Citrus Sinensis ID: 017738

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360------
Protein Sequence
MLNANSSGDGDGYPGDWMRTCNTCKAAVSTLYCHTHLAYFCDSCDERVHAYNSMALPHERMWVSAACENGQATFSCNTDAASLRLSCDADKHLANFLAHHHHARVPAPPFSDLFTAPSSTYLPDPMFDTEKEVTAPTIEVDEDEMDSWLLLEPANHDNQMNSGHTYVQELDESFGMEYNSCTKHECQDQNNLQQLQCTHRGDNGSDGVVPVQPFQVKDKEEQQKQQQQQENEYFSRKYEASKAAFINNPSMSQTVPVSGILPKATRADISSSYTKYSQGTNDLFPNFSFFVPLQFSPMNRVAKVLRYREKRKARRFEKKIRYASRKAYAEARPRVKGRFARKTEMDFEVDEMFSIEEYGYGIVPSY
Secondary Structure (PSIPRED)
ccccccccccccccccccccccccccccEEEEEccccccccHHHHcccccccccccccEEEcccccccccccEEEEccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHcccccccccccccccccccccHHHHHHHHHccccHHHHHHcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHccccEEHHHHHHHHHHccccccccccccccccccccccccccccccccccc
Secondary Structure Prediction (SSPRO)
ccccccccccccccccccccccccccccEEEEEccccHHHHHHcHHHHHHHHHHHHccccEEHHHHHccccEEEEEcHcHHHHHHHccHccccccHHHHHccccccEcccccccccccccccccccccccHHcccccccccHHHHcHHcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccEEEccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHcHHHHHHHHHHHHHHccHHcEEEHHHHHHHHHcccccccEEEEccccccccccccccccccccccccc
Coil and Loop (DISEMBL)
mlnanssgdgdgypgdwmrtcNTCKAAVSTLYCHTHLAYFCDSCDERVHaynsmalpherMWVSAACEngqatfscntdaasLRLSCDADKHLANFLahhhharvpappfsdlftapsstylpdpmfdtekevtaptievdedemdswlllepanhdnqmnsghTYVQELDEsfgmeynsctkhecqdqnnlqqlqcthrgdngsdgvvpvqpfqvkdKEEQQKQQQQQENEYFSRKYEASKAafinnpsmsqtvpvsgilpkatradisssytkysqgtndlfpnfsffvplqfspmnRVAKVLRYREKRKARRFEKKIRYASRKAYAEARPRVKGRFARKTEMDFEVDEMFSIeeygygivpsy
Flexible Loop (DISEMBL)
mlnanssgdgdgypgDWMRTCNTCKAAVSTLYCHTHLAYFCDSCDERVHAYNSMALPHERMWVSAACENGQATFSCNTDAASLRLSCDADKHLANFLAHHHHARVPAPPFSDLFTAPSSTYLPDPMFDTEKEVTAPTIEVDEDEMDSWLLLEPANHDNQMNSGHTYVQELDESFGMEYNSCTKHECQDQNNLQQLQCTHRGDNGSDGVVPVQPFQVKDKEEQQKQQQQQENEYFSRKYEASKAAFinnpsmsqtvpvsgilpKATRADISSSYTKYSQGTNDLFPNFSFFVPLQFSPMNRVAKVLryrekrkarrfekkiryasrkayaearprvkgrfarktemdfevdemfsieeygygivpsy
Low Complexity Region (SEG)
MLNANSSGDGDGYPGDWMRTCNTCKAAVSTLYCHTHLAYFCDSCDERVHAYNSMALPHERMWVSAACENGQATFSCNTDAASLRLSCDADKhlanflahhhharvpappFSDLFTAPSSTYLPDPMFDTEKEVTAPTIEVDEDEMDSWLLLEPANHDNQMNSGHTYVQELDESFGMEYNSCTKHEcqdqnnlqqlqcTHRGDNGSDGVVPVQPFqvkdkeeqqkqqqqqeNEYFSRKYEASKAAFINNPSMSQTVPVSGILPKATRADISSSYTKYSQGTNDLFPNFSFFVPLQFSPMNRVAKVLryrekrkarrfekkirYASRKAYAEARPRVKGRFARKTEMDFEVDEMFSIEEYGYGIVPSY
Disordered region (IsUnstruct)
************YPGDWMRTCNTCKAAVSTLYCHTHLAYFCDSCDERVHAYNSMALPHERMWVSAACENGQATFSCNTDAASLRLSCDAD*********************************************************WLLL**************************Y**********************************************************************************************YTKYSQGTNDLFPNFSFFVPLQFSPMNRVAKVLRYREKRKARRFEKKIRYASRKAYA*******GRFARKTEMDFEVDEMFSIEEYGYGIV***
Disordered Region (DISOPRED)
******************RTCNTCKAAVSTLYCHTHLAYFCDSCDERVHAYNSMALPHERMWVSAACENGQATFSCNTDAASLRLSCDA************HARVPAPPFSDLFTAPSSTYLPDPMFDTEKEVTAPTIEVDEDEMDSWLLLEPANHDNQMNSGHTYVQELDESFGMEYNSCTKHECQDQNNLQQLQCTHRGDNGSDGVVPVQPFQVKDKEEQQK**QQQENEYFSRKYEASK***************SGILPKATRADISSSYTKYSQG***********************************R**KKIRYASRKAYAEARPRVKGRFARKTEM********SIEEYGYGIVPSY
Disordered Region (DISEMBL)
**********DGYPGDWMRTCNTCKAAVSTLYCHTHLAYFCDSCDERVHAYNSMALPHERMWVSAACENGQATFSCNTDAASLRLSCDADKHLANFLAHHHHARVPAPPFSDLFTAPSSTYLPDPMFDTEKEVTAPTIEVDEDEMDSWLLLEPANHDNQMNSGHTYVQELDESFGMEYNSCTKHECQDQNNLQQLQCTHRGDNGSDGVVPVQPFQ*****************YFSRKYEASKAAFINNPSMSQTVPVSGILPKATRADISSSYTKYSQGTNDLFPNFSFFVPLQFSPMNRVAKVLRYREKRKARRFEKKIRYASRKAYAEARPRVKGRFARKTEMDFEVDEMFSIEEYGYGIVPSY
Disordered Region (DISPRO)
***************DWMRTCNTCKAAVSTLYCHTHLAYFCDSCDERVHAYNSMALPHERMWVSAACENGQATFSCNTDAASLRLSCDADKHLANFLAHHHHARVPAPPFSDLFT***************************DEMDSWLLLEP**H*****SGHTYVQELDESFGMEYNSCTKHE****NNLQQLQCTHRGDNGSDGVVPVQP****************************K********************************************************N*VAKVLRYREKRKARRFEKKIRYASRKAYAEARPRVKGRFARKT********M**I*********SY
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
oooooooooooooooooooooooooohhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MLNANSSGDGDGYPGDWMRTCNTCKAAVSTLYCHTHLAYFCDSCDERVHAYNSMALPHERMWVSAACENGQATFSCNTDAASLRLSCDADKHLANFLAHHHHARVPAPPFSDLFTAPSSTYLPDPMFDTEKEVTAPTIEVDEDEMDSWLLLEPANHDNQMNSGHTYVQELDESFGMEYNSCTKHECQDQNNLQQLQCTHRGDNGSDGVVPVQPFQVxxxxxxxxxxxxxxxxxxxxxYEASKAAFINNPSMSQTVPVSGILPKATRADISSSYTKYSQGTNDLFPNFSFFVPLQFSPMNRVAKVLRYREKRKARRFEKKIRYASRKAYAEARPRVKGRFARKTEMDFEVDEMFSIEEYGYGIVPSY
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	366	2.2.26 [Sep-21-2011]
Q96502	347	Zinc finger protein CONST	yes	no	0.893	0.942	0.396	2e-57
O50055	355	Zinc finger protein CONST	no	no	0.907	0.935	0.391	8e-52
Q39057	373	Zinc finger protein CONST	no	no	0.969	0.951	0.369	2e-50
Q9FDX8	395	Zinc finger protein HD1 O	yes	no	0.887	0.822	0.356	1e-42
Q9FHH8	355	Zinc finger protein CONST	no	no	0.844	0.870	0.329	1e-40
Q9SK53	294	Zinc finger protein CONST	no	no	0.710	0.884	0.350	3e-40
Q940T9	362	Zinc finger protein CONST	no	no	0.915	0.925	0.333	2e-39
O82256	332	Zinc finger protein CONST	no	no	0.800	0.882	0.244	7e-16
Q9C9A9	392	Zinc finger protein CONST	no	no	0.122	0.114	0.608	2e-09
Q9SSE5	372	Zinc finger protein CONST	no	no	0.128	0.126	0.574	4e-09

>sp|Q96502|COL2_ARATH Zinc finger protein CONSTANS-LIKE 2 OS=Arabidopsis thaliana GN=COL2 PE=1 SV=1

 Score =  223 bits (567), Expect = 2e-57,   Method: Compositional matrix adjust.
 Identities = 144/363 (39%), Positives = 196/363 (53%), Gaps = 36/363 (9%)

Query: 15  GDWMRTCNTCKAAVSTLYCHTHLAYFCDSCDERVHAYNSMALPHERMWVSAACENGQATF 74
           G W R C+TC++A  T+YC    AY C +CD RVHA N +A  HER+ V  +CE+  A F
Sbjct: 10  GTWARACDTCRSAACTVYCEADSAYLCTTCDARVHAANRVASRHERVRVCQSCESAPAAF 69

Query: 75  SCNTDAASLRLSCDADKHLANFLAHHHHARVPAPPFSDLFTAPSSTYLPDPMFDTEKEVT 134
            C  DAASL  +CDA+ H AN LA  H  RVP  P S    A S + +     D +    
Sbjct: 70  LCKADAASLCTACDAEIHSANPLARRHQ-RVPILPLS----ANSCSSMAPSETDADN--- 121

Query: 135 APTIEVDEDEMDSWLLLEPANHDNQMNSGHTYVQELDESFGMEYNSCTKHECQDQNNLQQ 194
               + D+ E+ SWLL  P  +    N+G          FG+EY     +     N  + 
Sbjct: 122 ----DEDDREVASWLLPNPGKNIGNQNNGFL--------FGVEYLDLVDYSSSMDNQFED 169

Query: 195 LQCTH-RGDNGSDGVVPVQPFQVKDKEEQQKQQQQQENEYFSRKYEASKAAFINNPS--- 250
            Q TH +   G DGVVP+Q      +E     QQ Q+N      Y  S  A  NN S   
Sbjct: 170 NQYTHYQRSFGGDGVVPLQV-----EESTSHLQQSQQNFQLGINYGFSSGAHYNNNSLKD 224

Query: 251 MSQTVPVS----GILPKATRADISSSYTKYSQGTNDLFPNFSFFVPLQFSPMNRVAKVLR 306
           ++ +  VS     ++P++T +DI+  + + ++ T D        V  Q +PM R A+VLR
Sbjct: 225 LNHSASVSSMDISVVPESTASDITVQHPRTTKETIDQLSGPPTQVVQQLTPMEREARVLR 284

Query: 307 YREKRKARRFEKKIRYASRKAYAEARPRVKGRFARKTEMDFEVDEMFS---IEEYGYGIV 363
           YREK+K R+F+K IRYASRKAYAE RPR+KGRFA++ E + E +E+FS   + E GYGIV
Sbjct: 285 YREKKKTRKFDKTIRYASRKAYAEIRPRIKGRFAKRIETEAEAEEIFSTSLMSETGYGIV 344

Query: 364 PSY 366
           PS+
Sbjct: 345 PSF 347

Putative transcription factor. Does not affect flowering time.
Arabidopsis thaliana (taxid: 3702)

>sp|O50055|COL1_ARATH Zinc finger protein CONSTANS-LIKE 1 OS=Arabidopsis thaliana GN=COL1 PE=1 SV=1

 Score =  204 bits (519), Expect = 8e-52,   Method: Compositional matrix adjust.
 Identities = 145/370 (39%), Positives = 199/370 (53%), Gaps = 38/370 (10%)

Query: 15  GDWMRTCNTCKAAVSTLYCHTHLAYFCDSCDERVHAYNSMALPHERMWVSAACENGQATF 74
            +W + C+TC++A  T+YC    AY C SCD +VHA N +A  HER+ V  +CE   A F
Sbjct: 6   SNWAQACDTCRSAACTVYCRADSAYLCSSCDAQVHAANRLASRHERVRVCQSCERAPAAF 65

Query: 75  SCNTDAASLRLSCDADKHLANFLAHHHHARVPAPPFSDLFTAPSSTYLPDPMFDTEKEVT 134
            C  DAASL  +CD++ H AN LA  H  RVP  P S+   + ++T         E  VT
Sbjct: 66  FCKADAASLCTTCDSEIHSANPLARRHQ-RVPILPISEYSYSSTATN-----HSCETTVT 119

Query: 135 APTIEV---------DEDEMDSWLLLEPANHDNQMNSGHTYVQELDESFGMEYNSCTKHE 185
            P   +         DE E  SWLL  P +  N  N+    +   DE   +   S +  +
Sbjct: 120 DPENRLVLGQEEEDEDEAEAASWLL--PNSGKNSGNNNGFSIG--DEFLNLVDYSSSDKQ 175

Query: 186 CQDQNNLQQLQC-THRGDNGSDGVVPVQPFQVKDKEEQQKQQQQQENEYFSRKYEASKAA 244
             DQ+N  QL C   +   G DGVVP+Q       E  +   Q+Q+N   S    +  A 
Sbjct: 176 FTDQSNQYQLDCNVPQRSYGEDGVVPLQ------IEVSKGMYQEQQNFQLSINCGSWGAL 229

Query: 245 FINNPSMSQTVPVS----GILPKATRADISSSYTKYSQGTNDLFPNFSFFVPLQ-FSPMN 299
             +N S+S  V VS    G++P++T +D + S  +  +   D  P    + P Q  SP +
Sbjct: 230 RSSNGSLSHMVNVSSMDLGVVPESTTSDATVSNPRSPKAVTDQPP----YPPAQMLSPRD 285

Query: 300 RVAKVLRYREKRKARRFEKKIRYASRKAYAEARPRVKGRFARKTEMDFEVDEMFSIE--- 356
           R A+VLRYREK+K R+FEK IRYASRKAYAE RPR+KGRFA+K ++D E ++ FS     
Sbjct: 286 REARVLRYREKKKMRKFEKTIRYASRKAYAEKRPRIKGRFAKKKDVDEEANQAFSTMITF 345

Query: 357 EYGYGIVPSY 366
           + GYGIVPS+
Sbjct: 346 DTGYGIVPSF 355

Putative transcription factor that may be involved in the light input to the circadian clock but does not affect flowering time.

Arabidopsis thaliana (taxid: 3702)

>sp|Q39057|CONS_ARATH Zinc finger protein CONSTANS OS=Arabidopsis thaliana GN=CO PE=1 SV=1

 Score =  200 bits (508), Expect = 2e-50,   Method: Compositional matrix adjust.
 Identities = 142/384 (36%), Positives = 209/384 (54%), Gaps = 29/384 (7%)

Query: 1   MLNANSSGDGDGYPGDWMRTCNTCKAAVSTLYCHTHLAYFCDSCDERVHAYNSMALPHER 60
           ML   S+  G G   +  R C+TC++   T+YCH   AY C SCD +VH+ N +A  H+R
Sbjct: 1   MLKQESNDIGSG-ENNRARPCDTCRSNACTVYCHADSAYLCMSCDAQVHSANRVASRHKR 59

Query: 61  MWVSAACENGQATFSCNTDAASLRLSCDADKHLANFLAHHHHARVPAPPFS-DLFTAPSS 119
           + V  +CE   A F C  D ASL  +CD++ H AN LA  H  RVP  P S + F++ ++
Sbjct: 60  VRVCESCERAPAAFLCEADDASLCTACDSEVHSANPLARRHQ-RVPILPISGNSFSSMTT 118

Query: 120 TY--LPDPMFDTEKEVTAPTIEVDEDEMD-----SWLLLEPANHDNQMNSGHTYVQELDE 172
           T+      M D EK +     E +E + D     SWL     N D   N+ +  +   DE
Sbjct: 119 THHQSEKTMTDPEKRLVVDQEEGEEGDKDAKEVASWLF---PNSDKNNNNQNNGLLFSDE 175

Query: 173 SFGM-EYNSCTKHECQDQNNLQQLQCT-HRGDNGSDGVVPVQPFQVKDKEEQQKQQQQQE 230
              + +YNS   ++   + +  Q  C+  +   G D VVP     +K +E +  Q   Q+
Sbjct: 176 YLNLVDYNSSMDYKFTGEYSQHQQNCSVPQTSYGGDRVVP-----LKLEESRGHQCHNQQ 230

Query: 231 NEYFSRKYEASKAAFINNPSMSQTVPVS----GILPKATRADISSSYTKYSQGTNDLFPN 286
           N  F+ KY +S   + +N S++    +S    G++P++T    ++S+ +  +GT +  P+
Sbjct: 231 NFQFNIKYGSSGTHYNDNGSINHNAYISSMETGVVPESTACVTTASHPRTPKGTVEQQPD 290

Query: 287 --FSFFVPLQFSPMNRVAKVLRYREKRKARRFEKKIRYASRKAYAEARPRVKGRFARKTE 344
                    Q SPM+R A+VLRYREKRK R+FEK IRYASRKAYAE RPRV GRFA++ E
Sbjct: 291 PASQMITVTQLSPMDREARVLRYREKRKTRKFEKTIRYASRKAYAEIRPRVNGRFAKR-E 349

Query: 345 MDFEVDEMFSIEEY--GYGIVPSY 366
           ++ E     ++  Y  GYGIVPS+
Sbjct: 350 IEAEEQGFNTMLMYNTGYGIVPSF 373

Putative transcription factor that acts in the long day flowering pathway and may mediate between the circadian clock and the control of flowering. Plays a role in the regulation of flowering time by acting on 'SUPPRESSOR OF OVEREXPRESSION OF CO1', 'TERMINAL FLOWER 1' and 'FLOWERING LOCUS T'. Also regulates P5CS2 and ACS10 (involved in proline and ethylene biosynthesis, respectively).

Arabidopsis thaliana (taxid: 3702)

>sp|Q9FDX8|HD1_ORYSJ Zinc finger protein HD1 OS=Oryza sativa subsp. japonica GN=HD1 PE=2 SV=1

 Score =  174 bits (440), Expect = 1e-42,   Method: Compositional matrix adjust.
 Identities = 139/390 (35%), Positives = 195/390 (50%), Gaps = 65/390 (16%)

Query: 17  WMRTCNTCKAAVSTLYCHTHLAYFCDSCDERVHAYNSMALPHERMWVSAACENGQATFSC 76
           W R C+ C+AA S +YC    AY C SCD RVHA N +A  HER+ V  ACE   A  +C
Sbjct: 31  WARPCDGCRAAPSVVYCRADAAYLCASCDARVHAANRVASRHERVRVCEACERAPAALAC 90

Query: 77  NTDAASLRLSCDADKHLANFLAHHHHARVPAPPFSDLFTAPSSTYLPDPMFDTEKEVTAP 136
             DAA+L ++CD   H AN          P P      T P+++ L       E  V   
Sbjct: 91  RADAAALCVACDVQVHSAN----------PLPAI----TIPATSVL------AEAVVATA 130

Query: 137 TIEVDEDE-MDSWLLLEPANHDNQMNSGHT-----------------YVQELDESFGM-E 177
           T+  D+DE +DSWLLL   + +N  N+ +                  Y  E+DE F +  
Sbjct: 131 TVLGDKDEEVDSWLLLSKDSDNNNNNNNNNDNDNNDNNNSNSSNNGMYFGEVDEYFDLVG 190

Query: 178 YNSCTKHECQDQNNLQQLQCTHRG----------------DNGSDGVVPVQPFQVKDKEE 221
           YNS   ++ + +NN  +    H                    GS+ VVP Q   +    E
Sbjct: 191 YNS--YYDNRIENNQDRQYGMHEQQEQQQQQQEMQKEFAEKEGSECVVPSQ---ITMLSE 245

Query: 222 QQKQQQQQENEYFSRKYEASKAAFINNPSMSQTVPV--SGILPKATRADISSSYTKYSQG 279
           QQ           +    A  +A+ ++ S S +     +GI+P +T  D+ +S      G
Sbjct: 246 QQHSGYGVVGADQAASMTAGVSAYTDSISNSISFSSMEAGIVPDSTVIDMPNSRILTPAG 305

Query: 280 TNDLFPNFSFFVPLQFSPMNRVAKVLRYREKRKARRFEKKIRYASRKAYAEARPRVKGRF 339
             +LF   S  + L FS M+R A+VLRYREK+KAR+FEK IRY +RKAYAEARPR+KGRF
Sbjct: 306 AINLFSGPSLQMSLHFSSMDREARVLRYREKKKARKFEKTIRYETRKAYAEARPRIKGRF 365

Query: 340 ARKTEMDFEVDEMFS---IEEYGYGIVPSY 366
           A+++++  EVD+MFS   + +  YG VP +
Sbjct: 366 AKRSDVQIEVDQMFSTAALSDGSYGTVPWF 395

Probable transcription factor involved in the regulation of flower development. Required for the promotion of flowering under short day (SD) conditions and the suppression of flowering under long day (LD) conditions. Regulates positively the floral activator HEADING DATE 3a (HD3A) under SD and negatively under LD conditions.

Oryza sativa subsp. japonica (taxid: 39947)

>sp|Q9FHH8|COL5_ARATH Zinc finger protein CONSTANS-LIKE 5 OS=Arabidopsis thaliana GN=COL5 PE=2 SV=2

 Score =  167 bits (422), Expect = 1e-40,   Method: Compositional matrix adjust.
 Identities = 127/386 (32%), Positives = 177/386 (45%), Gaps = 77/386 (19%)

Query: 15  GDW---MRTCNTCKAAVSTLYCHTHLAYFCDSCDERVHAYNSMALPHERMWVSAACENGQ 71
           G W    R+C+ CK+  + ++C    A+ C +CD R+H++      HER+WV   CE   
Sbjct: 13  GGWGAAARSCDACKSVTAAVFCRVDSAFLCIACDTRIHSFTR----HERVWVCEVCEQAP 68

Query: 72  ATFSCNTDAASLRLSCDADKHLANFLAHHHHARVPAPPFSDLFTAPSSTYLPDPMF---- 127
           A  +C  DAA+L +SCDAD H AN LA  H  RVP   F D      +       F    
Sbjct: 69  AAVTCKADAAALCVSCDADIHSANPLASRHE-RVPVETFFDSAETAVAKISASSTFGILG 127

Query: 128 -DTEKEVTAPTIEVDEDEMDSWLLL----EPA----NHDNQMNSGHTYVQELDESFGMEY 178
             T  ++TA  +  D+  +  WLL     EPA      +N   S      + D     E+
Sbjct: 128 SSTTVDLTAVPVMADDLGLCPWLLPNDFNEPAKIEIGTENMKGSSDFMFSDFDRLIDFEF 187

Query: 179 NSCTKHECQDQNNLQQLQCTHRGDNGSDGVVPVQPFQVKDKEEQQKQQQQQENEYFSRKY 238
            +   H              H+ + G D +VPVQ        + +       +  F   +
Sbjct: 188 PNSFNH--------------HQNNAGGDSLVPVQ-------TKTEPLPLTNNDHCFDIDF 226

Query: 239 EASKAAFINNPSMSQTVPVS------GILP------KATRADISSSYTKYSQGTNDLFPN 286
             SK +    PS S +  VS      G++P         R+ I+SS T            
Sbjct: 227 CRSKLSAFTYPSQSVSHSVSTSSIEYGVVPDGNTNNSVNRSTITSSTTGGDH-------- 278

Query: 287 FSFFVPLQFSPMNRVAKVLRYREKRKARRFEKKIRYASRKAYAEARPRVKGRFARKTEMD 346
                  Q S M+R A+VLRYREKRK R+FEK IRYASRKAYAE+RPR+KGRFA++TE  
Sbjct: 279 -------QASSMDREARVLRYREKRKNRKFEKTIRYASRKAYAESRPRIKGRFAKRTET- 330

Query: 347 FEVDEMFSIEEYG------YGIVPSY 366
            E D++F    Y       YG+VP++
Sbjct: 331 -ENDDIFLSHVYASAAHAQYGVVPTF 355

Arabidopsis thaliana (taxid: 3702)

>sp|Q9SK53|COL3_ARATH Zinc finger protein CONSTANS-LIKE 3 OS=Arabidopsis thaliana GN=COL3 PE=1 SV=1

 Score =  166 bits (419), Expect = 3e-40,   Method: Compositional matrix adjust.
 Identities = 117/334 (35%), Positives = 160/334 (47%), Gaps = 74/334 (22%)

Query: 19  RTCNTCKAAVSTLYCHTHLAYFCDSCDERVHAYNSMALPHERMWVSAACENGQATFSCNT 78
           R C++CK+  +TL+C    A+ C  CD ++H  N +A  HER+W+   CE   A  +C  
Sbjct: 6   RLCDSCKSTAATLFCRADAAFLCGDCDGKIHTANKLASRHERVWLCEVCEQAPAHVTCKA 65

Query: 79  DAASLRLSCDADKHLANFLAHHHHARVPAPPFSDLFTAPSSTYLPDPMFDTEKEVTAPTI 138
           DAA+L ++CD D H AN L+  H  RVP  PF D    P+            K  ++   
Sbjct: 66  DAAALCVTCDRDIHSANPLSRRHE-RVPITPFYDA-VGPA------------KSASSSVN 111

Query: 139 EVDEDEMD---SWLLLEPANHDNQMNSGHTYVQELDESFGMEYNSCTKHECQDQNNLQQL 195
            VDED  D   SWLL +       + S   Y                K E   + N    
Sbjct: 112 FVDEDGGDVTASWLLAKEGIEITNLFSDLDY---------------PKIEVTSEEN---- 152

Query: 196 QCTHRGDNGSDGVVPVQPFQVKDKEEQQKQQQQQENEYFSRKYEASKAA-----FINNPS 250
                  +G+DGVVPVQ             +     +YF+    ASK +     FIN   
Sbjct: 153 ------SSGNDGVVPVQ------------NKLFLNEDYFNFDLSASKISQQGFNFINQTV 194

Query: 251 MSQTVPVSGILPKATRADISSSYTKYSQGTNDLFPNFSFFVPLQFSPMNRVAKVLRYREK 310
            ++T+ V  ++P+        S    ++ TN   P       +Q SP  R A+VLRYREK
Sbjct: 195 STRTIDVP-LVPE--------SGGVTAEMTNTETP------AVQLSPAEREARVLRYREK 239

Query: 311 RKARRFEKKIRYASRKAYAEARPRVKGRFARKTE 344
           RK R+FEK IRYASRKAYAE RPR+KGRFA++T+
Sbjct: 240 RKNRKFEKTIRYASRKAYAEMRPRIKGRFAKRTD 273

Arabidopsis thaliana (taxid: 3702)

>sp|Q940T9|COL4_ARATH Zinc finger protein CONSTANS-LIKE 4 OS=Arabidopsis thaliana GN=COL4 PE=2 SV=2

 Score =  163 bits (412), Expect = 2e-39,   Method: Compositional matrix adjust.
 Identities = 124/372 (33%), Positives = 183/372 (49%), Gaps = 37/372 (9%)

Query: 19  RTCNTCKAAVSTLYCHTHLAYFCDSCDERVHAYNSMALPHERMWVSAACENGQATFSCNT 78
           + C++CK+A + LYC    A+ C SCD +VHA N +A  H R+W+   CE   A  +C  
Sbjct: 4   KLCDSCKSATAALYCRPDAAFLCLSCDSKVHAANKLASRHARVWMCEVCEQAPAHVTCKA 63

Query: 79  DAASLRLSCDADKHLANFLAHHHHARVPAPPFSDLFTAPSST------YLPDPMF-DTEK 131
           DAA+L ++CD D H AN LA  H  RVP  PF D  ++  S       +L D  F D + 
Sbjct: 64  DAAALCVTCDRDIHSANPLARRHE-RVPVTPFYDSVSSDGSVKHTAVNFLDDCYFSDIDG 122

Query: 132 EVTAPTIEVDEDEMDSWLLLEPANHDNQMNSGHTYVQELDESFG--MEYNSCTKHECQD- 188
             +    E +E+E  SWLLL          +G   V   +E  G   E N+  ++   D 
Sbjct: 123 NGSR---EEEEEEAASWLLLPNPKTTTTATAGIVAVTSAEEVPGDSPEMNTGQQYLFSDP 179

Query: 189 --------QNNLQQLQCTHRGDNGSDGVVPVQPFQVKDKEEQQKQQQQ-----QENEYFS 235
                    N   +++   +  +G+DGVVPV+   V+     +   +       +   + 
Sbjct: 180 DPYLDLDYGNVDPKVESLEQNSSGTDGVVPVENRTVRIPTVNENCFEMDFTGGSKGFTYG 239

Query: 236 RKYEASKAAFINNPSMSQTVPVSGILPKATRADISSSYTKYSQGTNDLFPNFSFFVPLQF 295
             Y     +  ++      VP  G +     AD+S  Y   +    D  P     VPL  
Sbjct: 240 GGYNCISHSVSSSSMEVGVVPDGGSV-----ADVSYPYGGPATSGAD--PGTQRAVPL-- 290

Query: 296 SPMNRVAKVLRYREKRKARRFEKKIRYASRKAYAEARPRVKGRFARKTEMDFEVDEMFSI 355
           +   R A+V+RYREKRK R+FEK IRYASRKAYAE RPR+KGRFA++T+ +   D +   
Sbjct: 291 TSAEREARVMRYREKRKNRKFEKTIRYASRKAYAEMRPRIKGRFAKRTDTNESNDVVGHG 350

Query: 356 EEY-GYGIVPSY 366
             + G+G+VP++
Sbjct: 351 GIFSGFGLVPTF 362

Arabidopsis thaliana (taxid: 3702)

>sp|O82256|COL13_ARATH Zinc finger protein CONSTANS-LIKE 13 OS=Arabidopsis thaliana GN=COL13 PE=2 SV=1

 Score = 85.1 bits (209), Expect = 7e-16,   Method: Compositional matrix adjust.
 Identities = 85/348 (24%), Positives = 147/348 (42%), Gaps = 55/348 (15%)

Query: 19  RTCNTCKAAVSTLYCHTHLAYFCDSCDERVHAYNSMALPHERMWVSAACENGQATFSCNT 78
           R C+ C ++V+ +YC    A  C +CD++VH  N +   H R  +  +C    ++  C T
Sbjct: 11  RLCDYCDSSVALVYCKADSAKLCLACDKQVHVANQLFAKHFRSLLCDSCNESPSSLFCET 70

Query: 79  DAASLRLSCDADKHLANFLAHHHHARVPAPPFSDLFTAPSSTYLPDPMFDTEKEVTAPTI 138
           + + L  +CD   H A   +   H+R P   F+   + P              E+ A  +
Sbjct: 71  ERSVLCQNCDWQHHTA---SSSLHSRRPFEGFTGCPSVP--------------ELLA-IV 112

Query: 139 EVDEDEMDSWLLLEP---ANHDNQMNSGHTYVQELDESF-----GMEYNSCTKHECQDQN 190
            +D+  +DS LL E     + ++ + SG +       +         + +C K++ +   
Sbjct: 113 GLDDLTLDSGLLWESPEIVSLNDLIVSGGSGTHNFRATDVPPLPKNRHATCGKYKDEMIR 172

Query: 191 NLQQLQCTHRG-----------DNGSDGVVPVQPFQVKDKEEQQKQQQQQENEYF----- 234
            L+ L  +  G           D G   + P   F   + E   K   QQ++E F     
Sbjct: 173 QLRGLSRSEPGCLKFETPDAEIDAGFQFLAP-DLFSTCELESGLKWFDQQDHEDFPYCSL 231

Query: 235 -SRKYEASKAAFINNPSMSQTVPVSGILPKATRADISSSYTKYSQGTNDLFPNFSFFVPL 293
                E+ +     +   S  VPVSG L +     +       ++               
Sbjct: 232 LKNLSESDEKPENVDRESSVMVPVSGCLNRCEEETVMVPVITSTRSMTH----------- 280

Query: 294 QFSPMNRVAKVLRYREKRKARRFEKKIRYASRKAYAEARPRVKGRFAR 341
           + + + R + + RY+EK+K+RR+EK IRY SRK  AE+R R++GRFA+
Sbjct: 281 EINSLERNSALSRYKEKKKSRRYEKHIRYESRKVRAESRTRIRGRFAK 328

Arabidopsis thaliana (taxid: 3702)

>sp|Q9C9A9|COL7_ARATH Zinc finger protein CONSTANS-LIKE 7 OS=Arabidopsis thaliana GN=COL7 PE=2 SV=1

 Score = 63.9 bits (154), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 28/46 (60%), Positives = 35/46 (76%)

Query: 300 RVAKVLRYREKRKARRFEKKIRYASRKAYAEARPRVKGRFARKTEM 345
           R A+VLRY+EKR+ R F KKIRY  RK  AE RPR+KGRF ++T +
Sbjct: 345 REARVLRYKEKRRTRLFSKKIRYEVRKLNAEQRPRIKGRFVKRTSL 390

Arabidopsis thaliana (taxid: 3702)

>sp|Q9SSE5|COL9_ARATH Zinc finger protein CONSTANS-LIKE 9 OS=Arabidopsis thaliana GN=COL9 PE=2 SV=1

 Score = 62.8 bits (151), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 27/47 (57%), Positives = 37/47 (78%)

Query: 298 MNRVAKVLRYREKRKARRFEKKIRYASRKAYAEARPRVKGRFARKTE 344
           + R   V+RY+EK+KAR+F+K++RYASRKA A+ R RVKGRF +  E
Sbjct: 313 VTRNNAVMRYKEKKKARKFDKRVRYASRKARADVRRRVKGRFVKAGE 359

Arabidopsis thaliana (taxid: 3702)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	366
317106660	366	JHL10I11.10 [Jatropha curcas]	0.956	0.956	0.504	9e-87
41323976	422	CONSTANS-like protein CO1 [Populus delto	0.980	0.850	0.469	1e-73
41323978	372	CONSTANS-like protein CO2 [Populus delto	0.975	0.959	0.448	2e-71
224127556	355	predicted protein [Populus trichocarpa]	0.942	0.971	0.466	1e-70
224077570	369	predicted protein [Populus trichocarpa]	0.972	0.964	0.461	1e-69
334847620	365	CONSTANS-like protein 1 [Chenopodium rub	0.934	0.936	0.445	3e-67
387862485	381	CONSTANTS-like protein [Fragaria x anana	0.926	0.889	0.440	4e-67
255584300	378	zinc finger protein, putative [Ricinus c	0.942	0.912	0.433	1e-66
186911828	367	COL1 [Beta vulgaris subsp. vulgaris]	0.934	0.931	0.444	2e-66
210063639	384	CONSTANS [Fragaria x ananassa]	0.953	0.908	0.421	2e-65

>gi|317106660|dbj|BAJ53164.1| JHL10I11.10 [Jatropha curcas]

 Score =  326 bits (836), Expect = 9e-87,   Method: Compositional matrix adjust.
 Identities = 185/367 (50%), Positives = 244/367 (66%), Gaps = 17/367 (4%)

Query: 1   MLNANSSGDGDGYPGDWMRTCNTCKAAVSTLYCHTHLAYFCDSCDERVHAYNSMALPHER 60
           ML  NS  DG  Y  +W R+C+ C AA  TLYCH   AY C++CDE VHA NS+AL H+R
Sbjct: 1   MLKINS--DGYRYLTNWARSCDACCAAPCTLYCHADSAYLCNNCDEYVHAANSLALKHKR 58

Query: 61  MWVSAACENGQATFSCNTDAASLRLSCDADKHLANFLAHHHHARVPAPPFSDLFTAPSST 120
           +WV  ACEN  A F+C  DAA L ++CD + H AN LA  H  RVP  P S L    S+T
Sbjct: 59  VWVCTACENAPAAFTCQPDAAKLCINCDIEIHSANPLAGRH-IRVPITPISGLANTSSTT 117

Query: 121 YLPD---PMFDTEKEVTAPTI--EVDEDEMDSWLLLEPANHDNQMNSGHTYVQELDESFG 175
            L +   P+  TE +  A  I  E++ED+ DSWLLL+  N+DNQ N+G TY++++D+   
Sbjct: 118 CLEESQAPLLHTENDAMANKIVHELEEDQTDSWLLLDLDNNDNQTNTGFTYIEDVDQYLN 177

Query: 176 -MEYNSCTKHECQDQNNLQQLQCTHRGDNGSDGVVPVQPFQVKDKEEQQKQQQQQENEYF 234
            ++YNSCT + CQDQ N QQL   HRGD   D +VPVQ F+ +D++E   QQQQQE  + 
Sbjct: 178 HIKYNSCTNYHCQDQINQQQLSSAHRGDICGDSIVPVQSFEAQDQQEHHHQQQQQETTFI 237

Query: 235 SRKYEASKAAFINNPSMSQTVPVSGILPKA--------TRADISSSYTKYSQGTNDLFPN 286
              Y ASKA+F+N  S SQ +     +P +        T +++ +SY+++S+ T DL PN
Sbjct: 238 DSGYGASKASFVNTTSNSQKLHFQNQVPLSFTNAGYLLTSSNVPNSYSRFSKRTGDLLPN 297

Query: 287 FSFFVPLQFSPMNRVAKVLRYREKRKARRFEKKIRYASRKAYAEARPRVKGRFARKTEMD 346
            S  VP+QF+PMNR AKVLRYREKR+AR+FEK+IRY +RKA AE RPRVKGRFARK +M+
Sbjct: 298 PSLLVPVQFTPMNREAKVLRYREKRRARKFEKQIRYVTRKANAENRPRVKGRFARKKDME 357

Query: 347 FEVDEMF 353
            E+D+MF
Sbjct: 358 LELDQMF 364

Source: Jatropha curcas

Species: Jatropha curcas

Genus: Jatropha

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|41323976|gb|AAS00054.1| CONSTANS-like protein CO1 [Populus deltoides]

 Score =  283 bits (724), Expect = 1e-73,   Method: Compositional matrix adjust.
 Identities = 178/379 (46%), Positives = 226/379 (59%), Gaps = 20/379 (5%)

Query: 1   MLNANSSGDGDGYPGDWMRTCNTCKAAVSTLYCHTHLAYFCDSCDERVHAYNSMALPHER 60
           ML   S G G G   +W R C+TC+AA  T+YC    AY C  CD RVHA N +A  HER
Sbjct: 51  MLKEESGGSG-GVVNNWARVCDTCRAAACTVYCRADSAYLCAGCDARVHAANRVASRHER 109

Query: 61  MWVSAACENGQATFSCNTDAASLRLSCDADKHLANFLAHHHHARVPAPPFSDLF----TA 116
           + V  ACE   A   C  DAASL  +CDAD H AN LA  H  RVP  P S         
Sbjct: 110 VRVCEACERAPAALLCKADAASLCTACDADIHSANPLARRHQ-RVPILPISGYLYGTQVG 168

Query: 117 PSSTYLPDPMFDTEKEVTAPTIEVDEDEMDSWLLLEPANHDNQMNS-GHTYVQELDESFG 175
           P++    D     E E T    E DEDE  SWLLL PA + N  N+ G  +  E+DE   
Sbjct: 169 PAAGETEDQFMTQEGEETIG--EEDEDEAASWLLLNPAKNSNNQNNNGFLFGGEVDEYLD 226

Query: 176 M-EYNSCTKHECQDQNNLQQLQCTHRGDNGSDGVVPVQPFQVKDKEEQQKQQQQQENEYF 234
           + EYNSC +++  DQ N Q      +   G D VVP+Q  + KD   QQ+QQQQ  N   
Sbjct: 227 IVEYNSCAENQYSDQYNQQHYSVPPK-SCGGDSVVPIQYGEGKD--HQQQQQQQYHNFQL 283

Query: 235 SRKYEASKAAFINNPSMSQTVPVS----GILPKATRADISSSYTKYSQGTNDLFPNFSFF 290
             +YE +KAA+  + S+SQ V +S    G++P++  ++IS S+   S+GT DLF +    
Sbjct: 284 GLEYEPAKAAYSYDGSVSQGVSMSSMDVGVVPESAMSEISISHQSASRGTIDLFSSPPIQ 343

Query: 291 VPLQFSPMNRVAKVLRYREKRKARRFEKKIRYASRKAYAEARPRVKGRFARKTEMDFEVD 350
           +P Q SPM R A+VLRYREK+KAR+FEK IRYASRKAYAE RPR+KGRFA++T++D EVD
Sbjct: 344 MPSQLSPMEREARVLRYREKKKARKFEKTIRYASRKAYAETRPRIKGRFAKRTDVDVEVD 403

Query: 351 EMFS---IEEYGYGIVPSY 366
           +MFS   + E  YGIVPS+
Sbjct: 404 QMFSSTLMAETAYGIVPSF 422

Source: Populus deltoides

Species: Populus deltoides

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|41323978|gb|AAS00055.1| CONSTANS-like protein CO2 [Populus deltoides]

 Score =  275 bits (703), Expect = 2e-71,   Method: Compositional matrix adjust.
 Identities = 171/381 (44%), Positives = 226/381 (59%), Gaps = 24/381 (6%)

Query: 1   MLNANSSGDGDGYPGDWMRTCNTCKAAVSTLYCHTHLAYFCDSCDERVHAYNSMALPHER 60
           ML   SSG G G   +  R C+TC+AA  T+YC    AY C  CD RVHA N +A  HER
Sbjct: 1   MLKQESSGSGGG--DNRARLCDTCRAAACTVYCRADSAYLCAGCDARVHAANRVASRHER 58

Query: 61  MWVSAACENGQATFSCNTDAASLRLSCDADKHLANFLAHHHHARVPAPPFSDLF----TA 116
           +WV  +CE   A   C  DAASL  +CDAD H AN LA  H  RVP  P S         
Sbjct: 59  VWVCESCERAPAALLCKADAASLCTACDADIHSANPLARRHQ-RVPILPISGCLHGSQVG 117

Query: 117 PSSTYLPDPMFDTEKEVTAPTIEVDEDEMD--SWLLLEPA-NHDNQMNSGHTYVQELDES 173
           P++    D  F T++     + E +E+E +  SWLLL P  N  NQ N+G  +  E+DE 
Sbjct: 118 PAAGETED-RFTTQEGEETISEEEEEEEDEAASWLLLNPVKNSKNQNNNGFLFEGEVDEY 176

Query: 174 FGM-EYNSCTKHECQDQNNLQQLQCTHRGDNGSDGVVPVQPFQVKDKEEQQKQQQQQENE 232
             + EYNSCT+++C DQ N QQ  C      G D VVP+Q  + KD     +QQ+Q  N 
Sbjct: 177 LDLVEYNSCTENQCSDQYN-QQHYCVPPKSYGGDRVVPIQYGEGKD----HQQQRQYHNF 231

Query: 233 YFSRKYEASKAAFINNPSMSQTVPVS----GILPKATRADISSSYTKYSQGTNDLFPNFS 288
               +YE SKAA+  N  +SQ+V +S    G++P++T ++IS S  +  + T +LF + +
Sbjct: 232 QLGLEYEPSKAAYSYNGLISQSVSMSSMDVGVVPESTMSEISISQHRTPKRTIELFSSTA 291

Query: 289 FFVPLQFSPMNRVAKVLRYREKRKARRFEKKIRYASRKAYAEARPRVKGRFARKTEMDFE 348
             +P Q SPM+R A+VLRYREK+K R+FEK IRYASRKAYAE RPRVKGRFA++ +++ E
Sbjct: 292 IQMPSQLSPMDREARVLRYREKKKTRKFEKTIRYASRKAYAETRPRVKGRFAKRKDVEVE 351

Query: 349 VDEMFS---IEEYGYGIVPSY 366
            D  FS   +   G GIVPS+
Sbjct: 352 DDRTFSSTLMAGTGCGIVPSF 372

Source: Populus deltoides

Species: Populus deltoides

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224127556|ref|XP_002329307.1| predicted protein [Populus trichocarpa] gi|222870761|gb|EEF07892.1| predicted protein [Populus trichocarpa]

 Score =  273 bits (698), Expect = 1e-70,   Method: Compositional matrix adjust.
 Identities = 168/360 (46%), Positives = 216/360 (60%), Gaps = 15/360 (4%)

Query: 16  DWMRTCNTCKAAVSTLYCHTHLAYFCDSCDERVHAYNSMALPHERMWVSAACENGQATFS 75
           +W R C+TC+AA  T+YC    AY C  CD RVHA N +A  HER+ V  ACE   A   
Sbjct: 2   NWARVCDTCRAAACTVYCRADSAYLCAGCDARVHAANRVASRHERVRVCEACERAPAALL 61

Query: 76  CNTDAASLRLSCDADKHLANFLAHHHHARVPAPPFSDLF----TAPSSTYLPDPMFDTEK 131
           C  DAASL  +CDAD H AN LA  H  RVP  P S         P++    D     E 
Sbjct: 62  CKADAASLCTACDADIHSANPLARRHQ-RVPILPISGYLYGTQVGPAAGETEDQFMTQEG 120

Query: 132 EVTAPTIEVDEDEMDSWLLLEPANHDNQMNS-GHTYVQELDESFGM-EYNSCTKHECQDQ 189
           E T    E DEDE  SWLLL PA + N  N+ G  +  E+DE   + EYNSC +++  DQ
Sbjct: 121 EET--IGEEDEDEAASWLLLNPAKNSNNQNNNGFLFGGEVDEYLDIVEYNSCAENQYSDQ 178

Query: 190 NNLQQLQCTHRGDNGSDGVVPVQPFQVKDKEEQQKQQQQQENEYFSRKYEASKAAFINNP 249
            N Q      +   G D VVP+Q  + KD   QQ+QQQQ  N     +YE +KAA+  + 
Sbjct: 179 YNQQHYSVPPK-SCGGDSVVPIQYGEGKDH--QQQQQQQHHNFQLGLEYEPAKAAYSYDG 235

Query: 250 SMSQTVPVSGILPKATRADISSSYTKYSQGTNDLFPNFSFFVPLQFSPMNRVAKVLRYRE 309
           S+S +    G++P++  ++IS S+    +GT DLF +    +P Q SPM R A+VLRYRE
Sbjct: 236 SVSMSSMDVGVVPESAMSEISISHQSAPRGTIDLFSSPPIQMPSQLSPMEREARVLRYRE 295

Query: 310 KRKARRFEKKIRYASRKAYAEARPRVKGRFARKTEMDFEVDEMFS---IEEYGYGIVPSY 366
           K+KAR+FEK IRYASRKAYAE RPR+KGRFA++T++D EVD+MFS   + E  YGIVPS+
Sbjct: 296 KKKARKFEKTIRYASRKAYAETRPRIKGRFAKRTDVDVEVDQMFSSTLMAETAYGIVPSF 355

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224077570|ref|XP_002305307.1| predicted protein [Populus trichocarpa] gi|222848271|gb|EEE85818.1| predicted protein [Populus trichocarpa]

 Score =  269 bits (688), Expect = 1e-69,   Method: Compositional matrix adjust.
 Identities = 175/379 (46%), Positives = 226/379 (59%), Gaps = 23/379 (6%)

Query: 1   MLNANSSGDGDGYPGDWMRTCNTCKAAVSTLYCHTHLAYFCDSCDERVHAYNSMALPHER 60
           ML   SSG G G   +  R C+TC+AA  T+YC    AY C  CD RVHA N +A  HER
Sbjct: 1   MLKQESSGGGGG--DNRARVCDTCRAAPCTVYCRADSAYLCAGCDARVHAANRVASRHER 58

Query: 61  MWVSAACENGQATFSCNTDAASLRLSCDADKHLANFLAHHHHARVPAPPFSDLF----TA 116
           + V  ACE   A   C  DAASL  +CDAD H AN LA  H  RVP  P S         
Sbjct: 59  VSVCEACERAPAALLCKADAASLCTACDADIHSANPLARRHQ-RVPILPISGCLHGSPVG 117

Query: 117 PSSTYLPDPMFDTEKEVTAPTIEVDEDEMDSWLLLEPA-NHDNQMNSGHTYVQELDESFG 175
           P++    D    T +E      E +EDE  SWLLL P  N  NQ N+G  +  E+DE   
Sbjct: 118 PAAGETEDRF--TTQEGEETISEEEEDEAASWLLLNPVKNSKNQNNNGFLFGGEVDEYLD 175

Query: 176 M-EYNSCTKHECQDQNNLQQLQCTHRGDNGSDGVVPVQPFQVKDKEEQQKQQQQQENEYF 234
           + EYNSCT+++C DQ N QQ  C      G D  VP+Q  + KD     +QQ+Q  N   
Sbjct: 176 LVEYNSCTENQCSDQYN-QQHYCVPPKSYGGDRAVPIQYGEGKD----HQQQRQYHNFQL 230

Query: 235 SRKYEASKAAFINNPSMSQTVPVS----GILPKATRADISSSYTKYSQGTNDLFPNFSFF 290
             +YE SKAA   N S+SQ+V +S    G++P++T ++IS S  +  +GT +LF + +  
Sbjct: 231 GLEYEPSKAACSYNGSISQSVSMSSMDVGVVPESTMSEISISQHRPPKGTMELFSSTAIQ 290

Query: 291 VPLQFSPMNRVAKVLRYREKRKARRFEKKIRYASRKAYAEARPRVKGRFARKTEMDFEVD 350
           +P Q SPM+R A+VLRYREK+K R+FEK IRYASRKAYAE RPR+KGRFA++ +++ E D
Sbjct: 291 MPSQLSPMDREARVLRYREKKKTRKFEKTIRYASRKAYAETRPRIKGRFAKRKDVEVEDD 350

Query: 351 EMFS---IEEYGYGIVPSY 366
           +MFS   + E GYGIVPS+
Sbjct: 351 QMFSSTLMAETGYGIVPSF 369

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|334847620|gb|ACB36911.2| CONSTANS-like protein 1 [Chenopodium rubrum]

 Score =  261 bits (667), Expect = 3e-67,   Method: Compositional matrix adjust.
 Identities = 161/361 (44%), Positives = 218/361 (60%), Gaps = 19/361 (5%)

Query: 17  WMRTCNTCKAAVSTLYCHTHLAYFCDSCDERVHAYNSMALPHERMWVSAACENGQATFSC 76
           W R C+TC++A  T+YC    A+ C SCD R+HA N MA  HER+WV  ACE   A F C
Sbjct: 13  WARVCDTCRSAPCTVYCKEDSAFLCTSCDARIHAVNQMASRHERVWVCEACEREPAAFLC 72

Query: 77  NTDAASLRLSCDADKHLANFLAHHHHARVPAPPFSDLFTAPSSTYLPDPMFDT-EKEVTA 135
             DAASL  +CDAD H AN LA  HH RVP  P   ++         D   D  +++   
Sbjct: 73  KADAASLCATCDADIHSANPLARRHH-RVPIMPVGCVYGPSDGRMSEDGFLDLPDRDDQT 131

Query: 136 PTIEVDEDEMDSWLLLEPA-NHDNQMNSGH-TYVQELDESFGM-EYNSCTKHECQDQNNL 192
              E DEDE  SWLLL P  N +NQ  +G  T   E+DE   + EYNS   ++  +Q N 
Sbjct: 132 TDHEGDEDEAASWLLLNPGKNSNNQTTNGFLTGGGEVDEYLDLFEYNSGADNQFCEQYNQ 191

Query: 193 QQLQCTHRGDNGSDGVVPVQPFQVKDKEEQQKQQQQQENEYFSRKYEASKAAFINNPSMS 252
           QQ       + G D VVPVQ  +VKD       Q Q +N  F  + E +K+ +  N S+S
Sbjct: 192 QQEFSVPEKNCGGDSVVPVQCREVKD------HQIQYQNFLFGMECE-TKSEYTYNTSIS 244

Query: 253 QTVPVSGIL----PKATRADISSSYTKYSQGTNDLFPNFSFFVPLQFSPMNRVAKVLRYR 308
            +V VS +     P++T +D+S S+++  +GT DLF +    VP Q SP++R A+V+RYR
Sbjct: 245 HSVSVSSLDVGVVPESTMSDMSVSHSRPPKGTIDLFSSTPMQVPTQLSPLDREARVMRYR 304

Query: 309 EKRKARRFEKKIRYASRKAYAEARPRVKGRFARKTEMDFEVDEMFS---IEEYGYGIVPS 365
           EK+K R+FEK IRYASRKAYAE RPR+KGRFA++T+++ E+D+MF+   + + GYGIVPS
Sbjct: 305 EKKKNRKFEKTIRYASRKAYAETRPRIKGRFAKRTDVEAEMDQMFTNSLMSDGGYGIVPS 364

Query: 366 Y 366
           +
Sbjct: 365 F 365

Source: Chenopodium rubrum

Species: Oxybasis rubra

Genus: Oxybasis

Family: Amaranthaceae

Order: Caryophyllales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|387862485|gb|AFK08985.1| CONSTANTS-like protein [Fragaria x ananassa]

 Score =  261 bits (667), Expect = 4e-67,   Method: Compositional matrix adjust.
 Identities = 166/377 (44%), Positives = 217/377 (57%), Gaps = 38/377 (10%)

Query: 17  WMRTCNTCKAAVSTLYCHTHLAYFCDSCDERVHAYNSMALPHERMWVSAACENGQATFSC 76
           W R C+TC +A  T+YC    AY C  CD  +HA N +A  HER+WV  ACE   A F C
Sbjct: 16  WARVCDTCCSAPCTVYCRADSAYLCSGCDTTIHAANRVASRHERVWVCEACERAPAAFLC 75

Query: 77  NTDAASLRLSCDADKHLANFLAHHHHARVPAPPFSD----LFTAPSSTYLPDPMFDTEKE 132
             DAASL  +CDAD H AN LA  H  RVP  P S     + +AP+ T   +  F +++ 
Sbjct: 76  KADAASLCTACDADIHSANPLARRHQ-RVPILPISGSQIMVGSAPADT--TEDGFLSQEG 132

Query: 133 VTAPTIEVDEDEMDSWLLLEPANHDNQMNS------GHTYVQELDESFG-MEYNSCTKHE 185
                 E DEDE  SWLLL P  + N  N+      G  +  E+DE    +EYNS     
Sbjct: 133 DEEAMDEEDEDEAASWLLLNPVKNSNNHNNPNNNNNGFFFGVEVDEYLDFVEYNS----- 187

Query: 186 CQDQNNLQQLQCT---------HRGDNGSDGVVPVQPFQVKDKEEQQKQQQQQENEYFSR 236
             DQN L     T         H+   G D VVPVQ    + K  Q + QQ+        
Sbjct: 188 -SDQNQLGGTTATNDQHNYGVPHKISYGGDSVVPVQ--YGEGKVTQMQMQQKHNFHQLGM 244

Query: 237 KYEASKAAFINNPSMSQTVPVS----GILPKATRADISSSYTKYSQGTNDLFPNFSFFVP 292
           +YE+SKAA+  + S+S TV VS    G++P +T +++S  + +  +GT DLF   +  +P
Sbjct: 245 EYESSKAAYGYDGSISHTVSVSSMDVGVVPDSTMSEMSVCHPRTPKGTIDLFNGPTIQMP 304

Query: 293 LQFSPMNRVAKVLRYREKRKARRFEKKIRYASRKAYAEARPRVKGRFARKTEMDFEVDEM 352
            Q SPM+R A+VLRYREK+K R+FEK IRYASRKAYAE RPR+KGRFA++T+++ EVD+M
Sbjct: 305 TQLSPMDREARVLRYREKKKTRKFEKTIRYASRKAYAETRPRIKGRFAKRTDIEVEVDQM 364

Query: 353 FS---IEEYGYGIVPSY 366
           FS   + E GYGIVPSY
Sbjct: 365 FSTSLMRETGYGIVPSY 381

Source: Fragaria x ananassa

Species: Fragaria x ananassa

Genus: Fragaria

Family: Rosaceae

Order: Rosales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255584300|ref|XP_002532886.1| zinc finger protein, putative [Ricinus communis] gi|223527346|gb|EEF29491.1| zinc finger protein, putative [Ricinus communis]

 Score =  259 bits (663), Expect = 1e-66,   Method: Compositional matrix adjust.
 Identities = 160/369 (43%), Positives = 214/369 (57%), Gaps = 24/369 (6%)

Query: 17  WMRTCNTCKAAVSTLYCHTHLAYFCDSCDERVHAYNSMALPHERMWVSAACENGQATFSC 76
           W R C+TC+AA  T+YC    AY C +CD R+HA N +A  H R+WV  ACE   A F C
Sbjct: 15  WARVCDTCRAAACTVYCKADSAYLCATCDARIHAANRVASRHGRVWVCEACERAPAAFLC 74

Query: 77  NTDAASLRLSCDADKHLANFLAHHHHARVPAPPFSDLFTAPSSTYL-------PDPMFDT 129
             DAASL  +CDAD H AN LA  H  RVP  P S     P +  +        + MF T
Sbjct: 75  KADAASLCATCDADIHSANPLARRHQ-RVPIHPISGCLHGPQAGPVGGGGETTTEDMFMT 133

Query: 130 EKEVTAPTIEVDEDEMDSWLLLEPANHDNQMNSGHT---YVQELDESFGM-EYNSCTKHE 185
           E        E +EDE  SWLLL P  + N  N+G     +  E++E   + EYNS +  E
Sbjct: 134 EDGEDG-VGEEEEDEAASWLLLNPVKNGNSQNNGTNGFLFGGEVEEYLDLFEYNSNSCGE 192

Query: 186 CQDQNNLQQLQCT-HRGDNGSDGVVPVQPFQVKDKEEQQKQQQQQENEYFSRKYEASKAA 244
            Q  +N Q    T H+  +  D VVPV+     D   +    QQ  N     ++E+SKAA
Sbjct: 193 NQYADNHQHYSGTVHQKSHEGDSVVPVR---CGDGAGKDHVHQQYHNFQLGLEFESSKAA 249

Query: 245 FINNPSMSQTVPVS----GILPKATRADISSSYTKYSQGTNDLFPNFSFFVPLQFSPMNR 300
           +  N S+S +V +S    G++P +T ++ S S+ +  +GT DLF      +P Q SP +R
Sbjct: 250 YSYNGSISHSVSISPMDVGVVPDSTMSEASISHPRPPKGTIDLFSGPPIQMPSQLSPRDR 309

Query: 301 VAKVLRYREKRKARRFEKKIRYASRKAYAEARPRVKGRFARKTEMDFEVDEMFS---IEE 357
            A+VLRYREK+K R+FEK IRYASRKAYAE RPR+KGRFA++T+++ EVD++FS   + E
Sbjct: 310 EARVLRYREKKKTRKFEKTIRYASRKAYAETRPRIKGRFAKRTDVEVEVDQIFSTALMAE 369

Query: 358 YGYGIVPSY 366
            GYGIVPS+
Sbjct: 370 TGYGIVPSF 378

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|186911828|gb|ACC95129.1| COL1 [Beta vulgaris subsp. vulgaris]

 Score =  258 bits (660), Expect = 2e-66,   Method: Compositional matrix adjust.
 Identities = 161/362 (44%), Positives = 214/362 (59%), Gaps = 20/362 (5%)

Query: 17  WMRTCNTCKAAVSTLYCHTHLAYFCDSCDERVHAYNSMALPHERMWVSAACENGQATFSC 76
           W R C+TC+AA  T+YC    A+ C SCD R+HA N +A  HER+WV  ACE   A F C
Sbjct: 14  WARVCDTCRAAPCTVYCRADSAFLCTSCDARIHAANQVASRHERVWVCEACERAPAAFLC 73

Query: 77  NTDAASLRLSCDADKHLANFLAHHHHARVPAPPFSDLFTAPSSTYLPDPMFDTEKEVTAP 136
             DAASL  +CDA+ H AN LA  H  RVP  P +     P    + +  F T  E    
Sbjct: 74  KADAASLCATCDAEIHSANPLARRHQ-RVPIMPVAGCVYGPQGGRMSEDRFLTLPEGDDH 132

Query: 137 TI--EVDEDEMDSWLLLEPANHDNQMNSGH--TYVQELDESFGM-EYNSCTKHECQDQNN 191
           T   E DEDE  SWLLL P  + N  N+    T   E+DE   + EYNS   ++  +Q N
Sbjct: 133 TTDHEGDEDEAASWLLLNPVKNSNNQNTNGFLTGGGEVDEYLDLLEYNSGADNQLCEQYN 192

Query: 192 LQQLQCTHRGDNGSDGVVPVQPFQVKDKEEQQKQQQQQENEYFSRKYEASKAAFINNPSM 251
            QQ       + G D VVPVQ  + KD       Q Q +N  F  + E +K+ +  N S+
Sbjct: 193 QQQEFKVPEKNCGGDSVVPVQCREAKD------HQIQYQNFLFGMECE-TKSGYTYNTSI 245

Query: 252 SQTVPVSGIL----PKATRADISSSYTKYSQGTNDLFPNFSFFVPLQFSPMNRVAKVLRY 307
           SQ+V VS +     P++  +DIS S+ +  +GT DLF +    VP Q SP++R A+V+RY
Sbjct: 246 SQSVSVSSMDVGVVPESAMSDISMSHPRPPKGTIDLFSSPPMQVPTQLSPLDREARVMRY 305

Query: 308 REKRKARRFEKKIRYASRKAYAEARPRVKGRFARKTEMDFEVDEMFS---IEEYGYGIVP 364
           REK+K R+FEK IRYASRKAYAE RPR+KGRFA++T+++ E+D+MF+   + + GYGIVP
Sbjct: 306 REKKKNRKFEKTIRYASRKAYAETRPRIKGRFAKRTDVEAEMDQMFTNSLMADSGYGIVP 365

Query: 365 SY 366
           SY
Sbjct: 366 SY 367

Source: Beta vulgaris subsp. vulgaris

Species: Beta vulgaris

Genus: Beta

Family: Amaranthaceae

Order: Caryophyllales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|210063639|gb|ACJ06578.1| CONSTANS [Fragaria x ananassa]

 Score =  255 bits (652), Expect = 2e-65,   Method: Compositional matrix adjust.
 Identities = 163/387 (42%), Positives = 214/387 (55%), Gaps = 38/387 (9%)

Query: 9   DGDGYPGDWMRTCNTCKAAVSTLYCHTHLAYFCDSCDERVHAYNSMALPHERMWVSAACE 68
           +G      W R C+TC++A  T+YC    AY C  CD  +HA N +A  HER+ V  ACE
Sbjct: 7   NGAAAANSWARVCDTCRSAPCTVYCRADSAYLCSGCDATIHAANRVASRHERVSVCEACE 66

Query: 69  NGQATFSCNTDAASLRLSCDADKHLANFLAHHHHARVPAPPFSD--LFTAPSSTYLPDPM 126
              A F C  DAASL  +CDAD H AN LA  H  RVP  P S   +    +     +  
Sbjct: 67  RAPAAFLCKADAASLCTACDADIHSANPLARRHQ-RVPILPISGCQIMVGSTPADTTEDG 125

Query: 127 FDTEKEVTAPTIEVDEDEMDSWLLLEPANHDNQMNS----------GHTYVQELDESFGM 176
           F +++       E DEDE  SWLLL P  + N  NS          G  +  E+DE   +
Sbjct: 126 FLSQEGDEEVMDEEDEDEAASWLLLNPVKNSNNHNSNNNNPNNNNNGFLFGVEVDEYLDL 185

Query: 177 -EYNSCTKHECQDQNNLQQLQCT---------HRGDNGSDGVVPVQPFQVKDKEEQQKQQ 226
            EYNS       DQN       T         H+   G D VVPVQ  +   K  Q + Q
Sbjct: 186 VEYNS------SDQNQFSGTTATNDQHNYGVPHKISYGGDSVVPVQYGE--GKVTQMQMQ 237

Query: 227 QQQENEYFSRKYEASKAAFINNPSMSQTVPVS----GILPKATRADISSSYTKYSQGTND 282
           Q+        +YE+SKAA+  + S+S TV VS    G++P +T +++S  + +  +GT D
Sbjct: 238 QKHNFHQLGMEYESSKAAYGYDGSISHTVSVSSMDVGVVPDSTMSEMSVCHPRTPKGTID 297

Query: 283 LFPNFSFFVPLQFSPMNRVAKVLRYREKRKARRFEKKIRYASRKAYAEARPRVKGRFARK 342
           LF   +  +P Q SPM+R A+VLRYREK+K R+FEK IRYASRKAYAE RPR+KGRFA++
Sbjct: 298 LFNGPTIQMPTQLSPMDREARVLRYREKKKTRKFEKTIRYASRKAYAETRPRIKGRFAKR 357

Query: 343 TEMDFEVDEMFS---IEEYGYGIVPSY 366
           T+++ EVD+MFS   + E GYGIVPSY
Sbjct: 358 TDIEVEVDQMFSTSLMGETGYGIVPSY 384

Source: Fragaria x ananassa

Species: Fragaria x ananassa

Genus: Fragaria

Family: Rosaceae

Order: Rosales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	366
TAIR|locus:2074587	347	COL2 "CONSTANS-like 2" [Arabid	0.592	0.625	0.309	9.6e-44
UNIPROTKB|Q9FE92	407	Hd1 "Heading day 1" [Oryza sat	0.401	0.361	0.360	1.4e-38
UNIPROTKB|Q9FDX8	395	HD1 "Zinc finger protein HD1"	0.215	0.2	0.493	2.3e-37
TAIR|locus:2143221	355	COL1 "CONSTANS-like 1" [Arabid	0.920	0.949	0.314	1.7e-36
TAIR|locus:2143206	373	CO "CONSTANS" [Arabidopsis tha	0.972	0.954	0.292	8.3e-35
TAIR|locus:2047246	294	COL3 "CONSTANS-like 3" [Arabid	0.196	0.244	0.402	1.2e-26
TAIR|locus:2172545	355	COL5 "CONSTANS-like 5" [Arabid	0.877	0.904	0.267	1.1e-25
UNIPROTKB|Q9FRZ7	342	Hd1 "Hd1 protein" [Oryza sativ	0.448	0.479	0.338	9e-22
UNIPROTKB|Q9FRZ6	259	Q9FRZ6 "Hd1" [Oryza sativa (ta	0.401	0.567	0.360	2.1e-20
TAIR|locus:2050130	172	BBX18 "B-box domain protein 18	0.185	0.395	0.394	2.2e-08

TAIR|locus:2074587 COL2 "CONSTANS-like 2" [Arabidopsis thaliana (taxid:3702)]

 Score = 251 (93.4 bits), Expect = 9.6e-44, Sum P(2) = 9.6e-44
 Identities = 72/233 (30%), Positives = 107/233 (45%)

Query:   141 DEDEMDSWLLLEPANHDNQMNSGHTYVQELDESFGMEYNSCTKHEXXXXXXXXXXXXTH- 199
             D+ E+ SWLL  P  +    N+G          FG+EY     +             TH 
Sbjct:   124 DDREVASWLLPNPGKNIGNQNNGFL--------FGVEYLDLVDYSSSMDNQFEDNQYTHY 175

Query:   200 RGDNGSDGVVPVQPFXXXXXXXXXXXXXXXXNEY-FSR--KYEASKAAFINNPSMSQTVP 256
             +   G DGVVP+Q                    Y FS    Y  +    +N+ +   ++ 
Sbjct:   176 QRSFGGDGVVPLQVEESTSHLQQSQQNFQLGINYGFSSGAHYNNNSLKDLNHSASVSSMD 235

Query:   257 VSGILPKATRADISSSYTKYSQGTNDLFPNFSFFVPLQFSPMNRVAKVLXXXXXXXXXXX 316
             +S ++P++T +DI+  + + ++ T D        V  Q +PM R A+VL           
Sbjct:   236 IS-VVPESTASDITVQHPRTTKETIDQLSGPPTQVVQQLTPMEREARVLRYREKKKTRKF 294

Query:   317 XXXXXYASRKAYAEARPRVKGRFARKTEMDFEVDEMFS---IEEYGYGIVPSY 366
                  YASRKAYAE RPR+KGRFA++ E + E +E+FS   + E GYGIVPS+
Sbjct:   295 DKTIRYASRKAYAEIRPRIKGRFAKRIETEAEAEEIFSTSLMSETGYGIVPSF 347

GO:0005622 "intracellular" evidence=IEA

GO:0005634 "nucleus" evidence=ISM

GO:0008270 "zinc ion binding" evidence=IEA;ISS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

GO:0009909 "regulation of flower development" evidence=IMP

GO:0009658 "chloroplast organization" evidence=IMP

UNIPROTKB|Q9FE92 Hd1 "Heading day 1" [Oryza sativa (taxid:4530)]

 Score = 241 (89.9 bits), Expect = 1.4e-38, Sum P(2) = 1.4e-38
 Identities = 57/158 (36%), Positives = 77/158 (48%)

Query:     8 GDGDGYPGDWMRTCNTCKAAVSTLYCHTHLAYFCDSCDERVHAYNSMALPHERMWVSAAC 67
             G+G G P  W R C+ C+AA S +YC    AY C SCD RVHA N +A  HER+ V  AC
Sbjct:    24 GEGSGCP--WARPCDGCRAAPSVVYCRADAAYLCASCDARVHAANRVASRHERVRVCEAC 81

Query:    68 ENGQATFSCNTDAASLRLSCDADKXXXXXXXXXXXXXXXXXXFSDLFTAPSSTYLPDPMF 127
             E   A  +C  DAA+L ++CD                          T P+++ L     
Sbjct:    82 ERAPAALACRADAAALCVACDVQVYSANPLARRHQRVPVAPL--PAITIPATSVL----- 134

Query:   128 DTEKEVTAPTIEVDEDE-MDSWLLLEPANHDNQMNSGH 164
               E  V   T+  D+DE +DSWLLL   + +N  N+ +
Sbjct:   135 -AEAVVATATVLGDKDEEVDSWLLLSKDSDNNNNNNNN 171

GO:0003677 "DNA binding" evidence=ISS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

GO:0005634 "nucleus" evidence=ISS

GO:0006355 "regulation of transcription, DNA-dependent" evidence=ISS

GO:0008270 "zinc ion binding" evidence=ISS

GO:0010229 "inflorescence development" evidence=IGI

GO:0048571 "long-day photoperiodism" evidence=IEP

GO:0048572 "short-day photoperiodism" evidence=IEP

UNIPROTKB|Q9FDX8 HD1 "Zinc finger protein HD1" [Oryza sativa Japonica Group (taxid:39947)]

 Score = 215 (80.7 bits), Expect = 2.3e-37, Sum P(3) = 2.3e-37
 Identities = 40/81 (49%), Positives = 50/81 (61%)

Query:     8 GDGDGYPGDWMRTCNTCKAAVSTLYCHTHLAYFCDSCDERVHAYNSMALPHERMWVSAAC 67
             G+G G P  W R C+ C+AA S +YC    AY C SCD RVHA N +A  HER+ V  AC
Sbjct:    24 GEGSGCP--WARPCDGCRAAPSVVYCRADAAYLCASCDARVHAANRVASRHERVRVCEAC 81

Query:    68 ENGQATFSCNTDAASLRLSCD 88
             E   A  +C  DAA+L ++CD
Sbjct:    82 ERAPAALACRADAAALCVACD 102

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

GO:0009909 "regulation of flower development" evidence=IMP

GO:0010229 "inflorescence development" evidence=IGI

GO:0045892 "negative regulation of transcription, DNA-dependent" evidence=IMP

GO:0048571 "long-day photoperiodism" evidence=IEP

GO:0048572 "short-day photoperiodism" evidence=IEP

GO:0048576 "positive regulation of short-day photoperiodism, flowering" evidence=IMP

GO:0048579 "negative regulation of long-day photoperiodism, flowering" evidence=IMP

TAIR|locus:2143221 COL1 "CONSTANS-like 1" [Arabidopsis thaliana (taxid:3702)]

 Score = 393 (143.4 bits), Expect = 1.7e-36, P = 1.7e-36
 Identities = 114/363 (31%), Positives = 167/363 (46%)

Query:    16 DWMRTCNTCKAAVSTLYCHTHLAYFCDSCDERVHAYNSMALPHERMWVSAACENGQATFS 75
             +W + C+TC++A  T+YC    AY C SCD +VHA N +A  HER+ V  +CE   A F 
Sbjct:     7 NWAQACDTCRSAACTVYCRADSAYLCSSCDAQVHAANRLASRHERVRVCQSCERAPAAFF 66

Query:    76 CNTDAASLRLSCDADKXXXXXXXXXXXXXXXXXXFSDLFTAPSSTYLPDP-MFDTEKEVT 134
             C  DAASL  +CD++                       +++ ++ +  +  + D E  + 
Sbjct:    67 CKADAASLCTTCDSEIHSANPLARRHQRVPILPISEYSYSSTATNHSCETTVTDPENRLV 126

Query:   135 APTIEVDEDEMD--SWLLLEPANHDNQMNSGHTYVQELDESFGM-EYNSCTKHEXXXXXX 191
                 E DEDE +  SWLL  P +  N  N+    +   DE   + +Y+S  K        
Sbjct:   127 LGQEEEDEDEAEAASWLL--PNSGKNSGNNNGFSIG--DEFLNLVDYSSSDKQFTDQSNQ 182

Query:   192 XXXXXXTHRGDNGSDGVVPVQPFXXXXXXXXXXXXXXXXNEYFSRKYEASKAAFINNPSM 251
                     +   G DGVVP+Q                  N   S    +  A   +N S+
Sbjct:   183 YQLDCNVPQRSYGEDGVVPLQ------IEVSKGMYQEQQNFQLSINCGSWGALRSSNGSL 236

Query:   252 SQTVPVS----GILPKATRADISSSYTKYSQGTNDLFPNFSFFVPLQF-SPMNRVAKVLX 306
             S  V VS    G++P++T +D + S  +  +   D  P    + P Q  SP +R A+VL 
Sbjct:   237 SHMVNVSSMDLGVVPESTTSDATVSNPRSPKAVTDQPP----YPPAQMLSPRDREARVLR 292

Query:   307 XXXXXXXXXXXXXXXYASRKAYAEARPRVKGRFARKTEMDFEVDEMFSIE---EYGYGIV 363
                            YASRKAYAE RPR+KGRFA+K ++D E ++ FS     + GYGIV
Sbjct:   293 YREKKKMRKFEKTIRYASRKAYAEKRPRIKGRFAKKKDVDEEANQAFSTMITFDTGYGIV 352

Query:   364 PSY 366
             PS+
Sbjct:   353 PSF 355

GO:0005622 "intracellular" evidence=IEA

GO:0005634 "nucleus" evidence=ISM

GO:0008270 "zinc ion binding" evidence=IEA;ISS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

GO:0007623 "circadian rhythm" evidence=IMP

GO:0009909 "regulation of flower development" evidence=IMP

GO:0005515 "protein binding" evidence=IPI

GO:0042802 "identical protein binding" evidence=IPI

GO:0006281 "DNA repair" evidence=RCA

GO:0010100 "negative regulation of photomorphogenesis" evidence=RCA

GO:0048608 "reproductive structure development" evidence=RCA

TAIR|locus:2143206 CO "CONSTANS" [Arabidopsis thaliana (taxid:3702)]

 Score = 377 (137.8 bits), Expect = 8.3e-35, P = 8.3e-35
 Identities = 112/383 (29%), Positives = 174/383 (45%)

Query:     1 MLNANSSGDGDGYPGDWMRTCNTCKAAVSTLYCHTHLAYFCDSCDERVHAYNSMALPHER 60
             ML   S+  G G   +  R C+TC++   T+YCH   AY C SCD +VH+ N +A  H+R
Sbjct:     1 MLKQESNDIGSG-ENNRARPCDTCRSNACTVYCHADSAYLCMSCDAQVHSANRVASRHKR 59

Query:    61 MWVSAACENGQATFSCNTDAASLRLSCDADKXXXXXXXXXXXXXXXXXXFSDLFTAPSST 120
             + V  +CE   A F C  D ASL  +CD++                     + F++ ++T
Sbjct:    60 VRVCESCERAPAAFLCEADDASLCTACDSEVHSANPLARRHQRVPILPISGNSFSSMTTT 119

Query:   121 YLPDP--MFDTEKEVTAPTIEVDEDEMD-----SWLLLEPANHDNQMNSGHTYVQELDES 173
             +      M D EK +     E +E + D     SWL      ++N  N+G  +    DE 
Sbjct:   120 HHQSEKTMTDPEKRLVVDQEEGEEGDKDAKEVASWLFPNSDKNNNNQNNGLLFS---DEY 176

Query:   174 FGM-EYNSCTKHEXXXXXXXXXXX-XTHRGDNGSDGVVPVQPFXXXXXXXXXXXXXXXXN 231
               + +YNS   ++               +   G D VVP++                  N
Sbjct:   177 LNLVDYNSSMDYKFTGEYSQHQQNCSVPQTSYGGDRVVPLK-----LEESRGHQCHNQQN 231

Query:   232 EYFSRKYEASKAAFINNPSMSQTVPVS----GILPKATRADISSSYTKYSQGTNDLFPN- 286
               F+ KY +S   + +N S++    +S    G++P++T    ++S+ +  +GT +  P+ 
Sbjct:   232 FQFNIKYGSSGTHYNDNGSINHNAYISSMETGVVPESTACVTTASHPRTPKGTVEQQPDP 291

Query:   287 -FSFFVPLQFSPMNRVAKVLXXXXXXXXXXXXXXXXYASRKAYAEARPRVKGRFARKTEM 345
                     Q SPM+R A+VL                YASRKAYAE RPRV GRFA++ E+
Sbjct:   292 ASQMITVTQLSPMDREARVLRYREKRKTRKFEKTIRYASRKAYAEIRPRVNGRFAKR-EI 350

Query:   346 DFEVDEMFSIEEY--GYGIVPSY 366
             + E     ++  Y  GYGIVPS+
Sbjct:   351 EAEEQGFNTMLMYNTGYGIVPSF 373

GO:0005622 "intracellular" evidence=IEA

GO:0005634 "nucleus" evidence=ISM;IDA;NAS

GO:0008270 "zinc ion binding" evidence=IEA;ISS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

GO:0007623 "circadian rhythm" evidence=IGI

GO:0009909 "regulation of flower development" evidence=IMP

GO:0005515 "protein binding" evidence=IPI

GO:0010018 "far-red light signaling pathway" evidence=IMP

GO:0010218 "response to far red light" evidence=IMP

GO:0006281 "DNA repair" evidence=RCA

GO:0010100 "negative regulation of photomorphogenesis" evidence=RCA

GO:0048608 "reproductive structure development" evidence=RCA

TAIR|locus:2047246 COL3 "CONSTANS-like 3" [Arabidopsis thaliana (taxid:3702)]

 Score = 188 (71.2 bits), Expect = 1.2e-26, Sum P(3) = 1.2e-26
 Identities = 29/72 (40%), Positives = 44/72 (61%)

Query:    19 RTCNTCKAAVSTLYCHTHLAYFCDSCDERVHAYNSMALPHERMWVSAACENGQATFSCNT 78
             R C++CK+  +TL+C    A+ C  CD ++H  N +A  HER+W+   CE   A  +C  
Sbjct:     6 RLCDSCKSTAATLFCRADAAFLCGDCDGKIHTANKLASRHERVWLCEVCEQAPAHVTCKA 65

Query:    79 DAASLRLSCDAD 90
             DAA+L ++CD D
Sbjct:    66 DAAALCVTCDRD 77

GO:0005622 "intracellular" evidence=IEA

GO:0005634 "nucleus" evidence=ISM;IDA

GO:0008270 "zinc ion binding" evidence=IEA;ISS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

GO:0005515 "protein binding" evidence=IPI

GO:0010099 "regulation of photomorphogenesis" evidence=IMP

GO:0010161 "red light signaling pathway" evidence=IMP

GO:0009637 "response to blue light" evidence=RCA

GO:0009644 "response to high light intensity" evidence=RCA

GO:0009744 "response to sucrose stimulus" evidence=RCA

GO:0010114 "response to red light" evidence=RCA

GO:0010155 "regulation of proton transport" evidence=RCA

GO:0010218 "response to far red light" evidence=RCA

GO:0032880 "regulation of protein localization" evidence=RCA

TAIR|locus:2172545 COL5 "CONSTANS-like 5" [Arabidopsis thaliana (taxid:3702)]

 Score = 291 (107.5 bits), Expect = 1.1e-25, P = 1.1e-25
 Identities = 100/374 (26%), Positives = 155/374 (41%)

Query:    15 GDW---MRTCNTCKAAVSTLYCHTHLAYFCDSCDERVHAYNSMALPHERMWVSAACENGQ 71
             G W    R+C+ CK+  + ++C    A+ C +CD R+H++      HER+WV   CE   
Sbjct:    13 GGWGAAARSCDACKSVTAAVFCRVDSAFLCIACDTRIHSFTR----HERVWVCEVCEQAP 68

Query:    72 ATFSCNTDAASLRLSCDADKXXXXXXXXXXXXXXXXXXFSDLFTAPSSTYLPDPM----F 127
             A  +C  DAA+L +SCDAD                   F    TA +             
Sbjct:    69 AAVTCKADAAALCVSCDADIHSANPLASRHERVPVETFFDSAETAVAKISASSTFGILGS 128

Query:   128 DTEKEVTAPTIEVDEDEMDSWLLLEPANHDNQMNSGHTYVQELDESFGMEYNSCTKHEXX 187
              T  ++TA  +  D+  +  WLL    N   ++  G   ++   +    +++     E  
Sbjct:   129 STTVDLTAVPVMADDLGLCPWLLPNDFNEPAKIEIGTENMKGSSDFMFSDFDRLIDFEFP 188

Query:   188 XXXXXXXXXXTHRGDNGSDGVVPVQPFXXXXXXXXXXXXXXXXNEY-FSRKYEASKAAFI 246
                        H+ + G D +VPVQ                  N++ F   +  SK +  
Sbjct:   189 NSFNH------HQNNAGGDSLVPVQ--------TKTEPLPLTNNDHCFDIDFCRSKLSAF 234

Query:   247 NNPSMSQTVPVS------GILPKA-TRADIS-SSYTKYSQGTNDLFPNFSFFVPLQFSPM 298
               PS S +  VS      G++P   T   ++ S+ T  + G +            Q S M
Sbjct:   235 TYPSQSVSHSVSTSSIEYGVVPDGNTNNSVNRSTITSSTTGGDH-----------QASSM 283

Query:   299 NRVAKVLXXXXXXXXXXXXXXXXYASRKAYAEARPRVKGRFARKTEMDFEVDEMFSIEEY 358
             +R A+VL                YASRKAYAE+RPR+KGRFA++TE   E D++F    Y
Sbjct:   284 DREARVLRYREKRKNRKFEKTIRYASRKAYAESRPRIKGRFAKRTET--ENDDIFLSHVY 341

Query:   359 G------YGIVPSY 366
                    YG+VP++
Sbjct:   342 ASAAHAQYGVVPTF 355

GO:0005622 "intracellular" evidence=IEA

GO:0005634 "nucleus" evidence=ISM

GO:0008270 "zinc ion binding" evidence=IEA;ISS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

GO:0006355 "regulation of transcription, DNA-dependent" evidence=TAS

GO:0042631 "cellular response to water deprivation" evidence=RCA

UNIPROTKB|Q9FRZ7 Hd1 "Hd1 protein" [Oryza sativa Indica Group (taxid:39946)]

 Score = 254 (94.5 bits), Expect = 9.0e-22, P = 9.0e-22
 Identities = 61/180 (33%), Positives = 91/180 (50%)

Query:     8 GDGDGYPGDWMRTCNTCKAAVSTLYCHTHLAYFCDSCDERVHAYNSMALPHERMWVSAAC 67
             G+G G P  W R C+ C+AA S +YC    AY C SCD RVHA N +A  HER+ V  AC
Sbjct:    24 GEGSGCP--WARPCDGCRAAPSVVYCRADAAYLCASCDARVHAANRVASRHERVRVCEAC 81

Query:    68 ENGQATFSCNTDAASLRLSCDADKXXXXXXXXXXXXXXXXXXFSDLFTAPSSTYLPDPMF 127
             E   A  +C  DAA+L ++CD                          T P+++ L + + 
Sbjct:    82 EQAPAALACRADAAALCVACDVQVHSANPLARRHQRVPVAPL--PAITIPATSVLAEAVV 139

Query:   128 DTEKEVTAPTIEVDEDEMDSWLLL-EPANHDNQMNSGHT-----YVQELDESFGME-YNS 180
                   TA  +   ++E+DSW++L + +N++N  N+ ++     Y  E+DE F +  YNS
Sbjct:   140 -----ATATVLGGKDEEVDSWIILSKDSNNNNNNNNSNSSNNGMYFGEVDEYFDLVGYNS 194

GO:0003677 "DNA binding" evidence=ISS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

GO:0005634 "nucleus" evidence=ISS

GO:0006355 "regulation of transcription, DNA-dependent" evidence=ISS

GO:0008270 "zinc ion binding" evidence=ISS

GO:0010229 "inflorescence development" evidence=IGI

GO:0048571 "long-day photoperiodism" evidence=IEP

GO:0048572 "short-day photoperiodism" evidence=IEP

UNIPROTKB|Q9FRZ6 Q9FRZ6 "Hd1" [Oryza sativa (taxid:4530)]

 Score = 241 (89.9 bits), Expect = 2.1e-20, P = 2.1e-20
 Identities = 57/158 (36%), Positives = 77/158 (48%)

Query:     8 GDGDGYPGDWMRTCNTCKAAVSTLYCHTHLAYFCDSCDERVHAYNSMALPHERMWVSAAC 67
             G+G G P  W R C+ C+AA S +YC    AY C SCD RVHA N +A  HER+ V  AC
Sbjct:    24 GEGSGCP--WARPCDGCRAAPSVVYCRADAAYLCASCDARVHAANRVASRHERVRVCEAC 81

Query:    68 ENGQATFSCNTDAASLRLSCDADKXXXXXXXXXXXXXXXXXXFSDLFTAPSSTYLPDPMF 127
             E   A  +C  DAA+L ++CD                          T P+++ L     
Sbjct:    82 ERAPAALACRADAAALCVACDVQVYSANPLARRHQRVPVAPL--PAITIPATSVL----- 134

Query:   128 DTEKEVTAPTIEVDEDE-MDSWLLLEPANHDNQMNSGH 164
               E  V   T+  D+DE +DSWLLL   + +N  N+ +
Sbjct:   135 -AEAVVATATVLGDKDEEVDSWLLLSKDSDNNNNNNNN 171

GO:0003677 "DNA binding" evidence=ISS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

GO:0005634 "nucleus" evidence=ISS

GO:0006355 "regulation of transcription, DNA-dependent" evidence=ISS

GO:0008270 "zinc ion binding" evidence=ISS

GO:0010229 "inflorescence development" evidence=IGI

GO:0048571 "long-day photoperiodism" evidence=IEP

GO:0048572 "short-day photoperiodism" evidence=IEP

TAIR|locus:2050130 BBX18 "B-box domain protein 18" [Arabidopsis thaliana (taxid:3702)]

 Score = 133 (51.9 bits), Expect = 2.2e-08, P = 2.2e-08
 Identities = 30/76 (39%), Positives = 41/76 (53%)

Query:    21 CNTCKAAVSTLYCHTHLAYFCDSCDERVHAYNSMALPHERMWV---SAA-----CENGQA 72
             C+ C++A + ++C    A  C SCDE+VH  N +A  H R+ +   S A     CEN  A
Sbjct:     5 CDACESAAAIVFCAADEAALCCSCDEKVHKCNKLASRHLRVGLADPSNAPSCDICENAPA 64

Query:    73 TFSCNTDAASLRLSCD 88
              F C  D +SL L CD
Sbjct:    65 FFYCEIDGSSLCLQCD 80

GO:0005622 "intracellular" evidence=IEA

GO:0005634 "nucleus" evidence=ISM

GO:0008270 "zinc ion binding" evidence=IEA;ISS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

GO:0006355 "regulation of transcription, DNA-dependent" evidence=TAS

GO:0010264 "myo-inositol hexakisphosphate biosynthetic process" evidence=RCA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q9FDX8	HD1_ORYSJ	No assigned EC number	0.3564	0.8879	0.8227	yes	no
Q96502	COL2_ARATH	No assigned EC number	0.3966	0.8934	0.9423	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: gw1.123.49.1 SubName- Full=Putative uncharacterized protein; (355 aa) (Populus trichocarpa)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	366
pfam06203	45	pfam06203, CCT, CCT motif	2e-23

>gnl|CDD|203407 pfam06203, CCT, CCT motif

 Score = 91.1 bits (227), Expect = 2e-23
 Identities = 32/45 (71%), Positives = 40/45 (88%)

Query: 300 RVAKVLRYREKRKARRFEKKIRYASRKAYAEARPRVKGRFARKTE 344
           R A +LRY+EKRK R+F+KKIRYASRKA AE+RPRVKGRF +++E
Sbjct: 1   REAALLRYKEKRKTRKFDKKIRYASRKAVAESRPRVKGRFVKQSE 45

This short motif is found in a number of plant proteins. It is rich in basic amino acids and has been called a CCT motif after Co, Col and Toc1. The CCT motif is about 45 amino acids long and contains a putative nuclear localisation signal within the second half of the CCT motif. Toc1 mutants have been identified in this region. Length = 45

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	366
PF06203	45	CCT: CCT motif; InterPro: IPR010402 The CCT (CONST	99.8
cd00021	39	BBOX B-Box-type zinc finger; zinc binding domain (	97.24
cd00021	39	BBOX B-Box-type zinc finger; zinc binding domain (	97.24
smart00336	42	BBOX B-Box-type zinc finger.	96.85
PF00643	42	zf-B_box: B-box zinc finger; InterPro: IPR000315 Z	96.75
KOG1601	340	consensus GATA-4/5/6 transcription factors [Transc	96.54
smart00336	42	BBOX B-Box-type zinc finger.	96.22
PF09425	27	CCT_2: Divergent CCT motif; InterPro: IPR018467 Th	96.1
PF00643	42	zf-B_box: B-box zinc finger; InterPro: IPR000315 Z	95.9
KOG4367	699	consensus Predicted Zn-finger protein [Function un	95.3

>PF06203 CCT: CCT motif; InterPro: IPR010402 The CCT (CONSTANS, CO-like, and TOC1) domain is a highly conserved basic module of ~43 amino acids, which is found near the C terminus of plant proteins often involved in light signal transduction

Probab=99.80  E-value=2.4e-20  Score=135.11  Aligned_cols=45  Identities=71%  Similarity=1.074  Sum_probs=43.2

Q ss_pred             HHHHHHHHHHHhhhhcccccccchhhhhhhhhCCCCCcccccCCc
Q 017738          300 RVAKVLRYREKRKARRFEKKIRYASRKAYAEARPRVKGRFARKTE  344 (366)
Q Consensus       300 R~~~~~ryreKrk~R~f~k~irY~~Rk~~A~~RpRvkGrF~k~~~  344 (366)
                      |+++|+||+|||++|+|+|+|+|++||++|+.|||||||||+.++
T Consensus         1 R~~~l~Ry~~Kr~~R~f~kkirY~~Rk~~A~~R~RvkGRFvk~~e   45 (45)
T PF06203_consen    1 REEKLQRYREKRKRRNFEKKIRYESRKAVADKRPRVKGRFVKKSE   45 (45)
T ss_pred             CHHHHHHHHHHHHhhcccccCCcchHHHHHhhCCccCCcccCCCC
Confidence            689999999999999999999999999999999999999999864

The CCT domain is found in association with other domains, such as the B-box zinc finger, the GATA-type zinc finger, the ZIM motif or the response regulatory domain. The CCT domain contains a putative nuclear localisation signal within the second half of the CCT motif and has been shown to be involved in nuclear localization and probably also has a role in protein-protein interaction [].; GO: 0005515 protein binding

>cd00021 BBOX B-Box-type zinc finger; zinc binding domain (CHC3H2); often present in combination with other motifs, like RING zinc finger, NHL motif, coiled-coil or RFP domain in functionally unrelated proteins, most likely mediating protein-protein interaction

Probab=97.24  E-value=0.00021  Score=48.73  Aligned_cols=38  Identities=32%  Similarity=0.652  Sum_probs=33.7

Q ss_pred             cCcccCCCCeeEEeeCCCccccccccccccccccCcCCcccccc
Q 017738           20 TCNTCKAAVSTLYCHTHLAYFCDSCDERVHAYNSMALPHERMWV   63 (366)
Q Consensus        20 ~Cd~C~~~~A~vyC~aD~A~LC~~CDa~vH~aN~La~rH~Rv~L   63 (366)
                      .|+.++.+++.+||..|.+.+|..|+...|.      .|.+++|
T Consensus         2 ~C~~H~~~~~~~fC~~~~~~iC~~C~~~~H~------~H~~~~i   39 (39)
T cd00021           2 LCDEHGEEPLSLFCETDRALLCVDCDLSVHS------GHRRVPL   39 (39)
T ss_pred             CCCccCCcceEEEeCccChhhhhhcChhhcC------CCCEeeC
Confidence            6999998899999999999999999988774      5888765

>cd00021 BBOX B-Box-type zinc finger; zinc binding domain (CHC3H2); often present in combination with other motifs, like RING zinc finger, NHL motif, coiled-coil or RFP domain in functionally unrelated proteins, most likely mediating protein-protein interaction

Probab=97.24  E-value=0.00019  Score=48.87  Aligned_cols=39  Identities=31%  Similarity=0.487  Sum_probs=33.6

Q ss_pred             cccccCCCCcceeEecccccccccccccCCCCCCcccCCCCCcccc
Q 017738           62 WVSAACENGQATFSCNTDAASLRLSCDADKHLANFLAHHHHARVPA  107 (366)
Q Consensus        62 ~LCe~C~~~PA~v~C~aD~a~LC~sCD~~iHsaN~la~rH~~RvPv  107 (366)
                      ++|+.|+..++.+||..|...+|..|+...|.      .| .++||
T Consensus         1 ~~C~~H~~~~~~~fC~~~~~~iC~~C~~~~H~------~H-~~~~i   39 (39)
T cd00021           1 RLCDEHGEEPLSLFCETDRALLCVDCDLSVHS------GH-RRVPL   39 (39)
T ss_pred             CCCCccCCcceEEEeCccChhhhhhcChhhcC------CC-CEeeC
Confidence            36888888899999999999999999998863      68 88775

>smart00336 BBOX B-Box-type zinc finger

Probab=96.85  E-value=0.00091  Score=46.15  Aligned_cols=41  Identities=27%  Similarity=0.326  Sum_probs=34.6

Q ss_pred             cccccccCCCCcceeEecccccccccccccCCCCCCcccCCCCCcccc
Q 017738           60 RMWVSAACENGQATFSCNTDAASLRLSCDADKHLANFLAHHHHARVPA  107 (366)
Q Consensus        60 Rv~LCe~C~~~PA~v~C~aD~a~LC~sCD~~iHsaN~la~rH~~RvPv  107 (366)
                      |.++|+.|+..++.+||..|...||..|....|      +.| .++||
T Consensus         2 ~~~~C~~h~~~~~~~~C~~c~~~iC~~C~~~~H------~~H-~~~~l   42 (42)
T smart00336        2 RPPKCDSHGDEPAEFFCEECGALLCRTCDEAEH------RGH-TVVLL   42 (42)
T ss_pred             cCCcCCCCCCCceEEECCCCCcccccccChhhc------CCC-ceecC
Confidence            577899999889999999999999999998755      457 66654

>PF00643 zf-B_box: B-box zinc finger; InterPro: IPR000315 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule

Probab=96.75  E-value=0.00062  Score=47.59  Aligned_cols=40  Identities=18%  Similarity=0.229  Sum_probs=33.9

Q ss_pred             ccccccCCCCcceeEecccccccccccccCCCCCCcccCCCCCcccc
Q 017738           61 MWVSAACENGQATFSCNTDAASLRLSCDADKHLANFLAHHHHARVPA  107 (366)
Q Consensus        61 v~LCe~C~~~PA~v~C~aD~a~LC~sCD~~iHsaN~la~rH~~RvPv  107 (366)
                      .++|..|+..++.+||..|..+||..|....|..      | ..+||
T Consensus         3 ~~~C~~H~~~~~~~~C~~C~~~~C~~C~~~~H~~------H-~~~~i   42 (42)
T PF00643_consen    3 EPKCPEHPEEPLSLFCEDCNEPLCSECTVSGHKG------H-KIVPI   42 (42)
T ss_dssp             SSB-SSTTTSBEEEEETTTTEEEEHHHHHTSTTT------S-EEEEC
T ss_pred             CccCccCCccceEEEecCCCCccCccCCCCCCCC------C-EEeEC
Confidence            4689999998899999999999999999999753      7 77765

Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents B-box-type zinc finger domains, which are around 40 residues in length. B-box zinc fingers can be divided into two groups, where types 1 and 2 B-box domains differ in their consensus sequence and in the spacing of the 7-8 zinc-binding residues. Several proteins contain both types 1 and 2 B-boxes, suggesting some level of cooperativity between these two domains. B-box domains are found in over 1500 proteins from a variety of organisms. They are found in TRIM (tripartite motif) proteins that consist of an N-terminal RING finger (originally called an A-box), followed by 1-2 B-box domains and a coiled-coil domain (also called RBCC for Ring, B-box, Coiled-Coil). TRIM proteins contain a type 2 B-box domain, and may also contain a type 1 B-box. In proteins that do not contain RING or coiled-coil domains, the B-box domain is primarily type 2. Many type 2 B-box proteins are involved in ubiquitinylation. Proteins containing a B-box zinc finger domain include transcription factors, ribonucleoproteins and proto-oncoproteins; for example, MID1, MID2, TRIM9, TNL, TRIM36, TRIM63, TRIFIC, NCL1 and CONSTANS-like proteins []. The microtubule-associated E3 ligase MID1 (6.3.2 from EC) contains a type 1 B-box zinc finger domain. MID1 specifically binds Alpha-4, which in turn recruits the catalytic subunit of phosphatase 2A (PP2Ac). This complex is required for targeting of PP2Ac for proteasome-mediated degradation. The MID1 B-box coordinates two zinc ions and adopts a beta/beta/alpha cross-brace structure similar to that of ZZ, PHD, RING and FYVE zinc fingers [, ]. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0008270 zinc ion binding, 0005622 intracellular; PDB: 3DDT_B 2D8U_A 3Q1D_A 2EGM_A 2YVR_B 2DJA_A 2DQ5_A 2JUN_A 2YRG_A 2DID_A ....

>KOG1601 consensus GATA-4/5/6 transcription factors [Transcription]

Probab=96.54  E-value=0.00075  Score=61.36  Aligned_cols=94  Identities=26%  Similarity=0.219  Sum_probs=68.4

Q ss_pred             cccCcccCCCCeeEEeeCCCccccccccccccccccCcCCcccccccccCCCCcce--eEeccccccc----ccccccCC
Q 017738           18 MRTCNTCKAAVSTLYCHTHLAYFCDSCDERVHAYNSMALPHERMWVSAACENGQAT--FSCNTDAASL----RLSCDADK   91 (366)
Q Consensus        18 ~~~Cd~C~~~~A~vyC~aD~A~LC~~CDa~vH~aN~La~rH~Rv~LCe~C~~~PA~--v~C~aD~a~L----C~sCD~~i   91 (366)
                      ...|+.|....... |..|...+|..|+.+++..+.+...|.++.++..|...++.  +.+..+...+    +..++...
T Consensus         5 ~~~~~~~~~~~~~~-~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   83 (340)
T KOG1601|consen    5 AEDLDSCRFDDLLN-LNADDSLLDISVDARLSASNSLAFPHEPTRLSSSPESFVAATSFSIDLSVPSLDMPGLEGFSLFV   83 (340)
T ss_pred             cccccccCcccccc-cccccccCCcccccccccccccccccccccccchhhhhhcccccccccccccccccccccccccc
Confidence            34566666655555 99999999999999999998777789999999988733322  4555555555    56688888


Q ss_pred             CCCCcccCCCCCccccCCCCCC
Q 017738           92 HLANFLAHHHHARVPAPPFSDL  113 (366)
Q Consensus        92 HsaN~la~rH~~RvPv~~~~~~  113 (366)
                      +..++...+| ..+++.+....
T Consensus        84 ~~~~~~~~~~-~~~~~~~~~~~  104 (340)
T KOG1601|consen   84 SENNPNSLRH-PPVPSMPSSNS  104 (340)
T ss_pred             ccccCCCCCC-CCccccccccc
Confidence            8777777788 66766666543

>smart00336 BBOX B-Box-type zinc finger

Probab=96.22  E-value=0.0038  Score=43.01  Aligned_cols=40  Identities=23%  Similarity=0.541  Sum_probs=33.6

Q ss_pred             cccCcccCCCCeeEEeeCCCccccccccccccccccCcCCcccccc
Q 017738           18 MRTCNTCKAAVSTLYCHTHLAYFCDSCDERVHAYNSMALPHERMWV   63 (366)
Q Consensus        18 ~~~Cd~C~~~~A~vyC~aD~A~LC~~CDa~vH~aN~La~rH~Rv~L   63 (366)
                      .+.|..|...++.+||..|.+.+|..|....|      +.|.+++|
T Consensus         3 ~~~C~~h~~~~~~~~C~~c~~~iC~~C~~~~H------~~H~~~~l   42 (42)
T smart00336        3 PPKCDSHGDEPAEFFCEECGALLCRTCDEAEH------RGHTVVLL   42 (42)
T ss_pred             CCcCCCCCCCceEEECCCCCcccccccChhhc------CCCceecC
Confidence            46799999889999999999999999998766      45776654

>PF09425 CCT_2: Divergent CCT motif; InterPro: IPR018467 The short CCT (CO, COL, TOC1) motif is found in a number of plant proteins, including Constans (CO), Constans-like (COL) and TOC1

Probab=96.10  E-value=0.0033  Score=41.37  Aligned_cols=26  Identities=42%  Similarity=0.588  Sum_probs=9.9

Q ss_pred             HHHHHHHHHHHHHHhhhhcccccccch
Q 017738          297 PMNRVAKVLRYREKRKARRFEKKIRYA  323 (366)
Q Consensus       297 ~~~R~~~~~ryreKrk~R~f~k~irY~  323 (366)
                      |..|.+.|+||.||||.|... +..|.
T Consensus         1 P~aRK~SLqRFLeKRK~R~~~-~~PY~   26 (27)
T PF09425_consen    1 PIARKASLQRFLEKRKDRLAA-KSPYQ   26 (27)
T ss_dssp             -----HHHHHHHHHH------------
T ss_pred             CchHHHHHHHHHHHHHHhhcc-CCCCC
Confidence            357999999999999999987 66664

The CCT motif is about 45 amino acids long and contains a putative nuclear localisation signal within the second half of the CCT motif []. The CCT motif is found in the Arabidopsis circadian rhythm protein TOC1, an autoregulatory response regulator homologue the controls the photoperiodic flowering through its clock function []. ; GO: 0005515 protein binding; PDB: 3OGK_V 3OGL_S 3OGM_W.

>PF00643 zf-B_box: B-box zinc finger; InterPro: IPR000315 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule

Probab=95.90  E-value=0.0054  Score=42.80  Aligned_cols=40  Identities=18%  Similarity=0.363  Sum_probs=34.2

Q ss_pred             cccCcccCCCCeeEEeeCCCccccccccccccccccCcCCcccccc
Q 017738           18 MRTCNTCKAAVSTLYCHTHLAYFCDSCDERVHAYNSMALPHERMWV   63 (366)
Q Consensus        18 ~~~Cd~C~~~~A~vyC~aD~A~LC~~CDa~vH~aN~La~rH~Rv~L   63 (366)
                      ...|..|...++.+||..+...||..|....|..      |..++|
T Consensus         3 ~~~C~~H~~~~~~~~C~~C~~~~C~~C~~~~H~~------H~~~~i   42 (42)
T PF00643_consen    3 EPKCPEHPEEPLSLFCEDCNEPLCSECTVSGHKG------HKIVPI   42 (42)
T ss_dssp             SSB-SSTTTSBEEEEETTTTEEEEHHHHHTSTTT------SEEEEC
T ss_pred             CccCccCCccceEEEecCCCCccCccCCCCCCCC------CEEeEC
Confidence            5689999998899999999999999999988864      777654

Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents B-box-type zinc finger domains, which are around 40 residues in length. B-box zinc fingers can be divided into two groups, where types 1 and 2 B-box domains differ in their consensus sequence and in the spacing of the 7-8 zinc-binding residues. Several proteins contain both types 1 and 2 B-boxes, suggesting some level of cooperativity between these two domains. B-box domains are found in over 1500 proteins from a variety of organisms. They are found in TRIM (tripartite motif) proteins that consist of an N-terminal RING finger (originally called an A-box), followed by 1-2 B-box domains and a coiled-coil domain (also called RBCC for Ring, B-box, Coiled-Coil). TRIM proteins contain a type 2 B-box domain, and may also contain a type 1 B-box. In proteins that do not contain RING or coiled-coil domains, the B-box domain is primarily type 2. Many type 2 B-box proteins are involved in ubiquitinylation. Proteins containing a B-box zinc finger domain include transcription factors, ribonucleoproteins and proto-oncoproteins; for example, MID1, MID2, TRIM9, TNL, TRIM36, TRIM63, TRIFIC, NCL1 and CONSTANS-like proteins []. The microtubule-associated E3 ligase MID1 (6.3.2 from EC) contains a type 1 B-box zinc finger domain. MID1 specifically binds Alpha-4, which in turn recruits the catalytic subunit of phosphatase 2A (PP2Ac). This complex is required for targeting of PP2Ac for proteasome-mediated degradation. The MID1 B-box coordinates two zinc ions and adopts a beta/beta/alpha cross-brace structure similar to that of ZZ, PHD, RING and FYVE zinc fingers [, ]. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0008270 zinc ion binding, 0005622 intracellular; PDB: 3DDT_B 2D8U_A 3Q1D_A 2EGM_A 2YVR_B 2DJA_A 2DQ5_A 2JUN_A 2YRG_A 2DID_A ....

>KOG4367 consensus Predicted Zn-finger protein [Function unknown]

Probab=95.30  E-value=0.0058  Score=63.33  Aligned_cols=78  Identities=18%  Similarity=0.365  Sum_probs=61.8

Q ss_pred             cccCcccCCC--CeeEEeeCCCccccccccccccccccCcCCcccccc----------------cccCCCCcceeEeccc
Q 017738           18 MRTCNTCKAA--VSTLYCHTHLAYFCDSCDERVHAYNSMALPHERMWV----------------SAACENGQATFSCNTD   79 (366)
Q Consensus        18 ~~~Cd~C~~~--~A~vyC~aD~A~LC~~CDa~vH~aN~La~rH~Rv~L----------------Ce~C~~~PA~v~C~aD   79 (366)
                      .-.|.+|+++  .|+|+|..+..|.|.-|..+.|-+-.-.++|.-++-                |.-.+-..-..||..|
T Consensus       162 a~kcqlce~a~k~a~v~ceqcdv~yc~pc~~~~hp~rgplakh~l~~~~~grvs~~~s~r~~~~ct~h~~e~~smyc~~c  241 (699)
T KOG4367|consen  162 ALKCQLCEKAPKEATVMCEQCDVFYCDPCRLRCHPPRGPLAKHRLVPPAQGRVSRRLSPRKVSTCTDHELENHSMYCVQC  241 (699)
T ss_pred             hhhhhhhcCChhhhhhhHhhCceEEechHHhccCCCCCchhhcccCCcccCceeeccchhhhhhccCCCCCCceEEEEec
Confidence            4579999885  499999999999999999999987777777765442                4343444457999999


Q ss_pred             ccccccccccCCCCCC
Q 017738           80 AASLRLSCDADKHLAN   95 (366)
Q Consensus        80 ~a~LC~sCD~~iHsaN   95 (366)
                      .+++|-.|-.++-++|
T Consensus       242 k~pvc~~clee~khs~  257 (699)
T KOG4367|consen  242 KMPVCYQCLEEGKHSS  257 (699)
T ss_pred             CChHHHHHHHhhcccc
Confidence            9999999988874443

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

No hit with e-value below 0.005

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	366
2jun_A	101	Midline-1; B-BOX, TRIM, ring finger, alternative s	98.32
3ogl_Q	21	JAZ1 incomplete degron peptide; leucine-rich repea	95.37
2jun_A	101	Midline-1; B-BOX, TRIM, ring finger, alternative s	94.11
3ogk_Q	22	JAZ1 incomplete degron peptide; leucine rich repea	93.09
2d8u_A	64	Ubiquitin ligase TRIM63; tripartite motif-containi	90.3
2yvr_A	50	Transcription intermediary factor 1-beta; ZF-B_BOX	90.19
2ffw_A	78	Midline-1; B-BOX, ring finger, zinc-finger, ligase	88.38
2did_A	53	Tripartite motif protein 39; ZF-B-box domian, Zn b	85.65
2dja_A	84	Midline-2; tripartite motif protein 1, ZF-B_BOX, s	85.25
3ddt_A	48	E3 ubiquitin-protein ligase TRIM63; zinc-binding m	84.86
2ffw_A	78	Midline-1; B-BOX, ring finger, zinc-finger, ligase	84.56
1fre_A	42	Nuclear factor XNF7; zinc-binding protein, BBOX, d	82.92

>2jun_A Midline-1; B-BOX, TRIM, ring finger, alternative splicing, coiled coil, cytoplasm, cytoskeleton, disease mutation, ligase, metal-binding; NMR {Homo sapiens}

Probab=98.32  E-value=4.6e-07  Score=72.92  Aligned_cols=83  Identities=19%  Similarity=0.341  Sum_probs=66.1

Q ss_pred             cccCcccCC---CCeeEEeeCCCccccccccccccccccCcCCcccc-c---------ccccCCCCcceeEecccccccc
Q 017738           18 MRTCNTCKA---AVSTLYCHTHLAYFCDSCDERVHAYNSMALPHERM-W---------VSAACENGQATFSCNTDAASLR   84 (366)
Q Consensus        18 ~~~Cd~C~~---~~A~vyC~aD~A~LC~~CDa~vH~aN~La~rH~Rv-~---------LCe~C~~~PA~v~C~aD~a~LC   84 (366)
                      ...|+.|..   .+|+.+|..+.+.||..|...+|..++...+|..+ +         +|+.++..+..+||..|...+|
T Consensus         3 e~~C~~C~~~~~~~av~~C~~C~~~~C~~Cl~~~h~~~~~~~~h~l~~~~~~~~~~~~~C~~H~~e~l~~fC~~~~~~iC   82 (101)
T 2jun_A            3 KVLCQFCDQDPAQDAVKTCVTCEVSYCDECLKATHPNKKPFTGHRLIEPIPDSHIRGLMCLEHEDEKVNMYCVTDDQLIC   82 (101)
T ss_dssp             CCBCTTCCSSSCCBCCEEETTTTEEECHHHHHHHSCSCSSSTTCCBSSCCCSCCSSCCCCSSCSSSCCCEEETTTTEEEC
T ss_pred             CCCCcCCCCCCCCCceEECCcCChHHhHHHCHHHhccCCccCCCeeeccccccCccCCcCcCcCCCcceEECCCCCCccc
Confidence            357999984   68999999999999999999999988877888865 2         3555444457899999999999


Q ss_pred             ccccc-CCCCCCcccCCCCCcccc
Q 017738           85 LSCDA-DKHLANFLAHHHHARVPA  107 (366)
Q Consensus        85 ~sCD~-~iHsaN~la~rH~~RvPv  107 (366)
                      ..|.. ..|.      .| .-+||
T Consensus        83 ~~C~~~~~H~------~H-~~~~l   99 (101)
T 2jun_A           83 ALCKLVGRHR------DH-QVAAL   99 (101)
T ss_dssp             HHHHHHTTTS------SS-CBCCC
T ss_pred             hhcCCCCCcC------CC-CeecC
Confidence            99987 5563      36 55554

>2jun_A Midline-1; B-BOX, TRIM, ring finger, alternative splicing, coiled coil, cytoplasm, cytoskeleton, disease mutation, ligase, metal-binding; NMR {Homo sapiens}

Probab=94.11  E-value=0.02  Score=45.46  Aligned_cols=43  Identities=19%  Similarity=0.195  Sum_probs=36.7

Q ss_pred             cccccCCC---CcceeEecccccccccccccCCCCCCcccCCCCCcc
Q 017738           62 WVSAACEN---GQATFSCNTDAASLRLSCDADKHLANFLAHHHHARV  105 (366)
Q Consensus        62 ~LCe~C~~---~PA~v~C~aD~a~LC~sCD~~iHsaN~la~rH~~Rv  105 (366)
                      ..|++|..   .+|+.+|..|...||..|....|..+....+| .++
T Consensus         4 ~~C~~C~~~~~~~av~~C~~C~~~~C~~Cl~~~h~~~~~~~~h-~l~   49 (101)
T 2jun_A            4 VLCQFCDQDPAQDAVKTCVTCEVSYCDECLKATHPNKKPFTGH-RLI   49 (101)
T ss_dssp             CBCTTCCSSSCCBCCEEETTTTEEECHHHHHHHSCSCSSSTTC-CBS
T ss_pred             CCCcCCCCCCCCCceEECCcCChHHhHHHCHHHhccCCccCCC-eee
Confidence            46999974   57999999999999999999888877777788 665

>3ogk_Q JAZ1 incomplete degron peptide; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana}

Probab=93.09  E-value=0.031  Score=34.34  Aligned_cols=19  Identities=47%  Similarity=0.545  Sum_probs=16.2

Q ss_pred             HHHHHHHHHHHhhhhcccc
Q 017738          300 RVAKVLRYREKRKARRFEK  318 (366)
Q Consensus       300 R~~~~~ryreKrk~R~f~k  318 (366)
                      |.+.|+||.||||.|...+
T Consensus         1 Rk~SLqRFleKRk~R~~~~   19 (22)
T 3ogk_Q            1 RRASLHRFLEKRKDRVTSK   19 (26)
T ss_pred             CchhHHHHHHHHHHHhhcc
Confidence            5788999999999987654

>2d8u_A Ubiquitin ligase TRIM63; tripartite motif-containing 63, muscle-specific ring finger protein 1, MURF1, ring finger protein 28; NMR {Homo sapiens} SCOP: g.43.1.1

Probab=90.30  E-value=0.15  Score=37.34  Aligned_cols=47  Identities=13%  Similarity=0.056  Sum_probs=34.9

Q ss_pred             CCcccccccccCCCCcceeEecccccccccccccC-CCCCCcccCCCCCccccCC
Q 017738           56 LPHERMWVSAACENGQATFSCNTDAASLRLSCDAD-KHLANFLAHHHHARVPAPP  109 (366)
Q Consensus        56 ~rH~Rv~LCe~C~~~PA~v~C~aD~a~LC~sCD~~-iHsaN~la~rH~~RvPv~~  109 (366)
                      .+..+..+|+..+..+-.+||..|..++|..|... .|.      .| ..+||.-
T Consensus         3 ~~~~~~~~C~~H~~e~l~lfC~~d~~~iC~~C~~~~~H~------~H-~~~~l~~   50 (64)
T 2d8u_A            3 SGSSGHPMCKEHEDEKINIYCLTCEVPTCSMCKVFGIHK------AC-EVAPLQS   50 (64)
T ss_dssp             CCCCCCCCCSSCTTCCCCSEESSSCCCCCSHHHHSSSTT------SS-CEECTTT
T ss_pred             CCCCCCCcCcCcCCCccceEcCcCCceeCccccCCCcCC------CC-CeeCHHH
Confidence            34556678888866778999999999999999864 453      47 5555543

>2yvr_A Transcription intermediary factor 1-beta; ZF-B_BOX domain, structural genomics, NPPSFA; 1.80A {Homo sapiens}

Probab=90.19  E-value=0.13  Score=35.95  Aligned_cols=44  Identities=14%  Similarity=0.143  Sum_probs=33.5

Q ss_pred             cccccccccCCCCcceeEecccccccccccccCCCCCCcccCCCCCccccC
Q 017738           58 HERMWVSAACENGQATFSCNTDAASLRLSCDADKHLANFLAHHHHARVPAP  108 (366)
Q Consensus        58 H~Rv~LCe~C~~~PA~v~C~aD~a~LC~sCD~~iHsaN~la~rH~~RvPv~  108 (366)
                      ..|..+|+..+..+-.+||..|...+|..|....|.      .| ..+||.
T Consensus         3 ~~~~~~C~~H~~e~l~lfC~~~~~~iC~~C~~~~H~------~H-~~~~l~   46 (50)
T 2yvr_A            3 GERTVYCNVHKHEPLVLFCESCDTLTCRDCQLNAHK------DH-QYQFLE   46 (50)
T ss_dssp             CCCSCBCSSSTTCBCCEEETTTTEEECHHHHHTTTT------TC-CEEETT
T ss_pred             CcCCCcCcCCCCCCEEEEeCCCCEEEecccCCCcCC------CC-ceecHH
Confidence            345667888766778899999999999999886553      46 666654

>2ffw_A Midline-1; B-BOX, ring finger, zinc-finger, ligase; NMR {Homo sapiens}

Probab=88.38  E-value=0.18  Score=39.05  Aligned_cols=44  Identities=18%  Similarity=0.180  Sum_probs=35.6

Q ss_pred             ccccccCCC---CcceeEecccccccccccccCCCCCCcccCCCCCcc
Q 017738           61 MWVSAACEN---GQATFSCNTDAASLRLSCDADKHLANFLAHHHHARV  105 (366)
Q Consensus        61 v~LCe~C~~---~PA~v~C~aD~a~LC~sCD~~iHsaN~la~rH~~Rv  105 (366)
                      ..+|+.|..   .+|.-.|..|.+.+|..|-...|...+...+| ..+
T Consensus        30 ~v~C~~C~~~~~~~A~ksCl~C~~s~C~~hl~~~H~~~~~~~~H-~L~   76 (78)
T 2ffw_A           30 KVLCQFCDQDPAQDAVKTCVTCEVSYCDECLKATHPNKKPFTGH-RLI   76 (78)
T ss_dssp             CCBCSSCCSSSCCBCCEEETTTTEEECHHHHHHHSCCCSSSCSC-CCS
T ss_pred             CccCCcCCCCCCCCCeeEccCccchhhhhhhHhhcCCCCCCCCC-ccc
Confidence            357999975   56899999999999999988768776667788 554

>2did_A Tripartite motif protein 39; ZF-B-box domian, Zn binding, one sequence two fold, NPPSFA; NMR {Homo sapiens} SCOP: g.43.1.1 PDB: 2dif_A

Probab=85.65  E-value=0.5  Score=33.36  Aligned_cols=41  Identities=20%  Similarity=0.340  Sum_probs=30.5

Q ss_pred             ccccccCCCCcceeEeccccccccccccc-CCCCCCcccCCCCCccccCC
Q 017738           61 MWVSAACENGQATFSCNTDAASLRLSCDA-DKHLANFLAHHHHARVPAPP  109 (366)
Q Consensus        61 v~LCe~C~~~PA~v~C~aD~a~LC~sCD~-~iHsaN~la~rH~~RvPv~~  109 (366)
                      ..+|+... .+-.+||..|...+|..|.. .-|      +.| ..+||.-
T Consensus         8 ~~~C~~H~-e~l~lfC~~d~~~iC~~C~~~~~H------~~H-~~~~l~e   49 (53)
T 2did_A            8 ESLCPQHH-EALSLFCYEDQEAVCLICAISHTH------RAH-TVVPLSG   49 (53)
T ss_dssp             CCBCTTTC-CBCCEEESSSCSEECHHHHTSSTT------TTS-CEEECCC
T ss_pred             CCcChhhC-CeeeEEeCCCCeEEeccccCCCCC------CCC-cEeeHHH
Confidence            34677776 56789999999999999987 345      356 6666553

>2dja_A Midline-2; tripartite motif protein 1, ZF-B_BOX, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.43.1.1 PDB: 2dq5_A

Probab=85.25  E-value=0.63  Score=35.69  Aligned_cols=45  Identities=20%  Similarity=0.302  Sum_probs=31.6

Q ss_pred             cccccccccCCCCcceeEeccccccccccccc-CCCCCCcccCCCCCccccCC
Q 017738           58 HERMWVSAACENGQATFSCNTDAASLRLSCDA-DKHLANFLAHHHHARVPAPP  109 (366)
Q Consensus        58 H~Rv~LCe~C~~~PA~v~C~aD~a~LC~sCD~-~iHsaN~la~rH~~RvPv~~  109 (366)
                      ..+..+|+..+..+-.+||..|...+|..|.. .-|      ..| .-+||.-
T Consensus        15 ~~~~~~C~~H~~e~l~lfC~~d~~~iC~~C~~~~~H------~~H-~~~~l~e   60 (84)
T 2dja_A           15 HLRGITCLDHENEKVNMYCVSDDQLICALCKLVGRH------RDH-QVASLND   60 (84)
T ss_dssp             CSSCCCCSSCSSSCCCEEETTTTEEECHHHHHTSTT------TTC-CBCCCCS
T ss_pred             CCCCCcCcCcCCccccEEcCCCCceEcccCcCCCCC------CCC-CccCHHH
Confidence            34445677765556789999999999999987 344      346 5555443

>3ddt_A E3 ubiquitin-protein ligase TRIM63; zinc-binding motif, ring-like fold, coiled coil, cytoplasm, metal-binding, muscle protein, nucleus; 1.90A {Homo sapiens} SCOP: g.43.1.1 PDB: 3q1d_A

Probab=84.86  E-value=0.44  Score=33.06  Aligned_cols=41  Identities=15%  Similarity=0.136  Sum_probs=29.4

Q ss_pred             ccccccCCCCcceeEeccccccccccccc-CCCCCCcccCCCCCccccC
Q 017738           61 MWVSAACENGQATFSCNTDAASLRLSCDA-DKHLANFLAHHHHARVPAP  108 (366)
Q Consensus        61 v~LCe~C~~~PA~v~C~aD~a~LC~sCD~-~iHsaN~la~rH~~RvPv~  108 (366)
                      ..+|+..+..+..+||..|..++|..|.. ..|.      .| .-+||.
T Consensus         6 ~~~C~~H~~e~l~lfC~~d~~~iC~~C~~~~~H~------~H-~~~~l~   47 (48)
T 3ddt_A            6 HPMCKEHEDEKINIYCLTCEVPTCSMCKVFGIHK------AC-EVAPLQ   47 (48)
T ss_dssp             SCBCSSSTTSBCCEEETTTTEEECHHHHHHSTTT------TS-CEEECC
T ss_pred             CCcCCCCCCccccEEcCCCCeeEcccccCCCcCC------CC-cEEeCC
Confidence            34677666556789999999999999974 3453      46 555553

>2ffw_A Midline-1; B-BOX, ring finger, zinc-finger, ligase; NMR {Homo sapiens}

Probab=84.56  E-value=0.54  Score=36.36  Aligned_cols=45  Identities=20%  Similarity=0.332  Sum_probs=37.1

Q ss_pred             CCcccCcccCC---CCeeEEeeCCCccccccccccccccccCcCCccc
Q 017738           16 DWMRTCNTCKA---AVSTLYCHTHLAYFCDSCDERVHAYNSMALPHER   60 (366)
Q Consensus        16 ~~~~~Cd~C~~---~~A~vyC~aD~A~LC~~CDa~vH~aN~La~rH~R   60 (366)
                      .....||+|..   .+|+-.|....+.||..|=...|...+...+|.=
T Consensus        28 ~~~v~C~~C~~~~~~~A~ksCl~C~~s~C~~hl~~~H~~~~~~~~H~L   75 (78)
T 2ffw_A           28 AEKVLCQFCDQDPAQDAVKTCVTCEVSYCDECLKATHPNKKPFTGHRL   75 (78)
T ss_dssp             SCCCBCSSCCSSSCCBCCEEETTTTEEECHHHHHHHSCCCSSSCSCCC
T ss_pred             CCCccCCcCCCCCCCCCeeEccCccchhhhhhhHhhcCCCCCCCCCcc
Confidence            34689999975   6899999999999999998767887666777763

>1fre_A Nuclear factor XNF7; zinc-binding protein, BBOX, development, MID-blastula- transition; NMR {Xenopus laevis} SCOP: g.43.1.1

Probab=82.92  E-value=0.93  Score=30.32  Aligned_cols=29  Identities=17%  Similarity=0.379  Sum_probs=22.8

Q ss_pred             ccccCCCCcceeEecccccccccccccC-CC
Q 017738           63 VSAACENGQATFSCNTDAASLRLSCDAD-KH   92 (366)
Q Consensus        63 LCe~C~~~PA~v~C~aD~a~LC~sCD~~-iH   92 (366)
                      +|+... .+-.+||..|...+|..|... -|
T Consensus         5 ~C~~H~-e~l~lfC~~d~~~iC~~C~~~~~H   34 (42)
T 1fre_A            5 KCSEHD-ERLKLYCKDDGTLSCVICRDSLKH   34 (42)
T ss_dssp             CCCSSC-SSCCCCCCSSSSSSCCTTSSCSSC
T ss_pred             cchhhC-CeeeEEeCCCCeEEeccCCCCCCC
Confidence            566655 457899999999999999873 44

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	366
d2djaa1	71	Midline-2 {Human (Homo sapiens) [TaxId: 9606]}	94.35
d2dq5a1	47	Midline-1 {Human (Homo sapiens) [TaxId: 9606]}	93.03
d2d8ua1	51	Ubiquitin ligase trim63 {Human (Homo sapiens) [Tax	89.53
d1frea_	39	Nuclear factor XNF7 {African clawed frog (Xenopus	82.03
d2dida1	40	Tripartite motif-containing protein 39 {Human (Hom	81.42

>d2djaa1 g.43.1.1 (A:8-78) Midline-2 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: B-box zinc-binding domain
superfamily: B-box zinc-binding domain
family: B-box zinc-binding domain
domain: Midline-2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.35  E-value=0.014  Score=42.38  Aligned_cols=50  Identities=16%  Similarity=0.173  Sum_probs=38.4

Q ss_pred             cCcCCcccccccccCCCCcceeEecccccccccccccCCCCCCcccCCCCCccccC
Q 017738           53 SMALPHERMWVSAACENGQATFSCNTDAASLRLSCDADKHLANFLAHHHHARVPAP  108 (366)
Q Consensus        53 ~La~rH~Rv~LCe~C~~~PA~v~C~aD~a~LC~sCD~~iHsaN~la~rH~~RvPv~  108 (366)
                      ++...+.|...|...+..+..+||..|..++|..|....++     ..| .-++|.
T Consensus         3 P~~~~~~r~~~C~~H~~e~l~~fC~~C~~~iC~~C~~~~~H-----k~H-~~~~i~   52 (71)
T d2djaa1           3 PVPDTHLRGITCLDHENEKVNMYCVSDDQLICALCKLVGRH-----RDH-QVASLN   52 (71)
T ss_dssp             CCCCCCSSCCCCSSCSSSCCCEEETTTTEEECHHHHHTSTT-----TTC-CBCCCC
T ss_pred             CCCccccCCCcCcccCCccceeEcCCCCceeccccccCCCC-----CCC-cCcCHH
Confidence            45566888889999888889999999999999999765322     347 555544

>d2dq5a1 g.43.1.1 (A:168-214) Midline-1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: B-box zinc-binding domain
superfamily: B-box zinc-binding domain
family: B-box zinc-binding domain
domain: Midline-1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=93.03  E-value=0.028  Score=38.18  Aligned_cols=35  Identities=23%  Similarity=0.359  Sum_probs=30.7

Q ss_pred             cccccccccCCCCcceeEecccccccccccccC-CC
Q 017738           58 HERMWVSAACENGQATFSCNTDAASLRLSCDAD-KH   92 (366)
Q Consensus        58 H~Rv~LCe~C~~~PA~v~C~aD~a~LC~sCD~~-iH   92 (366)
                      |.|..+|...+..+..+||..|..++|..|... .|
T Consensus         2 ~l~~~~C~~H~~e~l~~yC~~C~~~iC~~C~~~~~H   37 (47)
T d2dq5a1           2 HIRGLMCLEHEDEKVNMYCVTDDQLICALCKLVGRH   37 (47)
T ss_dssp             CCCCCBCSSCTTSBEEEEETTTTEEEEHHHHHTSST
T ss_pred             CccCccchhhCCCcceEEcCCCCccCCccCcCcCCc
Confidence            678889999888888999999999999999765 45

>d2d8ua1 g.43.1.1 (A:8-58) Ubiquitin ligase trim63 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: B-box zinc-binding domain
superfamily: B-box zinc-binding domain
family: B-box zinc-binding domain
domain: Ubiquitin ligase trim63
species: Human (Homo sapiens) [TaxId: 9606]

Probab=89.53  E-value=0.088  Score=36.08  Aligned_cols=31  Identities=16%  Similarity=0.143  Sum_probs=26.1

Q ss_pred             cccccCCCCcceeEecccccccccccccC-CC
Q 017738           62 WVSAACENGQATFSCNTDAASLRLSCDAD-KH   92 (366)
Q Consensus        62 ~LCe~C~~~PA~v~C~aD~a~LC~sCD~~-iH   92 (366)
                      |+|...+..+..+||..|..++|..|... .|
T Consensus         2 p~C~~H~~e~l~~yC~~c~~~iC~~C~~~~~H   33 (51)
T d2d8ua1           2 PMCKEHEDEKINIYCLTCEVPTCSMCKVFGIH   33 (51)
T ss_dssp             CCCSSCTTCCCCSEESSSCCCCCSHHHHSSST
T ss_pred             CCCcccCcCcceEEcCCCCceECccccCcCCc
Confidence            57888777788999999999999999764 45

>d1frea_ g.43.1.1 (A:) Nuclear factor XNF7 {African clawed frog (Xenopus laevis) [TaxId: 8355]}

class: Small proteins
fold: B-box zinc-binding domain
superfamily: B-box zinc-binding domain
family: B-box zinc-binding domain
domain: Nuclear factor XNF7
species: African clawed frog (Xenopus laevis) [TaxId: 8355]

Probab=82.03  E-value=0.49  Score=30.65  Aligned_cols=36  Identities=17%  Similarity=0.366  Sum_probs=25.4

Q ss_pred             cccCCCCcceeEecccccccccccccCC-CCCCcccCCCCCcccc
Q 017738           64 SAACENGQATFSCNTDAASLRLSCDADK-HLANFLAHHHHARVPA  107 (366)
Q Consensus        64 Ce~C~~~PA~v~C~aD~a~LC~sCD~~i-HsaN~la~rH~~RvPv  107 (366)
                      |+..+ .+-.+||..|..++|..|.... |      +.| .-+||
T Consensus         3 C~~H~-e~l~lfC~~d~~~iC~~C~~~~~H------~~H-~v~pi   39 (39)
T d1frea_           3 CSEHD-ERLKLYCKDDGTLSCVICRDSLKH------ASH-NFLPI   39 (39)
T ss_dssp             CCSSC-SSCCCCCCSSSSSSCCTTSSCSSC------TTC-CCCCC
T ss_pred             CcccC-cceeEEcccCCcEeeccCcCCCCc------CCC-cEeeC
Confidence            44443 3568999999999999997643 4      346 55554

>d2dida1 g.43.1.1 (A:8-47) Tripartite motif-containing protein 39 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: B-box zinc-binding domain
superfamily: B-box zinc-binding domain
family: B-box zinc-binding domain
domain: Tripartite motif-containing protein 39
species: Human (Homo sapiens) [TaxId: 9606]

Probab=81.42  E-value=0.33  Score=31.63  Aligned_cols=37  Identities=22%  Similarity=0.435  Sum_probs=27.0

Q ss_pred             ccccCCCCcceeEecccccccccccccC-CCCCCcccCCCCCcccc
Q 017738           63 VSAACENGQATFSCNTDAASLRLSCDAD-KHLANFLAHHHHARVPA  107 (366)
Q Consensus        63 LCe~C~~~PA~v~C~aD~a~LC~sCD~~-iHsaN~la~rH~~RvPv  107 (366)
                      +|+..+ .+-.+||..|...+|..|... .|      +.| .-+||
T Consensus         3 ~C~~H~-e~l~lfC~~d~~~iC~~C~~~~~H------~~H-~v~pi   40 (40)
T d2dida1           3 LCPQHH-EALSLFCYEDQEAVCLICAISHTH------RAH-TVVPL   40 (40)
T ss_dssp             BCTTTC-CBCCEEESSSCSEECHHHHTSSTT------TTS-CEEEC
T ss_pred             cchhhC-ccceEEcccCCcEeeccCcCCCCc------CCC-cEecC
Confidence            566653 457899999999999999765 35      346 65554