~~~v~~~~grvpviaG~g-~~~t~e 87 (299)
T COG0329 9 IPALVTPFDEDGSVDEEALRRLVEFLIAAGVDGLVVLGTTGESPTLTLEERKEVLEAVVEAVGGRVPVIAGVG-SNSTAE 87 (299)
T ss_pred eeccccCCCCCCCcCHHHHHHHHHHHHHcCCCEEEECCCCccchhcCHHHHHHHHHHHHHHHCCCCcEEEecC-CCcHHH
Confidence 56677887643334444455677777788866443 3 33456776632 222 2 34666665 345666
Q ss_pred HHHHHHHHHHcCCcEEEEecCCCCCCchhHHhhhhcCCCCccccccccccccCccccccchhhHHHhhhccCccccHHHH
Q 017718 138 VAQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLTLKNFQGLDLGKMDEANDSGLAAYVAGQIDRSLSWKWL 217 (367)
Q Consensus 138 ~~~~l~ra~~~G~~ai~itvd~p~~g~r~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~l 217 (367)
..++.+.|++.|++++.+. .|. +...+ ..++.+ .++++
T Consensus 88 ai~lak~a~~~Gad~il~v--~Py-----------------Y~k~~-------------~~gl~~----------hf~~i 125 (299)
T COG0329 88 AIELAKHAEKLGADGILVV--PPY-----------------YNKPS-------------QEGLYA----------HFKAI 125 (299)
T ss_pred HHHHHHHHHhcCCCEEEEe--CCC-----------------CcCCC-------------hHHHHH----------HHHHH
Confidence 6789999999999999872 222 11100 001111 23477
Q ss_pred HhhcCCCEEEEec-------CCHHHHHHHHHcCCcEEEEcCCCCCCCCCccchHHHHHHHHHHhcCCCcEEEecCCCCHH
Q 017718 218 QTITKLPILVKGV-------LTAEDARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGT 290 (367)
Q Consensus 218 ~~~~~~Pv~vK~v-------~~~~~a~~~~~~G~d~i~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~~~via~GGI~~~~ 290 (367)
.+.+++|+++=.+ .+++...++.+. -..+-+=.. ...++.+.++....+.+--++.+| .-+
T Consensus 126 a~a~~lPvilYN~P~~tg~~l~~e~i~~la~~-~nivgiKd~--------~gd~~~~~~~~~~~~~~~f~v~~G---~d~ 193 (299)
T COG0329 126 AEAVDLPVILYNIPSRTGVDLSPETIARLAEH-PNIVGVKDS--------SGDLDRLEEIIAALGDRDFIVLSG---DDE 193 (299)
T ss_pred HHhcCCCEEEEeCccccCCCCCHHHHHHHhcC-CCEEEEEeC--------CcCHHHHHHHHHhcCccCeeEEeC---chH
Confidence 7788999998886 467888888772 222223111 125666666665553321144445 356
Q ss_pred HHHHHHHcCCCEEEechH
Q 017718 291 DVFKALALGASGIFIGRP 308 (367)
Q Consensus 291 dv~kal~lGAd~V~ig~~ 308 (367)
..+-.+.+|++++..+..
T Consensus 194 ~~~~~~~~G~~G~is~~~ 211 (299)
T COG0329 194 LALPALLLGADGVISVTA 211 (299)
T ss_pred HHHHHHhCCCCeEEeccc
Confidence 667888899999998874
|
|
| >PF00701 DHDPS: Dihydrodipicolinate synthetase family; InterPro: IPR002220 Dihydropicolinate synthase (DHDPS) is the key enzyme in lysine biosynthesis via the diaminopimelate pathway of prokaryotes, some phycomycetes and higher plants | Back alignment and domain information |
|---|
Probab=94.63 E-value=0.16 Score=48.69 Aligned_cols=90 Identities=19% Similarity=0.327 Sum_probs=55.1
Q ss_pred HHHHHHcCCcEEEEcCCCCCCCCCccc-hHHHHHHHHHHhcCCCcEEEecCCCCHHHHHHH----HHcCCCEEEechHHH
Q 017718 236 ARIAVQAGAAGIIVSNHGARQLDYVPA-TIMALEEVVKATQGRIPVFLDGGVRRGTDVFKA----LALGASGIFIGRPVV 310 (367)
Q Consensus 236 a~~~~~~G~d~i~vs~~gg~~~~~~~~-~~~~l~~i~~~~~~~~~via~GGI~~~~dv~ka----l~lGAd~V~ig~~~l 310 (367)
++.+.+.|+++|.+.++.|-...-... ..+.+..+++.+++++|||+.=|=.+-.++++. -.+|||++++..|+.
T Consensus 28 i~~l~~~Gv~gl~~~GstGE~~~Lt~~Er~~l~~~~~~~~~~~~~vi~gv~~~st~~~i~~a~~a~~~Gad~v~v~~P~~ 107 (289)
T PF00701_consen 28 IDFLIEAGVDGLVVLGSTGEFYSLTDEERKELLEIVVEAAAGRVPVIAGVGANSTEEAIELARHAQDAGADAVLVIPPYY 107 (289)
T ss_dssp HHHHHHTTSSEEEESSTTTTGGGS-HHHHHHHHHHHHHHHTTSSEEEEEEESSSHHHHHHHHHHHHHTT-SEEEEEESTS
T ss_pred HHHHHHcCCCEEEECCCCcccccCCHHHHHHHHHHHHHHccCceEEEecCcchhHHHHHHHHHHHhhcCceEEEEecccc
Confidence 567789999999997655422111111 234455556667778999985454455555533 347999999999986
Q ss_pred HHhhccChHHHHHHHHHH
Q 017718 311 YSLAAEGEKGVRRVLEML 328 (367)
Q Consensus 311 ~~l~~~G~~~v~~~i~~l 328 (367)
+.. .++++.++++.+
T Consensus 108 ~~~---s~~~l~~y~~~i 122 (289)
T PF00701_consen 108 FKP---SQEELIDYFRAI 122 (289)
T ss_dssp SSC---CHHHHHHHHHHH
T ss_pred ccc---hhhHHHHHHHHH
Confidence 632 344555454443
|
The enzyme catalyses the condensation of L-aspartate-beta- semialdehyde and pyruvate to dihydropicolinic acid via a ping-pong mechanism in which pyruvate binds to the enzyme by forming a Schiff-base with a lysine residue []. Three other proteins are structurally related to DHDPS and probably also act via a similar catalytic mechanism. These are Escherichia coli N-acetylneuraminate lyase (4.1.3.3 from EC) (gene nanA), which catalyzes the condensation of N-acetyl-D-mannosamine and pyruvate to form N-acetylneuraminate; Rhizobium meliloti (Sinorhizobium meliloti) protein mosA [], which is involved in the biosynthesis of the rhizopine 3-o-methyl-scyllo-inosamine; and E. coli hypothetical protein yjhH. The sequences of DHDPS from different sources are well-conserved. The structure takes the form of a homotetramer, in which 2 monomers are related by an approximate 2-fold symmetry []. Each monomer comprises 2 domains: an 8-fold alpha-/beta-barrel, and a C-terminal alpha-helical domain. The fold resembles that of N-acetylneuraminate lyase. The active site lysine is located in the barrel domain, and has access via 2 channels on the C-terminal side of the barrel.; GO: 0016829 lyase activity, 0008152 metabolic process; PDB: 3B4U_B 3S8H_A 3QZE_B 1XXX_F 3L21_F 3IRD_A 3A5F_B 3G0S_B 3DAQ_C 3UQN_A .... |
| >PRK05458 guanosine 5'-monophosphate oxidoreductase; Provisional | Back alignment and domain information |
|---|
Probab=94.61 E-value=0.16 Score=49.71 Aligned_cols=67 Identities=16% Similarity=0.113 Sum_probs=49.9
Q ss_pred HHHHHHHHcCC--cEEEEcCCCCCCCCCccchHHHHHHHHHHhcCCCcEEEecCCCCHHHHHHHHHcCCCEEEec
Q 017718 234 EDARIAVQAGA--AGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFIG 306 (367)
Q Consensus 234 ~~a~~~~~~G~--d~i~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~~~via~GGI~~~~dv~kal~lGAd~V~ig 306 (367)
+.+..+.++|+ |.|.+...-| ......+.+.++++..+ .+||++ |.|.|.+++..++.+|||++.+|
T Consensus 100 ~~~~~Lv~ag~~~d~i~iD~a~g----h~~~~~e~I~~ir~~~p-~~~vi~-g~V~t~e~a~~l~~aGad~i~vg 168 (326)
T PRK05458 100 DFVDQLAAEGLTPEYITIDIAHG----HSDSVINMIQHIKKHLP-ETFVIA-GNVGTPEAVRELENAGADATKVG 168 (326)
T ss_pred HHHHHHHhcCCCCCEEEEECCCC----chHHHHHHHHHHHhhCC-CCeEEE-EecCCHHHHHHHHHcCcCEEEEC
Confidence 55788899965 9999964222 22345667888877652 455555 67889999999999999999877
|
|
| >PRK09140 2-dehydro-3-deoxy-6-phosphogalactonate aldolase; Reviewed | Back alignment and domain information |
|---|
Probab=94.60 E-value=0.26 Score=45.07 Aligned_cols=75 Identities=25% Similarity=0.243 Sum_probs=52.9
Q ss_pred HHHhhcC--CCEEEEecCCHHHHHHHHHcCCcEEEEcCCCCCCCCCccchHHHHHHHHHHhcCCCcEEEecCCCCHHHHH
Q 017718 216 WLQTITK--LPILVKGVLTAEDARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVF 293 (367)
Q Consensus 216 ~l~~~~~--~Pv~vK~v~~~~~a~~~~~~G~d~i~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~~~via~GGI~~~~dv~ 293 (367)
.+++..+ +.|.+..+.+.++++.+.++|+|+++..+ ...+.+.. +... .++++. | +.|.+++.
T Consensus 54 ~l~~~~~~~~~iGaGTV~~~~~~~~a~~aGA~fivsp~----------~~~~v~~~-~~~~--~~~~~~-G-~~t~~E~~ 118 (206)
T PRK09140 54 ALVKALGDRALIGAGTVLSPEQVDRLADAGGRLIVTPN----------TDPEVIRR-AVAL--GMVVMP-G-VATPTEAF 118 (206)
T ss_pred HHHHHcCCCcEEeEEecCCHHHHHHHHHcCCCEEECCC----------CCHHHHHH-HHHC--CCcEEc-c-cCCHHHHH
Confidence 5666664 45666667899999999999999997621 12223322 2222 455444 3 99999999
Q ss_pred HHHHcCCCEEEe
Q 017718 294 KALALGASGIFI 305 (367)
Q Consensus 294 kal~lGAd~V~i 305 (367)
++..+|||.|.+
T Consensus 119 ~A~~~Gad~vk~ 130 (206)
T PRK09140 119 AALRAGAQALKL 130 (206)
T ss_pred HHHHcCCCEEEE
Confidence 999999999987
|
|
| >PRK13813 orotidine 5'-phosphate decarboxylase; Provisional | Back alignment and domain information |
|---|
Probab=94.56 E-value=0.11 Score=47.52 Aligned_cols=81 Identities=19% Similarity=0.339 Sum_probs=52.4
Q ss_pred HHHHHHcCCcEEEEcCCCCCCCCCccchHHHHHHHHHHhcCCCcEEEecCCCCHH-HHHHHHHcCCCEEEechHHHHHhh
Q 017718 236 ARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGT-DVFKALALGASGIFIGRPVVYSLA 314 (367)
Q Consensus 236 a~~~~~~G~d~i~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~~~via~GGI~~~~-dv~kal~lGAd~V~ig~~~l~~l~ 314 (367)
+..+.+.|+++..+.. ...+.+.++++..+..+.+ .+|||+... ++.+++..|||.+.+||+++.+
T Consensus 132 ~~m~~e~G~~g~~~~~----------~~~~~i~~l~~~~~~~~~i-vdgGI~~~g~~~~~~~~aGad~iV~Gr~I~~~-- 198 (215)
T PRK13813 132 AKLAQEAGAFGVVAPA----------TRPERVRYIRSRLGDELKI-ISPGIGAQGGKAADAIKAGADYVIVGRSIYNA-- 198 (215)
T ss_pred HHHHHHhCCCeEEECC----------CcchhHHHHHHhcCCCcEE-EeCCcCCCCCCHHHHHHcCCCEEEECcccCCC--
Confidence 4567788988876532 1234455565554333444 899999763 6778888999999999985431
Q ss_pred ccChHHHHHHHHHHHHHHH
Q 017718 315 AEGEKGVRRVLEMLREEFE 333 (367)
Q Consensus 315 ~~G~~~v~~~i~~l~~el~ 333 (367)
+ ...+.++.++++++
T Consensus 199 ---~-d~~~~~~~l~~~~~ 213 (215)
T PRK13813 199 ---A-DPREAAKAINEEIR 213 (215)
T ss_pred ---C-CHHHHHHHHHHHHh
Confidence 1 13455666666554
|
|
| >PRK05567 inosine 5'-monophosphate dehydrogenase; Reviewed | Back alignment and domain information |
|---|
Probab=94.53 E-value=0.17 Score=52.36 Aligned_cols=243 Identities=16% Similarity=0.208 Sum_probs=127.7
Q ss_pred ccccceeeccccC-CCCCCccceeEc-CeeeccceEeCcccchhccCChhhHHHHHHHHHcCCceeecCCCCCCHHHHHh
Q 017718 42 AFSRILFRPRILI-DVSKIDMNTTVL-GFKISMPIMIAPTAMQKMAHPEGEYATARAASAAGTIMTLSSWSTSSVEEVAS 119 (367)
Q Consensus 42 ~~~~i~l~pr~l~-~~~~vd~st~i~-g~~l~~Pi~iAPm~~~~l~~~~~e~~~a~aa~~~G~~~~vs~~~~~~~e~i~~ 119 (367)
.||++.|+|.... ..+++|++|.+- +..+..||+-|||...+ +..++.+.++.|..-++.. +++.++..+
T Consensus 10 t~ddv~l~p~~~~~~~~~~~~~t~l~~~~~~~~Piv~a~m~~vT------~~ela~ava~~GglG~i~~--~~~~e~~~~ 81 (486)
T PRK05567 10 TFDDVLLVPAHSEVLPNDVDLSTQLTKNIRLNIPLLSAAMDTVT------EARMAIAMAREGGIGVIHK--NMSIEEQAE 81 (486)
T ss_pred CccceEecccccCcCcccccccchhhhhcCcCcCEEeCCCCCcC------HHHHHHHHHhCCCCCEecC--CCCHHHHHH
Confidence 5999999997652 446789988764 57788999999997664 5677777788876666652 344554321
Q ss_pred h-------C----CCceEEEEeecCCHHHHHHHHHHHHHcCCcEEEEecCC--CCCCchhHHhhhhcCCCCccccccccc
Q 017718 120 T-------G----PGIRFFQLYVYKDRNVVAQLVRRAERAGFKAIALTVDT--PRLGRREADIKNRFTLPPFLTLKNFQG 186 (367)
Q Consensus 120 ~-------~----~~~~~~QLy~~~d~~~~~~~l~ra~~~G~~ai~itvd~--p~~g~r~~~~~~~~~~p~~~~~~~~~~ 186 (367)
. . ..+.+ +. ...-..++++...+.++..+.|.=+. ++.-...+|++....... ....+..
T Consensus 82 ~I~~vk~~~dim~~~~v~--i~---~~~tv~ea~~~m~~~~~~~lpVvd~~g~lvGiVt~~DL~~~~~~~~--~V~dim~ 154 (486)
T PRK05567 82 EVRKVKRSESGVVTDPVT--VT---PDTTLAEALALMARYGISGVPVVDENGKLVGIITNRDVRFETDLSQ--PVSEVMT 154 (486)
T ss_pred HHHHhhhhhhcccCCCeE--eC---CCCCHHHHHHHHHHhCCCEEEEEccCCEEEEEEEHHHhhhcccCCC--cHHHHcC
Confidence 1 1 01222 21 12234456666666777666553221 000011123221000000 0000000
Q ss_pred -cccCcccc-ccchhhHHHhhhcc---------Ccc----ccHHHHHhhc---------CCCEEEEecC-----CHHHHH
Q 017718 187 -LDLGKMDE-ANDSGLAAYVAGQI---------DRS----LSWKWLQTIT---------KLPILVKGVL-----TAEDAR 237 (367)
Q Consensus 187 -~~~~~~~~-~~~~~~~~~~~~~~---------d~~----~~~~~l~~~~---------~~Pv~vK~v~-----~~~~a~ 237 (367)
........ .........+.... +.. ++.+.+.+.. ...+.+...+ +.+.++
T Consensus 155 ~~~~v~v~~~~sl~eal~~m~~~~~~~lpVVDe~g~lvGiIT~~DLl~~~~~p~a~~d~~g~l~V~aai~~~~~~~e~a~ 234 (486)
T PRK05567 155 KERLVTVPEGTTLEEALELLHEHRIEKLPVVDDNGRLKGLITVKDIEKAEEFPNACKDEQGRLRVGAAVGVGADNEERAE 234 (486)
T ss_pred CCCCEEECCCCCHHHHHHHHHHcCCCEEEEEcCCCcEEEEEEhHHhhhhhhCCCcccccCCCEEEEeecccCcchHHHHH
Confidence 00000000 00000000000000 000 1222222111 1234444443 257789
Q ss_pred HHHHcCCcEEEEcC-CCCCCCCCccchHHHHHHHHHHhcCCCcEEEecCCCCHHHHHHHHHcCCCEEEec
Q 017718 238 IAVQAGAAGIIVSN-HGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFIG 306 (367)
Q Consensus 238 ~~~~~G~d~i~vs~-~gg~~~~~~~~~~~~l~~i~~~~~~~~~via~GGI~~~~dv~kal~lGAd~V~ig 306 (367)
.+.++|+|.|++.. ||. . ...++.+.++++..+ ++||++ |+|.|.+++..++.+|||+|-+|
T Consensus 235 ~L~~agvdvivvD~a~g~-~----~~vl~~i~~i~~~~p-~~~vi~-g~v~t~e~a~~l~~aGad~i~vg 297 (486)
T PRK05567 235 ALVEAGVDVLVVDTAHGH-S----EGVLDRVREIKAKYP-DVQIIA-GNVATAEAARALIEAGADAVKVG 297 (486)
T ss_pred HHHHhCCCEEEEECCCCc-c----hhHHHHHHHHHhhCC-CCCEEE-eccCCHHHHHHHHHcCCCEEEEC
Confidence 99999999998864 332 1 235566777766542 688888 99999999999999999999775
|
|
| >TIGR03249 KdgD 5-dehydro-4-deoxyglucarate dehydratase | Back alignment and domain information |
|---|
Probab=94.53 E-value=4.7 Score=38.75 Aligned_cols=185 Identities=15% Similarity=0.077 Sum_probs=103.3
Q ss_pred cceEeCcccchhccCChhhHHHHHHHHHcCCceee--c---CCCCCCHHHHH-------hhCC--CceEEEEeecCCHHH
Q 017718 72 MPIMIAPTAMQKMAHPEGEYATARAASAAGTIMTL--S---SWSTSSVEEVA-------STGP--GIRFFQLYVYKDRNV 137 (367)
Q Consensus 72 ~Pi~iAPm~~~~l~~~~~e~~~a~aa~~~G~~~~v--s---~~~~~~~e~i~-------~~~~--~~~~~QLy~~~d~~~ 137 (367)
.|.++.|+.-.+-.+.++-..+.+-+.+.|+...+ | ++.+.+.||-. +... -+.++++- .+-+.
T Consensus 10 ~~a~vTPf~~dg~iD~~~l~~li~~l~~~Gv~gi~v~GstGE~~~Lt~eEr~~v~~~~~~~~~g~~pvi~gv~--~~t~~ 87 (296)
T TIGR03249 10 LSFPVTPFDADGSFDEAAYRENIEWLLGYGLEALFAAGGTGEFFSLTPAEYEQVVEIAVSTAKGKVPVYTGVG--GNTSD 87 (296)
T ss_pred EEeeeCCcCCCCCcCHHHHHHHHHHHHhcCCCEEEECCCCcCcccCCHHHHHHHHHHHHHHhCCCCcEEEecC--ccHHH
Confidence 35667777433334444445777777788866443 3 33455666532 2222 46677764 34666
Q ss_pred HHHHHHHHHHcCCcEEEEecCCCCCCchhHHhhhhcCCCCccccccccccccCccccccchhhHHHhhhccCccccHHHH
Q 017718 138 VAQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLTLKNFQGLDLGKMDEANDSGLAAYVAGQIDRSLSWKWL 217 (367)
Q Consensus 138 ~~~~l~ra~~~G~~ai~itvd~p~~g~r~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~l 217 (367)
..++++.++++|++++.+.- |.. ...+ ..++.+ -++.+
T Consensus 88 ai~~a~~a~~~Gadav~~~p--P~y-----------------~~~s-------------~~~i~~----------~f~~v 125 (296)
T TIGR03249 88 AIEIARLAEKAGADGYLLLP--PYL-----------------INGE-------------QEGLYA----------HVEAV 125 (296)
T ss_pred HHHHHHHHHHhCCCEEEECC--CCC-----------------CCCC-------------HHHHHH----------HHHHH
Confidence 77888899999999998722 221 0000 000111 12366
Q ss_pred HhhcCCCEEEEec----CCHHHHHHHHH-c-CCcEEEEcCCCCCCCCCccchHHHHHHHHHHhcCCCcEEEecCCCCHHH
Q 017718 218 QTITKLPILVKGV----LTAEDARIAVQ-A-GAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTD 291 (367)
Q Consensus 218 ~~~~~~Pv~vK~v----~~~~~a~~~~~-~-G~d~i~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~~~via~GGI~~~~d 291 (367)
.+.+++||++=.. .+++...++.+ . .+-+|--+ ...+..+.++.+..++++.|+.-.+. ....
T Consensus 126 ~~a~~~pvilYn~~g~~l~~~~~~~La~~~~nvvgiKds----------~~d~~~~~~~~~~~~~~~~v~~G~~~-~d~~ 194 (296)
T TIGR03249 126 CESTDLGVIVYQRDNAVLNADTLERLADRCPNLVGFKDG----------IGDMEQMIEITQRLGDRLGYLGGMPT-AEVT 194 (296)
T ss_pred HhccCCCEEEEeCCCCCCCHHHHHHHHhhCCCEEEEEeC----------CCCHHHHHHHHHHcCCCeEEEeCCCc-chhh
Confidence 6677899887643 56787777765 3 23333322 12444455555555445544432111 2334
Q ss_pred HHHHHHcCCCEEEechHHHH
Q 017718 292 VFKALALGASGIFIGRPVVY 311 (367)
Q Consensus 292 v~kal~lGAd~V~ig~~~l~ 311 (367)
++..+.+||++++.|..-++
T Consensus 195 ~~~~~~~Ga~G~is~~~n~~ 214 (296)
T TIGR03249 195 APAYLPLGVTSYSSAIFNFI 214 (296)
T ss_pred HHHHHhCCCCEEEecHHHhh
Confidence 56778899999998875443
|
5-dehydro-4-deoxyglucarate dehydratase not only catalyzes the dehydration of the substrate (diol to ketone + water), but causes the decarboxylation of the intermediate product to yield 2-oxoglutarate semialdehyde (2,5-dioxopentanoate). The gene for the enzyme is usually observed in the vicinity of transporters and dehydratases handling D-galactarate and D-gluconate as well as aldehyde dehydrogenases which convert the product to alpha-ketoglutarate. |
| >COG1830 FbaB DhnA-type fructose-1,6-bisphosphate aldolase and related enzymes [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=94.49 E-value=0.64 Score=43.94 Aligned_cols=79 Identities=27% Similarity=0.461 Sum_probs=53.0
Q ss_pred HHHHHHcCCcEEEEcCCCCCCCCCccchHHHHHHHHHHhcCCCcEEEecCCCC-HHH-HH----HHHHcCCCEEEechHH
Q 017718 236 ARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRR-GTD-VF----KALALGASGIFIGRPV 309 (367)
Q Consensus 236 a~~~~~~G~d~i~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~~~via~GGI~~-~~d-v~----kal~lGAd~V~ig~~~ 309 (367)
++.+.+.|||.|-+.-.| ..+...++.+.+ .+||+.+||=.. .++ ++ .++..||.++.+||=+
T Consensus 172 aRlaaelGADIiK~~ytg---------~~e~F~~vv~~~--~vpVviaGG~k~~~~~~~l~~~~~ai~aGa~G~~~GRNi 240 (265)
T COG1830 172 ARLAAELGADIIKTKYTG---------DPESFRRVVAAC--GVPVVIAGGPKTETEREFLEMVTAAIEAGAMGVAVGRNI 240 (265)
T ss_pred HHHHHHhcCCeEeecCCC---------ChHHHHHHHHhC--CCCEEEeCCCCCCChHHHHHHHHHHHHccCcchhhhhhh
Confidence 678999999999874322 225666777777 499999999987 332 22 4556799999999966
Q ss_pred HHHhhccChHHHHHHHHHH
Q 017718 310 VYSLAAEGEKGVRRVLEML 328 (367)
Q Consensus 310 l~~l~~~G~~~v~~~i~~l 328 (367)
... .-++++.+.|..+
T Consensus 241 fQ~---~~p~~m~~Ai~~I 256 (265)
T COG1830 241 FQH---EDPEAMVKAIQAI 256 (265)
T ss_pred hcc---CChHHHHHHHHHH
Confidence 542 2244444444443
|
|
| >PF03932 CutC: CutC family; InterPro: IPR005627 Copper transport in Escherichia coli is mediated by the products of at least six genes, cutA, cutB, cutC, cutD, cutE, and cutF | Back alignment and domain information |
|---|
Probab=94.46 E-value=0.6 Score=42.57 Aligned_cols=121 Identities=20% Similarity=0.289 Sum_probs=68.2
Q ss_pred eecCCHHHHHHHHHHHHHcCCcEEEEecCCCCCCchhHHhhhhcCCCCccccccccccccCccccccchhhHHHhhhccC
Q 017718 130 YVYKDRNVVAQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLTLKNFQGLDLGKMDEANDSGLAAYVAGQID 209 (367)
Q Consensus 130 y~~~d~~~~~~~l~ra~~~G~~ai~itvd~p~~g~r~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d 209 (367)
|...+-+.+.+-++.++++|++.+++.+-.+ |
T Consensus 66 Ys~~E~~~M~~dI~~~~~~GadG~VfG~L~~------------------------------------------------d 97 (201)
T PF03932_consen 66 YSDEEIEIMKEDIRMLRELGADGFVFGALTE------------------------------------------------D 97 (201)
T ss_dssp --HHHHHHHHHHHHHHHHTT-SEEEE--BET------------------------------------------------T
T ss_pred CCHHHHHHHHHHHHHHHHcCCCeeEEEeECC------------------------------------------------C
Confidence 4444556677888888999999998744221 1
Q ss_pred ccccHH---HHHh-hcCCCEEEEec----CCHH-HHHHHHHcCCcEEEEcCCCCCCCCCccchHHHHHHHHHHhcCCCcE
Q 017718 210 RSLSWK---WLQT-ITKLPILVKGV----LTAE-DARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPV 280 (367)
Q Consensus 210 ~~~~~~---~l~~-~~~~Pv~vK~v----~~~~-~a~~~~~~G~d~i~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~~~v 280 (367)
..++.+ .+.+ .-+.|+++=-. .+++ ..+.+.+.|++.|-.|| |. .......+.|.++.+..++++.|
T Consensus 98 g~iD~~~~~~Li~~a~~~~~tFHRAfD~~~d~~~al~~L~~lG~~rVLTSG--g~--~~a~~g~~~L~~lv~~a~~~i~I 173 (201)
T PF03932_consen 98 GEIDEEALEELIEAAGGMPVTFHRAFDEVPDPEEALEQLIELGFDRVLTSG--GA--PTALEGIENLKELVEQAKGRIEI 173 (201)
T ss_dssp SSB-HHHHHHHHHHHTTSEEEE-GGGGGSSTHHHHHHHHHHHT-SEEEEST--TS--SSTTTCHHHHHHHHHHHTTSSEE
T ss_pred CCcCHHHHHHHHHhcCCCeEEEeCcHHHhCCHHHHHHHHHhcCCCEEECCC--CC--CCHHHHHHHHHHHHHHcCCCcEE
Confidence 112222 2222 22566666433 3343 35678899999988754 32 12223456677776666678999
Q ss_pred EEecCCCCHHHHHHHHH-cCCCEE
Q 017718 281 FLDGGVRRGTDVFKALA-LGASGI 303 (367)
Q Consensus 281 ia~GGI~~~~dv~kal~-lGAd~V 303 (367)
++-|||+. +.+.+.+. .|+..+
T Consensus 174 m~GgGv~~-~nv~~l~~~tg~~~~ 196 (201)
T PF03932_consen 174 MPGGGVRA-ENVPELVEETGVREI 196 (201)
T ss_dssp EEESS--T-TTHHHHHHHHT-SEE
T ss_pred EecCCCCH-HHHHHHHHhhCCeEE
Confidence 99999965 44666666 787765
|
A mutation in one or more of these genes results in an increased copper sensitivity. Members of this family are between 200 and 300 amino acids in length and are found in both eukaryotes and bacteria.; GO: 0005507 copper ion binding, 0055070 copper ion homeostasis; PDB: 2BDQ_A 3IWP_I 1X8C_B 1X7I_A 1TWD_B. |
| >KOG2335 consensus tRNA-dihydrouridine synthase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=94.45 E-value=0.53 Score=46.19 Aligned_cols=87 Identities=16% Similarity=0.308 Sum_probs=65.3
Q ss_pred CCceEEEEeecCCHHHHHHHHHHHHHcCCcEEEEecCCCCCCchhHHhhhhcCCCCccccccccccccCccccccchhhH
Q 017718 122 PGIRFFQLYVYKDRNVVAQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLTLKNFQGLDLGKMDEANDSGLA 201 (367)
Q Consensus 122 ~~~~~~QLy~~~d~~~~~~~l~ra~~~G~~ai~itvd~p~~g~r~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~ 201 (367)
+.|....+-...|.+.+.+.++.++++|++.+.||-- .++.+..
T Consensus 141 ~~pVs~KIRI~~d~~kTvd~ak~~e~aG~~~ltVHGR-------tr~~kg~----------------------------- 184 (358)
T KOG2335|consen 141 NVPVSVKIRIFVDLEKTVDYAKMLEDAGVSLLTVHGR-------TREQKGL----------------------------- 184 (358)
T ss_pred CCCeEEEEEecCcHHHHHHHHHHHHhCCCcEEEEecc-------cHHhcCC-----------------------------
Confidence 3567778877899999999999999999998876542 2222200
Q ss_pred HHhhhccCccccHH---HHHhhcC-CCEEEEec-CCHHHHHHHHH-cCCcEEEEc
Q 017718 202 AYVAGQIDRSLSWK---WLQTITK-LPILVKGV-LTAEDARIAVQ-AGAAGIIVS 250 (367)
Q Consensus 202 ~~~~~~~d~~~~~~---~l~~~~~-~Pv~vK~v-~~~~~a~~~~~-~G~d~i~vs 250 (367)
..+..+|+ .||+... +||++=|- .+.+++..+.+ .|+|||.+.
T Consensus 185 ------~~~pad~~~i~~v~~~~~~ipviaNGnI~~~~d~~~~~~~tG~dGVM~a 233 (358)
T KOG2335|consen 185 ------KTGPADWEAIKAVRENVPDIPVIANGNILSLEDVERCLKYTGADGVMSA 233 (358)
T ss_pred ------CCCCcCHHHHHHHHHhCcCCcEEeeCCcCcHHHHHHHHHHhCCceEEec
Confidence 02334787 6777776 99998774 78999999888 999999874
|
|
| >cd00945 Aldolase_Class_I Class I aldolases | Back alignment and domain information |
|---|
Probab=94.32 E-value=0.49 Score=41.77 Aligned_cols=65 Identities=23% Similarity=0.217 Sum_probs=46.4
Q ss_pred HHHHHHHcCCcEEEEcCCCCCCCCCccchHHHHHHHHHHhcC-CCcEEEecCCC--------CHHHHHHHHHcCCCEEEe
Q 017718 235 DARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQG-RIPVFLDGGVR--------RGTDVFKALALGASGIFI 305 (367)
Q Consensus 235 ~a~~~~~~G~d~i~vs~~gg~~~~~~~~~~~~l~~i~~~~~~-~~~via~GGI~--------~~~dv~kal~lGAd~V~i 305 (367)
.++.+.+.|+++|.+.+ +.+..+++..++ ++||++.=|-. .-+.+.++..+|||++++
T Consensus 18 ~~~~~~~~gv~gi~~~g-------------~~i~~~~~~~~~~~~~v~~~v~~~~~~~~~~~~~~~a~~a~~~Gad~i~v 84 (201)
T cd00945 18 LCDEAIEYGFAAVCVNP-------------GYVRLAADALAGSDVPVIVVVGFPTGLTTTEVKVAEVEEAIDLGADEIDV 84 (201)
T ss_pred HHHHHHHhCCcEEEECH-------------HHHHHHHHHhCCCCCeEEEEecCCCCCCcHHHHHHHHHHHHHcCCCEEEE
Confidence 36778899999999843 566666666666 79988733332 234455677799999999
Q ss_pred chHHHHH
Q 017718 306 GRPVVYS 312 (367)
Q Consensus 306 g~~~l~~ 312 (367)
..|+.+.
T Consensus 85 ~~~~~~~ 91 (201)
T cd00945 85 VINIGSL 91 (201)
T ss_pred eccHHHH
Confidence 8887654
|
The class I aldolases use an active-site lysine which stablilzes a reaction intermediates via Schiff base formation, and have TIM beta/alpha barrel fold. The members of this family include 2-keto-3-deoxy-6-phosphogluconate (KDPG) and 2-keto-4-hydroxyglutarate (KHG) aldolases, transaldolase, dihydrodipicolinate synthase sub-family, Type I 3-dehydroquinate dehydratase, DeoC and DhnA proteins, and metal-independent fructose-1,6-bisphosphate aldolase. Although structurally similar, the class II aldolases use a different mechanism and are believed to have an independent evolutionary origin. |
| >PRK12457 2-dehydro-3-deoxyphosphooctonate aldolase; Provisional | Back alignment and domain information |
|---|
Probab=94.29 E-value=1.3 Score=42.24 Aligned_cols=85 Identities=25% Similarity=0.536 Sum_probs=55.8
Q ss_pred cCCCEEEEec--CCHHH----HHHHHHcCCcEEEEcCCCCCCCCC--ccchHHHHHHHHHHhcCCCcEEEe---------
Q 017718 221 TKLPILVKGV--LTAED----ARIAVQAGAAGIIVSNHGARQLDY--VPATIMALEEVVKATQGRIPVFLD--------- 283 (367)
Q Consensus 221 ~~~Pv~vK~v--~~~~~----a~~~~~~G~d~i~vs~~gg~~~~~--~~~~~~~l~~i~~~~~~~~~via~--------- 283 (367)
++.||.+|-- +++++ ++.+...|-.-|++.-.|-+ +.. -...+..++.+++.. ..+|||+|
T Consensus 129 t~kpV~lKrGqf~s~~e~~~aae~i~~~Gn~~vilcERG~~-fgy~~~~~D~~~ip~mk~~~-t~lPVi~DpSHsvq~p~ 206 (281)
T PRK12457 129 TGKPVNIKKPQFMSPTQMKHVVSKCREAGNDRVILCERGSS-FGYDNLVVDMLGFRQMKRTT-GDLPVIFDVTHSLQCRD 206 (281)
T ss_pred cCCeEEecCCCcCCHHHHHHHHHHHHHcCCCeEEEEeCCCC-CCCCCcccchHHHHHHHhhC-CCCCEEEeCCccccCCC
Confidence 5788888876 66655 67788889998888765543 211 133455666665532 26899985
Q ss_pred ------cCCCCHH--HHHHHHHcCCCEEEech
Q 017718 284 ------GGVRRGT--DVFKALALGASGIFIGR 307 (367)
Q Consensus 284 ------GGI~~~~--dv~kal~lGAd~V~ig~ 307 (367)
||-|.-- =+..+++.|||++++=.
T Consensus 207 ~~g~~s~G~re~v~~larAAvA~GaDGl~iEv 238 (281)
T PRK12457 207 PLGAASGGRRRQVLDLARAGMAVGLAGLFLEA 238 (281)
T ss_pred CCCCCCCCCHHHHHHHHHHHHHhCCCEEEEEe
Confidence 4443322 23467779999999986
|
|
| >PRK03170 dihydrodipicolinate synthase; Provisional | Back alignment and domain information |
|---|
Probab=94.28 E-value=0.33 Score=46.60 Aligned_cols=92 Identities=20% Similarity=0.343 Sum_probs=56.2
Q ss_pred HHHHHHcCCcEEEEcCCCCCCCCCccc-hHHHHHHHHHHhcCCCcEEEecCCCCHHHHHH----HHHcCCCEEEechHHH
Q 017718 236 ARIAVQAGAAGIIVSNHGARQLDYVPA-TIMALEEVVKATQGRIPVFLDGGVRRGTDVFK----ALALGASGIFIGRPVV 310 (367)
Q Consensus 236 a~~~~~~G~d~i~vs~~gg~~~~~~~~-~~~~l~~i~~~~~~~~~via~GGI~~~~dv~k----al~lGAd~V~ig~~~l 310 (367)
++.+.+.|+++|.+.++.|-...-... -.+.+..+++.+++++||++.=|=.+-.++++ +-.+|||+|++..|++
T Consensus 28 i~~l~~~Gv~gi~~~Gs~GE~~~ls~~Er~~~~~~~~~~~~~~~~vi~gv~~~~~~~~i~~a~~a~~~G~d~v~~~pP~~ 107 (292)
T PRK03170 28 VDYLIANGTDGLVVVGTTGESPTLTHEEHEELIRAVVEAVNGRVPVIAGTGSNSTAEAIELTKFAEKAGADGALVVTPYY 107 (292)
T ss_pred HHHHHHcCCCEEEECCcCCccccCCHHHHHHHHHHHHHHhCCCCcEEeecCCchHHHHHHHHHHHHHcCCCEEEECCCcC
Confidence 466788999999996654422211222 23345556666677899887434334455543 2347999999999987
Q ss_pred HHhhccChHHHHHHHHHHHH
Q 017718 311 YSLAAEGEKGVRRVLEMLRE 330 (367)
Q Consensus 311 ~~l~~~G~~~v~~~i~~l~~ 330 (367)
+.. .++++.++++.+.+
T Consensus 108 ~~~---~~~~i~~~~~~ia~ 124 (292)
T PRK03170 108 NKP---TQEGLYQHFKAIAE 124 (292)
T ss_pred CCC---CHHHHHHHHHHHHh
Confidence 642 34555555555433
|
|
| >PLN02591 tryptophan synthase | Back alignment and domain information |
|---|
Probab=94.24 E-value=0.88 Score=42.91 Aligned_cols=37 Identities=30% Similarity=0.322 Sum_probs=31.5
Q ss_pred HHHHHhhcCCCEEEEec-CCHHHHHHHHHcCCcEEEEc
Q 017718 214 WKWLQTITKLPILVKGV-LTAEDARIAVQAGAAGIIVS 250 (367)
Q Consensus 214 ~~~l~~~~~~Pv~vK~v-~~~~~a~~~~~~G~d~i~vs 250 (367)
.+.+|+.+++||++.-- .+.++++.+.+.|+||++|.
T Consensus 181 i~~vk~~~~~Pv~vGFGI~~~e~v~~~~~~GADGvIVG 218 (250)
T PLN02591 181 LQELKEVTDKPVAVGFGISKPEHAKQIAGWGADGVIVG 218 (250)
T ss_pred HHHHHhcCCCceEEeCCCCCHHHHHHHHhcCCCEEEEC
Confidence 34888888999998654 66999999999999999994
|
|
| >CHL00200 trpA tryptophan synthase alpha subunit; Provisional | Back alignment and domain information |
|---|
Probab=94.16 E-value=1 Score=42.86 Aligned_cols=36 Identities=19% Similarity=0.259 Sum_probs=31.3
Q ss_pred HHHHhhcCCCEEEEec-CCHHHHHHHHHcCCcEEEEc
Q 017718 215 KWLQTITKLPILVKGV-LTAEDARIAVQAGAAGIIVS 250 (367)
Q Consensus 215 ~~l~~~~~~Pv~vK~v-~~~~~a~~~~~~G~d~i~vs 250 (367)
+.+|+.++.|+.+-.- .++++++.+.++|+|+++|.
T Consensus 195 ~~ir~~t~~Pi~vGFGI~~~e~~~~~~~~GADGvVVG 231 (263)
T CHL00200 195 ETIKKMTNKPIILGFGISTSEQIKQIKGWNINGIVIG 231 (263)
T ss_pred HHHHHhcCCCEEEECCcCCHHHHHHHHhcCCCEEEEC
Confidence 3888888999999764 56999999999999999994
|
|
| >TIGR03569 NeuB_NnaB N-acetylneuraminate synthase | Back alignment and domain information |
|---|
Probab=94.04 E-value=5.5 Score=39.14 Aligned_cols=226 Identities=16% Similarity=0.189 Sum_probs=111.6
Q ss_pred ceEeCcccchhccCChhhH----HHHHHHHHcCCcee-ecCCCCCCHHHHHhhC-CC-ce-----E-----EEEee--cC
Q 017718 73 PIMIAPTAMQKMAHPEGEY----ATARAASAAGTIMT-LSSWSTSSVEEVASTG-PG-IR-----F-----FQLYV--YK 133 (367)
Q Consensus 73 Pi~iAPm~~~~l~~~~~e~----~~a~aa~~~G~~~~-vs~~~~~~~e~i~~~~-~~-~~-----~-----~QLy~--~~ 133 (367)
|++||=+|.. | +|++ .+.++|+++|+..+ +=+ ...+++.... +. .+ | +.+|- .-
T Consensus 1 ~~iIAEig~N---H-~Gdl~~A~~lI~~A~~aGadaVKfQt---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 73 (329)
T TIGR03569 1 TFIIAEAGVN---H-NGSLELAKKLVDAAAEAGADAVKFQT---FKAEDLVSKNAPKAEYQKINTGAEESQLEMLKKLEL 73 (329)
T ss_pred CEEEEEeCCC---c-cCcHHHHHHHHHHHHHhCCCEEEeee---CCHHHhhCcccccccccccCCcCCCcHHHHHHHhCC
Confidence 6788887653 3 3443 68889999998755 222 2333332211 11 11 1 11110 12
Q ss_pred CHHHHHHHHHHHHHcCCcEEEEecCCCCCCchhHHhhhhcCCCCccccccccccccCccccccchhhHHHhhhccCccc-
Q 017718 134 DRNVVAQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLTLKNFQGLDLGKMDEANDSGLAAYVAGQIDRSL- 212 (367)
Q Consensus 134 d~~~~~~~l~ra~~~G~~ai~itvd~p~~g~r~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~- 212 (367)
..+...++.+.+++.|...+.-=.| .+.-|.-..+..|- + +-...++
T Consensus 74 ~~e~~~~L~~~~~~~Gi~~~stpfd-----~~svd~l~~~~v~~-~--------------------------KIaS~~~~ 121 (329)
T TIGR03569 74 SEEDHRELKEYCESKGIEFLSTPFD-----LESADFLEDLGVPR-F--------------------------KIPSGEIT 121 (329)
T ss_pred CHHHHHHHHHHHHHhCCcEEEEeCC-----HHHHHHHHhcCCCE-E--------------------------EECccccc
Confidence 3456777888888888876642122 11122222221110 0 0001222
Q ss_pred cHHHHHh--hcCCCEEEEecC-CHHH----HHHHHHcCCc---EEEEcCCCCCCCCCccchHHHHHHHHHHhcCCCcEEE
Q 017718 213 SWKWLQT--ITKLPILVKGVL-TAED----ARIAVQAGAA---GIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFL 282 (367)
Q Consensus 213 ~~~~l~~--~~~~Pv~vK~v~-~~~~----a~~~~~~G~d---~i~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~~~via 282 (367)
+|..|+. .+++||+++..+ +.++ ++.+.+.|.+ .+.++....+.-......+..++.+++.. .+||..
T Consensus 122 n~pLL~~~A~~gkPvilStGmatl~Ei~~Av~~i~~~G~~~~~i~llhC~s~YP~~~~~~nL~~I~~Lk~~f--~~pVG~ 199 (329)
T TIGR03569 122 NAPLLKKIARFGKPVILSTGMATLEEIEAAVGVLRDAGTPDSNITLLHCTTEYPAPFEDVNLNAMDTLKEAF--DLPVGY 199 (329)
T ss_pred CHHHHHHHHhcCCcEEEECCCCCHHHHHHHHHHHHHcCCCcCcEEEEEECCCCCCCcccCCHHHHHHHHHHh--CCCEEE
Confidence 3443332 368999999874 4444 4455667875 44442211111111123455666666655 589888
Q ss_pred ecCCCCHHHHHHHHHcCCCEEEechHHHHHhhccChHHH----HHHHHHHHHHHHHHHHHhCC
Q 017718 283 DGGVRRGTDVFKALALGASGIFIGRPVVYSLAAEGEKGV----RRVLEMLREEFELAMALSGC 341 (367)
Q Consensus 283 ~GGI~~~~dv~kal~lGAd~V~ig~~~l~~l~~~G~~~v----~~~i~~l~~el~~~m~~~G~ 341 (367)
++=-..-.-...|.++||+ +|=+-|-..-...|++.- -+-+..|.++++..-..+|.
T Consensus 200 SdHt~G~~~~~aAvalGA~--iIEkH~tldk~~~G~D~~~Sl~p~el~~lv~~ir~~~~~lG~ 260 (329)
T TIGR03569 200 SDHTLGIEAPIAAVALGAT--VIEKHFTLDKNLPGPDHKASLEPDELKEMVQGIRNVEKALGD 260 (329)
T ss_pred CCCCccHHHHHHHHHcCCC--EEEeCCChhhcCCCCChhhcCCHHHHHHHHHHHHHHHHHcCC
Confidence 6411112333567789999 455544332223343210 12345666667777777774
|
This family is a subset of the Pfam model pfam03102 and is believed to include only authentic NeuB N-acetylneuraminate (sialic acid) synthase enzymes. The majority of the genes identified by this model are observed adjacent to both the NeuA and NeuC genes which together effect the biosynthesis of CMP-N-acetylneuraminate from UDP-N-acetylglucosamine. |
| >TIGR00167 cbbA ketose-bisphosphate aldolases | Back alignment and domain information |
|---|
Probab=94.03 E-value=1.4 Score=42.44 Aligned_cols=108 Identities=25% Similarity=0.335 Sum_probs=77.6
Q ss_pred CCHHHHHHHHH-cCCcEEEEcC---CCCCCCCCcc--chHHHHHHHHHHhcCCCcEEEecCCCCH-HHHHHHHHcCCCEE
Q 017718 231 LTAEDARIAVQ-AGAAGIIVSN---HGARQLDYVP--ATIMALEEVVKATQGRIPVFLDGGVRRG-TDVFKALALGASGI 303 (367)
Q Consensus 231 ~~~~~a~~~~~-~G~d~i~vs~---~gg~~~~~~~--~~~~~l~~i~~~~~~~~~via~GGI~~~-~dv~kal~lGAd~V 303 (367)
.++++|+...+ .|+|.+.++. ||-+. ..| -.++.|.+|.+.+ ++|+..=||=..+ +++.|++.+|..-|
T Consensus 158 T~peea~~Fv~~TgvD~LAvaiGt~HG~y~--~~p~~Ld~~~L~~I~~~v--~vPLVlHGgSG~~~e~~~~ai~~Gi~Ki 233 (288)
T TIGR00167 158 TDPEEAKEFVKLTGVDSLAAAIGNVHGVYK--GEPKGLDFERLEEIQKYV--NLPLVLHGGSGIPDEEIKKAISLGVVKV 233 (288)
T ss_pred CCHHHHHHHHhccCCcEEeeccCccccccC--CCCCccCHHHHHHHHHHh--CCCEEEeCCCCCCHHHHHHHHHcCCeEE
Confidence 56788877664 7999999974 55432 223 3788999999888 7999998887777 57888999999999
Q ss_pred EechHHHHHhhc-------cC------hHHHHHHHHHHHHHHHHHHHHhCCC
Q 017718 304 FIGRPVVYSLAA-------EG------EKGVRRVLEMLREEFELAMALSGCR 342 (367)
Q Consensus 304 ~ig~~~l~~l~~-------~G------~~~v~~~i~~l~~el~~~m~~~G~~ 342 (367)
=++|.+..+... .. ..-.....+.+++.++..|..+|..
T Consensus 234 Ni~T~l~~a~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~v~~~i~~~gs~ 285 (288)
T TIGR00167 234 NIDTELQIAFAAAVRNYYAENKDYYDPRVWLRPGEKAMKEVVLEKIKLFGSA 285 (288)
T ss_pred EcChHHHHHHHHHHHHHHHhCCCcCCHHHHHHHHHHHHHHHHHHHHHHhCCC
Confidence 999977543210 01 1123345566777778888888754
|
fructose-bisphosphate and tagatose-bisphosphate aldolase. |
| >PRK12737 gatY tagatose-bisphosphate aldolase; Reviewed | Back alignment and domain information |
|---|
Probab=93.94 E-value=6.3 Score=37.91 Aligned_cols=107 Identities=21% Similarity=0.275 Sum_probs=73.0
Q ss_pred CCHHHHHHHH-HcCCcEEEEcC---CCCCCCCCcc--chHHHHHHHHHHhcCCCcEEEecCCCC-HHHHHHHHHcCCCEE
Q 017718 231 LTAEDARIAV-QAGAAGIIVSN---HGARQLDYVP--ATIMALEEVVKATQGRIPVFLDGGVRR-GTDVFKALALGASGI 303 (367)
Q Consensus 231 ~~~~~a~~~~-~~G~d~i~vs~---~gg~~~~~~~--~~~~~l~~i~~~~~~~~~via~GGI~~-~~dv~kal~lGAd~V 303 (367)
.++++|+... +.|+|.+.++. ||-+ .+. -.++.|.+|.+.+ ++|+..=||=.. -+++.|++.+|..-|
T Consensus 155 T~peeA~~Fv~~TgvD~LAvaiGt~HG~y---~~~p~Ld~~~L~~I~~~~--~iPLVlHGgSG~~~e~~~kai~~Gi~Ki 229 (284)
T PRK12737 155 TNPDAAAEFVERTGIDSLAVAIGTAHGLY---KGEPKLDFERLAEIREKV--SIPLVLHGASGVPDEDVKKAISLGICKV 229 (284)
T ss_pred CCHHHHHHHHHHhCCCEEeeccCcccccc---CCCCcCCHHHHHHHHHHh--CCCEEEeCCCCCCHHHHHHHHHCCCeEE
Confidence 5788887655 69999999975 5543 233 3678899999887 789988775444 456778999999999
Q ss_pred EechHHHHHhhc-------cC------hHHHHHHHHHHHHHHHHHHHHhCCC
Q 017718 304 FIGRPVVYSLAA-------EG------EKGVRRVLEMLREEFELAMALSGCR 342 (367)
Q Consensus 304 ~ig~~~l~~l~~-------~G------~~~v~~~i~~l~~el~~~m~~~G~~ 342 (367)
=++|-+..+... +. ..-.....+.+++.++..|+.+|..
T Consensus 230 Ni~T~l~~a~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~v~~~i~~~gs~ 281 (284)
T PRK12737 230 NVATELKIAFSDAVKKYFYENPKANDPRKYMTPGKAAMKEVVREKIKVCGSE 281 (284)
T ss_pred EeCcHHHHHHHHHHHHHHHhCcCcCCHHHHHHHHHHHHHHHHHHHHHHhCCC
Confidence 999977543210 00 0113334456677777777777754
|
|
| >PRK05096 guanosine 5'-monophosphate oxidoreductase; Provisional | Back alignment and domain information |
|---|
Probab=93.84 E-value=0.28 Score=48.00 Aligned_cols=67 Identities=15% Similarity=0.118 Sum_probs=49.4
Q ss_pred HHHHHHHH--cCCcEEEEcCCCCCCCCCccchHHHHHHHHHHhcCCCcEEEecCCCCHHHHHHHHHcCCCEEEec
Q 017718 234 EDARIAVQ--AGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFIG 306 (367)
Q Consensus 234 ~~a~~~~~--~G~d~i~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~~~via~GGI~~~~dv~kal~lGAd~V~ig 306 (367)
+-+..+.+ +|+|.|++.-.-|+ .....+.++++++..+ +++||+ |.|-|++-+...+..|||+|=+|
T Consensus 111 er~~~L~~~~~g~D~iviD~AhGh----s~~~i~~ik~ik~~~P-~~~vIa-GNV~T~e~a~~Li~aGAD~vKVG 179 (346)
T PRK05096 111 EKTKQILALSPALNFICIDVANGY----SEHFVQFVAKAREAWP-DKTICA-GNVVTGEMVEELILSGADIVKVG 179 (346)
T ss_pred HHHHHHHhcCCCCCEEEEECCCCc----HHHHHHHHHHHHHhCC-CCcEEE-ecccCHHHHHHHHHcCCCEEEEc
Confidence 44666777 59999999653232 2346677888887764 567665 99999999888888999998544
|
|
| >cd00439 Transaldolase Transaldolase | Back alignment and domain information |
|---|
Probab=93.65 E-value=6.3 Score=37.20 Aligned_cols=90 Identities=10% Similarity=0.008 Sum_probs=61.8
Q ss_pred cCCCEEEEecCCHHHHHHHHHcCCcEEEEcC-----CCCCCCC-C-----ccchHHHHHHHHHHh---cCCCcEEEecCC
Q 017718 221 TKLPILVKGVLTAEDARIAVQAGAAGIIVSN-----HGARQLD-Y-----VPATIMALEEVVKAT---QGRIPVFLDGGV 286 (367)
Q Consensus 221 ~~~Pv~vK~v~~~~~a~~~~~~G~d~i~vs~-----~gg~~~~-~-----~~~~~~~l~~i~~~~---~~~~~via~GGI 286 (367)
-++++-+-.+.+.+.+..+.++|+++|...- +|..++. . +.+....+.++.+.. +.+..|++.+ +
T Consensus 138 ~GI~vn~T~vfs~~Qa~~aa~Aga~~ispfvgRid~~~~~~~~~~~~d~~~~~gi~~~~~~~~~~~~~~~~tkiL~AS-~ 216 (252)
T cd00439 138 AGISVNVTLIFSIAQYEAVADAGTSVASPFVSRIDTLMDKMLEQIGLDLRGKAGVAQVTLAYKLYKQKFKKQRVLWAS-F 216 (252)
T ss_pred CCCceeeeeecCHHHHHHHHHcCCCEEEEeccHHHHHhhhhccccccccccCcHHHHHHHHHHHHHHhCCCCeEEEEe-e
Confidence 4899999999999999999999999888631 1221110 0 113444444554433 2356676644 9
Q ss_pred CCHHHHHHHHHcCCCEEEechHHHHHh
Q 017718 287 RRGTDVFKALALGASGIFIGRPVVYSL 313 (367)
Q Consensus 287 ~~~~dv~kal~lGAd~V~ig~~~l~~l 313 (367)
++..++.+++ |+|.|-+.-..+..+
T Consensus 217 r~~~~v~~l~--G~d~vT~~p~v~~~l 241 (252)
T cd00439 217 SDTLYVAPLI--GCDTVTTMPDQALEA 241 (252)
T ss_pred CCHHHHHHhh--CCCeeecCHHHHHHH
Confidence 9999998766 999999988777654
|
Enzymes found in the non-oxidative branch of the pentose phosphate pathway, that catalyze the reversible transfer of a dihydroxyacetone group from fructose-6-phosphate to erythrose-4-phosphate yielding sedoheptulose-7-phosphate and glyceraldehyde-3-phosphate. They are members of the class I aldolases, who are characterized by using a Schiff-base mechanism for stabilization of the reaction intermediates. |
| >cd00951 KDGDH 5-dehydro-4-deoxyglucarate dehydratase, also called 5-keto-4-deoxy-glucarate dehydratase (KDGDH), which is member of dihydrodipicolinate synthase (DHDPS) family that comprises several pyruvate-dependent class I aldolases | Back alignment and domain information |
|---|
Probab=93.64 E-value=7 Score=37.46 Aligned_cols=184 Identities=17% Similarity=0.106 Sum_probs=102.8
Q ss_pred ceEeCcccchhccCChhhHHHHHHHHHcCCceee--c---CCCCCCHHHHH-------hhCC--CceEEEEeecCCHHHH
Q 017718 73 PIMIAPTAMQKMAHPEGEYATARAASAAGTIMTL--S---SWSTSSVEEVA-------STGP--GIRFFQLYVYKDRNVV 138 (367)
Q Consensus 73 Pi~iAPm~~~~l~~~~~e~~~a~aa~~~G~~~~v--s---~~~~~~~e~i~-------~~~~--~~~~~QLy~~~d~~~~ 138 (367)
|.++.|+.-.+-.+.++-..+.+.+.+.|+..++ | ++...+.||-. +... -|.+.++- . +-+..
T Consensus 6 ~a~vTPf~~dg~iD~~~l~~l~~~l~~~Gv~gi~v~GstGE~~~Ls~eEr~~l~~~~~~~~~~~~pvi~gv~-~-~t~~~ 83 (289)
T cd00951 6 SFPVTHFDADGSFDEDAYRAHVEWLLSYGAAALFAAGGTGEFFSLTPDEYAQVVRAAVEETAGRVPVLAGAG-Y-GTATA 83 (289)
T ss_pred EEeecCCCCCCCcCHHHHHHHHHHHHHcCCCEEEECcCCcCcccCCHHHHHHHHHHHHHHhCCCCCEEEecC-C-CHHHH
Confidence 5567777443334444445677778888876442 3 33455666532 2222 35677764 3 66777
Q ss_pred HHHHHHHHHcCCcEEEEecCCCCCCchhHHhhhhcCCCCccccccccccccCccccccchhhHHHhhhccCccccHHHHH
Q 017718 139 AQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLTLKNFQGLDLGKMDEANDSGLAAYVAGQIDRSLSWKWLQ 218 (367)
Q Consensus 139 ~~~l~ra~~~G~~ai~itvd~p~~g~r~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~l~ 218 (367)
.+++++++++|++++.+.. |.. ...+ ..+..+ -++.|.
T Consensus 84 i~~a~~a~~~Gad~v~~~p--P~y-----------------~~~~-------------~~~i~~----------~f~~v~ 121 (289)
T cd00951 84 IAYAQAAEKAGADGILLLP--PYL-----------------TEAP-------------QEGLYA----------HVEAVC 121 (289)
T ss_pred HHHHHHHHHhCCCEEEECC--CCC-----------------CCCC-------------HHHHHH----------HHHHHH
Confidence 7899999999999998721 211 0000 001111 123666
Q ss_pred hhcCCCEEEEec----CCHHHHHHHHH-cCCcEEEEcCCCCCCCCCccchHHHHHHHHHHhcCCCcEEEecCCCCHHH-H
Q 017718 219 TITKLPILVKGV----LTAEDARIAVQ-AGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTD-V 292 (367)
Q Consensus 219 ~~~~~Pv~vK~v----~~~~~a~~~~~-~G~d~i~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~~~via~GGI~~~~d-v 292 (367)
+.+++||++=.. .+++...++.+ .. ..+-+ .++. ..+..+.++.+..++++.|+. | -.+.++ +
T Consensus 122 ~~~~~pi~lYn~~g~~l~~~~l~~L~~~~p-nivgi-------Kds~-~d~~~~~~~~~~~~~~~~v~~-G-~~~~d~~~ 190 (289)
T cd00951 122 KSTDLGVIVYNRANAVLTADSLARLAERCP-NLVGF-------KDGV-GDIELMRRIVAKLGDRLLYLG-G-LPTAEVFA 190 (289)
T ss_pred hcCCCCEEEEeCCCCCCCHHHHHHHHhcCC-CEEEE-------EeCC-CCHHHHHHHHHhcCCCeEEEe-C-CCcchHhH
Confidence 677899988754 46777777776 33 22222 1111 234445555555544454333 3 222233 5
Q ss_pred HHHHHcCCCEEEechHHHH
Q 017718 293 FKALALGASGIFIGRPVVY 311 (367)
Q Consensus 293 ~kal~lGAd~V~ig~~~l~ 311 (367)
..++.+||++++.|..-++
T Consensus 191 ~~~l~~Ga~G~is~~~n~~ 209 (289)
T cd00951 191 LAYLAMGVPTYSSAVFNFV 209 (289)
T ss_pred HHHHHCCCCEEEechhhhh
Confidence 7788999999988875544
|
The enzyme is involved in glucarate metabolism, and its mechanism presumbly involves a Schiff-base intermediate similar to members of DHDPS family. While in the case of Pseudomonas sp. 5-dehydro-4-deoxy-D-glucarate is degraded by KDGDH to 2,5-dioxopentanoate, in certain species of Enterobacteriaceae it is degraded instead to pyruvate and glycerate. |
| >TIGR00736 nifR3_rel_arch TIM-barrel protein, putative | Back alignment and domain information |
|---|
Probab=93.48 E-value=0.64 Score=43.32 Aligned_cols=81 Identities=17% Similarity=0.049 Sum_probs=54.9
Q ss_pred CceEEEEeecCCHHHHHHHHHHHHHcCCcEEEEecCCCCCCchhHHhhhhcCCCCccccccccccccCccccccchhhHH
Q 017718 123 GIRFFQLYVYKDRNVVAQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLTLKNFQGLDLGKMDEANDSGLAA 202 (367)
Q Consensus 123 ~~~~~QLy~~~d~~~~~~~l~ra~~~G~~ai~itvd~p~~g~r~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~ 202 (367)
.|.++.+-.+.+...+.+++++++++|+++|.| |+-. |.
T Consensus 135 ~PVsvKiR~~~~~~~~~~~a~~l~~aGad~i~V--d~~~--------------~g------------------------- 173 (231)
T TIGR00736 135 KPIFVKIRGNCIPLDELIDALNLVDDGFDGIHV--DAMY--------------PG------------------------- 173 (231)
T ss_pred CcEEEEeCCCCCcchHHHHHHHHHHcCCCEEEE--eeCC--------------CC-------------------------
Confidence 467777765445455667888888888888855 3100 00
Q ss_pred HhhhccCccccHH---HHHhhcC-CCEEEEe-cCCHHHHHHHHHcCCcEEEEc
Q 017718 203 YVAGQIDRSLSWK---WLQTITK-LPILVKG-VLTAEDARIAVQAGAAGIIVS 250 (367)
Q Consensus 203 ~~~~~~d~~~~~~---~l~~~~~-~Pv~vK~-v~~~~~a~~~~~~G~d~i~vs 250 (367)
.+..+|+ .+++..+ +|||.=+ +.+.++|....++|||+|.+.
T Consensus 174 ------~~~a~~~~I~~i~~~~~~ipIIgNGgI~s~eda~e~l~~GAd~Vmvg 220 (231)
T TIGR00736 174 ------KPYADMDLLKILSEEFNDKIIIGNNSIDDIESAKEMLKAGADFVSVA 220 (231)
T ss_pred ------CchhhHHHHHHHHHhcCCCcEEEECCcCCHHHHHHHHHhCCCeEEEc
Confidence 0112465 6667764 8887655 478999999999999999883
|
Members of this family show a distant relationship by PSI-BLAST to alpha/beta (TIM) barrel enzymes such as dihydroorotate dehydrogenase and glycolate oxidase. At least two closely related but well-separable families among the bacteria, the nifR3/yhdG family and the yjbN family, share a more distant relationship to this family of shorter, exclusively archaeal proteins. |
| >cd02809 alpha_hydroxyacid_oxid_FMN Family of homologous FMN-dependent alpha-hydroxyacid oxidizing enzymes | Back alignment and domain information |
|---|
Probab=93.47 E-value=0.75 Score=44.37 Aligned_cols=89 Identities=20% Similarity=0.186 Sum_probs=62.1
Q ss_pred cHHHHHhhcCCCEEEEecC--CHH----HHHHHHHcCCcEEEEcCCCCCCCCCccchHHHHHHHHHHhcCCCcEEEecCC
Q 017718 213 SWKWLQTITKLPILVKGVL--TAE----DARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGV 286 (367)
Q Consensus 213 ~~~~l~~~~~~Pv~vK~v~--~~~----~a~~~~~~G~d~i~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~~~via~GGI 286 (367)
+.+.+++..+.|+++-... +++ .++.+.+.|+++|.+.- +....+....++.+.++++.+ ++||++- ++
T Consensus 106 ~~~~i~~~~~~~~~~ql~~~~~~~~~~~~i~~~~~~g~~~i~l~~--~~p~~~~~~~~~~i~~l~~~~--~~pvivK-~v 180 (299)
T cd02809 106 SLEEVAAAAPGPRWFQLYVPRDREITEDLLRRAEAAGYKALVLTV--DTPVLGRRLTWDDLAWLRSQW--KGPLILK-GI 180 (299)
T ss_pred CHHHHHHhcCCCeEEEEeecCCHHHHHHHHHHHHHcCCCEEEEec--CCCCCCCCCCHHHHHHHHHhc--CCCEEEe-ec
Confidence 3446666556788777652 333 46677889999999842 211111113567788888776 6898885 58
Q ss_pred CCHHHHHHHHHcCCCEEEec
Q 017718 287 RRGTDVFKALALGASGIFIG 306 (367)
Q Consensus 287 ~~~~dv~kal~lGAd~V~ig 306 (367)
.+.+++.++..+|||+|.+.
T Consensus 181 ~s~~~a~~a~~~G~d~I~v~ 200 (299)
T cd02809 181 LTPEDALRAVDAGADGIVVS 200 (299)
T ss_pred CCHHHHHHHHHCCCCEEEEc
Confidence 99999999999999999884
|
This family occurs in both prokaryotes and eukaryotes. Members of this family include flavocytochrome b2 (FCB2), glycolate oxidase (GOX), lactate monooxygenase (LMO), mandelate dehydrogenase (MDH), and long chain hydroxyacid oxidase (LCHAO). In green plants, glycolate oxidase is one of the key enzymes in photorespiration where it oxidizes glycolate to glyoxylate. LMO catalyzes the oxidation of L-lactate to acetate and carbon dioxide. MDH oxidizes (S)-mandelate to phenylglyoxalate. It is an enzyme in the mandelate pathway that occurs in several strains of Pseudomonas which converts (R)-mandelate to benzoate. |
| >PF04309 G3P_antiterm: Glycerol-3-phosphate responsive antiterminator; InterPro: IPR006699 Glycerol enters bacterial cells via facilitated diffusion, an energy-independent transport process catalysed by the glycerol transport facilitator GlpF, an integral membrane protein of the aquaporin family | Back alignment and domain information |
|---|
Probab=93.45 E-value=0.035 Score=49.37 Aligned_cols=142 Identities=18% Similarity=0.233 Sum_probs=76.8
Q ss_pred eEEEEeecCCHHHHHHHHHHHHHcCCcEEEEecCCCCCCchhHHhhhhcCCCCccccccccccccCccccccchhhHHHh
Q 017718 125 RFFQLYVYKDRNVVAQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLTLKNFQGLDLGKMDEANDSGLAAYV 204 (367)
Q Consensus 125 ~~~QLy~~~d~~~~~~~l~ra~~~G~~ai~itvd~p~~g~r~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 204 (367)
..|=|+ .|-..+.+++++++++| +-+++|+|. ..|+. .....-+++
T Consensus 22 ~vfLl~--g~I~~l~~~v~~~~~~g-K~vfVHiDl----------i~Gl~---------------------~D~~~i~~L 67 (175)
T PF04309_consen 22 VVFLLT--GDIGNLKDIVKRLKAAG-KKVFVHIDL----------IEGLS---------------------RDEAGIEYL 67 (175)
T ss_dssp EEEE-S--EECCCHHHHHHHHHHTT--EEEEECCG----------EETB----------------------SSHHHHHHH
T ss_pred EEEEEc--CcHHHHHHHHHHHHHcC-CEEEEEehh----------cCCCC---------------------CCHHHHHHH
Confidence 344343 45555678889998888 456789983 22221 001123344
Q ss_pred hhccCcc--cc--HHHHH--hhcCCCEEEEec----CCHHH-HHHHHHcCCcEEEEcCCCCCCCCCccchHHHHHHHHHH
Q 017718 205 AGQIDRS--LS--WKWLQ--TITKLPILVKGV----LTAED-ARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKA 273 (367)
Q Consensus 205 ~~~~d~~--~~--~~~l~--~~~~~Pv~vK~v----~~~~~-a~~~~~~G~d~i~vs~~gg~~~~~~~~~~~~l~~i~~~ 273 (367)
.....++ .+ ...++ +..++.-+-+.- .+.+. .+.+.+...|+|-+- .+ -....+.++.+.
T Consensus 68 ~~~~~~dGIISTk~~~i~~Ak~~gl~tIqRiFliDS~al~~~~~~i~~~~PD~vEil-------Pg--~~p~vi~~i~~~ 138 (175)
T PF04309_consen 68 KEYGKPDGIISTKSNLIKRAKKLGLLTIQRIFLIDSSALETGIKQIEQSKPDAVEIL-------PG--VMPKVIKKIREE 138 (175)
T ss_dssp HHTT--SEEEESSHHHHHHHHHTT-EEEEEEE-SSHHHHHHHHHHHHHHT-SEEEEE-------SC--CHHHHHCCCCCC
T ss_pred HHcCCCcEEEeCCHHHHHHHHHcCCEEEEEeeeecHHHHHHHHHHHhhcCCCEEEEc-------hH--HHHHHHHHHHHh
Confidence 4333222 22 22222 223554444442 33444 456678899999882 22 112344444333
Q ss_pred hcCCCcEEEecCCCCHHHHHHHHHcCCCEEEechHHHH
Q 017718 274 TQGRIPVFLDGGVRRGTDVFKALALGASGIFIGRPVVY 311 (367)
Q Consensus 274 ~~~~~~via~GGI~~~~dv~kal~lGAd~V~ig~~~l~ 311 (367)
+ ++|||+.|=|++.+|+.++|..||++|.-..+-||
T Consensus 139 ~--~~PiIAGGLI~~~e~v~~al~aGa~aVSTS~~~LW 174 (175)
T PF04309_consen 139 T--NIPIIAGGLIRTKEDVEEALKAGADAVSTSNKELW 174 (175)
T ss_dssp C--SS-EEEESS--SHHHHHHHCCTTCEEEEE--HHHC
T ss_pred c--CCCEEeecccCCHHHHHHHHHcCCEEEEcCChHhc
Confidence 3 69999999999999999999999999998877665
|
Intracellular glycerol is usually converted to glycerol-3-P in an ATP-requiring phosphorylation reaction catalysed by glycerol kinase (GlpK). Glycerol-3-P, the inducer of the glpFK operon, is not a substrate for GlpF and hence remains entrapped in the cell where it is metabolized further. In some bacterial species, for example Bacillus firmus, glycerol-3-P activates the antiterminator GlpP []. In B. subtilis, glpF and glpK are organised in an operon followed by the glycerol-3-P dehydrogenase-encoding glpD gene and preceded by glpP coding for an antiterminator regulating the expression of glpFK, glpD and glpTQ. Their induction requires the inducer glycerol-3-P, which activates the antiterminator GlpP by allowing it to bind to the leader region of glpD and presumably also of glpFK and glpTQ mRNAs.; GO: 0006355 regulation of transcription, DNA-dependent, 0009607 response to biotic stimulus; PDB: 1VKF_A 3KTS_G. |
| >PRK05835 fructose-bisphosphate aldolase; Provisional | Back alignment and domain information |
|---|
Probab=93.43 E-value=2.3 Score=41.27 Aligned_cols=110 Identities=19% Similarity=0.182 Sum_probs=76.0
Q ss_pred CCHHHHHHHH-HcCCcEEEEcC---CCCCCCCCc-cchHHHHHHHHHHhcCCCcEEEecCCCCHH---------------
Q 017718 231 LTAEDARIAV-QAGAAGIIVSN---HGARQLDYV-PATIMALEEVVKATQGRIPVFLDGGVRRGT--------------- 290 (367)
Q Consensus 231 ~~~~~a~~~~-~~G~d~i~vs~---~gg~~~~~~-~~~~~~l~~i~~~~~~~~~via~GGI~~~~--------------- 290 (367)
.++++|.... +.|+|.+-++- ||-+...+. .-.++.|.+|++.+ ++|+..=||=..+.
T Consensus 155 TdPeeA~~Fv~~TgvD~LAvaiGt~HG~Yk~~~~p~L~f~~L~~I~~~~--~iPLVLHGgSGip~e~~~~~~~~g~~~~~ 232 (307)
T PRK05835 155 VNPKEAEQFVKESQVDYLAPAIGTSHGAFKFKGEPKLDFERLQEVKRLT--NIPLVLHGASAIPDDVRKSYLDAGGDLKG 232 (307)
T ss_pred CCHHHHHHHHHhhCCCEEEEccCccccccCCCCCCccCHHHHHHHHHHh--CCCEEEeCCCCCchHHhhhhhhhcccccc
Confidence 5788887766 57999999874 554322122 23678899998887 79999988766665
Q ss_pred -------HHHHHHHcCCCEEEechHHHHHhhc-------cC------hHHHHHHHHHHHHHHHHHHHHhCCC
Q 017718 291 -------DVFKALALGASGIFIGRPVVYSLAA-------EG------EKGVRRVLEMLREEFELAMALSGCR 342 (367)
Q Consensus 291 -------dv~kal~lGAd~V~ig~~~l~~l~~-------~G------~~~v~~~i~~l~~el~~~m~~~G~~ 342 (367)
++.|++.+|..-|=++|-+..+... .. ..-.....+.+++.++..|+.+|..
T Consensus 233 ~~g~~~e~~~kai~~GI~KiNi~T~l~~a~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~v~~~i~~~gs~ 304 (307)
T PRK05835 233 SKGVPFEFLQESVKGGINKVNTDTDLRIAFIAEVRKVANEDKSQFDLRKFFSPAQLALKNVVKERMKLLGSA 304 (307)
T ss_pred ccCCCHHHHHHHHHcCceEEEeChHHHHHHHHHHHHHHHhCCccCCHHHHHHHHHHHHHHHHHHHHHHhCCC
Confidence 7999999999999999977554221 00 0113334456677777778777754
|
|
| >PRK00230 orotidine 5'-phosphate decarboxylase; Reviewed | Back alignment and domain information |
|---|
Probab=93.41 E-value=0.25 Score=45.90 Aligned_cols=79 Identities=24% Similarity=0.370 Sum_probs=50.6
Q ss_pred HHHHHHHHcCCcEEEEcCCCCCCCCCccchHHHHHHHHHHhcCCCcEEEecCCCCHH-----------HHHHHHHcCCCE
Q 017718 234 EDARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGT-----------DVFKALALGASG 302 (367)
Q Consensus 234 ~~a~~~~~~G~d~i~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~~~via~GGI~~~~-----------dv~kal~lGAd~ 302 (367)
..++.+.+.|+|+++++.+ .+..+++..+ .-.++..+||+ +. .+..++..|||.
T Consensus 139 ~~a~~a~~~g~dgvv~~~~-------------~~~~ir~~~~-~~~~~v~pGI~-~~g~~~~dq~~~~~~~~ai~~Gad~ 203 (230)
T PRK00230 139 RLAKLAQEAGLDGVVCSAQ-------------EAAAIREATG-PDFLLVTPGIR-PAGSDAGDQKRVMTPAQAIAAGSDY 203 (230)
T ss_pred HHHHHHHHcCCeEEEeChH-------------HHHHHHhhcC-CceEEEcCCcC-CCCCCcchHHHHhCHHHHHHcCCCE
Confidence 3466778899999988521 1344544443 33457779997 33 467788899999
Q ss_pred EEechHHHHHhhccChHHHHHHHHHHHHHHH
Q 017718 303 IFIGRPVVYSLAAEGEKGVRRVLEMLREEFE 333 (367)
Q Consensus 303 V~ig~~~l~~l~~~G~~~v~~~i~~l~~el~ 333 (367)
+.+||++..+ .-+ ....+.+++++.
T Consensus 204 iVvGR~I~~a---~dP---~~~a~~i~~~i~ 228 (230)
T PRK00230 204 IVVGRPITQA---ADP---AAAYEAILAEIA 228 (230)
T ss_pred EEECCcccCC---CCH---HHHHHHHHHHhh
Confidence 9999988642 122 234555655543
|
|
| >PF01207 Dus: Dihydrouridine synthase (Dus); InterPro: IPR001269 Members of this family catalyse the reduction of the 5,6-double bond of a uridine residue on tRNA | Back alignment and domain information |
|---|
Probab=93.39 E-value=0.41 Score=46.50 Aligned_cols=85 Identities=21% Similarity=0.364 Sum_probs=55.2
Q ss_pred CCCceEEEEeecCC--HHHHHHHHHHHHHcCCcEEEEecCCCCCCchhHHhhhhcCCCCccccccccccccCccccccch
Q 017718 121 GPGIRFFQLYVYKD--RNVVAQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLTLKNFQGLDLGKMDEANDS 198 (367)
Q Consensus 121 ~~~~~~~QLy~~~d--~~~~~~~l~ra~~~G~~ai~itvd~p~~g~r~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~ 198 (367)
.+.|..+.+-.+.+ .+.+.+++++++++|+++|.||.-++...
T Consensus 121 ~~~pvsvKiR~g~~~~~~~~~~~~~~l~~~G~~~i~vH~Rt~~q~----------------------------------- 165 (309)
T PF01207_consen 121 VPIPVSVKIRLGWDDSPEETIEFARILEDAGVSAITVHGRTRKQR----------------------------------- 165 (309)
T ss_dssp -SSEEEEEEESECT--CHHHHHHHHHHHHTT--EEEEECS-TTCC-----------------------------------
T ss_pred cccceEEecccccccchhHHHHHHHHhhhcccceEEEecCchhhc-----------------------------------
Confidence 34567777665555 67788999999999999998877543310
Q ss_pred hhHHHhhhccCccccHH---HHHhhcCCCEEEEe-cCCHHHHHHHHHc-CCcEEEE
Q 017718 199 GLAAYVAGQIDRSLSWK---WLQTITKLPILVKG-VLTAEDARIAVQA-GAAGIIV 249 (367)
Q Consensus 199 ~~~~~~~~~~d~~~~~~---~l~~~~~~Pv~vK~-v~~~~~a~~~~~~-G~d~i~v 249 (367)
.....+|+ .+++..++||+.=| +.+.++++...+. |+|+|.+
T Consensus 166 ---------~~~~a~w~~i~~i~~~~~ipvi~NGdI~s~~d~~~~~~~tg~dgvMi 212 (309)
T PF01207_consen 166 ---------YKGPADWEAIAEIKEALPIPVIANGDIFSPEDAERMLEQTGADGVMI 212 (309)
T ss_dssp ---------CTS---HHHHHHCHHC-TSEEEEESS--SHHHHHHHCCCH-SSEEEE
T ss_pred ---------CCcccchHHHHHHhhcccceeEEcCccCCHHHHHHHHHhcCCcEEEE
Confidence 01233676 66677789998876 4789999987776 9999998
|
Dihydrouridine modification of tRNA is widely observed in prokaryotes and eukaryotes, and also in some archae. Most dihydrouridines are found in the D loop of t-RNAs. The role of dihydrouridine in tRNA is currently unknown, but may increase conformational flexibility of the tRNA. It is likely that different family members have different substrate specificities, which may overlap. Dus 1 (P53759 from SWISSPROT) from Saccharomyces cerevisiae (Baker's yeast) acts on pre-tRNA-Phe, while Dus 2 (P53720 from SWISSPROT) acts on pre-tRNA-Tyr and pre-tRNA-Leu. Dus 1 is active as a single subunit, requiring NADPH or NADH, and is stimulated by the presence of FAD []. Some family members may be targeted to the mitochondria and even have a role in mitochondria []. ; GO: 0017150 tRNA dihydrouridine synthase activity, 0050660 flavin adenine dinucleotide binding, 0008033 tRNA processing, 0055114 oxidation-reduction process; PDB: 1VHN_A 3B0P_A 3B0V_D 3B0U_Y. |
| >cd03319 L-Ala-DL-Glu_epimerase L-Ala-D/L-Glu epimerase catalyzes the epimerization of L-Ala-D/L-Glu and other dipeptides | Back alignment and domain information |
|---|
Probab=93.38 E-value=3.4 Score=39.91 Aligned_cols=126 Identities=13% Similarity=0.157 Sum_probs=82.4
Q ss_pred eEEEEeecCCHHHHHHHHHHHHHcCCcEEEEecCCCCCCchhHHhhhhcCCCCccccccccccccCccccccchhhHHHh
Q 017718 125 RFFQLYVYKDRNVVAQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLTLKNFQGLDLGKMDEANDSGLAAYV 204 (367)
Q Consensus 125 ~~~QLy~~~d~~~~~~~l~ra~~~G~~ai~itvd~p~~g~r~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 204 (367)
..+++. ..+++.+.+.++++.+.|++++-+.++...
T Consensus 126 ~~~~~~-~~~~~~~~~~~~~~~~~Gf~~iKik~g~~~------------------------------------------- 161 (316)
T cd03319 126 TDYTIS-IDTPEAMAAAAKKAAKRGFPLLKIKLGGDL------------------------------------------- 161 (316)
T ss_pred eEEEEe-CCCHHHHHHHHHHHHHcCCCEEEEEeCCCh-------------------------------------------
Confidence 344554 467777777788888899999988764210
Q ss_pred hhccCccc-cHHHHHhhcC-CCEEEEec--CCHHH----HHHHHHcCCcEEEEcCCCCCCCCCccchHHHHHHHHHHhcC
Q 017718 205 AGQIDRSL-SWKWLQTITK-LPILVKGV--LTAED----ARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQG 276 (367)
Q Consensus 205 ~~~~d~~~-~~~~l~~~~~-~Pv~vK~v--~~~~~----a~~~~~~G~d~i~vs~~gg~~~~~~~~~~~~l~~i~~~~~~ 276 (367)
+.+. -.+.+|+..+ +++.++.- .+.++ ++.+.+.+++.|-- ...+..++.++++++..
T Consensus 162 ----~~d~~~v~~lr~~~g~~~l~vD~n~~~~~~~A~~~~~~l~~~~l~~iEe--------P~~~~d~~~~~~L~~~~-- 227 (316)
T cd03319 162 ----EDDIERIRAIREAAPDARLRVDANQGWTPEEAVELLRELAELGVELIEQ--------PVPAGDDDGLAYLRDKS-- 227 (316)
T ss_pred ----hhHHHHHHHHHHhCCCCeEEEeCCCCcCHHHHHHHHHHHHhcCCCEEEC--------CCCCCCHHHHHHHHhcC--
Confidence 0001 1225555553 66777654 23344 45566777766631 11234567788887765
Q ss_pred CCcEEEecCCCCHHHHHHHHHc-CCCEEEechH
Q 017718 277 RIPVFLDGGVRRGTDVFKALAL-GASGIFIGRP 308 (367)
Q Consensus 277 ~~~via~GGI~~~~dv~kal~l-GAd~V~ig~~ 308 (367)
++||++++.+.+..|+.+++.. ++|.|++--.
T Consensus 228 ~ipIa~~E~~~~~~~~~~~~~~~~~d~v~~~~~ 260 (316)
T cd03319 228 PLPIMADESCFSAADAARLAGGGAYDGINIKLM 260 (316)
T ss_pred CCCEEEeCCCCCHHHHHHHHhcCCCCEEEEecc
Confidence 7999999999999999999995 5888888643
|
The genomic context and the substrate specificity of characterized members of this family from E.coli and B.subtilis indicates a possible role in the metabolism of the murein peptide of peptidoglycan, of which L-Ala-D-Glu is a component. L-Ala-D/L-Glu epimerase is a member of the enolase-superfamily, which is characterized by the presence of an enolate anion intermediate which is generated by abstraction of the alpha-proton of the carboxylate substrate by an active site residue and is stabilized by coordination to the essential Mg2+ ion. |
| >cd04728 ThiG Thiazole synthase (ThiG) is the tetrameric enzyme that is involved in the formation of the thiazole moiety of thiamin pyrophosphate, an essential ubiquitous cofactor that plays an important role in carbohydrate and amino acid metabolism | Back alignment and domain information |
|---|
Probab=93.35 E-value=0.59 Score=43.75 Aligned_cols=104 Identities=24% Similarity=0.379 Sum_probs=64.4
Q ss_pred CceEEEEeecCCHH----HHHHHHHHHHHc---CCcEEEEecCCCCCCchhHHhhhhcCCCCccccccccccccCccccc
Q 017718 123 GIRFFQLYVYKDRN----VVAQLVRRAERA---GFKAIALTVDTPRLGRREADIKNRFTLPPFLTLKNFQGLDLGKMDEA 195 (367)
Q Consensus 123 ~~~~~QLy~~~d~~----~~~~~l~ra~~~---G~~ai~itvd~p~~g~r~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~ 195 (367)
+..|+.|=+-.|+. ...+.++++++. |+..+-+..|.|+.++|-.++.-.+ +|+ ....
T Consensus 90 ~~~~iKlEVi~d~~~Llpd~~~tv~aa~~L~~~Gf~vlpyc~dd~~~ar~l~~~G~~~-vmP--------------lg~p 154 (248)
T cd04728 90 GTDWIKLEVIGDDKTLLPDPIETLKAAEILVKEGFTVLPYCTDDPVLAKRLEDAGCAA-VMP--------------LGSP 154 (248)
T ss_pred CCCeEEEEEecCccccccCHHHHHHHHHHHHHCCCEEEEEeCCCHHHHHHHHHcCCCE-eCC--------------CCcC
Confidence 34677765434332 234566677766 9999878888888777766652111 111 0000
Q ss_pred cchhhHHHhhhccCccccH---HHHHhhcCCCEEEEe-cCCHHHHHHHHHcCCcEEEEc
Q 017718 196 NDSGLAAYVAGQIDRSLSW---KWLQTITKLPILVKG-VLTAEDARIAVQAGAAGIIVS 250 (367)
Q Consensus 196 ~~~~~~~~~~~~~d~~~~~---~~l~~~~~~Pv~vK~-v~~~~~a~~~~~~G~d~i~vs 250 (367)
-+++ ..-.++ +.+++..++||++-+ +.+++++..+.+.|+|++.+.
T Consensus 155 IGsg---------~Gi~~~~~I~~I~e~~~vpVI~egGI~tpeda~~AmelGAdgVlV~ 204 (248)
T cd04728 155 IGSG---------QGLLNPYNLRIIIERADVPVIVDAGIGTPSDAAQAMELGADAVLLN 204 (248)
T ss_pred CCCC---------CCCCCHHHHHHHHHhCCCcEEEeCCCCCHHHHHHHHHcCCCEEEEC
Confidence 0000 011123 366666789998876 478999999999999999983
|
ThiG catalyzes the formation of thiazole from 1-deoxy-D-xylulose 5-phosphate (DXP) and dehydroglycine, with the help of the sulfur carrier protein ThiS that carries the sulfur needed for thiazole assembly on its carboxy terminus (ThiS-COSH). |
| >cd06556 ICL_KPHMT Members of the ICL/PEPM_KPHMT enzyme superfamily catalyze the formation and cleavage of either P-C or C-C bonds | Back alignment and domain information |
|---|
Probab=93.32 E-value=0.45 Score=44.58 Aligned_cols=85 Identities=16% Similarity=0.107 Sum_probs=57.1
Q ss_pred cCCCEEEEecCCHHHHHHHHHcCCcEEEEcCCCCC----CCCCccchHHH----HHHHHHHhcCCCcEEEecCCC---CH
Q 017718 221 TKLPILVKGVLTAEDARIAVQAGAAGIIVSNHGAR----QLDYVPATIMA----LEEVVKATQGRIPVFLDGGVR---RG 289 (367)
Q Consensus 221 ~~~Pv~vK~v~~~~~a~~~~~~G~d~i~vs~~gg~----~~~~~~~~~~~----l~~i~~~~~~~~~via~GGI~---~~ 289 (367)
.+-|+++=++-+.-.|+.+.++|+|+|.++++++. ..|.+.-+++- ++.|.+.+ ...||++|.--. ++
T Consensus 10 ~~~~i~~~~ayD~~sA~i~e~aG~dai~v~~s~~a~~~G~pD~~~vtl~em~~~~~~I~r~~-~~~pviaD~~~G~g~~~ 88 (240)
T cd06556 10 EKERFATLTAYDYSMAKQFADAGLNVMLVGDSQGMTVAGYDDTLPYPVNDVPYHVRAVRRGA-PLALIVADLPFGAYGAP 88 (240)
T ss_pred CCCeEEEecCCCHHHHHHHHHcCCCEEEEChHHHHHhcCCCCCCCcCHHHHHHHHHHHHhhC-CCCCEEEeCCCCCCcCH
Confidence 35788888888899999999999999999875432 12333334433 33333333 147999976443 33
Q ss_pred HHH----HHHHHcCCCEEEec
Q 017718 290 TDV----FKALALGASGIFIG 306 (367)
Q Consensus 290 ~dv----~kal~lGAd~V~ig 306 (367)
+++ .+.+..||++|-|-
T Consensus 89 ~~~~~~~~~l~~aGa~gv~iE 109 (240)
T cd06556 89 TAAFELAKTFMRAGAAGVKIE 109 (240)
T ss_pred HHHHHHHHHHHHcCCcEEEEc
Confidence 554 45667899999993
|
Typical members are phosphoenolpyruvate mutase (PEPM), phosphonopyruvate hydrolase (PPH), carboxyPEP mutase (CPEP mutase), oxaloacetate hydrolase (OAH), isocitrate lyase (ICL), 2-methylisocitrate lyase (MICL), and ketopantoate hydroxymethyltransferase (KPHMT). |
| >TIGR01362 KDO8P_synth 3-deoxy-8-phosphooctulonate synthase | Back alignment and domain information |
|---|
Probab=93.31 E-value=2.3 Score=40.04 Aligned_cols=83 Identities=25% Similarity=0.396 Sum_probs=54.8
Q ss_pred cCCCEEEEec--CCHHH----HHHHHHcCCcEEEEcCCCCCCCCCc--cchHHHHHHHHHHhcCCCcEEEe---------
Q 017718 221 TKLPILVKGV--LTAED----ARIAVQAGAAGIIVSNHGARQLDYV--PATIMALEEVVKATQGRIPVFLD--------- 283 (367)
Q Consensus 221 ~~~Pv~vK~v--~~~~~----a~~~~~~G~d~i~vs~~gg~~~~~~--~~~~~~l~~i~~~~~~~~~via~--------- 283 (367)
++.||.+|-- .++++ ++.+...|-+-|++.-.|- .+... ...+..++.+++ . .+|||+|
T Consensus 115 t~kpV~lKrG~~~t~~e~l~aaeyi~~~Gn~~viLcERG~-tf~y~r~~~D~~~ip~~k~-~--~~PVi~DpSHsvq~pg 190 (258)
T TIGR01362 115 TGRIVNVKKGQFLSPWDMKNVVEKVLSTGNKNILLCERGT-SFGYNNLVVDMRSLPIMRE-L--GCPVIFDATHSVQQPG 190 (258)
T ss_pred cCCeEEecCCCcCCHHHHHHHHHHHHHcCCCcEEEEeCCC-CcCCCCcccchhhhHHHHh-c--CCCEEEeCCccccCCC
Confidence 5778888876 56655 7778888988888875553 33222 224455665554 3 5899995
Q ss_pred ------cCCCCHHH--HHHHHHcCCCEEEech
Q 017718 284 ------GGVRRGTD--VFKALALGASGIFIGR 307 (367)
Q Consensus 284 ------GGI~~~~d--v~kal~lGAd~V~ig~ 307 (367)
||.|.-.- +..++++|||++++=.
T Consensus 191 ~~g~~s~G~r~~v~~la~AAvA~GaDGl~iEv 222 (258)
T TIGR01362 191 GLGGASGGLREFVPTLARAAVAVGIDGLFMET 222 (258)
T ss_pred CCCCCCCCcHHHHHHHHHHHHHhCCCEEEEEe
Confidence 55544322 2357889999999976
|
In Gram-negative bacteria, this is the first step in the biosynthesis of 3-deoxy-D-manno-octulosonate, part of the oligosaccharide core of lipopolysaccharide. |
| >PRK12738 kbaY tagatose-bisphosphate aldolase; Reviewed | Back alignment and domain information |
|---|
Probab=93.21 E-value=3 Score=40.14 Aligned_cols=109 Identities=17% Similarity=0.271 Sum_probs=74.1
Q ss_pred CCHHHHHHHH-HcCCcEEEEcC---CCCCCCCCccchHHHHHHHHHHhcCCCcEEEecCCCC-HHHHHHHHHcCCCEEEe
Q 017718 231 LTAEDARIAV-QAGAAGIIVSN---HGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRR-GTDVFKALALGASGIFI 305 (367)
Q Consensus 231 ~~~~~a~~~~-~~G~d~i~vs~---~gg~~~~~~~~~~~~l~~i~~~~~~~~~via~GGI~~-~~dv~kal~lGAd~V~i 305 (367)
.++++|+... +.|+|.+-++. ||-+.. ...-.++.|.+|.+.+ ++|+..=||=.. .+++.|+..+|-.-|=+
T Consensus 155 T~peea~~Fv~~TgvD~LAvaiGt~HG~Y~~-~p~Ldfd~l~~I~~~~--~vPLVLHGgSG~~~e~~~kai~~GI~KiNi 231 (286)
T PRK12738 155 TDPQEAKRFVELTGVDSLAVAIGTAHGLYSK-TPKIDFQRLAEIREVV--DVPLVLHGASDVPDEFVRRTIELGVTKVNV 231 (286)
T ss_pred CCHHHHHHHHHHhCCCEEEeccCcccCCCCC-CCcCCHHHHHHHHHHh--CCCEEEeCCCCCCHHHHHHHHHcCCeEEEe
Confidence 5788887766 57999999874 554421 1123678899999888 799888664333 57778899999999999
Q ss_pred chHHHHHhhc-------cCh------HHHHHHHHHHHHHHHHHHHHhCCC
Q 017718 306 GRPVVYSLAA-------EGE------KGVRRVLEMLREEFELAMALSGCR 342 (367)
Q Consensus 306 g~~~l~~l~~-------~G~------~~v~~~i~~l~~el~~~m~~~G~~ 342 (367)
+|.+..+... ..+ .-.....+.+++-++..|+.+|..
T Consensus 232 ~T~l~~a~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~v~~~i~~~gs~ 281 (286)
T PRK12738 232 ATELKIAFAGAVKAWFAENPQGNDPRYYMRVGMDAMKEVVRNKINVCGSA 281 (286)
T ss_pred CcHHHHHHHHHHHHHHHhCCCcCCHHHHHHHHHHHHHHHHHHHHHHhCCC
Confidence 9977654321 111 123344456677777778877754
|
|
| >PRK08610 fructose-bisphosphate aldolase; Reviewed | Back alignment and domain information |
|---|
Probab=93.17 E-value=2.4 Score=40.76 Aligned_cols=108 Identities=20% Similarity=0.281 Sum_probs=75.3
Q ss_pred CCHHHHHHHH-HcCCcEEEEcC---CCCCCCCCcc-chHHHHHHHHHHhcCCCcEEEecCCCCH-HHHHHHHHcCCCEEE
Q 017718 231 LTAEDARIAV-QAGAAGIIVSN---HGARQLDYVP-ATIMALEEVVKATQGRIPVFLDGGVRRG-TDVFKALALGASGIF 304 (367)
Q Consensus 231 ~~~~~a~~~~-~~G~d~i~vs~---~gg~~~~~~~-~~~~~l~~i~~~~~~~~~via~GGI~~~-~dv~kal~lGAd~V~ 304 (367)
.++++|+... +.|+|.+-++. ||-+. +.| -.++.|.+|.+.+ ++|+..=||=..+ +++.|++.+|..-|=
T Consensus 156 T~peea~~Fv~~TgvD~LAvaiGt~HG~Y~--~~p~Ld~~~L~~I~~~~--~vPLVLHGgSG~~~e~~~~ai~~GI~KiN 231 (286)
T PRK08610 156 ADPKECQELVEKTGIDALAPALGSVHGPYK--GEPKLGFKEMEEIGLST--GLPLVLHGGTGIPTKDIQKAIPFGTAKIN 231 (286)
T ss_pred CCHHHHHHHHHHHCCCEEEeeccccccccC--CCCCCCHHHHHHHHHHH--CCCEEEeCCCCCCHHHHHHHHHCCCeEEE
Confidence 5788887765 57999999975 55432 212 3678899998887 7999998887666 677789999999999
Q ss_pred echHHHHHhhc-------cC------hHHHHHHHHHHHHHHHHHHHHhCCC
Q 017718 305 IGRPVVYSLAA-------EG------EKGVRRVLEMLREEFELAMALSGCR 342 (367)
Q Consensus 305 ig~~~l~~l~~-------~G------~~~v~~~i~~l~~el~~~m~~~G~~ 342 (367)
++|-+-.+... .. ..-.....+.+++.++..|+.+|..
T Consensus 232 i~T~l~~a~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~v~~~i~~fgs~ 282 (286)
T PRK08610 232 VNTENQIASAKAVRDVLNNDKEVYDPRKYLGPAREAIKETVKGKIKEFGTS 282 (286)
T ss_pred eccHHHHHHHHHHHHHHHhccccCCHHHHHHHHHHHHHHHHHHHHHHhCCC
Confidence 99977543210 01 0123344556677777777777754
|
|
| >COG1646 Predicted phosphate-binding enzymes, TIM-barrel fold [General function prediction only] | Back alignment and domain information |
|---|
Probab=93.15 E-value=0.41 Score=44.32 Aligned_cols=61 Identities=18% Similarity=0.325 Sum_probs=43.4
Q ss_pred cCCcEEEEcCCCCCCCCCccchHHHHHHHHHHhcCCCcEEEecCCCCHHHHHHHHHcCCCEEEechHH
Q 017718 242 AGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFIGRPV 309 (367)
Q Consensus 242 ~G~d~i~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~~~via~GGI~~~~dv~kal~lGAd~V~ig~~~ 309 (367)
.|...+.+--.|| .+.|...+.++++.+ ..++|.-||||+++.+.+...+|||.+..|+.+
T Consensus 163 ~g~~~~YlEagsg---a~~Pv~~e~v~~v~~----~~~LivGGGIrs~E~A~~~a~agAD~IVtG~ii 223 (240)
T COG1646 163 LGMPVVYLEAGSG---AGDPVPVEMVSRVLS----DTPLIVGGGIRSPEQAREMAEAGADTIVTGTII 223 (240)
T ss_pred hCCeEEEEEecCC---CCCCcCHHHHHHhhc----cceEEEcCCcCCHHHHHHHHHcCCCEEEECcee
Confidence 4555565532222 234555566654433 459999999999999999999999999999855
|
|
| >cd00516 PRTase_typeII Phosphoribosyltransferase (PRTase) type II; This family contains two enzymes that play an important role in NAD production by either allowing quinolinic acid (QA) , quinolinate phosphoribosyl transferase (QAPRTase), or nicotinic acid (NA), nicotinate phosphoribosyltransferase (NAPRTase), to be used in the synthesis of NAD | Back alignment and domain information |
|---|
Probab=93.10 E-value=0.91 Score=43.20 Aligned_cols=90 Identities=19% Similarity=0.189 Sum_probs=57.3
Q ss_pred HHHhhcCCCEEEEe---cCCHHHHHHHHHcC-CcEEEEcCCCCCCCCCccchHHHHHHHHHHh----cCCCcEEEecCCC
Q 017718 216 WLQTITKLPILVKG---VLTAEDARIAVQAG-AAGIIVSNHGARQLDYVPATIMALEEVVKAT----QGRIPVFLDGGVR 287 (367)
Q Consensus 216 ~l~~~~~~Pv~vK~---v~~~~~a~~~~~~G-~d~i~vs~~gg~~~~~~~~~~~~l~~i~~~~----~~~~~via~GGI~ 287 (367)
.+++..+.|.+.|. +.+.+++..+.++| +|+|-+.+.+-.+ ..+....+. ..+.+ ..++.++++|||.
T Consensus 174 ~~~~~~~~~~~~~idve~~~~~~~~~~~~~~~~d~irlDs~~~~~---~~~~~~~~~-~~~~~~~~~~~~~~i~~Sggi~ 249 (281)
T cd00516 174 ALRRWLPELFIALIDVEVDTLEEALEAAKAGGADGIRLDSGSPEE---LDPAVLILK-ARAHLDGKGLPRVKIEASGGLD 249 (281)
T ss_pred HHHHhCCCCceEEEEEEeCCHHHHHHHHhcCCCCEEEeCCCChHH---HHHHHHHHH-HHHhhhhcCCCceEEEEeCCCC
Confidence 44444332244443 25688899999999 9999887632111 111111221 11111 1367899999997
Q ss_pred CHHHHHHHHHcCCCEEEechHHH
Q 017718 288 RGTDVFKALALGASGIFIGRPVV 310 (367)
Q Consensus 288 ~~~dv~kal~lGAd~V~ig~~~l 310 (367)
.+.+.....+|.|.+.+|+.+.
T Consensus 250 -~~~i~~~~~~gvd~~gvG~~~~ 271 (281)
T cd00516 250 -EENIRAYAETGVDVFGVGTLLH 271 (281)
T ss_pred -HHHHHHHHHcCCCEEEeCcccc
Confidence 8888888889999999998664
|
QAPRTase catalyses the reaction of quinolinic acid (QA) with 5-phosphoribosyl-1-pyrophosphate (PRPP) in the presence of Mg2+ to produce nicotinic acid mononucleotide (NAMN), pyrophosphate and carbon dioxide, an important step in the de novo synthesis of NAD. NAPRTase catalyses a similar reaction leading to NAMN and pyrophosphate, using nicotinic acid an PPRP as substrates, used in the NAD salvage pathway. |
| >COG0135 TrpF Phosphoribosylanthranilate isomerase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=93.04 E-value=5.9 Score=36.29 Aligned_cols=88 Identities=17% Similarity=0.202 Sum_probs=58.6
Q ss_pred HHHHhhcCCCEEEEecCCH---HHHHHHHHcCCcEEEEcCCCCC--CCCCccchHHHHHHHHHHhcCCCcEEEecCCCCH
Q 017718 215 KWLQTITKLPILVKGVLTA---EDARIAVQAGAAGIIVSNHGAR--QLDYVPATIMALEEVVKATQGRIPVFLDGGVRRG 289 (367)
Q Consensus 215 ~~l~~~~~~Pv~vK~v~~~---~~a~~~~~~G~d~i~vs~~gg~--~~~~~~~~~~~l~~i~~~~~~~~~via~GGI~~~ 289 (367)
+.+++..++||+--...+. .........-+|.+.+...... ...+..-+|+.++.. +...|++..||| |+
T Consensus 91 ~~l~~~~~~~v~kai~v~~~~~~~~~~~~~~~~d~~LlDa~~~~~~GGtG~~fDW~~l~~~----~~~~~~~LAGGL-~p 165 (208)
T COG0135 91 DQLKEELGVPVIKAISVSEEGDLELAAREEGPVDAILLDAKVPGLPGGTGQTFDWNLLPKL----RLSKPVMLAGGL-NP 165 (208)
T ss_pred HHHHhhcCCceEEEEEeCCccchhhhhhccCCccEEEEcCCCCCCCCCCCcEECHHHhccc----cccCCEEEECCC-CH
Confidence 3677766788865554332 2344455566899988764211 112334467777654 126789999998 68
Q ss_pred HHHHHHHHcCC-CEEEech
Q 017718 290 TDVFKALALGA-SGIFIGR 307 (367)
Q Consensus 290 ~dv~kal~lGA-d~V~ig~ 307 (367)
++|.++++++. .+|=+.+
T Consensus 166 ~NV~~ai~~~~p~gvDvSS 184 (208)
T COG0135 166 DNVAEAIALGPPYGVDVSS 184 (208)
T ss_pred HHHHHHHHhcCCceEEecc
Confidence 99999999987 8887777
|
|
| >cd01571 NAPRTase_B Nicotinate phosphoribosyltransferase (NAPRTase), subgroup B | Back alignment and domain information |
|---|
Probab=92.94 E-value=0.67 Score=44.93 Aligned_cols=89 Identities=19% Similarity=0.255 Sum_probs=58.0
Q ss_pred HHHhhcC--CCEEEEecCC----HHHHHHHHHc---CCcEEEEcCCCCCCCCCccchHHHHHHHHHHh---c-CCCcEEE
Q 017718 216 WLQTITK--LPILVKGVLT----AEDARIAVQA---GAAGIIVSNHGARQLDYVPATIMALEEVVKAT---Q-GRIPVFL 282 (367)
Q Consensus 216 ~l~~~~~--~Pv~vK~v~~----~~~a~~~~~~---G~d~i~vs~~gg~~~~~~~~~~~~l~~i~~~~---~-~~~~via 282 (367)
..++..+ .|+++ .+-+ .++|..+.++ ++|+|.+.|.+++ .+ -..+.+.++++++ + .++.|++
T Consensus 176 ~~~~~~p~~~~i~v-evdt~~~~v~eal~~~~~~~~~~d~I~lDn~~~~--~G--~~~~~~~~~~~~l~~~g~~~~~iea 250 (302)
T cd01571 176 AFDETYPEDVPRIA-LIDTFNDEKEEALKAAKALGDKLDGVRLDTPSSR--RG--VFRYLIREVRWALDIRGYKHVKIFV 250 (302)
T ss_pred HHHHHCCCcCCeEE-EEeecCcchHHHHHHHHHhCCCCcEEEECCCCCC--CC--CHHHHHHHHHHHHHhCCCCCeEEEE
Confidence 4444444 45544 3433 3466666666 4899999885532 11 1333344444433 2 4688999
Q ss_pred ecCCCCHHHHHHHHHcCCCEEEechHHH
Q 017718 283 DGGVRRGTDVFKALALGASGIFIGRPVV 310 (367)
Q Consensus 283 ~GGI~~~~dv~kal~lGAd~V~ig~~~l 310 (367)
+||| +.+.+.+...+|.|.+.+|+...
T Consensus 251 SGgI-~~~~i~~~a~~gvD~isvGs~~~ 277 (302)
T cd01571 251 SGGL-DEEDIKELEDVGVDAFGVGTAIS 277 (302)
T ss_pred eCCC-CHHHHHHHHHcCCCEEECCcccC
Confidence 9999 88999999999999999999654
|
Nicotinate phosphoribosyltransferase catalyses the formation of NAMN and PPi from 5-phosphoribosy -1-pyrophosphate (PRPP) and nicotinic acid, this is the first, and also rate limiting, reaction in the NAD salvage synthesis. This salvage pathway serves to recycle NAD degradation products. |
| >TIGR00674 dapA dihydrodipicolinate synthase | Back alignment and domain information |
|---|
Probab=92.71 E-value=9.5 Score=36.39 Aligned_cols=183 Identities=16% Similarity=0.135 Sum_probs=101.8
Q ss_pred ceEeCcccchhccCChhhHHHHHHHHHcCCceee--cC---CCCCCHHHHH-------hhC-C-CceEEEEeecCCHHHH
Q 017718 73 PIMIAPTAMQKMAHPEGEYATARAASAAGTIMTL--SS---WSTSSVEEVA-------STG-P-GIRFFQLYVYKDRNVV 138 (367)
Q Consensus 73 Pi~iAPm~~~~l~~~~~e~~~a~aa~~~G~~~~v--s~---~~~~~~e~i~-------~~~-~-~~~~~QLy~~~d~~~~ 138 (367)
|.++.|+.-.+-.+.++-..+.+-+.+.|+..++ |+ +...+.+|-. +.. . -+.++++- ..+.+.+
T Consensus 4 ~a~~TPf~~~g~iD~~~~~~~i~~l~~~Gv~Gi~~~GstGE~~~Ls~~Er~~~~~~~~~~~~~~~~vi~gv~-~~s~~~~ 82 (285)
T TIGR00674 4 TALITPFKEDGSVDFAALEKLIDFQIENGTDAIVVVGTTGESPTLSHEEHKKVIEFVVDLVNGRVPVIAGTG-SNATEEA 82 (285)
T ss_pred CceeCCcCCCCCcCHHHHHHHHHHHHHcCCCEEEECccCcccccCCHHHHHHHHHHHHHHhCCCCeEEEeCC-CccHHHH
Confidence 5567776433333444444666777777866443 32 3445655522 222 2 35566653 3355667
Q ss_pred HHHHHHHHHcCCcEEEEecCCCCCCchhHHhhhhcCCCCccccccccccccCccccccchhhHHHhhhccCccccHHHHH
Q 017718 139 AQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLTLKNFQGLDLGKMDEANDSGLAAYVAGQIDRSLSWKWLQ 218 (367)
Q Consensus 139 ~~~l~ra~~~G~~ai~itvd~p~~g~r~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~l~ 218 (367)
.++++.|++.|++++.+.. |.. .... ...+.+ -++.+.
T Consensus 83 i~~a~~a~~~Gad~v~v~p--P~y-----------------~~~~-------------~~~i~~----------~~~~i~ 120 (285)
T TIGR00674 83 ISLTKFAEDVGADGFLVVT--PYY-----------------NKPT-------------QEGLYQ----------HFKAIA 120 (285)
T ss_pred HHHHHHHHHcCCCEEEEcC--CcC-----------------CCCC-------------HHHHHH----------HHHHHH
Confidence 7888999999999998732 221 0000 000111 133666
Q ss_pred hhcCCCEEEEec-------CCHHHHHHHHHcCCcEEEEcCCCCCCCCCccchHHHHHHHHHHhcCCCcEEEecCCCCHHH
Q 017718 219 TITKLPILVKGV-------LTAEDARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTD 291 (367)
Q Consensus 219 ~~~~~Pv~vK~v-------~~~~~a~~~~~~G~d~i~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~~~via~GGI~~~~d 291 (367)
+.+++||++=.. .+++..+++.+.. ..+-+ .++. .....+.++.+..++++.|+. | ...-
T Consensus 121 ~~~~~pi~lYn~P~~tg~~l~~~~l~~L~~~~-~v~gi-------K~s~-~d~~~~~~l~~~~~~~~~v~~-G---~d~~ 187 (285)
T TIGR00674 121 EEVDLPIILYNVPSRTGVSLYPETVKRLAEEP-NIVAI-------KEAT-GNLERISEIKAIAPDDFVVLS-G---DDAL 187 (285)
T ss_pred hcCCCCEEEEECcHHhcCCCCHHHHHHHHcCC-CEEEE-------EeCC-CCHHHHHHHHHhcCCCeEEEE-C---chHH
Confidence 667889887654 4677777777654 32222 1111 123445555555544565544 3 2245
Q ss_pred HHHHHHcCCCEEEechHHHH
Q 017718 292 VFKALALGASGIFIGRPVVY 311 (367)
Q Consensus 292 v~kal~lGAd~V~ig~~~l~ 311 (367)
.+..+.+||++.+.|...++
T Consensus 188 ~~~~~~~G~~G~i~~~~~~~ 207 (285)
T TIGR00674 188 TLPMMALGGKGVISVTANVA 207 (285)
T ss_pred HHHHHHcCCCEEEehHHHhh
Confidence 67788999999998876544
|
Dihydrodipicolinate synthase is a homotetrameric enzyme of lysine biosynthesis. E. coli has several paralogs closely related to dihydrodipicoline synthase (DapA), as well as the more distant N-acetylneuraminate lyase. In Pyrococcus horikoshii, the bidirectional best hit with E. coli is to an uncharacterized paralog of DapA, not DapA itself, and it is omitted from the seed. The putative members from the Chlamydias (pathogens with a parasitic metabolism) are easily the most divergent members of the multiple alignment. |
| >PRK00208 thiG thiazole synthase; Reviewed | Back alignment and domain information |
|---|
Probab=92.46 E-value=1 Score=42.15 Aligned_cols=107 Identities=22% Similarity=0.374 Sum_probs=64.9
Q ss_pred CceEEEEeecCCHH----HHHHHHHHHHHc---CCcEEEEecCCCCCCchhHHhhhhcCCCCccccccccccccCccccc
Q 017718 123 GIRFFQLYVYKDRN----VVAQLVRRAERA---GFKAIALTVDTPRLGRREADIKNRFTLPPFLTLKNFQGLDLGKMDEA 195 (367)
Q Consensus 123 ~~~~~QLy~~~d~~----~~~~~l~ra~~~---G~~ai~itvd~p~~g~r~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~ 195 (367)
+..|+.|=+-.|+. ...+.+++++.. |+..+-+..|.|+.++|-.++.-.+ +|+ ....
T Consensus 90 ~~~~iKlEVi~d~~~llpd~~~tv~aa~~L~~~Gf~vlpyc~~d~~~ak~l~~~G~~~-vmP--------------lg~p 154 (250)
T PRK00208 90 GTNWIKLEVIGDDKTLLPDPIETLKAAEILVKEGFVVLPYCTDDPVLAKRLEEAGCAA-VMP--------------LGAP 154 (250)
T ss_pred CCCeEEEEEecCCCCCCcCHHHHHHHHHHHHHCCCEEEEEeCCCHHHHHHHHHcCCCE-eCC--------------CCcC
Confidence 44688775433322 244566777766 9999877888888777766663111 111 0000
Q ss_pred cchhhHHHhhhccCccccHHHHHhhcCCCEEEEec-CCHHHHHHHHHcCCcEEEEc
Q 017718 196 NDSGLAAYVAGQIDRSLSWKWLQTITKLPILVKGV-LTAEDARIAVQAGAAGIIVS 250 (367)
Q Consensus 196 ~~~~~~~~~~~~~d~~~~~~~l~~~~~~Pv~vK~v-~~~~~a~~~~~~G~d~i~vs 250 (367)
-+++.+ + .++. ..+.+++..++||++-+. .+++++..+.+.|+|++.+.
T Consensus 155 IGsg~g--i---~~~~-~i~~i~e~~~vpVIveaGI~tpeda~~AmelGAdgVlV~ 204 (250)
T PRK00208 155 IGSGLG--L---LNPY-NLRIIIEQADVPVIVDAGIGTPSDAAQAMELGADAVLLN 204 (250)
T ss_pred CCCCCC--C---CCHH-HHHHHHHhcCCeEEEeCCCCCHHHHHHHHHcCCCEEEEC
Confidence 001000 0 0111 133666667899988764 78999999999999999983
|
|
| >PRK05198 2-dehydro-3-deoxyphosphooctonate aldolase; Provisional | Back alignment and domain information |
|---|
Probab=92.38 E-value=3.5 Score=39.02 Aligned_cols=83 Identities=29% Similarity=0.405 Sum_probs=54.5
Q ss_pred cCCCEEEEec--CCHHH----HHHHHHcCCcEEEEcCCCCCCCCCcc--chHHHHHHHHHHhcCCCcEEEe---------
Q 017718 221 TKLPILVKGV--LTAED----ARIAVQAGAAGIIVSNHGARQLDYVP--ATIMALEEVVKATQGRIPVFLD--------- 283 (367)
Q Consensus 221 ~~~Pv~vK~v--~~~~~----a~~~~~~G~d~i~vs~~gg~~~~~~~--~~~~~l~~i~~~~~~~~~via~--------- 283 (367)
++.||.+|-- .++++ ++.+...|-.-|++.-.|- .+.... ..+..++.+++ . .+|||+|
T Consensus 123 t~kpV~lKrG~~~t~~e~~~aaeyi~~~Gn~~vilcERG~-tf~y~r~~~D~~~vp~~k~-~--~lPVi~DpSHsvq~pg 198 (264)
T PRK05198 123 TGKVVNIKKGQFLAPWDMKNVVDKVREAGNDKIILCERGT-SFGYNNLVVDMRGLPIMRE-T--GAPVIFDATHSVQLPG 198 (264)
T ss_pred cCCeEEecCCCcCCHHHHHHHHHHHHHcCCCeEEEEeCCC-CcCCCCeeechhhhHHHhh-C--CCCEEEeCCccccCCC
Confidence 5788888876 56655 6778888988888875553 332221 24455665543 3 4899995
Q ss_pred ------cCCCCHHH--HHHHHHcCCCEEEech
Q 017718 284 ------GGVRRGTD--VFKALALGASGIFIGR 307 (367)
Q Consensus 284 ------GGI~~~~d--v~kal~lGAd~V~ig~ 307 (367)
||-|.--- +..++++|||++++=.
T Consensus 199 ~~~~~s~G~r~~v~~la~AAvA~GadGl~iEv 230 (264)
T PRK05198 199 GQGGSSGGQREFVPVLARAAVAVGVAGLFIET 230 (264)
T ss_pred CCCCCCCCcHHHHHHHHHHHHHcCCCEEEEEe
Confidence 45444322 3367789999999975
|
|
| >PRK10550 tRNA-dihydrouridine synthase C; Provisional | Back alignment and domain information |
|---|
Probab=92.33 E-value=1.7 Score=42.33 Aligned_cols=84 Identities=10% Similarity=0.226 Sum_probs=56.5
Q ss_pred CceEEEEeecC-CHHHHHHHHHHHHHcCCcEEEEecCCCCCCchhHHhhhhcCCCCccccccccccccCccccccchhhH
Q 017718 123 GIRFFQLYVYK-DRNVVAQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLTLKNFQGLDLGKMDEANDSGLA 201 (367)
Q Consensus 123 ~~~~~QLy~~~-d~~~~~~~l~ra~~~G~~ai~itvd~p~~g~r~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~ 201 (367)
-|.++.+-.+. +.+...++++.++++|+++|.|+-.+.. +++.
T Consensus 134 ~pVsvKiR~g~~~~~~~~~~a~~l~~~Gvd~i~Vh~Rt~~---------~~y~--------------------------- 177 (312)
T PRK10550 134 LPVTVKVRLGWDSGERKFEIADAVQQAGATELVVHGRTKE---------DGYR--------------------------- 177 (312)
T ss_pred cceEEEEECCCCCchHHHHHHHHHHhcCCCEEEECCCCCc---------cCCC---------------------------
Confidence 36777764432 3344678889999999999988643211 0110
Q ss_pred HHhhhccCccccHH---HHHhhcCCCEEEEec-CCHHHHHHHH-HcCCcEEEE
Q 017718 202 AYVAGQIDRSLSWK---WLQTITKLPILVKGV-LTAEDARIAV-QAGAAGIIV 249 (367)
Q Consensus 202 ~~~~~~~d~~~~~~---~l~~~~~~Pv~vK~v-~~~~~a~~~~-~~G~d~i~v 249 (367)
-+..+|+ .+++..++||+.=+- .++++++.+. +.|+|+|.+
T Consensus 178 -------g~~~~~~~i~~ik~~~~iPVi~nGdI~t~~da~~~l~~~g~DgVmi 223 (312)
T PRK10550 178 -------AEHINWQAIGEIRQRLTIPVIANGEIWDWQSAQQCMAITGCDAVMI 223 (312)
T ss_pred -------CCcccHHHHHHHHhhcCCcEEEeCCcCCHHHHHHHHhccCCCEEEE
Confidence 1122565 777888999887664 7899998876 588999998
|
|
| >TIGR02320 PEP_mutase phosphoenolpyruvate phosphomutase | Back alignment and domain information |
|---|
Probab=92.22 E-value=11 Score=36.15 Aligned_cols=69 Identities=17% Similarity=0.168 Sum_probs=45.4
Q ss_pred HHHHHHcCCcEEEEcCCCCCCCCCccchHHHHHHHHHHhcC---CCcEEEecCCCCHHHHHHHHHcCCCEEEechHHHHH
Q 017718 236 ARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQG---RIPVFLDGGVRRGTDVFKALALGASGIFIGRPVVYS 312 (367)
Q Consensus 236 a~~~~~~G~d~i~vs~~gg~~~~~~~~~~~~l~~i~~~~~~---~~~via~GGI~~~~dv~kal~lGAd~V~ig~~~l~~ 312 (367)
++...++|||+|.+- + ++.+.+.+.++.+.++. ++|++...+-.-...+.+.-.+|.+.|..|..++++
T Consensus 175 a~ay~eAGAD~ifv~--~------~~~~~~ei~~~~~~~~~~~p~~pl~~~~~~~~~~~~~eL~~lG~~~v~~~~~~~~a 246 (285)
T TIGR02320 175 AEAYAEAGADGIMIH--S------RKKDPDEILEFARRFRNHYPRTPLVIVPTSYYTTPTDEFRDAGISVVIYANHLLRA 246 (285)
T ss_pred HHHHHHcCCCEEEec--C------CCCCHHHHHHHHHHhhhhCCCCCEEEecCCCCCCCHHHHHHcCCCEEEEhHHHHHH
Confidence 678899999999983 2 12345556666666543 468876543111123555667899999999877664
|
A closely related enzyme, phosphonopyruvate hydrolase from Variovorax sp. Pal2, is excluded from this model. |
| >PRK05286 dihydroorotate dehydrogenase 2; Reviewed | Back alignment and domain information |
|---|
Probab=92.22 E-value=1.2 Score=44.03 Aligned_cols=100 Identities=22% Similarity=0.191 Sum_probs=60.4
Q ss_pred CceEEEEeecCCHHHHHHHHHHHHHcCCcEEEEecCCCCCCchhHHhhhhcCCCCccccccccccccCccccccchhhHH
Q 017718 123 GIRFFQLYVYKDRNVVAQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLTLKNFQGLDLGKMDEANDSGLAA 202 (367)
Q Consensus 123 ~~~~~QLy~~~d~~~~~~~l~ra~~~G~~ai~itvd~p~~g~r~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~ 202 (367)
-|.++.|-+..+.+.+.++++.++++|+++|.++-..+.. . ++. -+. ..+ ..+.-++..
T Consensus 212 ~PV~vKlsp~~~~~~~~~ia~~l~~~Gadgi~~~nt~~~~---~-~~~----~~~---~~~---------~~gg~SG~~- 270 (344)
T PRK05286 212 VPLLVKIAPDLSDEELDDIADLALEHGIDGVIATNTTLSR---D-GLK----GLP---NAD---------EAGGLSGRP- 270 (344)
T ss_pred CceEEEeCCCCCHHHHHHHHHHHHHhCCcEEEEeCCcccc---c-ccc----ccc---cCC---------CCCCcccHH-
Confidence 4788888755555567889999999999999886543210 0 010 000 000 000000000
Q ss_pred HhhhccCccccHH---HHHhhc--CCCEE-EEecCCHHHHHHHHHcCCcEEEE
Q 017718 203 YVAGQIDRSLSWK---WLQTIT--KLPIL-VKGVLTAEDARIAVQAGAAGIIV 249 (367)
Q Consensus 203 ~~~~~~d~~~~~~---~l~~~~--~~Pv~-vK~v~~~~~a~~~~~~G~d~i~v 249 (367)
.....|+ .+++.. ++||+ +.++.+.+++.....+|||+|.+
T Consensus 271 ------~~~~~l~~v~~l~~~~~~~ipIig~GGI~s~eda~e~l~aGAd~V~v 317 (344)
T PRK05286 271 ------LFERSTEVIRRLYKELGGRLPIIGVGGIDSAEDAYEKIRAGASLVQI 317 (344)
T ss_pred ------HHHHHHHHHHHHHHHhCCCCCEEEECCCCCHHHHHHHHHcCCCHHHH
Confidence 0112343 667777 68987 44568999999999999999877
|
|
| >PF01116 F_bP_aldolase: Fructose-bisphosphate aldolase class-II; InterPro: IPR000771 Fructose-bisphosphate aldolase [, ] is a glycolytic enzyme that catalyses the reversible aldol cleavage or condensation of fructose-1,6-bisphosphate into dihydroxyacetone-phosphate and glyceraldehyde 3-phosphate | Back alignment and domain information |
|---|
Probab=92.19 E-value=4.6 Score=38.91 Aligned_cols=111 Identities=25% Similarity=0.327 Sum_probs=75.9
Q ss_pred CCHHHHHHH-HHcCCcEEEEcC---CCCCCCCCcc-chHHHHHHHHHHhcCCCcEEEecCCCCHH-HHHHHHHcCCCEEE
Q 017718 231 LTAEDARIA-VQAGAAGIIVSN---HGARQLDYVP-ATIMALEEVVKATQGRIPVFLDGGVRRGT-DVFKALALGASGIF 304 (367)
Q Consensus 231 ~~~~~a~~~-~~~G~d~i~vs~---~gg~~~~~~~-~~~~~l~~i~~~~~~~~~via~GGI~~~~-dv~kal~lGAd~V~ 304 (367)
.++++|+.. .+.|+|.+.++- ||.+.....| -.++.|.+|.+.++ ++|+..=||=..+. ++.|++.+|..-|=
T Consensus 155 TdP~~a~~Fv~~TgvD~LAvaiGt~HG~y~~~~~p~Ld~~~L~~I~~~~~-~iPLVlHGgSG~~~e~~~~ai~~Gi~KiN 233 (287)
T PF01116_consen 155 TDPEEAKEFVEETGVDALAVAIGTAHGMYKGGKKPKLDFDRLKEIREAVP-DIPLVLHGGSGLPDEQIRKAIKNGISKIN 233 (287)
T ss_dssp SSHHHHHHHHHHHTTSEEEE-SSSBSSSBSSSSSTC--HHHHHHHHHHHH-TSEEEESSCTTS-HHHHHHHHHTTEEEEE
T ss_pred cCHHHHHHHHHHhCCCEEEEecCccccccCCCCCcccCHHHHHHHHHhcC-CCCEEEECCCCCCHHHHHHHHHcCceEEE
Confidence 568887765 699999999974 5643321122 26788999998774 69999988766555 88899999999999
Q ss_pred echHHHHHhhc-------cC-----h-HHHHHHHHHHHHHHHHHHHHhCCC
Q 017718 305 IGRPVVYSLAA-------EG-----E-KGVRRVLEMLREEFELAMALSGCR 342 (367)
Q Consensus 305 ig~~~l~~l~~-------~G-----~-~~v~~~i~~l~~el~~~m~~~G~~ 342 (367)
++|-+..+... +. + .-.....+.+++.++..|..+|..
T Consensus 234 i~T~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~gs~ 284 (287)
T PF01116_consen 234 IGTELRRAFTDALREYLAENPDKYDPRKLMKAAKEAMKEVVKEKIRLFGSA 284 (287)
T ss_dssp ESHHHHHHHHHHHHHHHHHSTTEHSHHHHHHHHHHHHHHHHHHHHHHHTTT
T ss_pred EehHHHHHHHHHHHHHHHhCcccCCHHHHHHHHHHHHHHHHHHHHHHhCCC
Confidence 99977654321 11 1 223445566777788888888864
|
There are two classes of fructose-bisphosphate aldolases with different catalytic mechanisms. Class-II aldolases [], mainly found in prokaryotes and fungi, are homodimeric enzymes, which require a divalent metal ion, generally zinc, for their activity. This family also includes the Escherichia coli galactitol operon protein, gatY, which catalyses the transformation of tagatose 1,6-bisphosphate into glycerone phosphate and D-glyceraldehyde 3-phosphate; and E. coli N-acetyl galactosamine operon protein, agaY, which catalyses the same reaction. There are two histidine residues in the first half of the sequence of these enzymes that have been shown to be involved in binding a zinc ion [].; GO: 0008270 zinc ion binding, 0016832 aldehyde-lyase activity, 0005975 carbohydrate metabolic process; PDB: 3Q94_A 1RVG_B 1RV8_C 3C4U_A 3C56_B 3C52_A 2FJK_A 3N9R_P 3N9S_A 1GVF_B .... |
| >cd02810 DHOD_DHPD_FMN Dihydroorotate dehydrogenase (DHOD) and Dihydropyrimidine dehydrogenase (DHPD) FMN-binding domain | Back alignment and domain information |
|---|
Probab=92.16 E-value=2.1 Score=40.74 Aligned_cols=152 Identities=24% Similarity=0.228 Sum_probs=82.3
Q ss_pred ccceEeCcccchhccCChhhHHHHHHHHHcCCceeecCCCC---C----------CHHHH----HhhCCCceEEEEeecC
Q 017718 71 SMPIMIAPTAMQKMAHPEGEYATARAASAAGTIMTLSSWST---S----------SVEEV----ASTGPGIRFFQLYVYK 133 (367)
Q Consensus 71 ~~Pi~iAPm~~~~l~~~~~e~~~a~aa~~~G~~~~vs~~~~---~----------~~e~i----~~~~~~~~~~QLy~~~ 133 (367)
..|++++ +.+. .++.-...++.+.+.|+.++-=+++. . .+.++ .+...-|.++.+-...
T Consensus 98 ~~pvi~s-i~g~---~~~~~~~~a~~~~~~G~d~ielN~~cP~~~~~~~~~~~~~~~~eiv~~vr~~~~~pv~vKl~~~~ 173 (289)
T cd02810 98 GQPLIAS-VGGS---SKEDYVELARKIERAGAKALELNLSCPNVGGGRQLGQDPEAVANLLKAVKAAVDIPLLVKLSPYF 173 (289)
T ss_pred CCeEEEE-eccC---CHHHHHHHHHHHHHhCCCEEEEEcCCCCCCCCcccccCHHHHHHHHHHHHHccCCCEEEEeCCCC
Confidence 4676655 3322 12222467888888887755321211 0 11222 2222346777776556
Q ss_pred CHHHHHHHHHHHHHcCCcEEEEecCCCCCCchhHHhhhhcCCCCccccccccccccCccccccchhhHHHhhhccCcccc
Q 017718 134 DRNVVAQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLTLKNFQGLDLGKMDEANDSGLAAYVAGQIDRSLS 213 (367)
Q Consensus 134 d~~~~~~~l~ra~~~G~~ai~itvd~p~~g~r~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~ 213 (367)
+.+.+.++++.++++|++++.++-..... ..+... ..|. ... . ....++ .. .....
T Consensus 174 ~~~~~~~~a~~l~~~Gad~i~~~~~~~~~---~~~~~~--~~~~---~~~--------~-~~g~sg--~~-----~~~~~ 229 (289)
T cd02810 174 DLEDIVELAKAAERAGADGLTAINTISGR---VVDLKT--VGPG---PKR--------G-TGGLSG--AP-----IRPLA 229 (289)
T ss_pred CHHHHHHHHHHHHHcCCCEEEEEcccCcc---ceeccc--Cccc---cCC--------C-CCccCc--HH-----HHHHH
Confidence 66678899999999999999886432210 000000 0000 000 0 000000 00 01123
Q ss_pred HH---HHHhhc--CCCEEEEec-CCHHHHHHHHHcCCcEEEEc
Q 017718 214 WK---WLQTIT--KLPILVKGV-LTAEDARIAVQAGAAGIIVS 250 (367)
Q Consensus 214 ~~---~l~~~~--~~Pv~vK~v-~~~~~a~~~~~~G~d~i~vs 250 (367)
|+ .+++.. ++||+.-+. .+.+++..+.++|||++.+.
T Consensus 230 ~~~v~~i~~~~~~~ipiia~GGI~~~~da~~~l~~GAd~V~vg 272 (289)
T cd02810 230 LRWVARLAARLQLDIPIIGVGGIDSGEDVLEMLMAGASAVQVA 272 (289)
T ss_pred HHHHHHHHHhcCCCCCEEEECCCCCHHHHHHHHHcCccHheEc
Confidence 33 677777 789887664 67999999999999999883
|
DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences and cellular location. Members of class 1 are cytosolic enzymes and multimers while class 2 enzymes are membrane associated and monomeric. The class 1 enzymes can be further divided into subtypes 1A and 1B which are homodimers and heterotetrameric proteins, respectively. DHPD catalyzes the first step in pyrimidine degradation: the NADPH-dependent reduction of uracil and thymine to the corresponding 5,6-dihydropyrimidines. DHPD contains two FAD, two FMN and eight [4Fe-4S] clusters, arranged in two electron transfer chains that pass its homodimeric interface twice. Two of |
| >PF13714 PEP_mutase: Phosphoenolpyruvate phosphomutase; PDB: 1ZLP_A 3EOO_C 1UJQ_D 1O5Q_A 2DUA_A 2HJP_A 2HRW_A 2QIW_A 3KZ2_B 3IH1_B | Back alignment and domain information |
|---|
Probab=92.04 E-value=0.94 Score=42.39 Aligned_cols=84 Identities=31% Similarity=0.378 Sum_probs=56.5
Q ss_pred CCCEEEEecCCHHHHHHHHHcCCcEEEEcCCCC----CCCCCccchH----HHHHHHHHHhcCCCcEEEec--CCCC-HH
Q 017718 222 KLPILVKGVLTAEDARIAVQAGAAGIIVSNHGA----RQLDYVPATI----MALEEVVKATQGRIPVFLDG--GVRR-GT 290 (367)
Q Consensus 222 ~~Pv~vK~v~~~~~a~~~~~~G~d~i~vs~~gg----~~~~~~~~~~----~~l~~i~~~~~~~~~via~G--GI~~-~~ 290 (367)
+.|+++-++-+.-.|+.+.++|.+++.+|+++= ...|.+.-++ +.+++|.+.+ ++||++|+ |..+ +.
T Consensus 8 ~~~l~~p~~~D~~SAr~~e~~Gf~ai~~sg~~~a~s~G~pD~~~lt~~e~~~~~~~I~~~~--~iPv~vD~d~GyG~~~~ 85 (238)
T PF13714_consen 8 GKPLVLPNVWDALSARLAERAGFDAIATSGAGVAASLGYPDGGLLTLTEMLAAVRRIARAV--SIPVIVDADTGYGNDPE 85 (238)
T ss_dssp SSSEEEEEESSHHHHHHHHHTT-SEEEEHHHHHHHHTTS-SSS-S-HHHHHHHHHHHHHHS--SSEEEEE-TTTSSSSHH
T ss_pred CCcEEeCCCcCHHHHHHHHHcCCCEEEechHHHHHHcCCCCCCCCCHHHHHHHHHHHHhhh--cCcEEEEcccccCchhH
Confidence 379999999999999999999999999986421 1245444333 3455566655 89999965 6666 44
Q ss_pred H----HHHHHHcCCCEEEech
Q 017718 291 D----VFKALALGASGIFIGR 307 (367)
Q Consensus 291 d----v~kal~lGAd~V~ig~ 307 (367)
+ +.+...+||.++.|--
T Consensus 86 ~v~~tv~~~~~aG~agi~IED 106 (238)
T PF13714_consen 86 NVARTVRELERAGAAGINIED 106 (238)
T ss_dssp HHHHHHHHHHHCT-SEEEEES
T ss_pred HHHHHHHHHHHcCCcEEEeec
Confidence 4 4455668999998843
|
... |
| >TIGR02317 prpB methylisocitrate lyase | Back alignment and domain information |
|---|
Probab=92.00 E-value=0.8 Score=44.02 Aligned_cols=83 Identities=22% Similarity=0.302 Sum_probs=59.2
Q ss_pred CCCEEEEecCCHHHHHHHHHcCCcEEEEcCCCCC----CCCCccchH----HHHHHHHHHhcCCCcEEEec--CCCCHHH
Q 017718 222 KLPILVKGVLTAEDARIAVQAGAAGIIVSNHGAR----QLDYVPATI----MALEEVVKATQGRIPVFLDG--GVRRGTD 291 (367)
Q Consensus 222 ~~Pv~vK~v~~~~~a~~~~~~G~d~i~vs~~gg~----~~~~~~~~~----~~l~~i~~~~~~~~~via~G--GI~~~~d 291 (367)
+.|+++-++-+.-.|+.+.++|.+++.+|+++=. ..|.+.-++ +.+.+|.+.+ ++||++|. |..++.+
T Consensus 12 ~~~l~~p~~~Da~SAri~e~aGf~Ai~~sg~~~a~~lG~pD~g~lt~~e~~~~~~~I~~~~--~iPviaD~d~GyG~~~~ 89 (285)
T TIGR02317 12 EDILQIPGAINAMAALLAERAGFEAIYLSGAAVAASLGLPDLGITTLDEVAEDARRITRVT--DLPLLVDADTGFGEAFN 89 (285)
T ss_pred CCcEEeCCCCCHHHHHHHHHcCCCEEEEcHHHHHHhCCCCCCCCCCHHHHHHHHHHHHhcc--CCCEEEECCCCCCCHHH
Confidence 4588888888999999999999999999875311 134333333 3345555544 79999964 8888888
Q ss_pred H----HHHHHcCCCEEEec
Q 017718 292 V----FKALALGASGIFIG 306 (367)
Q Consensus 292 v----~kal~lGAd~V~ig 306 (367)
+ .++..+||.++.|-
T Consensus 90 v~~tv~~~~~aG~agi~IE 108 (285)
T TIGR02317 90 VARTVREMEDAGAAAVHIE 108 (285)
T ss_pred HHHHHHHHHHcCCeEEEEe
Confidence 5 34555899998883
|
Members of this family are methylisocitrate lyase, also called (2S,3R)-3-hydroxybutane-1,2,3-tricarboxylate pyruvate-lyase. This enzyme acts in propionate metabolism. It cleaves a carbon-carbon bond to convert 2-methylisocitrate to pyruvate plus succinate. Some members of this family have been annotated, incorrectly it seems, as the related protein carboxyphosphoenolpyruvate phosphomutase, which is involved in synthesizing the antibiotic bialaphos in Streptomyces hygroscopicus. |
| >cd04739 DHOD_like Dihydroorotate dehydrogenase (DHOD) like proteins | Back alignment and domain information |
|---|
Probab=91.97 E-value=3.8 Score=40.04 Aligned_cols=183 Identities=21% Similarity=0.174 Sum_probs=95.9
Q ss_pred ccceEeCcccchhccCChhhHHHHHHHHHcCCcee---ecCCCCC------CH----HH----HHhhCCCceEEEEeecC
Q 017718 71 SMPIMIAPTAMQKMAHPEGEYATARAASAAGTIMT---LSSWSTS------SV----EE----VASTGPGIRFFQLYVYK 133 (367)
Q Consensus 71 ~~Pi~iAPm~~~~l~~~~~e~~~a~aa~~~G~~~~---vs~~~~~------~~----e~----i~~~~~~~~~~QLy~~~ 133 (367)
..|++++=+ +. .++.-..+++.+.++|+.+. +|..... .. .+ +.+...-|.++.|-+
T Consensus 99 ~~pvi~si~-g~---~~~~~~~~a~~~~~~gad~iElN~s~~~~~~~~~g~~~~~~~~eiv~~v~~~~~iPv~vKl~p-- 172 (325)
T cd04739 99 SIPVIASLN-GV---SAGGWVDYARQIEEAGADALELNIYALPTDPDISGAEVEQRYLDILRAVKSAVTIPVAVKLSP-- 172 (325)
T ss_pred CCeEEEEeC-CC---CHHHHHHHHHHHHhcCCCEEEEeCCCCCCCCCcccchHHHHHHHHHHHHHhccCCCEEEEcCC--
Confidence 568776633 22 22333578888888886554 2221110 11 12 222233578888753
Q ss_pred CHHHHHHHHHHHHHcCCcEEEEecCCCCCCchhHHhhhhcCCCCccccccccccccCccccccchhhHHHhhhccCcccc
Q 017718 134 DRNVVAQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLTLKNFQGLDLGKMDEANDSGLAAYVAGQIDRSLS 213 (367)
Q Consensus 134 d~~~~~~~l~ra~~~G~~ai~itvd~p~~g~r~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~ 213 (367)
+.+.+.++++.++++|+++++++--.+... -|..+.-..+ . ...++.. + ..-.+.
T Consensus 173 ~~~~~~~~a~~l~~~Gadgi~~~nt~~~~~---id~~~~~~~~-----~------------~glSG~~--~---~~~al~ 227 (325)
T cd04739 173 FFSALAHMAKQLDAAGADGLVLFNRFYQPD---IDLETLEVVP-----N------------LLLSSPA--E---IRLPLR 227 (325)
T ss_pred CccCHHHHHHHHHHcCCCeEEEEcCcCCCC---ccccccceec-----C------------CCcCCcc--c---hhHHHH
Confidence 333467788899999999998854432210 0110000000 0 0000000 0 001123
Q ss_pred HH-HHHhhcCCCEEEE-ecCCHHHHHHHHHcCCcEEEEcCCCCCC-CCCccchH-HHHHHHHHHhcCCCcEEEecCCCCH
Q 017718 214 WK-WLQTITKLPILVK-GVLTAEDARIAVQAGAAGIIVSNHGARQ-LDYVPATI-MALEEVVKATQGRIPVFLDGGVRRG 289 (367)
Q Consensus 214 ~~-~l~~~~~~Pv~vK-~v~~~~~a~~~~~~G~d~i~vs~~gg~~-~~~~~~~~-~~l~~i~~~~~~~~~via~GGI~~~ 289 (367)
|- .+++..++||+.- ++.+.+||.....+|||++-+. +. +..|+... +.+.++.+++. .-|+.+-
T Consensus 228 ~v~~v~~~~~ipIig~GGI~s~~Da~e~l~aGA~~Vqv~----ta~~~~gp~~~~~i~~~L~~~l~-------~~g~~~i 296 (325)
T cd04739 228 WIAILSGRVKASLAASGGVHDAEDVVKYLLAGADVVMTT----SALLRHGPDYIGTLLAGLEAWME-------EHGYESV 296 (325)
T ss_pred HHHHHHcccCCCEEEECCCCCHHHHHHHHHcCCCeeEEe----hhhhhcCchHHHHHHHHHHHHHH-------HcCCCCH
Confidence 32 5666678998854 4689999999999999999984 22 22344332 23444444331 3567777
Q ss_pred HHHHHH
Q 017718 290 TDVFKA 295 (367)
Q Consensus 290 ~dv~ka 295 (367)
.|+.-.
T Consensus 297 ~e~~G~ 302 (325)
T cd04739 297 QQLRGS 302 (325)
T ss_pred HHHhcc
Confidence 776543
|
DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences and cellular location. Members of class 1 are cytosolic enzymes and multimers while class 2 enzymes are membrane associated and monomeric. The class 1 enzymes can be further divided into subtypes 1A and 1B which are homodimers and heterotetrameric proteins, respectively. This subgroup has the conserved FMN binding site, but lacks some catalytic residues and may therefore be inactive. |
| >PRK11320 prpB 2-methylisocitrate lyase; Provisional | Back alignment and domain information |
|---|
Probab=91.78 E-value=0.88 Score=43.90 Aligned_cols=82 Identities=23% Similarity=0.360 Sum_probs=58.7
Q ss_pred CCCEEEEecCCHHHHHHHHHcCCcEEEEcCCCC--C---CCCCccchHH----HHHHHHHHhcCCCcEEEec--CCCCHH
Q 017718 222 KLPILVKGVLTAEDARIAVQAGAAGIIVSNHGA--R---QLDYVPATIM----ALEEVVKATQGRIPVFLDG--GVRRGT 290 (367)
Q Consensus 222 ~~Pv~vK~v~~~~~a~~~~~~G~d~i~vs~~gg--~---~~~~~~~~~~----~l~~i~~~~~~~~~via~G--GI~~~~ 290 (367)
+.|+++-++-+.-.|+.+.++|.++|.+|+++= . ..|.+.-+++ .+.+|.+.+ ++||++|. |..++.
T Consensus 16 ~~~l~~p~~~Da~SAri~e~~Gf~ai~~Sg~~~a~~~lG~PD~g~l~~~e~~~~~~~I~~~~--~iPviaD~d~GyG~~~ 93 (292)
T PRK11320 16 EKPLQIVGTINAYHALLAERAGFKAIYLSGGGVAAASLGLPDLGITTLDDVLIDVRRITDAC--DLPLLVDIDTGFGGAF 93 (292)
T ss_pred CCcEEecCCCCHHHHHHHHHcCCCEEEeCHHHHHhHhcCCCCCCCCCHHHHHHHHHHHHhcc--CCCEEEECCCCCCCHH
Confidence 568888888899999999999999999987431 1 1344443333 344445544 79999965 777888
Q ss_pred HH----HHHHHcCCCEEEe
Q 017718 291 DV----FKALALGASGIFI 305 (367)
Q Consensus 291 dv----~kal~lGAd~V~i 305 (367)
.+ .++...||.++.|
T Consensus 94 ~v~r~V~~~~~aGaagi~I 112 (292)
T PRK11320 94 NIARTVKSMIKAGAAAVHI 112 (292)
T ss_pred HHHHHHHHHHHcCCeEEEE
Confidence 86 3445589998888
|
|
| >TIGR00262 trpA tryptophan synthase, alpha subunit | Back alignment and domain information |
|---|
Probab=91.72 E-value=4.3 Score=38.37 Aligned_cols=36 Identities=36% Similarity=0.494 Sum_probs=31.1
Q ss_pred HHHHhhcCCCEEEEec-CCHHHHHHHHHcCCcEEEEc
Q 017718 215 KWLQTITKLPILVKGV-LTAEDARIAVQAGAAGIIVS 250 (367)
Q Consensus 215 ~~l~~~~~~Pv~vK~v-~~~~~a~~~~~~G~d~i~vs 250 (367)
+.+|+.++.||++-+. .++++++.+.++|+|++++.
T Consensus 191 ~~lr~~~~~pi~vgfGI~~~e~~~~~~~~GADgvVvG 227 (256)
T TIGR00262 191 KRLKAYSAKPVLVGFGISKPEQVKQAIDAGADGVIVG 227 (256)
T ss_pred HHHHhhcCCCEEEeCCCCCHHHHHHHHHcCCCEEEEC
Confidence 4888888899999775 46999999999999999983
|
Tryptophan synthase catalyzes the last step in the biosynthesis of tryptophan. The alpha chain is responsible for the aldol cleavage of indoleglycerol phosphate to indole and glyceraldehyde 3-phosphate. In bacteria and plants each domain is found on a separate subunit (alpha and beta chains), while in fungi the two domains are fused together on a single multifunctional protein. The signature pattern for trpA contains three conserved acidic residues. [LIVM]-E-[LIVM]-G-x(2)-[FYC]-[ST]-[DE]-[PA]-[LIVMY]-[AGLI]-[DE]-G and this is located between residues 43-58 of the model. The Sulfolobus solfataricus trpA is known to be quite divergent from other known trpA sequences. |
| >COG0434 SgcQ Predicted TIM-barrel enzyme [General function prediction only] | Back alignment and domain information |
|---|
Probab=91.65 E-value=0.55 Score=43.64 Aligned_cols=71 Identities=21% Similarity=0.366 Sum_probs=53.9
Q ss_pred CHHH-HHH-HHHcCCcEEEEcCCCCCCCCCccchHHHHHHHHHHhcCCCcEEEecCCCCHHHHHHHHHcCCCEEEechHH
Q 017718 232 TAED-ARI-AVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFIGRPV 309 (367)
Q Consensus 232 ~~~~-a~~-~~~~G~d~i~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~~~via~GGI~~~~dv~kal~lGAd~V~ig~~~ 309 (367)
+.++ ++. ....++|+++++|+. .+.++..+.|..+.+.. ++||++.+|+ +.+.+.+.|.. ||++.+|+.+
T Consensus 164 ~~~~~v~dtver~~aDaVI~tG~~----TG~~~d~~el~~a~~~~--~~pvlvGSGv-~~eN~~~~l~~-adG~IvgT~l 235 (263)
T COG0434 164 SLEEAVKDTVERGLADAVIVTGSR----TGSPPDLEELKLAKEAV--DTPVLVGSGV-NPENIEELLKI-ADGVIVGTSL 235 (263)
T ss_pred CHHHHHHHHHHccCCCEEEEeccc----CCCCCCHHHHHHHHhcc--CCCEEEecCC-CHHHHHHHHHH-cCceEEEEEE
Confidence 4443 344 566779999998732 25577888898888777 5999998887 56778888887 9999999966
Q ss_pred H
Q 017718 310 V 310 (367)
Q Consensus 310 l 310 (367)
=
T Consensus 236 K 236 (263)
T COG0434 236 K 236 (263)
T ss_pred c
Confidence 3
|
|
| >PRK03620 5-dehydro-4-deoxyglucarate dehydratase; Provisional | Back alignment and domain information |
|---|
Probab=91.49 E-value=14 Score=35.66 Aligned_cols=184 Identities=18% Similarity=0.128 Sum_probs=102.9
Q ss_pred cceEeCcccchhccCChhhHHHHHHHHHcCCceee--c---CCCCCCHHHHH-------hhCC--CceEEEEeecCCHHH
Q 017718 72 MPIMIAPTAMQKMAHPEGEYATARAASAAGTIMTL--S---SWSTSSVEEVA-------STGP--GIRFFQLYVYKDRNV 137 (367)
Q Consensus 72 ~Pi~iAPm~~~~l~~~~~e~~~a~aa~~~G~~~~v--s---~~~~~~~e~i~-------~~~~--~~~~~QLy~~~d~~~ 137 (367)
.|.++.|+.-.+-.+.++-..+.+...+.|+..++ | ++...+.||-. +... -|.+.++- . +-+.
T Consensus 12 ~~a~vTPf~~dg~iD~~~l~~li~~l~~~Gv~Gi~~~GstGE~~~Lt~eEr~~~~~~~~~~~~~~~pvi~gv~-~-~t~~ 89 (303)
T PRK03620 12 LSFPVTPFDADGSFDEAAYREHLEWLAPYGAAALFAAGGTGEFFSLTPDEYSQVVRAAVETTAGRVPVIAGAG-G-GTAQ 89 (303)
T ss_pred EEeeeCCCCCCCCcCHHHHHHHHHHHHHcCCCEEEECcCCcCcccCCHHHHHHHHHHHHHHhCCCCcEEEecC-C-CHHH
Confidence 46677887544434444445677777778876443 3 33556666522 2222 35666763 3 6667
Q ss_pred HHHHHHHHHHcCCcEEEEecCCCCCCchhHHhhhhcCCCCccccccccccccCccccccchhhHHHhhhccCccccHHHH
Q 017718 138 VAQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLTLKNFQGLDLGKMDEANDSGLAAYVAGQIDRSLSWKWL 217 (367)
Q Consensus 138 ~~~~l~ra~~~G~~ai~itvd~p~~g~r~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~l 217 (367)
+.++++.++++|++++.+.- |.. ...+ ..+..+ -++.+
T Consensus 90 ~i~~~~~a~~~Gadav~~~p--P~y-----------------~~~~-------------~~~i~~----------~f~~v 127 (303)
T PRK03620 90 AIEYAQAAERAGADGILLLP--PYL-----------------TEAP-------------QEGLAA----------HVEAV 127 (303)
T ss_pred HHHHHHHHHHhCCCEEEECC--CCC-----------------CCCC-------------HHHHHH----------HHHHH
Confidence 77889999999999998722 221 0000 000111 12366
Q ss_pred HhhcCCCEEEEec----CCHHHHHHHH-HcC-CcEEEEcCCCCCCCCCccchHHHHHHHHHHhcCCCcEEEecCCCC-HH
Q 017718 218 QTITKLPILVKGV----LTAEDARIAV-QAG-AAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRR-GT 290 (367)
Q Consensus 218 ~~~~~~Pv~vK~v----~~~~~a~~~~-~~G-~d~i~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~~~via~GGI~~-~~ 290 (367)
.+.+++||++=.. .+++...++. +.. +-+|--+ ......+.++.+..++++.|+ +| ..+ -.
T Consensus 128 a~~~~lpi~lYn~~g~~l~~~~l~~L~~~~pni~giK~s----------~~d~~~~~~~~~~~~~~f~vl-~G-~d~~e~ 195 (303)
T PRK03620 128 CKSTDLGVIVYNRDNAVLTADTLARLAERCPNLVGFKDG----------VGDIELMQRIVRALGDRLLYL-GG-LPTAEV 195 (303)
T ss_pred HHhCCCCEEEEcCCCCCCCHHHHHHHHhhCCCEEEEEeC----------CCCHHHHHHHHHHcCCCeEEE-eC-CCcchh
Confidence 6778899887643 4677777776 542 2222221 123445555655555455544 33 211 23
Q ss_pred HHHHHHHcCCCEEEechHHHH
Q 017718 291 DVFKALALGASGIFIGRPVVY 311 (367)
Q Consensus 291 dv~kal~lGAd~V~ig~~~l~ 311 (367)
-+..++.+||++...+..-++
T Consensus 196 ~~~~~~~~G~~G~is~~an~~ 216 (303)
T PRK03620 196 FAAAYLALGVPTYSSAVFNFV 216 (303)
T ss_pred hHHHHHhCCCCEEEecHHhhh
Confidence 345677899999988775543
|
|
| >PRK11572 copper homeostasis protein CutC; Provisional | Back alignment and domain information |
|---|
Probab=91.21 E-value=1.5 Score=41.24 Aligned_cols=73 Identities=26% Similarity=0.286 Sum_probs=52.3
Q ss_pred CCHHHHHHHHHcCCcEEEEcCCCCCCCCCccchHHHHHHHHHHhcCCCcEEE-----ecCCCCH--------HHHHHHHH
Q 017718 231 LTAEDARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFL-----DGGVRRG--------TDVFKALA 297 (367)
Q Consensus 231 ~~~~~a~~~~~~G~d~i~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~~~via-----~GGI~~~--------~dv~kal~ 297 (367)
.+.++|..|.+.|||-|-+... ....+-.|+...+..+++.+ ++||.+ .|++... .|+..+..
T Consensus 9 ~s~~~a~~A~~~GAdRiELc~~--L~~GGlTPS~g~i~~~~~~~--~ipv~vMIRPR~gdF~Ys~~E~~~M~~di~~~~~ 84 (248)
T PRK11572 9 YSMECALTAQQAGADRIELCAA--PKEGGLTPSLGVLKSVRERV--TIPVHPIIRPRGGDFCYSDGEFAAMLEDIATVRE 84 (248)
T ss_pred CCHHHHHHHHHcCCCEEEEccC--cCCCCcCCCHHHHHHHHHhc--CCCeEEEEecCCCCCCCCHHHHHHHHHHHHHHHH
Confidence 7899999999999999987431 11112246777788887766 688877 5555433 35666677
Q ss_pred cCCCEEEech
Q 017718 298 LGASGIFIGR 307 (367)
Q Consensus 298 lGAd~V~ig~ 307 (367)
+|||+|.+|-
T Consensus 85 ~GadGvV~G~ 94 (248)
T PRK11572 85 LGFPGLVTGV 94 (248)
T ss_pred cCCCEEEEee
Confidence 8999999994
|
|
| >PLN02535 glycolate oxidase | Back alignment and domain information |
|---|
Probab=91.15 E-value=1.6 Score=43.51 Aligned_cols=91 Identities=19% Similarity=0.313 Sum_probs=62.5
Q ss_pred cHHHHHhhcCCCEEEEecC------CHHHHHHHHHcCCcEEEEcC----CCCCC--------------CC----------
Q 017718 213 SWKWLQTITKLPILVKGVL------TAEDARIAVQAGAAGIIVSN----HGARQ--------------LD---------- 258 (367)
Q Consensus 213 ~~~~l~~~~~~Pv~vK~v~------~~~~a~~~~~~G~d~i~vs~----~gg~~--------------~~---------- 258 (367)
+++.+.+..+.|.+...-. +.+..+++.++|+.+|++.- .|.|. +.
T Consensus 114 slEeva~~~~~~~wfQlY~~~dr~~~~~ll~RA~~aG~~alvlTvD~p~~g~R~~d~r~~~~~p~~~~~~~~~~~~~~~~ 193 (364)
T PLN02535 114 TVEEVASSCNAVRFLQLYVYKRRDIAAQLVQRAEKNGYKAIVLTADVPRLGRREADIKNKMISPQLKNFEGLLSTEVVSD 193 (364)
T ss_pred CHHHHHhcCCCCeEEEEeccCCHHHHHHHHHHHHHcCCCEEEEeecCCCCCCchhhhhcCCCCcchhhHhhhhccCCCcc
Confidence 3456665555677777642 23457889999999999842 12110 00
Q ss_pred -------------CccchHHHHHHHHHHhcCCCcEEEecCCCCHHHHHHHHHcCCCEEEec
Q 017718 259 -------------YVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFIG 306 (367)
Q Consensus 259 -------------~~~~~~~~l~~i~~~~~~~~~via~GGI~~~~dv~kal~lGAd~V~ig 306 (367)
....+|+.|..+++.. ++|||+ .||.+++|+.++..+|+|+|.+.
T Consensus 194 ~~~~~~~~~~~~~~~~~tW~~i~~lr~~~--~~Pviv-KgV~~~~dA~~a~~~GvD~I~vs 251 (364)
T PLN02535 194 KGSGLEAFASETFDASLSWKDIEWLRSIT--NLPILI-KGVLTREDAIKAVEVGVAGIIVS 251 (364)
T ss_pred ccccHHHHHHhccCCCCCHHHHHHHHhcc--CCCEEE-ecCCCHHHHHHHHhcCCCEEEEe
Confidence 0123567777777655 789888 67999999999999999999885
|
|
| >PLN03033 2-dehydro-3-deoxyphosphooctonate aldolase; Provisional | Back alignment and domain information |
|---|
Probab=91.12 E-value=6.8 Score=37.51 Aligned_cols=83 Identities=28% Similarity=0.323 Sum_probs=52.1
Q ss_pred cCCCEEEEec--CCHHH----HHHHHHcCCcEEEEcCCCCCCCCCc--cchHHHHHHHHHHhcCCCcEEEe---------
Q 017718 221 TKLPILVKGV--LTAED----ARIAVQAGAAGIIVSNHGARQLDYV--PATIMALEEVVKATQGRIPVFLD--------- 283 (367)
Q Consensus 221 ~~~Pv~vK~v--~~~~~----a~~~~~~G~d~i~vs~~gg~~~~~~--~~~~~~l~~i~~~~~~~~~via~--------- 283 (367)
++.||.+|-- .++++ ++++...|-+-|++.-.|- .+... ...+..++.+++ . .+|||+|
T Consensus 129 tgkpV~lKkGq~~t~~e~~~aaeki~~~GN~~viLcERG~-tFgy~~lv~D~r~ip~mk~-~--~lPVI~DpSHsvQ~pg 204 (290)
T PLN03033 129 TGKIINIKKGQFCAPSVMRNSAEKVRLAGNPNVMVCERGT-MFGYNDLIVDPRNLEWMRE-A--NCPVVADITHSLQQPA 204 (290)
T ss_pred cCCeEEeCCCCCCCHHHHHHHHHHHHHcCCCcEEEEeCCC-CcCCCCcccchhhhHHHHh-c--CCCEEEeCCccccCCC
Confidence 5678888865 44554 6777888888888875553 33211 134455665543 3 6899985
Q ss_pred -----------cCCCCHH--HHHHHHHcCCCEEEech
Q 017718 284 -----------GGVRRGT--DVFKALALGASGIFIGR 307 (367)
Q Consensus 284 -----------GGI~~~~--dv~kal~lGAd~V~ig~ 307 (367)
||-|.-- =+..|+++|||++++=.
T Consensus 205 ~~~~~~~g~~s~G~Re~V~~larAAvA~GaDGlfiEv 241 (290)
T PLN03033 205 GKKLDGGGVASGGLRELIPCIARTAVAVGVDGIFMEV 241 (290)
T ss_pred cccccccCCCCCCCHHHHHHHHHHHHHhCCCEEEEEe
Confidence 3333322 23467789999999976
|
|
| >PF00701 DHDPS: Dihydrodipicolinate synthetase family; InterPro: IPR002220 Dihydropicolinate synthase (DHDPS) is the key enzyme in lysine biosynthesis via the diaminopimelate pathway of prokaryotes, some phycomycetes and higher plants | Back alignment and domain information |
|---|
Probab=91.12 E-value=14 Score=35.12 Aligned_cols=181 Identities=21% Similarity=0.244 Sum_probs=100.8
Q ss_pred ceEeCcccchhccCChhhHHHHHHHHHcCCceee--cC---CCCCCHHHHH-------hhCC--CceEEEEeecCCHHHH
Q 017718 73 PIMIAPTAMQKMAHPEGEYATARAASAAGTIMTL--SS---WSTSSVEEVA-------STGP--GIRFFQLYVYKDRNVV 138 (367)
Q Consensus 73 Pi~iAPm~~~~l~~~~~e~~~a~aa~~~G~~~~v--s~---~~~~~~e~i~-------~~~~--~~~~~QLy~~~d~~~~ 138 (367)
|.++.|+.-.+-.+.+.-..+.+-..+.|+...+ ++ +.+.+.+|-. +..+ -+.+.++- ..+-+.+
T Consensus 7 ~~~~TPf~~dg~id~~~~~~~i~~l~~~Gv~gl~~~GstGE~~~Lt~~Er~~l~~~~~~~~~~~~~vi~gv~-~~st~~~ 85 (289)
T PF00701_consen 7 PALITPFNADGSIDEDALKRLIDFLIEAGVDGLVVLGSTGEFYSLTDEERKELLEIVVEAAAGRVPVIAGVG-ANSTEEA 85 (289)
T ss_dssp EEE---BETTSSB-HHHHHHHHHHHHHTTSSEEEESSTTTTGGGS-HHHHHHHHHHHHHHHTTSSEEEEEEE-SSSHHHH
T ss_pred eeeeCCCCCCcCcCHHHHHHHHHHHHHcCCCEEEECCCCcccccCCHHHHHHHHHHHHHHccCceEEEecCc-chhHHHH
Confidence 4556676433333333444677777788876443 32 3345555422 2222 35677764 4567777
Q ss_pred HHHHHHHHHcCCcEEEEecCCCCCCchhHHhhhhcCCCCccccccccccccCccccccchhhHHHhhhccCccccH-HHH
Q 017718 139 AQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLTLKNFQGLDLGKMDEANDSGLAAYVAGQIDRSLSW-KWL 217 (367)
Q Consensus 139 ~~~l~ra~~~G~~ai~itvd~p~~g~r~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~-~~l 217 (367)
.++++.++++|++++.+.- |.. .... ...+ +.| +.+
T Consensus 86 i~~a~~a~~~Gad~v~v~~--P~~-----------------~~~s-------------~~~l-----------~~y~~~i 122 (289)
T PF00701_consen 86 IELARHAQDAGADAVLVIP--PYY-----------------FKPS-------------QEEL-----------IDYFRAI 122 (289)
T ss_dssp HHHHHHHHHTT-SEEEEEE--STS-----------------SSCC-------------HHHH-----------HHHHHHH
T ss_pred HHHHHHHhhcCceEEEEec--ccc-----------------ccch-------------hhHH-----------HHHHHHH
Confidence 8899999999999998743 321 0000 0001 122 366
Q ss_pred HhhcCCCEEEEec-------CCHHHHHHHHHcC-CcEEEEcCCCCCCCCCccchHHHHHHHHHHhcCCCcEEEecCCCCH
Q 017718 218 QTITKLPILVKGV-------LTAEDARIAVQAG-AAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRG 289 (367)
Q Consensus 218 ~~~~~~Pv~vK~v-------~~~~~a~~~~~~G-~d~i~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~~~via~GGI~~~ 289 (367)
.+.+++|+++=.. .+++...++.+.. +-+|..+ . .++..+.++.+....++.|+ .| +.
T Consensus 123 a~~~~~pi~iYn~P~~tg~~ls~~~l~~L~~~~nv~giK~s---------~-~~~~~~~~~~~~~~~~~~v~-~G---~d 188 (289)
T PF00701_consen 123 ADATDLPIIIYNNPARTGNDLSPETLARLAKIPNVVGIKDS---------S-GDLERLIQLLRAVGPDFSVF-CG---DD 188 (289)
T ss_dssp HHHSSSEEEEEEBHHHHSSTSHHHHHHHHHTSTTEEEEEES---------S-SBHHHHHHHHHHSSTTSEEE-ES---SG
T ss_pred HhhcCCCEEEEECCCccccCCCHHHHHHHhcCCcEEEEEcC---------c-hhHHHHHHHhhhcccCeeee-cc---cc
Confidence 6778999998765 3567777776632 2222221 1 12344445555555566554 44 44
Q ss_pred HHHHHHHHcCCCEEEechHHHH
Q 017718 290 TDVFKALALGASGIFIGRPVVY 311 (367)
Q Consensus 290 ~dv~kal~lGAd~V~ig~~~l~ 311 (367)
..+..++.+|+++++.+...++
T Consensus 189 ~~~~~~l~~G~~G~is~~~n~~ 210 (289)
T PF00701_consen 189 ELLLPALAAGADGFISGLANVF 210 (289)
T ss_dssp GGHHHHHHTTSSEEEESGGGTH
T ss_pred ccccccccccCCEEEEcccccC
Confidence 5578999999999999986543
|
The enzyme catalyses the condensation of L-aspartate-beta- semialdehyde and pyruvate to dihydropicolinic acid via a ping-pong mechanism in which pyruvate binds to the enzyme by forming a Schiff-base with a lysine residue []. Three other proteins are structurally related to DHDPS and probably also act via a similar catalytic mechanism. These are Escherichia coli N-acetylneuraminate lyase (4.1.3.3 from EC) (gene nanA), which catalyzes the condensation of N-acetyl-D-mannosamine and pyruvate to form N-acetylneuraminate; Rhizobium meliloti (Sinorhizobium meliloti) protein mosA [], which is involved in the biosynthesis of the rhizopine 3-o-methyl-scyllo-inosamine; and E. coli hypothetical protein yjhH. The sequences of DHDPS from different sources are well-conserved. The structure takes the form of a homotetramer, in which 2 monomers are related by an approximate 2-fold symmetry []. Each monomer comprises 2 domains: an 8-fold alpha-/beta-barrel, and a C-terminal alpha-helical domain. The fold resembles that of N-acetylneuraminate lyase. The active site lysine is located in the barrel domain, and has access via 2 channels on the C-terminal side of the barrel.; GO: 0016829 lyase activity, 0008152 metabolic process; PDB: 3B4U_B 3S8H_A 3QZE_B 1XXX_F 3L21_F 3IRD_A 3A5F_B 3G0S_B 3DAQ_C 3UQN_A .... |
| >TIGR01521 FruBisAldo_II_B fructose-bisphosphate aldolase, class II, Calvin cycle subtype | Back alignment and domain information |
|---|
Probab=90.98 E-value=5 Score=39.65 Aligned_cols=112 Identities=17% Similarity=0.236 Sum_probs=77.5
Q ss_pred CCHHHHHHHH-HcCCcEEEEcC---CCCCCCCCcc----chHHHHHHHHHHhcCCCcEEEecCCCCH-------------
Q 017718 231 LTAEDARIAV-QAGAAGIIVSN---HGARQLDYVP----ATIMALEEVVKATQGRIPVFLDGGVRRG------------- 289 (367)
Q Consensus 231 ~~~~~a~~~~-~~G~d~i~vs~---~gg~~~~~~~----~~~~~l~~i~~~~~~~~~via~GGI~~~------------- 289 (367)
.++++|+... +.|+|.+.++. ||-+.....| -.++.|.+|.+.++ ++|+..=||=..+
T Consensus 171 T~PeeA~~Fv~~TgvD~LAvaiGt~HG~Yk~~~~p~~~~Ld~~rL~eI~~~v~-~vPLVLHGgSG~p~~~~~~~~~~~~~ 249 (347)
T TIGR01521 171 TDPEEAADFVKKTKVDALAVAIGTSHGAYKFTRKPTGEVLAIQRIEEIHARLP-DTHLVMHGSSSVPQEWLDIINEYGGE 249 (347)
T ss_pred CCHHHHHHHHHHHCcCEEehhcccccCCcCCCCCCChhhcCHHHHHHHHccCC-CCCEEEeCCCCCchHhhHHHHhhccc
Confidence 5788887665 57999999874 5544221112 46788999988772 5999998875554
Q ss_pred ---------HHHHHHHHcCCCEEEechHHHHHhhc-------cCh------HHHHHHHHHHHHHHHHHHHHhCCCC
Q 017718 290 ---------TDVFKALALGASGIFIGRPVVYSLAA-------EGE------KGVRRVLEMLREEFELAMALSGCRS 343 (367)
Q Consensus 290 ---------~dv~kal~lGAd~V~ig~~~l~~l~~-------~G~------~~v~~~i~~l~~el~~~m~~~G~~s 343 (367)
+++.|++.+|..-|=++|-+..+... ..+ .-.....+.+++.++..|..+|...
T Consensus 250 ~~~~~g~p~e~i~~ai~~GI~KVNi~Tdl~~a~~~~~~~~~~~~~~~~d~~~~~~~~~~a~~~~v~~~i~~~gs~~ 325 (347)
T TIGR01521 250 IKETYGVPVEEIVEGIKYGVRKVNIDTDLRLASTAAFRRFAAQNPSEFDPRKFLKPTVEAMRDVCIARYEAFGTAG 325 (347)
T ss_pred ccccCCCCHHHHHHHHHCCCeeEEeChHHHHHHHHHHHHHHHhCCCcCCHHHHHHHHHHHHHHHHHHHHHHhCCCC
Confidence 88999999999999999976554211 111 1233445667788888888888653
|
Members of this family are class II examples of the enzyme fructose-bisphosphate aldolase, an enzyme both of glycolysis and (in the opposite direction) of the Calvin cycle of CO2 fixation. A deep split separates the tightly conserved yeast/E. coli/Mycobacterium subtype (all species lacking the Calvin cycle) represented by model TIGR01520 from a broader group of aldolases that includes both tagatose- and fructose-bisphosphate aldolases. This model represents a distinct, elongated, very well conserved subtype within the latter group. Most species with this aldolase subtype have the Calvin cycle. |
| >COG0042 tRNA-dihydrouridine synthase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=90.89 E-value=1.8 Score=42.36 Aligned_cols=83 Identities=20% Similarity=0.284 Sum_probs=55.1
Q ss_pred CceEEEEeecCCHHH--HHHHHHHHHHcCCcEEEEecCCCCCCchhHHhhhhcCCCCccccccccccccCccccccchhh
Q 017718 123 GIRFFQLYVYKDRNV--VAQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLTLKNFQGLDLGKMDEANDSGL 200 (367)
Q Consensus 123 ~~~~~QLy~~~d~~~--~~~~l~ra~~~G~~ai~itvd~p~~g~r~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~ 200 (367)
-|..+.+-.+.|... ..++++.++++|++++.||.-+...
T Consensus 137 iPVTVKiRlG~d~~~~~~~~ia~~~~~~g~~~ltVHgRtr~~-------------------------------------- 178 (323)
T COG0042 137 IPVTVKIRLGWDDDDILALEIARILEDAGADALTVHGRTRAQ-------------------------------------- 178 (323)
T ss_pred CCeEEEEecccCcccccHHHHHHHHHhcCCCEEEEecccHHh--------------------------------------
Confidence 356666655554443 5567777778888887776643221
Q ss_pred HHHhhhccCccccHH---HHHhhcC-CCEEEEec-CCHHHHHHHHH-cCCcEEEE
Q 017718 201 AAYVAGQIDRSLSWK---WLQTITK-LPILVKGV-LTAEDARIAVQ-AGAAGIIV 249 (367)
Q Consensus 201 ~~~~~~~~d~~~~~~---~l~~~~~-~Pv~vK~v-~~~~~a~~~~~-~G~d~i~v 249 (367)
+. ..+.+|+ .+|+..+ +||+.=+- .+.++|+...+ .|+|++.+
T Consensus 179 ----~y--~~~ad~~~I~~vk~~~~~ipvi~NGdI~s~~~a~~~l~~tg~DgVMi 227 (323)
T COG0042 179 ----GY--LGPADWDYIKELKEAVPSIPVIANGDIKSLEDAKEMLEYTGADGVMI 227 (323)
T ss_pred ----cC--CCccCHHHHHHHHHhCCCCeEEeCCCcCCHHHHHHHHHhhCCCEEEE
Confidence 00 1124676 6777777 89988764 78999988776 57999998
|
|
| >PRK09196 fructose-1,6-bisphosphate aldolase; Reviewed | Back alignment and domain information |
|---|
Probab=90.88 E-value=5.1 Score=39.56 Aligned_cols=112 Identities=14% Similarity=0.232 Sum_probs=77.0
Q ss_pred CCHHHHHHHH-HcCCcEEEEcC---CCCCCCCCcc----chHHHHHHHHHHhcCCCcEEEecCCC---------------
Q 017718 231 LTAEDARIAV-QAGAAGIIVSN---HGARQLDYVP----ATIMALEEVVKATQGRIPVFLDGGVR--------------- 287 (367)
Q Consensus 231 ~~~~~a~~~~-~~G~d~i~vs~---~gg~~~~~~~----~~~~~l~~i~~~~~~~~~via~GGI~--------------- 287 (367)
.++++|+... +.|+|.+-++. ||-+.....| -.++.|.+|++.++ ++|+..=||=.
T Consensus 173 T~PeeA~~Fv~~TgvD~LAvaiGT~HG~Yk~~~~p~~~~LdfdrL~eI~~~v~-~vPLVLHGgSG~~~~~~~~~~~~g~~ 251 (347)
T PRK09196 173 TDPEEAADFVKKTQVDALAIAIGTSHGAYKFTRKPTGDVLAIDRIKEIHARLP-NTHLVMHGSSSVPQELLDIINEYGGD 251 (347)
T ss_pred CCHHHHHHHHHHhCcCeEhhhhccccCCCCCCCCCChhhccHHHHHHHHhcCC-CCCEEEeCCCCCCHHHHHHHHHhcCC
Confidence 5788887765 68999999875 5544221112 36788999988773 58988866543
Q ss_pred -------CHHHHHHHHHcCCCEEEechHHHHHhhc-------cC------hHHHHHHHHHHHHHHHHHHHHhCCCC
Q 017718 288 -------RGTDVFKALALGASGIFIGRPVVYSLAA-------EG------EKGVRRVLEMLREEFELAMALSGCRS 343 (367)
Q Consensus 288 -------~~~dv~kal~lGAd~V~ig~~~l~~l~~-------~G------~~~v~~~i~~l~~el~~~m~~~G~~s 343 (367)
.-+++.|++.+|..-|=++|-+..+... .. ..-.....+.+++.++..|+.+|...
T Consensus 252 ~~~~~G~~~e~i~~ai~~GI~KINi~Tdl~~a~~~~i~~~~~~~~~~~d~~~~~~~~~~~~~~~v~~~i~~~gs~~ 327 (347)
T PRK09196 252 MPETYGVPVEEIQEGIKHGVRKVNIDTDLRLAMTGAIRRFLAENPSEFDPRKYLKPAMEAMKKICKARYEAFGTAG 327 (347)
T ss_pred ccccCCCCHHHHHHHHHCCCceEEeChHHHHHHHHHHHHHHHhCCCcCCHHHHHHHHHHHHHHHHHHHHHHhCCCC
Confidence 4477899999999999999977554321 01 11233445667888888899998653
|
|
| >PF03932 CutC: CutC family; InterPro: IPR005627 Copper transport in Escherichia coli is mediated by the products of at least six genes, cutA, cutB, cutC, cutD, cutE, and cutF | Back alignment and domain information |
|---|
Probab=90.66 E-value=1.4 Score=40.10 Aligned_cols=73 Identities=25% Similarity=0.333 Sum_probs=46.1
Q ss_pred CCHHHHHHHHHcCCcEEEEcCCCCCCCCCccchHHHHHHHHHHhcCCCcEEE-----ecCCCCH--------HHHHHHHH
Q 017718 231 LTAEDARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFL-----DGGVRRG--------TDVFKALA 297 (367)
Q Consensus 231 ~~~~~a~~~~~~G~d~i~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~~~via-----~GGI~~~--------~dv~kal~ 297 (367)
.+.+++..+.+.|||-|-+-.+ ....+-.|+...+..+++.. ++||.+ .|+.... +|+..+..
T Consensus 8 ~s~~~a~~A~~~GAdRiELc~~--l~~GGlTPS~g~i~~~~~~~--~ipv~vMIRpr~gdF~Ys~~E~~~M~~dI~~~~~ 83 (201)
T PF03932_consen 8 ESLEDALAAEAGGADRIELCSN--LEVGGLTPSLGLIRQAREAV--DIPVHVMIRPRGGDFVYSDEEIEIMKEDIRMLRE 83 (201)
T ss_dssp SSHHHHHHHHHTT-SEEEEEBT--GGGT-B---HHHHHHHHHHT--TSEEEEE--SSSS-S---HHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHcCCCEEEECCC--ccCCCcCcCHHHHHHHHhhc--CCceEEEECCCCCCccCCHHHHHHHHHHHHHHHH
Confidence 6899999999999999998542 11112246777888888766 788887 4444332 46667778
Q ss_pred cCCCEEEech
Q 017718 298 LGASGIFIGR 307 (367)
Q Consensus 298 lGAd~V~ig~ 307 (367)
+|||++.+|-
T Consensus 84 ~GadG~VfG~ 93 (201)
T PF03932_consen 84 LGADGFVFGA 93 (201)
T ss_dssp TT-SEEEE--
T ss_pred cCCCeeEEEe
Confidence 9999999994
|
A mutation in one or more of these genes results in an increased copper sensitivity. Members of this family are between 200 and 300 amino acids in length and are found in both eukaryotes and bacteria.; GO: 0005507 copper ion binding, 0055070 copper ion homeostasis; PDB: 2BDQ_A 3IWP_I 1X8C_B 1X7I_A 1TWD_B. |
| >PRK12309 transaldolase/EF-hand domain-containing protein; Provisional | Back alignment and domain information |
|---|
Probab=90.65 E-value=17 Score=36.63 Aligned_cols=88 Identities=14% Similarity=0.100 Sum_probs=61.3
Q ss_pred cCCCEEEEecCCHHHHHHHHHcCCcEEEEcCCCCCCCC-------------CccchHHHHHHHHHHhc---CCCcEEEec
Q 017718 221 TKLPILVKGVLTAEDARIAVQAGAAGIIVSNHGARQLD-------------YVPATIMALEEVVKATQ---GRIPVFLDG 284 (367)
Q Consensus 221 ~~~Pv~vK~v~~~~~a~~~~~~G~d~i~vs~~gg~~~~-------------~~~~~~~~l~~i~~~~~---~~~~via~G 284 (367)
-++++-+-.+.+.+.|..+.++|++.|... =||-.+ ..-+....+.+|.+..+ .+..|++ .
T Consensus 153 ~GI~~n~TlvFS~~QA~aaaeAGa~~ISPf--VgRi~dw~~~~~g~~~~~~~~dpGv~~v~~i~~~~~~~~~~T~Im~-A 229 (391)
T PRK12309 153 EGIHCNLTLLFGFHQAIACAEAGVTLISPF--VGRILDWYKKETGRDSYPGAEDPGVQSVTQIYNYYKKFGYKTEVMG-A 229 (391)
T ss_pred CCCceeeeeecCHHHHHHHHHcCCCEEEee--cchhhhhhhhccCCCccccccchHHHHHHHHHHHHHhcCCCcEEEe-c
Confidence 388998888999999999999999988763 232111 11124445556655442 2455555 4
Q ss_pred CCCCHHHHHHHHHcCCCEEEechHHHHHh
Q 017718 285 GVRRGTDVFKALALGASGIFIGRPVVYSL 313 (367)
Q Consensus 285 GI~~~~dv~kal~lGAd~V~ig~~~l~~l 313 (367)
.+|+..++.+ .+|||.+-|.-.++..+
T Consensus 230 SfRn~~~v~~--laG~d~~Ti~p~ll~~L 256 (391)
T PRK12309 230 SFRNIGEIIE--LAGCDLLTISPKLLEQL 256 (391)
T ss_pred ccCCHHHHHH--HHCCCeeeCCHHHHHHH
Confidence 5999999998 47999999987776554
|
|
| >PRK11572 copper homeostasis protein CutC; Provisional | Back alignment and domain information |
|---|
Probab=90.53 E-value=6.5 Score=37.03 Aligned_cols=67 Identities=21% Similarity=0.340 Sum_probs=42.0
Q ss_pred HHHHHHHHcCCcEEEEcCCCCCCCCCccchHHHHHHHHHHhcCCCcEEEecCCCCHHHHHHHHHcCCCEEEec
Q 017718 234 EDARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFIG 306 (367)
Q Consensus 234 ~~a~~~~~~G~d~i~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~~~via~GGI~~~~dv~kal~lGAd~V~ig 306 (367)
+..+.+.+.|++.|-.|| |. .......+.|.++.+..++.+ |++-|||+ .+.+.+....|+..+=..
T Consensus 132 ~al~~l~~lG~~rILTSG--g~--~~a~~g~~~L~~lv~~a~~~~-Im~GgGV~-~~Nv~~l~~tG~~~~H~s 198 (248)
T PRK11572 132 NALKQLADLGVARILTSG--QQ--QDAEQGLSLIMELIAASDGPI-IMAGAGVR-LSNLHKFLDAGVREVHSS 198 (248)
T ss_pred HHHHHHHHcCCCEEECCC--CC--CCHHHHHHHHHHHHHhcCCCE-EEeCCCCC-HHHHHHHHHcCCCEEeeC
Confidence 345678999999987754 32 112233455666655544334 66666765 566777778999877543
|
|
| >COG0352 ThiE Thiamine monophosphate synthase [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=90.48 E-value=10 Score=34.83 Aligned_cols=35 Identities=23% Similarity=0.482 Sum_probs=31.5
Q ss_pred HHHhhcCCCEEEEecCCHHHHHHHHHcCCcEEEEc
Q 017718 216 WLQTITKLPILVKGVLTAEDARIAVQAGAAGIIVS 250 (367)
Q Consensus 216 ~l~~~~~~Pv~vK~v~~~~~a~~~~~~G~d~i~vs 250 (367)
++++...+|++.-+..+.+.+..+.++|+++|.+.
T Consensus 152 ~~~~~~~iP~vAIGGi~~~nv~~v~~~Ga~gVAvv 186 (211)
T COG0352 152 EIRELVNIPVVAIGGINLENVPEVLEAGADGVAVV 186 (211)
T ss_pred HHHHhCCCCEEEEcCCCHHHHHHHHHhCCCeEEeh
Confidence 67777779999999999999999999999999984
|
|
| >cd04726 KGPDC_HPS 3-Keto-L-gulonate 6-phosphate decarboxylase (KGPDC) and D-arabino-3-hexulose-6-phosphate synthase (HPS) | Back alignment and domain information |
|---|
Probab=90.43 E-value=2.5 Score=37.80 Aligned_cols=83 Identities=25% Similarity=0.199 Sum_probs=55.1
Q ss_pred HHHHhh-cCCCEEE--EecCC-HHHHHHHHHcCCcEEEEcCCCCCCCCCccch-HHHHHHHHHHhcCCCcEEEe-cCCCC
Q 017718 215 KWLQTI-TKLPILV--KGVLT-AEDARIAVQAGAAGIIVSNHGARQLDYVPAT-IMALEEVVKATQGRIPVFLD-GGVRR 288 (367)
Q Consensus 215 ~~l~~~-~~~Pv~v--K~v~~-~~~a~~~~~~G~d~i~vs~~gg~~~~~~~~~-~~~l~~i~~~~~~~~~via~-GGI~~ 288 (367)
+.+++. .++|+++ |.... ...++.+.++|+|+|+++... .+.. .+.+..+++ . .++++++ =+..|
T Consensus 45 ~~i~~~~~~~~i~~~~~v~~~~~~~~~~~~~aGad~i~~h~~~------~~~~~~~~i~~~~~-~--g~~~~v~~~~~~t 115 (202)
T cd04726 45 RALREAFPDKIIVADLKTADAGALEAEMAFKAGADIVTVLGAA------PLSTIKKAVKAAKK-Y--GKEVQVDLIGVED 115 (202)
T ss_pred HHHHHHCCCCEEEEEEEeccccHHHHHHHHhcCCCEEEEEeeC------CHHHHHHHHHHHHH-c--CCeEEEEEeCCCC
Confidence 466665 4788877 43322 245788999999999994311 1111 223333332 2 5777765 77999
Q ss_pred HHHHHHHHHcCCCEEEec
Q 017718 289 GTDVFKALALGASGIFIG 306 (367)
Q Consensus 289 ~~dv~kal~lGAd~V~ig 306 (367)
+.++.+++..|+|.|.++
T Consensus 116 ~~e~~~~~~~~~d~v~~~ 133 (202)
T cd04726 116 PEKRAKLLKLGVDIVILH 133 (202)
T ss_pred HHHHHHHHHCCCCEEEEc
Confidence 999999888999999885
|
KGPDC catalyzes the formation of L-xylulose 5-phosphate and carbon dioxide from 3-keto-L-gulonate 6-phosphate as part of the anaerobic pathway for L-ascorbate utilization in some eubacteria. HPS catalyzes the formation of D-arabino-3-hexulose-6-phosphate from D-ribulose 5-phosphate and formaldehyde in microorganisms that can use formaldehyde as a carbon source. Both catalyze reactions that involve the Mg2+-assisted formation and stabilization of 1,2-enediolate reaction intermediates. |
| >TIGR02319 CPEP_Pphonmut carboxyvinyl-carboxyphosphonate phosphorylmutase | Back alignment and domain information |
|---|
Probab=90.34 E-value=0.97 Score=43.66 Aligned_cols=83 Identities=20% Similarity=0.308 Sum_probs=58.9
Q ss_pred CCCEEEEecCCHHHHHHHHHcCCcEEEEcCCCCC-----CCCCccchH----HHHHHHHHHhcCCCcEEEec--CCCCHH
Q 017718 222 KLPILVKGVLTAEDARIAVQAGAAGIIVSNHGAR-----QLDYVPATI----MALEEVVKATQGRIPVFLDG--GVRRGT 290 (367)
Q Consensus 222 ~~Pv~vK~v~~~~~a~~~~~~G~d~i~vs~~gg~-----~~~~~~~~~----~~l~~i~~~~~~~~~via~G--GI~~~~ 290 (367)
+.|+++-++-+.-.|+.+.++|.+++.+|+++.. ..|.+.-++ +.+.+|.+.+ ++||++|. |..+..
T Consensus 15 ~~~l~~p~v~Da~SArl~e~aGf~ai~~sg~~~~as~lG~pD~g~l~~~e~~~~~~~I~~~~--~lPv~aD~dtGyG~~~ 92 (294)
T TIGR02319 15 PEILVVPSAYDALSAKVIQQAGFPAVHMTGSGTSASMLGLPDLGFTSVSEQAINAKNIVLAV--DVPVIMDADAGYGNAM 92 (294)
T ss_pred CCcEEeecCcCHHHHHHHHHcCCCEEEecHHHHHHHHcCCCCcCCCCHHHHHHHHHHHHhcc--CCCEEEECCCCCCCcH
Confidence 4688888888999999999999999999764321 134444333 3344555544 79999965 777777
Q ss_pred HH----HHHHHcCCCEEEec
Q 017718 291 DV----FKALALGASGIFIG 306 (367)
Q Consensus 291 dv----~kal~lGAd~V~ig 306 (367)
++ .++...||.++.|-
T Consensus 93 ~v~r~V~~~~~aGaagi~IE 112 (294)
T TIGR02319 93 SVWRATREFERVGIVGYHLE 112 (294)
T ss_pred HHHHHHHHHHHcCCeEEEEE
Confidence 75 45556899999883
|
This family consists of carboxyvinyl-carboxyphosphonate phosphorylmutase (CPEP phosphonomutase), an unusual enzyme involved in the biosynthesis of the antibiotic bialaphos. So far, it is known only in that pathway and only in Streptomyces hygroscopicus. Some related proteins annotated as being functionally equivalent are likely misannotated examples of methylisocitrate lyase, an enzyme of priopionate utilization. |
| >PRK13399 fructose-1,6-bisphosphate aldolase; Provisional | Back alignment and domain information |
|---|
Probab=90.34 E-value=5.8 Score=39.21 Aligned_cols=112 Identities=14% Similarity=0.252 Sum_probs=76.8
Q ss_pred CCHHHHHHHH-HcCCcEEEEcC---CCCCCCCCcc----chHHHHHHHHHHhcCCCcEEEecCCCCH-------------
Q 017718 231 LTAEDARIAV-QAGAAGIIVSN---HGARQLDYVP----ATIMALEEVVKATQGRIPVFLDGGVRRG------------- 289 (367)
Q Consensus 231 ~~~~~a~~~~-~~G~d~i~vs~---~gg~~~~~~~----~~~~~l~~i~~~~~~~~~via~GGI~~~------------- 289 (367)
.++++|.... +.|+|.+-++. ||-+.....| -.++.|.+|.+.+. ++|+..=||=..+
T Consensus 173 T~PeeA~~Fv~~TgvD~LAvaiGt~HG~Yk~~~~p~~~~L~~drl~eI~~~v~-~vPLVLHGgSGvp~~~~~~~~~~g~~ 251 (347)
T PRK13399 173 TDPDQAVDFVQRTGVDALAIAIGTSHGAYKFTRKPDGDILAIDRIEEIHARLP-NTHLVMHGSSSVPQELQEIINAYGGK 251 (347)
T ss_pred CCHHHHHHHHHHHCcCEEhhhhccccCCcCCCCCCChhhccHHHHHHHHhhcC-CCCEEEeCCCCCCHHHHHHHHHhcCC
Confidence 5788887766 57999999874 5544221112 35778999988772 5999998765544
Q ss_pred ---------HHHHHHHHcCCCEEEechHHHHHhhc-------cC------hHHHHHHHHHHHHHHHHHHHHhCCCC
Q 017718 290 ---------TDVFKALALGASGIFIGRPVVYSLAA-------EG------EKGVRRVLEMLREEFELAMALSGCRS 343 (367)
Q Consensus 290 ---------~dv~kal~lGAd~V~ig~~~l~~l~~-------~G------~~~v~~~i~~l~~el~~~m~~~G~~s 343 (367)
+++.|++.+|-.-|=++|-+..+... .. ..-.....+.+++-++..|+.+|...
T Consensus 252 ~~~~~g~~~e~~~kai~~GI~KINi~Tdl~~a~~~~~~~~~~~~~~~~d~~~~~~~~~~a~~~~v~~~i~l~gs~~ 327 (347)
T PRK13399 252 MKETYGVPVEEIQRGIKHGVRKVNIDTDIRLAMTGAIRKVLAEHPSEFDPRKALKPAMKAMTALCKQRFEAFGTAG 327 (347)
T ss_pred ccccCCCCHHHHHHHHHCCCeEEEeChHHHHHHHHHHHHHHHhCCCcCCHHHHHHHHHHHHHHHHHHHHHHhCCCC
Confidence 88999999999999999976544221 11 01233444567777888888888654
|
|
| >COG3142 CutC Uncharacterized protein involved in copper resistance [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=90.28 E-value=4.9 Score=37.28 Aligned_cols=121 Identities=17% Similarity=0.295 Sum_probs=72.0
Q ss_pred eecCCHHHHHHHHHHHHHcCCcEEEEecCCCCCCchhHHhhhhcCCCCccccccccccccCccccccchhhHHHhhhccC
Q 017718 130 YVYKDRNVVAQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLTLKNFQGLDLGKMDEANDSGLAAYVAGQID 209 (367)
Q Consensus 130 y~~~d~~~~~~~l~ra~~~G~~ai~itvd~p~~g~r~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d 209 (367)
|...+.+.+.+-++.++++|++++++.+-++-
T Consensus 67 Y~~~E~~iM~~DI~~~~~lG~~GVV~G~lt~d------------------------------------------------ 98 (241)
T COG3142 67 YSDDELEIMLEDIRLARELGVQGVVLGALTAD------------------------------------------------ 98 (241)
T ss_pred cChHHHHHHHHHHHHHHHcCCCcEEEeeecCC------------------------------------------------
Confidence 43344567888889999999999987543221
Q ss_pred ccccH---HHHHh-hcCCCEEEEec----CCH-HHHHHHHHcCCcEEEEcCCCCCCCCCccchHHHHHHHHHHhcCCCcE
Q 017718 210 RSLSW---KWLQT-ITKLPILVKGV----LTA-EDARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPV 280 (367)
Q Consensus 210 ~~~~~---~~l~~-~~~~Pv~vK~v----~~~-~~a~~~~~~G~d~i~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~~~v 280 (367)
..++- +.|.+ ..+++|..--- .++ +..+.+.+.|+.-|-. |||. ....-..+.|.++.+..++++.|
T Consensus 99 g~iD~~~le~Li~aA~gL~vTFHrAFD~~~d~~~ale~li~~Gv~RILT--sGg~--~sa~eg~~~l~~li~~a~gri~I 174 (241)
T COG3142 99 GNIDMPRLEKLIEAAGGLGVTFHRAFDECPDPLEALEQLIELGVERILT--SGGK--ASALEGLDLLKRLIEQAKGRIII 174 (241)
T ss_pred CccCHHHHHHHHHHccCCceeeehhhhhcCCHHHHHHHHHHCCCcEEec--CCCc--CchhhhHHHHHHHHHHhcCCEEE
Confidence 11111 12222 22455554432 334 4467899999998876 4553 23333445566666655668888
Q ss_pred EEecCCCCHHHHHHH-HHcCCCEE
Q 017718 281 FLDGGVRRGTDVFKA-LALGASGI 303 (367)
Q Consensus 281 ia~GGI~~~~dv~ka-l~lGAd~V 303 (367)
++-|||+. +.+... ...|+.-+
T Consensus 175 m~GaGV~~-~N~~~l~~~tg~~e~ 197 (241)
T COG3142 175 MAGAGVRA-ENIAELVLLTGVTEV 197 (241)
T ss_pred EeCCCCCH-HHHHHHHHhcCchhh
Confidence 88778764 556655 45776543
|
|
| >COG1954 GlpP Glycerol-3-phosphate responsive antiterminator (mRNA-binding) [Transcription] | Back alignment and domain information |
|---|
Probab=90.15 E-value=1.2 Score=39.37 Aligned_cols=60 Identities=22% Similarity=0.251 Sum_probs=46.5
Q ss_pred HHHHHHcCCcEEEEcCCCCCCCCCccchHHHHHHHHHHhcCCCcEEEecCCCCHHHHHHHHHcCCCEEEec
Q 017718 236 ARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFIG 306 (367)
Q Consensus 236 a~~~~~~G~d~i~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~~~via~GGI~~~~dv~kal~lGAd~V~ig 306 (367)
...+.+.++|+|-+ +.+ -....+.++.+.. ..|||+-|=|++-+|+..||..||-+|.-.
T Consensus 114 ~~~i~~~~pD~iEv-------LPG--v~Pkvi~~i~~~t--~~piIAGGLi~t~Eev~~Al~aGA~avSTs 173 (181)
T COG1954 114 IKQIEKSEPDFIEV-------LPG--VMPKVIKEITEKT--HIPIIAGGLIETEEEVREALKAGAVAVSTS 173 (181)
T ss_pred HHHHHHcCCCEEEE-------cCc--ccHHHHHHHHHhc--CCCEEeccccccHHHHHHHHHhCcEEEeec
Confidence 45566799999988 222 2334566666655 799999999999999999999999998644
|
|
| >PF00218 IGPS: Indole-3-glycerol phosphate synthase; InterPro: IPR013798 Indole-3-glycerol phosphate synthase (4 | Back alignment and domain information |
|---|
Probab=89.79 E-value=2 Score=40.58 Aligned_cols=70 Identities=26% Similarity=0.339 Sum_probs=49.8
Q ss_pred HHHHHHHHcCCcEEEEcCCCCCCCCCccchHHHHHHHHHHhcCCCcEEEecCCCCHHHHHHHHHcCCCEEEechHH
Q 017718 234 EDARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFIGRPV 309 (367)
Q Consensus 234 ~~a~~~~~~G~d~i~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~~~via~GGI~~~~dv~kal~lGAd~V~ig~~~ 309 (367)
+.|+...++||++|.|-. ....-..+++.|..+++.+ ++||..--=|-++.++.++-.+|||+|.+=-.+
T Consensus 72 ~~a~~y~~~GA~aiSVlT----e~~~F~Gs~~dL~~v~~~~--~~PvL~KDFIid~~QI~eA~~~GADaVLLI~~~ 141 (254)
T PF00218_consen 72 EIAKAYEEAGAAAISVLT----EPKFFGGSLEDLRAVRKAV--DLPVLRKDFIIDPYQIYEARAAGADAVLLIAAI 141 (254)
T ss_dssp HHHHHHHHTT-SEEEEE------SCCCHHHHHHHHHHHHHS--SS-EEEES---SHHHHHHHHHTT-SEEEEEGGG
T ss_pred HHHHHHHhcCCCEEEEEC----CCCCCCCCHHHHHHHHHHh--CCCcccccCCCCHHHHHHHHHcCCCEeehhHHh
Confidence 558889999999999842 1112234778888888877 799999888999999999999999999875544
|
1.1.48 from EC) (IGPS) catalyses the fourth step in the biosynthesis of tryptophan, the ring closure of 1-(2-carboxy-phenylamino)-1-deoxyribulose into indol-3-glycerol-phosphate. In some bacteria, IGPS is a single chain enzyme. In others, such as Escherichia coli, it is the N-terminal domain of a bifunctional enzyme that also catalyses N-(5'-phosphoribosyl)anthranilate isomerase (5.3.1.24 from EC) (PRAI) activity (see IPR001240 from INTERPRO), the third step of tryptophan biosynthesis. In fungi, IGPS is the central domain of a trifunctional enzyme that contains a PRAI C-terminal domain and a glutamine amidotransferase (2.4.2 from EC) (GATase) N-terminal domain (see IPR000991 from INTERPRO). A structure of the IGPS domain of the bifunctional enzyme from the mesophilic bacterium E. coli (eIGPS) has been compared with the monomeric indole-3-glycerol phosphate synthase from the hyperthermophilic archaeon Sulfolobus solfataricus (sIGPS). Both are single-domain (beta/alpha)8 barrel proteins, with one (eIGPS) or two (sIGPS) additional helices inserted before the first beta strand []. ; GO: 0004425 indole-3-glycerol-phosphate synthase activity; PDB: 1VC4_A 1PII_A 1JCM_P 1I4N_B 1J5T_A 3TSM_B 4FB7_A 3QJA_A 1JUL_A 2C3Z_A .... |
| >TIGR03569 NeuB_NnaB N-acetylneuraminate synthase | Back alignment and domain information |
|---|
Probab=89.75 E-value=8.3 Score=37.89 Aligned_cols=72 Identities=15% Similarity=0.194 Sum_probs=54.0
Q ss_pred hhcCCCEEEEecCCHHHHHHHHHcCCcEEEEcCCCCCCCCCccchHHHHHHHHHHhcCCCcEEEecCCCCHHHHHHHHH-
Q 017718 219 TITKLPILVKGVLTAEDARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALA- 297 (367)
Q Consensus 219 ~~~~~Pv~vK~v~~~~~a~~~~~~G~d~i~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~~~via~GGI~~~~dv~kal~- 297 (367)
+..+++++ -...+.+.+..+.+.|++.+-|.. .-...+.+|..+.+. ..|||.+-|..+-+++..++.
T Consensus 86 ~~~Gi~~~-stpfd~~svd~l~~~~v~~~KIaS-------~~~~n~pLL~~~A~~---gkPvilStGmatl~Ei~~Av~~ 154 (329)
T TIGR03569 86 ESKGIEFL-STPFDLESADFLEDLGVPRFKIPS-------GEITNAPLLKKIARF---GKPVILSTGMATLEEIEAAVGV 154 (329)
T ss_pred HHhCCcEE-EEeCCHHHHHHHHhcCCCEEEECc-------ccccCHHHHHHHHhc---CCcEEEECCCCCHHHHHHHHHH
Confidence 34577774 466889999999999999999832 123356677777552 689999999999999988775
Q ss_pred ---cCCC
Q 017718 298 ---LGAS 301 (367)
Q Consensus 298 ---lGAd 301 (367)
.|.+
T Consensus 155 i~~~G~~ 161 (329)
T TIGR03569 155 LRDAGTP 161 (329)
T ss_pred HHHcCCC
Confidence 3664
|
This family is a subset of the Pfam model pfam03102 and is believed to include only authentic NeuB N-acetylneuraminate (sialic acid) synthase enzymes. The majority of the genes identified by this model are observed adjacent to both the NeuA and NeuC genes which together effect the biosynthesis of CMP-N-acetylneuraminate from UDP-N-acetylglucosamine. |
| >PRK04147 N-acetylneuraminate lyase; Provisional | Back alignment and domain information |
|---|
Probab=89.69 E-value=20 Score=34.39 Aligned_cols=180 Identities=16% Similarity=0.125 Sum_probs=101.3
Q ss_pred cceEeCcccchhccCChhhHHHHHHHHH-cCCcee--ec---CCCCCCHHHHH-------hhCC--CceEEEEeecCCHH
Q 017718 72 MPIMIAPTAMQKMAHPEGEYATARAASA-AGTIMT--LS---SWSTSSVEEVA-------STGP--GIRFFQLYVYKDRN 136 (367)
Q Consensus 72 ~Pi~iAPm~~~~l~~~~~e~~~a~aa~~-~G~~~~--vs---~~~~~~~e~i~-------~~~~--~~~~~QLy~~~d~~ 136 (367)
.|.++.|+.-.+-.+.++-..+.+-+.+ .|+..+ .+ ++.+.+.||-. +..+ -+.++++- ..+-+
T Consensus 8 ~~a~~TPf~~dg~iD~~~~~~li~~l~~~~Gv~gi~v~GstGE~~~Ls~eEr~~~~~~~~~~~~~~~~viagvg-~~~t~ 86 (293)
T PRK04147 8 YAALLTPFDEDGQIDEQGLRRLVRFNIEKQGIDGLYVGGSTGEAFLLSTEEKKQVLEIVAEEAKGKVKLIAQVG-SVNTA 86 (293)
T ss_pred eeeeECcCCCCCCcCHHHHHHHHHHHHhcCCCCEEEECCCccccccCCHHHHHHHHHHHHHHhCCCCCEEecCC-CCCHH
Confidence 3666778754444444555577777777 886543 23 33456666532 2222 35666764 34566
Q ss_pred HHHHHHHHHHHcCCcEEEEecCCCCCCchhHHhhhhcCCCCccccccccccccCccccccchhhHHHhhhccCccccHHH
Q 017718 137 VVAQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLTLKNFQGLDLGKMDEANDSGLAAYVAGQIDRSLSWKW 216 (367)
Q Consensus 137 ~~~~~l~ra~~~G~~ai~itvd~p~~g~r~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~ 216 (367)
...++++.|++.|++++.+.. |.. .++ + ...+.+ -++.
T Consensus 87 ~ai~~a~~a~~~Gad~v~v~~--P~y------------~~~--~----------------~~~l~~----------~f~~ 124 (293)
T PRK04147 87 EAQELAKYATELGYDAISAVT--PFY------------YPF--S----------------FEEICD----------YYRE 124 (293)
T ss_pred HHHHHHHHHHHcCCCEEEEeC--CcC------------CCC--C----------------HHHHHH----------HHHH
Confidence 677888999999999998732 221 000 0 000111 1235
Q ss_pred HHhhcCCCEEEEec-------CCHHHHHHHHHcC-CcEEEEcCCCCCCCCCccchHHHHHHHHHHhcCCCcEEEecCCCC
Q 017718 217 LQTITKLPILVKGV-------LTAEDARIAVQAG-AAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRR 288 (367)
Q Consensus 217 l~~~~~~Pv~vK~v-------~~~~~a~~~~~~G-~d~i~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~~~via~GGI~~ 288 (367)
+.+.+++||++=.. .+++...++.+.. +-+|.-+ . ..+..+.++.+..+ +..| .+| +
T Consensus 125 va~a~~lPv~iYn~P~~tg~~l~~~~l~~L~~~pnvvgiK~s---------~-~d~~~~~~~~~~~~-~~~v-~~G---~ 189 (293)
T PRK04147 125 IIDSADNPMIVYNIPALTGVNLSLDQFNELFTLPKVIGVKQT---------A-GDLYQLERIRKAFP-DKLI-YNG---F 189 (293)
T ss_pred HHHhCCCCEEEEeCchhhccCCCHHHHHHHhcCCCEEEEEeC---------C-CCHHHHHHHHHhCC-CCEE-EEe---e
Confidence 66667899988764 4567777776532 2222221 1 13344445554443 4444 344 2
Q ss_pred HHHHHHHHHcCCCEEEechHH
Q 017718 289 GTDVFKALALGASGIFIGRPV 309 (367)
Q Consensus 289 ~~dv~kal~lGAd~V~ig~~~ 309 (367)
..-++..+.+|+++++.+..-
T Consensus 190 d~~~~~~l~~G~~G~is~~~n 210 (293)
T PRK04147 190 DEMFASGLLAGADGAIGSTYN 210 (293)
T ss_pred hHHHHHHHHcCCCEEEechhh
Confidence 345677888999999877643
|
|
| >cd00957 Transaldolase_TalAB Transaldolases including both TalA and TalB | Back alignment and domain information |
|---|
Probab=89.58 E-value=3.1 Score=40.55 Aligned_cols=90 Identities=13% Similarity=0.135 Sum_probs=63.0
Q ss_pred cCCCEEEEecCCHHHHHHHHHcCCcEEEEcCCCCCCCCC-------------ccchHHHHHHHHHHh---cCCCcEEEec
Q 017718 221 TKLPILVKGVLTAEDARIAVQAGAAGIIVSNHGARQLDY-------------VPATIMALEEVVKAT---QGRIPVFLDG 284 (367)
Q Consensus 221 ~~~Pv~vK~v~~~~~a~~~~~~G~d~i~vs~~gg~~~~~-------------~~~~~~~l~~i~~~~---~~~~~via~G 284 (367)
-++++-+-.+.+.+.+..+.++|++.|... =||-.|+ .-+-...+.++.+.. +.+..|+ ..
T Consensus 147 ~GI~vn~TlvFS~~Qa~~aa~AGa~~ISPf--VgRi~d~~~~~~~~~~~~~~~d~Gv~~v~~i~~~~~~~~~~T~vm-aA 223 (313)
T cd00957 147 EGIHCNLTLLFSFAQAVACAEAGVTLISPF--VGRILDWYKKHSGDKAYTAEEDPGVASVKKIYNYYKKFGYKTKVM-GA 223 (313)
T ss_pred CCCceeeeeecCHHHHHHHHHcCCCEEEee--cchHHHhhhhccccccCCccCCcHHHHHHHHHHHHHHcCCCcEEE-ec
Confidence 389999989999999999999999988763 1221111 113444555555443 2244455 45
Q ss_pred CCCCHHHHHHHHHcCCCEEEechHHHHHhhc
Q 017718 285 GVRRGTDVFKALALGASGIFIGRPVVYSLAA 315 (367)
Q Consensus 285 GI~~~~dv~kal~lGAd~V~ig~~~l~~l~~ 315 (367)
.+|+..++.+ .+|+|.+-+.-.++..+..
T Consensus 224 SfRn~~~v~~--laG~d~~Ti~p~ll~~L~~ 252 (313)
T cd00957 224 SFRNIGQILA--LAGCDYLTISPALLEELKN 252 (313)
T ss_pred ccCCHHHHHH--HhCCCeEEcCHHHHHHHHh
Confidence 6999999997 5799999999888776643
|
The enzyme catalyses the reversible transfer of a dyhydroxyacetone moiety, derived from fructose-6-phosphate to erythrose-4-phosphate yielding sedoheptulose-7-phosphate and glyceraldehyde-3-phosphate. The catalytic mechanism is similar to other class I aldolases. The enzyme is found in the non-oxidative branch of the pentose phosphate pathway and forms a dimer in solution. |
| >PRK00278 trpC indole-3-glycerol-phosphate synthase; Reviewed | Back alignment and domain information |
|---|
Probab=89.53 E-value=2 Score=40.60 Aligned_cols=71 Identities=21% Similarity=0.245 Sum_probs=54.2
Q ss_pred HHHHHHHHHcCCcEEEEcCCCCCCCCCccchHHHHHHHHHHhcCCCcEEEecCCCCHHHHHHHHHcCCCEEEechHH
Q 017718 233 AEDARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFIGRPV 309 (367)
Q Consensus 233 ~~~a~~~~~~G~d~i~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~~~via~GGI~~~~dv~kal~lGAd~V~ig~~~ 309 (367)
.+.|+...++||++|.+..... .-....+.|..+++.+ ++||+.--=|..+.++..+..+|||+|.+.-..
T Consensus 73 ~~~A~~~~~~GA~aisvlte~~----~f~g~~~~l~~v~~~v--~iPvl~kdfi~~~~qi~~a~~~GAD~VlLi~~~ 143 (260)
T PRK00278 73 VEIAKAYEAGGAACLSVLTDER----FFQGSLEYLRAARAAV--SLPVLRKDFIIDPYQIYEARAAGADAILLIVAA 143 (260)
T ss_pred HHHHHHHHhCCCeEEEEecccc----cCCCCHHHHHHHHHhc--CCCEEeeeecCCHHHHHHHHHcCCCEEEEEecc
Confidence 4668899999999998843211 1112367777887776 799998777889999999999999999887544
|
|
| >cd00377 ICL_PEPM Members of the ICL/PEPM enzyme family catalyze either P-C or C-C bond formation/cleavage | Back alignment and domain information |
|---|
Probab=89.52 E-value=1.5 Score=41.01 Aligned_cols=82 Identities=28% Similarity=0.356 Sum_probs=56.5
Q ss_pred CCCEEEEecCCHHHHHHHHHcCCcEEEEcCCCCC----CCCCccchHHH----HHHHHHHhcCCCcEEEecCC--CCHHH
Q 017718 222 KLPILVKGVLTAEDARIAVQAGAAGIIVSNHGAR----QLDYVPATIMA----LEEVVKATQGRIPVFLDGGV--RRGTD 291 (367)
Q Consensus 222 ~~Pv~vK~v~~~~~a~~~~~~G~d~i~vs~~gg~----~~~~~~~~~~~----l~~i~~~~~~~~~via~GGI--~~~~d 291 (367)
+.|+++=++-+.-.|+.+.++|+|+|.+++++.. ..|.+..+++. +..|.+.. .+||++|+.. .+..+
T Consensus 8 ~~~i~~~~~~D~~sA~~~e~~G~~ai~~s~~~~~~s~G~pD~~~~~~~e~~~~~~~I~~~~--~~Pv~~D~~~G~g~~~~ 85 (243)
T cd00377 8 GGPLVLPGAWDALSARLAERAGFKAIYTSGAGVAASLGLPDGGLLTLDEVLAAVRRIARAV--DLPVIADADTGYGNALN 85 (243)
T ss_pred CCcEEecCCCCHHHHHHHHHcCCCEEEeccHHHHHhcCCCCCCcCCHHHHHHHHHHHHhhc--cCCEEEEcCCCCCCHHH
Confidence 5688888888889999999999999999875432 13444444433 33444433 7999998755 34344
Q ss_pred H----HHHHHcCCCEEEe
Q 017718 292 V----FKALALGASGIFI 305 (367)
Q Consensus 292 v----~kal~lGAd~V~i 305 (367)
+ .+.+..|+++|.|
T Consensus 86 ~~~~v~~~~~~G~~gv~i 103 (243)
T cd00377 86 VARTVRELEEAGAAGIHI 103 (243)
T ss_pred HHHHHHHHHHcCCEEEEE
Confidence 4 3445589999999
|
Known members are phosphoenolpyruvate mutase (PEPM), phosphonopyruvate hydrolase (PPH), carboxyPEP mutase (CPEP mutase), oxaloacetate hydrolase (OAH), isocitrate lyase (ICL), and 2-methylisocitrate lyase (MICL). Isocitrate lyase (ICL) catalyzes the conversion of isocitrate to succinate and glyoxylate, the first committed step in the glyoxylate pathway. This carbon-conserving pathway is present in most prokaryotes, lower eukaryotes and plants, but has not been observed in vertebrates. PEP mutase (PEPM) turns phosphoenolpyruvate (PEP) into phosphonopyruvate (P-pyr), an important intermediate in the formation of organophosphonates, which function as antibiotics or play a role in pathogenesis or signaling. P-pyr can be hydrolyzed by phosphonopyruvate hydrolase (PPH) to from pyruvate and phosphate. Oxaloacetate acetylhydrolase (OAH) catalyzes the hydrolytic cleavage of oxaloacetate to |
| >PTZ00411 transaldolase-like protein; Provisional | Back alignment and domain information |
|---|
Probab=89.40 E-value=4.1 Score=40.06 Aligned_cols=91 Identities=15% Similarity=0.220 Sum_probs=63.8
Q ss_pred cCCCEEEEecCCHHHHHHHHHcCCcEEEEcCCCCCCCCC-------------ccchHHHHHHHHHHhc--CCCcEEEecC
Q 017718 221 TKLPILVKGVLTAEDARIAVQAGAAGIIVSNHGARQLDY-------------VPATIMALEEVVKATQ--GRIPVFLDGG 285 (367)
Q Consensus 221 ~~~Pv~vK~v~~~~~a~~~~~~G~d~i~vs~~gg~~~~~-------------~~~~~~~l~~i~~~~~--~~~~via~GG 285 (367)
-++++-+-.+.+...|..+.++|++.|... =||-.|+ +.+-...+.++.+..+ +--..|....
T Consensus 159 eGI~~N~TlvFS~~QA~aaaeAGa~~ISPf--VGRi~d~~~~~~~~~~~~~~~~~Gv~~v~~i~~~~k~~g~~T~Im~AS 236 (333)
T PTZ00411 159 EGIHCNLTLLFSFAQAVACAQAGVTLISPF--VGRILDWYKKPEKAESYVGAQDPGVISVTKIYNYYKKHGYKTIVMGAS 236 (333)
T ss_pred CCCceeEeEecCHHHHHHHHHcCCCEEEee--cchHHHhcccccccccccccCCchHHHHHHHHHHHHHcCCCeEEEecc
Confidence 389999889999999999999999988763 1221111 2344455556655442 2234555567
Q ss_pred CCCHHHHHHHHHcCCCEEEechHHHHHhhc
Q 017718 286 VRRGTDVFKALALGASGIFIGRPVVYSLAA 315 (367)
Q Consensus 286 I~~~~dv~kal~lGAd~V~ig~~~l~~l~~ 315 (367)
+|+..++.+ .+|||.+-+.-.++-.+..
T Consensus 237 fRn~~qi~~--laG~D~lTi~p~ll~~L~~ 264 (333)
T PTZ00411 237 FRNTGEILE--LAGCDKLTISPKLLEELAN 264 (333)
T ss_pred cCCHHHHHH--HHCCCEEeCCHHHHHHHHh
Confidence 999999997 3899999999888776543
|
|
| >KOG2550 consensus IMP dehydrogenase/GMP reductase [Nucleotide transport and metabolism] | Back alignment and domain information |
|---|
Probab=89.39 E-value=1.6 Score=43.71 Aligned_cols=248 Identities=17% Similarity=0.216 Sum_probs=127.4
Q ss_pred HhccccceeeccccC-CCCCCccceeE-cCeeeccceEeCcccchhccCChhhHHHHHHHHHcCCceeecCCCCCCHHHH
Q 017718 40 RNAFSRILFRPRILI-DVSKIDMNTTV-LGFKISMPIMIAPTAMQKMAHPEGEYATARAASAAGTIMTLSSWSTSSVEEV 117 (367)
Q Consensus 40 ~~~~~~i~l~pr~l~-~~~~vd~st~i-~g~~l~~Pi~iAPm~~~~l~~~~~e~~~a~aa~~~G~~~~vs~~~~~~~e~i 117 (367)
.-.|+++.|+|.... ..++||+++.+ +..+++.|++-|||--.+ |..+|.+.+.+|..-.+. -++++|+-
T Consensus 29 ~LtynDfliLPg~idF~s~eVsL~t~ltr~itl~tPlvsSpMDTVt------es~MAiaMAl~ggIg~IH--hNctpe~Q 100 (503)
T KOG2550|consen 29 GLTYNDFLILPGFIDFASDEVSLQTKLTRNITLNTPLVSSPMDTVT------ESEMAIAMALLGGIGFIH--HNCTPEDQ 100 (503)
T ss_pred CccccceeecccccccccccceeehhhhhcccccCceeccCCcccc------hhHHHHHHHhcCCceeee--cCCCHHHH
Confidence 357899999997763 45689999886 568899999999995543 778999999888665553 35566653
Q ss_pred Hhh----C--CCceEEEEeecCCHHHHHHHHHHHHHcCCcEEEEecCCCCCCch-----hHHhh--hhcCC--CCccccc
Q 017718 118 AST----G--PGIRFFQLYVYKDRNVVAQLVRRAERAGFKAIALTVDTPRLGRR-----EADIK--NRFTL--PPFLTLK 182 (367)
Q Consensus 118 ~~~----~--~~~~~~QLy~~~d~~~~~~~l~ra~~~G~~ai~itvd~p~~g~r-----~~~~~--~~~~~--p~~~~~~ 182 (367)
+.. . .+.+.-+-..-.....+-+.++.=+..||..+-+|-|.-..++- .||+. +.-.. ..-++..
T Consensus 101 A~~v~~vK~~~~g~~~~p~v~sp~~tvg~v~~~k~~~gF~g~pvTe~g~~~~KLvG~vtsrdi~f~~~~~~~~~~vmt~~ 180 (503)
T KOG2550|consen 101 ADMVRRVKNYENGFINNPIVISPTTTVGEVKEAKEKHGFSGIPVTEDGKRGSKLVGIITSRDIQFLEDNSLLVSDVMTKN 180 (503)
T ss_pred HHHHHHHHHhhcccccCCcccCCcccchhhhhhcccccccccccccCCcccceeEEEEehhhhhhhhcccchhhhhcccc
Confidence 321 1 01111000000011112223333334677776666442221100 01110 00000 0000000
Q ss_pred cccccccCccccccchhhHHHhhhccC---------ccc-c---HHHHHhhcCCCEEEEec----------C----CHHH
Q 017718 183 NFQGLDLGKMDEANDSGLAAYVAGQID---------RSL-S---WKWLQTITKLPILVKGV----------L----TAED 235 (367)
Q Consensus 183 ~~~~~~~~~~~~~~~~~~~~~~~~~~d---------~~~-~---~~~l~~~~~~Pv~vK~v----------~----~~~~ 235 (367)
..... +.-......+.+.+... ..+ . -..|+++-+-|+.-|.. . +.+.
T Consensus 181 ~~~~~-----~gi~l~~~neiL~~~kkGkl~iv~~~gelva~~~rtDl~k~~~yPlask~~~kqll~gAaiGTre~dK~r 255 (503)
T KOG2550|consen 181 PVTGA-----QGITLKEANEILKKIKKGKLPVVDDKGELVAMLSRTDLMKNRDYPLASKDSTKQLLCGAAIGTRDDDKER 255 (503)
T ss_pred ccccc-----ccccHHHHHHHHHhhhcCCcceeccCCceeeeeehhhhhhhcCCCccccCcccceeeeeccccccchhHH
Confidence 00000 00000000000000000 000 0 01333434445544432 1 2344
Q ss_pred HHHHHHcCCcEEEEcCCCCCCCCCccchHHHHHHHHHHhcCCCcEEEecCCCCHHHHHHHHHcCCCEEEec
Q 017718 236 ARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFIG 306 (367)
Q Consensus 236 a~~~~~~G~d~i~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~~~via~GGI~~~~dv~kal~lGAd~V~ig 306 (367)
...+.++|+|.|++...-|. ..-.++.+..|++..+ +++||+ |.+-+.+.+...+..|||++=+|
T Consensus 256 l~ll~~aGvdvviLDSSqGn----S~~qiemik~iK~~yP-~l~Via-GNVVT~~qa~nLI~aGaDgLrVG 320 (503)
T KOG2550|consen 256 LDLLVQAGVDVVILDSSQGN----SIYQLEMIKYIKETYP-DLQIIA-GNVVTKEQAANLIAAGADGLRVG 320 (503)
T ss_pred HHHhhhcCCcEEEEecCCCc----chhHHHHHHHHHhhCC-Cceeec-cceeeHHHHHHHHHccCceeEec
Confidence 67889999999999653331 2235567777777654 677877 88999999999999999986555
|
|
| >cd06557 KPHMT-like Ketopantoate hydroxymethyltransferase (KPHMT) is the first enzyme in the pantothenate biosynthesis pathway | Back alignment and domain information |
|---|
Probab=89.38 E-value=12 Score=35.37 Aligned_cols=80 Identities=19% Similarity=0.261 Sum_probs=47.1
Q ss_pred HHHhhcCCCEEEEec------CCHHH----HHHHHH-cCCcEEEEcCCCCCCCCCccchHHHHHHHHHHhcCCCcEE---
Q 017718 216 WLQTITKLPILVKGV------LTAED----ARIAVQ-AGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVF--- 281 (367)
Q Consensus 216 ~l~~~~~~Pv~vK~v------~~~~~----a~~~~~-~G~d~i~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~~~vi--- 281 (367)
.+++..+.|+++-.. .++++ +.++.+ +|+++|.+-+ | . +....|+..+...+||+
T Consensus 66 ~V~r~~~~p~viaD~~fg~y~~~~~~av~~a~r~~~~aGa~aVkiEd--~------~---~~~~~I~al~~agipV~gHi 134 (254)
T cd06557 66 AVRRGAPRALVVADMPFGSYQTSPEQALRNAARLMKEAGADAVKLEG--G------A---EVAETIRALVDAGIPVMGHI 134 (254)
T ss_pred HHHhcCCCCeEEEeCCCCcccCCHHHHHHHHHHHHHHhCCeEEEEcC--c------H---HHHHHHHHHHHcCCCeeccc
Confidence 566667889666543 12443 455666 9999999832 2 1 33333333333368888
Q ss_pred --------EecCCC----CH-------HHHHHHHHcCCCEEEec
Q 017718 282 --------LDGGVR----RG-------TDVFKALALGASGIFIG 306 (367)
Q Consensus 282 --------a~GGI~----~~-------~dv~kal~lGAd~V~ig 306 (367)
..||.+ +. +++..+..+||+++.+=
T Consensus 135 GL~pq~~~~~gg~~~~grt~~~a~~~i~ra~a~~~AGA~~i~lE 178 (254)
T cd06557 135 GLTPQSVNQLGGYKVQGKTEEEAERLLEDALALEEAGAFALVLE 178 (254)
T ss_pred cccceeeeccCCceeccCCHHHHHHHHHHHHHHHHCCCCEEEEc
Confidence 567653 33 33334445899999874
|
Ketopantoate hydroxymethyltransferase (KPHMT) catalyzes the first committed step in the biosynthesis of pantothenate (vitamin B5), which is a precursor to coenzyme A and is required for penicillin biosynthesis. |
| >PF05690 ThiG: Thiazole biosynthesis protein ThiG; InterPro: IPR008867 This family consists of several bacterial thiazole biosynthesis protein G sequences | Back alignment and domain information |
|---|
Probab=89.36 E-value=2.3 Score=39.63 Aligned_cols=37 Identities=24% Similarity=0.448 Sum_probs=28.8
Q ss_pred cHHHHHhhcCCCEEEEe-cCCHHHHHHHHHcCCcEEEE
Q 017718 213 SWKWLQTITKLPILVKG-VLTAEDARIAVQAGAAGIIV 249 (367)
Q Consensus 213 ~~~~l~~~~~~Pv~vK~-v~~~~~a~~~~~~G~d~i~v 249 (367)
.++.+++..++||||-- +.++.+|..+.|.|+|++-+
T Consensus 166 ~l~~i~~~~~vPvIvDAGiG~pSdaa~AMElG~daVLv 203 (247)
T PF05690_consen 166 NLRIIIERADVPVIVDAGIGTPSDAAQAMELGADAVLV 203 (247)
T ss_dssp HHHHHHHHGSSSBEEES---SHHHHHHHHHTT-SEEEE
T ss_pred HHHHHHHhcCCcEEEeCCCCCHHHHHHHHHcCCceeeh
Confidence 34577777899999864 57899999999999999987
|
ThiG, together with ThiF and ThiH, is proposed to be involved in the synthesis of 4-methyl-5-(b-hydroxyethyl)thiazole (THZ) which is an intermediate in the thiazole production pathway [].; GO: 0009228 thiamine biosynthetic process; PDB: 1WV2_B 1TYG_C 1XM3_B 2HTM_C 2YZR_C. |
| >cd02911 arch_FMN Archeal FMN-binding domain | Back alignment and domain information |
|---|
Probab=89.36 E-value=4 Score=37.95 Aligned_cols=38 Identities=32% Similarity=0.309 Sum_probs=30.2
Q ss_pred cHHHHHhh-cCCCEEEEe-cCCHHHHHHHHHcCCcEEEEc
Q 017718 213 SWKWLQTI-TKLPILVKG-VLTAEDARIAVQAGAAGIIVS 250 (367)
Q Consensus 213 ~~~~l~~~-~~~Pv~vK~-v~~~~~a~~~~~~G~d~i~vs 250 (367)
+|+.+++. .++||+.=+ +.+.++++.+.+.|+|+|.+.
T Consensus 181 d~~~I~~i~~~ipVIgnGgI~s~eda~~~l~~GaD~VmiG 220 (233)
T cd02911 181 DLKKIRDISTELFIIGNNSVTTIESAKEMFSYGADMVSVA 220 (233)
T ss_pred cHHHHHHhcCCCEEEEECCcCCHHHHHHHHHcCCCEEEEc
Confidence 57766655 578987644 578999999999999999983
|
This family of archaeal proteins are part of the NAD(P)H-dependent flavin oxidoreductase (oxidored) FMN-binding family that reduce a range of alternative electron acceptors. Most use FAD/FMN as a cofactor and NAD(P)H as electron donor. Some contain 4Fe-4S cluster to transfer electron from FAD to FMN. The specific function of this group is unknown. |
| >TIGR00737 nifR3_yhdG putative TIM-barrel protein, nifR3 family | Back alignment and domain information |
|---|
Probab=89.23 E-value=3.7 Score=39.90 Aligned_cols=34 Identities=21% Similarity=0.660 Sum_probs=28.5
Q ss_pred HHHhhcCCCEEEEe-cCCHHHHHHHH-HcCCcEEEE
Q 017718 216 WLQTITKLPILVKG-VLTAEDARIAV-QAGAAGIIV 249 (367)
Q Consensus 216 ~l~~~~~~Pv~vK~-v~~~~~a~~~~-~~G~d~i~v 249 (367)
.+++..++||+.=+ +.+.+++..+. +.|+|++.+
T Consensus 186 ~i~~~~~ipvi~nGgI~~~~da~~~l~~~gad~Vmi 221 (319)
T TIGR00737 186 RVKQAVRIPVIGNGDIFSPEDAKAMLETTGCDGVMI 221 (319)
T ss_pred HHHHcCCCcEEEeCCCCCHHHHHHHHHhhCCCEEEE
Confidence 67777889998766 47899999888 688999988
|
Members of this family show a distant relationship to alpha/beta (TIM) barrel enzymes such as dihydroorotate dehydrogenase and glycolate oxidase. |
| >PRK07455 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional | Back alignment and domain information |
|---|
Probab=89.19 E-value=3.8 Score=36.80 Aligned_cols=65 Identities=15% Similarity=0.076 Sum_probs=47.4
Q ss_pred HHHHHHHHcCCcEEEEcCCCCCCCCCccchHHHHHHHHHHhcCCCcEEEecCCCCHHHHHHHHHcCCCEEEech
Q 017718 234 EDARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFIGR 307 (367)
Q Consensus 234 ~~a~~~~~~G~d~i~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~~~via~GGI~~~~dv~kal~lGAd~V~ig~ 307 (367)
+.++.+.+.|++.|-+.. ..+...+.+..+.+.. ..-.+..|-+.+.+++-.|+++|||+|.++.
T Consensus 28 ~~~~~~~~~Gv~~vqlr~-------k~~~~~e~~~~~~~~~--~~~~~g~gtvl~~d~~~~A~~~gAdgv~~p~ 92 (187)
T PRK07455 28 QMAEAVAAGGMRLIEITW-------NSDQPAELISQLREKL--PECIIGTGTILTLEDLEEAIAAGAQFCFTPH 92 (187)
T ss_pred HHHHHHHHCCCCEEEEeC-------CCCCHHHHHHHHHHhC--CCcEEeEEEEEcHHHHHHHHHcCCCEEECCC
Confidence 347788899999998843 2234566676665543 3444667889999999999999999995554
|
|
| >PRK13111 trpA tryptophan synthase subunit alpha; Provisional | Back alignment and domain information |
|---|
Probab=89.10 E-value=8 Score=36.62 Aligned_cols=35 Identities=34% Similarity=0.356 Sum_probs=29.5
Q ss_pred HHHHhhcCCCEEEEec-CCHHHHHHHHHcCCcEEEEc
Q 017718 215 KWLQTITKLPILVKGV-LTAEDARIAVQAGAAGIIVS 250 (367)
Q Consensus 215 ~~l~~~~~~Pv~vK~v-~~~~~a~~~~~~G~d~i~vs 250 (367)
+.+|+..++||++... .+.++++.+.+. ||+++|.
T Consensus 193 ~~vk~~~~~pv~vGfGI~~~e~v~~~~~~-ADGviVG 228 (258)
T PRK13111 193 ARLKAHTDLPVAVGFGISTPEQAAAIAAV-ADGVIVG 228 (258)
T ss_pred HHHHhcCCCcEEEEcccCCHHHHHHHHHh-CCEEEEc
Confidence 4888888999999764 588999999886 9999994
|
|
| >COG2022 ThiG Uncharacterized enzyme of thiazole biosynthesis [Nucleotide transport and metabolism] | Back alignment and domain information |
|---|
Probab=89.07 E-value=4.8 Score=37.44 Aligned_cols=95 Identities=23% Similarity=0.367 Sum_probs=55.1
Q ss_pred CHHHHHHHHHHHHHcCCcEEEEecCCCCCCchhHHhhhhcCCCCccccccccccccCccccccchhhHHHhhhccCcccc
Q 017718 134 DRNVVAQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLTLKNFQGLDLGKMDEANDSGLAAYVAGQIDRSLS 213 (367)
Q Consensus 134 d~~~~~~~l~ra~~~G~~ai~itvd~p~~g~r~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~ 213 (367)
|+-.+.+..+...+.||..+--+-|-|+..+|-.|.--..-+|-+- .-+++.+ ......
T Consensus 115 D~~etl~Aae~Lv~eGF~VlPY~~dD~v~arrLee~GcaavMPl~a---------------PIGSg~G------~~n~~~ 173 (262)
T COG2022 115 DPIETLKAAEQLVKEGFVVLPYTTDDPVLARRLEEAGCAAVMPLGA---------------PIGSGLG------LQNPYN 173 (262)
T ss_pred ChHHHHHHHHHHHhCCCEEeeccCCCHHHHHHHHhcCceEeccccc---------------cccCCcC------cCCHHH
Confidence 3344444455555667777776666666666554442111122110 0011100 011113
Q ss_pred HHHHHhhcCCCEEEE-ecCCHHHHHHHHHcCCcEEEE
Q 017718 214 WKWLQTITKLPILVK-GVLTAEDARIAVQAGAAGIIV 249 (367)
Q Consensus 214 ~~~l~~~~~~Pv~vK-~v~~~~~a~~~~~~G~d~i~v 249 (367)
++.+++..++||+|- ++.++.+|..+.|.|+|++-+
T Consensus 174 l~iiie~a~VPviVDAGiG~pSdAa~aMElG~DaVL~ 210 (262)
T COG2022 174 LEIIIEEADVPVIVDAGIGTPSDAAQAMELGADAVLL 210 (262)
T ss_pred HHHHHHhCCCCEEEeCCCCChhHHHHHHhcccceeeh
Confidence 457777889999985 457899999999999999876
|
|
| >PRK05269 transaldolase B; Provisional | Back alignment and domain information |
|---|
Probab=89.05 E-value=24 Score=34.57 Aligned_cols=89 Identities=16% Similarity=0.149 Sum_probs=63.5
Q ss_pred cCCCEEEEecCCHHHHHHHHHcCCcEEEEcCCCCCCCC-------------CccchHHHHHHHHHHh---cCCCcEEEec
Q 017718 221 TKLPILVKGVLTAEDARIAVQAGAAGIIVSNHGARQLD-------------YVPATIMALEEVVKAT---QGRIPVFLDG 284 (367)
Q Consensus 221 ~~~Pv~vK~v~~~~~a~~~~~~G~d~i~vs~~gg~~~~-------------~~~~~~~~l~~i~~~~---~~~~~via~G 284 (367)
-++++-+-.+.+.+.+..+.++|++.|... =||-.| .+.+....+.++.+.. +.+..|++.
T Consensus 149 ~GI~vn~TlvFs~~Qa~~aa~AGa~~ISPf--VgRi~d~~~~~~~~~~~~~~~~~Gv~~v~~i~~~~k~~~~~t~im~A- 225 (318)
T PRK05269 149 EGINCNLTLLFSFAQARACAEAGVFLISPF--VGRILDWYKKNTGKKEYAPAEDPGVVSVTKIYNYYKKHGYKTVVMGA- 225 (318)
T ss_pred cCCceeEeEecCHHHHHHHHHcCCCEEEee--ccHHHHHhhhcccccccCcCCCcHHHHHHHHHHHHHHcCCCceEEee-
Confidence 388998888999999999999999988763 122111 1234455555555443 235566664
Q ss_pred CCCCHHHHHHHHHcCCCEEEechHHHHHhh
Q 017718 285 GVRRGTDVFKALALGASGIFIGRPVVYSLA 314 (367)
Q Consensus 285 GI~~~~dv~kal~lGAd~V~ig~~~l~~l~ 314 (367)
.+|+..++.+ ..|+|.|-+.-.++..+.
T Consensus 226 Sfrn~~~v~~--laG~d~vTi~p~ll~~l~ 253 (318)
T PRK05269 226 SFRNTGQILE--LAGCDRLTISPALLEELA 253 (318)
T ss_pred ccCCHHHHHH--HhCCCeEECCHHHHHHHH
Confidence 6999999997 569999998888877665
|
|
| >TIGR03586 PseI pseudaminic acid synthase | Back alignment and domain information |
|---|
Probab=89.02 E-value=24 Score=34.60 Aligned_cols=116 Identities=19% Similarity=0.210 Sum_probs=59.9
Q ss_pred hcCCCEEEEecC-CHHH----HHHHHHcCCcEEEEcCCCCCCCCC--ccchHHHHHHHHHHhcCCCcEEEecCCCCH--H
Q 017718 220 ITKLPILVKGVL-TAED----ARIAVQAGAAGIIVSNHGARQLDY--VPATIMALEEVVKATQGRIPVFLDGGVRRG--T 290 (367)
Q Consensus 220 ~~~~Pv~vK~v~-~~~~----a~~~~~~G~d~i~vs~~gg~~~~~--~~~~~~~l~~i~~~~~~~~~via~GGI~~~--~ 290 (367)
.+++||++|..+ +.++ +..+.+.|..-|++- |.-+.... ....+..++.+++.. .+||-.+. ++. .
T Consensus 132 ~~gkPvilstG~~t~~Ei~~Av~~i~~~g~~~i~Ll-hC~s~YP~~~~~~nL~~i~~lk~~f--~~pVG~SD--Ht~G~~ 206 (327)
T TIGR03586 132 KTGKPIIMSTGIATLEEIQEAVEACREAGCKDLVLL-KCTSSYPAPLEDANLRTIPDLAERF--NVPVGLSD--HTLGIL 206 (327)
T ss_pred hcCCcEEEECCCCCHHHHHHHHHHHHHCCCCcEEEE-ecCCCCCCCcccCCHHHHHHHHHHh--CCCEEeeC--CCCchH
Confidence 358999999874 4444 345557887444431 33221111 112445566666655 68995543 222 2
Q ss_pred HHHHHHHcCCCEEEechHHHHHhhccChHH----HHHHHHHHHHHHHHHHHHhCCC
Q 017718 291 DVFKALALGASGIFIGRPVVYSLAAEGEKG----VRRVLEMLREEFELAMALSGCR 342 (367)
Q Consensus 291 dv~kal~lGAd~V~ig~~~l~~l~~~G~~~----v~~~i~~l~~el~~~m~~~G~~ 342 (367)
-...|.++||+ +|=+-|-..-...|.+. --+-+..|.++++..-..+|..
T Consensus 207 ~~~aAva~GA~--iIEkH~tld~~l~G~D~~~Sl~p~e~~~lv~~ir~~~~~lg~~ 260 (327)
T TIGR03586 207 APVAAVALGAC--VIEKHFTLDRSDGGVDSAFSLEPDEFKALVKEVRNAWLALGEV 260 (327)
T ss_pred HHHHHHHcCCC--EEEeCCChhhcCCCCChhccCCHHHHHHHHHHHHHHHHHhCCC
Confidence 33466779998 45554433222223211 0123455566666666666653
|
|
| >cd02922 FCB2_FMN Flavocytochrome b2 (FCB2) FMN-binding domain | Back alignment and domain information |
|---|
Probab=88.90 E-value=1.8 Score=42.75 Aligned_cols=43 Identities=28% Similarity=0.425 Sum_probs=36.3
Q ss_pred chHHHHHHHHHHhcCCCcEEEecCCCCHHHHHHHHHcCCCEEEech
Q 017718 262 ATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFIGR 307 (367)
Q Consensus 262 ~~~~~l~~i~~~~~~~~~via~GGI~~~~dv~kal~lGAd~V~ig~ 307 (367)
.+++.|.++++.. ++||++- ||.+.+|+.++..+|+|++.+..
T Consensus 200 ~~~~~i~~l~~~~--~~PvivK-gv~~~~dA~~a~~~G~d~I~vsn 242 (344)
T cd02922 200 LTWDDIKWLRKHT--KLPIVLK-GVQTVEDAVLAAEYGVDGIVLSN 242 (344)
T ss_pred CCHHHHHHHHHhc--CCcEEEE-cCCCHHHHHHHHHcCCCEEEEEC
Confidence 4567788887766 7899986 68999999999999999999865
|
FCB2 (AKA L-lactate:cytochrome c oxidoreductase) is a respiratory enzyme located in the intermembrane space of fungal mitochondria which catalyzes the oxidation of L-lactate to pyruvate. FCB2 also participates in a short electron-transport chain involving cytochrome c and cytochrome oxidase which ultimately directs the reducing equivalents gained from L-lactate oxidation to oxygen, yielding one molecule of ATP for every L-lactate molecule consumed. FCB2 is composed of 2 domains: a C-terminal flavin-binding domain, which includes the active site for lacate oxidation, and an N-terminal b2-cytochrome domain, required for efficient cytochrome c reduction. FCB2 is a homotetramer and contains two noncovalently bound cofactors, FMN and heme per subunit. |
| >TIGR00259 thylakoid_BtpA membrane complex biogenesis protein, BtpA family | Back alignment and domain information |
|---|
Probab=88.90 E-value=1.3 Score=42.00 Aligned_cols=73 Identities=21% Similarity=0.250 Sum_probs=45.1
Q ss_pred HHHHHHHHHcCCcEEEEcCCCCCCC--CCccchHHHHHHHHHHhcC--CCcEEEecCCCCH-H-HHHHHHHcCCCEEEec
Q 017718 233 AEDARIAVQAGAAGIIVSNHGARQL--DYVPATIMALEEVVKATQG--RIPVFLDGGVRRG-T-DVFKALALGASGIFIG 306 (367)
Q Consensus 233 ~~~a~~~~~~G~d~i~vs~~gg~~~--~~~~~~~~~l~~i~~~~~~--~~~via~GGI~~~-~-dv~kal~lGAd~V~ig 306 (367)
.++|+.+.+.|+|+|++.|.+..-. +.++.+..++..+...++. .+| ++.-=+++. . -+.-|.+.|||+|-+-
T Consensus 31 ~~ea~~l~~~GvD~viveN~~d~P~~~~~~p~tva~m~~i~~~v~~~~~~p-~GvnvL~nd~~aal~iA~a~ga~FIRv~ 109 (257)
T TIGR00259 31 WKDAMALEEGGVDAVMFENFFDAPFLKEVDPETVAAMAVIAGQLKSDVSIP-LGINVLRNDAVAALAIAMAVGAKFIRVN 109 (257)
T ss_pred HHHHHHHHhCCCCEEEEecCCCCCCcCCCCHHHHHHHHHHHHHHHHhcCCC-eeeeeecCCCHHHHHHHHHhCCCEEEEc
Confidence 3789999999999999999887433 5566666655555443322 345 222112322 2 2334446799999874
|
Members of this family are found in C. elegans, Synechocystis sp., E. coli, and several of the Archaea. Members in Cyanobacteria have been shown to play a role in protein complex biogenesis, and designated BtpA (biogenesis of thylakoid protein). Homologs in non-photosynthetic species, where thylakoid intracytoplasmic membranes are lacking, are likely to act elsewhere in membrane protein biogenesis. |
| >COG2089 SpsE Sialic acid synthase [Cell envelope biogenesis, outer membrane] | Back alignment and domain information |
|---|
Probab=88.89 E-value=22 Score=34.81 Aligned_cols=206 Identities=17% Similarity=0.147 Sum_probs=0.0
Q ss_pred ceeEcCeeecc---ceEeCcccchhccCChhhHHHHHHHHHcCCcee-ecCCCCCCHHHHHhhCCCceE-----------
Q 017718 62 NTTVLGFKISM---PIMIAPTAMQKMAHPEGEYATARAASAAGTIMT-LSSWSTSSVEEVASTGPGIRF----------- 126 (367)
Q Consensus 62 st~i~g~~l~~---Pi~iAPm~~~~l~~~~~e~~~a~aa~~~G~~~~-vs~~~~~~~e~i~~~~~~~~~----------- 126 (367)
..+++|+.+.. |++||=+|...-..-+.-.++..+|+++|+.++ + +.-...+.+........+
T Consensus 1 ~~~Ig~r~i~~~~~~~iIAEig~NHnG~le~A~~lIdaAk~aGADavKf--Qt~~~~d~~t~~~~~~~~~i~~~~~~~sl 78 (347)
T COG2089 1 MIKIGNRTIGKDKKPFIIAEIGANHNGDLERAKELIDAAKEAGADAVKF--QTFYTPDIMTLESKNVPFKIKTLWDKVSL 78 (347)
T ss_pred CeeeCceeecCCCCcEEEeeecccccCcHHHHHHHHHHHHHcCcceeee--ecccccccccccccCCccccccccccccH
Q ss_pred EEEee--cCCHHHHHHHHHHHHHcCCcEEEEecCCCCCCchhHHhhhhcCCCCccccccccccccCccccccchhhHHHh
Q 017718 127 FQLYV--YKDRNVVAQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLTLKNFQGLDLGKMDEANDSGLAAYV 204 (367)
Q Consensus 127 ~QLy~--~~d~~~~~~~l~ra~~~G~~ai~itvd~p~~g~r~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 204 (367)
+|+|- .-+.++..++.+.|++.|.-.+ +.....+..|+-+.+..|.
T Consensus 79 yel~e~~~~p~e~~~~Lke~a~~~Gi~~~-----SSPfd~~svd~l~~~~~~a--------------------------- 126 (347)
T COG2089 79 YELYEEAETPLEWHAQLKEYARKRGIIFF-----SSPFDLTAVDLLESLNPPA--------------------------- 126 (347)
T ss_pred HHHHHHhcCCHHHHHHHHHHHHHcCeEEE-----ecCCCHHHHHHHHhcCCCe---------------------------
Q ss_pred hhccCccccHH---HHHhhcCCCEEEEecCC-----HHHHHHHHHcCCc-EEEEcCCCCCCCCCccchHHHHHHHHHHhc
Q 017718 205 AGQIDRSLSWK---WLQTITKLPILVKGVLT-----AEDARIAVQAGAA-GIIVSNHGARQLDYVPATIMALEEVVKATQ 275 (367)
Q Consensus 205 ~~~~d~~~~~~---~l~~~~~~Pv~vK~v~~-----~~~a~~~~~~G~d-~i~vs~~gg~~~~~~~~~~~~l~~i~~~~~ 275 (367)
-+-.....+|- ......+.|+++-..++ .+....+.+.|.. .+.++....+.-..-...+..++.+.+..
T Consensus 127 yKIaS~E~~~~plik~iA~~~kPiIlSTGma~~~ei~~av~~~r~~g~~~i~LLhC~s~YPap~ed~NL~~i~~l~~~F- 205 (347)
T COG2089 127 YKIASGEINDLPLIKYIAKKGKPIILSTGMATIEEIEEAVAILRENGNPDIALLHCTSAYPAPFEDVNLKAIPKLAEAF- 205 (347)
T ss_pred EEecCccccChHHHHHHHhcCCCEEEEcccccHHHHHHHHHHHHhcCCCCeEEEEecCCCCCCHHHhhHHHHHHHHHHh-
Q ss_pred CCCcEEEecCCCCHHHHHHHHHcCCCEE
Q 017718 276 GRIPVFLDGGVRRGTDVFKALALGASGI 303 (367)
Q Consensus 276 ~~~~via~GGI~~~~dv~kal~lGAd~V 303 (367)
.++|=.+.==..-.-.+-|.+|||..+
T Consensus 206 -n~~vGlSDHT~g~~a~l~AvALGA~vi 232 (347)
T COG2089 206 -NAIVGLSDHTLGILAPLAAVALGASVI 232 (347)
T ss_pred -CCccccccCccchhHHHHHHHhcccce
|
|
| >PRK10415 tRNA-dihydrouridine synthase B; Provisional | Back alignment and domain information |
|---|
Probab=88.86 E-value=4.6 Score=39.45 Aligned_cols=34 Identities=18% Similarity=0.419 Sum_probs=28.7
Q ss_pred HHHhhcCCCEEEEec-CCHHHHHHHHH-cCCcEEEE
Q 017718 216 WLQTITKLPILVKGV-LTAEDARIAVQ-AGAAGIIV 249 (367)
Q Consensus 216 ~l~~~~~~Pv~vK~v-~~~~~a~~~~~-~G~d~i~v 249 (367)
.+++.+++||+.=+- .+.++++.+.+ .|+|++.+
T Consensus 188 ~ik~~~~iPVI~nGgI~s~~da~~~l~~~gadgVmi 223 (321)
T PRK10415 188 AVKQKVSIPVIANGDITDPLKARAVLDYTGADALMI 223 (321)
T ss_pred HHHHhcCCcEEEeCCCCCHHHHHHHHhccCCCEEEE
Confidence 677778999987764 68999998886 69999988
|
|
| >PRK12857 fructose-1,6-bisphosphate aldolase; Reviewed | Back alignment and domain information |
|---|
Probab=88.81 E-value=13 Score=35.64 Aligned_cols=107 Identities=21% Similarity=0.282 Sum_probs=73.5
Q ss_pred CCHHHHHHHH-HcCCcEEEEcC---CCCCCCCCcc--chHHHHHHHHHHhcCCCcEEEecCCCCH-HHHHHHHHcCCCEE
Q 017718 231 LTAEDARIAV-QAGAAGIIVSN---HGARQLDYVP--ATIMALEEVVKATQGRIPVFLDGGVRRG-TDVFKALALGASGI 303 (367)
Q Consensus 231 ~~~~~a~~~~-~~G~d~i~vs~---~gg~~~~~~~--~~~~~l~~i~~~~~~~~~via~GGI~~~-~dv~kal~lGAd~V 303 (367)
.++++|+... +.|+|.+-++. ||-+ .+. -.++.|.+|.+.+ ++|+..=||=..+ +++.|++.+|..-|
T Consensus 155 T~pe~a~~Fv~~TgvD~LAvaiGt~HG~y---~~~p~Ld~~~L~~i~~~~--~vPLVlHGgSG~~~e~~~~ai~~Gi~Ki 229 (284)
T PRK12857 155 TDPEEARRFVEETGVDALAIAIGTAHGPY---KGEPKLDFDRLAKIKELV--NIPIVLHGSSGVPDEAIRKAISLGVRKV 229 (284)
T ss_pred CCHHHHHHHHHHHCCCEEeeccCcccccc---CCCCcCCHHHHHHHHHHh--CCCEEEeCCCCCCHHHHHHHHHcCCeEE
Confidence 5788887765 67999999874 5543 233 3678899998887 7999887765444 56778999999999
Q ss_pred EechHHHHHhhc-------cC------hHHHHHHHHHHHHHHHHHHHHhCCC
Q 017718 304 FIGRPVVYSLAA-------EG------EKGVRRVLEMLREEFELAMALSGCR 342 (367)
Q Consensus 304 ~ig~~~l~~l~~-------~G------~~~v~~~i~~l~~el~~~m~~~G~~ 342 (367)
=++|-+..+... .. ..-.....+.+++.++..|+.+|..
T Consensus 230 Ni~T~~~~a~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~v~~~i~~~gs~ 281 (284)
T PRK12857 230 NIDTNIREAFVARLREVLEKNPDEIDPRKILGPAREAAKEVIREKIRLFGSA 281 (284)
T ss_pred EeCcHHHHHHHHHHHHHHHhCCCcCCHHHHHHHHHHHHHHHHHHHHHHhCCC
Confidence 999977554210 00 0123344556677777777777753
|
|
| >COG0135 TrpF Phosphoribosylanthranilate isomerase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=88.80 E-value=16 Score=33.54 Aligned_cols=63 Identities=17% Similarity=0.326 Sum_probs=46.4
Q ss_pred ccccHHHHHhh-cCCCEEEEecCCHHHHHHHHHcCC-cEEEEcCCCCCCCCCccchHHHHHHHHHHh
Q 017718 210 RSLSWKWLQTI-TKLPILVKGVLTAEDARIAVQAGA-AGIIVSNHGARQLDYVPATIMALEEVVKAT 274 (367)
Q Consensus 210 ~~~~~~~l~~~-~~~Pv~vK~v~~~~~a~~~~~~G~-d~i~vs~~gg~~~~~~~~~~~~l~~i~~~~ 274 (367)
..++|..+... ...|+++.+..+++.+..+++.+. .+|.+|. |-..+.|.-..+.+.++.+.+
T Consensus 141 ~~fDW~~l~~~~~~~~~~LAGGL~p~NV~~ai~~~~p~gvDvSS--GVE~~pG~KD~~kv~~f~~~v 205 (208)
T COG0135 141 QTFDWNLLPKLRLSKPVMLAGGLNPDNVAEAIALGPPYGVDVSS--GVESSPGIKDPAKVKAFFEAV 205 (208)
T ss_pred cEECHHHhccccccCCEEEECCCCHHHHHHHHHhcCCceEEecc--ccccCCCCCCHHHHHHHHHHH
Confidence 35799866664 678999999999999999999998 9999964 322223455666666666554
|
|
| >PF01702 TGT: Queuine tRNA-ribosyltransferase; InterPro: IPR002616 This is a family of queuine, archaeosine and general tRNA-ribosyltransferases 2 | Back alignment and domain information |
|---|
Probab=88.78 E-value=6 Score=36.75 Aligned_cols=75 Identities=17% Similarity=0.219 Sum_probs=46.0
Q ss_pred HHHHHHHcCCcEEEEcCCCCCCCCCccchHHHHHHHHHHhcCCCcEEEecCCCCHHHHHHHHHcCCCEEEechHHHHH
Q 017718 235 DARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFIGRPVVYS 312 (367)
Q Consensus 235 ~a~~~~~~G~d~i~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~~~via~GGI~~~~dv~kal~lGAd~V~ig~~~l~~ 312 (367)
.++.+.+.+++++.++|-+. ........+.+..+...++.+.|... =|+.++.+++.+..+|+|.+--..|..++
T Consensus 73 s~~~l~~~~~~g~~igGl~~--~~~~~~~~~~l~~i~~~lp~~~pr~l-~G~~~P~~i~~~v~~GvD~fDs~~p~~~A 147 (238)
T PF01702_consen 73 SAEELSEDGFDGYAIGGLSP--GEEKEERLEILEAIINNLPPDKPRYL-LGVGTPEEILEAVYLGVDLFDSSYPTRLA 147 (238)
T ss_dssp HHHHHHHSS-SEEEE-SSSS--SSHHHHHHHHHHHHHHCS-TTS-EEE-TTB-SHHHHHHHHHTT--EEEESHHHHHH
T ss_pred HHHHHHhcccccccccCCcC--CCCHHHHHHHHHHHHhhCCcccceec-cCCCCHHHHHHHHHcCCcEEcchHHHHHH
Confidence 46677776799999954111 01011233455555555666788888 56889999999999999988877787765
|
4.2.29 from EC, also known as tRNA-guanine transglycosylase and guanine insertion enzyme. Queuine tRNA-ribosyltransferase modifies tRNAs for asparagine, aspartic acid, histidine and tyrosine with queuine at position 34 and with archaeosine at position 15 in archaeal tRNAs. In bacterial it catalyses the exchange of guanine-34 at the wobble position with 7-aminomethyl-7-deazaguanine, and the addition of a cyclopentenediol moiety to 7-aminomethyl-7-deazaguanine-34 tRNA; giving a hypermodified base queuine in the wobble position [, ]. The aligned region contains a zinc binding motif C-x-C-x2-C-x29-H, and important tRNA and 7-aminomethyl-7deazaguanine binding residues [].; GO: 0008479 queuine tRNA-ribosyltransferase activity, 0006400 tRNA modification, 0008616 queuosine biosynthetic process; PDB: 2ASH_A 1J2B_A 1IT8_A 1IT7_B 1IQ8_A 1R5Y_A 1P0B_A 3BL3_A 3EOS_A 1EFZ_A .... |
| >PRK07084 fructose-bisphosphate aldolase; Provisional | Back alignment and domain information |
|---|
Probab=88.60 E-value=6.6 Score=38.41 Aligned_cols=81 Identities=23% Similarity=0.267 Sum_probs=59.9
Q ss_pred CCHHHHHHHH-HcCCcEEEEcC---CCCCCCC-C--c-cchHHHHHHHHHHhcCCCcEEEecCCCC--------------
Q 017718 231 LTAEDARIAV-QAGAAGIIVSN---HGARQLD-Y--V-PATIMALEEVVKATQGRIPVFLDGGVRR-------------- 288 (367)
Q Consensus 231 ~~~~~a~~~~-~~G~d~i~vs~---~gg~~~~-~--~-~~~~~~l~~i~~~~~~~~~via~GGI~~-------------- 288 (367)
.++++|+... +.|+|.+.++. ||-+... + . .-.++.|.+|.+.+. ++|+..=||=..
T Consensus 164 T~peeA~~Fv~~TgvD~LAvaiGt~HG~Y~~~~~~~~p~Ld~d~L~~I~~~~~-~vPLVLHGgSg~~~~~~~~~~~~g~~ 242 (321)
T PRK07084 164 TQPEEVEDFVKKTGVDSLAISIGTSHGAYKFKPGQCPPPLRFDILEEIEKRIP-GFPIVLHGSSSVPQEYVKTINEYGGK 242 (321)
T ss_pred CCHHHHHHHHHHhCCCEEeeccccccccccCCCCCCCCccCHHHHHHHHHhcC-CCCEEEeCCCCCcHHHHHHHHHhcCc
Confidence 5688887765 57999999875 5654321 1 1 236788999988873 589998776432
Q ss_pred --------HHHHHHHHHcCCCEEEechHHHHH
Q 017718 289 --------GTDVFKALALGASGIFIGRPVVYS 312 (367)
Q Consensus 289 --------~~dv~kal~lGAd~V~ig~~~l~~ 312 (367)
-+|+.|++.+|..-|=++|-+..+
T Consensus 243 ~~~~~Gi~~e~~~kai~~GI~KINi~Tdl~~a 274 (321)
T PRK07084 243 LKDAIGIPEEQLRKAAKSAVCKINIDSDGRLA 274 (321)
T ss_pred cccCCCCCHHHHHHHHHcCCceeccchHHHHH
Confidence 388999999999999999977554
|
|
| >COG0159 TrpA Tryptophan synthase alpha chain [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=88.39 E-value=1.9 Score=40.90 Aligned_cols=36 Identities=33% Similarity=0.458 Sum_probs=31.2
Q ss_pred HHHHHhhcCCCEEEEe-cCCHHHHHHHHHcCCcEEEEc
Q 017718 214 WKWLQTITKLPILVKG-VLTAEDARIAVQAGAAGIIVS 250 (367)
Q Consensus 214 ~~~l~~~~~~Pv~vK~-v~~~~~a~~~~~~G~d~i~vs 250 (367)
.+++|+.+++|+++.- +.++++++.+.++ +||++|.
T Consensus 197 v~~vr~~~~~Pv~vGFGIs~~e~~~~v~~~-ADGVIVG 233 (265)
T COG0159 197 VKRVRKYTDVPVLVGFGISSPEQAAQVAEA-ADGVIVG 233 (265)
T ss_pred HHHHHHhcCCCeEEecCcCCHHHHHHHHHh-CCeEEEc
Confidence 3489998999999885 4789999999999 9999993
|
|
| >cd00429 RPE Ribulose-5-phosphate 3-epimerase (RPE) | Back alignment and domain information |
|---|
Probab=88.30 E-value=18 Score=32.22 Aligned_cols=83 Identities=13% Similarity=0.057 Sum_probs=48.7
Q ss_pred HHHhhcCCCEEEEec-CC-HHHHHHHHHcCCcEEEEcCCCCCCCCCccchHHHHHHHHHHhcCCCcEEEecCCCCHHHHH
Q 017718 216 WLQTITKLPILVKGV-LT-AEDARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVF 293 (367)
Q Consensus 216 ~l~~~~~~Pv~vK~v-~~-~~~a~~~~~~G~d~i~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~~~via~GGI~~~~dv~ 293 (367)
++++.++.|+.+... .+ .+.++.+.++|+|++.+ |++.. ....+.++.+.+ . .+.+..+-.-.+..+..
T Consensus 51 ~i~~~~~~~~~v~l~~~d~~~~~~~~~~~g~dgv~v--h~~~~----~~~~~~~~~~~~-~--~~~~g~~~~~~~~~~~~ 121 (211)
T cd00429 51 ALRKHTDLPLDVHLMVENPERYIEAFAKAGADIITF--HAEAT----DHLHRTIQLIKE-L--GMKAGVALNPGTPVEVL 121 (211)
T ss_pred HHHhhCCCcEEEEeeeCCHHHHHHHHHHcCCCEEEE--Cccch----hhHHHHHHHHHH-C--CCeEEEEecCCCCHHHH
Confidence 566544456543332 22 35688888999999999 55421 122333443332 2 44455544444566677
Q ss_pred HHHHcCCCEEEech
Q 017718 294 KALALGASGIFIGR 307 (367)
Q Consensus 294 kal~lGAd~V~ig~ 307 (367)
+.+..++|.+.++.
T Consensus 122 ~~~~~~~d~i~~~~ 135 (211)
T cd00429 122 EPYLDEVDLVLVMS 135 (211)
T ss_pred HHHHhhCCEEEEEE
Confidence 77777799998875
|
This enzyme catalyses the interconversion of D-ribulose 5-phosphate (Ru5P) into D-xylulose 5-phosphate, as part of the Calvin cycle (reductive pentose phosphate pathway) in chloroplasts and in the oxidative pentose phosphate pathway. In the Calvin cycle Ru5P is phosphorylated by phosphoribulose kinase to ribulose-1,5-bisphosphate, which in turn is used by RubisCO (ribulose-1,5-bisphosphate carboxylase/oxygenase) to incorporate CO2 as the central step in carbohydrate synthesis. |
| >TIGR01037 pyrD_sub1_fam dihydroorotate dehydrogenase (subfamily 1) family protein | Back alignment and domain information |
|---|
Probab=88.11 E-value=3 Score=40.02 Aligned_cols=34 Identities=29% Similarity=0.390 Sum_probs=29.0
Q ss_pred HHHhhcCCCEEEE-ecCCHHHHHHHHHcCCcEEEE
Q 017718 216 WLQTITKLPILVK-GVLTAEDARIAVQAGAAGIIV 249 (367)
Q Consensus 216 ~l~~~~~~Pv~vK-~v~~~~~a~~~~~~G~d~i~v 249 (367)
.+++..++||+.= ++.+.++|..+.++|||+|.+
T Consensus 228 ~i~~~~~ipvi~~GGI~s~~da~~~l~~GAd~V~i 262 (300)
T TIGR01037 228 DVYKMVDIPIIGVGGITSFEDALEFLMAGASAVQV 262 (300)
T ss_pred HHHhcCCCCEEEECCCCCHHHHHHHHHcCCCceee
Confidence 6777788999854 468999999999999999988
|
This family includes subfamily 1 dihydroorotate dehydrogenases while excluding the closely related subfamily 2 (TIGR01036). This family also includes a number of uncharacterized proteins and a domain of dihydropyrimidine dehydrogenase. The uncharacterized proteins might all be dihydroorotate dehydrogenase. |
| >COG0800 Eda 2-keto-3-deoxy-6-phosphogluconate aldolase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=88.05 E-value=3.5 Score=37.74 Aligned_cols=61 Identities=23% Similarity=0.256 Sum_probs=51.1
Q ss_pred HHHHHHHcCCcEEEEcCCCCCCCCCccchHHHHHHHHHHhcCCCcEEEecCCCCHHHHHHHHHcCCCEEE
Q 017718 235 DARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIF 304 (367)
Q Consensus 235 ~a~~~~~~G~d~i~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~~~via~GGI~~~~dv~kal~lGAd~V~ 304 (367)
.++.+.+.|++.|-+.. ..+...+.++++++..+ --+|+.|=|-+++++..+...||+++.
T Consensus 30 ~a~Ali~gGi~~IEITl-------~sp~a~e~I~~l~~~~p--~~lIGAGTVL~~~q~~~a~~aGa~fiV 90 (211)
T COG0800 30 LAKALIEGGIPAIEITL-------RTPAALEAIRALAKEFP--EALIGAGTVLNPEQARQAIAAGAQFIV 90 (211)
T ss_pred HHHHHHHcCCCeEEEec-------CCCCHHHHHHHHHHhCc--ccEEccccccCHHHHHHHHHcCCCEEE
Confidence 36788999999999854 23567889999988774 348999999999999999999999885
|
|
| >COG2513 PrpB PEP phosphonomutase and related enzymes [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=87.78 E-value=2.3 Score=40.70 Aligned_cols=84 Identities=26% Similarity=0.353 Sum_probs=60.0
Q ss_pred CCCEEEEecCCHHHHHHHHHcCCcEEEEcCCCCC----CCCCccchHH----HHHHHHHHhcCCCcEEEec--CCCCHHH
Q 017718 222 KLPILVKGVLTAEDARIAVQAGAAGIIVSNHGAR----QLDYVPATIM----ALEEVVKATQGRIPVFLDG--GVRRGTD 291 (367)
Q Consensus 222 ~~Pv~vK~v~~~~~a~~~~~~G~d~i~vs~~gg~----~~~~~~~~~~----~l~~i~~~~~~~~~via~G--GI~~~~d 291 (367)
+-|+++-++-++-.|+.+.++|.++|.+|++|=. -.|.+..+++ ..++|.+.+ ++||++|. |..++..
T Consensus 17 ~~~~~~pg~~d~~sA~la~~aGF~al~~sg~~vA~slG~pD~~~~t~~e~~~~vrrI~~a~--~lPv~vD~dtGfG~~~n 94 (289)
T COG2513 17 GDPLVLPGAWDAGSALLAERAGFKALYLSGAGVAASLGLPDLGITTLDEVLADARRITDAV--DLPVLVDIDTGFGEALN 94 (289)
T ss_pred CCCEEecCCcCHHHHHHHHHcCCeEEEeccHHHHHhcCCCccccccHHHHHHHHHHHHhhc--CCceEEeccCCCCcHHH
Confidence 5688888899999999999999999999875411 1355555443 345555555 89999954 6666555
Q ss_pred HH----HHHHcCCCEEEech
Q 017718 292 VF----KALALGASGIFIGR 307 (367)
Q Consensus 292 v~----kal~lGAd~V~ig~ 307 (367)
+. +++..|+.++.|=-
T Consensus 95 vartV~~~~~aG~agi~iED 114 (289)
T COG2513 95 VARTVRELEQAGAAGIHIED 114 (289)
T ss_pred HHHHHHHHHHcCcceeeeee
Confidence 44 55568999887753
|
|
| >cd04740 DHOD_1B_like Dihydroorotate dehydrogenase (DHOD) class 1B FMN-binding domain | Back alignment and domain information |
|---|
Probab=87.61 E-value=5.5 Score=38.09 Aligned_cols=34 Identities=29% Similarity=0.355 Sum_probs=29.1
Q ss_pred HHHhhcCCCEEEEec-CCHHHHHHHHHcCCcEEEE
Q 017718 216 WLQTITKLPILVKGV-LTAEDARIAVQAGAAGIIV 249 (367)
Q Consensus 216 ~l~~~~~~Pv~vK~v-~~~~~a~~~~~~G~d~i~v 249 (367)
.+++..++||+.-+. .+.+++..+.++|||+|.+
T Consensus 225 ~i~~~~~ipii~~GGI~~~~da~~~l~~GAd~V~i 259 (296)
T cd04740 225 QVYKAVEIPIIGVGGIASGEDALEFLMAGASAVQV 259 (296)
T ss_pred HHHHhcCCCEEEECCCCCHHHHHHHHHcCCCEEEE
Confidence 667777899887664 6899999999999999988
|
DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences and cellular location. Members of class 1 are cytosolic enzymes and multimers while class 2 enzymes are membrane associated and monomeric. The class 1 enzymes can be further divided into subtypes 1A and 1B which are homodimers and heterotetrameric proteins, respectively. |
| >CHL00162 thiG thiamin biosynthesis protein G; Validated | Back alignment and domain information |
|---|
Probab=87.59 E-value=2.2 Score=40.13 Aligned_cols=37 Identities=22% Similarity=0.503 Sum_probs=30.6
Q ss_pred cHHHHHhhcCCCEEEEe-cCCHHHHHHHHHcCCcEEEE
Q 017718 213 SWKWLQTITKLPILVKG-VLTAEDARIAVQAGAAGIIV 249 (367)
Q Consensus 213 ~~~~l~~~~~~Pv~vK~-v~~~~~a~~~~~~G~d~i~v 249 (367)
.++.+++..++||++-- +.+++|+..+.+.|+|++-+
T Consensus 180 ~l~~i~e~~~vpVivdAGIgt~sDa~~AmElGaDgVL~ 217 (267)
T CHL00162 180 NLQIIIENAKIPVIIDAGIGTPSEASQAMELGASGVLL 217 (267)
T ss_pred HHHHHHHcCCCcEEEeCCcCCHHHHHHHHHcCCCEEee
Confidence 34567777889988764 58899999999999999977
|
|
| >PRK09427 bifunctional indole-3-glycerol phosphate synthase/phosphoribosylanthranilate isomerase; Provisional | Back alignment and domain information |
|---|
Probab=87.56 E-value=11 Score=38.60 Aligned_cols=66 Identities=23% Similarity=0.211 Sum_probs=46.0
Q ss_pred ecCCHHHHHHHHHcCCcEEEEcCCCCCCCCCccchHHHHHHHHHHhcCCCcEEEecCCCCHHHHHHHHHcCCCEEEe
Q 017718 229 GVLTAEDARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFI 305 (367)
Q Consensus 229 ~v~~~~~a~~~~~~G~d~i~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~~~via~GGI~~~~dv~kal~lGAd~V~i 305 (367)
|+.++++++.+.+ |+|++-|. +.+-..+.....+.++.. ..+.| .|+++.+|+..+..+|||++++
T Consensus 218 GI~t~~d~~~~~~-~~davLiG----~~lm~~~d~~~~~~~L~~---~~vKI---CGit~~eda~~a~~~GaD~lGf 283 (454)
T PRK09427 218 GIYTHAQVRELSP-FANGFLIG----SSLMAEDDLELAVRKLIL---GENKV---CGLTRPQDAKAAYDAGAVYGGL 283 (454)
T ss_pred CCCCHHHHHHHHh-cCCEEEEC----HHHcCCCCHHHHHHHHhc---ccccc---CCCCCHHHHHHHHhCCCCEEee
Confidence 4578999998865 79999882 223233334445554432 12333 6899999999999999999987
|
|
| >cd02940 DHPD_FMN Dihydropyrimidine dehydrogenase (DHPD) FMN-binding domain | Back alignment and domain information |
|---|
Probab=87.51 E-value=4.4 Score=39.02 Aligned_cols=106 Identities=17% Similarity=0.141 Sum_probs=58.2
Q ss_pred CceEEEEeecCCHHHHHHHHHHHHHcCCcEEEEecCCCCCCchhHHhhhhcCCCCccccccccccccCccccccchhhHH
Q 017718 123 GIRFFQLYVYKDRNVVAQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLTLKNFQGLDLGKMDEANDSGLAA 202 (367)
Q Consensus 123 ~~~~~QLy~~~d~~~~~~~l~ra~~~G~~ai~itvd~p~~g~r~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~ 202 (367)
.|.++.|-. +...+.++++.++++|+++++++=-.+. .-..|+.+.-..+ .+..+ +. . +
T Consensus 169 ~Pv~vKl~~--~~~~~~~~a~~~~~~Gadgi~~~Nt~~~--~~~id~~~~~~~~-~~~~~------------~~-~--g- 227 (299)
T cd02940 169 IPVIAKLTP--NITDIREIARAAKEGGADGVSAINTVNS--LMGVDLDGTPPAP-GVEGK------------TT-Y--G- 227 (299)
T ss_pred CCeEEECCC--CchhHHHHHHHHHHcCCCEEEEeccccc--ccccccccCCccc-cccCC------------CC-c--C-
Confidence 578888753 4446778899999999999875321110 0000000000000 00000 00 0 0
Q ss_pred HhhhccCccccHH---HHHhhc--CCCEEEEe-cCCHHHHHHHHHcCCcEEEE
Q 017718 203 YVAGQIDRSLSWK---WLQTIT--KLPILVKG-VLTAEDARIAVQAGAAGIIV 249 (367)
Q Consensus 203 ~~~~~~d~~~~~~---~l~~~~--~~Pv~vK~-v~~~~~a~~~~~~G~d~i~v 249 (367)
.+.........|+ .+++.. ++||+.=+ +.+.+|+.....+|||++.+
T Consensus 228 g~sG~a~~p~~l~~v~~~~~~~~~~ipIig~GGI~~~~da~~~l~aGA~~V~i 280 (299)
T cd02940 228 GYSGPAVKPIALRAVSQIARAPEPGLPISGIGGIESWEDAAEFLLLGASVVQV 280 (299)
T ss_pred cccCCCcchHHHHHHHHHHHhcCCCCcEEEECCCCCHHHHHHHHHcCCChheE
Confidence 0000012223455 677777 78987655 58899999999999999988
|
DHPD catalyzes the first step in pyrimidine degradation: the NADPH-dependent reduction of uracil and thymine to the corresponding 5,6-dihydropyrimidines. DHPD contains two FAD, two FMN, and eight [4Fe-4S] clusters, arranged in two electron transfer chains that pass the dimer interface twice. Two of the Fe-S clusters show a hitherto unobserved coordination involving a glutamine residue. |
| >cd02801 DUS_like_FMN Dihydrouridine synthase-like (DUS-like) FMN-binding domain | Back alignment and domain information |
|---|
Probab=87.47 E-value=5.8 Score=36.17 Aligned_cols=34 Identities=21% Similarity=0.530 Sum_probs=28.8
Q ss_pred HHHhhcCCCEEEEec-CCHHHHHHHHHc-CCcEEEE
Q 017718 216 WLQTITKLPILVKGV-LTAEDARIAVQA-GAAGIIV 249 (367)
Q Consensus 216 ~l~~~~~~Pv~vK~v-~~~~~a~~~~~~-G~d~i~v 249 (367)
.+++..++||+.=+. .+.+++..+.+. |+|+|.+
T Consensus 177 ~i~~~~~ipvi~~Ggi~~~~d~~~~l~~~gad~V~i 212 (231)
T cd02801 177 EIKEAVSIPVIANGDIFSLEDALRCLEQTGVDGVMI 212 (231)
T ss_pred HHHhCCCCeEEEeCCCCCHHHHHHHHHhcCCCEEEE
Confidence 677778899988765 689999999887 8999988
|
Members of this family catalyze the reduction of the 5,6-double bond of a uridine residue on tRNA. Dihydrouridine modification of tRNA is widely observed in prokaryotes and eukaryotes, and also in some archaea. Most dihydrouridines are found in the D loop of t-RNAs. The role of dihydrouridine in tRNA is currently unknown, but may increase conformational flexibility of the tRNA. It is likely that different family members have different substrate specificities, which may overlap. 1VHN, a putative flavin oxidoreductase, has high sequence similarity to DUS. The enzymatic mechanism of 1VHN is not known at the present. |
| >PLN02858 fructose-bisphosphate aldolase | Back alignment and domain information |
|---|
Probab=87.46 E-value=67 Score=37.81 Aligned_cols=111 Identities=14% Similarity=0.176 Sum_probs=75.3
Q ss_pred CCHHHHHHHH-HcCCcEEEEcC---CCCCCCCCccchHHHHHHHHHHhcC-CCcEEEec--CCCCHHHHHHHHHcCCCEE
Q 017718 231 LTAEDARIAV-QAGAAGIIVSN---HGARQLDYVPATIMALEEVVKATQG-RIPVFLDG--GVRRGTDVFKALALGASGI 303 (367)
Q Consensus 231 ~~~~~a~~~~-~~G~d~i~vs~---~gg~~~~~~~~~~~~l~~i~~~~~~-~~~via~G--GI~~~~dv~kal~lGAd~V 303 (367)
.++++|+... +.|+|.+-++- ||-+......-.++.|.+|.+.+.. ++|+..=| |+. -+++.|++.+|..-|
T Consensus 1250 T~p~~a~~Fv~~TgvD~LAvaiGt~HG~Y~~~~p~l~~~~l~~i~~~~~~~~vpLVlHGgSG~~-~~~~~~ai~~Gi~Ki 1328 (1378)
T PLN02858 1250 TDVDQAKEFIDETGIDALAVCIGNVHGKYPASGPNLRLDLLKELRALSSKKGVLLVLHGASGLP-ESLIKECIENGVRKF 1328 (1378)
T ss_pred CCHHHHHHHHHhcCCcEEeeecccccccCCCCCCccCHHHHHHHHHHhcCCCCcEEEeCCCCCC-HHHHHHHHHcCCeEE
Confidence 4678877665 57999999864 5644311112367889999988732 58888866 444 577889999999999
Q ss_pred EechHHHHHhh----ccCh----HHHHHHHHHHHHHHHHHHHHhCCC
Q 017718 304 FIGRPVVYSLA----AEGE----KGVRRVLEMLREEFELAMALSGCR 342 (367)
Q Consensus 304 ~ig~~~l~~l~----~~G~----~~v~~~i~~l~~el~~~m~~~G~~ 342 (367)
=++|-+.++.. ..+. .-.....+.+++-.+..|+.+|..
T Consensus 1329 Ni~T~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~gs~ 1375 (1378)
T PLN02858 1329 NVNTEVRTAYMEALSSPKKTDLIDVMSAAKEAMKAVVAEKLRLFGSA 1375 (1378)
T ss_pred EeCHHHHHHHHHHHhCcccCCHHHHHHHHHHHHHHHHHHHHHHhCCC
Confidence 99997755422 1110 123345566777788888888754
|
|
| >PRK05265 pyridoxine 5'-phosphate synthase; Provisional | Back alignment and domain information |
|---|
Probab=87.31 E-value=22 Score=33.29 Aligned_cols=94 Identities=15% Similarity=0.124 Sum_probs=67.4
Q ss_pred HHHHHhhcCCCEEEEecCCHHHHHHHHHcCCcEEEEcCCCCC--CCCCcc---chHHHHHHHHHHhc---CCCcEEEecC
Q 017718 214 WKWLQTITKLPILVKGVLTAEDARIAVQAGAAGIIVSNHGAR--QLDYVP---ATIMALEEVVKATQ---GRIPVFLDGG 285 (367)
Q Consensus 214 ~~~l~~~~~~Pv~vK~v~~~~~a~~~~~~G~d~i~vs~~gg~--~~~~~~---~~~~~l~~i~~~~~---~~~~via~GG 285 (367)
...|++..+.|+-+-+..+.+....+.+.-.+.+++---... +-++|. ...+.|..+.+.++ -++.+|.+-
T Consensus 57 v~~L~~~~~~~lNlE~a~~~em~~ia~~~kP~~vtLVPE~r~E~TTegGldv~~~~~~l~~~i~~L~~~gIrVSLFidP- 135 (239)
T PRK05265 57 VRLLRETLKTELNLEMAATEEMLDIALEVKPHQVTLVPEKREELTTEGGLDVAGQFDKLKPAIARLKDAGIRVSLFIDP- 135 (239)
T ss_pred HHHHHHhcCCCEEeccCCCHHHHHHHHHCCCCEEEECCCCCCCccCCccchhhcCHHHHHHHHHHHHHCCCEEEEEeCC-
Confidence 336777777789888888999999999999999998532111 112222 24455655555443 268889984
Q ss_pred CCCHHHHHHHHHcCCCEEEechHHH
Q 017718 286 VRRGTDVFKALALGASGIFIGRPVV 310 (367)
Q Consensus 286 I~~~~dv~kal~lGAd~V~ig~~~l 310 (367)
+.+++..+..+|||.|-+-+.-+
T Consensus 136 --~~~qi~~A~~~GAd~VELhTG~y 158 (239)
T PRK05265 136 --DPEQIEAAAEVGADRIELHTGPY 158 (239)
T ss_pred --CHHHHHHHHHhCcCEEEEechhh
Confidence 78999999999999999998554
|
|
| >TIGR02321 Pphn_pyruv_hyd phosphonopyruvate hydrolase | Back alignment and domain information |
|---|
Probab=87.21 E-value=3.7 Score=39.62 Aligned_cols=83 Identities=23% Similarity=0.190 Sum_probs=57.6
Q ss_pred CCCEEEEecCCHHHHHHHHHcCCcEEEEcCCCC---C-CCCCccchH----HHHHHHHHHhcCCCcEEEec--CCCCHHH
Q 017718 222 KLPILVKGVLTAEDARIAVQAGAAGIIVSNHGA---R-QLDYVPATI----MALEEVVKATQGRIPVFLDG--GVRRGTD 291 (367)
Q Consensus 222 ~~Pv~vK~v~~~~~a~~~~~~G~d~i~vs~~gg---~-~~~~~~~~~----~~l~~i~~~~~~~~~via~G--GI~~~~d 291 (367)
+.++++-++.+.-.|+.+.++|.++|.+|++|= . ..|.+.-++ +.+.+|.+.+ ++||++|. |..+..+
T Consensus 14 ~~~~~~pg~~D~lSAri~e~aGf~ai~~ss~~va~slG~pD~g~l~~~e~~~~~~~I~~~~--~lPv~aD~d~GyG~~~~ 91 (290)
T TIGR02321 14 GRLFTAMAAHNPLVAKLAEQAGFGGIWGSGFELSASYAVPDANILSMSTHLEMMRAIASTV--SIPLIADIDTGFGNAVN 91 (290)
T ss_pred CCCEEeccccCHHHHHHHHHcCCCEEEECHHHHHHHCCCCCcccCCHHHHHHHHHHHHhcc--CCCEEEECCCCCCCcHH
Confidence 456777778888899999999999999987531 1 245554433 3345555555 89999964 6666556
Q ss_pred H----HHHHHcCCCEEEec
Q 017718 292 V----FKALALGASGIFIG 306 (367)
Q Consensus 292 v----~kal~lGAd~V~ig 306 (367)
+ .++...|+.++.|-
T Consensus 92 v~~tV~~~~~aGvagi~IE 110 (290)
T TIGR02321 92 VHYVVPQYEAAGASAIVME 110 (290)
T ss_pred HHHHHHHHHHcCCeEEEEe
Confidence 5 34555899988883
|
This family consists of phosphonopyruvate hydrolase, an enzyme closely related to phosphoenolpyruvate phosphomutase. It cleaves the direct C-P bond of phosphonopyruvate. The characterized example is from Variovorax sp. Pal2. |
| >PF00290 Trp_syntA: Tryptophan synthase alpha chain; InterPro: IPR002028 Tryptophan synthase (4 | Back alignment and domain information |
|---|
Probab=87.17 E-value=5.4 Score=37.83 Aligned_cols=35 Identities=40% Similarity=0.536 Sum_probs=28.5
Q ss_pred HHHHhhcCCCEEEEe-cCCHHHHHHHHHcCCcEEEEc
Q 017718 215 KWLQTITKLPILVKG-VLTAEDARIAVQAGAAGIIVS 250 (367)
Q Consensus 215 ~~l~~~~~~Pv~vK~-v~~~~~a~~~~~~G~d~i~vs 250 (367)
+.+|+.+++||.+.- +.++++++.+. .|+||++|.
T Consensus 191 ~~ik~~~~~Pv~vGFGI~~~e~~~~~~-~~aDGvIVG 226 (259)
T PF00290_consen 191 KRIKKHTDLPVAVGFGISTPEQAKKLA-AGADGVIVG 226 (259)
T ss_dssp HHHHHTTSS-EEEESSS-SHHHHHHHH-TTSSEEEES
T ss_pred HHHHhhcCcceEEecCCCCHHHHHHHH-ccCCEEEEC
Confidence 488888999999985 47889999988 999999993
|
2.1.20 from EC) catalyzes the last step in the biosynthesis of tryptophan [, ]: |
| >cd00953 KDG_aldolase KDG (2-keto-3-deoxygluconate) aldolases found in archaea | Back alignment and domain information |
|---|
Probab=87.15 E-value=4.7 Score=38.44 Aligned_cols=92 Identities=10% Similarity=0.082 Sum_probs=0.0
Q ss_pred HHHHHHHHcCCcEEEEcCCCCCCCCCccchHHHHHHHHHHhcCCCcEEEecCCCCHHHHHHHHH----cCCCEEEechHH
Q 017718 234 EDARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALA----LGASGIFIGRPV 309 (367)
Q Consensus 234 ~~a~~~~~~G~d~i~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~~~via~GGI~~~~dv~kal~----lGAd~V~ig~~~ 309 (367)
+.++.+.+.|+|+|.+.|+.|-...-.......+-+......++ |++.=|=.+..|+++... +|||+|++..|+
T Consensus 24 ~li~~l~~~Gv~Gl~~~GstGE~~~Lt~eEr~~l~~~~~~~~~~--vi~gvg~~~~~~ai~~a~~a~~~Gad~v~v~~P~ 101 (279)
T cd00953 24 KHCENLISKGIDYVFVAGTTGLGPSLSFQEKLELLKAYSDITDK--VIFQVGSLNLEESIELARAAKSFGIYAIASLPPY 101 (279)
T ss_pred HHHHHHHHcCCcEEEEcccCCCcccCCHHHHHHHHHHHHHHcCC--EEEEeCcCCHHHHHHHHHHHHHcCCCEEEEeCCc
Q ss_pred HHHhhcc-ChHHHHHHHHHHHH
Q 017718 310 VYSLAAE-GEKGVRRVLEMLRE 330 (367)
Q Consensus 310 l~~l~~~-G~~~v~~~i~~l~~ 330 (367)
.+. . .++++.+++..+.+
T Consensus 102 y~~---~~~~~~i~~yf~~v~~ 120 (279)
T cd00953 102 YFP---GIPEEWLIKYFTDISS 120 (279)
T ss_pred CCC---CCCHHHHHHHHHHHHh
|
This subfamily of enzymes is adapted for high thermostability and shows specificity for non-phosphorylated substrates. The enzyme catalyses the reversible aldol cleavage of 2-keto-3-dexoygluconate to pyruvate and glyceraldehyde, the third step of a modified non-phosphorylated Entner-Doudoroff pathway of glucose oxidation. KDG aldolase shows no significant sequence similarity to microbial 2-keto-3-deoxyphosphogluconate (KDPG) aldolases, and the enzyme shows no activity with glyceraldehyde 3-phosphate as substrate. The enzyme is a tetramer and a member of the DHDPS family of Schiff-base-dependent class I aldolases. |
| >PRK07259 dihydroorotate dehydrogenase 1B; Reviewed | Back alignment and domain information |
|---|
Probab=87.00 E-value=5.4 Score=38.34 Aligned_cols=84 Identities=23% Similarity=0.308 Sum_probs=51.4
Q ss_pred hcCCCEEEEec-CCHHH----HHHHHHcC-CcEEEEcC------CCCCCCCCcc-chHHHHHHHHHHhcCCCcEEEe--c
Q 017718 220 ITKLPILVKGV-LTAED----ARIAVQAG-AAGIIVSN------HGARQLDYVP-ATIMALEEVVKATQGRIPVFLD--G 284 (367)
Q Consensus 220 ~~~~Pv~vK~v-~~~~~----a~~~~~~G-~d~i~vs~------~gg~~~~~~~-~~~~~l~~i~~~~~~~~~via~--G 284 (367)
..+.|+++=.. .+.++ |+++.++| +|+|.+.- |||..+...+ ...+.+..+++.+ ++||++- .
T Consensus 89 ~~~~p~i~si~g~~~~~~~~~a~~~~~aG~~D~iElN~~cP~~~~gg~~~~~~~~~~~eiv~~vr~~~--~~pv~vKl~~ 166 (301)
T PRK07259 89 EFDTPIIANVAGSTEEEYAEVAEKLSKAPNVDAIELNISCPNVKHGGMAFGTDPELAYEVVKAVKEVV--KVPVIVKLTP 166 (301)
T ss_pred ccCCcEEEEeccCCHHHHHHHHHHHhccCCcCEEEEECCCCCCCCCccccccCHHHHHHHHHHHHHhc--CCCEEEEcCC
Confidence 34789888665 34444 77888999 99998832 2232221111 2334555555554 6888873 3
Q ss_pred CCCCHHHHHHHHH-cCCCEEEe
Q 017718 285 GVRRGTDVFKALA-LGASGIFI 305 (367)
Q Consensus 285 GI~~~~dv~kal~-lGAd~V~i 305 (367)
.+.+..++++.+. .|+|++.+
T Consensus 167 ~~~~~~~~a~~l~~~G~d~i~~ 188 (301)
T PRK07259 167 NVTDIVEIAKAAEEAGADGLSL 188 (301)
T ss_pred CchhHHHHHHHHHHcCCCEEEE
Confidence 4555566777665 89998765
|
|
| >cd00954 NAL N-Acetylneuraminic acid aldolase, also called N-acetylneuraminate lyase (NAL), which catalyses the reversible aldol reaction of N-acetyl-D-mannosamine and pyruvate to give N-acetyl-D-neuraminic acid (D-sialic acid) | Back alignment and domain information |
|---|
Probab=86.99 E-value=29 Score=33.12 Aligned_cols=181 Identities=18% Similarity=0.116 Sum_probs=97.7
Q ss_pred ceEeCcccchhccCChhhHHHHHHHHHc-CCceee--c---CCCCCCHHHHH-------hhCC--CceEEEEeecCCHHH
Q 017718 73 PIMIAPTAMQKMAHPEGEYATARAASAA-GTIMTL--S---SWSTSSVEEVA-------STGP--GIRFFQLYVYKDRNV 137 (367)
Q Consensus 73 Pi~iAPm~~~~l~~~~~e~~~a~aa~~~-G~~~~v--s---~~~~~~~e~i~-------~~~~--~~~~~QLy~~~d~~~ 137 (367)
|.++.|+.-.+-.+.++-..+.+-+.+. |+..++ + ++.+.+.+|-. +... -+.++++- ..+.+.
T Consensus 6 ~a~~TPf~~dg~iD~~~~~~~i~~l~~~~Gv~gi~~~GstGE~~~Lt~~Er~~~~~~~~~~~~~~~~viagv~-~~~~~~ 84 (288)
T cd00954 6 AALLTPFDENGEINEDVLRAIVDYLIEKQGVDGLYVNGSTGEGFLLSVEERKQIAEIVAEAAKGKVTLIAHVG-SLNLKE 84 (288)
T ss_pred eceECCCCCCCCCCHHHHHHHHHHHHhcCCCCEEEECcCCcCcccCCHHHHHHHHHHHHHHhCCCCeEEeccC-CCCHHH
Confidence 5556676433333333444666666666 866442 3 33455666532 2222 24555653 345666
Q ss_pred HHHHHHHHHHcCCcEEEEecCCCCCCchhHHhhhhcCCCCccccccccccccCccccccchhhHHHhhhccCccccHHHH
Q 017718 138 VAQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLTLKNFQGLDLGKMDEANDSGLAAYVAGQIDRSLSWKWL 217 (367)
Q Consensus 138 ~~~~l~ra~~~G~~ai~itvd~p~~g~r~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~l 217 (367)
..++++.|+++|++++.+.- |.. +++ + ...+.+ -++.+
T Consensus 85 ai~~a~~a~~~Gad~v~~~~--P~y------------~~~--~----------------~~~i~~----------~~~~v 122 (288)
T cd00954 85 SQELAKHAEELGYDAISAIT--PFY------------YKF--S----------------FEEIKD----------YYREI 122 (288)
T ss_pred HHHHHHHHHHcCCCEEEEeC--CCC------------CCC--C----------------HHHHHH----------HHHHH
Confidence 77888999999999998632 221 000 0 000111 12366
Q ss_pred Hhhc-CCCEEEEec-------CCHHHHHHHHHcCCcEEEEcCCCCCCCCCccchHHHHHHHHHHhcCCCcEEEecCCCCH
Q 017718 218 QTIT-KLPILVKGV-------LTAEDARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRG 289 (367)
Q Consensus 218 ~~~~-~~Pv~vK~v-------~~~~~a~~~~~~G~d~i~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~~~via~GGI~~~ 289 (367)
.+.+ ++||++=.. .+++...++.+.. ..+-+= +.. .....+.++.+..+.++.|+. |. .
T Consensus 123 ~~a~~~lpi~iYn~P~~tg~~l~~~~~~~L~~~p-nivgiK-------~s~-~d~~~~~~~~~~~~~~~~v~~-G~---d 189 (288)
T cd00954 123 IAAAASLPMIIYHIPALTGVNLTLEQFLELFEIP-NVIGVK-------FTA-TDLYDLERIRAASPEDKLVLN-GF---D 189 (288)
T ss_pred HHhcCCCCEEEEeCccccCCCCCHHHHHHHhcCC-CEEEEE-------eCC-CCHHHHHHHHHhCCCCcEEEE-ec---h
Confidence 6678 789987654 4677777777632 222221 111 123344455555444555553 32 3
Q ss_pred HHHHHHHHcCCCEEEechHH
Q 017718 290 TDVFKALALGASGIFIGRPV 309 (367)
Q Consensus 290 ~dv~kal~lGAd~V~ig~~~ 309 (367)
.-+..++.+||++++.|..-
T Consensus 190 ~~~~~~~~~G~~G~i~~~~n 209 (288)
T cd00954 190 EMLLSALALGADGAIGSTYN 209 (288)
T ss_pred HHHHHHHHcCCCEEEeChhh
Confidence 45667888999999888643
|
It has a widespread application as biocatalyst for the synthesis of sialic acid and its derivatives. This enzyme has been shown to be quite specific for pyruvate as the donor, but flexible to a variety of D- and, to some extent, L-hexoses and pentoses as acceptor substrates. NAL is member of dihydrodipicolinate synthase family that comprises several pyruvate-dependent class I aldolases. |
| >PRK08318 dihydropyrimidine dehydrogenase subunit B; Validated | Back alignment and domain information |
|---|
Probab=86.85 E-value=5.6 Score=40.22 Aligned_cols=107 Identities=21% Similarity=0.241 Sum_probs=57.8
Q ss_pred CceEEEEeecCCHHHHHHHHHHHHHcCCcEEEEecCCCCCCchhHHhhhhcCCCCccccccccccccCccccccchhhHH
Q 017718 123 GIRFFQLYVYKDRNVVAQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLTLKNFQGLDLGKMDEANDSGLAA 202 (367)
Q Consensus 123 ~~~~~QLy~~~d~~~~~~~l~ra~~~G~~ai~itvd~p~~g~r~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~ 202 (367)
.|.++.|-+ +...+.++++.++++|++++.++ |+-. +.-.-|+.+.-..|. +..++ ..+..++
T Consensus 169 ~Pv~vKl~p--~~~~~~~~a~~~~~~Gadgi~~~-Nt~~-~~~~id~~~~~~~p~-~~~~~---------~~gg~SG--- 231 (420)
T PRK08318 169 LPVIVKLTP--NITDIREPARAAKRGGADAVSLI-NTIN-SITGVDLDRMIPMPI-VNGKS---------SHGGYCG--- 231 (420)
T ss_pred CcEEEEcCC--CcccHHHHHHHHHHCCCCEEEEe-cccC-ccccccccccCCCce-ecCCC---------Ccccccc---
Confidence 578888863 33346788899999999998853 2211 000001110000000 00000 0000000
Q ss_pred HhhhccCccccHH---HHHhhc---CCCEE-EEecCCHHHHHHHHHcCCcEEEEc
Q 017718 203 YVAGQIDRSLSWK---WLQTIT---KLPIL-VKGVLTAEDARIAVQAGAAGIIVS 250 (367)
Q Consensus 203 ~~~~~~d~~~~~~---~l~~~~---~~Pv~-vK~v~~~~~a~~~~~~G~d~i~vs 250 (367)
.....+.|+ .+++.+ ++||+ +.++.+.+||...+.+|||+|.+.
T Consensus 232 ----~a~~p~~l~~v~~~~~~~~~~~ipIig~GGI~s~~da~e~i~aGA~~Vqi~ 282 (420)
T PRK08318 232 ----PAVKPIALNMVAEIARDPETRGLPISGIGGIETWRDAAEFILLGAGTVQVC 282 (420)
T ss_pred ----hhhhHHHHHHHHHHHhccccCCCCEEeecCcCCHHHHHHHHHhCCChheee
Confidence 011223565 555655 68987 445789999999999999999883
|
|
| >cd03316 MR_like Mandelate racemase (MR)-like subfamily of the enolase superfamily | Back alignment and domain information |
|---|
Probab=86.77 E-value=12 Score=36.75 Aligned_cols=81 Identities=12% Similarity=0.068 Sum_probs=54.1
Q ss_pred HHHhhc--CCCEEEEec--CCHHHHHH----HHHcCCcEEEEcCCCCCCCCCccchHHHHHHHHHHhcCCCcEEEecCCC
Q 017718 216 WLQTIT--KLPILVKGV--LTAEDARI----AVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVR 287 (367)
Q Consensus 216 ~l~~~~--~~Pv~vK~v--~~~~~a~~----~~~~G~d~i~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~~~via~GGI~ 287 (367)
.+|+.. +.++.+..- .+.++|.. +.+.+++.|-- ...+..++.+.++++.. .+||+++..+.
T Consensus 181 ~ir~~~g~~~~l~vDaN~~~~~~~a~~~~~~l~~~~i~~iEq--------P~~~~~~~~~~~l~~~~--~ipi~~dE~~~ 250 (357)
T cd03316 181 AVREAVGPDVDLMVDANGRWDLAEAIRLARALEEYDLFWFEE--------PVPPDDLEGLARLRQAT--SVPIAAGENLY 250 (357)
T ss_pred HHHHhhCCCCEEEEECCCCCCHHHHHHHHHHhCccCCCeEcC--------CCCccCHHHHHHHHHhC--CCCEEeccccc
Confidence 666665 467777653 35566543 34445444321 01122566777777765 79999999999
Q ss_pred CHHHHHHHHHcC-CCEEEec
Q 017718 288 RGTDVFKALALG-ASGIFIG 306 (367)
Q Consensus 288 ~~~dv~kal~lG-Ad~V~ig 306 (367)
+..|+.+++..| +|.|++-
T Consensus 251 ~~~~~~~~i~~~~~d~v~~k 270 (357)
T cd03316 251 TRWEFRDLLEAGAVDIIQPD 270 (357)
T ss_pred cHHHHHHHHHhCCCCEEecC
Confidence 999999999876 8888764
|
Enzymes of this subgroup share three conserved carboxylate ligands for the essential divalent metal ion (usually Mg2+), two aspartates and a glutamate, and conserved catalytic residues, a Lys-X-Lys motif and a conserved histidine-aspartate dyad. Members of the MR subgroup are mandelate racemase, D-glucarate/L-idarate dehydratase (GlucD), D-altronate/D-mannonate dehydratase , D-galactonate dehydratase (GalD) , D-gluconate dehydratase (GlcD), and L-rhamnonate dehydratase (RhamD). |
| >TIGR00742 yjbN tRNA dihydrouridine synthase A | Back alignment and domain information |
|---|
Probab=86.69 E-value=7.7 Score=37.90 Aligned_cols=91 Identities=14% Similarity=0.202 Sum_probs=56.4
Q ss_pred CCceEEEEeecCCH----HHHHHHHHHHHHcCCcEEEEecCCCCCCchhHHhhhhcCCCCccccccccccccCccccccc
Q 017718 122 PGIRFFQLYVYKDR----NVVAQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLTLKNFQGLDLGKMDEAND 197 (367)
Q Consensus 122 ~~~~~~QLy~~~d~----~~~~~~l~ra~~~G~~ai~itvd~p~~g~r~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~ 197 (367)
+.|..+.+-.+.+. +...++++.++++|+++|.||--+.. .+++. ++ .+
T Consensus 123 ~~PVsvKiR~g~~~~~~~~~~~~~~~~l~~~G~~~itvHgRt~~--------~qg~s-g~----~~-------------- 175 (318)
T TIGR00742 123 NIPVTVKHRIGIDPLDSYEFLCDFVEIVSGKGCQNFIVHARKAW--------LSGLS-PK----EN-------------- 175 (318)
T ss_pred CCCeEEEEecCCCCcchHHHHHHHHHHHHHcCCCEEEEeCCchh--------hcCCC-cc----cc--------------
Confidence 35677777543321 45567788889999999888765431 01111 00 00
Q ss_pred hhhHHHhhhccCccccHH---HHHhhc-CCCEEEEe-cCCHHHHHHHHHcCCcEEEE
Q 017718 198 SGLAAYVAGQIDRSLSWK---WLQTIT-KLPILVKG-VLTAEDARIAVQAGAAGIIV 249 (367)
Q Consensus 198 ~~~~~~~~~~~d~~~~~~---~l~~~~-~~Pv~vK~-v~~~~~a~~~~~~G~d~i~v 249 (367)
.. -+..+|+ .+++.. ++||+.=+ +.+.+++....+ |+|+|.+
T Consensus 176 --------~~-~~~~~~~~i~~vk~~~~~ipVi~NGdI~s~~da~~~l~-g~dgVMi 222 (318)
T TIGR00742 176 --------RE-IPPLRYERVYQLKKDFPHLTIEINGGIKNSEQIKQHLS-HVDGVMV 222 (318)
T ss_pred --------cc-CCchhHHHHHHHHHhCCCCcEEEECCcCCHHHHHHHHh-CCCEEEE
Confidence 00 0123676 566666 79987544 588999998886 9999988
|
Members of this family show a distant relationship to alpha/beta (TIM) barrel enzymes such as dihydroorotate dehydrogenase and glycolate oxidase. |
| >TIGR03586 PseI pseudaminic acid synthase | Back alignment and domain information |
|---|
Probab=86.60 E-value=17 Score=35.67 Aligned_cols=77 Identities=10% Similarity=0.214 Sum_probs=57.0
Q ss_pred HhhcCCCEEEEecCCHHHHHHHHHcCCcEEEEcCCCCCCCCCccchHHHHHHHHHHhcCCCcEEEecCCCCHHHHHHHHH
Q 017718 218 QTITKLPILVKGVLTAEDARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALA 297 (367)
Q Consensus 218 ~~~~~~Pv~vK~v~~~~~a~~~~~~G~d~i~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~~~via~GGI~~~~dv~kal~ 297 (367)
.+..+++++ -.+.+.+.+..+.+.|++.+-+.. +-...+.+|..+.+. ..|||.+-|..+-+++..++.
T Consensus 86 ~~~~Gi~~~-stpfd~~svd~l~~~~v~~~KI~S-------~~~~n~~LL~~va~~---gkPvilstG~~t~~Ei~~Av~ 154 (327)
T TIGR03586 86 AKELGLTIF-SSPFDETAVDFLESLDVPAYKIAS-------FEITDLPLIRYVAKT---GKPIIMSTGIATLEEIQEAVE 154 (327)
T ss_pred HHHhCCcEE-EccCCHHHHHHHHHcCCCEEEECC-------ccccCHHHHHHHHhc---CCcEEEECCCCCHHHHHHHHH
Confidence 455688875 467889999999999999999832 122356677776552 689999999999999887775
Q ss_pred ----cCCCEEEe
Q 017718 298 ----LGASGIFI 305 (367)
Q Consensus 298 ----lGAd~V~i 305 (367)
.|..-|.+
T Consensus 155 ~i~~~g~~~i~L 166 (327)
T TIGR03586 155 ACREAGCKDLVL 166 (327)
T ss_pred HHHHCCCCcEEE
Confidence 47744555
|
|
| >COG0176 MipB Transaldolase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=86.57 E-value=28 Score=32.58 Aligned_cols=104 Identities=20% Similarity=0.227 Sum_probs=73.4
Q ss_pred CCCEEEEecCCHHHHHHHHHcCCcEEEEcCCCCCCCCCccchHHHHHHH---HHHhcCC-CcEEEecCCCCHHHHHHHHH
Q 017718 222 KLPILVKGVLTAEDARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEV---VKATQGR-IPVFLDGGVRRGTDVFKALA 297 (367)
Q Consensus 222 ~~Pv~vK~v~~~~~a~~~~~~G~d~i~vs~~gg~~~~~~~~~~~~l~~i---~~~~~~~-~~via~GGI~~~~dv~kal~ 297 (367)
++++-+-.+.|...|..+.++|++.|... =||-.|++......+.++ .+..... ..+++. +++++.++..+..
T Consensus 115 GI~~NvTLiFS~~QAl~aa~aga~~iSpF--vgRi~D~~~d~~~~I~~~~~iy~~y~~~~~~t~va-s~~~~~~~~~~~l 191 (239)
T COG0176 115 GIKTNVTLIFSAAQALLAAEAGATYISPF--VGRIDDWGIDGMLGIAEAREIYDYYKQHGAKTLVA-SARFPNHVYIAAL 191 (239)
T ss_pred CCeeeEEEEecHHHHHHHHHhCCeEEEee--cchHHhhccCchHHHHHHHHHHHHhccccceEEEe-cCccHHHHHHHHH
Confidence 68888888899999999999999887763 355455554444444444 4333223 456665 4999999999999
Q ss_pred cCCCEEEechHHHHHhhccC--------hHHHHHHHHHH
Q 017718 298 LGASGIFIGRPVVYSLAAEG--------EKGVRRVLEML 328 (367)
Q Consensus 298 lGAd~V~ig~~~l~~l~~~G--------~~~v~~~i~~l 328 (367)
+|||.+-+.-..+-.+..++ .+|++.+.+.+
T Consensus 192 ~G~d~~Tip~~~l~~l~~~~~~~~~~l~~eGI~~F~~D~ 230 (239)
T COG0176 192 AGADVLTIPPDLLKQLLKHGGAMAVPLLDEGIRKFAKDW 230 (239)
T ss_pred hCCCcccCCHHHHHHHHhcccccccHHHHHHHHHHHHHH
Confidence 99999999988887766553 24555555444
|
|
| >cd06557 KPHMT-like Ketopantoate hydroxymethyltransferase (KPHMT) is the first enzyme in the pantothenate biosynthesis pathway | Back alignment and domain information |
|---|
Probab=86.49 E-value=3.6 Score=38.93 Aligned_cols=82 Identities=17% Similarity=0.178 Sum_probs=54.4
Q ss_pred CCCEEEEecCCHHHHHHHHHcCCcEEEEcCCCCC----CCCCccchHHH-H---HHHHHHhcCCCc-EEEecC---CCC-
Q 017718 222 KLPILVKGVLTAEDARIAVQAGAAGIIVSNHGAR----QLDYVPATIMA-L---EEVVKATQGRIP-VFLDGG---VRR- 288 (367)
Q Consensus 222 ~~Pv~vK~v~~~~~a~~~~~~G~d~i~vs~~gg~----~~~~~~~~~~~-l---~~i~~~~~~~~~-via~GG---I~~- 288 (367)
+.|+++=.+-+.-.|+.+.++|+|.|.++...+. ..|.+.-+++- + +.+.+.+ +.| |++|-+ ..+
T Consensus 11 ~~~l~~~~ayD~~sA~l~e~aG~d~i~vGds~~~~~lG~pDt~~vtl~em~~~~~~V~r~~--~~p~viaD~~fg~y~~~ 88 (254)
T cd06557 11 GEKIVMLTAYDYPTAKLADEAGVDVILVGDSLGMVVLGYDSTLPVTLDEMIYHTRAVRRGA--PRALVVADMPFGSYQTS 88 (254)
T ss_pred CCcEEEEeCCCHHHHHHHHHcCCCEEEECHHHHHHHcCCCCCCCcCHHHHHHHHHHHHhcC--CCCeEEEeCCCCcccCC
Confidence 5688888888899999999999999975322111 13444444433 3 3333333 678 888765 434
Q ss_pred HHH----HHHHHH-cCCCEEEe
Q 017718 289 GTD----VFKALA-LGASGIFI 305 (367)
Q Consensus 289 ~~d----v~kal~-lGAd~V~i 305 (367)
.++ +.+.+. .||++|.|
T Consensus 89 ~~~av~~a~r~~~~aGa~aVki 110 (254)
T cd06557 89 PEQALRNAARLMKEAGADAVKL 110 (254)
T ss_pred HHHHHHHHHHHHHHhCCeEEEE
Confidence 444 567777 99999999
|
Ketopantoate hydroxymethyltransferase (KPHMT) catalyzes the first committed step in the biosynthesis of pantothenate (vitamin B5), which is a precursor to coenzyme A and is required for penicillin biosynthesis. |
| >PLN02495 oxidoreductase, acting on the CH-CH group of donors | Back alignment and domain information |
|---|
Probab=86.48 E-value=6.5 Score=39.48 Aligned_cols=94 Identities=14% Similarity=0.139 Sum_probs=58.6
Q ss_pred HHHhhc-CCCEEEEec--CCHH----HHHHHHHcCCcEEEEcC---CCCCCCCCcc---chHHHHHHHHHHhcC--CCcE
Q 017718 216 WLQTIT-KLPILVKGV--LTAE----DARIAVQAGAAGIIVSN---HGARQLDYVP---ATIMALEEVVKATQG--RIPV 280 (367)
Q Consensus 216 ~l~~~~-~~Pv~vK~v--~~~~----~a~~~~~~G~d~i~vs~---~gg~~~~~~~---~~~~~l~~i~~~~~~--~~~v 280 (367)
.+++.+ ++|||+=+. .+.+ .++.+.++|+|+|.+-- |+....+.+. ...+.+.++.++++. ++||
T Consensus 106 ~~k~~~~~~pvIaSi~~~~s~~~~~~~a~~~e~~GaD~iELNiSCPn~~~~r~~g~~~gq~~e~~~~i~~~Vk~~~~iPv 185 (385)
T PLN02495 106 QLKEEYPDRILIASIMEEYNKDAWEEIIERVEETGVDALEINFSCPHGMPERKMGAAVGQDCDLLEEVCGWINAKATVPV 185 (385)
T ss_pred HHHhhCCCCcEEEEccCCCCHHHHHHHHHHHHhcCCCEEEEECCCCCCCCcCccchhhccCHHHHHHHHHHHHHhhcCce
Confidence 455556 579988773 3543 37888999999999732 2210011111 134555555444432 6899
Q ss_pred EE--ecCCCCHHHHHHHH-HcCCCEEEechHH
Q 017718 281 FL--DGGVRRGTDVFKAL-ALGASGIFIGRPV 309 (367)
Q Consensus 281 ia--~GGI~~~~dv~kal-~lGAd~V~ig~~~ 309 (367)
++ +-.+.+-.++++++ ..|||+|.+-..+
T Consensus 186 ~vKLsPn~t~i~~ia~aa~~~Gadgi~liNT~ 217 (385)
T PLN02495 186 WAKMTPNITDITQPARVALKSGCEGVAAINTI 217 (385)
T ss_pred EEEeCCChhhHHHHHHHHHHhCCCEEEEeccc
Confidence 98 55677778888844 5899999886544
|
|
| >cd04738 DHOD_2_like Dihydroorotate dehydrogenase (DHOD) class 2 | Back alignment and domain information |
|---|
Probab=86.14 E-value=3.3 Score=40.51 Aligned_cols=100 Identities=23% Similarity=0.174 Sum_probs=59.1
Q ss_pred CceEEEEeecCCHHHHHHHHHHHHHcCCcEEEEecCCCCCCchhHHhhhhcCCCCccccccccccccCccccccchhhHH
Q 017718 123 GIRFFQLYVYKDRNVVAQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLTLKNFQGLDLGKMDEANDSGLAA 202 (367)
Q Consensus 123 ~~~~~QLy~~~d~~~~~~~l~ra~~~G~~ai~itvd~p~~g~r~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~ 202 (367)
-|.++.|-...+.+.+.++++.++++|+++|.++-..... . . ..-|. ..+. .+..++.
T Consensus 203 ~Pv~vKl~~~~~~~~~~~ia~~l~~aGad~I~~~n~~~~~--~---~---~~~~~---~~~~---------~gG~sG~-- 260 (327)
T cd04738 203 VPLLVKIAPDLSDEELEDIADVALEHGVDGIIATNTTISR--P---G---LLRSP---LANE---------TGGLSGA-- 260 (327)
T ss_pred CCeEEEeCCCCCHHHHHHHHHHHHHcCCcEEEEECCcccc--c---c---ccccc---ccCC---------CCccCCh--
Confidence 4788888654455567888999999999999876432210 0 0 00000 0000 0000000
Q ss_pred HhhhccCccccHH---HHHhhc--CCCEEEE-ecCCHHHHHHHHHcCCcEEEE
Q 017718 203 YVAGQIDRSLSWK---WLQTIT--KLPILVK-GVLTAEDARIAVQAGAAGIIV 249 (367)
Q Consensus 203 ~~~~~~d~~~~~~---~l~~~~--~~Pv~vK-~v~~~~~a~~~~~~G~d~i~v 249 (367)
......|+ .+++.. ++||+.- ++.+.+++.....+|||.+.+
T Consensus 261 -----~~~~~~l~~v~~l~~~~~~~ipIi~~GGI~t~~da~e~l~aGAd~V~v 308 (327)
T cd04738 261 -----PLKERSTEVLRELYKLTGGKIPIIGVGGISSGEDAYEKIRAGASLVQL 308 (327)
T ss_pred -----hhhHHHHHHHHHHHHHhCCCCcEEEECCCCCHHHHHHHHHcCCCHHhc
Confidence 00111233 677777 6898744 468999999999999999987
|
DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences, their cellular location and their natural electron acceptor used to reoxidize the flavin group. Members of class 1 are cytosolic enzymes and multimers, while class 2 enzymes are membrane associated, monomeric and use respiratory quinones as their physiological electron acceptors. |
| >TIGR00559 pdxJ pyridoxine 5'-phosphate synthase | Back alignment and domain information |
|---|
Probab=85.87 E-value=29 Score=32.39 Aligned_cols=94 Identities=19% Similarity=0.110 Sum_probs=67.6
Q ss_pred HHHHHhhcCCCEEEEecCCHHHHHHHHHcCCcEEEEcCCCCC--CCCCcc---chHHHHHHHHHHhc---CCCcEEEecC
Q 017718 214 WKWLQTITKLPILVKGVLTAEDARIAVQAGAAGIIVSNHGAR--QLDYVP---ATIMALEEVVKATQ---GRIPVFLDGG 285 (367)
Q Consensus 214 ~~~l~~~~~~Pv~vK~v~~~~~a~~~~~~G~d~i~vs~~gg~--~~~~~~---~~~~~l~~i~~~~~---~~~~via~GG 285 (367)
...|++..+.|+-+-+..+.+....+.+.-.+.+++----.. +-++|. ...+.|.++.+.++ -++.+|.|-
T Consensus 54 v~~l~~~~~~~lNlE~a~~~emi~ia~~vkP~~vtLVPEkr~ElTTegGldv~~~~~~l~~~i~~l~~~gI~VSLFiDP- 132 (237)
T TIGR00559 54 VYDLKEALTTPFNIEMAPTEEMIRIAEEIKPEQVTLVPEARDEVTTEGGLDVARLKDKLCELVKRFHAAGIEVSLFIDA- 132 (237)
T ss_pred HHHHHHHcCCCEEeccCCCHHHHHHHHHcCCCEEEECCCCCCCccCCcCchhhhCHHHHHHHHHHHHHCCCEEEEEeCC-
Confidence 346777777899888889999999999999999998532111 112222 23455666555443 268889887
Q ss_pred CCCHHHHHHHHHcCCCEEEechHHH
Q 017718 286 VRRGTDVFKALALGASGIFIGRPVV 310 (367)
Q Consensus 286 I~~~~dv~kal~lGAd~V~ig~~~l 310 (367)
+.+++..+..+|||.|-+-+.-+
T Consensus 133 --~~~qi~~A~~~GAd~VELhTG~Y 155 (237)
T TIGR00559 133 --DKDQISAAAEVGADRIEIHTGPY 155 (237)
T ss_pred --CHHHHHHHHHhCcCEEEEechhh
Confidence 58889999999999999998554
|
PdxJ is required in the biosynthesis of pyridoxine (vitamin B6), a precursor to the enzyme cofactor pyridoxal phosphate. ECOCYC describes the predicted reaction equation as 1-amino-propan-2-one-3-phosphate + deoxyxylulose-5-phosphate = pyridoxine-5'-phosphate. The product of that reaction is oxidized by PdxH to pyridoxal 5'-phosphate. |
| >PF03740 PdxJ: Pyridoxal phosphate biosynthesis protein PdxJ; InterPro: IPR004569 Pyridoxal phosphate is the active form of vitamin B6 (pyridoxine or pyridoxal) | Back alignment and domain information |
|---|
Probab=85.80 E-value=31 Score=32.30 Aligned_cols=96 Identities=18% Similarity=0.173 Sum_probs=62.5
Q ss_pred cHHHHHhhcCCCEEEEecCCHHHHHHHHHcCCcEEEEcCCCCC--CCCCcc---chHHHHHHHHHHhc---CCCcEEEec
Q 017718 213 SWKWLQTITKLPILVKGVLTAEDARIAVQAGAAGIIVSNHGAR--QLDYVP---ATIMALEEVVKATQ---GRIPVFLDG 284 (367)
Q Consensus 213 ~~~~l~~~~~~Pv~vK~v~~~~~a~~~~~~G~d~i~vs~~gg~--~~~~~~---~~~~~l~~i~~~~~---~~~~via~G 284 (367)
+...|++..+.|+-+-+..+.+....+.+.-.+.+++---..- +-++|. ...+.|.++.+.++ -++.+|.+=
T Consensus 54 Dv~~L~~~~~~~lNlE~a~t~e~~~ia~~~kP~~vtLVPE~r~e~TTegGldv~~~~~~l~~~i~~L~~~gIrvSLFiDP 133 (239)
T PF03740_consen 54 DVRRLRELVKTPLNLEMAPTEEMVDIALKVKPDQVTLVPEKREELTTEGGLDVAGNRDRLKPVIKRLKDAGIRVSLFIDP 133 (239)
T ss_dssp HHHHHHHH-SSEEEEEEESSHHHHHHHHHH--SEEEEE--SGGGBSTTSSB-TCGGHHHHHHHHHHHHHTT-EEEEEE-S
T ss_pred HHHHHHHHcccCEEeccCCCHHHHHHHHhCCcCEEEECCCCCCCcCCCcCChhhcCHHHHHHHHHHHHhCCCEEEEEeCC
Confidence 3447777788899998889999999999999999998431111 111221 23455555554442 368888887
Q ss_pred CCCCHHHHHHHHHcCCCEEEechHHHH
Q 017718 285 GVRRGTDVFKALALGASGIFIGRPVVY 311 (367)
Q Consensus 285 GI~~~~dv~kal~lGAd~V~ig~~~l~ 311 (367)
+.+++..|..+|||.|-+-+.-+-
T Consensus 134 ---~~~qi~~A~~~Gad~VELhTG~yA 157 (239)
T PF03740_consen 134 ---DPEQIEAAKELGADRVELHTGPYA 157 (239)
T ss_dssp ----HHHHHHHHHTT-SEEEEETHHHH
T ss_pred ---CHHHHHHHHHcCCCEEEEehhHhh
Confidence 488899999999999999996644
|
Pyridoxal 5'-phosphate (PLP) is a versatile catalyst, acting as a coenzyme in a multitude of reactions, including decarboxylation, deamination and transamination [, , ]. PLP-dependent enzymes are primarily involved in the biosynthesis of amino acids and amino acid-derived metabolites, but they are also found in the biosynthetic pathways of amino sugars and in the synthesis or catabolism of neurotransmitters; pyridoxal phosphate can also inhibit DNA polymerases and several steroid receptors []. Inadequate levels of pyridoxal phosphate in the brain can cause neurological dysfunction, particularly epilepsy []. PLP enzymes exist in their resting state as a Schiff base, the aldehyde group of PLP forming a linkage with the epsilon-amino group of an active site lysine residue on the enzyme. The alpha-amino group of the substrate displaces the lysine epsilon-amino group, in the process forming a new aldimine with the substrate. This aldimine is the common central intermediate for all PLP-catalysed reactions, enzymatic and non-enzymatic []. In Escherichia coli, the pdx genes involved in vitamin B6 have been characterised [, , ]. This entry represents PdxJ, which catalyses the condensation of 1-amino-3-oxo-4-(phosphohydroxy)propan-2-one and 1-deoxy-D-xylulose-5-phosphate to form pyridoxine-5'-phosphate. The product of the PdxJ reaction is then oxidized by PdxH to pyridoxal 5'-phosphate.; GO: 0008615 pyridoxine biosynthetic process, 0005737 cytoplasm; PDB: 3F4N_B 3O6D_A 3O6C_A 1M5W_G 1IXQ_D 1IXP_B 1IXN_A 1HO4_C 1HO1_A 1IXO_D .... |
| >PF03437 BtpA: BtpA family; InterPro: IPR005137 Photosystem I (PSI) is a large protein complex embedded within the photosynthetic thylakoid membrane | Back alignment and domain information |
|---|
Probab=85.73 E-value=4.5 Score=38.24 Aligned_cols=72 Identities=29% Similarity=0.337 Sum_probs=43.3
Q ss_pred HHHHHHHHHcCCcEEEEcCCCCC--CCCCccchHHHHH----HHHHHhcCCCcEEEecCCC-CHH-HHHHHHHcCCCEEE
Q 017718 233 AEDARIAVQAGAAGIIVSNHGAR--QLDYVPATIMALE----EVVKATQGRIPVFLDGGVR-RGT-DVFKALALGASGIF 304 (367)
Q Consensus 233 ~~~a~~~~~~G~d~i~vs~~gg~--~~~~~~~~~~~l~----~i~~~~~~~~~via~GGI~-~~~-dv~kal~lGAd~V~ 304 (367)
.++|+.+.+.|+|+|++.|.+.. ....++.+...+. ++++.+ ++|+=. -=++ ++. -+.-|.+.|||+|-
T Consensus 32 ~~ea~~l~~~GvDgiiveN~~D~Py~~~~~~etvaaM~~i~~~v~~~~--~~p~GV-nvL~nd~~aalaiA~A~ga~FIR 108 (254)
T PF03437_consen 32 VREAEALEEGGVDGIIVENMGDVPYPKRVGPETVAAMARIAREVRREV--SVPVGV-NVLRNDPKAALAIAAATGADFIR 108 (254)
T ss_pred HHHHHHHHHCCCCEEEEecCCCCCccCCCCHHHHHHHHHHHHHHHHhC--CCCEEe-eeecCCCHHHHHHHHHhCCCEEE
Confidence 37899999999999999997654 2233444444443 334443 455311 1123 222 23445568999998
Q ss_pred ech
Q 017718 305 IGR 307 (367)
Q Consensus 305 ig~ 307 (367)
+..
T Consensus 109 v~~ 111 (254)
T PF03437_consen 109 VNV 111 (254)
T ss_pred ecC
Confidence 763
|
It consists of 11 subunits, ~100 chlorophyll a molecules, 2 phylloquinones, and 3 Fe4S4-clusters. The three dimensional structure of the PSI complex has been resolved at 2.5 A [], which allows the precise localisation of each cofactor. PSI together with photosystem II (PSII) catalyses the light-induced steps in oxygenic photosynthesis - a process found in cyanobacteria, eukaryotic algae (e.g. red algae, green algae) and higher plants. To date, three thylakoid proteins involved in the stable accumulation of PSI have been identified: BtpA [], Ycf3 [, ], and Ycf4 (IPR003359 from INTERPRO) []. Because translation of the psaA and psaB mRNAs encoding the two reaction centre polypeptides, of PSI and PSII respectively, is not affected in mutant strains lacking functional ycf3 and ycf4, the products of these two genes appear to act at a post-translational step of PSI biosynthesis. These gene products are therefore involved either in the stabilisation or in the assembly of the PSI complex. However, their exact roles remain unknown. The BtpA protein appears to act at the level of PSI stabilisation []. It is an extrinsic membrane protein located on the cytoplasmic side of the thylakoid membrane [, ]. Homologs of BtpA are found in the crenarchaeota and euryarchaeota, where their function remains unknown. The Ycf4 protein is firmly associated with the thylakoid membrane, presumably through a transmembrane domain []. Ycf4 co-fractionates with a protein complex larger than PSI upon sucrose density gradient centrifugation of solubilised thylakoids []. The Ycf3 protein is loosely associated with the thylakoid membrane and can be released from the membrane with sodium carbonate. This suggests that Ycf3 is not part of a stable complex and that it probably interacts transiently with its partners []. Ycf3 contains a number of tetratrico peptide repeats (TPR, IPR001440 from INTERPRO); TPR is a structural motif present in a wide range of proteins, which mediates protein-protein interactions. |
| >TIGR00693 thiE thiamine-phosphate pyrophosphorylase | Back alignment and domain information |
|---|
Probab=85.58 E-value=12 Score=33.34 Aligned_cols=75 Identities=20% Similarity=0.185 Sum_probs=49.2
Q ss_pred HHHhhcCCCEEEEecCCHHHHHHHHHcCCcEEEEcCCCCCCCCCccchHHHHHHHHHHhcCCCcEEEecCCCCHHHHHHH
Q 017718 216 WLQTITKLPILVKGVLTAEDARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKA 295 (367)
Q Consensus 216 ~l~~~~~~Pv~vK~v~~~~~a~~~~~~G~d~i~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~~~via~GGI~~~~dv~ka 295 (367)
.+.+.++.|+++-. +.+.+.+.|+|++.+... .+ .. ..+++..+ . ..+....+++.+++.++
T Consensus 51 ~~~~~~~~~l~i~~-----~~~la~~~g~~GvHl~~~---~~-----~~---~~~r~~~~-~-~~~ig~s~h~~~e~~~a 112 (196)
T TIGR00693 51 ELCRRYGVPFIVND-----RVDLALALGADGVHLGQD---DL-----PA---SEARALLG-P-DKIIGVSTHNLEELAEA 112 (196)
T ss_pred HHHHHhCCeEEEEC-----HHHHHHHcCCCEEecCcc---cC-----CH---HHHHHhcC-C-CCEEEEeCCCHHHHHHH
Confidence 33345678888843 567788999999988321 11 11 22222232 1 23445669999999999
Q ss_pred HHcCCCEEEechH
Q 017718 296 LALGASGIFIGRP 308 (367)
Q Consensus 296 l~lGAd~V~ig~~ 308 (367)
..+|||.+.+|.-
T Consensus 113 ~~~g~dyi~~~~v 125 (196)
T TIGR00693 113 EAEGADYIGFGPI 125 (196)
T ss_pred hHcCCCEEEECCc
Confidence 9999999999853
|
This model includes ThiE from Bacillus subtilis but excludes its paralog, the regulatory protein TenI, and neighbors of TenI. |
| >COG2070 Dioxygenases related to 2-nitropropane dioxygenase [General function prediction only] | Back alignment and domain information |
|---|
Probab=85.57 E-value=12 Score=36.82 Aligned_cols=114 Identities=21% Similarity=0.289 Sum_probs=69.8
Q ss_pred hHHHHHHHHHcCCceeecCCCCCCHHHHHhhCC-CceEEEEeecCCHHHHHHHHHHHHHcCCcEEEEecCCCCCCchhHH
Q 017718 90 EYATARAASAAGTIMTLSSWSTSSVEEVASTGP-GIRFFQLYVYKDRNVVAQLVRRAERAGFKAIALTVDTPRLGRREAD 168 (367)
Q Consensus 90 e~~~a~aa~~~G~~~~vs~~~~~~~e~i~~~~~-~~~~~QLy~~~d~~~~~~~l~ra~~~G~~ai~itvd~p~~g~r~~~ 168 (367)
+..+--.+..+|++.+..++...+-+.+..... +...+.... +....+++++.|.++++. ..+-.|
T Consensus 93 ~~~~~~ii~~~~vpvv~~~~g~~~~~~i~~~~~~g~~v~~~v~------~~~~A~~~~~~G~d~vI~--~g~eAG----- 159 (336)
T COG2070 93 EAGVDAIIEGAGVPVVSTSFGAPPAEFVARLKAAGIKVIHSVI------TVREALKAERAGADAVIA--QGAEAG----- 159 (336)
T ss_pred HHhhhhHHhcCCCCEEeccCCCCcHHHHHHHHHcCCeEEEEeC------CHHHHHHHHhCCCCEEEe--cCCcCC-----
Confidence 445666677779999888776444444433211 333333332 234578899999999875 111000
Q ss_pred hhhhcCCCCccccccccccccCccccccchhhHHHhhh-ccCcc-cc-HHHHHhhcC-CCEEEEec-CCHHHHHHHHHcC
Q 017718 169 IKNRFTLPPFLTLKNFQGLDLGKMDEANDSGLAAYVAG-QIDRS-LS-WKWLQTITK-LPILVKGV-LTAEDARIAVQAG 243 (367)
Q Consensus 169 ~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~d~~-~~-~~~l~~~~~-~Pv~vK~v-~~~~~a~~~~~~G 243 (367)
| |... ....+ +. +..+++..+ +||+.-+. .+.+++..+...|
T Consensus 160 ---------G------------------------H~g~~~~~~~t~~Lv~ev~~~~~~iPViAAGGI~dg~~i~AAlalG 206 (336)
T COG2070 160 ---------G------------------------HRGGVDLEVSTFALVPEVVDAVDGIPVIAAGGIADGRGIAAALALG 206 (336)
T ss_pred ---------C------------------------cCCCCCCCccHHHHHHHHHHHhcCCCEEEecCccChHHHHHHHHhc
Confidence 0 0000 00111 12 237778888 89999885 7889999999999
Q ss_pred CcEEEE
Q 017718 244 AAGIIV 249 (367)
Q Consensus 244 ~d~i~v 249 (367)
|+++.+
T Consensus 207 A~gVq~ 212 (336)
T COG2070 207 ADGVQM 212 (336)
T ss_pred cHHHHh
Confidence 999987
|
|
| >PRK13533 7-cyano-7-deazaguanine tRNA-ribosyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=85.47 E-value=18 Score=37.57 Aligned_cols=182 Identities=17% Similarity=0.115 Sum_probs=101.8
Q ss_pred HHHHHcCCceeecCCCCC--CHHHHHhhC----------C---CceEEEEeecCCHHHH-HHHHHHHHHcCCcEEEEecC
Q 017718 95 RAASAAGTIMTLSSWSTS--SVEEVASTG----------P---GIRFFQLYVYKDRNVV-AQLVRRAERAGFKAIALTVD 158 (367)
Q Consensus 95 ~aa~~~G~~~~vs~~~~~--~~e~i~~~~----------~---~~~~~QLy~~~d~~~~-~~~l~ra~~~G~~ai~itvd 158 (367)
+..++.|+-+++++.-.. ..+++.... + +...||++...+..++ ++.++--++.|++.+ +.+|
T Consensus 45 ~~l~~~g~~~il~NtYhl~~r~~~~~~~gGlh~f~~w~g~ilTDSGgfQv~s~g~~~ltpe~~i~~Q~~iGsDI~-~~LD 123 (487)
T PRK13533 45 DELKEFGAEILITNSYIIYRSLREKALEKGLHKLLGFDGPIMTDSGSYQLLVYGDVEVTNEEILEFQRKIGSDIG-VPLD 123 (487)
T ss_pred HHHHHhCCCEEEeeHHHHHhhhhHHHHhCCHHHHhCCCCCeEeccCCcEEEEcCCccCCHHHHHHHHHHhCCCEE-eECC
Confidence 344688988888643111 133333221 1 3467999987665544 344555567898865 4567
Q ss_pred CCCCCchhHHhhhhcCCCCccccccccccccCccccccchhhHHHhhhccCccccHH-HHHhhc--CCCEEEEec---CC
Q 017718 159 TPRLGRREADIKNRFTLPPFLTLKNFQGLDLGKMDEANDSGLAAYVAGQIDRSLSWK-WLQTIT--KLPILVKGV---LT 232 (367)
Q Consensus 159 ~p~~g~r~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~-~l~~~~--~~Pv~vK~v---~~ 232 (367)
-|++..-.+ +......+.+..|. ..++.. .-..++..+ ..
T Consensus 124 ~~t~~~~~~----------------------------------~~~~~sv~rT~rwa~~~~~~~~~~~~~l~giVQGg~~ 169 (487)
T PRK13533 124 IPTPPDVDY----------------------------------EEAEEELEETLERLEEAAELIQDGDMLWVAPVQGGTY 169 (487)
T ss_pred ccCCCCCCH----------------------------------HHHHHHHHHHHHHHHHHHHhhhccCccEEEEecCCCC
Confidence 554211000 00111113344564 222211 112333333 22
Q ss_pred ----HHHHHHHHHcCCcEEEEcCCC-CCCCCCccchHHHHHHHHHHhcCCCcEEEecCCCCHHHHHHHHHcCCCEEEech
Q 017718 233 ----AEDARIAVQAGAAGIIVSNHG-ARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFIGR 307 (367)
Q Consensus 233 ----~~~a~~~~~~G~d~i~vs~~g-g~~~~~~~~~~~~l~~i~~~~~~~~~via~GGI~~~~dv~kal~lGAd~V~ig~ 307 (367)
.+.|+.+.+.|.|++.+.|-. |..-.....-.+.|..+...++.+.|+..-| +.++.++..+.++|+|.+=...
T Consensus 170 ~dLR~~sa~~l~~~~f~gyaIGgl~~~~e~y~~~~~~~ii~~~~~~Lp~dkPryL~G-vG~P~~i~~~V~lGvDlFD~v~ 248 (487)
T PRK13533 170 PDLREESAREASKLGFDVYPIGAVVPLMERYRYDDLVDVVLAAKRGLGPGAPVHLFG-AGHPMMFALAVALGCDLFDSAA 248 (487)
T ss_pred HHHHHHHHHHHHhCCCCEEEEcCcccccccCCHHHHHHHHHHHHhhCCCCCceEEeC-CCCHHHHHHHHHhCCCceeccH
Confidence 255888999999999984411 1000011223566777777776678888866 7899999999999999876666
Q ss_pred HHHHH
Q 017718 308 PVVYS 312 (367)
Q Consensus 308 ~~l~~ 312 (367)
|..++
T Consensus 249 ptr~A 253 (487)
T PRK13533 249 YALYA 253 (487)
T ss_pred HHHHH
Confidence 66654
|
|
| >PRK02227 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=85.27 E-value=4.4 Score=37.85 Aligned_cols=76 Identities=30% Similarity=0.249 Sum_probs=52.4
Q ss_pred cCCHHHHHHHHHcCCcEEEEcCCCCCCCCCccchHHHHHHHHHHhcCCCcEEE-ecCCC-CHHHHH----HHHHcCCCEE
Q 017718 230 VLTAEDARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFL-DGGVR-RGTDVF----KALALGASGI 303 (367)
Q Consensus 230 v~~~~~a~~~~~~G~d~i~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~~~via-~GGI~-~~~dv~----kal~lGAd~V 303 (367)
+.+.++|..+.++|+|.|.+=|-.. -.-|-.....+++|++.++++.||-+ .|++- .+..+. .+-..|+|.|
T Consensus 7 vr~~eEA~~Al~~GaDiIDvK~P~~--GaLGA~~p~vir~Iv~~~~~~~pvSAtiGD~p~~p~~~~~aa~~~a~~GvDyV 84 (238)
T PRK02227 7 VRNLEEALEALAGGADIIDVKNPKE--GSLGANFPWVIREIVAAVPGRKPVSATIGDVPYKPGTISLAALGAAATGADYV 84 (238)
T ss_pred cCCHHHHHHHHhcCCCEEEccCCCC--CCCCCCCHHHHHHHHHHhCCCCCceeeccCCCCCchHHHHHHHHHHhhCCCEE
Confidence 3678999999999999999976211 01123455678888888877788888 45543 333332 3333699999
Q ss_pred Eech
Q 017718 304 FIGR 307 (367)
Q Consensus 304 ~ig~ 307 (367)
=+|-
T Consensus 85 KvGl 88 (238)
T PRK02227 85 KVGL 88 (238)
T ss_pred EEcC
Confidence 9985
|
|
| >cd00405 PRAI Phosphoribosylanthranilate isomerase (PRAI) catalyzes the fourth step of the tryptophan biosynthesis, the conversion of N-(5'- phosphoribosyl)-anthranilate (PRA) to 1-(o-carboxyphenylamino)- 1-deoxyribulose 5-phosphate (CdRP) | Back alignment and domain information |
|---|
Probab=85.21 E-value=2.1 Score=38.62 Aligned_cols=73 Identities=25% Similarity=0.269 Sum_probs=46.5
Q ss_pred ecCCHHHHHHHHHcCCcEEEEcCCCCCCCCCccchHHHHHHHHHHhcC---CCcEEEecCCCCHHHHHHHH-HcCCCEEE
Q 017718 229 GVLTAEDARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQG---RIPVFLDGGVRRGTDVFKAL-ALGASGIF 304 (367)
Q Consensus 229 ~v~~~~~a~~~~~~G~d~i~vs~~gg~~~~~~~~~~~~l~~i~~~~~~---~~~via~GGI~~~~dv~kal-~lGAd~V~ 304 (367)
++.+.++++.+.++|+|+|-+--... ....-+.+...++.+.++. .++|+.+..+ +++.+.. .+|+|+|+
T Consensus 5 Gi~~~ed~~~a~~~Gvd~ig~i~~~~---s~R~v~~~~a~~l~~~~~~~~~~V~v~vn~~~---~~i~~ia~~~~~d~Vq 78 (203)
T cd00405 5 GITTLEDALAAAEAGADAIGFIFAPK---SPRYVSPEQAREIVAALPPFVKRVGVFVNEDL---EEILEIAEELGLDVVQ 78 (203)
T ss_pred CCCCHHHHHHHHHcCCCEEEEecCCC---CCCCCCHHHHHHHHHhCCCCCcEEEEEeCCCH---HHHHHHHHhcCCCEEE
Confidence 34789999999999999997742111 0111134445556555542 5788887753 4333333 57999999
Q ss_pred ech
Q 017718 305 IGR 307 (367)
Q Consensus 305 ig~ 307 (367)
++.
T Consensus 79 lhg 81 (203)
T cd00405 79 LHG 81 (203)
T ss_pred ECC
Confidence 994
|
Most PRAIs are monomeric, monofunctional and thermolabile, but in some thermophile organisms PRAI is dimeric for reasons of stability and in others it is fused to other components of the tryptophan biosynthesis pathway to form multifunctional enzymes. |
| >COG5564 Predicted TIM-barrel enzyme, possibly a dioxygenase [General function prediction only] | Back alignment and domain information |
|---|
Probab=85.09 E-value=17 Score=33.64 Aligned_cols=78 Identities=22% Similarity=0.257 Sum_probs=47.5
Q ss_pred cCCHHHHHHHHHcCCcEEEEcC---CCCC-CCCCccchHHH---HHHHHHH---hcCC-CcEEEecCCCCHHHHHHHHH-
Q 017718 230 VLTAEDARIAVQAGAAGIIVSN---HGAR-QLDYVPATIMA---LEEVVKA---TQGR-IPVFLDGGVRRGTDVFKALA- 297 (367)
Q Consensus 230 v~~~~~a~~~~~~G~d~i~vs~---~gg~-~~~~~~~~~~~---l~~i~~~---~~~~-~~via~GGI~~~~dv~kal~- 297 (367)
|.+.++|+.+.++|+|.|+.+- .||. ....+.+..++ +..+.++ ++.+ +++.--|=|.+++|..--+.
T Consensus 163 V~s~~eAqa~~~aGadiiv~hmg~ttgG~Igar~~~Sl~~~vel~~~~~~aar~v~kd~i~l~~GGPi~~p~da~yi~d~ 242 (276)
T COG5564 163 VFSFEEAQAMTKAGADIIVAHMGLTTGGLIGARSALSLADCVELIELAAEAARGVRKDVIPLCHGGPISMPEDARYILDR 242 (276)
T ss_pred ecCHHHHHHHHHcCcceeeecccccccceeccccccCHHHHHHHHHHHHHHHhhhhhceeeeccCCCcCCchhhHHHHhh
Confidence 5789999999999999988732 2332 11223332222 2222222 2222 56666677999999886665
Q ss_pred -cCCCEEEech
Q 017718 298 -LGASGIFIGR 307 (367)
Q Consensus 298 -lGAd~V~ig~ 307 (367)
-|+|+..=++
T Consensus 243 c~~~~gfygas 253 (276)
T COG5564 243 CPGCDGFYGAS 253 (276)
T ss_pred CCCCCcccccc
Confidence 4888775444
|
|
| >PRK12858 tagatose 1,6-diphosphate aldolase; Reviewed | Back alignment and domain information |
|---|
Probab=84.56 E-value=2.7 Score=41.42 Aligned_cols=73 Identities=22% Similarity=0.222 Sum_probs=44.9
Q ss_pred HHHHHH--cCCcEEEEcCCCCC----CCC------CccchHHHHHHHHHHhcCCCcEEE-ecCCCCHHHHHH----HHHc
Q 017718 236 ARIAVQ--AGAAGIIVSNHGAR----QLD------YVPATIMALEEVVKATQGRIPVFL-DGGVRRGTDVFK----ALAL 298 (367)
Q Consensus 236 a~~~~~--~G~d~i~vs~~gg~----~~~------~~~~~~~~l~~i~~~~~~~~~via-~GGI~~~~dv~k----al~l 298 (367)
++.+.+ .|+|.+-+--.+.- ..+ +.....+.+.++.+.. .+|++. +||+ +.+++.+ ++..
T Consensus 190 ~r~~~~~elGaDvlKve~p~~~~~veg~~~~~~~~~~~~~~~~f~~~~~a~--~~P~vvlsgG~-~~~~f~~~l~~A~~a 266 (340)
T PRK12858 190 MEEFSKPRYGVDVLKVEVPVDMKFVEGFDGFEEAYTQEEAFKLFREQSDAT--DLPFIFLSAGV-SPELFRRTLEFACEA 266 (340)
T ss_pred HHHHhhhccCCeEEEeeCCCCcccccccccccccccHHHHHHHHHHHHhhC--CCCEEEECCCC-CHHHHHHHHHHHHHc
Confidence 566674 99999998432210 011 1111224456665554 677766 7777 6666665 4457
Q ss_pred CC--CEEEechHHHH
Q 017718 299 GA--SGIFIGRPVVY 311 (367)
Q Consensus 299 GA--d~V~ig~~~l~ 311 (367)
|| .+|.+||....
T Consensus 267 Ga~f~Gvl~GRniwq 281 (340)
T PRK12858 267 GADFSGVLCGRATWQ 281 (340)
T ss_pred CCCccchhhhHHHHh
Confidence 99 99999997755
|
|
| >PRK12346 transaldolase A; Provisional | Back alignment and domain information |
|---|
Probab=84.40 E-value=13 Score=36.36 Aligned_cols=90 Identities=14% Similarity=0.120 Sum_probs=62.1
Q ss_pred cCCCEEEEecCCHHHHHHHHHcCCcEEEEcCCCCCCCC-------------CccchHHHHHHHHHHh---cCCCcEEEec
Q 017718 221 TKLPILVKGVLTAEDARIAVQAGAAGIIVSNHGARQLD-------------YVPATIMALEEVVKAT---QGRIPVFLDG 284 (367)
Q Consensus 221 ~~~Pv~vK~v~~~~~a~~~~~~G~d~i~vs~~gg~~~~-------------~~~~~~~~l~~i~~~~---~~~~~via~G 284 (367)
-++++-+-.+.+.+.+..+.++|++.|... =||-.+ .+.+-...+.++.+.. +.+..|++ .
T Consensus 148 ~GI~~n~TliFS~~Qa~~aa~AGa~~ISPf--VgRi~d~~~~~~~~~~~~~~~~~Gv~~v~~i~~~~k~~~~~T~Vm~-A 224 (316)
T PRK12346 148 EGINCNLTLLFSFAQARACAEAGVFLISPF--VGRIYDWYQARKPMDPYVVEEDPGVKSVRNIYDYYKQHRYETIVMG-A 224 (316)
T ss_pred CCCceeEEEecCHHHHHHHHHcCCCEEEec--ccHHHHhhhhccccccccccCCChHHHHHHHHHHHHHcCCCcEEEe-c
Confidence 388998888999999999999999988763 232111 1233444555555443 22444444 5
Q ss_pred CCCCHHHHHHHHHcCCCEEEechHHHHHhhc
Q 017718 285 GVRRGTDVFKALALGASGIFIGRPVVYSLAA 315 (367)
Q Consensus 285 GI~~~~dv~kal~lGAd~V~ig~~~l~~l~~ 315 (367)
.+|+..++. ...|+|.+-|.-.++-.+..
T Consensus 225 SfRn~~qi~--alaG~d~lTi~p~ll~~L~~ 253 (316)
T PRK12346 225 SFRRTEQIL--ALAGCDRLTISPNLLKELQE 253 (316)
T ss_pred ccCCHHHHH--HHhCCCEEeCCHHHHHHHHh
Confidence 599999998 34699999999888776543
|
|
| >COG4981 Enoyl reductase domain of yeast-type FAS1 [Lipid metabolism] | Back alignment and domain information |
|---|
Probab=84.11 E-value=56 Score=34.26 Aligned_cols=37 Identities=24% Similarity=0.465 Sum_probs=30.6
Q ss_pred CCCcEEEecCCCCHHHHHHHHH------cC-----CCEEEechHHHHH
Q 017718 276 GRIPVFLDGGVRRGTDVFKALA------LG-----ASGIFIGRPVVYS 312 (367)
Q Consensus 276 ~~~~via~GGI~~~~dv~kal~------lG-----Ad~V~ig~~~l~~ 312 (367)
+++.+|+-|||.+++|...+|. .| -|++.+|+..|..
T Consensus 212 ~NIvl~vGgGiGtp~~aa~YLTGeWSt~~g~P~MP~DGiLvGtaaMat 259 (717)
T COG4981 212 DNIVLCVGGGIGTPDDAAPYLTGEWSTAYGFPPMPFDGILVGTAAMAT 259 (717)
T ss_pred CCEEEEecCCcCChhhcccccccchhhhcCCCCCCcceeEechhHHhh
Confidence 4799999999999999998773 33 4899999988753
|
|
| >COG0434 SgcQ Predicted TIM-barrel enzyme [General function prediction only] | Back alignment and domain information |
|---|
Probab=83.97 E-value=4.6 Score=37.72 Aligned_cols=73 Identities=29% Similarity=0.369 Sum_probs=42.6
Q ss_pred HHHHHHHHHcCCcEEEEcCCCCCCC--CCccchHHHHHHHHHHhcC--CCcEEEecCCCCHHHHH--HHHHcCCCEEEec
Q 017718 233 AEDARIAVQAGAAGIIVSNHGARQL--DYVPATIMALEEVVKATQG--RIPVFLDGGVRRGTDVF--KALALGASGIFIG 306 (367)
Q Consensus 233 ~~~a~~~~~~G~d~i~vs~~gg~~~--~~~~~~~~~l~~i~~~~~~--~~~via~GGI~~~~dv~--kal~lGAd~V~ig 306 (367)
..||.++++.|+|+|++.|+|-.-+ +-++.+..+...+.+.+.. .+||=.+= ++|..-.. -|.+.||+++=+-
T Consensus 37 ~~dA~~leegG~DavivEN~gD~Pf~k~v~~~tvaaMa~iv~~v~r~v~iPvGvNV-LrNd~vaA~~IA~a~gA~FIRVN 115 (263)
T COG0434 37 VRDAAALEEGGVDAVIVENYGDAPFLKDVGPETVAAMAVIVREVVREVSIPVGVNV-LRNDAVAALAIAYAVGADFIRVN 115 (263)
T ss_pred HHHHHHHHhCCCcEEEEeccCCCCCCCCCChHHHHHHHHHHHHHHHhccccceeee-eccccHHHHHHHHhcCCCEEEEE
Confidence 3789999999999999999987532 4455555544334333211 45543221 23322222 2334699988643
|
|
| >cd02811 IDI-2_FMN Isopentenyl-diphosphate:dimethylallyl diphosphate isomerase type 2 (IDI-2) FMN-binding domain | Back alignment and domain information |
|---|
Probab=83.85 E-value=13 Score=36.45 Aligned_cols=92 Identities=16% Similarity=0.121 Sum_probs=55.8
Q ss_pred HHHHHhhcC-CCEEEEec------CCHHHHHH-HHHcCCcEEEEcCCCC--CCCCCccchH----HHHHHHHHHhcCCCc
Q 017718 214 WKWLQTITK-LPILVKGV------LTAEDARI-AVQAGAAGIIVSNHGA--RQLDYVPATI----MALEEVVKATQGRIP 279 (367)
Q Consensus 214 ~~~l~~~~~-~Pv~vK~v------~~~~~a~~-~~~~G~d~i~vs~~gg--~~~~~~~~~~----~~l~~i~~~~~~~~~ 279 (367)
++.+|+..+ .|+++-.- .+.+++.. ....++|++.+.-.-. .....+...+ +.|..+++.+ ++|
T Consensus 103 ~~~vr~~~~~~p~~~Nl~~~~~~~~~~~~~~~~i~~~~adalel~l~~~q~~~~~~~~~df~~~~~~i~~l~~~~--~vP 180 (326)
T cd02811 103 FTVVREAPPNGPLIANLGAVQLNGYGVEEARRAVEMIEADALAIHLNPLQEAVQPEGDRDFRGWLERIEELVKAL--SVP 180 (326)
T ss_pred HHHHHHhCCCceEEeecCccccCCCCHHHHHHHHHhcCCCcEEEeCcchHhhcCCCCCcCHHHHHHHHHHHHHhc--CCC
Confidence 346777665 78766443 15565444 4447899998842110 0011222233 4566666665 799
Q ss_pred EEE--ecCCCCHHHHHHHHHcCCCEEEech
Q 017718 280 VFL--DGGVRRGTDVFKALALGASGIFIGR 307 (367)
Q Consensus 280 via--~GGI~~~~dv~kal~lGAd~V~ig~ 307 (367)
|++ .|--.+.+++.+....|+|++.+..
T Consensus 181 VivK~~g~g~s~~~a~~l~~~Gvd~I~vsG 210 (326)
T cd02811 181 VIVKEVGFGISRETAKRLADAGVKAIDVAG 210 (326)
T ss_pred EEEEecCCCCCHHHHHHHHHcCCCEEEECC
Confidence 998 3433667777777779999999854
|
Two types of IDIs have been characterized at present. The long known IDI-1 is only dependent on divalent metals for activity, whereas IDI-2 requires a metal, FMN and NADPH. IDI-2 catalyzes the interconversion of isopentenyl diphosphate (IPP) and dimethylallyl diphosphate (DMAPP) in the mevalonate pathway. |
| >PLN02979 glycolate oxidase | Back alignment and domain information |
|---|
Probab=83.77 E-value=2 Score=42.68 Aligned_cols=43 Identities=26% Similarity=0.465 Sum_probs=36.2
Q ss_pred chHHHHHHHHHHhcCCCcEEEecCCCCHHHHHHHHHcCCCEEEech
Q 017718 262 ATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFIGR 307 (367)
Q Consensus 262 ~~~~~l~~i~~~~~~~~~via~GGI~~~~dv~kal~lGAd~V~ig~ 307 (367)
.+|+-|..+++.. ++|||+ .||.+.+|+.+++.+|+|+|.++.
T Consensus 210 ltW~dl~wlr~~~--~~Pviv-KgV~~~~dA~~a~~~Gvd~I~Vsn 252 (366)
T PLN02979 210 LSWKDVQWLQTIT--KLPILV-KGVLTGEDARIAIQAGAAGIIVSN 252 (366)
T ss_pred CCHHHHHHHHhcc--CCCEEe-ecCCCHHHHHHHHhcCCCEEEECC
Confidence 3667787787755 799888 668999999999999999999875
|
|
| >PF01680 SOR_SNZ: SOR/SNZ family; InterPro: IPR001852 Snz1p is a highly conserved protein involved in growth arrest in Saccharomyces cerevisiae (Baker's yeast) [] | Back alignment and domain information |
|---|
Probab=83.69 E-value=3.9 Score=36.49 Aligned_cols=79 Identities=24% Similarity=0.254 Sum_probs=49.0
Q ss_pred HHHHHhhcCCCEEEEec-CCHHHHHHHHHcCCcEEEEcCCCCCCCCCccchHHHHHHHHHHhcCCCcEEEecCCCCHHHH
Q 017718 214 WKWLQTITKLPILVKGV-LTAEDARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDV 292 (367)
Q Consensus 214 ~~~l~~~~~~Pv~vK~v-~~~~~a~~~~~~G~d~i~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~~~via~GGI~~~~dv 292 (367)
++.+.+.+.+||..|-. .+.-+|+.+...|+|+|.=|-- + .|.. --.-|-++ .-++|.+ .|-++-..+
T Consensus 63 I~eI~~aVsIPVMAK~RIGHfvEAqiLealgVD~IDESEV----L--TpAD--~~~HI~K~-~F~vPFV--cGarnLGEA 131 (208)
T PF01680_consen 63 IKEIMDAVSIPVMAKVRIGHFVEAQILEALGVDYIDESEV----L--TPAD--EENHIDKH-NFKVPFV--CGARNLGEA 131 (208)
T ss_dssp HHHHHHH-SSEEEEEEETT-HHHHHHHHHTT-SEEEEETT----S----S---SS----GG-G-SS-EE--EEESSHHHH
T ss_pred HHHHHHheEeceeeccccceeehhhhHHHhCCceeccccc----c--cccc--ccccccch-hCCCCeE--ecCCCHHHH
Confidence 34777888999999987 5678899999999999987531 1 0111 10112221 1156654 468899999
Q ss_pred HHHHHcCCCEE
Q 017718 293 FKALALGASGI 303 (367)
Q Consensus 293 ~kal~lGAd~V 303 (367)
+.-+.-||..+
T Consensus 132 LRRI~EGAaMI 142 (208)
T PF01680_consen 132 LRRIAEGAAMI 142 (208)
T ss_dssp HHHHHTT-SEE
T ss_pred HhhHHhhhhhh
Confidence 99999999865
|
Sor1 (singlet oxygen resistance) is essential in pyridoxine (vitamin B6) synthesis in Cercospora nicotianae and Aspergillus flavus. Pyridoxine quenches singlet oxygen at a rate comparable to that of vitamins C and E, two of the most highly efficient biological antioxidants, suggesting a previously unknown role for pyridoxine in active oxygen resistance [].; GO: 0042823 pyridoxal phosphate biosynthetic process; PDB: 2ISS_A 1ZNN_B 2ZBT_B 2NV2_I 2NV1_C 4ADS_C 4ADU_B 4ADT_B 3FEM_F 3O07_A .... |
| >TIGR00640 acid_CoA_mut_C methylmalonyl-CoA mutase C-terminal domain | Back alignment and domain information |
|---|
Probab=83.68 E-value=7 Score=33.05 Aligned_cols=76 Identities=26% Similarity=0.255 Sum_probs=47.6
Q ss_pred cCCCEEEEec-CCH-HHHHHHHHcCCcEEEEcCCCCCCCCCccchHHHHHHHHHHhc----CCCcEEEecCCCCHHHHHH
Q 017718 221 TKLPILVKGV-LTA-EDARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQ----GRIPVFLDGGVRRGTDVFK 294 (367)
Q Consensus 221 ~~~Pv~vK~v-~~~-~~a~~~~~~G~d~i~vs~~gg~~~~~~~~~~~~l~~i~~~~~----~~~~via~GGI~~~~dv~k 294 (367)
.+.-|+--++ .++ +.++.+.+.++|.|.+|..-+ .+.+.++++.+.++ .+++|++ ||..-.+|..+
T Consensus 29 ~GfeVi~lg~~~s~e~~v~aa~e~~adii~iSsl~~-------~~~~~~~~~~~~L~~~g~~~i~viv-GG~~~~~~~~~ 100 (132)
T TIGR00640 29 LGFDVDVGPLFQTPEEIARQAVEADVHVVGVSSLAG-------GHLTLVPALRKELDKLGRPDILVVV-GGVIPPQDFDE 100 (132)
T ss_pred CCcEEEECCCCCCHHHHHHHHHHcCCCEEEEcCchh-------hhHHHHHHHHHHHHhcCCCCCEEEE-eCCCChHhHHH
Confidence 3555544444 344 447889999999999986322 12333333333332 2466666 76666788888
Q ss_pred HHHcCCCEEE
Q 017718 295 ALALGASGIF 304 (367)
Q Consensus 295 al~lGAd~V~ 304 (367)
..++|.|.+.
T Consensus 101 l~~~Gvd~~~ 110 (132)
T TIGR00640 101 LKEMGVAEIF 110 (132)
T ss_pred HHHCCCCEEE
Confidence 8899988774
|
Methylmalonyl-CoA mutase (EC 5.4.99.2) catalyzes a reversible isomerization between L-methylmalonyl-CoA and succinyl-CoA. The enzyme uses an adenosylcobalamin cofactor. It may be a homodimer, as in mitochondrion, or a heterodimer with partially homologous beta chain that does not bind the adenosylcobalamin cofactor, as in Propionibacterium freudenreichii. The most similar archaeal sequences are separate chains, such as AF2215 and AF2219 of Archaeoglobus fulgidus, that correspond roughly to the first 500 and last 130 residues, respectively of known methylmalonyl-CoA mutases. This model describes the C-terminal domain subfamily. In a neighbor-joining tree (methylaspartate mutase S chain as the outgroup), AF2219 branches with a coenzyme B12-dependent enzyme known not to be 5.4.99.2. |
| >PRK10558 alpha-dehydro-beta-deoxy-D-glucarate aldolase; Provisional | Back alignment and domain information |
|---|
Probab=83.45 E-value=19 Score=33.96 Aligned_cols=150 Identities=13% Similarity=0.128 Sum_probs=0.0
Q ss_pred HHHHHHHHcCCcEEEEecCCCCCCchhHHhhhhcCCCCccccccccccccCccccccchhhHHHhhhccCccccHH----
Q 017718 140 QLVRRAERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLTLKNFQGLDLGKMDEANDSGLAAYVAGQIDRSLSWK---- 215 (367)
Q Consensus 140 ~~l~ra~~~G~~ai~itvd~p~~g~r~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~---- 215 (367)
..++.+..+|++.++|.+- +..++|+
T Consensus 31 ~~~e~~a~~G~D~v~iD~E--------------------------------------------------Hg~~~~~~~~~ 60 (256)
T PRK10558 31 ITTEVLGLAGFDWLVLDGE--------------------------------------------------HAPNDVSTFIP 60 (256)
T ss_pred HHHHHHHhcCCCEEEEccc--------------------------------------------------cCCCCHHHHHH
Q ss_pred --HHHhhcCCCEEEEec-CCHHHHHHHHHcCCcEEEEcC------------------CCCCCCCC--ccchHHHHHHHHH
Q 017718 216 --WLQTITKLPILVKGV-LTAEDARIAVQAGAAGIIVSN------------------HGARQLDY--VPATIMALEEVVK 272 (367)
Q Consensus 216 --~l~~~~~~Pv~vK~v-~~~~~a~~~~~~G~d~i~vs~------------------~gg~~~~~--~~~~~~~l~~i~~ 272 (367)
...+..+++.+|+.. .++..++++.+.|+++|++-. .|.|.... ....+...++..+
T Consensus 61 ~i~a~~~~g~~~lVRvp~~~~~~i~r~LD~Ga~giivP~v~tae~a~~~v~a~kypP~G~Rg~~~~~~~~~y~~~~~y~~ 140 (256)
T PRK10558 61 QLMALKGSASAPVVRVPTNEPVIIKRLLDIGFYNFLIPFVETAEEARRAVASTRYPPEGIRGVSVSHRANMFGTVPDYFA 140 (256)
T ss_pred HHHHHhhcCCCcEEECCCCCHHHHHHHhCCCCCeeeecCcCCHHHHHHHHHHcCCCCCCcCCCCccccccccCChHHHHH
Q ss_pred HhcCCCcEEE----ecCCCCHHHHHHHHHcCCCEEEech-HHHHHhhccChHHHHHHHHHHHHHHHHHHHHhCCC
Q 017718 273 ATQGRIPVFL----DGGVRRGTDVFKALALGASGIFIGR-PVVYSLAAEGEKGVRRVLEMLREEFELAMALSGCR 342 (367)
Q Consensus 273 ~~~~~~~via----~GGI~~~~dv~kal~lGAd~V~ig~-~~l~~l~~~G~~~v~~~i~~l~~el~~~m~~~G~~ 342 (367)
....++.|++ --|+.+-+++++. -|-|++++|. =+-..+...+... ..-+...+.++.......|..
T Consensus 141 ~an~~~~vi~~IEt~~av~ni~eI~av--~gvd~l~iG~~DLs~slG~~~~~~-~~~v~~a~~~v~~aa~~~G~~ 212 (256)
T PRK10558 141 QSNKNITVLVQIESQQGVDNVDAIAAT--EGVDGIFVGPSDLAAALGHLGNAS-HPDVQKAIQHIFARAKAHGKP 212 (256)
T ss_pred HhccccEEEEEECCHHHHHHHHHHhCC--CCCcEEEECHHHHHHHcCCCCCCC-CHHHHHHHHHHHHHHHHcCCc
|
|
| >PRK05437 isopentenyl pyrophosphate isomerase; Provisional | Back alignment and domain information |
|---|
Probab=83.33 E-value=10 Score=37.58 Aligned_cols=93 Identities=13% Similarity=0.097 Sum_probs=58.4
Q ss_pred cHHHHHhhc-CCCEEEEec------CCHHH-HHHHHHcCCcEEEEcCCCCCC--CCCccchH----HHHHHHHHHhcCCC
Q 017718 213 SWKWLQTIT-KLPILVKGV------LTAED-ARIAVQAGAAGIIVSNHGARQ--LDYVPATI----MALEEVVKATQGRI 278 (367)
Q Consensus 213 ~~~~l~~~~-~~Pv~vK~v------~~~~~-a~~~~~~G~d~i~vs~~gg~~--~~~~~~~~----~~l~~i~~~~~~~~ 278 (367)
++..+|+.. +.|+++=.- .+.+. .+.....++|++.+.-.-... ...+...+ +.|.++++.+ ++
T Consensus 110 ~~~~vr~~~p~~p~~aNl~~~~~~~~~~~~~~~~~~~~~adal~l~l~~~qe~~~p~g~~~f~~~le~i~~i~~~~--~v 187 (352)
T PRK05437 110 SFSVVRKVAPDGLLFANLGAVQLYGYGVEEAQRAVEMIEADALQIHLNPLQELVQPEGDRDFRGWLDNIAEIVSAL--PV 187 (352)
T ss_pred HHHHHHHHCCCceEEeecCccccCCCCHHHHHHHHHhcCCCcEEEeCccchhhcCCCCcccHHHHHHHHHHHHHhh--CC
Confidence 345778776 788877432 22444 445566789999984211111 11222233 4566666665 79
Q ss_pred cEEE--ecCCCCHHHHHHHHHcCCCEEEech
Q 017718 279 PVFL--DGGVRRGTDVFKALALGASGIFIGR 307 (367)
Q Consensus 279 ~via--~GGI~~~~dv~kal~lGAd~V~ig~ 307 (367)
||++ .|.-.+.+++.++..+|+|++.++.
T Consensus 188 PVivK~~g~g~s~~~a~~l~~~Gvd~I~Vsg 218 (352)
T PRK05437 188 PVIVKEVGFGISKETAKRLADAGVKAIDVAG 218 (352)
T ss_pred CEEEEeCCCCCcHHHHHHHHHcCCCEEEECC
Confidence 9998 5555677777777789999999854
|
|
| >TIGR00449 tgt_general tRNA-guanine transglycosylases, various specificities | Back alignment and domain information |
|---|
Probab=83.24 E-value=24 Score=35.26 Aligned_cols=73 Identities=18% Similarity=0.147 Sum_probs=49.9
Q ss_pred HHHHHHHHcCCcEEEEcCCCCCCC-CCccchHHHHHHHHHHhcCCCcEEEecCCCCHHHHHHHHHcCCCEEEechHHH
Q 017718 234 EDARIAVQAGAAGIIVSNHGARQL-DYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFIGRPVV 310 (367)
Q Consensus 234 ~~a~~~~~~G~d~i~vs~~gg~~~-~~~~~~~~~l~~i~~~~~~~~~via~GGI~~~~dv~kal~lGAd~V~ig~~~l 310 (367)
+.++.+.+.+.|+..+.|- .+ +......+.+..+...++.+.|...-| +.++.|++.+.++|.|.+=...|..
T Consensus 194 ~sa~~l~~~~~~GyaIGGl---~~ge~~~~~~~~l~~~~~~lP~~kPryl~G-vg~P~~i~~~v~~GvD~FD~~~ptr 267 (367)
T TIGR00449 194 QSAEGLAELDFDGYAIGGV---SVGEPKRDMLRILEHVAPLLPKDKPRYLMG-VGTPELLANAVSLGIDMFDCVAPTR 267 (367)
T ss_pred HHHHHHhhCCCCeEEEeCc---ccCCCHHHHHHHHHHHHhhCCcccceEecC-CCCHHHHHHHHHcCCCEEeeCCccc
Confidence 4477788889999998541 11 111223445555556666678888865 8899999999999999765555543
|
Different tRNA-guanine transglycosylases catalyze different tRNA base modifications. Two guanine base substitutions by different enzymes described by the model are involved in generating queuosine at position 34 in bacterial tRNAs and archaeosine at position 15 in archaeal tRNAs. This model is designed for fragment searching, so the superfamily is used loosely. |
| >PRK11840 bifunctional sulfur carrier protein/thiazole synthase protein; Provisional | Back alignment and domain information |
|---|
Probab=83.24 E-value=12 Score=36.61 Aligned_cols=161 Identities=24% Similarity=0.356 Sum_probs=90.9
Q ss_pred ceeEcCeeeccceEeCcccchhccCChhhHHHHHHHHHcCCcee-ec--CCC--------------------------CC
Q 017718 62 NTTVLGFKISMPIMIAPTAMQKMAHPEGEYATARAASAAGTIMT-LS--SWS--------------------------TS 112 (367)
Q Consensus 62 st~i~g~~l~~Pi~iAPm~~~~l~~~~~e~~~a~aa~~~G~~~~-vs--~~~--------------------------~~ 112 (367)
..+|.|++|++.+++.---+. . ...+.++....|.-++ ++ -.. ..
T Consensus 74 ~~~i~~~~~~sRl~~Gtg~y~---s---~~~~~~a~~asg~e~vTva~rr~~~~~~~~~~~~~~~~~~~~~~lpNTag~~ 147 (326)
T PRK11840 74 SWTVAGKTFSSRLLVGTGKYK---D---FEETAAAVEASGAEIVTVAVRRVNVSDPGAPMLTDYIDPKKYTYLPNTAGCY 147 (326)
T ss_pred CeEECCEEEecceeEecCCCC---C---HHHHHHHHHHhCCCEEEEEEEeecCcCCCcchHHHhhhhcCCEECccCCCCC
Confidence 478999999999988652221 1 2345555566665544 11 000 01
Q ss_pred CHHH------HHhhCCCceEEEEeecCCHH----HHHHHHHHHHHc---CCcEEEEecCCCCCCchhHHhhhhcCCCCcc
Q 017718 113 SVEE------VASTGPGIRFFQLYVYKDRN----VVAQLVRRAERA---GFKAIALTVDTPRLGRREADIKNRFTLPPFL 179 (367)
Q Consensus 113 ~~e~------i~~~~~~~~~~QLy~~~d~~----~~~~~l~ra~~~---G~~ai~itvd~p~~g~r~~~~~~~~~~p~~~ 179 (367)
+-+| +++..-+..|+.|-.-.|+. ...+.+++++.. |+..+.+..|.|+.++|-.++.--.-.|-
T Consensus 148 ta~eAv~~a~lare~~~~~~iKlEvi~e~~~llpd~~~~v~aa~~L~~~Gf~v~~yc~~d~~~a~~l~~~g~~avmPl-- 225 (326)
T PRK11840 148 TAEEAVRTLRLAREAGGWDLVKLEVLGDAKTLYPDMVETLKATEILVKEGFQVMVYCSDDPIAAKRLEDAGAVAVMPL-- 225 (326)
T ss_pred CHHHHHHHHHHHHHhcCCCeEEEEEcCCCCCcccCHHHHHHHHHHHHHCCCEEEEEeCCCHHHHHHHHhcCCEEEeec--
Confidence 2222 11111245788875433321 244567777776 99999999999988777666631100120
Q ss_pred ccccccccccCccccccchhhHHHhhhccCccccHHHHHhhcCCCEEEEe-cCCHHHHHHHHHcCCcEEEE
Q 017718 180 TLKNFQGLDLGKMDEANDSGLAAYVAGQIDRSLSWKWLQTITKLPILVKG-VLTAEDARIAVQAGAAGIIV 249 (367)
Q Consensus 180 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~l~~~~~~Pv~vK~-v~~~~~a~~~~~~G~d~i~v 249 (367)
+.+ -+++.+ +. ++ -.++.+.+..++||++-- +.+++|+..+.+.|+|++-+
T Consensus 226 ----------~~p---IGsg~g--v~---~p-~~i~~~~e~~~vpVivdAGIg~~sda~~AmelGadgVL~ 277 (326)
T PRK11840 226 ----------GAP---IGSGLG--IQ---NP-YTIRLIVEGATVPVLVDAGVGTASDAAVAMELGCDGVLM 277 (326)
T ss_pred ----------ccc---ccCCCC--CC---CH-HHHHHHHHcCCCcEEEeCCCCCHHHHHHHHHcCCCEEEE
Confidence 000 011100 00 11 123345555689988764 58899999999999999977
|
|
| >cd03332 LMO_FMN L-Lactate 2-monooxygenase (LMO) FMN-binding domain | Back alignment and domain information |
|---|
Probab=83.23 E-value=2.3 Score=42.63 Aligned_cols=43 Identities=23% Similarity=0.386 Sum_probs=36.6
Q ss_pred chHHHHHHHHHHhcCCCcEEEecCCCCHHHHHHHHHcCCCEEEech
Q 017718 262 ATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFIGR 307 (367)
Q Consensus 262 ~~~~~l~~i~~~~~~~~~via~GGI~~~~dv~kal~lGAd~V~ig~ 307 (367)
.+|+.|.++++.. ++||++- ||.+.+|+.+++.+|+|+|.+..
T Consensus 240 ~tW~~i~~lr~~~--~~pvivK-gV~~~~dA~~a~~~G~d~I~vsn 282 (383)
T cd03332 240 LTWEDLAFLREWT--DLPIVLK-GILHPDDARRAVEAGVDGVVVSN 282 (383)
T ss_pred CCHHHHHHHHHhc--CCCEEEe-cCCCHHHHHHHHHCCCCEEEEcC
Confidence 3678888888766 7898885 79999999999999999999863
|
LMO is a FMN-containing enzyme that catalyzes the conversion of L-lactate and oxygen to acetate, carbon dioxide, and water. LMO is a member of the family of alpha-hydroxy acid oxidases. It is thought to be a homooctamer with two- and four- fold axes in the center of the octamer. |
| >PRK07188 nicotinate phosphoribosyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=83.20 E-value=7 Score=38.77 Aligned_cols=96 Identities=11% Similarity=0.072 Sum_probs=61.1
Q ss_pred cHHHHHhhcCC-CEEEEecC----CHHHHHHHHHc-CCcE--EEEcCCCCCCCCC--------------ccchHHHHHHH
Q 017718 213 SWKWLQTITKL-PILVKGVL----TAEDARIAVQA-GAAG--IIVSNHGARQLDY--------------VPATIMALEEV 270 (367)
Q Consensus 213 ~~~~l~~~~~~-Pv~vK~v~----~~~~a~~~~~~-G~d~--i~vs~~gg~~~~~--------------~~~~~~~l~~i 270 (367)
.|+..++..+- |+++ .+- +.+++..+.++ |.|. |-+..+|. ++|. .--..+.+.++
T Consensus 192 A~~a~~~~~Pe~~~iv-lVD~~~d~~~~al~~a~~~g~~l~gVRlDs~gd-l~DK~~~~~~~~~~~~~~~G~~~~l~~~v 269 (352)
T PRK07188 192 ACKAYHKTFPEDELIA-LVDYNNDVITDSLKVAREFGDKLKGVRVDTSKN-MIDKYFIRHPEVLGTFDPRGVNPELIKAL 269 (352)
T ss_pred HHHHHHHHCCCCCeEE-EEecCcccHHHHHHHHHHhCCCccEEEeCCcch-HhhhhcccccccccccccccccHHHHHHH
Confidence 45566665542 5543 332 56777777777 8776 76654322 2211 00245556666
Q ss_pred HHHh---c-CCCcEEEecCCCCHHHHHHHHHcC--CCEEEechHHHH
Q 017718 271 VKAT---Q-GRIPVFLDGGVRRGTDVFKALALG--ASGIFIGRPVVY 311 (367)
Q Consensus 271 ~~~~---~-~~~~via~GGI~~~~dv~kal~lG--Ad~V~ig~~~l~ 311 (367)
++.+ + .++.|+++||| +...+......| .|..+||+.+.-
T Consensus 270 r~~Ld~~g~~~vkI~aSgGi-ne~~I~~~~~~g~piD~~GVGt~l~~ 315 (352)
T PRK07188 270 RKALDENGGKHVKIIVSSGF-DAKKIREFEAQNVPVDIYGVGSSLLK 315 (352)
T ss_pred HHHHhhCCCCCcEEEEeCCC-CHHHHHHHHHcCCCccEEecCccccc
Confidence 6554 2 36889999999 667788887889 599999997653
|
|
| >TIGR00874 talAB transaldolase | Back alignment and domain information |
|---|
Probab=82.94 E-value=17 Score=35.60 Aligned_cols=89 Identities=12% Similarity=0.126 Sum_probs=62.1
Q ss_pred cCCCEEEEecCCHHHHHHHHHcCCcEEEEcCCCCCCCCC-------------ccchHHHHHHHHHHh---cCCCcEEEec
Q 017718 221 TKLPILVKGVLTAEDARIAVQAGAAGIIVSNHGARQLDY-------------VPATIMALEEVVKAT---QGRIPVFLDG 284 (367)
Q Consensus 221 ~~~Pv~vK~v~~~~~a~~~~~~G~d~i~vs~~gg~~~~~-------------~~~~~~~l~~i~~~~---~~~~~via~G 284 (367)
-++++-+-.+.+.+.+..+.++|++.|...- ||-.|| ..+....+.+|.+.. +.+..|+ ..
T Consensus 147 ~GI~vN~TliFS~~Qa~aaa~AGa~~ISPFV--gRi~dw~~~~~g~~~~~~~~d~Gv~~v~~i~~~~k~~g~~T~Im-~A 223 (317)
T TIGR00874 147 EGIHCNLTLLFSFVQAIACAEAKVTLISPFV--GRILDWYKAATGKKEYSIEEDPGVASVKKIYNYYKKHGYPTEVM-GA 223 (317)
T ss_pred CCCceeeeeecCHHHHHHHHHcCCCEEEeec--chHhHhhhhccCccccccccCchHHHHHHHHHHHHHcCCCcEEE-ee
Confidence 3899999899999999999999999887631 221110 123444555555443 2244444 45
Q ss_pred CCCCHHHHHHHHHcCCCEEEechHHHHHhh
Q 017718 285 GVRRGTDVFKALALGASGIFIGRPVVYSLA 314 (367)
Q Consensus 285 GI~~~~dv~kal~lGAd~V~ig~~~l~~l~ 314 (367)
.+|+..++.+ ..|||.+-|.-.++-.+.
T Consensus 224 SfRn~~qv~~--laG~d~~Ti~p~ll~~L~ 251 (317)
T TIGR00874 224 SFRNKEEILA--LAGCDRLTISPALLDELK 251 (317)
T ss_pred ccCCHHHHHH--HHCCCeEeCCHHHHHHHH
Confidence 6999999997 569999999987776654
|
This family includes the majority of known and predicted transaldolase sequences, including E. coli TalA and TalB. It excluded two other families. The first includes E. coli transaldolase-like protein TalC. The second family includes the putative transaldolases of Helicobacter pylori and Mycobacterium tuberculosis. |
| >PRK11197 lldD L-lactate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=82.73 E-value=2.3 Score=42.57 Aligned_cols=43 Identities=23% Similarity=0.309 Sum_probs=37.1
Q ss_pred chHHHHHHHHHHhcCCCcEEEecCCCCHHHHHHHHHcCCCEEEech
Q 017718 262 ATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFIGR 307 (367)
Q Consensus 262 ~~~~~l~~i~~~~~~~~~via~GGI~~~~dv~kal~lGAd~V~ig~ 307 (367)
.+|+-|.++++.. ++|||+ .||.+.+|+.+++.+|+|+|.++.
T Consensus 232 ltW~di~~lr~~~--~~pviv-KgV~s~~dA~~a~~~Gvd~I~Vs~ 274 (381)
T PRK11197 232 ISWKDLEWIRDFW--DGPMVI-KGILDPEDARDAVRFGADGIVVSN 274 (381)
T ss_pred CCHHHHHHHHHhC--CCCEEE-EecCCHHHHHHHHhCCCCEEEECC
Confidence 4677888888877 789887 679999999999999999998764
|
|
| >PRK13523 NADPH dehydrogenase NamA; Provisional | Back alignment and domain information |
|---|
Probab=82.53 E-value=11 Score=37.12 Aligned_cols=77 Identities=10% Similarity=0.122 Sum_probs=51.2
Q ss_pred CHHHHHHHHHHHHHcCCcEEEEecCCCCCCchhHHhhhhcCCCCccccccccccccCccccccchhhHHHhhhccCcccc
Q 017718 134 DRNVVAQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLTLKNFQGLDLGKMDEANDSGLAAYVAGQIDRSLS 213 (367)
Q Consensus 134 d~~~~~~~l~ra~~~G~~ai~itvd~p~~g~r~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~ 213 (367)
+.+...+++++++++|++.+.|+.+.... +.. .. . ....+.
T Consensus 225 ~~~e~~~i~~~l~~~gvD~i~vs~g~~~~-------------~~~-~~-----------------------~--~~~~~~ 265 (337)
T PRK13523 225 TVQDYVQYAKWMKEQGVDLIDVSSGAVVP-------------ARI-DV-----------------------Y--PGYQVP 265 (337)
T ss_pred CHHHHHHHHHHHHHcCCCEEEeCCCCCCC-------------CCC-CC-----------------------C--ccccHH
Confidence 56777788899999999998887664210 000 00 0 000112
Q ss_pred H-HHHHhhcCCCEEEEec-CCHHHHHHHHHcC-CcEEEE
Q 017718 214 W-KWLQTITKLPILVKGV-LTAEDARIAVQAG-AAGIIV 249 (367)
Q Consensus 214 ~-~~l~~~~~~Pv~vK~v-~~~~~a~~~~~~G-~d~i~v 249 (367)
+ +.+|+.+++||+.-+. .++++++.+++.| +|.|.+
T Consensus 266 ~~~~ik~~~~ipVi~~G~i~~~~~a~~~l~~g~~D~V~~ 304 (337)
T PRK13523 266 FAEHIREHANIATGAVGLITSGAQAEEILQNNRADLIFI 304 (337)
T ss_pred HHHHHHhhcCCcEEEeCCCCCHHHHHHHHHcCCCChHHh
Confidence 2 2788888999887665 5799999999887 898766
|
|
| >PF03060 NMO: Nitronate monooxygenase; InterPro: IPR004136 2-Nitropropane dioxygenase (1 | Back alignment and domain information |
|---|
Probab=82.32 E-value=12 Score=36.67 Aligned_cols=34 Identities=18% Similarity=0.375 Sum_probs=27.0
Q ss_pred HHHhhcCCCEEEEec-CCHHHHHHHHHcCCcEEEE
Q 017718 216 WLQTITKLPILVKGV-LTAEDARIAVQAGAAGIIV 249 (367)
Q Consensus 216 ~l~~~~~~Pv~vK~v-~~~~~a~~~~~~G~d~i~v 249 (367)
.+++..++||+..+- .+.+++..+...|||++.+
T Consensus 184 ~v~~~~~iPViaAGGI~dg~~iaaal~lGA~gV~~ 218 (330)
T PF03060_consen 184 QVRDAVDIPVIAAGGIADGRGIAAALALGADGVQM 218 (330)
T ss_dssp HHHHH-SS-EEEESS--SHHHHHHHHHCT-SEEEE
T ss_pred HHhhhcCCcEEEecCcCCHHHHHHHHHcCCCEeec
Confidence 788888999999885 7888999999999999998
|
13.11.32 from EC) catalyses the oxidation of nitroalkanes into their corresponding carbonyl compounds and nitrite using eithr FAD or FMN as a cofactor []. This entry also includes fatty acid synthase subunit beta (2.3.1.86 from EC), which catalyses the formation of long- chain fatty acids from acetyl-CoA, malonyl-CoA and NADPH. The beta subunit contains domains for: [acyl-carrier protein] acetyltransferase and malonyltransferase, S-acyl fatty acid synthase thioesterase, enoyl-[acyl-carrier protein] reductase, and 3-hydroxypalmitoyl-[acyl-carrier protein] dehydratase. ; GO: 0018580 nitronate monooxygenase activity, 0055114 oxidation-reduction process; PDB: 2Z6I_B 2Z6J_B 3BW2_A 3BW3_A 3BW4_A 2GJL_A 2GJN_A 3BO9_A. |
| >TIGR01036 pyrD_sub2 dihydroorotate dehydrogenase, subfamily 2 | Back alignment and domain information |
|---|
Probab=82.31 E-value=14 Score=36.33 Aligned_cols=102 Identities=21% Similarity=0.220 Sum_probs=60.0
Q ss_pred CceEEEEeecCCHHHHHHHHHHHHHcCCcEEEEecCCCCCCchhHHhhhhcCCCCccccccccccccCccccccchhhHH
Q 017718 123 GIRFFQLYVYKDRNVVAQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLTLKNFQGLDLGKMDEANDSGLAA 202 (367)
Q Consensus 123 ~~~~~QLy~~~d~~~~~~~l~ra~~~G~~ai~itvd~p~~g~r~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~ 202 (367)
.|.|+.|.+.-+.+.+.++++.++++|+++++++=-.+ . + +. +.-| .. .+ ..+.-++.
T Consensus 211 ~Pv~vKLsP~~~~~~i~~ia~~~~~~GadGi~l~NT~~-~--~--~~---~~~~-~~--~~---------~~GGlSG~-- 268 (335)
T TIGR01036 211 VPVLVKIAPDLTESDLEDIADSLVELGIDGVIATNTTV-S--R--SL---VQGP-KN--SD---------ETGGLSGK-- 268 (335)
T ss_pred CceEEEeCCCCCHHHHHHHHHHHHHhCCcEEEEECCCC-c--c--cc---ccCc-cc--cC---------CCCcccCH--
Confidence 57899987666666788899999999999998643221 0 1 00 0000 00 00 00000110
Q ss_pred HhhhccCccccHH-HHHhhc--CCCEE-EEecCCHHHHHHHHHcCCcEEEE
Q 017718 203 YVAGQIDRSLSWK-WLQTIT--KLPIL-VKGVLTAEDARIAVQAGAAGIIV 249 (367)
Q Consensus 203 ~~~~~~d~~~~~~-~l~~~~--~~Pv~-vK~v~~~~~a~~~~~~G~d~i~v 249 (367)
.+. ...+.|- .+++.. ++||+ +.++.+.+||.....+||+.+.+
T Consensus 269 ~i~---p~al~~v~~~~~~~~~~ipiig~GGI~~~~da~e~l~aGA~~Vqv 316 (335)
T TIGR01036 269 PLQ---DKSTEIIRRLYAELQGRLPIIGVGGISSAQDALEKIRAGASLLQI 316 (335)
T ss_pred HHH---HHHHHHHHHHHHHhCCCCCEEEECCCCCHHHHHHHHHcCCcHHHh
Confidence 111 1122332 555555 58988 45579999999999999999877
|
The subfamilies 1 and 2 share extensive homology, particularly toward the C-terminus. This subfamily has a longer N-terminal region. |
| >PRK00311 panB 3-methyl-2-oxobutanoate hydroxymethyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=82.19 E-value=9.4 Score=36.30 Aligned_cols=82 Identities=16% Similarity=0.120 Sum_probs=54.2
Q ss_pred CCCEEEEecCCHHHHHHHHHcCCcEEEEcCCCCC----CCCCccchHHH-H---HHHHHHhcCCC-cEEEecCCC----C
Q 017718 222 KLPILVKGVLTAEDARIAVQAGAAGIIVSNHGAR----QLDYVPATIMA-L---EEVVKATQGRI-PVFLDGGVR----R 288 (367)
Q Consensus 222 ~~Pv~vK~v~~~~~a~~~~~~G~d~i~vs~~gg~----~~~~~~~~~~~-l---~~i~~~~~~~~-~via~GGI~----~ 288 (367)
+-|+++=.+-+.-.|+.+.++|+|.|.++...+. ..|.++-+++- + +.+++.. +. +|++|-+.. +
T Consensus 14 g~~i~~~tayD~~sArl~e~aG~d~i~vGds~~~~~lG~~Dt~~vtl~em~~h~~~V~r~~--~~p~vvaD~pfg~y~~~ 91 (264)
T PRK00311 14 GEKIVMLTAYDYPFAKLFDEAGVDVILVGDSLGMVVLGYDSTLPVTLDDMIYHTKAVARGA--PRALVVADMPFGSYQAS 91 (264)
T ss_pred CCCEEEEeCCCHHHHHHHHHcCCCEEEECHHHHHHHcCCCCCCCcCHHHHHHHHHHHHhcC--CCCcEEEeCCCCCccCC
Confidence 4688888888899999999999999986422111 13444444433 3 3333332 45 488876544 4
Q ss_pred HHH----HHHHHH-cCCCEEEe
Q 017718 289 GTD----VFKALA-LGASGIFI 305 (367)
Q Consensus 289 ~~d----v~kal~-lGAd~V~i 305 (367)
.++ +.+.+. .||++|-|
T Consensus 92 ~~~av~~a~r~~~~aGa~aVki 113 (264)
T PRK00311 92 PEQALRNAGRLMKEAGAHAVKL 113 (264)
T ss_pred HHHHHHHHHHHHHHhCCeEEEE
Confidence 466 467777 89999999
|
|
| >TIGR02320 PEP_mutase phosphoenolpyruvate phosphomutase | Back alignment and domain information |
|---|
Probab=82.04 E-value=6.7 Score=37.73 Aligned_cols=81 Identities=26% Similarity=0.169 Sum_probs=57.4
Q ss_pred CCCEEEEecCCHHHHHHHHHc---------CCcEEEEcCCCCC----CCCCccchH----HHHHHHHHHhcCCCcEEEe-
Q 017718 222 KLPILVKGVLTAEDARIAVQA---------GAAGIIVSNHGAR----QLDYVPATI----MALEEVVKATQGRIPVFLD- 283 (367)
Q Consensus 222 ~~Pv~vK~v~~~~~a~~~~~~---------G~d~i~vs~~gg~----~~~~~~~~~----~~l~~i~~~~~~~~~via~- 283 (367)
+.|+++-++-+.-.|+.+.++ |.++|.+|+++=. ..|.+.-++ +.+..|...+ .+||++|
T Consensus 8 ~~~l~~p~~~D~~SA~~~e~~~~~~~~~~~Gf~ai~~ss~~~a~s~G~pD~~~~~~~e~~~~~~~I~~a~--~~Pv~~D~ 85 (285)
T TIGR02320 8 KPLERLMEAHNGLSALIAEEARVEVGGESLGFDGIWSSSLTDSTSRGVPDIEEASWTQRLDVVEFMFDVT--TKPIILDG 85 (285)
T ss_pred CCCEEEecCcCHHHHHHHHHhhhcccCcCCCcCEEEechHHHHHHCCCCCcCcCCHHHHHHHHHHHHhhc--CCCEEEec
Confidence 457888888888899999999 9999999875411 234443333 2344555544 7999984
Q ss_pred -cCCCCHHHHH----HHHHcCCCEEEe
Q 017718 284 -GGVRRGTDVF----KALALGASGIFI 305 (367)
Q Consensus 284 -GGI~~~~dv~----kal~lGAd~V~i 305 (367)
+| .++..+. +....|+.++.|
T Consensus 86 d~G-g~~~~v~r~V~~l~~aGvaGi~i 111 (285)
T TIGR02320 86 DTG-GNFEHFRRLVRKLERRGVSAVCI 111 (285)
T ss_pred CCC-CCHHHHHHHHHHHHHcCCeEEEE
Confidence 57 6888863 445589999999
|
A closely related enzyme, phosphonopyruvate hydrolase from Variovorax sp. Pal2, is excluded from this model. |
| >PRK13534 7-cyano-7-deazaguanine tRNA-ribosyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=81.99 E-value=21 Score=38.32 Aligned_cols=200 Identities=18% Similarity=0.145 Sum_probs=107.4
Q ss_pred eeeccceEeCcccchhccCChhhHHHHHHHHHcCCceeecCCC----CCCHHHHHhh----------CC---CceEEEEe
Q 017718 68 FKISMPIMIAPTAMQKMAHPEGEYATARAASAAGTIMTLSSWS----TSSVEEVAST----------GP---GIRFFQLY 130 (367)
Q Consensus 68 ~~l~~Pi~iAPm~~~~l~~~~~e~~~a~aa~~~G~~~~vs~~~----~~~~e~i~~~----------~~---~~~~~QLy 130 (367)
-.+.+|.++ |.+ .. ....-..+..++.|+-+++++.- ....+++... .| +...||++
T Consensus 21 g~i~TP~fm-PV~-~~----~vk~~~~~~l~~~g~~~il~NtYhl~~~pg~~~~~~~gGlH~f~~w~g~ilTDSGgfQv~ 94 (639)
T PRK13534 21 KKIETPTIM-PVI-NP----KKQTVDPDEIKKLGFDIVITNSYIIYKTPELREKALEKGIHSLIGFDGPIMTDSGSFQLS 94 (639)
T ss_pred eeeeCCcee-ecc-cc----hhcccCHHHHHHhCCCEEEehhhhhhhCCchhHHHhcCChHHHhCCCCCeEecCCceeee
Confidence 456777665 443 11 11112334456899888886431 1122333321 11 45779999
Q ss_pred ecCCHHHHH-HHHHHHHHcCCcEEEEecCCCCCCchhHHhhhhcCCCCccccccccccccCccccccchhhHHHhhhccC
Q 017718 131 VYKDRNVVA-QLVRRAERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLTLKNFQGLDLGKMDEANDSGLAAYVAGQID 209 (367)
Q Consensus 131 ~~~d~~~~~-~~l~ra~~~G~~ai~itvd~p~~g~r~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d 209 (367)
...+...+- +.++--++.|++.+ +.+|-|.+.. .. .+......+
T Consensus 95 s~g~~~~tpe~~i~~Q~~iGsDI~-~~LD~~t~~~--------------~~--------------------~~~a~~sv~ 139 (639)
T PRK13534 95 VYGDVEVTNREIIEFQEKIGVDIG-TILDIPTPPD--------------VS--------------------REKAEEDLE 139 (639)
T ss_pred ecCccccCHHHHHHHHHHhCCCEE-EECCcCCCCC--------------CC--------------------HHHHHHHHH
Confidence 877655443 34455566898865 4567554200 00 000111113
Q ss_pred ccccHH-HHHhhcCCCEEEEec---CC----HHHHHHHHHcCCcEEEEcCCCCCC-CCCcc---chHHHHHHHHHHhcCC
Q 017718 210 RSLSWK-WLQTITKLPILVKGV---LT----AEDARIAVQAGAAGIIVSNHGARQ-LDYVP---ATIMALEEVVKATQGR 277 (367)
Q Consensus 210 ~~~~~~-~l~~~~~~Pv~vK~v---~~----~~~a~~~~~~G~d~i~vs~~gg~~-~~~~~---~~~~~l~~i~~~~~~~ 277 (367)
.++.|. ...+..+...+...+ .. .+.|+.+.+.|.|++.+.| .. ..... ...+.|..+...++.+
T Consensus 140 rT~~wa~~~~~~~~~~~lfgiVQGg~~~dLR~~sa~~l~~~~f~g~aIGG---~v~~~e~~~~~~lv~~i~~~~~~LP~d 216 (639)
T PRK13534 140 ETLERAKEAIEIKEKLALNGTVQGSTYPDLRQKSAEEMSKMNFDIYPIGA---VVPLMESYRYRDLVDIIINSKMHLPTN 216 (639)
T ss_pred HHHHHHHHHHhhhhcCcEEEeecCCCCHHHHHHHHHHHHhCCCCeEEEcC---cchHHhhhhHHHHHHHHHHHHhhCCCC
Confidence 344553 222222212333333 22 2558888999999998843 21 00000 1223333455666667
Q ss_pred CcEEEecCCCCHHHHHHHHHcCCCEEEechHHHHH
Q 017718 278 IPVFLDGGVRRGTDVFKALALGASGIFIGRPVVYS 312 (367)
Q Consensus 278 ~~via~GGI~~~~dv~kal~lGAd~V~ig~~~l~~ 312 (367)
.|...-| +.++.++..+.++|+|.+=...|..++
T Consensus 217 kPryL~G-vG~P~~i~~~V~lGvD~FD~v~ptr~A 250 (639)
T PRK13534 217 KPVHLFG-AGHPMFFALAVALGCDLFDSAAYALYA 250 (639)
T ss_pred CCeEEeC-CCCHHHHHHHHHhCCCceeccHHHHHH
Confidence 8888866 889999999999999987666666664
|
|
| >TIGR03151 enACPred_II putative enoyl-(acyl-carrier-protein) reductase II | Back alignment and domain information |
|---|
Probab=81.87 E-value=29 Score=33.62 Aligned_cols=35 Identities=14% Similarity=0.326 Sum_probs=29.8
Q ss_pred HHHhhcCCCEEEEe-cCCHHHHHHHHHcCCcEEEEc
Q 017718 216 WLQTITKLPILVKG-VLTAEDARIAVQAGAAGIIVS 250 (367)
Q Consensus 216 ~l~~~~~~Pv~vK~-v~~~~~a~~~~~~G~d~i~vs 250 (367)
.+++.+++||+.-+ +.+.+++..+...|+|++.+.
T Consensus 155 ~v~~~~~iPviaaGGI~~~~~~~~al~~GA~gV~iG 190 (307)
T TIGR03151 155 QVVDAVSIPVIAAGGIADGRGMAAAFALGAEAVQMG 190 (307)
T ss_pred HHHHHhCCCEEEECCCCCHHHHHHHHHcCCCEeecc
Confidence 67777789999887 478899999999999999984
|
This oxidoreductase of the 2-nitropropane dioxygenase family (pfam03060) is commonly found in apparent operons with genes involved in fatty acid biosynthesis. Furthermore, this genomic context generally includes the fabG 3-oxoacyl-[ACP] reductase and lacks the fabI enoyl-[ACP] reductase. |
| >PLN02493 probable peroxisomal (S)-2-hydroxy-acid oxidase | Back alignment and domain information |
|---|
Probab=81.86 E-value=2.6 Score=41.98 Aligned_cols=42 Identities=26% Similarity=0.486 Sum_probs=35.8
Q ss_pred hHHHHHHHHHHhcCCCcEEEecCCCCHHHHHHHHHcCCCEEEech
Q 017718 263 TIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFIGR 307 (367)
Q Consensus 263 ~~~~l~~i~~~~~~~~~via~GGI~~~~dv~kal~lGAd~V~ig~ 307 (367)
+|+-|..+++.. ++|||+ .||.+++|+.+++.+|+|+|.+..
T Consensus 212 tW~di~wlr~~~--~~Piiv-KgV~~~~dA~~a~~~Gvd~I~Vsn 253 (367)
T PLN02493 212 SWKDVQWLQTIT--KLPILV-KGVLTGEDARIAIQAGAAGIIVSN 253 (367)
T ss_pred CHHHHHHHHhcc--CCCEEe-ecCCCHHHHHHHHHcCCCEEEECC
Confidence 667778787765 799888 568999999999999999999875
|
|
| >COG1519 KdtA 3-deoxy-D-manno-octulosonic-acid transferase [Cell envelope biogenesis, outer membrane] | Back alignment and domain information |
|---|
Probab=81.68 E-value=41 Score=34.06 Aligned_cols=82 Identities=22% Similarity=0.290 Sum_probs=50.3
Q ss_pred CEEEEecCCHHHHHHHHHcCCcEEEEcCCCCCCCCCcc--chHHHHHHHHHHhcCCCcEEEecCCCCHHHH--HHH---H
Q 017718 224 PILVKGVLTAEDARIAVQAGAAGIIVSNHGARQLDYVP--ATIMALEEVVKATQGRIPVFLDGGVRRGTDV--FKA---L 296 (367)
Q Consensus 224 Pv~vK~v~~~~~a~~~~~~G~d~i~vs~~gg~~~~~~~--~~~~~l~~i~~~~~~~~~via~GGI~~~~dv--~ka---l 296 (367)
++-.-...+.+|+++....|+.-+.++| .--.|..+ .....+...+..+++.-|+++.++-+.|+|- +++ |
T Consensus 177 ~i~li~aQse~D~~Rf~~LGa~~v~v~G--NlKfd~~~~~~~~~~~~~~r~~l~~~r~v~iaaSTH~GEeei~l~~~~~l 254 (419)
T COG1519 177 NIDLILAQSEEDAQRFRSLGAKPVVVTG--NLKFDIEPPPQLAAELAALRRQLGGHRPVWVAASTHEGEEEIILDAHQAL 254 (419)
T ss_pred hcceeeecCHHHHHHHHhcCCcceEEec--ceeecCCCChhhHHHHHHHHHhcCCCCceEEEecCCCchHHHHHHHHHHH
Confidence 3333345899999999999999977654 32233332 2333455555666543578887888888874 233 3
Q ss_pred H-c--CCCEEEech
Q 017718 297 A-L--GASGIFIGR 307 (367)
Q Consensus 297 ~-l--GAd~V~ig~ 307 (367)
. . ++-.+.+-|
T Consensus 255 ~~~~~~~llIlVPR 268 (419)
T COG1519 255 KKQFPNLLLILVPR 268 (419)
T ss_pred HhhCCCceEEEecC
Confidence 2 2 455666666
|
|
| >PRK05581 ribulose-phosphate 3-epimerase; Validated | Back alignment and domain information |
|---|
Probab=81.54 E-value=40 Score=30.35 Aligned_cols=83 Identities=14% Similarity=-0.003 Sum_probs=48.0
Q ss_pred HHHhhcCCCEE--EEecCCHHHHHHHHHcCCcEEEEcCCCCCCCCCccchHHHHHHHHHHhcCCCcEEEecCCCCHHHHH
Q 017718 216 WLQTITKLPIL--VKGVLTAEDARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVF 293 (367)
Q Consensus 216 ~l~~~~~~Pv~--vK~v~~~~~a~~~~~~G~d~i~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~~~via~GGI~~~~dv~ 293 (367)
++++..+.|+. ++.-...+....+.++|+|++.+ |++.. ......++.+++ . .+.+..+-+-.+..+..
T Consensus 55 ~i~~~~~~~~~v~l~v~d~~~~i~~~~~~g~d~v~v--h~~~~----~~~~~~~~~~~~-~--~~~~g~~~~~~t~~e~~ 125 (220)
T PRK05581 55 AIRKVTKLPLDVHLMVENPDRYVPDFAKAGADIITF--HVEAS----EHIHRLLQLIKS-A--GIKAGLVLNPATPLEPL 125 (220)
T ss_pred HHHhcCCCcEEEEeeeCCHHHHHHHHHHcCCCEEEE--eeccc----hhHHHHHHHHHH-c--CCEEEEEECCCCCHHHH
Confidence 55554443432 22222234567778999999999 55421 112233433332 2 44444444556778888
Q ss_pred HHHHcCCCEEEech
Q 017718 294 KALALGASGIFIGR 307 (367)
Q Consensus 294 kal~lGAd~V~ig~ 307 (367)
+.+..++|.+.+++
T Consensus 126 ~~~~~~~d~i~~~~ 139 (220)
T PRK05581 126 EDVLDLLDLVLLMS 139 (220)
T ss_pred HHHHhhCCEEEEEE
Confidence 88877899988875
|
|
| >cd04722 TIM_phosphate_binding TIM barrel proteins share a structurally conserved phosphate binding motif and in general share an eight beta/alpha closed barrel structure | Back alignment and domain information |
|---|
Probab=81.43 E-value=5.3 Score=34.56 Aligned_cols=74 Identities=27% Similarity=0.306 Sum_probs=48.6
Q ss_pred HHHHHHHHHcCCcEEEEcCCCCCCCCCccchHHHHHHHHHHhcCCCcEEEecCCCCHHHHH-----HHHHcCCCEEEech
Q 017718 233 AEDARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVF-----KALALGASGIFIGR 307 (367)
Q Consensus 233 ~~~a~~~~~~G~d~i~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~~~via~GGI~~~~dv~-----kal~lGAd~V~ig~ 307 (367)
.++++.+.+.|++.+.+...............+.+..+.+.. .+|+++...+.+..+.. .+..+|+|.|.+.-
T Consensus 15 ~~~~~~~~~~G~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~a~~~~~~g~d~v~l~~ 92 (200)
T cd04722 15 VELAKAAAEAGADAIIVGTRSSDPEEAETDDKEVLKEVAAET--DLPLGVQLAINDAAAAVDIAAAAARAAGADGVEIHG 92 (200)
T ss_pred HHHHHHHHcCCCCEEEEeeEEECcccCCCccccHHHHHHhhc--CCcEEEEEccCCchhhhhHHHHHHHHcCCCEEEEec
Confidence 567888999999999886533221111111113344554444 68999998887777755 56678999999986
Q ss_pred H
Q 017718 308 P 308 (367)
Q Consensus 308 ~ 308 (367)
.
T Consensus 93 ~ 93 (200)
T cd04722 93 A 93 (200)
T ss_pred c
Confidence 3
|
Specific for this family is the conserved phosphate binding site at the edges of strands 7 and 8. The phosphate comes either from the substrate, as in the case of inosine monophosphate dehydrogenase (IMPDH), or from ribulose-5-phosphate 3-epimerase (RPE) or from cofactors, like FMN. |
| >cd04736 MDH_FMN Mandelate dehydrogenase (MDH)-like FMN-binding domain | Back alignment and domain information |
|---|
Probab=81.42 E-value=3.1 Score=41.42 Aligned_cols=41 Identities=17% Similarity=0.313 Sum_probs=35.6
Q ss_pred hHHHHHHHHHHhcCCCcEEEecCCCCHHHHHHHHHcCCCEEEec
Q 017718 263 TIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFIG 306 (367)
Q Consensus 263 ~~~~l~~i~~~~~~~~~via~GGI~~~~dv~kal~lGAd~V~ig 306 (367)
+++.|.++++.. +.|||.- ||.+++|+.+++.+|+|+|.++
T Consensus 224 ~w~~i~~ir~~~--~~pviiK-gV~~~eda~~a~~~G~d~I~VS 264 (361)
T cd04736 224 NWQDLRWLRDLW--PHKLLVK-GIVTAEDAKRCIELGADGVILS 264 (361)
T ss_pred CHHHHHHHHHhC--CCCEEEe-cCCCHHHHHHHHHCCcCEEEEC
Confidence 577888888876 6788887 4999999999999999999876
|
MDH is part of a widespread family of homologous FMN-dependent a-hydroxy acid oxidizing enzymes that oxidizes (S)-mandelate to phenylglyoxalate. MDH is an enzyme in the mandelate pathway that occurs in several strains of Pseudomonas which converts (R)-mandelate to benzoate. This family occurs in both prokaryotes and eukaryotes. Members of this family include flavocytochrome b2 (FCB2), glycolate oxidase (GOX), lactate monooxygenase (LMO), mandelate dehydrogenase (MDH), and long chain hydroxyacid oxidase (LCHAO). |
| >TIGR02319 CPEP_Pphonmut carboxyvinyl-carboxyphosphonate phosphorylmutase | Back alignment and domain information |
|---|
Probab=81.36 E-value=10 Score=36.71 Aligned_cols=67 Identities=16% Similarity=0.161 Sum_probs=46.0
Q ss_pred HHHHHHcCCcEEEEcCCCCCCCCCccchHHHHHHHHHHhcCCCcE---EEecCCCCHHHHHHHHHcCCCEEEechHHHHH
Q 017718 236 ARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPV---FLDGGVRRGTDVFKALALGASGIFIGRPVVYS 312 (367)
Q Consensus 236 a~~~~~~G~d~i~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~~~v---ia~GGI~~~~dv~kal~lGAd~V~ig~~~l~~ 312 (367)
++...++|||.|.+. | +.+.+.+.++.+.+ +.|+ +..||-.-...+...-.+|.+.|..+...+++
T Consensus 171 a~aY~eAGAD~ifi~--~-------~~~~~ei~~~~~~~--~~P~~~nv~~~~~~p~~s~~eL~~lG~~~v~~~~~~~~a 239 (294)
T TIGR02319 171 SREYVAAGADCIFLE--A-------MLDVEEMKRVRDEI--DAPLLANMVEGGKTPWLTTKELESIGYNLAIYPLSGWMA 239 (294)
T ss_pred HHHHHHhCCCEEEec--C-------CCCHHHHHHHHHhc--CCCeeEEEEecCCCCCCCHHHHHHcCCcEEEEcHHHHHH
Confidence 567789999999983 2 34566777777777 3455 34444322234556667899999999877765
Q ss_pred h
Q 017718 313 L 313 (367)
Q Consensus 313 l 313 (367)
.
T Consensus 240 a 240 (294)
T TIGR02319 240 A 240 (294)
T ss_pred H
Confidence 3
|
This family consists of carboxyvinyl-carboxyphosphonate phosphorylmutase (CPEP phosphonomutase), an unusual enzyme involved in the biosynthesis of the antibiotic bialaphos. So far, it is known only in that pathway and only in Streptomyces hygroscopicus. Some related proteins annotated as being functionally equivalent are likely misannotated examples of methylisocitrate lyase, an enzyme of priopionate utilization. |
| >PF04476 DUF556: Protein of unknown function (DUF556); InterPro: IPR007565 The proteins in this entry are functionally uncharacterised | Back alignment and domain information |
|---|
Probab=81.29 E-value=13 Score=34.55 Aligned_cols=76 Identities=28% Similarity=0.278 Sum_probs=51.5
Q ss_pred cCCHHHHHHHHHcCCcEEEEcCCCCCCCCCccchHHHHHHHHHHhcCCCcEEEe-cCCC-CHHHHH----HHHHcCCCEE
Q 017718 230 VLTAEDARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLD-GGVR-RGTDVF----KALALGASGI 303 (367)
Q Consensus 230 v~~~~~a~~~~~~G~d~i~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~~~via~-GGI~-~~~dv~----kal~lGAd~V 303 (367)
+.+.++|..+.+.|+|.|.+=|-....+ |-.....+++|++.++++.||-+. |.+- .+..+. .+...|+|.|
T Consensus 7 v~~~~EA~~a~~~gaDiID~K~P~~GaL--GA~~~~vi~~i~~~~~~~~pvSAtiGDlp~~p~~~~~aa~~~a~~Gvdyv 84 (235)
T PF04476_consen 7 VRNVEEAEEALAGGADIIDLKNPAEGAL--GALFPWVIREIVAAVPGRKPVSATIGDLPMKPGTASLAALGAAATGVDYV 84 (235)
T ss_pred CCCHHHHHHHHhCCCCEEEccCCCCCCC--CCCCHHHHHHHHHHcCCCCceEEEecCCCCCchHHHHHHHHHHhcCCCEE
Confidence 4678999999999999999976321111 223456678888888777888874 4443 233332 2344799999
Q ss_pred Eech
Q 017718 304 FIGR 307 (367)
Q Consensus 304 ~ig~ 307 (367)
=+|-
T Consensus 85 KvGl 88 (235)
T PF04476_consen 85 KVGL 88 (235)
T ss_pred EEec
Confidence 9984
|
|
| >PF01680 SOR_SNZ: SOR/SNZ family; InterPro: IPR001852 Snz1p is a highly conserved protein involved in growth arrest in Saccharomyces cerevisiae (Baker's yeast) [] | Back alignment and domain information |
|---|
Probab=81.27 E-value=14 Score=33.06 Aligned_cols=79 Identities=25% Similarity=0.281 Sum_probs=54.0
Q ss_pred hcCCCEEEEecCCHHHHHHHHHcCCcEEEEcCC--------CCCCCCCccchHHHHHHHHHHhcCCCcEEEecCCCCHHH
Q 017718 220 ITKLPILVKGVLTAEDARIAVQAGAAGIIVSNH--------GARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTD 291 (367)
Q Consensus 220 ~~~~Pv~vK~v~~~~~a~~~~~~G~d~i~vs~~--------gg~~~~~~~~~~~~l~~i~~~~~~~~~via~GGI~~~~d 291 (367)
..+.-||+ .+.++|.|+.+.++|+=++.+.-. ||- ...+....+.+|.+++ .+||++--.|..-..
T Consensus 12 mlkGGVIM-DV~n~eQAkIAE~AGA~AVMaLervPadiR~~GGV---aRMsDP~~I~eI~~aV--sIPVMAK~RIGHfvE 85 (208)
T PF01680_consen 12 MLKGGVIM-DVTNAEQAKIAEEAGAVAVMALERVPADIRAAGGV---ARMSDPKMIKEIMDAV--SIPVMAKVRIGHFVE 85 (208)
T ss_dssp TTTTEEEE-EESSHHHHHHHHHHT-SEEEE-SS-HHHHHHTTS------S--HHHHHHHHHH---SSEEEEEEETT-HHH
T ss_pred HhcCCeEE-EecCHHHHHHHHHhCCeEEEEeccCCHhHHhcCCc---cccCCHHHHHHHHHhe--Eeceeeccccceeeh
Confidence 34455655 578999999999999999887431 221 1245677899999988 899999999988877
Q ss_pred HHHHHHcCCCEEE
Q 017718 292 VFKALALGASGIF 304 (367)
Q Consensus 292 v~kal~lGAd~V~ 304 (367)
+.-.-++|.|.+=
T Consensus 86 AqiLealgVD~ID 98 (208)
T PF01680_consen 86 AQILEALGVDYID 98 (208)
T ss_dssp HHHHHHTT-SEEE
T ss_pred hhhHHHhCCceec
Confidence 7666678999763
|
Sor1 (singlet oxygen resistance) is essential in pyridoxine (vitamin B6) synthesis in Cercospora nicotianae and Aspergillus flavus. Pyridoxine quenches singlet oxygen at a rate comparable to that of vitamins C and E, two of the most highly efficient biological antioxidants, suggesting a previously unknown role for pyridoxine in active oxygen resistance [].; GO: 0042823 pyridoxal phosphate biosynthetic process; PDB: 2ISS_A 1ZNN_B 2ZBT_B 2NV2_I 2NV1_C 4ADS_C 4ADU_B 4ADT_B 3FEM_F 3O07_A .... |
| >PRK12595 bifunctional 3-deoxy-7-phosphoheptulonate synthase/chorismate mutase; Reviewed | Back alignment and domain information |
|---|
Probab=80.83 E-value=38 Score=33.70 Aligned_cols=156 Identities=17% Similarity=0.180 Sum_probs=73.4
Q ss_pred cccchhccCChhhHHHHHHHHHcCCceeecCCCCCCHHHHHhhCCCceEEEEeecCCHHHHHHHHHHHHHcCCcEEEEec
Q 017718 78 PTAMQKMAHPEGEYATARAASAAGTIMTLSSWSTSSVEEVASTGPGIRFFQLYVYKDRNVVAQLVRRAERAGFKAIALTV 157 (367)
Q Consensus 78 Pm~~~~l~~~~~e~~~a~aa~~~G~~~~vs~~~~~~~e~i~~~~~~~~~~QLy~~~d~~~~~~~l~ra~~~G~~ai~itv 157 (367)
|-++.++.. ++-..+.+.|.++|++++.+-+.....+.+.+.. -++|+-.. + -...++++.+.+.|-..+ +.-
T Consensus 160 p~~f~g~~~-e~l~~L~~~~~~~Gl~~~t~v~d~~~~~~l~~~v---d~lkI~s~-~-~~n~~LL~~~a~~gkPVi-lk~ 232 (360)
T PRK12595 160 PYDFQGLGV-EGLKILKQVADEYGLAVISEIVNPADVEVALDYV---DVIQIGAR-N-MQNFELLKAAGRVNKPVL-LKR 232 (360)
T ss_pred CccccCCCH-HHHHHHHHHHHHcCCCEEEeeCCHHHHHHHHHhC---CeEEECcc-c-ccCHHHHHHHHccCCcEE-EeC
Confidence 334444332 4556899999999999887666655666555442 25555321 1 111345555555544322 222
Q ss_pred CCCCCCchhHHhhhhcCCCCccccccccccccCccccccchhhHHHhhhccCccccHH---HHHhhcCCCEEEEec--CC
Q 017718 158 DTPRLGRREADIKNRFTLPPFLTLKNFQGLDLGKMDEANDSGLAAYVAGQIDRSLSWK---WLQTITKLPILVKGV--LT 232 (367)
Q Consensus 158 d~p~~g~r~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~---~l~~~~~~Pv~vK~v--~~ 232 (367)
+. . --..|+..... .+...+-..+. +.+ ++ ...+- .....+++|. .+++.+++||++=-. ..
T Consensus 233 G~--~-~t~~e~~~Ave---~i~~~Gn~~i~---L~e-rg--~s~yp-~~~~~~ldl~~i~~lk~~~~~PV~~d~~Hs~G 299 (360)
T PRK12595 233 GL--S-ATIEEFIYAAE---YIMSQGNGQII---LCE-RG--IRTYE-KATRNTLDISAVPILKQETHLPVMVDVTHSTG 299 (360)
T ss_pred CC--C-CCHHHHHHHHH---HHHHCCCCCEE---EEC-Cc--cCCCC-CCCCCCcCHHHHHHHHHHhCCCEEEeCCCCCc
Confidence 21 0 01112221110 00000000000 000 00 00000 0001234554 788888999987222 11
Q ss_pred -----HHHHHHHHHcCCcEEEEcCCC
Q 017718 233 -----AEDARIAVQAGAAGIIVSNHG 253 (367)
Q Consensus 233 -----~~~a~~~~~~G~d~i~vs~~g 253 (367)
+..+..+..+||||+++--|-
T Consensus 300 ~r~~~~~~a~aAva~GAdg~~iE~H~ 325 (360)
T PRK12595 300 RRDLLLPTAKAALAIGADGVMAEVHP 325 (360)
T ss_pred chhhHHHHHHHHHHcCCCeEEEEecC
Confidence 235778899999999986665
|
|
| >cd00564 TMP_TenI Thiamine monophosphate synthase (TMP synthase)/TenI | Back alignment and domain information |
|---|
Probab=80.71 E-value=37 Score=29.49 Aligned_cols=35 Identities=29% Similarity=0.502 Sum_probs=29.8
Q ss_pred HHHhhcCCCEEEEecCCHHHHHHHHHcCCcEEEEc
Q 017718 216 WLQTITKLPILVKGVLTAEDARIAVQAGAAGIIVS 250 (367)
Q Consensus 216 ~l~~~~~~Pv~vK~v~~~~~a~~~~~~G~d~i~vs 250 (367)
++++..++||++-+..+.+.+..+.++|+|++.+.
T Consensus 144 ~~~~~~~~pv~a~GGi~~~~i~~~~~~Ga~~i~~g 178 (196)
T cd00564 144 EIAELVEIPVVAIGGITPENAAEVLAAGADGVAVI 178 (196)
T ss_pred HHHHhCCCCEEEECCCCHHHHHHHHHcCCCEEEEe
Confidence 55555689999988888899999999999999884
|
TMP synthase catalyzes an important step in the thiamine biosynthesis pathway, the substitution of the pyrophosphate of 2-methyl-4-amino-5- hydroxymethylpyrimidine pyrophosphate by 4-methyl-5- (beta-hydroxyethyl) thiazole phosphate to yield thiamine phosphate. TenI is a enzymatically inactive regulatory protein involved in the regulation of several extracellular enzymes. This superfamily also contains other enzymatically inactive proteins with unknown functions. |
| >COG0191 Fba Fructose/tagatose bisphosphate aldolase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=80.65 E-value=56 Score=31.44 Aligned_cols=110 Identities=21% Similarity=0.316 Sum_probs=72.1
Q ss_pred CCHHHHHHHHHc-CCcEEEEcC---CCCCCCCCccchHHHHHHHHHHhcCCCcEEEecCCC-CHHHHHHHHHcCCCEEEe
Q 017718 231 LTAEDARIAVQA-GAAGIIVSN---HGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVR-RGTDVFKALALGASGIFI 305 (367)
Q Consensus 231 ~~~~~a~~~~~~-G~d~i~vs~---~gg~~~~~~~~~~~~l~~i~~~~~~~~~via~GGI~-~~~dv~kal~lGAd~V~i 305 (367)
.++++|+...+. |+|.+-++- ||-+....-.-.++.|.++.+.+ ++|+..=||=. .-+++.|++.+|-.-|=|
T Consensus 156 tdp~ea~~fv~~tgiD~LA~aiGn~HG~Yk~~~p~L~~~~L~~i~~~~--~~PlVlHGgSGip~~eI~~aI~~GV~KvNi 233 (286)
T COG0191 156 TDPEEALEFVERTGIDALAAAIGNVHGVYKPGNPKLDFDRLKEIQEAV--SLPLVLHGGSGIPDEEIREAIKLGVAKVNI 233 (286)
T ss_pred CCHHHHHHHHhccCcceeeeeccccccCCCCCCCCCCHHHHHHHHHHh--CCCEEEeCCCCCCHHHHHHHHHhCceEEee
Confidence 356777666555 699998752 56543311223678899999888 59988877543 347899999999999999
Q ss_pred chHHHHHhhc-------cC-----h-HHHHHHHHHHHHHHHHHHHHhCCC
Q 017718 306 GRPVVYSLAA-------EG-----E-KGVRRVLEMLREEFELAMALSGCR 342 (367)
Q Consensus 306 g~~~l~~l~~-------~G-----~-~~v~~~i~~l~~el~~~m~~~G~~ 342 (367)
.|-+-++... +. + .-+....+.+++-++.-|..+|+.
T Consensus 234 ~Td~~~A~~~avr~~~~~~~k~~DpR~~l~~a~~am~~~v~~~~~~fgs~ 283 (286)
T COG0191 234 DTDLQLAFTAAVREYLAENPKEYDPRKYLKPAIEAMKEVVKEKIKEFGSA 283 (286)
T ss_pred CcHHHHHHHHHHHHHHHhCcccCCHHHHHHHHHHHHHHHHHHHHHHhCcc
Confidence 9976554321 01 1 123334456666666777777764
|
|
| >TIGR01520 FruBisAldo_II_A fructose-bisphosphate aldolase, class II, yeast/E | Back alignment and domain information |
|---|
Probab=80.61 E-value=24 Score=35.07 Aligned_cols=82 Identities=20% Similarity=0.211 Sum_probs=56.8
Q ss_pred CCHHHHHHHHH-c----CCcEEEEcC---CCCCCCCCccchHHHHHHHHHHhc--CCCc------EEEecCCCCH-HHHH
Q 017718 231 LTAEDARIAVQ-A----GAAGIIVSN---HGARQLDYVPATIMALEEVVKATQ--GRIP------VFLDGGVRRG-TDVF 293 (367)
Q Consensus 231 ~~~~~a~~~~~-~----G~d~i~vs~---~gg~~~~~~~~~~~~l~~i~~~~~--~~~~------via~GGI~~~-~dv~ 293 (367)
.++++|+...+ . |+|.+.++- ||-+....-.-.++.|.+|.+.+. .++| +..=||=..+ +++.
T Consensus 195 TdPeeA~~Fv~~t~~~TgvD~LAvAiGT~HG~Yk~~~p~Ld~d~L~~I~~~~~~~~~vP~~~~~pLVLHGgSGi~~e~i~ 274 (357)
T TIGR01520 195 TQPEDVYYAYEELSKISPNFSIAAAFGNVHGVYKPGNVKLTPDILADGQEYVSEKLGLPAAKPLFFVFHGGSGSTKQEIK 274 (357)
T ss_pred CCHHHHHHHHHHhccCCCcceeeeeeccccCCcCCCCCccCHHHHHHHHHHHHHhcCCCcCCCCcEEEeCCCCCCHHHHH
Confidence 57888887765 3 899998863 564321111236788999954321 1566 8887765555 8899
Q ss_pred HHHHcCCCEEEechHHHHH
Q 017718 294 KALALGASGIFIGRPVVYS 312 (367)
Q Consensus 294 kal~lGAd~V~ig~~~l~~ 312 (367)
|++.+|-.-|=++|-+.++
T Consensus 275 kai~~GI~KINi~Tdl~~A 293 (357)
T TIGR01520 275 EALSYGVVKMNIDTDTQWA 293 (357)
T ss_pred HHHHCCCeEEEeCcHHHHH
Confidence 9999999999999987664
|
coli subtype. This model represents one of two deeply split, architecturally distinct clades of the family that includes class II fructose-bisphosphate aldolases, tagatose-bisphosphate aldolases, and related uncharacterized proteins. This family is well-conserved and includes characterized FBA from Saccharomyces cerevisiae, Escherichia coli, and Corynebacterium glutamicum. Proteins outside the scope of this model may also be designated as class II fructose-bisphosphate aldolases, but are well separated in an alignment-based phylogenetic tree. |
| >TIGR01361 DAHP_synth_Bsub phospho-2-dehydro-3-deoxyheptonate aldolase | Back alignment and domain information |
|---|
Probab=80.57 E-value=27 Score=33.03 Aligned_cols=37 Identities=35% Similarity=0.516 Sum_probs=26.9
Q ss_pred HHHhhcCCCEEE-Ee-cCC-----HHHHHHHHHcCCcEEEEcCC
Q 017718 216 WLQTITKLPILV-KG-VLT-----AEDARIAVQAGAAGIIVSNH 252 (367)
Q Consensus 216 ~l~~~~~~Pv~v-K~-v~~-----~~~a~~~~~~G~d~i~vs~~ 252 (367)
.+|+.++.||++ -. ... ...+..+...|+++|++--|
T Consensus 188 ~lk~~~~~pV~~ds~Hs~G~r~~~~~~~~aAva~Ga~gl~iE~H 231 (260)
T TIGR01361 188 VLKKETHLPIIVDPSHAAGRRDLVIPLAKAAIAAGADGLMIEVH 231 (260)
T ss_pred HHHHhhCCCEEEcCCCCCCccchHHHHHHHHHHcCCCEEEEEeC
Confidence 777778899987 22 122 56688899999999887555
|
The member of this family from Synechocystis PCC 6803, CcmA, was shown to be essential for carboxysome formation. However, no other candidate for this enzyme is present in that species, chorismate biosynthesis does occur, other species having this protein lack carboxysomes but appear to make chorismate, and a requirement of CcmA for carboxysome formation does not prohibit a role in chorismate biosynthesis. |
| >PF09370 TIM-br_sig_trns: TIM-barrel signal transduction protein; InterPro: IPR009215 Members of this family are predicted to have a TIM barrel fold, based on PSI-BLAST analysis (iteration 4) and on SCOP prediction (using SMART) | Back alignment and domain information |
|---|
Probab=80.52 E-value=4.7 Score=38.23 Aligned_cols=83 Identities=25% Similarity=0.268 Sum_probs=47.1
Q ss_pred CCCEEEEecCCHHHHHHHHHcCCcEEEEcCCCCCCCCC----------ccc---hHHHHHHHHHHhcCCCcEEEecC---
Q 017718 222 KLPILVKGVLTAEDARIAVQAGAAGIIVSNHGARQLDY----------VPA---TIMALEEVVKATQGRIPVFLDGG--- 285 (367)
Q Consensus 222 ~~Pv~vK~v~~~~~a~~~~~~G~d~i~vs~~gg~~~~~----------~~~---~~~~l~~i~~~~~~~~~via~GG--- 285 (367)
+.||+--+..+.-.|+.+.+.|+|.|++-|.|.....+ +-+ ..+.-.++...+ .+.||++-=.
T Consensus 14 ~~pIig~gaGtGlsAk~ae~gGaDlI~~ynsGrfR~~G~~SlagllpygnaN~iv~em~~eiLp~v-~~tPViaGv~atD 92 (268)
T PF09370_consen 14 GKPIIGAGAGTGLSAKCAEKGGADLILIYNSGRFRMAGRGSLAGLLPYGNANEIVMEMAREILPVV-KDTPVIAGVCATD 92 (268)
T ss_dssp T--EEEEEESSHHHHHHHHHTT-SEEEE-HHHHHHHTT--GGGGGBTEEEHHHHHHHHHHHHGGG--SSS-EEEEE-TT-
T ss_pred CCceEEEeeccchhhHHHHhcCCCEEEEecchhHhhCCCcchhhhhcccCHhHHHHHHHHhhhhhc-cCCCEEEEecCcC
Confidence 58999888899999999999999999998865432211 111 223334444333 3699998322
Q ss_pred -CCCHHHHHHHHH-cCCCEEEe
Q 017718 286 -VRRGTDVFKALA-LGASGIFI 305 (367)
Q Consensus 286 -I~~~~dv~kal~-lGAd~V~i 305 (367)
.++-...++-|. +|..+|+=
T Consensus 93 P~~~~~~fl~~lk~~Gf~GV~N 114 (268)
T PF09370_consen 93 PFRDMDRFLDELKELGFSGVQN 114 (268)
T ss_dssp TT--HHHHHHHHHHHT-SEEEE
T ss_pred CCCcHHHHHHHHHHhCCceEEE
Confidence 244455555554 89998874
|
Interestingly, this novel domain also exists as an N-terminal domain of sigma54-dependent transcriptional activators (enhancer-binding proteins). Because sigma54 dependent activators typically have a three-domain structure: the variable N-terminal regulatory (activation) domain involved in signal recognition/receiving, the central AAA-type ATPase domain, and the DNA-binding domain (see PIRSF003187 from PIRSF, PIRSF005263 from PIRSF, PIRSF003184 from PIRSF, PIRSF005263 from PIRSF, IPR014443 from INTERPRO for details), the proteins of the current entry may be predicted to play a role in signal recognition/receiving and signal transduction.; PDB: 2P10_C. |
| >PRK15063 isocitrate lyase; Provisional | Back alignment and domain information |
|---|
Probab=80.50 E-value=13 Score=37.71 Aligned_cols=86 Identities=23% Similarity=0.282 Sum_probs=55.6
Q ss_pred CCCEEEEecCCHHHHHHHHHcCCcEEEEcCCC--C------C-CCCCccchHH----HHHHHHHHhc--------C----
Q 017718 222 KLPILVKGVLTAEDARIAVQAGAAGIIVSNHG--A------R-QLDYVPATIM----ALEEVVKATQ--------G---- 276 (367)
Q Consensus 222 ~~Pv~vK~v~~~~~a~~~~~~G~d~i~vs~~g--g------~-~~~~~~~~~~----~l~~i~~~~~--------~---- 276 (367)
+.++..=++.++-.|..+.++|.++|.+|+.+ . . ..|.+.-+.+ .+.+|.+++. .
T Consensus 62 ~~~~~~~Ga~d~~~A~q~~~aGf~AIy~SG~~vAa~~~~s~~g~PD~~l~p~~~v~~~v~~I~~a~~~~d~~~~~~~~~~ 141 (428)
T PRK15063 62 EPYVNALGALTGNQAVQQVKAGLKAIYLSGWQVAADANLAGQMYPDQSLYPANSVPAVVKRINNALRRADQIQWSEGDKG 141 (428)
T ss_pred CCcEEecCCCCHHHHHHHHHhCCCEEEECHHHHhcCcccccCCCCCcccCCHHHHHHHHHHHHHHHHHhhhHhhhhcccc
Confidence 45676667889999999999999999998743 1 1 1244433333 3344443331 0
Q ss_pred --C--CcEEEec--CCCCHHHH---HHH-HHcCCCEEEech
Q 017718 277 --R--IPVFLDG--GVRRGTDV---FKA-LALGASGIFIGR 307 (367)
Q Consensus 277 --~--~~via~G--GI~~~~dv---~ka-l~lGAd~V~ig~ 307 (367)
+ +|||+|+ |..+...+ +|. +..||.+|.|--
T Consensus 142 ~~d~~~PIiADaDtGfGg~~nv~~~vk~~ieAGaAGIhiED 182 (428)
T PRK15063 142 YIDYFAPIVADAEAGFGGVLNAFELMKAMIEAGAAGVHFED 182 (428)
T ss_pred cccCCCCeEEECCCCCCCcHHHHHHHHHHHHcCCeEEEEeC
Confidence 2 8999976 66666655 343 458999998854
|
|
| >PF03102 NeuB: NeuB family; InterPro: IPR013132 NeuB is the prokaryotic N-acetylneuraminic acid synthase (Neu5Ac) | Back alignment and domain information |
|---|
Probab=80.04 E-value=16 Score=34.31 Aligned_cols=72 Identities=17% Similarity=0.248 Sum_probs=43.9
Q ss_pred cCCCEEEEecCCHHHHHHHHHcCCcEEEEcCCCCCCCCCccchHHHHHHHHHHhcCCCcEEEecCCCCHHHHHHHHH-c-
Q 017718 221 TKLPILVKGVLTAEDARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALA-L- 298 (367)
Q Consensus 221 ~~~Pv~vK~v~~~~~a~~~~~~G~d~i~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~~~via~GGI~~~~dv~kal~-l- 298 (367)
.++.++ -...+.+.+..+.+.|++++-+.. +-...+..|..+++ ...|||.+-|..+-+++.+++. +
T Consensus 68 ~gi~f~-stpfd~~s~d~l~~~~~~~~KIaS-------~dl~n~~lL~~~A~---tgkPvIlSTG~stl~EI~~Av~~~~ 136 (241)
T PF03102_consen 68 LGIDFF-STPFDEESVDFLEELGVPAYKIAS-------GDLTNLPLLEYIAK---TGKPVILSTGMSTLEEIERAVEVLR 136 (241)
T ss_dssp TT-EEE-EEE-SHHHHHHHHHHT-SEEEE-G-------GGTT-HHHHHHHHT---T-S-EEEE-TT--HHHHHHHHHHHH
T ss_pred cCCEEE-ECCCCHHHHHHHHHcCCCEEEecc-------ccccCHHHHHHHHH---hCCcEEEECCCCCHHHHHHHHHHHH
Confidence 355443 355788999999999999999942 22345667776654 3799999999999999988876 4
Q ss_pred --CCCEE
Q 017718 299 --GASGI 303 (367)
Q Consensus 299 --GAd~V 303 (367)
|..-+
T Consensus 137 ~~~~~~l 143 (241)
T PF03102_consen 137 EAGNEDL 143 (241)
T ss_dssp HHCT--E
T ss_pred hcCCCCE
Confidence 65433
|
It catalyses the direct formation of Neu5Ac (the most common sialic acid) by condensation of phosphoenolpyruvate (PEP) and N-acetylmannosamine (ManNAc). This reaction has only been observed in prokaryotes; eukaryotes synthesise the 9-phosphate form, Neu5Ac-9-P, and utilise ManNAc-6-P instead of ManNAc. Such eukaryotic enzymes are not present in this family []. This family also contains SpsE spore coat polysaccharide biosynthesis proteins.; GO: 0016051 carbohydrate biosynthetic process; PDB: 3G8R_B 1XUU_A 1XUZ_A 3CM4_A 2ZDR_A 1VLI_A 2WQP_A. |
Homologous Structure Templates
Structure Templates Detected by BLAST
Original result of BLAST against Protein Data Bank
| ID | Alignment Graph | Length |
Definition |
E-value | |
| Query | 367 | ||||
| 1gox_A | 370 | Refined Structure Of Spinach Glycolate Oxidase At 2 | 1e-179 | ||
| 1gyl_A | 369 | Involvement Of Tyr24 And Trp108 In Substrate Bindin | 1e-179 | ||
| 1al7_A | 359 | Three-Dimensional Structures Of Glycolate Oxidase W | 1e-178 | ||
| 2nzl_A | 392 | Crystal Structure Of Human Hydroxyacid Oxidase 1 Le | 1e-104 | ||
| 2rdt_A | 387 | Crystal Structure Of Human Glycolate Oxidase (Go) I | 1e-104 | ||
| 2w0u_A | 370 | Crystal Structure Of Human Glycolate Oxidase In Com | 1e-104 | ||
| 1tb3_A | 352 | Crystal Structure Analysis Of Recombinant Rat Kidne | 4e-74 | ||
| 2a7n_A | 380 | Crystal Structure Of The G81a Mutant Of The Active | 2e-72 | ||
| 1huv_A | 380 | Crystal Structure Of A Soluble Mutant Of The Membra | 5e-72 | ||
| 3sgz_A | 352 | High Resolution Crystal Structure Of Rat Long Chain | 8e-72 | ||
| 1qcw_A | 410 | Flavocytochrome B2, Arg289lys Mutant Length = 410 | 1e-65 | ||
| 1kbj_A | 412 | Crystallographic Study Of The Recombinant Flavin-Bi | 8e-65 | ||
| 1ltd_A | 506 | The 2.6 Angstroms Refined Structure Of The Escheric | 9e-65 | ||
| 1fcb_A | 511 | Molecular Structure Of Flavocytochrome B2 At 2.4 An | 1e-64 | ||
| 1ldc_A | 511 | X-Ray Structure Of Two Complexes Of The Y143f Flavo | 3e-64 | ||
| 1sze_A | 511 | L230a Mutant Flavocytochrome B2 With Benzoylformate | 4e-64 | ||
| 2oz0_A | 511 | Mechanistic And Structural Studies Of H373q Flavocy | 9e-64 | ||
| 1szf_A | 511 | A198g:l230a Mutant Flavocytochrome B2 With Pyruvate | 1e-63 | ||
| 2cdh_0 | 226 | Architecture Of The Thermomyces Lanuginosus Fungal | 2e-52 | ||
| 2j6x_A | 374 | The Crystal Structure Of Lactate Oxidase Length = 3 | 4e-46 | ||
| 2nli_A | 368 | Crystal Structure Of The Complex Between L-Lactate | 9e-46 | ||
| 2du2_A | 374 | Crystal Structure Analysis Of The L-Lactate Oxidase | 1e-45 | ||
| 1p0k_A | 349 | Ipp:dmapp Isomerase Type Ii Apo Structure Length = | 5e-04 |
| >pdb|1GOX|A Chain A, Refined Structure Of Spinach Glycolate Oxidase At 2 Angstroms Resolution Length = 370 | Back alignment and structure |
|
| >pdb|1GYL|A Chain A, Involvement Of Tyr24 And Trp108 In Substrate Binding And Substrate Specificity Of Glycolate Oxidase Length = 369 | Back alignment and structure |
|
| >pdb|1AL7|A Chain A, Three-Dimensional Structures Of Glycolate Oxidase With Bound Active- Site Inhibitors Length = 359 | Back alignment and structure |
|
| >pdb|2NZL|A Chain A, Crystal Structure Of Human Hydroxyacid Oxidase 1 Length = 392 | Back alignment and structure |
|
| >pdb|2RDT|A Chain A, Crystal Structure Of Human Glycolate Oxidase (Go) In Complex With Cdst Length = 387 | Back alignment and structure |
|
| >pdb|2W0U|A Chain A, Crystal Structure Of Human Glycolate Oxidase In Complex With The Inhibitor 5-[(4-Chlorophenyl)sulfanyl]- 1,2,3-Thiadiazole-4-Carboxylate. Length = 370 | Back alignment and structure |
|
| >pdb|1TB3|A Chain A, Crystal Structure Analysis Of Recombinant Rat Kidney Long- Chain Hydroxy Acid Oxidase Length = 352 | Back alignment and structure |
|
| >pdb|2A7N|A Chain A, Crystal Structure Of The G81a Mutant Of The Active Chimera Of (S)- Mandelate Dehydrogenase Length = 380 | Back alignment and structure |
|
| >pdb|1HUV|A Chain A, Crystal Structure Of A Soluble Mutant Of The Membrane-Associated (S)- Mandelate Dehydrogenase From Pseudomonas Putida At 2.15a Resolution Length = 380 | Back alignment and structure |
|
| >pdb|3SGZ|A Chain A, High Resolution Crystal Structure Of Rat Long Chain Hydroxy Acid Oxidase In Complex With The Inhibitor 4-Carboxy-5-[(4-Chiorophenyl) Sulfanyl]-1, 2, 3-Thiadiazole. Length = 352 | Back alignment and structure |
|
| >pdb|1QCW|A Chain A, Flavocytochrome B2, Arg289lys Mutant Length = 410 | Back alignment and structure |
|
| >pdb|1KBJ|A Chain A, Crystallographic Study Of The Recombinant Flavin-Binding Domain Of Baker's Yeast Flavocytochrome B2: Comparison With The Intact Wild- Type Enzyme Length = 412 | Back alignment and structure |
|
| >pdb|1LTD|A Chain A, The 2.6 Angstroms Refined Structure Of The Escherichia Coli Recombinant Saccharomyces Cerevisiae Flavocytochrome B2-Sulphite Complex Length = 506 | Back alignment and structure |
|
| >pdb|1FCB|A Chain A, Molecular Structure Of Flavocytochrome B2 At 2.4 Angstroms Resolution Length = 511 | Back alignment and structure |
|
| >pdb|1LDC|A Chain A, X-Ray Structure Of Two Complexes Of The Y143f Flavocytochrome B2 Mutant Crystallized In The Presence Of Lactate Or Phenyl-Lactate Length = 511 | Back alignment and structure |
|
| >pdb|1SZE|A Chain A, L230a Mutant Flavocytochrome B2 With Benzoylformate Length = 511 | Back alignment and structure |
|
| >pdb|2OZ0|A Chain A, Mechanistic And Structural Studies Of H373q Flavocytochrome B2: Effects Of Mutating The Active Site Base Length = 511 | Back alignment and structure |
|
| >pdb|1SZF|A Chain A, A198g:l230a Mutant Flavocytochrome B2 With Pyruvate Bound Length = 511 | Back alignment and structure |
|
| >pdb|2CDH|0 Chain 0, Architecture Of The Thermomyces Lanuginosus Fungal Fatty Acid Synthase At 5 Angstrom Resolution. Length = 226 | Back alignment and structure |
|
| >pdb|2J6X|A Chain A, The Crystal Structure Of Lactate Oxidase Length = 374 | Back alignment and structure |
|
| >pdb|2NLI|A Chain A, Crystal Structure Of The Complex Between L-Lactate Oxidase And A Substrate Analogue At 1.59 Angstrom Resolution Length = 368 | Back alignment and structure |
|
| >pdb|2DU2|A Chain A, Crystal Structure Analysis Of The L-Lactate Oxidase Length = 374 | Back alignment and structure |
|
| >pdb|1P0K|A Chain A, Ipp:dmapp Isomerase Type Ii Apo Structure Length = 349 | Back alignment and structure |
|
Structure Templates Detected by RPS-BLAST
Original result of RPS-BLAST against PDB70 database
| >1gox_A (S)-2-hydroxy-acid oxidase, peroxisomal; oxidoreductase (oxygen(A)); HET: FMN; 2.00A {Spinacia oleracea} SCOP: c.1.4.1 PDB: 1gyl_A* 1al8_A* 1al7_A* 2cdh_0 Length = 370 | Back alignment and structure |
|---|
Score = 637 bits (1646), Expect = 0.0
Identities = 324/368 (88%), Positives = 346/368 (94%), Gaps = 3/368 (0%)
Query: 3 EITNVMEYEAIAKEKLPKMVFDYYASGAEDQWTLQENRNAFSRILFRPRILIDVSKIDMN 62
EITNV EYEAIAK+KLPKMV+DYYASGAEDQWTL ENRNAFSRILFRPRILIDV+ IDM
Sbjct: 3 EITNVNEYEAIAKQKLPKMVYDYYASGAEDQWTLAENRNAFSRILFRPRILIDVTNIDMT 62
Query: 63 TTVLGFKISMPIMIAPTAMQKMAHPEGEYATARAASAAGTIMTLSSWSTSSVEEVASTGP 122
TT+LGFKISMPIMIAPTAMQKMAHPEGEYATARAASAAGTIMTLSSW+TSSVEEVASTGP
Sbjct: 63 TTILGFKISMPIMIAPTAMQKMAHPEGEYATARAASAAGTIMTLSSWATSSVEEVASTGP 122
Query: 123 GIRFFQLYVYKDRNVVAQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLTLK 182
GIRFFQLYVYKDRNVVAQLVRRAERAGFKAIALTVDTPRLGRREADIKNRF LPPFLTLK
Sbjct: 123 GIRFFQLYVYKDRNVVAQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFVLPPFLTLK 182
Query: 183 NFQGLDLGKMDEANDSGLAAYVAGQIDRSLSWK---WLQTITKLPILVKGVLTAEDARIA 239
NF+G+DLGKMD+ANDSGL++YVAGQIDRSLSWK WLQTIT LPILVKGV+TAEDAR+A
Sbjct: 183 NFEGIDLGKMDKANDSGLSSYVAGQIDRSLSWKDVAWLQTITSLPILVKGVITAEDARLA 242
Query: 240 VQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALG 299
VQ GAAGIIVSNHGARQLDYVPATIMALEEVVKA QGRIPVFLDGGVRRGTDVFKALALG
Sbjct: 243 VQHGAAGIIVSNHGARQLDYVPATIMALEEVVKAAQGRIPVFLDGGVRRGTDVFKALALG 302
Query: 300 ASGIFIGRPVVYSLAAEGEKGVRRVLEMLREEFELAMALSGCRSLKEITRDHIVTEWDAS 359
A+G+FIGRPVV+SLAAEGE GV++VL+M+R+EFEL MALSGCRSLKEI+R HI +WD
Sbjct: 303 AAGVFIGRPVVFSLAAEGEAGVKKVLQMMRDEFELTMALSGCRSLKEISRSHIAADWDGP 362
Query: 360 LPRPVPRL 367
R V RL
Sbjct: 363 SSRAVARL 370
|
| >2nzl_A Hydroxyacid oxidase 1; HAOX1, glycolate oxidase, GOX, GOX1, structural genomics, structural genom consortium, SGC, oxidoreductase; HET: FMN; 1.35A {Homo sapiens} PDB: 2rdu_A* 2rdt_A* 2rdw_A* 2w0u_A* Length = 392 | Back alignment and structure |
|---|
Score = 595 bits (1536), Expect = 0.0
Identities = 204/374 (54%), Positives = 269/374 (71%), Gaps = 12/374 (3%)
Query: 1 MGEITNVMEYEAIAKEKLPKMVFDYYASGAEDQWTLQENRNAFSRILFRPRILIDVSKID 60
+ + + +YE AK LPK ++DYY SGA D+ TL +N AFSR PR+L +V++ D
Sbjct: 24 LPRLICINDYEQHAKSVLPKSIYDYYRSGANDEETLADNIAAFSRWKLYPRMLRNVAETD 83
Query: 61 MNTTVLGFKISMPIMIAPTAMQKMAHPEGEYATARAASAAGTIMTLSSWSTSSVEEVAST 120
++T+VLG ++SMPI + TAMQ+MAH +GE AT RA + GT M LSSW+TSS+EEVA
Sbjct: 84 LSTSVLGQRVSMPICVGATAMQRMAHVDGELATVRACQSLGTGMMLSSWATSSIEEVAEA 143
Query: 121 GP-GIRFFQLYVYKDRNVVAQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFTLPPFL 179
GP +R+ QLY+YKDR V +LVR+AE+ G+KAI +TVDTP LG R D++NRF LPP L
Sbjct: 144 GPEALRWLQLYIYKDREVTKKLVRQAEKMGYKAIFVTVDTPYLGNRLDDVRNRFKLPPQL 203
Query: 180 TLKNFQGLDLGKMDEAN---DSGLAAYVAGQIDRSLSWK---WLQTITKLPILVKGVLTA 233
+KNF+ L E N DSGLAAYVA ID S+SW+ WL+ +T LPI+ KG+L
Sbjct: 204 RMKNFETSTLSFSPEENFGDDSGLAAYVAKAIDPSISWEDIKWLRRLTSLPIVAKGILRG 263
Query: 234 EDARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVF 293
+DAR AV+ G GI+VSNHGARQLD VPATI L E+V+A +G++ VFLDGGVR+GTDV
Sbjct: 264 DDAREAVKHGLNGILVSNHGARQLDGVPATIDVLPEIVEAVEGKVEVFLDGGVRKGTDVL 323
Query: 294 KALALGASGIFIGRPVVYSLAAEGEKGVRRVLEMLREEFELAMALSGCRSLKEITRDHIV 353
KALALGA +F+GRP+V+ LA +GEKGV+ VLE+L+EEF LAMALSGC+++K I + +
Sbjct: 324 KALALGAKAVFVGRPIVWGLAFQGEKGVQDVLEILKEEFRLAMALSGCQNVKVIDKTLVR 383
Query: 354 TEWDASLPRPVPRL 367
P V ++
Sbjct: 384 KN-----PLAVSKI 392
|
| >1p4c_A L(+)-mandelate dehydrogenase; TIM barrel, hydroxy acid oxidizing enzyme, oxidoreductase; HET: FMN MES; 1.35A {Pseudomonas putida} SCOP: c.1.4.1 PDB: 1huv_A* 1p5b_A* 3giy_A* 2a7p_A* 2a85_A* 2a7n_A* Length = 380 | Back alignment and structure |
|---|
Score = 578 bits (1493), Expect = 0.0
Identities = 151/367 (41%), Positives = 224/367 (61%), Gaps = 9/367 (2%)
Query: 3 EITNVMEYEAIAKEKLPKMVFDYYASGAEDQWTLQENRNAFSRILFRPRILIDVSKIDMN 62
+ NV +Y +A+++LPKMV+DY GAED++ ++ NR+ F + F+P+ L+DVS+ +
Sbjct: 4 NLFNVEDYRKLAQKRLPKMVYDYLEGGAEDEYGVKHNRDVFQQWRFKPKRLVDVSRRSLQ 63
Query: 63 TTVLGFKISMPIMIAPTAMQKMAHPEGEYATARAASAAGTIMTLSSWSTSSVEEVASTGP 122
VLG + SMP++I PT + P+G+ A ARAA+ AG LS+ S S+E++A
Sbjct: 64 AEVLGKRQSMPLLIGPTGLNGALWPKGDLALARAATKAGIPFVLSTASNMSIEDLARQCD 123
Query: 123 GIRFFQLYVYKDRNVVAQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLTLK 182
G +FQLYV R + +V +A G+ + LT D G RE D+ NRF +PPFLTLK
Sbjct: 124 GDLWFQLYVIH-REIAQGMVLKALHTGYTTLVLTTDVAVNGYRERDLHNRFKIPPFLTLK 182
Query: 183 NFQGLDLGKMDEANDSGLAAYVAGQIDRSLSWK---WLQTITKLPILVKGVLTAEDARIA 239
NF+G+DLGKMD+AN AA ++ Q+D S +W+ WL+ + +LVKG+L+AEDA
Sbjct: 183 NFEGIDLGKMDKANLEMQAALMSRQMDASFNWEALRWLRDLWPHKLLVKGLLSAEDADRC 242
Query: 240 VQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALG 299
+ GA G+I+SNHG RQLD + + L + V PV +D G RRG+D+ KALALG
Sbjct: 243 IAEGADGVILSNHGGRQLDCAISPMEVLAQSVAK--TGKPVLIDSGFRRGSDIVKALALG 300
Query: 300 ASGIFIGRPVVYSLAAEGEKGVRRVLEMLREEFELAMALSGCRSLKEITRDHIVTEWDAS 359
A + +GR +Y LAA GE GV VL +L+ + + +A GC + ++ D++ E
Sbjct: 301 AEAVLLGRATLYGLAARGETGVDEVLTLLKADIDRTLAQIGCPDITSLSPDYLQNE---G 357
Query: 360 LPRPVPR 366
+ P
Sbjct: 358 VTNTAPV 364
|
| >3sgz_A Hydroxyacid oxidase 2; flavoprotein, homology, INH oxidoreductase-oxidoreductase inhibitor complex; HET: FMN HO6; 1.35A {Rattus norvegicus} PDB: 1tb3_A* Length = 352 | Back alignment and structure |
|---|
Score = 576 bits (1486), Expect = 0.0
Identities = 156/356 (43%), Positives = 222/356 (62%), Gaps = 11/356 (3%)
Query: 4 ITNVMEYEAIAKEKLPKMVFDYYASGAEDQWTLQENRNAFSRILFRPRILIDVSKIDMNT 63
+ + +++A A+++L K +D+ A+D T EN AF RI RPR L D+SK+D T
Sbjct: 2 LVCLADFKAHAQKQLSKTSWDFIEGEADDGITYSENIAAFKRIRLRPRYLRDMSKVDTRT 61
Query: 64 TVLGFKISMPIMIAPTAMQKMAHPEGEYATARAASAAGTIMTLSSWSTSSVEEVASTGP- 122
T+ G +IS PI I+PTA +A P+GE +TARAA A +SS+++ S+E++ + P
Sbjct: 62 TIQGQEISAPICISPTAFHSIAWPDGEKSTARAAQEANICYVISSYASYSLEDIVAAAPE 121
Query: 123 GIRFFQLYVYKDRNVVAQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLTLK 182
G R+FQLY+ D + Q+V+RAE GFKA+ +T+DTP LG R D +N+ L +
Sbjct: 122 GFRWFQLYMKSDWDFNKQMVQRAEALGFKALVITIDTPVLGNRRRDKRNQLNLEANILKA 181
Query: 183 NFQGLDLGKMDEANDSGLAAYVAGQIDRSLSWK---WLQTITKLPILVKGVLTAEDARIA 239
+ L + + S W LQ+IT+LPI++KG+LT EDA +A
Sbjct: 182 ALRALK-------EEKPTQSVPVLFPKASFCWNDLSLLQSITRLPIILKGILTKEDAELA 234
Query: 240 VQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALG 299
++ GI+VSNHG RQLD V A+I AL EVV A +G+I V++DGGVR GTDV KALALG
Sbjct: 235 MKHNVQGIVVSNHGGRQLDEVSASIDALREVVAAVKGKIEVYMDGGVRTGTDVLKALALG 294
Query: 300 ASGIFIGRPVVYSLAAEGEKGVRRVLEMLREEFELAMALSGCRSLKEITRDHIVTE 355
A IF+GRP+++ LA +GE GV+ VL++L E M LSGC+S+ EI+ D I
Sbjct: 295 ARCIFLGRPILWGLACKGEDGVKEVLDILTAELHRCMTLSGCQSVAEISPDLIQFS 350
|
| >2nli_A Lactate oxidase; flavoenzyme, FMN, D-lactate, oxidoreducta; HET: FMN; 1.59A {Aerococcus viridans} PDB: 2zfa_A* 2du2_A* 2e77_A* 2j6x_A* Length = 368 | Back alignment and structure |
|---|
Score = 573 bits (1480), Expect = 0.0
Identities = 118/357 (33%), Positives = 190/357 (53%), Gaps = 10/357 (2%)
Query: 3 EITNVMEYEAIAKEKLPKMVFDYYASGAEDQWTLQENRNAFSRILFRPRILIDVSKIDMN 62
++ N + E A + +P F+Y A + D+WT + N A+ L PR+ DV D +
Sbjct: 12 DVVNTYDLEEEASKVVPHGGFNYIAGASGDEWTKRANDRAWKHKLLYPRLAQDVEAPDTS 71
Query: 63 TTVLGFKISMPIMIAPTAMQKMAHPEGEYATARAASAAGTIMTLSSWSTSSVEEVASTGP 122
T +LG KI P ++AP A +AH E TARA S GTIM++S++S ++ EE++
Sbjct: 72 TEILGHKIKAPFIMAPIAAHGLAHTTKEAGTARAVSEFGTIMSISAYSGATFEEISEGLN 131
Query: 123 -GIRFFQLYVYKDRNVVAQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLTL 181
G R+FQ+Y+ KD ++ A+ G AI LT D+ G R+ D+KN+F P + +
Sbjct: 132 GGPRWFQIYMAKDDQQNRDILDEAKSDGATAIILTADSTVSGNRDRDVKNKFVYPFGMPI 191
Query: 182 KNFQGLDLGKMDEANDSGLAAYVAGQIDRSLSWK---WLQTITKLPILVKGVLTAEDARI 238
+ + + G + +S + + + LP+ VKG+ EDA +
Sbjct: 192 VQR------YLRGTAEGMSLNNIYGASKQKISPRDIEEIAGHSGLPVFVKGIQHPEDADM 245
Query: 239 AVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALAL 298
A++ GA+GI VSNHGARQL P + L + + R+P+ D GVRRG V KALA
Sbjct: 246 AIKRGASGIWVSNHGARQLYEAPGSFDTLPAIAERVNKRVPIVFDSGVRRGEHVAKALAS 305
Query: 299 GASGIFIGRPVVYSLAAEGEKGVRRVLEMLREEFELAMALSGCRSLKEITRDHIVTE 355
GA + +GRPV++ LA G +G VL+ +++ M L+G ++++++ +
Sbjct: 306 GADVVALGRPVLFGLALGGWQGAYSVLDYFQKDLTRVMQLTGSQNVEDLKGLDLFDN 362
|
| >1kbi_A Cytochrome B2, L-LCR; flavocytochrome B2, electron transfer, oxidoreductase; HET: HEM FMN; 2.30A {Saccharomyces cerevisiae} SCOP: c.1.4.1 d.120.1.1 PDB: 1fcb_A* 1lco_A* 1ldc_A* 1sze_A* 2oz0_A* 1szf_A* 1szg_A* 1ltd_A* 1kbj_A* 1qcw_A* 3ks0_A* Length = 511 | Back alignment and structure |
|---|
Score = 559 bits (1443), Expect = 0.0
Identities = 138/380 (36%), Positives = 216/380 (56%), Gaps = 20/380 (5%)
Query: 1 MGEITNVMEYEAIAKEKLPKMVFDYYASGAEDQWTLQENRNAFSRILFRPRILIDVSKID 60
+ I N+ ++E +A + L K + YY+SGA D+ T +EN NA+ RI F+P+IL+DV K+D
Sbjct: 119 LDNIINLYDFEYLASQTLTKQAWAYYSSGANDEVTHRENHNAYHRIFFKPKILVDVRKVD 178
Query: 61 MNTTVLGFKISMPIMIAPTAMQKMAHP---EGEYATARAASAAGTIMTLSSWSTSSVEEV 117
++T +LG + +P ++ TA+ K+ +P E + A +S+ ++ S EE+
Sbjct: 179 ISTDMLGSHVDVPFYVSATALCKLGNPLEGEKDVARGCGQGVTKVPQMISTLASCSPEEI 238
Query: 118 ASTGPG---IRFFQLYVYKDRNVVAQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFT 174
P I+++QLYV DR + LV+ E+ G KA+ +TVD P LG+RE D+K +F+
Sbjct: 239 IEAAPSDKQIQWYQLYVNSDRKITDDLVKNVEKLGVKALFVTVDAPSLGQREKDMKLKFS 298
Query: 175 LPPFLTLKNFQGLDLGKMDEANDSGLAAYVAGQIDRSLSWK---WLQTITKLPILVKGVL 231
+ + G + ++ ID SL+WK L+ TKLPI++KGV
Sbjct: 299 NTKAGPKAMKKT------NVEESQGASRALSKFIDPSLTWKDIEELKKKTKLPIVIKGVQ 352
Query: 232 TAEDARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQ-----GRIPVFLDGGV 286
ED A + G +G+++SNHG RQLD+ A I L E + + ++ VF+DGGV
Sbjct: 353 RTEDVIKAAEIGVSGVVLSNHGGRQLDFSRAPIEVLAETMPILEQRNLKDKLEVFVDGGV 412
Query: 287 RRGTDVFKALALGASGIFIGRPVVYSLAAEGEKGVRRVLEMLREEFELAMALSGCRSLKE 346
RRGTDV KAL LGA G+ +GRP +Y+ + G GV + +E+LR+E E++M L G S+ E
Sbjct: 413 RRGTDVLKALCLGAKGVGLGRPFLYANSCYGRNGVEKAIEILRDEIEMSMRLLGVTSIAE 472
Query: 347 ITRDHIVTEWDASLPRPVPR 366
+ D + + VP
Sbjct: 473 LKPDLLDLSTLKARTVGVPN 492
|
| >3sr7_A Isopentenyl-diphosphate delta-isomerase; isopentenyl pyrophosphate isomerase, TIM-barrel; 2.04A {Streptococcus mutans} Length = 365 | Back alignment and structure |
|---|
Score = 290 bits (743), Expect = 3e-96
Identities = 56/371 (15%), Positives = 118/371 (31%), Gaps = 58/371 (15%)
Query: 4 ITNVMEYEAIAKEKLPKMVFDYYASGAEDQWTLQENRNAFSRILFRPRIL--IDVSKIDM 61
+ ++ + + + + D+ A D + N+F I L D+++ID+
Sbjct: 21 MASMTGGQQMGRGSMTNRKDDHI-KYALDY---RSPYNSFDDIELIHHSLPDYDLAEIDL 76
Query: 62 NTTVLGFKISMPIMIAPTAMQKMAHPEGEYATARAASAAGTIMTLSSWSTSSVEEVASTG 121
+T G P I E A+ A G + S
Sbjct: 77 STHFAGQDFDFPFYINAMTGGSQKGKEVNEKLAQVADTCGLLFVTGS------------- 123
Query: 122 PGIRFFQLYVYKDRNVVAQLVRRAERAGFKAIALTVDTPRLGRREA-DIKNRFTLPPFLT 180
K+ + + V+++ A + +D P +A L +
Sbjct: 124 ------YSTALKNPDDTSYQVKKSRPHLLLATNIGLDKPYQAGLQAVRDLQPLFLQVHIN 177
Query: 181 LKNFQGLDLGKMDEANDSGLAAYVAGQIDRSLSWKWLQTITKLPILVKGV---LTAEDAR 237
L + G+ + ++ +LP ++K V + + +
Sbjct: 178 LMQELLMPEGERE---FRSWKKHL----------SDYAKKLQLPFILKEVGFGMDVKTIQ 224
Query: 238 IAVQAGAAGIIVSNHGARQLDYVPA---------------TIMALEEVVKATQGRIPVFL 282
A+ G + +S G Y+ T L + ++ +
Sbjct: 225 TAIDLGVKTVDISGRGGTSFAYIENRRGGNRSYLNQWGQTTAQVLLNA-QPLMDKVEILA 283
Query: 283 DGGVRRGTDVFKALALGASGIFIGRPVVYSLAAEGEKGVRRVLEMLREEFELAMALSGCR 342
GG+R D+ KAL LGA + + R ++ + V ++ +E+ L M C+
Sbjct: 284 SGGIRHPLDIIKALVLGAKAVGLSRTMLELVEQHSVHEVIAIVNGWKEDLRLIMCALNCQ 343
Query: 343 SLKEITRDHIV 353
++ E+ +
Sbjct: 344 TIAELRNVDYL 354
|
| >1p0k_A Isopentenyl-diphosphate delta-isomerase; terpene biosynthesis, dimethylallyl diphosphate, flavoprotein; 1.90A {Bacillus subtilis} SCOP: c.1.4.1 PDB: 1p0n_A* Length = 349 | Back alignment and structure |
|---|
Score = 258 bits (662), Expect = 2e-84
Identities = 66/349 (18%), Positives = 129/349 (36%), Gaps = 60/349 (17%)
Query: 35 TLQENRNAFSRILFRPRIL--IDVSKIDMNTTVLGFKISMPIMIAP-TAMQKMAHPEGEY 91
Q+ I F L + + ++D++T + S PI I T E
Sbjct: 17 IGQKRETGLDDITFVHVSLPDLALEQVDISTKIGELSSSSPIFINAMTGGGGKLTYEINK 76
Query: 92 ATARAASAAGTIMTLSSWSTSSVEEVASTGPGIRFFQLYVYKDRNVVAQLVRRAERAGFK 151
+ ARAAS AG + + S ++ + ++VR+ G
Sbjct: 77 SLARAASQAGIPLAVGSQMSALKDPSERLS-----------------YEIVRKENPNGLI 119
Query: 152 AIALTVDTPRLGRREA-DIKNRFTLPPFLTLKNFQGLDLGKMDEANDSGLAAYVAGQIDR 210
L + +EA ++ L + L + E G
Sbjct: 120 FANLGSEATAAQAKEAVEMIGANALQ----------IHLNVIQEIVMPE------GDRSF 163
Query: 211 SLSW---KWLQTITKLPILVKGV---LTAEDARIAVQAGAAGIIVSNHGARQLDYVP--- 261
S + + + + +P++VK V ++ A +AGAA + + +G +
Sbjct: 164 SGALKRIEQICSRVSVPVIVKEVGFGMSKASAGKLYEAGAAAVDIGGYGGTNFSKIENLR 223
Query: 262 -------------ATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFIGRP 308
+T +L E+ + GG++ DV KA+ALGAS +
Sbjct: 224 RQRQISFFNSWGISTAASLAEIRSE-FPASTMIASGGLQDALDVAKAIALGASCTGMAGH 282
Query: 309 VVYSLAAEGEKGVRRVLEMLREEFELAMALSGCRSLKEITRDHIVTEWD 357
+ +L GE+G+ ++++ EE +L M + G R++ ++ + +V + +
Sbjct: 283 FLKALTDSGEEGLLEEIQLILEELKLIMTVLGARTIADLQKAPLVIKGE 331
|
| >3vkj_A Isopentenyl-diphosphate delta-isomerase; type 2 isopentenyl diphosphate isomerase; HET: FNR; 1.70A {Sulfolobus shibatae} PDB: 2zrv_A* 2zrw_A* 2zrx_A* 2zry_A* 2zrz_A* 3b03_A* 3b04_A* 3b05_A* 3b06_A* 2zru_A* Length = 368 | Back alignment and structure |
|---|
Score = 225 bits (574), Expect = 5e-71
Identities = 60/362 (16%), Positives = 118/362 (32%), Gaps = 61/362 (16%)
Query: 24 DYYASGAEDQWTLQENRNAFSRILFRPRIL--IDVSKIDMNTTVLGFKISMPIMIAP-TA 80
++ A + + + ++ + I S+I+ T +IS+P+M+ T
Sbjct: 10 EHVEIAAFENVDGLSSSTFLNDVILVHQGFPGISFSEINTKTKFFRKEISVPVMVTGMTG 69
Query: 81 MQKMAHPEGEYATARAASAAGTIMTLSSWSTSSVEEVASTGPGIRFFQLYVYKDRNVVAQ 140
+ A A G M + S + + A
Sbjct: 70 GRNELG-RINKIIAEVAEKFGIPMGVGSQRVAIEKAEARES-----------------FA 111
Query: 141 LVRRAERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLTLKNFQGLDLGKMDEANDSGL 200
+VR+ L + G + ++ + + + +
Sbjct: 112 IVRKVAPTIPIIANLGMPQLVKGYGLKEFQDAIQMIEADAIA---------VHLNPAQEV 162
Query: 201 AAYVAGQIDRSLSWKWLQTI---TKLPILVKGV---LTAEDARIAVQAGAAGIIVSNHG- 253
+ + + L+ I +PI+VK ++ E A++ G S G
Sbjct: 163 FQPEGEPEYQIYALEKLRDISKELSVPIIVKESGNGISMETAKLLYSYGIKNFDTSGQGG 222
Query: 254 ----------------------ARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTD 291
LD+ T ++ EV + + GG+R G D
Sbjct: 223 TNWIAIEMIRDIRRGNWKAESAKNFLDWGVPTAASIMEVRYSVPD-SFLVGSGGIRSGLD 281
Query: 292 VFKALALGASGIFIGRPVVYSLAAEGEKGVRRVLEMLREEFELAMALSGCRSLKEITRDH 351
KA+ALGA + PV+ S A EG++ + + + E + AM L+G + + + +
Sbjct: 282 AAKAIALGADIAGMALPVLKS-AIEGKESLEQFFRKIIFELKAAMMLTGSKDVDALKKTS 340
Query: 352 IV 353
IV
Sbjct: 341 IV 342
|
| >1vcf_A Isopentenyl-diphosphate delta-isomerase; TIM barrel, structural genomics, riken structural genomics/P initiative, RSGI; HET: FMN; 2.60A {Thermus thermophilus} SCOP: c.1.4.1 PDB: 1vcg_A* 3dh7_A* Length = 332 | Back alignment and structure |
|---|
Score = 181 bits (461), Expect = 1e-54
Identities = 75/353 (21%), Positives = 114/353 (32%), Gaps = 71/353 (20%)
Query: 29 GAEDQWTLQENRNAFSRILFRPRIL--IDVSKIDMNTTVLGFKISMPIMIAPTAMQKMAH 86
E + Q+ R + L + +S++D+ T LG + P +I +
Sbjct: 14 CLEGEVAYQKTTTGLEGFRLRYQALAGLALSEVDLTTPFLGKTLKAPFLIGAMTGGEENG 73
Query: 87 PEGEYATARAASAAGTIMTLSSWSTSSVEEVASTGPGIR--------FFQLYVYKDRNV- 137
A A AA A G M L S A +R L + + R
Sbjct: 74 ERINLALAEAAEALGVGMMLGSGRILLERPEALRSFRVRKVAPKALLIANLGLAQLRRYG 133
Query: 138 VAQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLTLKNFQGLDLGKMDEAND 197
L+R E A+A V+ + + +F+GL
Sbjct: 134 RDDLLRLVEMLEADALAFHVNPLQEAVQR-------------GDTDFRGL---------- 170
Query: 198 SGLAAYVAGQIDRSLSWKWLQTITKLPILVKGV---LTAEDARIAVQAGAAGIIVSNHGA 254
+ P++VK V L+ E A A + V+ G
Sbjct: 171 --------------VERLAELLPLPFPVMVKEVGHGLSREAALALRDLPLAAVDVAGAGG 216
Query: 255 RQLDYVPA------------------TIMALEEVVKATQGRIPVFLDGGVRRGTDVFKAL 296
V T A+ EV + +P+ GGV GTD KAL
Sbjct: 217 TSWARVEEWVRFGEVRHPELCEIGIPTARAILEV-REVLPHLPLVASGGVYTGTDGAKAL 275
Query: 297 ALGASGIFIGRPVVYSLAAEGEKGVRRVLEMLREEFELAMALSGCRSLKEITR 349
ALGA + + RP++ A EG + V + EE A+ G R+ KE
Sbjct: 276 ALGADLLAVARPLLR-PALEGAERVAAWIGDYLEELRTALFAIGARNPKEARG 327
|
| >2qr6_A IMP dehydrogenase/GMP reductase; NP_599840.1, G reductase domain, structural genomics, joint center for STR genomics, JCSG; HET: MSE; 1.50A {Corynebacterium glutamicum atcc 13032} Length = 393 | Back alignment and structure |
|---|
Score = 50.2 bits (120), Expect = 4e-07
Identities = 52/273 (19%), Positives = 88/273 (32%), Gaps = 32/273 (11%)
Query: 54 IDVSKIDMNTTVLGFKISMPIMIAPTAMQKMAHPEGEYATARAASAAGTIMTLSSWSTSS 113
+D + +K +P M P +A E+ ++
Sbjct: 50 RSSKDVDTTWHIDAYKFDLPFMNHP--SDALA--SPEFVIEMGKQGGLGVINAEG----L 101
Query: 114 VEEVASTGPGIRFFQLYVYKDRNVVAQLVRR-------AERAGFKAIALTVDTPRLGRRE 166
A I + A + + IA D+ +
Sbjct: 102 WGRHADLDEAIAKVIAAYEEGDQAAATRTLQELHAAPLDTELLSERIAQVRDSGEIVAVR 161
Query: 167 ADIKNRFTLPPFLTLKNFQGLDLGKMDEANDSGLAAYVAGQIDRSLSWKWLQTITKLPIL 226
+N + P + G DL + A +V + L+ K +P++
Sbjct: 162 VSPQNVREIAPIVIK---AGADLLVIQGTL--ISAEHVNTGGEA-LNLKEFIGSLDVPVI 215
Query: 227 VKGVLTAEDARIAVQAGAAGIIV-----SNHGARQLDYVPAT-IM----ALEEVVKATQG 276
GV A ++ GA GIIV +N A ++ AT I A + + T G
Sbjct: 216 AGGVNDYTTALHMMRTGAVGIIVGGGENTNSLALGMEVSMATAIADVAAARRDYLDETGG 275
Query: 277 R-IPVFLDGGVRRGTDVFKALALGASGIFIGRP 308
R + + DG + DV KA+A GA + +G P
Sbjct: 276 RYVHIIADGSIENSGDVVKAIACGADAVVLGSP 308
|
| >3igs_A N-acetylmannosamine-6-phosphate 2-epimerase 2; energy metabolism, sugars, csgid, carbohydrate metabolism, isomerase; HET: MSE 16G; 1.50A {Salmonella enterica subsp} Length = 232 | Back alignment and structure |
|---|
Score = 47.0 bits (111), Expect = 3e-06
Identities = 13/78 (16%), Positives = 25/78 (32%), Gaps = 2/78 (2%)
Query: 229 GVLTAEDARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRR 288
+ +D + GA I + G D + L + + V +G
Sbjct: 135 DCSSVDDGLACQRLGADIIGTTMSGYTTPDTPEEPDLPLVKALHDA--GCRVIAEGRYNS 192
Query: 289 GTDVFKALALGASGIFIG 306
+A+ GA + +G
Sbjct: 193 PALAAEAIRYGAWAVTVG 210
|
| >3ffs_A Inosine-5-monophosphate dehydrogenase; beta-alpha barrel, TIM fold, oxidoreductase; 3.19A {Cryptosporidium parvum} Length = 400 | Back alignment and structure |
|---|
Score = 47.2 bits (113), Expect = 4e-06
Identities = 32/106 (30%), Positives = 50/106 (47%), Gaps = 21/106 (19%)
Query: 215 KWLQTITKLPILVKGVLTAEDARIAVQAGAAGI-------------IVSNHGARQLDYVP 261
K +++ + ++V V+T E + ++ GA GI IV+ G Q
Sbjct: 177 KEIKSKMNIDVIVGNVVTEEATKELIENGADGIKVGIGPGSICTTRIVAGVGVPQ----- 231
Query: 262 ATIMALEEVVKATQGR-IPVFLDGGVRRGTDVFKALALGASGIFIG 306
I A+E+ IP+ DGG+R D+ KALA+GAS + IG
Sbjct: 232 --ITAIEKCSSVASKFGIPIIADGGIRYSGDIGKALAVGASSVMIG 275
|
| >3khj_A Inosine-5-monophosphate dehydrogenase; enzyme-inhibitor complex, oxidoreductase; HET: IMP C64; 2.80A {Cryptosporidium parvum} Length = 361 | Back alignment and structure |
|---|
Score = 46.1 bits (110), Expect = 8e-06
Identities = 32/106 (30%), Positives = 50/106 (47%), Gaps = 21/106 (19%)
Query: 215 KWLQTITKLPILVKGVLTAEDARIAVQAGAAGI-------------IVSNHGARQLDYVP 261
K +++ + ++V V+T E + ++ GA GI IV+ G Q
Sbjct: 138 KEIKSKMNIDVIVGNVVTEEATKELIENGADGIKVGIGPGSICTTRIVAGVGVPQ----- 192
Query: 262 ATIMALEEVVKATQGR-IPVFLDGGVRRGTDVFKALALGASGIFIG 306
I A+E+ IP+ DGG+R D+ KALA+GAS + IG
Sbjct: 193 --ITAIEKCSSVASKFGIPIIADGGIRYSGDIGKALAVGASSVMIG 236
|
| >1eep_A Inosine 5'-monophosphate dehydrogenase; alpha-beta barrel, TIM barrel, IMPDH, IMP dehydrogenase, LOO purine biosynthesis, oxidoreductase; 2.40A {Borrelia burgdorferi} SCOP: c.1.5.1 Length = 404 | Back alignment and structure |
|---|
Score = 44.5 bits (106), Expect = 3e-05
Identities = 28/99 (28%), Positives = 42/99 (42%), Gaps = 21/99 (21%)
Query: 222 KLPILVKGVLTAEDARIAVQAGAAGI-------------IVSNHGARQLDYVPATIMALE 268
L ++ ++T E A + GA + IV+ G Q I A+
Sbjct: 194 NLDLIAGNIVTKEAALDLISVGADCLKVGIGPGSICTTRIVAGVGVPQ-------ITAIC 246
Query: 269 EVVKATQGR-IPVFLDGGVRRGTDVFKALALGASGIFIG 306
+V +A I + DGG+R DV KA+A GA + IG
Sbjct: 247 DVYEACNNTNICIIADGGIRFSGDVVKAIAAGADSVMIG 285
|
| >1yxy_A Putative N-acetylmannosamine-6-phosphate 2-epimer; structural genomics, epimerase, PSI, structure initiative; 1.60A {Streptococcus pyogenes} SCOP: c.1.2.5 Length = 234 | Back alignment and structure |
|---|
Score = 43.4 bits (102), Expect = 4e-05
Identities = 16/82 (19%), Positives = 32/82 (39%), Gaps = 1/82 (1%)
Query: 225 ILVKGVLTAEDARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDG 284
+L+ + T ++ +A QAG + + G + + + I V +G
Sbjct: 135 LLMADISTFDEGLVAHQAGIDFVGTTLSGYTPYS-RQEAGPDVALIEALCKAGIAVIAEG 193
Query: 285 GVRRGTDVFKALALGASGIFIG 306
+ + K LG +GI +G
Sbjct: 194 KIHSPEEAKKINDLGVAGIVVG 215
|
| >4fo4_A Inosine 5'-monophosphate dehydrogenase; structural genomics, IMPDH, IMP, mycophenolic acid, MOA; HET: IMP MOA; 2.03A {Vibrio cholerae o1 biovar el tor} PDB: 4ff0_A* 4fez_A Length = 366 | Back alignment and structure |
|---|
Score = 44.2 bits (105), Expect = 4e-05
Identities = 31/99 (31%), Positives = 44/99 (44%), Gaps = 21/99 (21%)
Query: 222 KLPILVKGVLTAEDARIAVQAGAAGI-------------IVSNHGARQLDYVPATIMALE 268
L I+ V TAE AR ++AG + + IV+ G Q I A+
Sbjct: 149 HLEIIGGNVATAEGARALIEAGVSAVKVGIGPGSICTTRIVTGVGVPQ-------ITAIA 201
Query: 269 EVVKATQGR-IPVFLDGGVRRGTDVFKALALGASGIFIG 306
+ IPV DGG+R D+ KA+A GAS + +G
Sbjct: 202 DAAGVANEYGIPVIADGGIRFSGDISKAIAAGASCVMVG 240
|
| >1jcn_A Inosine monophosphate dehydrogenase I; IMPD, IMPDH, guanine nucleotide synthesis, oxidoreductase; HET: CPR; 2.50A {Homo sapiens} SCOP: c.1.5.1 d.37.1.1 PDB: 1jr1_A* 1nf7_A* 1b3o_A* 1nfb_A* Length = 514 | Back alignment and structure |
|---|
Score = 44.1 bits (105), Expect = 5e-05
Identities = 30/116 (25%), Positives = 48/116 (41%), Gaps = 25/116 (21%)
Query: 206 GQIDRSLSWKWL-QTITKLPILVKGVLTAEDARIAVQAGAAGI-------------IVSN 251
QI ++ Q L ++ V+TA A+ + AG G+ V
Sbjct: 282 YQIAMV---HYIKQKYPHLQVIGGNVVTAAQAKNLIDAGVDGLRVGMGCGSICITQEVMA 338
Query: 252 HGARQLDYVPATIMALEEVVKATQGR-IPVFLDGGVRRGTDVFKALALGASGIFIG 306
G Q A+ +V + + +P+ DGG++ V KALALGAS + +G
Sbjct: 339 CGRPQ-------GTAVYKVAEYARRFGVPIIADGGIQTVGHVVKALALGASTVMMG 387
|
| >1me8_A Inosine-5'-monophosphate dehydrogenase; alpha beta barrel, oxidoreductase; HET: RVP; 1.90A {Tritrichomonas foetus} SCOP: c.1.5.1 PDB: 1ak5_A* 1me7_A* 1me9_A* 1meh_A* 1mei_A* 1mew_A* 1pvn_A* 1lrt_A* Length = 503 | Back alignment and structure |
|---|
Score = 43.7 bits (104), Expect = 6e-05
Identities = 25/99 (25%), Positives = 36/99 (36%), Gaps = 13/99 (13%)
Query: 222 KLPILVKGVLTAEDARIAVQAGAAGI-------------IVSNHGARQLDYVPATIMALE 268
K+ + ++ E R AGA I G Q V +
Sbjct: 284 KVKVGAGNIVDGEGFRYLADAGADFIKIGIGGGSICITREQKGIGRGQATAVIDVVAERN 343
Query: 269 EVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFIGR 307
+ + T IPV DGG+ + ALA+GA I +GR
Sbjct: 344 KYFEETGIYIPVCSDGGIVYDYHMTLALAMGADFIMLGR 382
|
| >3jr2_A Hexulose-6-phosphate synthase SGBH; 3-keto-L-gulonate-6-phosphate decarboxylase, ULAD, niaid,CSG bound, biosynthetic protein; HET: MSE; 1.80A {Vibrio cholerae} PDB: 3ieb_A* Length = 218 | Back alignment and structure |
|---|
Score = 42.6 bits (100), Expect = 7e-05
Identities = 20/109 (18%), Positives = 43/109 (39%), Gaps = 4/109 (3%)
Query: 222 KLPILVKGVLTAEDARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVF 281
++ I + G T +DA+ V G I +L + T L+++ + + I +
Sbjct: 111 EIQIEIYGNWTMQDAKAWVDLGITQAIYHRSRDAELAGIGWTTDDLDKMRQLSALGIELS 170
Query: 282 LDGGVRRGTDVFKALALGASGIFIGRPVVYSLAAEGEKGVRRVLEMLRE 330
+ GG+ ++ + GR + AEG++ + E +
Sbjct: 171 ITGGIVPED-IYLFEGIKTKTFIAGRALA---GAEGQQTAAALREQIDR 215
|
| >3bw2_A 2-nitropropane dioxygenase; TIM barrel, oxidoreductase; HET: FMN; 2.10A {Streptomyces ansochromogenes} PDB: 3bw4_A* 3bw3_A* Length = 369 | Back alignment and structure |
|---|
Score = 43.5 bits (103), Expect = 7e-05
Identities = 25/88 (28%), Positives = 36/88 (40%), Gaps = 13/88 (14%)
Query: 230 VLTAEDARIAVQAGAAGIIVSNHGA----------RQLDYVPATIMAL-EEVVKATQGRI 278
T E+AR AGA +I A + D +++L +V +A I
Sbjct: 152 ATTPEEARAVEAAGADAVIAQGVEAGGHQGTHRDSSEDDGAGIGLLSLLAQVREAV--DI 209
Query: 279 PVFLDGGVRRGTDVFKALALGASGIFIG 306
PV GG+ RG + LA GA +G
Sbjct: 210 PVVAAGGIMRGGQIAAVLAAGADAAQLG 237
|
| >3usb_A Inosine-5'-monophosphate dehydrogenase; structural genomics, center for structural genomics of infec diseases, csgid, TIM barrel, CBS-domain; HET: MSE IMP; 2.38A {Bacillus anthracis} PDB: 3tsd_A* 3tsb_A* Length = 511 | Back alignment and structure |
|---|
Score = 43.3 bits (103), Expect = 1e-04
Identities = 27/99 (27%), Positives = 43/99 (43%), Gaps = 21/99 (21%)
Query: 222 KLPILVKGVLTAEDARIAVQAGAAGI-------------IVSNHGARQLDYVPATIMALE 268
L I+ V TAE + ++AGA + +V+ G Q + A+
Sbjct: 297 SLNIIAGNVATAEATKALIEAGANVVKVGIGPGSICTTRVVAGVGVPQ-------LTAVY 349
Query: 269 EVVKATQGR-IPVFLDGGVRRGTDVFKALALGASGIFIG 306
+ + IPV DGG++ D+ KALA GA + +G
Sbjct: 350 DCATEARKHGIPVIADGGIKYSGDMVKALAAGAHVVMLG 388
|
| >1vrd_A Inosine-5'-monophosphate dehydrogenase; TM1347, structural G joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.18A {Thermotoga maritima} SCOP: c.1.5.1 Length = 494 | Back alignment and structure |
|---|
Score = 43.2 bits (103), Expect = 1e-04
Identities = 26/99 (26%), Positives = 43/99 (43%), Gaps = 21/99 (21%)
Query: 222 KLPILVKGVLTAEDARIAVQAGAAGI-------------IVSNHGARQLDYVPATIMALE 268
LP++ V T E ++AGA + +V+ G Q + A+
Sbjct: 278 DLPVVAGNVATPEGTEALIKAGADAVKVGVGPGSICTTRVVAGVGVPQ-------LTAVM 330
Query: 269 EVVKATQGR-IPVFLDGGVRRGTDVFKALALGASGIFIG 306
E + + +P+ DGG+R D+ KALA GA + +G
Sbjct: 331 ECSEVARKYDVPIIADGGIRYSGDIVKALAAGAESVMVG 369
|
| >3q58_A N-acetylmannosamine-6-phosphate 2-epimerase; TIM beta/alpha barrel, ribulose-phosphate binding barrel, carbohydrate metabolic process; HET: BTB; 1.80A {Salmonella enterica subsp} Length = 229 | Back alignment and structure |
|---|
Score = 42.3 bits (99), Expect = 1e-04
Identities = 12/82 (14%), Positives = 23/82 (28%), Gaps = 2/82 (2%)
Query: 225 ILVKGVLTAEDARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDG 284
+ + T + Q G I + G +A+ + V +G
Sbjct: 131 LAMADCSTVNEGISCHQKGIEFIGTTLSGYTGPITPVEPDLAMVTQLSHAG--CRVIAEG 188
Query: 285 GVRRGTDVFKALALGASGIFIG 306
A+ GA + +G
Sbjct: 189 RYNTPALAANAIEHGAWAVTVG 210
|
| >1ypf_A GMP reductase; GUAC, purines, pyrimidines, nucleosides, nucleotides, nucleo nucleoside interconversions, spine, structural genomics; 1.80A {Bacillus anthracis} PDB: 2a1y_A* Length = 336 | Back alignment and structure |
|---|
Score = 42.6 bits (101), Expect = 1e-04
Identities = 27/99 (27%), Positives = 38/99 (38%), Gaps = 22/99 (22%)
Query: 222 KLPILVKGVLTAEDARIAVQAGA----AGI---------IVSNHGARQLDYVPAT-IMAL 267
+ ++ V T E R AGA GI I + G + AL
Sbjct: 149 ESFVIAGNVGTPEAVRELENAGADATKVGIGPGKVCITKIKTGFG------TGGWQLAAL 202
Query: 268 EEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFIG 306
KA P+ DGG+R DV K++ GA+ + IG
Sbjct: 203 RWCAKAA--SKPIIADGGIRTNGDVAKSIRFGATMVMIG 239
|
| >4fxs_A Inosine-5'-monophosphate dehydrogenase; structural genomics, IMPDH, IMP, mycophenolic acid, MOA; HET: IMP MOA; 2.24A {Vibrio cholerae o1 biovar el tor} Length = 496 | Back alignment and structure |
|---|
Score = 42.9 bits (102), Expect = 1e-04
Identities = 31/99 (31%), Positives = 44/99 (44%), Gaps = 21/99 (21%)
Query: 222 KLPILVKGVLTAEDARIAVQAGAAGI-------------IVSNHGARQLDYVPATIMALE 268
L I+ V TAE AR ++AG + + IV+ G Q I A+
Sbjct: 272 HLEIIGGNVATAEGARALIEAGVSAVKVGIGPGSICTTRIVTGVGVPQ-------ITAIA 324
Query: 269 EVVKATQGR-IPVFLDGGVRRGTDVFKALALGASGIFIG 306
+ IPV DGG+R D+ KA+A GAS + +G
Sbjct: 325 DAAGVANEYGIPVIADGGIRFSGDISKAIAAGASCVMVG 363
|
| >1y0e_A Putative N-acetylmannosamine-6-phosphate 2-epimer; mannac-6-P epimerase, NANE, structural genomics, protein STR initiative, PSI; 1.95A {Staphylococcus aureus subsp} SCOP: c.1.2.5 Length = 223 | Back alignment and structure |
|---|
Score = 41.9 bits (98), Expect = 1e-04
Identities = 19/87 (21%), Positives = 35/87 (40%), Gaps = 8/87 (9%)
Query: 225 ILVKGVLTAEDARIAVQAGAAGIIVSNHG-----ARQLDYVPATIMALEEVVKATQGRIP 279
++ + T E+A+ A + G I + HG QL Y L++V+++
Sbjct: 121 EIMADIATVEEAKNAARLGFDYIGTTLHGYTSYTQGQLLYQND-FQFLKDVLQSVD--AK 177
Query: 280 VFLDGGVRRGTDVFKALALGASGIFIG 306
V +G V + + LG +G
Sbjct: 178 VIAEGNVITPDMYKRVMDLGVHCSVVG 204
|
| >2gjl_A Hypothetical protein PA1024; 2-nitropropane dioxygenase, 2-nitropropane, FMN, oxidoreduct; HET: FMN; 2.00A {Pseudomonas aeruginosa PAO1} PDB: 2gjn_A* Length = 328 | Back alignment and structure |
|---|
Score = 42.3 bits (100), Expect = 1e-04
Identities = 20/80 (25%), Positives = 30/80 (37%), Gaps = 6/80 (7%)
Query: 230 VLTAEDARIAVQAGAAGIIVSNH---GARQLDYVPATIMALEEVVKATQGRIPVFLDGGV 286
A A + G + + G D +P ++ L R+P+ GG
Sbjct: 125 CTAVRHALKAERLGVDAVSIDGFECAGHPGEDDIPGLVL-LPAAANRL--RVPIIASGGF 181
Query: 287 RRGTDVFKALALGASGIFIG 306
G + ALALGA I +G
Sbjct: 182 ADGRGLVAALALGADAINMG 201
|
| >1zfj_A Inosine monophosphate dehydrogenase; IMPDH, CBS domains, oxidoreductase; HET: IMP; 1.90A {Streptococcus pyogenes} SCOP: c.1.5.1 d.37.1.1 Length = 491 | Back alignment and structure |
|---|
Score = 42.5 bits (101), Expect = 1e-04
Identities = 21/99 (21%), Positives = 38/99 (38%), Gaps = 21/99 (21%)
Query: 222 KLPILVKGVLTAEDARIAVQAGAAGI-------------IVSNHGARQLDYVPATIMALE 268
++ + TAE AR AG + +V+ G Q + A+
Sbjct: 274 NRTLIAGNIATAEGARALYDAGVDVVKVGIGPGSICTTRVVAGVGVPQ-------VTAIY 326
Query: 269 EVVKATQGR-IPVFLDGGVRRGTDVFKALALGASGIFIG 306
+ + + DGG++ D+ KALA G + + +G
Sbjct: 327 DAAAVAREYGKTIIADGGIKYSGDIVKALAAGGNAVMLG 365
|
| >1jub_A Dihydroorotate dehydrogenase A; homodimer, alpha-beta barrel, flavoprotein, mutant enzyme, oxidoreductase; HET: FMN; 1.40A {Lactococcus lactis} SCOP: c.1.4.1 PDB: 1ovd_A* 1jue_A* 1dor_A* 2bsl_A* 2bx7_A* 2dor_A* 1jqv_A* 1jrb_A* 1jrc_A* 1jqx_A* Length = 311 | Back alignment and structure |
|---|
Score = 42.2 bits (100), Expect = 2e-04
Identities = 32/165 (19%), Positives = 49/165 (29%), Gaps = 41/165 (24%)
Query: 215 KWLQTITKLPILVKGVLT--------AEDARIAVQAGAAGIIVSNHGA---------RQL 257
K + T P+ VK L A I Q + N +
Sbjct: 151 KEVFTFFTKPLGVK--LPPYFDLVHFDIMAEILNQFPLTYVNSVNSIGNGLFIDPEAESV 208
Query: 258 DYVPATIM-----------ALE---EVVKATQGRIPVFLDGGVRRGTDVFKALALGASGI 303
P AL + I + GG+ G D F+ L GA+ +
Sbjct: 209 VIKPKDGFGGIGGAYIKPTALANVRAFYTRLKPEIQIIGTGGIETGQDAFEHLLCGATML 268
Query: 304 FIGRPVVYSLAAEGEKGVRRVLEMLREEFELAMALSGCRSLKEIT 348
IG + EG R++ +E E M G +S+ +
Sbjct: 269 QIGTALHK----EGPAIFDRII----KELEEIMNQKGYQSIADFH 305
|
| >2z6i_A Trans-2-enoyl-ACP reductase II; fatty acid synthesis, antibiotics, oxidoreductase, flavoprotein; HET: FMN; 1.70A {Streptococcus pneumoniae} PDB: 2z6j_A* Length = 332 | Back alignment and structure |
|---|
Score = 41.5 bits (98), Expect = 3e-04
Identities = 17/78 (21%), Positives = 29/78 (37%), Gaps = 4/78 (5%)
Query: 230 VLTAEDARIAVQAGAAGIIVSNH-GARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRR 288
V + A+ + GA +I + + + + +V A IPV GG+
Sbjct: 117 VPSVALAKRMEKIGADAVIAEGMEAGGHIGKLTTMTL-VRQVATAI--SIPVIAAGGIAD 173
Query: 289 GTDVFKALALGASGIFIG 306
G LGA + +G
Sbjct: 174 GEGAAAGFMLGAEAVQVG 191
|
| >3bo9_A Putative nitroalkan dioxygenase; TM0800, structural genomics center for structural genomics, JCSG, protein structure INI PSI-2; HET: MSE 2PE; 2.71A {Thermotoga maritima MSB8} Length = 326 | Back alignment and structure |
|---|
Score = 40.7 bits (96), Expect = 4e-04
Identities = 23/83 (27%), Positives = 34/83 (40%), Gaps = 14/83 (16%)
Query: 230 VLTAEDARIAVQAGAAGIIVSN-----HGARQLDYVPATIMAL-EEVVKATQGRIPVFLD 283
V + AR+ +AGA +I H T L +V ++ IPV
Sbjct: 131 VASDSLARMVERAGADAVIAEGMESGGHIG------EVTTFVLVNKVSRSV--NIPVIAA 182
Query: 284 GGVRRGTDVFKALALGASGIFIG 306
GG+ G + A ALGA + +G
Sbjct: 183 GGIADGRGMAAAFALGAEAVQMG 205
|
| >2cu0_A Inosine-5'-monophosphate dehydrogenase; structural genomics, pyrococcus horikoshii OT3, riken structural genomics/PROT initiative, RSGI; HET: XMP; 2.10A {Pyrococcus horikoshii} SCOP: c.1.5.1 Length = 486 | Back alignment and structure |
|---|
Score = 40.6 bits (96), Expect = 6e-04
Identities = 26/104 (25%), Positives = 39/104 (37%), Gaps = 19/104 (18%)
Query: 215 KWLQTITKLPILVKGVLTAEDARIAVQAGAA--GI---------IVSNHGARQLDYVPAT 263
K ++ +V + + A A GI IV+ G Q
Sbjct: 261 KEMRQKVDADFIVGNIANPKAVDDLTFADAVKVGIGPGSICTTRIVAGVGVPQ------- 313
Query: 264 IMALEEVVKATQGR-IPVFLDGGVRRGTDVFKALALGASGIFIG 306
I A+ V Q + V DGG+R D+ KA+A GA + +G
Sbjct: 314 ITAVAMVADRAQEYGLYVIADGGIRYSGDIVKAIAAGADAVMLG 357
|
Structure Templates Detected by HHsearch
Original result of HHsearch against PDB70 database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 367 | |||
| 3sgz_A | 352 | Hydroxyacid oxidase 2; flavoprotein, homology, INH | 100.0 | |
| 2nzl_A | 392 | Hydroxyacid oxidase 1; HAOX1, glycolate oxidase, G | 100.0 | |
| 2nli_A | 368 | Lactate oxidase; flavoenzyme, FMN, D-lactate, oxid | 100.0 | |
| 1gox_A | 370 | (S)-2-hydroxy-acid oxidase, peroxisomal; oxidoredu | 100.0 | |
| 1kbi_A | 511 | Cytochrome B2, L-LCR; flavocytochrome B2, electron | 100.0 | |
| 1p4c_A | 380 | L(+)-mandelate dehydrogenase; TIM barrel, hydroxy | 100.0 | |
| 3sr7_A | 365 | Isopentenyl-diphosphate delta-isomerase; isopenten | 100.0 | |
| 1vcf_A | 332 | Isopentenyl-diphosphate delta-isomerase; TIM barre | 100.0 | |
| 1p0k_A | 349 | Isopentenyl-diphosphate delta-isomerase; terpene b | 100.0 | |
| 3vkj_A | 368 | Isopentenyl-diphosphate delta-isomerase; type 2 is | 100.0 | |
| 2qr6_A | 393 | IMP dehydrogenase/GMP reductase; NP_599840.1, G re | 100.0 | |
| 1ypf_A | 336 | GMP reductase; GUAC, purines, pyrimidines, nucleos | 100.0 | |
| 3r2g_A | 361 | Inosine 5'-monophosphate dehydrogenase; structural | 100.0 | |
| 2c6q_A | 351 | GMP reductase 2; TIM barrel, metal-binding, NADP, | 100.0 | |
| 1eep_A | 404 | Inosine 5'-monophosphate dehydrogenase; alpha-beta | 99.97 | |
| 2e6f_A | 314 | Dihydroorotate dehydrogenase; chagas disease, pyri | 99.93 | |
| 3khj_A | 361 | Inosine-5-monophosphate dehydrogenase; enzyme-inhi | 99.93 | |
| 1jub_A | 311 | Dihydroorotate dehydrogenase A; homodimer, alpha-b | 99.92 | |
| 1gte_A | 1025 | Dihydropyrimidine dehydrogenase; electron transfer | 99.92 | |
| 1ea0_A | 1479 | Glutamate synthase [NADPH] large chain; oxidoreduc | 99.92 | |
| 4ef8_A | 354 | Dihydroorotate dehydrogenase; phenyl isothiocyanat | 99.91 | |
| 1ofd_A | 1520 | Ferredoxin-dependent glutamate synthase 2; oxidore | 99.9 | |
| 1vhn_A | 318 | Putative flavin oxidoreducatase; structural genomi | 99.9 | |
| 3ffs_A | 400 | Inosine-5-monophosphate dehydrogenase; beta-alpha | 99.9 | |
| 4fo4_A | 366 | Inosine 5'-monophosphate dehydrogenase; structural | 99.9 | |
| 1ep3_A | 311 | Dihydroorotate dehydrogenase B (PYRD subunit); het | 99.89 | |
| 3oix_A | 345 | Putative dihydroorotate dehydrogenase; dihydrooro | 99.89 | |
| 3i65_A | 415 | Dihydroorotate dehydrogenase homolog, mitochondria | 99.89 | |
| 3zwt_A | 367 | Dihydroorotate dehydrogenase (quinone), mitochond; | 99.89 | |
| 1f76_A | 336 | Dihydroorotate dehydrogenase; monomer, alpha-beta- | 99.88 | |
| 1tv5_A | 443 | Dhodehase, dihydroorotate dehydrogenase homolog, m | 99.87 | |
| 1me8_A | 503 | Inosine-5'-monophosphate dehydrogenase; alpha beta | 99.86 | |
| 4af0_A | 556 | Inosine-5'-monophosphate dehydrogenase; oxidoreduc | 99.85 | |
| 3tjx_A | 354 | Dihydroorotate dehydrogenase; PYRD, dhodh, lmdhodh | 99.84 | |
| 3b0p_A | 350 | TRNA-dihydrouridine synthase; TIM barrel, oxidored | 99.84 | |
| 3usb_A | 511 | Inosine-5'-monophosphate dehydrogenase; structural | 99.84 | |
| 4avf_A | 490 | Inosine-5'-monophosphate dehydrogenase; oxidoreduc | 99.83 | |
| 1vrd_A | 494 | Inosine-5'-monophosphate dehydrogenase; TM1347, st | 99.82 | |
| 4fxs_A | 496 | Inosine-5'-monophosphate dehydrogenase; structural | 99.81 | |
| 1zfj_A | 491 | Inosine monophosphate dehydrogenase; IMPDH, CBS do | 99.77 | |
| 1jcn_A | 514 | Inosine monophosphate dehydrogenase I; IMPD, IMPDH | 99.76 | |
| 2cu0_A | 486 | Inosine-5'-monophosphate dehydrogenase; structural | 99.75 | |
| 2z6i_A | 332 | Trans-2-enoyl-ACP reductase II; fatty acid synthes | 99.72 | |
| 2gjl_A | 328 | Hypothetical protein PA1024; 2-nitropropane dioxyg | 99.72 | |
| 3bo9_A | 326 | Putative nitroalkan dioxygenase; TM0800, structura | 99.71 | |
| 3bw2_A | 369 | 2-nitropropane dioxygenase; TIM barrel, oxidoreduc | 99.63 | |
| 1z41_A | 338 | YQJM, probable NADH-dependent flavin oxidoreductas | 99.59 | |
| 2gou_A | 365 | Oxidoreductase, FMN-binding; OLD yeallow enzyme, f | 99.48 | |
| 2r14_A | 377 | Morphinone reductase; H-tunnelling, flavoprotein, | 99.46 | |
| 1vyr_A | 364 | Pentaerythritol tetranitrate reductase; oxidoreduc | 99.46 | |
| 3gr7_A | 340 | NADPH dehydrogenase; flavin, FMN, beta-alpha-barre | 99.45 | |
| 2hsa_B | 402 | 12-oxophytodienoate reductase 3; alpha beta 8 barr | 99.39 | |
| 2uva_G | 2060 | Fatty acid synthase beta subunits; fungal, dehydra | 99.38 | |
| 3hgj_A | 349 | Chromate reductase; TIM barrel, oxidoreductase; HE | 99.36 | |
| 1icp_A | 376 | OPR1, 12-oxophytodienoate reductase 1; beta-alpha- | 99.35 | |
| 3l5a_A | 419 | NADH/flavin oxidoreductase/NADH oxidase; OLD yello | 99.29 | |
| 3kru_A | 343 | NADH:flavin oxidoreductase/NADH oxidase; homotetra | 99.29 | |
| 1ps9_A | 671 | 2,4-dienoyl-COA reductase; iron-sulfur, TIM barrel | 99.27 | |
| 3l5l_A | 363 | Xenobiotic reductase A; TIM barrel, oxidoreductase | 99.22 | |
| 1o94_A | 729 | Tmadh, trimethylamine dehydrogenase; electron tran | 99.21 | |
| 3k30_A | 690 | Histamine dehydrogenase; 6-S-cysteinyl-FMN, ADP bi | 99.19 | |
| 1y0e_A | 223 | Putative N-acetylmannosamine-6-phosphate 2-epimer; | 99.16 | |
| 3gka_A | 361 | N-ethylmaleimide reductase; decode biostructures, | 99.16 | |
| 4ab4_A | 362 | Xenobiotic reductase B; oxidoreductase, OLD yellow | 99.15 | |
| 3igs_A | 232 | N-acetylmannosamine-6-phosphate 2-epimerase 2; ene | 99.15 | |
| 3q58_A | 229 | N-acetylmannosamine-6-phosphate 2-epimerase; TIM b | 99.14 | |
| 1xm3_A | 264 | Thiazole biosynthesis protein THIG; structural gen | 99.12 | |
| 1mzh_A | 225 | Deoxyribose-phosphate aldolase; alpha-beta barrel, | 99.04 | |
| 2uv8_G | 2051 | Fatty acid synthase subunit beta (FAS1); fatty aci | 98.95 | |
| 1wv2_A | 265 | Thiazole moeity, thiazole biosynthesis protein THI | 98.93 | |
| 3zen_D | 3089 | Fatty acid synthase; transferase, mycolic acid bio | 98.75 | |
| 3aty_A | 379 | Tcoye, prostaglandin F2A synthase; alpha/beta barr | 98.72 | |
| 1wa3_A | 205 | 2-keto-3-deoxy-6-phosphogluconate aldolase; KDPG, | 98.71 | |
| 4adt_A | 297 | Pyridoxine biosynthetic enzyme PDX1 homologue, PU; | 98.67 | |
| 3tsm_A | 272 | IGPS, indole-3-glycerol phosphate synthase; struct | 98.66 | |
| 1qop_A | 268 | Tryptophan synthase alpha chain; lyase, carbon-oxy | 98.62 | |
| 3qja_A | 272 | IGPS, indole-3-glycerol phosphate synthase; struct | 98.62 | |
| 1yxy_A | 234 | Putative N-acetylmannosamine-6-phosphate 2-epimer; | 98.59 | |
| 2qjg_A | 273 | Putative aldolase MJ0400; beta-alpha barrel, lyase | 98.59 | |
| 2zbt_A | 297 | Pyridoxal biosynthesis lyase PDXS; pyridoxine bios | 98.58 | |
| 3nav_A | 271 | Tryptophan synthase alpha chain; alpha subunit, st | 98.57 | |
| 2yzr_A | 330 | Pyridoxal biosynthesis lyase PDXS; redox protein, | 98.54 | |
| 4a3u_A | 358 | NCR, NADH\:flavin oxidoreductase/NADH oxidase; HET | 98.51 | |
| 2v82_A | 212 | 2-dehydro-3-deoxy-6-phosphogalactonate aldolase; l | 98.51 | |
| 2nv1_A | 305 | Pyridoxal biosynthesis lyase PDXS; (beta/alpha)8-b | 98.5 | |
| 3o07_A | 291 | Pyridoxine biosynthesis protein SNZ1; (beta/alpha) | 98.49 | |
| 3oa3_A | 288 | Aldolase; structural genomics, seattle structural | 98.49 | |
| 3vnd_A | 267 | TSA, tryptophan synthase alpha chain; psychrophili | 98.47 | |
| 1ka9_F | 252 | Imidazole glycerol phosphtate synthase; riken stru | 98.45 | |
| 1rd5_A | 262 | Tryptophan synthase alpha chain, chloroplast; hydr | 98.44 | |
| 1yad_A | 221 | Regulatory protein TENI; TIM barrel, transcription | 98.44 | |
| 1h5y_A | 253 | HISF; histidine biosynthesis, TIM-barrel; 2.0A {Py | 98.43 | |
| 1geq_A | 248 | Tryptophan synthase alpha-subunit; hyperthermophIl | 98.41 | |
| 2ekc_A | 262 | AQ_1548, tryptophan synthase alpha chain; structur | 98.4 | |
| 3ngj_A | 239 | Deoxyribose-phosphate aldolase; lyase, structural | 98.38 | |
| 1thf_D | 253 | HISF protein; thermophIle, TIM-barrel, histidine b | 98.38 | |
| 3f4w_A | 211 | Putative hexulose 6 phosphate synthase; humps, mal | 98.36 | |
| 2htm_A | 268 | Thiazole biosynthesis protein THIG; thiamin biosyn | 98.35 | |
| 2y88_A | 244 | Phosphoribosyl isomerase A; aromatic amino acid bi | 98.34 | |
| 3tjl_A | 407 | NADPH dehydrogenase; OLD yellow enzyme, flavin mon | 98.33 | |
| 2w6r_A | 266 | Imidazole glycerol phosphate synthase subunit HISF | 98.32 | |
| 1jvn_A | 555 | Glutamine, bifunctional histidine biosynthesis pro | 98.31 | |
| 1qo2_A | 241 | Molecule: N-((5-phosphoribosyl)-formimino)-5-amino | 98.3 | |
| 1vc4_A | 254 | Indole-3-glycerol phosphate synthase; lyase, trypt | 98.29 | |
| 1vzw_A | 244 | Phosphoribosyl isomerase A; histidine biosynthesis | 98.27 | |
| 3r12_A | 260 | Deoxyribose-phosphate aldolase; TIM beta/alpha-bar | 98.26 | |
| 2p10_A | 286 | MLL9387 protein; putative phosphonopyruvate hydrol | 98.26 | |
| 1pii_A | 452 | N-(5'phosphoribosyl)anthranilate isomerase; bifunc | 98.24 | |
| 3ndo_A | 231 | Deoxyribose-phosphate aldolase; ssgcid, NIH, niaid | 98.24 | |
| 1ub3_A | 220 | Aldolase protein; schiff base, deoxyribose phospha | 98.22 | |
| 2yw3_A | 207 | 4-hydroxy-2-oxoglutarate aldolase/2-deydro-3- deox | 98.22 | |
| 2tps_A | 227 | Protein (thiamin phosphate synthase); thiamin bios | 98.19 | |
| 3tdn_A | 247 | FLR symmetric alpha-beta TIM barrel; symmetric sup | 98.19 | |
| 3o63_A | 243 | Probable thiamine-phosphate pyrophosphorylase; thi | 98.18 | |
| 4e38_A | 232 | Keto-hydroxyglutarate-aldolase/keto-deoxy-phospho | 98.16 | |
| 4a29_A | 258 | Engineered retro-aldol enzyme RA95.0; de novo prot | 98.14 | |
| 1xi3_A | 215 | Thiamine phosphate pyrophosphorylase; structural g | 98.13 | |
| 2agk_A | 260 | 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino) me | 98.09 | |
| 3ovp_A | 228 | Ribulose-phosphate 3-epimerase; iron binding, isom | 98.08 | |
| 3tdn_A | 247 | FLR symmetric alpha-beta TIM barrel; symmetric sup | 98.08 | |
| 1h1y_A | 228 | D-ribulose-5-phosphate 3-epimerase; oxidative pent | 98.06 | |
| 4gbu_A | 400 | NADPH dehydrogenase 1; alpha/beta barrel, enenone | 98.03 | |
| 3jr2_A | 218 | Hexulose-6-phosphate synthase SGBH; 3-keto-L-gulon | 97.99 | |
| 1i4n_A | 251 | Indole-3-glycerol phosphate synthase; thermostable | 97.97 | |
| 3tha_A | 252 | Tryptophan synthase alpha chain; structural genomi | 97.96 | |
| 1ujp_A | 271 | Tryptophan synthase alpha chain; riken structural | 97.96 | |
| 1ka9_F | 252 | Imidazole glycerol phosphtate synthase; riken stru | 97.88 | |
| 1thf_D | 253 | HISF protein; thermophIle, TIM-barrel, histidine b | 97.87 | |
| 3inp_A | 246 | D-ribulose-phosphate 3-epimerase; IDP02542, isomer | 97.87 | |
| 1rpx_A | 230 | Protein (ribulose-phosphate 3-epimerase); chloropl | 97.85 | |
| 1w8s_A | 263 | FBP aldolase, fructose-bisphosphate aldolase class | 97.85 | |
| 1h5y_A | 253 | HISF; histidine biosynthesis, TIM-barrel; 2.0A {Py | 97.84 | |
| 2fli_A | 220 | Ribulose-phosphate 3-epimerase; (beta/alpha)8-barr | 97.8 | |
| 1vhc_A | 224 | Putative KHG/KDPG aldolase; structural genomics, u | 97.79 | |
| 1wbh_A | 214 | KHG/KDPG aldolase; lyase; 1.55A {Escherichia coli} | 97.76 | |
| 2y88_A | 244 | Phosphoribosyl isomerase A; aromatic amino acid bi | 97.7 | |
| 3glc_A | 295 | Aldolase LSRF; TIM barrel, lyase, schiff base; HET | 97.69 | |
| 3vk5_A | 286 | MOEO5; TIM barrel, transferase; HET: FPQ; 1.39A {S | 97.69 | |
| 3lab_A | 217 | Putative KDPG (2-keto-3-deoxy-6-phosphogluconate) | 97.66 | |
| 1qo2_A | 241 | Molecule: N-((5-phosphoribosyl)-formimino)-5-amino | 97.66 | |
| 3s1x_A | 223 | Probable transaldolase; alpha-beta barrel, conform | 97.63 | |
| 1vcv_A | 226 | Probable deoxyribose-phosphate aldolase; DERA, hyp | 97.63 | |
| 1qap_A | 296 | Quinolinic acid phosphoribosyltransferase; glycosy | 97.62 | |
| 1vzw_A | 244 | Phosphoribosyl isomerase A; histidine biosynthesis | 97.61 | |
| 2w6r_A | 266 | Imidazole glycerol phosphate synthase subunit HISF | 97.59 | |
| 3ajx_A | 207 | 3-hexulose-6-phosphate synthase; HPS, OMPDC supraf | 97.59 | |
| 1mxs_A | 225 | KDPG aldolase; 2-keto-3-deoxy-6-phosphogluconate a | 97.59 | |
| 1tqj_A | 230 | Ribulose-phosphate 3-epimerase; beta-alpha barrel | 97.58 | |
| 3vzx_A | 228 | Heptaprenylglyceryl phosphate synthase; biosynthes | 97.58 | |
| 1ypf_A | 336 | GMP reductase; GUAC, purines, pyrimidines, nucleos | 97.57 | |
| 1n7k_A | 234 | Deoxyribose-phosphate aldolase; A.pernix, tetramer | 97.57 | |
| 3r8r_A | 212 | Transaldolase; pentose phosphate pathway, schiff b | 97.56 | |
| 3ceu_A | 210 | Thiamine phosphate pyrophosphorylase; TIM barrel-l | 97.56 | |
| 3lab_A | 217 | Putative KDPG (2-keto-3-deoxy-6-phosphogluconate) | 97.54 | |
| 2b7n_A | 273 | Probable nicotinate-nucleotide pyrophosphorylase; | 97.51 | |
| 2a4a_A | 281 | Deoxyribose-phosphate aldolase; lyase, TIM beta/al | 97.5 | |
| 1x1o_A | 286 | Nicotinate-nucleotide pyrophosphorylase; transfera | 97.49 | |
| 3cwo_X | 237 | Beta/alpha-barrel protein based on 1THF and 1TMY; | 97.46 | |
| 1p1x_A | 260 | Deoxyribose-phosphate aldolase; alpha-beta barrel, | 97.44 | |
| 3tqv_A | 287 | Nicotinate-nucleotide pyrophosphorylase; glycosylt | 97.34 | |
| 2jbm_A | 299 | Nicotinate-nucleotide pyrophosphorylase; NAD, enzy | 97.3 | |
| 3kts_A | 192 | Glycerol uptake operon antiterminator regulatory; | 97.29 | |
| 2qr6_A | 393 | IMP dehydrogenase/GMP reductase; NP_599840.1, G re | 97.25 | |
| 2czd_A | 208 | Orotidine 5'-phosphate decarboxylase; pyrimidine b | 97.23 | |
| 2f6u_A | 234 | GGGPS, (S)-3-O-geranylgeranylglyceryl phosphate sy | 97.22 | |
| 3exr_A | 221 | RMPD (hexulose-6-phosphate synthase); beta barrel, | 97.17 | |
| 1jcn_A | 514 | Inosine monophosphate dehydrogenase I; IMPD, IMPDH | 97.09 | |
| 1viz_A | 240 | PCRB protein homolog; structural genomics, unknown | 97.07 | |
| 3c2e_A | 294 | Nicotinate-nucleotide pyrophosphorylase; qprtase, | 97.07 | |
| 1tqx_A | 227 | D-ribulose-5-phosphate 3-epimerase, putative; stru | 97.06 | |
| 1vpx_A | 230 | Protein (transaldolase (EC 2.2.1.2)); TM0295, stru | 97.06 | |
| 3l0g_A | 300 | Nicotinate-nucleotide pyrophosphorylase; ssgcid, N | 97.04 | |
| 3gnn_A | 298 | Nicotinate-nucleotide pyrophosphorylase; decode bi | 97.0 | |
| 1o4u_A | 285 | Type II quinolic acid phosphoribosyltransferase; s | 97.0 | |
| 3paj_A | 320 | Nicotinate-nucleotide pyrophosphorylase, carboxyl; | 96.97 | |
| 1q6o_A | 216 | Humps, 3-keto-L-gulonate 6-phosphate decarboxylase | 96.92 | |
| 3nvt_A | 385 | 3-deoxy-D-arabino-heptulosonate 7-phosphate synth; | 96.92 | |
| 4gj1_A | 243 | 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino) me | 96.89 | |
| 3nl6_A | 540 | Thiamine biosynthetic bifunctional enzyme; thiamin | 96.88 | |
| 3ve9_A | 215 | Orotidine-5'-phosphate decarboxylase; TIM barrel f | 96.87 | |
| 1qpo_A | 284 | Quinolinate acid phosphoribosyl transferase; type | 96.85 | |
| 1xg4_A | 295 | Probable methylisocitrate lyase; 2-methylisocitrat | 96.8 | |
| 1w0m_A | 226 | TIM, triosephosphate isomerase; glycolysis, glucon | 96.77 | |
| 1y0e_A | 223 | Putative N-acetylmannosamine-6-phosphate 2-epimer; | 96.7 | |
| 3o07_A | 291 | Pyridoxine biosynthesis protein SNZ1; (beta/alpha) | 96.65 | |
| 4dbe_A | 222 | Orotidine 5'-phosphate decarboxylase; TIM barrel, | 96.61 | |
| 4gj1_A | 243 | 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino) me | 96.56 | |
| 3cu2_A | 237 | Ribulose-5-phosphate 3-epimerase; YP_718263.1, rib | 96.54 | |
| 1jvn_A | 555 | Glutamine, bifunctional histidine biosynthesis pro | 96.54 | |
| 2yw3_A | 207 | 4-hydroxy-2-oxoglutarate aldolase/2-deydro-3- deox | 96.44 | |
| 3iwp_A | 287 | Copper homeostasis protein CUTC homolog; conserved | 96.38 | |
| 3ctl_A | 231 | D-allulose-6-phosphate 3-epimerase; D-glucitol 6-p | 96.37 | |
| 3w01_A | 235 | Heptaprenylglyceryl phosphate synthase; biosynthes | 96.35 | |
| 4eiv_A | 297 | Deoxyribose-phosphate aldolase; chemotherapy, brai | 96.33 | |
| 3q58_A | 229 | N-acetylmannosamine-6-phosphate 2-epimerase; TIM b | 96.31 | |
| 1l6w_A | 220 | Fructose-6-phosphate aldolase 1; alpha-beta barrel | 96.28 | |
| 2h6r_A | 219 | Triosephosphate isomerase; beta-alpha barrel; 2.30 | 96.27 | |
| 3khj_A | 361 | Inosine-5-monophosphate dehydrogenase; enzyme-inhi | 96.27 | |
| 3igs_A | 232 | N-acetylmannosamine-6-phosphate 2-epimerase 2; ene | 96.21 | |
| 2pgw_A | 384 | Muconate cycloisomerase; enolase superfamily, octa | 96.2 | |
| 1vkf_A | 188 | Glycerol uptake operon antiterminator-related Pro; | 96.15 | |
| 4e38_A | 232 | Keto-hydroxyglutarate-aldolase/keto-deoxy-phospho | 96.14 | |
| 1vc4_A | 254 | Indole-3-glycerol phosphate synthase; lyase, trypt | 95.93 | |
| 1mdl_A | 359 | Mandelate racemase; isomerase, mandelate pathway, | 95.87 | |
| 2agk_A | 260 | 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino) me | 95.83 | |
| 2ovl_A | 371 | Putative racemase; structural genomics, PSI-2, pro | 95.83 | |
| 1zfj_A | 491 | Inosine monophosphate dehydrogenase; IMPDH, CBS do | 95.81 | |
| 2vc6_A | 292 | MOSA, dihydrodipicolinate synthase; DHDPS, TIM bar | 95.81 | |
| 1wx0_A | 223 | Transaldolase; structural genomics, riken structur | 95.8 | |
| 3r2g_A | 361 | Inosine 5'-monophosphate dehydrogenase; structural | 95.75 | |
| 2ehh_A | 294 | DHDPS, dihydrodipicolinate synthase; structural ge | 95.66 | |
| 1to3_A | 304 | Putative aldolase YIHT; beta-alpha barrel, structu | 95.66 | |
| 3daq_A | 292 | DHDPS, dihydrodipicolinate synthase; lysine biosyn | 95.61 | |
| 3cpr_A | 304 | Dihydrodipicolinate synthetase; (beta/alpha)8-barr | 95.53 | |
| 3tak_A | 291 | DHDPS, dihydrodipicolinate synthase; TIM barrel, l | 95.44 | |
| 1yxy_A | 234 | Putative N-acetylmannosamine-6-phosphate 2-epimer; | 95.43 | |
| 3flu_A | 297 | DHDPS, dihydrodipicolinate synthase; TIM barrel, b | 95.4 | |
| 3tsm_A | 272 | IGPS, indole-3-glycerol phosphate synthase; struct | 95.39 | |
| 1vhc_A | 224 | Putative KHG/KDPG aldolase; structural genomics, u | 95.37 | |
| 1xky_A | 301 | Dihydrodipicolinate synthase; TIM barrel, , lysine | 95.35 | |
| 1f6k_A | 293 | N-acetylneuraminate lyase; beta barrel; 1.60A {Hae | 95.33 | |
| 3si9_A | 315 | DHDPS, dihydrodipicolinate synthase; structural ge | 95.3 | |
| 3m47_A | 228 | Orotidine 5'-phosphate decarboxylase; orotidine 5' | 95.3 | |
| 4fo4_A | 366 | Inosine 5'-monophosphate dehydrogenase; structural | 95.3 | |
| 2wkj_A | 303 | N-acetylneuraminate lyase; directed evolution, sia | 95.29 | |
| 1zco_A | 262 | 2-dehydro-3-deoxyphosphoheptonate aldolase; arabin | 95.25 | |
| 3qze_A | 314 | DHDPS, dihydrodipicolinate synthase; alpha beta ba | 95.22 | |
| 2hzg_A | 401 | Mandelate racemase/muconate lactonizing enzyme/EN | 95.22 | |
| 2yxg_A | 289 | DHDPS, dihydrodipicolinate synthase; MJ0244, TIM b | 95.22 | |
| 3l21_A | 304 | DHDPS, dihydrodipicolinate synthase; DAPA, dimer, | 95.22 | |
| 3qja_A | 272 | IGPS, indole-3-glycerol phosphate synthase; struct | 95.19 | |
| 3na8_A | 315 | Putative dihydrodipicolinate synthetase; lyase; HE | 95.15 | |
| 2bdq_A | 224 | Copper homeostasis protein CUTC; alpha beta protei | 95.15 | |
| 3flu_A | 297 | DHDPS, dihydrodipicolinate synthase; TIM barrel, b | 95.15 | |
| 1rvk_A | 382 | Isomerase/lactonizing enzyme; enolase superfamily, | 95.14 | |
| 1xky_A | 301 | Dihydrodipicolinate synthase; TIM barrel, , lysine | 95.12 | |
| 1xm3_A | 264 | Thiazole biosynthesis protein THIG; structural gen | 95.12 | |
| 3tak_A | 291 | DHDPS, dihydrodipicolinate synthase; TIM barrel, l | 95.12 | |
| 1o5k_A | 306 | DHDPS, dihydrodipicolinate synthase; TM1521, struc | 95.11 | |
| 1wbh_A | 214 | KHG/KDPG aldolase; lyase; 1.55A {Escherichia coli} | 95.11 | |
| 2ehh_A | 294 | DHDPS, dihydrodipicolinate synthase; structural ge | 95.11 | |
| 3fkr_A | 309 | L-2-keto-3-deoxyarabonate dehydratase; DHDPS/NAL f | 95.1 | |
| 2r8w_A | 332 | AGR_C_1641P; APC7498, dihydrodipicolinate synthase | 95.1 | |
| 1vr6_A | 350 | Phospho-2-dehydro-3-deoxyheptonate aldolase; TM034 | 95.05 | |
| 2v9d_A | 343 | YAGE; dihydrodipicolinic acid synthase, N-acetyl n | 95.05 | |
| 2rfg_A | 297 | Dihydrodipicolinate synthase; beta barrel, amino-a | 95.05 | |
| 2ojp_A | 292 | DHDPS, dihydrodipicolinate synthase; dimer, lysine | 95.04 | |
| 3qfe_A | 318 | Putative dihydrodipicolinate synthase family PROT; | 94.94 | |
| 3m5v_A | 301 | DHDPS, dihydrodipicolinate synthase; TIM barrel, c | 94.93 | |
| 3b4u_A | 294 | Dihydrodipicolinate synthase; structural genomics, | 94.9 | |
| 1o5k_A | 306 | DHDPS, dihydrodipicolinate synthase; TM1521, struc | 94.88 | |
| 2vc6_A | 292 | MOSA, dihydrodipicolinate synthase; DHDPS, TIM bar | 94.85 | |
| 4af0_A | 556 | Inosine-5'-monophosphate dehydrogenase; oxidoreduc | 94.84 | |
| 2wqp_A | 349 | Polysialic acid capsule biosynthesis protein SIAC; | 94.8 | |
| 1vs1_A | 276 | 3-deoxy-7-phosphoheptulonate synthase; (beta/alpha | 94.8 | |
| 3e96_A | 316 | Dihydrodipicolinate synthase; structural genomics, | 94.78 | |
| 2rfg_A | 297 | Dihydrodipicolinate synthase; beta barrel, amino-a | 94.74 | |
| 2nql_A | 388 | AGR_PAT_674P, isomerase/lactonizing enzyme; enolas | 94.74 | |
| 2yyu_A | 246 | Orotidine 5'-phosphate decarboxylase; TIM barrel, | 94.72 | |
| 4avf_A | 490 | Inosine-5'-monophosphate dehydrogenase; oxidoreduc | 94.71 | |
| 3s5o_A | 307 | 4-hydroxy-2-oxoglutarate aldolase, mitochondrial; | 94.66 | |
| 1vli_A | 385 | Spore coat polysaccharide biosynthesis protein SP; | 94.65 | |
| 1mxs_A | 225 | KDPG aldolase; 2-keto-3-deoxy-6-phosphogluconate a | 94.64 | |
| 3d0c_A | 314 | Dihydrodipicolinate synthase; lysine biosynthesis, | 94.6 | |
| 1i4n_A | 251 | Indole-3-glycerol phosphate synthase; thermostable | 94.53 | |
| 4fxs_A | 496 | Inosine-5'-monophosphate dehydrogenase; structural | 94.48 | |
| 1nu5_A | 370 | Chloromuconate cycloisomerase; enzyme, dehalogenat | 94.48 | |
| 3ru6_A | 303 | Orotidine 5'-phosphate decarboxylase; structural g | 94.47 | |
| 3ffs_A | 400 | Inosine-5-monophosphate dehydrogenase; beta-alpha | 94.46 | |
| 3si9_A | 315 | DHDPS, dihydrodipicolinate synthase; structural ge | 94.46 | |
| 3h5d_A | 311 | DHDPS, dihydrodipicolinate synthase; lysine biosyn | 94.46 | |
| 3h5d_A | 311 | DHDPS, dihydrodipicolinate synthase; lysine biosyn | 94.4 | |
| 2rdx_A | 379 | Mandelate racemase/muconate lactonizing enzyme, P; | 94.37 | |
| 3eb2_A | 300 | Putative dihydrodipicolinate synthetase; lysine bi | 94.36 | |
| 3daq_A | 292 | DHDPS, dihydrodipicolinate synthase; lysine biosyn | 94.29 | |
| 3iv3_A | 332 | Tagatose 1,6-diphosphate aldolase 2; TIM barrel, p | 94.28 | |
| 3d0c_A | 314 | Dihydrodipicolinate synthase; lysine biosynthesis, | 94.27 | |
| 2qgy_A | 391 | Enolase from the environmental genome shotgun sequ | 94.2 | |
| 2v9d_A | 343 | YAGE; dihydrodipicolinic acid synthase, N-acetyl n | 94.18 | |
| 3ldv_A | 255 | Orotidine 5'-phosphate decarboxylase; structural g | 94.18 | |
| 3dz1_A | 313 | Dihydrodipicolinate synthase; lysine biosynthesis, | 94.15 | |
| 2og9_A | 393 | Mandelate racemase/muconate lactonizing enzyme; NY | 94.13 | |
| 4adt_A | 297 | Pyridoxine biosynthetic enzyme PDX1 homologue, PU; | 94.06 | |
| 3eb2_A | 300 | Putative dihydrodipicolinate synthetase; lysine bi | 94.04 | |
| 4dpp_A | 360 | DHDPS 2, dihydrodipicolinate synthase 2, chloropla | 93.98 | |
| 2ojp_A | 292 | DHDPS, dihydrodipicolinate synthase; dimer, lysine | 93.94 | |
| 3nav_A | 271 | Tryptophan synthase alpha chain; alpha subunit, st | 93.89 | |
| 3ozy_A | 389 | Putative mandelate racemase; beta-alpha barrel, en | 93.85 | |
| 3a5f_A | 291 | Dihydrodipicolinate synthase; TIM barrel, enzyme, | 93.85 | |
| 3tfx_A | 259 | Orotidine 5'-phosphate decarboxylase; PSI-biology, | 93.82 | |
| 3na8_A | 315 | Putative dihydrodipicolinate synthetase; lyase; HE | 93.78 | |
| 2yxg_A | 289 | DHDPS, dihydrodipicolinate synthase; MJ0244, TIM b | 93.76 | |
| 3pm6_A | 306 | Putative fructose-bisphosphate aldolase; structura | 93.73 | |
| 1eix_A | 245 | Orotidine 5'-monophosphate decarboxylase; alpha-be | 93.71 | |
| 1twd_A | 256 | Copper homeostasis protein CUTC; TIM-like protein, | 93.67 | |
| 3b4u_A | 294 | Dihydrodipicolinate synthase; structural genomics, | 93.67 | |
| 1vrd_A | 494 | Inosine-5'-monophosphate dehydrogenase; TM1347, st | 93.66 | |
| 2hmc_A | 344 | AGR_L_411P, dihydrodipicolinate synthase; alpha-be | 93.64 | |
| 3m5v_A | 301 | DHDPS, dihydrodipicolinate synthase; TIM barrel, c | 93.5 | |
| 3a5f_A | 291 | Dihydrodipicolinate synthase; TIM barrel, enzyme, | 93.36 | |
| 3tr2_A | 239 | Orotidine 5'-phosphate decarboxylase; purines, pyr | 93.35 | |
| 3sz8_A | 285 | 2-dehydro-3-deoxyphosphooctonate aldolase 2; ssgci | 93.34 | |
| 3iwp_A | 287 | Copper homeostasis protein CUTC homolog; conserved | 93.33 | |
| 2r8w_A | 332 | AGR_C_1641P; APC7498, dihydrodipicolinate synthase | 93.26 | |
| 1dbt_A | 239 | Orotidine 5'-phosphate decarboxylase; UMP, TIM bar | 93.26 | |
| 2pp0_A | 398 | L-talarate/galactarate dehydratase; enolase superf | 93.22 | |
| 1tkk_A | 366 | Similar to chloromuconate cycloisomerase; epimeras | 93.19 | |
| 1pii_A | 452 | N-(5'phosphoribosyl)anthranilate isomerase; bifunc | 93.18 | |
| 1twd_A | 256 | Copper homeostasis protein CUTC; TIM-like protein, | 93.1 | |
| 1eep_A | 404 | Inosine 5'-monophosphate dehydrogenase; alpha-beta | 93.07 | |
| 3usb_A | 511 | Inosine-5'-monophosphate dehydrogenase; structural | 93.0 | |
| 1hg3_A | 225 | Triosephosphate isomerase; thermostability, tetram | 92.98 | |
| 1geq_A | 248 | Tryptophan synthase alpha-subunit; hyperthermophIl | 92.96 | |
| 1nsj_A | 205 | PRAI, phosphoribosyl anthranilate isomerase; therm | 92.9 | |
| 3cpr_A | 304 | Dihydrodipicolinate synthetase; (beta/alpha)8-barr | 92.8 | |
| 3qze_A | 314 | DHDPS, dihydrodipicolinate synthase; alpha beta ba | 92.79 | |
| 3l21_A | 304 | DHDPS, dihydrodipicolinate synthase; DAPA, dimer, | 92.75 | |
| 2qdd_A | 378 | Mandelate racemase/muconate lactonizing enzyme; en | 92.74 | |
| 2oz8_A | 389 | MLL7089 protein; structural genomics, unknown func | 92.63 | |
| 4dwd_A | 393 | Mandelate racemase/muconate lactonizing enzyme, C | 92.63 | |
| 2p8b_A | 369 | Mandelate racemase/muconate lactonizing enzyme fam | 92.62 | |
| 3q94_A | 288 | Fructose-bisphosphate aldolase, class II; structur | 92.6 | |
| 2zbt_A | 297 | Pyridoxal biosynthesis lyase PDXS; pyridoxine bios | 92.59 | |
| 2c6q_A | 351 | GMP reductase 2; TIM barrel, metal-binding, NADP, | 92.56 | |
| 3eez_A | 378 | Putative mandelate racemase/muconate lactonizing e | 92.53 | |
| 2qde_A | 397 | Mandelate racemase/muconate lactonizing enzyme FA | 92.51 | |
| 2v82_A | 212 | 2-dehydro-3-deoxy-6-phosphogalactonate aldolase; l | 92.3 | |
| 3i4k_A | 383 | Muconate lactonizing enzyme; structural genomics, | 92.25 | |
| 1ea0_A | 1479 | Glutamate synthase [NADPH] large chain; oxidoreduc | 92.09 | |
| 3g8r_A | 350 | Probable spore coat polysaccharide biosynthesis P; | 91.91 | |
| 3stp_A | 412 | Galactonate dehydratase, putative; PSI biology, st | 91.89 | |
| 3rcy_A | 433 | Mandelate racemase/muconate lactonizing enzyme-LI | 91.85 | |
| 1v5x_A | 203 | PRA isomerase, phosphoribosylanthranilate isomeras | 91.78 | |
| 3jva_A | 354 | Dipeptide epimerase; enolase superfamily, isomeras | 91.69 | |
| 1gvf_A | 286 | Tagatose-bisphosphate aldolase AGAY; lyase, zinc.; | 91.66 | |
| 3s5o_A | 307 | 4-hydroxy-2-oxoglutarate aldolase, mitochondrial; | 91.64 | |
| 4e5t_A | 404 | Mandelate racemase / muconate lactonizing enzyme, | 91.58 | |
| 1tzz_A | 392 | Hypothetical protein L1841; structural genomics, m | 91.56 | |
| 2gdq_A | 382 | YITF; mandelate racemase/muconate lactonizing enzy | 91.43 | |
| 3vnd_A | 267 | TSA, tryptophan synthase alpha chain; psychrophili | 91.4 | |
| 1rvg_A | 305 | Fructose-1,6-bisphosphate aldolase; class II aldol | 91.36 | |
| 1wv2_A | 265 | Thiazole moeity, thiazole biosynthesis protein THI | 91.19 | |
| 3sjn_A | 374 | Mandelate racemase/muconate lactonizing protein; e | 91.06 | |
| 1jub_A | 311 | Dihydroorotate dehydrogenase A; homodimer, alpha-b | 91.04 | |
| 1s2w_A | 295 | Phosphoenolpyruvate phosphomutase; phosphonopyruva | 90.89 | |
| 3vav_A | 275 | 3-methyl-2-oxobutanoate hydroxymethyltransferase; | 90.75 | |
| 1qop_A | 268 | Tryptophan synthase alpha chain; lyase, carbon-oxy | 90.75 | |
| 3fkr_A | 309 | L-2-keto-3-deoxyarabonate dehydratase; DHDPS/NAL f | 90.75 | |
| 2r91_A | 286 | 2-keto-3-deoxy-(6-phospho-)gluconate aldolase; TIM | 90.72 | |
| 2bdq_A | 224 | Copper homeostasis protein CUTC; alpha beta protei | 90.65 | |
| 2poz_A | 392 | Putative dehydratase; octamer, structural genomics | 90.6 | |
| 2ps2_A | 371 | Putative mandelate racemase/muconate lactonizing e | 90.51 | |
| 1vqt_A | 213 | Orotidine 5'-phosphate decarboxylase; TM0332, stru | 90.47 | |
| 1z41_A | 338 | YQJM, probable NADH-dependent flavin oxidoreductas | 90.31 | |
| 3zwt_A | 367 | Dihydroorotate dehydrogenase (quinone), mitochond; | 90.2 | |
| 2nv1_A | 305 | Pyridoxal biosynthesis lyase PDXS; (beta/alpha)8-b | 90.12 | |
| 3dz1_A | 313 | Dihydrodipicolinate synthase; lysine biosynthesis, | 90.11 | |
| 2r91_A | 286 | 2-keto-3-deoxy-(6-phospho-)gluconate aldolase; TIM | 90.05 | |
| 2isw_A | 323 | Putative fructose-1,6-bisphosphate aldolase; class | 90.02 | |
| 3n9r_A | 307 | Fructose-bisphosphate aldolase; FBP aldolase, clas | 89.9 | |
| 1vli_A | 385 | Spore coat polysaccharide biosynthesis protein SP; | 89.79 | |
| 4e4u_A | 412 | Mandalate racemase/muconate lactonizing enzyme; ma | 89.75 | |
| 3ih1_A | 305 | Methylisocitrate lyase; alpha-beta structure, TIM- | 89.74 | |
| 1o60_A | 292 | 2-dehydro-3-deoxyphosphooctonate aldolase; structu | 89.71 | |
| 3b0p_A | 350 | TRNA-dihydrouridine synthase; TIM barrel, oxidored | 89.46 | |
| 4aaj_A | 228 | N-(5'-phosphoribosyl)anthranilate isomerase; alpha | 89.44 | |
| 3rr1_A | 405 | GALD, putative D-galactonate dehydratase; enolase, | 89.23 | |
| 3eoo_A | 298 | Methylisocitrate lyase; seattle structural genomic | 89.17 | |
| 2wqp_A | 349 | Polysialic acid capsule biosynthesis protein SIAC; | 89.07 | |
| 3bjs_A | 428 | Mandelate racemase/muconate lactonizing enzyme; en | 89.06 | |
| 1ofd_A | 1520 | Ferredoxin-dependent glutamate synthase 2; oxidore | 88.87 | |
| 3tj4_A | 372 | Mandelate racemase; enolase, dehydratase, enzyme f | 88.65 | |
| 3ih1_A | 305 | Methylisocitrate lyase; alpha-beta structure, TIM- | 88.64 | |
| 1tqj_A | 230 | Ribulose-phosphate 3-epimerase; beta-alpha barrel | 88.61 | |
| 1f76_A | 336 | Dihydroorotate dehydrogenase; monomer, alpha-beta- | 88.5 | |
| 3qfe_A | 318 | Putative dihydrodipicolinate synthase family PROT; | 88.3 | |
| 3ro6_B | 356 | Putative chloromuconate cycloisomerase; TIM barrel | 88.3 | |
| 2gl5_A | 410 | Putative dehydratase protein; structural genomics, | 88.22 | |
| 2hjp_A | 290 | Phosphonopyruvate hydrolase; phosporus-Ca cleavage | 88.22 | |
| 1rd5_A | 262 | Tryptophan synthase alpha chain, chloroplast; hydr | 88.19 | |
| 4ef8_A | 354 | Dihydroorotate dehydrogenase; phenyl isothiocyanat | 87.95 | |
| 3toy_A | 383 | Mandelate racemase/muconate lactonizing enzyme FA | 87.9 | |
| 2gjl_A | 328 | Hypothetical protein PA1024; 2-nitropropane dioxyg | 87.87 | |
| 3gr7_A | 340 | NADPH dehydrogenase; flavin, FMN, beta-alpha-barre | 87.83 | |
| 2wkj_A | 303 | N-acetylneuraminate lyase; directed evolution, sia | 87.81 | |
| 3ugv_A | 390 | Enolase; enzyme function initiative, EFI, lyase; 2 | 87.77 | |
| 3b8i_A | 287 | PA4872 oxaloacetate decarboxylase; alpha/beta barr | 87.69 | |
| 1h1y_A | 228 | D-ribulose-5-phosphate 3-epimerase; oxidative pent | 87.66 | |
| 2hxt_A | 441 | L-fuconate dehydratase; enolase superfamily, D-ery | 87.62 | |
| 3r4e_A | 418 | Mandelate racemase/muconate lactonizing enzyme; en | 87.54 | |
| 1zlp_A | 318 | PSR132, petal death protein; TIM-barrel, helix swa | 87.34 | |
| 1vhn_A | 318 | Putative flavin oxidoreducatase; structural genomi | 87.28 | |
| 2o56_A | 407 | Putative mandelate racemase; dehydratase, structur | 87.27 | |
| 3dg3_A | 367 | Muconate cycloisomerase; muconate lactonizing enzy | 87.19 | |
| 1zlp_A | 318 | PSR132, petal death protein; TIM-barrel, helix swa | 87.13 | |
| 1vyr_A | 364 | Pentaerythritol tetranitrate reductase; oxidoreduc | 87.13 | |
| 3sbf_A | 401 | Mandelate racemase / muconate lactonizing enzyme; | 87.11 | |
| 1xg4_A | 295 | Probable methylisocitrate lyase; 2-methylisocitrat | 87.08 | |
| 1w3i_A | 293 | EDA, 2-keto-3-deoxy gluconate aldolase; archaeal m | 87.05 | |
| 3ngj_A | 239 | Deoxyribose-phosphate aldolase; lyase, structural | 87.02 | |
| 1yad_A | 221 | Regulatory protein TENI; TIM barrel, transcription | 86.81 | |
| 3kts_A | 192 | Glycerol uptake operon antiterminator regulatory; | 86.75 | |
| 3fs2_A | 298 | 2-dehydro-3-deoxyphosphooctonate aldolase; ssgcid, | 86.66 | |
| 1me8_A | 503 | Inosine-5'-monophosphate dehydrogenase; alpha beta | 86.52 | |
| 2ox4_A | 403 | Putative mandelate racemase; enolase, dehydratase, | 86.45 | |
| 1ujp_A | 271 | Tryptophan synthase alpha chain; riken structural | 86.36 | |
| 1sjd_A | 368 | N-acylamino acid racemase; lyase, isomerase; HET: | 86.33 | |
| 1w3i_A | 293 | EDA, 2-keto-3-deoxy gluconate aldolase; archaeal m | 86.32 | |
| 3ddm_A | 392 | Putative mandelate racemase/muconate lactonizing e | 86.31 | |
| 3sr7_A | 365 | Isopentenyl-diphosphate delta-isomerase; isopenten | 86.26 | |
| 1rpx_A | 230 | Protein (ribulose-phosphate 3-epimerase); chloropl | 86.24 | |
| 2e6f_A | 314 | Dihydroorotate dehydrogenase; chagas disease, pyri | 86.23 | |
| 1tv5_A | 443 | Dhodehase, dihydroorotate dehydrogenase homolog, m | 86.21 | |
| 3fa4_A | 302 | 2,3-dimethylmalate lyase; alpha/beta barrel, helix | 86.17 | |
| 3tji_A | 422 | Mandelate racemase/muconate lactonizing enzyme, N | 86.15 | |
| 3oa3_A | 288 | Aldolase; structural genomics, seattle structural | 86.13 | |
| 3q45_A | 368 | Mandelate racemase/muconate lactonizing enzyme FA | 86.11 | |
| 1f6k_A | 293 | N-acetylneuraminate lyase; beta barrel; 1.60A {Hae | 85.9 | |
| 1p0k_A | 349 | Isopentenyl-diphosphate delta-isomerase; terpene b | 85.89 | |
| 3ajx_A | 207 | 3-hexulose-6-phosphate synthase; HPS, OMPDC supraf | 85.87 | |
| 3hgj_A | 349 | Chromate reductase; TIM barrel, oxidoreductase; HE | 85.83 | |
| 3eoo_A | 298 | Methylisocitrate lyase; seattle structural genomic | 85.68 | |
| 2zad_A | 345 | Muconate cycloisomerase; muconate lactonizing enzy | 85.68 | |
| 1wa3_A | 205 | 2-keto-3-deoxy-6-phosphogluconate aldolase; KDPG, | 85.59 | |
| 3tml_A | 288 | 2-dehydro-3-deoxyphosphooctonate aldolase; ssgcid, | 85.52 | |
| 3mqt_A | 394 | Mandelate racemase/muconate lactonizing protein; P | 85.48 | |
| 3f4w_A | 211 | Putative hexulose 6 phosphate synthase; humps, mal | 85.43 | |
| 1mzh_A | 225 | Deoxyribose-phosphate aldolase; alpha-beta barrel, | 85.4 | |
| 4aaj_A | 228 | N-(5'-phosphoribosyl)anthranilate isomerase; alpha | 85.37 | |
| 1m3u_A | 264 | 3-methyl-2-oxobutanoate hydroxymethyltransferase; | 85.32 | |
| 1s2w_A | 295 | Phosphoenolpyruvate phosphomutase; phosphonopyruva | 85.31 | |
| 2nuw_A | 288 | 2-keto-3-deoxygluconate/2-keto-3-deoxy-6-phospho a | 85.28 | |
| 1xi3_A | 215 | Thiamine phosphate pyrophosphorylase; structural g | 85.24 | |
| 2gou_A | 365 | Oxidoreductase, FMN-binding; OLD yeallow enzyme, f | 85.16 | |
| 3g8r_A | 350 | Probable spore coat polysaccharide biosynthesis P; | 85.09 | |
| 2qq6_A | 410 | Mandelate racemase/muconate lactonizing enzyme- li | 85.03 | |
| 3bo9_A | 326 | Putative nitroalkan dioxygenase; TM0800, structura | 85.01 | |
| 3tha_A | 252 | Tryptophan synthase alpha chain; structural genomi | 84.93 | |
| 1chr_A | 370 | Chloromuconate cycloisomerase; 3.00A {Ralstonia eu | 84.77 | |
| 3vcn_A | 425 | Mannonate dehydratase; enolase, magnesium binding | 84.73 | |
| 2z6i_A | 332 | Trans-2-enoyl-ACP reductase II; fatty acid synthes | 84.72 | |
| 4a29_A | 258 | Engineered retro-aldol enzyme RA95.0; de novo prot | 84.58 | |
| 3l5l_A | 363 | Xenobiotic reductase A; TIM barrel, oxidoreductase | 84.31 | |
| 3my9_A | 377 | Muconate cycloisomerase; structural genomics, PSI- | 84.3 | |
| 3mkc_A | 394 | Racemase; metabolic process, PSI2, NYSGXRC, struct | 84.28 | |
| 3i65_A | 415 | Dihydroorotate dehydrogenase homolog, mitochondria | 84.26 | |
| 3lye_A | 307 | Oxaloacetate acetyl hydrolase; (alpha/beta)8 barre | 84.22 | |
| 3mwc_A | 400 | Mandelate racemase/muconate lactonizing protein; e | 83.97 | |
| 2hjp_A | 290 | Phosphonopyruvate hydrolase; phosporus-Ca cleavage | 83.92 | |
| 2ze3_A | 275 | DFA0005; organic waste LEFT-OVER decomposition, al | 83.88 | |
| 3go2_A | 409 | Putative L-alanine-DL-glutamate epimerase; structu | 83.68 | |
| 3v3w_A | 424 | Starvation sensing protein RSPA; enolase, enzyme f | 83.68 | |
| 3lye_A | 307 | Oxaloacetate acetyl hydrolase; (alpha/beta)8 barre | 83.01 | |
| 1gox_A | 370 | (S)-2-hydroxy-acid oxidase, peroxisomal; oxidoredu | 82.91 | |
| 3o63_A | 243 | Probable thiamine-phosphate pyrophosphorylase; thi | 82.56 | |
| 3hjz_A | 334 | Transaldolase B; parachlorococcus, marine, cyanoba | 82.16 | |
| 2zc8_A | 369 | N-acylamino acid racemase; octamer, TIM beta/alpha | 82.13 | |
| 2qiw_A | 255 | PEP phosphonomutase; structural genomics, joint ce | 82.12 | |
| 1r0m_A | 375 | N-acylamino acid racemase; isomerase; 1.30A {Deino | 82.07 | |
| 2fli_A | 220 | Ribulose-phosphate 3-epimerase; (beta/alpha)8-barr | 81.94 | |
| 3e96_A | 316 | Dihydrodipicolinate synthase; structural genomics, | 81.9 | |
| 1f8m_A | 429 | Isocitrate lyase, ICL; alpha-beta barrel, helix-sw | 81.62 | |
| 2pcq_A | 283 | Putative dihydrodipicolinate synthase; lyase, lysi | 81.61 | |
| 2cu0_A | 486 | Inosine-5'-monophosphate dehydrogenase; structural | 81.49 | |
| 1m3u_A | 264 | 3-methyl-2-oxobutanoate hydroxymethyltransferase; | 81.46 | |
| 1o66_A | 275 | 3-methyl-2-oxobutanoate hydroxymethyltransferase; | 81.45 | |
| 3noy_A | 366 | 4-hydroxy-3-methylbut-2-EN-1-YL diphosphate synth; | 81.4 | |
| 3sgz_A | 352 | Hydroxyacid oxidase 2; flavoprotein, homology, INH | 81.32 | |
| 3gd6_A | 391 | Muconate cycloisomerase; structural genomics, NYSG | 80.86 | |
| 3bw2_A | 369 | 2-nitropropane dioxygenase; TIM barrel, oxidoreduc | 80.78 | |
| 3vkj_A | 368 | Isopentenyl-diphosphate delta-isomerase; type 2 is | 80.74 | |
| 2ze3_A | 275 | DFA0005; organic waste LEFT-OVER decomposition, al | 80.61 | |
| 2qkf_A | 280 | 3-deoxy-D-manno-octulosonic acid 8- phosphate SYN; | 80.47 | |
| 1v5x_A | 203 | PRA isomerase, phosphoribosylanthranilate isomeras | 80.06 |
| >3sgz_A Hydroxyacid oxidase 2; flavoprotein, homology, INH oxidoreductase-oxidoreductase inhibitor complex; HET: FMN HO6; 1.35A {Rattus norvegicus} PDB: 1tb3_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=6.2e-81 Score=606.38 Aligned_cols=343 Identities=46% Similarity=0.746 Sum_probs=317.2
Q ss_pred CCChHHHHHHHHHhCCccccccccCCCCchhhHHHhHhccccceeeccccCCCCCCccceeEcCeeeccceEeCcccchh
Q 017718 4 ITNVMEYEAIAKEKLPKMVFDYYASGAEDQWTLQENRNAFSRILFRPRILIDVSKIDMNTTVLGFKISMPIMIAPTAMQK 83 (367)
Q Consensus 4 ~~~~~d~~~~A~~~l~~~~~~y~~~ga~~~~t~~~n~~~~~~i~l~pr~l~~~~~vd~st~i~g~~l~~Pi~iAPm~~~~ 83 (367)
++|++|||+.||++||+.+|+|++||++||.|+++|+++|++|+|+||+|+|++++||+|++||+++++||++||+++++
T Consensus 2 ~~~~~d~~~~A~~~lp~~~~~Y~~~ga~~e~t~~~N~~af~~~~l~prvl~dv~~~d~~t~llG~~~~~P~~iaP~g~~~ 81 (352)
T 3sgz_A 2 LVCLADFKAHAQKQLSKTSWDFIEGEADDGITYSENIAAFKRIRLRPRYLRDMSKVDTRTTIQGQEISAPICISPTAFHS 81 (352)
T ss_dssp CCSHHHHHHHHHHTSCHHHHHHHHCCCTTCHHHHHHHHHHHTCCBCCCCSSCCSSCBCCEEETTEEESSSEEECCCSCGG
T ss_pred CCCHHHHHHHHHHHCCHHHHHHHhcCCcchHHHHHHHHHHHhceeeccccCCCCCCCCceEECCcccCCcceechHHHHH
Confidence 68999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccCChhhHHHHHHHHHcCCceeecCCCCCCHHHHHhhCC-CceEEEEeecCCHHHHHHHHHHHHHcCCcEEEEecCCCCC
Q 017718 84 MAHPEGEYATARAASAAGTIMTLSSWSTSSVEEVASTGP-GIRFFQLYVYKDRNVVAQLVRRAERAGFKAIALTVDTPRL 162 (367)
Q Consensus 84 l~~~~~e~~~a~aa~~~G~~~~vs~~~~~~~e~i~~~~~-~~~~~QLy~~~d~~~~~~~l~ra~~~G~~ai~itvd~p~~ 162 (367)
+.||++|.+++++|+++|+++++|+++++++|||.+..+ ++.|||||+.+|++.++++++||+++||++|++|||+|+.
T Consensus 82 l~~~~ge~~~araa~~~gi~~~lSt~ss~s~e~v~~~~~~~~~wfQlY~~~d~~~~~~l~~ra~~aG~~alvlTvD~p~~ 161 (352)
T 3sgz_A 82 IAWPDGEKSTARAAQEANICYVISSYASYSLEDIVAAAPEGFRWFQLYMKSDWDFNKQMVQRAEALGFKALVITIDTPVL 161 (352)
T ss_dssp GTCTTHHHHHHHHHHHHTCEEEECTTCSSCHHHHHHHSTTCEEEEECCCCSCHHHHHHHHHHHHHTTCCCEEEECSCSSC
T ss_pred hcCccHHHHHHHHHHHcCCCeEeCCCCCCCHHHHHHhccCccceeccccCCCHHHHHHHHHHHHHcCCCEEEEEeCCCCC
Confidence 999999999999999999999999999999999999877 7899999999999999999999999999999999999999
Q ss_pred CchhHHhhhhcCCCCccccccccccccCccccccchhhHHHhhhccCccccHH---HHHhhcCCCEEEEecCCHHHHHHH
Q 017718 163 GRREADIKNRFTLPPFLTLKNFQGLDLGKMDEANDSGLAAYVAGQIDRSLSWK---WLQTITKLPILVKGVLTAEDARIA 239 (367)
Q Consensus 163 g~r~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~---~l~~~~~~Pv~vK~v~~~~~a~~~ 239 (367)
|+|++|+|++|.+|++++.+|+.+... ....++.. ....|+.++|+ ++|+.+++||++|++.+.++|+.+
T Consensus 162 g~R~~d~r~~~~~p~~~~~~~~~~~~~----~~~~~~~~---~~~~d~~~~w~~i~~lr~~~~~PvivK~v~~~e~A~~a 234 (352)
T 3sgz_A 162 GNRRRDKRNQLNLEANILKAALRALKE----EKPTQSVP---VLFPKASFCWNDLSLLQSITRLPIILKGILTKEDAELA 234 (352)
T ss_dssp CCCHHHHHHHHHSCHHHHTTCC----------------------CCCTTCCHHHHHHHHHHCCSCEEEEEECSHHHHHHH
T ss_pred CcchhhhhcCCCCCcccchhhhccccc----ccccchhh---hhccCCCCCHHHHHHHHHhcCCCEEEEecCcHHHHHHH
Confidence 999999999999998777766543210 00011111 14467888997 899999999999999999999999
Q ss_pred HHcCCcEEEEcCCCCCCCCCccchHHHHHHHHHHhcCCCcEEEecCCCCHHHHHHHHHcCCCEEEechHHHHHhhccChH
Q 017718 240 VQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFIGRPVVYSLAAEGEK 319 (367)
Q Consensus 240 ~~~G~d~i~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~~~via~GGI~~~~dv~kal~lGAd~V~ig~~~l~~l~~~G~~ 319 (367)
.++|+|+|+|+||||+++++++++++.|+++++.+++++|||++|||+++.|++|+|++|||+|+|||+|+|++++.|++
T Consensus 235 ~~~GaD~I~vsn~GG~~~d~~~~~~~~L~~i~~av~~~ipVia~GGI~~g~Dv~kaLalGA~aV~iGr~~l~~l~~~G~~ 314 (352)
T 3sgz_A 235 MKHNVQGIVVSNHGGRQLDEVSASIDALREVVAAVKGKIEVYMDGGVRTGTDVLKALALGARCIFLGRPILWGLACKGED 314 (352)
T ss_dssp HHTTCSEEEECCGGGTSSCSSCCHHHHHHHHHHHHTTSSEEEEESSCCSHHHHHHHHHTTCSEEEESHHHHHHHHHHHHH
T ss_pred HHcCCCEEEEeCCCCCccCCCccHHHHHHHHHHHhCCCCeEEEECCCCCHHHHHHHHHcCCCEEEECHHHHHHHHhcCcH
Confidence 99999999999999999999999999999999988778999999999999999999999999999999999999989999
Q ss_pred HHHHHHHHHHHHHHHHHHHhCCCChhhhccccee
Q 017718 320 GVRRVLEMLREEFELAMALSGCRSLKEITRDHIV 353 (367)
Q Consensus 320 ~v~~~i~~l~~el~~~m~~~G~~si~~l~~~~l~ 353 (367)
++.++++.+++||+.+|.++|+++++|++++.++
T Consensus 315 gv~~~l~~l~~el~~~m~~~G~~~i~el~~~~~~ 348 (352)
T 3sgz_A 315 GVKEVLDILTAELHRCMTLSGCQSVAEISPDLIQ 348 (352)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTCSBGGGCCGGGBS
T ss_pred HHHHHHHHHHHHHHHHHHHhCCCcHHHHhhhcch
Confidence 9999999999999999999999999999998875
|
| >2nzl_A Hydroxyacid oxidase 1; HAOX1, glycolate oxidase, GOX, GOX1, structural genomics, structural genom consortium, SGC, oxidoreductase; HET: FMN; 1.35A {Homo sapiens} PDB: 2rdu_A* 2rdt_A* 2rdw_A* 2w0u_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.3e-73 Score=565.79 Aligned_cols=353 Identities=57% Similarity=0.928 Sum_probs=317.4
Q ss_pred CCCChHHHHHHHHHhCCccccccccCCCCchhhHHHhHhccccceeeccccCCCCCCccceeEcCeeeccceEeCcccch
Q 017718 3 EITNVMEYEAIAKEKLPKMVFDYYASGAEDQWTLQENRNAFSRILFRPRILIDVSKIDMNTTVLGFKISMPIMIAPTAMQ 82 (367)
Q Consensus 3 ~~~~~~d~~~~A~~~l~~~~~~y~~~ga~~~~t~~~n~~~~~~i~l~pr~l~~~~~vd~st~i~g~~l~~Pi~iAPm~~~ 82 (367)
.++|++|||+.||++||+.+|+|+.||++||.|+++|+++|++|+|+||+|++++++||+|+|||+++++||++||||++
T Consensus 26 ~~~~~~d~~~~A~~~lp~~~~~y~~~ga~~e~t~~~N~~~f~~i~l~pr~L~~~~~~d~st~i~G~~l~~Pi~iAPmg~~ 105 (392)
T 2nzl_A 26 RLICINDYEQHAKSVLPKSIYDYYRSGANDEETLADNIAAFSRWKLYPRMLRNVAETDLSTSVLGQRVSMPICVGATAMQ 105 (392)
T ss_dssp CCCSHHHHHHHHHHHSCHHHHHHHHCCSTTCHHHHHHHHHHHHSCBCCCCSSCCTTCBCCEEETTEEESSSEEECCCSCG
T ss_pred cCCCHHHHHHHHHhhCCHHHHhhcCCCCCccHHHHHHHHhhheEEeehhhccCCcCCCcceEECCEecCCceEecccccc
Confidence 46899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hccCChhhHHHHHHHHHcCCceeecCCCCCCHHHHHhhCC-CceEEEEeecCCHHHHHHHHHHHHHcCCcEEEEecCCCC
Q 017718 83 KMAHPEGEYATARAASAAGTIMTLSSWSTSSVEEVASTGP-GIRFFQLYVYKDRNVVAQLVRRAERAGFKAIALTVDTPR 161 (367)
Q Consensus 83 ~l~~~~~e~~~a~aa~~~G~~~~vs~~~~~~~e~i~~~~~-~~~~~QLy~~~d~~~~~~~l~ra~~~G~~ai~itvd~p~ 161 (367)
.+.||++|.+++++|+++|+++++|+++++++|++.+..+ .+.|||||.++|++.+.++++|++++|++++++|+|||+
T Consensus 106 ~l~~~~~e~~laraA~~~G~~~~~s~~~s~~le~v~~~~~~~~~~~QLy~~~d~~~~~~~~~ra~~~G~~al~itvd~p~ 185 (392)
T 2nzl_A 106 RMAHVDGELATVRACQSLGTGMMLSSWATSSIEEVAEAGPEALRWLQLYIYKDREVTKKLVRQAEKMGYKAIFVTVDTPY 185 (392)
T ss_dssp GGTSTTHHHHHHHHHHHHTCEEEECTTCSSCHHHHHHHCTTSEEEEEECCBSSHHHHHHHHHHHHHTTCCCEEEECSCSS
T ss_pred ccccchHHHHHHHHHHHcCCCeeccchHHHHHHHHHHhcCCCcEEEEEEecCCHHHHHHHHHHHHHCCCCEEEEeCCCCC
Confidence 9999999999999999999999999999999999987654 789999999999999999999999999999999999999
Q ss_pred CCchhHHhhhhcCCCCccccccccccccC-cc-cc-ccchhhHHHhhhccCccccHH---HHHhhcCCCEEEEecCCHHH
Q 017718 162 LGRREADIKNRFTLPPFLTLKNFQGLDLG-KM-DE-ANDSGLAAYVAGQIDRSLSWK---WLQTITKLPILVKGVLTAED 235 (367)
Q Consensus 162 ~g~r~~~~~~~~~~p~~~~~~~~~~~~~~-~~-~~-~~~~~~~~~~~~~~d~~~~~~---~l~~~~~~Pv~vK~v~~~~~ 235 (367)
.|+|++|+|++|.+|++++.+|+...... .. .. ..+.....++...++++++|+ ++++.+++||++|++.+.++
T Consensus 186 ~g~R~~d~r~~~~lp~~~~~~n~~~~~~~~~p~~~~~~g~~~~~~~~~~~d~~~~~~~i~~lr~~~~~PvivKgv~~~e~ 265 (392)
T 2nzl_A 186 LGNRLDDVRNRFKLPPQLRMKNFETSTLSFSPEENFGDDSGLAAYVAKAIDPSISWEDIKWLRRLTSLPIVAKGILRGDD 265 (392)
T ss_dssp CCCCHHHHHHTCCCCTTCCCTTC-----------------CHHHHHHHHBCTTCCHHHHHHHC--CCSCEEEEEECCHHH
T ss_pred ccchhHhHhhccCCccccchhhhhhhhcccCccccccCcchHHHHHhhcCChHHHHHHHHHHHHhhCCCEEEEecCCHHH
Confidence 99999999999999987766654211000 00 00 111223356666678888886 88888999999999999999
Q ss_pred HHHHHHcCCcEEEEcCCCCCCCCCccchHHHHHHHHHHhcCCCcEEEecCCCCHHHHHHHHHcCCCEEEechHHHHHhhc
Q 017718 236 ARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFIGRPVVYSLAA 315 (367)
Q Consensus 236 a~~~~~~G~d~i~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~~~via~GGI~~~~dv~kal~lGAd~V~ig~~~l~~l~~ 315 (367)
|+.+.++|+|+|+|+||||++.++++++++.|+++++.+++++|||++|||+++.|++|+|++|||+|++||||++++.+
T Consensus 266 A~~a~~aGad~I~vs~~ggr~~~~g~~~~~~l~~v~~av~~~ipVia~GGI~~g~Dv~kalalGAd~V~iGr~~l~~~~~ 345 (392)
T 2nzl_A 266 AREAVKHGLNGILVSNHGARQLDGVPATIDVLPEIVEAVEGKVEVFLDGGVRKGTDVLKALALGAKAVFVGRPIVWGLAF 345 (392)
T ss_dssp HHHHHHTTCCEEEECCGGGTSSTTCCCHHHHHHHHHHHHTTSSEEEECSSCCSHHHHHHHHHTTCSEEEECHHHHHHHHH
T ss_pred HHHHHHcCCCEEEeCCCCCCcCCCCcChHHHHHHHHHHcCCCCEEEEECCCCCHHHHHHHHHhCCCeeEECHHHHHHHHh
Confidence 99999999999999999999999999999999999998877899999999999999999999999999999999999988
Q ss_pred cChHHHHHHHHHHHHHHHHHHHHhCCCChhhhcccceeec
Q 017718 316 EGEKGVRRVLEMLREEFELAMALSGCRSLKEITRDHIVTE 355 (367)
Q Consensus 316 ~G~~~v~~~i~~l~~el~~~m~~~G~~si~~l~~~~l~~~ 355 (367)
.|++++.++++.+++||+.+|.++|++++.|+++..|...
T Consensus 346 ~g~~gv~~~l~~l~~el~~~m~~~G~~~i~el~~~~l~~~ 385 (392)
T 2nzl_A 346 QGEKGVQDVLEILKEEFRLAMALSGCQNVKVIDKTLVRKN 385 (392)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHTCSBGGGCCGGGBC--
T ss_pred cChHHHHHHHHHHHHHHHHHHHHhCCCcHHHHhhhhhhhC
Confidence 8999999999999999999999999999999999988653
|
| >2nli_A Lactate oxidase; flavoenzyme, FMN, D-lactate, oxidoreducta; HET: FMN; 1.59A {Aerococcus viridans} PDB: 2zfa_A* 2du2_A* 2e77_A* 2j6x_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=7.7e-73 Score=556.56 Aligned_cols=349 Identities=35% Similarity=0.565 Sum_probs=304.3
Q ss_pred CCCCChHHHHHHHHHhCCccccccccCCCCchhhHHHhHhccccceeeccccCCCCCCccceeEcCeeeccceEeCcccc
Q 017718 2 GEITNVMEYEAIAKEKLPKMVFDYYASGAEDQWTLQENRNAFSRILFRPRILIDVSKIDMNTTVLGFKISMPIMIAPTAM 81 (367)
Q Consensus 2 ~~~~~~~d~~~~A~~~l~~~~~~y~~~ga~~~~t~~~n~~~~~~i~l~pr~l~~~~~vd~st~i~g~~l~~Pi~iAPm~~ 81 (367)
..++|++|||+.||++||+.+|+|+.||++||.|+++|+.+|++|+|+||+|++++++||+|+|+|+++++||++|||++
T Consensus 11 ~~~~~~~d~~~~A~~~l~~~~~~y~~~ga~~~~t~~~N~~~f~~i~l~pr~L~~~~~~d~st~i~G~~l~~Pi~iAPma~ 90 (368)
T 2nli_A 11 IDVVNTYDLEEEASKVVPHGGFNYIAGASGDEWTKRANDRAWKHKLLYPRLAQDVEAPDTSTEILGHKIKAPFIMAPIAA 90 (368)
T ss_dssp CCCSCSHHHHHHHHTTSCHHHHHHHHCCSBTSHHHHHHHHGGGGEEECCCCCCCCSCCCCCEEETTEEESSSEEECCCSC
T ss_pred ccCCCHHHHHHHHHHhCCHHHHhhcccCCCccHHHHHHHHHHhheeeeccccCCCccCCcceEECCEecCCceeecchhh
Confidence 46789999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhccCChhhHHHHHHHHHcCCceeecCCCCCCHHHHHhhC-CCceEEEEeecCCHHHHHHHHHHHHHcCCcEEEEecCCC
Q 017718 82 QKMAHPEGEYATARAASAAGTIMTLSSWSTSSVEEVASTG-PGIRFFQLYVYKDRNVVAQLVRRAERAGFKAIALTVDTP 160 (367)
Q Consensus 82 ~~l~~~~~e~~~a~aa~~~G~~~~vs~~~~~~~e~i~~~~-~~~~~~QLy~~~d~~~~~~~l~ra~~~G~~ai~itvd~p 160 (367)
+++.||++|.+++++|+++|+++++|++++.++|++.+.. ..+.|||||.++|++.+.++++|++++|+++++||+|||
T Consensus 91 ~g~~~~~~e~~la~aa~~~G~~~~~s~~~s~~le~v~~~~~~~~~~~QLy~~~d~~~~~~~~~ra~~aG~~ai~it~d~p 170 (368)
T 2nli_A 91 HGLAHTTKEAGTARAVSEFGTIMSISAYSGATFEEISEGLNGGPRWFQIYMAKDDQQNRDILDEAKSDGATAIILTADST 170 (368)
T ss_dssp GGGTCTTHHHHHHHHHHHHTCCEEECTTCSSCHHHHHHHHTTCCEEEEECCBSSHHHHHHHHHHHHHTTCSCEEEESBCC
T ss_pred ccCCCcHHHHHHHHHHHHcCCCEEeechHhHHHHHHHHhCCCCCEEEEEeccCCHHHHHHHHHHHHHCCCCEEEEcCCCC
Confidence 9999999999999999999999999999989999997754 378999999999999999999999999999999999999
Q ss_pred CCCchhHHhhhhcCCCCccccccccccccCccccccchhhHHHhhhccCccccHH---HHHhhcCCCEEEEecCCHHHHH
Q 017718 161 RLGRREADIKNRFTLPPFLTLKNFQGLDLGKMDEANDSGLAAYVAGQIDRSLSWK---WLQTITKLPILVKGVLTAEDAR 237 (367)
Q Consensus 161 ~~g~r~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~---~l~~~~~~Pv~vK~v~~~~~a~ 237 (367)
+.|+|++|++++|.+| ++.+++...... ...+..+ ++++.+.++.++|+ ++|+.+++||++|++.+.++|+
T Consensus 171 ~~g~r~~d~~~~~~~p--~~~~~~~~~~~~---~~~g~~l-~~~~~~~d~~~~~~~i~~lr~~~~~PvivK~v~~~e~a~ 244 (368)
T 2nli_A 171 VSGNRDRDVKNKFVYP--FGMPIVQRYLRG---TAEGMSL-NNIYGASKQKISPRDIEEIAGHSGLPVFVKGIQHPEDAD 244 (368)
T ss_dssp ---CBC--------CC--SCCHHHHHHHTT---SGGGC------CTTBCSBCCHHHHHHHHHHSSSCEEEEEECSHHHHH
T ss_pred cccchhHHHhhcccCc--chhhhhhccccc---CCCCchH-HhhhhccCchhhHHHHHHHHHHcCCCEEEEcCCCHHHHH
Confidence 9999999999999877 222232100000 0011122 34455567888886 8999999999999999999999
Q ss_pred HHHHcCCcEEEEcCCCCCCCCCccchHHHHHHHHHHhcCCCcEEEecCCCCHHHHHHHHHcCCCEEEechHHHHHhhccC
Q 017718 238 IAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFIGRPVVYSLAAEG 317 (367)
Q Consensus 238 ~~~~~G~d~i~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~~~via~GGI~~~~dv~kal~lGAd~V~ig~~~l~~l~~~G 317 (367)
.+.++|+|+|+|+||||+++++++++++.|+++++.+++++|||++|||+++.|++|+|++|||+|+|||||++++++.|
T Consensus 245 ~a~~~Gad~I~vs~~ggr~~~~g~~~~~~l~~v~~~v~~~ipVia~GGI~~g~D~~kalalGAd~V~iGr~~l~~~~~~G 324 (368)
T 2nli_A 245 MAIKRGASGIWVSNHGARQLYEAPGSFDTLPAIAERVNKRVPIVFDSGVRRGEHVAKALASGADVVALGRPVLFGLALGG 324 (368)
T ss_dssp HHHHTTCSEEEECCGGGTSCSSCCCHHHHHHHHHHHHTTSSCEEECSSCCSHHHHHHHHHTTCSEEEECHHHHHHHHHHH
T ss_pred HHHHcCCCEEEEcCCCcCCCCCCCChHHHHHHHHHHhCCCCeEEEECCCCCHHHHHHHHHcCCCEEEECHHHHHHHHhcC
Confidence 99999999999999999999999999999999999887789999999999999999999999999999999999998889
Q ss_pred hHHHHHHHHHHHHHHHHHHHHhCCCChhhhcccceeecc
Q 017718 318 EKGVRRVLEMLREEFELAMALSGCRSLKEITRDHIVTEW 356 (367)
Q Consensus 318 ~~~v~~~i~~l~~el~~~m~~~G~~si~~l~~~~l~~~~ 356 (367)
++|+.++++.+++||+.+|.++|++++.|+++..+....
T Consensus 325 ~~gv~~~l~~l~~el~~~m~~~G~~~i~~l~~~~l~~~~ 363 (368)
T 2nli_A 325 WQGAYSVLDYFQKDLTRVMQLTGSQNVEDLKGLDLFDNP 363 (368)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTCSSHHHHHTCCEEECT
T ss_pred hHHHHHHHHHHHHHHHHHHHHhCCcCHHHhccccEeecc
Confidence 999999999999999999999999999999999987654
|
| >1gox_A (S)-2-hydroxy-acid oxidase, peroxisomal; oxidoreductase (oxygen(A)); HET: FMN; 2.00A {Spinacia oleracea} SCOP: c.1.4.1 PDB: 1gyl_A* 1al8_A* 1al7_A* 2cdh_0 | Back alignment and structure |
|---|
Probab=100.00 E-value=7.6e-71 Score=543.47 Aligned_cols=364 Identities=89% Similarity=1.335 Sum_probs=322.4
Q ss_pred CCCChHHHHHHHHHhCCccccccccCCCCchhhHHHhHhccccceeeccccCCCCCCccceeEcCeeeccceEeCcccch
Q 017718 3 EITNVMEYEAIAKEKLPKMVFDYYASGAEDQWTLQENRNAFSRILFRPRILIDVSKIDMNTTVLGFKISMPIMIAPTAMQ 82 (367)
Q Consensus 3 ~~~~~~d~~~~A~~~l~~~~~~y~~~ga~~~~t~~~n~~~~~~i~l~pr~l~~~~~vd~st~i~g~~l~~Pi~iAPm~~~ 82 (367)
+++|++|||+.||++||+.+|+|++||++||.|+++|+++|++|+|+||+|++++++||+|+|||+++++||++|||+++
T Consensus 3 ~~~~~~d~~~~A~~~l~~~~~~y~~~ga~~~~t~~~N~~~f~~i~l~pr~l~~~~~~d~~t~i~G~~~~~Pi~iAPmg~~ 82 (370)
T 1gox_A 3 EITNVNEYEAIAKQKLPKMVYDYYASGAEDQWTLAENRNAFSRILFRPRILIDVTNIDMTTTILGFKISMPIMIAPTAMQ 82 (370)
T ss_dssp CCCSTTHHHHHHHHHSCHHHHHHHHCCSTTCHHHHHHHHGGGGEEECCCCSCCCSCCBCCEEETTEEESSSEEECCCSCG
T ss_pred cCCCHHHHHHHHHHhCCHHHHhhhCCCCCccHHHHHHHHHHhhheeeccccCCCCCCCCceEECCcccCCceeEcccchh
Confidence 57899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hccCChhhHHHHHHHHHcCCceeecCCCCCCHHHHHhhCCCceEEEEeecCCHHHHHHHHHHHHHcCCcEEEEecCCCCC
Q 017718 83 KMAHPEGEYATARAASAAGTIMTLSSWSTSSVEEVASTGPGIRFFQLYVYKDRNVVAQLVRRAERAGFKAIALTVDTPRL 162 (367)
Q Consensus 83 ~l~~~~~e~~~a~aa~~~G~~~~vs~~~~~~~e~i~~~~~~~~~~QLy~~~d~~~~~~~l~ra~~~G~~ai~itvd~p~~ 162 (367)
.+.||++|.+++++|+++|+++++|++++.++|++.+..+++.|||||+++|++.+.+++++++++|+++++||+|||+.
T Consensus 83 ~l~~~~~e~a~a~aa~~~G~~~~~s~~~~~~ieev~~~~~~~~~~QLy~~~d~~~~~~~~~~a~~~G~~ai~it~d~p~~ 162 (370)
T 1gox_A 83 KMAHPEGEYATARAASAAGTIMTLSSWATSSVEEVASTGPGIRFFQLYVYKDRNVVAQLVRRAERAGFKAIALTVDTPRL 162 (370)
T ss_dssp GGTCTTHHHHHHHHHHHTTCCEEECTTCSSCHHHHHTTCCCCEEEEECCBSSHHHHHHHHHHHHHTTCCEEEEECSCSSC
T ss_pred hhccchHHHHHHHHHHHcCCCeeccCCCCCCHHHHHhhcCCCceEEEecCCCchHHHHHHHHHHHCCCCEEEEeCCCCcc
Confidence 99999999999999999999999999999999999887678899999999999999999999999999999999999999
Q ss_pred CchhHHhhhhcCCCCccccccccccccCccccccchhhHHHhhhccCccccHH---HHHhhcCCCEEEEecCCHHHHHHH
Q 017718 163 GRREADIKNRFTLPPFLTLKNFQGLDLGKMDEANDSGLAAYVAGQIDRSLSWK---WLQTITKLPILVKGVLTAEDARIA 239 (367)
Q Consensus 163 g~r~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~---~l~~~~~~Pv~vK~v~~~~~a~~~ 239 (367)
|+|++|+++++.+|.++..+++............++....+++...++.++|+ ++++.+++||++|++.++++++.+
T Consensus 163 g~r~~d~r~~~~~p~~~~~~~~~~~~~~~~~~~~g~~~~~~v~~~~~~~~~~~~i~~l~~~~~~pv~vK~~~~~e~a~~a 242 (370)
T 1gox_A 163 GRREADIKNRFVLPPFLTLKNFEGIDLGKMDKANDSGLSSYVAGQIDRSLSWKDVAWLQTITSLPILVKGVITAEDARLA 242 (370)
T ss_dssp CCCHHHHHTTCCCCTTCCCGGGSSSCCC---------HHHHHHHTBCTTCCHHHHHHHHHHCCSCEEEECCCSHHHHHHH
T ss_pred cccHHHHHhccCCCcccchhhhhhhhhhccccccCccHHHHHHhhcCccchHHHHHHHHHHhCCCEEEEecCCHHHHHHH
Confidence 99999999999888776555543211000001122233345666668888886 888889999999999999999999
Q ss_pred HHcCCcEEEEcCCCCCCCCCccchHHHHHHHHHHhcCCCcEEEecCCCCHHHHHHHHHcCCCEEEechHHHHHhhccChH
Q 017718 240 VQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFIGRPVVYSLAAEGEK 319 (367)
Q Consensus 240 ~~~G~d~i~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~~~via~GGI~~~~dv~kal~lGAd~V~ig~~~l~~l~~~G~~ 319 (367)
.++|+|+|+|+||||+++++++++++.|+++++.+++++|||++|||++++|+.|++++|||+|+|||+|++++.+.|++
T Consensus 243 ~~~Gad~I~vs~~ggr~~~~~~~~~~~l~~v~~~~~~~ipvia~GGI~~~~D~~k~l~~GAdaV~iGr~~l~~~~~~G~~ 322 (370)
T 1gox_A 243 VQHGAAGIIVSNHGARQLDYVPATIMALEEVVKAAQGRIPVFLDGGVRRGTDVFKALALGAAGVFIGRPVVFSLAAEGEA 322 (370)
T ss_dssp HHTTCSEEEECCGGGTSSTTCCCHHHHHHHHHHHTTTSSCEEEESSCCSHHHHHHHHHHTCSEEEECHHHHHHHHHHHHH
T ss_pred HHcCCCEEEECCCCCccCCCcccHHHHHHHHHHHhCCCCEEEEECCCCCHHHHHHHHHcCCCEEeecHHHHHHHhhccHH
Confidence 99999999999999999999999999999999988778999999999999999999999999999999999998888999
Q ss_pred HHHHHHHHHHHHHHHHHHHhCCCChhhhcccceeeccCCCCCCCCCC
Q 017718 320 GVRRVLEMLREEFELAMALSGCRSLKEITRDHIVTEWDASLPRPVPR 366 (367)
Q Consensus 320 ~v~~~i~~l~~el~~~m~~~G~~si~~l~~~~l~~~~~~~~~~~~~~ 366 (367)
++.++++.+++||+.+|.++|++++.|++++.+.....+.....+.+
T Consensus 323 gv~~~~~~l~~el~~~m~~~G~~~i~el~~~~l~~~~~~~~~~~~~~ 369 (370)
T 1gox_A 323 GVKKVLQMMRDEFELTMALSGCRSLKEISRSHIAADWDGPSSRAVAR 369 (370)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTCSBTTTCCGGGEEETTC---------
T ss_pred HHHHHHHHHHHHHHHHHHHhCCCCHHHhhhcceeccccccccchhhc
Confidence 99999999999999999999999999999999987766655555544
|
| >1kbi_A Cytochrome B2, L-LCR; flavocytochrome B2, electron transfer, oxidoreductase; HET: HEM FMN; 2.30A {Saccharomyces cerevisiae} SCOP: c.1.4.1 d.120.1.1 PDB: 1fcb_A* 1lco_A* 1ldc_A* 1sze_A* 2oz0_A* 1szf_A* 1szg_A* 1ltd_A* 1kbj_A* 1qcw_A* 3ks0_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=4e-69 Score=549.72 Aligned_cols=351 Identities=40% Similarity=0.678 Sum_probs=314.4
Q ss_pred CCCCChHHHHHHHHHhCCccccccccCCCCchhhHHHhHhccccceeeccccCCCCCCccceeEcCeeeccceEeCcccc
Q 017718 2 GEITNVMEYEAIAKEKLPKMVFDYYASGAEDQWTLQENRNAFSRILFRPRILIDVSKIDMNTTVLGFKISMPIMIAPTAM 81 (367)
Q Consensus 2 ~~~~~~~d~~~~A~~~l~~~~~~y~~~ga~~~~t~~~n~~~~~~i~l~pr~l~~~~~vd~st~i~g~~l~~Pi~iAPm~~ 81 (367)
..++|++|||+.||++||+.+|+|+.||+++|.|+++|+++|++|+|+||+|++++++||+|+|||+++++||+||||++
T Consensus 120 ~~~~~~~d~~~~A~~~l~~~~~~y~~~ga~~e~t~~~N~~af~~i~l~pr~L~dv~~~d~st~i~G~~l~~Pi~iAPma~ 199 (511)
T 1kbi_A 120 DNIINLYDFEYLASQTLTKQAWAYYSSGANDEVTHRENHNAYHRIFFKPKILVDVRKVDISTDMLGSHVDVPFYVSATAL 199 (511)
T ss_dssp GGCCSHHHHHHHHHHHSCHHHHHHHHCCSTTCHHHHHHHHGGGGCEECCCCSCCCSSCBCCEEETTEEESSSEEECCCSC
T ss_pred cccCCHHHHHHHHHhhCCHHHhhhccCCCCchhHHHHHHHHhhhhccccccccCcccccCccccCCccCCCCeEeccchh
Confidence 34689999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhccCC-hhhHHHHHHHHH--cCCceeecCCCCCCHHHHHhhC---CCceEEEEeecCCHHHHHHHHHHHHHcCCcEEEE
Q 017718 82 QKMAHP-EGEYATARAASA--AGTIMTLSSWSTSSVEEVASTG---PGIRFFQLYVYKDRNVVAQLVRRAERAGFKAIAL 155 (367)
Q Consensus 82 ~~l~~~-~~e~~~a~aa~~--~G~~~~vs~~~~~~~e~i~~~~---~~~~~~QLy~~~d~~~~~~~l~ra~~~G~~ai~i 155 (367)
+++.|| ++|.+++++|++ +|+++++|++++.++|++.+.. .++.|||||+++|++.+.+++++++++|+++|+|
T Consensus 200 ~~l~~~~~~e~alaraA~~~~~G~~~~~s~~a~~s~e~v~~~~~~~~~~~~~QLy~~~d~~~~~~~~~rae~aG~~al~i 279 (511)
T 1kbi_A 200 CKLGNPLEGEKDVARGCGQGVTKVPQMISTLASCSPEEIIEAAPSDKQIQWYQLYVNSDRKITDDLVKNVEKLGVKALFV 279 (511)
T ss_dssp GGGTCTTTTHHHHHHHHHSSSSCCCEEECTTCSSCHHHHHHTCCCSSCCEEEEECCCSSHHHHHHHHHHHHHHTCSCEEE
T ss_pred ccccChhhHHHHHHHHHHHhCCCeeEEeCCcccCCHHHHHhhcCCCCCCeEEEEeecCCHHHHHHHHHHHHHcCCCEEEE
Confidence 999999 999999999999 9999999999999999998765 2789999999999999999999999999999999
Q ss_pred ecCCCCCCchhHHhhhhcCCCCccccccccccccCccccccchhhHHHhhhccCccccHH---HHHhhcCCCEEEEecCC
Q 017718 156 TVDTPRLGRREADIKNRFTLPPFLTLKNFQGLDLGKMDEANDSGLAAYVAGQIDRSLSWK---WLQTITKLPILVKGVLT 232 (367)
Q Consensus 156 tvd~p~~g~r~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~---~l~~~~~~Pv~vK~v~~ 232 (367)
|+|||+.|+|+++++++|..|.... ..+.+. .. ....+...++....++.++|+ ++|+.+++||++|++.+
T Consensus 280 tvd~p~~g~R~~~~r~g~~~p~~~~-~~~~g~---~~--~~~~g~~~~~~~~~d~~~~~~~i~~lr~~~~~PvivKgv~~ 353 (511)
T 1kbi_A 280 TVDAPSLGQREKDMKLKFSNTKAGP-KAMKKT---NV--EESQGASRALSKFIDPSLTWKDIEELKKKTKLPIVIKGVQR 353 (511)
T ss_dssp ECSCSSCCCCHHHHHHHHTTCC--------CC---CC--SSCCCGGGGCBTTBCTTCCHHHHHHHHHHCSSCEEEEEECS
T ss_pred eCCCCCccccHHHHhccCCCCcccc-cccccc---cc--cccccHHHHHhhccChHhHHHHHHHHHHHhCCcEEEEeCCC
Confidence 9999999999999999998774211 100000 00 011122334444457788886 89999999999999999
Q ss_pred HHHHHHHHHcCCcEEEEcCCCCCCCCCccchHHHHHHHHHHh-----cCCCcEEEecCCCCHHHHHHHHHcCCCEEEech
Q 017718 233 AEDARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKAT-----QGRIPVFLDGGVRRGTDVFKALALGASGIFIGR 307 (367)
Q Consensus 233 ~~~a~~~~~~G~d~i~vs~~gg~~~~~~~~~~~~l~~i~~~~-----~~~~~via~GGI~~~~dv~kal~lGAd~V~ig~ 307 (367)
.++|+.+.++|+|+|+|+||||++++.++++++.|+++++.+ .+++|||++|||+++.|++|+|++|||+|+|||
T Consensus 354 ~e~A~~a~~aGad~I~vs~hgG~~~d~~~~~~~~l~~v~~~v~~~~~~~~ipVia~GGI~~g~Dv~kaLalGAdaV~iGr 433 (511)
T 1kbi_A 354 TEDVIKAAEIGVSGVVLSNHGGRQLDFSRAPIEVLAETMPILEQRNLKDKLEVFVDGGVRRGTDVLKALCLGAKGVGLGR 433 (511)
T ss_dssp HHHHHHHHHTTCSEEEECCTTTTSSTTCCCHHHHHHHHHHHHHTTTCBTTBEEEEESSCCSHHHHHHHHHHTCSEEEECH
T ss_pred HHHHHHHHHcCCCEEEEcCCCCccCCCCCchHHHHHHHHHHHHhhccCCCcEEEEECCCCCHHHHHHHHHcCCCEEEECH
Confidence 999999999999999999999999999999999999999887 348999999999999999999999999999999
Q ss_pred HHHHHhhccChHHHHHHHHHHHHHHHHHHHHhCCCChhhhcccceeeccCC
Q 017718 308 PVVYSLAAEGEKGVRRVLEMLREEFELAMALSGCRSLKEITRDHIVTEWDA 358 (367)
Q Consensus 308 ~~l~~l~~~G~~~v~~~i~~l~~el~~~m~~~G~~si~~l~~~~l~~~~~~ 358 (367)
||++++.+.|++++.++++.+++||+.+|.++|++++.||+++.+......
T Consensus 434 ~~l~~~~~~G~~gv~~~l~~l~~el~~~m~~~G~~~i~el~~~~l~~~~~~ 484 (511)
T 1kbi_A 434 PFLYANSCYGRNGVEKAIEILRDEIEMSMRLLGVTSIAELKPDLLDLSTLK 484 (511)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCBGGGCCGGGEECTTTT
T ss_pred HHHHHHHhcChHHHHHHHHHHHHHHHHHHHHhCCCcHHHHhHHHhhhhhhh
Confidence 999999888999999999999999999999999999999999988765443
|
| >1p4c_A L(+)-mandelate dehydrogenase; TIM barrel, hydroxy acid oxidizing enzyme, oxidoreductase; HET: FMN MES; 1.35A {Pseudomonas putida} SCOP: c.1.4.1 PDB: 1huv_A* 1p5b_A* 3giy_A* 2a7p_A* 2a85_A* 2a7n_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=5.6e-68 Score=524.45 Aligned_cols=352 Identities=43% Similarity=0.745 Sum_probs=313.4
Q ss_pred CCCChHHHHHHHHHhCCccccccccCCCCchhhHHHhHhccccceeeccccCCCCCCccceeEcCeeeccceEeCcccch
Q 017718 3 EITNVMEYEAIAKEKLPKMVFDYYASGAEDQWTLQENRNAFSRILFRPRILIDVSKIDMNTTVLGFKISMPIMIAPTAMQ 82 (367)
Q Consensus 3 ~~~~~~d~~~~A~~~l~~~~~~y~~~ga~~~~t~~~n~~~~~~i~l~pr~l~~~~~vd~st~i~g~~l~~Pi~iAPm~~~ 82 (367)
+++|++|||+.||++||+.+|+|++||++||.|+++|+.+|++|+|+||+|+|++++||+|+|+|+++++||++|||+++
T Consensus 4 ~~~~~~d~~~~A~~~l~~~~~~y~~~ga~~~~t~~~n~~~f~~i~l~pr~L~~~~~~d~st~i~G~~l~~Pv~iap~~~~ 83 (380)
T 1p4c_A 4 NLFNVEDYRKLAQKRLPKMVYDYLEGGAEDEYGVKHNRDVFQQWRFKPKRLVDVSRRSLQAEVLGKRQSMPLLIGPTGLN 83 (380)
T ss_dssp CCSSHHHHHHHHHHHSCHHHHHHHHCCSTTCHHHHHHHHGGGGEEECCCCSCCCSSCBCCEEETTEEESSSEEECCCSCG
T ss_pred cCCCHHHHHHHHHHhCCHHHHHHhCCCCCccHHHHHHHHHHhheeeeccccCCCccCcceeEECCeecCCceEecCcccc
Confidence 46799999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hccCChhhHHHHHHHHHcCCceeecCCCCCCHHHHHhhCCCceEEEEeecCCHHHHHHHHHHHHHcCCcEEEEecCCCCC
Q 017718 83 KMAHPEGEYATARAASAAGTIMTLSSWSTSSVEEVASTGPGIRFFQLYVYKDRNVVAQLVRRAERAGFKAIALTVDTPRL 162 (367)
Q Consensus 83 ~l~~~~~e~~~a~aa~~~G~~~~vs~~~~~~~e~i~~~~~~~~~~QLy~~~d~~~~~~~l~ra~~~G~~ai~itvd~p~~ 162 (367)
++.||++|.+++++|+++|+++++|+++++++|++.....++.|||||+.+ ++...+++++|+++|+++++||+|.|+.
T Consensus 84 ~~~~~~~~~~~a~aa~~~G~~~~vss~s~~~le~i~~~~~~~~~fQly~~~-~~~~~~~i~~a~~aG~~al~vTvd~p~~ 162 (380)
T 1p4c_A 84 GALWPKGDLALARAATKAGIPFVLSTASNMSIEDLARQCDGDLWFQLYVIH-REIAQGMVLKALHTGYTTLVLTTDVAVN 162 (380)
T ss_dssp GGTSTTHHHHHHHHHHHHTCCEEECTTCSSCHHHHHHHCCSCEEEEECCSS-HHHHHHHHHHHHHTTCCEEEEECSCSSC
T ss_pred ccCCCcHHHHHHHHHHHcCCCeecCccccCCHHHHHhccCCCeEEEEEech-HHHHHHHHHHHHHcCCCEEEEeecCccc
Confidence 999999999999999999999999999999999998764578999999888 9999999999999999999999999999
Q ss_pred CchhHHhhhhcCCCCccccccccccccCccccccchhhHHHhhhccCccccHH---HHHhhcCCCEEEEecCCHHHHHHH
Q 017718 163 GRREADIKNRFTLPPFLTLKNFQGLDLGKMDEANDSGLAAYVAGQIDRSLSWK---WLQTITKLPILVKGVLTAEDARIA 239 (367)
Q Consensus 163 g~r~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~---~l~~~~~~Pv~vK~v~~~~~a~~~ 239 (367)
|+|++|+++++..|..+...++..............++..++....+++++|+ ++++.+++||++|++.+.++|+.+
T Consensus 163 g~r~~d~~~g~~~~~~~~~~~~~~~~~~~l~~~~~~ala~~~~~~~~p~~~~~~i~~i~~~~~~Pv~vkgv~t~e~a~~a 242 (380)
T 1p4c_A 163 GYRERDLHNRFKIPPFLTLKNFEGIDLGKMDKANLEMQAALMSRQMDASFNWEALRWLRDLWPHKLLVKGLLSAEDADRC 242 (380)
T ss_dssp CCCHHHHHHTCCCCTTCCCGGGTTCCCSCCSSTTTTTHHHHTSSCCCTTCCHHHHHHHHHHCCSEEEEEEECCHHHHHHH
T ss_pred cchhHHHhcCCCCccccCHHHhhhhhhhccCcccchHHHHHHHhhcCccccHHHHHHHHHhcCCCEEEEecCcHHHHHHH
Confidence 99999999999877654444321000000100111223333444457788886 888989999999999999999999
Q ss_pred HHcCCcEEEEcCCCCCCCCCccchHHHHHHHHHHhcCCCcEEEecCCCCHHHHHHHHHcCCCEEEechHHHHHhhccChH
Q 017718 240 VQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFIGRPVVYSLAAEGEK 319 (367)
Q Consensus 240 ~~~G~d~i~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~~~via~GGI~~~~dv~kal~lGAd~V~ig~~~l~~l~~~G~~ 319 (367)
.++|+|+|+|+||||+++++++++++.++++++.+ +.|||++|||+++.|+.|+|++|||+|++||++++++.+.|++
T Consensus 243 ~~aGad~I~vs~~gg~~~d~~~~~~~~l~~v~~~~--~~pVia~GGI~~~~dv~kal~~GAdaV~iGr~~l~~~~~~g~~ 320 (380)
T 1p4c_A 243 IAEGADGVILSNHGGRQLDCAISPMEVLAQSVAKT--GKPVLIDSGFRRGSDIVKALALGAEAVLLGRATLYGLAARGET 320 (380)
T ss_dssp HHTTCSEEEECCGGGTSCTTCCCGGGTHHHHHHHH--CSCEEECSSCCSHHHHHHHHHTTCSCEEESHHHHHHHHHHHHH
T ss_pred HHcCCCEEEEcCCCCCcCCCCcCHHHHHHHHHHHc--CCeEEEECCCCCHHHHHHHHHhCCcHhhehHHHHHHHHhcCHH
Confidence 99999999999999999999999999999999888 5699999999999999999999999999999999998778999
Q ss_pred HHHHHHHHHHHHHHHHHHHhCCCChhhhcccceeeccC
Q 017718 320 GVRRVLEMLREEFELAMALSGCRSLKEITRDHIVTEWD 357 (367)
Q Consensus 320 ~v~~~i~~l~~el~~~m~~~G~~si~~l~~~~l~~~~~ 357 (367)
++.++++.+++||+.+|.++|++++.|++++.++..+.
T Consensus 321 ~v~~~~~~l~~el~~~m~~~G~~~i~el~~~~l~~~g~ 358 (380)
T 1p4c_A 321 GVDEVLTLLKADIDRTLAQIGCPDITSLSPDYLQNEGV 358 (380)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTCCBGGGCCGGGEEEC--
T ss_pred HHHHHHHHHHHHHHHHHHHhCCCCHHHhccCeEEeccc
Confidence 99999999999999999999999999999999876543
|
| >3sr7_A Isopentenyl-diphosphate delta-isomerase; isopentenyl pyrophosphate isomerase, TIM-barrel; 2.04A {Streptococcus mutans} | Back alignment and structure |
|---|
Probab=100.00 E-value=7.1e-44 Score=348.84 Aligned_cols=270 Identities=19% Similarity=0.305 Sum_probs=212.1
Q ss_pred hccccceeeccccC--CCCCCccceeEcCeeeccceEeCcccchhccCChhhHHHHHHHHHcCCceeecCCCCCCHHH--
Q 017718 41 NAFSRILFRPRILI--DVSKIDMNTTVLGFKISMPIMIAPTAMQKMAHPEGEYATARAASAAGTIMTLSSWSTSSVEE-- 116 (367)
Q Consensus 41 ~~~~~i~l~pr~l~--~~~~vd~st~i~g~~l~~Pi~iAPm~~~~l~~~~~e~~~a~aa~~~G~~~~vs~~~~~~~e~-- 116 (367)
+.||+|+|+|+.|+ +++++||+|+|+|+++++||++|||++++..++++|.+++++|+++|+++++|+++.. +|+
T Consensus 54 ~~fd~i~l~~~~lP~~~~~~vd~st~i~g~~l~~Pi~iapMtgg~~~~~~in~~lA~~a~~~G~~~~vGs~~~~-le~~~ 132 (365)
T 3sr7_A 54 NSFDDIELIHHSLPDYDLAEIDLSTHFAGQDFDFPFYINAMTGGSQKGKEVNEKLAQVADTCGLLFVTGSYSTA-LKNPD 132 (365)
T ss_dssp CGGGGEEECCCSSCCSCGGGCCCCEEETTEEESSSEEEECC----CCCHHHHHHHHHHHHHHTCCEEC------------
T ss_pred CCcceEEEECCCCCcCCcccccceEEECCEEccCceEeccccCCCcchhHHHHHHHHHHHHcCCCeeccccccc-ccCcc
Confidence 58999999999995 7789999999999999999999999999988889999999999999999999998642 222
Q ss_pred -----HHhhCC-CceEEEEeecCCHHHHHHHHHHHHHcCCcEEEEecCCCCCCchhHHhhhhcCCCCccccccccccccC
Q 017718 117 -----VASTGP-GIRFFQLYVYKDRNVVAQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLTLKNFQGLDLG 190 (367)
Q Consensus 117 -----i~~~~~-~~~~~QLy~~~d~~~~~~~l~ra~~~G~~ai~itvd~p~~g~r~~~~~~~~~~p~~~~~~~~~~~~~~ 190 (367)
+.+..| .+.+-.|-..... ++..+.++..|++++.+|++..
T Consensus 133 ~~~~~v~r~~P~~~~ianig~~~~~---e~~~~~ve~~~adal~ihln~~------------------------------ 179 (365)
T 3sr7_A 133 DTSYQVKKSRPHLLLATNIGLDKPY---QAGLQAVRDLQPLFLQVHINLM------------------------------ 179 (365)
T ss_dssp ------------CCEEEEEETTSCH---HHHHHHHHHHCCSCEEEEECHH------------------------------
T ss_pred ccceEehhhCCCCcEEEEeCCCCCH---HHHHHHHHhcCCCEEEEecccc------------------------------
Confidence 222223 3344444322222 3456667789999999999832
Q ss_pred ccccccchhhHHHhhhccCccc-cHH----HHHhhcCCCEEEEec---CCHHHHHHHHHcCCcEEEEcCCCCCCC-----
Q 017718 191 KMDEANDSGLAAYVAGQIDRSL-SWK----WLQTITKLPILVKGV---LTAEDARIAVQAGAAGIIVSNHGARQL----- 257 (367)
Q Consensus 191 ~~~~~~~~~~~~~~~~~~d~~~-~~~----~l~~~~~~Pv~vK~v---~~~~~a~~~~~~G~d~i~vs~~gg~~~----- 257 (367)
++.+++..++++ +|. ++++.+++||++|++ .++++|+.+.++|+|+|+|+||||+++
T Consensus 180 ----------qe~~~p~Gd~~~~~~~~~I~~l~~~~~~PVivK~vg~g~s~e~A~~l~~aGad~I~V~g~GGt~~a~ie~ 249 (365)
T 3sr7_A 180 ----------QELLMPEGEREFRSWKKHLSDYAKKLQLPFILKEVGFGMDVKTIQTAIDLGVKTVDISGRGGTSFAYIEN 249 (365)
T ss_dssp ----------HHHTSSSSCCCCHHHHHHHHHHHHHCCSCEEEEECSSCCCHHHHHHHHHHTCCEEECCCBC---------
T ss_pred ----------ccccCCCCCCcHHHHHHHHHHHHHhhCCCEEEEECCCCCCHHHHHHHHHcCCCEEEEeCCCCcccchhhc
Confidence 112222335555 562 888889999999998 799999999999999999999999864
Q ss_pred ----------CCccchHHHHHHHHHHhcCCCcEEEecCCCCHHHHHHHHHcCCCEEEechHHHHHhhccChHHHHHHHHH
Q 017718 258 ----------DYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFIGRPVVYSLAAEGEKGVRRVLEM 327 (367)
Q Consensus 258 ----------~~~~~~~~~l~~i~~~~~~~~~via~GGI~~~~dv~kal~lGAd~V~ig~~~l~~l~~~G~~~v~~~i~~ 327 (367)
+++.++.+.|+++. .+.+++|||++|||+++.|++|+|++|||+|++||+|++++.+.|++++.++++.
T Consensus 250 ~r~~~~~~~~~~g~pt~~~L~~v~-~~~~~ipvia~GGI~~g~Dv~KaLalGAdaV~ig~~~l~a~~~~G~~~v~~~l~~ 328 (365)
T 3sr7_A 250 RRGGNRSYLNQWGQTTAQVLLNAQ-PLMDKVEILASGGIRHPLDIIKALVLGAKAVGLSRTMLELVEQHSVHEVIAIVNG 328 (365)
T ss_dssp -----CGGGTTCSCBHHHHHHHHG-GGTTTSEEEECSSCCSHHHHHHHHHHTCSEEEESHHHHHHHHHSCHHHHHHHHHH
T ss_pred cccccccccccccccHHHHHHHHH-HhcCCCeEEEeCCCCCHHHHHHHHHcCCCEEEECHHHHHHHHhcChHHHHHHHHH
Confidence 67889999998764 4445899999999999999999999999999999999999988999999999999
Q ss_pred HHHHHHHHHHHhCCCChhhhcccceeec
Q 017718 328 LREEFELAMALSGCRSLKEITRDHIVTE 355 (367)
Q Consensus 328 l~~el~~~m~~~G~~si~~l~~~~l~~~ 355 (367)
+++||+.+|.++|+++++||++..++..
T Consensus 329 l~~eL~~~m~~~G~~si~eL~~~~~~~~ 356 (365)
T 3sr7_A 329 WKEDLRLIMCALNCQTIAELRNVDYLLY 356 (365)
T ss_dssp HHHHHHHHHHHTTCSSTGGGGGCCEEEC
T ss_pred HHHHHHHHHHHhCCcCHHHhccCCEEEc
Confidence 9999999999999999999999877654
|
| >1vcf_A Isopentenyl-diphosphate delta-isomerase; TIM barrel, structural genomics, riken structural genomics/P initiative, RSGI; HET: FMN; 2.60A {Thermus thermophilus} SCOP: c.1.4.1 PDB: 1vcg_A* 3dh7_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=2.7e-43 Score=342.43 Aligned_cols=278 Identities=27% Similarity=0.296 Sum_probs=209.4
Q ss_pred ccccccCCCCchhhHHHhHhccccceeeccccC--CCCCCccceeEcCeeeccceEeCcccchhccCChh---hHHHHHH
Q 017718 22 VFDYYASGAEDQWTLQENRNAFSRILFRPRILI--DVSKIDMNTTVLGFKISMPIMIAPTAMQKMAHPEG---EYATARA 96 (367)
Q Consensus 22 ~~~y~~~ga~~~~t~~~n~~~~~~i~l~pr~l~--~~~~vd~st~i~g~~l~~Pi~iAPm~~~~l~~~~~---e~~~a~a 96 (367)
-.+|+.....++.|+++|+.+|++|+|+||+|+ +++++||+|+|+|+++++||++|||+++ ++.+ +.+++++
T Consensus 7 k~~hi~~~~~~~~~~~~~~~~f~~~~l~p~~l~~~~~~~~d~~~~i~g~~l~~P~~iapm~g~---~~~~~~~~~~la~~ 83 (332)
T 1vcf_A 7 KRKHLEACLEGEVAYQKTTTGLEGFRLRYQALAGLALSEVDLTTPFLGKTLKAPFLIGAMTGG---EENGERINLALAEA 83 (332)
T ss_dssp ----------------CCCCSGGGEEECCCTTCCCCGGGCCCCEEETTEEESSSEEECCCC------CCHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCcccccchhhhhhcEEehhhCCCCCCCCCCcceEECCcccCCceEEeccccC---CcchhHHHHHHHHH
Confidence 358999999999999999999999999999999 7899999999999999999999999864 4444 4799999
Q ss_pred HHHcCCceeecCCCCCCHHHH--------HhhCC-CceE-----EEEeecCCHHHHHHHHHHHHHcCCcEEEEecCCCCC
Q 017718 97 ASAAGTIMTLSSWSTSSVEEV--------ASTGP-GIRF-----FQLYVYKDRNVVAQLVRRAERAGFKAIALTVDTPRL 162 (367)
Q Consensus 97 a~~~G~~~~vs~~~~~~~e~i--------~~~~~-~~~~-----~QLy~~~d~~~~~~~l~ra~~~G~~ai~itvd~p~~ 162 (367)
|+++|+++++|++++. +|+. ....+ .|.+ .|++ ..+++...++ ++..+++++.+++++..
T Consensus 84 a~~~G~~~~~~~~~~~-le~~~~~~~~ql~~~~~d~pv~~~~~~~q~~-~~~~~~~~~a---~~~~~~~a~~i~~n~~~- 157 (332)
T 1vcf_A 84 AEALGVGMMLGSGRIL-LERPEALRSFRVRKVAPKALLIANLGLAQLR-RYGRDDLLRL---VEMLEADALAFHVNPLQ- 157 (332)
T ss_dssp HHHHTCEEEEEECHHH-HHCTTTHHHHCCTTTCSSSCEEEEEEGGGGG-TCCHHHHHHH---HHHHTCSEEEEECCHHH-
T ss_pred HHHcCCCEEeCCchhc-ccCCCccceEEeeccCCCceeecccChhhhh-ccChHHHHHH---HhhcCCCceeeccchHH-
Confidence 9999999999999764 4431 00111 2221 2332 2334444333 34457888888776310
Q ss_pred CchhHHhhhhcCCCCccccccccccccCccccccchhhHHHhhhccCccc--cHH---HHHhhcCCCEEEEec---CCHH
Q 017718 163 GRREADIKNRFTLPPFLTLKNFQGLDLGKMDEANDSGLAAYVAGQIDRSL--SWK---WLQTITKLPILVKGV---LTAE 234 (367)
Q Consensus 163 g~r~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~--~~~---~l~~~~~~Pv~vK~v---~~~~ 234 (367)
+.++ ..+.++ .|+ ++|+ +++||++|++ .+++
T Consensus 158 ---------------------------------------~~~~-~~~~~~~~~~~~i~~vr~-~~~Pv~vK~v~~g~~~e 196 (332)
T 1vcf_A 158 ---------------------------------------EAVQ-RGDTDFRGLVERLAELLP-LPFPVMVKEVGHGLSRE 196 (332)
T ss_dssp ---------------------------------------HHHT-TSCCCCTTHHHHHHHHCS-CSSCEEEECSSSCCCHH
T ss_pred ---------------------------------------HHhc-CCCccHHHHHHHHHHHHc-CCCCEEEEecCCCCCHH
Confidence 0111 112222 233 8889 9999999988 8999
Q ss_pred HHHHHHHcCCcEEEEcCCCC---------CC---------CCCccchHHHHHHHHHHhcCCCcEEEecCCCCHHHHHHHH
Q 017718 235 DARIAVQAGAAGIIVSNHGA---------RQ---------LDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKAL 296 (367)
Q Consensus 235 ~a~~~~~~G~d~i~vs~~gg---------~~---------~~~~~~~~~~l~~i~~~~~~~~~via~GGI~~~~dv~kal 296 (367)
+|+.+.++|+|+|+|+|||| ++ .++++++++.|+++++.++ ++|||++|||+++.|++|+|
T Consensus 197 ~a~~~~~~G~d~I~vs~~ggt~~~~~~~~r~~~~~~~~~~~~~g~~~~~~l~~v~~~~~-~ipvia~GGI~~~~d~~kal 275 (332)
T 1vcf_A 197 AALALRDLPLAAVDVAGAGGTSWARVEEWVRFGEVRHPELCEIGIPTARAILEVREVLP-HLPLVASGGVYTGTDGAKAL 275 (332)
T ss_dssp HHHHHTTSCCSEEECCCBTSCCHHHHHHTC--------CCTTCSCBHHHHHHHHHHHCS-SSCEEEESSCCSHHHHHHHH
T ss_pred HHHHHHHcCCCEEEeCCCCCCcchhHHHhhccccchhhhHhhccccHHHHHHHHHHhcC-CCeEEEECCCCCHHHHHHHH
Confidence 99999999999999999988 44 6788999999999998874 69999999999999999999
Q ss_pred HcCCCEEEechHHHHHhhccChHHHHHHHHHHHHHHHHHHHHhCCCChhhhcccc
Q 017718 297 ALGASGIFIGRPVVYSLAAEGEKGVRRVLEMLREEFELAMALSGCRSLKEITRDH 351 (367)
Q Consensus 297 ~lGAd~V~ig~~~l~~l~~~G~~~v~~~i~~l~~el~~~m~~~G~~si~~l~~~~ 351 (367)
++|||+|++||+|++++ +.|++++.++++.+++||+.+|.++|+++++|++++.
T Consensus 276 ~~GAd~V~igr~~l~~~-~~G~~gv~~~~~~l~~el~~~m~~~G~~~i~el~~~~ 329 (332)
T 1vcf_A 276 ALGADLLAVARPLLRPA-LEGAERVAAWIGDYLEELRTALFAIGARNPKEARGRV 329 (332)
T ss_dssp HHTCSEEEECGGGHHHH-TTCHHHHHHHHHHHHHHHHHHHHHHTCSSGGGGTTCE
T ss_pred HhCCChHhhhHHHHHHH-hccHHHHHHHHHHHHHHHHHHHHHhCCCCHHHHhhhh
Confidence 99999999999999998 7899999999999999999999999999999999764
|
| >1p0k_A Isopentenyl-diphosphate delta-isomerase; terpene biosynthesis, dimethylallyl diphosphate, flavoprotein; 1.90A {Bacillus subtilis} SCOP: c.1.4.1 PDB: 1p0n_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.7e-40 Score=324.76 Aligned_cols=271 Identities=25% Similarity=0.336 Sum_probs=220.0
Q ss_pred hHhccccceeeccccC--CCCCCccceeEcCeeeccceEeCcccchh-ccCChhhHHHHHHHHHcCCceeecCCCCCCHH
Q 017718 39 NRNAFSRILFRPRILI--DVSKIDMNTTVLGFKISMPIMIAPTAMQK-MAHPEGEYATARAASAAGTIMTLSSWSTSSVE 115 (367)
Q Consensus 39 n~~~~~~i~l~pr~l~--~~~~vd~st~i~g~~l~~Pi~iAPm~~~~-l~~~~~e~~~a~aa~~~G~~~~vs~~~~~~~e 115 (367)
++.+|++|+|+||+|+ +++++||+|+|+|.++++||++|||++.. ..++++|.+++++|.++|+++++|++++. ++
T Consensus 21 ~~~~f~~~~l~p~~l~~~~~~~~d~~~~i~g~~~~~P~~iApm~g~~~~~~~~~~~~~a~aa~~~G~~~~~~~~~~~-l~ 99 (349)
T 1p0k_A 21 RETGLDDITFVHVSLPDLALEQVDISTKIGELSSSSPIFINAMTGGGGKLTYEINKSLARAASQAGIPLAVGSQMSA-LK 99 (349)
T ss_dssp CCCSGGGEEECCCSCCCCCGGGCBCCEEETTEEESCSEEEECCCCSCHHHHHHHHHHHHHHHHHHTCCEECCCCTTT-TT
T ss_pred ccCccceEEEEccccCCCCcccCCceeEECCcccCCceEEcCccccchhhhhHHHHHHHHHHHHcCCcEEeccchhc-cc
Confidence 3568999999999998 77899999999999999999999996544 44466789999999999999999998654 32
Q ss_pred H---------HHhhCC-CceEEEEeecCCHHHHHHHHHHHHHcCCcEEEEecCCCCCCchhHHhhhhcCCCCcccccccc
Q 017718 116 E---------VASTGP-GIRFFQLYVYKDRNVVAQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLTLKNFQ 185 (367)
Q Consensus 116 ~---------i~~~~~-~~~~~QLy~~~d~~~~~~~l~ra~~~G~~ai~itvd~p~~g~r~~~~~~~~~~p~~~~~~~~~ 185 (367)
+ +....+ .|.+.|+..+.+.+... +.++.+|++++.+|++||....+ |
T Consensus 100 ~~~~~~~~~~~~~~~~~~pv~~~i~~~~~~~~~~---~~~~~~gad~i~i~~~~~~~~~~----------~--------- 157 (349)
T 1p0k_A 100 DPSERLSYEIVRKENPNGLIFANLGSEATAAQAK---EAVEMIGANALQIHLNVIQEIVM----------P--------- 157 (349)
T ss_dssp CHHHHHHHHHHHHHCSSSCEEEEEETTCCHHHHH---HHHHHTTCSEEEEEECTTTTC----------------------
T ss_pred CcccccceehhhhhCCCceeEEeecCCCCHHHHH---HHHHhcCCCeEEecccchhhhcC----------C---------
Confidence 2 222233 57888987545655433 44667899999999999752000 0
Q ss_pred ccccCccccccchhhHHHhhhccCcccc-H----HHHHhhcCCCEEEEec---CCHHHHHHHHHcCCcEEEEcCCCC---
Q 017718 186 GLDLGKMDEANDSGLAAYVAGQIDRSLS-W----KWLQTITKLPILVKGV---LTAEDARIAVQAGAAGIIVSNHGA--- 254 (367)
Q Consensus 186 ~~~~~~~~~~~~~~~~~~~~~~~d~~~~-~----~~l~~~~~~Pv~vK~v---~~~~~a~~~~~~G~d~i~vs~~gg--- 254 (367)
..++.++ | +++++.+++||++|++ .+.++++.+.++|+|+|+++||||
T Consensus 158 ---------------------~~~~~~~~~~~~i~~vr~~~~~Pv~vK~~~~~~~~~~a~~a~~~Gad~I~v~~~ggt~~ 216 (349)
T 1p0k_A 158 ---------------------EGDRSFSGALKRIEQICSRVSVPVIVKEVGFGMSKASAGKLYEAGAAAVDIGGYGGTNF 216 (349)
T ss_dssp --------------------------CTTHHHHHHHHHHHCSSCEEEEEESSCCCHHHHHHHHHHTCSEEEEEC------
T ss_pred ---------------------CCCcchHHHHHHHHHHHHHcCCCEEEEecCCCCCHHHHHHHHHcCCCEEEEcCCCCcch
Confidence 0123331 3 3888888999999987 789999999999999999999998
Q ss_pred ------CC-------CCCccchHHHHHHHHHHhcCCCcEEEecCCCCHHHHHHHHHcCCCEEEechHHHHHhhccChHHH
Q 017718 255 ------RQ-------LDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFIGRPVVYSLAAEGEKGV 321 (367)
Q Consensus 255 ------~~-------~~~~~~~~~~l~~i~~~~~~~~~via~GGI~~~~dv~kal~lGAd~V~ig~~~l~~l~~~G~~~v 321 (367)
++ .++++++.+.|+++++.+ .++|||++|||++++|+.|++++|||+|++||+|++.+.+.|++++
T Consensus 217 ~~~e~~r~~~~~~~~~~~g~~~~~~l~~v~~~~-~~ipvia~GGI~~~~d~~k~l~~GAd~V~iG~~~l~~~~~~g~~~~ 295 (349)
T 1p0k_A 217 SKIENLRRQRQISFFNSWGISTAASLAEIRSEF-PASTMIASGGLQDALDVAKAIALGASCTGMAGHFLKALTDSGEEGL 295 (349)
T ss_dssp ---------CCGGGGTTCSCCHHHHHHHHHHHC-TTSEEEEESSCCSHHHHHHHHHTTCSEEEECHHHHHHHHHHHHHHH
T ss_pred hhHHHhhcccchhhhhccCccHHHHHHHHHHhc-CCCeEEEECCCCCHHHHHHHHHcCCCEEEEcHHHHHHHhhcCHHHH
Confidence 33 467889999999998876 4799999999999999999999999999999999998877788999
Q ss_pred HHHHHHHHHHHHHHHHHhCCCChhhhcccceee
Q 017718 322 RRVLEMLREEFELAMALSGCRSLKEITRDHIVT 354 (367)
Q Consensus 322 ~~~i~~l~~el~~~m~~~G~~si~~l~~~~l~~ 354 (367)
.++++.+.+||+.+|.++|++++.|++++.+..
T Consensus 296 ~~~~~~~~~~l~~~m~~~G~~~i~el~~~~~~~ 328 (349)
T 1p0k_A 296 LEEIQLILEELKLIMTVLGARTIADLQKAPLVI 328 (349)
T ss_dssp HHHHHHHHHHHHHHHHHHTCCBHHHHTTCCEEE
T ss_pred HHHHHHHHHHHHHHHHHhCCCCHHHHhhCCeec
Confidence 999999999999999999999999999998775
|
| >3vkj_A Isopentenyl-diphosphate delta-isomerase; type 2 isopentenyl diphosphate isomerase; HET: FNR; 1.70A {Sulfolobus shibatae} PDB: 2zrv_A* 2zrw_A* 2zrx_A* 2zry_A* 2zrz_A* 3b03_A* 3b04_A* 3b05_A* 3b06_A* 2zru_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=2.7e-40 Score=324.40 Aligned_cols=270 Identities=21% Similarity=0.246 Sum_probs=216.4
Q ss_pred hccccceeeccccC--CCCCCccceeEcCeeeccceEeCcccchhccCChhhHHHHHHHHHcCCceeecCCCCC----CH
Q 017718 41 NAFSRILFRPRILI--DVSKIDMNTTVLGFKISMPIMIAPTAMQKMAHPEGEYATARAASAAGTIMTLSSWSTS----SV 114 (367)
Q Consensus 41 ~~~~~i~l~pr~l~--~~~~vd~st~i~g~~l~~Pi~iAPm~~~~l~~~~~e~~~a~aa~~~G~~~~vs~~~~~----~~ 114 (367)
+.||+|+|+|+.|+ +.+++||+|+|+|++++.||++|||++++....+.|..++++|+++|+++++|+++.. ..
T Consensus 27 ~~~~~v~l~~~~lp~~~~~~vd~st~~~g~~l~~Pv~ia~MtGgt~~~~~in~~la~~a~~~G~~~~vGs~~~~l~~~~~ 106 (368)
T 3vkj_A 27 TFLNDVILVHQGFPGISFSEINTKTKFFRKEISVPVMVTGMTGGRNELGRINKIIAEVAEKFGIPMGVGSQRVAIEKAEA 106 (368)
T ss_dssp CSGGGEEECCCSSCBSBGGGCBCCEEETTEEESSSEEECCCCCSSHHHHHHHHHHHHHHHHHTCCEECCCCHHHHHCGGG
T ss_pred CCcceEEEEcCCCCccCcccccceeEECCEeccCCeEEecCCCCCchhhHHHHHHHHHHHHhCCCeeeecchhccCCHHH
Confidence 57999999999999 7899999999999999999999999988765556778899999999999999999421 11
Q ss_pred -H--H-HHhhCC-CceEEEEee----c-CCHHHHHHHHHHHHHcCCcEEEEecCCCCCCchhHHhhhhcCCCCccccccc
Q 017718 115 -E--E-VASTGP-GIRFFQLYV----Y-KDRNVVAQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLTLKNF 184 (367)
Q Consensus 115 -e--~-i~~~~~-~~~~~QLy~----~-~d~~~~~~~l~ra~~~G~~ai~itvd~p~~g~r~~~~~~~~~~p~~~~~~~~ 184 (367)
+ + +.+..| .+.+-.+.. . .+.+...+. ++..+++++.|+++. .
T Consensus 107 ~~s~~~vr~~ap~~~~~anlg~~ql~~~~~~~~~~~a---v~~~~a~al~Ihln~-~----------------------- 159 (368)
T 3vkj_A 107 RESFAIVRKVAPTIPIIANLGMPQLVKGYGLKEFQDA---IQMIEADAIAVHLNP-A----------------------- 159 (368)
T ss_dssp SHHHHHHHHHCSSSCEEEEEEGGGGGTTCCHHHHHHH---HHHTTCSEEEEECCH-H-----------------------
T ss_pred HhhHHHHHHhCcCcceecCcCeeecCCCCCHHHHHHH---HHHhcCCCeEEEecc-h-----------------------
Confidence 1 1 333455 334433332 2 344544333 444588888888771 1
Q ss_pred cccccCccccccchhhHHHhhhccCcccc---H---HHHHhhcCCCEEEEec---CCHHHHHHHHHcCCcEEEEcCCCCC
Q 017718 185 QGLDLGKMDEANDSGLAAYVAGQIDRSLS---W---KWLQTITKLPILVKGV---LTAEDARIAVQAGAAGIIVSNHGAR 255 (367)
Q Consensus 185 ~~~~~~~~~~~~~~~~~~~~~~~~d~~~~---~---~~l~~~~~~Pv~vK~v---~~~~~a~~~~~~G~d~i~vs~~gg~ 255 (367)
.+.+++..++++. | +++++.+++||++|++ .++++|+.+.++|+|+|+|+||||+
T Consensus 160 ----------------~~~~~p~g~~~~~~~~~~~i~~i~~~~~vPVivK~vG~g~s~~~A~~l~~aGad~I~V~g~GGt 223 (368)
T 3vkj_A 160 ----------------QEVFQPEGEPEYQIYALEKLRDISKELSVPIIVKESGNGISMETAKLLYSYGIKNFDTSGQGGT 223 (368)
T ss_dssp ----------------HHHHSSSCCCBCBTHHHHHHHHHHTTCSSCEEEECSSSCCCHHHHHHHHHTTCCEEECCCBTSB
T ss_pred ----------------hhhhCCCCCchhhHHHHHHHHHHHHHcCCCEEEEeCCCCCCHHHHHHHHhCCCCEEEEeCCCCC
Confidence 1112222234332 2 3888889999999988 7999999999999999999999993
Q ss_pred ---------C--------------CCCccchHHHHHHHHHHhcCCCcEEEecCCCCHHHHHHHHHcCCCEEEechHHHHH
Q 017718 256 ---------Q--------------LDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFIGRPVVYS 312 (367)
Q Consensus 256 ---------~--------------~~~~~~~~~~l~~i~~~~~~~~~via~GGI~~~~dv~kal~lGAd~V~ig~~~l~~ 312 (367)
+ .+++.++...|.++++.++ ++|||++|||+++.|++|+|++|||+|++||||+++
T Consensus 224 ~~~~iE~~R~~~~~~~~~~~~~~~~~~g~pt~~~l~~v~~~~~-~ipvia~GGI~~~~d~~kal~lGA~~v~ig~~~l~~ 302 (368)
T 3vkj_A 224 NWIAIEMIRDIRRGNWKAESAKNFLDWGVPTAASIMEVRYSVP-DSFLVGSGGIRSGLDAAKAIALGADIAGMALPVLKS 302 (368)
T ss_dssp CHHHHHHHHHHHTTCTHHHHHHHTTTCSCBHHHHHHHHHHHST-TCEEEEESSCCSHHHHHHHHHHTCSEEEECHHHHHH
T ss_pred cccchhhhhcccccccchhhccccccccccHHHHHHHHHHHcC-CCcEEEECCCCCHHHHHHHHHcCCCEEEEcHHHHHH
Confidence 2 2457888899999988774 699999999999999999999999999999999998
Q ss_pred hhccChHHHHHHHHHHHHHHHHHHHHhCCCChhhhcccceeec
Q 017718 313 LAAEGEKGVRRVLEMLREEFELAMALSGCRSLKEITRDHIVTE 355 (367)
Q Consensus 313 l~~~G~~~v~~~i~~l~~el~~~m~~~G~~si~~l~~~~l~~~ 355 (367)
+. .|++++.++++.+.+||+.+|..+|+++++||++..+...
T Consensus 303 ~~-~G~~~v~~~l~~l~~eL~~~m~~~G~~~i~el~~~~l~~~ 344 (368)
T 3vkj_A 303 AI-EGKESLEQFFRKIIFELKAAMMLTGSKDVDALKKTSIVIL 344 (368)
T ss_dssp HH-HCHHHHHHHHHHHHHHHHHHHHHTTCCBHHHHHTCCEEEC
T ss_pred Hh-cChHHHHHHHHHHHHHHHHHHHHhCCCCHHHhccCCEEec
Confidence 76 6999999999999999999999999999999998887654
|
| >2qr6_A IMP dehydrogenase/GMP reductase; NP_599840.1, G reductase domain, structural genomics, joint center for STR genomics, JCSG; HET: MSE; 1.50A {Corynebacterium glutamicum atcc 13032} | Back alignment and structure |
|---|
Probab=100.00 E-value=7.9e-42 Score=339.20 Aligned_cols=311 Identities=18% Similarity=0.222 Sum_probs=232.4
Q ss_pred HHhCCccccccccCCCCchhhHHHhHhccccceeecc-ccCCCCCCccceeEcCeeeccceEeCcccchhccCChhhHHH
Q 017718 15 KEKLPKMVFDYYASGAEDQWTLQENRNAFSRILFRPR-ILIDVSKIDMNTTVLGFKISMPIMIAPTAMQKMAHPEGEYAT 93 (367)
Q Consensus 15 ~~~l~~~~~~y~~~ga~~~~t~~~n~~~~~~i~l~pr-~l~~~~~vd~st~i~g~~l~~Pi~iAPm~~~~l~~~~~e~~~ 93 (367)
..+||+..|+|+.+|++++ ++|..+||+|+|+|+ .+++++++||+|+|+|+++++||++|||++ +.+ .++
T Consensus 13 ~~~~~~~~~~~~~~~~~~~---~~~~~~fd~v~l~p~~~~~~~~~vdlst~l~g~~l~~Pii~Apm~g--~~~----~~~ 83 (393)
T 2qr6_A 13 ENLYFQGMRDHVEIGIGRE---ARRTYSLDDISVVSSRRTRSSKDVDTTWHIDAYKFDLPFMNHPSDA--LAS----PEF 83 (393)
T ss_dssp -CHHHHHHHHEEEEETTEE---EECCCCGGGEEECCCSCCCCGGGCBCCEEETTEEESSSEEECCCTT--TCC----HHH
T ss_pred ccccccchHHHHhcccccc---cccCCChhhEEEccCCCCCChhHCCceeEEcccccCCCeEeCCCCC--ccc----HHH
Confidence 3578999999999999999 468899999999998 888999999999999999999999999984 334 479
Q ss_pred HHHHHHcCCceeecC--------CCCCCHHHHHhhCC-------CceEEEEeecC-CHHHHHHHHHHHHHcCCcEEEEec
Q 017718 94 ARAASAAGTIMTLSS--------WSTSSVEEVASTGP-------GIRFFQLYVYK-DRNVVAQLVRRAERAGFKAIALTV 157 (367)
Q Consensus 94 a~aa~~~G~~~~vs~--------~~~~~~e~i~~~~~-------~~~~~QLy~~~-d~~~~~~~l~ra~~~G~~ai~itv 157 (367)
++++.+.|.++++++ .++.++|++.+... .+.|+|+|... |++...+++++++++|+.+++ .+
T Consensus 84 a~a~a~~G~~gvl~~~~~~~~~~~~~~~~eeia~~~~~~d~~~g~~~~~q~~~~~~d~~~~~~~i~~~~~~g~~v~~-~v 162 (393)
T 2qr6_A 84 VIEMGKQGGLGVINAEGLWGRHADLDEAIAKVIAAYEEGDQAAATRTLQELHAAPLDTELLSERIAQVRDSGEIVAV-RV 162 (393)
T ss_dssp HHHHHHTTSBCEEETTSSTTTCSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHTTSCCEE-EE
T ss_pred HHHHHHcCCcEEEEecceecccCCchhHHHHHHHHHHhcCCCccchhhhhcccccCCHHHHHHHHHHHhhcCCeEEE-Ee
Confidence 999999999999986 22235566654322 35799998655 999999999999999988765 22
Q ss_pred CCCCCCchhHHhhhhcCCCCccccccccccccCccccccchhhHHHhhhccCccccH---HHHHhhcCCCEEEEecCCHH
Q 017718 158 DTPRLGRREADIKNRFTLPPFLTLKNFQGLDLGKMDEANDSGLAAYVAGQIDRSLSW---KWLQTITKLPILVKGVLTAE 234 (367)
Q Consensus 158 d~p~~g~r~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~---~~l~~~~~~Pv~vK~v~~~~ 234 (367)
.+.+..+....+.-. +... ..++.... .+++ ..+..+| .++++.+++||++|++.+++
T Consensus 163 ----~~~~~~e~a~~~~~a-gad~---i~i~~~~~-------~~~~----~~~~~~~~~i~~l~~~~~~pvi~ggi~t~e 223 (393)
T 2qr6_A 163 ----SPQNVREIAPIVIKA-GADL---LVIQGTLI-------SAEH----VNTGGEALNLKEFIGSLDVPVIAGGVNDYT 223 (393)
T ss_dssp ----CTTTHHHHHHHHHHT-TCSE---EEEECSSC-------CSSC----CCC-----CHHHHHHHCSSCEEEECCCSHH
T ss_pred ----CCccHHHHHHHHHHC-CCCE---EEEeCCcc-------cccc----CCCcccHHHHHHHHHhcCCCEEECCcCCHH
Confidence 223444444333100 0000 00000000 0001 1122244 38999999999999999999
Q ss_pred HHHHHHHcCCcEEEEcC--CCCCCCC-CccchHHHHHHHHHH-------hcCC-CcEEEecCCCCHHHHHHHHHcCCCEE
Q 017718 235 DARIAVQAGAAGIIVSN--HGARQLD-YVPATIMALEEVVKA-------TQGR-IPVFLDGGVRRGTDVFKALALGASGI 303 (367)
Q Consensus 235 ~a~~~~~~G~d~i~vs~--~gg~~~~-~~~~~~~~l~~i~~~-------~~~~-~~via~GGI~~~~dv~kal~lGAd~V 303 (367)
+|+.+.++|+|+|+|++ |++++++ +++++++.|+++++. ++++ +|||++|||+++.|++|+|++|||+|
T Consensus 224 ~a~~~~~~Gad~i~vg~Gg~~~~~~~~~g~~~~~~l~~v~~~~~~~~~~~~~~~ipvia~GGI~~~~dv~kalalGA~~V 303 (393)
T 2qr6_A 224 TALHMMRTGAVGIIVGGGENTNSLALGMEVSMATAIADVAAARRDYLDETGGRYVHIIADGSIENSGDVVKAIACGADAV 303 (393)
T ss_dssp HHHHHHTTTCSEEEESCCSCCHHHHTSCCCCHHHHHHHHHHHHHHHHHHHTSCCCEEEECSSCCSHHHHHHHHHHTCSEE
T ss_pred HHHHHHHcCCCEEEECCCcccccccCCCCCChHHHHHHHHHHHHHhHhhcCCcceEEEEECCCCCHHHHHHHHHcCCCEE
Confidence 99999999999999977 5555544 468999999999877 5334 99999999999999999999999999
Q ss_pred EechHH-----------HHHhhccCh---HH--------------HHHHH----------HHHHHHHHHHHHHhCCCChh
Q 017718 304 FIGRPV-----------VYSLAAEGE---KG--------------VRRVL----------EMLREEFELAMALSGCRSLK 345 (367)
Q Consensus 304 ~ig~~~-----------l~~l~~~G~---~~--------------v~~~i----------~~l~~el~~~m~~~G~~si~ 345 (367)
++||+| +|++++.|. +| +.+++ +.+++||+..|.++|+++++
T Consensus 304 ~iG~~~l~~~es~~~~~~~g~~~~~~~~~~Gv~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~el~~~m~~~G~~~i~ 383 (393)
T 2qr6_A 304 VLGSPLARAEEAAGKGYFWPAVAAHPRFPRGVVTESVDLDEAAPSLEQILHGPSTMPWGVENFEGGLKRALAKCGYTDLK 383 (393)
T ss_dssp EECGGGGGSTTCTTTTEECCGGGGCSSSCCCCCEECC----CCCCHHHHHHCCCSCTTSSSCHHHHHHHHHHHHTCSBHH
T ss_pred EECHHHHcCCCCCCceEEEecccCcccCCCccccccccccccchhHHHHhccchhHHHHHHHHHHHHHHHHHHhCCCCHH
Confidence 999996 455544332 22 23333 36689999999999999999
Q ss_pred hhcccceee
Q 017718 346 EITRDHIVT 354 (367)
Q Consensus 346 ~l~~~~l~~ 354 (367)
||++..+..
T Consensus 384 el~~~~~~~ 392 (393)
T 2qr6_A 384 SFQKVSLHV 392 (393)
T ss_dssp HHTTCCEEE
T ss_pred HHhhccEec
Confidence 999887754
|
| >1ypf_A GMP reductase; GUAC, purines, pyrimidines, nucleosides, nucleotides, nucleo nucleoside interconversions, spine, structural genomics; 1.80A {Bacillus anthracis} PDB: 2a1y_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=8.5e-36 Score=290.07 Aligned_cols=262 Identities=18% Similarity=0.204 Sum_probs=188.6
Q ss_pred hHHHhHhccccceeeccc--cCCCCCCccceeEcCeeeccceEeCcccchhccCChhhHHHHHHHHH-cCCceeecCCCC
Q 017718 35 TLQENRNAFSRILFRPRI--LIDVSKIDMNTTVLGFKISMPIMIAPTAMQKMAHPEGEYATARAASA-AGTIMTLSSWST 111 (367)
Q Consensus 35 t~~~n~~~~~~i~l~pr~--l~~~~~vd~st~i~g~~l~~Pi~iAPm~~~~l~~~~~e~~~a~aa~~-~G~~~~vs~~~~ 111 (367)
-.-+|..+||+|.|+||+ +.+++++||+|+|+|+++++||++|||++.+ +..+++++.+ .|+.+...++..
T Consensus 8 ~~~~~~~~fd~v~l~p~~~~~~~~~~vdl~t~i~g~~l~~Pi~~a~mag~s------~~~la~a~~~~gg~g~~~~~~~~ 81 (336)
T 1ypf_A 8 HHMGNVFDYEDIQLIPAKCIVNSRSECDTTVTLGKHKFKLPVVPANMQTII------DERIATYLAENNYFYIMHRFQPE 81 (336)
T ss_dssp ----CCCCGGGEEECCCCCCCSSGGGCBCCEEETTEEESSSEEECSSTTTC------CHHHHHHHHHTTCCCCCCCSSGG
T ss_pred ccccccCCcceEEEecccCCCCCcccCcceEEECCEEecCcEEECCCCCCC------hHHHHHHHHhCCCEEEecCCCCH
Confidence 346789999999999999 5789999999999999999999999998764 4667765444 455555544322
Q ss_pred CCHHHHHhh--CCCceEEEEeecCCHHHHHHHHHHHHHcC--CcEEEEecCCCCCCchhHHhhhhcCCCCcccccccccc
Q 017718 112 SSVEEVAST--GPGIRFFQLYVYKDRNVVAQLVRRAERAG--FKAIALTVDTPRLGRREADIKNRFTLPPFLTLKNFQGL 187 (367)
Q Consensus 112 ~~~e~i~~~--~~~~~~~QLy~~~d~~~~~~~l~ra~~~G--~~ai~itvd~p~~g~r~~~~~~~~~~p~~~~~~~~~~~ 187 (367)
...+.+.+. ..-+..+|+ +.+++.. +.++++.++| ++++.+++.. |
T Consensus 82 ~~~~~i~~~~~~g~~v~v~~--g~~~~~~-~~a~~~~~~g~~~~~i~i~~~~---G------------------------ 131 (336)
T 1ypf_A 82 KRISFIRDMQSRGLIASISV--GVKEDEY-EFVQQLAAEHLTPEYITIDIAH---G------------------------ 131 (336)
T ss_dssp GHHHHHHHHHHTTCCCEEEE--CCSHHHH-HHHHHHHHTTCCCSEEEEECSS---C------------------------
T ss_pred HHHHHHHHHHhcCCeEEEeC--CCCHHHH-HHHHHHHhcCCCCCEEEEECCC---C------------------------
Confidence 111112211 112345553 3333332 3456666677 6666554310 0
Q ss_pred ccCccccccchhhHHHhhhccCccccH---HHHHhhcCCCEEEEe-cCCHHHHHHHHHcCCcEEEEcCCCCCCCC-----
Q 017718 188 DLGKMDEANDSGLAAYVAGQIDRSLSW---KWLQTITKLPILVKG-VLTAEDARIAVQAGAAGIIVSNHGARQLD----- 258 (367)
Q Consensus 188 ~~~~~~~~~~~~~~~~~~~~~d~~~~~---~~l~~~~~~Pv~vK~-v~~~~~a~~~~~~G~d~i~vs~~gg~~~~----- 258 (367)
++...| +++++.++.|+++|+ +.+.++|+.+.++|||+|+++||||++.+
T Consensus 132 ---------------------~~~~~~~~i~~lr~~~~~~~vi~G~v~s~e~A~~a~~aGad~Ivvs~hgG~~~~~~~~~ 190 (336)
T 1ypf_A 132 ---------------------HSNAVINMIQHIKKHLPESFVIAGNVGTPEAVRELENAGADATKVGIGPGKVCITKIKT 190 (336)
T ss_dssp ---------------------CSHHHHHHHHHHHHHCTTSEEEEEEECSHHHHHHHHHHTCSEEEECSSCSTTCHHHHHH
T ss_pred ---------------------CcHHHHHHHHHHHHhCCCCEEEECCcCCHHHHHHHHHcCCCEEEEecCCCceeeccccc
Confidence 112233 388888877777788 89999999999999999999999998754
Q ss_pred -Cccc--hHHHHHHHHHHhcCCCcEEEecCCCCHHHHHHHHHcCCCEEEechHHH--------------------HHhhc
Q 017718 259 -YVPA--TIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFIGRPVV--------------------YSLAA 315 (367)
Q Consensus 259 -~~~~--~~~~l~~i~~~~~~~~~via~GGI~~~~dv~kal~lGAd~V~ig~~~l--------------------~~l~~ 315 (367)
++.+ +++.|+++++.+ ++|||++|||+++.|++|+|++|||+|++||+|+ |++++
T Consensus 191 ~~g~~g~~~~~l~~v~~~~--~ipVIa~GGI~~g~Dv~kalalGAdaV~iGr~~l~t~Es~~~~~~~~g~~~k~~~g~~~ 268 (336)
T 1ypf_A 191 GFGTGGWQLAALRWCAKAA--SKPIIADGGIRTNGDVAKSIRFGATMVMIGSLFAGHEESPGETIEKDGKLYKEYFGSAS 268 (336)
T ss_dssp SCSSTTCHHHHHHHHHHTC--SSCEEEESCCCSTHHHHHHHHTTCSEEEESGGGTTCTTSSSCCC---------------
T ss_pred CcCCchhHHHHHHHHHHHc--CCcEEEeCCCCCHHHHHHHHHcCCCEEEeChhhhccccCCCceeeeCCeEeeeeecccc
Confidence 3344 789999998877 8999999999999999999999999999999999 88887
Q ss_pred cChHHHH-----------------HHHHHHHHHHHHHHHHhCCCChhhhcccceeec
Q 017718 316 EGEKGVR-----------------RVLEMLREEFELAMALSGCRSLKEITRDHIVTE 355 (367)
Q Consensus 316 ~G~~~v~-----------------~~i~~l~~el~~~m~~~G~~si~~l~~~~l~~~ 355 (367)
.|++++. ++++.+++||+..|.++|+++++||++..++..
T Consensus 269 ~~~~g~~~~~~g~~~~~~~~g~~~~~~~~l~~el~~~m~~~G~~~i~el~~~~~~~~ 325 (336)
T 1ypf_A 269 EFQKGEKKNVEGKKMFVEHKGSLEDTLIEMEQDLQSSISYAGGTKLDSIRTVDYVVV 325 (336)
T ss_dssp --------CTTSCCSSSSCCCCHHHHHHHHHHHHHHHHHHTTSSBGGGGGGCCEEEC
T ss_pred hhhccCccccccceeeecccccHHHHHHHHHHHHHHHHHHhCcccHHHhCcCCEEEE
Confidence 7777655 899999999999999999999999998877654
|
| >3r2g_A Inosine 5'-monophosphate dehydrogenase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 1.94A {Legionella pneumophila subsp} | Back alignment and structure |
|---|
Probab=100.00 E-value=7.8e-34 Score=276.82 Aligned_cols=253 Identities=19% Similarity=0.246 Sum_probs=203.0
Q ss_pred hccccceeeccccCCCC--CCccc--eeEcCeeeccceEeCcccchhccCChhhHHHHHHHHHcCCceeecCCCCCCHHH
Q 017718 41 NAFSRILFRPRILIDVS--KIDMN--TTVLGFKISMPIMIAPTAMQKMAHPEGEYATARAASAAGTIMTLSSWSTSSVEE 116 (367)
Q Consensus 41 ~~~~~i~l~pr~l~~~~--~vd~s--t~i~g~~l~~Pi~iAPm~~~~l~~~~~e~~~a~aa~~~G~~~~vs~~~~~~~e~ 116 (367)
.+||+|.|+|+.+.+++ ++|++ |+|+|++++.||++||| ++.+|.++|++++++|.+.+++++ .++|+
T Consensus 8 ~~fddv~l~P~~~~~~~r~~vd~~~~t~l~g~~l~~Pii~ApM------~~vte~~lA~A~a~~Gg~gvi~~~--~s~ee 79 (361)
T 3r2g_A 8 ITFDDVLLVPSYNHHESRRVVETTSTDRLGKLTLNLPVISANM------DTITESNMANFMHSKGAMGALHRF--MTIEE 79 (361)
T ss_dssp CCGGGEEECCCCCCSCTTCCCCCCEECTTSSCEESSCEEECCS------TTTCSHHHHHHHHHTTCEEBCCSC--SCHHH
T ss_pred cccceEEEECCCCCCCccccccceeeEEECCEEcCCCEEECCC------CCchHHHHHHHHHHcCCCEEEeCC--CCHHH
Confidence 37999999999999877 76655 59999999999999999 345689999999999999999864 78888
Q ss_pred HHhhCCCceEEEEeecCCHHHHHHHHHHHHHcCCcEEEEecCCCCCCchhHHhhhhcCCCCccccccccccccCcccccc
Q 017718 117 VASTGPGIRFFQLYVYKDRNVVAQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLTLKNFQGLDLGKMDEAN 196 (367)
Q Consensus 117 i~~~~~~~~~~QLy~~~d~~~~~~~l~ra~~~G~~ai~itvd~p~~g~r~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~ 196 (367)
+.+..+...|+|.|...+++...+.++++.++|++.|.+ |++.. . +
T Consensus 80 ~~~~i~~~~~~~~~~~g~~~~~~e~~~~a~~aGvdvI~i--d~a~G-~-----------~-------------------- 125 (361)
T 3r2g_A 80 NIQEFKKCKGPVFVSVGCTENELQRAEALRDAGADFFCV--DVAHA-H-----------A-------------------- 125 (361)
T ss_dssp HHHHHHTCCSCCBEEECSSHHHHHHHHHHHHTTCCEEEE--ECSCC-S-----------S--------------------
T ss_pred HHHHHhhcceEEEEEcCCCHHHHHHHHHHHHcCCCEEEE--eCCCC-C-----------c--------------------
Confidence 876544456788887778888889999999999996655 54321 0 0
Q ss_pred chhhHHHhhhccCccc-cHHHHHhhc-CCCEEEEecCCHHHHHHHHHcCCcEEEEcCCCCCCCC------CccchHHHHH
Q 017718 197 DSGLAAYVAGQIDRSL-SWKWLQTIT-KLPILVKGVLTAEDARIAVQAGAAGIIVSNHGARQLD------YVPATIMALE 268 (367)
Q Consensus 197 ~~~~~~~~~~~~d~~~-~~~~l~~~~-~~Pv~vK~v~~~~~a~~~~~~G~d~i~vs~~gg~~~~------~~~~~~~~l~ 268 (367)
..+ . ..+++|+.+ ++||++|.+.++++|+.+.++|+|+|.|++|+|++.+ .+.+.++.|+
T Consensus 126 -----~~~-------~e~I~~ir~~~~~~~Vi~G~V~T~e~A~~a~~aGaD~I~Vg~g~G~~~~tr~~~g~g~p~l~aI~ 193 (361)
T 3r2g_A 126 -----KYV-------GKTLKSLRQLLGSRCIMAGNVATYAGADYLASCGADIIKAGIGGGSVCSTRIKTGFGVPMLTCIQ 193 (361)
T ss_dssp -----HHH-------HHHHHHHHHHHTTCEEEEEEECSHHHHHHHHHTTCSEEEECCSSSSCHHHHHHHCCCCCHHHHHH
T ss_pred -----HhH-------HHHHHHHHHhcCCCeEEEcCcCCHHHHHHHHHcCCCEEEEcCCCCcCccccccCCccHHHHHHHH
Confidence 000 1 123888887 7999999999999999999999999999999886532 3556778888
Q ss_pred HHHHHhcCCCcEEEecCCCCHHHHHHHHHcCCCEEEechHHHHHhhc---------------------------------
Q 017718 269 EVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFIGRPVVYSLAA--------------------------------- 315 (367)
Q Consensus 269 ~i~~~~~~~~~via~GGI~~~~dv~kal~lGAd~V~ig~~~l~~l~~--------------------------------- 315 (367)
++++.. . |||++|||+++.|+.|+|++|||+||+||+|+-...+
T Consensus 194 ~~~~~~--~-PVIAdGGI~~~~di~kALa~GAd~V~iGr~f~~t~Espg~~~~~~~g~~~k~y~Gm~s~~~~~~~~~~~~ 270 (361)
T 3r2g_A 194 DCSRAD--R-SIVADGGIKTSGDIVKALAFGADFVMIGGMLAGSAPTPGEVFQKDDGSKVKRYRGMASREAQEAFLGQMH 270 (361)
T ss_dssp HHTTSS--S-EEEEESCCCSHHHHHHHHHTTCSEEEESGGGTTBTTSSSCEEECTTSCEEEEESCCHHHHHHHHHTTCCS
T ss_pred HHHHhC--C-CEEEECCCCCHHHHHHHHHcCCCEEEEChHHhCCccCCceeEEecCCeEEEEEecCCCcchhhhhhcccc
Confidence 776544 2 9999999999999999999999999999998532110
Q ss_pred -----cCh-------HHHHHHHHHHHHHHHHHHHHhCCCChhhhccc
Q 017718 316 -----EGE-------KGVRRVLEMLREEFELAMALSGCRSLKEITRD 350 (367)
Q Consensus 316 -----~G~-------~~v~~~i~~l~~el~~~m~~~G~~si~~l~~~ 350 (367)
+|. ..+.+++..|...|+..|.++|+.+|.||+..
T Consensus 271 ~~~~~eG~~~~v~~~g~~~~~~~~~~~glr~~m~y~G~~~i~~l~~~ 317 (361)
T 3r2g_A 271 EWKTAEGVATEVPFKENPDGIIADIIGGLRSGLTYAGADSISELQRK 317 (361)
T ss_dssp TTCCSCCCCEEEECBCCHHHHHHHHHHHHHHHHHHTTCSSHHHHHHT
T ss_pred ccccCCcceeecCCCCCHHHHHHHHHHHHHHHhhhcCcccHHHHHhC
Confidence 111 13789999999999999999999999999543
|
| >2c6q_A GMP reductase 2; TIM barrel, metal-binding, NADP, oxidoreductase, potassium; HET: IMP NDP; 1.70A {Homo sapiens} PDB: 2bzn_A* 2a7r_A* 2ble_A* 2bwg_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=7.6e-34 Score=277.50 Aligned_cols=259 Identities=20% Similarity=0.227 Sum_probs=197.6
Q ss_pred HHHhHhccccceeeccccC-CC-CCCccceeEc-----CeeeccceEeCcccchhccCChhhHHHHHHHHHcCCceeecC
Q 017718 36 LQENRNAFSRILFRPRILI-DV-SKIDMNTTVL-----GFKISMPIMIAPTAMQKMAHPEGEYATARAASAAGTIMTLSS 108 (367)
Q Consensus 36 ~~~n~~~~~~i~l~pr~l~-~~-~~vd~st~i~-----g~~l~~Pi~iAPm~~~~l~~~~~e~~~a~aa~~~G~~~~vs~ 108 (367)
+++|..+||+|.|+|+.+. ++ +++||+|+|+ +++++.||++|||++. ++.++++++.++|...+++.
T Consensus 15 ~~~~~~~fddv~l~p~~~~~~~~~~vdl~t~l~~~~~~~~~l~~PIi~ApM~~~------~~~~lA~Ava~~Gglg~i~~ 88 (351)
T 2c6q_A 15 VPRGSLDFKDVLLRPKRSTLKSRSEVDLTRSFSFRNSKQTYSGVPIIAANMDTV------GTFEMAKVLCKFSLFTAVHK 88 (351)
T ss_dssp ----CCCGGGEEECCCCBCCCCGGGCBCCEEEECTTTCCEEEECCEEECSSTTT------SCHHHHHHHHHTTCEEECCT
T ss_pred cccCCCCcceEEEECCCCCCCccccceeEEEeccccCcCccccCCEEECCCCCC------CcHHHHHHHHHCCCEEEEcC
Confidence 5788999999999999986 68 7999999999 9999999999999864 37899999999998877763
Q ss_pred CCCCCHHHHHhh---CCC---ceEEEEeecCCHHHHHHHHHHHHHc--CCcEEEEecCCCCCCchhHHhhhhcCCCCccc
Q 017718 109 WSTSSVEEVAST---GPG---IRFFQLYVYKDRNVVAQLVRRAERA--GFKAIALTVDTPRLGRREADIKNRFTLPPFLT 180 (367)
Q Consensus 109 ~~~~~~e~i~~~---~~~---~~~~QLy~~~d~~~~~~~l~ra~~~--G~~ai~itvd~p~~g~r~~~~~~~~~~p~~~~ 180 (367)
+.++|++.+. .|. +....+ +.+.+.. +.++.+.+. |++++.+++.. |
T Consensus 89 --~~s~e~~~~~i~~~p~~l~~v~~~~--g~~~~~~-~~~~~l~~~~~g~~~i~i~~~~---g----------------- 143 (351)
T 2c6q_A 89 --HYSLVQWQEFAGQNPDCLEHLAASS--GTGSSDF-EQLEQILEAIPQVKYICLDVAN---G----------------- 143 (351)
T ss_dssp --TCCHHHHHHHHHHCGGGCTTEEEEE--CSSHHHH-HHHHHHHHHCTTCCEEEEECSC---T-----------------
T ss_pred --CCCHHHHHHHHhhCchhhheeEeec--CCChHHH-HHHHHHHhccCCCCEEEEEecC---C-----------------
Confidence 4567765443 221 122222 2333332 334444444 78877664421 0
Q ss_pred cccccccccCccccccchhhHHHhhhccCccccH---HHHHhhc-CCCEEEEecCCHHHHHHHHHcCCcEEEEcCCCCC-
Q 017718 181 LKNFQGLDLGKMDEANDSGLAAYVAGQIDRSLSW---KWLQTIT-KLPILVKGVLTAEDARIAVQAGAAGIIVSNHGAR- 255 (367)
Q Consensus 181 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~---~~l~~~~-~~Pv~vK~v~~~~~a~~~~~~G~d~i~vs~~gg~- 255 (367)
++...| +++|+.+ ++||++|.+.+.++|+.+.++|+|+|+|++|||+
T Consensus 144 ----------------------------~~~~~~~~i~~lr~~~~~~~vi~g~v~t~e~A~~a~~aGaD~I~v~~g~G~~ 195 (351)
T 2c6q_A 144 ----------------------------YSEHFVEFVKDVRKRFPQHTIMAGNVVTGEMVEELILSGADIIKVGIGPGSV 195 (351)
T ss_dssp ----------------------------TBHHHHHHHHHHHHHCTTSEEEEEEECSHHHHHHHHHTTCSEEEECSSCSTT
T ss_pred ----------------------------CcHHHHHHHHHHHHhcCCCeEEEEeCCCHHHHHHHHHhCCCEEEECCCCCcC
Confidence 011122 3888888 8999999999999999999999999999988763
Q ss_pred ----CC-CCccchHHHHHHHHHHhcC-CCcEEEecCCCCHHHHHHHHHcCCCEEEechHHH-------------------
Q 017718 256 ----QL-DYVPATIMALEEVVKATQG-RIPVFLDGGVRRGTDVFKALALGASGIFIGRPVV------------------- 310 (367)
Q Consensus 256 ----~~-~~~~~~~~~l~~i~~~~~~-~~~via~GGI~~~~dv~kal~lGAd~V~ig~~~l------------------- 310 (367)
++ .++.+++..|+++.+.++. ++|||++|||+++.|++|+|++|||+|++||+|+
T Consensus 196 ~~~r~~~g~~~p~~~~l~~v~~~~~~~~ipvIa~GGI~~g~di~kAlalGA~~V~vG~~fl~~~Es~~~~~~~~g~~~k~ 275 (351)
T 2c6q_A 196 CTTRKKTGVGYPQLSAVMECADAAHGLKGHIISDGGCSCPGDVAKAFGAGADFVMLGGMLAGHSESGGELIERDGKKYKL 275 (351)
T ss_dssp BCHHHHHCBCCCHHHHHHHHHHHHHHTTCEEEEESCCCSHHHHHHHHHTTCSEEEESTTTTTBTTSCSCEEEETTEEEEE
T ss_pred cCccccCCCCccHHHHHHHHHHHHhhcCCcEEEeCCCCCHHHHHHHHHcCCCceeccHHHhcCccCcchhhhhcCeeeee
Confidence 22 2367788888888776532 7999999999999999999999999999999997
Q ss_pred -HHhhccC--------------hHH----------HHHHHHHHHHHHHHHHHHhCCCChhhhccccee
Q 017718 311 -YSLAAEG--------------EKG----------VRRVLEMLREEFELAMALSGCRSLKEITRDHIV 353 (367)
Q Consensus 311 -~~l~~~G--------------~~~----------v~~~i~~l~~el~~~m~~~G~~si~~l~~~~l~ 353 (367)
|++++.| ++| +.++++.|+.||+..|.++|+++++||++....
T Consensus 276 ~~g~~~~~a~~~~~g~~~~~~~~~g~~~~~~~~g~v~~~~~~l~~~l~~~m~~~G~~~i~~l~~~~~~ 343 (351)
T 2c6q_A 276 FYGMSSEMAMKKYAGGVAEYRASEGKTVEVPFKGDVEHTIRDILGGIRSTCTYVGAAKLKELSRRTTF 343 (351)
T ss_dssp EECTTBHHHHHHHSSSCCTTCCCCBCEEEEECCBCHHHHHHHHHHHHHHHHHHHTCSBGGGHHHHCCE
T ss_pred ccccccHhhhhcccccccccccccceEEEeeccCcHHHHHHHHHHHHHHHHHHcCCCCHHHHhhCCcE
Confidence 5655433 366 999999999999999999999999999866443
|
| >1eep_A Inosine 5'-monophosphate dehydrogenase; alpha-beta barrel, TIM barrel, IMPDH, IMP dehydrogenase, LOO purine biosynthesis, oxidoreductase; 2.40A {Borrelia burgdorferi} SCOP: c.1.5.1 | Back alignment and structure |
|---|
Probab=99.97 E-value=3.5e-30 Score=256.41 Aligned_cols=297 Identities=18% Similarity=0.237 Sum_probs=180.0
Q ss_pred hccccceeeccccC-CCCCCccceeEc-CeeeccceEeCcccchhccCChhhHHHHHHHHHcCCceeecCCCCCCHHHHH
Q 017718 41 NAFSRILFRPRILI-DVSKIDMNTTVL-GFKISMPIMIAPTAMQKMAHPEGEYATARAASAAGTIMTLSSWSTSSVEEVA 118 (367)
Q Consensus 41 ~~~~~i~l~pr~l~-~~~~vd~st~i~-g~~l~~Pi~iAPm~~~~l~~~~~e~~~a~aa~~~G~~~~vs~~~~~~~e~i~ 118 (367)
.+||+|.|+|+.+. +++++||+|+|+ |++++.||++|||++++ +..++.++.+.|...+++ ++.++|++.
T Consensus 10 ~~fd~v~l~p~~~~~~~~~vdlst~l~~g~~l~~Pii~Apm~~~~------~~ela~a~a~aGglg~i~--~~~s~e~~~ 81 (404)
T 1eep_A 10 LTFDDVSLIPRKSSVLPSEVSLKTQLTKNISLNIPFLSSAMDTVT------ESQMAIAIAKEGGIGIIH--KNMSIEAQR 81 (404)
T ss_dssp CCGGGEEECCCCCCSCGGGCCCCEESSSSCEESSSEEECCCTTTC------SHHHHHHHHHHTSEEEEC--SSSCHHHHH
T ss_pred CCcccEEEccCCCCcCccccccceeccCCcccCCCEEeCCCCCCC------CHHHHHHHHHCCCEEEEC--CCCCHHHHH
Confidence 57999999999997 789999999999 99999999999998743 556777788888877776 456777765
Q ss_pred hhCCCceEEE----EeecCCHHHHH-HHHHHHHH----cCCcEEEEecCCCCCCchhHHhhhhcCCCCcccccccccccc
Q 017718 119 STGPGIRFFQ----LYVYKDRNVVA-QLVRRAER----AGFKAIALTVDTPRLGRREADIKNRFTLPPFLTLKNFQGLDL 189 (367)
Q Consensus 119 ~~~~~~~~~Q----Ly~~~d~~~~~-~~l~ra~~----~G~~ai~itvd~p~~g~r~~~~~~~~~~p~~~~~~~~~~~~~ 189 (367)
+..+...++| +|...+..+.+ .++..... .+.+.+..+.+.|.. .|+.+-+..+ ..|+....
T Consensus 82 ~~~~~~~~~~~~~g~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~p~~-~~~~~~~~~~-------~~~i~~~~- 152 (404)
T 1eep_A 82 KEIEKVKTYKFQKTINTNGDTNEQKPEIFTAKQHLEKSDAYKNAEHKEDFPNA-CKDLNNKLRV-------GAAVSIDI- 152 (404)
T ss_dssp HHHHHHHTCC--------------------------------------CCTTC-CBCTTSCBCC-------EEEECSCT-
T ss_pred HHHHHHHhhccCCCceeccccccccccccccCCCCCHHHHHHHHHHhhhcchh-hhhcccCceE-------EEEeCCCh-
Confidence 4322111221 33222211100 00000000 011122222233321 1110000000 00000000
Q ss_pred Cccc--cccchhhHHHh---hhccCccccHH---HHHhhc-CCCEEEEecCCHHHHHHHHHcCCcEEEEcCCCCCC----
Q 017718 190 GKMD--EANDSGLAAYV---AGQIDRSLSWK---WLQTIT-KLPILVKGVLTAEDARIAVQAGAAGIIVSNHGARQ---- 256 (367)
Q Consensus 190 ~~~~--~~~~~~~~~~~---~~~~d~~~~~~---~l~~~~-~~Pv~vK~v~~~~~a~~~~~~G~d~i~vs~~gg~~---- 256 (367)
.... ..........+ ....++...|+ ++|+.+ ++||+++.+.+.++|+.+.++|+|+|+++.++|+.
T Consensus 153 ~~~~~a~~~~~~G~d~i~i~~~~g~~~~~~e~i~~ir~~~~~~pviv~~v~~~~~a~~a~~~Gad~I~vg~~~G~~~~~~ 232 (404)
T 1eep_A 153 DTIERVEELVKAHVDILVIDSAHGHSTRIIELIKKIKTKYPNLDLIAGNIVTKEAALDLISVGADCLKVGIGPGSICTTR 232 (404)
T ss_dssp THHHHHHHHHHTTCSEEEECCSCCSSHHHHHHHHHHHHHCTTCEEEEEEECSHHHHHHHHTTTCSEEEECSSCSTTSHHH
T ss_pred hHHHHHHHHHHCCCCEEEEeCCCCChHHHHHHHHHHHHHCCCCeEEEcCCCcHHHHHHHHhcCCCEEEECCCCCcCcCcc
Confidence 0000 00000000000 01123334454 788888 79999999999999999999999999996545431
Q ss_pred --CCCccchHHHHHHHHHHhc-CCCcEEEecCCCCHHHHHHHHHcCCCEEEechHHH--------------------HHh
Q 017718 257 --LDYVPATIMALEEVVKATQ-GRIPVFLDGGVRRGTDVFKALALGASGIFIGRPVV--------------------YSL 313 (367)
Q Consensus 257 --~~~~~~~~~~l~~i~~~~~-~~~~via~GGI~~~~dv~kal~lGAd~V~ig~~~l--------------------~~l 313 (367)
.+.+.+.++.++++.+.+. .++|||++|||++++|+.|++++|||+|++||+|+ +++
T Consensus 233 ~~~~~g~p~~~~l~~v~~~~~~~~ipVia~GGI~~~~d~~~ala~GAd~V~iG~~~l~~~e~~~~~~~~~g~~~k~~~g~ 312 (404)
T 1eep_A 233 IVAGVGVPQITAICDVYEACNNTNICIIADGGIRFSGDVVKAIAAGADSVMIGNLFAGTKESPSEEIIYNGKKFKSYVGM 312 (404)
T ss_dssp HHHCCCCCHHHHHHHHHHHHTTSSCEEEEESCCCSHHHHHHHHHHTCSEEEECHHHHTBTTSSSCEEEETTEEEEC----
T ss_pred ccCCCCcchHHHHHHHHHHHhhcCceEEEECCCCCHHHHHHHHHcCCCHHhhCHHHhcCCCCCcchhhhCCeEEeecCCC
Confidence 1234557788888887654 37999999999999999999999999999999994 333
Q ss_pred hc-------------------------cChHH-------HHHHHHHHHHHHHHHHHHhCCCChhhhcccceee
Q 017718 314 AA-------------------------EGEKG-------VRRVLEMLREEFELAMALSGCRSLKEITRDHIVT 354 (367)
Q Consensus 314 ~~-------------------------~G~~~-------v~~~i~~l~~el~~~m~~~G~~si~~l~~~~l~~ 354 (367)
.. +|.++ |.++++.|.+||+..|.++|+++++||++..+..
T Consensus 313 ~~~g~~~~g~~~~~~~g~~~~~~~l~~~g~~~~v~~~~~v~~~~~~l~~el~~~m~~~G~~~i~~l~~~~~~~ 385 (404)
T 1eep_A 313 GSISAMKRGSKSRYFQLENNEPKKLVPEGIEGMVPYSGKLKDILTQLKGGLMSGMGYLGAATISDLKINSKFV 385 (404)
T ss_dssp --------------------------------CEECCBCHHHHHHHHHHHHHHHHHHHTCSSHHHHHHSCCEE
T ss_pred CCHHHHhhccccchhcccccccccccCceeEEeccCCccHHHHHHHHHHHHHHHHHHhCCCCHHHHhhcCcEE
Confidence 21 23333 8899999999999999999999999999876553
|
| >2e6f_A Dihydroorotate dehydrogenase; chagas disease, pyrimidine biosynthesis, fumarate reductase, energy metabolism, redox homeostasis, flavoprotein; HET: FMN OXC; 1.26A {Trypanosoma cruzi} PDB: 2e6a_A* 2e6d_A* 2e68_A* 2djl_A* 2djx_A* 3c3n_A* 2b4g_A* 3c61_A* 3mhu_A* 3mjy_A* | Back alignment and structure |
|---|
Probab=99.93 E-value=1.9e-24 Score=207.90 Aligned_cols=239 Identities=19% Similarity=0.197 Sum_probs=179.2
Q ss_pred CccceeEcCeeeccceEeCcccchhccCChhhHHHHHHHHHcCCceeecCC-C--------------------------C
Q 017718 59 IDMNTTVLGFKISMPIMIAPTAMQKMAHPEGEYATARAASAAGTIMTLSSW-S--------------------------T 111 (367)
Q Consensus 59 vd~st~i~g~~l~~Pi~iAPm~~~~l~~~~~e~~~a~aa~~~G~~~~vs~~-~--------------------------~ 111 (367)
+|++++|+|+++++||++||+... .+..+.+.+.+.|+.+++..+ + +
T Consensus 2 ~dl~~~i~g~~l~nPi~~Aag~~~------~~~~~~~~~~~~G~g~v~~~~v~~~~~~gn~~pr~~~~~~~~in~~g~~~ 75 (314)
T 2e6f_A 2 MCLKLNLLDHVFANPFMNAAGVLC------STEEDLRCMTASSSGALVSKSCTSAPRDGNPEPRYMAFPLGSINSMGLPN 75 (314)
T ss_dssp CCCCEEETTEEESSSEEECTTSSC------SSHHHHHHHHHSSCSCEECCCBCSSCBCCSCSCCEEEETTEEEECCCCCB
T ss_pred CCcceEECCEecCCCcEECCCCCC------CCHHHHHHHHHCCCCEEEeCccCCcccCCCCCCcEEecccceeecCCCCC
Confidence 589999999999999999985421 245667789999999865422 1 1
Q ss_pred CCHH----HHHhh-C--CCceEEEEeecCCHHHHHHHHHHHHHcCCc---EEEEecCCCCCCchhHHhhhhcCCCCcccc
Q 017718 112 SSVE----EVAST-G--PGIRFFQLYVYKDRNVVAQLVRRAERAGFK---AIALTVDTPRLGRREADIKNRFTLPPFLTL 181 (367)
Q Consensus 112 ~~~e----~i~~~-~--~~~~~~QLy~~~d~~~~~~~l~ra~~~G~~---ai~itvd~p~~g~r~~~~~~~~~~p~~~~~ 181 (367)
...+ ++... . ..|...|+. ..+.+...+.+++++++|++ ++.+|+.||.. .+.+++
T Consensus 76 ~g~~~~~~~~~~~~~~~~~p~~~~i~-g~~~~~~~~~a~~~~~~g~d~~~~iein~~~P~~-~g~~~~------------ 141 (314)
T 2e6f_A 76 LGFDFYLKYASDLHDYSKKPLFLSIS-GLSVEENVAMVRRLAPVAQEKGVLLELNLSCPNV-PGKPQV------------ 141 (314)
T ss_dssp SCHHHHHHHHHHTCCTTTCCEEEEEC-CSSHHHHHHHHHHHHHHHHHHCCEEEEECCCCCS-TTCCCG------------
T ss_pred cCHHHHHHHHHHHhhcCCCcEEEEeC-CCCHHHHHHHHHHHHHhCCCcCceEEEEcCCCCC-CCchhh------------
Confidence 1122 23322 2 257888987 56888889999999999999 99999999974 110000
Q ss_pred ccccccccCccccccchhhHHHhhhccCcccc---HHHHHhhcCCCEEEEecC--CHHH----HHHHHHcC-CcEEEEcC
Q 017718 182 KNFQGLDLGKMDEANDSGLAAYVAGQIDRSLS---WKWLQTITKLPILVKGVL--TAED----ARIAVQAG-AAGIIVSN 251 (367)
Q Consensus 182 ~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~---~~~l~~~~~~Pv~vK~v~--~~~~----a~~~~~~G-~d~i~vs~ 251 (367)
.. ++... .+++|+.+++||++|... +.++ |+.+.++| +|+|+++|
T Consensus 142 -----------------------g~--~~~~~~~ii~~vr~~~~~Pv~vK~~~~~~~~~~~~~a~~~~~aG~~d~i~v~~ 196 (314)
T 2e6f_A 142 -----------------------AY--DFEAMRTYLQQVSLAYGLPFGVKMPPYFDIAHFDTAAAVLNEFPLVKFVTCVN 196 (314)
T ss_dssp -----------------------GG--SHHHHHHHHHHHHHHHCSCEEEEECCCCCHHHHHHHHHHHHTCTTEEEEEECC
T ss_pred -----------------------cC--CHHHHHHHHHHHHHhcCCCEEEEECCCCCHHHHHHHHHHHHhcCCceEEEEeC
Confidence 00 11111 237888889999999984 4445 88889999 99999988
Q ss_pred CCCC--CCC-----------------Cc----cchHHHHHHHHHHhcCCCcEEEecCCCCHHHHHHHHHcCCCEEEechH
Q 017718 252 HGAR--QLD-----------------YV----PATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFIGRP 308 (367)
Q Consensus 252 ~gg~--~~~-----------------~~----~~~~~~l~~i~~~~~~~~~via~GGI~~~~dv~kal~lGAd~V~ig~~ 308 (367)
+.++ ..+ .+ +..++.++++++.+ .++|||++|||++++|+.+++++|||+|++||+
T Consensus 197 ~~~~~~~i~~~~~~~~~~~~~~~gG~sg~~~~p~~~~~i~~v~~~~-~~ipvi~~GGI~~~~da~~~l~~GAd~V~ig~~ 275 (314)
T 2e6f_A 197 SVGNGLVIDAESESVVIKPKQGFGGLGGKYILPTALANVNAFYRRC-PDKLVFGCGGVYSGEDAFLHILAGASMVQVGTA 275 (314)
T ss_dssp CEEEEECEETTTTEESCCGGGGEEEEESGGGHHHHHHHHHHHHHHC-TTSEEEEESSCCSHHHHHHHHHHTCSSEEECHH
T ss_pred CCCccccccCCCCCcccccCcCCCccCcccccHHHHHHHHHHHHhc-CCCCEEEECCCCCHHHHHHHHHcCCCEEEEchh
Confidence 6531 010 11 22467888888877 589999999999999999999999999999999
Q ss_pred HHHHhhccChHHHHHHHHHHHHHHHHHHHHhCCCChhhhcccc
Q 017718 309 VVYSLAAEGEKGVRRVLEMLREEFELAMALSGCRSLKEITRDH 351 (367)
Q Consensus 309 ~l~~l~~~G~~~v~~~i~~l~~el~~~m~~~G~~si~~l~~~~ 351 (367)
+++ +|+. +++.++++++.+|...|++|++|+++..
T Consensus 276 ~l~----~~p~----~~~~i~~~l~~~~~~~g~~~i~~~~g~~ 310 (314)
T 2e6f_A 276 LQE----EGPG----IFTRLEDELLEIMARKGYRTLEEFRGRV 310 (314)
T ss_dssp HHH----HCTT----HHHHHHHHHHHHHHHHTCCSSTTTTTCC
T ss_pred hHh----cCcH----HHHHHHHHHHHHHHHcCCCCHHHHhchH
Confidence 997 2553 7889999999999999999999998764
|
| >3khj_A Inosine-5-monophosphate dehydrogenase; enzyme-inhibitor complex, oxidoreductase; HET: IMP C64; 2.80A {Cryptosporidium parvum} | Back alignment and structure |
|---|
Probab=99.93 E-value=6.5e-24 Score=207.82 Aligned_cols=250 Identities=22% Similarity=0.305 Sum_probs=180.4
Q ss_pred hccccceeeccccCC--CCCCccceeEc-CeeeccceEeCcccchhccCChhhHHHHHHHHHcCCceeecCCCCCCHHHH
Q 017718 41 NAFSRILFRPRILID--VSKIDMNTTVL-GFKISMPIMIAPTAMQKMAHPEGEYATARAASAAGTIMTLSSWSTSSVEEV 117 (367)
Q Consensus 41 ~~~~~i~l~pr~l~~--~~~vd~st~i~-g~~l~~Pi~iAPm~~~~l~~~~~e~~~a~aa~~~G~~~~vs~~~~~~~e~i 117 (367)
..||++.|+|+ +++ .+++|++|+|. ++.+..||+.|||.+.+ +..++.+..+.|...++.. +.+.++.
T Consensus 13 ~~fddv~l~p~-~~~~~~~~vdl~t~l~~~~~l~~Pii~apM~~vt------~~~lA~avA~~GGlgii~~--~~s~e~~ 83 (361)
T 3khj_A 13 LTFEDILLVPN-YSEVLPREVSLETKLTKNVSLKIPLISSAMDTVT------EHLMAVGMARLGGIGIIHK--NMDMESQ 83 (361)
T ss_dssp CCGGGEEECCC-CBCCCGGGCCCCEESSSSCEESSSEEECSSTTTC------SHHHHHHHHHTTCEEEECS--SSCHHHH
T ss_pred CCcceEEEECC-CCCCCHHHccCceecccccccCCCEEeecCCCCC------cHHHHHHHHHcCCCeEEec--CCCHHHH
Confidence 37999999998 554 46899999997 79999999999998664 5688887665554444432 3444443
Q ss_pred H----h---hCCCceEEEEeecCCHHHHHHHHHHHHHcCCcEEEEecCCCCCCchhHHhhhhcCCCCccccccccccccC
Q 017718 118 A----S---TGPGIRFFQLYVYKDRNVVAQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLTLKNFQGLDLG 190 (367)
Q Consensus 118 ~----~---~~~~~~~~QLy~~~d~~~~~~~l~ra~~~G~~ai~itvd~p~~g~r~~~~~~~~~~p~~~~~~~~~~~~~~ 190 (367)
. + ....+....+... + .+.++.+.++|++.|.++. +. |. |
T Consensus 84 ~~~I~~vk~~~~~pvga~ig~~-~----~e~a~~l~eaGad~I~ld~--a~-G~-----------~-------------- 130 (361)
T 3khj_A 84 VNEVLKVKNSGGLRVGAAIGVN-E----IERAKLLVEAGVDVIVLDS--AH-GH-----------S-------------- 130 (361)
T ss_dssp HHHHHHHHHTTCCCCEEEECTT-C----HHHHHHHHHTTCSEEEECC--SC-CS-----------B--------------
T ss_pred HHHHHHHHhccCceEEEEeCCC-H----HHHHHHHHHcCcCeEEEeC--CC-CC-----------c--------------
Confidence 2 1 1224556666532 2 5667788889999887643 21 00 0
Q ss_pred ccccccchhhHHHhhhccCccc-cHHHHHhhcCCCEEEEecCCHHHHHHHHHcCCcEEEEcCCCCCC------CCCccch
Q 017718 191 KMDEANDSGLAAYVAGQIDRSL-SWKWLQTITKLPILVKGVLTAEDARIAVQAGAAGIIVSNHGARQ------LDYVPAT 263 (367)
Q Consensus 191 ~~~~~~~~~~~~~~~~~~d~~~-~~~~l~~~~~~Pv~vK~v~~~~~a~~~~~~G~d~i~vs~~gg~~------~~~~~~~ 263 (367)
..-. .++++++.+++||+++.+.+.++++.+.++|+|+|.++.++|.. ...+.+.
T Consensus 131 ------------------~~~~~~i~~i~~~~~~~Vivg~v~t~e~A~~l~~aGaD~I~VG~~~Gs~~~tr~~~g~g~p~ 192 (361)
T 3khj_A 131 ------------------LNIIRTLKEIKSKMNIDVIVGNVVTEEATKELIENGADGIKVGIGPGSICTTRIVAGVGVPQ 192 (361)
T ss_dssp ------------------HHHHHHHHHHHHHCCCEEEEEEECSHHHHHHHHHTTCSEEEECSSCCTTCCHHHHTCBCCCH
T ss_pred ------------------HHHHHHHHHHHHhcCCcEEEccCCCHHHHHHHHHcCcCEEEEecCCCcCCCcccccCCCCCc
Confidence 0000 12367777799999999999999999999999999996554421 1245678
Q ss_pred HHHHHHHHHHhcC-CCcEEEecCCCCHHHHHHHHHcCCCEEEechHHH--------------------HHhhc-------
Q 017718 264 IMALEEVVKATQG-RIPVFLDGGVRRGTDVFKALALGASGIFIGRPVV--------------------YSLAA------- 315 (367)
Q Consensus 264 ~~~l~~i~~~~~~-~~~via~GGI~~~~dv~kal~lGAd~V~ig~~~l--------------------~~l~~------- 315 (367)
++.+.++.+.... ++|||++|||+++.|+.|++++|||+|++||+|+ |+++.
T Consensus 193 ~~~i~~v~~~~~~~~iPVIA~GGI~~~~di~kala~GAd~V~vGs~~~~t~Esp~~~~~~~g~~~k~y~gm~s~~a~~~~ 272 (361)
T 3khj_A 193 ITAIEKCSSVASKFGIPIIADGGIRYSGDIGKALAVGASSVMIGSILAGTEESPGEKELIGDTVYKYYRGMGSVGAMKSG 272 (361)
T ss_dssp HHHHHHHHHHHHHHTCCEEEESCCCSHHHHHHHHHHTCSEEEESTTTTTBTTSSCEEEEETTEEEEEC------------
T ss_pred HHHHHHHHHHHhhcCCeEEEECCCCCHHHHHHHHHcCCCEEEEChhhhcCCcCCcchhhcCCeEEEEeeccchHHHHhcc
Confidence 8888888654322 7999999999999999999999999999999874 23220
Q ss_pred -------cC-------hH----------HHHHHHHHHHHHHHHHHHHhCCCChhhhccc
Q 017718 316 -------EG-------EK----------GVRRVLEMLREEFELAMALSGCRSLKEITRD 350 (367)
Q Consensus 316 -------~G-------~~----------~v~~~i~~l~~el~~~m~~~G~~si~~l~~~ 350 (367)
++ ++ .+.+++..+...|+..|.++|+.+|.||+..
T Consensus 273 ~~~~y~~~~~~~~~~~~eg~~~~v~~~g~~~~~~~~~~~gl~~~~~~~g~~~~~~~~~~ 331 (361)
T 3khj_A 273 SGDRYFQEKRPENKMVPEGIEGRVKYKGEMEGVVYQLVGGLRSCMGYLGSASIEELWKK 331 (361)
T ss_dssp ---------------------CEEECCBCHHHHHHHHHHHHHHHHHHTTCSSHHHHHHH
T ss_pred chhhhhcccccccccCCCccEEeCCCCCCHHHHHHHHHHHHHHhhhhcCCccHHHHHhC
Confidence 01 12 2778999999999999999999999999754
|
| >1jub_A Dihydroorotate dehydrogenase A; homodimer, alpha-beta barrel, flavoprotein, mutant enzyme, oxidoreductase; HET: FMN; 1.40A {Lactococcus lactis} SCOP: c.1.4.1 PDB: 1ovd_A* 1jue_A* 1dor_A* 2bsl_A* 2bx7_A* 2dor_A* 1jqv_A* 1jrb_A* 1jrc_A* 1jqx_A* | Back alignment and structure |
|---|
Probab=99.92 E-value=7.8e-24 Score=203.31 Aligned_cols=238 Identities=20% Similarity=0.203 Sum_probs=177.8
Q ss_pred cceeEcCeeeccceEeCcccchhccCChhhHHHHHHHHHcCCceeecCCCC-CC--------------------------
Q 017718 61 MNTTVLGFKISMPIMIAPTAMQKMAHPEGEYATARAASAAGTIMTLSSWST-SS-------------------------- 113 (367)
Q Consensus 61 ~st~i~g~~l~~Pi~iAPm~~~~l~~~~~e~~~a~aa~~~G~~~~vs~~~~-~~-------------------------- 113 (367)
++++++|.++++||++||... +.+..+.+.+.+.|+.+++..+.+ .+
T Consensus 2 l~~~i~g~~l~npv~~Aag~~------~~~~~~~~~~~~~G~g~i~~~~v~~~~~~gn~~pr~~~~~~~~in~~g~~~~g 75 (311)
T 1jub_A 2 LNTTFANAKFANPFMNASGVH------CMTIEDLEELKASQAGAYITKSSTLEKREGNPLPRYVDLELGSINSMGLPNLG 75 (311)
T ss_dssp CCEEETTEEESSSEEECTTSS------CSSHHHHHHHHHSSCSCCBCCCBCSSCBCCSCSCCEEEETTEEEECCCCCBSC
T ss_pred CceEECCEEcCCCcEECCCCC------CCCHHHHHHHHHCCCCEEEeCccCCcccCCCCCCcEEecccceeecCCCCCcc
Confidence 679999999999999998321 125678899999999988743311 10
Q ss_pred HH----HHHh---hC--CCceEEEEeecCCHHHHHHHHHHHHHcCCc-EEEEecCCCCCCchhHHhhhhcCCCCcccccc
Q 017718 114 VE----EVAS---TG--PGIRFFQLYVYKDRNVVAQLVRRAERAGFK-AIALTVDTPRLGRREADIKNRFTLPPFLTLKN 183 (367)
Q Consensus 114 ~e----~i~~---~~--~~~~~~QLy~~~d~~~~~~~l~ra~~~G~~-ai~itvd~p~~g~r~~~~~~~~~~p~~~~~~~ 183 (367)
.+ ++.. .. ..|...|+. ..+.+...+.+++++++|++ ++.+|+.||.. .+.+++
T Consensus 76 ~~~~~~~~~~~~~~~~~~~p~~~~i~-g~~~~~~~~~a~~~~~~g~d~~iein~~~P~~-~g~~~~-------------- 139 (311)
T 1jub_A 76 FDYYLDYVLKNQKENAQEGPIFFSIA-GMSAAENIAMLKKIQESDFSGITELNLSCPNV-PGEPQL-------------- 139 (311)
T ss_dssp HHHHHHHHHHHHHHTCSSSCCEEEEC-CSSHHHHHHHHHHHHHSCCCSEEEEESCCCCS-SSCCCG--------------
T ss_pred HHHHHHHHHHHHHhcCCCCCEEEEcC-CCCHHHHHHHHHHHHhcCCCeEEEEeccCCCC-CCcccc--------------
Confidence 22 2221 22 357888987 57888889999999999999 99999999974 110000
Q ss_pred ccccccCccccccchhhHHHhhhccCccccH---HHHHhhcCCCEEEEecCC--HHH----HHHHHHcCCcEEEEcCCCC
Q 017718 184 FQGLDLGKMDEANDSGLAAYVAGQIDRSLSW---KWLQTITKLPILVKGVLT--AED----ARIAVQAGAAGIIVSNHGA 254 (367)
Q Consensus 184 ~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~---~~l~~~~~~Pv~vK~v~~--~~~----a~~~~~~G~d~i~vs~~gg 254 (367)
.. ++...+ +++|+.+++||++|...+ .++ |+.+.++|+|+|+++|+.+
T Consensus 140 ---------------------g~--~~e~~~~iv~~vr~~~~~Pv~vKi~~~~~~~~~~~~a~~~~~~G~d~i~v~~~~~ 196 (311)
T 1jub_A 140 ---------------------AY--DFEATEKLLKEVFTFFTKPLGVKLPPYFDLVHFDIMAEILNQFPLTYVNSVNSIG 196 (311)
T ss_dssp ---------------------GG--CHHHHHHHHHHHTTTCCSCEEEEECCCCSHHHHHHHHHHHTTSCCCEEEECCCEE
T ss_pred ---------------------cC--CHHHHHHHHHHHHHhcCCCEEEEECCCCCHHHHHHHHHHHHHcCCcEEEecCCCC
Confidence 00 111112 378888899999999853 323 7888999999999998742
Q ss_pred --CCCC--------------C---cc----chHHHHHHHHHHhcCCCcEEEecCCCCHHHHHHHHHcCCCEEEechHHHH
Q 017718 255 --RQLD--------------Y---VP----ATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFIGRPVVY 311 (367)
Q Consensus 255 --~~~~--------------~---~~----~~~~~l~~i~~~~~~~~~via~GGI~~~~dv~kal~lGAd~V~ig~~~l~ 311 (367)
.+.+ + ++ ..++.++++++.+++++|||++|||++++|+.+++++|||+|++||++++
T Consensus 197 ~g~~i~~~~~~~~~~~~~~~gG~sg~~~~~~~~~~i~~v~~~~~~~ipvi~~GGI~~~~da~~~l~~GAd~V~vg~~~l~ 276 (311)
T 1jub_A 197 NGLFIDPEAESVVIKPKDGFGGIGGAYIKPTALANVRAFYTRLKPEIQIIGTGGIETGQDAFEHLLCGATMLQIGTALHK 276 (311)
T ss_dssp EEECEETTTTEESCSGGGGEEEEESGGGHHHHHHHHHHHHTTSCTTSEEEEESSCCSHHHHHHHHHHTCSEEEECHHHHH
T ss_pred cCceeccCCCCcccccCCCCCccccccccHHHHHHHHHHHHhcCCCCCEEEECCCCCHHHHHHHHHcCCCEEEEchHHHh
Confidence 1111 0 22 24677888877765589999999999999999999999999999999997
Q ss_pred HhhccChHHHHHHHHHHHHHHHHHHHHhCCCChhhhcccc
Q 017718 312 SLAAEGEKGVRRVLEMLREEFELAMALSGCRSLKEITRDH 351 (367)
Q Consensus 312 ~l~~~G~~~v~~~i~~l~~el~~~m~~~G~~si~~l~~~~ 351 (367)
+|+. +++.++++++.+|...|++|++|+++..
T Consensus 277 ----~~p~----~~~~i~~~l~~~l~~~g~~si~e~~g~~ 308 (311)
T 1jub_A 277 ----EGPA----IFDRIIKELEEIMNQKGYQSIADFHGKL 308 (311)
T ss_dssp ----HCTH----HHHHHHHHHHHHHHHHTCCSGGGTTTCC
T ss_pred ----cCcH----HHHHHHHHHHHHHHHcCCCCHHHHhChh
Confidence 2553 7889999999999999999999998754
|
| >1gte_A Dihydropyrimidine dehydrogenase; electron transfer, flavin, iron-sulfur clusters, pyrimidine catabolism, 5-fluorouracil degradation, oxidoreductase; HET: FMN FAD; 1.65A {Sus scrofa} SCOP: a.1.2.2 c.1.4.1 c.3.1.1 c.4.1.1 d.58.1.5 PDB: 1gt8_A* 1gth_A* 1h7w_A* 1h7x_A* | Back alignment and structure |
|---|
Probab=99.92 E-value=7e-24 Score=232.96 Aligned_cols=254 Identities=21% Similarity=0.279 Sum_probs=190.8
Q ss_pred eeeccccCCCCCCccceeEcCeeeccceEeCcccchhccCChhhHHHHHHHHHcCCceee-cCCC-------CC------
Q 017718 47 LFRPRILIDVSKIDMNTTVLGFKISMPIMIAPTAMQKMAHPEGEYATARAASAAGTIMTL-SSWS-------TS------ 112 (367)
Q Consensus 47 ~l~pr~l~~~~~vd~st~i~g~~l~~Pi~iAPm~~~~l~~~~~e~~~a~aa~~~G~~~~v-s~~~-------~~------ 112 (367)
.-.|...++++++|++++++|+++++||++|||++.. +.++++.+.+.|..+++ ++.. +.
T Consensus 519 ~~~p~~~~ev~~v~ls~~~~G~~~~nPv~lAa~~~~~------~~~~~~~~~~~g~G~vv~~t~~~~~~~~gn~~pr~~~ 592 (1025)
T 1gte_A 519 PELPLFYTPVDLVDISVEMAGLKFINPFGLASAAPTT------SSSMIRRAFEAGWGFALTKTFSLDKDIVTNVSPRIVR 592 (1025)
T ss_dssp CCBCCCCCGGGGCCCCEEETTEEESSSEEECSSGGGS------SHHHHHHHHHHTCSEEECCCBCCGGGCCCCCSSCEEE
T ss_pred cCccccccccccccceeeeccccccCcccccCCCCCC------CHHHHHHHHHCCcCeEEeceecccccccCCCCccEEe
Confidence 3344444567899999999999999999999997653 56788889999988886 1111 00
Q ss_pred ------------------------C-------HHHHHhhCC-CceEEEEeecCCHHHHHHHHHHHHHcCCcEEEEecCCC
Q 017718 113 ------------------------S-------VEEVASTGP-GIRFFQLYVYKDRNVVAQLVRRAERAGFKAIALTVDTP 160 (367)
Q Consensus 113 ------------------------~-------~e~i~~~~~-~~~~~QLy~~~d~~~~~~~l~ra~~~G~~ai~itvd~p 160 (367)
. ++++.+..+ .+.+++++...+.+...+++++++++|+++|.||++||
T Consensus 593 ~~~~g~~~~~~~~~~~n~e~~~~~~~~~~~~~i~~~~~~~~~~~~i~~i~~g~~~~~~~~~a~~~~~~g~d~iein~~~P 672 (1025)
T 1gte_A 593 GTTSGPMYGPGQSSFLNIELISEKTAAYWCQSVTELKADFPDNIVIASIMCSYNKNDWMELSRKAEASGADALELNLSCP 672 (1025)
T ss_dssp CCTTCSCCSSCCSCEEECCCSCSSCHHHHHHHHHHHHHHCTTSEEEEEECCCSCHHHHHHHHHHHHHTTCSEEEEECCCB
T ss_pred ccccccccCCchhheeeeccccchhHHHHHHHHHHHHhcCCCCCeEEEecCCCCHHHHHHHHHHHHhcCCCEEEEECCCC
Confidence 1 123333344 67899998788999999999999999999999999999
Q ss_pred CCCchhHHhhhhcCCCCccccccccccccCccccccchhhHHHhhhccCccccHH---HHHhhcCCCEEEEecCC----H
Q 017718 161 RLGRREADIKNRFTLPPFLTLKNFQGLDLGKMDEANDSGLAAYVAGQIDRSLSWK---WLQTITKLPILVKGVLT----A 233 (367)
Q Consensus 161 ~~g~r~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~---~l~~~~~~Pv~vK~v~~----~ 233 (367)
.. .+.++. ++ .++. ++.+.|+ ++++.+++||++|+..+ .
T Consensus 673 ~~-~~~~~~---------------------------G~----~~~~--~~~~~~~iv~~v~~~~~~Pv~vK~~~~~~~~~ 718 (1025)
T 1gte_A 673 HG-MGERGM---------------------------GL----ACGQ--DPELVRNICRWVRQAVQIPFFAKLTPNVTDIV 718 (1025)
T ss_dssp CC-CC--------------------------------S----BGGG--CHHHHHHHHHHHHHHCSSCEEEEECSCSSCHH
T ss_pred CC-CCCCCc---------------------------cc----cccc--CHHHHHHHHHHHHHhhCCceEEEeCCChHHHH
Confidence 73 111000 00 0111 3333333 88888899999999864 3
Q ss_pred HHHHHHHHcCCcEEEEcCC--------------------CCCCCC--Cccch----HHHHHHHHHHhcCCCcEEEecCCC
Q 017718 234 EDARIAVQAGAAGIIVSNH--------------------GARQLD--YVPAT----IMALEEVVKATQGRIPVFLDGGVR 287 (367)
Q Consensus 234 ~~a~~~~~~G~d~i~vs~~--------------------gg~~~~--~~~~~----~~~l~~i~~~~~~~~~via~GGI~ 287 (367)
+.|+.+.++|+|+|+++|+ |++... .+++. ++.++++++.+ .++|||++|||+
T Consensus 719 ~~a~~~~~~G~d~i~v~Nt~~~~~~~~~~~~~~~~~~~~gr~~~gg~sg~~~~~~~~~~v~~v~~~~-~~ipvi~~GGI~ 797 (1025)
T 1gte_A 719 SIARAAKEGGADGVTATNTVSGLMGLKADGTPWPAVGAGKRTTYGGVSGTAIRPIALRAVTTIARAL-PGFPILATGGID 797 (1025)
T ss_dssp HHHHHHHHHTCSEEEECCCEEECCCBCTTSCBSSCBTTTTBBCCEEEESGGGHHHHHHHHHHHHHHS-TTCCEEEESSCC
T ss_pred HHHHHHHHcCCCEEEEeccccccccccccccccccccccccccCCCCCcccchhHHHHHHHHHHHHc-CCCCEEEecCcC
Confidence 4589999999999999873 222111 13332 46788888876 369999999999
Q ss_pred CHHHHHHHHHcCCCEEEechHHHHHhhccChHHHHHHHHHHHHHHHHHHHHhCCCChhhhcc
Q 017718 288 RGTDVFKALALGASGIFIGRPVVYSLAAEGEKGVRRVLEMLREEFELAMALSGCRSLKEITR 349 (367)
Q Consensus 288 ~~~dv~kal~lGAd~V~ig~~~l~~l~~~G~~~v~~~i~~l~~el~~~m~~~G~~si~~l~~ 349 (367)
|++|+.++|++|||+|++||++++ .+. .+++.+.+||+.+|...|+.++.++.+
T Consensus 798 s~~da~~~l~~Ga~~v~vg~~~l~----~~~----~~~~~~~~~l~~~l~~~G~~~i~~l~g 851 (1025)
T 1gte_A 798 SAESGLQFLHSGASVLQVCSAVQN----QDF----TVIQDYCTGLKALLYLKSIEELQGWDG 851 (1025)
T ss_dssp SHHHHHHHHHTTCSEEEESHHHHT----SCT----THHHHHHHHHHHHHHHTTCGGGTTSBT
T ss_pred CHHHHHHHHHcCCCEEEEeecccc----CCc----cHHHHHHHHHHHHHHHcCCCCHHHHhC
Confidence 999999999999999999999986 244 367889999999999999999999987
|
| >1ea0_A Glutamate synthase [NADPH] large chain; oxidoreductase, iron sulphur flavoprotein; HET: OMT FMN AKG; 3.0A {Azospirillum brasilense} SCOP: b.80.4.1 c.1.4.1 d.153.1.1 PDB: 2vdc_A* | Back alignment and structure |
|---|
Probab=99.92 E-value=5.1e-24 Score=234.35 Aligned_cols=301 Identities=18% Similarity=0.171 Sum_probs=203.8
Q ss_pred hHHHHHHHHHhCCccccccccCCCCchhhHHHhHhccccceeeccccCC--CCCCccceeEcCeeeccceEeCcccchhc
Q 017718 7 VMEYEAIAKEKLPKMVFDYYASGAEDQWTLQENRNAFSRILFRPRILID--VSKIDMNTTVLGFKISMPIMIAPTAMQKM 84 (367)
Q Consensus 7 ~~d~~~~A~~~l~~~~~~y~~~ga~~~~t~~~n~~~~~~i~l~pr~l~~--~~~vd~st~i~g~~l~~Pi~iAPm~~~~l 84 (367)
+..+++.|+..- ...|.-+. +.+-.+..-.|+++.+.+..++. ++++|+++ .+..||+++||+++.+
T Consensus 795 i~~l~~~~~~g~-~~~~~~~~-----~~~~~~~~~~~~dl~~~~~~l~~i~~~ev~~~~-----~I~~Pf~isaMS~Gal 863 (1479)
T 1ea0_A 795 IHTLQQAVTNDS-YTTFKKYS-----EQVNKRPPMQLRDLLELRSTKAPVPVDEVESIT-----AIRKRFITPGMSMGAL 863 (1479)
T ss_dssp HHHHHHHHHHTC-HHHHHHHH-----HHHHTSCCCSGGGGEEECCSSCCCCGGGSCCHH-----HHHTTEEEEECCBTTB
T ss_pred HHHHHHHHHhCC-HHHHHHHH-----hhhccCCCCchhhhhhccCCCCCCCcccccccc-----cccCCeEecCcccccc
Confidence 566777776652 22332221 11111334468999988877754 46788776 5789999999998754
Q ss_pred cCChhhHHHHHHHHHcCCceeecCCCCCCHHHHHhh--C--CCceEEEEeecCCHHHHHHHHHHHHHcCCcEEEEecCCC
Q 017718 85 AHPEGEYATARAASAAGTIMTLSSWSTSSVEEVAST--G--PGIRFFQLYVYKDRNVVAQLVRRAERAGFKAIALTVDTP 160 (367)
Q Consensus 85 ~~~~~e~~~a~aa~~~G~~~~vs~~~~~~~e~i~~~--~--~~~~~~QLy~~~d~~~~~~~l~ra~~~G~~ai~itvd~p 160 (367)
.++.+.+++++|.++|+.+.+++.. .+.++.... . ......|+.. +........+ ..++++-|.+.--
T Consensus 864 -S~ea~~aLA~Aa~~aGg~~~tGeGg-~~pe~~~~~~~g~~~~~~IrQ~as-g~FGVn~~~l-----~~a~~ieIKigQG 935 (1479)
T 1ea0_A 864 -SPEAHGTLNVAMNRIGAKSDSGEGG-EDPARFRPDKNGDNWNSAIKQVAS-GRFGVTAEYL-----NQCRELEIKVAQG 935 (1479)
T ss_dssp -CHHHHHHHHHHHHHTTCEEECCTTC-CCGGGSSBCTTSCBCCCSEEEECS-SCTTCCHHHH-----TSCSEEEEECCCT
T ss_pred -CHHHHHHHHHHHHHcCCeeEcCCCc-cCHHHhhhccccchhhhhhhhhcC-CCCCcChHHc-----cccchHHHHHhcc
Confidence 4578889999999999998887653 344443211 1 1235678753 2222222222 3566777766322
Q ss_pred CC--------CchhHHh-hhhcCCCCccccccccccccCccccccchhhHHHhhhccCccc-cH-------HHHHhhc-C
Q 017718 161 RL--------GRREADI-KNRFTLPPFLTLKNFQGLDLGKMDEANDSGLAAYVAGQIDRSL-SW-------KWLQTIT-K 222 (367)
Q Consensus 161 ~~--------g~r~~~~-~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~-~~-------~~l~~~~-~ 222 (367)
.. +.+-.+. ..--.++++.. .++...++++ +| +++|+.+ +
T Consensus 936 AKpG~GG~Lp~~kv~~~IA~~R~~~~Gv~----------------------lisP~~~~d~~s~edl~~~I~~Lk~~~~~ 993 (1479)
T 1ea0_A 936 AKPGEGGQLPGFKVTEMIARLRHSTPGVM----------------------LISPPPHHDIYSIEDLAQLIYDLKQINPD 993 (1479)
T ss_dssp TSTTTCCEECGGGCCHHHHHHHTCCTTCC----------------------EECCSSCTTCSSHHHHHHHHHHHHHHCTT
T ss_pred CCCCcCCCCCHHHHHHHHHHHcCCCCCCC----------------------ccCCCCCcCcCCHHHHHHHHHHHHHhCCC
Confidence 11 0010000 00000111100 1111122233 33 2788888 7
Q ss_pred CCEEEEecC---CHHHHHHHHHcCCcEEEEcCCC-CCC-------CCCccchHHHHHHHHHHh-----cCCCcEEEecCC
Q 017718 223 LPILVKGVL---TAEDARIAVQAGAAGIIVSNHG-ARQ-------LDYVPATIMALEEVVKAT-----QGRIPVFLDGGV 286 (367)
Q Consensus 223 ~Pv~vK~v~---~~~~a~~~~~~G~d~i~vs~~g-g~~-------~~~~~~~~~~l~~i~~~~-----~~~~~via~GGI 286 (367)
+||++|++. ..++|+.+.++|||+|+|+||+ |+. .+++.++...|+++.+.+ ++++|||++|||
T Consensus 994 ~PV~VKlv~~~gi~~~A~~a~~AGAD~IvVsG~eGGTgasp~~~~~~~G~Pt~~aL~ev~~al~~~glr~~VpVIAdGGI 1073 (1479)
T 1ea0_A 994 AKVTVKLVSRSGIGTIAAGVAKANADIILISGNSGGTGASPQTSIKFAGLPWEMGLSEVHQVLTLNRLRHRVRLRTDGGL 1073 (1479)
T ss_dssp CEEEEEEECCTTHHHHHHHHHHTTCSEEEEECTTCCCSSEETTHHHHSCCCHHHHHHHHHHHHHTTTCTTTSEEEEESSC
T ss_pred CCEEEEEcCCCChHHHHHHHHHcCCcEEEEcCCCCCCCCCchhhhcCCchhHHHHHHHHHHHHHHcCCCCCceEEEECCC
Confidence 899999985 3678999999999999999994 432 246778889999998875 347999999999
Q ss_pred CCHHHHHHHHHcCCCEEEechHHHHHhhc---------------------------cChHHHHHHHHHHHHHHHHHHHHh
Q 017718 287 RRGTDVFKALALGASGIFIGRPVVYSLAA---------------------------EGEKGVRRVLEMLREEFELAMALS 339 (367)
Q Consensus 287 ~~~~dv~kal~lGAd~V~ig~~~l~~l~~---------------------------~G~~~v~~~i~~l~~el~~~m~~~ 339 (367)
+++.|++|+|+|||++|++||++|++++| .|+++|.++++.+.+||+.+|..+
T Consensus 1074 rtG~DVakALaLGAdaV~iGTafL~a~gc~~~r~Ch~~~CP~Gvatqdp~l~~~~~gg~e~V~n~l~~l~~ELr~~Ma~l 1153 (1479)
T 1ea0_A 1074 KTGRDIVIAAMLGAEEFGIGTASLIAMGCIMVRQCHSNTCPVGVCVQDDKLRQKFVGTPEKVVNLFTFLAEEVREILAGL 1153 (1479)
T ss_dssp CSHHHHHHHHHTTCSEEECCHHHHHHHTCCCCCCTTTTCCTTSSSCCCTTGGGSCCCCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHcCCCeeeEcHHHHHHHHHHHHhhccCCCCCceeEEeCHHHHhhcCCchHHHHHHHHHHHHHHHHHHHHh
Confidence 99999999999999999999999998854 367899999999999999999999
Q ss_pred CCCChhhhc
Q 017718 340 GCRSLKEIT 348 (367)
Q Consensus 340 G~~si~~l~ 348 (367)
|+++++||+
T Consensus 1154 G~~si~eL~ 1162 (1479)
T 1ea0_A 1154 GFRSLNEVI 1162 (1479)
T ss_dssp TCSCSGGGT
T ss_pred CCCCHHHHh
Confidence 999999994
|
| >4ef8_A Dihydroorotate dehydrogenase; phenyl isothiocyanate, PYRD, oxidoreductase, oxidoreductase-oxidor inhibitor complex; HET: FMN; 1.56A {Leishmania major} PDB: 3gye_A* 3gz3_A* 4ef9_A* 3tro_A* 3tjx_A* | Back alignment and structure |
|---|
Probab=99.91 E-value=2.6e-23 Score=202.67 Aligned_cols=249 Identities=17% Similarity=0.119 Sum_probs=177.1
Q ss_pred eccccCCCCCCccceeEcCeeeccceEeCcccchhccCChhhHHHHHHHHHcCCceee-cCCCC----------------
Q 017718 49 RPRILIDVSKIDMNTTVLGFKISMPIMIAPTAMQKMAHPEGEYATARAASAAGTIMTL-SSWST---------------- 111 (367)
Q Consensus 49 ~pr~l~~~~~vd~st~i~g~~l~~Pi~iAPm~~~~l~~~~~e~~~a~aa~~~G~~~~v-s~~~~---------------- 111 (367)
.|+.-..+++.|++++++|.++++||++|+=... .+....+.+...|..+++ .|...
T Consensus 25 ~~~~~~~~~~~~L~~~~~Gl~~~NPv~lAAG~~~------~~~e~~~~l~~~G~G~v~~ktvt~~pq~GNp~PR~~~~~~ 98 (354)
T 4ef8_A 25 TGGQQMGRGSMSLQVNLLNNTFANPFMNAAGVMC------TTTEELVAMTESASGSLVSKSCTPALREGNPTPRYQALPL 98 (354)
T ss_dssp ---------CCCCCEEETTEEESSSEEECTTSSC------SSHHHHHHHHHSSCSCEEEEEECSSCBCCSCSCCEEEETT
T ss_pred CchhhcCCCCCCcceEECCEECCCCCEeccCCCC------CCHHHHHHHHHcCCCeEEeCcccCcccCCCCCCcEEecch
Confidence 3555556888999999999999999999983221 256778888888887664 22210
Q ss_pred ----------CCHHH----HHhh--C-CCceEEEEeecCCHHHHHHHHHHHH---HcCCcEEEEecCCCCCCchhHHhhh
Q 017718 112 ----------SSVEE----VAST--G-PGIRFFQLYVYKDRNVVAQLVRRAE---RAGFKAIALTVDTPRLGRREADIKN 171 (367)
Q Consensus 112 ----------~~~e~----i~~~--~-~~~~~~QLy~~~d~~~~~~~l~ra~---~~G~~ai~itvd~p~~g~r~~~~~~ 171 (367)
..++. +.+. . ..|.++||+ +.+.+...+.+++++ +.|+++|.||+.||..
T Consensus 99 ~~iN~~G~~n~G~~~~~~~l~~~~~~~~~pvivsI~-G~~~~d~~~~a~~l~~~~~~g~d~ielNisCPn~--------- 168 (354)
T 4ef8_A 99 GSINSMGLPNNGFDFYLAYAAEQHDYGKKPLFLSMS-GLSMRENVEMCKRLAAVATEKGVILELNLSCPNV--------- 168 (354)
T ss_dssp EEEECCCCCBCCHHHHHHHHHHTCCTTTCCEEEEEC-CSSHHHHHHHHHHHHHHHHHHCCEEEEECSSCCS---------
T ss_pred hhhccCCCCCcCHHHHHHHHHHHhhcCCCcEEEEec-cCCHHHHHHHHHHHhhhhhcCCCEEEEeCCCCCC---------
Confidence 12232 3322 1 257889997 678888888999988 5799999999999973
Q ss_pred hcCCCCccccccccccccCccccccchhhHHHhhhccCccc--c-HHHHHhhcCCCEEEEecCC--HHH----HHHHHHc
Q 017718 172 RFTLPPFLTLKNFQGLDLGKMDEANDSGLAAYVAGQIDRSL--S-WKWLQTITKLPILVKGVLT--AED----ARIAVQA 242 (367)
Q Consensus 172 ~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~--~-~~~l~~~~~~Pv~vK~v~~--~~~----a~~~~~~ 242 (367)
|.+ +. ++. +++. . .+++++.+++||+||+..+ .++ ++.+.++
T Consensus 169 ----~gg---~~--------------------l~~--~~e~~~~il~av~~~~~~PV~vKi~p~~d~~~~~~~a~~~~~~ 219 (354)
T 4ef8_A 169 ----PGK---PQ--------------------VAY--DFDAMRQCLTAVSEVYPHSFGVKMPPYFDFAHFDAAAEILNEF 219 (354)
T ss_dssp ----TTS---CC--------------------GGG--SHHHHHHHHHHHHHHCCSCEEEEECCCCSHHHHHHHHHHHHTC
T ss_pred ----CCc---hh--------------------hcc--CHHHHHHHHHHHHHhhCCCeEEEecCCCCHHHHHHHHHHHHhC
Confidence 100 00 000 2222 2 2378888899999999854 222 4455588
Q ss_pred C-CcEEEEcCCCC---------CC-------CCC---c----cchHHHHHHHHHHhcCCCcEEEecCCCCHHHHHHHHHc
Q 017718 243 G-AAGIIVSNHGA---------RQ-------LDY---V----PATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALAL 298 (367)
Q Consensus 243 G-~d~i~vs~~gg---------~~-------~~~---~----~~~~~~l~~i~~~~~~~~~via~GGI~~~~dv~kal~l 298 (367)
| +|+|+++|+.+ +. ..+ | +..++.++++++.. .++|||++|||++++|+.+++.+
T Consensus 220 Gg~d~I~~~NT~~~g~~idi~~~~~~~~~~~~~gGlSG~~i~p~a~~~i~~v~~~~-~~ipII~~GGI~s~~da~~~l~a 298 (354)
T 4ef8_A 220 PKVQFITCINSIGNGLVIDAETESVVIKPKQGFGGLGGRYVLPTALANINAFYRRC-PGKLIFGCGGVYTGEDAFLHVLA 298 (354)
T ss_dssp TTEEEEEECCCEEEEECEETTTTEESCSGGGGEEEEEGGGGHHHHHHHHHHHHHHC-TTSEEEEESCCCSHHHHHHHHHH
T ss_pred CCccEEEEecccCcceeeeccCCccccccccccCCCCCCCCchHHHHHHHHHHHhC-CCCCEEEECCcCCHHHHHHHHHc
Confidence 7 99999987531 10 111 2 23578888888773 47999999999999999999999
Q ss_pred CCCEEEechHHHHHhhccChHHHHHHHHHHHHHHHHHHHHhCCCChhhhcccc
Q 017718 299 GASGIFIGRPVVYSLAAEGEKGVRRVLEMLREEFELAMALSGCRSLKEITRDH 351 (367)
Q Consensus 299 GAd~V~ig~~~l~~l~~~G~~~v~~~i~~l~~el~~~m~~~G~~si~~l~~~~ 351 (367)
|||+||+||++++. |+. +++.++++|+.+|...|+++++|+++..
T Consensus 299 GAd~V~vgra~l~~----GP~----~~~~i~~~l~~~m~~~G~~si~el~G~~ 343 (354)
T 4ef8_A 299 GASMVQVGTALQEE----GPS----IFERLTSELLGVMAKKRYQTLDEFRGKV 343 (354)
T ss_dssp TEEEEEECHHHHHH----CTT----HHHHHHHHHHHHHHHHTCCSGGGTTTCC
T ss_pred CCCEEEEhHHHHHh----CHH----HHHHHHHHHHHHHHHcCCCCHHHHHHHH
Confidence 99999999999873 664 7788999999999999999999999864
|
| >1ofd_A Ferredoxin-dependent glutamate synthase 2; oxidoreductase, complex enzyme, substrate channeling, amidotransferase, flavoprotein, iron-sulphur; HET: FMN AKG; 2.00A {Synechocystis SP} SCOP: b.80.4.1 c.1.4.1 d.153.1.1 PDB: 1llz_A* 1lm1_A* 1llw_A* 1ofe_A* | Back alignment and structure |
|---|
Probab=99.90 E-value=7e-23 Score=225.82 Aligned_cols=273 Identities=19% Similarity=0.151 Sum_probs=191.2
Q ss_pred HhccccceeeccccCC--CCCCccceeEcCeeeccceEeCcccchhccCChhhHHHHHHHHHcCCceeecCCCCCCHHHH
Q 017718 40 RNAFSRILFRPRILID--VSKIDMNTTVLGFKISMPIMIAPTAMQKMAHPEGEYATARAASAAGTIMTLSSWSTSSVEEV 117 (367)
Q Consensus 40 ~~~~~~i~l~pr~l~~--~~~vd~st~i~g~~l~~Pi~iAPm~~~~l~~~~~e~~~a~aa~~~G~~~~vs~~~~~~~e~i 117 (367)
.-.|+++.+.+..++. ++++++++ .+..||+++||+++.+ .++.+.+++++|.++|+.+.+++.. .+.+..
T Consensus 839 ~~~~r~l~~~~~~~~~i~~~ev~~~~-----~I~~Pfii~aMS~Gsl-S~ea~~aLA~Aas~aGg~~~tGeGg-~~pe~~ 911 (1520)
T 1ofd_A 839 VTALRDLLDFNADQPAISLEEVESVE-----SIVKRFCTGGMSLGAL-SREAHETLAIAMNRLGAKSNSGEGG-EDVVRY 911 (1520)
T ss_dssp SCSGGGGEEECCSSCCCCGGGSCCHH-----HHHTTEECCCBCTTTS-CHHHHHHHHHHHHHHTCBCEECTTC-CCGGGG
T ss_pred CcchhhhccccCCCCCCCchhhcccc-----cccCceEecCcCcccc-cHHHHHHHHHHHHHcCCceEeCCCC-CCHHHH
Confidence 3468888888776653 45777665 5789999999998753 3467889999999999999988653 333433
Q ss_pred H-----------hhCC-----------CceEEEEee---cCCHHHHHHHHHHHHHcCCcEEEEecCCCCC--------Cc
Q 017718 118 A-----------STGP-----------GIRFFQLYV---YKDRNVVAQLVRRAERAGFKAIALTVDTPRL--------GR 164 (367)
Q Consensus 118 ~-----------~~~~-----------~~~~~QLy~---~~d~~~~~~~l~ra~~~G~~ai~itvd~p~~--------g~ 164 (367)
. ...| .....|+-. +.+.+. +. .++.+-|.+.--.. +.
T Consensus 912 ~~eir~~~~~~~~~~p~~~~~~nG~~~~~~I~Ql~sg~FGVn~~~----l~-----~ad~IeIKi~QGAKpG~GG~Lp~~ 982 (1520)
T 1ofd_A 912 LTLDDVDSEGNSPTLPHLHGLQNGDTANSAIKQIASGRFGVTPEY----LM-----SGKQLEIKMAQGAKPGEGGQLPGK 982 (1520)
T ss_dssp SCCCCCCTTSCCTTSTTCCSCCTTCCCCCSEEEECTTCTTCCHHH----HH-----HCSEEEEECCCTTSTTSCCEECGG
T ss_pred HhhhccccccccccccccccccCcchHHHHHHHhcCCCCccChhh----cc-----chHHHHHHHhccCCCCCCCCCCHH
Confidence 2 0011 135678732 233232 22 26667766532111 00
Q ss_pred hh----HHhhhhcCCCCccccccccccccCccccccchhhHHHhhhccCccc-cH-------HHHHhhc-CCCEEEEecC
Q 017718 165 RE----ADIKNRFTLPPFLTLKNFQGLDLGKMDEANDSGLAAYVAGQIDRSL-SW-------KWLQTIT-KLPILVKGVL 231 (367)
Q Consensus 165 r~----~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~-~~-------~~l~~~~-~~Pv~vK~v~ 231 (367)
+- +.+| .+|++.. .+....++++ +| +++|+.+ ++||++|++.
T Consensus 983 kV~~~iA~~R---~~~~Gv~----------------------lisP~~~~d~~s~edl~~~I~~Lk~~~~~~PV~VKlv~ 1037 (1520)
T 1ofd_A 983 KVSEYIAMLR---RSKPGVT----------------------LISPPPHHDIYSIEDLAQLIYDLHQINPEAQVSVKLVA 1037 (1520)
T ss_dssp GCCHHHHHHH---TSCTTCC----------------------EECCSSCTTCSSHHHHHHHHHHHHHHCTTSEEEEEEEC
T ss_pred HHHHHHHHHc---CCCCCCC----------------------eeCCCCCcCcCCHHHHHHHHHHHHHhCCCCCEEEEecC
Confidence 00 0000 0111100 1111122333 23 2788888 8999999985
Q ss_pred ---CHHHHHHHHHcCCcEEEEcCCCC-CC-------CCCccchHHHHHHHHHHh-----cCCCcEEEecCCCCHHHHHHH
Q 017718 232 ---TAEDARIAVQAGAAGIIVSNHGA-RQ-------LDYVPATIMALEEVVKAT-----QGRIPVFLDGGVRRGTDVFKA 295 (367)
Q Consensus 232 ---~~~~a~~~~~~G~d~i~vs~~gg-~~-------~~~~~~~~~~l~~i~~~~-----~~~~~via~GGI~~~~dv~ka 295 (367)
..++|+.+.++|||+|+|+||+| +. .+++.++...|+++.+.+ ++++|||++|||+++.|++|+
T Consensus 1038 ~~gi~~~A~~a~kAGAD~IvVsG~eGGTgasp~~~~~~~GlPt~~aL~ev~~al~~~glr~~IpVIAdGGIrtG~DVakA 1117 (1520)
T 1ofd_A 1038 EIGIGTIAAGVAKANADIIQISGHDGGTGASPLSSIKHAGSPWELGVTEVHRVLMENQLRDRVLLRADGGLKTGWDVVMA 1117 (1520)
T ss_dssp STTHHHHHHHHHHTTCSEEEEECTTCCCSSEEHHHHHHBCCCHHHHHHHHHHHHHHTTCGGGCEEEEESSCCSHHHHHHH
T ss_pred CCChHHHHHHHHHcCCCEEEEeCCCCccCCCcchhhcCCchhHHHHHHHHHHHHHhcCCCCCceEEEECCCCCHHHHHHH
Confidence 35789999999999999999954 32 246778889999998765 347999999999999999999
Q ss_pred HHcCCCEEEechHHHHHhhc---------------------------cChHHHHHHHHHHHHHHHHHHHHhCCCChhhhc
Q 017718 296 LALGASGIFIGRPVVYSLAA---------------------------EGEKGVRRVLEMLREEFELAMALSGCRSLKEIT 348 (367)
Q Consensus 296 l~lGAd~V~ig~~~l~~l~~---------------------------~G~~~v~~~i~~l~~el~~~m~~~G~~si~~l~ 348 (367)
|+|||++|++||++|++++| .|+++|.++++.+.+||+.+|..+|+++++||+
T Consensus 1118 LaLGAdaV~iGTafL~algc~~~r~Ch~~~CP~Gvatqdp~L~~~~~gg~e~V~n~l~~l~~ELr~~Ma~lG~~si~eL~ 1197 (1520)
T 1ofd_A 1118 ALMGAEEYGFGSIAMIAEGCIMARVCHTNNCPVGVATQQERLRQRFKGVPGQVVNFFYFIAEEVRSLLAHLGYRSLDDII 1197 (1520)
T ss_dssp HHTTCSEEECSHHHHHHTTCCCCCCGGGTCCTTSSSCCCHHHHTTCCCCHHHHHHHHHHHHHHHHHHHHHHTCSCGGGTT
T ss_pred HHcCCCeeEEcHHHHHHHHHHHHHhccCCCCCceeEeeCHHHHhhcCCcHHHHHHHHHHHHHHHHHHHHHhCCCCHHHHh
Confidence 99999999999999998754 267899999999999999999999999999995
Q ss_pred -cccee
Q 017718 349 -RDHIV 353 (367)
Q Consensus 349 -~~~l~ 353 (367)
+..+.
T Consensus 1198 gr~dll 1203 (1520)
T 1ofd_A 1198 GRTDLL 1203 (1520)
T ss_dssp TCGGGE
T ss_pred CcceEE
Confidence 44443
|
| >1vhn_A Putative flavin oxidoreducatase; structural genomics, unknown function; HET: FMN; 1.59A {Thermotoga maritima} SCOP: c.1.4.1 | Back alignment and structure |
|---|
Probab=99.90 E-value=5.8e-24 Score=205.09 Aligned_cols=238 Identities=20% Similarity=0.221 Sum_probs=176.4
Q ss_pred eeccceEeCcccchhccCChhhHHHHHHHHHcCCceeecCCCCCC---------HHHHHhhCCCceEEEEeecCCHHHHH
Q 017718 69 KISMPIMIAPTAMQKMAHPEGEYATARAASAAGTIMTLSSWSTSS---------VEEVASTGPGIRFFQLYVYKDRNVVA 139 (367)
Q Consensus 69 ~l~~Pi~iAPm~~~~l~~~~~e~~~a~aa~~~G~~~~vs~~~~~~---------~e~i~~~~~~~~~~QLy~~~d~~~~~ 139 (367)
++++||++|||++.+ +.++++.+++.|..++++++.+.. .+.+......+.++||+ +.+++...
T Consensus 2 ~l~nri~~APM~~~t------~~~~r~~~~~~G~gli~te~~~~~~~~~~~~~~~~~l~~~~~~~~~~QL~-g~~~~~~~ 74 (318)
T 1vhn_A 2 SLEVKVGLAPMAGYT------DSAFRTLAFEWGADFAFSEMVSAKGFLMNSQKTEELLPQPHERNVAVQIF-GSEPNELS 74 (318)
T ss_dssp ---CEEEECCCTTTC------SHHHHHHHHTTTCCCEECSCEEHHHHHTTCHHHHHHSCCTTCTTEEEEEE-CSCHHHHH
T ss_pred ccCCCEEECCCCCCC------cHHHHHHHHHHCcCEEEeCCEEEcccccCCHhHHHhhhCcCCCeEEEEeC-CCCHHHHH
Confidence 578999999998543 578999999999999888874321 11220112268999999 78999999
Q ss_pred HHHHHHHHcCCcEEEEecCCCCCCchhHHhhhhcCCCCccccccccccccCccccccchhhHHHhhhccCccccHH---H
Q 017718 140 QLVRRAERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLTLKNFQGLDLGKMDEANDSGLAAYVAGQIDRSLSWK---W 216 (367)
Q Consensus 140 ~~l~ra~~~G~~ai~itvd~p~~g~r~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~---~ 216 (367)
+.+++++++ +++|.||++||....|. .++ ++ .+. .++.+.|+ +
T Consensus 75 ~aa~~a~~~-~d~Iein~gcP~~~~r~----~~~-----------------------G~----~l~--~~~~~~~eiv~~ 120 (318)
T 1vhn_A 75 EAARILSEK-YKWIDLNAGCPVRKVVK----EGA-----------------------GG----ALL--KDLRHFRYIVRE 120 (318)
T ss_dssp HHHHHHTTT-CSEEEEEECCCCHHHHH----TTC-----------------------GG----GGG--SCHHHHHHHHHH
T ss_pred HHHHHHHHh-CCEEEEECCCCcHhcCC----CCc-----------------------cc----chh--hCHHHHHHHHHH
Confidence 999999999 99999999999853221 111 00 111 14445454 8
Q ss_pred HHhhcCCCEEEEecC------CHHHHHHHHHcCCcEEEEcCCCCCCC--CCccchHHHHHHHHHHhcCCCcEEEecCCCC
Q 017718 217 LQTITKLPILVKGVL------TAEDARIAVQAGAAGIIVSNHGARQL--DYVPATIMALEEVVKATQGRIPVFLDGGVRR 288 (367)
Q Consensus 217 l~~~~~~Pv~vK~v~------~~~~a~~~~~~G~d~i~vs~~gg~~~--~~~~~~~~~l~~i~~~~~~~~~via~GGI~~ 288 (367)
+++.+++||++|... ..+.++.+.++|+|+|+| ||++.. ..+++.++.++++++ ++|||++|||++
T Consensus 121 v~~~~~~pv~vKir~G~~~~~~~~~a~~l~~~G~d~i~v--~g~~~~~~~~~~~~~~~i~~i~~----~ipVi~~GgI~s 194 (318)
T 1vhn_A 121 LRKSVSGKFSVKTRLGWEKNEVEEIYRILVEEGVDEVFI--HTRTVVQSFTGRAEWKALSVLEK----RIPTFVSGDIFT 194 (318)
T ss_dssp HHHHCSSEEEEEEESCSSSCCHHHHHHHHHHTTCCEEEE--ESSCTTTTTSSCCCGGGGGGSCC----SSCEEEESSCCS
T ss_pred HHHhhCCCEEEEecCCCChHHHHHHHHHHHHhCCCEEEE--cCCCccccCCCCcCHHHHHHHHc----CCeEEEECCcCC
Confidence 888889999999652 136799999999999999 455433 245566666666644 799999999999
Q ss_pred HHHHHHHHH-cCCCEEEechHHH-----HHhhcc----Ch---HHHHHHHHHHHHHHHHHHHHhCCC-Chhhhccccee
Q 017718 289 GTDVFKALA-LGASGIFIGRPVV-----YSLAAE----GE---KGVRRVLEMLREEFELAMALSGCR-SLKEITRDHIV 353 (367)
Q Consensus 289 ~~dv~kal~-lGAd~V~ig~~~l-----~~l~~~----G~---~~v~~~i~~l~~el~~~m~~~G~~-si~~l~~~~l~ 353 (367)
++|+.++++ .|||+||+||+++ +..... |. .++.++++.++++++..|...|.. .+.+++++..+
T Consensus 195 ~~da~~~l~~~gad~V~iGR~~l~~P~l~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~ 273 (318)
T 1vhn_A 195 PEDAKRALEESGCDGLLVARGAIGRPWIFKQIKDFLRSGKYSEPSREEILRTFERHLELLIKTKGERKAVVEMRKFLAG 273 (318)
T ss_dssp HHHHHHHHHHHCCSEEEESGGGTTCTTHHHHHHHHHHHSCCCCCCHHHHHHHHHHHHHHHHHHHCHHHHHHHHHTTHHH
T ss_pred HHHHHHHHHcCCCCEEEECHHHHhCcchHHHHHHHHhCCCCCCCCHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHH
Confidence 999999999 7999999999753 333322 43 467889999999999999999975 78888887654
|
| >3ffs_A Inosine-5-monophosphate dehydrogenase; beta-alpha barrel, TIM fold, oxidoreductase; 3.19A {Cryptosporidium parvum} | Back alignment and structure |
|---|
Probab=99.90 E-value=3.3e-22 Score=197.49 Aligned_cols=253 Identities=21% Similarity=0.281 Sum_probs=172.1
Q ss_pred ccccceeecccc-CCCCCCccceeEc-CeeeccceEeCcccchhccCChhhHHHHHHHHHcCCceeecCCCCCCHHHHHh
Q 017718 42 AFSRILFRPRIL-IDVSKIDMNTTVL-GFKISMPIMIAPTAMQKMAHPEGEYATARAASAAGTIMTLSSWSTSSVEEVAS 119 (367)
Q Consensus 42 ~~~~i~l~pr~l-~~~~~vd~st~i~-g~~l~~Pi~iAPm~~~~l~~~~~e~~~a~aa~~~G~~~~vs~~~~~~~e~i~~ 119 (367)
.||++.|+|..- ...+++|++|.|- .+.+..||+-|||++.+ +..||.+.+++|...+++. ..++|++.+
T Consensus 11 t~ddvll~P~~~~~~~~~v~l~t~lt~~l~l~~PIi~a~M~~Vs------~~~lA~Ava~aGGlGvi~~--~~~~e~~~~ 82 (400)
T 3ffs_A 11 TFEDILLVPNYSEVLPREVSLETKLTKNVSLKIPLISSAMDTVT------EHLMAVGMARLGGIGIIHK--NMDMESQVN 82 (400)
T ss_dssp CGGGEEECCCCBCSCGGGCCCCEESSSSCEESSSEEECSCTTTC------SSHHHHHHHTTTCEEEECS--SSCHHHHHH
T ss_pred CceeEEEecCCCccCHHHccCccchhcccCCCCCEEeCCCCCcC------cHHHHHHHHHCCCEEEeCC--CCCHHHHHH
Confidence 599999999654 3447899999985 58899999999998654 5589999999999888874 456665432
Q ss_pred h-------CC----CceE--EEEeec-CCHHHH------------------------------HHHHHHHHHcCCcEEEE
Q 017718 120 T-------GP----GIRF--FQLYVY-KDRNVV------------------------------AQLVRRAERAGFKAIAL 155 (367)
Q Consensus 120 ~-------~~----~~~~--~QLy~~-~d~~~~------------------------------~~~l~ra~~~G~~ai~i 155 (367)
. .. .|+- ..|+.. .+.+.. .+.++.+.++|++.+++
T Consensus 83 ~i~~vk~~~~g~~~~P~~~~~nL~~~~~~~~~~~~~~~~~~~p~~~~d~~g~l~v~~~v~~~~~e~~~~lveaGvdvIvl 162 (400)
T 3ffs_A 83 EVLKVKNWISNLEKNESTPDQNLDKESTDGKDTKSNNNIDAYSNENLDNKGRLRVGAAIGVNEIERAKLLVEAGVDVIVL 162 (400)
T ss_dssp HHHHHHCCC-------------------------------CCTTCCBCTTSSBCCEEEECCC-CHHHHHHHHHTCSEEEE
T ss_pred HHHHHHhhccCcccCCCCccccccCCCCCHHHHHHHHHhhhCcchhhccccceeEEeecCCCHHHHHHHHHHcCCCEEEE
Confidence 1 11 1111 122100 000000 23334444445554443
Q ss_pred ecCCCCCCchhHHhhhhcCCCCccccccccccccCccccccchhhHHHhhhccCcc--cc-HHHHHhhcCCCEEEEecCC
Q 017718 156 TVDTPRLGRREADIKNRFTLPPFLTLKNFQGLDLGKMDEANDSGLAAYVAGQIDRS--LS-WKWLQTITKLPILVKGVLT 232 (367)
Q Consensus 156 tvd~p~~g~r~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~--~~-~~~l~~~~~~Pv~vK~v~~ 232 (367)
+... .++. .+ ++++++.+++||+++.+.+
T Consensus 163 dta~------------------------------------------------G~~~~~~e~I~~ik~~~~i~Vi~g~V~t 194 (400)
T 3ffs_A 163 DSAH------------------------------------------------GHSLNIIRTLKEIKSKMNIDVIVGNVVT 194 (400)
T ss_dssp CCSC------------------------------------------------CSBHHHHHHHHHHHTTCCCEEEEEEECS
T ss_pred eCCC------------------------------------------------CCcccHHHHHHHHHhcCCCeEEEeecCC
Confidence 2110 0111 11 2377777799999999999
Q ss_pred HHHHHHHHHcCCcEEEEcCCCCC-----CC-CCccchHHHHHHHHHHhcC-CCcEEEecCCCCHHHHHHHHHcCCCEEEe
Q 017718 233 AEDARIAVQAGAAGIIVSNHGAR-----QL-DYVPATIMALEEVVKATQG-RIPVFLDGGVRRGTDVFKALALGASGIFI 305 (367)
Q Consensus 233 ~~~a~~~~~~G~d~i~vs~~gg~-----~~-~~~~~~~~~l~~i~~~~~~-~~~via~GGI~~~~dv~kal~lGAd~V~i 305 (367)
.++|+.+.++|+|+|++++.+|+ .. ..+.+.+..++++.+.++. ++|||++|||+++.|+.|+|++||++||+
T Consensus 195 ~e~A~~a~~aGAD~I~vG~g~Gs~~~tr~~~g~g~p~~~al~~v~~~~~~~~IPVIA~GGI~~~~di~kalalGAd~V~v 274 (400)
T 3ffs_A 195 EEATKELIENGADGIKVGIGPGSICTTRIVAGVGVPQITAIEKCSSVASKFGIPIIADGGIRYSGDIGKALAVGASSVMI 274 (400)
T ss_dssp HHHHHHHHHTTCSEEEECC---------CCSCBCCCHHHHHHHHHHHHTTTTCCEEEESCCCSHHHHHHHHTTTCSEEEE
T ss_pred HHHHHHHHHcCCCEEEEeCCCCcCcccccccccchhHHHHHHHHHHHHHhcCCCEEecCCCCCHHHHHHHHHcCCCEEEE
Confidence 99999999999999999543332 11 2356788999999877543 79999999999999999999999999999
Q ss_pred chHHH--------------------HHhhc--------------cC-------hH----------HHHHHHHHHHHHHHH
Q 017718 306 GRPVV--------------------YSLAA--------------EG-------EK----------GVRRVLEMLREEFEL 334 (367)
Q Consensus 306 g~~~l--------------------~~l~~--------------~G-------~~----------~v~~~i~~l~~el~~ 334 (367)
|++|+ |+++. ++ ++ .+.+++..|...|+.
T Consensus 275 Gt~f~~t~Es~~~~~~~~g~~~k~y~Gm~s~~am~~~~~~ry~~~~~~~~~~~~eG~~~~v~~~g~~~~~~~~~~~glr~ 354 (400)
T 3ffs_A 275 GSILAGTEESPGEKELIGDTVYKYYRGMGSVGAMKSGSGDRYFQEKRPENKMVPEGIEGRVKYKGEMEGVVYQLVGGLRS 354 (400)
T ss_dssp CGGGTTBTTSSCCEEESSSSEEEC-----------------------------------CEECCBCHHHHHHHHHHHHHH
T ss_pred ChHHhcCCCCCchhhhcCCeeeeeecCcchHHHHhccccchhhcccccccccCCCCcEEecCCCCCHHHHHHHHHHHHHH
Confidence 99883 33321 00 12 277899999999999
Q ss_pred HHHHhCCCChhhhccc
Q 017718 335 AMALSGCRSLKEITRD 350 (367)
Q Consensus 335 ~m~~~G~~si~~l~~~ 350 (367)
.|.++|+.+|.||+..
T Consensus 355 ~~~y~G~~~i~el~~~ 370 (400)
T 3ffs_A 355 CMGYLGSASIEELWKK 370 (400)
T ss_dssp HHHHTTCSSHHHHHHH
T ss_pred hhhhcCcccHHHHHhC
Confidence 9999999999999754
|
| >4fo4_A Inosine 5'-monophosphate dehydrogenase; structural genomics, IMPDH, IMP, mycophenolic acid, MOA; HET: IMP MOA; 2.03A {Vibrio cholerae o1 biovar el tor} PDB: 4ff0_A* 4hlv_A* 4fez_A | Back alignment and structure |
|---|
Probab=99.90 E-value=1.6e-22 Score=197.91 Aligned_cols=254 Identities=20% Similarity=0.262 Sum_probs=181.4
Q ss_pred ccccceeecccc-CCCCCCccceeEc-CeeeccceEeCcccchhccCChhhHHHHHHHHHcCCceeecCCCCCCHHHHHh
Q 017718 42 AFSRILFRPRIL-IDVSKIDMNTTVL-GFKISMPIMIAPTAMQKMAHPEGEYATARAASAAGTIMTLSSWSTSSVEEVAS 119 (367)
Q Consensus 42 ~~~~i~l~pr~l-~~~~~vd~st~i~-g~~l~~Pi~iAPm~~~~l~~~~~e~~~a~aa~~~G~~~~vs~~~~~~~e~i~~ 119 (367)
.||++.|+|..- .+.+++|++|+|. .+.+..||+.|||...+ +..++.+..+.|...++.. +.+.|+..+
T Consensus 15 ~fddv~lvp~~~~~~~~~vdl~t~lt~~~~l~~Pii~apM~~vs------~~~lA~avA~aGGlg~i~~--~~s~e~~~~ 86 (366)
T 4fo4_A 15 TFDDVLLVPAHSTVLPNTADLRTRLTKNIALNIPMVSASMDTVT------EARLAIALAQEGGIGFIHK--NMSIEQQAA 86 (366)
T ss_dssp CGGGEEECCCCCCCCGGGCBCCEEEETTEEESSSEEECCCTTTC------SHHHHHHHHHTTCEEEECS--SSCHHHHHH
T ss_pred CcceEEEECCCCCCChhhcccceecccccccCCCEEeCCCCCCC------hHHHHHHHHHcCCceEeec--CCCHHHHHH
Confidence 699999999722 2446899999997 68999999999998654 6789988888776655542 345555322
Q ss_pred h----CC-CceEEEEeecCCHHHHHHHHHHHHHcCCcEEEEecCCCCCCchhHHhhhhcCCCCccccccccccccCcccc
Q 017718 120 T----GP-GIRFFQLYVYKDRNVVAQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLTLKNFQGLDLGKMDE 194 (367)
Q Consensus 120 ~----~~-~~~~~QLy~~~d~~~~~~~l~ra~~~G~~ai~itvd~p~~g~r~~~~~~~~~~p~~~~~~~~~~~~~~~~~~ 194 (367)
. .. .+..+.+-...++ ...+.++.+.++|++.+.++.- .. . |
T Consensus 87 ~i~~vk~~~~l~vga~vg~~~-~~~~~~~~lieaGvd~I~idta--~G-~-----------~------------------ 133 (366)
T 4fo4_A 87 QVHQVKISGGLRVGAAVGAAP-GNEERVKALVEAGVDVLLIDSS--HG-H-----------S------------------ 133 (366)
T ss_dssp HHHHHHTTTSCCCEEECCSCT-TCHHHHHHHHHTTCSEEEEECS--CT-T-----------S------------------
T ss_pred HHHHHHhcCceeEEEEeccCh-hHHHHHHHHHhCCCCEEEEeCC--CC-C-----------C------------------
Confidence 1 11 2222333222222 2345677888899998877431 10 0 0
Q ss_pred ccchhhHHHhhhccCcccc-HHHHHhhc-CCCEEEEecCCHHHHHHHHHcCCcEEEEcCCCCCC------CCCccchHHH
Q 017718 195 ANDSGLAAYVAGQIDRSLS-WKWLQTIT-KLPILVKGVLTAEDARIAVQAGAAGIIVSNHGARQ------LDYVPATIMA 266 (367)
Q Consensus 195 ~~~~~~~~~~~~~~d~~~~-~~~l~~~~-~~Pv~vK~v~~~~~a~~~~~~G~d~i~vs~~gg~~------~~~~~~~~~~ 266 (367)
+..++ ++++++.+ ++||+++.+.+.++|+.+.++|+|+|.++..+|.. ...+.+.+..
T Consensus 134 --------------~~~~~~I~~ik~~~p~v~Vi~G~v~t~e~A~~a~~aGAD~I~vG~gpGs~~~tr~~~g~g~p~~~~ 199 (366)
T 4fo4_A 134 --------------EGVLQRIRETRAAYPHLEIIGGNVATAEGARALIEAGVSAVKVGIGPGSICTTRIVTGVGVPQITA 199 (366)
T ss_dssp --------------HHHHHHHHHHHHHCTTCEEEEEEECSHHHHHHHHHHTCSEEEECSSCSTTBCHHHHHCCCCCHHHH
T ss_pred --------------HHHHHHHHHHHHhcCCCceEeeeeCCHHHHHHHHHcCCCEEEEecCCCCCCCcccccCcccchHHH
Confidence 00011 34777777 78999998999999999999999999995333321 1345678888
Q ss_pred HHHHHHHhc-CCCcEEEecCCCCHHHHHHHHHcCCCEEEechHHHH--------------------Hhhc-----c----
Q 017718 267 LEEVVKATQ-GRIPVFLDGGVRRGTDVFKALALGASGIFIGRPVVY--------------------SLAA-----E---- 316 (367)
Q Consensus 267 l~~i~~~~~-~~~~via~GGI~~~~dv~kal~lGAd~V~ig~~~l~--------------------~l~~-----~---- 316 (367)
|.++.+..+ .++|||++|||+++.|+.|+|++|||+|++||+|+- +++. +
T Consensus 200 l~~v~~~~~~~~iPVIA~GGI~~~~di~kala~GAd~V~vGs~f~~t~Esp~~~~~~~g~~~k~y~gm~s~~am~~~~~~ 279 (366)
T 4fo4_A 200 IADAAGVANEYGIPVIADGGIRFSGDISKAIAAGASCVMVGSMFAGTEEAPGEVILYQGRSYKAYRGMGSLGAMSKGSSD 279 (366)
T ss_dssp HHHHHHHHGGGTCCEEEESCCCSHHHHHHHHHTTCSEEEESTTTTTBTTSSSCCEEETTEEEEEEECTTSHHHHCC----
T ss_pred HHHHHHHHhhcCCeEEEeCCCCCHHHHHHHHHcCCCEEEEChHhhcCCCCCchhhhhCCceeEEeeccccHHHHhccccc
Confidence 988887543 279999999999999999999999999999998843 1110 0
Q ss_pred -----C-------hH----------HHHHHHHHHHHHHHHHHHHhCCCChhhhccc
Q 017718 317 -----G-------EK----------GVRRVLEMLREEFELAMALSGCRSLKEITRD 350 (367)
Q Consensus 317 -----G-------~~----------~v~~~i~~l~~el~~~m~~~G~~si~~l~~~ 350 (367)
+ ++ .+.+++..|...|+..|.++|+.+|.||+..
T Consensus 280 ry~~~~~~~~~~~~eg~~~~v~~~g~~~~~~~~~~~glr~~~~y~g~~~~~~~~~~ 335 (366)
T 4fo4_A 280 RYFQTDNAADKLVPEGIEGRIAYKGHLKEIIHQQMGGLRSCMGLTGSATVEDLRTK 335 (366)
T ss_dssp -----------CCCSBCEEEEECCBCHHHHHHHHHHHHHHHHHHHTCSBHHHHHHH
T ss_pred chhccccccccccCCCcEEecCCCCCHHHHHHHHHHHHHHhhhccCcccHHHHHhC
Confidence 0 01 2788999999999999999999999999853
|
| >1ep3_A Dihydroorotate dehydrogenase B (PYRD subunit); heterotetramer, alpha-beta barrel, beta sandwich, FAD domain alpha/beta NADP domain; HET: FMN FAD; 2.10A {Lactococcus lactis} SCOP: c.1.4.1 PDB: 1ep2_A* 1ep1_A* | Back alignment and structure |
|---|
Probab=99.89 E-value=2.8e-22 Score=191.98 Aligned_cols=240 Identities=18% Similarity=0.192 Sum_probs=169.7
Q ss_pred CCCCccceeEcCeeeccceEeCc-ccchhccCChhhHHHHHHHHHcCCceee-------------------------cCC
Q 017718 56 VSKIDMNTTVLGFKISMPIMIAP-TAMQKMAHPEGEYATARAASAAGTIMTL-------------------------SSW 109 (367)
Q Consensus 56 ~~~vd~st~i~g~~l~~Pi~iAP-m~~~~l~~~~~e~~~a~aa~~~G~~~~v-------------------------s~~ 109 (367)
.+++|++++|+|+++++||++|| |.+.+ + .+.+.+.+.|..+++ +..
T Consensus 2 ~~~~~l~~~~~g~~l~npi~~aag~~~~~------~-~~~~~~~~~g~G~~~~~si~~~p~~g~~~p~l~~~~~g~~~~~ 74 (311)
T 1ep3_A 2 TENNRLSVKLPGLDLKNPIIPASGCFGFG------E-EYAKYYDLNKLGSIMVKATTLHPRFGNPTPRVAETASGMLNAI 74 (311)
T ss_dssp CCCTTTCEEETTEEESSSEEECTTSSTTS------T-TGGGTSCGGGSSCEEEEEECSSCBCCCCSCCEEEETTEEEECC
T ss_pred CCCCccceEECCEECCCCcEECCCCCCCC------H-HHHHHHHhcCCCEEEeCeeccCccCCCCCCeEEECCccccccc
Confidence 36899999999999999999999 54322 1 234444344444433 111
Q ss_pred --CCCCHHHH--------HhhC-CCceEEEEeecCCHHHHHHHHHHHHH-cCCcEEEEecCCCCCCchhHHhhhhcCCCC
Q 017718 110 --STSSVEEV--------ASTG-PGIRFFQLYVYKDRNVVAQLVRRAER-AGFKAIALTVDTPRLGRREADIKNRFTLPP 177 (367)
Q Consensus 110 --~~~~~e~i--------~~~~-~~~~~~QLy~~~d~~~~~~~l~ra~~-~G~~ai~itvd~p~~g~r~~~~~~~~~~p~ 177 (367)
.+...++. .+.. ..+.++||. ..+.+...+.++++++ +|++++.+|+.||..-.| +.
T Consensus 75 g~~~~~~~~~~~~~~~~~~~~~~~~p~~v~l~-~~~~~~~~~~a~~~~~~~g~d~iei~~~~p~~~~g------~~---- 143 (311)
T 1ep3_A 75 GLQNPGLEVIMTEKLPWLNENFPELPIIANVA-GSEEADYVAVCAKIGDAANVKAIELNISCPNVKHG------GQ---- 143 (311)
T ss_dssp CCCBCCHHHHHHTHHHHHHHHCTTSCEEEEEC-CSSHHHHHHHHHHHTTSTTEEEEEEECCSEEGGGT------TE----
T ss_pred CCCCcCHHHHHHHHHHHHHhcCCCCcEEEEEc-CCCHHHHHHHHHHHhccCCCCEEEEeCCCCCCCCc------hh----
Confidence 11233332 2213 368899997 4577888888999988 999999999999863100 00
Q ss_pred ccccccccccccCccccccchhhHHHhhhccCccc--c-HHHHHhhcCCCEEEEecC---C-HHHHHHHHHcCCcEEEEc
Q 017718 178 FLTLKNFQGLDLGKMDEANDSGLAAYVAGQIDRSL--S-WKWLQTITKLPILVKGVL---T-AEDARIAVQAGAAGIIVS 250 (367)
Q Consensus 178 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~--~-~~~l~~~~~~Pv~vK~v~---~-~~~a~~~~~~G~d~i~vs 250 (367)
. .. .++.+ . .+++++.+++||++|... + .+.++.+.++|+|+|+++
T Consensus 144 --~-----------------------~g--~~~~~~~eii~~v~~~~~~pv~vk~~~~~~~~~~~a~~l~~~G~d~i~v~ 196 (311)
T 1ep3_A 144 --A-----------------------FG--TDPEVAAALVKACKAVSKVPLYVKLSPNVTDIVPIAKAVEAAGADGLTMI 196 (311)
T ss_dssp --E-----------------------GG--GCHHHHHHHHHHHHHHCSSCEEEEECSCSSCSHHHHHHHHHTTCSEEEEC
T ss_pred --h-----------------------hc--CCHHHHHHHHHHHHHhcCCCEEEEECCChHHHHHHHHHHHHcCCCEEEEe
Confidence 0 00 01222 1 237787779999999873 3 455899999999999998
Q ss_pred C-------CCCCCC---------CCccc----hHHHHHHHHHHhcCCCcEEEecCCCCHHHHHHHHHcCCCEEEechHHH
Q 017718 251 N-------HGARQL---------DYVPA----TIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFIGRPVV 310 (367)
Q Consensus 251 ~-------~gg~~~---------~~~~~----~~~~l~~i~~~~~~~~~via~GGI~~~~dv~kal~lGAd~V~ig~~~l 310 (367)
| |+.+.. ..++. .++.+.++++.+ ++|||++|||++++|+.+++++|||+|++||+++
T Consensus 197 ~~~~g~~i~~~~~~~~~~~~~~g~~g~~~~~~~~~~i~~i~~~~--~ipvia~GGI~~~~d~~~~l~~GAd~V~vg~~~l 274 (311)
T 1ep3_A 197 NTLMGVRFDLKTRQPILANITGGLSGPAIKPVALKLIHQVAQDV--DIPIIGMGGVANAQDVLEMYMAGASAVAVGTANF 274 (311)
T ss_dssp CCEEECCBCTTTCSBSSTTSCEEEESGGGHHHHHHHHHHHHTTC--SSCEEECSSCCSHHHHHHHHHHTCSEEEECTHHH
T ss_pred CCCcccccCcccCCccccCCCCcccCccchHHHHHHHHHHHHhc--CCCEEEECCcCCHHHHHHHHHcCCCEEEECHHHH
Confidence 7 321110 11222 246677776655 7999999999999999999999999999999998
Q ss_pred HHhhccChHHHHHHHHHHHHHHHHHHHHhCCCChhhhcccc
Q 017718 311 YSLAAEGEKGVRRVLEMLREEFELAMALSGCRSLKEITRDH 351 (367)
Q Consensus 311 ~~l~~~G~~~v~~~i~~l~~el~~~m~~~G~~si~~l~~~~ 351 (367)
. +++ +++.++++++.+|...|++|++|+++..
T Consensus 275 ~-----~p~----~~~~i~~~l~~~~~~~g~~~~~~~~g~~ 306 (311)
T 1ep3_A 275 A-----DPF----VCPKIIDKLPELMDQYRIESLESLIQEV 306 (311)
T ss_dssp H-----CTT----HHHHHHHHHHHHHHHTTCSCHHHHHHHH
T ss_pred c-----CcH----HHHHHHHHHHHHHHHcCCCCHHHHhChh
Confidence 6 443 6778889999999999999999998754
|
| >3oix_A Putative dihydroorotate dehydrogenase; dihydrooro oxidase; TIM barrel, oxidoreductase; HET: MLY FMN; 2.40A {Streptococcus mutans} | Back alignment and structure |
|---|
Probab=99.89 E-value=1.4e-21 Score=189.97 Aligned_cols=240 Identities=16% Similarity=0.166 Sum_probs=175.0
Q ss_pred CCccceeEcCeeeccceEeCcccchhccCChhhHHHHHHHHHcCCceeec-CCCCC------------------------
Q 017718 58 KIDMNTTVLGFKISMPIMIAPTAMQKMAHPEGEYATARAASAAGTIMTLS-SWSTS------------------------ 112 (367)
Q Consensus 58 ~vd~st~i~g~~l~~Pi~iAPm~~~~l~~~~~e~~~a~aa~~~G~~~~vs-~~~~~------------------------ 112 (367)
..|++++++|.++++||++|+=... .+....+.+...|..+++. |....
T Consensus 35 m~~L~~~~~Gl~~~NPv~lAaG~~~------~~~e~~~~~~~~G~G~v~~ktvt~~pq~gnp~PR~~~~~~~~iN~~G~~ 108 (345)
T 3oix_A 35 MVSTHTTIGSFDFDNCLMNAAGVYC------MTREELAAIDHSEAGSFVTXTGTLEERAGNPQPRYADTKLGSINSMGLP 108 (345)
T ss_dssp -CCCCEEETTEEESCSEEECTTSSC------SSHHHHHHHHTSSCSBCBCCCBCSSCBCCSCSCCEEECSSEEEECCCCC
T ss_pred cCCcCeEECCEECCCCCEEcCCCCC------CCHHHHHHHHHcCCCeEEeeeecCCCCCCCCCCcEEecccchhccCCCC
Confidence 3689999999999999999972111 2457888899999887753 22110
Q ss_pred --CH----HHHHhh----CCCceEEEEeecCCHHHHHHHHHHHHHcCCc-EEEEecCCCCCCchhHHhhhhcCCCCcccc
Q 017718 113 --SV----EEVAST----GPGIRFFQLYVYKDRNVVAQLVRRAERAGFK-AIALTVDTPRLGRREADIKNRFTLPPFLTL 181 (367)
Q Consensus 113 --~~----e~i~~~----~~~~~~~QLy~~~d~~~~~~~l~ra~~~G~~-ai~itvd~p~~g~r~~~~~~~~~~p~~~~~ 181 (367)
.. +++.+. ...|..+||. ..+.+...+.+++++++|++ +|.||+.||.. | +.
T Consensus 109 n~G~~~~~~~l~~~~~~~~~~pvivsI~-g~~~~d~~~~a~~l~~~g~~d~ielNisCPn~-------------~-G~-- 171 (345)
T 3oix_A 109 NLGINYYLDYVTELQKQPDSKNHFLSLV-GMSPEETHTILXMVEASKYQGLVELNLSCPNV-------------P-GX-- 171 (345)
T ss_dssp BSCHHHHHHHHHHHHHSTTCCCCEEEEC-CSSHHHHHHHHHHHHHSSCCSEEEEECSCCCS-------------T-TC--
T ss_pred ChhHHHHHHHHHHHhhccCCCCEEEEec-CCCHHHHHHHHHHHhccCCCcEEEEecCCCCc-------------C-Cc--
Confidence 12 223321 2267899997 67888888999999999988 99999999973 1 00
Q ss_pred ccccccccCccccccchhhHHHhhhccCccc--c-HHHHHhhcCCCEEEEecCC---HHHHHHHHHcCCcEEEEcCC---
Q 017718 182 KNFQGLDLGKMDEANDSGLAAYVAGQIDRSL--S-WKWLQTITKLPILVKGVLT---AEDARIAVQAGAAGIIVSNH--- 252 (367)
Q Consensus 182 ~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~--~-~~~l~~~~~~Pv~vK~v~~---~~~a~~~~~~G~d~i~vs~~--- 252 (367)
.. ++. +++. . .+++++.+++||++|+..+ .+.++.+.++|+++|++.|.
T Consensus 172 ~~--------------------l~~--~~e~l~~il~av~~~~~~PV~vKi~p~~~~~~~a~~~~~aga~~i~~int~nt 229 (345)
T 3oix_A 172 PQ--------------------IAY--DFETTDQILSEVFTYFTKPLGIKLPPYFDIVHFDQAAAIFNXYPLTFVNCINS 229 (345)
T ss_dssp CC--------------------GGG--CHHHHHHHHHHHTTTCCSCEEEEECCCCCHHHHHHHHHHHTTSCCSEEEECCC
T ss_pred hh--------------------hcC--CHHHHHHHHHHHHHHhCCCeEEEECCCCCHHHHHHHHHHhCCCceEEEEeecc
Confidence 00 000 2211 2 2378888899999999853 35578888888877654321
Q ss_pred --------CCC-CC--------CCccc----hHHHHHHHHHHhcCCCcEEEecCCCCHHHHHHHHHcCCCEEEechHHHH
Q 017718 253 --------GAR-QL--------DYVPA----TIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFIGRPVVY 311 (367)
Q Consensus 253 --------gg~-~~--------~~~~~----~~~~l~~i~~~~~~~~~via~GGI~~~~dv~kal~lGAd~V~ig~~~l~ 311 (367)
..+ .+ .+|++ +++.++++++.+++++|||++|||++++|+.+++++|||+||+||+|++
T Consensus 230 ~g~~~~i~~~~~~~~~~~~~gGlSG~ai~p~a~~~v~~i~~~~~~~ipIIg~GGI~s~~da~~~l~aGAd~V~igra~~~ 309 (345)
T 3oix_A 230 IGNGLVIEDETVVIXPKNGFGGIGGDYVKPTALANVHAFYKRLNPSIQIIGTGGVXTGRDAFEHILCGASMVQIGTALHQ 309 (345)
T ss_dssp EEEEECEETTEESCSGGGGEEEEEEGGGHHHHHHHHHHHHTTSCTTSEEEEESSCCSHHHHHHHHHHTCSEEEESHHHHH
T ss_pred cccceeeccCccccccccccCCcCCccccHHHHHHHHHHHHHcCCCCcEEEECCCCChHHHHHHHHhCCCEEEEChHHHh
Confidence 111 11 12233 3678888888776689999999999999999999999999999999877
Q ss_pred HhhccChHHHHHHHHHHHHHHHHHHHHhCCCChhhhccc
Q 017718 312 SLAAEGEKGVRRVLEMLREEFELAMALSGCRSLKEITRD 350 (367)
Q Consensus 312 ~l~~~G~~~v~~~i~~l~~el~~~m~~~G~~si~~l~~~ 350 (367)
. |+. +++.++++|+.+|...|+++++|+++.
T Consensus 310 ~----gP~----~~~~i~~~L~~~l~~~G~~si~e~~G~ 340 (345)
T 3oix_A 310 E----GPQ----IFKRITKELXAIMTEKGYETLEDFRGK 340 (345)
T ss_dssp H----CTH----HHHHHHHHHHHHHHHHTCCSGGGTTTC
T ss_pred c----ChH----HHHHHHHHHHHHHHHcCCCCHHHHHhH
Confidence 3 664 778899999999999999999999875
|
| >3i65_A Dihydroorotate dehydrogenase homolog, mitochondrial; triazolopyrimidine,inhibitor, DSM1, FAD, flavoprotein, membrane, mitochondrion; HET: JZ8 FMN ORO LDA; 2.00A {Plasmodium falciparum 3D7} PDB: 3i68_A* 3i6r_A* 3o8a_A* 3sfk_A* | Back alignment and structure |
|---|
Probab=99.89 E-value=6.2e-22 Score=195.72 Aligned_cols=122 Identities=25% Similarity=0.318 Sum_probs=103.8
Q ss_pred CCC-EEEEecCCH------HHHHHHHHcCCcEEEEcCCCCCCCC--------C---cc----chHHHHHHHHHHhcCCCc
Q 017718 222 KLP-ILVKGVLTA------EDARIAVQAGAAGIIVSNHGARQLD--------Y---VP----ATIMALEEVVKATQGRIP 279 (367)
Q Consensus 222 ~~P-v~vK~v~~~------~~a~~~~~~G~d~i~vs~~gg~~~~--------~---~~----~~~~~l~~i~~~~~~~~~ 279 (367)
++| |+||+..+. +.|+.+.++|+|+|+++|+...+.+ + |+ .+++.++++++.+++++|
T Consensus 268 ~~P~V~VKi~pd~~~~~i~~iA~~a~~aGaDgIiv~Ntt~~r~dl~~~~~~~GGlSG~a~~p~al~~I~~v~~~v~~~iP 347 (415)
T 3i65_A 268 KKPLVFVKLAPDLNQEQKKEIADVLLETNIDGMIISNTTTQINDIKSFENKKGGVSGAKLKDISTKFICEMYNYTNKQIP 347 (415)
T ss_dssp SCCEEEEEECSCCCHHHHHHHHHHHHHHTCSEEEECCCBSCCCCCGGGTTCCSEEEEGGGHHHHHHHHHHHHHHTTTCSC
T ss_pred CCCeEEEEecCCCCHHHHHHHHHHHHHcCCcEEEEeCCCcccccccccccccCCcCCccchHHHHHHHHHHHHHhCCCCC
Confidence 689 999998542 3488999999999999998764332 2 22 355789999988877899
Q ss_pred EEEecCCCCHHHHHHHHHcCCCEEEechHHHHHhhccChHHHHHHHHHHHHHHHHHHHHhCCCChhhhcccc
Q 017718 280 VFLDGGVRRGTDVFKALALGASGIFIGRPVVYSLAAEGEKGVRRVLEMLREEFELAMALSGCRSLKEITRDH 351 (367)
Q Consensus 280 via~GGI~~~~dv~kal~lGAd~V~ig~~~l~~l~~~G~~~v~~~i~~l~~el~~~m~~~G~~si~~l~~~~ 351 (367)
||++|||+|++|+.+++++|||+|+|||++++. |+. +++.++++|+.+|...|+++++|+++..
T Consensus 348 IIg~GGI~s~eDa~e~l~aGAd~VqIgra~l~~----GP~----~~~~i~~~L~~~l~~~G~~si~e~~G~~ 411 (415)
T 3i65_A 348 IIASGGIFSGLDALEKIEAGASVCQLYSCLVFN----GMK----SAVQIKRELNHLLYQRGYYNLKEAIGRK 411 (415)
T ss_dssp EEECSSCCSHHHHHHHHHHTEEEEEESHHHHHH----GGG----HHHHHHHHHHHHHHHTTCSSSTTTTTTT
T ss_pred EEEECCCCCHHHHHHHHHcCCCEEEEcHHHHhc----CHH----HHHHHHHHHHHHHHHcCCCCHHHHhChh
Confidence 999999999999999999999999999999984 664 6778999999999999999999999764
|
| >3zwt_A Dihydroorotate dehydrogenase (quinone), mitochond; oxidoreductase; HET: FMN ORO KFZ; 1.55A {Homo sapiens} PDB: 1d3h_A* 2bxv_A* 2prh_A* 2prl_A* 2prm_A* 3f1q_A* 3fj6_A* 3fjl_A* 3g0u_A* 3g0x_A* 3zws_A* 1d3g_A* 3u2o_A* 2fpv_A* 2fpt_A* 2fpy_A* 2fqi_A* 3kvl_A* 3kvk_A* 3kvj_A* ... | Back alignment and structure |
|---|
Probab=99.89 E-value=1.9e-21 Score=190.62 Aligned_cols=244 Identities=21% Similarity=0.247 Sum_probs=165.1
Q ss_pred CCCCccceeEcCeeeccceEeCcccchhccCChhhHHHHHHHHHcCCceee-cCCCC-----------------------
Q 017718 56 VSKIDMNTTVLGFKISMPIMIAPTAMQKMAHPEGEYATARAASAAGTIMTL-SSWST----------------------- 111 (367)
Q Consensus 56 ~~~vd~st~i~g~~l~~Pi~iAPm~~~~l~~~~~e~~~a~aa~~~G~~~~v-s~~~~----------------------- 111 (367)
.++.+++++++|.++++||++|+ |.. .+++ ..+...++|..+++ +|.+.
T Consensus 45 ~~~~~L~~~~~Gl~~~NPvglAa-G~~----~~~~--~~~~~~~~g~G~v~~ktvt~~pq~GNp~PR~~~~~~~~~~iN~ 117 (367)
T 3zwt_A 45 QDSDMLEVRVLGHKFRNPVGIAA-GFD----KHGE--AVDGLYKMGFGFVEIGSVTPKPQEGNPRPRVFRLPEDQAVINR 117 (367)
T ss_dssp CCCGGGCEEETTEEESSSEEECT-TSS----TTSS--SHHHHHHTTCSEEEEEEECSSCBCCSCSCCEEEEGGGTEEEEC
T ss_pred CCCCCCcEEECCEEcCCCCEeCC-CcC----CCHH--HHHHHHhcCcCeEEeCCccCCCCCCCCCCeEEEecCccceeec
Confidence 56789999999999999999996 222 2222 23444456777664 32211
Q ss_pred -----CCH----HHHHhh---------CCCceEEEEeecC----CHHHHHHHHHHHHHcCCcEEEEecCCCCCCchhHHh
Q 017718 112 -----SSV----EEVAST---------GPGIRFFQLYVYK----DRNVVAQLVRRAERAGFKAIALTVDTPRLGRREADI 169 (367)
Q Consensus 112 -----~~~----e~i~~~---------~~~~~~~QLy~~~----d~~~~~~~l~ra~~~G~~ai~itvd~p~~g~r~~~~ 169 (367)
... +++.+. ...|..+||..++ +.+...+.++++.+ +++++.||+.||...
T Consensus 118 ~G~~N~G~~~~~~~l~~~~~~~~~~~~~~~pv~vniggn~~t~~~~~dy~~~~~~~~~-~ad~ielNisCPn~~------ 190 (367)
T 3zwt_A 118 YGFNSHGLSVVEHRLRARQQKQAKLTEDGLPLGVNLGKNKTSVDAAEDYAEGVRVLGP-LADYLVVNVSSPNTA------ 190 (367)
T ss_dssp CCCCBCCHHHHHHHHHTTHHHHHHHHHTTCCEEEEECCCTTCSCHHHHHHHHHHHHGG-GCSEEEEECCCTTST------
T ss_pred cCCCCccHHHHHHHHHHHhhhccccccCCceEEEEEecCCCCCcCHHHHHHHHHHHhh-hCCEEEEECCCCCCC------
Confidence 011 222220 1247889996432 23444444444433 589999999999731
Q ss_pred hhhcCCCCccccccccccccCccccccchhhHHHhhhccCccccHHHHHh-------hcCCCEEEEecCCH------HHH
Q 017718 170 KNRFTLPPFLTLKNFQGLDLGKMDEANDSGLAAYVAGQIDRSLSWKWLQT-------ITKLPILVKGVLTA------EDA 236 (367)
Q Consensus 170 ~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~l~~-------~~~~Pv~vK~v~~~------~~a 236 (367)
+. +.+.. ...+.+. .+.+++ .+++||+||+..+. +.|
T Consensus 191 --------G~--~~l~~----------~~~l~~l----------l~av~~~~~~~~~~~~~Pv~vKi~p~~~~~~~~~ia 240 (367)
T 3zwt_A 191 --------GL--RSLQG----------KAELRRL----------LTKVLQERDGLRRVHRPAVLVKIAPDLTSQDKEDIA 240 (367)
T ss_dssp --------TG--GGGGS----------HHHHHHH----------HHHHHHHHHTSCGGGCCEEEEEECSCCCHHHHHHHH
T ss_pred --------Cc--cccCC----------HHHHHHH----------HHHHHHHHhhccccCCceEEEEeCCCCCHHHHHHHH
Confidence 00 00000 0000000 113332 26899999998542 348
Q ss_pred HHHHHcCCcEEEEcCCC-CCC---------CCCc---cc----hHHHHHHHHHHhcCCCcEEEecCCCCHHHHHHHHHcC
Q 017718 237 RIAVQAGAAGIIVSNHG-ARQ---------LDYV---PA----TIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALG 299 (367)
Q Consensus 237 ~~~~~~G~d~i~vs~~g-g~~---------~~~~---~~----~~~~l~~i~~~~~~~~~via~GGI~~~~dv~kal~lG 299 (367)
+.+.++|+|+|+++|+. ++. ..+| ++ +++.++++++.+++++|||++|||+|++|+.+++.+|
T Consensus 241 ~~~~~aGadgi~v~ntt~~r~~~~~~~~~~~~gGlSG~~i~p~a~~~v~~i~~~v~~~ipvI~~GGI~s~~da~~~l~~G 320 (367)
T 3zwt_A 241 SVVKELGIDGLIVTNTTVSRPAGLQGALRSETGGLSGKPLRDLSTQTIREMYALTQGRVPIIGVGGVSSGQDALEKIRAG 320 (367)
T ss_dssp HHHHHHTCCEEEECCCBSCCCTTCCCTTTTSSSEEEEGGGHHHHHHHHHHHHHHTTTCSCEEEESSCCSHHHHHHHHHHT
T ss_pred HHHHHcCCCEEEEeCCCcccccccccccccccCCcCCcccchhHHHHHHHHHHHcCCCceEEEECCCCCHHHHHHHHHcC
Confidence 88999999999999875 221 1122 22 4678999999887789999999999999999999999
Q ss_pred CCEEEechHHHHHhhccChHHHHHHHHHHHHHHHHHHHHhCCCChhhhcccc
Q 017718 300 ASGIFIGRPVVYSLAAEGEKGVRRVLEMLREEFELAMALSGCRSLKEITRDH 351 (367)
Q Consensus 300 Ad~V~ig~~~l~~l~~~G~~~v~~~i~~l~~el~~~m~~~G~~si~~l~~~~ 351 (367)
||+||+||++++. |+. +++.+.++|+.+|...|+++++|+++..
T Consensus 321 Ad~V~vgra~l~~----gP~----~~~~i~~~l~~~m~~~G~~~i~e~~G~~ 364 (367)
T 3zwt_A 321 ASLVQLYTALTFW----GPP----VVGKVKRELEALLKEQGFGGVTDAIGAD 364 (367)
T ss_dssp CSEEEESHHHHHH----CTH----HHHHHHHHHHHHHHHTTCSSHHHHTTGG
T ss_pred CCEEEECHHHHhc----CcH----HHHHHHHHHHHHHHHcCCCCHHHhhCcc
Confidence 9999999999873 664 6788999999999999999999998754
|
| >1f76_A Dihydroorotate dehydrogenase; monomer, alpha-beta-barrel, FMN binding domain, orotate complex, oxidoreductase; HET: MSE FMN ORO; 2.50A {Bacteria} SCOP: c.1.4.1 | Back alignment and structure |
|---|
Probab=99.88 E-value=4.4e-21 Score=186.15 Aligned_cols=207 Identities=17% Similarity=0.164 Sum_probs=135.9
Q ss_pred CCccceeEcCeeeccceEeCcccchhccCChhhHHHHHHHHHcCCceeecC-CCCCC-----------------------
Q 017718 58 KIDMNTTVLGFKISMPIMIAPTAMQKMAHPEGEYATARAASAAGTIMTLSS-WSTSS----------------------- 113 (367)
Q Consensus 58 ~vd~st~i~g~~l~~Pi~iAPm~~~~l~~~~~e~~~a~aa~~~G~~~~vs~-~~~~~----------------------- 113 (367)
.+|++++++|+++++||++|++ . +.+++ +++++.+.|++++++. .+..+
T Consensus 42 ~~~l~~~i~g~~l~npi~~aag-~----~~~~~--~~~~~a~~G~g~i~~~~~~~~~~~g~~~pr~~~~~~d~~~in~~g 114 (336)
T 1f76_A 42 VPAKPVNCMGLTFKNPLGLAAG-L----DKDGE--CIDALGAMGFGSIEIGTVTPRPQPGNDKPRLFRLVDAEGLINRMG 114 (336)
T ss_dssp CCCCCEEETTEEESSSEEECTT-S----STTCC--CHHHHHHTTCSEEEEEEECSSCBCCSCSCCEEEETTTTEEEECCC
T ss_pred CCCCCeEECCEEcCCCcEeCcc-c----CCcHH--HHHHHHHcCccEEEeCCCCCCCCCCCCCcceeeccccceeeecCC
Confidence 4899999999999999999963 2 33333 8888999999987532 22111
Q ss_pred -----HHH----HHhhC-CCceEEEEeecCC------HHHHHHHHHHHHHcCCcEEEEecCCCCCCchhHHhhhhcCCCC
Q 017718 114 -----VEE----VASTG-PGIRFFQLYVYKD------RNVVAQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFTLPP 177 (367)
Q Consensus 114 -----~e~----i~~~~-~~~~~~QLy~~~d------~~~~~~~l~ra~~~G~~ai~itvd~p~~g~r~~~~~~~~~~p~ 177 (367)
.++ +.+.. ..+..+|+....+ .+...+.++++++ |++++.+|+.||...
T Consensus 115 ~~~~g~~~~~~~~~~~~~~~~~~v~i~~~~~~~i~~~~~~~~~aa~~~~~-g~d~iein~~sP~~~-------------- 179 (336)
T 1f76_A 115 FNNLGVDNLVENVKKAHYDGVLGINIGKNKDTPVEQGKDDYLICMEKIYA-YAGYIAINISSPNTP-------------- 179 (336)
T ss_dssp CCBCCHHHHHHHHHHCCCCSEEEEEECCCTTSCGGGTHHHHHHHHHHHGG-GCSEEEEECCCSSST--------------
T ss_pred CCCcCHHHHHHHHHhcccCCcEEEEecCCCCCcccccHHHHHHHHHHHhc-cCCEEEEEccCCCCC--------------
Confidence 111 11111 1244555542211 3333344444433 566666666555420
Q ss_pred ccccccccccccCccccccchhhHHHhhhccCccccHH---HHHhhc---------CCCEEEEecCC------HHHHHHH
Q 017718 178 FLTLKNFQGLDLGKMDEANDSGLAAYVAGQIDRSLSWK---WLQTIT---------KLPILVKGVLT------AEDARIA 239 (367)
Q Consensus 178 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~---~l~~~~---------~~Pv~vK~v~~------~~~a~~~ 239 (367)
+ .+.. .++.+.|+ ++|+.+ ++||++|...+ .+.|+.+
T Consensus 180 -------------------g---~~~~---~~~~~~~~il~~vr~~~~~~~~~~g~~~Pv~vKi~~~~~~~~~~~~a~~l 234 (336)
T 1f76_A 180 -------------------G---LRTL---QYGEALDDLLTAIKNKQNDLQAMHHKYVPIAVKIAPDLSEEELIQVADSL 234 (336)
T ss_dssp -------------------T---GGGG---GSHHHHHHHHHHHHHHHHHHHHHHTSCCCEEEECCSCCCHHHHHHHHHHH
T ss_pred -------------------C---cccc---cCHHHHHHHHHHHHHHHHhhhhcccccCceEEEecCCCCHHHHHHHHHHH
Confidence 0 0000 02333343 788777 89999998853 2348999
Q ss_pred HHcCCcEEEEcCCC-CCC---------CCC---cc----chHHHHHHHHHHhcCCCcEEEecCCCCHHHHHHHHHcCCCE
Q 017718 240 VQAGAAGIIVSNHG-ARQ---------LDY---VP----ATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASG 302 (367)
Q Consensus 240 ~~~G~d~i~vs~~g-g~~---------~~~---~~----~~~~~l~~i~~~~~~~~~via~GGI~~~~dv~kal~lGAd~ 302 (367)
.++|+|+|+++|++ +++ ..+ |+ ..++.++++++.+++++|||++|||++++|+.++|++|||+
T Consensus 235 ~~~Gvd~i~vsn~~~~~~~~~~~~~~~~~gg~~g~~~~~~~~~~i~~i~~~~~~~ipVi~~GGI~~~~da~~~l~~GAd~ 314 (336)
T 1f76_A 235 VRHNIDGVIATNTTLDRSLVQGMKNCDQTGGLSGRPLQLKSTEIIRRLSLELNGRLPIIGVGGIDSVIAAREKIAAGASL 314 (336)
T ss_dssp HHTTCSEEEECCCBCCCTTSTTSTTTTCSSEEEEGGGHHHHHHHHHHHHHHHTTSSCEEEESSCCSHHHHHHHHHHTCSE
T ss_pred HHcCCcEEEEeCCcccccccccccccccCCCcCCchhHHHHHHHHHHHHHHhCCCCCEEEECCCCCHHHHHHHHHCCCCE
Confidence 99999999999874 222 011 22 24577888888886689999999999999999999999999
Q ss_pred EEechHHHH
Q 017718 303 IFIGRPVVY 311 (367)
Q Consensus 303 V~ig~~~l~ 311 (367)
|++||++++
T Consensus 315 V~igr~~l~ 323 (336)
T 1f76_A 315 VQIYSGFIF 323 (336)
T ss_dssp EEESHHHHH
T ss_pred EEeeHHHHh
Confidence 999999997
|
| >1tv5_A Dhodehase, dihydroorotate dehydrogenase homolog, mitochondri, dihydroorotate; alpha-beta barrel, TIM barrel, oxidoreductase; HET: A26 FMN ORO N8E; 2.40A {Plasmodium falciparum} SCOP: c.1.4.1 | Back alignment and structure |
|---|
Probab=99.87 E-value=7.3e-21 Score=190.24 Aligned_cols=123 Identities=24% Similarity=0.331 Sum_probs=103.0
Q ss_pred cCCC-EEEEecCC--HHH----HHHHHHcCCcEEEEcCCCCCCCC--------Cc---c----chHHHHHHHHHHhcCCC
Q 017718 221 TKLP-ILVKGVLT--AED----ARIAVQAGAAGIIVSNHGARQLD--------YV---P----ATIMALEEVVKATQGRI 278 (367)
Q Consensus 221 ~~~P-v~vK~v~~--~~~----a~~~~~~G~d~i~vs~~gg~~~~--------~~---~----~~~~~l~~i~~~~~~~~ 278 (367)
.++| |++|+..+ .++ |+.+.++|+|+|+++|+...+.+ +| + .+++.++++++.+++++
T Consensus 295 ~~~P~V~vKispd~~~ed~~~iA~~~~~aGaDgI~v~ntt~~~~d~~~~~~~~GGlSG~~~~~~sl~~i~~v~~~v~~~i 374 (443)
T 1tv5_A 295 KKKPLVFVKLAPDLNQEQKKEIADVLLETNIDGMIISNTTTQINDIKSFENKKGGVSGAKLKDISTKFICEMYNYTNKQI 374 (443)
T ss_dssp SSCCEEEEEECSCCCHHHHHHHHHHHHHTTCSEEEECCCBSCCCCCGGGTTCCSEEEEHHHHHHHHHHHHHHHHHTTTCS
T ss_pred CCCCeEEEEeCCCCCHHHHHHHHHHHHHcCCCEEEEECCCcccccccccccccCCcCCCcchHHHHHHHHHHHHHcCCCC
Confidence 4689 99999854 333 88999999999999997654322 22 2 14678899988887789
Q ss_pred cEEEecCCCCHHHHHHHHHcCCCEEEechHHHHHhhccChHHHHHHHHHHHHHHHHHHHHhCCCChhhhcccc
Q 017718 279 PVFLDGGVRRGTDVFKALALGASGIFIGRPVVYSLAAEGEKGVRRVLEMLREEFELAMALSGCRSLKEITRDH 351 (367)
Q Consensus 279 ~via~GGI~~~~dv~kal~lGAd~V~ig~~~l~~l~~~G~~~v~~~i~~l~~el~~~m~~~G~~si~~l~~~~ 351 (367)
|||++|||++++|+.++|++|||+||+||++++. |+. +++.+++++..+|...|+++++|+++..
T Consensus 375 PVIg~GGI~s~~DA~e~l~aGAd~Vqigrall~~----gP~----l~~~i~~~l~~~l~~~G~~si~e~~G~~ 439 (443)
T 1tv5_A 375 PIIASGGIFSGLDALEKIEAGASVCQLYSCLVFN----GMK----SAVQIKRELNHLLYQRGYYNLKEAIGRK 439 (443)
T ss_dssp CEEEESSCCSHHHHHHHHHTTEEEEEESHHHHHH----GGG----HHHHHHHHHHHHHHHHTCSSSGGGTTTT
T ss_pred cEEEECCCCCHHHHHHHHHcCCCEEEEcHHHHhc----ChH----HHHHHHHHHHHHHHHhCCCCHHHHhhhh
Confidence 9999999999999999999999999999999983 553 7788899999999999999999999875
|
| >1me8_A Inosine-5'-monophosphate dehydrogenase; alpha beta barrel, oxidoreductase; HET: RVP; 1.90A {Tritrichomonas foetus} SCOP: c.1.5.1 PDB: 1ak5_A* 1me7_A* 1me9_A* 1meh_A* 1mei_A* 1mew_A* 1pvn_A* 1lrt_A* | Back alignment and structure |
|---|
Probab=99.86 E-value=1.4e-20 Score=192.07 Aligned_cols=151 Identities=20% Similarity=0.258 Sum_probs=119.7
Q ss_pred HHHhhc-C-CCEEEEecCCHHHHHHHHHcCCcEEEEcCCCCC-----C-CCCccchHHHHHHHHHHhcC-------CCcE
Q 017718 216 WLQTIT-K-LPILVKGVLTAEDARIAVQAGAAGIIVSNHGAR-----Q-LDYVPATIMALEEVVKATQG-------RIPV 280 (367)
Q Consensus 216 ~l~~~~-~-~Pv~vK~v~~~~~a~~~~~~G~d~i~vs~~gg~-----~-~~~~~~~~~~l~~i~~~~~~-------~~~v 280 (367)
++++.+ + +||+++.+.+.++++.+.++|+|+|+++.+||. . .+++.+++.+|.++.+.++. ++||
T Consensus 276 ~lk~~~~~~~~Vi~G~V~t~~~a~~l~~aGad~I~Vg~~~g~~~~~r~~~~~g~p~~~~l~~v~~~~~~~~~~~~~~ipv 355 (503)
T 1me8_A 276 WIREKYGDKVKVGAGNIVDGEGFRYLADAGADFIKIGIGGGSICITREQKGIGRGQATAVIDVVAERNKYFEETGIYIPV 355 (503)
T ss_dssp HHHHHHGGGSCEEEEEECSHHHHHHHHHHTCSEEEECSSCSTTCCSTTTTCCCCCHHHHHHHHHHHHHHHHHHHSEECCE
T ss_pred HHHHhCCCCceEeeccccCHHHHHHHHHhCCCeEEecccCCcCcccccccCCCCchHHHHHHHHHHHHHHhhhcCCCceE
Confidence 788876 4 899999999999999999999999999655542 2 23578899999999876532 5999
Q ss_pred EEecCCCCHHHHHHHHHcCCCEEEechHHH--------------------HHhhccCh----------------------
Q 017718 281 FLDGGVRRGTDVFKALALGASGIFIGRPVV--------------------YSLAAEGE---------------------- 318 (367)
Q Consensus 281 ia~GGI~~~~dv~kal~lGAd~V~ig~~~l--------------------~~l~~~G~---------------------- 318 (367)
|++|||+++.|++|||++|||+|++|++|+ |++++.|.
T Consensus 356 ia~GGi~~~~di~kAlalGA~~V~iG~~~~~~~E~~~~~~~~~g~~~k~~~g~~s~~~~~~~~~~~~~~~~~~~~eg~~~ 435 (503)
T 1me8_A 356 CSDGGIVYDYHMTLALAMGADFIMLGRYFARFEESPTRKVTINGSVMKEYWGEGSSRARNWQRYDLGGKQKLSFEEGVDS 435 (503)
T ss_dssp EEESCCCSHHHHHHHHHTTCSEEEESHHHHTBTTSSSCEEEETTEEEEEEECTTSHHHHCC--------------CCCEE
T ss_pred EEeCCCCCHHHHHHHHHcCCCEEEECchhhccccCCCceEEECCeEEEeecCccchhHhhccccccccccceecccceeE
Confidence 999999999999999999999999999996 23222111
Q ss_pred -----HHHHHHHHHHHHHHHHHHHHhCCCChhhhcc-cceeeccCCCCCCCCCC
Q 017718 319 -----KGVRRVLEMLREEFELAMALSGCRSLKEITR-DHIVTEWDASLPRPVPR 366 (367)
Q Consensus 319 -----~~v~~~i~~l~~el~~~m~~~G~~si~~l~~-~~l~~~~~~~~~~~~~~ 366 (367)
.++.++++.|..||+..|.++|+++++||++ ..+......+....-||
T Consensus 436 ~~~~~~~v~~~~~~~~~~l~~~m~~~G~~~i~~l~~~~~~~~~~~~~~~e~~~~ 489 (503)
T 1me8_A 436 YVPYAGKLKDNVEASLNKVKSTMCNCGALTIPQLQSKAKITLVSSVSIVEGGAH 489 (503)
T ss_dssp EEECCBCHHHHHHHHHHHHHHHHHHTTCSBHHHHHHHCCEEECCTTCSTTTSCC
T ss_pred ecCCCCcHHHHHHHHHHHHHHHHHhcCcchHHHHHhCCCEEEEcccccccCCCc
Confidence 2578999999999999999999999999986 44444333343333333
|
| >4af0_A Inosine-5'-monophosphate dehydrogenase; oxidoreductase, GTP biosynthesis, drug resistance; HET: MOA IMP; 2.20A {Cryptococcus neoformans} PDB: 4af0_B* | Back alignment and structure |
|---|
Probab=99.85 E-value=8.4e-20 Score=183.50 Aligned_cols=136 Identities=23% Similarity=0.369 Sum_probs=111.4
Q ss_pred HHHHhhc-CCCEEEEecCCHHHHHHHHHcCCcEEEEcCCCCC------CCCCccchHHHHHHHHHHhcC-CCcEEEecCC
Q 017718 215 KWLQTIT-KLPILVKGVLTAEDARIAVQAGAAGIIVSNHGAR------QLDYVPATIMALEEVVKATQG-RIPVFLDGGV 286 (367)
Q Consensus 215 ~~l~~~~-~~Pv~vK~v~~~~~a~~~~~~G~d~i~vs~~gg~------~~~~~~~~~~~l~~i~~~~~~-~~~via~GGI 286 (367)
+++|+.+ ++||++..+.+.+.++.++++|||+|.|.-.+|. ....|.|.+.++.++.++.+. .+|||+||||
T Consensus 314 ~~ik~~~p~~~viaGNVaT~e~a~~Li~aGAD~vkVGiGpGSiCtTr~v~GvG~PQ~tAi~~~a~~a~~~~vpvIADGGI 393 (556)
T 4af0_A 314 KWIKQTYPKIDVIAGNVVTREQAAQLIAAGADGLRIGMGSGSICITQEVMAVGRPQGTAVYAVAEFASRFGIPCIADGGI 393 (556)
T ss_dssp HHHHHHCTTSEEEEEEECSHHHHHHHHHHTCSEEEECSSCSTTBCCTTTCCSCCCHHHHHHHHHHHHGGGTCCEEEESCC
T ss_pred HHHHhhCCcceEEeccccCHHHHHHHHHcCCCEEeecCCCCcccccccccCCCCcHHHHHHHHHHHHHHcCCCEEecCCc
Confidence 3888877 6899999999999999999999999999654442 123467888999999877643 6999999999
Q ss_pred CCHHHHHHHHHcCCCEEEechHHH--------------------HHhhc-------------------------------
Q 017718 287 RRGTDVFKALALGASGIFIGRPVV--------------------YSLAA------------------------------- 315 (367)
Q Consensus 287 ~~~~dv~kal~lGAd~V~ig~~~l--------------------~~l~~------------------------------- 315 (367)
+++.|++|||++|||+||+|+.|- ++++.
T Consensus 394 ~~sGDi~KAlaaGAd~VMlGsllAGt~EsPGe~~~~~G~~~K~YrGMgS~~Am~~~~~~~~~~~~~~~~~~~~s~dRyfq 473 (556)
T 4af0_A 394 GNIGHIAKALALGASAVMMGGLLAGTTESPGEYFYHEGKRVKVYRGMGSIEAMEHTQRGSASGKRSILGLDNAATARYFS 473 (556)
T ss_dssp CSHHHHHHHHHTTCSEEEESTTTTTBTTSSSCCEEETTEEEEEEECTTSHHHHTTC------------CCSCSSEEECCC
T ss_pred CcchHHHHHhhcCCCEEEEchhhccccCCCCcEEEECCEEEEeecccccHHHHHhcccCCcccccccccccccchhhhcc
Confidence 999999999999999999999772 11110
Q ss_pred --------cCh-------HHHHHHHHHHHHHHHHHHHHhCCCChhhhccc
Q 017718 316 --------EGE-------KGVRRVLEMLREEFELAMALSGCRSLKEITRD 350 (367)
Q Consensus 316 --------~G~-------~~v~~~i~~l~~el~~~m~~~G~~si~~l~~~ 350 (367)
+|. ..+.+++..|...|+..|.++|+++|.||+..
T Consensus 474 ~~~~~~v~EGveg~VpykG~v~~~i~~l~gGlrs~m~y~Ga~~i~el~~~ 523 (556)
T 4af0_A 474 EADAVKVAQGVSGDVADKGSINKFVPYLFTGLQHSLQDAAIKSVSELHSC 523 (556)
T ss_dssp BSSSSCBCCBCEEEEECCBCHHHHHHHHHHHHHHHHHHTTCSSHHHHHHH
T ss_pred cccccccCCccEEeccCCCcHHHHHHHHHHHHHHhhhccCCCcHHHHHHh
Confidence 010 02789999999999999999999999999864
|
| >3tjx_A Dihydroorotate dehydrogenase; PYRD, dhodh, lmdhodh, oxidored mutation H174A; HET: FMN; 1.64A {Leishmania major} PDB: 3gz3_A* 3gye_A* 3tro_A* | Back alignment and structure |
|---|
Probab=99.84 E-value=1e-19 Score=177.82 Aligned_cols=243 Identities=17% Similarity=0.118 Sum_probs=155.5
Q ss_pred CCCCCccceeEcCeeeccceEeCcccchhccCChhhHHHHHHHHHcCCceee-cCCCCC---------------------
Q 017718 55 DVSKIDMNTTVLGFKISMPIMIAPTAMQKMAHPEGEYATARAASAAGTIMTL-SSWSTS--------------------- 112 (367)
Q Consensus 55 ~~~~vd~st~i~g~~l~~Pi~iAPm~~~~l~~~~~e~~~a~aa~~~G~~~~v-s~~~~~--------------------- 112 (367)
+-.+.+++|+++|++|++||++|+-.+. .+....+++.+.|..+++ +|.+..
T Consensus 31 g~~~~~L~v~~~Gl~f~NPvglAaG~~~------~~~e~~~~l~~~G~G~v~~~tvt~~pq~GNp~PR~~~l~~~~iN~~ 104 (354)
T 3tjx_A 31 GRGSMSLQVNLLNNTFANPFMNAAGVMC------TTTEELVAMTESASGSLVSKSCTPALREGNPTPRYQALPLGSINSM 104 (354)
T ss_dssp --CCCCCCEEETTEEESSSEEECTTSSC------SSHHHHHHHHHSSCSCEEEEEECSSCBCCSCSCCEEEETTEEEECC
T ss_pred CCCCCceeEEECCEEcCCCcEEccCCCC------CCHHHHHHHHHcCCCEEEeCCcCcccccCCCCCeEEEccccccccc
Confidence 3457899999999999999999972222 256788888888888664 332111
Q ss_pred -----CHH----HHHhhC---CCceEEEEeecCCHHHHHHHHHHHHH---cCCcEEEEecCCCCCCchhHHhhhhcCCCC
Q 017718 113 -----SVE----EVASTG---PGIRFFQLYVYKDRNVVAQLVRRAER---AGFKAIALTVDTPRLGRREADIKNRFTLPP 177 (367)
Q Consensus 113 -----~~e----~i~~~~---~~~~~~QLy~~~d~~~~~~~l~ra~~---~G~~ai~itvd~p~~g~r~~~~~~~~~~p~ 177 (367)
..+ ++.+.. ..+..+++. ..+.+...+..+++.+ .+++++.+|+.||.. |.
T Consensus 105 G~~n~G~~~~~~~~~~~~~~~~~pvivsi~-g~~~~~~~~~~~~~~~~~~~~ad~ielNiScPn~-------------~g 170 (354)
T 3tjx_A 105 GLPNNGFDFYLAYAAEQHDYGKKPLFLSMS-GLSMRENVEMCKRLAAVATEKGVILELNLSCPNV-------------PG 170 (354)
T ss_dssp CCCBCCHHHHHHHHHHTCCTTTCCEEEEEC-CSSHHHHHHHHHHHHHHHHHHCCEEEEECC-------------------
T ss_pred ccCCHHHHHHHHHHHHhhccCCceEEEEEe-cCChHHHHHHHHHHHHhhhcCCCEEEeeeCCCCC-------------cc
Confidence 122 222221 146677776 4455555555555443 478889999999862 10
Q ss_pred ccccccccccccCccccccchhhHHHhhhccCccc--cH-HHHHhhcCCCEEEEecCCH------HHHHHHHHcC-CcEE
Q 017718 178 FLTLKNFQGLDLGKMDEANDSGLAAYVAGQIDRSL--SW-KWLQTITKLPILVKGVLTA------EDARIAVQAG-AAGI 247 (367)
Q Consensus 178 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~--~~-~~l~~~~~~Pv~vK~v~~~------~~a~~~~~~G-~d~i 247 (367)
+ +. +. .+++. .. +++++.++.|+.+|..... ..+..+.+.+ ++++
T Consensus 171 ~---~~--------------------l~--~~~~~~~~i~~~v~~~~~~pv~vK~~p~~~~~~~~~~~~~~~~~~~~~~i 225 (354)
T 3tjx_A 171 K---PQ--------------------VA--YDFDAMRQCLTAVSEVYPHSFGVKMPPYFDFAAFDAAAEILNEFPKVQFI 225 (354)
T ss_dssp --------------------------CT--TSHHHHHHHHHHHHHHCCSCEEEEECCCCSHHHHHHHHHHHHTCTTEEEE
T ss_pred h---hh--------------------hc--cCHHHHHHHHHHHHHHhhcccccccCCCCCchhHHHHHHHHHhhcccchh
Confidence 0 00 00 01111 11 2777888999999998532 1233444444 4444
Q ss_pred EEcCCCC-------------------CCCCCccchH----HHHHHHHHHhcCCCcEEEecCCCCHHHHHHHHHcCCCEEE
Q 017718 248 IVSNHGA-------------------RQLDYVPATI----MALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIF 304 (367)
Q Consensus 248 ~vs~~gg-------------------~~~~~~~~~~----~~l~~i~~~~~~~~~via~GGI~~~~dv~kal~lGAd~V~ 304 (367)
...|+-. .+..+|++.+ +.+.++++.. .++|||++|||.|++|++++|.+|||+||
T Consensus 226 ~~i~t~~~~~~id~~~~~~~~~~~~~~GGlSG~~~~~~a~~~v~~~~~~~-~~~pIIg~GGI~s~~Da~e~i~aGAs~Vq 304 (354)
T 3tjx_A 226 TCINSIGNGLVIDAETESVVIKPKQGFGGLGGRYVLPTALANINAFYRRC-PGKLIFGCGGVYTGEDAFLHVLAGASMVQ 304 (354)
T ss_dssp EECCCEEEEECEETTTTEESCSGGGGEEEEEGGGGHHHHHHHHHHHHHHC-TTSEEEEESSCCSHHHHHHHHHHTEEEEE
T ss_pred heecccccccccccccccccccCcccccccCchhhHHHHHHHHHHHHHhc-CCCcEEEeCCcCCHHHHHHHHHcCCCEEE
Confidence 4433211 0112344443 3455555544 37899999999999999999999999999
Q ss_pred echHHHHHhhccChHHHHHHHHHHHHHHHHHHHHhCCCChhhhcccc
Q 017718 305 IGRPVVYSLAAEGEKGVRRVLEMLREEFELAMALSGCRSLKEITRDH 351 (367)
Q Consensus 305 ig~~~l~~l~~~G~~~v~~~i~~l~~el~~~m~~~G~~si~~l~~~~ 351 (367)
|||+++| +|+. ++..+++||+.+|+..|++|++|+++..
T Consensus 305 v~Ta~~y----~GP~----~~~~I~~~L~~~L~~~G~~si~e~~G~~ 343 (354)
T 3tjx_A 305 VGTALQE----EGPS----IFERLTSELLGVMAKKRYQTLDEFRGKV 343 (354)
T ss_dssp ECHHHHH----HCTT----HHHHHHHHHHHHHHHHTCCSGGGTTTCC
T ss_pred EChhhhh----cCch----HHHHHHHHHHHHHHHcCCCCHHHHhChh
Confidence 9999988 3775 6788999999999999999999999864
|
| >3b0p_A TRNA-dihydrouridine synthase; TIM barrel, oxidoreductase; HET: FMN; 1.70A {Thermus thermophilus} PDB: 3b0u_X* 3b0v_C* | Back alignment and structure |
|---|
Probab=99.84 E-value=2e-19 Score=175.50 Aligned_cols=238 Identities=18% Similarity=0.214 Sum_probs=169.8
Q ss_pred eccceEeCcccchhccCChhhHHHHHHHHHcCC-ceeecCCCCCC------HHHHHhhCC--CceEEEEeecCCHHHHHH
Q 017718 70 ISMPIMIAPTAMQKMAHPEGEYATARAASAAGT-IMTLSSWSTSS------VEEVASTGP--GIRFFQLYVYKDRNVVAQ 140 (367)
Q Consensus 70 l~~Pi~iAPm~~~~l~~~~~e~~~a~aa~~~G~-~~~vs~~~~~~------~e~i~~~~~--~~~~~QLy~~~d~~~~~~ 140 (367)
+++||++|||++.+ +..++..+++.|. .++++++.+.. .+++.+..+ .+.++||+ +.+++...+
T Consensus 2 l~nriv~APM~g~t------d~~~r~~~r~~Gg~gli~te~~~~~~~~~~~~~~~~~~~~~~~p~~vQL~-g~~p~~~~~ 74 (350)
T 3b0p_A 2 LDPRLSVAPMVDRT------DRHFRFLVRQVSLGVRLYTEMTVDQAVLRGNRERLLAFRPEEHPIALQLA-GSDPKSLAE 74 (350)
T ss_dssp CCCSEEECCCTTTS------SHHHHHHHHHHCSSSBEECCCEEHHHHHHSCHHHHHCCCGGGCSEEEEEE-CSCHHHHHH
T ss_pred CCCCEEECCCCCCC------HHHHHHHHHHcCCCCEEEeCCEEechhhcCCHHHHhccCCCCCeEEEEeC-CCCHHHHHH
Confidence 67899999998643 7788889999986 77788774321 113333333 68999998 778999999
Q ss_pred HHHHHHHcCCcEEEEecCCCCCCchhHHhhhhcCCCCccccccccccccCccccccchhhHHHhhhccCccccH---HHH
Q 017718 141 LVRRAERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLTLKNFQGLDLGKMDEANDSGLAAYVAGQIDRSLSW---KWL 217 (367)
Q Consensus 141 ~l~ra~~~G~~ai~itvd~p~~g~r~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~---~~l 217 (367)
.+++++++|++.|.||++||..-.|. .++ ++ .+.. ++.+-. +.+
T Consensus 75 aA~~a~~~G~D~IeIn~gcP~~~~~~----d~~-----------------------G~----~l~~--~~~~~~eiv~av 121 (350)
T 3b0p_A 75 AARIGEAFGYDEINLNLGCPSEKAQE----GGY-----------------------GA----CLLL--DLARVREILKAM 121 (350)
T ss_dssp HHHHHHHTTCSEEEEEECCCSHHHHH----TTC-----------------------GG----GGGG--CHHHHHHHHHHH
T ss_pred HHHHHHHcCCCEEEECCcCCCCcCcC----CCc-----------------------ch----hHHh--CHHHHHHHHHHH
Confidence 99999999999999999999742221 011 00 1111 333322 377
Q ss_pred HhhcCCCEEEEecCC----------HHHHHHHHHcCCcEEEEcCCCCCC---CC------CccchHHHHHHHHHHhcCCC
Q 017718 218 QTITKLPILVKGVLT----------AEDARIAVQAGAAGIIVSNHGARQ---LD------YVPATIMALEEVVKATQGRI 278 (367)
Q Consensus 218 ~~~~~~Pv~vK~v~~----------~~~a~~~~~~G~d~i~vs~~gg~~---~~------~~~~~~~~l~~i~~~~~~~~ 278 (367)
++.+++||++|.... .+.++.+.++|+|+|+|++ ++. .. ..+..++.+.++++.++ ++
T Consensus 122 ~~~v~~PV~vKiR~g~~~~~~~~~~~~~a~~l~~aG~d~I~V~~--r~~~~g~~g~~~~~~~~~~~~~i~~ik~~~~-~i 198 (350)
T 3b0p_A 122 GEAVRVPVTVKMRLGLEGKETYRGLAQSVEAMAEAGVKVFVVHA--RSALLALSTKANREIPPLRHDWVHRLKGDFP-QL 198 (350)
T ss_dssp HHHCSSCEEEEEESCBTTCCCHHHHHHHHHHHHHTTCCEEEEEC--SCBC----------CCCCCHHHHHHHHHHCT-TS
T ss_pred HHHhCCceEEEEecCcCccccHHHHHHHHHHHHHcCCCEEEEec--CchhcccCcccccCCCcccHHHHHHHHHhCC-CC
Confidence 887899999998632 3457899999999999964 321 11 11246888888888763 79
Q ss_pred cEEEecCCCCHHHHHHHHHcCCCEEEechHHHHHh-----h---ccC---hHHHHHHHHHHHHHHHHHHHHhCCCChhhh
Q 017718 279 PVFLDGGVRRGTDVFKALALGASGIFIGRPVVYSL-----A---AEG---EKGVRRVLEMLREEFELAMALSGCRSLKEI 347 (367)
Q Consensus 279 ~via~GGI~~~~dv~kal~lGAd~V~ig~~~l~~l-----~---~~G---~~~v~~~i~~l~~el~~~m~~~G~~si~~l 347 (367)
|||++|||+|++|+.++++ |||+||+||+++..- . ..| .....+.++.+.++++..+. .|. .+.++
T Consensus 199 PVianGgI~s~eda~~~l~-GaD~V~iGRa~l~~P~l~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~-~g~-~~~~~ 275 (350)
T 3b0p_A 199 TFVTNGGIRSLEEALFHLK-RVDGVMLGRAVYEDPFVLEEADRRVFGLPRRPSRLEVARRMRAYLEEEVL-KGT-PPWAV 275 (350)
T ss_dssp EEEEESSCCSHHHHHHHHT-TSSEEEECHHHHHCGGGGTTHHHHTTCCSCCCCHHHHHHHHHHHHHHHHH-HTC-CHHHH
T ss_pred eEEEECCcCCHHHHHHHHh-CCCEEEECHHHHhCcHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHHHH-cCc-cHHHH
Confidence 9999999999999999998 999999999886421 0 112 12345677788888887777 465 68888
Q ss_pred ccccee
Q 017718 348 TRDHIV 353 (367)
Q Consensus 348 ~~~~l~ 353 (367)
+++..+
T Consensus 276 ~kh~~~ 281 (350)
T 3b0p_A 276 LRHMLN 281 (350)
T ss_dssp HTTSTT
T ss_pred HHHHHH
Confidence 887664
|
| >3usb_A Inosine-5'-monophosphate dehydrogenase; structural genomics, center for structural genomics of infec diseases, csgid, TIM barrel, CBS-domain; HET: MSE IMP; 2.38A {Bacillus anthracis} PDB: 3tsd_A* 3tsb_A* | Back alignment and structure |
|---|
Probab=99.84 E-value=2.2e-19 Score=183.30 Aligned_cols=135 Identities=24% Similarity=0.339 Sum_probs=109.6
Q ss_pred HHHhhcC-CCEEEEecCCHHHHHHHHHcCCcEEEEcCCCCCC------CCCccchHHHHHHHHHHhcC-CCcEEEecCCC
Q 017718 216 WLQTITK-LPILVKGVLTAEDARIAVQAGAAGIIVSNHGARQ------LDYVPATIMALEEVVKATQG-RIPVFLDGGVR 287 (367)
Q Consensus 216 ~l~~~~~-~Pv~vK~v~~~~~a~~~~~~G~d~i~vs~~gg~~------~~~~~~~~~~l~~i~~~~~~-~~~via~GGI~ 287 (367)
++++.++ +||+++.+.+.++|+.+.++|+|+|+++.++|.- ...+.+.+..+.++.+.++. ++|||++|||+
T Consensus 290 ~i~~~~~~~~vi~g~v~t~e~a~~~~~aGad~i~vg~g~gsi~~~~~~~g~g~p~~~~l~~v~~~~~~~~iPVIa~GGI~ 369 (511)
T 3usb_A 290 EVRAKYPSLNIIAGNVATAEATKALIEAGANVVKVGIGPGSICTTRVVAGVGVPQLTAVYDCATEARKHGIPVIADGGIK 369 (511)
T ss_dssp HHHHHCTTSEEEEEEECSHHHHHHHHHHTCSEEEECSSCSTTCCHHHHHCCCCCHHHHHHHHHHHHHTTTCCEEEESCCC
T ss_pred HHHHhCCCceEEeeeeccHHHHHHHHHhCCCEEEECCCCccccccccccCCCCCcHHHHHHHHHHHHhCCCcEEEeCCCC
Confidence 7888774 8999999999999999999999999996554431 13457888899888776643 69999999999
Q ss_pred CHHHHHHHHHcCCCEEEechHHHH--------------------Hhhc----------------------cChHH-----
Q 017718 288 RGTDVFKALALGASGIFIGRPVVY--------------------SLAA----------------------EGEKG----- 320 (367)
Q Consensus 288 ~~~dv~kal~lGAd~V~ig~~~l~--------------------~l~~----------------------~G~~~----- 320 (367)
++.|+.|++++|||+|++||+|+. +++. +|.++
T Consensus 370 ~~~di~kala~GA~~V~vGs~~~~~~es~g~~~~~~g~~~k~~~gm~s~~a~~~~~~~r~~~~~~~~~~~eG~~~~~~~~ 449 (511)
T 3usb_A 370 YSGDMVKALAAGAHVVMLGSMFAGVAESPGETEIYQGRQFKVYRGMGSVGAMEKGSKDRYFQEGNKKLVPEGIEGRVPYK 449 (511)
T ss_dssp SHHHHHHHHHTTCSEEEESTTTTTBTTSSSCEEECSSSEEEC----------------------------------CBCC
T ss_pred CHHHHHHHHHhCchhheecHHHhcCccCchhhhhccCeeeeeeeccccHHHHhcccccchhccccccccCCCcEEeCCCC
Confidence 999999999999999999999743 3322 12222
Q ss_pred --HHHHHHHHHHHHHHHHHHhCCCChhhhccc
Q 017718 321 --VRRVLEMLREEFELAMALSGCRSLKEITRD 350 (367)
Q Consensus 321 --v~~~i~~l~~el~~~m~~~G~~si~~l~~~ 350 (367)
+.++++.|..+|+..|.++|++++.||+..
T Consensus 450 ~~~~~~~~~~~~~lr~~m~~~G~~~i~~l~~~ 481 (511)
T 3usb_A 450 GPLADTVHQLVGGLRAGMGYCGAQDLEFLREN 481 (511)
T ss_dssp BCHHHHHHHHHHHHHHHHHHTTCSBHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHHhcCcccHHHHHhC
Confidence 678999999999999999999999999854
|
| >4avf_A Inosine-5'-monophosphate dehydrogenase; oxidoreductase; 2.23A {Pseudomonas aeruginosa} | Back alignment and structure |
|---|
Probab=99.83 E-value=9.2e-19 Score=177.97 Aligned_cols=136 Identities=23% Similarity=0.404 Sum_probs=110.8
Q ss_pred HHHHhhc-CCCEEEEecCCHHHHHHHHHcCCcEEEEcCCCCCC------CCCccchHHHHHHHHHHhcC-CCcEEEecCC
Q 017718 215 KWLQTIT-KLPILVKGVLTAEDARIAVQAGAAGIIVSNHGARQ------LDYVPATIMALEEVVKATQG-RIPVFLDGGV 286 (367)
Q Consensus 215 ~~l~~~~-~~Pv~vK~v~~~~~a~~~~~~G~d~i~vs~~gg~~------~~~~~~~~~~l~~i~~~~~~-~~~via~GGI 286 (367)
+++++.+ ++||+++.+.+.++|+.+.++|+|+|.+++.+|.. ...+.+.++.+.++++.++. ++|||++|||
T Consensus 262 ~~i~~~~p~~~Vi~g~v~t~e~a~~l~~aGaD~I~vg~g~Gs~~~t~~~~g~g~p~~~~l~~v~~~~~~~~iPVIa~GGI 341 (490)
T 4avf_A 262 RWVKQTFPDVQVIGGNIATAEAAKALAEAGADAVKVGIGPGSICTTRIVAGVGVPQISAIANVAAALEGTGVPLIADGGI 341 (490)
T ss_dssp HHHHHHCTTSEEEEEEECSHHHHHHHHHTTCSEEEECSSCSTTCHHHHHTCBCCCHHHHHHHHHHHHTTTTCCEEEESCC
T ss_pred HHHHHHCCCceEEEeeeCcHHHHHHHHHcCCCEEEECCCCCcCCCccccCCCCccHHHHHHHHHHHhccCCCcEEEeCCC
Confidence 3788887 78999999999999999999999999996544431 23567899999999887643 6999999999
Q ss_pred CCHHHHHHHHHcCCCEEEechHHH--------------------HHhhc---------------------------cChH
Q 017718 287 RRGTDVFKALALGASGIFIGRPVV--------------------YSLAA---------------------------EGEK 319 (367)
Q Consensus 287 ~~~~dv~kal~lGAd~V~ig~~~l--------------------~~l~~---------------------------~G~~ 319 (367)
+++.|+.|++++|||+||+|++|+ |++++ +|.+
T Consensus 342 ~~~~di~kal~~GAd~V~vGs~~~~~~Esp~~~~~~~g~~~k~~~gm~s~~a~~~~~~~~~r~~~~~~~~~~~~~~eg~~ 421 (490)
T 4avf_A 342 RFSGDLAKAMVAGAYCVMMGSMFAGTEEAPGEIELFQGRSYKSYRGMGSLGAMSGSQGSSDRYFQDASAGAEKLVPEGIE 421 (490)
T ss_dssp CSHHHHHHHHHHTCSEEEECTTTTTBTTSSSCEEEETTEEEEC-------------------------------------
T ss_pred CCHHHHHHHHHcCCCeeeecHHHhcCCCCCCceEeECCeEeeeecCcccHHHHhhcccccchhhcccccccccccCCCcE
Confidence 999999999999999999999874 23221 1111
Q ss_pred -------HHHHHHHHHHHHHHHHHHHhCCCChhhhccc
Q 017718 320 -------GVRRVLEMLREEFELAMALSGCRSLKEITRD 350 (367)
Q Consensus 320 -------~v~~~i~~l~~el~~~m~~~G~~si~~l~~~ 350 (367)
.+.+++..|..+|+..|.++|+++|.||+..
T Consensus 422 ~~v~~~g~~~~~~~~~~~~lr~~~~~~g~~~i~~l~~~ 459 (490)
T 4avf_A 422 GRVPYKGALSAIVHQLMGGLRAAMGYTGSADIQQMRTQ 459 (490)
T ss_dssp --CBCCBCHHHHHHHHHHHHHHHHHHHTCSSHHHHHHS
T ss_pred EcCCcCCCHHHHHHHHHHHHHHHHHhcCcCcHHHHHhC
Confidence 3668999999999999999999999999864
|
| >1vrd_A Inosine-5'-monophosphate dehydrogenase; TM1347, structural G joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.18A {Thermotoga maritima} SCOP: c.1.5.1 | Back alignment and structure |
|---|
Probab=99.82 E-value=1.4e-18 Score=176.84 Aligned_cols=136 Identities=25% Similarity=0.427 Sum_probs=113.0
Q ss_pred HHHhhc-CCCEEEEecCCHHHHHHHHHcCCcEEEEcCCCCCC-----C-CCccchHHHHHHHHHHhcC-CCcEEEecCCC
Q 017718 216 WLQTIT-KLPILVKGVLTAEDARIAVQAGAAGIIVSNHGARQ-----L-DYVPATIMALEEVVKATQG-RIPVFLDGGVR 287 (367)
Q Consensus 216 ~l~~~~-~~Pv~vK~v~~~~~a~~~~~~G~d~i~vs~~gg~~-----~-~~~~~~~~~l~~i~~~~~~-~~~via~GGI~ 287 (367)
++++.+ ++||+++.+.+.++++.+.++|+|+|+++++||+. . ..+.++...++++.+.++. ++|||++|||+
T Consensus 271 ~i~~~~p~~pvi~g~~~t~e~a~~l~~~G~d~I~v~~~~G~~~~~~~~~~~g~p~~~~l~~v~~~~~~~~ipvia~GGI~ 350 (494)
T 1vrd_A 271 MIKADYPDLPVVAGNVATPEGTEALIKAGADAVKVGVGPGSICTTRVVAGVGVPQLTAVMECSEVARKYDVPIIADGGIR 350 (494)
T ss_dssp HHHHHCTTSCEEEEEECSHHHHHHHHHTTCSEEEECSSCSTTCHHHHHHCCCCCHHHHHHHHHHHHHTTTCCEEEESCCC
T ss_pred HHHHHCCCceEEeCCcCCHHHHHHHHHcCCCEEEEcCCCCccccccccCCCCccHHHHHHHHHHHHhhcCCCEEEECCcC
Confidence 888888 79999999999999999999999999999887631 1 2356788888888877543 79999999999
Q ss_pred CHHHHHHHHHcCCCEEEechHHHH--------------------Hhhc-----cC--------------hHH--------
Q 017718 288 RGTDVFKALALGASGIFIGRPVVY--------------------SLAA-----EG--------------EKG-------- 320 (367)
Q Consensus 288 ~~~dv~kal~lGAd~V~ig~~~l~--------------------~l~~-----~G--------------~~~-------- 320 (367)
++.|+.|+|++|||+|++||+|+. ++++ .| ++|
T Consensus 351 ~~~di~kala~GAd~V~iGr~~l~~~e~~~~~~~~~~~~~k~~~g~~~~~a~~~g~~~~~~~~~~~~~~~~g~~~~~~~~ 430 (494)
T 1vrd_A 351 YSGDIVKALAAGAESVMVGSIFAGTEEAPGETILYQGRKYKAYRGMGSLGAMRSGSADRYGQEGENKFVPEGIEGMVPYK 430 (494)
T ss_dssp SHHHHHHHHHTTCSEEEESHHHHTBTTSSSEEEEETTEEEEECBCCC-------------------------CBCCEECC
T ss_pred CHHHHHHHHHcCCCEEEECHHHhcCCcCCcceEEECCEEEEEEeccchHHHHhhccccchhhcccccccCCcceEccCcC
Confidence 999999999999999999999972 2211 00 233
Q ss_pred --HHHHHHHHHHHHHHHHHHhCCCChhhhcccc
Q 017718 321 --VRRVLEMLREEFELAMALSGCRSLKEITRDH 351 (367)
Q Consensus 321 --v~~~i~~l~~el~~~m~~~G~~si~~l~~~~ 351 (367)
+.++++.+..+|+..|.++|+.++.+|++..
T Consensus 431 ~~v~~~~~~l~~~l~~~~~~~G~~~~~~l~~~~ 463 (494)
T 1vrd_A 431 GTVKDVVHQLVGGLRSGMGYIGARTIKELQEKA 463 (494)
T ss_dssp BCHHHHHHHHHHHHHHHHHHHTCSSHHHHHHHC
T ss_pred CCHHHHHHHHHHHHHHHhhhcCCCCHHHHHhhC
Confidence 6799999999999999999999999998653
|
| >4fxs_A Inosine-5'-monophosphate dehydrogenase; structural genomics, IMPDH, IMP, mycophenolic acid, MOA; HET: IMP MOA; 2.24A {Vibrio cholerae o1 biovar el tor} | Back alignment and structure |
|---|
Probab=99.81 E-value=1.9e-18 Score=175.86 Aligned_cols=135 Identities=24% Similarity=0.336 Sum_probs=111.4
Q ss_pred HHHhhc-CCCEEEEecCCHHHHHHHHHcCCcEEEEcCCCCCC------CCCccchHHHHHHHHHHhcC-CCcEEEecCCC
Q 017718 216 WLQTIT-KLPILVKGVLTAEDARIAVQAGAAGIIVSNHGARQ------LDYVPATIMALEEVVKATQG-RIPVFLDGGVR 287 (367)
Q Consensus 216 ~l~~~~-~~Pv~vK~v~~~~~a~~~~~~G~d~i~vs~~gg~~------~~~~~~~~~~l~~i~~~~~~-~~~via~GGI~ 287 (367)
++++.+ ++||+++.+.+.+.|+.+.++|+|+|++++.+|.. ...+.+.+..+.++.+.++. .+|||++|||+
T Consensus 265 ~ir~~~p~~~Vi~g~v~t~e~a~~l~~aGaD~I~Vg~g~Gs~~~tr~~~g~g~p~~~~i~~v~~~~~~~~iPVIa~GGI~ 344 (496)
T 4fxs_A 265 ETRAAYPHLEIIGGNVATAEGARALIEAGVSAVKVGIGPGSICTTRIVTGVGVPQITAIADAAGVANEYGIPVIADGGIR 344 (496)
T ss_dssp HHHHHCTTCCEEEEEECSHHHHHHHHHHTCSEEEECSSCCTTBCHHHHHCCCCCHHHHHHHHHHHHGGGTCCEEEESCCC
T ss_pred HHHHHCCCceEEEcccCcHHHHHHHHHhCCCEEEECCCCCcCcccccccCCCccHHHHHHHHHHHhccCCCeEEEeCCCC
Confidence 788887 79999999999999999999999999997544321 12457788999999887643 69999999999
Q ss_pred CHHHHHHHHHcCCCEEEechHHHHHhhcc--------------------------------------------Ch-----
Q 017718 288 RGTDVFKALALGASGIFIGRPVVYSLAAE--------------------------------------------GE----- 318 (367)
Q Consensus 288 ~~~dv~kal~lGAd~V~ig~~~l~~l~~~--------------------------------------------G~----- 318 (367)
++.|+.|++++|||+||+||+|+....+. |.
T Consensus 345 ~~~di~kala~GAd~V~iGs~f~~t~Espg~~~~~~g~~~k~~~gm~s~~a~~~~~~~r~~~~~~~~~~~~~eg~~~~v~ 424 (496)
T 4fxs_A 345 FSGDISKAIAAGASCVMVGSMFAGTEEAPGEVILYQGRSYKAYRGMGSLGAMSKGSSDRYFQTDNAADKLVPEGIEGRIA 424 (496)
T ss_dssp SHHHHHHHHHTTCSEEEESTTTTTBTTSSSCCEESSSCEEEEEECTTSHHHHHSSSCCSTTTC---CCCCCCSBCEEEEE
T ss_pred CHHHHHHHHHcCCCeEEecHHHhcCCCCCcceeeeCCeEeeeecccchHHHHhccccccccccccccccccCCccEEeCC
Confidence 99999999999999999999884321110 10
Q ss_pred --HHHHHHHHHHHHHHHHHHHHhCCCChhhhccc
Q 017718 319 --KGVRRVLEMLREEFELAMALSGCRSLKEITRD 350 (367)
Q Consensus 319 --~~v~~~i~~l~~el~~~m~~~G~~si~~l~~~ 350 (367)
..+.+++..|..+|+..|.++|+++|.||+..
T Consensus 425 ~~g~~~~~~~~~~~~l~~~~~~~g~~~i~~l~~~ 458 (496)
T 4fxs_A 425 YKGHLKEIIHQQMGGLRSCMGLTGSATVEDLRTK 458 (496)
T ss_dssp CCBCHHHHHHHHHHHHHHHHHHHTCSBHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHHHHhcCcCcHHHHHhC
Confidence 13779999999999999999999999999853
|
| >1zfj_A Inosine monophosphate dehydrogenase; IMPDH, CBS domains, oxidoreductase; HET: IMP; 1.90A {Streptococcus pyogenes} SCOP: c.1.5.1 d.37.1.1 | Back alignment and structure |
|---|
Probab=99.77 E-value=1.3e-17 Score=169.63 Aligned_cols=137 Identities=18% Similarity=0.272 Sum_probs=113.1
Q ss_pred HHHhhc-CCCEEEEecCCHHHHHHHHHcCCcEEEEcCCCCCC------CCCccchHHHHHHHHHHhc-CCCcEEEecCCC
Q 017718 216 WLQTIT-KLPILVKGVLTAEDARIAVQAGAAGIIVSNHGARQ------LDYVPATIMALEEVVKATQ-GRIPVFLDGGVR 287 (367)
Q Consensus 216 ~l~~~~-~~Pv~vK~v~~~~~a~~~~~~G~d~i~vs~~gg~~------~~~~~~~~~~l~~i~~~~~-~~~~via~GGI~ 287 (367)
++++.+ ++|++.+++.+.++++.+.++|+|+|.+++.+|.. ..++.+..+.+.++..... .++|||++|||+
T Consensus 267 ~l~~~~p~~pvi~G~v~t~~~a~~~~~~Gad~I~vg~g~g~~~~tr~~~~~~~p~~~~l~~~~~~~~~~~ipvia~GGi~ 346 (491)
T 1zfj_A 267 EIRAHFPNRTLIAGNIATAEGARALYDAGVDVVKVGIGPGSICTTRVVAGVGVPQVTAIYDAAAVAREYGKTIIADGGIK 346 (491)
T ss_dssp HHHHHCSSSCEEEEEECSHHHHHHHHHTTCSEEEECSSCCTTBCHHHHTCCCCCHHHHHHHHHHHHHHTTCEEEEESCCC
T ss_pred HHHHHCCCCcEeCCCccCHHHHHHHHHcCCCEEEECccCCcceEEeeecCCCCCcHHHHHHHHHHHhhcCCCEEeeCCCC
Confidence 788888 89999999999999999999999999998755532 1235678888888876543 379999999999
Q ss_pred CHHHHHHHHHcCCCEEEechHHHH--------------------Hhh-------------------------ccChHH--
Q 017718 288 RGTDVFKALALGASGIFIGRPVVY--------------------SLA-------------------------AEGEKG-- 320 (367)
Q Consensus 288 ~~~dv~kal~lGAd~V~ig~~~l~--------------------~l~-------------------------~~G~~~-- 320 (367)
++.|+.|++++|||+|++||+|+. +++ .+|.++
T Consensus 347 ~~~di~kal~~GA~~v~vG~~~~~~~e~~~~~~~~~g~~~k~~~g~~~~~a~~~~~~~~~~~g~~~~~~~~~~~g~~~~~ 426 (491)
T 1zfj_A 347 YSGDIVKALAAGGNAVMLGSMFAGTDEAPGETEIYQGRKYKTYRGMGSIAAMKKGSSDRYFQGSVNEANKLVPEGIEGRV 426 (491)
T ss_dssp SHHHHHHHHHTTCSEEEESTTTTTBSSCCCCEEEETTEEEEEEECTTSHHHHCC--------------CCCCCSBCEEEE
T ss_pred CHHHHHHHHHcCCcceeeCHHhhCCCcCcceEEEECCEEEEEEecccCHHHHhccccccccccccccccccCcCcceEec
Confidence 999999999999999999999972 111 112111
Q ss_pred -----HHHHHHHHHHHHHHHHHHhCCCChhhhcccce
Q 017718 321 -----VRRVLEMLREEFELAMALSGCRSLKEITRDHI 352 (367)
Q Consensus 321 -----v~~~i~~l~~el~~~m~~~G~~si~~l~~~~l 352 (367)
+.++++.|..||+..|.++|+.++.+|+....
T Consensus 427 ~~~~~~~~~~~~l~~~l~~~~~~~G~~~~~~l~~~~~ 463 (491)
T 1zfj_A 427 AYKGAASDIVFQMLGGIRSGMGYVGAGDIQELHENAQ 463 (491)
T ss_dssp ECCBCHHHHHHHHHHHHHHHHHHTTCSSHHHHHHHCC
T ss_pred CcCCCHHHHHHHHHHHHHHHhhhcCcccHHHHHhcCc
Confidence 88999999999999999999999999986533
|
| >1jcn_A Inosine monophosphate dehydrogenase I; IMPD, IMPDH, guanine nucleotide synthesis, oxidoreductase; HET: CPR; 2.50A {Homo sapiens} SCOP: c.1.5.1 d.37.1.1 PDB: 1jr1_A* 1nf7_A* 1b3o_A* 1nfb_A* | Back alignment and structure |
|---|
Probab=99.76 E-value=1.2e-17 Score=170.94 Aligned_cols=134 Identities=23% Similarity=0.365 Sum_probs=105.1
Q ss_pred HHHHhhc-CCCEEEEecCCHHHHHHHHHcCCcEEEEcCCCCCC------CCCccc---hHHHHHHHHHHhcCCCcEEEec
Q 017718 215 KWLQTIT-KLPILVKGVLTAEDARIAVQAGAAGIIVSNHGARQ------LDYVPA---TIMALEEVVKATQGRIPVFLDG 284 (367)
Q Consensus 215 ~~l~~~~-~~Pv~vK~v~~~~~a~~~~~~G~d~i~vs~~gg~~------~~~~~~---~~~~l~~i~~~~~~~~~via~G 284 (367)
+++++.+ ++||++|.+.+.++|+.+.++|+|+|++++|+|.. .+++.+ .+..++++++.+ ++|||++|
T Consensus 288 ~~i~~~~~~~pvi~~~v~t~~~a~~l~~aGad~I~vg~~~G~~~~t~~~~~~g~~~~~~~~~~~~~~~~~--~ipVia~G 365 (514)
T 1jcn_A 288 HYIKQKYPHLQVIGGNVVTAAQAKNLIDAGVDGLRVGMGCGSICITQEVMACGRPQGTAVYKVAEYARRF--GVPIIADG 365 (514)
T ss_dssp HHHHHHCTTCEEEEEEECSHHHHHHHHHHTCSEEEECSSCSCCBTTBCCCSCCCCHHHHHHHHHHHHGGG--TCCEEEES
T ss_pred HHHHHhCCCCceEecccchHHHHHHHHHcCCCEEEECCCCCcccccccccCCCccchhHHHHHHHHHhhC--CCCEEEEC
Confidence 3788887 89999999999999999999999999997764421 123433 445555655544 79999999
Q ss_pred CCCCHHHHHHHHHcCCCEEEechHHHH--------------------Hhhc---------------------cChHHH--
Q 017718 285 GVRRGTDVFKALALGASGIFIGRPVVY--------------------SLAA---------------------EGEKGV-- 321 (367)
Q Consensus 285 GI~~~~dv~kal~lGAd~V~ig~~~l~--------------------~l~~---------------------~G~~~v-- 321 (367)
||+++.|+.|++++|||+|++||+|+. ++.. .+++|+
T Consensus 366 GI~~~~di~kala~GAd~V~iG~~~l~~~e~~~~~~~~~g~~~k~~~g~~s~~~~~~~~~~~~~~~~~~~~~~~~~gv~~ 445 (514)
T 1jcn_A 366 GIQTVGHVVKALALGASTVMMGSLLAATTEAPGEYFFSDGVRLKKYRGMGSLDAMEKSSSSQKRYFSEGDKVKIAQGVSG 445 (514)
T ss_dssp CCCSHHHHHHHHHTTCSEEEESTTTTTSTTSSCC----------------------------------------------
T ss_pred CCCCHHHHHHHHHcCCCeeeECHHHHcCCcCCcceEeECCEEEEEecCcCCHHHHhhccccchhhccccccceeccccee
Confidence 999999999999999999999998853 1110 022444
Q ss_pred --------HHHHHHHHHHHHHHHHHhCCCChhhhccc
Q 017718 322 --------RRVLEMLREEFELAMALSGCRSLKEITRD 350 (367)
Q Consensus 322 --------~~~i~~l~~el~~~m~~~G~~si~~l~~~ 350 (367)
.++++.|..||+..|.++|+++++||++.
T Consensus 446 ~~~~~g~~~~~i~~l~~~l~~~m~~~G~~~i~~l~~~ 482 (514)
T 1jcn_A 446 SIQDKGSIQKFVPYLIAGIQHGCQDIGARSLSVLRSM 482 (514)
T ss_dssp ----CCCHHHHHHHHHHHHHHHHHHHTCSBHHHHHHH
T ss_pred cCCCcccHHHHHHHHHHHHHHHHHhhCcccHHHHHhh
Confidence 89999999999999999999999999975
|
| >2cu0_A Inosine-5'-monophosphate dehydrogenase; structural genomics, pyrococcus horikoshii OT3, riken structural genomics/PROT initiative, RSGI; HET: XMP; 2.10A {Pyrococcus horikoshii} SCOP: c.1.5.1 | Back alignment and structure |
|---|
Probab=99.75 E-value=2.5e-17 Score=167.38 Aligned_cols=132 Identities=23% Similarity=0.335 Sum_probs=105.3
Q ss_pred HHHhhcCCCEEEEecCCHHHHHHHHHcCCcEEEEcCCCCCC-------CCCccchHHHHHHHHHHhc-CCCcEEEecCCC
Q 017718 216 WLQTITKLPILVKGVLTAEDARIAVQAGAAGIIVSNHGARQ-------LDYVPATIMALEEVVKATQ-GRIPVFLDGGVR 287 (367)
Q Consensus 216 ~l~~~~~~Pv~vK~v~~~~~a~~~~~~G~d~i~vs~~gg~~-------~~~~~~~~~~l~~i~~~~~-~~~~via~GGI~ 287 (367)
++++.+++|+++|++.+.++++.+. |+|+|.+ +.|+.. ..+|.++...+.++.+... .++|||++|||+
T Consensus 262 ~l~~~~~vpvi~k~v~~~~~a~~l~--G~d~v~v-g~g~g~~~~~r~~~~~g~~~~~~l~~~~~~~~~~~vpVia~GGi~ 338 (486)
T 2cu0_A 262 EMRQKVDADFIVGNIANPKAVDDLT--FADAVKV-GIGPGSICTTRIVAGVGVPQITAVAMVADRAQEYGLYVIADGGIR 338 (486)
T ss_dssp HHHHTCCSEEEEEEECCHHHHTTCT--TSSEEEE-CSSCSTTBCHHHHTCCCCCHHHHHHHHHHHHHHHTCEEEEESCCC
T ss_pred HHHHHhCCccccCCcCCHHHHHHhh--CCCeEEE-eeeeccceeeeEEeecCcchHHHHHHHHHHHHHcCCcEEecCCCC
Confidence 7888889999999999999998888 9999999 555432 2345556666555544332 179999999999
Q ss_pred CHHHHHHHHHcCCCEEEechHHHH--------------------Hhhc-------------------------cChHH--
Q 017718 288 RGTDVFKALALGASGIFIGRPVVY--------------------SLAA-------------------------EGEKG-- 320 (367)
Q Consensus 288 ~~~dv~kal~lGAd~V~ig~~~l~--------------------~l~~-------------------------~G~~~-- 320 (367)
++.|++|+|++|||+|++|++|+. ++++ +|.++
T Consensus 339 ~~~di~kalalGA~~v~~g~~~~~~~e~~~~~~~~~g~~~k~~~g~~~~~a~~~~~~~r~~~g~~~~~~~~~~~g~~~~~ 418 (486)
T 2cu0_A 339 YSGDIVKAIAAGADAVMLGNLLAGTKEAPGKEVIINGRKYKQYRGMGSLGAMMKGGAERYYQGGYMKTRKFVPEGVEGVV 418 (486)
T ss_dssp SHHHHHHHHHTTCSEEEESTTTTTBTTCCSCEEEETTEEEEEEECTTSHHHHTC----------CCCCSCSSCCBCEEEE
T ss_pred CHHHHHHHHHcCCCceeeChhhhcCccCchhheeeCCcEEEEeecCCCHHHHhcccccccccccccccccccccceEEee
Confidence 999999999999999999999983 1111 22211
Q ss_pred -----HHHHHHHHHHHHHHHHHHhCCCChhhhccc
Q 017718 321 -----VRRVLEMLREEFELAMALSGCRSLKEITRD 350 (367)
Q Consensus 321 -----v~~~i~~l~~el~~~m~~~G~~si~~l~~~ 350 (367)
+.++++.|..+|+..|.++|+.++.+|+..
T Consensus 419 ~~~~~~~~~~~~l~~~lr~~m~~~G~~~~~~l~~~ 453 (486)
T 2cu0_A 419 PYRGTVSEVLYQLVGGLKAGMGYVGARNIRELKEK 453 (486)
T ss_dssp ECCBCHHHHHHHHHHHHHHHHHHTTCSBHHHHHHH
T ss_pred cccCCHHHHHHHHHHHHHHhcccCCcCCHHHHHhh
Confidence 889999999999999999999999999854
|
| >2z6i_A Trans-2-enoyl-ACP reductase II; fatty acid synthesis, antibiotics, oxidoreductase, flavoprotein; HET: FMN; 1.70A {Streptococcus pneumoniae} PDB: 2z6j_A* | Back alignment and structure |
|---|
Probab=99.72 E-value=2.9e-16 Score=152.11 Aligned_cols=184 Identities=20% Similarity=0.228 Sum_probs=136.3
Q ss_pred eEcCeeeccceEeCcccchhccCChhhHHHHHHHHHcCCceeecCCCCCCHHHH-------HhhCCCceEEEEeecCCHH
Q 017718 64 TVLGFKISMPIMIAPTAMQKMAHPEGEYATARAASAAGTIMTLSSWSTSSVEEV-------ASTGPGIRFFQLYVYKDRN 136 (367)
Q Consensus 64 ~i~g~~l~~Pi~iAPm~~~~l~~~~~e~~~a~aa~~~G~~~~vs~~~~~~~e~i-------~~~~~~~~~~QLy~~~d~~ 136 (367)
+++| ++.||+.+||++.+ +..++.++.+.|...++... ..+.+++ .+....++.+|++.. +++
T Consensus 7 ~~l~--~~~Pii~apM~g~s------~~~la~av~~aG~lG~i~~~-~~~~~~~~~~i~~i~~~~~~p~gvnl~~~-~~~ 76 (332)
T 2z6i_A 7 ELLK--IDYPIFQGGMAWVA------DGDLAGAVSKAGGLGIIGGG-NAPKEVVKANIDKIKSLTDKPFGVNIMLL-SPF 76 (332)
T ss_dssp HHHT--CSSSEEECCCTTTC------CHHHHHHHHHHTSBEEEECT-TCCHHHHHHHHHHHHHHCCSCEEEEECTT-STT
T ss_pred HHhC--CCCCEEeCCCCCCC------cHHHHHHHHhCCCcEEeCCC-CCCHHHHHHHHHHHHHhcCCCEEEEecCC-CCC
Confidence 3455 78899999998542 46799999999974334322 2233332 222235788999852 332
Q ss_pred HHHHHHHHHHHcCCcEEEEecCCCCCCchhHHhhhhcCCCCccccccccccccCccccccchhhHHHhhhccCccccHHH
Q 017718 137 VVAQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLTLKNFQGLDLGKMDEANDSGLAAYVAGQIDRSLSWKW 216 (367)
Q Consensus 137 ~~~~~l~ra~~~G~~ai~itvd~p~~g~r~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~ 216 (367)
..+.++++.++|++.+.++.++|.. ..++
T Consensus 77 -~~~~~~~a~~~g~d~V~~~~g~p~~--------------------------------------------------~i~~ 105 (332)
T 2z6i_A 77 -VEDIVDLVIEEGVKVVTTGAGNPSK--------------------------------------------------YMER 105 (332)
T ss_dssp -HHHHHHHHHHTTCSEEEECSSCGGG--------------------------------------------------THHH
T ss_pred -HHHHHHHHHHCCCCEEEECCCChHH--------------------------------------------------HHHH
Confidence 4567888999999999987765420 1124
Q ss_pred HHhhcCCCEEEEecCCHHHHHHHHHcCCcEEEEcCC--CCCCCCCccchHHHHHHHHHHhcCCCcEEEecCCCCHHHHHH
Q 017718 217 LQTITKLPILVKGVLTAEDARIAVQAGAAGIIVSNH--GARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFK 294 (367)
Q Consensus 217 l~~~~~~Pv~vK~v~~~~~a~~~~~~G~d~i~vs~~--gg~~~~~~~~~~~~l~~i~~~~~~~~~via~GGI~~~~dv~k 294 (367)
+++ .++||++|. .+.++++.+.++|+|+|++++. ||+. +..++++.++++++.+ ++|||++|||.+++|+.+
T Consensus 106 l~~-~g~~v~~~v-~~~~~a~~~~~~GaD~i~v~g~~~GG~~--g~~~~~~ll~~i~~~~--~iPViaaGGI~~~~~~~~ 179 (332)
T 2z6i_A 106 FHE-AGIIVIPVV-PSVALAKRMEKIGADAVIAEGMEAGGHI--GKLTTMTLVRQVATAI--SIPVIAAGGIADGEGAAA 179 (332)
T ss_dssp HHH-TTCEEEEEE-SSHHHHHHHHHTTCSCEEEECTTSSEEC--CSSCHHHHHHHHHHHC--SSCEEEESSCCSHHHHHH
T ss_pred HHH-cCCeEEEEe-CCHHHHHHHHHcCCCEEEEECCCCCCCC--CCccHHHHHHHHHHhc--CCCEEEECCCCCHHHHHH
Confidence 554 478999884 6889999999999999999764 4432 2356888999998877 799999999999999999
Q ss_pred HHHcCCCEEEechHHHHHhh
Q 017718 295 ALALGASGIFIGRPVVYSLA 314 (367)
Q Consensus 295 al~lGAd~V~ig~~~l~~l~ 314 (367)
++++|||+|++||+|+....
T Consensus 180 al~~GAdgV~vGs~~l~~~e 199 (332)
T 2z6i_A 180 GFMLGAEAVQVGTRFVVAKE 199 (332)
T ss_dssp HHHTTCSEEEECHHHHTBTT
T ss_pred HHHcCCCEEEecHHHhcCcc
Confidence 99999999999999987543
|
| >2gjl_A Hypothetical protein PA1024; 2-nitropropane dioxygenase, 2-nitropropane, FMN, oxidoreduct; HET: FMN; 2.00A {Pseudomonas aeruginosa PAO1} PDB: 2gjn_A* | Back alignment and structure |
|---|
Probab=99.72 E-value=5.3e-16 Score=149.88 Aligned_cols=194 Identities=19% Similarity=0.226 Sum_probs=138.8
Q ss_pred eeEcCeeeccceEeCcccchhccCChhhHHHHHHHHHcCCceeecCCCCCCHHHH-------HhhCCCceEEEEeecC--
Q 017718 63 TTVLGFKISMPIMIAPTAMQKMAHPEGEYATARAASAAGTIMTLSSWSTSSVEEV-------ASTGPGIRFFQLYVYK-- 133 (367)
Q Consensus 63 t~i~g~~l~~Pi~iAPm~~~~l~~~~~e~~~a~aa~~~G~~~~vs~~~~~~~e~i-------~~~~~~~~~~QLy~~~-- 133 (367)
+++|+ ++.||+.+||++.+ +..++.++.+.|...++......+.+++ .+....|+.++++...
T Consensus 9 ~~~l~--~~~Pii~apM~gvs------~~~la~av~~aGglG~i~~~~~~s~~~l~~~i~~i~~~~~~p~~v~l~v~~~~ 80 (328)
T 2gjl_A 9 TETFG--VEHPIMQGGMQWVG------RAEMAAAVANAGGLATLSALTQPSPEALAAEIARCRELTDRPFGVNLTLLPTQ 80 (328)
T ss_dssp HHHHT--CSSSEEECCCTTTC------SHHHHHHHHHTTSBCEEETTTSSSHHHHHHHHHHHHHHCSSCCEEEEEECCCS
T ss_pred HHHhC--CCCCEEECCCCCCC------cHHHHHHHHHCCCeEEeCCCCCCCHHHHHHHHHHHHHhcCCCeEEEEeccccc
Confidence 34555 67899999997643 5689999999996555543222224432 2223357788888641
Q ss_pred -CHHHHHHHHHHHHHcCCcEEEEecCCCCCCchhHHhhhhcCCCCccccccccccccCccccccchhhHHHhhhccCccc
Q 017718 134 -DRNVVAQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLTLKNFQGLDLGKMDEANDSGLAAYVAGQIDRSL 212 (367)
Q Consensus 134 -d~~~~~~~l~ra~~~G~~ai~itvd~p~~g~r~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~ 212 (367)
+++ ..+.++.+.+.|++.+.++.++|. +
T Consensus 81 ~~~~-~~~~~~~~~~~g~d~V~~~~g~p~------~-------------------------------------------- 109 (328)
T 2gjl_A 81 KPVP-YAEYRAAIIEAGIRVVETAGNDPG------E-------------------------------------------- 109 (328)
T ss_dssp SCCC-HHHHHHHHHHTTCCEEEEEESCCH------H--------------------------------------------
T ss_pred cCcc-HHHHHHHHHhcCCCEEEEcCCCcH------H--------------------------------------------
Confidence 222 456788888999999988776541 0
Q ss_pred cHHHHHhhcCCCEEEEecCCHHHHHHHHHcCCcEEEEcCC--CCCCCCCccchHHHHHHHHHHhcCCCcEEEecCCCCHH
Q 017718 213 SWKWLQTITKLPILVKGVLTAEDARIAVQAGAAGIIVSNH--GARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGT 290 (367)
Q Consensus 213 ~~~~l~~~~~~Pv~vK~v~~~~~a~~~~~~G~d~i~vs~~--gg~~~~~~~~~~~~l~~i~~~~~~~~~via~GGI~~~~ 290 (367)
..+++++. ++|++.+ +.+.++++.+.++|+|+|++++. ||+......++++.++++++.+ ++|||++|||++++
T Consensus 110 ~~~~l~~~-gi~vi~~-v~t~~~a~~~~~~GaD~i~v~g~~~GG~~G~~~~~~~~~l~~v~~~~--~iPviaaGGI~~~~ 185 (328)
T 2gjl_A 110 HIAEFRRH-GVKVIHK-CTAVRHALKAERLGVDAVSIDGFECAGHPGEDDIPGLVLLPAAANRL--RVPIIASGGFADGR 185 (328)
T ss_dssp HHHHHHHT-TCEEEEE-ESSHHHHHHHHHTTCSEEEEECTTCSBCCCSSCCCHHHHHHHHHTTC--CSCEEEESSCCSHH
T ss_pred HHHHHHHc-CCCEEee-CCCHHHHHHHHHcCCCEEEEECCCCCcCCCCccccHHHHHHHHHHhc--CCCEEEECCCCCHH
Confidence 01245543 7888754 67899999999999999999763 4432212357888999988765 79999999999999
Q ss_pred HHHHHHHcCCCEEEechHHHHHhhccChH
Q 017718 291 DVFKALALGASGIFIGRPVVYSLAAEGEK 319 (367)
Q Consensus 291 dv~kal~lGAd~V~ig~~~l~~l~~~G~~ 319 (367)
|+.+++++|||+|++||+|+....+.+.+
T Consensus 186 ~v~~al~~GAdgV~vGs~~~~~~e~~~~~ 214 (328)
T 2gjl_A 186 GLVAALALGADAINMGTRFLATRECPIHP 214 (328)
T ss_dssp HHHHHHHHTCSEEEESHHHHTSSSSCSCH
T ss_pred HHHHHHHcCCCEEEECHHHHcCccccccH
Confidence 99999999999999999998765444443
|
| >3bo9_A Putative nitroalkan dioxygenase; TM0800, structural genomics center for structural genomics, JCSG, protein structure INI PSI-2; HET: MSE 2PE; 2.71A {Thermotoga maritima MSB8} | Back alignment and structure |
|---|
Probab=99.71 E-value=4.5e-16 Score=150.40 Aligned_cols=187 Identities=20% Similarity=0.265 Sum_probs=136.5
Q ss_pred eeeccceEeCcccchhccCChhhHHHHHHHHHcCCceeecCCCCCCHHHHH-------hhCCCceEEEEeecCCHHHHHH
Q 017718 68 FKISMPIMIAPTAMQKMAHPEGEYATARAASAAGTIMTLSSWSTSSVEEVA-------STGPGIRFFQLYVYKDRNVVAQ 140 (367)
Q Consensus 68 ~~l~~Pi~iAPm~~~~l~~~~~e~~~a~aa~~~G~~~~vs~~~~~~~e~i~-------~~~~~~~~~QLy~~~d~~~~~~ 140 (367)
+.++.||+.+||++.+ +..++.++.+.|...+++.. ..+.+++. +....|+.++++.. ++. ..+
T Consensus 23 l~~~~Pii~apM~gvs------~~~la~av~~aGglG~i~~~-~~~~~~l~~~i~~i~~~~~~p~gVnl~~~-~~~-~~~ 93 (326)
T 3bo9_A 23 LEIEHPILMGGMAWAG------TPTLAAAVSEAGGLGIIGSG-AMKPDDLRKAISELRQKTDKPFGVNIILV-SPW-ADD 93 (326)
T ss_dssp HTCSSSEEECCCTTTS------CHHHHHHHHHTTSBEEEECT-TCCHHHHHHHHHHHHTTCSSCEEEEEETT-STT-HHH
T ss_pred cCCCCCEEECCCCCCC------CHHHHHHHHhCCCcEEeCCC-CCCHHHHHHHHHHHHHhcCCCEEEEEecc-CCC-HHH
Confidence 3478899999998643 56899999999975555322 23444322 22224677887642 222 356
Q ss_pred HHHHHHHcCCcEEEEecCCCCCCchhHHhhhhcCCCCccccccccccccCccccccchhhHHHhhhccCccccHHHHHhh
Q 017718 141 LVRRAERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLTLKNFQGLDLGKMDEANDSGLAAYVAGQIDRSLSWKWLQTI 220 (367)
Q Consensus 141 ~l~ra~~~G~~ai~itvd~p~~g~r~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~l~~~ 220 (367)
.++.+.+.|++.+.++.++|.. ..+++++
T Consensus 94 ~~~~~~~~g~d~V~l~~g~p~~--------------------------------------------------~~~~l~~- 122 (326)
T 3bo9_A 94 LVKVCIEEKVPVVTFGAGNPTK--------------------------------------------------YIRELKE- 122 (326)
T ss_dssp HHHHHHHTTCSEEEEESSCCHH--------------------------------------------------HHHHHHH-
T ss_pred HHHHHHHCCCCEEEECCCCcHH--------------------------------------------------HHHHHHH-
Confidence 7788888999999887765410 0124444
Q ss_pred cCCCEEEEecCCHHHHHHHHHcCCcEEEEcC--CCCCCCCCccchHHHHHHHHHHhcCCCcEEEecCCCCHHHHHHHHHc
Q 017718 221 TKLPILVKGVLTAEDARIAVQAGAAGIIVSN--HGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALAL 298 (367)
Q Consensus 221 ~~~Pv~vK~v~~~~~a~~~~~~G~d~i~vs~--~gg~~~~~~~~~~~~l~~i~~~~~~~~~via~GGI~~~~dv~kal~l 298 (367)
.++|+++ .+.+.++++.+.++|+|+|++++ +||++ +..++++.++++++.+ ++|||++|||++++|+.+++++
T Consensus 123 ~g~~v~~-~v~s~~~a~~a~~~GaD~i~v~g~~~GG~~--G~~~~~~ll~~i~~~~--~iPviaaGGI~~~~dv~~al~~ 197 (326)
T 3bo9_A 123 NGTKVIP-VVASDSLARMVERAGADAVIAEGMESGGHI--GEVTTFVLVNKVSRSV--NIPVIAAGGIADGRGMAAAFAL 197 (326)
T ss_dssp TTCEEEE-EESSHHHHHHHHHTTCSCEEEECTTSSEEC--CSSCHHHHHHHHHHHC--SSCEEEESSCCSHHHHHHHHHH
T ss_pred cCCcEEE-EcCCHHHHHHHHHcCCCEEEEECCCCCccC--CCccHHHHHHHHHHHc--CCCEEEECCCCCHHHHHHHHHh
Confidence 4677765 46789999999999999999987 45543 2357889999998877 7999999999999999999999
Q ss_pred CCCEEEechHHHHHhhccChH
Q 017718 299 GASGIFIGRPVVYSLAAEGEK 319 (367)
Q Consensus 299 GAd~V~ig~~~l~~l~~~G~~ 319 (367)
||++|++||+|+....+.+.+
T Consensus 198 GA~gV~vGs~~~~~~e~~~~~ 218 (326)
T 3bo9_A 198 GAEAVQMGTRFVASVESDVHP 218 (326)
T ss_dssp TCSEEEESHHHHTBSSCCSCH
T ss_pred CCCEEEechHHHcCccccccH
Confidence 999999999998765444333
|
| >3bw2_A 2-nitropropane dioxygenase; TIM barrel, oxidoreductase; HET: FMN; 2.10A {Streptomyces ansochromogenes} PDB: 3bw4_A* 3bw3_A* | Back alignment and structure |
|---|
Probab=99.63 E-value=2.8e-14 Score=140.05 Aligned_cols=94 Identities=30% Similarity=0.392 Sum_probs=75.1
Q ss_pred HHHhhcCCCEEEEecCCHHHHHHHHHcCCcEEEEcCC--CCC---CCCCc------cchHHHHHHHHHHhcCCCcEEEec
Q 017718 216 WLQTITKLPILVKGVLTAEDARIAVQAGAAGIIVSNH--GAR---QLDYV------PATIMALEEVVKATQGRIPVFLDG 284 (367)
Q Consensus 216 ~l~~~~~~Pv~vK~v~~~~~a~~~~~~G~d~i~vs~~--gg~---~~~~~------~~~~~~l~~i~~~~~~~~~via~G 284 (367)
++++ .++||+++ +.+.++++.+.++|+|+|++++. ||+ ..... ...++.++++++.+ ++|||++|
T Consensus 140 ~~~~-~g~~v~~~-v~t~~~a~~a~~~GaD~i~v~g~~~GGh~g~~~~~~~~~~~~~~~~~~l~~i~~~~--~iPViaaG 215 (369)
T 3bw2_A 140 RLRR-AGTLTLVT-ATTPEEARAVEAAGADAVIAQGVEAGGHQGTHRDSSEDDGAGIGLLSLLAQVREAV--DIPVVAAG 215 (369)
T ss_dssp HHHH-TTCEEEEE-ESSHHHHHHHHHTTCSEEEEECTTCSEECCCSSCCGGGTTCCCCHHHHHHHHHHHC--SSCEEEES
T ss_pred HHHH-CCCeEEEE-CCCHHHHHHHHHcCCCEEEEeCCCcCCcCCCcccccccccccccHHHHHHHHHHhc--CceEEEEC
Confidence 5554 47787664 57899999999999999999763 332 21111 23588899988776 89999999
Q ss_pred CCCCHHHHHHHHHcCCCEEEechHHHHHh
Q 017718 285 GVRRGTDVFKALALGASGIFIGRPVVYSL 313 (367)
Q Consensus 285 GI~~~~dv~kal~lGAd~V~ig~~~l~~l 313 (367)
||.+++++.+++++|||+|++||+|+...
T Consensus 216 GI~~~~~~~~~l~~GAd~V~vGs~~~~~~ 244 (369)
T 3bw2_A 216 GIMRGGQIAAVLAAGADAAQLGTAFLATD 244 (369)
T ss_dssp SCCSHHHHHHHHHTTCSEEEESHHHHTST
T ss_pred CCCCHHHHHHHHHcCCCEEEEChHHhCCc
Confidence 99999999999999999999999998643
|
| >1z41_A YQJM, probable NADH-dependent flavin oxidoreductase YQJ; FMN, beta-alpha-barrel; HET: FMN; 1.30A {Bacillus subtilis} SCOP: c.1.4.1 PDB: 1z42_A* 1z44_A* 1z48_A* | Back alignment and structure |
|---|
Probab=99.59 E-value=1.5e-13 Score=133.41 Aligned_cols=224 Identities=18% Similarity=0.174 Sum_probs=141.1
Q ss_pred ceeEcCeeeccceEeCcccchhccCChh---hH--HHHHHHHHcCCceeecCCCCC--------------CHH------H
Q 017718 62 NTTVLGFKISMPIMIAPTAMQKMAHPEG---EY--ATARAASAAGTIMTLSSWSTS--------------SVE------E 116 (367)
Q Consensus 62 st~i~g~~l~~Pi~iAPm~~~~l~~~~~---e~--~~a~aa~~~G~~~~vs~~~~~--------------~~e------~ 116 (367)
..+|.+.+++++|++|||+...-..+++ +. ..-+.-++-|+.++++++... +.+ +
T Consensus 8 p~~ig~~~l~NRiv~aPm~~~~~~~~~g~~~~~~~~~y~~rA~gG~gliite~~~v~~~g~~~~~~~~i~~d~~~~~~~~ 87 (338)
T 1z41_A 8 PITIKDMTLKNRIVMSPMCMYSSHEKDGKLTPFHMAHYISRAIGQVGLIIVEASAVNPQGRITDQDLGIWSDEHIEGFAK 87 (338)
T ss_dssp CEEETTEEESSSEEECCCCCCCCTTSSSCCCHHHHHHHHHHHHTTCSEEEEEEEESSGGGCSSTTSCBCSSTHHHHHHHH
T ss_pred CeeECCEEEcCccEECCcCCCcCCCCCCCCCHHHHHHHHHHHcCCCCEEEeCCeeccccccCCCCCcccCCHHHHHHHHH
Confidence 4788999999999999998654210121 22 222222246788877654211 112 2
Q ss_pred HHh---hCCCceEEEEeecC----------------------CH------------HHHHHHHHHHHHcCCcEEEEecCC
Q 017718 117 VAS---TGPGIRFFQLYVYK----------------------DR------------NVVAQLVRRAERAGFKAIALTVDT 159 (367)
Q Consensus 117 i~~---~~~~~~~~QLy~~~----------------------d~------------~~~~~~l~ra~~~G~~ai~itvd~ 159 (367)
+.+ ....+.++||+-.. .+ +...+.+++++++||++|.||..|
T Consensus 88 ~~~~vh~~g~~i~~QL~h~Gr~~~~~~~~~~pS~~~~~~~~~~p~~mt~~eI~~~i~~~~~aA~~a~~aGfDgVeih~~~ 167 (338)
T 1z41_A 88 LTEQVKEQGSKIGIQLAHAGRKAELEGDIFAPSAIAFDEQSATPVEMSAEKVKETVQEFKQAAARAKEAGFDVIEIHAAH 167 (338)
T ss_dssp HHHHHHHTTCEEEEEEECCGGGCCCSSCCEESSSCCSSTTSCCCEECCHHHHHHHHHHHHHHHHHHHHTTCSEEEEEECT
T ss_pred HHHHHHhcCCEEEEEecCCCcccCCCCCCcCCCCCCCCCCCCCCccCCHHHHHHHHHHHHHHHHHHHHcCCCEEEecccc
Confidence 221 22357899997421 22 345566788889999999999987
Q ss_pred CCCCchhHHhhhhcCCCCccccccccccccCccccccchhhHHHhhhccCcccc---HHHHHhhcCCCEEEEecC-----
Q 017718 160 PRLGRREADIKNRFTLPPFLTLKNFQGLDLGKMDEANDSGLAAYVAGQIDRSLS---WKWLQTITKLPILVKGVL----- 231 (367)
Q Consensus 160 p~~g~r~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~---~~~l~~~~~~Pv~vK~v~----- 231 (367)
.. +-+.|--|.. +.+. + +-.++ + .. ...+. .+.+|+.++.||.+|+..
T Consensus 168 gy-------Ll~qFlsp~~-n~R~-d--------~yGGs-l----en--r~r~~~eiv~avr~~v~~pv~vris~~~~~~ 223 (338)
T 1z41_A 168 GY-------LIHEFLSPLS-NHRT-D--------EYGGS-P----EN--RYRFLREIIDEVKQVWDGPLFVRVSASDYTD 223 (338)
T ss_dssp TS-------HHHHHHCTTT-CCCC-S--------TTSSS-H----HH--HHHHHHHHHHHHHHHCCSCEEEEEECCCCST
T ss_pred ch-------HHHHccCCCc-CCcC-c--------ccCcc-h----hh--hHHHHHHHHHHHHHHcCCcEEEEecCcccCC
Confidence 43 2222211110 0000 0 00011 1 00 11221 237888889999999864
Q ss_pred ---CH----HHHHHHHHcCCcEEEEcCCCCC-C-CCCcc-chHHHHHHHHHHhcCCCcEEEecCCCCHHHHHHHHHcC-C
Q 017718 232 ---TA----EDARIAVQAGAAGIIVSNHGAR-Q-LDYVP-ATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALG-A 300 (367)
Q Consensus 232 ---~~----~~a~~~~~~G~d~i~vs~~gg~-~-~~~~~-~~~~~l~~i~~~~~~~~~via~GGI~~~~dv~kal~lG-A 300 (367)
+. +.++.+.++|+|+|.+++.... + ...++ ..++.+.++++.+ ++|||++|||++++++.++|..| |
T Consensus 224 ~g~~~~~~~~~a~~l~~~Gvd~i~v~~~~~~~~~~~~~~~~~~~~~~~ir~~~--~iPVi~~Ggi~s~~~a~~~l~~G~a 301 (338)
T 1z41_A 224 KGLDIADHIGFAKWMKEQGVDLIDCSSGALVHADINVFPGYQVSFAEKIREQA--DMATGAVGMITDGSMAEEILQNGRA 301 (338)
T ss_dssp TSCCHHHHHHHHHHHHHTTCCEEEEECCCSSCCCCCCCTTTTHHHHHHHHHHH--CCEEEECSSCCSHHHHHHHHHTTSC
T ss_pred CCCCHHHHHHHHHHHHHcCCCEEEEecCccccCCCCCCccchHHHHHHHHHHC--CCCEEEECCCCCHHHHHHHHHcCCc
Confidence 23 3478899999999999763211 1 11222 2467788888887 89999999999999999999998 9
Q ss_pred CEEEechHHHH
Q 017718 301 SGIFIGRPVVY 311 (367)
Q Consensus 301 d~V~ig~~~l~ 311 (367)
|+|++||+++.
T Consensus 302 D~V~iGR~~i~ 312 (338)
T 1z41_A 302 DLIFIGRELLR 312 (338)
T ss_dssp SEEEECHHHHH
T ss_pred eEEeecHHHHh
Confidence 99999999985
|
| >2gou_A Oxidoreductase, FMN-binding; OLD yeallow enzyme, flavoenzyme; HET: BOG FMN PE4; 1.40A {Shewanella oneidensis} PDB: 2gq8_A* 2gq9_A* 2gqa_A* | Back alignment and structure |
|---|
Probab=99.48 E-value=1.2e-12 Score=128.27 Aligned_cols=220 Identities=17% Similarity=0.136 Sum_probs=141.4
Q ss_pred ceeEcCeeeccceEeCcccchhccCCh---hhHHHHHHHHHcCCceeecCCCCC--------------CHHH------HH
Q 017718 62 NTTVLGFKISMPIMIAPTAMQKMAHPE---GEYATARAASAAGTIMTLSSWSTS--------------SVEE------VA 118 (367)
Q Consensus 62 st~i~g~~l~~Pi~iAPm~~~~l~~~~---~e~~~a~aa~~~G~~~~vs~~~~~--------------~~e~------i~ 118 (367)
..+|.+.++++.|++|||+...-..++ .+..+..-++++++.++++++... +.+. +.
T Consensus 8 P~~ig~~~l~NRiv~aPm~~~~a~~~~g~~t~~~~~~y~~rA~~GLiite~~~v~~~g~~~~~~~gi~~d~~i~~~~~l~ 87 (365)
T 2gou_A 8 PITLGALTLKNRIVMPPMTRSRASQPGDVANHMMAIYYAQRASAGLIVSEGTQISPTAKGYAWTPGIYTPEQIAGWRIVT 87 (365)
T ss_dssp CEEETTEEESSSEEECCCCCCCCBTTTTBCCHHHHHHHHTTTTSSEEEEEEEESSGGGCCSTTCCBSSSHHHHHHHHHHH
T ss_pred CeeECCEEEcCceEECCCCCCcccCCCCCCCHHHHHHHHHHhcCCEEEECceeecccccCCCCCCccCCHHHHHHHHHHH
Confidence 477899999999999999865421122 256677777777888877654211 2222 22
Q ss_pred h---hCCCceEEEEeec-----------------------------------------CCH------------HHHHHHH
Q 017718 119 S---TGPGIRFFQLYVY-----------------------------------------KDR------------NVVAQLV 142 (367)
Q Consensus 119 ~---~~~~~~~~QLy~~-----------------------------------------~d~------------~~~~~~l 142 (367)
+ ....+.++||+-. ..+ +...+.+
T Consensus 88 ~~vh~~g~~i~~QL~H~Gr~~~~~~~~g~~~~apS~i~~~~~~~~~~~~~g~~~~~~~~~p~~mt~~eI~~~i~~f~~aA 167 (365)
T 2gou_A 88 EAVHAKGCAIFAQLWHVGRVTHPDNIDGQQPISSSTLKAENVKVFVDNGSDEPGFVDVAVPRAMTKADIAQVIADYRQAA 167 (365)
T ss_dssp HHHHHHSCEEEEEEECCTTSSCGGGTTTCCCEESSSCCCTTCEEEECCSSSSCEEEECCCCEECCHHHHHHHHHHHHHHH
T ss_pred HHHHhcCCeEEEEeecCCCcccccccCCCCccCCCCccccccccccccccccccccCCCCCCcCCHHHHHHHHHHHHHHH
Confidence 1 1125678999730 112 3556677
Q ss_pred HHHHHcCCcEEEEecCCCCCCchhHHhhhhcCCCCccccccccccccCccccccchhhHHHhhhccCcccc---HHHHHh
Q 017718 143 RRAERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLTLKNFQGLDLGKMDEANDSGLAAYVAGQIDRSLS---WKWLQT 219 (367)
Q Consensus 143 ~ra~~~G~~ai~itvd~p~~g~r~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~---~~~l~~ 219 (367)
++|+++||++|-||..|.. +-+.|--|. .+.+. + +-.++ + .. ...+. .+.+|+
T Consensus 168 ~~a~~aGfDgVeih~a~gY-------Ll~qFlsp~-~N~R~-D--------~yGGs-l----en--r~r~~~eiv~avr~ 223 (365)
T 2gou_A 168 LNAMEAGFDGIELHAANGY-------LINQFIDSE-ANNRS-D--------EYGGS-L----EN--RLRFLDEVVAALVD 223 (365)
T ss_dssp HHHHHTTCSEEEEECCTTS-------HHHHHHSGG-GCCCC-S--------TTSSS-H----HH--HTHHHHHHHHHHHH
T ss_pred HHHHHcCCCEEEEecccch-------hHhhccCCC-ccCcC-c--------ccCcc-h----hh--hHHHHHHHHHHHHH
Confidence 8889999999999998743 112221111 00000 0 00011 1 00 12222 237888
Q ss_pred hcCC-CEEEEecCC-----------HHH----HHHHHHcCCcEEEEcCCCCCCCCCcc-chHHHHHHHHHHhcCCCcEEE
Q 017718 220 ITKL-PILVKGVLT-----------AED----ARIAVQAGAAGIIVSNHGARQLDYVP-ATIMALEEVVKATQGRIPVFL 282 (367)
Q Consensus 220 ~~~~-Pv~vK~v~~-----------~~~----a~~~~~~G~d~i~vs~~gg~~~~~~~-~~~~~l~~i~~~~~~~~~via 282 (367)
.++. ||.+|+... .++ ++.+.++|+|+|.+++.. .+..+ ..++.+.++++.+ ++|||+
T Consensus 224 ~vg~~pv~vris~~~~~~~~~~~~~~~~~~~~a~~l~~~G~d~i~v~~~~---~~~~~~~~~~~~~~i~~~~--~iPvi~ 298 (365)
T 2gou_A 224 AIGAERVGVRLAPLTTLNGTVDADPILTYTAAAALLNKHRIVYLHIAEVD---WDDAPDTPVSFKRALREAY--QGVLIY 298 (365)
T ss_dssp HHCGGGEEEEECSSCCTTSCCCSSHHHHHHHHHHHHHHTTCSEEEEECCB---TTBCCCCCHHHHHHHHHHC--CSEEEE
T ss_pred HcCCCcEEEEEccccccCCCCCCCCHHHHHHHHHHHHHcCCCEEEEeCCC---cCCCCCccHHHHHHHHHHC--CCcEEE
Confidence 7743 999999852 233 788999999999997631 11111 1356778888877 799999
Q ss_pred ecCCCCHHHHHHHHHcC-CCEEEechHHHH
Q 017718 283 DGGVRRGTDVFKALALG-ASGIFIGRPVVY 311 (367)
Q Consensus 283 ~GGI~~~~dv~kal~lG-Ad~V~ig~~~l~ 311 (367)
+||| +++++.++|+.| ||+|++||+++.
T Consensus 299 ~Ggi-~~~~a~~~l~~g~aD~V~igR~~i~ 327 (365)
T 2gou_A 299 AGRY-NAEKAEQAINDGLADMIGFGRPFIA 327 (365)
T ss_dssp ESSC-CHHHHHHHHHTTSCSEEECCHHHHH
T ss_pred eCCC-CHHHHHHHHHCCCcceehhcHHHHh
Confidence 9999 999999999998 999999999985
|
| >2r14_A Morphinone reductase; H-tunnelling, flavoprotein, NADH, hydride transfer, oxidoreductase; HET: FMN TXD; 1.40A {Pseudomonas putida} PDB: 3gx9_A* 1gwj_A* | Back alignment and structure |
|---|
Probab=99.46 E-value=2.5e-12 Score=126.42 Aligned_cols=221 Identities=14% Similarity=0.124 Sum_probs=140.1
Q ss_pred cceeEcCeeeccceEeCcccchhccCCh---hhHHHHHHHHHcCCceeecCCCCC--------------CHHH------H
Q 017718 61 MNTTVLGFKISMPIMIAPTAMQKMAHPE---GEYATARAASAAGTIMTLSSWSTS--------------SVEE------V 117 (367)
Q Consensus 61 ~st~i~g~~l~~Pi~iAPm~~~~l~~~~---~e~~~a~aa~~~G~~~~vs~~~~~--------------~~e~------i 117 (367)
...+|.+.++++.|++|||+...- ++ .+..+..-++++|+.++++++... +.+. +
T Consensus 13 ~P~~ig~~~l~NRiv~aPm~~~~a--~~g~pt~~~~~~y~~rA~~GLiitE~~~v~~~g~~~~~~~gi~~d~~i~~~k~l 90 (377)
T 2r14_A 13 TPLQLGSLSLPNRVIMAPLTRSRT--PDSVPGRLQQIYYGQRASAGLIISEATNISPTARGYVYTPGIWTDAQEAGWKGV 90 (377)
T ss_dssp SCEEETTEEESCSEEECCCCCCCC--TTSCCCHHHHHHHHHTTTSSCEEEEEEESSGGGCCBTTCCBSSSHHHHHHHHHH
T ss_pred CCeeECCEEecCCeEECCCcCCcC--CCCCCCHHHHHHHHHHhcCCEEEEcceeeccccccCCCCcccCCHHHHHHHHHH
Confidence 347889999999999999986432 22 356777777777877777654211 2222 2
Q ss_pred Hh---hCCCceEEEEeec------------------------------------------CCH------------HHHHH
Q 017718 118 AS---TGPGIRFFQLYVY------------------------------------------KDR------------NVVAQ 140 (367)
Q Consensus 118 ~~---~~~~~~~~QLy~~------------------------------------------~d~------------~~~~~ 140 (367)
.+ ......++||+-. ..+ +...+
T Consensus 91 ~~avh~~G~~i~~QL~H~Gr~~~~~~~~~~~~~~apS~i~~~~~~~~~~~~~~~~~~~~~~~p~~mt~~eI~~~i~~f~~ 170 (377)
T 2r14_A 91 VEAVHAKGGRIALQLWHVGRVSHELVQPDGQQPVAPSALKAEGAECFVEFEDGTAGLHPTSTPRALETDEIPGIVEDYRQ 170 (377)
T ss_dssp HHHHHHTTCCEEEEEECCTTSCCTTTSGGGCCCEESSSCCCTTCEEEEECTTSCEEEEECCCCEECCGGGHHHHHHHHHH
T ss_pred HHHHhhcCCeEEEEccCCccccccccccCCCcccCCCcccccccccccccccccccccCCCCCccCCHHHHHHHHHHHHH
Confidence 21 1235788999731 112 35566
Q ss_pred HHHHHHHcCCcEEEEecCCCCCCchhHHhhhhcCCCCccccccccccccCccccccchhhHHHhhhccCcccc---HHHH
Q 017718 141 LVRRAERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLTLKNFQGLDLGKMDEANDSGLAAYVAGQIDRSLS---WKWL 217 (367)
Q Consensus 141 ~l~ra~~~G~~ai~itvd~p~~g~r~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~---~~~l 217 (367)
.+++|+++||++|-||..|-. +-+.|--|. .+.+. + +-.++ + .. ...+. .+.+
T Consensus 171 aA~~a~~aGfDgVEIh~a~GY-------Ll~QFlsp~-~N~R~-D--------~yGGs-l----en--R~r~~~eiv~aV 226 (377)
T 2r14_A 171 AAQRAKRAGFDMVEVHAANAC-------LPNQFLATG-TNRRT-D--------QYGGS-I----EN--RARFPLEVVDAV 226 (377)
T ss_dssp HHHHHHHHTCSEEEEEECTTC-------HHHHHHSTT-TCCCC-S--------TTSSS-H----HH--HHHHHHHHHHHH
T ss_pred HHHHHHHcCCCEEEEcCcccc-------hHHhccCCc-cccCC-C--------ccCcc-h----hh--chHHHHHHHHHH
Confidence 778889999999999998733 222221111 00000 0 00011 1 00 11222 2378
Q ss_pred HhhcC-CCEEEEecCC-----------HH----HHHHHHHcCCcEEEEcCCCCCCCCCccchHHHHHHHHHHhcCCCcEE
Q 017718 218 QTITK-LPILVKGVLT-----------AE----DARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVF 281 (367)
Q Consensus 218 ~~~~~-~Pv~vK~v~~-----------~~----~a~~~~~~G~d~i~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~~~vi 281 (367)
|+.++ .||.+|+... .+ .++.+.++|+|+|.+++....+...+ ..++.+.++++.+ ++|||
T Consensus 227 r~avg~~~v~vrls~~~~~~~~~~~~~~~~~~~la~~le~~Gvd~i~v~~~~~~~~~~~-~~~~~~~~ik~~~--~iPvi 303 (377)
T 2r14_A 227 AEVFGPERVGIRLTPFLELFGLTDDEPEAMAFYLAGELDRRGLAYLHFNEPDWIGGDIT-YPEGFREQMRQRF--KGGLI 303 (377)
T ss_dssp HHHHCGGGEEEEECTTCCCTTCCCSCHHHHHHHHHHHHHHTTCSEEEEECCC------C-CCTTHHHHHHHHC--CSEEE
T ss_pred HHHcCCCcEEEEeccccccCCCCCCCCHHHHHHHHHHHHHcCCCEEEEeCCcccCCCCc-chHHHHHHHHHHC--CCCEE
Confidence 88875 3999998632 23 37889999999999975221111111 1456677888877 79999
Q ss_pred EecCCCCHHHHHHHHHcC-CCEEEechHHHH
Q 017718 282 LDGGVRRGTDVFKALALG-ASGIFIGRPVVY 311 (367)
Q Consensus 282 a~GGI~~~~dv~kal~lG-Ad~V~ig~~~l~ 311 (367)
++||| +++++.++|+.| ||+|++||+++.
T Consensus 304 ~~Ggi-~~~~a~~~l~~g~aD~V~igR~~l~ 333 (377)
T 2r14_A 304 YCGNY-DAGRAQARLDDNTADAVAFGRPFIA 333 (377)
T ss_dssp EESSC-CHHHHHHHHHTTSCSEEEESHHHHH
T ss_pred EECCC-CHHHHHHHHHCCCceEEeecHHHHh
Confidence 99999 699999999998 999999999985
|
| >1vyr_A Pentaerythritol tetranitrate reductase; oxidoreductase, flavoenzyme, explosive degradation, steroid binding; HET: FMN TNF; 0.9A {Enterobacter cloacae} SCOP: c.1.4.1 PDB: 1gvq_A* 1gvr_A* 1gvs_A* 1h50_A* 1h51_A* 1h60_A* 1h61_A* 1h62_A* 1h63_A* 1gvo_A* 2aba_A* 3f03_K* 3kft_A* 3p7y_A* 3p80_A* 3p81_A* 3p62_A* 3p8i_A* 2abb_A* 3p67_A* ... | Back alignment and structure |
|---|
Probab=99.46 E-value=6.5e-12 Score=122.94 Aligned_cols=221 Identities=15% Similarity=0.115 Sum_probs=142.4
Q ss_pred ceeEcCeeeccceEeCcccchhccCCh---hhHHHHHHHHHcCCceeecCCCCC--------------CHHH------HH
Q 017718 62 NTTVLGFKISMPIMIAPTAMQKMAHPE---GEYATARAASAAGTIMTLSSWSTS--------------SVEE------VA 118 (367)
Q Consensus 62 st~i~g~~l~~Pi~iAPm~~~~l~~~~---~e~~~a~aa~~~G~~~~vs~~~~~--------------~~e~------i~ 118 (367)
..+|.+.++++.|++|||+...-..++ .+..+..-++++|+.++++++... +.+. +.
T Consensus 8 P~~ig~~~l~NRiv~aPm~~~~a~~~~g~~t~~~~~~y~~rAg~GLiite~~~v~~~g~~~~~~~gi~~d~~i~~~~~l~ 87 (364)
T 1vyr_A 8 PLKVGAVTAPNRVFMAPLTRLRSIEPGDIPTPLMGEYYRQRASAGLIISEATQISAQAKGYAGAPGLHSPEQIAAWKKIT 87 (364)
T ss_dssp CEEETTEEESSSEEECCCCCCCCBTTTTBCCHHHHHHHHHTTTSSEEEEEEEESSSTTCCSTTCCBSSSHHHHHHHHHHH
T ss_pred CeeECCEEECCccEECCCCCCcccCCCCCCCHHHHHHHHHHhcCCEEEEccccccccccCCCCCcccCCHHHHHHHHHHH
Confidence 478899999999999999865321222 366777778888888887754211 2222 22
Q ss_pred h---hCCCceEEEEeec-----------------------------------------CCH------------HHHHHHH
Q 017718 119 S---TGPGIRFFQLYVY-----------------------------------------KDR------------NVVAQLV 142 (367)
Q Consensus 119 ~---~~~~~~~~QLy~~-----------------------------------------~d~------------~~~~~~l 142 (367)
+ ......++||+-. ..+ +...+.+
T Consensus 88 ~~vh~~g~~i~~QL~H~Gr~~~~~~~~~g~~~~apS~i~~~~~~~~~~~~g~~~~~~~~~p~~mt~~eI~~~i~~f~~aA 167 (364)
T 1vyr_A 88 AGVHAEDGRIAVQLWHTGRISHSSIQPGGQAPVSASALNANTRTSLRDENGNAIRVDTTTPRALELDEIPGIVNDFRQAV 167 (364)
T ss_dssp HHHHHTTCCEEEEEECCTTSSCGGGSGGGCCCEESSSCCCCSEEEEECTTSCEEEEECCCCEECCGGGHHHHHHHHHHHH
T ss_pred HHHHhcCCeEEEEeccCCcccCcccccCCCccccCCCcccccccccccccccccccCCCCCCcCCHHHHHHHHHHHHHHH
Confidence 1 2235788999720 122 3456677
Q ss_pred HHHHHcCCcEEEEecCCCCCCchhHHhhhhcCCCCccccccccccccCccccccchhhHHHhhhccCcccc---HHHHHh
Q 017718 143 RRAERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLTLKNFQGLDLGKMDEANDSGLAAYVAGQIDRSLS---WKWLQT 219 (367)
Q Consensus 143 ~ra~~~G~~ai~itvd~p~~g~r~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~---~~~l~~ 219 (367)
++|+++||++|-||..|.. +-+.|--|. .+.+. + +-.++ + .. ...+. .+.+|+
T Consensus 168 ~~a~~aGfDgVeih~a~Gy-------Ll~qFlsp~-~N~R~-D--------~yGGs-l----en--r~r~~~eiv~avr~ 223 (364)
T 1vyr_A 168 ANAREAGFDLVELHSAHGY-------LLHQFLSPS-SNQRT-D--------QYGGS-V----EN--RARLVLEVVDAVCN 223 (364)
T ss_dssp HHHHHTTCSEEEEEECTTS-------HHHHHHCTT-TCCCC-S--------TTSSS-H----HH--HTHHHHHHHHHHHH
T ss_pred HHHHHcCCCEEEEcCccch-------HHHhccCCc-ccccC-C--------cCCcc-h----hc--ChhhHHHHHHHHHH
Confidence 8889999999999998743 112221111 00000 0 00011 1 00 12222 237888
Q ss_pred hcC-CCEEEEecCC------------HHH----HHHHHHcCCcEEEEcCCCCCCCCCccchHHHHHHHHHHhcCCCcEEE
Q 017718 220 ITK-LPILVKGVLT------------AED----ARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFL 282 (367)
Q Consensus 220 ~~~-~Pv~vK~v~~------------~~~----a~~~~~~G~d~i~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~~~via 282 (367)
.++ .||.+|+... .++ ++.+.++|+|+|.+++.+-.+.. ...++.+.++++.+ ++|||+
T Consensus 224 ~vg~~~v~vrls~~~~~~~~~~~~~~~~~~~~~a~~l~~~G~d~i~v~~~~~~~~~--~~~~~~~~~v~~~~--~iPvi~ 299 (364)
T 1vyr_A 224 EWSADRIGIRVSPIGTFQNVDNGPNEEADALYLIEELAKRGIAYLHMSETDLAGGK--PYSEAFRQKVRERF--HGVIIG 299 (364)
T ss_dssp HSCGGGEEEEECCSSCBTTBCCCTTHHHHHHHHHHHHHHTTCSEEEEECCBTTBCC--CCCHHHHHHHHHHC--CSEEEE
T ss_pred hcCCCcEEEEEccccccccccCCCCCHHHHHHHHHHHHHhCCCEEEEecCcccCCC--cccHHHHHHHHHHC--CCCEEE
Confidence 874 3999999742 223 78899999999999753211111 12456778888877 799999
Q ss_pred ecCCCCHHHHHHHHHcC-CCEEEechHHHH
Q 017718 283 DGGVRRGTDVFKALALG-ASGIFIGRPVVY 311 (367)
Q Consensus 283 ~GGI~~~~dv~kal~lG-Ad~V~ig~~~l~ 311 (367)
+||| +++++.++|+.| ||+|++||+++.
T Consensus 300 ~Ggi-t~~~a~~~l~~g~aD~V~~gR~~l~ 328 (364)
T 1vyr_A 300 AGAY-TAEKAEDLIGKGLIDAVAFGRDYIA 328 (364)
T ss_dssp ESSC-CHHHHHHHHHTTSCSEEEESHHHHH
T ss_pred ECCc-CHHHHHHHHHCCCccEEEECHHHHh
Confidence 9999 999999999998 999999999985
|
| >3gr7_A NADPH dehydrogenase; flavin, FMN, beta-alpha-barrel, oxidoreductase, flavoprotein; HET: FMN; 2.30A {Geobacillus kaustophilus} PDB: 3gr8_A* | Back alignment and structure |
|---|
Probab=99.45 E-value=1e-11 Score=120.52 Aligned_cols=225 Identities=18% Similarity=0.163 Sum_probs=137.4
Q ss_pred cceeEcCeeeccceEeCcccchhcc----CC-hhhHHHHHHHHHcCCceeecCCCCC--------------CHH------
Q 017718 61 MNTTVLGFKISMPIMIAPTAMQKMA----HP-EGEYATARAASAAGTIMTLSSWSTS--------------SVE------ 115 (367)
Q Consensus 61 ~st~i~g~~l~~Pi~iAPm~~~~l~----~~-~~e~~~a~aa~~~G~~~~vs~~~~~--------------~~e------ 115 (367)
...+|.+.++++-|++|||+...-. .| +-....-+.-++-|+.+++++.... +.+
T Consensus 7 ~p~~ig~~~l~NRiv~apm~~~~~~~~~g~~~~~~~~~y~~rA~gG~Glii~e~~~v~~~g~~~~~~~~i~~d~~i~~~~ 86 (340)
T 3gr7_A 7 SPYTIRGLTLKNRIVMSPMCMYSCDTKDGAVRTWHKIHYPARAVGQVGLIIVEATGVTPQGRISERDLGIWSDDHIAGLR 86 (340)
T ss_dssp SCEEETTEEESSSEEECCCCCCCCTTSSSCCCHHHHHHHHHHHHTTCSEEEEEEEESSGGGCSSTTSEECSSTTHHHHHH
T ss_pred CCEeECCEEEcCceEECCcCCCcccCCCCCCCHHHHHHHHHHhcCCceEEEEcceEecccccCCCCCcccCCHHHHHHHH
Confidence 4578899999999999999743211 12 1122333333345666665432110 111
Q ss_pred HHHh---hCCCceEEEEeecC----------------------C------------HHHHHHHHHHHHHcCCcEEEEecC
Q 017718 116 EVAS---TGPGIRFFQLYVYK----------------------D------------RNVVAQLVRRAERAGFKAIALTVD 158 (367)
Q Consensus 116 ~i~~---~~~~~~~~QLy~~~----------------------d------------~~~~~~~l~ra~~~G~~ai~itvd 158 (367)
++.+ ......++||.-.. . .+...+.+++|+++||++|.||..
T Consensus 87 ~~~~~vh~~G~~i~~QL~H~Gr~~~~~~~~~~pS~~~~~~~~~~p~~mt~~eI~~ii~~f~~aA~~a~~aGfDgVEih~a 166 (340)
T 3gr7_A 87 ELVGLVKEHGAAIGIQLAHAGRKSQVPGEIIAPSAVPFDDSSPTPKEMTKADIEETVQAFQNGARRAKEAGFDVIEIHAA 166 (340)
T ss_dssp HHHHHHHHTTCEEEEEEECCGGGCCSSSCCEESSSCCSSTTSCCCEECCHHHHHHHHHHHHHHHHHHHHHTCSEEEEEEC
T ss_pred HHHHHHHhCCCeEEEEeccCCCccCCCCCccCCCCccccCCCCCCccCCHHHHHHHHHHHHHHHHHHHHcCCCEEEEccc
Confidence 1222 22356788985311 0 122345567788899999999998
Q ss_pred CCCCCchhHHhhhhcCCCCccccccccccccCccccccchhhHHHhhhccCcccc---HHHHHhhcCCCEEEEecCC---
Q 017718 159 TPRLGRREADIKNRFTLPPFLTLKNFQGLDLGKMDEANDSGLAAYVAGQIDRSLS---WKWLQTITKLPILVKGVLT--- 232 (367)
Q Consensus 159 ~p~~g~r~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~---~~~l~~~~~~Pv~vK~v~~--- 232 (367)
|-. +-+.|--|. .+.+. + +-.++ +. . ...+. .+.+|+.++.||.+|+...
T Consensus 167 ~Gy-------Ll~qFlsp~-~N~R~-D--------~yGGs-le---n---R~r~~~eiv~avr~~v~~pv~vRls~~~~~ 222 (340)
T 3gr7_A 167 HGY-------LINEFLSPL-SNRRQ-D--------EYGGS-PE---N---RYRFLGEVIDAVREVWDGPLFVRISASDYH 222 (340)
T ss_dssp TTC-------HHHHHHCTT-TCCCC-S--------TTSSS-HH---H---HHHHHHHHHHHHHHHCCSCEEEEEESCCCS
T ss_pred cch-------HHHHcCCCc-cCcCC-C--------cccCC-HH---H---HHHHHHHHHHHHHHhcCCceEEEecccccc
Confidence 632 122221110 00000 0 00011 10 0 11222 2388888899999999842
Q ss_pred ---------HHHHHHHHHcCCcEEEEcCCCCCC--CCCcc-chHHHHHHHHHHhcCCCcEEEecCCCCHHHHHHHHHcC-
Q 017718 233 ---------AEDARIAVQAGAAGIIVSNHGARQ--LDYVP-ATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALG- 299 (367)
Q Consensus 233 ---------~~~a~~~~~~G~d~i~vs~~gg~~--~~~~~-~~~~~l~~i~~~~~~~~~via~GGI~~~~dv~kal~lG- 299 (367)
.+.++.+.++|+|+|.+++.+-.. ...++ ..++.+.++++.+ ++|||++|||++++++.++|..|
T Consensus 223 ~~g~~~~~~~~la~~L~~~Gvd~i~vs~g~~~~~~~~~~~~~~~~~~~~ik~~~--~iPVi~~GgI~s~e~a~~~L~~G~ 300 (340)
T 3gr7_A 223 PDGLTAKDYVPYAKRMKEQGVDLVDVSSGAIVPARMNVYPGYQVPFAELIRREA--DIPTGAVGLITSGWQAEEILQNGR 300 (340)
T ss_dssp TTSCCGGGHHHHHHHHHHTTCCEEEEECCCSSCCCCCCCTTTTHHHHHHHHHHT--TCCEEEESSCCCHHHHHHHHHTTS
T ss_pred CCCCCHHHHHHHHHHHHHcCCCEEEEecCCccCCCCCCCccccHHHHHHHHHHc--CCcEEeeCCCCCHHHHHHHHHCCC
Confidence 345889999999999997522111 11122 2567788888887 79999999999999999999999
Q ss_pred CCEEEechHHHH
Q 017718 300 ASGIFIGRPVVY 311 (367)
Q Consensus 300 Ad~V~ig~~~l~ 311 (367)
||+|++||+++.
T Consensus 301 aD~V~iGR~~la 312 (340)
T 3gr7_A 301 ADLVFLGRELLR 312 (340)
T ss_dssp CSEEEECHHHHH
T ss_pred eeEEEecHHHHh
Confidence 999999999985
|
| >2hsa_B 12-oxophytodienoate reductase 3; alpha beta 8 barrel, flavoprotein, jasmonate biosynthesis, oxidoreductase; HET: FMN; 1.50A {Solanum lycopersicum} PDB: 2hs6_A* 3hgs_A* 2hs8_A* 3hgo_A* 1q45_A* 2g5w_A* 2q3o_A* | Back alignment and structure |
|---|
Probab=99.39 E-value=4e-11 Score=118.81 Aligned_cols=149 Identities=15% Similarity=0.058 Sum_probs=96.4
Q ss_pred HHHHHHHHHHHHcCCcEEEEecCCCCCCchhHHhhhhcCCCCccccccccccccCccccccchhhHHHhhhccCcccc--
Q 017718 136 NVVAQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLTLKNFQGLDLGKMDEANDSGLAAYVAGQIDRSLS-- 213 (367)
Q Consensus 136 ~~~~~~l~ra~~~G~~ai~itvd~p~~g~r~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~-- 213 (367)
+...+.+++|+++||++|.||..|-. +-+.|--|. .+.+. + +-.++ + .. ...+.
T Consensus 171 ~~f~~AA~~a~~AGfDgVEIh~ahGY-------Ll~QFLsp~-~N~Rt-D--------~yGGs-l----en--R~rf~~E 226 (402)
T 2hsa_B 171 EDYRRSALNAIEAGFDGIEIHGAHGY-------LIDQFLKDG-INDRT-D--------EYGGS-L----AN--RCKFITQ 226 (402)
T ss_dssp HHHHHHHHHHHHTTCSEEEEECCTTS-------HHHHHHCTT-TCCCC-S--------TTSSS-H----HH--HHHHHHH
T ss_pred HHHHHHHHHHHHcCCCEEEECCccch-------HHHhccCCc-cCccC-C--------ccCcC-h----hh--hhHHHHH
Confidence 45567778899999999999998733 222221111 00000 0 00011 1 00 11222
Q ss_pred -HHHHHhhcC-CCEEEEecCC---------------HHHHHHHHHcC------CcEEEEcCCCCCCCCCcc--------c
Q 017718 214 -WKWLQTITK-LPILVKGVLT---------------AEDARIAVQAG------AAGIIVSNHGARQLDYVP--------A 262 (367)
Q Consensus 214 -~~~l~~~~~-~Pv~vK~v~~---------------~~~a~~~~~~G------~d~i~vs~~gg~~~~~~~--------~ 262 (367)
.+.+|+.++ .||.+|+... .+.++.+.++| +|+|.+++....+....+ .
T Consensus 227 iv~aVr~avg~~~V~vRls~~~~~~g~~~~~~~~~~~~la~~le~~G~~gg~~vd~i~v~~~~~~~~~~~~~~~~~~~~~ 306 (402)
T 2hsa_B 227 VVQAVVSAIGADRVGVRVSPAIDHLDAMDSNPLSLGLAVVERLNKIQLHSGSKLAYLHVTQPRYVAYGQTEAGRLGSEEE 306 (402)
T ss_dssp HHHHHHHHHCGGGEEEEECSSCCSTTCCCSCHHHHHHHHHHHHHHHHHHHTSCCSEEEEECCCCCTTTTSSSTTTTHHHH
T ss_pred HHHHHHHHhCCCcEEEEeccccccCCCCCCCCHHHHHHHHHHHHhcCCccCCceEEEEEecCccccccCCccccccCCcc
Confidence 237888874 5999998632 23478889999 999999753211111111 2
Q ss_pred hHHHHHHHHHHhcCCCcEEEecCCCCHHHHHHHHHcC-CCEEEechHHHH
Q 017718 263 TIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALG-ASGIFIGRPVVY 311 (367)
Q Consensus 263 ~~~~l~~i~~~~~~~~~via~GGI~~~~dv~kal~lG-Ad~V~ig~~~l~ 311 (367)
.++.+.++++.+ ++|||++||| +++++.++|+.| ||+|++||+++.
T Consensus 307 ~~~~~~~vk~~~--~iPvi~~G~i-~~~~a~~~l~~g~aD~V~igR~~l~ 353 (402)
T 2hsa_B 307 EARLMRTLRNAY--QGTFICSGGY-TRELGIEAVAQGDADLVSYGRLFIS 353 (402)
T ss_dssp HHHHHHHHHHHC--SSCEEEESSC-CHHHHHHHHHTTSCSEEEESHHHHH
T ss_pred hHHHHHHHHHHC--CCCEEEeCCC-CHHHHHHHHHCCCCceeeecHHHHh
Confidence 456677788777 7999999999 999999999988 999999999975
|
| >2uva_G Fatty acid synthase beta subunits; fungal, dehydratase, enoyl reductase, ketoacyl synthase, ketoacyl reductase; HET: FMN; 3.10A {Thermomyces lanuginosus} PDB: 2uvc_G* | Back alignment and structure |
|---|
Probab=99.38 E-value=2.2e-12 Score=148.57 Aligned_cols=206 Identities=17% Similarity=0.217 Sum_probs=139.3
Q ss_pred eeccccC-CCCCCcccee---EcCeeeccceEeCcccchhccCChhhHHHHHHHHHcCCceeecCCCCCCHHHHH-----
Q 017718 48 FRPRILI-DVSKIDMNTT---VLGFKISMPIMIAPTAMQKMAHPEGEYATARAASAAGTIMTLSSWSTSSVEEVA----- 118 (367)
Q Consensus 48 l~pr~l~-~~~~vd~st~---i~g~~l~~Pi~iAPm~~~~l~~~~~e~~~a~aa~~~G~~~~vs~~~~~~~e~i~----- 118 (367)
|.||..+ .-.+++++|. ++| ..||+.|||++.. .+..++.++.++|...+++.....+.|++.
T Consensus 558 f~prlv~~~~~~~~l~t~~t~~lg---~~PIi~a~M~~~v-----s~~~LaaAva~aGglG~i~g~g~~~~e~l~~~i~~ 629 (2060)
T 2uva_G 558 HGPRLVKTSVGQTFVDTKMSRLLG---VPPVMVAGMTPTT-----VPWDFVAATMNAGYHIELAGGGYYNAQKMSDAISK 629 (2060)
T ss_dssp HCCEEEECTTCCEEEECHHHHHHT---SCSEEECCCTTTT-----CSHHHHHHHHHTTCEECEEGGGCCSHHHHHHHHHH
T ss_pred cCCcceecCCCceecchhhhhccc---cceEEecCCCCcc-----ccHHHHHHHHHCCCEEEECcCCCCCHHHHHHHHHH
Confidence 4566654 2234455554 355 6999999998422 256899999999999888333334444432
Q ss_pred --hhC--CCceEEEEeecCCH--HHHHHHHHHHHHcCCcE--EEEecCCCCCCchhHHhhhhcCCCCccccccccccccC
Q 017718 119 --STG--PGIRFFQLYVYKDR--NVVAQLVRRAERAGFKA--IALTVDTPRLGRREADIKNRFTLPPFLTLKNFQGLDLG 190 (367)
Q Consensus 119 --~~~--~~~~~~QLy~~~d~--~~~~~~l~ra~~~G~~a--i~itvd~p~~g~r~~~~~~~~~~p~~~~~~~~~~~~~~ 190 (367)
+.. ..++.+.+...... ....++++.+.+.|+.. +.++.+.|.
T Consensus 630 vk~~~~~~~p~gvN~~~~~p~~~~~~~~~~~~~~~~gv~i~gv~~~~G~p~----------------------------- 680 (2060)
T 2uva_G 630 IEKAIPPGRGITVNLIYVNPRAMGWQIPLLGRLRADGVPIEGLTIGAGVPS----------------------------- 680 (2060)
T ss_dssp HGGGSCTTCCEEEEEETTCTTHHHHHHHHHHHHHTTTCCEEEEEEESSCCC-----------------------------
T ss_pred HHhhcccCCCeEecccccCcccchhHHHHHHHHHHcCCCcceEeecCCCCC-----------------------------
Confidence 223 24566666532222 23457888888899887 554333221
Q ss_pred ccccccchhhHHHhhhccCccc-cH-HHHHhhcCCCEEEEecCCHHHHHHH----HHcCCcEEE---EcC--CCCCC--C
Q 017718 191 KMDEANDSGLAAYVAGQIDRSL-SW-KWLQTITKLPILVKGVLTAEDARIA----VQAGAAGII---VSN--HGARQ--L 257 (367)
Q Consensus 191 ~~~~~~~~~~~~~~~~~~d~~~-~~-~~l~~~~~~Pv~vK~v~~~~~a~~~----~~~G~d~i~---vs~--~gg~~--~ 257 (367)
. .+ +.+++ .+++++ +.+.+..+|+.+ .++|+|+|+ +.| .||+. .
T Consensus 681 ---------------------~e~~~~~l~~-~gi~~i-~~v~~~~~a~~~v~~l~~aG~D~iV~~q~~G~eaGGH~g~~ 737 (2060)
T 2uva_G 681 ---------------------IEVANEYIQT-LGIRHI-SFKPGSVDAIQQVINIAKANPTFPIILQWTGGRGGGHHSFE 737 (2060)
T ss_dssp ---------------------HHHHHHHHHH-SCCSEE-EECCCSHHHHHHHHHHHHHCTTSCEEEEECCTTSSSSCCSC
T ss_pred ---------------------HHHHHHHHHH-cCCeEE-EecCCHHHHHHHHHHHHHcCCCEEEEeeeEcccCCCCCCcc
Confidence 0 12 14443 488886 667777776666 999999999 654 23331 2
Q ss_pred CCccchHHHHHHHHHHhcCCCcEEEecCCCCHHHHHHHH-----------HcCCCEEEechHHHHHhhc
Q 017718 258 DYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKAL-----------ALGASGIFIGRPVVYSLAA 315 (367)
Q Consensus 258 ~~~~~~~~~l~~i~~~~~~~~~via~GGI~~~~dv~kal-----------~lGAd~V~ig~~~l~~l~~ 315 (367)
+...+.+..+++|++.+ ++|||++|||.++.|++++| ++|||+|++||.|+.+..+
T Consensus 738 d~~~~~l~lv~~i~~~~--~ipviaaGGI~~g~~i~aaltg~ws~~~g~palGAdgV~~GT~f~~t~Ea 804 (2060)
T 2uva_G 738 DFHQPILLMYSRIRKCS--NIVLVAGSGFGGSEDTYPYLTGSWSTKFGYPPMPFDGCMFGSRMMTAKEA 804 (2060)
T ss_dssp CSHHHHHHHHHHHHTST--TEEEEEESSCCSHHHHHHHHHTCGGGTTTSCCCCCSCEEESGGGGGBTTS
T ss_pred cccchHHHHHHHHHHHc--CCCEEEeCCCCCHHHHHHHhcCcchhhcCCCCCCCCEEEEchhhhcCcCC
Confidence 33466788899998876 79999999999999999999 9999999999999875444
|
| >3hgj_A Chromate reductase; TIM barrel, oxidoreductase; HET: FMN; 2.00A {Thermus scotoductus} SCOP: c.1.4.0 PDB: 3hf3_A* | Back alignment and structure |
|---|
Probab=99.36 E-value=8.1e-11 Score=114.54 Aligned_cols=94 Identities=20% Similarity=0.250 Sum_probs=75.2
Q ss_pred HHHHhhc--CCCEEEEecC--------CHHH----HHHHHHcCCcEEEEcCCCCCC----CCCcc-chHHHHHHHHHHhc
Q 017718 215 KWLQTIT--KLPILVKGVL--------TAED----ARIAVQAGAAGIIVSNHGARQ----LDYVP-ATIMALEEVVKATQ 275 (367)
Q Consensus 215 ~~l~~~~--~~Pv~vK~v~--------~~~~----a~~~~~~G~d~i~vs~~gg~~----~~~~~-~~~~~l~~i~~~~~ 275 (367)
+.+|+.+ +.||.+|+.. +.++ ++.+.++|+|+|.+++ |+.. ...++ ..++.+.++++.+
T Consensus 210 ~aVR~avG~d~pV~vRls~~~~~~~g~~~~~~~~la~~L~~~Gvd~i~vs~-g~~~~~~~~~~~~~~~~~~~~~ir~~~- 287 (349)
T 3hgj_A 210 QAVREVVPRELPLFVRVSATDWGEGGWSLEDTLAFARRLKELGVDLLDCSS-GGVVLRVRIPLAPGFQVPFADAVRKRV- 287 (349)
T ss_dssp HHHHHHSCTTSCEEEEEESCCCSTTSCCHHHHHHHHHHHHHTTCCEEEEEC-CCSCSSSCCCCCTTTTHHHHHHHHHHH-
T ss_pred HHHHHHhcCCceEEEEeccccccCCCCCHHHHHHHHHHHHHcCCCEEEEec-CCcCcccccCCCccccHHHHHHHHHHc-
Confidence 3888888 6899999984 3444 7888999999999985 2221 11122 3567788888877
Q ss_pred CCCcEEEecCCCCHHHHHHHHHcC-CCEEEechHHHH
Q 017718 276 GRIPVFLDGGVRRGTDVFKALALG-ASGIFIGRPVVY 311 (367)
Q Consensus 276 ~~~~via~GGI~~~~dv~kal~lG-Ad~V~ig~~~l~ 311 (367)
++|||++|||++++++.++|..| ||+|++||+++.
T Consensus 288 -~iPVi~~Ggi~t~e~a~~~l~~G~aD~V~iGR~~la 323 (349)
T 3hgj_A 288 -GLRTGAVGLITTPEQAETLLQAGSADLVLLGRVLLR 323 (349)
T ss_dssp -CCEEEECSSCCCHHHHHHHHHTTSCSEEEESTHHHH
T ss_pred -CceEEEECCCCCHHHHHHHHHCCCceEEEecHHHHh
Confidence 79999999999999999999999 999999999985
|
| >1icp_A OPR1, 12-oxophytodienoate reductase 1; beta-alpha-barrel, protein-FMN-PEG complex, oxidoreductase; HET: FMN 2PE; 1.90A {Solanum lycopersicum} SCOP: c.1.4.1 PDB: 1icq_A* 1ics_A* 3hgr_A* 1vji_A* 2q3r_A* | Back alignment and structure |
|---|
Probab=99.35 E-value=3.2e-11 Score=118.47 Aligned_cols=220 Identities=15% Similarity=0.101 Sum_probs=132.7
Q ss_pred ceeEcCeeeccceEeCcccchhc--cCChhhHH---HHHHHHHcCCceeecCCCCC--------------CHHH------
Q 017718 62 NTTVLGFKISMPIMIAPTAMQKM--AHPEGEYA---TARAASAAGTIMTLSSWSTS--------------SVEE------ 116 (367)
Q Consensus 62 st~i~g~~l~~Pi~iAPm~~~~l--~~~~~e~~---~a~aa~~~G~~~~vs~~~~~--------------~~e~------ 116 (367)
..+|.+.++++.|++|||+...- ..| .+.. +++.|+ |+.++++++... +.+.
T Consensus 19 P~~ig~~~l~NRiv~aPm~~~~a~~g~p-t~~~~~yy~~rA~--g~GLiite~~~v~~~g~~~~~~~gi~~d~~i~~~k~ 95 (376)
T 1icp_A 19 PCKMGKFELCHRVVLAPLTRQRSYGYIP-QPHAILHYSQRST--NGGLLIGEATVISETGIGYKDVPGIWTKEQVEAWKP 95 (376)
T ss_dssp CEEETTEEESCSEEECCCCCCCCGGGSC-CHHHHHHHHHTCC--TTCEEECCCEECSGGGCCSTTCCBCSSHHHHHHHHH
T ss_pred CeeECCEEECCccEECCcCcCcCCCCCC-CHHHHHHHHHhcC--CeeEEEECceeeccccccCcccCccCCHHHHHHHHH
Confidence 47889999999999999975431 122 1222 233332 667777654221 2222
Q ss_pred HHh---hCCCceEEEEeec-------------------------------------CCH------------HHHHHHHHH
Q 017718 117 VAS---TGPGIRFFQLYVY-------------------------------------KDR------------NVVAQLVRR 144 (367)
Q Consensus 117 i~~---~~~~~~~~QLy~~-------------------------------------~d~------------~~~~~~l~r 144 (367)
+.+ ....+.++||+-. ..+ +...+.+++
T Consensus 96 l~~avh~~G~~i~~QL~H~Gr~~~~~~~~~~~~~~apS~~~~~~~~~~~~~~~~~~~~p~~mt~~eI~~~i~~f~~AA~~ 175 (376)
T 1icp_A 96 IVDAVHAKGGIFFCQIWHVGRVSNKDFQPNGEDPISCTDRGLTPQIMSNGIDIAHFTRPRRLTTDEIPQIVNEFRVAARN 175 (376)
T ss_dssp HHHHHHHTTCEEEEEEECCTTSSCTTTSGGGCCCEESSSCCCCCEECTTSSCEECCCCCEECCTTTHHHHHHHHHHHHHH
T ss_pred HHHHHHhcCCeEEEEeecCCCCcCcccccCCCceecCCCCCCccccccccccccCCCCCCcCCHHHHHHHHHHHHHHHHH
Confidence 221 1235788999741 012 355667788
Q ss_pred HHHcCCcEEEEecCCCCCCchhHHhhhhcCCCCccccccccccccCccccccchhhHHHhhhccCccc--c-HHHHHhhc
Q 017718 145 AERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLTLKNFQGLDLGKMDEANDSGLAAYVAGQIDRSL--S-WKWLQTIT 221 (367)
Q Consensus 145 a~~~G~~ai~itvd~p~~g~r~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~--~-~~~l~~~~ 221 (367)
|+++||++|-||..|-. +-+.|--|. .+.+. + +-.++ +. . ...+ . .+.+|+.+
T Consensus 176 a~~aGfDgVEih~a~Gy-------Ll~qFlsp~-~N~R~-D--------~yGGs-le----n--R~r~~~eiv~aVr~av 231 (376)
T 1icp_A 176 AIEAGFDGVEIHGAHGY-------LIDQFMKDQ-VNDRS-D--------KYGGS-LE----N--RCRFALEIVEAVANEI 231 (376)
T ss_dssp HHHTTCSEEEEEECTTS-------HHHHHHCTT-TCCCC-S--------TTSSS-HH----H--HHHHHHHHHHHHHHHH
T ss_pred HHHcCCCEEEEcCccch-------hhhhccCCc-ccCCC-C--------ccCcc-HH----H--hHHHHHHHHHHHHHHh
Confidence 99999999999998743 222221111 00000 0 00011 10 0 1122 2 23788887
Q ss_pred C-CCEEEEecCC---------------HHHHHHHHHcCCcEEEEcCCCCCCCCCccchHHHHHHHHHHhcCCCcEEEecC
Q 017718 222 K-LPILVKGVLT---------------AEDARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGG 285 (367)
Q Consensus 222 ~-~Pv~vK~v~~---------------~~~a~~~~~~G~d~i~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~~~via~GG 285 (367)
+ .||.+|.... .+.++.+.++|+|+|.+++....+...+...++.+.++++.+ ++|||++||
T Consensus 232 g~~~V~vrls~~~~~~g~~~~~~~~~~~~la~~le~~Gvd~i~v~~~~~~~~~~~~~~~~~~~~vr~~~--~iPvi~~G~ 309 (376)
T 1icp_A 232 GSDRVGIRISPFAHYNEAGDTNPTALGLYMVESLNKYDLAYCHVVEPRMKTAWEKIECTESLVPMRKAY--KGTFIVAGG 309 (376)
T ss_dssp CGGGEEEEECTTCCTTTCCCSCHHHHHHHHHHHHGGGCCSEEEEECCSCCC------CCCCSHHHHHHC--CSCEEEESS
T ss_pred cCCceEEEeccccccCCCCCCCCHHHHHHHHHHHHHcCCCEEEEcCCcccCCCCccccHHHHHHHHHHc--CCCEEEeCC
Confidence 5 3999999731 244788899999999997522111101111234456777777 789999999
Q ss_pred CCCHHHHHHHHHcC-CCEEEechHHHH
Q 017718 286 VRRGTDVFKALALG-ASGIFIGRPVVY 311 (367)
Q Consensus 286 I~~~~dv~kal~lG-Ad~V~ig~~~l~ 311 (367)
| +++++.++|+.| ||+|++||+++.
T Consensus 310 i-~~~~a~~~l~~g~aD~V~~gR~~l~ 335 (376)
T 1icp_A 310 Y-DREDGNRALIEDRADLVAYGRLFIS 335 (376)
T ss_dssp C-CHHHHHHHHHTTSCSEEEESHHHHH
T ss_pred C-CHHHHHHHHHCCCCcEEeecHHHHh
Confidence 9 899999999987 999999999985
|
| >3l5a_A NADH/flavin oxidoreductase/NADH oxidase; OLD yellow enzyme family, OYE-like FMN-binding domain, TIM B oxidoreductase; HET: PGE; 1.65A {Staphylococcus aureus} | Back alignment and structure |
|---|
Probab=99.29 E-value=7.5e-11 Score=117.35 Aligned_cols=239 Identities=17% Similarity=0.176 Sum_probs=135.6
Q ss_pred eeeccccC--CCCCCccceeE-cCeeeccceEeCcccchhccCChh---hH--HHHHHHHHcCCceeecCCCC-------
Q 017718 47 LFRPRILI--DVSKIDMNTTV-LGFKISMPIMIAPTAMQKMAHPEG---EY--ATARAASAAGTIMTLSSWST------- 111 (367)
Q Consensus 47 ~l~pr~l~--~~~~vd~st~i-~g~~l~~Pi~iAPm~~~~l~~~~~---e~--~~a~aa~~~G~~~~vs~~~~------- 111 (367)
.|+||... ..+..=...+| .+.++++-|++|||+-.. ..+++ +. ..-+.-++ |+.+++++...
T Consensus 13 ~~~~~~~~M~~~~~Lf~P~~i~g~~~lkNRiv~aPm~~~~-a~~dg~~t~~~~~yy~~rA~-G~GLiIte~~~V~~~g~~ 90 (419)
T 3l5a_A 13 GLVPRGSHMYRYKPLLQSIHLPNGIKISNRFVLSPMTVNA-STKEGYITKADLAYAARRSN-SAGMQVTGAAYIEPYGKL 90 (419)
T ss_dssp --------CCTTGGGGSCEECTTSCEESSSEEECCCCCCC-SCTTCCCCHHHHHHHHHTTT-SCSEEEEEEEESSGGGCC
T ss_pred CcccccccccchhhcCCCEEeCCCCEECCCeEeCCCCCCc-cCCCCCCCHHHHHHHHHHhc-CCcEEEecceEeCccccc
Confidence 46676543 34445567888 899999999999997432 22222 22 22222123 67776653211
Q ss_pred -------CCHH------HHHh---hCCCceEEEEeecCC--------------------------------H-------H
Q 017718 112 -------SSVE------EVAS---TGPGIRFFQLYVYKD--------------------------------R-------N 136 (367)
Q Consensus 112 -------~~~e------~i~~---~~~~~~~~QLy~~~d--------------------------------~-------~ 136 (367)
.+.+ ++.+ ......++||+-... . +
T Consensus 91 ~~~~~gi~~d~~i~~~k~l~~avh~~G~~i~~QL~H~Gr~~~~~~~~~~~~vapS~i~~~~~~~~~pr~mt~~eI~~ii~ 170 (419)
T 3l5a_A 91 FEYGFNIDHDACIPGLTNMASTMKQHGSLAIIQLAHAGRFSNQAILNFGKVYGPSPMTLHSPIEHVVIAMSHEKINSIIQ 170 (419)
T ss_dssp STTCEECSSGGGHHHHHHHHHHHHTTSCEEEEEEECCGGGCHHHHHHHSEEEESSCEEECSSSSEEEEECCHHHHHHHHH
T ss_pred CCCccccccHHHHHHHHHHHHHHHhcCCEEEEEeccCCCcccccccCCCceeCCCCCccccCCCCCCccCCHHHHHHHHH
Confidence 0111 1222 122567788863110 0 1
Q ss_pred HHHHHHHHHHHcCCcEEEEecCCCCCCchhHHhhhhcCCCCccccccccccccCccccccchhhHHHhhhccCcccc---
Q 017718 137 VVAQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLTLKNFQGLDLGKMDEANDSGLAAYVAGQIDRSLS--- 213 (367)
Q Consensus 137 ~~~~~l~ra~~~G~~ai~itvd~p~~g~r~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~--- 213 (367)
...+.+++|+++||++|.|+..+-. +-+.|--|. .+.+. + +-.++.+. . ...|-
T Consensus 171 ~F~~AA~rA~~AGfDgVEIH~ahGY-------Ll~QFlSp~-~N~Rt-D--------~yGGs~le----n--R~Rf~~ev 227 (419)
T 3l5a_A 171 QYRDATLRAIKAGFDGVEISIAQRL-------LIQTFFSTF-SNRRT-D--------HYGADSLK----N--RARLCLEV 227 (419)
T ss_dssp HHHHHHHHHHHTTCSEEEEECCTTS-------HHHHHHCTT-TCCCC-S--------TTSTTCHH----H--HHHHHHHH
T ss_pred HHHHHHHHHHHcCCCEEEECCccch-------HHHHccCCc-ccccc-c--------CCCCchhh----h--hhHHHHHH
Confidence 2345567888999999999998733 222231111 00000 0 00111100 0 11121
Q ss_pred HHHHHhhc------CCCEEEEecC----------CHH----HHHHHHH-cCCcEEEEcCCCC----C-CCCCcc-chHHH
Q 017718 214 WKWLQTIT------KLPILVKGVL----------TAE----DARIAVQ-AGAAGIIVSNHGA----R-QLDYVP-ATIMA 266 (367)
Q Consensus 214 ~~~l~~~~------~~Pv~vK~v~----------~~~----~a~~~~~-~G~d~i~vs~~gg----~-~~~~~~-~~~~~ 266 (367)
.+.+|+.+ +.||.+|+.. +.+ .++.+.+ +|+|+|.|++.+. . +...++ ...+.
T Consensus 228 v~aVr~~v~~~~~~~f~v~vRis~~~~~~~~~G~~~ed~~~la~~L~~~~Gvd~I~vs~g~~~~~~~~~~~~g~~~~~~~ 307 (419)
T 3l5a_A 228 MRAVQEVIDKEAPDNFILGFRATPEETRGSDLGYTIDEFNQLIDWVMDVSNIQYLAIASWGRHIYQNTSRTPGDHFGRPV 307 (419)
T ss_dssp HHHHHHHHHHHCCTTCEEEEEECSCEEETTEEEECHHHHHHHHHHHHHHSCCCCEEECCTTCCGGGCBCCCSSTTTTSBH
T ss_pred HHHHHHHHhhhcCCCeeEEEecccccccCCCCCCCHHHHHHHHHHHHhhcCCcEEEEeeCCccccccccCCCCccccHHH
Confidence 23677766 5799999864 333 3778888 9999999976332 1 111122 12345
Q ss_pred HHHHHHHhcCCCcEEEecCCCCHHHHHHHHHcCCCEEEechHHHH
Q 017718 267 LEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFIGRPVVY 311 (367)
Q Consensus 267 l~~i~~~~~~~~~via~GGI~~~~dv~kal~lGAd~V~ig~~~l~ 311 (367)
+..+++.+++++|||++|||++++++.++|+. ||+|++||+++.
T Consensus 308 a~~Ik~~v~~~iPVI~~GgI~t~e~Ae~~L~~-aDlVaiGR~~Ia 351 (419)
T 3l5a_A 308 NQIVYEHLAGRIPLIASGGINSPESALDALQH-ADMVGMSSPFVT 351 (419)
T ss_dssp HHHHHHHHTTSSCEEECSSCCSHHHHHHHGGG-CSEEEESTHHHH
T ss_pred HHHHHHHcCCCCeEEEECCCCCHHHHHHHHHh-CCcHHHHHHHHH
Confidence 66777777667999999999999999999999 999999999974
|
| >3kru_A NADH:flavin oxidoreductase/NADH oxidase; homotetramer, dimer of dimers, TIM barrel, thermophilic, OLD enzyme; HET: FMN; 1.60A {Thermoanaerobacter pseudethanolicus AT} SCOP: c.1.4.0 PDB: 3krz_A* | Back alignment and structure |
|---|
Probab=99.29 E-value=2.2e-10 Score=111.12 Aligned_cols=93 Identities=17% Similarity=0.105 Sum_probs=73.1
Q ss_pred HHHHhhc--CCCEEEEecCC--------HH----HHHHHHHcCCcEEEEcCCCCCCC---CCcc-chHHHHHHHHHHhcC
Q 017718 215 KWLQTIT--KLPILVKGVLT--------AE----DARIAVQAGAAGIIVSNHGARQL---DYVP-ATIMALEEVVKATQG 276 (367)
Q Consensus 215 ~~l~~~~--~~Pv~vK~v~~--------~~----~a~~~~~~G~d~i~vs~~gg~~~---~~~~-~~~~~l~~i~~~~~~ 276 (367)
+.+|+.+ +.||.+|+..+ .+ .++.+.++ +|+|.++. |+... ...+ ..++.+.++++.+
T Consensus 201 ~aVr~avg~d~pv~vRls~~~~~~~g~~~~~~~~~a~~l~~~-vd~i~vs~-g~~~~~~~~~~~~~~~~~~~~ir~~~-- 276 (343)
T 3kru_A 201 DEVRKNWPENKPIFVRVSADDYMEGGINIDMMVEYINMIKDK-VDLIDVSS-GGLLNVDINLYPGYQVKYAETIKKRC-- 276 (343)
T ss_dssp HHHHHTSCTTSCEEEEEECCCSSTTSCCHHHHHHHHHHHTTT-CSEEEEEC-CCSSCCCCCCCTTTTHHHHHHHHHHH--
T ss_pred HHHHhcCCccCCeEEEeechhhhccCccHHHHHHHHHHhhcc-ccEEeccC-CceEeeeecccCceeehHHHHHHHhc--
Confidence 3888888 68999999842 33 37788888 99999973 33211 1112 2567778888887
Q ss_pred CCcEEEecCCCCHHHHHHHHHcC-CCEEEechHHHH
Q 017718 277 RIPVFLDGGVRRGTDVFKALALG-ASGIFIGRPVVY 311 (367)
Q Consensus 277 ~~~via~GGI~~~~dv~kal~lG-Ad~V~ig~~~l~ 311 (367)
++|||++|||++++++.++|..| ||+|++||+++.
T Consensus 277 ~iPVi~~Ggi~t~e~Ae~~l~~G~aD~V~iGR~~la 312 (343)
T 3kru_A 277 NIKTSAVGLITTQELAEEILSNERADLVALGRELLR 312 (343)
T ss_dssp TCEEEEESSCCCHHHHHHHHHTTSCSEEEESHHHHH
T ss_pred CcccceeeeeeHHHHHHHHHhchhhHHHHHHHHHhc
Confidence 79999999999999999999998 999999999985
|
| >1ps9_A 2,4-dienoyl-COA reductase; iron-sulfur, TIM barrel, flavodoxin, flavin, electron transfer, hydride transfer, oxidoreductase; HET: FAD FMN NAP MDE; 2.20A {Escherichia coli} SCOP: c.1.4.1 c.3.1.1 c.4.1.1 | Back alignment and structure |
|---|
Probab=99.27 E-value=1.2e-10 Score=122.54 Aligned_cols=224 Identities=13% Similarity=0.090 Sum_probs=136.4
Q ss_pred ceeEcCeeeccceEeCcccchhccCChh-h--HHHHHHHHHcCCceeecCCCCC--------------CHHH------HH
Q 017718 62 NTTVLGFKISMPIMIAPTAMQKMAHPEG-E--YATARAASAAGTIMTLSSWSTS--------------SVEE------VA 118 (367)
Q Consensus 62 st~i~g~~l~~Pi~iAPm~~~~l~~~~~-e--~~~a~aa~~~G~~~~vs~~~~~--------------~~e~------i~ 118 (367)
..+|.+.+++++|++|||+...-..+.. + ...-+.-++-|..++++++.+. +.+. +.
T Consensus 8 p~~ig~~~l~nRi~~apm~~~~~~~~~~~~~~~~~y~~ra~gg~gliite~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~ 87 (671)
T 1ps9_A 8 PLDLGFTTLKNRVLMGSMHTGLEEYPDGAERLAAFYAERARHGVALIVSGGIAPDLTGVGMEGGAMLNDASQIPHHRTIT 87 (671)
T ss_dssp CEECSSCEESSSEEECCCCCSCTTSTTHHHHHHHHHHHHHHTTCSEEEEEEEBSSSTTCSBTTCCBCCSGGGHHHHHHHH
T ss_pred CeeECCEEEcCceEECCccCCcCCCCCCcHHHHHHHHHHhcCCCCEEEecccccCccccCCCCCCccCCHHHHHHHHHHH
Confidence 4778899999999999997532111211 1 2222223356788777654211 1121 22
Q ss_pred h---hCCCceEEEEeecC---------------------CH------------HHHHHHHHHHHHcCCcEEEEecCCCCC
Q 017718 119 S---TGPGIRFFQLYVYK---------------------DR------------NVVAQLVRRAERAGFKAIALTVDTPRL 162 (367)
Q Consensus 119 ~---~~~~~~~~QLy~~~---------------------d~------------~~~~~~l~ra~~~G~~ai~itvd~p~~ 162 (367)
+ ....+.++||+-.. .+ +...+.+++|+++||+++-||..|..
T Consensus 88 ~~vh~~g~~i~~Ql~h~Gr~~~~~~~~~ps~~~~~~~~~~p~~~t~~ei~~~i~~~~~aA~~a~~aGfd~veih~~~gy- 166 (671)
T 1ps9_A 88 EAVHQEGGKIALQILHTGRYSYQPHLVAPSALQAPINRFVPHELSHEEILQLIDNFARCAQLAREAGYDGVEVMGSEGY- 166 (671)
T ss_dssp HHHHHTTCCEEEEECCCGGGSBSTTCEESSSCCCTTCSSCCEECCHHHHHHHHHHHHHHHHHHHHTTCSEEEEEECBTS-
T ss_pred HHHHhcCCEEEEEeccCCcccCCCCCcCCCCcccccCCCCCccCCHHHHHHHHHHHHHHHHHHHHcCCCEEEEccccch-
Confidence 1 22357899997421 12 34556778889999999999998744
Q ss_pred CchhHHhhhhcCCCCccccccccccccCccccccchhhHHHhhhccCcccc---HHHHHhhc--CCCEEEEecC------
Q 017718 163 GRREADIKNRFTLPPFLTLKNFQGLDLGKMDEANDSGLAAYVAGQIDRSLS---WKWLQTIT--KLPILVKGVL------ 231 (367)
Q Consensus 163 g~r~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~---~~~l~~~~--~~Pv~vK~v~------ 231 (367)
+-+.|--|. .+.+. + +-.++ +. . ...+. .+.+|+.+ +.||.+|+..
T Consensus 167 ------l~~qFlsp~-~n~r~-d--------~yGgs-~~----~--r~r~~~eiv~avr~~vG~~~~v~vrls~~~~~~~ 223 (671)
T 1ps9_A 167 ------LINEFLTLR-TNQRS-D--------QWGGD-YR----N--RMRFAVEVVRAVRERVGNDFIIIYRLSMLDLVED 223 (671)
T ss_dssp ------HHHHHHCTT-TCCCC-S--------TTSSS-HH----H--HHHHHHHHHHHHHHHHCSSSEEEEEEEEECCSTT
T ss_pred ------HHHHhCCCc-cCCCc-C--------cCCCc-HH----H--HHHHHHHHHHHHHHHcCCCceEEEEECccccCCC
Confidence 222231111 00000 0 00011 10 0 11222 23788888 6899999872
Q ss_pred --CH----HHHHHHHHcCCcEEEEcCCCCCC------CCCccc-hHHHHHHHHHHhcCCCcEEEecCCCCHHHHHHHHHc
Q 017718 232 --TA----EDARIAVQAGAAGIIVSNHGARQ------LDYVPA-TIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALAL 298 (367)
Q Consensus 232 --~~----~~a~~~~~~G~d~i~vs~~gg~~------~~~~~~-~~~~l~~i~~~~~~~~~via~GGI~~~~dv~kal~l 298 (367)
+. +.++.+.++|+|+|.+++..... ....+. .++.+.++++.+ ++|||++|||.+++++.++++.
T Consensus 224 g~~~~~~~~~a~~l~~~g~d~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~--~iPvi~~Ggi~~~~~a~~~l~~ 301 (671)
T 1ps9_A 224 GGTFAETVELAQAIEAAGATIINTGIGWHEARIPTIATPVPRGAFSWVTRKLKGHV--SLPLVTTNRINDPQVADDILSR 301 (671)
T ss_dssp CCCHHHHHHHHHHHHHHTCSEEEEEECBTTCSSCSSSTTSCTTTTHHHHHHHTTSC--SSCEEECSSCCSHHHHHHHHHT
T ss_pred CCCHHHHHHHHHHHHhcCCCEEEcCCCccccccccccccCCcchHHHHHHHHHHhc--CceEEEeCCCCCHHHHHHHHHc
Confidence 23 33788899999999997521100 011111 245666666655 7999999999999999999999
Q ss_pred C-CCEEEechHHHH
Q 017718 299 G-ASGIFIGRPVVY 311 (367)
Q Consensus 299 G-Ad~V~ig~~~l~ 311 (367)
| ||+|++||+++.
T Consensus 302 g~aD~V~~gR~~l~ 315 (671)
T 1ps9_A 302 GDADMVSMARPFLA 315 (671)
T ss_dssp TSCSEEEESTHHHH
T ss_pred CCCCEEEeCHHHHh
Confidence 8 999999999985
|
| >3l5l_A Xenobiotic reductase A; TIM barrel, oxidoreductase; HET: BU3 FMN; 1.03A {Pseudomonas putida} SCOP: c.1.4.0 PDB: 3l5m_A* 3n19_B* 3n16_A* 3l68_A* 3l67_A* 3l65_A* 3l66_A* 3n14_A* 2h8z_A* 2h90_A* 2h8x_A* | Back alignment and structure |
|---|
Probab=99.22 E-value=6.8e-10 Score=108.55 Aligned_cols=95 Identities=19% Similarity=0.125 Sum_probs=74.1
Q ss_pred HHHHhhc--CCCEEEEecCC---------HHH----HHHHHHcCCcEEEEcCCCCC---CCCCcc-chHHHHHHHHHHhc
Q 017718 215 KWLQTIT--KLPILVKGVLT---------AED----ARIAVQAGAAGIIVSNHGAR---QLDYVP-ATIMALEEVVKATQ 275 (367)
Q Consensus 215 ~~l~~~~--~~Pv~vK~v~~---------~~~----a~~~~~~G~d~i~vs~~gg~---~~~~~~-~~~~~l~~i~~~~~ 275 (367)
+.+|+.+ +.||.+|+..+ .++ ++.+.++|+|+|.+++.+-. ....++ ..++.+.++++.+
T Consensus 216 ~aVr~avg~d~pV~vRis~~~~~~~G~~~~~~~~~la~~L~~~Gvd~i~vs~g~~~~~~~~~~~~~~~~~~~~~ir~~~- 294 (363)
T 3l5l_A 216 AAVREVWPENLPLTARFGVLEYDGRDEQTLEESIELARRFKAGGLDLLSVSVGFTIPDTNIPWGPAFMGPIAERVRREA- 294 (363)
T ss_dssp HHHHTTSCTTSCEEEEEEEECSSSCHHHHHHHHHHHHHHHHHTTCCEEEEEECCCSSCCCCCCCTTTTHHHHHHHHHHH-
T ss_pred HHHHHHcCCCceEEEEecchhcCCCCCCCHHHHHHHHHHHHHcCCCEEEEecCccccccccCCCcchhHHHHHHHHHHc-
Confidence 3788887 58999999732 223 78899999999999862211 111222 2467778888877
Q ss_pred CCCcEEEecCCCCHHHHHHHHHcC-CCEEEechHHHH
Q 017718 276 GRIPVFLDGGVRRGTDVFKALALG-ASGIFIGRPVVY 311 (367)
Q Consensus 276 ~~~~via~GGI~~~~dv~kal~lG-Ad~V~ig~~~l~ 311 (367)
++|||++|||++++++.++|..| ||+|++||+++.
T Consensus 295 -~iPVi~~GgI~s~e~a~~~l~~G~aD~V~iGR~~la 330 (363)
T 3l5l_A 295 -KLPVTSAWGFGTPQLAEAALQANQLDLVSVGRAHLA 330 (363)
T ss_dssp -TCCEEECSSTTSHHHHHHHHHTTSCSEEECCHHHHH
T ss_pred -CCcEEEeCCCCCHHHHHHHHHCCCccEEEecHHHHh
Confidence 79999999999999999999999 999999999985
|
| >1o94_A Tmadh, trimethylamine dehydrogenase; electron transport, protein complex; HET: FMN ADP AMP; 2.0A {Methylophilus methylotrophus} SCOP: c.1.4.1 c.3.1.1 c.4.1.1 PDB: 1djn_A* 1o95_A* 2tmd_A* 1djq_A* | Back alignment and structure |
|---|
Probab=99.21 E-value=3.1e-10 Score=120.50 Aligned_cols=223 Identities=12% Similarity=0.081 Sum_probs=133.1
Q ss_pred ceeEcCeeeccceEeCcccchhc-cCChhhHHHHHHHHHcCCceeecCCCCC---------------CHHH------HHh
Q 017718 62 NTTVLGFKISMPIMIAPTAMQKM-AHPEGEYATARAASAAGTIMTLSSWSTS---------------SVEE------VAS 119 (367)
Q Consensus 62 st~i~g~~l~~Pi~iAPm~~~~l-~~~~~e~~~a~aa~~~G~~~~vs~~~~~---------------~~e~------i~~ 119 (367)
.++|.+.+++++|++|||+...- ..|......-+.-++-|+.++++++.+. +.+. +.+
T Consensus 12 p~~ig~~~l~NRiv~apm~~~~~~~~~~~~~~~y~~ra~gG~Gliite~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 91 (729)
T 1o94_A 12 PIQIGPKTLRNRFYQVPHCIGAGSDKPGFQSAHRSVKAEGGWAALNTEYCSINPESDDTHRLSARIWDEGDVRNLKAMTD 91 (729)
T ss_dssp CEEETTEEESSSEEECCCCCSCTTTCHHHHHHHHHHHHHTTCSEEEEEEEESSTTSCCTTSCCEECSSHHHHHHHHHHHH
T ss_pred CeeECCEEECCccEECCCcCCcCCCCcHHHHHHHHHHhcCCCCEEEEcceEecCcccCCCCCCCccCChHHhHHHHHHHH
Confidence 47889999999999999975311 1121112222222356777776543110 1221 211
Q ss_pred ---hCCCceEEEEeecC-----------------------C---------------HHHHHHHHHHHHHcCCcEEEEecC
Q 017718 120 ---TGPGIRFFQLYVYK-----------------------D---------------RNVVAQLVRRAERAGFKAIALTVD 158 (367)
Q Consensus 120 ---~~~~~~~~QLy~~~-----------------------d---------------~~~~~~~l~ra~~~G~~ai~itvd 158 (367)
....+.++||+-.. + .+...+.+++|+++||++|-||..
T Consensus 92 ~vh~~g~~i~~Ql~h~Gr~~~~~~~~~~~~~ps~~~~~~~~~~~p~~~t~~eI~~~i~~f~~aA~~a~~aGfDgVEih~a 171 (729)
T 1o94_A 92 EVHKYGALAGVELWYGGAHAPNMESRATPRGPSQYASEFETLSYCKEMDLSDIAQVQQFYVDAAKRSRDAGFDIVYVYGA 171 (729)
T ss_dssp HHHTTTCEEEEEEECCGGGSCCTTTCCCCEESSCCBCSSSTTCBCEECCHHHHHHHHHHHHHHHHHHHHTTCSEEEEEEC
T ss_pred HHHhCCCeEEEEecCCCccccccccCCCCcCCCcccccccCCCCCCcCCHHHHHHHHHHHHHHHHHHHHcCCCEEEEccc
Confidence 12357889997410 0 144566778889999999999998
Q ss_pred CCCCCchhHHhhhhcCCCCccccccccccccCccccccchhhHHHhhhccCcccc---HHHHHhhc--CCCEEEEecC--
Q 017718 159 TPRLGRREADIKNRFTLPPFLTLKNFQGLDLGKMDEANDSGLAAYVAGQIDRSLS---WKWLQTIT--KLPILVKGVL-- 231 (367)
Q Consensus 159 ~p~~g~r~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~---~~~l~~~~--~~Pv~vK~v~-- 231 (367)
|.+ +-+.|--|. .+.+. + +-.++ + .. ...+. .+.+|+.+ +.||.+|++.
T Consensus 172 ~gy-------Ll~qFlsp~-~N~R~-D--------~yGGs-~----en--R~r~~~eiv~avr~~vg~~~pv~vrls~~~ 227 (729)
T 1o94_A 172 HSY-------LPLQFLNPY-YNKRT-D--------KYGGS-L----EN--RARFWLETLEKVKHAVGSDCAIATRFGVDT 227 (729)
T ss_dssp TTC-------HHHHHHCTT-TCCCC-S--------TTSSS-H----HH--HTHHHHHHHHHHHHHHTTTSEEEEEEEEEC
T ss_pred cch-------HHHHhcCCc-cCCCc-C--------cCCCC-H----HH--HhHHHHHHHHHHHHHhCCCceEEEEEcccc
Confidence 843 223331111 00000 0 00111 1 00 12232 23888888 7899999962
Q ss_pred -------C-H----HHHHHHHHcCCcEEEEcCCCC-----CC---CCCccc-hHHHHHHHHHHhcCCCcEEEecCCCCHH
Q 017718 232 -------T-A----EDARIAVQAGAAGIIVSNHGA-----RQ---LDYVPA-TIMALEEVVKATQGRIPVFLDGGVRRGT 290 (367)
Q Consensus 232 -------~-~----~~a~~~~~~G~d~i~vs~~gg-----~~---~~~~~~-~~~~l~~i~~~~~~~~~via~GGI~~~~ 290 (367)
+ . +.++.+.+ |+|.+.+++.+. .. ....+. .++...++++.+ ++|||++|||.+++
T Consensus 228 ~~~~~G~~~~~~~~~~~~~l~~-~~d~~~v~~g~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~--~~pvi~~G~i~~~~ 304 (729)
T 1o94_A 228 VYGPGQIEAEVDGQKFVEMADS-LVDMWDITIGDIAEWGEDAGPSRFYQQGHTIPWVKLVKQVS--KKPVLGVGRYTDPE 304 (729)
T ss_dssp SSCTTSCCTTTHHHHHHHHHGG-GCSEEEEEECCSTTGGGTSCCTTTCCTTTTHHHHHHHHTTC--SSCEECCSCCCCHH
T ss_pred CcCCCCCCchHHHHHHHHHHHh-hcCEEEEeeecccccccccCCccccCccccHHHHHHHHHHC--CCEEEEeCCCCCHH
Confidence 1 2 23555554 899999965220 00 011111 356677777766 79999999999999
Q ss_pred HHHHHHHcC-CCEEEechHHHH
Q 017718 291 DVFKALALG-ASGIFIGRPVVY 311 (367)
Q Consensus 291 dv~kal~lG-Ad~V~ig~~~l~ 311 (367)
++.++|+.| ||+|++||+++.
T Consensus 305 ~a~~~l~~g~aD~V~~gR~~l~ 326 (729)
T 1o94_A 305 KMIEIVTKGYADIIGCARPSIA 326 (729)
T ss_dssp HHHHHHHTTSCSBEEESHHHHH
T ss_pred HHHHHHHCCCCCEEEeCchhhc
Confidence 999999998 999999999875
|
| >3k30_A Histamine dehydrogenase; 6-S-cysteinyl-FMN, ADP binding site, oxidoreductase; HET: FMN ADP; 2.70A {Pimelobacter simplex} | Back alignment and structure |
|---|
Probab=99.19 E-value=4.6e-10 Score=118.39 Aligned_cols=224 Identities=14% Similarity=0.037 Sum_probs=135.1
Q ss_pred cceeEcCeeeccceEeCcccchhccCChhh--HHHHHHHHHcCCceeecCCCCC---------------CHH------HH
Q 017718 61 MNTTVLGFKISMPIMIAPTAMQKMAHPEGE--YATARAASAAGTIMTLSSWSTS---------------SVE------EV 117 (367)
Q Consensus 61 ~st~i~g~~l~~Pi~iAPm~~~~l~~~~~e--~~~a~aa~~~G~~~~vs~~~~~---------------~~e------~i 117 (367)
...+|.+.+++++|++|||+... ..+..+ ..+.+..++-|+.++++++... +.+ ++
T Consensus 16 ~p~~ig~~~l~NRiv~apm~~~~-~~~~~~~~~~~~~~~a~gG~gliite~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~ 94 (690)
T 3k30_A 16 EPVQIGPFTTKNRFYQVPHCNGM-GYRDPSAQASMRKIKAEGGWSAVCTEQVEIHATSDIAPFIELRIWDDQDLPALKRI 94 (690)
T ss_dssp CCCEETTEECSSSEEECCCCCSC-SSSCHHHHHHHHHHHHHTTCSEEEEEEEECSGGGCCTTSCCEECSSGGGHHHHHHH
T ss_pred CCeeECCEEECCCeEeCCCcCCC-CCCChHHHHHHHHHHhccCCEEEEecceEeccccccCCCcCCccCCHHHHHHHHHH
Confidence 34788999999999999996432 222212 2344556677887777654211 111 12
Q ss_pred Hh---hCCCceEEEEeecC-------------------------C---------------HHHHHHHHHHHHHcCCcEEE
Q 017718 118 AS---TGPGIRFFQLYVYK-------------------------D---------------RNVVAQLVRRAERAGFKAIA 154 (367)
Q Consensus 118 ~~---~~~~~~~~QLy~~~-------------------------d---------------~~~~~~~l~ra~~~G~~ai~ 154 (367)
.+ ....+.++||+-.. + .+...+.+++|+++||++|.
T Consensus 95 ~~~vh~~g~~i~~Ql~h~Gr~~~~~~~~~~~~~ps~~~~~~~~~~~~~p~~~t~~ei~~~i~~f~~aA~~a~~aGfDgVe 174 (690)
T 3k30_A 95 ADAIHEGGGLAGIELAHNGMNAPNQLSRETPLGPGHLPVAPDTIAPIQARAMTKQDIDDLRRWHRNAVRRSIEAGYDIVY 174 (690)
T ss_dssp HHHHHHTTCEEEEEEECCGGGCCCTTTCCCCEESSSCBSCSSCCCSCBCEECCHHHHHHHHHHHHHHHHHHHHHTCSEEE
T ss_pred HHHHHhcCCEEEEEccCCcccccccccCCCccCCCCCcccccccCCCCCCcCCHHHHHHHHHHHHHHHHHHHHcCCCEEE
Confidence 21 22357889998210 0 14456677889999999999
Q ss_pred EecCCCCCCchhHHhhhhcCCCCccccccccccccCccccccchhhHHHhhhccCcccc---HHHHHhhc--CCCEEEEe
Q 017718 155 LTVDTPRLGRREADIKNRFTLPPFLTLKNFQGLDLGKMDEANDSGLAAYVAGQIDRSLS---WKWLQTIT--KLPILVKG 229 (367)
Q Consensus 155 itvd~p~~g~r~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~---~~~l~~~~--~~Pv~vK~ 229 (367)
||..+++. +-+.|--|. .+.+. + +-.++ +. . ...|. .+.+|+.+ +.||.+|+
T Consensus 175 ih~a~gy~------L~~qFlsp~-~N~R~-D--------~yGGs-~e---n---R~r~~~ei~~avr~~~g~~~~v~~r~ 231 (690)
T 3k30_A 175 VYGAHGYS------GVHHFLSKR-YNQRT-D--------EYGGS-LE---N---RMRLLRELLEDTLDECAGRAAVACRI 231 (690)
T ss_dssp EEECTTCS------HHHHHHCTT-TCCCC-S--------TTSSS-HH---H---HTHHHHHHHHHHHHHHTTSSEEEEEE
T ss_pred Ecccccch------HHHHhCCCc-cCCCc-c--------ccCCC-HH---H---HHHHHHHHHHHHHHHhCCCceEEEEE
Confidence 99987651 222331121 01010 0 00111 10 0 11222 23788888 57999998
Q ss_pred cC--------CHHH----HHHHHHcCCcEEEEcCCCC---C--CCCCcc-chHHHHHHHHHHhcCCCcEEEecCCCCHHH
Q 017718 230 VL--------TAED----ARIAVQAGAAGIIVSNHGA---R--QLDYVP-ATIMALEEVVKATQGRIPVFLDGGVRRGTD 291 (367)
Q Consensus 230 v~--------~~~~----a~~~~~~G~d~i~vs~~gg---~--~~~~~~-~~~~~l~~i~~~~~~~~~via~GGI~~~~d 291 (367)
.. +.++ ++.+.+ |+|.|.++..+- . ...... ..++...++++.+ ++|||++|||+++++
T Consensus 232 s~~~~~~~g~~~~~~~~~~~~l~~-~~d~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~--~~pvi~~G~i~~~~~ 308 (690)
T 3k30_A 232 TVEEEIDGGITREDIEGVLRELGE-LPDLWDFAMGSWEGDSVTSRFAPEGRQEEFVAGLKKLT--TKPVVGVGRFTSPDA 308 (690)
T ss_dssp ECCCCSTTSCCHHHHHHHHHHHTT-SSSEEEEECSCHHHHTCCTTTCCTTTTHHHHTTSGGGC--SSCEEECSCCCCHHH
T ss_pred CccccCCCCCCHHHHHHHHHHHHh-hcCEEEEecccccccCCCCccCCccccHHHHHHHHHHc--CCeEEEeCCCCCHHH
Confidence 63 2333 556655 899999964210 0 011111 1245566666655 799999999999999
Q ss_pred HHHHHHcC-CCEEEechHHHH
Q 017718 292 VFKALALG-ASGIFIGRPVVY 311 (367)
Q Consensus 292 v~kal~lG-Ad~V~ig~~~l~ 311 (367)
+.++|..| ||+|++||+++.
T Consensus 309 a~~~l~~g~~d~v~~gR~~~~ 329 (690)
T 3k30_A 309 MVRQIKAGILDLIGAARPSIA 329 (690)
T ss_dssp HHHHHHTTSCSEEEESHHHHH
T ss_pred HHHHHHCCCcceEEEcHHhHh
Confidence 99999988 999999999874
|
| >1y0e_A Putative N-acetylmannosamine-6-phosphate 2-epimer; mannac-6-P epimerase, NANE, structural genomics, protein STR initiative, PSI; 1.95A {Staphylococcus aureus subsp} SCOP: c.1.2.5 | Back alignment and structure |
|---|
Probab=99.16 E-value=1.4e-09 Score=98.70 Aligned_cols=92 Identities=20% Similarity=0.286 Sum_probs=74.5
Q ss_pred HHHhhc-CCCEEEEecCCHHHHHHHHHcCCcEEEEcCCCCCC--CCC--ccchHHHHHHHHHHhcCCCcEEEecCCCCHH
Q 017718 216 WLQTIT-KLPILVKGVLTAEDARIAVQAGAAGIIVSNHGARQ--LDY--VPATIMALEEVVKATQGRIPVFLDGGVRRGT 290 (367)
Q Consensus 216 ~l~~~~-~~Pv~vK~v~~~~~a~~~~~~G~d~i~vs~~gg~~--~~~--~~~~~~~l~~i~~~~~~~~~via~GGI~~~~ 290 (367)
++++.+ +.++++ .+.+.++++.+.++|+|+|.++++|.+. .+. ..+.++.++++++.+ ++||+++|||++++
T Consensus 112 ~~~~~~~~~~v~~-~~~t~~e~~~~~~~G~d~i~~~~~g~t~~~~~~~~~~~~~~~~~~~~~~~--~ipvia~GGI~~~~ 188 (223)
T 1y0e_A 112 YIRTHAPNVEIMA-DIATVEEAKNAARLGFDYIGTTLHGYTSYTQGQLLYQNDFQFLKDVLQSV--DAKVIAEGNVITPD 188 (223)
T ss_dssp HHHHHCTTSEEEE-ECSSHHHHHHHHHTTCSEEECTTTTSSTTSTTCCTTHHHHHHHHHHHHHC--CSEEEEESSCCSHH
T ss_pred HHHHhCCCceEEe-cCCCHHHHHHHHHcCCCEEEeCCCcCcCCCCCCCCCcccHHHHHHHHhhC--CCCEEEecCCCCHH
Confidence 666665 555554 6678999999999999999887766542 122 345678888888876 79999999999999
Q ss_pred HHHHHHHcCCCEEEechHHH
Q 017718 291 DVFKALALGASGIFIGRPVV 310 (367)
Q Consensus 291 dv~kal~lGAd~V~ig~~~l 310 (367)
|+.+++++|||+|++||+++
T Consensus 189 ~~~~~~~~Gad~v~vG~al~ 208 (223)
T 1y0e_A 189 MYKRVMDLGVHCSVVGGAIT 208 (223)
T ss_dssp HHHHHHHTTCSEEEECHHHH
T ss_pred HHHHHHHcCCCEEEEChHHc
Confidence 99999999999999999864
|
| >3gka_A N-ethylmaleimide reductase; decode biostructures, ssgcid, niaid, targetdb bupsa00093A, structural genomics; HET: FMN; 2.30A {Burkholderia pseudomallei} SCOP: c.1.4.0 | Back alignment and structure |
|---|
Probab=99.16 E-value=2e-09 Score=104.98 Aligned_cols=86 Identities=14% Similarity=-0.014 Sum_probs=68.4
Q ss_pred HHHHhhcCC-CEEEEecCC-----------H----HHHHHHHHcCCcEEEEcCCCCCCCCCccchHHHHHHHHHHhcCCC
Q 017718 215 KWLQTITKL-PILVKGVLT-----------A----EDARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRI 278 (367)
Q Consensus 215 ~~l~~~~~~-Pv~vK~v~~-----------~----~~a~~~~~~G~d~i~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~~ 278 (367)
+.+|+.++. ||.+|+... . +.++.+.++|+|+|.+++. + .++ +.+.++++.+ ++
T Consensus 219 ~aVr~~vg~~~v~vRls~~~~~~g~~~~~~~~~~~~la~~l~~~Gvd~i~v~~~--~---~~~---~~~~~ik~~~--~i 288 (361)
T 3gka_A 219 DAAIDVWSAARVGVHLAPRGDAHTMGDSDPAATFGHVARELGRRRIAFLFARES--F---GGD---AIGQQLKAAF--GG 288 (361)
T ss_dssp HHHHHHHCGGGEEEEECTTCCSSSCCCSCHHHHHHHHHHHHHHTTCSEEEEECC--C---STT---CCHHHHHHHH--CS
T ss_pred HHHHHHcCCCeEEEecccccccCCCCCCCcHHHHHHHHHHHHHcCCCEEEECCC--C---CCH---HHHHHHHHHc--CC
Confidence 378888743 999999742 2 2378889999999999752 2 122 3456777777 78
Q ss_pred cEEEecCCCCHHHHHHHHHcC-CCEEEechHHHH
Q 017718 279 PVFLDGGVRRGTDVFKALALG-ASGIFIGRPVVY 311 (367)
Q Consensus 279 ~via~GGI~~~~dv~kal~lG-Ad~V~ig~~~l~ 311 (367)
|||++||| +++++.++|..| ||+|++||+++.
T Consensus 289 Pvi~~Ggi-t~e~a~~~l~~G~aD~V~iGR~~la 321 (361)
T 3gka_A 289 PFIVNENF-TLDSAQAALDAGQADAVAWGKLFIA 321 (361)
T ss_dssp CEEEESSC-CHHHHHHHHHTTSCSEEEESHHHHH
T ss_pred CEEEeCCC-CHHHHHHHHHcCCccEEEECHHhHh
Confidence 99999999 999999999998 999999999985
|
| >4ab4_A Xenobiotic reductase B; oxidoreductase, OLD yellow enzyme; HET: FMN TNL EDO; 1.50A {Pseudomonas putida KT2440} | Back alignment and structure |
|---|
Probab=99.15 E-value=2.5e-09 Score=104.33 Aligned_cols=86 Identities=20% Similarity=0.058 Sum_probs=68.3
Q ss_pred HHHHhhcC-CCEEEEecCC-----------HH----HHHHHHHcCCcEEEEcCCCCCCCCCccchHHHHHHHHHHhcCCC
Q 017718 215 KWLQTITK-LPILVKGVLT-----------AE----DARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRI 278 (367)
Q Consensus 215 ~~l~~~~~-~Pv~vK~v~~-----------~~----~a~~~~~~G~d~i~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~~ 278 (367)
+.+|+.++ -||.+|+... .+ .++.+.++|+|+|.+++.. .++ +.+.++++.+ ++
T Consensus 211 ~aVr~~vg~~~v~vRls~~~~~~g~~~~~~~~~~~~la~~l~~~Gvd~i~v~~~~-----~~~---~~~~~ik~~~--~i 280 (362)
T 4ab4_A 211 DAAIEVWGAQRVGVHLAPRADAHDMGDADRAETFTYVARELGKRGIAFICSRERE-----ADD---SIGPLIKEAF--GG 280 (362)
T ss_dssp HHHHHHHCGGGEEEEECTTCCSSSCCCTTHHHHHHHHHHHHHHTTCSEEEEECCC-----CTT---CCHHHHHHHH--CS
T ss_pred HHHHHhcCCCceEEEeeccccccccCCCCcHHHHHHHHHHHHHhCCCEEEECCCC-----CCH---HHHHHHHHHC--CC
Confidence 37888874 3999999742 22 2788899999999997522 122 3456777777 78
Q ss_pred cEEEecCCCCHHHHHHHHHcC-CCEEEechHHHH
Q 017718 279 PVFLDGGVRRGTDVFKALALG-ASGIFIGRPVVY 311 (367)
Q Consensus 279 ~via~GGI~~~~dv~kal~lG-Ad~V~ig~~~l~ 311 (367)
|||++||| +++++.++|..| ||+|++||+++.
T Consensus 281 Pvi~~Ggi-t~e~a~~~l~~g~aD~V~iGR~~la 313 (362)
T 4ab4_A 281 PYIVNERF-DKASANAALASGKADAVAFGVPFIA 313 (362)
T ss_dssp CEEEESSC-CHHHHHHHHHTTSCSEEEESHHHHH
T ss_pred CEEEeCCC-CHHHHHHHHHcCCccEEEECHHhHh
Confidence 99999999 999999999998 999999999985
|
| >3igs_A N-acetylmannosamine-6-phosphate 2-epimerase 2; energy metabolism, sugars, csgid, carbohydrate metabolism, isomerase; HET: MSE 16G; 1.50A {Salmonella enterica subsp} SCOP: c.1.2.0 | Back alignment and structure |
|---|
Probab=99.15 E-value=2.3e-09 Score=98.51 Aligned_cols=90 Identities=14% Similarity=0.153 Sum_probs=71.9
Q ss_pred HHHhhcCCCEEEEecCCHHHHHHHHHcCCcEEEEcCCCCCCC-CCccchHHHHHHHHHHhcCCCcEEEecCCCCHHHHHH
Q 017718 216 WLQTITKLPILVKGVLTAEDARIAVQAGAAGIIVSNHGARQL-DYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFK 294 (367)
Q Consensus 216 ~l~~~~~~Pv~vK~v~~~~~a~~~~~~G~d~i~vs~~gg~~~-~~~~~~~~~l~~i~~~~~~~~~via~GGI~~~~dv~k 294 (367)
.+++ .++++++ .+.+.++++.+.++|+|+|.+.++|.+.. ....+.++.++++++. ++|||++|||.+++|+.+
T Consensus 124 ~~~~-~g~~v~~-~v~t~eea~~a~~~Gad~Ig~~~~g~t~~~~~~~~~~~~i~~l~~~---~ipvIA~GGI~t~~d~~~ 198 (232)
T 3igs_A 124 RIHH-HHLLTMA-DCSSVDDGLACQRLGADIIGTTMSGYTTPDTPEEPDLPLVKALHDA---GCRVIAEGRYNSPALAAE 198 (232)
T ss_dssp HHHH-TTCEEEE-ECCSHHHHHHHHHTTCSEEECTTTTSSSSSCCSSCCHHHHHHHHHT---TCCEEEESCCCSHHHHHH
T ss_pred HHHH-CCCEEEE-eCCCHHHHHHHHhCCCCEEEEcCccCCCCCCCCCCCHHHHHHHHhc---CCcEEEECCCCCHHHHHH
Confidence 4443 3666655 57889999999999999998766654321 1234578888888763 799999999999999999
Q ss_pred HHHcCCCEEEechHHH
Q 017718 295 ALALGASGIFIGRPVV 310 (367)
Q Consensus 295 al~lGAd~V~ig~~~l 310 (367)
++.+|||+|++|+.++
T Consensus 199 ~~~~GadgV~VGsal~ 214 (232)
T 3igs_A 199 AIRYGAWAVTVGSAIT 214 (232)
T ss_dssp HHHTTCSEEEECHHHH
T ss_pred HHHcCCCEEEEehHhc
Confidence 9999999999999886
|
| >3q58_A N-acetylmannosamine-6-phosphate 2-epimerase; TIM beta/alpha barrel, ribulose-phosphate binding barrel, carbohydrate metabolic process; HET: BTB; 1.80A {Salmonella enterica subsp} | Back alignment and structure |
|---|
Probab=99.14 E-value=1.3e-09 Score=99.89 Aligned_cols=91 Identities=15% Similarity=0.133 Sum_probs=72.3
Q ss_pred HHHhhcCCCEEEEecCCHHHHHHHHHcCCcEEEEcCCCCCCC-CCccchHHHHHHHHHHhcCCCcEEEecCCCCHHHHHH
Q 017718 216 WLQTITKLPILVKGVLTAEDARIAVQAGAAGIIVSNHGARQL-DYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFK 294 (367)
Q Consensus 216 ~l~~~~~~Pv~vK~v~~~~~a~~~~~~G~d~i~vs~~gg~~~-~~~~~~~~~l~~i~~~~~~~~~via~GGI~~~~dv~k 294 (367)
.+++ .++++++ .+.+.++++.+.++|+|+|.+.++|.+.. ....+.++.++++++. ++|||++|||.+++|+.+
T Consensus 124 ~~~~-~g~~v~~-~v~t~eea~~a~~~Gad~Ig~~~~g~t~~~~~~~~~~~li~~l~~~---~ipvIA~GGI~t~~d~~~ 198 (229)
T 3q58_A 124 RIRL-HGLLAMA-DCSTVNEGISCHQKGIEFIGTTLSGYTGPITPVEPDLAMVTQLSHA---GCRVIAEGRYNTPALAAN 198 (229)
T ss_dssp HHHH-TTCEEEE-ECSSHHHHHHHHHTTCSEEECTTTTSSSSCCCSSCCHHHHHHHHTT---TCCEEEESSCCSHHHHHH
T ss_pred HHHH-CCCEEEE-ecCCHHHHHHHHhCCCCEEEecCccCCCCCcCCCCCHHHHHHHHHc---CCCEEEECCCCCHHHHHH
Confidence 4443 3666655 57899999999999999998766654321 1234577888888653 799999999999999999
Q ss_pred HHHcCCCEEEechHHHH
Q 017718 295 ALALGASGIFIGRPVVY 311 (367)
Q Consensus 295 al~lGAd~V~ig~~~l~ 311 (367)
++.+|||+|++|+.++.
T Consensus 199 ~~~~GadgV~VGsai~~ 215 (229)
T 3q58_A 199 AIEHGAWAVTVGSAITR 215 (229)
T ss_dssp HHHTTCSEEEECHHHHC
T ss_pred HHHcCCCEEEEchHhcC
Confidence 99999999999998863
|
| >1xm3_A Thiazole biosynthesis protein THIG; structural genomics, protein structure initiative, PSI, NESG, northeast structural genomics consortium; 1.80A {Bacillus subtilis} SCOP: c.1.31.1 PDB: 1tyg_A | Back alignment and structure |
|---|
Probab=99.12 E-value=9.1e-09 Score=96.25 Aligned_cols=198 Identities=14% Similarity=0.132 Sum_probs=114.9
Q ss_pred ceeEcCeeeccceEeCcccchhccCChhhHHHHHHHHHcCCcee-ecC-CC---CCCHHHHHhhCC---CceEEEEeecC
Q 017718 62 NTTVLGFKISMPIMIAPTAMQKMAHPEGEYATARAASAAGTIMT-LSS-WS---TSSVEEVASTGP---GIRFFQLYVYK 133 (367)
Q Consensus 62 st~i~g~~l~~Pi~iAPm~~~~l~~~~~e~~~a~aa~~~G~~~~-vs~-~~---~~~~e~i~~~~~---~~~~~QLy~~~ 133 (367)
.++|.|+++++|++++.-+. |+.+ .+.++..+.|+.++ ++- .+ ..+++++.+..+ .+...+.....
T Consensus 3 ~~~i~~~~~~~~~~~~t~g~-----p~~~-~~~~~l~~~Gad~ielg~pr~~~~g~~~~~~~~~l~~~~~~~~pn~~~~~ 76 (264)
T 1xm3_A 3 MLTIGGKSFQSRLLLGTGKY-----PSFD-IQKEAVAVSESDILTFAVRRMNIFEASQPNFLEQLDLSKYTLLPNTAGAS 76 (264)
T ss_dssp CEEETTEEESCCEEEECSCS-----SCHH-HHHHHHHHHTCSEEEEETTSSTTC-------CTTCCGGGSEEEEECTTCS
T ss_pred CeEECCEEecCCCEEEecCC-----CCHH-HHHHHHHHcCCeEEEEcccccccCCCCHHHHHHHHHhcCCeEcCCccccC
Confidence 47799999999999998654 3333 34567777787765 231 11 223444443322 12222322224
Q ss_pred CHHHHHHHHHHHHHcCCcEEEEecCCCCCCchhHHhhhhcCCCCccccccccccccCccccccchhhHHHhhhccCcccc
Q 017718 134 DRNVVAQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLTLKNFQGLDLGKMDEANDSGLAAYVAGQIDRSLS 213 (367)
Q Consensus 134 d~~~~~~~l~ra~~~G~~ai~itvd~p~~g~r~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~ 213 (367)
+.+.....++.++++|...+ ++++.... .|.. .+....
T Consensus 77 ~~~~~~~f~~~a~~agg~~~-i~l~i~~d------------~~~~-----------------------------~~e~~~ 114 (264)
T 1xm3_A 77 TAEEAVRIARLAKASGLCDM-IKVEVIGC------------SRSL-----------------------------LPDPVE 114 (264)
T ss_dssp SHHHHHHHHHHHHHTTCCSS-EEECCBCC------------TTTC-----------------------------CBCHHH
T ss_pred CHHHHHHHHHHHHHcCCCCe-EEEeecCC------------Cccc-----------------------------ccchHH
Confidence 45554456777777653322 23332110 0000 000001
Q ss_pred H-HHHHhhc--CCCEEEEecCCHHHHHHHHHcCCcEEEEcCC-CCCCCCCccchHHHHHHHHHHhcCCCcEEEecCCCCH
Q 017718 214 W-KWLQTIT--KLPILVKGVLTAEDARIAVQAGAAGIIVSNH-GARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRG 289 (367)
Q Consensus 214 ~-~~l~~~~--~~Pv~vK~v~~~~~a~~~~~~G~d~i~vs~~-gg~~~~~~~~~~~~l~~i~~~~~~~~~via~GGI~~~ 289 (367)
+ +.+++.. ++.++.-.+.+.+.++++.+.|+|+|...+. -|+. .+....+.|.++++.. ++||++.|||+++
T Consensus 115 ~~~~a~~~~~~g~~vi~~~~~~~~~a~~~~~~gad~v~~~~~~~Gt~--~~~~~~~~l~~i~~~~--~iPviv~gGI~t~ 190 (264)
T 1xm3_A 115 TLKASEQLLEEGFIVLPYTSDDVVLARKLEELGVHAIMPGASPIGSG--QGILNPLNLSFIIEQA--KVPVIVDAGIGSP 190 (264)
T ss_dssp HHHHHHHHHHTTCCEEEEECSCHHHHHHHHHHTCSCBEECSSSTTCC--CCCSCHHHHHHHHHHC--SSCBEEESCCCSH
T ss_pred HHHHHHHHHCCCeEEEEEcCCCHHHHHHHHHhCCCEEEECCcccCCC--CCCCCHHHHHHHHhcC--CCCEEEEeCCCCH
Confidence 1 2344332 5555544456788999999999999944221 1211 1233466788887754 8999999999999
Q ss_pred HHHHHHHHcCCCEEEechHHHH
Q 017718 290 TDVFKALALGASGIFIGRPVVY 311 (367)
Q Consensus 290 ~dv~kal~lGAd~V~ig~~~l~ 311 (367)
+|+.+++++|||+|.+|++++.
T Consensus 191 eda~~~~~~GAdgViVGSAi~~ 212 (264)
T 1xm3_A 191 KDAAYAMELGADGVLLNTAVSG 212 (264)
T ss_dssp HHHHHHHHTTCSEEEESHHHHT
T ss_pred HHHHHHHHcCCCEEEEcHHHhC
Confidence 9999999999999999998764
|
| >1mzh_A Deoxyribose-phosphate aldolase; alpha-beta barrel, structural genomics, PSI, protein structure initiative; 2.00A {Aquifex aeolicus} SCOP: c.1.10.1 | Back alignment and structure |
|---|
Probab=99.04 E-value=4.2e-09 Score=96.24 Aligned_cols=90 Identities=23% Similarity=0.248 Sum_probs=71.0
Q ss_pred HHHHHhhcCCCEEEEec-----CCH----HHHHHHHHcCCcEEEEcCCCCCCCCCccchHHHHHHHHHHhcCCCcEEEec
Q 017718 214 WKWLQTITKLPILVKGV-----LTA----EDARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDG 284 (367)
Q Consensus 214 ~~~l~~~~~~Pv~vK~v-----~~~----~~a~~~~~~G~d~i~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~~~via~G 284 (367)
++.+++..+ |+++|.+ .+. +.++.+.++|+|+|.+ ++|. ..+..+++.++++++.+++++||+++|
T Consensus 108 i~~v~~a~~-pv~vKvi~e~~~l~~~~~~~~a~~a~eaGad~I~t-stg~---~~gga~~~~i~~v~~~v~~~ipVia~G 182 (225)
T 1mzh_A 108 LKEIFRETP-SAVHKVIVETPYLNEEEIKKAVEICIEAGADFIKT-STGF---APRGTTLEEVRLIKSSAKGRIKVKASG 182 (225)
T ss_dssp HHHHHHTCT-TSEEEEECCGGGCCHHHHHHHHHHHHHHTCSEEEC-CCSC---SSSCCCHHHHHHHHHHHTTSSEEEEES
T ss_pred HHHHHHHhc-CceEEEEEeCCCCCHHHHHHHHHHHHHhCCCEEEE-CCCC---CCCCCCHHHHHHHHHHhCCCCcEEEEC
Confidence 347777777 9999993 343 3378899999999944 4432 223367888888888886689999999
Q ss_pred CCCCHHHHHHHHHcCCCEEEechH
Q 017718 285 GVRRGTDVFKALALGASGIFIGRP 308 (367)
Q Consensus 285 GI~~~~dv~kal~lGAd~V~ig~~ 308 (367)
||++++|+.+++.+|||.|++++.
T Consensus 183 GI~t~~da~~~l~aGA~~iG~s~~ 206 (225)
T 1mzh_A 183 GIRDLETAISMIEAGADRIGTSSG 206 (225)
T ss_dssp SCCSHHHHHHHHHTTCSEEEESCH
T ss_pred CCCCHHHHHHHHHhCchHHHHccH
Confidence 999999999999999998887764
|
| >2uv8_G Fatty acid synthase subunit beta (FAS1); fatty acid biosynthesis, malonyl/palmitoyl transferase, phosphopantetheine, transferase; HET: GVL FMN; 3.10A {Saccharomyces cerevisiae} PDB: 2vkz_G* 3hmj_G* | Back alignment and structure |
|---|
Probab=98.95 E-value=6.2e-09 Score=119.68 Aligned_cols=192 Identities=14% Similarity=0.146 Sum_probs=125.5
Q ss_pred eeEcCeeeccceEeCcccchhccCChhhHHHHHHHHHcCCceeecCCCCCCHHHHH-------hhC--CCceEEEEeecC
Q 017718 63 TTVLGFKISMPIMIAPTAMQKMAHPEGEYATARAASAAGTIMTLSSWSTSSVEEVA-------STG--PGIRFFQLYVYK 133 (367)
Q Consensus 63 t~i~g~~l~~Pi~iAPm~~~~l~~~~~e~~~a~aa~~~G~~~~vs~~~~~~~e~i~-------~~~--~~~~~~QLy~~~ 133 (367)
|+++|+ .||+.+||+... .+..++.|+.++|....+......+.|++. +.. +.++.+.+....
T Consensus 584 t~llg~---~PIi~~gM~~~~-----~~~~lvaAvsnAGglg~l~~~~~~~~e~l~~~I~~~~~~t~~~~~~gvN~~~~~ 655 (2051)
T 2uv8_G 584 SKLIGR---PPLLVPGMTPCT-----VSPDFVAATTNAGYTIELAGGGYFSAAGMTAAIDSVVSQIEKGSTFGINLIYVN 655 (2051)
T ss_dssp HHHHSS---CSEEECCCHHHH-----TCHHHHHHHHHTTCEEEEEGGGCCSHHHHHHHHHHHHHHSCTTCCEEEEEETTC
T ss_pred HHhhCc---cceecCCCcccc-----ccHHHHHHHHcCCcEEEEccCCCCCHHHHHHHHHHHHHhcCCCCceEEEEeecC
Confidence 457883 699999997432 246899999999988888433334444332 212 245666654322
Q ss_pred CH--HHHHHHHHHHHHcCCcE--EEEecCCCCCCchhHHhhhhcCCCCccccccccccccCccccccchhhHHHhhhccC
Q 017718 134 DR--NVVAQLVRRAERAGFKA--IALTVDTPRLGRREADIKNRFTLPPFLTLKNFQGLDLGKMDEANDSGLAAYVAGQID 209 (367)
Q Consensus 134 d~--~~~~~~l~ra~~~G~~a--i~itvd~p~~g~r~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d 209 (367)
.. ....++++.+.+.|+.. +.+..+.|.
T Consensus 656 ~~~~~~~~~~~~~~~~~gv~i~~v~~~ag~p~------------------------------------------------ 687 (2051)
T 2uv8_G 656 PFMLQWGIPLIKELRSKGYPIQFLTIGAGVPS------------------------------------------------ 687 (2051)
T ss_dssp TTHHHHHHHHHHHHHHTTCSEEEEEEESSCCC------------------------------------------------
T ss_pred hhhhhhhHHHHHHHHHcCCCcceEEecCCCCc------------------------------------------------
Confidence 21 11237888888999887 444333221
Q ss_pred ccccH--HHHHhhcCCCEEEEecCCH---HHHHHHHHcCCcEE---EEcC--CCCCC--CCCccchHHHHHHHHHHhcCC
Q 017718 210 RSLSW--KWLQTITKLPILVKGVLTA---EDARIAVQAGAAGI---IVSN--HGARQ--LDYVPATIMALEEVVKATQGR 277 (367)
Q Consensus 210 ~~~~~--~~l~~~~~~Pv~vK~v~~~---~~a~~~~~~G~d~i---~vs~--~gg~~--~~~~~~~~~~l~~i~~~~~~~ 277 (367)
++. +++.+ .+++++.....+. ..+..++++|+|++ ++.| .||+. .+....++..++++++.+ +
T Consensus 688 --~~~~~~~i~~-lG~~vi~~~~~~~~a~~~~~~~~~~g~d~~ii~~~~G~eaGGH~g~~d~~~~~l~l~~~v~~~~--~ 762 (2051)
T 2uv8_G 688 --LEVASEYIET-LGLKYLGLKPGSIDAISQVINIAKAHPNFPIALQWTGGRGGGHHSFEDAHTPMLQMYSKIRRHP--N 762 (2051)
T ss_dssp --HHHHHHHHHH-SCCSCEEECCCSHHHHHHHHHHHHHSTTSCEEEEECCSSCSEECCSCCSSHHHHHHHHHHTTCT--T
T ss_pred --hhhHHHHHHH-cCCEEEEecCchHHHHHHHHHHHHhCCCceeEEEEEccCcCCCCCcccccccHHHHHHHHHhcC--C
Confidence 111 13333 3888876544443 45678888999993 3333 24442 123345667788888776 8
Q ss_pred CcEEEecCCCCHHHHHHHH-----------HcCCCEEEechHHHHHhhc
Q 017718 278 IPVFLDGGVRRGTDVFKAL-----------ALGASGIFIGRPVVYSLAA 315 (367)
Q Consensus 278 ~~via~GGI~~~~dv~kal-----------~lGAd~V~ig~~~l~~l~~ 315 (367)
+|||+.|||.+|.+++.+| +||||+|++||.|+-+-.+
T Consensus 763 ipviaaGGi~dg~~~~aaL~g~w~~~~g~~~lgadGv~~GTrf~~t~Ea 811 (2051)
T 2uv8_G 763 IMLIFGSGFGSADDTYPYLTGEWSTKFDYPPMPFDGFLFGSRVMIAKEV 811 (2051)
T ss_dssp BCCEEESSCCSHHHHTHHHHTCGGGTTTCCCCCCSCEECSGGGTTSTTS
T ss_pred ceEEEeCCCCCHHHHHHHHccccccccCccCCCCceeeechHHHhCccc
Confidence 9999999999999999999 8999999999999865433
|
| >1wv2_A Thiazole moeity, thiazole biosynthesis protein THIG; structural genomics, protein structure initiative, PSI; 2.90A {Pseudomonas aeruginosa} SCOP: c.1.31.1 | Back alignment and structure |
|---|
Probab=98.93 E-value=3.7e-08 Score=90.75 Aligned_cols=86 Identities=16% Similarity=0.259 Sum_probs=70.4
Q ss_pred CCCEEEEecCCHHHHHHHHHcCCcEEEEcCC-CCCCCCCccchHHHHHHHHHHhcCCCcEEEecCCCCHHHHHHHHHcCC
Q 017718 222 KLPILVKGVLTAEDARIAVQAGAAGIIVSNH-GARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGA 300 (367)
Q Consensus 222 ~~Pv~vK~v~~~~~a~~~~~~G~d~i~vs~~-gg~~~~~~~~~~~~l~~i~~~~~~~~~via~GGI~~~~dv~kal~lGA 300 (367)
+..++.-.+.++..++++.++|+++|...+. -|+ ..+..+++.|+++++.. ++|||++|||.+++|+.+++.+||
T Consensus 135 Gf~Vlpy~~dd~~~akrl~~~G~~aVmPlg~pIGs--G~Gi~~~~lI~~I~e~~--~vPVI~eGGI~TPsDAa~AmeLGA 210 (265)
T 1wv2_A 135 GFDVMVYTSDDPIIARQLAEIGCIAVMPLAGLIGS--GLGICNPYNLRIILEEA--KVPVLVDAGVGTASDAAIAMELGC 210 (265)
T ss_dssp TCEEEEEECSCHHHHHHHHHSCCSEEEECSSSTTC--CCCCSCHHHHHHHHHHC--SSCBEEESCCCSHHHHHHHHHHTC
T ss_pred CCEEEEEeCCCHHHHHHHHHhCCCEEEeCCccCCC--CCCcCCHHHHHHHHhcC--CCCEEEeCCCCCHHHHHHHHHcCC
Confidence 5666655668899999999999999977332 122 12456788999988865 899999999999999999999999
Q ss_pred CEEEechHHHH
Q 017718 301 SGIFIGRPVVY 311 (367)
Q Consensus 301 d~V~ig~~~l~ 311 (367)
|+|++|+++..
T Consensus 211 dgVlVgSAI~~ 221 (265)
T 1wv2_A 211 EAVLMNTAIAH 221 (265)
T ss_dssp SEEEESHHHHT
T ss_pred CEEEEChHHhC
Confidence 99999998863
|
| >3zen_D Fatty acid synthase; transferase, mycolic acid biosynthesis, multifunctional ENZY substrate channeling; HET: FMN; 7.50A {Mycobacterium smegmatis} PDB: 4b3y_A* | Back alignment and structure |
|---|
Probab=98.75 E-value=1.9e-08 Score=119.58 Aligned_cols=211 Identities=18% Similarity=0.221 Sum_probs=132.7
Q ss_pred eeeccccCCC-CC--Cccc-eeEcCeeeccceEeCcccchhccCChhhHHHHHHHHHcCCceeecCCCCCCHHHH-----
Q 017718 47 LFRPRILIDV-SK--IDMN-TTVLGFKISMPIMIAPTAMQKMAHPEGEYATARAASAAGTIMTLSSWSTSSVEEV----- 117 (367)
Q Consensus 47 ~l~pr~l~~~-~~--vd~s-t~i~g~~l~~Pi~iAPm~~~~l~~~~~e~~~a~aa~~~G~~~~vs~~~~~~~e~i----- 117 (367)
.|.|+..+.- .. .++. ++++| ..||+.+||++.. ....|+.+..++|....++.....+.+.+
T Consensus 402 ~f~P~l~~~~~g~~~~~t~~~~~lg---~~PIi~a~M~~~~-----s~~~LaaAVs~AGglG~l~~~g~~~~~~l~~~i~ 473 (3089)
T 3zen_D 402 SYAPTVVKLPDGSVKLETKFTRLTG---RSPILLAGMTPTT-----VDAKIVAAAANAGHWAELAGGGQVTEQIFNDRIA 473 (3089)
T ss_dssp GGCCEEEECTTCCEEEECHHHHHHS---SCSEEECCCHHHH-----TSHHHHHHHHHTTCEEEECSTTCCSHHHHHHHHH
T ss_pred ccCCcccccCCCcccccchhhhhcC---CCCEEeCCCcCCc-----CCHHHHHHHHhCCCceeecCCCCCCHHHHHHHHH
Confidence 3666655421 22 2332 34667 7899999998643 13579999999999888854433344432
Q ss_pred --HhhC--CCceEEEEeecCCHHH------HHHHHHHHHHcC--CcEEEEecCCCCCCchhHHhhhhcCCCCcccccccc
Q 017718 118 --ASTG--PGIRFFQLYVYKDRNV------VAQLVRRAERAG--FKAIALTVDTPRLGRREADIKNRFTLPPFLTLKNFQ 185 (367)
Q Consensus 118 --~~~~--~~~~~~QLy~~~d~~~------~~~~l~ra~~~G--~~ai~itvd~p~~g~r~~~~~~~~~~p~~~~~~~~~ 185 (367)
.+.. +.++.+.+. .-++.. .+++++.+.+.| +++++++.+.|-. + .
T Consensus 474 ~~r~~~~~~~p~~vNl~-~~~p~~~~~~~g~~~~~~~~~~~g~~vdgv~~~aG~P~~---e--e---------------- 531 (3089)
T 3zen_D 474 ELETLLEPGRAIQFNTL-FLDPYLWKLQVGGKRLVQRARQSGAPIDGLVVSAGIPDL---E--E---------------- 531 (3089)
T ss_dssp HHHHHSCTTCCCEEEEE-CSCHHHHHHHHHHHHHHHHHHHTTCSCCEEEEESSCCCH---H--H----------------
T ss_pred HHHHhcCCCCceeechh-hcChhhhhhccCHHHHHHHHHHcCCCceEEEEeCCCCch---h--H----------------
Confidence 2222 233434332 123332 146788899999 7778887775520 0 0
Q ss_pred ccccCccccccchhhHHHhhhccCccccHH-HHHhhcCCCEEEEecCCHHHHHHHHHcCCc------EEEEcCC--CCCC
Q 017718 186 GLDLGKMDEANDSGLAAYVAGQIDRSLSWK-WLQTITKLPILVKGVLTAEDARIAVQAGAA------GIIVSNH--GARQ 256 (367)
Q Consensus 186 ~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~-~l~~~~~~Pv~vK~v~~~~~a~~~~~~G~d------~i~vs~~--gg~~ 256 (367)
.. .|- .+++ .++.++.=.+.+.++++++.+.|+| +|++.|. ||+.
T Consensus 532 --------------~~-----------~~i~~l~~-~Gi~~i~~~~~t~~~a~~~~~i~~d~~~~~y~vv~~G~eaGGH~ 585 (3089)
T 3zen_D 532 --------------AV-----------DIIDELNE-VGISHVVFKPGTVEQIRSVIRIAAEVPTKPVIVHIEGGRAGGHH 585 (3089)
T ss_dssp --------------HH-----------HHHTSTTH-HHHCSEEECCCSHHHHHHHHHHHTTSTTSCEEEEECCSSSSEEC
T ss_pred --------------hH-----------HHHHHHHH-cCCEEEEEeCCCHHHHHHHHHhhhhcCCCcEEEEEeCCCcCCCC
Confidence 00 010 2222 3455554346788999999999999 8888763 3332
Q ss_pred CCCccchHHHHHHHHHHhc--CCCcEEEecCCCCHHHHHHHH-----------HcCCCEEEechHHHHHhhc
Q 017718 257 LDYVPATIMALEEVVKATQ--GRIPVFLDGGVRRGTDVFKAL-----------ALGASGIFIGRPVVYSLAA 315 (367)
Q Consensus 257 ~~~~~~~~~~l~~i~~~~~--~~~~via~GGI~~~~dv~kal-----------~lGAd~V~ig~~~l~~l~~ 315 (367)
+.....+.+.+....++ .++|||+.|||.+++++..+| ++|||+|++||.|+....+
T Consensus 586 --g~~~~~~ll~~~~~~ir~~~~iPViaaGGI~d~~~vaaal~g~ws~~~~~p~lGAdGV~vGTrfl~t~Ea 655 (3089)
T 3zen_D 586 --SWEDLDDLLLATYSELRSRSNITICVGGGIGTPERSAEYLSGRWAEVHGYPLMPIDGILVGTAAMATLEA 655 (3089)
T ss_dssp --CSCCHHHHHHHHHHHHTTCTTEEEEEESSCCCTTTTHHHHHTGGGGTTTCCCCCCSEEECSSTTTTCTTS
T ss_pred --CcccHHHHHHHHHHHHhhcCCCeEEEEeCCCCHHHHHHHhccccccccCccCCCCCEEEecHHHHhCccc
Confidence 22244555634433332 279999999999999999999 9999999999999875443
|
| >3aty_A Tcoye, prostaglandin F2A synthase; alpha/beta barrel, oxidoreductase, flavin mononucleotide; HET: FMN; 1.70A {Trypanosoma cruzi} PDB: 3atz_A* | Back alignment and structure |
|---|
Probab=98.72 E-value=1e-07 Score=93.60 Aligned_cols=90 Identities=6% Similarity=-0.157 Sum_probs=68.2
Q ss_pred HHHHhhcC-CCEEEEecCC---------------HHHHHHHHHcCCcEEEEcCCCCCCCCCccchHHHHHHHHHHhcCCC
Q 017718 215 KWLQTITK-LPILVKGVLT---------------AEDARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRI 278 (367)
Q Consensus 215 ~~l~~~~~-~Pv~vK~v~~---------------~~~a~~~~~~G~d~i~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~~ 278 (367)
+.+|+.++ .||.+|+... .+.++.+.++|+|+|.+++.+-.. ...+ .+ +.++++.+ ++
T Consensus 235 ~aVr~avg~~~v~vRis~~~~~~~~~~~~~~~~~~~la~~l~~~Gvd~i~v~~~~~~~--~~~~-~~-~~~ir~~~--~i 308 (379)
T 3aty_A 235 KSVCDAVGSDRVGLRISPLNGVHGMIDSNPEALTKHLCKKIEPLSLAYLHYLRGDMVN--QQIG-DV-VAWVRGSY--SG 308 (379)
T ss_dssp HHHHHHHCGGGEEEEECTTCCGGGCCCSCHHHHHHHHHHHHGGGCCSEEEEECSCTTS--CCCC-CH-HHHHHTTC--CS
T ss_pred HHHHHhcCCCeEEEEECcccccccCCCCCCHHHHHHHHHHHHHhCCCEEEEcCCCcCC--CCcc-HH-HHHHHHHC--CC
Confidence 37888775 4899998742 133778889999999997632111 1111 25 66777666 79
Q ss_pred cEEEecCCCCHHHHHHHHHcC-CCEEEechHHHH
Q 017718 279 PVFLDGGVRRGTDVFKALALG-ASGIFIGRPVVY 311 (367)
Q Consensus 279 ~via~GGI~~~~dv~kal~lG-Ad~V~ig~~~l~ 311 (367)
|||++||| +++++.++|+.| ||+|++||+++.
T Consensus 309 Pvi~~G~i-t~~~a~~~l~~g~aD~V~igR~~l~ 341 (379)
T 3aty_A 309 VKISNLRY-DFEEADQQIREGKVDAVAFGAKFIA 341 (379)
T ss_dssp CEEEESSC-CHHHHHHHHHTTSCSEEEESHHHHH
T ss_pred cEEEECCC-CHHHHHHHHHcCCCeEEEecHHHHh
Confidence 99999999 999999999998 999999999986
|
| >1wa3_A 2-keto-3-deoxy-6-phosphogluconate aldolase; KDPG, pyruvate, lyase; 1.9A {Thermotoga maritima} SCOP: c.1.10.1 PDB: 1vlw_A | Back alignment and structure |
|---|
Probab=98.71 E-value=3e-07 Score=82.05 Aligned_cols=160 Identities=11% Similarity=0.049 Sum_probs=97.6
Q ss_pred cCCHHHHHHHHHHHHHcCCcEEEEecCCCCCCchhHHhhhhcCCCCccccccccccccCccccccchhhHHHhhhccCcc
Q 017718 132 YKDRNVVAQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLTLKNFQGLDLGKMDEANDSGLAAYVAGQIDRS 211 (367)
Q Consensus 132 ~~d~~~~~~~l~ra~~~G~~ai~itvd~p~~g~r~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~ 211 (367)
..+.+...++++.+.+.|++.+-+++.+|..-.--+.+|..+ |+..... ..... .. ...........|--
T Consensus 18 ~~~~~~~~~~~~~~~~~G~~~iev~~~~~~~~~~i~~ir~~~--~~~~~ig-~~~v~--~~-----~~~~~a~~~Gad~i 87 (205)
T 1wa3_A 18 ANSVEEAKEKALAVFEGGVHLIEITFTVPDADTVIKELSFLK--EKGAIIG-AGTVT--SV-----EQCRKAVESGAEFI 87 (205)
T ss_dssp CSSHHHHHHHHHHHHHTTCCEEEEETTSTTHHHHHHHTHHHH--HTTCEEE-EESCC--SH-----HHHHHHHHHTCSEE
T ss_pred cCCHHHHHHHHHHHHHCCCCEEEEeCCChhHHHHHHHHHHHC--CCCcEEE-ecccC--CH-----HHHHHHHHcCCCEE
Confidence 667888889999999999999999998864211123333332 1111000 00000 00 00111111111111
Q ss_pred c--cHH----HHHhhcCCCEEEEecCCHHHHHHHHHcCCcEEEEcCCCCCCCCCccchHHHHHHHHHHhcCCCcEEEecC
Q 017718 212 L--SWK----WLQTITKLPILVKGVLTAEDARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGG 285 (367)
Q Consensus 212 ~--~~~----~l~~~~~~Pv~vK~v~~~~~a~~~~~~G~d~i~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~~~via~GG 285 (367)
+ .+. ...+..++|++. ++.+.+++..+.+.|+|.|.+.. . .....+.++++++.++ ++||+++||
T Consensus 88 v~~~~~~~~~~~~~~~g~~vi~-g~~t~~e~~~a~~~Gad~vk~~~--~-----~~~g~~~~~~l~~~~~-~~pvia~GG 158 (205)
T 1wa3_A 88 VSPHLDEEISQFCKEKGVFYMP-GVMTPTELVKAMKLGHTILKLFP--G-----EVVGPQFVKAMKGPFP-NVKFVPTGG 158 (205)
T ss_dssp ECSSCCHHHHHHHHHHTCEEEC-EECSHHHHHHHHHTTCCEEEETT--H-----HHHHHHHHHHHHTTCT-TCEEEEBSS
T ss_pred EcCCCCHHHHHHHHHcCCcEEC-CcCCHHHHHHHHHcCCCEEEEcC--c-----cccCHHHHHHHHHhCC-CCcEEEcCC
Confidence 2 232 222346788876 66788888899999999887742 1 1123455666655443 799999999
Q ss_pred CCCHHHHHHHHHcCCCEEEechHHHH
Q 017718 286 VRRGTDVFKALALGASGIFIGRPVVY 311 (367)
Q Consensus 286 I~~~~dv~kal~lGAd~V~ig~~~l~ 311 (367)
|. .+++.+++.+|||+|.+||.++.
T Consensus 159 I~-~~~~~~~~~~Ga~~v~vGs~i~~ 183 (205)
T 1wa3_A 159 VN-LDNVCEWFKAGVLAVGVGSALVK 183 (205)
T ss_dssp CC-TTTHHHHHHHTCSCEEECHHHHC
T ss_pred CC-HHHHHHHHHCCCCEEEECccccC
Confidence 96 78999999999999999998764
|
| >4adt_A Pyridoxine biosynthetic enzyme PDX1 homologue, PU; transferase, pyridoxal 5-phosphate biosynthesis; 2.42A {Plasmodium berghei} PDB: 4adu_A* 4ads_A | Back alignment and structure |
|---|
Probab=98.67 E-value=2.4e-08 Score=94.75 Aligned_cols=112 Identities=21% Similarity=0.254 Sum_probs=81.8
Q ss_pred cCCCEEEEecCCHHHHHHHHHcCCcEEEEcCCCCCCC-----------------------CC-------ccchHHHHHHH
Q 017718 221 TKLPILVKGVLTAEDARIAVQAGAAGIIVSNHGARQL-----------------------DY-------VPATIMALEEV 270 (367)
Q Consensus 221 ~~~Pv~vK~v~~~~~a~~~~~~G~d~i~vs~~gg~~~-----------------------~~-------~~~~~~~l~~i 270 (367)
.++++++ .+.+.+++.++.+.|+|.|.+.|.+|+.- +. ...+++.++++
T Consensus 124 ~g~~vvv-~v~~~~Ea~~a~~~Gad~I~v~g~~gTG~~~~~v~h~~~~~~eir~l~~~~~d~L~t~~~~~~~~~~ll~~i 202 (297)
T 4adt_A 124 FKTPFVC-GCTNLGEALRRISEGASMIRTKGEAGTGNIIEAIKHIRTVNNEIKYLCSLDESEVYNFAKKLRAPIDLILLT 202 (297)
T ss_dssp CSSCEEE-EESSHHHHHHHHHHTCSEEEECCCTTSCCCHHHHHHHHHHHHHHHHHHHSCTTTHHHHHHHHTCCHHHHHHH
T ss_pred CCCeEEE-EeCCHHHHHHHHhCCCCEEEECCCcCCCchHHHHHHHHHhhhhhhhhccccccccccccccCCCCHHHHHHH
Confidence 4678866 68899999999999999999987655431 01 13457788888
Q ss_pred HHHhcCCCcEE--EecCCCCHHHHHHHHHcCCCEEEechHHHHHhhccChHHHHHHHHHHHHHHHHHHHHhCC
Q 017718 271 VKATQGRIPVF--LDGGVRRGTDVFKALALGASGIFIGRPVVYSLAAEGEKGVRRVLEMLREEFELAMALSGC 341 (367)
Q Consensus 271 ~~~~~~~~~vi--a~GGI~~~~dv~kal~lGAd~V~ig~~~l~~l~~~G~~~v~~~i~~l~~el~~~m~~~G~ 341 (367)
.+.+ ++||+ +.|||++++|+.+++.+|||+|++|+.++.+ ..+ ...++.+++.+..++...++
T Consensus 203 ~~~~--~iPVivvA~GGI~t~~dv~~~~~~GAdgVlVGsai~~a---~dp---~~~~~~l~~ai~~~~~~~~~ 267 (297)
T 4adt_A 203 RKLK--RLPVVNFAAGGIATPADAAMCMQLGMDGVFVGSGIFES---ENP---QKMASSIVMAVSNFNNPKIL 267 (297)
T ss_dssp HHHT--SCSSEEEEESCCCSHHHHHHHHHTTCSCEEESHHHHTS---SCH---HHHHHHHHHHHHTTTCHHHH
T ss_pred HHhc--CCCeEEEecCCCCCHHHHHHHHHcCCCEEEEhHHHHcC---CCH---HHHHHHHHHHHHhhCCHHHH
Confidence 8776 57776 9999999999999999999999999988752 122 23455555555544444443
|
| >3tsm_A IGPS, indole-3-glycerol phosphate synthase; structural genomics, ssgcid, seattle structural GE center for infectious disease, lyase; 2.15A {Brucella melitensis} SCOP: c.1.2.0 | Back alignment and structure |
|---|
Probab=98.66 E-value=4.5e-07 Score=84.94 Aligned_cols=87 Identities=15% Similarity=0.211 Sum_probs=69.2
Q ss_pred cCCCEEEEecCCHHHHHHHHHcCCcEEEEcCCCCCCCCCccchHHHHHHHHHHhcCCCcEEEecCCCCHHHHHHHHHcCC
Q 017718 221 TKLPILVKGVLTAEDARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGA 300 (367)
Q Consensus 221 ~~~Pv~vK~v~~~~~a~~~~~~G~d~i~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~~~via~GGI~~~~dv~kal~lGA 300 (367)
.++-+++ .+.+.++++++.++|+|.|-+.|...+++ ...++...++.+.++.++++|+.|||++++|+.++..+||
T Consensus 168 lGl~~lv-evh~~eEl~~A~~~ga~iIGinnr~l~t~---~~dl~~~~~L~~~ip~~~~vIaesGI~t~edv~~l~~~Ga 243 (272)
T 3tsm_A 168 LGMDALI-EVHDEAEMERALKLSSRLLGVNNRNLRSF---EVNLAVSERLAKMAPSDRLLVGESGIFTHEDCLRLEKSGI 243 (272)
T ss_dssp TTCEEEE-EECSHHHHHHHTTSCCSEEEEECBCTTTC---CBCTHHHHHHHHHSCTTSEEEEESSCCSHHHHHHHHTTTC
T ss_pred cCCeEEE-EeCCHHHHHHHHhcCCCEEEECCCCCccC---CCChHHHHHHHHhCCCCCcEEEECCCCCHHHHHHHHHcCC
Confidence 4665544 46788999999999999988866543332 2345556667677766799999999999999999999999
Q ss_pred CEEEechHHHH
Q 017718 301 SGIFIGRPVVY 311 (367)
Q Consensus 301 d~V~ig~~~l~ 311 (367)
|+|.||++++.
T Consensus 244 ~gvLVG~almr 254 (272)
T 3tsm_A 244 GTFLIGESLMR 254 (272)
T ss_dssp CEEEECHHHHT
T ss_pred CEEEEcHHHcC
Confidence 99999999985
|
| >1qop_A Tryptophan synthase alpha chain; lyase, carbon-oxygen lyase, tryptophan biosynthesis, pyridoxal phosphate; HET: IPL PLP; 1.4A {Salmonella typhimurium} SCOP: c.1.2.4 PDB: 1k8x_A* 1wbj_A* 2clk_A* 2j9z_A* 3cep_A* 1k8y_A* 1a5s_A* 1a50_A* 1c29_A* 1c8v_A* 1c9d_A* 1bks_A* 1cx9_A* 1fuy_A* 1cw2_A* 1k7e_A* 1k7f_A* 1k7x_A* 1k3u_A* 1k8z_A* ... | Back alignment and structure |
|---|
Probab=98.62 E-value=1.4e-06 Score=81.34 Aligned_cols=49 Identities=20% Similarity=0.285 Sum_probs=42.6
Q ss_pred HHHHHHHHHHhcCCCcEEEecCCCCHHHHHHHHHcCCCEEEechHHHHHhh
Q 017718 264 IMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFIGRPVVYSLA 314 (367)
Q Consensus 264 ~~~l~~i~~~~~~~~~via~GGI~~~~dv~kal~lGAd~V~ig~~~l~~l~ 314 (367)
.+.+.++++.. ++||+++|||++++++.+++..|||+|.+|+++.....
T Consensus 194 ~~~i~~lr~~~--~~pi~vggGI~t~e~~~~~~~agAD~vVVGSai~~~~~ 242 (268)
T 1qop_A 194 HHLIEKLKEYH--AAPALQGFGISSPEQVSAAVRAGAAGAISGSAIVKIIE 242 (268)
T ss_dssp HHHHHHHHHTT--CCCEEEESSCCSHHHHHHHHHTTCSEEEECHHHHHHHH
T ss_pred HHHHHHHHhcc--CCcEEEECCCCCHHHHHHHHHcCCCEEEEChHHhhhHh
Confidence 56777777655 79999999999999999999999999999999987643
|
| >3qja_A IGPS, indole-3-glycerol phosphate synthase; structural genomics, T structural genomics consortium, TBSGC, lyase; 1.29A {Mycobacterium tuberculosis} PDB: 3t40_A* 3t44_A* 3t55_A* 3t78_A* 4fb7_A* | Back alignment and structure |
|---|
Probab=98.62 E-value=3.1e-07 Score=86.19 Aligned_cols=88 Identities=23% Similarity=0.287 Sum_probs=69.1
Q ss_pred hcCCCEEEEecCCHHHHHHHHHcCCcEEEEcCCCCCCCCCccchHHHHHHHHHHhcCCCcEEEecCCCCHHHHHHHHHcC
Q 017718 220 ITKLPILVKGVLTAEDARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALG 299 (367)
Q Consensus 220 ~~~~Pv~vK~v~~~~~a~~~~~~G~d~i~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~~~via~GGI~~~~dv~kal~lG 299 (367)
.+++.+++ .+.+.++++.+.++|+|.|.+.|.- +..-...++.+.++.+.++.++|+++.|||++++|+.+++.+|
T Consensus 160 ~lGl~~lv-ev~t~ee~~~A~~~Gad~IGv~~r~---l~~~~~dl~~~~~l~~~v~~~~pvVaegGI~t~edv~~l~~~G 235 (272)
T 3qja_A 160 SLGMTALV-EVHTEQEADRALKAGAKVIGVNARD---LMTLDVDRDCFARIAPGLPSSVIRIAESGVRGTADLLAYAGAG 235 (272)
T ss_dssp HTTCEEEE-EESSHHHHHHHHHHTCSEEEEESBC---TTTCCBCTTHHHHHGGGSCTTSEEEEESCCCSHHHHHHHHHTT
T ss_pred HCCCcEEE-EcCCHHHHHHHHHCCCCEEEECCCc---ccccccCHHHHHHHHHhCcccCEEEEECCCCCHHHHHHHHHcC
Confidence 35777654 5678899999999999999997532 2222234455666666565579999999999999999999999
Q ss_pred CCEEEechHHHH
Q 017718 300 ASGIFIGRPVVY 311 (367)
Q Consensus 300 Ad~V~ig~~~l~ 311 (367)
||+|.||++++.
T Consensus 236 adgvlVGsal~~ 247 (272)
T 3qja_A 236 ADAVLVGEGLVT 247 (272)
T ss_dssp CSEEEECHHHHT
T ss_pred CCEEEEcHHHhC
Confidence 999999999975
|
| >1yxy_A Putative N-acetylmannosamine-6-phosphate 2-epimer; structural genomics, epimerase, PSI, structure initiative; 1.60A {Streptococcus pyogenes} SCOP: c.1.2.5 | Back alignment and structure |
|---|
Probab=98.59 E-value=2.3e-07 Score=84.69 Aligned_cols=91 Identities=20% Similarity=0.276 Sum_probs=68.7
Q ss_pred HHHhhc-CCCEEEEecCCHHHHHHHHHcCCcEE--EEcCCCCCCCCCccchHHHHHHHHHHhcCCCcEEEecCCCCHHHH
Q 017718 216 WLQTIT-KLPILVKGVLTAEDARIAVQAGAAGI--IVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDV 292 (367)
Q Consensus 216 ~l~~~~-~~Pv~vK~v~~~~~a~~~~~~G~d~i--~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~~~via~GGI~~~~dv 292 (367)
.+++.+ +.++++ .+.+.++++.+.++|+|+| .+.+..........+.++.++++++. ++||+++|||++.+|+
T Consensus 126 ~i~~~~~~~~v~~-~~~t~~ea~~a~~~Gad~i~~~v~g~~~~~~~~~~~~~~~i~~~~~~---~ipvia~GGI~s~~~~ 201 (234)
T 1yxy_A 126 QVKEKYPNQLLMA-DISTFDEGLVAHQAGIDFVGTTLSGYTPYSRQEAGPDVALIEALCKA---GIAVIAEGKIHSPEEA 201 (234)
T ss_dssp HHHHHCTTCEEEE-ECSSHHHHHHHHHTTCSEEECTTTTSSTTSCCSSSCCHHHHHHHHHT---TCCEEEESCCCSHHHH
T ss_pred HHHHhCCCCeEEE-eCCCHHHHHHHHHcCCCEEeeeccccCCCCcCCCCCCHHHHHHHHhC---CCCEEEECCCCCHHHH
Confidence 666655 566655 5678899999999999999 45432111111223467778877653 6999999999999999
Q ss_pred HHHHHcCCCEEEechHHH
Q 017718 293 FKALALGASGIFIGRPVV 310 (367)
Q Consensus 293 ~kal~lGAd~V~ig~~~l 310 (367)
.+++.+|||+|++||+++
T Consensus 202 ~~~~~~Gad~v~vGsal~ 219 (234)
T 1yxy_A 202 KKINDLGVAGIVVGGAIT 219 (234)
T ss_dssp HHHHTTCCSEEEECHHHH
T ss_pred HHHHHCCCCEEEEchHHh
Confidence 999999999999999875
|
| >2qjg_A Putative aldolase MJ0400; beta-alpha barrel, lyase; HET: F2P; 2.60A {Methanocaldococcus jannaschii} PDB: 2qjh_A 2qji_A | Back alignment and structure |
|---|
Probab=98.59 E-value=2.4e-07 Score=86.49 Aligned_cols=184 Identities=18% Similarity=0.175 Sum_probs=111.2
Q ss_pred eeeccceEeCcccchhccCChhhHHHHHHHHHcCCceeecCCCCCCHHHHHhhC-C-CceEEEEeecCC----H--HHHH
Q 017718 68 FKISMPIMIAPTAMQKMAHPEGEYATARAASAAGTIMTLSSWSTSSVEEVASTG-P-GIRFFQLYVYKD----R--NVVA 139 (367)
Q Consensus 68 ~~l~~Pi~iAPm~~~~l~~~~~e~~~a~aa~~~G~~~~vs~~~~~~~e~i~~~~-~-~~~~~QLy~~~d----~--~~~~ 139 (367)
..+..|+.++||.... + =..+++++.+.|+..++.+.. ..+.+.+.. . .+..+|+....+ . +...
T Consensus 30 ~~id~~~~l~p~~~~~--~---~~~~~~~~~~~g~~~i~~~~~--~~~~~~~~~~~~~~~~v~~~~~~~~~~d~~~~~~~ 102 (273)
T 2qjg_A 30 VPMDHGVSNGPIKGLI--D---IRKTVNDVAEGGANAVLLHKG--IVRHGHRGYGKDVGLIIHLSGGTAISPNPLKKVIV 102 (273)
T ss_dssp EECCHHHHHCSCTTSS--S---HHHHHHHHHHHTCSEEEECHH--HHHSCCCSSSCCCEEEEECEECCTTSSSTTCCEEC
T ss_pred EEcccccccCCCcchh--h---HHHHHHHHHhcCCCEEEeCHH--HHHHHHHhhcCCCCEEEEEcCCCcCCCCcccchHH
Confidence 4456677788874322 1 136899999999988764320 001011111 1 355667654321 1 1113
Q ss_pred HHHHHHHHcCCcEEE--EecCCCCCCchhHHhhhhcCCCCccccccccccccCccccccchhhHHHhhhccCccccHHHH
Q 017718 140 QLVRRAERAGFKAIA--LTVDTPRLGRREADIKNRFTLPPFLTLKNFQGLDLGKMDEANDSGLAAYVAGQIDRSLSWKWL 217 (367)
Q Consensus 140 ~~l~ra~~~G~~ai~--itvd~p~~g~r~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~l 217 (367)
+.++++.+.|++.+. ++..++. .+ ...+.+. ....+
T Consensus 103 ~~v~~a~~~Ga~~v~~~l~~~~~~--~~---------------------------------~~~~~~~-------~v~~~ 140 (273)
T 2qjg_A 103 TTVEEAIRMGADAVSIHVNVGSDE--DW---------------------------------EAYRDLG-------MIAET 140 (273)
T ss_dssp SCHHHHHHTTCSEEEEEEEETSTT--HH---------------------------------HHHHHHH-------HHHHH
T ss_pred HHHHHHHHcCCCEEEEEEecCCCC--HH---------------------------------HHHHHHH-------HHHHH
Confidence 457788889999994 4333321 00 0000000 11122
Q ss_pred HhhcCCCEEEEec---------CCH---HHH-HHHHHcCCcEEEEcCCCCCCCCCccchHHHHHHHHHHhcCCCcEEEec
Q 017718 218 QTITKLPILVKGV---------LTA---EDA-RIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDG 284 (367)
Q Consensus 218 ~~~~~~Pv~vK~v---------~~~---~~a-~~~~~~G~d~i~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~~~via~G 284 (367)
.+.+++|+++... .+. +++ +.+.++|+|+|.++. +..++.+.++.+.+ ++||++.|
T Consensus 141 ~~~~g~~viv~~~~~G~~l~~~~~~~~~~~~a~~a~~~Gad~i~~~~---------~~~~~~l~~i~~~~--~ipvva~G 209 (273)
T 2qjg_A 141 CEYWGMPLIAMMYPRGKHIQNERDPELVAHAARLGAELGADIVKTSY---------TGDIDSFRDVVKGC--PAPVVVAG 209 (273)
T ss_dssp HHHHTCCEEEEEEECSTTCSCTTCHHHHHHHHHHHHHTTCSEEEECC---------CSSHHHHHHHHHHC--SSCEEEEC
T ss_pred HHHcCCCEEEEeCCCCcccCCCCCHhHHHHHHHHHHHcCCCEEEECC---------CCCHHHHHHHHHhC--CCCEEEEe
Confidence 2246889888741 233 344 889999999999863 13577888888776 79999999
Q ss_pred CCCC--HHH----HHHHHHcCCCEEEechHHHH
Q 017718 285 GVRR--GTD----VFKALALGASGIFIGRPVVY 311 (367)
Q Consensus 285 GI~~--~~d----v~kal~lGAd~V~ig~~~l~ 311 (367)
||.+ .+| +.+++.+||++|.+||.++.
T Consensus 210 Gi~~~~~~~~~~~~~~~~~~Ga~gv~vg~~i~~ 242 (273)
T 2qjg_A 210 GPKTNTDEEFLQMIKDAMEAGAAGVAVGRNIFQ 242 (273)
T ss_dssp CSCCSSHHHHHHHHHHHHHHTCSEEECCHHHHT
T ss_pred CCCCCCHHHHHHHHHHHHHcCCcEEEeeHHhhC
Confidence 9995 778 55556799999999998864
|
| >2zbt_A Pyridoxal biosynthesis lyase PDXS; pyridoxine biosynthesis, structural genomics, NPPSFA; 1.65A {Thermus thermophilus} PDB: 2iss_A* | Back alignment and structure |
|---|
Probab=98.58 E-value=2.8e-08 Score=94.23 Aligned_cols=122 Identities=20% Similarity=0.245 Sum_probs=89.4
Q ss_pred CCCEEEEecCCHHHHHHHHHcCCcEEEEcCCCCCC---------------------CCC---------ccchHHHHHHHH
Q 017718 222 KLPILVKGVLTAEDARIAVQAGAAGIIVSNHGARQ---------------------LDY---------VPATIMALEEVV 271 (367)
Q Consensus 222 ~~Pv~vK~v~~~~~a~~~~~~G~d~i~vs~~gg~~---------------------~~~---------~~~~~~~l~~i~ 271 (367)
++++++. +.+++++..+.++|+|+|.+.+..+.. ... .+..++.+.+++
T Consensus 125 ~i~l~~~-v~~~~~~~~a~~~Gad~I~v~G~~~~g~~~e~~~~~~~~~~~i~~~~g~t~~~~~~~~~~~~~~~~~i~~l~ 203 (297)
T 2zbt_A 125 KVPFVCG-ARNLGEALRRIAEGAAMIRTKGEAGTGNVVEAVRHARTMWKEIRYVQSLREDELMAYAKEIGAPFELVKWVH 203 (297)
T ss_dssp SSCEEEE-ESSHHHHHHHHHTTCSEEEECCCSSSCCTHHHHHHHHHHHHHHHHHHHSCGGGHHHHHHHHTCCHHHHHHHH
T ss_pred CceEEee-cCCHHHHHHHHHcCCCEEEEcccccCcchHHHHhhHHHHHHHHHHcCCcCCCCchhhhhcchhhHHHHHHHH
Confidence 6777754 568888999999999999885310100 000 123456677777
Q ss_pred HHhcCCCcEE--EecCCCCHHHHHHHHHcCCCEEEechHHHHHhhccChHHHHHHHHHHHHHHHHHHHHhCCCChhhhcc
Q 017718 272 KATQGRIPVF--LDGGVRRGTDVFKALALGASGIFIGRPVVYSLAAEGEKGVRRVLEMLREEFELAMALSGCRSLKEITR 349 (367)
Q Consensus 272 ~~~~~~~~vi--a~GGI~~~~dv~kal~lGAd~V~ig~~~l~~l~~~G~~~v~~~i~~l~~el~~~m~~~G~~si~~l~~ 349 (367)
+.. ++|++ ++|||++++|+.+++.+|||+|++||.++.+ .. ....++.+++.++.++...++.++.++.+
T Consensus 204 ~~~--~~pvi~~a~GGI~~~e~i~~~~~aGadgvvvGsai~~~---~d---p~~~~~~l~~~i~~~~~~~~~~~~~~~~g 275 (297)
T 2zbt_A 204 DHG--RLPVVNFAAGGIATPADAALMMHLGMDGVFVGSGIFKS---GD---PRKRARAIVRAVAHYNDPEVLAEVSEDLG 275 (297)
T ss_dssp HHS--SCSSCEEBCSSCCSHHHHHHHHHTTCSEEEECGGGGGS---SC---HHHHHHHHHHHHHTTTCHHHHHHHHTTCC
T ss_pred Hhc--CCCcEEEeeCCCCCHHHHHHHHHcCCCEEEEchHHhCC---CC---HHHHHHHHHHHHHHHhchHhhhHHHHhcC
Confidence 765 68888 9999999999999999999999999988631 12 23566777777777777777788888887
Q ss_pred cce
Q 017718 350 DHI 352 (367)
Q Consensus 350 ~~l 352 (367)
..+
T Consensus 276 ~~~ 278 (297)
T 2zbt_A 276 EPM 278 (297)
T ss_dssp CCC
T ss_pred cee
Confidence 663
|
| >3nav_A Tryptophan synthase alpha chain; alpha subunit, structural genomics, CSG center for structural genomics of infectious diseases; 2.10A {Vibrio cholerae o1 biovar el tor} SCOP: c.1.2.4 | Back alignment and structure |
|---|
Probab=98.57 E-value=2.4e-06 Score=79.97 Aligned_cols=82 Identities=23% Similarity=0.268 Sum_probs=60.7
Q ss_pred CCHHHHHHHHHcCCcEEEE-cCCC--CCCCCCccchHHHHHHHHHHhcCCCcEEEecCCCCHHHHHHHHHcCCCEEEech
Q 017718 231 LTAEDARIAVQAGAAGIIV-SNHG--ARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFIGR 307 (367)
Q Consensus 231 ~~~~~a~~~~~~G~d~i~v-s~~g--g~~~~~~~~~~~~l~~i~~~~~~~~~via~GGI~~~~dv~kal~lGAd~V~ig~ 307 (367)
.+.+.++.+.+.+-++|.+ |..| |..........+.+.++++.. ++||++.+||++++++.+++..|||+|.+|+
T Consensus 161 t~~eri~~i~~~~~gfiY~vs~~GvTG~~~~~~~~~~~~v~~vr~~~--~~Pv~vGfGIst~e~~~~~~~~gADgvIVGS 238 (271)
T 3nav_A 161 ASDETLRAVAQLGKGYTYLLSRAGVTGAETKANMPVHALLERLQQFD--APPALLGFGISEPAQVKQAIEAGAAGAISGS 238 (271)
T ss_dssp CCHHHHHHHHHHCCSCEEECCCC--------CCHHHHHHHHHHHHTT--CCCEEECSSCCSHHHHHHHHHTTCSEEEESH
T ss_pred CCHHHHHHHHHHCCCeEEEEeccCCCCcccCCchhHHHHHHHHHHhc--CCCEEEECCCCCHHHHHHHHHcCCCEEEECH
Confidence 4567888888888888886 4333 221111223446777877765 7999999999999999999999999999999
Q ss_pred HHHHHhh
Q 017718 308 PVVYSLA 314 (367)
Q Consensus 308 ~~l~~l~ 314 (367)
+++..+.
T Consensus 239 Aiv~~i~ 245 (271)
T 3nav_A 239 AVVKIIE 245 (271)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 9987654
|
| >2yzr_A Pyridoxal biosynthesis lyase PDXS; redox protein, pyridoxal phosphate, structural genomi NPPSFA; 2.30A {Methanocaldococcus jannaschii} | Back alignment and structure |
|---|
Probab=98.54 E-value=1.2e-06 Score=83.49 Aligned_cols=45 Identities=38% Similarity=0.626 Sum_probs=39.2
Q ss_pred HHHHHHHHHhcCCCcE--EEecCCCCHHHHHHHHHcCCCEEEechHHHH
Q 017718 265 MALEEVVKATQGRIPV--FLDGGVRRGTDVFKALALGASGIFIGRPVVY 311 (367)
Q Consensus 265 ~~l~~i~~~~~~~~~v--ia~GGI~~~~dv~kal~lGAd~V~ig~~~l~ 311 (367)
+.|+++.+.. ++|| |+.|||.+++|+.+++.+|||+|+||+.++.
T Consensus 230 ell~~i~~~~--~IPVV~VAeGGI~Tpeda~~~l~~GaDgV~VGsaI~~ 276 (330)
T 2yzr_A 230 EVLLEVKKLG--RLPVVNFAAGGVATPADAALMMQLGSDGVFVGSGIFK 276 (330)
T ss_dssp HHHHHHHHHT--SCSSEEEECSCCCSHHHHHHHHHTTCSCEEESHHHHT
T ss_pred HHHHHHHHhC--CCCeEEEEECCCCCHHHHHHHHHcCcCEEeeHHHHhc
Confidence 6667776654 7888 6999999999999999999999999998874
|
| >4a3u_A NCR, NADH\:flavin oxidoreductase/NADH oxidase; HET: FMN; 1.70A {Zymomonas mobilis} | Back alignment and structure |
|---|
Probab=98.51 E-value=6.9e-06 Score=79.92 Aligned_cols=93 Identities=15% Similarity=0.009 Sum_probs=61.6
Q ss_pred HHHhhcC-CCEEEEecCC-----------H----HHHHHHHHcCCcEEEEcCCCCCCCCCccchHHHHHHHHHHhcCCCc
Q 017718 216 WLQTITK-LPILVKGVLT-----------A----EDARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIP 279 (367)
Q Consensus 216 ~l~~~~~-~Pv~vK~v~~-----------~----~~a~~~~~~G~d~i~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~~~ 279 (367)
.+|+.++ -+|.+|+..+ . ..++.+.+.|++.+.++...-..............++++.. ..|
T Consensus 211 avr~~vg~~~v~vRls~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~a~~ik~~~--~~~ 288 (358)
T 4a3u_A 211 RVIATIGKERTAVRLSPNGEIQGTVDSHPEQVFIPAAKMLSDLDIAFLGMREGAVDGTFGKTDQPKLSPEIRKVF--KPP 288 (358)
T ss_dssp HHHHHHCGGGEEEEECCSSCBTTBCCSSTHHHHHHHHHHHHHHTCSEEEEECCBTTCSSSBCSSCCCHHHHHHHC--CSC
T ss_pred HHHHHcCccceEEEeccCcccCCCcccchHHHHHHHHHhhhccCccccccccccccCcccccccHHHHHHHHHhc--CCc
Confidence 7777763 4688888621 1 23667788999999997522111111111112234555554 556
Q ss_pred EEEecCCCCHHHHHHHHHcC-CCEEEechHHHH
Q 017718 280 VFLDGGVRRGTDVFKALALG-ASGIFIGRPVVY 311 (367)
Q Consensus 280 via~GGI~~~~dv~kal~lG-Ad~V~ig~~~l~ 311 (367)
|+ .||+.+++.+.++|+-| ||+|.+||++|.
T Consensus 289 v~-~~g~~~~~~ae~~l~~G~aD~V~~gR~~la 320 (358)
T 4a3u_A 289 LV-LNQDYTFETAQAALDSGVADAISFGRPFIG 320 (358)
T ss_dssp EE-EESSCCHHHHHHHHHHTSCSEEEESHHHHH
T ss_pred EE-EeCCCCHHHHHHHHHcCCceEeHhhHHHHh
Confidence 65 57889999999999999 999999999985
|
| >2v82_A 2-dehydro-3-deoxy-6-phosphogalactonate aldolase; lyase, kdpgal; HET: KDP; 2.1A {Escherichia coli} PDB: 2v81_A* | Back alignment and structure |
|---|
Probab=98.51 E-value=7.2e-07 Score=80.09 Aligned_cols=109 Identities=16% Similarity=0.167 Sum_probs=75.7
Q ss_pred HhhcCCCEEEEecCCHHHHHHHHHcCCcEEEEcCCCCCCCCCccchHHHHHHHHHHhcCCCcEEEecCCCCHHHHHHHHH
Q 017718 218 QTITKLPILVKGVLTAEDARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALA 297 (367)
Q Consensus 218 ~~~~~~Pv~vK~v~~~~~a~~~~~~G~d~i~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~~~via~GGI~~~~dv~kal~ 297 (367)
++..+.++++. +.+++++..+.+.|+|+|.+.. + .+..++.+.++++.++.++||+++|||. .+++.+++.
T Consensus 97 ~~~~g~~~~~g-~~t~~e~~~a~~~G~d~v~v~~-t------~~~g~~~~~~l~~~~~~~ipvia~GGI~-~~~i~~~~~ 167 (212)
T 2v82_A 97 AVGYGMTVCPG-CATATEAFTALEAGAQALKIFP-S------SAFGPQYIKALKAVLPSDIAVFAVGGVT-PENLAQWID 167 (212)
T ss_dssp HHHTTCEEECE-ECSHHHHHHHHHTTCSEEEETT-H------HHHCHHHHHHHHTTSCTTCEEEEESSCC-TTTHHHHHH
T ss_pred HHHcCCCEEee-cCCHHHHHHHHHCCCCEEEEec-C------CCCCHHHHHHHHHhccCCCeEEEeCCCC-HHHHHHHHH
Confidence 34457776554 7889999999999999998832 1 1223566777766552259999999997 999999999
Q ss_pred cCCCEEEechHHHHHhhccChHHHHHHHHHHHHHHHHHHH
Q 017718 298 LGASGIFIGRPVVYSLAAEGEKGVRRVLEMLREEFELAMA 337 (367)
Q Consensus 298 lGAd~V~ig~~~l~~l~~~G~~~v~~~i~~l~~el~~~m~ 337 (367)
+||++|.+|+.++.+. +..+...+.++.+++.++...+
T Consensus 168 ~Ga~gv~vGsai~~~~--~~~~d~~~~~~~l~~~~~~~~~ 205 (212)
T 2v82_A 168 AGCAGAGLGSDLYRAG--QSVERTAQQAAAFVKAYREAVQ 205 (212)
T ss_dssp HTCSEEEECTTTCCTT--CCHHHHHHHHHHHHHHHHHHHH
T ss_pred cCCCEEEEChHHhCCC--CCHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999875320 0113344555556555554443
|
| >2nv1_A Pyridoxal biosynthesis lyase PDXS; (beta/alpha)8-barrel, synthase; 2.08A {Bacillus subtilis} PDB: 2nv2_A* 1znn_A | Back alignment and structure |
|---|
Probab=98.50 E-value=3.8e-08 Score=93.79 Aligned_cols=121 Identities=20% Similarity=0.283 Sum_probs=83.5
Q ss_pred cCCCEEEEecCCHHHHHHHHHcCCcEEEEcCCCCCC---------------------C--CC-------ccchHHHHHHH
Q 017718 221 TKLPILVKGVLTAEDARIAVQAGAAGIIVSNHGARQ---------------------L--DY-------VPATIMALEEV 270 (367)
Q Consensus 221 ~~~Pv~vK~v~~~~~a~~~~~~G~d~i~vs~~gg~~---------------------~--~~-------~~~~~~~l~~i 270 (367)
+++|+++ .+.+.+++.++.+.|+|+|.++|..|+. . +. .+..++.+.++
T Consensus 124 ~g~~v~~-~~~~~~e~~~a~~~Gad~V~~~G~~g~g~~~~~~~h~rt~~~~i~~l~gi~~~~~~~~~~~~~~~~~~i~~i 202 (305)
T 2nv1_A 124 YTVPFVC-GCRDLGEATRRIAEGASMLRTKGEPGTGNIVEAVRHMRKVNAQVRKVVAMSEDELMTEAKNLGAPYELLLQI 202 (305)
T ss_dssp CSSCEEE-EESSHHHHHHHHHTTCSEEEECCCTTSCCTHHHHHHHHHHHHHHHHHHHSCGGGHHHHHHHHTCCHHHHHHH
T ss_pred cCCcEEE-EeCCHHHHHHHHHCCCCEEEeccccCccchHHHHhhhhhhhccchhhccccchhhhcccccccccHHHHHHH
Confidence 4677765 6678888888899999999996422210 0 00 22356777777
Q ss_pred HHHhcCCCcEE--EecCCCCHHHHHHHHHcCCCEEEechHHHHHhhccChHHHHHHHHHHHHHHHHHHHHhCCCChhhhc
Q 017718 271 VKATQGRIPVF--LDGGVRRGTDVFKALALGASGIFIGRPVVYSLAAEGEKGVRRVLEMLREEFELAMALSGCRSLKEIT 348 (367)
Q Consensus 271 ~~~~~~~~~vi--a~GGI~~~~dv~kal~lGAd~V~ig~~~l~~l~~~G~~~v~~~i~~l~~el~~~m~~~G~~si~~l~ 348 (367)
.+.. ++||+ ++|||.+++|+.+++.+|||+|++||.++.. ..+ ...++.+++.+..++...+..++.++.
T Consensus 203 ~~~~--~iPvi~~a~GGI~~~~d~~~~~~~GadgV~vGsai~~~---~~p---~~~~~~l~~~~~~~~~~~~~~~~~~~~ 274 (305)
T 2nv1_A 203 KKDG--KLPVVNFAAGGVATPADAALMMQLGADGVFVGSGIFKS---DNP---AKFAKAIVEATTHFTDYKLIAELSKEL 274 (305)
T ss_dssp HHHT--SCSSCEEBCSCCCSHHHHHHHHHTTCSCEEECGGGGGS---SCH---HHHHHHHHHHHHTTTCHHHHHHHTSCC
T ss_pred HHhc--CCCEEEEeccCCCCHHHHHHHHHcCCCEEEEcHHHHcC---CCH---HHHHHHHHHHHHHhcChhhHHHHHHHh
Confidence 7765 78998 9999999999999999999999999988742 122 235556666666665555555555554
Q ss_pred cc
Q 017718 349 RD 350 (367)
Q Consensus 349 ~~ 350 (367)
+.
T Consensus 275 g~ 276 (305)
T 2nv1_A 275 GT 276 (305)
T ss_dssp --
T ss_pred hh
Confidence 43
|
| >3o07_A Pyridoxine biosynthesis protein SNZ1; (beta/alpha)8-barrel, pyridoxal 5-phosphate synthase, PLP G3 SNO1, biosynthetic protein; HET: 1GP; 1.80A {Saccharomyces cerevisiae} PDB: 3o06_A 3o05_A* 3fem_A | Back alignment and structure |
|---|
Probab=98.49 E-value=2.5e-07 Score=85.88 Aligned_cols=89 Identities=27% Similarity=0.444 Sum_probs=70.9
Q ss_pred hcCCCEEEEecCCHHHHHHHHHcCCcEEEEcCCCCCC---------------------C-C---------CccchHHHHH
Q 017718 220 ITKLPILVKGVLTAEDARIAVQAGAAGIIVSNHGARQ---------------------L-D---------YVPATIMALE 268 (367)
Q Consensus 220 ~~~~Pv~vK~v~~~~~a~~~~~~G~d~i~vs~~gg~~---------------------~-~---------~~~~~~~~l~ 268 (367)
..++|+ +.++.+.++|.++++.|+|.|-..+..|+. + + .-.++++.|.
T Consensus 113 ~f~vpf-v~~~~~l~EAlrri~eGA~mIrTtge~gtg~v~~av~h~r~~~~~i~~l~g~~t~~el~~~a~~~~ad~elI~ 191 (291)
T 3o07_A 113 KFKVPF-VCGAKDLGEALRRINEGAAMIRTKGEAGTGDVSEAVKHIRRITEEIKACQQLKSEDDIAKVAEEMRVPVSLLK 191 (291)
T ss_dssp GCSSCE-EEEESSHHHHHHHHHHTCSEEEECCCTTSCCTHHHHHHHHHHHHHHHHHHTCCCHHHHHHHHHHHTSCHHHHH
T ss_pred cCCCcE-EeeCCCHHHHHHHHHCCCCEEEecCcCCCccHHHHHHHHHHHHHHHHHHHcCCCHHHhhhcccccCCCHHHHH
Confidence 357777 568899999999999999999987553331 1 0 0134678899
Q ss_pred HHHHHhcCCCcE--EEecCCCCHHHHHHHHHcCCCEEEechHHHH
Q 017718 269 EVVKATQGRIPV--FLDGGVRRGTDVFKALALGASGIFIGRPVVY 311 (367)
Q Consensus 269 ~i~~~~~~~~~v--ia~GGI~~~~dv~kal~lGAd~V~ig~~~l~ 311 (367)
++++.. ++|| |++|||.|++|+.+++.+|||+|++||.++.
T Consensus 192 ~Ike~~--~IPVV~IAnGGI~TpedA~~~le~GaDGVmVGrAI~~ 234 (291)
T 3o07_A 192 DVLEKG--KLPVVNFAAGGVATPADAALLMQLGCDGVFVGSGIFK 234 (291)
T ss_dssp HHHHHT--SCSSCEEBCSSCCSHHHHHHHHHTTCSCEEECGGGGG
T ss_pred HHHHcc--CCCEEEecCCCCCCHHHHHHHHHhCCCEEEEchHHhC
Confidence 988875 7888 5699999999999999999999999997754
|
| >3oa3_A Aldolase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, pathogenic fungus; 1.60A {Coccidioides immitis} | Back alignment and structure |
|---|
Probab=98.49 E-value=3.7e-06 Score=78.89 Aligned_cols=91 Identities=22% Similarity=0.240 Sum_probs=63.7
Q ss_pred HHHHhhcCCCEEEEec-----CCHHH----HHHHHHcCCcEEEEcCCCCCCCCCccchHHHHHHHHHHhcCCCcEEEecC
Q 017718 215 KWLQTITKLPILVKGV-----LTAED----ARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGG 285 (367)
Q Consensus 215 ~~l~~~~~~Pv~vK~v-----~~~~~----a~~~~~~G~d~i~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~~~via~GG 285 (367)
..+++..+-| ++|.+ .+.++ ++.+.++|+|+|-.| +|-......+.....++++.+..+.+++|.++||
T Consensus 165 ~~V~~a~~~~-~lKVIlEt~~Lt~eei~~A~~ia~eaGADfVKTS-TGf~~~GAT~edv~lmr~~v~~~g~~v~VKAAGG 242 (288)
T 3oa3_A 165 RAVRLAAKDA-ILKVILETSQLTADEIIAGCVLSSLAGADYVKTS-TGFNGPGASIENVSLMSAVCDSLQSETRVKASGG 242 (288)
T ss_dssp HHHHHHTTTS-EEEEECCGGGCCHHHHHHHHHHHHHTTCSEEECC-CSSSSCCCCHHHHHHHHHHHHHSSSCCEEEEESS
T ss_pred HHHHHHhcCC-CceEEEECCCCCHHHHHHHHHHHHHcCCCEEEcC-CCCCCCCCCHHHHHHHHHHHHHhCCCceEEEeCC
Confidence 3666665556 47876 34455 678899999999987 3321111123355556666554456899999999
Q ss_pred CCCHHHHHHHHHcCCCEEEech
Q 017718 286 VRRGTDVFKALALGASGIFIGR 307 (367)
Q Consensus 286 I~~~~dv~kal~lGAd~V~ig~ 307 (367)
|++.+|+++++.+||+.++..+
T Consensus 243 Irt~edAl~mi~aGA~RiGtS~ 264 (288)
T 3oa3_A 243 IRTIEDCVKMVRAGAERLGASA 264 (288)
T ss_dssp CCSHHHHHHHHHTTCSEEEESC
T ss_pred CCCHHHHHHHHHcCCceeehhh
Confidence 9999999999999999665544
|
| >3vnd_A TSA, tryptophan synthase alpha chain; psychrophilic enzyme, cold adaptation; HET: PE8; 2.60A {Shewanella frigidimarina} | Back alignment and structure |
|---|
Probab=98.47 E-value=5.9e-06 Score=77.20 Aligned_cols=82 Identities=20% Similarity=0.242 Sum_probs=60.4
Q ss_pred CCHHHHHHHHHcCCcEEEE-cCCCCCCCCC--ccchHHHHHHHHHHhcCCCcEEEecCCCCHHHHHHHHHcCCCEEEech
Q 017718 231 LTAEDARIAVQAGAAGIIV-SNHGARQLDY--VPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFIGR 307 (367)
Q Consensus 231 ~~~~~a~~~~~~G~d~i~v-s~~gg~~~~~--~~~~~~~l~~i~~~~~~~~~via~GGI~~~~dv~kal~lGAd~V~ig~ 307 (367)
.+.+..+.+.+.+-++|.+ |..|.+.... .....+.+.++++.. ++||++.|||++++++.+++..|||+|.+|+
T Consensus 159 t~~eri~~i~~~~~gfvY~vS~~GvTG~~~~~~~~~~~~v~~vr~~~--~~pv~vGfGI~~~e~~~~~~~~gADgvVVGS 236 (267)
T 3vnd_A 159 ADADTLKMVSEQGEGYTYLLSRAGVTGTESKAGEPIENILTQLAEFN--APPPLLGFGIAEPEQVRAAIKAGAAGAISGS 236 (267)
T ss_dssp CCHHHHHHHHHHCCSCEEESCCCCCC--------CHHHHHHHHHTTT--CCCEEECSSCCSHHHHHHHHHTTCSEEEECH
T ss_pred CCHHHHHHHHHhCCCcEEEEecCCCCCCccCCcHHHHHHHHHHHHhc--CCCEEEECCcCCHHHHHHHHHcCCCEEEECH
Confidence 4567788888887777776 4444332211 233456777777654 7999999999999999999999999999999
Q ss_pred HHHHHhh
Q 017718 308 PVVYSLA 314 (367)
Q Consensus 308 ~~l~~l~ 314 (367)
+++..+.
T Consensus 237 aiv~~i~ 243 (267)
T 3vnd_A 237 AVVKIIE 243 (267)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 9987654
|
| >1ka9_F Imidazole glycerol phosphtate synthase; riken structural genomics/proteomics initiative, RSGI, structural genomics, transferase; 2.30A {Thermus thermophilus} SCOP: c.1.2.1 | Back alignment and structure |
|---|
Probab=98.45 E-value=8.1e-07 Score=81.70 Aligned_cols=76 Identities=21% Similarity=0.253 Sum_probs=62.2
Q ss_pred HHHHHHHHHcCCcEEEEcCCCCCCCCCccchHHHHHHHHHHhcCCCcEEEecCCCCHHHHHHHHHcCCCEEEechHHHH
Q 017718 233 AEDARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFIGRPVVY 311 (367)
Q Consensus 233 ~~~a~~~~~~G~d~i~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~~~via~GGI~~~~dv~kal~lGAd~V~ig~~~l~ 311 (367)
.+.++.+.+.|++.|.+.+.+..+...++ .++.+.++++.+ ++|||++|||++.+|+.+++.+|||+|++|++++.
T Consensus 155 ~e~~~~~~~~G~~~i~~~~~~~~g~~~g~-~~~~i~~l~~~~--~ipvia~GGI~~~~d~~~~~~~Gadgv~vgsal~~ 230 (252)
T 1ka9_F 155 VEWAVKGVELGAGEILLTSMDRDGTKEGY-DLRLTRMVAEAV--GVPVIASGGAGRMEHFLEAFQAGAEAALAASVFHF 230 (252)
T ss_dssp HHHHHHHHHHTCCEEEEEETTTTTTCSCC-CHHHHHHHHHHC--SSCEEEESCCCSHHHHHHHHHTTCSEEEESHHHHT
T ss_pred HHHHHHHHHcCCCEEEEecccCCCCcCCC-CHHHHHHHHHHc--CCCEEEeCCCCCHHHHHHHHHCCCHHHHHHHHHHc
Confidence 57789999999999998632211122233 688899998877 89999999999999999999999999999999875
|
| >1rd5_A Tryptophan synthase alpha chain, chloroplast; hydroxamic acid, diboa, dimboa, indole, indole-glycerol-PHOS lyase; 2.02A {Zea mays} SCOP: c.1.2.4 PDB: 1tjr_A | Back alignment and structure |
|---|
Probab=98.44 E-value=9.8e-06 Score=75.18 Aligned_cols=112 Identities=20% Similarity=0.257 Sum_probs=72.4
Q ss_pred cCCCEEEEec--CCHHHHHHHHHcCCcEEEEcCCCC---CCCCCccchHHHHHHHHHHhcCCCcEEEecCCCCHHHHHHH
Q 017718 221 TKLPILVKGV--LTAEDARIAVQAGAAGIIVSNHGA---RQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKA 295 (367)
Q Consensus 221 ~~~Pv~vK~v--~~~~~a~~~~~~G~d~i~vs~~gg---~~~~~~~~~~~~l~~i~~~~~~~~~via~GGI~~~~dv~ka 295 (367)
.++++++-.. .+.+.++.+.+.+.+++.+....| ......+...+.+.++++.. ++||++.|||.+++++.++
T Consensus 142 ~g~~~i~~~a~~t~~e~~~~~~~~~~g~v~~~s~~G~tG~~~~~~~~~~~~i~~v~~~~--~~pI~vgGGI~~~e~~~~~ 219 (262)
T 1rd5_A 142 NNLELVLLTTPAIPEDRMKEITKASEGFVYLVSVNGVTGPRANVNPRVESLIQEVKKVT--NKPVAVGFGISKPEHVKQI 219 (262)
T ss_dssp TTCEECEEECTTSCHHHHHHHHHHCCSCEEEECSSCCBCTTSCBCTHHHHHHHHHHHHC--SSCEEEESCCCSHHHHHHH
T ss_pred cCCceEEEECCCCCHHHHHHHHhcCCCeEEEecCCCCCCCCcCCCchHHHHHHHHHhhc--CCeEEEECCcCCHHHHHHH
Confidence 3555444333 445666676777766665533333 21122234567788888766 7999999999999999999
Q ss_pred HHcCCCEEEechHHHHHhhc-cChHHHHHHHHHHHHHHHH
Q 017718 296 LALGASGIFIGRPVVYSLAA-EGEKGVRRVLEMLREEFEL 334 (367)
Q Consensus 296 l~lGAd~V~ig~~~l~~l~~-~G~~~v~~~i~~l~~el~~ 334 (367)
+.+|||+|.+|++++..... ..+....+.+..+.++|+.
T Consensus 220 ~~~GAdgvvVGSai~~~~~~~~~~~~~~~~~~~~~~~l~~ 259 (262)
T 1rd5_A 220 AQWGADGVIIGSAMVRQLGEAASPKQGLRRLEEYARGMKN 259 (262)
T ss_dssp HHTTCSEEEECHHHHHHHHSSSSHHHHHHHHHHHHHHHHH
T ss_pred HHcCCCEEEEChHHHhHHHhccChhHHHHHHHHHHHHHHH
Confidence 99999999999999876532 1222222344555555543
|
| >1yad_A Regulatory protein TENI; TIM barrel, transcription; 2.10A {Bacillus subtilis} PDB: 3qh2_A* | Back alignment and structure |
|---|
Probab=98.44 E-value=2.5e-06 Score=77.10 Aligned_cols=80 Identities=19% Similarity=0.180 Sum_probs=61.8
Q ss_pred ecCCHHHHHHHHHcCCcEEEEcCCCCCC-CCC-ccchHHHHHHHHHHhcCCCcEEEecCCCCHHHHHHHHHcCCCEEEec
Q 017718 229 GVLTAEDARIAVQAGAAGIIVSNHGARQ-LDY-VPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFIG 306 (367)
Q Consensus 229 ~v~~~~~a~~~~~~G~d~i~vs~~gg~~-~~~-~~~~~~~l~~i~~~~~~~~~via~GGI~~~~dv~kal~lGAd~V~ig 306 (367)
.+.+.++++.+.+.|+|+|.+++..+++ ..+ .+..++.++++.+.. ++||+++||| +++++.+++.+||++|.+|
T Consensus 116 sv~t~~~~~~a~~~gaD~i~~~~~f~~~~~~g~~~~~~~~l~~~~~~~--~~pvia~GGI-~~~nv~~~~~~Ga~gv~vg 192 (221)
T 1yad_A 116 SVHSLEEAVQAEKEDADYVLFGHVFETDCKKGLEGRGVSLLSDIKQRI--SIPVIAIGGM-TPDRLRDVKQAGADGIAVM 192 (221)
T ss_dssp EECSHHHHHHHHHTTCSEEEEECCC----------CHHHHHHHHHHHC--CSCEEEESSC-CGGGHHHHHHTTCSEEEES
T ss_pred EcCCHHHHHHHHhCCCCEEEECCccccCCCCCCCCCCHHHHHHHHHhC--CCCEEEECCC-CHHHHHHHHHcCCCEEEEh
Confidence 3468899999999999999986532222 112 134577788887765 7999999999 9999999999999999999
Q ss_pred hHHHH
Q 017718 307 RPVVY 311 (367)
Q Consensus 307 ~~~l~ 311 (367)
+.++.
T Consensus 193 s~i~~ 197 (221)
T 1yad_A 193 SGIFS 197 (221)
T ss_dssp HHHHT
T ss_pred HHhhC
Confidence 98864
|
| >1h5y_A HISF; histidine biosynthesis, TIM-barrel; 2.0A {Pyrobaculum aerophilum} SCOP: c.1.2.1 | Back alignment and structure |
|---|
Probab=98.43 E-value=1.2e-06 Score=79.81 Aligned_cols=76 Identities=21% Similarity=0.322 Sum_probs=60.4
Q ss_pred HHHHHHHHHcCCcEEEEcCCCCCCCCCccchHHHHHHHHHHhcCCCcEEEecCCCCHHHHHHHHHcCCCEEEechHHHH
Q 017718 233 AEDARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFIGRPVVY 311 (367)
Q Consensus 233 ~~~a~~~~~~G~d~i~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~~~via~GGI~~~~dv~kal~lGAd~V~ig~~~l~ 311 (367)
.+.++.+.+.|+|.|.+.+........+ ..++.+.++++.. ++||+++|||.+.+|+.+++.+|||+|++||.++.
T Consensus 157 ~e~~~~~~~~G~d~i~~~~~~~~g~~~~-~~~~~i~~l~~~~--~~pvia~GGi~~~~~~~~~~~~Ga~~v~vgsal~~ 232 (253)
T 1h5y_A 157 VKWAKEVEELGAGEILLTSIDRDGTGLG-YDVELIRRVADSV--RIPVIASGGAGRVEHFYEAAAAGADAVLAASLFHF 232 (253)
T ss_dssp HHHHHHHHHHTCSEEEEEETTTTTTCSC-CCHHHHHHHHHHC--SSCEEEESCCCSHHHHHHHHHTTCSEEEESHHHHT
T ss_pred HHHHHHHHhCCCCEEEEecccCCCCcCc-CCHHHHHHHHHhc--CCCEEEeCCCCCHHHHHHHHHcCCcHHHHHHHHHc
Confidence 4668899999999999854211111112 3577888888766 79999999999999999999999999999998864
|
| >1geq_A Tryptophan synthase alpha-subunit; hyperthermophIle, pyrococ furiosus, X-RAY analysis, stability, calorimetry, lyase; 2.00A {Pyrococcus furiosus} SCOP: c.1.2.4 PDB: 1wdw_A* 2dzu_A 2dzp_A 2e09_A 2dzw_A 2dzs_A 2dzv_A 2dzt_A 2dzx_A | Back alignment and structure |
|---|
Probab=98.41 E-value=2.7e-06 Score=78.07 Aligned_cols=109 Identities=17% Similarity=0.220 Sum_probs=67.8
Q ss_pred cCCCEEEEec-CCHHHHHHHHHcCCc-EEEE-cCCC--CCCCCCccchHHHHHHHHHHhcCCCcEEEecCCCCHHHHHHH
Q 017718 221 TKLPILVKGV-LTAEDARIAVQAGAA-GIIV-SNHG--ARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKA 295 (367)
Q Consensus 221 ~~~Pv~vK~v-~~~~~a~~~~~~G~d-~i~v-s~~g--g~~~~~~~~~~~~l~~i~~~~~~~~~via~GGI~~~~dv~ka 295 (367)
.+..+++-.. .+..+.......++| .|.+ +-.| |......+...+.+.++++.. ++||+++|||++++++.++
T Consensus 132 ~g~~~~~~i~~~t~~e~~~~~~~~~d~~i~~~~~~G~~g~~~~~~~~~~~~i~~l~~~~--~~pi~~~GGI~~~e~i~~~ 209 (248)
T 1geq_A 132 EGIKTVFLAAPNTPDERLKVIDDMTTGFVYLVSLYGTTGAREEIPKTAYDLLRRAKRIC--RNKVAVGFGVSKREHVVSL 209 (248)
T ss_dssp HTCEEEEEECTTCCHHHHHHHHHHCSSEEEEECCC-------CCCHHHHHHHHHHHHHC--SSCEEEESCCCSHHHHHHH
T ss_pred hCCCeEEEECCCCHHHHHHHHHhcCCCeEEEEECCccCCCCCCCChhHHHHHHHHHhhc--CCCEEEEeecCCHHHHHHH
Confidence 4555555433 244444444444577 4433 2222 111111234577888888776 7999999999999999999
Q ss_pred HHcCCCEEEechHHHHHhhccChHHHHHHHHHHHHHH
Q 017718 296 LALGASGIFIGRPVVYSLAAEGEKGVRRVLEMLREEF 332 (367)
Q Consensus 296 l~lGAd~V~ig~~~l~~l~~~G~~~v~~~i~~l~~el 332 (367)
+.+|||+|.+|++++.....+. +.+.++++.+++.|
T Consensus 210 ~~~Gad~vivGsai~~~~~~~~-~~~~~~~~~~~~~~ 245 (248)
T 1geq_A 210 LKEGANGVVVGSALVKIIGEKG-REATEFLKKKVEEL 245 (248)
T ss_dssp HHTTCSEEEECHHHHHHHHHHG-GGCHHHHHHHHHHH
T ss_pred HHcCCCEEEEcHHHHhhHhhCh-HHHHHHHHHHHHHh
Confidence 9999999999999876532111 44555555555544
|
| >2ekc_A AQ_1548, tryptophan synthase alpha chain; structural genomics, lyase, NPPSFA, national project on PROT structural and functional analyses; 2.00A {Aquifex aeolicus} | Back alignment and structure |
|---|
Probab=98.40 E-value=9.6e-06 Score=75.51 Aligned_cols=61 Identities=18% Similarity=0.242 Sum_probs=45.0
Q ss_pred HHHHHHHHHhcCCCcEEEecCCCCHHHHHHHHHcCCCEEEechHHHHHhhccChHHHHHHHHHH
Q 017718 265 MALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFIGRPVVYSLAAEGEKGVRRVLEML 328 (367)
Q Consensus 265 ~~l~~i~~~~~~~~~via~GGI~~~~dv~kal~lGAd~V~ig~~~l~~l~~~G~~~v~~~i~~l 328 (367)
+.+.++++.. ++||++.+||++++++.+ +..|||+|.+||.+.........+.+.++++.+
T Consensus 196 ~~v~~vr~~~--~~pv~vG~GI~t~e~~~~-~~~gADgvIVGSai~~~~~~~~~~~~~~~~~~~ 256 (262)
T 2ekc_A 196 KKVEEYRELC--DKPVVVGFGVSKKEHARE-IGSFADGVVVGSALVKLAGQKKIEDLGNLVKEL 256 (262)
T ss_dssp HHHHHHHHHC--CSCEEEESSCCSHHHHHH-HHTTSSEEEECHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHhhc--CCCEEEeCCCCCHHHHHH-HHcCCCEEEECHHHHhhhhhhhHHHHHHHHHHH
Confidence 4566666654 799999999999999999 888999999999998764322233344443333
|
| >3ngj_A Deoxyribose-phosphate aldolase; lyase, structural genomics, structural genomics center for infectious disease, ssgcid; 1.70A {Entamoeba histolytica} | Back alignment and structure |
|---|
Probab=98.38 E-value=5.8e-06 Score=75.71 Aligned_cols=87 Identities=26% Similarity=0.240 Sum_probs=62.1
Q ss_pred HHHhhcCCCEEEEec-----CCHHH----HHHHHHcCCcEEEEcCCCCCCCCCccchHHHHHHHHHHhcCCCcEEEecCC
Q 017718 216 WLQTITKLPILVKGV-----LTAED----ARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGV 286 (367)
Q Consensus 216 ~l~~~~~~Pv~vK~v-----~~~~~----a~~~~~~G~d~i~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~~~via~GGI 286 (367)
.+++..+- ..+|.+ ++.+. ++.+.++|+|+|..|. | +..+..+++.+..+++.++.+++|-++|||
T Consensus 135 ~v~~a~~~-~~lKVIlEt~~Lt~eei~~a~~ia~~aGADfVKTST-G---f~~ggAt~~dv~lmr~~vg~~v~VKasGGI 209 (239)
T 3ngj_A 135 AVVDASGK-ALTKVIIECCYLTNEEKVEVCKRCVAAGAEYVKTST-G---FGTHGATPEDVKLMKDTVGDKALVKAAGGI 209 (239)
T ss_dssp HHHHHHTT-SEEEEECCGGGSCHHHHHHHHHHHHHHTCSEEECCC-S---SSSCCCCHHHHHHHHHHHGGGSEEEEESSC
T ss_pred HHHHHhcC-CceEEEEecCCCCHHHHHHHHHHHHHHCcCEEECCC-C---CCCCCCCHHHHHHHHHhhCCCceEEEeCCC
Confidence 55555542 256655 45544 4456899999999873 2 112334556665566666778999999999
Q ss_pred CCHHHHHHHHHcCCCEEEech
Q 017718 287 RRGTDVFKALALGASGIFIGR 307 (367)
Q Consensus 287 ~~~~dv~kal~lGAd~V~ig~ 307 (367)
|+.+|+++++.+||+.++..+
T Consensus 210 rt~~da~~~i~aGA~riGtS~ 230 (239)
T 3ngj_A 210 RTFDDAMKMINNGASRIGASA 230 (239)
T ss_dssp CSHHHHHHHHHTTEEEEEESC
T ss_pred CCHHHHHHHHHhcccceeccc
Confidence 999999999999999877665
|
| >1thf_D HISF protein; thermophIle, TIM-barrel, histidine biosynthesis, lyase, phosphate-binding sites; 1.45A {Thermotoga maritima} SCOP: c.1.2.1 PDB: 2wjz_A 2a0n_A* 1gpw_A 1vh7_A 2rkx_A 3iio_A 3iip_A* 3iiv_A | Back alignment and structure |
|---|
Probab=98.38 E-value=1e-06 Score=80.98 Aligned_cols=76 Identities=14% Similarity=0.177 Sum_probs=60.2
Q ss_pred HHHHHHHHHcCCcEEEEcCCCCCCCCCccchHHHHHHHHHHhcCCCcEEEecCCCCHHHHHHHHHcCCCEEEechHHHH
Q 017718 233 AEDARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFIGRPVVY 311 (367)
Q Consensus 233 ~~~a~~~~~~G~d~i~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~~~via~GGI~~~~dv~kal~lGAd~V~ig~~~l~ 311 (367)
.+.++.+.+.|++.|.+++........+ ..++.+.++++.+ ++|||++|||++.+|+.+++.+|||+|++|++++.
T Consensus 154 ~e~~~~~~~~G~~~i~~~~~~~~g~~~g-~~~~~~~~l~~~~--~ipvia~GGI~~~~d~~~~~~~Gadgv~vGsal~~ 229 (253)
T 1thf_D 154 RDWVVEVEKRGAGEILLTSIDRDGTKSG-YDTEMIRFVRPLT--TLPIIASGGAGKMEHFLEAFLAGADAALAASVFHF 229 (253)
T ss_dssp HHHHHHHHHTTCSEEEEEETTTTTSCSC-CCHHHHHHHGGGC--CSCEEEESCCCSHHHHHHHHHTTCSEEEESHHHHT
T ss_pred HHHHHHHHHCCCCEEEEEeccCCCCCCC-CCHHHHHHHHHhc--CCCEEEECCCCCHHHHHHHHHcCChHHHHHHHHHc
Confidence 4668999999999999853211111122 3678888887655 79999999999999999999999999999998875
|
| >3f4w_A Putative hexulose 6 phosphate synthase; humps, malonate, lyase; 1.65A {Salmonella typhimurium} SCOP: c.1.2.0 | Back alignment and structure |
|---|
Probab=98.36 E-value=7.1e-06 Score=73.31 Aligned_cols=88 Identities=20% Similarity=0.265 Sum_probs=64.0
Q ss_pred cCCCEEEEe--cCCH-HHHHHHHHcCCcEEEEcCCCCCCCCCccchHHHHHHHHHHhcCCCcEEEecCCCCHHHHHHHHH
Q 017718 221 TKLPILVKG--VLTA-EDARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALA 297 (367)
Q Consensus 221 ~~~Pv~vK~--v~~~-~~a~~~~~~G~d~i~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~~~via~GGI~~~~dv~kal~ 297 (367)
.++++++-. ..+. +.++.+.+.|+|+|.+.. |......++...+.+.++++.+. ++||+++|||+ ++++.+++.
T Consensus 102 ~g~~~~v~~~~~~t~~~~~~~~~~~g~d~i~v~~-g~~g~~~~~~~~~~i~~l~~~~~-~~~i~~~gGI~-~~~~~~~~~ 178 (211)
T 3f4w_A 102 AGKQVVVDMICVDDLPARVRLLEEAGADMLAVHT-GTDQQAAGRKPIDDLITMLKVRR-KARIAVAGGIS-SQTVKDYAL 178 (211)
T ss_dssp HTCEEEEECTTCSSHHHHHHHHHHHTCCEEEEEC-CHHHHHTTCCSHHHHHHHHHHCS-SCEEEEESSCC-TTTHHHHHT
T ss_pred cCCeEEEEecCCCCHHHHHHHHHHcCCCEEEEcC-CCcccccCCCCHHHHHHHHHHcC-CCcEEEECCCC-HHHHHHHHH
Confidence 466666532 2343 668999999999988752 21101112235677888877653 69999999996 999999999
Q ss_pred cCCCEEEechHHHH
Q 017718 298 LGASGIFIGRPVVY 311 (367)
Q Consensus 298 lGAd~V~ig~~~l~ 311 (367)
+|||+|.+||+++.
T Consensus 179 ~Gad~vvvGsai~~ 192 (211)
T 3f4w_A 179 LGPDVVIVGSAITH 192 (211)
T ss_dssp TCCSEEEECHHHHT
T ss_pred cCCCEEEECHHHcC
Confidence 99999999998764
|
| >2htm_A Thiazole biosynthesis protein THIG; thiamin biosynthesis, THIG, thermus thermophilus HB8, structural genomics, NPPSFA; 2.30A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=98.35 E-value=1.3e-06 Score=80.59 Aligned_cols=80 Identities=15% Similarity=0.153 Sum_probs=63.5
Q ss_pred ecCCHHHHHHHHHcCCcEEEEcCC-CCCCCCCccchHHHHHHHHHHhcCC-CcEEEecCCCCHHHHHHHHHcCCCEEEec
Q 017718 229 GVLTAEDARIAVQAGAAGIIVSNH-GARQLDYVPATIMALEEVVKATQGR-IPVFLDGGVRRGTDVFKALALGASGIFIG 306 (367)
Q Consensus 229 ~v~~~~~a~~~~~~G~d~i~vs~~-gg~~~~~~~~~~~~l~~i~~~~~~~-~~via~GGI~~~~dv~kal~lGAd~V~ig 306 (367)
...+++.++++.+.|+++|.--+. -|+ ..|..+.+.|..+++.. .+ +|||++|||.+++|+.+++.+|||+|++|
T Consensus 131 ~~~D~~~ak~l~~~G~~aVmPlg~pIGs--G~Gi~~~~~L~~i~~~~-~~~vPVI~~GGI~tpsDAa~AmeLGAdgVlVg 207 (268)
T 2htm_A 131 MGPDLVLAKRLAALGTATVMPLAAPIGS--GWGVRTRALLELFAREK-ASLPPVVVDAGLGLPSHAAEVMELGLDAVLVN 207 (268)
T ss_dssp ECSCHHHHHHHHHHTCSCBEEBSSSTTT--CCCSTTHHHHHHHHHTT-TTSSCBEEESCCCSHHHHHHHHHTTCCEEEES
T ss_pred cCCCHHHHHHHHhcCCCEEEecCccCcC--CcccCCHHHHHHHHHhc-CCCCeEEEeCCCCCHHHHHHHHHcCCCEEEEC
Confidence 357899999999999999966332 122 12455677788887622 26 99999999999999999999999999999
Q ss_pred hHHHH
Q 017718 307 RPVVY 311 (367)
Q Consensus 307 ~~~l~ 311 (367)
+.+..
T Consensus 208 SAI~~ 212 (268)
T 2htm_A 208 TAIAE 212 (268)
T ss_dssp HHHHT
T ss_pred hHHhC
Confidence 98864
|
| >2y88_A Phosphoribosyl isomerase A; aromatic amino acid biosynthesis, TIM-barrel, His biosynthesis, tryptophan biosynthesis; HET: 2ER; 1.33A {Mycobacterium tuberculosis} PDB: 2y89_A 2y85_A* | Back alignment and structure |
|---|
Probab=98.34 E-value=8.1e-07 Score=81.29 Aligned_cols=76 Identities=20% Similarity=0.225 Sum_probs=60.8
Q ss_pred HHHHHHHHHcCCcEEEEcCCCCCCCCCccchHHHHHHHHHHhcCCCcEEEecCCCCHHHHHHHHHc---CCCEEEechHH
Q 017718 233 AEDARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALAL---GASGIFIGRPV 309 (367)
Q Consensus 233 ~~~a~~~~~~G~d~i~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~~~via~GGI~~~~dv~kal~l---GAd~V~ig~~~ 309 (367)
.+.++.+.+.|++.|.+++....+...+ ..++.+.++++.+ ++|||++|||.+.+|+.+++.+ |||+|++||++
T Consensus 152 ~e~~~~~~~~G~~~i~~~~~~~~~~~~g-~~~~~~~~l~~~~--~ipvia~GGI~~~~d~~~~~~~~~~Gad~v~vG~al 228 (244)
T 2y88_A 152 WDVLERLDSEGCSRFVVTDITKDGTLGG-PNLDLLAGVADRT--DAPVIASGGVSSLDDLRAIATLTHRGVEGAIVGKAL 228 (244)
T ss_dssp HHHHHHHHHTTCCCEEEEETTTTTTTSC-CCHHHHHHHHTTC--SSCEEEESCCCSHHHHHHHHTTGGGTEEEEEECHHH
T ss_pred HHHHHHHHhCCCCEEEEEecCCccccCC-CCHHHHHHHHHhC--CCCEEEECCCCCHHHHHHHHhhccCCCCEEEEcHHH
Confidence 5778999999999999865211111123 3678888887655 7999999999999999999998 99999999998
Q ss_pred HH
Q 017718 310 VY 311 (367)
Q Consensus 310 l~ 311 (367)
+.
T Consensus 229 ~~ 230 (244)
T 2y88_A 229 YA 230 (244)
T ss_dssp HT
T ss_pred HC
Confidence 74
|
| >3tjl_A NADPH dehydrogenase; OLD yellow enzyme, flavin mononucleotide, TIM barrel, NADPH oxidoreductase, enone reductase; HET: FMN; 1.50A {Scheffersomyces stipitis cbs 6054} PDB: 3upw_A* 4df2_A* | Back alignment and structure |
|---|
Probab=98.33 E-value=9e-07 Score=87.37 Aligned_cols=95 Identities=18% Similarity=0.028 Sum_probs=65.3
Q ss_pred HHHHhhcC-CCEEEEecC-----------C--------HHHHHHH---HHcC--CcEEEEcCCCC-CCCCCccc-hHHHH
Q 017718 215 KWLQTITK-LPILVKGVL-----------T--------AEDARIA---VQAG--AAGIIVSNHGA-RQLDYVPA-TIMAL 267 (367)
Q Consensus 215 ~~l~~~~~-~Pv~vK~v~-----------~--------~~~a~~~---~~~G--~d~i~vs~~gg-~~~~~~~~-~~~~l 267 (367)
+.+|+.++ .||.+|+.. + .+.++.+ .+.| +|+|.|+.... .+.+..+. .+..+
T Consensus 226 ~av~~~~~~~~v~~r~~~~~~~~g~~~~~d~~~~~~~~~~l~~~L~~~~~~G~~l~ylhv~~~~~~~~~~~~~~~~~~~~ 305 (407)
T 3tjl_A 226 DHLSTIVGADKIGIRISPWATFQNMKAHKDTVHPLTTFSYLVHELQQRADKGQGIAYISVVEPRVSGNVDVSEEDQAGDN 305 (407)
T ss_dssp HHHHHHHCGGGEEEEECTTCCGGGCCGGGSSSCHHHHHHHHHHHHHHHHHTTCCCSEEEEECTTEETTEECCGGGCCCCS
T ss_pred HHHHHHhCCCeEEEEECcccccCCCcccccccccHHHHHHHHHHHHhHhhcCCceeEEEEEccccCCCCcCCccchhHHH
Confidence 37777775 489999873 2 1236677 7889 99999973111 11111111 11234
Q ss_pred HHHHHHhcCCCcEEEecCCCCHHHHHHHHHc---C-CCEEEechHHHH
Q 017718 268 EEVVKATQGRIPVFLDGGVRRGTDVFKALAL---G-ASGIFIGRPVVY 311 (367)
Q Consensus 268 ~~i~~~~~~~~~via~GGI~~~~dv~kal~l---G-Ad~V~ig~~~l~ 311 (367)
..+++.+ ++|||++|||.+.+|+.+++.. | ||+|++||+++.
T Consensus 306 ~~ir~~~--~~PvI~~Ggi~~~~dA~~~i~~~~~g~aDlVa~GR~~ia 351 (407)
T 3tjl_A 306 EFVSKIW--KGVILKAGNYSYDAPEFKTLKEDIADKRTLVGFSRYFTS 351 (407)
T ss_dssp HHHHHHC--CSEEEEESCGGGGTTTTHHHHHHHTTSSEEEECSHHHHH
T ss_pred HHHHHHh--CCCEEecCCCCCHHHHHHHHHhhccCCCeEEEeChhhhh
Confidence 5566666 6899999999999988888776 5 999999999985
|
| >2w6r_A Imidazole glycerol phosphate synthase subunit HISF; lyase, fusion protein, cobalamin, precorrin, novel fold, VIT; 2.10A {Thermotoga maritima} | Back alignment and structure |
|---|
Probab=98.32 E-value=8.7e-07 Score=82.19 Aligned_cols=76 Identities=14% Similarity=0.177 Sum_probs=59.8
Q ss_pred HHHHHHHHHcCCcEEEEcCCCCCCCCCccchHHHHHHHHHHhcCCCcEEEecCCCCHHHHHHHHHcCCCEEEechHHHH
Q 017718 233 AEDARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFIGRPVVY 311 (367)
Q Consensus 233 ~~~a~~~~~~G~d~i~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~~~via~GGI~~~~dv~kal~lGAd~V~ig~~~l~ 311 (367)
.+.++.+.+.|++.|.+++........+ ..++.+.++++.+ ++|||++|||++++|+.+++.+|||+|++|++++.
T Consensus 159 ~e~~~~~~~~G~~~i~~t~~~~~g~~~g-~~~~~i~~l~~~~--~ipvia~GGI~~~ed~~~~~~~Gadgv~vgsal~~ 234 (266)
T 2w6r_A 159 RDWVVEVEKRGAGEILLTSIDRDGTKSG-YDTEMIRFVRPLT--TLPIIASGGAGKMEHFLEAFLAGADAALAASVFHF 234 (266)
T ss_dssp HHHHHHHHHTTCSEEEEEETTTTTTCSC-CCHHHHHHHGGGC--CSCEEEESCCCSHHHHHHHHHHTCSEEEESTTTC-
T ss_pred HHHHHHHHHcCCCEEEEEeecCCCCcCC-CCHHHHHHHHHHc--CCCEEEeCCCCCHHHHHHHHHcCCHHHHccHHHHc
Confidence 4557899999999999854221111223 3578888887765 89999999999999999999999999999998865
|
| >1jvn_A Glutamine, bifunctional histidine biosynthesis protein hishf; substrate channeling, amidotransferase, TIM-barrel AS A SUBS tunnel; HET: 143; 2.10A {Saccharomyces cerevisiae} SCOP: c.1.2.1 c.23.16.1 PDB: 1ox4_B* 1ox5_A* 1ox6_A 1ox4_A | Back alignment and structure |
|---|
Probab=98.31 E-value=1.9e-06 Score=88.62 Aligned_cols=76 Identities=18% Similarity=0.118 Sum_probs=63.1
Q ss_pred HHHHHHHHHcCCcEEEEcCCCCCCCCCccchHHHHHHHHHHhcCCCcEEEecCCCCHHHHHHHHH-cCCCEEEechHHHH
Q 017718 233 AEDARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALA-LGASGIFIGRPVVY 311 (367)
Q Consensus 233 ~~~a~~~~~~G~d~i~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~~~via~GGI~~~~dv~kal~-lGAd~V~ig~~~l~ 311 (367)
.+.++.+.++|++.|++.+-..-+...| +.++.+.++.+.+ ++|||++|||.+.+|+.+++. +||++|++||+++.
T Consensus 455 ~e~a~~~~~~Ga~~il~t~~~~dG~~~G-~d~~li~~l~~~~--~iPVIasGGi~s~~d~~~~~~~~G~~gvivg~a~~~ 531 (555)
T 1jvn_A 455 WELTRACEALGAGEILLNCIDKDGSNSG-YDLELIEHVKDAV--KIPVIASSGAGVPEHFEEAFLKTRADACLGAGMFHR 531 (555)
T ss_dssp HHHHHHHHHTTCCEEEECCGGGTTTCSC-CCHHHHHHHHHHC--SSCEEECSCCCSHHHHHHHHHHSCCSEEEESHHHHT
T ss_pred HHHHHHHHHcCCCEEEEeCCCCCCCCCC-CCHHHHHHHHHhC--CccEEEECCCCCHHHHHHHHHhcCChHHHHHHHHHc
Confidence 5789999999999999854211112234 3799999998887 899999999999999999998 89999999998865
|
| >1qo2_A Molecule: N-((5-phosphoribosyl)-formimino)-5-aminoimidazol- 4-carboxamid ribonucleotid...; isomerase, histidine biosynthesis; 1.85A {Thermotoga maritima} SCOP: c.1.2.1 PDB: 2cff_A 2w79_A | Back alignment and structure |
|---|
Probab=98.30 E-value=8.6e-07 Score=81.21 Aligned_cols=75 Identities=13% Similarity=0.200 Sum_probs=61.4
Q ss_pred HHHHHHHHcCCcEEEEcCCCCCCCCCccchHHHHHHHHHHhcCCCcEEEecCCCCHHHHHHHHHc-----C-CCEEEech
Q 017718 234 EDARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALAL-----G-ASGIFIGR 307 (367)
Q Consensus 234 ~~a~~~~~~G~d~i~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~~~via~GGI~~~~dv~kal~l-----G-Ad~V~ig~ 307 (367)
+.++.+.+.|++.|.+++....+...+ +.++.+.++++.+ ++|||++|||++++|+.+++.+ | ||+|++|+
T Consensus 148 e~~~~~~~~G~~~i~~t~~~~~g~~~g-~~~~~i~~l~~~~--~iPvia~GGI~~~~d~~~~~~~~~~~~G~adgv~vgs 224 (241)
T 1qo2_A 148 SLLKRLKEYGLEEIVHTEIEKDGTLQE-HDFSLTKKIAIEA--EVKVLAAGGISSENSLKTAQKVHTETNGLLKGVIVGR 224 (241)
T ss_dssp HHHHHHHTTTCCEEEEEETTHHHHTCC-CCHHHHHHHHHHH--TCEEEEESSCCSHHHHHHHHHHHHHTTTSEEEEEECH
T ss_pred HHHHHHHhCCCCEEEEEeecccccCCc-CCHHHHHHHHHhc--CCcEEEECCCCCHHHHHHHHhcccccCCeEeEEEeeH
Confidence 447889999999999965321111123 3688899998887 8999999999999999999998 9 99999999
Q ss_pred HHHH
Q 017718 308 PVVY 311 (367)
Q Consensus 308 ~~l~ 311 (367)
+++.
T Consensus 225 al~~ 228 (241)
T 1qo2_A 225 AFLE 228 (241)
T ss_dssp HHHT
T ss_pred HHHc
Confidence 9975
|
| >1vc4_A Indole-3-glycerol phosphate synthase; lyase, tryptophan biosynthesis, riken structural genomics/PR initiative, RSGI, structural genomics; 1.80A {Thermus thermophilus} SCOP: c.1.2.4 | Back alignment and structure |
|---|
Probab=98.29 E-value=7.4e-06 Score=75.98 Aligned_cols=86 Identities=19% Similarity=0.212 Sum_probs=64.3
Q ss_pred cCCCEEEEecCCHHHHHHHHHcCCcEEEEcCCCCCCCCCccchHHHHHHHHHHhcC---CCcEEEecCCCCHHHHHHHHH
Q 017718 221 TKLPILVKGVLTAEDARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQG---RIPVFLDGGVRRGTDVFKALA 297 (367)
Q Consensus 221 ~~~Pv~vK~v~~~~~a~~~~~~G~d~i~vs~~gg~~~~~~~~~~~~l~~i~~~~~~---~~~via~GGI~~~~dv~kal~ 297 (367)
.++-+.+ .+.+.+++..+.+.|+|.|-+.|..-+.. ...++.+.++.+.++. ++|+++.|||.+++|+.+++.
T Consensus 153 lGl~~lv-ev~~~~E~~~a~~~gad~IGvn~~~l~~~---~~dl~~~~~L~~~i~~~~~~~~vIAegGI~s~~dv~~l~~ 228 (254)
T 1vc4_A 153 LGLEALV-EVHTERELEIALEAGAEVLGINNRDLATL---HINLETAPRLGRLARKRGFGGVLVAESGYSRKEELKALEG 228 (254)
T ss_dssp HTCEEEE-EECSHHHHHHHHHHTCSEEEEESBCTTTC---CBCTTHHHHHHHHHHHTTCCSEEEEESCCCSHHHHHTTTT
T ss_pred CCCeEEE-EECCHHHHHHHHHcCCCEEEEccccCcCC---CCCHHHHHHHHHhCccccCCCeEEEEcCCCCHHHHHHHHc
Confidence 4554433 34678888999999999998876543332 2234444555555543 689999999999999999999
Q ss_pred cCCCEEEechHHHH
Q 017718 298 LGASGIFIGRPVVY 311 (367)
Q Consensus 298 lGAd~V~ig~~~l~ 311 (367)
|||+|.||++++.
T Consensus 229 -Ga~gvlVGsAl~~ 241 (254)
T 1vc4_A 229 -LFDAVLIGTSLMR 241 (254)
T ss_dssp -TCSEEEECHHHHT
T ss_pred -CCCEEEEeHHHcC
Confidence 9999999999875
|
| >1vzw_A Phosphoribosyl isomerase A; histidine biosynthesis, tryptophan biosynthesis; 1.8A {Streptomyces coelicolor} SCOP: c.1.2.1 PDB: 2vep_A 2x30_A | Back alignment and structure |
|---|
Probab=98.27 E-value=1.3e-06 Score=80.01 Aligned_cols=74 Identities=24% Similarity=0.303 Sum_probs=59.6
Q ss_pred HHHHHHHHHcCCcEEEEcCC--CCCCCCCccchHHHHHHHHHHhcCCCcEEEecCCCCHHHHHHHHHc---CCCEEEech
Q 017718 233 AEDARIAVQAGAAGIIVSNH--GARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALAL---GASGIFIGR 307 (367)
Q Consensus 233 ~~~a~~~~~~G~d~i~vs~~--gg~~~~~~~~~~~~l~~i~~~~~~~~~via~GGI~~~~dv~kal~l---GAd~V~ig~ 307 (367)
.+.++.+.+.|++.|.+.+. +++ ..+ ..++.+.++++.+ ++||+++|||.+++|+.+++.+ |||+|++||
T Consensus 149 ~e~~~~~~~~G~~~i~~~~~~~~~~--~~g-~~~~~~~~i~~~~--~ipvia~GGI~~~~d~~~~~~~~~~Gadgv~vG~ 223 (244)
T 1vzw_A 149 YETLDRLNKEGCARYVVTDIAKDGT--LQG-PNLELLKNVCAAT--DRPVVASGGVSSLDDLRAIAGLVPAGVEGAIVGK 223 (244)
T ss_dssp HHHHHHHHHTTCCCEEEEEC---------C-CCHHHHHHHHHTC--SSCEEEESCCCSHHHHHHHHTTGGGTEEEEEECH
T ss_pred HHHHHHHHhCCCCEEEEeccCcccc--cCC-CCHHHHHHHHHhc--CCCEEEECCCCCHHHHHHHHhhccCCCceeeeeH
Confidence 45679999999999998642 221 112 3688888888766 7999999999999999999999 999999999
Q ss_pred HHHH
Q 017718 308 PVVY 311 (367)
Q Consensus 308 ~~l~ 311 (367)
+++.
T Consensus 224 al~~ 227 (244)
T 1vzw_A 224 ALYA 227 (244)
T ss_dssp HHHT
T ss_pred HHHc
Confidence 8874
|
| >3r12_A Deoxyribose-phosphate aldolase; TIM beta/alpha-barrel, structural genomics, joint center for structural genomics, JCSG; HET: MSE CIT; 1.75A {Thermotoga maritima} SCOP: c.1.10.1 PDB: 1o0y_A* 3r13_A* | Back alignment and structure |
|---|
Probab=98.26 E-value=2e-05 Score=72.92 Aligned_cols=87 Identities=25% Similarity=0.207 Sum_probs=62.7
Q ss_pred HHHhhcCCCEEEEec-----CCHHH----HHHHHHcCCcEEEEcCCCCCCCCCccchHHHHHHHHHHhcCCCcEEEecCC
Q 017718 216 WLQTITKLPILVKGV-----LTAED----ARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGV 286 (367)
Q Consensus 216 ~l~~~~~~Pv~vK~v-----~~~~~----a~~~~~~G~d~i~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~~~via~GGI 286 (367)
.+++..+ ...+|.+ ++.+. ++.+.++|+|+|-.|. | +..+..+.+.+..+++.++.+++|-++|||
T Consensus 151 ~v~~a~~-~~~lKVIlEt~~Lt~eei~~A~~ia~eaGADfVKTST-G---f~~~GAT~edV~lm~~~vg~~v~VKaAGGI 225 (260)
T 3r12_A 151 SVVESVK-GKVVKVIIETCYLDTEEKIAACVISKLAGAHFVKTST-G---FGTGGATAEDVHLMKWIVGDEMGVKASGGI 225 (260)
T ss_dssp HHHHHTT-TSEEEEECCGGGCCHHHHHHHHHHHHHTTCSEEECCC-S---SSSCCCCHHHHHHHHHHHCTTSEEEEESSC
T ss_pred HHHHhcC-CCcEEEEEeCCCCCHHHHHHHHHHHHHhCcCEEEcCC-C---CCCCCCCHHHHHHHHHHhCCCceEEEeCCC
Confidence 5555543 3345876 34333 5678899999999873 3 222335666666666667779999999999
Q ss_pred CCHHHHHHHHHcCCCEEEech
Q 017718 287 RRGTDVFKALALGASGIFIGR 307 (367)
Q Consensus 287 ~~~~dv~kal~lGAd~V~ig~ 307 (367)
++.+|+++++.+||+-++..+
T Consensus 226 rt~~~al~mi~aGA~RiGtS~ 246 (260)
T 3r12_A 226 RTFEDAVKMIMYGADRIGTSS 246 (260)
T ss_dssp CSHHHHHHHHHTTCSEEEESC
T ss_pred CCHHHHHHHHHcCCceeecch
Confidence 999999999999999765544
|
| >2p10_A MLL9387 protein; putative phosphonopyruvate hydrolase, structural genomics, J center for structural genomics, JCSG; HET: MSE; 2.15A {Mesorhizobium loti} SCOP: c.1.12.9 | Back alignment and structure |
|---|
Probab=98.26 E-value=4e-05 Score=71.40 Aligned_cols=209 Identities=16% Similarity=0.198 Sum_probs=119.5
Q ss_pred ccceEeCcccchhccCChhhHHHHHHHHHcCCceeecCC---------CCC------------CH---HHHHhhCC-Cce
Q 017718 71 SMPIMIAPTAMQKMAHPEGEYATARAASAAGTIMTLSSW---------STS------------SV---EEVASTGP-GIR 125 (367)
Q Consensus 71 ~~Pi~iAPm~~~~l~~~~~e~~~a~aa~~~G~~~~vs~~---------~~~------------~~---e~i~~~~~-~~~ 125 (367)
..|++-+..| .+ -.|+.+.+-|+.+.+--. ++. .+ +|+....+ .|.
T Consensus 27 ~~~iig~gaG-tG--------lsAk~~e~gGaDlii~ynsGrfR~~G~~slag~lpygnaN~iv~e~~~evlp~v~~iPV 97 (286)
T 2p10_A 27 GEPIIGGGAG-TG--------LSAKSEEAGDIDLIVIYNSGRYRMAGRGSLAGLLAYGNANQIVVDMAREVLPVVRHTPV 97 (286)
T ss_dssp TCCEEEEEES-SH--------HHHHHHHHTTCSEEEECHHHHHHHTTCCGGGGGBTEEEHHHHHHHHHHHHGGGCSSSCE
T ss_pred CCceEEEecc-cc--------hhhHHHHhCCCCEEEEeccchhhhcCccchhhhccccCHHHHHHHHHHhhhccCCCCCE
Confidence 3476655543 33 478999999999887311 110 01 13444333 589
Q ss_pred EEEEeecCCHH-HHHHHHHHHHHcCCcEEEEecCCCCCCchhHHhhhhcCCCCccccccccccccCccccccchhhHHHh
Q 017718 126 FFQLYVYKDRN-VVAQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLTLKNFQGLDLGKMDEANDSGLAAYV 204 (367)
Q Consensus 126 ~~QLy~~~d~~-~~~~~l~ra~~~G~~ai~itvd~p~~g~r~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 204 (367)
+.|+. ..|+. .+...++.++++||.++ + |.|..|.=.-..|+. +
T Consensus 98 ~Agv~-~~DP~~~~g~~Le~lk~~Gf~Gv-~--N~ptvglidG~fr~~-------------------------------L 142 (286)
T 2p10_A 98 LAGVN-GTDPFMVMSTFLRELKEIGFAGV-Q--NFPTVGLIDGLFRQN-------------------------------L 142 (286)
T ss_dssp EEEEC-TTCTTCCHHHHHHHHHHHTCCEE-E--ECSCGGGCCHHHHHH-------------------------------H
T ss_pred EEEEC-CcCCCcCHHHHHHHHHHhCCceE-E--ECCCcccccchhhhh-------------------------------H
Confidence 99965 44543 56667789999999998 4 445422111001100 0
Q ss_pred hhccCccccH----HHHHhhcC-CCEEEEecCCHHHHHHHHHcCCcEEEEcCC---CCC-CCCCccch---HHHHHHHHH
Q 017718 205 AGQIDRSLSW----KWLQTITK-LPILVKGVLTAEDARIAVQAGAAGIIVSNH---GAR-QLDYVPAT---IMALEEVVK 272 (367)
Q Consensus 205 ~~~~d~~~~~----~~l~~~~~-~Pv~vK~v~~~~~a~~~~~~G~d~i~vs~~---gg~-~~~~~~~~---~~~l~~i~~ 272 (367)
. +..+.+ +.+++... --+.+--+.++++|+.+.++|+|.|++.-. ||. ......+. .+.+.++.+
T Consensus 143 -E--E~gm~~~~eve~I~~A~~~gL~Ti~~v~~~eeA~amA~agpDiI~~h~glT~gglIG~~~avs~~~~~e~i~~i~~ 219 (286)
T 2p10_A 143 -E--ETGMSYAQEVEMIAEAHKLDLLTTPYVFSPEDAVAMAKAGADILVCHMGLTTGGAIGARSGKSMDDCVSLINECIE 219 (286)
T ss_dssp -H--HTTCCHHHHHHHHHHHHHTTCEECCEECSHHHHHHHHHHTCSEEEEECSCC---------CCCHHHHHHHHHHHHH
T ss_pred -h--hcCCCHHHHHHHHHHHHHCCCeEEEecCCHHHHHHHHHcCCCEEEECCCCCCCCcccCCCcccHHHhHHHHHHHHH
Confidence 0 111222 13333322 123333458999999999999999999421 121 01111122 334444443
Q ss_pred H---hcCCCcEEEec-CCCCHHHHHHHHHc--CCCEEEechHHHHHhhccChHHHHHHHHHHHHHHH
Q 017718 273 A---TQGRIPVFLDG-GVRRGTDVFKALAL--GASGIFIGRPVVYSLAAEGEKGVRRVLEMLREEFE 333 (367)
Q Consensus 273 ~---~~~~~~via~G-GI~~~~dv~kal~l--GAd~V~ig~~~l~~l~~~G~~~v~~~i~~l~~el~ 333 (367)
+ +..++.|+.-| ||.+++|+.+++.+ |++++..++.+... + ++..+..+.++++
T Consensus 220 a~~~vnpdvivLc~gGpIstpeDv~~~l~~t~G~~G~~gASsier~------p-~e~ai~~~~~~fk 279 (286)
T 2p10_A 220 AARTIRDDIIILSHGGPIANPEDARFILDSCQGCHGFYGASSMERL------P-AEEAIRSQTLAFK 279 (286)
T ss_dssp HHHHHCSCCEEEEESTTCCSHHHHHHHHHHCTTCCEEEESHHHHHH------H-HHHHHHHHHHHHH
T ss_pred HHHHhCCCcEEEecCCCCCCHHHHHHHHhcCCCccEEEeehhhhcC------C-HHHHHHHHHHHHH
Confidence 3 44467666655 99999999999999 99999999988764 1 3445555554443
|
| >1pii_A N-(5'phosphoribosyl)anthranilate isomerase; bifunctional(isomerase and synthase); 2.00A {Escherichia coli} SCOP: c.1.2.4 c.1.2.4 PDB: 1jcm_P* 2kzh_A | Back alignment and structure |
|---|
Probab=98.24 E-value=1.8e-05 Score=79.06 Aligned_cols=114 Identities=15% Similarity=0.218 Sum_probs=85.1
Q ss_pred cCCCEEEEecCCHHHHHHHHHcCCcEEEEcCCCCCCCCCccchHHHHHHHHHHhcCCCcEEEecCCCCHHHHHHHHHcCC
Q 017718 221 TKLPILVKGVLTAEDARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGA 300 (367)
Q Consensus 221 ~~~Pv~vK~v~~~~~a~~~~~~G~d~i~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~~~via~GGI~~~~dv~kal~lGA 300 (367)
.++-+++ .+.+.++++++.++|+|.|-+.|.+-++ -...++...++.+.++.++++|+.|||++++|+.++..+ |
T Consensus 156 lgm~~Lv-Evh~~eE~~~A~~lga~iIGinnr~L~t---~~~dl~~~~~L~~~ip~~~~vIaEsGI~t~edv~~~~~~-a 230 (452)
T 1pii_A 156 LEMGVLT-EVSNEEEQERAIALGAKVVGINNRDLRD---LSIDLNRTRELAPKLGHNVTVISESGINTYAQVRELSHF-A 230 (452)
T ss_dssp TTCEEEE-EECSHHHHHHHHHTTCSEEEEESEETTT---TEECTHHHHHHHHHHCTTSEEEEESCCCCHHHHHHHTTT-C
T ss_pred cCCeEEE-EeCCHHHHHHHHHCCCCEEEEeCCCCCC---CCCCHHHHHHHHHhCCCCCeEEEECCCCCHHHHHHHHHh-C
Confidence 4666654 6789999999999999999887754332 234466666666667667899999999999999999999 9
Q ss_pred CEEEechHHHHHhhccChHHHHHHHHHHHHHHHHHHHHhCCCChhhhc
Q 017718 301 SGIFIGRPVVYSLAAEGEKGVRRVLEMLREEFELAMALSGCRSLKEIT 348 (367)
Q Consensus 301 d~V~ig~~~l~~l~~~G~~~v~~~i~~l~~el~~~m~~~G~~si~~l~ 348 (367)
++|.||+.++.. +.....++.|.. .....||.++.+|+.
T Consensus 231 ~avLVGealmr~------~d~~~~~~~l~~---~~~KICGit~~eda~ 269 (452)
T 1pii_A 231 NGFLIGSALMAH------DDLHAAVRRVLL---GENKVCGLTRGQDAK 269 (452)
T ss_dssp SEEEECHHHHTC------SCHHHHHHHHHH---CSCEECCCCSHHHHH
T ss_pred CEEEEcHHHcCC------cCHHHHHHHHHH---HhccccCCCcHHHHH
Confidence 999999999853 112233333332 235688999988876
|
| >3ndo_A Deoxyribose-phosphate aldolase; ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, ALS collaborative crystallography; HET: GOL; 1.25A {Mycobacterium smegmatis} PDB: 3ng3_A | Back alignment and structure |
|---|
Probab=98.24 E-value=2.2e-05 Score=71.60 Aligned_cols=87 Identities=23% Similarity=0.288 Sum_probs=62.9
Q ss_pred HHHhhcCCCEEEEec-----C----CHHH----HHHHHHcCCcEEEEcCCCCCCCC-CccchHHHHHHHHHHhcCCCcEE
Q 017718 216 WLQTITKLPILVKGV-----L----TAED----ARIAVQAGAAGIIVSNHGARQLD-YVPATIMALEEVVKATQGRIPVF 281 (367)
Q Consensus 216 ~l~~~~~~Pv~vK~v-----~----~~~~----a~~~~~~G~d~i~vs~~gg~~~~-~~~~~~~~l~~i~~~~~~~~~vi 281 (367)
.+++..+ ...+|.+ + +.+. ++.+.++|+|+|-.|. | +. .+..+.+.+..+++.++.+++|-
T Consensus 120 ~v~~a~~-~~~lKvIiEt~~L~~~~t~eei~~a~~ia~~aGADfVKTST-G---f~~~~gAt~edv~lm~~~v~~~v~VK 194 (231)
T 3ndo_A 120 AVRKAVR-AATLKVIVESAALLEFSGEPLLADVCRVARDAGADFVKTST-G---FHPSGGASVQAVEIMARTVGERLGVK 194 (231)
T ss_dssp HHHHHTT-TSEEEEECCHHHHHHHTCHHHHHHHHHHHHHTTCSEEECCC-S---CCTTCSCCHHHHHHHHHHHTTTSEEE
T ss_pred HHHHHcc-CCceEEEEECcccCCCCCHHHHHHHHHHHHHHCcCEEEcCC-C---CCCCCCCCHHHHHHHHHHhCCCceEE
Confidence 5565554 3345876 3 4433 5678899999999873 2 11 23356666666667777799999
Q ss_pred EecCCCCHHHHHHHHHcCCCEEEech
Q 017718 282 LDGGVRRGTDVFKALALGASGIFIGR 307 (367)
Q Consensus 282 a~GGI~~~~dv~kal~lGAd~V~ig~ 307 (367)
++|||++.+|+++++.+||+-++..+
T Consensus 195 aaGGIrt~~~a~~~i~aGa~RiGtS~ 220 (231)
T 3ndo_A 195 ASGGIRTAEQAAAMLDAGATRLGLSG 220 (231)
T ss_dssp EESSCCSHHHHHHHHHTTCSEEEESS
T ss_pred EeCCCCCHHHHHHHHHhcchhcccch
Confidence 99999999999999999999665544
|
| >1ub3_A Aldolase protein; schiff base, deoxyribose phosphate, carbinolamine, structural genomics, riken structural genomics/proteomics initiative; HET: HPD; 1.40A {Thermus thermophilus} SCOP: c.1.10.1 PDB: 1j2w_A* | Back alignment and structure |
|---|
Probab=98.22 E-value=2.7e-05 Score=70.60 Aligned_cols=87 Identities=24% Similarity=0.342 Sum_probs=60.2
Q ss_pred HHHHHhhcCCCEEEEec-----CCHHH----HHHHHHcCCcEEEEcCCCCCCCCCccchHHHHHHHHHHhcCCCcEEEec
Q 017718 214 WKWLQTITKLPILVKGV-----LTAED----ARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDG 284 (367)
Q Consensus 214 ~~~l~~~~~~Pv~vK~v-----~~~~~----a~~~~~~G~d~i~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~~~via~G 284 (367)
+..+++..+-+ .+|.+ .+.+. ++.+.++|+|+|-.|. | +..+..+.+.+..+++.++.++||-++|
T Consensus 109 i~~v~~a~~~~-~lkvIlet~~l~~e~i~~a~~ia~eaGADfVKTsT-G---f~~~gat~~dv~~m~~~vg~~v~VkaaG 183 (220)
T 1ub3_A 109 VRAVREAVPQA-VLKVILETGYFSPEEIARLAEAAIRGGADFLKTST-G---FGPRGASLEDVALLVRVAQGRAQVKAAG 183 (220)
T ss_dssp HHHHHHHSTTS-EEEEECCGGGSCHHHHHHHHHHHHHHTCSEEECCC-S---SSSCCCCHHHHHHHHHHHTTSSEEEEES
T ss_pred HHHHHHHHcCC-CceEEEecCCCCHHHHHHHHHHHHHhCCCEEEeCC-C---CCCCCCCHHHHHHHHHhhCCCCeEEEEC
Confidence 33566554433 56644 34443 6788999999999873 2 1122345555555555566689999999
Q ss_pred CCCCHHHHHHHHHcCCCEEEe
Q 017718 285 GVRRGTDVFKALALGASGIFI 305 (367)
Q Consensus 285 GI~~~~dv~kal~lGAd~V~i 305 (367)
||++.+|+++++.+||+-++.
T Consensus 184 Girt~~~al~~i~aGa~RiG~ 204 (220)
T 1ub3_A 184 GIRDRETALRMLKAGASRLGT 204 (220)
T ss_dssp SCCSHHHHHHHHHTTCSEEEE
T ss_pred CCCCHHHHHHHHHCCCcccch
Confidence 999999999999999994443
|
| >2yw3_A 4-hydroxy-2-oxoglutarate aldolase/2-deydro-3- deoxyphosphogluconate aldolase; structural genomics, NPPSFA; 1.67A {Thermus thermophilus} PDB: 2yw4_A | Back alignment and structure |
|---|
Probab=98.22 E-value=4.9e-05 Score=68.20 Aligned_cols=83 Identities=18% Similarity=0.175 Sum_probs=65.2
Q ss_pred hhcCCCEEEEecCCHHHHHHHHHcCCcEEEEcCCCCCCCCCccchHHHHHHHHHHhcCCCcEEEecCCCCHHHHHHHHHc
Q 017718 219 TITKLPILVKGVLTAEDARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALAL 298 (367)
Q Consensus 219 ~~~~~Pv~vK~v~~~~~a~~~~~~G~d~i~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~~~via~GGI~~~~dv~kal~l 298 (367)
+..++|+++ ++.+++++..+.+.|+|+|.+.. . ..-+| .+.|++++..++ ++|+++.|||. .+++..++++
T Consensus 101 ~~~g~~~i~-G~~t~~e~~~A~~~Gad~v~~fp--a-~~~gG---~~~lk~l~~~~~-~ipvvaiGGI~-~~n~~~~l~a 171 (207)
T 2yw3_A 101 QARGVPYLP-GVLTPTEVERALALGLSALKFFP--A-EPFQG---VRVLRAYAEVFP-EVRFLPTGGIK-EEHLPHYAAL 171 (207)
T ss_dssp HHHTCCEEE-EECSHHHHHHHHHTTCCEEEETT--T-TTTTH---HHHHHHHHHHCT-TCEEEEBSSCC-GGGHHHHHTC
T ss_pred HHhCCCEEe-cCCCHHHHHHHHHCCCCEEEEec--C-ccccC---HHHHHHHHhhCC-CCcEEEeCCCC-HHHHHHHHhC
Confidence 346788877 48899999999999999999942 1 11112 455677766553 79999999997 6999999999
Q ss_pred CCCEEEechHHH
Q 017718 299 GASGIFIGRPVV 310 (367)
Q Consensus 299 GAd~V~ig~~~l 310 (367)
||++|.+|+.++
T Consensus 172 Ga~~vavgSai~ 183 (207)
T 2yw3_A 172 PNLLAVGGSWLL 183 (207)
T ss_dssp SSBSCEEESGGG
T ss_pred CCcEEEEehhhh
Confidence 999999999765
|
| >2tps_A Protein (thiamin phosphate synthase); thiamin biosynthesis, TIM barrel; HET: TPS; 1.25A {Bacillus subtilis} SCOP: c.1.3.1 PDB: 1g4t_A* 3o15_A* 1g6c_A* 1g4e_A* 1g69_A* 3o16_A 1g4s_A* 1g4p_A* 1g67_A* | Back alignment and structure |
|---|
Probab=98.19 E-value=8.7e-06 Score=73.45 Aligned_cols=95 Identities=16% Similarity=0.157 Sum_probs=67.7
Q ss_pred HHHHHhhcCCCEEEEe-cCCHHHHHHHHHcCCcEEEEcC--CCCCCCC-CccchHHHHHHHHHHhcCCCcEEEecCCCCH
Q 017718 214 WKWLQTITKLPILVKG-VLTAEDARIAVQAGAAGIIVSN--HGARQLD-YVPATIMALEEVVKATQGRIPVFLDGGVRRG 289 (367)
Q Consensus 214 ~~~l~~~~~~Pv~vK~-v~~~~~a~~~~~~G~d~i~vs~--~gg~~~~-~~~~~~~~l~~i~~~~~~~~~via~GGI~~~ 289 (367)
+..+++..+. +++.. +.+.+++..+.+.|+|+|.++. .++.... ..+..++.+.++++.++ ++||++.|||. +
T Consensus 107 ~~~~~~~~g~-~~~~~s~~t~~e~~~a~~~g~d~v~~~~v~~t~~~~~~~~~~~~~~l~~~~~~~~-~~pvia~GGI~-~ 183 (227)
T 2tps_A 107 AKEVRAAIGD-MILGVSAHTMSEVKQAEEDGADYVGLGPIYPTETKKDTRAVQGVSLIEAVRRQGI-SIPIVGIGGIT-I 183 (227)
T ss_dssp HHHHHHHHTT-SEEEEEECSHHHHHHHHHHTCSEEEECCSSCCCSSSSCCCCCTTHHHHHHHHTTC-CCCEEEESSCC-T
T ss_pred HHHHHHhcCC-cEEEEecCCHHHHHHHHhCCCCEEEECCCcCCCCCCCCCCccCHHHHHHHHHhCC-CCCEEEEcCCC-H
Confidence 3345554554 44443 3677888999999999999742 1211111 23345777888876552 39999999999 9
Q ss_pred HHHHHHHHcCCCEEEechHHHH
Q 017718 290 TDVFKALALGASGIFIGRPVVY 311 (367)
Q Consensus 290 ~dv~kal~lGAd~V~ig~~~l~ 311 (367)
+++.+++.+||++|.+|+.++.
T Consensus 184 ~nv~~~~~~Ga~gv~vgs~i~~ 205 (227)
T 2tps_A 184 DNAAPVIQAGADGVSMISAISQ 205 (227)
T ss_dssp TTSHHHHHTTCSEEEESHHHHT
T ss_pred HHHHHHHHcCCCEEEEhHHhhc
Confidence 9999999999999999998864
|
| >3tdn_A FLR symmetric alpha-beta TIM barrel; symmetric superfold, de novo protein; 1.40A {Synthetic construct} PDB: 3og3_A 3tdm_A | Back alignment and structure |
|---|
Probab=98.19 E-value=3.8e-06 Score=77.23 Aligned_cols=75 Identities=17% Similarity=0.186 Sum_probs=60.7
Q ss_pred HHHHHHHHHcCCcEEEEcCCCCCCCCCccchHHHHHHHHHHhcCCCcEEEecCCCCHHHHHHHHHcCCCEEEechHHH
Q 017718 233 AEDARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFIGRPVV 310 (367)
Q Consensus 233 ~~~a~~~~~~G~d~i~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~~~via~GGI~~~~dv~kal~lGAd~V~ig~~~l 310 (367)
.+.|+.+.++|+|.|.++.-.+. .......++.+.++++.+ ++||+++|||++.+|+.+++..|||+|++|+.++
T Consensus 38 ~~~a~~~~~~G~~~i~v~d~~~~-~~~~~~~~~~i~~i~~~~--~ipvi~~Ggi~~~~~~~~~l~~Gad~V~ig~~~l 112 (247)
T 3tdn_A 38 RDWVVEVEKRGAGEILLTSIDRD-GTKSGYDTEMIRFVRPLT--TLPIIASGGAGKMEHFLEAFLRGADKVSINTAAV 112 (247)
T ss_dssp HHHHHHHHHTTCSEEEEEETTTT-TCSSCCCHHHHHHHGGGC--CSCEEEESCCCSHHHHHHHHHTTCSEECCSHHHH
T ss_pred HHHHHHHHHcCCCEEEEEecCcc-cCCCcccHHHHHHHHHhC--CCCEEEeCCCCCHHHHHHHHHcCCCeeehhhHHh
Confidence 47789999999999998642111 112234678888887766 8999999999999999999999999999999876
|
| >3o63_A Probable thiamine-phosphate pyrophosphorylase; thiamin biosynthesis, TIM barrel, transferase; 2.35A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=98.18 E-value=1e-05 Score=74.54 Aligned_cols=96 Identities=14% Similarity=0.126 Sum_probs=67.0
Q ss_pred HHHHhhcCC-CEEEEecCCHHHHHHHHHcCCcEEEEcCCCCCCC--CCccchHHHHHHHHHHhcCCCcEEEecCCCCHHH
Q 017718 215 KWLQTITKL-PILVKGVLTAEDARIAVQAGAAGIIVSNHGARQL--DYVPATIMALEEVVKATQGRIPVFLDGGVRRGTD 291 (367)
Q Consensus 215 ~~l~~~~~~-Pv~vK~v~~~~~a~~~~~~G~d~i~vs~~gg~~~--~~~~~~~~~l~~i~~~~~~~~~via~GGI~~~~d 291 (367)
..+|+..+. .++---+.+.++++.+.+.|+|+|.+++-..+.. +..+..++.+.++.+....++||++.||| +.++
T Consensus 126 ~~~r~~~~~~~~iG~S~ht~~Ea~~A~~~GaDyI~vgpvf~T~tK~~~~~~gl~~l~~~~~~~~~~iPvvAiGGI-~~~n 204 (243)
T 3o63_A 126 NVARQILAPDTLIGRSTHDPDQVAAAAAGDADYFCVGPCWPTPTKPGRAAPGLGLVRVAAELGGDDKPWFAIGGI-NAQR 204 (243)
T ss_dssp HHHHHHSCTTCEEEEEECSHHHHHHHHHSSCSEEEECCSSCCCC-----CCCHHHHHHHHTC---CCCEEEESSC-CTTT
T ss_pred HHHHHhhCCCCEEEEeCCCHHHHHHHhhCCCCEEEEcCccCCCCCCCcchhhHHHHHHHHHhccCCCCEEEecCC-CHHH
Confidence 355554432 2322235788999999999999999965222211 11233567777776532237999999999 8999
Q ss_pred HHHHHHcCCCEEEechHHHH
Q 017718 292 VFKALALGASGIFIGRPVVY 311 (367)
Q Consensus 292 v~kal~lGAd~V~ig~~~l~ 311 (367)
+.+++.+||++|.+++.++.
T Consensus 205 i~~~~~aGa~gvav~sai~~ 224 (243)
T 3o63_A 205 LPAVLDAGARRIVVVRAITS 224 (243)
T ss_dssp HHHHHHTTCCCEEESHHHHT
T ss_pred HHHHHHcCCCEEEEeHHHhC
Confidence 99999999999999998874
|
| >4e38_A Keto-hydroxyglutarate-aldolase/keto-deoxy-phospho aldolase; lyase; 1.64A {Vibrionales bacterium swat-3} | Back alignment and structure |
|---|
Probab=98.16 E-value=1.4e-05 Score=73.06 Aligned_cols=169 Identities=14% Similarity=0.116 Sum_probs=102.4
Q ss_pred EEEEeecCCHHHHHHHHHHHHHcCCcEEEEecCCCCCCchhHHhhhhcCCCCccccccccccccCccccccchhhHHHhh
Q 017718 126 FFQLYVYKDRNVVAQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLTLKNFQGLDLGKMDEANDSGLAAYVA 205 (367)
Q Consensus 126 ~~QLy~~~d~~~~~~~l~ra~~~G~~ai~itvd~p~~g~r~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 205 (367)
.+-+....+.+...++++.+.+.|++.+-+|+.+|..-.-.+.++..+ |. +... ..........+....+.++++-
T Consensus 36 vv~Vir~~~~~~a~~~a~al~~gGi~~iEvt~~t~~a~e~I~~l~~~~--~~-~~iG-aGTVlt~~~a~~Ai~AGA~fIv 111 (232)
T 4e38_A 36 VIPVIAIDNAEDIIPLGKVLAENGLPAAEITFRSDAAVEAIRLLRQAQ--PE-MLIG-AGTILNGEQALAAKEAGATFVV 111 (232)
T ss_dssp EEEEECCSSGGGHHHHHHHHHHTTCCEEEEETTSTTHHHHHHHHHHHC--TT-CEEE-EECCCSHHHHHHHHHHTCSEEE
T ss_pred EEEEEEcCCHHHHHHHHHHHHHCCCCEEEEeCCCCCHHHHHHHHHHhC--CC-CEEe-ECCcCCHHHHHHHHHcCCCEEE
Confidence 344555677788888888888889999998888775322233444444 21 1110 0000000000000000111111
Q ss_pred hccCccccHH--HHHhhcCCCEEEEecCCHHHHHHHHHcCCcEEEEcCCCCCCCCCccchHHHHHHHHHHhcCCCcEEEe
Q 017718 206 GQIDRSLSWK--WLQTITKLPILVKGVLTAEDARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLD 283 (367)
Q Consensus 206 ~~~d~~~~~~--~l~~~~~~Pv~vK~v~~~~~a~~~~~~G~d~i~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~~~via~ 283 (367)
-|.++-+ ...+..++|++. ++.++.++..+.++|+|.|-+.-.+ . .+ -.+.|+.++..++ ++|+++.
T Consensus 112 ---sP~~~~~vi~~~~~~gi~~ip-Gv~TptEi~~A~~~Gad~vK~FPa~--~-~g---G~~~lkal~~p~p-~ip~~pt 180 (232)
T 4e38_A 112 ---SPGFNPNTVRACQEIGIDIVP-GVNNPSTVEAALEMGLTTLKFFPAE--A-SG---GISMVKSLVGPYG-DIRLMPT 180 (232)
T ss_dssp ---CSSCCHHHHHHHHHHTCEEEC-EECSHHHHHHHHHTTCCEEEECSTT--T-TT---HHHHHHHHHTTCT-TCEEEEB
T ss_pred ---eCCCCHHHHHHHHHcCCCEEc-CCCCHHHHHHHHHcCCCEEEECcCc--c-cc---CHHHHHHHHHHhc-CCCeeeE
Confidence 1223222 222335888866 7889999999999999999985321 1 12 2466666655443 7999999
Q ss_pred cCCCCHHHHHHHHHcCCCEEEechHHH
Q 017718 284 GGVRRGTDVFKALALGASGIFIGRPVV 310 (367)
Q Consensus 284 GGI~~~~dv~kal~lGAd~V~ig~~~l 310 (367)
|||. .+++..++++||.++.+|+.+.
T Consensus 181 GGI~-~~n~~~~l~aGa~~~vgGs~l~ 206 (232)
T 4e38_A 181 GGIT-PSNIDNYLAIPQVLACGGTWMV 206 (232)
T ss_dssp SSCC-TTTHHHHHTSTTBCCEEECGGG
T ss_pred cCCC-HHHHHHHHHCCCeEEEECchhc
Confidence 9995 8999999999999999888654
|
| >4a29_A Engineered retro-aldol enzyme RA95.0; de novo protein, engineered enzyme, retro-aldolase, directed evolution; HET: 3NK MLT; 1.10A {Synthetic construct} PDB: 4a2s_A* 4a2r_A* 3tc7_A 3tc6_A 3nl8_A* 3nxf_A* 3o6y_X 3ud6_A* 1igs_A 1juk_A 1jul_A* 3hoj_A 1a53_A* 1lbf_A* 1lbl_A* 3nyz_A 3nz1_A* 3uy7_A 3uxd_A* 3uxa_A* ... | Back alignment and structure |
|---|
Probab=98.14 E-value=7.5e-05 Score=68.76 Aligned_cols=89 Identities=12% Similarity=0.153 Sum_probs=70.4
Q ss_pred hhcCCCEEEEecCCHHHHHHHHHcCCcEEEEcCCCCCCCCCccchHHHHHHHHHHhcCCCcEEEecCCCCHHHHHHHHHc
Q 017718 219 TITKLPILVKGVLTAEDARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALAL 298 (367)
Q Consensus 219 ~~~~~Pv~vK~v~~~~~a~~~~~~G~d~i~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~~~via~GGI~~~~dv~kal~l 298 (367)
...++-++| .+-+.++.+++.+.|++.|-|-|. .+.+-....+...++...++.++.+|+.+||.+++|+.++...
T Consensus 150 ~~lGl~~Lv-EVh~~~El~rAl~~~a~iIGINNR---nL~tf~vdl~~t~~L~~~ip~~~~~VsESGI~t~~dv~~l~~~ 225 (258)
T 4a29_A 150 RSYGMEPLI-LINDENDLDIALRIGARFIGIMSR---DFETGEINKENQRKLISMIPSNVVKVAKLGISERNEIEELRKL 225 (258)
T ss_dssp HHTTCCCEE-EESSHHHHHHHHHTTCSEEEECSB---CTTTCCBCHHHHHHHHTTSCTTSEEEEEESSCCHHHHHHHHHT
T ss_pred HHHhHHHHH-hcchHHHHHHHhcCCCcEEEEeCC---CccccccCHHHHHHHHhhCCCCCEEEEcCCCCCHHHHHHHHHC
Confidence 345776655 678899999999999998888663 3333334455555566666778899999999999999999999
Q ss_pred CCCEEEechHHHH
Q 017718 299 GASGIFIGRPVVY 311 (367)
Q Consensus 299 GAd~V~ig~~~l~ 311 (367)
|+|+|.||..+|.
T Consensus 226 G~~a~LVGealmr 238 (258)
T 4a29_A 226 GVNAFLISSSLMR 238 (258)
T ss_dssp TCCEEEECHHHHH
T ss_pred CCCEEEECHHHhC
Confidence 9999999999987
|
| >1xi3_A Thiamine phosphate pyrophosphorylase; structural genomics, southeast collaboratory for structural genomics, hyperthermophIle; 1.70A {Pyrococcus furiosus} SCOP: c.1.3.1 | Back alignment and structure |
|---|
Probab=98.13 E-value=1.2e-05 Score=71.82 Aligned_cols=79 Identities=24% Similarity=0.289 Sum_probs=62.0
Q ss_pred cCCHHHHHHHHHcCCcEEEEcC--CCCCCCCCccchHHHHHHHHHHhcCCCcEEEecCCCCHHHHHHHHHcCCCEEEech
Q 017718 230 VLTAEDARIAVQAGAAGIIVSN--HGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFIGR 307 (367)
Q Consensus 230 v~~~~~a~~~~~~G~d~i~vs~--~gg~~~~~~~~~~~~l~~i~~~~~~~~~via~GGI~~~~dv~kal~lGAd~V~ig~ 307 (367)
+.+.+++..+.+.|+|+|.+++ .++......+..++.+.++++.. ++||++.|||. ++++.+++.+||++|.+|+
T Consensus 115 ~~t~~e~~~~~~~g~d~i~~~~~~~~~~~~~~~~~~~~~l~~l~~~~--~~pvia~GGI~-~~nv~~~~~~Ga~gv~vgs 191 (215)
T 1xi3_A 115 VYSLEEALEAEKKGADYLGAGSVFPTKTKEDARVIGLEGLRKIVESV--KIPVVAIGGIN-KDNAREVLKTGVDGIAVIS 191 (215)
T ss_dssp ESSHHHHHHHHHHTCSEEEEECSSCC----CCCCCHHHHHHHHHHHC--SSCEEEESSCC-TTTHHHHHTTTCSEEEESH
T ss_pred cCCHHHHHHHHhcCCCEEEEcCCccCCCCCCCCCcCHHHHHHHHHhC--CCCEEEECCcC-HHHHHHHHHcCCCEEEEhH
Confidence 4677888889999999999864 12111112345778888887766 79999999999 9999999999999999999
Q ss_pred HHHH
Q 017718 308 PVVY 311 (367)
Q Consensus 308 ~~l~ 311 (367)
.++.
T Consensus 192 ~i~~ 195 (215)
T 1xi3_A 192 AVMG 195 (215)
T ss_dssp HHHT
T ss_pred HHhC
Confidence 8864
|
| >2agk_A 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino) methylideneamino] imidazole-4-carboxamide...; TIM alpha/beta barrel; HET: CIT; 1.30A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=98.09 E-value=4.6e-06 Score=77.68 Aligned_cols=74 Identities=12% Similarity=0.154 Sum_probs=58.8
Q ss_pred HHHHHHHHcCCcEEEEcCCCCCCCCCccchHHHHHHHHHHhcC--CCcEEEecCCCCHHHHHHHHHc--CCCEEEechHH
Q 017718 234 EDARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQG--RIPVFLDGGVRRGTDVFKALAL--GASGIFIGRPV 309 (367)
Q Consensus 234 ~~a~~~~~~G~d~i~vs~~gg~~~~~~~~~~~~l~~i~~~~~~--~~~via~GGI~~~~dv~kal~l--GAd~V~ig~~~ 309 (367)
+.++.+.++ ++.|++++-..-+...|+ .++.+.++.+.++. ++|||++|||++.+|+.+++.+ ||++|++||++
T Consensus 162 e~a~~~~~~-a~~il~t~i~~dG~~~G~-d~eli~~l~~~~~~~~~iPVIasGGi~s~ed~~~l~~~~~G~~gvivg~al 239 (260)
T 2agk_A 162 DTFRELRKY-TNEFLIHAADVEGLCGGI-DELLVSKLFEWTKDYDDLKIVYAGGAKSVDDLKLVDELSHGKVDLTFGSSL 239 (260)
T ss_dssp HHHHHHTTT-CSEEEEEC-------CCC-CHHHHHHHHHHHTTCSSCEEEEESCCCCTHHHHHHHHHHTTCEEEECCTTB
T ss_pred HHHHHHHHh-cCEEEEEeeccccCcCCC-CHHHHHHHHHhhcccCCceEEEeCCCCCHHHHHHHHHhcCCCCEEEeeCCH
Confidence 778999999 999999542211223454 89999999887622 6999999999999999999998 99999999987
|
| >3ovp_A Ribulose-phosphate 3-epimerase; iron binding, isomerase; HET: XPE; 1.70A {Homo sapiens} SCOP: c.1.2.0 PDB: 3ovq_A* 3ovr_A* 3qc3_A | Back alignment and structure |
|---|
Probab=98.08 E-value=9e-05 Score=67.54 Aligned_cols=70 Identities=24% Similarity=0.283 Sum_probs=51.3
Q ss_pred chHHHHHHHHHHhcCCCcEEEecCCCCHHHHHHHHHcCCCEEEechHHHHHhhccChHHHHHHHHHHHHHHHHHHHHh
Q 017718 262 ATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFIGRPVVYSLAAEGEKGVRRVLEMLREEFELAMALS 339 (367)
Q Consensus 262 ~~~~~l~~i~~~~~~~~~via~GGI~~~~dv~kal~lGAd~V~ig~~~l~~l~~~G~~~v~~~i~~l~~el~~~m~~~ 339 (367)
..++.+.++++.. .+++|.++|||+ .+.+.++..+|||.+.+||+++-+ . .....++.++++++......
T Consensus 155 ~~l~ki~~lr~~~-~~~~I~VdGGI~-~~t~~~~~~aGAd~~VvGsaIf~a---~---dp~~~~~~l~~~~~~~~~~~ 224 (228)
T 3ovp_A 155 DMMPKVHWLRTQF-PSLDIEVDGGVG-PDTVHKCAEAGANMIVSGSAIMRS---E---DPRSVINLLRNVCSEAAQKR 224 (228)
T ss_dssp GGHHHHHHHHHHC-TTCEEEEESSCS-TTTHHHHHHHTCCEEEESHHHHTC---S---CHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHhc-CCCCEEEeCCcC-HHHHHHHHHcCCCEEEEeHHHhCC---C---CHHHHHHHHHHHHHHHHhhc
Confidence 4566677776654 368999999995 799999999999999999977531 1 22345677777777666544
|
| >1h1y_A D-ribulose-5-phosphate 3-epimerase; oxidative pentose phosphate pathway, isomerase; 1.87A {Oryza sativa} SCOP: c.1.2.2 PDB: 1h1z_A | Back alignment and structure |
|---|
Probab=98.06 E-value=0.0003 Score=63.71 Aligned_cols=183 Identities=16% Similarity=0.162 Sum_probs=106.3
Q ss_pred HHHHHHHHHcCCcee-ec----CC---CCCCHHH---HHhhCCCceEEEEeecCCHHHHHHHHHHHHHcCCcEEEEecCC
Q 017718 91 YATARAASAAGTIMT-LS----SW---STSSVEE---VASTGPGIRFFQLYVYKDRNVVAQLVRRAERAGFKAIALTVDT 159 (367)
Q Consensus 91 ~~~a~aa~~~G~~~~-vs----~~---~~~~~e~---i~~~~~~~~~~QLy~~~d~~~~~~~l~ra~~~G~~ai~itvd~ 159 (367)
....+.+.+.|+.+. +. ++ .+...+. +.+..+.+.-+.|.. .|++. .++.+.++|++.+.++...
T Consensus 22 ~~~i~~~~~~Gad~i~l~i~Dg~fv~~~~~~~~~~~~lr~~~~~~~~v~lmv-~d~~~---~i~~~~~agad~v~vH~~~ 97 (228)
T 1h1y_A 22 AAEADRMVRLGADWLHMDIMDGHFVPNLTIGAPVIQSLRKHTKAYLDCHLMV-TNPSD---YVEPLAKAGASGFTFHIEV 97 (228)
T ss_dssp HHHHHHHHHTTCSEEEEEEEBSSSSSCBCBCHHHHHHHHTTCCSEEEEEEES-SCGGG---GHHHHHHHTCSEEEEEGGG
T ss_pred HHHHHHHHHcCCCEEEEEEecCCcCcchhhCHHHHHHHHhhcCCcEEEEEEe-cCHHH---HHHHHHHcCCCEEEECCCC
Confidence 356777788887653 22 11 1222333 333332355556665 45532 4667777899998887652
Q ss_pred CCCCchhHHhhhhcCCCCccccccccccccCccccccchhhHHHhhhccCc-cccHHHHHhhcCCCEEEEec--CCHHHH
Q 017718 160 PRLGRREADIKNRFTLPPFLTLKNFQGLDLGKMDEANDSGLAAYVAGQIDR-SLSWKWLQTITKLPILVKGV--LTAEDA 236 (367)
Q Consensus 160 p~~g~r~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~-~~~~~~l~~~~~~Pv~vK~v--~~~~~a 236 (367)
+-. . .-..+.+++ .++++++-.. ...+..
T Consensus 98 ~~~-----------------------------------------------~~~~~~~~i~~-~g~~igv~~~p~t~~e~~ 129 (228)
T 1h1y_A 98 SRD-----------------------------------------------NWQELIQSIKA-KGMRPGVSLRPGTPVEEV 129 (228)
T ss_dssp CTT-----------------------------------------------THHHHHHHHHH-TTCEEEEEECTTSCGGGG
T ss_pred ccc-----------------------------------------------HHHHHHHHHHH-cCCCEEEEEeCCCCHHHH
Confidence 110 0 001123433 3556655442 223444
Q ss_pred HHHHHc--CCcEEEEcC-CCC-CCCCCccchHHHHHHHHHHhcCCCcEEEecCCCCHHHHHHHHHcCCCEEEechHHHHH
Q 017718 237 RIAVQA--GAAGIIVSN-HGA-RQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFIGRPVVYS 312 (367)
Q Consensus 237 ~~~~~~--G~d~i~vs~-~gg-~~~~~~~~~~~~l~~i~~~~~~~~~via~GGI~~~~dv~kal~lGAd~V~ig~~~l~~ 312 (367)
+...+. ++|+|.+.. ++| ......+..++.+.++++... ++||+++|||.. +++.+++..|||.+.+||.++.+
T Consensus 130 ~~~~~~~~~~d~vl~~sv~pg~~g~~~~~~~l~~i~~~~~~~~-~~pi~v~GGI~~-~ni~~~~~aGaD~vvvGsai~~~ 207 (228)
T 1h1y_A 130 FPLVEAENPVELVLVMTVEPGFGGQKFMPEMMEKVRALRKKYP-SLDIEVDGGLGP-STIDVAASAGANCIVAGSSIFGA 207 (228)
T ss_dssp HHHHHSSSCCSEEEEESSCTTCSSCCCCGGGHHHHHHHHHHCT-TSEEEEESSCST-TTHHHHHHHTCCEEEESHHHHTS
T ss_pred HHHHhcCCCCCEEEEEeecCCCCcccCCHHHHHHHHHHHHhcC-CCCEEEECCcCH-HHHHHHHHcCCCEEEECHHHHCC
Confidence 555555 999998743 222 222234456677777777653 789999999987 78989999999999999987631
Q ss_pred hhccChHHHHHHHHHHHHHHH
Q 017718 313 LAAEGEKGVRRVLEMLREEFE 333 (367)
Q Consensus 313 l~~~G~~~v~~~i~~l~~el~ 333 (367)
.. ....++.+++.++
T Consensus 208 ---~d---~~~~~~~l~~~~~ 222 (228)
T 1h1y_A 208 ---AE---PGEVISALRKSVE 222 (228)
T ss_dssp ---SC---HHHHHHHHHHHHH
T ss_pred ---CC---HHHHHHHHHHHHH
Confidence 12 3344555555443
|
| >4gbu_A NADPH dehydrogenase 1; alpha/beta barrel, enenone reductase, alkene reductase, NADP oxidoreductase, carvone, enenatioselectivity; HET: 0WV 1PE FMN; 1.18A {Saccharomyces pastorianus} PDB: 4ge8_A* 1oya_A* 1oyb_A* 1oyc_A* 3tx9_A* 3rnd_A* 1k02_A* 1k03_A* 1bwk_A* 1bwl_A* | Back alignment and structure |
|---|
Probab=98.03 E-value=0.00014 Score=71.75 Aligned_cols=40 Identities=20% Similarity=0.129 Sum_probs=33.8
Q ss_pred HHHHhcCCCcEEEecCCCCHHHHHHHHHc-CCCEEEechHHHH
Q 017718 270 VVKATQGRIPVFLDGGVRRGTDVFKALAL-GASGIFIGRPVVY 311 (367)
Q Consensus 270 i~~~~~~~~~via~GGI~~~~dv~kal~l-GAd~V~ig~~~l~ 311 (367)
+++.+ ++|||+.|||.+..++.+.+.. +||+|.+||++|.
T Consensus 313 ir~~~--~~pvi~~G~~~~~~~~~~~~~~~~aDlV~~gR~~ia 353 (400)
T 4gbu_A 313 VYSIW--KGPVIRAGNFALHPEVVREEVKDKRTLIGYGRFFIS 353 (400)
T ss_dssp HHHHC--CSCEEEESSCTTCHHHHHHHTTSTTEEEECCHHHHH
T ss_pred HHHHh--CCCEEEeCCCCChHHHHHHHHcCCCeEhHHHHHHHH
Confidence 44455 7899999999998888888775 6999999999985
|
| >3jr2_A Hexulose-6-phosphate synthase SGBH; 3-keto-L-gulonate-6-phosphate decarboxylase, ULAD, niaid,CSG bound, biosynthetic protein; HET: MSE; 1.80A {Vibrio cholerae} SCOP: c.1.2.0 PDB: 3ieb_A* | Back alignment and structure |
|---|
Probab=97.99 E-value=3.9e-05 Score=69.23 Aligned_cols=168 Identities=17% Similarity=0.189 Sum_probs=97.7
Q ss_pred hhHHHHHHHHHcCCcee-ecC-----CCCCCHHHHHhhCC-CceEEEEeecCCHHHHHHHHHHHHHcCCcEEEEecCCCC
Q 017718 89 GEYATARAASAAGTIMT-LSS-----WSTSSVEEVASTGP-GIRFFQLYVYKDRNVVAQLVRRAERAGFKAIALTVDTPR 161 (367)
Q Consensus 89 ~e~~~a~aa~~~G~~~~-vs~-----~~~~~~e~i~~~~~-~~~~~QLy~~~d~~~~~~~l~ra~~~G~~ai~itvd~p~ 161 (367)
..+.+++.. +.|+.++ ++. +....++++++..+ .+.++-++....++. .++.+.++|++.+.++.-.+.
T Consensus 20 ~~~~~~~~~-~~~vd~ie~g~~~~~~~G~~~i~~lr~~~~~~~i~ld~~l~d~p~~---~~~~~~~aGad~i~vh~~~~~ 95 (218)
T 3jr2_A 20 DAVAVASNV-ASYVDVIEVGTILAFAEGMKAVSTLRHNHPNHILVCDMKTTDGGAI---LSRMAFEAGADWITVSAAAHI 95 (218)
T ss_dssp HHHHHHHHH-GGGCSEEEECHHHHHHHTTHHHHHHHHHCTTSEEEEEEEECSCHHH---HHHHHHHHTCSEEEEETTSCH
T ss_pred HHHHHHHHh-cCCceEEEeCcHHHHhcCHHHHHHHHHhCCCCcEEEEEeecccHHH---HHHHHHhcCCCEEEEecCCCH
Confidence 345666664 3455544 331 12223456666544 345555554433433 567888899998877543210
Q ss_pred CCchhHHhhhhcCCCCccccccccccccCccccccchhhHHHhhhccCccccHHHHHhhcCCCEEEE--ecCCHHHHHHH
Q 017718 162 LGRREADIKNRFTLPPFLTLKNFQGLDLGKMDEANDSGLAAYVAGQIDRSLSWKWLQTITKLPILVK--GVLTAEDARIA 239 (367)
Q Consensus 162 ~g~r~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~l~~~~~~Pv~vK--~v~~~~~a~~~ 239 (367)
+ ...+ ..+.+++ .+++..+. ++.+.++++.+
T Consensus 96 ----~--------------------------------~~~~----------~~~~~~~-~g~~~~~d~l~~~T~~~~~~~ 128 (218)
T 3jr2_A 96 ----A--------------------------------TIAA----------CKKVADE-LNGEIQIEIYGNWTMQDAKAW 128 (218)
T ss_dssp ----H--------------------------------HHHH----------HHHHHHH-HTCEEEEECCSSCCHHHHHHH
T ss_pred ----H--------------------------------HHHH----------HHHHHHH-hCCccceeeeecCCHHHHHHH
Confidence 0 0000 0113333 35555432 33677888889
Q ss_pred HHcCCcEEEEcCC--CCC-CCCCccchHHHHHHHHHHhcCCCcEEEecCCCCHHHHHHHHHcCCCEEEechHHHH
Q 017718 240 VQAGAAGIIVSNH--GAR-QLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFIGRPVVY 311 (367)
Q Consensus 240 ~~~G~d~i~vs~~--gg~-~~~~~~~~~~~l~~i~~~~~~~~~via~GGI~~~~dv~kal~lGAd~V~ig~~~l~ 311 (367)
.+.|+|++.+.-. ++. .....+..++.++++. +.++|++++||| +.+++.+++.+|||.+.+||++..
T Consensus 129 ~~~g~d~v~~~~~~~~~~~g~~~~~~~l~~i~~~~---~~~~pi~v~GGI-~~~~~~~~~~aGAd~vvvGsaI~~ 199 (218)
T 3jr2_A 129 VDLGITQAIYHRSRDAELAGIGWTTDDLDKMRQLS---ALGIELSITGGI-VPEDIYLFEGIKTKTFIAGRALAG 199 (218)
T ss_dssp HHTTCCEEEEECCHHHHHHTCCSCHHHHHHHHHHH---HTTCEEEEESSC-CGGGGGGGTTSCEEEEEESGGGSH
T ss_pred HHcCccceeeeeccccccCCCcCCHHHHHHHHHHh---CCCCCEEEECCC-CHHHHHHHHHcCCCEEEEchhhcC
Confidence 9999999876310 110 0111233344444443 237999999999 589999999999999999998764
|
| >1i4n_A Indole-3-glycerol phosphate synthase; thermostable TIM-barrel protein, salt bridges, electrostatic interactions, lyase; 2.50A {Thermotoga maritima} SCOP: c.1.2.4 PDB: 1j5t_A | Back alignment and structure |
|---|
Probab=97.97 E-value=9.4e-05 Score=68.36 Aligned_cols=86 Identities=13% Similarity=0.160 Sum_probs=67.5
Q ss_pred cCCCEEEEecCCHHHHHHHHHc-CCcEEEEcCCCCCCCCCccchHHHHHHHHHHhcCCCcEEEecCCCCHHHHHHHHHcC
Q 017718 221 TKLPILVKGVLTAEDARIAVQA-GAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALG 299 (367)
Q Consensus 221 ~~~Pv~vK~v~~~~~a~~~~~~-G~d~i~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~~~via~GGI~~~~dv~kal~lG 299 (367)
.++-+++ .+.+.++++++.++ |+|.|-+.|.+-+++ ...++...++.+.++..+++|+.|||.+++|+.++..+
T Consensus 149 lGl~~lv-Ev~~~eE~~~A~~l~g~~iIGinnr~l~t~---~~d~~~~~~l~~~ip~~~~vIaEsGI~t~edv~~~~~~- 223 (251)
T 1i4n_A 149 LGMDSLV-EVHSREDLEKVFSVIRPKIIGINTRDLDTF---EIKKNVLWELLPLVPDDTVVVAESGIKDPRELKDLRGK- 223 (251)
T ss_dssp TTCEEEE-EECSHHHHHHHHTTCCCSEEEEECBCTTTC---CBCTTHHHHHGGGSCTTSEEEEESCCCCGGGHHHHTTT-
T ss_pred cCCeEEE-EeCCHHHHHHHHhcCCCCEEEEeCcccccC---CCCHHHHHHHHHhCCCCCEEEEeCCCCCHHHHHHHHHh-
Confidence 4666654 57899999999999 999998977543222 23344444555555557899999999999999999999
Q ss_pred CCEEEechHHHH
Q 017718 300 ASGIFIGRPVVY 311 (367)
Q Consensus 300 Ad~V~ig~~~l~ 311 (367)
||+|.||+.++.
T Consensus 224 a~avLVG~aimr 235 (251)
T 1i4n_A 224 VNAVLVGTSIMK 235 (251)
T ss_dssp CSEEEECHHHHH
T ss_pred CCEEEEcHHHcC
Confidence 999999999986
|
| >3tha_A Tryptophan synthase alpha chain; structural genomics, center for structural genomics of infec diseases, csgid, lyase; 2.37A {Campylobacter jejuni} | Back alignment and structure |
|---|
Probab=97.96 E-value=0.0001 Score=68.12 Aligned_cols=86 Identities=17% Similarity=0.213 Sum_probs=57.0
Q ss_pred CCHHHHHHHHHcCCcEEEEcCCCCC-CCCCc--cchHHHHHHHHHHhcCCCcEEEecCCCCHHHHHHHHHcCCCEEEech
Q 017718 231 LTAEDARIAVQAGAAGIIVSNHGAR-QLDYV--PATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFIGR 307 (367)
Q Consensus 231 ~~~~~a~~~~~~G~d~i~vs~~gg~-~~~~~--~~~~~~l~~i~~~~~~~~~via~GGI~~~~dv~kal~lGAd~V~ig~ 307 (367)
.+.+..+...+.+-.+|.+-.+-|. ..... ....+.+.++++.. ++||++.+||++++++.++.. +||+|.+|+
T Consensus 152 t~~eRi~~ia~~a~gFiY~Vs~~GvTG~~~~~~~~~~~~v~~vr~~~--~~Pv~vGfGIst~e~a~~~~~-~ADGVIVGS 228 (252)
T 3tha_A 152 TPKERVKKLVKHAKGFIYLLASIGITGTKSVEEAILQDKVKEIRSFT--NLPIFVGFGIQNNQDVKRMRK-VADGVIVGT 228 (252)
T ss_dssp SCHHHHHHHHTTCCSCEEEECCSCSSSCSHHHHHHHHHHHHHHHTTC--CSCEEEESSCCSHHHHHHHTT-TSSEEEECH
T ss_pred CcHHHHHHHHHhCCCeEEEEecCCCCCcccCCCHHHHHHHHHHHHhc--CCcEEEEcCcCCHHHHHHHHh-cCCEEEECH
Confidence 4467788887776666654332221 11111 11234556665543 799999999999999987765 799999999
Q ss_pred HHHHHhhccChH
Q 017718 308 PVVYSLAAEGEK 319 (367)
Q Consensus 308 ~~l~~l~~~G~~ 319 (367)
+++..+...+.+
T Consensus 229 AiVk~i~~~~~~ 240 (252)
T 3tha_A 229 SIVKCFKQGNLD 240 (252)
T ss_dssp HHHHHTTSSCHH
T ss_pred HHHHHHHhcCHH
Confidence 999876544443
|
| >1ujp_A Tryptophan synthase alpha chain; riken structural genomics/P initiative, RSGI, structural genomics, lyase; HET: CIT; 1.34A {Thermus thermophilus} SCOP: c.1.2.4 PDB: 1wxj_A* | Back alignment and structure |
|---|
Probab=97.96 E-value=9.9e-05 Score=69.01 Aligned_cols=79 Identities=19% Similarity=0.198 Sum_probs=52.0
Q ss_pred CCHHHHHHHHHcCCcEEEE-cCCCCC--CCCCccchHHHHHHHHHHhcCCCcEEEecCCCCHHHHHHHHHcCCCEEEech
Q 017718 231 LTAEDARIAVQAGAAGIIV-SNHGAR--QLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFIGR 307 (367)
Q Consensus 231 ~~~~~a~~~~~~G~d~i~v-s~~gg~--~~~~~~~~~~~l~~i~~~~~~~~~via~GGI~~~~dv~kal~lGAd~V~ig~ 307 (367)
.+.+.++...+.+..++.+ +-.|-+ .........+.+.++++.. ++||++.|||++++++.++ .|||+|.+|+
T Consensus 155 s~~eri~~ia~~~~gfiy~vs~~G~TG~~~~~~~~~~~~v~~vr~~~--~~Pv~vGfGI~t~e~a~~~--~~ADgVIVGS 230 (271)
T 1ujp_A 155 STDARIATVVRHATGFVYAVSVTGVTGMRERLPEEVKDLVRRIKART--ALPVAVGFGVSGKATAAQA--AVADGVVVGS 230 (271)
T ss_dssp CCHHHHHHHHTTCCSCEEEECC------------CCHHHHHHHHTTC--CSCEEEESCCCSHHHHHHH--TTSSEEEECH
T ss_pred CCHHHHHHHHHhCCCCEEEEecCcccCCCCCCCccHHHHHHHHHhhc--CCCEEEEcCCCCHHHHHHh--cCCCEEEECh
Confidence 4456556555555555544 322222 1112233456777777654 7999999999999999996 9999999999
Q ss_pred HHHHHh
Q 017718 308 PVVYSL 313 (367)
Q Consensus 308 ~~l~~l 313 (367)
++....
T Consensus 231 Ai~~~~ 236 (271)
T 1ujp_A 231 ALVRAL 236 (271)
T ss_dssp HHHHHH
T ss_pred HHhccc
Confidence 998764
|
| >1ka9_F Imidazole glycerol phosphtate synthase; riken structural genomics/proteomics initiative, RSGI, structural genomics, transferase; 2.30A {Thermus thermophilus} SCOP: c.1.2.1 | Back alignment and structure |
|---|
Probab=97.88 E-value=3.2e-05 Score=70.89 Aligned_cols=76 Identities=26% Similarity=0.302 Sum_probs=59.3
Q ss_pred HHHHHHHHHcCCcEEEEcCCCCCCCCCccchHHHHHHHHHHhcCCCcEEEecCCCCHHHHHHHHHcCCCEEEechHHHH
Q 017718 233 AEDARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFIGRPVVY 311 (367)
Q Consensus 233 ~~~a~~~~~~G~d~i~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~~~via~GGI~~~~dv~kal~lGAd~V~ig~~~l~ 311 (367)
.+.++.+.++|+|.|.++.-.+. .......++.+.++++.+ ++||++.|||++.+++.+++.+|||+|.+|+..+-
T Consensus 34 ~~~a~~~~~~Gad~i~v~d~~~~-~~~~~~~~~~i~~i~~~~--~iPvi~~Ggi~~~~~~~~~~~~Gad~V~lg~~~l~ 109 (252)
T 1ka9_F 34 VEAARAYDEAGADELVFLDISAT-HEERAILLDVVARVAERV--FIPLTVGGGVRSLEDARKLLLSGADKVSVNSAAVR 109 (252)
T ss_dssp HHHHHHHHHHTCSCEEEEECCSS-TTCHHHHHHHHHHHHTTC--CSCEEEESSCCSHHHHHHHHHHTCSEEEECHHHHH
T ss_pred HHHHHHHHHcCCCEEEEEcCCcc-ccCccccHHHHHHHHHhC--CCCEEEECCcCCHHHHHHHHHcCCCEEEEChHHHh
Confidence 46688899999999998742211 112233556677776655 79999999999999999999999999999998763
|
| >1thf_D HISF protein; thermophIle, TIM-barrel, histidine biosynthesis, lyase, phosphate-binding sites; 1.45A {Thermotoga maritima} SCOP: c.1.2.1 PDB: 2wjz_A 2a0n_A* 1gpw_A 1vh7_A 2rkx_A 3iio_A 3iip_A* 3iiv_A | Back alignment and structure |
|---|
Probab=97.87 E-value=3.5e-05 Score=70.68 Aligned_cols=76 Identities=17% Similarity=0.226 Sum_probs=58.9
Q ss_pred HHHHHHHHHcCCcEEEEcCCCCCCCCCccchHHHHHHHHHHhcCCCcEEEecCCCCHHHHHHHHHcCCCEEEechHHHH
Q 017718 233 AEDARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFIGRPVVY 311 (367)
Q Consensus 233 ~~~a~~~~~~G~d~i~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~~~via~GGI~~~~dv~kal~lGAd~V~ig~~~l~ 311 (367)
.+.++.+.++|+|.|.++.-.+.. ......++.+.++++.+ ++||++.|||++.+++.+++.+|||+|.+|+..+.
T Consensus 33 ~~~a~~~~~~Gad~i~v~d~~~~~-~~~~~~~~~i~~i~~~~--~ipvi~~ggI~~~~~~~~~~~~Gad~V~lg~~~l~ 108 (253)
T 1thf_D 33 VELGKFYSEIGIDELVFLDITASV-EKRKTMLELVEKVAEQI--DIPFTVGGGIHDFETASELILRGADKVSINTAAVE 108 (253)
T ss_dssp HHHHHHHHHTTCCEEEEEESSCSS-SHHHHHHHHHHHHHTTC--CSCEEEESSCCSHHHHHHHHHTTCSEEEESHHHHH
T ss_pred HHHHHHHHHcCCCEEEEECCchhh-cCCcccHHHHHHHHHhC--CCCEEEeCCCCCHHHHHHHHHcCCCEEEEChHHHh
Confidence 356888999999999987532211 12233456677776644 79999999999999999999999999999997754
|
| >3inp_A D-ribulose-phosphate 3-epimerase; IDP02542, isomerase, struc genomics, center for structural genomics of infectious DISE csgid; 2.05A {Francisella tularensis subsp} | Back alignment and structure |
|---|
Probab=97.87 E-value=0.0003 Score=64.82 Aligned_cols=111 Identities=19% Similarity=0.264 Sum_probs=73.8
Q ss_pred HHHHhhc-CCCEEEEec-CCH-HHHHHHHHcCCcEEEEcCCCC------------------------CC----------C
Q 017718 215 KWLQTIT-KLPILVKGV-LTA-EDARIAVQAGAAGIIVSNHGA------------------------RQ----------L 257 (367)
Q Consensus 215 ~~l~~~~-~~Pv~vK~v-~~~-~~a~~~~~~G~d~i~vs~~gg------------------------~~----------~ 257 (367)
+.+|+.+ ++|+-+..- .++ .-++.+.++|+|.|.+..... +. .
T Consensus 78 ~~lr~~~p~~~ldvHLmv~~p~~~i~~~~~aGAd~itvH~Ea~~~~~~~i~~ir~~G~k~Gvalnp~Tp~e~l~~~l~~v 157 (246)
T 3inp_A 78 KALRDYGITAGMDVHLMVKPVDALIESFAKAGATSIVFHPEASEHIDRSLQLIKSFGIQAGLALNPATGIDCLKYVESNI 157 (246)
T ss_dssp HHHHHHTCCSCEEEEEECSSCHHHHHHHHHHTCSEEEECGGGCSCHHHHHHHHHTTTSEEEEEECTTCCSGGGTTTGGGC
T ss_pred HHHHHhCCCCeEEEEEeeCCHHHHHHHHHHcCCCEEEEccccchhHHHHHHHHHHcCCeEEEEecCCCCHHHHHHHHhcC
Confidence 4788877 789888775 444 347778899999999953111 00 0
Q ss_pred --------C---Cc----cchHHHHHHHHHHhc---CCCcEEEecCCCCHHHHHHHHHcCCCEEEechHHHHHhhccChH
Q 017718 258 --------D---YV----PATIMALEEVVKATQ---GRIPVFLDGGVRRGTDVFKALALGASGIFIGRPVVYSLAAEGEK 319 (367)
Q Consensus 258 --------~---~~----~~~~~~l~~i~~~~~---~~~~via~GGI~~~~dv~kal~lGAd~V~ig~~~l~~l~~~G~~ 319 (367)
+ +| +..++.++++++... .+++|.++|||. .+.+.++..+|||.+.+||+++-+ ..
T Consensus 158 D~VlvMsV~PGfgGQ~fi~~~l~KI~~lr~~~~~~~~~~~I~VDGGI~-~~ti~~~~~aGAD~~V~GSaIf~a---~d-- 231 (246)
T 3inp_A 158 DRVLIMSVNPGFGGQKFIPAMLDKAKEISKWISSTDRDILLEIDGGVN-PYNIAEIAVCGVNAFVAGSAIFNS---DS-- 231 (246)
T ss_dssp SEEEEECSCTTC--CCCCTTHHHHHHHHHHHHHHHTSCCEEEEESSCC-TTTHHHHHTTTCCEEEESHHHHTS---SC--
T ss_pred CEEEEeeecCCCCCcccchHHHHHHHHHHHHHHhcCCCeeEEEECCcC-HHHHHHHHHcCCCEEEEehHHhCC---CC--
Confidence 0 12 446666777665542 258999999998 578889999999999999976521 12
Q ss_pred HHHHHHHHHHHHH
Q 017718 320 GVRRVLEMLREEF 332 (367)
Q Consensus 320 ~v~~~i~~l~~el 332 (367)
..+.++.|++++
T Consensus 232 -p~~~i~~l~~~i 243 (246)
T 3inp_A 232 -YKQTIDKMRDEL 243 (246)
T ss_dssp -HHHHHHHHHHHH
T ss_pred -HHHHHHHHHHHH
Confidence 224555665544
|
| >1rpx_A Protein (ribulose-phosphate 3-epimerase); chloroplast, calvin cycle, oxidative pentose PH pathway; 2.30A {Solanum tuberosum} SCOP: c.1.2.2 | Back alignment and structure |
|---|
Probab=97.85 E-value=0.00041 Score=62.71 Aligned_cols=168 Identities=15% Similarity=0.110 Sum_probs=96.6
Q ss_pred HHHHHHHHHcCCcee-ecC----C---CCCCHHH---HHhhCCCceEEEEeecCCHHHHHHHHHHHHHcCCcEEEEecC-
Q 017718 91 YATARAASAAGTIMT-LSS----W---STSSVEE---VASTGPGIRFFQLYVYKDRNVVAQLVRRAERAGFKAIALTVD- 158 (367)
Q Consensus 91 ~~~a~aa~~~G~~~~-vs~----~---~~~~~e~---i~~~~~~~~~~QLy~~~d~~~~~~~l~ra~~~G~~ai~itvd- 158 (367)
...++++.+.|+.++ +.. + .....+. +.+..+.+..+.+|.. |++ +.++.+.++|++.+.++.+
T Consensus 26 ~~~i~~~~~~G~d~i~l~~~dg~f~~~~~~~~~~i~~l~~~~~~~~~v~l~vn-d~~---~~v~~~~~~Gad~v~vh~~~ 101 (230)
T 1rpx_A 26 GEQVKAIEQAGCDWIHVDVMDGRFVPNITIGPLVVDSLRPITDLPLDVHLMIV-EPD---QRVPDFIKAGADIVSVHCEQ 101 (230)
T ss_dssp HHHHHHHHHTTCCCEEEEEEBSSSSSCBCCCHHHHHHHGGGCCSCEEEEEESS-SHH---HHHHHHHHTTCSEEEEECST
T ss_pred HHHHHHHHHCCCCEEEEeeccCCcccccccCHHHHHHHHhccCCcEEEEEEec-CHH---HHHHHHHHcCCCEEEEEecC
Confidence 467788888887643 321 1 1223343 3333334667777753 543 4677788899999987665
Q ss_pred -CCCCCchhHHhhhhcCCCCccccccccccccCccccccchhhHHHhhhccCccccHHHHHhhcCCCEEEEec-CCHHHH
Q 017718 159 -TPRLGRREADIKNRFTLPPFLTLKNFQGLDLGKMDEANDSGLAAYVAGQIDRSLSWKWLQTITKLPILVKGV-LTAEDA 236 (367)
Q Consensus 159 -~p~~g~r~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~l~~~~~~Pv~vK~v-~~~~~a 236 (367)
.+-. ..+ ..+.+++ .++.+++-.. .+..+.
T Consensus 102 ~~~~~-------------------------------------~~~----------~~~~~~~-~g~~ig~~~~p~t~~e~ 133 (230)
T 1rpx_A 102 SSTIH-------------------------------------LHR----------TINQIKS-LGAKAGVVLNPGTPLTA 133 (230)
T ss_dssp TTCSC-------------------------------------HHH----------HHHHHHH-TTSEEEEEECTTCCGGG
T ss_pred ccchh-------------------------------------HHH----------HHHHHHH-cCCcEEEEeCCCCCHHH
Confidence 2100 000 0113333 2444443332 223333
Q ss_pred HHHHHcCCcEEEEcCC--CCCCCCCccchHHHHHHHHHHhc---CCCcEEEecCCCCHHHHHHHHHcCCCEEEechHHHH
Q 017718 237 RIAVQAGAAGIIVSNH--GARQLDYVPATIMALEEVVKATQ---GRIPVFLDGGVRRGTDVFKALALGASGIFIGRPVVY 311 (367)
Q Consensus 237 ~~~~~~G~d~i~vs~~--gg~~~~~~~~~~~~l~~i~~~~~---~~~~via~GGI~~~~dv~kal~lGAd~V~ig~~~l~ 311 (367)
......++|+|.+... |+......+...+.+.++++... .++|++++|||+ ++++.+++.+|||+|.+||++..
T Consensus 134 ~~~~~~~~d~vl~~~~~pg~~g~~~~~~~~~~i~~l~~~~~~~~~~~pi~v~GGI~-~~n~~~~~~aGad~vvvgSaI~~ 212 (230)
T 1rpx_A 134 IEYVLDAVDLVLIMSVNPGFGGQSFIESQVKKISDLRKICAERGLNPWIEVDGGVG-PKNAYKVIEAGANALVAGSAVFG 212 (230)
T ss_dssp GTTTTTTCSEEEEESSCTTCSSCCCCTTHHHHHHHHHHHHHHHTCCCEEEEESSCC-TTTHHHHHHHTCCEEEESHHHHT
T ss_pred HHHHHhhCCEEEEEEEcCCCCCccccHHHHHHHHHHHHHHHhcCCCceEEEECCCC-HHHHHHHHHcCCCEEEEChhhhC
Confidence 3334468998855432 22212222344555666665442 268999999998 78898999999999999998863
|
| >1w8s_A FBP aldolase, fructose-bisphosphate aldolase class I; TIM barrel, glycolytic, archaeal, catalytic mechanism, reaction intermediate, lyase; HET: FBP; 1.85A {Thermoproteus tenax} SCOP: c.1.10.1 PDB: 1w8r_A* 2yce_A* 1ojx_A 1ok4_A 1ok6_A | Back alignment and structure |
|---|
Probab=97.85 E-value=0.00048 Score=63.97 Aligned_cols=66 Identities=33% Similarity=0.548 Sum_probs=53.9
Q ss_pred HHHHHHcCCcEEEEcCCCCCCCCCccchHHHHHHHHHHhcCCCcEEEecCCC--CHHHHHHHH----HcCCCEEEechHH
Q 017718 236 ARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVR--RGTDVFKAL----ALGASGIFIGRPV 309 (367)
Q Consensus 236 a~~~~~~G~d~i~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~~~via~GGI~--~~~dv~kal----~lGAd~V~ig~~~ 309 (367)
++.+.++|+|+|.++- . ...+.+.++++.+ ..+||+++|||+ +.+|+++.+ ..||+++.+||.+
T Consensus 165 ~~~a~~~GAD~vkt~~-~--------~~~e~~~~~~~~~-~~~pV~asGGi~~~~~~~~l~~i~~~~~aGA~GvsvgraI 234 (263)
T 1w8s_A 165 ARIALELGADAMKIKY-T--------GDPKTFSWAVKVA-GKVPVLMSGGPKTKTEEDFLKQVEGVLEAGALGIAVGRNV 234 (263)
T ss_dssp HHHHHHHTCSEEEEEC-C--------SSHHHHHHHHHHT-TTSCEEEECCSCCSSHHHHHHHHHHHHHTTCCEEEESHHH
T ss_pred HHHHHHcCCCEEEEcC-C--------CCHHHHHHHHHhC-CCCeEEEEeCCCCCCHHHHHHHHHHHHHcCCeEEEEehhh
Confidence 5778999999999962 1 2457778887776 345999999999 889988877 7999999999988
Q ss_pred HH
Q 017718 310 VY 311 (367)
Q Consensus 310 l~ 311 (367)
+.
T Consensus 235 ~~ 236 (263)
T 1w8s_A 235 WQ 236 (263)
T ss_dssp HT
T ss_pred cC
Confidence 75
|
| >1h5y_A HISF; histidine biosynthesis, TIM-barrel; 2.0A {Pyrobaculum aerophilum} SCOP: c.1.2.1 | Back alignment and structure |
|---|
Probab=97.84 E-value=6.1e-05 Score=68.43 Aligned_cols=76 Identities=26% Similarity=0.308 Sum_probs=60.5
Q ss_pred CHHHHHHHHHcCCcEEEEcCCCCCCCCCccchHHHHHHHHHHhcCCCcEEEecCCCCHHHHHHHHHcCCCEEEechHHH
Q 017718 232 TAEDARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFIGRPVV 310 (367)
Q Consensus 232 ~~~~a~~~~~~G~d~i~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~~~via~GGI~~~~dv~kal~lGAd~V~ig~~~l 310 (367)
..+.++.+.++|+|+|.++...+.. .......+.+.++++.+ ++||++.|||.+.+++.+++.+|||+|.++++.+
T Consensus 35 ~~~~a~~~~~~G~d~i~v~~~~~~~-~~~~~~~~~i~~i~~~~--~ipvi~~g~i~~~~~~~~~~~~Gad~V~i~~~~~ 110 (253)
T 1h5y_A 35 PVEMAVRYEEEGADEIAILDITAAP-EGRATFIDSVKRVAEAV--SIPVLVGGGVRSLEDATTLFRAGADKVSVNTAAV 110 (253)
T ss_dssp HHHHHHHHHHTTCSCEEEEECCCCT-TTHHHHHHHHHHHHHHC--SSCEEEESSCCSHHHHHHHHHHTCSEEEESHHHH
T ss_pred HHHHHHHHHHcCCCEEEEEeCCccc-cCCcccHHHHHHHHHhc--CCCEEEECCCCCHHHHHHHHHcCCCEEEEChHHh
Confidence 3577899999999999997532211 12234566778887766 7999999999999999999999999999999875
|
| >2fli_A Ribulose-phosphate 3-epimerase; (beta/alpha)8-barrel, D- xylitol 5-phosphate, isomerase; HET: DX5; 1.80A {Streptococcus pyogenes} SCOP: c.1.2.2 | Back alignment and structure |
|---|
Probab=97.80 E-value=0.00017 Score=64.56 Aligned_cols=168 Identities=13% Similarity=0.124 Sum_probs=94.0
Q ss_pred HHHHHHHHHcCCcee---e--cCC-CCCC--HHH---HHhhCCCceEEEEeecCCHHHHHHHHHHHHHcCCcEEEEecCC
Q 017718 91 YATARAASAAGTIMT---L--SSW-STSS--VEE---VASTGPGIRFFQLYVYKDRNVVAQLVRRAERAGFKAIALTVDT 159 (367)
Q Consensus 91 ~~~a~aa~~~G~~~~---v--s~~-~~~~--~e~---i~~~~~~~~~~QLy~~~d~~~~~~~l~ra~~~G~~ai~itvd~ 159 (367)
...++.+.+.|+.+. + +++ ...+ .+. +.+..+.+..+-++. .|++. .++.+.++|++.+.++...
T Consensus 19 ~~~~~~~~~~G~~~i~~~~~dg~~~~~~~~g~~~i~~i~~~~~~~~~v~l~v-~d~~~---~i~~~~~~gad~v~vh~~~ 94 (220)
T 2fli_A 19 ASELARIEETDAEYVHIDIMDGQFVPNISFGADVVASMRKHSKLVFDCHLMV-VDPER---YVEAFAQAGADIMTIHTES 94 (220)
T ss_dssp HHHHHHHHHTTCCEEEEEEEBSSSSSCBCBCHHHHHHHHTTCCSEEEEEEES-SSGGG---GHHHHHHHTCSEEEEEGGG
T ss_pred HHHHHHHHHcCCCEEEEEeecCCCCCccccCHHHHHHHHHhCCCCEEEEEee-cCHHH---HHHHHHHcCCCEEEEccCc
Confidence 467788888887542 2 331 1112 443 333333355556664 34432 3477788999998886642
Q ss_pred CCCCchhHHhhhhcCCCCccccccccccccCccccccchhhHHHhhhccCccccHHHHHhhcCCCEEEEec-CCHHHHHH
Q 017718 160 PRLGRREADIKNRFTLPPFLTLKNFQGLDLGKMDEANDSGLAAYVAGQIDRSLSWKWLQTITKLPILVKGV-LTAEDARI 238 (367)
Q Consensus 160 p~~g~r~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~l~~~~~~Pv~vK~v-~~~~~a~~ 238 (367)
+-. .....+.+++ .+.++++-.. .+..+...
T Consensus 95 ~~~-----------------------------------------------~~~~~~~~~~-~g~~i~~~~~~~t~~e~~~ 126 (220)
T 2fli_A 95 TRH-----------------------------------------------IHGALQKIKA-AGMKAGVVINPGTPATALE 126 (220)
T ss_dssp CSC-----------------------------------------------HHHHHHHHHH-TTSEEEEEECTTSCGGGGG
T ss_pred ccc-----------------------------------------------HHHHHHHHHH-cCCcEEEEEcCCCCHHHHH
Confidence 100 0000113433 2444433321 23333333
Q ss_pred HHHcCCcEEEEcC-C-CCCCCCCccchHHHHHHHHHHhc---CCCcEEEecCCCCHHHHHHHHHcCCCEEEechHHHH
Q 017718 239 AVQAGAAGIIVSN-H-GARQLDYVPATIMALEEVVKATQ---GRIPVFLDGGVRRGTDVFKALALGASGIFIGRPVVY 311 (367)
Q Consensus 239 ~~~~G~d~i~vs~-~-gg~~~~~~~~~~~~l~~i~~~~~---~~~~via~GGI~~~~dv~kal~lGAd~V~ig~~~l~ 311 (367)
....++|+|.+.. + |+......+...+.+.++++... .++|++++|||+ .+++.+++.+|||+|.+||++..
T Consensus 127 ~~~~~~d~vl~~~~~~g~~g~~~~~~~~~~i~~~~~~~~~~~~~~~i~v~GGI~-~~~~~~~~~~Gad~vvvGsai~~ 203 (220)
T 2fli_A 127 PLLDLVDQVLIMTVNPGFGGQAFIPECLEKVATVAKWRDEKGLSFDIEVDGGVD-NKTIRACYEAGANVFVAGSYLFK 203 (220)
T ss_dssp GGTTTCSEEEEESSCTTCSSCCCCGGGHHHHHHHHHHHHHTTCCCEEEEESSCC-TTTHHHHHHHTCCEEEESHHHHT
T ss_pred HHHhhCCEEEEEEECCCCcccccCHHHHHHHHHHHHHHHhcCCCceEEEECcCC-HHHHHHHHHcCCCEEEEChHHhC
Confidence 3446799886632 2 22222223444555655655442 268999999999 79999998999999999999864
|
| >1vhc_A Putative KHG/KDPG aldolase; structural genomics, unknown function; HET: MSE; 1.89A {Haemophilus influenzae} SCOP: c.1.10.1 | Back alignment and structure |
|---|
Probab=97.79 E-value=0.00014 Score=66.14 Aligned_cols=85 Identities=18% Similarity=0.231 Sum_probs=64.4
Q ss_pred HHHhhcCCCEEEEecCCHHHHHHHHHcCCcEEEEcCCCCCCCCCccchHHHHHHHHHHhcCCCcEEEecCCCCHHHHHHH
Q 017718 216 WLQTITKLPILVKGVLTAEDARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKA 295 (367)
Q Consensus 216 ~l~~~~~~Pv~vK~v~~~~~a~~~~~~G~d~i~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~~~via~GGI~~~~dv~ka 295 (367)
..++ .+.|+++ ++.+++++..+.+.|+|+|.+.. .. . ..-.+.|++++..++ ++|+++.||| +.+++...
T Consensus 105 ~ar~-~g~~~i~-Gv~t~~e~~~A~~~Gad~vk~Fp--a~-~---~gG~~~lk~l~~~~~-~ipvvaiGGI-~~~N~~~~ 174 (224)
T 1vhc_A 105 LCQD-LNFPITP-GVNNPMAIEIALEMGISAVKFFP--AE-A---SGGVKMIKALLGPYA-QLQIMPTGGI-GLHNIRDY 174 (224)
T ss_dssp HHHH-TTCCEEC-EECSHHHHHHHHHTTCCEEEETT--TT-T---TTHHHHHHHHHTTTT-TCEEEEBSSC-CTTTHHHH
T ss_pred HHHH-hCCCEEe-ccCCHHHHHHHHHCCCCEEEEee--Cc-c---ccCHHHHHHHHhhCC-CCeEEEECCc-CHHHHHHH
Confidence 4444 7888877 58899999999999999999932 10 0 112566777765553 6999999999 45789999
Q ss_pred HHc-CCCEEEechHHHH
Q 017718 296 LAL-GASGIFIGRPVVY 311 (367)
Q Consensus 296 l~l-GAd~V~ig~~~l~ 311 (367)
+.+ |+++|. |+.+.-
T Consensus 175 l~agga~~v~-gS~i~~ 190 (224)
T 1vhc_A 175 LAIPNIVACG-GSWFVE 190 (224)
T ss_dssp HTSTTBCCEE-ECGGGC
T ss_pred HhcCCCEEEE-EchhcC
Confidence 998 999999 886653
|
| >1wbh_A KHG/KDPG aldolase; lyase; 1.55A {Escherichia coli} SCOP: c.1.10.1 PDB: 2c0a_A 1wau_A 1eua_A 1eun_A 1fq0_A* 1fwr_A* | Back alignment and structure |
|---|
Probab=97.76 E-value=0.00024 Score=64.06 Aligned_cols=85 Identities=19% Similarity=0.221 Sum_probs=64.6
Q ss_pred HHHhhcCCCEEEEecCCHHHHHHHHHcCCcEEEEcCCCCCCCCCccchHHHHHHHHHHhcCCCcEEEecCCCCHHHHHHH
Q 017718 216 WLQTITKLPILVKGVLTAEDARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKA 295 (367)
Q Consensus 216 ~l~~~~~~Pv~vK~v~~~~~a~~~~~~G~d~i~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~~~via~GGI~~~~dv~ka 295 (367)
..++..+.|++. ++.+++++..+.++|+|+|.+.. .. . ..-.+.|.+++..++ ++|+++.|||. .+++...
T Consensus 103 ~~~~~~g~~~i~-G~~t~~e~~~A~~~Gad~v~~Fp--a~-~---~gG~~~lk~i~~~~~-~ipvvaiGGI~-~~n~~~~ 173 (214)
T 1wbh_A 103 KAATEGTIPLIP-GISTVSELMLGMDYGLKEFKFFP--AE-A---NGGVKALQAIAGPFS-QVRFCPTGGIS-PANYRDY 173 (214)
T ss_dssp HHHHHSSSCEEE-EESSHHHHHHHHHTTCCEEEETT--TT-T---TTHHHHHHHHHTTCT-TCEEEEBSSCC-TTTHHHH
T ss_pred HHHHHhCCCEEE-ecCCHHHHHHHHHCCCCEEEEec--Cc-c---ccCHHHHHHHhhhCC-CCeEEEECCCC-HHHHHHH
Confidence 444557888877 58999999999999999999932 11 1 112566777765443 79999999994 5889999
Q ss_pred HHc-CCCEEEechHHH
Q 017718 296 LAL-GASGIFIGRPVV 310 (367)
Q Consensus 296 l~l-GAd~V~ig~~~l 310 (367)
+.+ |+++|. |+.+.
T Consensus 174 l~agg~~~v~-gS~i~ 188 (214)
T 1wbh_A 174 LALKSVLCIG-GSWLV 188 (214)
T ss_dssp HTSTTBSCEE-EGGGS
T ss_pred HhcCCCeEEE-ecccc
Confidence 998 899999 88665
|
| >2y88_A Phosphoribosyl isomerase A; aromatic amino acid biosynthesis, TIM-barrel, His biosynthesis, tryptophan biosynthesis; HET: 2ER; 1.33A {Mycobacterium tuberculosis} PDB: 2y89_A 2y85_A* | Back alignment and structure |
|---|
Probab=97.70 E-value=0.00018 Score=65.41 Aligned_cols=75 Identities=25% Similarity=0.268 Sum_probs=60.1
Q ss_pred HHHHHHHHHcCCcEEEEcCCCCCCCCCccchHHHHHHHHHHhcCCCcEEEecCCCCHHHHHHHHHcCCCEEEechHHHH
Q 017718 233 AEDARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFIGRPVVY 311 (367)
Q Consensus 233 ~~~a~~~~~~G~d~i~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~~~via~GGI~~~~dv~kal~lGAd~V~ig~~~l~ 311 (367)
.+.++.+.++|+|.|.+..-.+. ....+.. +.+.++++.+ ++|+++.|||++++++.+++.+|||.|.+|+..+.
T Consensus 34 ~~~a~~~~~~Gad~i~v~~~d~~-~~~~~~~-~~i~~i~~~~--~ipv~v~ggi~~~~~~~~~l~~Gad~V~lg~~~l~ 108 (244)
T 2y88_A 34 VDAALGWQRDGAEWIHLVDLDAA-FGRGSNH-ELLAEVVGKL--DVQVELSGGIRDDESLAAALATGCARVNVGTAALE 108 (244)
T ss_dssp HHHHHHHHHTTCSEEEEEEHHHH-TTSCCCH-HHHHHHHHHC--SSEEEEESSCCSHHHHHHHHHTTCSEEEECHHHHH
T ss_pred HHHHHHHHHcCCCEEEEEcCccc-ccCCChH-HHHHHHHHhc--CCcEEEECCCCCHHHHHHHHHcCCCEEEECchHhh
Confidence 46788999999999999642111 1223344 7888888776 79999999999999999999999999999997653
|
| >3glc_A Aldolase LSRF; TIM barrel, lyase, schiff base; HET: R5P; 2.50A {Escherichia coli} PDB: 3gnd_A* 3gkf_O | Back alignment and structure |
|---|
Probab=97.69 E-value=0.00066 Score=64.12 Aligned_cols=79 Identities=25% Similarity=0.397 Sum_probs=55.7
Q ss_pred hcCCCEEEEe------cCCHH----HHHHHHHcCCcEEEEcCCCCCCCCCccchHHHHHHHHHHhcCCCcEEEecCCCCH
Q 017718 220 ITKLPILVKG------VLTAE----DARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRG 289 (367)
Q Consensus 220 ~~~~Pv~vK~------v~~~~----~a~~~~~~G~d~i~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~~~via~GGI~~~ 289 (367)
.+++|+++=. ..+.+ .++.+.++|+|+|.++-.+ +.+.++.+.. ++||++.||+...
T Consensus 169 ~~GlpvIie~~~G~~~~~d~e~i~~aariA~elGAD~VKt~~t~-----------e~~~~vv~~~--~vPVv~~GG~~~~ 235 (295)
T 3glc_A 169 KVGMPTMAVTGVGKDMVRDQRYFSLATRIAAEMGAQIIKTYYVE-----------KGFERIVAGC--PVPIVIAGGKKLP 235 (295)
T ss_dssp TTTCCEEEEECC----CCSHHHHHHHHHHHHHTTCSEEEEECCT-----------TTHHHHHHTC--SSCEEEECCSCCC
T ss_pred HcCCEEEEECCCCCccCCCHHHHHHHHHHHHHhCCCEEEeCCCH-----------HHHHHHHHhC--CCcEEEEECCCCC
Confidence 3578887611 12332 4788999999999986221 2356666544 7999999999853
Q ss_pred -H----HHHHHHHcCCCEEEechHHHH
Q 017718 290 -T----DVFKALALGASGIFIGRPVVY 311 (367)
Q Consensus 290 -~----dv~kal~lGAd~V~ig~~~l~ 311 (367)
+ .+.+++.+||+++.+||.++.
T Consensus 236 ~~~~l~~v~~ai~aGA~Gv~vGRnI~q 262 (295)
T 3glc_A 236 EREALEMCWQAIDQGASGVDMGRNIFQ 262 (295)
T ss_dssp HHHHHHHHHHHHHTTCSEEEESHHHHT
T ss_pred HHHHHHHHHHHHHhCCeEEEeHHHHhc
Confidence 3 355666899999999998875
|
| >3vk5_A MOEO5; TIM barrel, transferase; HET: FPQ; 1.39A {Streptomyces ghanaensis} PDB: 3vka_A* 3vkb_A* 3vkc_A* 3vkd_A* | Back alignment and structure |
|---|
Probab=97.69 E-value=0.00012 Score=68.34 Aligned_cols=69 Identities=17% Similarity=0.161 Sum_probs=56.4
Q ss_pred HHHHHHcCCcEEEEcCCCCCCCCCccchHHHHHHHHHHhcCCCcEEEecCCCCHHHHHHHHHcCCCEEEechHHH
Q 017718 236 ARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFIGRPVV 310 (367)
Q Consensus 236 a~~~~~~G~d~i~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~~~via~GGI~~~~dv~kal~lGAd~V~ig~~~l 310 (367)
+..+.+.|...+.+...+ .+...+.+.++++.+...+||++-|||++.+|+.+++.+|||.|.+|+.++
T Consensus 192 a~~gad~G~~lV~LD~~~------~~v~~e~V~~I~~~~~~~iPV~vGGGIrs~Eda~~ll~aGAD~VVVGSAav 260 (286)
T 3vk5_A 192 LHVARAFGFHMVYLYSRN------EHVPPEVVRHFRKGLGPDQVLFVSGNVRSGRQVTEYLDSGADYVGFAGALE 260 (286)
T ss_dssp HHHHHHTTCSEEEEECSS------SCCCHHHHHHHHHHSCTTCEEEEESSCCSHHHHHHHHHTTCSEEEESGGGS
T ss_pred HHHHHHcCCCEEEEcCCC------CcCCHHHHHHHHHhcCCCCCEEEEeCCCCHHHHHHHHHcCCCEEEECchhh
Confidence 455567788888887422 345678888888876436999999999999999999999999999999775
|
| >1qo2_A Molecule: N-((5-phosphoribosyl)-formimino)-5-aminoimidazol- 4-carboxamid ribonucleotid...; isomerase, histidine biosynthesis; 1.85A {Thermotoga maritima} SCOP: c.1.2.1 PDB: 2cff_A 2w79_A | Back alignment and structure |
|---|
Probab=97.66 E-value=3.8e-05 Score=70.13 Aligned_cols=75 Identities=17% Similarity=0.140 Sum_probs=58.7
Q ss_pred HHHHHHHHHcCCcEEEEcCCCCCCCCCccchHHHHHHHHHHhcCCCcEEEecCCCCHHHHHHHHHcCCCEEEechHHHH
Q 017718 233 AEDARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFIGRPVVY 311 (367)
Q Consensus 233 ~~~a~~~~~~G~d~i~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~~~via~GGI~~~~dv~kal~lGAd~V~ig~~~l~ 311 (367)
.+.++.+.++|+|.|.++...+.. ......++.+.+++ .. .+||++.|||++.+++.+++.+|||+|++|+..+-
T Consensus 33 ~~~a~~~~~~Gad~i~v~d~~~~~-~~~~~~~~~i~~i~-~~--~ipvi~~Ggi~~~~~~~~~~~~Gad~V~lg~~~l~ 107 (241)
T 1qo2_A 33 VELVEKLIEEGFTLIHVVDLSNAI-ENSGENLPVLEKLS-EF--AEHIQIGGGIRSLDYAEKLRKLGYRRQIVSSKVLE 107 (241)
T ss_dssp HHHHHHHHHTTCCCEEEEEHHHHH-HCCCTTHHHHHHGG-GG--GGGEEEESSCCSHHHHHHHHHTTCCEEEECHHHHH
T ss_pred HHHHHHHHHcCCCEEEEecccccc-cCCchhHHHHHHHH-hc--CCcEEEECCCCCHHHHHHHHHCCCCEEEECchHhh
Confidence 467899999999999996521100 01234577777776 44 79999999999999999999999999999998763
|
| >3s1x_A Probable transaldolase; alpha-beta barrel, conformational selection, domain swapping transferase; HET: I22; 1.65A {Thermoplasma acidophilum} PDB: 3s1u_A* 3s1v_A* 3s0c_A* 3s1w_A* | Back alignment and structure |
|---|
Probab=97.63 E-value=0.0026 Score=57.44 Aligned_cols=181 Identities=13% Similarity=0.141 Sum_probs=116.8
Q ss_pred hhHHHHHHHHHcCCceeecCCC---------CCCHH----HHHhhCCCceEEEEeecCCHHHHHHHHHHHHHcCCcEEEE
Q 017718 89 GEYATARAASAAGTIMTLSSWS---------TSSVE----EVASTGPGIRFFQLYVYKDRNVVAQLVRRAERAGFKAIAL 155 (367)
Q Consensus 89 ~e~~~a~aa~~~G~~~~vs~~~---------~~~~e----~i~~~~~~~~~~QLy~~~d~~~~~~~l~ra~~~G~~ai~i 155 (367)
.|+.-.+.+.+.|+.-.++|.. ....+ ++++..+++..+|+. ..|.+.+.+..++..+.+ +-++|
T Consensus 8 An~~ei~~~~~~g~i~GVTTNPsli~k~~~~g~~~~~~~~ei~~~v~G~Vs~EV~-a~d~e~mi~eA~~L~~~~-~nv~I 85 (223)
T 3s1x_A 8 ANIDEIRTGVNWGIVDGVTTNPTLISKEAVNGKKYGDIIREILKIVDGPVSVEVV-STKYEGMVEEARKIHGLG-DNAVV 85 (223)
T ss_dssp CCHHHHHHHHHHTCCCEEECCHHHHHHHSCTTCCHHHHHHHHHHHCSSCEEEECC-CCSHHHHHHHHHHHHHTC-TTEEE
T ss_pred CCHHHHHHHHhcCCcccccCCHHHHHhhhccCCCHHHHHHHHHHhCCCCEEEEEc-cCCHHHHHHHHHHHHHhC-CCEEE
Confidence 4677778888888877776542 23333 344555677888887 456665555555554543 22333
Q ss_pred ecCCCCCCchhHHhhhhcCCCCccccccccccccCccccccchhhHHHhhhccCccccHH------HHHhhcCCCEEEEe
Q 017718 156 TVDTPRLGRREADIKNRFTLPPFLTLKNFQGLDLGKMDEANDSGLAAYVAGQIDRSLSWK------WLQTITKLPILVKG 229 (367)
Q Consensus 156 tvd~p~~g~r~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~------~l~~~~~~Pv~vK~ 229 (367)
-+- .+|+ .|.+ -++++-+-.
T Consensus 86 KIP-----------------------------------------------------~T~eGl~A~~~L~~-~GI~vn~Tl 111 (223)
T 3s1x_A 86 KIP-----------------------------------------------------MTEDGLRAIKTLSS-EHINTNCTL 111 (223)
T ss_dssp EEE-----------------------------------------------------SSHHHHHHHHHHHH-TTCCEEEEE
T ss_pred EeC-----------------------------------------------------CCHHHHHHHHHHHH-CCCcEEEEE
Confidence 211 0222 3333 389999999
Q ss_pred cCCHHHHHHHHHcCCcEEEEcCCCCCCCCCccchHHHHHHHHHHh---cCCCcEEEecCCCCHHHHHHHHHcCCCEEEec
Q 017718 230 VLTAEDARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKAT---QGRIPVFLDGGVRRGTDVFKALALGASGIFIG 306 (367)
Q Consensus 230 v~~~~~a~~~~~~G~d~i~vs~~gg~~~~~~~~~~~~l~~i~~~~---~~~~~via~GGI~~~~dv~kal~lGAd~V~ig 306 (367)
+.+...|..|.++|+++|... =||-.|++.+..+.+.++.+.. +.+..|++.+ +|+..++.++..+|||.+-+.
T Consensus 112 ifS~~QA~~Aa~AGa~yISPf--vgRi~d~g~dG~~~v~~i~~~~~~~~~~T~IlaAS-~Rn~~~v~~aa~~G~d~~Tip 188 (223)
T 3s1x_A 112 VFNPIQALLAAKAGVTYVSPF--VGRLDDIGEDGMQIIDMIRTIFNNYIIKTQILVAS-IRNPIHVLRSAVIGADVVTVP 188 (223)
T ss_dssp ECSHHHHHHHHHTTCSEEEEB--SHHHHHTTSCTHHHHHHHHHHHHHTTCCSEEEEBS-CCSHHHHHHHHHHTCSEEEEC
T ss_pred eCCHHHHHHHHHcCCeEEEee--cchHhhcCCCHHHHHHHHHHHHHHcCCCCEEEEEe-CCCHHHHHHHHHcCCCEEEeC
Confidence 999999999999999988763 3443344444455555555433 3356666655 999999999999999999999
Q ss_pred hHHHHHhhccC--hHHHHHHHHHH
Q 017718 307 RPVVYSLAAEG--EKGVRRVLEML 328 (367)
Q Consensus 307 ~~~l~~l~~~G--~~~v~~~i~~l 328 (367)
-.++..+..+- ..|++.+.+.|
T Consensus 189 ~~vl~~l~~hpltd~~~~~F~~Dw 212 (223)
T 3s1x_A 189 FNVLKSLMKHPKTDEGLAKFLEDW 212 (223)
T ss_dssp HHHHHHTTCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCcHHHHHHHHHHHH
Confidence 88887665322 24555555554
|
| >1vcv_A Probable deoxyribose-phosphate aldolase; DERA, hyperthermophIle, archaea, lyase; 2.00A {Pyrobaculum aerophilum} SCOP: c.1.10.1 | Back alignment and structure |
|---|
Probab=97.63 E-value=0.0015 Score=59.38 Aligned_cols=90 Identities=24% Similarity=0.206 Sum_probs=59.3
Q ss_pred HHHHhhcCCCEEEEec-----CCHHH----HHHHHHcCCcEEEEcCCCCC-------CCCCccch---HHHHHHHHHHhc
Q 017718 215 KWLQTITKLPILVKGV-----LTAED----ARIAVQAGAAGIIVSNHGAR-------QLDYVPAT---IMALEEVVKATQ 275 (367)
Q Consensus 215 ~~l~~~~~~Pv~vK~v-----~~~~~----a~~~~~~G~d~i~vs~~gg~-------~~~~~~~~---~~~l~~i~~~~~ 275 (367)
..+++..+- ..+|.+ ++.+. ++.+.++|+|+|-.|. |-. ..+.+..+ .+.+++..+.++
T Consensus 105 ~~v~~a~~~-~~lKvIlEt~~Lt~eei~~a~~ia~eaGADfVKTST-Gf~~~~~~~~~~~~~gAt~~dv~lm~~~i~~~g 182 (226)
T 1vcv_A 105 ISVVGAAGG-RVVKVITEEPYLRDEERYTLYDIIAEAGAHFIKSST-GFAEEAYAARQGNPVHSTPERAAAIARYIKEKG 182 (226)
T ss_dssp HHHHHHTTT-SEEEEECCGGGCCHHHHHHHHHHHHHHTCSEEECCC-SCCCHHHHHHTTCCSSCCHHHHHHHHHHHHHHT
T ss_pred HHHHHHHcC-CCceEEEeccCCCHHHHHHHHHHHHHcCCCEEEeCC-CCCccccccccCCCCCCCHHHHHHHHHHHHHhC
Confidence 355555432 256643 34433 6778999999999873 211 01122233 444455444477
Q ss_pred CCCcEEEecCCCCHHHHHHHHHc---CCC----EEEec
Q 017718 276 GRIPVFLDGGVRRGTDVFKALAL---GAS----GIFIG 306 (367)
Q Consensus 276 ~~~~via~GGI~~~~dv~kal~l---GAd----~V~ig 306 (367)
.+++|-++|||++.+|+++++.+ ||+ -++..
T Consensus 183 ~~v~vKaaGGirt~~~al~~i~a~~~Ga~~~~fRiGtS 220 (226)
T 1vcv_A 183 YRLGVKMAGGIRTREQAKAIVDAIGWGEDPARVRLGTS 220 (226)
T ss_dssp CCCEEEEESSCCSHHHHHHHHHHHCSCSCTTTEEEEES
T ss_pred CCceEEEeCCCCCHHHHHHHHHHHHCCCCcCCceEecC
Confidence 78999999999999999999999 999 66544
|
| >1qap_A Quinolinic acid phosphoribosyltransferase; glycosyltransferase, NAD biosynthesis; HET: NTM; 2.80A {Salmonella typhimurium} SCOP: c.1.17.1 d.41.2.1 | Back alignment and structure |
|---|
Probab=97.62 E-value=0.00036 Score=66.01 Aligned_cols=84 Identities=21% Similarity=0.205 Sum_probs=66.4
Q ss_pred HHHHHhhcCC-CEEEEecCCHHHHHHHHHcCCcEEEEcCCCCCCCCCccchHHHHHHHHHHhcCCCcEEEecCCCCHHHH
Q 017718 214 WKWLQTITKL-PILVKGVLTAEDARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDV 292 (367)
Q Consensus 214 ~~~l~~~~~~-Pv~vK~v~~~~~a~~~~~~G~d~i~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~~~via~GGI~~~~dv 292 (367)
++.+++..+- ++++ .+-+.++++.+.++|+|+|.++| .+.+.+.++++.++++++|.++||| +.+.+
T Consensus 199 i~~~r~~~~~~kI~v-ev~tlee~~eA~~aGaD~I~ld~----------~~~e~l~~~v~~~~~~~~I~ASGGI-t~~~i 266 (296)
T 1qap_A 199 VEKAFWLHPDVPVEV-EVENLDELDDALKAGADIIMLDN----------FNTDQMREAVKRVNGQARLEVSGNV-TAETL 266 (296)
T ss_dssp HHHHHHHSTTSCEEE-EESSHHHHHHHHHTTCSEEEESS----------CCHHHHHHHHHTTCTTCCEEECCCS-CHHHH
T ss_pred HHHHHHhCCCCcEEE-EeCCHHHHHHHHHcCCCEEEECC----------CCHHHHHHHHHHhCCCCeEEEECCC-CHHHH
Confidence 3355555532 5555 56788999999999999999976 3446666776666668999999999 99999
Q ss_pred HHHHHcCCCEEEechHH
Q 017718 293 FKALALGASGIFIGRPV 309 (367)
Q Consensus 293 ~kal~lGAd~V~ig~~~ 309 (367)
.+....|+|.+.+|+..
T Consensus 267 ~~~a~~GvD~isvGsli 283 (296)
T 1qap_A 267 REFAETGVDFISVGALT 283 (296)
T ss_dssp HHHHHTTCSEEECSHHH
T ss_pred HHHHHcCCCEEEEeHHH
Confidence 99999999999999843
|
| >1vzw_A Phosphoribosyl isomerase A; histidine biosynthesis, tryptophan biosynthesis; 1.8A {Streptomyces coelicolor} SCOP: c.1.2.1 PDB: 2vep_A 2x30_A | Back alignment and structure |
|---|
Probab=97.61 E-value=0.00012 Score=66.70 Aligned_cols=74 Identities=26% Similarity=0.308 Sum_probs=59.1
Q ss_pred HHHHHHHHHcCCcEEEEcCCCCCCCCCccchHHHHHHHHHHhcCCCcEEEecCCCCHHHHHHHHHcCCCEEEechHHH
Q 017718 233 AEDARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFIGRPVV 310 (367)
Q Consensus 233 ~~~a~~~~~~G~d~i~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~~~via~GGI~~~~dv~kal~lGAd~V~ig~~~l 310 (367)
.+.++.+.++|+|.|.+..-.+. ..+.... +.+.++++.. ++|+++.|||++++++.+++.+|||.|.+|+..+
T Consensus 35 ~~~a~~~~~~Gad~i~v~~~d~~-~~~~~~~-~~i~~i~~~~--~ipv~v~ggI~~~~~~~~~l~~Gad~V~lg~~~l 108 (244)
T 1vzw_A 35 LEAALAWQRSGAEWLHLVDLDAA-FGTGDNR-ALIAEVAQAM--DIKVELSGGIRDDDTLAAALATGCTRVNLGTAAL 108 (244)
T ss_dssp HHHHHHHHHTTCSEEEEEEHHHH-HTSCCCH-HHHHHHHHHC--SSEEEEESSCCSHHHHHHHHHTTCSEEEECHHHH
T ss_pred HHHHHHHHHcCCCEEEEecCchh-hcCCChH-HHHHHHHHhc--CCcEEEECCcCCHHHHHHHHHcCCCEEEECchHh
Confidence 46688899999999998642111 1122345 7788888776 7999999999999999999999999999999765
|
| >2w6r_A Imidazole glycerol phosphate synthase subunit HISF; lyase, fusion protein, cobalamin, precorrin, novel fold, VIT; 2.10A {Thermotoga maritima} | Back alignment and structure |
|---|
Probab=97.59 E-value=8.7e-05 Score=68.56 Aligned_cols=76 Identities=14% Similarity=0.142 Sum_probs=59.1
Q ss_pred CHHHHHHHHHcCCcEEEEcCCCCCCCCCccchHHHHHHHHHHhcCCCcEEEecCCCCHHHHHHHHHcCCCEEEechHHH
Q 017718 232 TAEDARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFIGRPVV 310 (367)
Q Consensus 232 ~~~~a~~~~~~G~d~i~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~~~via~GGI~~~~dv~kal~lGAd~V~ig~~~l 310 (367)
..+.++.+.++|++.|.++.-.+... .....++.+.++++.+ ++||++.|||++.+|+.+++.+|||+|.+|+.++
T Consensus 32 ~~~~a~~~~~~Ga~~i~v~d~~~~~~-~~g~~~~~i~~i~~~~--~iPvi~~ggi~~~~~i~~~~~~Gad~v~lg~~~~ 107 (266)
T 2w6r_A 32 LRDWVVEVEKRGAGEILLTSIDRDGT-KSGYDTEMIRFVRPLT--TLPIIASGGAGKMEHFLEAFLAGADKALAASVFH 107 (266)
T ss_dssp HHHHHHHHHHHTCSEEEEEETTTSSC-SSCCCHHHHHHHGGGC--CSCEEEESCCCSTHHHHHHHHHTCSEEECCCCC-
T ss_pred HHHHHHHHHHCCCCEEEEEecCcccC-CCcccHHHHHHHHHhc--CCCEEEECCCCCHHHHHHHHHcCCcHhhhhHHHH
Confidence 35678899999999999965221111 1124577788877655 7999999999999999999999999999999776
|
| >3ajx_A 3-hexulose-6-phosphate synthase; HPS, OMPDC suprafamily, LYA; 1.60A {Mycobacterium gastri} | Back alignment and structure |
|---|
Probab=97.59 E-value=0.00079 Score=59.63 Aligned_cols=75 Identities=20% Similarity=0.166 Sum_probs=50.2
Q ss_pred CHHH-HHHHHHcCCcEEEEcCCCCCCCCCccchH-HHHHHHHHHhcCCCcEEEecCCCCHHHHHHHHHcCCCEEEechHH
Q 017718 232 TAED-ARIAVQAGAAGIIVSNHGARQLDYVPATI-MALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFIGRPV 309 (367)
Q Consensus 232 ~~~~-a~~~~~~G~d~i~vs~~gg~~~~~~~~~~-~~l~~i~~~~~~~~~via~GGI~~~~dv~kal~lGAd~V~ig~~~ 309 (367)
++++ ++.+.+.|+|.+.+.- +......+.... +.++++... ++|+++.|||+ .+++.+++..|||+|.+||++
T Consensus 115 ~p~~~~~~~~~~g~d~v~~~~-~~~~~~~g~~~~~~~i~~~~~~---~~pi~v~GGI~-~~~~~~~~~aGad~vvvGsaI 189 (207)
T 3ajx_A 115 DKATRAQEVRALGAKFVEMHA-GLDEQAKPGFDLNGLLAAGEKA---RVPFSVAGGVK-VATIPAVQKAGAEVAVAGGAI 189 (207)
T ss_dssp SHHHHHHHHHHTTCSEEEEEC-CHHHHTSTTCCTHHHHHHHHHH---TSCEEEESSCC-GGGHHHHHHTTCSEEEESHHH
T ss_pred ChHHHHHHHHHhCCCEEEEEe-cccccccCCCchHHHHHHhhCC---CCCEEEECCcC-HHHHHHHHHcCCCEEEEeeec
Confidence 5554 6777788999984431 100001111111 445554432 68999999998 788889999999999999998
Q ss_pred HH
Q 017718 310 VY 311 (367)
Q Consensus 310 l~ 311 (367)
+.
T Consensus 190 ~~ 191 (207)
T 3ajx_A 190 YG 191 (207)
T ss_dssp HT
T ss_pred cC
Confidence 64
|
| >1mxs_A KDPG aldolase; 2-keto-3-deoxy-6-phosphogluconate aldolase, sulfate, beta-BA lyase; 2.20A {Pseudomonas putida} SCOP: c.1.10.1 | Back alignment and structure |
|---|
Probab=97.59 E-value=0.00022 Score=64.77 Aligned_cols=84 Identities=14% Similarity=0.101 Sum_probs=63.9
Q ss_pred HHHhhcCCCEEEEecCCHHHHHHHHHcCCcEEEEcCCCCCCCCCccc-hHHHHHHHHHHhcCCCcEEEecCCCCHHHHHH
Q 017718 216 WLQTITKLPILVKGVLTAEDARIAVQAGAAGIIVSNHGARQLDYVPA-TIMALEEVVKATQGRIPVFLDGGVRRGTDVFK 294 (367)
Q Consensus 216 ~l~~~~~~Pv~vK~v~~~~~a~~~~~~G~d~i~vs~~gg~~~~~~~~-~~~~l~~i~~~~~~~~~via~GGI~~~~dv~k 294 (367)
..++..++|+++ ++.+++++..+.++|+|+|-+. . .... -.+.|.+++..++ ++|+++.||| +.+++..
T Consensus 113 ~~~~~~g~~~i~-G~~t~~e~~~A~~~Gad~vk~F--P-----a~~~~G~~~lk~i~~~~~-~ipvvaiGGI-~~~N~~~ 182 (225)
T 1mxs_A 113 EAGVDSEIPLLP-GISTPSEIMMGYALGYRRFKLF--P-----AEISGGVAAIKAFGGPFG-DIRFCPTGGV-NPANVRN 182 (225)
T ss_dssp HHHHHCSSCEEC-EECSHHHHHHHHTTTCCEEEET--T-----HHHHTHHHHHHHHHTTTT-TCEEEEBSSC-CTTTHHH
T ss_pred HHHHHhCCCEEE-eeCCHHHHHHHHHCCCCEEEEc--c-----CccccCHHHHHHHHhhCC-CCeEEEECCC-CHHHHHH
Confidence 444557888876 5899999999999999999983 2 1111 2456666665443 7999999999 5678999
Q ss_pred HHH-cCCCEEEechHHH
Q 017718 295 ALA-LGASGIFIGRPVV 310 (367)
Q Consensus 295 al~-lGAd~V~ig~~~l 310 (367)
.+. .||++|. |+.++
T Consensus 183 ~l~~~Ga~~v~-gSai~ 198 (225)
T 1mxs_A 183 YMALPNVMCVG-TTWML 198 (225)
T ss_dssp HHHSTTBCCEE-ECTTS
T ss_pred HHhccCCEEEE-Echhc
Confidence 999 6999999 88665
|
| >1tqj_A Ribulose-phosphate 3-epimerase; beta-alpha barrel epimerase, isomerase; 1.60A {Synechocystis SP} SCOP: c.1.2.2 | Back alignment and structure |
|---|
Probab=97.58 E-value=0.00034 Score=63.63 Aligned_cols=167 Identities=15% Similarity=0.150 Sum_probs=97.3
Q ss_pred HHHHHHHHcCCcee-ecCCC-----C--CC---HHHHHhhCCCceEEEEeecCCHHHHHHHHHHHHHcCCcEEEEecC--
Q 017718 92 ATARAASAAGTIMT-LSSWS-----T--SS---VEEVASTGPGIRFFQLYVYKDRNVVAQLVRRAERAGFKAIALTVD-- 158 (367)
Q Consensus 92 ~~a~aa~~~G~~~~-vs~~~-----~--~~---~e~i~~~~~~~~~~QLy~~~d~~~~~~~l~ra~~~G~~ai~itvd-- 158 (367)
...+.+.+.|+.+. +..+. + .. .+++++....+.-..|.. .|++. .++.+.++|++.+.++..
T Consensus 21 ~~i~~~~~~Gad~ihldi~DG~fvp~~~~g~~~v~~lr~~~~~~~~vhlmv-~dp~~---~i~~~~~aGadgv~vh~e~~ 96 (230)
T 1tqj_A 21 EEIKAVDEAGADWIHVDVMDGRFVPNITIGPLIVDAIRPLTKKTLDVHLMI-VEPEK---YVEDFAKAGADIISVHVEHN 96 (230)
T ss_dssp HHHHHHHHTTCSEEEEEEEBSSSSSCBCBCHHHHHHHGGGCCSEEEEEEES-SSGGG---THHHHHHHTCSEEEEECSTT
T ss_pred HHHHHHHHcCCCEEEEEEEecCCCcchhhhHHHHHHHHhhcCCcEEEEEEc-cCHHH---HHHHHHHcCCCEEEECcccc
Confidence 56677778887653 32221 1 12 233443332355555664 56643 567888899999988754
Q ss_pred CCCCCchhHHhhhhcCCCCccccccccccccCccccccchhhHHHhhhccCccccHHHHHhhcCCCEEEEec-CCHHHHH
Q 017718 159 TPRLGRREADIKNRFTLPPFLTLKNFQGLDLGKMDEANDSGLAAYVAGQIDRSLSWKWLQTITKLPILVKGV-LTAEDAR 237 (367)
Q Consensus 159 ~p~~g~r~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~l~~~~~~Pv~vK~v-~~~~~a~ 237 (367)
.+-. ..+ ..+.+++ .++.+.+-.. .++.+..
T Consensus 97 ~~~~-------------------------------------~~~----------~~~~i~~-~g~~~gv~~~p~t~~e~~ 128 (230)
T 1tqj_A 97 ASPH-------------------------------------LHR----------TLCQIRE-LGKKAGAVLNPSTPLDFL 128 (230)
T ss_dssp TCTT-------------------------------------HHH----------HHHHHHH-TTCEEEEEECTTCCGGGG
T ss_pred cchh-------------------------------------HHH----------HHHHHHH-cCCcEEEEEeCCCcHHHH
Confidence 2100 000 1113333 3444444332 2333334
Q ss_pred HHHHcCCcEEEEcC-CCCCC-CCCccchHHHHHHHHHHhc---CCCcEEEecCCCCHHHHHHHHHcCCCEEEechHHHH
Q 017718 238 IAVQAGAAGIIVSN-HGARQ-LDYVPATIMALEEVVKATQ---GRIPVFLDGGVRRGTDVFKALALGASGIFIGRPVVY 311 (367)
Q Consensus 238 ~~~~~G~d~i~vs~-~gg~~-~~~~~~~~~~l~~i~~~~~---~~~~via~GGI~~~~dv~kal~lGAd~V~ig~~~l~ 311 (367)
.....++|+|.+.. ++|.. ....+...+.|.++++... .++||.++|||.. +++.++..+|||.+.+||+++.
T Consensus 129 ~~~~~~~D~v~~msv~pg~ggq~~~~~~~~~i~~lr~~~~~~~~~~~I~v~GGI~~-~~~~~~~~aGad~vvvGSai~~ 206 (230)
T 1tqj_A 129 EYVLPVCDLILIMSVNPGFGGQSFIPEVLPKIRALRQMCDERGLDPWIEVDGGLKP-NNTWQVLEAGANAIVAGSAVFN 206 (230)
T ss_dssp TTTGGGCSEEEEESSCC----CCCCGGGHHHHHHHHHHHHHHTCCCEEEEESSCCT-TTTHHHHHHTCCEEEESHHHHT
T ss_pred HHHHhcCCEEEEEEeccccCCccCcHHHHHHHHHHHHHHHhcCCCCcEEEECCcCH-HHHHHHHHcCCCEEEECHHHHC
Confidence 44445899886532 33321 2234556777777776552 2699999999998 8899999999999999998763
|
| >3vzx_A Heptaprenylglyceryl phosphate synthase; biosynthesis, prenyltransferases, enzyme catalysis, transfer; 1.54A {Bacillus subtilis} PDB: 3vzy_A* 3vzz_A* 3w00_A* 1viz_A | Back alignment and structure |
|---|
Probab=97.58 E-value=0.00048 Score=62.62 Aligned_cols=81 Identities=14% Similarity=0.159 Sum_probs=59.0
Q ss_pred HHHHHHcCCcEEEEcCCCCCCCCCccchHHHHHHHHHHhcCCCcEEEecCCCCHHHHHHHHHcCCCEEEechHHHHHhhc
Q 017718 236 ARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFIGRPVVYSLAA 315 (367)
Q Consensus 236 a~~~~~~G~d~i~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~~~via~GGI~~~~dv~kal~lGAd~V~ig~~~l~~l~~ 315 (367)
|..+.-.|...|.+.. .|.. ...+.+.++++.+. ++||++-|||++++++.+++ .|||.|.+|+++..
T Consensus 146 a~~a~~~g~~~VYld~-sG~~-----~~~~~i~~i~~~~~-~~Pv~vGGGI~t~e~a~~~~-~gAD~VVVGSa~v~---- 213 (228)
T 3vzx_A 146 ARVSELLQLPIFYLEY-SGVL-----GDIEAVKKTKAVLE-TSTLFYGGGIKDAETAKQYA-EHADVIVVGNAVYE---- 213 (228)
T ss_dssp HHHHHHTTCSEEEEEC-TTSC-----CCHHHHHHHHHHCS-SSEEEEESSCCSHHHHHHHH-TTCSEEEECTHHHH----
T ss_pred HHHHHHcCCCEEEecC-CCCc-----CCHHHHHHHHHhcC-CCCEEEeCCCCCHHHHHHHH-hCCCEEEEChHHhc----
Confidence 3444456788888876 3321 25788888887652 58999999999999999987 79999999998875
Q ss_pred cChHHHHHHHHHHH
Q 017718 316 EGEKGVRRVLEMLR 329 (367)
Q Consensus 316 ~G~~~v~~~i~~l~ 329 (367)
.++-+.++++.++
T Consensus 214 -~p~~~~~~v~a~~ 226 (228)
T 3vzx_A 214 -DFDRALKTVAAVK 226 (228)
T ss_dssp -CHHHHHHHHHHHH
T ss_pred -CHHHHHHHHHHHh
Confidence 3444444444443
|
| >1ypf_A GMP reductase; GUAC, purines, pyrimidines, nucleosides, nucleotides, nucleo nucleoside interconversions, spine, structural genomics; 1.80A {Bacillus anthracis} PDB: 2a1y_A* | Back alignment and structure |
|---|
Probab=97.57 E-value=0.00019 Score=69.08 Aligned_cols=131 Identities=15% Similarity=0.100 Sum_probs=87.8
Q ss_pred cCCceeecCCCCCCHHHHHhhCCCceEEEEeecCCHHHHHHHHHHHHHcCCcEEEEecCCCCCCchhHHhhhhcCCCCcc
Q 017718 100 AGTIMTLSSWSTSSVEEVASTGPGIRFFQLYVYKDRNVVAQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFTLPPFL 179 (367)
Q Consensus 100 ~G~~~~vs~~~~~~~e~i~~~~~~~~~~QLy~~~d~~~~~~~l~ra~~~G~~ai~itvd~p~~g~r~~~~~~~~~~p~~~ 179 (367)
...|+++++|+..+.++++....+..|+|+|...+++.+.++++++++.|+. +++|. |.++
T Consensus 45 l~~Pi~~a~mag~s~~~la~a~~~~gg~g~~~~~~~~~~~~~i~~~~~~g~~---v~v~~---g~~~------------- 105 (336)
T 1ypf_A 45 FKLPVVPANMQTIIDERIATYLAENNYFYIMHRFQPEKRISFIRDMQSRGLI---ASISV---GVKE------------- 105 (336)
T ss_dssp ESSSEEECSSTTTCCHHHHHHHHHTTCCCCCCCSSGGGHHHHHHHHHHTTCC---CEEEE---CCSH-------------
T ss_pred ecCcEEECCCCCCChHHHHHHHHhCCCEEEecCCCCHHHHHHHHHHHhcCCe---EEEeC---CCCH-------------
Confidence 3467889999888888886532245789999888888888888888776531 11110 0000
Q ss_pred ccccccccccCccccccchhhHHHhhhccCccccHHHHHhhcCCCEEEEecCCHHHHHHHHHcC--CcEEEEcCCCCCCC
Q 017718 180 TLKNFQGLDLGKMDEANDSGLAAYVAGQIDRSLSWKWLQTITKLPILVKGVLTAEDARIAVQAG--AAGIIVSNHGARQL 257 (367)
Q Consensus 180 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~l~~~~~~Pv~vK~v~~~~~a~~~~~~G--~d~i~vs~~gg~~~ 257 (367)
+. .+.++.+.++| ++.|.+....|
T Consensus 106 -----------------------------------~~----------------~~~a~~~~~~g~~~~~i~i~~~~G--- 131 (336)
T 1ypf_A 106 -----------------------------------DE----------------YEFVQQLAAEHLTPEYITIDIAHG--- 131 (336)
T ss_dssp -----------------------------------HH----------------HHHHHHHHHTTCCCSEEEEECSSC---
T ss_pred -----------------------------------HH----------------HHHHHHHHhcCCCCCEEEEECCCC---
Confidence 00 02356677888 88887632111
Q ss_pred CCccchHHHHHHHHHHhcCCCcEEEecCCCCHHHHHHHHHcCCCEEEec
Q 017718 258 DYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFIG 306 (367)
Q Consensus 258 ~~~~~~~~~l~~i~~~~~~~~~via~GGI~~~~dv~kal~lGAd~V~ig 306 (367)
.....++.+.++++.. ..+++..|.|.+.+++.++..+|||+|.++
T Consensus 132 -~~~~~~~~i~~lr~~~--~~~~vi~G~v~s~e~A~~a~~aGad~Ivvs 177 (336)
T 1ypf_A 132 -HSNAVINMIQHIKKHL--PESFVIAGNVGTPEAVRELENAGADATKVG 177 (336)
T ss_dssp -CSHHHHHHHHHHHHHC--TTSEEEEEEECSHHHHHHHHHHTCSEEEEC
T ss_pred -CcHHHHHHHHHHHHhC--CCCEEEECCcCCHHHHHHHHHcCCCEEEEe
Confidence 1234677888888776 334455577999999999999999999993
|
| >1n7k_A Deoxyribose-phosphate aldolase; A.pernix, tetramer, alpha-beta TIM barrel, riken S genomics/proteomics initiative, RSGI, structural genomics,; 2.00A {Aeropyrum pernix} SCOP: c.1.10.1 | Back alignment and structure |
|---|
Probab=97.57 E-value=0.0015 Score=59.61 Aligned_cols=65 Identities=25% Similarity=0.257 Sum_probs=47.8
Q ss_pred HHHHHHcCCcEEEEcCCCCCCCCC-ccchHHHHHH--HHHHhcCCCcEEEecCCCCHHHHHHHHHcCCCEEEec
Q 017718 236 ARIAVQAGAAGIIVSNHGARQLDY-VPATIMALEE--VVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFIG 306 (367)
Q Consensus 236 a~~~~~~G~d~i~vs~~gg~~~~~-~~~~~~~l~~--i~~~~~~~~~via~GGI~~~~dv~kal~lGAd~V~ig 306 (367)
++.+.++|+|+|-.|. | +.+ +..+.+.+.. +++.++ +||-++|||++.+|+++++.+||+-++..
T Consensus 154 ~ria~eaGADfVKTsT-G---~~~~~gAt~~dv~l~~m~~~v~--v~VKaaGGirt~~~al~~i~aGa~RiG~S 221 (234)
T 1n7k_A 154 VDSSRRAGADIVKTST-G---VYTKGGDPVTVFRLASLAKPLG--MGVKASGGIRSGIDAVLAVGAGADIIGTS 221 (234)
T ss_dssp HHHHHHTTCSEEESCC-S---SSCCCCSHHHHHHHHHHHGGGT--CEEEEESSCCSHHHHHHHHHTTCSEEEET
T ss_pred HHHHHHhCCCEEEeCC-C---CCCCCCCCHHHHHHHHHHHHHC--CCEEEecCCCCHHHHHHHHHcCccccchH
Confidence 6778999999999873 2 111 2345444444 555554 99999999999999999999999954433
|
| >3r8r_A Transaldolase; pentose phosphate pathway, schiff bases; 1.90A {Bacillus subtilis} | Back alignment and structure |
|---|
Probab=97.56 E-value=0.012 Score=52.84 Aligned_cols=181 Identities=17% Similarity=0.148 Sum_probs=117.6
Q ss_pred hhHHHHHHHHHcCCceeecCC------C-CCCHH----HHHhhCCCceEEEEeecCCHHHHHHHHHHHHHcCCcEEEEec
Q 017718 89 GEYATARAASAAGTIMTLSSW------S-TSSVE----EVASTGPGIRFFQLYVYKDRNVVAQLVRRAERAGFKAIALTV 157 (367)
Q Consensus 89 ~e~~~a~aa~~~G~~~~vs~~------~-~~~~e----~i~~~~~~~~~~QLy~~~d~~~~~~~l~ra~~~G~~ai~itv 157 (367)
.|+.-.+.+.+.|..-.++|. + ....+ +|++..+++..+|+. ..|.+.+.+..++..+.+ +.++|-+
T Consensus 8 An~~ei~~~~~~g~i~GVTTNPsli~k~~g~~~~~~~~eI~~~v~G~Vs~EV~-a~d~e~mi~ea~~l~~~~-~nv~IKI 85 (212)
T 3r8r_A 8 ANIDEIREANELGILAGVTTNPSLVAKEANVSFHDRLREITDVVKGSVSAEVI-SLKAEEMIEEGKELAKIA-PNITVKI 85 (212)
T ss_dssp CCHHHHHHHHHTTCEEEEECCHHHHHTSCSSCHHHHHHHHHHHCCSCEEEECC-CSSHHHHHHHHHHHHTTC-TTEEEEE
T ss_pred CCHHHHHHHHhcCCcccccCCHHHHHHccCCCHHHHHHHHHHhcCCCEEEEEe-cCCHHHHHHHHHHHHHhC-CCEEEEe
Confidence 477888889999988888765 2 23333 345555678888985 566665544444444443 2222211
Q ss_pred CCCCCCchhHHhhhhcCCCCccccccccccccCccccccchhhHHHhhhccCccccHH------HHHhhcCCCEEEEecC
Q 017718 158 DTPRLGRREADIKNRFTLPPFLTLKNFQGLDLGKMDEANDSGLAAYVAGQIDRSLSWK------WLQTITKLPILVKGVL 231 (367)
Q Consensus 158 d~p~~g~r~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~------~l~~~~~~Pv~vK~v~ 231 (367)
| .+|+ .|.+ -++++-+-.+.
T Consensus 86 ------------------P-----------------------------------~T~eGl~A~~~L~~-~GI~vn~Tlif 111 (212)
T 3r8r_A 86 ------------------P-----------------------------------MTSDGLKAVRALTD-LGIKTNVTLIF 111 (212)
T ss_dssp ------------------E-----------------------------------SSHHHHHHHHHHHH-TTCCEEEEEEC
T ss_pred ------------------C-----------------------------------CCHHHHHHHHHHHH-CCCcEEEEEeC
Confidence 1 0222 3332 48999999999
Q ss_pred CHHHHHHHHHcCCcEEEEcCCCCCCCCCccchHHHHHHHHHHh---cCCCcEEEecCCCCHHHHHHHHHcCCCEEEechH
Q 017718 232 TAEDARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKAT---QGRIPVFLDGGVRRGTDVFKALALGASGIFIGRP 308 (367)
Q Consensus 232 ~~~~a~~~~~~G~d~i~vs~~gg~~~~~~~~~~~~l~~i~~~~---~~~~~via~GGI~~~~dv~kal~lGAd~V~ig~~ 308 (367)
+...|..|.++|+++|.. .=||-.|++.+....+.++.+.. +.+..|++.+ +|+..++.++..+|||.+-+.-.
T Consensus 112 S~~Qa~~Aa~AGa~yISP--fvgRi~d~~~dG~~~v~~i~~~~~~~~~~t~ilaAS-~R~~~~v~~~a~~G~d~~Tip~~ 188 (212)
T 3r8r_A 112 NANQALLAARAGATYVSP--FLGRLDDIGHNGLDLISEVKQIFDIHGLDTQIIAAS-IRHPQHVTEAALRGAHIGTMPLK 188 (212)
T ss_dssp SHHHHHHHHHHTCSEEEE--BHHHHHHTTSCHHHHHHHHHHHHHHHTCCCEEEEBS-CCSHHHHHHHHHTTCSEEEECHH
T ss_pred CHHHHHHHHHcCCeEEEe--ccchhhhcCCChHHHHHHHHHHHHHcCCCCEEEEec-CCCHHHHHHHHHcCCCEEEcCHH
Confidence 999999999999998876 23443344555556665555443 3356666655 99999999999999999999988
Q ss_pred HHHHhhccC--hHHHHHHHHHH
Q 017718 309 VVYSLAAEG--EKGVRRVLEML 328 (367)
Q Consensus 309 ~l~~l~~~G--~~~v~~~i~~l 328 (367)
++..+..+- ..|++.+.+.|
T Consensus 189 vl~~l~~hpltd~~~~~F~~Dw 210 (212)
T 3r8r_A 189 VIHALTKHPLTDKGIEQFLADW 210 (212)
T ss_dssp HHHHHTCCHHHHHHHHHHHHHH
T ss_pred HHHHHHcCCcHHHHHHHHHHHh
Confidence 887665322 23455554443
|
| >3ceu_A Thiamine phosphate pyrophosphorylase; TIM barrel-like protein, structural genomics, PSI-2, protein structure initiative; 2.30A {Bacteroides thetaiotaomicron vpi-5482} | Back alignment and structure |
|---|
Probab=97.56 E-value=0.00014 Score=65.17 Aligned_cols=82 Identities=16% Similarity=0.091 Sum_probs=59.5
Q ss_pred EecCCHHHHHHHHHcCCcEEEEcCCCCCC-C-C-CccchHHHHHHHHHHhcCCCcEEEecCCCCHHHHHHHHHcCCCEEE
Q 017718 228 KGVLTAEDARIAVQAGAAGIIVSNHGARQ-L-D-YVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIF 304 (367)
Q Consensus 228 K~v~~~~~a~~~~~~G~d~i~vs~~gg~~-~-~-~~~~~~~~l~~i~~~~~~~~~via~GGI~~~~dv~kal~lGAd~V~ 304 (367)
-.+.+.+++..+. .|+|+|.++.--.+. . + +.+..++.+.++.+.+..++||++.|||. ++++.+++.+||++|.
T Consensus 93 ~s~~t~~e~~~A~-~GaDyv~~g~vf~t~sk~~~~~~~g~~~l~~~~~~~~~~iPviaiGGI~-~~nv~~~~~~Ga~gVa 170 (210)
T 3ceu_A 93 CSCHSVEEVKNRK-HFYDYVFMSPIYDSISKVNYYSTYTAEELREAQKAKIIDSKVMALGGIN-EDNLLEIKDFGFGGAV 170 (210)
T ss_dssp EEECSHHHHHTTG-GGSSEEEECCCC---------CCCCHHHHHHHHHTTCSSTTEEEESSCC-TTTHHHHHHTTCSEEE
T ss_pred EecCCHHHHHHHh-hCCCEEEECCcCCCCCCCCCCCCCCHHHHHHHHHhcCCCCCEEEECCCC-HHHHHHHHHhCCCEEE
Confidence 3457889998888 999999985411110 1 1 12335677777765421279999999998 8999999999999999
Q ss_pred echHHHH
Q 017718 305 IGRPVVY 311 (367)
Q Consensus 305 ig~~~l~ 311 (367)
+++.+.-
T Consensus 171 v~s~i~~ 177 (210)
T 3ceu_A 171 VLGDLWN 177 (210)
T ss_dssp ESHHHHT
T ss_pred EhHHhHc
Confidence 9998863
|
| >2b7n_A Probable nicotinate-nucleotide pyrophosphorylase; quinolinate phosphoribosyltransferase, quinolinic acid, HELI pylori, transferase; HET: NTM; 2.30A {Helicobacter pylori} PDB: 2b7p_A* 2b7q_A* | Back alignment and structure |
|---|
Probab=97.51 E-value=0.00023 Score=66.62 Aligned_cols=85 Identities=15% Similarity=0.157 Sum_probs=64.7
Q ss_pred HHHHHhhcC--CCEEEEecCCHHHHHHHHHcCCcEEEEcCCCCCCCCCccchHHHHHHHHHHhc---CCCcEEEecCCCC
Q 017718 214 WKWLQTITK--LPILVKGVLTAEDARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQ---GRIPVFLDGGVRR 288 (367)
Q Consensus 214 ~~~l~~~~~--~Pv~vK~v~~~~~a~~~~~~G~d~i~vs~~gg~~~~~~~~~~~~l~~i~~~~~---~~~~via~GGI~~ 288 (367)
++.+|+..+ +++.+ .+.+.++++.+.++|+|+|.+++- + .+.+.++++.++ .+++|.++||| +
T Consensus 172 i~~~r~~~~~~~~i~v-ev~tlee~~~A~~aGaD~I~ld~~-------~---~~~l~~~v~~l~~~~~~~~i~AsGGI-~ 239 (273)
T 2b7n_A 172 LTHARKNLPFTAKIEI-ECESFEEAKNAMNAGADIVMCDNL-------S---VLETKEIAAYRDAHYPFVLLEASGNI-S 239 (273)
T ss_dssp HHHHGGGSCTTCCEEE-EESSHHHHHHHHHHTCSEEEEETC-------C---HHHHHHHHHHHHHHCTTCEEEEESSC-C
T ss_pred HHHHHHhCCCCceEEE-EcCCHHHHHHHHHcCCCEEEECCC-------C---HHHHHHHHHHhhccCCCcEEEEECCC-C
Confidence 446666654 45665 677889999999999999999761 1 344555444442 24999999999 8
Q ss_pred HHHHHHHHHcCCCEEEechHHH
Q 017718 289 GTDVFKALALGASGIFIGRPVV 310 (367)
Q Consensus 289 ~~dv~kal~lGAd~V~ig~~~l 310 (367)
.+.+.+.+..|||.+.+|+.+.
T Consensus 240 ~~ni~~~~~aGaD~i~vGs~i~ 261 (273)
T 2b7n_A 240 LESINAYAKSGVDAISVGALIH 261 (273)
T ss_dssp TTTHHHHHTTTCSEEECTHHHH
T ss_pred HHHHHHHHHcCCcEEEEcHHhc
Confidence 9999999999999999999743
|
| >2a4a_A Deoxyribose-phosphate aldolase; lyase, TIM beta/alpha barrel, DEOC, DERA, structur genomics, structural genomics consortium, SGC; 1.84A {Plasmodium yoelii yoelii} SCOP: c.1.10.1 | Back alignment and structure |
|---|
Probab=97.50 E-value=0.00093 Score=62.49 Aligned_cols=86 Identities=15% Similarity=0.232 Sum_probs=56.1
Q ss_pred HHHHHhhcCCCEEEEecC------CHH----HHHHHHHcCCcEEEEcCCCCCCCCCccchHHHHHHHHHHh-------cC
Q 017718 214 WKWLQTITKLPILVKGVL------TAE----DARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKAT-------QG 276 (367)
Q Consensus 214 ~~~l~~~~~~Pv~vK~v~------~~~----~a~~~~~~G~d~i~vs~~gg~~~~~~~~~~~~l~~i~~~~-------~~ 276 (367)
+..+++..+ +..+|.+. +.+ .++.+.++|+|+|-.|. |-......+.....+.++.+.. +.
T Consensus 147 I~~v~~a~~-~~~lKVIlEt~~L~d~e~i~~A~~ia~eaGADfVKTST-Gf~~~gAT~edv~lm~~~v~~~~~~~~~tg~ 224 (281)
T 2a4a_A 147 TQSVKKLLT-NKILKVIIEVGELKTEDLIIKTTLAVLNGNADFIKTST-GKVQINATPSSVEYIIKAIKEYIKNNPEKNN 224 (281)
T ss_dssp HHHHHTTCT-TSEEEEECCHHHHCSHHHHHHHHHHHHTTTCSEEECCC-SCSSCCCCHHHHHHHHHHHHHHHHHCGGGTT
T ss_pred HHHHHHHhc-CCceEEEEecccCCcHHHHHHHHHHHHHhCCCEEEeCC-CCCCCCCCHHHHHHHHHHHHHhhcccccCCC
Confidence 335666553 35677762 333 25778999999999873 2111111123344444443322 56
Q ss_pred CCcEEEecCCCCHHHHHHHHHcCCC
Q 017718 277 RIPVFLDGGVRRGTDVFKALALGAS 301 (367)
Q Consensus 277 ~~~via~GGI~~~~dv~kal~lGAd 301 (367)
+++|-++|||++.+|+++++.+||+
T Consensus 225 ~vgVKaaGGIrt~e~al~~i~aga~ 249 (281)
T 2a4a_A 225 KIGLKVSGGISDLNTASHYILLARR 249 (281)
T ss_dssp CCEEEEESSCCSHHHHHHHHHHHHH
T ss_pred CceEEEeCCCCCHHHHHHHHHHhhh
Confidence 8999999999999999999999987
|
| >1x1o_A Nicotinate-nucleotide pyrophosphorylase; transferase, structural genomics, NPPSFA, national project O structural and functional analyses; 1.90A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=97.49 E-value=0.00075 Score=63.43 Aligned_cols=84 Identities=25% Similarity=0.313 Sum_probs=65.4
Q ss_pred HHHHHhhcC--CCEEEEecCCHHHHHHHHHcCCcEEEEcCCCCCCCCCccchHHHHHHHHHHhcCCCcEEEecCCCCHHH
Q 017718 214 WKWLQTITK--LPILVKGVLTAEDARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTD 291 (367)
Q Consensus 214 ~~~l~~~~~--~Pv~vK~v~~~~~a~~~~~~G~d~i~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~~~via~GGI~~~~d 291 (367)
++.+|+..+ .+|.+ .+.+.++++.+.++|+|+|.+.|- ..+.++++++.+++++|+.++||| +.+.
T Consensus 186 v~~ar~~~~~~~~IgV-ev~t~eea~eA~~aGaD~I~ld~~----------~~~~~k~av~~v~~~ipi~AsGGI-t~en 253 (286)
T 1x1o_A 186 VRRAKARAPHYLKVEV-EVRSLEELEEALEAGADLILLDNF----------PLEALREAVRRVGGRVPLEASGNM-TLER 253 (286)
T ss_dssp HHHHHHHSCTTSCEEE-EESSHHHHHHHHHHTCSEEEEESC----------CHHHHHHHHHHHTTSSCEEEESSC-CHHH
T ss_pred HHHHHHhCCCCCEEEE-EeCCHHHHHHHHHcCCCEEEECCC----------CHHHHHHHHHHhCCCCeEEEEcCC-CHHH
Confidence 446666653 45655 667899999999999999999761 234455666666557999999999 4899
Q ss_pred HHHHHHcCCCEEEechHH
Q 017718 292 VFKALALGASGIFIGRPV 309 (367)
Q Consensus 292 v~kal~lGAd~V~ig~~~ 309 (367)
+.+..+.|+|.+.+|+.+
T Consensus 254 i~~~a~tGvD~IsVgs~~ 271 (286)
T 1x1o_A 254 AKAAAEAGVDYVSVGALT 271 (286)
T ss_dssp HHHHHHHTCSEEECTHHH
T ss_pred HHHHHHcCCCEEEEcHHH
Confidence 999999999999998854
|
| >3cwo_X Beta/alpha-barrel protein based on 1THF and 1TMY; XRAY, CHEY, HISF, half barrel, de novo protein; 3.10A {Thermotoga maritima} PDB: 2lle_A | Back alignment and structure |
|---|
Probab=97.46 E-value=0.00042 Score=61.61 Aligned_cols=76 Identities=14% Similarity=0.171 Sum_probs=56.8
Q ss_pred HHHHHHHHHcCCcEEEEcCCCCCCCCCccchHHHHHHHHHHhcCCCcEEEecCCCCHHHHHHHHHcCCCEEEechHHHH
Q 017718 233 AEDARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFIGRPVVY 311 (367)
Q Consensus 233 ~~~a~~~~~~G~d~i~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~~~via~GGI~~~~dv~kal~lGAd~V~ig~~~l~ 311 (367)
.+.++.+...|+..+.+.+-+......+.. ++.+.++.+.. ++|+|+.||+.+++|+.+++..|||+|++|++++.
T Consensus 133 ~~~i~~~~~~~~~~vli~~~~~~g~~~g~~-~~~i~~~~~~~--~~Pvia~~g~~~~~~~~~~~~~G~~~~~vg~a~~~ 208 (237)
T 3cwo_X 133 RDWVVEVEKRGAGEILLTSIDRDGTKSGYD-TEMIRFVRPLT--TLPIIASGGAGKMEHFLEAFLAGADAALAASVFHF 208 (237)
T ss_dssp HHHHHHHHHHTCSEEEEEETTTTTCCSCCC-HHHHHHHGGGC--CSCEEEESCCCSHHHHHHHHHHTCSEEEESHHHHT
T ss_pred HHHHHHHhhcCCCeEEEEecCCCCcccccc-HHHHHHHHHhc--CCCEEecCCCCCHHHHHHHHHcCcHHHhhhHHHHc
Confidence 355678888888877764321111112333 67777776544 79999999999999999999999999999999874
|
| >1p1x_A Deoxyribose-phosphate aldolase; alpha-beta barrel, TIM barrel, lyase; 0.99A {Escherichia coli} SCOP: c.1.10.1 PDB: 1jcl_A 1jcj_A* 1ktn_A 3npv_B 3npu_A 3npw_A 3nq2_A 3npx_A 3nq8_A 3q2d_A* 3nr0_A 3nqv_A | Back alignment and structure |
|---|
Probab=97.44 E-value=0.00089 Score=62.04 Aligned_cols=83 Identities=25% Similarity=0.269 Sum_probs=54.7
Q ss_pred HHHHhhcC-CCEEEEecC------CHH----HHHHHHHcCCcEEEEcCCCCCCCCCccchHHHHHHHHHH-----hcCCC
Q 017718 215 KWLQTITK-LPILVKGVL------TAE----DARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKA-----TQGRI 278 (367)
Q Consensus 215 ~~l~~~~~-~Pv~vK~v~------~~~----~a~~~~~~G~d~i~vs~~gg~~~~~~~~~~~~l~~i~~~-----~~~~~ 278 (367)
..+++..+ -+..+|.+. +.+ .++.+.++|+|+|-.|. | +..+..+.+.+..+++. ++.++
T Consensus 124 ~~v~~a~~~~g~~lKvIlEt~~L~d~e~i~~a~~ia~eaGADfVKTST-G---f~~~gAt~e~v~lm~~~I~~~~~g~~v 199 (260)
T 1p1x_A 124 KACKEACAAANVLLKVIIETGELKDEALIRKASEISIKAGADFIKTST-G---KVAVNATPESARIMMEVIRDMGVEKTV 199 (260)
T ss_dssp HHHHHHHHHTTCEEEEECCHHHHCSHHHHHHHHHHHHHTTCSEEECCC-S---CSSCCCCHHHHHHHHHHHHHHTCTTTC
T ss_pred HHHHHHhcccCCeEEEEEecccCCcHHHHHHHHHHHHHhCCCEEEeCC-C---CCCCCCCHHHHHHHHHHHHHhcCCCCc
Confidence 35555432 134567762 333 35678999999999873 2 11222344433333333 45689
Q ss_pred cEEEecCCCCHHHHHHHHHcCCC
Q 017718 279 PVFLDGGVRRGTDVFKALALGAS 301 (367)
Q Consensus 279 ~via~GGI~~~~dv~kal~lGAd 301 (367)
+|-++|||++.+|+++++.+||+
T Consensus 200 ~VKaaGGIrt~~~al~~i~aga~ 222 (260)
T 1p1x_A 200 GFKPAGGVRTAEDAQKYLAIADE 222 (260)
T ss_dssp EEECBSSCCSHHHHHHHHHHHHH
T ss_pred eEEEeCCCCCHHHHHHHHHhhhh
Confidence 99999999999999999999886
|
| >3tqv_A Nicotinate-nucleotide pyrophosphorylase; glycosyltransferase, transferase; 2.62A {Francisella tularensis subsp} | Back alignment and structure |
|---|
Probab=97.34 E-value=0.00089 Score=62.79 Aligned_cols=84 Identities=14% Similarity=0.194 Sum_probs=66.4
Q ss_pred HHHHHhhc-CCCEEEEecCCHHHHHHHHHcCCcEEEEcCCCCCCCCCccchHHHHHHHHHHhcCCCcEEEecCCCCHHHH
Q 017718 214 WKWLQTIT-KLPILVKGVLTAEDARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDV 292 (367)
Q Consensus 214 ~~~l~~~~-~~Pv~vK~v~~~~~a~~~~~~G~d~i~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~~~via~GGI~~~~dv 292 (367)
|+.+|+.. ..|+.| .+-+.++++.+.++|+|.|.+.| .+.+.++++++.+++++++.++||| +.+.+
T Consensus 189 v~~ar~~~~~~~IeV-Ev~tl~ea~eAl~aGaD~I~LDn----------~~~~~l~~av~~~~~~v~ieaSGGI-t~~~i 256 (287)
T 3tqv_A 189 VTKAKKLDSNKVVEV-EVTNLDELNQAIAAKADIVMLDN----------FSGEDIDIAVSIARGKVALEVSGNI-DRNSI 256 (287)
T ss_dssp HHHHHHHCTTSCEEE-EESSHHHHHHHHHTTCSEEEEES----------CCHHHHHHHHHHHTTTCEEEEESSC-CTTTH
T ss_pred HHHHHhhCCCCcEEE-EeCCHHHHHHHHHcCCCEEEEcC----------CCHHHHHHHHHhhcCCceEEEECCC-CHHHH
Confidence 34555543 467766 77889999999999999999987 2335677777777678999999999 66788
Q ss_pred HHHHHcCCCEEEechHH
Q 017718 293 FKALALGASGIFIGRPV 309 (367)
Q Consensus 293 ~kal~lGAd~V~ig~~~ 309 (367)
.++...|+|.+.+|...
T Consensus 257 ~~~a~tGVD~IsvGalt 273 (287)
T 3tqv_A 257 VAIAKTGVDFISVGAIT 273 (287)
T ss_dssp HHHHTTTCSEEECSHHH
T ss_pred HHHHHcCCCEEEEChhh
Confidence 88888999999999754
|
| >2jbm_A Nicotinate-nucleotide pyrophosphorylase; NAD, enzyme, metabolism, transferase, polymorphism, glycosyltransferase, pyridine nucleotide biosynthesis; HET: SRT; 2.0A {Homo sapiens} PDB: 3lar_A | Back alignment and structure |
|---|
Probab=97.30 E-value=0.00043 Score=65.57 Aligned_cols=84 Identities=17% Similarity=0.141 Sum_probs=63.6
Q ss_pred HHHHHhhcC--CCEEEEecCCHHHHHHHHHcCCcEEEEcCCCCCCCCCccchHHHHHHHHHHhc---CCCcEEEecCCCC
Q 017718 214 WKWLQTITK--LPILVKGVLTAEDARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQ---GRIPVFLDGGVRR 288 (367)
Q Consensus 214 ~~~l~~~~~--~Pv~vK~v~~~~~a~~~~~~G~d~i~vs~~gg~~~~~~~~~~~~l~~i~~~~~---~~~~via~GGI~~ 288 (367)
++.+|+..+ .++++ .+.+.++++.+.++|+|+|-+++- + .+.+.++++.++ .+++|.++||| +
T Consensus 187 i~~~r~~~~~~~~i~v-ev~tlee~~~A~~aGaD~I~ld~~-------~---~~~l~~~v~~l~~~~~~~~I~ASGGI-t 254 (299)
T 2jbm_A 187 VRAARQAADFALKVEV-ECSSLQEAVQAAEAGADLVLLDNF-------K---PEELHPTATVLKAQFPSVAVEASGGI-T 254 (299)
T ss_dssp HHHHHHHHTTTSCEEE-EESSHHHHHHHHHTTCSEEEEESC-------C---HHHHHHHHHHHHHHCTTSEEEEESSC-C
T ss_pred HHHHHHhCCcCCeEEE-ecCCHHHHHHHHHcCCCEEEECCC-------C---HHHHHHHHHHhhccCCCeeEEEECCC-C
Confidence 345666553 46665 677889999999999999999761 1 344444444442 24999999999 8
Q ss_pred HHHHHHHHHcCCCEEEechHH
Q 017718 289 GTDVFKALALGASGIFIGRPV 309 (367)
Q Consensus 289 ~~dv~kal~lGAd~V~ig~~~ 309 (367)
.+.+.+....|||.+.+|+.+
T Consensus 255 ~~ni~~~~~aGaD~i~vGs~i 275 (299)
T 2jbm_A 255 LDNLPQFCGPHIDVISMGMLT 275 (299)
T ss_dssp TTTHHHHCCTTCCEEECTHHH
T ss_pred HHHHHHHHHCCCCEEEEChhh
Confidence 999999999999999999954
|
| >3kts_A Glycerol uptake operon antiterminator regulatory; structural genomics, PSI-2, protein structur initiative; HET: UNL; 2.75A {Listeria monocytogenes str} | Back alignment and structure |
|---|
Probab=97.29 E-value=0.00034 Score=61.85 Aligned_cols=143 Identities=14% Similarity=0.112 Sum_probs=92.1
Q ss_pred ceEEEEeecCCHHHHHHHHHHHHHcCCcEEEEecCCCCCCchhHHhhhhcCCCCccccccccccccCccccccchhhHHH
Q 017718 124 IRFFQLYVYKDRNVVAQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLTLKNFQGLDLGKMDEANDSGLAAY 203 (367)
Q Consensus 124 ~~~~QLy~~~d~~~~~~~l~ra~~~G~~ai~itvd~p~~g~r~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~ 203 (367)
..+|=|+ .+-..+.+.++++++.|- -+++++|... |+ +. .....++
T Consensus 31 ~~ifll~--g~i~~l~~~v~~lk~~~K-~v~Vh~Dli~----------Gl------s~---------------d~~ai~f 76 (192)
T 3kts_A 31 TYMVMLE--THVAQLKALVKYAQAGGK-KVLLHADLVN----------GL------KN---------------DDYAIDF 76 (192)
T ss_dssp CEEEECS--EETTTHHHHHHHHHHTTC-EEEEEGGGEE----------TC------CC---------------SHHHHHH
T ss_pred CEEEEec--CcHHHHHHHHHHHHHcCC-eEEEecCchh----------cc------CC---------------cHHHHHH
Confidence 3445444 355667888999999994 5666888432 11 10 0112234
Q ss_pred hhhccCccc--c--HH---HHHhhcCCCEEEEec----CCHH-HHHHHHHcCCcEEEEcCCCCCCCCCccchHHHHHHHH
Q 017718 204 VAGQIDRSL--S--WK---WLQTITKLPILVKGV----LTAE-DARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVV 271 (367)
Q Consensus 204 ~~~~~d~~~--~--~~---~l~~~~~~Pv~vK~v----~~~~-~a~~~~~~G~d~i~vs~~gg~~~~~~~~~~~~l~~i~ 271 (367)
+.....++. + -. ..| ..++..+-+.- .+.+ ..+.+.+...|++-+- .+ +. ...+.+++
T Consensus 77 L~~~~~pdGIIsTk~~~i~~Ak-~~gL~tIqR~FliDS~al~~~~~~i~~~~PD~iEiL-------PG-i~-p~iI~~i~ 146 (192)
T 3kts_A 77 LCTEICPDGIISTRGNAIMKAK-QHKMLAIQRLFMIDSSAYNKGVALIQKVQPDCIELL-------PG-II-PEQVQKMT 146 (192)
T ss_dssp HHHTTCCSEEEESCHHHHHHHH-HTTCEEEEEEECCSHHHHHHHHHHHHHHCCSEEEEE-------CT-TC-HHHHHHHH
T ss_pred HHhCCCCCEEEeCcHHHHHHHH-HCCCeEEEEEEEEEcchHHHHHHHHhhcCCCEEEEC-------Cc-hh-HHHHHHHH
Confidence 443223332 1 11 333 34665555543 2223 3566777788988763 12 22 26888888
Q ss_pred HHhcCCCcEEEecCCCCHHHHHHHHHcCCCEEEechHHHHH
Q 017718 272 KATQGRIPVFLDGGVRRGTDVFKALALGASGIFIGRPVVYS 312 (367)
Q Consensus 272 ~~~~~~~~via~GGI~~~~dv~kal~lGAd~V~ig~~~l~~ 312 (367)
+.+ ++|||+.|+|++.+|+.+++..||++|..++..+|.
T Consensus 147 ~~~--~~PiIaGGlI~~~edv~~al~aGA~aVsTs~~~LW~ 185 (192)
T 3kts_A 147 QKL--HIPVIAGGLIETSEQVNQVIASGAIAVTTSNKHLWE 185 (192)
T ss_dssp HHH--CCCEEEESSCCSHHHHHHHHTTTEEEEEECCGGGGT
T ss_pred Hhc--CCCEEEECCcCCHHHHHHHHHcCCeEEEeCCHHHhC
Confidence 877 899999999999999999999999999999999883
|
| >2qr6_A IMP dehydrogenase/GMP reductase; NP_599840.1, G reductase domain, structural genomics, joint center for STR genomics, JCSG; HET: MSE; 1.50A {Corynebacterium glutamicum atcc 13032} | Back alignment and structure |
|---|
Probab=97.25 E-value=0.00092 Score=65.53 Aligned_cols=88 Identities=23% Similarity=0.307 Sum_probs=62.6
Q ss_pred HHHhhcCCCEEEEecC--CHHHHHHHHHcCCcEEEEcCCCCCCCCCccc-hHHHHHHHHHHhcCCCcEEEecCCCCHHHH
Q 017718 216 WLQTITKLPILVKGVL--TAEDARIAVQAGAAGIIVSNHGARQLDYVPA-TIMALEEVVKATQGRIPVFLDGGVRRGTDV 292 (367)
Q Consensus 216 ~l~~~~~~Pv~vK~v~--~~~~a~~~~~~G~d~i~vs~~gg~~~~~~~~-~~~~l~~i~~~~~~~~~via~GGI~~~~dv 292 (367)
.+++. +.|++++... ..+.++.+.++|+|.+.+++....+...++. .++.+.++++.. ++||++ |||.+++|+
T Consensus 150 ~~~~~-g~~v~~~v~~~~~~e~a~~~~~agad~i~i~~~~~~~~~~~~~~~~~~i~~l~~~~--~~pvi~-ggi~t~e~a 225 (393)
T 2qr6_A 150 QVRDS-GEIVAVRVSPQNVREIAPIVIKAGADLLVIQGTLISAEHVNTGGEALNLKEFIGSL--DVPVIA-GGVNDYTTA 225 (393)
T ss_dssp HHHHT-TSCCEEEECTTTHHHHHHHHHHTTCSEEEEECSSCCSSCCCC-----CHHHHHHHC--SSCEEE-ECCCSHHHH
T ss_pred HHhhc-CCeEEEEeCCccHHHHHHHHHHCCCCEEEEeCCccccccCCCcccHHHHHHHHHhc--CCCEEE-CCcCCHHHH
Confidence 44443 7899888763 2455778889999999885422111122221 555577777776 799999 999999999
Q ss_pred HHHHHcCCCEEEech
Q 017718 293 FKALALGASGIFIGR 307 (367)
Q Consensus 293 ~kal~lGAd~V~ig~ 307 (367)
.+++.+|||+|.+|+
T Consensus 226 ~~~~~~Gad~i~vg~ 240 (393)
T 2qr6_A 226 LHMMRTGAVGIIVGG 240 (393)
T ss_dssp HHHHTTTCSEEEESC
T ss_pred HHHHHcCCCEEEECC
Confidence 999999999999986
|
| >2czd_A Orotidine 5'-phosphate decarboxylase; pyrimidine biosynthesis, orotidine 5'-phosphate decarboxylas (ompdecase), structural genomics; 1.60A {Pyrococcus horikoshii} SCOP: c.1.2.3 PDB: 2cz5_A 2cze_A* 2czf_A* | Back alignment and structure |
|---|
Probab=97.23 E-value=0.00081 Score=60.01 Aligned_cols=81 Identities=17% Similarity=0.217 Sum_probs=56.9
Q ss_pred HHHHHHHcCCcEEEEcCCCCCCCCCccchHHHHHHHHHHhcCCCcEEEecCCCC-HHHHHHHHHcCCCEEEechHHHHHh
Q 017718 235 DARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRR-GTDVFKALALGASGIFIGRPVVYSL 313 (367)
Q Consensus 235 ~a~~~~~~G~d~i~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~~~via~GGI~~-~~dv~kal~lGAd~V~ig~~~l~~l 313 (367)
-++.+.+.|+++++++.+ ..+.+.++++..+ .-+++++|||+. +.++.+++.+|||.+.+||+++.+
T Consensus 124 ~~~~a~~~G~~G~~~~~~----------~~~~i~~lr~~~~-~~~~iv~gGI~~~g~~~~~~~~aGad~vvvGr~I~~a- 191 (208)
T 2czd_A 124 FIEVANEIEPFGVIAPGT----------RPERIGYIRDRLK-EGIKILAPGIGAQGGKAKDAVKAGADYIIVGRAIYNA- 191 (208)
T ss_dssp HHHHHHHHCCSEEECCCS----------STHHHHHHHHHSC-TTCEEEECCCCSSTTHHHHHHHHTCSEEEECHHHHTS-
T ss_pred HHHHHHHhCCcEEEECCC----------ChHHHHHHHHhCC-CCeEEEECCCCCCCCCHHHHHHcCCCEEEEChHHhcC-
Confidence 367788999999988542 2234455666553 334779999986 558999999999999999998753
Q ss_pred hccChHHHHHHHHHHHHHH
Q 017718 314 AAEGEKGVRRVLEMLREEF 332 (367)
Q Consensus 314 ~~~G~~~v~~~i~~l~~el 332 (367)
.. ..+.++.+++++
T Consensus 192 --~d---p~~~~~~l~~~i 205 (208)
T 2czd_A 192 --PN---PREAAKAIYDEI 205 (208)
T ss_dssp --SS---HHHHHHHHHHHH
T ss_pred --CC---HHHHHHHHHHHH
Confidence 22 334556666554
|
| >2f6u_A GGGPS, (S)-3-O-geranylgeranylglyceryl phosphate synthase; non-canonical TIM-barrel, prenyltransferase, archaeal lipid synthesis, dimer; HET: CIT; 1.55A {Archaeoglobus fulgidus} SCOP: c.1.4.1 PDB: 2f6x_A* | Back alignment and structure |
|---|
Probab=97.22 E-value=0.00083 Score=61.32 Aligned_cols=72 Identities=19% Similarity=0.197 Sum_probs=58.0
Q ss_pred CHHHHHHHHHcCC-----cEEEEcCCCCCCCCCccchHHHHHHHHHHhcCCCcEEEecCCCCHHHHHHHHHcCCCEEEec
Q 017718 232 TAEDARIAVQAGA-----AGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFIG 306 (367)
Q Consensus 232 ~~~~a~~~~~~G~-----d~i~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~~~via~GGI~~~~dv~kal~lGAd~V~ig 306 (367)
+++.++...++|. ..|.+.. .|. ....+.+.++++... ++|+++-|||++++++.+++. |||.|.+|
T Consensus 147 ~~e~~~~~a~~g~~~l~~~~Vyl~~-~G~-----~~~~~~i~~i~~~~~-~~Pv~vGgGI~s~e~a~~~~~-gAd~VIVG 218 (234)
T 2f6u_A 147 DKELAASYALVGEKLFNLPIIYIEY-SGT-----YGNPELVAEVKKVLD-KARLFYGGGIDSREKAREMLR-YADTIIVG 218 (234)
T ss_dssp CHHHHHHHHHHHHHTTCCSEEEEEC-TTS-----CCCHHHHHHHHHHCS-SSEEEEESCCCSHHHHHHHHH-HSSEEEEC
T ss_pred CHHHHHHHHHhhhhhcCCCEEEEeC-CCC-----cchHHHHHHHHHhCC-CCCEEEEecCCCHHHHHHHHh-CCCEEEEC
Confidence 5677888878776 6777754 232 446788888887652 689999999999999999999 99999999
Q ss_pred hHHHH
Q 017718 307 RPVVY 311 (367)
Q Consensus 307 ~~~l~ 311 (367)
++++.
T Consensus 219 Sa~v~ 223 (234)
T 2f6u_A 219 NVIYE 223 (234)
T ss_dssp HHHHH
T ss_pred hHHHh
Confidence 98875
|
| >3exr_A RMPD (hexulose-6-phosphate synthase); beta barrel, lyase; 1.70A {Streptococcus mutans} SCOP: c.1.2.3 PDB: 3exs_A* 3ext_A | Back alignment and structure |
|---|
Probab=97.17 E-value=0.00032 Score=63.47 Aligned_cols=97 Identities=15% Similarity=0.113 Sum_probs=63.0
Q ss_pred CCHHHHHHHHHcCCcEEEEcCCCCCCCCCccchHHHHHHHHHHhcCCCcEEEecCCCCHHHHHHHHHcCCCEEEechHHH
Q 017718 231 LTAEDARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFIGRPVV 310 (367)
Q Consensus 231 ~~~~~a~~~~~~G~d~i~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~~~via~GGI~~~~dv~kal~lGAd~V~ig~~~l 310 (367)
++.+.++.+.+.|++.+++.-....+.++...+.+-+..+++..+.+++|.++||| +++++.++..+|||.+.+||++.
T Consensus 122 ~~~~~~~~~~~~~~~~~v~~~a~~~~~~Gvv~s~~e~~~ir~~~~~~~~i~v~gGI-~~~~~~~~~~aGad~~VvG~~I~ 200 (221)
T 3exr_A 122 WTYDQAQQWLDAGISQAIYHQSRDALLAGETWGEKDLNKVKKLIEMGFRVSVTGGL-SVDTLKLFEGVDVFTFIAGRGIT 200 (221)
T ss_dssp CCHHHHHHHHHTTCCEEEEECCHHHHHHTCCCCHHHHHHHHHHHHHTCEEEEESSC-CGGGGGGGTTCCCSEEEECHHHH
T ss_pred CCHHHHHHHHcCCHHHHHHHHHHhcCCCccccCHHHHHHHHHhhcCCceEEEECCC-CHHHHHHHHHCCCCEEEECchhh
Confidence 46788888888899988883211112223233344455555555447889999999 56678888889999999999865
Q ss_pred HHhhccChHHHHHHHHHHHHHHHH
Q 017718 311 YSLAAEGEKGVRRVLEMLREEFEL 334 (367)
Q Consensus 311 ~~l~~~G~~~v~~~i~~l~~el~~ 334 (367)
.+ ..+ ...++.++++++.
T Consensus 201 ~a---~dp---~~a~~~~~~~~~~ 218 (221)
T 3exr_A 201 EA---KNP---AGAARAFKDEIKR 218 (221)
T ss_dssp TS---SSH---HHHHHHHHHHHHH
T ss_pred CC---CCH---HHHHHHHHHHHHH
Confidence 32 122 2345666666554
|
| >1jcn_A Inosine monophosphate dehydrogenase I; IMPD, IMPDH, guanine nucleotide synthesis, oxidoreductase; HET: CPR; 2.50A {Homo sapiens} SCOP: c.1.5.1 d.37.1.1 PDB: 1jr1_A* 1nf7_A* 1b3o_A* 1nfb_A* | Back alignment and structure |
|---|
Probab=97.09 E-value=0.0064 Score=61.60 Aligned_cols=68 Identities=16% Similarity=0.236 Sum_probs=52.5
Q ss_pred HHHHHHHHHcCCcEEEEcCCCCCCCCCccchHHHHHHHHHHhcCCCcEEEecCCCCHHHHHHHHHcCCCEEEec
Q 017718 233 AEDARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFIG 306 (367)
Q Consensus 233 ~~~a~~~~~~G~d~i~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~~~via~GGI~~~~dv~kal~lGAd~V~ig 306 (367)
.+.++.+.++|+|+|.+..+.|.. ...++.+.++++.++ ++||++ |++.+.+++.++..+|||++.+|
T Consensus 257 ~~~a~~~~~aG~d~v~i~~~~G~~----~~~~~~i~~i~~~~~-~~pvi~-~~v~t~~~a~~l~~aGad~I~vg 324 (514)
T 1jcn_A 257 KYRLDLLTQAGVDVIVLDSSQGNS----VYQIAMVHYIKQKYP-HLQVIG-GNVVTAAQAKNLIDAGVDGLRVG 324 (514)
T ss_dssp HHHHHHHHHTTCSEEEECCSCCCS----HHHHHHHHHHHHHCT-TCEEEE-EEECSHHHHHHHHHHTCSEEEEC
T ss_pred HHHHHHHHHcCCCEEEeeccCCcc----hhHHHHHHHHHHhCC-CCceEe-cccchHHHHHHHHHcCCCEEEEC
Confidence 567889999999999994322211 234577888887763 688876 77999999999999999999773
|
| >1viz_A PCRB protein homolog; structural genomics, unknown function; 1.85A {Bacillus subtilis} SCOP: c.1.4.1 | Back alignment and structure |
|---|
Probab=97.07 E-value=0.0012 Score=60.61 Aligned_cols=72 Identities=14% Similarity=0.164 Sum_probs=55.9
Q ss_pred CHHHHHHHHHcCC----cEEEEcCCCCCCCCCccchHHHHHHHHHHhcCCCcEEEecCCCCHHHHHHHHHcCCCEEEech
Q 017718 232 TAEDARIAVQAGA----AGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFIGR 307 (367)
Q Consensus 232 ~~~~a~~~~~~G~----d~i~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~~~via~GGI~~~~dv~kal~lGAd~V~ig~ 307 (367)
+++.++...++|. -.|.+.. .|. ....+.+.++++.. .++||++-|||++++++.+++. |||+|.+|+
T Consensus 140 ~~~~~~~~a~~g~~~~~~~VYl~s-~G~-----~~~~~~i~~i~~~~-~~~Pv~vGgGI~t~e~a~~~~~-gAd~VIVGS 211 (240)
T 1viz_A 140 NMDDIVAYARVSELLQLPIFYLEY-SGV-----LGDIEAVKKTKAVL-ETSTLFYGGGIKDAETAKQYAE-HADVIVVGN 211 (240)
T ss_dssp CHHHHHHHHHHHHHTTCSEEEEEC-TTS-----CCCHHHHHHHHHTC-SSSEEEEESSCCSHHHHHHHHT-TCSEEEECT
T ss_pred CHHHHHHHHHhCcccCCCEEEEeC-CCc-----cChHHHHHHHHHhc-CCCCEEEEeccCCHHHHHHHHh-CCCEEEECh
Confidence 4677777777763 5666654 232 44678888887754 2689999999999999999888 999999999
Q ss_pred HHHH
Q 017718 308 PVVY 311 (367)
Q Consensus 308 ~~l~ 311 (367)
++..
T Consensus 212 a~v~ 215 (240)
T 1viz_A 212 AVYE 215 (240)
T ss_dssp HHHH
T ss_pred HHHh
Confidence 8875
|
| >3c2e_A Nicotinate-nucleotide pyrophosphorylase; qprtase, prtase, BNA6, mechanism, cytoplasm, glycosyltransferase, nucleus; 1.90A {Saccharomyces cerevisiae} PDB: 3c2f_A* 3c2o_A* 3c2v_A* 3c2r_A* | Back alignment and structure |
|---|
Probab=97.07 E-value=0.00048 Score=65.08 Aligned_cols=84 Identities=18% Similarity=0.151 Sum_probs=51.0
Q ss_pred HHHHHhhcC--CCEEEEecCCHHHHHHHHHcCCcEEEEcCCCCCCCCCccchHHHHHHHHHHhcCC------CcEEEecC
Q 017718 214 WKWLQTITK--LPILVKGVLTAEDARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGR------IPVFLDGG 285 (367)
Q Consensus 214 ~~~l~~~~~--~Pv~vK~v~~~~~a~~~~~~G~d~i~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~------~~via~GG 285 (367)
++.+++..+ +++++ .+.+.++++.+.++|+|+|-+++. ..+.+.++++.++++ ++|.++||
T Consensus 189 i~~~r~~~~~~~~i~v-ev~tlee~~~A~~aGaD~I~ld~~----------~~~~l~~~v~~l~~~~~g~~~v~I~ASGG 257 (294)
T 3c2e_A 189 VKNARAVCGFAVKIEV-ECLSEDEATEAIEAGADVIMLDNF----------KGDGLKMCAQSLKNKWNGKKHFLLECSGG 257 (294)
T ss_dssp HHHHHHHHCTTSCEEE-ECSSSHHHHHHHHHTCSEEECCC-------------------------------CCEEEEECC
T ss_pred HHHHHHhcCcCCeEEE-ecCCHHHHHHHHHcCCCEEEECCC----------CHHHHHHHHHHhcccccCCCCeEEEEECC
Confidence 345566554 46665 667778899999999999998762 123444444444333 99999999
Q ss_pred CCCHHHHHHHHHcCCCEEEechHH
Q 017718 286 VRRGTDVFKALALGASGIFIGRPV 309 (367)
Q Consensus 286 I~~~~dv~kal~lGAd~V~ig~~~ 309 (367)
| +.+.+.+....|+|.+.+|+.+
T Consensus 258 I-t~~ni~~~~~~GvD~i~vGs~i 280 (294)
T 3c2e_A 258 L-NLDNLEEYLCDDIDIYSTSSIH 280 (294)
T ss_dssp C-CC------CCCSCSEEECGGGT
T ss_pred C-CHHHHHHHHHcCCCEEEEechh
Confidence 9 8999999999999999999864
|
| >1tqx_A D-ribulose-5-phosphate 3-epimerase, putative; structural genomics, protein structure initiative, PSI; 2.00A {Plasmodium falciparum} SCOP: c.1.2.2 | Back alignment and structure |
|---|
Probab=97.06 E-value=0.0043 Score=56.30 Aligned_cols=109 Identities=12% Similarity=0.136 Sum_probs=72.2
Q ss_pred HHHhhcCCCEEEEec--CCHHHHHHHHHcC-CcEEEEcC-CCCC-CCCCccchHHHHHHHHHHhcCCCcEEEecCCCCHH
Q 017718 216 WLQTITKLPILVKGV--LTAEDARIAVQAG-AAGIIVSN-HGAR-QLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGT 290 (367)
Q Consensus 216 ~l~~~~~~Pv~vK~v--~~~~~a~~~~~~G-~d~i~vs~-~gg~-~~~~~~~~~~~l~~i~~~~~~~~~via~GGI~~~~ 290 (367)
.+|+ .++.+.+-.- ...+.++.+.+.| +|.|.+-. +.|. +....+..++.+.++++..+ +++|.++|||. .+
T Consensus 109 ~i~~-~G~k~gvalnp~tp~~~~~~~l~~g~~D~VlvmsV~pGf~gq~f~~~~l~ki~~lr~~~~-~~~I~VdGGI~-~~ 185 (227)
T 1tqx_A 109 EIRD-NNLWCGISIKPKTDVQKLVPILDTNLINTVLVMTVEPGFGGQSFMHDMMGKVSFLRKKYK-NLNIQVDGGLN-IE 185 (227)
T ss_dssp HHHT-TTCEEEEEECTTSCGGGGHHHHTTTCCSEEEEESSCTTCSSCCCCGGGHHHHHHHHHHCT-TCEEEEESSCC-HH
T ss_pred HHHH-cCCeEEEEeCCCCcHHHHHHHhhcCCcCEEEEeeeccCCCCcccchHHHHHHHHHHHhcc-CCeEEEECCCC-HH
Confidence 4443 4555555442 3345667777776 99996532 3222 23446678888888887664 78999999998 67
Q ss_pred HHHHHHHcCCCEEEechHHHHHhhccChHHHHHHHHHHHHHHH
Q 017718 291 DVFKALALGASGIFIGRPVVYSLAAEGEKGVRRVLEMLREEFE 333 (367)
Q Consensus 291 dv~kal~lGAd~V~ig~~~l~~l~~~G~~~v~~~i~~l~~el~ 333 (367)
.+.++..+|||.+.+||.++.+ .. ....++.+++.++
T Consensus 186 ti~~~~~aGAd~~V~GsaIf~~---~d---~~~~i~~l~~~~~ 222 (227)
T 1tqx_A 186 TTEISASHGANIIVAGTSIFNA---ED---PKYVIDTMRVSVQ 222 (227)
T ss_dssp HHHHHHHHTCCEEEESHHHHTC---SS---HHHHHHHHHHHHH
T ss_pred HHHHHHHcCCCEEEEeHHHhCC---CC---HHHHHHHHHHHHH
Confidence 8999999999999999986531 12 3345556655544
|
| >1vpx_A Protein (transaldolase (EC 2.2.1.2)); TM0295, structural genomics, JOI for structural genomics, JCSG; HET: GOL; 2.40A {Thermotoga maritima} SCOP: c.1.10.1 | Back alignment and structure |
|---|
Probab=97.06 E-value=0.043 Score=49.72 Aligned_cols=107 Identities=20% Similarity=0.198 Sum_probs=75.5
Q ss_pred cCCCEEEEecCCHHHHHHHHHcCCcEEEEcCCCCCCCCCccchHHHHHHHH---HHhcCCCcEEEecCCCCHHHHHHHHH
Q 017718 221 TKLPILVKGVLTAEDARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVV---KATQGRIPVFLDGGVRRGTDVFKALA 297 (367)
Q Consensus 221 ~~~Pv~vK~v~~~~~a~~~~~~G~d~i~vs~~gg~~~~~~~~~~~~l~~i~---~~~~~~~~via~GGI~~~~dv~kal~ 297 (367)
-++++-+-.+.+.+.|..+.++|+++|... =||-.+.+......+.+++ +..+-+..|++. +++++.++.++..
T Consensus 112 eGI~vNvTliFS~~QA~laa~AGa~~iSpF--VgRidd~g~dG~~~v~~i~~~~~~~~~~t~iL~A-S~r~~~~v~~~~l 188 (230)
T 1vpx_A 112 EGIKTNVTLVFSPAQAILAAKAGATYVSPF--VGRMDDLSNDGMRMLGEIVEIYNNYGFETEIIAA-SIRHPMHVVEAAL 188 (230)
T ss_dssp TTCCEEEEEECSHHHHHHHHHHTCSEEEEB--HHHHHHTTSCHHHHHHHHHHHHHHHTCSCEEEEB-SCCSHHHHHHHHH
T ss_pred CCCCEEEEEeCCHHHHHHHHhCCCeEEEec--cchhhhccccHHHHHHHHHHHHHHcCCCeEEEee-ccCCHHHHHHHHH
Confidence 389999999999999999999999988763 2332223333344444443 333335667776 4999999999999
Q ss_pred cCCCEEEechHHHHHhhccC--hHHHHHHHHHHHH
Q 017718 298 LGASGIFIGRPVVYSLAAEG--EKGVRRVLEMLRE 330 (367)
Q Consensus 298 lGAd~V~ig~~~l~~l~~~G--~~~v~~~i~~l~~ 330 (367)
+|||.+-+.-.++..+..++ .+|++.+.+.+.+
T Consensus 189 ~G~d~~Tip~~~l~~l~~h~lt~~gv~~F~~d~~~ 223 (230)
T 1vpx_A 189 MGVDIVTMPFAVLEKLFKHPMTDLGIERFMEDWKK 223 (230)
T ss_dssp HTCSEEEECHHHHHHHTCCHHHHHHHHHHHHHHHH
T ss_pred hCCCEEECCHHHHHHHHcCCCHHHHHHHHHHHHHH
Confidence 99999999988888776544 3566666655544
|
| >3l0g_A Nicotinate-nucleotide pyrophosphorylase; ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, ALS collaborative crystallography; 2.05A {Ehrlichia chaffeensis} | Back alignment and structure |
|---|
Probab=97.04 E-value=0.0023 Score=60.27 Aligned_cols=83 Identities=17% Similarity=0.153 Sum_probs=65.3
Q ss_pred HHHHHhhc-CCCEEEEecCCHHHHHHHHHcCCcEEEEcCCCCCCCCCccchHHHHHHHHHHhcCCCcEEEecCCCCHHHH
Q 017718 214 WKWLQTIT-KLPILVKGVLTAEDARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDV 292 (367)
Q Consensus 214 ~~~l~~~~-~~Pv~vK~v~~~~~a~~~~~~G~d~i~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~~~via~GGI~~~~dv 292 (367)
|+.+|+.. ..|+.| .+-+.++++.+.++|+|.|.+.| -+.+.++++++.+++++.+.++||| +.+.+
T Consensus 198 v~~ar~~~p~~kIeV-Ev~tl~e~~eAl~aGaDiImLDn----------~s~~~l~~av~~~~~~v~leaSGGI-t~~~i 265 (300)
T 3l0g_A 198 IQRLRKNLKNEYIAI-ECDNISQVEESLSNNVDMILLDN----------MSISEIKKAVDIVNGKSVLEVSGCV-NIRNV 265 (300)
T ss_dssp HHHHHHHSSSCCEEE-EESSHHHHHHHHHTTCSEEEEES----------CCHHHHHHHHHHHTTSSEEEEESSC-CTTTH
T ss_pred HHHHHHhCCCCCEEE-EECCHHHHHHHHHcCCCEEEECC----------CCHHHHHHHHHhhcCceEEEEECCC-CHHHH
Confidence 44556543 356655 67889999999999999999987 2336667777767678999999999 56778
Q ss_pred HHHHHcCCCEEEechH
Q 017718 293 FKALALGASGIFIGRP 308 (367)
Q Consensus 293 ~kal~lGAd~V~ig~~ 308 (367)
.++...|+|.+.+|..
T Consensus 266 ~~~A~tGVD~IsvGal 281 (300)
T 3l0g_A 266 RNIALTGVDYISIGCI 281 (300)
T ss_dssp HHHHTTTCSEEECGGG
T ss_pred HHHHHcCCCEEEeCcc
Confidence 8888899999999974
|
| >3gnn_A Nicotinate-nucleotide pyrophosphorylase; decode biostructures, ssgcid, niaid, SBRI, UWPPG, glycosyltransferase, transferase, structural genomics; 2.25A {Burkholderia pseudomallei} | Back alignment and structure |
|---|
Probab=97.00 E-value=0.0018 Score=60.95 Aligned_cols=82 Identities=26% Similarity=0.374 Sum_probs=62.5
Q ss_pred HHHHhhc-CCCEEEEecCCHHHHHHHHHcCCcEEEEcCCCCCCCCCccchHHHHHHHHHHhcCCCcEEEecCCCCHHHHH
Q 017718 215 KWLQTIT-KLPILVKGVLTAEDARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVF 293 (367)
Q Consensus 215 ~~l~~~~-~~Pv~vK~v~~~~~a~~~~~~G~d~i~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~~~via~GGI~~~~dv~ 293 (367)
+.+|+.. ..|+.| .+-+.++++.+.++|+|.|.+.| .+.+.++++++.+..++++.++||| +.+.+.
T Consensus 201 ~~~r~~~p~~~ieV-Evdtlde~~eAl~aGaD~I~LDn----------~~~~~l~~av~~i~~~v~ieaSGGI-~~~~i~ 268 (298)
T 3gnn_A 201 DAAFALNAEVPVQI-EVETLDQLRTALAHGARSVLLDN----------FTLDMMRDAVRVTEGRAVLEVSGGV-NFDTVR 268 (298)
T ss_dssp HHHHHHC--CCCEE-EESSHHHHHHHHHTTCEEEEEES----------CCHHHHHHHHHHHTTSEEEEEESSC-STTTHH
T ss_pred HHHHHhCCCCCEEE-EeCCHHHHHHHHHcCCCEEEECC----------CCHHHHHHHHHHhCCCCeEEEEcCC-CHHHHH
Confidence 3555544 245544 46888999999999999999987 2335566666666668999999999 567788
Q ss_pred HHHHcCCCEEEechH
Q 017718 294 KALALGASGIFIGRP 308 (367)
Q Consensus 294 kal~lGAd~V~ig~~ 308 (367)
+....|+|.+.+|+.
T Consensus 269 ~~a~tGVD~isvG~l 283 (298)
T 3gnn_A 269 AIAETGVDRISIGAL 283 (298)
T ss_dssp HHHHTTCSEEECGGG
T ss_pred HHHHcCCCEEEECCe
Confidence 888899999999983
|
| >1o4u_A Type II quinolic acid phosphoribosyltransferase; structural genomics, joint center for structural genomics, J protein structure initiative; 2.50A {Thermotoga maritima} SCOP: c.1.17.1 d.41.2.1 | Back alignment and structure |
|---|
Probab=97.00 E-value=0.00081 Score=63.16 Aligned_cols=84 Identities=23% Similarity=0.187 Sum_probs=63.7
Q ss_pred HHHHHhhcC--CCEEEEecCCHHHHHHHHHcCCcEEEEcCCCCCCCCCccchHHHHHHHHHHhcC---CCcEEEecCCCC
Q 017718 214 WKWLQTITK--LPILVKGVLTAEDARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQG---RIPVFLDGGVRR 288 (367)
Q Consensus 214 ~~~l~~~~~--~Pv~vK~v~~~~~a~~~~~~G~d~i~vs~~gg~~~~~~~~~~~~l~~i~~~~~~---~~~via~GGI~~ 288 (367)
++.+|+..+ .+|.+ .+.+.++++.+.++|+|+|.+.| -+.+.+.++++.+++ ++++.++||| +
T Consensus 183 v~~ar~~~~~~~~I~V-EV~tleea~eA~~aGaD~I~LDn----------~~~e~l~~av~~l~~~~~~v~ieASGGI-t 250 (285)
T 1o4u_A 183 VQEVRKIIPFTTKIEV-EVENLEDALRAVEAGADIVMLDN----------LSPEEVKDISRRIKDINPNVIVEVSGGI-T 250 (285)
T ss_dssp HHHHHTTSCTTSCEEE-EESSHHHHHHHHHTTCSEEEEES----------CCHHHHHHHHHHHHHHCTTSEEEEEECC-C
T ss_pred HHHHHHhCCCCceEEE-EeCCHHHHHHHHHcCCCEEEECC----------CCHHHHHHHHHHhhccCCCceEEEECCC-C
Confidence 446666552 56666 67789999999999999999987 123445555554433 7999999999 5
Q ss_pred HHHHHHHHHcCCCEEEechHH
Q 017718 289 GTDVFKALALGASGIFIGRPV 309 (367)
Q Consensus 289 ~~dv~kal~lGAd~V~ig~~~ 309 (367)
.+.+.++...|+|.+.+|+..
T Consensus 251 ~eni~~~a~tGVD~IsvGslt 271 (285)
T 1o4u_A 251 EENVSLYDFETVDVISSSRLT 271 (285)
T ss_dssp TTTGGGGCCTTCCEEEEGGGT
T ss_pred HHHHHHHHHcCCCEEEEeHHH
Confidence 688888888999999999843
|
| >3paj_A Nicotinate-nucleotide pyrophosphorylase, carboxyl; TIM barrel, pyridin dicarboxylate, 5-phospho-alpha-D-ribose 1-diphosphate; 2.00A {Vibrio cholerae o1 biovar el tor} | Back alignment and structure |
|---|
Probab=96.97 E-value=0.0043 Score=58.96 Aligned_cols=83 Identities=22% Similarity=0.256 Sum_probs=65.3
Q ss_pred HHHHHhhc-CCCEEEEecCCHHHHHHHHHcCCcEEEEcCCCCCCCCCccchHHHHHHHHHHhcCCCcEEEecCCCCHHHH
Q 017718 214 WKWLQTIT-KLPILVKGVLTAEDARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDV 292 (367)
Q Consensus 214 ~~~l~~~~-~~Pv~vK~v~~~~~a~~~~~~G~d~i~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~~~via~GGI~~~~dv 292 (367)
++..|+.. ..|+.| .+-+.++++.+.++|+|+|.+.| .+.+.++++++.++++++|.++|||. .+.+
T Consensus 222 v~~ar~~~p~~kIeV-EVdtldea~eAl~aGaD~I~LDn----------~~~~~l~~av~~l~~~v~ieaSGGIt-~~~I 289 (320)
T 3paj_A 222 ISTAKQLNPGKPVEV-ETETLAELEEAISAGADIIMLDN----------FSLEMMREAVKINAGRAALENSGNIT-LDNL 289 (320)
T ss_dssp HHHHHHHSTTSCEEE-EESSHHHHHHHHHTTCSEEEEES----------CCHHHHHHHHHHHTTSSEEEEESSCC-HHHH
T ss_pred HHHHHHhCCCCeEEE-EECCHHHHHHHHHcCCCEEEECC----------CCHHHHHHHHHHhCCCCeEEEECCCC-HHHH
Confidence 33555554 346655 67889999999999999999987 13466777777776789999999995 7778
Q ss_pred HHHHHcCCCEEEechH
Q 017718 293 FKALALGASGIFIGRP 308 (367)
Q Consensus 293 ~kal~lGAd~V~ig~~ 308 (367)
.+....|+|.+.+|+.
T Consensus 290 ~~~a~tGVD~isvGal 305 (320)
T 3paj_A 290 KECAETGVDYISVGAL 305 (320)
T ss_dssp HHHHTTTCSEEECTHH
T ss_pred HHHHHcCCCEEEECce
Confidence 8888899999999984
|
| >1q6o_A Humps, 3-keto-L-gulonate 6-phosphate decarboxylase, D-; beta barrel, lyase; HET: LG6; 1.20A {Escherichia coli} SCOP: c.1.2.3 PDB: 1kw1_A* 1q6l_A* 1kv8_A* 1q6q_A* 1q6r_A* 1xbv_A* 1so5_A* 1so4_A* 1xby_A* 1so3_A* 1so6_A* 1xbz_A* 1xbx_A* | Back alignment and structure |
|---|
Probab=96.92 E-value=0.0038 Score=55.85 Aligned_cols=102 Identities=11% Similarity=0.109 Sum_probs=64.9
Q ss_pred cCCCEEEEec--CCHHHHHHHHHcCCcEEEEcCCCCC----CCCCccchHHHHHHHHHHhcCCCcEEEecCCCCHHHHHH
Q 017718 221 TKLPILVKGV--LTAEDARIAVQAGAAGIIVSNHGAR----QLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFK 294 (367)
Q Consensus 221 ~~~Pv~vK~v--~~~~~a~~~~~~G~d~i~vs~~gg~----~~~~~~~~~~~l~~i~~~~~~~~~via~GGI~~~~dv~k 294 (367)
.+.++.++.. .+...++.+.+.|.+.+++.- +.. ..++ ..+.+.++++..+..+||+++|||+ ++.+.+
T Consensus 105 ~g~~~~~~ll~~~t~~~~~~l~~~~~~~~vl~~-a~~~~~~G~~g---~~~~i~~lr~~~~~~~~i~v~GGI~-~~~~~~ 179 (216)
T 1q6o_A 105 FNGDVQIELTGYWTWEQAQQWRDAGIGQVVYHR-SRDAQAAGVAW---GEADITAIKRLSDMGFKVTVTGGLA-LEDLPL 179 (216)
T ss_dssp TTCEEEEEECSCCCHHHHHHHHHTTCCEEEEEC-CHHHHHTTCCC---CHHHHHHHHHHHHTTCEEEEESSCC-GGGGGG
T ss_pred cCCCceeeeeeCCChhhHHHHHhcCcHHHHHHH-HHHHHhcCCCC---CHHHHHHHHHhcCCCCcEEEECCcC-hhhHHH
Confidence 4667655433 225566777778888777721 110 0112 3455566665554478899999998 777888
Q ss_pred HHHcCCCEEEechHHHHHhhccChHHHHHHHHHHHHHHH
Q 017718 295 ALALGASGIFIGRPVVYSLAAEGEKGVRRVLEMLREEFE 333 (367)
Q Consensus 295 al~lGAd~V~ig~~~l~~l~~~G~~~v~~~i~~l~~el~ 333 (367)
++.+|||.+.+||+++.+ ..+ .+.++.++++++
T Consensus 180 ~~~aGad~ivvG~~I~~a---~dp---~~~~~~~~~~i~ 212 (216)
T 1q6o_A 180 FKGIPIHVFIAGRSIRDA---ASP---VEAARQFKRSIA 212 (216)
T ss_dssp GTTSCCSEEEESHHHHTS---SCH---HHHHHHHHHHHH
T ss_pred HHHcCCCEEEEeehhcCC---CCH---HHHHHHHHHHHH
Confidence 999999999999998642 122 234555555554
|
| >3nvt_A 3-deoxy-D-arabino-heptulosonate 7-phosphate synth; bifunctional 3-deoxy-7-phosphoheptulonate synthase/chorismat listeria monocytogenes EGD-E; 1.95A {Listeria monocytogenes} PDB: 3tfc_A* | Back alignment and structure |
|---|
Probab=96.92 E-value=0.05 Score=53.12 Aligned_cols=204 Identities=24% Similarity=0.303 Sum_probs=112.4
Q ss_pred CCCCCccceeEcCeeec---cceEeCcccchhccCChhhHHHHHHHHHcCCceee-cCCCCCCHHHHHhhCCCceEEEEe
Q 017718 55 DVSKIDMNTTVLGFKIS---MPIMIAPTAMQKMAHPEGEYATARAASAAGTIMTL-SSWSTSSVEEVASTGPGIRFFQLY 130 (367)
Q Consensus 55 ~~~~vd~st~i~g~~l~---~Pi~iAPm~~~~l~~~~~e~~~a~aa~~~G~~~~v-s~~~~~~~e~i~~~~~~~~~~QLy 130 (367)
....-|+.+++.+..+. .+++++|.+.. ..+.-..++++++++|+.++. +++...+ .+..||
T Consensus 123 ~~~~~~t~i~i~~~~iG~~~~~~Iigpcsve---s~e~a~~~a~~~k~aGa~~vk~q~fkprt---------s~~~f~-- 188 (385)
T 3nvt_A 123 KNKKEDTIVTVKGLPIGNGEPVFVFGPCSVE---SYEQVAAVAESIKAKGLKLIRGGAFKPRT---------SPYDFQ-- 188 (385)
T ss_dssp TTCCSCCCEEETTEEETSSSCEEEEECSBCC---CHHHHHHHHHHHHHTTCCEEECBSSCCCS---------STTSCC--
T ss_pred ccCCCCcEEEECCEEECCCCeEEEEEeCCcC---CHHHHHHHHHHHHHcCCCeEEcccccCCC---------ChHhhc--
Confidence 34445667777766653 36788887654 233345799999999999875 4443211 122233
Q ss_pred ecCCHHHHHHHHHHHHHcCCcEEEEecCCCCCCchhHHhhhhcCCCCccccccccccccCccccccchhhHHHhhhccCc
Q 017718 131 VYKDRNVVAQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLTLKNFQGLDLGKMDEANDSGLAAYVAGQIDR 210 (367)
Q Consensus 131 ~~~d~~~~~~~l~ra~~~G~~ai~itvd~p~~g~r~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~ 210 (367)
+-..+....+.+.+++.|...+. ++--|. .-+....+ .+ -+ .-+..
T Consensus 189 -gl~~egl~~L~~~~~~~Gl~~~t-e~~d~~----~~~~l~~~-vd-~l--------------------------kIgs~ 234 (385)
T 3nvt_A 189 -GLGLEGLKILKRVSDEYGLGVIS-EIVTPA----DIEVALDY-VD-VI--------------------------QIGAR 234 (385)
T ss_dssp -CCTHHHHHHHHHHHHHHTCEEEE-ECCSGG----GHHHHTTT-CS-EE--------------------------EECGG
T ss_pred -CCCHHHHHHHHHHHHHcCCEEEE-ecCCHH----HHHHHHhh-CC-EE--------------------------EECcc
Confidence 22345566666777788877653 222111 11111000 00 00 00001
Q ss_pred cc-cHHHHH--hhcCCCEEEEecC--CHHH----HHHHHHcCCcEEEEcCCCCCCCCC-c--cchHHHHHHHHHHhcCCC
Q 017718 211 SL-SWKWLQ--TITKLPILVKGVL--TAED----ARIAVQAGAAGIIVSNHGARQLDY-V--PATIMALEEVVKATQGRI 278 (367)
Q Consensus 211 ~~-~~~~l~--~~~~~Pv~vK~v~--~~~~----a~~~~~~G~d~i~vs~~gg~~~~~-~--~~~~~~l~~i~~~~~~~~ 278 (367)
.. ++..++ ..+++||++|..+ +.++ ++.+.+.|.+-|++--.|.++... . ...+..++.+++.. .+
T Consensus 235 ~~~n~~LL~~~a~~gkPVilk~G~~~t~~e~~~Ave~i~~~Gn~~i~L~~rG~s~yp~~~~~~ldl~~i~~lk~~~--~l 312 (385)
T 3nvt_A 235 NMQNFELLKAAGRVDKPILLKRGLSATIEEFIGAAEYIMSQGNGKIILCERGIRTYEKATRNTLDISAVPILKKET--HL 312 (385)
T ss_dssp GTTCHHHHHHHHTSSSCEEEECCTTCCHHHHHHHHHHHHTTTCCCEEEEECCBCCSCCSSSSBCCTTHHHHHHHHB--SS
T ss_pred cccCHHHHHHHHccCCcEEEecCCCCCHHHHHHHHHHHHHcCCCeEEEEECCCCCCCCCCccccCHHHHHHHHHhc--CC
Confidence 11 223222 3468999999875 5555 455667787666665334443322 1 22455677776655 68
Q ss_pred cEEEe----cCCCCH--HHHHHHHHcCCCEEEechH
Q 017718 279 PVFLD----GGVRRG--TDVFKALALGASGIFIGRP 308 (367)
Q Consensus 279 ~via~----GGI~~~--~dv~kal~lGAd~V~ig~~ 308 (367)
||+.| +|-+.- .=...|.++|||+++|=.-
T Consensus 313 pV~~D~th~~G~r~~v~~~a~AAvA~GA~gl~iE~H 348 (385)
T 3nvt_A 313 PVMVDVTHSTGRKDLLLPCAKAALAIEADGVMAEVH 348 (385)
T ss_dssp CEEEEHHHHHCCGGGHHHHHHHHHHTTCSEEEEEBC
T ss_pred CEEEcCCCCCCccchHHHHHHHHHHhCCCEEEEEec
Confidence 99887 333332 2245688899999999873
|
| >4gj1_A 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino) methylideneamino] imidazole-4-carboxamide...; HISA, csgid, niaid,; 2.15A {Campylobacter jejuni subsp} | Back alignment and structure |
|---|
Probab=96.89 E-value=0.0011 Score=60.74 Aligned_cols=74 Identities=19% Similarity=0.267 Sum_probs=59.7
Q ss_pred HHHHHHHHHcCCcEEEEcCCCCCCCCCccchHHHHHHHHHHhcCCCcEEEecCCCCHHHHHHHHHcCCCEEEechHH
Q 017718 233 AEDARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFIGRPV 309 (367)
Q Consensus 233 ~~~a~~~~~~G~d~i~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~~~via~GGI~~~~dv~kal~lGAd~V~ig~~~ 309 (367)
.+.|+...+.|+|.+.+-.-.+ ...+.....+.+.++.+.+ .+|+...|||++-+|+.+.|.+|||-|.+++..
T Consensus 34 ~~~a~~~~~~gad~lhvvDld~-a~~~~~~~~~~i~~i~~~~--~~pl~vGGGIrs~e~~~~~l~~GadkVii~t~a 107 (243)
T 4gj1_A 34 LKKFKEYEKAGAKELHLVDLTG-AKDPSKRQFALIEKLAKEV--SVNLQVGGGIRSKEEVKALLDCGVKRVVIGSMA 107 (243)
T ss_dssp HHHHHHHHHHTCCEEEEEEHHH-HHCGGGCCHHHHHHHHHHC--CSEEEEESSCCCHHHHHHHHHTTCSEEEECTTT
T ss_pred HHHHHHHHHCCCCEEEEEecCc-ccccchhHHHHHHHHHHhc--CCCeEeccccccHHHHHHHHHcCCCEEEEcccc
Confidence 3668999999999998743111 0123456778888888877 799999999999999999999999999999954
|
| >3nl6_A Thiamine biosynthetic bifunctional enzyme; thiamin biosynthesis, eukaryoyes, transferase; HET: TPS ACP; 2.61A {Candida glabrata} PDB: 3nl2_A* 3nl5_A* 3nl3_A* 3nm3_A* 3nm1_A* | Back alignment and structure |
|---|
Probab=96.88 E-value=0.0085 Score=61.17 Aligned_cols=97 Identities=13% Similarity=0.065 Sum_probs=66.5
Q ss_pred HHHHHhhcC-CCEEEEecCCHHHHHHHHHcC---CcEEEEcCCCCC-CC-CC--ccchHHHHHHHHHHhc----CCCcEE
Q 017718 214 WKWLQTITK-LPILVKGVLTAEDARIAVQAG---AAGIIVSNHGAR-QL-DY--VPATIMALEEVVKATQ----GRIPVF 281 (367)
Q Consensus 214 ~~~l~~~~~-~Pv~vK~v~~~~~a~~~~~~G---~d~i~vs~~gg~-~~-~~--~~~~~~~l~~i~~~~~----~~~~vi 281 (367)
...+|+..+ -.++---+.+.++++.+.+.| +|+|.++--..+ +. +. .+..++.+.++.+.+. .++|++
T Consensus 98 ~~~ar~~lg~~~iiG~S~ht~eea~~A~~~G~~~aDYv~~Gpvf~T~tK~~~~~~~~G~~~l~~i~~~~~~~~~~~iPvv 177 (540)
T 3nl6_A 98 IPMIRKLVGPDMVIGWSVGFPEEVDELSKMGPDMVDYIGVGTLFPTLTKKNPKKAPMGTAGAIRVLDALERNNAHWCRTV 177 (540)
T ss_dssp HHHHHHHHCTTSEEEEEECSHHHHHHHHHTCC--CCEEEESCCSCCCCCC----CCCHHHHHHHHHHHHHHTTCTTCEEE
T ss_pred HHHHHHHhCCCCEEEEECCCHHHHHHHHHcCCCCCCEEEEcCCCCCCCCCCcCCCCCCHHHHHHHHHHHHhhccCCCCEE
Confidence 335555443 223333347899999999999 999998532211 11 11 1234667777766541 379999
Q ss_pred EecCCCCHHHHHHHHH--------cCCCEEEechHHHH
Q 017718 282 LDGGVRRGTDVFKALA--------LGASGIFIGRPVVY 311 (367)
Q Consensus 282 a~GGI~~~~dv~kal~--------lGAd~V~ig~~~l~ 311 (367)
+.||| +.+++.+.+. .|||+|.+++.++.
T Consensus 178 AIGGI-~~~ni~~v~~~~~~~g~~~GadgvAVvsaI~~ 214 (540)
T 3nl6_A 178 GIGGL-HPDNIERVLYQCVSSNGKRSLDGICVVSDIIA 214 (540)
T ss_dssp EESSC-CTTTHHHHHHHCBCTTSSCBCSCEEESHHHHT
T ss_pred EEcCC-CHHHHHHHHHhhcccccccCceEEEEeHHHhc
Confidence 99999 7899999998 89999999998863
|
| >3ve9_A Orotidine-5'-phosphate decarboxylase; TIM barrel fold, orotidine 5'-monopho decarboxylase, lyase; 1.45A {Metallosphaera sedula} PDB: 3ve7_A | Back alignment and structure |
|---|
Probab=96.87 E-value=0.0022 Score=57.74 Aligned_cols=86 Identities=21% Similarity=0.203 Sum_probs=59.9
Q ss_pred HHHHHHHHcCCcEEEEcCCCCCCCCCccchHHHHHHHHHHhcCCCcEEEecCCCC-HHHHHHHHHcCCCEEEechHHHHH
Q 017718 234 EDARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRR-GTDVFKALALGASGIFIGRPVVYS 312 (367)
Q Consensus 234 ~~a~~~~~~G~d~i~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~~~via~GGI~~-~~dv~kal~lGAd~V~ig~~~l~~ 312 (367)
+-++.+.++|+||++++.+ ..+.+..+++.++ + .++.++||+- +.+..+++..|||.+.+||+++.+
T Consensus 119 ~~a~~a~~~G~~GvV~sat----------~~~e~~~ir~~~~-~-f~~v~pGI~~~g~~~~~a~~~Gad~iVvGr~I~~a 186 (215)
T 3ve9_A 119 YLREVARRVNPKGFVAPAT----------RPSMISRVKGDFP-D-KLVISPGVGTQGAKPGIALCHGADYEIVGRSVYQS 186 (215)
T ss_dssp HHHHHHHHHCCSEEECCTT----------SHHHHHHHHHHCT-T-SEEEECCTTSTTCCTTHHHHTTCSEEEECHHHHTS
T ss_pred HHHHHHHHcCCCceeeCCC----------CHHHHHHHHHhCC-C-cEEEcCCCCcCcCCHHHHHHcCCCEEEeCHHHcCC
Confidence 4577888999999998531 2345566776665 4 6888999984 336777889999999999999853
Q ss_pred hhccChHHHHHHHHHHHHHHHHHHH
Q 017718 313 LAAEGEKGVRRVLEMLREEFELAMA 337 (367)
Q Consensus 313 l~~~G~~~v~~~i~~l~~el~~~m~ 337 (367)
..+ ...++.+++|++....
T Consensus 187 ---~dp---~~a~~~i~~~i~~~~~ 205 (215)
T 3ve9_A 187 ---ADP---VRKLEEIVRSQEEVLS 205 (215)
T ss_dssp ---SSH---HHHHHHHHHHHHHHC-
T ss_pred ---CCH---HHHHHHHHHHHHHHHH
Confidence 222 2355667777665543
|
| >1qpo_A Quinolinate acid phosphoribosyl transferase; type II prtase, de novo NAD biosynthesis, PRPP, phosphoribos transferase; 2.40A {Mycobacterium tuberculosis H37RV} SCOP: c.1.17.1 d.41.2.1 PDB: 1qpn_A 1qpq_A* 1qpr_A* | Back alignment and structure |
|---|
Probab=96.85 E-value=0.0027 Score=59.63 Aligned_cols=84 Identities=14% Similarity=0.169 Sum_probs=62.2
Q ss_pred HHHHHhhcC-CCEEEEecCCHHHHHHHHHcCCcEEEEcCCCCCCCCCccchHHHHHHHHHHhcC---CCcEEEecCCCCH
Q 017718 214 WKWLQTITK-LPILVKGVLTAEDARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQG---RIPVFLDGGVRRG 289 (367)
Q Consensus 214 ~~~l~~~~~-~Pv~vK~v~~~~~a~~~~~~G~d~i~vs~~gg~~~~~~~~~~~~l~~i~~~~~~---~~~via~GGI~~~ 289 (367)
|+..|+..+ .|+.+ .+.+.++++.+.++|+|.|.+.|- +.+.+.++++.+++ +++|.++||| +.
T Consensus 185 v~~ar~~~~~~~I~V-ev~t~eea~eal~aGaD~I~LDn~----------~~~~~~~~v~~l~~~~~~v~ieaSGGI-t~ 252 (284)
T 1qpo_A 185 LRAVRNAAPDLPCEV-EVDSLEQLDAVLPEKPELILLDNF----------AVWQTQTAVQRRDSRAPTVMLESSGGL-SL 252 (284)
T ss_dssp HHHHHHHCTTSCEEE-EESSHHHHHHHGGGCCSEEEEETC----------CHHHHHHHHHHHHHHCTTCEEEEESSC-CT
T ss_pred HHHHHHhCCCCCEEE-EeCCHHHHHHHHHcCCCEEEECCC----------CHHHHHHHHHHhhccCCCeEEEEECCC-CH
Confidence 445555542 35655 677899999999999999999871 22334444444333 7999999999 67
Q ss_pred HHHHHHHHcCCCEEEechHH
Q 017718 290 TDVFKALALGASGIFIGRPV 309 (367)
Q Consensus 290 ~dv~kal~lGAd~V~ig~~~ 309 (367)
+.+.++...|+|.+.+|+..
T Consensus 253 ~~i~~~a~tGVD~isvG~l~ 272 (284)
T 1qpo_A 253 QTAATYAETGVDYLAVGALT 272 (284)
T ss_dssp TTHHHHHHTTCSEEECGGGT
T ss_pred HHHHHHHhcCCCEEEECHHH
Confidence 88999999999999999843
|
| >1xg4_A Probable methylisocitrate lyase; 2-methylisocitrate lyase/inhibitor complex, isocitrate lyase superfamily; HET: ICT; 1.60A {Escherichia coli} PDB: 1xg3_A* 1mum_A 1oqf_A 1ujq_A 1o5q_A | Back alignment and structure |
|---|
Probab=96.80 E-value=0.077 Score=49.91 Aligned_cols=179 Identities=12% Similarity=0.040 Sum_probs=108.5
Q ss_pred hHHHHHHHHHcCCceee-cCC----C--------CCCHHHHH-------hhCCCceEEEE---eecCCHHHHHHHHHHHH
Q 017718 90 EYATARAASAAGTIMTL-SSW----S--------TSSVEEVA-------STGPGIRFFQL---YVYKDRNVVAQLVRRAE 146 (367)
Q Consensus 90 e~~~a~aa~~~G~~~~v-s~~----~--------~~~~e~i~-------~~~~~~~~~QL---y~~~d~~~~~~~l~ra~ 146 (367)
|...|+.+.+.|+..+. |.. + ..+++++. ...+.|....+ | +.+++...+.+++.+
T Consensus 26 D~~sA~~~~~aG~~ai~vs~~~~a~~~~G~pD~~~vt~~em~~~~~~I~~~~~~PviaD~d~Gy-g~~~~~~~~~v~~l~ 104 (295)
T 1xg4_A 26 NANHALLAQRAGYQAIYLSGGGVAAGSLGLPDLGISTLDDVLTDIRRITDVCSLPLLVDADIGF-GSSAFNVARTVKSMI 104 (295)
T ss_dssp SHHHHHHHHHTTCSCEEECHHHHHHTTTCCCSSSCSCHHHHHHHHHHHHHHCCSCEEEECTTCS-SSSHHHHHHHHHHHH
T ss_pred CHHHHHHHHHcCCCEEEECchHhhhhhcCCCCCCCCCHHHHHHHHHHHHhhCCCCEEecCCccc-CCCHHHHHHHHHHHH
Confidence 56899999999988664 311 1 13555543 33345677777 5 347888888999999
Q ss_pred HcCCcEEEEecCCCCCCchhHHhhhhcCCCCccccccccccccCccccccchhhHHHhhhccCccccHHHHHhhc-CCCE
Q 017718 147 RAGFKAIALTVDTPRLGRREADIKNRFTLPPFLTLKNFQGLDLGKMDEANDSGLAAYVAGQIDRSLSWKWLQTIT-KLPI 225 (367)
Q Consensus 147 ~~G~~ai~itvd~p~~g~r~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~l~~~~-~~Pv 225 (367)
++|+.++.|.=.+. |++.. .+.+ ..+.+ ..+++. .++.+++.. +.++
T Consensus 105 ~aGa~gv~iEd~~~---------------~k~cg--H~~g---k~L~p-----~~~~~~-------~I~Aa~~a~~~~~~ 152 (295)
T 1xg4_A 105 KAGAAGLHIEDQVG---------------AKRSG--HRPN---KAIVS-----KEEMVD-------RIRAAVDAKTDPDF 152 (295)
T ss_dssp HHTCSEEEEECBCS---------------SCCCT--TSSS---CCBCC-----HHHHHH-------HHHHHHHHCSSTTS
T ss_pred HcCCeEEEECCCCC---------------CcccC--CCCC---CccCC-----HHHHHH-------HHHHHHHhccCCCc
Confidence 99999998754331 21110 0000 00000 000000 122333322 4567
Q ss_pred EEEecCC----------HHHHHHHHHcCCcEEEEcCCCCCCCCCccchHHHHHHHHHHhcCCCcEEEecCC--CCH-HHH
Q 017718 226 LVKGVLT----------AEDARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGV--RRG-TDV 292 (367)
Q Consensus 226 ~vK~v~~----------~~~a~~~~~~G~d~i~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~~~via~GGI--~~~-~dv 292 (367)
.+....+ .+.|+.+.++|||.|.+- + +++.+.+.++.+.+ ++|++++.-. .++ ...
T Consensus 153 ~i~aRtda~~~~gl~~ai~ra~ay~eAGAd~i~~e--~-------~~~~~~~~~i~~~~--~iP~~~N~~~~g~~p~~~~ 221 (295)
T 1xg4_A 153 VIMARTDALAVEGLDAAIERAQAYVEAGAEMLFPE--A-------ITELAMYRQFADAV--QVPILANITEFGATPLFTT 221 (295)
T ss_dssp EEEEEECCHHHHCHHHHHHHHHHHHHTTCSEEEET--T-------CCSHHHHHHHHHHH--CSCBEEECCSSSSSCCCCH
T ss_pred EEEEecHHhhhcCHHHHHHHHHHHHHcCCCEEEEe--C-------CCCHHHHHHHHHHc--CCCEEEEecccCCCCCCCH
Confidence 6766532 245888999999999993 2 35678888888888 7999875532 222 233
Q ss_pred HHHHHcCCCEEEechHHHHH
Q 017718 293 FKALALGASGIFIGRPVVYS 312 (367)
Q Consensus 293 ~kal~lGAd~V~ig~~~l~~ 312 (367)
.+.-.+|.+.|.+|...+.+
T Consensus 222 ~eL~~~G~~~v~~~~~~~~a 241 (295)
T 1xg4_A 222 DELRSAHVAMALYPLSAFRA 241 (295)
T ss_dssp HHHHHTTCSEEEESSHHHHH
T ss_pred HHHHHcCCCEEEEChHHHHH
Confidence 44446999999999987765
|
| >1w0m_A TIM, triosephosphate isomerase; glycolysis, gluconeogenesis; 2.5A {Thermoproteus tenax} SCOP: c.1.1.1 | Back alignment and structure |
|---|
Probab=96.77 E-value=0.012 Score=53.42 Aligned_cols=37 Identities=30% Similarity=0.529 Sum_probs=34.2
Q ss_pred cCCCcEEEecCCCCHHHHHHHHHcCCCEEEechHHHH
Q 017718 275 QGRIPVFLDGGVRRGTDVFKALALGASGIFIGRPVVY 311 (367)
Q Consensus 275 ~~~~~via~GGI~~~~dv~kal~lGAd~V~ig~~~l~ 311 (367)
..+++|+.-|||.++.|+..+...|+|++.||++++.
T Consensus 171 ~~~~~ilyggsV~~~n~~~~~~~~giDG~LVG~a~l~ 207 (226)
T 1w0m_A 171 FPEVSVITGAGIESGDDVAAALRLGTRGVLLASAAVK 207 (226)
T ss_dssp CTTSEEEEESSCCSHHHHHHHHHTTCSEEEECHHHHT
T ss_pred cCCCEEEEeCCCCcHHHHHHHHhCCCCEEEECHHHHC
Confidence 4578999999999999999999999999999999886
|
| >1y0e_A Putative N-acetylmannosamine-6-phosphate 2-epimer; mannac-6-P epimerase, NANE, structural genomics, protein STR initiative, PSI; 1.95A {Staphylococcus aureus subsp} SCOP: c.1.2.5 | Back alignment and structure |
|---|
Probab=96.70 E-value=0.031 Score=49.70 Aligned_cols=118 Identities=11% Similarity=0.073 Sum_probs=79.4
Q ss_pred CCHHHHHHHHHHHHHcCCcEEEEecCCCCCCchhHHhhhhcCCCCccccccccccccCccccccchhhHHHhhhccCccc
Q 017718 133 KDRNVVAQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLTLKNFQGLDLGKMDEANDSGLAAYVAGQIDRSL 212 (367)
Q Consensus 133 ~d~~~~~~~l~ra~~~G~~ai~itvd~p~~g~r~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~ 212 (367)
.+++.+.+++++++++|++.+-+ +.|-
T Consensus 20 ~~~~~~~~~a~~~~~~Ga~~i~~--~~~~--------------------------------------------------- 46 (223)
T 1y0e_A 20 HSSFIMSKMALAAYEGGAVGIRA--NTKE--------------------------------------------------- 46 (223)
T ss_dssp CCHHHHHHHHHHHHHHTCSEEEE--ESHH---------------------------------------------------
T ss_pred CCCccHHHHHHHHHHCCCeeecc--CCHH---------------------------------------------------
Confidence 36788889999999999998743 2100
Q ss_pred cHHHHHhhcCCCEEE--E-e--------cCCHHHHHHHHHcCCcEEEEcCCCCCCCCCccchHHHHHHHHHHhcCCCcEE
Q 017718 213 SWKWLQTITKLPILV--K-G--------VLTAEDARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVF 281 (367)
Q Consensus 213 ~~~~l~~~~~~Pv~v--K-~--------v~~~~~a~~~~~~G~d~i~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~~~vi 281 (367)
..+.+++.+++|++- | . ..+.+.+..+.++|+|.|.+...-. .+......+.+.++++..+ ..+++
T Consensus 47 ~i~~i~~~~~~pv~~~~~~~~~~~~~~i~~~~~~i~~~~~~Gad~v~l~~~~~--~~p~~~~~~~i~~~~~~~~-~~~v~ 123 (223)
T 1y0e_A 47 DILAIKETVDLPVIGIVKRDYDHSDVFITATSKEVDELIESQCEVIALDATLQ--QRPKETLDELVSYIRTHAP-NVEIM 123 (223)
T ss_dssp HHHHHHHHCCSCEEEECBCCCTTCCCCBSCSHHHHHHHHHHTCSEEEEECSCS--CCSSSCHHHHHHHHHHHCT-TSEEE
T ss_pred HHHHHHHhcCCCEEeeeccCCCccccccCCcHHHHHHHHhCCCCEEEEeeecc--cCcccCHHHHHHHHHHhCC-CceEE
Confidence 123566667788741 1 1 1346778899999999999843111 1111234567777777653 45665
Q ss_pred EecCCCCHHHHHHHHHcCCCEEEechH
Q 017718 282 LDGGVRRGTDVFKALALGASGIFIGRP 308 (367)
Q Consensus 282 a~GGI~~~~dv~kal~lGAd~V~ig~~ 308 (367)
. ++.+.+++.++..+|+|.++++.+
T Consensus 124 ~--~~~t~~e~~~~~~~G~d~i~~~~~ 148 (223)
T 1y0e_A 124 A--DIATVEEAKNAARLGFDYIGTTLH 148 (223)
T ss_dssp E--ECSSHHHHHHHHHTTCSEEECTTT
T ss_pred e--cCCCHHHHHHHHHcCCCEEEeCCC
Confidence 5 578999999999999999988654
|
| >3o07_A Pyridoxine biosynthesis protein SNZ1; (beta/alpha)8-barrel, pyridoxal 5-phosphate synthase, PLP G3 SNO1, biosynthetic protein; HET: 1GP; 1.80A {Saccharomyces cerevisiae} PDB: 3o06_A 3o05_A* 3fem_A | Back alignment and structure |
|---|
Probab=96.65 E-value=0.0011 Score=61.57 Aligned_cols=119 Identities=17% Similarity=0.120 Sum_probs=80.1
Q ss_pred HHHHHHHHcCCcEEEEecCCCCCCchhHHhhhhcCCCCccccccccccccCccccccchhhHHHhhhccCccccHHHHHh
Q 017718 140 QLVRRAERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLTLKNFQGLDLGKMDEANDSGLAAYVAGQIDRSLSWKWLQT 219 (367)
Q Consensus 140 ~~l~ra~~~G~~ai~itvd~p~~g~r~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~l~~ 219 (367)
+..+.+|++|+.++.+-..||. |+|... ++ .+..+| -.++.+++
T Consensus 22 eqa~iae~aGa~av~~l~~~p~------d~r~~g----Gv-------------------------~Rm~dp-~~I~~I~~ 65 (291)
T 3o07_A 22 EQAKIAEKSGACAVMALESIPA------DMRKSG----KV-------------------------CRMSDP-KMIKDIMN 65 (291)
T ss_dssp HHHHHHHHHTCSEEEECSSCHH------HHHTTT----CC-------------------------CCCCCH-HHHHHHHT
T ss_pred HHHHHHHHhCchhhhhccCCCc------hhhhcC----Cc-------------------------cccCCH-HHHHHHHH
Confidence 4577889999999999999986 444111 00 010111 14568889
Q ss_pred hcCCCEEEEec-CCHHHHHHHHHcCCcEEEEcCCCCCCCCCccchHHHHHHHHHHhcCCCcEEEecCCCCHHHHHHHHHc
Q 017718 220 ITKLPILVKGV-LTAEDARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALAL 298 (367)
Q Consensus 220 ~~~~Pv~vK~v-~~~~~a~~~~~~G~d~i~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~~~via~GGI~~~~dv~kal~l 298 (367)
.+++||+-|.. .+..+|+.+.++|+|.|.-|. +-+ ..+....|.+. .-++|+++ |++|-++++.++..
T Consensus 66 aVsIPVm~k~righ~~EAqilea~GaD~IDese-vlt-------pad~~~~I~k~-~f~vpfv~--~~~~l~EAlrri~e 134 (291)
T 3o07_A 66 SVSIPVMAKVRIGHFVEAQIIEALEVDYIDESE-VLT-------PADWTHHIEKD-KFKVPFVC--GAKDLGEALRRINE 134 (291)
T ss_dssp TCSSCEEEEEETTCHHHHHHHHHTTCSEEEEET-TSC-------CSCSSCCCCGG-GCSSCEEE--EESSHHHHHHHHHH
T ss_pred hCCCCeEEEEecCcHHHHHHHHHcCCCEEeccc-CCC-------HHHHHHHhhhh-cCCCcEEe--eCCCHHHHHHHHHC
Confidence 99999999986 568899999999999997652 111 11111112111 11566665 58999999999999
Q ss_pred CCCEEEe
Q 017718 299 GASGIFI 305 (367)
Q Consensus 299 GAd~V~i 305 (367)
||+.|.-
T Consensus 135 GA~mIrT 141 (291)
T 3o07_A 135 GAAMIRT 141 (291)
T ss_dssp TCSEEEE
T ss_pred CCCEEEe
Confidence 9998864
|
| >4dbe_A Orotidine 5'-phosphate decarboxylase; TIM barrel, orotidine 5'-monophosphate decarboxylase, inhibi lyase-lyase inhibitor complex; HET: BMP; 1.79A {Sulfolobus solfataricus} | Back alignment and structure |
|---|
Probab=96.61 E-value=0.0059 Score=55.21 Aligned_cols=88 Identities=14% Similarity=0.164 Sum_probs=60.5
Q ss_pred HHHHHHHHHcCCcEEEEcCCCCCCCCCccchHHHHHHHHHHhcCCCcEEEecCCCCH-HHHHHHHHcCCCEEEechHHHH
Q 017718 233 AEDARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRG-TDVFKALALGASGIFIGRPVVY 311 (367)
Q Consensus 233 ~~~a~~~~~~G~d~i~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~~~via~GGI~~~-~dv~kal~lGAd~V~ig~~~l~ 311 (367)
.+-++.+.++|+||++++. ...+.+..+++.++ + -++..+||+-. .+..+++..|||.+.+|||+..
T Consensus 125 ~~~a~~a~~~g~~GvV~sa----------t~p~e~~~ir~~~~-~-~~~vtPGI~~~g~tp~~a~~~Gad~iVVGR~I~~ 192 (222)
T 4dbe_A 125 DYIKNVIREISPKGIVVGG----------TKLDHITQYRRDFE-K-MTIVSPGMGSQGGSYGDAVCAGADYEIIGRSIYN 192 (222)
T ss_dssp HHHHHHHHHHCCSEEEECT----------TCHHHHHHHHHHCT-T-CEEEECCBSTTSBCTTHHHHHTCSEEEECHHHHT
T ss_pred HHHHHHHHHhCCCEEEECC----------CCHHHHHHHHHhCC-C-CEEEcCCcccCccCHHHHHHcCCCEEEECHHhcC
Confidence 4568889999999999853 11244566666665 4 57788999743 2566788899999999999986
Q ss_pred HhhccChHHHHHHHHHHHHHHHHHHHH
Q 017718 312 SLAAEGEKGVRRVLEMLREEFELAMAL 338 (367)
Q Consensus 312 ~l~~~G~~~v~~~i~~l~~el~~~m~~ 338 (367)
+ ..+ ....+.++++++.....
T Consensus 193 A---~dP---~~aa~~i~~~i~~~~~~ 213 (222)
T 4dbe_A 193 A---GNP---LTALRTINKIIEDKVMK 213 (222)
T ss_dssp S---SSH---HHHHHHHHHHHHHHHHH
T ss_pred C---CCH---HHHHHHHHHHHHHHHHH
Confidence 3 222 23455666666665443
|
| >4gj1_A 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino) methylideneamino] imidazole-4-carboxamide...; HISA, csgid, niaid,; 2.15A {Campylobacter jejuni subsp} | Back alignment and structure |
|---|
Probab=96.56 E-value=0.0065 Score=55.59 Aligned_cols=73 Identities=16% Similarity=0.173 Sum_probs=54.0
Q ss_pred HHHHHHHHcCCcEEEEcCC--CCCCCCCccchHHHHHHHHHHhcCCCcEEEecCCCCHHHHHHHHHcCCCEEEechHHHH
Q 017718 234 EDARIAVQAGAAGIIVSNH--GARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFIGRPVVY 311 (367)
Q Consensus 234 ~~a~~~~~~G~d~i~vs~~--gg~~~~~~~~~~~~l~~i~~~~~~~~~via~GGI~~~~dv~kal~lGAd~V~ig~~~l~ 311 (367)
+.++.+.+.|+..|++..- =|+ -.| +.++.+.++.+.+. ++|||++||+++.+|+.+ +..++++|.+|++|.+
T Consensus 155 ~~~~~~~~~g~~eil~t~Id~DGt--~~G-~d~~l~~~l~~~~~-~ipviasGGv~~~~Dl~~-l~~~~~gvivg~Al~~ 229 (243)
T 4gj1_A 155 EVLDFYSNKGLKHILCTDISKDGT--MQG-VNVRLYKLIHEIFP-NICIQASGGVASLKDLEN-LKGICSGVIVGKALLD 229 (243)
T ss_dssp HHHHHHHTTTCCEEEEEETTC-------C-CCHHHHHHHHHHCT-TSEEEEESCCCSHHHHHH-TTTTCSEEEECHHHHT
T ss_pred HHHHHHhhcCCcEEEeeeeccccc--ccC-CCHHHHHHHHHhcC-CCCEEEEcCCCCHHHHHH-HHccCchhehHHHHHC
Confidence 5577788899999888531 111 112 46778888877652 699999999999999876 4667999999999865
|
| >3cu2_A Ribulose-5-phosphate 3-epimerase; YP_718263.1, ribulose-PHOS epimerase family, structural genomics, joint center for STR genomics, JCSG; 1.91A {Haemophilus somnus} | Back alignment and structure |
|---|
Probab=96.54 E-value=0.0068 Score=55.34 Aligned_cols=68 Identities=9% Similarity=-0.085 Sum_probs=49.2
Q ss_pred cCCcEEEE-cCCCCC-CCCCccchHHHHHHHHHHhcC---CCcEEEecCCCCHHHHHHHHH--cCCCEEEechHHH
Q 017718 242 AGAAGIIV-SNHGAR-QLDYVPATIMALEEVVKATQG---RIPVFLDGGVRRGTDVFKALA--LGASGIFIGRPVV 310 (367)
Q Consensus 242 ~G~d~i~v-s~~gg~-~~~~~~~~~~~l~~i~~~~~~---~~~via~GGI~~~~dv~kal~--lGAd~V~ig~~~l 310 (367)
.++|.|.+ +-+.|. +....+...+.+.++++.... +++|.++|||. .+.+.++.. .|||.+.+||+++
T Consensus 147 ~~~D~vlvMsv~pgfggq~f~~~~l~ki~~lr~~~~~~~~~~~I~vdGGI~-~~~~~~~~~~~aGad~~VvGSaIf 221 (237)
T 3cu2_A 147 DQIDVIQLLTLDPRNGTKYPSELILDRVIQVEKRLGNRRVEKLINIDGSMT-LELAKYFKQGTHQIDWLVSGSALF 221 (237)
T ss_dssp TTCSEEEEESEETTTTEECCHHHHHHHHHHHHHHHGGGGGGCEEEEESSCC-HHHHHHHHHSSSCCCCEEECGGGG
T ss_pred hcCceeeeeeeccCcCCeecChhHHHHHHHHHHHHHhcCCCceEEEECCcC-HHHHHHHHHhCCCCcEEEEeeHHh
Confidence 47998865 223222 112344566777777776532 58999999998 688999999 9999999999875
|
| >1jvn_A Glutamine, bifunctional histidine biosynthesis protein hishf; substrate channeling, amidotransferase, TIM-barrel AS A SUBS tunnel; HET: 143; 2.10A {Saccharomyces cerevisiae} SCOP: c.1.2.1 c.23.16.1 PDB: 1ox4_B* 1ox5_A* 1ox6_A 1ox4_A | Back alignment and structure |
|---|
Probab=96.54 E-value=0.0024 Score=65.47 Aligned_cols=76 Identities=21% Similarity=0.220 Sum_probs=57.6
Q ss_pred HHHHHHHHcCCcEEEEcCCCCC-CC-CCccchHHHHHHHHHHhcCCCcEEEecCCCCH-----------HHHHHHHHcCC
Q 017718 234 EDARIAVQAGAAGIIVSNHGAR-QL-DYVPATIMALEEVVKATQGRIPVFLDGGVRRG-----------TDVFKALALGA 300 (367)
Q Consensus 234 ~~a~~~~~~G~d~i~vs~~gg~-~~-~~~~~~~~~l~~i~~~~~~~~~via~GGI~~~-----------~dv~kal~lGA 300 (367)
+.|+.+.+.|+|+|.+.+-.+. .. .......+.+.++.+.+ .+||++.|||++. +++.+++.+||
T Consensus 284 ~~A~~~~~~Ga~~l~~~dl~~~~~~~~~~~~~~~~i~~i~~~~--~ipi~vgGGIr~~~d~~~~~~~~~~~a~~~l~aGa 361 (555)
T 1jvn_A 284 QLAQKYYQQGADEVTFLNITSFRDCPLKDTPMLEVLKQAAKTV--FVPLTVGGGIKDIVDVDGTKIPALEVASLYFRSGA 361 (555)
T ss_dssp HHHHHHHHTTCSEEEEEEEC---CCCGGGCHHHHHHHHHTTTC--CSCEEEESSCSCEECTTCCEECHHHHHHHHHHHTC
T ss_pred HHHHHHHHcCCCEEEEEeCCccccccCCCchHHHHHHHHHhhC--CCcEEEeCccccchhcccccchHHHHHHHHHHcCC
Confidence 5588899999999988763321 11 11233577777776655 7999999999998 44999999999
Q ss_pred CEEEechHHHH
Q 017718 301 SGIFIGRPVVY 311 (367)
Q Consensus 301 d~V~ig~~~l~ 311 (367)
|.|.||+..+.
T Consensus 362 d~V~igt~~~~ 372 (555)
T 1jvn_A 362 DKVSIGTDAVY 372 (555)
T ss_dssp SEEEECHHHHH
T ss_pred CEEEECCHHhh
Confidence 99999998754
|
| >2yw3_A 4-hydroxy-2-oxoglutarate aldolase/2-deydro-3- deoxyphosphogluconate aldolase; structural genomics, NPPSFA; 1.67A {Thermus thermophilus} PDB: 2yw4_A | Back alignment and structure |
|---|
Probab=96.44 E-value=0.037 Score=49.22 Aligned_cols=110 Identities=25% Similarity=0.268 Sum_probs=73.6
Q ss_pred cCCHHHHHHHHHHHHHcCCcEEEEecCCCCCCchhHHhhhhcCCCCccccccccccccCccccccchhhHHHhhhccCcc
Q 017718 132 YKDRNVVAQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLTLKNFQGLDLGKMDEANDSGLAAYVAGQIDRS 211 (367)
Q Consensus 132 ~~d~~~~~~~l~ra~~~G~~ai~itvd~p~~g~r~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~ 211 (367)
..+.+...++++.+.+.|++.+-++..+|.. .+
T Consensus 21 ~~~~~~~~~~~~~l~~gGv~~iel~~k~~~~--------------------------------------~~--------- 53 (207)
T 2yw3_A 21 VRGGEDLLGLARVLEEEGVGALEITLRTEKG--------------------------------------LE--------- 53 (207)
T ss_dssp CCSCCCHHHHHHHHHHTTCCEEEEECSSTHH--------------------------------------HH---------
T ss_pred CCCHHHHHHHHHHHHHcCCCEEEEeCCChHH--------------------------------------HH---------
Confidence 4455556677888888999988876543310 00
Q ss_pred ccHHHHHhhcCCCEEEEecCCHHHHHHHHHcCCcEEEEcCCCCCCCCCccchHHHHHHHHHHhcCCCcEEEecCCCCHHH
Q 017718 212 LSWKWLQTITKLPILVKGVLTAEDARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTD 291 (367)
Q Consensus 212 ~~~~~l~~~~~~Pv~vK~v~~~~~a~~~~~~G~d~i~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~~~via~GGI~~~~d 291 (367)
.++.+++ -++.+....+.+.++++.+.++|+|+++.. + ...+.+...++ . .++++. |+.|.++
T Consensus 54 -~i~~~~~-~~~~~gag~vl~~d~~~~A~~~GAd~v~~~---~-------~d~~v~~~~~~-~--g~~~i~--G~~t~~e 116 (207)
T 2yw3_A 54 -ALKALRK-SGLLLGAGTVRSPKEAEAALEAGAAFLVSP---G-------LLEEVAALAQA-R--GVPYLP--GVLTPTE 116 (207)
T ss_dssp -HHHHHTT-SSCEEEEESCCSHHHHHHHHHHTCSEEEES---S-------CCHHHHHHHHH-H--TCCEEE--EECSHHH
T ss_pred -HHHHHhC-CCCEEEeCeEeeHHHHHHHHHcCCCEEEcC---C-------CCHHHHHHHHH-h--CCCEEe--cCCCHHH
Confidence 1124444 345555555677899999999999999652 1 12233333332 3 467665 3999999
Q ss_pred HHHHHHcCCCEEEe
Q 017718 292 VFKALALGASGIFI 305 (367)
Q Consensus 292 v~kal~lGAd~V~i 305 (367)
+.+++.+|||.|.+
T Consensus 117 ~~~A~~~Gad~v~~ 130 (207)
T 2yw3_A 117 VERALALGLSALKF 130 (207)
T ss_dssp HHHHHHTTCCEEEE
T ss_pred HHHHHHCCCCEEEE
Confidence 99999999999988
|
| >3iwp_A Copper homeostasis protein CUTC homolog; conserved sequence motif, metal-binding site, polymorphism, metal binding protein; 2.50A {Homo sapiens} | Back alignment and structure |
|---|
Probab=96.38 E-value=0.039 Score=51.53 Aligned_cols=68 Identities=16% Similarity=0.295 Sum_probs=48.9
Q ss_pred HHHHHHHHcCCcEEEEcCCCCCCCCCccchHHHHHHHHHHhcCCCcEEEecCCCCHHHHHHHHH-cCCCEEEec
Q 017718 234 EDARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALA-LGASGIFIG 306 (367)
Q Consensus 234 ~~a~~~~~~G~d~i~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~~~via~GGI~~~~dv~kal~-lGAd~V~ig 306 (367)
+..+.+.+.|+|.|-.|+ + ....+.-++.|+++.+..+++++|++.|||+. +.+.+.+. +|++.+=..
T Consensus 170 ~Ale~Li~lGvdrILTSG--~--~~~a~~Gl~~Lk~Lv~~a~~rI~ImaGGGV~~-~Ni~~l~~~tG~~~~H~S 238 (287)
T 3iwp_A 170 AALETLLTLGFERVLTSG--C--DSSALEGLPLIKRLIEQAKGRIVVMPGGGITD-RNLQRILEGSGATEFHCS 238 (287)
T ss_dssp HHHHHHHHHTCSEEEECT--T--SSSTTTTHHHHHHHHHHHTTSSEEEECTTCCT-TTHHHHHHHHCCSEEEEC
T ss_pred HHHHHHHHcCCCEEECCC--C--CCChHHhHHHHHHHHHHhCCCCEEEECCCcCH-HHHHHHHHhhCCCEEeEC
Confidence 446778888999998854 2 22345566777777776666899999999864 55666666 899877543
|
| >3ctl_A D-allulose-6-phosphate 3-epimerase; D-glucitol 6-phosphate, (beta/alpha)8 barrel, carbohydrate metabolism, isomerase; HET: S6P; 2.20A {Escherichia coli} PDB: 3ct7_A* | Back alignment and structure |
|---|
Probab=96.37 E-value=0.019 Score=52.18 Aligned_cols=86 Identities=15% Similarity=0.198 Sum_probs=55.4
Q ss_pred cCCcEEEE-cCCCCC-CCCCccchHHHHHHHHHHhc---CCCcEEEecCCCCHHHHHHHHHcCCCEEEec-hHHHHHhhc
Q 017718 242 AGAAGIIV-SNHGAR-QLDYVPATIMALEEVVKATQ---GRIPVFLDGGVRRGTDVFKALALGASGIFIG-RPVVYSLAA 315 (367)
Q Consensus 242 ~G~d~i~v-s~~gg~-~~~~~~~~~~~l~~i~~~~~---~~~~via~GGI~~~~dv~kal~lGAd~V~ig-~~~l~~l~~ 315 (367)
.++|.|.+ +-+.|. +....+..++.+.++++... .+++|.++|||. .+.+.++..+|||.+.+| |.++.+
T Consensus 127 ~~~D~VlvmsV~pGfggQ~f~~~~l~kI~~lr~~~~~~~~~~~I~VdGGI~-~~~~~~~~~aGAd~~V~G~saif~~--- 202 (231)
T 3ctl_A 127 HKADKITVMTVDPGFAGQPFIPEMLDKLAELKAWREREGLEYEIEVDGSCN-QATYEKLMAAGADVFIVGTSGLFNH--- 202 (231)
T ss_dssp GGCSEEEEESSCTTCSSCCCCTTHHHHHHHHHHHHHHHTCCCEEEEESCCS-TTTHHHHHHHTCCEEEECTTTTGGG---
T ss_pred hcCCEEEEeeeccCcCCccccHHHHHHHHHHHHHHhccCCCceEEEECCcC-HHHHHHHHHcCCCEEEEccHHHhCC---
Confidence 37898865 223332 22335567777777766542 268999999998 567888999999999999 766421
Q ss_pred cChHHHHHHHHHHHHHHH
Q 017718 316 EGEKGVRRVLEMLREEFE 333 (367)
Q Consensus 316 ~G~~~v~~~i~~l~~el~ 333 (367)
... ....++.+++.++
T Consensus 203 ~d~--~~~~~~~l~~~~~ 218 (231)
T 3ctl_A 203 AEN--IDEAWRIMTAQIL 218 (231)
T ss_dssp CSS--HHHHHHHHHHHHH
T ss_pred CCc--HHHHHHHHHHHHH
Confidence 120 2345556655544
|
| >3w01_A Heptaprenylglyceryl phosphate synthase; biosynthesis, prenyltransferases, enzyme catalysis, transfer; HET: PGE; 1.54A {Staphylococcus aureus} PDB: 3w02_A | Back alignment and structure |
|---|
Probab=96.35 E-value=0.012 Score=53.51 Aligned_cols=61 Identities=13% Similarity=0.181 Sum_probs=47.3
Q ss_pred CCcEEEEcCCCCCCCCCccchHHHHHHHHHHhcCCCcEEEecCCCCHHHHHHHHHcCCCEEEechHHHH
Q 017718 243 GAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFIGRPVVY 311 (367)
Q Consensus 243 G~d~i~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~~~via~GGI~~~~dv~kal~lGAd~V~ig~~~l~ 311 (367)
|...|.+-. .|. ....+.+.++++.. .++|++.-|||++++++.++.. |||+|.+|+++..
T Consensus 159 g~~~vY~e~-sG~-----~g~~~~v~~ir~~~-~~~pv~vGfGI~~~e~a~~~~~-gAD~VVVGSai~~ 219 (235)
T 3w01_A 159 RLPVMYIEY-SGI-----YGDVSKVQAVSEHL-TETQLFYGGGISSEQQATEMAA-IADTIIVGDIIYK 219 (235)
T ss_dssp CCSEEEEEC-TTS-----CCCHHHHHHHHTTC-SSSEEEEESCCCSHHHHHHHHT-TSSEEEECTHHHH
T ss_pred CCCEEEEec-CCC-----cCCHHHHHHHHHhc-CCCCEEEECCcCCHHHHHHHHc-CCCEEEECCceec
Confidence 677777744 232 12567777777644 2689999999999999988776 9999999998875
|
| >4eiv_A Deoxyribose-phosphate aldolase; chemotherapy, brain cysts, bradyzoite, structural genomics, for structural genomics of infectious diseases; 1.37A {Toxoplasma gondii} PDB: 3qyq_A* | Back alignment and structure |
|---|
Probab=96.33 E-value=0.087 Score=49.23 Aligned_cols=90 Identities=17% Similarity=0.145 Sum_probs=54.5
Q ss_pred HHHhhcCCCEEEEec-----C-CHH----HHHHHHHcCCcEEEEcCCCCCCCCCccchHHHHHHHHHHh-----------
Q 017718 216 WLQTITKLPILVKGV-----L-TAE----DARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKAT----------- 274 (367)
Q Consensus 216 ~l~~~~~~Pv~vK~v-----~-~~~----~a~~~~~~G~d~i~vs~~gg~~~~~~~~~~~~l~~i~~~~----------- 274 (367)
.+++..+ +..+|.+ + +.+ .++.+.++|+|+|-.|. |-......+.....+.+..+..
T Consensus 143 ~v~~a~~-~~~lKVIlEt~~Lt~~e~i~~A~~ia~~AGADFVKTST-Gf~~~gAT~edV~lM~~~v~~~~~~~~~~~~~~ 220 (297)
T 4eiv_A 143 EVKKVVG-PKTLKVVLSGGELQGGDIISRAAVAALEGGADFLQTSS-GLGATHATMFTVHLISIALREYMVRENERIRVE 220 (297)
T ss_dssp HHHHHHT-TSEEEEECCSSCCCCHHHHHHHHHHHHHHTCSEEECCC-SSSSCCCCHHHHHHHHHHHHHHHCC--------
T ss_pred HHHHHhc-CCceEEEEecccCCcHHHHHHHHHHHHHhCCCEEEcCC-CCCCCCCCHHHHHHHHHHHHHHhcccccccccc
Confidence 5665554 5678887 2 333 24678899999999874 2111111122333343333211
Q ss_pred --------cCCCcEEEe-cCCCCHHHHHHHHHcCCCEEEechHHH
Q 017718 275 --------QGRIPVFLD-GGVRRGTDVFKALALGASGIFIGRPVV 310 (367)
Q Consensus 275 --------~~~~~via~-GGI~~~~dv~kal~lGAd~V~ig~~~l 310 (367)
+.++.|=++ ||||+.+|+.+++.+... +|..|+
T Consensus 221 ~~~~~~~tg~~vgvKAs~GGIrt~e~A~~~i~~~~e---lG~~wl 262 (297)
T 4eiv_A 221 GINREGAAVRCIGIKIEVGDVHMAETADFLMQMIFE---NGPRSI 262 (297)
T ss_dssp ----------CCEEEEECTTCCHHHHHHHHHHHHHH---HCGGGC
T ss_pred ccccccccCCceeEEecCCCCCCHHHHHHHHHHHHH---hCcccc
Confidence 357999999 999999999999995544 444443
|
| >3q58_A N-acetylmannosamine-6-phosphate 2-epimerase; TIM beta/alpha barrel, ribulose-phosphate binding barrel, carbohydrate metabolic process; HET: BTB; 1.80A {Salmonella enterica subsp} | Back alignment and structure |
|---|
Probab=96.31 E-value=0.071 Score=48.20 Aligned_cols=83 Identities=17% Similarity=0.094 Sum_probs=56.2
Q ss_pred HHHHHhhcCCCEE--EEe------c---CCHHHHHHHHHcCCcEEEEcCCCCCCCCCcc-chHHHHHHHHHHhcCCCcEE
Q 017718 214 WKWLQTITKLPIL--VKG------V---LTAEDARIAVQAGAAGIIVSNHGARQLDYVP-ATIMALEEVVKATQGRIPVF 281 (367)
Q Consensus 214 ~~~l~~~~~~Pv~--vK~------v---~~~~~a~~~~~~G~d~i~vs~~gg~~~~~~~-~~~~~l~~i~~~~~~~~~vi 281 (367)
++.+|+.+++||+ .|. + .+.+++..+.++|+|.|.+...... .| ...+.+..+.+ . .++++
T Consensus 61 i~~ir~~v~~Pvig~~k~~~~~~~~~I~~~~~~i~~~~~aGad~I~l~~~~~~----~p~~l~~~i~~~~~-~--g~~v~ 133 (229)
T 3q58_A 61 LRTVRPHLSVPIIGIIKRDLTGSPVRITPYLQDVDALAQAGADIIAFDASFRS----RPVDIDSLLTRIRL-H--GLLAM 133 (229)
T ss_dssp HHHHGGGCCSCEEEECBCCCSSCCCCBSCSHHHHHHHHHHTCSEEEEECCSSC----CSSCHHHHHHHHHH-T--TCEEE
T ss_pred HHHHHHhcCCCEEEEEeecCCCCceEeCccHHHHHHHHHcCCCEEEECccccC----ChHHHHHHHHHHHH-C--CCEEE
Confidence 3478888899987 231 1 3467899999999999987532211 12 22334444433 2 45565
Q ss_pred EecCCCCHHHHHHHHHcCCCEEEe
Q 017718 282 LDGGVRRGTDVFKALALGASGIFI 305 (367)
Q Consensus 282 a~GGI~~~~dv~kal~lGAd~V~i 305 (367)
+ .+++.+++.++..+|||.|.+
T Consensus 134 ~--~v~t~eea~~a~~~Gad~Ig~ 155 (229)
T 3q58_A 134 A--DCSTVNEGISCHQKGIEFIGT 155 (229)
T ss_dssp E--ECSSHHHHHHHHHTTCSEEEC
T ss_pred E--ecCCHHHHHHHHhCCCCEEEe
Confidence 5 589999999999999999965
|
| >1l6w_A Fructose-6-phosphate aldolase 1; alpha-beta barrel, domain swapping, lyase; 1.93A {Escherichia coli} SCOP: c.1.10.1 | Back alignment and structure |
|---|
Probab=96.28 E-value=0.11 Score=46.79 Aligned_cols=105 Identities=15% Similarity=0.126 Sum_probs=73.5
Q ss_pred cCCCEEEEecCCHHHHHHHHHcCCcEEEEcCCCCCCCCCccchHHHHHHHH---HHhcCCCcEEEecCCCCHHHHHHHHH
Q 017718 221 TKLPILVKGVLTAEDARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVV---KATQGRIPVFLDGGVRRGTDVFKALA 297 (367)
Q Consensus 221 ~~~Pv~vK~v~~~~~a~~~~~~G~d~i~vs~~gg~~~~~~~~~~~~l~~i~---~~~~~~~~via~GGI~~~~dv~kal~ 297 (367)
-++++-+-.+.+.+.|..+.++|++.|... =||-.+.+.+....+.+++ +..+-+..|++. +++++.++.++..
T Consensus 102 ~GI~vn~TliFS~~QA~~aa~AGa~~iSpf--vgRidd~g~~G~~~i~~~~~~y~~~~~~t~il~A-S~r~~~~v~~~~l 178 (220)
T 1l6w_A 102 EGIPTLGTAVYGAAQGLLSALAGAEYVAPY--VNRIDAQGGSGIQTVTDLHQLLKMHAPQAKVLAA-SFKTPRQALDCLL 178 (220)
T ss_dssp HTCCEEEEEECSHHHHHHHHHHTCSEEEEB--HHHHHHTTSCHHHHHHHHHHHHHHHCTTCEEEEB-CCSSHHHHHHHHH
T ss_pred CCCcEEEEEeCCHHHHHHHHHCCCeEEEec--cchhhcccccHHHHHHHHHHHHHhcCCCeEEeec-ccCCHHHHHHHHH
Confidence 389999999999999999999999988763 2332223333344444444 333335666765 6999999999999
Q ss_pred cCCCEEEechHHHHHhhccCh--HHHHHHHHHH
Q 017718 298 LGASGIFIGRPVVYSLAAEGE--KGVRRVLEML 328 (367)
Q Consensus 298 lGAd~V~ig~~~l~~l~~~G~--~~v~~~i~~l 328 (367)
+|+|.+-+.-.++..+..++. .+++.+.+.+
T Consensus 179 ~G~d~~Tip~~~l~~l~~h~lt~~~v~~F~~D~ 211 (220)
T 1l6w_A 179 AGCESITLPLDVAQQMISYPAVDAAVAKFEQDW 211 (220)
T ss_dssp TTCSEEEECHHHHHHTTCCHHHHHHHHHHHHHH
T ss_pred hCCCeEECCHHHHHHHHcCCChHHHHHHHHHHH
Confidence 999999999888887765442 3444444444
|
| >2h6r_A Triosephosphate isomerase; beta-alpha barrel; 2.30A {Methanocaldococcus jannaschii} | Back alignment and structure |
|---|
Probab=96.27 E-value=0.01 Score=53.42 Aligned_cols=90 Identities=22% Similarity=0.287 Sum_probs=56.3
Q ss_pred cCCCEEEEecCCHHHHHHHHHcCCcEEEEcCCC--CCC---CCCccchHHHHHHHHHHhcCCCcEEEecCCCCHHHHHHH
Q 017718 221 TKLPILVKGVLTAEDARIAVQAGAAGIIVSNHG--ARQ---LDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKA 295 (367)
Q Consensus 221 ~~~Pv~vK~v~~~~~a~~~~~~G~d~i~vs~~g--g~~---~~~~~~~~~~l~~i~~~~~~~~~via~GGI~~~~dv~ka 295 (367)
.++.+++-. .+.++.+++.+.|.+.|.+.+.- |+. ....+...+...+..+....++||++.|||.+++++.++
T Consensus 110 ~Gl~~iv~v-~~~~e~~~~~~~~~~~i~~~~~~~iGtG~~~~t~~~~~~~~~~~~ir~~~~~~~ii~ggGI~~~~~~~~~ 188 (219)
T 2h6r_A 110 LGLETIVCT-NNINTSKAVAALSPDCIAVEPPELIGTGIPVSKANPEVVEGTVRAVKEINKDVKVLCGAGISKGEDVKAA 188 (219)
T ss_dssp HTCEEEEEE-SSSHHHHHHTTTCCSEEEECCCC--------------CSHHHHHHHHHHCTTCEEEECSSCCSHHHHHHH
T ss_pred CCCeEEEEe-CCchHHHHHHhCCCCEEEEEeccccccCCCCccCCHHHHHHHHHHHHhccCCCeEEEEeCcCcHHHHHHH
Confidence 366555543 33445667777888877774421 221 111111122222222333347999999999999999999
Q ss_pred HHcCCCEEEechHHHH
Q 017718 296 LALGASGIFIGRPVVY 311 (367)
Q Consensus 296 l~lGAd~V~ig~~~l~ 311 (367)
...|||+|.+|++++.
T Consensus 189 ~~~gaDgvlVGsAi~~ 204 (219)
T 2h6r_A 189 LDLGAEGVLLASGVVK 204 (219)
T ss_dssp HTTTCCCEEESHHHHT
T ss_pred hhCCCCEEEEcHHHhC
Confidence 9999999999999885
|
| >3khj_A Inosine-5-monophosphate dehydrogenase; enzyme-inhibitor complex, oxidoreductase; HET: IMP C64; 2.80A {Cryptosporidium parvum} | Back alignment and structure |
|---|
Probab=96.27 E-value=0.021 Score=55.33 Aligned_cols=84 Identities=23% Similarity=0.274 Sum_probs=62.8
Q ss_pred HHHhhcCCCEEEEecC-CHHHHHHHHHcCCcEEEEcCCCCCCCCCccchHHHHHHHHHHhcCCCcEEEecCCCCHHHHHH
Q 017718 216 WLQTITKLPILVKGVL-TAEDARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFK 294 (367)
Q Consensus 216 ~l~~~~~~Pv~vK~v~-~~~~a~~~~~~G~d~i~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~~~via~GGI~~~~dv~k 294 (367)
.+++...+|+.+-... +.+.++.+.++|+|.|++....|. .....+.+.++++.+ .+||++ |.+.+.+++.+
T Consensus 89 ~vk~~~~~pvga~ig~~~~e~a~~l~eaGad~I~ld~a~G~----~~~~~~~i~~i~~~~--~~~Viv-g~v~t~e~A~~ 161 (361)
T 3khj_A 89 KVKNSGGLRVGAAIGVNEIERAKLLVEAGVDVIVLDSAHGH----SLNIIRTLKEIKSKM--NIDVIV-GNVVTEEATKE 161 (361)
T ss_dssp HHHHTTCCCCEEEECTTCHHHHHHHHHTTCSEEEECCSCCS----BHHHHHHHHHHHHHC--CCEEEE-EEECSHHHHHH
T ss_pred HHHhccCceEEEEeCCCHHHHHHHHHHcCcCeEEEeCCCCC----cHHHHHHHHHHHHhc--CCcEEE-ccCCCHHHHHH
Confidence 5565567888777653 367899999999999988432221 112346677777766 688887 67899999999
Q ss_pred HHHcCCCEEEec
Q 017718 295 ALALGASGIFIG 306 (367)
Q Consensus 295 al~lGAd~V~ig 306 (367)
+..+|||+|.+|
T Consensus 162 l~~aGaD~I~VG 173 (361)
T 3khj_A 162 LIENGADGIKVG 173 (361)
T ss_dssp HHHTTCSEEEEC
T ss_pred HHHcCcCEEEEe
Confidence 999999999985
|
| >3igs_A N-acetylmannosamine-6-phosphate 2-epimerase 2; energy metabolism, sugars, csgid, carbohydrate metabolism, isomerase; HET: MSE 16G; 1.50A {Salmonella enterica subsp} SCOP: c.1.2.0 | Back alignment and structure |
|---|
Probab=96.21 E-value=0.082 Score=47.86 Aligned_cols=83 Identities=23% Similarity=0.233 Sum_probs=55.9
Q ss_pred HHHHHhhcCCCEEE--Ee------c---CCHHHHHHHHHcCCcEEEEcCCCCCCCCCccc-hHHHHHHHHHHhcCCCcEE
Q 017718 214 WKWLQTITKLPILV--KG------V---LTAEDARIAVQAGAAGIIVSNHGARQLDYVPA-TIMALEEVVKATQGRIPVF 281 (367)
Q Consensus 214 ~~~l~~~~~~Pv~v--K~------v---~~~~~a~~~~~~G~d~i~vs~~gg~~~~~~~~-~~~~l~~i~~~~~~~~~vi 281 (367)
++.+|+.+++||+- |. + .+.+++..+.++|+|.|.+...... .|. ..+.+..+.+ . .++++
T Consensus 61 i~~ir~~v~~Pvig~~k~d~~~~~~~I~~~~~~i~~~~~~Gad~V~l~~~~~~----~p~~l~~~i~~~~~-~--g~~v~ 133 (232)
T 3igs_A 61 LRMTRSLVSVPIIGIIKRDLDESPVRITPFLDDVDALAQAGAAIIAVDGTARQ----RPVAVEALLARIHH-H--HLLTM 133 (232)
T ss_dssp HHHHHTTCCSCEEEECBCCCSSCCCCBSCSHHHHHHHHHHTCSEEEEECCSSC----CSSCHHHHHHHHHH-T--TCEEE
T ss_pred HHHHHHhcCCCEEEEEeecCCCcceEeCccHHHHHHHHHcCCCEEEECccccC----CHHHHHHHHHHHHH-C--CCEEE
Confidence 34788888999862 31 1 3567899999999999987532211 122 2334444432 2 45555
Q ss_pred EecCCCCHHHHHHHHHcCCCEEEe
Q 017718 282 LDGGVRRGTDVFKALALGASGIFI 305 (367)
Q Consensus 282 a~GGI~~~~dv~kal~lGAd~V~i 305 (367)
+ .+.+.+++.++..+|||.|.+
T Consensus 134 ~--~v~t~eea~~a~~~Gad~Ig~ 155 (232)
T 3igs_A 134 A--DCSSVDDGLACQRLGADIIGT 155 (232)
T ss_dssp E--ECCSHHHHHHHHHTTCSEEEC
T ss_pred E--eCCCHHHHHHHHhCCCCEEEE
Confidence 5 589999999999999999965
|
| >2pgw_A Muconate cycloisomerase; enolase superfamily, octamer, small metabolism, PSI-II, NYSGXRC, structural genomics, PR structure initiative; 1.95A {Sinorhizobium meliloti} | Back alignment and structure |
|---|
Probab=96.20 E-value=0.22 Score=48.19 Aligned_cols=121 Identities=17% Similarity=0.069 Sum_probs=85.9
Q ss_pred CCHHHHHHHHHHHHHcCCcEEEEecCCCCCCchhHHhhhhcCCCCccccccccccccCccccccchhhHHHhhhccCccc
Q 017718 133 KDRNVVAQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLTLKNFQGLDLGKMDEANDSGLAAYVAGQIDRSL 212 (367)
Q Consensus 133 ~d~~~~~~~l~ra~~~G~~ai~itvd~p~~g~r~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~ 212 (367)
.+++.+.+.++++.++||+++-+++++. .+.. .+
T Consensus 146 ~~~e~~~~~a~~~~~~Gf~~iKik~g~~-----~~~~-------------------------------~e---------- 179 (384)
T 2pgw_A 146 ETAEELARDAAVGHAQGERVFYLKVGRG-----EKLD-------------------------------LE---------- 179 (384)
T ss_dssp SSHHHHHHHHHHHHHTTCCEEEEECCSC-----HHHH-------------------------------HH----------
T ss_pred CCHHHHHHHHHHHHHcCCCEEEECcCCC-----HHHH-------------------------------HH----------
Confidence 5777788888889999999998877631 0000 00
Q ss_pred cHHHHHhhc-CCCEEEEec--CCHHH----HHHHHHcCCcEEEEcCCCCCCCCCccchHHHHHHHHHHhcCCCcEEEecC
Q 017718 213 SWKWLQTIT-KLPILVKGV--LTAED----ARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGG 285 (367)
Q Consensus 213 ~~~~l~~~~-~~Pv~vK~v--~~~~~----a~~~~~~G~d~i~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~~~via~GG 285 (367)
-.+.+|+.+ ++||.+..- .+.++ ++.+.+.|++.|-- . ..+..++.+.++++.+ ++||++++.
T Consensus 180 ~v~avr~a~gd~~l~vD~n~~~~~~~a~~~~~~l~~~~i~~iEq-------P-~~~~~~~~~~~l~~~~--~iPI~~de~ 249 (384)
T 2pgw_A 180 ITAAVRGEIGDARLRLDANEGWSVHDAINMCRKLEKYDIEFIEQ-------P-TVSWSIPAMAHVREKV--GIPIVADQA 249 (384)
T ss_dssp HHHHHHTTSTTCEEEEECTTCCCHHHHHHHHHHHGGGCCSEEEC-------C-SCTTCHHHHHHHHHHC--SSCEEESTT
T ss_pred HHHHHHHHcCCcEEEEecCCCCCHHHHHHHHHHHHhcCCCEEeC-------C-CChhhHHHHHHHHhhC--CCCEEEeCC
Confidence 123666666 577777643 34444 45677788887751 1 1234678888888877 799999999
Q ss_pred CCCHHHHHHHHHcC-CCEEEechHH
Q 017718 286 VRRGTDVFKALALG-ASGIFIGRPV 309 (367)
Q Consensus 286 I~~~~dv~kal~lG-Ad~V~ig~~~ 309 (367)
+.+..|+.+++..| +|.|++....
T Consensus 250 i~~~~~~~~~i~~~~~d~v~ik~~~ 274 (384)
T 2pgw_A 250 AFTLYDVYEICRQRAADMICIGPRE 274 (384)
T ss_dssp CCSHHHHHHHHHTTCCSEEEECHHH
T ss_pred cCCHHHHHHHHHcCCCCEEEEcchh
Confidence 99999999999986 8999997643
|
| >1vkf_A Glycerol uptake operon antiterminator-related Pro; struc genomics, joint center for structural genomics, JCSG, prote structure initiative; HET: CIT; 1.65A {Thermotoga maritima} SCOP: c.1.29.1 | Back alignment and structure |
|---|
Probab=96.15 E-value=0.0043 Score=54.47 Aligned_cols=64 Identities=11% Similarity=0.036 Sum_probs=48.8
Q ss_pred HHHHHHHcCCcEEEEcCCCCCCCCCccchHHHHHHHHHHhcCCCcEEEecCCCCHHHHHHHHHcCCCEEEechHHHHH
Q 017718 235 DARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFIGRPVVYS 312 (367)
Q Consensus 235 ~a~~~~~~G~d~i~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~~~via~GGI~~~~dv~kal~lGAd~V~ig~~~l~~ 312 (367)
.++.+.+...|.+-+- -++-..+.+.++ .++|||+.|+|++.+|+.+ +..||++|.-++.-||.
T Consensus 120 ~~~~I~~~kPD~iEiL--------Pg~v~p~~I~~v-----~~~PiIaGGlI~t~edv~~-l~aGA~aIsTs~~~LW~ 183 (188)
T 1vkf_A 120 GIEQIETLGVDVVEVL--------PGAVAPKVARKI-----PGRTVIAAGLVETEEEARE-ILKHVSAISTSSRILWK 183 (188)
T ss_dssp HHHHHHHHTCSEEEEE--------SGGGHHHHHTTS-----TTSEEEEESCCCSHHHHHH-HTTTSSEEEECCHHHHT
T ss_pred hhhhccccCCCeEeec--------CCCchHHHHHHh-----cCCCEEEECCcCCHHHHHH-HHCCCeEEEeCCHHHhC
Confidence 3556667788887762 112123455444 3799999999999999999 99999999999988884
|
| >4e38_A Keto-hydroxyglutarate-aldolase/keto-deoxy-phospho aldolase; lyase; 1.64A {Vibrionales bacterium swat-3} | Back alignment and structure |
|---|
Probab=96.14 E-value=0.021 Score=51.88 Aligned_cols=76 Identities=21% Similarity=0.218 Sum_probs=55.4
Q ss_pred HHHHhhcCCC-EEEEecCCHHHHHHHHHcCCcEEEEcCCCCCCCCCccchHHHHHHHHHHhcCCCcEEEecCCCCHHHHH
Q 017718 215 KWLQTITKLP-ILVKGVLTAEDARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVF 293 (367)
Q Consensus 215 ~~l~~~~~~P-v~vK~v~~~~~a~~~~~~G~d~i~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~~~via~GGI~~~~dv~ 293 (367)
+.+++.++.. +....+.+.++++.+.++|+|+|+.- + .+.+.+..+++ . .+|++. |+.|++++.
T Consensus 77 ~~l~~~~~~~~iGaGTVlt~~~a~~Ai~AGA~fIvsP---~-------~~~~vi~~~~~-~--gi~~ip--Gv~TptEi~ 141 (232)
T 4e38_A 77 RLLRQAQPEMLIGAGTILNGEQALAAKEAGATFVVSP---G-------FNPNTVRACQE-I--GIDIVP--GVNNPSTVE 141 (232)
T ss_dssp HHHHHHCTTCEEEEECCCSHHHHHHHHHHTCSEEECS---S-------CCHHHHHHHHH-H--TCEEEC--EECSHHHHH
T ss_pred HHHHHhCCCCEEeECCcCCHHHHHHHHHcCCCEEEeC---C-------CCHHHHHHHHH-c--CCCEEc--CCCCHHHHH
Confidence 3677766433 33344588999999999999999642 1 23444444443 2 678877 689999999
Q ss_pred HHHHcCCCEEEe
Q 017718 294 KALALGASGIFI 305 (367)
Q Consensus 294 kal~lGAd~V~i 305 (367)
+|+.+|||.|.+
T Consensus 142 ~A~~~Gad~vK~ 153 (232)
T 4e38_A 142 AALEMGLTTLKF 153 (232)
T ss_dssp HHHHTTCCEEEE
T ss_pred HHHHcCCCEEEE
Confidence 999999999987
|
| >1vc4_A Indole-3-glycerol phosphate synthase; lyase, tryptophan biosynthesis, riken structural genomics/PR initiative, RSGI, structural genomics; 1.80A {Thermus thermophilus} SCOP: c.1.2.4 | Back alignment and structure |
|---|
Probab=95.93 E-value=0.043 Score=50.49 Aligned_cols=72 Identities=21% Similarity=0.212 Sum_probs=57.1
Q ss_pred HHHHHHHHHcCCcEEEEcCCCCCCCCCccchHHHHHHHHHHhcCCCcEEEecCCCCHHHHHHHHHcCCCEEEechHHH
Q 017718 233 AEDARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFIGRPVV 310 (367)
Q Consensus 233 ~~~a~~~~~~G~d~i~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~~~via~GGI~~~~dv~kal~lGAd~V~ig~~~l 310 (367)
.+.|+...++||++|.|-.-.+ .-....+.|..+++.+ ++||+.-++|.+..++..++++|||+|.++...+
T Consensus 68 ~~~A~~~~~~GA~~isvlt~~~----~f~G~~~~l~~i~~~v--~lPvl~kdfI~d~~qi~~a~~~GAD~VlL~~~~l 139 (254)
T 1vc4_A 68 VEAALAYARGGARAVSVLTEPH----RFGGSLLDLKRVREAV--DLPLLRKDFVVDPFMLEEARAFGASAALLIVALL 139 (254)
T ss_dssp HHHHHHHHHTTCSEEEEECCCS----SSCCCHHHHHHHHHHC--CSCEEEESCCCSHHHHHHHHHTTCSEEEEEHHHH
T ss_pred HHHHHHHHHcCCCEEEEecchh----hhccCHHHHHHHHHhc--CCCEEECCcCCCHHHHHHHHHcCCCEEEECccch
Confidence 4679999999999999842111 1112455677777777 8999999999999999999999999999998765
|
| >1mdl_A Mandelate racemase; isomerase, mandelate pathway, magnesium; HET: RMN SMN; 1.85A {Pseudomonas aeruginosa} SCOP: c.1.11.2 d.54.1.1 PDB: 1mdr_A* 3uxk_A* 3uxl_A* 1dtn_A* 1mra_A* 2mnr_A 1mns_A | Back alignment and structure |
|---|
Probab=95.87 E-value=0.079 Score=50.82 Aligned_cols=119 Identities=17% Similarity=0.224 Sum_probs=84.2
Q ss_pred CCHHHHHHHHHHHHHcCCcEEEEecCCCCCCchhHHhhhhcCCCCccccccccccccCccccccchhhHHHhhhccCccc
Q 017718 133 KDRNVVAQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLTLKNFQGLDLGKMDEANDSGLAAYVAGQIDRSL 212 (367)
Q Consensus 133 ~d~~~~~~~l~ra~~~G~~ai~itvd~p~~g~r~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~ 212 (367)
.+++.+.+.++++.+.||+++-++++++-. + .+.
T Consensus 143 ~~~~~~~~~a~~~~~~Gf~~iKik~g~~~~--~--------------------------------------------~~~ 176 (359)
T 1mdl_A 143 DGVKLATERAVTAAELGFRAVKTRIGYPAL--D--------------------------------------------QDL 176 (359)
T ss_dssp CHHHHHHHHHHHHHHTTCSEEEEECCCSSH--H--------------------------------------------HHH
T ss_pred CCHHHHHHHHHHHHHcCCCEEEEecCCCCH--H--------------------------------------------HHH
Confidence 466777777888889999999887764210 0 000
Q ss_pred -cHHHHHhhc--CCCEEEEec--CCHHH----HHHHHHcCCcEEEEcCCCCCCCCCccchHHHHHHHHHHhcCCCcEEEe
Q 017718 213 -SWKWLQTIT--KLPILVKGV--LTAED----ARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLD 283 (367)
Q Consensus 213 -~~~~l~~~~--~~Pv~vK~v--~~~~~----a~~~~~~G~d~i~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~~~via~ 283 (367)
-.+.+|+.+ ++||.++.- .+.++ ++.+.+.|++.|-- ...+..++.+.++++.+ ++||+++
T Consensus 177 e~v~avr~a~g~~~~l~vDan~~~~~~~a~~~~~~l~~~~i~~iE~--------P~~~~~~~~~~~l~~~~--~iPI~~d 246 (359)
T 1mdl_A 177 AVVRSIRQAVGDDFGIMVDYNQSLDVPAAIKRSQALQQEGVTWIEE--------PTLQHDYEGHQRIQSKL--NVPVQMG 246 (359)
T ss_dssp HHHHHHHHHHCSSSEEEEECTTCSCHHHHHHHHHHHHHHTCSCEEC--------CSCTTCHHHHHHHHHTC--SSCEEEC
T ss_pred HHHHHHHHHhCCCCEEEEECCCCCCHHHHHHHHHHHHHhCCCeEEC--------CCChhhHHHHHHHHHhC--CCCEEeC
Confidence 122666666 578888754 34444 56677889887631 11234677888887766 7999999
Q ss_pred cCCCCHHHHHHHHHcC-CCEEEech
Q 017718 284 GGVRRGTDVFKALALG-ASGIFIGR 307 (367)
Q Consensus 284 GGI~~~~dv~kal~lG-Ad~V~ig~ 307 (367)
+.+.+..|+.+++..| +|.|++-.
T Consensus 247 e~~~~~~~~~~~i~~~~~d~v~ik~ 271 (359)
T 1mdl_A 247 ENWLGPEEMFKALSIGACRLAMPDA 271 (359)
T ss_dssp TTCCSHHHHHHHHHTTCCSEECCBT
T ss_pred CCCCCHHHHHHHHHcCCCCEEeecc
Confidence 9999999999999986 89999964
|
| >2agk_A 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino) methylideneamino] imidazole-4-carboxamide...; TIM alpha/beta barrel; HET: CIT; 1.30A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=95.83 E-value=0.0051 Score=56.91 Aligned_cols=67 Identities=16% Similarity=0.130 Sum_probs=55.1
Q ss_pred HHHHHHHHHcCCcEEEEcCCCCCCCCCccchHHHHHHHHHHhcCCCcEEEecCCCCHHHHHHHHHcCCCEEEechHHH
Q 017718 233 AEDARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFIGRPVV 310 (367)
Q Consensus 233 ~~~a~~~~~~G~d~i~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~~~via~GGI~~~~dv~kal~lGAd~V~ig~~~l 310 (367)
.+.|+...+.|++.+.+-. ++. ...+.+.++.+.+ .+||...|||++- |+.+.+ +||+-|.+|+..+
T Consensus 41 ~~~A~~~~~~Ga~~l~vvD-----L~~--~n~~~i~~i~~~~--~~pv~vgGGir~~-~~~~~l-~Ga~~Viigs~a~ 107 (260)
T 2agk_A 41 SYYAKLYKDRDVQGCHVIK-----LGP--NNDDAAREALQES--PQFLQVGGGINDT-NCLEWL-KWASKVIVTSWLF 107 (260)
T ss_dssp HHHHHHHHHTTCTTCEEEE-----ESS--SCHHHHHHHHHHS--TTTSEEESSCCTT-THHHHT-TTCSCEEECGGGB
T ss_pred HHHHHHHHHcCCCEEEEEe-----CCC--CCHHHHHHHHhcC--CceEEEeCCCCHH-HHHHHh-cCCCEEEECcHHH
Confidence 3678999999999988732 111 4677888888776 7999999999986 999999 9999999999765
|
| >2ovl_A Putative racemase; structural genomics, PSI-2, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.13A {Streptomyces coelicolor A3} PDB: 3ck5_A | Back alignment and structure |
|---|
Probab=95.83 E-value=0.1 Score=50.30 Aligned_cols=118 Identities=17% Similarity=0.176 Sum_probs=84.5
Q ss_pred CHHHHHHHHHHHHHcCCcEEEEecCCCCCCchhHHhhhhcCCCCccccccccccccCccccccchhhHHHhhhccCccc-
Q 017718 134 DRNVVAQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLTLKNFQGLDLGKMDEANDSGLAAYVAGQIDRSL- 212 (367)
Q Consensus 134 d~~~~~~~l~ra~~~G~~ai~itvd~p~~g~r~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~- 212 (367)
+++.+.+.++++.+.||+++-+.++++.. + .+.
T Consensus 146 ~~e~~~~~a~~~~~~Gf~~iKik~g~~~~--~--------------------------------------------~~~e 179 (371)
T 2ovl_A 146 PVADLKTQADRFLAGGFRAIKMKVGRPDL--K--------------------------------------------EDVD 179 (371)
T ss_dssp CHHHHHHHHHHHHHTTCSCEEEECCCSSH--H--------------------------------------------HHHH
T ss_pred CHHHHHHHHHHHHHcCCCEEEECCCCCCH--H--------------------------------------------HHHH
Confidence 67777788888889999999887764210 0 000
Q ss_pred cHHHHHhhc--CCCEEEEec--CCHHH----HHHHHHcCCcEEEEcCCCCCCCCCccchHHHHHHHHHHhcCCCcEEEec
Q 017718 213 SWKWLQTIT--KLPILVKGV--LTAED----ARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDG 284 (367)
Q Consensus 213 ~~~~l~~~~--~~Pv~vK~v--~~~~~----a~~~~~~G~d~i~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~~~via~G 284 (367)
-.+.+|+.+ +++|.++.- .+.++ ++.+.+.|++.|-- ...+..++.+.++++.+ ++||++++
T Consensus 180 ~v~avr~a~G~d~~l~vDan~~~~~~~a~~~~~~l~~~~i~~iEq--------P~~~~d~~~~~~l~~~~--~iPI~~dE 249 (371)
T 2ovl_A 180 RVSALREHLGDSFPLMVDANMKWTVDGAIRAARALAPFDLHWIEE--------PTIPDDLVGNARIVRES--GHTIAGGE 249 (371)
T ss_dssp HHHHHHHHHCTTSCEEEECTTCSCHHHHHHHHHHHGGGCCSEEEC--------CSCTTCHHHHHHHHHHH--CSCEEECT
T ss_pred HHHHHHHHhCCCCeEEEECCCCCCHHHHHHHHHHHHhcCCCEEEC--------CCCcccHHHHHHHHhhC--CCCEEeCC
Confidence 123666666 578888754 34544 45667788887631 11234677888888877 79999999
Q ss_pred CCCCHHHHHHHHHcC-CCEEEech
Q 017718 285 GVRRGTDVFKALALG-ASGIFIGR 307 (367)
Q Consensus 285 GI~~~~dv~kal~lG-Ad~V~ig~ 307 (367)
.+.+..|+.+++..| +|.|++..
T Consensus 250 ~~~~~~~~~~~i~~~~~d~v~ik~ 273 (371)
T 2ovl_A 250 NLHTLYDFHNAVRAGSLTLPEPDV 273 (371)
T ss_dssp TCCSHHHHHHHHHHTCCSEECCCT
T ss_pred CCCCHHHHHHHHHcCCCCEEeeCc
Confidence 999999999999986 89999864
|
| >1zfj_A Inosine monophosphate dehydrogenase; IMPDH, CBS domains, oxidoreductase; HET: IMP; 1.90A {Streptococcus pyogenes} SCOP: c.1.5.1 d.37.1.1 | Back alignment and structure |
|---|
Probab=95.81 E-value=0.021 Score=57.31 Aligned_cols=246 Identities=15% Similarity=0.142 Sum_probs=130.9
Q ss_pred ccccceeecccc-CCCCCCccceeEc-CeeeccceEeCcccchhccCChhhHHHHHHHHHcCCceeecCCCCCCHHHHH-
Q 017718 42 AFSRILFRPRIL-IDVSKIDMNTTVL-GFKISMPIMIAPTAMQKMAHPEGEYATARAASAAGTIMTLSSWSTSSVEEVA- 118 (367)
Q Consensus 42 ~~~~i~l~pr~l-~~~~~vd~st~i~-g~~l~~Pi~iAPm~~~~l~~~~~e~~~a~aa~~~G~~~~vs~~~~~~~e~i~- 118 (367)
.||++.|+|... .+.+++|+++.+- ...+..||+.+||...+ +..++.+..+.|-...+.. ..+.++..
T Consensus 13 ~~~d~~~~p~~~~~~p~~v~~~t~lt~~l~~~~Piv~a~M~~vt------~~eLa~av~~~Gg~G~i~~--~~~~e~~~~ 84 (491)
T 1zfj_A 13 TFDDVLLIPAESHVLPNEVDLKTKLADNLTLNIPIITAAMDTVT------GSKMAIAIARAGGLGVIHK--NMSITEQAE 84 (491)
T ss_dssp CGGGEEECCCCCCSCGGGCCCCEEEETTEEESSSEEECCCTTTC------SHHHHHHHHHTTCEEEECC--SSCHHHHHH
T ss_pred ChhhEEeccCcCCcCccccccchhhhhcceecCceEecCchhcc------HHHHHHHHHHcCCceEEeC--CCCHHHHHH
Confidence 699999999776 3447899998875 47899999999997543 4567778888876555532 24444322
Q ss_pred ------hhCC--CceEEEEeecCCHHHHHHHHHHHHHcCCcEEEEec--C--CCCCCchhHHhhhhcCCCCccccccccc
Q 017718 119 ------STGP--GIRFFQLYVYKDRNVVAQLVRRAERAGFKAIALTV--D--TPRLGRREADIKNRFTLPPFLTLKNFQG 186 (367)
Q Consensus 119 ------~~~~--~~~~~QLy~~~d~~~~~~~l~ra~~~G~~ai~itv--d--~p~~g~r~~~~~~~~~~p~~~~~~~~~~ 186 (367)
.... .+..+-+. ......+.++...+.+...+.+.= + ..+.=...+|+.... +.......+..
T Consensus 85 ~i~~v~~~~~im~~~~~~v~---~~~tv~ea~~~m~~~~~~~~pVvd~~~~~~lvGivt~~Dl~~~~--~~~~~v~~im~ 159 (491)
T 1zfj_A 85 EVRKVKRSENGVIIDPFFLT---PEHKVSEAEELMQRYRISGVPIVETLANRKLVGIITNRDMRFIS--DYNAPISEHMT 159 (491)
T ss_dssp HHHHHHHHTTTTSSSCCCBC---SSSBHHHHHHHHHHTTCSEEEEESCTTTCBEEEEEEHHHHHHCS--CSSSBTTTSCC
T ss_pred HHHHHhhHHhcCcCCCeEEC---CCCcHHHHHHHHHHcCCCEEEEEEeCCCCEEEEEEEHHHHhhhc--cCCCcHHHHcC
Confidence 1111 11111121 112345667777777877776532 1 111001123333110 00000000000
Q ss_pred c-ccCccc-cccchhhHHHhhhcc---------Cc----cccHH----HHHh-----hcCCCEEEEecC-----CHHHHH
Q 017718 187 L-DLGKMD-EANDSGLAAYVAGQI---------DR----SLSWK----WLQT-----ITKLPILVKGVL-----TAEDAR 237 (367)
Q Consensus 187 ~-~~~~~~-~~~~~~~~~~~~~~~---------d~----~~~~~----~l~~-----~~~~Pv~vK~v~-----~~~~a~ 237 (367)
. ...... ........+.+.... +. -++.+ .+.+ ....++.+.... ..+.++
T Consensus 160 ~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVVd~~g~lvGivt~~Dil~~~~~~~~~~d~~~~~~vg~~i~~~~~~~~~a~ 239 (491)
T 1zfj_A 160 SEHLVTAAVGTDLETAERILHEHRIEKLPLVDNSGRLSGLITIKDIEKVIEFPHAAKDEFGRLLVAAAVGVTSDTFERAE 239 (491)
T ss_dssp CSCCCCEETTCCHHHHHHHHHHTTCSEEEEECTTSBEEEEEEHHHHHHHHHCTTCCBCTTSCBCCEEEECSSTTHHHHHH
T ss_pred CCCCEEECCCCCHHHHHHHHHHcCCCEEEEEcCCCcEEEEEEHHHHHHHHhccccccCcCCcEEEEEeccCchhHHHHHH
Confidence 0 000000 000000111111000 00 11222 2221 001122222221 258899
Q ss_pred HHHHcCCcEEEEcCCCCCCCCCccchHHHHHHHHHHhcCCCcEEEecCCCCHHHHHHHHHcCCCEEEec
Q 017718 238 IAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFIG 306 (367)
Q Consensus 238 ~~~~~G~d~i~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~~~via~GGI~~~~dv~kal~lGAd~V~ig 306 (367)
.+.++|+|.|+++..+|+ ....++.+.++++.++ .+|++ .|+|.+.+++.+++.+|||+|.+|
T Consensus 240 ~l~~~G~d~ivi~~a~g~----~~~~~~~i~~l~~~~p-~~pvi-~G~v~t~~~a~~~~~~Gad~I~vg 302 (491)
T 1zfj_A 240 ALFEAGADAIVIDTAHGH----SAGVLRKIAEIRAHFP-NRTLI-AGNIATAEGARALYDAGVDVVKVG 302 (491)
T ss_dssp HHHHHTCSEEEECCSCTT----CHHHHHHHHHHHHHCS-SSCEE-EEEECSHHHHHHHHHTTCSEEEEC
T ss_pred HHHHcCCCeEEEeeecCc----chhHHHHHHHHHHHCC-CCcEe-CCCccCHHHHHHHHHcCCCEEEEC
Confidence 999999999999764432 1235677788877663 68998 899999999999999999999887
|
| >2vc6_A MOSA, dihydrodipicolinate synthase; DHDPS, TIM barrel, schiff base, lyase; HET: MCL; 1.95A {Sinorhizobium meliloti} | Back alignment and structure |
|---|
Probab=95.81 E-value=0.86 Score=42.43 Aligned_cols=179 Identities=13% Similarity=0.144 Sum_probs=103.3
Q ss_pred ceEeCcccchhccCChhhHHHHHHHHHcCCceee--c---CCCCCCHHHHH-------hh-CC-CceEEEEeecCCHHHH
Q 017718 73 PIMIAPTAMQKMAHPEGEYATARAASAAGTIMTL--S---SWSTSSVEEVA-------ST-GP-GIRFFQLYVYKDRNVV 138 (367)
Q Consensus 73 Pi~iAPm~~~~l~~~~~e~~~a~aa~~~G~~~~v--s---~~~~~~~e~i~-------~~-~~-~~~~~QLy~~~d~~~~ 138 (367)
|.++.|+ -.+-.+.+.-..+.+-.-+.|+...+ | +..+.+.||-. +. .. -|.+...- ..+-+..
T Consensus 7 ~a~vTPf-~dg~iD~~~l~~lv~~li~~Gv~gl~~~GttGE~~~Ls~~Er~~v~~~~~~~~~gr~pviaGvg-~~~t~~a 84 (292)
T 2vc6_A 7 TALVTPF-ADDRIDEVALHDLVEWQIEEGSFGLVPCGTTGESPTLSKSEHEQVVEITIKTANGRVPVIAGAG-SNSTAEA 84 (292)
T ss_dssp EECCCCE-ETTEECHHHHHHHHHHHHHTTCSEEETTSGGGTGGGSCHHHHHHHHHHHHHHHTTSSCBEEECC-CSSHHHH
T ss_pred EeeecCc-CCCCcCHHHHHHHHHHHHHcCCCEEEECccccChhhCCHHHHHHHHHHHHHHhCCCCcEEEecC-CccHHHH
Confidence 4445666 33333434444666667778876543 3 33456666522 22 22 45666664 3456667
Q ss_pred HHHHHHHHHcCCcEEEEecCCCCCCchhHHhhhhcCCCCccccccccccccCccccccchhhHHHhhhccCccccHHHHH
Q 017718 139 AQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLTLKNFQGLDLGKMDEANDSGLAAYVAGQIDRSLSWKWLQ 218 (367)
Q Consensus 139 ~~~l~ra~~~G~~ai~itvd~p~~g~r~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~l~ 218 (367)
.++.+.|+++|++++.+.. |.. ...+ ..++.+ .++.+.
T Consensus 85 i~la~~A~~~Gadavlv~~--P~y-----------------~~~s-------------~~~l~~----------~f~~ia 122 (292)
T 2vc6_A 85 IAFVRHAQNAGADGVLIVS--PYY-----------------NKPT-------------QEGIYQ----------HFKAID 122 (292)
T ss_dssp HHHHHHHHHTTCSEEEEEC--CCS-----------------SCCC-------------HHHHHH----------HHHHHH
T ss_pred HHHHHHHHHcCCCEEEEcC--CCC-----------------CCCC-------------HHHHHH----------HHHHHH
Confidence 7889999999999998732 321 0000 001111 234677
Q ss_pred hhcCCCEEEEec-------CCHHHHHHHHH-cC-CcEEEEcCCCCCCCCCccchHHHHHHHHHHhcCCCcEEEecCCCCH
Q 017718 219 TITKLPILVKGV-------LTAEDARIAVQ-AG-AAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRG 289 (367)
Q Consensus 219 ~~~~~Pv~vK~v-------~~~~~a~~~~~-~G-~d~i~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~~~via~GGI~~~ 289 (367)
+.+++||++=.+ .+++...++.+ .. +-+|.-+. ..+..+.++++..++++.|+ +| +.
T Consensus 123 ~a~~lPiilYn~P~~tg~~l~~~~~~~La~~~pnIvgiK~s~----------gd~~~~~~~~~~~~~~f~v~-~G---~d 188 (292)
T 2vc6_A 123 AASTIPIIVYNIPGRSAIEIHVETLARIFEDCPNVKGVXDAT----------GNLLRPSLERMACGEDFNLL-TG---ED 188 (292)
T ss_dssp HHCSSCEEEEECHHHHSCCCCHHHHHHHHHHCTTEEEEEECS----------CCTHHHHHHHHHSCTTSEEE-ES---CG
T ss_pred HhCCCCEEEEeCccccCcCCCHHHHHHHHhhCCCEEEEecCC----------CCHHHHHHHHHHcCCCEEEE-EC---ch
Confidence 778999998653 57788777766 42 33333221 12334455555555567665 55 34
Q ss_pred HHHHHHHHcCCCEEEechHH
Q 017718 290 TDVFKALALGASGIFIGRPV 309 (367)
Q Consensus 290 ~dv~kal~lGAd~V~ig~~~ 309 (367)
..++.++++||+++.-+.+-
T Consensus 189 ~~~~~~l~~G~~G~is~~~n 208 (292)
T 2vc6_A 189 GTALGYMAHGGHGCISVTAN 208 (292)
T ss_dssp GGHHHHHHTTCCEEEESGGG
T ss_pred HHHHHHHHcCCCEEEecHHH
Confidence 45778899999999888753
|
| >1wx0_A Transaldolase; structural genomics, riken structural genomics/proteomics initiative, RSGI, transferas; 2.27A {Thermus thermophilus HB8} SCOP: c.1.10.1 | Back alignment and structure |
|---|
Probab=95.80 E-value=0.17 Score=45.51 Aligned_cols=94 Identities=21% Similarity=0.151 Sum_probs=68.6
Q ss_pred cCCCEEEEecCCHHHHHHHHHcCCcEEEEcCCCCCCCCCccchHHHHHHHHHH---hcCCCcEEEecCCCCHHHHHHHHH
Q 017718 221 TKLPILVKGVLTAEDARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKA---TQGRIPVFLDGGVRRGTDVFKALA 297 (367)
Q Consensus 221 ~~~Pv~vK~v~~~~~a~~~~~~G~d~i~vs~~gg~~~~~~~~~~~~l~~i~~~---~~~~~~via~GGI~~~~dv~kal~ 297 (367)
-++++-+-.+.+.+.|..+.++|++.|... =||-.+++.+....+.++++. .+-+..|++. +++++.++.++..
T Consensus 109 ~GI~vN~TliFS~~Qa~~aa~AGa~~iSpF--VgRidd~g~~G~~~v~~i~~~~~~~~~~t~vl~A-S~r~~~~v~~~~l 185 (223)
T 1wx0_A 109 EGIKVNMTLIFSANQALLAARAGASYVSPF--LGRVDDISWDGGELLREIVEMIQVQDLPVKVIAA-SIRHPRHVTEAAL 185 (223)
T ss_dssp TTCCEEEEEECSHHHHHHHHHTTCSEEEEB--HHHHHHTTSCHHHHHHHHHHHHHHTTCSCEEEEB-CCCSHHHHHHHHH
T ss_pred CCCcEEEEEeCCHHHHHHHHHCCCeEEEec--cchHhhcCCCHHHHHHHHHHHHHHcCCCeEEeec-ccCCHHHHHHHHH
Confidence 389999999999999999999999987763 233223333344555555443 3335566665 6999999999999
Q ss_pred cCCCEEEechHHHHHhhccC
Q 017718 298 LGASGIFIGRPVVYSLAAEG 317 (367)
Q Consensus 298 lGAd~V~ig~~~l~~l~~~G 317 (367)
+|+|.+-+.-.++..+..++
T Consensus 186 ~G~d~~Tip~~~l~~l~~h~ 205 (223)
T 1wx0_A 186 LGADIATMPHAVFKQLLKHP 205 (223)
T ss_dssp TTCSEEEECHHHHHHHTCCH
T ss_pred hCCCEEECCHHHHHHHHcCC
Confidence 99999999988888775443
|
| >3r2g_A Inosine 5'-monophosphate dehydrogenase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 1.94A {Legionella pneumophila subsp} | Back alignment and structure |
|---|
Probab=95.75 E-value=0.028 Score=54.35 Aligned_cols=68 Identities=19% Similarity=0.050 Sum_probs=52.2
Q ss_pred HHHHHHHHHcCCcEEEEcCCCCCCCCCccchHHHHHHHHHHhcCCCcEEEecCCCCHHHHHHHHHcCCCEEEec
Q 017718 233 AEDARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFIG 306 (367)
Q Consensus 233 ~~~a~~~~~~G~d~i~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~~~via~GGI~~~~dv~kal~lGAd~V~ig 306 (367)
.+.++.+.++|+|.|++....|. ....++.+..+++..+ ++||++ |+|.+.+++.++..+|||+|.+|
T Consensus 102 ~e~~~~a~~aGvdvI~id~a~G~----~~~~~e~I~~ir~~~~-~~~Vi~-G~V~T~e~A~~a~~aGaD~I~Vg 169 (361)
T 3r2g_A 102 LQRAEALRDAGADFFCVDVAHAH----AKYVGKTLKSLRQLLG-SRCIMA-GNVATYAGADYLASCGADIIKAG 169 (361)
T ss_dssp HHHHHHHHHTTCCEEEEECSCCS----SHHHHHHHHHHHHHHT-TCEEEE-EEECSHHHHHHHHHTTCSEEEEC
T ss_pred HHHHHHHHHcCCCEEEEeCCCCC----cHhHHHHHHHHHHhcC-CCeEEE-cCcCCHHHHHHHHHcCCCEEEEc
Confidence 46688999999999988532221 1234567777777653 688887 77999999999999999999985
|
| >2ehh_A DHDPS, dihydrodipicolinate synthase; structural genomics, NPPSFA, national project on protein structural and functional analyses; 1.90A {Aquifex aeolicus} | Back alignment and structure |
|---|
Probab=95.66 E-value=1.4 Score=41.03 Aligned_cols=179 Identities=16% Similarity=0.155 Sum_probs=103.6
Q ss_pred ceEeCcccchhccCChhhHHHHHHHHHcCCceee--cC---CCCCCHHHHH-------hh-CC-CceEEEEeecCCHHHH
Q 017718 73 PIMIAPTAMQKMAHPEGEYATARAASAAGTIMTL--SS---WSTSSVEEVA-------ST-GP-GIRFFQLYVYKDRNVV 138 (367)
Q Consensus 73 Pi~iAPm~~~~l~~~~~e~~~a~aa~~~G~~~~v--s~---~~~~~~e~i~-------~~-~~-~~~~~QLy~~~d~~~~ 138 (367)
|.++.|+. .+-.+.+.-..+.+-.-+.|+...+ || ..+.+.||-. +. .. -|.+...- ..+-+..
T Consensus 7 ~a~vTPf~-dg~iD~~~l~~lv~~li~~Gv~gl~~~GttGE~~~Ls~~Er~~v~~~~~~~~~grvpviaGvg-~~~t~~a 84 (294)
T 2ehh_A 7 VALITPFK-EGEVDYEALGNLIEFHVDNGTDAILVCGTTGESPTLTFEEHEKVIEFAVKRAAGRIKVIAGTG-GNATHEA 84 (294)
T ss_dssp EECCCCEE-TTEECHHHHHHHHHHHHTTTCCEEEESSTTTTGGGSCHHHHHHHHHHHHHHHTTSSEEEEECC-CSCHHHH
T ss_pred eeeecCcC-CCCcCHHHHHHHHHHHHHCCCCEEEECccccChhhCCHHHHHHHHHHHHHHhCCCCcEEEecC-CCCHHHH
Confidence 45567776 5444444444666667778876433 33 3456666522 22 22 35566654 3466667
Q ss_pred HHHHHHHHHcCCcEEEEecCCCCCCchhHHhhhhcCCCCccccccccccccCccccccchhhHHHhhhccCccccHHHHH
Q 017718 139 AQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLTLKNFQGLDLGKMDEANDSGLAAYVAGQIDRSLSWKWLQ 218 (367)
Q Consensus 139 ~~~l~ra~~~G~~ai~itvd~p~~g~r~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~l~ 218 (367)
.++.+.|+++|++++.+. .|.. ...+ ..++.+ .++.+.
T Consensus 85 i~la~~A~~~Gadavlv~--~P~y-----------------~~~s-------------~~~l~~----------~f~~va 122 (294)
T 2ehh_A 85 VHLTAHAKEVGADGALVV--VPYY-----------------NKPT-------------QRGLYE----------HFKTVA 122 (294)
T ss_dssp HHHHHHHHHTTCSEEEEE--CCCS-----------------SCCC-------------HHHHHH----------HHHHHH
T ss_pred HHHHHHHHhcCCCEEEEC--CCCC-----------------CCCC-------------HHHHHH----------HHHHHH
Confidence 788999999999999874 2331 0000 001111 234666
Q ss_pred hhcCCCEEEEec-------CCHHHHHHHH-HcC-CcEEEEcCCCCCCCCCccchHHHHHHHHHHhcCCCcEEEecCCCCH
Q 017718 219 TITKLPILVKGV-------LTAEDARIAV-QAG-AAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRG 289 (367)
Q Consensus 219 ~~~~~Pv~vK~v-------~~~~~a~~~~-~~G-~d~i~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~~~via~GGI~~~ 289 (367)
+.+++||++=.+ .+++...++. +.. +-+|--+ . ..+..+.++.+..++++.|+ +|. -
T Consensus 123 ~a~~lPiilYn~P~~tg~~l~~~~~~~La~~~pnivgiKds--~--------gd~~~~~~~~~~~~~~f~v~-~G~---d 188 (294)
T 2ehh_A 123 QEVDIPIIIYNIPSRTCVEISVDTMFKLASECENIVASKES--T--------PNMDRISEIVKRLGESFSVL-SGD---D 188 (294)
T ss_dssp HHCCSCEEEEECHHHHSCCCCHHHHHHHHHHCTTEEEEEEC--C--------SCHHHHHHHHHHHCTTSEEE-ESS---G
T ss_pred HhcCCCEEEEeCCcccCcCCCHHHHHHHHhhCCCEEEEEeC--C--------CCHHHHHHHHHhcCCCeEEE-ECc---H
Confidence 778999998764 5678877776 542 2222221 1 13444555555555566654 452 3
Q ss_pred HHHHHHHHcCCCEEEechHH
Q 017718 290 TDVFKALALGASGIFIGRPV 309 (367)
Q Consensus 290 ~dv~kal~lGAd~V~ig~~~ 309 (367)
.-++.++.+||+++.-+..-
T Consensus 189 ~~~~~~l~~G~~G~is~~an 208 (294)
T 2ehh_A 189 SLTLPMMALGAKGVISVANN 208 (294)
T ss_dssp GGHHHHHHTTCCEEEESGGG
T ss_pred HHHHHHHHCCCCEEEeCHHH
Confidence 34678899999999988753
|
| >1to3_A Putative aldolase YIHT; beta-alpha barrel, structural genomics, PSI, protein structure initiative; 2.70A {Salmonella typhimurium} SCOP: c.1.10.1 | Back alignment and structure |
|---|
Probab=95.66 E-value=0.033 Score=52.65 Aligned_cols=72 Identities=29% Similarity=0.256 Sum_probs=50.3
Q ss_pred HHHHHHHcCCcEEEEcCCCCCCCCCccchHHHHHHHHHHh-c-CCCc-EEEecCCCCHH----HHHHHHHcCCCEEEech
Q 017718 235 DARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKAT-Q-GRIP-VFLDGGVRRGT----DVFKALALGASGIFIGR 307 (367)
Q Consensus 235 ~a~~~~~~G~d~i~vs~~gg~~~~~~~~~~~~l~~i~~~~-~-~~~~-via~GGI~~~~----dv~kal~lGAd~V~ig~ 307 (367)
.++.+.+.|+|.+-+.- . .+ +...++.+.++.+.. . ..+| |++.||+ +.+ .+..++..||++|.+||
T Consensus 182 aa~~a~~lGaD~iKv~~--~--~~-~~g~~~~~~~vv~~~~~~~~~P~Vv~aGG~-~~~~~~~~~~~a~~aGa~Gv~vGR 255 (304)
T 1to3_A 182 AAKELGDSGADLYKVEM--P--LY-GKGARSDLLTASQRLNGHINMPWVILSSGV-DEKLFPRAVRVAMEAGASGFLAGR 255 (304)
T ss_dssp HHHHHTTSSCSEEEECC--G--GG-GCSCHHHHHHHHHHHHHTCCSCEEECCTTS-CTTTHHHHHHHHHHTTCCEEEESH
T ss_pred HHHHHHHcCCCEEEeCC--C--cC-CCCCHHHHHHHHHhccccCCCCeEEEecCC-CHHHHHHHHHHHHHcCCeEEEEeh
Confidence 37888899999998832 1 01 111455555665551 1 1789 9999999 553 47778889999999999
Q ss_pred HHHHH
Q 017718 308 PVVYS 312 (367)
Q Consensus 308 ~~l~~ 312 (367)
.+...
T Consensus 256 aI~q~ 260 (304)
T 1to3_A 256 AVWSS 260 (304)
T ss_dssp HHHGG
T ss_pred HHhCc
Confidence 88753
|
| >3daq_A DHDPS, dihydrodipicolinate synthase; lysine biosynthesis, amino-ACI biosynthesis, diaminopimelate biosynthesis, lyase, schiff B; 1.45A {Staphylococcus aureus} SCOP: c.1.10.0 PDB: 3di1_A 3di0_A | Back alignment and structure |
|---|
Probab=95.61 E-value=0.039 Score=51.77 Aligned_cols=91 Identities=22% Similarity=0.353 Sum_probs=57.8
Q ss_pred HHHHHHcCCcEEEEcCCCCCCCCCcc-chHHHHHHHHHHhcCCCcEEEecCCCCHHHHHH----HHHcCCCEEEechHHH
Q 017718 236 ARIAVQAGAAGIIVSNHGARQLDYVP-ATIMALEEVVKATQGRIPVFLDGGVRRGTDVFK----ALALGASGIFIGRPVV 310 (367)
Q Consensus 236 a~~~~~~G~d~i~vs~~gg~~~~~~~-~~~~~l~~i~~~~~~~~~via~GGI~~~~dv~k----al~lGAd~V~ig~~~l 310 (367)
++.+.+.|+|+|++.++.|-...-.. ...+++..+++.+.+++|||+--|-.+-.++++ +-.+|||++++-.|++
T Consensus 29 v~~li~~Gv~gl~v~GttGE~~~Lt~~Er~~v~~~~~~~~~grvpviaGvg~~~t~~ai~la~~a~~~Gadavlv~~P~y 108 (292)
T 3daq_A 29 VNFLLENNAQAIIVNGTTAESPTLTTDEKELILKTVIDLVDKRVPVIAGTGTNDTEKSIQASIQAKALGADAIMLITPYY 108 (292)
T ss_dssp HHHHHHTTCCEEEESSGGGTGGGSCHHHHHHHHHHHHHHHTTSSCEEEECCCSCHHHHHHHHHHHHHHTCSEEEEECCCS
T ss_pred HHHHHHcCCCEEEECccccccccCCHHHHHHHHHHHHHHhCCCCcEEEeCCcccHHHHHHHHHHHHHcCCCEEEECCCCC
Confidence 45677899999999765442111111 123455666666677999999656556666654 3447999999999987
Q ss_pred HHhhccChHHHHHHHHHHH
Q 017718 311 YSLAAEGEKGVRRVLEMLR 329 (367)
Q Consensus 311 ~~l~~~G~~~v~~~i~~l~ 329 (367)
+.. .++++.++++.+.
T Consensus 109 ~~~---~~~~l~~~f~~ia 124 (292)
T 3daq_A 109 NKT---NQRGLVKHFEAIA 124 (292)
T ss_dssp SCC---CHHHHHHHHHHHH
T ss_pred CCC---CHHHHHHHHHHHH
Confidence 632 3455555544443
|
| >3cpr_A Dihydrodipicolinate synthetase; (beta/alpha)8-barrel fold with A C-terminal alpha-helical segment, amino-acid biosynthesis, cytoplasm; HET: MCL; 2.20A {Corynebacterium glutamicum} | Back alignment and structure |
|---|
Probab=95.53 E-value=0.061 Score=50.69 Aligned_cols=90 Identities=14% Similarity=0.231 Sum_probs=56.4
Q ss_pred HHHHHHcCCcEEEEcCCCCCCCCCcc-chHHHHHHHHHHhcCCCcEEEecCCCCHHHHHH----HHHcCCCEEEechHHH
Q 017718 236 ARIAVQAGAAGIIVSNHGARQLDYVP-ATIMALEEVVKATQGRIPVFLDGGVRRGTDVFK----ALALGASGIFIGRPVV 310 (367)
Q Consensus 236 a~~~~~~G~d~i~vs~~gg~~~~~~~-~~~~~l~~i~~~~~~~~~via~GGI~~~~dv~k----al~lGAd~V~ig~~~l 310 (367)
++.+.+.|+|+|++.|+.|-...-.. -..+++..+++.+.+++|||+--|=.+-.++++ +-.+|||++++-.|+.
T Consensus 43 v~~li~~Gv~gl~v~GttGE~~~Ls~~Er~~v~~~~~~~~~grvpviaGvg~~st~~ai~la~~A~~~Gadavlv~~P~y 122 (304)
T 3cpr_A 43 AAYLVDKGLDSLVLAGTTGESPTTTAAEKLELLKAVREEVGDRAKLIAGVGTNNTRTSVELAEAAASAGADGLLVVTPYY 122 (304)
T ss_dssp HHHHHHTTCCEEEESSTTTTTTTSCHHHHHHHHHHHHHHHTTTSEEEEECCCSCHHHHHHHHHHHHHTTCSEEEEECCCS
T ss_pred HHHHHHcCCCEEEECccccChhhCCHHHHHHHHHHHHHHhCCCCcEEecCCCCCHHHHHHHHHHHHhcCCCEEEECCCCC
Confidence 56678899999999765442211111 133455666666677899987545445555543 3347999999999986
Q ss_pred HHhhccChHHHHHHHHHH
Q 017718 311 YSLAAEGEKGVRRVLEML 328 (367)
Q Consensus 311 ~~l~~~G~~~v~~~i~~l 328 (367)
+.. .++++.++++.+
T Consensus 123 ~~~---~~~~l~~~f~~i 137 (304)
T 3cpr_A 123 SKP---SQEGLLAHFGAI 137 (304)
T ss_dssp SCC---CHHHHHHHHHHH
T ss_pred CCC---CHHHHHHHHHHH
Confidence 532 345555444444
|
| >3tak_A DHDPS, dihydrodipicolinate synthase; TIM barrel, lysine biosynthesis, pyruvate, lyase; 1.42A {Acinetobacter baumannii} PDB: 3pud_A* 3pue_A* 3pul_A 3rk8_A 3tce_A* 3tdf_A 3u8g_A 3uqn_A 4dxv_A | Back alignment and structure |
|---|
Probab=95.44 E-value=0.049 Score=51.03 Aligned_cols=90 Identities=14% Similarity=0.303 Sum_probs=56.6
Q ss_pred HHHHHHcCCcEEEEcCCCCCCCCCcc-chHHHHHHHHHHhcCCCcEEEecCCCCHHHHHH----HHHcCCCEEEechHHH
Q 017718 236 ARIAVQAGAAGIIVSNHGARQLDYVP-ATIMALEEVVKATQGRIPVFLDGGVRRGTDVFK----ALALGASGIFIGRPVV 310 (367)
Q Consensus 236 a~~~~~~G~d~i~vs~~gg~~~~~~~-~~~~~l~~i~~~~~~~~~via~GGI~~~~dv~k----al~lGAd~V~ig~~~l 310 (367)
++.+.+.|+|+|++.++.|-...-.. -..+++..+++.+.+++|||+--|=.+-.++++ +-.+|||++++-.|++
T Consensus 28 v~~li~~Gv~gl~~~GttGE~~~Ls~~Er~~v~~~~~~~~~gr~pviaGvg~~~t~~ai~la~~a~~~Gadavlv~~P~y 107 (291)
T 3tak_A 28 VEWHIEQGTNSIVAVGTTGEASTLSMEEHTQVIKEIIRVANKRIPIIAGTGANSTREAIELTKAAKDLGADAALLVTPYY 107 (291)
T ss_dssp HHHHHHHTCCEEEESSTTTTGGGSCHHHHHHHHHHHHHHHTTSSCEEEECCCSSHHHHHHHHHHHHHHTCSEEEEECCCS
T ss_pred HHHHHHCCCCEEEECccccccccCCHHHHHHHHHHHHHHhCCCCeEEEeCCCCCHHHHHHHHHHHHhcCCCEEEEcCCCC
Confidence 35677899999999665442111111 123455566666677899998555555666554 4458999999999987
Q ss_pred HHhhccChHHHHHHHHHH
Q 017718 311 YSLAAEGEKGVRRVLEML 328 (367)
Q Consensus 311 ~~l~~~G~~~v~~~i~~l 328 (367)
+.. .++++.++++.+
T Consensus 108 ~~~---~~~~l~~~f~~i 122 (291)
T 3tak_A 108 NKP---TQEGLYQHYKAI 122 (291)
T ss_dssp SCC---CHHHHHHHHHHH
T ss_pred CCC---CHHHHHHHHHHH
Confidence 632 345554444444
|
| >1yxy_A Putative N-acetylmannosamine-6-phosphate 2-epimer; structural genomics, epimerase, PSI, structure initiative; 1.60A {Streptococcus pyogenes} SCOP: c.1.2.5 | Back alignment and structure |
|---|
Probab=95.43 E-value=0.16 Score=45.48 Aligned_cols=84 Identities=17% Similarity=0.107 Sum_probs=56.9
Q ss_pred HHHhhcCCCEEE--E-e-------c-CCHHHHHHHHHcCCcEEEEcCCCCCCCCCccchHHHHHHHHHHhcCCCcEEEec
Q 017718 216 WLQTITKLPILV--K-G-------V-LTAEDARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDG 284 (367)
Q Consensus 216 ~l~~~~~~Pv~v--K-~-------v-~~~~~a~~~~~~G~d~i~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~~~via~G 284 (367)
.+|+.+++|++- | . + .+.+.++.+.++|+|.|.++..-....+ +....+.+.++++..+ .++|+.
T Consensus 63 ~i~~~~~~p~i~~~~~~~~~~~~~i~~~~~~i~~~~~~Gad~V~l~~~~~~~~~-~~~~~~~i~~i~~~~~-~~~v~~-- 138 (234)
T 1yxy_A 63 EIQAITDLPIIGIIKKDYPPQEPFITATMTEVDQLAALNIAVIAMDCTKRDRHD-GLDIASFIRQVKEKYP-NQLLMA-- 138 (234)
T ss_dssp HHHTTCCSCEEEECBCCCTTSCCCBSCSHHHHHHHHTTTCSEEEEECCSSCCTT-CCCHHHHHHHHHHHCT-TCEEEE--
T ss_pred HHHHhCCCCEEeeEcCCCCccccccCChHHHHHHHHHcCCCEEEEcccccCCCC-CccHHHHHHHHHHhCC-CCeEEE--
Confidence 566667888741 1 1 1 2457899999999999988542211111 1234667777777653 455554
Q ss_pred CCCCHHHHHHHHHcCCCEE
Q 017718 285 GVRRGTDVFKALALGASGI 303 (367)
Q Consensus 285 GI~~~~dv~kal~lGAd~V 303 (367)
++++.+++.++..+|||.|
T Consensus 139 ~~~t~~ea~~a~~~Gad~i 157 (234)
T 1yxy_A 139 DISTFDEGLVAHQAGIDFV 157 (234)
T ss_dssp ECSSHHHHHHHHHTTCSEE
T ss_pred eCCCHHHHHHHHHcCCCEE
Confidence 6889999999999999999
|
| >3flu_A DHDPS, dihydrodipicolinate synthase; TIM barrel, beta-alpha-barrel, amino-acid biosynthesis, diaminopimelate biosynthesis; 2.00A {Neisseria meningitidis serogroup B} SCOP: c.1.10.0 | Back alignment and structure |
|---|
Probab=95.40 E-value=0.055 Score=50.81 Aligned_cols=90 Identities=18% Similarity=0.269 Sum_probs=56.3
Q ss_pred HHHHHHcCCcEEEEcCCCCCCCCCcc-chHHHHHHHHHHhcCCCcEEEecCCCCHHHHHH----HHHcCCCEEEechHHH
Q 017718 236 ARIAVQAGAAGIIVSNHGARQLDYVP-ATIMALEEVVKATQGRIPVFLDGGVRRGTDVFK----ALALGASGIFIGRPVV 310 (367)
Q Consensus 236 a~~~~~~G~d~i~vs~~gg~~~~~~~-~~~~~l~~i~~~~~~~~~via~GGI~~~~dv~k----al~lGAd~V~ig~~~l 310 (367)
++.+.+.|+|+|++.++.|-...-.. -..+++..+++.+.+++|||+--|=.+-.++++ +-.+|||++++-.|++
T Consensus 34 v~~li~~Gv~gl~~~GttGE~~~Ls~~Er~~v~~~~~~~~~grvpviaGvg~~~t~~ai~la~~a~~~Gadavlv~~P~y 113 (297)
T 3flu_A 34 IDWHIENGTDGIVAVGTTGESATLSVEEHTAVIEAVVKHVAKRVPVIAGTGANNTVEAIALSQAAEKAGADYTLSVVPYY 113 (297)
T ss_dssp HHHHHHTTCCEEEESSTTTTGGGSCHHHHHHHHHHHHHHHTTSSCEEEECCCSSHHHHHHHHHHHHHTTCSEEEEECCCS
T ss_pred HHHHHHcCCCEEEeCccccCcccCCHHHHHHHHHHHHHHhCCCCcEEEeCCCcCHHHHHHHHHHHHHcCCCEEEECCCCC
Confidence 45677899999999765442111111 123455666666777999998555455555553 3348999999999987
Q ss_pred HHhhccChHHHHHHHHHH
Q 017718 311 YSLAAEGEKGVRRVLEML 328 (367)
Q Consensus 311 ~~l~~~G~~~v~~~i~~l 328 (367)
+.. .++++.++++.+
T Consensus 114 ~~~---~~~~l~~~f~~v 128 (297)
T 3flu_A 114 NKP---SQEGIYQHFKTI 128 (297)
T ss_dssp SCC---CHHHHHHHHHHH
T ss_pred CCC---CHHHHHHHHHHH
Confidence 632 345544444443
|
| >3tsm_A IGPS, indole-3-glycerol phosphate synthase; structural genomics, ssgcid, seattle structural GE center for infectious disease, lyase; 2.15A {Brucella melitensis} SCOP: c.1.2.0 | Back alignment and structure |
|---|
Probab=95.39 E-value=0.08 Score=49.20 Aligned_cols=72 Identities=21% Similarity=0.129 Sum_probs=56.9
Q ss_pred HHHHHHHHHcCCcEEEEcCCCCCCCCCccchHHHHHHHHHHhcCCCcEEEecCCCCHHHHHHHHHcCCCEEEechHHH
Q 017718 233 AEDARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFIGRPVV 310 (367)
Q Consensus 233 ~~~a~~~~~~G~d~i~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~~~via~GGI~~~~dv~kal~lGAd~V~ig~~~l 310 (367)
.+.|+...++||++|.|-.-.+ ... ...+.|.++++.+ ++||+.-..|.+..++.++..+|||+|.++...+
T Consensus 82 ~~~A~~y~~~GA~~IsVltd~~--~f~--Gs~~~L~~ir~~v--~lPVl~Kdfi~d~~qi~ea~~~GAD~VlLi~a~L 153 (272)
T 3tsm_A 82 PALAKAYEEGGAACLSVLTDTP--SFQ--GAPEFLTAARQAC--SLPALRKDFLFDPYQVYEARSWGADCILIIMASV 153 (272)
T ss_dssp HHHHHHHHHTTCSEEEEECCST--TTC--CCHHHHHHHHHTS--SSCEEEESCCCSTHHHHHHHHTTCSEEEEETTTS
T ss_pred HHHHHHHHHCCCCEEEEecccc--ccC--CCHHHHHHHHHhc--CCCEEECCccCCHHHHHHHHHcCCCEEEEccccc
Confidence 3668999999999998843221 111 2556777787766 8999999999999999999999999999997654
|
| >1vhc_A Putative KHG/KDPG aldolase; structural genomics, unknown function; HET: MSE; 1.89A {Haemophilus influenzae} SCOP: c.1.10.1 | Back alignment and structure |
|---|
Probab=95.37 E-value=0.055 Score=48.79 Aligned_cols=114 Identities=18% Similarity=0.240 Sum_probs=76.6
Q ss_pred EeecCCHHHHHHHHHHHHHcCCcEEEEecCCCCCCchhHHhhhhcCCCCccccccccccccCccccccchhhHHHhhhcc
Q 017718 129 LYVYKDRNVVAQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLTLKNFQGLDLGKMDEANDSGLAAYVAGQI 208 (367)
Q Consensus 129 Ly~~~d~~~~~~~l~ra~~~G~~ai~itvd~p~~g~r~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 208 (367)
+....+.+...++++.+.+.|++.+-++...+.. .+
T Consensus 22 vir~~~~~~~~~~~~al~~gGv~~iel~~k~~~~--------------------------------------~~------ 57 (224)
T 1vhc_A 22 VIALDNADDILPLADTLAKNGLSVAEITFRSEAA--------------------------------------AD------ 57 (224)
T ss_dssp EECCSSGGGHHHHHHHHHHTTCCEEEEETTSTTH--------------------------------------HH------
T ss_pred EEeCCCHHHHHHHHHHHHHcCCCEEEEeccCchH--------------------------------------HH------
Confidence 3335666777788888899999998886542210 00
Q ss_pred CccccHHHHHhhcC-CCEEEEecCCHHHHHHHHHcCCcEEEEcCCCCCCCCCccchHHHHHHHHHHhcCCCcEEEecCCC
Q 017718 209 DRSLSWKWLQTITK-LPILVKGVLTAEDARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVR 287 (367)
Q Consensus 209 d~~~~~~~l~~~~~-~Pv~vK~v~~~~~a~~~~~~G~d~i~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~~~via~GGI~ 287 (367)
.++.+++.++ +-+....+.+.++++.+.++|+|+++.. + ...+++...++ . ..+++. |+.
T Consensus 58 ----~i~~l~~~~~~l~vgaGtvl~~d~~~~A~~aGAd~v~~p---~-------~d~~v~~~ar~-~--g~~~i~--Gv~ 118 (224)
T 1vhc_A 58 ----AIRLLRANRPDFLIAAGTVLTAEQVVLAKSSGADFVVTP---G-------LNPKIVKLCQD-L--NFPITP--GVN 118 (224)
T ss_dssp ----HHHHHHHHCTTCEEEEESCCSHHHHHHHHHHTCSEEECS---S-------CCHHHHHHHHH-T--TCCEEC--EEC
T ss_pred ----HHHHHHHhCcCcEEeeCcEeeHHHHHHHHHCCCCEEEEC---C-------CCHHHHHHHHH-h--CCCEEe--ccC
Confidence 1224555553 3344444567899999999999999541 1 12334444443 4 456665 499
Q ss_pred CHHHHHHHHHcCCCEEEe
Q 017718 288 RGTDVFKALALGASGIFI 305 (367)
Q Consensus 288 ~~~dv~kal~lGAd~V~i 305 (367)
|++++.+++.+|||.|.+
T Consensus 119 t~~e~~~A~~~Gad~vk~ 136 (224)
T 1vhc_A 119 NPMAIEIALEMGISAVKF 136 (224)
T ss_dssp SHHHHHHHHHTTCCEEEE
T ss_pred CHHHHHHHHHCCCCEEEE
Confidence 999999999999999998
|
| >1xky_A Dihydrodipicolinate synthase; TIM barrel, , lysine biosynthesis;spine, lyase; 1.94A {Bacillus anthracis} SCOP: c.1.10.1 PDB: 1xl9_A 3hij_A* | Back alignment and structure |
|---|
Probab=95.35 E-value=0.056 Score=50.89 Aligned_cols=89 Identities=15% Similarity=0.297 Sum_probs=54.8
Q ss_pred HHHHHHcCCcEEEEcCCCCCCCCCcc-chHHHHHHHHHHhcCCCcEEEecCCCCHHHHHH----HHHcCCCEEEechHHH
Q 017718 236 ARIAVQAGAAGIIVSNHGARQLDYVP-ATIMALEEVVKATQGRIPVFLDGGVRRGTDVFK----ALALGASGIFIGRPVV 310 (367)
Q Consensus 236 a~~~~~~G~d~i~vs~~gg~~~~~~~-~~~~~l~~i~~~~~~~~~via~GGI~~~~dv~k----al~lGAd~V~ig~~~l 310 (367)
++.+++.|+|+|++.++.|-...-.. -..+++..+++.+.+++|||+--|=.+-.++++ +-.+|||++++-.|++
T Consensus 39 v~~li~~Gv~gl~v~GtTGE~~~Ls~eEr~~v~~~~~~~~~grvpViaGvg~~~t~~ai~la~~A~~~Gadavlv~~P~y 118 (301)
T 1xky_A 39 VNYLIDNGTTAIVVGGTTGESPTLTSEEKVALYRHVVSVVDKRVPVIAGTGSNNTHASIDLTKKATEVGVDAVMLVAPYY 118 (301)
T ss_dssp HHHHHHTTCCEEEESSTTTTGGGSCHHHHHHHHHHHHHHHTTSSCEEEECCCSCHHHHHHHHHHHHHTTCSEEEEECCCS
T ss_pred HHHHHHcCCCEEEECccccChhhCCHHHHHHHHHHHHHHhCCCceEEeCCCCCCHHHHHHHHHHHHhcCCCEEEEcCCCC
Confidence 46678899999999665442111111 123455556666677899997545444455543 3347999999999986
Q ss_pred HHhhccChHHHHHHHHH
Q 017718 311 YSLAAEGEKGVRRVLEM 327 (367)
Q Consensus 311 ~~l~~~G~~~v~~~i~~ 327 (367)
+.. .++++.++++.
T Consensus 119 ~~~---s~~~l~~~f~~ 132 (301)
T 1xky_A 119 NKP---SQEGMYQHFKA 132 (301)
T ss_dssp SCC---CHHHHHHHHHH
T ss_pred CCC---CHHHHHHHHHH
Confidence 532 34544444443
|
| >1f6k_A N-acetylneuraminate lyase; beta barrel; 1.60A {Haemophilus influenzae} SCOP: c.1.10.1 PDB: 1f5z_A 1f6p_A 1f73_A* 1f74_A* 1f7b_A* | Back alignment and structure |
|---|
Probab=95.33 E-value=0.055 Score=50.72 Aligned_cols=91 Identities=11% Similarity=0.158 Sum_probs=56.8
Q ss_pred HHHHHH-cCCcEEEEcCCCCCCCCCcc-chHHHHHHHHHHhcCCCcEEEecCCCCHHHHHH----HHHcCCCEEEechHH
Q 017718 236 ARIAVQ-AGAAGIIVSNHGARQLDYVP-ATIMALEEVVKATQGRIPVFLDGGVRRGTDVFK----ALALGASGIFIGRPV 309 (367)
Q Consensus 236 a~~~~~-~G~d~i~vs~~gg~~~~~~~-~~~~~l~~i~~~~~~~~~via~GGI~~~~dv~k----al~lGAd~V~ig~~~ 309 (367)
++.+.+ .|+|+|++.|+.|-...-.. -..+++..+++.+.+++|||+--|=.+-.++++ +-.+|||++++-.|+
T Consensus 30 v~~li~~~Gv~gl~~~GttGE~~~Ls~~Er~~v~~~~~~~~~grvpviaGvg~~~t~~ai~la~~a~~~Gadavlv~~P~ 109 (293)
T 1f6k_A 30 IRHNIDKMKVDGLYVGGSTGENFMLSTEEKKEIFRIAKDEAKDQIALIAQVGSVNLKEAVELGKYATELGYDCLSAVTPF 109 (293)
T ss_dssp HHHHHHTSCCSEEEESSGGGTGGGSCHHHHHHHHHHHHHHHTTSSEEEEECCCSCHHHHHHHHHHHHHHTCSEEEEECCC
T ss_pred HHHHHhhCCCcEEEeCccccchhhCCHHHHHHHHHHHHHHhCCCCeEEEecCCCCHHHHHHHHHHHHhcCCCEEEECCCC
Confidence 456778 99999999665442111111 133455666666777899998555555555553 334799999999998
Q ss_pred HHHhhccChHHHHHHHHHHH
Q 017718 310 VYSLAAEGEKGVRRVLEMLR 329 (367)
Q Consensus 310 l~~l~~~G~~~v~~~i~~l~ 329 (367)
++.. .++++.++++.+.
T Consensus 110 y~~~---~~~~l~~~f~~va 126 (293)
T 1f6k_A 110 YYKF---SFPEIKHYYDTII 126 (293)
T ss_dssp SSCC---CHHHHHHHHHHHH
T ss_pred CCCC---CHHHHHHHHHHHH
Confidence 7532 3455555554443
|
| >3si9_A DHDPS, dihydrodipicolinate synthase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, TIM barrel; 2.10A {Bartonella henselae} | Back alignment and structure |
|---|
Probab=95.30 E-value=0.045 Score=51.95 Aligned_cols=90 Identities=14% Similarity=0.246 Sum_probs=57.0
Q ss_pred HHHHHHcCCcEEEEcCCCCCCCCCcc-chHHHHHHHHHHhcCCCcEEEecCCCCHHHHHH----HHHcCCCEEEechHHH
Q 017718 236 ARIAVQAGAAGIIVSNHGARQLDYVP-ATIMALEEVVKATQGRIPVFLDGGVRRGTDVFK----ALALGASGIFIGRPVV 310 (367)
Q Consensus 236 a~~~~~~G~d~i~vs~~gg~~~~~~~-~~~~~l~~i~~~~~~~~~via~GGI~~~~dv~k----al~lGAd~V~ig~~~l 310 (367)
++.+++.|+|+|++.|+.|-...-.. -..+++..+++.+.+++|||+--|=.+-.++++ +-.+|||++++-.|++
T Consensus 49 i~~li~~Gv~Gl~v~GtTGE~~~Ls~~Er~~v~~~~v~~~~grvpViaGvg~~st~~ai~la~~A~~~Gadavlv~~P~y 128 (315)
T 3si9_A 49 VEWQITQGINGVSPVGTTGESPTLTHEEHKRIIELCVEQVAKRVPVVAGAGSNSTSEAVELAKHAEKAGADAVLVVTPYY 128 (315)
T ss_dssp HHHHHHTTCSEEECSSTTTTGGGSCHHHHHHHHHHHHHHHTTSSCBEEECCCSSHHHHHHHHHHHHHTTCSEEEEECCCS
T ss_pred HHHHHHcCCCEEEeCccccCccccCHHHHHHHHHHHHHHhCCCCcEEEeCCCCCHHHHHHHHHHHHhcCCCEEEECCCCC
Confidence 46678999999998665442111111 123455666666777899998555556666554 4458999999999987
Q ss_pred HHhhccChHHHHHHHHHH
Q 017718 311 YSLAAEGEKGVRRVLEML 328 (367)
Q Consensus 311 ~~l~~~G~~~v~~~i~~l 328 (367)
+.. .++++.++++.+
T Consensus 129 ~~~---~~~~l~~~f~~v 143 (315)
T 3si9_A 129 NRP---NQRGLYTHFSSI 143 (315)
T ss_dssp SCC---CHHHHHHHHHHH
T ss_pred CCC---CHHHHHHHHHHH
Confidence 632 345554444443
|
| >3m47_A Orotidine 5'-phosphate decarboxylase; orotidine 5'-monophosphate decarboxylase, mutant I218A, LYAS; 1.20A {Methanothermobacter thermautotrophicusdelta H} SCOP: c.1.2.3 PDB: 3li1_A 3m5z_A 3lty_A 3ltp_A* 3g18_A* 3g1d_A* 3g1f_A* 3g1h_A* 3g1a_A* 3lv6_A* 1klz_A* 3g1y_A 3g22_A* 3g24_A* 3p5z_A* 3siz_A* 3sy5_A* 1loq_A* 1lor_A* 1kly_A* ... | Back alignment and structure |
|---|
Probab=95.30 E-value=0.027 Score=51.00 Aligned_cols=82 Identities=17% Similarity=0.160 Sum_probs=49.2
Q ss_pred HHHHHHHHcCCcEEEEcCCCCCCCCCccchHHHHHHHHHHhcCCCcEEEecCCCCH-HHHHHHHHcCCCEEEechHHHHH
Q 017718 234 EDARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRG-TDVFKALALGASGIFIGRPVVYS 312 (367)
Q Consensus 234 ~~a~~~~~~G~d~i~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~~~via~GGI~~~-~dv~kal~lGAd~V~ig~~~l~~ 312 (367)
+-++.+.+.|++|++++. ...+.+.++++..+.+.++ .++||+-. .+. +++..|||.+.+||+++.+
T Consensus 141 ~~a~~a~~~G~~GvV~~a----------t~~~e~~~ir~~~~~~~~i-v~PGI~~~g~~p-~~~~aGad~iVvGr~I~~a 208 (228)
T 3m47_A 141 EIARMGVDLGVKNYVGPS----------TRPERLSRLREIIGQDSFL-ISPGVGAQGGDP-GETLRFADAIIVGRSIYLA 208 (228)
T ss_dssp HHHHHHHHTTCCEEECCS----------SCHHHHHHHHHHHCSSSEE-EECC----------CGGGTCSEEEECHHHHTS
T ss_pred HHHHHHHHhCCcEEEECC----------CChHHHHHHHHhcCCCCEE-EecCcCcCCCCH-hHHHcCCCEEEECHHHhCC
Confidence 346788899999998743 1234556677766544655 77888643 367 8889999999999997532
Q ss_pred hhccChHHHHHHHHHHHHHHH
Q 017718 313 LAAEGEKGVRRVLEMLREEFE 333 (367)
Q Consensus 313 l~~~G~~~v~~~i~~l~~el~ 333 (367)
..+ ...++.++++++
T Consensus 209 ---~dp---~~a~~~~~~~~~ 223 (228)
T 3m47_A 209 ---DNP---AAAAAGAIESIK 223 (228)
T ss_dssp ---SCH---HHHHHHHHHHC-
T ss_pred ---CCH---HHHHHHHHHHHH
Confidence 122 234555655554
|
| >4fo4_A Inosine 5'-monophosphate dehydrogenase; structural genomics, IMPDH, IMP, mycophenolic acid, MOA; HET: IMP MOA; 2.03A {Vibrio cholerae o1 biovar el tor} PDB: 4ff0_A* 4hlv_A* 4fez_A | Back alignment and structure |
|---|
Probab=95.30 E-value=0.085 Score=51.10 Aligned_cols=85 Identities=14% Similarity=0.177 Sum_probs=59.5
Q ss_pred HHHhhcCCCEEEEec---CCHHHHHHHHHcCCcEEEEcCCCCCCCCCccchHHHHHHHHHHhcCCCcEEEecCCCCHHHH
Q 017718 216 WLQTITKLPILVKGV---LTAEDARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDV 292 (367)
Q Consensus 216 ~l~~~~~~Pv~vK~v---~~~~~a~~~~~~G~d~i~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~~~via~GGI~~~~dv 292 (367)
.+|+.-.+++.+-.. ...+.++.+.++|+|.|++....|. .....+.+.++++..+ +++|++ |.+.+.+++
T Consensus 90 ~vk~~~~l~vga~vg~~~~~~~~~~~lieaGvd~I~idta~G~----~~~~~~~I~~ik~~~p-~v~Vi~-G~v~t~e~A 163 (366)
T 4fo4_A 90 QVKISGGLRVGAAVGAAPGNEERVKALVEAGVDVLLIDSSHGH----SEGVLQRIRETRAAYP-HLEIIG-GNVATAEGA 163 (366)
T ss_dssp HHHTTTSCCCEEECCSCTTCHHHHHHHHHTTCSEEEEECSCTT----SHHHHHHHHHHHHHCT-TCEEEE-EEECSHHHH
T ss_pred HHHhcCceeEEEEeccChhHHHHHHHHHhCCCCEEEEeCCCCC----CHHHHHHHHHHHHhcC-CCceEe-eeeCCHHHH
Confidence 455433445544432 2468899999999999998533331 1234566777777653 577776 679999999
Q ss_pred HHHHHcCCCEEEec
Q 017718 293 FKALALGASGIFIG 306 (367)
Q Consensus 293 ~kal~lGAd~V~ig 306 (367)
.++..+|||+|.+|
T Consensus 164 ~~a~~aGAD~I~vG 177 (366)
T 4fo4_A 164 RALIEAGVSAVKVG 177 (366)
T ss_dssp HHHHHHTCSEEEEC
T ss_pred HHHHHcCCCEEEEe
Confidence 99999999999995
|
| >2wkj_A N-acetylneuraminate lyase; directed evolution, sialic acid mimetics, aldolase, S base, carbohydrate metabolism, N-acetylneuraminic acid LYAS; HET: KPI PYR; 1.45A {Escherichia coli} PDB: 2wnq_A 2xfw_A* 2wpb_A* 2wnz_A* 2ygy_A* 2wo5_A* 2wnn_A* 3lbm_A 3lbc_A 3lcf_A 3lcl_A 3lcg_A 3lch_A 3lci_A 1hl2_A 1fdy_A 1fdz_A 1nal_1 3lcx_A 3lcw_A | Back alignment and structure |
|---|
Probab=95.29 E-value=0.063 Score=50.58 Aligned_cols=93 Identities=15% Similarity=0.198 Sum_probs=58.2
Q ss_pred HHHHHHcCCcEEEEcCCCCCCCCCcc-chHHHHHHHHHHhcCCCcEEEecCCCCHHHHHH----HHHcCCCEEEechHHH
Q 017718 236 ARIAVQAGAAGIIVSNHGARQLDYVP-ATIMALEEVVKATQGRIPVFLDGGVRRGTDVFK----ALALGASGIFIGRPVV 310 (367)
Q Consensus 236 a~~~~~~G~d~i~vs~~gg~~~~~~~-~~~~~l~~i~~~~~~~~~via~GGI~~~~dv~k----al~lGAd~V~ig~~~l 310 (367)
++.+.+.|+|+|++.|+.|-...-.. -..+++..+++.+.+++|||+--|=.+-.++++ +-.+|||++++-.|++
T Consensus 38 v~~li~~Gv~Gl~v~GtTGE~~~Ls~eEr~~v~~~~~~~~~grvpViaGvg~~~t~~ai~la~~A~~~Gadavlv~~P~y 117 (303)
T 2wkj_A 38 VQFNIQQGIDGLYVGGSTGEAFVQSLSEREQVLEIVAEEAKGKIKLIAHVGCVSTAESQQLAASAKRYGFDAVSAVTPFY 117 (303)
T ss_dssp HHHHHHTTCSEEEESSTTTTGGGSCHHHHHHHHHHHHHHHTTTSEEEEECCCSSHHHHHHHHHHHHHHTCSEEEEECCCS
T ss_pred HHHHHHcCCCEEEECeeccChhhCCHHHHHHHHHHHHHHhCCCCcEEEecCCCCHHHHHHHHHHHHhCCCCEEEecCCCC
Confidence 46678899999999665442111111 123455666666677899998444444455543 3347999999999987
Q ss_pred HHhhccChHHHHHHHHHHHHH
Q 017718 311 YSLAAEGEKGVRRVLEMLREE 331 (367)
Q Consensus 311 ~~l~~~G~~~v~~~i~~l~~e 331 (367)
+.. .++++.++++.+.+.
T Consensus 118 ~~~---s~~~l~~~f~~va~a 135 (303)
T 2wkj_A 118 YPF---SFEEHCDHYRAIIDS 135 (303)
T ss_dssp SCC---CHHHHHHHHHHHHHH
T ss_pred CCC---CHHHHHHHHHHHHHh
Confidence 632 456666665555443
|
| >1zco_A 2-dehydro-3-deoxyphosphoheptonate aldolase; arabino-heptulosonate, synthase, shikimate, DAHP, DAH7P, DAH DAH7PS, lyase; HET: PEP; 2.25A {Pyrococcus furiosus} | Back alignment and structure |
|---|
Probab=95.25 E-value=1 Score=41.40 Aligned_cols=87 Identities=23% Similarity=0.389 Sum_probs=54.7
Q ss_pred cCCCEEEEecC--CHHHHH----HHHHcCCcEEEEcCCCCCCCC-Cc--cchHHHHHHHHHHhcCCCcEEEecCCCCHH-
Q 017718 221 TKLPILVKGVL--TAEDAR----IAVQAGAAGIIVSNHGARQLD-YV--PATIMALEEVVKATQGRIPVFLDGGVRRGT- 290 (367)
Q Consensus 221 ~~~Pv~vK~v~--~~~~a~----~~~~~G~d~i~vs~~gg~~~~-~~--~~~~~~l~~i~~~~~~~~~via~GGI~~~~- 290 (367)
+++||++|..+ ++++.. .+...|.+-+++--.|++... .. ...+..++.+++.. .+||+++..=.++.
T Consensus 129 ~~kPV~lk~G~~~t~~e~~~Av~~i~~~Gn~~i~L~~RG~~~~~~y~~~~v~L~ai~~lk~~~--~~pVi~d~sH~~g~~ 206 (262)
T 1zco_A 129 VENPVLLKRGMGNTIQELLYSAEYIMAQGNENVILCERGIRTFETATRFTLDISAVPVVKELS--HLPIIVDPSHPAGRR 206 (262)
T ss_dssp SSSCEEEECCTTCCHHHHHHHHHHHHTTTCCCEEEEECCBCCSCCSSSSBCCTTHHHHHHHHB--SSCEEECSSTTTCSG
T ss_pred cCCcEEEecCCCCCHHHHHHHHHHHHHCCCCeEEEEECCCCCCCCcChhhcCHHHHHHHHhhh--CCCEEEEcCCCCCcc
Confidence 68999999875 566644 445678765665444544331 11 12345666666654 68998865433332
Q ss_pred ----H-HHHHHHcCCCEEEechHH
Q 017718 291 ----D-VFKALALGASGIFIGRPV 309 (367)
Q Consensus 291 ----d-v~kal~lGAd~V~ig~~~ 309 (367)
. +..+.++||++++|=+-+
T Consensus 207 ~~v~~~~~aAva~Ga~Gl~iE~H~ 230 (262)
T 1zco_A 207 SLVIPLAKAAYAIGADGIMVEVHP 230 (262)
T ss_dssp GGHHHHHHHHHHTTCSEEEEEBCS
T ss_pred chHHHHHHHHHHcCCCEEEEEecC
Confidence 3 344677999999999854
|
| >3qze_A DHDPS, dihydrodipicolinate synthase; alpha beta barrel, cytoplasmic; 1.59A {Pseudomonas aeruginosa} PDB: 3puo_A* 3noe_A 3ps7_A* 3s8h_A | Back alignment and structure |
|---|
Probab=95.22 E-value=0.055 Score=51.30 Aligned_cols=90 Identities=19% Similarity=0.302 Sum_probs=56.7
Q ss_pred HHHHHHcCCcEEEEcCCCCCCCCCcc-chHHHHHHHHHHhcCCCcEEEecCCCCHHHHHH----HHHcCCCEEEechHHH
Q 017718 236 ARIAVQAGAAGIIVSNHGARQLDYVP-ATIMALEEVVKATQGRIPVFLDGGVRRGTDVFK----ALALGASGIFIGRPVV 310 (367)
Q Consensus 236 a~~~~~~G~d~i~vs~~gg~~~~~~~-~~~~~l~~i~~~~~~~~~via~GGI~~~~dv~k----al~lGAd~V~ig~~~l 310 (367)
++.+.+.|+|+|++.|+.|-...-.. -..+++..+++.+.+++|||+--|=.+-.++++ +-.+|||++++-.|+.
T Consensus 50 v~~li~~Gv~Gl~v~GtTGE~~~Ls~~Er~~v~~~~v~~~~grvpViaGvg~~st~eai~la~~A~~~Gadavlv~~P~y 129 (314)
T 3qze_A 50 VDFHLQEGTNAIVAVGTTGESATLDVEEHIQVIRRVVDQVKGRIPVIAGTGANSTREAVALTEAAKSGGADACLLVTPYY 129 (314)
T ss_dssp HHHHHHHTCCEEEESSGGGTGGGCCHHHHHHHHHHHHHHHTTSSCEEEECCCSSHHHHHHHHHHHHHTTCSEEEEECCCS
T ss_pred HHHHHHcCCCEEEECccccChhhCCHHHHHHHHHHHHHHhCCCCcEEEeCCCcCHHHHHHHHHHHHHcCCCEEEEcCCCC
Confidence 45678899999999665442111111 123455556666777899998555555666554 3348999999999987
Q ss_pred HHhhccChHHHHHHHHHH
Q 017718 311 YSLAAEGEKGVRRVLEML 328 (367)
Q Consensus 311 ~~l~~~G~~~v~~~i~~l 328 (367)
+.. .++++.++++.+
T Consensus 130 ~~~---s~~~l~~~f~~v 144 (314)
T 3qze_A 130 NKP---TQEGMYQHFRHI 144 (314)
T ss_dssp SCC---CHHHHHHHHHHH
T ss_pred CCC---CHHHHHHHHHHH
Confidence 632 345554444443
|
| >2hzg_A Mandelate racemase/muconate lactonizing enzyme/EN superfamily; structural genomics, predicted mandelate racemase, PSI; 2.02A {Rhodobacter sphaeroides} | Back alignment and structure |
|---|
Probab=95.22 E-value=1.4 Score=42.71 Aligned_cols=124 Identities=13% Similarity=0.020 Sum_probs=85.7
Q ss_pred cCCHHHHHHHHHHHHHcCCcEEEEecCCCCCCchhHHhhhhcCCCCccccccccccccCccccccchhhHHHhhhccCcc
Q 017718 132 YKDRNVVAQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLTLKNFQGLDLGKMDEANDSGLAAYVAGQIDRS 211 (367)
Q Consensus 132 ~~d~~~~~~~l~ra~~~G~~ai~itvd~p~~g~r~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~ 211 (367)
..+.+.+.+.++++.+.||+++-+.. +|+.+.-+ +.+
T Consensus 143 ~~~~~~~~~~a~~~~~~Gf~~iKik~-spvG~~~~------------------------------------------~~~ 179 (401)
T 2hzg_A 143 GDTPQETLERARAARRDGFAAVKFGW-GPIGRGTV------------------------------------------AAD 179 (401)
T ss_dssp CSSHHHHHHHHHHHHHTTCSEEEEES-TTTTSSCH------------------------------------------HHH
T ss_pred CCCHHHHHHHHHHHHHhCCCeEEEcC-CCCCCCHH------------------------------------------HHH
Confidence 45788788888888899999998875 44311000 000
Q ss_pred c-cHHHHHhhc--CCCEEEEec--C--CHHH----HHHHHHcCCcEEEEcCCCCCCCCCccchHHHHHHHHH-HhcCCCc
Q 017718 212 L-SWKWLQTIT--KLPILVKGV--L--TAED----ARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVK-ATQGRIP 279 (367)
Q Consensus 212 ~-~~~~l~~~~--~~Pv~vK~v--~--~~~~----a~~~~~~G~d~i~vs~~gg~~~~~~~~~~~~l~~i~~-~~~~~~~ 279 (367)
. -.+.+|+.+ +++|.++.- . +.++ ++.+.+.|++.|-- ...+..++.+.++++ .+ ++|
T Consensus 180 ~e~v~avr~a~G~d~~l~vDan~~~~~~~~~a~~~~~~l~~~~i~~iEq--------P~~~~d~~~~~~l~~~~~--~iP 249 (401)
T 2hzg_A 180 ADQIMAAREGLGPDGDLMVDVGQIFGEDVEAAAARLPTLDAAGVLWLEE--------PFDAGALAAHAALAGRGA--RVR 249 (401)
T ss_dssp HHHHHHHHHHHCSSSEEEEECTTTTTTCHHHHHTTHHHHHHTTCSEEEC--------CSCTTCHHHHHHHHTTCC--SSE
T ss_pred HHHHHHHHHHhCCCCeEEEECCCCCCCCHHHHHHHHHHHHhcCCCEEEC--------CCCccCHHHHHHHHhhCC--CCC
Confidence 1 123666666 578888754 4 6555 56678889887641 112346777777766 55 799
Q ss_pred EEEecCCCCHHHHHHHHHcC-CCEEEechH
Q 017718 280 VFLDGGVRRGTDVFKALALG-ASGIFIGRP 308 (367)
Q Consensus 280 via~GGI~~~~dv~kal~lG-Ad~V~ig~~ 308 (367)
|++++.+.+..++.+++..| +|.|++-..
T Consensus 250 I~~dE~~~~~~~~~~~i~~~~~d~v~ik~~ 279 (401)
T 2hzg_A 250 IAGGEAAHNFHMAQHLMDYGRIGFIQIDCG 279 (401)
T ss_dssp EEECTTCSSHHHHHHHHHHSCCSEEEECHH
T ss_pred EEecCCcCCHHHHHHHHHCCCCCEEEeCcc
Confidence 99999999999999999976 899999643
|
| >2yxg_A DHDPS, dihydrodipicolinate synthase; MJ0244, TIM beta/alpha-barrel fold, structural genomics, NPPSFA; 2.20A {Methanocaldococcus jannaschii DSM2661} | Back alignment and structure |
|---|
Probab=95.22 E-value=0.065 Score=50.08 Aligned_cols=90 Identities=18% Similarity=0.321 Sum_probs=55.4
Q ss_pred HHHHHHcCCcEEEEcCCCCCCCCCcc-chHHHHHHHHHHhcCCCcEEEecCCCCHHHHHH----HHHcCCCEEEechHHH
Q 017718 236 ARIAVQAGAAGIIVSNHGARQLDYVP-ATIMALEEVVKATQGRIPVFLDGGVRRGTDVFK----ALALGASGIFIGRPVV 310 (367)
Q Consensus 236 a~~~~~~G~d~i~vs~~gg~~~~~~~-~~~~~l~~i~~~~~~~~~via~GGI~~~~dv~k----al~lGAd~V~ig~~~l 310 (367)
++.+.+.|+|+|++.++.|-...-.. -..+++..+++.+.+++|||+--|=.+-.++++ +-.+|||++++-.|++
T Consensus 27 v~~li~~Gv~gl~~~GttGE~~~Ls~~Er~~v~~~~~~~~~gr~pviaGvg~~~t~~ai~la~~a~~~Gadavlv~~P~y 106 (289)
T 2yxg_A 27 INFLIENGVSGIVAVGTTGESPTLSHEEHKKVIEKVVDVVNGRVQVIAGAGSNCTEEAIELSVFAEDVGADAVLSITPYY 106 (289)
T ss_dssp HHHHHHTTCSEEEESSTTTTGGGSCHHHHHHHHHHHHHHHTTSSEEEEECCCSSHHHHHHHHHHHHHHTCSEEEEECCCS
T ss_pred HHHHHHCCCCEEEECccccChhhCCHHHHHHHHHHHHHHhCCCCcEEEeCCCCCHHHHHHHHHHHHhcCCCEEEECCCCC
Confidence 46678899999999665442111111 133455666666677899987544444455543 3347999999999987
Q ss_pred HHhhccChHHHHHHHHHH
Q 017718 311 YSLAAEGEKGVRRVLEML 328 (367)
Q Consensus 311 ~~l~~~G~~~v~~~i~~l 328 (367)
+.. .++++.++++.+
T Consensus 107 ~~~---s~~~l~~~f~~i 121 (289)
T 2yxg_A 107 NKP---TQEGLRKHFGKV 121 (289)
T ss_dssp SCC---CHHHHHHHHHHH
T ss_pred CCC---CHHHHHHHHHHH
Confidence 532 345544444443
|
| >3l21_A DHDPS, dihydrodipicolinate synthase; DAPA, dimer, RV2753C, lysine biosynthesis, amino-acid biosynthesis, diaminopimelate biosynthesis; HET: KPI CME; 2.10A {Mycobacterium tuberculosis} SCOP: c.1.10.1 PDB: 1xxx_A | Back alignment and structure |
|---|
Probab=95.22 E-value=0.053 Score=51.17 Aligned_cols=89 Identities=21% Similarity=0.308 Sum_probs=56.1
Q ss_pred HHHHHHcCCcEEEEcCCCCCCCCCcc-chHHHHHHHHHHhcCCCcEEEecCCCCHHHHHH----HHHcCCCEEEechHHH
Q 017718 236 ARIAVQAGAAGIIVSNHGARQLDYVP-ATIMALEEVVKATQGRIPVFLDGGVRRGTDVFK----ALALGASGIFIGRPVV 310 (367)
Q Consensus 236 a~~~~~~G~d~i~vs~~gg~~~~~~~-~~~~~l~~i~~~~~~~~~via~GGI~~~~dv~k----al~lGAd~V~ig~~~l 310 (367)
++.+.+.|+|+|++.++.|-...-.. ...+++..+++.+.+++|||+--|=.+-.++++ +-.+|||++++-.|+.
T Consensus 42 v~~li~~Gv~gi~v~GttGE~~~Lt~~Er~~v~~~~~~~~~grvpviaGvg~~~t~~ai~la~~a~~~Gadavlv~~P~y 121 (304)
T 3l21_A 42 ANHLVDQGCDGLVVSGTTGESPTTTDGEKIELLRAVLEAVGDRARVIAGAGTYDTAHSIRLAKACAAEGAHGLLVVTPYY 121 (304)
T ss_dssp HHHHHHTTCSEEEESSTTTTGGGSCHHHHHHHHHHHHHHHTTTSEEEEECCCSCHHHHHHHHHHHHHHTCSEEEEECCCS
T ss_pred HHHHHHcCCCEEEeCccccchhhCCHHHHHHHHHHHHHHhCCCCeEEEeCCCCCHHHHHHHHHHHHHcCCCEEEECCCCC
Confidence 46678899999999765442111111 133455666666777999999555555566554 3347999999999987
Q ss_pred HHhhccChHHHHHHHHH
Q 017718 311 YSLAAEGEKGVRRVLEM 327 (367)
Q Consensus 311 ~~l~~~G~~~v~~~i~~ 327 (367)
+.. .++++.++++.
T Consensus 122 ~~~---s~~~l~~~f~~ 135 (304)
T 3l21_A 122 SKP---PQRGLQAHFTA 135 (304)
T ss_dssp SCC---CHHHHHHHHHH
T ss_pred CCC---CHHHHHHHHHH
Confidence 632 34444444433
|
| >3qja_A IGPS, indole-3-glycerol phosphate synthase; structural genomics, T structural genomics consortium, TBSGC, lyase; 1.29A {Mycobacterium tuberculosis} PDB: 3t40_A* 3t44_A* 3t55_A* 3t78_A* 4fb7_A* | Back alignment and structure |
|---|
Probab=95.19 E-value=0.11 Score=48.36 Aligned_cols=70 Identities=20% Similarity=0.173 Sum_probs=55.2
Q ss_pred HHHHHHHHcCCcEEEEcCCCCCCCCCccchHHHHHHHHHHhcCCCcEEEecCCCCHHHHHHHHHcCCCEEEechHH
Q 017718 234 EDARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFIGRPV 309 (367)
Q Consensus 234 ~~a~~~~~~G~d~i~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~~~via~GGI~~~~dv~kal~lGAd~V~ig~~~ 309 (367)
+.|+...+.||++|.|-.-.+ .-....+.|.++++.+ ++||+.-+.|.+..++..+.++|||+|.++.+.
T Consensus 76 ~~A~~y~~~GA~~isvltd~~----~f~Gs~~~l~~ir~~v--~lPvl~kdfiid~~qv~~A~~~GAD~VlLi~a~ 145 (272)
T 3qja_A 76 KLAQAYQDGGARIVSVVTEQR----RFQGSLDDLDAVRASV--SIPVLRKDFVVQPYQIHEARAHGADMLLLIVAA 145 (272)
T ss_dssp HHHHHHHHTTCSEEEEECCGG----GHHHHHHHHHHHHHHC--SSCEEEESCCCSHHHHHHHHHTTCSEEEEEGGG
T ss_pred HHHHHHHHcCCCEEEEecChh----hcCCCHHHHHHHHHhC--CCCEEECccccCHHHHHHHHHcCCCEEEEeccc
Confidence 568889999999999842110 1123567788888777 899999999999999999999999999997643
|
| >3na8_A Putative dihydrodipicolinate synthetase; lyase; HET: MSE; 1.85A {Pseudomonas aeruginosa} | Back alignment and structure |
|---|
Probab=95.15 E-value=0.049 Score=51.70 Aligned_cols=90 Identities=13% Similarity=0.123 Sum_probs=56.8
Q ss_pred HHHHHHcCCcEEEEcCCCCCCCCCcc-chHHHHHHHHHHhcCCCcEEEecCCCCHHHHHH----HHHcCCCEEEechHHH
Q 017718 236 ARIAVQAGAAGIIVSNHGARQLDYVP-ATIMALEEVVKATQGRIPVFLDGGVRRGTDVFK----ALALGASGIFIGRPVV 310 (367)
Q Consensus 236 a~~~~~~G~d~i~vs~~gg~~~~~~~-~~~~~l~~i~~~~~~~~~via~GGI~~~~dv~k----al~lGAd~V~ig~~~l 310 (367)
++.+++.|+|+|++.++.|-...-.. -..+++..+++.+.+++|||+--|=.+-.++++ +-.+|||++++-.|++
T Consensus 51 v~~li~~Gv~Gi~v~GtTGE~~~Ls~~Er~~v~~~~v~~~~grvpViaGvg~~~t~~ai~la~~A~~~Gadavlv~~P~y 130 (315)
T 3na8_A 51 IERLIDGGVHAIAPLGSTGEGAYLSDPEWDEVVDFTLKTVAHRVPTIVSVSDLTTAKTVRRAQFAESLGAEAVMVLPISY 130 (315)
T ss_dssp HHHHHHTTCSEEECSSGGGTGGGSCHHHHHHHHHHHHHHHTTSSCBEEECCCSSHHHHHHHHHHHHHTTCSEEEECCCCS
T ss_pred HHHHHHcCCCEEEECccccChhhCCHHHHHHHHHHHHHHhCCCCcEEEecCCCCHHHHHHHHHHHHhcCCCEEEECCCCC
Confidence 46678999999999665442111111 133455666666677899998555455556554 3458999999999987
Q ss_pred HHhhccChHHHHHHHHHH
Q 017718 311 YSLAAEGEKGVRRVLEML 328 (367)
Q Consensus 311 ~~l~~~G~~~v~~~i~~l 328 (367)
+.. .++++.++++.+
T Consensus 131 ~~~---s~~~l~~~f~~v 145 (315)
T 3na8_A 131 WKL---NEAEVFQHYRAV 145 (315)
T ss_dssp SCC---CHHHHHHHHHHH
T ss_pred CCC---CHHHHHHHHHHH
Confidence 632 345544444443
|
| >2bdq_A Copper homeostasis protein CUTC; alpha beta protein, structural genomics, PSI, protein structure initiative; 2.30A {Streptococcus agalactiae} | Back alignment and structure |
|---|
Probab=95.15 E-value=0.45 Score=42.78 Aligned_cols=126 Identities=16% Similarity=0.196 Sum_probs=78.7
Q ss_pred eecCCHHHHHHHHHHHHHcCCcEEEEecCCCCCCchhHHhhhhcCCCCccccccccccccCccccccchhhHHHhhhccC
Q 017718 130 YVYKDRNVVAQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLTLKNFQGLDLGKMDEANDSGLAAYVAGQID 209 (367)
Q Consensus 130 y~~~d~~~~~~~l~ra~~~G~~ai~itvd~p~~g~r~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d 209 (367)
|...+-+.+.+-++.++++|++.+++.+-.+ |
T Consensus 70 Ys~~E~~~M~~Di~~~~~~GadGvV~G~Lt~------------------------------------------------d 101 (224)
T 2bdq_A 70 YNDLELRIMEEDILRAVELESDALVLGILTS------------------------------------------------N 101 (224)
T ss_dssp CCHHHHHHHHHHHHHHHHTTCSEEEECCBCT------------------------------------------------T
T ss_pred CCHHHHHHHHHHHHHHHHcCCCEEEEeeECC------------------------------------------------C
Confidence 5444567788888899999999999855332 1
Q ss_pred ccccHH---HHHh-hcCCCEEEEec------CCH-HHHHHHHHcCCcEEEEcCCCCCCCCCccchHHHHHHHHHHhcCCC
Q 017718 210 RSLSWK---WLQT-ITKLPILVKGV------LTA-EDARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRI 278 (367)
Q Consensus 210 ~~~~~~---~l~~-~~~~Pv~vK~v------~~~-~~a~~~~~~G~d~i~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~~ 278 (367)
..++++ .|.+ .-++|+.+=-. .++ +..+.+.+.|++.|-.|| +..-.....-.+.|.++.+...+++
T Consensus 102 g~iD~~~~~~Li~~a~~~~vTFHRAFD~~~~~d~~~ale~L~~lGv~rILTSG--~~~~~~a~~g~~~L~~Lv~~a~~ri 179 (224)
T 2bdq_A 102 NHIDTEAIEQLLPATQGLPLVFHMAFDVIPKSDQKKSIDQLVALGFTRILLHG--SSNGEPIIENIKHIKALVEYANNRI 179 (224)
T ss_dssp SSBCHHHHHHHHHHHTTCCEEECGGGGGSCTTTHHHHHHHHHHTTCCEEEECS--CSSCCCGGGGHHHHHHHHHHHTTSS
T ss_pred CCcCHHHHHHHHHHhCCCeEEEECchhccCCcCHHHHHHHHHHcCCCEEECCC--CCCCCcHHHHHHHHHHHHHhhCCCe
Confidence 122222 2212 22566655332 233 346788999999998754 4221123445667777766656689
Q ss_pred cEEEecCCCCHHHHHHHH-HcCCCEEEec
Q 017718 279 PVFLDGGVRRGTDVFKAL-ALGASGIFIG 306 (367)
Q Consensus 279 ~via~GGI~~~~dv~kal-~lGAd~V~ig 306 (367)
.|++-|||+. +.+.+.+ .+|++.+=..
T Consensus 180 ~Im~GgGV~~-~Ni~~l~~~tGv~e~H~s 207 (224)
T 2bdq_A 180 EIMVGGGVTA-ENYQYICQETGVKQAHGT 207 (224)
T ss_dssp EEEECSSCCT-TTHHHHHHHHTCCEEEET
T ss_pred EEEeCCCCCH-HHHHHHHHhhCCCEEccc
Confidence 8999889864 4455555 4799988754
|
| >3flu_A DHDPS, dihydrodipicolinate synthase; TIM barrel, beta-alpha-barrel, amino-acid biosynthesis, diaminopimelate biosynthesis; 2.00A {Neisseria meningitidis serogroup B} SCOP: c.1.10.0 | Back alignment and structure |
|---|
Probab=95.15 E-value=2.1 Score=39.90 Aligned_cols=180 Identities=17% Similarity=0.150 Sum_probs=103.4
Q ss_pred ceEeCcccchhccCChhhHHHHHHHHHcCCceee--c---CCCCCCHHHHH-------hh-CC-CceEEEEeecCCHHHH
Q 017718 73 PIMIAPTAMQKMAHPEGEYATARAASAAGTIMTL--S---SWSTSSVEEVA-------ST-GP-GIRFFQLYVYKDRNVV 138 (367)
Q Consensus 73 Pi~iAPm~~~~l~~~~~e~~~a~aa~~~G~~~~v--s---~~~~~~~e~i~-------~~-~~-~~~~~QLy~~~d~~~~ 138 (367)
|.++.|+.-.+-.+.+.-..+.+-.-+.|+...+ + +..+.+.+|-. +. .. -|.+...- ..+-+..
T Consensus 13 ~a~vTPf~~dg~iD~~~l~~lv~~li~~Gv~gl~~~GttGE~~~Ls~~Er~~v~~~~~~~~~grvpviaGvg-~~~t~~a 91 (297)
T 3flu_A 13 VALITPMNQDGSIHYEQLRDLIDWHIENGTDGIVAVGTTGESATLSVEEHTAVIEAVVKHVAKRVPVIAGTG-ANNTVEA 91 (297)
T ss_dssp EECCCCBCTTSCBCHHHHHHHHHHHHHTTCCEEEESSTTTTGGGSCHHHHHHHHHHHHHHHTTSSCEEEECC-CSSHHHH
T ss_pred EeeeccCCCCCCcCHHHHHHHHHHHHHcCCCEEEeCccccCcccCCHHHHHHHHHHHHHHhCCCCcEEEeCC-CcCHHHH
Confidence 4456676433323333334666666778876433 3 33455666522 21 22 35666654 4566777
Q ss_pred HHHHHHHHHcCCcEEEEecCCCCCCchhHHhhhhcCCCCccccccccccccCccccccchhhHHHhhhccCccccHHHHH
Q 017718 139 AQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLTLKNFQGLDLGKMDEANDSGLAAYVAGQIDRSLSWKWLQ 218 (367)
Q Consensus 139 ~~~l~ra~~~G~~ai~itvd~p~~g~r~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~l~ 218 (367)
.++.+.|+++|++++.+. .|.. ...+ ..++.+ .++.+.
T Consensus 92 i~la~~a~~~Gadavlv~--~P~y-----------------~~~~-------------~~~l~~----------~f~~va 129 (297)
T 3flu_A 92 IALSQAAEKAGADYTLSV--VPYY-----------------NKPS-------------QEGIYQ----------HFKTIA 129 (297)
T ss_dssp HHHHHHHHHTTCSEEEEE--CCCS-----------------SCCC-------------HHHHHH----------HHHHHH
T ss_pred HHHHHHHHHcCCCEEEEC--CCCC-----------------CCCC-------------HHHHHH----------HHHHHH
Confidence 889999999999999873 2321 0000 001111 124677
Q ss_pred hhcCCCEEEEec-------CCHHHHHHHHHcC-CcEEEEcCCCCCCCCCccchHHHHHHHHHHhcCCCcEEEecCCCCHH
Q 017718 219 TITKLPILVKGV-------LTAEDARIAVQAG-AAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGT 290 (367)
Q Consensus 219 ~~~~~Pv~vK~v-------~~~~~a~~~~~~G-~d~i~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~~~via~GGI~~~~ 290 (367)
+.+++||++=.+ .+++...++.+.. +-+|--+ ...+..+.++.+..++++.|+ +| +..
T Consensus 130 ~a~~lPiilYn~P~~tg~~l~~~~~~~La~~pnivgiKds----------sgd~~~~~~~~~~~~~~f~v~-~G---~d~ 195 (297)
T 3flu_A 130 EATSIPMIIYNVPGRTVVSMTNDTILRLAEIPNIVGVKEA----------SGNIGSNIELINRAPEGFVVL-SG---DDH 195 (297)
T ss_dssp HHCCSCEEEEECHHHHSSCCCHHHHHHHTTSTTEEEEEEC----------SCCHHHHHHHHHHSCTTCEEE-EC---CGG
T ss_pred HhCCCCEEEEECCchhccCCCHHHHHHHHcCCCEEEEEeC----------CCCHHHHHHHHHhcCCCeEEE-EC---cHH
Confidence 778999998875 5677777776432 1122211 123455556666665566664 45 234
Q ss_pred HHHHHHHcCCCEEEechHH
Q 017718 291 DVFKALALGASGIFIGRPV 309 (367)
Q Consensus 291 dv~kal~lGAd~V~ig~~~ 309 (367)
-++.++++||+++.-+..-
T Consensus 196 ~~l~~l~~G~~G~is~~an 214 (297)
T 3flu_A 196 TALPFMLCGGHGVITVAAN 214 (297)
T ss_dssp GHHHHHHTTCCEEEESGGG
T ss_pred HHHHHHhCCCCEEEechHh
Confidence 5778899999999888743
|
| >1rvk_A Isomerase/lactonizing enzyme; enolase superfamily, MR.GI-17937161, NYSGXRC, target T1522, structural genomics, PSI; 1.70A {Agrobacterium tumefaciens} SCOP: c.1.11.2 d.54.1.1 | Back alignment and structure |
|---|
Probab=95.14 E-value=0.35 Score=46.61 Aligned_cols=124 Identities=13% Similarity=0.144 Sum_probs=86.9
Q ss_pred CCHHHHHHHHHHHHHcCCcEEEEecCCCCCCchhHHhhhhcCCCCccccccccccccCccccccchhhHHHhhhccCccc
Q 017718 133 KDRNVVAQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLTLKNFQGLDLGKMDEANDSGLAAYVAGQIDRSL 212 (367)
Q Consensus 133 ~d~~~~~~~l~ra~~~G~~ai~itvd~p~~g~r~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~ 212 (367)
.+++.+.+.++++.+.|++++-+.++++..+ + .+ +...
T Consensus 148 ~~~e~~~~~a~~~~~~Gf~~iKik~g~~~~~---------~-~~--------------------------------~~~~ 185 (382)
T 1rvk_A 148 ATPEDYGRFAETLVKRGYKGIKLHTWMPPVS---------W-AP--------------------------------DVKM 185 (382)
T ss_dssp SSHHHHHHHHHHHHHHTCSEEEEECCCTTST---------T-CC--------------------------------CHHH
T ss_pred CCHHHHHHHHHHHHHCCCCEEEEcCCcCccc---------c-cc--------------------------------chHH
Confidence 4677777888888899999999988764311 0 00 0011
Q ss_pred c---HHHHHhhc--CCCEEEEec--CCHHH----HHHHHHcCCcEEEEcCCCCCCCCCccchHHHHHHHHHHhcCCCcEE
Q 017718 213 S---WKWLQTIT--KLPILVKGV--LTAED----ARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVF 281 (367)
Q Consensus 213 ~---~~~l~~~~--~~Pv~vK~v--~~~~~----a~~~~~~G~d~i~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~~~vi 281 (367)
+ .+.+|+.. +++|.+..- .+.++ ++.+.+.|++.|-- ...+..++.+.++++.+ ++||+
T Consensus 186 ~~e~v~avr~a~g~d~~l~vDan~~~~~~~a~~~~~~l~~~~i~~iE~--------P~~~~~~~~~~~l~~~~--~iPIa 255 (382)
T 1rvk_A 186 DLKACAAVREAVGPDIRLMIDAFHWYSRTDALALGRGLEKLGFDWIEE--------PMDEQSLSSYKWLSDNL--DIPVV 255 (382)
T ss_dssp HHHHHHHHHHHHCTTSEEEEECCTTCCHHHHHHHHHHHHTTTCSEEEC--------CSCTTCHHHHHHHHHHC--SSCEE
T ss_pred HHHHHHHHHHHhCCCCeEEEECCCCCCHHHHHHHHHHHHhcCCCEEeC--------CCChhhHHHHHHHHhhC--CCCEE
Confidence 1 23677766 588888754 34544 45667788887641 11234677888888776 79999
Q ss_pred EecCCCC-HHHHHHHHHcC-CCEEEechH
Q 017718 282 LDGGVRR-GTDVFKALALG-ASGIFIGRP 308 (367)
Q Consensus 282 a~GGI~~-~~dv~kal~lG-Ad~V~ig~~ 308 (367)
+++.+.+ ..++.+++..| +|.|++--.
T Consensus 256 ~dE~~~~~~~~~~~~i~~~~~d~v~ik~~ 284 (382)
T 1rvk_A 256 GPESAAGKHWHRAEWIKAGACDILRTGVN 284 (382)
T ss_dssp ECSSCSSHHHHHHHHHHTTCCSEEEECHH
T ss_pred EeCCccCcHHHHHHHHHcCCCCEEeeCch
Confidence 9999999 99999999987 899998653
|
| >1xky_A Dihydrodipicolinate synthase; TIM barrel, , lysine biosynthesis;spine, lyase; 1.94A {Bacillus anthracis} SCOP: c.1.10.1 PDB: 1xl9_A 3hij_A* | Back alignment and structure |
|---|
Probab=95.12 E-value=2.1 Score=39.91 Aligned_cols=182 Identities=18% Similarity=0.228 Sum_probs=103.3
Q ss_pred ceEeCcccchhccCChhhHHHHHHHHHcCCceee--cC---CCCCCHHHHH-------hh-CC-CceEEEEeecCCHHHH
Q 017718 73 PIMIAPTAMQKMAHPEGEYATARAASAAGTIMTL--SS---WSTSSVEEVA-------ST-GP-GIRFFQLYVYKDRNVV 138 (367)
Q Consensus 73 Pi~iAPm~~~~l~~~~~e~~~a~aa~~~G~~~~v--s~---~~~~~~e~i~-------~~-~~-~~~~~QLy~~~d~~~~ 138 (367)
|-++.|+.-.+-.+.+.-..+.+-..+.|+...+ || ..+.+.||-. +. .. -|.+...- ..+-+..
T Consensus 18 ~a~vTPf~~dg~iD~~~l~~lv~~li~~Gv~gl~v~GtTGE~~~Ls~eEr~~v~~~~~~~~~grvpViaGvg-~~~t~~a 96 (301)
T 1xky_A 18 TAMVTPFDINGNIDFAKTTKLVNYLIDNGTTAIVVGGTTGESPTLTSEEKVALYRHVVSVVDKRVPVIAGTG-SNNTHAS 96 (301)
T ss_dssp EECCCCBCTTSSBCHHHHHHHHHHHHHTTCCEEEESSTTTTGGGSCHHHHHHHHHHHHHHHTTSSCEEEECC-CSCHHHH
T ss_pred EeeECcCCCCCCcCHHHHHHHHHHHHHcCCCEEEECccccChhhCCHHHHHHHHHHHHHHhCCCceEEeCCC-CCCHHHH
Confidence 4455666432223333334666666778876443 33 3456666522 22 22 45666654 3466667
Q ss_pred HHHHHHHHHcCCcEEEEecCCCCCCchhHHhhhhcCCCCccccccccccccCccccccchhhHHHhhhccCccccHHHHH
Q 017718 139 AQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLTLKNFQGLDLGKMDEANDSGLAAYVAGQIDRSLSWKWLQ 218 (367)
Q Consensus 139 ~~~l~ra~~~G~~ai~itvd~p~~g~r~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~l~ 218 (367)
.++.+.|+++|++++.+.. |.. ...+ ..++.+ .++.+.
T Consensus 97 i~la~~A~~~Gadavlv~~--P~y-----------------~~~s-------------~~~l~~----------~f~~va 134 (301)
T 1xky_A 97 IDLTKKATEVGVDAVMLVA--PYY-----------------NKPS-------------QEGMYQ----------HFKAIA 134 (301)
T ss_dssp HHHHHHHHHTTCSEEEEEC--CCS-----------------SCCC-------------HHHHHH----------HHHHHH
T ss_pred HHHHHHHHhcCCCEEEEcC--CCC-----------------CCCC-------------HHHHHH----------HHHHHH
Confidence 7889999999999998732 321 0000 001111 123666
Q ss_pred hhcCCCEEEEec-------CCHHHHHHHHHcC-CcEEEEcCCCCCCCCCccchHHHHHHHHHHhcCCCcEEEecCCCCHH
Q 017718 219 TITKLPILVKGV-------LTAEDARIAVQAG-AAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGT 290 (367)
Q Consensus 219 ~~~~~Pv~vK~v-------~~~~~a~~~~~~G-~d~i~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~~~via~GGI~~~~ 290 (367)
+.+++||++=.+ .+++...++.+.. +-+|.-+. ..+..+.++.+..++++.| .+|. -.
T Consensus 135 ~a~~lPiilYn~P~~tg~~l~~~~~~~La~~pnIvgiKdss----------gd~~~~~~~~~~~~~~f~v-~~G~---d~ 200 (301)
T 1xky_A 135 ESTPLPVMLYNVPGRSIVQISVDTVVRLSEIENIVAIKDAG----------GDVLTMTEIIEKTADDFAV-YSGD---DG 200 (301)
T ss_dssp HTCSSCEEEEECHHHHSSCCCHHHHHHHHTSTTEEEEEECS----------SCHHHHHHHHHHSCTTCEE-EESS---GG
T ss_pred HhcCCCEEEEeCccccCCCCCHHHHHHHHcCCCEEEEEcCC----------CCHHHHHHHHHhcCCCeEE-EECc---HH
Confidence 778999998764 5678777776542 22222211 1344555666655545655 4452 34
Q ss_pred HHHHHHHcCCCEEEechHHHH
Q 017718 291 DVFKALALGASGIFIGRPVVY 311 (367)
Q Consensus 291 dv~kal~lGAd~V~ig~~~l~ 311 (367)
-++.++.+||+++.-+..-++
T Consensus 201 ~~l~~l~~G~~G~is~~an~~ 221 (301)
T 1xky_A 201 LTLPAMAVGAKGIVSVASHVI 221 (301)
T ss_dssp GHHHHHHTTCCEEEESTHHHH
T ss_pred HHHHHHHcCCCEEEcCHHHhC
Confidence 477889999999999886554
|
| >1xm3_A Thiazole biosynthesis protein THIG; structural genomics, protein structure initiative, PSI, NESG, northeast structural genomics consortium; 1.80A {Bacillus subtilis} SCOP: c.1.31.1 PDB: 1tyg_A | Back alignment and structure |
|---|
Probab=95.12 E-value=0.056 Score=49.88 Aligned_cols=37 Identities=24% Similarity=0.564 Sum_probs=31.4
Q ss_pred HHHHhhcCCCEEEEe-cCCHHHHHHHHHcCCcEEEEcC
Q 017718 215 KWLQTITKLPILVKG-VLTAEDARIAVQAGAAGIIVSN 251 (367)
Q Consensus 215 ~~l~~~~~~Pv~vK~-v~~~~~a~~~~~~G~d~i~vs~ 251 (367)
+++++..++||++.+ +.+++++..+.++|+|+++|..
T Consensus 171 ~~i~~~~~iPviv~gGI~t~eda~~~~~~GAdgViVGS 208 (264)
T 1xm3_A 171 SFIIEQAKVPVIVDAGIGSPKDAAYAMELGADGVLLNT 208 (264)
T ss_dssp HHHHHHCSSCBEEESCCCSHHHHHHHHHTTCSEEEESH
T ss_pred HHHHhcCCCCEEEEeCCCCHHHHHHHHHcCCCEEEEcH
Confidence 377777899999985 5679999999999999999943
|
| >3tak_A DHDPS, dihydrodipicolinate synthase; TIM barrel, lysine biosynthesis, pyruvate, lyase; 1.42A {Acinetobacter baumannii} PDB: 3pud_A* 3pue_A* 3pul_A 3rk8_A 3tce_A* 3tdf_A 3u8g_A 3uqn_A 4dxv_A | Back alignment and structure |
|---|
Probab=95.12 E-value=2.1 Score=39.75 Aligned_cols=181 Identities=18% Similarity=0.183 Sum_probs=103.0
Q ss_pred ceEeCcccchhccCChhhHHHHHHHHHcCCceee--cC---CCCCCHHHHH-------hh-CC-CceEEEEeecCCHHHH
Q 017718 73 PIMIAPTAMQKMAHPEGEYATARAASAAGTIMTL--SS---WSTSSVEEVA-------ST-GP-GIRFFQLYVYKDRNVV 138 (367)
Q Consensus 73 Pi~iAPm~~~~l~~~~~e~~~a~aa~~~G~~~~v--s~---~~~~~~e~i~-------~~-~~-~~~~~QLy~~~d~~~~ 138 (367)
|-++.|+.-.+-.+.+.-..+.+-.-+.|+...+ +| ..+.+.+|-. +. .. -+.+...- ..+-+..
T Consensus 7 ~a~vTPf~~dg~iD~~~l~~lv~~li~~Gv~gl~~~GttGE~~~Ls~~Er~~v~~~~~~~~~gr~pviaGvg-~~~t~~a 85 (291)
T 3tak_A 7 VAIVTPMLKDGGVDWKSLEKLVEWHIEQGTNSIVAVGTTGEASTLSMEEHTQVIKEIIRVANKRIPIIAGTG-ANSTREA 85 (291)
T ss_dssp EECCCCBCTTSCBCHHHHHHHHHHHHHHTCCEEEESSTTTTGGGSCHHHHHHHHHHHHHHHTTSSCEEEECC-CSSHHHH
T ss_pred eeeECCCCCCCCcCHHHHHHHHHHHHHCCCCEEEECccccccccCCHHHHHHHHHHHHHHhCCCCeEEEeCC-CCCHHHH
Confidence 4456676433333333334666666677876433 32 3445666532 22 22 35666654 3466777
Q ss_pred HHHHHHHHHcCCcEEEEecCCCCCCchhHHhhhhcCCCCccccccccccccCccccccchhhHHHhhhccCccccHHHHH
Q 017718 139 AQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLTLKNFQGLDLGKMDEANDSGLAAYVAGQIDRSLSWKWLQ 218 (367)
Q Consensus 139 ~~~l~ra~~~G~~ai~itvd~p~~g~r~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~l~ 218 (367)
.++.+.|+++|++++.+. .|.. ...+ ..++.+ .++.+.
T Consensus 86 i~la~~a~~~Gadavlv~--~P~y-----------------~~~~-------------~~~l~~----------~f~~ia 123 (291)
T 3tak_A 86 IELTKAAKDLGADAALLV--TPYY-----------------NKPT-------------QEGLYQ----------HYKAIA 123 (291)
T ss_dssp HHHHHHHHHHTCSEEEEE--CCCS-----------------SCCC-------------HHHHHH----------HHHHHH
T ss_pred HHHHHHHHhcCCCEEEEc--CCCC-----------------CCCC-------------HHHHHH----------HHHHHH
Confidence 788999999999999873 2321 0000 001111 234677
Q ss_pred hhcCCCEEEEec-------CCHHHHHHHHHcCCcEEEEcCCCCCCCCCccchHHHHHHHHHHhcCCCcEEEecCCCCHHH
Q 017718 219 TITKLPILVKGV-------LTAEDARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTD 291 (367)
Q Consensus 219 ~~~~~Pv~vK~v-------~~~~~a~~~~~~G~d~i~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~~~via~GGI~~~~d 291 (367)
+.+++||++=.+ .+++...++.+.. ..+-+= +. ...+..+.++.+..++++.|+ +| +..-
T Consensus 124 ~a~~lPiilYn~P~~tg~~l~~~~~~~La~~p-nivgiK-------~s-sgd~~~~~~~~~~~~~~f~v~-~G---~d~~ 190 (291)
T 3tak_A 124 EAVELPLILYNVPGRTGVDLSNDTAVRLAEIP-NIVGIK-------DA-TGDVPRGKALIDALNGKMAVY-SG---DDET 190 (291)
T ss_dssp HHCCSCEEEEECHHHHSCCCCHHHHHHHTTST-TEEEEE-------EC-SCCHHHHHHHHHHHTTSSEEE-EC---CHHH
T ss_pred HhcCCCEEEEecccccCCCCCHHHHHHHHcCC-CEEEEE-------eC-CCCHHHHHHHHHHcCCCeEEE-EC---cHHH
Confidence 778999998865 5677777776532 222121 11 123444555655555567664 45 2455
Q ss_pred HHHHHHcCCCEEEechHH
Q 017718 292 VFKALALGASGIFIGRPV 309 (367)
Q Consensus 292 v~kal~lGAd~V~ig~~~ 309 (367)
.+.++++||+++.-+..-
T Consensus 191 ~~~~l~~G~~G~is~~~n 208 (291)
T 3tak_A 191 AWELMLLGADGNISVTAN 208 (291)
T ss_dssp HHHHHHTTCCEEEESGGG
T ss_pred HHHHHHCCCCEEEechhh
Confidence 778899999999888743
|
| >1o5k_A DHDPS, dihydrodipicolinate synthase; TM1521, structural genomics, J protein structure initiative, joint center for structural G lyase; HET: MCL; 1.80A {Thermotoga maritima} SCOP: c.1.10.1 PDB: 3pb2_A 3pb0_A | Back alignment and structure |
|---|
Probab=95.11 E-value=1.6 Score=40.95 Aligned_cols=179 Identities=20% Similarity=0.218 Sum_probs=102.2
Q ss_pred ceEeCcccchhccCChhhHHHHHHHHHcCCcee--ec---CCCCCCHHHHH-------hh-CC-CceEEEEeecCCHHHH
Q 017718 73 PIMIAPTAMQKMAHPEGEYATARAASAAGTIMT--LS---SWSTSSVEEVA-------ST-GP-GIRFFQLYVYKDRNVV 138 (367)
Q Consensus 73 Pi~iAPm~~~~l~~~~~e~~~a~aa~~~G~~~~--vs---~~~~~~~e~i~-------~~-~~-~~~~~QLy~~~d~~~~ 138 (367)
|.++.|+. .+-.+.+.-..+.+-..+.|+... .| +..+.+.||-. +. .. -|.+...- ..+-+..
T Consensus 19 ~a~vTPf~-dg~iD~~~l~~lv~~li~~Gv~gl~v~GtTGE~~~Ls~eEr~~vi~~~~~~~~grvpViaGvg-~~st~~a 96 (306)
T 1o5k_A 19 TAIVTPFK-NGELDLESYERLVRYQLENGVNALIVLGTTGESPTVNEDEREKLVSRTLEIVDGKIPVIVGAG-TNSTEKT 96 (306)
T ss_dssp EECCCCEE-TTEECHHHHHHHHHHHHHTTCCEEEESSGGGTGGGCCHHHHHHHHHHHHHHHTTSSCEEEECC-CSCHHHH
T ss_pred eeeecCcC-CCCcCHHHHHHHHHHHHHcCCCEEEeCccccchhhCCHHHHHHHHHHHHHHhCCCCeEEEcCC-CccHHHH
Confidence 45567775 544444444466776777887543 23 33556766522 22 22 35666654 3466667
Q ss_pred HHHHHHHHHcCCcEEEEecCCCCCCchhHHhhhhcCCCCccccccccccccCccccccchhhHHHhhhccCccccHHHHH
Q 017718 139 AQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLTLKNFQGLDLGKMDEANDSGLAAYVAGQIDRSLSWKWLQ 218 (367)
Q Consensus 139 ~~~l~ra~~~G~~ai~itvd~p~~g~r~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~l~ 218 (367)
.++.+.|+++|++++.+. .|.. ...+ ..++.+ .++.+.
T Consensus 97 i~la~~A~~~Gadavlv~--~P~y-----------------~~~s-------------~~~l~~----------~f~~va 134 (306)
T 1o5k_A 97 LKLVKQAEKLGANGVLVV--TPYY-----------------NKPT-------------QEGLYQ----------HYKYIS 134 (306)
T ss_dssp HHHHHHHHHHTCSEEEEE--CCCS-----------------SCCC-------------HHHHHH----------HHHHHH
T ss_pred HHHHHHHHhcCCCEEEEC--CCCC-----------------CCCC-------------HHHHHH----------HHHHHH
Confidence 788999999999999874 2321 0000 001111 123666
Q ss_pred hhcCCCEEEEec-------CCHHHHHHHH-HcC-CcEEEEcCCCCCCCCCccchHHHHHHHHHHhcC---CCcEEEecCC
Q 017718 219 TITKLPILVKGV-------LTAEDARIAV-QAG-AAGIIVSNHGARQLDYVPATIMALEEVVKATQG---RIPVFLDGGV 286 (367)
Q Consensus 219 ~~~~~Pv~vK~v-------~~~~~a~~~~-~~G-~d~i~vs~~gg~~~~~~~~~~~~l~~i~~~~~~---~~~via~GGI 286 (367)
+.+++||++=.+ .+++...++. +.. +-+|--+. ..+..+.++.+..++ ++.| .+|-
T Consensus 135 ~a~~lPiilYn~P~~tg~~l~~~~~~~La~~~pnIvgiKdss----------gd~~~~~~~~~~~~~~~~~f~v-~~G~- 202 (306)
T 1o5k_A 135 ERTDLGIVVYNVPGRTGVNVLPETAARIAADLKNVVGIXEAN----------PDIDQIDRTVSLTKQARSDFMV-WSGN- 202 (306)
T ss_dssp TTCSSCEEEEECHHHHSCCCCHHHHHHHHHHCTTEEEEEECC----------CCHHHHHHHHHHHHHHCTTCEE-EESS-
T ss_pred HhCCCCEEEEeCccccCcCCCHHHHHHHHHhCCCEEEEeCCC----------CCHHHHHHHHHhcCCCCCcEEE-EECc-
Confidence 778999998764 5678777776 542 22222221 123344444444433 4555 4452
Q ss_pred CCHHHHHHHHHcCCCEEEechHH
Q 017718 287 RRGTDVFKALALGASGIFIGRPV 309 (367)
Q Consensus 287 ~~~~dv~kal~lGAd~V~ig~~~ 309 (367)
..-++.++.+||+++.-+..-
T Consensus 203 --d~~~l~~l~~G~~G~is~~an 223 (306)
T 1o5k_A 203 --DDRTFYLLCAGGDGVISVVSN 223 (306)
T ss_dssp --GGGHHHHHHHTCCEEEESGGG
T ss_pred --HHHHHHHHHCCCCEEEecHHH
Confidence 344778899999999988743
|
| >1wbh_A KHG/KDPG aldolase; lyase; 1.55A {Escherichia coli} SCOP: c.1.10.1 PDB: 2c0a_A 1wau_A 1eua_A 1eun_A 1fq0_A* 1fwr_A* | Back alignment and structure |
|---|
Probab=95.11 E-value=0.069 Score=47.78 Aligned_cols=116 Identities=15% Similarity=0.171 Sum_probs=77.6
Q ss_pred EEEeecCCHHHHHHHHHHHHHcCCcEEEEecCCCCCCchhHHhhhhcCCCCccccccccccccCccccccchhhHHHhhh
Q 017718 127 FQLYVYKDRNVVAQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLTLKNFQGLDLGKMDEANDSGLAAYVAG 206 (367)
Q Consensus 127 ~QLy~~~d~~~~~~~l~ra~~~G~~ai~itvd~p~~g~r~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 206 (367)
+-+....+.+...+.++.+.+.|++.+-++...+.. .+
T Consensus 19 i~v~r~~~~~~~~~~~~al~~gGv~~iel~~k~~~~--------------------------------------~~---- 56 (214)
T 1wbh_A 19 VPVIVVKKLEHAVPMAKALVAGGVRVLNVTLRTECA--------------------------------------VD---- 56 (214)
T ss_dssp EEEECCSSGGGHHHHHHHHHHTTCCEEEEESCSTTH--------------------------------------HH----
T ss_pred EEEEECCCHHHHHHHHHHHHHcCCCEEEEeCCChhH--------------------------------------HH----
Confidence 334445677777788888999999998887543210 00
Q ss_pred ccCccccHHHHHhhcC-CCEEEEecCCHHHHHHHHHcCCcEEEEcCCCCCCCCCccchHHHHHHHHHHhcCCCcEEEecC
Q 017718 207 QIDRSLSWKWLQTITK-LPILVKGVLTAEDARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGG 285 (367)
Q Consensus 207 ~~d~~~~~~~l~~~~~-~Pv~vK~v~~~~~a~~~~~~G~d~i~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~~~via~GG 285 (367)
.++.+++.++ +-+....+.+.++++.+.++|+|+++.. + .+.+.+ +.++.. .++++. |
T Consensus 57 ------~i~~l~~~~~~~~vgagtvi~~d~~~~A~~aGAd~v~~p---~-------~d~~v~-~~~~~~--g~~~i~--G 115 (214)
T 1wbh_A 57 ------AIRAIAKEVPEAIVGAGTVLNPQQLAEVTEAGAQFAISP---G-------LTEPLL-KAATEG--TIPLIP--G 115 (214)
T ss_dssp ------HHHHHHHHCTTSEEEEESCCSHHHHHHHHHHTCSCEEES---S-------CCHHHH-HHHHHS--SSCEEE--E
T ss_pred ------HHHHHHHHCcCCEEeeCEEEEHHHHHHHHHcCCCEEEcC---C-------CCHHHH-HHHHHh--CCCEEE--e
Confidence 1224555553 3344444577899999999999999752 1 122333 233333 577776 4
Q ss_pred CCCHHHHHHHHHcCCCEEEe
Q 017718 286 VRRGTDVFKALALGASGIFI 305 (367)
Q Consensus 286 I~~~~dv~kal~lGAd~V~i 305 (367)
+.|++++.+++.+|||.|.+
T Consensus 116 ~~t~~e~~~A~~~Gad~v~~ 135 (214)
T 1wbh_A 116 ISTVSELMLGMDYGLKEFKF 135 (214)
T ss_dssp ESSHHHHHHHHHTTCCEEEE
T ss_pred cCCHHHHHHHHHCCCCEEEE
Confidence 99999999999999999998
|
| >2ehh_A DHDPS, dihydrodipicolinate synthase; structural genomics, NPPSFA, national project on protein structural and functional analyses; 1.90A {Aquifex aeolicus} | Back alignment and structure |
|---|
Probab=95.11 E-value=0.065 Score=50.23 Aligned_cols=90 Identities=20% Similarity=0.275 Sum_probs=55.3
Q ss_pred HHHHHHcCCcEEEEcCCCCCCCCCcc-chHHHHHHHHHHhcCCCcEEEecCCCCHHHHHH----HHHcCCCEEEechHHH
Q 017718 236 ARIAVQAGAAGIIVSNHGARQLDYVP-ATIMALEEVVKATQGRIPVFLDGGVRRGTDVFK----ALALGASGIFIGRPVV 310 (367)
Q Consensus 236 a~~~~~~G~d~i~vs~~gg~~~~~~~-~~~~~l~~i~~~~~~~~~via~GGI~~~~dv~k----al~lGAd~V~ig~~~l 310 (367)
++.+.+.|+|+|++.|+.|-...-.. -..+++..+++.+.+++|||+--|=.+-.++++ +-.+|||++++-.|++
T Consensus 27 v~~li~~Gv~gl~~~GttGE~~~Ls~~Er~~v~~~~~~~~~grvpviaGvg~~~t~~ai~la~~A~~~Gadavlv~~P~y 106 (294)
T 2ehh_A 27 IEFHVDNGTDAILVCGTTGESPTLTFEEHEKVIEFAVKRAAGRIKVIAGTGGNATHEAVHLTAHAKEVGADGALVVVPYY 106 (294)
T ss_dssp HHHHHTTTCCEEEESSTTTTGGGSCHHHHHHHHHHHHHHHTTSSEEEEECCCSCHHHHHHHHHHHHHTTCSEEEEECCCS
T ss_pred HHHHHHCCCCEEEECccccChhhCCHHHHHHHHHHHHHHhCCCCcEEEecCCCCHHHHHHHHHHHHhcCCCEEEECCCCC
Confidence 46678899999999765442111111 133455666666667899998555445555543 3347999999999986
Q ss_pred HHhhccChHHHHHHHHHH
Q 017718 311 YSLAAEGEKGVRRVLEML 328 (367)
Q Consensus 311 ~~l~~~G~~~v~~~i~~l 328 (367)
+.. .++++.++++.+
T Consensus 107 ~~~---s~~~l~~~f~~v 121 (294)
T 2ehh_A 107 NKP---TQRGLYEHFKTV 121 (294)
T ss_dssp SCC---CHHHHHHHHHHH
T ss_pred CCC---CHHHHHHHHHHH
Confidence 532 344444444433
|
| >3fkr_A L-2-keto-3-deoxyarabonate dehydratase; DHDPS/NAL family, complex, pyruvate, lyase; HET: KPI; 1.80A {Azospirillum brasilense} PDB: 3fkk_A | Back alignment and structure |
|---|
Probab=95.10 E-value=0.067 Score=50.57 Aligned_cols=93 Identities=15% Similarity=0.174 Sum_probs=55.1
Q ss_pred HHHHHHcCCcEEEEcCCCCCCCCCcc-chHHHHHHHHHHhcCCCcEEEecCCCCHHHHHH----HHHcCCCEEEechHHH
Q 017718 236 ARIAVQAGAAGIIVSNHGARQLDYVP-ATIMALEEVVKATQGRIPVFLDGGVRRGTDVFK----ALALGASGIFIGRPVV 310 (367)
Q Consensus 236 a~~~~~~G~d~i~vs~~gg~~~~~~~-~~~~~l~~i~~~~~~~~~via~GGI~~~~dv~k----al~lGAd~V~ig~~~l 310 (367)
++.+++.|+|+|++.|+.|-...-.. -..+++..+++.+.+++|||+--|=.+-.++++ +-.+|||++++-.|+.
T Consensus 35 v~~li~~Gv~gl~v~GtTGE~~~Ls~~Er~~v~~~~~~~~~grvpviaGvg~~~t~~ai~la~~A~~~Gadavlv~~Pyy 114 (309)
T 3fkr_A 35 VDFMIDAGSDGLCILANFSEQFAITDDERDVLTRTILEHVAGRVPVIVTTSHYSTQVCAARSLRAQQLGAAMVMAMPPYH 114 (309)
T ss_dssp HHHHHHTTCSCEEESSGGGTGGGSCHHHHHHHHHHHHHHHTTSSCEEEECCCSSHHHHHHHHHHHHHTTCSEEEECCSCB
T ss_pred HHHHHHcCCCEEEECccccCcccCCHHHHHHHHHHHHHHhCCCCcEEEecCCchHHHHHHHHHHHHHcCCCEEEEcCCCC
Confidence 45678899999999665442111111 123455666666677999998645445555543 3347999999999975
Q ss_pred HHhhccChHHHHHHHHHH
Q 017718 311 YSLAAEGEKGVRRVLEML 328 (367)
Q Consensus 311 ~~l~~~G~~~v~~~i~~l 328 (367)
+....-.++++.++++.+
T Consensus 115 ~~~~~~s~~~l~~~f~~v 132 (309)
T 3fkr_A 115 GATFRVPEAQIFEFYARV 132 (309)
T ss_dssp TTTBCCCHHHHHHHHHHH
T ss_pred ccCCCCCHHHHHHHHHHH
Confidence 210011345554444443
|
| >2r8w_A AGR_C_1641P; APC7498, dihydrodipicolinate synthase, agrobacterium tumefac C58, structural genomics, PSI-2; HET: MSE; 1.80A {Agrobacterium tumefaciens str} | Back alignment and structure |
|---|
Probab=95.10 E-value=0.066 Score=51.17 Aligned_cols=90 Identities=13% Similarity=0.103 Sum_probs=55.2
Q ss_pred HHHHHHcCCcEEEEcCCCCCCCCCcc-chHHHHHHHHHHhcCCCcEEEecCCCCHHHHHH----HHHcCCCEEEechHHH
Q 017718 236 ARIAVQAGAAGIIVSNHGARQLDYVP-ATIMALEEVVKATQGRIPVFLDGGVRRGTDVFK----ALALGASGIFIGRPVV 310 (367)
Q Consensus 236 a~~~~~~G~d~i~vs~~gg~~~~~~~-~~~~~l~~i~~~~~~~~~via~GGI~~~~dv~k----al~lGAd~V~ig~~~l 310 (367)
++.+++.|+|+|++.|+.|-...-.. -..+++..+++.+.+++|||+--|=.+-.++++ +-.+|||+|++-.|++
T Consensus 61 v~~li~~Gv~Gl~v~GtTGE~~~Ls~eEr~~vi~~~ve~~~grvpViaGvg~~st~eai~la~~A~~~Gadavlv~~P~Y 140 (332)
T 2r8w_A 61 IARLDAAEVDSVGILGSTGIYMYLTREERRRAIEAAATILRGRRTLMAGIGALRTDEAVALAKDAEAAGADALLLAPVSY 140 (332)
T ss_dssp HHHHHHHTCSEEEESSTTTTGGGSCHHHHHHHHHHHHHHHTTSSEEEEEECCSSHHHHHHHHHHHHHHTCSEEEECCCCS
T ss_pred HHHHHHcCCCEEEECccccChhhCCHHHHHHHHHHHHHHhCCCCcEEEecCCCCHHHHHHHHHHHHhcCCCEEEECCCCC
Confidence 45678899999999765442111111 133455666666677899997444444444443 3347999999999987
Q ss_pred HHhhccChHHHHHHHHHH
Q 017718 311 YSLAAEGEKGVRRVLEML 328 (367)
Q Consensus 311 ~~l~~~G~~~v~~~i~~l 328 (367)
+.. .++++.++++.+
T Consensus 141 ~~~---s~~~l~~~f~~V 155 (332)
T 2r8w_A 141 TPL---TQEEAYHHFAAV 155 (332)
T ss_dssp SCC---CHHHHHHHHHHH
T ss_pred CCC---CHHHHHHHHHHH
Confidence 532 345555444444
|
| >1vr6_A Phospho-2-dehydro-3-deoxyheptonate aldolase; TM0343, structural genomics, joint center for STRU genomics, JCSG, protein structure initiative; 1.92A {Thermotoga maritima} SCOP: c.1.10.4 PDB: 1rzm_A* 3pg9_A* 3pg8_A* | Back alignment and structure |
|---|
Probab=95.05 E-value=0.4 Score=46.06 Aligned_cols=268 Identities=18% Similarity=0.195 Sum_probs=136.3
Q ss_pred ccccCCCCchhhH-HHhHhccccceeeccccC-------CCCCCccceeEcCeee--ccceEeCcccchhccCChhhHHH
Q 017718 24 DYYASGAEDQWTL-QENRNAFSRILFRPRILI-------DVSKIDMNTTVLGFKI--SMPIMIAPTAMQKMAHPEGEYAT 93 (367)
Q Consensus 24 ~y~~~ga~~~~t~-~~n~~~~~~i~l~pr~l~-------~~~~vd~st~i~g~~l--~~Pi~iAPm~~~~l~~~~~e~~~ 93 (367)
..+-|-.||+..+ ....+++.-+.=+-|+.. ....-++.+++.+..+ ..|++||-.+. ....+.-..+
T Consensus 48 ~~~ig~~g~~~~~~~~~~~~~~~v~~~~~i~~~~k~~sr~~~~~~~~i~i~~~~iG~~~~~vIAgpcs--~es~e~a~~~ 125 (350)
T 1vr6_A 48 RTVIGIIGDDRYVVADKFESLDCVESVVRVLKPYKLVSREFHPEDTVIDLGDVKIGNGYFTIIAGPCS--VEGREMLMET 125 (350)
T ss_dssp CEEEEEEEEESSCCHHHHHTSTTEEEEEECSCSCCTTBTTTCCSCCCEECSSCEESTTEEEEEEECSB--CCCHHHHHHH
T ss_pred eEEEEEECCcCcCCHHHhhCCccceeeccCCCChhhhhhhcCCcCCEEEECCEEECCCCeEEEEeCCC--cCCHHHHHHH
Confidence 4455666776665 344555555544444442 2334456666655444 23777775533 2223334579
Q ss_pred HHHHHHcCCceee-cCCCCCCHHHHHhhCCCceEEEEeecCCHHHHHHHHHHHHHcCCcEEEEecCCCCCCchhHHhhhh
Q 017718 94 ARAASAAGTIMTL-SSWSTSSVEEVASTGPGIRFFQLYVYKDRNVVAQLVRRAERAGFKAIALTVDTPRLGRREADIKNR 172 (367)
Q Consensus 94 a~aa~~~G~~~~v-s~~~~~~~e~i~~~~~~~~~~QLy~~~d~~~~~~~l~ra~~~G~~ai~itvd~p~~g~r~~~~~~~ 172 (367)
++.++++|..++- ..+...+ .++.||- -..+....+.+.+++.|...+. ++--+. .-+....
T Consensus 126 a~~~k~aGa~~vr~q~fKprT---------s~~~f~g---lg~egl~~l~~~~~e~Gl~~~t-e~~d~~----~~~~l~~ 188 (350)
T 1vr6_A 126 AHFLSELGVKVLRGGAYKPRT---------SPYSFQG---LGEKGLEYLREAADKYGMYVVT-EALGED----DLPKVAE 188 (350)
T ss_dssp HHHHHHTTCCEEECBSCCCCC---------STTSCCC---CTHHHHHHHHHHHHHHTCEEEE-ECSSGG----GHHHHHH
T ss_pred HHHHHHcCCCeeeeeEEeCCC---------ChHhhcC---CCHHHHHHHHHHHHHcCCcEEE-EeCCHH----HHHHHHH
Confidence 9999999988763 3333211 1122332 2345556666667778877653 221111 0011000
Q ss_pred cCCCCccccccccccccCccccccchhhHHHhhhccCccc-cHHHHHh--hcCCCEEEEecC--CHHH----HHHHHHcC
Q 017718 173 FTLPPFLTLKNFQGLDLGKMDEANDSGLAAYVAGQIDRSL-SWKWLQT--ITKLPILVKGVL--TAED----ARIAVQAG 243 (367)
Q Consensus 173 ~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~-~~~~l~~--~~~~Pv~vK~v~--~~~~----a~~~~~~G 243 (367)
+ .+- + .-+.... ++..+++ .+++||++|..+ +.++ ++.+...|
T Consensus 189 ~-vd~--------------------------l-kIgAr~~~n~~LL~~va~~~kPVilk~G~~~tl~ei~~Ave~i~~~G 240 (350)
T 1vr6_A 189 Y-ADI--------------------------I-QIGARNAQNFRLLSKAGSYNKPVLLKRGFMNTIEEFLLSAEYIANSG 240 (350)
T ss_dssp H-CSE--------------------------E-EECGGGTTCHHHHHHHHTTCSCEEEECCTTCCHHHHHHHHHHHHHTT
T ss_pred h-CCE--------------------------E-EECcccccCHHHHHHHHccCCcEEEcCCCCCCHHHHHHHHHHHHHCC
Confidence 0 000 0 0000111 2222222 368999999875 4555 44556788
Q ss_pred CcEEEEcCCCCCCCCC---ccchHHHHHHHHHHhcCCCcEEEec----CCCC--HHHHHHHHHcCCCEEEechHHHHHhh
Q 017718 244 AAGIIVSNHGARQLDY---VPATIMALEEVVKATQGRIPVFLDG----GVRR--GTDVFKALALGASGIFIGRPVVYSLA 314 (367)
Q Consensus 244 ~d~i~vs~~gg~~~~~---~~~~~~~l~~i~~~~~~~~~via~G----GI~~--~~dv~kal~lGAd~V~ig~~~l~~l~ 314 (367)
-+-+++.-+|.+.... -...+..++.+++.. .+||+++. |-+. ..=...++++||++++|=+-+--.-+
T Consensus 241 N~~viLceRG~~typ~~~~~~vdl~ai~~lk~~~--~lpVi~dssHs~G~~~~v~~~a~AAvA~GA~Gl~IE~H~~pd~a 318 (350)
T 1vr6_A 241 NTKIILCERGIRTFEKATRNTLDISAVPIIRKES--HLPILVDPSHSGGRRDLVIPLSRAAIAVGAHGIIVEVHPEPEKA 318 (350)
T ss_dssp CCCEEEEECCBCCSCCSSSSBCCTTHHHHHHHHB--SSCEEECHHHHHCSGGGHHHHHHHHHHHTCSEEEEEBCSCGGGC
T ss_pred CCeEEEEeCCCCCCCCcChhhhhHHHHHHHHHhh--CCCEEEeCCCCCcccchHHHHHHHHHHhCCCEEEEEecCCcccC
Confidence 8677775566654322 122445566666654 68998843 4332 23355678899999999885422111
Q ss_pred -ccChHHH-HHHHHHHHHHHHHHHHHhC
Q 017718 315 -AEGEKGV-RRVLEMLREEFELAMALSG 340 (367)
Q Consensus 315 -~~G~~~v-~~~i~~l~~el~~~m~~~G 340 (367)
+.|...+ -+-++.|.++++..-..+|
T Consensus 319 l~D~~~sL~p~e~~~lv~~ir~i~~alg 346 (350)
T 1vr6_A 319 LSDGKQSLDFELFKELVQEMKKLADALG 346 (350)
T ss_dssp SSCGGGCBCHHHHHHHHHHHHHHHHHHT
T ss_pred CCchhhcCCHHHHHHHHHHHHHHHHHhC
Confidence 1232110 0234455555555555555
|
| >2v9d_A YAGE; dihydrodipicolinic acid synthase, N-acetyl neuraminate lyase, NAL, lyase, DHDPS, prophage; 2.15A {Escherichia coli} PDB: 2v8z_A 3nev_A* 3n2x_A* | Back alignment and structure |
|---|
Probab=95.05 E-value=0.064 Score=51.48 Aligned_cols=89 Identities=19% Similarity=0.315 Sum_probs=55.1
Q ss_pred HHHHHHcCCcEEEEcCCCCCCCCCcc-chHHHHHHHHHHhcCCCcEEEecCCCCHHHHHH----HHHcCCCEEEechHHH
Q 017718 236 ARIAVQAGAAGIIVSNHGARQLDYVP-ATIMALEEVVKATQGRIPVFLDGGVRRGTDVFK----ALALGASGIFIGRPVV 310 (367)
Q Consensus 236 a~~~~~~G~d~i~vs~~gg~~~~~~~-~~~~~l~~i~~~~~~~~~via~GGI~~~~dv~k----al~lGAd~V~ig~~~l 310 (367)
++.+++.|+|+|++.++.|-...-.. -..+++..+++.+.+++|||+--|=.+-.++++ +-.+|||++++-.|++
T Consensus 58 v~~li~~Gv~Gl~v~GtTGE~~~Ls~eEr~~vi~~~ve~~~grvpViaGvg~~st~eai~la~~A~~~Gadavlv~~P~Y 137 (343)
T 2v9d_A 58 IDDLIKAGVDGLFFLGSGGEFSQLGAEERKAIARFAIDHVDRRVPVLIGTGGTNARETIELSQHAQQAGADGIVVINPYY 137 (343)
T ss_dssp HHHHHHTTCSCEEESSTTTTGGGSCHHHHHHHHHHHHHHHTTSSCEEEECCSSCHHHHHHHHHHHHHHTCSEEEEECCSS
T ss_pred HHHHHHcCCCEEEeCccccChhhCCHHHHHHHHHHHHHHhCCCCcEEEecCCCCHHHHHHHHHHHHhcCCCEEEECCCCC
Confidence 46678999999999665442111111 133455666666677899998555445555553 3347999999999986
Q ss_pred HHhhccChHHHHHHHHH
Q 017718 311 YSLAAEGEKGVRRVLEM 327 (367)
Q Consensus 311 ~~l~~~G~~~v~~~i~~ 327 (367)
+.. .++++.++++.
T Consensus 138 ~~~---s~~~l~~~f~~ 151 (343)
T 2v9d_A 138 WKV---SEANLIRYFEQ 151 (343)
T ss_dssp SCC---CHHHHHHHHHH
T ss_pred CCC---CHHHHHHHHHH
Confidence 532 34444444433
|
| >2rfg_A Dihydrodipicolinate synthase; beta barrel, amino-acid biosynthesis, diaminopimelate biosyn lyase, lysine biosynthesis, schiff base; 1.50A {Hahella chejuensis} | Back alignment and structure |
|---|
Probab=95.05 E-value=0.064 Score=50.37 Aligned_cols=90 Identities=17% Similarity=0.283 Sum_probs=55.6
Q ss_pred HHHHHHcCCcEEEEcCCCCCCCCCcc-chHHHHHHHHHHhcCCCcEEEecCCCCHHHHHH----HHHcCCCEEEechHHH
Q 017718 236 ARIAVQAGAAGIIVSNHGARQLDYVP-ATIMALEEVVKATQGRIPVFLDGGVRRGTDVFK----ALALGASGIFIGRPVV 310 (367)
Q Consensus 236 a~~~~~~G~d~i~vs~~gg~~~~~~~-~~~~~l~~i~~~~~~~~~via~GGI~~~~dv~k----al~lGAd~V~ig~~~l 310 (367)
++.+.+.|+|+|++.|+.|-...-.. -..+++..+++.+.+++|||+--|=.+-.++++ +-.+|||++++-.|++
T Consensus 27 v~~li~~Gv~gi~v~GttGE~~~Ls~~Er~~v~~~~~~~~~grvpviaGvg~~~t~~ai~la~~A~~~Gadavlv~~P~y 106 (297)
T 2rfg_A 27 VDWQIKHGAHGLVPVGTTGESPTLTEEEHKRVVALVAEQAQGRVPVIAGAGSNNPVEAVRYAQHAQQAGADAVLCVAGYY 106 (297)
T ss_dssp HHHHHHTTCSEEECSSGGGTGGGSCHHHHHHHHHHHHHHHTTSSCBEEECCCSSHHHHHHHHHHHHHHTCSEEEECCCTT
T ss_pred HHHHHHcCCCEEEECccccchhhCCHHHHHHHHHHHHHHhCCCCeEEEccCCCCHHHHHHHHHHHHhcCCCEEEEcCCCC
Confidence 46678899999999665442111111 133455566666677899987544444455543 3347999999999987
Q ss_pred HHhhccChHHHHHHHHHH
Q 017718 311 YSLAAEGEKGVRRVLEML 328 (367)
Q Consensus 311 ~~l~~~G~~~v~~~i~~l 328 (367)
+.. .++++.++++.+
T Consensus 107 ~~~---s~~~l~~~f~~v 121 (297)
T 2rfg_A 107 NRP---SQEGLYQHFKMV 121 (297)
T ss_dssp TCC---CHHHHHHHHHHH
T ss_pred CCC---CHHHHHHHHHHH
Confidence 632 345555554444
|
| >2ojp_A DHDPS, dihydrodipicolinate synthase; dimer, lysine biosynthe lyase; HET: KGC GOL; 1.70A {Escherichia coli} PDB: 1yxc_A 1dhp_A 1yxd_A* 2ats_A* 3du0_A* 3c0j_A* 3ubs_A* 4eou_A* 3i7q_A* 3i7r_A* 3i7s_A* 2pur_A* 1s5v_A 1s5w_A 1s5t_A 3den_A* 2a6l_A 2a6n_A 3g0s_A | Back alignment and structure |
|---|
Probab=95.04 E-value=0.062 Score=50.34 Aligned_cols=76 Identities=16% Similarity=0.220 Sum_probs=49.8
Q ss_pred HHHHHHcCCcEEEEcCCCCCCCCCcc-chHHHHHHHHHHhcCCCcEEEecCCCCHHHHHHHH----HcCCCEEEechHHH
Q 017718 236 ARIAVQAGAAGIIVSNHGARQLDYVP-ATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKAL----ALGASGIFIGRPVV 310 (367)
Q Consensus 236 a~~~~~~G~d~i~vs~~gg~~~~~~~-~~~~~l~~i~~~~~~~~~via~GGI~~~~dv~kal----~lGAd~V~ig~~~l 310 (367)
++.+.+.|+|+|++.++.|-...-.. -..+++..+++.+.+++|||+--|=.+-.++++.. .+|||++++-.|++
T Consensus 28 v~~li~~Gv~gl~~~GttGE~~~Ls~~Er~~v~~~~~~~~~gr~pviaGvg~~~t~~ai~la~~a~~~Gadavlv~~P~y 107 (292)
T 2ojp_A 28 IDYHVASGTSAIVSVGTTGESATLNHDEHADVVMMTLDLADGRIPVIAGTGANATAEAISLTQRFNDSGIVGCLTVTPYY 107 (292)
T ss_dssp HHHHHHHTCCEEEESSTTTTGGGSCHHHHHHHHHHHHHHHTTSSCEEEECCCSSHHHHHHHHHHTTTSSCSEEEEECCCS
T ss_pred HHHHHHcCCCEEEECccccchhhCCHHHHHHHHHHHHHHhCCCCcEEEecCCccHHHHHHHHHHHHhcCCCEEEECCCCC
Confidence 45678899999999765442111111 13345566666667789999755555555555433 36999999999986
Q ss_pred H
Q 017718 311 Y 311 (367)
Q Consensus 311 ~ 311 (367)
+
T Consensus 108 ~ 108 (292)
T 2ojp_A 108 N 108 (292)
T ss_dssp S
T ss_pred C
Confidence 5
|
| >3qfe_A Putative dihydrodipicolinate synthase family PROT; seattle structural genomics center for infectious disease, S coccidioides, valley fever; 2.35A {Coccidioides immitis} | Back alignment and structure |
|---|
Probab=94.94 E-value=0.087 Score=50.01 Aligned_cols=92 Identities=14% Similarity=0.234 Sum_probs=54.5
Q ss_pred HHHHHHcCCcEEEEcCCCCCCCCCcc-chHHHHHHHHHHhcCCCcEEEecCCCCHHHHHH----HHHcCCCEEEechHHH
Q 017718 236 ARIAVQAGAAGIIVSNHGARQLDYVP-ATIMALEEVVKATQGRIPVFLDGGVRRGTDVFK----ALALGASGIFIGRPVV 310 (367)
Q Consensus 236 a~~~~~~G~d~i~vs~~gg~~~~~~~-~~~~~l~~i~~~~~~~~~via~GGI~~~~dv~k----al~lGAd~V~ig~~~l 310 (367)
++.+.+.|+|+|++.++.|-...-.. -..+++..+++.+.+++|||+--|=.+-.++++ +-.+|||++++-.|++
T Consensus 38 v~~li~~Gv~gl~v~GtTGE~~~Ls~~Er~~v~~~~~~~~~grvpviaGvg~~~t~~ai~la~~a~~~Gadavlv~~P~y 117 (318)
T 3qfe_A 38 YAYLARSGLTGLVILGTNAEAFLLTREERAQLIATARKAVGPDFPIMAGVGAHSTRQVLEHINDASVAGANYVLVLPPAY 117 (318)
T ss_dssp HHHHHTTTCSEEEESSGGGTGGGSCHHHHHHHHHHHHHHHCTTSCEEEECCCSSHHHHHHHHHHHHHHTCSEEEECCCCC
T ss_pred HHHHHHcCCCEEEeCccccChhhCCHHHHHHHHHHHHHHhCCCCcEEEeCCCCCHHHHHHHHHHHHHcCCCEEEEeCCcc
Confidence 45677899999999765442111111 123455666666777999998545445555553 3347999999999976
Q ss_pred HHhhccChHHHHHHHHHH
Q 017718 311 YSLAAEGEKGVRRVLEML 328 (367)
Q Consensus 311 ~~l~~~G~~~v~~~i~~l 328 (367)
|.-- ..++++.++++.+
T Consensus 118 ~~kp-~~~~~l~~~f~~i 134 (318)
T 3qfe_A 118 FGKA-TTPPVIKSFFDDV 134 (318)
T ss_dssp ---C-CCHHHHHHHHHHH
T ss_pred cCCC-CCHHHHHHHHHHH
Confidence 6310 0244544444443
|
| >3m5v_A DHDPS, dihydrodipicolinate synthase; TIM barrel, csgid, amino-acid biosynthesis, diaminopimelate biosynthesis, lyase, lysine biosynthesis; HET: MSE; 1.80A {Campylobacter jejuni} SCOP: c.1.10.0 PDB: 3ler_A* | Back alignment and structure |
|---|
Probab=94.93 E-value=0.077 Score=49.90 Aligned_cols=90 Identities=14% Similarity=0.252 Sum_probs=56.9
Q ss_pred HHHHHHcCCcEEEEcCCCCCCCCCcc-chHHHHHHHHHHhcC-CCcEEEecCCCCHHHHHH----HHHcCCCEEEechHH
Q 017718 236 ARIAVQAGAAGIIVSNHGARQLDYVP-ATIMALEEVVKATQG-RIPVFLDGGVRRGTDVFK----ALALGASGIFIGRPV 309 (367)
Q Consensus 236 a~~~~~~G~d~i~vs~~gg~~~~~~~-~~~~~l~~i~~~~~~-~~~via~GGI~~~~dv~k----al~lGAd~V~ig~~~ 309 (367)
++.+.+.|+|+|++.++.|-...-.. -..+++..+++.+.+ ++|||+--|=.+-.++++ +-.+|||++++-.|+
T Consensus 34 v~~li~~Gv~gl~v~GttGE~~~Ls~~Er~~v~~~~~~~~~g~rvpviaGvg~~~t~~ai~la~~a~~~Gadavlv~~P~ 113 (301)
T 3m5v_A 34 IKRQIENGIDAVVPVGTTGESATLTHEEHRTCIEIAVETCKGTKVKVLAGAGSNATHEAVGLAKFAKEHGADGILSVAPY 113 (301)
T ss_dssp HHHHHHTTCCEEECSSTTTTGGGSCHHHHHHHHHHHHHHHTTSSCEEEEECCCSSHHHHHHHHHHHHHTTCSEEEEECCC
T ss_pred HHHHHHcCCCEEEECccccChhhCCHHHHHHHHHHHHHHhCCCCCeEEEeCCCCCHHHHHHHHHHHHHcCCCEEEEcCCC
Confidence 46678999999999665442111111 233456666677777 899999555555566554 334899999999998
Q ss_pred HHHhhccChHHHHHHHHHH
Q 017718 310 VYSLAAEGEKGVRRVLEML 328 (367)
Q Consensus 310 l~~l~~~G~~~v~~~i~~l 328 (367)
.+.. .++++.++++.+
T Consensus 114 y~~~---s~~~l~~~f~~v 129 (301)
T 3m5v_A 114 YNKP---TQQGLYEHYKAI 129 (301)
T ss_dssp SSCC---CHHHHHHHHHHH
T ss_pred CCCC---CHHHHHHHHHHH
Confidence 7632 344444444443
|
| >3b4u_A Dihydrodipicolinate synthase; structural genomics, PSI-2, MC protein structure initiative, midwest center for structural genomics; 1.20A {Agrobacterium tumefaciens str} | Back alignment and structure |
|---|
Probab=94.90 E-value=0.066 Score=50.22 Aligned_cols=92 Identities=15% Similarity=0.168 Sum_probs=57.0
Q ss_pred HHHHHHcCCcEEEEcCCCCCCCCCcc-chHHHHHHHHHHhcCCCcEEEecCCCCHHHHHH----HHHcCCCEEEechHHH
Q 017718 236 ARIAVQAGAAGIIVSNHGARQLDYVP-ATIMALEEVVKATQGRIPVFLDGGVRRGTDVFK----ALALGASGIFIGRPVV 310 (367)
Q Consensus 236 a~~~~~~G~d~i~vs~~gg~~~~~~~-~~~~~l~~i~~~~~~~~~via~GGI~~~~dv~k----al~lGAd~V~ig~~~l 310 (367)
++.+.+.|+|+|++.|+.|-...-.. -..+++..+++.+.+++|||+--|=.+-.++++ +-.+|||++++-.|++
T Consensus 30 v~~li~~Gv~gl~~~GttGE~~~Ls~~Er~~v~~~~~~~~~gr~pviaGvg~~~t~~ai~la~~A~~~Gadavlv~~P~y 109 (294)
T 3b4u_A 30 ARRCLSNGCDSVTLFGTTGEGCSVGSRERQAILSSFIAAGIAPSRIVTGVLVDSIEDAADQSAEALNAGARNILLAPPSY 109 (294)
T ss_dssp HHHHHHTTCSEEEESSTTTTGGGSCHHHHHHHHHHHHHTTCCGGGEEEEECCSSHHHHHHHHHHHHHTTCSEEEECCCCS
T ss_pred HHHHHHcCCCEEEECccccChhhCCHHHHHHHHHHHHHHhCCCCcEEEeCCCccHHHHHHHHHHHHhcCCCEEEEcCCcC
Confidence 46678899999999765442111111 123445555566667899987444445455543 3347999999999987
Q ss_pred HH-hhccChHHHHHHHHHHHH
Q 017718 311 YS-LAAEGEKGVRRVLEMLRE 330 (367)
Q Consensus 311 ~~-l~~~G~~~v~~~i~~l~~ 330 (367)
+. . .++++.++++.+.+
T Consensus 110 ~~~~---s~~~l~~~f~~va~ 127 (294)
T 3b4u_A 110 FKNV---SDDGLFAWFSAVFS 127 (294)
T ss_dssp SCSC---CHHHHHHHHHHHHH
T ss_pred CCCC---CHHHHHHHHHHHHH
Confidence 63 2 45666555555544
|
| >1o5k_A DHDPS, dihydrodipicolinate synthase; TM1521, structural genomics, J protein structure initiative, joint center for structural G lyase; HET: MCL; 1.80A {Thermotoga maritima} SCOP: c.1.10.1 PDB: 3pb2_A 3pb0_A | Back alignment and structure |
|---|
Probab=94.88 E-value=0.065 Score=50.55 Aligned_cols=76 Identities=21% Similarity=0.367 Sum_probs=49.6
Q ss_pred HHHHHHcCCcEEEEcCCCCCCCCCcc-chHHHHHHHHHHhcCCCcEEEecCCCCHHHHHH----HHHcCCCEEEechHHH
Q 017718 236 ARIAVQAGAAGIIVSNHGARQLDYVP-ATIMALEEVVKATQGRIPVFLDGGVRRGTDVFK----ALALGASGIFIGRPVV 310 (367)
Q Consensus 236 a~~~~~~G~d~i~vs~~gg~~~~~~~-~~~~~l~~i~~~~~~~~~via~GGI~~~~dv~k----al~lGAd~V~ig~~~l 310 (367)
++.+.+.|+|+|++.++.|-...-.. -..+++..+++.+.+++|||+--|=.+-.++++ +-.+|||++++-.|++
T Consensus 39 v~~li~~Gv~gl~v~GtTGE~~~Ls~eEr~~vi~~~~~~~~grvpViaGvg~~st~~ai~la~~A~~~Gadavlv~~P~y 118 (306)
T 1o5k_A 39 VRYQLENGVNALIVLGTTGESPTVNEDEREKLVSRTLEIVDGKIPVIVGAGTNSTEKTLKLVKQAEKLGANGVLVVTPYY 118 (306)
T ss_dssp HHHHHHTTCCEEEESSGGGTGGGCCHHHHHHHHHHHHHHHTTSSCEEEECCCSCHHHHHHHHHHHHHHTCSEEEEECCCS
T ss_pred HHHHHHcCCCEEEeCccccchhhCCHHHHHHHHHHHHHHhCCCCeEEEcCCCccHHHHHHHHHHHHhcCCCEEEECCCCC
Confidence 56678999999999665442111111 133455666666677899997545445555543 3347999999999986
Q ss_pred H
Q 017718 311 Y 311 (367)
Q Consensus 311 ~ 311 (367)
+
T Consensus 119 ~ 119 (306)
T 1o5k_A 119 N 119 (306)
T ss_dssp S
T ss_pred C
Confidence 5
|
| >2vc6_A MOSA, dihydrodipicolinate synthase; DHDPS, TIM barrel, schiff base, lyase; HET: MCL; 1.95A {Sinorhizobium meliloti} | Back alignment and structure |
|---|
Probab=94.85 E-value=0.059 Score=50.48 Aligned_cols=90 Identities=18% Similarity=0.351 Sum_probs=54.5
Q ss_pred HHHHHHcCCcEEEEcCCCCCCCCCcc-chHHHHHHHHHHhcCCCcEEEecCCCCHHHHHH----HHHcCCCEEEechHHH
Q 017718 236 ARIAVQAGAAGIIVSNHGARQLDYVP-ATIMALEEVVKATQGRIPVFLDGGVRRGTDVFK----ALALGASGIFIGRPVV 310 (367)
Q Consensus 236 a~~~~~~G~d~i~vs~~gg~~~~~~~-~~~~~l~~i~~~~~~~~~via~GGI~~~~dv~k----al~lGAd~V~ig~~~l 310 (367)
++.+.+.|+|+|++.++.|-...-.. -..+++..+++.+.+++|||+--|=.+-.++++ +-.+|||++++-.|++
T Consensus 27 v~~li~~Gv~gl~~~GttGE~~~Ls~~Er~~v~~~~~~~~~gr~pviaGvg~~~t~~ai~la~~A~~~Gadavlv~~P~y 106 (292)
T 2vc6_A 27 VEWQIEEGSFGLVPCGTTGESPTLSKSEHEQVVEITIKTANGRVPVIAGAGSNSTAEAIAFVRHAQNAGADGVLIVSPYY 106 (292)
T ss_dssp HHHHHHTTCSEEETTSGGGTGGGSCHHHHHHHHHHHHHHHTTSSCBEEECCCSSHHHHHHHHHHHHHTTCSEEEEECCCS
T ss_pred HHHHHHcCCCEEEECccccChhhCCHHHHHHHHHHHHHHhCCCCcEEEecCCccHHHHHHHHHHHHHcCCCEEEEcCCCC
Confidence 56678999999998665442111111 133455666666667899987444444455543 3347999999999986
Q ss_pred HHhhccChHHHHHHHHHH
Q 017718 311 YSLAAEGEKGVRRVLEML 328 (367)
Q Consensus 311 ~~l~~~G~~~v~~~i~~l 328 (367)
+.. .++++.++++.+
T Consensus 107 ~~~---s~~~l~~~f~~i 121 (292)
T 2vc6_A 107 NKP---TQEGIYQHFKAI 121 (292)
T ss_dssp SCC---CHHHHHHHHHHH
T ss_pred CCC---CHHHHHHHHHHH
Confidence 531 344444444433
|
| >4af0_A Inosine-5'-monophosphate dehydrogenase; oxidoreductase, GTP biosynthesis, drug resistance; HET: MOA IMP; 2.20A {Cryptococcus neoformans} PDB: 4af0_B* | Back alignment and structure |
|---|
Probab=94.84 E-value=0.075 Score=53.76 Aligned_cols=245 Identities=16% Similarity=0.204 Sum_probs=111.6
Q ss_pred ccccceeecccc-CCCCCCccceeE-cCeeeccceEeCcccchhccCChhhHHHHHHHHHcCCceeecCCCCCCHHHHHh
Q 017718 42 AFSRILFRPRIL-IDVSKIDMNTTV-LGFKISMPIMIAPTAMQKMAHPEGEYATARAASAAGTIMTLSSWSTSSVEEVAS 119 (367)
Q Consensus 42 ~~~~i~l~pr~l-~~~~~vd~st~i-~g~~l~~Pi~iAPm~~~~l~~~~~e~~~a~aa~~~G~~~~vs~~~~~~~e~i~~ 119 (367)
-||++.|+|..- ...++||++|.+ -+.+++.||+-|||--.+ |..+|.+.++.|-..++. .++++|+.++
T Consensus 61 TfDDVlLvP~~s~v~p~~Vdl~t~lt~~i~L~iPlvSA~MDTVT------e~~MAIamAr~GGiGvIH--~n~sie~Qa~ 132 (556)
T 4af0_A 61 TYNDFLVLPGHINFPASDVSLQSKATKNIVLNTPFLSSPMDTVT------EDRMAIALALHGGLGIIH--HNCSAEEQAA 132 (556)
T ss_dssp CGGGEEECCCCCCSCGGGCCCCEEEETTEEESSCEEECCCTTTC------SHHHHHHHHHTTCEEEEC--CSSCHHHHHH
T ss_pred ChhhEEEccCCCCCCcccceeeeeccCCcEeCCCEEecCccccc------CHHHHHHHHHCCCeEEEc--CCCCHHHHHH
Confidence 699999999654 234689999999 579999999999995543 789999999999888884 4566776432
Q ss_pred h------CCCceEEE--EeecCCHHHHHHHHHHHHHcCCcEEEEecCCCC----CC-chhHHhhhhcC-CC--Ccccccc
Q 017718 120 T------GPGIRFFQ--LYVYKDRNVVAQLVRRAERAGFKAIALTVDTPR----LG-RREADIKNRFT-LP--PFLTLKN 183 (367)
Q Consensus 120 ~------~~~~~~~Q--Ly~~~d~~~~~~~l~ra~~~G~~ai~itvd~p~----~g-~r~~~~~~~~~-~p--~~~~~~~ 183 (367)
. .. ..|+. +.. .....+.++++..++.++.++.|+-+... .| .-.||++..-. .| .-++. .
T Consensus 133 ~V~~VKr~e-~g~i~dPvtl-~P~~Tv~da~~l~~~~~isgvpVvd~g~~~~kLvGIvT~RD~rf~d~~~~V~evMT~-~ 209 (556)
T 4af0_A 133 MVRRVKKYE-NGFITDPLCL-GPDATVGDVLEIKAKFGFCGVPITETGEPDSKLLGIVTGRDVQFQDAETPIKSVMTT-E 209 (556)
T ss_dssp HHHHHHHCC-C---------------------------------------------------------------------
T ss_pred HHHHHHhcc-cCccCCCeEc-CCCCCHHHHHHHHHHhCCCccccccccCcCCEEEEEEecccccccccceEhhhhccc-c
Confidence 1 11 11221 111 12233445555566667766665543110 00 11123321000 00 00000 0
Q ss_pred ccccccCccccccchhhHHHhhhc---------cCccc----cHHHHHhhcCCC------------EEEEecCC---HHH
Q 017718 184 FQGLDLGKMDEANDSGLAAYVAGQ---------IDRSL----SWKWLQTITKLP------------ILVKGVLT---AED 235 (367)
Q Consensus 184 ~~~~~~~~~~~~~~~~~~~~~~~~---------~d~~~----~~~~l~~~~~~P------------v~vK~v~~---~~~ 235 (367)
+.-.. .........+.+... .+..+ +.+-+.+...-| |....... .+-
T Consensus 210 lvt~~----~~~~leeA~~iL~~~kieklpVVd~~g~LvGlIT~kDi~k~~~~p~A~k~d~~grL~VgAAVgv~~d~~eR 285 (556)
T 4af0_A 210 VVTGS----SPITLEKANSLLRETKKGKLPIVDSNGHLVSLVARSDLLKNQNYPYASKVPESKQLYCGAAIGTRPGDKDR 285 (556)
T ss_dssp ----------------------------------------------------CTTCCBCTTTCCBCCEEEECSSHHHHHH
T ss_pred eEEec----CCCCHHHHHHHHHHccccceeEEccCCcEEEEEEechhhhhhhCCcchhcchhhceeeEEEeccCccHHHH
Confidence 00000 000000000000000 00000 111111111112 22222223 344
Q ss_pred HHHHHHcCCcEEEEcCCCCCCCCCccchHHHHHHHHHHhcCCCcEEEecCCCCHHHHHHHHHcCCCEEEech
Q 017718 236 ARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFIGR 307 (367)
Q Consensus 236 a~~~~~~G~d~i~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~~~via~GGI~~~~dv~kal~lGAd~V~ig~ 307 (367)
+..+.++|+|.|++...-|+ .....+.+..+++..+ +++||+ |.|.|++-+...+..|||+|-+|-
T Consensus 286 ~~aLv~AGvD~iviD~ahGh----s~~v~~~i~~ik~~~p-~~~via-GNVaT~e~a~~Li~aGAD~vkVGi 351 (556)
T 4af0_A 286 LKLLAEAGLDVVVLDSSQGN----SVYQIEFIKWIKQTYP-KIDVIA-GNVVTREQAAQLIAAGADGLRIGM 351 (556)
T ss_dssp HHHHHHTTCCEEEECCSCCC----SHHHHHHHHHHHHHCT-TSEEEE-EEECSHHHHHHHHHHTCSEEEECS
T ss_pred HHHHHhcCCcEEEEeccccc----cHHHHHHHHHHHhhCC-cceEEe-ccccCHHHHHHHHHcCCCEEeecC
Confidence 78899999999999753332 2345677888877653 677776 889999999988899999997763
|
| >2wqp_A Polysialic acid capsule biosynthesis protein SIAC; NEUB, inhibitor, TIM barrel, sialic acid synthase, transfera; HET: WQP; 1.75A {Neisseria meningitidis} PDB: 2zdr_A 1xuz_A* 1xuu_A 3cm4_A | Back alignment and structure |
|---|
Probab=94.80 E-value=1.4 Score=42.14 Aligned_cols=239 Identities=14% Similarity=0.154 Sum_probs=119.2
Q ss_pred eeEcCeee---ccceEeCcccchhccCChhhHHHHHHHHHcCCcee-ecCCCCCCHHHHH-hh---CC--Cc--eEEEEe
Q 017718 63 TTVLGFKI---SMPIMIAPTAMQKMAHPEGEYATARAASAAGTIMT-LSSWSTSSVEEVA-ST---GP--GI--RFFQLY 130 (367)
Q Consensus 63 t~i~g~~l---~~Pi~iAPm~~~~l~~~~~e~~~a~aa~~~G~~~~-vs~~~~~~~e~i~-~~---~~--~~--~~~QLy 130 (367)
+++.|.++ ..|++||.++.......+--..++++|+++|+.++ +.++. .+.+. .. .. +. ..+.+|
T Consensus 7 i~i~~~~iG~~~~~~iIAe~g~NH~gs~e~a~~li~~ak~aGadavKfq~~k---~~tl~s~~~~~fq~~~~~~~~y~~~ 83 (349)
T 2wqp_A 7 FKIGNRSVGYNHEPLIICEIGINHEGSLKTAFEMVDAAYNAGAEVVKHQTHI---VEDEMSDEAKQVIPGNADVSIYEIM 83 (349)
T ss_dssp EEETTEEEETTSCCEEEEEEETTTTTCHHHHHHHHHHHHHHTCSEEEEEECC---HHHHCCGGGGGCCCTTCSSCHHHHH
T ss_pred EEECCEEECCCCceEEEEecCCcccCCHHHHHHHHHHHHHhCCCEEeeeecc---cccccCcchhccccCCCCccHHHHH
Confidence 44555555 34899998875322222233478999999999876 33332 22221 10 00 00 000111
Q ss_pred e--cCCHHHHHHHHHHHHHcCCcEEEEecCCCCCCchhHHhhhhcCCCCccccccccccccCccccccchhhHHHhhhcc
Q 017718 131 V--YKDRNVVAQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLTLKNFQGLDLGKMDEANDSGLAAYVAGQI 208 (367)
Q Consensus 131 ~--~~d~~~~~~~l~ra~~~G~~ai~itvd~p~~g~r~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 208 (367)
. .-..+....+.+.+++.|...+-==.| .+.-|....+..|- +. -.
T Consensus 84 ~~~~l~~e~~~~L~~~~~~~Gi~~~st~~d-----~~svd~l~~~~v~~-~K--------------------------I~ 131 (349)
T 2wqp_A 84 ERCALNEEDEIKLKEYVESKGMIFISTLFS-----RAAALRLQRMDIPA-YK--------------------------IG 131 (349)
T ss_dssp HHHCCCHHHHHHHHHHHHHTTCEEEEEECS-----HHHHHHHHHHTCSC-EE--------------------------EC
T ss_pred HHhCCCHHHHHHHHHHHHHhCCeEEEeeCC-----HHHHHHHHhcCCCE-EE--------------------------EC
Confidence 1 235677788888999999876542222 11122221221110 00 00
Q ss_pred Cccc-cHHHHHh--hcCCCEEEEecC-CHHH----HHHHHHcCCcEEEEcCCCCCCCCCcc--chHHHHHHHHHHhcCCC
Q 017718 209 DRSL-SWKWLQT--ITKLPILVKGVL-TAED----ARIAVQAGAAGIIVSNHGARQLDYVP--ATIMALEEVVKATQGRI 278 (367)
Q Consensus 209 d~~~-~~~~l~~--~~~~Pv~vK~v~-~~~~----a~~~~~~G~d~i~vs~~gg~~~~~~~--~~~~~l~~i~~~~~~~~ 278 (367)
..++ ++..|++ .+++||++|..+ +.++ ++.+.+.|.+.+.+ |+-+....-+ ..+..++.+++..+ .+
T Consensus 132 S~~~~n~~LL~~va~~gkPviLstGmat~~Ei~~Ave~i~~~G~~iiLl--hc~s~Yp~~~~~~nL~ai~~lk~~f~-~l 208 (349)
T 2wqp_A 132 SGECNNYPLIKLVASFGKPIILSTGMNSIESIKKSVEIIREAGVPYALL--HCTNIYPTPYEDVRLGGMNDLSEAFP-DA 208 (349)
T ss_dssp GGGTTCHHHHHHHHTTCSCEEEECTTCCHHHHHHHHHHHHHHTCCEEEE--ECCCCSSCCGGGCCTHHHHHHHHHCT-TS
T ss_pred cccccCHHHHHHHHhcCCeEEEECCCCCHHHHHHHHHHHHHcCCCEEEE--eccCCCCCChhhcCHHHHHHHHHHCC-CC
Confidence 1122 3444443 368999999875 4544 45556778876666 4332222211 23455666665541 47
Q ss_pred cEEEecCCCCHHHHHHHHHcCCCEEEechHHHHHhhccChHH---H-HHHHHHHHHHHHHHHHHhCC
Q 017718 279 PVFLDGGVRRGTDVFKALALGASGIFIGRPVVYSLAAEGEKG---V-RRVLEMLREEFELAMALSGC 341 (367)
Q Consensus 279 ~via~GGI~~~~dv~kal~lGAd~V~ig~~~l~~l~~~G~~~---v-~~~i~~l~~el~~~m~~~G~ 341 (367)
||..++==....-...|.++||+ +|=+-|-..-...|.++ + -+-+..|.++++..-..+|.
T Consensus 209 pVg~sdHt~G~~~~~AAvAlGA~--iIEkH~tld~a~~G~D~~~SL~p~ef~~lv~~ir~~~~alG~ 273 (349)
T 2wqp_A 209 IIGLSDHTLDNYACLGAVALGGS--ILERHFTDRMDRPGPDIVCSMNPDTFKELKQGAHALKLARGG 273 (349)
T ss_dssp EEEEECCSSSSHHHHHHHHHTCC--EEEEEBCSCTTCCSTTGGGCBCHHHHHHHHHHHHHHHHHSSC
T ss_pred CEEeCCCCCcHHHHHHHHHhCCC--EEEeCCCccccCCCCChhhhCCHHHHHHHHHHHHHHHHHhCC
Confidence 88664411113344567789999 44443211111123211 0 12345666677777777774
|
| >1vs1_A 3-deoxy-7-phosphoheptulonate synthase; (beta/alpha)8 barrel, transferase; HET: PEP; 2.30A {Aeropyrum pernix} | Back alignment and structure |
|---|
Probab=94.80 E-value=1.4 Score=40.80 Aligned_cols=204 Identities=22% Similarity=0.286 Sum_probs=106.4
Q ss_pred CCCccceeEcCeee--ccceEeCcccchhccCChhhHHHHHHHHHcCCceee-cCCCCCCHHHHHhhCCCceEEEEeecC
Q 017718 57 SKIDMNTTVLGFKI--SMPIMIAPTAMQKMAHPEGEYATARAASAAGTIMTL-SSWSTSSVEEVASTGPGIRFFQLYVYK 133 (367)
Q Consensus 57 ~~vd~st~i~g~~l--~~Pi~iAPm~~~~l~~~~~e~~~a~aa~~~G~~~~v-s~~~~~~~e~i~~~~~~~~~~QLy~~~ 133 (367)
..-++.+++.+..+ ..|++||-.+ ...+.+.-..+++.+++.|..++- ..+...+ . +..|| +-
T Consensus 21 ~~~~~~i~i~~~~iG~~~~~vIAgpc--~~~~~e~a~~~a~~~k~~ga~~~k~~~~kprt-------s--~~~f~---g~ 86 (276)
T 1vs1_A 21 ERRETVVEVEGVRIGGGSKAVIAGPC--SVESWEQVREAALAVKEAGAHMLRGGAFKPRT-------S--PYSFQ---GL 86 (276)
T ss_dssp SCSCCCEEETTEEEBTTBCEEEEECS--BCCCHHHHHHHHHHHHHHTCSEEECBSSCCCS-------S--TTSCC---CC
T ss_pred CCCCcEEEECCEEECCCCeEEEEecC--CCCCHHHHHHHHHHHHHhCCCEEEeEEEeCCC-------C--hhhhc---CC
Confidence 33455566655444 2377777654 222223334789999999988763 3333211 1 11133 11
Q ss_pred CHHHHHHHHHHHHHcCCcEEEEecCCCCCCchhHHhhhhcCCCCccccccccccccCccccccchhhHHHhhhccCccc-
Q 017718 134 DRNVVAQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLTLKNFQGLDLGKMDEANDSGLAAYVAGQIDRSL- 212 (367)
Q Consensus 134 d~~~~~~~l~ra~~~G~~ai~itvd~p~~g~r~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~- 212 (367)
..+....+.+.+++.|...+. ++--|. .-+....+ .+- ..-+....
T Consensus 87 g~~gl~~l~~~~~~~Gl~~~t-e~~d~~----~~~~l~~~-vd~---------------------------~kIgs~~~~ 133 (276)
T 1vs1_A 87 GLEGLKLLRRAGDEAGLPVVT-EVLDPR----HVETVSRY-ADM---------------------------LQIGARNMQ 133 (276)
T ss_dssp THHHHHHHHHHHHHHTCCEEE-ECCCGG----GHHHHHHH-CSE---------------------------EEECGGGTT
T ss_pred CHHHHHHHHHHHHHcCCcEEE-ecCCHH----HHHHHHHh-CCe---------------------------EEECccccc
Confidence 355566666667788877653 221111 00110000 000 00000111
Q ss_pred cHHHHH--hhcCCCEEEEecC--CHHH----HHHHHHcCCcEEEEcCCCCCCCCC---ccchHHHHHHHHHHhcCCCcEE
Q 017718 213 SWKWLQ--TITKLPILVKGVL--TAED----ARIAVQAGAAGIIVSNHGARQLDY---VPATIMALEEVVKATQGRIPVF 281 (367)
Q Consensus 213 ~~~~l~--~~~~~Pv~vK~v~--~~~~----a~~~~~~G~d~i~vs~~gg~~~~~---~~~~~~~l~~i~~~~~~~~~vi 281 (367)
+...++ ..+++||++|..+ +.++ +..+...|-+-+++--.|.+.... -...+..++.+++.. .+||+
T Consensus 134 n~~ll~~~a~~~kPV~lk~G~~~t~~ei~~Ave~i~~~Gn~~i~L~~Rg~~~yp~y~~~~vdl~~i~~lk~~~--~lpVi 211 (276)
T 1vs1_A 134 NFPLLREVGRSGKPVLLKRGFGNTVEELLAAAEYILLEGNWQVVLVERGIRTFEPSTRFTLDVAAVAVLKEAT--HLPVI 211 (276)
T ss_dssp CHHHHHHHHHHTCCEEEECCTTCCHHHHHHHHHHHHHTTCCCEEEEECCBCCSCCSSSSBCBHHHHHHHHHHB--SSCEE
T ss_pred CHHHHHHHHccCCeEEEcCCCCCCHHHHHHHHHHHHHcCCCeEEEEeCCcCCCCCcCcchhCHHHHHHHHHHh--CCCEE
Confidence 222222 2368999999875 4555 444566787555553225544322 223556677776654 68998
Q ss_pred Eec----CCCC--HHHHHHHHHcCCCEEEechHH
Q 017718 282 LDG----GVRR--GTDVFKALALGASGIFIGRPV 309 (367)
Q Consensus 282 a~G----GI~~--~~dv~kal~lGAd~V~ig~~~ 309 (367)
++. |.+. ..-...++++||++++|=+-+
T Consensus 212 ~dssH~~g~~~~~~~~~~aAva~Ga~Gl~IE~H~ 245 (276)
T 1vs1_A 212 VDPSHPAGRRSLVPALAKAGLAAGADGLIVEVHP 245 (276)
T ss_dssp ECCHHHHCSGGGHHHHHHHHHHTTCSEEEEEBCS
T ss_pred EeCCCCCCccchHHHHHHHHHHcCCCEEEEEecC
Confidence 743 4433 333556788999999998855
|
| >3e96_A Dihydrodipicolinate synthase; structural genomics, nysgrc, target 9375C, operon, PSI-2; 1.80A {Bacillus clausii ksm-k16} SCOP: c.1.10.0 | Back alignment and structure |
|---|
Probab=94.78 E-value=0.046 Score=51.86 Aligned_cols=92 Identities=18% Similarity=0.172 Sum_probs=59.2
Q ss_pred HHHHHHcCCcEEEEcCCCCCCCCCcc-chHHHHHHHHHHhcCCCcEEEecCCCCHHHHHH----HHHcCCCEEEechHHH
Q 017718 236 ARIAVQAGAAGIIVSNHGARQLDYVP-ATIMALEEVVKATQGRIPVFLDGGVRRGTDVFK----ALALGASGIFIGRPVV 310 (367)
Q Consensus 236 a~~~~~~G~d~i~vs~~gg~~~~~~~-~~~~~l~~i~~~~~~~~~via~GGI~~~~dv~k----al~lGAd~V~ig~~~l 310 (367)
++.+.+.|+|+|++.|+.|-...-.. -..+++..+++.+.+++|||+--|- +-.++++ +-.+|||++++..|+.
T Consensus 39 v~~li~~Gv~Gl~v~GtTGE~~~Ls~eEr~~v~~~~v~~~~grvpViaGvg~-~t~~ai~la~~A~~~Gadavlv~~P~y 117 (316)
T 3e96_A 39 VDRIVDNGIDVIVPCGNTSEFYALSLEEAKEEVRRTVEYVHGRALVVAGIGY-ATSTAIELGNAAKAAGADAVMIHMPIH 117 (316)
T ss_dssp HHHHHTTTCCEECTTSGGGTGGGSCHHHHHHHHHHHHHHHTTSSEEEEEECS-SHHHHHHHHHHHHHHTCSEEEECCCCC
T ss_pred HHHHHHcCCCEEEeCccccCcccCCHHHHHHHHHHHHHHhCCCCcEEEEeCc-CHHHHHHHHHHHHhcCCCEEEEcCCCC
Confidence 45677899999999665442111111 1234566666667779999986564 7777664 3347999999999986
Q ss_pred HHhhccChHHHHHHHHHHHHH
Q 017718 311 YSLAAEGEKGVRRVLEMLREE 331 (367)
Q Consensus 311 ~~l~~~G~~~v~~~i~~l~~e 331 (367)
+. -.++++.++++.+.+.
T Consensus 118 ~~---~s~~~l~~~f~~va~a 135 (316)
T 3e96_A 118 PY---VTAGGVYAYFRDIIEA 135 (316)
T ss_dssp SC---CCHHHHHHHHHHHHHH
T ss_pred CC---CCHHHHHHHHHHHHHh
Confidence 42 2456666555555443
|
| >2rfg_A Dihydrodipicolinate synthase; beta barrel, amino-acid biosynthesis, diaminopimelate biosyn lyase, lysine biosynthesis, schiff base; 1.50A {Hahella chejuensis} | Back alignment and structure |
|---|
Probab=94.74 E-value=1.9 Score=40.25 Aligned_cols=179 Identities=13% Similarity=0.100 Sum_probs=100.4
Q ss_pred ceEeCcccchhccCChhhHHHHHHHHHcCCceee--c---CCCCCCHHHHH-------hh-CC-CceEEEEeecCCHHHH
Q 017718 73 PIMIAPTAMQKMAHPEGEYATARAASAAGTIMTL--S---SWSTSSVEEVA-------ST-GP-GIRFFQLYVYKDRNVV 138 (367)
Q Consensus 73 Pi~iAPm~~~~l~~~~~e~~~a~aa~~~G~~~~v--s---~~~~~~~e~i~-------~~-~~-~~~~~QLy~~~d~~~~ 138 (367)
|.++.|+ -.+-.+.+.-..+.+-.-+.|+...+ | +..+.+.+|-. +. .. -|.+...- ..+-+..
T Consensus 7 ~a~vTPf-~dg~iD~~~l~~lv~~li~~Gv~gi~v~GttGE~~~Ls~~Er~~v~~~~~~~~~grvpviaGvg-~~~t~~a 84 (297)
T 2rfg_A 7 IAMITPF-INGQVDEKALAGLVDWQIKHGAHGLVPVGTTGESPTLTEEEHKRVVALVAEQAQGRVPVIAGAG-SNNPVEA 84 (297)
T ss_dssp EECCCCE-ETTEECHHHHHHHHHHHHHTTCSEEECSSGGGTGGGSCHHHHHHHHHHHHHHHTTSSCBEEECC-CSSHHHH
T ss_pred EeeecCc-CCCCcCHHHHHHHHHHHHHcCCCEEEECccccchhhCCHHHHHHHHHHHHHHhCCCCeEEEccC-CCCHHHH
Confidence 4455666 33333433444666666778876443 3 33456766522 21 22 45666654 3456667
Q ss_pred HHHHHHHHHcCCcEEEEecCCCCCCchhHHhhhhcCCCCccccccccccccCccccccchhhHHHhhhccCccccHHHHH
Q 017718 139 AQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLTLKNFQGLDLGKMDEANDSGLAAYVAGQIDRSLSWKWLQ 218 (367)
Q Consensus 139 ~~~l~ra~~~G~~ai~itvd~p~~g~r~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~l~ 218 (367)
.++.+.|+++|++++.+. .|.. ...+ ..++.+ .++.+.
T Consensus 85 i~la~~A~~~Gadavlv~--~P~y-----------------~~~s-------------~~~l~~----------~f~~va 122 (297)
T 2rfg_A 85 VRYAQHAQQAGADAVLCV--AGYY-----------------NRPS-------------QEGLYQ----------HFKMVH 122 (297)
T ss_dssp HHHHHHHHHHTCSEEEEC--CCTT-----------------TCCC-------------HHHHHH----------HHHHHH
T ss_pred HHHHHHHHhcCCCEEEEc--CCCC-----------------CCCC-------------HHHHHH----------HHHHHH
Confidence 788999999999999873 3321 0000 001111 224666
Q ss_pred hhcCCCEEEEec-------CCHHHHHHHHHcC-CcEEEEcCCCCCCCCCccchHHHHHHHHHHhcCCCcEEEecCCCCHH
Q 017718 219 TITKLPILVKGV-------LTAEDARIAVQAG-AAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGT 290 (367)
Q Consensus 219 ~~~~~Pv~vK~v-------~~~~~a~~~~~~G-~d~i~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~~~via~GGI~~~~ 290 (367)
+.+++||++=.+ .+++...++.+.. +-+|.-+ .| .+..+.++.+..++++.| .+|. -.
T Consensus 123 ~a~~lPiilYn~P~~tg~~l~~~~~~~La~~pnIvgiKds--~g--------d~~~~~~~~~~~~~~f~v-~~G~---d~ 188 (297)
T 2rfg_A 123 DAIDIPIIVYNIPPRAVVDIKPETMARLAALPRIVGVKDA--TT--------DLARISRERMLINKPFSF-LSGD---DM 188 (297)
T ss_dssp HHCSSCEEEEECHHHHSCCCCHHHHHHHHTSTTEEEEEEC--SC--------CTTHHHHHHTTCCSCCEE-EESC---GG
T ss_pred HhcCCCEEEEeCccccCCCCCHHHHHHHHcCCCEEEEEeC--CC--------CHHHHHHHHHhcCCCEEE-EeCc---HH
Confidence 778999998764 5678777776542 2222221 11 122334444444445555 4452 34
Q ss_pred HHHHHHHcCCCEEEechHH
Q 017718 291 DVFKALALGASGIFIGRPV 309 (367)
Q Consensus 291 dv~kal~lGAd~V~ig~~~ 309 (367)
-++.++.+||+++.-+..-
T Consensus 189 ~~l~~l~~G~~G~is~~an 207 (297)
T 2rfg_A 189 TAIAYNASGGQGCISVSAN 207 (297)
T ss_dssp GHHHHHHTTCCEEEESGGG
T ss_pred HHHHHHHCCCCEEEecHHH
Confidence 4678899999999988753
|
| >2nql_A AGR_PAT_674P, isomerase/lactonizing enzyme; enolase, structural genomics, protein structure initiative, nysgxrc; 1.80A {Agrobacterium tumefaciens str} PDB: 4dn1_A | Back alignment and structure |
|---|
Probab=94.74 E-value=0.19 Score=48.84 Aligned_cols=118 Identities=14% Similarity=0.050 Sum_probs=82.7
Q ss_pred CCHHHHHHHHHHHHHcCCcEEEEecCCCCCCchhHHhhhhcCCCCccccccccccccCccccccchhhHHHhhhccCccc
Q 017718 133 KDRNVVAQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLTLKNFQGLDLGKMDEANDSGLAAYVAGQIDRSL 212 (367)
Q Consensus 133 ~d~~~~~~~l~ra~~~G~~ai~itvd~p~~g~r~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~ 212 (367)
.+++.+.+.++++.+.||+++-++++++-. +. .
T Consensus 163 ~~~e~~~~~a~~~~~~Gf~~vKik~g~~~~----------------------------------------------~~-~ 195 (388)
T 2nql_A 163 RTLKARGELAKYWQDRGFNAFKFATPVADD----------------------------------------------GP-A 195 (388)
T ss_dssp SSHHHHHHHHHHHHHTTCCEEEEEGGGCTT----------------------------------------------CH-H
T ss_pred CCHHHHHHHHHHHHHhCCCEEEEeCCCCCh----------------------------------------------HH-H
Confidence 477777888888889999999887653100 00 1
Q ss_pred -cHHHHHhhc--CCCEEEEec--CCHHH----HHHHHHcCCcEEEEcCCCCCCCCCccchHHHHHHHHHHhcCCCcEEEe
Q 017718 213 -SWKWLQTIT--KLPILVKGV--LTAED----ARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLD 283 (367)
Q Consensus 213 -~~~~l~~~~--~~Pv~vK~v--~~~~~----a~~~~~~G~d~i~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~~~via~ 283 (367)
..+.+|+.+ ++||.++.- .+.++ ++.+.+.|++.|-- ...+..++.+.++++.+ ++||+++
T Consensus 196 e~v~avr~a~g~d~~l~vDan~~~~~~~a~~~~~~l~~~~i~~iEq--------P~~~~d~~~~~~l~~~~--~iPI~~d 265 (388)
T 2nql_A 196 AEIANLRQVLGPQAKIAADMHWNQTPERALELIAEMQPFDPWFAEA--------PVWTEDIAGLEKVSKNT--DVPIAVG 265 (388)
T ss_dssp HHHHHHHHHHCTTSEEEEECCSCSCHHHHHHHHHHHGGGCCSCEEC--------CSCTTCHHHHHHHHTSC--CSCEEEC
T ss_pred HHHHHHHHHhCCCCEEEEECCCCCCHHHHHHHHHHHhhcCCCEEEC--------CCChhhHHHHHHHHhhC--CCCEEEe
Confidence 122566655 578888753 34444 45667778887631 11234677778877655 7999999
Q ss_pred cCCCCHHHHHHHHHcC-CCEEEech
Q 017718 284 GGVRRGTDVFKALALG-ASGIFIGR 307 (367)
Q Consensus 284 GGI~~~~dv~kal~lG-Ad~V~ig~ 307 (367)
+.+.+..++.+++..| +|.|++-.
T Consensus 266 E~~~~~~~~~~~i~~~~~d~v~ik~ 290 (388)
T 2nql_A 266 EEWRTHWDMRARIERCRIAIVQPEM 290 (388)
T ss_dssp TTCCSHHHHHHHHTTSCCSEECCCH
T ss_pred CCcCCHHHHHHHHHcCCCCEEEecC
Confidence 9999999999999987 89999854
|
| >2yyu_A Orotidine 5'-phosphate decarboxylase; TIM barrel, structural genomics, NPPSFA, national project on structural and functional analyses; HET: C5P; 2.20A {Geobacillus kaustophilus} PDB: 2yyt_A* | Back alignment and structure |
|---|
Probab=94.72 E-value=0.081 Score=48.21 Aligned_cols=74 Identities=24% Similarity=0.281 Sum_probs=48.5
Q ss_pred HHHcCCcEEEEcCCCCCCCCCccchHHHHHHHHHHhcCCCcEEEecCCCCH-H---------HHHHHHHcCCCEEEechH
Q 017718 239 AVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRG-T---------DVFKALALGASGIFIGRP 308 (367)
Q Consensus 239 ~~~~G~d~i~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~~~via~GGI~~~-~---------dv~kal~lGAd~V~ig~~ 308 (367)
..+.|.++++.+ ..+ +.++++..+ ..+++.+|||+-. . .+.+++..|||.+.+||+
T Consensus 152 ~~~~G~~g~V~~------------~~e-i~~lr~~~~-~~~i~V~gGI~~~g~~~~dq~rv~t~~~a~~aGad~iVvGr~ 217 (246)
T 2yyu_A 152 AKESGLDGVVCS------------ANE-AAFIKERCG-ASFLAVTPGIRFADDAAHDQVRVVTPRKARALGSDYIVIGRS 217 (246)
T ss_dssp HHHHTCCEEECC------------HHH-HHHHHHHHC-TTSEEEECCCCCCC-------CCCCHHHHHHHTCSEEEECHH
T ss_pred HHHhCCCEEEeC------------HHH-HHHHHHhcC-CCCEEEeCCcCCCCCCcccccccCCHHHHHHcCCCEEEECHh
Confidence 467888887652 234 666666654 3459999999742 2 266788899999999999
Q ss_pred HHHHhhccChHHHHHHHHHHHHHH
Q 017718 309 VVYSLAAEGEKGVRRVLEMLREEF 332 (367)
Q Consensus 309 ~l~~l~~~G~~~v~~~i~~l~~el 332 (367)
++.+ .. ..+.++.+++++
T Consensus 218 I~~a---~d---p~~a~~~l~~~i 235 (246)
T 2yyu_A 218 LTRA---AD---PLRTYARLQHEW 235 (246)
T ss_dssp HHTS---SS---HHHHHHHHHHHC
T ss_pred hcCC---CC---HHHHHHHHHHHH
Confidence 8742 12 233455555544
|
| >4avf_A Inosine-5'-monophosphate dehydrogenase; oxidoreductase; 2.23A {Pseudomonas aeruginosa} | Back alignment and structure |
|---|
Probab=94.71 E-value=0.082 Score=53.19 Aligned_cols=68 Identities=18% Similarity=0.201 Sum_probs=53.8
Q ss_pred HHHHHHHHHcCCcEEEEcCCCCCCCCCccchHHHHHHHHHHhcCCCcEEEecCCCCHHHHHHHHHcCCCEEEec
Q 017718 233 AEDARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFIG 306 (367)
Q Consensus 233 ~~~a~~~~~~G~d~i~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~~~via~GGI~~~~dv~kal~lGAd~V~ig 306 (367)
.+.++.+.++|+|.|++....| ......+.+.++++..+ ++||++ |.+.+.+++.++..+|||+|.+|
T Consensus 231 ~~~a~~l~~aG~d~I~id~a~g----~~~~~~~~v~~i~~~~p-~~~Vi~-g~v~t~e~a~~l~~aGaD~I~vg 298 (490)
T 4avf_A 231 GERVAALVAAGVDVVVVDTAHG----HSKGVIERVRWVKQTFP-DVQVIG-GNIATAEAAKALAEAGADAVKVG 298 (490)
T ss_dssp HHHHHHHHHTTCSEEEEECSCC----SBHHHHHHHHHHHHHCT-TSEEEE-EEECSHHHHHHHHHTTCSEEEEC
T ss_pred HHHHHHHhhcccceEEecccCC----cchhHHHHHHHHHHHCC-CceEEE-eeeCcHHHHHHHHHcCCCEEEEC
Confidence 5778999999999999854222 12345677888877663 578887 77999999999999999999985
|
| >3s5o_A 4-hydroxy-2-oxoglutarate aldolase, mitochondrial; beta barrel, schiff base, hydroxyproline metabolis; HET: KPI; 1.97A {Homo sapiens} SCOP: c.1.10.0 PDB: 3s5n_A | Back alignment and structure |
|---|
Probab=94.66 E-value=0.083 Score=49.84 Aligned_cols=92 Identities=10% Similarity=0.074 Sum_probs=56.0
Q ss_pred HHHHHHcCCcEEEEcCCCCCCCCCcc-chHHHHHHHHHHhcCCCcEEEecCCCCHHHHH----HHHHcCCCEEEechHHH
Q 017718 236 ARIAVQAGAAGIIVSNHGARQLDYVP-ATIMALEEVVKATQGRIPVFLDGGVRRGTDVF----KALALGASGIFIGRPVV 310 (367)
Q Consensus 236 a~~~~~~G~d~i~vs~~gg~~~~~~~-~~~~~l~~i~~~~~~~~~via~GGI~~~~dv~----kal~lGAd~V~ig~~~l 310 (367)
++.+.+.|+|+|++.++.|-...-.. -..+++..+++.+.+++|||+--|=.+-.+++ .+-.+|||++++-.|+.
T Consensus 41 v~~li~~Gv~Gl~v~GtTGE~~~Ls~~Er~~v~~~~~~~~~gr~pviaGvg~~~t~~ai~la~~A~~~Gadavlv~~P~y 120 (307)
T 3s5o_A 41 LHKLGTFPFRGFVVQGSNGEFPFLTSSERLEVVSRVRQAMPKNRLLLAGSGCESTQATVEMTVSMAQVGADAAMVVTPCY 120 (307)
T ss_dssp HHHHTTSCCSEEEESSGGGTGGGSCHHHHHHHHHHHHHTSCTTSEEEEECCCSSHHHHHHHHHHHHHTTCSEEEEECCCT
T ss_pred HHHHHHcCCCEEEECccccchhhCCHHHHHHHHHHHHHHcCCCCcEEEecCCCCHHHHHHHHHHHHHcCCCEEEEcCCCc
Confidence 35567899999999765442111111 12345555566666789998854545555555 33458999999999987
Q ss_pred HHhhccChHHHHHHHHHH
Q 017718 311 YSLAAEGEKGVRRVLEML 328 (367)
Q Consensus 311 ~~l~~~G~~~v~~~i~~l 328 (367)
+.. .-.++++.++++.+
T Consensus 121 ~~~-~~s~~~l~~~f~~i 137 (307)
T 3s5o_A 121 YRG-RMSSAALIHHYTKV 137 (307)
T ss_dssp TGG-GCCHHHHHHHHHHH
T ss_pred CCC-CCCHHHHHHHHHHH
Confidence 631 01345555555444
|
| >1vli_A Spore coat polysaccharide biosynthesis protein SP; 2636322, JCSG, protein structure initiative, BS SPSE, PSI; 2.38A {Bacillus subtilis} SCOP: b.85.1.1 c.1.10.6 | Back alignment and structure |
|---|
Probab=94.65 E-value=2.2 Score=41.32 Aligned_cols=199 Identities=13% Similarity=0.119 Sum_probs=99.9
Q ss_pred eeEcCeee---ccceEeCcccchhccCChhhHHHHHHHHHcCCcee-ecCCCCCCHHHHHhhCCCceEEE----------
Q 017718 63 TTVLGFKI---SMPIMIAPTAMQKMAHPEGEYATARAASAAGTIMT-LSSWSTSSVEEVASTGPGIRFFQ---------- 128 (367)
Q Consensus 63 t~i~g~~l---~~Pi~iAPm~~~~l~~~~~e~~~a~aa~~~G~~~~-vs~~~~~~~e~i~~~~~~~~~~Q---------- 128 (367)
.+|.++.+ ..|++||=+|.......+--..++++|+++|+.++ +.++.. +.+. .|...-||
T Consensus 16 ~~~~~~~ig~~~~~~IIAEiG~NH~Gsle~A~~li~~Ak~aGAdavKfQ~~k~---~tl~--s~~~~~fq~~~~~~~~~y 90 (385)
T 1vli_A 16 FQIANKTVGKDAPVFIIAEAGINHDGKLDQAFALIDAAAEAGADAVKFQMFQA---DRMY--QKDPGLYKTAAGKDVSIF 90 (385)
T ss_dssp EEETTEEEETTSCCEEEEEEETTTTTCHHHHHHHHHHHHHHTCSEEEECCBCG---GGGT--SCCC---------CCCHH
T ss_pred eeECCEEeCCCCCcEEEEeecCcccccHHHHHHHHHHHHHhCCCEEeeeeecc---Cccc--CcchhhhccCCCCCccHH
Confidence 44555555 35899998765432222223478999999999876 333321 1110 00000122
Q ss_pred -Eee--cCCHHHHHHHHHHHHHcCCcEEEEecCCCCCCchhHHhhhhcCCCCccccccccccccCccccccchhhHHHhh
Q 017718 129 -LYV--YKDRNVVAQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLTLKNFQGLDLGKMDEANDSGLAAYVA 205 (367)
Q Consensus 129 -Ly~--~~d~~~~~~~l~ra~~~G~~ai~itvd~p~~g~r~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 205 (367)
+|. .-..+....+.+.+++.|...+- +|. ..+.-|....+..|- +.
T Consensus 91 e~~~~~~l~~e~~~~L~~~~~~~Gi~~~s----tpf-D~~svd~l~~~~vd~-~K------------------------- 139 (385)
T 1vli_A 91 SLVQSMEMPAEWILPLLDYCREKQVIFLS----TVC-DEGSADLLQSTSPSA-FK------------------------- 139 (385)
T ss_dssp HHGGGBSSCGGGHHHHHHHHHHTTCEEEC----BCC-SHHHHHHHHTTCCSC-EE-------------------------
T ss_pred HHHHhcCCCHHHHHHHHHHHHHcCCcEEE----ccC-CHHHHHHHHhcCCCE-EE-------------------------
Confidence 221 22466778888999999977552 222 122222222221110 00
Q ss_pred hccCccc-cHHHHHh--hcCCCEEEEecC-CHHH----HHHHHHcCC-cEEEEcCCCCCCCCCcc--chHHHHHHHHHHh
Q 017718 206 GQIDRSL-SWKWLQT--ITKLPILVKGVL-TAED----ARIAVQAGA-AGIIVSNHGARQLDYVP--ATIMALEEVVKAT 274 (367)
Q Consensus 206 ~~~d~~~-~~~~l~~--~~~~Pv~vK~v~-~~~~----a~~~~~~G~-d~i~vs~~gg~~~~~~~--~~~~~l~~i~~~~ 274 (367)
-...++ ++..|++ .+++||++|..+ +.++ ++.+.+.|. +.+.+ |+-+....-+ ..+..++.+++..
T Consensus 140 -IgS~~~~N~pLL~~va~~gKPViLStGmaTl~Ei~~Ave~i~~~Gn~~iiLl--hc~s~YPtp~~~~nL~aI~~Lk~~f 216 (385)
T 1vli_A 140 -IASYEINHLPLLKYVARLNRPMIFSTAGAEISDVHEAWRTIRAEGNNQIAIM--HCVAKYPAPPEYSNLSVIPMLAAAF 216 (385)
T ss_dssp -ECGGGTTCHHHHHHHHTTCSCEEEECTTCCHHHHHHHHHHHHTTTCCCEEEE--EECSSSSCCGGGCCTTHHHHHHHHS
T ss_pred -ECcccccCHHHHHHHHhcCCeEEEECCCCCHHHHHHHHHHHHHCCCCcEEEE--eccCCCCCChhhcCHHHHHHHHHHc
Confidence 001122 3444443 368999999875 4544 445566787 44444 3322222211 1334566665554
Q ss_pred cCCCcEEEecCCCC--HHHHHHHHHcCCCE
Q 017718 275 QGRIPVFLDGGVRR--GTDVFKALALGASG 302 (367)
Q Consensus 275 ~~~~~via~GGI~~--~~dv~kal~lGAd~ 302 (367)
+ .+||..++ =.. ..-...|.++||+.
T Consensus 217 ~-~lpVG~Sd-Ht~G~~~~~~AAvAlGA~i 244 (385)
T 1vli_A 217 P-EAVIGFSD-HSEHPTEAPCAAVRLGAKL 244 (385)
T ss_dssp T-TSEEEEEE-CCSSSSHHHHHHHHTTCSE
T ss_pred C-CCCEEeCC-CCCCchHHHHHHHHcCCCE
Confidence 2 47885544 222 34455678899993
|
| >1mxs_A KDPG aldolase; 2-keto-3-deoxy-6-phosphogluconate aldolase, sulfate, beta-BA lyase; 2.20A {Pseudomonas putida} SCOP: c.1.10.1 | Back alignment and structure |
|---|
Probab=94.64 E-value=0.062 Score=48.50 Aligned_cols=116 Identities=16% Similarity=0.204 Sum_probs=76.2
Q ss_pred EEEeecCCHHHHHHHHHHHHHcCCcEEEEecCCCCCCchhHHhhhhcCCCCccccccccccccCccccccchhhHHHhhh
Q 017718 127 FQLYVYKDRNVVAQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLTLKNFQGLDLGKMDEANDSGLAAYVAG 206 (367)
Q Consensus 127 ~QLy~~~d~~~~~~~l~ra~~~G~~ai~itvd~p~~g~r~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 206 (367)
+-+....+.+...++++.+.+.|++.+-++...+.. .+
T Consensus 29 i~V~r~~~~~~~~~~~~al~~gGv~~iel~~k~~~~--------------------------------------~~---- 66 (225)
T 1mxs_A 29 LPVITIAREEDILPLADALAAGGIRTLEVTLRSQHG--------------------------------------LK---- 66 (225)
T ss_dssp EEEECCSCGGGHHHHHHHHHHTTCCEEEEESSSTHH--------------------------------------HH----
T ss_pred EEEEeCCCHHHHHHHHHHHHHCCCCEEEEecCCccH--------------------------------------HH----
Confidence 333334566666778888888999988876542210 00
Q ss_pred ccCccccHHHHHhhc-CCCEEEEecCCHHHHHHHHHcCCcEEEEcCCCCCCCCCccchHHHHHHHHHHhcCCCcEEEecC
Q 017718 207 QIDRSLSWKWLQTIT-KLPILVKGVLTAEDARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGG 285 (367)
Q Consensus 207 ~~d~~~~~~~l~~~~-~~Pv~vK~v~~~~~a~~~~~~G~d~i~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~~~via~GG 285 (367)
.++.+++.+ ++-+....+.+.++++.+.++|+|+++. |+ . +.+.+ +.++.. .+++|. |
T Consensus 67 ------~i~~l~~~~~~~~igagtvl~~d~~~~A~~aGAd~v~~---p~--~-----d~~v~-~~~~~~--g~~~i~--G 125 (225)
T 1mxs_A 67 ------AIQVLREQRPELCVGAGTVLDRSMFAAVEAAGAQFVVT---PG--I-----TEDIL-EAGVDS--EIPLLP--G 125 (225)
T ss_dssp ------HHHHHHHHCTTSEEEEECCCSHHHHHHHHHHTCSSEEC---SS--C-----CHHHH-HHHHHC--SSCEEC--E
T ss_pred ------HHHHHHHhCcccEEeeCeEeeHHHHHHHHHCCCCEEEe---CC--C-----CHHHH-HHHHHh--CCCEEE--e
Confidence 122455555 3444445567889999999999999964 21 1 22333 233333 567765 4
Q ss_pred CCCHHHHHHHHHcCCCEEEe
Q 017718 286 VRRGTDVFKALALGASGIFI 305 (367)
Q Consensus 286 I~~~~dv~kal~lGAd~V~i 305 (367)
+.|++++.+++.+|||.|.+
T Consensus 126 ~~t~~e~~~A~~~Gad~vk~ 145 (225)
T 1mxs_A 126 ISTPSEIMMGYALGYRRFKL 145 (225)
T ss_dssp ECSHHHHHHHHTTTCCEEEE
T ss_pred eCCHHHHHHHHHCCCCEEEE
Confidence 99999999999999999999
|
| >3d0c_A Dihydrodipicolinate synthase; lysine biosynthesis, pyruvate, TIM barrel, NYSGXRC, PSI-2, structural genomics; 1.90A {Oceanobacillus iheyensis HTE831} | Back alignment and structure |
|---|
Probab=94.60 E-value=0.064 Score=50.83 Aligned_cols=90 Identities=17% Similarity=0.196 Sum_probs=55.7
Q ss_pred HHHHHHcCCcEEEEcCCCCCCCCCcc-chHHHHHHHHHHhcCCCcEEEecCCCCHHHHHH----HHHcCCCEEEechHHH
Q 017718 236 ARIAVQAGAAGIIVSNHGARQLDYVP-ATIMALEEVVKATQGRIPVFLDGGVRRGTDVFK----ALALGASGIFIGRPVV 310 (367)
Q Consensus 236 a~~~~~~G~d~i~vs~~gg~~~~~~~-~~~~~l~~i~~~~~~~~~via~GGI~~~~dv~k----al~lGAd~V~ig~~~l 310 (367)
++.+.+.|+|+|++.|+.|-...-.. -..+++..+++.+.+++|||+--|= +-.++++ +-.+|||++++-.|++
T Consensus 39 v~~li~~Gv~gl~v~GtTGE~~~Ls~eEr~~vi~~~~~~~~grvpViaGvg~-st~~ai~la~~A~~~Gadavlv~~P~y 117 (314)
T 3d0c_A 39 VEFLLQNGIEVIVPNGNTGEFYALTIEEAKQVATRVTELVNGRATVVAGIGY-SVDTAIELGKSAIDSGADCVMIHQPVH 117 (314)
T ss_dssp HHHHHHTTCSEECTTSGGGTGGGSCHHHHHHHHHHHHHHHTTSSEEEEEECS-SHHHHHHHHHHHHHTTCSEEEECCCCC
T ss_pred HHHHHHcCCCEEEECcccCChhhCCHHHHHHHHHHHHHHhCCCCeEEecCCc-CHHHHHHHHHHHHHcCCCEEEECCCCC
Confidence 45678899999998665442111111 1334556666666778999873333 5555553 3347999999999987
Q ss_pred HHhhccChHHHHHHHHHHH
Q 017718 311 YSLAAEGEKGVRRVLEMLR 329 (367)
Q Consensus 311 ~~l~~~G~~~v~~~i~~l~ 329 (367)
+.. .++++.++++.+.
T Consensus 118 ~~~---s~~~l~~~f~~va 133 (314)
T 3d0c_A 118 PYI---TDAGAVEYYRNII 133 (314)
T ss_dssp SCC---CHHHHHHHHHHHH
T ss_pred CCC---CHHHHHHHHHHHH
Confidence 632 3555555555443
|
| >1i4n_A Indole-3-glycerol phosphate synthase; thermostable TIM-barrel protein, salt bridges, electrostatic interactions, lyase; 2.50A {Thermotoga maritima} SCOP: c.1.2.4 PDB: 1j5t_A | Back alignment and structure |
|---|
Probab=94.53 E-value=0.62 Score=42.62 Aligned_cols=86 Identities=20% Similarity=0.254 Sum_probs=58.9
Q ss_pred cHHHHHhhcCCCEEEEec-CCHHHHHHHHHcCCcEEEEcCCCCCCCCCccchHHHHHHHHHHhcCCCcEEEecCCCCHHH
Q 017718 213 SWKWLQTITKLPILVKGV-LTAEDARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTD 291 (367)
Q Consensus 213 ~~~~l~~~~~~Pv~vK~v-~~~~~a~~~~~~G~d~i~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~~~via~GGI~~~~d 291 (367)
++..+|+.+++||+-|.- .+......+..+|||+|.+...- ++ ..++..+.+..+.+ .+.++++ ++|.++
T Consensus 92 dL~~ir~~v~lPvLrKDfi~~~~qi~ea~~~GAD~ilLi~a~---l~--~~~l~~l~~~a~~l--Gl~~lvE--v~~~eE 162 (251)
T 1i4n_A 92 FVRAARNLTCRPILAKDFYIDTVQVKLASSVGADAILIIARI---LT--AEQIKEIYEAAEEL--GMDSLVE--VHSRED 162 (251)
T ss_dssp HHHHHHTTCCSCEEEECCCCSTHHHHHHHHTTCSEEEEEGGG---SC--HHHHHHHHHHHHTT--TCEEEEE--ECSHHH
T ss_pred HHHHHHHhCCCCEEEeeCCCCHHHHHHHHHcCCCEEEEeccc---CC--HHHHHHHHHHHHHc--CCeEEEE--eCCHHH
Confidence 345788889999999985 33445666999999999885321 11 12333333333323 5666665 679999
Q ss_pred HHHHHHc-CCCEEEech
Q 017718 292 VFKALAL-GASGIFIGR 307 (367)
Q Consensus 292 v~kal~l-GAd~V~ig~ 307 (367)
+.+++.+ |++.|++-.
T Consensus 163 ~~~A~~l~g~~iIGinn 179 (251)
T 1i4n_A 163 LEKVFSVIRPKIIGINT 179 (251)
T ss_dssp HHHHHTTCCCSEEEEEC
T ss_pred HHHHHhcCCCCEEEEeC
Confidence 9999999 999998865
|
| >4fxs_A Inosine-5'-monophosphate dehydrogenase; structural genomics, IMPDH, IMP, mycophenolic acid, MOA; HET: IMP MOA; 2.24A {Vibrio cholerae o1 biovar el tor} | Back alignment and structure |
|---|
Probab=94.48 E-value=0.1 Score=52.60 Aligned_cols=244 Identities=14% Similarity=0.150 Sum_probs=129.0
Q ss_pred ccccceeeccccC-CCCCCccceeEc-CeeeccceEeCcccchhccCChhhHHHHHHHHHcCCceeecCCCCCCHHHHH-
Q 017718 42 AFSRILFRPRILI-DVSKIDMNTTVL-GFKISMPIMIAPTAMQKMAHPEGEYATARAASAAGTIMTLSSWSTSSVEEVA- 118 (367)
Q Consensus 42 ~~~~i~l~pr~l~-~~~~vd~st~i~-g~~l~~Pi~iAPm~~~~l~~~~~e~~~a~aa~~~G~~~~vs~~~~~~~e~i~- 118 (367)
.||++.|+|..-. ..+++|++|.+- +..+..|++.|||...+ +..++.+.++.|-..++. .+.+.++..
T Consensus 12 t~~d~~~~p~~~~~~~~~~~~~t~lt~~i~l~iPivsa~MdtVT------e~~ma~a~a~~GGiGvI~--~n~s~e~qa~ 83 (496)
T 4fxs_A 12 TFDDVLLVPAHSTVLPNTADLRTRLTKNIALNIPMVSASMDTVT------EARLAIALAQEGGIGFIH--KNMSIEQQAA 83 (496)
T ss_dssp CGGGEEECCCCCCCCGGGCBCCEEEETTEEESSSEEECCCTTTC------SHHHHHHHHHHTCEEEEC--SSSCHHHHHH
T ss_pred CcccEEEecCccccccccccccceeccccccCCCceecCcchhh------HHHHHHHHHHcCCcceec--CCCCHHHHHH
Confidence 4999999996542 235789999874 68899999999996554 567777777777655554 244554422
Q ss_pred ------hhCC----CceEEEEeecCCHHHHHHHHHHHHHcCCcEEEEecCC--CCCCchhHHhhhhcCCCCccccccccc
Q 017718 119 ------STGP----GIRFFQLYVYKDRNVVAQLVRRAERAGFKAIALTVDT--PRLGRREADIKNRFTLPPFLTLKNFQG 186 (367)
Q Consensus 119 ------~~~~----~~~~~QLy~~~d~~~~~~~l~ra~~~G~~ai~itvd~--p~~g~r~~~~~~~~~~p~~~~~~~~~~ 186 (367)
.... .+.++ .......++++...+.++..+.|.=+. .+.=...+|++... ........+..
T Consensus 84 ~V~~Vk~~~~~m~~d~v~v-----~~~~tv~ea~~~m~~~~~s~~PVvd~~~~lvGiVt~rDL~~~~--~~~~~v~diM~ 156 (496)
T 4fxs_A 84 QVHQVKIFEAGVVTHPVTV-----RPEQTIADVMELTHYHGFAGFPVVTENNELVGIITGRDVRFVT--DLTKSVAAVMT 156 (496)
T ss_dssp HHHHHHHCCC--CBCCCCB-----CSSSBHHHHHHHHTSSCCCEEEEECSSSBEEEEEEHHHHTTCC--CTTSBGGGTSE
T ss_pred HHHhccccccccccCceEE-----CCCCCHHHHHHHHHHcCCcEEEEEccCCEEEEEEEHHHHhhcc--cCCCcHHHHhc
Confidence 1111 22222 122334566777777888877664321 11001234554111 00000000000
Q ss_pred -c-ccCcccc-ccchhhHHHhhhc---------cCcc----ccHHHHHhhc---------CCCEEEEe--c---CCHHHH
Q 017718 187 -L-DLGKMDE-ANDSGLAAYVAGQ---------IDRS----LSWKWLQTIT---------KLPILVKG--V---LTAEDA 236 (367)
Q Consensus 187 -~-~~~~~~~-~~~~~~~~~~~~~---------~d~~----~~~~~l~~~~---------~~Pv~vK~--v---~~~~~a 236 (367)
. +.....+ .......+.+... .+.. ++.+.+.+.. +..+.+.. . .+.+.+
T Consensus 157 p~~~~vtv~~~~~l~ea~~~m~~~~i~~lpVVDe~G~l~GiIT~~DIl~~~~~p~a~~d~~grL~v~aavG~~~d~~~~a 236 (496)
T 4fxs_A 157 PKERLATVKEGATGAEVQEKMHKARVEKILVVNDEFQLKGMITAKDFHKAESKPNACKDEQGRLRVGAAVGAAPGNEERV 236 (496)
T ss_dssp EGGGCCEEECC----CGGGTCC---CCCEEEECTTSBCCEEECCC-----CCCTTCCBCTTSCBCCEEECCSSSCCHHHH
T ss_pred CCCCCEEECCCCCHHHHHHHHHHcCCCEEEEEcCCCCEEEeehHhHHHHhhcccchhhhcccceeeeeeeccccchHHHH
Confidence 0 0000000 0000000000000 0000 1111111111 11222221 1 246889
Q ss_pred HHHHHcCCcEEEEcCCCCCCCCCccchHHHHHHHHHHhcCCCcEEEecCCCCHHHHHHHHHcCCCEEEec
Q 017718 237 RIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFIG 306 (367)
Q Consensus 237 ~~~~~~G~d~i~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~~~via~GGI~~~~dv~kal~lGAd~V~ig 306 (367)
+.+.++|+|.|.+...-| ......+.+.++++..+ ++||++ |.+.+.+++.++..+|||+|.+|
T Consensus 237 ~~l~~aG~d~I~id~a~g----~~~~~~~~i~~ir~~~p-~~~Vi~-g~v~t~e~a~~l~~aGaD~I~Vg 300 (496)
T 4fxs_A 237 KALVEAGVDVLLIDSSHG----HSEGVLQRIRETRAAYP-HLEIIG-GNVATAEGARALIEAGVSAVKVG 300 (496)
T ss_dssp HHHHHTTCSEEEEECSCT----TSHHHHHHHHHHHHHCT-TCCEEE-EEECSHHHHHHHHHHTCSEEEEC
T ss_pred HHHHhccCceEEeccccc----cchHHHHHHHHHHHHCC-CceEEE-cccCcHHHHHHHHHhCCCEEEEC
Confidence 999999999999854222 12345677888887763 688888 78999999999999999999986
|
| >1nu5_A Chloromuconate cycloisomerase; enzyme, dehalogenation; 1.95A {Pseudomonas SP} SCOP: c.1.11.2 d.54.1.1 | Back alignment and structure |
|---|
Probab=94.48 E-value=0.79 Score=43.90 Aligned_cols=119 Identities=9% Similarity=0.038 Sum_probs=83.2
Q ss_pred CCHHHHHHHHHHHHH-cCCcEEEEecCCCCCCchhHHhhhhcCCCCccccccccccccCccccccchhhHHHhhhccCcc
Q 017718 133 KDRNVVAQLVRRAER-AGFKAIALTVDTPRLGRREADIKNRFTLPPFLTLKNFQGLDLGKMDEANDSGLAAYVAGQIDRS 211 (367)
Q Consensus 133 ~d~~~~~~~l~ra~~-~G~~ai~itvd~p~~g~r~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~ 211 (367)
.+++.+.+.++++.+ .||+++-++++++-. + .+
T Consensus 141 ~~~e~~~~~a~~~~~~~Gf~~iKik~g~~~~--~--------------------------------------------~~ 174 (370)
T 1nu5_A 141 GDTARDIDSALEMIETRRHNRFKVKLGARTP--A--------------------------------------------QD 174 (370)
T ss_dssp SCHHHHHHHHHHHHHTTSCSEEEEECSSSCH--H--------------------------------------------HH
T ss_pred CCHHHHHHHHHHHHHhCCccEEEEecCCCCh--H--------------------------------------------HH
Confidence 567777778888888 999999887764210 0 00
Q ss_pred c-cHHHHHhhc--CCCEEEEec--CCHHH----HHHHHHcCCcEEEEcCCCCCCCCCccchHHHHHHHHHHhcCCCcEEE
Q 017718 212 L-SWKWLQTIT--KLPILVKGV--LTAED----ARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFL 282 (367)
Q Consensus 212 ~-~~~~l~~~~--~~Pv~vK~v--~~~~~----a~~~~~~G~d~i~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~~~via 282 (367)
. ..+.+|+.. ++++.+..- .+.++ ++.+.+.|++.|- +. ..+..++.+.++++.+ ++||++
T Consensus 175 ~e~v~avr~a~g~~~~l~vDan~~~~~~~a~~~~~~l~~~~i~~iE-------qP-~~~~~~~~~~~l~~~~--~ipIa~ 244 (370)
T 1nu5_A 175 LEHIRSIVKAVGDRASVRVDVNQGWDEQTASIWIPRLEEAGVELVE-------QP-VPRANFGALRRLTEQN--GVAILA 244 (370)
T ss_dssp HHHHHHHHHHHGGGCEEEEECTTCCCHHHHHHHHHHHHHHTCCEEE-------CC-SCTTCHHHHHHHHHHC--SSEEEE
T ss_pred HHHHHHHHHhcCCCCEEEEECCCCCCHHHHHHHHHHHHhcCcceEe-------CC-CCcccHHHHHHHHHhC--CCCEEe
Confidence 0 112556554 367777643 34444 5567788988764 11 1234677888888776 799999
Q ss_pred ecCCCCHHHHHHHHHcC-CCEEEech
Q 017718 283 DGGVRRGTDVFKALALG-ASGIFIGR 307 (367)
Q Consensus 283 ~GGI~~~~dv~kal~lG-Ad~V~ig~ 307 (367)
++.+.+..|+.+++..| +|.|++--
T Consensus 245 dE~~~~~~~~~~~i~~~~~d~v~ik~ 270 (370)
T 1nu5_A 245 DESLSSLSSAFELARDHAVDAFSLKL 270 (370)
T ss_dssp STTCCSHHHHHHHHHTTCCSEEEECH
T ss_pred CCCCCCHHHHHHHHHhCCCCEEEEch
Confidence 99999999999999987 89999964
|
| >3ru6_A Orotidine 5'-phosphate decarboxylase; structural genomics, center for structural genomics of infec diseases (csgid), TIM-barrel; 1.80A {Campylobacter jejuni subsp} | Back alignment and structure |
|---|
Probab=94.47 E-value=0.11 Score=49.00 Aligned_cols=64 Identities=20% Similarity=0.244 Sum_probs=45.3
Q ss_pred HHHHHHHHcCCcEEEEcCCCCCCCCCccchHHHHHHHHHHhcCCCcEEEecCCCCHH----------HHHHHHHcCCCEE
Q 017718 234 EDARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGT----------DVFKALALGASGI 303 (367)
Q Consensus 234 ~~a~~~~~~G~d~i~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~~~via~GGI~~~~----------dv~kal~lGAd~V 303 (367)
+-|+.+.++|+||++.+.+ . +..+++.++ .-.++..+||+-.. .+.+++..|||.+
T Consensus 162 ~lA~~a~~~G~dGvV~s~~----------E---~~~IR~~~~-~~fl~VTPGIr~qG~~~~DQ~Rv~t~~~a~~aGAd~i 227 (303)
T 3ru6_A 162 NFSKISYENGLDGMVCSVF----------E---SKKIKEHTS-SNFLTLTPGIRPFGETNDDQKRVANLAMARENLSDYI 227 (303)
T ss_dssp HHHHHHHHTTCSEEECCTT----------T---HHHHHHHSC-TTSEEEECCCCTTC--------CCSHHHHHHTTCSEE
T ss_pred HHHHHHHHcCCCEEEECHH----------H---HHHHHHhCC-CccEEECCCcCcccCCcccccccCCHHHHHHcCCCEE
Confidence 3467788999999987431 1 345666554 33488899998321 3557788999999
Q ss_pred EechHHHH
Q 017718 304 FIGRPVVY 311 (367)
Q Consensus 304 ~ig~~~l~ 311 (367)
.+||++..
T Consensus 228 VvGr~I~~ 235 (303)
T 3ru6_A 228 VVGRPIYK 235 (303)
T ss_dssp EECHHHHT
T ss_pred EEChHHhC
Confidence 99998764
|
| >3ffs_A Inosine-5-monophosphate dehydrogenase; beta-alpha barrel, TIM fold, oxidoreductase; 3.19A {Cryptosporidium parvum} | Back alignment and structure |
|---|
Probab=94.46 E-value=0.071 Score=52.28 Aligned_cols=67 Identities=27% Similarity=0.383 Sum_probs=50.7
Q ss_pred HHHHHHHHHcCCcEEEEcCCCCCCCCCccchHHHHHHHHHHhcCCCcEEEecCCCCHHHHHHHHHcCCCEEEec
Q 017718 233 AEDARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFIG 306 (367)
Q Consensus 233 ~~~a~~~~~~G~d~i~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~~~via~GGI~~~~dv~kal~lGAd~V~ig 306 (367)
.+.++.+.++|+|.|++..+.|. .....+.+.++++.. .+||++ |++.+.+++.++..+|||+|.+|
T Consensus 146 ~e~~~~lveaGvdvIvldta~G~----~~~~~e~I~~ik~~~--~i~Vi~-g~V~t~e~A~~a~~aGAD~I~vG 212 (400)
T 3ffs_A 146 IERAKLLVEAGVDVIVLDSAHGH----SLNIIRTLKEIKSKM--NIDVIV-GNVVTEEATKELIENGADGIKVG 212 (400)
T ss_dssp CHHHHHHHHHTCSEEEECCSCCS----BHHHHHHHHHHHTTC--CCEEEE-EEECSHHHHHHHHHTTCSEEEEC
T ss_pred HHHHHHHHHcCCCEEEEeCCCCC----cccHHHHHHHHHhcC--CCeEEE-eecCCHHHHHHHHHcCCCEEEEe
Confidence 67899999999999988432221 112356666666544 678887 78999999999999999999996
|
| >3si9_A DHDPS, dihydrodipicolinate synthase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, TIM barrel; 2.10A {Bartonella henselae} | Back alignment and structure |
|---|
Probab=94.46 E-value=3.3 Score=38.94 Aligned_cols=180 Identities=16% Similarity=0.127 Sum_probs=104.0
Q ss_pred ceEeCcccchhccCChhhHHHHHHHHHcCCceee--c---CCCCCCHHHHH-------hh-CC-CceEEEEeecCCHHHH
Q 017718 73 PIMIAPTAMQKMAHPEGEYATARAASAAGTIMTL--S---SWSTSSVEEVA-------ST-GP-GIRFFQLYVYKDRNVV 138 (367)
Q Consensus 73 Pi~iAPm~~~~l~~~~~e~~~a~aa~~~G~~~~v--s---~~~~~~~e~i~-------~~-~~-~~~~~QLy~~~d~~~~ 138 (367)
|.++.|+.-.+-.+.+.-..+.+-.-+.|+...+ | +..+.+.+|-. +. .. -|.+...- ..+-...
T Consensus 28 ~alvTPf~~dg~iD~~~l~~li~~li~~Gv~Gl~v~GtTGE~~~Ls~~Er~~v~~~~v~~~~grvpViaGvg-~~st~~a 106 (315)
T 3si9_A 28 TALITPFDDNGAIDEKAFCNFVEWQITQGINGVSPVGTTGESPTLTHEEHKRIIELCVEQVAKRVPVVAGAG-SNSTSEA 106 (315)
T ss_dssp EECCCCBCTTSCBCHHHHHHHHHHHHHTTCSEEECSSTTTTGGGSCHHHHHHHHHHHHHHHTTSSCBEEECC-CSSHHHH
T ss_pred EeeECCCCCCCCcCHHHHHHHHHHHHHcCCCEEEeCccccCccccCHHHHHHHHHHHHHHhCCCCcEEEeCC-CCCHHHH
Confidence 5556776433323333334666667778876443 3 23445666522 21 22 46666654 4566777
Q ss_pred HHHHHHHHHcCCcEEEEecCCCCCCchhHHhhhhcCCCCccccccccccccCccccccchhhHHHhhhccCccccHHHHH
Q 017718 139 AQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLTLKNFQGLDLGKMDEANDSGLAAYVAGQIDRSLSWKWLQ 218 (367)
Q Consensus 139 ~~~l~ra~~~G~~ai~itvd~p~~g~r~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~l~ 218 (367)
.++.+.|+++|++++.+. .|.. ...+ ..++.+ .++.|.
T Consensus 107 i~la~~A~~~Gadavlv~--~P~y-----------------~~~~-------------~~~l~~----------~f~~va 144 (315)
T 3si9_A 107 VELAKHAEKAGADAVLVV--TPYY-----------------NRPN-------------QRGLYT----------HFSSIA 144 (315)
T ss_dssp HHHHHHHHHTTCSEEEEE--CCCS-----------------SCCC-------------HHHHHH----------HHHHHH
T ss_pred HHHHHHHHhcCCCEEEEC--CCCC-----------------CCCC-------------HHHHHH----------HHHHHH
Confidence 788999999999999873 2331 0000 001111 124677
Q ss_pred hhcCCCEEEEec-------CCHHHHHHHHH-cC-CcEEEEcCCCCCCCCCccchHHHHHHHHHHhcCCCcEEEecCCCCH
Q 017718 219 TITKLPILVKGV-------LTAEDARIAVQ-AG-AAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRG 289 (367)
Q Consensus 219 ~~~~~Pv~vK~v-------~~~~~a~~~~~-~G-~d~i~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~~~via~GGI~~~ 289 (367)
+.+++||++=.+ .+++...++.+ .. +-+|--+ . ..+..+.++.+..++++.|+ +|. .
T Consensus 145 ~a~~lPiilYn~P~~tg~~l~~~~~~~La~~~pnIvgiKds--s--------gd~~~~~~l~~~~~~~f~v~-~G~---d 210 (315)
T 3si9_A 145 KAISIPIIIYNIPSRSVIDMAVETMRDLCRDFKNIIGVKDA--T--------GKIERASEQREKCGKDFVQL-SGD---D 210 (315)
T ss_dssp HHCSSCEEEEECHHHHSCCCCHHHHHHHHHHCTTEEEEEEC--S--------CCTHHHHHHHHHHCSSSEEE-ESC---G
T ss_pred HcCCCCEEEEeCchhhCCCCCHHHHHHHHhhCCCEEEEEeC--C--------CCHHHHHHHHHHcCCCeEEE-ecC---H
Confidence 778999999875 56788777776 43 2233222 1 12334455555555567664 452 3
Q ss_pred HHHHHHHHcCCCEEEechHH
Q 017718 290 TDVFKALALGASGIFIGRPV 309 (367)
Q Consensus 290 ~dv~kal~lGAd~V~ig~~~ 309 (367)
.-++.++++||+++.-+..-
T Consensus 211 ~~~l~~l~~G~~G~is~~an 230 (315)
T 3si9_A 211 CTALGFNAHGGVGCISVSSN 230 (315)
T ss_dssp GGHHHHHHTTCCEEEESGGG
T ss_pred HHHHHHHHcCCCEEEecHHH
Confidence 44678899999999988743
|
| >3h5d_A DHDPS, dihydrodipicolinate synthase; lysine biosynthesis, amino-ACI biosynthesis, schiff base, cytoplasm, diaminopimelate biosy lyase; HET: MES; 1.99A {Streptococcus pneumoniae} | Back alignment and structure |
|---|
Probab=94.46 E-value=0.11 Score=49.09 Aligned_cols=89 Identities=15% Similarity=0.238 Sum_probs=55.9
Q ss_pred HHHHHHcCCcEEEEcCCCCCCCCCcc-chHHHHHHHHHHhcCCCcEEEecCCCCHHHHHH----HHHcCC-CEEEechHH
Q 017718 236 ARIAVQAGAAGIIVSNHGARQLDYVP-ATIMALEEVVKATQGRIPVFLDGGVRRGTDVFK----ALALGA-SGIFIGRPV 309 (367)
Q Consensus 236 a~~~~~~G~d~i~vs~~gg~~~~~~~-~~~~~l~~i~~~~~~~~~via~GGI~~~~dv~k----al~lGA-d~V~ig~~~ 309 (367)
++.+.+.|+|+|.+.|+.|-...-.. -..+++..+++.+.+++|||+--|=.+-.++++ +-.+|| |++++-.|+
T Consensus 34 v~~li~~Gv~Gl~v~GtTGE~~~Ls~~Er~~v~~~~~~~~~grvpViaGvg~~~t~~ai~la~~A~~~Ga~davlv~~P~ 113 (311)
T 3h5d_A 34 IEHLLAHHTDGILLAGTTAESPTLTHDEELELFAAVQKVVNGRVPLIAGVGTNDTRDSIEFVKEVAEFGGFAAGLAIVPY 113 (311)
T ss_dssp HHHHHHTTCCCEEESSTTTTGGGSCHHHHHHHHHHHHHHSCSSSCEEEECCCSSHHHHHHHHHHHHHSCCCSEEEEECCC
T ss_pred HHHHHHcCCCEEEECccccChhhCCHHHHHHHHHHHHHHhCCCCcEEEeCCCcCHHHHHHHHHHHHhcCCCcEEEEcCCC
Confidence 46678999999999765442111111 123455666666677899999555555666654 334697 999999998
Q ss_pred HHHhhccChHHHHHHHHH
Q 017718 310 VYSLAAEGEKGVRRVLEM 327 (367)
Q Consensus 310 l~~l~~~G~~~v~~~i~~ 327 (367)
.+.. .++++.++++.
T Consensus 114 y~~~---s~~~l~~~f~~ 128 (311)
T 3h5d_A 114 YNKP---SQEGMYQHFKA 128 (311)
T ss_dssp SSCC---CHHHHHHHHHH
T ss_pred CCCC---CHHHHHHHHHH
Confidence 7632 34444444433
|
| >3h5d_A DHDPS, dihydrodipicolinate synthase; lysine biosynthesis, amino-ACI biosynthesis, schiff base, cytoplasm, diaminopimelate biosy lyase; HET: MES; 1.99A {Streptococcus pneumoniae} | Back alignment and structure |
|---|
Probab=94.40 E-value=3.3 Score=38.79 Aligned_cols=182 Identities=16% Similarity=0.140 Sum_probs=107.4
Q ss_pred ceEeCcccchhccCChhhHHHHHHHHHcCCcee--ecC---CCCCCHHHHH-------hhCC--CceEEEEeecCCHHHH
Q 017718 73 PIMIAPTAMQKMAHPEGEYATARAASAAGTIMT--LSS---WSTSSVEEVA-------STGP--GIRFFQLYVYKDRNVV 138 (367)
Q Consensus 73 Pi~iAPm~~~~l~~~~~e~~~a~aa~~~G~~~~--vs~---~~~~~~e~i~-------~~~~--~~~~~QLy~~~d~~~~ 138 (367)
|.++.|+.-.+-.+.++-..+.+-..+.|+... .|| ..+.+.+|-. +... -+.+...- ..+-+..
T Consensus 13 ~a~vTPf~~dg~iD~~~l~~lv~~li~~Gv~Gl~v~GtTGE~~~Ls~~Er~~v~~~~~~~~~grvpViaGvg-~~~t~~a 91 (311)
T 3h5d_A 13 TAFITPFHEDGSINFDAIPALIEHLLAHHTDGILLAGTTAESPTLTHDEELELFAAVQKVVNGRVPLIAGVG-TNDTRDS 91 (311)
T ss_dssp EECCCCBCTTSSBCTTHHHHHHHHHHHTTCCCEEESSTTTTGGGSCHHHHHHHHHHHHHHSCSSSCEEEECC-CSSHHHH
T ss_pred EeeecCCCCCCCcCHHHHHHHHHHHHHcCCCEEEECccccChhhCCHHHHHHHHHHHHHHhCCCCcEEEeCC-CcCHHHH
Confidence 556677754333444555577777778887533 332 3455666522 2222 35666654 3466677
Q ss_pred HHHHHHHHHcCC-cEEEEecCCCCCCchhHHhhhhcCCCCccccccccccccCccccccchhhHHHhhhccCccccHHHH
Q 017718 139 AQLVRRAERAGF-KAIALTVDTPRLGRREADIKNRFTLPPFLTLKNFQGLDLGKMDEANDSGLAAYVAGQIDRSLSWKWL 217 (367)
Q Consensus 139 ~~~l~ra~~~G~-~ai~itvd~p~~g~r~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~l 217 (367)
.++.+.|+++|+ +++.+. .|.. ...+ ..++.+ .++.+
T Consensus 92 i~la~~A~~~Ga~davlv~--~P~y-----------------~~~s-------------~~~l~~----------~f~~v 129 (311)
T 3h5d_A 92 IEFVKEVAEFGGFAAGLAI--VPYY-----------------NKPS-------------QEGMYQ----------HFKAI 129 (311)
T ss_dssp HHHHHHHHHSCCCSEEEEE--CCCS-----------------SCCC-------------HHHHHH----------HHHHH
T ss_pred HHHHHHHHhcCCCcEEEEc--CCCC-----------------CCCC-------------HHHHHH----------HHHHH
Confidence 788999999997 998873 2321 0000 001111 23467
Q ss_pred HhhcCCCEEEEec-------CCHHHHHHHHHcCCcEEEEcCCCCCCCCCccchHHHHHHHHHHhcCCCcEEEecCCCCHH
Q 017718 218 QTITKLPILVKGV-------LTAEDARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGT 290 (367)
Q Consensus 218 ~~~~~~Pv~vK~v-------~~~~~a~~~~~~G~d~i~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~~~via~GGI~~~~ 290 (367)
.+.+++||++=.+ .+++...++.+.. ..+-+ .+.. .+..+.++.+..++++.|+ +|. ..
T Consensus 130 a~a~~lPiilYn~P~~tg~~l~~~~~~~La~~p-nIvgi-------Kdss--d~~~~~~~~~~~~~~f~v~-~G~---d~ 195 (311)
T 3h5d_A 130 ADASDLPIIIYNIPGRVVVELTPETMLRLADHP-NIIGV-------KECT--SLANMAYLIEHKPEEFLIY-TGE---DG 195 (311)
T ss_dssp HHSCSSCEEEEECHHHHSSCCCHHHHHHHHTST-TEEEE-------EECS--CHHHHHHHHHHCCSSCEEE-ECC---GG
T ss_pred HHhCCCCEEEEecccccCCCCCHHHHHHHhcCC-CEEEE-------EeCC--CHHHHHHHHHHcCCCEEEE-ECc---HH
Confidence 7778999998875 5678777777642 22212 1222 4555666666665566555 452 34
Q ss_pred HHHHHHHcCCCEEEechHHHH
Q 017718 291 DVFKALALGASGIFIGRPVVY 311 (367)
Q Consensus 291 dv~kal~lGAd~V~ig~~~l~ 311 (367)
..+.++++||+++.-+..-++
T Consensus 196 ~~l~~l~~Ga~G~is~~an~~ 216 (311)
T 3h5d_A 196 DAFHAMNLGADGVISVASHTN 216 (311)
T ss_dssp GHHHHHHHTCCEEEESTHHHH
T ss_pred HHHHHHHcCCCEEEechhhhC
Confidence 477889999999998886544
|
| >2rdx_A Mandelate racemase/muconate lactonizing enzyme, P; enolase, structural genomics, PSI, protein structu initiative, nysgrc; 2.00A {Roseovarius nubinhibens} | Back alignment and structure |
|---|
Probab=94.37 E-value=0.37 Score=46.47 Aligned_cols=115 Identities=12% Similarity=0.081 Sum_probs=80.0
Q ss_pred CCHHHHHHHHHHHHHcCCcEEEEecCCCCCCchhHHhhhhcCCCCccccccccccccCccccccchhhHHHhhhccCccc
Q 017718 133 KDRNVVAQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLTLKNFQGLDLGKMDEANDSGLAAYVAGQIDRSL 212 (367)
Q Consensus 133 ~d~~~~~~~l~ra~~~G~~ai~itvd~p~~g~r~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~ 212 (367)
.+++.+.+.++++.++||+++-+++++.. |. +.
T Consensus 144 ~~~~~~~~~a~~~~~~Gf~~iKik~g~~~---~~--------------------------------------------~~ 176 (379)
T 2rdx_A 144 RSEAETRAELARHRAAGYRQFQIKVGADW---QS--------------------------------------------DI 176 (379)
T ss_dssp SCSHHHHHHHHHHHHTTCCEEEEECCSCH---HH--------------------------------------------HH
T ss_pred CCHHHHHHHHHHHHHcCCCEEEEeccCCH---HH--------------------------------------------HH
Confidence 56777788888899999999988765310 00 00
Q ss_pred -cHHHHHhhc--CCCEEEEec--CCHHHH----HHHHHcCCcEEEEcCCCCCCCCCccchHHHHHHHHHHhcCCCcEEEe
Q 017718 213 -SWKWLQTIT--KLPILVKGV--LTAEDA----RIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLD 283 (367)
Q Consensus 213 -~~~~l~~~~--~~Pv~vK~v--~~~~~a----~~~~~~G~d~i~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~~~via~ 283 (367)
-.+.+|+.+ ++||.++.- .+.+++ +.+.+.|+ .|- +. -+ .++.+.++++.+ ++||+++
T Consensus 177 e~v~avr~a~g~d~~l~vDan~~~~~~~a~~~~~~l~~~~i-~iE-------~P--~~-~~~~~~~l~~~~--~iPI~~d 243 (379)
T 2rdx_A 177 DRIRACLPLLEPGEKAMADANQGWRVDNAIRLARATRDLDY-ILE-------QP--CR-SYEECQQVRRVA--DQPMKLD 243 (379)
T ss_dssp HHHHHHGGGSCTTCEEEEECTTCSCHHHHHHHHHHTTTSCC-EEE-------CC--SS-SHHHHHHHHTTC--CSCEEEC
T ss_pred HHHHHHHHhcCCCCEEEEECCCCCCHHHHHHHHHHHHhCCe-EEe-------CC--cC-CHHHHHHHHhhC--CCCEEEe
Confidence 123666666 478888754 355554 44556676 542 11 11 677788887655 7999999
Q ss_pred cCCCCHHHHHHHHHcC-CCEEEech
Q 017718 284 GGVRRGTDVFKALALG-ASGIFIGR 307 (367)
Q Consensus 284 GGI~~~~dv~kal~lG-Ad~V~ig~ 307 (367)
+.+.+..++.+++..| +|.|++-.
T Consensus 244 e~i~~~~~~~~~i~~~~~d~v~ik~ 268 (379)
T 2rdx_A 244 ECVTGLHMAQRIVADRGAEICCLKI 268 (379)
T ss_dssp TTCCSHHHHHHHHHHTCCSEEEEET
T ss_pred CCcCCHHHHHHHHHcCCCCEEEEec
Confidence 9999999999999986 89999954
|
| >3eb2_A Putative dihydrodipicolinate synthetase; lysine biosynthesis, pyruvate, TIM barrel, NYSGXRC, PSI2., structural genomics; HET: PGE; 2.04A {Rhodopseudomonas palustris} SCOP: c.1.10.0 | Back alignment and structure |
|---|
Probab=94.36 E-value=3.3 Score=38.57 Aligned_cols=181 Identities=10% Similarity=0.079 Sum_probs=102.7
Q ss_pred ceEeCcccchhccCChhhHHHHHHHHHcCCceee-----cCCCCCCHHHHH-------hh-CC-CceEEEEeecCCHHHH
Q 017718 73 PIMIAPTAMQKMAHPEGEYATARAASAAGTIMTL-----SSWSTSSVEEVA-------ST-GP-GIRFFQLYVYKDRNVV 138 (367)
Q Consensus 73 Pi~iAPm~~~~l~~~~~e~~~a~aa~~~G~~~~v-----s~~~~~~~e~i~-------~~-~~-~~~~~QLy~~~d~~~~ 138 (367)
|.++.|+.-.+-.+.+.-..+.+-.-+.|+...+ |+..+.+.+|-. +. .. -|.+...- ..+-+..
T Consensus 10 ~a~vTPf~~dg~iD~~~l~~lv~~li~~Gv~gl~v~GttGE~~~Ls~~Er~~v~~~~~~~~~grvpviaGvg-~~~t~~a 88 (300)
T 3eb2_A 10 PYLVSPVDAEGRVRADVMGRLCDDLIQAGVHGLTPLGSTGEFAYLGTAQREAVVRATIEAAQRRVPVVAGVA-STSVADA 88 (300)
T ss_dssp EBCCCCBCTTSCBCHHHHHHHHHHHHHTTCSCBBTTSGGGTGGGCCHHHHHHHHHHHHHHHTTSSCBEEEEE-ESSHHHH
T ss_pred EEEeccCCCCCCcCHHHHHHHHHHHHHcCCCEEEECccccCccccCHHHHHHHHHHHHHHhCCCCcEEEeCC-CCCHHHH
Confidence 4556676433323333334566666677875443 334556766532 22 22 35777765 4566677
Q ss_pred HHHHHHHHHcCCcEEEEecCCCCCCchhHHhhhhcCCCCccccccccccccCccccccchhhHHHhhhccCccccHHHHH
Q 017718 139 AQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLTLKNFQGLDLGKMDEANDSGLAAYVAGQIDRSLSWKWLQ 218 (367)
Q Consensus 139 ~~~l~ra~~~G~~ai~itvd~p~~g~r~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~l~ 218 (367)
.++.+.|+++|++++.+.. |.. ...+ ..++.+ .++.+.
T Consensus 89 i~la~~a~~~Gadavlv~~--P~y-----------------~~~~-------------~~~l~~----------~f~~va 126 (300)
T 3eb2_A 89 VAQAKLYEKLGADGILAIL--EAY-----------------FPLK-------------DAQIES----------YFRAIA 126 (300)
T ss_dssp HHHHHHHHHHTCSEEEEEE--CCS-----------------SCCC-------------HHHHHH----------HHHHHH
T ss_pred HHHHHHHHHcCCCEEEEcC--CCC-----------------CCCC-------------HHHHHH----------HHHHHH
Confidence 7899999999999998732 221 0000 001111 124677
Q ss_pred hhcCCCEEEEec-------CCHHHHHHHHHcCCcEEEEcCCCCCCCCCccchHHHHHHHHHHhcCCCcEEEecCCCCHHH
Q 017718 219 TITKLPILVKGV-------LTAEDARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTD 291 (367)
Q Consensus 219 ~~~~~Pv~vK~v-------~~~~~a~~~~~~G~d~i~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~~~via~GGI~~~~d 291 (367)
+.+++||++=.+ .+++...++.+.. ..+-+ .+.. ..+..+.++.+..++++.|+. |.= ..
T Consensus 127 ~a~~lPiilYn~P~~tg~~l~~~~~~~La~~p-nIvgi-------Kdss-gd~~~~~~~~~~~~~~f~v~~-G~d---~~ 193 (300)
T 3eb2_A 127 DAVEIPVVIYTNPQFQRSDLTLDVIARLAEHP-RIRYI-------KDAS-TNTGRLLSIINRCGDALQVFS-ASA---HI 193 (300)
T ss_dssp HHCSSCEEEEECTTTCSSCCCHHHHHHHHTST-TEEEE-------EECS-SBHHHHHHHHHHHGGGSEEEE-CTT---SC
T ss_pred HHCCCCEEEEECccccCCCCCHHHHHHHHcCC-CEEEE-------EcCC-CCHHHHHHHHHHcCCCeEEEe-CcH---HH
Confidence 778999998875 4577777776432 22212 1111 134445555555555666654 421 23
Q ss_pred HHHHHHcCCCEEEechHH
Q 017718 292 VFKALALGASGIFIGRPV 309 (367)
Q Consensus 292 v~kal~lGAd~V~ig~~~ 309 (367)
++.++++||+++.-+..-
T Consensus 194 ~~~~l~~G~~G~is~~an 211 (300)
T 3eb2_A 194 PAAVMLIGGVGWMAGPAC 211 (300)
T ss_dssp HHHHHHTTCCEEEEGGGG
T ss_pred HHHHHhCCCCEEEeChhh
Confidence 577899999999988743
|
| >3daq_A DHDPS, dihydrodipicolinate synthase; lysine biosynthesis, amino-ACI biosynthesis, diaminopimelate biosynthesis, lyase, schiff B; 1.45A {Staphylococcus aureus} SCOP: c.1.10.0 PDB: 3di1_A 3di0_A | Back alignment and structure |
|---|
Probab=94.29 E-value=1.7 Score=40.43 Aligned_cols=179 Identities=18% Similarity=0.182 Sum_probs=103.8
Q ss_pred ceEeCcccchhccCChhhHHHHHHHHHcCCceee--c---CCCCCCHHHHH-------hh-CC-CceEEEEeecCCHHHH
Q 017718 73 PIMIAPTAMQKMAHPEGEYATARAASAAGTIMTL--S---SWSTSSVEEVA-------ST-GP-GIRFFQLYVYKDRNVV 138 (367)
Q Consensus 73 Pi~iAPm~~~~l~~~~~e~~~a~aa~~~G~~~~v--s---~~~~~~~e~i~-------~~-~~-~~~~~QLy~~~d~~~~ 138 (367)
|.++.|+.-. -.+.+.-..+.+-.-+.|+...+ + +..+.+.+|-. +. .. -|.+...- ..+-+..
T Consensus 9 ~a~vTPf~~d-~iD~~~l~~lv~~li~~Gv~gl~v~GttGE~~~Lt~~Er~~v~~~~~~~~~grvpviaGvg-~~~t~~a 86 (292)
T 3daq_A 9 VALTTPFTNN-KVNLEALKAHVNFLLENNAQAIIVNGTTAESPTLTTDEKELILKTVIDLVDKRVPVIAGTG-TNDTEKS 86 (292)
T ss_dssp EECCCCEETT-EECHHHHHHHHHHHHHTTCCEEEESSGGGTGGGSCHHHHHHHHHHHHHHHTTSSCEEEECC-CSCHHHH
T ss_pred EeeecCcCCC-CcCHHHHHHHHHHHHHcCCCEEEECccccccccCCHHHHHHHHHHHHHHhCCCCcEEEeCC-cccHHHH
Confidence 4556676433 33434444666677778875433 3 34556666522 22 22 45666654 3566777
Q ss_pred HHHHHHHHHcCCcEEEEecCCCCCCchhHHhhhhcCCCCccccccccccccCccccccchhhHHHhhhccCccccHHHHH
Q 017718 139 AQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLTLKNFQGLDLGKMDEANDSGLAAYVAGQIDRSLSWKWLQ 218 (367)
Q Consensus 139 ~~~l~ra~~~G~~ai~itvd~p~~g~r~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~l~ 218 (367)
.++.+.|+++|++++.+. .|.. ...+ ..++.+ .++.+.
T Consensus 87 i~la~~a~~~Gadavlv~--~P~y-----------------~~~~-------------~~~l~~----------~f~~ia 124 (292)
T 3daq_A 87 IQASIQAKALGADAIMLI--TPYY-----------------NKTN-------------QRGLVK----------HFEAIA 124 (292)
T ss_dssp HHHHHHHHHHTCSEEEEE--CCCS-----------------SCCC-------------HHHHHH----------HHHHHH
T ss_pred HHHHHHHHHcCCCEEEEC--CCCC-----------------CCCC-------------HHHHHH----------HHHHHH
Confidence 789999999999999873 2321 0000 001111 234676
Q ss_pred hhcCCCEEEEec-------CCHHHHHHHHHcCCcEEEEcCCCCCCCCCccchHHHHHHHHHHhcC-CCcEEEecCCCCHH
Q 017718 219 TITKLPILVKGV-------LTAEDARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQG-RIPVFLDGGVRRGT 290 (367)
Q Consensus 219 ~~~~~Pv~vK~v-------~~~~~a~~~~~~G~d~i~vs~~gg~~~~~~~~~~~~l~~i~~~~~~-~~~via~GGI~~~~ 290 (367)
+.+++||++=.+ .+++...++.+.. ..+-+=... ..+..+.++.+..++ ++.|+ +|. ..
T Consensus 125 ~a~~lPiilYn~P~~tg~~l~~~~~~~La~~p-nivgiK~ss--------gd~~~~~~~~~~~~~~~f~v~-~G~---d~ 191 (292)
T 3daq_A 125 DAVKLPVVLYNVPSRTNMTIEPETVEILSQHP-YIVALKDAT--------NDFEYLEEVKKRIDTNSFALY-SGN---DD 191 (292)
T ss_dssp HHHCSCEEEEECHHHHSCCCCHHHHHHHHTST-TEEEEEECC--------CCHHHHHHHHTTSCTTTSEEE-ESC---GG
T ss_pred HhCCCCEEEEecccccCCCCCHHHHHHHhcCC-CEEEEEeCC--------CCHHHHHHHHHHCCCCCEEEE-ECC---HH
Confidence 778999998875 5678877777643 222221111 134556666655554 56554 343 34
Q ss_pred HHHHHHHcCCCEEEechH
Q 017718 291 DVFKALALGASGIFIGRP 308 (367)
Q Consensus 291 dv~kal~lGAd~V~ig~~ 308 (367)
.++.++++||+++.-+..
T Consensus 192 ~~~~~l~~G~~G~is~~~ 209 (292)
T 3daq_A 192 NVVEYYQRGGQGVISVIA 209 (292)
T ss_dssp GHHHHHHTTCCEEEESGG
T ss_pred HHHHHHhcCCCEEEeCHH
Confidence 477889999999998874
|
| >3iv3_A Tagatose 1,6-diphosphate aldolase 2; TIM barrel, phosphate binding, tagatose-bisphosphate aldolas tagatose-1,6-bisphosphate aldolase; HET: MSE; 1.80A {Streptococcus mutans} PDB: 3mhf_A 3mhg_A 3jrk_A 3kao_A* 3myp_A 3myo_A | Back alignment and structure |
|---|
Probab=94.28 E-value=0.12 Score=49.45 Aligned_cols=106 Identities=19% Similarity=0.202 Sum_probs=62.3
Q ss_pred HHHH--HHcCCcEEEEcCCCCCC----C------CCccchHHHHHHHHHHhcCCCcEE-EecCCCCHHHHHHH----HHc
Q 017718 236 ARIA--VQAGAAGIIVSNHGARQ----L------DYVPATIMALEEVVKATQGRIPVF-LDGGVRRGTDVFKA----LAL 298 (367)
Q Consensus 236 a~~~--~~~G~d~i~vs~~gg~~----~------~~~~~~~~~l~~i~~~~~~~~~vi-a~GGI~~~~dv~ka----l~l 298 (367)
++.+ .+.|+|.+-+--.|-.. + +......+...++.+.. .+|+| .+||+ +.++..+. +..
T Consensus 194 ~R~~~~~elGaDv~Kve~p~~~~~v~g~~~~~~~y~~~ea~~~f~~~~~a~--~~P~v~lsgG~-~~~~fl~~v~~A~~a 270 (332)
T 3iv3_A 194 MKVFSAERFGIDVLKVEVPVNMVYVEGFAEGEVVYSKEEAAQAFREQEAST--DLPYIYLSAGV-SAELFQETLVFAHKA 270 (332)
T ss_dssp HHHHTSGGGCCSEEEECCSSCGGGBTTTCSSCCCBCHHHHHHHHHHHHHTC--SSCEEEECTTC-CHHHHHHHHHHHHHH
T ss_pred HHHHhhcCcCCcEEEEecCCChhhhcccccccccccHHHHHHHHHHHHhcC--CCCEEEECCCC-CHHHHHHHHHHHHHc
Confidence 4555 57799999985333110 1 11112234455655544 79965 69998 56666654 457
Q ss_pred CC--CEEEechHHHHHhhccChHHHHHHHHHHHHHHHHHHHHhCCCChhhhcccc
Q 017718 299 GA--SGIFIGRPVVYSLAAEGEKGVRRVLEMLREEFELAMALSGCRSLKEITRDH 351 (367)
Q Consensus 299 GA--d~V~ig~~~l~~l~~~G~~~v~~~i~~l~~el~~~m~~~G~~si~~l~~~~ 351 (367)
|| .+|.+||.+... ++..+.+.=.+..+.+|.-.|..+|++|+...
T Consensus 271 Ga~f~Gv~~GRnvwq~-------~v~~~~~~~~~~~~~~l~~~g~~~i~~l~~v~ 318 (332)
T 3iv3_A 271 GAKFNGVLCGRATWAG-------SVQVYMEEGKEAARQWLRTSGLQNINELNKVL 318 (332)
T ss_dssp TCCCCEEEECHHHHTT-------HHHHHHHHCHHHHHHHHTTHHHHHHHHHHHHH
T ss_pred CCCcceEEeeHHHHHh-------hhhhhccccHHHHHHHHHHHhHHHHHHHHHHH
Confidence 99 999999977542 22223333234456666666777777766443
|
| >3d0c_A Dihydrodipicolinate synthase; lysine biosynthesis, pyruvate, TIM barrel, NYSGXRC, PSI-2, structural genomics; 1.90A {Oceanobacillus iheyensis HTE831} | Back alignment and structure |
|---|
Probab=94.27 E-value=3.6 Score=38.61 Aligned_cols=178 Identities=15% Similarity=0.140 Sum_probs=99.7
Q ss_pred ceEeCcc-cchhccCChhhHHHHHHHHHcCCceee--c---CCCCCCHHHHH-------hh-CC-CceEEEEeecCCHHH
Q 017718 73 PIMIAPT-AMQKMAHPEGEYATARAASAAGTIMTL--S---SWSTSSVEEVA-------ST-GP-GIRFFQLYVYKDRNV 137 (367)
Q Consensus 73 Pi~iAPm-~~~~l~~~~~e~~~a~aa~~~G~~~~v--s---~~~~~~~e~i~-------~~-~~-~~~~~QLy~~~d~~~ 137 (367)
|.++.|+ .-.+-.+.+.-..+.+-.-+.|+...+ | +..+.+.||-. +. .. -|.+...- . +-+.
T Consensus 17 ~a~vTPF~~~dg~iD~~~l~~lv~~li~~Gv~gl~v~GtTGE~~~Ls~eEr~~vi~~~~~~~~grvpViaGvg-~-st~~ 94 (314)
T 3d0c_A 17 GINIVPFLEGTREIDWKGLDDNVEFLLQNGIEVIVPNGNTGEFYALTIEEAKQVATRVTELVNGRATVVAGIG-Y-SVDT 94 (314)
T ss_dssp ECCCCCBCTTTCCBCHHHHHHHHHHHHHTTCSEECTTSGGGTGGGSCHHHHHHHHHHHHHHHTTSSEEEEEEC-S-SHHH
T ss_pred EeeeccccCCCCCCCHHHHHHHHHHHHHcCCCEEEECcccCChhhCCHHHHHHHHHHHHHHhCCCCeEEecCC-c-CHHH
Confidence 4445665 322223333334666666778876543 2 34556766532 22 22 45666664 3 6666
Q ss_pred HHHHHHHHHHcCCcEEEEecCCCCCCchhHHhhhhcCCCCccccccccccccCccccccchhhHHHhhhccCccccHHHH
Q 017718 138 VAQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLTLKNFQGLDLGKMDEANDSGLAAYVAGQIDRSLSWKWL 217 (367)
Q Consensus 138 ~~~~l~ra~~~G~~ai~itvd~p~~g~r~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~l 217 (367)
..++.+.|+++|++++.+. .|.. ...+ ..++.+ .++.+
T Consensus 95 ai~la~~A~~~Gadavlv~--~P~y-----------------~~~s-------------~~~l~~----------~f~~v 132 (314)
T 3d0c_A 95 AIELGKSAIDSGADCVMIH--QPVH-----------------PYIT-------------DAGAVE----------YYRNI 132 (314)
T ss_dssp HHHHHHHHHHTTCSEEEEC--CCCC-----------------SCCC-------------HHHHHH----------HHHHH
T ss_pred HHHHHHHHHHcCCCEEEEC--CCCC-----------------CCCC-------------HHHHHH----------HHHHH
Confidence 7788999999999999873 3321 0000 001111 22466
Q ss_pred HhhcCCCEEEEe---cCCHHHHHHHHHcC-CcEEEEcCCCCCCCCCccchHHHHHHHHHHhcC--CCcEEEecCCCCHH-
Q 017718 218 QTITKLPILVKG---VLTAEDARIAVQAG-AAGIIVSNHGARQLDYVPATIMALEEVVKATQG--RIPVFLDGGVRRGT- 290 (367)
Q Consensus 218 ~~~~~~Pv~vK~---v~~~~~a~~~~~~G-~d~i~vs~~gg~~~~~~~~~~~~l~~i~~~~~~--~~~via~GGI~~~~- 290 (367)
.+.+++||++=. +.+++...++.+.. +-+|--+ . ..+..+.++.+..++ ++.| .+| +..
T Consensus 133 a~a~~lPiilYn~tg~l~~~~~~~La~~pnIvgiKds--s--------gd~~~~~~~~~~~~~~~~f~v-~~G---~d~~ 198 (314)
T 3d0c_A 133 IEALDAPSIIYFKDAHLSDDVIKELAPLDKLVGIKYA--I--------NDIQRVTQVMRAVPKSSNVAF-ICG---TAEK 198 (314)
T ss_dssp HHHSSSCEEEEECCTTSCTHHHHHHTTCTTEEEEEEC--C--------CCHHHHHHHHHHSCGGGCCEE-EET---THHH
T ss_pred HHhCCCCEEEEeCCCCcCHHHHHHHHcCCCEEEEEeC--C--------CCHHHHHHHHHhcCCCCCEEE-EEe---CcHH
Confidence 677899999854 25667776665432 2222221 1 134455566655544 5555 445 234
Q ss_pred HHHHHHHcCCCEEEechH
Q 017718 291 DVFKALALGASGIFIGRP 308 (367)
Q Consensus 291 dv~kal~lGAd~V~ig~~ 308 (367)
.++.++.+||+++.-+..
T Consensus 199 ~~~~~l~~G~~G~is~~a 216 (314)
T 3d0c_A 199 WAPFFYHAGAVGFTSGLV 216 (314)
T ss_dssp HHHHHHHHTCCEEEESGG
T ss_pred HHHHHHHcCCCEEEecHH
Confidence 578889999999998874
|
| >2qgy_A Enolase from the environmental genome shotgun sequencing of the sargasso SEA; structural genomics, unknown function, PSI-2; 1.80A {Environmental sample} | Back alignment and structure |
|---|
Probab=94.20 E-value=0.51 Score=45.77 Aligned_cols=118 Identities=12% Similarity=0.016 Sum_probs=82.6
Q ss_pred CCHHHHHHHHHHHHHcCCcEEEEecCCCCCCchhHHhhhhcCCCCccccccccccccCccccccchhhHHHhhhccCccc
Q 017718 133 KDRNVVAQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLTLKNFQGLDLGKMDEANDSGLAAYVAGQIDRSL 212 (367)
Q Consensus 133 ~d~~~~~~~l~ra~~~G~~ai~itvd~p~~g~r~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~ 212 (367)
.+++.+.+.++++.+.||+++-+.+.... .+ .+.
T Consensus 148 ~~~~~~~~~a~~~~~~Gf~~vKik~g~~~--~~--------------------------------------------~~~ 181 (391)
T 2qgy_A 148 KDTNDYLRQIEKFYGKKYGGIKIYPMLDS--LS--------------------------------------------ISI 181 (391)
T ss_dssp CCHHHHHHHHHHHHHTTCSCEEECCCCSS--HH--------------------------------------------HHH
T ss_pred CCHHHHHHHHHHHHHcCCCEEEEccCCCh--HH--------------------------------------------HHH
Confidence 57787888888888999998877543100 00 001
Q ss_pred -cHHHHHhhc--CCCEEEEec--CCHHH----HHHHHHcCCcEEEEcCCCCCCCCCccchHHHHHHHHHHhcCCCcEEEe
Q 017718 213 -SWKWLQTIT--KLPILVKGV--LTAED----ARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLD 283 (367)
Q Consensus 213 -~~~~l~~~~--~~Pv~vK~v--~~~~~----a~~~~~~G~d~i~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~~~via~ 283 (367)
..+.+|+.+ ++||.++.- .+.++ ++.+.+.|++.|-- ...+..++.+.++++.+ ++||+++
T Consensus 182 e~v~avR~a~G~d~~l~vDan~~~~~~~a~~~~~~l~~~~i~~iEq--------P~~~~d~~~~~~l~~~~--~iPIa~d 251 (391)
T 2qgy_A 182 QFVEKVREIVGDELPLMLDLAVPEDLDQTKSFLKEVSSFNPYWIEE--------PVDGENISLLTEIKNTF--NMKVVTG 251 (391)
T ss_dssp HHHHHHHHHHCSSSCEEEECCCCSCHHHHHHHHHHHGGGCCSEEEC--------SSCTTCHHHHHHHHHHC--SSCEEEC
T ss_pred HHHHHHHHHhCCCCEEEEEcCCCCCHHHHHHHHHHHHhcCCCeEeC--------CCChhhHHHHHHHHhhC--CCCEEEc
Confidence 123666665 588888754 35554 45667788887642 01234677888888776 7999999
Q ss_pred cCCCCHHHHHHHHHcC-CCEEEec
Q 017718 284 GGVRRGTDVFKALALG-ASGIFIG 306 (367)
Q Consensus 284 GGI~~~~dv~kal~lG-Ad~V~ig 306 (367)
+.+.+..++.+++..| +|.|++-
T Consensus 252 E~~~~~~~~~~~i~~~~~d~v~ik 275 (391)
T 2qgy_A 252 EKQSGLVHFRELISRNAADIFNPD 275 (391)
T ss_dssp TTCCSHHHHHHHHHTTCCSEECCB
T ss_pred CCcCCHHHHHHHHHcCCCCEEEEC
Confidence 9999999999999987 8999984
|
| >2v9d_A YAGE; dihydrodipicolinic acid synthase, N-acetyl neuraminate lyase, NAL, lyase, DHDPS, prophage; 2.15A {Escherichia coli} PDB: 2v8z_A 3nev_A* 3n2x_A* | Back alignment and structure |
|---|
Probab=94.18 E-value=4 Score=38.83 Aligned_cols=180 Identities=17% Similarity=0.197 Sum_probs=101.3
Q ss_pred cceEeCcccchhccCChhhHHHHHHHHHcCCcee--ecC---CCCCCHHHHH-------hh-CC-CceEEEEeecCCHHH
Q 017718 72 MPIMIAPTAMQKMAHPEGEYATARAASAAGTIMT--LSS---WSTSSVEEVA-------ST-GP-GIRFFQLYVYKDRNV 137 (367)
Q Consensus 72 ~Pi~iAPm~~~~l~~~~~e~~~a~aa~~~G~~~~--vs~---~~~~~~e~i~-------~~-~~-~~~~~QLy~~~d~~~ 137 (367)
.|.++.|+.-.+-.+.+.-..+.+-..+.|+... .+| ..+.+.||-. +. .. -|.+...- ..+-+.
T Consensus 36 ~~alvTPF~~dg~ID~~~l~~lv~~li~~Gv~Gl~v~GtTGE~~~Ls~eEr~~vi~~~ve~~~grvpViaGvg-~~st~e 114 (343)
T 2v9d_A 36 IPPVSTIFTADGQLDKPGTAALIDDLIKAGVDGLFFLGSGGEFSQLGAEERKAIARFAIDHVDRRVPVLIGTG-GTNARE 114 (343)
T ss_dssp CCEECCCBCTTSSBCHHHHHHHHHHHHHTTCSCEEESSTTTTGGGSCHHHHHHHHHHHHHHHTTSSCEEEECC-SSCHHH
T ss_pred EEeeECCCCCCCCcCHHHHHHHHHHHHHcCCCEEEeCccccChhhCCHHHHHHHHHHHHHHhCCCCcEEEecC-CCCHHH
Confidence 4566777743332333333456666667787533 333 3456666522 22 22 35666654 346666
Q ss_pred HHHHHHHHHHcCCcEEEEecCCCCCCchhHHhhhhcCCCCccccccccccccCccccccchhhHHHhhhccCccccHHHH
Q 017718 138 VAQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLTLKNFQGLDLGKMDEANDSGLAAYVAGQIDRSLSWKWL 217 (367)
Q Consensus 138 ~~~~l~ra~~~G~~ai~itvd~p~~g~r~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~l 217 (367)
..++.+.|+++|++++.+. .|.. ...+ ..++.+ .++.|
T Consensus 115 ai~la~~A~~~Gadavlv~--~P~Y-----------------~~~s-------------~~~l~~----------~f~~V 152 (343)
T 2v9d_A 115 TIELSQHAQQAGADGIVVI--NPYY-----------------WKVS-------------EANLIR----------YFEQV 152 (343)
T ss_dssp HHHHHHHHHHHTCSEEEEE--CCSS-----------------SCCC-------------HHHHHH----------HHHHH
T ss_pred HHHHHHHHHhcCCCEEEEC--CCCC-----------------CCCC-------------HHHHHH----------HHHHH
Confidence 7788999999999999874 2331 0000 001111 22366
Q ss_pred HhhcCCCEEEEec-------CCHHHHHHHH-HcC-CcEEEEcCCCCCCCCCccchHHHHHHHHHHhc---CCCcEEEecC
Q 017718 218 QTITKLPILVKGV-------LTAEDARIAV-QAG-AAGIIVSNHGARQLDYVPATIMALEEVVKATQ---GRIPVFLDGG 285 (367)
Q Consensus 218 ~~~~~~Pv~vK~v-------~~~~~a~~~~-~~G-~d~i~vs~~gg~~~~~~~~~~~~l~~i~~~~~---~~~~via~GG 285 (367)
.+.+++||++=.+ .+++...++. +.. +-+|.-+ . ..+..+.++.+..+ +++.|+ +|
T Consensus 153 A~a~~lPiilYn~P~~tg~~l~~e~~~~La~~~pnIvgiKds--s--------gd~~~~~~l~~~~~~~~~~f~v~-~G- 220 (343)
T 2v9d_A 153 ADSVTLPVMLYNFPALTGQDLTPALVKTLADSRSNIIGIKDT--I--------DSVAHLRSMIHTVKGAHPHFTVL-CG- 220 (343)
T ss_dssp HHTCSSCEEEEECHHHHSSCCCHHHHHHHHHHCTTEEEEEEC--C--------SCHHHHHHHHHHHHHHCTTCEEE-ES-
T ss_pred HHhcCCCEEEEeCchhcCcCCCHHHHHHHHHhCCCEEEEEeC--C--------CCHHHHHHHHHhcCCCCCCEEEE-EC-
Confidence 6778999998765 5678777776 542 2222221 1 12334445544443 456554 45
Q ss_pred CCCHHHHHHHHHcCCCEEEechH
Q 017718 286 VRRGTDVFKALALGASGIFIGRP 308 (367)
Q Consensus 286 I~~~~dv~kal~lGAd~V~ig~~ 308 (367)
+...++.++.+||+++.-+..
T Consensus 221 --~D~~~l~~l~~Ga~G~is~~a 241 (343)
T 2v9d_A 221 --YDDHLFNTLLLGGDGAISASG 241 (343)
T ss_dssp --SGGGHHHHHHTTCCEECCGGG
T ss_pred --cHHHHHHHHHCCCCEEEeCHH
Confidence 234577889999999988874
|
| >3ldv_A Orotidine 5'-phosphate decarboxylase; structural genomics, infectious diseases; 1.77A {Vibrio cholerae o1 biovar el tor} PDB: 3uwq_A* | Back alignment and structure |
|---|
Probab=94.18 E-value=0.14 Score=47.18 Aligned_cols=79 Identities=22% Similarity=0.349 Sum_probs=52.0
Q ss_pred HHHHHHHHcCCcEEEEcCCCCCCCCCccchHHHHHHHHHHhcCCCcEEEecCCCCH-HH---------HHHHHHcCCCEE
Q 017718 234 EDARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRG-TD---------VFKALALGASGI 303 (367)
Q Consensus 234 ~~a~~~~~~G~d~i~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~~~via~GGI~~~-~d---------v~kal~lGAd~V 303 (367)
+-|+.+.++|++|+++|. .-+..+++.++... ++...||+-. .+ ..+++..|||.+
T Consensus 166 ~~A~~a~~aG~~GvV~sa-------------~e~~~iR~~~g~~f-l~VtPGIr~qg~~~~dQ~Rv~t~~~a~~aGad~i 231 (255)
T 3ldv_A 166 RLATLTKNAGLDGVVCSA-------------QEASLLKQHLGREF-KLVTPGIRPAGSEQGDQRRIMTPAQAIASGSDYL 231 (255)
T ss_dssp HHHHHHHHTTCSEEECCH-------------HHHHHHHHHHCTTS-EEEEECCCCTTSTTSSCSSSCCHHHHHHTTCSEE
T ss_pred HHHHHHHHcCCCEEEECH-------------HHHHHHHHhcCCCc-EEEeCCcccCcCCccceeccCCHHHHHHcCCCEE
Confidence 346677889999999842 13455666665444 6677888742 23 567888999999
Q ss_pred EechHHHHHhhccChHHHHHHHHHHHHHH
Q 017718 304 FIGRPVVYSLAAEGEKGVRRVLEMLREEF 332 (367)
Q Consensus 304 ~ig~~~l~~l~~~G~~~v~~~i~~l~~el 332 (367)
.+||++..+ ..+ ...++.+++|+
T Consensus 232 VvGr~I~~a---~dp---~~a~~~i~~ei 254 (255)
T 3ldv_A 232 VIGRPITQA---AHP---EVVLEEINSSL 254 (255)
T ss_dssp EECHHHHTC---SCH---HHHHHHHHHHC
T ss_pred EECHHHhCC---CCH---HHHHHHHHHhh
Confidence 999998642 222 23556666654
|
| >3dz1_A Dihydrodipicolinate synthase; lysine biosynthesis, pyruvate, TIM barrel, NYSGXRC, PSI2, structural genomics; 1.87A {Rhodopseudomonas palustris} SCOP: c.1.10.0 | Back alignment and structure |
|---|
Probab=94.15 E-value=0.21 Score=47.24 Aligned_cols=91 Identities=12% Similarity=0.173 Sum_probs=57.2
Q ss_pred HHHHHHcCCcEEEEcCCCCCCCCCcc-chHHHHHHHHHHhcCCCcEEEecCCCCHHHHHH----HHHcCCCEEEechHHH
Q 017718 236 ARIAVQAGAAGIIVSNHGARQLDYVP-ATIMALEEVVKATQGRIPVFLDGGVRRGTDVFK----ALALGASGIFIGRPVV 310 (367)
Q Consensus 236 a~~~~~~G~d~i~vs~~gg~~~~~~~-~~~~~l~~i~~~~~~~~~via~GGI~~~~dv~k----al~lGAd~V~ig~~~l 310 (367)
++.+++.|+|+|++.|+.|-...-.. -..+++..+++.+ +++|||+--|=.+-.++++ +-.+|||++++-.|+
T Consensus 35 v~~li~~Gv~Gl~v~GtTGE~~~Lt~~Er~~v~~~~v~~~-grvpViaGvg~~~t~~ai~la~~A~~~Gadavlv~~P~- 112 (313)
T 3dz1_A 35 TDFYAEVGCEGVTVLGILGEAPKLDAAEAEAVATRFIKRA-KSMQVIVGVSAPGFAAMRRLARLSMDAGAAGVMIAPPP- 112 (313)
T ss_dssp HHHHHHTTCSEEEESTGGGTGGGSCHHHHHHHHHHHHHHC-TTSEEEEECCCSSHHHHHHHHHHHHHHTCSEEEECCCT-
T ss_pred HHHHHHCCCCEEEeCccCcChhhCCHHHHHHHHHHHHHHc-CCCcEEEecCCCCHHHHHHHHHHHHHcCCCEEEECCCC-
Confidence 45678899999999665442111111 1334566666777 7999998555455555553 334799999999998
Q ss_pred HHhhccChHHHHHHHHHHHHH
Q 017718 311 YSLAAEGEKGVRRVLEMLREE 331 (367)
Q Consensus 311 ~~l~~~G~~~v~~~i~~l~~e 331 (367)
+. ..++++.++++.+.+.
T Consensus 113 ~~---~s~~~l~~~f~~va~a 130 (313)
T 3dz1_A 113 SL---RTDEQITTYFRQATEA 130 (313)
T ss_dssp TC---CSHHHHHHHHHHHHHH
T ss_pred CC---CCHHHHHHHHHHHHHh
Confidence 42 2456665555555443
|
| >2og9_A Mandelate racemase/muconate lactonizing enzyme; NYSGXRC, protein structure initiative (PSI) II, PSI-2, 9382A mandelate racemase; 1.90A {Polaromonas SP} PDB: 3cb3_A* | Back alignment and structure |
|---|
Probab=94.13 E-value=0.6 Score=45.30 Aligned_cols=118 Identities=10% Similarity=0.015 Sum_probs=82.1
Q ss_pred CHHHHHHHHHHHHHcCCcEEEEecCCCCCCchhHHhhhhcCCCCccccccccccccCccccccchhhHHHhhhccCccc-
Q 017718 134 DRNVVAQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLTLKNFQGLDLGKMDEANDSGLAAYVAGQIDRSL- 212 (367)
Q Consensus 134 d~~~~~~~l~ra~~~G~~ai~itvd~p~~g~r~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~- 212 (367)
+++.+.+.++++.++||+++=+.++.+- . +.+.
T Consensus 162 ~~e~~~~~a~~~~~~Gf~~vKik~g~~~-------~---------------------------------------~~~~e 195 (393)
T 2og9_A 162 PIDQLMVNASASIERGIGGIKLKVGQPD-------G---------------------------------------ALDIA 195 (393)
T ss_dssp CHHHHHHHHHHHHHTTCCCEEEECCCSC-------H---------------------------------------HHHHH
T ss_pred CHHHHHHHHHHHHHcCCCEEEEecCCCC-------H---------------------------------------HHHHH
Confidence 6777778888888999999877654210 0 0000
Q ss_pred cHHHHHhhc--CCCEEEEec--CCHHH----HHHHHHcCCcEEEEcCCCCCCCCCccchHHHHHHHHHHhcCCCcEEEec
Q 017718 213 SWKWLQTIT--KLPILVKGV--LTAED----ARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDG 284 (367)
Q Consensus 213 ~~~~l~~~~--~~Pv~vK~v--~~~~~----a~~~~~~G~d~i~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~~~via~G 284 (367)
..+.+|+.+ +++|.+..- .+.++ ++.+.+.|++.|-- ...+..++.+.++++.+ ++||++++
T Consensus 196 ~v~avR~avg~d~~l~vDan~~~~~~~a~~~~~~l~~~~i~~iE~--------P~~~~~~~~~~~l~~~~--~iPIa~dE 265 (393)
T 2og9_A 196 RVTAVRKHLGDAVPLMVDANQQWDRPTAQRMCRIFEPFNLVWIEE--------PLDAYDHEGHAALALQF--DTPIATGE 265 (393)
T ss_dssp HHHHHHHHHCTTSCEEEECTTCCCHHHHHHHHHHHGGGCCSCEEC--------CSCTTCHHHHHHHHHHC--SSCEEECT
T ss_pred HHHHHHHHcCCCCEEEEECCCCCCHHHHHHHHHHHHhhCCCEEEC--------CCCcccHHHHHHHHHhC--CCCEEeCC
Confidence 123666665 578888743 35555 45566778887641 11234677788888776 79999999
Q ss_pred CCCCHHHHHHHHHcC-CCEEEech
Q 017718 285 GVRRGTDVFKALALG-ASGIFIGR 307 (367)
Q Consensus 285 GI~~~~dv~kal~lG-Ad~V~ig~ 307 (367)
.+.+..++.+++..| +|.|++--
T Consensus 266 ~~~~~~~~~~~i~~~~~d~v~ik~ 289 (393)
T 2og9_A 266 MLTSAAEHGDLIRHRAADYLMPDA 289 (393)
T ss_dssp TCCSHHHHHHHHHTTCCSEECCCH
T ss_pred CcCCHHHHHHHHHCCCCCEEeeCc
Confidence 999999999999987 89998864
|
| >4adt_A Pyridoxine biosynthetic enzyme PDX1 homologue, PU; transferase, pyridoxal 5-phosphate biosynthesis; 2.42A {Plasmodium berghei} PDB: 4adu_A* 4ads_A | Back alignment and structure |
|---|
Probab=94.06 E-value=0.15 Score=47.97 Aligned_cols=82 Identities=20% Similarity=0.192 Sum_probs=59.5
Q ss_pred hhcCCCEEEEecCCHHHHHHHHHcCCcEEEEcCCCCC--CCCCc---cchHHHHHHHHHHhcCCCcEEEecCCCCHHHHH
Q 017718 219 TITKLPILVKGVLTAEDARIAVQAGAAGIIVSNHGAR--QLDYV---PATIMALEEVVKATQGRIPVFLDGGVRRGTDVF 293 (367)
Q Consensus 219 ~~~~~Pv~vK~v~~~~~a~~~~~~G~d~i~vs~~gg~--~~~~~---~~~~~~l~~i~~~~~~~~~via~GGI~~~~dv~ 293 (367)
+..+.-| +..+.+++.|+...++||+.|.+--..-+ ...+| ....+.|.++++.+ .+||++-+++..-.++.
T Consensus 18 ~~~kggv-~~d~~~~e~A~~ye~~GA~~lsvLe~~~~Di~~~~g~~R~~~~~~i~~i~~~v--~iPvl~k~~i~~ide~q 94 (297)
T 4adt_A 18 EMLKGGV-IMDVKNVEQAKIAEKAGAIGVMILENIPSELRNTDGVARSVDPLKIEEIRKCI--SINVLAKVRIGHFVEAQ 94 (297)
T ss_dssp HTTTTCE-EEEESSHHHHHHHHHHTCSEEEECCCCC-----CCCCCCCCCHHHHHHHHTTC--CSEEEEEEETTCHHHHH
T ss_pred HHhcCCc-ccCCCcHHHHHHHHHcCCCEEEEecCCCCcchhcCCcccCCCHHHHHHHHHhc--CCCEEEeccCCcHHHHH
Confidence 3334344 45778899999999999999988521110 01111 24678888888877 89999998888877777
Q ss_pred HHHHcCCCEE
Q 017718 294 KALALGASGI 303 (367)
Q Consensus 294 kal~lGAd~V 303 (367)
.+.++|||.|
T Consensus 95 il~aaGAD~I 104 (297)
T 4adt_A 95 ILEELKVDML 104 (297)
T ss_dssp HHHHTTCSEE
T ss_pred HHHHcCCCEE
Confidence 7788999999
|
| >3eb2_A Putative dihydrodipicolinate synthetase; lysine biosynthesis, pyruvate, TIM barrel, NYSGXRC, PSI2., structural genomics; HET: PGE; 2.04A {Rhodopseudomonas palustris} SCOP: c.1.10.0 | Back alignment and structure |
|---|
Probab=94.04 E-value=0.046 Score=51.44 Aligned_cols=90 Identities=18% Similarity=0.208 Sum_probs=55.2
Q ss_pred HHHHHHcCCcEEEEcCCCCCCCCCc-cchHHHHHHHHHHhcCCCcEEEecCCCCHHHHHH----HHHcCCCEEEechHHH
Q 017718 236 ARIAVQAGAAGIIVSNHGARQLDYV-PATIMALEEVVKATQGRIPVFLDGGVRRGTDVFK----ALALGASGIFIGRPVV 310 (367)
Q Consensus 236 a~~~~~~G~d~i~vs~~gg~~~~~~-~~~~~~l~~i~~~~~~~~~via~GGI~~~~dv~k----al~lGAd~V~ig~~~l 310 (367)
++.+++.|+|+|++.|+.|-...-. .-..+++..+++.+++++|||+--|=.+-.++++ +-.+|||++++..|+.
T Consensus 31 v~~li~~Gv~gl~v~GttGE~~~Ls~~Er~~v~~~~~~~~~grvpviaGvg~~~t~~ai~la~~a~~~Gadavlv~~P~y 110 (300)
T 3eb2_A 31 CDDLIQAGVHGLTPLGSTGEFAYLGTAQREAVVRATIEAAQRRVPVVAGVASTSVADAVAQAKLYEKLGADGILAILEAY 110 (300)
T ss_dssp HHHHHHTTCSCBBTTSGGGTGGGCCHHHHHHHHHHHHHHHTTSSCBEEEEEESSHHHHHHHHHHHHHHTCSEEEEEECCS
T ss_pred HHHHHHcCCCEEEECccccCccccCHHHHHHHHHHHHHHhCCCCcEEEeCCCCCHHHHHHHHHHHHHcCCCEEEEcCCCC
Confidence 4567889999999866544211111 1133456666666777899998444444555443 3347999999999987
Q ss_pred HHhhccChHHHHHHHHHH
Q 017718 311 YSLAAEGEKGVRRVLEML 328 (367)
Q Consensus 311 ~~l~~~G~~~v~~~i~~l 328 (367)
+.. .++++.++++.+
T Consensus 111 ~~~---~~~~l~~~f~~v 125 (300)
T 3eb2_A 111 FPL---KDAQIESYFRAI 125 (300)
T ss_dssp SCC---CHHHHHHHHHHH
T ss_pred CCC---CHHHHHHHHHHH
Confidence 642 345544444443
|
| >4dpp_A DHDPS 2, dihydrodipicolinate synthase 2, chloroplastic; amino-acid biosynthesis, (S)-lysine biosynthesis VIA DAP PAT (beta/alpha)8-barrel; 2.00A {Arabidopsis thaliana} PDB: 4dpq_A* 3tuu_A* | Back alignment and structure |
|---|
Probab=93.98 E-value=0.12 Score=50.01 Aligned_cols=89 Identities=20% Similarity=0.254 Sum_probs=55.0
Q ss_pred HHHHHHcCCcEEEEcCCCCCCCCCcc-chHHHHHHHHHHhcCCCcEEEecCCCCHHHHHH----HHHcCCCEEEechHHH
Q 017718 236 ARIAVQAGAAGIIVSNHGARQLDYVP-ATIMALEEVVKATQGRIPVFLDGGVRRGTDVFK----ALALGASGIFIGRPVV 310 (367)
Q Consensus 236 a~~~~~~G~d~i~vs~~gg~~~~~~~-~~~~~l~~i~~~~~~~~~via~GGI~~~~dv~k----al~lGAd~V~ig~~~l 310 (367)
++.+++.|+|+|++.|+.|-...-.. -..+++..+++.+.+++|||+--|=.+-.++++ +-.+|||++++-.|+.
T Consensus 86 v~~li~~Gv~Gl~v~GTTGE~~~Ls~eEr~~vi~~~ve~~~grvpViaGvg~~st~eai~la~~A~~~Gadavlvv~PyY 165 (360)
T 4dpp_A 86 VNIQIQNGAEGVIVGGTTGEGQLMSWDEHIMLIGHTVNCFGGSIKVIGNTGSNSTREAIHATEQGFAVGMHAALHINPYY 165 (360)
T ss_dssp HHHHHHTTCCEEEESSTTTTGGGSCHHHHHHHHHHHHHHHTTTSEEEEECCCSSHHHHHHHHHHHHHTTCSEEEEECCCS
T ss_pred HHHHHHcCCCEEEecccccChhhCCHHHHHHHHHHHHHHhCCCCeEEEecCCCCHHHHHHHHHHHHHcCCCEEEEcCCCC
Confidence 56678999999999665442111111 123455666666777999998445445555553 3347999999999976
Q ss_pred HHhhccChHHHHHHHHH
Q 017718 311 YSLAAEGEKGVRRVLEM 327 (367)
Q Consensus 311 ~~l~~~G~~~v~~~i~~ 327 (367)
+. -.++++.++++.
T Consensus 166 ~k---~sq~gl~~hf~~ 179 (360)
T 4dpp_A 166 GK---TSIEGLIAHFQS 179 (360)
T ss_dssp SC---CCHHHHHHHHHT
T ss_pred CC---CCHHHHHHHHHH
Confidence 43 234554444443
|
| >2ojp_A DHDPS, dihydrodipicolinate synthase; dimer, lysine biosynthe lyase; HET: KGC GOL; 1.70A {Escherichia coli} PDB: 1yxc_A 1dhp_A 1yxd_A* 2ats_A* 3du0_A* 3c0j_A* 3ubs_A* 4eou_A* 3i7q_A* 3i7r_A* 3i7s_A* 2pur_A* 1s5v_A 1s5w_A 1s5t_A 3den_A* 2a6l_A 2a6n_A 3g0s_A | Back alignment and structure |
|---|
Probab=93.94 E-value=1.6 Score=40.57 Aligned_cols=181 Identities=14% Similarity=0.144 Sum_probs=99.4
Q ss_pred ceEeCcccchhccCChhhHHHHHHHHHcCCceee--cC---CCCCCHHHHH-------hh-CC-CceEEEEeecCCHHHH
Q 017718 73 PIMIAPTAMQKMAHPEGEYATARAASAAGTIMTL--SS---WSTSSVEEVA-------ST-GP-GIRFFQLYVYKDRNVV 138 (367)
Q Consensus 73 Pi~iAPm~~~~l~~~~~e~~~a~aa~~~G~~~~v--s~---~~~~~~e~i~-------~~-~~-~~~~~QLy~~~d~~~~ 138 (367)
|.++.|+.-.+-.+.+.-..+.+-.-+.|+...+ || ..+.+.||-. +. .. -|.+...- ..+-+..
T Consensus 7 ~a~vTPf~~dg~iD~~~l~~lv~~li~~Gv~gl~~~GttGE~~~Ls~~Er~~v~~~~~~~~~gr~pviaGvg-~~~t~~a 85 (292)
T 2ojp_A 7 VAIVTPMDEKGNVCRASLKKLIDYHVASGTSAIVSVGTTGESATLNHDEHADVVMMTLDLADGRIPVIAGTG-ANATAEA 85 (292)
T ss_dssp EECCCCBCTTSCBCHHHHHHHHHHHHHHTCCEEEESSTTTTGGGSCHHHHHHHHHHHHHHHTTSSCEEEECC-CSSHHHH
T ss_pred eeeeccCCCCCCcCHHHHHHHHHHHHHcCCCEEEECccccchhhCCHHHHHHHHHHHHHHhCCCCcEEEecC-CccHHHH
Confidence 4456676432223333334566666677875443 32 3456666522 22 22 35666654 3455666
Q ss_pred HHHHHHHHHcCCcEEEEecCCCCCCchhHHhhhhcCCCCccccccccccccCccccccchhhHHHhhhccCccccHHHHH
Q 017718 139 AQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLTLKNFQGLDLGKMDEANDSGLAAYVAGQIDRSLSWKWLQ 218 (367)
Q Consensus 139 ~~~l~ra~~~G~~ai~itvd~p~~g~r~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~l~ 218 (367)
.++.+.|+++|++++.+. .|.. ...+ ..++.+ .++.+.
T Consensus 86 i~la~~a~~~Gadavlv~--~P~y-----------------~~~s-------------~~~l~~----------~f~~ia 123 (292)
T 2ojp_A 86 ISLTQRFNDSGIVGCLTV--TPYY-----------------NRPS-------------QEGLYQ----------HFKAIA 123 (292)
T ss_dssp HHHHHHTTTSSCSEEEEE--CCCS-----------------SCCC-------------HHHHHH----------HHHHHH
T ss_pred HHHHHHHHhcCCCEEEEC--CCCC-----------------CCCC-------------HHHHHH----------HHHHHH
Confidence 778888999999999873 2321 0000 001111 224666
Q ss_pred hhcCCCEEEEec-------CCHHHHHHHHHcCCcEEEEcCCCCCCCCCccchHHHHHHHHHHhcCCCcEEEecCCCCHHH
Q 017718 219 TITKLPILVKGV-------LTAEDARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTD 291 (367)
Q Consensus 219 ~~~~~Pv~vK~v-------~~~~~a~~~~~~G~d~i~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~~~via~GGI~~~~d 291 (367)
+.+++||++=.+ .+++...++.+. ..|+-- .+.. ..+..+.++.+..++++.|+ +| +...
T Consensus 124 ~a~~lPiilYn~P~~tg~~l~~~~~~~La~~--pnivgi------K~s~-gd~~~~~~~~~~~~~~f~v~-~G---~d~~ 190 (292)
T 2ojp_A 124 EHTDLPQILYNVPSRTGCDLLPETVGRLAKV--KNIIGI------XEAT-GNLTRVNQIKELVSDDFVLL-SG---DDAS 190 (292)
T ss_dssp TTCSSCEEEECCHHHHSCCCCHHHHHHHHTS--TTEEEC-------CCS-CCTHHHHHHHTTSCTTSBCE-ES---CGGG
T ss_pred HhcCCCEEEEeCcchhccCCCHHHHHHHHcC--CCEEEE------eCCC-CCHHHHHHHHHhcCCCEEEE-EC---cHHH
Confidence 778999998764 567877777654 333210 1111 12334445554444456554 44 2344
Q ss_pred HHHHHHcCCCEEEechHH
Q 017718 292 VFKALALGASGIFIGRPV 309 (367)
Q Consensus 292 v~kal~lGAd~V~ig~~~ 309 (367)
++.++.+||+++.-+..-
T Consensus 191 ~~~~l~~G~~G~is~~~n 208 (292)
T 2ojp_A 191 ALDFMQYGGHGVISVTAN 208 (292)
T ss_dssp HHHHHHTTCCEEEESGGG
T ss_pred HHHHHHCCCcEEEeCHHH
Confidence 678899999999988743
|
| >3nav_A Tryptophan synthase alpha chain; alpha subunit, structural genomics, CSG center for structural genomics of infectious diseases; 2.10A {Vibrio cholerae o1 biovar el tor} SCOP: c.1.2.4 | Back alignment and structure |
|---|
Probab=93.89 E-value=0.25 Score=45.85 Aligned_cols=36 Identities=31% Similarity=0.351 Sum_probs=31.0
Q ss_pred HHHHhhcCCCEEEEec-CCHHHHHHHHHcCCcEEEEc
Q 017718 215 KWLQTITKLPILVKGV-LTAEDARIAVQAGAAGIIVS 250 (367)
Q Consensus 215 ~~l~~~~~~Pv~vK~v-~~~~~a~~~~~~G~d~i~vs 250 (367)
+.+|+.+++||++-.. .++++++.+.+.|+|+++|.
T Consensus 201 ~~vr~~~~~Pv~vGfGIst~e~~~~~~~~gADgvIVG 237 (271)
T 3nav_A 201 ERLQQFDAPPALLGFGISEPAQVKQAIEAGAAGAISG 237 (271)
T ss_dssp HHHHHTTCCCEEECSSCCSHHHHHHHHHTTCSEEEES
T ss_pred HHHHHhcCCCEEEECCCCCHHHHHHHHHcCCCEEEEC
Confidence 4788888999999665 57999998999999999993
|
| >3ozy_A Putative mandelate racemase; beta-alpha barrel, enolase superfamily member, M-xylarate, U function; HET: DXL; 1.30A {Bordetella bronchiseptica} PDB: 3ozm_A* 3h12_A 3op2_A* | Back alignment and structure |
|---|
Probab=93.85 E-value=0.51 Score=45.83 Aligned_cols=120 Identities=15% Similarity=0.081 Sum_probs=84.2
Q ss_pred cCCHHHHHHHHHHHHHcCCcEEEEecCCCCCCchhHHhhhhcCCCCccccccccccccCccccccchhhHHHhhhccCcc
Q 017718 132 YKDRNVVAQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLTLKNFQGLDLGKMDEANDSGLAAYVAGQIDRS 211 (367)
Q Consensus 132 ~~d~~~~~~~l~ra~~~G~~ai~itvd~p~~g~r~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~ 211 (367)
..+++.+.+.++++.+.|++++=+.+++.. +.|+.
T Consensus 149 ~~~~e~~~~~a~~~~~~G~~~iKiKvG~~~----~~d~~----------------------------------------- 183 (389)
T 3ozy_A 149 DLTPDQAADELAGWVEQGFTAAKLKVGRAP----RKDAA----------------------------------------- 183 (389)
T ss_dssp SCCHHHHHHHHHHHHHTTCSEEEEECCSCH----HHHHH-----------------------------------------
T ss_pred CCCHHHHHHHHHHHHHCCCCEEeeccCCCH----HHHHH-----------------------------------------
Confidence 467888888888888999999988776410 00000
Q ss_pred ccHHHHHhhc--CCCEEEEec--CCHHH----HHHHHHcCCcEEEEcCCCCCCCCCccchHHHHHHHH-HHhcCCCcEEE
Q 017718 212 LSWKWLQTIT--KLPILVKGV--LTAED----ARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVV-KATQGRIPVFL 282 (367)
Q Consensus 212 ~~~~~l~~~~--~~Pv~vK~v--~~~~~----a~~~~~~G~d~i~vs~~gg~~~~~~~~~~~~l~~i~-~~~~~~~~via 282 (367)
..+.+|+.+ +++|.+..- .+.++ ++.+.+.|++.|-- ...+..++.+.+++ +.+ .+||++
T Consensus 184 -~v~avR~a~g~d~~l~vDan~~~~~~~A~~~~~~l~~~~i~~iEq--------P~~~~d~~~~~~l~~~~~--~iPIa~ 252 (389)
T 3ozy_A 184 -NLRAMRQRVGADVEILVDANQSLGRHDALAMLRILDEAGCYWFEE--------PLSIDDIEGHRILRAQGT--PVRIAT 252 (389)
T ss_dssp -HHHHHHHHHCTTSEEEEECTTCCCHHHHHHHHHHHHHTTCSEEES--------CSCTTCHHHHHHHHTTCC--SSEEEE
T ss_pred -HHHHHHHHcCCCceEEEECCCCcCHHHHHHHHHHHHhcCCCEEEC--------CCCcccHHHHHHHHhcCC--CCCEEe
Confidence 123667665 578888754 34544 46677889888741 11223567777777 554 799999
Q ss_pred ecCCCCHHHHHHHHHcC-CCEEEech
Q 017718 283 DGGVRRGTDVFKALALG-ASGIFIGR 307 (367)
Q Consensus 283 ~GGI~~~~dv~kal~lG-Ad~V~ig~ 307 (367)
++.+.+..|+.+++..| +|.|++--
T Consensus 253 dE~i~~~~~~~~~i~~~~~d~v~ik~ 278 (389)
T 3ozy_A 253 GENLYTRNAFNDYIRNDAIDVLQADA 278 (389)
T ss_dssp CTTCCHHHHHHHHHHTTCCSEECCCT
T ss_pred CCCCCCHHHHHHHHHcCCCCEEEeCc
Confidence 99999999999999976 89998854
|
| >3a5f_A Dihydrodipicolinate synthase; TIM barrel, enzyme, amino-acid biosynthesis, cytoplasm, diaminopimelate biosynthesis, lyase; HET: KPI; 1.19A {Clostridium botulinum A} PDB: 3bi8_A* 3ird_A* | Back alignment and structure |
|---|
Probab=93.85 E-value=3.7 Score=37.98 Aligned_cols=179 Identities=13% Similarity=0.150 Sum_probs=101.8
Q ss_pred ceEeCcccchhccCChhhHHHHHHHHHcCCceee--c---CCCCCCHHHHH-------hh-CC-CceEEEEeecCCHHHH
Q 017718 73 PIMIAPTAMQKMAHPEGEYATARAASAAGTIMTL--S---SWSTSSVEEVA-------ST-GP-GIRFFQLYVYKDRNVV 138 (367)
Q Consensus 73 Pi~iAPm~~~~l~~~~~e~~~a~aa~~~G~~~~v--s---~~~~~~~e~i~-------~~-~~-~~~~~QLy~~~d~~~~ 138 (367)
|.++.|+.-.+ .+.+.-..+.+-.-+.|+...+ | +..+.+.||-. +. .. -|.+...- ..+-+..
T Consensus 8 ~a~vTPf~~dg-iD~~~l~~lv~~li~~Gv~gl~~~GttGE~~~Ls~~Er~~v~~~~~~~~~gr~pvi~Gvg-~~~t~~a 85 (291)
T 3a5f_A 8 VAIITPFTNTG-VDFDKLSELIEWHIKSKTDAIIVCGTTGEATTMTETERKETIKFVIDKVNKRIPVIAGTG-SNNTAAS 85 (291)
T ss_dssp EECCCCBCSSS-BCHHHHHHHHHHHHHTTCCEEEESSGGGTGGGSCHHHHHHHHHHHHHHHTTSSCEEEECC-CSSHHHH
T ss_pred eeeEcCcCCCC-cCHHHHHHHHHHHHHcCCCEEEECccccChhhCCHHHHHHHHHHHHHHhCCCCcEEEeCC-cccHHHH
Confidence 45567775444 5555455677777778876443 3 33556666532 21 22 45666654 3456667
Q ss_pred HHHHHHHHHcCCcEEEEecCCCCCCchhHHhhhhcCCCCccccccccccccCccccccchhhHHHhhhccCccccHHHHH
Q 017718 139 AQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLTLKNFQGLDLGKMDEANDSGLAAYVAGQIDRSLSWKWLQ 218 (367)
Q Consensus 139 ~~~l~ra~~~G~~ai~itvd~p~~g~r~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~l~ 218 (367)
.++.+.|+++|++++.+. .|.. ...+ ..++.+| ++.+.
T Consensus 86 i~la~~a~~~Gadavlv~--~P~y-----------------~~~s-------------~~~l~~~----------f~~ia 123 (291)
T 3a5f_A 86 IAMSKWAESIGVDGLLVI--TPYY-----------------NKTT-------------QKGLVKH----------FKAVS 123 (291)
T ss_dssp HHHHHHHHHTTCSEEEEE--CCCS-----------------SCCC-------------HHHHHHH----------C-CTG
T ss_pred HHHHHHHHhcCCCEEEEc--CCCC-----------------CCCC-------------HHHHHHH----------HHHHH
Confidence 788999999999999874 3331 0000 0011111 12445
Q ss_pred hhcCCCEEEEec-------CCHHHHHHHHHcC-CcEEEEcCCCCCCCCCccchHHHHHHHHHHhcCCCcEEEecCCCCHH
Q 017718 219 TITKLPILVKGV-------LTAEDARIAVQAG-AAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGT 290 (367)
Q Consensus 219 ~~~~~Pv~vK~v-------~~~~~a~~~~~~G-~d~i~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~~~via~GGI~~~~ 290 (367)
+.+++||++=.+ .+++...++.+.. +-+|--+ . .....+.++.+..++++.| .+|. -.
T Consensus 124 ~a~~lPiilYn~P~~tg~~l~~~~~~~La~~pnivgiK~s--~--------gd~~~~~~~~~~~~~~f~v-~~G~---d~ 189 (291)
T 3a5f_A 124 DAVSTPIIIYNVPGRTGLNITPGTLKELCEDKNIVAVXEA--S--------GNISQIAQIKALCGDKLDI-YSGN---DD 189 (291)
T ss_dssp GGCCSCEEEEECHHHHSCCCCHHHHHHHTTSTTEEEEEEC--S--------CCHHHHHHHHHHHGGGSEE-EESC---GG
T ss_pred HhcCCCEEEEeCccccCCCCCHHHHHHHHcCCCEEEEeCC--C--------CCHHHHHHHHHhcCCCeEE-EeCc---HH
Confidence 667899998764 5677777776542 2222221 1 1234445555555445655 4452 34
Q ss_pred HHHHHHHcCCCEEEechHH
Q 017718 291 DVFKALALGASGIFIGRPV 309 (367)
Q Consensus 291 dv~kal~lGAd~V~ig~~~ 309 (367)
-++.++.+||+++.-+..-
T Consensus 190 ~~~~~l~~G~~G~is~~an 208 (291)
T 3a5f_A 190 QIIPILALGGIGVISVLAN 208 (291)
T ss_dssp GHHHHHHTTCCEEEESGGG
T ss_pred HHHHHHHCCCCEEEecHHH
Confidence 4678899999999988753
|
| >3tfx_A Orotidine 5'-phosphate decarboxylase; PSI-biology, nysgrc, 000529, structural genomics, NEW YORK S genomics research consortium; 2.19A {Lactobacillus acidophilus} | Back alignment and structure |
|---|
Probab=93.82 E-value=0.18 Score=46.47 Aligned_cols=80 Identities=25% Similarity=0.460 Sum_probs=52.2
Q ss_pred HHHHHHHHcCCcEEEEcCCCCCCCCCccchHHHHHHHHHHhcCCCcEEEecCCCCHH----H------HHHHHHcCCCEE
Q 017718 234 EDARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGT----D------VFKALALGASGI 303 (367)
Q Consensus 234 ~~a~~~~~~G~d~i~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~~~via~GGI~~~~----d------v~kal~lGAd~V 303 (367)
+-|+.+.++|+||+++|. - -+..+++.++.. .++...||+-.. | +.+++..|||.+
T Consensus 148 ~~A~~a~~~G~dGvV~s~----------~---e~~~ir~~~~~~-f~~vtPGIr~~g~~~gDQ~Rv~T~~~a~~aGad~i 213 (259)
T 3tfx_A 148 SLAKMAKHSGADGVICSP----------L---EVKKLHENIGDD-FLYVTPGIRPAGNAKDDQSRVATPKMAKEWGSSAI 213 (259)
T ss_dssp HHHHHHHHTTCCEEECCG----------G---GHHHHHHHHCSS-SEEEECCCCCC-----------CHHHHHHTTCSEE
T ss_pred HHHHHHHHhCCCEEEECH----------H---HHHHHHhhcCCc-cEEEcCCcCCCCCCcCCccccCCHHHHHHcCCCEE
Confidence 346777889999999841 1 234455555433 367889998543 2 678889999999
Q ss_pred EechHHHHHhhccChHHHHHHHHHHHHHHH
Q 017718 304 FIGRPVVYSLAAEGEKGVRRVLEMLREEFE 333 (367)
Q Consensus 304 ~ig~~~l~~l~~~G~~~v~~~i~~l~~el~ 333 (367)
.+||++..+ ..+ ...++.++++++
T Consensus 214 VvGr~I~~a---~dp---~~a~~~i~~~~~ 237 (259)
T 3tfx_A 214 VVGRPITLA---SDP---KAAYEAIKKEFN 237 (259)
T ss_dssp EECHHHHTS---SSH---HHHHHHHHHHHT
T ss_pred EEChHHhCC---CCH---HHHHHHHHHHHH
Confidence 999987642 222 235566666644
|
| >3na8_A Putative dihydrodipicolinate synthetase; lyase; HET: MSE; 1.85A {Pseudomonas aeruginosa} | Back alignment and structure |
|---|
Probab=93.78 E-value=4.5 Score=37.98 Aligned_cols=180 Identities=14% Similarity=0.101 Sum_probs=105.6
Q ss_pred cceEeCcccchhccCChhhHHHHHHHHHcCCceee--c---CCCCCCHHHHH-------hh-CC-CceEEEEeecCCHHH
Q 017718 72 MPIMIAPTAMQKMAHPEGEYATARAASAAGTIMTL--S---SWSTSSVEEVA-------ST-GP-GIRFFQLYVYKDRNV 137 (367)
Q Consensus 72 ~Pi~iAPm~~~~l~~~~~e~~~a~aa~~~G~~~~v--s---~~~~~~~e~i~-------~~-~~-~~~~~QLy~~~d~~~ 137 (367)
.|.++.|+.-.+-.+.+.-..+.+-..+.|+...+ + +..+.+.+|-. +. .. -|.+...- ..+-+.
T Consensus 29 ~~a~vTPf~~dg~iD~~~l~~lv~~li~~Gv~Gi~v~GtTGE~~~Ls~~Er~~v~~~~v~~~~grvpViaGvg-~~~t~~ 107 (315)
T 3na8_A 29 IGYTITPFAADGGLDLPALGRSIERLIDGGVHAIAPLGSTGEGAYLSDPEWDEVVDFTLKTVAHRVPTIVSVS-DLTTAK 107 (315)
T ss_dssp EEECCCCBCTTSSBCHHHHHHHHHHHHHTTCSEEECSSGGGTGGGSCHHHHHHHHHHHHHHHTTSSCBEEECC-CSSHHH
T ss_pred EEEeeCcCCCCCCcCHHHHHHHHHHHHHcCCCEEEECccccChhhCCHHHHHHHHHHHHHHhCCCCcEEEecC-CCCHHH
Confidence 35566777433333333344667777778876443 3 33556666522 21 22 45666654 356667
Q ss_pred HHHHHHHHHHcCCcEEEEecCCCCCCchhHHhhhhcCCCCccccccccccccCccccccchhhHHHhhhccCccccHHHH
Q 017718 138 VAQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLTLKNFQGLDLGKMDEANDSGLAAYVAGQIDRSLSWKWL 217 (367)
Q Consensus 138 ~~~~l~ra~~~G~~ai~itvd~p~~g~r~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~l 217 (367)
..++.+.|+++|++++.+. .|.. ...+ ..++.+ .++.+
T Consensus 108 ai~la~~A~~~Gadavlv~--~P~y-----------------~~~s-------------~~~l~~----------~f~~v 145 (315)
T 3na8_A 108 TVRRAQFAESLGAEAVMVL--PISY-----------------WKLN-------------EAEVFQ----------HYRAV 145 (315)
T ss_dssp HHHHHHHHHHTTCSEEEEC--CCCS-----------------SCCC-------------HHHHHH----------HHHHH
T ss_pred HHHHHHHHHhcCCCEEEEC--CCCC-----------------CCCC-------------HHHHHH----------HHHHH
Confidence 7788999999999999872 2321 1000 001111 12467
Q ss_pred HhhcCCCEEEEec-------CCHHHHHHH-HHcC-CcEEEEcCCCCCCCCCccchHHHHHHHHHHhcCCCcEEEecCCCC
Q 017718 218 QTITKLPILVKGV-------LTAEDARIA-VQAG-AAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRR 288 (367)
Q Consensus 218 ~~~~~~Pv~vK~v-------~~~~~a~~~-~~~G-~d~i~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~~~via~GGI~~ 288 (367)
.+.+++||++=.+ .+++...++ .+.. +-+|--+ . ..+..+.++.+..++++.|+. |.
T Consensus 146 a~a~~lPiilYn~P~~tg~~l~~~~~~~L~a~~pnIvgiKds--s--------gd~~~~~~~~~~~~~~f~v~~-G~--- 211 (315)
T 3na8_A 146 GEAIGVPVMLYNNPGTSGIDMSVELILRIVREVDNVTMVKES--T--------GDIQRMHKLRLLGEGRVPFYN-GC--- 211 (315)
T ss_dssp HHHCSSCEEEEECHHHHSCCCCHHHHHHHHHHSTTEEEEEEC--S--------SCHHHHHHHHHHTTTCSCEEE-CC---
T ss_pred HHhCCCcEEEEeCcchhCcCCCHHHHHHHHhcCCCEEEEECC--C--------CCHHHHHHHHHHcCCCEEEEe-Cc---
Confidence 7778999998875 567777777 5543 2222221 1 134455566666655677665 42
Q ss_pred HHHHHHHHHcCCCEEEechH
Q 017718 289 GTDVFKALALGASGIFIGRP 308 (367)
Q Consensus 289 ~~dv~kal~lGAd~V~ig~~ 308 (367)
..-++.++++||+++.-+..
T Consensus 212 D~~~l~~l~~G~~G~is~~a 231 (315)
T 3na8_A 212 NPLALEAFVAGAKGWCSAAP 231 (315)
T ss_dssp GGGHHHHHHHTCSEEEESGG
T ss_pred hHHHHHHHHCCCCEEEechh
Confidence 23467889999999998874
|
| >2yxg_A DHDPS, dihydrodipicolinate synthase; MJ0244, TIM beta/alpha-barrel fold, structural genomics, NPPSFA; 2.20A {Methanocaldococcus jannaschii DSM2661} | Back alignment and structure |
|---|
Probab=93.76 E-value=4.2 Score=37.59 Aligned_cols=177 Identities=19% Similarity=0.210 Sum_probs=100.5
Q ss_pred ceEeCcccchhccCChhhHHHHHHHHHcCCceee--cC---CCCCCHHHHH-------hh-CC-CceEEEEeecCCHHHH
Q 017718 73 PIMIAPTAMQKMAHPEGEYATARAASAAGTIMTL--SS---WSTSSVEEVA-------ST-GP-GIRFFQLYVYKDRNVV 138 (367)
Q Consensus 73 Pi~iAPm~~~~l~~~~~e~~~a~aa~~~G~~~~v--s~---~~~~~~e~i~-------~~-~~-~~~~~QLy~~~d~~~~ 138 (367)
|.++.|+. .+-.+.+.-..+.+-.-+.|+...+ || ..+.+.||-. +. .. -|.+...- ..+-+..
T Consensus 7 ~a~vTPf~-dg~iD~~~l~~lv~~li~~Gv~gl~~~GttGE~~~Ls~~Er~~v~~~~~~~~~gr~pviaGvg-~~~t~~a 84 (289)
T 2yxg_A 7 PAIITPFK-NKEVDFDGLEENINFLIENGVSGIVAVGTTGESPTLSHEEHKKVIEKVVDVVNGRVQVIAGAG-SNCTEEA 84 (289)
T ss_dssp EBCCCCEE-TTEECHHHHHHHHHHHHHTTCSEEEESSTTTTGGGSCHHHHHHHHHHHHHHHTTSSEEEEECC-CSSHHHH
T ss_pred eeeecCcC-CCCcCHHHHHHHHHHHHHCCCCEEEECccccChhhCCHHHHHHHHHHHHHHhCCCCcEEEeCC-CCCHHHH
Confidence 44566775 5444444444666667778876443 33 3455666522 22 22 35555654 3456667
Q ss_pred HHHHHHHHHcCCcEEEEecCCCCCCchhHHhhhhcCCCCccccccccccccCccccccchhhHHHhhhccCccccHHHHH
Q 017718 139 AQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLTLKNFQGLDLGKMDEANDSGLAAYVAGQIDRSLSWKWLQ 218 (367)
Q Consensus 139 ~~~l~ra~~~G~~ai~itvd~p~~g~r~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~l~ 218 (367)
.++.+.|+++|++++.+. .|.. ...+ ..++.+ .++.+.
T Consensus 85 i~la~~a~~~Gadavlv~--~P~y-----------------~~~s-------------~~~l~~----------~f~~ia 122 (289)
T 2yxg_A 85 IELSVFAEDVGADAVLSI--TPYY-----------------NKPT-------------QEGLRK----------HFGKVA 122 (289)
T ss_dssp HHHHHHHHHHTCSEEEEE--CCCS-----------------SCCC-------------HHHHHH----------HHHHHH
T ss_pred HHHHHHHHhcCCCEEEEC--CCCC-----------------CCCC-------------HHHHHH----------HHHHHH
Confidence 788999999999999874 2331 0000 001111 234666
Q ss_pred hhcCCCEEEEec-------CCHHHHHHHH-HcC-CcEEEEcCCCCCCCCCccchHHHHHHHHHHhcCCCcEEEecCCCCH
Q 017718 219 TITKLPILVKGV-------LTAEDARIAV-QAG-AAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRG 289 (367)
Q Consensus 219 ~~~~~Pv~vK~v-------~~~~~a~~~~-~~G-~d~i~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~~~via~GGI~~~ 289 (367)
+.+++||++=.+ .+++...++. +.. +-+|--+ .| .+..+.++.+.. ++.| .+|. -
T Consensus 123 ~a~~lPiilYn~P~~tg~~l~~~~~~~La~~~pnivgiK~s--~g--------d~~~~~~~~~~~--~f~v-~~G~---d 186 (289)
T 2yxg_A 123 ESINLPIVLYNVPSRTAVNLEPKTVKLLAEEYSNISAVKEA--NP--------NLSQVSELIHDA--KITV-LSGN---D 186 (289)
T ss_dssp HHCSSCEEEEECHHHHSCCCCHHHHHHHHHHCTTEEEEEEC--CS--------CTHHHHHHHHHT--CSEE-EESC---G
T ss_pred HhcCCCEEEEeCccccCcCCCHHHHHHHHHhCCCEEEEEeC--CC--------CHHHHHHHHHhC--CeEE-EECc---H
Confidence 778999998764 5678777776 542 2222221 11 223344454443 5555 4452 3
Q ss_pred HHHHHHHHcCCCEEEechHH
Q 017718 290 TDVFKALALGASGIFIGRPV 309 (367)
Q Consensus 290 ~dv~kal~lGAd~V~ig~~~ 309 (367)
.-++.++.+||+++.-+..-
T Consensus 187 ~~~~~~l~~G~~G~is~~~n 206 (289)
T 2yxg_A 187 ELTLPIIALGGKGVISVVAN 206 (289)
T ss_dssp GGHHHHHHTTCCEEEESGGG
T ss_pred HHHHHHHHCCCCEEEeChhh
Confidence 44778899999999988753
|
| >3pm6_A Putative fructose-bisphosphate aldolase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; 2.20A {Coccidioides immitis} | Back alignment and structure |
|---|
Probab=93.73 E-value=0.89 Score=42.73 Aligned_cols=114 Identities=17% Similarity=0.125 Sum_probs=80.3
Q ss_pred CCHHHHHHHHHcCCcEEEEcC---CCCCCCCCccchHHHHHHHHHHhcCCCcEEEecCCCCH-HHHHHHHHcCCCEEEec
Q 017718 231 LTAEDARIAVQAGAAGIIVSN---HGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRG-TDVFKALALGASGIFIG 306 (367)
Q Consensus 231 ~~~~~a~~~~~~G~d~i~vs~---~gg~~~~~~~~~~~~l~~i~~~~~~~~~via~GGI~~~-~dv~kal~lGAd~V~ig 306 (367)
.++++|+...+.|+|.+-++. ||-+....-.-.++.|.+|.+.++.++|+..=||=..+ +++.+++.+|..-|=|+
T Consensus 172 T~Peea~~Fv~TgvD~LAvaiGt~HG~Yk~~~p~Ld~~~L~~I~~~v~~~vpLVlHGgSG~p~e~i~~ai~~GV~KiNi~ 251 (306)
T 3pm6_A 172 TTPEESEEFVATGINWLAPAFGNVHGNYGPRGVQLDYERLQRINEAVGERVGLVLHGADPFTKEIFEKCIERGVAKVNVN 251 (306)
T ss_dssp CCHHHHHHHHTTTCSEECCCSSCCSSCCCTTCCCCCHHHHHHHHHHHTTTSEEEECSCTTCCHHHHHHHHHTTEEEEEES
T ss_pred CCHHHHHHHHHcCCCEEEEEcCccccCcCCCCCccCHHHHHHHHHHhCCCCCEEeeCCCCCCHHHHHHHHHcCCeEEEeC
Confidence 578999888899999998863 55442112233788999999888557999998865444 56889999999999999
Q ss_pred hHHHHHhhc--------cCh-HHHHHHHHHHHHHHHHHHHHhCCCCh
Q 017718 307 RPVVYSLAA--------EGE-KGVRRVLEMLREEFELAMALSGCRSL 344 (367)
Q Consensus 307 ~~~l~~l~~--------~G~-~~v~~~i~~l~~el~~~m~~~G~~si 344 (367)
|-+..+... ..+ .-+....+.+++.++..|..+|...-
T Consensus 252 Tdl~~a~~~~~r~~~~~~~~~~~~~~~~~a~~~~v~~~i~~fgs~gk 298 (306)
T 3pm6_A 252 RAVNNEYVKVMREKAGSLPITRLHEEVTNAMQAAVEKIMDMIDSTGK 298 (306)
T ss_dssp HHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHHHHHHHHHHHTTCTTG
T ss_pred hHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHHHHHHHHhCCCCc
Confidence 976543211 011 12333456678888889999997653
|
| >1eix_A Orotidine 5'-monophosphate decarboxylase; alpha-beta-barrel, protein-inhibitor complex, homodimer, lyase; HET: BMQ; 2.50A {Escherichia coli} SCOP: c.1.2.3 PDB: 1jjk_A* 1l2u_A | Back alignment and structure |
|---|
Probab=93.71 E-value=0.11 Score=47.24 Aligned_cols=59 Identities=22% Similarity=0.292 Sum_probs=42.8
Q ss_pred HHHcCCcEEEEcCCCCCCCCCccchHHHHHHHHHHhcCCCcEEEecCCCCHH----------HHHHHHHcCCCEEEechH
Q 017718 239 AVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGT----------DVFKALALGASGIFIGRP 308 (367)
Q Consensus 239 ~~~~G~d~i~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~~~via~GGI~~~~----------dv~kal~lGAd~V~ig~~ 308 (367)
..+.|.++++.+ ..+ +.++++..+ +.+++.+|||+-.. .+.+++..|||.+.+||+
T Consensus 158 ~~~~G~~g~V~~------------~~e-i~~lr~~~~-~~~i~v~gGI~~~g~~~~dq~rv~t~~~a~~aGad~iVvGr~ 223 (245)
T 1eix_A 158 TQKCGLDGVVCS------------AQE-AVRFKQVFG-QEFKLVTPGIRPQGSEAGDQRRIMTPEQALSAGVDYMVIGRP 223 (245)
T ss_dssp HHHTTCSEEECC------------GGG-HHHHHHHHC-SSSEEEECCBCCTTCCCTTCCSCBCHHHHHHTTCSEEEECHH
T ss_pred HHHcCCCeEEeC------------HHH-HHHHHHhcC-CCCEEEECCcCCCCCCccchhccCCHHHHHHcCCCEEEECHH
Confidence 567888887653 223 556665553 46899999998431 366778899999999999
Q ss_pred HHH
Q 017718 309 VVY 311 (367)
Q Consensus 309 ~l~ 311 (367)
++.
T Consensus 224 I~~ 226 (245)
T 1eix_A 224 VTQ 226 (245)
T ss_dssp HHT
T ss_pred HcC
Confidence 874
|
| >1twd_A Copper homeostasis protein CUTC; TIM-like protein, structural genomics, PSI, protein structure initiative; 1.70A {Shigella flexneri} SCOP: c.1.30.1 PDB: 1x7i_A 1x8c_A | Back alignment and structure |
|---|
Probab=93.67 E-value=0.29 Score=44.91 Aligned_cols=70 Identities=27% Similarity=0.323 Sum_probs=54.6
Q ss_pred CCHHHHHHHHHcCCcEEEEcCC---CCCCCCCccchHHHHHHHHHHhcCCCcEEE-----ecCCCCH--------HHHHH
Q 017718 231 LTAEDARIAVQAGAAGIIVSNH---GARQLDYVPATIMALEEVVKATQGRIPVFL-----DGGVRRG--------TDVFK 294 (367)
Q Consensus 231 ~~~~~a~~~~~~G~d~i~vs~~---gg~~~~~~~~~~~~l~~i~~~~~~~~~via-----~GGI~~~--------~dv~k 294 (367)
.+.++|..|.+.|||-|-+-.. ||. .|+...+..+++.+ ++||.+ .|++... .|+..
T Consensus 9 ~s~~~a~~A~~~GAdRIELc~~L~~GGl-----TPS~g~i~~~~~~~--~ipv~vMIRPR~GdF~Ys~~E~~~M~~Di~~ 81 (256)
T 1twd_A 9 YSMECALTAQQNGADRVELCAAPKEGGL-----TPSLGVLKSVRQRV--TIPVHPIIRPRGGDFCYSDGEFAAILEDVRT 81 (256)
T ss_dssp SSHHHHHHHHHTTCSEEEECBCGGGTCB-----CCCHHHHHHHHHHC--CSCEEEBCCSSSSCSCCCHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHcCCCEEEEcCCcccCCC-----CCCHHHHHHHHHHc--CCceEEEECCCCCCCcCCHHHHHHHHHHHHH
Confidence 7899999999999999998542 443 35667777777776 789888 5666554 36777
Q ss_pred HHHcCCCEEEech
Q 017718 295 ALALGASGIFIGR 307 (367)
Q Consensus 295 al~lGAd~V~ig~ 307 (367)
+..+|||+|.+|-
T Consensus 82 ~~~~GadGvV~G~ 94 (256)
T 1twd_A 82 VRELGFPGLVTGV 94 (256)
T ss_dssp HHHTTCSEEEECC
T ss_pred HHHcCCCEEEEee
Confidence 7889999999994
|
| >3b4u_A Dihydrodipicolinate synthase; structural genomics, PSI-2, MC protein structure initiative, midwest center for structural genomics; 1.20A {Agrobacterium tumefaciens str} | Back alignment and structure |
|---|
Probab=93.67 E-value=4.4 Score=37.56 Aligned_cols=180 Identities=18% Similarity=0.173 Sum_probs=103.0
Q ss_pred ceEeCcccchhccCChhhHHHHHHHHHcCCceee--cC---CCCCCHHHHH-------hhCC--CceEEEEeecCCHHHH
Q 017718 73 PIMIAPTAMQKMAHPEGEYATARAASAAGTIMTL--SS---WSTSSVEEVA-------STGP--GIRFFQLYVYKDRNVV 138 (367)
Q Consensus 73 Pi~iAPm~~~~l~~~~~e~~~a~aa~~~G~~~~v--s~---~~~~~~e~i~-------~~~~--~~~~~QLy~~~d~~~~ 138 (367)
|.++.|+.-.+-.+.+.-..+.+-.-+.|+...+ || ..+.+.||-. +... -|.+...- ..+-+..
T Consensus 9 ~a~vTPf~~dg~iD~~~l~~lv~~li~~Gv~gl~~~GttGE~~~Ls~~Er~~v~~~~~~~~~gr~pviaGvg-~~~t~~a 87 (294)
T 3b4u_A 9 AALTTPFKTDGTVDIDAMIAHARRCLSNGCDSVTLFGTTGEGCSVGSRERQAILSSFIAAGIAPSRIVTGVL-VDSIEDA 87 (294)
T ss_dssp EECCCCBCTTSSBCHHHHHHHHHHHHHTTCSEEEESSTTTTGGGSCHHHHHHHHHHHHHTTCCGGGEEEEEC-CSSHHHH
T ss_pred EEEECCCCCCCCcCHHHHHHHHHHHHHcCCCEEEECccccChhhCCHHHHHHHHHHHHHHhCCCCcEEEeCC-CccHHHH
Confidence 4456666422223333334666666778876443 33 3456666532 2222 35666664 3466667
Q ss_pred HHHHHHHHHcCCcEEEEecCCCCCCchhHHhhhhcCCCCcccc-ccccccccCccccccchhhHHHhhhccCccccHHHH
Q 017718 139 AQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLTL-KNFQGLDLGKMDEANDSGLAAYVAGQIDRSLSWKWL 217 (367)
Q Consensus 139 ~~~l~ra~~~G~~ai~itvd~p~~g~r~~~~~~~~~~p~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~l 217 (367)
.++.+.|+++|++++.+. .|.. .. .+ ..++.+ .++.+
T Consensus 88 i~la~~A~~~Gadavlv~--~P~y-----------------~~~~s-------------~~~l~~----------~f~~v 125 (294)
T 3b4u_A 88 ADQSAEALNAGARNILLA--PPSY-----------------FKNVS-------------DDGLFA----------WFSAV 125 (294)
T ss_dssp HHHHHHHHHTTCSEEEEC--CCCS-----------------SCSCC-------------HHHHHH----------HHHHH
T ss_pred HHHHHHHHhcCCCEEEEc--CCcC-----------------CCCCC-------------HHHHHH----------HHHHH
Confidence 789999999999999873 3321 10 00 001111 23467
Q ss_pred Hhhc---CCCEEEEec-------CCHHHHHHHH-HcC--CcEEEEcCCCCCCCCCccchHHHHHHHHHHhcCCCcEEEec
Q 017718 218 QTIT---KLPILVKGV-------LTAEDARIAV-QAG--AAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDG 284 (367)
Q Consensus 218 ~~~~---~~Pv~vK~v-------~~~~~a~~~~-~~G--~d~i~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~~~via~G 284 (367)
.+.+ ++||++=.+ .+++...++. +.. +-+|--+. ..+..+.++.+..+ ++.|+ +|
T Consensus 126 a~a~p~~~lPiilYn~P~~tg~~l~~~~~~~La~~~pn~ivgiKds~----------gd~~~~~~~~~~~~-~f~v~-~G 193 (294)
T 3b4u_A 126 FSKIGKDARDILVYNIPSVTMVTLSVELVGRLKAAFPGIVTGVKDSS----------GNWSHTERLLKEHG-DLAIL-IG 193 (294)
T ss_dssp HHHHCTTCCCEEEEECHHHHSCCCCHHHHHHHHHHCTTTEEEEEECC----------CCHHHHHHHHHHHT-TSEEE-EC
T ss_pred HHhcCCCCCcEEEEECcchhCcCCCHHHHHHHHHhCCCcEEEEEECC----------CCHHHHHHHHHhCC-CeEEE-Ec
Confidence 7778 899998764 5678777776 542 22333221 13444555555554 55554 45
Q ss_pred CCCCHHHHHHHHHcCCCEEEechHHH
Q 017718 285 GVRRGTDVFKALALGASGIFIGRPVV 310 (367)
Q Consensus 285 GI~~~~dv~kal~lGAd~V~ig~~~l 310 (367)
+...++.++.+||+++.-+..-+
T Consensus 194 ---~d~~~l~~l~~G~~G~is~~~n~ 216 (294)
T 3b4u_A 194 ---DERDLARGVRLGGQGAISGVANF 216 (294)
T ss_dssp ---CHHHHHHHHHTTCCEEEESGGGT
T ss_pred ---cHHHHHHHHHCCCCEEEeCHHHh
Confidence 34567788999999999887543
|
| >1vrd_A Inosine-5'-monophosphate dehydrogenase; TM1347, structural G joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.18A {Thermotoga maritima} SCOP: c.1.5.1 | Back alignment and structure |
|---|
Probab=93.66 E-value=0.19 Score=50.44 Aligned_cols=68 Identities=22% Similarity=0.297 Sum_probs=53.7
Q ss_pred HHHHHHHHHcCCcEEEEcCCCCCCCCCccchHHHHHHHHHHhcCCCcEEEecCCCCHHHHHHHHHcCCCEEEec
Q 017718 233 AEDARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFIG 306 (367)
Q Consensus 233 ~~~a~~~~~~G~d~i~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~~~via~GGI~~~~dv~kal~lGAd~V~ig 306 (367)
.+.+..+.++|+|.|.++...|. ....++.+.++++.++ .+||++ |++.+.+++.++..+|||++.++
T Consensus 239 ~~~a~~l~~aGvd~v~i~~~~G~----~~~~~e~i~~i~~~~p-~~pvi~-g~~~t~e~a~~l~~~G~d~I~v~ 306 (494)
T 1vrd_A 239 MERVEKLVKAGVDVIVIDTAHGH----SRRVIETLEMIKADYP-DLPVVA-GNVATPEGTEALIKAGADAVKVG 306 (494)
T ss_dssp HHHHHHHHHTTCSEEEECCSCCS----SHHHHHHHHHHHHHCT-TSCEEE-EEECSHHHHHHHHHTTCSEEEEC
T ss_pred HHHHHHHHHhCCCEEEEEecCCc----hHHHHHHHHHHHHHCC-CceEEe-CCcCCHHHHHHHHHcCCCEEEEc
Confidence 56788999999999999542221 1246778888888764 588887 78899999999999999999984
|
| >2hmc_A AGR_L_411P, dihydrodipicolinate synthase; alpha-beta barrel (TIM barrel), structural genomics, PSI-2, structure initiative; HET: MSE; 1.90A {Agrobacterium tumefaciens str} | Back alignment and structure |
|---|
Probab=93.64 E-value=0.14 Score=49.09 Aligned_cols=88 Identities=14% Similarity=0.148 Sum_probs=51.7
Q ss_pred HHHHHHcCCcEEEEcCCCCCCCCCccchHHHHHHHHHHhcCCCcEEEecCCCCHHHHHH----HHHcCCCEEEechHHHH
Q 017718 236 ARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFK----ALALGASGIFIGRPVVY 311 (367)
Q Consensus 236 a~~~~~~G~d~i~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~~~via~GGI~~~~dv~k----al~lGAd~V~ig~~~l~ 311 (367)
++.+++.|+|+|++.++.|-...-.......+-+. .+.+++|||+--|=.+-.++++ +-.+|||++++-.|+++
T Consensus 53 v~~li~~Gv~Gl~v~GtTGE~~~Ls~eEr~~vi~~--~~~grvpViaGvg~~st~eai~la~~A~~~Gadavlv~~P~y~ 130 (344)
T 2hmc_A 53 GKELIADGMSAVVYCGSMGDWPLLTDEQRMEGVER--LVKAGIPVIVGTGAVNTASAVAHAVHAQKVGAKGLMVIPRVLS 130 (344)
T ss_dssp HHHHHHTTCCCEEESSGGGTGGGSCHHHHHHHHHH--HHHTTCCEEEECCCSSHHHHHHHHHHHHHHTCSEEEECCCCSS
T ss_pred HHHHHHcCCCEEEeCccCcChhhCCHHHHHHHHHH--HhCCCCcEEEecCCCCHHHHHHHHHHHHhcCCCEEEECCCccC
Confidence 45678899999999665442111111112222233 3456899998555445455543 33479999999999876
Q ss_pred H-hhccChHHHHHHHHHH
Q 017718 312 S-LAAEGEKGVRRVLEML 328 (367)
Q Consensus 312 ~-l~~~G~~~v~~~i~~l 328 (367)
. . .++++.++++.+
T Consensus 131 ~~~---s~~~l~~~f~~I 145 (344)
T 2hmc_A 131 RGS---VIAAQKAHFKAI 145 (344)
T ss_dssp STT---CHHHHHHHHHHH
T ss_pred CCC---CHHHHHHHHHHH
Confidence 3 2 345555444444
|
| >3m5v_A DHDPS, dihydrodipicolinate synthase; TIM barrel, csgid, amino-acid biosynthesis, diaminopimelate biosynthesis, lyase, lysine biosynthesis; HET: MSE; 1.80A {Campylobacter jejuni} SCOP: c.1.10.0 PDB: 3ler_A* | Back alignment and structure |
|---|
Probab=93.50 E-value=4.8 Score=37.44 Aligned_cols=178 Identities=14% Similarity=0.151 Sum_probs=103.1
Q ss_pred ceEeCcccchhccCChhhHHHHHHHHHcCCceee--c---CCCCCCHHHHH-------hh-C--CCceEEEEeecCCHHH
Q 017718 73 PIMIAPTAMQKMAHPEGEYATARAASAAGTIMTL--S---SWSTSSVEEVA-------ST-G--PGIRFFQLYVYKDRNV 137 (367)
Q Consensus 73 Pi~iAPm~~~~l~~~~~e~~~a~aa~~~G~~~~v--s---~~~~~~~e~i~-------~~-~--~~~~~~QLy~~~d~~~ 137 (367)
|.++.|+ -.+-.+.+.-..+.+-.-+.|+...+ + +..+.+.||-. +. . .-|.+...- ..+-..
T Consensus 14 ~a~vTPf-~dg~iD~~~l~~lv~~li~~Gv~gl~v~GttGE~~~Ls~~Er~~v~~~~~~~~~g~rvpviaGvg-~~~t~~ 91 (301)
T 3m5v_A 14 TALITPF-KNGKVDEQSYARLIKRQIENGIDAVVPVGTTGESATLTHEEHRTCIEIAVETCKGTKVKVLAGAG-SNATHE 91 (301)
T ss_dssp EECCCCE-ETTEECHHHHHHHHHHHHHTTCCEEECSSTTTTGGGSCHHHHHHHHHHHHHHHTTSSCEEEEECC-CSSHHH
T ss_pred EeeecCc-CCCCCCHHHHHHHHHHHHHcCCCEEEECccccChhhCCHHHHHHHHHHHHHHhCCCCCeEEEeCC-CCCHHH
Confidence 4456666 33333434444667777778876443 3 33455666522 22 2 235555553 346677
Q ss_pred HHHHHHHHHHcCCcEEEEecCCCCCCchhHHhhhhcCCCCccccccccccccCccccccchhhHHHhhhccCccccHHHH
Q 017718 138 VAQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLTLKNFQGLDLGKMDEANDSGLAAYVAGQIDRSLSWKWL 217 (367)
Q Consensus 138 ~~~~l~ra~~~G~~ai~itvd~p~~g~r~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~l 217 (367)
..++.+.|+++|++++.+. .|.. ...+ ..++.+ .++.+
T Consensus 92 ai~la~~a~~~Gadavlv~--~P~y-----------------~~~s-------------~~~l~~----------~f~~v 129 (301)
T 3m5v_A 92 AVGLAKFAKEHGADGILSV--APYY-----------------NKPT-------------QQGLYE----------HYKAI 129 (301)
T ss_dssp HHHHHHHHHHTTCSEEEEE--CCCS-----------------SCCC-------------HHHHHH----------HHHHH
T ss_pred HHHHHHHHHHcCCCEEEEc--CCCC-----------------CCCC-------------HHHHHH----------HHHHH
Confidence 7788999999999999873 2321 0000 001111 23467
Q ss_pred HhhcCCCEEEEec-------CCHHHHHHHHHc-C-CcEEEEcCCCCCCCCCccchHHHHHHHHHHhcCCCcEEEecCCCC
Q 017718 218 QTITKLPILVKGV-------LTAEDARIAVQA-G-AAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRR 288 (367)
Q Consensus 218 ~~~~~~Pv~vK~v-------~~~~~a~~~~~~-G-~d~i~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~~~via~GGI~~ 288 (367)
.+.+++||++=.+ .+++...++.+. . +-+|--+. ..+..+.++.+.. +++.|+ +|.
T Consensus 130 a~a~~lPiilYn~P~~tg~~l~~~~~~~La~~~pnivgiKdss----------gd~~~~~~~~~~~-~~f~v~-~G~--- 194 (301)
T 3m5v_A 130 AQSVDIPVLLYNVPGRTGCEISTDTIIKLFRDCENIYGVKEAS----------GNIDKCVDLLAHE-PRMMLI-SGE--- 194 (301)
T ss_dssp HHHCSSCEEEEECHHHHSCCCCHHHHHHHHHHCTTEEEEEECS----------SCHHHHHHHHHHC-TTSEEE-ECC---
T ss_pred HHhCCCCEEEEeCchhhCcCCCHHHHHHHHhcCCCEEEEEeCC----------CCHHHHHHHHHhC-CCeEEE-Ecc---
Confidence 7778999998775 567887777775 2 33333221 1344455565555 466654 452
Q ss_pred HHHHHHHHHcCCCEEEechHH
Q 017718 289 GTDVFKALALGASGIFIGRPV 309 (367)
Q Consensus 289 ~~dv~kal~lGAd~V~ig~~~ 309 (367)
...++.++.+||+++.-+..-
T Consensus 195 d~~~~~~l~~G~~G~is~~~n 215 (301)
T 3m5v_A 195 DAINYPILSNGGKGVISVTSN 215 (301)
T ss_dssp GGGHHHHHHTTCCEEEESGGG
T ss_pred HHHHHHHHHcCCCEEEehHHH
Confidence 344778899999999988743
|
| >3a5f_A Dihydrodipicolinate synthase; TIM barrel, enzyme, amino-acid biosynthesis, cytoplasm, diaminopimelate biosynthesis, lyase; HET: KPI; 1.19A {Clostridium botulinum A} PDB: 3bi8_A* 3ird_A* | Back alignment and structure |
|---|
Probab=93.36 E-value=0.14 Score=47.85 Aligned_cols=76 Identities=17% Similarity=0.274 Sum_probs=49.6
Q ss_pred HHHHHHcCCcEEEEcCCCCCCCCCcc-chHHHHHHHHHHhcCCCcEEEecCCCCHHHHHH----HHHcCCCEEEechHHH
Q 017718 236 ARIAVQAGAAGIIVSNHGARQLDYVP-ATIMALEEVVKATQGRIPVFLDGGVRRGTDVFK----ALALGASGIFIGRPVV 310 (367)
Q Consensus 236 a~~~~~~G~d~i~vs~~gg~~~~~~~-~~~~~l~~i~~~~~~~~~via~GGI~~~~dv~k----al~lGAd~V~ig~~~l 310 (367)
++.+.+.|+|+|++.++.|-...-.. -..+++..+++.+.+++|||+--|=.+-.++++ +-.+|||++++-.|++
T Consensus 28 v~~li~~Gv~gl~~~GttGE~~~Ls~~Er~~v~~~~~~~~~gr~pvi~Gvg~~~t~~ai~la~~a~~~Gadavlv~~P~y 107 (291)
T 3a5f_A 28 IEWHIKSKTDAIIVCGTTGEATTMTETERKETIKFVIDKVNKRIPVIAGTGSNNTAASIAMSKWAESIGVDGLLVITPYY 107 (291)
T ss_dssp HHHHHHTTCCEEEESSGGGTGGGSCHHHHHHHHHHHHHHHTTSSCEEEECCCSSHHHHHHHHHHHHHTTCSEEEEECCCS
T ss_pred HHHHHHcCCCEEEECccccChhhCCHHHHHHHHHHHHHHhCCCCcEEEeCCcccHHHHHHHHHHHHhcCCCEEEEcCCCC
Confidence 46678899999999765442111111 133455666666677899998555445555553 3347999999999986
Q ss_pred H
Q 017718 311 Y 311 (367)
Q Consensus 311 ~ 311 (367)
+
T Consensus 108 ~ 108 (291)
T 3a5f_A 108 N 108 (291)
T ss_dssp S
T ss_pred C
Confidence 5
|
| >3tr2_A Orotidine 5'-phosphate decarboxylase; purines, pyrimidines, nucleosides, nucleotides, lyase; 2.00A {Coxiella burnetii} | Back alignment and structure |
|---|
Probab=93.35 E-value=0.22 Score=45.27 Aligned_cols=80 Identities=24% Similarity=0.366 Sum_probs=49.0
Q ss_pred HHHHHHHHcCCcEEEEcCCCCCCCCCccchHHHHHHHHHHhcCCCcEEEecCCCCHH-H---------HHHHHHcCCCEE
Q 017718 234 EDARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGT-D---------VFKALALGASGI 303 (367)
Q Consensus 234 ~~a~~~~~~G~d~i~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~~~via~GGI~~~~-d---------v~kal~lGAd~V 303 (367)
+-|+.+.++|++|+++|. .+ ...+++.++.+. ++...||+-.. + ..+++..|||.+
T Consensus 148 ~~A~~a~~~g~~GvV~s~------------~e-~~~ir~~~~~~f-l~vtPGIr~~g~~~~dQ~rv~t~~~~~~aGad~l 213 (239)
T 3tr2_A 148 RMATLAKSAGLDGVVCSA------------QE-AALLRKQFDRNF-LLVTPGIRLETDEKGDQKRVMTPRAAIQAGSDYL 213 (239)
T ss_dssp HHHHHHHHHTCCEEECCH------------HH-HHHHHTTCCTTS-EEEECCBC----------CCBCHHHHHHHTCSEE
T ss_pred HHHHHHHHcCCCEEEECc------------hh-HHHHHHhcCCCc-EEECCCcCCCCCCcCcccccCCHHHHHHcCCCEE
Confidence 346777888999999842 11 133444443334 77889998433 2 557888999999
Q ss_pred EechHHHHHhhccChHHHHHHHHHHHHHHH
Q 017718 304 FIGRPVVYSLAAEGEKGVRRVLEMLREEFE 333 (367)
Q Consensus 304 ~ig~~~l~~l~~~G~~~v~~~i~~l~~el~ 333 (367)
.+||+++.+ ..+ ...++.+++|+.
T Consensus 214 VvGr~I~~a---~dp---~~a~~~i~~~i~ 237 (239)
T 3tr2_A 214 VIGRPITQS---TDP---LKALEAIDKDIK 237 (239)
T ss_dssp EECHHHHTS---SSH---HHHHHHHHHHC-
T ss_pred EEChHHhCC---CCH---HHHHHHHHHHHh
Confidence 999997642 222 234556666543
|
| >3sz8_A 2-dehydro-3-deoxyphosphooctonate aldolase 2; ssgcid, structural genomics, seattle structural genomics CEN infectious disease; 2.05A {Burkholderia pseudomallei} PDB: 3tmq_A* 3und_A* | Back alignment and structure |
|---|
Probab=93.34 E-value=2 Score=39.94 Aligned_cols=88 Identities=17% Similarity=0.305 Sum_probs=52.9
Q ss_pred hcCCCEEEEecC--CHH----HHHHHHHcCCcEEEEcCCCCCCCCCc--cchHHHHHHHHHHhcCCCcEEEecCC-----
Q 017718 220 ITKLPILVKGVL--TAE----DARIAVQAGAAGIIVSNHGARQLDYV--PATIMALEEVVKATQGRIPVFLDGGV----- 286 (367)
Q Consensus 220 ~~~~Pv~vK~v~--~~~----~a~~~~~~G~d~i~vs~~gg~~~~~~--~~~~~~l~~i~~~~~~~~~via~GGI----- 286 (367)
.+++||++|..+ +++ .++.+.+.|-+-|++--.|- ..... ...+..++.+++..+ .+||+.|..=
T Consensus 132 ~~gkPVilK~G~~~t~~ei~~ave~i~~~Gn~~i~L~erg~-~y~~~~~~vdl~~i~~lk~~~~-~~pV~~D~sHs~q~p 209 (285)
T 3sz8_A 132 KAGKPVNVKKPQFMSPTQLKHVVSKCGEVGNDRVMLCERGS-SFGYDNLVVDMLGFRQMAETTG-GCPVIFDVTHSLQCR 209 (285)
T ss_dssp HTSSCEEEECCTTSCGGGTHHHHHHHHHTTCCCEEEEECCE-ECSSSCEECCTTHHHHHHHHTT-SCCEEEETTTTCC--
T ss_pred ccCCcEEEeCCCCCCHHHHHHHHHHHHHcCCCcEEEEeCCC-CCCCCcCccCHHHHHHHHHhCC-CCCEEEeCCCccccC
Confidence 367899999874 443 36667788988777743232 22111 124556776766541 4899986321
Q ss_pred ------CCH------HHHHHHHHcCCCEEEechHH
Q 017718 287 ------RRG------TDVFKALALGASGIFIGRPV 309 (367)
Q Consensus 287 ------~~~------~dv~kal~lGAd~V~ig~~~ 309 (367)
..| .-...|.++|||+++|=+-+
T Consensus 210 ~~~~~~s~G~r~~v~~~a~AAvA~GA~gl~IE~H~ 244 (285)
T 3sz8_A 210 DPLGDASGGRRRQVLDLARAGIAVGIAGLFLEAHP 244 (285)
T ss_dssp -------------HHHHHHHHHHHCCSEEEEEEES
T ss_pred CCcCCCCCCchhhHHHHHHHHHHhCCCEEEEEecc
Confidence 123 23456888999999997643
|
| >3iwp_A Copper homeostasis protein CUTC homolog; conserved sequence motif, metal-binding site, polymorphism, metal binding protein; 2.50A {Homo sapiens} | Back alignment and structure |
|---|
Probab=93.33 E-value=0.23 Score=46.30 Aligned_cols=72 Identities=26% Similarity=0.325 Sum_probs=54.0
Q ss_pred CCHHHHHHHHHcCCcEEEEcCCCCCCCCCccchHHHHHHHHHHhcCCCcEEE-----ecCCCCH--------HHHHHHHH
Q 017718 231 LTAEDARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFL-----DGGVRRG--------TDVFKALA 297 (367)
Q Consensus 231 ~~~~~a~~~~~~G~d~i~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~~~via-----~GGI~~~--------~dv~kal~ 297 (367)
.+.+++..+.+.|||.|-+-.. ....+-.|+...+..+++.+ ++||.+ .|++... .|+..+..
T Consensus 47 ~s~~~a~~A~~gGAdRIELc~~--l~~GGlTPS~g~i~~a~~~~--~ipV~vMIRPRgGdF~Ys~~E~~~M~~dI~~~~~ 122 (287)
T 3iwp_A 47 DSVESAVNAERGGADRIELCSG--LSEGGTTPSMGVLQVVKQSV--QIPVFVMIRPRGGDFLYSDREIEVMKADIRLAKL 122 (287)
T ss_dssp SSHHHHHHHHHHTCSEEEECBC--GGGTCBCCCHHHHHHHHTTC--CSCEEEECCSSSSCSCCCHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHhCCCEEEECCC--CCCCCCCCCHHHHHHHHHhc--CCCeEEEEecCCCCcccCHHHHHHHHHHHHHHHH
Confidence 7899999999999999998532 11112235666777776655 688888 4445544 79999999
Q ss_pred cCCCEEEec
Q 017718 298 LGASGIFIG 306 (367)
Q Consensus 298 lGAd~V~ig 306 (367)
+|||+|.+|
T Consensus 123 ~GAdGvVfG 131 (287)
T 3iwp_A 123 YGADGLVFG 131 (287)
T ss_dssp TTCSEEEEC
T ss_pred cCCCEEEEe
Confidence 999999999
|
| >2r8w_A AGR_C_1641P; APC7498, dihydrodipicolinate synthase, agrobacterium tumefac C58, structural genomics, PSI-2; HET: MSE; 1.80A {Agrobacterium tumefaciens str} | Back alignment and structure |
|---|
Probab=93.26 E-value=5.7 Score=37.58 Aligned_cols=183 Identities=14% Similarity=-0.001 Sum_probs=100.8
Q ss_pred ceEeCcccchhccCChhhHHHHHHHHHcCCceee--cC---CCCCCHHHHH-------hh-CC-CceEEEEeecCCHHHH
Q 017718 73 PIMIAPTAMQKMAHPEGEYATARAASAAGTIMTL--SS---WSTSSVEEVA-------ST-GP-GIRFFQLYVYKDRNVV 138 (367)
Q Consensus 73 Pi~iAPm~~~~l~~~~~e~~~a~aa~~~G~~~~v--s~---~~~~~~e~i~-------~~-~~-~~~~~QLy~~~d~~~~ 138 (367)
|.++.|+.-.+-.+.+.-..+.+-.-+.|+...+ || ..+.+.+|-. +. .. -|.+...- ..+-+..
T Consensus 40 ~a~vTPF~~dg~iD~~~l~~lv~~li~~Gv~Gl~v~GtTGE~~~Ls~eEr~~vi~~~ve~~~grvpViaGvg-~~st~ea 118 (332)
T 2r8w_A 40 AFPITPADEAGRVDIEAFSALIARLDAAEVDSVGILGSTGIYMYLTREERRRAIEAAATILRGRRTLMAGIG-ALRTDEA 118 (332)
T ss_dssp ECCCCCBCTTCCBCHHHHHHHHHHHHHHTCSEEEESSTTTTGGGSCHHHHHHHHHHHHHHHTTSSEEEEEEC-CSSHHHH
T ss_pred EEeeCCcCCCCCcCHHHHHHHHHHHHHcCCCEEEECccccChhhCCHHHHHHHHHHHHHHhCCCCcEEEecC-CCCHHHH
Confidence 4455666322222333334566666677875443 33 3456666522 22 22 45666664 3456667
Q ss_pred HHHHHHHHHcCCcEEEEecCCCCCCchhHHhhhhcCCCCccccccccccccCccccccchhhHHHhhhccCccccHHHHH
Q 017718 139 AQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLTLKNFQGLDLGKMDEANDSGLAAYVAGQIDRSLSWKWLQ 218 (367)
Q Consensus 139 ~~~l~ra~~~G~~ai~itvd~p~~g~r~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~l~ 218 (367)
.++.+.|+++|++++.+. .|.. ...+ ..++.+ .++.|.
T Consensus 119 i~la~~A~~~Gadavlv~--~P~Y-----------------~~~s-------------~~~l~~----------~f~~VA 156 (332)
T 2r8w_A 119 VALAKDAEAAGADALLLA--PVSY-----------------TPLT-------------QEEAYH----------HFAAVA 156 (332)
T ss_dssp HHHHHHHHHHTCSEEEEC--CCCS-----------------SCCC-------------HHHHHH----------HHHHHH
T ss_pred HHHHHHHHhcCCCEEEEC--CCCC-----------------CCCC-------------HHHHHH----------HHHHHH
Confidence 788999999999999873 2321 1000 001111 224666
Q ss_pred hhcCCCEEEEec-------CCHHHHHHHHHcC-CcEEEEcCCCCCCCCCcc-chHHHHHHHHHHhcCCCcEEEecCCCCH
Q 017718 219 TITKLPILVKGV-------LTAEDARIAVQAG-AAGIIVSNHGARQLDYVP-ATIMALEEVVKATQGRIPVFLDGGVRRG 289 (367)
Q Consensus 219 ~~~~~Pv~vK~v-------~~~~~a~~~~~~G-~d~i~vs~~gg~~~~~~~-~~~~~l~~i~~~~~~~~~via~GGI~~~ 289 (367)
+.+++||++=.+ .+++...++.+.. +-+|--+. | .. ..+..+.++++..++++.|+ +| +.
T Consensus 157 ~a~~lPiilYn~P~~tg~~l~~e~~~~La~~pnIvgiKdss--g-----d~~~~~~~~~~l~~~~~~~f~v~-~G---~D 225 (332)
T 2r8w_A 157 GATALPLAIYNNPTTTRFTFSDELLVRLAYIPNIRAIKMPL--P-----ADADYAGELARLRPKLSDDFAIG-YS---GD 225 (332)
T ss_dssp HHCSSCEEEECCHHHHCCCCCHHHHHHHHTSTTEEEEEECC--C-----TTCCHHHHHHHHTTTSCTTCEEE-EC---CH
T ss_pred HhcCCCEEEEeCccccCcCCCHHHHHHHHcCCCEEEEEeCC--C-----CchhHHHHHHHHHHhcCCCEEEE-eC---ch
Confidence 778999998764 5678777776542 22222211 1 00 01445555554444445444 45 34
Q ss_pred HHHHHHHHcCCCEEEechHH
Q 017718 290 TDVFKALALGASGIFIGRPV 309 (367)
Q Consensus 290 ~dv~kal~lGAd~V~ig~~~ 309 (367)
.-++.++.+||+++.-+..-
T Consensus 226 ~~~l~~l~~G~~G~is~~an 245 (332)
T 2r8w_A 226 WGCTDATLAGGDTWYSVVAG 245 (332)
T ss_dssp HHHHHHHHTTCSEEEESGGG
T ss_pred HHHHHHHHCCCCEEEeCHHH
Confidence 56788899999999988743
|
| >1dbt_A Orotidine 5'-phosphate decarboxylase; UMP, TIM barrel, lyase; HET: U5P; 2.40A {Bacillus subtilis} SCOP: c.1.2.3 | Back alignment and structure |
|---|
Probab=93.26 E-value=0.14 Score=46.46 Aligned_cols=76 Identities=22% Similarity=0.331 Sum_probs=49.0
Q ss_pred HHHHHcCCcEEEEcCCCCCCCCCccchHHHHHHHHHHhcCCCcEEEecCCCCHHH----------HHHHHHcCCCEEEec
Q 017718 237 RIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTD----------VFKALALGASGIFIG 306 (367)
Q Consensus 237 ~~~~~~G~d~i~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~~~via~GGI~~~~d----------v~kal~lGAd~V~ig 306 (367)
..+.+.|.++++.+. +.+.++++..+ ..+++.+|||+-... ..+++..|||.+.+|
T Consensus 149 ~~~~~~G~~g~v~~~-------------~~i~~lr~~~~-~~~i~v~gGI~~~~~~~~dq~rv~tp~~a~~aGad~iVvG 214 (239)
T 1dbt_A 149 KQAEESGLDGVVCSV-------------HEAKAIYQAVS-PSFLTVTPGIRMSEDAANDQVRVATPAIAREKGSSAIVVG 214 (239)
T ss_dssp HHHHHTTCSEEECCG-------------GGHHHHTTTSC-TTCEEEECCBCCTTSCCTTCSSCBCHHHHHHTTCSEEEEC
T ss_pred HHHHHhCCCEEEECH-------------HHHHHHHHhcC-CCcEEEeCCcCCCCCCccceeccCCHHHHHHcCCCEEEEC
Confidence 335678888876631 23344444443 468999999986443 367889999999999
Q ss_pred hHHHHHhhccChHHHHHHHHHHHHHH
Q 017718 307 RPVVYSLAAEGEKGVRRVLEMLREEF 332 (367)
Q Consensus 307 ~~~l~~l~~~G~~~v~~~i~~l~~el 332 (367)
|+++.+ .. ....++.+++++
T Consensus 215 r~I~~a---~d---p~~a~~~l~~~i 234 (239)
T 1dbt_A 215 RSITKA---ED---PVKAYKAVRLEW 234 (239)
T ss_dssp HHHHTS---SC---HHHHHHHHHHHH
T ss_pred hhhcCC---CC---HHHHHHHHHHHH
Confidence 998742 12 234555555554
|
| >2pp0_A L-talarate/galactarate dehydratase; enolase superfamily, LYA; 2.20A {Salmonella typhimurium} PDB: 2pp1_A* 2pp3_A* | Back alignment and structure |
|---|
Probab=93.22 E-value=0.91 Score=44.10 Aligned_cols=118 Identities=14% Similarity=0.075 Sum_probs=81.4
Q ss_pred CHHHHHHHHHHHHHcCCcEEEEecCCCCCCchhHHhhhhcCCCCccccccccccccCccccccchhhHHHhhhccCccc-
Q 017718 134 DRNVVAQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLTLKNFQGLDLGKMDEANDSGLAAYVAGQIDRSL- 212 (367)
Q Consensus 134 d~~~~~~~l~ra~~~G~~ai~itvd~p~~g~r~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~- 212 (367)
+++.+.+.++++.+.||+++=+.++.+- . +.+.
T Consensus 175 ~~e~~~~~a~~~~~~Gf~~vKik~g~~~-------~---------------------------------------~~d~e 208 (398)
T 2pp0_A 175 PLDQVLKNVVISRENGIGGIKLKVGQPN-------C---------------------------------------AEDIR 208 (398)
T ss_dssp CHHHHHHHHHHHHHTTCSCEEEECCCSC-------H---------------------------------------HHHHH
T ss_pred CHHHHHHHHHHHHHhCCCeEEEecCCCC-------H---------------------------------------HHHHH
Confidence 6777777888888999999887654210 0 0000
Q ss_pred cHHHHHhhc--CCCEEEEec--CCHHH----HHHHHHcCCcEEEEcCCCCCCCCCccchHHHHHHHHHHhcCCCcEEEec
Q 017718 213 SWKWLQTIT--KLPILVKGV--LTAED----ARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDG 284 (367)
Q Consensus 213 ~~~~l~~~~--~~Pv~vK~v--~~~~~----a~~~~~~G~d~i~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~~~via~G 284 (367)
..+.+|+.+ +++|.+..- .+.++ ++.+.+.|++.|-- ...+..++.+.++++.+ ++||++++
T Consensus 209 ~v~avR~avG~d~~l~vDan~~~~~~~ai~~~~~l~~~~i~~iEq--------P~~~~d~~~~~~l~~~~--~iPIa~dE 278 (398)
T 2pp0_A 209 RLTAVREALGDEFPLMVDANQQWDRETAIRMGRKMEQFNLIWIEE--------PLDAYDIEGHAQLAAAL--DTPIATGE 278 (398)
T ss_dssp HHHHHHHHHCSSSCEEEECTTCSCHHHHHHHHHHHGGGTCSCEEC--------CSCTTCHHHHHHHHHHC--SSCEEECT
T ss_pred HHHHHHHHcCCCCeEEEECCCCCCHHHHHHHHHHHHHcCCceeeC--------CCChhhHHHHHHHHhhC--CCCEEecC
Confidence 123666665 578888753 35555 44566678776531 11234677788888776 79999999
Q ss_pred CCCCHHHHHHHHHcC-CCEEEech
Q 017718 285 GVRRGTDVFKALALG-ASGIFIGR 307 (367)
Q Consensus 285 GI~~~~dv~kal~lG-Ad~V~ig~ 307 (367)
.+.+..++.+++..| +|.|++--
T Consensus 279 ~~~~~~~~~~~i~~~~~d~v~ik~ 302 (398)
T 2pp0_A 279 MLTSFREHEQLILGNASDFVQPDA 302 (398)
T ss_dssp TCCSHHHHHHHHHTTCCSEECCCH
T ss_pred CcCCHHHHHHHHHcCCCCEEEeCc
Confidence 999999999999987 89998854
|
| >1tkk_A Similar to chloromuconate cycloisomerase; epimerase, enolase super family,; 2.10A {Bacillus subtilis} SCOP: c.1.11.2 d.54.1.1 PDB: 1jpm_A | Back alignment and structure |
|---|
Probab=93.19 E-value=4 Score=38.78 Aligned_cols=119 Identities=16% Similarity=0.191 Sum_probs=81.7
Q ss_pred CCHHHHHHHHHHHHHcCCcEEEEecCCCCCCchhHHhhhhcCCCCccccccccccccCccccccchhhHHHhhhccCccc
Q 017718 133 KDRNVVAQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLTLKNFQGLDLGKMDEANDSGLAAYVAGQIDRSL 212 (367)
Q Consensus 133 ~d~~~~~~~l~ra~~~G~~ai~itvd~p~~g~r~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~ 212 (367)
.+++.+.+.++++.+.||+++=+.++++-. + .+.
T Consensus 139 ~~~~~~~~~a~~~~~~Gf~~iKik~g~~~~--~--------------------------------------------~d~ 172 (366)
T 1tkk_A 139 NSPEEMAADAENYLKQGFQTLKIKVGKDDI--A--------------------------------------------TDI 172 (366)
T ss_dssp CCHHHHHHHHHHHHHHTCCEEEEECCSSCH--H--------------------------------------------HHH
T ss_pred CCHHHHHHHHHHHHHcCCCeEEEEeCCCCH--H--------------------------------------------HHH
Confidence 567777777888888999999887654100 0 000
Q ss_pred -cHHHHHhhc--CCCEEEEec--CCHHH----HHHHHH--cCCcEEEEcCCCCCCCCCccchHHHHHHHHHHhcCCCcEE
Q 017718 213 -SWKWLQTIT--KLPILVKGV--LTAED----ARIAVQ--AGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVF 281 (367)
Q Consensus 213 -~~~~l~~~~--~~Pv~vK~v--~~~~~----a~~~~~--~G~d~i~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~~~vi 281 (367)
..+.+|+.+ ++++.+..- .+.++ ++.+.+ .|++.|- +. ..+..++.+.++++.+ ++||+
T Consensus 173 ~~v~avr~a~g~~~~l~vDan~~~~~~~a~~~~~~l~~~~~~i~~iE-------qP-~~~~d~~~~~~l~~~~--~ipIa 242 (366)
T 1tkk_A 173 ARIQEIRKRVGSAVKLRLDANQGWRPKEAVTAIRKMEDAGLGIELVE-------QP-VHKDDLAGLKKVTDAT--DTPIM 242 (366)
T ss_dssp HHHHHHHHHHCSSSEEEEECTTCSCHHHHHHHHHHHHHTTCCEEEEE-------CC-SCTTCHHHHHHHHHHC--SSCEE
T ss_pred HHHHHHHHHhCCCCeEEEECCCCCCHHHHHHHHHHHhhcCCCceEEE-------CC-CCcccHHHHHHHHhhC--CCCEE
Confidence 122566665 477777753 34444 456667 6766553 11 1234677888888776 79999
Q ss_pred EecCCCCHHHHHHHHHcC-CCEEEech
Q 017718 282 LDGGVRRGTDVFKALALG-ASGIFIGR 307 (367)
Q Consensus 282 a~GGI~~~~dv~kal~lG-Ad~V~ig~ 307 (367)
+++.+.+..|+.+++..| +|.|++--
T Consensus 243 ~dE~~~~~~~~~~~i~~~~~d~v~ik~ 269 (366)
T 1tkk_A 243 ADESVFTPRQAFEVLQTRSADLINIKL 269 (366)
T ss_dssp ECTTCCSHHHHHHHHHHTCCSEEEECH
T ss_pred EcCCCCCHHHHHHHHHhCCCCEEEeeh
Confidence 999999999999999976 89999964
|
| >1pii_A N-(5'phosphoribosyl)anthranilate isomerase; bifunctional(isomerase and synthase); 2.00A {Escherichia coli} SCOP: c.1.2.4 c.1.2.4 PDB: 1jcm_P* 2kzh_A | Back alignment and structure |
|---|
Probab=93.18 E-value=1.8 Score=43.01 Aligned_cols=86 Identities=22% Similarity=0.220 Sum_probs=61.4
Q ss_pred cHHHHHhhcCCCEEEEec-CCHHHHHHHHHcCCcEEEEcCCCCCCCCCccchHHHHHHHHHHhcCCCcEEEecCCCCHHH
Q 017718 213 SWKWLQTITKLPILVKGV-LTAEDARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTD 291 (367)
Q Consensus 213 ~~~~l~~~~~~Pv~vK~v-~~~~~a~~~~~~G~d~i~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~~~via~GGI~~~~d 291 (367)
++..+|+.+++||+-|.- .+......+..+|||+|-+.-.- ++ ...+..|.+..+.+ .+.++++ ++|.++
T Consensus 99 dL~~vr~~v~lPvLrKDFI~d~~Qi~ea~~~GAD~ILLi~a~---l~--~~~l~~l~~~a~~l--gm~~LvE--vh~~eE 169 (452)
T 1pii_A 99 FLPIVSQIAPQPILCKDFIIDPYQIYLARYYQADACLLMLSV---LD--DDQYRQLAAVAHSL--EMGVLTE--VSNEEE 169 (452)
T ss_dssp HHHHHHHHCCSCEEEESCCCSHHHHHHHHHTTCSEEEEETTT---CC--HHHHHHHHHHHHHT--TCEEEEE--ECSHHH
T ss_pred HHHHHHHhcCCCeEEEeccCCHHHHHHHHHcCCCEEEEEccc---CC--HHHHHHHHHHHHHc--CCeEEEE--eCCHHH
Confidence 345788889999999985 45555666999999999885321 21 12333343444444 5667765 789999
Q ss_pred HHHHHHcCCCEEEech
Q 017718 292 VFKALALGASGIFIGR 307 (367)
Q Consensus 292 v~kal~lGAd~V~ig~ 307 (367)
+.+++.+||+.+++-.
T Consensus 170 ~~~A~~lga~iIGinn 185 (452)
T 1pii_A 170 QERAIALGAKVVGINN 185 (452)
T ss_dssp HHHHHHTTCSEEEEES
T ss_pred HHHHHHCCCCEEEEeC
Confidence 9999999999998864
|
| >1twd_A Copper homeostasis protein CUTC; TIM-like protein, structural genomics, PSI, protein structure initiative; 1.70A {Shigella flexneri} SCOP: c.1.30.1 PDB: 1x7i_A 1x8c_A | Back alignment and structure |
|---|
Probab=93.10 E-value=0.79 Score=41.96 Aligned_cols=123 Identities=14% Similarity=0.180 Sum_probs=74.8
Q ss_pred eecCCHHHHHHHHHHHHHcCCcEEEEecCCCCCCchhHHhhhhcCCCCccccccccccccCccccccchhhHHHhhhccC
Q 017718 130 YVYKDRNVVAQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLTLKNFQGLDLGKMDEANDSGLAAYVAGQID 209 (367)
Q Consensus 130 y~~~d~~~~~~~l~ra~~~G~~ai~itvd~p~~g~r~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d 209 (367)
|...+-+.+.+-++.++++|++.+++.+-.+ |
T Consensus 67 Ys~~E~~~M~~Di~~~~~~GadGvV~G~Lt~------------------------------------------------d 98 (256)
T 1twd_A 67 YSDGEFAAILEDVRTVRELGFPGLVTGVLDV------------------------------------------------D 98 (256)
T ss_dssp CCHHHHHHHHHHHHHHHHTTCSEEEECCBCT------------------------------------------------T
T ss_pred CCHHHHHHHHHHHHHHHHcCCCEEEEeeECC------------------------------------------------C
Confidence 4344556777788889999999999855332 1
Q ss_pred ccccHH---HHHh-hcCCCEEEEec----CCH-HHHHHHHHcCCcEEEEcCCCCCCCCCccchHHHHHHHHHHhcCCCcE
Q 017718 210 RSLSWK---WLQT-ITKLPILVKGV----LTA-EDARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPV 280 (367)
Q Consensus 210 ~~~~~~---~l~~-~~~~Pv~vK~v----~~~-~~a~~~~~~G~d~i~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~~~v 280 (367)
..++++ .|.+ .-+.|+.+=-. .++ +..+.+.+.|++.|-.|| +. .....-.+.|.++.+..+ ++.|
T Consensus 99 g~iD~~~~~~Li~~a~~~~vTFHRAfD~~~d~~~ale~L~~lG~~rILTSG--~~--~~a~~g~~~L~~Lv~~a~-~i~I 173 (256)
T 1twd_A 99 GNVDMPRMEKIMAAAGPLAVTFHRAFDMCANPLYTLNNLAELGIARVLTSG--QK--SDALQGLSKIMELIAHRD-APII 173 (256)
T ss_dssp SSBCHHHHHHHHHHHTTSEEEECGGGGGCSCHHHHHHHHHHHTCCEEEECT--TS--SSTTTTHHHHHHHHTSSS-CCEE
T ss_pred CCcCHHHHHHHHHHhCCCcEEEECchhccCCHHHHHHHHHHcCCCEEECCC--CC--CCHHHHHHHHHHHHHhhC-CcEE
Confidence 122222 2222 22456554332 344 346778999999998754 32 123334556666655444 7888
Q ss_pred EEecCCCCHHHHHHHHHcCCCEEEec
Q 017718 281 FLDGGVRRGTDVFKALALGASGIFIG 306 (367)
Q Consensus 281 ia~GGI~~~~dv~kal~lGAd~V~ig 306 (367)
++-|||+. +.+.+.+..|++.+=.+
T Consensus 174 m~GgGv~~-~Ni~~l~~tGv~e~H~S 198 (256)
T 1twd_A 174 MAGAGVRA-ENLHHFLDAGVLEVHSS 198 (256)
T ss_dssp EEESSCCT-TTHHHHHHHTCSEEEEC
T ss_pred EecCCcCH-HHHHHHHHcCCCeEeEC
Confidence 88888864 44555557899887754
|
| >1eep_A Inosine 5'-monophosphate dehydrogenase; alpha-beta barrel, TIM barrel, IMPDH, IMP dehydrogenase, LOO purine biosynthesis, oxidoreductase; 2.40A {Borrelia burgdorferi} SCOP: c.1.5.1 | Back alignment and structure |
|---|
Probab=93.07 E-value=0.23 Score=48.44 Aligned_cols=67 Identities=15% Similarity=0.304 Sum_probs=50.9
Q ss_pred HHHHHHHHHcCCcEEEEcC-CCCCCCCCccchHHHHHHHHHHhcCCCcEEEecCCCCHHHHHHHHHcCCCEEEec
Q 017718 233 AEDARIAVQAGAAGIIVSN-HGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFIG 306 (367)
Q Consensus 233 ~~~a~~~~~~G~d~i~vs~-~gg~~~~~~~~~~~~l~~i~~~~~~~~~via~GGI~~~~dv~kal~lGAd~V~ig 306 (367)
.+.++.+.++|+|+|.+.. +| + ....++.+.++++.++ ++||++ |++.+.+++.++..+|||++.+|
T Consensus 155 ~~~a~~~~~~G~d~i~i~~~~g----~-~~~~~e~i~~ir~~~~-~~pviv-~~v~~~~~a~~a~~~Gad~I~vg 222 (404)
T 1eep_A 155 IERVEELVKAHVDILVIDSAHG----H-STRIIELIKKIKTKYP-NLDLIA-GNIVTKEAALDLISVGADCLKVG 222 (404)
T ss_dssp HHHHHHHHHTTCSEEEECCSCC----S-SHHHHHHHHHHHHHCT-TCEEEE-EEECSHHHHHHHHTTTCSEEEEC
T ss_pred HHHHHHHHHCCCCEEEEeCCCC----C-hHHHHHHHHHHHHHCC-CCeEEE-cCCCcHHHHHHHHhcCCCEEEEC
Confidence 4668888999999999831 22 1 1235667777777663 688887 77899999999999999999993
|
| >3usb_A Inosine-5'-monophosphate dehydrogenase; structural genomics, center for structural genomics of infec diseases, csgid, TIM barrel, CBS-domain; HET: MSE IMP; 2.38A {Bacillus anthracis} PDB: 3tsd_A* 3tsb_A* | Back alignment and structure |
|---|
Probab=93.00 E-value=0.25 Score=49.86 Aligned_cols=244 Identities=14% Similarity=0.117 Sum_probs=131.7
Q ss_pred ccccceeeccccC-CCCCCccceeEc-CeeeccceEeCcccchhccCChhhHHHHHHHHHcCCceeecCCCCCCHHHHH-
Q 017718 42 AFSRILFRPRILI-DVSKIDMNTTVL-GFKISMPIMIAPTAMQKMAHPEGEYATARAASAAGTIMTLSSWSTSSVEEVA- 118 (367)
Q Consensus 42 ~~~~i~l~pr~l~-~~~~vd~st~i~-g~~l~~Pi~iAPm~~~~l~~~~~e~~~a~aa~~~G~~~~vs~~~~~~~e~i~- 118 (367)
.||++.|+|..-. ..+++|++|.+- +..+..|++-|||...+ +..+|.+..+.|...++.. +.++++..
T Consensus 36 t~~d~~~~p~~~~~~~~~~~~~t~lt~~i~l~iPivsa~MdtvT------e~~lAia~a~~GgiGvIh~--~~~~~~q~~ 107 (511)
T 3usb_A 36 TFDDVLLVPAKSDVLPREVSVKTVLSESLQLNIPLISAGMDTVT------EADMAIAMARQGGLGIIHK--NMSIEQQAE 107 (511)
T ss_dssp CGGGEEECCCCCCCCTTTSBCCEEEETTEEESSSEEECSCTTTC------SHHHHHHHHHHTCEEEECS--SSCHHHHHH
T ss_pred ceEEEEEECCcccccccceEeeeEeecccccCCCccccCchhhc------HHHHHHHHHhcCCceeecc--cCCHHHHHH
Confidence 4899999996542 336789998875 68899999999996543 6678888888877666642 34444322
Q ss_pred ------hhC----CCceEEEEeecCCHHHHHHHHHHHHHcCCcEEEEecC----CCCCCchhHHhhhhcCCCCccccccc
Q 017718 119 ------STG----PGIRFFQLYVYKDRNVVAQLVRRAERAGFKAIALTVD----TPRLGRREADIKNRFTLPPFLTLKNF 184 (367)
Q Consensus 119 ------~~~----~~~~~~QLy~~~d~~~~~~~l~ra~~~G~~ai~itvd----~p~~g~r~~~~~~~~~~p~~~~~~~~ 184 (367)
... +.+.+ + ....-..++++...+.++..+.|.=+ ..+.=...+|++.... .......+
T Consensus 108 ~V~~V~~~~~~m~~d~v~--l---~~~~tv~ea~~~m~~~~~s~~pVvd~g~~~~lvGiVt~rDl~~~~~--~~~~V~~v 180 (511)
T 3usb_A 108 QVDKVKRSESGVISDPFF--L---TPEHQVYDAEHLMGKYRISGVPVVNNLDERKLVGIITNRDMRFIQD--YSIKISDV 180 (511)
T ss_dssp HHHHHHTSSSCSSSSCCC--B---CTTSBHHHHHHHHHHHCCSEEEEESCTTTCBEEEEEEHHHHTTCCC--SSSBHHHH
T ss_pred HHHHhhccccccccCCEE--E---CCCCCHHHHHHHHHHcCCcEEEEEecCCCCEEEEEEEehHhhhhcc--CCCcHHHh
Confidence 111 12222 1 12233556777778888888877532 1111112344442110 00000000
Q ss_pred ccc-ccCcccc-ccchhhHHHhhhcc---------Ccc----ccHH----HHHh-------hcCCCEEEEecCC---HHH
Q 017718 185 QGL-DLGKMDE-ANDSGLAAYVAGQI---------DRS----LSWK----WLQT-------ITKLPILVKGVLT---AED 235 (367)
Q Consensus 185 ~~~-~~~~~~~-~~~~~~~~~~~~~~---------d~~----~~~~----~l~~-------~~~~Pv~vK~v~~---~~~ 235 (367)
... ....... .......+.+.... +.. ++.+ .+.. ...+++.+....+ .+.
T Consensus 181 M~~~~~vtv~~~~~l~eal~~m~~~~i~~lpVVDe~g~l~GiIT~~Dil~~~~~p~a~~D~~~rl~V~aavg~~~d~~er 260 (511)
T 3usb_A 181 MTKEQLITAPVGTTLSEAEKILQKYKIEKLPLVDNNGVLQGLITIKDIEKVIEFPNSAKDKQGRLLVGAAVGVTADAMTR 260 (511)
T ss_dssp CCCCCCCCEETTCCHHHHHHHHHHHTCSEEEEECTTSBEEEEEEHHHHHHHHHCTTCCBCTTSCBCCEEEECSSTTHHHH
T ss_pred cccCCCEEECCCCCHHHHHHHHHHcCCCEEEEEeCCCCEeeeccHHHHHHhhhcccchhhhccceeeeeeeeeccchHHH
Confidence 000 0000000 00000011111000 011 1222 1111 0123444443322 566
Q ss_pred HHHHHHcCCcEEEEcCCCCCCCCCccchHHHHHHHHHHhcCCCcEEEecCCCCHHHHHHHHHcCCCEEEec
Q 017718 236 ARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFIG 306 (367)
Q Consensus 236 a~~~~~~G~d~i~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~~~via~GGI~~~~dv~kal~lGAd~V~ig 306 (367)
++.+.++|+|.|++....+ .....++.+.++++..+ ++||++ |+|.+.+++.++..+|||+|.+|
T Consensus 261 a~aLveaGvd~I~Id~a~g----~~~~v~~~i~~i~~~~~-~~~vi~-g~v~t~e~a~~~~~aGad~i~vg 325 (511)
T 3usb_A 261 IDALVKASVDAIVLDTAHG----HSQGVIDKVKEVRAKYP-SLNIIA-GNVATAEATKALIEAGANVVKVG 325 (511)
T ss_dssp HHHHHHTTCSEEEEECSCT----TSHHHHHHHHHHHHHCT-TSEEEE-EEECSHHHHHHHHHHTCSEEEEC
T ss_pred HHHHHhhccceEEeccccc----chhhhhhHHHHHHHhCC-CceEEe-eeeccHHHHHHHHHhCCCEEEEC
Confidence 8889999999999964322 12345677888877653 577775 78999999999999999999874
|
| >1hg3_A Triosephosphate isomerase; thermostability, tetrameric; 2.7A {Pyrococcus woesei} SCOP: c.1.1.1 | Back alignment and structure |
|---|
Probab=92.98 E-value=0.85 Score=41.01 Aligned_cols=90 Identities=21% Similarity=0.246 Sum_probs=56.7
Q ss_pred cCCCEEEEecCCHHHHHHHHHcCCcEEEEcCC--CCCC---CCCccchHHHHHHHHHHhcCCCcEEEecCCCCHHHHHHH
Q 017718 221 TKLPILVKGVLTAEDARIAVQAGAAGIIVSNH--GARQ---LDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKA 295 (367)
Q Consensus 221 ~~~Pv~vK~v~~~~~a~~~~~~G~d~i~vs~~--gg~~---~~~~~~~~~~l~~i~~~~~~~~~via~GGI~~~~dv~ka 295 (367)
.++-+++-. .+.++...+...+.+.|-+-+. -|+. ....+...+..-+..+....+++|+.-|||.++.|+..+
T Consensus 116 ~GL~~ivcV-ge~~e~~~~~~~~~~iIayep~waiGtG~~v~t~~~d~~~~~~~~ir~~~~~~~ilyggsV~~~n~~~~~ 194 (225)
T 1hg3_A 116 VGLMTMVCS-NNPAVSAAVAALNPDYVAVEPPELIGTGIPVSKAKPEVITNTVELVKKVNPEVKVLCGAGISTGEDVKKA 194 (225)
T ss_dssp HTCEEEEEE-SSHHHHHHHHTTCCSEEEECCTTTTTTSCCTTTSCTHHHHHHHHHHHHHCTTSEEEEESSCCSHHHHHHH
T ss_pred CCCEEEEEe-CCHHHHHHHhcCCCCEEEEeChhhhccCCCCCCCChhHHHHHHHHHHhccCCCEEEEeCCCCcHHHHHHH
Confidence 365555543 4455556667777775554331 2222 112222233222222333457999999999999999999
Q ss_pred HHcCCCEEEechHHHH
Q 017718 296 LALGASGIFIGRPVVY 311 (367)
Q Consensus 296 l~lGAd~V~ig~~~l~ 311 (367)
...|+|++.||++++.
T Consensus 195 ~~~~vDG~LVG~a~l~ 210 (225)
T 1hg3_A 195 IELGTVGVLLASGVTK 210 (225)
T ss_dssp HHTTCSEEEESHHHHT
T ss_pred HhCCCCEEEeCHHHHC
Confidence 9999999999999885
|
| >1geq_A Tryptophan synthase alpha-subunit; hyperthermophIle, pyrococ furiosus, X-RAY analysis, stability, calorimetry, lyase; 2.00A {Pyrococcus furiosus} SCOP: c.1.2.4 PDB: 1wdw_A* 2dzu_A 2dzp_A 2e09_A 2dzw_A 2dzs_A 2dzv_A 2dzt_A 2dzx_A | Back alignment and structure |
|---|
Probab=92.96 E-value=0.94 Score=40.61 Aligned_cols=83 Identities=13% Similarity=0.141 Sum_probs=52.6
Q ss_pred HHHHhhcCCCEEEEecCC-------HHHHHHHHHcCCcEEEEcCCCCCCCCCccchHHHHHHHHHHhcCCCcEEEecCCC
Q 017718 215 KWLQTITKLPILVKGVLT-------AEDARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVR 287 (367)
Q Consensus 215 ~~l~~~~~~Pv~vK~v~~-------~~~a~~~~~~G~d~i~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~~~via~GGI~ 287 (367)
+.+|+.+++||.+.+..+ .+.++.+.++|+|+|++..-. ....+.+.+..+.. ...++..=...
T Consensus 73 ~~i~~~~~~pv~~~~~~~~~~~~~~~~~~~~~~~~Gad~v~~~~~~-------~~~~~~~~~~~~~~--g~~~~~~i~~~ 143 (248)
T 1geq_A 73 KEFRRHSSTPIVLMTYYNPIYRAGVRNFLAEAKASGVDGILVVDLP-------VFHAKEFTEIAREE--GIKTVFLAAPN 143 (248)
T ss_dssp HHHHTTCCCCEEEEECHHHHHHHCHHHHHHHHHHHTCCEEEETTCC-------GGGHHHHHHHHHHH--TCEEEEEECTT
T ss_pred HHHHhhCCCCEEEEeccchhhhcCHHHHHHHHHHCCCCEEEECCCC-------hhhHHHHHHHHHHh--CCCeEEEECCC
Confidence 378887889999877434 377999999999999994311 12223332333333 23333322345
Q ss_pred CHHHHHHHHHcCCC-EEEec
Q 017718 288 RGTDVFKALALGAS-GIFIG 306 (367)
Q Consensus 288 ~~~dv~kal~lGAd-~V~ig 306 (367)
+..+.++.+..++| .+.+.
T Consensus 144 t~~e~~~~~~~~~d~~i~~~ 163 (248)
T 1geq_A 144 TPDERLKVIDDMTTGFVYLV 163 (248)
T ss_dssp CCHHHHHHHHHHCSSEEEEE
T ss_pred CHHHHHHHHHhcCCCeEEEE
Confidence 78888999988888 55443
|
| >1nsj_A PRAI, phosphoribosyl anthranilate isomerase; thermostability; 2.00A {Thermotoga maritima} SCOP: c.1.2.4 PDB: 1lbm_A 1dl3_A | Back alignment and structure |
|---|
Probab=92.90 E-value=1.5 Score=38.67 Aligned_cols=79 Identities=14% Similarity=0.180 Sum_probs=51.4
Q ss_pred CCCEEEEec-CCHHHHHHHHHcCCcEEEEcCC----CCC--CCCCccchHHHHHHHHHHhcCCCcEEEecCCCCHHHHHH
Q 017718 222 KLPILVKGV-LTAEDARIAVQAGAAGIIVSNH----GAR--QLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFK 294 (367)
Q Consensus 222 ~~Pv~vK~v-~~~~~a~~~~~~G~d~i~vs~~----gg~--~~~~~~~~~~~l~~i~~~~~~~~~via~GGI~~~~dv~k 294 (367)
++|++-... .+.++...+.+..+|++.+... ||+ .+||. .++++. ..+.|+|..||+ +++.+.+
T Consensus 97 ~~~vika~~v~~~~~l~~~~~~~~d~~LlD~~~~~~GGtG~~fdw~-----~l~~~~---~~~~p~~LAGGL-~peNV~~ 167 (205)
T 1nsj_A 97 RILVIKAVGVSNERDMERALNYREFPILLDTKTPEYGGSGKTFDWS-----LILPYR---DRFRYLVLSGGL-NPENVRS 167 (205)
T ss_dssp TSEEEEEEEESSHHHHHHHGGGTTSCEEEEESCSSSSSCCSCCCGG-----GTGGGG---GGSSCEEEESSC-CTTTHHH
T ss_pred CCCEEEEEEcCCHHHHHHHHHcCCCEEEECCCCCCCCCCCCccCHH-----HHHhhh---cCCCcEEEECCC-CHHHHHH
Confidence 366653322 3455555555555999998753 443 34443 333221 126799999999 6788988
Q ss_pred HHH-cCCCEEEechHH
Q 017718 295 ALA-LGASGIFIGRPV 309 (367)
Q Consensus 295 al~-lGAd~V~ig~~~ 309 (367)
++. +++.+|=+.+.+
T Consensus 168 ai~~~~p~gVDvsSGv 183 (205)
T 1nsj_A 168 AIDVVRPFAVDVSSGV 183 (205)
T ss_dssp HHHHHCCSEEEESGGG
T ss_pred HHHhcCCCEEEECCce
Confidence 887 699999999844
|
| >3cpr_A Dihydrodipicolinate synthetase; (beta/alpha)8-barrel fold with A C-terminal alpha-helical segment, amino-acid biosynthesis, cytoplasm; HET: MCL; 2.20A {Corynebacterium glutamicum} | Back alignment and structure |
|---|
Probab=92.80 E-value=6.2 Score=36.76 Aligned_cols=178 Identities=17% Similarity=0.180 Sum_probs=99.1
Q ss_pred ceEeCcccchhccCChhhHHHHHHHHHcCCcee--ec---CCCCCCHHHHH-------hh-CC-CceEEEEeecCCHHHH
Q 017718 73 PIMIAPTAMQKMAHPEGEYATARAASAAGTIMT--LS---SWSTSSVEEVA-------ST-GP-GIRFFQLYVYKDRNVV 138 (367)
Q Consensus 73 Pi~iAPm~~~~l~~~~~e~~~a~aa~~~G~~~~--vs---~~~~~~~e~i~-------~~-~~-~~~~~QLy~~~d~~~~ 138 (367)
|.++.|+.-.+-.+.+.-..+.+-.-+.|+... .| +..+.+.||-. +. .. -|.+...- ..+-+..
T Consensus 22 ~a~vTPf~~dg~iD~~~l~~lv~~li~~Gv~gl~v~GttGE~~~Ls~~Er~~v~~~~~~~~~grvpviaGvg-~~st~~a 100 (304)
T 3cpr_A 22 VAMVTPFTESGDIDIAAGREVAAYLVDKGLDSLVLAGTTGESPTTTAAEKLELLKAVREEVGDRAKLIAGVG-TNNTRTS 100 (304)
T ss_dssp EECCCCBCTTSCBCHHHHHHHHHHHHHTTCCEEEESSTTTTTTTSCHHHHHHHHHHHHHHHTTTSEEEEECC-CSCHHHH
T ss_pred EeeeccCCCCCCcCHHHHHHHHHHHHHcCCCEEEECccccChhhCCHHHHHHHHHHHHHHhCCCCcEEecCC-CCCHHHH
Confidence 445667643222333333456666667787543 33 34556766532 22 22 35666654 3466667
Q ss_pred HHHHHHHHHcCCcEEEEecCCCCCCchhHHhhhhcCCCCccccccccccccCccccccchhhHHHhhhccCccccHHHHH
Q 017718 139 AQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLTLKNFQGLDLGKMDEANDSGLAAYVAGQIDRSLSWKWLQ 218 (367)
Q Consensus 139 ~~~l~ra~~~G~~ai~itvd~p~~g~r~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~l~ 218 (367)
.++.+.|+++|++++.+. .|.. ...+ ..++.+ .++.+.
T Consensus 101 i~la~~A~~~Gadavlv~--~P~y-----------------~~~~-------------~~~l~~----------~f~~ia 138 (304)
T 3cpr_A 101 VELAEAAASAGADGLLVV--TPYY-----------------SKPS-------------QEGLLA----------HFGAIA 138 (304)
T ss_dssp HHHHHHHHHTTCSEEEEE--CCCS-----------------SCCC-------------HHHHHH----------HHHHHH
T ss_pred HHHHHHHHhcCCCEEEEC--CCCC-----------------CCCC-------------HHHHHH----------HHHHHH
Confidence 789999999999999874 2331 0000 001111 224666
Q ss_pred hhcCCCEEEEec-------CCHHHHHHHHHcC-CcEEEEcCCCCCCCCCccchHHHHHHHHHHhcCCCcEEEecCCCCHH
Q 017718 219 TITKLPILVKGV-------LTAEDARIAVQAG-AAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGT 290 (367)
Q Consensus 219 ~~~~~Pv~vK~v-------~~~~~a~~~~~~G-~d~i~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~~~via~GGI~~~~ 290 (367)
+.+++||++=.+ .+++...++.+.. +-+|--+ . ..+..+.++.+.. ++.|+ +|. ..
T Consensus 139 ~a~~lPiilYn~P~~tg~~l~~~~~~~La~~pnIvgiKds--s--------gd~~~~~~~~~~~--~f~v~-~G~---d~ 202 (304)
T 3cpr_A 139 AATEVPICLYDIPGRSGIPIESDTMRRLSELPTILAVXDA--K--------GDLVAATSLIKET--GLAWY-SGD---DP 202 (304)
T ss_dssp HHCCSCEEEEECHHHHSSCCCHHHHHHHTTSTTEEEEEEC--S--------CCHHHHHHHHHHH--CCEEE-ECS---GG
T ss_pred HhcCCCEEEEeCccccCcCCCHHHHHHHHcCCCEEEEecC--C--------CCHHHHHHHHHhc--CEEEE-ECc---HH
Confidence 778999998775 5678777776532 1122211 1 1234444454443 45553 452 34
Q ss_pred HHHHHHHcCCCEEEechHH
Q 017718 291 DVFKALALGASGIFIGRPV 309 (367)
Q Consensus 291 dv~kal~lGAd~V~ig~~~ 309 (367)
-++.++.+||+++.-+..-
T Consensus 203 ~~l~~l~~G~~G~is~~an 221 (304)
T 3cpr_A 203 LNLVWLALGGSGFISVIGH 221 (304)
T ss_dssp GHHHHHHTTCCEEEESGGG
T ss_pred HHHHHHHCCCCEEEecHHH
Confidence 4678899999999888753
|
| >3qze_A DHDPS, dihydrodipicolinate synthase; alpha beta barrel, cytoplasmic; 1.59A {Pseudomonas aeruginosa} PDB: 3puo_A* 3noe_A 3ps7_A* 3s8h_A | Back alignment and structure |
|---|
Probab=92.79 E-value=6.4 Score=36.89 Aligned_cols=181 Identities=15% Similarity=0.138 Sum_probs=103.2
Q ss_pred ceEeCcccchhccCChhhHHHHHHHHHcCCcee--ec---CCCCCCHHHHH-------hh-CC-CceEEEEeecCCHHHH
Q 017718 73 PIMIAPTAMQKMAHPEGEYATARAASAAGTIMT--LS---SWSTSSVEEVA-------ST-GP-GIRFFQLYVYKDRNVV 138 (367)
Q Consensus 73 Pi~iAPm~~~~l~~~~~e~~~a~aa~~~G~~~~--vs---~~~~~~~e~i~-------~~-~~-~~~~~QLy~~~d~~~~ 138 (367)
|.++.|+.-.+-.+.+.-..+.+-.-+.|+... .| +..+.+.+|-. +. .. -|.+...- ..+-+..
T Consensus 29 ~a~vTPf~~dg~iD~~~l~~lv~~li~~Gv~Gl~v~GtTGE~~~Ls~~Er~~v~~~~v~~~~grvpViaGvg-~~st~ea 107 (314)
T 3qze_A 29 VALVTPFDAQGRLDWDSLAKLVDFHLQEGTNAIVAVGTTGESATLDVEEHIQVIRRVVDQVKGRIPVIAGTG-ANSTREA 107 (314)
T ss_dssp EECCCCBCTTSCBCHHHHHHHHHHHHHHTCCEEEESSGGGTGGGCCHHHHHHHHHHHHHHHTTSSCEEEECC-CSSHHHH
T ss_pred EeeECCCCCCCCcCHHHHHHHHHHHHHcCCCEEEECccccChhhCCHHHHHHHHHHHHHHhCCCCcEEEeCC-CcCHHHH
Confidence 455667643332333333456666667787533 23 34556666532 22 22 35666654 3466667
Q ss_pred HHHHHHHHHcCCcEEEEecCCCCCCchhHHhhhhcCCCCccccccccccccCccccccchhhHHHhhhccCccccHHHHH
Q 017718 139 AQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLTLKNFQGLDLGKMDEANDSGLAAYVAGQIDRSLSWKWLQ 218 (367)
Q Consensus 139 ~~~l~ra~~~G~~ai~itvd~p~~g~r~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~l~ 218 (367)
.++.+.|+++|++++.+. .|.. ...+ ..++.+ .++.+.
T Consensus 108 i~la~~A~~~Gadavlv~--~P~y-----------------~~~s-------------~~~l~~----------~f~~va 145 (314)
T 3qze_A 108 VALTEAAKSGGADACLLV--TPYY-----------------NKPT-------------QEGMYQ----------HFRHIA 145 (314)
T ss_dssp HHHHHHHHHTTCSEEEEE--CCCS-----------------SCCC-------------HHHHHH----------HHHHHH
T ss_pred HHHHHHHHHcCCCEEEEc--CCCC-----------------CCCC-------------HHHHHH----------HHHHHH
Confidence 789999999999999873 2321 0000 001111 124677
Q ss_pred hhcCCCEEEEec-------CCHHHHHHHHHcCCcEEEEcCCCCCCCCCccchHHHHHHHHHHhcCCCcEEEecCCCCHHH
Q 017718 219 TITKLPILVKGV-------LTAEDARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTD 291 (367)
Q Consensus 219 ~~~~~Pv~vK~v-------~~~~~a~~~~~~G~d~i~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~~~via~GGI~~~~d 291 (367)
+.+++||++=.+ .+++...++.+.. ..+-+= +. ...+..+.++.+..++++.|+ +|. ..-
T Consensus 146 ~a~~lPiilYn~P~~tg~~l~~~~~~~La~~p-nIvgiK-------ds-sgd~~~~~~~~~~~~~~f~v~-~G~---d~~ 212 (314)
T 3qze_A 146 EAVAIPQILYNVPGRTSCDMLPETVERLSKVP-NIIGIK-------EA-TGDLQRAKEVIERVGKDFLVY-SGD---DAT 212 (314)
T ss_dssp HHSCSCEEEEECHHHHSCCCCHHHHHHHHTST-TEEEEE-------EC-SCCHHHHHHHHHHSCTTSEEE-ESC---GGG
T ss_pred HhcCCCEEEEeCccccCCCCCHHHHHHHhcCC-CEEEEE-------cC-CCCHHHHHHHHHHcCCCeEEE-ecC---hHH
Confidence 778999999875 5678777776542 222121 11 123445556666665566664 453 234
Q ss_pred HHHHHHcCCCEEEechHH
Q 017718 292 VFKALALGASGIFIGRPV 309 (367)
Q Consensus 292 v~kal~lGAd~V~ig~~~ 309 (367)
++.++++||+++.-+..-
T Consensus 213 ~l~~l~~Ga~G~is~~an 230 (314)
T 3qze_A 213 AVELMLLGGKGNISVTAN 230 (314)
T ss_dssp HHHHHHTTCCEEEESGGG
T ss_pred HHHHHHCCCCEEEecHHh
Confidence 778899999999888743
|
| >3l21_A DHDPS, dihydrodipicolinate synthase; DAPA, dimer, RV2753C, lysine biosynthesis, amino-acid biosynthesis, diaminopimelate biosynthesis; HET: KPI CME; 2.10A {Mycobacterium tuberculosis} SCOP: c.1.10.1 PDB: 1xxx_A | Back alignment and structure |
|---|
Probab=92.75 E-value=6.3 Score=36.73 Aligned_cols=180 Identities=15% Similarity=0.174 Sum_probs=101.9
Q ss_pred ceEeCcccchhccCChhhHHHHHHHHHcCCceee--c---CCCCCCHHHHH-------hh-CC-CceEEEEeecCCHHHH
Q 017718 73 PIMIAPTAMQKMAHPEGEYATARAASAAGTIMTL--S---SWSTSSVEEVA-------ST-GP-GIRFFQLYVYKDRNVV 138 (367)
Q Consensus 73 Pi~iAPm~~~~l~~~~~e~~~a~aa~~~G~~~~v--s---~~~~~~~e~i~-------~~-~~-~~~~~QLy~~~d~~~~ 138 (367)
|.++.|+.-.+-.+.+.-..+.+-..+.|+...+ | +..+.+.||-. +. .. -|.+...- ..+-+..
T Consensus 21 ~a~vTPf~~dg~iD~~~l~~lv~~li~~Gv~gi~v~GttGE~~~Lt~~Er~~v~~~~~~~~~grvpviaGvg-~~~t~~a 99 (304)
T 3l21_A 21 TAMVTPFSGDGSLDTATAARLANHLVDQGCDGLVVSGTTGESPTTTDGEKIELLRAVLEAVGDRARVIAGAG-TYDTAHS 99 (304)
T ss_dssp EECCCCBCTTSCBCHHHHHHHHHHHHHTTCSEEEESSTTTTGGGSCHHHHHHHHHHHHHHHTTTSEEEEECC-CSCHHHH
T ss_pred EEEECCCCCCCCcCHHHHHHHHHHHHHcCCCEEEeCccccchhhCCHHHHHHHHHHHHHHhCCCCeEEEeCC-CCCHHHH
Confidence 5556776433333333344666677778876433 3 33455666522 22 22 35666653 4566777
Q ss_pred HHHHHHHHHcCCcEEEEecCCCCCCchhHHhhhhcCCCCccccccccccccCccccccchhhHHHhhhccCccccHHHHH
Q 017718 139 AQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLTLKNFQGLDLGKMDEANDSGLAAYVAGQIDRSLSWKWLQ 218 (367)
Q Consensus 139 ~~~l~ra~~~G~~ai~itvd~p~~g~r~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~l~ 218 (367)
.++.+.|+++|++++.+. .|.. ...+ ..++.+ .++.+.
T Consensus 100 i~la~~a~~~Gadavlv~--~P~y-----------------~~~s-------------~~~l~~----------~f~~va 137 (304)
T 3l21_A 100 IRLAKACAAEGAHGLLVV--TPYY-----------------SKPP-------------QRGLQA----------HFTAVA 137 (304)
T ss_dssp HHHHHHHHHHTCSEEEEE--CCCS-----------------SCCC-------------HHHHHH----------HHHHHH
T ss_pred HHHHHHHHHcCCCEEEEC--CCCC-----------------CCCC-------------HHHHHH----------HHHHHH
Confidence 889999999999999873 2321 0000 001111 234677
Q ss_pred hhcCCCEEEEec-------CCHHHHHHHHHcC-CcEEEEcCCCCCCCCCccchHHHHHHHHHHhcCCCcEEEecCCCCHH
Q 017718 219 TITKLPILVKGV-------LTAEDARIAVQAG-AAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGT 290 (367)
Q Consensus 219 ~~~~~Pv~vK~v-------~~~~~a~~~~~~G-~d~i~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~~~via~GGI~~~~ 290 (367)
+.+++||++=.+ .+++...++.+.. +-+|.-+ . ..+..+.++.. +.++.|+ +| +..
T Consensus 138 ~a~~lPiilYn~P~~tg~~l~~~~~~~La~~pnIvgiKds--s--------gd~~~~~~~~~--~~~f~v~-~G---~d~ 201 (304)
T 3l21_A 138 DATELPMLLYDIPGRSAVPIEPDTIRALASHPNIVGVXDA--K--------ADLHSGAQIMA--DTGLAYY-SG---DDA 201 (304)
T ss_dssp TSCSSCEEEEECHHHHSSCCCHHHHHHHHTSTTEEEEEEC--S--------CCHHHHHHHHH--HHCCEEE-ES---SGG
T ss_pred HhcCCCEEEEeCccccCCCCCHHHHHHHhcCCCEEEEECC--C--------CCHHHHHHHhc--CCCeEEE-eC---chH
Confidence 778999998864 5678777776543 1222211 1 12333334432 2266665 45 234
Q ss_pred HHHHHHHcCCCEEEechHHHH
Q 017718 291 DVFKALALGASGIFIGRPVVY 311 (367)
Q Consensus 291 dv~kal~lGAd~V~ig~~~l~ 311 (367)
-.+.++.+||+++.-+..-++
T Consensus 202 ~~l~~l~~Ga~G~is~~~n~~ 222 (304)
T 3l21_A 202 LNLPWLRMGATGFISVIAHLA 222 (304)
T ss_dssp GHHHHHHHTCCEEEESTHHHH
T ss_pred HHHHHHHcCCCEEEecHHhhh
Confidence 567889999999988875544
|
| >2qdd_A Mandelate racemase/muconate lactonizing enzyme; enolase, structural genomics, PSI, protein structu initiative, nysgrc; 2.30A {Roseovarius nubinhibens} PDB: 3fvd_B | Back alignment and structure |
|---|
Probab=92.74 E-value=3.4 Score=39.58 Aligned_cols=117 Identities=15% Similarity=0.137 Sum_probs=79.2
Q ss_pred CCHHHHHHHHHHHHHcCCcEEEEecCCCCCCchhHHhhhhcCCCCccccccccccccCccccccchhhHHHhhhccCccc
Q 017718 133 KDRNVVAQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLTLKNFQGLDLGKMDEANDSGLAAYVAGQIDRSL 212 (367)
Q Consensus 133 ~d~~~~~~~l~ra~~~G~~ai~itvd~p~~g~r~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~ 212 (367)
.+++.+.+.++++.+.||+++-+.+++|-. + .+.
T Consensus 144 ~~~e~~~~~a~~~~~~Gf~~iKik~g~~~~--~--------------------------------------------~~~ 177 (378)
T 2qdd_A 144 GTPDQMLGLIAEAAAQGYRTHSAKIGGSDP--A--------------------------------------------QDI 177 (378)
T ss_dssp CCHHHHHHHHHHHHHHTCCEEEEECCSSCH--H--------------------------------------------HHH
T ss_pred CCHHHHHHHHHHHHHHhhhheeecCCCCCh--H--------------------------------------------HHH
Confidence 578888888888889999999887765310 0 000
Q ss_pred -cHHHHHhhc--CCCEEEEec--CCHHHHHHHHH---cCCcEEEEcCCCCCCCCCccchHHHHHHHHHHhcCCCcEEEec
Q 017718 213 -SWKWLQTIT--KLPILVKGV--LTAEDARIAVQ---AGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDG 284 (367)
Q Consensus 213 -~~~~l~~~~--~~Pv~vK~v--~~~~~a~~~~~---~G~d~i~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~~~via~G 284 (367)
..+.+|+.+ ++|+.++.- .+.+++....+ .|+ .|- +. -+ .++.+.++++.+ ++||++++
T Consensus 178 e~v~avr~a~g~~~~l~vDan~~~~~~~a~~~~~~l~~~i-~iE-------qP--~~-d~~~~~~l~~~~--~iPI~~dE 244 (378)
T 2qdd_A 178 ARIEAISAGLPDGHRVTFDVNRAWTPAIAVEVLNSVRARD-WIE-------QP--CQ-TLDQCAHVARRV--ANPIMLDE 244 (378)
T ss_dssp HHHHHHHHSCCTTCEEEEECTTCCCHHHHHHHHTSCCCCC-EEE-------CC--SS-SHHHHHHHHTTC--CSCEEECT
T ss_pred HHHHHHHHHhCCCCEEEEeCCCCCCHHHHHHHHHHhCCCc-EEE-------cC--CC-CHHHHHHHHHhC--CCCEEECC
Confidence 122566665 477877754 35666544332 344 321 11 12 677788887655 79999999
Q ss_pred CCCCHHHHHHHHHcC-CCEEEechH
Q 017718 285 GVRRGTDVFKALALG-ASGIFIGRP 308 (367)
Q Consensus 285 GI~~~~dv~kal~lG-Ad~V~ig~~ 308 (367)
.+.+..|+.+++..| +|.|++-..
T Consensus 245 ~~~~~~~~~~~i~~~~~d~v~ik~~ 269 (378)
T 2qdd_A 245 CLHEFSDHLAAWSRGACEGVKIKPN 269 (378)
T ss_dssp TCCSHHHHHHHHHHTCCSEEEECHH
T ss_pred CcCCHHHHHHHHHhCCCCEEEeccc
Confidence 999999999999876 899999653
|
| >2oz8_A MLL7089 protein; structural genomics, unknown function, PSI-2, protein struct initiative; 2.48A {Mesorhizobium loti} | Back alignment and structure |
|---|
Probab=92.63 E-value=5.6 Score=38.28 Aligned_cols=117 Identities=13% Similarity=0.096 Sum_probs=78.7
Q ss_pred CHHHHHHHHHHHHHcCCcEEEEecCCCCCCchhHHhhhhcCCCCccccccccccccCccccccchhhHHHhhhccCccc-
Q 017718 134 DRNVVAQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLTLKNFQGLDLGKMDEANDSGLAAYVAGQIDRSL- 212 (367)
Q Consensus 134 d~~~~~~~l~ra~~~G~~ai~itvd~p~~g~r~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~- 212 (367)
+.+.+.+.++++.+.||+++=+.++.+-. + .+.
T Consensus 145 ~~~~~~~~a~~~~~~Gf~~vKik~g~~~~---~-------------------------------------------~~~e 178 (389)
T 2oz8_A 145 DDDAFVSLFSHAASIGYSAFKIKVGHRDF---D-------------------------------------------RDLR 178 (389)
T ss_dssp CHHHHHHHHHHHHHTTCCEEEEECCCSSH---H-------------------------------------------HHHH
T ss_pred CHHHHHHHHHHHHHhCCCEEEEccCCCCH---H-------------------------------------------HHHH
Confidence 67777788888889999999887653100 0 000
Q ss_pred cHHHHHhhc--CCCEEEEec--CCHHH----HHHHHH--cCCcEEEEcCCCCCCCCCccchHHHHHHHHHHhcCCCcEEE
Q 017718 213 SWKWLQTIT--KLPILVKGV--LTAED----ARIAVQ--AGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFL 282 (367)
Q Consensus 213 ~~~~l~~~~--~~Pv~vK~v--~~~~~----a~~~~~--~G~d~i~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~~~via 282 (367)
..+.+|+.+ +++|.+..- .+.++ ++.+.+ .+++.|- + ...+..++.+.++++.++ ++||++
T Consensus 179 ~v~avR~a~G~~~~l~vDan~~~~~~~a~~~~~~l~~~g~~i~~iE-------q-P~~~~~~~~~~~l~~~~~-~iPIa~ 249 (389)
T 2oz8_A 179 RLELLKTCVPAGSKVMIDPNEAWTSKEALTKLVAIREAGHDLLWVE-------D-PILRHDHDGLRTLRHAVT-WTQINS 249 (389)
T ss_dssp HHHHHHTTSCTTCEEEEECTTCBCHHHHHHHHHHHHHTTCCCSEEE-------S-CBCTTCHHHHHHHHHHCC-SSEEEE
T ss_pred HHHHHHHhhCCCCeEEEECCCCCCHHHHHHHHHHHHhcCCCceEEe-------C-CCCCcCHHHHHHHHhhCC-CCCEEe
Confidence 122666665 467777643 34444 455667 5555442 1 112235777888877652 699999
Q ss_pred ecCCCCHHHHHHHHHcC-CCEEEec
Q 017718 283 DGGVRRGTDVFKALALG-ASGIFIG 306 (367)
Q Consensus 283 ~GGI~~~~dv~kal~lG-Ad~V~ig 306 (367)
++.+ +..|+.+++..| +|.|++.
T Consensus 250 dE~~-~~~~~~~~i~~~~~d~v~ik 273 (389)
T 2oz8_A 250 GEYL-DLQGKRLLLEAHAADILNVH 273 (389)
T ss_dssp CTTC-CHHHHHHHHHTTCCSEEEEC
T ss_pred CCCC-CHHHHHHHHHcCCCCEEEEC
Confidence 9999 999999999987 8999996
|
| >4dwd_A Mandelate racemase/muconate lactonizing enzyme, C domain protein; structural genomics, EFI, enzyme function initiative, metal protein; HET: MSE; 1.50A {Paracoccus denitrificans} PDB: 3n4e_A* | Back alignment and structure |
|---|
Probab=92.63 E-value=3.6 Score=39.84 Aligned_cols=125 Identities=14% Similarity=0.054 Sum_probs=85.2
Q ss_pred CCHHHHHHHH-HHHHHcCCcEEEEecCCCCCCchhHHhhhhcCCCCccccccccccccCccccccchhhHHHhhhccCcc
Q 017718 133 KDRNVVAQLV-RRAERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLTLKNFQGLDLGKMDEANDSGLAAYVAGQIDRS 211 (367)
Q Consensus 133 ~d~~~~~~~l-~ra~~~G~~ai~itvd~p~~g~r~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~ 211 (367)
.+++.+.+.+ +++.+.|++++=+.++++... .+ .. .+.+
T Consensus 138 ~~~e~~~~~a~~~~~~~G~~~~KlKvG~~~~~-----------~~-----~~------------------------~~~d 177 (393)
T 4dwd_A 138 RSVDEVVREVARRVEAEQPAAVKIRWDGDRTR-----------CD-----VD------------------------IPGD 177 (393)
T ss_dssp SCHHHHHHHHHHHHHHHCCSEEEEECCCCTTC-----------CS-----CC------------------------HHHH
T ss_pred CCHHHHHHHHHHHHHHcCCCEEEEccCCCCcc-----------cc-----cC------------------------HHHH
Confidence 4567777777 777788999998877653210 00 00 0011
Q ss_pred c-cHHHHHhhc--CCCEEEEec--CCHHH----HHHHHHcCCcEEEEcCCCCCCCCCccchHHHHHHHHHHhcCCCcEEE
Q 017718 212 L-SWKWLQTIT--KLPILVKGV--LTAED----ARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFL 282 (367)
Q Consensus 212 ~-~~~~l~~~~--~~Pv~vK~v--~~~~~----a~~~~~~G~d~i~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~~~via 282 (367)
+ ..+.+|+.+ +++|.+..- .+.++ ++.+.+.|++.|-- ...+..++.+.++++.. .+||++
T Consensus 178 ~~~v~avR~a~g~~~~l~vDaN~~~~~~~A~~~~~~L~~~~i~~iEq--------P~~~~d~~~~~~l~~~~--~iPIa~ 247 (393)
T 4dwd_A 178 IAKARAVRELLGPDAVIGFDANNGYSVGGAIRVGRALEDLGYSWFEE--------PVQHYHVGAMGEVAQRL--DITVSA 247 (393)
T ss_dssp HHHHHHHHHHHCTTCCEEEECTTCCCHHHHHHHHHHHHHTTCSEEEC--------CSCTTCHHHHHHHHHHC--SSEEEB
T ss_pred HHHHHHHHHHhCCCCeEEEECCCCCCHHHHHHHHHHHHhhCCCEEEC--------CCCcccHHHHHHHHhhC--CCCEEe
Confidence 1 123777776 578988754 34555 45677888887752 11223577788888776 799999
Q ss_pred ecCCCCHHHHHHHHHcCCCEEEech
Q 017718 283 DGGVRRGTDVFKALALGASGIFIGR 307 (367)
Q Consensus 283 ~GGI~~~~dv~kal~lGAd~V~ig~ 307 (367)
+..+.+..|+.+++..|+|.|++--
T Consensus 248 dE~~~~~~~~~~~i~~~~d~v~~k~ 272 (393)
T 4dwd_A 248 GEQTYTLQALKDLILSGVRMVQPDI 272 (393)
T ss_dssp CTTCCSHHHHHHHHHHTCCEECCCT
T ss_pred cCCcCCHHHHHHHHHcCCCEEEeCc
Confidence 9999999999999998899999853
|
| >2p8b_A Mandelate racemase/muconate lactonizing enzyme family protein; enolase superfamily, prediction of function; HET: NSK; 1.70A {Bacillus cereus atcc 14579} PDB: 2p88_A* 2p8c_A* | Back alignment and structure |
|---|
Probab=92.62 E-value=1.7 Score=41.53 Aligned_cols=120 Identities=15% Similarity=0.198 Sum_probs=80.3
Q ss_pred cCCHHHHHHHHHHHHHcCCcEEEEecCCCCCCchhHHhhhhcCCCCccccccccccccCccccccchhhHHHhhhccCcc
Q 017718 132 YKDRNVVAQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLTLKNFQGLDLGKMDEANDSGLAAYVAGQIDRS 211 (367)
Q Consensus 132 ~~d~~~~~~~l~ra~~~G~~ai~itvd~p~~g~r~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~ 211 (367)
..+++.+.+.++++.+.||+++-++++... + .+
T Consensus 139 ~~~~~~~~~~a~~~~~~Gf~~iKik~g~~~---~--------------------------------------------~~ 171 (369)
T 2p8b_A 139 IADPENMAEEAASMIQKGYQSFKMKVGTNV---K--------------------------------------------ED 171 (369)
T ss_dssp SCCHHHHHHHHHHHHHTTCCEEEEECCSCH---H--------------------------------------------HH
T ss_pred CCChHHHHHHHHHHHHcCcCEEEEEeCCCH---H--------------------------------------------HH
Confidence 357777778888888999999987665210 0 00
Q ss_pred c-cHHHHHhhc--CCCEEEEec--CCHHHHH-H----HHHcCCcEEEEcCCCCCCCCCccchHHHHHHHHHHhcCCCcEE
Q 017718 212 L-SWKWLQTIT--KLPILVKGV--LTAEDAR-I----AVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVF 281 (367)
Q Consensus 212 ~-~~~~l~~~~--~~Pv~vK~v--~~~~~a~-~----~~~~G~d~i~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~~~vi 281 (367)
. -.+.+|+.+ ++|+.+..- .+.+++. . +.+.|++.|- + ...+..++.+.++++.+ ++||+
T Consensus 172 ~e~v~avr~a~g~~~~l~vDan~~~~~~~a~~~~~~~l~~~~i~~iE-------q-P~~~~d~~~~~~l~~~~--~iPI~ 241 (369)
T 2p8b_A 172 VKRIEAVRERVGNDIAIRVDVNQGWKNSANTLTALRSLGHLNIDWIE-------Q-PVIADDIDAMAHIRSKT--DLPLM 241 (369)
T ss_dssp HHHHHHHHHHHCTTSEEEEECTTTTBSHHHHHHHHHTSTTSCCSCEE-------C-CBCTTCHHHHHHHHHTC--CSCEE
T ss_pred HHHHHHHHHHhCCCCeEEEECCCCCCHHHHHHHHHHHHHhCCCcEEE-------C-CCCcccHHHHHHHHHhC--CCCEE
Confidence 0 122566665 577777753 2344444 3 3445666543 1 11234577788887766 79999
Q ss_pred EecCCCCHHHHHHHHHcC-CCEEEechH
Q 017718 282 LDGGVRRGTDVFKALALG-ASGIFIGRP 308 (367)
Q Consensus 282 a~GGI~~~~dv~kal~lG-Ad~V~ig~~ 308 (367)
+++.+.+..++.+++..| +|.|++-..
T Consensus 242 ~dE~~~~~~~~~~~i~~~~~d~v~ik~~ 269 (369)
T 2p8b_A 242 IDEGLKSSREMRQIIKLEAADKVNIKLM 269 (369)
T ss_dssp ESTTCCSHHHHHHHHHHTCCSEEEECHH
T ss_pred eCCCCCCHHHHHHHHHhCCCCEEEeecc
Confidence 999999999999999986 899999653
|
| >3q94_A Fructose-bisphosphate aldolase, class II; structural genomics, center for structural genomics of infec diseases, csgid, alpha-beta barrel; HET: 13P; 2.30A {Bacillus anthracis} SCOP: c.1.10.0 | Back alignment and structure |
|---|
Probab=92.60 E-value=2.8 Score=39.02 Aligned_cols=108 Identities=19% Similarity=0.248 Sum_probs=76.0
Q ss_pred CCHHHHHHHH-HcCCcEEEEcC---CCCCCCCCcc-chHHHHHHHHHHhcCCCcEEEecCCCCH-HHHHHHHHcCCCEEE
Q 017718 231 LTAEDARIAV-QAGAAGIIVSN---HGARQLDYVP-ATIMALEEVVKATQGRIPVFLDGGVRRG-TDVFKALALGASGIF 304 (367)
Q Consensus 231 ~~~~~a~~~~-~~G~d~i~vs~---~gg~~~~~~~-~~~~~l~~i~~~~~~~~~via~GGI~~~-~dv~kal~lGAd~V~ 304 (367)
.++++|+... +.|+|.+-++- ||-+. +.| -.++.|.+|.+.+ .+|+..=||=..+ +++.|++.+|-.-|=
T Consensus 159 T~Peea~~Fv~~TgvD~LAvaiGt~HG~Y~--~~p~Ld~~~L~~I~~~v--~vpLVlHGgSG~~~e~i~~ai~~Gv~KiN 234 (288)
T 3q94_A 159 ADPAECKHLVEATGIDCLAPALGSVHGPYK--GEPNLGFAEMEQVRDFT--GVPLVLHGGTGIPTADIEKAISLGTSKIN 234 (288)
T ss_dssp CCHHHHHHHHHHHCCSEEEECSSCBSSCCS--SSCCCCHHHHHHHHHHH--CSCEEECCCTTCCHHHHHHHHHTTEEEEE
T ss_pred CCHHHHHHHHHHHCCCEEEEEcCcccCCcC--CCCccCHHHHHHHHHhc--CCCEEEeCCCCCCHHHHHHHHHcCCeEEE
Confidence 5688887765 69999999863 56442 222 3788999999988 6999997765444 568899999999999
Q ss_pred echHHHHHhhc-------c-----Ch-HHHHHHHHHHHHHHHHHHHHhCCC
Q 017718 305 IGRPVVYSLAA-------E-----GE-KGVRRVLEMLREEFELAMALSGCR 342 (367)
Q Consensus 305 ig~~~l~~l~~-------~-----G~-~~v~~~i~~l~~el~~~m~~~G~~ 342 (367)
|+|-+.++... + .+ .-+....+.+++.++..|..+|+.
T Consensus 235 i~Tdl~~a~~~~~r~~~~~~~~~~dpr~~~~~~~~a~~~~v~~~~~~~gs~ 285 (288)
T 3q94_A 235 VNTENQIEFTKAVREVLNKDQEVYDPRKFIGPGRDAIKATVIGKIREFGSN 285 (288)
T ss_dssp ECHHHHHHHHHHHHHHHHHCSSCCCTHHHHHHHHHHHHHHHHHHHHHHTCT
T ss_pred EChHHHHHHHHHHHHHHHhCCCcCCHHHHHHHHHHHHHHHHHHHHHHhCCC
Confidence 99977654321 0 11 123334456777778888888864
|
| >2zbt_A Pyridoxal biosynthesis lyase PDXS; pyridoxine biosynthesis, structural genomics, NPPSFA; 1.65A {Thermus thermophilus} PDB: 2iss_A* | Back alignment and structure |
|---|
Probab=92.59 E-value=0.38 Score=44.73 Aligned_cols=78 Identities=24% Similarity=0.293 Sum_probs=57.0
Q ss_pred hcCCCEEEEecCCHHHHHHHHHcCCcEEEEcC--------CCCCCCCCccchHHHHHHHHHHhcCCCcEEEecCCCCHHH
Q 017718 220 ITKLPILVKGVLTAEDARIAVQAGAAGIIVSN--------HGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTD 291 (367)
Q Consensus 220 ~~~~Pv~vK~v~~~~~a~~~~~~G~d~i~vs~--------~gg~~~~~~~~~~~~l~~i~~~~~~~~~via~GGI~~~~d 291 (367)
..+.|+++ .+...+.++.+.++|+++|.+.. .+|.. .....+.+.++++.+ ++|++...++.+.++
T Consensus 19 ~~~~~~i~-~~~~~~~a~~~~~~Ga~~i~~~e~v~~~~~~~~G~~---~~~~~~~i~~i~~~~--~~Pvi~~~~~~~~~~ 92 (297)
T 2zbt_A 19 MFKGGVIM-DVTTPEQAVIAEEAGAVAVMALERVPADIRAQGGVA---RMSDPKIIKEIMAAV--SIPVMAKVRIGHFVE 92 (297)
T ss_dssp GGTTEEEE-EESSHHHHHHHHHHTCSEEEECSSCHHHHHHTTCCC---CCCCHHHHHHHHTTC--SSCEEEEEETTCHHH
T ss_pred HhhCCeee-eechHHHHHHHHHCCCcEEEeccccchHHHhhcCCc---cCCCHHHHHHHHHhc--CCCeEEEeccCCHHH
Confidence 34668776 55668889999999999998721 11111 123456677776654 789999888888888
Q ss_pred HHHHHHcCCCEE
Q 017718 292 VFKALALGASGI 303 (367)
Q Consensus 292 v~kal~lGAd~V 303 (367)
+..++.+|||+|
T Consensus 93 ~~~~~~aGad~v 104 (297)
T 2zbt_A 93 AMILEAIGVDFI 104 (297)
T ss_dssp HHHHHHTTCSEE
T ss_pred HHHHHHCCCCEE
Confidence 989999999999
|
| >2c6q_A GMP reductase 2; TIM barrel, metal-binding, NADP, oxidoreductase, potassium; HET: IMP NDP; 1.70A {Homo sapiens} PDB: 2bzn_A* 2a7r_A* 2ble_A* 2bwg_A* | Back alignment and structure |
|---|
Probab=92.56 E-value=0.33 Score=46.60 Aligned_cols=67 Identities=21% Similarity=0.216 Sum_probs=48.9
Q ss_pred HHHHHHHHc--CCcEEEEcCCCCCCCCCccchHHHHHHHHHHhcCCCcEEEecCCCCHHHHHHHHHcCCCEEEec
Q 017718 234 EDARIAVQA--GAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFIG 306 (367)
Q Consensus 234 ~~a~~~~~~--G~d~i~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~~~via~GGI~~~~dv~kal~lGAd~V~ig 306 (367)
+.+..+.+. |++.+.++...| .....++.+.++++..+ ++||++ |++.+.+|+.++..+|||+|.++
T Consensus 121 ~~~~~l~~~~~g~~~i~i~~~~g----~~~~~~~~i~~lr~~~~-~~~vi~-g~v~t~e~A~~a~~aGaD~I~v~ 189 (351)
T 2c6q_A 121 EQLEQILEAIPQVKYICLDVANG----YSEHFVEFVKDVRKRFP-QHTIMA-GNVVTGEMVEELILSGADIIKVG 189 (351)
T ss_dssp HHHHHHHHHCTTCCEEEEECSCT----TBHHHHHHHHHHHHHCT-TSEEEE-EEECSHHHHHHHHHTTCSEEEEC
T ss_pred HHHHHHHhccCCCCEEEEEecCC----CcHHHHHHHHHHHHhcC-CCeEEE-EeCCCHHHHHHHHHhCCCEEEEC
Confidence 345566666 999988853222 12235677888877653 588885 77899999999999999999775
|
| >3eez_A Putative mandelate racemase/muconate lactonizing enzyme; structural genomics, unknown function, PSI-2, protein structure initiative; 2.80A {Silicibacter pomeroyi} | Back alignment and structure |
|---|
Probab=92.53 E-value=1.7 Score=41.85 Aligned_cols=119 Identities=18% Similarity=0.106 Sum_probs=80.2
Q ss_pred cCCHHHHHHHHHHHHHcCCcEEEEecCCCCCCchhHHhhhhcCCCCccccccccccccCccccccchhhHHHhhhccCcc
Q 017718 132 YKDRNVVAQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLTLKNFQGLDLGKMDEANDSGLAAYVAGQIDRS 211 (367)
Q Consensus 132 ~~d~~~~~~~l~ra~~~G~~ai~itvd~p~~g~r~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~ 211 (367)
..+++.+.+.++++.+.|++++-+.+++.. +.|+.
T Consensus 143 ~~~~e~~~~~a~~~~~~G~~~iKiK~G~~~----~~d~~----------------------------------------- 177 (378)
T 3eez_A 143 AKSVEETRAVIDRYRQRGYVAHSVKIGGDV----ERDIA----------------------------------------- 177 (378)
T ss_dssp SCCHHHHHHHHHHHHHTTCCEEEEECCSCH----HHHHH-----------------------------------------
T ss_pred CCCHHHHHHHHHHHHhCCCCEEEeccCCCH----HHHHH-----------------------------------------
Confidence 467888888888888899999988776411 00000
Q ss_pred ccHHHHHhhc--CCCEEEEec--CCHHHH----HHHHHcCCcEEEEcCCCCCCCCCccchHHHHHHHHHHhcCCCcEEEe
Q 017718 212 LSWKWLQTIT--KLPILVKGV--LTAEDA----RIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLD 283 (367)
Q Consensus 212 ~~~~~l~~~~--~~Pv~vK~v--~~~~~a----~~~~~~G~d~i~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~~~via~ 283 (367)
..+.+|+.+ +++|.++.- -+.++| +.+.+.|+ .|- +. .+.++.+.++++.+ .+||+++
T Consensus 178 -~v~avR~a~g~~~~l~vDan~~~~~~~a~~~~~~l~~~~i-~iE-------qP---~~~~~~~~~l~~~~--~iPIa~d 243 (378)
T 3eez_A 178 -RIRDVEDIREPGEIVLYDVNRGWTRQQALRVMRATEDLHV-MFE-------QP---GETLDDIAAIRPLH--SAPVSVD 243 (378)
T ss_dssp -HHHHHTTSCCTTCEEEEECTTCCCHHHHHHHHHHTGGGTC-CEE-------CC---SSSHHHHHHTGGGC--CCCEEEC
T ss_pred -HHHHHHHHcCCCceEEEECCCCCCHHHHHHHHHHhccCCe-EEe-------cC---CCCHHHHHHHHhhC--CCCEEEC
Confidence 122666665 477887754 345554 34445555 442 11 12566677766655 7999999
Q ss_pred cCCCCHHHHHHHHHcC-CCEEEechHH
Q 017718 284 GGVRRGTDVFKALALG-ASGIFIGRPV 309 (367)
Q Consensus 284 GGI~~~~dv~kal~lG-Ad~V~ig~~~ 309 (367)
+.+.+..|+.+++..| +|.|++-...
T Consensus 244 E~~~~~~~~~~~l~~~~~d~v~ik~~~ 270 (378)
T 3eez_A 244 ECLVTLQDAARVARDGLAEVFGIKLNR 270 (378)
T ss_dssp TTCCSHHHHHHHHHTTCCSEEEEEHHH
T ss_pred CCCCCHHHHHHHHHcCCCCEEEeCchh
Confidence 9999999999999986 8999997644
|
| >2qde_A Mandelate racemase/muconate lactonizing enzyme FA protein; PSI-II, NYSGXRC, enolase, structural genomics, protei structure initiative, PSI-2; 1.93A {Azoarcus SP} | Back alignment and structure |
|---|
Probab=92.51 E-value=1.2 Score=43.04 Aligned_cols=118 Identities=14% Similarity=0.213 Sum_probs=80.7
Q ss_pred CCHHHHHHHHHHHHHcCCcEEEEecCCCCCCchhHHhhhhcCCCCccccccccccccCccccccchhhHHHhhhccCccc
Q 017718 133 KDRNVVAQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLTLKNFQGLDLGKMDEANDSGLAAYVAGQIDRSL 212 (367)
Q Consensus 133 ~d~~~~~~~l~ra~~~G~~ai~itvd~p~~g~r~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~ 212 (367)
.+++.+.+.++++.+.||+++=+.++... + .+.
T Consensus 144 ~~~e~~~~~a~~~~~~Gf~~vKik~g~~~---~--------------------------------------------~~~ 176 (397)
T 2qde_A 144 GEPEAVAEEALAVLREGFHFVKLKAGGPL---K--------------------------------------------ADI 176 (397)
T ss_dssp SCHHHHHHHHHHHHHHTCSCEEEECCSCH---H--------------------------------------------HHH
T ss_pred CCHHHHHHHHHHHHHhhhhheeecccCCH---H--------------------------------------------HHH
Confidence 57787778888888899999877654210 0 000
Q ss_pred -cHHHHHhhc--CCCEEEEec--CCHHH----HHHHHHcCCcEEEEcCCCCCCCCCccchHHHHHHHHHHhcCCCcEEEe
Q 017718 213 -SWKWLQTIT--KLPILVKGV--LTAED----ARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLD 283 (367)
Q Consensus 213 -~~~~l~~~~--~~Pv~vK~v--~~~~~----a~~~~~~G~d~i~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~~~via~ 283 (367)
..+.+|+.+ +++|.+..- .+.++ ++.+.+.|++.|-- ...+..++.+.++++.+ ++||+++
T Consensus 177 e~v~avR~a~g~d~~l~vDan~~~~~~~a~~~~~~l~~~~i~~iEq--------P~~~~~~~~~~~l~~~~--~iPIa~d 246 (397)
T 2qde_A 177 AMVAEVRRAVGDDVDLFIDINGAWTYDQALTTIRALEKYNLSKIEQ--------PLPAWDLDGMARLRGKV--ATPIYAD 246 (397)
T ss_dssp HHHHHHHHHHCTTSCEEEECTTCCCHHHHHHHHHHHGGGCCSCEEC--------CSCTTCHHHHHHHHTTC--SSCEEES
T ss_pred HHHHHHHHhhCCCCEEEEECCCCCCHHHHHHHHHHHHhCCCCEEEC--------CCChhhHHHHHHHHhhC--CCCEEEe
Confidence 123666665 578877743 34555 45566778776631 11223577777777655 7999999
Q ss_pred cCCCCHHHHHHHHHcC-CCEEEech
Q 017718 284 GGVRRGTDVFKALALG-ASGIFIGR 307 (367)
Q Consensus 284 GGI~~~~dv~kal~lG-Ad~V~ig~ 307 (367)
+.+.+..++.+++..| +|.|++--
T Consensus 247 E~~~~~~~~~~~i~~~~~d~v~ik~ 271 (397)
T 2qde_A 247 ESAQELHDLLAIINKGAADGLMIKT 271 (397)
T ss_dssp TTCCSHHHHHHHHHHTCCSEEEECH
T ss_pred CCcCCHHHHHHHHHcCCCCEEEEec
Confidence 9999999999999976 89999853
|
| >2v82_A 2-dehydro-3-deoxy-6-phosphogalactonate aldolase; lyase, kdpgal; HET: KDP; 2.1A {Escherichia coli} PDB: 2v81_A* | Back alignment and structure |
|---|
Probab=92.30 E-value=0.4 Score=42.05 Aligned_cols=65 Identities=15% Similarity=0.139 Sum_probs=49.2
Q ss_pred HHHHHHHHcCCcEEEEcCCCCCCCCCccchHHHHHHHHHHhcCCCc-EEEecCCCCHHHHHHHHHcCCCEEEech
Q 017718 234 EDARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIP-VFLDGGVRRGTDVFKALALGASGIFIGR 307 (367)
Q Consensus 234 ~~a~~~~~~G~d~i~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~~~-via~GGI~~~~dv~kal~lGAd~V~ig~ 307 (367)
+.++.+.+.|++.|.+... .+...+.+.++.+.. .++ ++..|++.+.+++..++.+|||+|.++.
T Consensus 23 ~~~~~~~~~G~~~i~l~~~-------~~~~~~~i~~i~~~~--~~~l~vg~g~~~~~~~i~~a~~~Gad~V~~~~ 88 (212)
T 2v82_A 23 AHVGAVIDAGFDAVEIPLN-------SPQWEQSIPAIVDAY--GDKALIGAGTVLKPEQVDALARMGCQLIVTPN 88 (212)
T ss_dssp HHHHHHHHHTCCEEEEETT-------STTHHHHHHHHHHHH--TTTSEEEEECCCSHHHHHHHHHTTCCEEECSS
T ss_pred HHHHHHHHCCCCEEEEeCC-------ChhHHHHHHHHHHhC--CCCeEEEeccccCHHHHHHHHHcCCCEEEeCC
Confidence 4578888999999988432 134456677776655 344 4567899999999999999999998875
|
| >3i4k_A Muconate lactonizing enzyme; structural genomics, NYSGXRC, target 9450D, isomerase, PSI-2, protein structure initiative; 2.20A {Corynebacterium glutamicum} | Back alignment and structure |
|---|
Probab=92.25 E-value=3.3 Score=39.86 Aligned_cols=82 Identities=15% Similarity=0.140 Sum_probs=61.2
Q ss_pred HHHhhc--CCCEEEEec--CCHHH----HHHHHHcCCcEEEEcCCCCCCCCCccchHHHHHHHHHHhcCCCcEEEecCCC
Q 017718 216 WLQTIT--KLPILVKGV--LTAED----ARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVR 287 (367)
Q Consensus 216 ~l~~~~--~~Pv~vK~v--~~~~~----a~~~~~~G~d~i~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~~~via~GGI~ 287 (367)
.+|+.+ +++|.+..- .+.++ ++.+.+.|++.|-= ...+..++.+.++++.. .+||++++.+.
T Consensus 186 avR~a~g~~~~l~vDan~~~~~~~A~~~~~~l~~~~i~~iEq--------P~~~~d~~~~~~l~~~~--~iPIa~dE~~~ 255 (383)
T 3i4k_A 186 ELAREVGDRVSLRIDINARWDRRTALHYLPILAEAGVELFEQ--------PTPADDLETLREITRRT--NVSVMADESVW 255 (383)
T ss_dssp HHHHTTTTTSEEEEECTTCSCHHHHHHHHHHHHHTTCCEEES--------CSCTTCHHHHHHHHHHH--CCEEEESTTCS
T ss_pred HHHHHcCCCCEEEEECCCCCCHHHHHHHHHHHHhcCCCEEEC--------CCChhhHHHHHHHHhhC--CCCEEecCccC
Confidence 677776 468888754 34444 55677889887741 11223567788888777 79999999999
Q ss_pred CHHHHHHHHHcC-CCEEEech
Q 017718 288 RGTDVFKALALG-ASGIFIGR 307 (367)
Q Consensus 288 ~~~dv~kal~lG-Ad~V~ig~ 307 (367)
+..|+.+++..| +|.|++--
T Consensus 256 ~~~~~~~~i~~~~~d~v~~k~ 276 (383)
T 3i4k_A 256 TPAEALAVVKAQAADVIALKT 276 (383)
T ss_dssp SHHHHHHHHHHTCCSEEEECT
T ss_pred CHHHHHHHHHcCCCCEEEEcc
Confidence 999999999987 89999864
|
| >1ea0_A Glutamate synthase [NADPH] large chain; oxidoreductase, iron sulphur flavoprotein; HET: OMT FMN AKG; 3.0A {Azospirillum brasilense} SCOP: b.80.4.1 c.1.4.1 d.153.1.1 PDB: 2vdc_A* | Back alignment and structure |
|---|
Probab=92.09 E-value=1.4 Score=49.73 Aligned_cols=120 Identities=13% Similarity=0.112 Sum_probs=84.2
Q ss_pred HHHHHHHHcCCcEEEEcCCCCCCCCCccchHHHHHHHHHHh-----cCCCcEEE-ecCCCCHHHHHHHHHcCCCEEEech
Q 017718 234 EDARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKAT-----QGRIPVFL-DGGVRRGTDVFKALALGASGIFIGR 307 (367)
Q Consensus 234 ~~a~~~~~~G~d~i~vs~~gg~~~~~~~~~~~~l~~i~~~~-----~~~~~via-~GGI~~~~dv~kal~lGAd~V~ig~ 307 (367)
++|..+.+.|+..|++|..+-..-....|.+-++..+..++ +.++-+++ +|-+|+.-|++-.+-.||++|.=.-
T Consensus 591 ~~a~~av~~g~~iliLsDr~~~~~~~~ip~lla~~avh~~L~~~~~R~~~~lvvesg~~r~~Hh~a~l~GyGA~av~Pyl 670 (1479)
T 1ea0_A 591 QETEDAVRGGATHVILTDEAMGPARAAIPAILATGAVHTHLIRSNLRTFTSLNVRTAEGLDTHYFAVLIGVGATTVNAYL 670 (1479)
T ss_dssp HHHHHHHHHTCCEEEEECTTCBTTEEECCHHHHHHHHHHHHHTTTCGGGCEEEEECSSCCSHHHHHHHHTTTCSEEECHH
T ss_pred HHHHHHHHCCCcEEEECCCCCCCCccCcCHHHHHHHHHHHHHhcCccccceEEEEeCCchhHHHHHHHHhcCccccCHHH
Confidence 45778889999999999754211111234444444444443 33577777 7789999999988889999996333
Q ss_pred HH--HHHhhccC-------hHHHHHHHHHHHHHHHHHHHHhCCCChhhhccccee
Q 017718 308 PV--VYSLAAEG-------EKGVRRVLEMLREEFELAMALSGCRSLKEITRDHIV 353 (367)
Q Consensus 308 ~~--l~~l~~~G-------~~~v~~~i~~l~~el~~~m~~~G~~si~~l~~~~l~ 353 (367)
++ +..+...| ++.+.++++.+.+.|...|..+|.++++.-++.-+.
T Consensus 671 a~e~~~~~~~~~~~~~~~~~~~~~ny~~a~~~Gl~KimskmGIst~~sY~gaqiF 725 (1479)
T 1ea0_A 671 AQEAIAERHRRGLFGSMPLEKGMANYKKAIDDGLLKIMSKMGISVISSYRGGGNF 725 (1479)
T ss_dssp HHHHHHHHHTTTTTTTCCHHHHHHHHHHHHHHHHHHHHHTTTCCCHHHHTTSCCE
T ss_pred HHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHHHHHHHHhhccHhhhhhcCCceee
Confidence 22 22222223 357889999999999999999999999998877654
|
| >3g8r_A Probable spore coat polysaccharide biosynthesis P; structural genomics, protein structure initiative; 2.49A {Chromobacterium violaceum atcc 12472} | Back alignment and structure |
|---|
Probab=91.91 E-value=3.9 Score=39.15 Aligned_cols=228 Identities=15% Similarity=0.169 Sum_probs=109.6
Q ss_pred ccceEeCcccchhccCChhhHHHHHHHHHcCCc-----ee-ecCCCCCCHHHHHhh----CCCceEEEEee--cCCHHHH
Q 017718 71 SMPIMIAPTAMQKMAHPEGEYATARAASAAGTI-----MT-LSSWSTSSVEEVAST----GPGIRFFQLYV--YKDRNVV 138 (367)
Q Consensus 71 ~~Pi~iAPm~~~~l~~~~~e~~~a~aa~~~G~~-----~~-vs~~~~~~~e~i~~~----~~~~~~~QLy~--~~d~~~~ 138 (367)
..|++||=+|..--..-+.-..+.++|+++|.. .+ +=++ ..+.+... ..+..++++|- .-..+..
T Consensus 4 ~~~~IIAEig~NHnGdle~Ak~lI~~A~~aGad~~~d~avKfQt~---~~d~l~~~~~~~~~~~~~~~~~~~~el~~e~~ 80 (350)
T 3g8r_A 4 SKPLFIFEMANNHMGNVEHGVALIRAIRESCQGFDFDFGFKLQYR---NLDTFIHSSFKGRDDVKYVKRFEETRLQPEQM 80 (350)
T ss_dssp -CCEEEEECTTTTTTCSHHHHHHHHHHHHHTTTCCSEEEEEEEEC---CHHHHBCGGGTTCCSSSSHHHHHHTCCCHHHH
T ss_pred CCCEEEEEECCCccCcHHHHHHHHHHHHHhCCcccCCeeEEcccc---chhhhcChhccCccHHHHHHHHHHhcCCHHHH
Confidence 469999998764322112223677889999875 22 2222 22333211 01112333331 1356777
Q ss_pred HHHHHHHHHcCCcEEEEecCCCCCCchhHHhhhhcCCCCccccccccccccCccccccchhhHHHhhhccCccc-cHHHH
Q 017718 139 AQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLTLKNFQGLDLGKMDEANDSGLAAYVAGQIDRSL-SWKWL 217 (367)
Q Consensus 139 ~~~l~ra~~~G~~ai~itvd~p~~g~r~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~-~~~~l 217 (367)
..+.+.+++.|...+.-=.| .+.-|.-..+..|- +. -...++ ++..|
T Consensus 81 ~~L~~~~~~~Gi~~~st~fD-----~~svd~l~~~~v~~-~K--------------------------I~S~~~~N~pLL 128 (350)
T 3g8r_A 81 QKLVAEMKANGFKAICTPFD-----EESVDLIEAHGIEI-IK--------------------------IASCSFTDWPLL 128 (350)
T ss_dssp HHHHHHHHHTTCEEEEEECS-----HHHHHHHHHTTCCE-EE--------------------------ECSSSTTCHHHH
T ss_pred HHHHHHHHHcCCcEEeccCC-----HHHHHHHHHcCCCE-EE--------------------------ECcccccCHHHH
Confidence 88888999999876642222 12222222221110 00 001222 33433
Q ss_pred Hh--hcCCCEEEEecC-CHHHH----HHHHHcCCcEEEEcCCCCCCCCCccchHHHHHHHHHHhcCCCcEEEe----cCC
Q 017718 218 QT--ITKLPILVKGVL-TAEDA----RIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLD----GGV 286 (367)
Q Consensus 218 ~~--~~~~Pv~vK~v~-~~~~a----~~~~~~G~d~i~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~~~via~----GGI 286 (367)
++ .+++||++|..+ +.++. +.+.+.|-+.+.+...-++.-......+..++.+++..+ .+||-.+ |+.
T Consensus 129 ~~va~~gKPviLstGmstl~Ei~~Ave~i~~~g~~viLlhC~s~YPt~~~~~nL~aI~~Lk~~fp-~lpVG~SdHt~g~~ 207 (350)
T 3g8r_A 129 ERIARSDKPVVASTAGARREDIDKVVSFMLHRGKDLTIMHCVAEYPTPDDHLHLARIKTLRQQYA-GVRIGYSTHEDPDL 207 (350)
T ss_dssp HHHHTSCSCEEEECTTCCHHHHHHHHHHHHTTTCCEEEEECCCCSSCCGGGCCTTHHHHHHHHCT-TSEEEEEECCCSSC
T ss_pred HHHHhhCCcEEEECCCCCHHHHHHHHHHHHHcCCCEEEEecCCCCCCCcccCCHHHHHHHHHHCC-CCCEEcCCCCCCCc
Confidence 32 368999999874 45553 334456777444422211110011123445666666542 4788665 332
Q ss_pred CCHHHHHHHHHcCCCEEEechHHHHHh--hcc-----ChHHHHHHHHHHHHHHHHHHHHhCCC
Q 017718 287 RRGTDVFKALALGASGIFIGRPVVYSL--AAE-----GEKGVRRVLEMLREEFELAMALSGCR 342 (367)
Q Consensus 287 ~~~~dv~kal~lGAd~V~ig~~~l~~l--~~~-----G~~~v~~~i~~l~~el~~~m~~~G~~ 342 (367)
. .-+..|.++||+. |=+-|-..- ... -++ -+..|.++++..-..+|..
T Consensus 208 -~-~~~~AAvAlGA~v--IEkH~tldr~~g~D~~~Sl~P~----ef~~lv~~ir~i~~alG~~ 262 (350)
T 3g8r_A 208 -M-EPIMLAVAQGATV--FEKHVGLPTDQYGINNYSANPE----QVRRWLAAAARALAMLGDG 262 (350)
T ss_dssp -C-HHHHHHHHTTCCE--EEEEBCCCBTTBCCCTTCBCHH----HHHHHHHHHHHHHHHHCCT
T ss_pred -c-HHHHHHHHcCCCE--EEEecCcccCCCCcccccCCHH----HHHHHHHHHHHHHHHcCCC
Confidence 2 2345788999973 333221100 011 133 3455566666666667753
|
| >3stp_A Galactonate dehydratase, putative; PSI biology, structural genomics, NEW YORK structural genomi research consortium; 1.88A {Labrenzia aggregata iam 12614} PDB: 3sqs_A 3ssz_A | Back alignment and structure |
|---|
Probab=91.89 E-value=1.3 Score=43.44 Aligned_cols=127 Identities=7% Similarity=-0.003 Sum_probs=86.8
Q ss_pred CCHHHHHHHHHHHHHcCCcEEEEecCCCCCCchhHHhhhhcCCCCccccccccccccCccccccchhhHHHhhhccCccc
Q 017718 133 KDRNVVAQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLTLKNFQGLDLGKMDEANDSGLAAYVAGQIDRSL 212 (367)
Q Consensus 133 ~d~~~~~~~l~ra~~~G~~ai~itvd~p~~g~r~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~ 212 (367)
.+++.+.+.++++.+.||+++=+.+++... + + ...+ +.++
T Consensus 178 ~~~e~~~~~a~~~~~~Gf~~iKik~g~gp~-----d----------------------------g---~~~~----~~di 217 (412)
T 3stp_A 178 GSIEAMQKEAEEAMKGGYKAFKSRFGYGPK-----D----------------------------G---MPGM----RENL 217 (412)
T ss_dssp CCHHHHHHHHHHHHTTTCSEEEEECCCCGG-----G----------------------------H---HHHH----HHHH
T ss_pred CCHHHHHHHHHHHHHcCCCEEEEecccCcc-----c----------------------------c---cchH----HHHH
Confidence 578888888888889999999887764210 0 0 0000 0111
Q ss_pred -cHHHHHhhc--CCCEEEEec--CCHHH----HHHHHHcCCcEEEEcCCCCCCCCCccchHHHHHHHHHHhcCCCcEEEe
Q 017718 213 -SWKWLQTIT--KLPILVKGV--LTAED----ARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLD 283 (367)
Q Consensus 213 -~~~~l~~~~--~~Pv~vK~v--~~~~~----a~~~~~~G~d~i~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~~~via~ 283 (367)
..+.+|+.+ +++|.+..- .+.++ ++.+.+.|++.|-- ...+..++.+.++++.. .+||+++
T Consensus 218 e~v~avReavG~d~~L~vDaN~~~~~~~Ai~~~~~Le~~~i~~iEe--------P~~~~d~~~~~~l~~~~--~iPIa~d 287 (412)
T 3stp_A 218 KRVEAVREVIGYDNDLMLECYMGWNLDYAKRMLPKLAPYEPRWLEE--------PVIADDVAGYAELNAMN--IVPISGG 287 (412)
T ss_dssp HHHHHHHHHHCSSSEEEEECTTCSCHHHHHHHHHHHGGGCCSEEEC--------CSCTTCHHHHHHHHHTC--SSCEEEC
T ss_pred HHHHHHHHHcCCCCeEEEECCCCCCHHHHHHHHHHHHhcCCCEEEC--------CCCcccHHHHHHHHhCC--CCCEEeC
Confidence 123777776 578888754 35555 45567778887742 11233577788887765 7999999
Q ss_pred cCCCCHHHHHHHHHcC-CCEEEechHH
Q 017718 284 GGVRRGTDVFKALALG-ASGIFIGRPV 309 (367)
Q Consensus 284 GGI~~~~dv~kal~lG-Ad~V~ig~~~ 309 (367)
+.+.+..|+.+++..| +|.|++--..
T Consensus 288 E~~~~~~~~~~li~~~a~D~v~ik~~~ 314 (412)
T 3stp_A 288 EHEFSVIGCAELINRKAVSVLQYDTNR 314 (412)
T ss_dssp TTCCSHHHHHHHHHTTCCSEECCCHHH
T ss_pred CCCCCHHHHHHHHHcCCCCEEecChhh
Confidence 9999999999999987 8999987544
|
| >3rcy_A Mandelate racemase/muconate lactonizing enzyme-LI protein; structural genomics, protein structure initiative; HET: RIB; 1.99A {Roseovarius SP} PDB: 3t4w_A | Back alignment and structure |
|---|
Probab=91.85 E-value=2.6 Score=41.42 Aligned_cols=131 Identities=17% Similarity=0.185 Sum_probs=87.4
Q ss_pred CCHHHHHHHHHHHHHcCCcEEEEecCCCCCCchhHHhhhhcCCCCccccccccccccCccccccchhhHHHhhhccCccc
Q 017718 133 KDRNVVAQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLTLKNFQGLDLGKMDEANDSGLAAYVAGQIDRSL 212 (367)
Q Consensus 133 ~d~~~~~~~l~ra~~~G~~ai~itvd~p~~g~r~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~ 212 (367)
.+++.+.+.++++.+.||+++=+.+++|.... .|. .|. .+ ..+.+.
T Consensus 145 ~~~e~~~~~a~~~~~~Gf~~iKlk~g~~~~~~------~G~-~~~-----------------------~~----~~~~d~ 190 (433)
T 3rcy_A 145 TSADMAAESAADCVARGYTAVKFDPAGPYTLR------GGH-MPA-----------------------MT----DISLSV 190 (433)
T ss_dssp TCHHHHHHHHHHHHHTTCSEEEECCSCCCBTT------CCB-CCC-----------------------HH----HHHHHH
T ss_pred CCHHHHHHHHHHHHHcCCCEEEEcCCCCcccc------cCC-Ccc-----------------------hh----hHHHHH
Confidence 57788888888888899999998887664200 000 000 00 000111
Q ss_pred -cHHHHHhhc--CCCEEEEec--CCHHH----HHHHHHcCCcEEEEcCCCCCCCCCccchHHHHHHHHHHhcCCCcEEEe
Q 017718 213 -SWKWLQTIT--KLPILVKGV--LTAED----ARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLD 283 (367)
Q Consensus 213 -~~~~l~~~~--~~Pv~vK~v--~~~~~----a~~~~~~G~d~i~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~~~via~ 283 (367)
..+.+|+.+ +++|.+..- .+.++ ++.+.+.|++.|-- ...+..++.+.++++.+ .+||+++
T Consensus 191 e~v~avR~avG~d~~L~vDan~~~t~~~A~~~~~~Le~~~i~~iEe--------P~~~~~~~~~~~l~~~~--~iPIa~d 260 (433)
T 3rcy_A 191 EFCRKIRAAVGDKADLLFGTHGQFTTAGAIRLGQAIEPYSPLWYEE--------PVPPDNVGAMAQVARAV--RIPVATG 260 (433)
T ss_dssp HHHHHHHHHHTTSSEEEECCCSCBCHHHHHHHHHHHGGGCCSEEEC--------CSCTTCHHHHHHHHHHS--SSCEEEC
T ss_pred HHHHHHHHHhCCCCeEEEeCCCCCCHHHHHHHHHHhhhcCCCEEEC--------CCChhhHHHHHHHHhcc--CCCEEec
Confidence 123777776 478888653 35555 45566778877742 11223577888888876 7999999
Q ss_pred cCCCCHHHHHHHHHcC-CCEEEech
Q 017718 284 GGVRRGTDVFKALALG-ASGIFIGR 307 (367)
Q Consensus 284 GGI~~~~dv~kal~lG-Ad~V~ig~ 307 (367)
+.+.+..|+.+++..| +|.|++--
T Consensus 261 E~~~~~~~~~~~l~~g~~D~v~~d~ 285 (433)
T 3rcy_A 261 ERLTTKAEFAPVLREGAAAILQPAL 285 (433)
T ss_dssp TTCCSHHHHHHHHHTTCCSEECCCH
T ss_pred CCCCCHHHHHHHHHcCCCCEEEeCc
Confidence 9999999999999987 89998864
|
| >1v5x_A PRA isomerase, phosphoribosylanthranilate isomerase; alpha-beta barrel, TRPF, riken structural genomics/proteomics initiative, RSGI; 2.00A {Thermus thermophilus} SCOP: c.1.2.4 | Back alignment and structure |
|---|
Probab=91.78 E-value=1.6 Score=38.53 Aligned_cols=78 Identities=14% Similarity=0.137 Sum_probs=48.8
Q ss_pred CCCEEEEecC-CHHHHHHHHHcCCcEEEEcCC-CCC--CCCCccchHHHHHHHHHHhcCCCcEEEecCCCCHHHHHHHHH
Q 017718 222 KLPILVKGVL-TAEDARIAVQAGAAGIIVSNH-GAR--QLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALA 297 (367)
Q Consensus 222 ~~Pv~vK~v~-~~~~a~~~~~~G~d~i~vs~~-gg~--~~~~~~~~~~~l~~i~~~~~~~~~via~GGI~~~~dv~kal~ 297 (367)
++|++-.... +.++. .+.+..+|++.+... ||+ .+||. .++++.. .+.|+|..||+ +++.+.+++.
T Consensus 96 ~~~vika~~v~~~~~l-~~~~~~~d~~LlD~~~gGtG~~fdW~-----~l~~~~~---~~~p~~LAGGL-~peNV~~ai~ 165 (203)
T 1v5x_A 96 FYPVIKAFPLEGPARP-EWADYPAQALLLDGKRPGSGEAYPRA-----WAKPLLA---TGRRVILAGGI-APENLEEVLA 165 (203)
T ss_dssp TSCEEEEEECSSSCCG-GGGGSSCSEEEEECSSTTSCCCCCGG-----GGHHHHH---TTSCEEECSSC-CSTTHHHHHH
T ss_pred CCCEEEEEEcCChHhh-hhhhcCCCEEEEcCCCCCCCCccCHH-----HHHhhhc---cCCcEEEECCC-CHHHHHHHHh
Confidence 4676533322 22222 333444899998763 443 34443 3443211 25799999999 6788988887
Q ss_pred cCCCEEEechHH
Q 017718 298 LGASGIFIGRPV 309 (367)
Q Consensus 298 lGAd~V~ig~~~ 309 (367)
+++.+|=+.+.+
T Consensus 166 ~~p~gVDvsSGv 177 (203)
T 1v5x_A 166 LRPYALDLASGV 177 (203)
T ss_dssp HCCSEEEESGGG
T ss_pred cCCCEEEeCCce
Confidence 799999999844
|
| >3jva_A Dipeptide epimerase; enolase superfamily, isomerase; 1.70A {Enterococcus faecalis V583} PDB: 3jw7_A* 3jzu_A* 3k1g_A* 3kum_A* | Back alignment and structure |
|---|
Probab=91.69 E-value=2.7 Score=40.04 Aligned_cols=121 Identities=20% Similarity=0.203 Sum_probs=80.4
Q ss_pred cCCHHHHHHHHHHHHHcCCcEEEEecCCCCCCchhHHhhhhcCCCCccccccccccccCccccccchhhHHHhhhccCcc
Q 017718 132 YKDRNVVAQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLTLKNFQGLDLGKMDEANDSGLAAYVAGQIDRS 211 (367)
Q Consensus 132 ~~d~~~~~~~l~ra~~~G~~ai~itvd~p~~g~r~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~ 211 (367)
..+++.+.+.++++.+.|++++=+.+++.. +.|+.
T Consensus 137 ~~~~~~~~~~a~~~~~~G~~~~K~K~g~~~----~~d~~----------------------------------------- 171 (354)
T 3jva_A 137 IDEPNVMAQKAVEKVKLGFDTLKIKVGTGI----EADIA----------------------------------------- 171 (354)
T ss_dssp SCCHHHHHHHHHHHHHTTCSEEEEECCSCH----HHHHH-----------------------------------------
T ss_pred CCCHHHHHHHHHHHHHhCCCeEEEEeCCCH----HHHHH-----------------------------------------
Confidence 357777777777778899999877665321 00000
Q ss_pred ccHHHHHhhc--CCCEEEEec--CCHHHH----HHHHHcCCcEEEEcCCCCCCCCCccchHHHHHHHHHHhcCCCcEEEe
Q 017718 212 LSWKWLQTIT--KLPILVKGV--LTAEDA----RIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLD 283 (367)
Q Consensus 212 ~~~~~l~~~~--~~Pv~vK~v--~~~~~a----~~~~~~G~d~i~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~~~via~ 283 (367)
..+.+|+.+ ++++.+..- .+.++| +.+.+.|++.|- + ...+..++.+.++++.. .+||+++
T Consensus 172 -~v~avR~a~g~~~~l~vDan~~~~~~~a~~~~~~L~~~~i~~iE-------q-P~~~~d~~~~~~l~~~~--~iPIa~d 240 (354)
T 3jva_A 172 -RVKAIREAVGFDIKLRLDANQAWTPKDAVKAIQALADYQIELVE-------Q-PVKRRDLEGLKYVTSQV--NTTIMAD 240 (354)
T ss_dssp -HHHHHHHHHCTTSEEEEECTTCSCHHHHHHHHHHTTTSCEEEEE-------C-CSCTTCHHHHHHHHHHC--SSEEEES
T ss_pred -HHHHHHHHcCCCCeEEEECCCCCCHHHHHHHHHHHHhcCCCEEE-------C-CCChhhHHHHHHHHHhC--CCCEEEc
Confidence 122666665 467877653 455554 344455555553 1 11223567788887766 7999999
Q ss_pred cCCCCHHHHHHHHHcC-CCEEEechH
Q 017718 284 GGVRRGTDVFKALALG-ASGIFIGRP 308 (367)
Q Consensus 284 GGI~~~~dv~kal~lG-Ad~V~ig~~ 308 (367)
+.+.+..|+.+++..| +|.|++--.
T Consensus 241 E~~~~~~~~~~~l~~~~~d~v~~k~~ 266 (354)
T 3jva_A 241 ESCFDAQDALELVKKGTVDVINIKLM 266 (354)
T ss_dssp TTCCSHHHHHHHHHHTCCSEEEECHH
T ss_pred CCcCCHHHHHHHHHcCCCCEEEECch
Confidence 9999999999999976 799998753
|
| >1gvf_A Tagatose-bisphosphate aldolase AGAY; lyase, zinc.; HET: PGH; 1.45A {Escherichia coli} SCOP: c.1.10.2 | Back alignment and structure |
|---|
Probab=91.66 E-value=3.7 Score=38.13 Aligned_cols=109 Identities=17% Similarity=0.294 Sum_probs=76.5
Q ss_pred CCHHHHHHHH-HcCCcEEEEcC---CCCCCCCCccchHHHHHHHHHHhcCCCcEEEecCCCC-HHHHHHHHHcCCCEEEe
Q 017718 231 LTAEDARIAV-QAGAAGIIVSN---HGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRR-GTDVFKALALGASGIFI 305 (367)
Q Consensus 231 ~~~~~a~~~~-~~G~d~i~vs~---~gg~~~~~~~~~~~~l~~i~~~~~~~~~via~GGI~~-~~dv~kal~lGAd~V~i 305 (367)
.++++|+... +.|+|.+-++- ||-+. ..-.-.++.|.+|.+.+ .+|+..=||=.. -+++.|++.+|..-|=|
T Consensus 155 T~Peea~~Fv~~TgvD~LAvaiGt~HG~Y~-~~p~Ld~~~L~~I~~~~--~vpLVlHGgSG~~~e~i~~ai~~Gv~KiNi 231 (286)
T 1gvf_A 155 TDPQEAKRFVELTGVDSLAVAIGTAHGLYS-KTPKIDFQRLAEIREVV--DVPLVLHGASDVPDEFVRRTIELGVTKVNV 231 (286)
T ss_dssp CCHHHHHHHHHHHCCSEEEECSSCCSSCCS-SCCCCCHHHHHHHHHHC--CSCEEECCCTTCCHHHHHHHHHTTEEEEEE
T ss_pred CCHHHHHHHHHHHCCCEEEeecCccccCcC-CCCccCHHHHHHHHHhc--CCCEEEECCCCCCHHHHHHHHHCCCeEEEE
Confidence 6788887765 79999999864 55443 11123678999999887 799999775543 45688999999999999
Q ss_pred chHHHHHhhc-------cC-----hH-HHHHHHHHHHHHHHHHHHHhCCC
Q 017718 306 GRPVVYSLAA-------EG-----EK-GVRRVLEMLREEFELAMALSGCR 342 (367)
Q Consensus 306 g~~~l~~l~~-------~G-----~~-~v~~~i~~l~~el~~~m~~~G~~ 342 (367)
+|-+-++... .. +. -+....+.+++.++..|..+|+.
T Consensus 232 ~Tdl~~a~~~~~r~~~~~~~~~~dpr~~~~~~~~a~~~~v~~~~~~~gs~ 281 (286)
T 1gvf_A 232 ATELKIAFAGAVKAWFAENPQGNDPRYYMRVGMDAMKEVVRNKINVCGSA 281 (286)
T ss_dssp CHHHHHHHHHHHHHHHHHCTTCCCHHHHHHHHHHHHHHHHHHHHHHHTCT
T ss_pred ChHHHHHHHHHHHHHHHhCcccCChHHHHHHHHHHHHHHHHHHHHHhCCC
Confidence 9977554321 11 11 13334467788888888888864
|
| >3s5o_A 4-hydroxy-2-oxoglutarate aldolase, mitochondrial; beta barrel, schiff base, hydroxyproline metabolis; HET: KPI; 1.97A {Homo sapiens} SCOP: c.1.10.0 PDB: 3s5n_A | Back alignment and structure |
|---|
Probab=91.64 E-value=8.6 Score=35.82 Aligned_cols=183 Identities=13% Similarity=0.132 Sum_probs=100.3
Q ss_pred ceEeCcccchhccCChhhHHHHHHHHHcCCceee--c---CCCCCCHHHHH-------hhCC--CceEEEEeecCCHHHH
Q 017718 73 PIMIAPTAMQKMAHPEGEYATARAASAAGTIMTL--S---SWSTSSVEEVA-------STGP--GIRFFQLYVYKDRNVV 138 (367)
Q Consensus 73 Pi~iAPm~~~~l~~~~~e~~~a~aa~~~G~~~~v--s---~~~~~~~e~i~-------~~~~--~~~~~QLy~~~d~~~~ 138 (367)
|-++.|+.-.+-.+.+.-..+.+-..+.|+...+ + +..+.+.+|-. +... -+.+...- ..+-+..
T Consensus 20 ~alvTPf~~dg~iD~~~l~~lv~~li~~Gv~Gl~v~GtTGE~~~Ls~~Er~~v~~~~~~~~~gr~pviaGvg-~~~t~~a 98 (307)
T 3s5o_A 20 PPVTTPFTATAEVDYGKLEENLHKLGTFPFRGFVVQGSNGEFPFLTSSERLEVVSRVRQAMPKNRLLLAGSG-CESTQAT 98 (307)
T ss_dssp CBCCCCBCTTSCBCHHHHHHHHHHHTTSCCSEEEESSGGGTGGGSCHHHHHHHHHHHHHTSCTTSEEEEECC-CSSHHHH
T ss_pred EeeEccCCCCCCcCHHHHHHHHHHHHHcCCCEEEECccccchhhCCHHHHHHHHHHHHHHcCCCCcEEEecC-CCCHHHH
Confidence 4456676433222322233455556667875432 3 33556666522 2222 34555543 3466667
Q ss_pred HHHHHHHHHcCCcEEEEecCCCCCCchhHHhhhhcCCCCccccccccccccCccccccchhhHHHhhhccCccccHHHHH
Q 017718 139 AQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLTLKNFQGLDLGKMDEANDSGLAAYVAGQIDRSLSWKWLQ 218 (367)
Q Consensus 139 ~~~l~ra~~~G~~ai~itvd~p~~g~r~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~l~ 218 (367)
.++.+.|+++|++++.+. .|.. ++ | +.+ ..++.+ .++.+.
T Consensus 99 i~la~~A~~~Gadavlv~--~P~y-~~----------~-~~s----------------~~~l~~----------~f~~ia 138 (307)
T 3s5o_A 99 VEMTVSMAQVGADAAMVV--TPCY-YR----------G-RMS----------------SAALIH----------HYTKVA 138 (307)
T ss_dssp HHHHHHHHHTTCSEEEEE--CCCT-TG----------G-GCC----------------HHHHHH----------HHHHHH
T ss_pred HHHHHHHHHcCCCEEEEc--CCCc-CC----------C-CCC----------------HHHHHH----------HHHHHH
Confidence 788999999999999873 2331 00 0 000 001111 224676
Q ss_pred hhcCCCEEEEec-------CCHHHHHHHHHcCCcEEEEcCCCCCCCCCccchHHHHHHHHHHhc-CCCcEEEecCCCCHH
Q 017718 219 TITKLPILVKGV-------LTAEDARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQ-GRIPVFLDGGVRRGT 290 (367)
Q Consensus 219 ~~~~~Pv~vK~v-------~~~~~a~~~~~~G~d~i~vs~~gg~~~~~~~~~~~~l~~i~~~~~-~~~~via~GGI~~~~ 290 (367)
+.+++||++=.+ .+++...++.+.. ..+-+= +. ...+..+.++.+... .++.|+ +|. ..
T Consensus 139 ~a~~lPiilYn~P~~tg~~l~~~~~~~La~~p-nIvgiK-------ds-sgd~~~~~~~~~~~~~~~f~v~-~G~---d~ 205 (307)
T 3s5o_A 139 DLSPIPVVLYSVPANTGLDLPVDAVVTLSQHP-NIVGMX-------DS-GGDVTRIGLIVHKTRKQDFQVL-AGS---AG 205 (307)
T ss_dssp HHCSSCEEEEECHHHHSCCCCHHHHHHHHTST-TEEEEE-------EC-SCCHHHHHHHHHHTTTSSCEEE-ESS---GG
T ss_pred hhcCCCEEEEeCCcccCCCCCHHHHHHHhcCC-CEEEEE-------cC-CCCHHHHHHHHHhccCCCeEEE-eCc---HH
Confidence 778999998875 5678777776542 222221 11 113445555555442 356654 452 34
Q ss_pred HHHHHHHcCCCEEEechHH
Q 017718 291 DVFKALALGASGIFIGRPV 309 (367)
Q Consensus 291 dv~kal~lGAd~V~ig~~~ 309 (367)
.++.++++|++++.-+..-
T Consensus 206 ~~l~~l~~G~~G~is~~an 224 (307)
T 3s5o_A 206 FLMASYALGAVGGVCALAN 224 (307)
T ss_dssp GHHHHHHHTCCEEECGGGG
T ss_pred HHHHHHHcCCCEEEechhh
Confidence 5778999999999988743
|
| >4e5t_A Mandelate racemase / muconate lactonizing enzyme, terminal domain protein; aldolase, structural genomics, biology; 2.90A {Labrenzia alexandrii} | Back alignment and structure |
|---|
Probab=91.58 E-value=1.8 Score=42.08 Aligned_cols=131 Identities=20% Similarity=0.167 Sum_probs=85.5
Q ss_pred CCHHHHHHHHHHHHHcCCcEEEEecCCCCCCchhHHhhhhcCCCCccccccccccccCccccccchhhHHHhhhccCccc
Q 017718 133 KDRNVVAQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLTLKNFQGLDLGKMDEANDSGLAAYVAGQIDRSL 212 (367)
Q Consensus 133 ~d~~~~~~~l~ra~~~G~~ai~itvd~p~~g~r~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~ 212 (367)
.+++.+.+.++++.+.||+++=+.++++..+.. +. .+. .+. .+.+.
T Consensus 150 ~~~e~~~~~a~~~~~~G~~~~KlK~g~~~~~~~------g~-~~~-----------------------~~~----~~~d~ 195 (404)
T 4e5t_A 150 NDADMAAEAAAKAVDQGFTAVKFDPAGAYTIYD------GH-QPS-----------------------LED----LERSE 195 (404)
T ss_dssp TCHHHHHHHHHHHHHHTCSEEEECCSCCCBTTC------SB-CCC-----------------------HHH----HHHHH
T ss_pred CCHHHHHHHHHHHHHcCCCEEeeCCCCCCcccc------cc-ccc-----------------------HHH----HHHHH
Confidence 367777777778888999999887765432100 00 000 000 01111
Q ss_pred -cHHHHHhhc--CCCEEEEec--CCHHH----HHHHHHcCCcEEEEcCCCCCCCCCccchHHHHHHHHHHhcCCCcEEEe
Q 017718 213 -SWKWLQTIT--KLPILVKGV--LTAED----ARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLD 283 (367)
Q Consensus 213 -~~~~l~~~~--~~Pv~vK~v--~~~~~----a~~~~~~G~d~i~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~~~via~ 283 (367)
..+.+|+.+ +.+|.+..- .+.++ ++.+.+.|++.|-- ...+..++.+.++++.+ .+||+++
T Consensus 196 ~~v~avR~a~G~d~~l~vDan~~~~~~~A~~~~~~l~~~~i~~iEe--------P~~~~~~~~~~~l~~~~--~iPIa~d 265 (404)
T 4e5t_A 196 AFCKQIRAAVGTKADLLFGTHGQFTVSGAKRLARRLEAYDPLWFEE--------PIPPEKPEDMAEVARYT--SIPVATG 265 (404)
T ss_dssp HHHHHHHHHHGGGSEEEECCCSCBCHHHHHHHHHHHGGGCCSEEEC--------CSCTTCHHHHHHHHHHC--SSCEEEC
T ss_pred HHHHHHHHHcCCCCeEEEeCCCCcCHHHHHHHHHHHhhcCCcEEEC--------CCCcccHHHHHHHHhhC--CCCEEeC
Confidence 123777776 578888754 35555 45566778887752 11223577788888876 8999999
Q ss_pred cCCCCHHHHHHHHHcC-CCEEEech
Q 017718 284 GGVRRGTDVFKALALG-ASGIFIGR 307 (367)
Q Consensus 284 GGI~~~~dv~kal~lG-Ad~V~ig~ 307 (367)
+.+.+..|+.+++..| +|.|++--
T Consensus 266 E~~~~~~~~~~~i~~~a~d~v~~d~ 290 (404)
T 4e5t_A 266 ERLCTKYEFSRVLETGAASILQMNL 290 (404)
T ss_dssp TTCCHHHHHHHHHHHTCCSEECCCT
T ss_pred CCcCCHHHHHHHHHhCCCCEEecCc
Confidence 9999999999999987 79888754
|
| >1tzz_A Hypothetical protein L1841; structural genomics, mandelate racemase like fold, nysgxrc target T1523, PSI, protein structure initiative; 1.86A {Bradyrhizobium japonicum} SCOP: c.1.11.2 d.54.1.1 PDB: 2dw7_A* 2dw6_A* | Back alignment and structure |
|---|
Probab=91.56 E-value=1.4 Score=42.64 Aligned_cols=117 Identities=9% Similarity=0.015 Sum_probs=79.0
Q ss_pred CHHHHHHHHHHHHHcCCcEEEEecCCCCCCchhHHhhhhcCCCCccccccccccccCccccccchhhHHHhhhccCccc-
Q 017718 134 DRNVVAQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLTLKNFQGLDLGKMDEANDSGLAAYVAGQIDRSL- 212 (367)
Q Consensus 134 d~~~~~~~l~ra~~~G~~ai~itvd~p~~g~r~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~- 212 (367)
+++.+.+.++++.+.||+++=+.++.+.. + .+.
T Consensus 165 ~~~~~~~~a~~~~~~Gf~~iKik~g~~~~--~--------------------------------------------~~~e 198 (392)
T 1tzz_A 165 GLSMLRGEMRGYLDRGYNVVKMKIGGAPI--E--------------------------------------------EDRM 198 (392)
T ss_dssp CHHHHHHHHHHHHTTTCSEEEEECSSSCH--H--------------------------------------------HHHH
T ss_pred CHHHHHHHHHHHHHcCCCEEEEcCCCCCH--H--------------------------------------------HHHH
Confidence 67777777888888999999887653110 0 000
Q ss_pred cHHHHHhhc--CCCEEEEec--CCHHH----HHHHHHcCCcEEEEcCCCCCCCCCccchHHHHHHHHHHhcCCCcEEEec
Q 017718 213 SWKWLQTIT--KLPILVKGV--LTAED----ARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDG 284 (367)
Q Consensus 213 ~~~~l~~~~--~~Pv~vK~v--~~~~~----a~~~~~~G~d~i~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~~~via~G 284 (367)
..+.+|+.+ +++|.+..- .+.++ ++.+.+.|++.|-= ...+..++.+.++++.+ ++||++++
T Consensus 199 ~v~avr~a~g~~~~l~vDan~~~~~~~a~~~~~~l~~~~i~~iEq--------P~~~~d~~~~~~l~~~~--~iPIa~dE 268 (392)
T 1tzz_A 199 RIEAVLEEIGKDAQLAVDANGRFNLETGIAYAKMLRDYPLFWYEE--------VGDPLDYALQAALAEFY--PGPMATGE 268 (392)
T ss_dssp HHHHHHHHHTTTCEEEEECTTCCCHHHHHHHHHHHTTSCCSEEEC--------CSCTTCHHHHHHHTTTC--CSCEEECT
T ss_pred HHHHHHHhcCCCCeEEEECCCCCCHHHHHHHHHHHHHcCCCeecC--------CCChhhHHHHHHHHhhC--CCCEEECC
Confidence 122566655 477777643 34555 44556677776531 01134567777776655 79999999
Q ss_pred CCCCHHHHHHHHHcC-----CCEEEec
Q 017718 285 GVRRGTDVFKALALG-----ASGIFIG 306 (367)
Q Consensus 285 GI~~~~dv~kal~lG-----Ad~V~ig 306 (367)
.+.+..|+.+++..| +|.|++-
T Consensus 269 ~~~~~~~~~~~i~~~~~~~~~d~v~ik 295 (392)
T 1tzz_A 269 NLFSHQDARNLLRYGGMRPDRDWLQFD 295 (392)
T ss_dssp TCCSHHHHHHHHHHSCCCTTTCEECCC
T ss_pred CCCCHHHHHHHHHcCCCccCCcEEEEC
Confidence 999999999999988 8999885
|
| >2gdq_A YITF; mandelate racemase/muconate lactonizing enzyme, TIM-barrel, octamer, structural genomics, PSI; 1.80A {Bacillus subtilis subsp} SCOP: c.1.11.2 d.54.1.1 PDB: 2gge_A | Back alignment and structure |
|---|
Probab=91.43 E-value=1.2 Score=42.98 Aligned_cols=118 Identities=11% Similarity=0.071 Sum_probs=78.5
Q ss_pred CCH---HHHHHHHHHHHHcCCcEEEEecCCCCCCchhHHhhhhcCCCCccccccccccccCccccccchhhHHHhhhccC
Q 017718 133 KDR---NVVAQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLTLKNFQGLDLGKMDEANDSGLAAYVAGQID 209 (367)
Q Consensus 133 ~d~---~~~~~~l~ra~~~G~~ai~itvd~p~~g~r~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d 209 (367)
.++ +.+.+.++++.+.||+++=+.++.+-. +
T Consensus 135 ~~~~~~e~~~~~a~~~~~~Gf~~vKik~g~~~~--~-------------------------------------------- 168 (382)
T 2gdq_A 135 DSPQWISRSVSNVEAQLKKGFEQIKVKIGGTSF--K-------------------------------------------- 168 (382)
T ss_dssp SSTTHHHHHHHHHHHHHTTTCCEEEEECSSSCH--H--------------------------------------------
T ss_pred CCcccHHHHHHHHHHHHHcCCCEEEEcCCCCCH--H--------------------------------------------
Confidence 456 777777888888999998876653100 0
Q ss_pred ccc-cHHHHHhhc--CCCEEEEec--CCHHHH----HHHHHc-CCcEEEEcCCCCCCCCCccchHHHHHHHHHHhcCCCc
Q 017718 210 RSL-SWKWLQTIT--KLPILVKGV--LTAEDA----RIAVQA-GAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIP 279 (367)
Q Consensus 210 ~~~-~~~~l~~~~--~~Pv~vK~v--~~~~~a----~~~~~~-G~d~i~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~~~ 279 (367)
.+. ..+.+|+.+ ++++.+..- .+.+++ +.+.+. |++.|-- ...+..++.+.++++.+ ++|
T Consensus 169 ~d~e~v~avR~a~G~d~~l~vDan~~~~~~~a~~~~~~l~~~~~i~~iEq--------P~~~~d~~~~~~l~~~~--~iP 238 (382)
T 2gdq_A 169 EDVRHINALQHTAGSSITMILDANQSYDAAAAFKWERYFSEWTNIGWLEE--------PLPFDQPQDYAMLRSRL--SVP 238 (382)
T ss_dssp HHHHHHHHHHHHHCTTSEEEEECTTCCCHHHHHTTHHHHTTCSCEEEEEC--------CSCSSCHHHHHHHHTTC--SSC
T ss_pred HHHHHHHHHHHhhCCCCEEEEECCCCCCHHHHHHHHHHHhhccCCeEEEC--------CCCcccHHHHHHHHhhC--CCC
Confidence 000 122666665 477887653 355554 455566 6665531 11233577777777655 799
Q ss_pred EEEecCCCCHHHHHHHHHcC-CCEEEec
Q 017718 280 VFLDGGVRRGTDVFKALALG-ASGIFIG 306 (367)
Q Consensus 280 via~GGI~~~~dv~kal~lG-Ad~V~ig 306 (367)
|++++.+.+..++.+++..| +|.|++-
T Consensus 239 Ia~dE~~~~~~~~~~~i~~~~~d~v~ik 266 (382)
T 2gdq_A 239 VAGGENMKGPAQYVPLLSQRCLDIIQPD 266 (382)
T ss_dssp EEECTTCCSHHHHHHHHHTTCCSEECCC
T ss_pred EEecCCcCCHHHHHHHHHcCCCCEEecC
Confidence 99999999999999999987 8999883
|
| >3vnd_A TSA, tryptophan synthase alpha chain; psychrophilic enzyme, cold adaptation; HET: PE8; 2.60A {Shewanella frigidimarina} | Back alignment and structure |
|---|
Probab=91.40 E-value=0.82 Score=42.16 Aligned_cols=36 Identities=33% Similarity=0.396 Sum_probs=31.1
Q ss_pred HHHHhhcCCCEEEEecC-CHHHHHHHHHcCCcEEEEc
Q 017718 215 KWLQTITKLPILVKGVL-TAEDARIAVQAGAAGIIVS 250 (367)
Q Consensus 215 ~~l~~~~~~Pv~vK~v~-~~~~a~~~~~~G~d~i~vs 250 (367)
+.+|+.+++||++-... ++++++.+.++|+|+++|.
T Consensus 199 ~~vr~~~~~pv~vGfGI~~~e~~~~~~~~gADgvVVG 235 (267)
T 3vnd_A 199 TQLAEFNAPPPLLGFGIAEPEQVRAAIKAGAAGAISG 235 (267)
T ss_dssp HHHHTTTCCCEEECSSCCSHHHHHHHHHTTCSEEEEC
T ss_pred HHHHHhcCCCEEEECCcCCHHHHHHHHHcCCCEEEEC
Confidence 47888889999998764 6999998999999999993
|
| >1rvg_A Fructose-1,6-bisphosphate aldolase; class II aldolase, metal-depdendent aldolase, lyase; 2.00A {Thermus aquaticus} SCOP: c.1.10.2 PDB: 1rv8_A 2fjk_A* | Back alignment and structure |
|---|
Probab=91.36 E-value=5.3 Score=37.46 Aligned_cols=110 Identities=26% Similarity=0.331 Sum_probs=76.9
Q ss_pred CCHHHHHHHH-HcCCcEEEEcC---CCCCCCCCcc-chHHHHHHHHHHhcCCCcEEEecCC-------------------
Q 017718 231 LTAEDARIAV-QAGAAGIIVSN---HGARQLDYVP-ATIMALEEVVKATQGRIPVFLDGGV------------------- 286 (367)
Q Consensus 231 ~~~~~a~~~~-~~G~d~i~vs~---~gg~~~~~~~-~~~~~l~~i~~~~~~~~~via~GGI------------------- 286 (367)
.++++|+... +.|+|.+-++- ||-+..++.| -.++.|.+|.+.+ .+|+..=||=
T Consensus 153 T~Peea~~Fv~~TgvD~LAvaiGt~HG~Yk~~g~p~L~~~~L~~I~~~~--~vpLVlHGgSsv~~~~~~~~~~~gg~~~~ 230 (305)
T 1rvg_A 153 TNPEEARIFMERTGADYLAVAIGTSHGAYKGKGRPFIDHARLERIARLV--PAPLVLHGASAVPPELVERFRASGGEIGE 230 (305)
T ss_dssp CCHHHHHHHHHHHCCSEEEECSSCCSSSBCSSSSCCCCHHHHHHHHHHC--CSCEEECSCCCCCHHHHHHHHHTTCCCCS
T ss_pred CCHHHHHHHHHHHCCCEEEEecCccccccCCCCCCccCHHHHHHHHHhc--CCCEEEeCCCCCcHHHHHHHHhhcccccc
Confidence 5788887765 59999999863 6654432222 3678999999888 6999997764
Q ss_pred --C-CHHHHHHHHHcCCCEEEechHHHHHhhc-------cC-----h-HHHHHHHHHHHHHHHHHHHHhCCC
Q 017718 287 --R-RGTDVFKALALGASGIFIGRPVVYSLAA-------EG-----E-KGVRRVLEMLREEFELAMALSGCR 342 (367)
Q Consensus 287 --~-~~~dv~kal~lGAd~V~ig~~~l~~l~~-------~G-----~-~~v~~~i~~l~~el~~~m~~~G~~ 342 (367)
. .-+++.|++.+|..-|=|+|-+-++... +. + .-+....+.+++.++..|..+|+.
T Consensus 231 ~~G~p~e~i~~ai~~GV~KiNi~Tdl~~A~~~~vr~~~~~~~~~~dpr~~l~~~~~a~~~~v~~~~~~~gs~ 302 (305)
T 1rvg_A 231 AAGIHPEDIKKAISLGIAKINTDTDLRLAFTALIREALNKNPKEFDPRKYLGPAREAVKEVVKSRMELFGSV 302 (305)
T ss_dssp CBCCCHHHHHHHHHTTEEEEEECHHHHHHHHHHHHHHHHHCTTCCCTHHHHHHHHHHHHHHHHHHHHHHTCT
T ss_pred CCCCCHHHHHHHHHCCCeEEEEChHHHHHHHHHHHHHHHhCccccChHHHHHHHHHHHHHHHHHHHHHhCCC
Confidence 2 4567889999999999999977554321 11 1 123334466777788888888864
|
| >1wv2_A Thiazole moeity, thiazole biosynthesis protein THIG; structural genomics, protein structure initiative, PSI; 2.90A {Pseudomonas aeruginosa} SCOP: c.1.31.1 | Back alignment and structure |
|---|
Probab=91.19 E-value=0.79 Score=42.05 Aligned_cols=104 Identities=25% Similarity=0.329 Sum_probs=74.9
Q ss_pred CceEEEEeec-------CCHHHHHHHHHHHHHcCCcEEEEecCCCCCCchhHHhhhhcCCCCccccccccccccCccccc
Q 017718 123 GIRFFQLYVY-------KDRNVVAQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLTLKNFQGLDLGKMDEA 195 (367)
Q Consensus 123 ~~~~~QLy~~-------~d~~~~~~~l~ra~~~G~~ai~itvd~p~~g~r~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~ 195 (367)
+..|+||++- .|+..+.+..++.++.|++.+.++.|.|+.++|..++...+-+|.+- +
T Consensus 102 ~~~~iKlEv~~d~~~llpD~~~tv~aa~~L~~~Gf~Vlpy~~dd~~~akrl~~~G~~aVmPlg~------------p--- 166 (265)
T 1wv2_A 102 GHNLVKLEVLADQKTLFPNVVETLKAAEQLVKDGFDVMVYTSDDPIIARQLAEIGCIAVMPLAG------------L--- 166 (265)
T ss_dssp SCCEEEECCBSCTTTCCBCHHHHHHHHHHHHTTTCEEEEEECSCHHHHHHHHHSCCSEEEECSS------------S---
T ss_pred CCCeEEEEeecCccccCcCHHHHHHHHHHHHHCCCEEEEEeCCCHHHHHHHHHhCCCEEEeCCc------------c---
Confidence 5679999875 66777777777778889999988999999988887775433222110 0
Q ss_pred cchhhHHHhhhccCccccH---HHHHhhcCCCEEEEe-cCCHHHHHHHHHcCCcEEEEc
Q 017718 196 NDSGLAAYVAGQIDRSLSW---KWLQTITKLPILVKG-VLTAEDARIAVQAGAAGIIVS 250 (367)
Q Consensus 196 ~~~~~~~~~~~~~d~~~~~---~~l~~~~~~Pv~vK~-v~~~~~a~~~~~~G~d~i~vs 250 (367)
.+++ ..-.+| +.+++..++||++.+ +.+++++..+.+.|+|++.|.
T Consensus 167 IGsG---------~Gi~~~~lI~~I~e~~~vPVI~eGGI~TPsDAa~AmeLGAdgVlVg 216 (265)
T 1wv2_A 167 IGSG---------LGICNPYNLRIILEEAKVPVLVDAGVGTASDAAIAMELGCEAVLMN 216 (265)
T ss_dssp TTCC---------CCCSCHHHHHHHHHHCSSCBEEESCCCSHHHHHHHHHHTCSEEEES
T ss_pred CCCC---------CCcCCHHHHHHHHhcCCCCEEEeCCCCCHHHHHHHHHcCCCEEEEC
Confidence 0000 011134 377777799999984 589999999999999999983
|
| >3sjn_A Mandelate racemase/muconate lactonizing protein; enolase, magnesium binding site, lyase; 1.90A {Shewanella pealeana} | Back alignment and structure |
|---|
Probab=91.06 E-value=1 Score=43.41 Aligned_cols=120 Identities=8% Similarity=0.031 Sum_probs=81.1
Q ss_pred CHHHHHHHHHHHHHcCCcEEEEecCCCCCCchhHHhhhhcCCCCccccccccccccCccccccchhhHHHhhhccCccc-
Q 017718 134 DRNVVAQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLTLKNFQGLDLGKMDEANDSGLAAYVAGQIDRSL- 212 (367)
Q Consensus 134 d~~~~~~~l~ra~~~G~~ai~itvd~p~~g~r~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~- 212 (367)
+++.+.+.++++.+.|++++=+.++++-. .- +.+.
T Consensus 146 ~~e~~~~~a~~~~~~Gf~~iKlk~g~~g~-~~-------------------------------------------~~d~~ 181 (374)
T 3sjn_A 146 KPEDNVAIVQGLKDQGFSSIKFGGGVMGD-DP-------------------------------------------DTDYA 181 (374)
T ss_dssp SGGGGHHHHHHHHTTTCSEEEEECTTTTS-CH-------------------------------------------HHHHH
T ss_pred CHHHHHHHHHHHHHcCCCEEEeccCCCCC-CH-------------------------------------------HHHHH
Confidence 33777777888888999999887764310 00 0011
Q ss_pred cHHHHHhhc--CCCEEEEec--CC-HHHH----HHHHHcCCcEEEEcCCCCCCCCCccchHHHHHHHHHHhcCCCcEEEe
Q 017718 213 SWKWLQTIT--KLPILVKGV--LT-AEDA----RIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLD 283 (367)
Q Consensus 213 ~~~~l~~~~--~~Pv~vK~v--~~-~~~a----~~~~~~G~d~i~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~~~via~ 283 (367)
..+.+|+.+ +++|.+..- .+ .++| +.+.+.|++.|-- ...+..++.+.++++.. .+||+++
T Consensus 182 ~v~avR~a~g~~~~l~vDan~~~~d~~~A~~~~~~l~~~~i~~iEq--------P~~~~~~~~~~~l~~~~--~iPIa~d 251 (374)
T 3sjn_A 182 IVKAVREAAGPEMEVQIDLASKWHTCGHSAMMAKRLEEFNLNWIEE--------PVLADSLISYEKLSRQV--SQKIAGG 251 (374)
T ss_dssp HHHHHHHHHCSSSEEEEECTTTTCSHHHHHHHHHHSGGGCCSEEEC--------SSCTTCHHHHHHHHHHC--SSEEEEC
T ss_pred HHHHHHHHhCCCCeEEEECCCCCCCHHHHHHHHHHhhhcCceEEEC--------CCCcccHHHHHHHHhhC--CCCEEeC
Confidence 123677765 578888754 45 6664 4455667776641 11123577788888776 7999999
Q ss_pred cCCCCHHHHHHHHHcC-CCEEEech
Q 017718 284 GGVRRGTDVFKALALG-ASGIFIGR 307 (367)
Q Consensus 284 GGI~~~~dv~kal~lG-Ad~V~ig~ 307 (367)
+.+.+..|+.+++..| +|.|++--
T Consensus 252 E~~~~~~~~~~~l~~~~~d~v~~k~ 276 (374)
T 3sjn_A 252 ESLTTRYEFQEFITKSNADIVQPDI 276 (374)
T ss_dssp TTCCHHHHHHHHHHHHCCSEECCBT
T ss_pred CCcCCHHHHHHHHHcCCCCEEEeCc
Confidence 9999999999999875 89998753
|
| >1jub_A Dihydroorotate dehydrogenase A; homodimer, alpha-beta barrel, flavoprotein, mutant enzyme, oxidoreductase; HET: FMN; 1.40A {Lactococcus lactis} SCOP: c.1.4.1 PDB: 1ovd_A* 1jue_A* 1dor_A* 2bsl_A* 2bx7_A* 2dor_A* 1jqv_A* 1jrb_A* 1jrc_A* 1jqx_A* | Back alignment and structure |
|---|
Probab=91.04 E-value=0.86 Score=42.51 Aligned_cols=154 Identities=15% Similarity=0.035 Sum_probs=82.0
Q ss_pred ccceEeCcccchhccCChhhHHHHHHHHHcCCc-eeecCCCC----------CCHH---HHH----hhCCCceEEEEeec
Q 017718 71 SMPIMIAPTAMQKMAHPEGEYATARAASAAGTI-MTLSSWST----------SSVE---EVA----STGPGIRFFQLYVY 132 (367)
Q Consensus 71 ~~Pi~iAPm~~~~l~~~~~e~~~a~aa~~~G~~-~~vs~~~~----------~~~e---~i~----~~~~~~~~~QLy~~ 132 (367)
..|++++-++. .++.-...++.+.+.|.. ++.=.+++ .+.| ++. +...-|.++.+...
T Consensus 93 ~~p~~~~i~g~----~~~~~~~~a~~~~~~g~d~~iein~~~P~~~g~~~~g~~~e~~~~iv~~vr~~~~~Pv~vKi~~~ 168 (311)
T 1jub_A 93 EGPIFFSIAGM----SAAENIAMLKKIQESDFSGITELNLSCPNVPGEPQLAYDFEATEKLLKEVFTFFTKPLGVKLPPY 168 (311)
T ss_dssp SSCCEEEECCS----SHHHHHHHHHHHHHSCCCSEEEEESCCCCSSSCCCGGGCHHHHHHHHHHHTTTCCSCEEEEECCC
T ss_pred CCCEEEEcCCC----CHHHHHHHHHHHHhcCCCeEEEEeccCCCCCCcccccCCHHHHHHHHHHHHHhcCCCEEEEECCC
Confidence 45776664421 122234677777888866 43211210 1222 222 22235788888766
Q ss_pred CCHHHHHHHHHHHHHcCCcEEEEecCCCCCCchhHHhhhhcCCCCccccccccccccCccccccchhhHHHhhhccCccc
Q 017718 133 KDRNVVAQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLTLKNFQGLDLGKMDEANDSGLAAYVAGQIDRSL 212 (367)
Q Consensus 133 ~d~~~~~~~l~ra~~~G~~ai~itvd~p~~g~r~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~ 212 (367)
-+.+...++++.++++|+++|.++-- ...|.. -|....- | .... .......++. .....
T Consensus 169 ~~~~~~~~~a~~~~~~G~d~i~v~~~-~~~g~~-i~~~~~~--~---~~~~-------~~~~gG~sg~-------~~~~~ 227 (311)
T 1jub_A 169 FDLVHFDIMAEILNQFPLTYVNSVNS-IGNGLF-IDPEAES--V---VIKP-------KDGFGGIGGA-------YIKPT 227 (311)
T ss_dssp CSHHHHHHHHHHHTTSCCCEEEECCC-EEEEEC-EETTTTE--E---SCSG-------GGGEEEEESG-------GGHHH
T ss_pred CCHHHHHHHHHHHHHcCCcEEEecCC-CCcCce-eccCCCC--c---cccc-------CCCCCccccc-------cccHH
Confidence 67777788899999999999987422 100000 0000000 0 0000 0000000000 00112
Q ss_pred cHH---HHHhhc--CCCEEEEec-CCHHHHHHHHHcCCcEEEE
Q 017718 213 SWK---WLQTIT--KLPILVKGV-LTAEDARIAVQAGAAGIIV 249 (367)
Q Consensus 213 ~~~---~l~~~~--~~Pv~vK~v-~~~~~a~~~~~~G~d~i~v 249 (367)
.|+ .+++.+ ++||+.-+- .+.+++..+..+|||+|.+
T Consensus 228 ~~~~i~~v~~~~~~~ipvi~~GGI~~~~da~~~l~~GAd~V~v 270 (311)
T 1jub_A 228 ALANVRAFYTRLKPEIQIIGTGGIETGQDAFEHLLCGATMLQI 270 (311)
T ss_dssp HHHHHHHHHTTSCTTSEEEEESSCCSHHHHHHHHHHTCSEEEE
T ss_pred HHHHHHHHHHhcCCCCCEEEECCCCCHHHHHHHHHcCCCEEEE
Confidence 343 677777 799887664 6899999999999999988
|
| >1s2w_A Phosphoenolpyruvate phosphomutase; phosphonopyruvate, phosphonate biosynthesis pathway, isomera; 1.69A {Mytilus edulis} SCOP: c.1.12.7 PDB: 1m1b_A 1s2t_A 1s2v_A 1pym_A 1s2u_A | Back alignment and structure |
|---|
Probab=90.89 E-value=0.94 Score=42.40 Aligned_cols=71 Identities=20% Similarity=0.133 Sum_probs=49.8
Q ss_pred HHHHHHHHcCCcEEEEcCCCCCCCCCccchHHHHHHHHHHhcCCCcEEEecCCCCHHHHHHHHHcCCCEEEechHHHHH
Q 017718 234 EDARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFIGRPVVYS 312 (367)
Q Consensus 234 ~~a~~~~~~G~d~i~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~~~via~GGI~~~~dv~kal~lGAd~V~ig~~~l~~ 312 (367)
+.|+...++|||.|.+- + +.++.+.+.++.+.++.++|++++-+-....++.+.-.+|...|.++...+.+
T Consensus 174 ~Ra~ay~eAGAd~i~~e--~------~~~~~~~~~~i~~~~~~~~P~i~~~~~~~~~~~~eL~~lGv~~v~~~~~~~ra 244 (295)
T 1s2w_A 174 KRAEAYRNAGADAILMH--S------KKADPSDIEAFMKAWNNQGPVVIVPTKYYKTPTDHFRDMGVSMVIWANHNLRA 244 (295)
T ss_dssp HHHHHHHHTTCSEEEEC--C------CSSSSHHHHHHHHHHTTCSCEEECCSTTTTSCHHHHHHHTCCEEEECSHHHHH
T ss_pred HHHHHHHHcCCCEEEEc--C------CCCCHHHHHHHHHHcCCCCCEEEeCCCCCCCCHHHHHHcCCcEEEEChHHHHH
Confidence 45788999999999982 2 13456677788888855599998733111123455556999999999877664
|
| >3vav_A 3-methyl-2-oxobutanoate hydroxymethyltransferase; structural genomics, seattle structural genomics center for infectious disease; 1.80A {Burkholderia thailandensis} SCOP: c.1.12.8 PDB: 3ez4_A | Back alignment and structure |
|---|
Probab=90.75 E-value=1.6 Score=40.33 Aligned_cols=84 Identities=19% Similarity=0.130 Sum_probs=57.0
Q ss_pred CCCEEEEecCCHHHHHHHHHcCCcEEEEcCCCCC----CCCCccchHH-HH---HHHHHHhcCCCcEEEec---CCCCHH
Q 017718 222 KLPILVKGVLTAEDARIAVQAGAAGIIVSNHGAR----QLDYVPATIM-AL---EEVVKATQGRIPVFLDG---GVRRGT 290 (367)
Q Consensus 222 ~~Pv~vK~v~~~~~a~~~~~~G~d~i~vs~~gg~----~~~~~~~~~~-~l---~~i~~~~~~~~~via~G---GI~~~~ 290 (367)
+-|+++=.+-+.-.|+.+.++|+|.|.+....+. ..|..+-+++ .+ +.+++.+ .+.||++|- |..+++
T Consensus 28 g~~i~m~tayDa~sA~l~e~aG~d~ilvGdSl~~~~lG~~dt~~vtldem~~h~~aV~r~~-~~~~vvaD~pfgsY~s~~ 106 (275)
T 3vav_A 28 GEKIAMLTCYDASFAALLDRANVDVQLIGDSLGNVLQGQTTTLPVTLDDIAYHTACVARAQ-PRALIVADLPFGTYGTPA 106 (275)
T ss_dssp TCCEEEEECCSHHHHHHHHHTTCSEEEECTTHHHHTTCCSSSTTCCHHHHHHHHHHHHHTC-CSSEEEEECCTTSCSSHH
T ss_pred CCcEEEEeCcCHHHHHHHHHcCCCEEEECcHHHHHHcCCCCCCccCHHHHHHHHHHHHhcC-CCCCEEEecCCCCCCCHH
Confidence 5789888888999999999999999965432221 1234444443 33 3333322 258899974 456888
Q ss_pred HHH----HHHHcCCCEEEec
Q 017718 291 DVF----KALALGASGIFIG 306 (367)
Q Consensus 291 dv~----kal~lGAd~V~ig 306 (367)
+++ +.+..||++|-|=
T Consensus 107 ~a~~~a~rl~kaGa~aVklE 126 (275)
T 3vav_A 107 DAFASAVKLMRAGAQMVKFE 126 (275)
T ss_dssp HHHHHHHHHHHTTCSEEEEE
T ss_pred HHHHHHHHHHHcCCCEEEEC
Confidence 875 5666899999874
|
| >1qop_A Tryptophan synthase alpha chain; lyase, carbon-oxygen lyase, tryptophan biosynthesis, pyridoxal phosphate; HET: IPL PLP; 1.4A {Salmonella typhimurium} SCOP: c.1.2.4 PDB: 1k8x_A* 1wbj_A* 2clk_A* 2j9z_A* 3cep_A* 1k8y_A* 1a5s_A* 1a50_A* 1c29_A* 1c8v_A* 1c9d_A* 1bks_A* 1cx9_A* 1fuy_A* 1cw2_A* 1k7e_A* 1k7f_A* 1k7x_A* 1k3u_A* 1k8z_A* ... | Back alignment and structure |
|---|
Probab=90.75 E-value=1.2 Score=40.93 Aligned_cols=36 Identities=33% Similarity=0.360 Sum_probs=31.1
Q ss_pred HHHHhhcCCCEEEEecCC-HHHHHHHHHcCCcEEEEc
Q 017718 215 KWLQTITKLPILVKGVLT-AEDARIAVQAGAAGIIVS 250 (367)
Q Consensus 215 ~~l~~~~~~Pv~vK~v~~-~~~a~~~~~~G~d~i~vs 250 (367)
+.+|+..++||.+-+..+ ++++..+..+|||+++|.
T Consensus 198 ~~lr~~~~~pi~vggGI~t~e~~~~~~~agAD~vVVG 234 (268)
T 1qop_A 198 EKLKEYHAAPALQGFGISSPEQVSAAVRAGAAGAISG 234 (268)
T ss_dssp HHHHHTTCCCEEEESSCCSHHHHHHHHHTTCSEEEEC
T ss_pred HHHHhccCCcEEEECCCCCHHHHHHHHHcCCCEEEEC
Confidence 478887899999987655 999999999999999994
|
| >3fkr_A L-2-keto-3-deoxyarabonate dehydratase; DHDPS/NAL family, complex, pyruvate, lyase; HET: KPI; 1.80A {Azospirillum brasilense} PDB: 3fkk_A | Back alignment and structure |
|---|
Probab=90.75 E-value=11 Score=35.24 Aligned_cols=180 Identities=17% Similarity=0.165 Sum_probs=99.1
Q ss_pred cceEeCcccchhccCChhhHHHHHHHHHcCCcee--ec---CCCCCCHHHHH-------hh-CC-CceEEEEeecCCHHH
Q 017718 72 MPIMIAPTAMQKMAHPEGEYATARAASAAGTIMT--LS---SWSTSSVEEVA-------ST-GP-GIRFFQLYVYKDRNV 137 (367)
Q Consensus 72 ~Pi~iAPm~~~~l~~~~~e~~~a~aa~~~G~~~~--vs---~~~~~~~e~i~-------~~-~~-~~~~~QLy~~~d~~~ 137 (367)
.|.++.|+.-.+-.+.+.-..+.+-.-+.|+... .| +..+.+.||-. +. .. -|.+...- ..+-..
T Consensus 13 ~~a~vTPf~~dg~iD~~~l~~lv~~li~~Gv~gl~v~GtTGE~~~Ls~~Er~~v~~~~~~~~~grvpviaGvg-~~~t~~ 91 (309)
T 3fkr_A 13 FPVVPTTFADTGDLDLASQKRAVDFMIDAGSDGLCILANFSEQFAITDDERDVLTRTILEHVAGRVPVIVTTS-HYSTQV 91 (309)
T ss_dssp CCBCCCCBCTTSSBCHHHHHHHHHHHHHTTCSCEEESSGGGTGGGSCHHHHHHHHHHHHHHHTTSSCEEEECC-CSSHHH
T ss_pred EEeeeCCCCcCCCcCHHHHHHHHHHHHHcCCCEEEECccccCcccCCHHHHHHHHHHHHHHhCCCCcEEEecC-CchHHH
Confidence 3556677743332333333456666667787533 23 34556666522 22 22 45666654 356666
Q ss_pred HHHHHHHHHHcCCcEEEEecCCCCCC--chhHHhhhhcCCCCccccccccccccCccccccchhhHHHhhhccCccccHH
Q 017718 138 VAQLVRRAERAGFKAIALTVDTPRLG--RREADIKNRFTLPPFLTLKNFQGLDLGKMDEANDSGLAAYVAGQIDRSLSWK 215 (367)
Q Consensus 138 ~~~~l~ra~~~G~~ai~itvd~p~~g--~r~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~ 215 (367)
..++.+.|+++|++++.+. .|... ++ | + ..++.+ .++
T Consensus 92 ai~la~~A~~~Gadavlv~--~Pyy~~~~~----------~---s----------------~~~l~~----------~f~ 130 (309)
T 3fkr_A 92 CAARSLRAQQLGAAMVMAM--PPYHGATFR----------V---P----------------EAQIFE----------FYA 130 (309)
T ss_dssp HHHHHHHHHHTTCSEEEEC--CSCBTTTBC----------C---C----------------HHHHHH----------HHH
T ss_pred HHHHHHHHHHcCCCEEEEc--CCCCccCCC----------C---C----------------HHHHHH----------HHH
Confidence 7789999999999999873 24320 00 0 0 001111 234
Q ss_pred HHHhhcCCCEEEEec------CCHHHHHHHHH-c-CCcEEEEcCCCCCCCCCccchHHHHHHHHHHhcCCCcEEEecCCC
Q 017718 216 WLQTITKLPILVKGV------LTAEDARIAVQ-A-GAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVR 287 (367)
Q Consensus 216 ~l~~~~~~Pv~vK~v------~~~~~a~~~~~-~-G~d~i~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~~~via~GGI~ 287 (367)
.+.+.+++||++=.+ .+++...++.+ . .+-+|-.. .....+.+.++.+..++.+..+.+|
T Consensus 131 ~va~a~~lPiilYn~P~tg~~l~~~~~~~La~~~pnIvgiK~~---------~~~~~~~~~~~~~~~~~~~~~~~~G--- 198 (309)
T 3fkr_A 131 RVSDAIAIPIMVQDAPASGTALSAPFLARMAREIEQVAYFXIE---------TPGAANKLRELIRLGGDAIEGPWDG--- 198 (309)
T ss_dssp HHHHHCSSCEEEEECGGGCCCCCHHHHHHHHHHSTTEEEEEEC---------SSSHHHHHHHHHHHHGGGCCEEEEC---
T ss_pred HHHHhcCCCEEEEeCCCCCCCCCHHHHHHHHhhCCCEEEEECC---------CcchHHHHHHHHHhcCCceeeecCC---
Confidence 676778999998765 56787777764 3 23333211 1123445555555543333223333
Q ss_pred CHHH---HHHHHHcCCCEEEech
Q 017718 288 RGTD---VFKALALGASGIFIGR 307 (367)
Q Consensus 288 ~~~d---v~kal~lGAd~V~ig~ 307 (367)
.| .+.++++||+++..+.
T Consensus 199 --~d~~~l~~~l~~G~~G~i~~n 219 (309)
T 3fkr_A 199 --EEAITLLADLHAGATGAMTGG 219 (309)
T ss_dssp --GGGTTHHHHHHTTCCEECCCS
T ss_pred --chHHHHHHHHHCCCcEEEEhh
Confidence 33 4578999999987664
|
| >2r91_A 2-keto-3-deoxy-(6-phospho-)gluconate aldolase; TIM barrel, thermophilic, lyase; 2.00A {Thermoproteus tenax} PDB: 2r94_A | Back alignment and structure |
|---|
Probab=90.72 E-value=10 Score=34.92 Aligned_cols=174 Identities=16% Similarity=0.191 Sum_probs=97.7
Q ss_pred ceEeCcccchhccCChhhHHHHHHHHHcCCceee--cC---CCCCCHHHHH-------hhCCCceEEEEeecCCHHHHHH
Q 017718 73 PIMIAPTAMQKMAHPEGEYATARAASAAGTIMTL--SS---WSTSSVEEVA-------STGPGIRFFQLYVYKDRNVVAQ 140 (367)
Q Consensus 73 Pi~iAPm~~~~l~~~~~e~~~a~aa~~~G~~~~v--s~---~~~~~~e~i~-------~~~~~~~~~QLy~~~d~~~~~~ 140 (367)
|.++.|+. .+-.+.+.-..+.+-.-+.|+...+ || ..+.+.+|-. +...+ .+...- ..+-+...+
T Consensus 5 ~a~vTPf~-dg~iD~~~l~~lv~~li~~Gv~gl~v~GttGE~~~Ls~~Er~~v~~~~~~~~~g-vi~Gvg-~~~t~~ai~ 81 (286)
T 2r91_A 5 APVITTFR-GGRLDPELFANHVKNITSKGVDVVFVAGTTGLGPALSLQEKMELTDAATSAARR-VIVQVA-SLNADEAIA 81 (286)
T ss_dssp EECCCCEE-TTEECHHHHHHHHHHHHHTTCCEEEETSTTTTGGGSCHHHHHHHHHHHHHHCSS-EEEECC-CSSHHHHHH
T ss_pred EeEecCcC-CCccCHHHHHHHHHHHHHCCCCEEEECccccChhhCCHHHHHHHHHHHHHHhCC-EEEeeC-CCCHHHHHH
Confidence 45567775 5444444444666666778876443 33 3456666532 22334 444543 345666778
Q ss_pred HHHHHHHcCCcEEEEecCCCCCCchhHHhhhhcCCCCcccc-ccccccccCccccccchhhHHHhhhccCccccHHHHHh
Q 017718 141 LVRRAERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLTL-KNFQGLDLGKMDEANDSGLAAYVAGQIDRSLSWKWLQT 219 (367)
Q Consensus 141 ~l~ra~~~G~~ai~itvd~p~~g~r~~~~~~~~~~p~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~l~~ 219 (367)
+.+.|+++|++++.+. .|.. .. .+ ..++.+ .++.+.+
T Consensus 82 la~~A~~~Gadavlv~--~P~y-----------------~~~~s-------------~~~l~~----------~f~~va~ 119 (286)
T 2r91_A 82 LAKYAESRGAEAVASL--PPYY-----------------FPRLS-------------ERQIAK----------YFRDLCS 119 (286)
T ss_dssp HHHHHHHTTCSEEEEC--CSCS-----------------STTCC-------------HHHHHH----------HHHHHHH
T ss_pred HHHHHHhcCCCEEEEc--CCcC-----------------CCCCC-------------HHHHHH----------HHHHHHH
Confidence 8999999999999873 3331 10 00 001111 2346667
Q ss_pred hcCCCEEEEec-------CCHHHHHHHHHcCCcEEEEcCCCCCCCCCccchHHHHHHHHHHhcCCCcEEEecCCCCHHHH
Q 017718 220 ITKLPILVKGV-------LTAEDARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDV 292 (367)
Q Consensus 220 ~~~~Pv~vK~v-------~~~~~a~~~~~~G~d~i~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~~~via~GGI~~~~dv 292 (367)
.+++||++=.+ .+++...+ --.+-+|.-+. ..+..+.++.+ .++++.|+ +| +..-+
T Consensus 120 a~~lPiilYn~P~~tg~~l~~~~~~~--~pnivgiKds~----------gd~~~~~~~~~-~~~~f~v~-~G---~d~~~ 182 (286)
T 2r91_A 120 AVSIPVFLYNYPAAVGRDVDARAAKE--LGCIRGVKDTN----------ESLAHTLAYKR-YLPQARVY-NG---SDSLV 182 (286)
T ss_dssp HCSSCEEEEECHHHHSSCCCHHHHHH--HSCEEEEEECC----------SCHHHHHHHHH-HCTTSEEE-EC---CGGGH
T ss_pred hcCCCEEEEeChhhcCCCCCHHHHHh--cCCEEEEEeCC----------CCHHHHHHHHh-cCCCEEEE-Ec---cHHHH
Confidence 78999998775 45666555 12222332211 12344445555 54566654 45 23446
Q ss_pred HHHHHcCCCEEEechH
Q 017718 293 FKALALGASGIFIGRP 308 (367)
Q Consensus 293 ~kal~lGAd~V~ig~~ 308 (367)
+.++++||+++.-+..
T Consensus 183 ~~~l~~G~~G~is~~a 198 (286)
T 2r91_A 183 FASFAVRLDGVVASSA 198 (286)
T ss_dssp HHHHHTTCSEECCGGG
T ss_pred HHHHHcCCCEEEecHH
Confidence 7889999999988874
|
| >2bdq_A Copper homeostasis protein CUTC; alpha beta protein, structural genomics, PSI, protein structure initiative; 2.30A {Streptococcus agalactiae} | Back alignment and structure |
|---|
Probab=90.65 E-value=0.22 Score=44.80 Aligned_cols=70 Identities=16% Similarity=0.241 Sum_probs=52.3
Q ss_pred CCHHHHHHHHHcCCcEEEEcCC---CCCCCCCccchHHHHHHHH---HHhcCCCcEEE-----ecCCCCH--------HH
Q 017718 231 LTAEDARIAVQAGAAGIIVSNH---GARQLDYVPATIMALEEVV---KATQGRIPVFL-----DGGVRRG--------TD 291 (367)
Q Consensus 231 ~~~~~a~~~~~~G~d~i~vs~~---gg~~~~~~~~~~~~l~~i~---~~~~~~~~via-----~GGI~~~--------~d 291 (367)
.+.++|..|.+.|||-|-+-.. ||.+ |+...+.+++ +.+ ++||.+ .|++... +|
T Consensus 9 ~s~~~a~~A~~~GAdRIELc~~L~~GGlT-----PS~g~i~~~~~~~~~~--~ipV~vMIRPR~GdF~Ys~~E~~~M~~D 81 (224)
T 2bdq_A 9 ENLTDLTRLDKAIISRVELCDNLAVGGTT-----PSYGVIKEANQYLHEK--GISVAVMIRPRGGNFVYNDLELRIMEED 81 (224)
T ss_dssp ETTTTGGGCCTTTCCEEEEEBCGGGTCBC-----CCHHHHHHHHHHHHHT--TCEEEEECCSSSSCSCCCHHHHHHHHHH
T ss_pred CCHHHHHHHHHcCCCEEEEcCCcccCCcC-----CCHHHHHHHHHhhhhc--CCceEEEECCCCCCCcCCHHHHHHHHHH
Confidence 5778899999999999998542 4433 5566666665 665 789888 5666554 36
Q ss_pred HHHHHHcCCCEEEech
Q 017718 292 VFKALALGASGIFIGR 307 (367)
Q Consensus 292 v~kal~lGAd~V~ig~ 307 (367)
+..+..+|||+|.+|-
T Consensus 82 i~~~~~~GadGvV~G~ 97 (224)
T 2bdq_A 82 ILRAVELESDALVLGI 97 (224)
T ss_dssp HHHHHHTTCSEEEECC
T ss_pred HHHHHHcCCCEEEEee
Confidence 7777889999999994
|
| >2poz_A Putative dehydratase; octamer, structural genomics, P protein structure initiative, NEW YORK SGX research center structural genomics, nysgxrc; 2.04A {Mesorhizobium loti} | Back alignment and structure |
|---|
Probab=90.60 E-value=1.3 Score=42.86 Aligned_cols=133 Identities=17% Similarity=0.150 Sum_probs=84.1
Q ss_pred CCHHHHHHHHHHHHHcCCcEEEEecCCCCCCchhHHhhhhcCCCCccccccccccccCccccccchhhHHHhhhccCccc
Q 017718 133 KDRNVVAQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLTLKNFQGLDLGKMDEANDSGLAAYVAGQIDRSL 212 (367)
Q Consensus 133 ~d~~~~~~~l~ra~~~G~~ai~itvd~p~~g~r~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~ 212 (367)
.+++.+.+.++++.+.||+++=+.+++...|.. .+++. +. ++... +...
T Consensus 136 ~~~~~~~~~a~~~~~~Gf~~vKik~g~~~~g~~----~~~~~-~g-------------------g~~~~-------~~~~ 184 (392)
T 2poz_A 136 DTPDEFARAVERPLKEGYGALKFYPLAQRVGSA----LQHVT-RR-------------------SMSAE-------AIEL 184 (392)
T ss_dssp CSHHHHHHHTHHHHHTTCSEEEECCCCEEETTE----EECCB-TT-------------------BCCHH-------HHHH
T ss_pred CCHHHHHHHHHHHHHcCCCEEEEeccccccccc----ccccc-cC-------------------Ccchh-------hHHH
Confidence 467777778888889999999988765432110 00000 00 00000 0011
Q ss_pred c---HHHHHhhc--CCCEEEEec--CCHHH----HHHHHHcCCcEEEEcCCCCCCCCCccchHHHHHHHHHHhcCCCcEE
Q 017718 213 S---WKWLQTIT--KLPILVKGV--LTAED----ARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVF 281 (367)
Q Consensus 213 ~---~~~l~~~~--~~Pv~vK~v--~~~~~----a~~~~~~G~d~i~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~~~vi 281 (367)
+ .+.+|+.+ +++|.+..- .+.++ ++.+.+.|++.|-- ...+..++.+.++++.+ ++||+
T Consensus 185 ~~e~v~avr~a~G~d~~l~vD~n~~~~~~~a~~~~~~l~~~~i~~iE~--------P~~~~~~~~~~~l~~~~--~ipIa 254 (392)
T 2poz_A 185 AYRRVKAVRDAAGPEIELMVDLSGGLTTDETIRFCRKIGELDICFVEE--------PCDPFDNGALKVISEQI--PLPIA 254 (392)
T ss_dssp HHHHHHHHHHHHCTTSEEEEECTTCSCHHHHHHHHHHHGGGCEEEEEC--------CSCTTCHHHHHHHHHHC--SSCEE
T ss_pred HHHHHHHHHHhcCCCCEEEEECCCCCCHHHHHHHHHHHHhcCCCEEEC--------CCCcccHHHHHHHHhhC--CCCEE
Confidence 1 23677766 578888753 35555 44556667665531 11234677888888776 79999
Q ss_pred EecCCCCHHHHHHHHHcC-CCEEEec
Q 017718 282 LDGGVRRGTDVFKALALG-ASGIFIG 306 (367)
Q Consensus 282 a~GGI~~~~dv~kal~lG-Ad~V~ig 306 (367)
+++.+.+..++.+++..| +|.|++-
T Consensus 255 ~dE~~~~~~~~~~~i~~~~~d~v~ik 280 (392)
T 2poz_A 255 VGERVYTRFGFRKIFELQACGIIQPD 280 (392)
T ss_dssp ECTTCCHHHHHHHHHTTTCCSEECCC
T ss_pred ecCCcCCHHHHHHHHHcCCCCEEecC
Confidence 999999999999999987 8999873
|
| >2ps2_A Putative mandelate racemase/muconate lactonizing enzyme; structural genomics, NYSGXRC, target 9440A, enolase superfamily, PSI-2; 1.80A {Aspergillus oryzae RIB40} | Back alignment and structure |
|---|
Probab=90.51 E-value=5.6 Score=37.88 Aligned_cols=116 Identities=16% Similarity=0.125 Sum_probs=78.1
Q ss_pred cCCHHHHHHHHHHHHHcCCcEEEEecCCCCCCchhHHhhhhcCCCCccccccccccccCccccccchhhHHHhhhccCcc
Q 017718 132 YKDRNVVAQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLTLKNFQGLDLGKMDEANDSGLAAYVAGQIDRS 211 (367)
Q Consensus 132 ~~d~~~~~~~l~ra~~~G~~ai~itvd~p~~g~r~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~ 211 (367)
..+++.+.+.++++.+.||+++-++++.+. + .+
T Consensus 144 ~~~~~~~~~~a~~~~~~Gf~~iKik~g~~~---~--------------------------------------------~~ 176 (371)
T 2ps2_A 144 VGEPEDMRARVAKYRAKGYKGQSVKISGEP---V--------------------------------------------TD 176 (371)
T ss_dssp SCCHHHHHHHHHHHHTTTCCEEEEECCSCH---H--------------------------------------------HH
T ss_pred CCCHHHHHHHHHHHHHhChheEEeecCCCH---H--------------------------------------------HH
Confidence 357888888888888999999988765210 0 00
Q ss_pred c-cHHHHHhhc--CCCEEEEec--CCHHHH----HHH-HHcCCcEEEEcCCCCCCCCCccchHHHHHHHHHHhcCCCcEE
Q 017718 212 L-SWKWLQTIT--KLPILVKGV--LTAEDA----RIA-VQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVF 281 (367)
Q Consensus 212 ~-~~~~l~~~~--~~Pv~vK~v--~~~~~a----~~~-~~~G~d~i~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~~~vi 281 (367)
. -.+.+|+.. +++|.+..- .+.+++ +.+ .+.|+ .|- +. -+ .++.+.++++.+ ++||+
T Consensus 177 ~e~v~avr~a~g~~~~l~vDan~~~~~~~a~~~~~~l~~~~~i-~iE-------~P--~~-~~~~~~~l~~~~--~iPI~ 243 (371)
T 2ps2_A 177 AKRITAALANQQPDEFFIVDANGKLSVETALRLLRLLPHGLDF-ALE-------AP--CA-TWRECISLRRKT--DIPII 243 (371)
T ss_dssp HHHHHHHTTTCCTTCEEEEECTTBCCHHHHHHHHHHSCTTCCC-EEE-------CC--BS-SHHHHHHHHTTC--CSCEE
T ss_pred HHHHHHHHHhcCCCCEEEEECCCCcCHHHHHHHHHHHHhhcCC-cCc-------CC--cC-CHHHHHHHHhhC--CCCEE
Confidence 0 122566655 467777653 355554 334 45565 432 11 11 667777777655 79999
Q ss_pred EecCCCCHHHHHHHHHcC-CCEEEech
Q 017718 282 LDGGVRRGTDVFKALALG-ASGIFIGR 307 (367)
Q Consensus 282 a~GGI~~~~dv~kal~lG-Ad~V~ig~ 307 (367)
+++.+.+..|+.+++..| +|.|++--
T Consensus 244 ~dE~~~~~~~~~~~i~~~~~d~v~ik~ 270 (371)
T 2ps2_A 244 YDELATNEMSIVKILADDAAEGIDLKI 270 (371)
T ss_dssp ESTTCCSHHHHHHHHHHTCCSEEEEEH
T ss_pred eCCCcCCHHHHHHHHHhCCCCEEEech
Confidence 999999999999999987 89999864
|
| >1vqt_A Orotidine 5'-phosphate decarboxylase; TM0332, structural GEN joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.00A {Thermotoga maritima} SCOP: c.1.2.3 | Back alignment and structure |
|---|
Probab=90.47 E-value=0.25 Score=44.00 Aligned_cols=58 Identities=14% Similarity=0.154 Sum_probs=38.4
Q ss_pred HHHHHHHcCCcEEEEcCCCCCCCCCccchHHHHHHHHHHhcCCCcEEEecCCCCHH---H------HHHHHHcCCCEEEe
Q 017718 235 DARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGT---D------VFKALALGASGIFI 305 (367)
Q Consensus 235 ~a~~~~~~G~d~i~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~~~via~GGI~~~~---d------v~kal~lGAd~V~i 305 (367)
.|+. .+.|+| ++.+. +.+.++++.++ .+ +..+||+-.. | ..+ +..|||.+.+
T Consensus 131 ~a~~-~e~G~d-vV~~~-------------~~~~~ir~~~~--~~-~v~pGI~~~~~~~dq~rv~t~~~-i~aGad~iVv 191 (213)
T 1vqt_A 131 IEKL-NKLGCD-FVLPG-------------PWAKALREKIK--GK-ILVPGIRMEVKADDQKDVVTLEE-MKGIANFAVL 191 (213)
T ss_dssp HHHH-HHHTCE-EECCH-------------HHHHHHTTTCC--SC-EEECCBC---------CCBCHHH-HTTTCSEEEE
T ss_pred HHHH-hcCCCE-EEEcH-------------HHHHHHHHHCC--CC-EEECCCCCCCCccchhhcCCHHH-HHCCCCEEEE
Confidence 3666 889999 55421 34455554443 35 8889996432 2 567 8899999999
Q ss_pred chHHHH
Q 017718 306 GRPVVY 311 (367)
Q Consensus 306 g~~~l~ 311 (367)
||+++.
T Consensus 192 GR~I~~ 197 (213)
T 1vqt_A 192 GREIYL 197 (213)
T ss_dssp SHHHHT
T ss_pred ChhhcC
Confidence 999975
|
| >1z41_A YQJM, probable NADH-dependent flavin oxidoreductase YQJ; FMN, beta-alpha-barrel; HET: FMN; 1.30A {Bacillus subtilis} SCOP: c.1.4.1 PDB: 1z42_A* 1z44_A* 1z48_A* | Back alignment and structure |
|---|
Probab=90.31 E-value=2.8 Score=39.67 Aligned_cols=87 Identities=13% Similarity=0.080 Sum_probs=59.0
Q ss_pred CCceEEEEee------cCCHHHHHHHHHHHHHcCCcEEEEecCCCCCCchhHHhhhhcCCCCccccccccccccCccccc
Q 017718 122 PGIRFFQLYV------YKDRNVVAQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLTLKNFQGLDLGKMDEA 195 (367)
Q Consensus 122 ~~~~~~QLy~------~~d~~~~~~~l~ra~~~G~~ai~itvd~p~~g~r~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~ 195 (367)
.-+.++.|-. +.+.+...+++++++++|++.|.++-..... .. .|.
T Consensus 209 ~~pv~vris~~~~~~~g~~~~~~~~~a~~l~~~Gvd~i~v~~~~~~~--------~~--~~~------------------ 260 (338)
T 1z41_A 209 DGPLFVRVSASDYTDKGLDIADHIGFAKWMKEQGVDLIDCSSGALVH--------AD--INV------------------ 260 (338)
T ss_dssp CSCEEEEEECCCCSTTSCCHHHHHHHHHHHHHTTCCEEEEECCCSSC--------CC--CCC------------------
T ss_pred CCcEEEEecCcccCCCCCCHHHHHHHHHHHHHcCCCEEEEecCcccc--------CC--CCC------------------
Confidence 4467777654 2346677788999999999999886532100 00 000
Q ss_pred cchhhHHHhhhccCccccH---HHHHhhcCCCEEEEecC-CHHHHHHHHHcC-CcEEEE
Q 017718 196 NDSGLAAYVAGQIDRSLSW---KWLQTITKLPILVKGVL-TAEDARIAVQAG-AAGIIV 249 (367)
Q Consensus 196 ~~~~~~~~~~~~~d~~~~~---~~l~~~~~~Pv~vK~v~-~~~~a~~~~~~G-~d~i~v 249 (367)
.+...| ..+|+.+++||+.-+.. +.+++..+++.| +|.|.+
T Consensus 261 -------------~~~~~~~~~~~ir~~~~iPVi~~Ggi~s~~~a~~~l~~G~aD~V~i 306 (338)
T 1z41_A 261 -------------FPGYQVSFAEKIREQADMATGAVGMITDGSMAEEILQNGRADLIFI 306 (338)
T ss_dssp -------------CTTTTHHHHHHHHHHHCCEEEECSSCCSHHHHHHHHHTTSCSEEEE
T ss_pred -------------CccchHHHHHHHHHHCCCCEEEECCCCCHHHHHHHHHcCCceEEee
Confidence 011122 27888889999987764 899999999999 999988
|
| >3zwt_A Dihydroorotate dehydrogenase (quinone), mitochond; oxidoreductase; HET: FMN ORO KFZ; 1.55A {Homo sapiens} PDB: 1d3h_A* 2bxv_A* 2prh_A* 2prl_A* 2prm_A* 3f1q_A* 3fj6_A* 3fjl_A* 3g0u_A* 3g0x_A* 3zws_A* 1d3g_A* 3u2o_A* 2fpv_A* 2fpt_A* 2fpy_A* 2fqi_A* 3kvl_A* 3kvk_A* 3kvj_A* ... | Back alignment and structure |
|---|
Probab=90.20 E-value=0.95 Score=43.70 Aligned_cols=100 Identities=21% Similarity=0.193 Sum_probs=62.4
Q ss_pred CceEEEEeecCCHHHHHHHHHHHHHcCCcEEEEecCCCCCCchhHHhhhhcCCCCccccccccccccCccccccchhhHH
Q 017718 123 GIRFFQLYVYKDRNVVAQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLTLKNFQGLDLGKMDEANDSGLAA 202 (367)
Q Consensus 123 ~~~~~QLy~~~d~~~~~~~l~ra~~~G~~ai~itvd~p~~g~r~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~ 202 (367)
.|.++.+-+.-+.+.+.++++.++++|+++|.++--+.. |.. ...|. ..+. .+.-++.
T Consensus 221 ~Pv~vKi~p~~~~~~~~~ia~~~~~aGadgi~v~ntt~~---r~~-----~~~~~---~~~~---------~gGlSG~-- 278 (367)
T 3zwt_A 221 PAVLVKIAPDLTSQDKEDIASVVKELGIDGLIVTNTTVS---RPA-----GLQGA---LRSE---------TGGLSGK-- 278 (367)
T ss_dssp CEEEEEECSCCCHHHHHHHHHHHHHHTCCEEEECCCBSC---CCT-----TCCCT---TTTS---------SSEEEEG--
T ss_pred ceEEEEeCCCCCHHHHHHHHHHHHHcCCCEEEEeCCCcc---ccc-----ccccc---cccc---------cCCcCCc--
Confidence 578888876667778889999999999999987532211 100 00000 0000 0000000
Q ss_pred HhhhccCccccHH---HHHhhc--CCCEEEEe-cCCHHHHHHHHHcCCcEEEE
Q 017718 203 YVAGQIDRSLSWK---WLQTIT--KLPILVKG-VLTAEDARIAVQAGAAGIIV 249 (367)
Q Consensus 203 ~~~~~~d~~~~~~---~l~~~~--~~Pv~vK~-v~~~~~a~~~~~~G~d~i~v 249 (367)
.....+|+ .+++.+ ++||+.-+ +.+.++|..+.++|||+|.+
T Consensus 279 -----~i~p~a~~~v~~i~~~v~~~ipvI~~GGI~s~~da~~~l~~GAd~V~v 326 (367)
T 3zwt_A 279 -----PLRDLSTQTIREMYALTQGRVPIIGVGGVSSGQDALEKIRAGASLVQL 326 (367)
T ss_dssp -----GGHHHHHHHHHHHHHHTTTCSCEEEESSCCSHHHHHHHHHHTCSEEEE
T ss_pred -----ccchhHHHHHHHHHHHcCCCceEEEECCCCCHHHHHHHHHcCCCEEEE
Confidence 01112333 677777 79988765 57899999999999999998
|
| >2nv1_A Pyridoxal biosynthesis lyase PDXS; (beta/alpha)8-barrel, synthase; 2.08A {Bacillus subtilis} PDB: 2nv2_A* 1znn_A | Back alignment and structure |
|---|
Probab=90.12 E-value=2.1 Score=39.83 Aligned_cols=83 Identities=28% Similarity=0.305 Sum_probs=55.1
Q ss_pred HHhhcCCCEEEEecCCHHHHHHHHHcCCcEEEEcCC---CCCCCCC--ccchHHHHHHHHHHhcCCCcEEEecCCCC--H
Q 017718 217 LQTITKLPILVKGVLTAEDARIAVQAGAAGIIVSNH---GARQLDY--VPATIMALEEVVKATQGRIPVFLDGGVRR--G 289 (367)
Q Consensus 217 l~~~~~~Pv~vK~v~~~~~a~~~~~~G~d~i~vs~~---gg~~~~~--~~~~~~~l~~i~~~~~~~~~via~GGI~~--~ 289 (367)
+.+..+.++++ .+...+.|+.+.++|+|+|.+-+. --+...+ .....+.+.++++.+ .+||++ +++. -
T Consensus 16 ~~~~~~~g~i~-~~~~~~~a~~~~~~Ga~~I~~l~p~~~~~~~~~G~~~~~~~~~i~~I~~~~--~iPv~~--k~r~g~~ 90 (305)
T 2nv1_A 16 MAEMQKGGVIM-DVINAEQAKIAEEAGAVAVMALERVPADIRAAGGVARMADPTIVEEVMNAV--SIPVMA--KARIGHI 90 (305)
T ss_dssp HHHTTTTCEEE-EESSHHHHHHHHHTTCSEEEECCC-------CCCCCCCCCHHHHHHHHHHC--SSCEEE--EECTTCH
T ss_pred HHHHccCCeee-cCCHHHHHHHHHHcCCCEEEEcCCCcchhhhccCcccCCCHHHHHHHHHhC--CCCEEe--cccccch
Confidence 33445678887 667788999999999999943220 0000111 223567788887766 799985 4444 6
Q ss_pred HHHHHHHHcCCCEEE
Q 017718 290 TDVFKALALGASGIF 304 (367)
Q Consensus 290 ~dv~kal~lGAd~V~ 304 (367)
.++..++++|||+|.
T Consensus 91 ~~~~~~~a~GAd~V~ 105 (305)
T 2nv1_A 91 VEARVLEAMGVDYID 105 (305)
T ss_dssp HHHHHHHHHTCSEEE
T ss_pred HHHHHHHHCCCCEEE
Confidence 667777789999996
|
| >3dz1_A Dihydrodipicolinate synthase; lysine biosynthesis, pyruvate, TIM barrel, NYSGXRC, PSI2, structural genomics; 1.87A {Rhodopseudomonas palustris} SCOP: c.1.10.0 | Back alignment and structure |
|---|
Probab=90.11 E-value=12 Score=34.89 Aligned_cols=178 Identities=11% Similarity=0.093 Sum_probs=98.1
Q ss_pred ceEeCcccchhccCChhhHHHHHHHHHcCCceee--c---CCCCCCHHHHH-------hhCC-CceEEEEeecCCHHHHH
Q 017718 73 PIMIAPTAMQKMAHPEGEYATARAASAAGTIMTL--S---SWSTSSVEEVA-------STGP-GIRFFQLYVYKDRNVVA 139 (367)
Q Consensus 73 Pi~iAPm~~~~l~~~~~e~~~a~aa~~~G~~~~v--s---~~~~~~~e~i~-------~~~~-~~~~~QLy~~~d~~~~~ 139 (367)
|.++.|+.-.+-.+.+.-..+.+-.-+.|+...+ | +..+.+.+|-. +... -|.+...- ..+-....
T Consensus 14 ~a~vTPf~~dg~iD~~~l~~lv~~li~~Gv~Gl~v~GtTGE~~~Lt~~Er~~v~~~~v~~~grvpViaGvg-~~~t~~ai 92 (313)
T 3dz1_A 14 AIAPTPFHDDGKIDDVSIDRLTDFYAEVGCEGVTVLGILGEAPKLDAAEAEAVATRFIKRAKSMQVIVGVS-APGFAAMR 92 (313)
T ss_dssp EECCCCBCTTSCBCHHHHHHHHHHHHHTTCSEEEESTGGGTGGGSCHHHHHHHHHHHHHHCTTSEEEEECC-CSSHHHHH
T ss_pred EEeeCCCCCCCCcCHHHHHHHHHHHHHCCCCEEEeCccCcChhhCCHHHHHHHHHHHHHHcCCCcEEEecC-CCCHHHHH
Confidence 4556676433323333334666677778875432 3 33556666522 2222 35556654 35666777
Q ss_pred HHHHHHHHcCCcEEEEecCCCCCCchhHHhhhhcCCCCccccccccccccCccccccchhhHHHhhhccCccccHHHHHh
Q 017718 140 QLVRRAERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLTLKNFQGLDLGKMDEANDSGLAAYVAGQIDRSLSWKWLQT 219 (367)
Q Consensus 140 ~~l~ra~~~G~~ai~itvd~p~~g~r~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~l~~ 219 (367)
++.+.|+++|++++.+. .|.. + | + ..++.+ .++.|.+
T Consensus 93 ~la~~A~~~Gadavlv~--~P~~--~----------~------s-------------~~~l~~----------~f~~va~ 129 (313)
T 3dz1_A 93 RLARLSMDAGAAGVMIA--PPPS--L----------R------T-------------DEQITT----------YFRQATE 129 (313)
T ss_dssp HHHHHHHHHTCSEEEEC--CCTT--C----------C------S-------------HHHHHH----------HHHHHHH
T ss_pred HHHHHHHHcCCCEEEEC--CCCC--C----------C------C-------------HHHHHH----------HHHHHHH
Confidence 88999999999999872 2321 0 0 0 001111 1346767
Q ss_pred hcC--CCEEEEec-------CCHHHHHHHHH-cC-CcEEEEcCCCCCCCCCccchHHHHHHHHHHhc----CCCcEEEec
Q 017718 220 ITK--LPILVKGV-------LTAEDARIAVQ-AG-AAGIIVSNHGARQLDYVPATIMALEEVVKATQ----GRIPVFLDG 284 (367)
Q Consensus 220 ~~~--~Pv~vK~v-------~~~~~a~~~~~-~G-~d~i~vs~~gg~~~~~~~~~~~~l~~i~~~~~----~~~~via~G 284 (367)
.++ +||++=.+ .+++...++.+ .. +-+|--+ .......+.++.+..+ .++.|+. |
T Consensus 130 a~~~~lPiilYn~P~~tg~~l~~~~~~~La~~~pnIvgiKd~---------~~~~~~~~~~~~~~~~~~~~~~f~v~~-G 199 (313)
T 3dz1_A 130 AIGDDVPWVLQDYPLTLSVVMTPKVIRQIVMDSASCVMLKHE---------DWPGLEKITTLRGFQKDGSLRPLSILC-G 199 (313)
T ss_dssp HHCTTSCEEEEECHHHHCCCCCHHHHHHHHHHCSSEEEEEEC---------CSSCHHHHHHHHHHHHHTSSCCCEEEE-C
T ss_pred hCCCCCcEEEEeCccccCcCCCHHHHHHHHHhCCCEEEEEcC---------CCCCHHHHHHHHHhcCccCCCCeEEEe-C
Confidence 777 99998765 56788777764 32 3233321 1123444555555443 4565553 3
Q ss_pred CCCCHHHHHH-HHHcCCCEEEech
Q 017718 285 GVRRGTDVFK-ALALGASGIFIGR 307 (367)
Q Consensus 285 GI~~~~dv~k-al~lGAd~V~ig~ 307 (367)
. ....+- ++++||+++..|.
T Consensus 200 ~---d~~~l~~~l~~G~~G~i~~~ 220 (313)
T 3dz1_A 200 N---GGLFLDFEMERGADGAMTGY 220 (313)
T ss_dssp G---GGTTHHHHHHHTCCEEEECC
T ss_pred C---cHHHHHHHHHCCCcEEEeCc
Confidence 1 112344 5899999998775
|
| >2r91_A 2-keto-3-deoxy-(6-phospho-)gluconate aldolase; TIM barrel, thermophilic, lyase; 2.00A {Thermoproteus tenax} PDB: 2r94_A | Back alignment and structure |
|---|
Probab=90.05 E-value=1.1 Score=41.50 Aligned_cols=87 Identities=13% Similarity=0.165 Sum_probs=50.7
Q ss_pred HHHHHHcCCcEEEEcCCCCCCCCCcc-chHHHHHHHHHHhcCCCcEEE-ecCCCCHHHHHH----HHHcCCCEEEechHH
Q 017718 236 ARIAVQAGAAGIIVSNHGARQLDYVP-ATIMALEEVVKATQGRIPVFL-DGGVRRGTDVFK----ALALGASGIFIGRPV 309 (367)
Q Consensus 236 a~~~~~~G~d~i~vs~~gg~~~~~~~-~~~~~l~~i~~~~~~~~~via-~GGI~~~~dv~k----al~lGAd~V~ig~~~ 309 (367)
++.+.+.|+|+|++.|+.|-...-.. -..+++..+++.+.+ ||+ .|+..+ .++++ +-.+|||++++-.|+
T Consensus 25 v~~li~~Gv~gl~v~GttGE~~~Ls~~Er~~v~~~~~~~~~g---vi~Gvg~~~t-~~ai~la~~A~~~Gadavlv~~P~ 100 (286)
T 2r91_A 25 VKNITSKGVDVVFVAGTTGLGPALSLQEKMELTDAATSAARR---VIVQVASLNA-DEAIALAKYAESRGAEAVASLPPY 100 (286)
T ss_dssp HHHHHHTTCCEEEETSTTTTGGGSCHHHHHHHHHHHHHHCSS---EEEECCCSSH-HHHHHHHHHHHHTTCSEEEECCSC
T ss_pred HHHHHHCCCCEEEECccccChhhCCHHHHHHHHHHHHHHhCC---EEEeeCCCCH-HHHHHHHHHHHhcCCCEEEEcCCc
Confidence 56678899999999765442111111 123445555565543 554 554444 44442 334799999999998
Q ss_pred HHH-hhccChHHHHHHHHHHH
Q 017718 310 VYS-LAAEGEKGVRRVLEMLR 329 (367)
Q Consensus 310 l~~-l~~~G~~~v~~~i~~l~ 329 (367)
++. . .++++.++++.+.
T Consensus 101 y~~~~---s~~~l~~~f~~va 118 (286)
T 2r91_A 101 YFPRL---SERQIAKYFRDLC 118 (286)
T ss_dssp SSTTC---CHHHHHHHHHHHH
T ss_pred CCCCC---CHHHHHHHHHHHH
Confidence 763 2 3555555554443
|
| >2isw_A Putative fructose-1,6-bisphosphate aldolase; class II fructose-1,6-bisphosphate aldolase, glycolytic pathway, giardia lamblia, drug target; HET: PGH; 1.75A {Giardia intestinalis} PDB: 2isv_A* 3ohi_A* 3gay_A* 3gak_A* 3gb6_A* | Back alignment and structure |
|---|
Probab=90.02 E-value=5.1 Score=37.87 Aligned_cols=109 Identities=17% Similarity=0.232 Sum_probs=76.7
Q ss_pred CCHHHHHHHH-HcCCcEEEEcC---CCCCCCCCccc----hHHHHHHHHHHhcCCCcEEEecCC----------------
Q 017718 231 LTAEDARIAV-QAGAAGIIVSN---HGARQLDYVPA----TIMALEEVVKATQGRIPVFLDGGV---------------- 286 (367)
Q Consensus 231 ~~~~~a~~~~-~~G~d~i~vs~---~gg~~~~~~~~----~~~~l~~i~~~~~~~~~via~GGI---------------- 286 (367)
.++++|.... +.|+|.+-++- ||-+... +.+ .++.|.+|.+.+ ++|+..=||=
T Consensus 153 TdPeea~~Fv~~TgvD~LAvaiGt~HG~Yk~~-~~p~~~L~~~~L~~I~~~~--~vpLVlHGgSsvp~~~~~~~~~~gg~ 229 (323)
T 2isw_A 153 TEPQDAKKFVELTGVDALAVAIGTSHGAYKFK-SESDIRLAIDRVKTISDLT--GIPLVMHGSSSVPKDVKDMINKYGGK 229 (323)
T ss_dssp CCHHHHHHHHHHHCCSEEEECSSCCSSSBCCC-C----CCCCHHHHHHHHHH--CSCEEECSCCCCCHHHHHHHHHTTCC
T ss_pred CCHHHHHHHHHHHCCCEEEEecCccccccCCC-CCcccccCHHHHHHHHHHh--CCCeEEECCCCCCHHHHHHHHHhccc
Confidence 6788877665 79999999963 6654322 233 367899999888 7999998843
Q ss_pred ------CCHHHHHHHHHcCCCEEEechHHHHHhhc-------cC-----h-HHHHHHHHHHHHHHHHHHHHhCCC
Q 017718 287 ------RRGTDVFKALALGASGIFIGRPVVYSLAA-------EG-----E-KGVRRVLEMLREEFELAMALSGCR 342 (367)
Q Consensus 287 ------~~~~dv~kal~lGAd~V~ig~~~l~~l~~-------~G-----~-~~v~~~i~~l~~el~~~m~~~G~~ 342 (367)
..-+++.|++.+|..-|=|+|-+-++... +. + .-+....+.+++.++..|..+|+.
T Consensus 230 ~~~~~Gvp~e~i~~ai~~GV~KiNi~Tdl~~A~~~~vr~~~~~~~~~~dpr~~l~~~~~a~~~~v~~~~~~~gs~ 304 (323)
T 2isw_A 230 MPDAVGVPIESIVHAIGEGVCKINVDSDSRMAMTGAIRKVFVEHPEKFDPRDYLGPGRDAITEMLIPKIKAFGSA 304 (323)
T ss_dssp CTTCBCCCHHHHHHHHHTTEEEEEECHHHHHHHHHHHHHHHHHCTTCCCTHHHHHHHHHHHHHHHHHHHHHHTCT
T ss_pred cccCCCCCHHHHHHHHHCCCeEEEEChHHHHHHHHHHHHHHHhccccCChHHHHHHHHHHHHHHHHHHHHHhCCC
Confidence 23478999999999999999976554321 11 1 123344567888888889999874
|
| >3n9r_A Fructose-bisphosphate aldolase; FBP aldolase, class II, inhibitor, lyase; HET: TD3; 1.80A {Helicobacter pylori} SCOP: c.1.10.0 PDB: 3c52_A* 3c56_A* 3c4u_A* 3n9s_A* | Back alignment and structure |
|---|
Probab=89.90 E-value=6.9 Score=36.69 Aligned_cols=110 Identities=19% Similarity=0.171 Sum_probs=74.8
Q ss_pred CCHHHHHHH-HHcCCcEEEEcC---CCCCCCCCcc-chHHHHHHHHHHhcCCCcEEEecCC-------------------
Q 017718 231 LTAEDARIA-VQAGAAGIIVSN---HGARQLDYVP-ATIMALEEVVKATQGRIPVFLDGGV------------------- 286 (367)
Q Consensus 231 ~~~~~a~~~-~~~G~d~i~vs~---~gg~~~~~~~-~~~~~l~~i~~~~~~~~~via~GGI------------------- 286 (367)
.++++|... .+.|+|.+-++- ||-+...+.| -.++.|.+|.+.. ++|+..=||=
T Consensus 155 T~Peea~~Fv~~TgvD~LAvaiGt~HG~Yk~~~~p~Ld~~~L~~I~~~~--~~PLVlHGgS~vp~~~~~~~~~~gg~~~~ 232 (307)
T 3n9r_A 155 VNPKEAEQFVKESQVDYLAPAIGTSHGAFKFKGEPKLDFERLQEVKRLT--NIPLVLHGASAIPDNVRKSYLDAGGDLKG 232 (307)
T ss_dssp CCHHHHHHHHHHHCCSEEEECSSCCSSSBCCSSSCCCCHHHHHHHHHHH--CSCEEESSCCCCCHHHHHHHHHTTCCCTT
T ss_pred CCHHHHHHHHHHHCCCEEEEecCCcccccCCCCCCccCHHHHHHHHhcC--CCCeEEeCCCCcchHHHHHHHHhcCccCC
Confidence 578888775 469999999863 6654322222 3778899996655 6999997753
Q ss_pred ---CCHHHHHHHHHcCCCEEEechHHHHHhhc-------cC-----h-HHHHHHHHHHHHHHHHHHHHhCCC
Q 017718 287 ---RRGTDVFKALALGASGIFIGRPVVYSLAA-------EG-----E-KGVRRVLEMLREEFELAMALSGCR 342 (367)
Q Consensus 287 ---~~~~dv~kal~lGAd~V~ig~~~l~~l~~-------~G-----~-~~v~~~i~~l~~el~~~m~~~G~~ 342 (367)
..-+++.|++.+|-.-|=|+|-+-++... +. + .-+....+.+++.++..|..+|+.
T Consensus 233 ~~G~p~e~i~~ai~~GV~KiNi~Tdl~~a~~~~vr~~~~~~~~~~dpr~~~~~~~~a~~~~v~~~~~~~gs~ 304 (307)
T 3n9r_A 233 SKGVPFEFLQESVKGGINKVNTDTDLRIAFIAEVRKVANEDKSQFDLRKFFSPAQLALKNVVKERMKLLGSA 304 (307)
T ss_dssp CBCCCHHHHHHHHHTTEEEEEECHHHHHHHHHHHHHHHHHCTTCCCHHHHHHHHHHHHHHHHHHHHHHHTCT
T ss_pred CCCCCHHHHHHHHHcCceEEEechHHHHHHHHHHHHHHHhCCCcCCHHHHHHHHHHHHHHHHHHHHHHhCCC
Confidence 23578889999999999999977554221 11 1 123333456777777888888864
|
| >1vli_A Spore coat polysaccharide biosynthesis protein SP; 2636322, JCSG, protein structure initiative, BS SPSE, PSI; 2.38A {Bacillus subtilis} SCOP: b.85.1.1 c.1.10.6 | Back alignment and structure |
|---|
Probab=89.79 E-value=4.2 Score=39.39 Aligned_cols=78 Identities=17% Similarity=0.171 Sum_probs=56.5
Q ss_pred HHhhcCCCEEEEecCCHHHHHHHHHcCCcEEEEcCCCCCCCCCccchHHHHHHHHHHhcCCCcEEEecCCCCHHHHHHHH
Q 017718 217 LQTITKLPILVKGVLTAEDARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKAL 296 (367)
Q Consensus 217 l~~~~~~Pv~vK~v~~~~~a~~~~~~G~d~i~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~~~via~GGI~~~~dv~kal 296 (367)
.++..+++++ -.+++.+.+..+.+.|+|.+-+.. .-...+.+|.++.+ ...|||.+-|..|-+++..|.
T Consensus 109 ~~~~~Gi~~~-stpfD~~svd~l~~~~vd~~KIgS-------~~~~N~pLL~~va~---~gKPViLStGmaTl~Ei~~Av 177 (385)
T 1vli_A 109 YCREKQVIFL-STVCDEGSADLLQSTSPSAFKIAS-------YEINHLPLLKYVAR---LNRPMIFSTAGAEISDVHEAW 177 (385)
T ss_dssp HHHHTTCEEE-CBCCSHHHHHHHHTTCCSCEEECG-------GGTTCHHHHHHHHT---TCSCEEEECTTCCHHHHHHHH
T ss_pred HHHHcCCcEE-EccCCHHHHHHHHhcCCCEEEECc-------ccccCHHHHHHHHh---cCCeEEEECCCCCHHHHHHHH
Confidence 3345677774 467899999999999999999832 11335667777654 278999999999999988776
Q ss_pred H----cCCCEEEe
Q 017718 297 A----LGASGIFI 305 (367)
Q Consensus 297 ~----lGAd~V~i 305 (367)
. .|.+-|.+
T Consensus 178 e~i~~~Gn~~iiL 190 (385)
T 1vli_A 178 RTIRAEGNNQIAI 190 (385)
T ss_dssp HHHHTTTCCCEEE
T ss_pred HHHHHCCCCcEEE
Confidence 4 47744444
|
| >4e4u_A Mandalate racemase/muconate lactonizing enzyme; mandelate racemase, aldolase, structural genomics, biology; 1.35A {Unidentified} | Back alignment and structure |
|---|
Probab=89.75 E-value=3.2 Score=40.47 Aligned_cols=130 Identities=18% Similarity=0.185 Sum_probs=84.7
Q ss_pred CCHHHHHHHHHHHHHcCCcEEEEecCCCCCCchhHHhhhhcCCCCccccccccccccCccccccchhhHHHhhhccCccc
Q 017718 133 KDRNVVAQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLTLKNFQGLDLGKMDEANDSGLAAYVAGQIDRSL 212 (367)
Q Consensus 133 ~d~~~~~~~l~ra~~~G~~ai~itvd~p~~g~r~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~ 212 (367)
.+++.+.+.++++.+.||+++=+.++.+..+.. +. .+. .+. .+.++
T Consensus 143 ~~~e~~~~~a~~~~~~G~~~iKlK~g~~~~~~~------g~-~~~-----------------------~~~----~~~d~ 188 (412)
T 4e4u_A 143 DDPDLAAECAAENVKLGFTAVKFDPAGPYTAYS------GH-QLS-----------------------LEV----LDRCE 188 (412)
T ss_dssp SCHHHHHHHHHHHHHHTCSEEEECCSCCCBTTC------CB-CCC-----------------------HHH----HHHHH
T ss_pred CCHHHHHHHHHHHHHcCCCEEEECCCCCCcccc------cc-ccc-----------------------hhh----HHHHH
Confidence 477877777888888999999887765432100 00 000 000 01111
Q ss_pred -cHHHHHhhc--CCCEEEEec--CCHHH----HHHHHHcCCcEEEEcCCCCCCCCCccchHHHHHHHHHHhcCCCcEEEe
Q 017718 213 -SWKWLQTIT--KLPILVKGV--LTAED----ARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLD 283 (367)
Q Consensus 213 -~~~~l~~~~--~~Pv~vK~v--~~~~~----a~~~~~~G~d~i~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~~~via~ 283 (367)
..+.+|+.+ +++|.+..- .+.++ ++.+.+.|++.|-- ...+..++.+.++++.+ .+||+++
T Consensus 189 ~~v~avR~a~G~d~~l~vDaN~~~~~~~A~~~~~~L~~~~i~~iEe--------P~~~~d~~~~~~l~~~~--~iPIa~d 258 (412)
T 4e4u_A 189 LFCRRVREAVGSKADLLFGTHGQMVPSSAIRLAKRLEKYDPLWFEE--------PVPPGQEEAIAQVAKHT--SIPIATG 258 (412)
T ss_dssp HHHHHHHHHHTTSSEEEECCCSCBCHHHHHHHHHHHGGGCCSEEEC--------CSCSSCHHHHHHHHHTC--SSCEEEC
T ss_pred HHHHHHHHHhCCCCeEEEECCCCCCHHHHHHHHHHhhhcCCcEEEC--------CCChhhHHHHHHHHhhC--CCCEEec
Confidence 123777776 478888654 34555 45566778877752 11223577788887766 7999999
Q ss_pred cCCCCHHHHHHHHHcC-CCEEEec
Q 017718 284 GGVRRGTDVFKALALG-ASGIFIG 306 (367)
Q Consensus 284 GGI~~~~dv~kal~lG-Ad~V~ig 306 (367)
..+.+..|+.+++..| +|.|++-
T Consensus 259 E~~~~~~~~~~~i~~~a~d~v~~d 282 (412)
T 4e4u_A 259 ERLTTKYEFHKLLQAGGASILQLN 282 (412)
T ss_dssp TTCCHHHHHHHHHHTTCCSEECCC
T ss_pred CccCCHHHHHHHHHcCCCCEEEeC
Confidence 9999999999999987 7999885
|
| >1o60_A 2-dehydro-3-deoxyphosphooctonate aldolase; structural genomics, transferase; 1.80A {Haemophilus influenzae} SCOP: c.1.10.4 PDB: 3e9a_A | Back alignment and structure |
|---|
Probab=89.71 E-value=7.4 Score=36.20 Aligned_cols=87 Identities=24% Similarity=0.386 Sum_probs=48.6
Q ss_pred cCCCEEEEecC--CHHH----HHHHHHcCCcEEEEcCCCCCCCCCcc--chHHHHHHHHHHhcCCCcEEEec--------
Q 017718 221 TKLPILVKGVL--TAED----ARIAVQAGAAGIIVSNHGARQLDYVP--ATIMALEEVVKATQGRIPVFLDG-------- 284 (367)
Q Consensus 221 ~~~Pv~vK~v~--~~~~----a~~~~~~G~d~i~vs~~gg~~~~~~~--~~~~~l~~i~~~~~~~~~via~G-------- 284 (367)
+++||++|..+ ++++ +..+...|-+-+++--.|++ ..... ..+..++.+++.. ..+||+.|.
T Consensus 131 ~~kPV~lk~G~~~t~~ei~~Av~~i~~~Gn~~i~L~~rg~~-~~y~~~~~dl~~i~~lk~~~-~~~pV~~D~sH~~q~p~ 208 (292)
T 1o60_A 131 TGAVINVKKPQFLSPSQMGNIVEKIEECGNDKIILCDRGTN-FGYDNLIVDMLGFSVMKKAS-KGSPVIFDVTHSLQCRD 208 (292)
T ss_dssp TTCEEEEECCTTSCGGGHHHHHHHHHHTTCCCEEEEECCEE-CSTTCEECCTTHHHHHHHHT-TSCCEEEEHHHHCC---
T ss_pred CCCcEEEeCCCCCCHHHHHHHHHHHHHcCCCeEEEEECCCC-CCCCccccCHHHHHHHHhhC-CCCCEEEECCCcccccC
Confidence 57788888764 3433 44556778765655433432 11111 2445566555543 158999942
Q ss_pred ---CCCCH-----HHHH-HHHHcCCCEEEechHH
Q 017718 285 ---GVRRG-----TDVF-KALALGASGIFIGRPV 309 (367)
Q Consensus 285 ---GI~~~-----~dv~-kal~lGAd~V~ig~~~ 309 (367)
+-..+ ..+. .+.++||++++|=+-+
T Consensus 209 ~~~~~~~g~~~~~~~ia~aAva~Ga~Gl~IE~H~ 242 (292)
T 1o60_A 209 PFGAASSGRRAQVTELARSGLAVGIAGLFLEAHP 242 (292)
T ss_dssp ---------CTTHHHHHHHHHHHCCSEEEEEEES
T ss_pred ccccCCCCChhHHHHHHHHHHHcCCCEEEEEecC
Confidence 33334 2333 5677999999998854
|
| >3b0p_A TRNA-dihydrouridine synthase; TIM barrel, oxidoreductase; HET: FMN; 1.70A {Thermus thermophilus} PDB: 3b0u_X* 3b0v_C* | Back alignment and structure |
|---|
Probab=89.46 E-value=2.9 Score=39.81 Aligned_cols=90 Identities=17% Similarity=0.156 Sum_probs=56.1
Q ss_pred CCceEEEEeecCC----HHHHHHHHHHHHHcCCcEEEEecCCCCCCchhHHhhhhcCCCCccccccccccccCccccccc
Q 017718 122 PGIRFFQLYVYKD----RNVVAQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLTLKNFQGLDLGKMDEAND 197 (367)
Q Consensus 122 ~~~~~~QLy~~~d----~~~~~~~l~ra~~~G~~ai~itvd~p~~g~r~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~ 197 (367)
.-|..+.+-.+.+ .+...+++++++++|+++|.++-..... ++. +.
T Consensus 126 ~~PV~vKiR~g~~~~~~~~~~~~~a~~l~~aG~d~I~V~~r~~~~---------g~~-g~-------------------- 175 (350)
T 3b0p_A 126 RVPVTVKMRLGLEGKETYRGLAQSVEAMAEAGVKVFVVHARSALL---------ALS-TK-------------------- 175 (350)
T ss_dssp SSCEEEEEESCBTTCCCHHHHHHHHHHHHHTTCCEEEEECSCBC------------------------------------
T ss_pred CCceEEEEecCcCccccHHHHHHHHHHHHHcCCCEEEEecCchhc---------ccC-cc--------------------
Confidence 3456665533222 2356778899999999999886432110 110 00
Q ss_pred hhhHHHhhhccCccccHH---HHHhhc-CCCEEEEec-CCHHHHHHHHHcCCcEEEE
Q 017718 198 SGLAAYVAGQIDRSLSWK---WLQTIT-KLPILVKGV-LTAEDARIAVQAGAAGIIV 249 (367)
Q Consensus 198 ~~~~~~~~~~~d~~~~~~---~l~~~~-~~Pv~vK~v-~~~~~a~~~~~~G~d~i~v 249 (367)
. .+ ..+..+|+ .+++.+ ++||++-+- .+.+++..+.+ |+|+|.+
T Consensus 176 ---~---~~-~~~~~~~~~i~~ik~~~~~iPVianGgI~s~eda~~~l~-GaD~V~i 224 (350)
T 3b0p_A 176 ---A---NR-EIPPLRHDWVHRLKGDFPQLTFVTNGGIRSLEEALFHLK-RVDGVML 224 (350)
T ss_dssp -----------CCCCCHHHHHHHHHHCTTSEEEEESSCCSHHHHHHHHT-TSSEEEE
T ss_pred ---c---cc-CCCcccHHHHHHHHHhCCCCeEEEECCcCCHHHHHHHHh-CCCEEEE
Confidence 0 00 01123454 677888 899988775 68999999998 9999998
|
| >4aaj_A N-(5'-phosphoribosyl)anthranilate isomerase; alpha/beta-barrel, hyperthermophilic, phosphoribo isomerase; 1.75A {Pyrococcus furiosus} | Back alignment and structure |
|---|
Probab=89.44 E-value=6.9 Score=35.03 Aligned_cols=84 Identities=19% Similarity=0.283 Sum_probs=53.5
Q ss_pred HHHHhhcCCCEEEEec-C-----C-HHHH----HHHHHcCCcEEEEcCCCCC--CCCCccchHHHHHHHHHHhcCCCcEE
Q 017718 215 KWLQTITKLPILVKGV-L-----T-AEDA----RIAVQAGAAGIIVSNHGAR--QLDYVPATIMALEEVVKATQGRIPVF 281 (367)
Q Consensus 215 ~~l~~~~~~Pv~vK~v-~-----~-~~~a----~~~~~~G~d~i~vs~~gg~--~~~~~~~~~~~l~~i~~~~~~~~~vi 281 (367)
+.+++.+++|++ |-. . . .+++ ..+.+..+|++.+...||+ .+|| +.+..+.. +.|+|
T Consensus 108 ~~l~~~~~~~vi-Ka~~v~~~~~~~~~~~~~~~~~~~~~~~d~~LlDs~GGtG~~fDW-----~~~~~~~~----~~p~i 177 (228)
T 4aaj_A 108 DTLKKEFGVFVM-KAFRVPTISKNPEEDANRLLSEISRYNADMVLLDTGAGSGKLHDL-----RVSSLVAR----KIPVI 177 (228)
T ss_dssp HHHHHHHCCEEE-EEEECCSSCSCHHHHHHHHHHHHHHSCCSEEEEEC-------CCC-----HHHHHHHH----HSCEE
T ss_pred HHHhhccCceEE-EEEEecccccchhhhHHHHHHHHhccCCCEEccCCCCCCcCcCCh-----HHHHHhhh----cCCeE
Confidence 366677777774 432 1 1 2232 3345567999999876665 3444 45555433 47999
Q ss_pred EecCCCCHHHHHHHHH-cCCCEEEechHH
Q 017718 282 LDGGVRRGTDVFKALA-LGASGIFIGRPV 309 (367)
Q Consensus 282 a~GGI~~~~dv~kal~-lGAd~V~ig~~~ 309 (367)
.+||+ +++.|.+++. .+..+|=+.+.+
T Consensus 178 LAGGL-~peNV~~Ai~~~~P~gVDVsSGV 205 (228)
T 4aaj_A 178 VAGGL-NAENVEEVIKVVKPYGVDVSSGV 205 (228)
T ss_dssp EESSC-CTTTHHHHHHHHCCSEEEESGGG
T ss_pred EECCC-CHHHHHHHHHHhCCCEEEeCCCC
Confidence 99999 5788999987 799999888843
|
| >3rr1_A GALD, putative D-galactonate dehydratase; enolase, magnesium binding site, lyase; 1.95A {Ralstonia pickettii} PDB: 3rra_A | Back alignment and structure |
|---|
Probab=89.23 E-value=3.3 Score=40.35 Aligned_cols=128 Identities=12% Similarity=0.039 Sum_probs=83.2
Q ss_pred cCCHHHHHHHHHHHHHcCCcEEEEecCCCCCCchhHHhhhhcCCCCccccccccccccCccccccchhhHHHhhhccCcc
Q 017718 132 YKDRNVVAQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLTLKNFQGLDLGKMDEANDSGLAAYVAGQIDRS 211 (367)
Q Consensus 132 ~~d~~~~~~~l~ra~~~G~~ai~itvd~p~~g~r~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~ 211 (367)
..+++.+.+.++++.+.|++++=+ ++++..+. . . . ...+ +.+
T Consensus 123 ~~~~e~~~~~a~~~~~~G~~~iKl-~G~~~~~~---------------~----~------~--------~~~~----~~d 164 (405)
T 3rr1_A 123 GDRPADVIAGMKALQAGGFDHFKL-NGCEEMGI---------------I----D------T--------SRAV----DAA 164 (405)
T ss_dssp CSSHHHHHHHHHHHHHTTCCEEEE-ESCCSSSC---------------B----C------S--------HHHH----HHH
T ss_pred CCCHHHHHHHHHHHHHcCCCEEEE-ecCCcccc---------------c----c------c--------chhH----HHH
Confidence 456788888888888899999887 65442100 0 0 0 0000 111
Q ss_pred c-cHHHHHhhc--CCCEEEEec--CCHHH----HHHHHHcCCcEEEEcCCCCCCCCCccchHHHHHHHHHHhcCCCcEEE
Q 017718 212 L-SWKWLQTIT--KLPILVKGV--LTAED----ARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFL 282 (367)
Q Consensus 212 ~-~~~~l~~~~--~~Pv~vK~v--~~~~~----a~~~~~~G~d~i~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~~~via 282 (367)
+ ..+.+|+.+ +++|.+..- .+.++ ++.+.+.|++.|-- ...+..++.+.++++.+ .+||++
T Consensus 165 ~e~v~avR~avG~d~~L~vDaN~~~~~~~A~~~~~~L~~~~i~~iEe--------P~~~~d~~~~~~l~~~~--~iPIa~ 234 (405)
T 3rr1_A 165 VARVAEIRSAFGNTVEFGLDFHGRVSAPMAKVLIKELEPYRPLFIEE--------PVLAEQAETYARLAAHT--HLPIAA 234 (405)
T ss_dssp HHHHHHHHHTTGGGSEEEEECCSCBCHHHHHHHHHHHGGGCCSCEEC--------SSCCSSTHHHHHHHTTC--SSCEEE
T ss_pred HHHHHHHHHHhCCCceEEEECCCCCCHHHHHHHHHHHHhcCCCEEEC--------CCCcccHHHHHHHHhcC--CCCEEe
Confidence 1 123777776 578888753 35555 45566778777642 11123566777777655 799999
Q ss_pred ecCCCCHHHHHHHHHcC-CCEEEech
Q 017718 283 DGGVRRGTDVFKALALG-ASGIFIGR 307 (367)
Q Consensus 283 ~GGI~~~~dv~kal~lG-Ad~V~ig~ 307 (367)
++.+.+..|+.+++..| +|.|++--
T Consensus 235 dE~i~~~~~~~~~l~~~a~d~v~~d~ 260 (405)
T 3rr1_A 235 GERMFSRFDFKRVLEAGGVSILQPDL 260 (405)
T ss_dssp CTTCCSHHHHHHHHHHCCCSEECCBT
T ss_pred cCCcCCHHHHHHHHHHhCCCeEEECh
Confidence 99999999999999986 89998853
|
| >3eoo_A Methylisocitrate lyase; seattle structural genomics center for infectious disease, ssgcid; 2.90A {Burkholderia pseudomallei 1655} SCOP: c.1.12.7 | Back alignment and structure |
|---|
Probab=89.17 E-value=2.8 Score=39.25 Aligned_cols=83 Identities=23% Similarity=0.348 Sum_probs=57.5
Q ss_pred CCCEEEEecCCHHHHHHHHHcCCcEEEEcCCC-C-C---CCCCccchHH----HHHHHHHHhcCCCcEEEec--CCCCHH
Q 017718 222 KLPILVKGVLTAEDARIAVQAGAAGIIVSNHG-A-R---QLDYVPATIM----ALEEVVKATQGRIPVFLDG--GVRRGT 290 (367)
Q Consensus 222 ~~Pv~vK~v~~~~~a~~~~~~G~d~i~vs~~g-g-~---~~~~~~~~~~----~l~~i~~~~~~~~~via~G--GI~~~~ 290 (367)
+.|+++=++-+.-.|+.+.++|+|+|.+++.+ + . ..|.++.+++ .+..|.+.. ++||++|. |..++.
T Consensus 21 ~~~i~~~~a~D~~sA~l~e~aGf~ai~vs~~s~a~~~~G~pD~~~vt~~em~~~~~~I~r~~--~~PviaD~d~Gyg~~~ 98 (298)
T 3eoo_A 21 EQPLQVVGAITAYAAKMAEAVGFKAVYLSGGGVAANSLGIPDLGISTMDDVLVDANRITNAT--NLPLLVDIDTGWGGAF 98 (298)
T ss_dssp SSSEEEEECSSHHHHHHHHHHTCSCEEECHHHHHHHTTCCCSSSCCCHHHHHHHHHHHHHHC--CSCEEEECTTCSSSHH
T ss_pred CCcEEEecCCCHHHHHHHHHcCCCEEEECcHHHHHHhcCCCCCCCCCHHHHHHHHHHHHhhc--CCeEEEECCCCCCCHH
Confidence 56898888899999999999999999997621 1 0 1344544433 344555544 79999976 444666
Q ss_pred HHH----HHHHcCCCEEEec
Q 017718 291 DVF----KALALGASGIFIG 306 (367)
Q Consensus 291 dv~----kal~lGAd~V~ig 306 (367)
++. +.+..||.+|.|=
T Consensus 99 ~v~~~v~~l~~aGaagv~iE 118 (298)
T 3eoo_A 99 NIARTIRSFIKAGVGAVHLE 118 (298)
T ss_dssp HHHHHHHHHHHTTCSEEEEE
T ss_pred HHHHHHHHHHHhCCeEEEEC
Confidence 654 3445899999764
|
| >2wqp_A Polysialic acid capsule biosynthesis protein SIAC; NEUB, inhibitor, TIM barrel, sialic acid synthase, transfera; HET: WQP; 1.75A {Neisseria meningitidis} PDB: 2zdr_A 1xuz_A* 1xuu_A 3cm4_A | Back alignment and structure |
|---|
Probab=89.07 E-value=5.9 Score=37.85 Aligned_cols=77 Identities=9% Similarity=0.068 Sum_probs=56.9
Q ss_pred HhhcCCCEEEEecCCHHHHHHHHHcCCcEEEEcCCCCCCCCCccchHHHHHHHHHHhcCCCcEEEecCCCCHHHHHHHHH
Q 017718 218 QTITKLPILVKGVLTAEDARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALA 297 (367)
Q Consensus 218 ~~~~~~Pv~vK~v~~~~~a~~~~~~G~d~i~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~~~via~GGI~~~~dv~kal~ 297 (367)
++..+++++ -.+++.+++..+.+.|+|.+-+.. .-...+.+|.++.+ ...|||.+-|..|-+++..|..
T Consensus 100 ~~~~Gi~~~-st~~d~~svd~l~~~~v~~~KI~S-------~~~~n~~LL~~va~---~gkPviLstGmat~~Ei~~Ave 168 (349)
T 2wqp_A 100 VESKGMIFI-STLFSRAAALRLQRMDIPAYKIGS-------GECNNYPLIKLVAS---FGKPIILSTGMNSIESIKKSVE 168 (349)
T ss_dssp HHHTTCEEE-EEECSHHHHHHHHHHTCSCEEECG-------GGTTCHHHHHHHHT---TCSCEEEECTTCCHHHHHHHHH
T ss_pred HHHhCCeEE-EeeCCHHHHHHHHhcCCCEEEECc-------ccccCHHHHHHHHh---cCCeEEEECCCCCHHHHHHHHH
Confidence 345678774 467899999999999999999832 11335677777654 2789999999999999877664
Q ss_pred ----cCCCEEEe
Q 017718 298 ----LGASGIFI 305 (367)
Q Consensus 298 ----lGAd~V~i 305 (367)
.|.+.+.+
T Consensus 169 ~i~~~G~~iiLl 180 (349)
T 2wqp_A 169 IIREAGVPYALL 180 (349)
T ss_dssp HHHHHTCCEEEE
T ss_pred HHHHcCCCEEEE
Confidence 47765543
|
| >3bjs_A Mandelate racemase/muconate lactonizing enzyme; enolase, structural genomics, PSI-2, protein struc initiative; 2.70A {Polaromonas SP} | Back alignment and structure |
|---|
Probab=89.06 E-value=1.8 Score=42.41 Aligned_cols=117 Identities=15% Similarity=0.174 Sum_probs=78.9
Q ss_pred CCH-HHHHHHHHHHHHcCCcEEEEecCCCCCCchhHHhhhhcCCCCccccccccccccCccccccchhhHHHhhhccCcc
Q 017718 133 KDR-NVVAQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLTLKNFQGLDLGKMDEANDSGLAAYVAGQIDRS 211 (367)
Q Consensus 133 ~d~-~~~~~~l~ra~~~G~~ai~itvd~p~~g~r~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~ 211 (367)
.++ +.+.+.++++.+.||+++=+.++... + .+
T Consensus 183 ~~~~e~~~~~a~~~~~~Gf~~vKik~g~~~---~--------------------------------------------~d 215 (428)
T 3bjs_A 183 YQPKESLAEEAQEYIARGYKALKLRIGDAA---R--------------------------------------------VD 215 (428)
T ss_dssp SCCHHHHHHHHHHHHHHTCSEEEEECCSCH---H--------------------------------------------HH
T ss_pred CChHHHHHHHHHHHHHCCCCEEEECCCCCH---H--------------------------------------------HH
Confidence 456 77777788888899999887655310 0 00
Q ss_pred c-cHHHHHhhc--CCCEEEEec--CCHHH----HHHHHHcCCcEEEEcCCCCCCCCCccchHHHHHHHHHHhcCC-CcEE
Q 017718 212 L-SWKWLQTIT--KLPILVKGV--LTAED----ARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGR-IPVF 281 (367)
Q Consensus 212 ~-~~~~l~~~~--~~Pv~vK~v--~~~~~----a~~~~~~G~d~i~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~-~~vi 281 (367)
. -.+.+|+.+ +++|.+..- .+.++ ++.+.+.|++.|-- ...+..++.+.++++.+ . +||+
T Consensus 216 ~e~v~avR~avG~d~~l~vDan~~~~~~eai~~~~~L~~~~i~~iEq--------P~~~~d~~~~~~l~~~~--~~iPIa 285 (428)
T 3bjs_A 216 IERVRHVRKVLGDEVDILTDANTAYTMADARRVLPVLAEIQAGWLEE--------PFACNDFASYREVAKIT--PLVPIA 285 (428)
T ss_dssp HHHHHHHHHHHCTTSEEEEECTTCCCHHHHHHHHHHHHHTTCSCEEC--------CSCTTCHHHHHHHTTTC--SSSCEE
T ss_pred HHHHHHHHHhcCCCCEEEEECCCCCCHHHHHHHHHHHHhcCCCEEEC--------CCCccCHHHHHHHHHhC--CCCcEE
Confidence 0 122566655 477777643 34554 45677888887641 11223567777776655 6 9999
Q ss_pred EecCCCCHHHHHHHHHcC-CCEEEec
Q 017718 282 LDGGVRRGTDVFKALALG-ASGIFIG 306 (367)
Q Consensus 282 a~GGI~~~~dv~kal~lG-Ad~V~ig 306 (367)
+++.+.+..++.+++..| +|.|++-
T Consensus 286 ~dE~~~~~~~~~~~i~~~~~d~v~ik 311 (428)
T 3bjs_A 286 AGENHYTRFEFGQMLDAGAVQVWQPD 311 (428)
T ss_dssp ECTTCCSHHHHHHHHTTCCEEEECCB
T ss_pred cCCCcCCHHHHHHHHHhCCCCEEEeC
Confidence 999999999999999987 7888874
|
| >1ofd_A Ferredoxin-dependent glutamate synthase 2; oxidoreductase, complex enzyme, substrate channeling, amidotransferase, flavoprotein, iron-sulphur; HET: FMN AKG; 2.00A {Synechocystis SP} SCOP: b.80.4.1 c.1.4.1 d.153.1.1 PDB: 1llz_A* 1lm1_A* 1llw_A* 1ofe_A* | Back alignment and structure |
|---|
Probab=88.87 E-value=4.6 Score=45.68 Aligned_cols=120 Identities=15% Similarity=0.147 Sum_probs=84.2
Q ss_pred HHHHHHHHcCCcEEEEcCCC-CCCCCC---ccchHHHHHHHHHHh-----cCCCcEEE-ecCCCCHHHHHHHHHcCCCEE
Q 017718 234 EDARIAVQAGAAGIIVSNHG-ARQLDY---VPATIMALEEVVKAT-----QGRIPVFL-DGGVRRGTDVFKALALGASGI 303 (367)
Q Consensus 234 ~~a~~~~~~G~d~i~vs~~g-g~~~~~---~~~~~~~l~~i~~~~-----~~~~~via-~GGI~~~~dv~kal~lGAd~V 303 (367)
++|..+++.|+..|++|..+ +...+. ..|.+-++..+..++ +.++-+++ +|-+|+.-|++-.+-.||++|
T Consensus 585 ~~a~~av~~g~~iliLsDr~~~~~~~~~~~~ip~lla~~avh~~Li~~~~R~~~~lvvesg~~r~~Hh~a~l~GyGA~av 664 (1520)
T 1ofd_A 585 KTAIATVQAGAEILVLTDRPNGAILTENQSFIPPLLAVGAVHHHLIRAGLRLKASLIVDTAQCWSTHHFACLVGYGASAI 664 (1520)
T ss_dssp HHHHHHHHTTCSEEEEESSGGGCCCCTTEEECCHHHHHHHHHHHHHHTTCGGGCEEEEECSSCCSHHHHHHHHHTTCSEE
T ss_pred HHHHHHHHCCCcEEEEcCCCCcCCCCCCccCcCHHHHHHHHHHHHHhcCCcccccEEEEeCCcChHHHHHHHHHcchhhh
Confidence 45788899999999999865 211222 233444444444332 33677777 778999999999999999999
Q ss_pred EechHH--HHHh---------hccC-------hHHHHHHHHHHHHHHHHHHHHhCCCChhhhccccee
Q 017718 304 FIGRPV--VYSL---------AAEG-------EKGVRRVLEMLREEFELAMALSGCRSLKEITRDHIV 353 (367)
Q Consensus 304 ~ig~~~--l~~l---------~~~G-------~~~v~~~i~~l~~el~~~m~~~G~~si~~l~~~~l~ 353 (367)
.=.-++ +..+ ...| ++.+.++++.+.+.|...|..+|.+.++.-++.-+.
T Consensus 665 ~Pyla~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ny~~a~~~Gl~KimskmGIst~~sY~gaqiF 732 (1520)
T 1ofd_A 665 CPYLALESVRQWWLDEKTQKLMENGRLDRIDLPTALKNYRQSVEAGLFKILSKMGISLLASYHGAQIF 732 (1520)
T ss_dssp ECHHHHHHHHHHHSCHHHHHHHTTSSCCCCCHHHHHHHHHHHHHHHHHHHHHHTTCCBHHHHHTCCCE
T ss_pred cHHHHHHHHHHHHhcccchhhhhcCCCCCCCHHHHHHHHHHHHHHHHHHHHhhccHhhhhhcCCceee
Confidence 644333 2222 1122 357889999999999999999999999998877654
|
| >3tj4_A Mandelate racemase; enolase, dehydratase, enzyme function initiative, EFI, lyase; 1.50A {Agrobacterium tumefaciens} PDB: 4h19_A* | Back alignment and structure |
|---|
Probab=88.65 E-value=4.3 Score=38.91 Aligned_cols=81 Identities=10% Similarity=0.050 Sum_probs=56.2
Q ss_pred HHHhhc--CCCEEEEec--CCHHHHH----HHHHcCCcEEEEcCCCCCCCCCccchHHHHHHHHHHhcCCCcEEEecCCC
Q 017718 216 WLQTIT--KLPILVKGV--LTAEDAR----IAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVR 287 (367)
Q Consensus 216 ~l~~~~--~~Pv~vK~v--~~~~~a~----~~~~~G~d~i~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~~~via~GGI~ 287 (367)
.+|+.+ +.++.+..- .+.++|. .+.+.|++.|- + ...+..++.+.++++.. .+||+++..+.
T Consensus 189 avR~~~g~~~~l~vDan~~~~~~~a~~~~~~l~~~~i~~iE-------q-P~~~~d~~~~~~l~~~~--~iPIa~dE~~~ 258 (372)
T 3tj4_A 189 AVRERVDSAVRIAIDGNGKWDLPTCQRFCAAAKDLDIYWFE-------E-PLWYDDVTSHARLARNT--SIPIALGEQLY 258 (372)
T ss_dssp HHHHHSCTTCEEEEECTTCCCHHHHHHHHHHTTTSCEEEEE-------S-CSCTTCHHHHHHHHHHC--SSCEEECTTCC
T ss_pred HHHHHcCCCCcEEeeCCCCCCHHHHHHHHHHHhhcCCCEEE-------C-CCCchhHHHHHHHHhhc--CCCEEeCCCcc
Confidence 677766 467877653 3556553 33444544442 1 11223577788887776 79999999999
Q ss_pred CHHHHHHHHHcC-CCEEEec
Q 017718 288 RGTDVFKALALG-ASGIFIG 306 (367)
Q Consensus 288 ~~~dv~kal~lG-Ad~V~ig 306 (367)
+..|+.+++..| +|.|++-
T Consensus 259 ~~~~~~~~i~~~~~d~v~~k 278 (372)
T 3tj4_A 259 TVDAFRSFIDAGAVAYVQPD 278 (372)
T ss_dssp SHHHHHHHHHTTCCSEECCC
T ss_pred CHHHHHHHHHcCCCCEEEeC
Confidence 999999999987 7998884
|
| >1tqj_A Ribulose-phosphate 3-epimerase; beta-alpha barrel epimerase, isomerase; 1.60A {Synechocystis SP} SCOP: c.1.2.2 | Back alignment and structure |
|---|
Probab=88.61 E-value=1.8 Score=38.76 Aligned_cols=86 Identities=15% Similarity=0.001 Sum_probs=55.3
Q ss_pred HHHHhhcCCCEEEEec-CCH-HHHHHHHHcCCcEEEEcCCCCCCCCCccchHHHHHHHHHHhcCCCcEEEecCCCCHHHH
Q 017718 215 KWLQTITKLPILVKGV-LTA-EDARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDV 292 (367)
Q Consensus 215 ~~l~~~~~~Pv~vK~v-~~~-~~a~~~~~~G~d~i~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~~~via~GGI~~~~dv 292 (367)
+.+|+.++.|+.+-.. .++ +..+.+.++|+|+|+++. ... ......+.++.+++ . .+.+..+=...|+.+.
T Consensus 55 ~~lr~~~~~~~~vhlmv~dp~~~i~~~~~aGadgv~vh~--e~~--~~~~~~~~~~~i~~-~--g~~~gv~~~p~t~~e~ 127 (230)
T 1tqj_A 55 DAIRPLTKKTLDVHLMIVEPEKYVEDFAKAGADIISVHV--EHN--ASPHLHRTLCQIRE-L--GKKAGAVLNPSTPLDF 127 (230)
T ss_dssp HHHGGGCCSEEEEEEESSSGGGTHHHHHHHTCSEEEEEC--STT--TCTTHHHHHHHHHH-T--TCEEEEEECTTCCGGG
T ss_pred HHHHhhcCCcEEEEEEccCHHHHHHHHHHcCCCEEEECc--ccc--cchhHHHHHHHHHH-c--CCcEEEEEeCCCcHHH
Confidence 3777777778774433 343 247889999999999942 200 01123345555543 2 3444444456788888
Q ss_pred HHHHHcCCCEEEech
Q 017718 293 FKALALGASGIFIGR 307 (367)
Q Consensus 293 ~kal~lGAd~V~ig~ 307 (367)
++.+..++|.|.+++
T Consensus 128 ~~~~~~~~D~v~~ms 142 (230)
T 1tqj_A 128 LEYVLPVCDLILIMS 142 (230)
T ss_dssp GTTTGGGCSEEEEES
T ss_pred HHHHHhcCCEEEEEE
Confidence 888888999998887
|
| >1f76_A Dihydroorotate dehydrogenase; monomer, alpha-beta-barrel, FMN binding domain, orotate complex, oxidoreductase; HET: MSE FMN ORO; 2.50A {Bacteria} SCOP: c.1.4.1 | Back alignment and structure |
|---|
Probab=88.50 E-value=2.1 Score=40.40 Aligned_cols=100 Identities=18% Similarity=0.065 Sum_probs=60.2
Q ss_pred CceEEEEeecCCHHHHHHHHHHHHHcCCcEEEEecCCCCCCchhHHhhhhcCCCCccccccccccccCccccccchhhHH
Q 017718 123 GIRFFQLYVYKDRNVVAQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLTLKNFQGLDLGKMDEANDSGLAA 202 (367)
Q Consensus 123 ~~~~~QLy~~~d~~~~~~~l~ra~~~G~~ai~itvd~p~~g~r~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~ 202 (367)
-|.++.+-...+.+.+.++++.++++|+++|.++-.+.. |+ +.+ .+. . .+ . ...-++.
T Consensus 212 ~Pv~vKi~~~~~~~~~~~~a~~l~~~Gvd~i~vsn~~~~---~~-~~~----~~~-~--~~--------~-~gg~~g~-- 269 (336)
T 1f76_A 212 VPIAVKIAPDLSEEELIQVADSLVRHNIDGVIATNTTLD---RS-LVQ----GMK-N--CD--------Q-TGGLSGR-- 269 (336)
T ss_dssp CCEEEECCSCCCHHHHHHHHHHHHHTTCSEEEECCCBCC---CT-TST----TST-T--TT--------C-SSEEEEG--
T ss_pred CceEEEecCCCCHHHHHHHHHHHHHcCCcEEEEeCCccc---cc-ccc----ccc-c--cc--------c-CCCcCCc--
Confidence 578888765455666788899999999999998643211 11 110 000 0 00 0 0000000
Q ss_pred HhhhccCccccHH---HHHhhc--CCCEEEEe-cCCHHHHHHHHHcCCcEEEE
Q 017718 203 YVAGQIDRSLSWK---WLQTIT--KLPILVKG-VLTAEDARIAVQAGAAGIIV 249 (367)
Q Consensus 203 ~~~~~~d~~~~~~---~l~~~~--~~Pv~vK~-v~~~~~a~~~~~~G~d~i~v 249 (367)
......|+ .+++.+ ++||+.-+ +.+.+++..+.++|||+|.+
T Consensus 270 -----~~~~~~~~~i~~i~~~~~~~ipVi~~GGI~~~~da~~~l~~GAd~V~i 317 (336)
T 1f76_A 270 -----PLQLKSTEIIRRLSLELNGRLPIIGVGGIDSVIAAREKIAAGASLVQI 317 (336)
T ss_dssp -----GGHHHHHHHHHHHHHHHTTSSCEEEESSCCSHHHHHHHHHHTCSEEEE
T ss_pred -----hhHHHHHHHHHHHHHHhCCCCCEEEECCCCCHHHHHHHHHCCCCEEEe
Confidence 00011222 677777 79988765 47899999999999999988
|
| >3qfe_A Putative dihydrodipicolinate synthase family PROT; seattle structural genomics center for infectious disease, S coccidioides, valley fever; 2.35A {Coccidioides immitis} | Back alignment and structure |
|---|
Probab=88.30 E-value=17 Score=34.06 Aligned_cols=181 Identities=13% Similarity=0.115 Sum_probs=100.4
Q ss_pred ceEeCccc-chhccCChhhHHHHHHHHHcCCceee--c---CCCCCCHHHHH-------hh-CC-CceEEEEeecCCHHH
Q 017718 73 PIMIAPTA-MQKMAHPEGEYATARAASAAGTIMTL--S---SWSTSSVEEVA-------ST-GP-GIRFFQLYVYKDRNV 137 (367)
Q Consensus 73 Pi~iAPm~-~~~l~~~~~e~~~a~aa~~~G~~~~v--s---~~~~~~~e~i~-------~~-~~-~~~~~QLy~~~d~~~ 137 (367)
|-++.|+. -.+-.+.+.-..+.+-.-+.|+...+ | +..+.+.+|-. +. .. -|.+...- ..+-..
T Consensus 16 ~a~vTPf~~~dg~iD~~~l~~lv~~li~~Gv~gl~v~GtTGE~~~Ls~~Er~~v~~~~~~~~~grvpviaGvg-~~~t~~ 94 (318)
T 3qfe_A 16 CPAVTFFDSKTDTLDLASQERYYAYLARSGLTGLVILGTNAEAFLLTREERAQLIATARKAVGPDFPIMAGVG-AHSTRQ 94 (318)
T ss_dssp EECCCCEETTTTEECHHHHHHHHHHHHTTTCSEEEESSGGGTGGGSCHHHHHHHHHHHHHHHCTTSCEEEECC-CSSHHH
T ss_pred EeeeCCccCCCCCCCHHHHHHHHHHHHHcCCCEEEeCccccChhhCCHHHHHHHHHHHHHHhCCCCcEEEeCC-CCCHHH
Confidence 44566664 23333333334666667777876433 3 33556666522 22 22 46666654 456677
Q ss_pred HHHHHHHHHHcCCcEEEEecCCCCCCchhHHhhhhcCCCCccccccccccccCccccccchhhHHHhhhccCccccHHHH
Q 017718 138 VAQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLTLKNFQGLDLGKMDEANDSGLAAYVAGQIDRSLSWKWL 217 (367)
Q Consensus 138 ~~~~l~ra~~~G~~ai~itvd~p~~g~r~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~l 217 (367)
..++.+.|+++|++++.+. .|..-.+ |. + ..++.+ .++.+
T Consensus 95 ai~la~~a~~~Gadavlv~--~P~y~~k----------p~--~----------------~~~l~~----------~f~~i 134 (318)
T 3qfe_A 95 VLEHINDASVAGANYVLVL--PPAYFGK----------AT--T----------------PPVIKS----------FFDDV 134 (318)
T ss_dssp HHHHHHHHHHHTCSEEEEC--CCCC-------------CC--C----------------HHHHHH----------HHHHH
T ss_pred HHHHHHHHHHcCCCEEEEe--CCcccCC----------CC--C----------------HHHHHH----------HHHHH
Confidence 7789999999999999872 2321000 00 0 001111 23467
Q ss_pred HhhcCCCEEEEec--------CCHHHHHHHHH-cC-CcEEEEcCCCCCCCCCccchHHHHHHHHHHhc-CCCcEEEecCC
Q 017718 218 QTITKLPILVKGV--------LTAEDARIAVQ-AG-AAGIIVSNHGARQLDYVPATIMALEEVVKATQ-GRIPVFLDGGV 286 (367)
Q Consensus 218 ~~~~~~Pv~vK~v--------~~~~~a~~~~~-~G-~d~i~vs~~gg~~~~~~~~~~~~l~~i~~~~~-~~~~via~GGI 286 (367)
.+.+++||++=.+ .+++...++.+ .. +-+|--+ . ..+..+.++.+.+. +++.|+. |
T Consensus 135 a~a~~lPiilYn~P~~t~g~~l~~~~~~~La~~~pnIvgiKds--s--------gd~~~~~~~~~~~~~~~f~v~~-G-- 201 (318)
T 3qfe_A 135 SCQSPLPVVIYNFPGVCNGIDLDSDMITTIARKNPNVVGVKLT--C--------ASVGKITRLAATLPPAAFSVFG-G-- 201 (318)
T ss_dssp HHHCSSCEEEEECCC----CCCCHHHHHHHHHHCTTEEEEEES--S--------CCHHHHHHHHHHSCGGGCEEEE-S--
T ss_pred HhhCCCCEEEEeCCcccCCCCCCHHHHHHHHhhCCCEEEEEeC--C--------CCHHHHHHHHHhcCCCCEEEEE-e--
Confidence 6778899988665 35677777776 43 2222221 1 13444555555442 3455543 4
Q ss_pred CCHHHHHHHHHcCCCEEEechH
Q 017718 287 RRGTDVFKALALGASGIFIGRP 308 (367)
Q Consensus 287 ~~~~dv~kal~lGAd~V~ig~~ 308 (367)
+....+.++++||+++.-+..
T Consensus 202 -~d~~~l~~l~~G~~G~is~~a 222 (318)
T 3qfe_A 202 -QSDFLIGGLSVGSAGCIAAFA 222 (318)
T ss_dssp -CGGGHHHHHHTTCCEEECGGG
T ss_pred -cHHHHHHHHHCCCCEEEecHH
Confidence 234567889999999988874
|
| >3ro6_B Putative chloromuconate cycloisomerase; TIM barrel; 2.20A {Methylococcus capsulatus} PDB: 3rit_A | Back alignment and structure |
|---|
Probab=88.30 E-value=2.6 Score=40.16 Aligned_cols=122 Identities=16% Similarity=0.118 Sum_probs=82.1
Q ss_pred cCCHHHHHHHHHHHHHcCCcEEEEecCCCCCCchhHHhhhhcCCCCccccccccccccCccccccchhhHHHhhhccCcc
Q 017718 132 YKDRNVVAQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLTLKNFQGLDLGKMDEANDSGLAAYVAGQIDRS 211 (367)
Q Consensus 132 ~~d~~~~~~~l~ra~~~G~~ai~itvd~p~~g~r~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~ 211 (367)
..+++.+.+.++++.+.|++++=+.+++.. +.|+.
T Consensus 138 ~~~~~~~~~~a~~~~~~G~~~~K~K~G~~~----~~d~~----------------------------------------- 172 (356)
T 3ro6_B 138 IKPVEETLAEAREHLALGFRVLKVKLCGDE----EQDFE----------------------------------------- 172 (356)
T ss_dssp SCCHHHHHHHHHHHHHTTCCEEEEECCSCH----HHHHH-----------------------------------------
T ss_pred CCCHHHHHHHHHHHHHcCCCEEEEEeCCCH----HHHHH-----------------------------------------
Confidence 357777777777788899999877665311 00000
Q ss_pred ccHHHHHhhc--CCCEEEEec--CCHHH----HHHHHHcCCcEEEEcCCCCCCCCCccchHHHHHHHHHHhcCCCcEEEe
Q 017718 212 LSWKWLQTIT--KLPILVKGV--LTAED----ARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLD 283 (367)
Q Consensus 212 ~~~~~l~~~~--~~Pv~vK~v--~~~~~----a~~~~~~G~d~i~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~~~via~ 283 (367)
..+.+|+.+ ++++.+..- -+.++ ++.+.+.|++.|-= ...+..++.+.++++.. .+||+++
T Consensus 173 -~v~avR~~~g~~~~l~vDan~~~~~~~a~~~~~~l~~~~i~~iEq--------P~~~~d~~~~~~l~~~~--~iPIa~d 241 (356)
T 3ro6_B 173 -RLRRLHETLAGRAVVRVDPNQSYDRDGLLRLDRLVQELGIEFIEQ--------PFPAGRTDWLRALPKAI--RRRIAAD 241 (356)
T ss_dssp -HHHHHHHHHTTSSEEEEECTTCCCHHHHHHHHHHHHHTTCCCEEC--------CSCTTCHHHHHTSCHHH--HHTEEES
T ss_pred -HHHHHHHHhCCCCEEEEeCCCCCCHHHHHHHHHHHHhcCCCEEEC--------CCCCCcHHHHHHHHhcC--CCCEEeC
Confidence 122666665 467877653 34444 45677788877741 11123567777776665 6999999
Q ss_pred cCCCCHHHHHHHHHcC--CCEEEechHH
Q 017718 284 GGVRRGTDVFKALALG--ASGIFIGRPV 309 (367)
Q Consensus 284 GGI~~~~dv~kal~lG--Ad~V~ig~~~ 309 (367)
+-+.+..|+.+++..| +|.|++--..
T Consensus 242 E~~~~~~~~~~~~~~~~~~d~v~~k~~~ 269 (356)
T 3ro6_B 242 ESLLGPADAFALAAPPAACGIFNIKLMK 269 (356)
T ss_dssp TTCCSHHHHHHHHSSSCSCSEEEECHHH
T ss_pred CcCCCHHHHHHHHhcCCcCCEEEEcccc
Confidence 9999999999999976 8999987543
|
| >2gl5_A Putative dehydratase protein; structural genomics, protein structure initiati nysgxrc; 1.60A {Salmonella typhimurium} SCOP: c.1.11.2 d.54.1.1 PDB: 4e6m_A* | Back alignment and structure |
|---|
Probab=88.22 E-value=5.2 Score=38.67 Aligned_cols=81 Identities=12% Similarity=-0.010 Sum_probs=59.5
Q ss_pred HHHhhc--CCCEEEEec--CCHHH----HHHHHHcCCcEEEEcCCCCCCCCCccchHHHHHHHHHHhcCCCcEEEecCCC
Q 017718 216 WLQTIT--KLPILVKGV--LTAED----ARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVR 287 (367)
Q Consensus 216 ~l~~~~--~~Pv~vK~v--~~~~~----a~~~~~~G~d~i~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~~~via~GGI~ 287 (367)
.+|+.. +++|.+..- .+.++ ++.+.+.|++.|-- ...+..++.+.++++.+ ++||++++.+.
T Consensus 210 avR~a~G~d~~l~vDan~~~~~~~ai~~~~~l~~~~i~~iE~--------P~~~~~~~~~~~l~~~~--~iPIa~dE~~~ 279 (410)
T 2gl5_A 210 AMREAMGDDADIIVEIHSLLGTNSAIQFAKAIEKYRIFLYEE--------PIHPLNSDNMQKVSRST--TIPIATGERSY 279 (410)
T ss_dssp HHHHHHCSSSEEEEECTTCSCHHHHHHHHHHHGGGCEEEEEC--------SSCSSCHHHHHHHHHHC--SSCEEECTTCC
T ss_pred HHHHhcCCCCEEEEECCCCCCHHHHHHHHHHHHhcCCCeEEC--------CCChhhHHHHHHHHhhC--CCCEEecCCcC
Confidence 677766 588888753 35555 44566677765531 11234677888888876 79999999999
Q ss_pred CHHHHHHHHHcC-CCEEEec
Q 017718 288 RGTDVFKALALG-ASGIFIG 306 (367)
Q Consensus 288 ~~~dv~kal~lG-Ad~V~ig 306 (367)
+..++.+++..| +|.|++-
T Consensus 280 ~~~~~~~~i~~~~~d~v~ik 299 (410)
T 2gl5_A 280 TRWGYRELLEKQSIAVAQPD 299 (410)
T ss_dssp TTHHHHHHHHTTCCSEECCC
T ss_pred CHHHHHHHHHcCCCCEEecC
Confidence 999999999987 7999874
|
| >2hjp_A Phosphonopyruvate hydrolase; phosporus-Ca cleavage, PEP mutase/isocitrate lyase superfamily; HET: XYS PPR; 1.90A {Variovorax SP} PDB: 2dua_A* 2hrw_A | Back alignment and structure |
|---|
Probab=88.22 E-value=3.7 Score=38.26 Aligned_cols=84 Identities=25% Similarity=0.200 Sum_probs=56.5
Q ss_pred CCCEEEEecCCHHHHHHHHHcCCcEEEEcCCC-C--C-CCCCccchHHH-HHHHHHHhc-CCCcEEEec--CCCCHHHHH
Q 017718 222 KLPILVKGVLTAEDARIAVQAGAAGIIVSNHG-A--R-QLDYVPATIMA-LEEVVKATQ-GRIPVFLDG--GVRRGTDVF 293 (367)
Q Consensus 222 ~~Pv~vK~v~~~~~a~~~~~~G~d~i~vs~~g-g--~-~~~~~~~~~~~-l~~i~~~~~-~~~~via~G--GI~~~~dv~ 293 (367)
+-|+++=++-+.-.|+.+.++|+|+|.+++.+ + . ..|.++-+++- +..++...+ .++||++|. |..++.++.
T Consensus 14 ~~~i~~~~a~D~~sA~~~~~aG~~ai~vs~~~~a~~~G~pD~~~vt~~em~~~~~~I~~~~~~PviaD~d~Gyg~~~~~~ 93 (290)
T 2hjp_A 14 GRLFTAMAAHNPLVAKLAEQAGFGGIWGSGFELSASYAVPDANILSMSTHLEMMRAIASTVSIPLIADIDTGFGNAVNVH 93 (290)
T ss_dssp CCCEEEEECSSHHHHHHHHHHTCSEEEECHHHHHHHTTSCTTTCSCHHHHHHHHHHHHTTCSSCEEEECTTTTSSHHHHH
T ss_pred CCcEEEecCCCHHHHHHHHHcCCCEEEEChHHHHHhCCCCCCCCCCHHHHHHHHHHHHhcCCCCEEEECCCCCCCHHHHH
Confidence 56898888899999999999999999998521 1 1 13444444443 333322222 279999976 444666554
Q ss_pred ----HHHHcCCCEEEe
Q 017718 294 ----KALALGASGIFI 305 (367)
Q Consensus 294 ----kal~lGAd~V~i 305 (367)
+.+..||++|.|
T Consensus 94 ~~v~~l~~aGa~gv~i 109 (290)
T 2hjp_A 94 YVVPQYEAAGASAIVM 109 (290)
T ss_dssp HHHHHHHHHTCSEEEE
T ss_pred HHHHHHHHhCCeEEEE
Confidence 455689999987
|
| >1rd5_A Tryptophan synthase alpha chain, chloroplast; hydroxamic acid, diboa, dimboa, indole, indole-glycerol-PHOS lyase; 2.02A {Zea mays} SCOP: c.1.2.4 PDB: 1tjr_A | Back alignment and structure |
|---|
Probab=88.19 E-value=14 Score=33.15 Aligned_cols=83 Identities=13% Similarity=0.099 Sum_probs=44.0
Q ss_pred HHHhhcCCCEEEEecCCHH---HHHHHHHcCCcEEEEcCCCCCCCCCccchHHHHHHHHHHhcCCCcEEEecCCCCHHHH
Q 017718 216 WLQTITKLPILVKGVLTAE---DARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDV 292 (367)
Q Consensus 216 ~l~~~~~~Pv~vK~v~~~~---~a~~~~~~G~d~i~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~~~via~GGI~~~~dv 292 (367)
.+|+.+++||++-...++. ..+.+.++|+|++++.... . ....+.+..+.+ . .++++.---..+..+.
T Consensus 88 ~ir~~~~~Pv~~m~~~~~~~~~~~~~a~~aGadgv~v~d~~---~---~~~~~~~~~~~~-~--g~~~i~~~a~~t~~e~ 158 (262)
T 1rd5_A 88 EVTPELSCPVVLLSYYKPIMFRSLAKMKEAGVHGLIVPDLP---Y---VAAHSLWSEAKN-N--NLELVLLTTPAIPEDR 158 (262)
T ss_dssp HHGGGCSSCEEEECCSHHHHSCCTHHHHHTTCCEEECTTCB---T---TTHHHHHHHHHH-T--TCEECEEECTTSCHHH
T ss_pred HHHhcCCCCEEEEecCcHHHHHHHHHHHHcCCCEEEEcCCC---h---hhHHHHHHHHHH-c--CCceEEEECCCCCHHH
Confidence 7787788999885433332 1334899999999984311 0 012233333322 2 3333332234454444
Q ss_pred HHH-HHcCCCEEEech
Q 017718 293 FKA-LALGASGIFIGR 307 (367)
Q Consensus 293 ~ka-l~lGAd~V~ig~ 307 (367)
++. ...+.+++.+++
T Consensus 159 ~~~~~~~~~g~v~~~s 174 (262)
T 1rd5_A 159 MKEITKASEGFVYLVS 174 (262)
T ss_dssp HHHHHHHCCSCEEEEC
T ss_pred HHHHHhcCCCeEEEec
Confidence 444 456666666654
|
| >4ef8_A Dihydroorotate dehydrogenase; phenyl isothiocyanate, PYRD, oxidoreductase, oxidoreductase-oxidor inhibitor complex; HET: FMN; 1.56A {Leishmania major} PDB: 3gye_A* 3gz3_A* 4ef9_A* 3tro_A* 3tjx_A* | Back alignment and structure |
|---|
Probab=87.95 E-value=2.1 Score=41.07 Aligned_cols=107 Identities=20% Similarity=0.057 Sum_probs=59.5
Q ss_pred CCCceEEEEeecCCHHHHHHHHHHHHHcC-CcEEEEecCCCCCCchhHHhhh-hcCCCCccccccccccccCccccccch
Q 017718 121 GPGIRFFQLYVYKDRNVVAQLVRRAERAG-FKAIALTVDTPRLGRREADIKN-RFTLPPFLTLKNFQGLDLGKMDEANDS 198 (367)
Q Consensus 121 ~~~~~~~QLy~~~d~~~~~~~l~ra~~~G-~~ai~itvd~p~~g~r~~~~~~-~~~~p~~~~~~~~~~~~~~~~~~~~~~ 198 (367)
...|.++.|-+.-|.+.+.++++.++++| +++|.++ ++-..|-.. |+.. ...+.+ ++. .+.-+
T Consensus 192 ~~~PV~vKi~p~~d~~~~~~~a~~~~~~Gg~d~I~~~-NT~~~g~~i-di~~~~~~~~~----~~~---------~gGlS 256 (354)
T 4ef8_A 192 YPHSFGVKMPPYFDFAHFDAAAEILNEFPKVQFITCI-NSIGNGLVI-DAETESVVIKP----KQG---------FGGLG 256 (354)
T ss_dssp CCSCEEEEECCCCSHHHHHHHHHHHHTCTTEEEEEEC-CCEEEEECE-ETTTTEESCSG----GGG---------EEEEE
T ss_pred hCCCeEEEecCCCCHHHHHHHHHHHHhCCCccEEEEe-cccCcceee-eccCCcccccc----ccc---------cCCCC
Confidence 34688999877667777777888888898 9988752 110000000 0000 000000 000 00000
Q ss_pred hhHHHhhhccCccccHH---HHHhhc-CCCEEEEe-cCCHHHHHHHHHcCCcEEEE
Q 017718 199 GLAAYVAGQIDRSLSWK---WLQTIT-KLPILVKG-VLTAEDARIAVQAGAAGIIV 249 (367)
Q Consensus 199 ~~~~~~~~~~d~~~~~~---~l~~~~-~~Pv~vK~-v~~~~~a~~~~~~G~d~i~v 249 (367)
+. .-...+|+ .+++.. ++||+.=+ +.+.+|+..+..+|||+|.+
T Consensus 257 G~-------~i~p~a~~~i~~v~~~~~~ipII~~GGI~s~~da~~~l~aGAd~V~v 305 (354)
T 4ef8_A 257 GR-------YVLPTALANINAFYRRCPGKLIFGCGGVYTGEDAFLHVLAGASMVQV 305 (354)
T ss_dssp GG-------GGHHHHHHHHHHHHHHCTTSEEEEESCCCSHHHHHHHHHHTEEEEEE
T ss_pred CC-------CCchHHHHHHHHHHHhCCCCCEEEECCcCCHHHHHHHHHcCCCEEEE
Confidence 00 01123454 566665 68987654 58899999999999999988
|
| >3toy_A Mandelate racemase/muconate lactonizing enzyme FA protein; enolase, magnesium binding site, lyase; HET: P4C; 1.80A {Bradyrhizobium SP} PDB: 3tte_A* | Back alignment and structure |
|---|
Probab=87.90 E-value=6 Score=38.08 Aligned_cols=82 Identities=12% Similarity=0.063 Sum_probs=58.5
Q ss_pred HHHhhc--CCCEEEEec--CCHHH----HHHHHHcCCcEEEEcCCCCCCCCCccchHHHHHHHHHHhcCCCcEEEecCCC
Q 017718 216 WLQTIT--KLPILVKGV--LTAED----ARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVR 287 (367)
Q Consensus 216 ~l~~~~--~~Pv~vK~v--~~~~~----a~~~~~~G~d~i~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~~~via~GGI~ 287 (367)
.+|+.+ ++++.+..- -+.++ ++.+.+.|++.|-= ...+..++.+.++++.. .+||.++..+.
T Consensus 205 avR~a~G~~~~l~vDaN~~~~~~~A~~~~~~l~~~~i~~iEe--------P~~~~d~~~~~~l~~~~--~iPIa~dE~~~ 274 (383)
T 3toy_A 205 GLRALLGPDIALMLDFNQSLDPAEATRRIARLADYDLTWIEE--------PVPQENLSGHAAVRERS--EIPIQAGENWW 274 (383)
T ss_dssp HHHHHHCTTSEEEEECTTCSCHHHHHHHHHHHGGGCCSEEEC--------CSCTTCHHHHHHHHHHC--SSCEEECTTCC
T ss_pred HHHHHhCCCCeEEEeCCCCCCHHHHHHHHHHHHhhCCCEEEC--------CCCcchHHHHHHHHhhc--CCCEEeCCCcC
Confidence 667765 467777643 34555 45566677776641 11223567788888776 79999999999
Q ss_pred CHHHHHHHHHcC-CCEEEech
Q 017718 288 RGTDVFKALALG-ASGIFIGR 307 (367)
Q Consensus 288 ~~~dv~kal~lG-Ad~V~ig~ 307 (367)
+..|+.+++..| +|.|++--
T Consensus 275 ~~~~~~~~i~~~a~d~v~ik~ 295 (383)
T 3toy_A 275 FPRGFAEAIAAGASDFIMPDL 295 (383)
T ss_dssp HHHHHHHHHHHTCCSEECCCT
T ss_pred CHHHHHHHHHcCCCCEEEeCc
Confidence 999999999987 78888753
|
| >2gjl_A Hypothetical protein PA1024; 2-nitropropane dioxygenase, 2-nitropropane, FMN, oxidoreduct; HET: FMN; 2.00A {Pseudomonas aeruginosa PAO1} PDB: 2gjn_A* | Back alignment and structure |
|---|
Probab=87.87 E-value=2.2 Score=40.12 Aligned_cols=76 Identities=21% Similarity=0.203 Sum_probs=54.5
Q ss_pred HHHhhcCCCEEEEecCC--------HHHHHHHHHcCCcEEEEcCCCCCCCCCccchHHHHHHHHHHhcCCCcEEEecCCC
Q 017718 216 WLQTITKLPILVKGVLT--------AEDARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVR 287 (367)
Q Consensus 216 ~l~~~~~~Pv~vK~v~~--------~~~a~~~~~~G~d~i~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~~~via~GGI~ 287 (367)
.+++.++.|+.+-...+ .+.++.+.++|+|+|.++ +|. + .+.+..+++. .++++.+ +.
T Consensus 61 ~i~~~~~~p~~v~l~v~~~~~~~~~~~~~~~~~~~g~d~V~~~--~g~------p-~~~~~~l~~~---gi~vi~~--v~ 126 (328)
T 2gjl_A 61 RCRELTDRPFGVNLTLLPTQKPVPYAEYRAAIIEAGIRVVETA--GND------P-GEHIAEFRRH---GVKVIHK--CT 126 (328)
T ss_dssp HHHHHCSSCCEEEEEECCCSSCCCHHHHHHHHHHTTCCEEEEE--ESC------C-HHHHHHHHHT---TCEEEEE--ES
T ss_pred HHHHhcCCCeEEEEeccccccCccHHHHHHHHHhcCCCEEEEc--CCC------c-HHHHHHHHHc---CCCEEee--CC
Confidence 56666667776655443 366889999999999884 331 1 3455555432 5788853 88
Q ss_pred CHHHHHHHHHcCCCEEEe
Q 017718 288 RGTDVFKALALGASGIFI 305 (367)
Q Consensus 288 ~~~dv~kal~lGAd~V~i 305 (367)
+.+++.++...|||++.+
T Consensus 127 t~~~a~~~~~~GaD~i~v 144 (328)
T 2gjl_A 127 AVRHALKAERLGVDAVSI 144 (328)
T ss_dssp SHHHHHHHHHTTCSEEEE
T ss_pred CHHHHHHHHHcCCCEEEE
Confidence 999999999999999998
|
| >3gr7_A NADPH dehydrogenase; flavin, FMN, beta-alpha-barrel, oxidoreductase, flavoprotein; HET: FMN; 2.30A {Geobacillus kaustophilus} PDB: 3gr8_A* | Back alignment and structure |
|---|
Probab=87.83 E-value=5.6 Score=37.69 Aligned_cols=87 Identities=11% Similarity=0.158 Sum_probs=58.8
Q ss_pred CCceEEEEeec------CCHHHHHHHHHHHHHcCCcEEEEecCCCCCCchhHHhhhhcCCCCccccccccccccCccccc
Q 017718 122 PGIRFFQLYVY------KDRNVVAQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLTLKNFQGLDLGKMDEA 195 (367)
Q Consensus 122 ~~~~~~QLy~~------~d~~~~~~~l~ra~~~G~~ai~itvd~p~~g~r~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~ 195 (367)
.-+.++.|-.. .+.+...+++++++++|++.|.++...... . ..+
T Consensus 209 ~~pv~vRls~~~~~~~g~~~~~~~~la~~L~~~Gvd~i~vs~g~~~~-~---------~~~------------------- 259 (340)
T 3gr7_A 209 DGPLFVRISASDYHPDGLTAKDYVPYAKRMKEQGVDLVDVSSGAIVP-A---------RMN------------------- 259 (340)
T ss_dssp CSCEEEEEESCCCSTTSCCGGGHHHHHHHHHHTTCCEEEEECCCSSC-C---------CCC-------------------
T ss_pred CCceEEEeccccccCCCCCHHHHHHHHHHHHHcCCCEEEEecCCccC-C---------CCC-------------------
Confidence 34677777532 235667789999999999998886532110 0 000
Q ss_pred cchhhHHHhhhccCccccH---HHHHhhcCCCEEEEec-CCHHHHHHHHHcC-CcEEEE
Q 017718 196 NDSGLAAYVAGQIDRSLSW---KWLQTITKLPILVKGV-LTAEDARIAVQAG-AAGIIV 249 (367)
Q Consensus 196 ~~~~~~~~~~~~~d~~~~~---~~l~~~~~~Pv~vK~v-~~~~~a~~~~~~G-~d~i~v 249 (367)
..+...| +.+|+.+++||+.-+. .++++|+.+.+.| +|.|.+
T Consensus 260 ------------~~~~~~~~~~~~ik~~~~iPVi~~GgI~s~e~a~~~L~~G~aD~V~i 306 (340)
T 3gr7_A 260 ------------VYPGYQVPFAELIRREADIPTGAVGLITSGWQAEEILQNGRADLVFL 306 (340)
T ss_dssp ------------CCTTTTHHHHHHHHHHTTCCEEEESSCCCHHHHHHHHHTTSCSEEEE
T ss_pred ------------CCccccHHHHHHHHHHcCCcEEeeCCCCCHHHHHHHHHCCCeeEEEe
Confidence 0011122 2788888999988775 5899999999999 999988
|
| >2wkj_A N-acetylneuraminate lyase; directed evolution, sialic acid mimetics, aldolase, S base, carbohydrate metabolism, N-acetylneuraminic acid LYAS; HET: KPI PYR; 1.45A {Escherichia coli} PDB: 2wnq_A 2xfw_A* 2wpb_A* 2wnz_A* 2ygy_A* 2wo5_A* 2wnn_A* 3lbm_A 3lbc_A 3lcf_A 3lcl_A 3lcg_A 3lch_A 3lci_A 1hl2_A 1fdy_A 1fdz_A 1nal_1 3lcx_A 3lcw_A | Back alignment and structure |
|---|
Probab=87.81 E-value=17 Score=33.66 Aligned_cols=181 Identities=15% Similarity=0.117 Sum_probs=100.6
Q ss_pred ceEeCcccchhccCChhhHHHHHHHHHcCCcee--ecC---CCCCCHHHHH-------hh-CC-CceEEEEeecCCHHHH
Q 017718 73 PIMIAPTAMQKMAHPEGEYATARAASAAGTIMT--LSS---WSTSSVEEVA-------ST-GP-GIRFFQLYVYKDRNVV 138 (367)
Q Consensus 73 Pi~iAPm~~~~l~~~~~e~~~a~aa~~~G~~~~--vs~---~~~~~~e~i~-------~~-~~-~~~~~QLy~~~d~~~~ 138 (367)
|.++.|+.-.+-.+.+.-..+.+-.-+.|+... .|| ..+.+.||-. +. .. -|.+...- ..+-...
T Consensus 17 ~a~vTPF~~dg~iD~~~l~~lv~~li~~Gv~Gl~v~GtTGE~~~Ls~eEr~~v~~~~~~~~~grvpViaGvg-~~~t~~a 95 (303)
T 2wkj_A 17 AALLTPFDQQQALDKASLRRLVQFNIQQGIDGLYVGGSTGEAFVQSLSEREQVLEIVAEEAKGKIKLIAHVG-CVSTAES 95 (303)
T ss_dssp EECCCCBCTTSSBCHHHHHHHHHHHHHTTCSEEEESSTTTTGGGSCHHHHHHHHHHHHHHHTTTSEEEEECC-CSSHHHH
T ss_pred EeeEcCCCCCCCcCHHHHHHHHHHHHHcCCCEEEECeeccChhhCCHHHHHHHHHHHHHHhCCCCcEEEecC-CCCHHHH
Confidence 445667643222333333466666677887543 333 3456666522 22 22 35666653 3456667
Q ss_pred HHHHHHHHHcCCcEEEEecCCCCCCchhHHhhhhcCCCCccccccccccccCccccccchhhHHHhhhccCccccHHHHH
Q 017718 139 AQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLTLKNFQGLDLGKMDEANDSGLAAYVAGQIDRSLSWKWLQ 218 (367)
Q Consensus 139 ~~~l~ra~~~G~~ai~itvd~p~~g~r~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~l~ 218 (367)
.++.+.|+++|++++.+. .|.. ...+ ..++.+ .++.+.
T Consensus 96 i~la~~A~~~Gadavlv~--~P~y-----------------~~~s-------------~~~l~~----------~f~~va 133 (303)
T 2wkj_A 96 QQLAASAKRYGFDAVSAV--TPFY-----------------YPFS-------------FEEHCD----------HYRAII 133 (303)
T ss_dssp HHHHHHHHHHTCSEEEEE--CCCS-----------------SCCC-------------HHHHHH----------HHHHHH
T ss_pred HHHHHHHHhCCCCEEEec--CCCC-----------------CCCC-------------HHHHHH----------HHHHHH
Confidence 788999999999999874 2331 0000 001111 224666
Q ss_pred hhcC-CCEEEEec-------CCHHHHHHHHHcC-CcEEEEcCCCCCCCCCccchHHHHHHHHHHhcCCCcEEEecCCCCH
Q 017718 219 TITK-LPILVKGV-------LTAEDARIAVQAG-AAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRG 289 (367)
Q Consensus 219 ~~~~-~Pv~vK~v-------~~~~~a~~~~~~G-~d~i~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~~~via~GGI~~~ 289 (367)
+.++ +||++=.+ .+++...++.+.. +-+|.-+ . ..+..+.++.+. ..++.|+. |. .
T Consensus 134 ~a~~~lPiilYn~P~~tg~~l~~~~~~~La~~pnIvgiK~s--~--------gd~~~~~~~~~~-~~~f~v~~-G~---d 198 (303)
T 2wkj_A 134 DSADGLPMVVYNIPALSGVKLTLDQINTLVTLPGVGALXQT--S--------GDLYQMEQIRRE-HPDLVLYN-GY---D 198 (303)
T ss_dssp HHHTTCCEEEEECHHHHCCCCCHHHHHHHHTSTTEEEEEEC--C--------CCHHHHHHHHHH-CTTCEEEE-CC---G
T ss_pred HhCCCCCEEEEeCccccCCCCCHHHHHHHhcCCCEEEEeCC--C--------CCHHHHHHHHHh-CCCeEEEe-Cc---H
Confidence 7778 99998764 5678777776542 2222221 1 123344455444 33555543 42 3
Q ss_pred HHHHHHHHcCCCEEEechHHHH
Q 017718 290 TDVFKALALGASGIFIGRPVVY 311 (367)
Q Consensus 290 ~dv~kal~lGAd~V~ig~~~l~ 311 (367)
.-++.++.+||+++.-+..-++
T Consensus 199 ~~~~~~l~~G~~G~is~~an~~ 220 (303)
T 2wkj_A 199 NIFASGLLAGADGGIGSTYNIM 220 (303)
T ss_dssp GGHHHHHHHTCCEEEETTHHHH
T ss_pred HHHHHHHHCCCCEEEeCHHHhC
Confidence 4478889999999999976544
|
| >3ugv_A Enolase; enzyme function initiative, EFI, lyase; 2.30A {Alpha proteobacterium BAL199} | Back alignment and structure |
|---|
Probab=87.77 E-value=7.5 Score=37.51 Aligned_cols=84 Identities=13% Similarity=0.088 Sum_probs=59.3
Q ss_pred HHHhhc--CCCEEEEec--CCHHHH----HHHHHcCCcEEEEcCCCCCCCCCccchHHHHHHHHHHhcCCCcEEEecCCC
Q 017718 216 WLQTIT--KLPILVKGV--LTAEDA----RIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVR 287 (367)
Q Consensus 216 ~l~~~~--~~Pv~vK~v--~~~~~a----~~~~~~G~d~i~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~~~via~GGI~ 287 (367)
.+|+.+ ++++.+..- .+.++| +.+.+.|++.|-= ...+..++.+.++++.. .+||.++..+.
T Consensus 211 avR~a~G~~~~l~vDaN~~~~~~~A~~~~~~l~~~~i~~iEq--------P~~~~d~~~~~~l~~~~--~iPIa~dE~~~ 280 (390)
T 3ugv_A 211 AVWDAVGRDTALMVDFNQGLDMAEAMHRTRQIDDLGLEWIEE--------PVVYDNFDGYAQLRHDL--KTPLMIGENFY 280 (390)
T ss_dssp HHHHHHCTTSEEEEECTTCCCHHHHHHHHHHHTTSCCSEEEC--------CSCTTCHHHHHHHHHHC--SSCEEECTTCC
T ss_pred HHHHHhCCCCEEEEECCCCCCHHHHHHHHHHHHhhCCCEEEC--------CCCcccHHHHHHHHHhc--CCCEEeCCCcC
Confidence 667765 467877653 345554 4555667766631 11223577788888776 79999999999
Q ss_pred CHHHHHHHHHcC-CCEEEechHH
Q 017718 288 RGTDVFKALALG-ASGIFIGRPV 309 (367)
Q Consensus 288 ~~~dv~kal~lG-Ad~V~ig~~~ 309 (367)
+..|+.+++..| +|.|++--..
T Consensus 281 ~~~~~~~~i~~~a~d~v~ik~~~ 303 (390)
T 3ugv_A 281 GPREMHQALQAGACDLVMPDFMR 303 (390)
T ss_dssp SHHHHHHHHHTTCCSEECCBHHH
T ss_pred CHHHHHHHHHcCCCCEEEeCccc
Confidence 999999999987 7888876533
|
| >3b8i_A PA4872 oxaloacetate decarboxylase; alpha/beta barrel, helix swapping, lyase; 1.90A {Pseudomonas aeruginosa} | Back alignment and structure |
|---|
Probab=87.69 E-value=2.8 Score=38.96 Aligned_cols=85 Identities=21% Similarity=0.287 Sum_probs=57.8
Q ss_pred CCCEEEEecCCHHHHHHHHHcCCcEEEEcCCC-C-C---CCCCccchHHH-HHHHHHHhc-CCCcEEEec--CCCCHHHH
Q 017718 222 KLPILVKGVLTAEDARIAVQAGAAGIIVSNHG-A-R---QLDYVPATIMA-LEEVVKATQ-GRIPVFLDG--GVRRGTDV 292 (367)
Q Consensus 222 ~~Pv~vK~v~~~~~a~~~~~~G~d~i~vs~~g-g-~---~~~~~~~~~~~-l~~i~~~~~-~~~~via~G--GI~~~~dv 292 (367)
+-|+++=++-+.-.|+.+.++|+|+|.+++.+ + . ..|.++-+++- +..+++..+ .++||++|. |..+++++
T Consensus 20 ~~~i~~~~a~D~~sA~i~e~aGf~ai~vs~s~~a~~~lG~pD~~~vt~~em~~~~~~I~r~~~~PviaD~d~Gyg~~~~~ 99 (287)
T 3b8i_A 20 SRCYHTASVFDPMSARIAADLGFECGILGGSVASLQVLAAPDFALITLSEFVEQATRIGRVARLPVIADADHGYGNALNV 99 (287)
T ss_dssp SCCEECEECCSHHHHHHHHHTTCSCEEECHHHHHHHHHSCCSSSCSCHHHHHHHHHHHHTTCSSCEEEECTTCSSSHHHH
T ss_pred CCcEEEecCCCHHHHHHHHHcCCCEEEeCcHHHHHHhcCCCCCCCCCHHHHHHHHHHHHhcCCCCEEEECCCCCCCHHHH
Confidence 56888888889999999999999999998642 1 0 23445545443 333332222 278999976 45577666
Q ss_pred H----HHHHcCCCEEEec
Q 017718 293 F----KALALGASGIFIG 306 (367)
Q Consensus 293 ~----kal~lGAd~V~ig 306 (367)
. +.+..||++|.|=
T Consensus 100 ~~~v~~l~~aGa~gv~iE 117 (287)
T 3b8i_A 100 MRTVVELERAGIAALTIE 117 (287)
T ss_dssp HHHHHHHHHHTCSEEEEE
T ss_pred HHHHHHHHHhCCeEEEEc
Confidence 5 4556899999873
|
| >1h1y_A D-ribulose-5-phosphate 3-epimerase; oxidative pentose phosphate pathway, isomerase; 1.87A {Oryza sativa} SCOP: c.1.2.2 PDB: 1h1z_A | Back alignment and structure |
|---|
Probab=87.66 E-value=3.6 Score=36.46 Aligned_cols=83 Identities=11% Similarity=-0.000 Sum_probs=52.3
Q ss_pred HHHhhcCCCEEEEec-CC-HHHHHHHHHcCCcEEEEcCCCCCCCCCccch-HHHHHHHHHHhcCCCcEEEecCCCCHHHH
Q 017718 216 WLQTITKLPILVKGV-LT-AEDARIAVQAGAAGIIVSNHGARQLDYVPAT-IMALEEVVKATQGRIPVFLDGGVRRGTDV 292 (367)
Q Consensus 216 ~l~~~~~~Pv~vK~v-~~-~~~a~~~~~~G~d~i~vs~~gg~~~~~~~~~-~~~l~~i~~~~~~~~~via~GGI~~~~dv 292 (367)
.+|+.++.|+.+-.. .+ .+.++.+.++|+|+|.+ |++.. ... .+.+.++++. .+.++.+=.-.++.+.
T Consensus 58 ~lr~~~~~~~~v~lmv~d~~~~i~~~~~agad~v~v--H~~~~----~~~~~~~~~~i~~~---g~~igv~~~p~t~~e~ 128 (228)
T 1h1y_A 58 SLRKHTKAYLDCHLMVTNPSDYVEPLAKAGASGFTF--HIEVS----RDNWQELIQSIKAK---GMRPGVSLRPGTPVEE 128 (228)
T ss_dssp HHHTTCCSEEEEEEESSCGGGGHHHHHHHTCSEEEE--EGGGC----TTTHHHHHHHHHHT---TCEEEEEECTTSCGGG
T ss_pred HHHhhcCCcEEEEEEecCHHHHHHHHHHcCCCEEEE--CCCCc----ccHHHHHHHHHHHc---CCCEEEEEeCCCCHHH
Confidence 667666666664332 33 23478888899999999 55421 123 3445555432 4555555455677677
Q ss_pred HHHHHc---CCCEEEech
Q 017718 293 FKALAL---GASGIFIGR 307 (367)
Q Consensus 293 ~kal~l---GAd~V~ig~ 307 (367)
++.+.- ++|.|.+++
T Consensus 129 ~~~~~~~~~~~d~vl~~s 146 (228)
T 1h1y_A 129 VFPLVEAENPVELVLVMT 146 (228)
T ss_dssp GHHHHHSSSCCSEEEEES
T ss_pred HHHHHhcCCCCCEEEEEe
Confidence 777766 999999976
|
| >2hxt_A L-fuconate dehydratase; enolase superfamily, D-erythromohydr unknown function; HET: EHM; 1.70A {Xanthomonas campestris PV} PDB: 1yey_A 2hxu_A* 2hne_A | Back alignment and structure |
|---|
Probab=87.62 E-value=4.3 Score=39.80 Aligned_cols=117 Identities=15% Similarity=0.179 Sum_probs=78.4
Q ss_pred CHHHHHHHHHHHHHcCCcEEEEecCCCCCCchhHHhhhhcCCCCccccccccccccCccccccchhhHHHhhhccCccc-
Q 017718 134 DRNVVAQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLTLKNFQGLDLGKMDEANDSGLAAYVAGQIDRSL- 212 (367)
Q Consensus 134 d~~~~~~~l~ra~~~G~~ai~itvd~p~~g~r~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~- 212 (367)
+++.+.+.++++.+.||+++=++++... + .+.
T Consensus 198 ~~e~~~~~a~~~~~~Gf~~vKik~g~~~---~--------------------------------------------~d~e 230 (441)
T 2hxt_A 198 SDEKLVRLAKEAVADGFRTIKLKVGANV---Q--------------------------------------------DDIR 230 (441)
T ss_dssp CHHHHHHHHHHHHHTTCSEEEEECCSCH---H--------------------------------------------HHHH
T ss_pred CHHHHHHHHHHHHHcCCCEEEEccCCCH---H--------------------------------------------HHHH
Confidence 6777778888888999999987665210 0 000
Q ss_pred cHHHHHhhc--CCCEEEEec--CCHHHHH----HHHHcCCcEEEEcCCCCCCCCCccchHHHHHHHHHHhcCCCcEEEec
Q 017718 213 SWKWLQTIT--KLPILVKGV--LTAEDAR----IAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDG 284 (367)
Q Consensus 213 ~~~~l~~~~--~~Pv~vK~v--~~~~~a~----~~~~~G~d~i~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~~~via~G 284 (367)
..+.+|+.+ +++|.+..- .+.+++. .+.+.|++.|-- ...+..++.+.++++.+. .+||++++
T Consensus 231 ~v~avR~a~G~d~~l~vDan~~~~~~~a~~~~~~l~~~~i~~iEq--------P~~~~d~~~~~~l~~~~~-~iPIa~dE 301 (441)
T 2hxt_A 231 RCRLARAAIGPDIAMAVDANQRWDVGPAIDWMRQLAEFDIAWIEE--------PTSPDDVLGHAAIRQGIT-PVPVSTGE 301 (441)
T ss_dssp HHHHHHHHHCSSSEEEEECTTCCCHHHHHHHHHTTGGGCCSCEEC--------CSCTTCHHHHHHHHHHHT-TSCEEECT
T ss_pred HHHHHHHhcCCCCeEEEECCCCCCHHHHHHHHHHHHhcCCCeeeC--------CCCHHHHHHHHHHHhhCC-CCCEEEeC
Confidence 122566655 467776643 3555543 345566665531 111235677788877652 59999999
Q ss_pred CCCCHHHHHHHHHcC-CCEEEec
Q 017718 285 GVRRGTDVFKALALG-ASGIFIG 306 (367)
Q Consensus 285 GI~~~~dv~kal~lG-Ad~V~ig 306 (367)
.+.+..++.+.+..| +|.|++-
T Consensus 302 ~~~~~~~~~~~i~~~~~d~v~ik 324 (441)
T 2hxt_A 302 HTQNRVVFKQLLQAGAVDLIQID 324 (441)
T ss_dssp TCCSHHHHHHHHHHTCCSEECCC
T ss_pred CcCCHHHHHHHHHcCCCCEEEeC
Confidence 999999999999987 7999884
|
| >3r4e_A Mandelate racemase/muconate lactonizing enzyme; enolase fold, mannonate dehydratase, D-mannonate, lyase; HET: CS2; 1.65A {Novosphingobium aromaticivorans} PDB: 2qjj_A 2qjn_A* 2qjm_A* | Back alignment and structure |
|---|
Probab=87.54 E-value=4.6 Score=39.37 Aligned_cols=152 Identities=13% Similarity=-0.016 Sum_probs=87.0
Q ss_pred cCCHHHHHHHHHHHHHcCCcEEEEecCCCCCCchhHHhhhhcCCCCccccccccccccCccccccchhhHHHhhhccCcc
Q 017718 132 YKDRNVVAQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLTLKNFQGLDLGKMDEANDSGLAAYVAGQIDRS 211 (367)
Q Consensus 132 ~~d~~~~~~~l~ra~~~G~~ai~itvd~p~~g~r~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~ 211 (367)
..+++.+.+.++++.+.||+++=+.+++|..... ++..-. +... .......... ........ .+.+
T Consensus 141 ~~~~e~~~~~a~~~~~~Gf~~~K~k~G~~~~~~~-----~g~~~~-~~~~---~~~~~~~p~~-~~~~~~~~----~~~d 206 (418)
T 3r4e_A 141 GSDIAETVEAVGHYIDMGYKAIRAQTGVPGIKDA-----YGVGRG-KLYY---EPADASLPSV-TGWDTRKA----LNYV 206 (418)
T ss_dssp ESSHHHHHHHHHHHHHTTCSEEEEEECCTTC---------------------------CCCCE-EEECHHHH----HHHH
T ss_pred CCCHHHHHHHHHHHHHcCCCEEEEecCCcccccc-----cccccc-cccc---cccccccccc-ccccchhH----HHHH
Confidence 4678888888888888999999998887531000 000000 0000 0000000000 00000000 0111
Q ss_pred cc-HHHHHhhc--CCCEEEEec--CCHHH----HHHHHHcCCcEEEEcCCCCCCCCCccchHHHHHHHHHHhcCCCcEEE
Q 017718 212 LS-WKWLQTIT--KLPILVKGV--LTAED----ARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFL 282 (367)
Q Consensus 212 ~~-~~~l~~~~--~~Pv~vK~v--~~~~~----a~~~~~~G~d~i~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~~~via 282 (367)
+. .+.+|+.+ +++|.+..- .+.++ ++.+.+.|++.|-- ...+..++.+.++++.+ .+||++
T Consensus 207 ~~~v~avR~a~G~d~~l~vDaN~~~~~~~A~~~~~~L~~~~i~~iEq--------P~~~~d~~~~~~l~~~~--~iPIa~ 276 (418)
T 3r4e_A 207 PKLFEELRKTYGFDHHLLHDGHHRYTPQEAANLGKMLEPYQLFWLED--------CTPAENQEAFRLVRQHT--VTPLAV 276 (418)
T ss_dssp HHHHHHHHHHHCSSSEEEEECTTCSCHHHHHHHHHHHGGGCCSEEES--------CSCCSSGGGGHHHHHHC--CSCEEE
T ss_pred HHHHHHHHHHcCCCCeEEEeCCCCCCHHHHHHHHHHHHhhCCCEEEC--------CCCccCHHHHHHHHhcC--CCCEEE
Confidence 11 23788876 578888754 35555 45667788887742 01122455677777766 799999
Q ss_pred ecCCCCHHHHHHHHHcC-CCEEEech
Q 017718 283 DGGVRRGTDVFKALALG-ASGIFIGR 307 (367)
Q Consensus 283 ~GGI~~~~dv~kal~lG-Ad~V~ig~ 307 (367)
++.+.+..|+.+++..| +|.|++--
T Consensus 277 dE~~~~~~~~~~~l~~~a~d~v~~k~ 302 (418)
T 3r4e_A 277 GEIFNTIWDAKDLIQNQLIDYIRATV 302 (418)
T ss_dssp CTTCCSGGGTHHHHHTTCCSEECCCT
T ss_pred cCCcCCHHHHHHHHHcCCCCeEecCc
Confidence 99999999999999987 89998864
|
| >1zlp_A PSR132, petal death protein; TIM-barrel, helix swapping,2-ethyl-3-methylmalate lyase, 2-P methylmalate lyase, lyase/PEP mutase superfamily; 2.70A {Dianthus caryophyllus} | Back alignment and structure |
|---|
Probab=87.34 E-value=2.6 Score=39.84 Aligned_cols=68 Identities=25% Similarity=0.237 Sum_probs=49.4
Q ss_pred HHHHHHHHcCCcEEEEcCCCCCCCCCccchHHHHHHHHHHhcCCCcEEEe---cCCCCHHHHHHHHHcCCCEEEechHHH
Q 017718 234 EDARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLD---GGVRRGTDVFKALALGASGIFIGRPVV 310 (367)
Q Consensus 234 ~~a~~~~~~G~d~i~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~~~via~---GGI~~~~dv~kal~lGAd~V~ig~~~l 310 (367)
+.++...++|||.|.+- ++++.+.+.++.+.+ ++|+.++ +|-...-++.+.-.+|.+.|.++...+
T Consensus 193 ~Ra~Ay~eAGAd~i~~e---------~~~~~e~~~~i~~~l--~~P~lan~~~~g~~~~~~~~eL~~lGv~~v~~~~~~~ 261 (318)
T 1zlp_A 193 RRANLYKEAGADATFVE---------APANVDELKEVSAKT--KGLRIANMIEGGKTPLHTPEEFKEMGFHLIAHSLTAV 261 (318)
T ss_dssp HHHHHHHHTTCSEEEEC---------CCCSHHHHHHHHHHS--CSEEEEEECTTSSSCCCCHHHHHHHTCCEEEECSHHH
T ss_pred HHHHHHHHcCCCEEEEc---------CCCCHHHHHHHHHhc--CCCEEEEeccCCCCCCCCHHHHHHcCCeEEEEchHHH
Confidence 45788999999999982 245677888888888 6998653 432222334556679999999998777
Q ss_pred HH
Q 017718 311 YS 312 (367)
Q Consensus 311 ~~ 312 (367)
.+
T Consensus 262 ra 263 (318)
T 1zlp_A 262 YA 263 (318)
T ss_dssp HH
T ss_pred HH
Confidence 64
|
| >1vhn_A Putative flavin oxidoreducatase; structural genomics, unknown function; HET: FMN; 1.59A {Thermotoga maritima} SCOP: c.1.4.1 | Back alignment and structure |
|---|
Probab=87.28 E-value=3.3 Score=38.78 Aligned_cols=32 Identities=38% Similarity=0.730 Sum_probs=26.3
Q ss_pred HHHhhcCCCEEEEec-CCHHHHHHHHH-cCCcEEEE
Q 017718 216 WLQTITKLPILVKGV-LTAEDARIAVQ-AGAAGIIV 249 (367)
Q Consensus 216 ~l~~~~~~Pv~vK~v-~~~~~a~~~~~-~G~d~i~v 249 (367)
.+++ ++||+.-+- .+.+++..+.+ .|+|+|.+
T Consensus 179 ~i~~--~ipVi~~GgI~s~~da~~~l~~~gad~V~i 212 (318)
T 1vhn_A 179 VLEK--RIPTFVSGDIFTPEDAKRALEESGCDGLLV 212 (318)
T ss_dssp GSCC--SSCEEEESSCCSHHHHHHHHHHHCCSEEEE
T ss_pred HHHc--CCeEEEECCcCCHHHHHHHHHcCCCCEEEE
Confidence 4444 899988765 68999999888 79999988
|
| >2o56_A Putative mandelate racemase; dehydratase, structural genomics, protein structure initiati 2; 2.00A {Salmonella typhimurium} | Back alignment and structure |
|---|
Probab=87.27 E-value=6.2 Score=38.11 Aligned_cols=81 Identities=14% Similarity=0.071 Sum_probs=60.0
Q ss_pred HHHhhc--CCCEEEEec--CCHHH----HHHHHHcCCcEEEEcCCCCCCCCCccchHHHHHHHHHHhcCCCcEEEecCCC
Q 017718 216 WLQTIT--KLPILVKGV--LTAED----ARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVR 287 (367)
Q Consensus 216 ~l~~~~--~~Pv~vK~v--~~~~~----a~~~~~~G~d~i~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~~~via~GGI~ 287 (367)
.+|+.. +++|.+..- .+.++ ++.+.+.|++.|-- ...+..++.+.++++.+ ++||++++.+.
T Consensus 207 avR~a~G~d~~l~vDan~~~~~~~a~~~~~~l~~~~i~~iE~--------P~~~~~~~~~~~l~~~~--~iPIa~dE~~~ 276 (407)
T 2o56_A 207 AIRDAVGPDVDIIAEMHAFTDTTSAIQFGRMIEELGIFYYEE--------PVMPLNPAQMKQVADKV--NIPLAAGERIY 276 (407)
T ss_dssp HHHHHHCTTSEEEEECTTCSCHHHHHHHHHHHGGGCCSCEEC--------SSCSSSHHHHHHHHHHC--CSCEEECTTCC
T ss_pred HHHHhcCCCCEEEEECCCCCCHHHHHHHHHHHHhcCCCEEeC--------CCChhhHHHHHHHHHhC--CCCEEeCCCcC
Confidence 677766 578888753 35555 45566778776541 11234677888888877 79999999999
Q ss_pred CHHHHHHHHHcC-CCEEEec
Q 017718 288 RGTDVFKALALG-ASGIFIG 306 (367)
Q Consensus 288 ~~~dv~kal~lG-Ad~V~ig 306 (367)
+..++.+++..| +|.|++-
T Consensus 277 ~~~~~~~~i~~~~~d~v~ik 296 (407)
T 2o56_A 277 WRWGYRPFLENGSLSVIQPD 296 (407)
T ss_dssp HHHHHHHHHHTTCCSEECCC
T ss_pred CHHHHHHHHHcCCCCEEecC
Confidence 999999999987 8999883
|
| >3dg3_A Muconate cycloisomerase; muconate lactonizing enzyme, muconolactone binding; 1.60A {Mycobacterium smegmatis} PDB: 3dg6_A* 3dg7_A* | Back alignment and structure |
|---|
Probab=87.19 E-value=8.1 Score=36.80 Aligned_cols=85 Identities=18% Similarity=0.175 Sum_probs=58.6
Q ss_pred HHHhhc--CCCEEEEec--CCHHHH----HHHHHcCCcEEEEcCCCCCCCCCccchHHHHHHHHHHhcCCCcEEEecCCC
Q 017718 216 WLQTIT--KLPILVKGV--LTAEDA----RIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVR 287 (367)
Q Consensus 216 ~l~~~~--~~Pv~vK~v--~~~~~a----~~~~~~G~d~i~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~~~via~GGI~ 287 (367)
.+|+.+ +.++.+..- .+.++| +.+.+.|++.|- + ...+..++.+.++++.. .+||++++.+.
T Consensus 177 avR~a~g~~~~l~vDan~~~~~~~a~~~~~~l~~~~i~~iE-------q-P~~~~d~~~~~~l~~~~--~iPIa~dE~~~ 246 (367)
T 3dg3_A 177 ALRERFGDAIELYVDGNRGWSAAESLRAMREMADLDLLFAE-------E-LCPADDVLSRRRLVGQL--DMPFIADESVP 246 (367)
T ss_dssp HHHHHHGGGSEEEEECTTCSCHHHHHHHHHHTTTSCCSCEE-------S-CSCTTSHHHHHHHHHHC--SSCEEECTTCS
T ss_pred HHHHHhCCCCEEEEECCCCCCHHHHHHHHHHHHHhCCCEEE-------C-CCCcccHHHHHHHHHhC--CCCEEecCCcC
Confidence 666665 467777643 355554 344555666553 1 11123567778887766 79999999999
Q ss_pred CHHHHHHHHHcC-CCEEEechHHH
Q 017718 288 RGTDVFKALALG-ASGIFIGRPVV 310 (367)
Q Consensus 288 ~~~dv~kal~lG-Ad~V~ig~~~l 310 (367)
+..|+.+++..| +|.|++--..+
T Consensus 247 ~~~~~~~~i~~~~~d~v~~k~~~~ 270 (367)
T 3dg3_A 247 TPADVTREVLGGSATAISIKTART 270 (367)
T ss_dssp SHHHHHHHHHHTSCSEEEECHHHH
T ss_pred CHHHHHHHHHcCCCCEEEeehhhh
Confidence 999999999987 89999965443
|
| >1zlp_A PSR132, petal death protein; TIM-barrel, helix swapping,2-ethyl-3-methylmalate lyase, 2-P methylmalate lyase, lyase/PEP mutase superfamily; 2.70A {Dianthus caryophyllus} | Back alignment and structure |
|---|
Probab=87.13 E-value=5.6 Score=37.48 Aligned_cols=83 Identities=25% Similarity=0.340 Sum_probs=57.9
Q ss_pred CCCEEEEecCCHHHHHHHHHcCCcEEEEcCCC-C-C---CCCCccchHH----HHHHHHHHhcCCCcEEEec--CCCCHH
Q 017718 222 KLPILVKGVLTAEDARIAVQAGAAGIIVSNHG-A-R---QLDYVPATIM----ALEEVVKATQGRIPVFLDG--GVRRGT 290 (367)
Q Consensus 222 ~~Pv~vK~v~~~~~a~~~~~~G~d~i~vs~~g-g-~---~~~~~~~~~~----~l~~i~~~~~~~~~via~G--GI~~~~ 290 (367)
+-|+++=++-+.-.|+.+.++|+|+|.+++.+ + . ..|.++-+++ .+..|.+.++ ++||++|. |..++.
T Consensus 38 ~~~i~~~~ayD~~sA~i~e~aGfdai~vs~~~~a~~~lG~pD~~~vt~~em~~~~~~I~r~~~-~~PviaD~d~Gyg~~~ 116 (318)
T 1zlp_A 38 HGSVLMPGVQDALSAAVVEKTGFHAAFVSGYSVSAAMLGLPDFGLLTTTEVVEATRRITAAAP-NLCVVVDGDTGGGGPL 116 (318)
T ss_dssp SSSEEEEEECSHHHHHHHHHTTCSEEEECHHHHHHHHHCCCSSSCSCHHHHHHHHHHHHHHSS-SSEEEEECTTCSSSHH
T ss_pred CCcEEEecCCCHHHHHHHHHcCCCEEEECcHHHhhHhcCCCCCCCCCHHHHHHHHHHHHhhcc-CCCEEEeCCCCCCCHH
Confidence 56898888899999999999999999998631 1 0 1344544443 3344444442 69999976 444666
Q ss_pred HHH----HHHHcCCCEEEe
Q 017718 291 DVF----KALALGASGIFI 305 (367)
Q Consensus 291 dv~----kal~lGAd~V~i 305 (367)
++. +.+..||.+|.|
T Consensus 117 ~v~~tv~~l~~aGaagv~i 135 (318)
T 1zlp_A 117 NVQRFIRELISAGAKGVFL 135 (318)
T ss_dssp HHHHHHHHHHHTTCCEEEE
T ss_pred HHHHHHHHHHHcCCcEEEE
Confidence 554 455689999987
|
| >1vyr_A Pentaerythritol tetranitrate reductase; oxidoreductase, flavoenzyme, explosive degradation, steroid binding; HET: FMN TNF; 0.9A {Enterobacter cloacae} SCOP: c.1.4.1 PDB: 1gvq_A* 1gvr_A* 1gvs_A* 1h50_A* 1h51_A* 1h60_A* 1h61_A* 1h62_A* 1h63_A* 1gvo_A* 2aba_A* 3f03_K* 3kft_A* 3p7y_A* 3p80_A* 3p81_A* 3p62_A* 3p8i_A* 2abb_A* 3p67_A* ... | Back alignment and structure |
|---|
Probab=87.13 E-value=4.8 Score=38.58 Aligned_cols=34 Identities=21% Similarity=0.161 Sum_probs=30.9
Q ss_pred HHHhhcCCCEEEEecCCHHHHHHHHHcC-CcEEEE
Q 017718 216 WLQTITKLPILVKGVLTAEDARIAVQAG-AAGIIV 249 (367)
Q Consensus 216 ~l~~~~~~Pv~vK~v~~~~~a~~~~~~G-~d~i~v 249 (367)
.+|+.+++||+.-+..+.++++.+++.| +|+|.+
T Consensus 288 ~v~~~~~iPvi~~Ggit~~~a~~~l~~g~aD~V~~ 322 (364)
T 1vyr_A 288 KVRERFHGVIIGAGAYTAEKAEDLIGKGLIDAVAF 322 (364)
T ss_dssp HHHHHCCSEEEEESSCCHHHHHHHHHTTSCSEEEE
T ss_pred HHHHHCCCCEEEECCcCHHHHHHHHHCCCccEEEE
Confidence 7888899999988877999999999998 999988
|
| >3sbf_A Mandelate racemase / muconate lactonizing enzyme; enolase fold, acid sugar dehydratase, D-araninonate, isomera; HET: EPE D8T; 1.50A {Vibrionales bacterium swat-3} PDB: 3r25_A 3dfh_A 4gis_A 4gir_A 4ggh_A 3gy1_A | Back alignment and structure |
|---|
Probab=87.11 E-value=5.4 Score=38.59 Aligned_cols=143 Identities=16% Similarity=0.017 Sum_probs=85.0
Q ss_pred cCCHHHHHHHHHHHHHcCCcEEEEecCCCCCCchhHHhhhhcCCCCccccccccccccCccccccchhhHHHhhhccCcc
Q 017718 132 YKDRNVVAQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLTLKNFQGLDLGKMDEANDSGLAAYVAGQIDRS 211 (367)
Q Consensus 132 ~~d~~~~~~~l~ra~~~G~~ai~itvd~p~~g~r~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~ 211 (367)
..+++.+.+.++++.+.||+++=+.++.+... .+.. .-|.+.. ....-...+.+ +.+
T Consensus 131 ~~~~e~~~~~a~~~~~~G~~~~K~KvG~~~~~---~~~~---~~~~~~~-------------~g~~~~~~~~~----~~d 187 (401)
T 3sbf_A 131 SDTMEGIYDLVEGFLEKGYKHIRCQLGFYGGV---PTDL---HTTQNPT-------------EGSYYDQDQYM----DNT 187 (401)
T ss_dssp ESSHHHHHHHHHHHHHTTCCEEEEEESCCCSC---GGGS---CCCSSCC-------------SSEECCHHHHH----HHH
T ss_pred CCCHHHHHHHHHHHHHcCCCEEEEeeccCCcc---cccc---ccccccc-------------ccccccchHHH----HHH
Confidence 46788888888888889999998888753210 0000 0000000 00000000000 011
Q ss_pred cc-HHHHHhhc--CCCEEEEec--CCHHHH----HHHHHcCCcEEEEcCCCCCCCCCccchHHHHHHHHHHhcCCCcEEE
Q 017718 212 LS-WKWLQTIT--KLPILVKGV--LTAEDA----RIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFL 282 (367)
Q Consensus 212 ~~-~~~l~~~~--~~Pv~vK~v--~~~~~a----~~~~~~G~d~i~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~~~via 282 (367)
+. .+.+|+.+ +++|.+..- .+.++| +.+.+.|++.|-- ...+..++.+.++++.+ .+||++
T Consensus 188 ~~~v~avR~a~G~d~~l~vDan~~~~~~~A~~~~~~L~~~~i~~iEq--------P~~~~~~~~~~~l~~~~--~iPIa~ 257 (401)
T 3sbf_A 188 LTMFKSLREKYGNQFHILHDVHERLFPNQAIQFAKEVEQYKPYFIED--------ILPPNQTEWLDNIRSQS--SVSLGL 257 (401)
T ss_dssp HHHHHHHHHHHTTSSEEEEECTTCSCHHHHHHHHHHHGGGCCSCEEC--------SSCTTCGGGHHHHHTTC--CCCEEE
T ss_pred HHHHHHHHHHcCCCCEEEEECCCCCCHHHHHHHHHHHHhcCCCEEEC--------CCChhHHHHHHHHHhhC--CCCEEe
Confidence 11 23778776 578888764 355554 5566778777642 01122455667776655 799999
Q ss_pred ecCCCCHHHHHHHHHcC-CCEEEech
Q 017718 283 DGGVRRGTDVFKALALG-ASGIFIGR 307 (367)
Q Consensus 283 ~GGI~~~~dv~kal~lG-Ad~V~ig~ 307 (367)
++.+.+..|+.+++..| +|.|++--
T Consensus 258 dE~~~~~~~~~~~i~~~~~d~v~~k~ 283 (401)
T 3sbf_A 258 GELFNNPEEWKSLIANRRIDFIRCHV 283 (401)
T ss_dssp CTTCCSHHHHHHHHHTTCCSEECCCG
T ss_pred CCccCCHHHHHHHHhcCCCCEEecCc
Confidence 99999999999999987 79998864
|
| >1xg4_A Probable methylisocitrate lyase; 2-methylisocitrate lyase/inhibitor complex, isocitrate lyase superfamily; HET: ICT; 1.60A {Escherichia coli} PDB: 1xg3_A* 1mum_A 1oqf_A 1ujq_A 1o5q_A | Back alignment and structure |
|---|
Probab=87.08 E-value=2.2 Score=39.84 Aligned_cols=82 Identities=26% Similarity=0.432 Sum_probs=57.6
Q ss_pred CCCEEEEecCCHHHHHHHHHcCCcEEEEcCCC-CC----CCCCccchHH----HHHHHHHHhcCCCcEEEec--CCC-CH
Q 017718 222 KLPILVKGVLTAEDARIAVQAGAAGIIVSNHG-AR----QLDYVPATIM----ALEEVVKATQGRIPVFLDG--GVR-RG 289 (367)
Q Consensus 222 ~~Pv~vK~v~~~~~a~~~~~~G~d~i~vs~~g-g~----~~~~~~~~~~----~l~~i~~~~~~~~~via~G--GI~-~~ 289 (367)
+-|+++=++-+.-.|+.+.++|+|+|.+++.+ +. ..|.++-+++ .+..|.+.+ ++||++|. |.. ++
T Consensus 16 ~~~i~~~~a~D~~sA~~~~~aG~~ai~vs~~~~a~~~~G~pD~~~vt~~em~~~~~~I~~~~--~~PviaD~d~Gyg~~~ 93 (295)
T 1xg4_A 16 ENPLQIVGTINANHALLAQRAGYQAIYLSGGGVAAGSLGLPDLGISTLDDVLTDIRRITDVC--SLPLLVDADIGFGSSA 93 (295)
T ss_dssp SSSEEEEECSSHHHHHHHHHTTCSCEEECHHHHHHTTTCCCSSSCSCHHHHHHHHHHHHHHC--CSCEEEECTTCSSSSH
T ss_pred CCcEEEecCcCHHHHHHHHHcCCCEEEECchHhhhhhcCCCCCCCCCHHHHHHHHHHHHhhC--CCCEEecCCcccCCCH
Confidence 56898888899999999999999999998642 11 1344444443 344455544 68999987 544 56
Q ss_pred HHHH----HHHHcCCCEEEe
Q 017718 290 TDVF----KALALGASGIFI 305 (367)
Q Consensus 290 ~dv~----kal~lGAd~V~i 305 (367)
.++. +.+..||++|.|
T Consensus 94 ~~~~~~v~~l~~aGa~gv~i 113 (295)
T 1xg4_A 94 FNVARTVKSMIKAGAAGLHI 113 (295)
T ss_dssp HHHHHHHHHHHHHTCSEEEE
T ss_pred HHHHHHHHHHHHcCCeEEEE
Confidence 6554 355689999987
|
| >1w3i_A EDA, 2-keto-3-deoxy gluconate aldolase; archaeal metabolism, pyruvate; 1.7A {Sulfolobus solfataricus} SCOP: c.1.10.1 PDB: 1w37_A 1w3n_A* 1w3t_A* 2yda_A* | Back alignment and structure |
|---|
Probab=87.05 E-value=18 Score=33.23 Aligned_cols=175 Identities=15% Similarity=0.116 Sum_probs=95.5
Q ss_pred ceEeCcccchhccCChhhHHHHHHHHHcCCceee--cC---CCCCCHHHHH-------hhCCCceEEEEeecCCHHHHHH
Q 017718 73 PIMIAPTAMQKMAHPEGEYATARAASAAGTIMTL--SS---WSTSSVEEVA-------STGPGIRFFQLYVYKDRNVVAQ 140 (367)
Q Consensus 73 Pi~iAPm~~~~l~~~~~e~~~a~aa~~~G~~~~v--s~---~~~~~~e~i~-------~~~~~~~~~QLy~~~d~~~~~~ 140 (367)
|.++.|+.-.+-.+.+.-..+.+-.-+.|+...+ || ..+.+.||-. +...+ .+...- ..+-+...+
T Consensus 5 ~a~vTPf~~dg~iD~~~l~~lv~~li~~Gv~gl~~~GttGE~~~Ls~eEr~~v~~~~~~~~~g-viaGvg-~~~t~~ai~ 82 (293)
T 1w3i_A 5 TPIITPFTKDNRIDKEKLKIHAENLIRKGIDKLFVNGTTGLGPSLSPEEKLENLKAVYDVTNK-IIFQVG-GLNLDDAIR 82 (293)
T ss_dssp EECCCCBCTTSSBCHHHHHHHHHHHHHTTCCEEEESSTTTTGGGSCHHHHHHHHHHHHTTCSC-EEEECC-CSCHHHHHH
T ss_pred EEeeCCCCCCCCcCHHHHHHHHHHHHHcCCCEEEECccccChhhCCHHHHHHHHHHHHHHcCC-EEEecC-CCCHHHHHH
Confidence 4456666432223333334566666678876433 33 3456666532 22223 444443 345666778
Q ss_pred HHHHHHHcCCcEEEEecCCCCCCchhHHhhhhcCCCCcccc-ccccccccCccccccchhhHHHhhhccCccccHHHHHh
Q 017718 141 LVRRAERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLTL-KNFQGLDLGKMDEANDSGLAAYVAGQIDRSLSWKWLQT 219 (367)
Q Consensus 141 ~l~ra~~~G~~ai~itvd~p~~g~r~~~~~~~~~~p~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~l~~ 219 (367)
+.+.|+++|++++.+. .|.. .. .+ ..++.+ .++.+.+
T Consensus 83 la~~A~~~Gadavlv~--~P~y-----------------~~~~s-------------~~~l~~----------~f~~va~ 120 (293)
T 1w3i_A 83 LAKLSKDFDIVGIASY--APYY-----------------YPRMS-------------EKHLVK----------YFKTLCE 120 (293)
T ss_dssp HHHHGGGSCCSEEEEE--CCCS-----------------CSSCC-------------HHHHHH----------HHHHHHH
T ss_pred HHHHHHhcCCCEEEEc--CCCC-----------------CCCCC-------------HHHHHH----------HHHHHHh
Confidence 8899999999999874 2331 00 00 001111 2236667
Q ss_pred hcCCCEEEEec-------CCHHHHHHHHHcCCcEEEEcCCCCCCCCCccchHHHHHHHHHHhcCCCcEEEecCCCCHHHH
Q 017718 220 ITKLPILVKGV-------LTAEDARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDV 292 (367)
Q Consensus 220 ~~~~Pv~vK~v-------~~~~~a~~~~~~G~d~i~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~~~via~GGI~~~~dv 292 (367)
.+++||++=.+ .+++...+ --.+-+|--+. ..+..+.++.+ .++++.|+ +|- ..-+
T Consensus 121 a~~lPiilYn~P~~tg~~l~~~~~~~--~pnIvgiKds~----------gd~~~~~~~~~-~~~~f~v~-~G~---d~~~ 183 (293)
T 1w3i_A 121 VSPHPVYLYNYPTATGKDIDAKVAKE--IGCFTGVKDTI----------ENIIHTLDYKR-LNPNMLVY-SGS---DMLI 183 (293)
T ss_dssp HCSSCEEEEECHHHHSCCCCHHHHHH--HCCEEEEEECC----------SCHHHHHHHHH-HCTTSEEE-ECC---STTH
T ss_pred hCCCCEEEEECchhhCcCCCHHHHHh--cCCEEEEEeCC----------CCHHHHHHHHh-cCCCEEEE-Ecc---HHHH
Confidence 78999998775 45666555 12222332211 12444455555 55566654 452 2346
Q ss_pred HHHHHcCCCEEEechH
Q 017718 293 FKALALGASGIFIGRP 308 (367)
Q Consensus 293 ~kal~lGAd~V~ig~~ 308 (367)
+.++.+||+++.-+..
T Consensus 184 ~~~l~~G~~G~is~~a 199 (293)
T 1w3i_A 184 ATVASTGLDGNVAAGS 199 (293)
T ss_dssp HHHHHTTCCEEECGGG
T ss_pred HHHHHcCCCEEEeCHH
Confidence 7788999999998874
|
| >3ngj_A Deoxyribose-phosphate aldolase; lyase, structural genomics, structural genomics center for infectious disease, ssgcid; 1.70A {Entamoeba histolytica} | Back alignment and structure |
|---|
Probab=87.02 E-value=6.4 Score=35.54 Aligned_cols=75 Identities=17% Similarity=0.163 Sum_probs=52.0
Q ss_pred HHHHHHHHcCCcEEEEc-CCCCCCCCCc-cchHHHHHHHHHHhcC-CCcEEEecCCCCHHHHHHH----HHcCCCEEEec
Q 017718 234 EDARIAVQAGAAGIIVS-NHGARQLDYV-PATIMALEEVVKATQG-RIPVFLDGGVRRGTDVFKA----LALGASGIFIG 306 (367)
Q Consensus 234 ~~a~~~~~~G~d~i~vs-~~gg~~~~~~-~~~~~~l~~i~~~~~~-~~~via~GGI~~~~dv~ka----l~lGAd~V~ig 306 (367)
.+++.+.+.|||.|.+. |-|. -.++. ..-.+-|.++++.+++ -++||..-|.-+.+.+.++ ..+|||+|=-.
T Consensus 99 ~Ea~~Ai~~GAdEIDmViNig~-lk~g~~~~v~~eI~~v~~a~~~~~lKVIlEt~~Lt~eei~~a~~ia~~aGADfVKTS 177 (239)
T 3ngj_A 99 YETKVAVEQGAEEVDMVINIGM-VKAKKYDDVEKDVKAVVDASGKALTKVIIECCYLTNEEKVEVCKRCVAAGAEYVKTS 177 (239)
T ss_dssp HHHHHHHHTTCSEEEEECCHHH-HHTTCHHHHHHHHHHHHHHHTTSEEEEECCGGGSCHHHHHHHHHHHHHHTCSEEECC
T ss_pred HHHHHHHHcCCCEEEEEeehHH-hccccHHHHHHHHHHHHHHhcCCceEEEEecCCCCHHHHHHHHHHHHHHCcCEEECC
Confidence 56888999999999974 3221 11111 1133446666666643 3788888888898999888 67899999988
Q ss_pred hHH
Q 017718 307 RPV 309 (367)
Q Consensus 307 ~~~ 309 (367)
+-|
T Consensus 178 TGf 180 (239)
T 3ngj_A 178 TGF 180 (239)
T ss_dssp CSS
T ss_pred CCC
Confidence 755
|
| >1yad_A Regulatory protein TENI; TIM barrel, transcription; 2.10A {Bacillus subtilis} PDB: 3qh2_A* | Back alignment and structure |
|---|
Probab=86.81 E-value=8 Score=33.75 Aligned_cols=35 Identities=31% Similarity=0.435 Sum_probs=29.9
Q ss_pred HHHhhcCCCEEEEecCCHHHHHHHHHcCCcEEEEc
Q 017718 216 WLQTITKLPILVKGVLTAEDARIAVQAGAAGIIVS 250 (367)
Q Consensus 216 ~l~~~~~~Pv~vK~v~~~~~a~~~~~~G~d~i~vs 250 (367)
++++..++||++-+..+.+++..+.++|+|++.++
T Consensus 158 ~~~~~~~~pvia~GGI~~~nv~~~~~~Ga~gv~vg 192 (221)
T 1yad_A 158 DIKQRISIPVIAIGGMTPDRLRDVKQAGADGIAVM 192 (221)
T ss_dssp HHHHHCCSCEEEESSCCGGGHHHHHHTTCSEEEES
T ss_pred HHHHhCCCCEEEECCCCHHHHHHHHHcCCCEEEEh
Confidence 55555689999988779999999999999999984
|
| >3kts_A Glycerol uptake operon antiterminator regulatory; structural genomics, PSI-2, protein structur initiative; HET: UNL; 2.75A {Listeria monocytogenes str} | Back alignment and structure |
|---|
Probab=86.75 E-value=0.54 Score=41.28 Aligned_cols=38 Identities=21% Similarity=0.417 Sum_probs=33.7
Q ss_pred HHHHhhcCCCEEEEec-CCHHHHHHHHHcCCcEEEEcCC
Q 017718 215 KWLQTITKLPILVKGV-LTAEDARIAVQAGAAGIIVSNH 252 (367)
Q Consensus 215 ~~l~~~~~~Pv~vK~v-~~~~~a~~~~~~G~d~i~vs~~ 252 (367)
+++++.+++||++.|- .+.|++..+.++||++|+.|+.
T Consensus 143 ~~i~~~~~~PiIaGGlI~~~edv~~al~aGA~aVsTs~~ 181 (192)
T 3kts_A 143 QKMTQKLHIPVIAGGLIETSEQVNQVIASGAIAVTTSNK 181 (192)
T ss_dssp HHHHHHHCCCEEEESSCCSHHHHHHHHTTTEEEEEECCG
T ss_pred HHHHHhcCCCEEEECCcCCHHHHHHHHHcCCeEEEeCCH
Confidence 4788889999999885 7899999999999999999873
|
| >3fs2_A 2-dehydro-3-deoxyphosphooctonate aldolase; ssgcid, bruciellla melitensis, DAHP synthetase I, cytoplasm, lipopolysaccharide biosynthesis; HET: PG4; 1.85A {Brucella melitensis} | Back alignment and structure |
|---|
Probab=86.66 E-value=1.4 Score=41.29 Aligned_cols=86 Identities=26% Similarity=0.322 Sum_probs=53.4
Q ss_pred hcCCCEEEEecC--CHHH----HHHHHHcCCcEEEEcCCCCCCCCCc--cchHHHHHHHHHHhcCCCcEEEe--------
Q 017718 220 ITKLPILVKGVL--TAED----ARIAVQAGAAGIIVSNHGARQLDYV--PATIMALEEVVKATQGRIPVFLD-------- 283 (367)
Q Consensus 220 ~~~~Pv~vK~v~--~~~~----a~~~~~~G~d~i~vs~~gg~~~~~~--~~~~~~l~~i~~~~~~~~~via~-------- 283 (367)
.+++||++|..+ ++++ ++.+.+.|-+-|++--.|- ..... ...+..++.+++ . .+||+.|
T Consensus 153 ~~gkPVilK~Gms~t~~ei~~ave~i~~~Gn~~iiL~erg~-~y~~~~~~vdl~~i~~lk~-~--~~PV~~D~sHsvq~p 228 (298)
T 3fs2_A 153 RTGRVVNVKKGQFLAPWDMKNVLAKITESGNPNVLATERGV-SFGYNTLVSDMRALPIMAG-L--GAPVIFDATHSVQQP 228 (298)
T ss_dssp HTTSEEEEECCTTCCGGGHHHHHHHHHTTTCCCEEEEECCE-ECSSSCEECCTTHHHHHHT-T--TSCEEEEHHHHTCCC
T ss_pred ccCCcEEEeCCCCCCHHHHHHHHHHHHHcCCCeEEEEECCC-CCCCCCCccCHHHHHHHHH-c--CCcEEEcCCCccccC
Confidence 468999999985 4433 5666778887777753332 21111 124556776665 5 7999995
Q ss_pred -------cCCCCH--HHHHHHHHcCCCEEEechHH
Q 017718 284 -------GGVRRG--TDVFKALALGASGIFIGRPV 309 (367)
Q Consensus 284 -------GGI~~~--~dv~kal~lGAd~V~ig~~~ 309 (367)
||-+.- .-...|.++|||+++|=+-+
T Consensus 229 ~~~~~~s~G~r~~v~~~a~AAvAlGAdGl~IE~H~ 263 (298)
T 3fs2_A 229 GGQGGSTGGQREFVETLARAAVAVGVAGFFIETHE 263 (298)
T ss_dssp C--------CGGGHHHHHHHHHHHCCSEEEEEEES
T ss_pred CcccCCCCCchhhHHHHHHHHHHcCCCEEEEEecC
Confidence 333222 22447888999999997643
|
| >1me8_A Inosine-5'-monophosphate dehydrogenase; alpha beta barrel, oxidoreductase; HET: RVP; 1.90A {Tritrichomonas foetus} SCOP: c.1.5.1 PDB: 1ak5_A* 1me7_A* 1me9_A* 1meh_A* 1mei_A* 1mew_A* 1pvn_A* 1lrt_A* | Back alignment and structure |
|---|
Probab=86.52 E-value=1.2 Score=44.75 Aligned_cols=70 Identities=19% Similarity=0.149 Sum_probs=50.5
Q ss_pred HHHHHHHHHcCCcEEEEcCCCCCCCCCccchHHHHHHHHHHhcCCCcEEEecCCCCHHHHHHHHHcCCCEEEech
Q 017718 233 AEDARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFIGR 307 (367)
Q Consensus 233 ~~~a~~~~~~G~d~i~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~~~via~GGI~~~~dv~kal~lGAd~V~ig~ 307 (367)
.+.++.+.++|++.+.+....|.. ...++.+..+++..++++||++ |+|.+.+++.++..+|||++.+|.
T Consensus 244 ~e~~~~l~e~gv~~l~Vd~~~g~~----~~~~~~i~~lk~~~~~~~~Vi~-G~V~t~~~a~~l~~aGad~I~Vg~ 313 (503)
T 1me8_A 244 RERVPALVEAGADVLCIDSSDGFS----EWQKITIGWIREKYGDKVKVGA-GNIVDGEGFRYLADAGADFIKIGI 313 (503)
T ss_dssp HHHHHHHHHHTCSEEEECCSCCCS----HHHHHHHHHHHHHHGGGSCEEE-EEECSHHHHHHHHHHTCSEEEECS
T ss_pred HHHHHHHHhhhccceEEecccCcc----cchhhHHHHHHHhCCCCceEee-ccccCHHHHHHHHHhCCCeEEecc
Confidence 455788889999999884322211 2245566666665532277774 899999999999999999998764
|
| >2ox4_A Putative mandelate racemase; enolase, dehydratase, structural genomics, protein structure initiative, PSI, nysgrc; 1.80A {Zymomonas mobilis} | Back alignment and structure |
|---|
Probab=86.45 E-value=5.2 Score=38.61 Aligned_cols=82 Identities=13% Similarity=-0.012 Sum_probs=59.2
Q ss_pred HHHhhc--CCCEEEEec--CCHHH----HHHHHHcCCcEEEEcCCCCCCCCCccchHHHHHHHHHHhcCCCcEEEecCCC
Q 017718 216 WLQTIT--KLPILVKGV--LTAED----ARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVR 287 (367)
Q Consensus 216 ~l~~~~--~~Pv~vK~v--~~~~~----a~~~~~~G~d~i~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~~~via~GGI~ 287 (367)
.+|+.. +++|.+..- .+.++ ++.+.+.|++.|-- ...+..++.+.++++.+ ++||++++.+.
T Consensus 201 avr~avG~d~~l~vDan~~~~~~~ai~~~~~l~~~~i~~iE~--------P~~~~d~~~~~~l~~~~--~iPIa~dE~~~ 270 (403)
T 2ox4_A 201 AIRNAVGPDVDIIVENHGHTDLVSAIQFAKAIEEFNIFFYEE--------INTPLNPRLLKEAKKKI--DIPLASGERIY 270 (403)
T ss_dssp HHHHHHCTTSEEEEECTTCSCHHHHHHHHHHHGGGCEEEEEC--------CSCTTSTHHHHHHHHTC--CSCEEECTTCC
T ss_pred HHHHHhCCCCeEEEECCCCCCHHHHHHHHHHHHhhCCCEEeC--------CCChhhHHHHHHHHHhC--CCCEEecCCcC
Confidence 677766 588888753 35555 44566677665531 11223567778887766 79999999999
Q ss_pred CHHHHHHHHHcC-CCEEEech
Q 017718 288 RGTDVFKALALG-ASGIFIGR 307 (367)
Q Consensus 288 ~~~dv~kal~lG-Ad~V~ig~ 307 (367)
+..++.+++..| +|.|++--
T Consensus 271 ~~~~~~~~i~~~~~d~v~ik~ 291 (403)
T 2ox4_A 271 SRWGFLPFLEDRSIDVIQPDL 291 (403)
T ss_dssp HHHHHHHHHHTTCCSEECCCH
T ss_pred CHHHHHHHHHcCCCCEEecCc
Confidence 999999999987 89998854
|
| >1ujp_A Tryptophan synthase alpha chain; riken structural genomics/P initiative, RSGI, structural genomics, lyase; HET: CIT; 1.34A {Thermus thermophilus} SCOP: c.1.2.4 PDB: 1wxj_A* | Back alignment and structure |
|---|
Probab=86.36 E-value=0.94 Score=41.83 Aligned_cols=34 Identities=29% Similarity=0.329 Sum_probs=29.1
Q ss_pred HHHHhhcCCCEEEEecC-CHHHHHHHHHcCCcEEEEc
Q 017718 215 KWLQTITKLPILVKGVL-TAEDARIAVQAGAAGIIVS 250 (367)
Q Consensus 215 ~~l~~~~~~Pv~vK~v~-~~~~a~~~~~~G~d~i~vs 250 (367)
+.+|+.+++||++-+.. ++++++.+ .|+|+++|.
T Consensus 195 ~~vr~~~~~Pv~vGfGI~t~e~a~~~--~~ADgVIVG 229 (271)
T 1ujp_A 195 RRIKARTALPVAVGFGVSGKATAAQA--AVADGVVVG 229 (271)
T ss_dssp HHHHTTCCSCEEEESCCCSHHHHHHH--TTSSEEEEC
T ss_pred HHHHhhcCCCEEEEcCCCCHHHHHHh--cCCCEEEEC
Confidence 48888889999998865 59999997 999999994
|
| >1sjd_A N-acylamino acid racemase; lyase, isomerase; HET: NPG; 1.87A {Amycolatopsis SP} SCOP: c.1.11.2 d.54.1.1 PDB: 1sja_A* 1sjb_A* 1sjc_A* | Back alignment and structure |
|---|
Probab=86.33 E-value=5.8 Score=37.69 Aligned_cols=116 Identities=16% Similarity=0.175 Sum_probs=74.4
Q ss_pred CCHHHHHHHHHHHHHcCCcEEEEecCCCCCCchhHHhhhhcCCCCccccccccccccCccccccchhhHHHhhhccCccc
Q 017718 133 KDRNVVAQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLTLKNFQGLDLGKMDEANDSGLAAYVAGQIDRSL 212 (367)
Q Consensus 133 ~d~~~~~~~l~ra~~~G~~ai~itvd~p~~g~r~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~ 212 (367)
.+.+.+.+.++++.+.||+++=+.++ | +. ++ +
T Consensus 140 ~~~~~~~~~a~~~~~~Gf~~vKik~~-~----~~-~~--------------------------------e---------- 171 (368)
T 1sjd_A 140 DTIPQLLDVVGGYLDEGYVRIKLKIE-P----GW-DV--------------------------------E---------- 171 (368)
T ss_dssp SCHHHHHHHHHHHHHHTCSEEEEECB-T----TB-SH--------------------------------H----------
T ss_pred CCHHHHHHHHHHHHHhCccEEEEecC-c----hh-HH--------------------------------H----------
Confidence 46777777888888899999877653 1 00 00 0
Q ss_pred cHHHHHhhc--CCCEEEEec--CC---HHHHHHHHHcCCcEEEEcCCCCCCCCCccchHHHHHHHHHHhcCCCcEEEecC
Q 017718 213 SWKWLQTIT--KLPILVKGV--LT---AEDARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGG 285 (367)
Q Consensus 213 ~~~~l~~~~--~~Pv~vK~v--~~---~~~a~~~~~~G~d~i~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~~~via~GG 285 (367)
..+.+|+.+ ++++.+..- .+ .+-++.+.+.|++.|-= . ..+..++.+.++++.+ ++||++++.
T Consensus 172 ~v~avr~~~g~~~~l~vDan~~~~~~~~~~~~~l~~~~i~~iE~-------P-~~~~~~~~~~~l~~~~--~ipIa~dE~ 241 (368)
T 1sjd_A 172 PVRAVRERFGDDVLLQVDANTAYTLGDAPQLARLDPFGLLLIEQ-------P-LEEEDVLGHAELARRI--QTPICLDES 241 (368)
T ss_dssp HHHHHHHHHCTTSEEEEECTTCCCGGGHHHHHTTGGGCCSEEEC-------C-SCTTCHHHHHHHHTTC--SSCEEESTT
T ss_pred HHHHHHHhcCCCceEEEeccCCCCHHHHHHHHHHHhcCCCeEeC-------C-CChhhHHHHHHHHHhC--CCCEEECCC
Confidence 012444444 355554422 12 33445556677776531 0 1123567777776655 799999999
Q ss_pred CCCHHHHHHHHHcC-CCEEEec
Q 017718 286 VRRGTDVFKALALG-ASGIFIG 306 (367)
Q Consensus 286 I~~~~dv~kal~lG-Ad~V~ig 306 (367)
+.+..++.+++..| +|.|++=
T Consensus 242 ~~~~~~~~~~i~~~~~d~v~ik 263 (368)
T 1sjd_A 242 IVSARAAADAIKLGAVQIVNIK 263 (368)
T ss_dssp CCSHHHHHHHHHTTCCSEEEEC
T ss_pred cCCHHHHHHHHHcCCCCEEEec
Confidence 99999999999987 7999983
|
| >1w3i_A EDA, 2-keto-3-deoxy gluconate aldolase; archaeal metabolism, pyruvate; 1.7A {Sulfolobus solfataricus} SCOP: c.1.10.1 PDB: 1w37_A 1w3n_A* 1w3t_A* 2yda_A* | Back alignment and structure |
|---|
Probab=86.32 E-value=2.1 Score=39.72 Aligned_cols=84 Identities=19% Similarity=0.286 Sum_probs=47.7
Q ss_pred HHHHHHcCCcEEEEcCCCCCCCCCccch---HHHHHHHHHHhcCCCcEEE-ecCCCCHHHHHHHH----HcCCCEEEech
Q 017718 236 ARIAVQAGAAGIIVSNHGARQLDYVPAT---IMALEEVVKATQGRIPVFL-DGGVRRGTDVFKAL----ALGASGIFIGR 307 (367)
Q Consensus 236 a~~~~~~G~d~i~vs~~gg~~~~~~~~~---~~~l~~i~~~~~~~~~via-~GGI~~~~dv~kal----~lGAd~V~ig~ 307 (367)
++.+.+.|+|+|++.++.|-. ...+. .+++..+++.+.+ ||+ .|+..+ .++++.. .+|||++++-.
T Consensus 26 v~~li~~Gv~gl~~~GttGE~--~~Ls~eEr~~v~~~~~~~~~g---viaGvg~~~t-~~ai~la~~A~~~Gadavlv~~ 99 (293)
T 1w3i_A 26 AENLIRKGIDKLFVNGTTGLG--PSLSPEEKLENLKAVYDVTNK---IIFQVGGLNL-DDAIRLAKLSKDFDIVGIASYA 99 (293)
T ss_dssp HHHHHHTTCCEEEESSTTTTG--GGSCHHHHHHHHHHHHTTCSC---EEEECCCSCH-HHHHHHHHHGGGSCCSEEEEEC
T ss_pred HHHHHHcCCCEEEECccccCh--hhCCHHHHHHHHHHHHHHcCC---EEEecCCCCH-HHHHHHHHHHHhcCCCEEEEcC
Confidence 466788999999996654421 11222 2334444443433 554 454444 4444322 26999999999
Q ss_pred HHHHH-hhccChHHHHHHHHHH
Q 017718 308 PVVYS-LAAEGEKGVRRVLEML 328 (367)
Q Consensus 308 ~~l~~-l~~~G~~~v~~~i~~l 328 (367)
|+++. . .++++.++++.+
T Consensus 100 P~y~~~~---s~~~l~~~f~~v 118 (293)
T 1w3i_A 100 PYYYPRM---SEKHLVKYFKTL 118 (293)
T ss_dssp CCSCSSC---CHHHHHHHHHHH
T ss_pred CCCCCCC---CHHHHHHHHHHH
Confidence 98763 2 345555554444
|
| >3ddm_A Putative mandelate racemase/muconate lactonizing enzyme; structural genomics, NYSGXRC, target 9284B, enolase family, PSI-2; 2.60A {Bordetella bronchiseptica} | Back alignment and structure |
|---|
Probab=86.31 E-value=4.6 Score=39.01 Aligned_cols=81 Identities=11% Similarity=0.025 Sum_probs=59.0
Q ss_pred HHHhhc--CCCEEEEec--CCHHH----HHHHHHcCCcEEEEcCCCCCCCCCccch-HHHHHHHHHHhcCCCcEEEecCC
Q 017718 216 WLQTIT--KLPILVKGV--LTAED----ARIAVQAGAAGIIVSNHGARQLDYVPAT-IMALEEVVKATQGRIPVFLDGGV 286 (367)
Q Consensus 216 ~l~~~~--~~Pv~vK~v--~~~~~----a~~~~~~G~d~i~vs~~gg~~~~~~~~~-~~~l~~i~~~~~~~~~via~GGI 286 (367)
.+|+.+ ++++.+..- -+.++ ++.+.+.|++.|-= ...+.. ++.+.++++.. .+||++++.+
T Consensus 191 avR~a~g~~~~l~vDaN~~~~~~~A~~~~~~L~~~~i~~iEe--------P~~~~d~~~~~~~l~~~~--~iPIa~dE~~ 260 (392)
T 3ddm_A 191 HVRELLGAATPLMADANQGWDLPRARQMAQRLGPAQLDWLEE--------PLRADRPAAEWAELAQAA--PMPLAGGENI 260 (392)
T ss_dssp HHHHHHCSSSCEEEECTTCCCHHHHHHHHHHHGGGCCSEEEC--------CSCTTSCHHHHHHHHHHC--SSCEEECTTC
T ss_pred HHHHhcCCCceEEEeCCCCCCHHHHHHHHHHHHHhCCCEEEC--------CCCccchHHHHHHHHHhc--CCCEEeCCCC
Confidence 677775 578888753 34555 45566778877641 111224 77788888776 7999999999
Q ss_pred CCHHHHHHHHHcC-CCEEEec
Q 017718 287 RRGTDVFKALALG-ASGIFIG 306 (367)
Q Consensus 287 ~~~~dv~kal~lG-Ad~V~ig 306 (367)
.+..|+.+++..| +|.|++-
T Consensus 261 ~~~~~~~~~i~~~a~d~v~~k 281 (392)
T 3ddm_A 261 AGVAAFETALAARSLRVMQPD 281 (392)
T ss_dssp CSHHHHHHHHHHTCEEEECCC
T ss_pred CCHHHHHHHHHcCCCCEEEeC
Confidence 9999999999977 7888884
|
| >3sr7_A Isopentenyl-diphosphate delta-isomerase; isopentenyl pyrophosphate isomerase, TIM-barrel; 2.04A {Streptococcus mutans} | Back alignment and structure |
|---|
Probab=86.26 E-value=1.5 Score=42.31 Aligned_cols=82 Identities=13% Similarity=0.039 Sum_probs=53.7
Q ss_pred CCCEEEEec--CCHHHHHH-HHHcCCcEEEEcCCCCC---CC--CCccch-HHHHHHHHHHhcCCCcEEEecCC---CCH
Q 017718 222 KLPILVKGV--LTAEDARI-AVQAGAAGIIVSNHGAR---QL--DYVPAT-IMALEEVVKATQGRIPVFLDGGV---RRG 289 (367)
Q Consensus 222 ~~Pv~vK~v--~~~~~a~~-~~~~G~d~i~vs~~gg~---~~--~~~~~~-~~~l~~i~~~~~~~~~via~GGI---~~~ 289 (367)
+.|++.=+. .+.+++.+ +...|+|++.+.-.... +. +..... .+.|.++++.+ ++||++-+ | .+.
T Consensus 144 ~~~~ianig~~~~~e~~~~~ve~~~adal~ihln~~qe~~~p~Gd~~~~~~~~~I~~l~~~~--~~PVivK~-vg~g~s~ 220 (365)
T 3sr7_A 144 HLLLATNIGLDKPYQAGLQAVRDLQPLFLQVHINLMQELLMPEGEREFRSWKKHLSDYAKKL--QLPFILKE-VGFGMDV 220 (365)
T ss_dssp -CCEEEEEETTSCHHHHHHHHHHHCCSCEEEEECHHHHHTSSSSCCCCHHHHHHHHHHHHHC--CSCEEEEE-CSSCCCH
T ss_pred CCcEEEEeCCCCCHHHHHHHHHhcCCCEEEEeccccccccCCCCCCcHHHHHHHHHHHHHhh--CCCEEEEE-CCCCCCH
Confidence 456653322 35666554 45889999998532110 11 111212 36788887776 79999974 6 789
Q ss_pred HHHHHHHHcCCCEEEec
Q 017718 290 TDVFKALALGASGIFIG 306 (367)
Q Consensus 290 ~dv~kal~lGAd~V~ig 306 (367)
+++.++..+|||+|.++
T Consensus 221 e~A~~l~~aGad~I~V~ 237 (365)
T 3sr7_A 221 KTIQTAIDLGVKTVDIS 237 (365)
T ss_dssp HHHHHHHHHTCCEEECC
T ss_pred HHHHHHHHcCCCEEEEe
Confidence 99999999999999884
|
| >1rpx_A Protein (ribulose-phosphate 3-epimerase); chloroplast, calvin cycle, oxidative pentose PH pathway; 2.30A {Solanum tuberosum} SCOP: c.1.2.2 | Back alignment and structure |
|---|
Probab=86.24 E-value=6.1 Score=34.79 Aligned_cols=130 Identities=15% Similarity=0.090 Sum_probs=76.2
Q ss_pred EEeecCCHHHHHHHHHHHHHcCCcEEEEec-CCCCCCchhHHhhhhcCCCCccccccccccccCccccccchhhHHHhhh
Q 017718 128 QLYVYKDRNVVAQLVRRAERAGFKAIALTV-DTPRLGRREADIKNRFTLPPFLTLKNFQGLDLGKMDEANDSGLAAYVAG 206 (367)
Q Consensus 128 QLy~~~d~~~~~~~l~ra~~~G~~ai~itv-d~p~~g~r~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 206 (367)
.+....|.....+.++.+.+.|++.+-+.+ |.+.. | ++
T Consensus 15 p~i~a~d~~~~~~~i~~~~~~G~d~i~l~~~dg~f~-------------~------~~---------------------- 53 (230)
T 1rpx_A 15 PSILSANFSKLGEQVKAIEQAGCDWIHVDVMDGRFV-------------P------NI---------------------- 53 (230)
T ss_dssp EBGGGSCGGGHHHHHHHHHHTTCCCEEEEEEBSSSS-------------S------CB----------------------
T ss_pred EEeecCCHHHHHHHHHHHHHCCCCEEEEeeccCCcc-------------c------cc----------------------
Confidence 334467777788889999999998876654 32210 1 10
Q ss_pred ccCccc-cHHHHHhhcCCCEEEEec-CCH-HHHHHHHHcCCcEEEEcCCCCCCCCCccchHHHHHHHHHHhcCCCcEEEe
Q 017718 207 QIDRSL-SWKWLQTITKLPILVKGV-LTA-EDARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLD 283 (367)
Q Consensus 207 ~~d~~~-~~~~l~~~~~~Pv~vK~v-~~~-~~a~~~~~~G~d~i~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~~~via~ 283 (367)
...+ ..+.+++.++.|+.+-.. .++ +.++.+.++|+|+|.++..... . ....+.+..+.+ . .+.++.+
T Consensus 54 --~~~~~~i~~l~~~~~~~~~v~l~vnd~~~~v~~~~~~Gad~v~vh~~~~~---~-~~~~~~~~~~~~-~--g~~ig~~ 124 (230)
T 1rpx_A 54 --TIGPLVVDSLRPITDLPLDVHLMIVEPDQRVPDFIKAGADIVSVHCEQSS---T-IHLHRTINQIKS-L--GAKAGVV 124 (230)
T ss_dssp --CCCHHHHHHHGGGCCSCEEEEEESSSHHHHHHHHHHTTCSEEEEECSTTT---C-SCHHHHHHHHHH-T--TSEEEEE
T ss_pred --ccCHHHHHHHHhccCCcEEEEEEecCHHHHHHHHHHcCCCEEEEEecCcc---c-hhHHHHHHHHHH-c--CCcEEEE
Confidence 0001 123667666667666543 344 4688899999999999532001 1 223344544433 2 3455554
Q ss_pred cCCCCHHHHHHHHHcCCCEEEech
Q 017718 284 GGVRRGTDVFKALALGASGIFIGR 307 (367)
Q Consensus 284 GGI~~~~dv~kal~lGAd~V~ig~ 307 (367)
---.+..+.++++..|+|.|.+.+
T Consensus 125 ~~p~t~~e~~~~~~~~~d~vl~~~ 148 (230)
T 1rpx_A 125 LNPGTPLTAIEYVLDAVDLVLIMS 148 (230)
T ss_dssp ECTTCCGGGGTTTTTTCSEEEEES
T ss_pred eCCCCCHHHHHHHHhhCCEEEEEE
Confidence 333466777777778999985443
|
| >2e6f_A Dihydroorotate dehydrogenase; chagas disease, pyrimidine biosynthesis, fumarate reductase, energy metabolism, redox homeostasis, flavoprotein; HET: FMN OXC; 1.26A {Trypanosoma cruzi} PDB: 2e6a_A* 2e6d_A* 2e68_A* 2djl_A* 2djx_A* 3c3n_A* 2b4g_A* 3c61_A* 3mhu_A* 3mjy_A* | Back alignment and structure |
|---|
Probab=86.23 E-value=1.7 Score=40.44 Aligned_cols=105 Identities=15% Similarity=0.045 Sum_probs=61.0
Q ss_pred CCceEEEEeecCCHHHHHHHHHHHHHcC-CcEEEEecCCCCCCchhHHhhhh-cCCCCccccccccccccCccccccc-h
Q 017718 122 PGIRFFQLYVYKDRNVVAQLVRRAERAG-FKAIALTVDTPRLGRREADIKNR-FTLPPFLTLKNFQGLDLGKMDEAND-S 198 (367)
Q Consensus 122 ~~~~~~QLy~~~d~~~~~~~l~ra~~~G-~~ai~itvd~p~~g~r~~~~~~~-~~~p~~~~~~~~~~~~~~~~~~~~~-~ 198 (367)
.-|.++.+...-+.+...+++++++++| ++++.++--.. .+.. -|.+.. ..++.. ....+ +
T Consensus 160 ~~Pv~vK~~~~~~~~~~~~~a~~~~~aG~~d~i~v~~~~~-~~~~-i~~~~~~~~~~~~--------------~~~gG~s 223 (314)
T 2e6f_A 160 GLPFGVKMPPYFDIAHFDTAAAVLNEFPLVKFVTCVNSVG-NGLV-IDAESESVVIKPK--------------QGFGGLG 223 (314)
T ss_dssp CSCEEEEECCCCCHHHHHHHHHHHHTCTTEEEEEECCCEE-EEEC-EETTTTEESCCGG--------------GGEEEEE
T ss_pred CCCEEEEECCCCCHHHHHHHHHHHHhcCCceEEEEeCCCC-cccc-ccCCCCCcccccC--------------cCCCccC
Confidence 3478888876667777888899999999 99988643210 0000 000000 000000 00000 0
Q ss_pred hhHHHhhhccCccccHH---HHHhhc-CCCEEEEec-CCHHHHHHHHHcCCcEEEE
Q 017718 199 GLAAYVAGQIDRSLSWK---WLQTIT-KLPILVKGV-LTAEDARIAVQAGAAGIIV 249 (367)
Q Consensus 199 ~~~~~~~~~~d~~~~~~---~l~~~~-~~Pv~vK~v-~~~~~a~~~~~~G~d~i~v 249 (367)
+. . .....|+ .+++.. ++||+.-+- .+.+++..+..+|||+|.+
T Consensus 224 g~--~-----~~p~~~~~i~~v~~~~~~ipvi~~GGI~~~~da~~~l~~GAd~V~i 272 (314)
T 2e6f_A 224 GK--Y-----ILPTALANVNAFYRRCPDKLVFGCGGVYSGEDAFLHILAGASMVQV 272 (314)
T ss_dssp SG--G-----GHHHHHHHHHHHHHHCTTSEEEEESSCCSHHHHHHHHHHTCSSEEE
T ss_pred cc--c-----ccHHHHHHHHHHHHhcCCCCEEEECCCCCHHHHHHHHHcCCCEEEE
Confidence 00 0 0011333 677777 899887664 6899999999999999988
|
| >1tv5_A Dhodehase, dihydroorotate dehydrogenase homolog, mitochondri, dihydroorotate; alpha-beta barrel, TIM barrel, oxidoreductase; HET: A26 FMN ORO N8E; 2.40A {Plasmodium falciparum} SCOP: c.1.4.1 | Back alignment and structure |
|---|
Probab=86.21 E-value=4 Score=40.36 Aligned_cols=97 Identities=22% Similarity=0.318 Sum_probs=60.8
Q ss_pred c-eEEEEeecCCHHHHHHHHHHHHHcCCcEEEEecCCCCCCchhHHhhhhcCCCCccccccccccccCccccccchhhHH
Q 017718 124 I-RFFQLYVYKDRNVVAQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLTLKNFQGLDLGKMDEANDSGLAA 202 (367)
Q Consensus 124 ~-~~~QLy~~~d~~~~~~~l~ra~~~G~~ai~itvd~p~~g~r~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~ 202 (367)
| .++.+-+..+.+.+.++++.++++|+++|+++-.+.. |. ++. .+ .+ ..+.-++..
T Consensus 298 P~V~vKispd~~~ed~~~iA~~~~~aGaDgI~v~ntt~~---~~-d~~-~~--------~~---------~~GGlSG~~- 354 (443)
T 1tv5_A 298 PLVFVKLAPDLNQEQKKEIADVLLETNIDGMIISNTTTQ---IN-DIK-SF--------EN---------KKGGVSGAK- 354 (443)
T ss_dssp CEEEEEECSCCCHHHHHHHHHHHHHTTCSEEEECCCBSC---CC-CCG-GG--------TT---------CCSEEEEHH-
T ss_pred CeEEEEeCCCCCHHHHHHHHHHHHHcCCCEEEEECCCcc---cc-ccc-cc--------cc---------ccCCcCCCc-
Confidence 6 6888866556667788999999999999988654321 10 000 00 00 000000100
Q ss_pred HhhhccCccccHH---HHHhhc--CCCEEEEe-cCCHHHHHHHHHcCCcEEEE
Q 017718 203 YVAGQIDRSLSWK---WLQTIT--KLPILVKG-VLTAEDARIAVQAGAAGIIV 249 (367)
Q Consensus 203 ~~~~~~d~~~~~~---~l~~~~--~~Pv~vK~-v~~~~~a~~~~~~G~d~i~v 249 (367)
+ ....|+ .+++.+ ++||+.-+ +.+.++|..++.+|||+|.+
T Consensus 355 -~-----~~~sl~~i~~v~~~v~~~iPVIg~GGI~s~~DA~e~l~aGAd~Vqi 401 (443)
T 1tv5_A 355 -L-----KDISTKFICEMYNYTNKQIPIIASGGIFSGLDALEKIEAGASVCQL 401 (443)
T ss_dssp -H-----HHHHHHHHHHHHHHTTTCSCEEEESSCCSHHHHHHHHHTTEEEEEE
T ss_pred -c-----hHHHHHHHHHHHHHcCCCCcEEEECCCCCHHHHHHHHHcCCCEEEE
Confidence 0 011233 677777 79988665 58999999999999999988
|
| >3fa4_A 2,3-dimethylmalate lyase; alpha/beta barrel, helix swapping; 2.18A {Aspergillus niger} PDB: 3fa3_A | Back alignment and structure |
|---|
Probab=86.17 E-value=4.9 Score=37.60 Aligned_cols=84 Identities=23% Similarity=0.246 Sum_probs=56.1
Q ss_pred CCCEEEEecCCHHHHHHHHHcCCcEEEEcCCC------CCCCCCccchHH-HHHHHHHHhc--CCCcEEEec--CCCCHH
Q 017718 222 KLPILVKGVLTAEDARIAVQAGAAGIIVSNHG------ARQLDYVPATIM-ALEEVVKATQ--GRIPVFLDG--GVRRGT 290 (367)
Q Consensus 222 ~~Pv~vK~v~~~~~a~~~~~~G~d~i~vs~~g------g~~~~~~~~~~~-~l~~i~~~~~--~~~~via~G--GI~~~~ 290 (367)
+.|+++=++-+.-.|+.+.++|+|+|.+|+.+ | ..|.++.+++ .+..+....+ .++||++|. |..++.
T Consensus 17 ~~~i~~~~a~D~~sA~l~e~aGf~ai~vsG~~~a~~~~G-~pD~~~vt~~em~~~~~~I~~~~~~~PviaD~d~Gyg~~~ 95 (302)
T 3fa4_A 17 DSFIVAPGVYDGLSARVALSAGFDALYMTGAGTAASVHG-QADLGICTLNDMRANAEMISNISPSTPVIADADTGYGGPI 95 (302)
T ss_dssp TCCEEEEEECSHHHHHHHHTTTCSCEEECHHHHHHHHHS-CCSSSCCCHHHHHHHHHHHHTTSTTSCEEEECTTTTSSHH
T ss_pred CCeEEEecCcCHHHHHHHHHcCCCEEEeCcHHHHHHHcC-CCCCCcCCHHHHHHHHHHHHhhccCCCEEEECCCCCCCHH
Confidence 45787778889999999999999999997521 1 2355554443 3333332222 279999976 444665
Q ss_pred HHH----HHHHcCCCEEEec
Q 017718 291 DVF----KALALGASGIFIG 306 (367)
Q Consensus 291 dv~----kal~lGAd~V~ig 306 (367)
++. +....||.+|.|=
T Consensus 96 ~v~~tv~~l~~aGaagv~iE 115 (302)
T 3fa4_A 96 MVARTTEQYSRSGVAAFHIE 115 (302)
T ss_dssp HHHHHHHHHHHTTCCEEEEC
T ss_pred HHHHHHHHHHHcCCcEEEEC
Confidence 544 3445899999774
|
| >3tji_A Mandelate racemase/muconate lactonizing enzyme, N domain protein; enolase, dehydratase, enzyme function initiative, EFI, lyase; 1.80A {Enterobacter SP} | Back alignment and structure |
|---|
Probab=86.15 E-value=7.3 Score=38.06 Aligned_cols=143 Identities=15% Similarity=0.022 Sum_probs=86.0
Q ss_pred cCCHHHHHHHHHHHHHcCCcEEEEecCCCCCCchhHHhhhhcCCCCccccccccccccCccccccchhhHHHhhhccCcc
Q 017718 132 YKDRNVVAQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLTLKNFQGLDLGKMDEANDSGLAAYVAGQIDRS 211 (367)
Q Consensus 132 ~~d~~~~~~~l~ra~~~G~~ai~itvd~p~~g~r~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~ 211 (367)
..+++.+.+.++++.+.||+++=+.++..... .+.. .-|.+.... ... . ..+.+ +.+
T Consensus 152 ~~~~e~~~~~a~~~~~~G~~~iKlKvG~~~~~---~~~~---~~~~~~~~~--------~~~--~---~~~~~----~~d 208 (422)
T 3tji_A 152 GETLEALFASVDALIAQGYRHIRCQLGFYGGT---PSAL---HAPDNPTPG--------AWF--D---QQEYM----SNT 208 (422)
T ss_dssp ESSHHHHHHHHHHHHHTTCSEEEEEESCCCBC---GGGS---CCCSSCCSS--------EEC--C---HHHHH----HHH
T ss_pred CCCHHHHHHHHHHHHHcCCCEEEEeeccCCcc---cccc---ccccccccc--------ccc--c---chhHH----HHH
Confidence 46788888888888889999998887643110 0000 000000000 000 0 00000 011
Q ss_pred cc-HHHHHhhc--CCCEEEEec--CCHHHH----HHHHHcCCcEEEEcCCCCCCCCCccchHHHHHHHHHHhcCCCcEEE
Q 017718 212 LS-WKWLQTIT--KLPILVKGV--LTAEDA----RIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFL 282 (367)
Q Consensus 212 ~~-~~~l~~~~--~~Pv~vK~v--~~~~~a----~~~~~~G~d~i~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~~~via 282 (367)
+. .+.+|+.+ +++|.+..- .+.++| +.+.+.|++.|-- ...+..++.+.++++.+ .+||++
T Consensus 209 ~e~v~avR~avG~d~~L~vDaN~~~~~~~A~~~~~~Le~~~i~~iEq--------P~~~~d~~~~~~l~~~~--~iPIa~ 278 (422)
T 3tji_A 209 VEMFHALREKYGWKLHILHDVHERLFPQQAVQLAKQLEPFQPYFIED--------ILPPQQSAWLEQVRQQS--CVPLAL 278 (422)
T ss_dssp HHHHHHHHHHHCSSSEEEEECTTCSCHHHHHHHHHHHGGGCCSEEEC--------CSCGGGGGGHHHHHHHC--CCCEEE
T ss_pred HHHHHHHHHHcCCCCEEEEECCCCCCHHHHHHHHHHHHhhCCCeEEC--------CCChhhHHHHHHHHhhC--CCCEEE
Confidence 11 23778876 578888754 455554 5566778777641 11223556677887776 799999
Q ss_pred ecCCCCHHHHHHHHHcC-CCEEEech
Q 017718 283 DGGVRRGTDVFKALALG-ASGIFIGR 307 (367)
Q Consensus 283 ~GGI~~~~dv~kal~lG-Ad~V~ig~ 307 (367)
++.+.+..|+.+++..| +|.|++--
T Consensus 279 dE~~~~~~~~~~ll~~ga~d~v~~k~ 304 (422)
T 3tji_A 279 GELFNNPAEWHDLIVNRRIDFIRCHV 304 (422)
T ss_dssp CTTCCSGGGTHHHHHTTCCSEECCCG
T ss_pred eCCcCCHHHHHHHHhcCCCCEEecCc
Confidence 99999999999999987 79998853
|
| >3oa3_A Aldolase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, pathogenic fungus; 1.60A {Coccidioides immitis} | Back alignment and structure |
|---|
Probab=86.13 E-value=6.5 Score=36.52 Aligned_cols=75 Identities=16% Similarity=0.154 Sum_probs=50.1
Q ss_pred HHHHHHHHcCCcEEEEc-CCCCCCCCC-ccchHHHHHHHHHHhcCC-CcEEEecCCCCHHHHHHH----HHcCCCEEEec
Q 017718 234 EDARIAVQAGAAGIIVS-NHGARQLDY-VPATIMALEEVVKATQGR-IPVFLDGGVRRGTDVFKA----LALGASGIFIG 306 (367)
Q Consensus 234 ~~a~~~~~~G~d~i~vs-~~gg~~~~~-~~~~~~~l~~i~~~~~~~-~~via~GGI~~~~dv~ka----l~lGAd~V~ig 306 (367)
.+++.+.+.|||-|.+. |-|. -.++ .....+-|.++++.+++. +.||..-+.-+.+++.++ ..+|||+|--.
T Consensus 130 ~Ea~~Ai~~GAdEIDmVINig~-lk~g~~~~v~~eI~~V~~a~~~~~lKVIlEt~~Lt~eei~~A~~ia~eaGADfVKTS 208 (288)
T 3oa3_A 130 SEAKRAMQNGASELDMVMNYPW-LSEKRYTDVFQDIRAVRLAAKDAILKVILETSQLTADEIIAGCVLSSLAGADYVKTS 208 (288)
T ss_dssp HHHHHHHHTTCSEEEEECCHHH-HHTTCHHHHHHHHHHHHHHTTTSEEEEECCGGGCCHHHHHHHHHHHHHTTCSEEECC
T ss_pred HHHHHHHHcCCCEEEEEeehhh-hcCCcHHHHHHHHHHHHHHhcCCCceEEEECCCCCHHHHHHHHHHHHHcCCCEEEcC
Confidence 56889999999999964 3221 1111 122344566676666443 788998888888886654 34799999877
Q ss_pred hHH
Q 017718 307 RPV 309 (367)
Q Consensus 307 ~~~ 309 (367)
+-|
T Consensus 209 TGf 211 (288)
T 3oa3_A 209 TGF 211 (288)
T ss_dssp CSS
T ss_pred CCC
Confidence 644
|
| >3q45_A Mandelate racemase/muconate lactonizing enzyme FA possible chloromuconate cycloisomerase...; (beta/alpha)8-barrel; 3.00A {Cytophaga hutchinsonii} PDB: 3q4d_A | Back alignment and structure |
|---|
Probab=86.11 E-value=8.3 Score=36.80 Aligned_cols=119 Identities=13% Similarity=0.184 Sum_probs=79.1
Q ss_pred cCCHHHHHHHHHHHHHcCCcEEEEecCCCCCCchhHHhhhhcCCCCccccccccccccCccccccchhhHHHhhhccCcc
Q 017718 132 YKDRNVVAQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLTLKNFQGLDLGKMDEANDSGLAAYVAGQIDRS 211 (367)
Q Consensus 132 ~~d~~~~~~~l~ra~~~G~~ai~itvd~p~~g~r~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~ 211 (367)
..+++.+.+.++++.+.|++++=+.++... + .+
T Consensus 138 ~~~~e~~~~~a~~~~~~G~~~~K~KvG~~~----~-------------------------------------------~d 170 (368)
T 3q45_A 138 IDEPHKMAADAVQIKKNGFEIIKVKVGGSK----E-------------------------------------------LD 170 (368)
T ss_dssp SCCHHHHHHHHHHHHHTTCSEEEEECCSCH----H-------------------------------------------HH
T ss_pred CCCHHHHHHHHHHHHHcCCCeEEEEecCCH----H-------------------------------------------HH
Confidence 357777777777777899998876554210 0 01
Q ss_pred c-cHHHHHhhc--CCCEEEEec--CCHHH----HHHHHHcCCcEEEEcCCCCCCCCCccchHHHHHHHHHHhcCCCcEEE
Q 017718 212 L-SWKWLQTIT--KLPILVKGV--LTAED----ARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFL 282 (367)
Q Consensus 212 ~-~~~~l~~~~--~~Pv~vK~v--~~~~~----a~~~~~~G~d~i~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~~~via 282 (367)
+ ..+.+|+.+ ++++.+.-- .+.++ ++.+.+.|++.|-= ...+..++.+.++++.. .+||.+
T Consensus 171 ~~~v~avR~~~g~~~~l~vDaN~~~~~~~A~~~~~~l~~~~i~~iEq--------P~~~~~~~~~~~l~~~~--~iPIa~ 240 (368)
T 3q45_A 171 VERIRMIREAAGDSITLRIDANQGWSVETAIETLTLLEPYNIQHCEE--------PVSRNLYTALPKIRQAC--RIPIMA 240 (368)
T ss_dssp HHHHHHHHHHHCSSSEEEEECTTCBCHHHHHHHHHHHGGGCCSCEEC--------CBCGGGGGGHHHHHHTC--SSCEEE
T ss_pred HHHHHHHHHHhCCCCeEEEECCCCCChHHHHHHHHHHhhcCCCEEEC--------CCChhHHHHHHHHHhhC--CCCEEE
Confidence 1 123667666 467777643 34555 44566677776641 11223456677777655 799999
Q ss_pred ecCCCCHHHHHHHHHcC-CCEEEech
Q 017718 283 DGGVRRGTDVFKALALG-ASGIFIGR 307 (367)
Q Consensus 283 ~GGI~~~~dv~kal~lG-Ad~V~ig~ 307 (367)
+..+.+..|+.+++..| +|.|++--
T Consensus 241 dE~~~~~~~~~~~~~~~~~d~v~~k~ 266 (368)
T 3q45_A 241 DESCCNSFDAERLIQIQACDSFNLKL 266 (368)
T ss_dssp STTCCSHHHHHHHHHTTCCSEEEECT
T ss_pred cCCcCCHHHHHHHHHcCCCCeEEech
Confidence 99999999999999976 79998864
|
| >1f6k_A N-acetylneuraminate lyase; beta barrel; 1.60A {Haemophilus influenzae} SCOP: c.1.10.1 PDB: 1f5z_A 1f6p_A 1f73_A* 1f74_A* 1f7b_A* | Back alignment and structure |
|---|
Probab=85.90 E-value=21 Score=32.80 Aligned_cols=181 Identities=14% Similarity=0.063 Sum_probs=101.0
Q ss_pred ceEeCcccchhccCChhhHHHHHHHHH-cCCceee--c---CCCCCCHHHHH-------hh-CC-CceEEEEeecCCHHH
Q 017718 73 PIMIAPTAMQKMAHPEGEYATARAASA-AGTIMTL--S---SWSTSSVEEVA-------ST-GP-GIRFFQLYVYKDRNV 137 (367)
Q Consensus 73 Pi~iAPm~~~~l~~~~~e~~~a~aa~~-~G~~~~v--s---~~~~~~~e~i~-------~~-~~-~~~~~QLy~~~d~~~ 137 (367)
|.++.|+.-.+-.+.+.-..+.+-.-+ .|+...+ | +..+.+.||-. +. .. -|.+...- ..+-+.
T Consensus 9 ~a~vTPf~~dg~iD~~~l~~lv~~li~~~Gv~gl~~~GttGE~~~Ls~~Er~~v~~~~~~~~~grvpviaGvg-~~~t~~ 87 (293)
T 1f6k_A 9 SALLVSFNEDGTINEKGLRQIIRHNIDKMKVDGLYVGGSTGENFMLSTEEKKEIFRIAKDEAKDQIALIAQVG-SVNLKE 87 (293)
T ss_dssp EECCCCBCTTSCBCHHHHHHHHHHHHHTSCCSEEEESSGGGTGGGSCHHHHHHHHHHHHHHHTTSSEEEEECC-CSCHHH
T ss_pred EeeEcCCCCCCCcCHHHHHHHHHHHHhhCCCcEEEeCccccchhhCCHHHHHHHHHHHHHHhCCCCeEEEecC-CCCHHH
Confidence 455667643222333333466666667 8875432 3 33556766532 21 22 35555553 345666
Q ss_pred HHHHHHHHHHcCCcEEEEecCCCCCCchhHHhhhhcCCCCccccccccccccCccccccchhhHHHhhhccCccccHHHH
Q 017718 138 VAQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLTLKNFQGLDLGKMDEANDSGLAAYVAGQIDRSLSWKWL 217 (367)
Q Consensus 138 ~~~~l~ra~~~G~~ai~itvd~p~~g~r~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~l 217 (367)
..++.+.|+++|++++.+. .|.. ...+ ..++.+ .++.+
T Consensus 88 ai~la~~a~~~Gadavlv~--~P~y-----------------~~~~-------------~~~l~~----------~f~~v 125 (293)
T 1f6k_A 88 AVELGKYATELGYDCLSAV--TPFY-----------------YKFS-------------FPEIKH----------YYDTI 125 (293)
T ss_dssp HHHHHHHHHHHTCSEEEEE--CCCS-----------------SCCC-------------HHHHHH----------HHHHH
T ss_pred HHHHHHHHHhcCCCEEEEC--CCCC-----------------CCCC-------------HHHHHH----------HHHHH
Confidence 7788999999999999874 2331 0000 001111 23466
Q ss_pred HhhcCCCEEEEec-------CCHHHHHHHHHcC-CcEEEEcCCCCCCCCCccchHHHHHHHHHHhcCCCcEEEecCCCCH
Q 017718 218 QTITKLPILVKGV-------LTAEDARIAVQAG-AAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRG 289 (367)
Q Consensus 218 ~~~~~~Pv~vK~v-------~~~~~a~~~~~~G-~d~i~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~~~via~GGI~~~ 289 (367)
.+.+++||++=.+ .+++...++.+.. +-+|--+ . ..+..+.++.+. ..++.|+ +|. .
T Consensus 126 a~a~~lPiilYn~P~~tg~~l~~~~~~~La~~pnIvgiK~s--~--------gd~~~~~~~~~~-~~~f~v~-~G~---d 190 (293)
T 1f6k_A 126 IAETGSNMIVYSIPFLTGVNMGIEQFGELYKNPKVLGVKFT--A--------GDFYLLERLKKA-YPNHLIW-AGF---D 190 (293)
T ss_dssp HHHHCCCEEEEECHHHHCCCCCHHHHHHHHTSTTEEEEEEC--S--------CCHHHHHHHHHH-CTTSEEE-ECC---G
T ss_pred HHhCCCCEEEEECccccCcCCCHHHHHHHhcCCCEEEEEEC--C--------CCHHHHHHHHHh-CCCeEEE-ECc---H
Confidence 6778899998764 5678777776542 2222221 1 123444455544 2355554 342 3
Q ss_pred HHHHHHHHcCCCEEEechHHHH
Q 017718 290 TDVFKALALGASGIFIGRPVVY 311 (367)
Q Consensus 290 ~dv~kal~lGAd~V~ig~~~l~ 311 (367)
.-++.++++||+++.-+..-++
T Consensus 191 ~~~~~~l~~G~~G~is~~~n~~ 212 (293)
T 1f6k_A 191 EMMLPAASLGVDGAIGSTFNVN 212 (293)
T ss_dssp GGHHHHHHTTCSEEEESTHHHH
T ss_pred HHHHHHHHCCCcEEEeCHHHhh
Confidence 3478889999999999886543
|
| >1p0k_A Isopentenyl-diphosphate delta-isomerase; terpene biosynthesis, dimethylallyl diphosphate, flavoprotein; 1.90A {Bacillus subtilis} SCOP: c.1.4.1 PDB: 1p0n_A* | Back alignment and structure |
|---|
Probab=85.89 E-value=4.3 Score=38.43 Aligned_cols=84 Identities=17% Similarity=0.123 Sum_probs=54.9
Q ss_pred cCCCEEEEec--CCHHH-HHHHHHcCCcEEEEcC-CCCC--CCCCcc---chHHHHHHHHHHhcCCCcEEEe--cCCCCH
Q 017718 221 TKLPILVKGV--LTAED-ARIAVQAGAAGIIVSN-HGAR--QLDYVP---ATIMALEEVVKATQGRIPVFLD--GGVRRG 289 (367)
Q Consensus 221 ~~~Pv~vK~v--~~~~~-a~~~~~~G~d~i~vs~-~gg~--~~~~~~---~~~~~l~~i~~~~~~~~~via~--GGI~~~ 289 (367)
.+.|+++... .+.+. ++.+.++|+|+|.+.. +.-. +..+.+ ..++.+.++++.+ ++||+.- |...+.
T Consensus 115 ~~~pv~~~i~~~~~~~~~~~~~~~~gad~i~i~~~~~~~~~~~~~~~~~~~~~~~i~~vr~~~--~~Pv~vK~~~~~~~~ 192 (349)
T 1p0k_A 115 PNGLIFANLGSEATAAQAKEAVEMIGANALQIHLNVIQEIVMPEGDRSFSGALKRIEQICSRV--SVPVIVKEVGFGMSK 192 (349)
T ss_dssp SSSCEEEEEETTCCHHHHHHHHHHTTCSEEEEEECTTTTC--------CTTHHHHHHHHHHHC--SSCEEEEEESSCCCH
T ss_pred CCceeEEeecCCCCHHHHHHHHHhcCCCeEEecccchhhhcCCCCCcchHHHHHHHHHHHHHc--CCCEEEEecCCCCCH
Confidence 4688887654 34544 4455678999998742 1100 000111 1456777777766 7899985 444789
Q ss_pred HHHHHHHHcCCCEEEec
Q 017718 290 TDVFKALALGASGIFIG 306 (367)
Q Consensus 290 ~dv~kal~lGAd~V~ig 306 (367)
+++.++..+|||+|.+.
T Consensus 193 ~~a~~a~~~Gad~I~v~ 209 (349)
T 1p0k_A 193 ASAGKLYEAGAAAVDIG 209 (349)
T ss_dssp HHHHHHHHHTCSEEEEE
T ss_pred HHHHHHHHcCCCEEEEc
Confidence 99999999999999984
|
| >3ajx_A 3-hexulose-6-phosphate synthase; HPS, OMPDC suprafamily, LYA; 1.60A {Mycobacterium gastri} | Back alignment and structure |
|---|
Probab=85.87 E-value=7.5 Score=33.41 Aligned_cols=82 Identities=22% Similarity=0.179 Sum_probs=48.3
Q ss_pred HHHHhhc-CCCEEE--EecCC-HHH-HHHHHHcCCcEEEEcCCCCCCCCCccchHH-HHHHHHHHhcCCCcEEE-ecCCC
Q 017718 215 KWLQTIT-KLPILV--KGVLT-AED-ARIAVQAGAAGIIVSNHGARQLDYVPATIM-ALEEVVKATQGRIPVFL-DGGVR 287 (367)
Q Consensus 215 ~~l~~~~-~~Pv~v--K~v~~-~~~-a~~~~~~G~d~i~vs~~gg~~~~~~~~~~~-~l~~i~~~~~~~~~via-~GGI~ 287 (367)
+.+|+.+ +.|+++ |. .+ ++. ++.+.++|+|+|+++...+ ..... ++..+.+ . .+++.+ --...
T Consensus 45 ~~l~~~~~~~~i~~~l~~-~di~~~~~~~a~~~Gad~v~vh~~~~------~~~~~~~~~~~~~-~--g~~~gv~~~s~~ 114 (207)
T 3ajx_A 45 TAVKKAHPDKIVFADMKT-MDAGELEADIAFKAGADLVTVLGSAD------DSTIAGAVKAAQA-H--NKGVVVDLIGIE 114 (207)
T ss_dssp HHHHHHSTTSEEEEEEEE-CSCHHHHHHHHHHTTCSEEEEETTSC------HHHHHHHHHHHHH-H--TCEEEEECTTCS
T ss_pred HHHHHhCCCCeEEEEEEe-cCccHHHHHHHHhCCCCEEEEeccCC------hHHHHHHHHHHHH-c--CCceEEEEecCC
Confidence 4777777 788885 74 46 565 8999999999999953221 11222 2222222 2 344422 22333
Q ss_pred CHHHHHHH-HHcCCCEEEec
Q 017718 288 RGTDVFKA-LALGASGIFIG 306 (367)
Q Consensus 288 ~~~dv~ka-l~lGAd~V~ig 306 (367)
|+.+.++. ..+|+|.|.+.
T Consensus 115 ~p~~~~~~~~~~g~d~v~~~ 134 (207)
T 3ajx_A 115 DKATRAQEVRALGAKFVEMH 134 (207)
T ss_dssp SHHHHHHHHHHTTCSEEEEE
T ss_pred ChHHHHHHHHHhCCCEEEEE
Confidence 77774444 45799998554
|
| >3hgj_A Chromate reductase; TIM barrel, oxidoreductase; HET: FMN; 2.00A {Thermus scotoductus} SCOP: c.1.4.0 PDB: 3hf3_A* | Back alignment and structure |
|---|
Probab=85.83 E-value=9.9 Score=36.03 Aligned_cols=86 Identities=17% Similarity=0.185 Sum_probs=57.6
Q ss_pred ceEEEEee------cCCHHHHHHHHHHHHHcCCcEEEEecCCCCCCchhHHhhhhcCCCCccccccccccccCccccccc
Q 017718 124 IRFFQLYV------YKDRNVVAQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLTLKNFQGLDLGKMDEAND 197 (367)
Q Consensus 124 ~~~~QLy~------~~d~~~~~~~l~ra~~~G~~ai~itvd~p~~g~r~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~ 197 (367)
+.++-|-. +.+.+...+++++++++|++.|.++....... ...|
T Consensus 221 pV~vRls~~~~~~~g~~~~~~~~la~~L~~~Gvd~i~vs~g~~~~~---------~~~~--------------------- 270 (349)
T 3hgj_A 221 PLFVRVSATDWGEGGWSLEDTLAFARRLKELGVDLLDCSSGGVVLR---------VRIP--------------------- 270 (349)
T ss_dssp CEEEEEESCCCSTTSCCHHHHHHHHHHHHHTTCCEEEEECCCSCSS---------SCCC---------------------
T ss_pred eEEEEeccccccCCCCCHHHHHHHHHHHHHcCCCEEEEecCCcCcc---------cccC---------------------
Confidence 56776653 23566778889999999999988865321100 0000
Q ss_pred hhhHHHhhhccCccccH---HHHHhhcCCCEEEEec-CCHHHHHHHHHcC-CcEEEE
Q 017718 198 SGLAAYVAGQIDRSLSW---KWLQTITKLPILVKGV-LTAEDARIAVQAG-AAGIIV 249 (367)
Q Consensus 198 ~~~~~~~~~~~d~~~~~---~~l~~~~~~Pv~vK~v-~~~~~a~~~~~~G-~d~i~v 249 (367)
..+...| +.+|+.+++||+.-+. .+.++|+.+++.| +|.|.+
T Consensus 271 ----------~~~~~~~~~~~~ir~~~~iPVi~~Ggi~t~e~a~~~l~~G~aD~V~i 317 (349)
T 3hgj_A 271 ----------LAPGFQVPFADAVRKRVGLRTGAVGLITTPEQAETLLQAGSADLVLL 317 (349)
T ss_dssp ----------CCTTTTHHHHHHHHHHHCCEEEECSSCCCHHHHHHHHHTTSCSEEEE
T ss_pred ----------CCccccHHHHHHHHHHcCceEEEECCCCCHHHHHHHHHCCCceEEEe
Confidence 0011122 2788888999988775 5899999999999 999988
|
| >3eoo_A Methylisocitrate lyase; seattle structural genomics center for infectious disease, ssgcid; 2.90A {Burkholderia pseudomallei 1655} SCOP: c.1.12.7 | Back alignment and structure |
|---|
Probab=85.68 E-value=4.4 Score=37.90 Aligned_cols=68 Identities=16% Similarity=0.077 Sum_probs=48.3
Q ss_pred HHHHHHHHcCCcEEEEcCCCCCCCCCccchHHHHHHHHHHhcCCCcEEEe---cCCCCHHHHHHHHHcCCCEEEechHHH
Q 017718 234 EDARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLD---GGVRRGTDVFKALALGASGIFIGRPVV 310 (367)
Q Consensus 234 ~~a~~~~~~G~d~i~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~~~via~---GGI~~~~dv~kal~lGAd~V~ig~~~l 310 (367)
+-++...++|||.|.+ +| +.+.+.+.++.+.+ ++|++++ +|-.-.-++.+.-.+|.+.|.+|...+
T Consensus 175 ~Ra~ay~~AGAD~if~--~~-------~~~~ee~~~~~~~~--~~Pl~~n~~~~g~tp~~~~~eL~~lGv~~v~~~~~~~ 243 (298)
T 3eoo_A 175 ERAIAYVEAGADMIFP--EA-------MKTLDDYRRFKEAV--KVPILANLTEFGSTPLFTLDELKGANVDIALYCCGAY 243 (298)
T ss_dssp HHHHHHHHTTCSEEEE--CC-------CCSHHHHHHHHHHH--CSCBEEECCTTSSSCCCCHHHHHHTTCCEEEECSHHH
T ss_pred HHHHhhHhcCCCEEEe--CC-------CCCHHHHHHHHHHc--CCCeEEEeccCCCCCCCCHHHHHHcCCeEEEEchHHH
Confidence 3367789999999998 23 34677788888888 5888764 443222234555679999999998776
Q ss_pred HH
Q 017718 311 YS 312 (367)
Q Consensus 311 ~~ 312 (367)
.+
T Consensus 244 ra 245 (298)
T 3eoo_A 244 RA 245 (298)
T ss_dssp HH
T ss_pred HH
Confidence 65
|
| >2zad_A Muconate cycloisomerase; muconate lactonizing enzyme (MLE), TM0006, struct genomics, NPPSFA; HET: 1PE; 1.60A {Thermotoga maritima} PDB: 3deq_A 3der_A* 3des_A* 3dfy_A | Back alignment and structure |
|---|
Probab=85.68 E-value=23 Score=33.09 Aligned_cols=117 Identities=21% Similarity=0.199 Sum_probs=77.6
Q ss_pred CCHHHHHHHHHHHHHcCCcEEEEecCCCCCCchhHHhhhhcCCCCccccccccccccCccccccchhhHHHhhhccCccc
Q 017718 133 KDRNVVAQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLTLKNFQGLDLGKMDEANDSGLAAYVAGQIDRSL 212 (367)
Q Consensus 133 ~d~~~~~~~l~ra~~~G~~ai~itvd~p~~g~r~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~ 212 (367)
.+++.+.+.++++.+.||+++=+.++.. -+.|+.
T Consensus 138 ~~~~~~~~~a~~~~~~Gf~~iKik~g~~----~~~d~~------------------------------------------ 171 (345)
T 2zad_A 138 DTVENRVKEAKKIFEEGFRVIKIKVGEN----LKEDIE------------------------------------------ 171 (345)
T ss_dssp CCHHHHHHHHHHHHHTTCSEEEEECCSC----HHHHHH------------------------------------------
T ss_pred CCHHHHHHHHHHHHHcCcCEEEEeecCC----HHHHHH------------------------------------------
Confidence 4777777788888889999998766531 000000
Q ss_pred cHHHHHhhc-CCCEEEEec--CCHHH----HHHHHHcCCc--EEEEcCCCCCCCCCccchHHHHHHHHHHhcCCCcEEEe
Q 017718 213 SWKWLQTIT-KLPILVKGV--LTAED----ARIAVQAGAA--GIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLD 283 (367)
Q Consensus 213 ~~~~l~~~~-~~Pv~vK~v--~~~~~----a~~~~~~G~d--~i~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~~~via~ 283 (367)
..+.+|+.- ++++.+-.- .+.++ ++.+.+.|++ .|- +. ..+..++.+.++++.. ++||+++
T Consensus 172 ~v~avr~~g~~~~l~vDan~~~~~~~a~~~~~~l~~~~i~~~~iE-------~P-~~~~~~~~~~~l~~~~--~ipia~d 241 (345)
T 2zad_A 172 AVEEIAKVTRGAKYIVDANMGYTQKEAVEFARAVYQKGIDIAVYE-------QP-VRREDIEGLKFVRFHS--PFPVAAD 241 (345)
T ss_dssp HHHHHHHHSTTCEEEEECTTCSCHHHHHHHHHHHHHTTCCCSEEE-------CC-SCTTCHHHHHHHHHHS--SSCEEES
T ss_pred HHHHHHhhCCCCeEEEECCCCCCHHHHHHHHHHHHhcCCCeeeee-------CC-CCcccHHHHHHHHHhC--CCCEEEe
Confidence 012444441 245554321 34444 4567788887 553 11 1234577788888776 7999999
Q ss_pred cCCCCHHHHHHHHHcC-CCEEEe
Q 017718 284 GGVRRGTDVFKALALG-ASGIFI 305 (367)
Q Consensus 284 GGI~~~~dv~kal~lG-Ad~V~i 305 (367)
+.+.+..|+.+.+..| +|.|++
T Consensus 242 E~~~~~~~~~~~i~~~~~d~v~i 264 (345)
T 2zad_A 242 ESARTKFDVMRLVKEEAVDYVNI 264 (345)
T ss_dssp TTCCSHHHHHHHHHHTCCSEEEE
T ss_pred CCcCCHHHHHHHHHhCCCCEEEE
Confidence 9999999999999987 899999
|
| >1wa3_A 2-keto-3-deoxy-6-phosphogluconate aldolase; KDPG, pyruvate, lyase; 1.9A {Thermotoga maritima} SCOP: c.1.10.1 PDB: 1vlw_A | Back alignment and structure |
|---|
Probab=85.59 E-value=5.6 Score=34.24 Aligned_cols=64 Identities=19% Similarity=0.157 Sum_probs=45.4
Q ss_pred HHHHHHHcCCcEEEEcCCCCCCCCCccchHHHHHHHHHHhcCCCcEEEecCCCCHHHHHHHHHcCCCEEEech
Q 017718 235 DARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFIGR 307 (367)
Q Consensus 235 ~a~~~~~~G~d~i~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~~~via~GGI~~~~dv~kal~lGAd~V~ig~ 307 (367)
.++.+.+.|++.|.+.. +. +...+.+.++++.++.++ ++..|-+.+.+++.++...|||++ ++.
T Consensus 27 ~~~~~~~~G~~~iev~~--~~-----~~~~~~i~~ir~~~~~~~-~ig~~~v~~~~~~~~a~~~Gad~i-v~~ 90 (205)
T 1wa3_A 27 KALAVFEGGVHLIEITF--TV-----PDADTVIKELSFLKEKGA-IIGAGTVTSVEQCRKAVESGAEFI-VSP 90 (205)
T ss_dssp HHHHHHHTTCCEEEEET--TS-----TTHHHHHHHTHHHHHTTC-EEEEESCCSHHHHHHHHHHTCSEE-ECS
T ss_pred HHHHHHHCCCCEEEEeC--CC-----hhHHHHHHHHHHHCCCCc-EEEecccCCHHHHHHHHHcCCCEE-EcC
Confidence 36778889999998843 11 233456777766654233 455566889999999999999999 654
|
| >3tml_A 2-dehydro-3-deoxyphosphooctonate aldolase; ssgcid, structural genomics, seattle structural genomics CEN infectious disease; 1.90A {Burkholderia cenocepacia} PDB: 3t4c_A | Back alignment and structure |
|---|
Probab=85.52 E-value=1.9 Score=40.21 Aligned_cols=86 Identities=22% Similarity=0.291 Sum_probs=53.4
Q ss_pred hcCCCEEEEecC--CHHH----HHHHHHcCC------cEEEEcCCCCCCCCCcc--chHHHHHHHHHHhcCCCcEEEe--
Q 017718 220 ITKLPILVKGVL--TAED----ARIAVQAGA------AGIIVSNHGARQLDYVP--ATIMALEEVVKATQGRIPVFLD-- 283 (367)
Q Consensus 220 ~~~~Pv~vK~v~--~~~~----a~~~~~~G~------d~i~vs~~gg~~~~~~~--~~~~~l~~i~~~~~~~~~via~-- 283 (367)
.+++||++|..+ ++++ ++.+.+.|. +-|++- |-|....... ..+..++.+++ . .+||+.|
T Consensus 129 ~~gkPVilK~G~~~t~~e~~~ave~i~~~Gn~~~~~~~~i~L~-erg~~y~~~~~~vdl~~i~~lk~-~--~~pV~~D~s 204 (288)
T 3tml_A 129 RSGKPVNIKKGQFLAPHDMKNVIDKARDAAREAGLSEDRFMAC-ERGVSFGYNNLVSDMRSLAIMRE-T--NAPVVFDAT 204 (288)
T ss_dssp TSSSCEEEECCTTCCTTHHHHHHHHHHHHHHTTTCCSCCEEEE-ECCEECSSSCEECCHHHHHHGGG-G--SSCEEEEHH
T ss_pred ccCCcEEEeCCCCCCHHHHHHHHHHHHHcCCCccCCCCcEEEE-eCCCCCCCCcCcCCHHHHHHHHh-c--CCcEEEcCC
Confidence 468999999975 4433 556667776 556654 3232221111 25667777665 5 7999985
Q ss_pred -------------cCCCCHH--HHHHHHHcCCCEEEechHH
Q 017718 284 -------------GGVRRGT--DVFKALALGASGIFIGRPV 309 (367)
Q Consensus 284 -------------GGI~~~~--dv~kal~lGAd~V~ig~~~ 309 (367)
||-+.-. -...|.++|||+++|=+-+
T Consensus 205 Hs~q~p~~~~~~s~G~r~~v~~~a~AAvA~GadGl~iE~H~ 245 (288)
T 3tml_A 205 HSVQLPGGQGTSSGGQREFVPVLARAAVATGVAGLFMETHP 245 (288)
T ss_dssp HHTCCCC--------CTTHHHHHHHHHHHHCCSEEEEEEES
T ss_pred cccccCCcccCCCCCchhhHHHHHHHHHHcCCCEEEEeecc
Confidence 3443322 3457888999999997644
|
| >3mqt_A Mandelate racemase/muconate lactonizing protein; PSI-II, NYSGXRC, muconate lactonizing EN structural genomics, protein structure initiative; 2.10A {Shewanella pealeana} | Back alignment and structure |
|---|
Probab=85.48 E-value=5.6 Score=38.40 Aligned_cols=82 Identities=10% Similarity=-0.029 Sum_probs=60.2
Q ss_pred HHHhhc--CCCEEEEec--C-CHHHH----HHHHHcCCcEEEEcCCCCCCCCCccchHHHHHHHHHHhcCCCcEEEecCC
Q 017718 216 WLQTIT--KLPILVKGV--L-TAEDA----RIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGV 286 (367)
Q Consensus 216 ~l~~~~--~~Pv~vK~v--~-~~~~a----~~~~~~G~d~i~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~~~via~GGI 286 (367)
.+|+.+ +.+|.+..- . +.++| +.+.+.|++.|-- ...+..++.+.++++.+ .+||++++.+
T Consensus 192 avR~a~G~d~~l~vDan~~~~~~~~A~~~~~~L~~~~i~~iEe--------P~~~~~~~~~~~l~~~~--~iPIa~dE~~ 261 (394)
T 3mqt_A 192 ELREVIGWDMDMMVDCLYRWTDWQKARWTFRQLEDIDLYFIEA--------CLQHDDLIGHQKLAAAI--NTRLCGAEMS 261 (394)
T ss_dssp HHHHHHCSSSEEEEECTTCCSCHHHHHHHHHHTGGGCCSEEES--------CSCTTCHHHHHHHHHHS--SSEEEECTTC
T ss_pred HHHHHhCCCCeEEEECCCCCCCHHHHHHHHHHHhhcCCeEEEC--------CCCcccHHHHHHHHhhC--CCCEEeCCCc
Confidence 677776 578888754 3 55654 4556678777641 11223577788888876 7999999999
Q ss_pred CCHHHHHHHHHcC-CCEEEech
Q 017718 287 RRGTDVFKALALG-ASGIFIGR 307 (367)
Q Consensus 287 ~~~~dv~kal~lG-Ad~V~ig~ 307 (367)
.+..|+.+++..| +|.|++--
T Consensus 262 ~~~~~~~~~l~~~~~d~v~~k~ 283 (394)
T 3mqt_A 262 TTRFEAQEWLEKTGISVVQSDY 283 (394)
T ss_dssp CHHHHHHHHHHHHCCSEECCCT
T ss_pred CCHHHHHHHHHcCCCCeEecCc
Confidence 9999999999986 89998853
|
| >3f4w_A Putative hexulose 6 phosphate synthase; humps, malonate, lyase; 1.65A {Salmonella typhimurium} SCOP: c.1.2.0 | Back alignment and structure |
|---|
Probab=85.43 E-value=9 Score=33.01 Aligned_cols=83 Identities=18% Similarity=0.061 Sum_probs=51.3
Q ss_pred HHHHhh-cCCCEEE--EecCCHHH-HHHHHHcCCcEEEEcCCCCCCCCCccchH-HHHHHHHHHhcCCCcEEEe-cCCCC
Q 017718 215 KWLQTI-TKLPILV--KGVLTAED-ARIAVQAGAAGIIVSNHGARQLDYVPATI-MALEEVVKATQGRIPVFLD-GGVRR 288 (367)
Q Consensus 215 ~~l~~~-~~~Pv~v--K~v~~~~~-a~~~~~~G~d~i~vs~~gg~~~~~~~~~~-~~l~~i~~~~~~~~~via~-GGI~~ 288 (367)
+.+|+. .+.||.+ |.....+. ++.+.++|+|+|++.... ..... +.+..+.+ . .++++.+ -+..+
T Consensus 45 ~~ir~~~~~~~i~~~~~~~~~~~~~~~~~~~~Gad~v~v~~~~------~~~~~~~~~~~~~~-~--g~~~~v~~~~~~t 115 (211)
T 3f4w_A 45 KAIKEKYPHKEVLADAKIMDGGHFESQLLFDAGADYVTVLGVT------DVLTIQSCIRAAKE-A--GKQVVVDMICVDD 115 (211)
T ss_dssp HHHHHHCTTSEEEEEEEECSCHHHHHHHHHHTTCSEEEEETTS------CHHHHHHHHHHHHH-H--TCEEEEECTTCSS
T ss_pred HHHHHhCCCCEEEEEEEeccchHHHHHHHHhcCCCEEEEeCCC------ChhHHHHHHHHHHH-c--CCeEEEEecCCCC
Confidence 477776 4788864 33334554 899999999999994311 11222 23333332 3 4566653 45666
Q ss_pred HH-HHHHHHHcCCCEEEec
Q 017718 289 GT-DVFKALALGASGIFIG 306 (367)
Q Consensus 289 ~~-dv~kal~lGAd~V~ig 306 (367)
.. .+.++..+|+|.|.+.
T Consensus 116 ~~~~~~~~~~~g~d~i~v~ 134 (211)
T 3f4w_A 116 LPARVRLLEEAGADMLAVH 134 (211)
T ss_dssp HHHHHHHHHHHTCCEEEEE
T ss_pred HHHHHHHHHHcCCCEEEEc
Confidence 64 4667777999998875
|
| >1mzh_A Deoxyribose-phosphate aldolase; alpha-beta barrel, structural genomics, PSI, protein structure initiative; 2.00A {Aquifex aeolicus} SCOP: c.1.10.1 | Back alignment and structure |
|---|
Probab=85.40 E-value=8.3 Score=34.18 Aligned_cols=79 Identities=22% Similarity=0.302 Sum_probs=51.7
Q ss_pred ceEEEE---eecCCHHHHHHHHHHHHHcCCcEEEEecCCCCCCchhHHhhhhcCCCCccccccccccccCccccccchhh
Q 017718 124 IRFFQL---YVYKDRNVVAQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLTLKNFQGLDLGKMDEANDSGL 200 (367)
Q Consensus 124 ~~~~QL---y~~~d~~~~~~~l~ra~~~G~~ai~itvd~p~~g~r~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~ 200 (367)
|.++.+ -..-+.+...++.+.++++|++++.. ++ ++. +
T Consensus 117 pv~vKvi~e~~~l~~~~~~~~a~~a~eaGad~I~t--st------------g~~-~------------------------ 157 (225)
T 1mzh_A 117 SAVHKVIVETPYLNEEEIKKAVEICIEAGADFIKT--ST------------GFA-P------------------------ 157 (225)
T ss_dssp TSEEEEECCGGGCCHHHHHHHHHHHHHHTCSEEEC--CC------------SCS-S------------------------
T ss_pred CceEEEEEeCCCCCHHHHHHHHHHHHHhCCCEEEE--CC------------CCC-C------------------------
Confidence 667777 22345666788899999999999832 21 110 0
Q ss_pred HHHhhhccCccccHH---HHHhhc--CCCEEEEe-cCCHHHHHHHHHcCCcEEEEc
Q 017718 201 AAYVAGQIDRSLSWK---WLQTIT--KLPILVKG-VLTAEDARIAVQAGAAGIIVS 250 (367)
Q Consensus 201 ~~~~~~~~d~~~~~~---~l~~~~--~~Pv~vK~-v~~~~~a~~~~~~G~d~i~vs 250 (367)
+..+|+ .+++.+ ++||+.-+ +.+.+++....++|||.|-++
T Consensus 158 ---------gga~~~~i~~v~~~v~~~ipVia~GGI~t~~da~~~l~aGA~~iG~s 204 (225)
T 1mzh_A 158 ---------RGTTLEEVRLIKSSAKGRIKVKASGGIRDLETAISMIEAGADRIGTS 204 (225)
T ss_dssp ---------SCCCHHHHHHHHHHHTTSSEEEEESSCCSHHHHHHHHHTTCSEEEES
T ss_pred ---------CCCCHHHHHHHHHHhCCCCcEEEECCCCCHHHHHHHHHhCchHHHHc
Confidence 001232 556655 57877665 468999999999999976553
|
| >4aaj_A N-(5'-phosphoribosyl)anthranilate isomerase; alpha/beta-barrel, hyperthermophilic, phosphoribo isomerase; 1.75A {Pyrococcus furiosus} | Back alignment and structure |
|---|
Probab=85.37 E-value=6.3 Score=35.30 Aligned_cols=77 Identities=21% Similarity=0.183 Sum_probs=52.6
Q ss_pred CEEEEec--CCHHHHHHHHHcCCcEEEEcCCCCCCCCCccchHHHHHHHHHHhcCCCcEEEecCCCCHHHHHHHHH-cCC
Q 017718 224 PILVKGV--LTAEDARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALA-LGA 300 (367)
Q Consensus 224 Pv~vK~v--~~~~~a~~~~~~G~d~i~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~~~via~GGI~~~~dv~kal~-lGA 300 (367)
+..||+| .+.|+++ +.++|+|+|=+--+.+. ...-+.+...++.+.. ..++...|=..+.+++.+.+. +|.
T Consensus 20 ~M~VKICGit~~ed~~-a~~~gaD~iGfIf~~~S---pR~V~~~~A~~i~~~~--~~~~~~v~v~v~~~ei~~~i~~~~l 93 (228)
T 4aaj_A 20 HMFVKICGIKSLEELE-IVEKHADATGVVVNSNS---KRRIPLEKAREIIENS--AIPVFLVSTMVGFSEWAMAIERTGA 93 (228)
T ss_dssp CCEEEECCCCSHHHHH-HHHTTCSEEEEECSSSS---TTBCCHHHHHHHHHHC--SSCEEEEECCCCHHHHHHHHHHHTC
T ss_pred ceEEEECCCCcHHHHH-HHHcCCCEEEEEecCCC---CCCCCHHHHHHHHHhh--CCCCEEEeccCchHHHHHHHHhccc
Confidence 4678887 6789986 67899999865322211 1112345555666655 577888777778888887776 799
Q ss_pred CEEEec
Q 017718 301 SGIFIG 306 (367)
Q Consensus 301 d~V~ig 306 (367)
|.||+=
T Consensus 94 d~vQLH 99 (228)
T 4aaj_A 94 QYIQVH 99 (228)
T ss_dssp SEEEEC
T ss_pred hheecc
Confidence 999984
|
| >1m3u_A 3-methyl-2-oxobutanoate hydroxymethyltransferase; beta-alpha-barrel, TIM-barrel, ketopantoate, selenomethionin decamer; HET: KPL; 1.80A {Escherichia coli} SCOP: c.1.12.8 | Back alignment and structure |
|---|
Probab=85.32 E-value=12 Score=34.36 Aligned_cols=80 Identities=21% Similarity=0.303 Sum_probs=49.0
Q ss_pred HHHhhcCCCEEEEec--C---CHHH----HHHHHHcCCcEEEEcCCCCCCCCCccchHHHHHHHHHHhcCCCcEE-----
Q 017718 216 WLQTITKLPILVKGV--L---TAED----ARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVF----- 281 (367)
Q Consensus 216 ~l~~~~~~Pv~vK~v--~---~~~~----a~~~~~~G~d~i~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~~~vi----- 281 (367)
.+++..+.|+++-.. . +++. |.+++++|+++|.+- || ....+.++.+.+ ..+||+
T Consensus 71 aV~r~~~~~~vvaD~pfgsy~~~~~a~~~a~rl~kaGa~aVklE--gg------~e~~~~I~al~~---agipV~gHiGL 139 (264)
T 1m3u_A 71 AVRRGAPNCLLLADLPFMAYATPEQAFENAATVMRAGANMVKIE--GG------EWLVETVQMLTE---RAVPVCGHLGL 139 (264)
T ss_dssp HHHHHCTTSEEEEECCTTSSSSHHHHHHHHHHHHHTTCSEEECC--CS------GGGHHHHHHHHH---TTCCEEEEEES
T ss_pred HHHhhCCCCcEEEECCCCCcCCHHHHHHHHHHHHHcCCCEEEEC--Cc------HHHHHHHHHHHH---CCCCeEeeecC
Confidence 566667777777554 1 5544 457889999999883 33 223444444433 368888
Q ss_pred ------EecCC----CCHH-------HHHHHHHcCCCEEEec
Q 017718 282 ------LDGGV----RRGT-------DVFKALALGASGIFIG 306 (367)
Q Consensus 282 ------a~GGI----~~~~-------dv~kal~lGAd~V~ig 306 (367)
..||. ++.. |+..+..+||+++.+-
T Consensus 140 tPq~v~~~ggf~v~grt~~~a~~~i~rA~a~~eAGA~~ivlE 181 (264)
T 1m3u_A 140 TPQSVNIFGGYKVQGRGDEAGDQLLSDALALEAAGAQLLVLE 181 (264)
T ss_dssp CGGGHHHHTSSCCCCCSHHHHHHHHHHHHHHHHHTCCEEEEE
T ss_pred CceeecccCCeEEEeCCHHHHHHHHHHHHHHHHCCCcEEEEe
Confidence 35665 3432 3334445899999873
|
| >1s2w_A Phosphoenolpyruvate phosphomutase; phosphonopyruvate, phosphonate biosynthesis pathway, isomera; 1.69A {Mytilus edulis} SCOP: c.1.12.7 PDB: 1m1b_A 1s2t_A 1s2v_A 1pym_A 1s2u_A | Back alignment and structure |
|---|
Probab=85.31 E-value=2.5 Score=39.49 Aligned_cols=83 Identities=25% Similarity=0.246 Sum_probs=53.5
Q ss_pred CCCEEEEecCCHHHHHHHHHcCCcEEEEcCCC-CC---CCCCccchHH----HHHHHHHHhcCCCcEEEec--CCCCHHH
Q 017718 222 KLPILVKGVLTAEDARIAVQAGAAGIIVSNHG-AR---QLDYVPATIM----ALEEVVKATQGRIPVFLDG--GVRRGTD 291 (367)
Q Consensus 222 ~~Pv~vK~v~~~~~a~~~~~~G~d~i~vs~~g-g~---~~~~~~~~~~----~l~~i~~~~~~~~~via~G--GI~~~~d 291 (367)
+-|+++=++-+.-.|+.+.++|+|+|.+++.+ +. ..|.++-+++ .+..|.+.. ++||++|. |..+..+
T Consensus 18 ~~~i~~~~a~D~~sA~~~~~aG~~ai~vsg~~~a~~lG~pD~~~vt~~em~~~~~~I~~~~--~~PviaD~d~Gyg~~~~ 95 (295)
T 1s2w_A 18 KDLEFIMEAHNGLSARIVQEAGFKGIWGSGLSVSAQLGVRDSNEASWTQVVEVLEFMSDAS--DVPILLDADTGYGNFNN 95 (295)
T ss_dssp SSCEEEEEECSHHHHHHHHHHTCSCEEECCHHHHHTC---------CHHHHHHHHHHHHTC--SSCEEEECCSSCSSHHH
T ss_pred CCcEEEecCCCHHHHHHHHHcCCCEEEeChHHHHHhCCCCCCCCCCHHHHHHHHHHHHhcC--CCCEEecCCCCCCCHHH
Confidence 56898888899999999999999999998631 11 1233333332 233444433 79999976 4556555
Q ss_pred HH----HHHHcCCCEEEec
Q 017718 292 VF----KALALGASGIFIG 306 (367)
Q Consensus 292 v~----kal~lGAd~V~ig 306 (367)
+. +.+..||.+|.|=
T Consensus 96 v~~~v~~l~~aGaagv~iE 114 (295)
T 1s2w_A 96 ARRLVRKLEDRGVAGACLE 114 (295)
T ss_dssp HHHHHHHHHHTTCCEEEEE
T ss_pred HHHHHHHHHHcCCcEEEEC
Confidence 54 3456899999873
|
| >2nuw_A 2-keto-3-deoxygluconate/2-keto-3-deoxy-6-phospho aldolase; TIM barrel, lyase; 1.80A {Sulfolobus acidocaldarius dsm 639} PDB: 2nux_A 2nuy_A | Back alignment and structure |
|---|
Probab=85.28 E-value=2.3 Score=39.41 Aligned_cols=85 Identities=16% Similarity=0.205 Sum_probs=47.0
Q ss_pred HHHHHHcCCcEEEEcCCCCCCCCCccchH---HHHHHHHHHhcCCCcEEE-ecCCCCHHHHHH----HHHcCCCEEEech
Q 017718 236 ARIAVQAGAAGIIVSNHGARQLDYVPATI---MALEEVVKATQGRIPVFL-DGGVRRGTDVFK----ALALGASGIFIGR 307 (367)
Q Consensus 236 a~~~~~~G~d~i~vs~~gg~~~~~~~~~~---~~l~~i~~~~~~~~~via-~GGI~~~~dv~k----al~lGAd~V~ig~ 307 (367)
++.+.+.|+|+|++.|+.|-. ...+.- +++..+++.+.+ ||+ .|+..+ .++++ +-.+|||++++-.
T Consensus 26 v~~li~~Gv~gl~v~GtTGE~--~~Ls~eEr~~v~~~~~~~~~g---ViaGvg~~~t-~~ai~la~~A~~~Gadavlv~~ 99 (288)
T 2nuw_A 26 AKNLLEKGIDAIFVNGTTGLG--PALSKDEKRQNLNALYDVTHK---LIFQVGSLNL-NDVMELVKFSNEMDILGVSSHS 99 (288)
T ss_dssp HHHHHHTTCCEEEETSTTTTG--GGSCHHHHHHHHHHHTTTCSC---EEEECCCSCH-HHHHHHHHHHHTSCCSEEEECC
T ss_pred HHHHHHcCCCEEEECccccCh--hhCCHHHHHHHHHHHHHHhCC---eEEeeCCCCH-HHHHHHHHHHHhcCCCEEEEcC
Confidence 456788999999996654421 122222 233333333332 554 444444 44443 2337999999999
Q ss_pred HHHHHhhccChHHHHHHHHHH
Q 017718 308 PVVYSLAAEGEKGVRRVLEML 328 (367)
Q Consensus 308 ~~l~~l~~~G~~~v~~~i~~l 328 (367)
|+++. .-.++++.++++.+
T Consensus 100 P~y~~--~~s~~~l~~~f~~v 118 (288)
T 2nuw_A 100 PYYFP--RLPEKFLAKYYEEI 118 (288)
T ss_dssp CCSSC--SCCHHHHHHHHHHH
T ss_pred CcCCC--CCCHHHHHHHHHHH
Confidence 98763 01455555555444
|
| >1xi3_A Thiamine phosphate pyrophosphorylase; structural genomics, southeast collaboratory for structural genomics, hyperthermophIle; 1.70A {Pyrococcus furiosus} SCOP: c.1.3.1 | Back alignment and structure |
|---|
Probab=85.24 E-value=7.9 Score=33.29 Aligned_cols=35 Identities=26% Similarity=0.474 Sum_probs=29.5
Q ss_pred HHHhhcCCCEEEEecCCHHHHHHHHHcCCcEEEEc
Q 017718 216 WLQTITKLPILVKGVLTAEDARIAVQAGAAGIIVS 250 (367)
Q Consensus 216 ~l~~~~~~Pv~vK~v~~~~~a~~~~~~G~d~i~vs 250 (367)
.+++..++|+++-+..+.+++..+.++|+|+++++
T Consensus 156 ~l~~~~~~pvia~GGI~~~nv~~~~~~Ga~gv~vg 190 (215)
T 1xi3_A 156 KIVESVKIPVVAIGGINKDNAREVLKTGVDGIAVI 190 (215)
T ss_dssp HHHHHCSSCEEEESSCCTTTHHHHHTTTCSEEEES
T ss_pred HHHHhCCCCEEEECCcCHHHHHHHHHcCCCEEEEh
Confidence 55556689999988777888988999999999984
|
| >2gou_A Oxidoreductase, FMN-binding; OLD yeallow enzyme, flavoenzyme; HET: BOG FMN PE4; 1.40A {Shewanella oneidensis} PDB: 2gq8_A* 2gq9_A* 2gqa_A* | Back alignment and structure |
|---|
Probab=85.16 E-value=4.7 Score=38.64 Aligned_cols=34 Identities=26% Similarity=0.215 Sum_probs=30.6
Q ss_pred HHHhhcCCCEEEEecCCHHHHHHHHHcC-CcEEEE
Q 017718 216 WLQTITKLPILVKGVLTAEDARIAVQAG-AAGIIV 249 (367)
Q Consensus 216 ~l~~~~~~Pv~vK~v~~~~~a~~~~~~G-~d~i~v 249 (367)
.+|+.+++||+.-+..+.++|+.+++.| +|+|.+
T Consensus 287 ~i~~~~~iPvi~~Ggi~~~~a~~~l~~g~aD~V~i 321 (365)
T 2gou_A 287 ALREAYQGVLIYAGRYNAEKAEQAINDGLADMIGF 321 (365)
T ss_dssp HHHHHCCSEEEEESSCCHHHHHHHHHTTSCSEEEC
T ss_pred HHHHHCCCcEEEeCCCCHHHHHHHHHCCCcceehh
Confidence 7888899999988877999999999998 999987
|
| >3g8r_A Probable spore coat polysaccharide biosynthesis P; structural genomics, protein structure initiative; 2.49A {Chromobacterium violaceum atcc 12472} | Back alignment and structure |
|---|
Probab=85.09 E-value=7.3 Score=37.19 Aligned_cols=75 Identities=16% Similarity=0.178 Sum_probs=56.5
Q ss_pred hhcCCCEEEEecCCHHHHHHHHHcCCcEEEEcCCCCCCCCCccchHHHHHHHHHHhcCCCcEEEecCCCCHHHHHHHHH-
Q 017718 219 TITKLPILVKGVLTAEDARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALA- 297 (367)
Q Consensus 219 ~~~~~Pv~vK~v~~~~~a~~~~~~G~d~i~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~~~via~GGI~~~~dv~kal~- 297 (367)
+..+++++ -.+++.+.+..+.+.|+|.+-+.. .-...+.+|.++.+ ...|||.+-|..|-+++..|..
T Consensus 88 ~~~Gi~~~-st~fD~~svd~l~~~~v~~~KI~S-------~~~~N~pLL~~va~---~gKPviLstGmstl~Ei~~Ave~ 156 (350)
T 3g8r_A 88 KANGFKAI-CTPFDEESVDLIEAHGIEIIKIAS-------CSFTDWPLLERIAR---SDKPVVASTAGARREDIDKVVSF 156 (350)
T ss_dssp HHTTCEEE-EEECSHHHHHHHHHTTCCEEEECS-------SSTTCHHHHHHHHT---SCSCEEEECTTCCHHHHHHHHHH
T ss_pred HHcCCcEE-eccCCHHHHHHHHHcCCCEEEECc-------ccccCHHHHHHHHh---hCCcEEEECCCCCHHHHHHHHHH
Confidence 44678774 467899999999999999999932 12346677777754 2789999999999999987765
Q ss_pred ---cCCCEEEe
Q 017718 298 ---LGASGIFI 305 (367)
Q Consensus 298 ---lGAd~V~i 305 (367)
.|.+ |.+
T Consensus 157 i~~~g~~-viL 166 (350)
T 3g8r_A 157 MLHRGKD-LTI 166 (350)
T ss_dssp HHTTTCC-EEE
T ss_pred HHHcCCC-EEE
Confidence 3666 444
|
| >2qq6_A Mandelate racemase/muconate lactonizing enzyme- like protein; enolase, Mg ION, PSI-2, NYSGXRC, structural genomics; 2.90A {Rubrobacter xylanophilus dsm 9941} | Back alignment and structure |
|---|
Probab=85.03 E-value=8.1 Score=37.35 Aligned_cols=81 Identities=16% Similarity=0.129 Sum_probs=58.7
Q ss_pred HHHhhc--CCCEEEEec--CCHHH----HHHHHHcCCcEEEEcCCCCCCCCCccchHHHHHHHHHHhcCCCcEEEecCCC
Q 017718 216 WLQTIT--KLPILVKGV--LTAED----ARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVR 287 (367)
Q Consensus 216 ~l~~~~--~~Pv~vK~v--~~~~~----a~~~~~~G~d~i~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~~~via~GGI~ 287 (367)
.+|+.. +++|.+..- .+.++ ++.+.+.|++.|-- ...+..++.+.++++.+ ++||++++.+.
T Consensus 202 avRea~G~d~~l~vDan~~~~~~~a~~~~~~l~~~~i~~iEe--------P~~~~d~~~~~~l~~~~--~iPIa~dE~~~ 271 (410)
T 2qq6_A 202 AVREAVGPEVEVAIDMHGRFDIPSSIRFARAMEPFGLLWLEE--------PTPPENLDALAEVRRST--STPICAGENVY 271 (410)
T ss_dssp HHHHHHCSSSEEEEECTTCCCHHHHHHHHHHHGGGCCSEEEC--------CSCTTCHHHHHHHHTTC--SSCEEECTTCC
T ss_pred HHHHhcCCCCEEEEECCCCCCHHHHHHHHHHHhhcCCCeEEC--------CCChhhHHHHHHHHhhC--CCCEEeCCCcC
Confidence 677766 478887653 45555 44566678876641 11223577777877655 79999999999
Q ss_pred CHHHHHHHHHcC-CCEEEec
Q 017718 288 RGTDVFKALALG-ASGIFIG 306 (367)
Q Consensus 288 ~~~dv~kal~lG-Ad~V~ig 306 (367)
+..++.+++..| +|.|++-
T Consensus 272 ~~~~~~~~i~~~~~d~v~ik 291 (410)
T 2qq6_A 272 TRFDFRELFAKRAVDYVMPD 291 (410)
T ss_dssp SHHHHHHHHHTTCCSEECCB
T ss_pred CHHHHHHHHHcCCCCEEecC
Confidence 999999999987 8999884
|
| >3bo9_A Putative nitroalkan dioxygenase; TM0800, structural genomics center for structural genomics, JCSG, protein structure INI PSI-2; HET: MSE 2PE; 2.71A {Thermotoga maritima MSB8} | Back alignment and structure |
|---|
Probab=85.01 E-value=2.7 Score=39.57 Aligned_cols=76 Identities=14% Similarity=0.158 Sum_probs=55.2
Q ss_pred HHHhhcCCCEEEEecC-C---HHHHHHHHHcCCcEEEEcCCCCCCCCCccchHHHHHHHHHHhcCCCcEEEecCCCCHHH
Q 017718 216 WLQTITKLPILVKGVL-T---AEDARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTD 291 (367)
Q Consensus 216 ~l~~~~~~Pv~vK~v~-~---~~~a~~~~~~G~d~i~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~~~via~GGI~~~~d 291 (367)
.+++.++.|+.+.... + .+.++.+.++|+|.|.++ +|. | .+.+..+++ . .++|+. ++.+.++
T Consensus 71 ~i~~~~~~p~gVnl~~~~~~~~~~~~~~~~~g~d~V~l~--~g~-----p--~~~~~~l~~-~--g~~v~~--~v~s~~~ 136 (326)
T 3bo9_A 71 ELRQKTDKPFGVNIILVSPWADDLVKVCIEEKVPVVTFG--AGN-----P--TKYIRELKE-N--GTKVIP--VVASDSL 136 (326)
T ss_dssp HHHTTCSSCEEEEEETTSTTHHHHHHHHHHTTCSEEEEE--SSC-----C--HHHHHHHHH-T--TCEEEE--EESSHHH
T ss_pred HHHHhcCCCEEEEEeccCCCHHHHHHHHHHCCCCEEEEC--CCC-----c--HHHHHHHHH-c--CCcEEE--EcCCHHH
Confidence 6666667899887654 2 356888899999999883 331 1 344444443 2 577775 5889999
Q ss_pred HHHHHHcCCCEEEe
Q 017718 292 VFKALALGASGIFI 305 (367)
Q Consensus 292 v~kal~lGAd~V~i 305 (367)
+.++...|||++.+
T Consensus 137 a~~a~~~GaD~i~v 150 (326)
T 3bo9_A 137 ARMVERAGADAVIA 150 (326)
T ss_dssp HHHHHHTTCSCEEE
T ss_pred HHHHHHcCCCEEEE
Confidence 99999999999998
|
| >3tha_A Tryptophan synthase alpha chain; structural genomics, center for structural genomics of infec diseases, csgid, lyase; 2.37A {Campylobacter jejuni} | Back alignment and structure |
|---|
Probab=84.93 E-value=3.9 Score=37.29 Aligned_cols=35 Identities=31% Similarity=0.391 Sum_probs=29.2
Q ss_pred HHHHhhcCCCEEEEec-CCHHHHHHHHHcCCcEEEEc
Q 017718 215 KWLQTITKLPILVKGV-LTAEDARIAVQAGAAGIIVS 250 (367)
Q Consensus 215 ~~l~~~~~~Pv~vK~v-~~~~~a~~~~~~G~d~i~vs 250 (367)
+.+|+.+++||++... .++++++.+.+ ++|+++|.
T Consensus 192 ~~vr~~~~~Pv~vGfGIst~e~a~~~~~-~ADGVIVG 227 (252)
T 3tha_A 192 KEIRSFTNLPIFVGFGIQNNQDVKRMRK-VADGVIVG 227 (252)
T ss_dssp HHHHTTCCSCEEEESSCCSHHHHHHHTT-TSSEEEEC
T ss_pred HHHHHhcCCcEEEEcCcCCHHHHHHHHh-cCCEEEEC
Confidence 4788888999999875 58999988876 69999994
|
| >1chr_A Chloromuconate cycloisomerase; 3.00A {Ralstonia eutropha} PDB: 2chr_A | Back alignment and structure |
|---|
Probab=84.77 E-value=7.2 Score=37.19 Aligned_cols=82 Identities=12% Similarity=-0.008 Sum_probs=58.8
Q ss_pred HHHhhc--CCCEEEEec--CCHHH----HHHHHHcCCcEEEEcCCCCCCCCCccchHHHHHHHHHHhcCCCcEEEecCCC
Q 017718 216 WLQTIT--KLPILVKGV--LTAED----ARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVR 287 (367)
Q Consensus 216 ~l~~~~--~~Pv~vK~v--~~~~~----a~~~~~~G~d~i~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~~~via~GGI~ 287 (367)
.+|+.+ ++++.+..- -+.++ ++.+.+.|++.|-= ...+..++.+.++++.. .+||.++.-+.
T Consensus 180 avR~~~g~~~~l~vDan~~~~~~~a~~~~~~l~~~~i~~iEq--------P~~~~~~~~~~~l~~~~--~iPia~dE~~~ 249 (370)
T 1chr_A 180 ALSNSLGSKAYLRVDVNQAWDEQVASVYIPELEALGVELIEQ--------PVGRENTQALRRLSDNN--RVAIMADESLS 249 (370)
T ss_dssp HHHHHSSTTCCEEEECTTCCCTTHHHHHTHHHHTTTEEEEEC--------CSCTTCHHHHHHHHHHS--CSEEEESSSCC
T ss_pred HHHHhcCCCCEEEEECCCCCCHHHHHHHHHHHHhcCCCEEEC--------CCCcccHHHHHHHHhhC--CCCEEeCCCcC
Confidence 677776 368888753 23333 45667777766531 11233567788888776 79999999999
Q ss_pred CHHHHHHHHHcC-CCEEEech
Q 017718 288 RGTDVFKALALG-ASGIFIGR 307 (367)
Q Consensus 288 ~~~dv~kal~lG-Ad~V~ig~ 307 (367)
+..|+.+++..| +|.|++--
T Consensus 250 ~~~~~~~~~~~~~~d~v~~k~ 270 (370)
T 1chr_A 250 TLASAFDLARDRSVDVFSLKL 270 (370)
T ss_dssp SHHHHHHHHTTTSCSEEEECT
T ss_pred CHHHHHHHHHcCCCCEEEECc
Confidence 999999999986 89999853
|
| >3vcn_A Mannonate dehydratase; enolase, magnesium binding site, enzyme function initiative, lyase; 1.45A {Caulobacter crescentus} PDB: 4gme_A* 4fi4_A 3thu_A | Back alignment and structure |
|---|
Probab=84.73 E-value=5.6 Score=38.89 Aligned_cols=83 Identities=8% Similarity=-0.067 Sum_probs=60.9
Q ss_pred HHHHhhc--CCCEEEEec--CCHHH----HHHHHHcCCcEEEEcCCCCCCCCCccchHHHHHHHHHHhcCCCcEEEecCC
Q 017718 215 KWLQTIT--KLPILVKGV--LTAED----ARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGV 286 (367)
Q Consensus 215 ~~l~~~~--~~Pv~vK~v--~~~~~----a~~~~~~G~d~i~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~~~via~GGI 286 (367)
+.+|+.+ +++|.+..- .+.++ ++.+.+.|++.|--- ..+..++.+.++++.+ .+||++++.+
T Consensus 218 ~avR~a~G~d~~l~vDaN~~~~~~~A~~~~~~L~~~~i~~iEqP--------~~~~d~~~~~~l~~~~--~iPIa~dE~~ 287 (425)
T 3vcn_A 218 ERAREVLGWDVHLLHDVHHRLTPIEAARLGKDLEPYRLFWLEDS--------VPAENQAGFRLIRQHT--TTPLAVGEIF 287 (425)
T ss_dssp HHHHHHHCSSSEEEEECTTCCCHHHHHHHHHHHGGGCCSEEECC--------SCCSSTTHHHHHHHHC--CSCEEECTTC
T ss_pred HHHHHHcCCCCEEEEECCCCCCHHHHHHHHHHHHhcCCCEEECC--------CChhhHHHHHHHHhcC--CCCEEeCCCc
Confidence 3788876 578888754 35555 456677888877521 1122456677787776 7999999999
Q ss_pred CCHHHHHHHHHcC-CCEEEech
Q 017718 287 RRGTDVFKALALG-ASGIFIGR 307 (367)
Q Consensus 287 ~~~~dv~kal~lG-Ad~V~ig~ 307 (367)
.+..|+.+++..| +|.|++--
T Consensus 288 ~~~~~~~~~i~~~a~d~v~~k~ 309 (425)
T 3vcn_A 288 AHVWDAKQLIEEQLIDYLRATV 309 (425)
T ss_dssp CSGGGTHHHHHTTCCSEECCCT
T ss_pred CCHHHHHHHHHcCCCCeEecCh
Confidence 9999999999987 89998864
|
| >2z6i_A Trans-2-enoyl-ACP reductase II; fatty acid synthesis, antibiotics, oxidoreductase, flavoprotein; HET: FMN; 1.70A {Streptococcus pneumoniae} PDB: 2z6j_A* | Back alignment and structure |
|---|
Probab=84.72 E-value=3.6 Score=38.76 Aligned_cols=76 Identities=16% Similarity=0.198 Sum_probs=54.8
Q ss_pred HHHhhcCCCEEEEecC-C---HHHHHHHHHcCCcEEEEcCCCCCCCCCccchHHHHHHHHHHhcCCCcEEEecCCCCHHH
Q 017718 216 WLQTITKLPILVKGVL-T---AEDARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTD 291 (367)
Q Consensus 216 ~l~~~~~~Pv~vK~v~-~---~~~a~~~~~~G~d~i~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~~~via~GGI~~~~d 291 (367)
.+++.++.|+.+.... + .+.++.+.++|+|+|.+ |+|. | .+.+..+++ . .+||+.. +.+.++
T Consensus 57 ~i~~~~~~p~gvnl~~~~~~~~~~~~~a~~~g~d~V~~--~~g~-----p--~~~i~~l~~-~--g~~v~~~--v~~~~~ 122 (332)
T 2z6i_A 57 KIKSLTDKPFGVNIMLLSPFVEDIVDLVIEEGVKVVTT--GAGN-----P--SKYMERFHE-A--GIIVIPV--VPSVAL 122 (332)
T ss_dssp HHHHHCCSCEEEEECTTSTTHHHHHHHHHHTTCSEEEE--CSSC-----G--GGTHHHHHH-T--TCEEEEE--ESSHHH
T ss_pred HHHHhcCCCEEEEecCCCCCHHHHHHHHHHCCCCEEEE--CCCC-----h--HHHHHHHHH-c--CCeEEEE--eCCHHH
Confidence 5666667899887664 3 35588899999999998 3331 1 234444443 2 5788864 788999
Q ss_pred HHHHHHcCCCEEEe
Q 017718 292 VFKALALGASGIFI 305 (367)
Q Consensus 292 v~kal~lGAd~V~i 305 (367)
+.++...|+|++.+
T Consensus 123 a~~~~~~GaD~i~v 136 (332)
T 2z6i_A 123 AKRMEKIGADAVIA 136 (332)
T ss_dssp HHHHHHTTCSCEEE
T ss_pred HHHHHHcCCCEEEE
Confidence 98888999999998
|
| >4a29_A Engineered retro-aldol enzyme RA95.0; de novo protein, engineered enzyme, retro-aldolase, directed evolution; HET: 3NK MLT; 1.10A {Synthetic construct} PDB: 4a2s_A* 4a2r_A* 3tc7_A 3tc6_A 3nl8_A* 3nxf_A* 3o6y_X 3ud6_A* 1igs_A 1juk_A 1jul_A* 3hoj_A 1a53_A* 1lbf_A* 1lbl_A* 3nyz_A 3nz1_A* 3uy7_A 3uxd_A* 3uxa_A* ... | Back alignment and structure |
|---|
Probab=84.58 E-value=3.2 Score=37.96 Aligned_cols=69 Identities=14% Similarity=0.297 Sum_probs=50.0
Q ss_pred CHHHHHHHHHcCCcEEEEcCCCCCCCCCccchHHHHHHHHHHhcCCCcEEEecCCCCHHHHHHHHHcCCCEEEec
Q 017718 232 TAEDARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFIG 306 (367)
Q Consensus 232 ~~~~a~~~~~~G~d~i~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~~~via~GGI~~~~dv~kal~lGAd~V~ig 306 (367)
++.+.....++||++|.|-.-. ..-....+.|.++++.+ ++||+---=|-++.++.++-++|||+|.+=
T Consensus 65 dp~~iA~~~~~GA~aiSVLTd~----~~F~Gs~~~L~~vr~~v--~lPvLrKDFiid~yQI~eAr~~GADaILLI 133 (258)
T 4a29_A 65 DPIEYAKFMERYAVGLSITTEE----KYFNGSYETLRKIASSV--SIPILMSDFIVKESQIDDAYNLGADTVLLI 133 (258)
T ss_dssp CHHHHHHHHTTTCSEEEEECCS----TTTCCCHHHHHHHHTTC--SSCEEEESCCCSHHHHHHHHHHTCSEEEEE
T ss_pred CHHHHHHHHhCCCeEEEEeCCC----CCCCCCHHHHHHHHHhc--CCCEeeccccccHHHHHHHHHcCCCeeehH
Confidence 4444334667999999884211 11123556677777766 799998777899999999999999999764
|
| >3l5l_A Xenobiotic reductase A; TIM barrel, oxidoreductase; HET: BU3 FMN; 1.03A {Pseudomonas putida} SCOP: c.1.4.0 PDB: 3l5m_A* 3n19_B* 3n16_A* 3l68_A* 3l67_A* 3l65_A* 3l66_A* 3n14_A* 2h8z_A* 2h90_A* 2h8x_A* | Back alignment and structure |
|---|
Probab=84.31 E-value=7.6 Score=37.07 Aligned_cols=86 Identities=19% Similarity=0.148 Sum_probs=56.7
Q ss_pred ceEEEEeec-------CCHHHHHHHHHHHHHcCCcEEEEecCCCCCCchhHHhhhhcCCCCccccccccccccCcccccc
Q 017718 124 IRFFQLYVY-------KDRNVVAQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLTLKNFQGLDLGKMDEAN 196 (367)
Q Consensus 124 ~~~~QLy~~-------~d~~~~~~~l~ra~~~G~~ai~itvd~p~~g~r~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~ 196 (367)
+.++-|-.. .+.+...+++++++++|++.|.++........ ..|.
T Consensus 227 pV~vRis~~~~~~~G~~~~~~~~~la~~L~~~Gvd~i~vs~g~~~~~~---------~~~~------------------- 278 (363)
T 3l5l_A 227 PLTARFGVLEYDGRDEQTLEESIELARRFKAGGLDLLSVSVGFTIPDT---------NIPW------------------- 278 (363)
T ss_dssp CEEEEEEEECSSSCHHHHHHHHHHHHHHHHHTTCCEEEEEECCCSSCC---------CCCC-------------------
T ss_pred eEEEEecchhcCCCCCCCHHHHHHHHHHHHHcCCCEEEEecCcccccc---------ccCC-------------------
Confidence 566766432 23456677888899999999988764211000 0000
Q ss_pred chhhHHHhhhccCccc--cH-HHHHhhcCCCEEEEec-CCHHHHHHHHHcC-CcEEEE
Q 017718 197 DSGLAAYVAGQIDRSL--SW-KWLQTITKLPILVKGV-LTAEDARIAVQAG-AAGIIV 249 (367)
Q Consensus 197 ~~~~~~~~~~~~d~~~--~~-~~l~~~~~~Pv~vK~v-~~~~~a~~~~~~G-~d~i~v 249 (367)
.+.. .+ +.+|+.+++||+.-+. .+.++|+.+++.| +|.|.+
T Consensus 279 ------------~~~~~~~~~~~ir~~~~iPVi~~GgI~s~e~a~~~l~~G~aD~V~i 324 (363)
T 3l5l_A 279 ------------GPAFMGPIAERVRREAKLPVTSAWGFGTPQLAEAALQANQLDLVSV 324 (363)
T ss_dssp ------------CTTTTHHHHHHHHHHHTCCEEECSSTTSHHHHHHHHHTTSCSEEEC
T ss_pred ------------CcchhHHHHHHHHHHcCCcEEEeCCCCCHHHHHHHHHCCCccEEEe
Confidence 0111 22 2788888999988776 4799999999999 999877
|
| >3my9_A Muconate cycloisomerase; structural genomics, PSI-2, protein structure INI NEW YORK SGX research center for structural genomics, nysgx; 2.20A {Azorhizobium caulinodans} | Back alignment and structure |
|---|
Probab=84.30 E-value=7.8 Score=37.09 Aligned_cols=82 Identities=13% Similarity=0.049 Sum_probs=58.8
Q ss_pred HHHhhc--CCCEEEEec--CCH----HHHHHHHHcCCcEEEEcCCCCCCCCCccchHHHHHHHHHHhcCCCcEEEecCCC
Q 017718 216 WLQTIT--KLPILVKGV--LTA----EDARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVR 287 (367)
Q Consensus 216 ~l~~~~--~~Pv~vK~v--~~~----~~a~~~~~~G~d~i~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~~~via~GGI~ 287 (367)
.+|+.+ ++++.+..- -+. +-++.+.+.|++.|-= ...+..++.+.++++.. .+||.++.-+.
T Consensus 183 avR~~~g~~~~l~vDan~~~~~~~A~~~~~~l~~~~i~~iEq--------P~~~~d~~~~~~l~~~~--~ipIa~dE~~~ 252 (377)
T 3my9_A 183 TMRGEFGERIDLRLDFNQALTPFGAMKILRDVDAFRPTFIEQ--------PVPRRHLDAMAGFAAAL--DTPILADESCF 252 (377)
T ss_dssp HHHHHHGGGSEEEEECTTCCCTTTHHHHHHHHHTTCCSCEEC--------CSCTTCHHHHHHHHHHC--SSCEEESTTCS
T ss_pred HHHHHhCCCCeEEEeCCCCcCHHHHHHHHHHHhhcCCCEEEC--------CCCccCHHHHHHHHHhC--CCCEEECCccC
Confidence 666665 467777643 222 3466677778877641 11223577788888776 79999999999
Q ss_pred CHHHHHHHHHcC-CCEEEech
Q 017718 288 RGTDVFKALALG-ASGIFIGR 307 (367)
Q Consensus 288 ~~~dv~kal~lG-Ad~V~ig~ 307 (367)
+..|+.+++..| +|.|++--
T Consensus 253 ~~~~~~~~i~~~~~d~v~~k~ 273 (377)
T 3my9_A 253 DAVDLMEVVRRQAADAISVKI 273 (377)
T ss_dssp SHHHHHHHHHHTCCSEEECCH
T ss_pred CHHHHHHHHHcCCCCEEEecc
Confidence 999999999987 89998764
|
| >3mkc_A Racemase; metabolic process, PSI2, NYSGXRC, structu genomics, protein structure initiative, NEW YORK SGX resear for structural genomics; 1.77A {Pseudovibrio SP} PDB: 3nzg_A | Back alignment and structure |
|---|
Probab=84.28 E-value=7.5 Score=37.51 Aligned_cols=82 Identities=9% Similarity=-0.063 Sum_probs=60.0
Q ss_pred HHHhhc--CCCEEEEec--C-CHHHH----HHHHHcCCcEEEEcCCCCCCCCCccchHHHHHHHHHHhcCCCcEEEecCC
Q 017718 216 WLQTIT--KLPILVKGV--L-TAEDA----RIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGV 286 (367)
Q Consensus 216 ~l~~~~--~~Pv~vK~v--~-~~~~a----~~~~~~G~d~i~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~~~via~GGI 286 (367)
.+|+.+ +.+|.+..- . +.++| +.+.+.|++.|-- ...+..++.+.++++.+ .+||++++.+
T Consensus 197 avR~a~G~d~~l~vDaN~~~~~~~~A~~~~~~L~~~~i~~iEe--------P~~~~d~~~~~~l~~~~--~iPIa~dE~~ 266 (394)
T 3mkc_A 197 ELRGILGHDTDMMVDYLYRFTDWYEVARLLNSIEDLELYFAEA--------TLQHDDLSGHAKLVENT--RSRICGAEMS 266 (394)
T ss_dssp HHHHHHCSSSEEEEECTTCCCCHHHHHHHHHHTGGGCCSEEES--------CSCTTCHHHHHHHHHHC--SSCBEECTTC
T ss_pred HHHHHhCCCCeEEEeCCCCCCCHHHHHHHHHHhhhcCCeEEEC--------CCCchhHHHHHHHHhhC--CCCEEeCCCC
Confidence 677776 578887654 3 55654 4556677777642 11223567788888776 7999999999
Q ss_pred CCHHHHHHHHHcC-CCEEEech
Q 017718 287 RRGTDVFKALALG-ASGIFIGR 307 (367)
Q Consensus 287 ~~~~dv~kal~lG-Ad~V~ig~ 307 (367)
.+..|+.+++..| +|.|++--
T Consensus 267 ~~~~~~~~~l~~~~~d~v~~k~ 288 (394)
T 3mkc_A 267 TTRFEAEEWITKGKVHLLQSDY 288 (394)
T ss_dssp CHHHHHHHHHHTTCCSEECCCT
T ss_pred CCHHHHHHHHHcCCCCeEecCc
Confidence 9999999999987 89998853
|
| >3i65_A Dihydroorotate dehydrogenase homolog, mitochondrial; triazolopyrimidine,inhibitor, DSM1, FAD, flavoprotein, membrane, mitochondrion; HET: JZ8 FMN ORO LDA; 2.00A {Plasmodium falciparum 3D7} PDB: 3i68_A* 3i6r_A* 3o8a_A* 3sfk_A* | Back alignment and structure |
|---|
Probab=84.26 E-value=3 Score=40.90 Aligned_cols=98 Identities=21% Similarity=0.289 Sum_probs=60.8
Q ss_pred Cc-eEEEEeecCCHHHHHHHHHHHHHcCCcEEEEecCCCCCCchhHHhhhhcCCCCccccccccccccCccccccchhhH
Q 017718 123 GI-RFFQLYVYKDRNVVAQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLTLKNFQGLDLGKMDEANDSGLA 201 (367)
Q Consensus 123 ~~-~~~QLy~~~d~~~~~~~l~ra~~~G~~ai~itvd~p~~g~r~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~ 201 (367)
.| .++.|-+.-+.+.+.++++.++++|+++|+++--+. .|. |+.. + .+ ..+.-++.
T Consensus 269 ~P~V~VKi~pd~~~~~i~~iA~~a~~aGaDgIiv~Ntt~---~r~-dl~~-~--------~~---------~~GGlSG~- 325 (415)
T 3i65_A 269 KPLVFVKLAPDLNQEQKKEIADVLLETNIDGMIISNTTT---QIN-DIKS-F--------EN---------KKGGVSGA- 325 (415)
T ss_dssp CCEEEEEECSCCCHHHHHHHHHHHHHHTCSEEEECCCBS---CCC-CCGG-G--------TT---------CCSEEEEG-
T ss_pred CCeEEEEecCCCCHHHHHHHHHHHHHcCCcEEEEeCCCc---ccc-cccc-c--------cc---------ccCCcCCc-
Confidence 46 688887766777788999999999999998753221 110 1110 0 00 00000000
Q ss_pred HHhhhccCccccHH---HHHhhc--CCCEEEEe-cCCHHHHHHHHHcCCcEEEE
Q 017718 202 AYVAGQIDRSLSWK---WLQTIT--KLPILVKG-VLTAEDARIAVQAGAAGIIV 249 (367)
Q Consensus 202 ~~~~~~~d~~~~~~---~l~~~~--~~Pv~vK~-v~~~~~a~~~~~~G~d~i~v 249 (367)
......++ .+++.+ ++||+.-+ +.+.+||..+..+|||+|.+
T Consensus 326 ------a~~p~al~~I~~v~~~v~~~iPIIg~GGI~s~eDa~e~l~aGAd~VqI 373 (415)
T 3i65_A 326 ------KLKDISTKFICEMYNYTNKQIPIIASGGIFSGLDALEKIEAGASVCQL 373 (415)
T ss_dssp ------GGHHHHHHHHHHHHHHTTTCSCEEECSSCCSHHHHHHHHHHTEEEEEE
T ss_pred ------cchHHHHHHHHHHHHHhCCCCCEEEECCCCCHHHHHHHHHcCCCEEEE
Confidence 01111222 667777 68987655 58899999999999999988
|
| >3lye_A Oxaloacetate acetyl hydrolase; (alpha/beta)8 barrel; 1.30A {Cryphonectria parasitica} PDB: 3m0j_A* 3m0k_A | Back alignment and structure |
|---|
Probab=84.22 E-value=3 Score=39.23 Aligned_cols=67 Identities=21% Similarity=0.169 Sum_probs=44.9
Q ss_pred HHHHHHcCCcEEEEcCCCCCCCCCccchHHHHHHHHHHhcCCCcEEEe---cCCCCHHHHHHHHHcCCCEEEechHHHHH
Q 017718 236 ARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLD---GGVRRGTDVFKALALGASGIFIGRPVVYS 312 (367)
Q Consensus 236 a~~~~~~G~d~i~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~~~via~---GGI~~~~dv~kal~lGAd~V~ig~~~l~~ 312 (367)
++...++|||.|.+- | +.+.+.+.++.+.++ .+|+.++ ||-...-.+.+.-.+|.+.|..+...+.+
T Consensus 184 a~ay~eAGAD~ifi~--~-------~~~~~~~~~i~~~~~-~~Pv~~n~~~~g~~p~~t~~eL~~lGv~~v~~~~~~~ra 253 (307)
T 3lye_A 184 LRAARDEGADVGLLE--G-------FRSKEQAAAAVAALA-PWPLLLNSVENGHSPLITVEEAKAMGFRIMIFSFATLAP 253 (307)
T ss_dssp HHHHHHTTCSEEEEC--C-------CSCHHHHHHHHHHHT-TSCBEEEEETTSSSCCCCHHHHHHHTCSEEEEETTTHHH
T ss_pred HHHHHHCCCCEEEec--C-------CCCHHHHHHHHHHcc-CCceeEEeecCCCCCCCCHHHHHHcCCeEEEEChHHHHH
Confidence 667789999999982 2 346677788888774 4777653 44221123444556899999888766553
|
| >3mwc_A Mandelate racemase/muconate lactonizing protein; enolase, structural genomics, protein structure initiative, nysgrc; 1.80A {Kosmotoga olearia} | Back alignment and structure |
|---|
Probab=83.97 E-value=13 Score=35.95 Aligned_cols=82 Identities=15% Similarity=0.059 Sum_probs=57.8
Q ss_pred HHHhhc--CCCEEEEec--CC---HHHHHHHHHcCCcEEEEcCCCCCCCCCccchHHHHHHHHHHhcCCCcEEEecCCCC
Q 017718 216 WLQTIT--KLPILVKGV--LT---AEDARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRR 288 (367)
Q Consensus 216 ~l~~~~--~~Pv~vK~v--~~---~~~a~~~~~~G~d~i~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~~~via~GGI~~ 288 (367)
.+|+.+ +++|.+.-- -+ .+.++.+.+.|++.|- + ...+..++.+.++++.. .+||.++.-+.+
T Consensus 197 avR~a~G~~~~L~vDaN~~w~~~~~~~~~~l~~~~i~~iE-------q-P~~~~d~~~~~~l~~~~--~iPIa~dE~~~~ 266 (400)
T 3mwc_A 197 ETRRAVGDHFPLWTDANSSFELDQWETFKAMDAAKCLFHE-------Q-PLHYEALLDLKELGERI--ETPICLDESLIS 266 (400)
T ss_dssp HHHHHHCTTSCEEEECTTCCCGGGHHHHHHHGGGCCSCEE-------S-CSCTTCHHHHHHHHHHS--SSCEEESTTCCS
T ss_pred HHHHhcCCCCEEEEeCCCCCCHHHHHHHHHHHhcCCCEEe-------C-CCChhhHHHHHHHHhhC--CCCEEEeCCcCC
Confidence 555555 466766532 11 3456667777877663 1 11233577788888776 799999999999
Q ss_pred HHHHHHHHHcC-CCEEEech
Q 017718 289 GTDVFKALALG-ASGIFIGR 307 (367)
Q Consensus 289 ~~dv~kal~lG-Ad~V~ig~ 307 (367)
..|+.+++..| +|.|++--
T Consensus 267 ~~~~~~~~~~~~~d~v~~k~ 286 (400)
T 3mwc_A 267 SRVAEFVAKLGISNIWNIKI 286 (400)
T ss_dssp HHHHHHHHHTTCCSEEEECH
T ss_pred HHHHHHHHhcCCCCEEEEcc
Confidence 99999999987 79998864
|
| >2hjp_A Phosphonopyruvate hydrolase; phosporus-Ca cleavage, PEP mutase/isocitrate lyase superfamily; HET: XYS PPR; 1.90A {Variovorax SP} PDB: 2dua_A* 2hrw_A | Back alignment and structure |
|---|
Probab=83.92 E-value=3.3 Score=38.59 Aligned_cols=71 Identities=20% Similarity=0.240 Sum_probs=48.9
Q ss_pred HHHHHHHHcCCcEEEEcCCCCCCCCCccchHHHHHHHHHHhcCCCcEEEecCCCCHHHHHHHHHcC-CCEEEechHHHHH
Q 017718 234 EDARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALG-ASGIFIGRPVVYS 312 (367)
Q Consensus 234 ~~a~~~~~~G~d~i~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~~~via~GGI~~~~dv~kal~lG-Ad~V~ig~~~l~~ 312 (367)
+.|+...++|||.|.+ +++ +++.+.+.++.+.+..++|++++-.-...-++.+.-.+| .+.|..|...+.+
T Consensus 170 ~Ra~ay~eAGAd~i~~--e~~------~~~~~~~~~i~~~~~~~vP~i~n~~~~~~~~~~eL~~lG~v~~v~~~~~~~ra 241 (290)
T 2hjp_A 170 RRGQAYEEAGADAILI--HSR------QKTPDEILAFVKSWPGKVPLVLVPTAYPQLTEADIAALSKVGIVIYGNHAIRA 241 (290)
T ss_dssp HHHHHHHHTTCSEEEE--CCC------CSSSHHHHHHHHHCCCSSCEEECGGGCTTSCHHHHHTCTTEEEEEECSHHHHH
T ss_pred HHHHHHHHcCCcEEEe--CCC------CCCHHHHHHHHHHcCCCCCEEEeccCCCCCCHHHHHhcCCeeEEEechHHHHH
Confidence 4578899999999998 222 345567788888885459999852100112344555699 9999999877764
|
| >2ze3_A DFA0005; organic waste LEFT-OVER decomposition, alkaliphilic, ICL/PEPM superfamily, alpha-ketoglutarate LIG isomerase; HET: AKG; 1.65A {Deinococcus ficus} | Back alignment and structure |
|---|
Probab=83.88 E-value=5.5 Score=36.71 Aligned_cols=64 Identities=22% Similarity=0.346 Sum_probs=47.1
Q ss_pred HHHHHHHcCCcEEEEcCCCCCCCCCccchHHHHHHHHHHhcCCCcEEEec--CCCCHHHHHHHHHcCCCEEEechHHHHH
Q 017718 235 DARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDG--GVRRGTDVFKALALGASGIFIGRPVVYS 312 (367)
Q Consensus 235 ~a~~~~~~G~d~i~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~~~via~G--GI~~~~dv~kal~lGAd~V~ig~~~l~~ 312 (367)
.++...++|||.|.+- +.++.+.+.++.+.+ ++|+-... +..+ +.+.-.+|.+.|..+...+.+
T Consensus 173 Ra~ay~eAGAd~i~~e---------~~~~~~~~~~i~~~~--~~P~n~~~~~~~~~---~~eL~~lGv~~v~~~~~~~ra 238 (275)
T 2ze3_A 173 RGQAYADAGADGIFVP---------LALQSQDIRALADAL--RVPLNVMAFPGSPV---PRALLDAGAARVSFGQSLMLA 238 (275)
T ss_dssp HHHHHHHTTCSEEECT---------TCCCHHHHHHHHHHC--SSCEEEECCTTSCC---HHHHHHTTCSEEECTTHHHHH
T ss_pred HHHHHHHCCCCEEEEC---------CCCCHHHHHHHHHhc--CCCEEEecCCCCCC---HHHHHHcCCcEEEEChHHHHH
Confidence 3678899999999982 245677888888888 68876654 3344 345557999999999877654
|
| >3go2_A Putative L-alanine-DL-glutamate epimerase; structural genomics, isomerase, PSI-2; 1.70A {Burkholderia xenovorans} PDB: 2oo6_A 3sn0_A 3sn1_A* 3sn4_A* | Back alignment and structure |
|---|
Probab=83.68 E-value=7.1 Score=37.89 Aligned_cols=80 Identities=10% Similarity=-0.037 Sum_probs=60.4
Q ss_pred HHHhhc--CCCEEEEec--CCHHH----HHHHHHcCCcEEEEcCCCCCCCCCccchHHHHHHHHHHhcCCCcEEEecCCC
Q 017718 216 WLQTIT--KLPILVKGV--LTAED----ARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVR 287 (367)
Q Consensus 216 ~l~~~~--~~Pv~vK~v--~~~~~----a~~~~~~G~d~i~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~~~via~GGI~ 287 (367)
.+|+.+ +.+|.+..- .+.++ ++.+.+.|++.|-.- ...++.+.++++.+ .+||++++.+.
T Consensus 205 avR~avG~d~~l~vDaN~~~~~~~A~~~~~~L~~~~i~~iE~P----------~~d~~~~~~l~~~~--~iPIa~dE~~~ 272 (409)
T 3go2_A 205 ALRDGAGPDVEILLDLNFNAKPEGYLKILRELADFDLFWVEID----------SYSPQGLAYVRNHS--PHPISSCETLF 272 (409)
T ss_dssp HHHHHHCTTSEEEEECTTCSCHHHHHHHHHHTTTSCCSEEECC----------CSCHHHHHHHHHTC--SSCEEECTTCC
T ss_pred HHHHHhCCCCEEEEECCCCCCHHHHHHHHHHHhhcCCeEEEeC----------cCCHHHHHHHHhhC--CCCEEeCCCcC
Confidence 778776 578888754 45555 445566788877631 12567778887765 79999999999
Q ss_pred CHHHHHHHHHcC-CCEEEech
Q 017718 288 RGTDVFKALALG-ASGIFIGR 307 (367)
Q Consensus 288 ~~~dv~kal~lG-Ad~V~ig~ 307 (367)
+..|+.+++..| +|.|++--
T Consensus 273 ~~~~~~~~i~~~~~d~v~~k~ 293 (409)
T 3go2_A 273 GIREFKPFFDANAVDVAIVDT 293 (409)
T ss_dssp HHHHHHHHHHTTCCSEEEECH
T ss_pred CHHHHHHHHHhCCCCEEEeCC
Confidence 999999999987 79998864
|
| >3v3w_A Starvation sensing protein RSPA; enolase, enzyme function initiative, EFI, lyase; HET: NHE; 1.40A {Cellvibrio japonicus} PDB: 3v4b_A* 4f4r_A 3qkf_A* 3qke_A* 3p93_A* 3ow1_A 3pk7_A* 3rgt_A* 3bsm_A | Back alignment and structure |
|---|
Probab=83.68 E-value=10 Score=36.94 Aligned_cols=82 Identities=9% Similarity=-0.072 Sum_probs=60.4
Q ss_pred HHHhhc--CCCEEEEec--CCHHH----HHHHHHcCCcEEEEcCCCCCCCCCccchHHHHHHHHHHhcCCCcEEEecCCC
Q 017718 216 WLQTIT--KLPILVKGV--LTAED----ARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVR 287 (367)
Q Consensus 216 ~l~~~~--~~Pv~vK~v--~~~~~----a~~~~~~G~d~i~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~~~via~GGI~ 287 (367)
.+|+.+ +.+|.+..- .+.++ ++.+.+.|++.|--- ..+..++.+.++++.+ .+||++++.+.
T Consensus 218 avR~avG~d~~l~vDaN~~~~~~~A~~~~~~L~~~~i~~iEqP--------~~~~d~~~~~~l~~~~--~iPIa~dE~~~ 287 (424)
T 3v3w_A 218 AVRKEFGPDIHLLHDVHHRLTPIEAARLGKALEPYHLFWMEDA--------VPAENQESFKLIRQHT--TTPLAVGEVFN 287 (424)
T ss_dssp HHHHHHCSSSEEEEECTTCCCHHHHHHHHHHHGGGCCSEEECC--------SCCSSTTHHHHHHHHC--CSCEEECTTCC
T ss_pred HHHHHcCCCCcEEEeCCCCCCHHHHHHHHHHHHhcCCCEEECC--------CChHhHHHHHHHHhhC--CCCEEEccCcC
Confidence 778876 578888754 35555 455667788877421 1122456677787776 79999999999
Q ss_pred CHHHHHHHHHcC-CCEEEech
Q 017718 288 RGTDVFKALALG-ASGIFIGR 307 (367)
Q Consensus 288 ~~~dv~kal~lG-Ad~V~ig~ 307 (367)
+..|+.+++..| +|.|++--
T Consensus 288 ~~~~~~~~i~~ga~d~v~~k~ 308 (424)
T 3v3w_A 288 SIHDCRELIQNQWIDYIRTTI 308 (424)
T ss_dssp SGGGTHHHHHTTCCSEECCCT
T ss_pred CHHHHHHHHHcCCCCeEeecc
Confidence 999999999987 79998864
|
| >3lye_A Oxaloacetate acetyl hydrolase; (alpha/beta)8 barrel; 1.30A {Cryphonectria parasitica} PDB: 3m0j_A* 3m0k_A | Back alignment and structure |
|---|
Probab=83.01 E-value=5.9 Score=37.16 Aligned_cols=85 Identities=20% Similarity=0.210 Sum_probs=55.9
Q ss_pred CCCEEEEecCCHHHHHHHHHcCCcEEEEcCCC-C---C-CCCCccchHH-HHHHHHHHhcC---CCcEEEec--CCCCHH
Q 017718 222 KLPILVKGVLTAEDARIAVQAGAAGIIVSNHG-A---R-QLDYVPATIM-ALEEVVKATQG---RIPVFLDG--GVRRGT 290 (367)
Q Consensus 222 ~~Pv~vK~v~~~~~a~~~~~~G~d~i~vs~~g-g---~-~~~~~~~~~~-~l~~i~~~~~~---~~~via~G--GI~~~~ 290 (367)
+.|+++=++-+.-.|+.+.++|+|+|.+|+.+ + . ..|.++.+++ .+..+....+. ++||++|. |..++.
T Consensus 24 ~~~i~~~~a~D~~sA~l~e~aGf~ai~vsG~~~a~s~~G~pD~~~vt~~em~~~~~~i~r~~~~~~PviaD~d~Gyg~~~ 103 (307)
T 3lye_A 24 DELIVCPGVYDGLSARTAMELGFKSLYMTGAGTTASRLGQPDLAIAQLHDMRDNADMIANLDPFGPPLIADMDTGYGGPI 103 (307)
T ss_dssp CCCEEEEEECSHHHHHHHHHTTCSCEEECHHHHHHHHHCCCSSSCSCHHHHHHHHHHHHTSSTTSCCEEEECTTCSSSHH
T ss_pred CCeEEEecCcCHHHHHHHHHcCCCEEEeccHHHHHHhcCCCCCCCCCHHHHHHHHHhhhccCCCCCcEEEECCCCCCCHH
Confidence 45788888899999999999999999997532 1 0 2355554544 33333222221 48999976 544665
Q ss_pred HHH----HHHHcCCCEEEec
Q 017718 291 DVF----KALALGASGIFIG 306 (367)
Q Consensus 291 dv~----kal~lGAd~V~ig 306 (367)
++. +....||.+|.|=
T Consensus 104 ~v~~~v~~l~~aGaagv~iE 123 (307)
T 3lye_A 104 MVARTVEHYIRSGVAGAHLE 123 (307)
T ss_dssp HHHHHHHHHHHTTCCEEEEC
T ss_pred HHHHHHHHHHHcCCeEEEEc
Confidence 544 3445899999774
|
| >1gox_A (S)-2-hydroxy-acid oxidase, peroxisomal; oxidoreductase (oxygen(A)); HET: FMN; 2.00A {Spinacia oleracea} SCOP: c.1.4.1 PDB: 1gyl_A* 1al8_A* 1al7_A* 2cdh_0 | Back alignment and structure |
|---|
Probab=82.91 E-value=5.7 Score=38.10 Aligned_cols=42 Identities=24% Similarity=0.386 Sum_probs=34.5
Q ss_pred hHHHHHHHHHHhcCCCcEEEecCCCCHHHHHHHHHcCCCEEEech
Q 017718 263 TIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFIGR 307 (367)
Q Consensus 263 ~~~~l~~i~~~~~~~~~via~GGI~~~~dv~kal~lGAd~V~ig~ 307 (367)
.++.+.++++.. ++||+. +|+.+.+++.++..+|||+|.++.
T Consensus 213 ~~~~i~~l~~~~--~~pv~v-K~~~~~e~a~~a~~~Gad~I~vs~ 254 (370)
T 1gox_A 213 SWKDVAWLQTIT--SLPILV-KGVITAEDARLAVQHGAAGIIVSN 254 (370)
T ss_dssp CHHHHHHHHHHC--CSCEEE-ECCCSHHHHHHHHHTTCSEEEECC
T ss_pred hHHHHHHHHHHh--CCCEEE-EecCCHHHHHHHHHcCCCEEEECC
Confidence 345677777766 789996 778999999999999999999953
|
| >3o63_A Probable thiamine-phosphate pyrophosphorylase; thiamin biosynthesis, TIM barrel, transferase; 2.35A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=82.56 E-value=11 Score=33.84 Aligned_cols=35 Identities=23% Similarity=0.311 Sum_probs=28.9
Q ss_pred HHHhh--cCCCEEEEecCCHHHHHHHHHcCCcEEEEc
Q 017718 216 WLQTI--TKLPILVKGVLTAEDARIAVQAGAAGIIVS 250 (367)
Q Consensus 216 ~l~~~--~~~Pv~vK~v~~~~~a~~~~~~G~d~i~vs 250 (367)
++++. .++||+.-+..+.+++..+.++|+|+|.|.
T Consensus 183 ~~~~~~~~~iPvvAiGGI~~~ni~~~~~aGa~gvav~ 219 (243)
T 3o63_A 183 VAAELGGDDKPWFAIGGINAQRLPAVLDAGARRIVVV 219 (243)
T ss_dssp HHHTC---CCCEEEESSCCTTTHHHHHHTTCCCEEES
T ss_pred HHHHhccCCCCEEEecCCCHHHHHHHHHcCCCEEEEe
Confidence 55554 479999888789999999999999999983
|
| >3hjz_A Transaldolase B; parachlorococcus, marine, cyanobacteria; HET: MSE; 1.90A {Prochlorococcus marinus str} | Back alignment and structure |
|---|
Probab=82.16 E-value=3.4 Score=39.25 Aligned_cols=91 Identities=11% Similarity=0.051 Sum_probs=61.1
Q ss_pred cCCCEEEEecCCHHHHHHHHHcCCcEEEEc-C---------CCCCCCC-CccchHHHHHHHH---HHhcCCCcEEEecCC
Q 017718 221 TKLPILVKGVLTAEDARIAVQAGAAGIIVS-N---------HGARQLD-YVPATIMALEEVV---KATQGRIPVFLDGGV 286 (367)
Q Consensus 221 ~~~Pv~vK~v~~~~~a~~~~~~G~d~i~vs-~---------~gg~~~~-~~~~~~~~l~~i~---~~~~~~~~via~GGI 286 (367)
-++++-+-.+.+...+..+.++|+.+|... | .|..... ..-+....+.++. +..+.+..|++. .+
T Consensus 153 ~GI~~N~TliFS~~Qa~~aa~AGa~~ISPFVgRi~D~~~~~~g~~~~~~~~d~Gv~~v~~i~~~y~~~g~~T~vl~A-Sf 231 (334)
T 3hjz_A 153 EGIKCNLTLLFNFCQAVTCANANITLISPFVGRILDWHKAKTGKTSFIGAEDPGVISVTQIYKYFKEKGFKTEVMGA-SF 231 (334)
T ss_dssp TTCCEEEESCCSHHHHHHHHHTTCSEECCBHHHHHHHHHHHHCCCCCCGGGCHHHHHHHHHHHHHHHHTCCCEEEEB-CC
T ss_pred CCCcEEEEEeCCHHHHHHHHHcCCcEEEeeccHHHHHhhhccCCcccccccCcHHHHHHHHHHHHHHcCCCCEEEEe-cC
Confidence 489999999999999999999999887642 1 0211110 0012334444444 333335666665 59
Q ss_pred CCHHHHHHHHHcCCCEEEechHHHHHhh
Q 017718 287 RRGTDVFKALALGASGIFIGRPVVYSLA 314 (367)
Q Consensus 287 ~~~~dv~kal~lGAd~V~ig~~~l~~l~ 314 (367)
|+..++.. .+|||.+-|.-.++..+.
T Consensus 232 Rn~~~v~~--laG~d~~Tipp~ll~~L~ 257 (334)
T 3hjz_A 232 RNLDEIKE--LAGCDLLTIAPKFLEELK 257 (334)
T ss_dssp SSHHHHHH--TTTCSEEEECHHHHHHHH
T ss_pred CCHHHHHH--HhCCCEEEcCHHHHHHHH
Confidence 99999997 469999999888776653
|
| >2zc8_A N-acylamino acid racemase; octamer, TIM beta/alpha-barrel, metal-binding, metal binding; 1.95A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=82.13 E-value=14 Score=35.03 Aligned_cols=81 Identities=10% Similarity=0.083 Sum_probs=53.1
Q ss_pred HHHhhc-CCCEEEEec--CC---HHHHHHHHHcCCcEEEEcCCCCCCCCCccchHHHHHHHHHHhcCCCcEEEecCCCCH
Q 017718 216 WLQTIT-KLPILVKGV--LT---AEDARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRG 289 (367)
Q Consensus 216 ~l~~~~-~~Pv~vK~v--~~---~~~a~~~~~~G~d~i~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~~~via~GGI~~~ 289 (367)
.+|+.+ ++++.+--- -+ .+-++.+.+.|++.|-= . ..+..++.+.++++.. .+||.++.-+.+.
T Consensus 175 avr~a~~~~~l~vDan~~~~~~~~~~~~~l~~~~i~~iEq-------P-~~~~d~~~~~~l~~~~--~ipIa~dE~~~~~ 244 (369)
T 2zc8_A 175 AVREAFPEATLTADANSAYSLANLAQLKRLDELRLDYIEQ-------P-LAYDDLLDHAKLQREL--STPICLDESLTGA 244 (369)
T ss_dssp HHHHHCTTSCEEEECTTCCCGGGHHHHHGGGGGCCSCEEC-------C-SCTTCSHHHHHHHHHC--SSCEEESTTCCSH
T ss_pred HHHHHcCCCeEEEecCCCCCHHHHHHHHHHHhCCCcEEEC-------C-CCcccHHHHHHHHhhC--CCCEEEcCccCCH
Confidence 444443 455555422 12 23344455667666541 1 1123566777777766 7999999999999
Q ss_pred HHHHHHHHcC-CCEEEec
Q 017718 290 TDVFKALALG-ASGIFIG 306 (367)
Q Consensus 290 ~dv~kal~lG-Ad~V~ig 306 (367)
.|+.+++..| +|.|++-
T Consensus 245 ~~~~~~i~~~~~d~v~ik 262 (369)
T 2zc8_A 245 EKARKAIELGAGRVFNVK 262 (369)
T ss_dssp HHHHHHHHHTCCSEEEEC
T ss_pred HHHHHHHHhCCCCEEEEc
Confidence 9999999988 8999984
|
| >2qiw_A PEP phosphonomutase; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: P6G; 1.80A {Corynebacterium glutamicum atcc 13032} | Back alignment and structure |
|---|
Probab=82.12 E-value=7.5 Score=35.41 Aligned_cols=83 Identities=22% Similarity=0.265 Sum_probs=56.8
Q ss_pred CCCEEEEecCCHHHHHHHHHcCCcEEEEcCCC-CC---CCCCccchHH----HHHHHHHHhcCCCcEEEecCCCC----H
Q 017718 222 KLPILVKGVLTAEDARIAVQAGAAGIIVSNHG-AR---QLDYVPATIM----ALEEVVKATQGRIPVFLDGGVRR----G 289 (367)
Q Consensus 222 ~~Pv~vK~v~~~~~a~~~~~~G~d~i~vs~~g-g~---~~~~~~~~~~----~l~~i~~~~~~~~~via~GGI~~----~ 289 (367)
+.|+++=++-+.-.|+.+.++|+|+|.+++.+ +. ..|.++-+++ ....|.+.+ ++||++|.-... .
T Consensus 19 ~~~i~~~~ayD~~sA~~~~~aG~dai~vg~~s~a~~~G~pD~~~vt~~em~~~~~~I~r~~--~~pviaD~~~Gyg~~~~ 96 (255)
T 2qiw_A 19 GKLLVLPTVWDTWSAGLVEEAGFSGLTIGSHPVADATGSSDGENMNFADYMAVVKKITSAV--SIPVSVDVESGYGLSPA 96 (255)
T ss_dssp CCCEECCEESSHHHHHHHHHTTCSCEEECHHHHHHHTTCCTTTCSCHHHHHHHHHHHHHHC--SSCEEEECTTCTTCCHH
T ss_pred CCcEEEecCcCHHHHHHHHHcCCCEEEEChHHHHHhCCCCCCCCcCHHHHHHHHHHHHhcC--CCCEEeccCCCcCcHHH
Confidence 56888878888999999999999999997521 10 1344444443 344454544 699999763322 4
Q ss_pred HHHHHHHHcCCCEEEec
Q 017718 290 TDVFKALALGASGIFIG 306 (367)
Q Consensus 290 ~dv~kal~lGAd~V~ig 306 (367)
..+.+.+..||++|.|=
T Consensus 97 ~~~~~l~~aGa~gv~iE 113 (255)
T 2qiw_A 97 DLIAQILEAGAVGINVE 113 (255)
T ss_dssp HHHHHHHHTTCCEEEEC
T ss_pred HHHHHHHHcCCcEEEEC
Confidence 45667777999999873
|
| >1r0m_A N-acylamino acid racemase; isomerase; 1.30A {Deinococcus radiodurans} SCOP: c.1.11.2 d.54.1.1 PDB: 1xpy_A* 1xs2_A 2ggj_A 2ggi_A 2ggh_A* 2ggg_A* 2fkp_A | Back alignment and structure |
|---|
Probab=82.07 E-value=13 Score=35.36 Aligned_cols=81 Identities=25% Similarity=0.214 Sum_probs=53.4
Q ss_pred HHHhhc-CCCEEEEec--CC---HHHHHHHHHcCCcEEEEcCCCCCCCCCccchHHHHHHHHHHhcCCCcEEEecCCCCH
Q 017718 216 WLQTIT-KLPILVKGV--LT---AEDARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRG 289 (367)
Q Consensus 216 ~l~~~~-~~Pv~vK~v--~~---~~~a~~~~~~G~d~i~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~~~via~GGI~~~ 289 (367)
.+|+.+ ++++.+.-- -+ .+-++.+.+.|++.|- +. ..+..++.+.++++.. .+||.++..+.+.
T Consensus 182 avr~a~~~~~l~vDan~~~~~~~~~~~~~l~~~~i~~iE-------qP-~~~~d~~~~~~l~~~~--~ipIa~dE~~~~~ 251 (375)
T 1r0m_A 182 ATREAFPDIRLTVDANSAYTLADAGRLRQLDEYDLTYIE-------QP-LAWDDLVDHAELARRI--RTPLCLDESVASA 251 (375)
T ss_dssp HHHHHCTTSCEEEECTTCCCGGGHHHHHTTGGGCCSCEE-------CC-SCTTCSHHHHHHHHHC--SSCEEESTTCCSH
T ss_pred HHHHHcCCCeEEEeCCCCCCHHHHHHHHHHHhCCCcEEE-------CC-CCcccHHHHHHHHHhC--CCCEEecCccCCH
Confidence 444443 455655532 12 2334445566766653 11 1123566777787766 7999999999999
Q ss_pred HHHHHHHHcC-CCEEEec
Q 017718 290 TDVFKALALG-ASGIFIG 306 (367)
Q Consensus 290 ~dv~kal~lG-Ad~V~ig 306 (367)
.|+.+++..| +|.|++-
T Consensus 252 ~~~~~~i~~~~~d~v~ik 269 (375)
T 1r0m_A 252 SDARKALALGAGGVINLK 269 (375)
T ss_dssp HHHHHHHHHTSCSEEEEC
T ss_pred HHHHHHHHhCCCCEEEEC
Confidence 9999999987 8999983
|
| >2fli_A Ribulose-phosphate 3-epimerase; (beta/alpha)8-barrel, D- xylitol 5-phosphate, isomerase; HET: DX5; 1.80A {Streptococcus pyogenes} SCOP: c.1.2.2 | Back alignment and structure |
|---|
Probab=81.94 E-value=2.8 Score=36.57 Aligned_cols=70 Identities=11% Similarity=0.005 Sum_probs=47.1
Q ss_pred HHHHHHHHHcCCcEEEEcCCCCC---CCCCccchHHHHHHHHHHhcCCCcEEEecCCCCHHH-HHHHHHcCCCEEEech
Q 017718 233 AEDARIAVQAGAAGIIVSNHGAR---QLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTD-VFKALALGASGIFIGR 307 (367)
Q Consensus 233 ~~~a~~~~~~G~d~i~vs~~gg~---~~~~~~~~~~~l~~i~~~~~~~~~via~GGI~~~~d-v~kal~lGAd~V~ig~ 307 (367)
.+.++.+.+.|+|.+-+.---|. ....+ .+.+.++++.+ +.|+.+.+.|.+..+ +..+..+|||.|.+..
T Consensus 19 ~~~~~~~~~~G~~~i~~~~~dg~~~~~~~~g---~~~i~~i~~~~--~~~~~v~l~v~d~~~~i~~~~~~gad~v~vh~ 92 (220)
T 2fli_A 19 ASELARIEETDAEYVHIDIMDGQFVPNISFG---ADVVASMRKHS--KLVFDCHLMVVDPERYVEAFAQAGADIMTIHT 92 (220)
T ss_dssp HHHHHHHHHTTCCEEEEEEEBSSSSSCBCBC---HHHHHHHHTTC--CSEEEEEEESSSGGGGHHHHHHHTCSEEEEEG
T ss_pred HHHHHHHHHcCCCEEEEEeecCCCCCccccC---HHHHHHHHHhC--CCCEEEEEeecCHHHHHHHHHHcCCCEEEEcc
Confidence 36688889999998655311111 11112 45566665544 679999999998864 6666679999999864
|
| >3e96_A Dihydrodipicolinate synthase; structural genomics, nysgrc, target 9375C, operon, PSI-2; 1.80A {Bacillus clausii ksm-k16} SCOP: c.1.10.0 | Back alignment and structure |
|---|
Probab=81.90 E-value=33 Score=31.89 Aligned_cols=180 Identities=16% Similarity=0.096 Sum_probs=97.4
Q ss_pred ceEeCcccc-hhccCChhhHHHHHHHHHcCCceee--c---CCCCCCHHHHH-------hh-CC-CceEEEEeecCCHHH
Q 017718 73 PIMIAPTAM-QKMAHPEGEYATARAASAAGTIMTL--S---SWSTSSVEEVA-------ST-GP-GIRFFQLYVYKDRNV 137 (367)
Q Consensus 73 Pi~iAPm~~-~~l~~~~~e~~~a~aa~~~G~~~~v--s---~~~~~~~e~i~-------~~-~~-~~~~~QLy~~~d~~~ 137 (367)
|.++.|+.- .+-.+.+.-..+.+-.-+.|+...+ | +..+.+.+|-. +. .. -|.+...- .+-+.
T Consensus 17 ~a~vTPf~~~dg~iD~~~l~~lv~~li~~Gv~Gl~v~GtTGE~~~Ls~eEr~~v~~~~v~~~~grvpViaGvg--~~t~~ 94 (316)
T 3e96_A 17 GIPITPFRKSDGSIDWHHYKETVDRIVDNGIDVIVPCGNTSEFYALSLEEAKEEVRRTVEYVHGRALVVAGIG--YATST 94 (316)
T ss_dssp ECCCCCBCTTTCCBCHHHHHHHHHHHHTTTCCEECTTSGGGTGGGSCHHHHHHHHHHHHHHHTTSSEEEEEEC--SSHHH
T ss_pred EeeeCCccCCCCCCCHHHHHHHHHHHHHcCCCEEEeCccccCcccCCHHHHHHHHHHHHHHhCCCCcEEEEeC--cCHHH
Confidence 455677643 3333333334666667778876543 2 33556666522 22 22 45666663 37777
Q ss_pred HHHHHHHHHHcCCcEEEEecCCCCCCchhHHhhhhcCCCCccccccccccccCccccccchhhHHHhhhccCccccHHHH
Q 017718 138 VAQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLTLKNFQGLDLGKMDEANDSGLAAYVAGQIDRSLSWKWL 217 (367)
Q Consensus 138 ~~~~l~ra~~~G~~ai~itvd~p~~g~r~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~l 217 (367)
..++.+.|+++|++++.+. .|.. ++ | + ..++.+ .++.|
T Consensus 95 ai~la~~A~~~Gadavlv~--~P~y-~~----------~---s----------------~~~l~~----------~f~~v 132 (316)
T 3e96_A 95 AIELGNAAKAAGADAVMIH--MPIH-PY----------V---T----------------AGGVYA----------YFRDI 132 (316)
T ss_dssp HHHHHHHHHHHTCSEEEEC--CCCC-SC----------C---C----------------HHHHHH----------HHHHH
T ss_pred HHHHHHHHHhcCCCEEEEc--CCCC-CC----------C---C----------------HHHHHH----------HHHHH
Confidence 7788999999999999873 3432 00 0 0 001111 12467
Q ss_pred HhhcCCCEEEEec---CCHHHHHHHHHcC-CcEEEEcCCCCCCCCCccchHHHHHHHHHHhcC-CCcEEEecCCCCHHHH
Q 017718 218 QTITKLPILVKGV---LTAEDARIAVQAG-AAGIIVSNHGARQLDYVPATIMALEEVVKATQG-RIPVFLDGGVRRGTDV 292 (367)
Q Consensus 218 ~~~~~~Pv~vK~v---~~~~~a~~~~~~G-~d~i~vs~~gg~~~~~~~~~~~~l~~i~~~~~~-~~~via~GGI~~~~dv 292 (367)
.+.+++||++=.+ .+++...++.+.. +-+|--+ . ..+..+.++.+..++ ++.-+.+|.=. .-+
T Consensus 133 a~a~~lPiilYn~g~~l~~~~~~~La~~pnIvgiKds---------s-gd~~~~~~~~~~~~~~~f~~v~~G~d~--~~~ 200 (316)
T 3e96_A 133 IEALDFPSLVYFKDPEISDRVLVDLAPLQNLVGVKYA---------I-NDLPRFAKVVRSIPEEHQIAWICGTAE--KWA 200 (316)
T ss_dssp HHHHTSCEEEEECCTTSCTHHHHHHTTCTTEEEEEEC---------C-CCHHHHHHHHTTSCGGGCCEEEETTCT--TTH
T ss_pred HHhCCCCEEEEeCCCCCCHHHHHHHHcCCCEEEEEeC---------C-CCHHHHHHHHHhcCCCCceEEEeCChH--HHH
Confidence 6778999998763 5677777776543 1122211 1 133444455444432 34313344210 113
Q ss_pred HHHHHcCCCEEEechH
Q 017718 293 FKALALGASGIFIGRP 308 (367)
Q Consensus 293 ~kal~lGAd~V~ig~~ 308 (367)
...+++||+++.-+..
T Consensus 201 ~~~l~~G~~G~is~~a 216 (316)
T 3e96_A 201 PFFWHAGAKGFTSGLV 216 (316)
T ss_dssp HHHHHHTCCEEEESGG
T ss_pred HHHHHCCCCEEEechh
Confidence 3467899999998874
|
| >1f8m_A Isocitrate lyase, ICL; alpha-beta barrel, helix-swapping, closed conformation, bromopyuvate modification, structural genomics; 1.80A {Mycobacterium tuberculosis H37RV} SCOP: c.1.12.7 PDB: 1f61_A 1f8i_A | Back alignment and structure |
|---|
Probab=81.62 E-value=10 Score=37.14 Aligned_cols=86 Identities=23% Similarity=0.238 Sum_probs=57.6
Q ss_pred CCCEEEEecCCHHHHHHHHHcCCcEEEEcCCC--------CC-CCCCccc----hHHHHHHHHHHhc-------------
Q 017718 222 KLPILVKGVLTAEDARIAVQAGAAGIIVSNHG--------AR-QLDYVPA----TIMALEEVVKATQ------------- 275 (367)
Q Consensus 222 ~~Pv~vK~v~~~~~a~~~~~~G~d~i~vs~~g--------g~-~~~~~~~----~~~~l~~i~~~~~------------- 275 (367)
+.|+.+=++.+.-.|+.+.++|.++|.+|+.+ +. ..|.+.- ..+.+.+|.+.+.
T Consensus 64 ~~~~~~~ga~d~~sA~~~~~aGf~Aiy~SG~~vAa~~~~s~~G~PD~~~~~~~ev~~~v~~I~~a~~~~d~~~~~~~~~~ 143 (429)
T 1f8m_A 64 LEWVNALGALTGNMAVQQVRAGLKAIYLSGWQVAGDANLSGHTYPDQSLYPANSVPQVVRRINNALQRADQIAKIEGDTS 143 (429)
T ss_dssp SSCEEEEBCCSHHHHHHHHHTTCSCEEECHHHHHHHCCTTCCCCCSSSCSCTTHHHHHHHHHHHHHHHHHHHHHHHTCCS
T ss_pred CCceecCCCCCHHHHHHHHHcCCCEEEechHHHhcccccccCCCCCcccCCHHHHHHHHHHHHHHHHHHHHHHHhhccCc
Confidence 35787888899999999999999999998642 11 1233322 3344556655541
Q ss_pred --C-CCcEEEec--CCCCHHHHH----HHHHcCCCEEEech
Q 017718 276 --G-RIPVFLDG--GVRRGTDVF----KALALGASGIFIGR 307 (367)
Q Consensus 276 --~-~~~via~G--GI~~~~dv~----kal~lGAd~V~ig~ 307 (367)
+ .+|||+|+ |..+...+. +++.+||.+|.|=-
T Consensus 144 ~~d~~~PIiaD~DtGfG~~~nv~~tvk~~i~AGaaGi~IED 184 (429)
T 1f8m_A 144 VENWLAPIVADGEAGFGGALNVYELQKALIAAGVAGSHWED 184 (429)
T ss_dssp CSCSSCCEEEECTTTTSSHHHHHHHHHHHHHTTCSEEEEEC
T ss_pred cccCCCCEEEECCCCCCCcHHHHHHHHHHHHcCCEEEEEec
Confidence 1 38999976 665655443 34558999998864
|
| >2pcq_A Putative dihydrodipicolinate synthase; lyase, lysine biosynthesis, dihydrodipicoliante, S genomics, NPPSFA; 2.10A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=81.61 E-value=2.4 Score=39.16 Aligned_cols=89 Identities=19% Similarity=0.141 Sum_probs=51.2
Q ss_pred HHHHHHcCCcEEEEcCCCCCCCCCccchHHHHHHHHHHhcCCCcEEEecCCCCHHHHHH----HHHcCCCEEEechHHHH
Q 017718 236 ARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFK----ALALGASGIFIGRPVVY 311 (367)
Q Consensus 236 a~~~~~~G~d~i~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~~~via~GGI~~~~dv~k----al~lGAd~V~ig~~~l~ 311 (367)
++.+.+. +|+|++.|+.|- ....+.-+- .++.+.+..++|||+--|=.+-.++++ +-.+|||++++-.|+.+
T Consensus 25 v~~li~~-v~gl~v~GttGE--~~~Ls~~Er-~~v~~~~~~rvpviaGvg~~~t~~ai~la~~A~~~Gadavlv~~P~y~ 100 (283)
T 2pcq_A 25 AQALEPL-VDGLLVYGSNGE--GVHLTPEER-ARGLRALRPRKPFLVGLMEETLPQAEGALLEAKAAGAMALLATPPRYY 100 (283)
T ss_dssp HHHHGGG-SSCCEETCTTTT--GGGSCHHHH-HHHHHTCCCSSCCEEEECCSSHHHHHHHHHHHHHHTCSEEEECCCCTT
T ss_pred HHHHHhh-CCEEEECCcCcC--chhcCHHHH-HHHHHHHHhCCcEEEeCCCCCHHHHHHHHHHHHhcCCCEEEecCCcCC
Confidence 4556778 999999664432 112222222 233333323899887444444444443 33479999999999876
Q ss_pred HhhccChHHHHHHHHHHHH
Q 017718 312 SLAAEGEKGVRRVLEMLRE 330 (367)
Q Consensus 312 ~l~~~G~~~v~~~i~~l~~ 330 (367)
... .++++.++++.+.+
T Consensus 101 ~~~--~~~~l~~~f~~va~ 117 (283)
T 2pcq_A 101 HGS--LGAGLLRYYEALAE 117 (283)
T ss_dssp GGG--TTTHHHHHHHHHHH
T ss_pred CCC--CHHHHHHHHHHHhc
Confidence 531 34566555555543
|
| >2cu0_A Inosine-5'-monophosphate dehydrogenase; structural genomics, pyrococcus horikoshii OT3, riken structural genomics/PROT initiative, RSGI; HET: XMP; 2.10A {Pyrococcus horikoshii} SCOP: c.1.5.1 | Back alignment and structure |
|---|
Probab=81.49 E-value=1.7 Score=43.34 Aligned_cols=65 Identities=18% Similarity=0.167 Sum_probs=47.8
Q ss_pred HHHHHHHHHcCCcEEEEcCCCCCCCCCccchHHHHHHHHHHhcCCCcEEEecCCCCHHHHHHHHHcCCCEEEec
Q 017718 233 AEDARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFIG 306 (367)
Q Consensus 233 ~~~a~~~~~~G~d~i~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~~~via~GGI~~~~dv~kal~lGAd~V~ig 306 (367)
.+.+..+.++|+|.+++++.+|+. ...++.+..+++.. .+|++ .|+|.+.+++..++ |||+|.+|
T Consensus 230 ~~~a~~l~~~gvd~lvvdta~G~~----~~~L~~I~~l~~~~--~vpvi-~k~v~~~~~a~~l~--G~d~v~vg 294 (486)
T 2cu0_A 230 IKRAIELDKAGVDVIVVDTAHAHN----LKAIKSMKEMRQKV--DADFI-VGNIANPKAVDDLT--FADAVKVG 294 (486)
T ss_dssp HHHHHHHHHTTCSEEEEECSCCCC----HHHHHHHHHHHHTC--CSEEE-EEEECCHHHHTTCT--TSSEEEEC
T ss_pred HHHHHHHHHhcCCceEEEecCCcE----eehhhHHHHHHHHh--CCccc-cCCcCCHHHHHHhh--CCCeEEEe
Confidence 467888999999999997644431 12445566666654 78997 58898998876666 99999984
|
| >1m3u_A 3-methyl-2-oxobutanoate hydroxymethyltransferase; beta-alpha-barrel, TIM-barrel, ketopantoate, selenomethionin decamer; HET: KPL; 1.80A {Escherichia coli} SCOP: c.1.12.8 | Back alignment and structure |
|---|
Probab=81.46 E-value=9 Score=35.10 Aligned_cols=83 Identities=14% Similarity=0.125 Sum_probs=57.2
Q ss_pred CCCEEEEecCCHHHHHHHHHcCCcEEEEcCCCCC----CCCCccchHHH-H---HHHHHHhcCCCcEEEecCCC---CHH
Q 017718 222 KLPILVKGVLTAEDARIAVQAGAAGIIVSNHGAR----QLDYVPATIMA-L---EEVVKATQGRIPVFLDGGVR---RGT 290 (367)
Q Consensus 222 ~~Pv~vK~v~~~~~a~~~~~~G~d~i~vs~~gg~----~~~~~~~~~~~-l---~~i~~~~~~~~~via~GGI~---~~~ 290 (367)
+-|+++=..-+.-.|+.+.++|+|.|.+....+. ..|..+-+++- + +.+.+.. ...+|++|=+.. +++
T Consensus 16 g~~i~~~tayD~~sA~l~e~aG~d~ilvGdsl~~~~lG~~dt~~vtldemi~h~~aV~r~~-~~~~vvaD~pfgsy~~~~ 94 (264)
T 1m3u_A 16 KKRFATITAYDYSFAKLFADEGLNVMLVGDSLGMTVQGHDSTLPVTVADIAYHTAAVRRGA-PNCLLLADLPFMAYATPE 94 (264)
T ss_dssp TCCEEEEECCSHHHHHHHHHHTCCEEEECTTHHHHTTCCSSSTTCCHHHHHHHHHHHHHHC-TTSEEEEECCTTSSSSHH
T ss_pred CCcEEEEeCcCHHHHHHHHHcCCCEEEECHHHHHHHcCCCCCCCcCHHHHHHHHHHHHhhC-CCCcEEEECCCCCcCCHH
Confidence 5689888888999999999999999998432221 12344444443 3 3344433 245788876665 787
Q ss_pred HHH----HHHHcCCCEEEe
Q 017718 291 DVF----KALALGASGIFI 305 (367)
Q Consensus 291 dv~----kal~lGAd~V~i 305 (367)
+++ +.+..||++|-|
T Consensus 95 ~a~~~a~rl~kaGa~aVkl 113 (264)
T 1m3u_A 95 QAFENAATVMRAGANMVKI 113 (264)
T ss_dssp HHHHHHHHHHHTTCSEEEC
T ss_pred HHHHHHHHHHHcCCCEEEE
Confidence 777 477799999988
|
| >1o66_A 3-methyl-2-oxobutanoate hydroxymethyltransferase; structural genomics; HET: MSE; 1.75A {Neisseria meningitidis serogroup B} SCOP: c.1.12.8 PDB: 1o68_A* | Back alignment and structure |
|---|
Probab=81.45 E-value=10 Score=34.90 Aligned_cols=83 Identities=16% Similarity=0.158 Sum_probs=56.0
Q ss_pred CCCEEEEecCCHHHHHHHHHcCCcEEEEcCCCCC----CCCCccchHHH-H---HHHHHHhcCCCcEEEecCC----CCH
Q 017718 222 KLPILVKGVLTAEDARIAVQAGAAGIIVSNHGAR----QLDYVPATIMA-L---EEVVKATQGRIPVFLDGGV----RRG 289 (367)
Q Consensus 222 ~~Pv~vK~v~~~~~a~~~~~~G~d~i~vs~~gg~----~~~~~~~~~~~-l---~~i~~~~~~~~~via~GGI----~~~ 289 (367)
+-|+++=..-+.-.|+.+.++|+|.|.+....+. ..|..+-+++- + +.+.+.. ...+|++|=+. .++
T Consensus 16 g~~i~~~tayDa~sA~l~e~aG~d~ilvGdSl~~~~lG~~dt~~vTldemi~h~~aV~r~~-~~~~vvaD~pfgsy~~s~ 94 (275)
T 1o66_A 16 GEKIAMLTAYESSFAALMDDAGVEMLLVGDSLGMAVQGRKSTLPVSLRDMCYHTECVARGA-KNAMIVSDLPFGAYQQSK 94 (275)
T ss_dssp TCCEEEEECCSHHHHHHHHHTTCCEEEECTTHHHHTTCCSSSTTCCHHHHHHHHHHHHHHC-SSSEEEEECCTTSSSSCH
T ss_pred CCcEEEEeCcCHHHHHHHHHcCCCEEEECHHHHHHHcCCCCCCCCCHHHHHHHHHHHHhhC-CCCeEEEECCCCCccCCH
Confidence 5689888888999999999999999976432221 12344444443 3 3344433 24578888555 367
Q ss_pred HHHH----HHHHcCCCEEEe
Q 017718 290 TDVF----KALALGASGIFI 305 (367)
Q Consensus 290 ~dv~----kal~lGAd~V~i 305 (367)
++++ +.+..||++|-|
T Consensus 95 ~~a~~na~rl~kaGa~aVkl 114 (275)
T 1o66_A 95 EQAFAAAAELMAAGAHMVKL 114 (275)
T ss_dssp HHHHHHHHHHHHTTCSEEEE
T ss_pred HHHHHHHHHHHHcCCcEEEE
Confidence 7777 477799999988
|
| >3noy_A 4-hydroxy-3-methylbut-2-EN-1-YL diphosphate synth; iron-sulfur protein, non-mevalonate pathway, terpene biosynt isoprenoid biosynthesis; 2.70A {Aquifex aeolicus} | Back alignment and structure |
|---|
Probab=81.40 E-value=15 Score=35.01 Aligned_cols=84 Identities=26% Similarity=0.329 Sum_probs=0.0
Q ss_pred CHHHHHHHHHcCCcEEEEcCCCCCCCCCccchHHHHHHHHHHhcCCCcEEEecCC-CCHHHHHHHHHcCCCEEEechHHH
Q 017718 232 TAEDARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGV-RRGTDVFKALALGASGIFIGRPVV 310 (367)
Q Consensus 232 ~~~~a~~~~~~G~d~i~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~~~via~GGI-~~~~dv~kal~lGAd~V~ig~~~l 310 (367)
+.+.+..+.++|+|.|.++- ......+.+++|++.. .+|+++| | .++.-+++++..|+|.+=|----+
T Consensus 48 tv~Qi~~l~~aG~diVRvav-------p~~~~a~al~~I~~~~--~vPlvaD--iHf~~~lal~a~e~G~dklRINPGNi 116 (366)
T 3noy_A 48 TLNQIKRLYEAGCEIVRVAV-------PHKEDVEALEEIVKKS--PMPVIAD--IHFAPSYAFLSMEKGVHGIRINPGNI 116 (366)
T ss_dssp HHHHHHHHHHTTCCEEEEEC-------CSHHHHHHHHHHHHHC--SSCEEEE--CCSCHHHHHHHHHTTCSEEEECHHHH
T ss_pred HHHHHHHHHHcCCCEEEeCC-------CChHHHHHHHHHHhcC--CCCEEEe--CCCCHHHHHHHHHhCCCeEEECCccc
Q ss_pred HHhhccChHHHHHHHHHHHHH
Q 017718 311 YSLAAEGEKGVRRVLEMLREE 331 (367)
Q Consensus 311 ~~l~~~G~~~v~~~i~~l~~e 331 (367)
++.+.+..+++..++.
T Consensus 117 -----g~~~~~~~vv~~ak~~ 132 (366)
T 3noy_A 117 -----GKEEIVREIVEEAKRR 132 (366)
T ss_dssp -----SCHHHHHHHHHHHHHH
T ss_pred -----CchhHHHHHHHHHHHc
|
| >3sgz_A Hydroxyacid oxidase 2; flavoprotein, homology, INH oxidoreductase-oxidoreductase inhibitor complex; HET: FMN HO6; 1.35A {Rattus norvegicus} PDB: 1tb3_A* | Back alignment and structure |
|---|
Probab=81.32 E-value=4.7 Score=38.60 Aligned_cols=42 Identities=24% Similarity=0.341 Sum_probs=35.7
Q ss_pred chHHHHHHHHHHhcCCCcEEEecCCCCHHHHHHHHHcCCCEEEec
Q 017718 262 ATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFIG 306 (367)
Q Consensus 262 ~~~~~l~~i~~~~~~~~~via~GGI~~~~dv~kal~lGAd~V~ig 306 (367)
.+++.+..+++.. ++||++-| +.+.+|+.++..+|||+|.+.
T Consensus 204 ~~w~~i~~lr~~~--~~PvivK~-v~~~e~A~~a~~~GaD~I~vs 245 (352)
T 3sgz_A 204 FCWNDLSLLQSIT--RLPIILKG-ILTKEDAELAMKHNVQGIVVS 245 (352)
T ss_dssp CCHHHHHHHHHHC--CSCEEEEE-ECSHHHHHHHHHTTCSEEEEC
T ss_pred CCHHHHHHHHHhc--CCCEEEEe-cCcHHHHHHHHHcCCCEEEEe
Confidence 4678888888876 78998854 789999999999999999984
|
| >3gd6_A Muconate cycloisomerase; structural genomics, NYSGXRC, target 9375A, divergent enolase, lyase, PSI-2; 1.60A {Oceanobacillus iheyensis HTE831} PDB: 2oqy_A 3es8_A 3es7_A 3fyy_A 3hpf_A* | Back alignment and structure |
|---|
Probab=80.86 E-value=15 Score=35.22 Aligned_cols=119 Identities=15% Similarity=0.065 Sum_probs=78.4
Q ss_pred CCHHHHHHHHHHHHHcCCcEEEEecCCCCCCchhHHhhhhcCCCCccccccccccccCccccccchhhHHHhhhccCccc
Q 017718 133 KDRNVVAQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLTLKNFQGLDLGKMDEANDSGLAAYVAGQIDRSL 212 (367)
Q Consensus 133 ~d~~~~~~~l~ra~~~G~~ai~itvd~p~~g~r~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~ 212 (367)
.+++.+.+.++++.+.|++++=+.+++.. +.|+.
T Consensus 141 ~~~e~~~~~a~~~~~~G~~~~KiKvG~~~----~~d~~------------------------------------------ 174 (391)
T 3gd6_A 141 EEVESNLDVVRQKLEQGFDVFRLYVGKNL----DADEE------------------------------------------ 174 (391)
T ss_dssp THHHHHHHHHHHHHHTTCCEEEEECSSCH----HHHHH------------------------------------------
T ss_pred CCHHHHHHHHHHHHHcCCCEEEEeeCCCH----HHHHH------------------------------------------
Confidence 45677777777777889999877665310 00000
Q ss_pred cHHHHHhhc--CCCEE-EEec--CCHHHH----HHHHHcCC--cEEEEcCCCCCCCCCccchHHHHHHHHHHhcCCCcEE
Q 017718 213 SWKWLQTIT--KLPIL-VKGV--LTAEDA----RIAVQAGA--AGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVF 281 (367)
Q Consensus 213 ~~~~l~~~~--~~Pv~-vK~v--~~~~~a----~~~~~~G~--d~i~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~~~vi 281 (367)
..+.+|+.+ ++++. +..- .+.++| +.+.+.|+ +.|- + ...+..++.+.++++.+ .+||
T Consensus 175 ~v~avR~a~g~~~~l~~vDan~~~~~~~A~~~~~~l~~~~i~~~~iE-------q-P~~~~d~~~~~~l~~~~--~iPI- 243 (391)
T 3gd6_A 175 FLSRVKEEFGSRVRIKSYDFSHLLNWKDAHRAIKRLTKYDLGLEMIE-------S-PAPRNDFDGLYQLRLKT--DYPI- 243 (391)
T ss_dssp HHHHHHHHHGGGCEEEEEECTTCSCHHHHHHHHHHHTTCCSSCCEEE-------C-CSCTTCHHHHHHHHHHC--SSCE-
T ss_pred HHHHHHHHcCCCCcEEEecCCCCcCHHHHHHHHHHHHhcCCCcceec-------C-CCChhhHHHHHHHHHHc--CCCc-
Confidence 122566665 46777 6543 355554 45666777 6553 1 11223577888888776 7998
Q ss_pred EecCCCCHHHHHHHHHcC-CCEEEechHH
Q 017718 282 LDGGVRRGTDVFKALALG-ASGIFIGRPV 309 (367)
Q Consensus 282 a~GGI~~~~dv~kal~lG-Ad~V~ig~~~ 309 (367)
+..+.+..|+.+++..| +|.|++--..
T Consensus 244 -dE~~~~~~~~~~~~~~~~~d~v~~k~~~ 271 (391)
T 3gd6_A 244 -SEHVWSFKQQQEMIKKDAIDIFNISPVF 271 (391)
T ss_dssp -EEECCCHHHHHHHHHHTCCSEEEECHHH
T ss_pred -CCCCCCHHHHHHHHHcCCCCEEEECchh
Confidence 88999999999999987 7999988644
|
| >3bw2_A 2-nitropropane dioxygenase; TIM barrel, oxidoreductase; HET: FMN; 2.10A {Streptomyces ansochromogenes} PDB: 3bw4_A* 3bw3_A* | Back alignment and structure |
|---|
Probab=80.78 E-value=7.5 Score=37.04 Aligned_cols=60 Identities=7% Similarity=0.052 Sum_probs=45.0
Q ss_pred HHHHHHHHHcCCcEEEEcCCCCCCCCCccchHHHHHHHHHHhcCCCcEEEecCCCCHHHHHHHHHcCCCEEEe
Q 017718 233 AEDARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFI 305 (367)
Q Consensus 233 ~~~a~~~~~~G~d~i~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~~~via~GGI~~~~dv~kal~lGAd~V~i 305 (367)
.+.++.+.+.|+|.|.+ |+|. +..+.+.++++ . .++|+. .+.+.+++.++...|+|+|.+
T Consensus 112 ~~~~~~~~~~g~~~V~~--~~g~------~~~~~i~~~~~-~--g~~v~~--~v~t~~~a~~a~~~GaD~i~v 171 (369)
T 3bw2_A 112 DAKLAVLLDDPVPVVSF--HFGV------PDREVIARLRR-A--GTLTLV--TATTPEEARAVEAAGADAVIA 171 (369)
T ss_dssp HHHHHHHHHSCCSEEEE--ESSC------CCHHHHHHHHH-T--TCEEEE--EESSHHHHHHHHHTTCSEEEE
T ss_pred HHHHHHHHhcCCCEEEE--eCCC------CcHHHHHHHHH-C--CCeEEE--ECCCHHHHHHHHHcCCCEEEE
Confidence 45688899999999988 3331 23456666554 2 567776 478999999999999999998
|
| >3vkj_A Isopentenyl-diphosphate delta-isomerase; type 2 isopentenyl diphosphate isomerase; HET: FNR; 1.70A {Sulfolobus shibatae} PDB: 2zrv_A* 2zrw_A* 2zrx_A* 2zry_A* 2zrz_A* 3b03_A* 3b04_A* 3b05_A* 3b06_A* 2zru_A* | Back alignment and structure |
|---|
Probab=80.74 E-value=4.2 Score=39.14 Aligned_cols=88 Identities=15% Similarity=0.167 Sum_probs=55.9
Q ss_pred HHhhc-CCCEEEEec-------CCHHHHHHHH-HcCCcEEEEcCCCCC---CCCC----ccchHHHHHHHHHHhcCCCcE
Q 017718 217 LQTIT-KLPILVKGV-------LTAEDARIAV-QAGAAGIIVSNHGAR---QLDY----VPATIMALEEVVKATQGRIPV 280 (367)
Q Consensus 217 l~~~~-~~Pv~vK~v-------~~~~~a~~~~-~~G~d~i~vs~~gg~---~~~~----~~~~~~~l~~i~~~~~~~~~v 280 (367)
+|+.. +.|++.-.. .+.+.++.+. ..+++++.++-.... +..+ ....++.|.++++.+ ++||
T Consensus 113 vr~~ap~~~~~anlg~~ql~~~~~~~~~~~av~~~~a~al~Ihln~~~~~~~p~g~~~~~~~~~~~i~~i~~~~--~vPV 190 (368)
T 3vkj_A 113 VRKVAPTIPIIANLGMPQLVKGYGLKEFQDAIQMIEADAIAVHLNPAQEVFQPEGEPEYQIYALEKLRDISKEL--SVPI 190 (368)
T ss_dssp HHHHCSSSCEEEEEEGGGGGTTCCHHHHHHHHHHTTCSEEEEECCHHHHHHSSSCCCBCBTHHHHHHHHHHTTC--SSCE
T ss_pred HHHhCcCcceecCcCeeecCCCCCHHHHHHHHHHhcCCCeEEEecchhhhhCCCCCchhhHHHHHHHHHHHHHc--CCCE
Confidence 55433 567765332 2456766544 467888887521110 0011 112567777777665 7999
Q ss_pred EEe--cCCCCHHHHHHHHHcCCCEEEec
Q 017718 281 FLD--GGVRRGTDVFKALALGASGIFIG 306 (367)
Q Consensus 281 ia~--GGI~~~~dv~kal~lGAd~V~ig 306 (367)
++- |+-.+++++.++..+|||+|.++
T Consensus 191 ivK~vG~g~s~~~A~~l~~aGad~I~V~ 218 (368)
T 3vkj_A 191 IVKESGNGISMETAKLLYSYGIKNFDTS 218 (368)
T ss_dssp EEECSSSCCCHHHHHHHHHTTCCEEECC
T ss_pred EEEeCCCCCCHHHHHHHHhCCCCEEEEe
Confidence 995 65578999999999999999983
|
| >2ze3_A DFA0005; organic waste LEFT-OVER decomposition, alkaliphilic, ICL/PEPM superfamily, alpha-ketoglutarate LIG isomerase; HET: AKG; 1.65A {Deinococcus ficus} | Back alignment and structure |
|---|
Probab=80.61 E-value=8.7 Score=35.37 Aligned_cols=79 Identities=30% Similarity=0.343 Sum_probs=53.8
Q ss_pred EEEEecCCHHHHHHHHHcCCcEEEEcCCC-C-C--CCCCccchHH----HHHHHHHHhcCCCcEEEec--CCC-CHHHHH
Q 017718 225 ILVKGVLTAEDARIAVQAGAAGIIVSNHG-A-R--QLDYVPATIM----ALEEVVKATQGRIPVFLDG--GVR-RGTDVF 293 (367)
Q Consensus 225 v~vK~v~~~~~a~~~~~~G~d~i~vs~~g-g-~--~~~~~~~~~~----~l~~i~~~~~~~~~via~G--GI~-~~~dv~ 293 (367)
+++=++-+.-.|+.+.++|+|+|.+++.+ + . ..|.++-+++ .+..|.+.+ ++||++|. |.. +++++.
T Consensus 18 i~~~~a~D~~sA~~~~~aG~~ai~vsg~s~a~~~G~pD~~~vt~~em~~~~~~I~~~~--~~pviaD~d~Gyg~~~~~~~ 95 (275)
T 2ze3_A 18 FLLPNAWDVASARLLEAAGFTAIGTTSAGIAHARGRTDGQTLTRDEMGREVEAIVRAV--AIPVNADIEAGYGHAPEDVR 95 (275)
T ss_dssp EEECEESSHHHHHHHHHHTCSCEEECHHHHHHHSCCCSSSSSCHHHHHHHHHHHHHHC--SSCEEEECTTCSSSSHHHHH
T ss_pred eeEecccCHHHHHHHHHcCCCEEEECcHHHHHhCCCCCCCCCCHHHHHHHHHHHHhhc--CCCEEeecCCCCCCCHHHHH
Confidence 77767788999999999999999998521 0 0 1344444443 345555555 68999977 443 455544
Q ss_pred ----HHHHcCCCEEEe
Q 017718 294 ----KALALGASGIFI 305 (367)
Q Consensus 294 ----kal~lGAd~V~i 305 (367)
+.+..||.+|.|
T Consensus 96 ~~v~~l~~aGaagv~i 111 (275)
T 2ze3_A 96 RTVEHFAALGVAGVNL 111 (275)
T ss_dssp HHHHHHHHTTCSEEEE
T ss_pred HHHHHHHHcCCcEEEE
Confidence 455689999987
|
| >2qkf_A 3-deoxy-D-manno-octulosonic acid 8- phosphate SYN; manno-octulosonate, synthase, lipopolysaccharide, KDOP, KDO8 KDO8PS; 1.75A {Neisseria meningitidis serogroup B} PDB: 3stf_A 3qpy_A 3ste_A 3qpz_A 3qq0_A 3fyo_A* 3qq1_A 3fyp_A* 3stc_A 3stg_A 1phw_A 1g7v_A* 1gg0_A 1phq_A* 1d9e_A 1pl9_A* 1q3n_A* 1x6u_A* 1x8f_A 1g7u_A* | Back alignment and structure |
|---|
Probab=80.47 E-value=5.2 Score=36.98 Aligned_cols=89 Identities=18% Similarity=0.336 Sum_probs=50.1
Q ss_pred hcCCCEEEEecC--CHHH----HHHHHHcCCcEEEEcCCCCCCCCCcc--chHHHHHHHHHHhcCCCcEEEe--------
Q 017718 220 ITKLPILVKGVL--TAED----ARIAVQAGAAGIIVSNHGARQLDYVP--ATIMALEEVVKATQGRIPVFLD-------- 283 (367)
Q Consensus 220 ~~~~Pv~vK~v~--~~~~----a~~~~~~G~d~i~vs~~gg~~~~~~~--~~~~~l~~i~~~~~~~~~via~-------- 283 (367)
.+++||++|..+ ++++ +..+...|-+-+++--.|++ ..... ..+..++.+++.. ..+||+.|
T Consensus 127 ~~~kPV~lk~G~~~t~~e~~~A~~~i~~~Gn~~i~L~~rg~~-~~~~~~~~dl~~i~~lk~~~-~~~pV~~D~sH~~q~~ 204 (280)
T 2qkf_A 127 KTGNVVNIKKPQFLSPSQMKNIVEKFHEAGNGKLILCERGSS-FGYDNLVVDMLGFGVMKQTC-GNLPVIFDVTHSLQTR 204 (280)
T ss_dssp HTCCEEEEECCTTSCGGGHHHHHHHHHHTTCCCEEEEECCEE-CSTTCEECCTTHHHHHHHHT-TTCCEEEEHHHHCC--
T ss_pred cCCCcEEEECCCCCCHHHHHHHHHHHHHcCCCeEEEEECCCC-CCCCccccCHHHHHHHHHhC-CCCCEEEECCCCcccc
Confidence 468999999985 4544 44556788765655433432 21111 2444566665543 14799996
Q ss_pred ---cCCCCH-----HH-HHHHHHcCCCEEEechHHH
Q 017718 284 ---GGVRRG-----TD-VFKALALGASGIFIGRPVV 310 (367)
Q Consensus 284 ---GGI~~~-----~d-v~kal~lGAd~V~ig~~~l 310 (367)
||-..+ .. +..+.++||++++|=+-+-
T Consensus 205 ~~~~~~s~g~~~~~~~~a~aava~Ga~G~~IE~H~~ 240 (280)
T 2qkf_A 205 DAGSAASGGRRAQALDLALAGMATRLAGLFLESHPD 240 (280)
T ss_dssp --------CHHHHHHHHHHHHHTTCCSEEEEEC---
T ss_pred CccccccCCchhhHHHHHHHHHHcCCCEEEEeecCC
Confidence 333344 23 3355668999999998764
|
| >1v5x_A PRA isomerase, phosphoribosylanthranilate isomerase; alpha-beta barrel, TRPF, riken structural genomics/proteomics initiative, RSGI; 2.00A {Thermus thermophilus} SCOP: c.1.2.4 | Back alignment and structure |
|---|
Probab=80.06 E-value=14 Score=32.34 Aligned_cols=78 Identities=14% Similarity=-0.077 Sum_probs=48.8
Q ss_pred EEEec--CCHHHHHHHHHcCCcEEEEcCCCCCCCCCccchHHHHHHHHHHhcCCCcEEEecCCCCHHHHHHHHH-cCCCE
Q 017718 226 LVKGV--LTAEDARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALA-LGASG 302 (367)
Q Consensus 226 ~vK~v--~~~~~a~~~~~~G~d~i~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~~~via~GGI~~~~dv~kal~-lGAd~ 302 (367)
.+|++ .+.++|+.+.++|+|+|-+--.... ...-+.+...++.+.++..+..++.===.+.+.+.+... +|.|.
T Consensus 2 ~vKICGit~~eda~~a~~~GaD~iGfif~~~S---pR~V~~~~a~~i~~~~~~~~~~VgVfvn~~~~~i~~~~~~~~ld~ 78 (203)
T 1v5x_A 2 RVKICGITRLEDALLAEALGAFALGFVLAPGS---RRRIAPEAARAIGEALGPFVVRVGVFRDQPPEEVLRLMEEARLQV 78 (203)
T ss_dssp EEEECCCCCHHHHHHHHHHTCSEEEEECCTTC---TTBCCHHHHHHHHHHSCSSSEEEEEESSCCHHHHHHHHHHTTCSE
T ss_pred cEEEcCCCcHHHHHHHHHcCCCEEEEEecCCC---CCcCCHHHHHHHHHhCCCCCCEEEEEeCCCHHHHHHHHHhhCCCE
Confidence 36776 7899999999999999876422111 111234556667666654333332211125777777665 79999
Q ss_pred EEec
Q 017718 303 IFIG 306 (367)
Q Consensus 303 V~ig 306 (367)
||+-
T Consensus 79 vQLH 82 (203)
T 1v5x_A 79 AQLH 82 (203)
T ss_dssp EEEC
T ss_pred EEEC
Confidence 9984
|
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST
Original result of RPS-BLAST against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
E-value |
| 367 | ||||
| d1goxa_ | 359 | c.1.4.1 (A:) Glycolate oxidase {Spinach (Spinacia | 1e-119 | |
| d1p4ca_ | 353 | c.1.4.1 (A:) Membrane-associated (S)-mandelate deh | 1e-101 | |
| d1tb3a1 | 349 | c.1.4.1 (A:1-349) Hydroxyacid oxidase {Rat (Rattus | 1e-99 | |
| d1kbia1 | 414 | c.1.4.1 (A:98-511) Flavocytochrome b2, C-terminal | 3e-99 | |
| d1p0ka_ | 329 | c.1.4.1 (A:) Isopentenyl-diphosphate delta-isomera | 5e-60 | |
| d1vcfa1 | 310 | c.1.4.1 (A:23-332) Isopentenyl-diphosphate delta-i | 1e-55 | |
| d1y0ea_ | 222 | c.1.2.5 (A:) Putative N-acetylmannosamine-6-phosph | 7e-15 | |
| d1yxya1 | 230 | c.1.2.5 (A:4-233) Putative N-acetylmannosamine-6-p | 6e-14 | |
| d1ea0a2 | 771 | c.1.4.1 (A:423-1193) Alpha subunit of glutamate sy | 2e-08 | |
| d1ofda2 | 809 | c.1.4.1 (A:431-1239) Alpha subunit of glutamate sy | 2e-08 | |
| d1juba_ | 311 | c.1.4.1 (A:) Dihydroorotate dehydrogenase {Lactoco | 4e-05 | |
| d1gtea2 | 312 | c.1.4.1 (A:533-844) Dihydropyrimidine dehydrogenas | 1e-04 | |
| d1tv5a1 | 409 | c.1.4.1 (A:158-566) Dihydroorotate dehydrogenase { | 2e-04 | |
| d1d3ga_ | 367 | c.1.4.1 (A:) Dihydroorotate dehydrogenase {Human ( | 0.002 |
| >d1goxa_ c.1.4.1 (A:) Glycolate oxidase {Spinach (Spinacia oleracea) [TaxId: 3562]} Length = 359 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: FMN-linked oxidoreductases family: FMN-linked oxidoreductases domain: Glycolate oxidase species: Spinach (Spinacia oleracea) [TaxId: 3562]
Score = 348 bits (892), Expect = e-119
Identities = 320/358 (89%), Positives = 342/358 (95%), Gaps = 3/358 (0%)
Query: 3 EITNVMEYEAIAKEKLPKMVFDYYASGAEDQWTLQENRNAFSRILFRPRILIDVSKIDMN 62
EITNV EYEAIAK+KLPKMV+DYYASGAEDQWTL ENRNAFSRILFRPRILIDV+ IDM
Sbjct: 2 EITNVNEYEAIAKQKLPKMVYDYYASGAEDQWTLAENRNAFSRILFRPRILIDVTNIDMT 61
Query: 63 TTVLGFKISMPIMIAPTAMQKMAHPEGEYATARAASAAGTIMTLSSWSTSSVEEVASTGP 122
TT+LGFKISMPIMIAPTAMQKMAHPEGEYATARAASAAGTIMTLSSW+TSSVEEVASTGP
Sbjct: 62 TTILGFKISMPIMIAPTAMQKMAHPEGEYATARAASAAGTIMTLSSWATSSVEEVASTGP 121
Query: 123 GIRFFQLYVYKDRNVVAQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLTLK 182
GIRFFQLYVYKDRNVVAQLVRRAERAGFKAIALTVDTPRLGRREADIKNRF LPPFLTLK
Sbjct: 122 GIRFFQLYVYKDRNVVAQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFVLPPFLTLK 181
Query: 183 NFQGLDLGKMDEANDSGLAAYVAGQIDRSLSWK---WLQTITKLPILVKGVLTAEDARIA 239
NF+G+DLGKMD+ANDSGL++YVAGQIDRSLSWK WLQTIT LPILVKGV+TAEDAR+A
Sbjct: 182 NFEGIDLGKMDKANDSGLSSYVAGQIDRSLSWKDVAWLQTITSLPILVKGVITAEDARLA 241
Query: 240 VQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALG 299
VQ GAAGIIVSNHGARQLDYVPATIMALEEVVKA QGRIPVFLDGGVRRGTDVFKALALG
Sbjct: 242 VQHGAAGIIVSNHGARQLDYVPATIMALEEVVKAAQGRIPVFLDGGVRRGTDVFKALALG 301
Query: 300 ASGIFIGRPVVYSLAAEGEKGVRRVLEMLREEFELAMALSGCRSLKEITRDHIVTEWD 357
A+G+FIGRPVV+SLAAEGE GV++VL+M+R+EFEL MALSGCRSLKEI+R HI +WD
Sbjct: 302 AAGVFIGRPVVFSLAAEGEAGVKKVLQMMRDEFELTMALSGCRSLKEISRSHIAADWD 359
|
| >d1p4ca_ c.1.4.1 (A:) Membrane-associated (S)-mandelate dehydrogenase {Pseudomonas putida [TaxId: 303]} Length = 353 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: FMN-linked oxidoreductases family: FMN-linked oxidoreductases domain: Membrane-associated (S)-mandelate dehydrogenase species: Pseudomonas putida [TaxId: 303]
Score = 302 bits (773), Expect = e-101
Identities = 147/355 (41%), Positives = 220/355 (61%), Gaps = 6/355 (1%)
Query: 4 ITNVMEYEAIAKEKLPKMVFDYYASGAEDQWTLQENRNAFSRILFRPRILIDVSKIDMNT 63
+ NV +Y +A+++LPKMV+DY GAED++ ++ NR+ F + F+P+ L+DVS+ +
Sbjct: 2 LFNVEDYRKLAQKRLPKMVYDYLEGGAEDEYGVKHNRDVFQQWRFKPKRLVDVSRRSLQA 61
Query: 64 TVLGFKISMPIMIAPTAMQKMAHPEGEYATARAASAAGTIMTLSSWSTSSVEEVASTGPG 123
VLG + SMP++I PT + P+G+ A ARAA+ AG LS+ S S+E++A G
Sbjct: 62 EVLGKRQSMPLLIGPTGLNGALWPKGDLALARAATKAGIPFVLSTASNMSIEDLARQCDG 121
Query: 124 IRFFQLYVYKDRNVVAQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLTLKN 183
+FQ R + +V +A G+ + LT D G RE D+ NRF +PPFLTLKN
Sbjct: 122 DLWFQ-LYVIHREIAQGMVLKALHTGYTTLVLTTDVAVNGYRERDLHNRFKIPPFLTLKN 180
Query: 184 FQGLDLGKMDEANDSGLAAYVAGQIDRSLSWK---WLQTITKLPILVKGVLTAEDARIAV 240
F+G+DLGKMD+AN AA ++ Q+D S +W+ WL+ + +LVKG+L+AEDA +
Sbjct: 181 FEGIDLGKMDKANLEMQAALMSRQMDASFNWEALRWLRDLWPHKLLVKGLLSAEDADRCI 240
Query: 241 QAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGA 300
GA G+I+SNHG RQLD + + L + V + PV +D G RRG+D+ KALALGA
Sbjct: 241 AEGADGVILSNHGGRQLDCAISPMEVLAQSVA--KTGKPVLIDSGFRRGSDIVKALALGA 298
Query: 301 SGIFIGRPVVYSLAAEGEKGVRRVLEMLREEFELAMALSGCRSLKEITRDHIVTE 355
+ +GR +Y LAA GE GV VL +L+ + + +A GC + ++ D++ E
Sbjct: 299 EAVLLGRATLYGLAARGETGVDEVLTLLKADIDRTLAQIGCPDITSLSPDYLQNE 353
|
| >d1tb3a1 c.1.4.1 (A:1-349) Hydroxyacid oxidase {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 349 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: FMN-linked oxidoreductases family: FMN-linked oxidoreductases domain: Hydroxyacid oxidase species: Rat (Rattus norvegicus) [TaxId: 10116]
Score = 296 bits (759), Expect = 1e-99
Identities = 155/353 (43%), Positives = 215/353 (60%), Gaps = 11/353 (3%)
Query: 4 ITNVMEYEAIAKEKLPKMVFDYYASGAEDQWTLQENRNAFSRILFRPRILIDVSKIDMNT 63
+ + +++A A+++L K +D+ A+D T EN AF RI RPR L D+SK+D T
Sbjct: 2 LVCLADFKAHAQKQLSKTSWDFIEGEADDGITYSENIAAFKRIRLRPRYLRDMSKVDTRT 61
Query: 64 TVLGFKISMPIMIAPTAMQKMAHPEGE-YATARAASAAGTIMTLSSWSTSSVEEVASTGP 122
T+ G +IS PI I+PTA +A P+GE A A + S S S + VA+
Sbjct: 62 TIQGQEISAPICISPTAFHSIAWPDGEKSTARAAQEANICYVISSYASYSLEDIVAAAPE 121
Query: 123 GIRFFQLYVYKDRNVVAQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLTLK 182
G R+FQLY+ D + Q+V+RAE GFKA+ +T+DTP LG R D +N+ L + LK
Sbjct: 122 GFRWFQLYMKSDWDFNKQMVQRAEALGFKALVITIDTPVLGNRRRDKRNQLNLEANILLK 181
Query: 183 NFQGLDLGKMDEANDSGLAAYVAGQIDRSLSWK---WLQTITKLPILVKGVLTAEDARIA 239
+ + L K + S W LQ+IT+LPI++KG+LT EDA +A
Sbjct: 182 DLRALKEEKP-------TQSVPVSFPKASFCWNDLSLLQSITRLPIILKGILTKEDAELA 234
Query: 240 VQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALG 299
++ GI+VSNHG RQLD V A+I AL EVV A +G+I V++DGGVR GTDV KALALG
Sbjct: 235 MKHNVQGIVVSNHGGRQLDEVSASIDALREVVAAVKGKIEVYMDGGVRTGTDVLKALALG 294
Query: 300 ASGIFIGRPVVYSLAAEGEKGVRRVLEMLREEFELAMALSGCRSLKEITRDHI 352
A IF+GRP+++ LA +GE GV+ VL++L E M LSGC+S+ EI+ D I
Sbjct: 295 ARCIFLGRPILWGLACKGEDGVKEVLDILTAELHRCMTLSGCQSVAEISPDLI 347
|
| >d1kbia1 c.1.4.1 (A:98-511) Flavocytochrome b2, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 414 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: FMN-linked oxidoreductases family: FMN-linked oxidoreductases domain: Flavocytochrome b2, C-terminal domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 297 bits (762), Expect = 3e-99
Identities = 139/379 (36%), Positives = 213/379 (56%), Gaps = 20/379 (5%)
Query: 1 MGEITNVMEYEAIAKEKLPKMVFDYYASGAEDQWTLQENRNAFSRILFRPRILIDVSKID 60
+ I N+ ++E +A + L K + YY+SGA D+ T +EN NA+ RI F+P+IL+DV K+D
Sbjct: 22 LDNIINLYDFEYLASQTLTKQAWAYYSSGANDEVTHRENHNAYHRIFFKPKILVDVRKVD 81
Query: 61 MNTTVLGFKISMPIMIAPTAMQKMAHPEGE------YATARAASAAGTIMTLSSWSTSSV 114
++T +LG + +P ++ TA+ K+ +P I TL+S S +
Sbjct: 82 ISTDMLGSHVDVPFYVSATALCKLGNPLEGEKDVARGCGQGVTKVPQMISTLASCSPEEI 141
Query: 115 EEVASTGPGIRFFQLYVYKDRNVVAQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFT 174
E A + I+++QLYV DR + LV+ E+ G KA+ +TVD P LG+RE D+K +F+
Sbjct: 142 IEAAPSDKQIQWYQLYVNSDRKITDDLVKNVEKLGVKALFVTVDAPSLGQREKDMKLKFS 201
Query: 175 LPPFLTLKNFQGLDLGKMDEANDSGLAAYVAGQIDRSLSWK---WLQTITKLPILVKGVL 231
K + G + ++ ID SL+WK L+ TKLPI++KGV
Sbjct: 202 NTKAGPKAMK------KTNVEESQGASRALSKFIDPSLTWKDIEELKKKTKLPIVIKGVQ 255
Query: 232 TAEDARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQ-----GRIPVFLDGGV 286
ED A + G +G+++SNHG RQLD+ A I L E + + ++ VF+DGGV
Sbjct: 256 RTEDVIKAAEIGVSGVVLSNHGGRQLDFSRAPIEVLAETMPILEQRNLKDKLEVFVDGGV 315
Query: 287 RRGTDVFKALALGASGIFIGRPVVYSLAAEGEKGVRRVLEMLREEFELAMALSGCRSLKE 346
RRGTDV KAL LGA G+ +GRP +Y+ + G GV + +E+LR+E E++M L G S+ E
Sbjct: 316 RRGTDVLKALCLGAKGVGLGRPFLYANSCYGRNGVEKAIEILRDEIEMSMRLLGVTSIAE 375
Query: 347 ITRDHIVTEWDASLPRPVP 365
+ D + + VP
Sbjct: 376 LKPDLLDLSTLKARTVGVP 394
|
| >d1p0ka_ c.1.4.1 (A:) Isopentenyl-diphosphate delta-isomerase {Bacillus subtilis [TaxId: 1423]} Length = 329 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: FMN-linked oxidoreductases family: FMN-linked oxidoreductases domain: Isopentenyl-diphosphate delta-isomerase species: Bacillus subtilis [TaxId: 1423]
Score = 194 bits (494), Expect = 5e-60
Identities = 59/346 (17%), Positives = 116/346 (33%), Gaps = 64/346 (18%)
Query: 41 NAFSRILFRPRIL--IDVSKIDMNTTVLGFKISMPIMIAP-TAMQKMAHPEGEYATARAA 97
I F L + + ++D++T + S PI I T E + ARAA
Sbjct: 3 TGLDDITFVHVSLPDLALEQVDISTKIGELSSSSPIFINAMTGGGGKLTYEINKSLARAA 62
Query: 98 SAAGTIMTLSSWSTSSVEEVASTGPGI------RFFQLYVYKDRNVVAQLVRRAERAGFK 151
S AG + + S ++ + I AQ E G
Sbjct: 63 SQAGIPLAVGSQMSALKDPSERLSYEIVRKENPNGLIFANLGSEATAAQAKEAVEMIGAN 122
Query: 152 AIALTVDTPRLGRREADIKNRFTLPPFLTLKNFQGLDLGKMDEANDSGLAAYVAGQIDRS 211
A+ + ++ + ++ +
Sbjct: 123 ALQIHLNVIQEIVMPEGDRSFSGALKRI-------------------------------- 150
Query: 212 LSWKWLQTITKLPILVKGVLT---AEDARIAVQAGAAGIIVSNHGARQLDYVPAT----- 263
+ + + +P++VK V A +AGAA + + +G +
Sbjct: 151 ---EQICSRVSVPVIVKEVGFGMSKASAGKLYEAGAAAVDIGGYGGTNFSKIENLRRQRQ 207
Query: 264 -----------IMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFIGRPVVYS 312
+L E+ + GG++ DV KA+ALGAS + + +
Sbjct: 208 ISFFNSWGISTAASLAEIRSEF-PASTMIASGGLQDALDVAKAIALGASCTGMAGHFLKA 266
Query: 313 LAAEGEKGVRRVLEMLREEFELAMALSGCRSLKEITRDHIVTEWDA 358
L GE+G+ ++++ EE +L M + G R++ ++ + +V + +
Sbjct: 267 LTDSGEEGLLEEIQLILEELKLIMTVLGARTIADLQKAPLVIKGET 312
|
| >d1vcfa1 c.1.4.1 (A:23-332) Isopentenyl-diphosphate delta-isomerase {Thermus thermophilus [TaxId: 274]} Length = 310 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: FMN-linked oxidoreductases family: FMN-linked oxidoreductases domain: Isopentenyl-diphosphate delta-isomerase species: Thermus thermophilus [TaxId: 274]
Score = 183 bits (464), Expect = 1e-55
Identities = 62/329 (18%), Positives = 102/329 (31%), Gaps = 45/329 (13%)
Query: 38 ENRNAFSRILFRPRIL--IDVSKIDMNTTVLGFKISMPIMIAPTAMQKMAHPEGEYATAR 95
+ R + L + +S++D+ T LG + P +I + A A
Sbjct: 1 KTTTGLEGFRLRYQALAGLALSEVDLTTPFLGKTLKAPFLIGAMTGGEENGERINLALAE 60
Query: 96 AASAAGTIMTLSSWSTSSVEEVASTGPGIRFFQLYVYKDRNVVAQLVRRAERAGFKAIAL 155
AA A G M L S A F++ + ++ A L
Sbjct: 61 AAEALGVGMMLGSGRILLERPEALRS-----FRVRKVAPKALL--------IANLGLAQL 107
Query: 156 TVDTPRLGRREADIKNRFTLPPFLTLKNFQGLDLGKMDEANDSGLAAYVAGQIDRSLSWK 215
R ++ L ++ + + ++ L
Sbjct: 108 RRYGRDDLLRLVEMLEADALAF--------HVNPLQEAVQRGDTDFRGLVERLAELLPLP 159
Query: 216 WLQTITKLPILVKGVLTAEDARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEV----- 270
+ + V L+ E A A + V+ G V + E
Sbjct: 160 FPVMV----KEVGHGLSREAALALRDLPLAAVDVAGAGGTSWARVEEWVRFGEVRHPELC 215
Query: 271 ------------VKATQGRIPVFLDGGVRRGTDVFKALALGASGIFIGRPVVYSLAAEGE 318
V+ +P+ GGV GTD KALALGA + + RP++ A EG
Sbjct: 216 EIGIPTARAILEVREVLPHLPLVASGGVYTGTDGAKALALGADLLAVARPLLR-PALEGA 274
Query: 319 KGVRRVLEMLREEFELAMALSGCRSLKEI 347
+ V + EE A+ G R+ KE
Sbjct: 275 ERVAAWIGDYLEELRTALFAIGARNPKEA 303
|
| >d1y0ea_ c.1.2.5 (A:) Putative N-acetylmannosamine-6-phosphate 2-epimerase NanE {Staphylococcus aureus [TaxId: 1280]} Length = 222 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Ribulose-phoshate binding barrel family: NanE-like domain: Putative N-acetylmannosamine-6-phosphate 2-epimerase NanE species: Staphylococcus aureus [TaxId: 1280]
Score = 70.7 bits (172), Expect = 7e-15
Identities = 25/188 (13%), Positives = 54/188 (28%), Gaps = 11/188 (5%)
Query: 134 DRNVVAQLVRRAERAGFKAI-ALTVDTPRLGRREAD-----IKNRFTLPPFLTLKNFQGL 187
+++++ A G I A T + + D I R + +
Sbjct: 21 SSFIMSKMALAAYEGGAVGIRANTKEDILAIKETVDLPVIGIVKRDYDHSDVFITATSKE 80
Query: 188 DLGKMDEANDSGLAAYVAGQIDRSLSWKWLQTITKL---PILVKGVLTAEDARIAVQAGA 244
++ + Q + + + I ++ + T E+A+ A + G
Sbjct: 81 VDELIESQCEVIALDATLQQRPKETLDELVSYIRTHAPNVEIMADIATVEEAKNAARLGF 140
Query: 245 AGIIVSNHGARQLDYVPATIMALEEVVK--ATQGRIPVFLDGGVRRGTDVFKALALGASG 302
I + HG + +K V +G V + + LG
Sbjct: 141 DYIGTTLHGYTSYTQGQLLYQNDFQFLKDVLQSVDAKVIAEGNVITPDMYKRVMDLGVHC 200
Query: 303 IFIGRPVV 310
+G +
Sbjct: 201 SVVGGAIT 208
|
| >d1yxya1 c.1.2.5 (A:4-233) Putative N-acetylmannosamine-6-phosphate 2-epimerase NanE {Streptococcus pyogenes [TaxId: 1314]} Length = 230 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Ribulose-phoshate binding barrel family: NanE-like domain: Putative N-acetylmannosamine-6-phosphate 2-epimerase NanE species: Streptococcus pyogenes [TaxId: 1314]
Score = 68.3 bits (166), Expect = 6e-14
Identities = 26/189 (13%), Positives = 53/189 (28%), Gaps = 21/189 (11%)
Query: 134 DRNVVAQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLTLKNFQGLD----- 188
++ + + A+ AG I +I+ LP +K
Sbjct: 31 TGGIMPLMAKAAQEAGAVGIRANSVRD-----IKEIQAITDLPIIGIIKKDYPPQEPFIT 85
Query: 189 ------LGKMDEANDSGLAAYVAGQIDRSLSW----KWLQTITKLPILVKGVLTAEDARI 238
L + ++ +L+ + T ++ +
Sbjct: 86 ATMTEVDQLAALNIAVIAMDCTKRDRHDGLDIASFIRQVKEKYPNQLLMADISTFDEGLV 145
Query: 239 AVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALAL 298
A QAG + + G A + + + I V +G + + K L
Sbjct: 146 AHQAGIDFVGTTLSGYTPYSRQEAGPD-VALIEALCKAGIAVIAEGKIHSPEEAKKINDL 204
Query: 299 GASGIFIGR 307
G +GI +G
Sbjct: 205 GVAGIVVGG 213
|
| >d1ea0a2 c.1.4.1 (A:423-1193) Alpha subunit of glutamate synthase, central and FMN domains {Azospirillum brasilense [TaxId: 192]} Length = 771 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: FMN-linked oxidoreductases family: FMN-linked oxidoreductases domain: Alpha subunit of glutamate synthase, central and FMN domains species: Azospirillum brasilense [TaxId: 192]
Score = 53.4 bits (128), Expect = 2e-08
Identities = 39/194 (20%), Positives = 62/194 (31%), Gaps = 47/194 (24%)
Query: 215 KWLQTIT-KLPILVKGVLTAEDARIA---VQAGAAGIIVSNHGARQLDYVPATIM----- 265
L+ I + VK V + IA +A A I++S + P T +
Sbjct: 563 YDLKQINPDAKVTVKLVSRSGIGTIAAGVAKANADIILISGNSG-GTGASPQTSIKFAGL 621
Query: 266 ----ALEEVVKA-----TQGRIPVFLDGGVRRGTDVFKALALGASGIFIGR--------- 307
L EV + + R+ + DGG++ G D+ A LGA IG
Sbjct: 622 PWEMGLSEVHQVLTLNRLRHRVRLRTDGGLKTGRDIVIAAMLGAEEFGIGTASLIAMGCI 681
Query: 308 ------------------PVVYSLAAEGEKGVRRVLEMLREEFELAMALSGCRSLKEIT- 348
+ + V + L EE +A G RSL E+
Sbjct: 682 MVRQCHSNTCPVGVCVQDDKLRQKFVGTPEKVVNLFTFLAEEVREILAGLGFRSLNEVIG 741
Query: 349 RDHIVTEWDASLPR 362
R ++ +
Sbjct: 742 RTDLLHQVSRGAEH 755
|
| >d1ofda2 c.1.4.1 (A:431-1239) Alpha subunit of glutamate synthase, central and FMN domains {Synechocystis sp. [TaxId: 1143]} Length = 809 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: FMN-linked oxidoreductases family: FMN-linked oxidoreductases domain: Alpha subunit of glutamate synthase, central and FMN domains species: Synechocystis sp. [TaxId: 1143]
Score = 53.4 bits (128), Expect = 2e-08
Identities = 33/178 (18%), Positives = 55/178 (30%), Gaps = 46/178 (25%)
Query: 222 KLPILVKGVLTAEDARIA---VQAGAAGIIVS-----NHGARQ--LDYV--PATIMALEE 269
+ + VK V IA +A A I +S + + + P + + E
Sbjct: 598 EAQVSVKLVAEIGIGTIAAGVAKANADIIQISGHDGGTGASPLSSIKHAGSP-WELGVTE 656
Query: 270 VVKA-----TQGRIPVFLDGGVRRGTDVFKALALGASGIFIGR----------------- 307
V + + R+ + DGG++ G DV A +GA G
Sbjct: 657 VHRVLMENQLRDRVLLRADGGLKTGWDVVMAALMGAEEYGFGSIAMIAEGCIMARVCHTN 716
Query: 308 ----------PVVYSLAAEGEKGVRRVLEMLREEFELAMALSGCRSLKEIT-RDHIVT 354
+ V + EE +A G RSL +I R ++
Sbjct: 717 NCPVGVATQQERLRQRFKGVPGQVVNFFYFIAEEVRSLLAHLGYRSLDDIIGRTDLLK 774
|
| >d1juba_ c.1.4.1 (A:) Dihydroorotate dehydrogenase {Lactococcus lactis, isozyme A [TaxId: 1358]} Length = 311 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: FMN-linked oxidoreductases family: FMN-linked oxidoreductases domain: Dihydroorotate dehydrogenase species: Lactococcus lactis, isozyme A [TaxId: 1358]
Score = 42.7 bits (99), Expect = 4e-05
Identities = 59/322 (18%), Positives = 89/322 (27%), Gaps = 54/322 (16%)
Query: 61 MNTTVLGFKISMPIMIAPTAMQKMAHPEGEYATARAASAAGTIMTLSSWSTSSVEEVAST 120
+NTT K + P M A E AS AG +T S
Sbjct: 2 LNTTFANAKFANPFMNASGVHCM----TIEDLEELKASQAGAYIT------KSSTLEKRE 51
Query: 121 G-PGIRFFQLYVYKDRNVVAQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFTLPPFL 179
G P R+ L N + + + + + G I
Sbjct: 52 GNPLPRYVDLE-LGSINSMGLPNLGFDYYLDYVLKNQKENAQEGPIFFSIAGMSAAENIA 110
Query: 180 TLKNFQGLDLGKMDEANDSGLAAYVAGQIDRSLSW-----KWLQTITKLPILVKGVLTAE 234
LK Q D + E N S Q+ K + T P+ VK +
Sbjct: 111 MLKKIQESDFSGITELNLSCPNVPGEPQLAYDFEATEKLLKEVFTFFTKPLGVKLPPYFD 170
Query: 235 D------ARIAVQAGAAGIIVSNH-----------------------GARQLDYVPATIM 265
A I Q + N G P +
Sbjct: 171 LVHFDIMAEILNQFPLTYVNSVNSIGNGLFIDPEAESVVIKPKDGFGGIGGAYIKPTALA 230
Query: 266 ALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFIGRPVVYSLAAEGEKGVRRVL 325
+ + I + GG+ G D F+ L GA+ + IG + EG R++
Sbjct: 231 NVRAFYTRLKPEIQIIGTGGIETGQDAFEHLLCGATMLQIGTALHK----EGPAIFDRII 286
Query: 326 EMLREEFELAMALSGCRSLKEI 347
+ L E M G +S+ +
Sbjct: 287 KELEE----IMNQKGYQSIADF 304
|
| >d1gtea2 c.1.4.1 (A:533-844) Dihydropyrimidine dehydrogenase, domain 4 {Pig (Sus scrofa) [TaxId: 9823]} Length = 312 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: FMN-linked oxidoreductases family: FMN-linked oxidoreductases domain: Dihydropyrimidine dehydrogenase, domain 4 species: Pig (Sus scrofa) [TaxId: 9823]
Score = 41.1 bits (95), Expect = 1e-04
Identities = 13/73 (17%), Positives = 26/73 (35%), Gaps = 5/73 (6%)
Query: 261 PATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFIGRPVVYSLAAEGEKG 320
P + A+ + +A G P+ GG+ + L GAS + + V +
Sbjct: 240 PIALRAVTTIARALPG-FPILATGGIDSAESGLQFLHSGASVLQVCSAVQN----QDFTV 294
Query: 321 VRRVLEMLREEFE 333
++ L+
Sbjct: 295 IQDYCTGLKALLY 307
|
| >d1tv5a1 c.1.4.1 (A:158-566) Dihydroorotate dehydrogenase {Plasmodium falciparum [TaxId: 5833]} Length = 409 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: FMN-linked oxidoreductases family: FMN-linked oxidoreductases domain: Dihydroorotate dehydrogenase species: Plasmodium falciparum [TaxId: 5833]
Score = 40.7 bits (94), Expect = 2e-04
Identities = 33/206 (16%), Positives = 65/206 (31%), Gaps = 30/206 (14%)
Query: 168 DIKNRFTLPPFLTLKNFQGLDLGKMDEANDSGLAAYVAGQIDRSLSWKWLQTITKLPILV 227
+ + + ++ D +++ N+ + + + T K + V
Sbjct: 212 EEIDNLEKNNIMNDESTYNEDNKIVEKKNNFNKNNSHMMKDAKDNFLWFNTTKKKPLVFV 271
Query: 228 K------GVLTAEDARIAVQAGAAGIIVSN-HGARQLDYVPATIM--------------A 266
K E A + ++ G+I+SN
Sbjct: 272 KLAPDLNQEQKKEIADVLLETNIDGMIISNTTTQINDIKSFENKKGGVSGAKLKDISTKF 331
Query: 267 LEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFIGRPVVYSLAAEGEKGVRRVLE 326
+ E+ T +IP+ GG+ G D + + GAS + +V+ G K ++
Sbjct: 332 ICEMYNYTNKQIPIIASGGIFSGLDALEKIEAGASVCQLYSCLVF----NGMKSAVQIKR 387
Query: 327 MLREEFELAMALSGCRSLKEIT-RDH 351
L + G +LKE R H
Sbjct: 388 ELNHL----LYQRGYYNLKEAIGRKH 409
|
| >d1d3ga_ c.1.4.1 (A:) Dihydroorotate dehydrogenase {Human (Homo sapiens) [TaxId: 9606]} Length = 367 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: FMN-linked oxidoreductases family: FMN-linked oxidoreductases domain: Dihydroorotate dehydrogenase species: Human (Homo sapiens) [TaxId: 9606]
Score = 37.3 bits (85), Expect = 0.002
Identities = 21/84 (25%), Positives = 34/84 (40%), Gaps = 9/84 (10%)
Query: 269 EVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFIGRPVVYSLAAEGEKGVRRVLEML 328
E+ TQGR+P+ GGV G D + + GAS + + + + G V +V L
Sbjct: 290 EMYALTQGRVPIIGVGGVSSGQDALEKIRAGASLVQLYTALTF----WGPPVVGKVKREL 345
Query: 329 REEFELAMALSGCRSLKEIT-RDH 351
+ G + + DH
Sbjct: 346 EAL----LKEQGFGGVTDAIGADH 365
|
Homologous Domains Detected by HHsearch
Original result of HHsearch against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 367 | |||
| d1tb3a1 | 349 | Hydroxyacid oxidase {Rat (Rattus norvegicus) [TaxI | 100.0 | |
| d1goxa_ | 359 | Glycolate oxidase {Spinach (Spinacia oleracea) [Ta | 100.0 | |
| d1kbia1 | 414 | Flavocytochrome b2, C-terminal domain {Baker's yea | 100.0 | |
| d1p4ca_ | 353 | Membrane-associated (S)-mandelate dehydrogenase {P | 100.0 | |
| d1p0ka_ | 329 | Isopentenyl-diphosphate delta-isomerase {Bacillus | 100.0 | |
| d1vcfa1 | 310 | Isopentenyl-diphosphate delta-isomerase {Thermus t | 100.0 | |
| d1eepa_ | 388 | Inosine monophosphate dehydrogenase (IMPDH) {Lyme | 99.92 | |
| d1zfja1 | 365 | Inosine monophosphate dehydrogenase (IMPDH) {Strep | 99.9 | |
| d1vrda1 | 330 | Inosine monophosphate dehydrogenase (IMPDH) {Therm | 99.89 | |
| d1gtea2 | 312 | Dihydropyrimidine dehydrogenase, domain 4 {Pig (Su | 99.89 | |
| d1jr1a1 | 378 | Inosine monophosphate dehydrogenase (IMPDH) {Chine | 99.89 | |
| d1pvna1 | 362 | Inosine monophosphate dehydrogenase (IMPDH) {Tritr | 99.88 | |
| d1juba_ | 311 | Dihydroorotate dehydrogenase {Lactococcus lactis, | 99.86 | |
| d1vhna_ | 305 | Putative flavin oxidoreducatase TM0096 {Thermotoga | 99.86 | |
| d1ep3a_ | 311 | Dihydroorotate dehydrogenase {Lactococcus lactis, | 99.85 | |
| d2cu0a1 | 368 | Inosine monophosphate dehydrogenase (IMPDH) {Pyroc | 99.85 | |
| d1d3ga_ | 367 | Dihydroorotate dehydrogenase {Human (Homo sapiens) | 99.84 | |
| d1tv5a1 | 409 | Dihydroorotate dehydrogenase {Plasmodium falciparu | 99.82 | |
| d1ea0a2 | 771 | Alpha subunit of glutamate synthase, central and F | 99.75 | |
| d2b4ga1 | 312 | Dihydroorotate dehydrogenase {Trypanosoma brucei [ | 99.75 | |
| d1ofda2 | 809 | Alpha subunit of glutamate synthase, central and F | 99.69 | |
| d1f76a_ | 336 | Dihydroorotate dehydrogenase {Escherichia coli [Ta | 99.65 | |
| d1y0ea_ | 222 | Putative N-acetylmannosamine-6-phosphate 2-epimera | 99.37 | |
| d1z41a1 | 337 | NADPH dehydrogenase NamA {Bacillus subtilis [TaxId | 99.27 | |
| d1yxya1 | 230 | Putative N-acetylmannosamine-6-phosphate 2-epimera | 99.26 | |
| d1djqa1 | 340 | Trimethylamine dehydrogenase, N-terminal domain {M | 99.05 | |
| d1ps9a1 | 330 | 2,4-dienoyl-CoA reductase, N-terminal domain {Esch | 99.02 | |
| d1vyra_ | 363 | Pentaerythritol tetranirate reductase {Enterobacte | 98.52 | |
| d1gwja_ | 374 | Morphinone reductase {Pseudomonas putida [TaxId: 3 | 98.42 | |
| d1icpa_ | 364 | 12-oxophytodienoate reductase (OPR, OYE homolog) { | 98.35 | |
| d1wa3a1 | 202 | KDPG aldolase {Thermotoga maritima [TaxId: 2336]} | 98.31 | |
| d1rd5a_ | 261 | Trp synthase alpha-subunit {Maize (Zea mays) [TaxI | 98.23 | |
| d1qopa_ | 267 | Trp synthase alpha-subunit {Salmonella typhimurium | 98.2 | |
| d1a53a_ | 247 | Indole-3-glycerophosphate synthase, IPGS {Archaeon | 98.13 | |
| d1q45a_ | 380 | 12-oxophytodienoate reductase (OPR, OYE homolog) { | 98.09 | |
| d1xm3a_ | 251 | Thiazole biosynthesis protein ThiG {Bacillus subti | 98.07 | |
| d1geqa_ | 248 | Trp synthase alpha-subunit {Archaeon Pyrococcus fu | 98.07 | |
| d1wv2a_ | 243 | Thiazole biosynthesis protein ThiG {Pseudomonas ae | 98.01 | |
| d1oyaa_ | 399 | Old yellow enzyme (OYE) {Lager yeast (Saccharomyce | 98.01 | |
| d1vc4a_ | 254 | Indole-3-glycerophosphate synthase, IPGS {Thermus | 97.99 | |
| d1mzha_ | 225 | Deoxyribose-phosphate aldolase DeoC {Aquifex aeoli | 97.97 | |
| d1xi3a_ | 206 | Thiamin phosphate synthase {Archaeon (Pyrococcus f | 97.93 | |
| d1ub3a_ | 211 | Deoxyribose-phosphate aldolase DeoC {Thermus therm | 97.88 | |
| d1o0ya_ | 251 | Deoxyribose-phosphate aldolase DeoC {Thermotoga ma | 97.82 | |
| d2tpsa_ | 226 | Thiamin phosphate synthase {Bacillus subtilis [Tax | 97.65 | |
| d1i4na_ | 251 | Indole-3-glycerophosphate synthase, IPGS {Thermoto | 97.65 | |
| d1wbha1 | 213 | KDPG aldolase {Escherichia coli [TaxId: 562]} | 97.64 | |
| d1piia2 | 254 | Indole-3-glycerophosphate synthase, IPGS {Escheric | 97.61 | |
| d1vhca_ | 212 | Hypothetical protein HI0047 {Haemophilus influenza | 97.58 | |
| d1ka9f_ | 251 | Cyclase subunit (or domain) of imidazoleglycerolph | 97.57 | |
| d1znna1 | 254 | Pyridoxal biosynthesis lyase PdxS {Bacillus stearo | 97.56 | |
| d1q6oa_ | 213 | 3-keto-L-gulonate 6-phosphate decarboxylase {Esche | 97.5 | |
| d1h5ya_ | 252 | Cyclase subunit (or domain) of imidazoleglycerolph | 97.48 | |
| d1vzwa1 | 239 | Phosphoribosylformimino-5-aminoimidazole carboxami | 97.43 | |
| d1n7ka_ | 234 | Deoxyribose-phosphate aldolase DeoC {Archaeon Aero | 97.42 | |
| d1thfd_ | 253 | Cyclase subunit (or domain) of imidazoleglycerolph | 97.39 | |
| d1vpxa_ | 218 | Decameric fructose-6-phosphate aldolase/transaldol | 97.33 | |
| d1ujpa_ | 271 | Trp synthase alpha-subunit {Thermus thermophilus [ | 97.28 | |
| d1jvna1 | 323 | Cyclase subunit (or domain) of imidazoleglycerolph | 97.22 | |
| d2flia1 | 217 | D-ribulose-5-phosphate 3-epimerase {Streptococcus | 97.01 | |
| d1hg3a_ | 224 | Triosephosphate isomerase {Archaeon Pyrococcus woe | 96.99 | |
| d1w0ma_ | 226 | Triosephosphate isomerase {Thermoproteus tenax [Ta | 96.98 | |
| d1h5ya_ | 252 | Cyclase subunit (or domain) of imidazoleglycerolph | 96.98 | |
| d1thfd_ | 253 | Cyclase subunit (or domain) of imidazoleglycerolph | 96.98 | |
| d1mxsa_ | 216 | KDPG aldolase {Pseudomonas putida [TaxId: 303]} | 96.86 | |
| d1l6wa_ | 220 | Decameric fructose-6-phosphate aldolase/transaldol | 96.84 | |
| d1ka9f_ | 251 | Cyclase subunit (or domain) of imidazoleglycerolph | 96.82 | |
| d1qapa1 | 167 | Quinolinic acid phosphoribosyltransferase (Nicotin | 96.75 | |
| d1qo2a_ | 241 | Phosphoribosylformimino-5-aminoimidazole carboxami | 96.74 | |
| d1p1xa_ | 250 | Deoxyribose-phosphate aldolase DeoC {Escherichia c | 96.67 | |
| d1qpoa1 | 169 | Quinolinic acid phosphoribosyltransferase (Nicotin | 96.66 | |
| d1wx0a1 | 211 | Decameric fructose-6-phosphate aldolase/transaldol | 96.51 | |
| d1vzwa1 | 239 | Phosphoribosylformimino-5-aminoimidazole carboxami | 96.5 | |
| d1vcva1 | 226 | Deoxyribose-phosphate aldolase DeoC {Archaeon Pyro | 96.28 | |
| d1jvna1 | 323 | Cyclase subunit (or domain) of imidazoleglycerolph | 95.9 | |
| d1mxsa_ | 216 | KDPG aldolase {Pseudomonas putida [TaxId: 303]} | 95.83 | |
| d1o4ua1 | 170 | Quinolinic acid phosphoribosyltransferase (Nicotin | 95.79 | |
| d1tqxa_ | 221 | D-ribulose-5-phosphate 3-epimerase {Plasmodium fal | 95.76 | |
| d1xkya1 | 292 | Dihydrodipicolinate synthase {Bacillus anthracis [ | 95.61 | |
| d1xxxa1 | 296 | Dihydrodipicolinate synthase {Mycobacterium tuberc | 95.6 | |
| d2a6na1 | 292 | Dihydrodipicolinate synthase {Escherichia coli [Ta | 95.56 | |
| d1eepa_ | 388 | Inosine monophosphate dehydrogenase (IMPDH) {Lyme | 95.33 | |
| d1viza_ | 229 | PcrB protein homolog YerE {Bacillus subtilis [TaxI | 94.9 | |
| d1o5ka_ | 295 | Dihydrodipicolinate synthase {Thermotoga maritima | 94.85 | |
| d1zfja1 | 365 | Inosine monophosphate dehydrogenase (IMPDH) {Strep | 94.8 | |
| d2f6ua1 | 231 | (S)-3-O-geranylgeranylglyceryl phosphate synthase | 94.57 | |
| d1h1ya_ | 220 | D-ribulose-5-phosphate 3-epimerase {Rice (Oryza sa | 94.55 | |
| d1qo2a_ | 241 | Phosphoribosylformimino-5-aminoimidazole carboxami | 94.54 | |
| d2a4aa1 | 256 | Fructose-1,6-bisphosphate aldolase {Plasmodium yoe | 94.45 | |
| d1vhca_ | 212 | Hypothetical protein HI0047 {Haemophilus influenza | 94.17 | |
| d1wbha1 | 213 | KDPG aldolase {Escherichia coli [TaxId: 562]} | 94.08 | |
| d1ea0a2 | 771 | Alpha subunit of glutamate synthase, central and F | 93.85 | |
| d2czda1 | 206 | Orotidine 5'-monophosphate decarboxylase (OMP deca | 93.79 | |
| d1vrda1 | 330 | Inosine monophosphate dehydrogenase (IMPDH) {Therm | 93.54 | |
| d1ofda2 | 809 | Alpha subunit of glutamate synthase, central and F | 93.35 | |
| d1hl2a_ | 295 | N-acetylneuraminate lyase {Escherichia coli [TaxId | 93.28 | |
| d1xkya1 | 292 | Dihydrodipicolinate synthase {Bacillus anthracis [ | 93.17 | |
| d1km4a_ | 212 | Orotidine 5'-monophosphate decarboxylase (OMP deca | 92.75 | |
| d1f74a_ | 293 | N-acetylneuraminate lyase {Haemophilus influenzae | 92.56 | |
| d2p10a1 | 197 | Uncharacterized protein Mll9387 {Mesorhizobium lot | 92.53 | |
| d1y0ea_ | 222 | Putative N-acetylmannosamine-6-phosphate 2-epimera | 92.52 | |
| d1geqa_ | 248 | Trp synthase alpha-subunit {Archaeon Pyrococcus fu | 92.24 | |
| d1rvga_ | 305 | Fructose-bisphosphate aldolase (FBP aldolase) {The | 91.9 | |
| d1yxya1 | 230 | Putative N-acetylmannosamine-6-phosphate 2-epimera | 91.85 | |
| d1pvna1 | 362 | Inosine monophosphate dehydrogenase (IMPDH) {Tritr | 91.85 | |
| d1s2wa_ | 275 | Phosphoenolpyruvate mutase {Blue mussel (Mytilus e | 91.76 | |
| d1vc4a_ | 254 | Indole-3-glycerophosphate synthase, IPGS {Thermus | 91.36 | |
| d1qopa_ | 267 | Trp synthase alpha-subunit {Salmonella typhimurium | 90.96 | |
| d1xm3a_ | 251 | Thiazole biosynthesis protein ThiG {Bacillus subti | 90.94 | |
| d1vhna_ | 305 | Putative flavin oxidoreducatase TM0096 {Thermotoga | 90.75 | |
| d1rpxa_ | 230 | D-ribulose-5-phosphate 3-epimerase {Potato (Solanu | 90.62 | |
| d1twda_ | 247 | Copper homeostasis protein CutC {Shigella flexneri | 90.56 | |
| d1twda_ | 247 | Copper homeostasis protein CutC {Shigella flexneri | 90.5 | |
| d1jr1a1 | 378 | Inosine monophosphate dehydrogenase (IMPDH) {Chine | 90.44 | |
| d1tqja_ | 221 | D-ribulose-5-phosphate 3-epimerase {Synechocystis | 89.73 | |
| d1wa3a1 | 202 | KDPG aldolase {Thermotoga maritima [TaxId: 2336]} | 89.63 | |
| d1muma_ | 289 | 2-methylisocitrate lyase {Escherichia coli [TaxId: | 89.38 | |
| d1wv2a_ | 243 | Thiazole biosynthesis protein ThiG {Pseudomonas ae | 88.36 | |
| d2a6na1 | 292 | Dihydrodipicolinate synthase {Escherichia coli [Ta | 88.31 | |
| d1eixa_ | 231 | Orotidine 5'-monophosphate decarboxylase (OMP deca | 88.18 | |
| d2cu0a1 | 368 | Inosine monophosphate dehydrogenase (IMPDH) {Pyroc | 87.36 | |
| d1ojxa_ | 251 | Archaeal fructose 1,6-bisphosphate aldolase {Archa | 86.65 | |
| d1z41a1 | 337 | NADPH dehydrogenase NamA {Bacillus subtilis [TaxId | 86.19 | |
| d1dbta_ | 237 | Orotidine 5'-monophosphate decarboxylase (OMP deca | 86.02 | |
| d1gvfa_ | 284 | Tagatose-1,6-bisphosphate aldolase {Escherichia co | 85.64 | |
| d1vr6a1 | 338 | 3-deoxy-D-arabino-heptulosonate-7-phosphate syntha | 85.61 | |
| d1dxea_ | 253 | 2-dehydro-3-deoxy-galactarate aldolase {Escherichi | 84.93 | |
| d1a53a_ | 247 | Indole-3-glycerophosphate synthase, IPGS {Archaeon | 84.67 | |
| d1ccwa_ | 137 | Glutamate mutase, small subunit {Clostridium cochl | 84.12 | |
| d2r25b1 | 128 | Response regulator Sin1 {Baker's yeast (Saccharomy | 84.02 | |
| d1f61a_ | 418 | Isocitrate lyase {Mycobacterium tuberculosis [TaxI | 83.97 | |
| d1igwa_ | 416 | Isocitrate lyase {Escherichia coli [TaxId: 562]} | 83.47 | |
| d1piia2 | 254 | Indole-3-glycerophosphate synthase, IPGS {Escheric | 83.28 | |
| d1xhfa1 | 121 | Aerobic respiration control protein ArcA, N-termin | 82.76 | |
| d1onra_ | 316 | Transaldolase {Escherichia coli [TaxId: 562]} | 82.07 | |
| d1oy0a_ | 262 | Ketopantoate hydroxymethyltransferase PanB {Mycoba | 80.84 |
| >d1tb3a1 c.1.4.1 (A:1-349) Hydroxyacid oxidase {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: FMN-linked oxidoreductases family: FMN-linked oxidoreductases domain: Hydroxyacid oxidase species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=100.00 E-value=2e-74 Score=562.86 Aligned_cols=343 Identities=46% Similarity=0.755 Sum_probs=311.6
Q ss_pred CCChHHHHHHHHHhCCccccccccCCCCchhhHHHhHhccccceeeccccCCCCCCccceeEcCeeeccceEeCcccchh
Q 017718 4 ITNVMEYEAIAKEKLPKMVFDYYASGAEDQWTLQENRNAFSRILFRPRILIDVSKIDMNTTVLGFKISMPIMIAPTAMQK 83 (367)
Q Consensus 4 ~~~~~d~~~~A~~~l~~~~~~y~~~ga~~~~t~~~n~~~~~~i~l~pr~l~~~~~vd~st~i~g~~l~~Pi~iAPm~~~~ 83 (367)
++||+|||+.||++||+.+|+|++||++||.|+++|+++||+|+|+||+|+|++++||+|+|||+++++||+||||++++
T Consensus 2 ~~~i~d~~~~A~~~lp~~~~~y~~~ga~de~t~~~N~~aFd~i~l~pr~L~d~~~idlst~~lG~~l~~P~~Iapmtgg~ 81 (349)
T d1tb3a1 2 LVCLADFKAHAQKQLSKTSWDFIEGEADDGITYSENIAAFKRIRLRPRYLRDMSKVDTRTTIQGQEISAPICISPTAFHS 81 (349)
T ss_dssp CCSHHHHHHHHHHTSCHHHHHHHHCCCTTCHHHHHHHHHHHHCCBCCCCSSCCSSCBCCEEETTEEESSSEEECCCSCGG
T ss_pred cccHHHHHHHHHHHCCHHHHHHHhccccccHHHHHHHHHHHhccEEcccccCCCCCCCceeECCcCccceEEEcchhccc
Confidence 68999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccCChhhHHHHHHHHHcCCceeecCCCCCCHHHHHhhCC-CceEEEEeecCCHHHHHHHHHHHHHcCCcEEEEecCCCCC
Q 017718 84 MAHPEGEYATARAASAAGTIMTLSSWSTSSVEEVASTGP-GIRFFQLYVYKDRNVVAQLVRRAERAGFKAIALTVDTPRL 162 (367)
Q Consensus 84 l~~~~~e~~~a~aa~~~G~~~~vs~~~~~~~e~i~~~~~-~~~~~QLy~~~d~~~~~~~l~ra~~~G~~ai~itvd~p~~ 162 (367)
+.|+++|..++++|+++|+++++|++++.+.|++.+..+ ++.|||+|..++++...+++++++++|++++++|+|.|+.
T Consensus 82 ~~~~~~~~~lA~aA~~~g~~~~~~s~s~~~~e~v~~~~~~~~~~~ql~~~~~~~~~~~~i~~~~~~g~~a~~~tvd~~~~ 161 (349)
T d1tb3a1 82 IAWPDGEKSTARAAQEANICYVISSYASYSLEDIVAAAPEGFRWFQLYMKSDWDFNKQMVQRAEALGFKALVITIDTPVL 161 (349)
T ss_dssp GTCTTTHHHHHHHHHHHTCCEEECTTCSSCHHHHHHHSTTCCEEEECCCCSCTTHHHHHHHHHHHHTCCCEEEECSCSSC
T ss_pred ccccchhhHHHHhhhhcccceeecccccccchhhhhhccCCCeeeeeecccCHHHHHHHHHHHHhcCCcccccccCchhh
Confidence 999999999999999999999999999999999988766 7899999999999999999999999999999999999999
Q ss_pred CchhHHhhhhcCCCCccccccccccccCccccccchhhHHHhhhccCccccHH---HHHhhcCCCEEEEecCCHHHHHHH
Q 017718 163 GRREADIKNRFTLPPFLTLKNFQGLDLGKMDEANDSGLAAYVAGQIDRSLSWK---WLQTITKLPILVKGVLTAEDARIA 239 (367)
Q Consensus 163 g~r~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~---~l~~~~~~Pv~vK~v~~~~~a~~~ 239 (367)
++|++|+++++.+|......++..+...... .. ......++.++|+ |+|+.|+.|+++|++.+.+++..+
T Consensus 162 ~~~~~d~r~~~~~~~~~~~~~~~~~~~~~~~----~~---~~~~~~~~~~~~~~i~~l~~~~~~pii~Kgi~~~~da~~a 234 (349)
T d1tb3a1 162 GNRRRDKRNQLNLEANILLKDLRALKEEKPT----QS---VPVSFPKASFCWNDLSLLQSITRLPIILKGILTKEDAELA 234 (349)
T ss_dssp CCCHHHHHTTCCCCC----CCSCCCCC--------------------CCCCHHHHHHHHTTCCSCEEEEEECSHHHHHHH
T ss_pred cchhhhhhccccCCcccchhhhhhhhhcccc----cc---ccccccCCCCCHHHHHHHHHhcCCCcccchhhhhHHHHHH
Confidence 9999999999998876555444322211110 00 1112234567886 899999999999999999999999
Q ss_pred HHcCCcEEEEcCCCCCCCCCccchHHHHHHHHHHhcCCCcEEEecCCCCHHHHHHHHHcCCCEEEechHHHHHhhccChH
Q 017718 240 VQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFIGRPVVYSLAAEGEK 319 (367)
Q Consensus 240 ~~~G~d~i~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~~~via~GGI~~~~dv~kal~lGAd~V~ig~~~l~~l~~~G~~ 319 (367)
.++|+|+|++|||||+++++.+++.+.|+++++.+++++|||+|||||+|.||+|||+||||+|+||||++|+++++|++
T Consensus 235 ~~~G~d~i~vsnhggr~~d~~~~~~~~l~~i~~~~~~~~~iiadGGIR~G~Dv~KALALGA~~V~igrp~L~~la~~G~~ 314 (349)
T d1tb3a1 235 MKHNVQGIVVSNHGGRQLDEVSASIDALREVVAAVKGKIEVYMDGGVRTGTDVLKALALGARCIFLGRPILWGLACKGED 314 (349)
T ss_dssp HHTTCSEEEECCGGGTSSCSBCCHHHHHHHHHHHHTTSSEEEEESSCCSHHHHHHHHHTTCSCEEESHHHHHHHHHHHHH
T ss_pred HHhhccceeeeccccccccccccchhhcceeeeccCCCeeEEeccCcCcHHHHHHHHHcCCCEEEEChHHHHHHHhccHH
Confidence 99999999999999999999999999999999999889999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHhCCCChhhhccccee
Q 017718 320 GVRRVLEMLREEFELAMALSGCRSLKEITRDHIV 353 (367)
Q Consensus 320 ~v~~~i~~l~~el~~~m~~~G~~si~~l~~~~l~ 353 (367)
||.++++.|++||+..|.++|+++++||+++.|.
T Consensus 315 gv~~~l~~l~~EL~~~M~l~G~~~i~eL~~~~i~ 348 (349)
T d1tb3a1 315 GVKEVLDILTAELHRCMTLSGCQSVAEISPDLIQ 348 (349)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTCSBGGGCCGGGBC
T ss_pred HHHHHHHHHHHHHHHHHHHhCCCCHHHcCHhhee
Confidence 9999999999999999999999999999998874
|
| >d1goxa_ c.1.4.1 (A:) Glycolate oxidase {Spinach (Spinacia oleracea) [TaxId: 3562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: FMN-linked oxidoreductases family: FMN-linked oxidoreductases domain: Glycolate oxidase species: Spinach (Spinacia oleracea) [TaxId: 3562]
Probab=100.00 E-value=1.5e-71 Score=544.22 Aligned_cols=352 Identities=90% Similarity=1.347 Sum_probs=324.1
Q ss_pred CCChHHHHHHHHHhCCccccccccCCCCchhhHHHhHhccccceeeccccCCCCCCccceeEcCeeeccceEeCcccchh
Q 017718 4 ITNVMEYEAIAKEKLPKMVFDYYASGAEDQWTLQENRNAFSRILFRPRILIDVSKIDMNTTVLGFKISMPIMIAPTAMQK 83 (367)
Q Consensus 4 ~~~~~d~~~~A~~~l~~~~~~y~~~ga~~~~t~~~n~~~~~~i~l~pr~l~~~~~vd~st~i~g~~l~~Pi~iAPm~~~~ 83 (367)
++|++|||+.||++||+.+|+|+.||++||.|+++|+++||+|+|+||+|+|++++||||+|||+++++||+||||++++
T Consensus 3 ~~~i~d~~~~A~~~lp~~~~~y~~gga~~~~t~~~N~~~Fd~i~l~pr~L~d~~~iDlst~~lG~~~~~P~~IspMtgg~ 82 (359)
T d1goxa_ 3 ITNVNEYEAIAKQKLPKMVYDYYASGAEDQWTLAENRNAFSRILFRPRILIDVTNIDMTTTILGFKISMPIMIAPTAMQK 82 (359)
T ss_dssp CCSTTHHHHHHHHHSCHHHHHHHHCCSTTCHHHHHHHHGGGGEEECCCCSCCCSCCBCCEEETTEEESSSEEECCCSCGG
T ss_pred ccCHHHHHHHHHHhCCHHHHHHHhccCCccHHHHHHHHHHHhcceecccccCCCCCCCceeECCcccCCceeeccccccc
Confidence 89999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccCChhhHHHHHHHHHcCCceeecCCCCCCHHHHHhhCCCceEEEEeecCCHHHHHHHHHHHHHcCCcEEEEecCCCCCC
Q 017718 84 MAHPEGEYATARAASAAGTIMTLSSWSTSSVEEVASTGPGIRFFQLYVYKDRNVVAQLVRRAERAGFKAIALTVDTPRLG 163 (367)
Q Consensus 84 l~~~~~e~~~a~aa~~~G~~~~vs~~~~~~~e~i~~~~~~~~~~QLy~~~d~~~~~~~l~ra~~~G~~ai~itvd~p~~g 163 (367)
..|+++|..++++|.++|+++++|++++.+.+++.+..+++.|+|+|...+......++++++.+|++++++|+|.|+.+
T Consensus 83 ~~~~~~e~~lA~aA~~~gi~~~~~s~s~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~a~~~~~~~~vd~~~~~ 162 (359)
T d1goxa_ 83 MAHPEGEYATARAASAAGTIMTLSSWATSSVEEVASTGPGIRFFQLYVYKDRNVVAQLVRRAERAGFKAIALTVDTPRLG 162 (359)
T ss_dssp GTCTTHHHHHHHHHHHTTCCEEECTTCSSCHHHHHTTCCCCEEEEECCBSSHHHHHHHHHHHHHTTCCEEEEECSCSSCC
T ss_pred cCCCchHHHhhhhHHhhCCcccccccccccchhhHHhcCCCcccccccchhHHHHHHHHHHHHHhhcccccccccchhhh
Confidence 99999999999999999999999999999999999888889999999999999999999999999999999999999999
Q ss_pred chhHHhhhhcCCCCccccccccccccCccccccchhhHHHhhhccCccccHH---HHHhhcCCCEEEEecCCHHHHHHHH
Q 017718 164 RREADIKNRFTLPPFLTLKNFQGLDLGKMDEANDSGLAAYVAGQIDRSLSWK---WLQTITKLPILVKGVLTAEDARIAV 240 (367)
Q Consensus 164 ~r~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~---~l~~~~~~Pv~vK~v~~~~~a~~~~ 240 (367)
.|+++.++++..|+.....++...................+..+.++.++|+ |+++.++.|+++|++.+.+++..+.
T Consensus 163 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~kg~~~~~da~~a~ 242 (359)
T d1goxa_ 163 RREADIKNRFVLPPFLTLKNFEGIDLGKMDKANDSGLSSYVAGQIDRSLSWKDVAWLQTITSLPILVKGVITAEDARLAV 242 (359)
T ss_dssp CCHHHHHTTCCCCTTCCCGGGSSSCCC---------HHHHHHHTBCTTCCHHHHHHHHHHCCSCEEEECCCSHHHHHHHH
T ss_pred hhhhhccccccCCcccchhhhhhhccccCcccccccHHHHHHhhcCCCCCHHHHHHHHhhcccceeeecccchHHHHHHH
Confidence 9999999999888776655544332222222222333445666678888996 8999999999999999999999999
Q ss_pred HcCCcEEEEcCCCCCCCCCccchHHHHHHHHHHhcCCCcEEEecCCCCHHHHHHHHHcCCCEEEechHHHHHhhccChHH
Q 017718 241 QAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFIGRPVVYSLAAEGEKG 320 (367)
Q Consensus 241 ~~G~d~i~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~~~via~GGI~~~~dv~kal~lGAd~V~ig~~~l~~l~~~G~~~ 320 (367)
++|++++.++||||+++++++++.+.|+++++.+++++|||+|||||+|.||+|||+||||+|++|||+||+++..|++|
T Consensus 243 ~~g~~~~~vsnhggr~ld~~~~~~~~l~~i~~~~~~~~~iiadGGIR~G~Di~KALaLGAd~vgigrp~L~~la~~g~~g 322 (359)
T d1goxa_ 243 QHGAAGIIVSNHGARQLDYVPATIMALEEVVKAAQGRIPVFLDGGVRRGTDVFKALALGAAGVFIGRPVVFSLAAEGEAG 322 (359)
T ss_dssp HTTCSEEEECCGGGTSSTTCCCHHHHHHHHHHHTTTSSCEEEESSCCSHHHHHHHHHHTCSEEEECHHHHHHHHHHHHHH
T ss_pred HccccceecccccccccccccchhhhchhhhhccCCccceeeccCcCcHHHHHHHHHcCCCEEEEcHHHHHHHHhccHHH
Confidence 99999999999999999999999999999999988899999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHhCCCChhhhcccceeec
Q 017718 321 VRRVLEMLREEFELAMALSGCRSLKEITRDHIVTE 355 (367)
Q Consensus 321 v~~~i~~l~~el~~~m~~~G~~si~~l~~~~l~~~ 355 (367)
|+++|+.|++||+.+|.++|++|++||++..|+..
T Consensus 323 v~~~i~~l~~EL~~~M~l~G~~~i~~L~~~~l~~~ 357 (359)
T d1goxa_ 323 VKKVLQMMRDEFELTMALSGCRSLKEISRSHIAAD 357 (359)
T ss_dssp HHHHHHHHHHHHHHHHHHHTCSBTTTCCGGGEEET
T ss_pred HHHHHHHHHHHHHHHHHHhCCCCHHHcCHhhccCC
Confidence 99999999999999999999999999999998754
|
| >d1kbia1 c.1.4.1 (A:98-511) Flavocytochrome b2, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: FMN-linked oxidoreductases family: FMN-linked oxidoreductases domain: Flavocytochrome b2, C-terminal domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=100.00 E-value=1.2e-67 Score=525.60 Aligned_cols=359 Identities=39% Similarity=0.661 Sum_probs=309.0
Q ss_pred CCCCCChHHHHHHHHHhCCccccccccCCCCchhhHHHhHhccccceeeccccCCCCCCccceeEcCeeeccceEeCccc
Q 017718 1 MGEITNVMEYEAIAKEKLPKMVFDYYASGAEDQWTLQENRNAFSRILFRPRILIDVSKIDMNTTVLGFKISMPIMIAPTA 80 (367)
Q Consensus 1 ~~~~~~~~d~~~~A~~~l~~~~~~y~~~ga~~~~t~~~n~~~~~~i~l~pr~l~~~~~vd~st~i~g~~l~~Pi~iAPm~ 80 (367)
|++++|++|||+.||++||+.+|+|+.||++||.|+++|+++||+|+|+||+|+|++++||||+|||+++++||+|||||
T Consensus 22 ~~~~~~~~d~~~~A~~~lp~~~~~y~~~ga~~e~t~~~N~~aFd~i~l~Pr~L~dvs~iDlst~~lG~~l~~P~~Isp~g 101 (414)
T d1kbia1 22 LDNIINLYDFEYLASQTLTKQAWAYYSSGANDEVTHRENHNAYHRIFFKPKILVDVRKVDISTDMLGSHVDVPFYVSATA 101 (414)
T ss_dssp GGGCCSHHHHHHHHHHHSCHHHHHHHHCCSTTCHHHHHHHHGGGGCEECCCCSCCCSSCBCCEEETTEEESSSEEECCCS
T ss_pred hhhcCCHHHHHHHHHHhCCHHHHHHHhccccchHHHHHHHHHHHhceeeccccCCCcCCCCceeECCccCCCCEEEChhh
Confidence 46789999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred chhccCCh-hhH--HHHHHHHHcCCceeecCCCCCCHHHHHhhCC---CceEEEEeecCCHHHHHHHHHHHHHcCCcEEE
Q 017718 81 MQKMAHPE-GEY--ATARAASAAGTIMTLSSWSTSSVEEVASTGP---GIRFFQLYVYKDRNVVAQLVRRAERAGFKAIA 154 (367)
Q Consensus 81 ~~~l~~~~-~e~--~~a~aa~~~G~~~~vs~~~~~~~e~i~~~~~---~~~~~QLy~~~d~~~~~~~l~ra~~~G~~ai~ 154 (367)
++++.|+. .+. +.++++...|+++++|+.+..+.+++.+..+ .+.|+|+|.+.|++....++++++++|+++++
T Consensus 102 ~~~~~~~~~~~~~~A~a~aa~~~~~~~~ls~~~~~~~~~~~~~a~~~~~~~~~q~y~~~~~~~~~~l~~ra~~ag~~al~ 181 (414)
T d1kbia1 102 LCKLGNPLEGEKDVARGCGQGVTKVPQMISTLASCSPEEIIEAAPSDKQIQWYQLYVNSDRKITDDLVKNVEKLGVKALF 181 (414)
T ss_dssp CGGGTCTTTTHHHHHHHHHSSSSCCCEEECTTCSSCHHHHHHTCCCSSCCEEEEECCCSSHHHHHHHHHHHHHHTCSCEE
T ss_pred hhcccCcchhHHHHHhhHHHhhhccccccccccccchHHHHHHhcCCccchhhcccccccHHHHHHHHHHHHHcCCcccc
Confidence 99999983 344 4555555589999999999999999987654 46899999999999999999999999999999
Q ss_pred EecCCCCCCchhHHhhhhcCCCCccccccccccccCccccccchhhHHHhhhccCccccHH---HHHhhcCCCEEEEecC
Q 017718 155 LTVDTPRLGRREADIKNRFTLPPFLTLKNFQGLDLGKMDEANDSGLAAYVAGQIDRSLSWK---WLQTITKLPILVKGVL 231 (367)
Q Consensus 155 itvd~p~~g~r~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~---~l~~~~~~Pv~vK~v~ 231 (367)
+|+|.|+.|+|++|+++.+..+....... .. .... ........+....++.++|+ |+++.++.|+++|++.
T Consensus 182 ~tvD~~~~g~re~d~~~~~~~~~~~~~~~-~~---~~~~--~~~~~~~~i~~~~~~~l~~~~i~~i~~~~~~~~i~kgi~ 255 (414)
T d1kbia1 182 VTVDAPSLGQREKDMKLKFSNTKAGPKAM-KK---TNVE--ESQGASRALSKFIDPSLTWKDIEELKKKTKLPIVIKGVQ 255 (414)
T ss_dssp EECSCSSCCCCHHHHHHHHTTCC--------C---CCCS--SCCCGGGGCBTTBCTTCCHHHHHHHHHHCSSCEEEEEEC
T ss_pred cccccccccccHHHHHhcccccccchhhh-hc---cccc--ccccHHHHHHHhcccCCCHHHHHHHhccCCceEEeeccc
Confidence 99999999999999998885432111000 00 0000 00111222334446677896 8999999999999999
Q ss_pred CHHHHHHHHHcCCcEEEEcCCCCCCCCCccchHHHHHHHHHHh-----cCCCcEEEecCCCCHHHHHHHHHcCCCEEEec
Q 017718 232 TAEDARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKAT-----QGRIPVFLDGGVRRGTDVFKALALGASGIFIG 306 (367)
Q Consensus 232 ~~~~a~~~~~~G~d~i~vs~~gg~~~~~~~~~~~~l~~i~~~~-----~~~~~via~GGI~~~~dv~kal~lGAd~V~ig 306 (367)
+.++|..+.++|+++++++||||+++++.+++...|+++.+.+ .+++|||+|||||+|.||+|||+||||+|+||
T Consensus 256 ~~~da~~~~~~G~~~i~vsnhggr~~d~~~~~~~~l~~i~~~~~~~~v~~~~~viadGGIR~G~DVaKALALGAdaVgig 335 (414)
T d1kbia1 256 RTEDVIKAAEIGVSGVVLSNHGGRQLDFSRAPIEVLAETMPILEQRNLKDKLEVFVDGGVRRGTDVLKALCLGAKGVGLG 335 (414)
T ss_dssp SHHHHHHHHHTTCSEEEECCTTTTSSTTCCCHHHHHHHHHHHHHTTTCBTTBEEEEESSCCSHHHHHHHHHHTCSEEEEC
T ss_pred hhHHHHHHHhcCCcceeeccccccccccccccccchhhhhhhhhhhccCCceeEEecCCcCcHHHHHHHHHcCCCEEEEc
Confidence 9999999999999999999999999999999999999987653 45799999999999999999999999999999
Q ss_pred hHHHHHhhccChHHHHHHHHHHHHHHHHHHHHhCCCChhhhcccceeeccCCCCCCCCC
Q 017718 307 RPVVYSLAAEGEKGVRRVLEMLREEFELAMALSGCRSLKEITRDHIVTEWDASLPRPVP 365 (367)
Q Consensus 307 ~~~l~~l~~~G~~~v~~~i~~l~~el~~~m~~~G~~si~~l~~~~l~~~~~~~~~~~~~ 365 (367)
||+||++++.|++||.++++.|++||+.+|.++|++|++||+++.|.......+...+|
T Consensus 336 rp~L~~la~~G~egv~~~l~~l~~EL~~~M~l~G~~si~eL~~~~l~~~~~~~~~~~~p 394 (414)
T d1kbia1 336 RPFLYANSCYGRNGVEKAIEILRDEIEMSMRLLGVTSIAELKPDLLDLSTLKARTVGVP 394 (414)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCBGGGCCGGGEECTTTTCEECCCC
T ss_pred HHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHhCCCCHHHcCHHHccccccccccCCCC
Confidence 99999999999999999999999999999999999999999999998665544444444
|
| >d1p4ca_ c.1.4.1 (A:) Membrane-associated (S)-mandelate dehydrogenase {Pseudomonas putida [TaxId: 303]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: FMN-linked oxidoreductases family: FMN-linked oxidoreductases domain: Membrane-associated (S)-mandelate dehydrogenase species: Pseudomonas putida [TaxId: 303]
Probab=100.00 E-value=1.5e-66 Score=506.87 Aligned_cols=349 Identities=43% Similarity=0.749 Sum_probs=315.0
Q ss_pred CCCChHHHHHHHHHhCCccccccccCCCCchhhHHHhHhccccceeeccccCCCCCCccceeEcCeeeccceEeCcccch
Q 017718 3 EITNVMEYEAIAKEKLPKMVFDYYASGAEDQWTLQENRNAFSRILFRPRILIDVSKIDMNTTVLGFKISMPIMIAPTAMQ 82 (367)
Q Consensus 3 ~~~~~~d~~~~A~~~l~~~~~~y~~~ga~~~~t~~~n~~~~~~i~l~pr~l~~~~~vd~st~i~g~~l~~Pi~iAPm~~~ 82 (367)
+++||.|||+.||++||+..|+|+.||++||.|+++|+++||+|+|+||+|+|++++||+|+|||+++++||+|+||+++
T Consensus 1 ~~~~~~d~~~~a~~~~p~~~~~y~~~ga~~~~t~~~N~~aFd~i~l~pr~L~d~~~idlst~~lGk~ls~Pi~Iapmtgg 80 (353)
T d1p4ca_ 1 NLFNVEDYRKLAQKRLPKMVYDYLEGGAEDEYGVKHNRDVFQQWRFKPKRLVDVSRRSLQAEVLGKRQSMPLLIGPTGLN 80 (353)
T ss_dssp CCSSHHHHHHHHHHHSCHHHHHHHHCCSTTCHHHHHHHHGGGGEEECCCCSCCCSSCBCCEEETTEEESSSEEECCCSCG
T ss_pred CCCCHHHHHHHHHHhCCHHHHHHHhccccchHHHHHHHHHHHhCcEEcccccCCCCCCCceEECCcCccCceeecccccc
Confidence 47899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hccCChhhHHHHHHHHHcCCceeecCCCCCCHHHHHhhCCCceEEEEeecCCHHHHHHHHHHHHHcCCcEEEEecCCCCC
Q 017718 83 KMAHPEGEYATARAASAAGTIMTLSSWSTSSVEEVASTGPGIRFFQLYVYKDRNVVAQLVRRAERAGFKAIALTVDTPRL 162 (367)
Q Consensus 83 ~l~~~~~e~~~a~aa~~~G~~~~vs~~~~~~~e~i~~~~~~~~~~QLy~~~d~~~~~~~l~ra~~~G~~ai~itvd~p~~ 162 (367)
+..++.+|..++++|+++|+++++|++++.+.+++.+..+...|+|.| ..+...+..++++++.+|++++++|+|.|..
T Consensus 81 ~~~~~~~n~~lA~aA~~~~i~~~~gs~s~~~~~e~~~~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~l~~~vd~~~~ 159 (353)
T d1p4ca_ 81 GALWPKGDLALARAATKAGIPFVLSTASNMSIEDLARQCDGDLWFQLY-VIHREIAQGMVLKALHTGYTTLVLTTDVAVN 159 (353)
T ss_dssp GGTSTTHHHHHHHHHHHHTCCEEECTTCSSCHHHHHHHCCSCEEEEEC-CSSHHHHHHHHHHHHHTTCCEEEEECSCSSC
T ss_pred ccccchhhHHHHHHHHHhhccccccccccccchhHHHhcCCceeeeec-cccHHHHHHhHHHHHHcCCcceeeecccccc
Confidence 999999999999999999999999999999999998887777788866 5688899999999999999999999999999
Q ss_pred CchhHHhhhhcCCCCccccccccccccCccccccchhhHHHhhhccCccccHH---HHHhhcCCCEEEEecCCHHHHHHH
Q 017718 163 GRREADIKNRFTLPPFLTLKNFQGLDLGKMDEANDSGLAAYVAGQIDRSLSWK---WLQTITKLPILVKGVLTAEDARIA 239 (367)
Q Consensus 163 g~r~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~---~l~~~~~~Pv~vK~v~~~~~a~~~ 239 (367)
|.|+.|.++++..|...........................+.++.++.++|+ ++++.++.|+++|++.+.+++..+
T Consensus 160 g~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~i~~kgv~~~~~~~~a 239 (353)
T d1p4ca_ 160 GYRERDLHNRFKIPPFLTLKNFEGIDLGKMDKANLEMQAALMSRQMDASFNWEALRWLRDLWPHKLLVKGLLSAEDADRC 239 (353)
T ss_dssp CCCHHHHHHTCCCCTTCCCGGGTTCCCSCCSSTTTTTHHHHTSSCCCTTCCHHHHHHHHHHCCSEEEEEEECCHHHHHHH
T ss_pred CcchhhhhhhhcccchhhhhhhhhhccccccccccchhHHHHHhccCCCCCHHHHHHHHhccccchhhhcchhhhhHHHH
Confidence 99999999999877654443322221111111112233445566667778887 889999999999999999999999
Q ss_pred HHcCCcEEEEcCCCCCCCCCccchHHHHHHHHHHhcCCCcEEEecCCCCHHHHHHHHHcCCCEEEechHHHHHhhccChH
Q 017718 240 VQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFIGRPVVYSLAAEGEK 319 (367)
Q Consensus 240 ~~~G~d~i~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~~~via~GGI~~~~dv~kal~lGAd~V~ig~~~l~~l~~~G~~ 319 (367)
.+.|+|+++++||||+++++.+++.+.+++++... ++|||+|||||+|.||+|||+||||+|++|||++|+++..|++
T Consensus 240 ~~~g~~~~~~s~~gg~~~~~~~~~~~~l~~i~~~~--~~~viasGGIR~G~Dv~KALaLGAd~vgigrp~L~~l~~~G~e 317 (353)
T d1p4ca_ 240 IAEGADGVILSNHGGRQLDCAISPMEVLAQSVAKT--GKPVLIDSGFRRGSDIVKALALGAEAVLLGRATLYGLAARGET 317 (353)
T ss_dssp HHTTCSEEEECCGGGTSCTTCCCGGGTHHHHHHHH--CSCEEECSSCCSHHHHHHHHHTTCSCEEESHHHHHHHHHHHHH
T ss_pred HhcCCchhhhcccccccccccccchhcccchhccc--ccceeecCCcCchHHHHHHHHcCCCEEEEcHHHHHHHHhccHH
Confidence 99999999999999999999999999999998766 7899999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHhCCCChhhhcccceee
Q 017718 320 GVRRVLEMLREEFELAMALSGCRSLKEITRDHIVT 354 (367)
Q Consensus 320 ~v~~~i~~l~~el~~~m~~~G~~si~~l~~~~l~~ 354 (367)
+|+++++.|++||+..|.++|+++++||+++.|+.
T Consensus 318 gv~~~l~~l~~El~~~M~l~G~~~i~eL~~~~l~~ 352 (353)
T d1p4ca_ 318 GVDEVLTLLKADIDRTLAQIGCPDITSLSPDYLQN 352 (353)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTCCBGGGCCGGGEEE
T ss_pred HHHHHHHHHHHHHHHHHHHhCCCCHHHcCHHhccC
Confidence 99999999999999999999999999999998864
|
| >d1p0ka_ c.1.4.1 (A:) Isopentenyl-diphosphate delta-isomerase {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: FMN-linked oxidoreductases family: FMN-linked oxidoreductases domain: Isopentenyl-diphosphate delta-isomerase species: Bacillus subtilis [TaxId: 1423]
Probab=100.00 E-value=3e-46 Score=359.85 Aligned_cols=275 Identities=21% Similarity=0.262 Sum_probs=221.4
Q ss_pred ccccceeecccc--CCCCCCccceeEcCeeeccceEeCccc-chhccCChhhHHHHHHHHHcCCceeecCCCCCCHHHHH
Q 017718 42 AFSRILFRPRIL--IDVSKIDMNTTVLGFKISMPIMIAPTA-MQKMAHPEGEYATARAASAAGTIMTLSSWSTSSVEEVA 118 (367)
Q Consensus 42 ~~~~i~l~pr~l--~~~~~vd~st~i~g~~l~~Pi~iAPm~-~~~l~~~~~e~~~a~aa~~~G~~~~vs~~~~~~~e~i~ 118 (367)
+||+|+|+|++| .|+++|||+|+|+|+++++||++|||+ +....+++++.+++++|.+.|+++++|++++.+.++..
T Consensus 4 gfddi~lvP~~l~~~d~~~vdlst~i~G~~l~~Pi~is~Ms~g~~~~~~~~~~alA~aA~~~g~~~~~~~~~~~~~~~~~ 83 (329)
T d1p0ka_ 4 GLDDITFVHVSLPDLALEQVDISTKIGELSSSSPIFINAMTGGGGKLTYEINKSLARAASQAGIPLAVGSQMSALKDPSE 83 (329)
T ss_dssp SGGGEEECCCSCCCCCGGGCBCCEEETTEEESCSEEEECCCCSCHHHHHHHHHHHHHHHHHHTCCEECCCCTTTTTCHHH
T ss_pred CcceEEEECCCCCCCChhhCCCCEEECCEEcCCceEECCHHHhhhhccHHHHHHHHHHHHHcCCCeecccccccchhHHH
Confidence 699999999999 578999999999999999999999994 55556778899999999999999999999877766543
Q ss_pred hhC------CCceEEEEeecCCHHHHHHHHHHHHHcCCcEEEEecCCCCCCchhHHhhhhcCCCCccccccccccccCcc
Q 017718 119 STG------PGIRFFQLYVYKDRNVVAQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLTLKNFQGLDLGKM 192 (367)
Q Consensus 119 ~~~------~~~~~~QLy~~~d~~~~~~~l~ra~~~G~~ai~itvd~p~~g~r~~~~~~~~~~p~~~~~~~~~~~~~~~~ 192 (367)
... ..+.++|++............+.+++.|++++.+++++|....+....
T Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~ai~~~~~~~~~~~~~~~~----------------------- 140 (329)
T d1p0ka_ 84 RLSYEIVRKENPNGLIFANLGSEATAAQAKEAVEMIGANALQIHLNVIQEIVMPEGD----------------------- 140 (329)
T ss_dssp HHHHHHHHHHCSSSCEEEEEETTCCHHHHHHHHHHTTCSEEEEEECTTTTC-----------------------------
T ss_pred HhhhhhHhhhCCcceEEEeeccchhHHHHHHHHHHcCCCEEEecccccchhhhcccc-----------------------
Confidence 211 134456666544445555667777889999999999988642211000
Q ss_pred ccccchhhHHHhhhccCccccH---HHHHhhcCCCEEEEec---CCHHHHHHHHHcCCcEEEEcCCCCCCCC--------
Q 017718 193 DEANDSGLAAYVAGQIDRSLSW---KWLQTITKLPILVKGV---LTAEDARIAVQAGAAGIIVSNHGARQLD-------- 258 (367)
Q Consensus 193 ~~~~~~~~~~~~~~~~d~~~~~---~~l~~~~~~Pv~vK~v---~~~~~a~~~~~~G~d~i~vs~~gg~~~~-------- 258 (367)
.+....| +++++.++.|+++|++ .++++++.+.++|+|+|+|+||||++++
T Consensus 141 ---------------~~~~~~~~~i~~i~~~~~~~vivk~v~~~~~~~~a~~~~~~GaD~i~v~~~gG~~~~~~~~~~~~ 205 (329)
T d1p0ka_ 141 ---------------RSFSGALKRIEQICSRVSVPVIVKEVGFGMSKASAGKLYEAGAAAVDIGGYGGTNFSKIENLRRQ 205 (329)
T ss_dssp -----------------CTTHHHHHHHHHHHCSSCEEEEEESSCCCHHHHHHHHHHTCSEEEEEC---------------
T ss_pred ---------------ccccchHHHHHHHHHHcCCCcEEEecCCcchHHHHHHHHhcCCCEEEEcCCCCCCccccchhhcc
Confidence 0111133 3889999999999998 6789999999999999999999998643
Q ss_pred --------CccchHHHHHHHHHHhcCCCcEEEecCCCCHHHHHHHHHcCCCEEEechHHHHHhhccChHHHHHHHHHHHH
Q 017718 259 --------YVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFIGRPVVYSLAAEGEKGVRRVLEMLRE 330 (367)
Q Consensus 259 --------~~~~~~~~l~~i~~~~~~~~~via~GGI~~~~dv~kal~lGAd~V~ig~~~l~~l~~~G~~~v~~~i~~l~~ 330 (367)
.+++..+.+.++.... +++|||+||||+++.|++|||+||||+|++||+++|++++.|++||.++++.|++
T Consensus 206 ~~~g~~~~~~~~~~~~l~~~~~~~-~~v~viadGGIr~g~Dv~KAlalGAdaV~iGr~~l~al~~~G~~gv~~~l~~l~~ 284 (329)
T d1p0ka_ 206 RQISFFNSWGISTAASLAEIRSEF-PASTMIASGGLQDALDVAKAIALGASCTGMAGHFLKALTDSGEEGLLEEIQLILE 284 (329)
T ss_dssp CCGGGGTTCSCCHHHHHHHHHHHC-TTSEEEEESSCCSHHHHHHHHHTTCSEEEECHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cCccchhHhHHHHHHHHHHHHhhc-CCceEEEcCCcccHHHHHHHHHcCCCchhccHHHHHHhccCCHHHHHHHHHHHHH
Confidence 3556778888887765 4799999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhCCCChhhhcccceeec
Q 017718 331 EFELAMALSGCRSLKEITRDHIVTE 355 (367)
Q Consensus 331 el~~~m~~~G~~si~~l~~~~l~~~ 355 (367)
||+..|.++|++|++||++..++..
T Consensus 285 el~~~m~~~G~~~i~el~~~~lv~~ 309 (329)
T d1p0ka_ 285 ELKLIMTVLGARTIADLQKAPLVIK 309 (329)
T ss_dssp HHHHHHHHHTCCBHHHHTTCCEEEC
T ss_pred HHHHHHHHhCCCCHHHhCcCCEEec
Confidence 9999999999999999999887654
|
| >d1vcfa1 c.1.4.1 (A:23-332) Isopentenyl-diphosphate delta-isomerase {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: FMN-linked oxidoreductases family: FMN-linked oxidoreductases domain: Isopentenyl-diphosphate delta-isomerase species: Thermus thermophilus [TaxId: 274]
Probab=100.00 E-value=7.2e-45 Score=346.24 Aligned_cols=271 Identities=25% Similarity=0.242 Sum_probs=217.2
Q ss_pred HhHhccccceeeccccC--CCCCCccceeEcCeeeccceEeCcccchhccCChhhHHHHHHHHHcCCceeecCCCCCCHH
Q 017718 38 ENRNAFSRILFRPRILI--DVSKIDMNTTVLGFKISMPIMIAPTAMQKMAHPEGEYATARAASAAGTIMTLSSWSTSSVE 115 (367)
Q Consensus 38 ~n~~~~~~i~l~pr~l~--~~~~vd~st~i~g~~l~~Pi~iAPm~~~~l~~~~~e~~~a~aa~~~G~~~~vs~~~~~~~e 115 (367)
+|+++|++|+|+||+|+ |++++||||+|+|+++++||++|||++++..++..+.+++++|.+.|+++++|+++..+.+
T Consensus 1 ~n~~~f~~~~~~p~~L~~~d~~~vDlst~~~G~~l~~Pi~iapm~~~~~~~~~~~~~lA~aA~~~g~~~~~~~~~~~~~~ 80 (310)
T d1vcfa1 1 KTTTGLEGFRLRYQALAGLALSEVDLTTPFLGKTLKAPFLIGAMTGGEENGERINLALAEAAEALGVGMMLGSGRILLER 80 (310)
T ss_dssp CCCCSGGGEEECCCTTCCCCGGGCCCCEEETTEEESSSEEECCCC---CCHHHHHHHHHHHHHHHTCEEEEEECHHHHHC
T ss_pred CCcccccceEEEcccCCCCCcccCcCCeEECCEEcCCCEEEcChhhhhhhhhHHHHHHHHHHHHcCCCeEeccchhcchh
Confidence 58999999999999995 7899999999999999999999999988777777889999999999999999987543332
Q ss_pred HH-------HhhCC-CceEEEEeecCCHHHHHHHHHHH-HHcCCcEEEEecCCCCCCchhHHhhhhcCCCCccccccccc
Q 017718 116 EV-------ASTGP-GIRFFQLYVYKDRNVVAQLVRRA-ERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLTLKNFQG 186 (367)
Q Consensus 116 ~i-------~~~~~-~~~~~QLy~~~d~~~~~~~l~ra-~~~G~~ai~itvd~p~~g~r~~~~~~~~~~p~~~~~~~~~~ 186 (367)
+. .+..+ .+.++|++.....+...+.+.++ +..+++++.++++++.. ...
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~------~~~--------------- 139 (310)
T d1vcfa1 81 PEALRSFRVRKVAPKALLIANLGLAQLRRYGRDDLLRLVEMLEADALAFHVNPLQE------AVQ--------------- 139 (310)
T ss_dssp TTTHHHHCCTTTCSSSCEEEEEEGGGGGTCCHHHHHHHHHHHTCSEEEEECCHHHH------HHT---------------
T ss_pred hhhhcccchHHhcCCcceeeeecccchhhhhHHHHHHHHHhcCCCeeccccccchh------hhc---------------
Confidence 21 12233 57888998766555554555555 45799999999886521 100
Q ss_pred cccCccccccchhhHHHhhhccCccc-cH---HHHHhhcCCCEEEEec---CCHHHHHHHHHcCCcEEEEcCCCCCCC--
Q 017718 187 LDLGKMDEANDSGLAAYVAGQIDRSL-SW---KWLQTITKLPILVKGV---LTAEDARIAVQAGAAGIIVSNHGARQL-- 257 (367)
Q Consensus 187 ~~~~~~~~~~~~~~~~~~~~~~d~~~-~~---~~l~~~~~~Pv~vK~v---~~~~~a~~~~~~G~d~i~vs~~gg~~~-- 257 (367)
..+..+ .| .+....++.|+++|++ .+.++++.+.++|+|+|+|+||||++.
T Consensus 140 --------------------~~~~~~~~~~~~~~~~~~~~~p~~~k~v~~~~~~e~a~~~~~aGvd~i~vsn~gg~~~~~ 199 (310)
T d1vcfa1 140 --------------------RGDTDFRGLVERLAELLPLPFPVMVKEVGHGLSREAALALRDLPLAAVDVAGAGGTSWAR 199 (310)
T ss_dssp --------------------TSCCCCTTHHHHHHHHCSCSSCEEEECSSSCCCHHHHHHHTTSCCSEEECCCBTSCCHHH
T ss_pred --------------------ccccccccHHHHHHHHhhccCCceeeeecCcccHHHHHHHHHcCCCEEEeccccccchhh
Confidence 001111 22 2444567899999998 679999999999999999999999642
Q ss_pred ----------------CCccchHHHHHHHHHHhcCCCcEEEecCCCCHHHHHHHHHcCCCEEEechHHHHHhhccChHHH
Q 017718 258 ----------------DYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFIGRPVVYSLAAEGEKGV 321 (367)
Q Consensus 258 ----------------~~~~~~~~~l~~i~~~~~~~~~via~GGI~~~~dv~kal~lGAd~V~ig~~~l~~l~~~G~~~v 321 (367)
+.+.++.+.|.++.+.. .++|||+||||++|.||+|+|+||||+|++|||++|++. .|.++|
T Consensus 200 ~~~~~~~~~~~~~~~~~~g~~~~~al~~~~~~~-~~i~Ii~dGGIr~g~Dv~KALalGAdaV~iGr~~l~~~~-~G~~gv 277 (310)
T d1vcfa1 200 VEEWVRFGEVRHPELCEIGIPTARAILEVREVL-PHLPLVASGGVYTGTDGAKALALGADLLAVARPLLRPAL-EGAERV 277 (310)
T ss_dssp HHHTC--------CCTTCSCBHHHHHHHHHHHC-SSSCEEEESSCCSHHHHHHHHHHTCSEEEECGGGHHHHT-TCHHHH
T ss_pred cccccccCchhhhhhhhcchHHHHHHHHHHhhc-CCCeEEeCCCCCchHHHHHHHHhCCCEeeEhHHHHHHhc-cCHHHH
Confidence 23567888898887654 589999999999999999999999999999999999865 589999
Q ss_pred HHHHHHHHHHHHHHHHHhCCCChhhhcccc
Q 017718 322 RRVLEMLREEFELAMALSGCRSLKEITRDH 351 (367)
Q Consensus 322 ~~~i~~l~~el~~~m~~~G~~si~~l~~~~ 351 (367)
.++++.|++||+.+|.++|++|++||++..
T Consensus 278 ~~~l~~l~~El~~~m~~~G~~~i~el~g~~ 307 (310)
T d1vcfa1 278 AAWIGDYLEELRTALFAIGARNPKEARGRV 307 (310)
T ss_dssp HHHHHHHHHHHHHHHHHHTCSSGGGGTTCE
T ss_pred HHHHHHHHHHHHHHHHHhCCCCHHHHhhhh
Confidence 999999999999999999999999998653
|
| >d1eepa_ c.1.5.1 (A:) Inosine monophosphate dehydrogenase (IMPDH) {Lyme disease spirochete (Borrelia burgdorferi) [TaxId: 139]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Inosine monophosphate dehydrogenase (IMPDH) family: Inosine monophosphate dehydrogenase (IMPDH) domain: Inosine monophosphate dehydrogenase (IMPDH) species: Lyme disease spirochete (Borrelia burgdorferi) [TaxId: 139]
Probab=99.92 E-value=8.8e-24 Score=206.31 Aligned_cols=255 Identities=20% Similarity=0.287 Sum_probs=175.9
Q ss_pred ccccceeecccc-CCCCCCccceeE-cCeeeccceEeCcccchhccCChhhHHHHHHHHHcCCceeecCCCCCCHHHHHh
Q 017718 42 AFSRILFRPRIL-IDVSKIDMNTTV-LGFKISMPIMIAPTAMQKMAHPEGEYATARAASAAGTIMTLSSWSTSSVEEVAS 119 (367)
Q Consensus 42 ~~~~i~l~pr~l-~~~~~vd~st~i-~g~~l~~Pi~iAPm~~~~l~~~~~e~~~a~aa~~~G~~~~vs~~~~~~~e~i~~ 119 (367)
.||++.|+|..- ...+++||+++| .+.++..||+-|||-..+ +..+|.+.+++|...++. ..+++|+..+
T Consensus 9 tfDDVlLvP~~st~~~~~vdl~~~~t~~~~l~iPIisA~MDtVt------~~~mAi~ma~~GGlgVih--r~~~ie~q~~ 80 (388)
T d1eepa_ 9 TFDDVSLIPRKSSVLPSEVSLKTQLTKNISLNIPFLSSAMDTVT------ESQMAIAIAKEGGIGIIH--KNMSIEAQRK 80 (388)
T ss_dssp CGGGEEECCCCCCSCGGGCCCCEESSSSCEESSSEEECCCTTTC------SHHHHHHHHHHTSEEEEC--SSSCHHHHHH
T ss_pred CcccEEEeCCCCCCCHHHceeeEEeeCCEecCCCEEecCCCCCC------CHHHHHHHHHCCCEEEEe--CCCCHHHHHH
Confidence 599999999543 345789999999 679999999999996553 789999999999998885 3446665432
Q ss_pred hCC---CceEEE--------------Ee---------------------e----------------cCCHHHHHHHHHHH
Q 017718 120 TGP---GIRFFQ--------------LY---------------------V----------------YKDRNVVAQLVRRA 145 (367)
Q Consensus 120 ~~~---~~~~~Q--------------Ly---------------------~----------------~~d~~~~~~~l~ra 145 (367)
... ...+.. ++ + ... +...+.++.+
T Consensus 81 ~v~~Vk~~~~~~~~~~~~d~~~~~~~~~t~~~~~~~~~a~~d~~~~~~~p~~~~d~~~~l~vgaAvg~~-~~~~~ra~~L 159 (388)
T d1eepa_ 81 EIEKVKTYKFQKTINTNGDTNEQKPEIFTAKQHLEKSDAYKNAEHKEDFPNACKDLNNKLRVGAAVSID-IDTIERVEEL 159 (388)
T ss_dssp HHHHHHTCC--------------------------------------CCTTCCBCTTSCBCCEEEECSC-TTHHHHHHHH
T ss_pred HHHHhhhccccccccccCccccccchhhhhhhhhhhhHHHHhHHHHhhhhHHHhhhhccchhhhccCCC-HHHHHHHHHH
Confidence 100 000000 00 0 000 1112223333
Q ss_pred HHcCCcEEEEecCCCCCCchhHHhhhhcCCCCccccccccccccCccccccchhhHHHhhhccCccccHHHHHhhc-CCC
Q 017718 146 ERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLTLKNFQGLDLGKMDEANDSGLAAYVAGQIDRSLSWKWLQTIT-KLP 224 (367)
Q Consensus 146 ~~~G~~ai~itvd~p~~g~r~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~l~~~~-~~P 224 (367)
.++|++.++| |+.. ++ .+++.. ..+++|+.. ++|
T Consensus 160 ~~aG~D~ivI--D~Ah----------G~---------------------------s~~~~~------~i~~ik~~~~~v~ 194 (388)
T d1eepa_ 160 VKAHVDILVI--DSAH----------GH---------------------------STRIIE------LIKKIKTKYPNLD 194 (388)
T ss_dssp HHTTCSEEEE--CCSC----------CS---------------------------SHHHHH------HHHHHHHHCTTCE
T ss_pred Hhhccceeee--eccc----------cc---------------------------hHHHHH------HHHHHHHHCCCCc
Confidence 4455555544 2111 00 001100 223777665 799
Q ss_pred EEEEecCCHHHHHHHHHcCCcEEEEcCCCCC------CCCCccchHHHHHHHHHHhcC-CCcEEEecCCCCHHHHHHHHH
Q 017718 225 ILVKGVLTAEDARIAVQAGAAGIIVSNHGAR------QLDYVPATIMALEEVVKATQG-RIPVFLDGGVRRGTDVFKALA 297 (367)
Q Consensus 225 v~vK~v~~~~~a~~~~~~G~d~i~vs~~gg~------~~~~~~~~~~~l~~i~~~~~~-~~~via~GGI~~~~dv~kal~ 297 (367)
|++..+.+.+.++.++++|||+|.|.-.+|. ....|.|.+.++.++.+...+ .+|||+||||+++.|++|||+
T Consensus 195 vIaGNV~T~e~a~~L~~~GaD~VkVGiGpGs~CtTr~~~GvG~pq~sai~~~~~~~~~~~vpiIADGGi~~~Gdi~KAla 274 (388)
T d1eepa_ 195 LIAGNIVTKEAALDLISVGADCLKVGIGPGSICTTRIVAGVGVPQITAICDVYEACNNTNICIIADGGIRFSGDVVKAIA 274 (388)
T ss_dssp EEEEEECSHHHHHHHHTTTCSEEEECSSCSTTSHHHHHHCCCCCHHHHHHHHHHHHTTSSCEEEEESCCCSHHHHHHHHH
T ss_pred eeeccccCHHHHHHHHhcCCCeeeeccccccccccccccccCcchHHHHHHHHHHhccCCceEEeccccCcCCceeeeEE
Confidence 9999999999999999999999999654442 134577889999898877654 799999999999999999999
Q ss_pred cCCCEEEechHHH--------------------HHhhc-------------------------cChH-------HHHHHH
Q 017718 298 LGASGIFIGRPVV--------------------YSLAA-------------------------EGEK-------GVRRVL 325 (367)
Q Consensus 298 lGAd~V~ig~~~l--------------------~~l~~-------------------------~G~~-------~v~~~i 325 (367)
+|||+||+|++|. ++++. +|.+ .+.+++
T Consensus 275 ~GAd~VMlG~~lAg~~Espg~~~~~~g~~~k~~~gm~S~~a~~~g~~~~~~~~~~~~~~~~~~EG~~~~v~~~G~~~~~~ 354 (388)
T d1eepa_ 275 AGADSVMIGNLFAGTKESPSEEIIYNGKKFKSYVGMGSISAMKRGSKSRYFQLENNEPKKLVPEGIEGMVPYSGKLKDIL 354 (388)
T ss_dssp HTCSEEEECHHHHTBTTSSSCEEEETTEEEEC------------------------------------CEECCBCHHHHH
T ss_pred eccceeecchhhhcccCCCceEEEeCCcEeecccccccHHHHhccccccccccccccccccccCceEEEeCCCCCHHHHH
Confidence 9999999999883 22111 1111 267889
Q ss_pred HHHHHHHHHHHHHhCCCChhhhccc
Q 017718 326 EMLREEFELAMALSGCRSLKEITRD 350 (367)
Q Consensus 326 ~~l~~el~~~m~~~G~~si~~l~~~ 350 (367)
..|...|+..|.++|+.+|+||+..
T Consensus 355 ~~l~gglrs~m~y~Ga~~l~e~~~~ 379 (388)
T d1eepa_ 355 TQLKGGLMSGMGYLGAATISDLKIN 379 (388)
T ss_dssp HHHHHHHHHHHHHHTCSSHHHHHHS
T ss_pred HHHHHHHHHHhhccCcccHHHHhhC
Confidence 9999999999999999999999853
|
| >d1zfja1 c.1.5.1 (A:2-94,A:221-492) Inosine monophosphate dehydrogenase (IMPDH) {Streptococcus pyogenes [TaxId: 1314]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Inosine monophosphate dehydrogenase (IMPDH) family: Inosine monophosphate dehydrogenase (IMPDH) domain: Inosine monophosphate dehydrogenase (IMPDH) species: Streptococcus pyogenes [TaxId: 1314]
Probab=99.90 E-value=1e-22 Score=196.75 Aligned_cols=255 Identities=19% Similarity=0.247 Sum_probs=181.8
Q ss_pred ccccceeecccc-CCCCCCccceeEc-CeeeccceEeCcccchhccCChhhHHHHHHHHHcCCceeecCCCCCCHHHHHh
Q 017718 42 AFSRILFRPRIL-IDVSKIDMNTTVL-GFKISMPIMIAPTAMQKMAHPEGEYATARAASAAGTIMTLSSWSTSSVEEVAS 119 (367)
Q Consensus 42 ~~~~i~l~pr~l-~~~~~vd~st~i~-g~~l~~Pi~iAPm~~~~l~~~~~e~~~a~aa~~~G~~~~vs~~~~~~~e~i~~ 119 (367)
.||++.|+|... .+.+++|++++|- ...+..||+-|||...+ +..++.+..++|...++.-+ .+.++..+
T Consensus 13 ~fdDVllvP~~st~~s~~vdl~~~it~~~~~~iPIIsA~MDtV~------~~~mA~~ls~~Gglgvlhr~--~~~~e~~~ 84 (365)
T d1zfja1 13 TFDDVLLIPAESHVLPNEVDLKTKLADNLTLNIPIITAAMDTVT------GSKMAIAIARAGGLGVIHKN--MSITEQAE 84 (365)
T ss_dssp CGGGEEECCCCCCSCGGGCCCCEEEETTEEESSSEEECCCTTTC------SHHHHHHHHHTTCEEEECCS--SCHHHHHH
T ss_pred CcceEEEeCCCCCcCHhHceeeEEeeCCcccCCCEEECCCCCcC------CHHHHHHHHHCCCceEEcCc--cCHHHHHH
Confidence 799999999544 4457999999994 68999999999995443 67999999999999888643 34554332
Q ss_pred h------CCCceEEEEeecCCHHHHHHHHHHHHHcCCcEEEEecCCCCCCchhHHhhhhcCCCCccccccccccccCccc
Q 017718 120 T------GPGIRFFQLYVYKDRNVVAQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLTLKNFQGLDLGKMD 193 (367)
Q Consensus 120 ~------~~~~~~~QLy~~~d~~~~~~~l~ra~~~G~~ai~itvd~p~~g~r~~~~~~~~~~p~~~~~~~~~~~~~~~~~ 193 (367)
. ......+..-.+..++. .+.++.+.++|++.|+| |... ++.
T Consensus 85 ~~~~~~~~~~~~~v~aavGv~~~~-~er~~~l~~agvd~ivI--D~A~----------G~s------------------- 132 (365)
T d1zfja1 85 EVRKVKRSEGRLLVAAAVGVTSDT-FERAEALFEAGADAIVI--DTAH----------GHS------------------- 132 (365)
T ss_dssp HHHHHHHHTSCBCCEEEECSSTTH-HHHHHHHHHHTCSEEEE--CCSC----------TTC-------------------
T ss_pred HhhhhhhccCceEEEEEeccCchH-HHHHHHHHHcCCCEEEE--ECCc----------ccc-------------------
Confidence 1 01112222222223322 24556666789999876 4221 110
Q ss_pred cccchhhHHHhhhccCccccHHHHHhhc-CCCEEEEecCCHHHHHHHHHcCCcEEEEcCCCCC------CCCCccchHHH
Q 017718 194 EANDSGLAAYVAGQIDRSLSWKWLQTIT-KLPILVKGVLTAEDARIAVQAGAAGIIVSNHGAR------QLDYVPATIMA 266 (367)
Q Consensus 194 ~~~~~~~~~~~~~~~d~~~~~~~l~~~~-~~Pv~vK~v~~~~~a~~~~~~G~d~i~vs~~gg~------~~~~~~~~~~~ 266 (367)
..+.. ..+++|+.. ++||++-.+.+.+.++.+.++|||+|.|.-.+|. +...+.|.+.+
T Consensus 133 --------~~~~~------~i~~ik~~~~~~~iIaGNV~T~e~a~~L~~aGaD~VkVGiG~Gs~CTTr~~tGvGvPq~sa 198 (365)
T d1zfja1 133 --------AGVLR------KIAEIRAHFPNRTLIAGNIATAEGARALYDAGVDVVKVGIGPGSICTTRVVAGVGVPQVTA 198 (365)
T ss_dssp --------HHHHH------HHHHHHHHCSSSCEEEEEECSHHHHHHHHHTTCSEEEECSSCCTTBCHHHHTCCCCCHHHH
T ss_pred --------cchhH------HHHHHHhhCCCcceeecccccHHHHHHHHhcCCceEEeeecccccccCcceeeeeccchhH
Confidence 00000 223666666 6899999999999999999999999999654443 13346788888
Q ss_pred HHHHHHHhc-CCCcEEEecCCCCHHHHHHHHHcCCCEEEechHHHH--------------------Hhhc----------
Q 017718 267 LEEVVKATQ-GRIPVFLDGGVRRGTDVFKALALGASGIFIGRPVVY--------------------SLAA---------- 315 (367)
Q Consensus 267 l~~i~~~~~-~~~~via~GGI~~~~dv~kal~lGAd~V~ig~~~l~--------------------~l~~---------- 315 (367)
+.++.+... ..+|||+||||+++.|++|||++|||+||+|++|.- +++.
T Consensus 199 i~~~~~~~~~~~~~iIADGGi~~~GDi~KAla~GAd~VMlG~~lAg~~EsPG~~~~~~g~~~k~~~Gm~s~~a~~~~~~~ 278 (365)
T d1zfja1 199 IYDAAAVAREYGKTIIADGGIKYSGDIVKALAAGGNAVMLGSMFAGTDEAPGETEIYQGRKYKTYRGMGSIAAMKKGSSD 278 (365)
T ss_dssp HHHHHHHHHHTTCEEEEESCCCSHHHHHHHHHTTCSEEEESTTTTTBSSCCCCEEEETTEEEEEEECTTSHHHHCC----
T ss_pred HHHHHHHHHhCCceEEecCCcCcchhhhhhhhccCCEEEecchhccccCCCCcEEEECCeEeeecCCcccHhhhhccccc
Confidence 888866543 279999999999999999999999999999998721 1100
Q ss_pred ---------------cCh-------HHHHHHHHHHHHHHHHHHHHhCCCChhhhccc
Q 017718 316 ---------------EGE-------KGVRRVLEMLREEFELAMALSGCRSLKEITRD 350 (367)
Q Consensus 316 ---------------~G~-------~~v~~~i~~l~~el~~~m~~~G~~si~~l~~~ 350 (367)
+|. ..+.+.+..|...|+..|.++|+++|+||++.
T Consensus 279 r~~~~~~~~~~~~~~eG~~~~v~~~G~~~~~~~~l~gglrs~m~y~G~~~l~e~~~~ 335 (365)
T d1zfja1 279 RYFQGSVNEANKLVPEGIEGRVAYKGAASDIVFQMLGGIRSGMGYVGAGDIQELHEN 335 (365)
T ss_dssp ----------CCCCCSBCEEEEECCBCHHHHHHHHHHHHHHHHHHTTCSSHHHHHHH
T ss_pred ccccccccccccccccCceEEeccCCCHHHHHHHHHHHHHHHHhhcCCCcHHHHhhC
Confidence 110 12678899999999999999999999999854
|
| >d1vrda1 c.1.5.1 (A:1-85,A:213-457) Inosine monophosphate dehydrogenase (IMPDH) {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Inosine monophosphate dehydrogenase (IMPDH) family: Inosine monophosphate dehydrogenase (IMPDH) domain: Inosine monophosphate dehydrogenase (IMPDH) species: Thermotoga maritima [TaxId: 2336]
Probab=99.89 E-value=5.5e-22 Score=189.49 Aligned_cols=253 Identities=21% Similarity=0.312 Sum_probs=179.4
Q ss_pred ccccceeecccc-CCCCCCccceeEc-CeeeccceEeCcccchhccCChhhHHHHHHHHHcCCceeecCCCCCCHHHHHh
Q 017718 42 AFSRILFRPRIL-IDVSKIDMNTTVL-GFKISMPIMIAPTAMQKMAHPEGEYATARAASAAGTIMTLSSWSTSSVEEVAS 119 (367)
Q Consensus 42 ~~~~i~l~pr~l-~~~~~vd~st~i~-g~~l~~Pi~iAPm~~~~l~~~~~e~~~a~aa~~~G~~~~vs~~~~~~~e~i~~ 119 (367)
.||++.|+|... ....++|++|++- ...+..||+-|||...+ +..++.+..++|...+++.. .+.++..+
T Consensus 6 tfdDVllvP~~s~~~sr~vdl~t~lt~~l~~~iPIIaa~MdtV~------~~~mA~als~~GGlGvi~r~--~~~e~~~~ 77 (330)
T d1vrda1 6 TFDDVLLVPQYSEVLPKDVKIDTRLTRQIRINIPLVSAAMDTVT------EAALAKALAREGGIGIIHKN--LTPDEQAR 77 (330)
T ss_dssp CGGGEEECCCCCCCCGGGSCCCEESSSSCEESSSEEECCCTTTC------SHHHHHHHHTTTCEEEECSS--SCHHHHHH
T ss_pred ccccEEEeCCCCCcccccceEEEEEecCcccCCCEEeCCCCCcC------CHHHHHHHHHCCCeEEeecc--cchhhhHH
Confidence 699999999764 2345789999985 57899999999996553 67999999999998888643 34444321
Q ss_pred ------hCCCceEEEEeecCCHHHHHHHHHHHHHcCCcEEEEecCCCCCCchhHHhhhhcCCCCccccccccccccCccc
Q 017718 120 ------TGPGIRFFQLYVYKDRNVVAQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLTLKNFQGLDLGKMD 193 (367)
Q Consensus 120 ------~~~~~~~~QLy~~~d~~~~~~~l~ra~~~G~~ai~itvd~p~~g~r~~~~~~~~~~p~~~~~~~~~~~~~~~~~ 193 (367)
........-+ +.+++ ..+.++.+.++|++.++|.+- . ++ +
T Consensus 78 ~i~~vk~~~~~v~~~v--gv~~~-~~e~~~~li~agvd~ivId~A--~----------G~--~----------------- 123 (330)
T d1vrda1 78 QVSIVKKTRLLVGAAV--GTSPE-TMERVEKLVKAGVDVIVIDTA--H----------GH--S----------------- 123 (330)
T ss_dssp HHHHHHTCCBCCEEEE--CSSTT-HHHHHHHHHHTTCSEEEECCS--C----------CS--S-----------------
T ss_pred HHHHHhhhccEEEEEE--ecCHH-HHHHHHHHHHCCCCEEEEecC--C----------CC--c-----------------
Confidence 1111122222 22333 234566777899998877332 1 11 0
Q ss_pred cccchhhHHHhhhccCccccHHHHHhhc-CCCEEEEecCCHHHHHHHHHcCCcEEEEcCCCCCC------CCCccchHHH
Q 017718 194 EANDSGLAAYVAGQIDRSLSWKWLQTIT-KLPILVKGVLTAEDARIAVQAGAAGIIVSNHGARQ------LDYVPATIMA 266 (367)
Q Consensus 194 ~~~~~~~~~~~~~~~d~~~~~~~l~~~~-~~Pv~vK~v~~~~~a~~~~~~G~d~i~vs~~gg~~------~~~~~~~~~~ 266 (367)
..+.. ..+++|+.. ++||++..+.+.+.++.+.++|||+|.|...+|.. ...+.+.+..
T Consensus 124 --------~~~~~------~ik~ik~~~~~~~viaGnV~t~~~a~~l~~~GaD~v~VGig~Gs~ctt~~~~G~g~p~~sa 189 (330)
T d1vrda1 124 --------RRVIE------TLEMIKADYPDLPVVAGNVATPEGTEALIKAGADAVKVGVGPGSICTTRVVAGVGVPQLTA 189 (330)
T ss_dssp --------HHHHH------HHHHHHHHCTTSCEEEEEECSHHHHHHHHHTTCSEEEECSSCSTTCHHHHHHCCCCCHHHH
T ss_pred --------hhHHH------HHHHHHHhCCCCCEEeechhHHHHHHHHHHcCCCEEeeccccCccccccceeccccccchh
Confidence 00000 123666555 69999999999999999999999999995433321 1235667777
Q ss_pred HHHHHHHhcC-CCcEEEecCCCCHHHHHHHHHcCCCEEEechHHHHHhhccC----------------------------
Q 017718 267 LEEVVKATQG-RIPVFLDGGVRRGTDVFKALALGASGIFIGRPVVYSLAAEG---------------------------- 317 (367)
Q Consensus 267 l~~i~~~~~~-~~~via~GGI~~~~dv~kal~lGAd~V~ig~~~l~~l~~~G---------------------------- 317 (367)
+.++.+.... ++|||+||||+++.|++|||++|||+||+|+.|.-...+.|
T Consensus 190 i~~~~~~~~~~~vpvIAdGGi~~~gdiakAla~GAd~Vm~Gs~fa~~~E~pg~~~~~~g~~~k~~~g~~s~~~~~~~~~~ 269 (330)
T d1vrda1 190 VMECSEVARKYDVPIIADGGIRYSGDIVKALAAGAESVMVGSIFAGTEEAPGETILYQGRKYKAYRGMGSLGAMRSGSAD 269 (330)
T ss_dssp HHHHHHHHHTTTCCEEEESCCCSHHHHHHHHHTTCSEEEESHHHHTBTTSSSEEEEETTEEEEECBCCC-----------
T ss_pred HHHHHHHHHhcCceEEecCCcccCCchheeeeccCceeeecchheeecccCccEEEECCceeeeccccccccccccCchh
Confidence 7676655433 79999999999999999999999999999998853111100
Q ss_pred -----------hH----------HHHHHHHHHHHHHHHHHHHhCCCChhhhccc
Q 017718 318 -----------EK----------GVRRVLEMLREEFELAMALSGCRSLKEITRD 350 (367)
Q Consensus 318 -----------~~----------~v~~~i~~l~~el~~~m~~~G~~si~~l~~~ 350 (367)
+| .+.++++.|...|+..|.++|+++|+||++.
T Consensus 270 ~~~~~~~~~~~~eG~~~~v~~~g~~~~~~~~l~gglrs~~~y~G~~~l~~~~~~ 323 (330)
T d1vrda1 270 RYGQEGENKFVPEGIEGMVPYKGTVKDVVHQLVGGLRSGMGYIGARTIKELQEK 323 (330)
T ss_dssp --------------CBCCEECCBCHHHHHHHHHHHHHHHHHHHTCSSHHHHHHH
T ss_pred hccccccccccCCCcEEecCCCCCHHHHHHHHHHHHHHHHhhcCcchHHHHhcC
Confidence 12 2788999999999999999999999999875
|
| >d1gtea2 c.1.4.1 (A:533-844) Dihydropyrimidine dehydrogenase, domain 4 {Pig (Sus scrofa) [TaxId: 9823]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: FMN-linked oxidoreductases family: FMN-linked oxidoreductases domain: Dihydropyrimidine dehydrogenase, domain 4 species: Pig (Sus scrofa) [TaxId: 9823]
Probab=99.89 E-value=3.5e-22 Score=189.73 Aligned_cols=233 Identities=20% Similarity=0.265 Sum_probs=163.5
Q ss_pred cceeEcCeeeccceEeCcccchhccCChhhHHHHHHHHHcCCceeec-CCCC----------------------------
Q 017718 61 MNTTVLGFKISMPIMIAPTAMQKMAHPEGEYATARAASAAGTIMTLS-SWST---------------------------- 111 (367)
Q Consensus 61 ~st~i~g~~l~~Pi~iAPm~~~~l~~~~~e~~~a~aa~~~G~~~~vs-~~~~---------------------------- 111 (367)
+||+|+|++|++||++|+.... .+....+.+.++|+.+++. |.+.
T Consensus 1 Lsv~~~Gl~l~nPi~~Asg~~~------~~~~~~~~~~~~G~G~vv~ktvt~~~~~~~n~~pr~~~~~~~~~~~~~~~~~ 74 (312)
T d1gtea2 1 ISVEMAGLKFINPFGLASAAPT------TSSSMIRRAFEAGWGFALTKTFSLDKDIVTNVSPRIVRGTTSGPMYGPGQSS 74 (312)
T ss_dssp CCEEETTEEESSSEEECSSGGG------SSHHHHHHHHHHTCSEEECCCBCCGGGCCCCCSSCEEECCTTCSCCSSCCSC
T ss_pred CcEEECCEEcCCCcEECCcCCC------CCHHHHHHHHHcCCcEEEEeeecCCccccCCCCCcEEeccCCcccccccccc
Confidence 6899999999999999984333 2678889999999887752 2210
Q ss_pred ---------CCH----HHHH---hhCC-CceEEEEeecCCHHHHHHHHHHHHHcCCcEEEEecCCCCCCchhHHhhhhcC
Q 017718 112 ---------SSV----EEVA---STGP-GIRFFQLYVYKDRNVVAQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFT 174 (367)
Q Consensus 112 ---------~~~----e~i~---~~~~-~~~~~QLy~~~d~~~~~~~l~ra~~~G~~ai~itvd~p~~g~r~~~~~~~~~ 174 (367)
... +++. ...+ .+....+....+.+...+.++.++++|++++.+|+.||...... + +
T Consensus 75 ~~n~~g~~~~g~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~d~~~~a~~~~~~gad~lelN~scPn~~~~~-~----~- 148 (312)
T d1gtea2 75 FLNIELISEKTAAYWCQSVTELKADFPDNIVIASIMCSYNKNDWMELSRKAEASGADALELNLSCPHGMGER-G----M- 148 (312)
T ss_dssp EEECCCSCSSCHHHHHHHHHHHHHHCTTSEEEEEECCCSCHHHHHHHHHHHHHTTCSEEEEECCCBCCCC----------
T ss_pred ccccccccccchhhhhhhhccccccccccccccccccccchhHHHHHHHHhccCCCCeEeeccCCCCccccc-c----c-
Confidence 001 1111 1122 33344444456777778888889999999999999999731110 0 0
Q ss_pred CCCccccccccccccCccccccchhhHHHhhhccCccc--cH-HHHHhhcCCCEEEEecCC----HHHHHHHHHcCCcEE
Q 017718 175 LPPFLTLKNFQGLDLGKMDEANDSGLAAYVAGQIDRSL--SW-KWLQTITKLPILVKGVLT----AEDARIAVQAGAAGI 247 (367)
Q Consensus 175 ~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~--~~-~~l~~~~~~Pv~vK~v~~----~~~a~~~~~~G~d~i 247 (367)
.. ... .++.. .. +++|+.+++||++|.... .+.++.+.++|+|+|
T Consensus 149 ----------~~----------------~~~--~~~~~~~~i~~~v~~~~~~pv~vKl~~~~~~~~~i~~~~~~~g~~gi 200 (312)
T d1gtea2 149 ----------GL----------------ACG--QDPELVRNICRWVRQAVQIPFFAKLTPNVTDIVSIARAAKEGGADGV 200 (312)
T ss_dssp -----------S----------------BGG--GCHHHHHHHHHHHHHHCSSCEEEEECSCSSCHHHHHHHHHHHTCSEE
T ss_pred ----------ch----------------hhh--hhHHHHHHHHHHHhhccCCceeecccccchhHHHHHHHHHHhcccce
Confidence 00 000 02211 22 378888899999998732 344788899999999
Q ss_pred EEcCCC-CCC------------------CCC---cc----chHHHHHHHHHHhcCCCcEEEecCCCCHHHHHHHHHcCCC
Q 017718 248 IVSNHG-ARQ------------------LDY---VP----ATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGAS 301 (367)
Q Consensus 248 ~vs~~g-g~~------------------~~~---~~----~~~~~l~~i~~~~~~~~~via~GGI~~~~dv~kal~lGAd 301 (367)
++.|+- ++. ..+ |+ .+++.+.++++.++ ++|||++|||++++|++|+|++|||
T Consensus 201 ~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~gg~sG~~i~~~al~~v~~~~~~~~-~ipIi~~GGI~~~~d~~~~l~aGA~ 279 (312)
T d1gtea2 201 TATNTVSGLMGLKADGTPWPAVGAGKRTTYGGVSGTAIRPIALRAVTTIARALP-GFPILATGGIDSAESGLQFLHSGAS 279 (312)
T ss_dssp EECCCEEECCCBCTTSCBSSCBTTTTBBCCEEEESGGGHHHHHHHHHHHHHHST-TCCEEEESSCCSHHHHHHHHHTTCS
T ss_pred EEEeecccccccccccccccccccccccccccccCcCcchhhHHHHHHHHHHcC-CCcEEEEcCCCCHHHHHHHHHcCCC
Confidence 998852 110 011 22 24677788877764 5999999999999999999999999
Q ss_pred EEEechHHHHHhhccChHHHHHHHHHHHHHHHHHHHHhCCC
Q 017718 302 GIFIGRPVVYSLAAEGEKGVRRVLEMLREEFELAMALSGCR 342 (367)
Q Consensus 302 ~V~ig~~~l~~l~~~G~~~v~~~i~~l~~el~~~m~~~G~~ 342 (367)
+|||||++++ +|+. +++.+.++|+.+|...|++
T Consensus 280 ~Vqv~ta~~~----~G~~----~i~~i~~~L~~~m~~~g~~ 312 (312)
T d1gtea2 280 VLQVCSAVQN----QDFT----VIQDYCTGLKALLYLKSIE 312 (312)
T ss_dssp EEEESHHHHT----SCTT----HHHHHHHHHHHHHHHTTCG
T ss_pred eeEECHhhhc----cChH----HHHHHHHHHHHHHHHcCCC
Confidence 9999999987 5765 7888999999999999973
|
| >d1jr1a1 c.1.5.1 (A:17-112,A:233-514) Inosine monophosphate dehydrogenase (IMPDH) {Chinese hamster (Cricetulus griseus) [TaxId: 10029]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Inosine monophosphate dehydrogenase (IMPDH) family: Inosine monophosphate dehydrogenase (IMPDH) domain: Inosine monophosphate dehydrogenase (IMPDH) species: Chinese hamster (Cricetulus griseus) [TaxId: 10029]
Probab=99.89 E-value=4e-23 Score=200.69 Aligned_cols=254 Identities=19% Similarity=0.262 Sum_probs=180.2
Q ss_pred ccccceeecccc-CCCCCCccceeE-cCeeeccceEeCcccchhccCChhhHHHHHHHHHcCCceeecCCCCCCHHHHHh
Q 017718 42 AFSRILFRPRIL-IDVSKIDMNTTV-LGFKISMPIMIAPTAMQKMAHPEGEYATARAASAAGTIMTLSSWSTSSVEEVAS 119 (367)
Q Consensus 42 ~~~~i~l~pr~l-~~~~~vd~st~i-~g~~l~~Pi~iAPm~~~~l~~~~~e~~~a~aa~~~G~~~~vs~~~~~~~e~i~~ 119 (367)
.||++.|+|..- .+.+++|++++| ....+..||+-|||...+ +..+|.+..++|...++.. ..++|+..+
T Consensus 15 tfdDVllvP~~st~~sr~V~l~t~lt~~~~l~iPIIsApMdtVt------~~~mA~als~~GGLGvLhr--~~~~e~~~~ 86 (378)
T d1jr1a1 15 TYNDFLILPGYIDFTADQVDLTSALTKKITLKTPLVSSPMDTVT------EAGMAIAMALTGGIGFIHH--NCTPEFQAN 86 (378)
T ss_dssp CGGGEEECCCCCCSCGGGCBCCEESSSSCEESSCEEECCCTTTC------SHHHHHHHHHHTCEEEECC--SSCHHHHHH
T ss_pred CcccEEEeCCCCCCcHHHceeeeEEECCccCCCCEEECCCCCcC------CHHHHHHHHHCCCeeEEcC--CCCHHHHHH
Confidence 489999999654 344689999999 678999999999996553 6799999999999988864 345554332
Q ss_pred h-------CCCceEE-----EEe----ecCCHHHHHHHHHHHHHcCCcEEEEecCCCCCCchhHHhhhhcCCCCcccccc
Q 017718 120 T-------GPGIRFF-----QLY----VYKDRNVVAQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLTLKN 183 (367)
Q Consensus 120 ~-------~~~~~~~-----QLy----~~~d~~~~~~~l~ra~~~G~~ai~itvd~p~~g~r~~~~~~~~~~p~~~~~~~ 183 (367)
. ...|... +|. .+.. +...+.++...++|++.+++.+-.+..
T Consensus 87 ev~~v~~~~~~p~~~~~~~~~l~v~aavg~~-~~~~~~~~~l~~agv~vi~id~a~g~~--------------------- 144 (378)
T d1jr1a1 87 EVRKVKKYEQYPLASKDAKKQLLCGAAIGTH-EDDKYRLDLLALAGVDVVVLDSSQGNS--------------------- 144 (378)
T ss_dssp HHHHHHTSCCCTTCCBCTTSCBCCEEEECSS-THHHHHHHHHHHHTCCEEEECCSSCCS---------------------
T ss_pred HHheehhhhhCcccccccccCEEEEEEeccC-HHHHHHHHHHHhhccceEeeeccCccc---------------------
Confidence 1 1111100 111 1111 222334555667899887764432110
Q ss_pred ccccccCccccccchhhHHHhhhccCccccHHHHHhhc-CCCEEEEecCCHHHHHHHHHcCCcEEEEcCCCCCC------
Q 017718 184 FQGLDLGKMDEANDSGLAAYVAGQIDRSLSWKWLQTIT-KLPILVKGVLTAEDARIAVQAGAAGIIVSNHGARQ------ 256 (367)
Q Consensus 184 ~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~l~~~~-~~Pv~vK~v~~~~~a~~~~~~G~d~i~vs~~gg~~------ 256 (367)
..+.. ..+++++.. ++||++-.+.+.+.|+.+.++|||+|.|...+|..
T Consensus 145 ------------------~~~~~------~i~~ik~~~~~~~iIaGnVaT~e~a~~L~~aGAD~VkVGiG~Gs~ctTr~~ 200 (378)
T d1jr1a1 145 ------------------IFQIN------MIKYMKEKYPNLQVIGGNVVTAAQAKNLIDAGVDALRVGMGCGSICITQEV 200 (378)
T ss_dssp ------------------HHHHH------HHHHHHHHSTTCEEEEEEECSHHHHHHHHHHTCSEEEECSSCSTTBCHHHH
T ss_pred ------------------hhhHH------HHHHHHHHCCCCceeecccccHHHHHHHHHhCCCEEeeccccccccccccc
Confidence 00000 123666655 78999999999999999999999999996544421
Q ss_pred CCCccchHHHHHHHHHHhcC-CCcEEEecCCCCHHHHHHHHHcCCCEEEechHHH--------------------HHhhc
Q 017718 257 LDYVPATIMALEEVVKATQG-RIPVFLDGGVRRGTDVFKALALGASGIFIGRPVV--------------------YSLAA 315 (367)
Q Consensus 257 ~~~~~~~~~~l~~i~~~~~~-~~~via~GGI~~~~dv~kal~lGAd~V~ig~~~l--------------------~~l~~ 315 (367)
...|.|.+..+.++.+...+ .+|||+||||+++.|++|||++|||+||+|++|. |+++.
T Consensus 201 tGvG~pq~sai~~~~~~a~~~~vpIIADGGi~~~gdiakAla~GAd~VMmGs~fAgt~EspG~~~~~~g~~~k~~~gm~S 280 (378)
T d1jr1a1 201 LACGRPQATAVYKVSEYARRFGVPVIADGGIQNVGHIAKALALGASTVMMGSLLAATTEAPGEYFFSDGIRLKKYRGMGS 280 (378)
T ss_dssp HCCCCCHHHHHHHHHHHHGGGTCCEEEESCCCSHHHHHHHHHTTCSEEEESTTTTTBTTSSSCCEESSSCEEEEEECTTS
T ss_pred cccCcccchhhhHHHHhhcccCCceecccccccCCceeeEEEeecceeeecceeeeeecccCccceecCceeeeccccch
Confidence 12366788888887766543 7999999999999999999999999999999884 12211
Q ss_pred ------------------------cCh-------HHHHHHHHHHHHHHHHHHHHhCCCChhhhcc
Q 017718 316 ------------------------EGE-------KGVRRVLEMLREEFELAMALSGCRSLKEITR 349 (367)
Q Consensus 316 ------------------------~G~-------~~v~~~i~~l~~el~~~m~~~G~~si~~l~~ 349 (367)
+|. ..+.+++..|...|+..|.++|+++|.||+.
T Consensus 281 ~~a~~~~~~~~~~~~~~~~~~~~~eG~~~~v~~~G~v~~~~~~l~gglrs~m~y~G~~~l~e~~~ 345 (378)
T d1jr1a1 281 LDAMDKHLSSQNRYFSEADKIKVAQGVSGAVQDKGSIHKFVPYLIAGIQHSCQDIGAKSLTQVRA 345 (378)
T ss_dssp TTTC----------------CCCCCBCEEEEECCBCHHHHHHHHHHHHHHHHHHTTCSBHHHHHH
T ss_pred hhhhhcccchhhhhccccccccCCCccEEeeccCCCHHHHHHHHHHHHHHhhhccCcCcHHHHHh
Confidence 111 1278899999999999999999999999975
|
| >d1pvna1 c.1.5.1 (A:2-99,A:231-494) Inosine monophosphate dehydrogenase (IMPDH) {Tritrichomonas foetus [TaxId: 5724]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Inosine monophosphate dehydrogenase (IMPDH) family: Inosine monophosphate dehydrogenase (IMPDH) domain: Inosine monophosphate dehydrogenase (IMPDH) species: Tritrichomonas foetus [TaxId: 5724]
Probab=99.88 E-value=2.2e-22 Score=194.71 Aligned_cols=252 Identities=20% Similarity=0.257 Sum_probs=179.5
Q ss_pred ccccceeeccccC-C--CCCCccceeEc--------CeeeccceEeCcccchhccCChhhHHHHHHHHHcCCceeecCCC
Q 017718 42 AFSRILFRPRILI-D--VSKIDMNTTVL--------GFKISMPIMIAPTAMQKMAHPEGEYATARAASAAGTIMTLSSWS 110 (367)
Q Consensus 42 ~~~~i~l~pr~l~-~--~~~vd~st~i~--------g~~l~~Pi~iAPm~~~~l~~~~~e~~~a~aa~~~G~~~~vs~~~ 110 (367)
.||++.|+|.... + -++||++++|. +..+..||+-|||-.. ++..+|.+..++|...++. .
T Consensus 10 tFdDVlLvP~~Sti~s~r~dVdl~~~l~~~~~~~~~~i~l~iPIIsAnMDTV------t~~~mA~~la~~Gglgvih--R 81 (362)
T d1pvna1 10 TFNEYLLIPGLSTVDCIPSNVNLSTPLVKFQKGQQSEINLKIPLVSAIMQSV------SGEKMAIALAREGGISFIF--G 81 (362)
T ss_dssp CGGGEEECCCCBCTTCCGGGCBCCEECSCEETTSCCSCEESSSEEECSCTTT------CSHHHHHHHHHTTCEEEEC--C
T ss_pred CccceEEeCCCCcCCCCccceeeeeEEEeeccccccccccCCcEEecCCCCc------CCHHHHHHHHHCCCEEEEe--e
Confidence 6999999998642 3 58999999873 5678999999999544 3789999999999988884 4
Q ss_pred CCCHHHHHhh----CC-CceEEEEeecCCHHHHHHHHHHHHHcCCcEEEEecCCCCCCchhHHhhhhcCCCCcccccccc
Q 017718 111 TSSVEEVAST----GP-GIRFFQLYVYKDRNVVAQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLTLKNFQ 185 (367)
Q Consensus 111 ~~~~e~i~~~----~~-~~~~~QLy~~~d~~~~~~~l~ra~~~G~~ai~itvd~p~~g~r~~~~~~~~~~p~~~~~~~~~ 185 (367)
..++|+..+. .. ...........+ ..+.++...++|++.+++.+ .. ++.
T Consensus 82 ~~~ie~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~L~~ag~d~i~IDv--Ah----------G~~----------- 135 (362)
T d1pvna1 82 SQSIESQAAMVHAVKNFRYLVGAGINTRD---FRERVPALVEAGADVLCIDS--SD----------GFS----------- 135 (362)
T ss_dssp SSCHHHHHHHHHHHHTCCCCCEEEECSSS---HHHHHHHHHHHTCSEEEECC--SC----------CCB-----------
T ss_pred cCCHHHHHHHhhhhhhcccccccccchhh---hHHHHHHHhhcCceEEeech--hc----------cch-----------
Confidence 4566654422 11 111111111222 22345556678999887633 22 110
Q ss_pred ccccCccccccchhhHHHhhhccCccccHHHHHhhc--CCCEEEEecCCHHHHHHHHHcCCcEEEEcCCCCCC------C
Q 017718 186 GLDLGKMDEANDSGLAAYVAGQIDRSLSWKWLQTIT--KLPILVKGVLTAEDARIAVQAGAAGIIVSNHGARQ------L 257 (367)
Q Consensus 186 ~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~l~~~~--~~Pv~vK~v~~~~~a~~~~~~G~d~i~vs~~gg~~------~ 257 (367)
.++.. ..+++++.. ++||++..+.+.+.++.+.++|+|+|.|.-.+|.. .
T Consensus 136 ----------------~~v~~------~i~~ir~~~~~~~~IiAGNVaT~e~~~~L~~aGaD~vkVGIG~Gs~CTTr~~t 193 (362)
T d1pvna1 136 ----------------EWQKI------TIGWIREKYGDKVKVGAGNIVDGEGFRYLADAGADFIKIGIGGGSICITREQK 193 (362)
T ss_dssp ----------------HHHHH------HHHHHHHHHGGGSCEEEEEECSHHHHHHHHHHTCSEEEECSSCSTTBCHHHHT
T ss_pred ----------------hHHHH------HHHHHHHhhccceeeecccccCHHHHHHHHHhCCcEEEecccccccccchhhh
Confidence 00000 123454433 58999999999999999999999999996544431 2
Q ss_pred CCccchHHHHHHHHHHhc-------CCCcEEEecCCCCHHHHHHHHHcCCCEEEechHHH--------------------
Q 017718 258 DYVPATIMALEEVVKATQ-------GRIPVFLDGGVRRGTDVFKALALGASGIFIGRPVV-------------------- 310 (367)
Q Consensus 258 ~~~~~~~~~l~~i~~~~~-------~~~~via~GGI~~~~dv~kal~lGAd~V~ig~~~l-------------------- 310 (367)
..|.|.+.++.+++.+.. ..+|||+||||+++.|++|||++|||+||+|+.|-
T Consensus 194 GvG~Pq~sAv~e~a~~~~~~~~~~~~~v~iiaDGGi~~~gdi~KAla~GAd~VM~G~~lAg~~Espg~~~~~~g~~~k~~ 273 (362)
T d1pvna1 194 GIGRGQATAVIDVVAERNKYFEETGIYIPVCSDGGIVYDYHMTLALAMGADFIMLGRYFARFEESPTRKVTINGSVMKEY 273 (362)
T ss_dssp CBCCCHHHHHHHHHHHHHHHHHHHSEECCEEEESCCCSHHHHHHHHHTTCSEEEESHHHHTBTTSSSCEEEETTEEEEEE
T ss_pred ccCCchHHHHHHHHHHHHHhhhhcccCCceeeccccCcccceeEEEEEeccceeehhhhhcccccCCcceeeccceeeee
Confidence 346788888888865432 25999999999999999999999999999999873
Q ss_pred HHhhc--------------------cCh-------HHHHHHHHHHHHHHHHHHHHhCCCChhhhcc
Q 017718 311 YSLAA--------------------EGE-------KGVRRVLEMLREEFELAMALSGCRSLKEITR 349 (367)
Q Consensus 311 ~~l~~--------------------~G~-------~~v~~~i~~l~~el~~~m~~~G~~si~~l~~ 349 (367)
|+++. +|. ..+.+++..|...|+..|.++|+++|.||+.
T Consensus 274 ~Gm~S~~a~~~~~~~~~~~~~~~~~eG~~~~v~~~g~~~~~~~~l~gglrs~~~y~G~~~l~~~~~ 339 (362)
T d1pvna1 274 WGEGSSRARNWQRYDLGGKQKLSFEEGVDSYVPYAGKLKDNVEASLNKVKSTMCNCGALTIPQLQS 339 (362)
T ss_dssp ECTTSTTTCCGGGGCSSSCSSCSSCCBCEEEEECCBCHHHHHHHHHHHHHHHHHHTTCSBHHHHHH
T ss_pred eccccccccccccccccccccccCCCCcEEEeccCCCHHHHHHHHHHHHHHHHhhcCcCcHHHHHh
Confidence 22221 111 1388999999999999999999999999985
|
| >d1juba_ c.1.4.1 (A:) Dihydroorotate dehydrogenase {Lactococcus lactis, isozyme A [TaxId: 1358]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: FMN-linked oxidoreductases family: FMN-linked oxidoreductases domain: Dihydroorotate dehydrogenase species: Lactococcus lactis, isozyme A [TaxId: 1358]
Probab=99.86 E-value=1.2e-20 Score=178.48 Aligned_cols=237 Identities=19% Similarity=0.188 Sum_probs=159.3
Q ss_pred cceeEcCeeeccceEeCcccchhccCChhhHHHHHHHHHcCCceee-cCCCCC--------------------------C
Q 017718 61 MNTTVLGFKISMPIMIAPTAMQKMAHPEGEYATARAASAAGTIMTL-SSWSTS--------------------------S 113 (367)
Q Consensus 61 ~st~i~g~~l~~Pi~iAPm~~~~l~~~~~e~~~a~aa~~~G~~~~v-s~~~~~--------------------------~ 113 (367)
++|+|+|.++++||++|+.... .+....+.+..+|..+++ .|.+.. .
T Consensus 2 Ls~~~~Gl~l~nPi~~aag~~~------~~~~~~~~~~~~G~G~vv~ktit~~~~~gn~~pr~~~~~~~~~n~~G~~n~g 75 (311)
T d1juba_ 2 LNTTFANAKFANPFMNASGVHC------MTIEDLEELKASQAGAYITKSSTLEKREGNPLPRYVDLELGSINSMGLPNLG 75 (311)
T ss_dssp CCEEETTEEESSSEEECTTSSC------SSHHHHHHHHHSSCSCCBCCCBCSSCBCCSCSCCEEEETTEEEECCCCCBSC
T ss_pred eeEEECCEecCCCCEECCCCCC------CCHHHHHHHHHCCCcEEEEEEEeeccccCCCCCeEEEccccchhhhhhcCch
Confidence 6899999999999999973221 256788888899988765 332111 1
Q ss_pred HH----HHH----hhCC-CceEEEEeecCCHHHHHHHHHHHHHcC-CcEEEEecCCCCCCchhHHhhhhcCCCCcccccc
Q 017718 114 VE----EVA----STGP-GIRFFQLYVYKDRNVVAQLVRRAERAG-FKAIALTVDTPRLGRREADIKNRFTLPPFLTLKN 183 (367)
Q Consensus 114 ~e----~i~----~~~~-~~~~~QLy~~~d~~~~~~~l~ra~~~G-~~ai~itvd~p~~g~r~~~~~~~~~~p~~~~~~~ 183 (367)
.+ ++. +..+ .|.+..+. ..+.+...+..+..+.++ ++++.+|+.||..... +.
T Consensus 76 ~~~~~~~~~~~~~~~~~~~pvi~si~-~~~~~~~~~~~~~~~~~~~ad~ielNiscPn~~~~----------~~------ 138 (311)
T d1juba_ 76 FDYYLDYVLKNQKENAQEGPIFFSIA-GMSAAENIAMLKKIQESDFSGITELNLSCPNVPGE----------PQ------ 138 (311)
T ss_dssp HHHHHHHHHHHHHHTCSSSCCEEEEC-CSSHHHHHHHHHHHHHSCCCSEEEEESCCCCSSSC----------CC------
T ss_pred hHHHHHHHHHhhhhcccCCCceeecc-ccccchhHHHHHHHhhccccceeeecccccccccc----------cc------
Confidence 11 111 1111 34555554 334444445555556555 6777888888753100 00
Q ss_pred ccccccCccccccchhhHHHhhhccCccc--c-HHHHHhhcCCCEEEEecCC--HH----HHHHHHHcCCcEEEEcCCCC
Q 017718 184 FQGLDLGKMDEANDSGLAAYVAGQIDRSL--S-WKWLQTITKLPILVKGVLT--AE----DARIAVQAGAAGIIVSNHGA 254 (367)
Q Consensus 184 ~~~~~~~~~~~~~~~~~~~~~~~~~d~~~--~-~~~l~~~~~~Pv~vK~v~~--~~----~a~~~~~~G~d~i~vs~~gg 254 (367)
. . .++.. . .+++++..++|+++|.... .. .++.+.+.|++++...|+.+
T Consensus 139 --------~------------~--~~~~~~~~~~~~v~~~~~~pv~vKl~p~~~~~~~~~~~~~~~~~~~~~i~~~~~~~ 196 (311)
T d1juba_ 139 --------L------------A--YDFEATEKLLKEVFTFFTKPLGVKLPPYFDLVHFDIMAEILNQFPLTYVNSVNSIG 196 (311)
T ss_dssp --------G------------G--GCHHHHHHHHHHHTTTCCSCEEEEECCCCSHHHHHHHHHHHTTSCCCEEEECCCEE
T ss_pred --------c------------c--ccHHHHHHHHHHhhcccccceeecccccchhhHHHHHHHHHHhhccceEecccccc
Confidence 0 0 01111 1 2377788899999999853 21 26667788899998876422
Q ss_pred CC-----------C-----CCc---c----chHHHHHHHHHHhcCCCcEEEecCCCCHHHHHHHHHcCCCEEEechHHHH
Q 017718 255 RQ-----------L-----DYV---P----ATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFIGRPVVY 311 (367)
Q Consensus 255 ~~-----------~-----~~~---~----~~~~~l~~i~~~~~~~~~via~GGI~~~~dv~kal~lGAd~V~ig~~~l~ 311 (367)
.. . .+| + .+...+.++++.++.++|||++|||+|++|+++++.+|||+|+++|++++
T Consensus 197 ~~~~~~~~~~~~~~~~~~~~gG~sg~~l~~~al~~i~~i~~~~~~~~~Iig~GGI~s~~Da~~~i~aGA~~Vql~tal~~ 276 (311)
T d1juba_ 197 NGLFIDPEAESVVIKPKDGFGGIGGAYIKPTALANVRAFYTRLKPEIQIIGTGGIETGQDAFEHLLCGATMLQIGTALHK 276 (311)
T ss_dssp EEECEETTTTEESCSGGGGEEEEESGGGHHHHHHHHHHHHTTSCTTSEEEEESSCCSHHHHHHHHHHTCSEEEECHHHHH
T ss_pred ccccccccccccccccccccCCccccccCchHHHHHHHHHHhcCCCeeEEecCCcCCHHHHHHHHHcCCCceeeeHhhHh
Confidence 10 0 011 1 24455666666665689999999999999999999999999999999987
Q ss_pred HhhccChHHHHHHHHHHHHHHHHHHHHhCCCChhhhccc
Q 017718 312 SLAAEGEKGVRRVLEMLREEFELAMALSGCRSLKEITRD 350 (367)
Q Consensus 312 ~l~~~G~~~v~~~i~~l~~el~~~m~~~G~~si~~l~~~ 350 (367)
+|+. +++.+.+||+.+|...|++|++|+++.
T Consensus 277 ----~Gp~----~i~~i~~~L~~~m~~~G~~si~e~~G~ 307 (311)
T d1juba_ 277 ----EGPA----IFDRIIKELEEIMNQKGYQSIADFHGK 307 (311)
T ss_dssp ----HCTH----HHHHHHHHHHHHHHHHTCCSGGGTTTC
T ss_pred ----cChH----HHHHHHHHHHHHHHHcCCCCHHHhcCc
Confidence 4765 788999999999999999999999875
|
| >d1vhna_ c.1.4.1 (A:) Putative flavin oxidoreducatase TM0096 {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: FMN-linked oxidoreductases family: FMN-linked oxidoreductases domain: Putative flavin oxidoreducatase TM0096 species: Thermotoga maritima [TaxId: 2336]
Probab=99.86 E-value=3.1e-21 Score=182.66 Aligned_cols=235 Identities=21% Similarity=0.239 Sum_probs=169.8
Q ss_pred ceEeCcccchhccCChhhHHHHHHHHHcCCceeecCCCCC------C--HHHHHhh-CCCceEEEEeecCCHHHHHHHHH
Q 017718 73 PIMIAPTAMQKMAHPEGEYATARAASAAGTIMTLSSWSTS------S--VEEVAST-GPGIRFFQLYVYKDRNVVAQLVR 143 (367)
Q Consensus 73 Pi~iAPm~~~~l~~~~~e~~~a~aa~~~G~~~~vs~~~~~------~--~e~i~~~-~~~~~~~QLy~~~d~~~~~~~l~ 143 (367)
.|.+|||.+.+ |.++++.|.+.|..+++|+|-+. . ..++... ...|..+||+ ++|++.+.+.++
T Consensus 2 ki~LAPM~g~t------d~~fR~l~~~~g~~~~~Temi~~~~~~~~~~~~~~~~~~~~e~p~~~Ql~-g~~p~~~~~aa~ 74 (305)
T d1vhna_ 2 KVGLAPMAGYT------DSAFRTLAFEWGADFAFSEMVSAKGFLMNSQKTEELLPQPHERNVAVQIF-GSEPNELSEAAR 74 (305)
T ss_dssp EEEECCCTTTC------SHHHHHHHHTTTCCCEECSCEEHHHHHTTCHHHHHHSCCTTCTTEEEEEE-CSCHHHHHHHHH
T ss_pred eEEEECcCCCc------cHHHHHHHHHHCcCEEEECCEEechhhhCChhhHhhccCCCCCCeEEEEe-ccchhhhhhhhh
Confidence 57899998875 88999999999999999988432 1 1112211 1268999998 789998888876
Q ss_pred HHHHcCCcEEEEecCCCCCCchhHHhhhhcCCCCccccccccccccCccccccchhhHHHhhhccCccc--cH-HHHHhh
Q 017718 144 RAERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLTLKNFQGLDLGKMDEANDSGLAAYVAGQIDRSL--SW-KWLQTI 220 (367)
Q Consensus 144 ra~~~G~~ai~itvd~p~~g~r~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~--~~-~~l~~~ 220 (367)
.++ .|++.|++|++||+. +++.++ .+..++. +|++ .+ +.+++.
T Consensus 75 ~~~-~~~~~IdlN~GCP~~---------------~v~~~g----------------~Ga~Ll~--~p~~~~~iv~~~~~~ 120 (305)
T d1vhna_ 75 ILS-EKYKWIDLNAGCPVR---------------KVVKEG----------------AGGALLK--DLRHFRYIVRELRKS 120 (305)
T ss_dssp HHT-TTCSEEEEEECCCCH---------------HHHHTT----------------CGGGGGS--CHHHHHHHHHHHHHH
T ss_pred hhh-hheeeeeEEEEecch---------------hhcccc----------------cceeecc--CHHHHHHHhhhhhhh
Confidence 554 599999999999973 111111 1223443 4444 33 378888
Q ss_pred cCCCEEEEecC------CHHHHHHHHHcCCcEEEEcCCCCCCCCCccchHHHHHHHHHHhcCCCcEEEecCCCCHHHHHH
Q 017718 221 TKLPILVKGVL------TAEDARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFK 294 (367)
Q Consensus 221 ~~~Pv~vK~v~------~~~~a~~~~~~G~d~i~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~~~via~GGI~~~~dv~k 294 (367)
+++||.+|... ..+.++.+.++|++.|+|++.-..|.+.+++.++.+++++ .++|||++|||.+.+|+.+
T Consensus 121 ~~~pvsvK~RlG~d~~~~~~~~~~l~~~G~~~itvH~Rt~~q~~~~~a~~~~i~~~~----~~ipvi~NGdI~s~~d~~~ 196 (305)
T d1vhna_ 121 VSGKFSVKTRLGWEKNEVEEIYRILVEEGVDEVFIHTRTVVQSFTGRAEWKALSVLE----KRIPTFVSGDIFTPEDAKR 196 (305)
T ss_dssp CSSEEEEEEESCSSSCCHHHHHHHHHHTTCCEEEEESSCTTTTTSSCCCGGGGGGSC----CSSCEEEESSCCSHHHHHH
T ss_pred cccccccccccCcccchhhHHHHHHHHhCCcEEEechhhhhhccccchhhhHHHhhh----hhhhhhcccccccHHHHHH
Confidence 99999999983 2466899999999999994433346677888888886653 3799999999999999999
Q ss_pred HHH-cCCCEEEech-----HHHHHhhc----cCh---HHHHHHHHHHHHHHHHHHHHhCCC-Chhhhcccce
Q 017718 295 ALA-LGASGIFIGR-----PVVYSLAA----EGE---KGVRRVLEMLREEFELAMALSGCR-SLKEITRDHI 352 (367)
Q Consensus 295 al~-lGAd~V~ig~-----~~l~~l~~----~G~---~~v~~~i~~l~~el~~~m~~~G~~-si~~l~~~~l 352 (367)
++. .|+|+||||| ||+|.... .++ ....+.++.+.++++......|.. .+..++++..
T Consensus 197 ~l~~tg~dgVMiGRgal~nP~if~~i~~~l~~~~~~~~~~~e~~~~~~~~~~~~~~~~g~~~~l~~~rkhl~ 268 (305)
T d1vhna_ 197 ALEESGCDGLLVARGAIGRPWIFKQIKDFLRSGKYSEPSREEILRTFERHLELLIKTKGERKAVVEMRKFLA 268 (305)
T ss_dssp HHHHHCCSEEEESGGGTTCTTHHHHHHHHHHHSCCCCCCHHHHHHHHHHHHHHHHHHHCHHHHHHHHHTTHH
T ss_pred HHHhcCCCeEehhHHHHHhhhHhhhhhhhhcCCCcccchhHHHHHhHHHHHHHHHHhcCcchHHHHHHHHHH
Confidence 997 6999999999 77876431 111 124456777778888777777753 4556665543
|
| >d1ep3a_ c.1.4.1 (A:) Dihydroorotate dehydrogenase {Lactococcus lactis, isozyme B [TaxId: 1358]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: FMN-linked oxidoreductases family: FMN-linked oxidoreductases domain: Dihydroorotate dehydrogenase species: Lactococcus lactis, isozyme B [TaxId: 1358]
Probab=99.85 E-value=6.2e-21 Score=180.32 Aligned_cols=239 Identities=18% Similarity=0.205 Sum_probs=163.6
Q ss_pred CCCccceeEcCeeeccceEeCcccchhccCChhhHHHHHHHHHcCCceee-cCC--------------------------
Q 017718 57 SKIDMNTTVLGFKISMPIMIAPTAMQKMAHPEGEYATARAASAAGTIMTL-SSW-------------------------- 109 (367)
Q Consensus 57 ~~vd~st~i~g~~l~~Pi~iAPm~~~~l~~~~~e~~~a~aa~~~G~~~~v-s~~-------------------------- 109 (367)
+++.|+|+|+|++|++||++|+-.... +..+.+.+...|..+++ .+.
T Consensus 3 ~~~~L~~~~~Gl~l~nPi~~aAG~~~~------~~~~~~~~~~~g~G~v~~~ti~~~~~~gn~~pr~~~~~~~~~n~~g~ 76 (311)
T d1ep3a_ 3 ENNRLSVKLPGLDLKNPIIPASGCFGF------GEEYAKYYDLNKLGSIMVKATTLHPRFGNPTPRVAETASGMLNAIGL 76 (311)
T ss_dssp CCTTTCEEETTEEESSSEEECTTSSTT------STTGGGTSCGGGSSCEEEEEECSSCBCCCCSCCEEEETTEEEECCCC
T ss_pred CCCcceEEECCEEcCCCcEECCCCCCC------CHHHHHhhhhcCccEEEEeeEcccccCCCCCCeEeeecccccccccc
Confidence 578899999999999999999621111 22344444555554442 111
Q ss_pred CCCCHHHHH--------hhCC-CceEEEEeecCCHHHHHHHHHHHH-HcCCcEEEEecCCCCCCchhHHhhhhcCCCCcc
Q 017718 110 STSSVEEVA--------STGP-GIRFFQLYVYKDRNVVAQLVRRAE-RAGFKAIALTVDTPRLGRREADIKNRFTLPPFL 179 (367)
Q Consensus 110 ~~~~~e~i~--------~~~~-~~~~~QLy~~~d~~~~~~~l~ra~-~~G~~ai~itvd~p~~g~r~~~~~~~~~~p~~~ 179 (367)
.+..++.+. ...+ .|...|+. ..+++...+.+++.. .+|+++|.+|+.||..... .
T Consensus 77 ~~~g~~~~~~~~~~~~~~~~~~~pii~si~-~~~~~~~~~~~~~~~~~~g~d~ielN~~cP~~~~~-------~------ 142 (311)
T d1ep3a_ 77 QNPGLEVIMTEKLPWLNENFPELPIIANVA-GSEEADYVAVCAKIGDAANVKAIELNISCPNVKHG-------G------ 142 (311)
T ss_dssp CBCCHHHHHHTHHHHHHHHCTTSCEEEEEC-CSSHHHHHHHHHHHTTSTTEEEEEEECCSEEGGGT-------T------
T ss_pred cchhHHHHhhhhhhhhhcccCCCccccccc-chhhhHHHHHHHHHhhcccccccccccCCCccccc-------c------
Confidence 111233221 1222 67888987 456666666666654 4799999999999962100 0
Q ss_pred ccccccccccCccccccchhhHHHhhhccCccc--cH-HHHHhhcCCCEEEEecC----CHHHHHHHHHcCCcEEEEcCC
Q 017718 180 TLKNFQGLDLGKMDEANDSGLAAYVAGQIDRSL--SW-KWLQTITKLPILVKGVL----TAEDARIAVQAGAAGIIVSNH 252 (367)
Q Consensus 180 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~--~~-~~l~~~~~~Pv~vK~v~----~~~~a~~~~~~G~d~i~vs~~ 252 (367)
.. .. .++.+ .. .++++..++|+++|... ..+.++.+.++|+|+++++|.
T Consensus 143 --~~--------------------~~--~~~~~~~~~~~~v~~~~~~p~~vkl~~~~~~~~~~a~~~~~~~~~~~~~~n~ 198 (311)
T d1ep3a_ 143 --QA--------------------FG--TDPEVAAALVKACKAVSKVPLYVKLSPNVTDIVPIAKAVEAAGADGLTMINT 198 (311)
T ss_dssp --EE--------------------GG--GCHHHHHHHHHHHHHHCSSCEEEEECSCSSCSHHHHHHHHHTTCSEEEECCC
T ss_pred --cc--------------------cc--cCHHHHHHHHHHHHhccCCCeeeeecccccchHHHHHHHHHhhhheeEEEee
Confidence 00 00 02221 11 26788889999999973 356788999999999999885
Q ss_pred CCCC-------------CC---Ccc----chHHHHHHHHHHhcCCCcEEEecCCCCHHHHHHHHHcCCCEEEechHHHHH
Q 017718 253 GARQ-------------LD---YVP----ATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFIGRPVVYS 312 (367)
Q Consensus 253 gg~~-------------~~---~~~----~~~~~l~~i~~~~~~~~~via~GGI~~~~dv~kal~lGAd~V~ig~~~l~~ 312 (367)
.+.. .. +|+ .+++.+.++++.+ ++|||++|||+|++|+.+++.+|||+||+||+++.
T Consensus 199 ~~~~~~~~~~~~~~~~~~~~g~sG~~i~~~~l~~i~~i~~~~--~ipIig~GGI~s~~Da~~~i~~GAd~V~ig~~~~~- 275 (311)
T d1ep3a_ 199 LMGVRFDLKTRQPILANITGGLSGPAIKPVALKLIHQVAQDV--DIPIIGMGGVANAQDVLEMYMAGASAVAVGTANFA- 275 (311)
T ss_dssp EEECCBCTTTCSBSSTTSCEEEESGGGHHHHHHHHHHHHTTC--SSCEEECSSCCSHHHHHHHHHHTCSEEEECTHHHH-
T ss_pred ccccccccccccccccccCCCCCCCcccchhHHHHHHHhhhc--ceeEEEeCCcCCHHHHHHHHHcCCCEEEecHHHHc-
Confidence 3210 01 122 2456677776655 79999999999999999999999999999999864
Q ss_pred hhccChHHHHHHHHHHHHHHHHHHHHhCCCChhhhccc
Q 017718 313 LAAEGEKGVRRVLEMLREEFELAMALSGCRSLKEITRD 350 (367)
Q Consensus 313 l~~~G~~~v~~~i~~l~~el~~~m~~~G~~si~~l~~~ 350 (367)
++. ++..+.+||..+|+..|+++++|++++
T Consensus 276 ----~P~----i~~~I~~~L~~~m~~~g~~si~e~~g~ 305 (311)
T d1ep3a_ 276 ----DPF----VCPKIIDKLPELMDQYRIESLESLIQE 305 (311)
T ss_dssp ----CTT----HHHHHHHHHHHHHHHTTCSCHHHHHHH
T ss_pred ----CCh----HHHHHHHHHHHHHHHcCCCCHHHHHHH
Confidence 332 677889999999999999999999874
|
| >d2cu0a1 c.1.5.1 (A:3-96,A:207-480) Inosine monophosphate dehydrogenase (IMPDH) {Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Inosine monophosphate dehydrogenase (IMPDH) family: Inosine monophosphate dehydrogenase (IMPDH) domain: Inosine monophosphate dehydrogenase (IMPDH) species: Pyrococcus horikoshii [TaxId: 53953]
Probab=99.85 E-value=1.4e-20 Score=182.12 Aligned_cols=250 Identities=20% Similarity=0.285 Sum_probs=177.8
Q ss_pred ccccceeecccc-CCCCCCccceeEc-CeeeccceEeCcccchhccCChhhHHHHHHHHHcCCceeecCCCCCCHHHHHh
Q 017718 42 AFSRILFRPRIL-IDVSKIDMNTTVL-GFKISMPIMIAPTAMQKMAHPEGEYATARAASAAGTIMTLSSWSTSSVEEVAS 119 (367)
Q Consensus 42 ~~~~i~l~pr~l-~~~~~vd~st~i~-g~~l~~Pi~iAPm~~~~l~~~~~e~~~a~aa~~~G~~~~vs~~~~~~~e~i~~ 119 (367)
.||++.|+|..- .+..+||++++|- ..++..||+-|||-..+ +..++.+..++|...++.- ..++|+..+
T Consensus 14 tfdDVlLvP~~sti~srdVdls~~~~~~~~l~iPIiss~MDtV~------~~~mA~~la~~Gglgvlhr--~~~~e~~~~ 85 (368)
T d2cu0a1 14 TFDDVLLIPQATEVEPKDVDVSTRITPNVKLNIPILSAAMDTVT------EWEMAVAMAREGGLGVIHR--NMGIEEQVE 85 (368)
T ss_dssp CGGGEEECCCCCSSCSTTCBCCEEEETTEEESSSEEECCCTTTC------SHHHHHHHHHTTCEEEECS--SSCHHHHHH
T ss_pred CcccEEEeCCCCcCchhhceeeEEeeCCcccCCCEEeCCCCCcC------CHHHHHHHHHCCCeeEecc--cCCHHHHHH
Confidence 799999999654 3445799999996 68999999999995443 6789999999999988863 345554321
Q ss_pred h---------CC-------CceEEEEeecCCHHHHHHHHHHHHHcCCcEEEEecCCCCCCchhHHhhhhcCCCCcccccc
Q 017718 120 T---------GP-------GIRFFQLYVYKDRNVVAQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLTLKN 183 (367)
Q Consensus 120 ~---------~~-------~~~~~QLy~~~d~~~~~~~l~ra~~~G~~ai~itvd~p~~g~r~~~~~~~~~~p~~~~~~~ 183 (367)
. .+ ....+-... .++.. +.+....++|++.|+|.+-. ++.
T Consensus 86 ~v~~v~~~e~~~~~~~d~~~~~~v~~~~--~~~~~-~r~~~l~~aGvd~ivID~A~------------Gh~--------- 141 (368)
T d2cu0a1 86 QVKRVKRAEKYKNAVRDENGELLVAAAV--SPFDI-KRAIELDKAGVDVIVVDTAH------------AHN--------- 141 (368)
T ss_dssp HHHHHHTCCCCTTCCBCTTSCBCCEEEE--CTTCH-HHHHHHHHTTCSEEEEECSC------------CCC---------
T ss_pred HHHhhhhhhhccccccccCccEEEEecc--ChHHH-HHHHHHHHcCCCEEEecCcc------------cch---------
Confidence 1 11 111111111 11111 23445567999998874421 110
Q ss_pred ccccccCccccccchhhHHHhhhccCccccHHHHHhhcCCCEEEEecCCHHHHHHHHHcCCcEEEEcCCCCCC------C
Q 017718 184 FQGLDLGKMDEANDSGLAAYVAGQIDRSLSWKWLQTITKLPILVKGVLTAEDARIAVQAGAAGIIVSNHGARQ------L 257 (367)
Q Consensus 184 ~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~l~~~~~~Pv~vK~v~~~~~a~~~~~~G~d~i~vs~~gg~~------~ 257 (367)
+++. ...+++++..++||++..+.+.+.+..+ .|+|+|-|.-.+|.. .
T Consensus 142 ------------------~~~i------~~lK~ir~~~~~~vIaGNVaT~e~~~~l--~gaD~VkVGIG~Gs~CTTr~~t 195 (368)
T d2cu0a1 142 ------------------LKAI------KSMKEMRQKVDADFIVGNIANPKAVDDL--TFADAVKVGIGPGSICTTRIVA 195 (368)
T ss_dssp ------------------HHHH------HHHHHHHHTCCSEEEEEEECCHHHHTTC--TTSSEEEECSSCSTTBCHHHHT
T ss_pred ------------------hhhh------hhhhhhhhhcccceeeccccCHHHHHhh--hcCcceeecccCcccccchhhc
Confidence 0000 0245788888999999999999888654 699999996555531 3
Q ss_pred CCccchHHHHHHHHHHhcC-CCcEEEecCCCCHHHHHHHHHcCCCEEEechHHHH--------------------Hhhc-
Q 017718 258 DYVPATIMALEEVVKATQG-RIPVFLDGGVRRGTDVFKALALGASGIFIGRPVVY--------------------SLAA- 315 (367)
Q Consensus 258 ~~~~~~~~~l~~i~~~~~~-~~~via~GGI~~~~dv~kal~lGAd~V~ig~~~l~--------------------~l~~- 315 (367)
..|.|.+.++.++.+...+ .+|||+||||+++.|++|||++|||+||+|++|-- +++.
T Consensus 196 GvG~Pq~sAi~e~~~~~~~~~~~iiADGGi~~~Gdi~KAla~GAd~VMlG~~lAg~~Espg~~~~~~g~~~k~~~Gm~S~ 275 (368)
T d2cu0a1 196 GVGVPQITAVAMVADRAQEYGLYVIADGGIRYSGDIVKAIAAGADAVMLGNLLAGTKEAPGKEVIINGRKYKQYRGMGSL 275 (368)
T ss_dssp CCCCCHHHHHHHHHHHHHHHTCEEEEESCCCSHHHHHHHHHTTCSEEEESTTTTTBTTCCSCEEEETTEEEEEEECTTSH
T ss_pred ccccchHHHHHHHHHHHhccCCeeEecCCCCcCChhheeeeeccceeeccchhccccccCCceEeeCCeEcccccCcccc
Confidence 4577888888888765432 69999999999999999999999999999997621 1100
Q ss_pred ------------------------cCh-------HHHHHHHHHHHHHHHHHHHHhCCCChhhhcc
Q 017718 316 ------------------------EGE-------KGVRRVLEMLREEFELAMALSGCRSLKEITR 349 (367)
Q Consensus 316 ------------------------~G~-------~~v~~~i~~l~~el~~~m~~~G~~si~~l~~ 349 (367)
+|. ..+.+++..|...|+..|.++|+++|.||++
T Consensus 276 ~a~~~~~~~~~~~~~~~~~~~~~~EG~~~~v~~~G~~~~~l~~l~gglrs~m~y~G~~~l~e~~~ 340 (368)
T d2cu0a1 276 GAMMKGGAERYYQGGYMKTRKFVPEGVEGVVPYRGTVSEVLYQLVGGLKAGMGYVGARNIRELKE 340 (368)
T ss_dssp HHHTC----------CCCCSCSSCCBCEEEEECCBCHHHHHHHHHHHHHHHHHHTTCSBHHHHHH
T ss_pred cccccCCcccccccccccccccCCCceEEeeCCCCCHHHHHHHHHHHHHHHHHhcCcccHHHHhh
Confidence 111 1378899999999999999999999999974
|
| >d1d3ga_ c.1.4.1 (A:) Dihydroorotate dehydrogenase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: FMN-linked oxidoreductases family: FMN-linked oxidoreductases domain: Dihydroorotate dehydrogenase species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.84 E-value=1.2e-19 Score=175.88 Aligned_cols=272 Identities=19% Similarity=0.179 Sum_probs=168.8
Q ss_pred hhhHHHhHhccccceeeccccCCCCCCccceeEcCeeeccceEeCcccchhccCChhhHHHHHHHHHcCCceee-cCCCC
Q 017718 33 QWTLQENRNAFSRILFRPRILIDVSKIDMNTTVLGFKISMPIMIAPTAMQKMAHPEGEYATARAASAAGTIMTL-SSWST 111 (367)
Q Consensus 33 ~~t~~~n~~~~~~i~l~pr~l~~~~~vd~st~i~g~~l~~Pi~iAPm~~~~l~~~~~e~~~a~aa~~~G~~~~v-s~~~~ 111 (367)
|.+++-....+ ++.+.|.. +.....+++|+|+|.++++||++|+ |.. ++....+.+.++|..+++ .|.+.
T Consensus 24 e~ah~~~~~~~-~~~~~~~~-~~~~~~~L~v~~~Gl~~~nPi~lAs-G~~------~~~~~i~~~~~~G~G~vv~kTit~ 94 (367)
T d1d3ga_ 24 ESAHRLAVRFT-SLGLLPRA-RFQDSDMLEVRVLGHKFRNPVGIAA-GFD------KHGEAVDGLYKMGFGFVEIGSVTP 94 (367)
T ss_dssp HHHHHHHHHHH-HTTCCC----CCCCGGGCEEETTEEESSSEEECT-TSS------TTSSSHHHHHHHTCSEEEEEEECS
T ss_pred HHHHHHHHHHH-HhcCcccc-ccCCCCCCceEECCEecCCCcEeCc-CCC------CCHHHHHHHhhcCCcEEeeccccc
Confidence 34443333333 35566653 3445668999999999999999987 322 233456778888988775 33221
Q ss_pred C----------------------------CHHHHHh-------------hCCCceEEEEeecC---CHHHHHHHHHHHHH
Q 017718 112 S----------------------------SVEEVAS-------------TGPGIRFFQLYVYK---DRNVVAQLVRRAER 147 (367)
Q Consensus 112 ~----------------------------~~e~i~~-------------~~~~~~~~QLy~~~---d~~~~~~~l~ra~~ 147 (367)
. ..+.+.+ ...-|..+.+.... +.........+..+
T Consensus 95 ~~~~gn~~pr~~~~~~~~~~~n~~g~~~~g~~~~~~~~~~~~~~~~~~~~~~~pv~vsi~~~~~~~~~~~~~~~~~~~~~ 174 (367)
T d1d3ga_ 95 KPQEGNPRPRVFRLPEDQAVINRYGFNSHGLSVVEHRLRARQQKQAKLTEDGLPLGVNLGKNKTSVDAAEDYAEGVRVLG 174 (367)
T ss_dssp SCBCCSCSCCEEEEGGGTEEEECCCCCBCCHHHHHHHHHTTHHHHHHHHHTTCCEEEEECCCTTCSCHHHHHHHHHHHHG
T ss_pred cccccCCchhhhhhccccccccccCcCCcchHHHHHHHHHHhhhcccccccCceEEEEeccccccHHHHHHHHHHHHHhh
Confidence 1 1111110 00013444443221 12222334445556
Q ss_pred cCCcEEEEecCCCCCCchhHHhhhhcCCCCccccccccccccCccccccchhhHHHhhhccCccccH-HHHHhhcCCCEE
Q 017718 148 AGFKAIALTVDTPRLGRREADIKNRFTLPPFLTLKNFQGLDLGKMDEANDSGLAAYVAGQIDRSLSW-KWLQTITKLPIL 226 (367)
Q Consensus 148 ~G~~ai~itvd~p~~g~r~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~-~~l~~~~~~Pv~ 226 (367)
.+++++.+|+-||....- .... ......... ...... .+++...++|++
T Consensus 175 ~~ad~lelNiScPn~~~~-------------------~~~~-------~~~~~~~~~----~~~~~~~~~~~~~~~~Pv~ 224 (367)
T d1d3ga_ 175 PLADYLVVNVSSPNTAGL-------------------RSLQ-------GKAELRRLL----TKVLQERDGLRRVHRPAVL 224 (367)
T ss_dssp GGCSEEEEESCCTTSTTC------------------------------CHHHHHHHH----HHHHHHHHTSCGGGCCEEE
T ss_pred hccccccccccccccccc-------------------cccc-------ccchhhhHH----HHHHHhhhhcccccCCccc
Confidence 788889999888863100 0000 000000000 000011 123334578999
Q ss_pred EEecCC--H----HHHHHHHHcCCcEEEEcCCCC-CC---------CCC---c----cchHHHHHHHHHHhcCCCcEEEe
Q 017718 227 VKGVLT--A----EDARIAVQAGAAGIIVSNHGA-RQ---------LDY---V----PATIMALEEVVKATQGRIPVFLD 283 (367)
Q Consensus 227 vK~v~~--~----~~a~~~~~~G~d~i~vs~~gg-~~---------~~~---~----~~~~~~l~~i~~~~~~~~~via~ 283 (367)
+|...+ . +.++.+.++|+++|++.|.-. .. ..+ | +.....+..+++..+.++|||+.
T Consensus 225 vKlsP~~~~~~i~~~a~~~~~~g~~gi~~~nt~~~~~~~~~~~~~~~~gg~sG~~~~~i~l~~v~~v~~~~~~~ipIig~ 304 (367)
T d1d3ga_ 225 VKIAPDLTSQDKEDIASVVKELGIDGLIVTNTTVSRPAGLQGALRSETGGLSGKPLRDLSTQTIREMYALTQGRVPIIGV 304 (367)
T ss_dssp EEECSCCCHHHHHHHHHHHHHHTCCEEEECCCBSCCCTTCCCTTTTSSSEEEEGGGHHHHHHHHHHHHHHTTTCSCEEEE
T ss_pred cccCcccchhhhhhhHHHHHhhhhheeecccccccccccccccccccccccccccchhhhHHHHHHHHHHhCCCccEEEE
Confidence 999853 3 237889999999999988521 10 011 2 22556777887777668999999
Q ss_pred cCCCCHHHHHHHHHcCCCEEEechHHHHHhhccChHHHHHHHHHHHHHHHHHHHHhCCCChhhhcccc
Q 017718 284 GGVRRGTDVFKALALGASGIFIGRPVVYSLAAEGEKGVRRVLEMLREEFELAMALSGCRSLKEITRDH 351 (367)
Q Consensus 284 GGI~~~~dv~kal~lGAd~V~ig~~~l~~l~~~G~~~v~~~i~~l~~el~~~m~~~G~~si~~l~~~~ 351 (367)
|||.+++|+++.|.+|||+|||||.++| .|+. ++..+.+||+.+|+..|++|++|+++..
T Consensus 305 GGI~s~~Da~e~i~aGAs~VQi~Ta~~~----~Gp~----ii~~I~~~L~~~l~~~G~~si~dl~G~a 364 (367)
T d1d3ga_ 305 GGVSSGQDALEKIRAGASLVQLYTALTF----WGPP----VVGKVKRELEALLKEQGFGGVTDAIGAD 364 (367)
T ss_dssp SSCCSHHHHHHHHHHTCSEEEESHHHHH----HCTH----HHHHHHHHHHHHHHHTTCSSHHHHTTGG
T ss_pred CCCCCHHHHHHHHHcCCCHHHhhHHHHh----cCcH----HHHHHHHHHHHHHHHcCCCCHHHhcChh
Confidence 9999999999999999999999999887 3775 7889999999999999999999999853
|
| >d1tv5a1 c.1.4.1 (A:158-566) Dihydroorotate dehydrogenase {Plasmodium falciparum [TaxId: 5833]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: FMN-linked oxidoreductases family: FMN-linked oxidoreductases domain: Dihydroorotate dehydrogenase species: Plasmodium falciparum [TaxId: 5833]
Probab=99.82 E-value=8e-19 Score=172.28 Aligned_cols=122 Identities=23% Similarity=0.271 Sum_probs=100.8
Q ss_pred cCCCEEEEecCC------HHHHHHHHHcCCcEEEEcCCC-CCC-------CCCcc-------chHHHHHHHHHHhcCCCc
Q 017718 221 TKLPILVKGVLT------AEDARIAVQAGAAGIIVSNHG-ARQ-------LDYVP-------ATIMALEEVVKATQGRIP 279 (367)
Q Consensus 221 ~~~Pv~vK~v~~------~~~a~~~~~~G~d~i~vs~~g-g~~-------~~~~~-------~~~~~l~~i~~~~~~~~~ 279 (367)
...||++|+..+ .+.+..+.++|+|+|++.|.. ++. ..+|. .+...+.++++.+++++|
T Consensus 265 ~~ppi~vKlsPd~~~~~i~~i~~~~~~~g~dgii~~Nt~~~~~~~~~~~~~~GGlSG~~l~~~al~~v~~v~~~~~~~ip 344 (409)
T d1tv5a1 265 KKPLVFVKLAPDLNQEQKKEIADVLLETNIDGMIISNTTTQINDIKSFENKKGGVSGAKLKDISTKFICEMYNYTNKQIP 344 (409)
T ss_dssp SCCEEEEEECSCCCHHHHHHHHHHHHHTTCSEEEECCCBSCCCCCGGGTTCCSEEEEHHHHHHHHHHHHHHHHHTTTCSC
T ss_pred cCCceEEEeCCCCCchhhHHHHHHHHhccccceecccccccccccccccccCCcccchhHHHHHHHHHHHHHHHcCCCce
Confidence 346899999863 244788999999999999852 211 12332 256678888888877899
Q ss_pred EEEecCCCCHHHHHHHHHcCCCEEEechHHHHHhhccChHHHHHHHHHHHHHHHHHHHHhCCCChhhhccc
Q 017718 280 VFLDGGVRRGTDVFKALALGASGIFIGRPVVYSLAAEGEKGVRRVLEMLREEFELAMALSGCRSLKEITRD 350 (367)
Q Consensus 280 via~GGI~~~~dv~kal~lGAd~V~ig~~~l~~l~~~G~~~v~~~i~~l~~el~~~m~~~G~~si~~l~~~ 350 (367)
||++|||.|++|+++.|.+||++|||||.++| +|+. +++.+.+||..+|+..|+++++|+++.
T Consensus 345 IIGvGGI~s~~Da~e~i~AGAs~VQv~T~li~----~Gp~----~v~~I~~~L~~~l~~~g~~~i~e~iG~ 407 (409)
T d1tv5a1 345 IIASGGIFSGLDALEKIEAGASVCQLYSCLVF----NGMK----SAVQIKRELNHLLYQRGYYNLKEAIGR 407 (409)
T ss_dssp EEEESSCCSHHHHHHHHHTTEEEEEESHHHHH----HGGG----HHHHHHHHHHHHHHHHTCSSSGGGTTT
T ss_pred EEEECCCCCHHHHHHHHHcCCCHHhhhhHHHh----cChH----HHHHHHHHHHHHHHHcCCCCHHHhcCC
Confidence 99999999999999999999999999999988 4765 788999999999999999999999875
|
| >d1ea0a2 c.1.4.1 (A:423-1193) Alpha subunit of glutamate synthase, central and FMN domains {Azospirillum brasilense [TaxId: 192]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: FMN-linked oxidoreductases family: FMN-linked oxidoreductases domain: Alpha subunit of glutamate synthase, central and FMN domains species: Azospirillum brasilense [TaxId: 192]
Probab=99.75 E-value=8e-17 Score=165.66 Aligned_cols=261 Identities=20% Similarity=0.181 Sum_probs=175.1
Q ss_pred eccceEeCcccchhccCChhhHHHHHHHHHcCCceeecCCCCCCHHHHHhhC----CCceEEEEeecCCHHHHHHHHHHH
Q 017718 70 ISMPIMIAPTAMQKMAHPEGEYATARAASAAGTIMTLSSWSTSSVEEVASTG----PGIRFFQLYVYKDRNVVAQLVRRA 145 (367)
Q Consensus 70 l~~Pi~iAPm~~~~l~~~~~e~~~a~aa~~~G~~~~vs~~~~~~~e~i~~~~----~~~~~~QLy~~~d~~~~~~~l~ra 145 (367)
+-.||.++.|+++.+. ++.-.+++++|.+.|+....|+.. .+.+...... .....+|+.. ....+..+.+
T Consensus 427 I~k~f~isaMSfGALS-~~A~~aLa~ga~~~g~~~ntGEGG-~~~~~~~~~~~~~~~~~~i~q~as-grfG~~~~~l--- 500 (771)
T d1ea0a2 427 IRKRFITPGMSMGALS-PEAHGTLNVAMNRIGAKSDSGEGG-EDPARFRPDKNGDNWNSAIKQVAS-GRFGVTAEYL--- 500 (771)
T ss_dssp HHTTEEEEECCBTTBC-HHHHHHHHHHHHHTTCEEECCTTC-CCGGGSSBCTTSCBCCCSEEEECS-SCTTCCHHHH---
T ss_pred hheeeccccccccccC-HHHHHHHHHHHHhcCCeeecCCCC-CChhhccccCCCcccccccceecC-CcCCcCHHHh---
Confidence 4469999999998764 567789999999999987776654 3434332111 1346788753 3333333333
Q ss_pred HHcCCcEEEEecCCCCCCchhHHhhhhcCCCC-ccccccccccccCccccccch-hhHHHhhhccCccc-cHH-------
Q 017718 146 ERAGFKAIALTVDTPRLGRREADIKNRFTLPP-FLTLKNFQGLDLGKMDEANDS-GLAAYVAGQIDRSL-SWK------- 215 (367)
Q Consensus 146 ~~~G~~ai~itvd~p~~g~r~~~~~~~~~~p~-~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~d~~~-~~~------- 215 (367)
..+++|-|-+.--.. --.|..+|. |++.. +++.++. .....+++..++++ +.+
T Consensus 501 --~~~~~ieIK~~QGAK------pG~GG~Lpg~KVt~~---------IA~~R~~~~G~~~iSP~~h~di~siedL~~~I~ 563 (771)
T d1ea0a2 501 --NQCRELEIKVAQGAK------PGEGGQLPGFKVTEM---------IARLRHSTPGVMLISPPPHHDIYSIEDLAQLIY 563 (771)
T ss_dssp --TSCSEEEEECCCTTS------TTTCCEECGGGCCHH---------HHHHHTCCTTCCEECCSSCTTCSSHHHHHHHHH
T ss_pred --cccceeEEeeecccc------cccccccccccCCHH---------HHHhcCCCCCCCccCCCCCCCCCCHHHHHHHHH
Confidence 456777776652221 001222332 22200 0000000 00001122223333 221
Q ss_pred HHHhhc-CCCEEEEecCC--H-HHHHHHHHcCCcEEEEcCC-CCCCC-------CCccchHHHHHHHHHHh-----cCCC
Q 017718 216 WLQTIT-KLPILVKGVLT--A-EDARIAVQAGAAGIIVSNH-GARQL-------DYVPATIMALEEVVKAT-----QGRI 278 (367)
Q Consensus 216 ~l~~~~-~~Pv~vK~v~~--~-~~a~~~~~~G~d~i~vs~~-gg~~~-------~~~~~~~~~l~~i~~~~-----~~~~ 278 (367)
.||+.. +.||.||.+.. . ..+..+.++|+|+|+|+|+ ||+.- +.|.|....|+++.+.+ ++++
T Consensus 564 ~Lr~~~~~~pv~vKl~~~~~~~~i~~~v~ka~~D~I~IdG~eGGTGAap~~~~d~~GlP~~~~l~~~~~~L~~~glr~~V 643 (771)
T d1ea0a2 564 DLKQINPDAKVTVKLVSRSGIGTIAAGVAKANADIILISGNSGGTGASPQTSIKFAGLPWEMGLSEVHQVLTLNRLRHRV 643 (771)
T ss_dssp HHHHHCTTCEEEEEEECCTTHHHHHHHHHHTTCSEEEEECTTCCCSSEETTHHHHSCCCHHHHHHHHHHHHHTTTCTTTS
T ss_pred HHHhcCCCCCEEEEECCcCcHHHHHHHHHhcCCCEEEEecCCCccccccHHHhhcCCcCHHHHHHHHHHHHHHcCCCCce
Confidence 677766 78999999843 3 4567778999999999997 45431 35778888888888775 4689
Q ss_pred cEEEecCCCCHHHHHHHHHcCCCEEEechHHHHHhhcc---------------------------ChHHHHHHHHHHHHH
Q 017718 279 PVFLDGGVRRGTDVFKALALGASGIFIGRPVVYSLAAE---------------------------GEKGVRRVLEMLREE 331 (367)
Q Consensus 279 ~via~GGI~~~~dv~kal~lGAd~V~ig~~~l~~l~~~---------------------------G~~~v~~~i~~l~~e 331 (367)
.++++||++++.|++|+++||||+|.+||.+|++++|. .++.|.+++..+.+|
T Consensus 644 ~l~a~Ggl~t~~Dv~ka~aLGAD~v~~gt~~m~alGCi~~r~Ch~~~CP~GIaTqd~~lr~~~~~~~~~v~n~~~~~~~e 723 (771)
T d1ea0a2 644 RLRTDGGLKTGRDIVIAAMLGAEEFGIGTASLIAMGCIMVRQCHSNTCPVGVCVQDDKLRQKFVGTPEKVVNLFTFLAEE 723 (771)
T ss_dssp EEEEESSCCSHHHHHHHHHTTCSEEECCHHHHHHHTCCCCCCTTTTCCTTSSSCCCTTGGGSCCCCHHHHHHHHHHHHHH
T ss_pred EEEEeCCCCCHHHHHHHHHhCCCchHHhHHHHHHhhCHHhhhccCCCCCCeeecCCHHHHhhccCcHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999998862 246799999999999
Q ss_pred HHHHHHHhCCCChhhhc-cccee
Q 017718 332 FELAMALSGCRSLKEIT-RDHIV 353 (367)
Q Consensus 332 l~~~m~~~G~~si~~l~-~~~l~ 353 (367)
++.+|..+|.++++|+. ++++.
T Consensus 724 ~~~~~~~~G~~s~~~lvG~~dll 746 (771)
T d1ea0a2 724 VREILAGLGFRSLNEVIGRTDLL 746 (771)
T ss_dssp HHHHHHHHTCSCSGGGTTCGGGE
T ss_pred HHHHHHHHcCCCHHHhccchhhh
Confidence 99999999999999983 44443
|
| >d2b4ga1 c.1.4.1 (A:2-313) Dihydroorotate dehydrogenase {Trypanosoma brucei [TaxId: 5691]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: FMN-linked oxidoreductases family: FMN-linked oxidoreductases domain: Dihydroorotate dehydrogenase species: Trypanosoma brucei [TaxId: 5691]
Probab=99.75 E-value=1.8e-17 Score=156.81 Aligned_cols=238 Identities=18% Similarity=0.171 Sum_probs=148.6
Q ss_pred ccceeEcCeeeccceEeCcccchhccCChhhHHHHHHHHHcCCceeec-CCCC--------------------------C
Q 017718 60 DMNTTVLGFKISMPIMIAPTAMQKMAHPEGEYATARAASAAGTIMTLS-SWST--------------------------S 112 (367)
Q Consensus 60 d~st~i~g~~l~~Pi~iAPm~~~~l~~~~~e~~~a~aa~~~G~~~~vs-~~~~--------------------------~ 112 (367)
+++|+|+|++|++||++|+-... .+....+.+.+.|..+++. |... .
T Consensus 1 sL~v~~~Gl~l~nPi~~aaG~~~------~~~~~~~~~~~~g~g~vv~ktit~~p~~gnp~Pr~~~~~~~~~N~~G~~n~ 74 (312)
T d2b4ga1 1 SLKVNILGHEFSNPFMNAAGVLC------TTEEDLRRMTESESGSLIGKSCTLAPRTGNPEPRYFGLPLGSINSMGLPNL 74 (312)
T ss_dssp CCCEEETTEEESSSEEECTTSSC------SSHHHHHHHHHSSCSCEEEEEECSSCBCCSCSCCEEEETTEEEECCCCCBS
T ss_pred CCcEEECCEECCCCcEeCcCCCC------CCHHHHHHHHHcCCCEEEeCcccccCCCCCCCCeEEecCchheeccccCcc
Confidence 47899999999999999862121 2456788889999887753 3211 1
Q ss_pred CHHH----HHhhC---CCceEEEEeecCCHHHHHHHHHH---HHHcCCcEEEEecCCCCCCchhHHhhhhcCCCCccccc
Q 017718 113 SVEE----VASTG---PGIRFFQLYVYKDRNVVAQLVRR---AERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLTLK 182 (367)
Q Consensus 113 ~~e~----i~~~~---~~~~~~QLy~~~d~~~~~~~l~r---a~~~G~~ai~itvd~p~~g~r~~~~~~~~~~p~~~~~~ 182 (367)
.++. +.+.. ..+.+.-+.. ...+...+.+++ ..+.+++++.+|+.||.... . +
T Consensus 75 G~~~~~~~l~~~~~~~~~pii~si~g-~~~~~~~~~~~~~~~~~~~~ad~iElNiScPn~~~-------------~---~ 137 (312)
T d2b4ga1 75 GVDFYLSYAAQTHDYSRKPLFLSMSG-LSVEESVEMVKKLVPITKEKGTILELNLSCPNVPG-------------K---P 137 (312)
T ss_dssp CHHHHHHHHHHTCCTTTCCEEEEECC-SSHHHHHHHHHHHHHHHHHHCCEEEEECCCCCSTT-------------C---C
T ss_pred hHHHHHHHHHHhhhccccceeccccc-cccccHHHHHHHHHHhhhhcccceeeccccCCcCc-------------c---h
Confidence 1221 11111 1344444432 222222222322 23456677777777775210 0 0
Q ss_pred cccccccCccccccchhhHHHhhhccCccc--c-HHHHHhhcCCCEEEEecCC--HHH----HHHHHHc-CCcEEEEcCC
Q 017718 183 NFQGLDLGKMDEANDSGLAAYVAGQIDRSL--S-WKWLQTITKLPILVKGVLT--AED----ARIAVQA-GAAGIIVSNH 252 (367)
Q Consensus 183 ~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~--~-~~~l~~~~~~Pv~vK~v~~--~~~----a~~~~~~-G~d~i~vs~~ 252 (367)
. +.. +++. . .+++++.+++|+++|.... ... +..+.++ +++++...|.
T Consensus 138 ~--------------------~~~--~~~~~~~i~~~v~~~~~~pi~vKl~p~~~~~~~~~~~~~~~~~~~~~~i~~~nt 195 (312)
T d2b4ga1 138 Q--------------------VGY--DFDTTRTYLQKVSEAYGLPFGVKMPPYFDIAHFDMAAAVLNDFPLVKFITCVNS 195 (312)
T ss_dssp C--------------------GGG--CHHHHHHHHHHHHHHHCSCEEEEECCCCCHHHHHHHHHHHTTCTTEEEEEECCC
T ss_pred h--------------------hhc--cHHHHHHHHHHhhccccccceeccccccchhHHHHHHHHHHhhhhhhhhhhccc
Confidence 0 000 1111 1 2378888899999999853 221 2233333 3444544442
Q ss_pred CCC---------C--C-----CC---ccc----hHHHHHHHHHHhcCCCcEEEecCCCCHHHHHHHHHcCCCEEEechHH
Q 017718 253 GAR---------Q--L-----DY---VPA----TIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFIGRPV 309 (367)
Q Consensus 253 gg~---------~--~-----~~---~~~----~~~~l~~i~~~~~~~~~via~GGI~~~~dv~kal~lGAd~V~ig~~~ 309 (367)
-+. + . .+ |++ +...+.++++.++ ..+||+.|||++++|++++|.+||++||++|.+
T Consensus 196 ~~~~~~~~~~~~~~~~~~~~~~GGlSG~~l~~~al~~v~~~~~~~~-~~~Iig~GGI~s~~Da~e~i~aGAs~Vqv~Tal 274 (312)
T d2b4ga1 196 IGNGLVIDPANETVVIKPKQGFGGLGGKYVLPTALANVNAFFRRCP-DKLVFGCGGVYSGEEAFLHILAGASMVQVGTAL 274 (312)
T ss_dssp EEEEECEETTTTEESCCGGGGEEEEEEGGGHHHHHHHHHHHHHHCT-TSEEEEESSCCSHHHHHHHHHHTEEEEEESHHH
T ss_pred ccccccccccCCCccccccccccCcccccccchhhHHHHHHHHHcC-CCceeecCCcCCHHHHHHHHHcCCChheeehhh
Confidence 111 0 0 12 222 4566777776664 567999999999999999999999999999999
Q ss_pred HHHhhccChHHHHHHHHHHHHHHHHHHHHhCCCChhhhcccc
Q 017718 310 VYSLAAEGEKGVRRVLEMLREEFELAMALSGCRSLKEITRDH 351 (367)
Q Consensus 310 l~~l~~~G~~~v~~~i~~l~~el~~~m~~~G~~si~~l~~~~ 351 (367)
+| +|+. +++.+.+||+.+|+..|++|++|+++..
T Consensus 275 ~~----~Gp~----~i~~i~~~L~~~l~~~G~~si~e~~G~~ 308 (312)
T d2b4ga1 275 HD----EGPI----IFARLNKELQEIMTNKGYKTLDEFRGRV 308 (312)
T ss_dssp HH----HCTT----HHHHHHHHHHHHHHHHTCCSGGGTTTCC
T ss_pred Hh----cCcH----HHHHHHHHHHHHHHHcCCCCHHHHcCee
Confidence 88 4774 7889999999999999999999999853
|
| >d1ofda2 c.1.4.1 (A:431-1239) Alpha subunit of glutamate synthase, central and FMN domains {Synechocystis sp. [TaxId: 1143]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: FMN-linked oxidoreductases family: FMN-linked oxidoreductases domain: Alpha subunit of glutamate synthase, central and FMN domains species: Synechocystis sp. [TaxId: 1143]
Probab=99.69 E-value=6.2e-16 Score=159.48 Aligned_cols=260 Identities=19% Similarity=0.155 Sum_probs=168.9
Q ss_pred eccceEeCcccchhccCChhhHHHHHHHHHcCCceeecCCCCCCHHHHHh--------------------hCC--CceEE
Q 017718 70 ISMPIMIAPTAMQKMAHPEGEYATARAASAAGTIMTLSSWSTSSVEEVAS--------------------TGP--GIRFF 127 (367)
Q Consensus 70 l~~Pi~iAPm~~~~l~~~~~e~~~a~aa~~~G~~~~vs~~~~~~~e~i~~--------------------~~~--~~~~~ 127 (367)
+-.||.++.|+++.+. ++.-.+++++|.+.|.....|+..- +.+.... ... .....
T Consensus 436 I~k~f~~~aMS~GslS-~~a~~ala~aa~~~G~~~ntGEGG~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~s~i~ 513 (809)
T d1ofda2 436 IVKRFCTGGMSLGALS-REAHETLAIAMNRLGAKSNSGEGGE-DVVRYLTLDDVDSEGNSPTLPHLHGLQNGDTANSAIK 513 (809)
T ss_dssp HHTTEECCCBCTTTSC-HHHHHHHHHHHHHHTCBCEECTTCC-CGGGGSCCCCCCTTSCCTTSTTCCSCCTTCCCCCSEE
T ss_pred hhhhhccccccccccc-HHHHHHHHHHHHHhCceecCCCCCC-CceeeeccCccccccCcccccccccccCCCCCcchhH
Confidence 4569999999998764 5677899999999999887776542 2222110 000 22356
Q ss_pred EEeecCCHHHHHHHHHHHHHcCCcEEEEecCCCCCCchhHHhhhhcCCCC-ccccccccccccCccccccchh-hHHHhh
Q 017718 128 QLYVYKDRNVVAQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFTLPP-FLTLKNFQGLDLGKMDEANDSG-LAAYVA 205 (367)
Q Consensus 128 QLy~~~d~~~~~~~l~ra~~~G~~ai~itvd~p~~g~r~~~~~~~~~~p~-~~~~~~~~~~~~~~~~~~~~~~-~~~~~~ 205 (367)
|+- ......+.+.+..+ +.|-|-+.--.. --.|..+|. |++.. +++.+... ....++
T Consensus 514 q~a-sgrfGv~~~~l~~~-----~~ieIK~~QGAK------PG~GG~Lpg~KVt~~---------IA~~R~~~~G~~liS 572 (809)
T d1ofda2 514 QIA-SGRFGVTPEYLMSG-----KQLEIKMAQGAK------PGEGGQLPGKKVSEY---------IAMLRRSKPGVTLIS 572 (809)
T ss_dssp EEC-TTCTTCCHHHHHHC-----SEEEEECCCTTS------TTSCCEECGGGCCHH---------HHHHHTSCTTCCEEC
T ss_pred hhh-hcccCCChhhhccc-----ceEEEEEecccc------cccccccchhhcCHH---------HHhhcCCCCCCCCCC
Confidence 764 33444444455443 455554432110 001112331 22100 00000000 001122
Q ss_pred hccCccc-cHH-------HHHhhc-CCCEEEEecCC--H-HHHHHHHHcCCcEEEEcCC-CCCCC-------CCccchHH
Q 017718 206 GQIDRSL-SWK-------WLQTIT-KLPILVKGVLT--A-EDARIAVQAGAAGIIVSNH-GARQL-------DYVPATIM 265 (367)
Q Consensus 206 ~~~d~~~-~~~-------~l~~~~-~~Pv~vK~v~~--~-~~a~~~~~~G~d~i~vs~~-gg~~~-------~~~~~~~~ 265 (367)
+..++++ +.+ .||+.. +.||.||.+.. . ..+....++|+|.|+++|+ ||+.- +.|.|...
T Consensus 573 P~~h~diysiedL~q~I~~Lr~~~~~~pv~vKl~~~~g~~~ia~~vaka~aD~I~IdG~eGGTGAap~~~~~~~GlP~~~ 652 (809)
T d1ofda2 573 PPPHHDIYSIEDLAQLIYDLHQINPEAQVSVKLVAEIGIGTIAAGVAKANADIIQISGHDGGTGASPLSSIKHAGSPWEL 652 (809)
T ss_dssp CSSCTTCSSHHHHHHHHHHHHHHCTTSEEEEEEECSTTHHHHHHHHHHTTCSEEEEECTTCCCSSEEHHHHHHBCCCHHH
T ss_pred CCCCCCCCCHHHHHHHHHHHHHhCCCCceEEEEeeecChHHHHHHHhhcCCCEEEEeCCCCccccccHHHHhcCCccHHH
Confidence 2223333 222 677766 67999999843 3 3456667899999999997 55531 35677777
Q ss_pred HHHHHHHHh-----cCCCcEEEecCCCCHHHHHHHHHcCCCEEEechHHHHHhhcc------------------------
Q 017718 266 ALEEVVKAT-----QGRIPVFLDGGVRRGTDVFKALALGASGIFIGRPVVYSLAAE------------------------ 316 (367)
Q Consensus 266 ~l~~i~~~~-----~~~~~via~GGI~~~~dv~kal~lGAd~V~ig~~~l~~l~~~------------------------ 316 (367)
.|.++.+.+ ++++.++++||++||.|++|+++||||+|.+||.+|++++|-
T Consensus 653 gl~~a~~~L~~~glR~~V~Lia~Ggl~t~~Dv~ka~aLGAD~v~~gt~~l~alGCi~~r~Ch~n~CP~GIaTqd~~l~~~ 732 (809)
T d1ofda2 653 GVTEVHRVLMENQLRDRVLLRADGGLKTGWDVVMAALMGAEEYGFGSIAMIAEGCIMARVCHTNNCPVGVATQQERLRQR 732 (809)
T ss_dssp HHHHHHHHHHHTTCGGGCEEEEESSCCSHHHHHHHHHTTCSEEECSHHHHHHTTCCCCCCGGGTCCTTSSSCCCHHHHTT
T ss_pred HHHHHHHHHHHcCCCCceEEEEeCCCCCHHHHHHHHHhCCCchhHhHHHHHHHHCHHhHhhCCCCCCCcccCCCHHHHhh
Confidence 888887765 458999999999999999999999999999999999998752
Q ss_pred ---ChHHHHHHHHHHHHHHHHHHHHhCCCChhhhc-ccce
Q 017718 317 ---GEKGVRRVLEMLREEFELAMALSGCRSLKEIT-RDHI 352 (367)
Q Consensus 317 ---G~~~v~~~i~~l~~el~~~m~~~G~~si~~l~-~~~l 352 (367)
.++.|.+++..+.+|++.+|..+|.++++|+. +.++
T Consensus 733 ~~~~~~~v~n~~~~~~~e~~~~~a~~G~~s~~elvGr~dl 772 (809)
T d1ofda2 733 FKGVPGQVVNFFYFIAEEVRSLLAHLGYRSLDDIIGRTDL 772 (809)
T ss_dssp CCCCHHHHHHHHHHHHHHHHHHHHHHTCSCGGGTTTCGGG
T ss_pred CcCcHHHHHHHHHHHHHHHHHHHHHHcCCCHHHhcChHhh
Confidence 23569999999999999999999999999984 4343
|
| >d1f76a_ c.1.4.1 (A:) Dihydroorotate dehydrogenase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: FMN-linked oxidoreductases family: FMN-linked oxidoreductases domain: Dihydroorotate dehydrogenase species: Escherichia coli [TaxId: 562]
Probab=99.65 E-value=8.6e-15 Score=139.56 Aligned_cols=108 Identities=19% Similarity=0.224 Sum_probs=81.0
Q ss_pred HHHhhcCCCEEEEecCCH------HHHHHHHHcCCcEEEEcCCC-CCC---------CCCc---c----chHHHHHHHHH
Q 017718 216 WLQTITKLPILVKGVLTA------EDARIAVQAGAAGIIVSNHG-ARQ---------LDYV---P----ATIMALEEVVK 272 (367)
Q Consensus 216 ~l~~~~~~Pv~vK~v~~~------~~a~~~~~~G~d~i~vs~~g-g~~---------~~~~---~----~~~~~l~~i~~ 272 (367)
+.+...++||++|...+. +.+..+.+.|+++++..|.- ++. ..+| + .+...+.++++
T Consensus 205 ~~~~~~~~Pv~vKlsp~~~~~~i~~~a~~~~~~g~~gv~~int~~~~~~~~~~~~~~~~GGlSG~~i~~~al~~v~~v~~ 284 (336)
T d1f76a_ 205 QAMHHKYVPIAVKIAPDLSEEELIQVADSLVRHNIDGVIATNTTLDRSLVQGMKNCDQTGGLSGRPLQLKSTEIIRRLSL 284 (336)
T ss_dssp HHHHTSCCCEEEECCSCCCHHHHHHHHHHHHHTTCSEEEECCCBCCCTTSTTSTTTTCSSEEEEGGGHHHHHHHHHHHHH
T ss_pred hhhccCcCCcccccchhhhhhhhhhhHHHHHhcCccchhhhhhhhcccccccccccccccccccchhHHHHHHHHHHHHH
Confidence 444556899999998532 33677888999999998742 111 1122 2 24566778877
Q ss_pred HhcCCCcEEEecCCCCHHHHHHHHHcCCCEEEechHHHHHhhccChHHHHHHHHHHHHH
Q 017718 273 ATQGRIPVFLDGGVRRGTDVFKALALGASGIFIGRPVVYSLAAEGEKGVRRVLEMLREE 331 (367)
Q Consensus 273 ~~~~~~~via~GGI~~~~dv~kal~lGAd~V~ig~~~l~~l~~~G~~~v~~~i~~l~~e 331 (367)
.++.++|||+.|||.|++|+.+.|.+||++|||||.++| +|+. +++.+.+|
T Consensus 285 ~~~~~ipIIG~GGI~s~~Da~e~i~aGAsaVQv~Tal~~----~Gp~----ii~~I~~e 335 (336)
T d1f76a_ 285 ELNGRLPIIGVGGIDSVIAAREKIAAGASLVQIYSGFIF----KGPP----LIKEIVTH 335 (336)
T ss_dssp HHTTSSCEEEESSCCSHHHHHHHHHHTCSEEEESHHHHH----HCHH----HHHHHHHH
T ss_pred HcCCCCeEEEECCCCCHHHHHHHHHcCCcHHHHHHHHHh----cChH----HHHHHHhh
Confidence 777789999999999999999999999999999999887 4775 45555555
|
| >d1y0ea_ c.1.2.5 (A:) Putative N-acetylmannosamine-6-phosphate 2-epimerase NanE {Staphylococcus aureus [TaxId: 1280]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Ribulose-phoshate binding barrel family: NanE-like domain: Putative N-acetylmannosamine-6-phosphate 2-epimerase NanE species: Staphylococcus aureus [TaxId: 1280]
Probab=99.37 E-value=8.3e-12 Score=110.59 Aligned_cols=93 Identities=18% Similarity=0.241 Sum_probs=78.9
Q ss_pred HHHhhcCCCEEEEecCCHHHHHHHHHcCCcEEEEcCCCCCCCCC----ccchHHHHHHHHHHhcCCCcEEEecCCCCHHH
Q 017718 216 WLQTITKLPILVKGVLTAEDARIAVQAGAAGIIVSNHGARQLDY----VPATIMALEEVVKATQGRIPVFLDGGVRRGTD 291 (367)
Q Consensus 216 ~l~~~~~~Pv~vK~v~~~~~a~~~~~~G~d~i~vs~~gg~~~~~----~~~~~~~l~~i~~~~~~~~~via~GGI~~~~d 291 (367)
++++....+++...+.+.+++..+.+.|+|+|.+.+++++.... ....++.+.++++.+ ++|||++|||+|++|
T Consensus 112 ~~~~~~~~~~v~~~~~t~~~a~~~~~~g~d~i~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~--~iPVia~GGI~t~~d 189 (222)
T d1y0ea_ 112 YIRTHAPNVEIMADIATVEEAKNAARLGFDYIGTTLHGYTSYTQGQLLYQNDFQFLKDVLQSV--DAKVIAEGNVITPDM 189 (222)
T ss_dssp HHHHHCTTSEEEEECSSHHHHHHHHHTTCSEEECTTTTSSTTSTTCCTTHHHHHHHHHHHHHC--CSEEEEESSCCSHHH
T ss_pred HHHHhCCceEEeecCCCHHHHHHHHHcCCCeEEEeccCCcccccCccchhhHHHHHHHHHhcC--CCcEEEeCCCCCHHH
Confidence 56666777888899999999999999999999998876554322 234567788887776 899999999999999
Q ss_pred HHHHHHcCCCEEEechHHH
Q 017718 292 VFKALALGASGIFIGRPVV 310 (367)
Q Consensus 292 v~kal~lGAd~V~ig~~~l 310 (367)
+.+++++|||+|++||++.
T Consensus 190 ~~~~~~~GAdgV~iGsAi~ 208 (222)
T d1y0ea_ 190 YKRVMDLGVHCSVVGGAIT 208 (222)
T ss_dssp HHHHHHTTCSEEEECHHHH
T ss_pred HHHHHHcCCCEEEEchhhc
Confidence 9999999999999999874
|
| >d1z41a1 c.1.4.1 (A:2-338) NADPH dehydrogenase NamA {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: FMN-linked oxidoreductases family: FMN-linked oxidoreductases domain: NADPH dehydrogenase NamA species: Bacillus subtilis [TaxId: 1423]
Probab=99.27 E-value=5.3e-10 Score=105.94 Aligned_cols=224 Identities=18% Similarity=0.163 Sum_probs=134.9
Q ss_pred ceeEcCeeeccceEeCcccchhccCChh-----hHHHHHHHHHcCCceeecCCCC--------------CCHHH------
Q 017718 62 NTTVLGFKISMPIMIAPTAMQKMAHPEG-----EYATARAASAAGTIMTLSSWST--------------SSVEE------ 116 (367)
Q Consensus 62 st~i~g~~l~~Pi~iAPm~~~~l~~~~~-----e~~~a~aa~~~G~~~~vs~~~~--------------~~~e~------ 116 (367)
..+|.+.++++-|++|||+-..-..++| .+..-+.-++-|+.+++++... .+.+.
T Consensus 7 P~~ig~~~lkNRiv~aPm~~~~~~~~~G~~t~~~~~~y~~rA~gG~GlIite~~~V~~~~~~~~~~~~~~~d~~i~~~k~ 86 (337)
T d1z41a1 7 PITIKDMTLKNRIVMSPMCMYSSHEKDGKLTPFHMAHYISRAIGQVGLIIVEASAVNPQGRITDQDLGIWSDEHIEGFAK 86 (337)
T ss_dssp CEEETTEEESSSEEECCCCCCCCTTSSSCCCHHHHHHHHHHHHTTCSEEEEEEEESSGGGCSSTTSCBCSSTHHHHHHHH
T ss_pred CceECCEEECCCEEeCccCCCccCCCCCCCCHHHHHHHHHHHcCCceEEEECcEEEccccccccCccccccHHHHHHHHH
Confidence 3678999999999999996332111222 2343444445677777654211 01111
Q ss_pred HHh---hCCCceEEEEeecCC---------------------------H-------HHHHHHHHHHHHcCCcEEEEecCC
Q 017718 117 VAS---TGPGIRFFQLYVYKD---------------------------R-------NVVAQLVRRAERAGFKAIALTVDT 159 (367)
Q Consensus 117 i~~---~~~~~~~~QLy~~~d---------------------------~-------~~~~~~l~ra~~~G~~ai~itvd~ 159 (367)
+.+ ......++||.-... . +...+.+++|+++||+++-|+...
T Consensus 87 l~~avh~~G~~i~~QL~h~Gr~~~~~~~~~~ps~~~~~~~~~~p~~lt~~eI~~ii~~f~~AA~ra~~AGfDGVEiH~ah 166 (337)
T d1z41a1 87 LTEQVKEQGSKIGIQLAHAGRKAELEGDIFAPSAIAFDEQSATPVEMSAEKVKETVQEFKQAAARAKEAGFDVIEIHAAH 166 (337)
T ss_dssp HHHHHHHTTCEEEEEEECCGGGCCCSSCCEESSSCCSSTTSCCCEECCHHHHHHHHHHHHHHHHHHHHTTCSEEEEEECT
T ss_pred HHHHhhccccccchhhhcCCCcccccCCCCCCcccccccCCCCCcccCHHHHHHHHHHHHHHHHHHHHcCCCeEEeeccC
Confidence 221 123567889863210 1 234455678889999999998753
Q ss_pred CCCCchhHHhhhhcCCCCccccccccccccCccccccchhhHHHhhhccCcccc---HHHHHhhcCCCEEEEecC-----
Q 017718 160 PRLGRREADIKNRFTLPPFLTLKNFQGLDLGKMDEANDSGLAAYVAGQIDRSLS---WKWLQTITKLPILVKGVL----- 231 (367)
Q Consensus 160 p~~g~r~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~---~~~l~~~~~~Pv~vK~v~----- 231 (367)
-. +-+.|--| ..+.++ + +-.++ +.. - -.|. .+.+|+.++.|++++...
T Consensus 167 Gy-------Ll~qFlSp-~~N~Rt-D--------eYGGs-~en-R-----~Rf~~Eiv~air~~~~~~~~vr~~~~~~~~ 222 (337)
T d1z41a1 167 GY-------LIHEFLSP-LSNHRT-D--------EYGGS-PEN-R-----YRFLREIIDEVKQVWDGPLFVRVSASDYTD 222 (337)
T ss_dssp TS-------HHHHHHCT-TTCCCC-S--------TTSSS-HHH-H-----HHHHHHHHHHHHHHCCSCEEEEEECCCCST
T ss_pred cc-------eeeeecCC-cccccc-c--------cccch-hhh-h-----hhHHHHHHHHHhhhhcccceEEeccccccc
Confidence 22 23333111 111110 0 00111 100 0 0121 237888889999999862
Q ss_pred ---CH----HHHHHHHHcCCcEEEEcCCCCCCC--CCcc-chHHHHHHHHHHhcCCCcEEEecCCCCHHHHHHHHHcC-C
Q 017718 232 ---TA----EDARIAVQAGAAGIIVSNHGARQL--DYVP-ATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALG-A 300 (367)
Q Consensus 232 ---~~----~~a~~~~~~G~d~i~vs~~gg~~~--~~~~-~~~~~l~~i~~~~~~~~~via~GGI~~~~dv~kal~lG-A 300 (367)
+. +.++.+.++|+|.+.++....... ...+ ...+....+++.+ ++||++.|+|.+++++.++|+.| |
T Consensus 223 ~g~~~~~~~~~~~~l~~~g~d~~~~s~g~~~~~~~~~~~~~~~~~~~~ik~~~--~~pvi~~G~i~~~~~ae~~l~~g~~ 300 (337)
T d1z41a1 223 KGLDIADHIGFAKWMKEQGVDLIDCSSGALVHADINVFPGYQVSFAEKIREQA--DMATGAVGMITDGSMAEEILQNGRA 300 (337)
T ss_dssp TSCCHHHHHHHHHHHHHTTCCEEEEECCCSSCCCCCCCTTTTHHHHHHHHHHH--CCEEEECSSCCSHHHHHHHHHTTSC
T ss_pred CccchhhhHHHHHHHHHcCCcccccccccccccccccCCcccHHHHHHHHHhc--CceEEEeCCcCCHHHHHHHHHCCCc
Confidence 23 347888999999999975322111 1112 1344556677777 79999999999999999999998 9
Q ss_pred CEEEechHHHH
Q 017718 301 SGIFIGRPVVY 311 (367)
Q Consensus 301 d~V~ig~~~l~ 311 (367)
|+|++||+++.
T Consensus 301 D~V~~gR~~ia 311 (337)
T d1z41a1 301 DLIFIGRELLR 311 (337)
T ss_dssp SEEEECHHHHH
T ss_pred ceehhhHHHHh
Confidence 99999999985
|
| >d1yxya1 c.1.2.5 (A:4-233) Putative N-acetylmannosamine-6-phosphate 2-epimerase NanE {Streptococcus pyogenes [TaxId: 1314]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Ribulose-phoshate binding barrel family: NanE-like domain: Putative N-acetylmannosamine-6-phosphate 2-epimerase NanE species: Streptococcus pyogenes [TaxId: 1314]
Probab=99.26 E-value=1e-11 Score=110.88 Aligned_cols=93 Identities=22% Similarity=0.248 Sum_probs=75.7
Q ss_pred HHHhhcCCCEEEEecCCHHHHHHHHHcCCcEEEEcCCCCCCCCCccchH-HHHHHHHHHhcCCCcEEEecCCCCHHHHHH
Q 017718 216 WLQTITKLPILVKGVLTAEDARIAVQAGAAGIIVSNHGARQLDYVPATI-MALEEVVKATQGRIPVFLDGGVRRGTDVFK 294 (367)
Q Consensus 216 ~l~~~~~~Pv~vK~v~~~~~a~~~~~~G~d~i~vs~~gg~~~~~~~~~~-~~l~~i~~~~~~~~~via~GGI~~~~dv~k 294 (367)
+++..+..+++.+.+.+.++++.+.++|+|+|.++++++++.+...+.. ..+.++.... ++|||++|||+|++|+.+
T Consensus 123 ~~~~~~~~~~v~~~v~t~~~a~~a~~~Gad~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~ipvia~GGI~t~~d~~~ 200 (230)
T d1yxya1 123 QVKEKYPNQLLMADISTFDEGLVAHQAGIDFVGTTLSGYTPYSRQEAGPDVALIEALCKA--GIAVIAEGKIHSPEEAKK 200 (230)
T ss_dssp HHHHHCTTCEEEEECSSHHHHHHHHHTTCSEEECTTTTSSTTSCCSSSCCHHHHHHHHHT--TCCEEEESCCCSHHHHHH
T ss_pred HHHhcCCCceEecCCCCHHHHHHHHhcCCCEEEeecccccccccccchHHHHHHHHHhcC--CCeEEEeCCCCCHHHHHH
Confidence 5666677889999999999999999999999999888776555443322 2244444444 899999999999999999
Q ss_pred HHHcCCCEEEechHHH
Q 017718 295 ALALGASGIFIGRPVV 310 (367)
Q Consensus 295 al~lGAd~V~ig~~~l 310 (367)
++++|||+|++||++.
T Consensus 201 al~~GAd~V~vGsAi~ 216 (230)
T d1yxya1 201 INDLGVAGIVVGGAIT 216 (230)
T ss_dssp HHTTCCSEEEECHHHH
T ss_pred HHHcCCCEEEEChhhc
Confidence 9999999999999875
|
| >d1djqa1 c.1.4.1 (A:1-340) Trimethylamine dehydrogenase, N-terminal domain {Methylophilus methylotrophus, w3a1 [TaxId: 17]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: FMN-linked oxidoreductases family: FMN-linked oxidoreductases domain: Trimethylamine dehydrogenase, N-terminal domain species: Methylophilus methylotrophus, w3a1 [TaxId: 17]
Probab=99.05 E-value=6e-09 Score=98.59 Aligned_cols=95 Identities=13% Similarity=0.023 Sum_probs=67.8
Q ss_pred HHHHhhc--CCCEEEEecC---------C----HHHHHHHHHcCCcEEEEcCCCCCC----C-----CCccchHHHHHHH
Q 017718 215 KWLQTIT--KLPILVKGVL---------T----AEDARIAVQAGAAGIIVSNHGARQ----L-----DYVPATIMALEEV 270 (367)
Q Consensus 215 ~~l~~~~--~~Pv~vK~v~---------~----~~~a~~~~~~G~d~i~vs~~gg~~----~-----~~~~~~~~~l~~i 270 (367)
+.+|+.+ +.||.+|... . ...+..+.+.|+|.+.++...-.+ . .......+....+
T Consensus 207 ~aIr~~vg~~~~i~~R~s~~~~~~~~~~~~e~~~~~~~~l~~~~vd~~~vs~g~~~~~~~~~~~~~~~~~~~~~~~~~~i 286 (340)
T d1djqa1 207 EKVKHAVGSDCAIATRFGVDTVYGPGQIEAEVDGQKFVEMADSLVDMWDITIGDIAEWGEDAGPSRFYQQGHTIPWVKLV 286 (340)
T ss_dssp HHHHHHHTTTSEEEEEEEEECSSCTTSCCTTTHHHHHHHHHTTTCSEEEEEESCSTTGGGTSCCTTTCCTTTTHHHHHHH
T ss_pred HHHHHHHhhhhhceeeccccccccCCCCchhhhHHHHHHHHhhccceeeeeecccccccccccccccCCccccHHHHHHH
Confidence 3788888 4789999751 1 233567888999999997521100 0 0111233444555
Q ss_pred HHHhcCCCcEEEecCCCCHHHHHHHHHcC-CCEEEechHHHH
Q 017718 271 VKATQGRIPVFLDGGVRRGTDVFKALALG-ASGIFIGRPVVY 311 (367)
Q Consensus 271 ~~~~~~~~~via~GGI~~~~dv~kal~lG-Ad~V~ig~~~l~ 311 (367)
++.+ ++|||+.|||++++++.++|+.| ||+|++|||++.
T Consensus 287 k~~~--~~pVi~~G~i~~~~~a~~~l~~G~aDlV~~gR~~ia 326 (340)
T d1djqa1 287 KQVS--KKPVLGVGRYTDPEKMIEIVTKGYADIIGCARPSIA 326 (340)
T ss_dssp HTTC--SSCEEECSCCCCHHHHHHHHHTTSCSBEEESHHHHH
T ss_pred HHHc--CCeEEEECCCCCHHHHHHHHHCCCccchhhHHHHHH
Confidence 5544 79999999999999999999999 999999999985
|
| >d1ps9a1 c.1.4.1 (A:1-330) 2,4-dienoyl-CoA reductase, N-terminal domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: FMN-linked oxidoreductases family: FMN-linked oxidoreductases domain: 2,4-dienoyl-CoA reductase, N-terminal domain species: Escherichia coli [TaxId: 562]
Probab=99.02 E-value=1.1e-08 Score=96.43 Aligned_cols=95 Identities=17% Similarity=0.096 Sum_probs=66.9
Q ss_pred HHHHhhc--CCCEEEEec--------CCH----HHHHHHHHcCCcEEEEcCCCC--CCCC-Cc--c-c-hHHHHHHHHHH
Q 017718 215 KWLQTIT--KLPILVKGV--------LTA----EDARIAVQAGAAGIIVSNHGA--RQLD-YV--P-A-TIMALEEVVKA 273 (367)
Q Consensus 215 ~~l~~~~--~~Pv~vK~v--------~~~----~~a~~~~~~G~d~i~vs~~gg--~~~~-~~--~-~-~~~~l~~i~~~ 273 (367)
+.+|+.+ +.||.+|.. .+. +.++.+.++|+|.+.++..+. .... .. + . ......++++.
T Consensus 199 ~air~~vg~d~~v~~R~s~~d~~~~g~~~~~~~~~~~~l~~~g~d~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~ik~~ 278 (330)
T d1ps9a1 199 RAVRERVGNDFIIIYRLSMLDLVEDGGTFAETVELAQAIEAAGATIINTGIGWHEARIPTIATPVPRGAFSWVTRKLKGH 278 (330)
T ss_dssp HHHHHHHCSSSEEEEEEEEECCSTTCCCHHHHHHHHHHHHHHTCSEEEEEECBTTCSSCSSSTTSCTTTTHHHHHHHTTS
T ss_pred HHHHHHcCCCceeEecccccccccCCCCHHHHHHHHHHHHHhhhhhhhcccccccccccccCCCCcchhHHHHHHHHHhh
Confidence 3788877 477888875 233 336788899999999874221 1111 11 1 1 12233444444
Q ss_pred hcCCCcEEEecCCCCHHHHHHHHHcC-CCEEEechHHHH
Q 017718 274 TQGRIPVFLDGGVRRGTDVFKALALG-ASGIFIGRPVVY 311 (367)
Q Consensus 274 ~~~~~~via~GGI~~~~dv~kal~lG-Ad~V~ig~~~l~ 311 (367)
+ ++|||+.|+|.+++++.++|+.| ||+|++||+++.
T Consensus 279 ~--~~pvi~~G~i~~~~~ae~~l~~g~~D~V~~gR~~ia 315 (330)
T d1ps9a1 279 V--SLPLVTTNRINDPQVADDILSRGDADMVSMARPFLA 315 (330)
T ss_dssp C--SSCEEECSSCCSHHHHHHHHHTTSCSEEEESTHHHH
T ss_pred C--CceEEEeCCCCCHHHHHHHHHCCCcchhHhhHHHHh
Confidence 4 79999999999999999999998 999999999984
|
| >d1vyra_ c.1.4.1 (A:) Pentaerythritol tetranirate reductase {Enterobacter cloacae [TaxId: 550]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: FMN-linked oxidoreductases family: FMN-linked oxidoreductases domain: Pentaerythritol tetranirate reductase species: Enterobacter cloacae [TaxId: 550]
Probab=98.52 E-value=7e-06 Score=77.67 Aligned_cols=91 Identities=12% Similarity=0.012 Sum_probs=62.9
Q ss_pred HHHHhhcC-CCEEEEecC------------CHHH----HHHHHHcCCcEEEEcCCCCCCCCCccc-hHHHHHHHHHHhcC
Q 017718 215 KWLQTITK-LPILVKGVL------------TAED----ARIAVQAGAAGIIVSNHGARQLDYVPA-TIMALEEVVKATQG 276 (367)
Q Consensus 215 ~~l~~~~~-~Pv~vK~v~------------~~~~----a~~~~~~G~d~i~vs~~gg~~~~~~~~-~~~~l~~i~~~~~~ 276 (367)
+.+|+.++ -+|.++... +.++ ++.+.+.|+|+|.+|... ....++ ....-..+++.+
T Consensus 218 ~aIr~~~g~d~i~~r~s~~~~~~~~~~gg~~~~e~~~~~~~l~~~gvd~i~vs~~~---~~~~~~~~~~~~~~~~~~~-- 292 (363)
T d1vyra_ 218 DAVCNEWSADRIGIRVSPIGTFQNVDNGPNEEADALYLIEELAKRGIAYLHMSETD---LAGGKPYSEAFRQKVRERF-- 292 (363)
T ss_dssp HHHHHHSCGGGEEEEECCSSCBTTBCCCTTHHHHHHHHHHHHHHTTCSEEEEECCB---TTBCCCCCHHHHHHHHHHC--
T ss_pred hhhhhhcCCCCcceeecccccccchhhcccchHHHHHHHHHHHhcCCeeeecccCC---ccCCccccHHHHHHHHHhc--
Confidence 37787774 357777651 1223 667889999999998421 222222 223334555555
Q ss_pred CCcEEEecCCCCHHHHHHHHHcC-CCEEEechHHHH
Q 017718 277 RIPVFLDGGVRRGTDVFKALALG-ASGIFIGRPVVY 311 (367)
Q Consensus 277 ~~~via~GGI~~~~dv~kal~lG-Ad~V~ig~~~l~ 311 (367)
++||++.| +.+++++.++|+-| ||+|.+||++|.
T Consensus 293 ~~~vi~~G-~~t~~~ae~~l~~G~~DlV~~gR~lia 327 (363)
T d1vyra_ 293 HGVIIGAG-AYTAEKAEDLIGKGLIDAVAFGRDYIA 327 (363)
T ss_dssp CSEEEEES-SCCHHHHHHHHHTTSCSEEEESHHHHH
T ss_pred CceEEecC-CCCHHHHHHHHHCCCcceehhhHHHHH
Confidence 67888766 56999999999999 899999999985
|
| >d1gwja_ c.1.4.1 (A:) Morphinone reductase {Pseudomonas putida [TaxId: 303]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: FMN-linked oxidoreductases family: FMN-linked oxidoreductases domain: Morphinone reductase species: Pseudomonas putida [TaxId: 303]
Probab=98.42 E-value=1.2e-05 Score=76.26 Aligned_cols=93 Identities=12% Similarity=-0.027 Sum_probs=62.3
Q ss_pred HHHHhhcC-CCEEEEecC----------CH-----HHHHHHHHcCCcEEEEcCCCCCCCCCccchHHHHHHHHHHhcCCC
Q 017718 215 KWLQTITK-LPILVKGVL----------TA-----EDARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRI 278 (367)
Q Consensus 215 ~~l~~~~~-~Pv~vK~v~----------~~-----~~a~~~~~~G~d~i~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~~ 278 (367)
+.+|+.++ ..|+++... .. ..+..+...|++++.++...-....... .......+++.+ ++
T Consensus 221 ~aIR~~vg~~~v~~r~~~~~~~~g~~~~~~~~~~~~~~~~ld~~~i~~~~~~~~~~~~~~~~~-~~~~~~~i~~~~--~~ 297 (374)
T d1gwja_ 221 DAVAEVFGPERVGIRLTPFLELFGLTDDEPEAMAFYLAGELDRRGLAYLHFNEPDWIGGDITY-PEGFREQMRQRF--KG 297 (374)
T ss_dssp HHHHHHHCGGGEEEEECTTCCCTTCCCSCHHHHHHHHHHHHHHHTCSEEEEECSCBTTBCCCC-CTTHHHHHHHHC--CS
T ss_pred HHHHHHcCCcceeeeeeeeccccCCcccchHHHHHHhhccccccCceEEEeccCcccCCCcch-hHHHHHHHHHHc--CC
Confidence 37887773 456666641 01 2255667889999998742211111111 111234566666 89
Q ss_pred cEEEecCCCCHHHHHHHHHcC-CCEEEechHHHH
Q 017718 279 PVFLDGGVRRGTDVFKALALG-ASGIFIGRPVVY 311 (367)
Q Consensus 279 ~via~GGI~~~~dv~kal~lG-Ad~V~ig~~~l~ 311 (367)
||++.|+| +++.+.++|+-| ||+|++||++|.
T Consensus 298 pvi~~G~i-~~~~ae~~l~~g~aDlV~~gR~~ia 330 (374)
T d1gwja_ 298 GLIYCGNY-DAGRAQARLDDNTADAVAFGRPFIA 330 (374)
T ss_dssp EEEEESSC-CHHHHHHHHHTTSCSEEEESHHHHH
T ss_pred CEEEECCc-CHHHHHHHHHcCCCcEehhhHHHHH
Confidence 99999999 799999999988 999999999985
|
| >d1icpa_ c.1.4.1 (A:) 12-oxophytodienoate reductase (OPR, OYE homolog) {Tomato (Lycopersicon esculentum), OPR1 [TaxId: 4081]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: FMN-linked oxidoreductases family: FMN-linked oxidoreductases domain: 12-oxophytodienoate reductase (OPR, OYE homolog) species: Tomato (Lycopersicon esculentum), OPR1 [TaxId: 4081]
Probab=98.35 E-value=1.4e-05 Score=75.52 Aligned_cols=93 Identities=15% Similarity=-0.008 Sum_probs=56.6
Q ss_pred HHHHhhcC-CCEEEEecC---------CHHH------HHHHHHcCCcEEEEcCCCCCCCC-CccchHHHHHHHHHHhcCC
Q 017718 215 KWLQTITK-LPILVKGVL---------TAED------ARIAVQAGAAGIIVSNHGARQLD-YVPATIMALEEVVKATQGR 277 (367)
Q Consensus 215 ~~l~~~~~-~Pv~vK~v~---------~~~~------a~~~~~~G~d~i~vs~~gg~~~~-~~~~~~~~l~~i~~~~~~~ 277 (367)
+.+|+.++ -+|+++.+. +.++ ++.+...+++.+.++. +..... ......+....+++.+ +
T Consensus 216 ~aIr~~~g~~~i~~r~s~~~~~~~~g~~~~~~~~l~~~~~~~~~d~~~~~~~~-~~~~~~~~~~~~~~~~~~i~~~~--~ 292 (364)
T d1icpa_ 216 EAVANEIGSDRVGIRISPFAHYNEAGDTNPTALGLYMVESLNKYDLAYCHVVE-PRMKTAWEKIECTESLVPMRKAY--K 292 (364)
T ss_dssp HHHHHHHCGGGEEEEECTTCCTTTCCCSCHHHHHHHHHHHHGGGCCSEEEEEC-CSCCC------CCCCSHHHHHHC--C
T ss_pred hhhhcccCCcceeEEecccccccCCcCcchHHHHHHHHHHhhccceeeeeeec-CcccccccccccHHHHHHHHHhc--C
Confidence 37887774 467777752 1122 2334455566666543 211111 1111112234556666 7
Q ss_pred CcEEEecCCCCHHHHHHHHHcC-CCEEEechHHHH
Q 017718 278 IPVFLDGGVRRGTDVFKALALG-ASGIFIGRPVVY 311 (367)
Q Consensus 278 ~~via~GGI~~~~dv~kal~lG-Ad~V~ig~~~l~ 311 (367)
.|+++.||+ +++++.++|+-| ||+|++||+++.
T Consensus 293 ~~vi~~g~~-~~~~ae~~l~~g~aD~V~~gR~~ia 326 (364)
T d1icpa_ 293 GTFIVAGGY-DREDGNRALIEDRADLVAYGRLFIS 326 (364)
T ss_dssp SCEEEESSC-CHHHHHHHHHTTSCSEEEESHHHHH
T ss_pred CCEEEECCC-CHHHHHHHHHcCCCceehhHHHHHH
Confidence 899998875 789999999986 999999999985
|
| >d1wa3a1 c.1.10.1 (A:2-203) KDPG aldolase {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Aldolase family: Class I aldolase domain: KDPG aldolase species: Thermotoga maritima [TaxId: 2336]
Probab=98.31 E-value=1.8e-06 Score=75.20 Aligned_cols=167 Identities=11% Similarity=0.097 Sum_probs=101.8
Q ss_pred EEEEeecCCHHHHHHHHHHHHHcCCcEEEEecCCCCCCchhHHhhhhcCCCCcccc--ccccccccCccccccchhhHHH
Q 017718 126 FFQLYVYKDRNVVAQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLTL--KNFQGLDLGKMDEANDSGLAAY 203 (367)
Q Consensus 126 ~~QLy~~~d~~~~~~~l~ra~~~G~~ai~itvd~p~~g~r~~~~~~~~~~p~~~~~--~~~~~~~~~~~~~~~~~~~~~~ 203 (367)
.+.+....+.+...++++.+.+.|++.+-||+.+|..-.--++++..+. | .+.. ..+...+ .. +....+..++
T Consensus 11 iipvlr~~~~~~a~~~~~al~~~Gi~~iEitlr~p~a~~~i~~l~~~~~-~-~~~vGaGTV~~~~--~~-~~a~~aGa~f 85 (202)
T d1wa3a1 11 IVAVLRANSVEEAKEKALAVFEGGVHLIEITFTVPDADTVIKELSFLKE-K-GAIIGAGTVTSVE--QC-RKAVESGAEF 85 (202)
T ss_dssp EEEEECCSSHHHHHHHHHHHHHTTCCEEEEETTSTTHHHHHHHTHHHHH-T-TCEEEEESCCSHH--HH-HHHHHHTCSE
T ss_pred EEEEEECCCHHHHHHHHHHHHHcCCCEEEEecCCccHHHHHHHHHHhcC-C-CcEEEecccccHH--HH-HHHHhhcccE
Confidence 4555557788888899999999999999999999874332233332221 1 1111 0000000 00 0000000111
Q ss_pred hhhccCccccHH--HHHhhcCCCEEEEecCCHHHHHHHHHcCCcEEEEcCCCCCCCCCccchHHHHHHHHHHhcCCCcEE
Q 017718 204 VAGQIDRSLSWK--WLQTITKLPILVKGVLTAEDARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVF 281 (367)
Q Consensus 204 ~~~~~d~~~~~~--~l~~~~~~Pv~vK~v~~~~~a~~~~~~G~d~i~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~~~vi 281 (367)
+. .|.++-+ ......++|++ =+++++.++..+.++|+|.+.+.... ..|+ ..++.+..-++ ++|++
T Consensus 86 iv---sP~~~~~v~~~~~~~~i~~i-PGv~TpsEi~~A~~~G~~~lK~fPa~----~~G~---~~lk~l~~p~p-~i~~i 153 (202)
T d1wa3a1 86 IV---SPHLDEEISQFCKEKGVFYM-PGVMTPTELVKAMKLGHTILKLFPGE----VVGP---QFVKAMKGPFP-NVKFV 153 (202)
T ss_dssp EE---CSSCCHHHHHHHHHHTCEEE-CEECSHHHHHHHHHTTCCEEEETTHH----HHHH---HHHHHHHTTCT-TCEEE
T ss_pred Ee---CCCCcHHHHHHHHhcCCcee-CCcCcHHHHHHHHHCCCCEEEecchh----hcCH---HHHHHHhCccc-CCcEE
Confidence 11 2333322 22223577775 47899999999999999999985311 0112 34555544333 79999
Q ss_pred EecCCCCHHHHHHHHHcCCCEEEechHHH
Q 017718 282 LDGGVRRGTDVFKALALGASGIFIGRPVV 310 (367)
Q Consensus 282 a~GGI~~~~dv~kal~lGAd~V~ig~~~l 310 (367)
..||| +.+++..++.+||.+|.+|+.+.
T Consensus 154 ptGGI-~~~n~~~~l~aga~avg~Gs~l~ 181 (202)
T d1wa3a1 154 PTGGV-NLDNVCEWFKAGVLAVGVGSALV 181 (202)
T ss_dssp EBSSC-CTTTHHHHHHHTCSCEEECHHHH
T ss_pred eeCCC-CHHHHHHHHHCCCeEEEEchhhc
Confidence 99999 78999999999999999998664
|
| >d1rd5a_ c.1.2.4 (A:) Trp synthase alpha-subunit {Maize (Zea mays) [TaxId: 4577]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Ribulose-phoshate binding barrel family: Tryptophan biosynthesis enzymes domain: Trp synthase alpha-subunit species: Maize (Zea mays) [TaxId: 4577]
Probab=98.23 E-value=8.9e-05 Score=66.68 Aligned_cols=70 Identities=29% Similarity=0.331 Sum_probs=49.7
Q ss_pred HHHHHHHHHHhcCCCcEEEecCCCCHHHHHHHHHcCCCEEEechHHHHHhhccCh-HHHHHHHHHHHHHHHHH
Q 017718 264 IMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFIGRPVVYSLAAEGE-KGVRRVLEMLREEFELA 335 (367)
Q Consensus 264 ~~~l~~i~~~~~~~~~via~GGI~~~~dv~kal~lGAd~V~ig~~~l~~l~~~G~-~~v~~~i~~l~~el~~~ 335 (367)
.+.+.++++.. ++||++--||++++|+.+....|||+|.||++++.-+..... ....+.++.+.++|+..
T Consensus 189 ~~~i~~ik~~t--~~Pi~vGFGI~~~e~v~~~~~~gaDGvIVGSaiv~~i~~~~~~~~~~~~~~~~~~~lk~a 259 (261)
T d1rd5a_ 189 ESLIQEVKKVT--NKPVAVGFGISKPEHVKQIAQWGADGVIIGSAMVRQLGEAASPKQGLRRLEEYARGMKNA 259 (261)
T ss_dssp HHHHHHHHHHC--SSCEEEESCCCSHHHHHHHHHTTCSEEEECHHHHHHHHSSSSHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhhhcc--CCCeEEEcCCCCHHHHHHHHhcCCCEEEECHHHHHHHHHcCCHHHHHHHHHHHHHHHHHh
Confidence 45677776654 899999999999999999999999999999999876542211 11123344455555443
|
| >d1qopa_ c.1.2.4 (A:) Trp synthase alpha-subunit {Salmonella typhimurium [TaxId: 90371]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Ribulose-phoshate binding barrel family: Tryptophan biosynthesis enzymes domain: Trp synthase alpha-subunit species: Salmonella typhimurium [TaxId: 90371]
Probab=98.20 E-value=7.8e-05 Score=67.29 Aligned_cols=153 Identities=16% Similarity=0.145 Sum_probs=94.2
Q ss_pred CCHHHHHHHHHHHHHcCCcEEEEecCCCCCCchhHHhhhhcCCCCccccccccccccCccccccchhhHHHhhhccCccc
Q 017718 133 KDRNVVAQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLTLKNFQGLDLGKMDEANDSGLAAYVAGQIDRSL 212 (367)
Q Consensus 133 ~d~~~~~~~l~ra~~~G~~ai~itvd~p~~g~r~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~ 212 (367)
.|.+.+.++++.+.+.|++.|-+.+ |.. -|- ..++ .-..+..+.+........
T Consensus 28 P~~~~~~~~~~~l~~~GaDiiElGi--PfS------------DP~----------aDGp---vIq~a~~~al~~G~~~~~ 80 (267)
T d1qopa_ 28 PGIEQSLKIIDTLIDAGADALELGV--PFS------------DPL----------ADGP---TIQNANLRAFAAGVTPAQ 80 (267)
T ss_dssp SCHHHHHHHHHHHHHTTCSSEEEEC--CCS------------CCT----------TCCH---HHHHHHHHHHHTTCCHHH
T ss_pred CCHHHHHHHHHHHHHcCCCEEEECC--CCC------------ccc----------ccch---HHHhhhhhcccccchhhh
Confidence 4677889999999999999887643 321 110 0000 001111222222111111
Q ss_pred cHH---HHHhhc-CCCEEEEecC------C-HHHHHHHHHcCCcEEEEcCC---------------CC---------CC-
Q 017718 213 SWK---WLQTIT-KLPILVKGVL------T-AEDARIAVQAGAAGIIVSNH---------------GA---------RQ- 256 (367)
Q Consensus 213 ~~~---~l~~~~-~~Pv~vK~v~------~-~~~a~~~~~~G~d~i~vs~~---------------gg---------~~- 256 (367)
.++ .+|+.. ..|+++=+-. . .+.++.+.++|+||+++-.- |= +.
T Consensus 81 ~~~~~~~~r~~~~~~pivlm~Y~N~i~~~G~~~f~~~~~~~Gv~GliipDlP~ee~~~~~~~~~~~~l~~I~lvaPtt~~ 160 (267)
T d1qopa_ 81 CFEMLAIIREKHPTIPIGLLMYANLVFNNGIDAFYARCEQVGVDSVLVADVPVEESAPFRQAALRHNIAPIFICPPNADD 160 (267)
T ss_dssp HHHHHHHHHHHCSSSCEEEEECHHHHHTTCHHHHHHHHHHHTCCEEEETTCCGGGCHHHHHHHHHTTCEEECEECTTCCH
T ss_pred hhhhhhhhcccccccceEEEeeccchhhcCchHHHHHHHhcCCCceeccchhhhhhHHHHHhhhccCceEEEEecccccH
Confidence 222 556654 6898775421 1 24588999999999998431 10 00
Q ss_pred ------------------CC--Cc------cchHHHHHHHHHHhcCCCcEEEecCCCCHHHHHHHHHcCCCEEEechHHH
Q 017718 257 ------------------LD--YV------PATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFIGRPVV 310 (367)
Q Consensus 257 ------------------~~--~~------~~~~~~l~~i~~~~~~~~~via~GGI~~~~dv~kal~lGAd~V~ig~~~l 310 (367)
.. +| ....+.+.++++.. ++||++--||++++|+.+++..|||+|.||++++
T Consensus 161 ~Ri~~i~~~a~gFiY~vs~~GvTG~~~~~~~~~~~~i~~ik~~t--~~Pv~vGFGI~~~e~v~~~~~~~ADGvIVGSAiv 238 (267)
T d1qopa_ 161 DLLRQVASYGRGYTYLLSRSGVTGAENRGALPLHHLIEKLKEYH--AAPALQGFGISSPEQVSAAVRAGAAGAISGSAIV 238 (267)
T ss_dssp HHHHHHHHHCCSCEEEESSSSCCCSSSCC--CCHHHHHHHHHTT--CCCEEEESSCCSHHHHHHHHHTTCSEEEECHHHH
T ss_pred HHHHHHHhhCchhhhhhcccccCCcccccchhHHHHHHHHhhhc--cCCceeecccCCHHHHHHHHhcCCCEEEECHHHH
Confidence 00 11 11235566666544 8999999999999999999999999999999998
Q ss_pred HHhh
Q 017718 311 YSLA 314 (367)
Q Consensus 311 ~~l~ 314 (367)
.-+.
T Consensus 239 k~i~ 242 (267)
T d1qopa_ 239 KIIE 242 (267)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 8654
|
| >d1a53a_ c.1.2.4 (A:) Indole-3-glycerophosphate synthase, IPGS {Archaeon Sulfolobus solfataricus [TaxId: 2287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Ribulose-phoshate binding barrel family: Tryptophan biosynthesis enzymes domain: Indole-3-glycerophosphate synthase, IPGS species: Archaeon Sulfolobus solfataricus [TaxId: 2287]
Probab=98.13 E-value=4.8e-05 Score=67.75 Aligned_cols=87 Identities=15% Similarity=0.261 Sum_probs=67.1
Q ss_pred cCCCEEEEecCCHHHHHHHHHcCCcEEEEcCCCCCCCCCccchHHHHHHHHHHhcCCCcEEEecCCCCHHHHHHHHHcCC
Q 017718 221 TKLPILVKGVLTAEDARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGA 300 (367)
Q Consensus 221 ~~~Pv~vK~v~~~~~a~~~~~~G~d~i~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~~~via~GGI~~~~dv~kal~lGA 300 (367)
.++-++| .+.+.++++++.++|++.|-+.|..-.++. ...+...++...++.++.+|+.|||.+.+|+.++..+||
T Consensus 151 lgl~~Lv-Evh~~~El~~a~~~~a~iIGINnRnL~t~~---vd~~~~~~L~~~ip~~~~~IaESGI~t~~dv~~l~~~G~ 226 (247)
T d1a53a_ 151 YGMEPLI-EINDENDLDIALRIGARFIGINSRDLETLE---INKENQRKLISMIPSNVVKVAESGISERNEIEELRKLGV 226 (247)
T ss_dssp TTCCCEE-EECSHHHHHHHHHTTCSEEEEESBCTTTCC---BCHHHHHHHHHHSCTTSEEEEESCCCCHHHHHHHHHTTC
T ss_pred HhhhHHh-hcCCHHHHHHHHhCCCCeEeeeccChhhhh---hhhhHHHHHHhhCCCCCeEEEecCCCCHHHHHHHHHCCC
Confidence 4555544 577889999999999998888664433333 333444455566777889999999999999999999999
Q ss_pred CEEEechHHHH
Q 017718 301 SGIFIGRPVVY 311 (367)
Q Consensus 301 d~V~ig~~~l~ 311 (367)
|+|.||+.+|.
T Consensus 227 davLIGeaLmk 237 (247)
T d1a53a_ 227 NAFLIGSSLMR 237 (247)
T ss_dssp CEEEECHHHHH
T ss_pred CEEEECHHHcC
Confidence 99999999986
|
| >d1q45a_ c.1.4.1 (A:) 12-oxophytodienoate reductase (OPR, OYE homolog) {Thale cress (Arabidopsis thaliana), OPR3 [TaxId: 3702]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: FMN-linked oxidoreductases family: FMN-linked oxidoreductases domain: 12-oxophytodienoate reductase (OPR, OYE homolog) species: Thale cress (Arabidopsis thaliana), OPR3 [TaxId: 3702]
Probab=98.09 E-value=0.00019 Score=67.81 Aligned_cols=68 Identities=15% Similarity=0.087 Sum_probs=46.1
Q ss_pred HcCCcEEEEcCCCCCCC---CC---cc--chHHHHHHHHHHhcCCCcEEEecCCCCHHHHHHHHHcC-CCEEEechHHHH
Q 017718 241 QAGAAGIIVSNHGARQL---DY---VP--ATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALG-ASGIFIGRPVVY 311 (367)
Q Consensus 241 ~~G~d~i~vs~~gg~~~---~~---~~--~~~~~l~~i~~~~~~~~~via~GGI~~~~dv~kal~lG-Ad~V~ig~~~l~ 311 (367)
..+++++.++....... .. ++ ........+++.+ ++||+++||+ +++.+.++|+.| ||+|++||+++.
T Consensus 265 ~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~ik~~~--~~pv~~~Gg~-~~~~ae~~l~~G~~DlV~~gR~lia 341 (380)
T d1q45a_ 265 GSKLAYLHVTQPRYHAYGQTESGRQGSDEEEAKLMKSLRMAY--NGTFMSSGGF-NKELGMQAVQQGDADLVSYGRLFIA 341 (380)
T ss_dssp SSCCSEEEEECCC---------------CHHHHHHHHHHHHS--CSCEEEESSC-CHHHHHHHHHTTSCSEEEESHHHHH
T ss_pred cccceeEEeccCcccccccccccccCchhhhHHHHHHHhhcc--CCcEEeCCCC-CHHHHHHHHHcCCccchhhhHHHHH
Confidence 36788888874221110 00 11 1223445555555 7999999998 699999999998 999999999985
|
| >d1xm3a_ c.1.31.1 (A:) Thiazole biosynthesis protein ThiG {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: ThiG-like family: ThiG-like domain: Thiazole biosynthesis protein ThiG species: Bacillus subtilis [TaxId: 1423]
Probab=98.07 E-value=1e-05 Score=71.25 Aligned_cols=85 Identities=20% Similarity=0.264 Sum_probs=69.1
Q ss_pred CCCEEEEecCCHHHHHHHHHcCCcEEEEcCC-CCCCCCCccchHHHHHHHHHHhcCCCcEEEecCCCCHHHHHHHHHcCC
Q 017718 222 KLPILVKGVLTAEDARIAVQAGAAGIIVSNH-GARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGA 300 (367)
Q Consensus 222 ~~Pv~vK~v~~~~~a~~~~~~G~d~i~vs~~-gg~~~~~~~~~~~~l~~i~~~~~~~~~via~GGI~~~~dv~kal~lGA 300 (367)
+.-|+.=...++..|++++++|+..|.--+. -|+ .-|..+.+.|..|++.. ++|||+|.||.++.|+.+++.+||
T Consensus 125 GF~VlpY~~~D~v~ak~Le~~Gc~avMPlgsPIGS--g~Gl~n~~~l~~i~~~~--~vPvIvDAGIG~pSdAa~AMElG~ 200 (251)
T d1xm3a_ 125 GFIVLPYTSDDVVLARKLEELGVHAIMPGASPIGS--GQGILNPLNLSFIIEQA--KVPVIVDAGIGSPKDAAYAMELGA 200 (251)
T ss_dssp TCCEEEEECSCHHHHHHHHHHTCSCBEECSSSTTC--CCCCSCHHHHHHHHHHC--SSCBEEESCCCSHHHHHHHHHTTC
T ss_pred CcEEEEecCCCHHHHHHHHHcCChhHHHhhhhhhc--CCCcCChHHHHHHHhcC--CccEEEecCCCCHHHHHHHHHccC
Confidence 5667666678899999999999999886432 111 12456777888888775 899999999999999999999999
Q ss_pred CEEEechHHH
Q 017718 301 SGIFIGRPVV 310 (367)
Q Consensus 301 d~V~ig~~~l 310 (367)
|+|.+-+++-
T Consensus 201 daVLvNTAIA 210 (251)
T d1xm3a_ 201 DGVLLNTAVS 210 (251)
T ss_dssp SEEEESHHHH
T ss_pred CEEEechhhh
Confidence 9999999774
|
| >d1geqa_ c.1.2.4 (A:) Trp synthase alpha-subunit {Archaeon Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Ribulose-phoshate binding barrel family: Tryptophan biosynthesis enzymes domain: Trp synthase alpha-subunit species: Archaeon Pyrococcus furiosus [TaxId: 2261]
Probab=98.07 E-value=0.00013 Score=65.02 Aligned_cols=148 Identities=15% Similarity=0.167 Sum_probs=91.2
Q ss_pred HHHhhCCCceEEEEeecCCHHH-HHHHHHHHHHcCCcEEEEecCCCCCCchhHHhhhhcCCCCccccccccccccCcccc
Q 017718 116 EVASTGPGIRFFQLYVYKDRNV-VAQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLTLKNFQGLDLGKMDE 194 (367)
Q Consensus 116 ~i~~~~~~~~~~QLy~~~d~~~-~~~~l~ra~~~G~~ai~itvd~p~~g~r~~~~~~~~~~p~~~~~~~~~~~~~~~~~~ 194 (367)
++.+....|..+--|.+.--.. .++.+++++++|++++++ .|.|..
T Consensus 74 ~~r~~~~~pivlm~Y~N~i~~~G~~~f~~~~~~~Gv~Glii-pDLP~e-------------------------------- 120 (248)
T d1geqa_ 74 EFRRHSSTPIVLMTYYNPIYRAGVRNFLAEAKASGVDGILV-VDLPVF-------------------------------- 120 (248)
T ss_dssp HHHTTCCCCEEEEECHHHHHHHCHHHHHHHHHHHTCCEEEE-TTCCGG--------------------------------
T ss_pred HHhhcCCCcEEEEeccccccccCHHHHhhhhcccCeeEEec-cCCcHH--------------------------------
Confidence 3443333566666664321111 468899999999999875 454421
Q ss_pred ccchhhHHHhhhccCccccHH-HHHhhcCCCEEEEec--CCHHHHHHHHHcCCcEEEEcCCCCCC-CCC--ccchHHHHH
Q 017718 195 ANDSGLAAYVAGQIDRSLSWK-WLQTITKLPILVKGV--LTAEDARIAVQAGAAGIIVSNHGARQ-LDY--VPATIMALE 268 (367)
Q Consensus 195 ~~~~~~~~~~~~~~d~~~~~~-~l~~~~~~Pv~vK~v--~~~~~a~~~~~~G~d~i~vs~~gg~~-~~~--~~~~~~~l~ 268 (367)
..-.|. .++ ..++.++.=.. .+.+-.+...+..-.+|.+...-|.+ ... .....+.+.
T Consensus 121 ---------------E~~~~~~~~~-~~gl~~I~lvaPtt~~~ri~~i~~~s~gFiY~vs~~GvTG~~~~~~~~~~~~v~ 184 (248)
T d1geqa_ 121 ---------------HAKEFTEIAR-EEGIKTVFLAAPNTPDERLKVIDDMTTGFVYLVSLYGTTGAREEIPKTAYDLLR 184 (248)
T ss_dssp ---------------GHHHHHHHHH-HHTCEEEEEECTTCCHHHHHHHHHHCSSEEEEECCC-------CCCHHHHHHHH
T ss_pred ---------------HHHHHHhhcc-ccCcceEEEecccchhHHHHHHHhcCCCeEEEEecccccccchhhhhhHHHHHH
Confidence 000222 233 34554433222 34566766666666677764433321 111 122456778
Q ss_pred HHHHHhcCCCcEEEecCCCCHHHHHHHHHcCCCEEEechHHHHHhh
Q 017718 269 EVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFIGRPVVYSLA 314 (367)
Q Consensus 269 ~i~~~~~~~~~via~GGI~~~~dv~kal~lGAd~V~ig~~~l~~l~ 314 (367)
++++.. ++||++--||++++|+.+++..|||+|.+|++++.-+.
T Consensus 185 ~vk~~t--~~Pv~vGFGI~~~e~v~~~~~~~ADGvIVGSaiv~~i~ 228 (248)
T d1geqa_ 185 RAKRIC--RNKVAVGFGVSKREHVVSLLKEGANGVVVGSALVKIIG 228 (248)
T ss_dssp HHHHHC--SSCEEEESCCCSHHHHHHHHHTTCSEEEECHHHHHHHH
T ss_pred HHhhhc--ccceeeecccCCHHHHHHHHhcCCCEEEECHHHHHHHH
Confidence 887765 79999988999999999999999999999999987654
|
| >d1wv2a_ c.1.31.1 (A:) Thiazole biosynthesis protein ThiG {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: ThiG-like family: ThiG-like domain: Thiazole biosynthesis protein ThiG species: Pseudomonas aeruginosa [TaxId: 287]
Probab=98.01 E-value=2e-05 Score=69.79 Aligned_cols=86 Identities=16% Similarity=0.254 Sum_probs=66.5
Q ss_pred CCCEEEEecCCHHHHHHHHHcCCcEEEEcCC-CCCCCCCccchHHHHHHHHHHhcCCCcEEEecCCCCHHHHHHHHHcCC
Q 017718 222 KLPILVKGVLTAEDARIAVQAGAAGIIVSNH-GARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGA 300 (367)
Q Consensus 222 ~~Pv~vK~v~~~~~a~~~~~~G~d~i~vs~~-gg~~~~~~~~~~~~l~~i~~~~~~~~~via~GGI~~~~dv~kal~lGA 300 (367)
+.-|+.=...++-.++++++.|+..+.--+. .|+. .|......+..+++.. ++|||+|+||.++.|+.++|.+||
T Consensus 127 gF~Vlpy~~~D~v~ak~le~~Gc~~vMplgsPIGsg--~Gi~n~~~l~~i~~~~--~vpvivdAGIg~psdaa~AMElG~ 202 (243)
T d1wv2a_ 127 GFDVMVYTSDDPIIARQLAEIGCIAVMPLAGLIGSG--LGICNPYNLRIILEEA--KVPVLVDAGVGTASDAAIAMELGC 202 (243)
T ss_dssp TCEEEEEECSCHHHHHHHHHSCCSEEEECSSSTTCC--CCCSCHHHHHHHHHHC--SSCBEEESCCCSHHHHHHHHHHTC
T ss_pred ceEEEeccCCCHHHHhHHHHcCceeeeecccccccc--cccccHHHHHhccccC--CcceEeecccCCHHHHHHHHHccC
Confidence 4455555567888999999999998876543 2211 2344556666666655 899999999999999999999999
Q ss_pred CEEEechHHHH
Q 017718 301 SGIFIGRPVVY 311 (367)
Q Consensus 301 d~V~ig~~~l~ 311 (367)
|+|.+.|++..
T Consensus 203 dgVLvnsaIa~ 213 (243)
T d1wv2a_ 203 EAVLMNTAIAH 213 (243)
T ss_dssp SEEEESHHHHT
T ss_pred CEEEechHhhc
Confidence 99999998754
|
| >d1oyaa_ c.1.4.1 (A:) Old yellow enzyme (OYE) {Lager yeast (Saccharomyces pastorianus) [TaxId: 27292]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: FMN-linked oxidoreductases family: FMN-linked oxidoreductases domain: Old yellow enzyme (OYE) species: Lager yeast (Saccharomyces pastorianus) [TaxId: 27292]
Probab=98.01 E-value=7.2e-05 Score=71.41 Aligned_cols=40 Identities=20% Similarity=0.129 Sum_probs=34.1
Q ss_pred HHHHhcCCCcEEEecCCCCHHHHHHHHHc-CCCEEEechHHHH
Q 017718 270 VVKATQGRIPVFLDGGVRRGTDVFKALAL-GASGIFIGRPVVY 311 (367)
Q Consensus 270 i~~~~~~~~~via~GGI~~~~dv~kal~l-GAd~V~ig~~~l~ 311 (367)
+++.+ ++|||+.|||.+..++.+.+.. |||+|.+||++|.
T Consensus 312 ik~~~--~~PVi~~G~i~~~~~~~~~i~~~~aDlV~~gR~lia 352 (399)
T d1oyaa_ 312 VYSIW--KGPVIRAGNFALHPEVVREEVKDKRTLIGYGRFFIS 352 (399)
T ss_dssp HHHHC--CSCEEEESSCTTCHHHHHHHTTSTTEEEECCHHHHH
T ss_pred HHHHh--CCCEEEECCCCChHHHHHHHHcCCCeEhHHHHHHHH
Confidence 44555 7999999999998888888876 5999999999985
|
| >d1vc4a_ c.1.2.4 (A:) Indole-3-glycerophosphate synthase, IPGS {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Ribulose-phoshate binding barrel family: Tryptophan biosynthesis enzymes domain: Indole-3-glycerophosphate synthase, IPGS species: Thermus thermophilus [TaxId: 274]
Probab=97.99 E-value=0.00012 Score=65.38 Aligned_cols=163 Identities=22% Similarity=0.254 Sum_probs=96.7
Q ss_pred HHHHHHHHcCCcEEEEecCCCCCCchhHHhh---hhcCCCCccccccccccccCcccccc--ch-h---hHHHhhhccCc
Q 017718 140 QLVRRAERAGFKAIALTVDTPRLGRREADIK---NRFTLPPFLTLKNFQGLDLGKMDEAN--DS-G---LAAYVAGQIDR 210 (367)
Q Consensus 140 ~~l~ra~~~G~~ai~itvd~p~~g~r~~~~~---~~~~~p~~~~~~~~~~~~~~~~~~~~--~~-~---~~~~~~~~~d~ 210 (367)
++++.-++.|+.+|-|-.|....+-...|++ +...+|- -.+.+- ++...+.+.. ++ + ....+ +.
T Consensus 69 ~~A~~y~~~GA~aiSVLTe~~~F~Gs~~dl~~v~~~~~iPv--LrKDFI-id~~QI~ea~~~GADaVLLIaall----~~ 141 (254)
T d1vc4a_ 69 EAALAYARGGARAVSVLTEPHRFGGSLLDLKRVREAVDLPL--LRKDFV-VDPFMLEEARAFGASAALLIVALL----GE 141 (254)
T ss_dssp HHHHHHHHTTCSEEEEECCCSSSCCCHHHHHHHHHHCCSCE--EEESCC-CSHHHHHHHHHTTCSEEEEEHHHH----GG
T ss_pred HHHHHHHhcCCceEEEEcCcccccccHHHHHHHHHHcCCCc--ccCCcc-ccHHHHHHHHhccchHHHHHHHHH----HH
Confidence 3566778899999999999877666555554 3333341 111110 0000000000 00 0 01111 11
Q ss_pred cc-cHHHHHhhcCCCEEEEecCCHHHHHHHHHcCCcEEEEcCCCCCCCCCccchHHHHHHHHHHhcCCCcEEEecCCCCH
Q 017718 211 SL-SWKWLQTITKLPILVKGVLTAEDARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRG 289 (367)
Q Consensus 211 ~~-~~~~l~~~~~~Pv~vK~v~~~~~a~~~~~~G~d~i~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~~~via~GGI~~~ 289 (367)
.+ ..-......++-++| .+-+.++++++.++|++.|-|-|.-=+++.....+...|.++....+.++.+|+.+||.+.
T Consensus 142 ~l~~l~~~A~~lgl~~LV-Evh~~~El~~a~~~~a~iIGINnRdL~t~~vd~~~~~~l~~~i~~~~~~~i~IsESGI~~~ 220 (254)
T d1vc4a_ 142 LTGAYLEEARRLGLEALV-EVHTERELEIALEAGAEVLGINNRDLATLHINLETAPRLGRLARKRGFGGVLVAESGYSRK 220 (254)
T ss_dssp GHHHHHHHHHHHTCEEEE-EECSHHHHHHHHHHTCSEEEEESBCTTTCCBCTTHHHHHHHHHHHTTCCSEEEEESCCCSH
T ss_pred HHHHHHHHHHHhCCceEE-EeccHHHHhhhhcCCCCEEEEeccchhhhhcchHHHHHhhhcccccCCCCEEEEccCCCCH
Confidence 11 111222335666655 4678888999999999988887643334444555555555555444446889999999999
Q ss_pred HHHHHHHHcCCCEEEechHHHH
Q 017718 290 TDVFKALALGASGIFIGRPVVY 311 (367)
Q Consensus 290 ~dv~kal~lGAd~V~ig~~~l~ 311 (367)
+|+ +.+..|+|+|.||+.+|.
T Consensus 221 ~dv-~~l~~g~davLIGesLm~ 241 (254)
T d1vc4a_ 221 EEL-KALEGLFDAVLIGTSLMR 241 (254)
T ss_dssp HHH-HTTTTTCSEEEECHHHHT
T ss_pred HHH-HHHHcCCCEEEEChhhcC
Confidence 997 456789999999999985
|
| >d1mzha_ c.1.10.1 (A:) Deoxyribose-phosphate aldolase DeoC {Aquifex aeolicus [TaxId: 63363]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Aldolase family: Class I aldolase domain: Deoxyribose-phosphate aldolase DeoC species: Aquifex aeolicus [TaxId: 63363]
Probab=97.97 E-value=0.00013 Score=64.02 Aligned_cols=87 Identities=25% Similarity=0.292 Sum_probs=63.1
Q ss_pred HHHhhcCCCEEEEec-----CCHHH----HHHHHHcCCcEEEEcCCCCCCCCCccchHHHHHHHHHHhcCCCcEEEecCC
Q 017718 216 WLQTITKLPILVKGV-----LTAED----ARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGV 286 (367)
Q Consensus 216 ~l~~~~~~Pv~vK~v-----~~~~~----a~~~~~~G~d~i~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~~~via~GGI 286 (367)
.+++..+.+ ++|.+ ++.++ ++.+.++|+|+|..|. | +..+..+.+.+..+++.+++++.|=++|||
T Consensus 110 ~v~~~~~~~-~lKVIlEt~~L~~~ei~~a~~~a~~aGadfiKTST-G---~~~~gat~e~v~~m~~~~~~~~~iKasGGI 184 (225)
T d1mzha_ 110 EIFRETPSA-VHKVIVETPYLNEEEIKKAVEICIEAGADFIKTST-G---FAPRGTTLEEVRLIKSSAKGRIKVKASGGI 184 (225)
T ss_dssp HHHHTCTTS-EEEEECCGGGCCHHHHHHHHHHHHHHTCSEEECCC-S---CSSSCCCHHHHHHHHHHHTTSSEEEEESSC
T ss_pred HHHHhccCc-eeehhhhhccCCHHHHHHHHHHHHHcccceEeecC-C---CCCCCCCHHHHHHHHHHhCCCceEECcCCC
Confidence 444444433 46776 33333 6788999999999864 2 112234566666677777778999999999
Q ss_pred CCHHHHHHHHHcCCCEEEech
Q 017718 287 RRGTDVFKALALGASGIFIGR 307 (367)
Q Consensus 287 ~~~~dv~kal~lGAd~V~ig~ 307 (367)
++.+|+.+++.+||+-++-.+
T Consensus 185 rt~~~a~~~i~~Ga~RiGtSs 205 (225)
T d1mzha_ 185 RDLETAISMIEAGADRIGTSS 205 (225)
T ss_dssp CSHHHHHHHHHTTCSEEEESC
T ss_pred CCHHHHHHHHHhchhheecCc
Confidence 999999999999999876554
|
| >d1xi3a_ c.1.3.1 (A:) Thiamin phosphate synthase {Archaeon (Pyrococcus furiosus) [TaxId: 2261]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Thiamin phosphate synthase family: Thiamin phosphate synthase domain: Thiamin phosphate synthase species: Archaeon (Pyrococcus furiosus) [TaxId: 2261]
Probab=97.93 E-value=3.8e-05 Score=66.63 Aligned_cols=84 Identities=24% Similarity=0.269 Sum_probs=65.4
Q ss_pred EEEEecCCHHHHHHHHHcCCcEEEEcCCCCC--CCCCccchHHHHHHHHHHhcCCCcEEEecCCCCHHHHHHHHHcCCCE
Q 017718 225 ILVKGVLTAEDARIAVQAGAAGIIVSNHGAR--QLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASG 302 (367)
Q Consensus 225 v~vK~v~~~~~a~~~~~~G~d~i~vs~~gg~--~~~~~~~~~~~l~~i~~~~~~~~~via~GGI~~~~dv~kal~lGAd~ 302 (367)
++.--+.+.+++..+.+.|+|++.++--.-+ ..+..+..++.+.++.+.. ++||++-||| +.+++.+++.+||++
T Consensus 101 iig~s~h~~~e~~~a~~~g~DYi~~gpvf~T~tk~~~~~~g~~~l~~~~~~~--~~Pv~AiGGI-~~~ni~~~~~~Ga~g 177 (206)
T d1xi3a_ 101 IIGASVYSLEEALEAEKKGADYLGAGSVFPTKTKEDARVIGLEGLRKIVESV--KIPVVAIGGI-NKDNAREVLKTGVDG 177 (206)
T ss_dssp EEEEEESSHHHHHHHHHHTCSEEEEECSSCC----CCCCCHHHHHHHHHHHC--SSCEEEESSC-CTTTHHHHHTTTCSE
T ss_pred ccccccCCHHHHHHHHhcCCCEEEeccccccccccccccccHHHHHHHHHhc--CCCEEEECCC-CHHHHHHHHHhCCCE
Confidence 4444457889999999999999999742221 1223345788888888766 8999999999 677899999999999
Q ss_pred EEechHHHH
Q 017718 303 IFIGRPVVY 311 (367)
Q Consensus 303 V~ig~~~l~ 311 (367)
|.+.+.++-
T Consensus 178 vAvis~I~~ 186 (206)
T d1xi3a_ 178 IAVISAVMG 186 (206)
T ss_dssp EEESHHHHT
T ss_pred EEEhHHHHC
Confidence 999998864
|
| >d1ub3a_ c.1.10.1 (A:) Deoxyribose-phosphate aldolase DeoC {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Aldolase family: Class I aldolase domain: Deoxyribose-phosphate aldolase DeoC species: Thermus thermophilus [TaxId: 274]
Probab=97.88 E-value=0.00022 Score=62.04 Aligned_cols=88 Identities=24% Similarity=0.329 Sum_probs=64.0
Q ss_pred HHHhhcCCCEEEEec-----CCHHH----HHHHHHcCCcEEEEcCCCCCCCCCccchHHHHHHHHHHhcCCCcEEEecCC
Q 017718 216 WLQTITKLPILVKGV-----LTAED----ARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGV 286 (367)
Q Consensus 216 ~l~~~~~~Pv~vK~v-----~~~~~----a~~~~~~G~d~i~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~~~via~GGI 286 (367)
.+++..+. .++|.+ ++.++ ++.+.++|+|+|..|. | +..+..+.+.+..+++.+++++.|=++|||
T Consensus 110 ~v~~~~~~-~~lKVIlEt~~L~~~ei~~a~~~a~~aGadfiKTST-G---~~~~gat~e~v~~m~~~~~~~~~iKasGGI 184 (211)
T d1ub3a_ 110 AVREAVPQ-AVLKVILETGYFSPEEIARLAEAAIRGGADFLKTST-G---FGPRGASLEDVALLVRVAQGRAQVKAAGGI 184 (211)
T ss_dssp HHHHHSTT-SEEEEECCGGGSCHHHHHHHHHHHHHHTCSEEECCC-S---SSSCCCCHHHHHHHHHHHTTSSEEEEESSC
T ss_pred HHHHhccC-CceEEEeccccCCHHHHHHHHHHHHHhccceEEecC-C---CCCCCCCHHHHHHHHHHhCCCceEECcCCC
Confidence 55555543 457877 34433 5778999999999874 3 112234566666666677778999999999
Q ss_pred CCHHHHHHHHHcCCCEEEechH
Q 017718 287 RRGTDVFKALALGASGIFIGRP 308 (367)
Q Consensus 287 ~~~~dv~kal~lGAd~V~ig~~ 308 (367)
||.+++.+++.+||+-++-.++
T Consensus 185 rt~~~a~~~l~aGa~riGtSs~ 206 (211)
T d1ub3a_ 185 RDRETALRMLKAGASRLGTSSG 206 (211)
T ss_dssp CSHHHHHHHHHTTCSEEEETTH
T ss_pred CCHHHHHHHHHHhhhHhccCcH
Confidence 9999999999999998776553
|
| >d1o0ya_ c.1.10.1 (A:) Deoxyribose-phosphate aldolase DeoC {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Aldolase family: Class I aldolase domain: Deoxyribose-phosphate aldolase DeoC species: Thermotoga maritima [TaxId: 2336]
Probab=97.82 E-value=0.00026 Score=63.08 Aligned_cols=87 Identities=25% Similarity=0.207 Sum_probs=62.8
Q ss_pred HHHhhcCCCEEEEec-----CCHHH----HHHHHHcCCcEEEEcCCCCCCCCCccchHHHHHHHHHHhcCCCcEEEecCC
Q 017718 216 WLQTITKLPILVKGV-----LTAED----ARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGV 286 (367)
Q Consensus 216 ~l~~~~~~Pv~vK~v-----~~~~~----a~~~~~~G~d~i~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~~~via~GGI 286 (367)
.+++..+ ..++|.+ ++.++ ++.+.++|+|+|..|. | +..+..+.+.+..+++.+++++.|=++|||
T Consensus 143 ~v~~~~~-~~~lKVIlEt~~L~~~e~~~a~~ia~~aGadfvKTST-G---f~~~gat~e~V~~m~~~~~~~~giKasGGI 217 (251)
T d1o0ya_ 143 SVVESVK-GKVVKVIIETCYLDTEEKIAACVISKLAGAHFVKTST-G---FGTGGATAEDVHLMKWIVGDEMGVKASGGI 217 (251)
T ss_dssp HHHHHTT-TSEEEEECCGGGCCHHHHHHHHHHHHHTTCSEEECCC-S---SSSCCCCHHHHHHHHHHHCTTSEEEEESSC
T ss_pred HHHHHhc-ccceeeeecccccCcHHHHHHHHHHHHhCcceeeccC-C---CCCCCcCHHHHHHHHHHhCCCceEeccCCc
Confidence 4555443 4467887 33332 6778999999998864 2 222345666666666667778999999999
Q ss_pred CCHHHHHHHHHcCCCEEEech
Q 017718 287 RRGTDVFKALALGASGIFIGR 307 (367)
Q Consensus 287 ~~~~dv~kal~lGAd~V~ig~ 307 (367)
+|.+|+.+++.+||+.++-.+
T Consensus 218 rt~~~a~~~i~aGa~riGtSs 238 (251)
T d1o0ya_ 218 RTFEDAVKMIMYGADRIGTSS 238 (251)
T ss_dssp CSHHHHHHHHHTTCSEEEESC
T ss_pred CCHHHHHHHHHHhhHHhCCCc
Confidence 999999999999999875443
|
| >d2tpsa_ c.1.3.1 (A:) Thiamin phosphate synthase {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Thiamin phosphate synthase family: Thiamin phosphate synthase domain: Thiamin phosphate synthase species: Bacillus subtilis [TaxId: 1423]
Probab=97.65 E-value=0.00022 Score=62.55 Aligned_cols=95 Identities=18% Similarity=0.142 Sum_probs=66.7
Q ss_pred HHHHhhcCCCEEEEecCCHHHHHHHHHcCCcEEEEcCCCCCC--CCCcc-chHHHHHHHHHHhcCCCcEEEecCCCCHHH
Q 017718 215 KWLQTITKLPILVKGVLTAEDARIAVQAGAAGIIVSNHGARQ--LDYVP-ATIMALEEVVKATQGRIPVFLDGGVRRGTD 291 (367)
Q Consensus 215 ~~l~~~~~~Pv~vK~v~~~~~a~~~~~~G~d~i~vs~~gg~~--~~~~~-~~~~~l~~i~~~~~~~~~via~GGI~~~~d 291 (367)
..+|+..+-.++.--+-+.++++.+.+.|+|+|.++.-..+. .+..+ ...+.+..+.+. ..++||++-||| +.++
T Consensus 107 ~~~r~~~~~~iig~S~h~~~e~~~a~~~g~DYi~~gpvf~T~sK~~~~~~~~~~~~~~~~~~-~~~~Pv~AiGGI-~~~n 184 (226)
T d2tpsa_ 107 KEVRAAIGDMILGVSAHTMSEVKQAEEDGADYVGLGPIYPTETKKDTRAVQGVSLIEAVRRQ-GISIPIVGIGGI-TIDN 184 (226)
T ss_dssp HHHHHHHTTSEEEEEECSHHHHHHHHHHTCSEEEECCSSCCCSSSSCCCCCTTHHHHHHHHT-TCCCCEEEESSC-CTTT
T ss_pred hhhhhcccceeeeeeccchHHHHHHHhCcCCeEEEecccccccccccccccccchhHHHHHh-cCCCCEEEecCC-CHHH
Confidence 345555554444444578999999999999999997532221 12222 234555555432 137999999999 8899
Q ss_pred HHHHHHcCCCEEEechHHHH
Q 017718 292 VFKALALGASGIFIGRPVVY 311 (367)
Q Consensus 292 v~kal~lGAd~V~ig~~~l~ 311 (367)
+.+++.+||++|.+.+.++-
T Consensus 185 i~~l~~~Ga~giAvis~I~~ 204 (226)
T d2tpsa_ 185 AAPVIQAGADGVSMISAISQ 204 (226)
T ss_dssp SHHHHHTTCSEEEESHHHHT
T ss_pred HHHHHHhCCCEEEEhHHhhc
Confidence 99999999999999998864
|
| >d1i4na_ c.1.2.4 (A:) Indole-3-glycerophosphate synthase, IPGS {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Ribulose-phoshate binding barrel family: Tryptophan biosynthesis enzymes domain: Indole-3-glycerophosphate synthase, IPGS species: Thermotoga maritima [TaxId: 2336]
Probab=97.65 E-value=0.00027 Score=62.79 Aligned_cols=86 Identities=13% Similarity=0.179 Sum_probs=58.9
Q ss_pred cCCCEEEEecCCHHHHHHHHH-cCCcEEEEcCCCCCCCCCccchHHHHHHHHHHhcCCCcEEEecCCCCHHHHHHHHHcC
Q 017718 221 TKLPILVKGVLTAEDARIAVQ-AGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALG 299 (367)
Q Consensus 221 ~~~Pv~vK~v~~~~~a~~~~~-~G~d~i~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~~~via~GGI~~~~dv~kal~lG 299 (367)
.++-++| .+.+.+++.++.+ .|++.|-|-|.--.++...+.+. .++...++.+..+|+.+||++++|+. .+..|
T Consensus 149 lgle~Lv-Evh~~~El~~al~~~~a~iiGINnRdL~t~~vd~~~~---~~L~~~ip~~~~~IaESGI~~~~d~~-~l~~G 223 (251)
T d1i4na_ 149 LGMDSLV-EVHSREDLEKVFSVIRPKIIGINTRDLDTFEIKKNVL---WELLPLVPDDTVVVAESGIKDPRELK-DLRGK 223 (251)
T ss_dssp TTCEEEE-EECSHHHHHHHHTTCCCSEEEEECBCTTTCCBCTTHH---HHHGGGSCTTSEEEEESCCCCGGGHH-HHTTT
T ss_pred hCCeeec-ccCCHHHHHHHhcccccceeeeeecchhccchhhhHH---HHHHhhCCCCCEEEEcCCCCCHHHHH-HHHhC
Confidence 3555555 3667777777764 46777767554333333333332 33344456678999999999999985 56789
Q ss_pred CCEEEechHHHH
Q 017718 300 ASGIFIGRPVVY 311 (367)
Q Consensus 300 Ad~V~ig~~~l~ 311 (367)
+|+|.||+.+|.
T Consensus 224 ~davLIG~sLm~ 235 (251)
T d1i4na_ 224 VNAVLVGTSIMK 235 (251)
T ss_dssp CSEEEECHHHHH
T ss_pred CCEEEEChHHhC
Confidence 999999999986
|
| >d1wbha1 c.1.10.1 (A:1-213) KDPG aldolase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Aldolase family: Class I aldolase domain: KDPG aldolase species: Escherichia coli [TaxId: 562]
Probab=97.64 E-value=0.00029 Score=61.28 Aligned_cols=180 Identities=16% Similarity=0.166 Sum_probs=110.0
Q ss_pred CCHHHHHhhCCCceEEEEeecCCHHHHHHHHHHHHHcCCcEEEEecCCCCCCchhHHhhhhcCCCCccccccccccccCc
Q 017718 112 SSVEEVASTGPGIRFFQLYVYKDRNVVAQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLTLKNFQGLDLGK 191 (367)
Q Consensus 112 ~~~e~i~~~~~~~~~~QLy~~~d~~~~~~~l~ra~~~G~~ai~itvd~p~~g~r~~~~~~~~~~p~~~~~~~~~~~~~~~ 191 (367)
.+.+++....| .+-+....|.+...++++.+.+.|++.+-||+++|..-..-..++..| |. +... ...+....
T Consensus 6 ~~~~~~l~~~~---iipvlr~~~~~~a~~~~~al~~~Gi~~iEitl~tp~a~~~I~~l~~~~--p~-~~vG-aGTV~~~~ 78 (213)
T d1wbha1 6 TSAESILTTGP---VVPVIVVKKLEHAVPMAKALVAGGVRVLNVTLRTECAVDAIRAIAKEV--PE-AIVG-AGTVLNPQ 78 (213)
T ss_dssp SCHHHHHHSCS---EEEEECCSSGGGHHHHHHHHHHTTCCEEEEESCSTTHHHHHHHHHHHC--TT-SEEE-EESCCSHH
T ss_pred cCHHHHHHhCC---EEEEEECCCHHHHHHHHHHHHHCCCCEEEEeCCChhHHHHHHHHHHHC--CC-Ceee-ccccccHH
Confidence 45677766654 233444678888889999999999999999999987433334555544 32 1110 00000000
Q ss_pred cccccchhhHHHhhhccCccccHH--HHHhhcCCCEEEEecCCHHHHHHHHHcCCcEEEEcCCCCCCCCCccchHHHHHH
Q 017718 192 MDEANDSGLAAYVAGQIDRSLSWK--WLQTITKLPILVKGVLTAEDARIAVQAGAAGIIVSNHGARQLDYVPATIMALEE 269 (367)
Q Consensus 192 ~~~~~~~~~~~~~~~~~d~~~~~~--~l~~~~~~Pv~vK~v~~~~~a~~~~~~G~d~i~vs~~gg~~~~~~~~~~~~l~~ 269 (367)
..+.......+++. .|.++-+ ......++|++ =+++++.++..+.++|++.+-+.-.. .......++.
T Consensus 79 ~~~~a~~aGa~Fiv---SP~~~~~v~~~a~~~~i~~i-PGv~TpsEi~~A~~~G~~~vKlFPA~------~~Gg~~~lka 148 (213)
T d1wbha1 79 QLAEVTEAGAQFAI---SPGLTEPLLKAATEGTIPLI-PGISTVSELMLGMDYGLKEFKFFPAE------ANGGVKALQA 148 (213)
T ss_dssp HHHHHHHHTCSCEE---ESSCCHHHHHHHHHSSSCEE-EEESSHHHHHHHHHTTCCEEEETTTT------TTTHHHHHHH
T ss_pred HHHHHHHCCCcEEE---CCCCCHHHHHHHHhcCCCcc-CCcCCHHHHHHHHHCCCCEEEeccch------hcChHHHHHH
Confidence 00000000011111 1223322 22234578885 47899999999999999999995321 1112344555
Q ss_pred HHHHhcCCCcEEEecCCCCHHHHHHHHHcCCCEEEechHHH
Q 017718 270 VVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFIGRPVV 310 (367)
Q Consensus 270 i~~~~~~~~~via~GGI~~~~dv~kal~lGAd~V~ig~~~l 310 (367)
+..-+ .+++++..|||. .+++.+.+.+|+.++.+|+.++
T Consensus 149 l~~p~-p~~~~~ptGGV~-~~n~~~yl~~g~v~~~~Gs~l~ 187 (213)
T d1wbha1 149 IAGPF-SQVRFCPTGGIS-PANYRDYLALKSVLCIGGSWLV 187 (213)
T ss_dssp HHTTC-TTCEEEEBSSCC-TTTHHHHHTSTTBSCEEEGGGS
T ss_pred hcCcc-cCCceeeeCCCC-HHHHHHHHhCCCEEEEEChhhC
Confidence 54433 379999999997 5799999999999999998654
|
| >d1piia2 c.1.2.4 (A:1-254) Indole-3-glycerophosphate synthase, IPGS {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Ribulose-phoshate binding barrel family: Tryptophan biosynthesis enzymes domain: Indole-3-glycerophosphate synthase, IPGS species: Escherichia coli [TaxId: 562]
Probab=97.61 E-value=0.00054 Score=60.88 Aligned_cols=86 Identities=20% Similarity=0.282 Sum_probs=59.0
Q ss_pred cCCCEEEEecCCHHHHHHHHHcCCcEEEEcCCCCCCCCCccchHHHHHHHHHHhcCCCcEEEecCCCCHHHHHHHHHcCC
Q 017718 221 TKLPILVKGVLTAEDARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGA 300 (367)
Q Consensus 221 ~~~Pv~vK~v~~~~~a~~~~~~G~d~i~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~~~via~GGI~~~~dv~kal~lGA 300 (367)
.++-++| .+-+.++++++.++|++.|-+-|.- +..-....+...++...++.++.+++.+||++.+|+.. +..|+
T Consensus 156 lgl~~LV-Evh~~~El~~a~~~~a~iIGINnRn---L~tf~vd~~~t~~L~~~ip~~~~~VsESGI~~~~d~~~-l~~g~ 230 (254)
T d1piia2 156 LEMGVLT-EVSNEEEQERAIALGAKVVGINNRD---LRDLSIDLNRTRELAPKLGHNVTVISESGINTYAQVRE-LSHFA 230 (254)
T ss_dssp TTCEEEE-EECSHHHHHHHHHTTCSEEEEESEE---TTTTEECTHHHHHHHHHHCTTSEEEEESCCCCHHHHHH-HTTTC
T ss_pred HhhhHHH-hhccHHHHHHHHhhcccccCccccc---hhhhhhhhHHHHHHHHhCCCCCEEEEcCCCCCHHHHHH-HHcCC
Confidence 4554444 4567777777778887777665522 22222223333344455666888999999999999865 57899
Q ss_pred CEEEechHHHH
Q 017718 301 SGIFIGRPVVY 311 (367)
Q Consensus 301 d~V~ig~~~l~ 311 (367)
|+|.||+.+|.
T Consensus 231 davLiGeslm~ 241 (254)
T d1piia2 231 NGFLIGSALMA 241 (254)
T ss_dssp SEEEECHHHHT
T ss_pred CEEEEChHHhC
Confidence 99999999985
|
| >d1vhca_ c.1.10.1 (A:) Hypothetical protein HI0047 {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Aldolase family: Class I aldolase domain: Hypothetical protein HI0047 species: Haemophilus influenzae [TaxId: 727]
Probab=97.58 E-value=0.00028 Score=61.38 Aligned_cols=169 Identities=14% Similarity=0.120 Sum_probs=101.0
Q ss_pred EEEEeecCCHHHHHHHHHHHHHcCCcEEEEecCCCCCCchhHHhhhhcCCCCccccccccccccCccccccchhhHHHhh
Q 017718 126 FFQLYVYKDRNVVAQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLTLKNFQGLDLGKMDEANDSGLAAYVA 205 (367)
Q Consensus 126 ~~QLy~~~d~~~~~~~l~ra~~~G~~ai~itvd~p~~g~r~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 205 (367)
.+-+....+.+...++++.+.+.|++.+-||+++|..-.--+.++..+ |. +... ..........+........++.
T Consensus 16 iipvlr~~~~~~~~~~~~al~~~Gi~~iEitl~~~~a~~~I~~l~~~~--p~-~~vG-aGTV~~~~~~~~a~~aGa~Fiv 91 (212)
T d1vhca_ 16 IVPVIALDNADDILPLADTLAKNGLSVAEITFRSEAAADAIRLLRANR--PD-FLIA-AGTVLTAEQVVLAKSSGADFVV 91 (212)
T ss_dssp EEEEECCSSGGGHHHHHHHHHHTTCCEEEEETTSTTHHHHHHHHHHHC--TT-CEEE-EESCCSHHHHHHHHHHTCSEEE
T ss_pred EEEEEeCCCHHHHHHHHHHHHHCCCCEEEEeCCChhHHHHHHHHHhcC--CC-ceEe-eeecccHHHHHHHHhhCCcEEE
Confidence 344444667777888888888999999999999886432223344443 32 1110 0000000000000000011111
Q ss_pred hccCccccHH--HHHhhcCCCEEEEecCCHHHHHHHHHcCCcEEEEcCCCCCCCCCccchHHHHHHHHHHhcCCCcEEEe
Q 017718 206 GQIDRSLSWK--WLQTITKLPILVKGVLTAEDARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLD 283 (367)
Q Consensus 206 ~~~d~~~~~~--~l~~~~~~Pv~vK~v~~~~~a~~~~~~G~d~i~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~~~via~ 283 (367)
.|.++-+ ......++|++ =+++++.++..+.++|++.+-+.-.+ ..+|+ ..|+.+..-++ +++++..
T Consensus 92 ---SP~~~~~v~~~a~~~~i~~i-PGv~TpsEi~~A~~~G~~~vK~FPA~---~~gG~---~~lkal~~p~p-~~~~~pt 160 (212)
T d1vhca_ 92 ---TPGLNPKIVKLCQDLNFPIT-PGVNNPMAIEIALEMGISAVKFFPAE---ASGGV---KMIKALLGPYA-QLQIMPT 160 (212)
T ss_dssp ---CSSCCHHHHHHHHHTTCCEE-CEECSHHHHHHHHHTTCCEEEETTTT---TTTHH---HHHHHHHTTTT-TCEEEEB
T ss_pred ---CCCCCHHHHHHHHhcCCCcc-CCcCCHHHHHHHHHCCCCEEEEcccc---ccchH---HHHHHHhcccc-CCeEEec
Confidence 2333322 33334578885 47899999999999999999996422 11233 34444443333 7999999
Q ss_pred cCCCCHHHHHHHHHcCCCEEEechHHH
Q 017718 284 GGVRRGTDVFKALALGASGIFIGRPVV 310 (367)
Q Consensus 284 GGI~~~~dv~kal~lGAd~V~ig~~~l 310 (367)
|||. .+++.+.|.+|+.++++|+.++
T Consensus 161 GGV~-~~N~~~yl~~g~v~~~~Gs~l~ 186 (212)
T d1vhca_ 161 GGIG-LHNIRDYLAIPNIVACGGSWFV 186 (212)
T ss_dssp SSCC-TTTHHHHHTSTTBCCEEECGGG
T ss_pred CCCC-HHHHHHHHhCCCEEEEEChhhC
Confidence 9996 5889999999999999998664
|
| >d1ka9f_ c.1.2.1 (F:) Cyclase subunit (or domain) of imidazoleglycerolphosphate synthase HisF {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Ribulose-phoshate binding barrel family: Histidine biosynthesis enzymes domain: Cyclase subunit (or domain) of imidazoleglycerolphosphate synthase HisF species: Thermus thermophilus [TaxId: 274]
Probab=97.57 E-value=0.0002 Score=63.88 Aligned_cols=74 Identities=22% Similarity=0.281 Sum_probs=60.5
Q ss_pred HHHHHHHHcCCcEEEEcCC--CCCCCCCccchHHHHHHHHHHhcCCCcEEEecCCCCHHHHHHHHHcCCCEEEechHHHH
Q 017718 234 EDARIAVQAGAAGIIVSNH--GARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFIGRPVVY 311 (367)
Q Consensus 234 ~~a~~~~~~G~d~i~vs~~--gg~~~~~~~~~~~~l~~i~~~~~~~~~via~GGI~~~~dv~kal~lGAd~V~ig~~~l~ 311 (367)
+..+.+.+.|+..|++.+- -|+ ..| +.++.+.++.+.. ++|+|++||+++.+|+.+++..|+++|.+|++|.+
T Consensus 155 ~~~~~~~~~g~~eii~tdi~~dG~--~~G-~d~~l~~~i~~~~--~~pii~~GGv~~~~dl~~l~~~g~~gviig~al~~ 229 (251)
T d1ka9f_ 155 EWAVKGVELGAGEILLTSMDRDGT--KEG-YDLRLTRMVAEAV--GVPVIASGGAGRMEHFLEAFQAGAEAALAASVFHF 229 (251)
T ss_dssp HHHHHHHHHTCCEEEEEETTTTTT--CSC-CCHHHHHHHHHHC--SSCEEEESCCCSHHHHHHHHHTTCSEEEESHHHHT
T ss_pred HHHHHHHhcCCCEEEEEeecccCc--cCC-cchhHHHHHHhhc--ceeEEEecCCCCHHHHHHHHHCCCCEEEEhHHHHc
Confidence 5588899999999998651 121 122 3578888887776 79999999999999999999999999999998876
Q ss_pred H
Q 017718 312 S 312 (367)
Q Consensus 312 ~ 312 (367)
+
T Consensus 230 g 230 (251)
T d1ka9f_ 230 G 230 (251)
T ss_dssp T
T ss_pred C
Confidence 3
|
| >d1znna1 c.1.2.6 (A:18-271) Pyridoxal biosynthesis lyase PdxS {Bacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Ribulose-phoshate binding barrel family: PdxS-like domain: Pyridoxal biosynthesis lyase PdxS species: Bacillus stearothermophilus [TaxId: 1422]
Probab=97.56 E-value=0.00022 Score=62.28 Aligned_cols=90 Identities=21% Similarity=0.348 Sum_probs=62.5
Q ss_pred cCCCEEEEecCCHHHHHHHHHcCCcEEEEcCCCCCC---------------------CC--Cc-------cchHHHHHHH
Q 017718 221 TKLPILVKGVLTAEDARIAVQAGAAGIIVSNHGARQ---------------------LD--YV-------PATIMALEEV 270 (367)
Q Consensus 221 ~~~Pv~vK~v~~~~~a~~~~~~G~d~i~vs~~gg~~---------------------~~--~~-------~~~~~~l~~i 270 (367)
+++|++. +.-+.-.+.+=...|+.-|.--|.-|+. ++ .. ....+.+.++
T Consensus 104 fkvpfVc-g~r~Lgealrri~EgAamIrtkGeagtgnvveav~h~R~i~~~i~~~~~m~~~el~~~ak~lg~p~~l~~~v 182 (254)
T d1znna1 104 FTVPFVC-GCRDLGEAARRIAEGASMLRTKGEPGTGNIVEAVRHMRKVNAQIRKVVNMSEDELVAEAKQLGAPVEVLREI 182 (254)
T ss_dssp CSSCEEE-EESSHHHHHHHHHTTCSEEEECCCTTSCCCHHHHHHHHHHHHHHHHHHHSCGGGHHHHHHHHTCCHHHHHHH
T ss_pred eeeeeeC-CCCccchhHHHHHHHHHHHHhCCccCCCcHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHhhCCchHHHHHH
Confidence 5889854 5556555444455688888876643331 11 00 1134556666
Q ss_pred HHHhcCCCcEEEecCCCCHHHHHHHHHcCCCEEEechHHHH
Q 017718 271 VKATQGRIPVFLDGGVRRGTDVFKALALGASGIFIGRPVVY 311 (367)
Q Consensus 271 ~~~~~~~~~via~GGI~~~~dv~kal~lGAd~V~ig~~~l~ 311 (367)
.+.-+-.+|+|++|||.++.|+..++.||||+|++|+.+..
T Consensus 183 ~~~g~l~v~~~~~~Gi~tpadaa~~MelG~dgV~v~s~I~~ 223 (254)
T d1znna1 183 KRLGRLPVVNFAAGGVTTPADAALMMHLGADGVFVGSGIFK 223 (254)
T ss_dssp HHHTSCSSEEEEESSCCSHHHHHHHHHTTCSEEEECGGGGG
T ss_pred HHhCCCCceEEecCCCCChhhHHHHHHcCCCEEEEcchhhc
Confidence 65433479999999999999999999999999999997754
|
| >d1q6oa_ c.1.2.3 (A:) 3-keto-L-gulonate 6-phosphate decarboxylase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Ribulose-phoshate binding barrel family: Decarboxylase domain: 3-keto-L-gulonate 6-phosphate decarboxylase species: Escherichia coli [TaxId: 562]
Probab=97.50 E-value=0.0007 Score=57.43 Aligned_cols=97 Identities=13% Similarity=0.088 Sum_probs=62.3
Q ss_pred CCHHHHHHHHHcCCcEEEEcCCCCCCCCCccchHHHHHHHHHHhcCCCcEEEecCCCCHHHHHHHHHcCCCEEEechHHH
Q 017718 231 LTAEDARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFIGRPVV 310 (367)
Q Consensus 231 ~~~~~a~~~~~~G~d~i~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~~~via~GGI~~~~dv~kal~lGAd~V~ig~~~l 310 (367)
.+.+.+..+.+.+++.+++......+..+.......+..+++..+..+++..+||++ ++++.+++.+|||.+.+||++.
T Consensus 115 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~i~~~~~~~~~i~~~gGi~-~~~~~~~~~~Gad~iVVGr~I~ 193 (213)
T d1q6oa_ 115 WTWEQAQQWRDAGIGQVVYHRSRDAQAAGVAWGEADITAIKRLSDMGFKVTVTGGLA-LEDLPLFKGIPIHVFIAGRSIR 193 (213)
T ss_dssp CCHHHHHHHHHTTCCEEEEECCHHHHHTTCCCCHHHHHHHHHHHHTTCEEEEESSCC-GGGGGGGTTSCCSEEEESHHHH
T ss_pred CCHHHHHHHHHhHHHHHHHHHhcccCcCCeeCCHHHHHHHHHhhccCceEecCCCcC-cCCHHHHHHcCCCEEEEChhhc
Confidence 567888889999999888742110011111222334444444444478899999875 7889999999999999999986
Q ss_pred HHhhccChHHHHHHHHHHHHHHHH
Q 017718 311 YSLAAEGEKGVRRVLEMLREEFEL 334 (367)
Q Consensus 311 ~~l~~~G~~~v~~~i~~l~~el~~ 334 (367)
.+ .- ..+.++.++++++.
T Consensus 194 ~a---~d---p~~a~~~~~~~i~~ 211 (213)
T d1q6oa_ 194 DA---AS---PVEAARQFKRSIAE 211 (213)
T ss_dssp TS---SC---HHHHHHHHHHHHHH
T ss_pred CC---CC---HHHHHHHHHHHHHH
Confidence 42 12 22455566666543
|
| >d1h5ya_ c.1.2.1 (A:) Cyclase subunit (or domain) of imidazoleglycerolphosphate synthase HisF {Archaeon Pyrobaculum aerophilum [TaxId: 13773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Ribulose-phoshate binding barrel family: Histidine biosynthesis enzymes domain: Cyclase subunit (or domain) of imidazoleglycerolphosphate synthase HisF species: Archaeon Pyrobaculum aerophilum [TaxId: 13773]
Probab=97.48 E-value=0.00026 Score=63.17 Aligned_cols=74 Identities=22% Similarity=0.358 Sum_probs=59.9
Q ss_pred HHHHHHHHcCCcEEEEcC--CCCCCCCCccchHHHHHHHHHHhcCCCcEEEecCCCCHHHHHHHHHcCCCEEEechHHHH
Q 017718 234 EDARIAVQAGAAGIIVSN--HGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFIGRPVVY 311 (367)
Q Consensus 234 ~~a~~~~~~G~d~i~vs~--~gg~~~~~~~~~~~~l~~i~~~~~~~~~via~GGI~~~~dv~kal~lGAd~V~ig~~~l~ 311 (367)
+.++.+.+.|+..|++.+ +-|+ ..| +.++.+.++.+.. ++|++++|||++.+|+.++..+|+++|.+|++|.+
T Consensus 157 ~~~~~~~~~g~~eii~tdI~~dG~--~~G-~d~~~~~~i~~~~--~~pii~~GGv~~~~di~~l~~~g~~gv~~gs~l~~ 231 (252)
T d1h5ya_ 157 KWAKEVEELGAGEILLTSIDRDGT--GLG-YDVELIRRVADSV--RIPVIASGGAGRVEHFYEAAAAGADAVLAASLFHF 231 (252)
T ss_dssp HHHHHHHHHTCSEEEEEETTTTTT--CSC-CCHHHHHHHHHHC--SSCEEEESCCCSHHHHHHHHHTTCSEEEESHHHHT
T ss_pred HHHHHHHhcCCCEEEEEeecccCc--cCC-cCHHHHHHHHHhc--CCCEEEecCCCCHHHHHHHHHCCCCEEEEhhHHHc
Confidence 557889999999999864 1121 112 4567888887766 79999999999999999999999999999999987
Q ss_pred H
Q 017718 312 S 312 (367)
Q Consensus 312 ~ 312 (367)
+
T Consensus 232 ~ 232 (252)
T d1h5ya_ 232 R 232 (252)
T ss_dssp T
T ss_pred C
Confidence 3
|
| >d1vzwa1 c.1.2.1 (A:2-240) Phosphoribosylformimino-5-aminoimidazole carboxamide ribotite isomerase HisA {Streptomyces coelicolor [TaxId: 1902]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Ribulose-phoshate binding barrel family: Histidine biosynthesis enzymes domain: Phosphoribosylformimino-5-aminoimidazole carboxamide ribotite isomerase HisA species: Streptomyces coelicolor [TaxId: 1902]
Probab=97.43 E-value=0.00042 Score=61.12 Aligned_cols=95 Identities=19% Similarity=0.283 Sum_probs=66.9
Q ss_pred HHHhhcCCCEEEEec-CCHHHHHHHHHcCCcEEEEcCC--------------CCCC------------------------
Q 017718 216 WLQTITKLPILVKGV-LTAEDARIAVQAGAAGIIVSNH--------------GARQ------------------------ 256 (367)
Q Consensus 216 ~l~~~~~~Pv~vK~v-~~~~~a~~~~~~G~d~i~vs~~--------------gg~~------------------------ 256 (367)
.+.+...+|+.+-+. .+.++++.+.+.|++.|++... .|.+
T Consensus 68 ~i~~~~~~pi~vGGGIrs~~~~~~ll~~Ga~kVvi~s~~~~~~~~~~~~~~~~g~~~vv~~d~~~~~~~~~g~~~~~~~~ 147 (239)
T d1vzwa1 68 EVAQAMDIKVELSGGIRDDDTLAAALATGCTRVNLGTAALETPEWVAKVIAEHGDKIAVGLDVRGTTLRGRGWTRDGGDL 147 (239)
T ss_dssp HHHHHCSSEEEEESSCCSHHHHHHHHHTTCSEEEECHHHHHCHHHHHHHHHHHGGGEEEEEEEETTEECCSSSCCCCCBH
T ss_pred HHHhhcCcceEeecccccchhhhhhhccccccchhhHHhhhccccchhhhccCCceeeeeeccceeeecCccceeecccc
Confidence 555566778887765 5678888888888888877320 0000
Q ss_pred -------------------C--CC--ccchHHHHHHHHHHhcCCCcEEEecCCCCHHHHHHHHHc---CCCEEEechHHH
Q 017718 257 -------------------L--DY--VPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALAL---GASGIFIGRPVV 310 (367)
Q Consensus 257 -------------------~--~~--~~~~~~~l~~i~~~~~~~~~via~GGI~~~~dv~kal~l---GAd~V~ig~~~l 310 (367)
. ++ .-+.++.+..+.+.. ++|++++|||++.+|+.+.-.+ |+++|.+|++++
T Consensus 148 ~~~~~~~~~~g~~eii~tdi~~dGt~~G~d~~l~~~i~~~~--~~pvi~sGGv~s~~Di~~l~~l~~~g~~gvivg~al~ 225 (239)
T d1vzwa1 148 YETLDRLNKEGCARYVVTDIAKDGTLQGPNLELLKNVCAAT--DRPVVASGGVSSLDDLRAIAGLVPAGVEGAIVGKALY 225 (239)
T ss_dssp HHHHHHHHHTTCCCEEEEEC-------CCCHHHHHHHHHTC--SSCEEEESCCCSHHHHHHHHTTGGGTEEEEEECHHHH
T ss_pred chhhhhhhhccccEEEEEeecccceecCCcchhhhhhhhcc--CceEEEECCCCCHHHHHHHHhhhhCCccEeeEhHHHH
Confidence 0 11 113556777776654 7999999999999999887655 999999999987
Q ss_pred HH
Q 017718 311 YS 312 (367)
Q Consensus 311 ~~ 312 (367)
++
T Consensus 226 ~g 227 (239)
T d1vzwa1 226 AK 227 (239)
T ss_dssp TT
T ss_pred CC
Confidence 63
|
| >d1n7ka_ c.1.10.1 (A:) Deoxyribose-phosphate aldolase DeoC {Archaeon Aeropyrum pernix [TaxId: 56636]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Aldolase family: Class I aldolase domain: Deoxyribose-phosphate aldolase DeoC species: Archaeon Aeropyrum pernix [TaxId: 56636]
Probab=97.42 E-value=0.0011 Score=58.19 Aligned_cols=81 Identities=26% Similarity=0.269 Sum_probs=52.5
Q ss_pred CEEEEec-----CCHHH----HHHHHHcCCcEEEEcCCCCCCCCCccchHHHHHHHHHHhcCCCcEEEecCCCCHHHHHH
Q 017718 224 PILVKGV-----LTAED----ARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFK 294 (367)
Q Consensus 224 Pv~vK~v-----~~~~~----a~~~~~~G~d~i~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~~~via~GGI~~~~dv~k 294 (367)
+..+|.+ .+.+. ++.+.++|+|+|-.|. |-......+.....+.+. ..+.++.|=++|||||.+|+.+
T Consensus 133 g~~lKVIlEt~~L~~~~i~~a~~~a~~aGadFVKTST-G~~~~gat~~~~~~l~~~--~~~~~vgIKasGGIrt~~~a~~ 209 (234)
T d1n7ka_ 133 GAVVKVILEAPLWDDKTLSLLVDSSRRAGADIVKTST-GVYTKGGDPVTVFRLASL--AKPLGMGVKASGGIRSGIDAVL 209 (234)
T ss_dssp TCEEEEECCGGGSCHHHHHHHHHHHHHTTCSEEESCC-SSSCCCCSHHHHHHHHHH--HGGGTCEEEEESSCCSHHHHHH
T ss_pred CceEEEEEeccccchHHHHHHHHHHHHhhhhheeecc-cccCCCCCHHHHHHHHHH--hcCCCCcEEeeCCcCCHHHHHH
Confidence 3457876 34333 5678899999998763 321111112222223222 2234789999999999999999
Q ss_pred HHHcCCCEEEech
Q 017718 295 ALALGASGIFIGR 307 (367)
Q Consensus 295 al~lGAd~V~ig~ 307 (367)
++.+||+-++-.+
T Consensus 210 ~i~aGa~rIGtSs 222 (234)
T d1n7ka_ 210 AVGAGADIIGTSS 222 (234)
T ss_dssp HHHTTCSEEEETT
T ss_pred HHHccCceeecch
Confidence 9999999765443
|
| >d1thfd_ c.1.2.1 (D:) Cyclase subunit (or domain) of imidazoleglycerolphosphate synthase HisF {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Ribulose-phoshate binding barrel family: Histidine biosynthesis enzymes domain: Cyclase subunit (or domain) of imidazoleglycerolphosphate synthase HisF species: Thermotoga maritima [TaxId: 2336]
Probab=97.39 E-value=0.00026 Score=63.10 Aligned_cols=73 Identities=15% Similarity=0.202 Sum_probs=58.3
Q ss_pred HHHHHHHHcCCcEEEEcCC--CCCCCCCccchHHHHHHHHHHhcCCCcEEEecCCCCHHHHHHHHHcCCCEEEechHHHH
Q 017718 234 EDARIAVQAGAAGIIVSNH--GARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFIGRPVVY 311 (367)
Q Consensus 234 ~~a~~~~~~G~d~i~vs~~--gg~~~~~~~~~~~~l~~i~~~~~~~~~via~GGI~~~~dv~kal~lGAd~V~ig~~~l~ 311 (367)
+..+.+.+.|+..|++..- =|+ ..-+.++.+.++.+.. ++|++++||+++.+|+.+++..|+++|.+|++|.+
T Consensus 155 ~~~~~~~~~g~~eii~tdI~~dGt---~~G~d~~ll~~i~~~~--~~pvi~~GGv~s~~di~~l~~~g~~gvivgsal~~ 229 (253)
T d1thfd_ 155 DWVVEVEKRGAGEILLTSIDRDGT---KSGYDTEMIRFVRPLT--TLPIIASGGAGKMEHFLEAFLAGADAALAASVFHF 229 (253)
T ss_dssp HHHHHHHHTTCSEEEEEETTTTTS---CSCCCHHHHHHHGGGC--CSCEEEESCCCSHHHHHHHHHTTCSEEEESHHHHT
T ss_pred HHHHHHHhccCCEEEEEEecccCc---cCCccccccccccccc--cceEEEecCCCCHHHHHHHHHCCCCEEEEchHHHc
Confidence 5678899999999988541 121 1124667777776544 79999999999999999999999999999999876
|
| >d1vpxa_ c.1.10.1 (A:) Decameric fructose-6-phosphate aldolase/transaldolase {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Aldolase family: Class I aldolase domain: Decameric fructose-6-phosphate aldolase/transaldolase species: Thermotoga maritima [TaxId: 2336]
Probab=97.33 E-value=0.0077 Score=52.13 Aligned_cols=92 Identities=20% Similarity=0.157 Sum_probs=70.4
Q ss_pred cCCCEEEEecCCHHHHHHHHHcCCcEEEEcCCCCCCCCCccchHHHHHHHHHHh---cCCCcEEEecCCCCHHHHHHHHH
Q 017718 221 TKLPILVKGVLTAEDARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKAT---QGRIPVFLDGGVRRGTDVFKALA 297 (367)
Q Consensus 221 ~~~Pv~vK~v~~~~~a~~~~~~G~d~i~vs~~gg~~~~~~~~~~~~l~~i~~~~---~~~~~via~GGI~~~~dv~kal~ 297 (367)
.++++.+-.+.+.+.+..|.++|+++|... -||--+.|......+.++.+.. +.+..|++ +.+|+..++.+++.
T Consensus 102 ~Gi~~n~Tavfs~~Qa~~Aa~aga~yispy--~gR~~d~g~d~~~~i~~~~~~~~~~~~~tkil~-AS~r~~~~v~~a~~ 178 (218)
T d1vpxa_ 102 EGIKTNVTLVFSPAQAILAAKAGATYVSPF--VGRMDDLSNDGMRMLGEIVEIYNNYGFETEIIA-ASIRHPMHVVEAAL 178 (218)
T ss_dssp TTCCEEEEEECSHHHHHHHHHHTCSEEEEB--HHHHHHTTSCHHHHHHHHHHHHHHHTCSCEEEE-BSCCSHHHHHHHHH
T ss_pred cCCceeeEEecCHHHHHHHHhcCCCEEEee--ecchhhhcccchhhHHHHHHHHhhhcccceeee-eccCCHHHHHHHHH
Confidence 489999999999999999999999988763 3333333444555555554433 34677777 66999999999999
Q ss_pred cCCCEEEechHHHHHhhc
Q 017718 298 LGASGIFIGRPVVYSLAA 315 (367)
Q Consensus 298 lGAd~V~ig~~~l~~l~~ 315 (367)
+|||.+-+.-.++..+..
T Consensus 179 ~G~d~iTip~~v~~~l~~ 196 (218)
T d1vpxa_ 179 MGVDIVTMPFAVLEKLFK 196 (218)
T ss_dssp HTCSEEEECHHHHHHHTC
T ss_pred cCCCEEEcCHHHHHHHHC
Confidence 999999999988877653
|
| >d1ujpa_ c.1.2.4 (A:) Trp synthase alpha-subunit {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Ribulose-phoshate binding barrel family: Tryptophan biosynthesis enzymes domain: Trp synthase alpha-subunit species: Thermus thermophilus [TaxId: 274]
Probab=97.28 E-value=0.0017 Score=58.28 Aligned_cols=228 Identities=16% Similarity=0.148 Sum_probs=117.3
Q ss_pred ChHHHHHHHHHhCCccccccccCCCCchhhHHHhHhccccceeeccccCCCCCCccceeEcCeeeccceEeCcccchhcc
Q 017718 6 NVMEYEAIAKEKLPKMVFDYYASGAEDQWTLQENRNAFSRILFRPRILIDVSKIDMNTTVLGFKISMPIMIAPTAMQKMA 85 (367)
Q Consensus 6 ~~~d~~~~A~~~l~~~~~~y~~~ga~~~~t~~~n~~~~~~i~l~pr~l~~~~~vd~st~i~g~~l~~Pi~iAPm~~~~l~ 85 (367)
+++-|+++=+++- +..-.|+-.|--+..+..+-..+++. -+| .-=+|.++|.|+.=.|+ .
T Consensus 3 ~~e~F~~~k~~~~-~ali~yitaG~P~~~~~~~~l~~l~~------------gaD--iiElGiPfSDP~ADGpv-I---- 62 (271)
T d1ujpa_ 3 TLEAFAKARSEGR-AALIPYLTAGFPSREGFLQAVEEVLP------------YAD--LLEIGLPYSDPLGDGPV-I---- 62 (271)
T ss_dssp HHHHHHHHHHTTB-CEEEEEEETTSSCHHHHHHHHHHHGG------------GCS--SEEEECCCCC----CHH-H----
T ss_pred HHHHHHHHHHcCC-ceEEEEEeCcCCCHHHHHHHHHHHHc------------CCC--EEEeCCCCCCcccCCCe-e----
Confidence 3455554333322 34567888887766554444433321 111 12347888877644442 0
Q ss_pred CChhhHHHHHHHHHcCCceeecCCCCCCHHHHHhhCCCceEEEEeecCCHHH-HHHHHHHHHHcCCcEEEEecCCCCCCc
Q 017718 86 HPEGEYATARAASAAGTIMTLSSWSTSSVEEVASTGPGIRFFQLYVYKDRNV-VAQLVRRAERAGFKAIALTVDTPRLGR 164 (367)
Q Consensus 86 ~~~~e~~~a~aa~~~G~~~~vs~~~~~~~e~i~~~~~~~~~~QLy~~~d~~~-~~~~l~ra~~~G~~ai~itvd~p~~g~ 164 (367)
......|-+.|+-.- .. -..++++.+....|..+-.|.+.--.. .++.+++|.++|++++++ .|.|..
T Consensus 63 -----q~A~~rAL~~G~~~~--~~-~~~~~~~r~~~~~pivlm~Y~N~i~~~G~~~F~~~~~~aGvdGlii-pDLP~e-- 131 (271)
T d1ujpa_ 63 -----QRASELALRKGMSVQ--GA-LELVREVRALTEKPLFLMTYLNPVLAWGPERFFGLFKQAGATGVIL-PDLPPD-- 131 (271)
T ss_dssp -----HHHHHHHHHTTCCHH--HH-HHHHHHHHHHCCSCEEEECCHHHHHHHCHHHHHHHHHHHTCCEEEC-TTCCGG--
T ss_pred -----eeeeeeccccccchh--hH-HHHHHHHhcccCCcEEEEeechhhhhCCchhHhHHHhhcCceeEec-cchhhh--
Confidence 012222333333210 00 011234444444567776774221111 467899999999999864 454421
Q ss_pred hhHHhhhhcCCCCccccccccccccCccccccchhhHHHhhhccCccccHH-HHHhhcCCCEEEEec--CCHHHHHHHHH
Q 017718 165 READIKNRFTLPPFLTLKNFQGLDLGKMDEANDSGLAAYVAGQIDRSLSWK-WLQTITKLPILVKGV--LTAEDARIAVQ 241 (367)
Q Consensus 165 r~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~-~l~~~~~~Pv~vK~v--~~~~~a~~~~~ 241 (367)
....|. .+++ .++.++.=.. .+.+-.+...+
T Consensus 132 ---------------------------------------------e~~~~~~~~~~-~gl~~I~lvsPtT~~eRi~~i~~ 165 (271)
T d1ujpa_ 132 ---------------------------------------------EDPGLVRLAQE-IGLETVFLLAPTSTDARIATVVR 165 (271)
T ss_dssp ---------------------------------------------GCHHHHHHHHH-HTCEEECEECTTCCHHHHHHHHT
T ss_pred ---------------------------------------------hHHHHHHHhhc-cccceeeccCCCcchHHHHHHHH
Confidence 001222 3333 3554432122 34566677766
Q ss_pred cCCcEEEE-cCCCCCCCC--CccchHHHHHHHHHHhcCCCcEEEecCCCCHHHHHHHHHcCCCEEEechHHHHHhh
Q 017718 242 AGAAGIIV-SNHGARQLD--YVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFIGRPVVYSLA 314 (367)
Q Consensus 242 ~G~d~i~v-s~~gg~~~~--~~~~~~~~l~~i~~~~~~~~~via~GGI~~~~dv~kal~lGAd~V~ig~~~l~~l~ 314 (367)
..-.+|.+ |-.|=|... ......+.+.++++.. ++||++-=||++++|+.++ .|||+|.||++++..+.
T Consensus 166 ~s~GFIY~Vs~~GvTG~~~~~~~~~~~~i~~ik~~t--~~Pv~vGFGIs~~e~v~~~--~~ADGvIVGSAiV~~i~ 237 (271)
T d1ujpa_ 166 HATGFVYAVSVTGVTGMRERLPEEVKDLVRRIKART--ALPVAVGFGVSGKATAAQA--AVADGVVVGSALVRALE 237 (271)
T ss_dssp TCCSCEEEECC------------CCHHHHHHHHTTC--CSCEEEESCCCSHHHHHHH--TTSSEEEECHHHHHHHH
T ss_pred hCcchhhhhcccCccCccccchHHHHHHHHhhhccc--cCCeEEeCCCCCHHHHHHh--CCCCEEEEcHHHHHHHH
Confidence 66566765 332322111 1122445677776543 7998887799999998763 59999999999987654
|
| >d1jvna1 c.1.2.1 (A:230-552) Cyclase subunit (or domain) of imidazoleglycerolphosphate synthase HisF {Baker's yeast (Saccharomyces cerevisiae), His7 [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Ribulose-phoshate binding barrel family: Histidine biosynthesis enzymes domain: Cyclase subunit (or domain) of imidazoleglycerolphosphate synthase HisF species: Baker's yeast (Saccharomyces cerevisiae), His7 [TaxId: 4932]
Probab=97.22 E-value=0.00074 Score=62.26 Aligned_cols=75 Identities=19% Similarity=0.147 Sum_probs=60.8
Q ss_pred HHHHHHHHHcCCcEEEEcC--CCCCCCCCccchHHHHHHHHHHhcCCCcEEEecCCCCHHHHHHHHH-cCCCEEEechHH
Q 017718 233 AEDARIAVQAGAAGIIVSN--HGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALA-LGASGIFIGRPV 309 (367)
Q Consensus 233 ~~~a~~~~~~G~d~i~vs~--~gg~~~~~~~~~~~~l~~i~~~~~~~~~via~GGI~~~~dv~kal~-lGAd~V~ig~~~ 309 (367)
.+-++.+.+.|+--|.+.. +-|+ ..-..++.+.++.+.+ ++|||++||+.+.+|+.+++. .|+++|.+|+.|
T Consensus 223 ~~~i~~~~~~G~GEIlltdIdrDGt---~~G~D~el~~~i~~~~--~iPiIasGGi~s~~di~~ll~~~~v~gv~~gs~~ 297 (323)
T d1jvna1 223 WELTRACEALGAGEILLNCIDKDGS---NSGYDLELIEHVKDAV--KIPVIASSGAGVPEHFEEAFLKTRADACLGAGMF 297 (323)
T ss_dssp HHHHHHHHHTTCCEEEECCGGGTTT---CSCCCHHHHHHHHHHC--SSCEEECSCCCSHHHHHHHHHHSCCSEEEESHHH
T ss_pred HHHhhhhhccCcceeEEEeeccccc---ccccchhHHHHHHHhC--CCCEEEECCCCCHHHHHHHHHhCCCeEEEEhhHH
Confidence 3568899999999999864 1121 1225788888888877 799999999999999999987 479999999999
Q ss_pred HHH
Q 017718 310 VYS 312 (367)
Q Consensus 310 l~~ 312 (367)
.+.
T Consensus 298 ~~~ 300 (323)
T d1jvna1 298 HRG 300 (323)
T ss_dssp HTT
T ss_pred HcC
Confidence 873
|
| >d2flia1 c.1.2.2 (A:3-219) D-ribulose-5-phosphate 3-epimerase {Streptococcus pyogenes [TaxId: 1314]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Ribulose-phoshate binding barrel family: D-ribulose-5-phosphate 3-epimerase domain: D-ribulose-5-phosphate 3-epimerase species: Streptococcus pyogenes [TaxId: 1314]
Probab=97.01 E-value=0.0046 Score=53.52 Aligned_cols=49 Identities=20% Similarity=0.288 Sum_probs=36.9
Q ss_pred cchHHHHHHHHHHhc---CCCcEEEecCCCCHHHHHHHHHcCCCEEEechHHH
Q 017718 261 PATIMALEEVVKATQ---GRIPVFLDGGVRRGTDVFKALALGASGIFIGRPVV 310 (367)
Q Consensus 261 ~~~~~~l~~i~~~~~---~~~~via~GGI~~~~dv~kal~lGAd~V~ig~~~l 310 (367)
+..++-+.++++... .+++|.+||||. .+.+.+...+|||.+.+|+.++
T Consensus 149 ~~~~~ki~~l~~~~~~~~~~~~I~vDGGIn-~~~i~~l~~aGad~~V~Gsaif 200 (217)
T d2flia1 149 PECLEKVATVAKWRDEKGLSFDIEVDGGVD-NKTIRACYEAGANVFVAGSYLF 200 (217)
T ss_dssp GGGHHHHHHHHHHHHHTTCCCEEEEESSCC-TTTHHHHHHHTCCEEEESHHHH
T ss_pred hhhHHHHHHHHHHHHhcCCCeEEEEeCCCC-HHHHHHHHHCCCCEEEEchHHh
Confidence 345666666665442 368999999996 5578888899999999998644
|
| >d1hg3a_ c.1.1.1 (A:) Triosephosphate isomerase {Archaeon Pyrococcus woesei [TaxId: 2262]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Triosephosphate isomerase (TIM) family: Triosephosphate isomerase (TIM) domain: Triosephosphate isomerase species: Archaeon Pyrococcus woesei [TaxId: 2262]
Probab=96.99 E-value=0.0034 Score=54.45 Aligned_cols=90 Identities=21% Similarity=0.259 Sum_probs=60.6
Q ss_pred cCCCEEEEecCCHHHHHHHHHcCCcEEEEcCC--CCCCCCC---ccchHHHHHHHHHHhcCCCcEEEecCCCCHHHHHHH
Q 017718 221 TKLPILVKGVLTAEDARIAVQAGAAGIIVSNH--GARQLDY---VPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKA 295 (367)
Q Consensus 221 ~~~Pv~vK~v~~~~~a~~~~~~G~d~i~vs~~--gg~~~~~---~~~~~~~l~~i~~~~~~~~~via~GGI~~~~dv~ka 295 (367)
.++.+++. +....+++.+.+.+.+.|..-.. -|+.... -+.....+.+..+.+..++||+..|||.++.|+.++
T Consensus 115 ~gl~~i~c-v~~~~~~~~~~~~~~~iiAyEpvwaIGtg~~~~~~~~~~i~~~i~~i~~~~~~v~vlygGsV~~~n~~~~~ 193 (224)
T d1hg3a_ 115 VGLMTMVC-SNNPAVSAAVAALNPDYVAVEPPELIGTGIPVSKAKPEVITNTVELVKKVNPEVKVLCGAGISTGEDVKKA 193 (224)
T ss_dssp HTCEEEEE-ESSHHHHHHHHTTCCSEEEECCTTTTTTSCCTTTSCTHHHHHHHHHHHHHCTTSEEEEESSCCSHHHHHHH
T ss_pred cCCceeec-hhhHHHHHhhhhcccceEEecchHhhccccCCCchhhhhhhhhhhhhhhhccccceEEeCCcCCHHHHHHH
Confidence 35555554 35667788888888887766331 1222111 122222222223334558999999999999999999
Q ss_pred HHcCCCEEEechHHHH
Q 017718 296 LALGASGIFIGRPVVY 311 (367)
Q Consensus 296 l~lGAd~V~ig~~~l~ 311 (367)
+.+|+|+|.||++++.
T Consensus 194 ~~~g~dGvLVGsAsl~ 209 (224)
T d1hg3a_ 194 IELGTVGVLLASGVTK 209 (224)
T ss_dssp HHTTCSEEEESHHHHT
T ss_pred HhCCCCEEEEcceeec
Confidence 9999999999999885
|
| >d1w0ma_ c.1.1.1 (A:) Triosephosphate isomerase {Thermoproteus tenax [TaxId: 2271]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Triosephosphate isomerase (TIM) family: Triosephosphate isomerase (TIM) domain: Triosephosphate isomerase species: Thermoproteus tenax [TaxId: 2271]
Probab=96.98 E-value=0.0033 Score=54.72 Aligned_cols=89 Identities=21% Similarity=0.251 Sum_probs=61.7
Q ss_pred CCCEEEEecCCHHHHHHHHHcCCcEEEEcCC--CCCCCCCccchHHHHHHHH---HHhcCCCcEEEecCCCCHHHHHHHH
Q 017718 222 KLPILVKGVLTAEDARIAVQAGAAGIIVSNH--GARQLDYVPATIMALEEVV---KATQGRIPVFLDGGVRRGTDVFKAL 296 (367)
Q Consensus 222 ~~Pv~vK~v~~~~~a~~~~~~G~d~i~vs~~--gg~~~~~~~~~~~~l~~i~---~~~~~~~~via~GGI~~~~dv~kal 296 (367)
++.+++. +.+.+++..+.+.+.+.|..-.. .|+.....+...+.+.+.. .....++||+..|||.++.|+..++
T Consensus 114 gl~~ivc-vge~~~~~~~~~~~~~iIayep~waIGtg~~~~~~~~~~i~~~i~~~~~~~~~i~vlygGgV~~~n~~~~~~ 192 (226)
T d1w0ma_ 114 GLDVVVC-APDPRTSLAAAALGPHAVAVEPPELIGTGRAVSRYKPEAIVETVGLVSRHFPEVSVITGAGIESGDDVAAAL 192 (226)
T ss_dssp TCEEEEE-ESSHHHHHHHHHTCCSEEEECCGGGTTTSCCHHHHCHHHHHHHHHHHHHHCTTSEEEEESSCCSHHHHHHHH
T ss_pred CCEEEEe-cCchHHhhhhhccccceeeecchhhccCCCCCChhhhhHhhhhhhhhhccCCCceEEEecCcCChHHHHHHh
Confidence 5555553 46778888899999998877442 2332222222222222222 2233589999999999999999999
Q ss_pred HcCCCEEEechHHHH
Q 017718 297 ALGASGIFIGRPVVY 311 (367)
Q Consensus 297 ~lGAd~V~ig~~~l~ 311 (367)
.+|+|+|.||++++.
T Consensus 193 ~~g~dGvLVGsA~l~ 207 (226)
T d1w0ma_ 193 RLGTRGVLLASAAVK 207 (226)
T ss_dssp HTTCSEEEECHHHHT
T ss_pred cCCCCEEEechheec
Confidence 999999999999985
|
| >d1h5ya_ c.1.2.1 (A:) Cyclase subunit (or domain) of imidazoleglycerolphosphate synthase HisF {Archaeon Pyrobaculum aerophilum [TaxId: 13773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Ribulose-phoshate binding barrel family: Histidine biosynthesis enzymes domain: Cyclase subunit (or domain) of imidazoleglycerolphosphate synthase HisF species: Archaeon Pyrobaculum aerophilum [TaxId: 13773]
Probab=96.98 E-value=0.0014 Score=58.18 Aligned_cols=76 Identities=26% Similarity=0.290 Sum_probs=60.8
Q ss_pred HHHHHHHHHcCCcEEEEcCCCCCCCCCccchHHHHHHHHHHhcCCCcEEEecCCCCHHHHHHHHHcCCCEEEechHHHH
Q 017718 233 AEDARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFIGRPVVY 311 (367)
Q Consensus 233 ~~~a~~~~~~G~d~i~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~~~via~GGI~~~~dv~kal~lGAd~V~ig~~~l~ 311 (367)
.+.|+...+.|+|.|.+..-.+. ........+.+.++.+.+ .+|+.+.|||++-+|+.+++.+||+-|.+++..+.
T Consensus 35 ~~~a~~~~~~gadei~ivDl~~~-~~~~~~~~~~i~~i~~~~--~~pi~~gGGIr~~e~~~~ll~~G~~kVii~s~~~~ 110 (252)
T d1h5ya_ 35 VEMAVRYEEEGADEIAILDITAA-PEGRATFIDSVKRVAEAV--SIPVLVGGGVRSLEDATTLFRAGADKVSVNTAAVR 110 (252)
T ss_dssp HHHHHHHHHTTCSCEEEEECCCC-TTTHHHHHHHHHHHHHHC--SSCEEEESSCCSHHHHHHHHHHTCSEEEESHHHHH
T ss_pred HHHHHHHHHCCCCEEEEEecccc-ccccccHHHHHHHHHhhc--CCcceeecccchhhhhhhHhhcCCcEEEecccccC
Confidence 36788999999999987542221 223345677888888776 89999999999999999999999999999996543
|
| >d1thfd_ c.1.2.1 (D:) Cyclase subunit (or domain) of imidazoleglycerolphosphate synthase HisF {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Ribulose-phoshate binding barrel family: Histidine biosynthesis enzymes domain: Cyclase subunit (or domain) of imidazoleglycerolphosphate synthase HisF species: Thermotoga maritima [TaxId: 2336]
Probab=96.98 E-value=0.002 Score=57.10 Aligned_cols=75 Identities=17% Similarity=0.244 Sum_probs=59.5
Q ss_pred HHHHHHHHcCCcEEEEcCCCCCCCCCccchHHHHHHHHHHhcCCCcEEEecCCCCHHHHHHHHHcCCCEEEechHHHH
Q 017718 234 EDARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFIGRPVVY 311 (367)
Q Consensus 234 ~~a~~~~~~G~d~i~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~~~via~GGI~~~~dv~kal~lGAd~V~ig~~~l~ 311 (367)
+.|+...+.|+|.|.+-.--+ ...+.....+.+.++.+.. .+|+...|||++-+|+.+.+.+||+-|.+|+..+.
T Consensus 34 ~~a~~~~~~g~dei~ivDld~-~~~~~~~~~~~i~~i~~~~--~~pi~vgGGIr~~e~i~~~l~~Ga~kviigs~~~~ 108 (253)
T d1thfd_ 34 ELGKFYSEIGIDELVFLDITA-SVEKRKTMLELVEKVAEQI--DIPFTVGGGIHDFETASELILRGADKVSINTAAVE 108 (253)
T ss_dssp HHHHHHHHTTCCEEEEEESSC-SSSHHHHHHHHHHHHHTTC--CSCEEEESSCCSHHHHHHHHHTTCSEEEESHHHHH
T ss_pred HHHHHHHHcCCCEEEEEeecc-cccCcccHHHHHHHHHhcc--CccceeecccccchhhhhHHhcCCCEEEEChHHhh
Confidence 668999999999999854211 1223345667777776654 79999999999999999999999999999997653
|
| >d1mxsa_ c.1.10.1 (A:) KDPG aldolase {Pseudomonas putida [TaxId: 303]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Aldolase family: Class I aldolase domain: KDPG aldolase species: Pseudomonas putida [TaxId: 303]
Probab=96.86 E-value=0.0036 Score=54.22 Aligned_cols=120 Identities=17% Similarity=0.196 Sum_probs=86.7
Q ss_pred EEEEeecCCHHHHHHHHHHHHHcCCcEEEEecCCCCCCchhHHhhhhcCCCCccccccccccccCccccccchhhHHHhh
Q 017718 126 FFQLYVYKDRNVVAQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLTLKNFQGLDLGKMDEANDSGLAAYVA 205 (367)
Q Consensus 126 ~~QLy~~~d~~~~~~~l~ra~~~G~~ai~itvd~p~~g~r~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 205 (367)
.+-+....+.+...++++.+.+.|++.+-||...|.. .+
T Consensus 19 iipvl~~~~~~~a~~~~~al~~~Gi~~iEitl~~p~a--------------------------------------~~--- 57 (216)
T d1mxsa_ 19 ILPVITIAREEDILPLADALAAGGIRTLEVTLRSQHG--------------------------------------LK--- 57 (216)
T ss_dssp EEEEECCSCGGGHHHHHHHHHHTTCCEEEEESSSTHH--------------------------------------HH---
T ss_pred EEEEEECCCHHHHHHHHHHHHHCCCCEEEEeCCChhH--------------------------------------HH---
Confidence 3444446788888889999999999999998876521 00
Q ss_pred hccCccccHHHHHhhc-CCCEEEEecCCHHHHHHHHHcCCcEEEEcCCCCCCCCCccchHHHHHHHHHHhcCCCcEEEec
Q 017718 206 GQIDRSLSWKWLQTIT-KLPILVKGVLTAEDARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDG 284 (367)
Q Consensus 206 ~~~d~~~~~~~l~~~~-~~Pv~vK~v~~~~~a~~~~~~G~d~i~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~~~via~G 284 (367)
.++.+++.. ++-|.+..+.+.++++.+.++|+++++--+ ...+++....+ . .+|.+-
T Consensus 58 -------~i~~l~~~~p~~~vGaGTV~~~~~~~~a~~aGa~FivsP~----------~~~~v~~~a~~-~--~i~~iP-- 115 (216)
T d1mxsa_ 58 -------AIQVLREQRPELCVGAGTVLDRSMFAAVEAAGAQFVVTPG----------ITEDILEAGVD-S--EIPLLP-- 115 (216)
T ss_dssp -------HHHHHHHHCTTSEEEEECCCSHHHHHHHHHHTCSSEECSS----------CCHHHHHHHHH-C--SSCEEC--
T ss_pred -------HHHHHHHhCCCcceeeeeeecHHHHHHHHhCCCCEEECCC----------CcHHHHHHHHh-c--CCCccC--
Confidence 122555555 577888888999999999999999986421 13334433322 2 566654
Q ss_pred CCCCHHHHHHHHHcCCCEEEechH
Q 017718 285 GVRRGTDVFKALALGASGIFIGRP 308 (367)
Q Consensus 285 GI~~~~dv~kal~lGAd~V~ig~~ 308 (367)
|+.|+.++.+++.+||+.|=+--+
T Consensus 116 Gv~TpsEi~~A~~~G~~~vKlFPA 139 (216)
T d1mxsa_ 116 GISTPSEIMMGYALGYRRFKLFPA 139 (216)
T ss_dssp EECSHHHHHHHHTTTCCEEEETTH
T ss_pred CcCCHHHHHHHHHCCCCEEEeccc
Confidence 799999999999999999977653
|
| >d1l6wa_ c.1.10.1 (A:) Decameric fructose-6-phosphate aldolase/transaldolase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Aldolase family: Class I aldolase domain: Decameric fructose-6-phosphate aldolase/transaldolase species: Escherichia coli [TaxId: 562]
Probab=96.84 E-value=0.021 Score=49.24 Aligned_cols=91 Identities=15% Similarity=0.147 Sum_probs=71.4
Q ss_pred cCCCEEEEecCCHHHHHHHHHcCCcEEEEcCCCCCCCCCccchHHHHHHHHHH---hcCCCcEEEecCCCCHHHHHHHHH
Q 017718 221 TKLPILVKGVLTAEDARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKA---TQGRIPVFLDGGVRRGTDVFKALA 297 (367)
Q Consensus 221 ~~~Pv~vK~v~~~~~a~~~~~~G~d~i~vs~~gg~~~~~~~~~~~~l~~i~~~---~~~~~~via~GGI~~~~dv~kal~ 297 (367)
.++++-+=.+.+...+..+.++|+++|.. .-||-.+.|....+.+.++.+. .+.+..|++ +.+|+..++.+++.
T Consensus 102 ~Gi~vn~Tavfs~~Qa~~Aa~aga~yvsp--y~gR~~d~g~dg~~~i~~~~~~~~~~~~~tkIl~-AS~R~~~~v~~~~~ 178 (220)
T d1l6wa_ 102 EGIPTLGTAVYGAAQGLLSALAGAEYVAP--YVNRIDAQGGSGIQTVTDLHQLLKMHAPQAKVLA-ASFKTPRQALDCLL 178 (220)
T ss_dssp HTCCEEEEEECSHHHHHHHHHHTCSEEEE--BHHHHHHTTSCHHHHHHHHHHHHHHHCTTCEEEE-BCCSSHHHHHHHHH
T ss_pred cccchhhhhcccHHHHHHhhhcCCcEEee--eeeehhhcccCChHHHHHHHHHHHhcCCCceEee-hhcCCHHHHHHHHH
Confidence 48999999999999999999999999876 3344334455566666666543 334666666 77999999999999
Q ss_pred cCCCEEEechHHHHHhh
Q 017718 298 LGASGIFIGRPVVYSLA 314 (367)
Q Consensus 298 lGAd~V~ig~~~l~~l~ 314 (367)
+|||.+-+.-.++..+.
T Consensus 179 ~G~d~iTip~~v~~~l~ 195 (220)
T d1l6wa_ 179 AGCESITLPLDVAQQMI 195 (220)
T ss_dssp TTCSEEEECHHHHHHTT
T ss_pred cCCCEEEcCHHHHHHHh
Confidence 99999999999888764
|
| >d1ka9f_ c.1.2.1 (F:) Cyclase subunit (or domain) of imidazoleglycerolphosphate synthase HisF {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Ribulose-phoshate binding barrel family: Histidine biosynthesis enzymes domain: Cyclase subunit (or domain) of imidazoleglycerolphosphate synthase HisF species: Thermus thermophilus [TaxId: 274]
Probab=96.82 E-value=0.0016 Score=57.73 Aligned_cols=75 Identities=27% Similarity=0.305 Sum_probs=58.8
Q ss_pred HHHHHHHHcCCcEEEEcCCCCCCCCCccchHHHHHHHHHHhcCCCcEEEecCCCCHHHHHHHHHcCCCEEEechHHHH
Q 017718 234 EDARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFIGRPVVY 311 (367)
Q Consensus 234 ~~a~~~~~~G~d~i~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~~~via~GGI~~~~dv~kal~lGAd~V~ig~~~l~ 311 (367)
+.|+...+.|+|.+.+..-.+. ........+.+.++.+.+ .+|+...|||++-+|+.+.+.+||+-|.+|+..+.
T Consensus 34 ~~a~~~~~~g~dei~iiDl~~~-~~~~~~~~~~i~~i~~~~--~~pi~vgGGIrs~e~~~~ll~~Ga~kVii~s~~~~ 108 (251)
T d1ka9f_ 34 EAARAYDEAGADELVFLDISAT-HEERAILLDVVARVAERV--FIPLTVGGGVRSLEDARKLLLSGADKVSVNSAAVR 108 (251)
T ss_dssp HHHHHHHHHTCSCEEEEECCSS-TTCHHHHHHHHHHHHTTC--CSCEEEESSCCSHHHHHHHHHHTCSEEEECHHHHH
T ss_pred HHHHHHHHcCCCEEEEEecccc-cccchhHHHHHHHHHhcc--CcchheeccccCHHHHHHHHHcCCCEEEECchhhh
Confidence 5688899999999988542221 122334567777777655 79999999999999999999999999999996643
|
| >d1qapa1 c.1.17.1 (A:130-296) Quinolinic acid phosphoribosyltransferase (Nicotinate-nucleotide pyrophosphorylase, NadC), C-terminal domain {Salmonella typhimurium [TaxId: 90371]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Nicotinate/Quinolinate PRTase C-terminal domain-like family: NadC C-terminal domain-like domain: Quinolinic acid phosphoribosyltransferase (Nicotinate-nucleotide pyrophosphorylase, NadC), C-terminal domain species: Salmonella typhimurium [TaxId: 90371]
Probab=96.75 E-value=0.0059 Score=50.68 Aligned_cols=76 Identities=22% Similarity=0.281 Sum_probs=60.0
Q ss_pred CCEEEEecCCHHHHHHHHHcCCcEEEEcCCCCCCCCCccchHHHHHHHHHHhcCCCcEEEecCCCCHHHHHHHHHcCCCE
Q 017718 223 LPILVKGVLTAEDARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASG 302 (367)
Q Consensus 223 ~Pv~vK~v~~~~~a~~~~~~G~d~i~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~~~via~GGI~~~~dv~kal~lGAd~ 302 (367)
.+| .-.+.+.++++.+.++|+|.|.+.|- +.+.+.+..+.+..++.+-++||| +.+.+.++...|+|.
T Consensus 80 ~~I-eVEv~~~~~~~~a~~~g~diImLDN~----------~pe~~~~av~~i~~~~~lEaSGgI-~~~ni~~ya~~GVD~ 147 (167)
T d1qapa1 80 VPV-EVEVENLDELDDALKAGADIIMLDNF----------NTDQMREAVKRVNGQARLEVSGNV-TAETLREFAETGVDF 147 (167)
T ss_dssp SCE-EEEESSHHHHHHHHHTTCSEEEESSC----------CHHHHHHHHHTTCTTCCEEECCCS-CHHHHHHHHHTTCSE
T ss_pred ceE-EEecCcHHHHHHHHhcCCcEEEecCC----------CHHHHHHHHHhcCCceEEEEeCCC-CHHHHHHHHHcCCCE
Confidence 444 34778999999999999999999872 224455555556668899999998 568899999999999
Q ss_pred EEechHHH
Q 017718 303 IFIGRPVV 310 (367)
Q Consensus 303 V~ig~~~l 310 (367)
+.+|.+..
T Consensus 148 IS~galt~ 155 (167)
T d1qapa1 148 ISVGALTK 155 (167)
T ss_dssp EECSHHHH
T ss_pred EECCcccC
Confidence 99998653
|
| >d1qo2a_ c.1.2.1 (A:) Phosphoribosylformimino-5-aminoimidazole carboxamide ribotite isomerase HisA {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Ribulose-phoshate binding barrel family: Histidine biosynthesis enzymes domain: Phosphoribosylformimino-5-aminoimidazole carboxamide ribotite isomerase HisA species: Thermotoga maritima [TaxId: 2336]
Probab=96.74 E-value=0.0013 Score=57.96 Aligned_cols=74 Identities=12% Similarity=0.194 Sum_probs=57.8
Q ss_pred HHHHHHHHcCCcEEEEcCC--CCCCCCCccchHHHHHHHHHHhcCCCcEEEecCCCCHHHHHHHHHcC------CCEEEe
Q 017718 234 EDARIAVQAGAAGIIVSNH--GARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALG------ASGIFI 305 (367)
Q Consensus 234 ~~a~~~~~~G~d~i~vs~~--gg~~~~~~~~~~~~l~~i~~~~~~~~~via~GGI~~~~dv~kal~lG------Ad~V~i 305 (367)
+.++.+.+.|+..|++.+- -|+ .. -+.++.+..+.+.. ++|||++||+++.+|+.++..+| +++|.+
T Consensus 148 ~~~~~~~~~g~~eii~~dId~dGt--~~-G~d~~l~~~i~~~~--~~pvi~~GGv~s~~di~~l~~ig~~~~~~~~gviv 222 (241)
T d1qo2a_ 148 SLLKRLKEYGLEEIVHTEIEKDGT--LQ-EHDFSLTKKIAIEA--EVKVLAAGGISSENSLKTAQKVHTETNGLLKGVIV 222 (241)
T ss_dssp HHHHHHHTTTCCEEEEEETTHHHH--TC-CCCHHHHHHHHHHH--TCEEEEESSCCSHHHHHHHHHHHHHTTTSEEEEEE
T ss_pred HHHHHhhccccceEEEeehhhhhh--cc-ccchhhhhhhhccC--CceEEEECCCCCHHHHHHHHHccccccCCEeeEEE
Confidence 5578888999999998541 111 01 24777888887766 79999999999999999998765 889999
Q ss_pred chHHHHH
Q 017718 306 GRPVVYS 312 (367)
Q Consensus 306 g~~~l~~ 312 (367)
|++|.++
T Consensus 223 G~al~~g 229 (241)
T d1qo2a_ 223 GRAFLEG 229 (241)
T ss_dssp CHHHHTT
T ss_pred HHHHHCC
Confidence 9998753
|
| >d1p1xa_ c.1.10.1 (A:) Deoxyribose-phosphate aldolase DeoC {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Aldolase family: Class I aldolase domain: Deoxyribose-phosphate aldolase DeoC species: Escherichia coli [TaxId: 562]
Probab=96.67 E-value=0.0087 Score=52.84 Aligned_cols=80 Identities=25% Similarity=0.344 Sum_probs=53.0
Q ss_pred CCEEEEecC------CHHH----HHHHHHcCCcEEEEcCCCCCCCCCccchHHHHHHHHHH--hcCCCcEEEecCCCCHH
Q 017718 223 LPILVKGVL------TAED----ARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKA--TQGRIPVFLDGGVRRGT 290 (367)
Q Consensus 223 ~Pv~vK~v~------~~~~----a~~~~~~G~d~i~vs~~gg~~~~~~~~~~~~l~~i~~~--~~~~~~via~GGI~~~~ 290 (367)
.++.+|.+. +.+. .+.+.++|+|+|-.|. |-......+.....+.++.+. .+.++.|=++||||+.+
T Consensus 132 ~~~~lKVIlEt~~Ltd~e~i~~a~~ia~~aGadFvKTST-G~~~~gat~~~v~~m~~~i~~~~~~~~vgIKasGGIrt~~ 210 (250)
T d1p1xa_ 132 ANVLLKVIIETGELKDEALIRKASEISIKAGADFIKTST-GKVAVNATPESARIMMEVIRDMGVEKTVGFKPAGGVRTAE 210 (250)
T ss_dssp TTCEEEEECCHHHHCSHHHHHHHHHHHHHTTCSEEECCC-SCSSCCCCHHHHHHHHHHHHHHTCTTTCEEECBSSCCSHH
T ss_pred CCceEEEEEeccccCcHHHHHHHHHHHHHcCcCeEEecC-CcCCCCCCHHHHHHHHHHhhhhccCcceeeEecCCCCCHH
Confidence 456788872 2332 3567899999999874 311111223344444444332 13479999999999999
Q ss_pred HHHHHHHcCCCEE
Q 017718 291 DVFKALALGASGI 303 (367)
Q Consensus 291 dv~kal~lGAd~V 303 (367)
|+.+++.+||+.+
T Consensus 211 ~a~~~i~~ga~~i 223 (250)
T d1p1xa_ 211 DAQKYLAIADELF 223 (250)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHh
Confidence 9999999999855
|
| >d1qpoa1 c.1.17.1 (A:117-285) Quinolinic acid phosphoribosyltransferase (Nicotinate-nucleotide pyrophosphorylase, NadC), C-terminal domain {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Nicotinate/Quinolinate PRTase C-terminal domain-like family: NadC C-terminal domain-like domain: Quinolinic acid phosphoribosyltransferase (Nicotinate-nucleotide pyrophosphorylase, NadC), C-terminal domain species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=96.66 E-value=0.0034 Score=52.30 Aligned_cols=86 Identities=9% Similarity=-0.018 Sum_probs=61.5
Q ss_pred HHHhhcCCCEEEEecCCHHHHHHHHHcCCcEEEEcCCCCCCCCCccchHHHHHHHHHHhcCCCcEEEecCCCCHHHHHHH
Q 017718 216 WLQTITKLPILVKGVLTAEDARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKA 295 (367)
Q Consensus 216 ~l~~~~~~Pv~vK~v~~~~~a~~~~~~G~d~i~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~~~via~GGI~~~~dv~ka 295 (367)
.+|+..+..-+.-.+.+.++++.+.++|+|.|.+.|- .|......-+..+.....+.+-++||| +.+.+.++
T Consensus 72 ~~k~~~~~~~I~VEv~s~~q~~~a~~~~~diImLDN~-------sp~~~k~~v~~~~~~~~~i~lEaSGgI-~~~ni~~y 143 (169)
T d1qpoa1 72 AVRNAAPDLPCEVEVDSLEQLDAVLPEKPELILLDNF-------AVWQTQTAVQRRDSRAPTVMLESSGGL-SLQTAATY 143 (169)
T ss_dssp HHHHHCTTSCEEEEESSHHHHHHHGGGCCSEEEEETC-------CHHHHHHHHHHHHHHCTTCEEEEESSC-CTTTHHHH
T ss_pred hhhhhcCCCceEEEeccHHHhhhhhhcCCcEEEecCc-------ChHhHHHHHHHhhccCCeeEEEEeCCC-CHHHHHHH
Confidence 4555443333445678999999999999999999872 233333222223333346889999999 77889999
Q ss_pred HHcCCCEEEechHH
Q 017718 296 LALGASGIFIGRPV 309 (367)
Q Consensus 296 l~lGAd~V~ig~~~ 309 (367)
...|+|.+.+|.+.
T Consensus 144 a~~GvD~IS~galt 157 (169)
T d1qpoa1 144 AETGVDYLAVGALT 157 (169)
T ss_dssp HHTTCSEEECGGGT
T ss_pred HHcCCCEEECCccc
Confidence 99999999999753
|
| >d1wx0a1 c.1.10.1 (A:1-211) Decameric fructose-6-phosphate aldolase/transaldolase {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Aldolase family: Class I aldolase domain: Decameric fructose-6-phosphate aldolase/transaldolase species: Thermus thermophilus [TaxId: 274]
Probab=96.51 E-value=0.036 Score=47.37 Aligned_cols=91 Identities=22% Similarity=0.172 Sum_probs=70.7
Q ss_pred cCCCEEEEecCCHHHHHHHHHcCCcEEEEcCCCCCCCCCccchHHHHHHHHHHh---cCCCcEEEecCCCCHHHHHHHHH
Q 017718 221 TKLPILVKGVLTAEDARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKAT---QGRIPVFLDGGVRRGTDVFKALA 297 (367)
Q Consensus 221 ~~~Pv~vK~v~~~~~a~~~~~~G~d~i~vs~~gg~~~~~~~~~~~~l~~i~~~~---~~~~~via~GGI~~~~dv~kal~ 297 (367)
.++++-+=.+.+...+..|.++|+++|.. .-||-.+.+....+.+.++++.. +.+..|++ ..+|+..++.+++.
T Consensus 109 ~Gi~vn~T~vfs~~Qa~~Aa~aga~yisp--yvgR~~d~g~d~~~~~~~~~~~~~~~~~~tkil~-AS~R~~~~~~~~~~ 185 (211)
T d1wx0a1 109 EGIKVNMTLIFSANQALLAARAGASYVSP--FLGRVDDISWDGGELLREIVEMIQVQDLPVKVIA-ASIRHPRHVTEAAL 185 (211)
T ss_dssp TTCCEEEEEECSHHHHHHHHHTTCSEEEE--BHHHHHHTTSCHHHHHHHHHHHHHHTTCSCEEEE-BCCCSHHHHHHHHH
T ss_pred cCCceeEEEecCHHHHHHHHHcCCCEEEE--eeecchhccccchhHHHHHHHHHHhccccceeEe-eecCCHHHHHHHHH
Confidence 48999999999999999999999999877 33443344555566666665543 23667777 55999999999999
Q ss_pred cCCCEEEechHHHHHhh
Q 017718 298 LGASGIFIGRPVVYSLA 314 (367)
Q Consensus 298 lGAd~V~ig~~~l~~l~ 314 (367)
+|||.+-+.-.++..+.
T Consensus 186 ~G~d~vTi~~~v~~~l~ 202 (211)
T d1wx0a1 186 LGADIATMPHAVFKQLL 202 (211)
T ss_dssp TTCSEEEECHHHHHHHT
T ss_pred cCCCEEEeCHHHHHHHh
Confidence 99999999887776543
|
| >d1vzwa1 c.1.2.1 (A:2-240) Phosphoribosylformimino-5-aminoimidazole carboxamide ribotite isomerase HisA {Streptomyces coelicolor [TaxId: 1902]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Ribulose-phoshate binding barrel family: Histidine biosynthesis enzymes domain: Phosphoribosylformimino-5-aminoimidazole carboxamide ribotite isomerase HisA species: Streptomyces coelicolor [TaxId: 1902]
Probab=96.50 E-value=0.0024 Score=55.96 Aligned_cols=74 Identities=26% Similarity=0.281 Sum_probs=58.7
Q ss_pred HHHHHHHHHcCCcEEEEcCCCCCCCCCccchHHHHHHHHHHhcCCCcEEEecCCCCHHHHHHHHHcCCCEEEechHHH
Q 017718 233 AEDARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFIGRPVV 310 (367)
Q Consensus 233 ~~~a~~~~~~G~d~i~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~~~via~GGI~~~~dv~kal~lGAd~V~ig~~~l 310 (367)
.+.|+...+.|+|.|.+..=.+.. ......+.+..+.+.+ .+|+...|||++-+|+.+.+.+||+.|.+++..+
T Consensus 34 ~~~a~~~~~~ga~~l~i~DLd~~~--~~~~~~~~i~~i~~~~--~~pi~vGGGIrs~~~~~~ll~~Ga~kVvi~s~~~ 107 (239)
T d1vzwa1 34 LEAALAWQRSGAEWLHLVDLDAAF--GTGDNRALIAEVAQAM--DIKVELSGGIRDDDTLAAALATGCTRVNLGTAAL 107 (239)
T ss_dssp HHHHHHHHHTTCSEEEEEEHHHHH--TSCCCHHHHHHHHHHC--SSEEEEESSCCSHHHHHHHHHTTCSEEEECHHHH
T ss_pred HHHHHHHHHcCCCEEEEEeecccc--cccchHHHHHHHHhhc--CcceEeecccccchhhhhhhccccccchhhHHhh
Confidence 366888899999999985421111 1234567788887776 7999999999999999999999999999999654
|
| >d1vcva1 c.1.10.1 (A:1-226) Deoxyribose-phosphate aldolase DeoC {Archaeon Pyrobaculum aerophilum [TaxId: 13773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Aldolase family: Class I aldolase domain: Deoxyribose-phosphate aldolase DeoC species: Archaeon Pyrobaculum aerophilum [TaxId: 13773]
Probab=96.28 E-value=0.014 Score=50.58 Aligned_cols=91 Identities=20% Similarity=0.191 Sum_probs=59.9
Q ss_pred HHHhhcCCCEEEEec-----CCHHH----HHHHHHcCCcEEEEcCC-CCC--------CCCCccchHHHHHHHHHHhcCC
Q 017718 216 WLQTITKLPILVKGV-----LTAED----ARIAVQAGAAGIIVSNH-GAR--------QLDYVPATIMALEEVVKATQGR 277 (367)
Q Consensus 216 ~l~~~~~~Pv~vK~v-----~~~~~----a~~~~~~G~d~i~vs~~-gg~--------~~~~~~~~~~~l~~i~~~~~~~ 277 (367)
.+++..+ +.++|.+ ++.++ ++.+.++|+|+|-.|.. ++. .....+.....+.++.+..+++
T Consensus 106 ~v~~~~~-~~~lKVIlEt~~L~~~ei~~~~~~~~~aGadFIKTSTGf~~~g~~~~~~~~~~at~~~~~~~~~~~~~~g~~ 184 (226)
T d1vcva1 106 SVVGAAG-GRVVKVITEEPYLRDEERYTLYDIIAEAGAHFIKSSTGFAEEAYAARQGNPVHSTPERAAAIARYIKEKGYR 184 (226)
T ss_dssp HHHHHTT-TSEEEEECCGGGCCHHHHHHHHHHHHHHTCSEEECCCSCCCHHHHHHTTCCSSCCHHHHHHHHHHHHHHTCC
T ss_pred HHHhccC-CCeEEEEecccccCHHHHHHHHHHHHHcCcceeeecccccCCcccccccCcccCcHHHHHHHHHHHHHhCCc
Confidence 3444433 5567887 33332 56788999999998741 110 1112233455666666666678
Q ss_pred CcEEEecCCCCHHHHHHHHHc-------CCCEEEech
Q 017718 278 IPVFLDGGVRRGTDVFKALAL-------GASGIFIGR 307 (367)
Q Consensus 278 ~~via~GGI~~~~dv~kal~l-------GAd~V~ig~ 307 (367)
+-|=++||||+.+++.+++.+ ||.-++-.+
T Consensus 185 vgiKasGGIrt~~~A~~~i~a~~~~~~~ga~RiGtSs 221 (226)
T d1vcva1 185 LGVKMAGGIRTREQAKAIVDAIGWGEDPARVRLGTST 221 (226)
T ss_dssp CEEEEESSCCSHHHHHHHHHHHCSCSCTTTEEEEESC
T ss_pred eeEECcCCCCCHHHHHHHHHhhhcCCCCCCEEEecCC
Confidence 999999999999999999987 776665443
|
| >d1jvna1 c.1.2.1 (A:230-552) Cyclase subunit (or domain) of imidazoleglycerolphosphate synthase HisF {Baker's yeast (Saccharomyces cerevisiae), His7 [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Ribulose-phoshate binding barrel family: Histidine biosynthesis enzymes domain: Cyclase subunit (or domain) of imidazoleglycerolphosphate synthase HisF species: Baker's yeast (Saccharomyces cerevisiae), His7 [TaxId: 4932]
Probab=95.90 E-value=0.009 Score=54.73 Aligned_cols=77 Identities=22% Similarity=0.250 Sum_probs=56.7
Q ss_pred HHHHHHHHHcCCcEEEEcCCCCCC--CCCccchHHHHHHHHHHhcCCCcEEEecCCCCHHH-----------HHHHHHcC
Q 017718 233 AEDARIAVQAGAAGIIVSNHGARQ--LDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTD-----------VFKALALG 299 (367)
Q Consensus 233 ~~~a~~~~~~G~d~i~vs~~gg~~--~~~~~~~~~~l~~i~~~~~~~~~via~GGI~~~~d-----------v~kal~lG 299 (367)
.+.|+...+.|||.|.+-.--+.. ...-.+.++.+.++.+.+ .+||.+-|||++-+| +.+.+.+|
T Consensus 51 ~~~a~~~~~~gaDeL~ivDidas~~~~~~~~~~~~~I~~i~~~~--~vPi~vGGGIrsi~di~~~~~~~~e~A~~ll~~G 128 (323)
T d1jvna1 51 VQLAQKYYQQGADEVTFLNITSFRDCPLKDTPMLEVLKQAAKTV--FVPLTVGGGIKDIVDVDGTKIPALEVASLYFRSG 128 (323)
T ss_dssp HHHHHHHHHTTCSEEEEEEEC---CCCGGGCHHHHHHHHHTTTC--CSCEEEESSCSCEECTTCCEECHHHHHHHHHHHT
T ss_pred HHHHHHHHHCCCCEEEEEECcCCCCCcCCCchHHHHHHhhcccc--ceeEEEecCcccHHHhhhccchhhHHHHHHHHcC
Confidence 367899999999999974311110 111134567777776655 799999999999765 57888999
Q ss_pred CCEEEechHHHH
Q 017718 300 ASGIFIGRPVVY 311 (367)
Q Consensus 300 Ad~V~ig~~~l~ 311 (367)
||-|.|||..+.
T Consensus 129 adKVvI~T~ai~ 140 (323)
T d1jvna1 129 ADKVSIGTDAVY 140 (323)
T ss_dssp CSEEEECHHHHH
T ss_pred CCeEEechHHhh
Confidence 999999998764
|
| >d1mxsa_ c.1.10.1 (A:) KDPG aldolase {Pseudomonas putida [TaxId: 303]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Aldolase family: Class I aldolase domain: KDPG aldolase species: Pseudomonas putida [TaxId: 303]
Probab=95.83 E-value=0.068 Score=45.79 Aligned_cols=82 Identities=16% Similarity=0.151 Sum_probs=59.5
Q ss_pred hcCCCEEEEecCCHHHHHHHHHcCCcEEEEcCCCCCCCCCccchHHHHHHHHHHhcCCCcEEEecCCCCHHHHHHHHHcC
Q 017718 220 ITKLPILVKGVLTAEDARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALG 299 (367)
Q Consensus 220 ~~~~Pv~vK~v~~~~~a~~~~~~G~d~i~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~~~via~GGI~~~~dv~kal~lG 299 (367)
..++|++ =++.++.++..+.++|++.+.+.-.+ ..+ ....++.+..-++ .++++..|||.. +++.+.|.+|
T Consensus 108 ~~~i~~i-PGv~TpsEi~~A~~~G~~~vKlFPA~---~~~---g~~~ikal~~p~p-~~~fiptGGV~~-~n~~~yl~~~ 178 (216)
T d1mxsa_ 108 DSEIPLL-PGISTPSEIMMGYALGYRRFKLFPAE---ISG---GVAAIKAFGGPFG-DIRFCPTGGVNP-ANVRNYMALP 178 (216)
T ss_dssp HCSSCEE-CEECSHHHHHHHHTTTCCEEEETTHH---HHT---HHHHHHHHHTTTT-TCEEEEBSSCCT-TTHHHHHHST
T ss_pred hcCCCcc-CCcCCHHHHHHHHHCCCCEEEecccc---ccc---cHHHHHHHhcccc-cCceeccCCCCH-HHHHHHHhcC
Confidence 3578875 47899999999999999999995311 001 2234444443333 799999999974 7999999999
Q ss_pred CCEEEechHHH
Q 017718 300 ASGIFIGRPVV 310 (367)
Q Consensus 300 Ad~V~ig~~~l 310 (367)
+-+++.|+.++
T Consensus 179 ~v~avggs~l~ 189 (216)
T d1mxsa_ 179 NVMCVGTTWML 189 (216)
T ss_dssp TBCCEEECTTS
T ss_pred CeEEEEccccC
Confidence 88887777443
|
| >d1o4ua1 c.1.17.1 (A:104-273) Quinolinic acid phosphoribosyltransferase (Nicotinate-nucleotide pyrophosphorylase, NadC), C-terminal domain {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Nicotinate/Quinolinate PRTase C-terminal domain-like family: NadC C-terminal domain-like domain: Quinolinic acid phosphoribosyltransferase (Nicotinate-nucleotide pyrophosphorylase, NadC), C-terminal domain species: Thermotoga maritima [TaxId: 2336]
Probab=95.79 E-value=0.0079 Score=50.02 Aligned_cols=85 Identities=25% Similarity=0.218 Sum_probs=59.9
Q ss_pred HHHhhcC--CCEEEEecCCHHHHHHHHHcCCcEEEEcCCCCCCCCCccchHHHHHHHHHHhcCCCcEEEecCCCCHHHHH
Q 017718 216 WLQTITK--LPILVKGVLTAEDARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVF 293 (367)
Q Consensus 216 ~l~~~~~--~Pv~vK~v~~~~~a~~~~~~G~d~i~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~~~via~GGI~~~~dv~ 293 (367)
.+++..+ .+|.| .+.+.+++..+.++|+|.|.+.| ..|.....+.+..+....++.+-++|||. .+.+.
T Consensus 70 ~~~~~~~~~~~I~V-Ev~~~~e~~~a~~~g~d~i~LDn-------~~pe~~k~~~~~lk~~~~~i~lEaSGGI~-~~ni~ 140 (170)
T d1o4ua1 70 EVRKIIPFTTKIEV-EVENLEDALRAVEAGADIVMLDN-------LSPEEVKDISRRIKDINPNVIVEVSGGIT-EENVS 140 (170)
T ss_dssp HHHTTSCTTSCEEE-EESSHHHHHHHHHTTCSEEEEES-------CCHHHHHHHHHHHHHHCTTSEEEEEECCC-TTTGG
T ss_pred HHHhhCCCCceEEE-EeCcHHHHHHHHhcCccEEEEcC-------cChhhHhHHHHHHHhhCCcEEEEEECCCC-HHHHH
Confidence 4554432 45555 57889999999999999999987 22333333333333445579999999995 46677
Q ss_pred HHHHcCCCEEEechHH
Q 017718 294 KALALGASGIFIGRPV 309 (367)
Q Consensus 294 kal~lGAd~V~ig~~~ 309 (367)
++...|+|.+.+|.+.
T Consensus 141 ~~a~~GVD~Is~g~lt 156 (170)
T d1o4ua1 141 LYDFETVDVISSSRLT 156 (170)
T ss_dssp GGCCTTCCEEEEGGGT
T ss_pred HHHHcCCCEEEcCccc
Confidence 7777999999999754
|
| >d1tqxa_ c.1.2.2 (A:) D-ribulose-5-phosphate 3-epimerase {Plasmodium falciparum [TaxId: 5833]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Ribulose-phoshate binding barrel family: D-ribulose-5-phosphate 3-epimerase domain: D-ribulose-5-phosphate 3-epimerase species: Plasmodium falciparum [TaxId: 5833]
Probab=95.76 E-value=0.039 Score=47.46 Aligned_cols=105 Identities=12% Similarity=0.149 Sum_probs=68.4
Q ss_pred CCCEEEEec--CCHHHHHHHHH-cCCcEEEEcC-C-CCCCCCCccchHHHHHHHHHHhcCCCcEEEecCCCCHHHHHHHH
Q 017718 222 KLPILVKGV--LTAEDARIAVQ-AGAAGIIVSN-H-GARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKAL 296 (367)
Q Consensus 222 ~~Pv~vK~v--~~~~~a~~~~~-~G~d~i~vs~-~-gg~~~~~~~~~~~~l~~i~~~~~~~~~via~GGI~~~~dv~kal 296 (367)
++.+.+... .+.+......+ ..+|.|.+-. + |.......+..++-+.++++.. .++.|.+||||.. +.+.+..
T Consensus 111 g~~~Gial~p~t~~~~~~~~l~~~~~d~vlim~V~pG~~GQ~f~~~~l~KI~~lr~~~-~~~~I~VDGGIn~-~~i~~l~ 188 (221)
T d1tqxa_ 111 NLWCGISIKPKTDVQKLVPILDTNLINTVLVMTVEPGFGGQSFMHDMMGKVSFLRKKY-KNLNIQVDGGLNI-ETTEISA 188 (221)
T ss_dssp TCEEEEEECTTSCGGGGHHHHTTTCCSEEEEESSCTTCSSCCCCGGGHHHHHHHHHHC-TTCEEEEESSCCH-HHHHHHH
T ss_pred CCeEEEeeccccccccchhhcccccccEEEEEeecccccccccCcchhHHHHHHHHhc-CCcceEEEcccCH-HhHHHHH
Confidence 444544444 45566666654 4688887632 2 3222334456777788877653 4789999999965 6788888
Q ss_pred HcCCCEEEechHHHHHhhccChHHHHHHHHHHHHHHHH
Q 017718 297 ALGASGIFIGRPVVYSLAAEGEKGVRRVLEMLREEFEL 334 (367)
Q Consensus 297 ~lGAd~V~ig~~~l~~l~~~G~~~v~~~i~~l~~el~~ 334 (367)
.+|||.+.+|+.+ |. .+...+.++.|++.++.
T Consensus 189 ~aGad~iV~GS~i-f~-----~~d~~~~i~~Lr~~i~k 220 (221)
T d1tqxa_ 189 SHGANIIVAGTSI-FN-----AEDPKYVIDTMRVSVQK 220 (221)
T ss_dssp HHTCCEEEESHHH-HT-----CSSHHHHHHHHHHHHHH
T ss_pred HcCCCEEEEChHH-HC-----CCCHHHHHHHHHHHHhh
Confidence 9999999999875 42 12234566777766553
|
| >d1xkya1 c.1.10.1 (A:1-292) Dihydrodipicolinate synthase {Bacillus anthracis [TaxId: 1392]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Aldolase family: Class I aldolase domain: Dihydrodipicolinate synthase species: Bacillus anthracis [TaxId: 1392]
Probab=95.61 E-value=0.019 Score=51.16 Aligned_cols=87 Identities=15% Similarity=0.299 Sum_probs=57.3
Q ss_pred HHHHHHcCCcEEEEcCCCCCCCCCccc---hHHHHHHHHHHhcCCCcEEEecCCCCHHHHHH----HHHcCCCEEEechH
Q 017718 236 ARIAVQAGAAGIIVSNHGARQLDYVPA---TIMALEEVVKATQGRIPVFLDGGVRRGTDVFK----ALALGASGIFIGRP 308 (367)
Q Consensus 236 a~~~~~~G~d~i~vs~~gg~~~~~~~~---~~~~l~~i~~~~~~~~~via~GGI~~~~dv~k----al~lGAd~V~ig~~ 308 (367)
++.+.+.|++++.+.++.|-. ...+ -.+.+..+.+.+++++|||+.-|-.+..++++ +..+|||++++..|
T Consensus 30 i~~l~~~Gv~gl~~~G~tGE~--~~Ls~~Er~~l~~~~~~~~~~~~~vi~gv~~~s~~~~i~~a~~a~~~Gad~ilv~pP 107 (292)
T d1xkya1 30 VNYLIDNGTTAIVVGGTTGES--PTLTSEEKVALYRHVVSVVDKRVPVIAGTGSNNTHASIDLTKKATEVGVDAVMLVAP 107 (292)
T ss_dssp HHHHHHTTCCEEEESSTTTTG--GGSCHHHHHHHHHHHHHHHTTSSCEEEECCCSCHHHHHHHHHHHHHTTCSEEEEECC
T ss_pred HHHHHHCCCCEEEECeEccch--hhCCHHHHHHHHHHHHHHhCCCceEEEecCcccHHHHHHHHHHHHHcCCCEEEECCC
Confidence 466788999999996554421 2222 23445666666677899999777777776654 44589999999999
Q ss_pred HHHHhhccChHHHHHHHHH
Q 017718 309 VVYSLAAEGEKGVRRVLEM 327 (367)
Q Consensus 309 ~l~~l~~~G~~~v~~~i~~ 327 (367)
+.+. ..++++.++++.
T Consensus 108 ~~~~---~s~~~i~~~~~~ 123 (292)
T d1xkya1 108 YYNK---PSQEGMYQHFKA 123 (292)
T ss_dssp CSSC---CCHHHHHHHHHH
T ss_pred CCCC---CCHHHHHHHHHH
Confidence 7653 134444444443
|
| >d1xxxa1 c.1.10.1 (A:5-300) Dihydrodipicolinate synthase {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Aldolase family: Class I aldolase domain: Dihydrodipicolinate synthase species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=95.60 E-value=0.02 Score=51.22 Aligned_cols=90 Identities=21% Similarity=0.320 Sum_probs=59.0
Q ss_pred HHHHHHcCCcEEEEcCCCCCCCCCccc-hHHHHHHHHHHhcCCCcEEEecCCCCHHHHHH----HHHcCCCEEEechHHH
Q 017718 236 ARIAVQAGAAGIIVSNHGARQLDYVPA-TIMALEEVVKATQGRIPVFLDGGVRRGTDVFK----ALALGASGIFIGRPVV 310 (367)
Q Consensus 236 a~~~~~~G~d~i~vs~~gg~~~~~~~~-~~~~l~~i~~~~~~~~~via~GGI~~~~dv~k----al~lGAd~V~ig~~~l 310 (367)
++.+.+.|+++|.+.++.|-...-... -.+.+..+.+.+++++||++.-|=.+.+++++ |..+|||++++..|+.
T Consensus 34 i~~li~~Gv~Gi~v~G~tGE~~~Ls~eEr~~l~~~~~~~~~~~~~vi~g~~~~s~~~~i~~a~~a~~~Gad~v~i~~P~~ 113 (296)
T d1xxxa1 34 ANHLVDQGCDGLVVSGTTGESPTTTDGEKIELLRAVLEAVGDRARVIAGAGTYDTAHSIRLAKACAAEGAHGLLVVTPYY 113 (296)
T ss_dssp HHHHHHTTCSEEEESSTTTTTTTSCHHHHHHHHHHHHHHHTTTSEEEEECCCSCHHHHHHHHHHHHHHTCSEEEEECCCS
T ss_pred HHHHHHcCCCEEEECeeccchhhCCHHHHHHHHHHHHHHhccccceEeccccchhHHHHHHHHHHHHhcCCeEEEEeccC
Confidence 466789999999996655432221222 23445555666777899998766677676664 3457999999999987
Q ss_pred HHhhccChHHHHHHHHHH
Q 017718 311 YSLAAEGEKGVRRVLEML 328 (367)
Q Consensus 311 ~~l~~~G~~~v~~~i~~l 328 (367)
+. .+++++.++++.+
T Consensus 114 ~~---~~~~~l~~~~~~v 128 (296)
T d1xxxa1 114 SK---PPQRGLQAHFTAV 128 (296)
T ss_dssp SC---CCHHHHHHHHHHH
T ss_pred CC---CCHHHHHHHHHHH
Confidence 63 2445555554444
|
| >d2a6na1 c.1.10.1 (A:1-292) Dihydrodipicolinate synthase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Aldolase family: Class I aldolase domain: Dihydrodipicolinate synthase species: Escherichia coli [TaxId: 562]
Probab=95.56 E-value=0.019 Score=51.35 Aligned_cols=92 Identities=15% Similarity=0.243 Sum_probs=62.5
Q ss_pred HHHHHHcCCcEEEEcCCCCCCCCCccc-hHHHHHHHHHHhcCCCcEEEecCCCCHHHHHHHHH----cCCCEEEechHHH
Q 017718 236 ARIAVQAGAAGIIVSNHGARQLDYVPA-TIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALA----LGASGIFIGRPVV 310 (367)
Q Consensus 236 a~~~~~~G~d~i~vs~~gg~~~~~~~~-~~~~l~~i~~~~~~~~~via~GGI~~~~dv~kal~----lGAd~V~ig~~~l 310 (367)
++.+.+.|++++.+.++.|-...-... -.+.+..+++..++++||++..+=.+..++++... +|||++++..|+.
T Consensus 28 i~~l~~~Gv~Gl~~~GstGE~~~Ls~~Er~~~~~~~~~~~~~~~~vi~g~~~~s~~~~i~~~~~a~~~Gad~~~~~pP~~ 107 (292)
T d2a6na1 28 IDYHVASGTSAIVSVGTTGESATLNHDEHADVVMMTLDLADGRIPVIAGTGANATAEAISLTQRFNDSGIVGCLTVTPYY 107 (292)
T ss_dssp HHHHHHHTCCEEEESSTTTTGGGSCHHHHHHHHHHHHHHHTTSSCEEEECCCSSHHHHHHHHHTTTTSSCCEEEEECCCS
T ss_pred HHHHHHcCCCEEEECeeccchhhCCHHHHHHHhhhhhhhccccceeEeecccchHHHHHHHhccHHhcCCcceeccCCCC
Confidence 466788999999997654422111111 23455566677777899999888888888886664 6999999999987
Q ss_pred HHhhccChHHHHHHHHHHHH
Q 017718 311 YSLAAEGEKGVRRVLEMLRE 330 (367)
Q Consensus 311 ~~l~~~G~~~v~~~i~~l~~ 330 (367)
+. ..++++.++++.+.+
T Consensus 108 ~~---~~~~~i~~~f~~v~~ 124 (292)
T d2a6na1 108 NR---PSQEGLYQHFKAIAE 124 (292)
T ss_dssp SC---CCHHHHHHHHHHHHH
T ss_pred CC---CCHHHHHHHHHHHhh
Confidence 63 235555555555433
|
| >d1eepa_ c.1.5.1 (A:) Inosine monophosphate dehydrogenase (IMPDH) {Lyme disease spirochete (Borrelia burgdorferi) [TaxId: 139]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Inosine monophosphate dehydrogenase (IMPDH) family: Inosine monophosphate dehydrogenase (IMPDH) domain: Inosine monophosphate dehydrogenase (IMPDH) species: Lyme disease spirochete (Borrelia burgdorferi) [TaxId: 139]
Probab=95.33 E-value=0.019 Score=53.84 Aligned_cols=69 Identities=12% Similarity=0.215 Sum_probs=53.1
Q ss_pred HHHHHHHHHcCCcEEEEcCCCCCCCCCccchHHHHHHHHHHhcCCCcEEEecCCCCHHHHHHHHHcCCCEEEech
Q 017718 233 AEDARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFIGR 307 (367)
Q Consensus 233 ~~~a~~~~~~G~d~i~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~~~via~GGI~~~~dv~kal~lGAd~V~ig~ 307 (367)
.+-+..+.++|+|.|+++..-|+. ....+.+..+++.. .++|||+ |+|.|++.+...+..|||+|-+|-
T Consensus 153 ~~ra~~L~~aG~D~ivID~AhG~s----~~~~~~i~~ik~~~-~~v~vIa-GNV~T~e~a~~L~~~GaD~VkVGi 221 (388)
T d1eepa_ 153 IERVEELVKAHVDILVIDSAHGHS----TRIIELIKKIKTKY-PNLDLIA-GNIVTKEAALDLISVGADCLKVGI 221 (388)
T ss_dssp HHHHHHHHHTTCSEEEECCSCCSS----HHHHHHHHHHHHHC-TTCEEEE-EEECSHHHHHHHHTTTCSEEEECS
T ss_pred HHHHHHHHhhccceeeeeccccch----HHHHHHHHHHHHHC-CCCceee-ccccCHHHHHHHHhcCCCeeeecc
Confidence 466888999999999997533321 23456777777654 3688776 889999999999999999998874
|
| >d1viza_ c.1.4.1 (A:) PcrB protein homolog YerE {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: FMN-linked oxidoreductases family: FMN-linked oxidoreductases domain: PcrB protein homolog YerE species: Bacillus subtilis [TaxId: 1423]
Probab=94.90 E-value=0.022 Score=49.35 Aligned_cols=45 Identities=20% Similarity=0.257 Sum_probs=35.1
Q ss_pred HHHHHHHHHhcCCCcEEEecCCCCHHHHHHHHHcCCCEEEechHHHH
Q 017718 265 MALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFIGRPVVY 311 (367)
Q Consensus 265 ~~l~~i~~~~~~~~~via~GGI~~~~dv~kal~lGAd~V~ig~~~l~ 311 (367)
+.+..+++.+ .++||+.-+||++++++.++ +.|||+|.+|+++..
T Consensus 170 ~~~~~v~~~~-~~~Pl~VGFGIst~e~a~~v-~~~ADgVVVGSAiv~ 214 (229)
T d1viza_ 170 EAVKKTKAVL-ETSTLFYGGGIKDAETAKQY-AEHADVIVVGNAVYE 214 (229)
T ss_dssp HHHHHHHHTC-SSSEEEEESSCCSHHHHHHH-HTTCSEEEECTHHHH
T ss_pred hhHHHHHhhc-cCcceEEEcccCCHHHHHHH-HcCCCEEEECHHHHh
Confidence 4444454433 47999999999999999765 479999999998753
|
| >d1o5ka_ c.1.10.1 (A:) Dihydrodipicolinate synthase {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Aldolase family: Class I aldolase domain: Dihydrodipicolinate synthase species: Thermotoga maritima [TaxId: 2336]
Probab=94.85 E-value=0.032 Score=49.65 Aligned_cols=75 Identities=20% Similarity=0.342 Sum_probs=51.4
Q ss_pred HHHHHHHcCCcEEEEcCCCCCCCCCccc---hHHHHHHHHHHhcCCCcEEEecCCCCHHHHHHH----HHcCCCEEEech
Q 017718 235 DARIAVQAGAAGIIVSNHGARQLDYVPA---TIMALEEVVKATQGRIPVFLDGGVRRGTDVFKA----LALGASGIFIGR 307 (367)
Q Consensus 235 ~a~~~~~~G~d~i~vs~~gg~~~~~~~~---~~~~l~~i~~~~~~~~~via~GGI~~~~dv~ka----l~lGAd~V~ig~ 307 (367)
.++.+.+.|+++|.+.++.|-. ...+ -.+++..+.+...+++|||+.-|=.+..++++. -.+|||++++..
T Consensus 27 ~i~~l~~~Gv~Gi~v~GstGE~--~~Ls~~Er~~~~~~~~~~~~~~~~vi~gv~~~st~~ai~~a~~A~~~Gad~v~v~p 104 (295)
T d1o5ka_ 27 LVRYQLENGVNALIVLGTTGES--PTVNEDEREKLVSRTLEIVDGKIPVIVGAGTNSTEKTLKLVKQAEKLGANGVLVVT 104 (295)
T ss_dssp HHHHHHHTTCCEEEESSGGGTG--GGCCHHHHHHHHHHHHHHHTTSSCEEEECCCSCHHHHHHHHHHHHHHTCSEEEEEC
T ss_pred HHHHHHHcCCCEEEECeeccch--hhCCHHHHHHHhhhhccccccCCceEeecccccHHHHHHHHHHHHHcCCCEEEEeC
Confidence 3566788999999996544321 1222 223445555666678999998877777776643 347999999998
Q ss_pred HHHH
Q 017718 308 PVVY 311 (367)
Q Consensus 308 ~~l~ 311 (367)
|+.+
T Consensus 105 P~y~ 108 (295)
T d1o5ka_ 105 PYYN 108 (295)
T ss_dssp CCSS
T ss_pred CCCC
Confidence 8754
|
| >d1zfja1 c.1.5.1 (A:2-94,A:221-492) Inosine monophosphate dehydrogenase (IMPDH) {Streptococcus pyogenes [TaxId: 1314]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Inosine monophosphate dehydrogenase (IMPDH) family: Inosine monophosphate dehydrogenase (IMPDH) domain: Inosine monophosphate dehydrogenase (IMPDH) species: Streptococcus pyogenes [TaxId: 1314]
Probab=94.80 E-value=0.038 Score=51.23 Aligned_cols=68 Identities=15% Similarity=0.222 Sum_probs=52.0
Q ss_pred HHHHHHHHHcCCcEEEEcCCCCCCCCCccchHHHHHHHHHHhcCCCcEEEecCCCCHHHHHHHHHcCCCEEEec
Q 017718 233 AEDARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFIG 306 (367)
Q Consensus 233 ~~~a~~~~~~G~d~i~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~~~via~GGI~~~~dv~kal~lGAd~V~ig 306 (367)
.+-+..+.++|+|.|+++-..|+ .....+.+.++++.. .+++||+ |.|.|++.+.+.+..|||+|-+|
T Consensus 109 ~er~~~l~~agvd~ivID~A~G~----s~~~~~~i~~ik~~~-~~~~iIa-GNV~T~e~a~~L~~aGaD~VkVG 176 (365)
T d1zfja1 109 FERAEALFEAGADAIVIDTAHGH----SAGVLRKIAEIRAHF-PNRTLIA-GNIATAEGARALYDAGVDVVKVG 176 (365)
T ss_dssp HHHHHHHHHHTCSEEEECCSCTT----CHHHHHHHHHHHHHC-SSSCEEE-EEECSHHHHHHHHHTTCSEEEEC
T ss_pred HHHHHHHHHcCCCEEEEECCccc----ccchhHHHHHHHhhC-CCcceee-cccccHHHHHHHHhcCCceEEee
Confidence 45688889999999999753332 123456677777655 3677774 99999999999999999999887
|
| >d2f6ua1 c.1.4.1 (A:1001-1231) (S)-3-O-geranylgeranylglyceryl phosphate synthase {Archaeon Archaeoglobus fulgidus [TaxId: 2234]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: FMN-linked oxidoreductases family: FMN-linked oxidoreductases domain: (S)-3-O-geranylgeranylglyceryl phosphate synthase species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]
Probab=94.57 E-value=0.027 Score=48.69 Aligned_cols=46 Identities=22% Similarity=0.289 Sum_probs=36.4
Q ss_pred HHHHHHHHHHhcCCCcEEEecCCCCHHHHHHHHHcCCCEEEechHHHH
Q 017718 264 IMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFIGRPVVY 311 (367)
Q Consensus 264 ~~~l~~i~~~~~~~~~via~GGI~~~~dv~kal~lGAd~V~ig~~~l~ 311 (367)
.+.+..+++.+ .++||+.-+||+|++++.++.. +||+|.+|++++-
T Consensus 175 ~~~~~~~~k~~-~~~Pv~VGFGI~s~e~a~~~~~-~ADgvIVGSaive 220 (231)
T d2f6ua1 175 PELVAEVKKVL-DKARLFYGGGIDSREKAREMLR-YADTIIVGNVIYE 220 (231)
T ss_dssp HHHHHHHHHHC-SSSEEEEESCCCSHHHHHHHHH-HSSEEEECHHHHH
T ss_pred hhHHHHHHHhc-CCCCEEEEeCcCCHHHHHHHHh-cCCEEEEChHHhc
Confidence 34455555554 3799999999999999987665 8999999998854
|
| >d1h1ya_ c.1.2.2 (A:) D-ribulose-5-phosphate 3-epimerase {Rice (Oryza sativa) [TaxId: 4530]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Ribulose-phoshate binding barrel family: D-ribulose-5-phosphate 3-epimerase domain: D-ribulose-5-phosphate 3-epimerase species: Rice (Oryza sativa) [TaxId: 4530]
Probab=94.55 E-value=0.099 Score=44.79 Aligned_cols=95 Identities=20% Similarity=0.305 Sum_probs=60.4
Q ss_pred CCHHHHHHHHHc--CCcEEEEcC-C-CCCCCCCccchHHHHHHHHHHhcCCCcEEEecCCCCHHHHHHHHHcCCCEEEec
Q 017718 231 LTAEDARIAVQA--GAAGIIVSN-H-GARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFIG 306 (367)
Q Consensus 231 ~~~~~a~~~~~~--G~d~i~vs~-~-gg~~~~~~~~~~~~l~~i~~~~~~~~~via~GGI~~~~dv~kal~lGAd~V~ig 306 (367)
.+.+......+. .+|.+.+-. . |......-+..++-+.++++.. .+++|.+||||..- .+.+...+|||.+.+|
T Consensus 119 t~~~~~~~~l~~~~~~d~vlim~v~PG~~GQ~f~~~~l~kI~~l~~~~-~~~~I~VDGGIn~~-~i~~l~~aGad~~V~G 196 (220)
T d1h1ya_ 119 TPVEEVFPLVEAENPVELVLVMTVEPGFGGQKFMPEMMEKVRALRKKY-PSLDIEVDGGLGPS-TIDVAASAGANCIVAG 196 (220)
T ss_dssp SCGGGGHHHHHSSSCCSEEEEESSCTTCSSCCCCGGGHHHHHHHHHHC-TTSEEEEESSCSTT-THHHHHHHTCCEEEES
T ss_pred cchhHHHHHHhcccccceEEEEecCCCCcccccchhhhHHHHHHHhcC-CCceEEEEecCCHH-HHHHHHHCCCCEEEEC
Confidence 455555555543 378777643 2 2222233456777788877653 47999999999874 6778888999999999
Q ss_pred hHHHHHhhccChHHHHHHHHHHHHHHH
Q 017718 307 RPVVYSLAAEGEKGVRRVLEMLREEFE 333 (367)
Q Consensus 307 ~~~l~~l~~~G~~~v~~~i~~l~~el~ 333 (367)
+.+ |. .+...+.+..|++.++
T Consensus 197 S~i-f~-----~~d~~~~i~~lr~~~~ 217 (220)
T d1h1ya_ 197 SSI-FG-----AAEPGEVISALRKSVE 217 (220)
T ss_dssp HHH-HT-----SSCHHHHHHHHHHHHH
T ss_pred HHH-HC-----CCCHHHHHHHHHHHHH
Confidence 974 42 1223345555555443
|
| >d1qo2a_ c.1.2.1 (A:) Phosphoribosylformimino-5-aminoimidazole carboxamide ribotite isomerase HisA {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Ribulose-phoshate binding barrel family: Histidine biosynthesis enzymes domain: Phosphoribosylformimino-5-aminoimidazole carboxamide ribotite isomerase HisA species: Thermotoga maritima [TaxId: 2336]
Probab=94.54 E-value=0.02 Score=49.83 Aligned_cols=74 Identities=18% Similarity=0.168 Sum_probs=52.9
Q ss_pred HHHHHHHHcCCcEEEEcCCCCCCCCCccchHHHHHHHHHHhcCCCcEEEecCCCCHHHHHHHHHcCCCEEEechHHHH
Q 017718 234 EDARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFIGRPVVY 311 (367)
Q Consensus 234 ~~a~~~~~~G~d~i~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~~~via~GGI~~~~dv~kal~lGAd~V~ig~~~l~ 311 (367)
+.|+...+.|+|.+.+-.=.+. ..+.+.....+..+.+ . .+|+...|||++-+|+.+.+..||+-|.+++.++.
T Consensus 34 ~~a~~~~~~g~~~l~ivDLda~-~~~~~~~~~~~~~~~~-~--~~pl~~gGGI~s~~~~~~~~~~Ga~kVvi~s~~~~ 107 (241)
T d1qo2a_ 34 ELVEKLIEEGFTLIHVVDLSNA-IENSGENLPVLEKLSE-F--AEHIQIGGGIRSLDYAEKLRKLGYRRQIVSSKVLE 107 (241)
T ss_dssp HHHHHHHHTTCCCEEEEEHHHH-HHCCCTTHHHHHHGGG-G--GGGEEEESSCCSHHHHHHHHHTTCCEEEECHHHHH
T ss_pred HHHHHHHHCCCCEEEEEecccc-cccCCcchhheehhcc-c--ccchhhhhhhhhhhhhhhccccccceEecCccccc
Confidence 6789999999999987431100 0112333334433332 3 47999999999999999999999999999996643
|
| >d2a4aa1 c.1.10.1 (A:3-258) Fructose-1,6-bisphosphate aldolase {Plasmodium yoelii yoelii [TaxId: 73239]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Aldolase family: Class I aldolase domain: Fructose-1,6-bisphosphate aldolase species: Plasmodium yoelii yoelii [TaxId: 73239]
Probab=94.45 E-value=0.026 Score=49.86 Aligned_cols=79 Identities=16% Similarity=0.243 Sum_probs=50.5
Q ss_pred CEEEEecC------CHHH---HH-HHHHcCCcEEEEcCCCCCCCCCccchHHHHHHHHHH-------hcCCCcEEEecCC
Q 017718 224 PILVKGVL------TAED---AR-IAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKA-------TQGRIPVFLDGGV 286 (367)
Q Consensus 224 Pv~vK~v~------~~~~---a~-~~~~~G~d~i~vs~~gg~~~~~~~~~~~~l~~i~~~-------~~~~~~via~GGI 286 (367)
+.++|.+. +.+. +. .+.++|+|+|--|. |-......+.....+.+..+. .++++.|=++|||
T Consensus 135 ~~~lKVIlEt~~L~~~e~i~~~~~~~~~aGadFVKTST-G~~~~gat~~~v~~m~~~v~e~~~~~~~~g~~~gVKASGGI 213 (256)
T d2a4aa1 135 NKILKVIIEVGELKTEDLIIKTTLAVLNGNADFIKTST-GKVQINATPSSVEYIIKAIKEYIKNNPEKNNKIGLKVSGGI 213 (256)
T ss_dssp TSEEEEECCHHHHCSHHHHHHHHHHHHTTTCSEEECCC-SCSSCCCCHHHHHHHHHHHHHHHHHCGGGTTCCEEEEESSC
T ss_pred CCeeEeeehhhhcCcHHHHHHHHHHHHhcccHHHHhcc-CCCCCCCCHHHHHHHHHHHHHHHhhccccCCceeEEecCCC
Confidence 45578772 2232 33 34689999998863 311111223344444333221 1458999999999
Q ss_pred CCHHHHHHHHHcCCCEE
Q 017718 287 RRGTDVFKALALGASGI 303 (367)
Q Consensus 287 ~~~~dv~kal~lGAd~V 303 (367)
|+.+++.+++.+||+.+
T Consensus 214 rt~~~a~~~i~~g~~~l 230 (256)
T d2a4aa1 214 SDLNTASHYILLARRFL 230 (256)
T ss_dssp CSHHHHHHHHHHHHHHT
T ss_pred CCHHHHHHHHHHHHHhc
Confidence 99999999999999864
|
| >d1vhca_ c.1.10.1 (A:) Hypothetical protein HI0047 {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Aldolase family: Class I aldolase domain: Hypothetical protein HI0047 species: Haemophilus influenzae [TaxId: 727]
Probab=94.17 E-value=0.056 Score=46.22 Aligned_cols=76 Identities=22% Similarity=0.233 Sum_probs=56.5
Q ss_pred HHHhhc-CCCEEEEecCCHHHHHHHHHcCCcEEEEcCCCCCCCCCccchHHHHHHHHHHhcCCCcEEEecCCCCHHHHHH
Q 017718 216 WLQTIT-KLPILVKGVLTAEDARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFK 294 (367)
Q Consensus 216 ~l~~~~-~~Pv~vK~v~~~~~a~~~~~~G~d~i~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~~~via~GGI~~~~dv~k 294 (367)
.+++.. ++-|.+..+.+.++++.+.++|+++++-- + ...+++..+.+ . ++|.+ =|+.|+.++..
T Consensus 58 ~l~~~~p~~~vGaGTV~~~~~~~~a~~aGa~FivSP---~-------~~~~v~~~a~~-~--~i~~i--PGv~TpsEi~~ 122 (212)
T d1vhca_ 58 LLRANRPDFLIAAGTVLTAEQVVLAKSSGADFVVTP---G-------LNPKIVKLCQD-L--NFPIT--PGVNNPMAIEI 122 (212)
T ss_dssp HHHHHCTTCEEEEESCCSHHHHHHHHHHTCSEEECS---S-------CCHHHHHHHHH-T--TCCEE--CEECSHHHHHH
T ss_pred HHHhcCCCceEeeeecccHHHHHHHHhhCCcEEECC---C-------CCHHHHHHHHh-c--CCCcc--CCcCCHHHHHH
Confidence 666655 57788888899999999999999998641 1 13344443332 2 56655 47999999999
Q ss_pred HHHcCCCEEEec
Q 017718 295 ALALGASGIFIG 306 (367)
Q Consensus 295 al~lGAd~V~ig 306 (367)
|+.+||+.|=+-
T Consensus 123 A~~~G~~~vK~F 134 (212)
T d1vhca_ 123 ALEMGISAVKFF 134 (212)
T ss_dssp HHHTTCCEEEET
T ss_pred HHHCCCCEEEEc
Confidence 999999988664
|
| >d1wbha1 c.1.10.1 (A:1-213) KDPG aldolase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Aldolase family: Class I aldolase domain: KDPG aldolase species: Escherichia coli [TaxId: 562]
Probab=94.08 E-value=0.071 Score=45.60 Aligned_cols=76 Identities=16% Similarity=0.145 Sum_probs=56.7
Q ss_pred HHHhhc-CCCEEEEecCCHHHHHHHHHcCCcEEEEcCCCCCCCCCccchHHHHHHHHHHhcCCCcEEEecCCCCHHHHHH
Q 017718 216 WLQTIT-KLPILVKGVLTAEDARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFK 294 (367)
Q Consensus 216 ~l~~~~-~~Pv~vK~v~~~~~a~~~~~~G~d~i~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~~~via~GGI~~~~dv~k 294 (367)
.++++. ++-|.+..+.+.++++.+.++|+++++--+ ...+++..+.+ . .+|+|- |+.|+.++..
T Consensus 59 ~l~~~~p~~~vGaGTV~~~~~~~~a~~aGa~FivSP~----------~~~~v~~~a~~-~--~i~~iP--Gv~TpsEi~~ 123 (213)
T d1wbha1 59 AIAKEVPEAIVGAGTVLNPQQLAEVTEAGAQFAISPG----------LTEPLLKAATE-G--TIPLIP--GISTVSELML 123 (213)
T ss_dssp HHHHHCTTSEEEEESCCSHHHHHHHHHHTCSCEEESS----------CCHHHHHHHHH-S--SSCEEE--EESSHHHHHH
T ss_pred HHHHHCCCCeeeccccccHHHHHHHHHCCCcEEECCC----------CCHHHHHHHHh-c--CCCccC--CcCCHHHHHH
Confidence 666665 567777778999999999999999987521 13334433322 2 577665 7999999999
Q ss_pred HHHcCCCEEEec
Q 017718 295 ALALGASGIFIG 306 (367)
Q Consensus 295 al~lGAd~V~ig 306 (367)
++.+||+.|=+-
T Consensus 124 A~~~G~~~vKlF 135 (213)
T d1wbha1 124 GMDYGLKEFKFF 135 (213)
T ss_dssp HHHTTCCEEEET
T ss_pred HHHCCCCEEEec
Confidence 999999998654
|
| >d1ea0a2 c.1.4.1 (A:423-1193) Alpha subunit of glutamate synthase, central and FMN domains {Azospirillum brasilense [TaxId: 192]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: FMN-linked oxidoreductases family: FMN-linked oxidoreductases domain: Alpha subunit of glutamate synthase, central and FMN domains species: Azospirillum brasilense [TaxId: 192]
Probab=93.85 E-value=0.3 Score=48.92 Aligned_cols=120 Identities=13% Similarity=0.112 Sum_probs=83.7
Q ss_pred HHHHHHHHcCCcEEEEcCCCCCCCCCccchHHHHHHHHHHh-----cCCCcEEE-ecCCCCHHHHHHHHHcCCCEEEech
Q 017718 234 EDARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKAT-----QGRIPVFL-DGGVRRGTDVFKALALGASGIFIGR 307 (367)
Q Consensus 234 ~~a~~~~~~G~d~i~vs~~gg~~~~~~~~~~~~l~~i~~~~-----~~~~~via-~GGI~~~~dv~kal~lGAd~V~ig~ 307 (367)
++|..+++.|+..|++|..+-..-....|.+-++..+..++ +.++-||+ +|-+|+.-|++-.+-.||++|.=.-
T Consensus 169 ~eA~~AV~~G~~ilILSDr~~~~~~~~IP~LLAv~aVHh~Lir~gLR~~~sIIveSGeare~Hh~A~LiGyGA~AV~PYL 248 (771)
T d1ea0a2 169 QETEDAVRGGATHVILTDEAMGPARAAIPAILATGAVHTHLIRSNLRTFTSLNVRTAEGLDTHYFAVLIGVGATTVNAYL 248 (771)
T ss_dssp HHHHHHHHHTCCEEEEECTTCBTTEEECCHHHHHHHHHHHHHTTTCGGGCEEEEECSSCCSHHHHHHHHTTTCSEEECHH
T ss_pred HHHHHHHhCCCcEEEEeccccccchhhhHHHHHHHHHHHHHHHcCCCccceeEEeehhhhhhhhhhheeeccccccChHH
Confidence 34778899999999998754211112234444455554443 34677777 7788999999988889999996322
Q ss_pred HH--HHHhhccC-------hHHHHHHHHHHHHHHHHHHHHhCCCChhhhccccee
Q 017718 308 PV--VYSLAAEG-------EKGVRRVLEMLREEFELAMALSGCRSLKEITRDHIV 353 (367)
Q Consensus 308 ~~--l~~l~~~G-------~~~v~~~i~~l~~el~~~m~~~G~~si~~l~~~~l~ 353 (367)
++ +.-+...+ ++.+.++.+.+.+.|...|..+|.++++.-++.-+.
T Consensus 249 a~e~i~~~~~~~~~~~~~~~~a~~ny~kAi~kGLlKIMSKMGIStl~SY~GaqiF 303 (771)
T d1ea0a2 249 AQEAIAERHRRGLFGSMPLEKGMANYKKAIDDGLLKIMSKMGISVISSYRGGGNF 303 (771)
T ss_dssp HHHHHHHHHTTTTTTTCCHHHHHHHHHHHHHHHHHHHHHTTTCCCHHHHTTSCCE
T ss_pred HHHHHHHHHhhhhccCCCHHHHHHHHHHHHHHHHHHHHHHhchhhhhHHHHhhhh
Confidence 22 11111111 356889999999999999999999999998877554
|
| >d2czda1 c.1.2.3 (A:1-206) Orotidine 5'-monophosphate decarboxylase (OMP decarboxylase) {Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Ribulose-phoshate binding barrel family: Decarboxylase domain: Orotidine 5'-monophosphate decarboxylase (OMP decarboxylase) species: Pyrococcus horikoshii [TaxId: 53953]
Probab=93.79 E-value=0.096 Score=44.10 Aligned_cols=80 Identities=18% Similarity=0.299 Sum_probs=50.1
Q ss_pred HHHHHHcCCcEEEEcCCCCCCCCCccchHHHHHHHHHHhcCCCcEEEecCCC-CHHHHHHHHHcCCCEEEechHHHHHhh
Q 017718 236 ARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVR-RGTDVFKALALGASGIFIGRPVVYSLA 314 (367)
Q Consensus 236 a~~~~~~G~d~i~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~~~via~GGI~-~~~dv~kal~lGAd~V~ig~~~l~~l~ 314 (367)
.+.+.+++..+++.+. ...+.+..+++..+..+.++.. ||+ .+.+..+++..|||.+.+||++..+
T Consensus 125 ~~~a~~~~~~g~~~~~----------~~~~~~~~~r~~~~~~~~i~~p-GI~~~~~~~~~ai~~Gad~iVvGR~I~~a-- 191 (206)
T d2czda1 125 IEVANEIEPFGVIAPG----------TRPERIGYIRDRLKEGIKILAP-GIGAQGGKAKDAVKAGADYIIVGRAIYNA-- 191 (206)
T ss_dssp HHHHHHHCCSEEECCC----------SSTHHHHHHHHHSCTTCEEEEC-CCCSSTTHHHHHHHHTCSEEEECHHHHTS--
T ss_pred HHHHHhcccccccccc----------cCchhhhhhhhhhcccceEECC-CccccCCCHHHHHHhCCCEEEEChhhccC--
Confidence 4566677888876532 1123355555555545655554 454 3457778889999999999999742
Q ss_pred ccChHHHHHHHHHHHHHH
Q 017718 315 AEGEKGVRRVLEMLREEF 332 (367)
Q Consensus 315 ~~G~~~v~~~i~~l~~el 332 (367)
..+ .+.++.+++||
T Consensus 192 -~dP---~~aa~~i~~~i 205 (206)
T d2czda1 192 -PNP---REAAKAIYDEI 205 (206)
T ss_dssp -SSH---HHHHHHHHHHH
T ss_pred -CCH---HHHHHHHHHHh
Confidence 222 34566666665
|
| >d1vrda1 c.1.5.1 (A:1-85,A:213-457) Inosine monophosphate dehydrogenase (IMPDH) {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Inosine monophosphate dehydrogenase (IMPDH) family: Inosine monophosphate dehydrogenase (IMPDH) domain: Inosine monophosphate dehydrogenase (IMPDH) species: Thermotoga maritima [TaxId: 2336]
Probab=93.54 E-value=0.11 Score=47.29 Aligned_cols=68 Identities=22% Similarity=0.296 Sum_probs=50.4
Q ss_pred HHHHHHHHHcCCcEEEEcCCCCCCCCCccchHHHHHHHHHHhcCCCcEEEecCCCCHHHHHHHHHcCCCEEEec
Q 017718 233 AEDARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFIG 306 (367)
Q Consensus 233 ~~~a~~~~~~G~d~i~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~~~via~GGI~~~~dv~kal~lGAd~V~ig 306 (367)
.+.+..+.++|+|.|+++...|+. ....+.+..+++.. .+++||+ |.+.+.+.+.+.+..|||+|-+|
T Consensus 100 ~e~~~~li~agvd~ivId~A~G~~----~~~~~~ik~ik~~~-~~~~via-GnV~t~~~a~~l~~~GaD~v~VG 167 (330)
T d1vrda1 100 MERVEKLVKAGVDVIVIDTAHGHS----RRVIETLEMIKADY-PDLPVVA-GNVATPEGTEALIKAGADAVKVG 167 (330)
T ss_dssp HHHHHHHHHTTCSEEEECCSCCSS----HHHHHHHHHHHHHC-TTSCEEE-EEECSHHHHHHHHHTTCSEEEEC
T ss_pred HHHHHHHHHCCCCEEEEecCCCCc----hhHHHHHHHHHHhC-CCCCEEe-echhHHHHHHHHHHcCCCEEeec
Confidence 455778899999999986533321 23456677776654 3677776 88999999999889999999775
|
| >d1ofda2 c.1.4.1 (A:431-1239) Alpha subunit of glutamate synthase, central and FMN domains {Synechocystis sp. [TaxId: 1143]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: FMN-linked oxidoreductases family: FMN-linked oxidoreductases domain: Alpha subunit of glutamate synthase, central and FMN domains species: Synechocystis sp. [TaxId: 1143]
Probab=93.35 E-value=0.32 Score=48.95 Aligned_cols=120 Identities=15% Similarity=0.139 Sum_probs=83.6
Q ss_pred HHHHHHHHcCCcEEEEcCCC-CCCCCC---ccchHHHHHHHHHHh-----cCCCcEEE-ecCCCCHHHHHHHHHcCCCEE
Q 017718 234 EDARIAVQAGAAGIIVSNHG-ARQLDY---VPATIMALEEVVKAT-----QGRIPVFL-DGGVRRGTDVFKALALGASGI 303 (367)
Q Consensus 234 ~~a~~~~~~G~d~i~vs~~g-g~~~~~---~~~~~~~l~~i~~~~-----~~~~~via-~GGI~~~~dv~kal~lGAd~V 303 (367)
++|..+++.|+..|++|..+ +...+. ..|.+-++..+..++ +.++-||+ +|.+++.-|++-.+-.||++|
T Consensus 155 ~ea~~AV~~G~~ilILSDR~~~~~i~~~~~~IP~lLAv~AVH~~Lir~gLR~~~sLVveSGe~revHh~A~LiGyGA~AV 234 (809)
T d1ofda2 155 KTAIATVQAGAEILVLTDRPNGAILTENQSFIPPLLAVGAVHHHLIRAGLRLKASLIVDTAQCWSTHHFACLVGYGASAI 234 (809)
T ss_dssp HHHHHHHHTTCSEEEEESSGGGCCCCTTEEECCHHHHHHHHHHHHHHTTCGGGCEEEEECSSCCSHHHHHHHHHTTCSEE
T ss_pred HHHHHHHHCCCcEEEEeccccccccCCCccchhHHHHHHHHHHHHHHcCCCceeeeeeehHHHHHHHHhHHHHhccHHHH
Confidence 44778899999999999865 222222 234444444444332 34677777 788999999999999999999
Q ss_pred EechHH--HHHhh---------ccC-------hHHHHHHHHHHHHHHHHHHHHhCCCChhhhccccee
Q 017718 304 FIGRPV--VYSLA---------AEG-------EKGVRRVLEMLREEFELAMALSGCRSLKEITRDHIV 353 (367)
Q Consensus 304 ~ig~~~--l~~l~---------~~G-------~~~v~~~i~~l~~el~~~m~~~G~~si~~l~~~~l~ 353 (367)
.=.-++ +.-+. ..| ++.+.++...+.+.|...|..+|.++++.-++.-+.
T Consensus 235 nPYLA~eti~~~~~~~~~~~~~~~~~~~~~~~~~a~~Ny~kAi~kGLLKIMSKMGISTl~SYrGaqiF 302 (809)
T d1ofda2 235 CPYLALESVRQWWLDEKTQKLMENGRLDRIDLPTALKNYRQSVEAGLFKILSKMGISLLASYHGAQIF 302 (809)
T ss_dssp ECHHHHHHHHHHHSCHHHHHHHTTSSCCCCCHHHHHHHHHHHHHHHHHHHHHHTTCCBHHHHHTCCCE
T ss_pred hHHHHHHHHHHHhhhhhhhhhhhccCcccCCHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhccchh
Confidence 633222 11111 111 246889999999999999999999999998877554
|
| >d1hl2a_ c.1.10.1 (A:) N-acetylneuraminate lyase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Aldolase family: Class I aldolase domain: N-acetylneuraminate lyase species: Escherichia coli [TaxId: 562]
Probab=93.28 E-value=0.12 Score=45.77 Aligned_cols=89 Identities=16% Similarity=0.177 Sum_probs=54.7
Q ss_pred HHHHHHcCCcEEEEcCCCCCCCCCccc-hHHHHHHHHHHhcCCCcEEEecCCCCHHHHHH----HHHcCCCEEEechHHH
Q 017718 236 ARIAVQAGAAGIIVSNHGARQLDYVPA-TIMALEEVVKATQGRIPVFLDGGVRRGTDVFK----ALALGASGIFIGRPVV 310 (367)
Q Consensus 236 a~~~~~~G~d~i~vs~~gg~~~~~~~~-~~~~l~~i~~~~~~~~~via~GGI~~~~dv~k----al~lGAd~V~ig~~~l 310 (367)
++.+.+.|+++|.+.++.|-...-... -.+.+..+++.+++++|+|+.-+=.+..++.+ +-.+|||++++-.|+.
T Consensus 29 i~~l~~~Gv~gi~~~G~tGE~~~Ls~eEr~~l~~~~~~~~~~~~pvi~gv~~~s~~~~i~~a~~a~~~Gad~~~v~~p~~ 108 (295)
T d1hl2a_ 29 VQFNIQQGIDGLYVGGSTGEAFVQSLSEREQVLEIVAEEAKGKIKLIAHVGCVSTAESQQLAASAKRYGFDAVSAVTPFY 108 (295)
T ss_dssp HHHHHHHTCSEEEESSGGGTGGGSCHHHHHHHHHHHHHHHTTTSEEEEECCCSSHHHHHHHHHHHHHHTCSEEEEECCCS
T ss_pred HHHHHHcCCCEEEECeEccchhhCCHHHHHHHHhhhHHhhccccceeeccccchhhHHHHHHHHHHhcCCceeeeeeccc
Confidence 456678999999996654422111111 23445555666777899998555555665553 3347999999999876
Q ss_pred HHhhccChHHHHHHHHH
Q 017718 311 YSLAAEGEKGVRRVLEM 327 (367)
Q Consensus 311 ~~l~~~G~~~v~~~i~~ 327 (367)
+. ...+++.+.+..
T Consensus 109 ~~---~~~~~~~~~~~~ 122 (295)
T d1hl2a_ 109 YP---FSFEEHCDHYRA 122 (295)
T ss_dssp SC---CCHHHHHHHHHH
T ss_pred cC---CChHHHHHHHHH
Confidence 53 134444444433
|
| >d1xkya1 c.1.10.1 (A:1-292) Dihydrodipicolinate synthase {Bacillus anthracis [TaxId: 1392]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Aldolase family: Class I aldolase domain: Dihydrodipicolinate synthase species: Bacillus anthracis [TaxId: 1392]
Probab=93.17 E-value=2.4 Score=36.70 Aligned_cols=183 Identities=17% Similarity=0.249 Sum_probs=102.4
Q ss_pred ceEeCcccchhccCChhhHHHHHHHHHcCCceee--c---CCCCCCHHHHH-------hh-CC-CceEEEEeecCCHHHH
Q 017718 73 PIMIAPTAMQKMAHPEGEYATARAASAAGTIMTL--S---SWSTSSVEEVA-------ST-GP-GIRFFQLYVYKDRNVV 138 (367)
Q Consensus 73 Pi~iAPm~~~~l~~~~~e~~~a~aa~~~G~~~~v--s---~~~~~~~e~i~-------~~-~~-~~~~~QLy~~~d~~~~ 138 (367)
|.++.|+.-..-.+.++-....+-+.+.|+...+ + +....+.+|.. +. .+ .+.+++.. ...-+.+
T Consensus 9 ~a~~TPf~~d~~iD~~~~~~~i~~l~~~Gv~gl~~~G~tGE~~~Ls~~Er~~l~~~~~~~~~~~~~vi~gv~-~~s~~~~ 87 (292)
T d1xkya1 9 TAMVTPFDINGNIDFAKTTKLVNYLIDNGTTAIVVGGTTGESPTLTSEEKVALYRHVVSVVDKRVPVIAGTG-SNNTHAS 87 (292)
T ss_dssp EECCCCBCTTSSBCHHHHHHHHHHHHHTTCCEEEESSTTTTGGGSCHHHHHHHHHHHHHHHTTSSCEEEECC-CSCHHHH
T ss_pred eeeeCCcCCCcCcCHHHHHHHHHHHHHCCCCEEEECeEccchhhCCHHHHHHHHHHHHHHhCCCceEEEecC-cccHHHH
Confidence 5566676433323334445677777778876443 2 23445666532 22 22 46777765 4456667
Q ss_pred HHHHHHHHHcCCcEEEEecCCCCCCchhHHhhhhcCCCCccccccccccccCccccccchhhHHHhhhccCccccHHHHH
Q 017718 139 AQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLTLKNFQGLDLGKMDEANDSGLAAYVAGQIDRSLSWKWLQ 218 (367)
Q Consensus 139 ~~~l~ra~~~G~~ai~itvd~p~~g~r~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~l~ 218 (367)
.++.+.|+++|++++.+.. |.. ... ....+.+ -++.+.
T Consensus 88 i~~a~~a~~~Gad~ilv~p--P~~-----------------~~~-------------s~~~i~~----------~~~~v~ 125 (292)
T d1xkya1 88 IDLTKKATEVGVDAVMLVA--PYY-----------------NKP-------------SQEGMYQ----------HFKAIA 125 (292)
T ss_dssp HHHHHHHHHTTCSEEEEEC--CCS-----------------SCC-------------CHHHHHH----------HHHHHH
T ss_pred HHHHHHHHHcCCCEEEECC--CCC-----------------CCC-------------CHHHHHH----------HHHHHh
Confidence 7889999999999998732 221 000 0000000 123666
Q ss_pred hhcCCCEEEEec-------CCHHHHHHHHHcCCcEEEEcCCCCCCCCCccchHHHHHHHHHHhcCCCcEEEecCCCCHHH
Q 017718 219 TITKLPILVKGV-------LTAEDARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTD 291 (367)
Q Consensus 219 ~~~~~Pv~vK~v-------~~~~~a~~~~~~G~d~i~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~~~via~GGI~~~~d 291 (367)
+.+++|+++=.. .+.+...++.+.. ..+-+=..+ ........+.+....+..++ .|+ ...
T Consensus 126 ~~~~~pi~iYn~P~~~~~~~~~~~~~~l~~~p-~v~giK~~~--------~~~~~~~~~~~~~~~~~~v~-~G~---~~~ 192 (292)
T d1xkya1 126 ESTPLPVMLYNVPGRSIVQISVDTVVRLSEIE-NIVAIKDAG--------GDVLTMTEIIEKTADDFAVY-SGD---DGL 192 (292)
T ss_dssp HTCSSCEEEEECHHHHSSCCCHHHHHHHHTST-TEEEEEECS--------SCHHHHHHHHHHSCTTCEEE-ESS---GGG
T ss_pred ccCCCcEEEEeCCcccCCccCHHHHhhhccCC-CEEEEeccc--------cchhhhheeeeecCCCCEEE-ECC---ccc
Confidence 778999998653 5667766665532 222221111 22334445555555556555 343 345
Q ss_pred HHHHHHcCCCEEEechHHHH
Q 017718 292 VFKALALGASGIFIGRPVVY 311 (367)
Q Consensus 292 v~kal~lGAd~V~ig~~~l~ 311 (367)
....+.+|+++++.|...++
T Consensus 193 ~~~~~~~G~~G~~~~~~n~~ 212 (292)
T d1xkya1 193 TLPAMAVGAKGIVSVASHVI 212 (292)
T ss_dssp HHHHHHTTCCEEEESTHHHH
T ss_pred cchHHHcCCCccccchhhHH
Confidence 67788899999999986544
|
| >d1km4a_ c.1.2.3 (A:) Orotidine 5'-monophosphate decarboxylase (OMP decarboxylase) {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Ribulose-phoshate binding barrel family: Decarboxylase domain: Orotidine 5'-monophosphate decarboxylase (OMP decarboxylase) species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]
Probab=92.75 E-value=0.11 Score=44.06 Aligned_cols=95 Identities=19% Similarity=0.175 Sum_probs=57.3
Q ss_pred HHHHhhcCCCEE--EEecCC----HHHHHHHHHcCCcEEEEcCCCCCC---------------------CC---------
Q 017718 215 KWLQTITKLPIL--VKGVLT----AEDARIAVQAGAAGIIVSNHGARQ---------------------LD--------- 258 (367)
Q Consensus 215 ~~l~~~~~~Pv~--vK~v~~----~~~a~~~~~~G~d~i~vs~~gg~~---------------------~~--------- 258 (367)
+.+++..+.||+ .|..-- ...++.+.++|+|.++|+..+|.. +.
T Consensus 47 ~~l~~~~~~~i~~D~K~~DIg~t~~~~~~~~~~~gad~~TVh~~~g~~~i~~~~~~a~~~~~~~~~l~~~s~~~~~~~~~ 126 (212)
T d1km4a_ 47 AEFRKRFGCRIIADFAVADIPETNEKICRATFKAGADAIIVHGFPGADSVRACLNVAEEMGREVFLLTEMSHPGAEMFIQ 126 (212)
T ss_dssp HHHHHHHCCEEEEEEEECSCHHHHHHHHHHHHHTTCSEEEEESTTCHHHHHHHHHHHHHHTCEEEEECSCSSGGGGTTHH
T ss_pred HHHHHhcccceehhhhhhccccHHHHhHhhhccccccEEEEeccCChHHHHHHHHHHHhcCCccccchhhcchhhhhhhh
Confidence 356666788887 454421 234677789999999998765520 00
Q ss_pred -------------------CccchHHHHHHHHHHhcCCCcEEEecCCCC-HHHHHHHHHcCCCEEEechHHHH
Q 017718 259 -------------------YVPATIMALEEVVKATQGRIPVFLDGGVRR-GTDVFKALALGASGIFIGRPVVY 311 (367)
Q Consensus 259 -------------------~~~~~~~~l~~i~~~~~~~~~via~GGI~~-~~dv~kal~lGAd~V~ig~~~l~ 311 (367)
++....+.+..+++..+ .-.++.++||+. +.+...++ .|||.+.+||++..
T Consensus 127 ~~~~~~~~~~~~~g~~g~v~~~~~~~~i~~ir~~~~-~~~~~vtpGI~~~g~~~~d~~-~~ad~iIvGR~I~~ 197 (212)
T d1km4a_ 127 GAADEIARMGVDLGVKNYVGPSTRPERLSRLREIIG-QDSFLISPGVGAQGGDPGETL-RFADAIIVGRSIYL 197 (212)
T ss_dssp HHHHHHHHHHHHHTCCEEECCTTCHHHHHHHHHHHC-SSSEEEECCBSTTSBCHHHHT-TTCSEEEECHHHHT
T ss_pred hHHHHHHHHHHHhCCccccccccCHHHHhhhhhccC-CceeEEcCccccCCCCHHHHH-hhCCEEEECchhcc
Confidence 01112233444544443 345678899974 22333333 48999999999874
|
| >d1f74a_ c.1.10.1 (A:) N-acetylneuraminate lyase {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Aldolase family: Class I aldolase domain: N-acetylneuraminate lyase species: Haemophilus influenzae [TaxId: 727]
Probab=92.56 E-value=0.19 Score=44.40 Aligned_cols=73 Identities=14% Similarity=0.212 Sum_probs=48.2
Q ss_pred HHHHHc-CCcEEEEcCCCCCCCCCccc---hHHHHHHHHHHhcCCCcEEEecCCCCHHHHHH----HHHcCCCEEEechH
Q 017718 237 RIAVQA-GAAGIIVSNHGARQLDYVPA---TIMALEEVVKATQGRIPVFLDGGVRRGTDVFK----ALALGASGIFIGRP 308 (367)
Q Consensus 237 ~~~~~~-G~d~i~vs~~gg~~~~~~~~---~~~~l~~i~~~~~~~~~via~GGI~~~~dv~k----al~lGAd~V~ig~~ 308 (367)
+.+.+. |+++|.+.++.|-. ...+ -.+++..+++..++++||++.-|=.+..|+++ +-.+|||++++..|
T Consensus 31 ~~li~~~Gv~gi~v~GttGE~--~~Ls~~Er~~l~~~~~~~~~~~~~vi~gv~~~s~~~~iela~~a~~~Gad~i~~~pP 108 (293)
T d1f74a_ 31 RHNIDKMKVDGLYVGGSTGEN--FMLSTEEKKEIFRIAKDEAKDQIALIAQVGSVNLKEAVELGKYATELGYDCLSAVTP 108 (293)
T ss_dssp HHHHHTSCCSEEEESSGGGTG--GGSCHHHHHHHHHHHHHHHTTSSEEEEECCCSCHHHHHHHHHHHHHHTCSEEECCCC
T ss_pred HHHHHhCCCCEEEECccCcch--hhCCHHHHhhhhheeeccccCccccccccccccHHHHHHHHHHHHHcCCCEeeccCc
Confidence 445555 99999996543321 1222 23445555666777899998655566677664 33479999999998
Q ss_pred HHH
Q 017718 309 VVY 311 (367)
Q Consensus 309 ~l~ 311 (367)
+.+
T Consensus 109 ~~~ 111 (293)
T d1f74a_ 109 FYY 111 (293)
T ss_dssp CSS
T ss_pred ccc
Confidence 876
|
| >d2p10a1 c.1.12.9 (A:8-204) Uncharacterized protein Mll9387 {Mesorhizobium loti [TaxId: 381]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Phosphoenolpyruvate/pyruvate domain family: Mll9387-like domain: Uncharacterized protein Mll9387 species: Mesorhizobium loti [TaxId: 381]
Probab=92.53 E-value=0.12 Score=43.53 Aligned_cols=83 Identities=19% Similarity=0.164 Sum_probs=53.0
Q ss_pred CCCEEEEecCCHHHHHHHHHcCCcEEEEcCCC-----CCCCCCc-----cch---HHHHHHHHHHhcCCCcEEEecC---
Q 017718 222 KLPILVKGVLTAEDARIAVQAGAAGIIVSNHG-----ARQLDYV-----PAT---IMALEEVVKATQGRIPVFLDGG--- 285 (367)
Q Consensus 222 ~~Pv~vK~v~~~~~a~~~~~~G~d~i~vs~~g-----g~~~~~~-----~~~---~~~l~~i~~~~~~~~~via~GG--- 285 (367)
+.||++-++.+.-.|+.++++|+|+|.+++.| |..-..+ ... ++...++...+ .++|||+|.+
T Consensus 19 ~~~l~~~g~~d~lsAklae~aGfdai~~~~~g~~~s~g~~~~~g~l~~~d~~~~~~~~a~~i~~~v-~~iPviaD~dG~g 97 (197)
T d2p10a1 19 GEPIIGGGAGTGLSAKSEEAGDIDLIVIYNSGRYRMAGRGSLAGLLAYGNANQIVVDMAREVLPVV-RHTPVLAGVNGTD 97 (197)
T ss_dssp TCCEEEEEESSHHHHHHHHHTTCSEEEECHHHHHHHTTCCGGGGGBTEEEHHHHHHHHHHHHGGGC-SSSCEEEEECTTC
T ss_pred CCCEEEcccccHHHHHHHHHcCCCEEEEecHHHHHHcCCcccccccChhHHHHHHHHHHHHHHHhc-ccCceEEecCCCC
Confidence 67999999999999999999999999997643 1111111 111 22222332222 2699999653
Q ss_pred -CCCHHHHH-HHHHcCCCEEEe
Q 017718 286 -VRRGTDVF-KALALGASGIFI 305 (367)
Q Consensus 286 -I~~~~dv~-kal~lGAd~V~i 305 (367)
..+-...+ ++..+|+.+|++
T Consensus 98 ~~~nv~rtv~~~~~aG~agI~~ 119 (197)
T d2p10a1 98 PFMVMSTFLRELKEIGFAGVQN 119 (197)
T ss_dssp TTCCHHHHHHHHHHHTCCEEEE
T ss_pred cchhHHHHHHHHHHcCCeEEec
Confidence 33444433 444589999986
|
| >d1y0ea_ c.1.2.5 (A:) Putative N-acetylmannosamine-6-phosphate 2-epimerase NanE {Staphylococcus aureus [TaxId: 1280]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Ribulose-phoshate binding barrel family: NanE-like domain: Putative N-acetylmannosamine-6-phosphate 2-epimerase NanE species: Staphylococcus aureus [TaxId: 1280]
Probab=92.52 E-value=0.65 Score=38.38 Aligned_cols=70 Identities=10% Similarity=-0.054 Sum_probs=47.5
Q ss_pred CHHHHHHHHHcCCcEEEEcCCCCCCCCCccchHHHHHHHHHHhcCCCcEEEecCCCCHHHHHHHHHcCCCEEEec
Q 017718 232 TAEDARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFIG 306 (367)
Q Consensus 232 ~~~~a~~~~~~G~d~i~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~~~via~GGI~~~~dv~kal~lGAd~V~ig 306 (367)
..+..+.+.++|+|.+.+...-. ........+.+..+.+. ...++..+++.+..++.++...|+|++.++
T Consensus 77 ~~~~~~~~~~agad~v~~~~~~~--~~~~~~~~~~~~~~~~~---~~~~~v~~~~~t~~~a~~~~~~g~d~i~~~ 146 (222)
T d1y0ea_ 77 TSKEVDELIESQCEVIALDATLQ--QRPKETLDELVSYIRTH---APNVEIMADIATVEEAKNAARLGFDYIGTT 146 (222)
T ss_dssp SHHHHHHHHHHTCSEEEEECSCS--CCSSSCHHHHHHHHHHH---CTTSEEEEECSSHHHHHHHHHTTCSEEECT
T ss_pred cHHHHHhHHHcCCCEEEeecccc--ccccchHHHHHHHHHHh---CCceEEeecCCCHHHHHHHHHcCCCeEEEe
Confidence 46778888999999998853211 11222234445555443 233455677999999999999999999865
|
| >d1geqa_ c.1.2.4 (A:) Trp synthase alpha-subunit {Archaeon Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Ribulose-phoshate binding barrel family: Tryptophan biosynthesis enzymes domain: Trp synthase alpha-subunit species: Archaeon Pyrococcus furiosus [TaxId: 2261]
Probab=92.24 E-value=0.38 Score=41.74 Aligned_cols=36 Identities=19% Similarity=0.230 Sum_probs=31.6
Q ss_pred HHHHhhcCCCEEEEec-CCHHHHHHHHHcCCcEEEEc
Q 017718 215 KWLQTITKLPILVKGV-LTAEDARIAVQAGAAGIIVS 250 (367)
Q Consensus 215 ~~l~~~~~~Pv~vK~v-~~~~~a~~~~~~G~d~i~vs 250 (367)
+++|+.+++|+.+... .++++++.+.+.|||+++|.
T Consensus 184 ~~vk~~t~~Pv~vGFGI~~~e~v~~~~~~~ADGvIVG 220 (248)
T d1geqa_ 184 RRAKRICRNKVAVGFGVSKREHVVSLLKEGANGVVVG 220 (248)
T ss_dssp HHHHHHCSSCEEEESCCCSHHHHHHHHHTTCSEEEEC
T ss_pred HHHhhhcccceeeecccCCHHHHHHHHhcCCCEEEEC
Confidence 4899999999999754 68999999999999999993
|
| >d1rvga_ c.1.10.2 (A:) Fructose-bisphosphate aldolase (FBP aldolase) {Thermus aquaticus [TaxId: 271]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Aldolase family: Class II FBP aldolase domain: Fructose-bisphosphate aldolase (FBP aldolase) species: Thermus aquaticus [TaxId: 271]
Probab=91.90 E-value=2.2 Score=37.82 Aligned_cols=110 Identities=26% Similarity=0.321 Sum_probs=76.2
Q ss_pred CCHHHHHH-HHHcCCcEEEEcC---CCCCCCCCcc-chHHHHHHHHHHhcCCCcEEEecCC-------------------
Q 017718 231 LTAEDARI-AVQAGAAGIIVSN---HGARQLDYVP-ATIMALEEVVKATQGRIPVFLDGGV------------------- 286 (367)
Q Consensus 231 ~~~~~a~~-~~~~G~d~i~vs~---~gg~~~~~~~-~~~~~l~~i~~~~~~~~~via~GGI------------------- 286 (367)
.++++|+. +.+.|+|.+-++. ||-+.....+ -.++.|.+|.+.+ ++|+..-||=
T Consensus 153 T~peea~~Fv~~TgvD~LAvaiGn~HG~Yk~~~~~~l~~~~l~~I~~~~--~~PLVlHGgS~vp~~~~~~~~~~g~~lhg 230 (305)
T d1rvga_ 153 TNPEEARIFMERTGADYLAVAIGTSHGAYKGKGRPFIDHARLERIARLV--PAPLVLHGASAVPPELVERFRASGGEIGE 230 (305)
T ss_dssp CCHHHHHHHHHHHCCSEEEECSSCCSSSBCSSSSCCCCHHHHHHHHHHC--CSCEEECSCCCCCHHHHHHHHHTTCCCCS
T ss_pred CCHHHHHHHHHHhCccHhhhhhhhhhcccCCCCcccchHHHHHHHHhcc--CCCeeccCCccccHHHHhhhcccCcccCC
Confidence 57888887 4578999999974 5543322222 4678899999887 7999987753
Q ss_pred ---CCHHHHHHHHHcCCCEEEechHHHHHhhc-------cC-----h-HHHHHHHHHHHHHHHHHHHHhCCC
Q 017718 287 ---RRGTDVFKALALGASGIFIGRPVVYSLAA-------EG-----E-KGVRRVLEMLREEFELAMALSGCR 342 (367)
Q Consensus 287 ---~~~~dv~kal~lGAd~V~ig~~~l~~l~~-------~G-----~-~~v~~~i~~l~~el~~~m~~~G~~ 342 (367)
...+|+.+++..|..-|-++|-+..+... +. + .-.....+.+++-++..|+.+|..
T Consensus 231 ~sG~~~e~i~~ai~~GV~KiNi~T~l~~a~~~~~~~~l~~~~~~~d~~~~~~~~~~a~~~~v~~~i~~fgS~ 302 (305)
T d1rvga_ 231 AAGIHPEDIKKAISLGIAKINTDTDLRLAFTALIREALNKNPKEFDPRKYLGPAREAVKEVVKSRMELFGSV 302 (305)
T ss_dssp CBCCCHHHHHHHHHTTEEEEEECHHHHHHHHHHHHHHHHHCTTCCCTHHHHHHHHHHHHHHHHHHHHHHTCT
T ss_pred CCCCCHHHHHHHHHcCeEEEEeChHHHHHHHHHHHHHHHhCcCcCCHHHHHHHHHHHHHHHHHHHHHHhCCC
Confidence 34688999999999999999976543210 11 1 113344566777777778888764
|
| >d1yxya1 c.1.2.5 (A:4-233) Putative N-acetylmannosamine-6-phosphate 2-epimerase NanE {Streptococcus pyogenes [TaxId: 1314]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Ribulose-phoshate binding barrel family: NanE-like domain: Putative N-acetylmannosamine-6-phosphate 2-epimerase NanE species: Streptococcus pyogenes [TaxId: 1314]
Probab=91.85 E-value=0.47 Score=39.70 Aligned_cols=72 Identities=10% Similarity=-0.092 Sum_probs=50.2
Q ss_pred CHHHHHHHHHcCCcEEEEcCCCCCCCCCccchHHHHHHHHHHhcCCCcEEEecCCCCHHHHHHHHHcCCCEEEech
Q 017718 232 TAEDARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFIGR 307 (367)
Q Consensus 232 ~~~~a~~~~~~G~d~i~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~~~via~GGI~~~~dv~kal~lGAd~V~ig~ 307 (367)
..+....+..+|+|.+.+...-+. .......++.+.++.... .. ++..+++.|.+++.++..+|||.+.++.
T Consensus 87 ~~~~~~~~~~~gad~i~~~~~~~~-~~~~~~~~~~~~~~~~~~--~~-~~v~~~v~t~~~a~~a~~~Gad~i~~~~ 158 (230)
T d1yxya1 87 TMTEVDQLAALNIAVIAMDCTKRD-RHDGLDIASFIRQVKEKY--PN-QLLMADISTFDEGLVAHQAGIDFVGTTL 158 (230)
T ss_dssp SHHHHHHHHTTTCSEEEEECCSSC-CTTCCCHHHHHHHHHHHC--TT-CEEEEECSSHHHHHHHHHTTCSEEECTT
T ss_pred hHHHHHHHHhcCCCEEEEeccccc-ccchhhHHHHHHHHHhcC--CC-ceEecCCCCHHHHHHHHhcCCCEEEeec
Confidence 467788899999999988653221 122334556666665543 22 3444579999999999999999998765
|
| >d1pvna1 c.1.5.1 (A:2-99,A:231-494) Inosine monophosphate dehydrogenase (IMPDH) {Tritrichomonas foetus [TaxId: 5724]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Inosine monophosphate dehydrogenase (IMPDH) family: Inosine monophosphate dehydrogenase (IMPDH) domain: Inosine monophosphate dehydrogenase (IMPDH) species: Tritrichomonas foetus [TaxId: 5724]
Probab=91.85 E-value=0.2 Score=46.13 Aligned_cols=69 Identities=19% Similarity=0.162 Sum_probs=52.0
Q ss_pred HHHHHHHHHcCCcEEEEcCCCCCCCCCccchHHHHHHHHHHhcCCCcEEEecCCCCHHHHHHHHHcCCCEEEec
Q 017718 233 AEDARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFIG 306 (367)
Q Consensus 233 ~~~a~~~~~~G~d~i~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~~~via~GGI~~~~dv~kal~lGAd~V~ig 306 (367)
.+.++.+.++|+|.|++..+.|+. ....+.+..+++.....+||++ |.|.|++.+...+..|||+|-+|
T Consensus 112 ~~~~~~L~~ag~d~i~IDvAhG~~----~~v~~~i~~ir~~~~~~~~IiA-GNVaT~e~~~~L~~aGaD~vkVG 180 (362)
T d1pvna1 112 RERVPALVEAGADVLCIDSSDGFS----EWQKITIGWIREKYGDKVKVGA-GNIVDGEGFRYLADAGADFIKIG 180 (362)
T ss_dssp HHHHHHHHHHTCSEEEECCSCCCB----HHHHHHHHHHHHHHGGGSCEEE-EEECSHHHHHHHHHHTCSEEEEC
T ss_pred HHHHHHHhhcCceEEeechhccch----hHHHHHHHHHHHhhccceeeec-ccccCHHHHHHHHHhCCcEEEec
Confidence 345778899999999997644432 2244566667655544677765 89999999999999999999888
|
| >d1s2wa_ c.1.12.7 (A:) Phosphoenolpyruvate mutase {Blue mussel (Mytilus edulis) [TaxId: 6550]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Phosphoenolpyruvate/pyruvate domain family: Phosphoenolpyruvate mutase/Isocitrate lyase-like domain: Phosphoenolpyruvate mutase species: Blue mussel (Mytilus edulis) [TaxId: 6550]
Probab=91.76 E-value=0.35 Score=42.64 Aligned_cols=84 Identities=25% Similarity=0.240 Sum_probs=57.3
Q ss_pred CCCEEEEecCCHHHHHHHHHcCCcEEEEcCCCC---C-CCCCccc----hHHHHHHHHHHhcCCCcEEEec--CCCCHHH
Q 017718 222 KLPILVKGVLTAEDARIAVQAGAAGIIVSNHGA---R-QLDYVPA----TIMALEEVVKATQGRIPVFLDG--GVRRGTD 291 (367)
Q Consensus 222 ~~Pv~vK~v~~~~~a~~~~~~G~d~i~vs~~gg---~-~~~~~~~----~~~~l~~i~~~~~~~~~via~G--GI~~~~d 291 (367)
+-|+++-++-+.-.|+.+.++|+++|.+|+++= . ..|.+.- ..+.++.|.+.+ ++||++|. |..++.+
T Consensus 15 ~~~~~~p~~~Da~SAr~~e~aGf~a~~~ss~~~aas~G~pD~~~lt~~e~~~~~~~I~~~~--~lPv~~D~d~GyG~~~~ 92 (275)
T d1s2wa_ 15 KDLEFIMEAHNGLSARIVQEAGFKGIWGSGLSVSAQLGVRDSNEASWTQVVEVLEFMSDAS--DVPILLDADTGYGNFNN 92 (275)
T ss_dssp SSCEEEEEECSHHHHHHHHHHTCSCEEECCHHHHHTC---------CHHHHHHHHHHHHTC--SSCEEEECCSSCSSHHH
T ss_pred CCCEEeecCcCHHHHHHHHHcCCCEEEhhHHHHHHHcCCCCCCccchhhHHHHHHhhhccc--CCceeEecccccccchH
Confidence 568888899999999999999999999987431 0 1233322 223455555554 89999965 6777776
Q ss_pred HH----HHHHcCCCEEEech
Q 017718 292 VF----KALALGASGIFIGR 307 (367)
Q Consensus 292 v~----kal~lGAd~V~ig~ 307 (367)
+. ++...||.+|.|=-
T Consensus 93 v~~tv~~~~~aGaagi~iED 112 (275)
T d1s2wa_ 93 ARRLVRKLEDRGVAGACLED 112 (275)
T ss_dssp HHHHHHHHHHTTCCEEEEEC
T ss_pred HHHHHHHHHHhccceeEeec
Confidence 65 44557999998754
|
| >d1vc4a_ c.1.2.4 (A:) Indole-3-glycerophosphate synthase, IPGS {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Ribulose-phoshate binding barrel family: Tryptophan biosynthesis enzymes domain: Indole-3-glycerophosphate synthase, IPGS species: Thermus thermophilus [TaxId: 274]
Probab=91.36 E-value=0.61 Score=40.51 Aligned_cols=71 Identities=21% Similarity=0.213 Sum_probs=56.1
Q ss_pred HHHHHHHHHcCCcEEEEcCCCCCCCCCccchHHHHHHHHHHhcCCCcEEEecCCCCHHHHHHHHHcCCCEEEechHH
Q 017718 233 AEDARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFIGRPV 309 (367)
Q Consensus 233 ~~~a~~~~~~G~d~i~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~~~via~GGI~~~~dv~kal~lGAd~V~ig~~~ 309 (367)
.+.|+...+.||++|.|-.-. .+-...++.|..+++.+ ++||+.--=|.++.++.++..+|||+|.+--.+
T Consensus 68 ~~~A~~y~~~GA~aiSVLTe~----~~F~Gs~~dl~~v~~~~--~iPvLrKDFIid~~QI~ea~~~GADaVLLIaal 138 (254)
T d1vc4a_ 68 VEAALAYARGGARAVSVLTEP----HRFGGSLLDLKRVREAV--DLPLLRKDFVVDPFMLEEARAFGASAALLIVAL 138 (254)
T ss_dssp HHHHHHHHHTTCSEEEEECCC----SSSCCCHHHHHHHHHHC--CSCEEEESCCCSHHHHHHHHHTTCSEEEEEHHH
T ss_pred HHHHHHHHhcCCceEEEEcCc----ccccccHHHHHHHHHHc--CCCcccCCccccHHHHHHHHhccchHHHHHHHH
Confidence 466889999999999985311 11123556677777777 899999999999999999999999999988654
|
| >d1qopa_ c.1.2.4 (A:) Trp synthase alpha-subunit {Salmonella typhimurium [TaxId: 90371]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Ribulose-phoshate binding barrel family: Tryptophan biosynthesis enzymes domain: Trp synthase alpha-subunit species: Salmonella typhimurium [TaxId: 90371]
Probab=90.96 E-value=0.54 Score=41.17 Aligned_cols=36 Identities=33% Similarity=0.374 Sum_probs=31.6
Q ss_pred HHHHhhcCCCEEEEe-cCCHHHHHHHHHcCCcEEEEc
Q 017718 215 KWLQTITKLPILVKG-VLTAEDARIAVQAGAAGIIVS 250 (367)
Q Consensus 215 ~~l~~~~~~Pv~vK~-v~~~~~a~~~~~~G~d~i~vs 250 (367)
+.+|+.+++||++.. +.+++++..+.+.|+|+++|.
T Consensus 198 ~~ik~~t~~Pv~vGFGI~~~e~v~~~~~~~ADGvIVG 234 (267)
T d1qopa_ 198 EKLKEYHAAPALQGFGISSPEQVSAAVRAGAAGAISG 234 (267)
T ss_dssp HHHHHTTCCCEEEESSCCSHHHHHHHHHTTCSEEEEC
T ss_pred HHHhhhccCCceeecccCCHHHHHHHHhcCCCEEEEC
Confidence 489999999999986 478999999899999999994
|
| >d1xm3a_ c.1.31.1 (A:) Thiazole biosynthesis protein ThiG {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: ThiG-like family: ThiG-like domain: Thiazole biosynthesis protein ThiG species: Bacillus subtilis [TaxId: 1423]
Probab=90.94 E-value=0.59 Score=40.18 Aligned_cols=96 Identities=22% Similarity=0.335 Sum_probs=58.0
Q ss_pred CCHHHHHHHHHHHHHcCCcEEEEecCCCCCCchhHHhhhhcCCCCccccccccccccCccccccchhhHHHhhhccCccc
Q 017718 133 KDRNVVAQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLTLKNFQGLDLGKMDEANDSGLAAYVAGQIDRSL 212 (367)
Q Consensus 133 ~d~~~~~~~l~ra~~~G~~ai~itvd~p~~g~r~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~ 212 (367)
.|+..+.+..+...+.||..+-.+-|-|+..+|-.|+--..-+|-+ .. -+++. ......
T Consensus 109 PD~~etl~Aae~Lv~eGF~VlpY~~~D~v~ak~Le~~Gc~avMPlg------sP---------IGSg~------Gl~n~~ 167 (251)
T d1xm3a_ 109 PDPVETLKASEQLLEEGFIVLPYTSDDVVLARKLEELGVHAIMPGA------SP---------IGSGQ------GILNPL 167 (251)
T ss_dssp BCHHHHHHHHHHHHHTTCCEEEEECSCHHHHHHHHHHTCSCBEECS------SS---------TTCCC------CCSCHH
T ss_pred CCHHHHHHHHHHHHhCCcEEEEecCCCHHHHHHHHHcCChhHHHhh------hh---------hhcCC------CcCChH
Confidence 3555555566666667777777777777766665544211111211 00 01100 001111
Q ss_pred cHHHHHhhcCCCEEEEe-cCCHHHHHHHHHcCCcEEEE
Q 017718 213 SWKWLQTITKLPILVKG-VLTAEDARIAVQAGAAGIIV 249 (367)
Q Consensus 213 ~~~~l~~~~~~Pv~vK~-v~~~~~a~~~~~~G~d~i~v 249 (367)
.++.+++..++||||-- +.++.+|..+.|.|+|+|-+
T Consensus 168 ~l~~i~~~~~vPvIvDAGIG~pSdAa~AMElG~daVLv 205 (251)
T d1xm3a_ 168 NLSFIIEQAKVPVIVDAGIGSPKDAAYAMELGADGVLL 205 (251)
T ss_dssp HHHHHHHHCSSCBEEESCCCSHHHHHHHHHTTCSEEEE
T ss_pred HHHHHHhcCCccEEEecCCCCHHHHHHHHHccCCEEEe
Confidence 34577777899998864 57899999999999999987
|
| >d1vhna_ c.1.4.1 (A:) Putative flavin oxidoreducatase TM0096 {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: FMN-linked oxidoreductases family: FMN-linked oxidoreductases domain: Putative flavin oxidoreducatase TM0096 species: Thermotoga maritima [TaxId: 2336]
Probab=90.75 E-value=0.99 Score=40.06 Aligned_cols=85 Identities=25% Similarity=0.423 Sum_probs=56.6
Q ss_pred CCCceEEEEeecCCHHHHHHHHHHHHHcCCcEEEEecCCCCCCchhHHhhhhcCCCCccccccccccccCccccccchhh
Q 017718 121 GPGIRFFQLYVYKDRNVVAQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLTLKNFQGLDLGKMDEANDSGL 200 (367)
Q Consensus 121 ~~~~~~~QLy~~~d~~~~~~~l~ra~~~G~~ai~itvd~p~~g~r~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~ 200 (367)
.+-|..+.+-.+.|.+...+.++.++++|++.+.||--+... ++
T Consensus 121 ~~~pvsvK~RlG~d~~~~~~~~~~l~~~G~~~itvH~Rt~~q---------~~--------------------------- 164 (305)
T d1vhna_ 121 VSGKFSVKTRLGWEKNEVEEIYRILVEEGVDEVFIHTRTVVQ---------SF--------------------------- 164 (305)
T ss_dssp CSSEEEEEEESCSSSCCHHHHHHHHHHTTCCEEEEESSCTTT---------TT---------------------------
T ss_pred cccccccccccCcccchhhHHHHHHHHhCCcEEEechhhhhh---------cc---------------------------
Confidence 345677777666666666778888899999999887532110 00
Q ss_pred HHHhhhccCccccHHHHHhhc-CCCEEEEe-cCCHHHHHHHHH-cCCcEEEE
Q 017718 201 AAYVAGQIDRSLSWKWLQTIT-KLPILVKG-VLTAEDARIAVQ-AGAAGIIV 249 (367)
Q Consensus 201 ~~~~~~~~d~~~~~~~l~~~~-~~Pv~vK~-v~~~~~a~~~~~-~G~d~i~v 249 (367)
.+..+|+.++... ++||++=| +.+.+++..+.+ .|+|++.+
T Consensus 165 --------~~~a~~~~i~~~~~~ipvi~NGdI~s~~d~~~~l~~tg~dgVMi 208 (305)
T d1vhna_ 165 --------TGRAEWKALSVLEKRIPTFVSGDIFTPEDAKRALEESGCDGLLV 208 (305)
T ss_dssp --------SSCCCGGGGGGSCCSSCEEEESSCCSHHHHHHHHHHHCCSEEEE
T ss_pred --------ccchhhhHHHhhhhhhhhhcccccccHHHHHHHHHhcCCCeEeh
Confidence 1223566333221 68988765 478999988765 69999998
|
| >d1rpxa_ c.1.2.2 (A:) D-ribulose-5-phosphate 3-epimerase {Potato (Solanum tuberosum) [TaxId: 4113]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Ribulose-phoshate binding barrel family: D-ribulose-5-phosphate 3-epimerase domain: D-ribulose-5-phosphate 3-epimerase species: Potato (Solanum tuberosum) [TaxId: 4113]
Probab=90.62 E-value=0.36 Score=41.40 Aligned_cols=78 Identities=14% Similarity=0.259 Sum_probs=49.6
Q ss_pred CCHHHHHHHHHcCCcEEEEcC-CCCC-CCCCccchHHHHHHHHHHh---cCCCcEEEecCCCCHHHHHHHHHcCCCEEEe
Q 017718 231 LTAEDARIAVQAGAAGIIVSN-HGAR-QLDYVPATIMALEEVVKAT---QGRIPVFLDGGVRRGTDVFKALALGASGIFI 305 (367)
Q Consensus 231 ~~~~~a~~~~~~G~d~i~vs~-~gg~-~~~~~~~~~~~l~~i~~~~---~~~~~via~GGI~~~~dv~kal~lGAd~V~i 305 (367)
...+......+. +|.|.+-. ..|. ....-+..++-+.++++.. ..++.|.+||||.. +.+-+...+|||.+.+
T Consensus 129 T~~~~l~~~l~~-vD~VllM~V~PGf~GQ~f~~~~~~kI~~~~~~~~~~~~~~~I~vDGGIn~-~~i~~l~~~Gad~~V~ 206 (230)
T d1rpxa_ 129 TPLTAIEYVLDA-VDLVLIMSVNPGFGGQSFIESQVKKISDLRKICAERGLNPWIEVDGGVGP-KNAYKVIEAGANALVA 206 (230)
T ss_dssp CCGGGGTTTTTT-CSEEEEESSCTTCSSCCCCTTHHHHHHHHHHHHHHHTCCCEEEEESSCCT-TTHHHHHHHTCCEEEE
T ss_pred CCHHHHHHHHhh-CCEEEEEEecCCcccchhhhhhHHHHHHHHHHHHhcCCceEEEEECCcCH-HHHHHHHHcCCCEEEE
Confidence 334555444443 78876632 2222 2233445666666665443 23688999999976 4678888999999999
Q ss_pred chHHH
Q 017718 306 GRPVV 310 (367)
Q Consensus 306 g~~~l 310 (367)
|+.++
T Consensus 207 GS~if 211 (230)
T d1rpxa_ 207 GSAVF 211 (230)
T ss_dssp SHHHH
T ss_pred ChHHH
Confidence 98754
|
| >d1twda_ c.1.30.1 (A:) Copper homeostasis protein CutC {Shigella flexneri [TaxId: 623]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: CutC-like family: CutC-like domain: Copper homeostasis protein CutC species: Shigella flexneri [TaxId: 623]
Probab=90.56 E-value=0.55 Score=40.64 Aligned_cols=71 Identities=27% Similarity=0.320 Sum_probs=53.2
Q ss_pred cCCHHHHHHHHHcCCcEEEEcCC---CCCCCCCccchHHHHHHHHHHhcCCCcEEE-----ecCCC-CHH-------HHH
Q 017718 230 VLTAEDARIAVQAGAAGIIVSNH---GARQLDYVPATIMALEEVVKATQGRIPVFL-----DGGVR-RGT-------DVF 293 (367)
Q Consensus 230 v~~~~~a~~~~~~G~d~i~vs~~---gg~~~~~~~~~~~~l~~i~~~~~~~~~via-----~GGI~-~~~-------dv~ 293 (367)
+.+.++|..|.+.|||-|-+... ||. .|+...+..+++.+ ++||.+ .|++. |.. |+.
T Consensus 7 v~s~~~a~~A~~~GAdRIELc~~l~~GGl-----TPS~g~i~~~~~~~--~iPv~vMIRPR~GdF~Ys~~E~~~M~~di~ 79 (247)
T d1twda_ 7 CYSMECALTAQQNGADRVELCAAPKEGGL-----TPSLGVLKSVRQRV--TIPVHPIIRPRGGDFCYSDGEFAAILEDVR 79 (247)
T ss_dssp ESSHHHHHHHHHTTCSEEEECBCGGGTCB-----CCCHHHHHHHHHHC--CSCEEEBCCSSSSCSCCCHHHHHHHHHHHH
T ss_pred eCCHHHHHHHHHcCCCEEEEcCCcccCCC-----CCCHHHHHHHHHhc--CCCeEEEEecCCCCCCCCHHHHHHHHHHHH
Confidence 36899999999999999998432 443 35677787887776 799988 45543 443 555
Q ss_pred HHHHcCCCEEEech
Q 017718 294 KALALGASGIFIGR 307 (367)
Q Consensus 294 kal~lGAd~V~ig~ 307 (367)
.+..+|||+|.+|-
T Consensus 80 ~~k~~G~dGvV~G~ 93 (247)
T d1twda_ 80 TVRELGFPGLVTGV 93 (247)
T ss_dssp HHHHTTCSEEEECC
T ss_pred HHHHcCCCeEEEEE
Confidence 66679999999994
|
| >d1twda_ c.1.30.1 (A:) Copper homeostasis protein CutC {Shigella flexneri [TaxId: 623]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: CutC-like family: CutC-like domain: Copper homeostasis protein CutC species: Shigella flexneri [TaxId: 623]
Probab=90.50 E-value=0.93 Score=39.15 Aligned_cols=122 Identities=14% Similarity=0.176 Sum_probs=71.7
Q ss_pred eecCCHHHHHHHHHHHHHcCCcEEEEecCCCCCCchhHHhhhhcCCCCccccccccccccCccccccchhhHHHhhhccC
Q 017718 130 YVYKDRNVVAQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLTLKNFQGLDLGKMDEANDSGLAAYVAGQID 209 (367)
Q Consensus 130 y~~~d~~~~~~~l~ra~~~G~~ai~itvd~p~~g~r~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d 209 (367)
|...+-+.+.+-++.+++.|++.+++.+-.+ |
T Consensus 66 Ys~~E~~~M~~di~~~k~~G~dGvV~G~L~~------------------------------------------------d 97 (247)
T d1twda_ 66 YSDGEFAAILEDVRTVRELGFPGLVTGVLDV------------------------------------------------D 97 (247)
T ss_dssp CCHHHHHHHHHHHHHHHHTTCSEEEECCBCT------------------------------------------------T
T ss_pred CCHHHHHHHHHHHHHHHHcCCCeEEEEEECC------------------------------------------------C
Confidence 4444456677788888999999999744321 1
Q ss_pred ccccHH---HHHhh-cCCCEEEEec----CCH-HHHHHHHHcCCcEEEEcCCCCCCCCCccchHHHHHHHHHHhcCCCcE
Q 017718 210 RSLSWK---WLQTI-TKLPILVKGV----LTA-EDARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPV 280 (367)
Q Consensus 210 ~~~~~~---~l~~~-~~~Pv~vK~v----~~~-~~a~~~~~~G~d~i~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~~~v 280 (367)
..++.+ .|.+. -+.|+++=-. .++ +..+.+.+.|++.|-.||... ....-.+.|.++.+... ..-|
T Consensus 98 g~iD~~~~~~L~~~a~~l~vTFHRAfD~~~d~~~al~~Li~lG~~rILTSGg~~----~a~~G~~~L~~L~~~a~-~~iI 172 (247)
T d1twda_ 98 GNVDMPRMEKIMAAAGPLAVTFHRAFDMCANPLYTLNNLAELGIARVLTSGQKS----DALQGLSKIMELIAHRD-APII 172 (247)
T ss_dssp SSBCHHHHHHHHHHHTTSEEEECGGGGGCSCHHHHHHHHHHHTCCEEEECTTSS----STTTTHHHHHHHHTSSS-CCEE
T ss_pred CCccHHHHHHHHHHhcccCeeeehhhhhhCCHHHHHHHHHhcCCCeEeccCCCC----chhHHHHHHHHHHHhcC-CcEE
Confidence 112222 22222 2455544332 233 456788999999998865222 22333455666554333 3348
Q ss_pred EEecCCCCHHHHHHHHHcCCCEEEe
Q 017718 281 FLDGGVRRGTDVFKALALGASGIFI 305 (367)
Q Consensus 281 ia~GGI~~~~dv~kal~lGAd~V~i 305 (367)
++-|||+. +.+.+.+..|++.+=.
T Consensus 173 m~GgGI~~-~Ni~~l~~~g~~e~H~ 196 (247)
T d1twda_ 173 MAGAGVRA-ENLHHFLDAGVLEVHS 196 (247)
T ss_dssp EEESSCCT-TTHHHHHHHTCSEEEE
T ss_pred EecCCCCH-HHHHHHHHcCCCEEEE
Confidence 88888765 4566666779887654
|
| >d1jr1a1 c.1.5.1 (A:17-112,A:233-514) Inosine monophosphate dehydrogenase (IMPDH) {Chinese hamster (Cricetulus griseus) [TaxId: 10029]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Inosine monophosphate dehydrogenase (IMPDH) family: Inosine monophosphate dehydrogenase (IMPDH) domain: Inosine monophosphate dehydrogenase (IMPDH) species: Chinese hamster (Cricetulus griseus) [TaxId: 10029]
Probab=90.44 E-value=0.36 Score=44.51 Aligned_cols=68 Identities=12% Similarity=0.171 Sum_probs=49.3
Q ss_pred HHHHHHHHcCCcEEEEcCCCCCCCCCccchHHHHHHHHHHhcCCCcEEEecCCCCHHHHHHHHHcCCCEEEech
Q 017718 234 EDARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFIGR 307 (367)
Q Consensus 234 ~~a~~~~~~G~d~i~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~~~via~GGI~~~~dv~kal~lGAd~V~ig~ 307 (367)
+.+..+.++|+|.+++...-|+ .....+.+..+++.. .+++|| .|.+.|.+.+.+.+.+|||+|-+|-
T Consensus 122 ~~~~~l~~agv~vi~id~a~g~----~~~~~~~i~~ik~~~-~~~~iI-aGnVaT~e~a~~L~~aGAD~VkVGi 189 (378)
T d1jr1a1 122 YRLDLLALAGVDVVVLDSSQGN----SIFQINMIKYMKEKY-PNLQVI-GGNVVTAAQAKNLIDAGVDALRVGM 189 (378)
T ss_dssp HHHHHHHHHTCCEEEECCSSCC----SHHHHHHHHHHHHHS-TTCEEE-EEEECSHHHHHHHHHHTCSEEEECS
T ss_pred HHHHHHHhhccceEeeeccCcc----chhhHHHHHHHHHHC-CCCcee-ecccccHHHHHHHHHhCCCEEeecc
Confidence 3467788999999999653332 123445566665544 367776 5999999999999999999998874
|
| >d1tqja_ c.1.2.2 (A:) D-ribulose-5-phosphate 3-epimerase {Synechocystis sp. PCC 6803 [TaxId: 1148]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Ribulose-phoshate binding barrel family: D-ribulose-5-phosphate 3-epimerase domain: D-ribulose-5-phosphate 3-epimerase species: Synechocystis sp. PCC 6803 [TaxId: 1148]
Probab=89.73 E-value=0.35 Score=41.18 Aligned_cols=76 Identities=16% Similarity=0.253 Sum_probs=46.7
Q ss_pred HHHHHHHHHcCCcEEEE-cCCCCC-CCCCccchHHHHHHHHHHh---cCCCcEEEecCCCCHHHHHHHHHcCCCEEEech
Q 017718 233 AEDARIAVQAGAAGIIV-SNHGAR-QLDYVPATIMALEEVVKAT---QGRIPVFLDGGVRRGTDVFKALALGASGIFIGR 307 (367)
Q Consensus 233 ~~~a~~~~~~G~d~i~v-s~~gg~-~~~~~~~~~~~l~~i~~~~---~~~~~via~GGI~~~~dv~kal~lGAd~V~ig~ 307 (367)
.+......+ -+|.|.+ +-..|. .....+..++-+.++++.. ..++.|.+||||..- .+-+...+|||.+.+|+
T Consensus 123 ~~~l~~~l~-~~d~vlvM~V~pG~~GQ~f~~~~~~ki~~l~~~~~~~~~~~~I~VDGGIn~~-~i~~l~~~Gad~~V~GS 200 (221)
T d1tqja_ 123 LDFLEYVLP-VCDLILIMSVNPGFGGQSFIPEVLPKIRALRQMCDERGLDPWIEVDGGLKPN-NTWQVLEAGANAIVAGS 200 (221)
T ss_dssp GGGGTTTGG-GCSEEEEESSCC----CCCCGGGHHHHHHHHHHHHHHTCCCEEEEESSCCTT-TTHHHHHHTCCEEEESH
T ss_pred HHHHHHHHh-hhcEEEEEEecCCCCCcccchhhHHHHHHHHhhhhccccceEEEEECCcCHH-HHHHHHHcCCCEEEECh
Confidence 344444333 2666665 222222 2233455666666665543 236889999999753 57778889999999998
Q ss_pred HHH
Q 017718 308 PVV 310 (367)
Q Consensus 308 ~~l 310 (367)
.++
T Consensus 201 ~if 203 (221)
T d1tqja_ 201 AVF 203 (221)
T ss_dssp HHH
T ss_pred HHh
Confidence 754
|
| >d1wa3a1 c.1.10.1 (A:2-203) KDPG aldolase {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Aldolase family: Class I aldolase domain: KDPG aldolase species: Thermotoga maritima [TaxId: 2336]
Probab=89.63 E-value=0.53 Score=39.49 Aligned_cols=71 Identities=23% Similarity=0.142 Sum_probs=52.1
Q ss_pred CCCEEEEecCCHHHHHHHHHcCCcEEEEcCCCCCCCCCccchHHHHHHHHHHhcCCCcEEEecCCCCHHHHHHHHHcCCC
Q 017718 222 KLPILVKGVLTAEDARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGAS 301 (367)
Q Consensus 222 ~~Pv~vK~v~~~~~a~~~~~~G~d~i~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~~~via~GGI~~~~dv~kal~lGAd 301 (367)
++-|.+..+.+.++++.+.++|+++++- .+ .+.+++....+. .+|++ =|+.|+.++.+++.+||+
T Consensus 61 ~~~vGaGTV~~~~~~~~a~~aGa~fivs---P~-------~~~~v~~~~~~~---~i~~i--PGv~TpsEi~~A~~~G~~ 125 (202)
T d1wa3a1 61 GAIIGAGTVTSVEQCRKAVESGAEFIVS---PH-------LDEEISQFCKEK---GVFYM--PGVMTPTELVKAMKLGHT 125 (202)
T ss_dssp TCEEEEESCCSHHHHHHHHHHTCSEEEC---SS-------CCHHHHHHHHHH---TCEEE--CEECSHHHHHHHHHTTCC
T ss_pred CcEEEecccccHHHHHHHHhhcccEEeC---CC-------CcHHHHHHHHhc---CCcee--CCcCcHHHHHHHHHCCCC
Confidence 3556677789999999999999999863 11 123444444332 45554 479999999999999999
Q ss_pred EEEech
Q 017718 302 GIFIGR 307 (367)
Q Consensus 302 ~V~ig~ 307 (367)
.+-+--
T Consensus 126 ~lK~fP 131 (202)
T d1wa3a1 126 ILKLFP 131 (202)
T ss_dssp EEEETT
T ss_pred EEEecc
Confidence 997754
|
| >d1muma_ c.1.12.7 (A:) 2-methylisocitrate lyase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Phosphoenolpyruvate/pyruvate domain family: Phosphoenolpyruvate mutase/Isocitrate lyase-like domain: 2-methylisocitrate lyase species: Escherichia coli [TaxId: 562]
Probab=89.38 E-value=0.73 Score=40.73 Aligned_cols=84 Identities=24% Similarity=0.409 Sum_probs=59.5
Q ss_pred CCCEEEEecCCHHHHHHHHHcCCcEEEEcCCC---C-C-CCCCccch----HHHHHHHHHHhcCCCcEEEec--CCCC-H
Q 017718 222 KLPILVKGVLTAEDARIAVQAGAAGIIVSNHG---A-R-QLDYVPAT----IMALEEVVKATQGRIPVFLDG--GVRR-G 289 (367)
Q Consensus 222 ~~Pv~vK~v~~~~~a~~~~~~G~d~i~vs~~g---g-~-~~~~~~~~----~~~l~~i~~~~~~~~~via~G--GI~~-~ 289 (367)
+-|+.+=++-+.-.|+.+.++|.+++.+|+.+ . . ..|.+.-+ .+.+.+|.+.+ ++|||+|+ |..+ +
T Consensus 15 ~~~~~~~~~~D~~sA~~~e~~Gf~a~~~sg~~~sa~~~G~pD~~~~~~~e~~~~~~~i~~a~--~~Pvi~D~d~GyG~~~ 92 (289)
T d1muma_ 15 ENPLQIVGTINANHALLAQRAGYQAIYLSGGGVAAGSLGLPDLGISTLDDVLTDIRRITDVC--SLPLLVDADIGFGSSA 92 (289)
T ss_dssp CSSEEEEECSSHHHHHHHHHTTCSCEEECHHHHHHTTSCCCSSSCCCHHHHHHHHHHHHHHC--CSCEEEECTTCSSSSH
T ss_pred CCCEEeecCCCHHHHHHHHHcCCCEEEhhHHHHHHHccCCCCCCCCChHHHHHHHHHHhccc--CCCeeecccccccccc
Confidence 67999999999999999999999999997632 1 1 13444433 34456666666 89999976 4443 4
Q ss_pred HHH----HHHHHcCCCEEEech
Q 017718 290 TDV----FKALALGASGIFIGR 307 (367)
Q Consensus 290 ~dv----~kal~lGAd~V~ig~ 307 (367)
..+ .++...|+.+|.|=-
T Consensus 93 ~~v~~~v~~~~~aGvagi~iED 114 (289)
T d1muma_ 93 FNVARTVKSMIKAGAAGLHIED 114 (289)
T ss_dssp HHHHHHHHHHHHHTCSEEEEEC
T ss_pred hHHHHHHHHHHHCCCCEEEecC
Confidence 444 345568999998753
|
| >d1wv2a_ c.1.31.1 (A:) Thiazole biosynthesis protein ThiG {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: ThiG-like family: ThiG-like domain: Thiazole biosynthesis protein ThiG species: Pseudomonas aeruginosa [TaxId: 287]
Probab=88.36 E-value=1.2 Score=38.16 Aligned_cols=36 Identities=33% Similarity=0.533 Sum_probs=30.0
Q ss_pred HHHHHhhcCCCEEEEe-cCCHHHHHHHHHcCCcEEEE
Q 017718 214 WKWLQTITKLPILVKG-VLTAEDARIAVQAGAAGIIV 249 (367)
Q Consensus 214 ~~~l~~~~~~Pv~vK~-v~~~~~a~~~~~~G~d~i~v 249 (367)
.+.+++..++||++-- +.++.||..+.|.|+|+|-+
T Consensus 171 l~~i~~~~~vpvivdAGIg~psdaa~AMElG~dgVLv 207 (243)
T d1wv2a_ 171 LRIILEEAKVPVLVDAGVGTASDAAIAMELGCEAVLM 207 (243)
T ss_dssp HHHHHHHCSSCBEEESCCCSHHHHHHHHHHTCSEEEE
T ss_pred HHhccccCCcceEeecccCCHHHHHHHHHccCCEEEe
Confidence 3456667899998864 58899999999999999987
|
| >d2a6na1 c.1.10.1 (A:1-292) Dihydrodipicolinate synthase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Aldolase family: Class I aldolase domain: Dihydrodipicolinate synthase species: Escherichia coli [TaxId: 562]
Probab=88.31 E-value=4 Score=35.19 Aligned_cols=179 Identities=14% Similarity=0.137 Sum_probs=96.6
Q ss_pred ceEeCcccchhccCChhhHHHHHHHHHcCCcee--ec---CCCCCCHHHHH-------hh-CC-CceEEEEeecCCHHHH
Q 017718 73 PIMIAPTAMQKMAHPEGEYATARAASAAGTIMT--LS---SWSTSSVEEVA-------ST-GP-GIRFFQLYVYKDRNVV 138 (367)
Q Consensus 73 Pi~iAPm~~~~l~~~~~e~~~a~aa~~~G~~~~--vs---~~~~~~~e~i~-------~~-~~-~~~~~QLy~~~d~~~~ 138 (367)
|.++.|+.-..-.+.++-....+-+.+.|+... .+ ++.+.+.+|-. +. .+ .+.+...- ....+..
T Consensus 7 ~a~~TPf~~d~~iD~~~~~~~i~~l~~~Gv~Gl~~~GstGE~~~Ls~~Er~~~~~~~~~~~~~~~~vi~g~~-~~s~~~~ 85 (292)
T d2a6na1 7 VAIVTPMDEKGNVCRASLKKLIDYHVASGTSAIVSVGTTGESATLNHDEHADVVMMTLDLADGRIPVIAGTG-ANATAEA 85 (292)
T ss_dssp EECCCCBCTTSSBCHHHHHHHHHHHHHHTCCEEEESSTTTTGGGSCHHHHHHHHHHHHHHHTTSSCEEEECC-CSSHHHH
T ss_pred eeEECCCCCCCCCCHHHHHHHHHHHHHcCCCEEEECeeccchhhCCHHHHHHHhhhhhhhccccceeEeecc-cchHHHH
Confidence 555666643332333333456666666776633 22 33456776522 22 22 35555543 4455666
Q ss_pred HHHHHHHHHcCCcEEEEecCCCCCCchhHHhhhhcCCCCccccccccccccCccccccchhhHHHhhhccCccc-c-HHH
Q 017718 139 AQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLTLKNFQGLDLGKMDEANDSGLAAYVAGQIDRSL-S-WKW 216 (367)
Q Consensus 139 ~~~l~ra~~~G~~ai~itvd~p~~g~r~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~-~-~~~ 216 (367)
.++.+.|+++|++++.+.. |.. ...+ +..+ . ++.
T Consensus 86 i~~~~~a~~~Gad~~~~~p--P~~-----------------~~~~-------------------------~~~i~~~f~~ 121 (292)
T d2a6na1 86 ISLTQRFNDSGIVGCLTVT--PYY-----------------NRPS-------------------------QEGLYQHFKA 121 (292)
T ss_dssp HHHHHTTTTSSCCEEEEEC--CCS-----------------SCCC-------------------------HHHHHHHHHH
T ss_pred HHHhccHHhcCCcceeccC--CCC-----------------CCCC-------------------------HHHHHHHHHH
Confidence 7788888899999998743 321 0000 0111 2 236
Q ss_pred HHhhcCCCEEEEec-------CCHHHHHHHHHcCCcEEEEcCCCCCCCCCccchHHHHHHHHHHhcCCCcEEEecCCCCH
Q 017718 217 LQTITKLPILVKGV-------LTAEDARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRG 289 (367)
Q Consensus 217 l~~~~~~Pv~vK~v-------~~~~~a~~~~~~G~d~i~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~~~via~GGI~~~ 289 (367)
+.+.+++||++=.. .+++...++.+. +.|+-. .+.. .......++.+..++++.++ .| +.
T Consensus 122 v~~~~~~pi~iYn~P~~~g~~~~~e~~~~L~~~--pnv~gi------K~~~-~~~~~~~~~~~~~~~~~~~~-~g---~~ 188 (292)
T d2a6na1 122 IAEHTDLPQILYNVPSATGCDLLPETVGRLAKV--KNIIGI------KEAT-GNLTRVNQIKELVSDDFVLL-SG---DD 188 (292)
T ss_dssp HHHTCSSCEEEEECHHHHSCCCCHHHHHHHHTS--TTEEEE------EECS-CCTTHHHHHHTTSCTTSEEE-EC---CG
T ss_pred HhhccCCcEEEEEeccccCCccCHHHHHHHhcC--CCEEEE------Eecc-CcchhhhhhhhhcCCccEEe-ec---ch
Confidence 77778999998764 467777777664 222210 0111 11222233333344345444 44 34
Q ss_pred HHHHHHHHcCCCEEEechHH
Q 017718 290 TDVFKALALGASGIFIGRPV 309 (367)
Q Consensus 290 ~dv~kal~lGAd~V~ig~~~ 309 (367)
......+.+||++.+.+...
T Consensus 189 ~~~~~~~~~G~~G~i~~~~~ 208 (292)
T d2a6na1 189 ASALDFMQLGGHGVISVTAN 208 (292)
T ss_dssp GGHHHHHHTTCCEEEESGGG
T ss_pred hhhhhHhhCCceEEEeecch
Confidence 56677888999999988744
|
| >d1eixa_ c.1.2.3 (A:) Orotidine 5'-monophosphate decarboxylase (OMP decarboxylase) {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Ribulose-phoshate binding barrel family: Decarboxylase domain: Orotidine 5'-monophosphate decarboxylase (OMP decarboxylase) species: Escherichia coli [TaxId: 562]
Probab=88.18 E-value=0.43 Score=40.64 Aligned_cols=64 Identities=22% Similarity=0.291 Sum_probs=42.4
Q ss_pred HHHHHHHHcCCcEEEEcCCCCCCCCCccchHHHHHHHHHHhcCCCcEEEecCCCCHHH----------HHHHHHcCCCEE
Q 017718 234 EDARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTD----------VFKALALGASGI 303 (367)
Q Consensus 234 ~~a~~~~~~G~d~i~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~~~via~GGI~~~~d----------v~kal~lGAd~V 303 (367)
+.+..+.+.|+++++.+. .. +..+++..+ .-.++.+.||+-..+ .-+|+..|||.+
T Consensus 142 ~~a~~~~~~~~~~~~~~~----------~~---~~~~~~~~~-~~~~~~tPGI~~~~~~~~dq~r~~tp~~Ai~~GaD~i 207 (231)
T d1eixa_ 142 RLAALTQKCGLDGVVCSA----------QE---AVRFKQVFG-QEFKLVTPGIRPQGSEAGDQRRIMTPEQALSAGVDYM 207 (231)
T ss_dssp HHHHHHHHTTCSEEECCG----------GG---HHHHHHHHC-SSSEEEECCBCCTTCCCTTCCSCBCHHHHHHTTCSEE
T ss_pred HHHHHHHHhccccccccc----------hh---hhhhhhhcC-CccceecCCcccCCCCccCccccCCHHHHHHcCCCEE
Confidence 346778889999887643 11 223333332 455788888864221 456778999999
Q ss_pred EechHHHH
Q 017718 304 FIGRPVVY 311 (367)
Q Consensus 304 ~ig~~~l~ 311 (367)
.|||++.-
T Consensus 208 IVGR~It~ 215 (231)
T d1eixa_ 208 VIGRPVTQ 215 (231)
T ss_dssp EECHHHHT
T ss_pred EECCcccC
Confidence 99999974
|
| >d2cu0a1 c.1.5.1 (A:3-96,A:207-480) Inosine monophosphate dehydrogenase (IMPDH) {Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Inosine monophosphate dehydrogenase (IMPDH) family: Inosine monophosphate dehydrogenase (IMPDH) domain: Inosine monophosphate dehydrogenase (IMPDH) species: Pyrococcus horikoshii [TaxId: 53953]
Probab=87.36 E-value=0.39 Score=44.13 Aligned_cols=66 Identities=20% Similarity=0.214 Sum_probs=48.2
Q ss_pred CHHHHHHHHHcCCcEEEEcCCCCCCCCCccchHHHHHHHHHHhcCCCcEEEecCCCCHHHHHHHHHcCCCEEEec
Q 017718 232 TAEDARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFIG 306 (367)
Q Consensus 232 ~~~~a~~~~~~G~d~i~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~~~via~GGI~~~~dv~kal~lGAd~V~ig 306 (367)
..+.+..+.++|+|.|+++..-|+. ....+.++++++.. ++|||+ |+|.|++-+.. + .|||+|-+|
T Consensus 117 ~~~r~~~l~~aGvd~ivID~A~Gh~----~~~i~~lK~ir~~~--~~~vIa-GNVaT~e~~~~-l-~gaD~VkVG 182 (368)
T d2cu0a1 117 DIKRAIELDKAGVDVIVVDTAHAHN----LKAIKSMKEMRQKV--DADFIV-GNIANPKAVDD-L-TFADAVKVG 182 (368)
T ss_dssp CHHHHHHHHHTTCSEEEEECSCCCC----HHHHHHHHHHHHTC--CSEEEE-EEECCHHHHTT-C-TTSSEEEEC
T ss_pred HHHHHHHHHHcCCCEEEecCcccch----hhhhhhhhhhhhhc--ccceee-ccccCHHHHHh-h-hcCcceeec
Confidence 4466777889999999997643432 22456677777655 688887 99999987643 3 599999887
|
| >d1ojxa_ c.1.10.1 (A:) Archaeal fructose 1,6-bisphosphate aldolase {Archaeon Thermoproteus tenax [TaxId: 2271]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Aldolase family: Class I aldolase domain: Archaeal fructose 1,6-bisphosphate aldolase species: Archaeon Thermoproteus tenax [TaxId: 2271]
Probab=86.65 E-value=1.5 Score=37.61 Aligned_cols=81 Identities=32% Similarity=0.503 Sum_probs=53.7
Q ss_pred hcCCCEEEEec---------CCH----HHHHHHHHcCCcEEEEcCCCCCCCCCccchHHHHHHHHHHhcCCCcEEEecCC
Q 017718 220 ITKLPILVKGV---------LTA----EDARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGV 286 (367)
Q Consensus 220 ~~~~Pv~vK~v---------~~~----~~a~~~~~~G~d~i~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~~~via~GGI 286 (367)
.+++|+++=.. .++ ..++.+.+.|+|.+.+-- +...+...++.+.. ..+||+..||-
T Consensus 134 ~~glP~v~e~~p~g~~~~~~~~~~~v~~aaria~ElGaDivK~~~---------p~~~~~~~~~v~~a-~~~pv~~~gG~ 203 (251)
T d1ojxa_ 134 KFDLPLVVWSYPRGGKVVNETAPEIVAYAARIALELGADAMKIKY---------TGDPKTFSWAVKVA-GKVPVLMSGGP 203 (251)
T ss_dssp HHTCCEEEEECCCSTTCCCTTCHHHHHHHHHHHHHHTCSEEEECC---------CSSHHHHHHHHHHT-TTSCEEEECCS
T ss_pred HcCCeEEEEEeecCCccccCCCHHHHHHHHHHHHHhCCCEEEecC---------CCcHHHHHHHHHhc-CCCceEEeCCC
Confidence 46888876433 123 237788999999999832 22334444444332 36898888886
Q ss_pred C--CHHHHHH----HHHcCCCEEEechHHH
Q 017718 287 R--RGTDVFK----ALALGASGIFIGRPVV 310 (367)
Q Consensus 287 ~--~~~dv~k----al~lGAd~V~ig~~~l 310 (367)
. +.+++++ ++..||.++.+||.+.
T Consensus 204 ~~~~~~~~l~~~~~a~~~Ga~G~~~GRni~ 233 (251)
T d1ojxa_ 204 KTKTEEDFLKQVEGVLEAGALGIAVGRNVW 233 (251)
T ss_dssp CCSSHHHHHHHHHHHHHTTCCEEEESHHHH
T ss_pred CCCCHHHHHHHHHHHHHCCCcEEeechhhh
Confidence 5 5666664 4567999999999775
|
| >d1z41a1 c.1.4.1 (A:2-338) NADPH dehydrogenase NamA {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: FMN-linked oxidoreductases family: FMN-linked oxidoreductases domain: NADPH dehydrogenase NamA species: Bacillus subtilis [TaxId: 1423]
Probab=86.19 E-value=3.8 Score=36.45 Aligned_cols=93 Identities=14% Similarity=0.122 Sum_probs=60.7
Q ss_pred HhhCCCceEEEEee------cCCHHHHHHHHHHHHHcCCcEEEEecCCCCCCchhHHhhhhcCCCCccccccccccccCc
Q 017718 118 ASTGPGIRFFQLYV------YKDRNVVAQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLTLKNFQGLDLGK 191 (367)
Q Consensus 118 ~~~~~~~~~~QLy~------~~d~~~~~~~l~ra~~~G~~ai~itvd~p~~g~r~~~~~~~~~~p~~~~~~~~~~~~~~~ 191 (367)
.+..+.+.++.+-. ..+.+...++++..+++|.+.+.++........ ...++
T Consensus 204 r~~~~~~~~vr~~~~~~~~~g~~~~~~~~~~~~l~~~g~d~~~~s~g~~~~~~--------~~~~~-------------- 261 (337)
T d1z41a1 204 KQVWDGPLFVRVSASDYTDKGLDIADHIGFAKWMKEQGVDLIDCSSGALVHAD--------INVFP-------------- 261 (337)
T ss_dssp HHHCCSCEEEEEECCCCSTTSCCHHHHHHHHHHHHHTTCCEEEEECCCSSCCC--------CCCCT--------------
T ss_pred hhhhcccceEEecccccccCccchhhhHHHHHHHHHcCCcccccccccccccc--------cccCC--------------
Confidence 34444566665532 345667778888899999999888766432100 00000
Q ss_pred cccccchhhHHHhhhccCccccH-HHHHhhcCCCEEEEec-CCHHHHHHHHHcC-CcEEEE
Q 017718 192 MDEANDSGLAAYVAGQIDRSLSW-KWLQTITKLPILVKGV-LTAEDARIAVQAG-AAGIIV 249 (367)
Q Consensus 192 ~~~~~~~~~~~~~~~~~d~~~~~-~~l~~~~~~Pv~vK~v-~~~~~a~~~~~~G-~d~i~v 249 (367)
.....+ +.+|+.+++||++-+. .+++.|+.+++.| +|.|.+
T Consensus 262 -----------------~~~~~~~~~ik~~~~~pvi~~G~i~~~~~ae~~l~~g~~D~V~~ 305 (337)
T d1z41a1 262 -----------------GYQVSFAEKIREQADMATGAVGMITDGSMAEEILQNGRADLIFI 305 (337)
T ss_dssp -----------------TTTHHHHHHHHHHHCCEEEECSSCCSHHHHHHHHHTTSCSEEEE
T ss_pred -----------------cccHHHHHHHHHhcCceEEEeCCcCCHHHHHHHHHCCCcceehh
Confidence 001123 3888999999997665 5799999999998 998877
|
| >d1dbta_ c.1.2.3 (A:) Orotidine 5'-monophosphate decarboxylase (OMP decarboxylase) {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Ribulose-phoshate binding barrel family: Decarboxylase domain: Orotidine 5'-monophosphate decarboxylase (OMP decarboxylase) species: Bacillus subtilis [TaxId: 1423]
Probab=86.02 E-value=0.59 Score=39.90 Aligned_cols=80 Identities=24% Similarity=0.361 Sum_probs=50.1
Q ss_pred HHHHHHHHcCCcEEEEcCCCCCCCCCccchHHHHHHHHHHhcCCCcEEEecCCCCHHH----------HHHHHHcCCCEE
Q 017718 234 EDARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTD----------VFKALALGASGI 303 (367)
Q Consensus 234 ~~a~~~~~~G~d~i~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~~~via~GGI~~~~d----------v~kal~lGAd~V 303 (367)
..+..+.+.|+++++.+.+ . +..+++.. +.-.++...||+-..+ ..+++..|||.+
T Consensus 146 ~~~~~~~~~g~~g~v~s~~----------~---~~~~r~~~-~~~~~ivtPGI~~~~~~~~dq~r~~tp~~a~~~GaD~i 211 (237)
T d1dbta_ 146 HYSKQAEESGLDGVVCSVH----------E---AKAIYQAV-SPSFLTVTPGIRMSEDAANDQVRVATPAIAREKGSSAI 211 (237)
T ss_dssp HHHHHHHHTTCSEEECCGG----------G---HHHHTTTS-CTTCEEEECCBCCTTSCCTTCSSCBCHHHHHHTTCSEE
T ss_pred HHHHhhhhcCcceeecchh----------h---hhhhcccc-ccceeEeccccccCCCCCCCceeeCCHHHHHHcCCCEE
Confidence 3456778889999887421 1 22333322 2445677888865322 467888999999
Q ss_pred EechHHHHHhhccChHHHHHHHHHHHHHHH
Q 017718 304 FIGRPVVYSLAAEGEKGVRRVLEMLREEFE 333 (367)
Q Consensus 304 ~ig~~~l~~l~~~G~~~v~~~i~~l~~el~ 333 (367)
.|||++..+ .-+ .+..+.+++|++
T Consensus 212 IVGR~I~~s---~dP---~~aa~~i~~~ie 235 (237)
T d1dbta_ 212 VVGRSITKA---EDP---VKAYKAVRLEWE 235 (237)
T ss_dssp EECHHHHTS---SCH---HHHHHHHHHHHH
T ss_pred EECCcccCC---CCH---HHHHHHHHHHHc
Confidence 999999753 222 245566666654
|
| >d1gvfa_ c.1.10.2 (A:) Tagatose-1,6-bisphosphate aldolase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Aldolase family: Class II FBP aldolase domain: Tagatose-1,6-bisphosphate aldolase species: Escherichia coli [TaxId: 562]
Probab=85.64 E-value=10 Score=32.80 Aligned_cols=107 Identities=18% Similarity=0.279 Sum_probs=73.6
Q ss_pred CCHHHHHH-HHHcCCcEEEEcC---CCCCCCCCccc--hHHHHHHHHHHhcCCCcEEEecCCCCH-HHHHHHHHcCCCEE
Q 017718 231 LTAEDARI-AVQAGAAGIIVSN---HGARQLDYVPA--TIMALEEVVKATQGRIPVFLDGGVRRG-TDVFKALALGASGI 303 (367)
Q Consensus 231 ~~~~~a~~-~~~~G~d~i~vs~---~gg~~~~~~~~--~~~~l~~i~~~~~~~~~via~GGI~~~-~dv~kal~lGAd~V 303 (367)
.++++|+. ..+.|+|.+-++. ||-+ .+.+ .++.|.+|.+.+ ++|+..=||=..+ +++.+++..|..-|
T Consensus 154 T~peea~~Fv~~TgvD~LAvaiGt~HG~y---~~~p~l~~~~L~~i~~~~--~vPLVlHGgSG~~~e~i~~ai~~Gi~Ki 228 (284)
T d1gvfa_ 154 TDPQEAKRFVELTGVDSLAVAIGTAHGLY---SKTPKIDFQRLAEIREVV--DVPLVLHGASDVPDEFVRRTIELGVTKV 228 (284)
T ss_dssp CCHHHHHHHHHHHCCSEEEECSSCCSSCC---SSCCCCCHHHHHHHHHHC--CSCEEECCCTTCCHHHHHHHHHTTEEEE
T ss_pred CCHHHHHHHHHHhCCCEEeeecCceeecc---CCCCccccchhhhhhccc--cCCeEeeCCCCCCHHHHHHHHHcCeEEE
Confidence 56787765 4589999999974 5543 2323 568899998888 7999987755444 56678888999999
Q ss_pred EechHHHHHhh-------ccCh------HHHHHHHHHHHHHHHHHHHHhCCC
Q 017718 304 FIGRPVVYSLA-------AEGE------KGVRRVLEMLREEFELAMALSGCR 342 (367)
Q Consensus 304 ~ig~~~l~~l~-------~~G~------~~v~~~i~~l~~el~~~m~~~G~~ 342 (367)
-++|-+-.+.. .+.+ .-.....+.+++.++..|+.+|..
T Consensus 229 Ni~T~l~~a~~~~~~~~l~~n~~~~d~~~~~~~~~~a~~~~v~~~i~~fGs~ 280 (284)
T d1gvfa_ 229 NVATELKIAFAGAVKAWFAENPQGNDPRYYMRVGMDAMKEVVRNKINVCGSA 280 (284)
T ss_dssp EECHHHHHHHHHHHHHHHHHCTTCCCHHHHHHHHHHHHHHHHHHHHHHHTCT
T ss_pred EechHHHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHHHHHHHHHHhCCC
Confidence 99997754321 1111 113344566777777888888864
|
| >d1vr6a1 c.1.10.4 (A:1-338) 3-deoxy-D-arabino-heptulosonate-7-phosphate synthase (DAHP synthase, AroG) {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Aldolase family: Class I DAHP synthetase domain: 3-deoxy-D-arabino-heptulosonate-7-phosphate synthase (DAHP synthase, AroG) species: Thermotoga maritima [TaxId: 2336]
Probab=85.61 E-value=1.3 Score=39.99 Aligned_cols=267 Identities=19% Similarity=0.202 Sum_probs=136.8
Q ss_pred cccCCCCchhhH-HHhHhccccceeeccccCC-------CCCCccceeEcCeee---ccceEeCcccchhccCChhhHHH
Q 017718 25 YYASGAEDQWTL-QENRNAFSRILFRPRILID-------VSKIDMNTTVLGFKI---SMPIMIAPTAMQKMAHPEGEYAT 93 (367)
Q Consensus 25 y~~~ga~~~~t~-~~n~~~~~~i~l~pr~l~~-------~~~vd~st~i~g~~l---~~Pi~iAPm~~~~l~~~~~e~~~ 93 (367)
.+-|-.||+..+ .+..++|..+.=+-|+..+ ...=|+.+++.|.++ +..+|-.|...-+ .+--..+
T Consensus 37 tiig~iGd~~~~~~~~~~~l~~Ve~v~~i~~pykl~SR~~~~~~t~I~v~gv~iG~~~l~lIAGPC~vES---~e~~~~~ 113 (338)
T d1vr6a1 37 TVIGIIGDDRYVVADKFESLDCVESVVRVLKPYKLVSREFHPEDTVIDLGDVKIGNGYFTIIAGPCSVEG---REMLMET 113 (338)
T ss_dssp EEEEEEEEESSCCHHHHHTSTTEEEEEECSCSCCTTBTTTCCSCCCEECSSCEESTTEEEEEEECSBCCC---HHHHHHH
T ss_pred EEEEEECCccccCHHHHhcCCcceEEEecCCchhhhhCccCCCCceEEeCCEEECCCceEEEecCCCCCC---HHHHHHH
Confidence 345566666554 3344566665554454432 333466666666555 2345555544321 2223478
Q ss_pred HHHHHHcCCceeec-CCCCCCHHHHHhhCCCceEEEEeecCCHHHHHHHHHHHHH-cCCcEEEEecCCCCCCchhHHhhh
Q 017718 94 ARAASAAGTIMTLS-SWSTSSVEEVASTGPGIRFFQLYVYKDRNVVAQLVRRAER-AGFKAIALTVDTPRLGRREADIKN 171 (367)
Q Consensus 94 a~aa~~~G~~~~vs-~~~~~~~e~i~~~~~~~~~~QLy~~~d~~~~~~~l~ra~~-~G~~ai~itvd~p~~g~r~~~~~~ 171 (367)
|+.+++.|..+..+ .+.. .. .+..||- .. +.-.++++++++ .|...+ ..|-.+ +.-+...
T Consensus 114 A~~lke~g~~~~r~g~fKp-------Rt--sp~sf~g---~g-~~gL~~l~~~k~~~glpvv-TdV~~~----~~~~~~~ 175 (338)
T d1vr6a1 114 AHFLSELGVKVLRGGAYKP-------RT--SPYSFQG---LG-EKGLEYLREAADKYGMYVV-TEALGE----DDLPKVA 175 (338)
T ss_dssp HHHHHHTTCCEEECBSCCC-------CC--STTSCCC---CT-HHHHHHHHHHHHHHTCEEE-EECSSG----GGHHHHH
T ss_pred HHHHHHhCccccccceecc-------cc--ccccccc---ch-HHHHHHHHHHHhhcCceeE-Eeccch----hhhhhhh
Confidence 99999999887764 2221 11 2344552 12 334466666654 576433 222221 1111110
Q ss_pred hcCCCCccccccccccccCccccccchhhHHHhhhccCccccH-HHHHhhcCCCEEEEec--CCHHH----HHHHHHcCC
Q 017718 172 RFTLPPFLTLKNFQGLDLGKMDEANDSGLAAYVAGQIDRSLSW-KWLQTITKLPILVKGV--LTAED----ARIAVQAGA 244 (367)
Q Consensus 172 ~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~-~~l~~~~~~Pv~vK~v--~~~~~----a~~~~~~G~ 244 (367)
.+. .+-.+ ....++ .+++ ..+ ..++.||.+|-- .++++ ++.+...|-
T Consensus 176 e~~--------DilQI-------------~A~~~~----n~~LL~~~-g~t~kpV~lKkG~~~s~~e~l~aae~i~~~Gn 229 (338)
T d1vr6a1 176 EYA--------DIIQI-------------GARNAQ----NFRLLSKA-GSYNKPVLLKRGFMNTIEEFLLSAEYIANSGN 229 (338)
T ss_dssp HHC--------SEEEE-------------CGGGTT----CHHHHHHH-HTTCSCEEEECCTTCCHHHHHHHHHHHHHTTC
T ss_pred cee--------eeEEe-------------chhhcc----CHHHHHHh-hccCCcEEecCccccchhhhhhhHHHHHhcCC
Confidence 000 00000 001111 1121 122 236899999976 56665 667788999
Q ss_pred cEEEEcCCCCCCCCC-c--cchHHHHHHHHHHhcCCCcEEEe----cCCCCHHH--HHHHHHcCCCEEEechHHHHH-hh
Q 017718 245 AGIIVSNHGARQLDY-V--PATIMALEEVVKATQGRIPVFLD----GGVRRGTD--VFKALALGASGIFIGRPVVYS-LA 314 (367)
Q Consensus 245 d~i~vs~~gg~~~~~-~--~~~~~~l~~i~~~~~~~~~via~----GGI~~~~d--v~kal~lGAd~V~ig~~~l~~-l~ 314 (367)
+-|++.-.|-+...+ . ...+..++.+++.. ..|||+| ||-+...- +..++++|||++++=...==. .-
T Consensus 230 ~~vilcERG~~t~~~~~~~~lD~~~i~~~k~~~--~lPVi~DpsHs~G~r~~v~~larAAvA~GadGl~iE~Hp~P~~Al 307 (338)
T d1vr6a1 230 TKIILCERGIRTFEKATRNTLDISAVPIIRKES--HLPILVDPSHSGGRRDLVIPLSRAAIAVGAHGIIVEVHPEPEKAL 307 (338)
T ss_dssp CCEEEEECCBCCSCCSSSSBCCTTHHHHHHHHB--SSCEEECHHHHHCSGGGHHHHHHHHHHHTCSEEEEEBCSCGGGCS
T ss_pred ccceeeeccccccccccccchhhcccceeeccc--cCceeeCCCCCCCchhHHHHHHHHHHHhCCCEEEEEeCCCcccCC
Confidence 999887555333222 1 22445566665543 6899984 66655533 336778999999998621000 01
Q ss_pred ccChHHH-HHHHHHHHHHHHHHHHHhC
Q 017718 315 AEGEKGV-RRVLEMLREEFELAMALSG 340 (367)
Q Consensus 315 ~~G~~~v-~~~i~~l~~el~~~m~~~G 340 (367)
+.|+..+ -+-++.|.++++.+-...|
T Consensus 308 sDg~q~l~~~~~~~ll~~l~~i~~~vg 334 (338)
T d1vr6a1 308 SDGKQSLDFELFKELVQEMKKLADALG 334 (338)
T ss_dssp SCGGGCBCHHHHHHHHHHHHHHHHHHT
T ss_pred CCccccCCHHHHHHHHHHHHHHHHHhc
Confidence 2343211 1245666677776666665
|
| >d1dxea_ c.1.12.5 (A:) 2-dehydro-3-deoxy-galactarate aldolase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Phosphoenolpyruvate/pyruvate domain family: HpcH/HpaI aldolase domain: 2-dehydro-3-deoxy-galactarate aldolase species: Escherichia coli [TaxId: 562]
Probab=84.93 E-value=2.9 Score=35.83 Aligned_cols=70 Identities=11% Similarity=0.082 Sum_probs=49.2
Q ss_pred CCHHHHHHHHHcCCcEEEEcC-CCCCCCCCccchHHHHHHHHHHhc-CCCcEEEecCCCCHHHHHHHHHcCCCEEEech
Q 017718 231 LTAEDARIAVQAGAAGIIVSN-HGARQLDYVPATIMALEEVVKATQ-GRIPVFLDGGVRRGTDVFKALALGASGIFIGR 307 (367)
Q Consensus 231 ~~~~~a~~~~~~G~d~i~vs~-~gg~~~~~~~~~~~~l~~i~~~~~-~~~~via~GGI~~~~dv~kal~lGAd~V~ig~ 307 (367)
.++..++.+..+|.|++++.. ||. -..+.+..+..+.. ..++.++==--.++..+.++|.+||++|++-.
T Consensus 25 ~~p~~~ei~a~~G~Dfv~iD~EHg~-------~~~~~~~~~i~a~~~~g~~~~VRvp~~~~~~i~~~LD~Ga~GIivP~ 96 (253)
T d1dxea_ 25 SNPISTEVLGLAGFDWLVLDGEHAP-------NDISTFIPQLMALKGSASAPVVRVPTNEPVIIKRLLDIGFYNFLIPF 96 (253)
T ss_dssp CSHHHHHHHTTSCCSEEEEESSSSS-------CCHHHHHHHHHHTTTCSSEEEEECSSSCHHHHHHHHHTTCCEEEESC
T ss_pred CCHHHHHHHHcCCCCEEEEecccCC-------CChhHHHHHHHHHhccCCCceecCCCCCHHHHHHHHhcCccEEEecc
Confidence 678899999999999999976 443 33444444444443 24554542223689999999999999998864
|
| >d1a53a_ c.1.2.4 (A:) Indole-3-glycerophosphate synthase, IPGS {Archaeon Sulfolobus solfataricus [TaxId: 2287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Ribulose-phoshate binding barrel family: Tryptophan biosynthesis enzymes domain: Indole-3-glycerophosphate synthase, IPGS species: Archaeon Sulfolobus solfataricus [TaxId: 2287]
Probab=84.67 E-value=2 Score=36.89 Aligned_cols=72 Identities=13% Similarity=0.217 Sum_probs=53.4
Q ss_pred CHHHHHHHHHcCCcEEEEcCCCCCCCCCccchHHHHHHHHHHhcCCCcEEEecCCCCHHHHHHHHHcCCCEEEechHH
Q 017718 232 TAEDARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFIGRPV 309 (367)
Q Consensus 232 ~~~~a~~~~~~G~d~i~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~~~via~GGI~~~~dv~kal~lGAd~V~ig~~~ 309 (367)
++.+.....+.||++|.|-.-. ...+ ..++-|..+++.+ ++||+--==|-++.++.++..+|||+|.+=-.+
T Consensus 64 d~~~~a~~~~~gA~aiSVLTd~--~~F~--Gs~~dl~~v~~~~--~~PiLrKDFIid~~QI~ea~~~GADaiLLI~~~ 135 (247)
T d1a53a_ 64 DPIEYSKFMERYAVGLSILTEE--KYFN--GSYETLRKIASSV--SIPILMKDFIVKESQIDDAYNLGADTVLLIVKI 135 (247)
T ss_dssp CHHHHHHHHTTTCSEEEEECCC--TTTC--CCHHHHHHHHHHC--CSCEEEESCCCSHHHHHHHHHHTCSEEEEEGGG
T ss_pred CHHHHHHHHHhCCCeEEEecCc--cccc--cchHHHHHHHhcc--ccceeecccccChHHHHHHHHhhcchhhhhhhh
Confidence 4444445778999999884210 1112 2567777888877 899999888999999999999999999876544
|
| >d1ccwa_ c.23.6.1 (A:) Glutamate mutase, small subunit {Clostridium cochlearium [TaxId: 1494]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Flavodoxin-like superfamily: Cobalamin (vitamin B12)-binding domain family: Cobalamin (vitamin B12)-binding domain domain: Glutamate mutase, small subunit species: Clostridium cochlearium [TaxId: 1494]
Probab=84.12 E-value=1.4 Score=34.28 Aligned_cols=99 Identities=14% Similarity=0.123 Sum_probs=56.7
Q ss_pred cCCCEEEEec-CCH-HHHHHHHHcCCcEEEEcCCCCCCCCCccchHHHHHHHHHHhcCCCcEEEecCCCC----HHHHH-
Q 017718 221 TKLPILVKGV-LTA-EDARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRR----GTDVF- 293 (367)
Q Consensus 221 ~~~Pv~vK~v-~~~-~~a~~~~~~G~d~i~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~~~via~GGI~~----~~dv~- 293 (367)
.+.-|+.=+. .+. +.+..+.+.++|.|.+|..-++.. +...+.+.++++....++||++-|++.+ ..++.
T Consensus 30 ~G~~V~~LG~~~p~e~iv~a~~~~~~d~v~lS~~~~~~~---~~~~~~~~~l~~~~~~~i~iivGG~~~~~~~~~~~~~~ 106 (137)
T d1ccwa_ 30 AGFNVVNIGVLSPQELFIKAAIETKADAILVSSLYGQGE---IDCKGLRQKCDEAGLEGILLYVGGNIVVGKQHWPDVEK 106 (137)
T ss_dssp TTCEEEEEEEEECHHHHHHHHHHHTCSEEEEEECSSTHH---HHHTTHHHHHHHTTCTTCEEEEEESCSSSSCCHHHHHH
T ss_pred CCCeEEecccccCHHHHHHHHHhcCCCEEEEeeccccch---HHHHHHHHHHHHhccCCCEEEEeCCcCCCccccHHHHH
Confidence 3555554443 344 457888999999999987443211 1111233333332223699998887754 44444
Q ss_pred HHHHcCCCEEEechHHHHHhhccChHHHHHHHHHHHHHHH
Q 017718 294 KALALGASGIFIGRPVVYSLAAEGEKGVRRVLEMLREEFE 333 (367)
Q Consensus 294 kal~lGAd~V~ig~~~l~~l~~~G~~~v~~~i~~l~~el~ 333 (367)
+.-.+|.|+|.=.. .....+++.++++|+
T Consensus 107 ~l~~~Gv~~if~~~-----------t~~~~~~~~l~~~l~ 135 (137)
T d1ccwa_ 107 RFKDMGYDRVYAPG-----------TPPEVGIADLKKDLN 135 (137)
T ss_dssp HHHHTTCSEECCTT-----------CCHHHHHHHHHHHHT
T ss_pred HHHHcCCCEEECCC-----------CCHHHHHHHHHHHhC
Confidence 44568999985221 122346667777654
|
| >d2r25b1 c.23.1.1 (B:1087-1214) Response regulator Sin1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Flavodoxin-like superfamily: CheY-like family: CheY-related domain: Response regulator Sin1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=84.02 E-value=5.4 Score=29.97 Aligned_cols=83 Identities=10% Similarity=0.155 Sum_probs=56.1
Q ss_pred hcCCCEEEEecCCHHHHHHHHH------cCCcEEEEcCCCCCCCCCccchHHHHHHHHHHhcCCCcEEEecCCCCHHHHH
Q 017718 220 ITKLPILVKGVLTAEDARIAVQ------AGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVF 293 (367)
Q Consensus 220 ~~~~Pv~vK~v~~~~~a~~~~~------~G~d~i~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~~~via~GGI~~~~dv~ 293 (367)
.++... +....+.++|..+.+ ...|.|.+.-+- . +..-++++.++++....++|||+-.+-.+..+..
T Consensus 23 ~~g~~~-v~~a~~g~eAl~~l~~~~~~~~~~dlillD~~m----P-~~dG~el~~~ir~~~~~~~piI~lT~~~~~~~~~ 96 (128)
T d2r25b1 23 LEGIEN-IELACDGQEAFDKVKELTSKGENYNMIFMDVQM----P-KVDGLLSTKMIRRDLGYTSPIVALTAFADDSNIK 96 (128)
T ss_dssp HTTCCC-EEEESSHHHHHHHHHHHHHHTCCCSEEEECSCC----S-SSCHHHHHHHHHHHSCCCSCEEEEESCCSHHHHH
T ss_pred HcCCeE-EEEEcChHHHHHHHHhhhhccCCCCEEEEEeCC----C-CCCHHHHHHHHHHccCCCCeEEEEECCCCHHHHH
Confidence 345432 344567777654432 357778775321 1 1235677777776554578999988899999999
Q ss_pred HHHHcCCCEEEechHH
Q 017718 294 KALALGASGIFIGRPV 309 (367)
Q Consensus 294 kal~lGAd~V~ig~~~ 309 (367)
+++.+||+.. +-.|+
T Consensus 97 ~~~~~G~~~~-l~KP~ 111 (128)
T d2r25b1 97 ECLESGMNGF-LSKPI 111 (128)
T ss_dssp HHHHTTCSEE-EESSC
T ss_pred HHHHcCCCEE-EECCC
Confidence 9999999987 55565
|
| >d1f61a_ c.1.12.7 (A:) Isocitrate lyase {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Phosphoenolpyruvate/pyruvate domain family: Phosphoenolpyruvate mutase/Isocitrate lyase-like domain: Isocitrate lyase species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=83.97 E-value=3.4 Score=38.11 Aligned_cols=86 Identities=23% Similarity=0.227 Sum_probs=56.2
Q ss_pred CCCEEEEecCCHHHHHHHHHcCCcEEEEcCCC--------CC-CCCCccc----hHHHHHHHHHHhc-------------
Q 017718 222 KLPILVKGVLTAEDARIAVQAGAAGIIVSNHG--------AR-QLDYVPA----TIMALEEVVKATQ------------- 275 (367)
Q Consensus 222 ~~Pv~vK~v~~~~~a~~~~~~G~d~i~vs~~g--------g~-~~~~~~~----~~~~l~~i~~~~~------------- 275 (367)
+-+|..=++.+.-.|..+.++|.++|.+||-+ +. ..|.+.- ..+.+..|...+.
T Consensus 63 ~~~v~~~Ga~d~~~A~~~~kaGf~aiY~SG~~vaa~~s~s~~g~PD~gl~~~~ev~~~v~~I~~~~~~~d~~~~~~~~~~ 142 (418)
T d1f61a_ 63 LEWVNALGALTGNMAVQQVRAGLKAIYLSGWQVAGDANLSGHTYPDQSLYPANSVPQVVRRINNALQRADQIAKIEGDTS 142 (418)
T ss_dssp SSCEEEEBCCSHHHHHHHHHTTCSCEEECHHHHHHHCCTTCCCCCSSSCSCTTHHHHHHHHHHHHHHHHHHHHHHHTCCS
T ss_pred CCCEEecccCCHHHHHHHHHhCCCEEEechHhhhcccccccCCccchhhhhhHHHHHHHHHHHHHHHHHHHHHHHhcccc
Confidence 45777778899999999999999999998721 00 1233322 2233444432220
Q ss_pred ---CCCcEEEec--CCCCHHHHHH----HHHcCCCEEEech
Q 017718 276 ---GRIPVFLDG--GVRRGTDVFK----ALALGASGIFIGR 307 (367)
Q Consensus 276 ---~~~~via~G--GI~~~~dv~k----al~lGAd~V~ig~ 307 (367)
-.+|||+|+ |..+...+.+ +..+||.+|.|=-
T Consensus 143 ~~~~~~PIIaDaDtGfG~~~nv~rtvk~~i~AGaAgihiED 183 (418)
T d1f61a_ 143 VENWLAPIVADGEAGFGGALNVYELQKALIAAGVAGSHWED 183 (418)
T ss_dssp CSCSSCCEEEECTTCSSSHHHHHHHHHHHHHHTCSEEEEES
T ss_pred cccccCCeEEecccccccHHHHHHHHHHHHHhCCcEEEEec
Confidence 148999976 6667666663 3347999998865
|
| >d1igwa_ c.1.12.7 (A:) Isocitrate lyase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Phosphoenolpyruvate/pyruvate domain family: Phosphoenolpyruvate mutase/Isocitrate lyase-like domain: Isocitrate lyase species: Escherichia coli [TaxId: 562]
Probab=83.47 E-value=4 Score=37.53 Aligned_cols=84 Identities=19% Similarity=0.228 Sum_probs=55.7
Q ss_pred EEEEecCCHHHHHHHHHcCCcEEEEcCC-----CCC----CCCCccc----hHHHHHHHHHHhc----------------
Q 017718 225 ILVKGVLTAEDARIAVQAGAAGIIVSNH-----GAR----QLDYVPA----TIMALEEVVKATQ---------------- 275 (367)
Q Consensus 225 v~vK~v~~~~~a~~~~~~G~d~i~vs~~-----gg~----~~~~~~~----~~~~l~~i~~~~~---------------- 275 (367)
|..=++.++-.|..+.++|.++|.+||- .+. ..|-+.- ..+.+.+|...+.
T Consensus 65 v~~lGa~d~~~A~~~~kaGf~aiYvSG~~~sA~~~~~~~~~PD~gl~~~~~v~~~~~~I~~a~~~~d~~~~~~~~~~~~~ 144 (416)
T d1igwa_ 65 INSLGALTGGQALQQAKAGIEAVYLSGWQVAADANLAASMYPDQSLYPANSVPAVVERINNTFRRADQIQWSAGIEPGDP 144 (416)
T ss_dssp EEEEBCCSHHHHHHHHHHTCCCEEECHHHHHHHSCTTCCCCCSSSCSCTTHHHHHHHHHHHHHHHHHHHHHHTTCCTTCT
T ss_pred eeeCCcCCHHHHHHHHHcCCCEEEeccccccccccccCCCCCCcccccHHHHHHHHHHHHHHHHHHHHHHHhhhcccccc
Confidence 5555678999999999999999999872 111 1233322 2233444433331
Q ss_pred ----CCCcEEEec--CCCCHHHHHH----HHHcCCCEEEechH
Q 017718 276 ----GRIPVFLDG--GVRRGTDVFK----ALALGASGIFIGRP 308 (367)
Q Consensus 276 ----~~~~via~G--GI~~~~dv~k----al~lGAd~V~ig~~ 308 (367)
-.+|||+|+ |..+...+.+ +...||.+|.|=--
T Consensus 145 ~~~d~~lPIIADaDtGfG~~~nv~r~vk~~i~AGaagihiEDQ 187 (416)
T d1igwa_ 145 RYVDYFLPIVADAEAGFGGVLNAFELMKAMIEAGAAAVHFEDQ 187 (416)
T ss_dssp TCCCCCCCEEEECTTCSSSHHHHHHHHHHHHHTTCSEEEEESB
T ss_pred ccccccceeEEecccccCchHHHHHHHHHHHhCCCeEEEeccC
Confidence 028999966 7888888776 55689999988753
|
| >d1piia2 c.1.2.4 (A:1-254) Indole-3-glycerophosphate synthase, IPGS {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Ribulose-phoshate binding barrel family: Tryptophan biosynthesis enzymes domain: Indole-3-glycerophosphate synthase, IPGS species: Escherichia coli [TaxId: 562]
Probab=83.28 E-value=2 Score=37.08 Aligned_cols=73 Identities=12% Similarity=0.068 Sum_probs=53.2
Q ss_pred CCHHHHHHHHHcCCcEEEEcCCCCCCCCCccchHHHHHHHHHHhcCCCcEEEecCCCCHHHHHHHHHcCCCEEEechHH
Q 017718 231 LTAEDARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFIGRPV 309 (367)
Q Consensus 231 ~~~~~a~~~~~~G~d~i~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~~~via~GGI~~~~dv~kal~lGAd~V~ig~~~ 309 (367)
.++.++....+.||++|.|-... ..+.| .++.|..+++.+ ++||+--==|-++.++.++-.+|||+|.+=-.+
T Consensus 68 ~~p~~~a~~~~~gA~aiSVLTe~-~~F~G---s~~~l~~v~~~~--~~PiLrKDFIid~~QI~ear~~GADavLLI~~~ 140 (254)
T d1piia2 68 FDPARIAAIYKHYASAISVLTDE-KYFQG---SFNFLPIVSQIA--PQPILCKDFIIDPYQIYLARYYQADACLLMLSV 140 (254)
T ss_dssp CCHHHHHHHHTTTCSEEEEECCS-TTTCC---CTTHHHHHHHHC--CSCEEEESCCCSHHHHHHHHHTTCSEEEEETTT
T ss_pred chhHHHHHHHHhccCceEEeccc-ccCCC---CHHHHHHHHhcc--ccccchhcccCcHHHHHHHHhhccchhhhhHhh
Confidence 45666666788999999985311 11222 344566677776 799999888999999999999999999875433
|
| >d1xhfa1 c.23.1.1 (A:2-122) Aerobic respiration control protein ArcA, N-terminal domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Flavodoxin-like superfamily: CheY-like family: CheY-related domain: Aerobic respiration control protein ArcA, N-terminal domain species: Escherichia coli [TaxId: 562]
Probab=82.76 E-value=6.1 Score=29.24 Aligned_cols=75 Identities=15% Similarity=0.182 Sum_probs=53.7
Q ss_pred EEecCCHHHH-HHHHHcCCcEEEEcCCCCCCCCCccchHHHHHHHHHHhcCCCcEEEecCCCCHHHHHHHHHcCCCEEEe
Q 017718 227 VKGVLTAEDA-RIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFI 305 (367)
Q Consensus 227 vK~v~~~~~a-~~~~~~G~d~i~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~~~via~GGI~~~~dv~kal~lGAd~V~i 305 (367)
+....+.++| ..+.+.-.|.|+++-.- .+..-++.+.++++. ..+|||+-.|-.+..+..+++.+||+.. +
T Consensus 29 v~~a~~~~~al~~l~~~~~dlii~D~~m-----p~~~G~~~~~~~r~~--~~~pii~lt~~~~~~~~~~a~~~Ga~dy-l 100 (121)
T d1xhfa1 29 VFEATDGAEMHQILSEYDINLVIMDINL-----PGKNGLLLARELREQ--ANVALMFLTGRDNEVDKILGLEIGADDY-I 100 (121)
T ss_dssp EEEESSHHHHHHHHHHSCCSEEEECSSC-----SSSCHHHHHHHHHHH--CCCEEEEEESCCSHHHHHHHHHHTCSEE-E
T ss_pred EEEECChHHHHHHHHhcCCCEEEeeccc-----CCccCcHHHHHHHhc--CCCcEEEEECCCCHHHHHHHHHcCCCEE-E
Confidence 4455777776 45666778888875321 112335677776654 3799999999999999999999999986 4
Q ss_pred chHH
Q 017718 306 GRPV 309 (367)
Q Consensus 306 g~~~ 309 (367)
..||
T Consensus 101 ~KP~ 104 (121)
T d1xhfa1 101 TKPF 104 (121)
T ss_dssp ESSC
T ss_pred eCCC
Confidence 5576
|
| >d1onra_ c.1.10.1 (A:) Transaldolase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Aldolase family: Class I aldolase domain: Transaldolase species: Escherichia coli [TaxId: 562]
Probab=82.07 E-value=2.6 Score=37.49 Aligned_cols=90 Identities=17% Similarity=0.149 Sum_probs=62.2
Q ss_pred hcCCCEEEEecCCHHHHHHHHHcCCcEEEEcCCCCCCCC-------------CccchHHHHHHHHHH---hcCCCcEEEe
Q 017718 220 ITKLPILVKGVLTAEDARIAVQAGAAGIIVSNHGARQLD-------------YVPATIMALEEVVKA---TQGRIPVFLD 283 (367)
Q Consensus 220 ~~~~Pv~vK~v~~~~~a~~~~~~G~d~i~vs~~gg~~~~-------------~~~~~~~~l~~i~~~---~~~~~~via~ 283 (367)
.-++++-+-.+.+.+.|..+.++|+.+|... -||-.+ .+.+-...+.++.+. .+.+..|++
T Consensus 147 ~~GI~vN~TlvFS~~Qa~~aa~Aga~~iSpf--VgRi~d~~~~~~~~~~~~~~~~~Gv~~v~~i~~~~k~~g~~t~v~~- 223 (316)
T d1onra_ 147 KEGINCNLTLLFSFAQARACAEAGVFLISPF--VGRILDWYKANTDKKEYAPAEDPGVVSVSEIYQYYKEHGYETVVMG- 223 (316)
T ss_dssp HTTCCEEEEEECSHHHHHHHHHTTCSEEEEB--SHHHHHHHHHSSSCCCCCGGGCHHHHHHHHHHHHHHHTTCCCEEEE-
T ss_pred HcCCcccceeeecHHHHHHHHHcCCeEEeee--ecchhhhhhcccccccccccCCchHHHHHHHHHHHHHcCCCceeeh-
Confidence 3489999999999999999999999988763 222100 122234444444443 333555665
Q ss_pred cCCCCHHHHHHHHHcCCCEEEechHHHHHhh
Q 017718 284 GGVRRGTDVFKALALGASGIFIGRPVVYSLA 314 (367)
Q Consensus 284 GGI~~~~dv~kal~lGAd~V~ig~~~l~~l~ 314 (367)
..+|+..++... +|+|.+-+.-.++..+.
T Consensus 224 AS~r~~~~v~~l--aG~D~~Ti~p~~l~~l~ 252 (316)
T d1onra_ 224 ASFRNIGEILEL--AGCDRLTIAPALLKELA 252 (316)
T ss_dssp BCCSSHHHHHHT--TTSSEEEECHHHHHHHH
T ss_pred hhccchhhHHHH--hcCCceecCHHHHHHHh
Confidence 569999998764 69999999887776553
|
| >d1oy0a_ c.1.12.8 (A:) Ketopantoate hydroxymethyltransferase PanB {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Phosphoenolpyruvate/pyruvate domain family: Ketopantoate hydroxymethyltransferase PanB domain: Ketopantoate hydroxymethyltransferase PanB species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=80.84 E-value=12 Score=32.00 Aligned_cols=39 Identities=21% Similarity=0.241 Sum_probs=30.3
Q ss_pred HHHHHHHHcCCcEEEEcCCCCCCCCCccchHHHHHHHHHHhcCCCcEEEec
Q 017718 234 EDARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDG 284 (367)
Q Consensus 234 ~~a~~~~~~G~d~i~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~~~via~G 284 (367)
++|+.+.++||.+|++-. -+.++-.+|.+.+ ++|+|+-|
T Consensus 166 ~da~~le~AGa~~ivlE~----------Vp~~la~~It~~~--~IPtIGIG 204 (262)
T d1oy0a_ 166 ADAIAVAEAGAFAVVMEM----------VPAELATQITGKL--TIPTVGIG 204 (262)
T ss_dssp HHHHHHHHHTCSEEEEES----------CCHHHHHHHHHHC--SSCEEEES
T ss_pred HHHHHHHhCCcEEEeccc----------ccHhHHHHHHhhC--CceEEEec
Confidence 668899999999999843 2445556777777 89999866
|