Citrus Sinensis ID: 017729

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------
Protein Sequence
MCTLLFAKHICPCDLFCGDKIQVSVLLNTSQKPTKSTAPIAEYYPALEDARLLVVDWKLDVLCYATKRLPLIYALSKLVVPGLVDQLNTMKKAIMPYLLTQHPQLRPFHFSPPGVLQPITVIYELSYGETEMKQADLTTFSRCVSNLRSLRCQLIVEALSCIVHLALVKHKNLKIMSALSWMLKWSTFSLGWGCAYRSLQTIISWFRLQHYASVDVPSHREIQQALVDIGDKDPSFVGSREWIGAIELSFVLDKLLGVSCKVLNVRSGAELPEKCRELALHFESQGTPIMIGGGVLAYTLLGVDYNEASGDCAFLILDPHYTGNDEHKKIVNGGWCGWKKAVDSKGKNFFLHDKFYNLLLPQRPSMV
Secondary Structure (PSIPRED)
ccHHHHHHcccccccccccEEEEEEEHHcccccccccccEEEEcccccccEEEEEEEEEEEEEEEcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccEEEEEccccccccEEEEEccccccHHHHHcHHHHHHHcccccccccccccHHHHHHHHHHcccccccEEEEEcEEEEEEEccccccccccHHHHHHHHHHHHcccccccccccHHHHHHHHHHHcccccccccccccHHHHHHHHHHHHHHcccEEEEEEcccccHHHHHHHHHHHHHHccccEEEcccccccEEEEEEEEcccccEEEEEEccccccccccccHHcccEEEEEEccccccccccccccEEEEccccccccc
Secondary Structure Prediction (SSPRO)
ccHHHHHHHcccccHHHccEEEEHHHHHcccccccccccccccccccccccEEEEEEcEEEEEEcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccccccEEEEEEcccccccccccHHHHHHHHHHHHHHccccccccEEcccccccccccccccEEEcccEEEcccccccccccHHHHHHHHHHHHHHHccccccccccHHHHHHHHHHcccccccccccHHHHHHHHHHHHHHHHccccEEEEEEcccHHHHHHHHHHHHHHHHccccEEEcccccEEEEEEEEEccccccEEEEEEccccccccHHHHHHHcccEEEEEcHHcccccccccccEEEEccccccccc
Coil and Loop (DISEMBL)
mctllfakhicpcdlfcgdkiQVSVLLntsqkptkstapiaeyypaleDARLLVVDWKLDVLCYATKRLPLIYALSKLVVPGLVDQLNTMKKAIMPylltqhpqlrpfhfsppgvlqpITVIYELsygetemkqaDLTTFSRCVSNLRSLRCQLIVEALSCIVHLALVKHKNLKIMSALSWMLKWSTFSLGWGCAYRSLQTIISWFRLqhyasvdvpsHREIQQALVdigdkdpsfvgsrewiGAIELSFVLDKLLGVSCKVlnvrsgaelPEKCRELALHFesqgtpimigGGVLAYTLLgvdyneasgdcaflildphytgndehkkivnggwcgwkkavdskgknfflhdkfynlllpqrpsmv
Flexible Loop (DISEMBL)
MCTLLFAKHICPCDLFCGDKIQVSVLLNtsqkptkstapiaeyypALEDARLLVVDWKLDVLCYATKRLPLIYALSKLVVPGLVDQLNTMKKAIMPYLLTQHPQLRPFHFSPPGVLQPITVIYELSYGETEMKQADLTTFSRCVSNLRSLRCQLIVEALSCIVHLALVKHKNLKIMSALSWMLKWSTFSLGWGCAYRSLQTIISWFRLQHYASVDVPSHREIQQALVDIGDKDPSFVGSREWIGAIELSFVLDKLLGVSCKVLNVRSGAELPEKCRELALHFESQGTPIMIGGGVLAYTLLGVDYNEASGDCAFLILDPHYTGNDEHKKIVNGGWCGWKKAVDSKGKNFFLHDKFynlllpqrpsmv
Low Complexity Region (SEG)
MCTLLFAKHICPCDLFCGDKIQVSVLLNTSQKPTKSTAPIAEYYPALEDARLLVVDWKLDVLCYATKRLPLIYALSKLVVPGLVDQLNTMKKAIMPYLLTQHPQLRPFHFSPPGVLQPITVIYELSYGETEMKQADLTTFSRCVSNLRSLRCQLIVEALSCIVHLALVKHKNLKIMSALSWMLKWSTFSLGWGCAYRSLQTIISWFRLQHYASVDVPSHREIQQALVDIGDKDPSFVGSREWIGAIELSFVLDKLLGVSCKVLNVRSGAELPEKCRELALHFESQGTPIMIGGGVLAYTLLGVDYNEASGDCAFLILDPHYTGNDEHKKIVNGGWCGWKKAVDSKGKNFFLHDKFYNLLLPQRPSMV
Disordered region (IsUnstruct)
*CTLLFAKHICPCDLFCGDKIQVSVLLNTS******TAPIAEYYPALEDARLLVVDWKLDVLCYATKRLPLIYALSKLVVPGLVDQLNTMKKAIMPYLLTQHPQLRPFHFSPPGVLQPITVIYELSYGETEMKQADLTTFSRCVSNLRSLRCQLIVEALSCIVHLALVKHKNLKIMSALSWMLKWSTFSLGWGCAYRSLQTIISWFRLQHYASVDVPSHREIQQALVDIGDKDPSFVGSREWIGAIELSFVLDKLLGVSCKVLNVRSGAELPEKCRELALHFESQGTPIMIGGGVLAYTLLGVDYNEASGDCAFLILDPHYTGNDEHKKIVNGGWCGWKKAVDSKGKNFFLHDKFYNLLL*******
Disordered Region (DISOPRED)
*********IC*CDLFCGDKIQVSVLLN************AEYYPALEDARLLVVDWKLDVLCYATKRLPLIYALSKLVVPGLVDQLNTMKKAIMPYLLTQHPQLRPFHFSPPGVLQPITVIYELSYG**********TFSRCVSNLRSLRCQLIVEALSCIVHLALVKHKNLKIMSALSWMLKWSTFSLGWGCAYRSLQTIISWFRLQHYASVDVPSHREIQQALVDIGDKDPSFVGSREWIGAIELSFVLDKLLGVSCKVLNVRSGAELPEKCRELALHFESQGTPIMIGGGVLAYTLLGVDYNEASGDCAFLILDPHYTGNDEHKKIVNGGWCGWKKAVDSKGKNFFLHDKFYNLLLPQRPS**
Disordered Region (DISEMBL)
MCTLLFAKHICPCDLFCGDKIQVSVLLNTSQKPTKSTAPIAEYYPALEDARLLVVDWKLDVLCYATKRLPLIYALSKLVVPGLVDQLNTMKKAIMPYLLTQHPQLRPFHFSPPGVLQPITVIYELSYGETEMKQADLTTFSRCVSNLRSLRCQLIVEALSCIVHLALVKHKNLKIMSALSWMLKWSTFSLGWGCAYRSLQTIISWFRLQHYASVDVPSHREIQQALVDIGDKDPSFVGSREWIGAIELSFVLDKLLGVSCKVLNVRSGAELPEKCRELALHFESQGTPIMIGGGVLAYTLLGVDYNEASGDCAFLILDPHYTGNDEHKKIVNGGWCGWKKAVDSKGKNFFLHDKFYNLLLPQRPSMV
Disordered Region (DISPRO)
MCTLLFAKHICPCDLFCGDKIQVSVLLNTSQKPTKSTAPIAEYYPALEDARLLVVDWKLDVLCYATKRLPLIYALSKLVVPGLVDQLNTMKKAIMPYLLTQHPQLRPFHFSPPGVLQPITVIYELSYGETEMKQADLTTFSRCVSNLRSLRCQLIVEALSCIVHLALVKHKNLKIMSALSWMLKWSTFSLGWGCAYRSLQTIISWFRLQHYASVDVPSHREIQQALVDIGDKDPSFVGSREWIGAIELSFVLDKLLGVSCKVLNVRSGAELPEKCRELALHFESQGTPIMIGGGVLAYTLLGVDYNEASGDCAFLILDPHYTGNDEHKKIVNGGWCGWKKAVDSKGKNFFLHDKFYNLLLPQRPS**
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
SSSSSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MCTLLFAKHICPCDLFCGDKIQVSVLLNTSQKPTKSTAPIAEYYPALEDARLLVVDWKLDVLCYATKRLPLIYALSKLVVPGLVDQLNTMKKAIMPYLLTQHPQLRPFHFSPPGVLQPITVIYELSYGETEMKQADLTTFSRCVSNLRSLRCQLIVEALSCIVHLALVKHKNLKIMSALSWMLKWSTFSLGWGCAYRSLQTIISWFRLQHYASVDVPSHREIQQALVDIGDKDPSFVGSREWIGAIELSFVLDKLLGVSCKVLNVRSGAELPEKCRELALHFESQGTPIMIGGGVLAYTLLGVDYNEASGDCAFLILDPHYTGNDEHKKIVNGGWCGWKKAVDSKGKNFFLHDKFYNLLLPQRPSMV
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	367	2.2.26 [Sep-21-2011]
Q9STL8	645	Probable Ufm1-specific pr	yes	no	0.953	0.542	0.649	1e-139
Q0INW1	640	Probable Ufm1-specific pr	yes	no	0.978	0.560	0.58	1e-125
Q9NUQ7	469	Ufm1-specific protease 2	yes	no	0.768	0.601	0.405	3e-60
Q5RCS9	469	Ufm1-specific protease 2	yes	no	0.768	0.601	0.405	4e-60
Q94218	589	Probable Ufm1-specific pr	yes	no	0.460	0.286	0.588	2e-59
Q7T347	401	Ufm1-specific protease 2	yes	no	0.465	0.426	0.587	2e-58
Q61UA0	588	Probable Ufm1-specific pr	N/A	no	0.460	0.287	0.577	2e-58
Q5XIB4	461	Ufm1-specific protease 2	yes	no	0.460	0.366	0.588	4e-58
Q5ZIF3	460	Ufm1-specific protease 2	yes	no	0.768	0.613	0.395	4e-58
Q99K23	461	Ufm1-specific protease 2	yes	no	0.749	0.596	0.398	2e-57

>sp|Q9STL8|UFSP_ARATH Probable Ufm1-specific protease OS=Arabidopsis thaliana GN=At3g48380 PE=1 SV=2

 Score =  494 bits (1271), Expect = e-139,   Method: Compositional matrix adjust.
 Identities = 245/377 (64%), Positives = 288/377 (76%), Gaps = 27/377 (7%)

Query: 18  GDKIQVSVLLNTSQKPTKSTAPIAEYYPALEDARLLVVDWKLDVLCYATKRLPLIYALSK 77
            DKI +SVLLN S+K   S AP+AEY+PA+E+ARL+VVD  LDVL YA K LPL++A+S 
Sbjct: 269 ADKIHISVLLNRSEKLPTSGAPVAEYFPAMEEARLIVVDLNLDVLTYAPKDLPLMHAVSN 328

Query: 78  LVVPGLVDQLNTMKKAIMPYLLTQHPQLRPFHFSPPGVLQPITVIYELSYGETEMKQADL 137
           LV+P LVDQL ++KK I+P+LL +HPQLR +HF+PPGVL PIT +YEL+YGETEMKQ D+
Sbjct: 329 LVIPALVDQLYSLKKIILPHLLVEHPQLRIYHFNPPGVLHPITSMYELNYGETEMKQVDV 388

Query: 138 TTFSRCVSNLRSLRCQL-IVEALSCIVHLALVKHKNLK--------------------IM 176
                    L   R  L I  AL   V+     + N +                    + 
Sbjct: 389 RKLLHLRLGLPLDRPLLRIANALDLSVNDDSKSNMNRRGSTLLKDVHIGIPSSGVSEGVA 448

Query: 177 SALSWMLKWSTF------SLGWGCAYRSLQTIISWFRLQHYASVDVPSHREIQQALVDIG 230
           S +    ++  +        GWGCAYRSLQTIISWFRLQHY S+ VPSHREIQQ LV+IG
Sbjct: 449 SIIQGSYEYYHYLQDGFDDSGWGCAYRSLQTIISWFRLQHYTSISVPSHREIQQTLVEIG 508

Query: 231 DKDPSFVGSREWIGAIELSFVLDKLLGVSCKVLNVRSGAELPEKCRELALHFESQGTPIM 290
           DKDPSFVGSREWIGAIELSFVLDKLLGVSCK++N RSG+ELPEKCRELA+HFE+QGTPIM
Sbjct: 509 DKDPSFVGSREWIGAIELSFVLDKLLGVSCKIMNFRSGSELPEKCRELAMHFENQGTPIM 568

Query: 291 IGGGVLAYTLLGVDYNEASGDCAFLILDPHYTGNDEHKKIVNGGWCGWKKAVDSKGKNFF 350
           IGGGVLAYTLLGVDY+E SGDCAFLILDPHYTG+++HKKIVNGGWCGWKKAVDSKGK+FF
Sbjct: 569 IGGGVLAYTLLGVDYDEGSGDCAFLILDPHYTGSEDHKKIVNGGWCGWKKAVDSKGKSFF 628

Query: 351 LHDKFYNLLLPQRPSMV 367
           LH+KFYNLLLPQRP+MV
Sbjct: 629 LHNKFYNLLLPQRPNMV 645

Thiol protease which recognizes and hydrolyzes the peptide bond at the C-terminal Gly of UFM1, an ubiquitin-like modifier protein bound to a number of target proteins.
Arabidopsis thaliana (taxid: 3702)
EC: 3EC: .EC: 4EC: .EC: 2EC: 2EC: .EC: -

>sp|Q0INW1|UFSP_ORYSJ Probable Ufm1-specific protease OS=Oryza sativa subsp. japonica GN=Os12g0285500 PE=2 SV=2

 Score =  447 bits (1150), Expect = e-125,   Method: Compositional matrix adjust.
 Identities = 232/400 (58%), Positives = 279/400 (69%), Gaps = 41/400 (10%)

Query: 2   CTLLF-AKHICPCDLFCGDKIQVSVLLNTSQKPTKSTAPIAEYYPALEDARLLVVDWKLD 60
           C+  F AK          D IQ+++L N S   +K++ P  EY+PA   A L  ++ KLD
Sbjct: 248 CSKFFPAKRSLSLTRENADAIQITILSNQSFNSSKASTPAVEYFPAPALASLRAINLKLD 307

Query: 61  VLCYATKRLPLIYALSKLVVPGLVDQLNTMKKAIMPYLLTQHPQLRPFHFSPPGVLQPIT 120
           +LCY +   P+  A+S+LV+PGL DQL+ MKKAI+  L TQ PQL P+HF PPG+L P+T
Sbjct: 308 ILCYTSVDFPVAAAVSELVIPGLADQLSIMKKAIVSELTTQQPQLSPYHFVPPGLLIPVT 367

Query: 121 VIYELSYGETEMKQADLTTFSRCVSNLRSLRCQLIVEALSCIVHLAL------VKHKNLK 174
            IY+  YGE E KQ++L        NL  LR QL ++     +  AL         K  K
Sbjct: 368 TIYDTRYGEIEEKQSELRR------NLH-LRLQLPLDRPLLRISNALNFSIGGTDKKASK 420

Query: 175 IMSAL---------SWMLKWSTFSL------------------GWGCAYRSLQTIISWFR 207
             S+L         S  +     SL                  GWGCAYRSLQTI+SW+R
Sbjct: 421 SGSSLLRDVHREIPSSGVSGGIISLIDGSYEYYHYLHDGIDDNGWGCAYRSLQTIMSWYR 480

Query: 208 LQHYASVDVPSHREIQQALVDIGDKDPSFVGSREWIGAIELSFVLDKLLGVSCKVLNVRS 267
           LQ Y+S++VPSHREIQQ LV+IGDKDPSF+GSREWIGAIELSFVLDKLLGVSCKV+NVRS
Sbjct: 481 LQQYSSINVPSHREIQQVLVEIGDKDPSFIGSREWIGAIELSFVLDKLLGVSCKVINVRS 540

Query: 268 GAELPEKCRELALHFESQGTPIMIGGGVLAYTLLGVDYNEASGDCAFLILDPHYTGNDEH 327
           G ELPEKCRELA+HFE+QGTP+MIGGGVLAYTLLGVDYNE+SGDCAFLILDPHYTG D+ 
Sbjct: 541 GDELPEKCRELAIHFETQGTPVMIGGGVLAYTLLGVDYNESSGDCAFLILDPHYTGADDL 600

Query: 328 KKIVNGGWCGWKKAVDSKGKNFFLHDKFYNLLLPQRPSMV 367
           KKIVNGGWCGWKK++DSKG++FFL DKFYNLLLPQRP+MV
Sbjct: 601 KKIVNGGWCGWKKSIDSKGRSFFLKDKFYNLLLPQRPNMV 640

Thiol protease which recognizes and hydrolyzes the peptide bond at the C-terminal Gly of ufm-1, an ubiquitin-like modifier protein bound to a number of target proteins.

Oryza sativa subsp. japonica (taxid: 39947)

EC: 3

EC: .

EC: 4

EC: .

EC: 2

EC: 2

EC: .

EC: -

>sp|Q9NUQ7|UFSP2_HUMAN Ufm1-specific protease 2 OS=Homo sapiens GN=UFSP2 PE=2 SV=3

 Score =  233 bits (593), Expect = 3e-60,   Method: Compositional matrix adjust.
 Identities = 128/316 (40%), Positives = 184/316 (58%), Gaps = 34/316 (10%)

Query: 75  LSKLVVPGLVDQLNTMKKAIMPYLL-TQHPQLRPFHFSPPGVLQPITVIYELSYGETEMK 133
           + KL+V  + +QL  M+K I+ Y+  T      P HF  PG    +T+ Y      + + 
Sbjct: 165 VRKLLVDAIHNQLTDMEKCILKYMKGTSIVVPEPLHFLLPGKKNLVTISYP-----SGIP 219

Query: 134 QADLTTFSRCVSNLRSLRCQLIVEALSCIVHLALVKHKNLKIMSALSWM----------- 182
              L  + + + +L +L         S   H     +K+  I +  +++           
Sbjct: 220 DGQLQAYRKELHDLFNLPHDRPYFKRSNAYHFPDEPYKDGYIRNPHTYLNPPNMETGMIY 279

Query: 183 -----------LKWSTFSLGWGCAYRSLQTIISWFRLQHYASVDVPSHREIQQALVDIGD 231
                      ++      GWGCAYRSLQTI SWF+ Q Y    +P+HREIQQALVD GD
Sbjct: 280 VVQGIYGYHHYMQDRIDDNGWGCAYRSLQTICSWFKHQGYTERSIPTHREIQQALVDAGD 339

Query: 232 KDPSFVGSREWIGAIELSFVLDKLLGVSCKVLNVRSGAELPEKCRELALHFESQGTPIMI 291
           K  +FVGSR+WIG+IE+  VL++L+G++ K+L V  G+E+  + RELA HF+S+GTP+MI
Sbjct: 340 KPATFVGSRQWIGSIEVQLVLNQLIGITSKILFVSQGSEIASQGRELANHFQSEGTPVMI 399

Query: 292 GGGVLAYTLLGVDYNEASGDCAFLILDPHYTGNDEHKKIVNGGWCGWKKAVDSKGKNFFL 351
           GGGVLA+T+LGV +NE +G   FLILDPHYTG ++ + I+  GWCGW      KG +F+ 
Sbjct: 400 GGGVLAHTILGVAWNEITGQIKFLILDPHYTGAEDLQVILEKGWCGW------KGPDFWN 453

Query: 352 HDKFYNLLLPQRPSMV 367
            D +YNL LPQRP+M+
Sbjct: 454 KDAYYNLCLPQRPNMI 469

Thiol protease which recognizes and hydrolyzes the peptide bond at the C-terminal Gly of UFM1, an ubiquitin-like modifier protein bound to a number of target proteins. Does not hydrolyze SUMO1 or ISG15 ubiquitin-like proteins.

Homo sapiens (taxid: 9606)

EC: 3

EC: .

EC: 4

EC: .

EC: 2

EC: 2

EC: .

EC: -

>sp|Q5RCS9|UFSP2_PONAB Ufm1-specific protease 2 OS=Pongo abelii GN=UFSP2 PE=2 SV=3

 Score =  232 bits (591), Expect = 4e-60,   Method: Compositional matrix adjust.
 Identities = 128/316 (40%), Positives = 183/316 (57%), Gaps = 34/316 (10%)

Query: 75  LSKLVVPGLVDQLNTMKKAIMPYLL-TQHPQLRPFHFSPPGVLQPITVIYELSYGETEMK 133
           + KL+V  + +QL  M+K I+ Y+  T      P HF  PG    +T+ Y      + + 
Sbjct: 165 VRKLLVDAIHNQLTDMEKCILKYMKGTSIVVPEPLHFLLPGKKNLVTISYP-----SGIP 219

Query: 134 QADLTTFSRCVSNLRSLRCQLIVEALSCIVHLALVKHKNLKIMSALSWM----------- 182
              L  +   + +L +L         S   H     +K+  I +  +++           
Sbjct: 220 DGQLQAYREELHDLFNLPHDRPYFKRSNAYHFPDEPYKDGYIRNPHTYLNPPNMETGMIY 279

Query: 183 -----------LKWSTFSLGWGCAYRSLQTIISWFRLQHYASVDVPSHREIQQALVDIGD 231
                      ++      GWGCAYRSLQTI SWF+ Q Y    +P+HREIQQALVD GD
Sbjct: 280 VVQGIYGYHHYMQDRIDDNGWGCAYRSLQTICSWFKHQGYTERSIPTHREIQQALVDAGD 339

Query: 232 KDPSFVGSREWIGAIELSFVLDKLLGVSCKVLNVRSGAELPEKCRELALHFESQGTPIMI 291
           K  +FVGSR+WIG+IE+  VL++L+G++ K+L V  G+E+  + RELA HF+S+GTP+MI
Sbjct: 340 KPATFVGSRQWIGSIEVQLVLNQLIGITSKILFVSQGSEIASQGRELANHFQSEGTPVMI 399

Query: 292 GGGVLAYTLLGVDYNEASGDCAFLILDPHYTGNDEHKKIVNGGWCGWKKAVDSKGKNFFL 351
           GGGVLA+T+LGV +NE +G   FLILDPHYTG ++ + I+  GWCGW      KG +F+ 
Sbjct: 400 GGGVLAHTILGVAWNEITGQIKFLILDPHYTGAEDLQVILEKGWCGW------KGPDFWN 453

Query: 352 HDKFYNLLLPQRPSMV 367
            D +YNL LPQRP+M+
Sbjct: 454 KDAYYNLCLPQRPNMI 469

Thiol protease which recognizes and hydrolyzes the peptide bond at the C-terminal Gly of UFM1, an ubiquitin-like modifier protein bound to a number of target proteins. Does not hydrolyze SUMO1 or ISG15 ubiquitin-like proteins.

Pongo abelii (taxid: 9601)

EC: 3

EC: .

EC: 4

EC: .

EC: 2

EC: 2

EC: .

EC: -

>sp|Q94218|UFSP_CAEEL Probable Ufm1-specific protease OS=Caenorhabditis elegans GN=F38A5.1 PE=3 SV=1

 Score =  229 bits (584), Expect = 2e-59,   Method: Compositional matrix adjust.
 Identities = 103/175 (58%), Positives = 131/175 (74%), Gaps = 6/175 (3%)

Query: 191 GWGCAYRSLQTIISWFRLQHYASVDVPSHREIQQALVDIGDKDPSFVGSREWIGAIELSF 250
           GWGCAYRS QTI SWF L  Y    VPSHREIQQALVDI DK   FVGSR+WIG+ E+SF
Sbjct: 418 GWGCAYRSFQTIWSWFILNGYTDKPVPSHREIQQALVDIQDKQAKFVGSRQWIGSTEISF 477

Query: 251 VLDKLLGVSCKVLNVRSGAELPEKCRELALHFESQGTPIMIGGGVLAYTLLGVDYNEASG 310
           VL++LL + C+ +   SGAE+ E+ RELA HFE+ GTP+MIGG +LA+T+LGVD+N+ +G
Sbjct: 478 VLNELLKLECRFIATNSGAEVVERVRELARHFETSGTPVMIGGNMLAHTILGVDFNDTTG 537

Query: 311 DCAFLILDPHYTGNDEHKKIVNGGWCGWKKAVDSKGKNFFLHDKFYNLLLPQRPS 365
           +  FL+LDPHYTG+++ K I + GWC WK A      +F+  D FYN++LPQ PS
Sbjct: 538 ETKFLVLDPHYTGSEDIKTITSKGWCAWKPA------SFWSKDHFYNMVLPQPPS 586

Thiol protease which recognizes and hydrolyzes the peptide bond at the C-terminal Gly of ufm-1, an ubiquitin-like modifier protein bound to a number of target proteins.

Caenorhabditis elegans (taxid: 6239)

EC: 3

EC: .

EC: 4

EC: .

EC: 2

EC: 2

EC: .

EC: -

>sp|Q7T347|UFSP2_DANRE Ufm1-specific protease 2 OS=Danio rerio GN=ufsp2 PE=2 SV=1

 Score =  226 bits (576), Expect = 2e-58,   Method: Compositional matrix adjust.
 Identities = 104/177 (58%), Positives = 134/177 (75%), Gaps = 6/177 (3%)

Query: 191 GWGCAYRSLQTIISWFRLQHYASVDVPSHREIQQALVDIGDKDPSFVGSREWIGAIELSF 250
           GWGCAYRSLQTI SWF+ Q Y    VP+H +IQQALVD+GDK+P FVGSR+WIG+IE+  
Sbjct: 231 GWGCAYRSLQTICSWFQQQGYVETAVPTHTQIQQALVDVGDKEPRFVGSRQWIGSIEVQA 290

Query: 251 VLDKLLGVSCKVLNVRSGAELPEKCRELALHFESQGTPIMIGGGVLAYTLLGVDYNEASG 310
           VL++LLGV+ K++ V  G+EL  K RELA HF ++GTP+MIGGGVLA+T+LGV ++E +G
Sbjct: 291 VLNQLLGVTSKIMFVSQGSELATKGRELANHFHTEGTPVMIGGGVLAHTILGVAWSENTG 350

Query: 311 DCAFLILDPHYTGNDEHKKIVNGGWCGWKKAVDSKGKNFFLHDKFYNLLLPQRPSMV 367
           +  FLILDPHYTG ++ + I + GWCGW      KG  F+  + +YNL LPQRP  V
Sbjct: 351 EIRFLILDPHYTGGEDLQIITDKGWCGW------KGPEFWDQNAYYNLCLPQRPKTV 401

Thiol protease which recognizes and hydrolyzes the peptide bond at the C-terminal Gly of UFM1, an ubiquitin-like modifier protein bound to a number of target proteins. Does not hydrolyze SUMO1 or ISG15 ubiquitin-like proteins.

Danio rerio (taxid: 7955)

EC: 3

EC: .

EC: 4

EC: .

EC: 2

EC: 2

EC: .

EC: -

>sp|Q61UA0|UFSP_CAEBR Probable Ufm1-specific protease OS=Caenorhabditis briggsae GN=CBG05410 PE=3 SV=1

 Score =  226 bits (576), Expect = 2e-58,   Method: Compositional matrix adjust.
 Identities = 101/175 (57%), Positives = 132/175 (75%), Gaps = 6/175 (3%)

Query: 191 GWGCAYRSLQTIISWFRLQHYASVDVPSHREIQQALVDIGDKDPSFVGSREWIGAIELSF 250
           GWGCAYRS QTI SWF L  Y    VPSHR+IQQALV+IGDK+  FVGSR+WIG+ E+S+
Sbjct: 417 GWGCAYRSFQTIWSWFILNGYTDKPVPSHRDIQQALVNIGDKEQKFVGSRQWIGSTEISY 476

Query: 251 VLDKLLGVSCKVLNVRSGAELPEKCRELALHFESQGTPIMIGGGVLAYTLLGVDYNEASG 310
           VL++LL + C+ +   SGAE+ E+ RELA HFE+ GTP+MIGG +LA+T+LGVD+NE +G
Sbjct: 477 VLNELLKLECRFIATNSGAEVVERARELARHFETSGTPVMIGGNMLAHTILGVDFNEMTG 536

Query: 311 DCAFLILDPHYTGNDEHKKIVNGGWCGWKKAVDSKGKNFFLHDKFYNLLLPQRPS 365
           +  FLILDPHYTG+++ K I + GWC WK A      +F+  D FYN++L Q P+
Sbjct: 537 ETKFLILDPHYTGSEDIKTITSKGWCAWKPA------SFWSADHFYNMVLAQPPT 585

Thiol protease which recognizes and hydrolyzes the peptide bond at the C-terminal Gly of ufm-1, an ubiquitin-like modifier protein bound to a number of target proteins.

Caenorhabditis briggsae (taxid: 6238)

EC: 3

EC: .

EC: 4

EC: .

EC: 2

EC: 2

EC: .

EC: -

>sp|Q5XIB4|UFSP2_RAT Ufm1-specific protease 2 OS=Rattus norvegicus GN=Ufsp2 PE=2 SV=1

 Score =  225 bits (574), Expect = 4e-58,   Method: Compositional matrix adjust.
 Identities = 103/175 (58%), Positives = 133/175 (76%), Gaps = 6/175 (3%)

Query: 191 GWGCAYRSLQTIISWFRLQHYASVDVPSHREIQQALVDIGDKDPSFVGSREWIGAIELSF 250
           GWGCAYRSLQT+ SWFR Q Y    +P+HREIQQALVD GDK  +FVGSR+WIG+IE+  
Sbjct: 291 GWGCAYRSLQTVCSWFRHQGYTERAIPTHREIQQALVDAGDKPATFVGSRQWIGSIEVQL 350

Query: 251 VLDKLLGVSCKVLNVRSGAELPEKCRELALHFESQGTPIMIGGGVLAYTLLGVDYNEASG 310
           VL++L+GV+ K+L V  G+E+  + RELA HF++ GTP+MIGGGVLA+T+LGV +NE +G
Sbjct: 351 VLNQLIGVTSKILFVNQGSEMASQGRELANHFQNVGTPVMIGGGVLAHTILGVAWNETTG 410

Query: 311 DCAFLILDPHYTGNDEHKKIVNGGWCGWKKAVDSKGKNFFLHDKFYNLLLPQRPS 365
              FLILDPHYTG ++ + I+  GWCGW      KG +F+  D +YNL LPQRP+
Sbjct: 411 QIKFLILDPHYTGAEDLQVILEKGWCGW------KGPDFWNKDAYYNLCLPQRPN 459

Thiol protease which recognizes and hydrolyzes the peptide bond at the C-terminal Gly of UFM1, an ubiquitin-like modifier protein bound to a number of target proteins. Does not hydrolyze SUMO1 or ISG15 ubiquitin-like proteins.

Rattus norvegicus (taxid: 10116)

EC: 3

EC: .

EC: 4

EC: .

EC: 2

EC: 2

EC: .

EC: -

>sp|Q5ZIF3|UFSP2_CHICK Ufm1-specific protease 2 OS=Gallus gallus GN=UFSP2 PE=2 SV=1

 Score =  225 bits (574), Expect = 4e-58,   Method: Compositional matrix adjust.
 Identities = 125/316 (39%), Positives = 180/316 (56%), Gaps = 34/316 (10%)

Query: 75  LSKLVVPGLVDQLNTMKKAIMPYLL-TQHPQLRPFHFSPPGVLQPITVIYELSYGETEMK 133
           +  L+V  +  QL  M++ IM Y+  T       FHF  PG    +T+ Y      T + 
Sbjct: 156 VQNLLVKAIHKQLTDMERCIMKYMKGTSIVVPEQFHFMLPGKNHLVTISYP-----TGIS 210

Query: 134 QADLTTFSRCVSNLRSLRCQLIVEALSCIVHL-------ALVKHKNLKIMS--------- 177
              L ++ + +  L +L C       +   H          +K+ +L + S         
Sbjct: 211 DDQLESYRKELHGLFNLPCDRPYFKRANAYHFPDEPYKDGYLKNPHLHLNSPGPESGVVY 270

Query: 178 ------ALSWMLKWSTFSLGWGCAYRSLQTIISWFRLQHYASVDVPSHREIQQALVDIGD 231
                 +    ++  T   GWGCAYRSLQTI SWF+ Q Y    +P+H+EIQQALVD GD
Sbjct: 271 LVHGTYSYHHYMQDRTDDSGWGCAYRSLQTICSWFKQQGYVDAPIPTHKEIQQALVDAGD 330

Query: 232 KDPSFVGSREWIGAIELSFVLDKLLGVSCKVLNVRSGAELPEKCRELALHFESQGTPIMI 291
           K  +FVGSR+WIG++E+  VL++L G++ K+L V  G+EL  + RELA HF+++GTP+MI
Sbjct: 331 KPAAFVGSRQWIGSVEVQLVLNQLFGITSKILFVSQGSELALQGRELANHFKTEGTPVMI 390

Query: 292 GGGVLAYTLLGVDYNEASGDCAFLILDPHYTGNDEHKKIVNGGWCGWKKAVDSKGKNFFL 351
           GGGVLA+T+LGV +NE +G   +LILDPHYTG ++   I++ GWC W      KG +F+ 
Sbjct: 391 GGGVLAHTILGVAWNEMTGQIKYLILDPHYTGGEDLHVILDKGWCAW------KGPDFWS 444

Query: 352 HDKFYNLLLPQRPSMV 367
            D +YNL LPQRP  +
Sbjct: 445 KDAYYNLCLPQRPKTI 460

Thiol protease which recognizes and hydrolyzes the peptide bond at the C-terminal Gly of UFM1, an ubiquitin-like modifier protein bound to a number of target proteins. Does not hydrolyze SUMO1 or ISG15 ubiquitin-like proteins.

Gallus gallus (taxid: 9031)

EC: 3

EC: .

EC: 4

EC: .

EC: 2

EC: 2

EC: .

EC: -

>sp|Q99K23|UFSP2_MOUSE Ufm1-specific protease 2 OS=Mus musculus GN=Ufsp2 PE=1 SV=1

 Score =  223 bits (567), Expect = 2e-57,   Method: Compositional matrix adjust.
 Identities = 127/319 (39%), Positives = 181/319 (56%), Gaps = 44/319 (13%)

Query: 75  LSKLVVPGLVDQLNTMKKAIMPYLL-TQHPQLRPFHFSPPGVLQPITVIYELSYGETEMK 133
           + KL+V  ++ QL  ++K I+ Y+  T      P HF  PG    +TV+Y     + +++
Sbjct: 157 VRKLLVDAILRQLVDVEKCILRYMKGTSIVVPEPLHFQLPGKKNLVTVLYPSGIPDDQLQ 216

Query: 134 Q------------ADLTTFSRCVSN-----------LRSLRCQL----IVEALSCIVHLA 166
                         D   F R  +            +R+    L    I  ++ C+V   
Sbjct: 217 AYRKELHDLFNLPHDRPYFKRINAYHFPDELYKDGYIRNPHTYLSPPNIEGSMICVVQGT 276

Query: 167 LVKHKNLKIMSALSWMLKWSTFSLGWGCAYRSLQTIISWFRLQHYASVDVPSHREIQQAL 226
              H  ++     +          GWGCAYRSLQTI SWFR Q Y    +P+HREIQQAL
Sbjct: 277 YAYHHYMQDRIDDN----------GWGCAYRSLQTICSWFRHQGYTERSIPTHREIQQAL 326

Query: 227 VDIGDKDPSFVGSREWIGAIELSFVLDKLLGVSCKVLNVRSGAELPEKCRELALHFESQG 286
           VD GDK  +FVGSR+WIG+IE+  VL++L+GV+ K+L V  G+E+  + RELA HF++ G
Sbjct: 327 VDAGDKPATFVGSRQWIGSIEVQMVLNQLIGVTSKILFVNQGSEMASQGRELANHFQNVG 386

Query: 287 TPIMIGGGVLAYTLLGVDYNEASGDCAFLILDPHYTGNDEHKKIVNGGWCGWKKAVDSKG 346
           TP+M+GGGVLA+T+LGV +NE +G   FLILDPHYTG ++ + ++  GWCGWK       
Sbjct: 387 TPVMVGGGVLAHTILGVAWNETTGQIKFLILDPHYTGAEDLQVMLEKGWCGWKSP----- 441

Query: 347 KNFFLHDKFYNLLLPQRPS 365
            +F+  D +YNL LPQRP+
Sbjct: 442 -DFWNKDAYYNLCLPQRPN 459

Thiol protease which recognizes and hydrolyzes the peptide bond at the C-terminal Gly of UFM1, an ubiquitin-like modifier protein bound to a number of target proteins. Does not hydrolyze SUMO1 or ISG15 ubiquitin-like proteins.

Mus musculus (taxid: 10090)

EC: 3

EC: .

EC: 4

EC: .

EC: 2

EC: 2

EC: .

EC: -

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	367
147801866	631	hypothetical protein VITISV_002653 [Viti	0.945	0.549	0.675	1e-145
225456804	662	PREDICTED: probable Ufm1-specific protea	0.945	0.524	0.650	1e-143
297733648	647	unnamed protein product [Vitis vinifera]	0.945	0.536	0.650	1e-142
356507315	646	PREDICTED: probable Ufm1-specific protea	0.945	0.537	0.639	1e-138
255540417	650	conserved hypothetical protein [Ricinus	0.929	0.524	0.656	1e-138
22331688	645	putative Ufm1-specific protease [Arabido	0.953	0.542	0.649	1e-137
356518925	646	PREDICTED: probable Ufm1-specific protea	0.945	0.537	0.634	1e-136
297816032	641	hypothetical protein ARALYDRAFT_485198 [	0.942	0.539	0.641	1e-134
449469753	647	PREDICTED: probable Ufm1-specific protea	0.997	0.565	0.643	1e-133
449525257	640	PREDICTED: LOW QUALITY PROTEIN: probable	0.997	0.571	0.648	1e-133

>gi|147801866|emb|CAN74983.1| hypothetical protein VITISV_002653 [Vitis vinifera]

 Score =  520 bits (1339), Expect = e-145,   Method: Compositional matrix adjust.
 Identities = 262/388 (67%), Positives = 296/388 (76%), Gaps = 41/388 (10%)

Query: 12  PCDLFC-----------GDKIQVSVLLNTSQKPTKSTAPIAEYYPALEDARLLVVDWKLD 60
           PC  FC            D IQVS+LLN S+  +KS APIAEY+PA E  +LLVVD+KL+
Sbjct: 253 PCSYFCSKNKAVFSVEHADIIQVSLLLNKSRTSSKSAAPIAEYFPASEQTKLLVVDYKLE 312

Query: 61  VLCYATKRLPLIYALSKLVVPGLVDQLNTMKKAIMPYLLTQHPQLRPFHFSPPGVLQPIT 120
           VLCYA K LP+ YA+SKLVVPGLVDQLN++K  I+P LLTQH QL P+HF PPG L PIT
Sbjct: 313 VLCYAAKDLPVTYAVSKLVVPGLVDQLNSIKNTILPNLLTQHLQLHPYHFCPPGFLHPIT 372

Query: 121 VIYELSYGETEMKQADLTTFSRCVSNLRSLRCQL----------IVEALSCIVHLALVKH 170
           VIYELSYGETEMKQ ++          RSL  +L          I  AL+        K 
Sbjct: 373 VIYELSYGETEMKQVEVR---------RSLHSRLGLPFDRPLLRIANALNLSTTKDSAKS 423

Query: 171 KNLKIMSALSWMLKWSTFSL-----------GWGCAYRSLQTIISWFRLQHYASVDVPSH 219
            +++ +S     L   ++             GWGCAYRSLQTI+SWFR QHY+S++VPSH
Sbjct: 424 NSIRKVSGGVVSLVQGSYEYYHYLQDGFDDSGWGCAYRSLQTIVSWFRCQHYSSIEVPSH 483

Query: 220 REIQQALVDIGDKDPSFVGSREWIGAIELSFVLDKLLGVSCKVLNVRSGAELPEKCRELA 279
           REIQQALV+IGDKDPSFVGSREWIGAIELSFVLDKLLGVSCKV+NVRSGAELPEKCRELA
Sbjct: 484 REIQQALVEIGDKDPSFVGSREWIGAIELSFVLDKLLGVSCKVINVRSGAELPEKCRELA 543

Query: 280 LHFESQGTPIMIGGGVLAYTLLGVDYNEASGDCAFLILDPHYTGNDEHKKIVNGGWCGWK 339
           LHFE+QGTPIMIGGGVLAYTLLGVDYNE+SGDCAFLILDPHYTGND+ KKIVNGGWCGWK
Sbjct: 544 LHFENQGTPIMIGGGVLAYTLLGVDYNESSGDCAFLILDPHYTGNDDLKKIVNGGWCGWK 603

Query: 340 KAVDSKGKNFFLHDKFYNLLLPQRPSMV 367
           KAVDS+GKNFFLHDKFYNLLLPQRP+MV
Sbjct: 604 KAVDSRGKNFFLHDKFYNLLLPQRPNMV 631

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225456804|ref|XP_002275692.1| PREDICTED: probable Ufm1-specific protease-like [Vitis vinifera]

 Score =  512 bits (1319), Expect = e-143,   Method: Compositional matrix adjust.
 Identities = 263/404 (65%), Positives = 297/404 (73%), Gaps = 57/404 (14%)

Query: 12  PCDLFC-----------GDKIQVSVLLNTSQKPTKSTAPIAEYYPALEDARLLVVDWKLD 60
           PC  FC            D IQVS+LLN S+  +KS APIAEY+PA E  +LLVVD+KL+
Sbjct: 268 PCSYFCSKNKAVFSVEHADIIQVSLLLNKSRTSSKSAAPIAEYFPASEQTKLLVVDYKLE 327

Query: 61  VLCYATKRLPLIYALSKLVVPGLVDQLNTMKKAIMPYLLTQHPQLRPFHFSPPGVLQPIT 120
           VLCYA K LP+ YA+SKLVVPGLVDQLN++K  I+P LLTQH QL P+HF PPG L PIT
Sbjct: 328 VLCYAAKDLPVTYAVSKLVVPGLVDQLNSIKNTILPNLLTQHLQLHPYHFCPPGFLHPIT 387

Query: 121 VIYELSYGETEMKQADLTTFSRCVSNLRSLRCQL----------IVEALSCIVHLALVKH 170
           VIYELSYGETEMKQ ++          RSL  +L          I  AL+        K 
Sbjct: 388 VIYELSYGETEMKQVEVR---------RSLHSRLGLPFDRPLLRIANALNLSTTKDSAKS 438

Query: 171 KNLKIMSAL----------------SWMLKWSTFSL-----------GWGCAYRSLQTII 203
            +++  S+L                   L   ++             GWGCAYRSLQTI+
Sbjct: 439 NSIRKGSSLLRDVHVGIPSSGVSGGVVSLVQGSYEYYHYLQDGFDDSGWGCAYRSLQTIV 498

Query: 204 SWFRLQHYASVDVPSHREIQQALVDIGDKDPSFVGSREWIGAIELSFVLDKLLGVSCKVL 263
           SWFR QHY+S++VPSHREIQQALV+IGDKDPSFVGSREWIGAIELSFVLDKLLGVSCKV+
Sbjct: 499 SWFRCQHYSSIEVPSHREIQQALVEIGDKDPSFVGSREWIGAIELSFVLDKLLGVSCKVI 558

Query: 264 NVRSGAELPEKCRELALHFESQGTPIMIGGGVLAYTLLGVDYNEASGDCAFLILDPHYTG 323
           NVRSGAELPEKCRELALHFE+QGTPIMIGGGVLAYTLLGVDYNE+SGDCAFLILDPHYTG
Sbjct: 559 NVRSGAELPEKCRELALHFENQGTPIMIGGGVLAYTLLGVDYNESSGDCAFLILDPHYTG 618

Query: 324 NDEHKKIVNGGWCGWKKAVDSKGKNFFLHDKFYNLLLPQRPSMV 367
           ND+ KKIVNGGWCGWKKAVDS+GKNFFLHDKFYNLLLPQRP+MV
Sbjct: 619 NDDLKKIVNGGWCGWKKAVDSRGKNFFLHDKFYNLLLPQRPNMV 662

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297733648|emb|CBI14895.3| unnamed protein product [Vitis vinifera]

 Score =  511 bits (1317), Expect = e-142,   Method: Compositional matrix adjust.
 Identities = 263/404 (65%), Positives = 297/404 (73%), Gaps = 57/404 (14%)

Query: 12  PCDLFC-----------GDKIQVSVLLNTSQKPTKSTAPIAEYYPALEDARLLVVDWKLD 60
           PC  FC            D IQVS+LLN S+  +KS APIAEY+PA E  +LLVVD+KL+
Sbjct: 253 PCSYFCSKNKAVFSVEHADIIQVSLLLNKSRTSSKSAAPIAEYFPASEQTKLLVVDYKLE 312

Query: 61  VLCYATKRLPLIYALSKLVVPGLVDQLNTMKKAIMPYLLTQHPQLRPFHFSPPGVLQPIT 120
           VLCYA K LP+ YA+SKLVVPGLVDQLN++K  I+P LLTQH QL P+HF PPG L PIT
Sbjct: 313 VLCYAAKDLPVTYAVSKLVVPGLVDQLNSIKNTILPNLLTQHLQLHPYHFCPPGFLHPIT 372

Query: 121 VIYELSYGETEMKQADLTTFSRCVSNLRSLRCQL----------IVEALSCIVHLALVKH 170
           VIYELSYGETEMKQ ++          RSL  +L          I  AL+        K 
Sbjct: 373 VIYELSYGETEMKQVEVR---------RSLHSRLGLPFDRPLLRIANALNLSTTKDSAKS 423

Query: 171 KNLKIMSAL----------------SWMLKWSTFSL-----------GWGCAYRSLQTII 203
            +++  S+L                   L   ++             GWGCAYRSLQTI+
Sbjct: 424 NSIRKGSSLLRDVHVGIPSSGVSGGVVSLVQGSYEYYHYLQDGFDDSGWGCAYRSLQTIV 483

Query: 204 SWFRLQHYASVDVPSHREIQQALVDIGDKDPSFVGSREWIGAIELSFVLDKLLGVSCKVL 263
           SWFR QHY+S++VPSHREIQQALV+IGDKDPSFVGSREWIGAIELSFVLDKLLGVSCKV+
Sbjct: 484 SWFRCQHYSSIEVPSHREIQQALVEIGDKDPSFVGSREWIGAIELSFVLDKLLGVSCKVI 543

Query: 264 NVRSGAELPEKCRELALHFESQGTPIMIGGGVLAYTLLGVDYNEASGDCAFLILDPHYTG 323
           NVRSGAELPEKCRELALHFE+QGTPIMIGGGVLAYTLLGVDYNE+SGDCAFLILDPHYTG
Sbjct: 544 NVRSGAELPEKCRELALHFENQGTPIMIGGGVLAYTLLGVDYNESSGDCAFLILDPHYTG 603

Query: 324 NDEHKKIVNGGWCGWKKAVDSKGKNFFLHDKFYNLLLPQRPSMV 367
           ND+ KKIVNGGWCGWKKAVDS+GKNFFLHDKFYNLLLPQRP+MV
Sbjct: 604 NDDLKKIVNGGWCGWKKAVDSRGKNFFLHDKFYNLLLPQRPNMV 647

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356507315|ref|XP_003522413.1| PREDICTED: probable Ufm1-specific protease-like [Glycine max]

 Score =  496 bits (1277), Expect = e-138,   Method: Compositional matrix adjust.
 Identities = 243/380 (63%), Positives = 291/380 (76%), Gaps = 33/380 (8%)

Query: 18  GDKIQVSVLLNTSQKPTKSTAPIAEYYPALEDARLLVVDWKLDVLCYATKRLPLIYALSK 77
            D IQVSVL N+    + ST P+AEY+P  E+ RLLVVD KLDVLCY+++ LPL YA+S 
Sbjct: 270 ADTIQVSVLFNSLGSSSASTVPVAEYFPVQEETRLLVVDIKLDVLCYSSRELPLKYAVSN 329

Query: 78  LVVPGLVDQLNTMKKAIMPYLLTQHPQLRPFHFSPPGVLQPITVIYELSYGETEMKQADL 137
           L++PGLVDQLN ++K ++P LL QHP+L+ +HFSPPG+L PITV YELS+GETEMKQ ++
Sbjct: 330 LIIPGLVDQLNVVQKLMLPNLLAQHPRLKSYHFSPPGILHPITVFYELSFGETEMKQVEV 389

Query: 138 TTFSRCVSNLRSLRCQLIVEALSCIVHLALVKHKNLKIMSALSWMLK------------W 185
               R + +   L     +  +S  +  + +K+ ++  +   S +L+             
Sbjct: 390 R---RSLHSRLGLPYDRPLLRISNALDFSKLKNNDMVSLQKGSTLLRDVHIGIPSSGVTG 446

Query: 186 STFSL------------------GWGCAYRSLQTIISWFRLQHYASVDVPSHREIQQALV 227
            T SL                  GWGCAYRSLQTIISWFRLQ+Y S++VPSHREIQQ LV
Sbjct: 447 GTVSLVQGSYEYFHYLHNGYNDSGWGCAYRSLQTIISWFRLQNYTSIEVPSHREIQQTLV 506

Query: 228 DIGDKDPSFVGSREWIGAIELSFVLDKLLGVSCKVLNVRSGAELPEKCRELALHFESQGT 287
           +IGDKDPSFVGSR+WIGAIELSFVLDKLLGV+CKV+NVRSGAELPEKCRELA+HFE+Q T
Sbjct: 507 EIGDKDPSFVGSRDWIGAIELSFVLDKLLGVTCKVINVRSGAELPEKCRELAMHFENQST 566

Query: 288 PIMIGGGVLAYTLLGVDYNEASGDCAFLILDPHYTGNDEHKKIVNGGWCGWKKAVDSKGK 347
           P+MIGGGVLAYTLLGVDYNEASGDCAFLILDPHYTG+D+ KKIVNGGWCGWKKAVDSKGK
Sbjct: 567 PVMIGGGVLAYTLLGVDYNEASGDCAFLILDPHYTGSDDLKKIVNGGWCGWKKAVDSKGK 626

Query: 348 NFFLHDKFYNLLLPQRPSMV 367
           NFFLHDKFYNLLLPQRP+MV
Sbjct: 627 NFFLHDKFYNLLLPQRPNMV 646

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255540417|ref|XP_002511273.1| conserved hypothetical protein [Ricinus communis] gi|223550388|gb|EEF51875.1| conserved hypothetical protein [Ricinus communis]

 Score =  496 bits (1277), Expect = e-138,   Method: Compositional matrix adjust.
 Identities = 254/387 (65%), Positives = 293/387 (75%), Gaps = 46/387 (11%)

Query: 18  GDKIQVSVLLNTSQKPTKSTAPIAEYYPALEDARLLVVDWKLDVLCYATKRLPLIYALSK 77
            D I V+VLLN SQK   S APIAEY+PAL DAR LVV ++LDVLCYA K L LIYA+SK
Sbjct: 273 ADVILVTVLLNRSQKSPLSVAPIAEYFPALGDARFLVVHFELDVLCYADKDLSLIYAVSK 332

Query: 78  LVVPGLVDQLNTMKKAIMPYLLTQHPQLRPFHFSPPGVLQPITVIYELSYGETEMKQADL 137
           L++PGLVDQL++MKKAI+P LL +HPQL  +HF+PPG+L PITV+YEL+YGETE+KQ ++
Sbjct: 333 LIIPGLVDQLHSMKKAILPNLLAEHPQLHSYHFNPPGLLHPITVVYELNYGETELKQVEV 392

Query: 138 TTFSRCVSNLRSLRCQL----------IVEAL------------SCIVHLALVKHKNLKI 175
                     RSL  +L          +  AL            S    L+L+K  +L I
Sbjct: 393 R---------RSLHLRLGLPFDRPLLRVANALDFSTAKDSSGGNSRRKGLSLLKDVHLGI 443

Query: 176 MSA---------------LSWMLKWSTFSLGWGCAYRSLQTIISWFRLQHYASVDVPSHR 220
            S+                   L+      GWGCAYRSLQTIISWFRLQHY S++VPSHR
Sbjct: 444 PSSGVSGGIVALVQGSYDYHHYLQDGFDDSGWGCAYRSLQTIISWFRLQHYTSIEVPSHR 503

Query: 221 EIQQALVDIGDKDPSFVGSREWIGAIELSFVLDKLLGVSCKVLNVRSGAELPEKCRELAL 280
           EIQQ+LV+IGDKDPSF+GSR+WIGAIELSFVLDKLLGV+ K++NVRSGAEL EKCRELAL
Sbjct: 504 EIQQSLVEIGDKDPSFIGSRDWIGAIELSFVLDKLLGVTSKIINVRSGAELLEKCRELAL 563

Query: 281 HFESQGTPIMIGGGVLAYTLLGVDYNEASGDCAFLILDPHYTGNDEHKKIVNGGWCGWKK 340
           HFE+QGTPIMIGGGVLAYTLLGV YNE SGDCAFLILDPHYTGNDEHKKI+NGGWCGWKK
Sbjct: 564 HFETQGTPIMIGGGVLAYTLLGVHYNEVSGDCAFLILDPHYTGNDEHKKIINGGWCGWKK 623

Query: 341 AVDSKGKNFFLHDKFYNLLLPQRPSMV 367
           AVDSKGK+FFLHDKFYNLLLPQRP+MV
Sbjct: 624 AVDSKGKSFFLHDKFYNLLLPQRPNMV 650

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|22331688|ref|NP_680114.1| putative Ufm1-specific protease [Arabidopsis thaliana] gi|134035353|sp|Q9STL8.2|UFSP_ARATH RecName: Full=Probable Ufm1-specific protease; Short=UfSP gi|332644887|gb|AEE78408.1| putative Ufm1-specific protease [Arabidopsis thaliana]

 Score =  494 bits (1271), Expect = e-137,   Method: Compositional matrix adjust.
 Identities = 245/377 (64%), Positives = 288/377 (76%), Gaps = 27/377 (7%)

Query: 18  GDKIQVSVLLNTSQKPTKSTAPIAEYYPALEDARLLVVDWKLDVLCYATKRLPLIYALSK 77
            DKI +SVLLN S+K   S AP+AEY+PA+E+ARL+VVD  LDVL YA K LPL++A+S 
Sbjct: 269 ADKIHISVLLNRSEKLPTSGAPVAEYFPAMEEARLIVVDLNLDVLTYAPKDLPLMHAVSN 328

Query: 78  LVVPGLVDQLNTMKKAIMPYLLTQHPQLRPFHFSPPGVLQPITVIYELSYGETEMKQADL 137
           LV+P LVDQL ++KK I+P+LL +HPQLR +HF+PPGVL PIT +YEL+YGETEMKQ D+
Sbjct: 329 LVIPALVDQLYSLKKIILPHLLVEHPQLRIYHFNPPGVLHPITSMYELNYGETEMKQVDV 388

Query: 138 TTFSRCVSNLRSLRCQL-IVEALSCIVHLALVKHKNLK--------------------IM 176
                    L   R  L I  AL   V+     + N +                    + 
Sbjct: 389 RKLLHLRLGLPLDRPLLRIANALDLSVNDDSKSNMNRRGSTLLKDVHIGIPSSGVSEGVA 448

Query: 177 SALSWMLKWSTF------SLGWGCAYRSLQTIISWFRLQHYASVDVPSHREIQQALVDIG 230
           S +    ++  +        GWGCAYRSLQTIISWFRLQHY S+ VPSHREIQQ LV+IG
Sbjct: 449 SIIQGSYEYYHYLQDGFDDSGWGCAYRSLQTIISWFRLQHYTSISVPSHREIQQTLVEIG 508

Query: 231 DKDPSFVGSREWIGAIELSFVLDKLLGVSCKVLNVRSGAELPEKCRELALHFESQGTPIM 290
           DKDPSFVGSREWIGAIELSFVLDKLLGVSCK++N RSG+ELPEKCRELA+HFE+QGTPIM
Sbjct: 509 DKDPSFVGSREWIGAIELSFVLDKLLGVSCKIMNFRSGSELPEKCRELAMHFENQGTPIM 568

Query: 291 IGGGVLAYTLLGVDYNEASGDCAFLILDPHYTGNDEHKKIVNGGWCGWKKAVDSKGKNFF 350
           IGGGVLAYTLLGVDY+E SGDCAFLILDPHYTG+++HKKIVNGGWCGWKKAVDSKGK+FF
Sbjct: 569 IGGGVLAYTLLGVDYDEGSGDCAFLILDPHYTGSEDHKKIVNGGWCGWKKAVDSKGKSFF 628

Query: 351 LHDKFYNLLLPQRPSMV 367
           LH+KFYNLLLPQRP+MV
Sbjct: 629 LHNKFYNLLLPQRPNMV 645

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356518925|ref|XP_003528126.1| PREDICTED: probable Ufm1-specific protease-like [Glycine max]

 Score =  489 bits (1259), Expect = e-136,   Method: Compositional matrix adjust.
 Identities = 241/380 (63%), Positives = 289/380 (76%), Gaps = 33/380 (8%)

Query: 18  GDKIQVSVLLNTSQKPTKSTAPIAEYYPALEDARLLVVDWKLDVLCYATKRLPLIYALSK 77
            D IQVSVL N+    + ST P+AEY+P  E+ RLL+VD KLDVLCY++++LPL YA+S 
Sbjct: 270 ADIIQVSVLFNSLGSSSASTVPVAEYFPVQEETRLLIVDIKLDVLCYSSRKLPLKYAISS 329

Query: 78  LVVPGLVDQLNTMKKAIMPYLLTQHPQLRPFHFSPPGVLQPITVIYELSYGETEMKQADL 137
           L++PGLVDQLN ++K ++P LL QHP L+ +HFSPPG+L PITV YELS+GETEMKQ ++
Sbjct: 330 LIIPGLVDQLNVVQKLMLPNLLAQHPWLKSYHFSPPGILHPITVFYELSFGETEMKQVEV 389

Query: 138 TTFSRCVSNLRSLRCQLIVEALSCIVHLALVKHKNLKIMSALSWMLK------------W 185
               R + +   L     +  +S  +  + + + ++  +   S +L+             
Sbjct: 390 R---RSLHSRLGLPYDRPLLRISNALDFSKLNNNDMVSLQKGSTLLRDVHIGIPSSGVTG 446

Query: 186 STFSL------------------GWGCAYRSLQTIISWFRLQHYASVDVPSHREIQQALV 227
            T SL                  GWGCAYRSLQTIISWFRLQ+Y S++VPSHREIQQ LV
Sbjct: 447 GTVSLVQGSYEYFHYLHDGYNDSGWGCAYRSLQTIISWFRLQNYTSIEVPSHREIQQTLV 506

Query: 228 DIGDKDPSFVGSREWIGAIELSFVLDKLLGVSCKVLNVRSGAELPEKCRELALHFESQGT 287
           +IGDKDPSFVGSR+WIGAIELSFVLDKLLGV+CKV+NVRSGAELPE+CRELALHFE+Q T
Sbjct: 507 EIGDKDPSFVGSRDWIGAIELSFVLDKLLGVTCKVINVRSGAELPERCRELALHFENQST 566

Query: 288 PIMIGGGVLAYTLLGVDYNEASGDCAFLILDPHYTGNDEHKKIVNGGWCGWKKAVDSKGK 347
           P+MIGGGVLAYTLLGVDYNEASGDCAFLILDPHYTG+D+ KKIVNGGWCGWKKAVDSKGK
Sbjct: 567 PVMIGGGVLAYTLLGVDYNEASGDCAFLILDPHYTGSDDLKKIVNGGWCGWKKAVDSKGK 626

Query: 348 NFFLHDKFYNLLLPQRPSMV 367
           NFFLHDKFYNLLLPQRP MV
Sbjct: 627 NFFLHDKFYNLLLPQRPHMV 646

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297816032|ref|XP_002875899.1| hypothetical protein ARALYDRAFT_485198 [Arabidopsis lyrata subsp. lyrata] gi|297321737|gb|EFH52158.1| hypothetical protein ARALYDRAFT_485198 [Arabidopsis lyrata subsp. lyrata]

 Score =  482 bits (1241), Expect = e-134,   Method: Compositional matrix adjust.
 Identities = 242/377 (64%), Positives = 281/377 (74%), Gaps = 31/377 (8%)

Query: 18  GDKIQVSVLLNTSQKPTKSTAPIAEYYPALEDARLLVVDWKLDVLCYATKRLPLIYALSK 77
            DKI +SVLLN S+K   S  P+AEY+PA+E+ARL+VVD  LDVL YA K LPL++A S 
Sbjct: 269 ADKIHISVLLNRSEKSPTSGTPVAEYFPAMEEARLIVVDLNLDVLVYAPKDLPLMHAASN 328

Query: 78  LVVPGLVDQLNTMKKAIMPYLLTQHPQLRPFHFSPPGVLQPITVIYELSYGETEMKQAD- 136
           LV+P LVDQL ++KK I+PYLL     LR +HFSPPGVL PIT IYEL+YGETEMKQ D 
Sbjct: 329 LVIPALVDQLYSLKKIILPYLL----MLRIYHFSPPGVLHPITTIYELNYGETEMKQVDV 384

Query: 137 ------------------------LTTFSRCVSNLRSLRCQLIVEALSCIVHLALVKHKN 172
                                   L+       N++     L+ +    I    + +   
Sbjct: 385 RKSLHLRLGLPLDRPLLRTANALDLSVNDDSRGNIKKRGSFLLKDVHIGIPSSGVAEGVA 444

Query: 173 LKIMSALSWM--LKWSTFSLGWGCAYRSLQTIISWFRLQHYASVDVPSHREIQQALVDIG 230
             I  +  +   L+ S    GWGCAYRSLQTIISWFRLQHY SV VPSHREIQQ LV+IG
Sbjct: 445 SIIQGSYEYYHYLQDSFDDSGWGCAYRSLQTIISWFRLQHYTSVAVPSHREIQQTLVEIG 504

Query: 231 DKDPSFVGSREWIGAIELSFVLDKLLGVSCKVLNVRSGAELPEKCRELALHFESQGTPIM 290
           DKDPSF+GSREWIGAIELSFVLDKLLGVSCK++N RSG+ELPEKCRELA+HFE+QGTPIM
Sbjct: 505 DKDPSFIGSREWIGAIELSFVLDKLLGVSCKIMNFRSGSELPEKCRELAMHFENQGTPIM 564

Query: 291 IGGGVLAYTLLGVDYNEASGDCAFLILDPHYTGNDEHKKIVNGGWCGWKKAVDSKGKNFF 350
           IGGGVLAYTLLGVDY+E SGDCAFLILDPHYTG+++HKKIVNGGWCGWKKAVDSKGK+FF
Sbjct: 565 IGGGVLAYTLLGVDYDEGSGDCAFLILDPHYTGSEDHKKIVNGGWCGWKKAVDSKGKSFF 624

Query: 351 LHDKFYNLLLPQRPSMV 367
           LH+KFYNLLLPQRP+MV
Sbjct: 625 LHNKFYNLLLPQRPNMV 641

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449469753|ref|XP_004152583.1| PREDICTED: probable Ufm1-specific protease-like [Cucumis sativus]

 Score =  481 bits (1237), Expect = e-133,   Method: Compositional matrix adjust.
 Identities = 253/393 (64%), Positives = 293/393 (74%), Gaps = 27/393 (6%)

Query: 2   CTLLFAKHICPCDLFC---GDKIQVSVLLNTSQKPTKSTAPIAEYYPALEDARLLVVDWK 58
           C    +K    C +F     D IQVSVLLN+S K  KS+AP+ EY+PA +  RLLVV+ K
Sbjct: 255 CANFCSKSKTECTMFSLQNADIIQVSVLLNSSAKSEKSSAPVVEYFPATDKTRLLVVNLK 314

Query: 59  LDVLCYATKRLPLIYALSKLVVPGLVDQLNTMKKAIMPYLLTQHPQLRPFHFSPPGVLQP 118
            +VLCYA K LPL  A+S L++PGLVDQLN MK AI+P L  Q PQL P+HF PPG L P
Sbjct: 315 TEVLCYAAKFLPLTCAVSMLIIPGLVDQLNLMKNAILPSLSKQLPQLVPYHFCPPGFLHP 374

Query: 119 ITVIYELSYGETEMKQADLTT---------FSRCVSNLRSL-----RCQLIVEALSCI-- 162
           ITV+YEL+YGETEMKQ +L           F R V  + S      R + + +  S +  
Sbjct: 375 ITVLYELTYGETEMKQVELRKALHLRLGLPFDRPVLRIASALDFSGRKENLPQKGSFLLK 434

Query: 163 -VHLAL----VKHKNLKIMSA---LSWMLKWSTFSLGWGCAYRSLQTIISWFRLQHYASV 214
            VH+ +    V   ++ ++         L+      GWGCAYRSLQTIISWFRLQHY S+
Sbjct: 435 DVHIGIPSSGVSGGHMSLVQGSYVYHHYLQEGFNDSGWGCAYRSLQTIISWFRLQHYTSI 494

Query: 215 DVPSHREIQQALVDIGDKDPSFVGSREWIGAIELSFVLDKLLGVSCKVLNVRSGAELPEK 274
           DVPSHR+IQ+ALV+IGDKD SF+GSREWIGAIELSFVLDKLLGVSCK++NVRSGAELPEK
Sbjct: 495 DVPSHRQIQEALVEIGDKDDSFIGSREWIGAIELSFVLDKLLGVSCKIINVRSGAELPEK 554

Query: 275 CRELALHFESQGTPIMIGGGVLAYTLLGVDYNEASGDCAFLILDPHYTGNDEHKKIVNGG 334
           CRELA HFE+QGTPIMIGGGVLAYTLLGVDYNEASGDC FLILDPHYTG+DE KKIV+GG
Sbjct: 555 CRELAAHFENQGTPIMIGGGVLAYTLLGVDYNEASGDCGFLILDPHYTGSDEVKKIVSGG 614

Query: 335 WCGWKKAVDSKGKNFFLHDKFYNLLLPQRPSMV 367
           WCGWKKAVDSKGKNFFLHDKFYNLLLPQRP+MV
Sbjct: 615 WCGWKKAVDSKGKNFFLHDKFYNLLLPQRPNMV 647

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449525257|ref|XP_004169634.1| PREDICTED: LOW QUALITY PROTEIN: probable Ufm1-specific protease-like [Cucumis sativus]

 Score =  481 bits (1237), Expect = e-133,   Method: Compositional matrix adjust.
 Identities = 255/393 (64%), Positives = 293/393 (74%), Gaps = 27/393 (6%)

Query: 2   CTLLFAKHICPCDLFC---GDKIQVSVLLNTSQKPTKSTAPIAEYYPALEDARLLVVDWK 58
           C    +K    C +F     D IQVSVLLN+S K  KS+AP+ EY+PA +  RLLVV+ K
Sbjct: 248 CANFCSKSKTECTMFSLQNADIIQVSVLLNSSAKSEKSSAPVVEYFPATDKTRLLVVNLK 307

Query: 59  LDVLCYATKRLPLIYALSKLVVPGLVDQLNTMKKAIMPYLLTQHPQLRPFHFSPPGVLQP 118
            +VLCYA K LPL  A+S L++PGLVDQLN MK AI+P L  Q PQL P+HF PPG L P
Sbjct: 308 TEVLCYAAKFLPLTCAVSMLIIPGLVDQLNLMKNAILPSLSKQLPQLVPYHFCPPGFLHP 367

Query: 119 ITVIYELSYGETEMKQADLTT---------FSRCVSNLRSL-----RCQLIVEALSCI-- 162
           ITV+YEL+YGETEMKQ +L           F R V  + S      R + + +  S +  
Sbjct: 368 ITVLYELTYGETEMKQVELRKALHLRLGLPFDRPVLRIASALDFSGRKENLPQKGSFLLK 427

Query: 163 -VHLALVK------HKNLKIMSALSWMLKWSTFS-LGWGCAYRSLQTIISWFRLQHYASV 214
            VH+ +        H +L   S +        F+  GWGCAYRSLQTIISWFRLQHY S+
Sbjct: 428 DVHIGIPSSGVSGGHMSLVQGSYVYHHYLQEGFNDSGWGCAYRSLQTIISWFRLQHYTSI 487

Query: 215 DVPSHREIQQALVDIGDKDPSFVGSREWIGAIELSFVLDKLLGVSCKVLNVRSGAELPEK 274
           DVPSHR+IQ+ALV+IGDKD SF+GSREWIGAIELSFVLDKLLGVSCK++NVRSGAELPEK
Sbjct: 488 DVPSHRQIQEALVEIGDKDDSFIGSREWIGAIELSFVLDKLLGVSCKIINVRSGAELPEK 547

Query: 275 CRELALHFESQGTPIMIGGGVLAYTLLGVDYNEASGDCAFLILDPHYTGNDEHKKIVNGG 334
           CRELA HFE+QGTPIMIGGGVLAYTLLGVDYNEASGDC FLILDPHYTG+DE KKIV+GG
Sbjct: 548 CRELAAHFENQGTPIMIGGGVLAYTLLGVDYNEASGDCGFLILDPHYTGSDEVKKIVSGG 607

Query: 335 WCGWKKAVDSKGKNFFLHDKFYNLLLPQRPSMV 367
           WCGWKKAVDSKGKNFFLHDKFYNLLLPQRP+MV
Sbjct: 608 WCGWKKAVDSKGKNFFLHDKFYNLLLPQRPNMV 640

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	367
UNIPROTKB|Q9NUQ7	469	UFSP2 "Ufm1-specific protease	0.465	0.364	0.587	1.1e-60
UNIPROTKB|Q5RCS9	469	UFSP2 "Ufm1-specific protease	0.465	0.364	0.587	1.1e-60
UNIPROTKB|E1BK69	469	UFSP2 "Uncharacterized protein	0.465	0.364	0.593	1.4e-60
RGD|1311161	461	Ufsp2 "UFM1-specific peptidase	0.460	0.366	0.588	2e-59
MGI|MGI:1913679	461	Ufsp2 "UFM1-specific peptidase	0.460	0.366	0.577	1.1e-58
UNIPROTKB|Q3B8N0	464	ufsp2 "Ufm1-specific protease	0.465	0.368	0.576	1.8e-58
ZFIN|ZDB-GENE-030131-8726	466	ufsp2 "ufm1-specific peptidase	0.465	0.366	0.587	6.1e-58
UNIPROTKB|F1NUY9	460	UFSP2 "Ufm1-specific protease	0.465	0.371	0.564	6.1e-58
UNIPROTKB|Q5ZIF3	460	UFSP2 "Ufm1-specific protease	0.465	0.371	0.559	7.8e-58
DICTYBASE|DDB_G0282953	650	DDB_G0282953 "unknown" [Dictyo	0.460	0.26	0.562	3.3e-55

UNIPROTKB|Q9NUQ7 UFSP2 "Ufm1-specific protease 2" [Homo sapiens (taxid:9606)]

 Score = 571 (206.1 bits), Expect = 1.1e-60, Sum P(2) = 1.1e-60
 Identities = 104/177 (58%), Positives = 136/177 (76%)

Query:   191 GWGCAYRSLQTIISWFRLQHYASVDVPSHREIQQALVDIGDKDPSFVGSREWIGAIELSF 250
             GWGCAYRSLQTI SWF+ Q Y    +P+HREIQQALVD GDK  +FVGSR+WIG+IE+  
Sbjct:   299 GWGCAYRSLQTICSWFKHQGYTERSIPTHREIQQALVDAGDKPATFVGSRQWIGSIEVQL 358

Query:   251 VLDKLLGVSCKVLNVRSGAELPEKCRELALHFESQGTPIMIGGGVLAYTLLGVDYNEASG 310
             VL++L+G++ K+L V  G+E+  + RELA HF+S+GTP+MIGGGVLA+T+LGV +NE +G
Sbjct:   359 VLNQLIGITSKILFVSQGSEIASQGRELANHFQSEGTPVMIGGGVLAHTILGVAWNEITG 418

Query:   311 DCAFLILDPHYTGNDEHKKIVNGGWCGWKKAVDSKGKNFFLHDKFYNLLLPQRPSMV 367
                FLILDPHYTG ++ + I+  GWCGWK      G +F+  D +YNL LPQRP+M+
Sbjct:   419 QIKFLILDPHYTGAEDLQVILEKGWCGWK------GPDFWNKDAYYNLCLPQRPNMI 469

GO:0006508 "proteolysis" evidence=IEA

GO:0016790 "thiolester hydrolase activity" evidence=IEA

GO:0005634 "nucleus" evidence=ISS

GO:0005737 "cytoplasm" evidence=ISS

GO:0005783 "endoplasmic reticulum" evidence=ISS

GO:0019783 "small conjugating protein-specific protease activity" evidence=ISS

UNIPROTKB|Q5RCS9 UFSP2 "Ufm1-specific protease 2" [Pongo abelii (taxid:9601)]

 Score = 571 (206.1 bits), Expect = 1.1e-60, Sum P(2) = 1.1e-60
 Identities = 104/177 (58%), Positives = 136/177 (76%)

Query:   191 GWGCAYRSLQTIISWFRLQHYASVDVPSHREIQQALVDIGDKDPSFVGSREWIGAIELSF 250
             GWGCAYRSLQTI SWF+ Q Y    +P+HREIQQALVD GDK  +FVGSR+WIG+IE+  
Sbjct:   299 GWGCAYRSLQTICSWFKHQGYTERSIPTHREIQQALVDAGDKPATFVGSRQWIGSIEVQL 358

Query:   251 VLDKLLGVSCKVLNVRSGAELPEKCRELALHFESQGTPIMIGGGVLAYTLLGVDYNEASG 310
             VL++L+G++ K+L V  G+E+  + RELA HF+S+GTP+MIGGGVLA+T+LGV +NE +G
Sbjct:   359 VLNQLIGITSKILFVSQGSEIASQGRELANHFQSEGTPVMIGGGVLAHTILGVAWNEITG 418

Query:   311 DCAFLILDPHYTGNDEHKKIVNGGWCGWKKAVDSKGKNFFLHDKFYNLLLPQRPSMV 367
                FLILDPHYTG ++ + I+  GWCGWK      G +F+  D +YNL LPQRP+M+
Sbjct:   419 QIKFLILDPHYTGAEDLQVILEKGWCGWK------GPDFWNKDAYYNLCLPQRPNMI 469

GO:0005634 "nucleus" evidence=ISS

GO:0005737 "cytoplasm" evidence=ISS

GO:0005783 "endoplasmic reticulum" evidence=ISS

GO:0019783 "small conjugating protein-specific protease activity" evidence=ISS

UNIPROTKB|E1BK69 UFSP2 "Uncharacterized protein" [Bos taurus (taxid:9913)]

 Score = 564 (203.6 bits), Expect = 1.4e-60, Sum P(2) = 1.4e-60
 Identities = 105/177 (59%), Positives = 133/177 (75%)

Query:   191 GWGCAYRSLQTIISWFRLQHYASVDVPSHREIQQALVDIGDKDPSFVGSREWIGAIELSF 250
             GWGCAYRSLQTI SWF+ Q Y    +P+HREIQQALVD GDK  +FVGSR+WIG+IE+  
Sbjct:   299 GWGCAYRSLQTICSWFKHQGYTERSIPTHREIQQALVDAGDKPATFVGSRQWIGSIEVQL 358

Query:   251 VLDKLLGVSCKVLNVRSGAELPEKCRELALHFESQGTPIMIGGGVLAYTLLGVDYNEASG 310
             VL+ L+GV+ K+L V  G+E+  + RELA HF+S+GTPIMIGGGVLA+T+LGV +NE +G
Sbjct:   359 VLNHLIGVTSKILFVSQGSEMASQGRELANHFQSEGTPIMIGGGVLAHTILGVAWNEITG 418

Query:   311 DCAFLILDPHYTGNDEHKKIVNGGWCGWKKAVDSKGKNFFLHDKFYNLLLPQRPSMV 367
                FLILDPHYTG ++ + I+  GWCGWK      G  F+  D +YNL LPQRP+ +
Sbjct:   419 QIKFLILDPHYTGAEDLQVILEKGWCGWK------GPEFWNKDAYYNLCLPQRPNTI 469

GO:0019783 "small conjugating protein-specific protease activity" evidence=IEA

GO:0016790 "thiolester hydrolase activity" evidence=IEA

GO:0005783 "endoplasmic reticulum" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

RGD|1311161 Ufsp2 "UFM1-specific peptidase 2" [Rattus norvegicus (taxid:10116)]

 Score = 559 (201.8 bits), Expect = 2.0e-59, Sum P(2) = 2.0e-59
 Identities = 103/175 (58%), Positives = 133/175 (76%)

Query:   191 GWGCAYRSLQTIISWFRLQHYASVDVPSHREIQQALVDIGDKDPSFVGSREWIGAIELSF 250
             GWGCAYRSLQT+ SWFR Q Y    +P+HREIQQALVD GDK  +FVGSR+WIG+IE+  
Sbjct:   291 GWGCAYRSLQTVCSWFRHQGYTERAIPTHREIQQALVDAGDKPATFVGSRQWIGSIEVQL 350

Query:   251 VLDKLLGVSCKVLNVRSGAELPEKCRELALHFESQGTPIMIGGGVLAYTLLGVDYNEASG 310
             VL++L+GV+ K+L V  G+E+  + RELA HF++ GTP+MIGGGVLA+T+LGV +NE +G
Sbjct:   351 VLNQLIGVTSKILFVNQGSEMASQGRELANHFQNVGTPVMIGGGVLAHTILGVAWNETTG 410

Query:   311 DCAFLILDPHYTGNDEHKKIVNGGWCGWKKAVDSKGKNFFLHDKFYNLLLPQRPS 365
                FLILDPHYTG ++ + I+  GWCGWK      G +F+  D +YNL LPQRP+
Sbjct:   411 QIKFLILDPHYTGAEDLQVILEKGWCGWK------GPDFWNKDAYYNLCLPQRPN 459

GO:0005634 "nucleus" evidence=ISO;ISS

GO:0005737 "cytoplasm" evidence=ISO;ISS

GO:0005783 "endoplasmic reticulum" evidence=ISO;ISS

GO:0006508 "proteolysis" evidence=IEA

GO:0008152 "metabolic process" evidence=ISO

GO:0016790 "thiolester hydrolase activity" evidence=IEA;ISO

GO:0019783 "small conjugating protein-specific protease activity" evidence=ISO;ISS

MGI|MGI:1913679 Ufsp2 "UFM1-specific peptidase 2" [Mus musculus (taxid:10090)]

 Score = 552 (199.4 bits), Expect = 1.1e-58, Sum P(2) = 1.1e-58
 Identities = 101/175 (57%), Positives = 132/175 (75%)

Query:   191 GWGCAYRSLQTIISWFRLQHYASVDVPSHREIQQALVDIGDKDPSFVGSREWIGAIELSF 250
             GWGCAYRSLQTI SWFR Q Y    +P+HREIQQALVD GDK  +FVGSR+WIG+IE+  
Sbjct:   291 GWGCAYRSLQTICSWFRHQGYTERSIPTHREIQQALVDAGDKPATFVGSRQWIGSIEVQM 350

Query:   251 VLDKLLGVSCKVLNVRSGAELPEKCRELALHFESQGTPIMIGGGVLAYTLLGVDYNEASG 310
             VL++L+GV+ K+L V  G+E+  + RELA HF++ GTP+M+GGGVLA+T+LGV +NE +G
Sbjct:   351 VLNQLIGVTSKILFVNQGSEMASQGRELANHFQNVGTPVMVGGGVLAHTILGVAWNETTG 410

Query:   311 DCAFLILDPHYTGNDEHKKIVNGGWCGWKKAVDSKGKNFFLHDKFYNLLLPQRPS 365
                FLILDPHYTG ++ + ++  GWCGWK        +F+  D +YNL LPQRP+
Sbjct:   411 QIKFLILDPHYTGAEDLQVMLEKGWCGWKSP------DFWNKDAYYNLCLPQRPN 459

GO:0005634 "nucleus" evidence=IDA

GO:0005737 "cytoplasm" evidence=IDA

GO:0005783 "endoplasmic reticulum" evidence=IDA

GO:0006508 "proteolysis" evidence=IEA

GO:0008152 "metabolic process" evidence=IDA

GO:0008233 "peptidase activity" evidence=IEA

GO:0008234 "cysteine-type peptidase activity" evidence=IEA

GO:0016787 "hydrolase activity" evidence=IEA

GO:0016790 "thiolester hydrolase activity" evidence=IDA

GO:0019783 "small conjugating protein-specific protease activity" evidence=IDA

UNIPROTKB|Q3B8N0 ufsp2 "Ufm1-specific protease 2" [Xenopus laevis (taxid:8355)]

 Score = 554 (200.1 bits), Expect = 1.8e-58, Sum P(2) = 1.8e-58
 Identities = 102/177 (57%), Positives = 129/177 (72%)

Query:   191 GWGCAYRSLQTIISWFRLQHYASVDVPSHREIQQALVDIGDKDPSFVGSREWIGAIELSF 250
             GWGCAYRSLQTI SWF+ Q Y    +P+H+EIQQALVD+GDK  SFVGSR+WIG+IE+  
Sbjct:   294 GWGCAYRSLQTICSWFKYQGYTDKPIPTHKEIQQALVDVGDKPASFVGSRQWIGSIEVQL 353

Query:   251 VLDKLLGVSCKVLNVRSGAELPEKCRELALHFESQGTPIMIGGGVLAYTLLGVDYNEASG 310
             VLD LLG++ K++ V  G EL  + REL  HF S+GTP+MIGGGVLA+T+LGV ++E +G
Sbjct:   354 VLDHLLGITSKIMFVSQGTELASRGRELVHHFTSEGTPVMIGGGVLAHTILGVAWSELTG 413

Query:   311 DCAFLILDPHYTGNDEHKKIVNGGWCGWKKAVDSKGKNFFLHDKFYNLLLPQRPSMV 367
             D  FLILDPHY G ++   I+  GWCGWK      G  F+    +YNL LPQRP+ +
Sbjct:   414 DIRFLILDPHYKGGEDLHVILEKGWCGWK------GPEFWDATAYYNLCLPQRPTAI 464

GO:0005634 "nucleus" evidence=ISS

GO:0005737 "cytoplasm" evidence=ISS

GO:0005783 "endoplasmic reticulum" evidence=ISS

GO:0019783 "small conjugating protein-specific protease activity" evidence=ISS

ZFIN|ZDB-GENE-030131-8726 ufsp2 "ufm1-specific peptidase 2" [Danio rerio (taxid:7955)]

 Score = 561 (202.5 bits), Expect = 6.1e-58, Sum P(2) = 6.1e-58
 Identities = 104/177 (58%), Positives = 134/177 (75%)

Query:   191 GWGCAYRSLQTIISWFRLQHYASVDVPSHREIQQALVDIGDKDPSFVGSREWIGAIELSF 250
             GWGCAYRSLQTI SWF+ Q Y    VP+H +IQQALVD+GDK+P FVGSR+WIG+IE+  
Sbjct:   296 GWGCAYRSLQTICSWFQQQGYVETAVPTHTQIQQALVDVGDKEPRFVGSRQWIGSIEVQA 355

Query:   251 VLDKLLGVSCKVLNVRSGAELPEKCRELALHFESQGTPIMIGGGVLAYTLLGVDYNEASG 310
             VL++LLGV+ K++ V  G+EL  K RELA HF ++GTP+MIGGGVLA+T+LGV ++E +G
Sbjct:   356 VLNQLLGVTSKIMFVSQGSELATKGRELANHFHTEGTPVMIGGGVLAHTILGVAWSENTG 415

Query:   311 DCAFLILDPHYTGNDEHKKIVNGGWCGWKKAVDSKGKNFFLHDKFYNLLLPQRPSMV 367
             +  FLILDPHYTG ++ + I + GWCGWK      G  F+  + +YNL LPQRP  V
Sbjct:   416 EIRFLILDPHYTGGEDLQIITDKGWCGWK------GPEFWDQNAYYNLCLPQRPKTV 466

GO:0005737 "cytoplasm" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=IEA;ISS

GO:0005783 "endoplasmic reticulum" evidence=IEA;ISS

GO:0019783 "small conjugating protein-specific protease activity" evidence=ISS

GO:0008233 "peptidase activity" evidence=IEA

GO:0016787 "hydrolase activity" evidence=IEA

GO:0008234 "cysteine-type peptidase activity" evidence=IEA

GO:0006508 "proteolysis" evidence=IEA

UNIPROTKB|F1NUY9 UFSP2 "Ufm1-specific protease 2" [Gallus gallus (taxid:9031)]

 Score = 550 (198.7 bits), Expect = 6.1e-58, Sum P(2) = 6.1e-58
 Identities = 100/177 (56%), Positives = 132/177 (74%)

Query:   191 GWGCAYRSLQTIISWFRLQHYASVDVPSHREIQQALVDIGDKDPSFVGSREWIGAIELSF 250
             GWGCAYRSLQTI SWF+ Q Y    +P+H+EIQQALVD GDK  +FVGSR+WIG+IE+  
Sbjct:   290 GWGCAYRSLQTICSWFKQQGYVDAPIPTHKEIQQALVDAGDKPAAFVGSRQWIGSIEVQL 349

Query:   251 VLDKLLGVSCKVLNVRSGAELPEKCRELALHFESQGTPIMIGGGVLAYTLLGVDYNEASG 310
             VL++L G++ K+L V  G+EL  + RELA HF+++GTP+MIGGGVLA+T+LGV +NE +G
Sbjct:   350 VLNQLFGITSKILFVSQGSELALQGRELANHFKTEGTPVMIGGGVLAHTILGVAWNEMTG 409

Query:   311 DCAFLILDPHYTGNDEHKKIVNGGWCGWKKAVDSKGKNFFLHDKFYNLLLPQRPSMV 367
                +LILDPHYTG ++   I++ GWC WK      G +F+  D +YNL LPQRP  +
Sbjct:   410 QIKYLILDPHYTGGEDLHVILDKGWCAWK------GPDFWSKDAYYNLCLPQRPKTI 460

GO:0005634 "nucleus" evidence=IEA

GO:0005783 "endoplasmic reticulum" evidence=IEA

GO:0016790 "thiolester hydrolase activity" evidence=IEA

GO:0019783 "small conjugating protein-specific protease activity" evidence=IEA

UNIPROTKB|Q5ZIF3 UFSP2 "Ufm1-specific protease 2" [Gallus gallus (taxid:9031)]

 Score = 549 (198.3 bits), Expect = 7.8e-58, Sum P(2) = 7.8e-58
 Identities = 99/177 (55%), Positives = 132/177 (74%)

Query:   191 GWGCAYRSLQTIISWFRLQHYASVDVPSHREIQQALVDIGDKDPSFVGSREWIGAIELSF 250
             GWGCAYRSLQTI SWF+ Q Y    +P+H+EIQQALVD GDK  +FVGSR+WIG++E+  
Sbjct:   290 GWGCAYRSLQTICSWFKQQGYVDAPIPTHKEIQQALVDAGDKPAAFVGSRQWIGSVEVQL 349

Query:   251 VLDKLLGVSCKVLNVRSGAELPEKCRELALHFESQGTPIMIGGGVLAYTLLGVDYNEASG 310
             VL++L G++ K+L V  G+EL  + RELA HF+++GTP+MIGGGVLA+T+LGV +NE +G
Sbjct:   350 VLNQLFGITSKILFVSQGSELALQGRELANHFKTEGTPVMIGGGVLAHTILGVAWNEMTG 409

Query:   311 DCAFLILDPHYTGNDEHKKIVNGGWCGWKKAVDSKGKNFFLHDKFYNLLLPQRPSMV 367
                +LILDPHYTG ++   I++ GWC WK      G +F+  D +YNL LPQRP  +
Sbjct:   410 QIKYLILDPHYTGGEDLHVILDKGWCAWK------GPDFWSKDAYYNLCLPQRPKTI 460

GO:0006508 "proteolysis" evidence=IEA

GO:0019783 "small conjugating protein-specific protease activity" evidence=ISS

GO:0005634 "nucleus" evidence=ISS

GO:0005737 "cytoplasm" evidence=ISS

GO:0005783 "endoplasmic reticulum" evidence=ISS

DICTYBASE|DDB_G0282953 DDB_G0282953 "unknown" [Dictyostelium discoideum (taxid:44689)]

 Score = 540 (195.1 bits), Expect = 3.3e-55, Sum P(2) = 3.3e-55
 Identities = 99/176 (56%), Positives = 129/176 (73%)

Query:   191 GWGCAYRSLQTIISWFRLQHYASVDVPSHREIQQALVDIGDKDPSFVGSREWIGAIELSF 250
             GWGCAYRS+QTI SW R Q   +  VP+H EIQ+ LVDI DK+PSF+ S++WIGA E++ 
Sbjct:   479 GWGCAYRSMQTICSWLRYQGLTNNSVPNHYEIQKTLVDIQDKEPSFLKSKQWIGAFEITL 538

Query:   251 VLDKLLGVSCKVLNVRSGAELPEKCRELALHFESQGTPIMIGGGVLAYTLLGVDYNEASG 310
              LD L G+  K+LN+ +G+++  K RE+A HF+S G+PIMIGGGVLAYTLLG+D+NE++G
Sbjct:   539 CLDHLFGIESKILNITTGSDIIYKSREIAKHFQSNGSPIMIGGGVLAYTLLGIDFNESTG 598

Query:   311 DCAFLILDPHYTG-NDEHKKIVNGGWCGWKKAVDSKGKNFFLHDKFYNLLLPQRPS 365
             +  +LILDPHYTG  D  K I + GWCGWK      G + F  D FYNL +PQ P+
Sbjct:   599 ETRYLILDPHYTGATDNIKLIKDKGWCGWK------GPDLFRKDAFYNLCMPQIPN 648

GO:0008150 "biological_process" evidence=ND

GO:0005575 "cellular_component" evidence=ND

GO:0003674 "molecular_function" evidence=ND

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: GSVIVG00015915001 SubName- Full=Chromosome chr17 scaffold_12, whole genome shotgun sequence; (647 aa) (Vitis vinifera)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	367
pfam07910	199	pfam07910, Peptidase_C78, Peptidase family C78	1e-72

>gnl|CDD|219635 pfam07910, Peptidase_C78, Peptidase family C78

 Score =  224 bits (573), Expect = 1e-72
 Identities = 82/182 (45%), Positives = 104/182 (57%), Gaps = 19/182 (10%)

Query: 191 GWGCAYRSLQTIISWFRLQH-------YASVDVPSHREIQQALVDIGDK--DPSFVGSRE 241
           GWGC YR+LQ ++SW  L         Y S  VP+  EIQQ L D  DK  D  FVGSR+
Sbjct: 24  GWGCGYRNLQMLLSWLLLNDAPGHEQGYTSKPVPTIPEIQQMLEDAWDKGFDAGFVGSRK 83

Query: 242 WIGAIELSFVLDKLLGVSCKVLNVRSGAEL---PEKCRELALHFESQ-GTPIMIGGGVLA 297
           WIG  E   VL  LLGV CK+++  SG+EL   PE  RE+A +FES+ G PI +     +
Sbjct: 84  WIGTTEAQAVLTSLLGVPCKIVDFSSGSELETHPELFREVARYFESERGPPIYLQHQGHS 143

Query: 298 YTLLGVDYNEASGDCAFLILDPHYTGNDEHKKIVNGGWCGWKKAVDSKGKNFFLHDKFYN 357
            T+LGV+ N A+G+   LILDPHYTG  + K + + GW  W+K        F     FYN
Sbjct: 144 RTILGVEIN-ATGEVNLLILDPHYTGAADLKLVGDKGWVSWRKGAS-----FLSKYSFYN 197

Query: 358 LL 359
           L 
Sbjct: 198 LC 199

This family formerly known as DUF1671 has been shown to be a cysteine peptidase called (Ufm1)-specific protease. Length = 199

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	367
KOG2433	577	consensus Uncharacterized conserved protein [Funct	100.0
PF07910	218	Peptidase_C78: Peptidase family C78; InterPro: IPR	100.0
KOG4696	393	consensus Uncharacterized conserved protein [Funct	99.97
KOG4696	393	consensus Uncharacterized conserved protein [Funct	98.32
PF03416	278	Peptidase_C54: Peptidase family C54 This family be	98.0
PF13529	144	Peptidase_C39_2: Peptidase_C39 like family; PDB: 3	96.05
KOG2674	409	consensus Cysteine protease required for autophagy	95.66
cd02549	141	Peptidase_C39A A sub-family of peptidase family C3	91.46
PF03412	131	Peptidase_C39: Peptidase C39 family This is family	86.5

>KOG2433 consensus Uncharacterized conserved protein [Function unknown]

Probab=100.00  E-value=1.4e-91  Score=694.01  Aligned_cols=331  Identities=41%  Similarity=0.694  Sum_probs=295.9

Q ss_pred             cceeEEEEEeecCCCCCC--CCCCeeeeecCcccceeEEEeeeeeE-EEEecccCcHHHHHHHhhHHHHHHHHHH-HHHH
Q 017729           18 GDKIQVSVLLNTSQKPTK--STAPIAEYYPALEDARLLVVDWKLDV-LCYATKRLPLIYALSKLVVPGLVDQLNT-MKKA   93 (367)
Q Consensus        18 ~~~~~~~~~~~~~~~~~~--~~~p~~~y~~~~~~~~~~~~~~~ld~-l~~~~~~~~~~~~~~~l~~~~l~~ql~~-~~~~   93 (367)
                      -|+|.+.++...|..++.  +-.|+++--..-+...-+++  ++|+ .-.+..+-.++  +-++++++++++|+. |.++
T Consensus       214 ~~vi~id~M~s~srd~ts~~~~~P~v~v~~~n~h~~r~~~--p~evv~~~~~~~t~l~--lyk~l~eai~r~l~~~m~~~  289 (577)
T KOG2433|consen  214 KDVIEIDAMQSLSRDTTSDQKLVPTVKVTKDNKHFTRLVT--PGEVVFPAFFGDTSLD--LYKRLREAINRRLNNTMMVT  289 (577)
T ss_pred             hheeeeHHHHhhccCCcCCCCCCceEEEeeCCceeEEEee--ehheeEeeccccchhH--HHHHHHHHHHHHhhHHHHHH
Confidence            589999999888876653  34477775444333333334  4554 44556666676  569999999999987 9999


Q ss_pred             hhchhhhc-CCCccceeecCCCCCCCeEEEecCCCCcchhhhhhhcccccchhhhhhhhhhc--------ccccccccc-
Q 017729           94 IMPYLLTQ-HPQLRPFHFSPPGVLQPITVIYELSYGETEMKQADLTTFSRCVSNLRSLRCQL--------IVEALSCIV-  163 (367)
Q Consensus        94 ~~~~~~~~-~~~~~~~hf~p~~~~~~~t~~y~~~~~~~~~~~~~~r~~~~~~~~lh~~~l~l--------~~n~~~~~~-  163 (367)
                      |...+.+. ...+.++||+|||+.|+|++.||++.+|++  +..+|+      +|| +.|.|        |+|++.|.+ 
T Consensus       290 I~~~~~G~gv~vp~s~hflppg~~~lv~~~yp~g~~D~~--~~~yRk------rLH-~lFnLP~srPyfrrsna~~f~~E  360 (577)
T KOG2433|consen  290 INGIRAGRGVTVPTSAHFLPPGWVSLVHLQYPTGWTDNE--QRNYRK------RLH-KLFNLPSSRPYFRRSNALAFHSE  360 (577)
T ss_pred             HHhhhcCCceeccCcceecCcCcceEEEEecCCCCCcHH--HHHHHH------HHH-HhhCCCCCchhhhhhhhhhcCCc
Confidence            98888764 447889999999999999999999999874  456899      899 67888        789999964 


Q ss_pred             ----cccccccccccc---------eeeeecC------CCCCCCCCCcccchhhHHHHHHHhhccCCCCCCCCChHHHHH
Q 017729          164 ----HLALVKHKNLKI---------MSALSWM------LKWSTFSLGWGCAYRSLQTIISWFRLQHYASVDVPSHREIQQ  224 (367)
Q Consensus       164 ----~~~lL~n~H~~l---------~~lv~G~------~qd~~~D~GWGCGYRnLQml~Sw~~~q~y~~~~vPSI~eIQq  224 (367)
                          ...++||+|.++         .++|+|.      |||+.+|+||||||||+|||||||.+|||++++||||+||||
T Consensus       361 ~~~~~~~~irnpH~~l~ps~~~~G~iy~VnG~Y~YhHYmQd~idD~GWGCAYRSlQTIcSWFilqGYT~~pIPtHrEiQq  440 (577)
T KOG2433|consen  361 SARLTKKLIRNPHLSLTPSYQPVGEIYTVNGPYNYHHYMQDGIDDSGWGCAYRSLQTICSWFILQGYTDKPIPTHREIQQ  440 (577)
T ss_pred             hhhcccccccCCccccCCCCCccceEEEecCcchhHHHHHhccccCCcchhhHhHHHHHHHHHHcCccCCCCCcHHHHHH
Confidence                467999999999         8999998      999999999999999999999999999999999999999999


Q ss_pred             HHHhcCCCCCCccccccccchhHHHHHHHHhhCCcEEEEEecCCCChhHHHHHHHHHhccCCCceEecCCcceeEEEEEE
Q 017729          225 ALVDIGDKDPSFVGSREWIGAIELSFVLDKLLGVSCKVLNVRSGAELPEKCRELALHFESQGTPIMIGGGVLAYTLLGVD  304 (367)
Q Consensus       225 ~Le~awDK~~~fvGSrkWIGT~Ev~~vL~~~lGI~ckIv~f~sg~e~~~l~~~l~~hF~~~gtPImigg~ghS~TIvGVe  304 (367)
                      +|+++.|||+.|||||+|||++|+++||+.+++++|||+++++|+|+.+..++|++||+++||||||||+++||||+||+
T Consensus       441 aLvdi~DKpA~FVGSrQWIGStEis~vLn~ll~~~skil~v~sGaEva~~~rELA~HFqt~GTPVMIGGgvLAHTIlGVd  520 (577)
T KOG2433|consen  441 ALVDIQDKPAKFVGSRQWIGSTEISFVLNELLKLESKILAVNSGAEVAERVRELARHFQTSGTPVMIGGGVLAHTILGVD  520 (577)
T ss_pred             HHHhccCcccceecccceecchhHHHHHHHHhccceEEEEeccccHHHHHHHHHHHHhhccCCcEEEccceeeeeEeeee
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             EeCCCCceEEEEeCCCCCCchhhhhhhcCCeEeEEecccCCCccccccCCeeeeccCCCCCCC
Q 017729          305 YNEASGDCAFLILDPHYTGNDEHKKIVNGGWCGWKKAVDSKGKNFFLHDKFYNLLLPQRPSMV  367 (367)
Q Consensus       305 ~~~~~G~~~LLIlDPhytg~~~lk~l~~kGw~gWKk~~~~~g~~~f~~~~fYNLClPq~p~~v  367 (367)
                      ++..+|+++||||||||||+||++.|++|||||||      |++||.|++||||||||||+++
T Consensus       521 ~n~~TGq~KFLILDPHYTGaeDl~tI~~KGWCgWK------g~dFW~Kd~yYNKOGPQrP~~i  577 (577)
T KOG2433|consen  521 FNDTTGQTKFLILDPHYTGAEDLKTITSKGWCGWK------GADFWSKDHYYNLCLPQRPDAI  577 (577)
T ss_pred             eecccCceEEEEeCCCcCChhhHHHHhhccccccc------CcccccccceeeeccCCCCCCC
Confidence            99999999999999999999999999999999999      7799999999999999999875

>PF07910 Peptidase_C78: Peptidase family C78; InterPro: IPR012462 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families

Probab=100.00  E-value=2.1e-63  Score=462.31  Aligned_cols=173  Identities=42%  Similarity=0.770  Sum_probs=128.6

Q ss_pred             CCCCCCCCCcccchhhHHHHHHHhhc-------cCCCCCCCCChHHHHHHHHhcCCC--CC-------Cccccccccchh
Q 017729          183 LKWSTFSLGWGCAYRSLQTIISWFRL-------QHYASVDVPSHREIQQALVDIGDK--DP-------SFVGSREWIGAI  246 (367)
Q Consensus       183 ~qd~~~D~GWGCGYRnLQml~Sw~~~-------q~y~~~~vPSI~eIQq~Le~awDK--~~-------~fvGSrkWIGT~  246 (367)
                      .| +++|+|||||||||||||||++.       +.+....||||++||++||+||||  +.       +|+||||||||+
T Consensus        15 ~~-~~~D~GWGCGYRniQml~S~l~~~~~~~~~~~~~~~~vPsi~~iQ~~le~awdkG~d~~G~~~~~~~~GsrkWIGt~   93 (218)
T PF07910_consen   15 SQ-GFDDEGWGCGYRNIQMLCSWLLHQDQPGYEQFFGGSRVPSIREIQQWLEEAWDKGFDPQGAQLTGGFVGSRKWIGTT   93 (218)
T ss_dssp             TT-T---TTT-HHHHHHHHHHCCCCC-------TTS--TT---HHHHHHHHHHCTSS---C-------CGTT------HH
T ss_pred             ee-cCCCCCccchhhHHHHHHHHHHhhhccccccccCCCCCCCHHHHHHHHHHHHhhcCCcccccccccccccccEEcHH
Confidence            45 99999999999999999999988       345557999999999999999999  66       999999999999


Q ss_pred             HHHHHHHHhhCCcEEEEEec-CCCCh---hHHHHHHHHHhccC-C----------CceEecCCcceeEEEEEEEeCCCCc
Q 017729          247 ELSFVLDKLLGVSCKVLNVR-SGAEL---PEKCRELALHFESQ-G----------TPIMIGGGVLAYTLLGVDYNEASGD  311 (367)
Q Consensus       247 Ev~~vL~~~lGI~ckIv~f~-sg~e~---~~l~~~l~~hF~~~-g----------tPImigg~ghS~TIvGVe~~~~~G~  311 (367)
                      |++++|+++ ||+|+|++|+ ++++.   +.+++||++||++. +          +||||||+|||+||||||.+ .+|+
T Consensus        94 E~~~~l~~~-gi~~~i~~f~~~~~~~~~~~~l~~~v~~yF~~~~~~~~~~~~t~~~Piylqh~ghS~TIvGie~~-~~g~  171 (218)
T PF07910_consen   94 EASALLRSL-GIPCKIVDFPKSGSEIRAHPRLLDWVWNYFESGCGSPSQSRQTNKPPIYLQHDGHSRTIVGIERN-KDGE  171 (218)
T ss_dssp             HHHHHHHHC--SEEEEEEES-SGCCC---CCGHHHHHHHHCCT--------------EEEEETTEEEEEEEEEE--TT--
T ss_pred             HHHHHHhhC-CceEEEEEEECCCcccccHHHHHHHHHHHhhcCCCccccccccCCCCeEeCccccceEEEEEEEC-CCCC
Confidence            999999985 9999999999 76654   89999999999987 7          89999999999999999998 6899


Q ss_pred             eEEEEeCCCCCCchhhhhhhcCCeEeEEecccCCCccccccCCeeeec
Q 017729          312 CAFLILDPHYTGNDEHKKIVNGGWCGWKKAVDSKGKNFFLHDKFYNLL  359 (367)
Q Consensus       312 ~~LLIlDPhytg~~~lk~l~~kGw~gWKk~~~~~g~~~f~~~~fYNLC  359 (367)
                      ++||||||||++++..+.|.++||++|.++.. ||.++|++.+|||||
T Consensus       172 ~~LLVlDP~~~~~~~~~~l~~~~~~~w~~~~r-r~~~~l~~~~~Ynl~  218 (218)
T PF07910_consen  172 VNLLVLDPHYTGSDIKKLLGEKGWVSWQKLYR-RGPSFLKKYSFYNLC  218 (218)
T ss_dssp             EEEEEE-TT--S-S-CHHHHHTTSEEE----E-EHCCCS-TTS-EEEE
T ss_pred             EEEEEECCCCCCHHHHHHHHhCCccccccccc-cChhhcccCCEeeeC
Confidence            99999999999998889999999999943322 377999999999998

Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Cysteine peptidases have characteristic molecular topologies, which can be seen not only in their three-dimensional structures, but commonly also in the two-dimensional structures. These are peptidases in which the nucleophile is the sulphydryl group of a cysteine residue. Cysteine proteases are divided into clans (proteins which are evolutionary related), and further sub-divided into families, on the basis of the architecture of their catalytic dyad or triad []. This entry contains UfSP1 and UfSP2, which are cysteine peptidases required for the processing and activation of Ubiquitin fold modifier 1 (Ufm1, IPR005375 from INTERPRO) and for its release from conjugated cellular proteins. UfSP1 and UfSP2 are 217 aa and 461 aa respectively [, ]. The peptidases belong to MEROPS peptidase family C78, clan CA. The UfSP2 family have an N-terminal extension with one or more zinc finger domains of the C2H2 type (IPR007087 from INTERPRO), which have been shown to be involved in protein:protein interaction. UfSP2 is present in most, if not all, multi-cellular organisms including plants, nematodes, flies, and mammals, whereas UfSP1 is not present in plants and nematodes []. ; PDB: 3OQC_B 2Z84_A.

>KOG4696 consensus Uncharacterized conserved protein [Function unknown]

Probab=99.97  E-value=3.8e-32  Score=262.83  Aligned_cols=192  Identities=20%  Similarity=0.262  Sum_probs=153.8

Q ss_pred             cccccccccccc-----------eeeeecC----CCCCCCCCCcccchhhHHHHHHHhhccC-------CC-CCCCCChH
Q 017729          164 HLALVKHKNLKI-----------MSALSWM----LKWSTFSLGWGCAYRSLQTIISWFRLQH-------YA-SVDVPSHR  220 (367)
Q Consensus       164 ~~~lL~n~H~~l-----------~~lv~G~----~qd~~~D~GWGCGYRnLQml~Sw~~~q~-------y~-~~~vPSI~  220 (367)
                      ...+|+||.+.+           +++++|+    ++..-.|+||||||||+||.|||++.++       +. ...||.|.
T Consensus        86 Ll~il~~Clq~l~~~~~~~lic~~sll~g~VD~hf~~~~~d~Gwgcgw~niqmq~shll~~~e~~krr~f~s~n~i~ei~  165 (393)
T KOG4696|consen   86 LLDILSKCLQQLKRQLQHFLICGCSLLDGDVDYHFTVTGIDRGWGCGWRNIQMQISHLLYTNENWKRRNFSSGNEIYEIN  165 (393)
T ss_pred             HHHHHHHHHHHHHhhhcccceeeehhccccchhheeecccccccCccccchHHHHHHHHhhChhhhhhccccCccccchH
Confidence            466788888877           8899998    8888899999999999999999986653       22 35799999


Q ss_pred             HHHHHHHhcCCCC----------CCccccccccchhHHHHHHHHhhC---------------------------------
Q 017729          221 EIQQALVDIGDKD----------PSFVGSREWIGAIELSFVLDKLLG---------------------------------  257 (367)
Q Consensus       221 eIQq~Le~awDK~----------~~fvGSrkWIGT~Ev~~vL~~~lG---------------------------------  257 (367)
                      .+|++||.||.|+          .+..|+|.|||++|...+|++ .|                                 
T Consensus       166 sLQr~le~awnkGFDi~~ALH~D~R~~G~K~W~~~~~~~qml~s-~gl~~~~~d~~P~K~qSM~l~~~~e~~~Pq~~SiG  244 (393)
T KOG4696|consen  166 SLQRLLESAWNKGFDIIEALHTDVRSLGDKGWGCGYRNFQMLDS-EGLAQLGDDLIPPKIQSMILHGKWEGFDPQGASIG  244 (393)
T ss_pred             HHHHHHHHHHhcccchhhhhcccchhcccccccccchhHHHHHH-HHHHhhccccCchhhhhhhhcccccccCccccccc
Confidence            9999999999997          578999999999999999987 34                                 


Q ss_pred             ------------CcEEEEEecCCC----ChhHHHHHHHHHhccC-----------CCceEecCCcceeEEEEEEEeCCCC
Q 017729          258 ------------VSCKVLNVRSGA----ELPEKCRELALHFESQ-----------GTPIMIGGGVLAYTLLGVDYNEASG  310 (367)
Q Consensus       258 ------------I~ckIv~f~sg~----e~~~l~~~l~~hF~~~-----------gtPImigg~ghS~TIvGVe~~~~~G  310 (367)
                                  +.|+++||...+    ..+.++.||++||++.           ++|+|+||+|||||||||+... .-
T Consensus       245 a~evY~l~tgl~vk~~~VDfh~s~~~~s~~~~Lfewv~nyfss~~e~S~~v~~tsk~P~YlQhqGHSrtiiG~~~~l-~~  323 (393)
T KOG4696|consen  245 ATEVYSLFTGLFVKVALVDFHFSSEPASASNALFEWVKNYFSSSGEGSPNVTSTSKSPCYLQHQGHSRTIIGFCSSL-ER  323 (393)
T ss_pred             ceeEEEEeecceeeEEEEeccccCCccccchHHHHHHHHHhccccCCCCCceecCCCCeEEEecCceeEEEEeeecc-cc
Confidence                        456777775432    3579999999999864           5799999999999999999985 46


Q ss_pred             ceEEEEeCCCCCCchhhhhhhcCCeEeEEecccCCCccccccCCeeeeccC
Q 017729          311 DCAFLILDPHYTGNDEHKKIVNGGWCGWKKAVDSKGKNFFLHDKFYNLLLP  361 (367)
Q Consensus       311 ~~~LLIlDPhytg~~~lk~l~~kGw~gWKk~~~~~g~~~f~~~~fYNLClP  361 (367)
                      ..+||||||.-...+--|+++++  .+|-+... ||+..+ |-+.|++..-
T Consensus       324 t~~LlILDP~d~~r~vqk~l~~~--a~~~~~l~-r~~~~L-K~~qyQ~l~v  370 (393)
T KOG4696|consen  324 TLTLLILDPGDRYRSVQKKLVNI--ADFNHCLM-RKKRSL-KFSQYQLLHV  370 (393)
T ss_pred             ceeEEEeCCCCchHHHHHHHHHH--hhhHHHHH-hhccCc-CCcceEEEEe
Confidence            89999999987777766666554  33433322 355666 7788888653

>KOG4696 consensus Uncharacterized conserved protein [Function unknown]

Probab=98.32  E-value=1.5e-07  Score=92.89  Aligned_cols=61  Identities=30%  Similarity=0.317  Sum_probs=42.1

Q ss_pred             CCCCCCcccchhhHHHHHHHhhcc-CCCCCCCCChHHHHHHHHhcCCCCCCccccccccchhHHHHHH
Q 017729          186 STFSLGWGCAYRSLQTIISWFRLQ-HYASVDVPSHREIQQALVDIGDKDPSFVGSREWIGAIELSFVL  252 (367)
Q Consensus       186 ~~~D~GWGCGYRnLQml~Sw~~~q-~y~~~~vPSI~eIQq~Le~awDK~~~fvGSrkWIGT~Ev~~vL  252 (367)
                      ...|+||||||||.||+.|....+ +|.  .+|  ++||.+++.+|-.+-.-.|  +=||++|++.++
T Consensus       191 ~~G~K~W~~~~~~~qml~s~gl~~~~~d--~~P--~K~qSM~l~~~~e~~~Pq~--~SiGa~evY~l~  252 (393)
T KOG4696|consen  191 SLGDKGWGCGYRNFQMLDSEGLAQLGDD--LIP--PKIQSMILHGKWEGFDPQG--ASIGATEVYSLF  252 (393)
T ss_pred             hcccccccccchhHHHHHHHHHHhhccc--cCc--hhhhhhhhcccccccCccc--ccccceeEEEEe
Confidence            347999999999999999986544 443  677  8999999999843211111  116666665543

>PF03416 Peptidase_C54: Peptidase family C54 This family belongs to family C54 of the peptidase classification

Probab=98.00  E-value=2e-05  Score=76.29  Aligned_cols=132  Identities=24%  Similarity=0.398  Sum_probs=67.5

Q ss_pred             CCCCcccchhhHHHHHHH-hhcc----CCC-CCCCCChHHHHHHHHhcCCCCC-------------Cccc--cccccchh
Q 017729          188 FSLGWGCAYRSLQTIISW-FRLQ----HYA-SVDVPSHREIQQALVDIGDKDP-------------SFVG--SREWIGAI  246 (367)
Q Consensus       188 ~D~GWGCGYRnLQml~Sw-~~~q----~y~-~~~vPSI~eIQq~Le~awDK~~-------------~fvG--SrkWIGT~  246 (367)
                      -|.||||-.|+-|||+.- ++..    ++. ....+...+..++|.--.|++.             ...|  =.+|-|.+
T Consensus        32 SD~GWGCmlRs~QMlLAqaL~~~~lgr~~~~~~~~~~~~~~~~il~~F~D~~~apfSIh~i~~~g~~~~g~~~G~W~gPs  111 (278)
T PF03416_consen   32 SDCGWGCMLRSGQMLLAQALLRHHLGRDWRWPDNSDNNEEYRRILSLFQDSPSAPFSIHNIVQEGKSEFGKKPGEWFGPS  111 (278)
T ss_dssp             B-TTT-HHHHHHHHHHHHHHHHHHC-TT--TTTTSS--HHHHHHHHTTSSSTTSTTSHHHHHHHHHTT-T--TTS-B-HH
T ss_pred             cCCCcccccchhHHHHHHHHHHHhhcccccccccccCcHHHHHHHHhcCCCCCCcchHHHHHHHHHHHcCCCCcccCCHH
Confidence            599999999999999886 4332    222 1111444555555555555541             1112  35899999


Q ss_pred             HHHHHHHHhhCC----cEEEEEecCCCCh-------------------------------------hHHHHHHHHHhccC
Q 017729          247 ELSFVLDKLLGV----SCKVLNVRSGAEL-------------------------------------PEKCRELALHFESQ  285 (367)
Q Consensus       247 Ev~~vL~~~lGI----~ckIv~f~sg~e~-------------------------------------~~l~~~l~~hF~~~  285 (367)
                      .++.++..+..-    .-++.-..++.-.                                     +...+.|...|+-.
T Consensus       112 ~~~~~l~~l~~~~~~~~l~v~v~~d~~i~~~d~~~~~~~~~~~~~~~~~~~vLlliplrLGl~~in~~Y~~~l~~~l~~p  191 (278)
T PF03416_consen  112 TIAQALKKLVNEADLSGLRVYVSSDGTIYYDDVEELCSNSNPTKQSSWWKPVLLLIPLRLGLDKINPKYIPSLKSLLSLP  191 (278)
T ss_dssp             HHHHHHHHHHCC-TTT--EEEE-BTTEEEHHHHHHHHCCS-S-----CE--EEEEEEEE-SSSS--GGGHHHHHHHCCST
T ss_pred             HHHHHHHHHHHhccccCceEEEeeccccchhHHHHHHhhhccccccccCceEEEEEEeecCCCCCCHHHHHHHHHHhCCc
Confidence            999999987643    1222222222111                                     12233333333321


Q ss_pred             CCceEecC-CcceeEEEEEEEeCCCCceEEEEeCCCCCCch
Q 017729          286 GTPIMIGG-GVLAYTLLGVDYNEASGDCAFLILDPHYTGND  325 (367)
Q Consensus       286 gtPImigg-~ghS~TIvGVe~~~~~G~~~LLIlDPhytg~~  325 (367)
                      -+==|+|| ..+|+=++|+.-+      +|+-|||||+...
T Consensus       192 q~vGiiGG~p~~a~YfvG~~~d------~liYLDPH~~Q~a  226 (278)
T PF03416_consen  192 QSVGIIGGRPNSALYFVGFQGD------QLIYLDPHYVQPA  226 (278)
T ss_dssp             TEEEEEEEETTEEEEEEEEETT------EEEEE---SEEE-
T ss_pred             ccceeeccCCCceEEEEEEccC------eEEEECCCCCeeC
Confidence            11124555 6799999998754      4999999998654

; InterPro: IPR005078 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Cysteine peptidases have characteristic molecular topologies, which can be seen not only in their three-dimensional structures, but commonly also in the two-dimensional structures. These are peptidases in which the nucleophile is the sulphydryl group of a cysteine residue. Cysteine proteases are divided into clans (proteins which are evolutionary related), and further sub-divided into families, on the basis of the architecture of their catalytic dyad or triad []. This is a group of cysteine peptidases which constitute MEROPS peptidase family C54 (Aut2 peptidase family, clan CA), which are a group of proteins of unknown function.; PDB: 2CY7_A 2ZZP_A 2D1I_B 2Z0E_A 2Z0D_A 2P82_D.

>PF13529 Peptidase_C39_2: Peptidase_C39 like family; PDB: 3ERV_A

Probab=96.05  E-value=0.043  Score=44.72  Aligned_cols=111  Identities=21%  Similarity=0.403  Sum_probs=59.2

Q ss_pred             CCCcccchhhHHHHHHHhhccCCCCCCCCChHHHHHHHHhc--CCCCCCcccc-----ccccchhHHHHHHHHhhCCcEE
Q 017729          189 SLGWGCAYRSLQTIISWFRLQHYASVDVPSHREIQQALVDI--GDKDPSFVGS-----REWIGAIELSFVLDKLLGVSCK  261 (367)
Q Consensus       189 D~GWGCGYRnLQml~Sw~~~q~y~~~~vPSI~eIQq~Le~a--wDK~~~fvGS-----rkWIGT~Ev~~vL~~~lGI~ck  261 (367)
                      ....|||=-+++|+++++   +.    -++..+|-+.+...  +|....++|.     ...+...++...+.. +|....
T Consensus        11 ~~~~~Cg~as~~mvl~~~---g~----~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~   82 (144)
T PF13529_consen   11 ETSYGCGPASAAMVLNYY---GK----NISQEDLADEAGTNPDGDPNTGFVGNPYYDSGYGTSPDDLARYLEK-YGYKAT   82 (144)
T ss_dssp             T-TT-HHHHHHHHHHHHT---T--------HHHHHHHS-EE-E--TTTSEEB-SSTS-B----HHHHHHHHHH-H-TTEE
T ss_pred             CCCCcCHHHHHHHHHHHc---CC----CCCHHHHHHHhhhccCCCCCcccccCccccCCCccccHHHHHHHHH-cCccee
Confidence            356779999999999998   22    46777777777654  3555555532     334555566666776 565211


Q ss_pred             EEEecCCCChhHHHHHHHHHhccCCCceEecC----------------CcceeEEEEEEEeCCCCceEEEEeCCC
Q 017729          262 VLNVRSGAELPEKCRELALHFESQGTPIMIGG----------------GVLAYTLLGVDYNEASGDCAFLILDPH  320 (367)
Q Consensus       262 Iv~f~sg~e~~~l~~~l~~hF~~~gtPImigg----------------~ghS~TIvGVe~~~~~G~~~LLIlDPh  320 (367)
                        . ......    +.|.++.+ .|.||++..                ++|..+|+|++.+   +  .+.|.||.
T Consensus        83 --~-~~~~~~----~~i~~~i~-~G~Pvi~~~~~~~~~~~~~~~~~~~~~H~vvi~Gy~~~---~--~~~v~DP~  144 (144)
T PF13529_consen   83 --D-TSDASF----DDIKQEID-AGRPVIVSVNSGWRPPNGDGYDGTYGGHYVVIIGYDED---G--YVYVNDPW  144 (144)
T ss_dssp             --E--TTS-H----HHHHHHHH-TT--EEEEEETTSS--TTEEEEE-TTEEEEEEEEE-SS---E---EEEE-TT
T ss_pred             --e-ccCCcH----HHHHHHHH-CCCcEEEEEEcccccCCCCCcCCCcCCEEEEEEEEeCC---C--EEEEeCCC
Confidence              1 223344    44444444 377877655                6799999999874   2  89999994

>KOG2674 consensus Cysteine protease required for autophagy - Apg4p/Aut2p [Cytoskeleton; Intracellular trafficking, secretion, and vesicular transport]

Probab=95.66  E-value=0.09  Score=54.34  Aligned_cols=131  Identities=25%  Similarity=0.406  Sum_probs=78.5

Q ss_pred             CCCCcccchhhHHHHHHH-hhccC----CC-CCCCCChHHHHHHHHhcCCCCCCc--------------cccccccchhH
Q 017729          188 FSLGWGCAYRSLQTIISW-FRLQH----YA-SVDVPSHREIQQALVDIGDKDPSF--------------VGSREWIGAIE  247 (367)
Q Consensus       188 ~D~GWGCGYRnLQml~Sw-~~~q~----y~-~~~vPSI~eIQq~Le~awDK~~~f--------------vGSrkWIGT~E  247 (367)
                      -|.||||=-|+=||++.- +..++    ++ ...-+...+-+++|+.-.|.+.++              .-=-+|-|-..
T Consensus        92 tD~GWGCMlR~gQMllaqaL~~~~lGRdw~w~~~~~~~~~y~~il~~F~D~~~a~~SiHq~~~~G~~~~~~~g~WfGP~~  171 (409)
T KOG2674|consen   92 TDCGWGCMLRCGQMLLAQALICRHLGRDWRWTDEKRLEEEYLKILNLFEDEPDAPFSIHQIVQMGVGEGKAVGSWFGPNT  171 (409)
T ss_pred             cCcceeeEEehhHHHHHHHHHHhhcccccccccccccchHHHHHHHhhcCCCccccCHHHHHHHHhhccCCCccccCCcH
Confidence            599999999999999886 32222    22 222333333333555444543110              11247999999


Q ss_pred             HHHHHHHhhCCc------EEEEEe-------------cCC-------------------------------------CCh
Q 017729          248 LSFVLDKLLGVS------CKVLNV-------------RSG-------------------------------------AEL  271 (367)
Q Consensus       248 v~~vL~~~lGI~------ckIv~f-------------~sg-------------------------------------~e~  271 (367)
                      ++-++.+ ++..      ...+.+             ..+                                     +++
T Consensus       172 ~a~~~~~-L~~~~~~~~~~~~v~~~~~vv~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ewkpllLLVPvRLG~~~i  250 (409)
T KOG2674|consen  172 VAQVLKK-LARFDPWSSLAVYVAMDNAVIIRDIVEKCRRGPLPALTIEDATKQSLEFSNGITEWKPLLLLIPLRLGITSI  250 (409)
T ss_pred             HHHHHHH-hhccCCCCCccEEEecccceEEeeeehhcccCCcccceecccchhhcccCCCCCCCcceEEEEEeeeccccc
Confidence            9888876 4321      111110             001                                     011


Q ss_pred             -hHHHHHHHHHhccCCCceEecC-CcceeEEEEEEEeCCCCceEEEEeCCCCCCch
Q 017729          272 -PEKCRELALHFESQGTPIMIGG-GVLAYTLLGVDYNEASGDCAFLILDPHYTGND  325 (367)
Q Consensus       272 -~~l~~~l~~hF~~~gtPImigg-~ghS~TIvGVe~~~~~G~~~LLIlDPhytg~~  325 (367)
                       +..+..|.+-|+-.-+==++|| .+||+-++|+.-++      |+-|||||+-+.
T Consensus       251 Np~Yvp~lk~~f~~~q~lGI~GGkP~~S~YFvGyq~d~------l~YLDPH~~Q~~  300 (409)
T KOG2674|consen  251 NPSYVPALKECFEMPQSVGIIGGRPNHSLYFVGYQGDE------LFYLDPHYTQPA  300 (409)
T ss_pred             ChHHHHHHHHHhcchhhceeccCCCCcceEEEEEecce------EEEeCCccCccc
Confidence             3566777777764333335666 78999999998775      999999999874

>cd02549 Peptidase_C39A A sub-family of peptidase family C39

Probab=91.46  E-value=1.5  Score=36.42  Aligned_cols=101  Identities=18%  Similarity=0.241  Sum_probs=56.5

Q ss_pred             ccchhhHHHHHHHhhccCCCCCCCCChHHHHHHHHhcCCCCCCccccccccchhHHHHH-HHHhhCCcEEEEEecCCCCh
Q 017729          193 GCAYRSLQTIISWFRLQHYASVDVPSHREIQQALVDIGDKDPSFVGSREWIGAIELSFV-LDKLLGVSCKVLNVRSGAEL  271 (367)
Q Consensus       193 GCGYRnLQml~Sw~~~q~y~~~~vPSI~eIQq~Le~awDK~~~fvGSrkWIGT~Ev~~v-L~~~lGI~ckIv~f~sg~e~  271 (367)
                      +||=.++.|++.|+-.+-       +..++...   .+......  ++.-.-..++... ++. +|+.++.+....    
T Consensus         6 ~C~~~slamvl~~~g~~~-------~~~~l~~~---~~~~~~~~--~~~g~~~~~l~~~~a~~-~G~~~~~~~~~~----   68 (141)
T cd02549           6 GCGPTSLAMVLSYLGVKV-------TKPQLAAE---GNTYDFAK--DGYGTYPKPIVSAAARK-YGLVVRPLTGLL----   68 (141)
T ss_pred             ccHHHHHHHHHHhcCCCC-------CHHHHHhh---ccccccCC--CCCCcCHHHHHHHHHhh-CCCcEEECCCHH----
Confidence            699999999999974321       22333221   11111111  1111223344444 554 799888653211    


Q ss_pred             hHHHHHHHHHhccCCCceEec--------CCcceeEEEEEEEeCCCCceEEEEeCCCC
Q 017729          272 PEKCRELALHFESQGTPIMIG--------GGVLAYTLLGVDYNEASGDCAFLILDPHY  321 (367)
Q Consensus       272 ~~l~~~l~~hF~~~gtPImig--------g~ghS~TIvGVe~~~~~G~~~LLIlDPhy  321 (367)
                      .     +. ...+.+-|+++.        .++|...|.|++ ..  +  .++|.||..
T Consensus        69 ~-----~~-~~l~~~~Pvi~~~~~~~~~~~~gH~vVv~g~~-~~--~--~~~i~DP~~  115 (141)
T cd02549          69 A-----LL-RQLAAGHPVIVSVNLGVSITPSGHAMVVIGYD-RK--G--NVYVNDPGG  115 (141)
T ss_pred             H-----HH-HHHHCCCeEEEEEecCcccCCCCeEEEEEEEc-CC--C--CEEEECCCC
Confidence            1     11 223458899883        378999999998 11  1  288999964

Peptidase family C39 mostly contains bacteriocin-processing endopeptidases from bacteria. The cysteine peptidases in family C39 cleave the "double-glycine" leader peptides from the precursors of various bacteriocins (mostly non-lantibiotic). The cleavage is mediated by the transporter as part of the secretion process. Bacteriocins are antibiotic proteins secreted by some species of bacteria that inhibit the growth of other bacterial species. The bacteriocin is synthesized as a precursor with an N-terminal leader peptide, and processing involves removal of the leader peptide by cleavage at a Gly-Gly bond, followed by translocation of the mature bacteriocin across the cytoplasmic membrane. Most endopeptidases of family C39 are N-terminal domains in larger proteins (ABC transporters) that serve both functions. The proposed protease active site is conserved in this sub-family of proteins with a single peptidase domain, which are

>PF03412 Peptidase_C39: Peptidase C39 family This is family C39 in the peptidase classification

Probab=86.50  E-value=1.3  Score=36.58  Aligned_cols=97  Identities=19%  Similarity=0.276  Sum_probs=58.9

Q ss_pred             cccchhhHHHHHHHhhccCCCCCCCCChHHHHHHHHhcCCCCCCccccccccchhHHHHHHHHhhCCcEEEEEecCCCCh
Q 017729          192 WGCAYRSLQTIISWFRLQHYASVDVPSHREIQQALVDIGDKDPSFVGSREWIGAIELSFVLDKLLGVSCKVLNVRSGAEL  271 (367)
Q Consensus       192 WGCGYRnLQml~Sw~~~q~y~~~~vPSI~eIQq~Le~awDK~~~fvGSrkWIGT~Ev~~vL~~~lGI~ckIv~f~sg~e~  271 (367)
                      -.||-..+.|++.++...       -|..+|.+.+.          .++.-+.-.++.-+++. +|++++.+.++.. + 
T Consensus        11 ~dcg~acl~~l~~~~g~~-------~s~~~l~~~~~----------~~~~g~s~~~L~~~~~~-~gl~~~~~~~~~~-~-   70 (131)
T PF03412_consen   11 NDCGLACLAMLLKYYGIP-------VSEEELRRQLG----------TSEEGTSLADLKRAARK-YGLKAKAVKLNFE-K-   70 (131)
T ss_dssp             T-HHHHHHHHHHHHTT-----------HHHHHCCTT-----------BTTB--CCCHHHHHHH-TTEEEEEEE--GG-G-
T ss_pred             CCHHHHHHHHHHHHhCCC-------chHHHHHHHhc----------CCccCCCHHHHHHHHHh-cccceeeeecchh-h-
Confidence            469999999999995322       13334433221          12222334455566776 7999998876543 1 


Q ss_pred             hHHHHHHHHHhccCCCceEec-CCcceeEEEEEEEeCCCCceEEEEeCCCCCCch
Q 017729          272 PEKCRELALHFESQGTPIMIG-GGVLAYTLLGVDYNEASGDCAFLILDPHYTGND  325 (367)
Q Consensus       272 ~~l~~~l~~hF~~~gtPImig-g~ghS~TIvGVe~~~~~G~~~LLIlDPhytg~~  325 (367)
                                +.+...|+++. .++|--.|.|++.      -+++|+|| ..|..
T Consensus        71 ----------l~~~~~P~I~~~~~~h~vVi~~~~~------~~~~i~dP-~~g~~  108 (131)
T PF03412_consen   71 ----------LKRLPLPAIAHLKDGHFVVIYKIDD------GRVLIYDP-KKGKI  108 (131)
T ss_dssp             ----------CTCGGSSEEEEECCCEEEEEEEECC------CEEEECCT-TTCEE
T ss_pred             ----------hhhccccEEEEecCcceEEEEeEcC------cEEEEEeC-CCCeE
Confidence                      24567899998 7888888888832      34999999 55544

; InterPro: IPR005074 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Cysteine peptidases have characteristic molecular topologies, which can be seen not only in their three-dimensional structures, but commonly also in the two-dimensional structures. These are peptidases in which the nucleophile is the sulphydryl group of a cysteine residue. Cysteine proteases are divided into clans (proteins which are evolutionary related), and further sub-divided into families, on the basis of the architecture of their catalytic dyad or triad []. This group of sequences defined by this cysteine peptidase domain belong to the MEROPS peptidase family C39 (clan CA). It is found in a wide range of ABC transporters, which are maturation proteases for peptide bacteriocins, the proteolytic domain residing in the N-terminal region of the protein []. A number of the proteins are classified as non-peptidase homologues as they either have been found experimentally to be without peptidase activity, or lack amino acid residues that are believed to be essential for the catalytic activity. Lantibiotic and non-lantibiotic bacteriocins are synthesised as precursor peptides containing N-terminal extensions (leader peptides) which are cleaved off during maturation. Most non-lantibiotics and also some lantibiotics have leader peptides of the so-called double-glycine type. These leader peptides share consensus sequences and also a common processing site with two conserved glycine residues in positions -1 and -2. The double- glycine-type leader peptides are unrelated to the N-terminal signal sequences which direct proteins across the cytoplasmic membrane via the sec pathway. Their processing sites are also different from typical signal peptidase cleavage sites, suggesting that a different processing enzyme is involved. ; GO: 0005524 ATP binding, 0008233 peptidase activity, 0006508 proteolysis, 0016021 integral to membrane; PDB: 3K8U_A 3B79_A.

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	367
3oqc_A	481	Ubiquitin-Fold Modifier 1 Specific Protease, Ufsp2		2e-57
2z84_A	218	Insights From Crystal And Solution Structures Of Mo		2e-24

>pdb|3OQC|A Chain A, Ubiquitin-Fold Modifier 1 Specific Protease, Ufsp2 Length = 481

Iteration: 1
 Score =  219 bits (558), Expect = 2e-57,   Method: Compositional matrix adjust.
 Identities = 126/319 (39%), Positives = 179/319 (56%), Gaps = 44/319 (13%)
Query: 75  LSKLVVPGLVDQLNTMKKAIMPYLL-TQHPQLRPFHFSPPGVLQPITVIYELSYGETEMK 133
           + KL+V  ++ QL  ++K I+ Y+  T      P HF  PG    +TV+Y     + +++
Sbjct: 177 VRKLLVDAILRQLVDVEKCILRYMKGTSIVVPEPLHFQLPGKKNLVTVLYPSGIPDDQLQ 236
Query: 134 Q------------ADLTTFSRCVSN-----------LRSLRCQL----IVEALSCIVHLA 166
                         D   F R  +            +R+    L    I  ++ C+V   
Sbjct: 237 AYRKELHDLFNLPHDRPYFKRINAYHFPDELYKDGYIRNPHTYLSPPNIEGSMICVVQGT 296
Query: 167 LVKHKNLKIMSALSWMLKWSTFSLGWGCAYRSLQTIISWFRLQHYASVDVPSHREIQQAL 226
              H            ++      GWG AYRSLQTI SWFR Q Y    +P+HREIQQAL
Sbjct: 297 YAYHH----------YMQDRIDDNGWGSAYRSLQTICSWFRHQGYTERSIPTHREIQQAL 346
Query: 227 VDIGDKDPSFVGSREWIGAIELSFVLDKLLGVSCKVLNVRSGAELPEKCRELALHFESQG 286
           VD GDK  +FVGSR+WIG+IE+  VL++L+GV+ K+L V  G+E+  + RELA HF++ G
Sbjct: 347 VDAGDKPATFVGSRQWIGSIEVQMVLNQLIGVTSKILFVNQGSEMASQGRELANHFQNVG 406
Query: 287 TPIMIGGGVLAYTLLGVDYNEASGDCAFLILDPHYTGNDEHKKIVNGGWCGWKKAVDSKG 346
           TP+M+GGGVLA+T+LGV +NE +G   FLILDPHYTG ++ + ++  GWCGWK       
Sbjct: 407 TPVMVGGGVLAHTILGVAWNETTGQIKFLILDPHYTGAEDLQVMLEKGWCGWKSP----- 461
Query: 347 KNFFLHDKFYNLLLPQRPS 365
            +F+  D +YNL LPQRP+
Sbjct: 462 -DFWNKDAYYNLCLPQRPN 479

>pdb|2Z84|A Chain A, Insights From Crystal And Solution Structures Of Mouse Ufsp1 Length = 218

Iteration: 1
 Score =  109 bits (273), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 67/171 (39%), Positives = 92/171 (53%), Gaps = 12/171 (7%)
Query: 191 GWGCAYRSLQTIISWFRLQHYASVDVPSHREIQQALVDIGDKDPSFVGSREWIGAIELSF 250
           GWGC YR+LQT+ SW   Q   S  VP    +Q AL  +GDK P F GSR WIG +E S 
Sbjct: 45  GWGCGYRTLQTLCSWPGGQ---SSGVPGLPALQGALEAMGDKPPGFRGSRNWIGCVEASL 101
Query: 251 VLDKLLGVSCKVLNVRSGAELPEKCRELALHFESQGTPIMIGGGVLAYT--LLGVDYNEA 308
            L+   G   ++ ++  G  L  +   L  HF + G P+M+GG   A +  LLG+     
Sbjct: 102 CLEHFGGPQGRLCHLPRGVGLRGEEERLYSHFTTGGGPVMVGGDADAQSKALLGICEGPG 161
Query: 309 SGDCAFLILDPHYTGNDEHK-KIVNGGWCGWKKAVDSKGKNFFLHDKFYNL 358
           S +   LILDPHY G  +++ ++   GW GW+K      K+ F  + FYNL
Sbjct: 162 S-EVYVLILDPHYWGTPKNRCELQAAGWVGWQKV-----KSVFDSNSFYNL 206

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	367
3oqc_A	481	UFSP2, UFM1-specific protease 2; DPH motif Cys pro	1e-121
2z84_A	218	UFSP1, UFM1-specific protease 1; alpha/beta, papai	1e-81

>3oqc_A UFSP2, UFM1-specific protease 2; DPH motif Cys protease, hydrolase; 2.60A {Mus musculus} Length = 481

 Score =  357 bits (918), Expect = e-121
 Identities = 132/372 (35%), Positives = 197/372 (52%), Gaps = 38/372 (10%)

Query: 19  DKIQVSVLLNTSQKPTKSTAPIAEYYPALEDARLLVVDWKLDVLCYATKRLPLIYALSKL 78
             + + ++L  S  P  +  PI E     E+   + +   +D +            + KL
Sbjct: 125 QIVNIDLMLEIS-TPLGAVTPILEAEN--EEHHYINMSLPIDAVVSVAPEES-WGKVRKL 180

Query: 79  VVPGLVDQLNTMKKAIMPYLLTQHPQL-RPFHFSPPGVLQPITVIYELSYGETEMKQA-- 135
           +V  ++ QL  ++K I+ Y+      +  P HF  PG    +TV+Y     + +++    
Sbjct: 181 LVDAILRQLVDVEKCILRYMKGTSIVVPEPLHFQLPGKKNLVTVLYPSGIPDDQLQAYRK 240

Query: 136 ----------DLTTFSRCVSNLRSLRCQLIVEALSCIVHLALVKHKNLKIMSALSWMLKW 185
                     D   F R   N      +L  +      H  L       I  ++  +++ 
Sbjct: 241 ELHDLFNLPHDRPYFKR--INAYHFPDELYKDGYIRNPHTYL---SPPNIEGSMICVVQG 295

Query: 186 STF----------SLGWGCAYRSLQTIISWFRLQHYASVDVPSHREIQQALVDIGDKDPS 235
           +              GWG AYRSLQTI SWFR Q Y    +P+HREIQQALVD GDK  +
Sbjct: 296 TYAYHHYMQDRIDDNGWGSAYRSLQTICSWFRHQGYTERSIPTHREIQQALVDAGDKPAT 355

Query: 236 FVGSREWIGAIELSFVLDKLLGVSCKVLNVRSGAELPEKCRELALHFESQGTPIMIGGGV 295
           FVGSR+WIG+IE+  VL++L+GV+ K+L V  G+E+  + RELA HF++ GTP+M+GGGV
Sbjct: 356 FVGSRQWIGSIEVQMVLNQLIGVTSKILFVNQGSEMASQGRELANHFQNVGTPVMVGGGV 415

Query: 296 LAYTLLGVDYNEASGDCAFLILDPHYTGNDEHKKIVNGGWCGWKKAVDSKGKNFFLHDKF 355
           LA+T+LGV +NE +G   FLILDPHYTG ++ + ++  GWCGWK        +F+  D +
Sbjct: 416 LAHTILGVAWNETTGQIKFLILDPHYTGAEDLQVMLEKGWCGWKSP------DFWNKDAY 469

Query: 356 YNLLLPQRPSMV 367
           YNL LPQRP+ +
Sbjct: 470 YNLCLPQRPNAL 481

>2z84_A UFSP1, UFM1-specific protease 1; alpha/beta, papain like fold, hydrolase, thiol protease, UBL conjugation pathway; 1.70A {Mus musculus} Length = 218

 Score =  247 bits (632), Expect = 1e-81
 Identities = 63/177 (35%), Positives = 86/177 (48%), Gaps = 10/177 (5%)

Query: 191 GWGCAYRSLQTIISWFRLQHYASVDVPSHREIQQALVDIGDKDPSFVGSREWIGAIELSF 250
           GWGC YR+LQT+ SW   Q      VP    +Q AL  +GDK P F GSR WIG +E S 
Sbjct: 45  GWGCGYRTLQTLCSWPGGQSSG---VPGLPALQGALEAMGDKPPGFRGSRNWIGCVEASL 101

Query: 251 VLDKLLGVSCKVLNVRSGAELPEKCRELALHFESQGTPIMIGGGVLAYTLLGVDYNE-AS 309
            L+   G   ++ ++  G  L  +   L  HF + G P+M+GG   A +   +   E   
Sbjct: 102 CLEHFGGPQGRLCHLPRGVGLRGEEERLYSHFTTGGGPVMVGGDADAQSKALLGICEGPG 161

Query: 310 GDCAFLILDPHYTGN-DEHKKIVNGGWCGWKKAVDSKGKNFFLHDKFYNLLLPQRPS 365
            +   LILDPHY G      ++   GW GW+K      K+ F  + FYNL   +   
Sbjct: 162 SEVYVLILDPHYWGTPKNRCELQAAGWVGWQKV-----KSVFDSNSFYNLCFTRLEH 213

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	367
3oqc_A	481	UFSP2, UFM1-specific protease 2; DPH motif Cys pro	100.0
2z84_A	218	UFSP1, UFM1-specific protease 1; alpha/beta, papai	100.0
2p82_A	355	Cysteine protease ATG4A; autophagy, hydrolase, pro	98.08
2cy7_A	396	Cysteine protease APG4B; papain-like fold, autopha	98.05
3erv_A	236	Putative C39-like peptidase; structural genomics,	89.02

>3oqc_A UFSP2, UFM1-specific protease 2; DPH motif Cys protease, hydrolase; 2.60A {Mus musculus}

Probab=100.00  E-value=2.5e-99  Score=758.16  Aligned_cols=331  Identities=38%  Similarity=0.682  Sum_probs=295.6

Q ss_pred             cceeEEEEEeecCCCCCCCCCCeeeeecCcccceeEEEeeeeeEEEEecccCcHHHHHHHhhHHHHHHHHHHHHHHhhch
Q 017729           18 GDKIQVSVLLNTSQKPTKSTAPIAEYYPALEDARLLVVDWKLDVLCYATKRLPLIYALSKLVVPGLVDQLNTMKKAIMPY   97 (367)
Q Consensus        18 ~~~~~~~~~~~~~~~~~~~~~p~~~y~~~~~~~~~~~~~~~ld~l~~~~~~~~~~~~~~~l~~~~l~~ql~~~~~~~~~~   97 (367)
                      -++|+|.+|.+.|...+ +.+|++++-.  .....+.+++++|+++.++++.++..+ .++|++++++||+.|+++++++
T Consensus       124 ~~vi~~~~~~~~~~~~~-~~~p~i~~~~--~~~~~~~~~l~vd~~~~v~~~~~~~~~-~~~l~~~~~~ql~~~e~~~~~~  199 (481)
T 3oqc_A          124 QQIVNIDLMLEISTPLG-AVTPILEAEN--EEHHYINMSLPIDAVVSVAPEESWGKV-RKLLVDAILRQLVDVEKCILRY  199 (481)
T ss_dssp             CEEEEEEEEECCC--------------------CEEEEEEEEEEEEEECTTSBTTSH-HHHHHHHHHHHHHHHHHHHHHH
T ss_pred             ceEEeehhhhhhcCCCC-ccceEEEEec--ccceEEEEEeEeeEEEEecccccHHHH-HHHHHHHHHHHHHHHHHHHHHh
Confidence            48999999999988775 7789999766  456778899999999999999999886 4899999999999999999998


Q ss_pred             hhh-cCCCccceeecCCCCCCCeEEEecCCCCcchhhhhhhcccccchhhhhhhhhhc--------ccccccccc---cc
Q 017729           98 LLT-QHPQLRPFHFSPPGVLQPITVIYELSYGETEMKQADLTTFSRCVSNLRSLRCQL--------IVEALSCIV---HL  165 (367)
Q Consensus        98 ~~~-~~~~~~~~hf~p~~~~~~~t~~y~~~~~~~~~~~~~~r~~~~~~~~lh~~~l~l--------~~n~~~~~~---~~  165 (367)
                      +++ +...+++|||+|++++|+|||+||.+.+|++  ..++|+      .|| ++|.|        ++||++|++   ..
T Consensus       200 ~~~~~~~~~~~~hf~~~~~~~~~tv~yp~~~~d~~--~~~~R~------~lH-~~~~Lp~~rP~~R~~na~~~~~~~~~~  270 (481)
T 3oqc_A          200 MKGTSIVVPEPLHFQLPGKKNLVTVLYPSGIPDDQ--LQAYRK------ELH-DLFNLPHDRPYFKRINAYHFPDELYKD  270 (481)
T ss_dssp             CBTTBCCCEEEEEECCTTCSSCEEEEEETTCCGGG--SHHHHH------HHH-HHTTCCTTSCSSSGGGSCCCTTCCCTT
T ss_pred             hcCCccccCccceecCCCCCccEEEEcCCCCCcHH--HHHHHH------HHH-HHhCCCcCCCeeeeeccccCCCCcccc
Confidence            875 5678899999999999999999999887633  446999      899 68888        689999964   47


Q ss_pred             cccccccccc---------eeeeecC------CCCCCCCCCcccchhhHHHHHHHhhccCCCCCCCCChHHHHHHHHhcC
Q 017729          166 ALVKHKNLKI---------MSALSWM------LKWSTFSLGWGCAYRSLQTIISWFRLQHYASVDVPSHREIQQALVDIG  230 (367)
Q Consensus       166 ~lL~n~H~~l---------~~lv~G~------~qd~~~D~GWGCGYRnLQml~Sw~~~q~y~~~~vPSI~eIQq~Le~aw  230 (367)
                      ++|+|||++|         +++|+|+      +||+++|+||||||||||||||||+.|+|+.++||||++||++||+||
T Consensus       271 ~lL~n~H~~L~~p~~~~g~~~lv~G~Y~Y~HY~qD~~~D~GWGCGYRnlQtl~Swl~~q~y~~~~iPsi~~IQ~~Le~ag  350 (481)
T 3oqc_A          271 GYIRNPHTYLSPPNIEGSMICVVQGTYAYHHYMQDRIDDNGWGSAYRSLQTICSWFRHQGYTERSIPTHREIQQALVDAG  350 (481)
T ss_dssp             CCCBCSGGGSCCCSCSSCEEEECCSCCBCCCSSBTTBCCTTTCHHHHHHHHHHHHHHHTTSCCSCCCCHHHHHHHHHHHT
T ss_pred             ccccccccCCCCCCCCCceEEEEEeeeeEEEeccCCCCCCCcccchhHHHHHHHHHHhcCCCCCCCCCHHHHHHHHHhcc
Confidence            8999999999         8999999      999999999999999999999999999999999999999999999999


Q ss_pred             CCCCCccccccccchhHHHHHHHHhhCCcEEEEEecCCCChhHHHHHHHHHhccCCCceEecCCcceeEEEEEEEeCCCC
Q 017729          231 DKDPSFVGSREWIGAIELSFVLDKLLGVSCKVLNVRSGAELPEKCRELALHFESQGTPIMIGGGVLAYTLLGVDYNEASG  310 (367)
Q Consensus       231 DK~~~fvGSrkWIGT~Ev~~vL~~~lGI~ckIv~f~sg~e~~~l~~~l~~hF~~~gtPImigg~ghS~TIvGVe~~~~~G  310 (367)
                      ||+++|+|||+||||+|++++|++++||+|||++|++|++++.+++||++||+++|+||||||++||+||+|||+++.+|
T Consensus       351 Dk~~~f~GSRkWIGT~Ev~~vL~~llgI~cri~~~~~g~el~~l~~~L~~hF~~~GtPImiGG~~~S~TIlGVe~~~~tG  430 (481)
T 3oqc_A          351 DKPATFVGSRQWIGSIEVQMVLNQLIGVTSKILFVNQGSEMASQGRELANHFQNVGTPVMVGGGVLAHTILGVAWNETTG  430 (481)
T ss_dssp             SSCGGGTTCCCCCCHHHHHHHHHHHHCCCEEEEEECCGGGGGGGHHHHHHHHTTTCCCEEEEETTEEEEEEEEEECTTTC
T ss_pred             CCccccccccceechHHHHHHHHHhcCCcEEEEEecChhhHHHHHHHHHHHHhccCCCEEecCCCCCceEEEEEEecCCC
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999998789


Q ss_pred             ceEEEEeCCCCCCchhhhhhhcCCeEeEEecccCCCccccccCCeeeeccCCCCCCC
Q 017729          311 DCAFLILDPHYTGNDEHKKIVNGGWCGWKKAVDSKGKNFFLHDKFYNLLLPQRPSMV  367 (367)
Q Consensus       311 ~~~LLIlDPhytg~~~lk~l~~kGw~gWKk~~~~~g~~~f~~~~fYNLClPq~p~~v  367 (367)
                      +++||||||||+|++++++|++|||||||+      ++||++++||||||||||++.
T Consensus       431 ~~~lLIlDPHytg~~~l~~i~~kGwv~Wk~------~~ff~~~sfYNLCLPqrp~~~  481 (481)
T 3oqc_A          431 QIKFLILDPHYTGAEDLQVMLEKGWCGWKS------PDFWNKDAYYNLCLPQRPNAL  481 (481)
T ss_dssp             CEEEEEECTTCCSCSCHHHHHHTTSEEEEC------TTSSCSSSCEEEEEECCCCCC
T ss_pred             eEEEEEECCCCCChHHHHHHHhCCeecccc------ccccccCCeeeeccCCCCCCC
Confidence            999999999999999999999999999994      499999999999999999974

>2z84_A UFSP1, UFM1-specific protease 1; alpha/beta, papain like fold, hydrolase, thiol protease, UBL conjugation pathway; 1.70A {Mus musculus}

Probab=100.00  E-value=3.6e-77  Score=553.44  Aligned_cols=192  Identities=36%  Similarity=0.648  Sum_probs=182.9

Q ss_pred             cccccccccccc---------eeeeecC------CCCCCCCCCcccchhhHHHHHHHhhccCCCCCCCCChHHHHHHHHh
Q 017729          164 HLALVKHKNLKI---------MSALSWM------LKWSTFSLGWGCAYRSLQTIISWFRLQHYASVDVPSHREIQQALVD  228 (367)
Q Consensus       164 ~~~lL~n~H~~l---------~~lv~G~------~qd~~~D~GWGCGYRnLQml~Sw~~~q~y~~~~vPSI~eIQq~Le~  228 (367)
                      .++||+|||++|         +++|+|+      +||+++|.||||||||||||+||   |+|++++||||++||++||+
T Consensus         3 ~~~~l~n~H~~l~~p~~~g~~~~~v~G~y~Y~HY~~d~~~D~GWGCgYRnlQml~Sw---q~y~~~~iPsi~~IQ~~Le~   79 (218)
T 2z84_A            3 TLELLKDVHLGLPVPCHDPARLALLSGHYLYYHYGCDGLDDRGWGCGYRTLQTLCSW---PGGQSSGVPGLPALQGALEA   79 (218)
T ss_dssp             CCCCCBCTTTTCCCSSSSCSEEEECCSBCBCCCTTTTSCCCTTTCHHHHHHHHHHTT---TBTCCTTCCCHHHHHHHHHH
T ss_pred             ccccccChhhcCCCCCCCCcEEEEEEeeeeEEEeccCCcccCCcccchhhhHHHHhh---ccccCCCCCCHHHHHHHHHH
Confidence            467999999998         7999999      79999999999999999999999   79999999999999999999


Q ss_pred             cCCCCCCccccccccchhHHHHHHHHhhCCcEEEEEecCCCChhHHHHHHHHHhccCCCceEec--CCcceeEEEEEEEe
Q 017729          229 IGDKDPSFVGSREWIGAIELSFVLDKLLGVSCKVLNVRSGAELPEKCRELALHFESQGTPIMIG--GGVLAYTLLGVDYN  306 (367)
Q Consensus       229 awDK~~~fvGSrkWIGT~Ev~~vL~~~lGI~ckIv~f~sg~e~~~l~~~l~~hF~~~gtPImig--g~ghS~TIvGVe~~  306 (367)
                      ||||+++|+||||||||+|+++||++|+||+|||++|++|++++.+++||++||++.|+|||||  +++||+|||||| +
T Consensus        80 awdkg~~~~GSrkWIGt~E~~~~l~sllgI~cki~~~~~g~~~~~~~~~l~~hF~~~g~PI~igG~~~ghS~tIvGve-~  158 (218)
T 2z84_A           80 MGDKPPGFRGSRNWIGCVEASLCLEHFGGPQGRLCHLPRGVGLRGEEERLYSHFTTGGGPVMVGGDADAQSKALLGIC-E  158 (218)
T ss_dssp             TTSSCTTCTTCCCCCCHHHHHHHHHHTTCSEEEEEEECSCSTTTTCHHHHHHHHHTTCCCEEECCTTTSCCEEEEEEE-E
T ss_pred             ccccCCccccccceechHHHHHHHHhhcCCceEEEEccCchhHHHHHHHHHHHHhcCCCCEEECCCcccccceEEeEE-e
Confidence            9999999999999999999999999999999999999999999999999999999999999999  569999999999 5


Q ss_pred             CCCCceEEEEeCCCCCC-chhhhhhhcCCeEeEEecccCCCccccccCCeeeeccCCCC
Q 017729          307 EASGDCAFLILDPHYTG-NDEHKKIVNGGWCGWKKAVDSKGKNFFLHDKFYNLLLPQRP  364 (367)
Q Consensus       307 ~~~G~~~LLIlDPhytg-~~~lk~l~~kGw~gWKk~~~~~g~~~f~~~~fYNLClPq~p  364 (367)
                      ..+|+++||||||||++ ++++++|++||||+||++     ++||++++||||||||+-
T Consensus       159 ~~~g~~~lLIlDPhy~~~~~~~~~i~~~Gw~~Wk~~-----~~~f~~~~fYNlclp~~~  212 (218)
T 2z84_A          159 GPGSEVYVLILDPHYWGTPKNRCELQAAGWVGWQKV-----KSVFDSNSFYNLCFTRLE  212 (218)
T ss_dssp             CTTCCEEEEEECCCCCSCCCCHHHHHHHTSEEEEEH-----HHHSCTTSCEEEEEEEC-
T ss_pred             cCCCcEEEEEECCCcCCchHHHHHHHhCCceeeech-----hhhhccccHHHhccCchh
Confidence            57899999999999999 889999999999999966     389999999999999974

>2p82_A Cysteine protease ATG4A; autophagy, hydrolase, protein transport, thiol Pro transport, UBL conjugation pathway, structural genomics; 2.10A {Homo sapiens} SCOP: d.3.1.22

Probab=98.08  E-value=9.2e-06  Score=80.19  Aligned_cols=67  Identities=27%  Similarity=0.469  Sum_probs=42.6

Q ss_pred             CCCCcccchhhHHHHHHH-hhc----cCCCC-CCCCChHHHHHHHHhcCCCC----------------CCccccccccch
Q 017729          188 FSLGWGCAYRSLQTIISW-FRL----QHYAS-VDVPSHREIQQALVDIGDKD----------------PSFVGSREWIGA  245 (367)
Q Consensus       188 ~D~GWGCGYRnLQml~Sw-~~~----q~y~~-~~vPSI~eIQq~Le~awDK~----------------~~fvGSrkWIGT  245 (367)
                      .|.||||-.|+-|||+.= +..    ..+.- ..-+.-.+.+++|.--.|++                +...|  +|.|-
T Consensus        67 SD~GWGCMlRsgQMlLAqaL~~~~LGr~wr~~~~~~~~~~~~~Il~~F~D~~~apfSIH~iv~~g~~~gk~~G--eWfGP  144 (355)
T 2p82_A           67 SDAGWGCMLRCGQMMLAQALICRHLGRDWSWEKQKEQPKEYQRILQCFLDRKDCCYSIHQMAQMGVGEGKSIG--EWFGP  144 (355)
T ss_dssp             CCTTTCHHHHHHHHHHHHHHHHHHTCTTCCTTSCSSCCHHHHHHHHTTSSSTTSTTSHHHHHHHHHTTTCCTT--CCCCH
T ss_pred             CCCccceeeehhHHHHHHHHHHHhcCccccccccccccHHHHHHHHhcCCCCCCCccHHHHHHHHHHcCCCcc--cccCH
Confidence            699999999999999875 322    12211 11112233344444444443                34444  99999


Q ss_pred             hHHHHHHHHhh
Q 017729          246 IELSFVLDKLL  256 (367)
Q Consensus       246 ~Ev~~vL~~~l  256 (367)
                      ..++.+|..+.
T Consensus       145 s~va~~lk~L~  155 (355)
T 2p82_A          145 NTVAQVLKKLA  155 (355)
T ss_dssp             HHHHHHHHHHH
T ss_pred             HHHHHHHHHHH
Confidence            99999999875

>2cy7_A Cysteine protease APG4B; papain-like fold, autophagy, hydrolase; 1.90A {Homo sapiens} SCOP: d.3.1.22 PDB: 2d1i_A 2zzp_A 2z0d_A 2z0e_A

Probab=98.05  E-value=2.3e-05  Score=78.38  Aligned_cols=66  Identities=24%  Similarity=0.398  Sum_probs=41.8

Q ss_pred             CCCCcccchhhHHHHHHH-hhc----cCCCC-CCCCChHHHHHHHHhcCCCC----------------CCccccccccch
Q 017729          188 FSLGWGCAYRSLQTIISW-FRL----QHYAS-VDVPSHREIQQALVDIGDKD----------------PSFVGSREWIGA  245 (367)
Q Consensus       188 ~D~GWGCGYRnLQml~Sw-~~~----q~y~~-~~vPSI~eIQq~Le~awDK~----------------~~fvGSrkWIGT  245 (367)
                      -|.||||-.|+-|||+.= +..    ..+.- ..-....+.+++|.--.|++                ++..|  +|-|-
T Consensus        71 SD~GWGCMlRsgQMlLAqaL~~~~LGrdwr~~~~~~~~~~~~~Il~~F~D~~~apFSIH~iv~~G~~~gk~~G--eWfGP  148 (396)
T 2cy7_A           71 SDTGWGCMLRCGQMIFAQALVCRHLGRDWRWTQRKRQPDSYFSVLNAFIDRKDSYYSIHQIAQMGVGEGKSIG--QWYGP  148 (396)
T ss_dssp             BCTTTCHHHHHHHHHHHHHHHHHHTCTTCCCCTTSCCCHHHHHHHHTTSSSTTSTTCHHHHHHHHHTTTCCTT--CCCCH
T ss_pred             CCCCccceeeccHHHHHHHHHHHHhcccccccccccCcHHHHHHHHHhCCCCCCcchHHHHHHHHHhcCCCcc--cccCH
Confidence            699999999999999874 332    22221 11111233444554444543                23333  89999


Q ss_pred             hHHHHHHHHh
Q 017729          246 IELSFVLDKL  255 (367)
Q Consensus       246 ~Ev~~vL~~~  255 (367)
                      ..++.+|..+
T Consensus       149 s~va~~lk~L  158 (396)
T 2cy7_A          149 NTVAQVLKKL  158 (396)
T ss_dssp             HHHHHHHHHH
T ss_pred             HHHHHHHHHH
Confidence            9999999986

>3erv_A Putative C39-like peptidase; structural genomics, unknown function, PSI-2, protein structure initiative; 2.10A {Bacillus anthracis}

Probab=89.02  E-value=2.1  Score=39.76  Aligned_cols=112  Identities=21%  Similarity=0.327  Sum_probs=75.4

Q ss_pred             CcccchhhHHHHHHHhhccCCCCCCCCChHHHHHHHHh--------cCCCCCCccccc-------cccchhHHHHHHHHh
Q 017729          191 GWGCAYRSLQTIISWFRLQHYASVDVPSHREIQQALVD--------IGDKDPSFVGSR-------EWIGAIELSFVLDKL  255 (367)
Q Consensus       191 GWGCGYRnLQml~Sw~~~q~y~~~~vPSI~eIQq~Le~--------awDK~~~fvGSr-------kWIGT~Ev~~vL~~~  255 (367)
                      --||+==|++|++.+.-.       -.+-.+|.+-|..        -+|...+|+|+=       -+|-..++..+.+.|
T Consensus        47 ~~gCe~tSlam~L~y~G~-------~~~~~~la~~l~~~p~~~~g~~gnP~~gFvG~p~~~~~~g~giy~~~i~~~a~~y  119 (236)
T 3erv_A           47 DRGCEVTSLAMMLQYAGI-------TVDKMKLANEIKKVDFMNDGVRGNPNEGFVGNIYTFSESGYGVYHGPLFQLAKKY  119 (236)
T ss_dssp             TTCHHHHHHHHHHHHTTC-------CCCHHHHHHHSCEECSEETTEECCTTTSEEBCSSCTTSCBCCCCHHHHHHHHHHH
T ss_pred             CCCCHHHHHHHHHHHcCc-------CCCHHHHHHHHhhCcccccCCCCCCccCccCCccccCCCcceeecHHHHHHHHHH
Confidence            357999999999999422       1233455554432        235556888882       356778888889987


Q ss_pred             hCCcEEEEEecCCCChhHHHHHHHHHhccCCCceEec--------------------------CCcceeEEEEEEEeCCC
Q 017729          256 LGVSCKVLNVRSGAELPEKCRELALHFESQGTPIMIG--------------------------GGVLAYTLLGVDYNEAS  309 (367)
Q Consensus       256 lGI~ckIv~f~sg~e~~~l~~~l~~hF~~~gtPImig--------------------------g~ghS~TIvGVe~~~~~  309 (367)
                      ++-  +++++ +|.+++++.++|.     .|.||++-                          ..+|.-.|+|++.+   
T Consensus       120 ~~~--~~~dl-tG~sl~~L~~~I~-----~G~PVIv~~t~~~~p~~~~~~~~W~~~~G~~~~~~~~H~VVl~GYd~~---  188 (236)
T 3erv_A          120 LPN--KAVDL-TGKSIEELYKSVK-----AGQPVVIITNATFAPLDEDEFTTWETNNGDVSITYNEHCVVLIGYDQE---  188 (236)
T ss_dssp             CTT--TEEEC-TTSCHHHHHHHHH-----TTCCEEEEEETTSSCCCGGGCEEEEETTEEEEECTTEEEEEEEEECSS---
T ss_pred             hhc--ceeec-CCCCHHHHHHHHH-----CCCeEEEEEeCCcccccccccceeecCCCceeeccCCeEEEEEEEeCC---
Confidence            532  45554 5677777777774     48888862                          24588889998642   


Q ss_pred             CceEEEEeCCCCCC
Q 017729          310 GDCAFLILDPHYTG  323 (367)
Q Consensus       310 G~~~LLIlDPhytg  323 (367)
                         ++.|.||....
T Consensus       189 ---~vyi~DP~~g~  199 (236)
T 3erv_A          189 ---SVYIRDPLKDS  199 (236)
T ss_dssp             ---EEEEECTTSCC
T ss_pred             ---EEEEECCCCCC
Confidence               58899998643

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	367
d2z0da1	350	Cysteine protease ATG4B {Human (Homo sapiens) [Tax	97.96
d2p82a1	334	Cysteine protease ATG4A {Human (Homo sapiens) [Tax	97.89

>d2z0da1 d.3.1.22 (A:5-354) Cysteine protease ATG4B {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Cysteine proteinases
superfamily: Cysteine proteinases
family: Autophagin-like
domain: Cysteine protease ATG4B
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.96  E-value=2.2e-05  Score=74.85  Aligned_cols=67  Identities=22%  Similarity=0.349  Sum_probs=38.6

Q ss_pred             CCCCcccchhhHHHHHHH-hhcc----CCCC-CCCCChHHHHHHHHhcCCCC----------------CCccccccccch
Q 017729          188 FSLGWGCAYRSLQTIISW-FRLQ----HYAS-VDVPSHREIQQALVDIGDKD----------------PSFVGSREWIGA  245 (367)
Q Consensus       188 ~D~GWGCGYRnLQml~Sw-~~~q----~y~~-~~vPSI~eIQq~Le~awDK~----------------~~fvGSrkWIGT  245 (367)
                      -|.||||-.|+-|||+.- ++..    ++.- ..-....+..++|.--.|.+                +...  .+|-|-
T Consensus        64 SD~GWGCMlRsgQMlLA~aL~~~~lgr~wr~~~~~~~~~~~~~Il~~F~D~~~apfSIH~iv~~g~~~gk~~--GeWfGP  141 (350)
T d2z0da1          64 SDTGWGCMLRCGQMIFAQALVCRHLGRDWRWTQRKRQPDSYFSVLNAFIDRKDSYYSIHQIAQMGVGEGKSI--GQWYGP  141 (350)
T ss_dssp             BCTTTCHHHHHHHHHHHHHHHHHHTCTTCCCCTTSCCCHHHHHHHHTTSSSTTSTTCHHHHHHHHHHTTCCT--TCCBCH
T ss_pred             CCCchhHHHHHHHHHHHHHHHHHhcCCcccccccccCcHHHHHHHHhhcCCCCCCcCHHHHHHHHHHhCCCC--ccccCH
Confidence            599999999999999885 4321    2220 01111122222222222222                2222  479999


Q ss_pred             hHHHHHHHHhh
Q 017729          246 IELSFVLDKLL  256 (367)
Q Consensus       246 ~Ev~~vL~~~l  256 (367)
                      ..++.++..+.
T Consensus       142 s~~a~~ik~L~  152 (350)
T d2z0da1         142 NTVAQVLKKLA  152 (350)
T ss_dssp             HHHHHHHHHHH
T ss_pred             HHHHHHHHHHH
Confidence            99999998754

>d2p82a1 d.3.1.22 (A:26-359) Cysteine protease ATG4A {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Cysteine proteinases
superfamily: Cysteine proteinases
family: Autophagin-like
domain: Cysteine protease ATG4A
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.89  E-value=3.1e-05  Score=73.40  Aligned_cols=69  Identities=25%  Similarity=0.399  Sum_probs=39.6

Q ss_pred             CCCCcccchhhHHHHHHH-hhc----cCCC-CCCCCChHHHHHHHHhcCCCCC--------------CccccccccchhH
Q 017729          188 FSLGWGCAYRSLQTIISW-FRL----QHYA-SVDVPSHREIQQALVDIGDKDP--------------SFVGSREWIGAIE  247 (367)
Q Consensus       188 ~D~GWGCGYRnLQml~Sw-~~~----q~y~-~~~vPSI~eIQq~Le~awDK~~--------------~fvGSrkWIGT~E  247 (367)
                      -|.||||-.|+-|||+.- ++.    .++. ...-..-.+.+++|.--.|.+.              .-.--.+|-|-..
T Consensus        46 SD~GWGCMlRsgQMlLA~aL~~~~lgr~wr~~~~~~~~~~~~~Il~~F~D~~~apfSIH~iv~~g~~~gk~~G~WfgPs~  125 (334)
T d2p82a1          46 SDAGWGCMLRCGQMMLAQALICRHLGRDWSWEKQKEQPKEYQRILQCFLDRKDCCYSIHQMAQMGVGEGKSIGEWFGPNT  125 (334)
T ss_dssp             CCTTTCHHHHHHHHHHHHHHHHHHTCTTCCTTSCSSCCHHHHHHHHTTSSSTTSTTSHHHHHHHHHTTTCCTTCCCCHHH
T ss_pred             CCcChhHHHHHHHHHHHHHHHHHhcCCccccccccCccHHHHHHHHHhcCCCCCCccHHHHHHHHHHcCCCcccccCHHH
Confidence            699999999999999885 422    1222 0011111233333333223220              0011258999999


Q ss_pred             HHHHHHHhh
Q 017729          248 LSFVLDKLL  256 (367)
Q Consensus       248 v~~vL~~~l  256 (367)
                      ++.++..+.
T Consensus       126 ~a~~i~~L~  134 (334)
T d2p82a1         126 VAQVLKKLA  134 (334)
T ss_dssp             HHHHHHHHH
T ss_pred             HHHHHHHHH
Confidence            999988765