Citrus Sinensis ID: 017748
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
|---|
|
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Close Homologs for Annotation Transfer
Close Homologs in SWISS-PROT Database Detected by BLAST 
Original result of BLAST against SWISS-PROT Database
| ID | Alignment graph | Length |
Definition |
RBH(Q2H) |
RBH(H2Q) |
Q cover |
H cover |
Identity |
E-value |
| Query | 366 | 2.2.26 [Sep-21-2011] | |||||||
| Q9SU30 | 413 | F-box protein CPR30 OS=Ar | yes | no | 0.866 | 0.767 | 0.311 | 4e-36 | |
| Q8GXC7 | 427 | F-box/kelch-repeat protei | no | no | 0.937 | 0.803 | 0.285 | 4e-30 | |
| Q9SUY0 | 402 | F-box protein At4g22390 O | no | no | 0.866 | 0.788 | 0.295 | 1e-25 | |
| Q9LIR8 | 364 | F-box/kelch-repeat protei | no | no | 0.904 | 0.909 | 0.281 | 1e-24 | |
| Q9SFC7 | 417 | F-box protein At3g07870 O | no | no | 0.713 | 0.625 | 0.306 | 7e-22 | |
| Q9SJ06 | 396 | F-box protein At2g21930 O | no | no | 0.590 | 0.545 | 0.297 | 3e-18 | |
| Q9LX89 | 445 | F-box protein At5g10340 O | no | no | 0.699 | 0.575 | 0.274 | 1e-15 | |
| Q9M0Q9 | 383 | Putative F-box protein At | no | no | 0.677 | 0.647 | 0.262 | 2e-14 | |
| Q9LU24 | 360 | Putative F-box protein At | no | no | 0.743 | 0.755 | 0.266 | 2e-14 | |
| Q9LPW2 | 416 | Putative F-box/kelch-repe | no | no | 0.759 | 0.668 | 0.229 | 4e-13 |
| >sp|Q9SU30|CPR30_ARATH F-box protein CPR30 OS=Arabidopsis thaliana GN=CPR30 PE=1 SV=2 | Back alignment and function desciption |
|---|
Score = 152 bits (384), Expect = 4e-36, Method: Compositional matrix adjust.
Identities = 112/360 (31%), Positives = 178/360 (49%), Gaps = 43/360 (11%)
Query: 7 LPLDLIVDILIRLPVRSLARFRCVSRSFRSLIDGQDFVNRYVNHSIETNSNLGLFVSVEN 66
+P+D++ DI +RLP ++L R R +S+ LI+ DF+ +++ ++T +L + +
Sbjct: 4 IPMDIVNDIFLRLPAKTLVRCRALSKPCYHLINDPDFIESHLHRVLQTGDHLMILL---- 59
Query: 67 SKWKRRYYSLSFDQYAFDNCLEIDLPLMKNCKFGFIIGSCNGLLALEDSRRNIMLLLNPL 126
+ R YS+ D + D+ +++ P MK + GS NGL+ L +S ++ + NP
Sbjct: 60 -RGALRLYSVDLD--SLDSVSDVEHP-MKRGGPTEVFGSSNGLIGLSNSPTDLA-VFNPS 114
Query: 127 TKRHRVLPTFYRDLSRCVPS----LEGFGFDVGSGDFKLVKILAF--------GKPMNYT 174
T++ LP DL + G G+D S D+K+V+++ F G Y
Sbjct: 115 TRQIHRLPPSSIDLPDGSSTRGYVFYGLGYDSVSDDYKVVRMVQFKIDSEDELGCSFPY- 173
Query: 175 EVAVFSLRVNSWRRIQDFP-------YFW----VTGTCSVFVNGALHWTAALNQDADRND 223
EV VFSL+ NSW+RI+ YF+ V +LHW +
Sbjct: 174 EVKVFSLKKNSWKRIESVASSIQLLFYFYYHLLYRRGYGVLAGNSLHWVLPRRPGLIAFN 233
Query: 224 IIIAFDLKSEEFYQVPLPPIVGIEGYYILLE--ALGGCLCLLCKFDDDDDDRPWDLWVMK 281
+I+ FDL EEF V P V I ++ L GCLCL+C +D D+W+MK
Sbjct: 234 LIVRFDLALEEFEIVRFPEAVANGNVDIQMDIGVLDGCLCLMCNYDQS----YVDVWMMK 289
Query: 282 EYGVNDSWTKLATLLNVGG----GNVKPLVYSRSEDKVLLHAVRGDLCWYDLERHRVRSI 337
EY V DSWTK+ T+ ++PLVYS+ + KVLL L W+DLE ++ ++
Sbjct: 290 EYNVRDSWTKVFTVQKPKSVKSFSYMRPLVYSKDKKKVLLELNNTKLVWFDLESKKMSTL 349
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Component of SCF(ASK-cullin-F-box) E3 ubiquitin ligase complexes, which may mediate the ubiquitination and subsequent proteasomal degradation of target proteins (By similarity). Regulates negatively both salicylic acid (SA)-dependent and SA-independent defense signaling. Arabidopsis thaliana (taxid: 3702) |
| >sp|Q8GXC7|FBK50_ARATH F-box/kelch-repeat protein At3g06240 OS=Arabidopsis thaliana GN=At3g06240 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 132 bits (332), Expect = 4e-30, Method: Compositional matrix adjust.
Identities = 117/410 (28%), Positives = 198/410 (48%), Gaps = 67/410 (16%)
Query: 4 SVQLPLDLIVDILIRLPVRSLARFRCVSRSFRSLIDGQDFVNRYVNHSIETNS----NLG 59
S+ LP ++I +IL+RLP +S+ RFRCVS+ F +L F +++ + S +
Sbjct: 33 SLVLPPEIITEILLRLPAKSIGRFRCVSKLFCTLSSDPGFAKIHLDLILRNESVRSLHRK 92
Query: 60 LFVSVENSKWKRRYYSLSFDQ------------------------------YAFDNCLEI 89
L VS N YSL F+ Y D+ +
Sbjct: 93 LIVSSHN------LYSLDFNSIGDGIRDLAAVEHNYPLKDDPSIFSEMIRNYVGDHLYDD 146
Query: 90 DLPLMK-NCK-----FGFIIGSCNGLLALEDSRRNIMLLLNPLTKRHRVLPTFYR----D 139
++K N K + I+GS NGL+ + + L NP T + LP +R +
Sbjct: 147 RRVMLKLNAKSYRRNWVEIVGSSNGLVCISPGE-GAVFLYNPTTGDSKRLPENFRPKSVE 205
Query: 140 LSRCVPSLEGFGFDVGSGDFKLVKILAFGKPMNYTEVAVFSLRVNSWRRIQDFPYFWVTG 199
R GFGFD + D+KLVK++A + + + +V+SL+ +SWRRI + Y G
Sbjct: 206 YERDNFQTYGFGFDGLTDDYKLVKLVATSEDI--LDASVYSLKADSWRRICNLNYEHNDG 263
Query: 200 --TCSVFVNGALHWTAALNQDADRNDIIIAFDLKSEEFYQVPLPPIVGIEGYY---ILLE 254
T V NGA+HW ++ R +++AFD+++EEF ++P+P + ++
Sbjct: 264 SYTSGVHFNGAIHWVFTESRHNQR--VVVAFDIQTEEFREMPVPDEAEDCSHRFSNFVVG 321
Query: 255 ALGGCLCLLCKFDDDDDDRPWDLWVMKEYGVNDSWTKLATLLNVGGGNVKPLVYSRSEDK 314
+L G LC++ D D D+WVM EYG SW+++ +N+ ++KPL ++++++
Sbjct: 322 SLNGRLCVVNSCYDVHD----DIWVMSEYGEAKSWSRIR--INLLYRSMKPLCSTKNDEE 375
Query: 315 VLLHAVRGDLCWYDLERHRVRSIVEIDDKVRRCDMRTVCVNTLVSPNAHA 364
VLL + GDL Y+ E + ++ K+ V +L+SPN++
Sbjct: 376 VLLE-LDGDLVLYNFETNASSNLGICGVKLSDGFEANTYVESLISPNSYG 424
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Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9SUY0|FB244_ARATH F-box protein At4g22390 OS=Arabidopsis thaliana GN=At4g22390 PE=2 SV=3 | Back alignment and function description |
|---|
Score = 117 bits (293), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 106/359 (29%), Positives = 171/359 (47%), Gaps = 42/359 (11%)
Query: 5 VQLPLDLIVDILIRLPVRSLARFRCVSRSFRSLIDGQDFVNRYVNHSIETNSNLGLFVSV 64
+ P DLI ++ +RL +L + R +S+ SLID +FV+ ++ +ET +L + +
Sbjct: 2 AECPTDLINEMFLRLRATTLVKCRVLSKPCFSLIDSPEFVSSHLRRRLETGEHLMILL-- 59
Query: 65 ENSKWKRRYYSLSFDQYAFDNCLEIDLPLMKNCKFGFIIGSCNGLLALEDSRRNIMLLLN 124
+ R ++ D + +N +I PL F + GS NG++ L +S ++ + N
Sbjct: 60 ---RGPRLLRTVELD--SPENVSDIPHPLQAG-GFTEVFGSFNGVIGLCNSPVDLA-IFN 112
Query: 125 PLTKRHRVLPTF-----YRDLSRCVPSLEGFGFDVGSGDFKLVKI----LAFGKPM--NY 173
P T++ LP RD++R G G+D DFK+V+I L GK
Sbjct: 113 PSTRKIHRLPIEPIDFPERDITREY-VFYGLGYDSVGDDFKVVRIVQCKLKEGKKKFPCP 171
Query: 174 TEVAVFSLRVNSWRRIQ---DFPYFWVT--------GTCSVFVNGALHWTAALNQDADRN 222
EV VFSL+ NSW+R+ +F W++ V VN LHW Q
Sbjct: 172 VEVKVFSLKKNSWKRVCLMFEFQILWISYYYHLLPRRGYGVVVNNHLHWILPRRQGVIAF 231
Query: 223 DIIIAFDLKSEEFYQVPLPPIVGIEGYYILLEALGGCLCLLCKFDDDDDDRPWDLWVMKE 282
+ II +DL S++ + P + IE + + L GC+CL+C D+ D+WV+KE
Sbjct: 232 NAIIKYDLASDDIGVLSFPQELYIED-NMDIGVLDGCVCLMCY----DEYSHVDVWVLKE 286
Query: 283 YGVNDSWTKLATLLNVGGGN----VKPLVYSRSEDKVLLHAVR-GDLCWYDLERHRVRS 336
Y SWTKL + ++PL+ S+ K+LL +L W+DLE + +
Sbjct: 287 YEDYKSWTKLYRVPKPESVESVEFIRPLICSKDRSKILLEINNAANLMWFDLESQSLTT 345
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Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9LIR8|FBK67_ARATH F-box/kelch-repeat protein At3g23880 OS=Arabidopsis thaliana GN=At3g23880 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 114 bits (284), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 105/373 (28%), Positives = 171/373 (45%), Gaps = 42/373 (11%)
Query: 7 LPLDLIVDILIRLPVRSLARFRCVSRSFRSLIDGQDFVNRYVNHSIETNSNLGLFVSVEN 66
LPL+++ +IL+RLPV+SL RF+CV S+RSLI F ++ L L S
Sbjct: 14 LPLEMMEEILLRLPVKSLTRFKCVCSSWRSLISETLFALKHA---------LILETSKAT 64
Query: 67 SKWKRRYYSLSFDQYAFDNCL-------------EIDLPLMKNCKFGFIIGSCNGLLALE 113
+ K Y ++ +Y +C E D L+ + ++G+C+GL+
Sbjct: 65 TSTKSPYGVITTSRYHLKSCCIHSLYNASTVYVSEHDGELLGR-DYYQVVGTCHGLVCFH 123
Query: 114 DSRRNIMLLLNPLTKRHRVLPTFYRDLS--RCVPSLEGFGFDVGSGDFKLVKILAFGKPM 171
+ L NP K + L + + S CV + GFG+D D+K+V +L +
Sbjct: 124 VDYDKSLYLWNPTIKLQQRLSSSDLETSDDECVVTY-GFGYDESEDDYKVVALLQQRHQV 182
Query: 172 NYTEVAVFSLRVNSWRRIQDFPYFWVTGTCS---VFVNGALHWTAALNQDADRNDIIIAF 228
E ++S R WR FP V S +++NG L+ + + II++
Sbjct: 183 K-IETKIYSTRQKLWRSNTSFPSGVVVADKSRSGIYINGTLN---WAATSSSSSWTIISY 238
Query: 229 DLKSEEFYQVPLPPIVGIEGYYILLEALGGCLCLLCKFDDDDDDRPWDLWVMKEYGVNDS 288
D+ +EF ++P P G + + L L GCL ++C + D+WVMKE+G S
Sbjct: 239 DMSRDEFKELPGPVCCGRGCFTMTLGDLRGCLSMVCYCKGANA----DVWVMKEFGEVYS 294
Query: 289 WTKLATLLNVGGGNVKPLVYSRSEDKVLLHAVRGDLCWYDLERHRVRSIVEIDDKVRRCD 348
W+KL ++ + V+PL S+ V+L R L Y+ R + + + C
Sbjct: 295 WSKLLSIPGL-TDFVRPLWI--SDGLVVLLEFRSGLALYNCSNGRFH--YPVSNSISGCR 349
Query: 349 MRTVCVNTLVSPN 361
V + T+VSPN
Sbjct: 350 DAKVYLKTMVSPN 362
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Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9SFC7|FB135_ARATH F-box protein At3g07870 OS=Arabidopsis thaliana GN=At3g07870 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 105 bits (261), Expect = 7e-22, Method: Compositional matrix adjust.
Identities = 99/323 (30%), Positives = 140/323 (43%), Gaps = 62/323 (19%)
Query: 6 QLPLDLIVDILIRLPVRSLARFRCVSRSFRSLIDGQDFVNRYVNHSIET----------- 54
LP D+I DI RLP+ S+AR V RS+RS++ ++ + +
Sbjct: 27 SLPEDIIADIFSRLPISSIARLMFVCRSWRSVLTQHGRLSSSSSSPTKPCLLLHCDSPIR 86
Query: 55 NSNLGLFVSVENSKWKRRYYSLSFDQYAFDNCLEIDLPLMKNCKFGFIIGSCNGLLALED 114
N L +S E + K + ++L F + E D ++GSCNGLL L D
Sbjct: 87 NGLHFLDLSEEEKRIKTKKFTLRFAS----SMPEFD-----------VVGSCNGLLCLSD 131
Query: 115 SRRNIMLLL-NPLTKRHRVLP---TFYRDLSRCVPSLEGFGFDVGSGDFKLVKILAF-GK 169
S N L L NP T LP Y D GFGF + ++K++KI+ F G
Sbjct: 132 SLYNDSLYLYNPFTTNSLELPECSNKYHDQELVF----GFGFHEMTKEYKVLKIVYFRGS 187
Query: 170 PMN--------------YTEVAVFSLRVN------SWRRIQDFPYFWVTGTCSVFVNGAL 209
N +EV + +L SWR + PY +V + VNG L
Sbjct: 188 SSNNNGIYRGRGRIQYKQSEVQILTLSSKTTDQSLSWRSLGKAPYKFVKRSSEALVNGRL 247
Query: 210 HW-TAALNQDADRNDIIIAFDLKSEEFYQVPLPPIVGIEGYYILLEALGGCLCLLCKFDD 268
H+ T DR ++FDL+ EEF ++P P G+ L L GCLC + +
Sbjct: 248 HFVTRPRRHVPDRK--FVSFDLEDEEFKEIPKPDCGGLNRTNHRLVNLKGCLCAVVYGNY 305
Query: 269 DDDDRPWDLWVMKEYGVNDSWTK 291
D+WVMK YGV +SW K
Sbjct: 306 GK----LDIWVMKTYGVKESWGK 324
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Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9SJ06|FB115_ARATH F-box protein At2g21930 OS=Arabidopsis thaliana GN=At2g21930 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 92.8 bits (229), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 75/252 (29%), Positives = 123/252 (48%), Gaps = 36/252 (14%)
Query: 4 SVQLPLDLIVDILIRLPVRSLARFRCVSRSFRSLIDGQDFVNRY-VNHSIETNS------ 56
SVQ+P DLI +IL RLPV++LARF VS+ + S+I +DF+ Y +N S S
Sbjct: 22 SVQIPFDLIPEILKRLPVKTLARFLSVSKEYTSIIRNRDFMKSYLINSSTRPQSLIFTIA 81
Query: 57 --NLGLFVSV----ENSKWKRRYYSLSFDQYAFDNCLEIDLPLMKNCKFGFIIGSCNGLL 110
+ F S+ E++ + Y + NC + L G I L
Sbjct: 82 GGGIHCFFSLIDQGESTSSSKPTYLM--------NCPHLQLKTFAPSVHGLICHGPPSTL 133
Query: 111 ALEDSRRNIMLLLNPLTKRHRVLPTFYRDLSRCVPSLEGFGFDVGSGDFKLVKIL----A 166
+ R +++ NP T+R +LP + C+ G+D GD+K++ ++
Sbjct: 134 IVSSPR---LIVSNPSTRRSIILPKIDAN-HECI--YHHMGYDPIDGDYKVLCMMKGMHV 187
Query: 167 FGKPMNYTEVAVFSLRV-NSWRRIQDFPYFWV--TGTCSVFVNGALHWTAALNQDADRND 223
+ + E+ VF+LR NSWR ++DFP + T + +NG L++ A L D N
Sbjct: 188 YQRRYLAKELQVFTLRKGNSWRMVEDFPPHCLCHEDTPDLCINGVLYYVAML--DTASNH 245
Query: 224 IIIAFDLKSEEF 235
+++FD++SE+F
Sbjct: 246 AVMSFDVRSEKF 257
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Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9LX89|FB255_ARATH F-box protein At5g10340 OS=Arabidopsis thaliana GN=At5g10340 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 84.3 bits (207), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 80/291 (27%), Positives = 135/291 (46%), Gaps = 35/291 (12%)
Query: 2 ETSVQ--LPLDLI-VDILIRLPVRSLARFRCVSRSFRSLIDGQDFVNRYVNHSIETNSNL 58
ETS++ LP D+I I++RL V++L +F+ VS+ + S I F R + H + +S
Sbjct: 62 ETSMEELLPHDVIEYHIMVRLDVKTLLKFKSVSKQWMSTIQSPSFQERQLIHHLSQSSGD 121
Query: 59 G--LFVSVENSKWKRRYYSLS-FDQY----AFDNCLEIDLPLMKNCKFGFIIG-SCNGLL 110
L VS+ + +++ S+S F+ + + +P K F+ SC+GL+
Sbjct: 122 PHVLLVSLYDPCARQQDPSISSFEALRTFLVESSAASVQIPTPWEDKLYFVCNTSCDGLI 181
Query: 111 ALEDSRRNIMLLLNPLTKRHRVLPTFYRDLS-----------RCVPSLEGFGFDVGSGDF 159
L +++NP T+ HR P L + GFG D SG +
Sbjct: 182 CLFSFYELPSIVVNPTTRWHRTFPKCNYQLVAADKGERHECFKVACPTPGFGKDKISGTY 241
Query: 160 KLVKILAFG------KPMNYTEVAVFSLRVNSWRRI-QDFPYFWVTGTCSVFVNGALHWT 212
K V + KP T VF N+WR + P+ + V+V+G+LHW
Sbjct: 242 KPVWLYNSAELDLNDKP---TTCEVFDFATNAWRYVFPASPHLILHTQDPVYVDGSLHWF 298
Query: 213 AALNQDADRNDIIIAFDLKSEEFYQVPLPPIVGI-EGYYILLEALGGCLCL 262
AL+ + + ++++ DL SE F + P + + + YYI++ LG LC+
Sbjct: 299 TALSHEGET--MVLSLDLHSETFQVISKAPFLNVSDEYYIVMCNLGDRLCV 347
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Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9M0Q9|FB223_ARATH Putative F-box protein At4g09190 OS=Arabidopsis thaliana GN=At4g09190 PE=4 SV=1 | Back alignment and function description |
|---|
Score = 80.5 bits (197), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 76/289 (26%), Positives = 131/289 (45%), Gaps = 41/289 (14%)
Query: 6 QLPLDLIVDILIRLPVRSLARFRCVSRSFRSLIDGQDFVNRYVNHSIET--------NSN 57
+PLDLIV+I+ LP +S+ RFR VS+ + S+I DF + V S+ + +
Sbjct: 21 HIPLDLIVEIVSSLPAKSIVRFRSVSKLWSSIITTPDFTSSVVTRSLSSRPCVLLIFQKH 80
Query: 58 LGLFVSVENSKWKRRYYSLSFDQYAFDNCLEIDLPLMKNCKFGFIIGSCNGLLALEDSRR 117
LF K+ ++ QY N + ++ C+ S +GL+ LE S
Sbjct: 81 DKLFFFASPVHQKKTCPNVENFQYTIPNNGK-----LQRCE------SVHGLIYLETS-T 128
Query: 118 NIMLLLNPLTKRHRVLPTFYRDLSRCVPSLEGF-GFDVGSGDFKLVKILAFGKPMNYTEV 176
N+M + NP+TK LP R L GF G+D +G +K++ IL ++
Sbjct: 129 NVMFIRNPITKSFFTLPKLDSKEGR---PLTGFLGYDPINGKYKVLCILK-----ERNKI 180
Query: 177 AVFSLRVN-SWRRIQD--FPYFWVTGTCSVFVNGALHWTAALNQDADRNDIIIAFDLKSE 233
+ +L SWR + ++ VTG ++G +++ + + I++FDL+SE
Sbjct: 181 GILTLGAQESWRILSKGFLSHYKVTGYAKC-IDGVIYYEGSFGDGLRQELAIMSFDLRSE 239
Query: 234 EFYQVPLPPIVGI-------EGYYILLEALGGCLCLLCKFDDDDDDRPW 275
+F + P I EG L+ ++ + L +D D+ + W
Sbjct: 240 KFSLIKHPKKSSIATCWSSYEGRLALVSSIASGVSLWI-LEDADNHKQW 287
|
Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9LU24|FB145_ARATH Putative F-box protein At3g16210 OS=Arabidopsis thaliana GN=At3g16210 PE=4 SV=1 | Back alignment and function description |
|---|
Score = 80.1 bits (196), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 82/308 (26%), Positives = 148/308 (48%), Gaps = 36/308 (11%)
Query: 7 LPLDLIVDILIRLPVRSLARFRCVSRSFRSLIDGQDFVNRYVNHSIETNSNLGLFVSVEN 66
LP +L ++IL+RL ++ LARFRCV +++R LI+ F Y + S FVS
Sbjct: 5 LPEELAIEILVRLSMKDLARFRCVCKTWRDLINDPGFTETYRDMSP------AKFVSF-- 56
Query: 67 SKWKRRYYSLSFDQYAFDNCLEIDLPLMKN-CKFGFIIGSCNGLLALEDSRRNIMLLLNP 125
+ + +Y L + ++D PL ++ + C+G L + + + +++ NP
Sbjct: 57 --YDKNFYMLDVEGKHPVITNKLDFPLDQSMIDESTCVLHCDGTLCVT-LKNHTLMVWNP 113
Query: 126 LTKRHRVLPT--FYRDLSRCVPSLEGFGFDVGSGDFKLVKILAFGKPMNYTEVAVFSLRV 183
+K+ +++P Y+D ++ GFG+D D+K+V F ++ + VF R
Sbjct: 114 FSKQFKIVPNPGIYQD-----SNILGFGYDPVHDDYKVV---TFIDRLDVSTAHVFEFRT 165
Query: 184 NSWR---RIQDFPYFWVTGTCSVFVNGALHWTAALNQDADRNDIIIAFDLKSEEFYQVPL 240
SW RI +P + F++ L+W A ADR I+ F+L + E+ ++PL
Sbjct: 166 GSWGESLRIS-YPDWHYRDRRGTFLDQYLYW-IAYRSSADR--FILCFNLSTHEYRKLPL 221
Query: 241 PPIVGIEGYYILLEALGGCLCLLCKFDDDDDDRPWDLWVMKEYGVNDSWTKLATLLNVGG 300
P V +G + LG LC + + + + VM++ G SW+K+ +L
Sbjct: 222 P--VYNQG--VTSSWLGVTSQKLCITEYEMCKKEIRISVMEKTG---SWSKIISLSMSSF 274
Query: 301 GNVKPLVY 308
+V+ +Y
Sbjct: 275 ISVQDRIY 282
|
Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9LPW2|FBK2_ARATH Putative F-box/kelch-repeat protein At1g12870 OS=Arabidopsis thaliana GN=At1g12870 PE=4 SV=2 | Back alignment and function description |
|---|
Score = 75.9 bits (185), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 73/318 (22%), Positives = 144/318 (45%), Gaps = 40/318 (12%)
Query: 1 METSVQLPLDLIVDILIRLPVRSLARFRCVSRSFRSLIDGQDFVNRYVNHSIETNSNLGL 60
M S LP D++ +I ++LPV++L RF+ +S+ +RS ++ F R++ + ++ +
Sbjct: 27 MIASSSLPDDVVEEIFLKLPVKALMRFKSLSKQWRSTLESCYFSQRHLKIAERSHVDHPK 86
Query: 61 FVSVENSKW----KRRYYSLSFDQYAFDNCLEIDLPLMKNCKFGFIIGSCNGLLALEDSR 116
V + KW + + ++S + +F + + P + + SC+G+ + +
Sbjct: 87 -VMIITEKWNPDIEISFRTISLESVSFLSSALFNFPRGFHHPI-YASESCDGIFCIHSPK 144
Query: 117 RNIMLLLNPLTKRHRVLPT--FYRDLSRCVPSLEGFGFDVGSGDFKLVKILAFGKPMNY- 173
+ ++NP T+ R LP F + + P+L+ D V LAF K +Y
Sbjct: 145 TQDIYVVNPATRWFRQLPPARFQIFMHKLNPTLDTL------RDMIPVNHLAFVKATDYK 198
Query: 174 ------------TEVAVFSLRVNSWRRIQDFPYFWV-TGTCSVFVNGALHW-TAALNQDA 219
T+ VF + N+WR + P + + NG L+W T N +
Sbjct: 199 LVWLYNSDASRVTKCEVFDFKANAWRYLTCIPSYRIYHDQKPASANGTLYWFTETYNAEI 258
Query: 220 DRNDIIIAFDLKSEEFYQVPLPPIVG-IEGYYILLEALGGCLCLLCKFDDDDDDR-PWDL 277
+IA D+ +E F +P P ++ E +I + + LC+ ++ + D + ++
Sbjct: 259 K----VIALDIHTEIFRLLPKPSLIASSEPSHIDMCIIDNSLCM---YETEGDKKIIQEI 311
Query: 278 WVMKEYGVNDSWTKLATL 295
W +K D+W K+ T+
Sbjct: 312 WRLK--SSEDAWEKIYTI 327
|
Arabidopsis thaliana (taxid: 3702) |
Close Homologs in the Non-Redundant Database Detected by BLAST
Original result of BLAST against Nonredundant Database
| GI | Alignment Graph | Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 366 | ||||||
| 224089629 | 396 | f-box family protein [Populus trichocarp | 0.871 | 0.805 | 0.390 | 4e-51 | |
| 255583943 | 389 | ubiquitin-protein ligase, putative [Rici | 0.923 | 0.868 | 0.385 | 2e-50 | |
| 356532341 | 392 | PREDICTED: F-box protein CPR30-like [Gly | 0.937 | 0.875 | 0.345 | 4e-47 | |
| 356555728 | 394 | PREDICTED: F-box protein CPR30-like [Gly | 0.937 | 0.870 | 0.349 | 7e-46 | |
| 357448231 | 388 | F-box protein [Medicago truncatula] gi|3 | 0.923 | 0.871 | 0.336 | 3e-45 | |
| 357448237 | 418 | F-box protein [Medicago truncatula] gi|3 | 0.923 | 0.808 | 0.344 | 5e-44 | |
| 357447909 | 409 | F-box protein [Medicago truncatula] gi|3 | 0.931 | 0.833 | 0.318 | 4e-43 | |
| 357448235 | 704 | F-box protein [Medicago truncatula] gi|3 | 0.928 | 0.482 | 0.322 | 1e-42 | |
| 357448241 | 439 | F-box protein [Medicago truncatula] gi|3 | 0.942 | 0.785 | 0.342 | 4e-42 | |
| 356562593 | 382 | PREDICTED: F-box protein CPR30-like [Gly | 0.923 | 0.884 | 0.336 | 6e-42 |
| >gi|224089629|ref|XP_002308787.1| f-box family protein [Populus trichocarpa] gi|222854763|gb|EEE92310.1| f-box family protein [Populus trichocarpa] | Back alignment and taxonomy information |
|---|
Score = 208 bits (529), Expect = 4e-51, Method: Compositional matrix adjust.
Identities = 136/348 (39%), Positives = 202/348 (58%), Gaps = 29/348 (8%)
Query: 7 LPLDLIVDILIRLPVRSLARFRCVSRSFRSLIDGQDFVNRYVNHSIETNSNLGLFVSVEN 66
LPL++I +IL RLP + L R VS+ + +LIDG +FV ++ HS++T+SNL + + +
Sbjct: 4 LPLEMIAEILCRLPAKELLCCRSVSKPWCALIDGPNFVKLHLKHSMDTSSNLYIILRTTS 63
Query: 67 SKWKRRYYSLSFDQ-YAFDNCL---EIDLPLMKNCKFGFIIGSCNGLLALEDSRRNIMLL 122
+ + F+Q ++C+ E++ PLM ++GS NGLL + + +I +
Sbjct: 64 -----HVHYMDFEQNLVLNDCVTLKELNHPLMCYNHGIKVLGSVNGLLCISNVVDDIA-V 117
Query: 123 LNPLTKRHRVLPTFYRDLSR------CVPSLEGFGFDVGSGDFKLVKILAF---GKPMNY 173
NP T++HRV+P +L R C + GFG+D D+KLV+I F GK
Sbjct: 118 WNPSTRKHRVVPFLPIELKRYFGTKSCSVYVFGFGYDSVRDDYKLVRIAQFGGGGKRSFE 177
Query: 174 TEVAVFSLRVNSWRRIQDFPY-FWVTGTCSVFVNGALHWTAALNQDADRNDIIIAFDLKS 232
+EV V+SLR SWRRI D PY G VF NGALHW N +++ +I++A DL
Sbjct: 178 SEVKVYSLRKQSWRRIGDMPYCVHYPGANGVFANGALHWVVGENPESNVANIVVALDLGV 237
Query: 233 EEFYQVPLPPIVGIEGYYILLEALGGCLCLLCKFDDDDDDRPWDLWVMKEYGVNDSWTKL 292
E++ +V L P + +YI L L GCLC L F + D+W+MKEYGV +SWTKL
Sbjct: 238 EDYREV-LQPEYKDKNFYIDLGVLRGCLCFLANFLGER----VDVWMMKEYGVKESWTKL 292
Query: 293 ATLLN--VGG--GNVKPLVYSRSEDKVLLHAVRGDLCWYDLERHRVRS 336
++ V G ++KPL YS+S D+VL+ DLCWYDL+R +V++
Sbjct: 293 FSVAQYEVIGFLRSLKPLAYSKSGDEVLIEHDNLDLCWYDLKRKQVKN 340
|
Source: Populus trichocarpa Species: Populus trichocarpa Genus: Populus Family: Salicaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|255583943|ref|XP_002532719.1| ubiquitin-protein ligase, putative [Ricinus communis] gi|223527546|gb|EEF29668.1| ubiquitin-protein ligase, putative [Ricinus communis] | Back alignment and taxonomy information |
|---|
Score = 206 bits (523), Expect = 2e-50, Method: Compositional matrix adjust.
Identities = 145/376 (38%), Positives = 207/376 (55%), Gaps = 38/376 (10%)
Query: 6 QLPLDLIVDILIRLPVRSLARFRCVSRSFRSLIDGQDFVNRYVNHSIETNSNLGLFVSVE 65
LPL++I +IL RL + L RCVS+ +R+LID F+ ++NHSIE+ NL + +
Sbjct: 3 NLPLEMIAEILCRLTAKKLLCCRCVSKRWRTLIDSPTFIYLHLNHSIESPCNLSIILK-- 60
Query: 66 NSKWKRRYYSLSFDQYAFDNCLEIDLPLMKNCKFGFIIGSCNGLLALEDSRRNIMLLLNP 125
YSLSFD DN +D PLM I+GSCNGLL + + +I L NP
Sbjct: 61 ----SSELYSLSFD--LLDNIQPLDHPLMCYNHGVKILGSCNGLLCICNIVDDIA-LWNP 113
Query: 126 LTKRHRVLPTFYRDLSR------CVPSLEGFGFDVGSGDFKLVKILAFG---KPMNYTEV 176
+ HRV+P +L R C S+ GFG+D+ + D+KLV+I FG + +EV
Sbjct: 114 SIRAHRVVPYLPVELKRYFGMCSCRVSVFGFGYDLSNDDYKLVRIAQFGGVDRKSFESEV 173
Query: 177 AVFSLRVNSWRRIQDFPY-FWVTGTCSVFVNGALHWTAALNQDADRNDIIIAFDLKSEEF 235
VFSLR NSWRRI D PY G ++ NGALHW + + D+ D I+A DL E++
Sbjct: 174 KVFSLRKNSWRRIADMPYCVLYPGENGIYANGALHWLVSQDPDSTVADTIVALDLGVEDY 233
Query: 236 YQVPLPPIVGIEGYYILLEALGGCLCLLCKFDDDDDDRPWDLWVMKEYGVNDSWTKLATL 295
+ VP P V + + + L GCL LL + D+WVM+EY V +SW+KL ++
Sbjct: 234 HVVPKPEFVDMNC-NMGVGVLQGCLSLLAYARSER----VDVWVMEEYMVKESWSKLFSV 288
Query: 296 --LNVGG--GNVKPLVYSRSEDKVLLHAVRGDLCWYDLERHRVRSI----VEIDDKVRRC 347
L V G ++KPL YS+S ++VL+ +L WYDL+R V ++ V I +
Sbjct: 289 ARLEVIGILRSLKPLAYSKSGNEVLIEHDNVNLFWYDLKRKEVVNVWIQGVPITFEAE-- 346
Query: 348 DMRTVCVNTLVSPNAH 363
+CV +LV NA+
Sbjct: 347 ----ICVGSLVPLNAN 358
|
Source: Ricinus communis Species: Ricinus communis Genus: Ricinus Family: Euphorbiaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|356532341|ref|XP_003534732.1| PREDICTED: F-box protein CPR30-like [Glycine max] | Back alignment and taxonomy information |
|---|
Score = 195 bits (495), Expect = 4e-47, Method: Compositional matrix adjust.
Identities = 129/373 (34%), Positives = 199/373 (53%), Gaps = 30/373 (8%)
Query: 4 SVQLPLDLIVDILIRLPVRSLARFRCVSRSFRSLIDGQDFVNRYVNHSIETNSNLGLFVS 63
S LP +++ DIL RLP +SL RFR S+S++SLID Q F + +++ S+ SN L +
Sbjct: 2 SDHLPREVVTDILSRLPAKSLLRFRSTSKSWKSLIDSQHFNSVHLSRSLSLTSNTTLILR 61
Query: 64 VENSKWKRRYYSLSFDQYAFDNCLEIDLPLMKNCKFGFIIGSCNGLLALEDSRRNIMLLL 123
+++ ++ + +L D L ++ PLM ++GSCNGLL + + +I
Sbjct: 62 LDSDLYQTNFPTL-------DPPLFLNHPLMCYSNNITLLGSCNGLLCISNVADDIA-FW 113
Query: 124 NPLTKRHRVLPT-------FYRDLSRCVPSLEGFGFDVGSGDFKLVKILAFGKPMNY--- 173
NP ++HR+LP+ + D + + GFGFD S D+KLV+I F +
Sbjct: 114 NPSLRQHRILPSLPLPRRRLHPDTTLFAARVYGFGFDHTSPDYKLVRISYFVDLQDRSFD 173
Query: 174 TEVAVFSLRVNSWRRIQDFPYFWVTG-TCSVFVNGALHWTAALNQDADRNDIIIAFDLKS 232
++V +++LR N+W+ + PY T VFV +LHW + D+ D+I+AFDL
Sbjct: 174 SQVKLYTLRANAWKTLPSMPYALCCARTMGVFVGNSLHWVVTRKLEPDQPDLIVAFDLTH 233
Query: 233 EEFYQVPLPPIVGI-EGYYILLEALGGCLCLLCKFDDDDDDRPWDLWVMKEYGVNDSWTK 291
E F ++PLP G+ G+ I + LG LC+ F + D+WVM+EY DSW K
Sbjct: 234 EIFTELPLPDTGGVGGGFEIDVALLGDSLCMTVNFHNSK----MDVWVMREYNRGDSWCK 289
Query: 292 LATLLNV----GGGNVKPLVYSRSEDKVLLHAVRGDLCWYDLERHRVRSIVEIDDKVRRC 347
L TL ++PL YS +KVLL R LCWYDL + V ++V I +
Sbjct: 290 LFTLEESRELRSFKCLRPLGYSSDGNKVLLEHDRKRLCWYDLGKKEV-TLVRIQG-LPNL 347
Query: 348 DMRTVCVNTLVSP 360
+ +C+ TLV+P
Sbjct: 348 NEAMICLGTLVTP 360
|
Source: Glycine max Species: Glycine max Genus: Glycine Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|356555728|ref|XP_003546182.1| PREDICTED: F-box protein CPR30-like [Glycine max] | Back alignment and taxonomy information |
|---|
Score = 190 bits (483), Expect = 7e-46, Method: Compositional matrix adjust.
Identities = 130/372 (34%), Positives = 197/372 (52%), Gaps = 29/372 (7%)
Query: 4 SVQLPLDLIVDILIRLPVRSLARFRCVSRSFRSLIDGQDFVNRYVNHSIETNSNLGLFVS 63
S LP +++ +IL RLPVRSL RFR S+S++SLID Q ++ S+ SN L +
Sbjct: 2 SDHLPREVLTEILSRLPVRSLLRFRSTSKSWKSLIDSQHLNWLHLTRSLTLTSNTSLILR 61
Query: 64 VENSKWKRRYYSLSFDQYAFDNCLEIDLPLMKNCKFGFIIGSCNGLLALEDSRRNIMLLL 123
V++ ++ + +L D + ++ PLM ++GSCNGLL + + +I
Sbjct: 62 VDSDLYQTNFPTL-------DPPVSLNHPLMCYSNSITLLGSCNGLLCISNVADDIA-FW 113
Query: 124 NPLTKRHRVLPTF------YRDLSRCVPSLEGFGFDVGSGDFKLVKILAFGKPMNY---T 174
NP ++HR+LP + D + + GFGFD + D+KLV+I F + +
Sbjct: 114 NPSLRQHRILPYLPVPRRRHPDTTLFAARVCGFGFDHKTRDYKLVRISYFVDLHDRSFDS 173
Query: 175 EVAVFSLRVNSWRRIQDFPY-FWVTGTCSVFVNGALHWTAALNQDADRNDIIIAFDLKSE 233
+V +++LR N+W+ + PY T VFV +LHW + D+ D+IIAFDL +
Sbjct: 174 QVKLYTLRANAWKTLPSLPYALCCARTMGVFVGNSLHWVVTRKLEPDQPDLIIAFDLTHD 233
Query: 234 EFYQVPLPPIVGIE-GYYILLEALGGCLCLLCKFDDDDDDRPWDLWVMKEYGVNDSWTKL 292
F ++PLP G++ G+ I L LGG LC+ F D+WVM+EY DSW K+
Sbjct: 234 IFRELPLPDTGGVDGGFEIDLALLGGSLCMTVNFHKTR----IDVWVMREYNRRDSWCKV 289
Query: 293 ATLLNVGGGN----VKPLVYSRSEDKVLLHAVRGDLCWYDLERHRVRSIVEIDDKVRRCD 348
TL V+PL YS +KVLL R L WYDLE+ V ++V+I + +
Sbjct: 290 FTLEESREMRSLKCVRPLGYSSDGNKVLLEHDRKRLFWYDLEKKEV-ALVKIQG-LPNLN 347
Query: 349 MRTVCVNTLVSP 360
+C+ TLV P
Sbjct: 348 EAMICLGTLVPP 359
|
Source: Glycine max Species: Glycine max Genus: Glycine Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|357448231|ref|XP_003594391.1| F-box protein [Medicago truncatula] gi|355483439|gb|AES64642.1| F-box protein [Medicago truncatula] | Back alignment and taxonomy information |
|---|
Score = 189 bits (479), Expect = 3e-45, Method: Compositional matrix adjust.
Identities = 129/383 (33%), Positives = 192/383 (50%), Gaps = 45/383 (11%)
Query: 7 LPLDLIVDILIRLPVRSLARFRCVSRSFRSLIDGQDFVNRYVNHSIETNSNLGLFVSVEN 66
LP +++ +I RLPV+SL RFR S+S +SLID F+N ++ +S+ N NL L
Sbjct: 4 LPPEILSEIFSRLPVKSLLRFRSTSKSLKSLIDSHKFINLHLQNSL--NFNLIL------ 55
Query: 67 SKWKRRYYSLSFDQYAFDNCLEIDLPLMKNCKFGFIIGSCNGLLALEDSR--------RN 118
+ K Y L F + ++ P + + ++GSCNGLLA+ + N
Sbjct: 56 -RRKTDLYHLHFPN--LTTAVPLNHPFIHHSNNIALLGSCNGLLAISNGEIAFTNPYSAN 112
Query: 119 IMLLLNPLTKRHRVLPTF---------YRDLSRCVPSLEGFGFDVGSGDFKLVKILAFGK 169
+ NP ++HR++P +++ CV GFGFD S D+KL++I F
Sbjct: 113 EIAFCNPTIRKHRIIPYLPLPIPSRSQSDNIALCV---HGFGFDSLSADYKLLRISWFVD 169
Query: 170 PMNYT----EVAVFSLRVNSWRRIQDFPY-FWVTGTCSVFVNGALHWTAALNQDADRNDI 224
++T + +FS + NSW+ + D PY + T T VFV +LHW D + +
Sbjct: 170 LQHHTFDNSHLTLFSSKTNSWKTLPDMPYILYYTLTMGVFVENSLHWIMTPKLDGLQPCL 229
Query: 225 IIAFDLKSEEFYQVPLP-PIVGIEGYYILLEALGGCLCLLCKFDDDDDDRPWDLWVMKEY 283
I AF+L E F +VPLP I+ E + I + LGGCLCL + D+WVMKEY
Sbjct: 230 IAAFNLSLEIFNEVPLPDEIISNESFKISIAVLGGCLCLPVNYQTTK----IDVWVMKEY 285
Query: 284 GVNDSWTKLATLLNVGGGNVKPLVYSRSEDKVLLHAVRGDLCWYDLERHRVRSIVEIDDK 343
G DSW K TL+ ++PL Y KVLL L WYDL+ ++ + +
Sbjct: 286 GCRDSWCKHFTLVKSCLDFLRPLGYCSDGSKVLLEIDCKKLFWYDLKSEQISYV----EG 341
Query: 344 VRRCDMRTVCVNTLVSPNAHAGN 366
+ D +CV +LVSP+ N
Sbjct: 342 IPNLDDTMICVGSLVSPSLPVDN 364
|
Source: Medicago truncatula Species: Medicago truncatula Genus: Medicago Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|357448237|ref|XP_003594394.1| F-box protein [Medicago truncatula] gi|355483442|gb|AES64645.1| F-box protein [Medicago truncatula] | Back alignment and taxonomy information |
|---|
Score = 184 bits (468), Expect = 5e-44, Method: Compositional matrix adjust.
Identities = 139/404 (34%), Positives = 202/404 (50%), Gaps = 66/404 (16%)
Query: 4 SVQLPLDLIVDILIRLPVRSLARFRCVSRSFRSLIDGQDFVNRYVNHSIETNSNLGLFVS 63
+ +LP +++ +IL RLPV SL RFR S+SF+SLID F+N ++ +S N +L L
Sbjct: 2 AAELPPEILTEILSRLPVISLLRFRSTSKSFKSLIDSNKFINLHLRNS--PNQSLIL--- 56
Query: 64 VENSKWKRRYYSLSFDQYAFD----------------NCLEIDLPLMKNCKFGFIIGSCN 107
++K Y + D D N ID P N +IGSCN
Sbjct: 57 ----RFKFDIYQIKIDDDFSDPDTSMLLFPHNHPFTGNSTNID-PFKGNNTIT-LIGSCN 110
Query: 108 GLLAL--------EDSRRNIMLLLNPLTKRHRVLPTFYRDLSRCVPS---------LEGF 150
GLLA+ + N + + NP T++HR++P + + S + GF
Sbjct: 111 GLLAMSHGVIAFTHPNAPNEITIWNPNTRKHRIIPFLPLPIPNILQSDNPNRGCLCVHGF 170
Query: 151 GFDVGSGDFKLVKI---LAFGKPMNYTEVAVFSLRVNSWRRIQDFPY-FWVTGTCSVFV- 205
GFD SGD+KL++I L P V +FSL+ NSW+ I + PY + T VFV
Sbjct: 171 GFDSVSGDYKLLRISNLLDLQNPFYDPHVRLFSLKTNSWKVIPNLPYSLYYALTMGVFVE 230
Query: 206 -NGALHWTAALNQDADRNDIIIAFDLKSEEFYQVPLPPIVGIE----GYYILLEALGGCL 260
+ +LHW A + D+I+AF+L E F +VPLP + E + I + ALGGCL
Sbjct: 231 NSSSLHWVATRKVQLFQPDLILAFNLTLETFNEVPLPDEIEEEVNSKSFKIRVAALGGCL 290
Query: 261 CLLCKFDDDDDDRPWDLWVMKEYGVNDSWTKLATLL----NVGGGNVKPLVYSRSEDKVL 316
C++ + D D+WVMKEYG +SW KL T++ ++ +++ L YS KVL
Sbjct: 291 CMIVDYKDTK----IDVWVMKEYGCRESWCKLFTVVKSSFDLPLQSLRLLGYSSDRKKVL 346
Query: 317 LHAVRGDLCWYDLERHRVRSIVEIDDKVRRCDMRTVCVNTLVSP 360
L +L WYDLE +V + EI D +CV +LV P
Sbjct: 347 LRVDVENLFWYDLESKQVSYVQEI----LNLDDTMICVGSLVPP 386
|
Source: Medicago truncatula Species: Medicago truncatula Genus: Medicago Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|357447909|ref|XP_003594230.1| F-box protein [Medicago truncatula] gi|355483278|gb|AES64481.1| F-box protein [Medicago truncatula] | Back alignment and taxonomy information |
|---|
Score = 181 bits (460), Expect = 4e-43, Method: Compositional matrix adjust.
Identities = 126/395 (31%), Positives = 193/395 (48%), Gaps = 54/395 (13%)
Query: 3 TSVQLPLDLIVDILIRLPVRSLARFRCVSRSFRSLIDGQDFVNRYVNHSIETNSNLGLFV 62
S +LP D + +I RLPV+SL RFR S+S +S+ID +F+N + +S+ + L L
Sbjct: 2 ASDRLPPDTLAEIFSRLPVKSLLRFRSTSKSLKSIIDSHNFINLHRKNSLNRSFILRL-- 59
Query: 63 SVENSKWKRRYYSLSFDQYAFDNCLEIDLPLMKNCKFGFIIGSCNGLLALEDSR------ 116
+ Y + D + ++ P +N +IGSCNGLLA+ +
Sbjct: 60 -------RSNIYQIEDDFSNLTTAVPLNHPFTRNSTNIALIGSCNGLLAVSNGEIALRHP 112
Query: 117 --RNIMLLLNPLTKRHRVLPTFYRDLSRCVPS-------LEGFGFDVGSGDFKLVK---I 164
N + + NP ++H ++P ++ PS + GFGFD +GD+K+++ +
Sbjct: 113 NAANEITIWNPNIRKHHIIPFLPLPITPRSPSDMNCSLCVHGFGFDPLTGDYKILRLSWL 172
Query: 165 LAFGKPMNYTEVAVFSLRVNSWRRIQDFPYFWV-TGTCSVFVNGALHWTAALNQDADRND 223
++ P V +FSL+ NSW+ I PY V T V V ++HW A D
Sbjct: 173 VSLQNPFYDPHVRLFSLKTNSWKIIPTMPYALVFAQTMGVLVEDSIHWIMAKKLDGLHPS 232
Query: 224 IIIAFDLKSEEFYQVPLPPIVGIE------GYYILLEALGGCLCLLCKFDDDDDDRPWDL 277
+I+AF+L E F +VPLP +G E I + ALGGCLC+ ++ D+
Sbjct: 233 LIVAFNLTLEIFNEVPLPDEIGEEEVNSNDSVEIDVAALGGCLCMTVNYETTK----IDV 288
Query: 278 WVMKEYGVNDSWTKLATLL----NVGGGNVKPLVYSRSEDKVLLHAV-------RGDLCW 326
WVMK+YG+ DSW KL T++ + PL YS KVL+ + L W
Sbjct: 289 WVMKQYGLKDSWCKLFTMMKSCVTSHLKSSSPLCYSSDGSKVLIEGIEVLLEVHHKKLFW 348
Query: 327 YDLERHRVRSIVEIDDKVRRCDMRTVCVNTLVSPN 361
YDL+ +V S EI D + +CV +LV P+
Sbjct: 349 YDLKTEQV-SYEEIPD----FNGAKICVGSLVPPS 378
|
Source: Medicago truncatula Species: Medicago truncatula Genus: Medicago Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|357448235|ref|XP_003594393.1| F-box protein [Medicago truncatula] gi|355483441|gb|AES64644.1| F-box protein [Medicago truncatula] | Back alignment and taxonomy information |
|---|
Score = 179 bits (455), Expect = 1e-42, Method: Compositional matrix adjust.
Identities = 134/416 (32%), Positives = 197/416 (47%), Gaps = 76/416 (18%)
Query: 4 SVQLPLDLIVDILIRLPVRSLARFRCVSRSFRSLIDGQDFVNRYVNHSIETNSNLGLFVS 63
+ +LP D++ +I RLPV+SL RFR S+S +SLID F+N ++ +S+ N NL L
Sbjct: 2 AAELPPDILAEIFSRLPVKSLLRFRSTSKSLKSLIDSLKFINLHLKNSL--NFNLIL--- 56
Query: 64 VENSKWKRRYYSLSFDQYAFDNCLEIDLP------------------LMKNCKFGFIIGS 105
R+ + F Q F N + +P L++N K +IGS
Sbjct: 57 --------RHNTTDFYQLHFPNLTKSIIPLNYPFTTNIDPSTRSPTDLLRNSKMS-LIGS 107
Query: 106 CNGLLAL--------EDSRRNIMLLLNPLTKRHRVLPTF--------YRDLSRCVPSLEG 149
CNGLLA+ + N + + NP T++H ++P Y D +C + G
Sbjct: 108 CNGLLAISTGVIVFTHPNNLNEITIWNPNTRKHHIIPFLPLPIPILNYDD--KCSLCVHG 165
Query: 150 FGFDVGSGDFKLVKI---LAFGKPMNYTEVAVFSLRVNSWRRIQDFPY-FWVTGTCSVFV 205
FGFD SGD+KL++I L P +V +FSL+ NSW+ I PY VFV
Sbjct: 166 FGFDQISGDYKLLRISHLLDLQNPFYDPQVRLFSLKTNSWKIIPAMPYDLQHLYDLGVFV 225
Query: 206 NGALHWTAALNQDADRNDIIIAFDLKSEEFYQVPLPPIVGI----EGYYILLEALGGCLC 261
++HW D +I+AF+L E F +VPLP +G E + + + LGGCLC
Sbjct: 226 ENSIHWIMTKKLDGLHPSLIVAFNLTLEIFNEVPLPDEIGEEVNGESFEVHVAVLGGCLC 285
Query: 262 LLCKFDDDDDDRPWDLWVMKEYGVNDSWTKLATL----LNVGGGNVKPLVYSRSEDKVLL 317
+ + D D+WVMKEYG DSW KL T+ ++ ++P+ YS KVLL
Sbjct: 286 ITVDYKDTK----IDVWVMKEYGCRDSWCKLFTMAESCFDLPLKLLRPICYSSDGSKVLL 341
Query: 318 HAV-------RGDLCWYDLERHRVRSIVEIDDKVRRCDMRTVCVNTLVSPNAHAGN 366
L WYDL+ ++ + I + CV +LV P+ N
Sbjct: 342 ERAHVLLEVQHRKLFWYDLKSEQISYVEGIPPNMNET---MFCVGSLVPPSFPVDN 394
|
Source: Medicago truncatula Species: Medicago truncatula Genus: Medicago Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|357448241|ref|XP_003594396.1| F-box protein [Medicago truncatula] gi|355483444|gb|AES64647.1| F-box protein [Medicago truncatula] | Back alignment and taxonomy information |
|---|
Score = 178 bits (451), Expect = 4e-42, Method: Compositional matrix adjust.
Identities = 137/400 (34%), Positives = 199/400 (49%), Gaps = 55/400 (13%)
Query: 4 SVQLPLDLIVDILIRLPVRSLARFRCVSRSFRSLIDGQDFVNRYVNHSIETNSNLGLFVS 63
+ +LP D++ ++ RLPV+SL RFR S+SF+SLID F+N ++ +S+ N +L L
Sbjct: 2 AAELPPDILAEVFSRLPVKSLLRFRSTSKSFKSLIDSHKFINLHLQNSL--NRSLILQRK 59
Query: 64 VENSKWKRRYYSLSFDQ--------YAFDNCLEIDLPLMKNCKFGFIIGSCNGLLALEDS 115
+ + + F + + N ID P N IGSCNGLLA+ +
Sbjct: 60 FDLYQLQIDDDDDDFSKSRIPLNHPFTAGNTSNID-PFEVNNTMTR-IGSCNGLLAICNG 117
Query: 116 R--------RNIMLLLNPLTKRHRVLPTFYRDLSRCVPSL------EGFGFDVGSGDFKL 161
+ N + NP T++HRV+P + P++ GFGFD SGD KL
Sbjct: 118 KFAFINPCDPNEITFWNPNTRKHRVIPFLPLPIPILDPTIRASLCVHGFGFDSLSGDHKL 177
Query: 162 VKI---LAFGKPMNYTEVAVFSLRVNSWRRIQDFPY-FWVTGTCSVFVN--GALHWTAAL 215
++I + V +FS + NSW+ I PY T VFV+ ++HW A
Sbjct: 178 LRISYLIDHQSTFYDPHVRLFSSKANSWKIIPTMPYVLQYYHTMGVFVDNSSSIHWVATR 237
Query: 216 NQDADRNDIIIAFDLKSEEFYQVPLPPIVGIE----GYYILLEALGGCLCLLCKFDDDDD 271
+ ++D+I+AF+L E F +VPLP +G E + I + LGGCLC+ + +
Sbjct: 238 KNQSFQSDLILAFNLSLETFNEVPLPDELGEEVNSNSFEIRVAVLGGCLCMTVDYKTTN- 296
Query: 272 DRPWDLWVMKEYGVNDSWTKLATLLNVGGG----NVKPLVYSR-------SEDKVLLHAV 320
D+WVMKEYG DSW KL TL+ G +++PL YSR D VLL
Sbjct: 297 ---VDIWVMKEYGSRDSWCKLFTLVKSSLGLPLESLRPLCYSRDGRKVLLEGDHVLLEVQ 353
Query: 321 RGDLCWYDLERHRVRSIVEIDDKVRRCDMRTVCVNTLVSP 360
L WYDL+ +V S VE + + D VCV +LV P
Sbjct: 354 HWKLFWYDLKSEQV-SYVEGNSNL---DDAMVCVGSLVPP 389
|
Source: Medicago truncatula Species: Medicago truncatula Genus: Medicago Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|356562593|ref|XP_003549554.1| PREDICTED: F-box protein CPR30-like [Glycine max] | Back alignment and taxonomy information |
|---|
Score = 177 bits (450), Expect = 6e-42, Method: Compositional matrix adjust.
Identities = 125/372 (33%), Positives = 194/372 (52%), Gaps = 34/372 (9%)
Query: 5 VQLPLDLIVDILIRLPVRSLARFRCVSRSFRSLIDGQDFVNRYVNHSIETNSNLGLFVSV 64
LP++++ +IL RLPV+S+ R R + +RS+ID + F+ ++N +++++L L
Sbjct: 2 ANLPVEVVTEILSRLPVKSVIRLRSTCKWWRSIIDSRHFILFHLN---KSHTSLIL---- 54
Query: 65 ENSKWKRRYYSLSFDQYAFDNCLEIDLPLMKNCKFGFIIGSCNGLLALEDSRRNIMLLLN 124
+ + + YSL N E+ PLM ++GS NGLL + + +I L N
Sbjct: 55 ---RHRSQLYSLDLKSLLDPNPFELSHPLMCYSNSIKVLGSSNGLLCISNVADDIALW-N 110
Query: 125 PLTKRHRVLPT--FYRDLSRCVPS-LEGFGFDVGSGDFKLVKILAF---GKPMNYTEVAV 178
P ++HR+LP+ F+R S + + GFG S D+KL+ I F K ++V +
Sbjct: 111 PFLRKHRILPSDRFHRPESSLFAARVYGFGHHPPSNDYKLLSITYFVDLHKRTFDSQVQL 170
Query: 179 FSLRVNSWRRIQDFPYFWVTG-TCSVFVNGALHWTAALNQDADRNDIIIAFDLKSEEFYQ 237
++L+ +SW+ + PY T VFV+G+LHW D D+I+AFDL SE F +
Sbjct: 171 YTLKSDSWKNLPSMPYALCCARTMGVFVSGSLHWLVTRKLQPDEPDLIVAFDLTSETFCE 230
Query: 238 VPLPPIVGIEGYYILLEALGGCLCLLCKFDDDDDDRPWDLWVMKEYGVNDSWTKLATLL- 296
VPLP V + + + LGGCLC++ + + +WVM+ YG DSW KL +L
Sbjct: 231 VPLPATVN-GNFDMQVALLGGCLCVV-----EHRGTGFHVWVMRVYGSRDSWEKLFSLTE 284
Query: 297 ----NVGGGN---VKPLVYSRSEDKVLLHAVRGDLCWYDLERHRVRSIVEIDDKVRRCDM 349
+G G V+PL D+VL R LCWYDL+ V S V++ +
Sbjct: 285 NHHHEMGSGKLKYVRPLALDDG-DRVLFEHNRSKLCWYDLKTGDV-SCVKLPSGIGNTIE 342
Query: 350 RTVCVNTLVSPN 361
TVCV +LV P
Sbjct: 343 GTVCVQSLVPPT 354
|
Source: Glycine max Species: Glycine max Genus: Glycine Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST
Original result of BLAST against Gene Ontology (AMIGO)
| ID |
Alignment graph |
Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 366 | ||||||
| TAIR|locus:2135615 | 413 | CPR1 "AT4G12560" [Arabidopsis | 0.620 | 0.549 | 0.293 | 2.8e-28 | |
| TAIR|locus:2076196 | 364 | AT3G23880 "AT3G23880" [Arabido | 0.928 | 0.934 | 0.271 | 1.2e-24 | |
| TAIR|locus:2127465 | 402 | AT4G22390 "AT4G22390" [Arabido | 0.874 | 0.796 | 0.279 | 1.3e-22 | |
| TAIR|locus:2082410 | 427 | AT3G06240 "AT3G06240" [Arabido | 0.368 | 0.316 | 0.356 | 1.4e-21 | |
| TAIR|locus:2077452 | 417 | AT3G07870 "AT3G07870" [Arabido | 0.426 | 0.374 | 0.317 | 1.8e-15 | |
| TAIR|locus:2141548 | 383 | AT4G09190 "AT4G09190" [Arabido | 0.603 | 0.577 | 0.3 | 8.2e-14 | |
| TAIR|locus:2015756 | 400 | AT1G30920 "AT1G30920" [Arabido | 0.617 | 0.565 | 0.273 | 1.6e-13 | |
| TAIR|locus:2041016 | 420 | AT2G43260 [Arabidopsis thalian | 0.609 | 0.530 | 0.276 | 3.2e-13 | |
| TAIR|locus:2152064 | 392 | AT5G65850 "AT5G65850" [Arabido | 0.590 | 0.551 | 0.281 | 1.4e-12 | |
| TAIR|locus:2100524 | 390 | AT3G52320 "AT3G52320" [Arabido | 0.606 | 0.569 | 0.297 | 5.1e-12 |
| TAIR|locus:2135615 CPR1 "AT4G12560" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 235 (87.8 bits), Expect = 2.8e-28, Sum P(2) = 2.8e-28
Identities = 77/262 (29%), Positives = 128/262 (48%)
Query: 7 LPLDLIVDILIRLPVRSLARFRCVSRSFRSLIDGQDFVNRYVNHSIETNSNLGLFVSVEN 66
+P+D++ DI +RLP ++L R R +S+ LI+ DF+ +++ ++T +L + +
Sbjct: 4 IPMDIVNDIFLRLPAKTLVRCRALSKPCYHLINDPDFIESHLHRVLQTGDHLMILL---- 59
Query: 67 SKWKRRYYSLSFDQYAFDNCLEIDLPLMKNCKFGFIIGSCNGLLALEDSRRNIMLLLNPL 126
+ R YS+ D + D+ +++ P MK + GS NGL+ L +S ++ + NP
Sbjct: 60 -RGALRLYSVDLD--SLDSVSDVEHP-MKRGGPTEVFGSSNGLIGLSNSPTDLAVF-NPS 114
Query: 127 TKR-HRVLPTFYRDLSRCVPS----LEGFGFDVGSGDFKLVKILAF--------GKPMNY 173
T++ HR+ P+ DL + G G+D S D+K+V+++ F G Y
Sbjct: 115 TRQIHRLPPSSI-DLPDGSSTRGYVFYGLGYDSVSDDYKVVRMVQFKIDSEDELGCSFPY 173
Query: 174 TEVAVFSLRVNSWRRIQDFP-------YFWV----TGTCSVFVNGALHWTAALNQDADRN 222
EV VFSL+ NSW+RI+ YF+ V +LHW
Sbjct: 174 -EVKVFSLKKNSWKRIESVASSIQLLFYFYYHLLYRRGYGVLAGNSLHWVLPRRPGLIAF 232
Query: 223 DIIIAFDLKSEEFYQVPLPPIV 244
++I+ FDL EEF V P V
Sbjct: 233 NLIVRFDLALEEFEIVRFPEAV 254
|
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| TAIR|locus:2076196 AT3G23880 "AT3G23880" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 281 (104.0 bits), Expect = 1.2e-24, P = 1.2e-24
Identities = 99/364 (27%), Positives = 163/364 (44%)
Query: 7 LPLDLIVDILIRLPVRSLARFRCVSRSFRSLIDGQDFVNRY---VNHSIETNSNLGLFVS 63
LPL+++ +IL+RLPV+SL RF+CV S+RSLI F ++ + S T S +
Sbjct: 14 LPLEMMEEILLRLPVKSLTRFKCVCSSWRSLISETLFALKHALILETSKATTSTKSPYGV 73
Query: 64 VENSKWKRRYYSL-SFDQYAFDNCLEIDLPLMKNCKFGFIIGSCNGLLALEDSRRNIMLL 122
+ S++ + + S + E D L+ + ++G+C+GL+ + L
Sbjct: 74 ITTSRYHLKSCCIHSLYNASTVYVSEHDGELLGRDYYQ-VVGTCHGLVCFHVDYDKSLYL 132
Query: 123 LNPLTKRHRVLPTFYRDLS--RCVPSLEGFGFDVGSGDFKLVKILAFGKPMNYTEVAVFS 180
NP K + L + + S CV + GFG+D D+K+V +L + E ++S
Sbjct: 133 WNPTIKLQQRLSSSDLETSDDECVVTY-GFGYDESEDDYKVVALLQQRHQVKI-ETKIYS 190
Query: 181 LRVNSWRRIQDFPYFWVTGTCS---VFVNGALHWTAALNQDADRNDIIIAFDLKSEEFYQ 237
R WR FP V S +++NG L+W A + + II++D+ +EF +
Sbjct: 191 TRQKLWRSNTSFPSGVVVADKSRSGIYINGTLNWAAT---SSSSSWTIISYDMSRDEFKE 247
Query: 238 VPLPPIVGIEGYYIXXXXXXXXXXXXXXXXXXXXXXXXXXWVMKEYGVNDSWTKLATLLN 297
+P P G G + WVMKE+G SW+KL ++
Sbjct: 248 LPGPVCCG-RGCF---TMTLGDLRGCLSMVCYCKGANADVWVMKEFGEVYSWSKLLSIPG 303
Query: 298 VGGGNVKPLVYSRSEDKVLLHAVRGDLCWYDLERHRVRSIVEIDDKVRRCDMRTVCVNTL 357
+ V+PL S + V+L R L Y+ R + + + C V + T+
Sbjct: 304 LTDF-VRPLWIS--DGLVVLLEFRSGLALYNCSNGRFH--YPVSNSISGCRDAKVYLKTM 358
Query: 358 VSPN 361
VSPN
Sbjct: 359 VSPN 362
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| TAIR|locus:2127465 AT4G22390 "AT4G22390" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 263 (97.6 bits), Expect = 1.3e-22, P = 1.3e-22
Identities = 102/365 (27%), Positives = 163/365 (44%)
Query: 6 QLPLDLIVDILIRLPVRSLARFRCVSRSFRSLIDGQDFVNRYVNHSIETNSNLGLFVSVE 65
+ P DLI ++ +RL +L + R +S+ SLID +FV+ ++ +ET +L + +
Sbjct: 3 ECPTDLINEMFLRLRATTLVKCRVLSKPCFSLIDSPEFVSSHLRRRLETGEHLMILL--- 59
Query: 66 NSKWKRRYYSLSFDQYAFDNCLEIDLPLMKNCKFGFIIGSCNGLLALEDSRRNIMLLLNP 125
+ R ++ D +N +I PL F + GS NG++ L +S ++ + NP
Sbjct: 60 --RGPRLLRTVELDSP--ENVSDIPHPLQAG-GFTEVFGSFNGVIGLCNSPVDLAIF-NP 113
Query: 126 LTKR-HR--VLPTFY--RDLSRCVPSLEGFGFDVGSGDFKLVKI----LAFGK---PMNY 173
T++ HR + P + RD++R G G+D DFK+V+I L GK P
Sbjct: 114 STRKIHRLPIEPIDFPERDITREYV-FYGLGYDSVGDDFKVVRIVQCKLKEGKKKFPCP- 171
Query: 174 TEVAVFSLRVNSWRRIQ---DFPYFWVT--------GTCSVFVNGALHWTAALNQDADRN 222
EV VFSL+ NSW+R+ +F W++ V VN LHW Q
Sbjct: 172 VEVKVFSLKKNSWKRVCLMFEFQILWISYYYHLLPRRGYGVVVNNHLHWILPRRQGVIAF 231
Query: 223 DIIIAFDLKSEEFYQVPLPPIVGIEGYYIXXXXXXXXXXXXXXXXXXXXXXXXXXWVMKE 282
+ II +DL S++ + P + YI WV+KE
Sbjct: 232 NAIIKYDLASDDIGVLSFP-----QELYIEDNMDIGVLDGCVCLMCYDEYSHVDVWVLKE 286
Query: 283 YGVNDSWTKLATLLNVGGGN----VKPLVYSRSEDKVLLHAVRG-DLCWYDLERHRVRSI 337
Y SWTKL + ++PL+ S+ K+LL +L W+DLE + +
Sbjct: 287 YEDYKSWTKLYRVPKPESVESVEFIRPLICSKDRSKILLEINNAANLMWFDLESQSLTTA 346
Query: 338 -VEID 341
+E D
Sbjct: 347 GIECD 351
|
|
| TAIR|locus:2082410 AT3G06240 "AT3G06240" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 207 (77.9 bits), Expect = 1.4e-21, Sum P(2) = 1.4e-21
Identities = 52/146 (35%), Positives = 82/146 (56%)
Query: 102 IIGSCNGLLALEDSRRNIMLLLNPLTKRHRVLPTFYRDLS----RCVPSLEGFGFDVGSG 157
I+GS NGL+ + + L NP T + LP +R S R GFGFD +
Sbjct: 165 IVGSSNGLVCISPGE-GAVFLYNPTTGDSKRLPENFRPKSVEYERDNFQTYGFGFDGLTD 223
Query: 158 DFKLVKILAFGKPMNYTEVAVFSLRVNSWRRIQDFPYFWVTG--TCSVFVNGALHWTAAL 215
D+KLVK++A + + + +V+SL+ +SWRRI + Y G T V NGA+HW
Sbjct: 224 DYKLVKLVATSEDI--LDASVYSLKADSWRRICNLNYEHNDGSYTSGVHFNGAIHWVFTE 281
Query: 216 NQDADRNDIIIAFDLKSEEFYQVPLP 241
++ R +++AFD+++EEF ++P+P
Sbjct: 282 SRHNQR--VVVAFDIQTEEFREMPVP 305
|
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| TAIR|locus:2077452 AT3G07870 "AT3G07870" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 138 (53.6 bits), Expect = 1.8e-15, Sum P(3) = 1.8e-15
Identities = 55/173 (31%), Positives = 78/173 (45%)
Query: 7 LPLDLIVDILIRLPVRSLARFRCVSRSFRSLIDGQDFVNRYVNHSIETNSNLGLFVS--V 64
LP D+I DI RLP+ S+AR V RS+RS++ ++ + S T L L +
Sbjct: 28 LPEDIIADIFSRLPISSIARLMFVCRSWRSVLTQHGRLSS--SSSSPTKPCLLLHCDSPI 85
Query: 65 ENSKWKRRYYSLSFDQYAFDNCLEIDLPLMKNCKFGFIIGSCNGLLALEDSRRNIMLLL- 123
N + LS ++ + L + ++GSCNGLL L DS N L L
Sbjct: 86 RNGL---HFLDLSEEEKRIKT-KKFTLRFASSMPEFDVVGSCNGLLCLSDSLYNDSLYLY 141
Query: 124 NPLTKRHRVLPTF---YRDLSRCVPSLEGFGFDVGSGDFKLVKILAF-GKPMN 172
NP T LP Y D GFGF + ++K++KI+ F G N
Sbjct: 142 NPFTTNSLELPECSNKYHDQELVF----GFGFHEMTKEYKVLKIVYFRGSSSN 190
|
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| TAIR|locus:2141548 AT4G09190 "AT4G09190" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 201 (75.8 bits), Expect = 8.2e-14, P = 8.2e-14
Identities = 72/240 (30%), Positives = 120/240 (50%)
Query: 7 LPLDLIVDILIRLPVRSLARFRCVSRSFRSLIDGQDFVNRYVNHSIETNSNLGLFVSVEN 66
+PLDLIV+I+ LP +S+ RFR VS+ + S+I DF + V S+ + + L + ++
Sbjct: 22 IPLDLIVEIVSSLPAKSIVRFRSVSKLWSSIITTPDFTSSVVTRSLSSRPCV-LLIFQKH 80
Query: 67 SKWKRRYYSLSFDQYAFDNCLEIDLPLMKNCKFGFIIGSCNGLLALEDSRRNIMLLLNPL 126
K + S + N + N K S +GL+ LE S N+M + NP+
Sbjct: 81 DKLFF-FASPVHQKKTCPNVENFQYTIPNNGKLQRC-ESVHGLIYLETST-NVMFIRNPI 137
Query: 127 TKRHRVLPTFYRDLSRCVPSLEGF-GFDVGSGDFKLVKILAFGKPMNYTEVAVFSLRVN- 184
TK LP D P L GF G+D +G +K++ IL K N ++ + +L
Sbjct: 138 TKSFFTLPKL--DSKEGRP-LTGFLGYDPINGKYKVLCIL---KERN--KIGILTLGAQE 189
Query: 185 SWRRIQD--FPYFWVTGTCSVFVNGALHWTAALNQDADRNDI-IIAFDLKSEEFYQVPLP 241
SWR + ++ VTG ++G +++ + D R ++ I++FDL+SE+F + P
Sbjct: 190 SWRILSKGFLSHYKVTGYAKC-IDGVIYYEGSFG-DGLRQELAIMSFDLRSEKFSLIKHP 247
|
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| TAIR|locus:2015756 AT1G30920 "AT1G30920" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 199 (75.1 bits), Expect = 1.6e-13, P = 1.6e-13
Identities = 68/249 (27%), Positives = 118/249 (47%)
Query: 2 ETSVQLPLDLIVDILIRLPVRSLARFRCVSRSFRSLIDGQDFVNRYVNHSIETNSNLGLF 61
E + +P+DLI+DIL RLP +S+AR RCVS+ + S+I F ++ S +S L
Sbjct: 5 ENTDSIPIDLILDILSRLPSKSIARCRCVSKLWESMIRQSYFTELFLTRS---SSRPHLL 61
Query: 62 VSVENS-KWKRRYYSLSFDQ-YAFDNCLEIDLPL-MK---------NCKFGFIIGSCNGL 109
++VE +WK ++SL + Y + L + L +K C + + +
Sbjct: 62 IAVEQEGEWK--FFSLPQPKNYLGKSSLVVAANLHLKFFEDKRPQHGCSYASSLIYFPNM 119
Query: 110 LALEDSRRNIMLLLNPLTKRHR--VLPTFYRDLSRCVPSLEGFGFDVGSGDFK-LVKILA 166
+ ++ ++ NP T ++ +LP D + VP + GFD FK L+ I
Sbjct: 120 TIRKKGDDHLGVICNPSTGQYGYVILPPLL-DF-KSVPYGKFLGFDPIDKQFKVLIPIFD 177
Query: 167 FGKPMNYTEVAVFSLRVNSWRRIQDFPYFWVTGTCSVFVNGALHWTAALNQDADRNDIII 226
F K + WR+IQ + ++ +NG L++ A +N D+N +++
Sbjct: 178 FDKHQTDHHILTLGAETVGWRKIQSPLRYLPHSNGTICINGILYYLAKINYAMDKN-VLV 236
Query: 227 AFDLKSEEF 235
FD++SE F
Sbjct: 237 CFDVRSENF 245
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| TAIR|locus:2041016 AT2G43260 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 197 (74.4 bits), Expect = 3.2e-13, P = 3.2e-13
Identities = 70/253 (27%), Positives = 124/253 (49%)
Query: 4 SVQLPLDLIVDILIRLPVRSLARFRCVSRSFRSLIDGQDFVNRYVNHSIETNSNLGLFVS 63
S+ + +L+ ++L+RLP +S+ + R VS+ +RSL++ F R++ S++ NS + +
Sbjct: 10 SIDILPELLEEVLLRLPTKSILKCRIVSKQWRSLLESSRFAERHM--SLQ-NSRRRILAA 66
Query: 64 VENSKWKRRYYSLSFDQYAFDNCLEIDLPLMKNCKFGFIIGSCNGLLALEDSRRNIMLLL 123
RR + F+ EI + +C +C G++ + ++ +++L
Sbjct: 67 YNCDCGGRRKL---LPESRFEGDEEI---VYLHCDASRPSMTCQGVICFPE--QDWIIVL 118
Query: 124 NPLTKRHRVLPT-------FYRDLSRCV-PS--LEGFGFDVGSGDFKLVKI-LAFGKPMN 172
NP T + R P+ F L + P + GFG D +G +K+V++ AF +
Sbjct: 119 NPSTSQLRRFPSGLNHNCRFRIGLWKTFSPGNWVMGFGRDKVNGRYKVVRMSFAFWRVRQ 178
Query: 173 ---YTEVAVFSLRVNSWRRIQDFPYFWVTGTCSVFVNGALHWTAALNQDADRNDIIIAFD 229
E V + WR++ PY G+ SV VNG+++W Q R I+A D
Sbjct: 179 EEPVVECGVLDVDTGEWRKLSPPPYVVNVGSKSVCVNGSIYWLHI--QTVYR---ILALD 233
Query: 230 LKSEEFYQVPLPP 242
L EEF++VP+PP
Sbjct: 234 LHKEEFHKVPVPP 246
|
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| TAIR|locus:2152064 AT5G65850 "AT5G65850" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 191 (72.3 bits), Expect = 1.4e-12, P = 1.4e-12
Identities = 67/238 (28%), Positives = 115/238 (48%)
Query: 2 ETSVQLPLDLIVDILIRLPVRSLARFRCVSRSFRSLIDGQDFVNRYVNHSIETNSNLGLF 61
E SVQ+P+D+I++IL+RLP +S+A RCVS+ + S+I QDF ++ S+ L LF
Sbjct: 30 EKSVQIPVDIIIEILLRLPAKSIATCRCVSKLWISVICRQDFTELFLTRSLH-RPQL-LF 87
Query: 62 VSVENSKWKRRYYSLSFDQYAFDNCLEIDLPLMKNCKFGFIIGS-CNGLLALEDSRRN-- 118
++ ++S Q ++N I L KN + I NGL+ + N
Sbjct: 88 CCKKDGNLF--FFSSPQLQNPYENSSAISL---KNFSLCYKISRPVNGLICFKRKEMNET 142
Query: 119 IMLLLNPLTKRHRVLPTFYRDLSRCVPSLEGFGFDVGSGDFKLVKILAFGKPMNYTEVAV 178
+ ++ NP T LP + + + F ++ FK+ +L++ + +V
Sbjct: 143 VTVICNPSTGHTLSLP---KPMKTSIGPSRFFVYEPIQKQFKV--LLSYKSDEH--QVLT 195
Query: 179 FSLRVNSWRRIQ-DFPYFWVTGTCSVFVNGALHWTAALNQDADRNDIIIAFDLKSEEF 235
SWR I+ P+ + G + +NG L++ A D II+ FD++SE+F
Sbjct: 196 LGTGELSWRIIECSMPH--ILGMSEICINGVLYYPAINLSSGDY--IIVCFDVRSEKF 249
|
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| TAIR|locus:2100524 AT3G52320 "AT3G52320" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 186 (70.5 bits), Expect = 5.1e-12, P = 5.1e-12
Identities = 74/249 (29%), Positives = 122/249 (48%)
Query: 6 QLPLDLIVDILIRLPVRSLARFRCVSRSFRSLIDGQDFVNRYVNHSIETNSNLGLFVSVE 65
++P ++++DILIRLP +SL RF+CVS+ + SLI + F NR+ S + V E
Sbjct: 26 EIPEEMLIDILIRLPAKSLMRFKCVSKLWLSLITSRYFTNRFFKPS-SPSCLFAYLVDRE 84
Query: 66 N-SKWKRRYYSLSFDQYAFDNCLE-ID----LPLMKNCKFGFIIGSCNGLLALEDSRRNI 119
N SK+ S S D + ID +P+M G+++ + GLL RR
Sbjct: 85 NQSKYLLLQSSSSSRHDHSDTSVSVIDQHSTIPIMG----GYLVNAARGLLCYRTGRR-- 138
Query: 120 MLLLNPLTKRHRVLPTFYRDLSRCVPSLEGFGFDVGSGDFKLVKIL-AFGKPMNY--TEV 176
+ + NP T++ LP R + FG D ++K++ + K +E
Sbjct: 139 VKVCNPSTRQIVELPIM-RSKTNV---WNWFGHDPFHDEYKVLSLFWEVTKEQTVVRSEH 194
Query: 177 AVFSLRVN-SWRRIQDF--PYF-WVTGTCSVFVNGALHWTAALNQDADRNDIIIAFDLKS 232
V L V SWR + P+ + + + ++G L+++A DA+R ++++FDL S
Sbjct: 195 QVLVLGVGASWRNTKSHHTPHRPFHPYSRGMTIDGVLYYSA--RTDANRC-VLMSFDLSS 251
Query: 233 EEFYQVPLP 241
EEF + LP
Sbjct: 252 EEFNLIELP 260
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Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Annotation Transfer from SWISS-PROT Entries
Original result of BLAST against SWISS-PROT
No confident hit for EC number transfering in SWISSPROT detected by BLAST
EC Number Prediction by Ezypred Server
Original result from Ezypred Server
Fail to connect to Ezypred Server
EC Number Prediction by EFICAz Software
No EC number assignment, probably not an enzyme!
Prediction of Functionally Associated Proteins
Functionally Associated Proteins Detected by STRING
Original result from the STRING server
| Your Input: |  |
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 | eugene3.00010191 | hypothetical protein (408 aa) | |||||||||
(Populus trichocarpa) | |||||||||||
Predicted Functional Partners: | |||||||||||
| Sorry, there are no predicted associations at the current settings. | |||||||||||
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST
Original result of RPS-BLAST against CDD database part I
| ID | Alignment Graph | Length |
Definition |
E-value |
| Query | 366 | |||
| TIGR01640 | 230 | TIGR01640, F_box_assoc_1, F-box protein interactio | 7e-27 | |
| smart00256 | 41 | smart00256, FBOX, A Receptor for Ubiquitination Ta | 1e-07 | |
| pfam00646 | 48 | pfam00646, F-box, F-box domain | 6e-07 | |
| pfam08268 | 125 | pfam08268, FBA_3, F-box associated domain | 4e-05 | |
| pfam07734 | 159 | pfam07734, FBA_1, F-box associated | 5e-05 | |
| pfam12937 | 47 | pfam12937, F-box-like, F-box-like | 1e-04 |
| >gnl|CDD|233502 TIGR01640, F_box_assoc_1, F-box protein interaction domain | Back alignment and domain information |
|---|
Score = 106 bits (266), Expect = 7e-27
Identities = 54/197 (27%), Positives = 92/197 (46%), Gaps = 12/197 (6%)
Query: 103 IGSCNGLLALEDSRRNIMLLLNPLTKRHRVLPTFYRDLSRCVP--SLEGFGFDVGSGDFK 160
+ C+GL+ +R +++ NP T + R LPT R G+D +K
Sbjct: 1 VVPCDGLICFSYGKR--LVVWNPSTGQSRWLPT--PKSRRSNKESDTYFLGYDPIEKQYK 56
Query: 161 LVKILAFGKPMNYTEVAVFSLRVNSWRRIQDFPYFWVTGTCSVFVNGALHWTAALNQDAD 220
++ N +E V++L NSWR I+ P + V +NG L++ A +
Sbjct: 57 VLCFSDRSGNRNQSEHQVYTLGSNSWRTIECSPPHHPLKSRGVCINGVLYYL-AYTLKTN 115
Query: 221 RNDIIIAFDLKSEEFYQ-VPLPPIVGIEGYYILLEALGGCLCLLCKFDDDDDDRPWDLWV 279
+ I++FD+ SE F + +PLP Y+ L G L +L + D ++ +DLWV
Sbjct: 116 PDYFIVSFDVSSERFKEFIPLPCGNSDSVDYLSLINYKGKLAVLKQKKDTNN---FDLWV 172
Query: 280 MKEYGVNDSWTKLATLL 296
+ + G + W+KL T+
Sbjct: 173 LNDAGKQE-WSKLFTVP 188
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This model describes a large family of plant domains, with several hundred members in Arabidopsis thaliana. Most examples are found C-terminal to an F-box (pfam00646), a 60 amino acid motif involved in ubiquitination of target proteins to mark them for degradation. Two-hybid experiments support the idea that most members are interchangeable F-box subunits of SCF E3 complexes. Some members have two copies of this domain. Length = 230 |
| >gnl|CDD|197608 smart00256, FBOX, A Receptor for Ubiquitination Targets | Back alignment and domain information |
|---|
Score = 47.0 bits (113), Expect = 1e-07
Identities = 18/41 (43%), Positives = 26/41 (63%)
Query: 7 LPLDLIVDILIRLPVRSLARFRCVSRSFRSLIDGQDFVNRY 47
LP +++ +IL +L + L R R VSR +RSLID DF +
Sbjct: 1 LPDEILEEILSKLDPKDLLRLRKVSRKWRSLIDSHDFWFKL 41
|
Length = 41 |
| >gnl|CDD|201368 pfam00646, F-box, F-box domain | Back alignment and domain information |
|---|
Score = 45.3 bits (108), Expect = 6e-07
Identities = 16/44 (36%), Positives = 25/44 (56%)
Query: 6 QLPLDLIVDILIRLPVRSLARFRCVSRSFRSLIDGQDFVNRYVN 49
LP DL+++IL RL + L R VS+ +RSL+D + +
Sbjct: 5 DLPDDLLLEILSRLDPKDLLRLSLVSKRWRSLVDSLKLWKKRLL 48
|
This domain is approximately 50 amino acids long, and is usually found in the N-terminal half of a variety of proteins. Two motifs that are commonly found associated with the F-box domain are the leucine rich repeats (LRRs; pfam00560 and pfam07723) and the WD repeat (pfam00400). The F-box domain has a role in mediating protein-protein interactions in a variety of contexts, such as polyubiquitination, transcription elongation, centromere binding and translational repression. Length = 48 |
| >gnl|CDD|219769 pfam08268, FBA_3, F-box associated domain | Back alignment and domain information |
|---|
Score = 42.3 bits (100), Expect = 4e-05
Identities = 23/90 (25%), Positives = 41/90 (45%), Gaps = 8/90 (8%)
Query: 202 SVFVNGALHWTAALNQDADRNDIIIAFDLKSEEFYQVPLPPIVGIEGYYILLEALGGCLC 261
+ +NG L++ A + N +I++FD++SE+F + LP + L+ G L
Sbjct: 1 GICINGVLYYGAWT--SDNSNSVIVSFDVRSEKFSFIKLPVPLANLLSSTLIN-YKGKLA 57
Query: 262 LLCKFDDDDDDRPWDLWVMKEYGVNDSWTK 291
L+ +LWV+ E W+K
Sbjct: 58 LVSH----TSLGGIELWVL-EDAEKHEWSK 82
|
Length = 125 |
| >gnl|CDD|219544 pfam07734, FBA_1, F-box associated | Back alignment and domain information |
|---|
Score = 43.0 bits (102), Expect = 5e-05
Identities = 23/93 (24%), Positives = 39/93 (41%), Gaps = 6/93 (6%)
Query: 202 SVFVNGALHWTAALNQDADRNDIIIAFDLKSEEFYQ-VPLPPIVGIEGYYILLEALGGCL 260
V + G +W A ++ + D +++FD +E F +PLP L L
Sbjct: 1 GVSLKGNTYWL-ASEKETNEEDFLLSFDFTTERFGPRLPLPFQSPDLDTVSLSVVREEKL 59
Query: 261 CLLCKFDDDDDDRPWDLWVMKEYGVND-SWTKL 292
+L + DD ++WV + N SW+K
Sbjct: 60 AVLLQ---CDDTSKIEIWVTTKIEPNAVSWSKF 89
|
Most of these proteins contain pfam00646 at the N terminus, suggesting that they are effectors linked with ubiquitination. Length = 159 |
| >gnl|CDD|221867 pfam12937, F-box-like, F-box-like | Back alignment and domain information |
|---|
Score = 39.0 bits (92), Expect = 1e-04
Identities = 11/34 (32%), Positives = 16/34 (47%)
Query: 6 QLPLDLIVDILIRLPVRSLARFRCVSRSFRSLID 39
LP ++++ I L R L R V R +R L
Sbjct: 3 DLPDEILLQIFSYLDPRDLLRLALVCRRWRELAS 36
|
This is an F-box-like family. Length = 47 |
Conserved Domains Detected by HHsearch
Original result of HHsearch against CDD database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 366 | |||
| TIGR01640 | 230 | F_box_assoc_1 F-box protein interaction domain. Th | 100.0 | |
| PF07734 | 164 | FBA_1: F-box associated; InterPro: IPR006527 This | 99.7 | |
| PLN03215 | 373 | ascorbic acid mannose pathway regulator 1; Provisi | 99.69 | |
| PF08268 | 129 | FBA_3: F-box associated domain; InterPro: IPR01318 | 99.59 | |
| PHA02713 | 557 | hypothetical protein; Provisional | 99.56 | |
| KOG4441 | 571 | consensus Proteins containing BTB/POZ and Kelch do | 99.49 | |
| KOG4441 | 571 | consensus Proteins containing BTB/POZ and Kelch do | 99.45 | |
| PHA03098 | 534 | kelch-like protein; Provisional | 99.43 | |
| PHA02713 | 557 | hypothetical protein; Provisional | 99.42 | |
| PHA02790 | 480 | Kelch-like protein; Provisional | 99.33 | |
| PLN02153 | 341 | epithiospecifier protein | 99.31 | |
| TIGR03547 | 346 | muta_rot_YjhT mutatrotase, YjhT family. Members of | 99.26 | |
| PLN02193 | 470 | nitrile-specifier protein | 99.23 | |
| PRK14131 | 376 | N-acetylneuraminic acid mutarotase; Provisional | 99.18 | |
| TIGR03548 | 323 | mutarot_permut cyclically-permuted mutatrotase fam | 99.18 | |
| PHA02790 | 480 | Kelch-like protein; Provisional | 99.11 | |
| PHA03098 | 534 | kelch-like protein; Provisional | 99.1 | |
| PF12937 | 47 | F-box-like: F-box-like; PDB: 1P22_A 2OVP_B 2OVR_B | 99.0 | |
| PLN02153 | 341 | epithiospecifier protein | 98.98 | |
| PLN02193 | 470 | nitrile-specifier protein | 98.93 | |
| PF00646 | 48 | F-box: F-box domain; InterPro: IPR001810 The F-box | 98.88 | |
| TIGR03548 | 323 | mutarot_permut cyclically-permuted mutatrotase fam | 98.79 | |
| PRK14131 | 376 | N-acetylneuraminic acid mutarotase; Provisional | 98.76 | |
| smart00256 | 41 | FBOX A Receptor for Ubiquitination Targets. | 98.73 | |
| TIGR03547 | 346 | muta_rot_YjhT mutatrotase, YjhT family. Members of | 98.68 | |
| KOG1230 | 521 | consensus Protein containing repeated kelch motifs | 98.38 | |
| KOG4693 | 392 | consensus Uncharacterized conserved protein, conta | 98.28 | |
| KOG4693 | 392 | consensus Uncharacterized conserved protein, conta | 98.15 | |
| KOG0379 | 482 | consensus Kelch repeat-containing proteins [Genera | 97.99 | |
| KOG0281 | 499 | consensus Beta-TrCP (transducin repeats containing | 97.93 | |
| KOG0379 | 482 | consensus Kelch repeat-containing proteins [Genera | 97.91 | |
| KOG2120 | 419 | consensus SCF ubiquitin ligase, Skp2 component [Po | 97.67 | |
| KOG1230 | 521 | consensus Protein containing repeated kelch motifs | 97.45 | |
| PF13964 | 50 | Kelch_6: Kelch motif | 96.98 | |
| KOG2997 | 366 | consensus F-box protein FBX9 [General function pre | 96.85 | |
| PF02191 | 250 | OLF: Olfactomedin-like domain; InterPro: IPR003112 | 96.68 | |
| PF01344 | 47 | Kelch_1: Kelch motif; InterPro: IPR006652 Kelch is | 96.55 | |
| COG3055 | 381 | Uncharacterized protein conserved in bacteria [Fun | 96.31 | |
| KOG0274 | 537 | consensus Cdc4 and related F-box and WD-40 protein | 96.3 | |
| smart00284 | 255 | OLF Olfactomedin-like domains. | 96.28 | |
| PF13360 | 238 | PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A | 96.16 | |
| PF07646 | 49 | Kelch_2: Kelch motif; InterPro: IPR011498 Kelch is | 95.58 | |
| PF13360 | 238 | PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A | 95.43 | |
| PRK11138 | 394 | outer membrane biogenesis protein BamB; Provisiona | 95.05 | |
| PF07250 | 243 | Glyoxal_oxid_N: Glyoxal oxidase N-terminus; InterP | 94.89 | |
| TIGR03300 | 377 | assembly_YfgL outer membrane assembly lipoprotein | 94.78 | |
| PRK11138 | 394 | outer membrane biogenesis protein BamB; Provisiona | 94.55 | |
| PF07893 | 342 | DUF1668: Protein of unknown function (DUF1668); In | 94.36 | |
| smart00612 | 47 | Kelch Kelch domain. | 94.24 | |
| PF07893 | 342 | DUF1668: Protein of unknown function (DUF1668); In | 94.04 | |
| PF13418 | 49 | Kelch_4: Galactose oxidase, central domain; PDB: 2 | 93.66 | |
| KOG0310 | 487 | consensus Conserved WD40 repeat-containing protein | 93.47 | |
| PF13964 | 50 | Kelch_6: Kelch motif | 93.12 | |
| TIGR01640 | 230 | F_box_assoc_1 F-box protein interaction domain. Th | 92.7 | |
| TIGR03074 | 764 | PQQ_membr_DH membrane-bound PQQ-dependent dehydrog | 92.45 | |
| TIGR03300 | 377 | assembly_YfgL outer membrane assembly lipoprotein | 92.44 | |
| PF01344 | 47 | Kelch_1: Kelch motif; InterPro: IPR006652 Kelch is | 92.43 | |
| smart00612 | 47 | Kelch Kelch domain. | 92.21 | |
| PLN02772 | 398 | guanylate kinase | 92.17 | |
| PF07762 | 131 | DUF1618: Protein of unknown function (DUF1618); In | 92.17 | |
| PF07646 | 49 | Kelch_2: Kelch motif; InterPro: IPR011498 Kelch is | 91.08 | |
| PF10282 | 345 | Lactonase: Lactonase, 7-bladed beta-propeller; Int | 90.91 | |
| PF02897 | 414 | Peptidase_S9_N: Prolyl oligopeptidase, N-terminal | 90.71 | |
| COG1520 | 370 | FOG: WD40-like repeat [Function unknown] | 90.48 | |
| PF08450 | 246 | SGL: SMP-30/Gluconolaconase/LRE-like region; Inter | 90.44 | |
| PF13415 | 49 | Kelch_3: Galactose oxidase, central domain | 90.17 | |
| TIGR03075 | 527 | PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methan | 89.87 | |
| KOG0647 | 347 | consensus mRNA export protein (contains WD40 repea | 89.5 | |
| PF05096 | 264 | Glu_cyclase_2: Glutamine cyclotransferase; InterPr | 88.99 | |
| PRK11028 | 330 | 6-phosphogluconolactonase; Provisional | 88.93 | |
| KOG2055 | 514 | consensus WD40 repeat protein [General function pr | 88.24 | |
| COG4257 | 353 | Vgb Streptogramin lyase [Defense mechanisms] | 88.19 | |
| KOG3545 | 249 | consensus Olfactomedin and related extracellular m | 88.12 | |
| PF01011 | 38 | PQQ: PQQ enzyme repeat family.; InterPro: IPR00237 | 87.52 | |
| PF08450 | 246 | SGL: SMP-30/Gluconolaconase/LRE-like region; Inter | 87.4 | |
| TIGR02658 | 352 | TTQ_MADH_Hv methylamine dehydrogenase heavy chain. | 87.28 | |
| PF13418 | 49 | Kelch_4: Galactose oxidase, central domain; PDB: 2 | 86.7 | |
| KOG4341 | 483 | consensus F-box protein containing LRR [General fu | 86.68 | |
| COG3055 | 381 | Uncharacterized protein conserved in bacteria [Fun | 86.67 | |
| PF10282 | 345 | Lactonase: Lactonase, 7-bladed beta-propeller; Int | 86.16 | |
| KOG0294 | 362 | consensus WD40 repeat-containing protein [Function | 85.42 | |
| PF06433 | 342 | Me-amine-dh_H: Methylamine dehydrogenase heavy cha | 85.21 | |
| KOG4152 | 830 | consensus Host cell transcription factor HCFC1 [Ce | 83.5 | |
| PF05096 | 264 | Glu_cyclase_2: Glutamine cyclotransferase; InterPr | 83.12 | |
| smart00564 | 33 | PQQ beta-propeller repeat. Beta-propeller repeat o | 82.11 | |
| COG2706 | 346 | 3-carboxymuconate cyclase [Carbohydrate transport | 81.82 | |
| PF13415 | 49 | Kelch_3: Galactose oxidase, central domain | 81.33 | |
| PRK04043 | 419 | tolB translocation protein TolB; Provisional | 81.16 | |
| PRK11028 | 330 | 6-phosphogluconolactonase; Provisional | 80.01 |
| >TIGR01640 F_box_assoc_1 F-box protein interaction domain | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.3e-34 Score=247.89 Aligned_cols=222 Identities=25% Similarity=0.363 Sum_probs=166.9
Q ss_pred EeeeceeEEeecCCccEEEEEeccccceeecCCcCCCCCCCCcceEEEeeecCCCCeEEEEEEEEcCCCCccEEEEEEec
Q 017748 103 IGSCNGLLALEDSRRNIMLLLNPLTKRHRVLPTFYRDLSRCVPSLEGFGFDVGSGDFKLVKILAFGKPMNYTEVAVFSLR 182 (366)
Q Consensus 103 ~~s~~Gll~~~~~~~~~~~V~NP~t~~~~~LP~~~~~~~~~~~~~~~lg~d~~~~~ykvv~~~~~~~~~~~~~~~vyss~ 182 (366)
+++||||+|+... ..++ ||||+||+++.||+++...........++|||+.+++||||++...........++||+++
T Consensus 1 ~~sCnGLlc~~~~-~~~~-V~NP~T~~~~~LP~~~~~~~~~~~~~~~~G~d~~~~~YKVv~~~~~~~~~~~~~~~Vys~~ 78 (230)
T TIGR01640 1 VVPCDGLICFSYG-KRLV-VWNPSTGQSRWLPTPKSRRSNKESDTYFLGYDPIEKQYKVLCFSDRSGNRNQSEHQVYTLG 78 (230)
T ss_pred CcccceEEEEecC-CcEE-EECCCCCCEEecCCCCCcccccccceEEEeecccCCcEEEEEEEeecCCCCCccEEEEEeC
Confidence 4799999998865 6788 9999999999999876432110122679999999999999999764322345689999999
Q ss_pred CCcEEEccCCCcceecCCcceEECCcEEEEEeeCCCCCCCcEEEEEECCCceee-eeCCCCccCCCCceEEEEEECCeEE
Q 017748 183 VNSWRRIQDFPYFWVTGTCSVFVNGALHWTAALNQDADRNDIIIAFDLKSEEFY-QVPLPPIVGIEGYYILLEALGGCLC 261 (366)
Q Consensus 183 t~~W~~~~~~~~~~~~~~~~v~~~G~lYw~~~~~~~~~~~~~i~~fD~~~~~~~-~i~lP~~~~~~~~~~~l~~~~g~L~ 261 (366)
+++||.+...+........+|++||.+||++....+. ....|++||+++|+|+ .+++|...........|++++|+|+
T Consensus 79 ~~~Wr~~~~~~~~~~~~~~~v~~~G~lyw~~~~~~~~-~~~~IvsFDl~~E~f~~~i~~P~~~~~~~~~~~L~~~~G~L~ 157 (230)
T TIGR01640 79 SNSWRTIECSPPHHPLKSRGVCINGVLYYLAYTLKTN-PDYFIVSFDVSSERFKEFIPLPCGNSDSVDYLSLINYKGKLA 157 (230)
T ss_pred CCCccccccCCCCccccCCeEEECCEEEEEEEECCCC-CcEEEEEEEcccceEeeeeecCccccccccceEEEEECCEEE
Confidence 9999998754433222233999999999999765321 1137999999999999 5899976522223568999999999
Q ss_pred EEEeecCCCCCCcEEEEEeccCCCCCceEEEEEeccCCC----ceeeEEEEecCCcEEEEEeeC--Ce-EEEEeCCCC
Q 017748 262 LLCKFDDDDDDRPWDLWVMKEYGVNDSWTKLATLLNVGG----GNVKPLVYSRSEDKVLLHAVR--GD-LCWYDLERH 332 (366)
Q Consensus 262 l~~~~~~~~~~~~l~iW~l~~~~~~~~W~~~~~i~~~~~----~~~~~~~~~~~g~~i~~~~~~--~~-~~~yd~~t~ 332 (366)
++......+ .++||+|++++. ..|+++++|+.... ....|.++..+| +|++.... ++ ++.||++|+
T Consensus 158 ~v~~~~~~~---~~~IWvl~d~~~-~~W~k~~~i~~~~~~~~~~~~~~~~~~~~g-~I~~~~~~~~~~~~~~y~~~~~ 230 (230)
T TIGR01640 158 VLKQKKDTN---NFDLWVLNDAGK-QEWSKLFTVPIPPLPDLVDDNFLSGFTDKG-EIVLCCEDENPFYIFYYNVGEN 230 (230)
T ss_pred EEEecCCCC---cEEEEEECCCCC-CceeEEEEEcCcchhhhhhheeEeEEeeCC-EEEEEeCCCCceEEEEEeccCC
Confidence 998864311 699999998865 45999999985322 124578888887 88887664 44 999999985
|
This model describes a large family of plant domains, with several hundred members in Arabidopsis thaliana. Most examples are found C-terminal to an F-box (pfam00646), a 60 amino acid motif involved in ubiquitination of target proteins to mark them for degradation. Two-hybid experiments support the idea that most members are interchangeable F-box subunits of SCF E3 complexes. Some members have two copies of this domain. |
| >PF07734 FBA_1: F-box associated; InterPro: IPR006527 This domain occurs in a diverse superfamily of genes in plants | Back alignment and domain information |
|---|
Probab=99.70 E-value=2.2e-15 Score=122.32 Aligned_cols=149 Identities=33% Similarity=0.558 Sum_probs=105.6
Q ss_pred ceEECCcEEEEEeeCCCCCCCcEEEEEECCCcee-eeeCCCCccCCCCceEEEEEE-CCeEEEEEeecCCCCCCcEEEEE
Q 017748 202 SVFVNGALHWTAALNQDADRNDIIIAFDLKSEEF-YQVPLPPIVGIEGYYILLEAL-GGCLCLLCKFDDDDDDRPWDLWV 279 (366)
Q Consensus 202 ~v~~~G~lYw~~~~~~~~~~~~~i~~fD~~~~~~-~~i~lP~~~~~~~~~~~l~~~-~g~L~l~~~~~~~~~~~~l~iW~ 279 (366)
+|++||.+||++....... ...|++||+++|+| ..+++|...........|++. +|+|+++....... .++||+
T Consensus 1 gV~vnG~~hW~~~~~~~~~-~~~IlsFDl~~E~F~~~~~lP~~~~~~~~~~~L~~v~~~~L~~~~~~~~~~---~~~IWv 76 (164)
T PF07734_consen 1 GVFVNGALHWLAYDENNDE-KDFILSFDLSTEKFGRSLPLPFCNDDDDDSVSLSVVRGDCLCVLYQCDETS---KIEIWV 76 (164)
T ss_pred CEEECCEEEeeEEecCCCC-ceEEEEEeccccccCCEECCCCccCccCCEEEEEEecCCEEEEEEeccCCc---cEEEEE
Confidence 6899999999998864321 12799999999999 888999887423456677555 78999997644321 699999
Q ss_pred eccCC-CCCceEEEEEeccCCCc-----eeeEEEEecCCcEEEEEeeC-------CeEEEEeCCCCeEEEeeeecCcccC
Q 017748 280 MKEYG-VNDSWTKLATLLNVGGG-----NVKPLVYSRSEDKVLLHAVR-------GDLCWYDLERHRVRSIVEIDDKVRR 346 (366)
Q Consensus 280 l~~~~-~~~~W~~~~~i~~~~~~-----~~~~~~~~~~g~~i~~~~~~-------~~~~~yd~~t~~~~~v~~~~~~~~~ 346 (366)
|++++ ...+|++..+|+..... +..+..+..++++++++.+. ..++.|+ +++..+++ +++.....
T Consensus 77 m~~~~~~~~SWtK~~~i~~~~~~~~~~~~~~~~~~i~~~~~vlv~~~~~~~~~~~~~i~i~g-~~~~~~~~-~~~~~~~~ 154 (164)
T PF07734_consen 77 MKKYGYGKESWTKLFTIDLPPLPSLFFHFRNPSFFIDEEKKVLVCCDKETQREEKNKIYIVG-EDGKFIEV-DIEDKSSC 154 (164)
T ss_pred EeeeccCcceEEEEEEEecCCCCCcccccccceEEEeCCCeEEEEEcCCCCccceeEEEEEc-CCCEEEEc-ccccCCCC
Confidence 99765 26899999999865441 11233333344466666432 2378888 88888888 77541346
Q ss_pred eeeeeEEecC
Q 017748 347 CDMRTVCVNT 356 (366)
Q Consensus 347 ~~~~~~y~~s 356 (366)
++..+.|+||
T Consensus 155 ~~~~~~YvpS 164 (164)
T PF07734_consen 155 WPSICNYVPS 164 (164)
T ss_pred CCCEEEECCC
Confidence 7888899987
|
Most examples are found C-terminal to an F-box (IPR001810 from INTERPRO), a 60 amino acid motif involved in ubiquitination of target proteins to mark them for degradation. Two-hybid experiments support the idea that most members are interchangeable F-box subunits of SCF E3 complexes []. Some members have two copies of this domain. |
| >PLN03215 ascorbic acid mannose pathway regulator 1; Provisional | Back alignment and domain information |
|---|
Probab=99.69 E-value=1.9e-14 Score=128.45 Aligned_cols=307 Identities=15% Similarity=0.098 Sum_probs=159.7
Q ss_pred CCCCCCCcHHHHHHHHccCC-cccceeeeccchhhhhhcCChhHHHHHHhcccccCCceEEEEeeecCCceeEEEeeccc
Q 017748 1 METSVQLPLDLIVDILIRLP-VRSLARFRCVSRSFRSLIDGQDFVNRYVNHSIETNSNLGLFVSVENSKWKRRYYSLSFD 79 (366)
Q Consensus 1 ~~~~~~LP~dll~~IL~rLP-~~~l~r~r~VcK~W~~li~s~~F~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~ 79 (366)
|++++.||+|||..|..||| ..++.|||+|||+||+.+.... + . .+ .+..+++++...... ..+.. +
T Consensus 1 ~~~Ws~Lp~dll~~i~~~l~~~~d~~~~~~vC~sWr~a~~~~~---~--~-~~-~~~~~~~~~~~~~~~--~~~~~---~ 68 (373)
T PLN03215 1 MADWSTLPEELLHMIAGRLFSNVELKRFRSICRSWRSSVSGVG---K--K-NP-FRTRPLILFNPINPS--ETLTD---D 68 (373)
T ss_pred CCChhhCCHHHHHHHHhhCCcHHHHHHHHhhhhhHHHhccccc---c--c-CC-cccccccccCcccCC--CCccc---c
Confidence 89999999999999999996 6689999999999999986410 0 0 00 000122222210000 00000 0
Q ss_pred ccCCCCcceecCCCccC-CCceE-EEeeeceeEEeec---CCccEEEEEeccccceeecCCcCCCCCCCC----cceEEE
Q 017748 80 QYAFDNCLEIDLPLMKN-CKFGF-IIGSCNGLLALED---SRRNIMLLLNPLTKRHRVLPTFYRDLSRCV----PSLEGF 150 (366)
Q Consensus 80 ~~~~~~~~~~~~~~~~~-~~~~~-~~~s~~Gll~~~~---~~~~~~~V~NP~t~~~~~LP~~~~~~~~~~----~~~~~l 150 (366)
.. ........+... ..+.. ..++..|++.-.. ...++. +.||+++.-..+|+-....-... ...+.+
T Consensus 69 --~~-~~~~~~~~ls~~~~~r~~~~~~~~~~WLik~~~~~~~~~~~-Ll~PLsr~~~~~~~~~lnll~f~v~ei~~~y~l 144 (373)
T PLN03215 69 --RS-YISRPGAFLSRAAFFRVTLSSSPSKGWLIKSDMDVNSGRFH-LLNPLSRLPLRHSSESVDLLEFTVSEIREAYQV 144 (373)
T ss_pred --cc-ccccccceeeeeEEEEeecCCCCCCCcEEEEeccccCCccE-ecCccccCccCCCCccceeeeeEEEEccceEEE
Confidence 00 000000000000 00000 1134678886654 346778 99999999887775332211100 011111
Q ss_pred -eeecC---CCCe--EEEEEEEEcCCCCccEEEEEEec------CCcEEEccCCCcceecCCcceEECCcEEEEEeeCCC
Q 017748 151 -GFDVG---SGDF--KLVKILAFGKPMNYTEVAVFSLR------VNSWRRIQDFPYFWVTGTCSVFVNGALHWTAALNQD 218 (366)
Q Consensus 151 -g~d~~---~~~y--kvv~~~~~~~~~~~~~~~vyss~------t~~W~~~~~~~~~~~~~~~~v~~~G~lYw~~~~~~~ 218 (366)
+.+.. ...| |++......++.....+.|+..+ .++|+.++.... .....++.+|.+|.+...+
T Consensus 145 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vl~i~~~g~l~~w~~~~Wt~l~~~~~---~~~DIi~~kGkfYAvD~~G-- 219 (373)
T PLN03215 145 LDWAKRRETRPGYQRSALVKVKEGDNHRDGVLGIGRDGKINYWDGNVLKALKQMGY---HFSDIIVHKGQTYALDSIG-- 219 (373)
T ss_pred EecccccccccceeEEEEEEeecCCCcceEEEEEeecCcEeeecCCeeeEccCCCc---eeeEEEEECCEEEEEcCCC--
Confidence 11110 0013 22222110111112233333222 478888764322 2355799999999995543
Q ss_pred CCCCcEEEEEECCCceeeeeC--CCCccC--CCCceEEEEEECCeEEEEEeecCCC------------CCCcEEEEEecc
Q 017748 219 ADRNDIIIAFDLKSEEFYQVP--LPPIVG--IEGYYILLEALGGCLCLLCKFDDDD------------DDRPWDLWVMKE 282 (366)
Q Consensus 219 ~~~~~~i~~fD~~~~~~~~i~--lP~~~~--~~~~~~~l~~~~g~L~l~~~~~~~~------------~~~~l~iW~l~~ 282 (366)
.+.++|.+-+ .+.+. +..... .......|++..|+|++|....... ....++|+.++.
T Consensus 220 -----~l~~i~~~l~-i~~v~~~i~~~~~~g~~~~~~yLVEs~GdLLmV~R~~~~~~~~~~~~~~~~~~t~~f~VfklD~ 293 (373)
T PLN03215 220 -----IVYWINSDLE-FSRFGTSLDENITDGCWTGDRRFVECCGELYIVERLPKESTWKRKADGFEYSRTVGFKVYKFDD 293 (373)
T ss_pred -----eEEEEecCCc-eeeecceecccccCCcccCceeEEEECCEEEEEEEEccCcccccccccccccceeEEEEEEEcC
Confidence 5777774322 12221 110010 1123567999999999998853210 123688899986
Q ss_pred CCCCCceEEEEEeccCCC--ceeeEEEE------ecCCcEEEEEeeCCeEEEEeCCCCeEEEe
Q 017748 283 YGVNDSWTKLATLLNVGG--GNVKPLVY------SRSEDKVLLHAVRGDLCWYDLERHRVRSI 337 (366)
Q Consensus 283 ~~~~~~W~~~~~i~~~~~--~~~~~~~~------~~~g~~i~~~~~~~~~~~yd~~t~~~~~v 337 (366)
. ..+|.++.+++...+ +.....++ ...++.||+..+.. ..+||++.++...+
T Consensus 294 ~--~~~WveV~sLgd~aLFlG~~~s~sv~a~e~pG~k~NcIYFtdd~~-~~v~~~~dg~~~~~ 353 (373)
T PLN03215 294 E--LAKWMEVKTLGDNAFVMATDTCFSVLAHEFYGCLPNSIYFTEDTM-PKVFKLDNGNGSSI 353 (373)
T ss_pred C--CCcEEEecccCCeEEEEECCccEEEecCCCCCccCCEEEEECCCc-ceEEECCCCCccce
Confidence 3 467999999876443 11111111 12346888887655 88999999997766
|
|
| >PF08268 FBA_3: F-box associated domain; InterPro: IPR013187 This domain occurs in a diverse superfamily of genes in plants | Back alignment and domain information |
|---|
Probab=99.59 E-value=4.7e-14 Score=109.72 Aligned_cols=112 Identities=22% Similarity=0.398 Sum_probs=83.8
Q ss_pred ceEECCcEEEEEeeCCCCCCCcEEEEEECCCceeeeeCCCCccCCCCceEEEEEECCeEEEEEeecCCCCCCcEEEEEec
Q 017748 202 SVFVNGALHWTAALNQDADRNDIIIAFDLKSEEFYQVPLPPIVGIEGYYILLEALGGCLCLLCKFDDDDDDRPWDLWVMK 281 (366)
Q Consensus 202 ~v~~~G~lYw~~~~~~~~~~~~~i~~fD~~~~~~~~i~lP~~~~~~~~~~~l~~~~g~L~l~~~~~~~~~~~~l~iW~l~ 281 (366)
|+++||++||++... ......|++||+++|+|+.|++|...........|.+++|+|+++....... ...++||+|+
T Consensus 1 gicinGvly~~a~~~--~~~~~~IvsFDv~~E~f~~i~~P~~~~~~~~~~~L~~~~G~L~~v~~~~~~~-~~~~~iWvLe 77 (129)
T PF08268_consen 1 GICINGVLYWLAWSE--DSDNNVIVSFDVRSEKFRFIKLPEDPYSSDCSSTLIEYKGKLALVSYNDQGE-PDSIDIWVLE 77 (129)
T ss_pred CEEECcEEEeEEEEC--CCCCcEEEEEEcCCceEEEEEeeeeeccccCccEEEEeCCeEEEEEecCCCC-cceEEEEEee
Confidence 689999999999882 2223699999999999999999932223345778999999999988876531 3469999999
Q ss_pred cCCCCCceEEEEEe-ccCCC-----ceeeEEEEecCCcEEEEE
Q 017748 282 EYGVNDSWTKLATL-LNVGG-----GNVKPLVYSRSEDKVLLH 318 (366)
Q Consensus 282 ~~~~~~~W~~~~~i-~~~~~-----~~~~~~~~~~~g~~i~~~ 318 (366)
+++. ++|++.+.+ +.... ....+.++..+| +|++.
T Consensus 78 D~~k-~~Wsk~~~~lp~~~~~~~~~~~~~~~g~~~~G-eiv~~ 118 (129)
T PF08268_consen 78 DYEK-QEWSKKHIVLPPSWQHFVHDCDFSFVGVTDTG-EIVFA 118 (129)
T ss_pred cccc-ceEEEEEEECChHHhcccCCcEEEEEEEcCCC-EEEEE
Confidence 9864 789998664 43221 136778888777 66666
|
Most examples are found C-terminal to an F-box (IPR001810 from INTERPRO), a 60 amino acid motif involved in ubiquitination of target proteins to mark them for degradation. Two-hybid experiments support the idea that most members are interchangeable F-box subunits of SCF E3 complexes []. Some members have two copies of this domain. |
| >PHA02713 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=99.56 E-value=7e-13 Score=127.98 Aligned_cols=197 Identities=10% Similarity=0.127 Sum_probs=131.7
Q ss_pred cEEEEEeccccceeecCCcCCCCCCCCcceEEEeeecCCCCeEEEEEEEEcCCCCccEEEEEEecCCcEEEccCCCccee
Q 017748 118 NIMLLLNPLTKRHRVLPTFYRDLSRCVPSLEGFGFDVGSGDFKLVKILAFGKPMNYTEVAVFSLRVNSWRRIQDFPYFWV 197 (366)
Q Consensus 118 ~~~~V~NP~t~~~~~LP~~~~~~~~~~~~~~~lg~d~~~~~ykvv~~~~~~~~~~~~~~~vyss~t~~W~~~~~~~~~~~ 197 (366)
.+. .+||.+++|..+|+++..+.. +..++++ + ||.+++..........+++|+..+++|+.++.+|....
T Consensus 321 ~v~-~Yd~~~n~W~~~~~m~~~R~~--~~~~~~~-----g--~IYviGG~~~~~~~~sve~Ydp~~~~W~~~~~mp~~r~ 390 (557)
T PHA02713 321 KVY-KINIENKIHVELPPMIKNRCR--FSLAVID-----D--TIYAIGGQNGTNVERTIECYTMGDDKWKMLPDMPIALS 390 (557)
T ss_pred eEE-EEECCCCeEeeCCCCcchhhc--eeEEEEC-----C--EEEEECCcCCCCCCceEEEEECCCCeEEECCCCCcccc
Confidence 466 899999999999998865532 2222221 2 44444322222234579999999999999998887654
Q ss_pred cCCcceEECCcEEEEEeeCCCC-----------------CCCcEEEEEECCCceeeee-CCCCccCCCCceEEEEEECCe
Q 017748 198 TGTCSVFVNGALHWTAALNQDA-----------------DRNDIIIAFDLKSEEFYQV-PLPPIVGIEGYYILLEALGGC 259 (366)
Q Consensus 198 ~~~~~v~~~G~lYw~~~~~~~~-----------------~~~~~i~~fD~~~~~~~~i-~lP~~~~~~~~~~~l~~~~g~ 259 (366)
.. ..+.++|.+|.+++..... .....+.+||+++++|+.+ ++|... ....+++.+|+
T Consensus 391 ~~-~~~~~~g~IYviGG~~~~~~~~~~~~~~~~~~~~~~~~~~~ve~YDP~td~W~~v~~m~~~r----~~~~~~~~~~~ 465 (557)
T PHA02713 391 SY-GMCVLDQYIYIIGGRTEHIDYTSVHHMNSIDMEEDTHSSNKVIRYDTVNNIWETLPNFWTGT----IRPGVVSHKDD 465 (557)
T ss_pred cc-cEEEECCEEEEEeCCCcccccccccccccccccccccccceEEEECCCCCeEeecCCCCccc----ccCcEEEECCE
Confidence 33 3678999999998754210 0134799999999999988 666654 34567899999
Q ss_pred EEEEEeecCCCCCCcE-EEEEeccCCCC-CceEEEEEeccCCCceeeEEEEecCCcEEEEEeeCC---eEEEEeCCCCeE
Q 017748 260 LCLLCKFDDDDDDRPW-DLWVMKEYGVN-DSWTKLATLLNVGGGNVKPLVYSRSEDKVLLHAVRG---DLCWYDLERHRV 334 (366)
Q Consensus 260 L~l~~~~~~~~~~~~l-~iW~l~~~~~~-~~W~~~~~i~~~~~~~~~~~~~~~~g~~i~~~~~~~---~~~~yd~~t~~~ 334 (366)
||++++..+.. ... .+-..+. .. ++|+.+..|+.... ..-.++ .+| +|++.+... .+-.||++|++|
T Consensus 466 IYv~GG~~~~~--~~~~~ve~Ydp--~~~~~W~~~~~m~~~r~--~~~~~~-~~~-~iyv~Gg~~~~~~~e~yd~~~~~W 537 (557)
T PHA02713 466 IYVVCDIKDEK--NVKTCIFRYNT--NTYNGWELITTTESRLS--ALHTIL-HDN-TIMMLHCYESYMLQDTFNVYTYEW 537 (557)
T ss_pred EEEEeCCCCCC--ccceeEEEecC--CCCCCeeEccccCcccc--cceeEE-ECC-EEEEEeeecceeehhhcCcccccc
Confidence 99998865321 011 1223332 23 47999988876442 222222 234 888876532 389999999999
Q ss_pred EEe
Q 017748 335 RSI 337 (366)
Q Consensus 335 ~~v 337 (366)
..+
T Consensus 538 ~~~ 540 (557)
T PHA02713 538 NHI 540 (557)
T ss_pred cch
Confidence 999
|
|
| >KOG4441 consensus Proteins containing BTB/POZ and Kelch domains, involved in regulatory/signal transduction processes [Signal transduction mechanisms; General function prediction only] | Back alignment and domain information |
|---|
Probab=99.49 E-value=2.5e-12 Score=123.80 Aligned_cols=198 Identities=14% Similarity=0.177 Sum_probs=139.8
Q ss_pred cEEEEEeccccceeecCCcCCCCCCCCcceEEEeeecCCCCeEEEEEEEEcCCCCccEEEEEEecCCcEEEccCCCccee
Q 017748 118 NIMLLLNPLTKRHRVLPTFYRDLSRCVPSLEGFGFDVGSGDFKLVKILAFGKPMNYTEVAVFSLRVNSWRRIQDFPYFWV 197 (366)
Q Consensus 118 ~~~~V~NP~t~~~~~LP~~~~~~~~~~~~~~~lg~d~~~~~ykvv~~~~~~~~~~~~~~~vyss~t~~W~~~~~~~~~~~ 197 (366)
... .+||.+++|..+|++...+.. ...+.+ ..++.++..++.......+|.|+..++.|..++.|+....
T Consensus 350 ~ve-~YD~~~~~W~~~a~M~~~R~~--~~v~~l-------~g~iYavGG~dg~~~l~svE~YDp~~~~W~~va~m~~~r~ 419 (571)
T KOG4441|consen 350 SVE-RYDPRTNQWTPVAPMNTKRSD--FGVAVL-------DGKLYAVGGFDGEKSLNSVECYDPVTNKWTPVAPMLTRRS 419 (571)
T ss_pred eEE-EecCCCCceeccCCccCcccc--ceeEEE-------CCEEEEEeccccccccccEEEecCCCCcccccCCCCccee
Confidence 456 899999999999999876653 221221 2345555443444556689999999999999998877433
Q ss_pred cCCcceEECCcEEEEEeeCCCCCCCcEEEEEECCCceeeee-CCCCccCCCCceEEEEEECCeEEEEEeecCCCCCCcEE
Q 017748 198 TGTCSVFVNGALHWTAALNQDADRNDIIIAFDLKSEEFYQV-PLPPIVGIEGYYILLEALGGCLCLLCKFDDDDDDRPWD 276 (366)
Q Consensus 198 ~~~~~v~~~G~lYw~~~~~~~~~~~~~i~~fD~~~~~~~~i-~lP~~~~~~~~~~~l~~~~g~L~l~~~~~~~~~~~~l~ 276 (366)
. ..++.++|.+|-+++..........+.+||+.+++|+.+ +++... ....+++++|+||++++.++.. .+.
T Consensus 420 ~-~gv~~~~g~iYi~GG~~~~~~~l~sve~YDP~t~~W~~~~~M~~~R----~~~g~a~~~~~iYvvGG~~~~~---~~~ 491 (571)
T KOG4441|consen 420 G-HGVAVLGGKLYIIGGGDGSSNCLNSVECYDPETNTWTLIAPMNTRR----SGFGVAVLNGKIYVVGGFDGTS---ALS 491 (571)
T ss_pred e-eEEEEECCEEEEEcCcCCCccccceEEEEcCCCCceeecCCccccc----ccceEEEECCEEEEECCccCCC---ccc
Confidence 3 337889999999998764433456999999999999998 888776 4455899999999999987632 221
Q ss_pred EEEeccCC-CCCceEEEEEeccCCCceeeEEEEecCCcEEEEEeeCC------eEEEEeCCCCeEEEeee
Q 017748 277 LWVMKEYG-VNDSWTKLATLLNVGGGNVKPLVYSRSEDKVLLHAVRG------DLCWYDLERHRVRSIVE 339 (366)
Q Consensus 277 iW~l~~~~-~~~~W~~~~~i~~~~~~~~~~~~~~~~g~~i~~~~~~~------~~~~yd~~t~~~~~v~~ 339 (366)
- .+.|+ ..++|..+..|.... .-.++...++.+++..... .+-.||+++++|..+.+
T Consensus 492 ~--VE~ydp~~~~W~~v~~m~~~r----s~~g~~~~~~~ly~vGG~~~~~~l~~ve~ydp~~d~W~~~~~ 555 (571)
T KOG4441|consen 492 S--VERYDPETNQWTMVAPMTSPR----SAVGVVVLGGKLYAVGGFDGNNNLNTVECYDPETDTWTEVTE 555 (571)
T ss_pred e--EEEEcCCCCceeEcccCcccc----ccccEEEECCEEEEEecccCccccceeEEcCCCCCceeeCCC
Confidence 1 23232 357899997666543 2233333344788875422 39999999999999944
|
|
| >KOG4441 consensus Proteins containing BTB/POZ and Kelch domains, involved in regulatory/signal transduction processes [Signal transduction mechanisms; General function prediction only] | Back alignment and domain information |
|---|
Probab=99.45 E-value=7.6e-12 Score=120.50 Aligned_cols=200 Identities=15% Similarity=0.184 Sum_probs=141.0
Q ss_pred cEEEEEeccccceeecCCcCCCCCCCCcceEEEeeecCCCCeEEEEEEEEc-CCCCccEEEEEEecCCcEEEccCCCcce
Q 017748 118 NIMLLLNPLTKRHRVLPTFYRDLSRCVPSLEGFGFDVGSGDFKLVKILAFG-KPMNYTEVAVFSLRVNSWRRIQDFPYFW 196 (366)
Q Consensus 118 ~~~~V~NP~t~~~~~LP~~~~~~~~~~~~~~~lg~d~~~~~ykvv~~~~~~-~~~~~~~~~vyss~t~~W~~~~~~~~~~ 196 (366)
... .+||.+++|..+.+++..+.. ...+.++ + +|..++..+ .......+++|++.+++|..++.|....
T Consensus 302 ~ve-~yd~~~~~w~~~a~m~~~r~~--~~~~~~~-----~--~lYv~GG~~~~~~~l~~ve~YD~~~~~W~~~a~M~~~R 371 (571)
T KOG4441|consen 302 SVE-CYDPKTNEWSSLAPMPSPRCR--VGVAVLN-----G--KLYVVGGYDSGSDRLSSVERYDPRTNQWTPVAPMNTKR 371 (571)
T ss_pred eeE-EecCCcCcEeecCCCCccccc--ccEEEEC-----C--EEEEEccccCCCcccceEEEecCCCCceeccCCccCcc
Confidence 344 789999999999999866542 2222222 1 444444333 2355679999999999999998887655
Q ss_pred ecCCcceEECCcEEEEEeeCCCCCCCcEEEEEECCCceeeee-CCCCccCCCCceEEEEEECCeEEEEEeecCCCCCCcE
Q 017748 197 VTGTCSVFVNGALHWTAALNQDADRNDIIIAFDLKSEEFYQV-PLPPIVGIEGYYILLEALGGCLCLLCKFDDDDDDRPW 275 (366)
Q Consensus 197 ~~~~~~v~~~G~lYw~~~~~~~~~~~~~i~~fD~~~~~~~~i-~lP~~~~~~~~~~~l~~~~g~L~l~~~~~~~~~~~~l 275 (366)
.... .+.++|.+|.+++.. +......+..||+.+++|+.+ +++... .....++.+|+||++++..... -
T Consensus 372 ~~~~-v~~l~g~iYavGG~d-g~~~l~svE~YDp~~~~W~~va~m~~~r----~~~gv~~~~g~iYi~GG~~~~~----~ 441 (571)
T KOG4441|consen 372 SDFG-VAVLDGKLYAVGGFD-GEKSLNSVECYDPVTNKWTPVAPMLTRR----SGHGVAVLGGKLYIIGGGDGSS----N 441 (571)
T ss_pred ccce-eEEECCEEEEEeccc-cccccccEEEecCCCCcccccCCCCcce----eeeEEEEECCEEEEEcCcCCCc----c
Confidence 4333 678999999999876 333445899999999999998 687754 5667889999999999976631 1
Q ss_pred EEEEeccCC-CCCceEEEEEeccCCCceeeEEEEecCCcEEEEEeeCC------eEEEEeCCCCeEEEeeeec
Q 017748 276 DLWVMKEYG-VNDSWTKLATLLNVGGGNVKPLVYSRSEDKVLLHAVRG------DLCWYDLERHRVRSIVEID 341 (366)
Q Consensus 276 ~iW~l~~~~-~~~~W~~~~~i~~~~~~~~~~~~~~~~g~~i~~~~~~~------~~~~yd~~t~~~~~v~~~~ 341 (366)
.+=.++-|+ ..++|..+..|+.... ...+++. ++ .||.+.... .+-.||+++++|..+..+.
T Consensus 442 ~l~sve~YDP~t~~W~~~~~M~~~R~--~~g~a~~-~~-~iYvvGG~~~~~~~~~VE~ydp~~~~W~~v~~m~ 510 (571)
T KOG4441|consen 442 CLNSVECYDPETNTWTLIAPMNTRRS--GFGVAVL-NG-KIYVVGGFDGTSALSSVERYDPETNQWTMVAPMT 510 (571)
T ss_pred ccceEEEEcCCCCceeecCCcccccc--cceEEEE-CC-EEEEECCccCCCccceEEEEcCCCCceeEcccCc
Confidence 111223332 4578999999887653 3334443 33 788886522 3899999999999994454
|
|
| >PHA03098 kelch-like protein; Provisional | Back alignment and domain information |
|---|
Probab=99.43 E-value=2.1e-11 Score=118.30 Aligned_cols=199 Identities=15% Similarity=0.184 Sum_probs=130.8
Q ss_pred cEEEEEeccccceeecCCcCCCCCCCCcceEEEeeecCCCCeEEEEEEEEcCCCCccEEEEEEecCCcEEEccCCCccee
Q 017748 118 NIMLLLNPLTKRHRVLPTFYRDLSRCVPSLEGFGFDVGSGDFKLVKILAFGKPMNYTEVAVFSLRVNSWRRIQDFPYFWV 197 (366)
Q Consensus 118 ~~~~V~NP~t~~~~~LP~~~~~~~~~~~~~~~lg~d~~~~~ykvv~~~~~~~~~~~~~~~vyss~t~~W~~~~~~~~~~~ 197 (366)
.++ .+||.|++|..+|+++.++.. ...+.++ + ++..++..........+++|+..+++|+..+.+|....
T Consensus 312 ~v~-~yd~~~~~W~~~~~~~~~R~~--~~~~~~~-----~--~lyv~GG~~~~~~~~~v~~yd~~~~~W~~~~~lp~~r~ 381 (534)
T PHA03098 312 SVV-SYDTKTKSWNKVPELIYPRKN--PGVTVFN-----N--RIYVIGGIYNSISLNTVESWKPGESKWREEPPLIFPRY 381 (534)
T ss_pred cEE-EEeCCCCeeeECCCCCccccc--ceEEEEC-----C--EEEEEeCCCCCEecceEEEEcCCCCceeeCCCcCcCCc
Confidence 577 999999999999988755432 2222221 2 23333322222335578999999999999988876543
Q ss_pred cCCcceEECCcEEEEEeeCCCCCCCcEEEEEECCCceeeee-CCCCccCCCCceEEEEEECCeEEEEEeecCCCCC-CcE
Q 017748 198 TGTCSVFVNGALHWTAALNQDADRNDIIIAFDLKSEEFYQV-PLPPIVGIEGYYILLEALGGCLCLLCKFDDDDDD-RPW 275 (366)
Q Consensus 198 ~~~~~v~~~G~lYw~~~~~~~~~~~~~i~~fD~~~~~~~~i-~lP~~~~~~~~~~~l~~~~g~L~l~~~~~~~~~~-~~l 275 (366)
. ..++.++|.+|.+++..........+..||+.+++|..+ ++|... .....+..+|+||++++....+.. ..-
T Consensus 382 ~-~~~~~~~~~iYv~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~p~~r----~~~~~~~~~~~iyv~GG~~~~~~~~~~~ 456 (534)
T PHA03098 382 N-PCVVNVNNLIYVIGGISKNDELLKTVECFSLNTNKWSKGSPLPISH----YGGCAIYHDGKIYVIGGISYIDNIKVYN 456 (534)
T ss_pred c-ceEEEECCEEEEECCcCCCCcccceEEEEeCCCCeeeecCCCCccc----cCceEEEECCEEEEECCccCCCCCcccc
Confidence 3 335779999999988543222235799999999999988 666554 233467789999999886542111 012
Q ss_pred EEEEeccCCCCCceEEEEEeccCCCceeeEEEEecCCcEEEEEeeC------CeEEEEeCCCCeEEEe
Q 017748 276 DLWVMKEYGVNDSWTKLATLLNVGGGNVKPLVYSRSEDKVLLHAVR------GDLCWYDLERHRVRSI 337 (366)
Q Consensus 276 ~iW~l~~~~~~~~W~~~~~i~~~~~~~~~~~~~~~~g~~i~~~~~~------~~~~~yd~~t~~~~~v 337 (366)
.+|..+. ..++|+++..++.... ....++ .++ .|++.... ..+..||+++++|+.+
T Consensus 457 ~v~~yd~--~~~~W~~~~~~~~~r~--~~~~~~-~~~-~iyv~GG~~~~~~~~~v~~yd~~~~~W~~~ 518 (534)
T PHA03098 457 IVESYNP--VTNKWTELSSLNFPRI--NASLCI-FNN-KIYVVGGDKYEYYINEIEVYDDKTNTWTLF 518 (534)
T ss_pred eEEEecC--CCCceeeCCCCCcccc--cceEEE-ECC-EEEEEcCCcCCcccceeEEEeCCCCEEEec
Confidence 3666665 3468999876654332 222222 244 77776542 2499999999999988
|
|
| >PHA02713 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=99.42 E-value=2.4e-11 Score=117.36 Aligned_cols=202 Identities=10% Similarity=0.108 Sum_probs=131.5
Q ss_pred cEEEEEeccccceeecCCcCCCCCCCCcceEEEeeecCCCCeEEEEEEEEc-CCCCccEEEEEEecCCcEEEccCCCcce
Q 017748 118 NIMLLLNPLTKRHRVLPTFYRDLSRCVPSLEGFGFDVGSGDFKLVKILAFG-KPMNYTEVAVFSLRVNSWRRIQDFPYFW 196 (366)
Q Consensus 118 ~~~~V~NP~t~~~~~LP~~~~~~~~~~~~~~~lg~d~~~~~ykvv~~~~~~-~~~~~~~~~vyss~t~~W~~~~~~~~~~ 196 (366)
... .+||.+++|..++++|..+.. ...+.+ +. +|..++... .......++.|+..++.|..++.|+...
T Consensus 273 ~v~-~yd~~~~~W~~l~~mp~~r~~--~~~a~l------~~-~IYviGG~~~~~~~~~~v~~Yd~~~n~W~~~~~m~~~R 342 (557)
T PHA02713 273 CIL-VYNINTMEYSVISTIPNHIIN--YASAIV------DN-EIIIAGGYNFNNPSLNKVYKINIENKIHVELPPMIKNR 342 (557)
T ss_pred CEE-EEeCCCCeEEECCCCCccccc--eEEEEE------CC-EEEEEcCCCCCCCccceEEEEECCCCeEeeCCCCcchh
Confidence 356 889999999999988765432 111111 12 344443211 1123467899999999999999887654
Q ss_pred ecCCcceEECCcEEEEEeeCCCCCCCcEEEEEECCCceeeee-CCCCccCCCCceEEEEEECCeEEEEEeecCCCC----
Q 017748 197 VTGTCSVFVNGALHWTAALNQDADRNDIIIAFDLKSEEFYQV-PLPPIVGIEGYYILLEALGGCLCLLCKFDDDDD---- 271 (366)
Q Consensus 197 ~~~~~~v~~~G~lYw~~~~~~~~~~~~~i~~fD~~~~~~~~i-~lP~~~~~~~~~~~l~~~~g~L~l~~~~~~~~~---- 271 (366)
.. ...+.++|++|.+++.... .....+.+||+.+++|..+ ++|... .....++++|+||++++......
T Consensus 343 ~~-~~~~~~~g~IYviGG~~~~-~~~~sve~Ydp~~~~W~~~~~mp~~r----~~~~~~~~~g~IYviGG~~~~~~~~~~ 416 (557)
T PHA02713 343 CR-FSLAVIDDTIYAIGGQNGT-NVERTIECYTMGDDKWKMLPDMPIAL----SSYGMCVLDQYIYIIGGRTEHIDYTSV 416 (557)
T ss_pred hc-eeEEEECCEEEEECCcCCC-CCCceEEEEECCCCeEEECCCCCccc----ccccEEEECCEEEEEeCCCcccccccc
Confidence 33 3468899999999986422 2234799999999999988 777665 33456788999999988653100
Q ss_pred ------------CCcEEEEEeccCCCCCceEEEEEeccCCCceeeEEEEecCCcEEEEEeeC-------CeEEEEeCCC-
Q 017748 272 ------------DRPWDLWVMKEYGVNDSWTKLATLLNVGGGNVKPLVYSRSEDKVLLHAVR-------GDLCWYDLER- 331 (366)
Q Consensus 272 ------------~~~l~iW~l~~~~~~~~W~~~~~i~~~~~~~~~~~~~~~~g~~i~~~~~~-------~~~~~yd~~t- 331 (366)
...-.+...+. ..++|+.+..++.... ...++..+| .||+.... ..+..||+++
T Consensus 417 ~~~~~~~~~~~~~~~~~ve~YDP--~td~W~~v~~m~~~r~---~~~~~~~~~-~IYv~GG~~~~~~~~~~ve~Ydp~~~ 490 (557)
T PHA02713 417 HHMNSIDMEEDTHSSNKVIRYDT--VNNIWETLPNFWTGTI---RPGVVSHKD-DIYVVCDIKDEKNVKTCIFRYNTNTY 490 (557)
T ss_pred cccccccccccccccceEEEECC--CCCeEeecCCCCcccc---cCcEEEECC-EEEEEeCCCCCCccceeEEEecCCCC
Confidence 00112333333 3468998877765432 222223344 88887542 1267999999
Q ss_pred CeEEEeeeec
Q 017748 332 HRVRSIVEID 341 (366)
Q Consensus 332 ~~~~~v~~~~ 341 (366)
++|+.+..++
T Consensus 491 ~~W~~~~~m~ 500 (557)
T PHA02713 491 NGWELITTTE 500 (557)
T ss_pred CCeeEccccC
Confidence 8999985554
|
|
| >PHA02790 Kelch-like protein; Provisional | Back alignment and domain information |
|---|
Probab=99.33 E-value=2.1e-10 Score=109.23 Aligned_cols=183 Identities=13% Similarity=0.078 Sum_probs=122.6
Q ss_pred cEEEEEeccccceeecCCcCCCCCCCCcceEEEeeecCCCCeEEEEEEEEcCCCCccEEEEEEecCCcEEEccCCCccee
Q 017748 118 NIMLLLNPLTKRHRVLPTFYRDLSRCVPSLEGFGFDVGSGDFKLVKILAFGKPMNYTEVAVFSLRVNSWRRIQDFPYFWV 197 (366)
Q Consensus 118 ~~~~V~NP~t~~~~~LP~~~~~~~~~~~~~~~lg~d~~~~~ykvv~~~~~~~~~~~~~~~vyss~t~~W~~~~~~~~~~~ 197 (366)
... .+||.++.|..+|+++.++.. ...+. .+ + +|.+++... ....++.|+..+++|..++++|....
T Consensus 288 ~v~-~Ydp~~~~W~~~~~m~~~r~~--~~~v~--~~---~--~iYviGG~~---~~~sve~ydp~~n~W~~~~~l~~~r~ 354 (480)
T PHA02790 288 NAI-AVNYISNNWIPIPPMNSPRLY--ASGVP--AN---N--KLYVVGGLP---NPTSVERWFHGDAAWVNMPSLLKPRC 354 (480)
T ss_pred eEE-EEECCCCEEEECCCCCchhhc--ceEEE--EC---C--EEEEECCcC---CCCceEEEECCCCeEEECCCCCCCCc
Confidence 455 789999999999998765432 22221 11 2 333333211 12458999999999999998886543
Q ss_pred cCCcceEECCcEEEEEeeCCCCCCCcEEEEEECCCceeeee-CCCCccCCCCceEEEEEECCeEEEEEeecCCCCCCcEE
Q 017748 198 TGTCSVFVNGALHWTAALNQDADRNDIIIAFDLKSEEFYQV-PLPPIVGIEGYYILLEALGGCLCLLCKFDDDDDDRPWD 276 (366)
Q Consensus 198 ~~~~~v~~~G~lYw~~~~~~~~~~~~~i~~fD~~~~~~~~i-~lP~~~~~~~~~~~l~~~~g~L~l~~~~~~~~~~~~l~ 276 (366)
. ..++.++|.+|.+++.... ...+.+||+++++|+.+ ++|... .....++.+|+||++++. .+
T Consensus 355 ~-~~~~~~~g~IYviGG~~~~---~~~ve~ydp~~~~W~~~~~m~~~r----~~~~~~~~~~~IYv~GG~--------~e 418 (480)
T PHA02790 355 N-PAVASINNVIYVIGGHSET---DTTTEYLLPNHDQWQFGPSTYYPH----YKSCALVFGRRLFLVGRN--------AE 418 (480)
T ss_pred c-cEEEEECCEEEEecCcCCC---CccEEEEeCCCCEEEeCCCCCCcc----ccceEEEECCEEEEECCc--------eE
Confidence 2 3467899999999886422 14688999999999988 555544 334567899999999852 22
Q ss_pred EEEeccCCCCCceEEEEEeccCCCceeeEEEEecCCcEEEEEeeC------CeEEEEeCCCCeEEEe
Q 017748 277 LWVMKEYGVNDSWTKLATLLNVGGGNVKPLVYSRSEDKVLLHAVR------GDLCWYDLERHRVRSI 337 (366)
Q Consensus 277 iW~l~~~~~~~~W~~~~~i~~~~~~~~~~~~~~~~g~~i~~~~~~------~~~~~yd~~t~~~~~v 337 (366)
++ +. ..++|+.+..++.... ..-++..+| +|++.+.. ..+..||+++++|+.-
T Consensus 419 ~y--dp--~~~~W~~~~~m~~~r~---~~~~~v~~~-~IYviGG~~~~~~~~~ve~Yd~~~~~W~~~ 477 (480)
T PHA02790 419 FY--CE--SSNTWTLIDDPIYPRD---NPELIIVDN-KLLLIGGFYRGSYIDTIEVYNNRTYSWNIW 477 (480)
T ss_pred Ee--cC--CCCcEeEcCCCCCCcc---ccEEEEECC-EEEEECCcCCCcccceEEEEECCCCeEEec
Confidence 22 21 2467999877765332 222223344 88887642 2489999999999865
|
|
| >PLN02153 epithiospecifier protein | Back alignment and domain information |
|---|
Probab=99.31 E-value=2.6e-09 Score=97.59 Aligned_cols=209 Identities=11% Similarity=0.095 Sum_probs=121.7
Q ss_pred ccEEEEEeccccceeecCCcCC-CCCCCCcceEEEeeecCCCCeEEEEEEEEcCCCCccEEEEEEecCCcEEEccCC---
Q 017748 117 RNIMLLLNPLTKRHRVLPTFYR-DLSRCVPSLEGFGFDVGSGDFKLVKILAFGKPMNYTEVAVFSLRVNSWRRIQDF--- 192 (366)
Q Consensus 117 ~~~~~V~NP~t~~~~~LP~~~~-~~~~~~~~~~~lg~d~~~~~ykvv~~~~~~~~~~~~~~~vyss~t~~W~~~~~~--- 192 (366)
..++ ++||.+++|..+|+... ++.. .....+..++ + +|+.+.-.........+++|+..+++|+.++.+
T Consensus 50 ~~~~-~yd~~~~~W~~~~~~~~~p~~~-~~~~~~~~~~---~--~iyv~GG~~~~~~~~~v~~yd~~t~~W~~~~~~~~~ 122 (341)
T PLN02153 50 KDLY-VFDFNTHTWSIAPANGDVPRIS-CLGVRMVAVG---T--KLYIFGGRDEKREFSDFYSYDTVKNEWTFLTKLDEE 122 (341)
T ss_pred CcEE-EEECCCCEEEEcCccCCCCCCc-cCceEEEEEC---C--EEEEECCCCCCCccCcEEEEECCCCEEEEeccCCCC
Confidence 3578 99999999999887542 2211 1111111111 2 344443222222345789999999999988765
Q ss_pred --CcceecCCcceEECCcEEEEEeeCCCC-----CCCcEEEEEECCCceeeeeCCCCccCCCCceEEEEEECCeEEEEEe
Q 017748 193 --PYFWVTGTCSVFVNGALHWTAALNQDA-----DRNDIIIAFDLKSEEFYQVPLPPIVGIEGYYILLEALGGCLCLLCK 265 (366)
Q Consensus 193 --~~~~~~~~~~v~~~G~lYw~~~~~~~~-----~~~~~i~~fD~~~~~~~~i~lP~~~~~~~~~~~l~~~~g~L~l~~~ 265 (366)
|... .....+..+|++|.+++..... .....+.+||+++++|..++.+......+....+++.+|+||++..
T Consensus 123 ~~p~~R-~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~v~~yd~~~~~W~~l~~~~~~~~~r~~~~~~~~~~~iyv~GG 201 (341)
T PLN02153 123 GGPEAR-TFHSMASDENHVYVFGGVSKGGLMKTPERFRTIEAYNIADGKWVQLPDPGENFEKRGGAGFAVVQGKIWVVYG 201 (341)
T ss_pred CCCCCc-eeeEEEEECCEEEEECCccCCCccCCCcccceEEEEECCCCeEeeCCCCCCCCCCCCcceEEEECCeEEEEec
Confidence 3222 2334678899999998764321 1123689999999999987533211011123356778999999876
Q ss_pred ecCC------CCCCcEEEEEeccCCCCCceEEEEEeccCCC-ceeeEEEEecCCcEEEEEeeC---------------Ce
Q 017748 266 FDDD------DDDRPWDLWVMKEYGVNDSWTKLATLLNVGG-GNVKPLVYSRSEDKVLLHAVR---------------GD 323 (366)
Q Consensus 266 ~~~~------~~~~~l~iW~l~~~~~~~~W~~~~~i~~~~~-~~~~~~~~~~~g~~i~~~~~~---------------~~ 323 (366)
.... .....-+++.++- ...+|+++........ ......++ . ++.|++.... ..
T Consensus 202 ~~~~~~~gG~~~~~~~~v~~yd~--~~~~W~~~~~~g~~P~~r~~~~~~~-~-~~~iyv~GG~~~~~~~~~~~~~~~~n~ 277 (341)
T PLN02153 202 FATSILPGGKSDYESNAVQFFDP--ASGKWTEVETTGAKPSARSVFAHAV-V-GKYIIIFGGEVWPDLKGHLGPGTLSNE 277 (341)
T ss_pred cccccccCCccceecCceEEEEc--CCCcEEeccccCCCCCCcceeeeEE-E-CCEEEEECcccCCcccccccccccccc
Confidence 4321 0000124566654 2467999875432111 11222222 2 3367776442 14
Q ss_pred EEEEeCCCCeEEEe
Q 017748 324 LCWYDLERHRVRSI 337 (366)
Q Consensus 324 ~~~yd~~t~~~~~v 337 (366)
++.||+++++|+.+
T Consensus 278 v~~~d~~~~~W~~~ 291 (341)
T PLN02153 278 GYALDTETLVWEKL 291 (341)
T ss_pred EEEEEcCccEEEec
Confidence 89999999999998
|
|
| >TIGR03547 muta_rot_YjhT mutatrotase, YjhT family | Back alignment and domain information |
|---|
Probab=99.26 E-value=3.4e-09 Score=97.13 Aligned_cols=209 Identities=17% Similarity=0.188 Sum_probs=125.4
Q ss_pred ccEEEEEec--cccceeecCCcCC-CCCCCCcceEEEeeecCCCCeEEEEEEEEcCC------CCccEEEEEEecCCcEE
Q 017748 117 RNIMLLLNP--LTKRHRVLPTFYR-DLSRCVPSLEGFGFDVGSGDFKLVKILAFGKP------MNYTEVAVFSLRVNSWR 187 (366)
Q Consensus 117 ~~~~~V~NP--~t~~~~~LP~~~~-~~~~~~~~~~~lg~d~~~~~ykvv~~~~~~~~------~~~~~~~vyss~t~~W~ 187 (366)
..++ ++++ .+++|..+|+++. .+. ....+.+ + + +|.++.-.... .....++.|+..+++|+
T Consensus 29 ~~~~-~~d~~~~~~~W~~l~~~p~~~R~--~~~~~~~--~---~--~iYv~GG~~~~~~~~~~~~~~~v~~Yd~~~~~W~ 98 (346)
T TIGR03547 29 TSWY-KLDLKKPSKGWQKIADFPGGPRN--QAVAAAI--D---G--KLYVFGGIGKANSEGSPQVFDDVYRYDPKKNSWQ 98 (346)
T ss_pred CeeE-EEECCCCCCCceECCCCCCCCcc--cceEEEE--C---C--EEEEEeCCCCCCCCCcceecccEEEEECCCCEEe
Confidence 4567 7774 6789999998873 332 1222222 1 2 34444322111 12357999999999999
Q ss_pred EccC-CCcceecCCcce-EECCcEEEEEeeCCCC---------------------------------CCCcEEEEEECCC
Q 017748 188 RIQD-FPYFWVTGTCSV-FVNGALHWTAALNQDA---------------------------------DRNDIIIAFDLKS 232 (366)
Q Consensus 188 ~~~~-~~~~~~~~~~~v-~~~G~lYw~~~~~~~~---------------------------------~~~~~i~~fD~~~ 232 (366)
.++. +|.... ...++ .++|+||.+++..... .....+.+||+++
T Consensus 99 ~~~~~~p~~~~-~~~~~~~~~g~IYviGG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~YDp~t 177 (346)
T TIGR03547 99 KLDTRSPVGLL-GASGFSLHNGQAYFTGGVNKNIFDGYFADLSAADKDSEPKDKLIAAYFSQPPEDYFWNKNVLSYDPST 177 (346)
T ss_pred cCCCCCCCccc-ceeEEEEeCCEEEEEcCcChHHHHHHHhhHhhcCccchhhhhhHHHHhCCChhHcCccceEEEEECCC
Confidence 9863 333221 12123 5899999998754210 0024799999999
Q ss_pred ceeeee-CCCCccCCCCceEEEEEECCeEEEEEeecCCCCCCcEEEEEeccCCCCCceEEEEEeccCCC----ceeeEEE
Q 017748 233 EEFYQV-PLPPIVGIEGYYILLEALGGCLCLLCKFDDDDDDRPWDLWVMKEYGVNDSWTKLATLLNVGG----GNVKPLV 307 (366)
Q Consensus 233 ~~~~~i-~lP~~~~~~~~~~~l~~~~g~L~l~~~~~~~~~~~~l~iW~l~~~~~~~~W~~~~~i~~~~~----~~~~~~~ 307 (366)
++|+.+ ++|.... ....++..+|+||++++.... ......+|..+-.....+|+++..++.... +.....+
T Consensus 178 ~~W~~~~~~p~~~r---~~~~~~~~~~~iyv~GG~~~~-~~~~~~~~~y~~~~~~~~W~~~~~m~~~r~~~~~~~~~~~a 253 (346)
T TIGR03547 178 NQWRNLGENPFLGT---AGSAIVHKGNKLLLINGEIKP-GLRTAEVKQYLFTGGKLEWNKLPPLPPPKSSSQEGLAGAFA 253 (346)
T ss_pred CceeECccCCCCcC---CCceEEEECCEEEEEeeeeCC-CccchheEEEEecCCCceeeecCCCCCCCCCccccccEEee
Confidence 999998 6764321 344577889999999987532 122345665542223467999887764321 0011112
Q ss_pred EecCCcEEEEEeeC-----------------------CeEEEEeCCCCeEEEeeeec
Q 017748 308 YSRSEDKVLLHAVR-----------------------GDLCWYDLERHRVRSIVEID 341 (366)
Q Consensus 308 ~~~~g~~i~~~~~~-----------------------~~~~~yd~~t~~~~~v~~~~ 341 (366)
+..++ +|++.... ..+-+||+++++|+.+..++
T Consensus 254 ~~~~~-~Iyv~GG~~~~~~~~~~~~~~~~~~~~~~~~~~~e~yd~~~~~W~~~~~lp 309 (346)
T TIGR03547 254 GISNG-VLLVAGGANFPGAQENYKNGKLYAHEGLIKAWSSEVYALDNGKWSKVGKLP 309 (346)
T ss_pred eEECC-EEEEeecCCCCCchhhhhcCCccccCCCCceeEeeEEEecCCcccccCCCC
Confidence 23344 78877532 13679999999999884444
|
Members of this protein family contain multiple copies of the beta-propeller-forming Kelch repeat. All are full-length homologs to YjhT of Escherichia coli, which has been identified as a mutarotase for sialic acid. This protein improves bacterial ability to obtain host sialic acid, and thus serves as a virulence factor. Some bacteria carry what appears to be a cyclically permuted homolog of this protein. |
| >PLN02193 nitrile-specifier protein | Back alignment and domain information |
|---|
Probab=99.23 E-value=3.8e-09 Score=100.42 Aligned_cols=204 Identities=11% Similarity=0.097 Sum_probs=123.8
Q ss_pred cEEEEEeccccceeecCCcC-CCCCCCCcceEEEeeecCCCCeEEEEEEEEcCCCCccEEEEEEecCCcEEEccCC---C
Q 017748 118 NIMLLLNPLTKRHRVLPTFY-RDLSRCVPSLEGFGFDVGSGDFKLVKILAFGKPMNYTEVAVFSLRVNSWRRIQDF---P 193 (366)
Q Consensus 118 ~~~~V~NP~t~~~~~LP~~~-~~~~~~~~~~~~lg~d~~~~~ykvv~~~~~~~~~~~~~~~vyss~t~~W~~~~~~---~ 193 (366)
.++ ++||.+.+|..+|+.. .+... .....+..++ . ++..+.-.........+++|++.+++|+.++.+ |
T Consensus 194 ~v~-~yD~~~~~W~~~~~~g~~P~~~-~~~~~~v~~~----~-~lYvfGG~~~~~~~ndv~~yD~~t~~W~~l~~~~~~P 266 (470)
T PLN02193 194 HLY-VFDLETRTWSISPATGDVPHLS-CLGVRMVSIG----S-TLYVFGGRDASRQYNGFYSFDTTTNEWKLLTPVEEGP 266 (470)
T ss_pred cEE-EEECCCCEEEeCCCCCCCCCCc-ccceEEEEEC----C-EEEEECCCCCCCCCccEEEEECCCCEEEEcCcCCCCC
Confidence 478 9999999999887542 11111 0111111121 1 333332212222345789999999999998766 3
Q ss_pred cceecCCcceEECCcEEEEEeeCCCCCCCcEEEEEECCCceeeeeCCCCccCCCCceEEEEEECCeEEEEEeecCCCCCC
Q 017748 194 YFWVTGTCSVFVNGALHWTAALNQDADRNDIIIAFDLKSEEFYQVPLPPIVGIEGYYILLEALGGCLCLLCKFDDDDDDR 273 (366)
Q Consensus 194 ~~~~~~~~~v~~~G~lYw~~~~~~~~~~~~~i~~fD~~~~~~~~i~lP~~~~~~~~~~~l~~~~g~L~l~~~~~~~~~~~ 273 (366)
.... ....+.+++++|.+++.... .....+.+||+.+++|+.++.|......+....+++.+|+++++.......
T Consensus 267 ~~R~-~h~~~~~~~~iYv~GG~~~~-~~~~~~~~yd~~t~~W~~~~~~~~~~~~R~~~~~~~~~gkiyviGG~~g~~--- 341 (470)
T PLN02193 267 TPRS-FHSMAADEENVYVFGGVSAT-ARLKTLDSYNIVDKKWFHCSTPGDSFSIRGGAGLEVVQGKVWVVYGFNGCE--- 341 (470)
T ss_pred CCcc-ceEEEEECCEEEEECCCCCC-CCcceEEEEECCCCEEEeCCCCCCCCCCCCCcEEEEECCcEEEEECCCCCc---
Confidence 2222 23356789999999876432 123468999999999998865432211123345677899999998764321
Q ss_pred cEEEEEeccCCCCCceEEEEEeccCCC-ceeeEEEEecCCcEEEEEeeC---------------CeEEEEeCCCCeEEEe
Q 017748 274 PWDLWVMKEYGVNDSWTKLATLLNVGG-GNVKPLVYSRSEDKVLLHAVR---------------GDLCWYDLERHRVRSI 337 (366)
Q Consensus 274 ~l~iW~l~~~~~~~~W~~~~~i~~~~~-~~~~~~~~~~~g~~i~~~~~~---------------~~~~~yd~~t~~~~~v 337 (366)
.-++|+++-. ..+|+++..+...+. ...... +..++ .|++.... ..+++||++|++|+++
T Consensus 342 ~~dv~~yD~~--t~~W~~~~~~g~~P~~R~~~~~-~~~~~-~iyv~GG~~~~~~~~~~~~~~~~ndv~~~D~~t~~W~~~ 417 (470)
T PLN02193 342 VDDVHYYDPV--QDKWTQVETFGVRPSERSVFAS-AAVGK-HIVIFGGEIAMDPLAHVGPGQLTDGTFALDTETLQWERL 417 (470)
T ss_pred cCceEEEECC--CCEEEEeccCCCCCCCcceeEE-EEECC-EEEEECCccCCccccccCccceeccEEEEEcCcCEEEEc
Confidence 3457777763 467999876532211 112222 22334 67766431 1389999999999998
|
|
| >PRK14131 N-acetylneuraminic acid mutarotase; Provisional | Back alignment and domain information |
|---|
Probab=99.18 E-value=1e-08 Score=94.92 Aligned_cols=224 Identities=17% Similarity=0.135 Sum_probs=129.2
Q ss_pred EeeeceeEEeec--CCccEEEEEecc--ccceeecCCcCCCCCCCCcceEEEeeecCCCCeEEEEEEEEcC--C----CC
Q 017748 103 IGSCNGLLALED--SRRNIMLLLNPL--TKRHRVLPTFYRDLSRCVPSLEGFGFDVGSGDFKLVKILAFGK--P----MN 172 (366)
Q Consensus 103 ~~s~~Gll~~~~--~~~~~~~V~NP~--t~~~~~LP~~~~~~~~~~~~~~~lg~d~~~~~ykvv~~~~~~~--~----~~ 172 (366)
.+..++-|.+.. ....++ ++++. +++|..+|+++..... ....+.++ + +|..+.-... + ..
T Consensus 34 ~~~~~~~iyv~gG~~~~~~~-~~d~~~~~~~W~~l~~~p~~~r~-~~~~v~~~-----~--~IYV~GG~~~~~~~~~~~~ 104 (376)
T PRK14131 34 GAIDNNTVYVGLGSAGTSWY-KLDLNAPSKGWTKIAAFPGGPRE-QAVAAFID-----G--KLYVFGGIGKTNSEGSPQV 104 (376)
T ss_pred EEEECCEEEEEeCCCCCeEE-EEECCCCCCCeEECCcCCCCCcc-cceEEEEC-----C--EEEEEcCCCCCCCCCceeE
Confidence 344455554322 234566 77765 5789999987632211 11222221 2 2333321111 0 11
Q ss_pred ccEEEEEEecCCcEEEccCC-CcceecCCcceE-ECCcEEEEEeeCCCC-------------------------------
Q 017748 173 YTEVAVFSLRVNSWRRIQDF-PYFWVTGTCSVF-VNGALHWTAALNQDA------------------------------- 219 (366)
Q Consensus 173 ~~~~~vyss~t~~W~~~~~~-~~~~~~~~~~v~-~~G~lYw~~~~~~~~------------------------------- 219 (366)
...++.|+..+++|+.++.+ |..... ..++. .+|+||.+++.....
T Consensus 105 ~~~v~~YD~~~n~W~~~~~~~p~~~~~-~~~~~~~~~~IYv~GG~~~~~~~~~~~d~~~~~~~~~~~~~i~~~~~~~~~~ 183 (376)
T PRK14131 105 FDDVYKYDPKTNSWQKLDTRSPVGLAG-HVAVSLHNGKAYITGGVNKNIFDGYFEDLAAAGKDKTPKDKINDAYFDKKPE 183 (376)
T ss_pred cccEEEEeCCCCEEEeCCCCCCCcccc-eEEEEeeCCEEEEECCCCHHHHHHHHhhhhhcccchhhhhhhHHHHhcCChh
Confidence 35789999999999998742 332211 22344 799999998754210
Q ss_pred --CCCcEEEEEECCCceeeee-CCCCccCCCCceEEEEEECCeEEEEEeecCCCCCCcEEEEEeccCCCCCceEEEEEec
Q 017748 220 --DRNDIIIAFDLKSEEFYQV-PLPPIVGIEGYYILLEALGGCLCLLCKFDDDDDDRPWDLWVMKEYGVNDSWTKLATLL 296 (366)
Q Consensus 220 --~~~~~i~~fD~~~~~~~~i-~lP~~~~~~~~~~~l~~~~g~L~l~~~~~~~~~~~~l~iW~l~~~~~~~~W~~~~~i~ 296 (366)
.....+.+||+.+++|+.+ ++|.... ....++..+++||++++.... ..+...+|.++-.....+|+++..++
T Consensus 184 ~~~~~~~v~~YD~~t~~W~~~~~~p~~~~---~~~a~v~~~~~iYv~GG~~~~-~~~~~~~~~~~~~~~~~~W~~~~~~p 259 (376)
T PRK14131 184 DYFFNKEVLSYDPSTNQWKNAGESPFLGT---AGSAVVIKGNKLWLINGEIKP-GLRTDAVKQGKFTGNNLKWQKLPDLP 259 (376)
T ss_pred hcCcCceEEEEECCCCeeeECCcCCCCCC---CcceEEEECCEEEEEeeeECC-CcCChhheEEEecCCCcceeecCCCC
Confidence 0124699999999999988 5665321 234567789999999986432 22355666654322346799988776
Q ss_pred cCCCc-----eeeEEEEecCCcEEEEEeeCC-----------------------eEEEEeCCCCeEEEeeeec
Q 017748 297 NVGGG-----NVKPLVYSRSEDKVLLHAVRG-----------------------DLCWYDLERHRVRSIVEID 341 (366)
Q Consensus 297 ~~~~~-----~~~~~~~~~~g~~i~~~~~~~-----------------------~~~~yd~~t~~~~~v~~~~ 341 (366)
....+ .....++..++ +|++..... .+-+||+++++|+.+..++
T Consensus 260 ~~~~~~~~~~~~~~~a~~~~~-~iyv~GG~~~~~~~~~~~~~~~~~~~~~~~~~~~e~yd~~~~~W~~~~~lp 331 (376)
T PRK14131 260 PAPGGSSQEGVAGAFAGYSNG-VLLVAGGANFPGARENYQNGKLYAHEGLKKSWSDEIYALVNGKWQKVGELP 331 (376)
T ss_pred CCCcCCcCCccceEeceeECC-EEEEeeccCCCCChhhhhcCCcccccCCcceeehheEEecCCcccccCcCC
Confidence 53210 01111223344 777765321 2457999999999884443
|
|
| >TIGR03548 mutarot_permut cyclically-permuted mutatrotase family protein | Back alignment and domain information |
|---|
Probab=99.18 E-value=6.7e-09 Score=94.21 Aligned_cols=200 Identities=12% Similarity=0.123 Sum_probs=122.5
Q ss_pred cEEEEE-ecccc-ceeecCCcCCCCCCCCcceEEEeeecCCCCeEEEEEEEEcCCCCccEEEEEEecCCcE----EEccC
Q 017748 118 NIMLLL-NPLTK-RHRVLPTFYRDLSRCVPSLEGFGFDVGSGDFKLVKILAFGKPMNYTEVAVFSLRVNSW----RRIQD 191 (366)
Q Consensus 118 ~~~~V~-NP~t~-~~~~LP~~~~~~~~~~~~~~~lg~d~~~~~ykvv~~~~~~~~~~~~~~~vyss~t~~W----~~~~~ 191 (366)
.++ ++ +|..+ +|..+++++.++.. ...+ ..+ + +|+.+.-.........++.|+..++.| +.++.
T Consensus 40 ~v~-~~~~~~~~~~W~~~~~lp~~r~~--~~~~--~~~---~--~lyviGG~~~~~~~~~v~~~d~~~~~w~~~~~~~~~ 109 (323)
T TIGR03548 40 GIY-IAKDENSNLKWVKDGQLPYEAAY--GASV--SVE---N--GIYYIGGSNSSERFSSVYRITLDESKEELICETIGN 109 (323)
T ss_pred eeE-EEecCCCceeEEEcccCCccccc--eEEE--EEC---C--EEEEEcCCCCCCCceeEEEEEEcCCceeeeeeEcCC
Confidence 355 55 45433 78888877765432 1121 221 1 344443222223356789999999887 67777
Q ss_pred CCcceecCCcceEECCcEEEEEeeCCCCCCCcEEEEEECCCceeeee-CCCCccCCCCceEEEEEECCeEEEEEeecCCC
Q 017748 192 FPYFWVTGTCSVFVNGALHWTAALNQDADRNDIIIAFDLKSEEFYQV-PLPPIVGIEGYYILLEALGGCLCLLCKFDDDD 270 (366)
Q Consensus 192 ~~~~~~~~~~~v~~~G~lYw~~~~~~~~~~~~~i~~fD~~~~~~~~i-~lP~~~~~~~~~~~l~~~~g~L~l~~~~~~~~ 270 (366)
+|..... ..++.++|++|.+++.... .....+.+||+++++|+.+ ++|...+ ....++..+++||++++.....
T Consensus 110 lp~~~~~-~~~~~~~~~iYv~GG~~~~-~~~~~v~~yd~~~~~W~~~~~~p~~~r---~~~~~~~~~~~iYv~GG~~~~~ 184 (323)
T TIGR03548 110 LPFTFEN-GSACYKDGTLYVGGGNRNG-KPSNKSYLFNLETQEWFELPDFPGEPR---VQPVCVKLQNELYVFGGGSNIA 184 (323)
T ss_pred CCcCccC-ceEEEECCEEEEEeCcCCC-ccCceEEEEcCCCCCeeECCCCCCCCC---CcceEEEECCEEEEEcCCCCcc
Confidence 7755432 3367789999999875322 1235799999999999998 4775331 2345577899999999865321
Q ss_pred CCCcEEEEEeccCCCCCceEEEEEeccCCCc--eeeEEEEecCCcEEEEEeeC---------------------------
Q 017748 271 DDRPWDLWVMKEYGVNDSWTKLATLLNVGGG--NVKPLVYSRSEDKVLLHAVR--------------------------- 321 (366)
Q Consensus 271 ~~~~l~iW~l~~~~~~~~W~~~~~i~~~~~~--~~~~~~~~~~g~~i~~~~~~--------------------------- 321 (366)
..+++..+- ..++|+++..++..... ...-.++...++.|++....
T Consensus 185 ---~~~~~~yd~--~~~~W~~~~~~~~~~~p~~~~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 259 (323)
T TIGR03548 185 ---YTDGYKYSP--KKNQWQKVADPTTDSEPISLLGAASIKINESLLLCIGGFNKDVYNDAVIDLATMKDESLKGYKKEY 259 (323)
T ss_pred ---ccceEEEec--CCCeeEECCCCCCCCCceeccceeEEEECCCEEEEECCcCHHHHHHHHhhhhhccchhhhhhHHHH
Confidence 345666665 34679987665321110 01112222223367766431
Q ss_pred -----------CeEEEEeCCCCeEEEe
Q 017748 322 -----------GDLCWYDLERHRVRSI 337 (366)
Q Consensus 322 -----------~~~~~yd~~t~~~~~v 337 (366)
..+..||+++++|+.+
T Consensus 260 ~~~~~~~~~~~~~v~~yd~~~~~W~~~ 286 (323)
T TIGR03548 260 FLKPPEWYNWNRKILIYNVRTGKWKSI 286 (323)
T ss_pred hCCCccccCcCceEEEEECCCCeeeEc
Confidence 2499999999999998
|
Members of this protein family show essentially full-length homology, cyclically permuted, to YjhT from Escherichia coli. YjhT was shown to act as a mutarotase for sialic acid, and by this ability to be able to act as a virulence factor. Members of the YjhT family (TIGR03547) and this cyclically-permuted family have multiple repeats of the beta-propeller-forming Kelch repeat. |
| >PHA02790 Kelch-like protein; Provisional | Back alignment and domain information |
|---|
Probab=99.11 E-value=5.1e-09 Score=99.81 Aligned_cols=148 Identities=10% Similarity=0.062 Sum_probs=105.2
Q ss_pred CccEEEEEEecCCcEEEccCCCcceecCCcceEECCcEEEEEeeCCCCCCCcEEEEEECCCceeeee-CCCCccCCCCce
Q 017748 172 NYTEVAVFSLRVNSWRRIQDFPYFWVTGTCSVFVNGALHWTAALNQDADRNDIIIAFDLKSEEFYQV-PLPPIVGIEGYY 250 (366)
Q Consensus 172 ~~~~~~vyss~t~~W~~~~~~~~~~~~~~~~v~~~G~lYw~~~~~~~~~~~~~i~~fD~~~~~~~~i-~lP~~~~~~~~~ 250 (366)
....++.|++.+++|..++.|+..... ...+.++|.+|.+++.... ..+..||+.+++|..+ ++|... ..
T Consensus 285 ~~~~v~~Ydp~~~~W~~~~~m~~~r~~-~~~v~~~~~iYviGG~~~~----~sve~ydp~~n~W~~~~~l~~~r----~~ 355 (480)
T PHA02790 285 IHNNAIAVNYISNNWIPIPPMNSPRLY-ASGVPANNKLYVVGGLPNP----TSVERWFHGDAAWVNMPSLLKPR----CN 355 (480)
T ss_pred cCCeEEEEECCCCEEEECCCCCchhhc-ceEEEECCEEEEECCcCCC----CceEEEECCCCeEEECCCCCCCC----cc
Confidence 345788999999999999988765433 3367899999999986421 3689999999999888 777654 34
Q ss_pred EEEEEECCeEEEEEeecCCCCCCcEEEEEeccCCCCCceEEEEEeccCCCceeeEEEEecCCcEEEEEeeCCeEEEEeCC
Q 017748 251 ILLEALGGCLCLLCKFDDDDDDRPWDLWVMKEYGVNDSWTKLATLLNVGGGNVKPLVYSRSEDKVLLHAVRGDLCWYDLE 330 (366)
Q Consensus 251 ~~l~~~~g~L~l~~~~~~~~~~~~l~iW~l~~~~~~~~W~~~~~i~~~~~~~~~~~~~~~~g~~i~~~~~~~~~~~yd~~ 330 (366)
...++++|+||++++.... ...+..+ +. ..++|+.+..++.... ...++..+| +|++... .+..||++
T Consensus 356 ~~~~~~~g~IYviGG~~~~--~~~ve~y--dp--~~~~W~~~~~m~~~r~---~~~~~~~~~-~IYv~GG--~~e~ydp~ 423 (480)
T PHA02790 356 PAVASINNVIYVIGGHSET--DTTTEYL--LP--NHDQWQFGPSTYYPHY---KSCALVFGR-RLFLVGR--NAEFYCES 423 (480)
T ss_pred cEEEEECCEEEEecCcCCC--CccEEEE--eC--CCCEEEeCCCCCCccc---cceEEEECC-EEEEECC--ceEEecCC
Confidence 5678899999999886542 1234443 22 2467999766665432 223333344 8888763 47889999
Q ss_pred CCeEEEeeee
Q 017748 331 RHRVRSIVEI 340 (366)
Q Consensus 331 t~~~~~v~~~ 340 (366)
+++|+.+..+
T Consensus 424 ~~~W~~~~~m 433 (480)
T PHA02790 424 SNTWTLIDDP 433 (480)
T ss_pred CCcEeEcCCC
Confidence 9999998444
|
|
| >PHA03098 kelch-like protein; Provisional | Back alignment and domain information |
|---|
Probab=99.10 E-value=7.8e-09 Score=100.41 Aligned_cols=193 Identities=8% Similarity=0.055 Sum_probs=122.7
Q ss_pred EEeccccceeecCCcCCCCCCCCcceEEEeeecCCCCeEEEEEEEEcC-CCCccEEEEEEecCCcEEEccCCCcceecCC
Q 017748 122 LLNPLTKRHRVLPTFYRDLSRCVPSLEGFGFDVGSGDFKLVKILAFGK-PMNYTEVAVFSLRVNSWRRIQDFPYFWVTGT 200 (366)
Q Consensus 122 V~NP~t~~~~~LP~~~~~~~~~~~~~~~lg~d~~~~~ykvv~~~~~~~-~~~~~~~~vyss~t~~W~~~~~~~~~~~~~~ 200 (366)
-+|+.+++|..++..+... .+..+ .. ++ +++.++.... ......+..|+..+++|..++.++..... .
T Consensus 268 ~~~~~~~~~~~~~~~~~~~---~~~~~--~~----~~-~lyv~GG~~~~~~~~~~v~~yd~~~~~W~~~~~~~~~R~~-~ 336 (534)
T PHA03098 268 TNYSPLSEINTIIDIHYVY---CFGSV--VL----NN-VIYFIGGMNKNNLSVNSVVSYDTKTKSWNKVPELIYPRKN-P 336 (534)
T ss_pred ecchhhhhcccccCccccc---cceEE--EE----CC-EEEEECCCcCCCCeeccEEEEeCCCCeeeECCCCCccccc-c
Confidence 5688899998887654321 11111 11 11 3333322111 12234789999999999999888754433 3
Q ss_pred cceEECCcEEEEEeeCCCCCCCcEEEEEECCCceeeee-CCCCccCCCCceEEEEEECCeEEEEEeecCCCCCCcEEEEE
Q 017748 201 CSVFVNGALHWTAALNQDADRNDIIIAFDLKSEEFYQV-PLPPIVGIEGYYILLEALGGCLCLLCKFDDDDDDRPWDLWV 279 (366)
Q Consensus 201 ~~v~~~G~lYw~~~~~~~~~~~~~i~~fD~~~~~~~~i-~lP~~~~~~~~~~~l~~~~g~L~l~~~~~~~~~~~~l~iW~ 279 (366)
..+.++|.+|.+++.... .....+.+||+.+++|+.+ ++|... .....+..+|++|++++....+ ...-.++.
T Consensus 337 ~~~~~~~~lyv~GG~~~~-~~~~~v~~yd~~~~~W~~~~~lp~~r----~~~~~~~~~~~iYv~GG~~~~~-~~~~~v~~ 410 (534)
T PHA03098 337 GVTVFNNRIYVIGGIYNS-ISLNTVESWKPGESKWREEPPLIFPR----YNPCVVNVNNLIYVIGGISKND-ELLKTVEC 410 (534)
T ss_pred eEEEECCEEEEEeCCCCC-EecceEEEEcCCCCceeeCCCcCcCC----ccceEEEECCEEEEECCcCCCC-cccceEEE
Confidence 467899999999986522 2234789999999999988 676654 3345577899999998854321 11224555
Q ss_pred eccCCCCCceEEEEEeccCCCceeeEEEEecCCcEEEEEeeC---------CeEEEEeCCCCeEEEe
Q 017748 280 MKEYGVNDSWTKLATLLNVGGGNVKPLVYSRSEDKVLLHAVR---------GDLCWYDLERHRVRSI 337 (366)
Q Consensus 280 l~~~~~~~~W~~~~~i~~~~~~~~~~~~~~~~g~~i~~~~~~---------~~~~~yd~~t~~~~~v 337 (366)
++- ..++|.++..++.... .. .++..++ .|++.... ..+..||+++++|+.+
T Consensus 411 yd~--~t~~W~~~~~~p~~r~--~~-~~~~~~~-~iyv~GG~~~~~~~~~~~~v~~yd~~~~~W~~~ 471 (534)
T PHA03098 411 FSL--NTNKWSKGSPLPISHY--GG-CAIYHDG-KIYVIGGISYIDNIKVYNIVESYNPVTNKWTEL 471 (534)
T ss_pred EeC--CCCeeeecCCCCcccc--Cc-eEEEECC-EEEEECCccCCCCCcccceEEEecCCCCceeeC
Confidence 554 2467999876664432 22 2233334 77776531 1399999999999998
|
|
| >PF12937 F-box-like: F-box-like; PDB: 1P22_A 2OVP_B 2OVR_B 2OVQ_B 1FS1_A 1FS2_C 1FQV_I 1LDK_E 2AST_B 2ASS_B | Back alignment and domain information |
|---|
Probab=99.00 E-value=1.4e-10 Score=72.76 Aligned_cols=43 Identities=26% Similarity=0.471 Sum_probs=37.3
Q ss_pred CCCCcHHHHHHHHccCCcccceeeeccchhhhhhcCChhHHHH
Q 017748 4 SVQLPLDLIVDILIRLPVRSLARFRCVSRSFRSLIDGQDFVNR 46 (366)
Q Consensus 4 ~~~LP~dll~~IL~rLP~~~l~r~r~VcK~W~~li~s~~F~~~ 46 (366)
+..||+|++.+||+.||++++.+++.|||+|+.++.++.+.+.
T Consensus 1 i~~LP~Eil~~If~~L~~~dl~~~~~vcr~w~~~~~~~~lW~~ 43 (47)
T PF12937_consen 1 ISSLPDEILLEIFSYLDPRDLLRLSLVCRRWRRIANDNSLWRR 43 (47)
T ss_dssp CCCS-HHHHHHHHTTS-HHHHHHHTTSSHHHHHHHTCCCHHHH
T ss_pred ChHhHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHCChhhhhh
Confidence 5789999999999999999999999999999999998866544
|
|
| >PLN02153 epithiospecifier protein | Back alignment and domain information |
|---|
Probab=98.98 E-value=8.1e-08 Score=87.79 Aligned_cols=157 Identities=10% Similarity=0.101 Sum_probs=98.3
Q ss_pred cEEEEEEecCCcEEEccCCCc-ce--ecCCcceEECCcEEEEEeeCCCCCCCcEEEEEECCCceeeee-CC-----CCcc
Q 017748 174 TEVAVFSLRVNSWRRIQDFPY-FW--VTGTCSVFVNGALHWTAALNQDADRNDIIIAFDLKSEEFYQV-PL-----PPIV 244 (366)
Q Consensus 174 ~~~~vyss~t~~W~~~~~~~~-~~--~~~~~~v~~~G~lYw~~~~~~~~~~~~~i~~fD~~~~~~~~i-~l-----P~~~ 244 (366)
..+++|+..+++|+.++.++. .. ......+.++|+||.+++..... ....+.+||+++++|..+ ++ |...
T Consensus 50 ~~~~~yd~~~~~W~~~~~~~~~p~~~~~~~~~~~~~~~iyv~GG~~~~~-~~~~v~~yd~~t~~W~~~~~~~~~~~p~~R 128 (341)
T PLN02153 50 KDLYVFDFNTHTWSIAPANGDVPRISCLGVRMVAVGTKLYIFGGRDEKR-EFSDFYSYDTVKNEWTFLTKLDEEGGPEAR 128 (341)
T ss_pred CcEEEEECCCCEEEEcCccCCCCCCccCceEEEEECCEEEEECCCCCCC-ccCcEEEEECCCCEEEEeccCCCCCCCCCc
Confidence 479999999999998765432 11 11233678899999998764322 224689999999999987 34 3322
Q ss_pred CCCCceEEEEEECCeEEEEEeecCCC---CCCc-EEEEEeccCCCCCceEEEEEeccCCC-ceeeEEEEecCCcEEEEEe
Q 017748 245 GIEGYYILLEALGGCLCLLCKFDDDD---DDRP-WDLWVMKEYGVNDSWTKLATLLNVGG-GNVKPLVYSRSEDKVLLHA 319 (366)
Q Consensus 245 ~~~~~~~~l~~~~g~L~l~~~~~~~~---~~~~-l~iW~l~~~~~~~~W~~~~~i~~~~~-~~~~~~~~~~~g~~i~~~~ 319 (366)
.....++.+++||++++..... .... -+++.++- ..++|.++..+..... ......++ .++ +|++..
T Consensus 129 ----~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~v~~yd~--~~~~W~~l~~~~~~~~~r~~~~~~~-~~~-~iyv~G 200 (341)
T PLN02153 129 ----TFHSMASDENHVYVFGGVSKGGLMKTPERFRTIEAYNI--ADGKWVQLPDPGENFEKRGGAGFAV-VQG-KIWVVY 200 (341)
T ss_pred ----eeeEEEEECCEEEEECCccCCCccCCCcccceEEEEEC--CCCeEeeCCCCCCCCCCCCcceEEE-ECC-eEEEEe
Confidence 3445677899999998865321 0101 24666665 3467998655431111 11112222 234 666642
Q ss_pred e--------------CCeEEEEeCCCCeEEEeeee
Q 017748 320 V--------------RGDLCWYDLERHRVRSIVEI 340 (366)
Q Consensus 320 ~--------------~~~~~~yd~~t~~~~~v~~~ 340 (366)
. ...+.+||+++++|+++ ..
T Consensus 201 G~~~~~~~gG~~~~~~~~v~~yd~~~~~W~~~-~~ 234 (341)
T PLN02153 201 GFATSILPGGKSDYESNAVQFFDPASGKWTEV-ET 234 (341)
T ss_pred ccccccccCCccceecCceEEEEcCCCcEEec-cc
Confidence 1 12499999999999998 54
|
|
| >PLN02193 nitrile-specifier protein | Back alignment and domain information |
|---|
Probab=98.93 E-value=1.7e-07 Score=89.12 Aligned_cols=198 Identities=14% Similarity=0.109 Sum_probs=115.8
Q ss_pred EEEEEeccc----cceeecCCc---CCCCCCCCcceEEEeeecCCCCeEEEEEEEEcC-CC-CccEEEEEEecCCcEEEc
Q 017748 119 IMLLLNPLT----KRHRVLPTF---YRDLSRCVPSLEGFGFDVGSGDFKLVKILAFGK-PM-NYTEVAVFSLRVNSWRRI 189 (366)
Q Consensus 119 ~~~V~NP~t----~~~~~LP~~---~~~~~~~~~~~~~lg~d~~~~~ykvv~~~~~~~-~~-~~~~~~vyss~t~~W~~~ 189 (366)
.+ +++|.+ .+|..+++. |.++.. ..++.++ . +|+.+.-... .. ....+++|+..+++|+.+
T Consensus 139 ~y-~~~~~~~~~~~~W~~~~~~~~~P~pR~~--h~~~~~~------~-~iyv~GG~~~~~~~~~~~v~~yD~~~~~W~~~ 208 (470)
T PLN02193 139 AY-ISLPSTPKLLGKWIKVEQKGEGPGLRCS--HGIAQVG------N-KIYSFGGEFTPNQPIDKHLYVFDLETRTWSIS 208 (470)
T ss_pred EE-EecCCChhhhceEEEcccCCCCCCCccc--cEEEEEC------C-EEEEECCcCCCCCCeeCcEEEEECCCCEEEeC
Confidence 56 778766 789988764 222221 1222111 2 3333322111 11 224699999999999987
Q ss_pred cCC---CcceecCCcceEECCcEEEEEeeCCCCCCCcEEEEEECCCceeeee-CC---CCccCCCCceEEEEEECCeEEE
Q 017748 190 QDF---PYFWVTGTCSVFVNGALHWTAALNQDADRNDIIIAFDLKSEEFYQV-PL---PPIVGIEGYYILLEALGGCLCL 262 (366)
Q Consensus 190 ~~~---~~~~~~~~~~v~~~G~lYw~~~~~~~~~~~~~i~~fD~~~~~~~~i-~l---P~~~~~~~~~~~l~~~~g~L~l 262 (366)
+.+ |.........+.+++.+|.+++.... .....+.+||+.+++|+.+ ++ |... ....++..+++||+
T Consensus 209 ~~~g~~P~~~~~~~~~v~~~~~lYvfGG~~~~-~~~ndv~~yD~~t~~W~~l~~~~~~P~~R----~~h~~~~~~~~iYv 283 (470)
T PLN02193 209 PATGDVPHLSCLGVRMVSIGSTLYVFGGRDAS-RQYNGFYSFDTTTNEWKLLTPVEEGPTPR----SFHSMAADEENVYV 283 (470)
T ss_pred CCCCCCCCCcccceEEEEECCEEEEECCCCCC-CCCccEEEEECCCCEEEEcCcCCCCCCCc----cceEEEEECCEEEE
Confidence 532 22111123357799999999875432 1234799999999999987 44 3322 33456678999999
Q ss_pred EEeecCCCCCCcEEEEEeccCCCCCceEEEEEeccCCC-ceeeEEEEecCCcEEEEEee-C----CeEEEEeCCCCeEEE
Q 017748 263 LCKFDDDDDDRPWDLWVMKEYGVNDSWTKLATLLNVGG-GNVKPLVYSRSEDKVLLHAV-R----GDLCWYDLERHRVRS 336 (366)
Q Consensus 263 ~~~~~~~~~~~~l~iW~l~~~~~~~~W~~~~~i~~~~~-~~~~~~~~~~~g~~i~~~~~-~----~~~~~yd~~t~~~~~ 336 (366)
+........ .-+++.++- ...+|+.+........ +.....++. ++ +|++... + ..+..||+++++|++
T Consensus 284 ~GG~~~~~~--~~~~~~yd~--~t~~W~~~~~~~~~~~~R~~~~~~~~-~g-kiyviGG~~g~~~~dv~~yD~~t~~W~~ 357 (470)
T PLN02193 284 FGGVSATAR--LKTLDSYNI--VDKKWFHCSTPGDSFSIRGGAGLEVV-QG-KVWVVYGFNGCEVDDVHYYDPVQDKWTQ 357 (470)
T ss_pred ECCCCCCCC--cceEEEEEC--CCCEEEeCCCCCCCCCCCCCcEEEEE-CC-cEEEEECCCCCccCceEEEECCCCEEEE
Confidence 988754211 234566554 2467998654211111 112222332 34 6666543 1 349999999999999
Q ss_pred e
Q 017748 337 I 337 (366)
Q Consensus 337 v 337 (366)
+
T Consensus 358 ~ 358 (470)
T PLN02193 358 V 358 (470)
T ss_pred e
Confidence 8
|
|
| >PF00646 F-box: F-box domain; InterPro: IPR001810 The F-box domain was first described as a sequence motif found in cyclin-F that interacts with the protein SKP1 [, ] | Back alignment and domain information |
|---|
Probab=98.88 E-value=3.1e-10 Score=71.65 Aligned_cols=46 Identities=28% Similarity=0.490 Sum_probs=38.9
Q ss_pred CCCCCcHHHHHHHHccCCcccceeeeccchhhhhhcCChhHHHHHH
Q 017748 3 TSVQLPLDLIVDILIRLPVRSLARFRCVSRSFRSLIDGQDFVNRYV 48 (366)
Q Consensus 3 ~~~~LP~dll~~IL~rLP~~~l~r~r~VcK~W~~li~s~~F~~~~~ 48 (366)
++..||+|++.+||.+|+.+++.+++.|||+|++++.++.+...+.
T Consensus 2 ~~~~LP~~il~~Il~~l~~~~~~~l~~vsk~~~~~~~~~~~~~~~~ 47 (48)
T PF00646_consen 2 PLSDLPDEILQEILSYLDPKDLLRLSLVSKRWRSLVDSPRLWKKII 47 (48)
T ss_dssp HHHHS-HHHHHHHHHTS-HHHHHHHCTT-HHHHHHHTTHHHHHHHH
T ss_pred CHHHCCHHHHHHHHHHCcHHHHHHHHHHhhHHHHHHcCCCccHHHh
Confidence 4567999999999999999999999999999999999998876653
|
This relatively conserved structural motif is present in numerous proteins and serves as a link between a target protein and a ubiquitin-conjugating enzyme. The SCF complex (e.g., Skp1-Cullin-F-box) plays a similar role as an E3 ligase in the ubiquitin protein degradation pathway [, ]. Different F-box proteins as a part of SCF complex recruit particular substrates for ubiquitination through specific protein-protein interaction domains. Many mammalian F-box domains contain leucine-rich or WD-40 repeats (IPR001680 from INTERPRO). However, several F-box proteins either have other previously described domains such as Sec7 domain found in FBS protein or do not contain defined protein-protein interaction domains or motifs.; GO: 0005515 protein binding; PDB: 2E32_A 2E31_A 3V7D_B 1NEX_B 3MKS_D 3L2O_B. |
| >TIGR03548 mutarot_permut cyclically-permuted mutatrotase family protein | Back alignment and domain information |
|---|
Probab=98.79 E-value=1.6e-06 Score=78.64 Aligned_cols=139 Identities=12% Similarity=-0.004 Sum_probs=86.1
Q ss_pred ccEEEEEeccccce----eecCCcCCCCCCCCcceEEEeeecCCCCeEEEEEEEEcCCCCccEEEEEEecCCcEEEccCC
Q 017748 117 RNIMLLLNPLTKRH----RVLPTFYRDLSRCVPSLEGFGFDVGSGDFKLVKILAFGKPMNYTEVAVFSLRVNSWRRIQDF 192 (366)
Q Consensus 117 ~~~~~V~NP~t~~~----~~LP~~~~~~~~~~~~~~~lg~d~~~~~ykvv~~~~~~~~~~~~~~~vyss~t~~W~~~~~~ 192 (366)
..+. .+|+.+++| ..+|++|..+.. ..++ .++ + +|..+.-.........+++|+..+++|+.++.+
T Consensus 88 ~~v~-~~d~~~~~w~~~~~~~~~lp~~~~~--~~~~--~~~---~--~iYv~GG~~~~~~~~~v~~yd~~~~~W~~~~~~ 157 (323)
T TIGR03548 88 SSVY-RITLDESKEELICETIGNLPFTFEN--GSAC--YKD---G--TLYVGGGNRNGKPSNKSYLFNLETQEWFELPDF 157 (323)
T ss_pred eeEE-EEEEcCCceeeeeeEcCCCCcCccC--ceEE--EEC---C--EEEEEeCcCCCccCceEEEEcCCCCCeeECCCC
Confidence 3566 889999987 678877655432 1221 222 1 344443222223356799999999999999877
Q ss_pred CcceecCCcceEECCcEEEEEeeCCCCCCCcEEEEEECCCceeeee-CCCCcc--CCCCceEEEEEECCeEEEEEeec
Q 017748 193 PYFWVTGTCSVFVNGALHWTAALNQDADRNDIIIAFDLKSEEFYQV-PLPPIV--GIEGYYILLEALGGCLCLLCKFD 267 (366)
Q Consensus 193 ~~~~~~~~~~v~~~G~lYw~~~~~~~~~~~~~i~~fD~~~~~~~~i-~lP~~~--~~~~~~~~l~~~~g~L~l~~~~~ 267 (366)
|.........+.++|.+|.+++..... ...+.+||+++++|+.+ +++... ........++..+++|++++..+
T Consensus 158 p~~~r~~~~~~~~~~~iYv~GG~~~~~--~~~~~~yd~~~~~W~~~~~~~~~~~p~~~~~~~~~~~~~~~iyv~GG~~ 233 (323)
T TIGR03548 158 PGEPRVQPVCVKLQNELYVFGGGSNIA--YTDGYKYSPKKNQWQKVADPTTDSEPISLLGAASIKINESLLLCIGGFN 233 (323)
T ss_pred CCCCCCcceEEEECCEEEEEcCCCCcc--ccceEEEecCCCeeEECCCCCCCCCceeccceeEEEECCCEEEEECCcC
Confidence 642222233467999999998764221 12478999999999988 333211 00012333455579999998865
|
Members of this protein family show essentially full-length homology, cyclically permuted, to YjhT from Escherichia coli. YjhT was shown to act as a mutarotase for sialic acid, and by this ability to be able to act as a virulence factor. Members of the YjhT family (TIGR03547) and this cyclically-permuted family have multiple repeats of the beta-propeller-forming Kelch repeat. |
| >PRK14131 N-acetylneuraminic acid mutarotase; Provisional | Back alignment and domain information |
|---|
Probab=98.76 E-value=3.8e-06 Score=77.80 Aligned_cols=160 Identities=19% Similarity=0.234 Sum_probs=97.0
Q ss_pred cEEEEEEecCCcEEEccCCCcceecCCcceEECCcEEEEEeeCCCCCCC--cEEEEEECCCceeeee-CCCCccC---CC
Q 017748 174 TEVAVFSLRVNSWRRIQDFPYFWVTGTCSVFVNGALHWTAALNQDADRN--DIIIAFDLKSEEFYQV-PLPPIVG---IE 247 (366)
Q Consensus 174 ~~~~vyss~t~~W~~~~~~~~~~~~~~~~v~~~G~lYw~~~~~~~~~~~--~~i~~fD~~~~~~~~i-~lP~~~~---~~ 247 (366)
..+++|+..++.|+.++.+|.........+.++|+||.+++........ .....||+++++|..+ ++|.... ..
T Consensus 189 ~~v~~YD~~t~~W~~~~~~p~~~~~~~a~v~~~~~iYv~GG~~~~~~~~~~~~~~~~~~~~~~W~~~~~~p~~~~~~~~~ 268 (376)
T PRK14131 189 KEVLSYDPSTNQWKNAGESPFLGTAGSAVVIKGNKLWLINGEIKPGLRTDAVKQGKFTGNNLKWQKLPDLPPAPGGSSQE 268 (376)
T ss_pred ceEEEEECCCCeeeECCcCCCCCCCcceEEEECCEEEEEeeeECCCcCChhheEEEecCCCcceeecCCCCCCCcCCcCC
Confidence 4689999999999999877753223334577899999999864322111 2445678899999887 6665431 00
Q ss_pred C-ceEEEEEECCeEEEEEeecCCCCC-----Cc-------EEEEEeccCC-CCCceEEEEEeccCCCceeeEEEEecCCc
Q 017748 248 G-YYILLEALGGCLCLLCKFDDDDDD-----RP-------WDLWVMKEYG-VNDSWTKLATLLNVGGGNVKPLVYSRSED 313 (366)
Q Consensus 248 ~-~~~~l~~~~g~L~l~~~~~~~~~~-----~~-------l~iW~l~~~~-~~~~W~~~~~i~~~~~~~~~~~~~~~~g~ 313 (366)
. .....++++|+||++++....... .. -.+|..+-|. ..+.|+++..++.... .. .++..++
T Consensus 269 ~~~~~~a~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~~~~~~~~~~e~yd~~~~~W~~~~~lp~~r~--~~-~av~~~~- 344 (376)
T PRK14131 269 GVAGAFAGYSNGVLLVAGGANFPGARENYQNGKLYAHEGLKKSWSDEIYALVNGKWQKVGELPQGLA--YG-VSVSWNN- 344 (376)
T ss_pred ccceEeceeECCEEEEeeccCCCCChhhhhcCCcccccCCcceeehheEEecCCcccccCcCCCCcc--ce-EEEEeCC-
Confidence 1 122356789999999886531100 00 0123322221 2367998877765432 22 2333344
Q ss_pred EEEEEeeC-------CeEEEEeCCCCeEEEe
Q 017748 314 KVLLHAVR-------GDLCWYDLERHRVRSI 337 (366)
Q Consensus 314 ~i~~~~~~-------~~~~~yd~~t~~~~~v 337 (366)
.|++.... ..+..|+++++++...
T Consensus 345 ~iyv~GG~~~~~~~~~~v~~~~~~~~~~~~~ 375 (376)
T PRK14131 345 GVLLIGGETAGGKAVSDVTLLSWDGKKLTVE 375 (376)
T ss_pred EEEEEcCCCCCCcEeeeEEEEEEcCCEEEEe
Confidence 77777532 1488899998887643
|
|
| >smart00256 FBOX A Receptor for Ubiquitination Targets | Back alignment and domain information |
|---|
Probab=98.73 E-value=3.4e-09 Score=64.38 Aligned_cols=39 Identities=49% Similarity=0.777 Sum_probs=36.8
Q ss_pred CcHHHHHHHHccCCcccceeeeccchhhhhhcCChhHHH
Q 017748 7 LPLDLIVDILIRLPVRSLARFRCVSRSFRSLIDGQDFVN 45 (366)
Q Consensus 7 LP~dll~~IL~rLP~~~l~r~r~VcK~W~~li~s~~F~~ 45 (366)
||+|++.+||.+|+.+++.+++.|||+|+.++.++.|..
T Consensus 1 lP~~ll~~I~~~l~~~d~~~~~~vc~~~~~~~~~~~~~~ 39 (41)
T smart00256 1 LPDEILEEILSKLPPKDLLRLRKVSRRWRSLIDSHDFWF 39 (41)
T ss_pred CCHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcChhhhh
Confidence 799999999999999999999999999999999988754
|
|
| >TIGR03547 muta_rot_YjhT mutatrotase, YjhT family | Back alignment and domain information |
|---|
Probab=98.68 E-value=2.5e-06 Score=78.19 Aligned_cols=161 Identities=14% Similarity=0.146 Sum_probs=96.5
Q ss_pred cEEEEEEe--cCCcEEEccCCCcceecCCcceEECCcEEEEEeeCCCC-----CCCcEEEEEECCCceeeeeCCCCccCC
Q 017748 174 TEVAVFSL--RVNSWRRIQDFPYFWVTGTCSVFVNGALHWTAALNQDA-----DRNDIIIAFDLKSEEFYQVPLPPIVGI 246 (366)
Q Consensus 174 ~~~~vyss--~t~~W~~~~~~~~~~~~~~~~v~~~G~lYw~~~~~~~~-----~~~~~i~~fD~~~~~~~~i~lP~~~~~ 246 (366)
..+++|++ .+++|+.++.+|.........+.++|.||.+++..... .....+.+||+.+++|+.+..|....
T Consensus 29 ~~~~~~d~~~~~~~W~~l~~~p~~~R~~~~~~~~~~~iYv~GG~~~~~~~~~~~~~~~v~~Yd~~~~~W~~~~~~~p~~- 107 (346)
T TIGR03547 29 TSWYKLDLKKPSKGWQKIADFPGGPRNQAVAAAIDGKLYVFGGIGKANSEGSPQVFDDVYRYDPKKNSWQKLDTRSPVG- 107 (346)
T ss_pred CeeEEEECCCCCCCceECCCCCCCCcccceEEEECCEEEEEeCCCCCCCCCcceecccEEEEECCCCEEecCCCCCCCc-
Confidence 46788886 46889999988732222334678999999999864211 01347999999999999985322210
Q ss_pred CCceEEEEEECCeEEEEEeecCCCC-----------C---------------------CcEEEEEeccCCCCCceEEEEE
Q 017748 247 EGYYILLEALGGCLCLLCKFDDDDD-----------D---------------------RPWDLWVMKEYGVNDSWTKLAT 294 (366)
Q Consensus 247 ~~~~~~l~~~~g~L~l~~~~~~~~~-----------~---------------------~~l~iW~l~~~~~~~~W~~~~~ 294 (366)
......++..+|+||++++...... . ..-.+|..+- ..++|..+..
T Consensus 108 ~~~~~~~~~~~g~IYviGG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~YDp--~t~~W~~~~~ 185 (346)
T TIGR03547 108 LLGASGFSLHNGQAYFTGGVNKNIFDGYFADLSAADKDSEPKDKLIAAYFSQPPEDYFWNKNVLSYDP--STNQWRNLGE 185 (346)
T ss_pred ccceeEEEEeCCEEEEEcCcChHHHHHHHhhHhhcCccchhhhhhHHHHhCCChhHcCccceEEEEEC--CCCceeECcc
Confidence 1112223368999999988642100 0 0024666665 3467999887
Q ss_pred eccCCCceeeEEEEecCCcEEEEEeeC-------CeEEEE--eCCCCeEEEeeee
Q 017748 295 LLNVGGGNVKPLVYSRSEDKVLLHAVR-------GDLCWY--DLERHRVRSIVEI 340 (366)
Q Consensus 295 i~~~~~~~~~~~~~~~~g~~i~~~~~~-------~~~~~y--d~~t~~~~~v~~~ 340 (366)
++.... .....+..++ +|++.... ..+..| |+++++|..+-.+
T Consensus 186 ~p~~~r--~~~~~~~~~~-~iyv~GG~~~~~~~~~~~~~y~~~~~~~~W~~~~~m 237 (346)
T TIGR03547 186 NPFLGT--AGSAIVHKGN-KLLLINGEIKPGLRTAEVKQYLFTGGKLEWNKLPPL 237 (346)
T ss_pred CCCCcC--CCceEEEECC-EEEEEeeeeCCCccchheEEEEecCCCceeeecCCC
Confidence 764321 2222233344 77776431 124445 5577899887333
|
Members of this protein family contain multiple copies of the beta-propeller-forming Kelch repeat. All are full-length homologs to YjhT of Escherichia coli, which has been identified as a mutarotase for sialic acid. This protein improves bacterial ability to obtain host sialic acid, and thus serves as a virulence factor. Some bacteria carry what appears to be a cyclically permuted homolog of this protein. |
| >KOG1230 consensus Protein containing repeated kelch motifs [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.38 E-value=1.6e-05 Score=70.72 Aligned_cols=218 Identities=15% Similarity=0.172 Sum_probs=130.3
Q ss_pred ccEEEEEeccccceeecCCcCCCCCCCCcceEEEeeecCCCCeEEEEEEEEcCC-----CCccEEEEEEecCCcEEEccC
Q 017748 117 RNIMLLLNPLTKRHRVLPTFYRDLSRCVPSLEGFGFDVGSGDFKLVKILAFGKP-----MNYTEVAVFSLRVNSWRRIQD 191 (366)
Q Consensus 117 ~~~~~V~NP~t~~~~~LP~~~~~~~~~~~~~~~lg~d~~~~~ykvv~~~~~~~~-----~~~~~~~vyss~t~~W~~~~~ 191 (366)
+.+| ++|--+.+|+.+-.|..+.++ +.......|+. +-.+....+.+. ......++|+..+..|..+..
T Consensus 98 ndLy-~Yn~k~~eWkk~~spn~P~pR---sshq~va~~s~--~l~~fGGEfaSPnq~qF~HYkD~W~fd~~trkweql~~ 171 (521)
T KOG1230|consen 98 NDLY-SYNTKKNEWKKVVSPNAPPPR---SSHQAVAVPSN--ILWLFGGEFASPNQEQFHHYKDLWLFDLKTRKWEQLEF 171 (521)
T ss_pred eeee-EEeccccceeEeccCCCcCCC---ccceeEEeccC--eEEEeccccCCcchhhhhhhhheeeeeeccchheeecc
Confidence 3588 999999999887544433332 22223333332 333333333332 345678999999999999863
Q ss_pred C--CcceecCCcceEECCcEEEEEeeCC---CCCCCcEEEEEECCCceeeeeCCCCccCCCCceEEEEEE-CCeEEEEEe
Q 017748 192 F--PYFWVTGTCSVFVNGALHWTAALNQ---DADRNDIIIAFDLKSEEFYQVPLPPIVGIEGYYILLEAL-GGCLCLLCK 265 (366)
Q Consensus 192 ~--~~~~~~~~~~v~~~G~lYw~~~~~~---~~~~~~~i~~fD~~~~~~~~i~lP~~~~~~~~~~~l~~~-~g~L~l~~~ 265 (366)
. |... .....|.....|.-.++-.+ ...+..-+.+||+.+=+|+.+..+......+...++.+. +|.+++.++
T Consensus 172 ~g~PS~R-SGHRMvawK~~lilFGGFhd~nr~y~YyNDvy~FdLdtykW~Klepsga~PtpRSGcq~~vtpqg~i~vyGG 250 (521)
T KOG1230|consen 172 GGGPSPR-SGHRMVAWKRQLILFGGFHDSNRDYIYYNDVYAFDLDTYKWSKLEPSGAGPTPRSGCQFSVTPQGGIVVYGG 250 (521)
T ss_pred CCCCCCC-ccceeEEeeeeEEEEcceecCCCceEEeeeeEEEeccceeeeeccCCCCCCCCCCcceEEecCCCcEEEEcc
Confidence 2 2222 22224444444443333221 112334799999999999998554422122244566777 889988877
Q ss_pred ecCC-------CCCCcEEEEEeccCC---CCCceEEEEEeccCCC-ceeeEEEEecCCcEEEEEee-C------------
Q 017748 266 FDDD-------DDDRPWDLWVMKEYG---VNDSWTKLATLLNVGG-GNVKPLVYSRSEDKVLLHAV-R------------ 321 (366)
Q Consensus 266 ~~~~-------~~~~~l~iW~l~~~~---~~~~W~~~~~i~~~~~-~~~~~~~~~~~g~~i~~~~~-~------------ 321 (366)
+... .+..+-++|.|+... .+-.|.++......+- +----+++++++..++|..- |
T Consensus 251 YsK~~~kK~~dKG~~hsDmf~L~p~~~~~dKw~W~kvkp~g~kPspRsgfsv~va~n~kal~FGGV~D~eeeeEsl~g~F 330 (521)
T KOG1230|consen 251 YSKQRVKKDVDKGTRHSDMFLLKPEDGREDKWVWTKVKPSGVKPSPRSGFSVAVAKNHKALFFGGVCDLEEEEESLSGEF 330 (521)
T ss_pred hhHhhhhhhhhcCceeeeeeeecCCcCCCcceeEeeccCCCCCCCCCCceeEEEecCCceEEecceecccccchhhhhhh
Confidence 6531 244567899997542 2346788776655433 11223566777656777532 1
Q ss_pred -CeEEEEeCCCCeEEEeeeecC
Q 017748 322 -GDLCWYDLERHRVRSIVEIDD 342 (366)
Q Consensus 322 -~~~~~yd~~t~~~~~v~~~~~ 342 (366)
+.+++||+..++|... ++++
T Consensus 331 ~NDLy~fdlt~nrW~~~-qlq~ 351 (521)
T KOG1230|consen 331 FNDLYFFDLTRNRWSEG-QLQG 351 (521)
T ss_pred hhhhhheecccchhhHh-hhcc
Confidence 1399999999999998 8876
|
|
| >KOG4693 consensus Uncharacterized conserved protein, contains kelch repeat [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.28 E-value=5.3e-05 Score=63.77 Aligned_cols=185 Identities=11% Similarity=0.086 Sum_probs=108.4
Q ss_pred EEEeeeceeEEeec-CC------ccEEEEEeccccceeecCCcCCCCCC-CCcceEEEeeecCCCCeEEEEEEEEcCCCC
Q 017748 101 FIIGSCNGLLALED-SR------RNIMLLLNPLTKRHRVLPTFYRDLSR-CVPSLEGFGFDVGSGDFKLVKILAFGKPMN 172 (366)
Q Consensus 101 ~~~~s~~Gll~~~~-~~------~~~~~V~NP~t~~~~~LP~~~~~~~~-~~~~~~~lg~d~~~~~ykvv~~~~~~~~~~ 172 (366)
+.+-.-.+-+.+.. ++ +.++ -++|-|.+|.+.--...-... ...+++.+| +..-|+.....+-+.-
T Consensus 82 HtvV~y~d~~yvWGGRND~egaCN~Ly-~fDp~t~~W~~p~v~G~vPgaRDGHsAcV~g-----n~MyiFGGye~~a~~F 155 (392)
T KOG4693|consen 82 HTVVEYQDKAYVWGGRNDDEGACNLLY-EFDPETNVWKKPEVEGFVPGARDGHSACVWG-----NQMYIFGGYEEDAQRF 155 (392)
T ss_pred ceEEEEcceEEEEcCccCcccccceee-eeccccccccccceeeecCCccCCceeeEEC-----cEEEEecChHHHHHhh
Confidence 34444555555553 11 2355 668999999873211111110 023444444 2223333221111123
Q ss_pred ccEEEEEEecCCcEEEcc--CCCcceecCCcceEECCcEEEEEeeCCCC--------CCCcEEEEEECCCceeeee----
Q 017748 173 YTEVAVFSLRVNSWRRIQ--DFPYFWVTGTCSVFVNGALHWTAALNQDA--------DRNDIIIAFDLKSEEFYQV---- 238 (366)
Q Consensus 173 ~~~~~vyss~t~~W~~~~--~~~~~~~~~~~~v~~~G~lYw~~~~~~~~--------~~~~~i~~fD~~~~~~~~i---- 238 (366)
...+++++..|-+|+.+- .-|..+..+..++.++|.+|-.++..+.. ..-..|++||++++.|..-
T Consensus 156 S~d~h~ld~~TmtWr~~~Tkg~PprwRDFH~a~~~~~~MYiFGGR~D~~gpfHs~~e~Yc~~i~~ld~~T~aW~r~p~~~ 235 (392)
T KOG4693|consen 156 SQDTHVLDFATMTWREMHTKGDPPRWRDFHTASVIDGMMYIFGGRSDESGPFHSIHEQYCDTIMALDLATGAWTRTPENT 235 (392)
T ss_pred hccceeEeccceeeeehhccCCCchhhhhhhhhhccceEEEeccccccCCCccchhhhhcceeEEEeccccccccCCCCC
Confidence 557888999999999874 22333333344777889999998765421 1234899999999999765
Q ss_pred CCCCccCCCCceEEEEEECCeEEEEEeecCCCCCCcEEEEEeccCCCCCceEEEEEecc
Q 017748 239 PLPPIVGIEGYYILLEALGGCLCLLCKFDDDDDDRPWDLWVMKEYGVNDSWTKLATLLN 297 (366)
Q Consensus 239 ~lP~~~~~~~~~~~l~~~~g~L~l~~~~~~~~~~~~l~iW~l~~~~~~~~W~~~~~i~~ 297 (366)
.+|.+. ..-..-+.+|++|++++....-...--++|.++. ....|+++..-..
T Consensus 236 ~~P~GR----RSHS~fvYng~~Y~FGGYng~ln~HfndLy~FdP--~t~~W~~I~~~Gk 288 (392)
T KOG4693|consen 236 MKPGGR----RSHSTFVYNGKMYMFGGYNGTLNVHFNDLYCFDP--KTSMWSVISVRGK 288 (392)
T ss_pred cCCCcc----cccceEEEcceEEEecccchhhhhhhcceeeccc--ccchheeeeccCC
Confidence 234433 2334567899999999987632222347788887 3467999766543
|
|
| >KOG4693 consensus Uncharacterized conserved protein, contains kelch repeat [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.15 E-value=9.5e-05 Score=62.29 Aligned_cols=225 Identities=12% Similarity=0.131 Sum_probs=122.7
Q ss_pred eceeEEeecCCccEEEEEeccccceeecCCcCCC--CCC----C---CcceEEEeeecCCCCeEEEEE-EEEcCCCCccE
Q 017748 106 CNGLLALEDSRRNIMLLLNPLTKRHRVLPTFYRD--LSR----C---VPSLEGFGFDVGSGDFKLVKI-LAFGKPMNYTE 175 (366)
Q Consensus 106 ~~Gll~~~~~~~~~~~V~NP~t~~~~~LP~~~~~--~~~----~---~~~~~~lg~d~~~~~ykvv~~-~~~~~~~~~~~ 175 (366)
|.|-.-=..++-.+. |.|..+-+|.++|+--.. ... . .+......|+ =|+..- ...+++..-..
T Consensus 33 CsGedy~~~~piDVH-~lNa~~~RWtk~pp~~~ka~i~~~yp~VPyqRYGHtvV~y~-----d~~yvWGGRND~egaCN~ 106 (392)
T KOG4693|consen 33 CSGEDYDAKDPIDVH-VLNAENYRWTKMPPGITKATIESPYPAVPYQRYGHTVVEYQ-----DKAYVWGGRNDDEGACNL 106 (392)
T ss_pred ccccccccCCcceeE-EeeccceeEEecCcccccccccCCCCccchhhcCceEEEEc-----ceEEEEcCccCcccccce
Confidence 444443333556678 999999999999983211 110 0 1111111111 022221 22122334456
Q ss_pred EEEEEecCCcEEEcc---CCCcceecCCcceEECCcEEEEEeeCCC-CCCCcEEEEEECCCceeeeeC---CCCccCCCC
Q 017748 176 VAVFSLRVNSWRRIQ---DFPYFWVTGTCSVFVNGALHWTAALNQD-ADRNDIIIAFDLKSEEFYQVP---LPPIVGIEG 248 (366)
Q Consensus 176 ~~vyss~t~~W~~~~---~~~~~~~~~~~~v~~~G~lYw~~~~~~~-~~~~~~i~~fD~~~~~~~~i~---lP~~~~~~~ 248 (366)
..-|+.++..|++.. .+|... ...+++++++.+|-.++..+. +....-+.++|+++.+|+.+. -|+.-+
T Consensus 107 Ly~fDp~t~~W~~p~v~G~vPgaR-DGHsAcV~gn~MyiFGGye~~a~~FS~d~h~ld~~TmtWr~~~Tkg~PprwR--- 182 (392)
T KOG4693|consen 107 LYEFDPETNVWKKPEVEGFVPGAR-DGHSACVWGNQMYIFGGYEEDAQRFSQDTHVLDFATMTWREMHTKGDPPRWR--- 182 (392)
T ss_pred eeeeccccccccccceeeecCCcc-CCceeeEECcEEEEecChHHHHHhhhccceeEeccceeeeehhccCCCchhh---
Confidence 788999999998653 233322 223356677788877765432 111236899999999999983 233221
Q ss_pred ceEEEEEECCeEEEEEeecCCCCCCc-------EEEEEeccCCCCCceEEEEEeccCCCceeeEEEEecCCcEEEEEeeC
Q 017748 249 YYILLEALGGCLCLLCKFDDDDDDRP-------WDLWVMKEYGVNDSWTKLATLLNVGGGNVKPLVYSRSEDKVLLHAVR 321 (366)
Q Consensus 249 ~~~~l~~~~g~L~l~~~~~~~~~~~~-------l~iW~l~~~~~~~~W~~~~~i~~~~~~~~~~~~~~~~g~~i~~~~~~ 321 (366)
..-.-.+++|..|++++..+..++.+ -.|-.|+- ..+.|.+-..-+..+.+-.+-..+.-+| ++++-...
T Consensus 183 DFH~a~~~~~~MYiFGGR~D~~gpfHs~~e~Yc~~i~~ld~--~T~aW~r~p~~~~~P~GRRSHS~fvYng-~~Y~FGGY 259 (392)
T KOG4693|consen 183 DFHTASVIDGMMYIFGGRSDESGPFHSIHEQYCDTIMALDL--ATGAWTRTPENTMKPGGRRSHSTFVYNG-KMYMFGGY 259 (392)
T ss_pred hhhhhhhccceEEEeccccccCCCccchhhhhcceeEEEec--cccccccCCCCCcCCCcccccceEEEcc-eEEEeccc
Confidence 12234566899999988765321110 12223333 2356887533332221112222233345 66655332
Q ss_pred --------CeEEEEeCCCCeEEEeeeecCcc
Q 017748 322 --------GDLCWYDLERHRVRSIVEIDDKV 344 (366)
Q Consensus 322 --------~~~~~yd~~t~~~~~v~~~~~~~ 344 (366)
..++.||++|..|..+ +..|+.
T Consensus 260 ng~ln~HfndLy~FdP~t~~W~~I-~~~Gk~ 289 (392)
T KOG4693|consen 260 NGTLNVHFNDLYCFDPKTSMWSVI-SVRGKY 289 (392)
T ss_pred chhhhhhhcceeecccccchheee-eccCCC
Confidence 1399999999999999 888743
|
|
| >KOG0379 consensus Kelch repeat-containing proteins [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.99 E-value=0.00077 Score=64.41 Aligned_cols=207 Identities=18% Similarity=0.138 Sum_probs=123.2
Q ss_pred cEEEEEeccccceeecCCcCCCCCC-CCcceEEEeeecCCCCeEEEEEEEEcCCCCccEEEEEEecCCcEEEccCCCc--
Q 017748 118 NIMLLLNPLTKRHRVLPTFYRDLSR-CVPSLEGFGFDVGSGDFKLVKILAFGKPMNYTEVAVFSLRVNSWRRIQDFPY-- 194 (366)
Q Consensus 118 ~~~~V~NP~t~~~~~LP~~~~~~~~-~~~~~~~lg~d~~~~~ykvv~~~~~~~~~~~~~~~vyss~t~~W~~~~~~~~-- 194 (366)
.++ |+|--+..|............ ....+.+++ ++-++.............++.|+..|++|+.+.....
T Consensus 89 dl~-~~d~~~~~w~~~~~~g~~p~~r~g~~~~~~~------~~l~lfGG~~~~~~~~~~l~~~d~~t~~W~~l~~~~~~P 161 (482)
T KOG0379|consen 89 DLY-VLDLESQLWTKPAATGDEPSPRYGHSLSAVG------DKLYLFGGTDKKYRNLNELHSLDLSTRTWSLLSPTGDPP 161 (482)
T ss_pred eeE-EeecCCcccccccccCCCCCcccceeEEEEC------CeEEEEccccCCCCChhheEeccCCCCcEEEecCcCCCC
Confidence 488 999999888876543322111 012223333 2222222221122335689999999999998753322
Q ss_pred -ceecCCcceEECCcEEEEEeeCCCCCCCcEEEEEECCCceeeeeCCCCccCCCCceEEEEEECCeEEEEEeecCCCCCC
Q 017748 195 -FWVTGTCSVFVNGALHWTAALNQDADRNDIIIAFDLKSEEFYQVPLPPIVGIEGYYILLEALGGCLCLLCKFDDDDDDR 273 (366)
Q Consensus 195 -~~~~~~~~v~~~G~lYw~~~~~~~~~~~~~i~~fD~~~~~~~~i~lP~~~~~~~~~~~l~~~~g~L~l~~~~~~~~~~~ 273 (366)
.. .....+.++.++|..++..........+.+||+++.+|..+.........+....++..+++++++.+... ....
T Consensus 162 ~~r-~~Hs~~~~g~~l~vfGG~~~~~~~~ndl~i~d~~~~~W~~~~~~g~~P~pR~gH~~~~~~~~~~v~gG~~~-~~~~ 239 (482)
T KOG0379|consen 162 PPR-AGHSATVVGTKLVVFGGIGGTGDSLNDLHIYDLETSTWSELDTQGEAPSPRYGHAMVVVGNKLLVFGGGDD-GDVY 239 (482)
T ss_pred CCc-ccceEEEECCEEEEECCccCcccceeeeeeeccccccceecccCCCCCCCCCCceEEEECCeEEEEecccc-CCce
Confidence 22 23335667778888877664443567899999999999988543332122245567888999999888662 1111
Q ss_pred cEEEEEeccCCCCCceEEEEEeccCCC-ceeeEEEEecCCcEEEEEe-eC-------CeEEEEeCCCCeEEEe
Q 017748 274 PWDLWVMKEYGVNDSWTKLATLLNVGG-GNVKPLVYSRSEDKVLLHA-VR-------GDLCWYDLERHRVRSI 337 (366)
Q Consensus 274 ~l~iW~l~~~~~~~~W~~~~~i~~~~~-~~~~~~~~~~~g~~i~~~~-~~-------~~~~~yd~~t~~~~~v 337 (366)
-=++|.|+-. ..+|.++.......- +..+...+..+ .+++.. .. ..++.||.+++.|.++
T Consensus 240 l~D~~~ldl~--~~~W~~~~~~g~~p~~R~~h~~~~~~~--~~~l~gG~~~~~~~~l~~~~~l~~~~~~w~~~ 308 (482)
T KOG0379|consen 240 LNDVHILDLS--TWEWKLLPTGGDLPSPRSGHSLTVSGD--HLLLFGGGTDPKQEPLGDLYGLDLETLVWSKV 308 (482)
T ss_pred ecceEeeecc--cceeeeccccCCCCCCcceeeeEEECC--EEEEEcCCcccccccccccccccccccceeee
Confidence 3378888863 366886544332211 22444443322 444442 21 2389999999999999
|
|
| >KOG0281 consensus Beta-TrCP (transducin repeats containing)/Slimb proteins [Function unknown] | Back alignment and domain information |
|---|
Probab=97.93 E-value=0.00012 Score=63.85 Aligned_cols=43 Identities=19% Similarity=0.271 Sum_probs=38.6
Q ss_pred CCCCc----HHHHHHHHccCCcccceeeeccchhhhhhcCChhHHHH
Q 017748 4 SVQLP----LDLIVDILIRLPVRSLARFRCVSRSFRSLIDGQDFVNR 46 (366)
Q Consensus 4 ~~~LP----~dll~~IL~rLP~~~l~r~r~VcK~W~~li~s~~F~~~ 46 (366)
+..|| +++.+.||+.|...+|..|..|||+|+++++++...+.
T Consensus 75 i~~lP~~gl~hi~e~ilsyld~~sLc~celv~k~W~r~l~dg~~WKk 121 (499)
T KOG0281|consen 75 ITALPEQGLDHIAENILSYLDALSLCACELVCKEWKRVLSDGMLWKK 121 (499)
T ss_pred HHhcccccHHHHHHHHHHhcchhhhhHHHHHHHHHHHHhccchHHHH
Confidence 35689 99999999999999999999999999999999876554
|
|
| >KOG0379 consensus Kelch repeat-containing proteins [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.91 E-value=0.00074 Score=64.53 Aligned_cols=157 Identities=16% Similarity=0.194 Sum_probs=105.9
Q ss_pred EEEEEEecCCcEEEccC---CCcceecCCcceEECCcEEEEEeeCCCCCCCcEEEEEECCCceeeeeC----CCCccCCC
Q 017748 175 EVAVFSLRVNSWRRIQD---FPYFWVTGTCSVFVNGALHWTAALNQDADRNDIIIAFDLKSEEFYQVP----LPPIVGIE 247 (366)
Q Consensus 175 ~~~vyss~t~~W~~~~~---~~~~~~~~~~~v~~~G~lYw~~~~~~~~~~~~~i~~fD~~~~~~~~i~----lP~~~~~~ 247 (366)
.+.+++.++..|..... .|... .....++++..+|.+++..........+..||+.+.+|..+. .|...
T Consensus 89 dl~~~d~~~~~w~~~~~~g~~p~~r-~g~~~~~~~~~l~lfGG~~~~~~~~~~l~~~d~~t~~W~~l~~~~~~P~~r--- 164 (482)
T KOG0379|consen 89 DLYVLDLESQLWTKPAATGDEPSPR-YGHSLSAVGDKLYLFGGTDKKYRNLNELHSLDLSTRTWSLLSPTGDPPPPR--- 164 (482)
T ss_pred eeEEeecCCcccccccccCCCCCcc-cceeEEEECCeEEEEccccCCCCChhheEeccCCCCcEEEecCcCCCCCCc---
Confidence 69999999999976542 23222 334467899999999987742333458999999999998872 24333
Q ss_pred CceEEEEEECCeEEEEEeecCCCCCCcEEEEEeccCCCCCceEEEEEeccCCC-ceeeEEEEecCCcEEEEEee-C-C--
Q 017748 248 GYYILLEALGGCLCLLCKFDDDDDDRPWDLWVMKEYGVNDSWTKLATLLNVGG-GNVKPLVYSRSEDKVLLHAV-R-G-- 322 (366)
Q Consensus 248 ~~~~~l~~~~g~L~l~~~~~~~~~~~~l~iW~l~~~~~~~~W~~~~~i~~~~~-~~~~~~~~~~~g~~i~~~~~-~-~-- 322 (366)
..-.++..+.+|++.++..... ...-++|+++-. ..+|.++.+.+...- +..+.+++.++. +++... + +
T Consensus 165 -~~Hs~~~~g~~l~vfGG~~~~~-~~~ndl~i~d~~--~~~W~~~~~~g~~P~pR~gH~~~~~~~~--~~v~gG~~~~~~ 238 (482)
T KOG0379|consen 165 -AGHSATVVGTKLVVFGGIGGTG-DSLNDLHIYDLE--TSTWSELDTQGEAPSPRYGHAMVVVGNK--LLVFGGGDDGDV 238 (482)
T ss_pred -ccceEEEECCEEEEECCccCcc-cceeeeeeeccc--cccceecccCCCCCCCCCCceEEEECCe--EEEEeccccCCc
Confidence 3445677789999998876532 145688998873 356999988866443 234445555443 444332 2 1
Q ss_pred ---eEEEEeCCCCeEEEeeeecC
Q 017748 323 ---DLCWYDLERHRVRSIVEIDD 342 (366)
Q Consensus 323 ---~~~~yd~~t~~~~~v~~~~~ 342 (366)
.+..+|+.+.+|+++ ...+
T Consensus 239 ~l~D~~~ldl~~~~W~~~-~~~g 260 (482)
T KOG0379|consen 239 YLNDVHILDLSTWEWKLL-PTGG 260 (482)
T ss_pred eecceEeeecccceeeec-cccC
Confidence 399999999999977 5444
|
|
| >KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=97.67 E-value=1.2e-05 Score=68.96 Aligned_cols=40 Identities=20% Similarity=0.320 Sum_probs=37.0
Q ss_pred CCCCcHHHHHHHHccCCcccceeeeccchhhhhhcCChhH
Q 017748 4 SVQLPLDLIVDILIRLPVRSLARFRCVSRSFRSLIDGQDF 43 (366)
Q Consensus 4 ~~~LP~dll~~IL~rLP~~~l~r~r~VcK~W~~li~s~~F 43 (366)
+..||||+++.||+.||.|+|+++..|||+|+++.++.+.
T Consensus 98 ~~slpDEill~IFs~L~kk~LL~~~~VC~Rfyr~~~de~l 137 (419)
T KOG2120|consen 98 WDSLPDEILLGIFSCLCKKELLKVSGVCKRFYRLASDESL 137 (419)
T ss_pred cccCCHHHHHHHHHhccHHHHHHHHHHHHHHhhccccccc
Confidence 6789999999999999999999999999999999877654
|
|
| >KOG1230 consensus Protein containing repeated kelch motifs [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.45 E-value=0.019 Score=51.86 Aligned_cols=119 Identities=17% Similarity=0.196 Sum_probs=76.2
Q ss_pred ccEEEEEEecCCcEEEccCC--CcceecCCcceEECCcEEEEEeeCCCC----C-CCcEEEEEECCCceeeeeCCCCccC
Q 017748 173 YTEVAVFSLRVNSWRRIQDF--PYFWVTGTCSVFVNGALHWTAALNQDA----D-RNDIIIAFDLKSEEFYQVPLPPIVG 245 (366)
Q Consensus 173 ~~~~~vyss~t~~W~~~~~~--~~~~~~~~~~v~~~G~lYw~~~~~~~~----~-~~~~i~~fD~~~~~~~~i~lP~~~~ 245 (366)
......|+..+++|+.+..+ |......+..|.-.|.+|..++.-..+ . ...-+-.||+.+.+|..+.++...
T Consensus 97 YndLy~Yn~k~~eWkk~~spn~P~pRsshq~va~~s~~l~~fGGEfaSPnq~qF~HYkD~W~fd~~trkweql~~~g~P- 175 (521)
T KOG1230|consen 97 YNDLYSYNTKKNEWKKVVSPNAPPPRSSHQAVAVPSNILWLFGGEFASPNQEQFHHYKDLWLFDLKTRKWEQLEFGGGP- 175 (521)
T ss_pred eeeeeEEeccccceeEeccCCCcCCCccceeEEeccCeEEEeccccCCcchhhhhhhhheeeeeeccchheeeccCCCC-
Confidence 34678899999999988643 333223443344447666666544321 1 223688999999999999888765
Q ss_pred CCCceEEEEEECCeEEEEEeecCCCCC--CcEEEEEeccCCCCCceEEEEE
Q 017748 246 IEGYYILLEALGGCLCLLCKFDDDDDD--RPWDLWVMKEYGVNDSWTKLAT 294 (366)
Q Consensus 246 ~~~~~~~l~~~~g~L~l~~~~~~~~~~--~~l~iW~l~~~~~~~~W~~~~~ 294 (366)
..+..-.+++...+|.++++..+.+.. ---+||.++= ...+|+++..
T Consensus 176 S~RSGHRMvawK~~lilFGGFhd~nr~y~YyNDvy~FdL--dtykW~Klep 224 (521)
T KOG1230|consen 176 SPRSGHRMVAWKRQLILFGGFHDSNRDYIYYNDVYAFDL--DTYKWSKLEP 224 (521)
T ss_pred CCCccceeEEeeeeEEEEcceecCCCceEEeeeeEEEec--cceeeeeccC
Confidence 223444688899999998886653211 1125666554 2357999876
|
|
| >PF13964 Kelch_6: Kelch motif | Back alignment and domain information |
|---|
Probab=96.98 E-value=0.0019 Score=40.63 Aligned_cols=42 Identities=17% Similarity=0.380 Sum_probs=34.1
Q ss_pred cceEECCcEEEEEeeCCCCCCCcEEEEEECCCceeeee-CCCC
Q 017748 201 CSVFVNGALHWTAALNQDADRNDIIIAFDLKSEEFYQV-PLPP 242 (366)
Q Consensus 201 ~~v~~~G~lYw~~~~~~~~~~~~~i~~fD~~~~~~~~i-~lP~ 242 (366)
..+.++|.||.+++..........+..||+++++|+.+ ++|.
T Consensus 6 s~v~~~~~iyv~GG~~~~~~~~~~v~~yd~~t~~W~~~~~mp~ 48 (50)
T PF13964_consen 6 SAVVVGGKIYVFGGYDNSGKYSNDVERYDPETNTWEQLPPMPT 48 (50)
T ss_pred EEEEECCEEEEECCCCCCCCccccEEEEcCCCCcEEECCCCCC
Confidence 46889999999998875333446899999999999998 6664
|
|
| >KOG2997 consensus F-box protein FBX9 [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.85 E-value=0.00038 Score=60.26 Aligned_cols=46 Identities=20% Similarity=0.252 Sum_probs=40.8
Q ss_pred CCCCcHHHHHHHHccCC-----cccceeeeccchhhhhhcCChhHHHHHHh
Q 017748 4 SVQLPLDLIVDILIRLP-----VRSLARFRCVSRSFRSLIDGQDFVNRYVN 49 (366)
Q Consensus 4 ~~~LP~dll~~IL~rLP-----~~~l~r~r~VcK~W~~li~s~~F~~~~~~ 49 (366)
++.||||+|.+||.|+= ..+|.++.+|||.|+-..++|+|.+....
T Consensus 107 ~~~LPdEvLm~I~~~vv~~~~d~rsL~~~s~vCr~F~~~~R~~~lwR~aC~ 157 (366)
T KOG2997|consen 107 ISVLPDEVLMRIFRWVVSSLLDLRSLEQLSLVCRGFYKCARDPELWRLACL 157 (366)
T ss_pred hhhCCHHHHHHHHHHHHhhhcchhhHHHhHhhHHHHHHHHcChHHHHHHHH
Confidence 57899999999999874 58999999999999999999999887544
|
|
| >PF02191 OLF: Olfactomedin-like domain; InterPro: IPR003112 The olfactomedin-domain was first identified in olfactomedin, an extracellular matrix protein of the olfactory neuroepithelium [] | Back alignment and domain information |
|---|
Probab=96.68 E-value=0.11 Score=45.03 Aligned_cols=126 Identities=13% Similarity=0.120 Sum_probs=82.8
Q ss_pred CcceEECCcEEEEEeeCCCCCCCcEEEEEECCCceee-eeCCCCccCC--------CCceEEEEEECCeEEEEEeecCCC
Q 017748 200 TCSVFVNGALHWTAALNQDADRNDIIIAFDLKSEEFY-QVPLPPIVGI--------EGYYILLEALGGCLCLLCKFDDDD 270 (366)
Q Consensus 200 ~~~v~~~G~lYw~~~~~~~~~~~~~i~~fD~~~~~~~-~i~lP~~~~~--------~~~~~~l~~~~g~L~l~~~~~~~~ 270 (366)
+..|+-||.+|+..... ..|+.||+.++... ...||..... ......+++-+..|.++....+.
T Consensus 72 tG~vVYngslYY~~~~s------~~IvkydL~t~~v~~~~~L~~A~~~n~~~y~~~~~t~iD~AvDE~GLWvIYat~~~- 144 (250)
T PF02191_consen 72 TGHVVYNGSLYYNKYNS------RNIVKYDLTTRSVVARRELPGAGYNNRFPYYWSGYTDIDFAVDENGLWVIYATEDN- 144 (250)
T ss_pred CCeEEECCcEEEEecCC------ceEEEEECcCCcEEEEEECCccccccccceecCCCceEEEEEcCCCEEEEEecCCC-
Confidence 44678999999998755 48999999999998 7788876511 12346788888889988776542
Q ss_pred CCCcEEEEEeccC--CCCCceEEEEEeccCCCceeeEEEEecCCcEEEEEeeCC----e-EEEEeCCCCeEEEeeeec
Q 017748 271 DDRPWDLWVMKEY--GVNDSWTKLATLLNVGGGNVKPLVYSRSEDKVLLHAVRG----D-LCWYDLERHRVRSIVEID 341 (366)
Q Consensus 271 ~~~~l~iW~l~~~--~~~~~W~~~~~i~~~~~~~~~~~~~~~~g~~i~~~~~~~----~-~~~yd~~t~~~~~v~~~~ 341 (366)
...+.|-.|+.. ..+..|..-. +... --.+|-.+| .++...... + .++||+.+++-+.+ .|.
T Consensus 145 -~g~ivvskld~~tL~v~~tw~T~~--~k~~----~~naFmvCG-vLY~~~s~~~~~~~I~yafDt~t~~~~~~-~i~ 213 (250)
T PF02191_consen 145 -NGNIVVSKLDPETLSVEQTWNTSY--PKRS----AGNAFMVCG-VLYATDSYDTRDTEIFYAFDTYTGKEEDV-SIP 213 (250)
T ss_pred -CCcEEEEeeCcccCceEEEEEecc--Cchh----hcceeeEee-EEEEEEECCCCCcEEEEEEECCCCceece-eee
Confidence 124777777754 2345566422 1111 112333345 666654322 2 79999999999887 664
|
Members of this extracellular domain-family have since been shown to be present in several metazoan proteins, such as latrophilins, myocilins, optimedins and noelins, the latter being involved in the generation of neural crest cells. Myocilin is of considerable interest, as mutations in its olfactomedin-domain can lead to glaucoma []. The olfactomedin-domains in myocilin and optimedin are essential for the interaction between these two proteins [].; GO: 0005515 protein binding |
| >PF01344 Kelch_1: Kelch motif; InterPro: IPR006652 Kelch is a 50-residue motif, named after the Drosophila mutant in which it was first identified [] | Back alignment and domain information |
|---|
Probab=96.55 E-value=0.0052 Score=37.94 Aligned_cols=41 Identities=12% Similarity=0.369 Sum_probs=34.0
Q ss_pred cceEECCcEEEEEeeCCCCCCCcEEEEEECCCceeeee-CCC
Q 017748 201 CSVFVNGALHWTAALNQDADRNDIIIAFDLKSEEFYQV-PLP 241 (366)
Q Consensus 201 ~~v~~~G~lYw~~~~~~~~~~~~~i~~fD~~~~~~~~i-~lP 241 (366)
..+.++|.+|.+++..........+..||+++++|..+ +||
T Consensus 6 ~~~~~~~~iyv~GG~~~~~~~~~~v~~yd~~~~~W~~~~~mp 47 (47)
T PF01344_consen 6 AAVVVGNKIYVIGGYDGNNQPTNSVEVYDPETNTWEELPPMP 47 (47)
T ss_dssp EEEEETTEEEEEEEBESTSSBEEEEEEEETTTTEEEEEEEES
T ss_pred EEEEECCEEEEEeeecccCceeeeEEEEeCCCCEEEEcCCCC
Confidence 46889999999998876445567999999999999887 554
|
This sequence motif represents one beta-sheet blade, and several of these repeats can associate to form a beta-propeller. For instance, the motif appears 6 times in Drosophila egg-chamber regulatory protein, creating a 6-bladed beta-propeller. The motif is also found in mouse protein MIPP [] and in a number of poxviruses. In addition, kelch repeats have been recognised in alpha- and beta-scruin [, ], and in galactose oxidase from the fungus Dactylium dendroides [, ]. The structure of galactose oxidase reveals that the repeated sequence corresponds to a 4-stranded anti-parallel beta-sheet motif that forms the repeat unit in a super-barrel structural fold []. The known functions of kelch-containing proteins are diverse: scruin is an actin cross-linking protein; galactose oxidase catalyses the oxidation of the hydroxyl group at the C6 position in D-galactose; neuraminidase hydrolyses sialic acid residues from glycoproteins; and kelch may have a cytoskeletal function, as it is localised to the actin-rich ring canals that connect the 15 nurse cells to the developing oocyte in Drosophila []. Nevertheless, based on the location of the kelch pattern in the catalytic unit in galactose oxidase, functionally important residues have been predicted in glyoxal oxidase []. This entry represents a type of kelch sequence motif that comprises one beta-sheet blade.; GO: 0005515 protein binding; PDB: 2XN4_A 2WOZ_A 3II7_A 4ASC_A 1U6D_X 1ZGK_A 2FLU_X 2VPJ_A 2DYH_A 1X2R_A .... |
| >COG3055 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=96.31 E-value=0.063 Score=47.70 Aligned_cols=121 Identities=18% Similarity=0.229 Sum_probs=79.2
Q ss_pred ccEEEEEEecCCcEEEccCC-CcceecCCcceEECC-cEEEEEeeCCC--------------------------------
Q 017748 173 YTEVAVFSLRVNSWRRIQDF-PYFWVTGTCSVFVNG-ALHWTAALNQD-------------------------------- 218 (366)
Q Consensus 173 ~~~~~vyss~t~~W~~~~~~-~~~~~~~~~~v~~~G-~lYw~~~~~~~-------------------------------- 218 (366)
...+..|++.+++|..++.. |.. .....++..++ .+|+.++....
T Consensus 112 ~nd~Y~y~p~~nsW~kl~t~sP~g-l~G~~~~~~~~~~i~f~GGvn~~if~~yf~dv~~a~~d~~~~~~i~~~yf~~~~~ 190 (381)
T COG3055 112 FNDAYRYDPSTNSWHKLDTRSPTG-LVGASTFSLNGTKIYFFGGVNQNIFNGYFEDVGAAGKDKEAVDKIIAHYFDKKAE 190 (381)
T ss_pred eeeeEEecCCCChhheeccccccc-cccceeEecCCceEEEEccccHHhhhhhHHhhhhhcccHHHHHHHHHHHhCCCHH
Confidence 34678899999999988754 444 22233455555 88887754321
Q ss_pred -CCCCcEEEEEECCCceeeee-CCCCccCCCCceEEEEEECCeEEEEEeecCCCCCCcEEEEEeccCCCCCceEEEEEec
Q 017748 219 -ADRNDIIIAFDLKSEEFYQV-PLPPIVGIEGYYILLEALGGCLCLLCKFDDDDDDRPWDLWVMKEYGVNDSWTKLATLL 296 (366)
Q Consensus 219 -~~~~~~i~~fD~~~~~~~~i-~lP~~~~~~~~~~~l~~~~g~L~l~~~~~~~~~~~~l~iW~l~~~~~~~~W~~~~~i~ 296 (366)
......+++||+.+++|+.. ..|...+. ...++.-+++|.++..+-.+ .-+...+|+.+-.+...+|.++..++
T Consensus 191 dy~~n~ev~sy~p~~n~W~~~G~~pf~~~a---Gsa~~~~~n~~~lInGEiKp-GLRt~~~k~~~~~~~~~~w~~l~~lp 266 (381)
T COG3055 191 DYFFNKEVLSYDPSTNQWRNLGENPFYGNA---GSAVVIKGNKLTLINGEIKP-GLRTAEVKQADFGGDNLKWLKLSDLP 266 (381)
T ss_pred HhcccccccccccccchhhhcCcCcccCcc---CcceeecCCeEEEEcceecC-CccccceeEEEeccCceeeeeccCCC
Confidence 11345899999999999988 68876622 12233345678888886553 34466677766544557899987766
Q ss_pred cC
Q 017748 297 NV 298 (366)
Q Consensus 297 ~~ 298 (366)
..
T Consensus 267 ~~ 268 (381)
T COG3055 267 AP 268 (381)
T ss_pred CC
Confidence 53
|
|
| >KOG0274 consensus Cdc4 and related F-box and WD-40 proteins [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.30 E-value=0.47 Score=45.99 Aligned_cols=42 Identities=31% Similarity=0.356 Sum_probs=37.7
Q ss_pred CCCCcHHHHHHHHccCCcccceeeeccchhhhhhcCChhHHH
Q 017748 4 SVQLPLDLIVDILIRLPVRSLARFRCVSRSFRSLIDGQDFVN 45 (366)
Q Consensus 4 ~~~LP~dll~~IL~rLP~~~l~r~r~VcK~W~~li~s~~F~~ 45 (366)
+..||.++...||..|+.+++++++.||+.|+.++.+.....
T Consensus 108 i~~lp~el~~~il~~Ld~~~l~~~~~v~~~w~~~~~~~~~~~ 149 (537)
T KOG0274|consen 108 LSLLPSELSLHILSFLDGRDLLAVRQVCRNWNKLLDDDKVWW 149 (537)
T ss_pred hhcccchhcccccccCCHHHhhhhhhhcchhhhhhhccchhh
Confidence 467999999999999999999999999999999998765554
|
|
| >smart00284 OLF Olfactomedin-like domains | Back alignment and domain information |
|---|
Probab=96.28 E-value=0.18 Score=43.42 Aligned_cols=126 Identities=14% Similarity=0.125 Sum_probs=81.4
Q ss_pred CcceEECCcEEEEEeeCCCCCCCcEEEEEECCCceeeee-CCCCcc-CC-------CCceEEEEEECCeEEEEEeecCCC
Q 017748 200 TCSVFVNGALHWTAALNQDADRNDIIIAFDLKSEEFYQV-PLPPIV-GI-------EGYYILLEALGGCLCLLCKFDDDD 270 (366)
Q Consensus 200 ~~~v~~~G~lYw~~~~~~~~~~~~~i~~fD~~~~~~~~i-~lP~~~-~~-------~~~~~~l~~~~g~L~l~~~~~~~~ 270 (366)
+..|+-||.+|+..... ..|+.||+.+++.... .||... .. ....+.+++-+..|.++......
T Consensus 77 tG~VVYngslYY~~~~s------~~iiKydL~t~~v~~~~~Lp~a~y~~~~~Y~~~~~sdiDlAvDE~GLWvIYat~~~- 149 (255)
T smart00284 77 TGVVVYNGSLYFNKFNS------HDICRFDLTTETYQKEPLLNGAGYNNRFPYAWGGFSDIDLAVDENGLWVIYATEQN- 149 (255)
T ss_pred ccEEEECceEEEEecCC------ccEEEEECCCCcEEEEEecCccccccccccccCCCccEEEEEcCCceEEEEeccCC-
Confidence 44789999999976554 4799999999999644 677532 11 12357889989999998776542
Q ss_pred CCCcEEEEEeccCC--CCCceEEEEEeccCCCceeeEEEEecCCcEEEEEee----CCe-EEEEeCCCCeEEEeeeec
Q 017748 271 DDRPWDLWVMKEYG--VNDSWTKLATLLNVGGGNVKPLVYSRSEDKVLLHAV----RGD-LCWYDLERHRVRSIVEID 341 (366)
Q Consensus 271 ~~~~l~iW~l~~~~--~~~~W~~~~~i~~~~~~~~~~~~~~~~g~~i~~~~~----~~~-~~~yd~~t~~~~~v~~~~ 341 (366)
...|.|-.|+... .++.|..-+.-... -.+|-.+| .++.... +.+ .++||+.|++-+.+ .|.
T Consensus 150 -~g~ivvSkLnp~tL~ve~tW~T~~~k~sa------~naFmvCG-vLY~~~s~~~~~~~I~yayDt~t~~~~~~-~i~ 218 (255)
T smart00284 150 -AGKIVISKLNPATLTIENTWITTYNKRSA------SNAFMICG-ILYVTRSLGSKGEKVFYAYDTNTGKEGHL-DIP 218 (255)
T ss_pred -CCCEEEEeeCcccceEEEEEEcCCCcccc------cccEEEee-EEEEEccCCCCCcEEEEEEECCCCcccee-eee
Confidence 2278888888642 24556652221111 12333345 5666542 222 89999999998777 553
|
|
| >PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A | Back alignment and domain information |
|---|
Probab=96.16 E-value=0.71 Score=39.39 Aligned_cols=191 Identities=12% Similarity=0.024 Sum_probs=95.5
Q ss_pred eceeEEeecCCccEEEEEeccccceeecCCcCCCCCCCCcceEEEeeecCCCCeEEEEEEEEcCCCCccEEEEEEecCC-
Q 017748 106 CNGLLALEDSRRNIMLLLNPLTKRHRVLPTFYRDLSRCVPSLEGFGFDVGSGDFKLVKILAFGKPMNYTEVAVFSLRVN- 184 (366)
Q Consensus 106 ~~Gll~~~~~~~~~~~V~NP~t~~~~~LP~~~~~~~~~~~~~~~lg~d~~~~~ykvv~~~~~~~~~~~~~~~vyss~t~- 184 (366)
.+|.+.+......++ .+|+.|++..+--..+..... . +....=+|++.. . ...+..++..++
T Consensus 35 ~~~~v~~~~~~~~l~-~~d~~tG~~~W~~~~~~~~~~---~-------~~~~~~~v~v~~--~----~~~l~~~d~~tG~ 97 (238)
T PF13360_consen 35 DGGRVYVASGDGNLY-ALDAKTGKVLWRFDLPGPISG---A-------PVVDGGRVYVGT--S----DGSLYALDAKTGK 97 (238)
T ss_dssp ETTEEEEEETTSEEE-EEETTTSEEEEEEECSSCGGS---G-------EEEETTEEEEEE--T----TSEEEEEETTTSC
T ss_pred eCCEEEEEcCCCEEE-EEECCCCCEEEEeeccccccc---e-------eeeccccccccc--c----eeeeEecccCCcc
Confidence 677777776677888 999999986553333222111 1 110111233222 1 226777776554
Q ss_pred -cEE-EccCCCc-ceecCCcceEECCcEEEEEeeCCCCCCCcEEEEEECCCcee--ee-eCCCCccCC----CCceEEEE
Q 017748 185 -SWR-RIQDFPY-FWVTGTCSVFVNGALHWTAALNQDADRNDIIIAFDLKSEEF--YQ-VPLPPIVGI----EGYYILLE 254 (366)
Q Consensus 185 -~W~-~~~~~~~-~~~~~~~~v~~~G~lYw~~~~~~~~~~~~~i~~fD~~~~~~--~~-i~lP~~~~~----~~~~~~l~ 254 (366)
.|+ .....+. .........+.++.+|.....+ .|.++|+++.+- .. +..|..... ......+.
T Consensus 98 ~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g-------~l~~~d~~tG~~~w~~~~~~~~~~~~~~~~~~~~~~~~ 170 (238)
T PF13360_consen 98 VLWSIYLTSSPPAGVRSSSSPAVDGDRLYVGTSSG-------KLVALDPKTGKLLWKYPVGEPRGSSPISSFSDINGSPV 170 (238)
T ss_dssp EEEEEEE-SSCTCSTB--SEEEEETTEEEEEETCS-------EEEEEETTTTEEEEEEESSTT-SS--EEEETTEEEEEE
T ss_pred eeeeeccccccccccccccCceEecCEEEEEeccC-------cEEEEecCCCcEEEEeecCCCCCCcceeeecccccceE
Confidence 698 3433221 1112222333345555554333 799999997654 33 233332110 01123444
Q ss_pred EECCeEEEEEeecCCCCCCcEEEEEeccCCCCCceEEEEEeccCCCceeeEEE-EecCCcEEEEEeeCCeEEEEeCCCCe
Q 017748 255 ALGGCLCLLCKFDDDDDDRPWDLWVMKEYGVNDSWTKLATLLNVGGGNVKPLV-YSRSEDKVLLHAVRGDLCWYDLERHR 333 (366)
Q Consensus 255 ~~~g~L~l~~~~~~~~~~~~l~iW~l~~~~~~~~W~~~~~i~~~~~~~~~~~~-~~~~g~~i~~~~~~~~~~~yd~~t~~ 333 (366)
..+|.+++...... .+.+ -+.. .+..|+.. +.. +.. ....++.|++...+++++++|++|++
T Consensus 171 ~~~~~v~~~~~~g~-----~~~~-d~~t--g~~~w~~~--~~~-------~~~~~~~~~~~l~~~~~~~~l~~~d~~tG~ 233 (238)
T PF13360_consen 171 ISDGRVYVSSGDGR-----VVAV-DLAT--GEKLWSKP--ISG-------IYSLPSVDGGTLYVTSSDGRLYALDLKTGK 233 (238)
T ss_dssp CCTTEEEEECCTSS-----EEEE-ETTT--TEEEEEEC--SS--------ECECEECCCTEEEEEETTTEEEEEETTTTE
T ss_pred EECCEEEEEcCCCe-----EEEE-ECCC--CCEEEEec--CCC-------ccCCceeeCCEEEEEeCCCEEEEEECCCCC
Confidence 44676666544321 2322 2222 22236321 111 111 23445588888777889999999999
Q ss_pred EEEe
Q 017748 334 VRSI 337 (366)
Q Consensus 334 ~~~v 337 (366)
..+.
T Consensus 234 ~~W~ 237 (238)
T PF13360_consen 234 VVWQ 237 (238)
T ss_dssp EEEE
T ss_pred EEeE
Confidence 8764
|
... |
| >PF07646 Kelch_2: Kelch motif; InterPro: IPR011498 Kelch is a 50-residue motif, named after the Drosophila mutant in which it was first identified [] | Back alignment and domain information |
|---|
Probab=95.58 E-value=0.034 Score=34.65 Aligned_cols=39 Identities=10% Similarity=0.322 Sum_probs=31.4
Q ss_pred cceEECCcEEEEEee--CCCCCCCcEEEEEECCCceeeeeC
Q 017748 201 CSVFVNGALHWTAAL--NQDADRNDIIIAFDLKSEEFYQVP 239 (366)
Q Consensus 201 ~~v~~~G~lYw~~~~--~~~~~~~~~i~~fD~~~~~~~~i~ 239 (366)
.++.++|+||.+++. .........+..||+++++|+.++
T Consensus 6 s~~~~~~kiyv~GG~~~~~~~~~~~~v~~~d~~t~~W~~~~ 46 (49)
T PF07646_consen 6 SAVVLDGKIYVFGGYGTDNGGSSSNDVWVFDTETNQWTELS 46 (49)
T ss_pred EEEEECCEEEEECCcccCCCCcccceeEEEECCCCEEeecC
Confidence 467899999999988 333344568999999999999884
|
This sequence motif represents one beta-sheet blade, and several of these repeats can associate to form a beta-propeller. For instance, the motif appears 6 times in Drosophila egg-chamber regulatory protein, creating a 6-bladed beta-propeller. The motif is also found in mouse protein MIPP [] and in a number of poxviruses. In addition, kelch repeats have been recognised in alpha- and beta-scruin [, ], and in galactose oxidase from the fungus Dactylium dendroides [, ]. The structure of galactose oxidase reveals that the repeated sequence corresponds to a 4-stranded anti-parallel beta-sheet motif that forms the repeat unit in a super-barrel structural fold []. The known functions of kelch-containing proteins are diverse: scruin is an actin cross-linking protein; galactose oxidase catalyses the oxidation of the hydroxyl group at the C6 position in D-galactose; neuraminidase hydrolyses sialic acid residues from glycoproteins; and kelch may have a cytoskeletal function, as it is localised to the actin-rich ring canals that connect the 15 nurse cells to the developing oocyte in Drosophila []. Nevertheless, based on the location of the kelch pattern in the catalytic unit in galactose oxidase, functionally important residues have been predicted in glyoxal oxidase []. This entry represents a type of kelch sequence motif that comprises one beta-sheet blade.; GO: 0005515 protein binding |
| >PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A | Back alignment and domain information |
|---|
Probab=95.43 E-value=1.5 Score=37.45 Aligned_cols=143 Identities=14% Similarity=0.097 Sum_probs=78.2
Q ss_pred EEEEEEecCC--cEEEccCCCcceecCCcceEECCcEEEEEeeCCCCCCCcEEEEEECCCceeee-eCCCCccCCCCceE
Q 017748 175 EVAVFSLRVN--SWRRIQDFPYFWVTGTCSVFVNGALHWTAALNQDADRNDIIIAFDLKSEEFYQ-VPLPPIVGIEGYYI 251 (366)
Q Consensus 175 ~~~vyss~t~--~W~~~~~~~~~~~~~~~~v~~~G~lYw~~~~~~~~~~~~~i~~fD~~~~~~~~-i~lP~~~~~~~~~~ 251 (366)
.+..++..++ .|+.--...... .....+.-+|.+|..... ..+.++|..+++... ..++.... ..
T Consensus 4 ~l~~~d~~tG~~~W~~~~~~~~~~-~~~~~~~~~~~v~~~~~~-------~~l~~~d~~tG~~~W~~~~~~~~~----~~ 71 (238)
T PF13360_consen 4 TLSALDPRTGKELWSYDLGPGIGG-PVATAVPDGGRVYVASGD-------GNLYALDAKTGKVLWRFDLPGPIS----GA 71 (238)
T ss_dssp EEEEEETTTTEEEEEEECSSSCSS-EEETEEEETTEEEEEETT-------SEEEEEETTTSEEEEEEECSSCGG----SG
T ss_pred EEEEEECCCCCEEEEEECCCCCCC-ccceEEEeCCEEEEEcCC-------CEEEEEECCCCCEEEEeecccccc----ce
Confidence 4566776554 587632111110 111133467777777433 389999997765433 34454431 11
Q ss_pred EEEEECCeEEEEEeecCCCCCCcEEEEEeccCCCCCceEE-EEEeccCCCceeeEEEEecCCcEEEEEeeCCeEEEEeCC
Q 017748 252 LLEALGGCLCLLCKFDDDDDDRPWDLWVMKEYGVNDSWTK-LATLLNVGGGNVKPLVYSRSEDKVLLHAVRGDLCWYDLE 330 (366)
Q Consensus 252 ~l~~~~g~L~l~~~~~~~~~~~~l~iW~l~~~~~~~~W~~-~~~i~~~~~~~~~~~~~~~~g~~i~~~~~~~~~~~yd~~ 330 (366)
....++++++... + . .++.++...++..|.. ...-+.... ..+......++.+++...++.++++|++
T Consensus 72 -~~~~~~~v~v~~~--~-----~-~l~~~d~~tG~~~W~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~g~l~~~d~~ 140 (238)
T PF13360_consen 72 -PVVDGGRVYVGTS--D-----G-SLYALDAKTGKVLWSIYLTSSPPAGV--RSSSSPAVDGDRLYVGTSSGKLVALDPK 140 (238)
T ss_dssp -EEEETTEEEEEET--T-----S-EEEEEETTTSCEEEEEEE-SSCTCST--B--SEEEEETTEEEEEETCSEEEEEETT
T ss_pred -eeecccccccccc--e-----e-eeEecccCCcceeeeecccccccccc--ccccCceEecCEEEEEeccCcEEEEecC
Confidence 3666788877662 1 2 5566663223466884 332222221 2222222225578777767789999999
Q ss_pred CCeEEEeeee
Q 017748 331 RHRVRSIVEI 340 (366)
Q Consensus 331 t~~~~~v~~~ 340 (366)
+++..+-+.+
T Consensus 141 tG~~~w~~~~ 150 (238)
T PF13360_consen 141 TGKLLWKYPV 150 (238)
T ss_dssp TTEEEEEEES
T ss_pred CCcEEEEeec
Confidence 9998766455
|
... |
| >PRK11138 outer membrane biogenesis protein BamB; Provisional | Back alignment and domain information |
|---|
Probab=95.05 E-value=3 Score=38.93 Aligned_cols=113 Identities=22% Similarity=0.353 Sum_probs=64.7
Q ss_pred CcceEECCcEEEEEeeCCCCCCCcEEEEEECCCce--eeeeCCCCccCCCCceEEEEEECCeEEEEEeecCCCCCCcEEE
Q 017748 200 TCSVFVNGALHWTAALNQDADRNDIIIAFDLKSEE--FYQVPLPPIVGIEGYYILLEALGGCLCLLCKFDDDDDDRPWDL 277 (366)
Q Consensus 200 ~~~v~~~G~lYw~~~~~~~~~~~~~i~~fD~~~~~--~~~i~lP~~~~~~~~~~~l~~~~g~L~l~~~~~~~~~~~~l~i 277 (366)
..++..+|.+|.....+ .+.++|.++.+ |.. +++.. ..++..+|+||+..... . +
T Consensus 250 ~sP~v~~~~vy~~~~~g-------~l~ald~~tG~~~W~~-~~~~~-------~~~~~~~~~vy~~~~~g------~--l 306 (394)
T PRK11138 250 TTPVVVGGVVYALAYNG-------NLVALDLRSGQIVWKR-EYGSV-------NDFAVDGGRIYLVDQND------R--V 306 (394)
T ss_pred CCcEEECCEEEEEEcCC-------eEEEEECCCCCEEEee-cCCCc-------cCcEEECCEEEEEcCCC------e--E
Confidence 45778899999877544 79999998754 543 22211 12344567777655321 2 2
Q ss_pred EEeccCCCCCceEEEEEeccCCCceeeEEEEecCCcEEEEEeeCCeEEEEeCCCCeEEEeeeec
Q 017748 278 WVMKEYGVNDSWTKLATLLNVGGGNVKPLVYSRSEDKVLLHAVRGDLCWYDLERHRVRSIVEID 341 (366)
Q Consensus 278 W~l~~~~~~~~W~~~~~i~~~~~~~~~~~~~~~~g~~i~~~~~~~~~~~yd~~t~~~~~v~~~~ 341 (366)
..++....+..|..-. +.... ...|... +| .|++...++.++++|.++++..+-.++.
T Consensus 307 ~ald~~tG~~~W~~~~-~~~~~--~~sp~v~--~g-~l~v~~~~G~l~~ld~~tG~~~~~~~~~ 364 (394)
T PRK11138 307 YALDTRGGVELWSQSD-LLHRL--LTAPVLY--NG-YLVVGDSEGYLHWINREDGRFVAQQKVD 364 (394)
T ss_pred EEEECCCCcEEEcccc-cCCCc--ccCCEEE--CC-EEEEEeCCCEEEEEECCCCCEEEEEEcC
Confidence 2233222234464311 11111 1334432 34 8888888888999999999877654554
|
|
| >PF07250 Glyoxal_oxid_N: Glyoxal oxidase N-terminus; InterPro: IPR009880 This entry represents the N terminus (approximately 300 residues) of a number of plant and fungal glyoxal oxidase enzymes | Back alignment and domain information |
|---|
Probab=94.89 E-value=1.2 Score=38.32 Aligned_cols=170 Identities=14% Similarity=0.166 Sum_probs=94.5
Q ss_pred ccEEEEEEecCCcEEEccCCCcceecCCcceEECCcEEEEEeeCCCCCCCcEEEEEECCC----ceeeeeCCCCccCCCC
Q 017748 173 YTEVAVFSLRVNSWRRIQDFPYFWVTGTCSVFVNGALHWTAALNQDADRNDIIIAFDLKS----EEFYQVPLPPIVGIEG 248 (366)
Q Consensus 173 ~~~~~vyss~t~~W~~~~~~~~~~~~~~~~v~~~G~lYw~~~~~~~~~~~~~i~~fD~~~----~~~~~i~lP~~~~~~~ 248 (366)
.....+|+..+++++.+.-....+ ....++.-||.+.-.++...+. ..+-.|++.+ ..|. +.+..+...+
T Consensus 45 ~a~s~~yD~~tn~~rpl~v~td~F-CSgg~~L~dG~ll~tGG~~~G~---~~ir~~~p~~~~~~~~w~--e~~~~m~~~R 118 (243)
T PF07250_consen 45 PAHSVEYDPNTNTFRPLTVQTDTF-CSGGAFLPDGRLLQTGGDNDGN---KAIRIFTPCTSDGTCDWT--ESPNDMQSGR 118 (243)
T ss_pred eEEEEEEecCCCcEEeccCCCCCc-ccCcCCCCCCCEEEeCCCCccc---cceEEEecCCCCCCCCce--ECcccccCCC
Confidence 456789999999999875332222 2233456788888776654432 3577788765 3443 3333343344
Q ss_pred ceEEEEEE-CCeEEEEEeecCCCCCCcEEEEEeccCC-CCCceEEEEEec-cCCCceeeEEEEecCCcEEEEEeeCCeEE
Q 017748 249 YYILLEAL-GGCLCLLCKFDDDDDDRPWDLWVMKEYG-VNDSWTKLATLL-NVGGGNVKPLVYSRSEDKVLLHAVRGDLC 325 (366)
Q Consensus 249 ~~~~l~~~-~g~L~l~~~~~~~~~~~~l~iW~l~~~~-~~~~W~~~~~i~-~~~~~~~~~~~~~~~g~~i~~~~~~~~~~ 325 (366)
+.+....+ +|++.++++.... ..+.|=-.... ....|....... ......+-.+.+..+| +||+..+.. -.
T Consensus 119 WYpT~~~L~DG~vlIvGG~~~~----t~E~~P~~~~~~~~~~~~~l~~~~~~~~~nlYP~~~llPdG-~lFi~an~~-s~ 192 (243)
T PF07250_consen 119 WYPTATTLPDGRVLIVGGSNNP----TYEFWPPKGPGPGPVTLPFLSQTSDTLPNNLYPFVHLLPDG-NLFIFANRG-SI 192 (243)
T ss_pred ccccceECCCCCEEEEeCcCCC----cccccCCccCCCCceeeecchhhhccCccccCceEEEcCCC-CEEEEEcCC-cE
Confidence 66666665 7899999987754 44443221111 111222221111 1111225556677788 777776654 78
Q ss_pred EEeCCCCeE-EEeeeecCcccCeeeeeEEecCcc
Q 017748 326 WYDLERHRV-RSIVEIDDKVRRCDMRTVCVNTLV 358 (366)
Q Consensus 326 ~yd~~t~~~-~~v~~~~~~~~~~~~~~~y~~sl~ 358 (366)
.||.+++++ +.+=.+.| -.+..+..-|-|
T Consensus 193 i~d~~~n~v~~~lP~lPg----~~R~YP~sgssv 222 (243)
T PF07250_consen 193 IYDYKTNTVVRTLPDLPG----GPRNYPASGSSV 222 (243)
T ss_pred EEeCCCCeEEeeCCCCCC----CceecCCCcceE
Confidence 889999977 45423333 244445544444
|
Glyoxal oxidase catalyses the oxidation of aldehydes to carboxylic acids, coupled with reduction of dioxygen to hydrogen peroxide. It is an essential component of the extracellular lignin degradation pathways of the wood-rot fungus Phanerochaete chrysosporium []. |
| >TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL | Back alignment and domain information |
|---|
Probab=94.78 E-value=3.4 Score=38.23 Aligned_cols=115 Identities=16% Similarity=0.101 Sum_probs=64.2
Q ss_pred CcceEECCcEEEEEeeCCCCCCCcEEEEEECCCceeeee-CCCCccCCCCceEEEEEECCeEEEEEeecCCCCCCcEEEE
Q 017748 200 TCSVFVNGALHWTAALNQDADRNDIIIAFDLKSEEFYQV-PLPPIVGIEGYYILLEALGGCLCLLCKFDDDDDDRPWDLW 278 (366)
Q Consensus 200 ~~~v~~~G~lYw~~~~~~~~~~~~~i~~fD~~~~~~~~i-~lP~~~~~~~~~~~l~~~~g~L~l~~~~~~~~~~~~l~iW 278 (366)
..++..+|.+|.....+ .+.++|.++.+.... +.+. ....+..+|.+|+... +. .+..+
T Consensus 235 ~~p~~~~~~vy~~~~~g-------~l~a~d~~tG~~~W~~~~~~-------~~~p~~~~~~vyv~~~-~G-----~l~~~ 294 (377)
T TIGR03300 235 GDPVVDGGQVYAVSYQG-------RVAALDLRSGRVLWKRDASS-------YQGPAVDDNRLYVTDA-DG-----VVVAL 294 (377)
T ss_pred CccEEECCEEEEEEcCC-------EEEEEECCCCcEEEeeccCC-------ccCceEeCCEEEEECC-CC-----eEEEE
Confidence 34667888888876554 799999987543221 2221 1123345666666542 11 34333
Q ss_pred EeccCCCCCceEEEEEeccCCCceeeEEEEecCCcEEEEEeeCCeEEEEeCCCCeEEEeeeecC
Q 017748 279 VMKEYGVNDSWTKLATLLNVGGGNVKPLVYSRSEDKVLLHAVRGDLCWYDLERHRVRSIVEIDD 342 (366)
Q Consensus 279 ~l~~~~~~~~W~~~~~i~~~~~~~~~~~~~~~~g~~i~~~~~~~~~~~yd~~t~~~~~v~~~~~ 342 (366)
..++ ++..|.... +..... ..|.. .++.|++...++.++++|.++++..+-+.+.+
T Consensus 295 d~~t--G~~~W~~~~-~~~~~~--ssp~i---~g~~l~~~~~~G~l~~~d~~tG~~~~~~~~~~ 350 (377)
T TIGR03300 295 DRRS--GSELWKNDE-LKYRQL--TAPAV---VGGYLVVGDFEGYLHWLSREDGSFVARLKTDG 350 (377)
T ss_pred ECCC--CcEEEcccc-ccCCcc--ccCEE---ECCEEEEEeCCCEEEEEECCCCCEEEEEEcCC
Confidence 3332 234465421 111111 33333 23488888878889999999998876546554
|
Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ. |
| >PRK11138 outer membrane biogenesis protein BamB; Provisional | Back alignment and domain information |
|---|
Probab=94.55 E-value=4 Score=38.06 Aligned_cols=190 Identities=9% Similarity=-0.004 Sum_probs=98.6
Q ss_pred eceeEEeecCCccEEEEEeccccceeecCCcCCCCCCCCcceEEEeeecCCCCeEEEEEEEEcCCCCccEEEEEEecCC-
Q 017748 106 CNGLLALEDSRRNIMLLLNPLTKRHRVLPTFYRDLSRCVPSLEGFGFDVGSGDFKLVKILAFGKPMNYTEVAVFSLRVN- 184 (366)
Q Consensus 106 ~~Gll~~~~~~~~~~~V~NP~t~~~~~LP~~~~~~~~~~~~~~~lg~d~~~~~ykvv~~~~~~~~~~~~~~~vyss~t~- 184 (366)
.+|.|.+......++ .+|+.|++.++--..+... .+...+. +. +|+... ....+..++..++
T Consensus 119 ~~~~v~v~~~~g~l~-ald~~tG~~~W~~~~~~~~----~ssP~v~-----~~-~v~v~~------~~g~l~ald~~tG~ 181 (394)
T PRK11138 119 AGGKVYIGSEKGQVY-ALNAEDGEVAWQTKVAGEA----LSRPVVS-----DG-LVLVHT------SNGMLQALNESDGA 181 (394)
T ss_pred ECCEEEEEcCCCEEE-EEECCCCCCcccccCCCce----ecCCEEE-----CC-EEEEEC------CCCEEEEEEccCCC
Confidence 466776665566788 8999998754422211110 0000111 12 222221 1335677777665
Q ss_pred -cEEEccCCCc-ceecCCcceEECCcEEEEEeeCCCCCCCcEEEEEECCCce--eee-eCCCCccCC----CCceEEEEE
Q 017748 185 -SWRRIQDFPY-FWVTGTCSVFVNGALHWTAALNQDADRNDIIIAFDLKSEE--FYQ-VPLPPIVGI----EGYYILLEA 255 (366)
Q Consensus 185 -~W~~~~~~~~-~~~~~~~~v~~~G~lYw~~~~~~~~~~~~~i~~fD~~~~~--~~~-i~lP~~~~~----~~~~~~l~~ 255 (366)
.|+.-...+. .......++..+|.+|+....+ .+.++|.++.+ |+. +..|..... ......-+.
T Consensus 182 ~~W~~~~~~~~~~~~~~~sP~v~~~~v~~~~~~g-------~v~a~d~~~G~~~W~~~~~~~~~~~~~~~~~~~~~sP~v 254 (394)
T PRK11138 182 VKWTVNLDVPSLTLRGESAPATAFGGAIVGGDNG-------RVSAVLMEQGQLIWQQRISQPTGATEIDRLVDVDTTPVV 254 (394)
T ss_pred EeeeecCCCCcccccCCCCCEEECCEEEEEcCCC-------EEEEEEccCChhhheeccccCCCccchhcccccCCCcEE
Confidence 5886433221 1112345677888888765443 79999998764 542 223322100 000112234
Q ss_pred ECCeEEEEEeecCCCCCCcEEEEEeccCCCCCceEEEEEeccCCCceeeEEEEecCCcEEEEEeeCCeEEEEeCCCCeEE
Q 017748 256 LGGCLCLLCKFDDDDDDRPWDLWVMKEYGVNDSWTKLATLLNVGGGNVKPLVYSRSEDKVLLHAVRGDLCWYDLERHRVR 335 (366)
Q Consensus 256 ~~g~L~l~~~~~~~~~~~~l~iW~l~~~~~~~~W~~~~~i~~~~~~~~~~~~~~~~g~~i~~~~~~~~~~~yd~~t~~~~ 335 (366)
.+|.|++.... . . +..++-..++..|.+.. . .. ..+. ..++.||+...+++++++|.++++..
T Consensus 255 ~~~~vy~~~~~-g-----~--l~ald~~tG~~~W~~~~--~--~~--~~~~---~~~~~vy~~~~~g~l~ald~~tG~~~ 317 (394)
T PRK11138 255 VGGVVYALAYN-G-----N--LVALDLRSGQIVWKREY--G--SV--NDFA---VDGGRIYLVDQNDRVYALDTRGGVEL 317 (394)
T ss_pred ECCEEEEEEcC-C-----e--EEEEECCCCCEEEeecC--C--Cc--cCcE---EECCEEEEEcCCCeEEEEECCCCcEE
Confidence 57777775532 1 2 33444332345576531 1 11 1221 23458999888888999999998754
Q ss_pred E
Q 017748 336 S 336 (366)
Q Consensus 336 ~ 336 (366)
+
T Consensus 318 W 318 (394)
T PRK11138 318 W 318 (394)
T ss_pred E
Confidence 4
|
|
| >PF07893 DUF1668: Protein of unknown function (DUF1668); InterPro: IPR012871 The hypothetical proteins found in this family are expressed by Oryza sativa (Rice) and are of unknown function | Back alignment and domain information |
|---|
Probab=94.36 E-value=1.5 Score=40.13 Aligned_cols=132 Identities=14% Similarity=0.087 Sum_probs=76.4
Q ss_pred ceEEEeeeceeEEeecCCccEEEEEeccccceeecCCcCCCCCCCCcceEEEeeecCCCCeEEEEEEEEcCC--CC---c
Q 017748 99 FGFIIGSCNGLLALEDSRRNIMLLLNPLTKRHRVLPTFYRDLSRCVPSLEGFGFDVGSGDFKLVKILAFGKP--MN---Y 173 (366)
Q Consensus 99 ~~~~~~s~~Gll~~~~~~~~~~~V~NP~t~~~~~LP~~~~~~~~~~~~~~~lg~d~~~~~ykvv~~~~~~~~--~~---~ 173 (366)
.+.+.+..+.-|+..+.....+ |+++.|+....+|.+..+... .+.+.. .+ +|.++...... .. .
T Consensus 68 ~~~F~al~gskIv~~d~~~~t~-vyDt~t~av~~~P~l~~pk~~----pisv~V---G~--~LY~m~~~~~~~~~~~~~~ 137 (342)
T PF07893_consen 68 SMDFFALHGSKIVAVDQSGRTL-VYDTDTRAVATGPRLHSPKRC----PISVSV---GD--KLYAMDRSPFPEPAGRPDF 137 (342)
T ss_pred eeEEEEecCCeEEEEcCCCCeE-EEECCCCeEeccCCCCCCCcc----eEEEEe---CC--eEEEeeccCccccccCccc
Confidence 3445555455554444446677 999999999999987654321 122221 12 25555332211 11 0
Q ss_pred cEEEEE--E--------ecCCcEEEccCCCcceec------CCcceEECCcEEEEEeeCCCCCCCcEEEEEECCCceeee
Q 017748 174 TEVAVF--S--------LRVNSWRRIQDFPYFWVT------GTCSVFVNGALHWTAALNQDADRNDIIIAFDLKSEEFYQ 237 (366)
Q Consensus 174 ~~~~vy--s--------s~t~~W~~~~~~~~~~~~------~~~~v~~~G~lYw~~~~~~~~~~~~~i~~fD~~~~~~~~ 237 (366)
..+|++ + .++-+|+.++.+|+.... -.+-++++|.--|+...+.. ..-.+||+++.+|+.
T Consensus 138 ~~FE~l~~~~~~~~~~~~~~w~W~~LP~PPf~~~~~~~~~~i~sYavv~g~~I~vS~~~~~----~GTysfDt~~~~W~~ 213 (342)
T PF07893_consen 138 PCFEALVYRPPPDDPSPEESWSWRSLPPPPFVRDRRYSDYRITSYAVVDGRTIFVSVNGRR----WGTYSFDTESHEWRK 213 (342)
T ss_pred eeEEEeccccccccccCCCcceEEcCCCCCccccCCcccceEEEEEEecCCeEEEEecCCc----eEEEEEEcCCcceee
Confidence 144554 3 123478888877754431 12223338888888665411 269999999999988
Q ss_pred e---CCCCcc
Q 017748 238 V---PLPPIV 244 (366)
Q Consensus 238 i---~lP~~~ 244 (366)
. .||-..
T Consensus 214 ~GdW~LPF~G 223 (342)
T PF07893_consen 214 HGDWMLPFHG 223 (342)
T ss_pred ccceecCcCC
Confidence 7 788754
|
|
| >smart00612 Kelch Kelch domain | Back alignment and domain information |
|---|
Probab=94.24 E-value=0.078 Score=32.22 Aligned_cols=24 Identities=21% Similarity=0.457 Sum_probs=20.3
Q ss_pred ccEEEEEEecCCcEEEccCCCcce
Q 017748 173 YTEVAVFSLRVNSWRRIQDFPYFW 196 (366)
Q Consensus 173 ~~~~~vyss~t~~W~~~~~~~~~~ 196 (366)
...+++|+.++++|+..+.++...
T Consensus 14 ~~~v~~yd~~~~~W~~~~~~~~~r 37 (47)
T smart00612 14 LKSVEVYDPETNKWTPLPSMPTPR 37 (47)
T ss_pred eeeEEEECCCCCeEccCCCCCCcc
Confidence 567899999999999998887654
|
|
| >PF07893 DUF1668: Protein of unknown function (DUF1668); InterPro: IPR012871 The hypothetical proteins found in this family are expressed by Oryza sativa (Rice) and are of unknown function | Back alignment and domain information |
|---|
Probab=94.04 E-value=2 Score=39.32 Aligned_cols=109 Identities=11% Similarity=0.103 Sum_probs=62.9
Q ss_pred EEEEEECCCceeeeeCCCCccCCCCceEEEEEECCeEEEEEeecCCCCCC-----cEEEEEecc----CCCCCceEEEEE
Q 017748 224 IIIAFDLKSEEFYQVPLPPIVGIEGYYILLEALGGCLCLLCKFDDDDDDR-----PWDLWVMKE----YGVNDSWTKLAT 294 (366)
Q Consensus 224 ~i~~fD~~~~~~~~i~lP~~~~~~~~~~~l~~~~g~L~l~~~~~~~~~~~-----~l~iW~l~~----~~~~~~W~~~~~ 294 (366)
..+.||.++...... |.-.... .....+..+|+||+........... .+++-.... ......|.=..
T Consensus 87 ~t~vyDt~t~av~~~--P~l~~pk-~~pisv~VG~~LY~m~~~~~~~~~~~~~~~~FE~l~~~~~~~~~~~~~~w~W~~- 162 (342)
T PF07893_consen 87 RTLVYDTDTRAVATG--PRLHSPK-RCPISVSVGDKLYAMDRSPFPEPAGRPDFPCFEALVYRPPPDDPSPEESWSWRS- 162 (342)
T ss_pred CeEEEECCCCeEecc--CCCCCCC-cceEEEEeCCeEEEeeccCccccccCccceeEEEeccccccccccCCCcceEEc-
Confidence 599999999887754 3322111 2344555688999988765421111 333432221 11223344322
Q ss_pred eccCCCc----e----eeEEEEecCCcEEEEEeeCC--eEEEEeCCCCeEEEe
Q 017748 295 LLNVGGG----N----VKPLVYSRSEDKVLLHAVRG--DLCWYDLERHRVRSI 337 (366)
Q Consensus 295 i~~~~~~----~----~~~~~~~~~g~~i~~~~~~~--~~~~yd~~t~~~~~v 337 (366)
+|...+. . ..-.+++ +|..|++...+. ..++||.++.+|+++
T Consensus 163 LP~PPf~~~~~~~~~~i~sYavv-~g~~I~vS~~~~~~GTysfDt~~~~W~~~ 214 (342)
T PF07893_consen 163 LPPPPFVRDRRYSDYRITSYAVV-DGRTIFVSVNGRRWGTYSFDTESHEWRKH 214 (342)
T ss_pred CCCCCccccCCcccceEEEEEEe-cCCeEEEEecCCceEEEEEEcCCcceeec
Confidence 4433331 0 3334566 677899977654 699999999999998
|
|
| >PF13418 Kelch_4: Galactose oxidase, central domain; PDB: 2UVK_B | Back alignment and domain information |
|---|
Probab=93.66 E-value=0.1 Score=32.40 Aligned_cols=40 Identities=10% Similarity=0.297 Sum_probs=24.2
Q ss_pred ceEE-CCcEEEEEeeCCCCCCCcEEEEEECCCceeeee-CCC
Q 017748 202 SVFV-NGALHWTAALNQDADRNDIIIAFDLKSEEFYQV-PLP 241 (366)
Q Consensus 202 ~v~~-~G~lYw~~~~~~~~~~~~~i~~fD~~~~~~~~i-~lP 241 (366)
++.+ ++.+|..++..........+..||+++++|+.+ ++|
T Consensus 7 ~~~~~~~~i~v~GG~~~~~~~~~d~~~~d~~~~~W~~~~~~P 48 (49)
T PF13418_consen 7 AVSIGDNSIYVFGGRDSSGSPLNDLWIFDIETNTWTRLPSMP 48 (49)
T ss_dssp EEEE-TTEEEEE--EEE-TEE---EEEEETTTTEEEE--SS-
T ss_pred EEEEeCCeEEEECCCCCCCcccCCEEEEECCCCEEEECCCCC
Confidence 4556 588888887664332334789999999999998 444
|
|
| >KOG0310 consensus Conserved WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=93.47 E-value=3.3 Score=38.46 Aligned_cols=193 Identities=15% Similarity=0.141 Sum_probs=106.0
Q ss_pred eccccceeecCCcCCCCCCCCcceEEEeeecCCCCeEEEEEEEEcCCCCccEEEEEEecCCcEEE-ccCCCcceecCCcc
Q 017748 124 NPLTKRHRVLPTFYRDLSRCVPSLEGFGFDVGSGDFKLVKILAFGKPMNYTEVAVFSLRVNSWRR-IQDFPYFWVTGTCS 202 (366)
Q Consensus 124 NP~t~~~~~LP~~~~~~~~~~~~~~~lg~d~~~~~ykvv~~~~~~~~~~~~~~~vyss~t~~W~~-~~~~~~~~~~~~~~ 202 (366)
+|-++.|...-.++.... ..+...+.|.|.. .|-++... ...+++|++.+.+=+. +...... ...-.
T Consensus 8 t~e~~~w~~~~~~~~~ke--~~~vssl~fsp~~-P~d~aVt~-------S~rvqly~~~~~~~~k~~srFk~~--v~s~~ 75 (487)
T KOG0310|consen 8 TPEIRYWRQETFPPVHKE--HNSVSSLCFSPKH-PYDFAVTS-------SVRVQLYSSVTRSVRKTFSRFKDV--VYSVD 75 (487)
T ss_pred Cccchhhhhhcccccccc--cCcceeEecCCCC-CCceEEec-------ccEEEEEecchhhhhhhHHhhccc--eeEEE
Confidence 555666666544433222 2345567776752 23333322 5579999998765432 2222111 11112
Q ss_pred eEECCcEEEEEeeCCCCCCCcEEEEEECCCcee-eee---CCCCccCCCCceEEEEEECCeEEEEEeecCCCCCCcEEEE
Q 017748 203 VFVNGALHWTAALNQDADRNDIIIAFDLKSEEF-YQV---PLPPIVGIEGYYILLEALGGCLCLLCKFDDDDDDRPWDLW 278 (366)
Q Consensus 203 v~~~G~lYw~~~~~~~~~~~~~i~~fD~~~~~~-~~i---~lP~~~~~~~~~~~l~~~~g~L~l~~~~~~~~~~~~l~iW 278 (366)
...||.+...++.. ..|-.||..+... +.+ +.|... ......++.+.+.+..+. ...+|
T Consensus 76 fR~DG~LlaaGD~s------G~V~vfD~k~r~iLR~~~ah~apv~~------~~f~~~d~t~l~s~sDd~-----v~k~~ 138 (487)
T KOG0310|consen 76 FRSDGRLLAAGDES------GHVKVFDMKSRVILRQLYAHQAPVHV------TKFSPQDNTMLVSGSDDK-----VVKYW 138 (487)
T ss_pred eecCCeEEEccCCc------CcEEEeccccHHHHHHHhhccCceeE------EEecccCCeEEEecCCCc-----eEEEE
Confidence 34569998887765 3799999665322 222 233322 223334555555444433 78889
Q ss_pred EeccCCCCCceEEEEEecc-CCCceeeEEEEecCCcEEEEEe-eCCeEEEEeCCCCeEEEeeeecCcccCeeeeeEEecC
Q 017748 279 VMKEYGVNDSWTKLATLLN-VGGGNVKPLVYSRSEDKVLLHA-VRGDLCWYDLERHRVRSIVEIDDKVRRCDMRTVCVNT 356 (366)
Q Consensus 279 ~l~~~~~~~~W~~~~~i~~-~~~~~~~~~~~~~~g~~i~~~~-~~~~~~~yd~~t~~~~~v~~~~~~~~~~~~~~~y~~s 356 (366)
.+... . + ...+.- .. ..+-..+....+.|++.. .|+.+-.||.++.+ .+++++.. +..-..++|.+|
T Consensus 139 d~s~a---~--v-~~~l~~htD--YVR~g~~~~~~~hivvtGsYDg~vrl~DtR~~~-~~v~elnh--g~pVe~vl~lps 207 (487)
T KOG0310|consen 139 DLSTA---Y--V-QAELSGHTD--YVRCGDISPANDHIVVTGSYDGKVRLWDTRSLT-SRVVELNH--GCPVESVLALPS 207 (487)
T ss_pred EcCCc---E--E-EEEecCCcc--eeEeeccccCCCeEEEecCCCceEEEEEeccCC-ceeEEecC--CCceeeEEEcCC
Confidence 88762 1 2 333322 12 244455555555677764 56779999999998 66657762 355666666666
|
|
| >PF13964 Kelch_6: Kelch motif | Back alignment and domain information |
|---|
Probab=93.12 E-value=0.15 Score=31.73 Aligned_cols=23 Identities=17% Similarity=0.273 Sum_probs=19.3
Q ss_pred CccEEEEEeccccceeecCCcCCC
Q 017748 116 RRNIMLLLNPLTKRHRVLPTFYRD 139 (366)
Q Consensus 116 ~~~~~~V~NP~t~~~~~LP~~~~~ 139 (366)
...+. ++||.|++|..+|+++.+
T Consensus 27 ~~~v~-~yd~~t~~W~~~~~mp~p 49 (50)
T PF13964_consen 27 SNDVE-RYDPETNTWEQLPPMPTP 49 (50)
T ss_pred cccEE-EEcCCCCcEEECCCCCCC
Confidence 35577 999999999999998754
|
|
| >TIGR01640 F_box_assoc_1 F-box protein interaction domain | Back alignment and domain information |
|---|
Probab=92.70 E-value=4.8 Score=34.33 Aligned_cols=122 Identities=9% Similarity=0.072 Sum_probs=67.2
Q ss_pred EECCcEEEEEeeCCCCCCCcEEEEEECCCceeeeeCCCCccC--CCCceEEEEEEC--C--eEEEEEeecCCCCCCcEEE
Q 017748 204 FVNGALHWTAALNQDADRNDIIIAFDLKSEEFYQVPLPPIVG--IEGYYILLEALG--G--CLCLLCKFDDDDDDRPWDL 277 (366)
Q Consensus 204 ~~~G~lYw~~~~~~~~~~~~~i~~fD~~~~~~~~i~lP~~~~--~~~~~~~l~~~~--g--~L~l~~~~~~~~~~~~l~i 277 (366)
.+||.+ .+... ..++..|+.|+++..++.|.... .......++... + ++..+............+|
T Consensus 3 sCnGLl-c~~~~-------~~~~V~NP~T~~~~~LP~~~~~~~~~~~~~~~~G~d~~~~~YKVv~~~~~~~~~~~~~~~V 74 (230)
T TIGR01640 3 PCDGLI-CFSYG-------KRLVVWNPSTGQSRWLPTPKSRRSNKESDTYFLGYDPIEKQYKVLCFSDRSGNRNQSEHQV 74 (230)
T ss_pred ccceEE-EEecC-------CcEEEECCCCCCEEecCCCCCcccccccceEEEeecccCCcEEEEEEEeecCCCCCccEEE
Confidence 368888 44432 26999999999999997665420 111112222211 2 3333322211112236677
Q ss_pred EEeccCCCCCceEEEEEeccCCCceeeEEEEecCCcEEEEEeeCC------eEEEEeCCCCeEEE-eeeec
Q 017748 278 WVMKEYGVNDSWTKLATLLNVGGGNVKPLVYSRSEDKVLLHAVRG------DLCWYDLERHRVRS-IVEID 341 (366)
Q Consensus 278 W~l~~~~~~~~W~~~~~i~~~~~~~~~~~~~~~~g~~i~~~~~~~------~~~~yd~~t~~~~~-v~~~~ 341 (366)
+.+.. ++|..+...+.... ..+. ++.-+| .+++..... .+++||+++.+++. + .++
T Consensus 75 ys~~~----~~Wr~~~~~~~~~~-~~~~-~v~~~G-~lyw~~~~~~~~~~~~IvsFDl~~E~f~~~i-~~P 137 (230)
T TIGR01640 75 YTLGS----NSWRTIECSPPHHP-LKSR-GVCING-VLYYLAYTLKTNPDYFIVSFDVSSERFKEFI-PLP 137 (230)
T ss_pred EEeCC----CCccccccCCCCcc-ccCC-eEEECC-EEEEEEEECCCCCcEEEEEEEcccceEeeee-ecC
Confidence 77765 47998763222111 1222 555566 677764321 59999999999995 6 554
|
This model describes a large family of plant domains, with several hundred members in Arabidopsis thaliana. Most examples are found C-terminal to an F-box (pfam00646), a 60 amino acid motif involved in ubiquitination of target proteins to mark them for degradation. Two-hybid experiments support the idea that most members are interchangeable F-box subunits of SCF E3 complexes. Some members have two copies of this domain. |
| >TIGR03074 PQQ_membr_DH membrane-bound PQQ-dependent dehydrogenase, glucose/quinate/shikimate family | Back alignment and domain information |
|---|
Probab=92.45 E-value=2.8 Score=42.56 Aligned_cols=126 Identities=17% Similarity=-0.003 Sum_probs=68.7
Q ss_pred cCCcceEECCcEEEEEeeCCCCCCCcEEEEEECCC--ceeeee-CCCCcc-----C-----------------------C
Q 017748 198 TGTCSVFVNGALHWTAALNQDADRNDIIIAFDLKS--EEFYQV-PLPPIV-----G-----------------------I 246 (366)
Q Consensus 198 ~~~~~v~~~G~lYw~~~~~~~~~~~~~i~~fD~~~--~~~~~i-~lP~~~-----~-----------------------~ 246 (366)
....++.++|++|..+..+ .++++|.++ +.|+.- ..+... . .
T Consensus 186 ~e~TPlvvgg~lYv~t~~~-------~V~ALDa~TGk~lW~~d~~~~~~~~~~~~~cRGvay~~~p~~~~~~~~~~~p~~ 258 (764)
T TIGR03074 186 FQATPLKVGDTLYLCTPHN-------KVIALDAATGKEKWKFDPKLKTEAGRQHQTCRGVSYYDAPAAAAGPAAPAAPAD 258 (764)
T ss_pred cccCCEEECCEEEEECCCC-------eEEEEECCCCcEEEEEcCCCCcccccccccccceEEecCCcccccccccccccc
Confidence 3456899999999987654 799999986 456542 333210 0 0
Q ss_pred CCceEEEEEECCeEEEEEeecCCCCCCcEEEEEeccCCCCCceEEE-EEeccCCCce-eeEEEEecCCcEEEEEee----
Q 017748 247 EGYYILLEALGGCLCLLCKFDDDDDDRPWDLWVMKEYGVNDSWTKL-ATLLNVGGGN-VKPLVYSRSEDKVLLHAV---- 320 (366)
Q Consensus 247 ~~~~~~l~~~~g~L~l~~~~~~~~~~~~l~iW~l~~~~~~~~W~~~-~~i~~~~~~~-~~~~~~~~~g~~i~~~~~---- 320 (366)
....+.+...+|+|+.+.... .-.+|.+...+. ..|.+- ...+...... ..|+.+ ++.|++...
T Consensus 259 ~~~rV~~~T~Dg~LiALDA~T------Gk~~W~fg~~G~-vdl~~~~g~~~~g~~~~ts~P~V~---~g~VIvG~~v~d~ 328 (764)
T TIGR03074 259 CARRIILPTSDARLIALDADT------GKLCEDFGNNGT-VDLTAGMGTTPPGYYYPTSPPLVA---GTTVVIGGRVADN 328 (764)
T ss_pred cCCEEEEecCCCeEEEEECCC------CCEEEEecCCCc-eeeecccCcCCCcccccccCCEEE---CCEEEEEeccccc
Confidence 111333444556666555543 345677665432 224431 1111111111 223333 236776532
Q ss_pred ------CCeEEEEeCCCCeEEEeeee
Q 017748 321 ------RGDLCWYDLERHRVRSIVEI 340 (366)
Q Consensus 321 ------~~~~~~yd~~t~~~~~v~~~ 340 (366)
++.+.+||.+|++..+-.+.
T Consensus 329 ~~~~~~~G~I~A~Da~TGkl~W~~~~ 354 (764)
T TIGR03074 329 YSTDEPSGVIRAFDVNTGALVWAWDP 354 (764)
T ss_pred ccccCCCcEEEEEECCCCcEeeEEec
Confidence 35699999999998887554
|
This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Members of this family have several predicted transmembrane helices in the N-terminal region, and include the quinoprotein glucose dehydrogenase (EC 1.1.5.2) of Escherichia coli and the quinate/shikimate dehydrogenase of Acinetobacter sp. ADP1 (EC 1.1.99.25). Sequences closely related except for the absense of the N-terminal hydrophobic region, scoring in the gray zone between the trusted and noise cutoffs, include PQQ-dependent glycerol (EC 1.1.99.22) and and other polyol (sugar alcohol) dehydrogenases. |
| >TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL | Back alignment and domain information |
|---|
Probab=92.44 E-value=8.9 Score=35.42 Aligned_cols=190 Identities=13% Similarity=0.089 Sum_probs=94.8
Q ss_pred eceeEEeecCCccEEEEEeccccceeecCCcCCCCCCCCcceEEEeeecCCCCeEEEEEEEEcCCCCccEEEEEEecCC-
Q 017748 106 CNGLLALEDSRRNIMLLLNPLTKRHRVLPTFYRDLSRCVPSLEGFGFDVGSGDFKLVKILAFGKPMNYTEVAVFSLRVN- 184 (366)
Q Consensus 106 ~~Gll~~~~~~~~~~~V~NP~t~~~~~LP~~~~~~~~~~~~~~~lg~d~~~~~ykvv~~~~~~~~~~~~~~~vyss~t~- 184 (366)
.+|.+.+......++ .+|+.|++.++--...... .....+ .++ +|+... ....+..++..++
T Consensus 104 ~~~~v~v~~~~g~l~-ald~~tG~~~W~~~~~~~~----~~~p~v-----~~~-~v~v~~------~~g~l~a~d~~tG~ 166 (377)
T TIGR03300 104 DGGLVFVGTEKGEVI-ALDAEDGKELWRAKLSSEV----LSPPLV-----ANG-LVVVRT------NDGRLTALDAATGE 166 (377)
T ss_pred cCCEEEEEcCCCEEE-EEECCCCcEeeeeccCcee----ecCCEE-----ECC-EEEEEC------CCCeEEEEEcCCCc
Confidence 466666665556677 8888887754421111110 000001 112 233221 1334667776554
Q ss_pred -cEEEccCCCc-ceecCCcceEECCcEEEEEeeCCCCCCCcEEEEEECCCc--eeee-eCCCCccCC----CCceEEEEE
Q 017748 185 -SWRRIQDFPY-FWVTGTCSVFVNGALHWTAALNQDADRNDIIIAFDLKSE--EFYQ-VPLPPIVGI----EGYYILLEA 255 (366)
Q Consensus 185 -~W~~~~~~~~-~~~~~~~~v~~~G~lYw~~~~~~~~~~~~~i~~fD~~~~--~~~~-i~lP~~~~~----~~~~~~l~~ 255 (366)
.|+.-...+. .......++..+|.+|.-...+ .+.++|++++ .|+. +..|..... .........
T Consensus 167 ~~W~~~~~~~~~~~~~~~sp~~~~~~v~~~~~~g-------~v~ald~~tG~~~W~~~~~~~~g~~~~~~~~~~~~~p~~ 239 (377)
T TIGR03300 167 RLWTYSRVTPALTLRGSASPVIADGGVLVGFAGG-------KLVALDLQTGQPLWEQRVALPKGRTELERLVDVDGDPVV 239 (377)
T ss_pred eeeEEccCCCceeecCCCCCEEECCEEEEECCCC-------EEEEEEccCCCEeeeeccccCCCCCchhhhhccCCccEE
Confidence 5875432221 1112344677888776544332 7999999875 4532 223321100 000112233
Q ss_pred ECCeEEEEEeecCCCCCCcEEEEEeccCCCCCceEEEEEeccCCCceeeEEEEecCCcEEEEEeeCCeEEEEeCCCCeEE
Q 017748 256 LGGCLCLLCKFDDDDDDRPWDLWVMKEYGVNDSWTKLATLLNVGGGNVKPLVYSRSEDKVLLHAVRGDLCWYDLERHRVR 335 (366)
Q Consensus 256 ~~g~L~l~~~~~~~~~~~~l~iW~l~~~~~~~~W~~~~~i~~~~~~~~~~~~~~~~g~~i~~~~~~~~~~~yd~~t~~~~ 335 (366)
.+|.+++... .. .+..+..+. .+..|.... ... ..|. + .++.|++...++.++++|..+++..
T Consensus 240 ~~~~vy~~~~-~g-----~l~a~d~~t--G~~~W~~~~----~~~--~~p~-~--~~~~vyv~~~~G~l~~~d~~tG~~~ 302 (377)
T TIGR03300 240 DGGQVYAVSY-QG-----RVAALDLRS--GRVLWKRDA----SSY--QGPA-V--DDNRLYVTDADGVVVALDRRSGSEL 302 (377)
T ss_pred ECCEEEEEEc-CC-----EEEEEECCC--CcEEEeecc----CCc--cCce-E--eCCEEEEECCCCeEEEEECCCCcEE
Confidence 4666666543 22 444444443 234576531 111 2222 2 3448888887888999999998754
Q ss_pred E
Q 017748 336 S 336 (366)
Q Consensus 336 ~ 336 (366)
+
T Consensus 303 W 303 (377)
T TIGR03300 303 W 303 (377)
T ss_pred E
Confidence 4
|
Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ. |
| >PF01344 Kelch_1: Kelch motif; InterPro: IPR006652 Kelch is a 50-residue motif, named after the Drosophila mutant in which it was first identified [] | Back alignment and domain information |
|---|
Probab=92.43 E-value=0.25 Score=30.13 Aligned_cols=24 Identities=21% Similarity=0.527 Sum_probs=20.7
Q ss_pred CCCccEEEEEEecCCcEEEccCCC
Q 017748 170 PMNYTEVAVFSLRVNSWRRIQDFP 193 (366)
Q Consensus 170 ~~~~~~~~vyss~t~~W~~~~~~~ 193 (366)
......+++|+..+++|+.+++||
T Consensus 24 ~~~~~~v~~yd~~~~~W~~~~~mp 47 (47)
T PF01344_consen 24 NQPTNSVEVYDPETNTWEELPPMP 47 (47)
T ss_dssp SSBEEEEEEEETTTTEEEEEEEES
T ss_pred CceeeeEEEEeCCCCEEEEcCCCC
Confidence 456779999999999999988775
|
This sequence motif represents one beta-sheet blade, and several of these repeats can associate to form a beta-propeller. For instance, the motif appears 6 times in Drosophila egg-chamber regulatory protein, creating a 6-bladed beta-propeller. The motif is also found in mouse protein MIPP [] and in a number of poxviruses. In addition, kelch repeats have been recognised in alpha- and beta-scruin [, ], and in galactose oxidase from the fungus Dactylium dendroides [, ]. The structure of galactose oxidase reveals that the repeated sequence corresponds to a 4-stranded anti-parallel beta-sheet motif that forms the repeat unit in a super-barrel structural fold []. The known functions of kelch-containing proteins are diverse: scruin is an actin cross-linking protein; galactose oxidase catalyses the oxidation of the hydroxyl group at the C6 position in D-galactose; neuraminidase hydrolyses sialic acid residues from glycoproteins; and kelch may have a cytoskeletal function, as it is localised to the actin-rich ring canals that connect the 15 nurse cells to the developing oocyte in Drosophila []. Nevertheless, based on the location of the kelch pattern in the catalytic unit in galactose oxidase, functionally important residues have been predicted in glyoxal oxidase []. This entry represents a type of kelch sequence motif that comprises one beta-sheet blade.; GO: 0005515 protein binding; PDB: 2XN4_A 2WOZ_A 3II7_A 4ASC_A 1U6D_X 1ZGK_A 2FLU_X 2VPJ_A 2DYH_A 1X2R_A .... |
| >smart00612 Kelch Kelch domain | Back alignment and domain information |
|---|
Probab=92.21 E-value=0.48 Score=28.58 Aligned_cols=35 Identities=9% Similarity=0.253 Sum_probs=23.1
Q ss_pred EEEEEeeCCCCCCCcEEEEEECCCceeeee-CCCCcc
Q 017748 209 LHWTAALNQDADRNDIIIAFDLKSEEFYQV-PLPPIV 244 (366)
Q Consensus 209 lYw~~~~~~~~~~~~~i~~fD~~~~~~~~i-~lP~~~ 244 (366)
+|.+++... ......+.+||+++++|+.+ ++|...
T Consensus 2 iyv~GG~~~-~~~~~~v~~yd~~~~~W~~~~~~~~~r 37 (47)
T smart00612 2 IYVVGGFDG-GQRLKSVEVYDPETNKWTPLPSMPTPR 37 (47)
T ss_pred EEEEeCCCC-CceeeeEEEECCCCCeEccCCCCCCcc
Confidence 455554432 12234789999999999887 666554
|
|
| >PLN02772 guanylate kinase | Back alignment and domain information |
|---|
Probab=92.17 E-value=0.92 Score=41.81 Aligned_cols=78 Identities=9% Similarity=0.003 Sum_probs=54.4
Q ss_pred CCcceEECCcEEEEEeeCCCCCCCcEEEEEECCCceeeeeC----CCCccCCCCceEEEEEECCeEEEEEeecCCCCCCc
Q 017748 199 GTCSVFVNGALHWTAALNQDADRNDIIIAFDLKSEEFYQVP----LPPIVGIEGYYILLEALGGCLCLLCKFDDDDDDRP 274 (366)
Q Consensus 199 ~~~~v~~~G~lYw~~~~~~~~~~~~~i~~fD~~~~~~~~i~----lP~~~~~~~~~~~l~~~~g~L~l~~~~~~~~~~~~ 274 (366)
...++.++.++|.+++..+.......+.+||..+.+|.... .|... + .+..+..-+++|.++...... .
T Consensus 27 ~~tav~igdk~yv~GG~~d~~~~~~~v~i~D~~t~~W~~P~V~G~~P~~r--~-GhSa~v~~~~rilv~~~~~~~----~ 99 (398)
T PLN02772 27 RETSVTIGDKTYVIGGNHEGNTLSIGVQILDKITNNWVSPIVLGTGPKPC--K-GYSAVVLNKDRILVIKKGSAP----D 99 (398)
T ss_pred cceeEEECCEEEEEcccCCCccccceEEEEECCCCcEecccccCCCCCCC--C-cceEEEECCceEEEEeCCCCC----c
Confidence 35588999999999986654323468999999999997652 33332 1 244445557899998876554 4
Q ss_pred EEEEEeccC
Q 017748 275 WDLWVMKEY 283 (366)
Q Consensus 275 l~iW~l~~~ 283 (366)
=++|.|+-.
T Consensus 100 ~~~w~l~~~ 108 (398)
T PLN02772 100 DSIWFLEVD 108 (398)
T ss_pred cceEEEEcC
Confidence 678988753
|
|
| >PF07762 DUF1618: Protein of unknown function (DUF1618); InterPro: IPR011676 The proteins of this entry are mainly hypothetical proteins expressed by Oryza sativa | Back alignment and domain information |
|---|
Probab=92.17 E-value=1.2 Score=34.34 Aligned_cols=77 Identities=19% Similarity=0.198 Sum_probs=55.6
Q ss_pred EEEEEECCCc--eeeeeCCCCccC----C------CCceEEEEEECCeEEEEEeecCC-----CCCCcEEEEEeccC-CC
Q 017748 224 IIIAFDLKSE--EFYQVPLPPIVG----I------EGYYILLEALGGCLCLLCKFDDD-----DDDRPWDLWVMKEY-GV 285 (366)
Q Consensus 224 ~i~~fD~~~~--~~~~i~lP~~~~----~------~~~~~~l~~~~g~L~l~~~~~~~-----~~~~~l~iW~l~~~-~~ 285 (366)
.|+.+|+-.+ .++.++||.... . ......+++.+|+|-++...... .....+.+|.|... +.
T Consensus 7 GIL~CD~~~~~p~l~~vpLP~~~~~~~~~~~~~~~~~~~R~v~v~~G~ikfV~i~~~~~~~~~~~~~~vt~Wtl~~~~~~ 86 (131)
T PF07762_consen 7 GILFCDVFDDSPVLRFVPLPPPCPPNRRDDRPRGSPESYRDVGVSGGKIKFVEIDGYEDDGPPSGGWTVTTWTLKDPEGS 86 (131)
T ss_pred CEEEEECCCCCccEEEEeCCCccccCcccccccCCchhCceEEecCCCEEEEEEecccCCCcccCCcEEEEEEeccCCCC
Confidence 5888999865 667788887651 1 12345788899999998886542 24557899999985 23
Q ss_pred CCceEEEEEeccCCC
Q 017748 286 NDSWTKLATLLNVGG 300 (366)
Q Consensus 286 ~~~W~~~~~i~~~~~ 300 (366)
..+|.+-+++....+
T Consensus 87 ~~~W~~d~~v~~~di 101 (131)
T PF07762_consen 87 SWEWKKDCEVDLSDI 101 (131)
T ss_pred CCCEEEeEEEEhhhc
Confidence 567999998887554
|
|
| >PF07646 Kelch_2: Kelch motif; InterPro: IPR011498 Kelch is a 50-residue motif, named after the Drosophila mutant in which it was first identified [] | Back alignment and domain information |
|---|
Probab=91.08 E-value=0.59 Score=28.90 Aligned_cols=43 Identities=21% Similarity=0.506 Sum_probs=30.5
Q ss_pred EEEEEECCeEEEEEee-cCCCCCCcEEEEEeccCCCCCceEEEEEe
Q 017748 251 ILLEALGGCLCLLCKF-DDDDDDRPWDLWVMKEYGVNDSWTKLATL 295 (366)
Q Consensus 251 ~~l~~~~g~L~l~~~~-~~~~~~~~l~iW~l~~~~~~~~W~~~~~i 295 (366)
...++.+++|++++.. ........-++|.++.. +.+|.++..+
T Consensus 5 hs~~~~~~kiyv~GG~~~~~~~~~~~~v~~~d~~--t~~W~~~~~~ 48 (49)
T PF07646_consen 5 HSAVVLDGKIYVFGGYGTDNGGSSSNDVWVFDTE--TNQWTELSPM 48 (49)
T ss_pred eEEEEECCEEEEECCcccCCCCcccceeEEEECC--CCEEeecCCC
Confidence 3456789999999998 22233446788888873 4789987654
|
This sequence motif represents one beta-sheet blade, and several of these repeats can associate to form a beta-propeller. For instance, the motif appears 6 times in Drosophila egg-chamber regulatory protein, creating a 6-bladed beta-propeller. The motif is also found in mouse protein MIPP [] and in a number of poxviruses. In addition, kelch repeats have been recognised in alpha- and beta-scruin [, ], and in galactose oxidase from the fungus Dactylium dendroides [, ]. The structure of galactose oxidase reveals that the repeated sequence corresponds to a 4-stranded anti-parallel beta-sheet motif that forms the repeat unit in a super-barrel structural fold []. The known functions of kelch-containing proteins are diverse: scruin is an actin cross-linking protein; galactose oxidase catalyses the oxidation of the hydroxyl group at the C6 position in D-galactose; neuraminidase hydrolyses sialic acid residues from glycoproteins; and kelch may have a cytoskeletal function, as it is localised to the actin-rich ring canals that connect the 15 nurse cells to the developing oocyte in Drosophila []. Nevertheless, based on the location of the kelch pattern in the catalytic unit in galactose oxidase, functionally important residues have been predicted in glyoxal oxidase []. This entry represents a type of kelch sequence motif that comprises one beta-sheet blade.; GO: 0005515 protein binding |
| >PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3 | Back alignment and domain information |
|---|
Probab=90.91 E-value=13 Score=34.08 Aligned_cols=189 Identities=16% Similarity=0.201 Sum_probs=100.8
Q ss_pred EEeccccceeecCCcCCCCCCCCcceEEEeeecCCCCeEEEEEEEEcCCCCccEEEEEEecCC-cEEEccCC-------C
Q 017748 122 LLNPLTKRHRVLPTFYRDLSRCVPSLEGFGFDVGSGDFKLVKILAFGKPMNYTEVAVFSLRVN-SWRRIQDF-------P 193 (366)
Q Consensus 122 V~NP~t~~~~~LP~~~~~~~~~~~~~~~lg~d~~~~~ykvv~~~~~~~~~~~~~~~vyss~t~-~W~~~~~~-------~ 193 (366)
-+++.+++...+-..+.. ....+.+..++. +.|-+++-.. ...+.+|+..+. +=...... |
T Consensus 68 ~i~~~~g~L~~~~~~~~~----g~~p~~i~~~~~-g~~l~vany~------~g~v~v~~l~~~g~l~~~~~~~~~~g~g~ 136 (345)
T PF10282_consen 68 RIDPDTGTLTLLNSVPSG----GSSPCHIAVDPD-GRFLYVANYG------GGSVSVFPLDDDGSLGEVVQTVRHEGSGP 136 (345)
T ss_dssp EEETTTTEEEEEEEEEES----SSCEEEEEECTT-SSEEEEEETT------TTEEEEEEECTTSEEEEEEEEEESEEEES
T ss_pred EECCCcceeEEeeeeccC----CCCcEEEEEecC-CCEEEEEEcc------CCeEEEEEccCCcccceeeeecccCCCCC
Confidence 345555555555443321 224456677664 4455554321 556788888663 22211100 0
Q ss_pred ---cceecCCcceEE--CCcEEEEEeeCCCCCCCcEEEEEECCCce--ee---eeCCCCccCCCCceEEEEEE-CC-eEE
Q 017748 194 ---YFWVTGTCSVFV--NGALHWTAALNQDADRNDIIIAFDLKSEE--FY---QVPLPPIVGIEGYYILLEAL-GG-CLC 261 (366)
Q Consensus 194 ---~~~~~~~~~v~~--~G~lYw~~~~~~~~~~~~~i~~fD~~~~~--~~---~i~lP~~~~~~~~~~~l~~~-~g-~L~ 261 (366)
.........+.. +|...|+...+. ..|..|++..+. .. .+.+|... ....++.. +| .+|
T Consensus 137 ~~~rq~~~h~H~v~~~pdg~~v~v~dlG~-----D~v~~~~~~~~~~~l~~~~~~~~~~G~----GPRh~~f~pdg~~~Y 207 (345)
T PF10282_consen 137 NPDRQEGPHPHQVVFSPDGRFVYVPDLGA-----DRVYVYDIDDDTGKLTPVDSIKVPPGS----GPRHLAFSPDGKYAY 207 (345)
T ss_dssp STTTTSSTCEEEEEE-TTSSEEEEEETTT-----TEEEEEEE-TTS-TEEEEEEEECSTTS----SEEEEEE-TTSSEEE
T ss_pred cccccccccceeEEECCCCCEEEEEecCC-----CEEEEEEEeCCCceEEEeeccccccCC----CCcEEEEcCCcCEEE
Confidence 000011123333 477777776653 478888887665 43 34666654 23344443 34 556
Q ss_pred EEEeecCCCCCCcEEEEEeccCCCCCceEEEEEeccCCC---c--eeeEEEEecCCcEEEEEee-CCeEEEEeC--CCCe
Q 017748 262 LLCKFDDDDDDRPWDLWVMKEYGVNDSWTKLATLLNVGG---G--NVKPLVYSRSEDKVLLHAV-RGDLCWYDL--ERHR 333 (366)
Q Consensus 262 l~~~~~~~~~~~~l~iW~l~~~~~~~~W~~~~~i~~~~~---~--~~~~~~~~~~g~~i~~~~~-~~~~~~yd~--~t~~ 333 (366)
++..... .+.++.++.. ...+..+.+++...- + ...-+.+.++|+.||+... .+.+.+|++ ++++
T Consensus 208 v~~e~s~-----~v~v~~~~~~--~g~~~~~~~~~~~~~~~~~~~~~~~i~ispdg~~lyvsnr~~~sI~vf~~d~~~g~ 280 (345)
T PF10282_consen 208 VVNELSN-----TVSVFDYDPS--DGSLTEIQTISTLPEGFTGENAPAEIAISPDGRFLYVSNRGSNSISVFDLDPATGT 280 (345)
T ss_dssp EEETTTT-----EEEEEEEETT--TTEEEEEEEEESCETTSCSSSSEEEEEE-TTSSEEEEEECTTTEEEEEEECTTTTT
T ss_pred EecCCCC-----cEEEEeeccc--CCceeEEEEeeeccccccccCCceeEEEecCCCEEEEEeccCCEEEEEEEecCCCc
Confidence 6555443 8999888842 246777777764321 1 2445667788866777554 345777876 6678
Q ss_pred EEEe
Q 017748 334 VRSI 337 (366)
Q Consensus 334 ~~~v 337 (366)
++.+
T Consensus 281 l~~~ 284 (345)
T PF10282_consen 281 LTLV 284 (345)
T ss_dssp EEEE
T ss_pred eEEE
Confidence 8877
|
1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H. |
| >PF02897 Peptidase_S9_N: Prolyl oligopeptidase, N-terminal beta-propeller domain; InterPro: IPR004106 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families | Back alignment and domain information |
|---|
Probab=90.71 E-value=15 Score=34.52 Aligned_cols=148 Identities=13% Similarity=0.074 Sum_probs=78.4
Q ss_pred cEEEEEEecCC-----cEEEccCCCcceecCCcceEECCcEEEEEeeCCCCCCCcEEEEEECCCce---eeeeCCCCccC
Q 017748 174 TEVAVFSLRVN-----SWRRIQDFPYFWVTGTCSVFVNGALHWTAALNQDADRNDIIIAFDLKSEE---FYQVPLPPIVG 245 (366)
Q Consensus 174 ~~~~vyss~t~-----~W~~~~~~~~~~~~~~~~v~~~G~lYw~~~~~~~~~~~~~i~~fD~~~~~---~~~i~lP~~~~ 245 (366)
..+.+.+..++ .|+.+........ ...-..++.+|.++..+.. ...|++.|+.+-. |..+-.|...
T Consensus 252 s~v~~~d~~~~~~~~~~~~~l~~~~~~~~--~~v~~~~~~~yi~Tn~~a~---~~~l~~~~l~~~~~~~~~~~l~~~~~- 325 (414)
T PF02897_consen 252 SEVYLLDLDDGGSPDAKPKLLSPREDGVE--YYVDHHGDRLYILTNDDAP---NGRLVAVDLADPSPAEWWTVLIPEDE- 325 (414)
T ss_dssp EEEEEEECCCTTTSS-SEEEEEESSSS-E--EEEEEETTEEEEEE-TT-T---T-EEEEEETTSTSGGGEEEEEE--SS-
T ss_pred CeEEEEeccccCCCcCCcEEEeCCCCceE--EEEEccCCEEEEeeCCCCC---CcEEEEecccccccccceeEEcCCCC-
Confidence 55666666553 6766532111110 1122347788888774422 2589999999765 5544333322
Q ss_pred CCCceEEEEEECCeEEEEEeecCCCCCCcEEEEEeccCCCCCceEEEEEeccCCCceeeEEEEecCCcEEEEEeeCC---
Q 017748 246 IEGYYILLEALGGCLCLLCKFDDDDDDRPWDLWVMKEYGVNDSWTKLATLLNVGGGNVKPLVYSRSEDKVLLHAVRG--- 322 (366)
Q Consensus 246 ~~~~~~~l~~~~g~L~l~~~~~~~~~~~~l~iW~l~~~~~~~~W~~~~~i~~~~~~~~~~~~~~~~g~~i~~~~~~~--- 322 (366)
......+...++.|.+....+... .|.++-++ ..|.... ++....+.........+++.+++...+.
T Consensus 326 -~~~l~~~~~~~~~Lvl~~~~~~~~---~l~v~~~~-----~~~~~~~-~~~p~~g~v~~~~~~~~~~~~~~~~ss~~~P 395 (414)
T PF02897_consen 326 -DVSLEDVSLFKDYLVLSYRENGSS---RLRVYDLD-----DGKESRE-IPLPEAGSVSGVSGDFDSDELRFSYSSFTTP 395 (414)
T ss_dssp -SEEEEEEEEETTEEEEEEEETTEE---EEEEEETT------TEEEEE-EESSSSSEEEEEES-TT-SEEEEEEEETTEE
T ss_pred -ceeEEEEEEECCEEEEEEEECCcc---EEEEEECC-----CCcEEee-ecCCcceEEeccCCCCCCCEEEEEEeCCCCC
Confidence 112344555688999888876621 45555444 1244433 3222221112222234556788876543
Q ss_pred -eEEEEeCCCCeEEEe
Q 017748 323 -DLCWYDLERHRVRSI 337 (366)
Q Consensus 323 -~~~~yd~~t~~~~~v 337 (366)
.++.||+++++.+.+
T Consensus 396 ~~~y~~d~~t~~~~~~ 411 (414)
T PF02897_consen 396 PTVYRYDLATGELTLL 411 (414)
T ss_dssp EEEEEEETTTTCEEEE
T ss_pred CEEEEEECCCCCEEEE
Confidence 499999999999877
|
Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This entry represents the beta-propeller domain found at the N-terminal of prolyl oligopeptidase, including acylamino-acid-releasing enzyme (also known as acylaminoacyl peptidase), which belong to the MEROPS peptidase family S9 (clan SC), subfamily S9A. The prolyl oligopeptidase family consist of a number of evolutionary related peptidases whose catalytic activity seems to be provided by a charge relay system similar to that of the trypsin family of serine proteases, but which evolved by independent convergent evolution. The N-terminal domain of prolyl oligopeptidases form an unusual 7-bladed beta-propeller consisting of seven 4-stranded beta-sheet motifs. Prolyl oligopeptidase is a large cytosolic enzyme involved in the maturation and degradation of peptide hormones and neuropeptides, which relate to the induction of amnesia. The enzyme contains a peptidase domain, where its catalytic triad (Ser554, His680, Asp641) is covered by the central tunnel of the N-terminal beta-propeller domain. In this way, large structured peptides are excluded from the active site, thereby protecting larger peptides and proteins from proteolysis in the cytosol []. The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. Mammalian acylaminoacyl peptidase is an exopeptidase that is a member of the same prolyl oligopeptidase family of serine peptidases. This enzyme removes acylated amino acid residues from the N terminus of oligopeptides [].; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 2BKL_B 3DDU_A 1YR2_A 2XE4_A 1VZ3_A 3EQ9_A 1O6F_A 3EQ7_A 4AN0_A 1UOP_A .... |
| >COG1520 FOG: WD40-like repeat [Function unknown] | Back alignment and domain information |
|---|
Probab=90.48 E-value=10 Score=34.96 Aligned_cols=143 Identities=11% Similarity=-0.040 Sum_probs=81.4
Q ss_pred ccEEEEEEecCCcEEEc-cCCCcceecCCc-ceEECCcEEEEEeeCCCCCCCcEEEEEECCCce--eeeeCCC-CccCCC
Q 017748 173 YTEVAVFSLRVNSWRRI-QDFPYFWVTGTC-SVFVNGALHWTAALNQDADRNDIIIAFDLKSEE--FYQVPLP-PIVGIE 247 (366)
Q Consensus 173 ~~~~~vyss~t~~W~~~-~~~~~~~~~~~~-~v~~~G~lYw~~~~~~~~~~~~~i~~fD~~~~~--~~~i~lP-~~~~~~ 247 (366)
.........++..|... ....... .... .++.+|++|.....+ .|.+||+++.. |+.-..+ ...
T Consensus 34 ~~~~~~~~~g~~~W~~~~~~~~~~~-~~~~~~~~~dg~v~~~~~~G-------~i~A~d~~~g~~~W~~~~~~~~~~--- 102 (370)
T COG1520 34 LVAVANNTSGTLLWSVSLGSGGGGI-YAGPAPADGDGTVYVGTRDG-------NIFALNPDTGLVKWSYPLLGAVAQ--- 102 (370)
T ss_pred ceEEEcccCcceeeeeecccCccce-EeccccEeeCCeEEEecCCC-------cEEEEeCCCCcEEecccCcCccee---
Confidence 34455566677788643 1111111 2222 589999999985544 69999999876 6544443 111
Q ss_pred CceEEEEEECCeEEEEEeecCCCCCCcEEEEEeccCCCCCceEEEEEeccCCCceeeEEEEecCCcEEEEEeeCCeEEEE
Q 017748 248 GYYILLEALGGCLCLLCKFDDDDDDRPWDLWVMKEYGVNDSWTKLATLLNVGGGNVKPLVYSRSEDKVLLHAVRGDLCWY 327 (366)
Q Consensus 248 ~~~~~l~~~~g~L~l~~~~~~~~~~~~l~iW~l~~~~~~~~W~~~~~i~~~~~~~~~~~~~~~~g~~i~~~~~~~~~~~y 327 (366)
...-+...+|+|++-... . .++.++....+..|.....- . .....+.. ..++ .+++...++.+++.
T Consensus 103 -~~~~~~~~~G~i~~g~~~-------g-~~y~ld~~~G~~~W~~~~~~-~--~~~~~~~v-~~~~-~v~~~s~~g~~~al 168 (370)
T COG1520 103 -LSGPILGSDGKIYVGSWD-------G-KLYALDASTGTLVWSRNVGG-S--PYYASPPV-VGDG-TVYVGTDDGHLYAL 168 (370)
T ss_pred -ccCceEEeCCeEEEeccc-------c-eEEEEECCCCcEEEEEecCC-C--eEEecCcE-EcCc-EEEEecCCCeEEEE
Confidence 111223337776654432 1 56777774334567774333 1 11122222 2234 67777666789999
Q ss_pred eCCCCeEEEeeee
Q 017748 328 DLERHRVRSIVEI 340 (366)
Q Consensus 328 d~~t~~~~~v~~~ 340 (366)
|.+|++..+.+++
T Consensus 169 ~~~tG~~~W~~~~ 181 (370)
T COG1520 169 NADTGTLKWTYET 181 (370)
T ss_pred EccCCcEEEEEec
Confidence 9999988776444
|
|
| >PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species | Back alignment and domain information |
|---|
Probab=90.44 E-value=11 Score=32.48 Aligned_cols=198 Identities=19% Similarity=0.180 Sum_probs=104.8
Q ss_pred ceeEEeec-CCccEEEEEeccccceeecCCcCCCCCCCCcceEEEeeecCCCCeEEEEEEEEcCCCCccEEEEEEecCCc
Q 017748 107 NGLLALED-SRRNIMLLLNPLTKRHRVLPTFYRDLSRCVPSLEGFGFDVGSGDFKLVKILAFGKPMNYTEVAVFSLRVNS 185 (366)
Q Consensus 107 ~Gll~~~~-~~~~~~~V~NP~t~~~~~LP~~~~~~~~~~~~~~~lg~d~~~~~ykvv~~~~~~~~~~~~~~~vyss~t~~ 185 (366)
+|-|.+.+ ...+++ .++|.+++...+..+. ..++.++...+ +++... .....+++..++.
T Consensus 11 ~g~l~~~D~~~~~i~-~~~~~~~~~~~~~~~~---------~~G~~~~~~~g--~l~v~~-------~~~~~~~d~~~g~ 71 (246)
T PF08450_consen 11 DGRLYWVDIPGGRIY-RVDPDTGEVEVIDLPG---------PNGMAFDRPDG--RLYVAD-------SGGIAVVDPDTGK 71 (246)
T ss_dssp TTEEEEEETTTTEEE-EEETTTTEEEEEESSS---------EEEEEEECTTS--EEEEEE-------TTCEEEEETTTTE
T ss_pred CCEEEEEEcCCCEEE-EEECCCCeEEEEecCC---------CceEEEEccCC--EEEEEE-------cCceEEEecCCCc
Confidence 44444444 567788 9999998876544332 23555553222 222221 4456777999999
Q ss_pred EEEccCCCcc---eecCCc-ceEECCcEEEEEeeCCCCCCC--cEEEEEECCCceeeee----CCCCccCCCCceEEEEE
Q 017748 186 WRRIQDFPYF---WVTGTC-SVFVNGALHWTAALNQDADRN--DIIIAFDLKSEEFYQV----PLPPIVGIEGYYILLEA 255 (366)
Q Consensus 186 W~~~~~~~~~---~~~~~~-~v~~~G~lYw~~~~~~~~~~~--~~i~~fD~~~~~~~~i----~lP~~~~~~~~~~~l~~ 255 (366)
++.+...+.. ....+. .+--+|.+|+-.......... ..+..+|.. .+...+ ..|.. |+.
T Consensus 72 ~~~~~~~~~~~~~~~~~ND~~vd~~G~ly~t~~~~~~~~~~~~g~v~~~~~~-~~~~~~~~~~~~pNG---------i~~ 141 (246)
T PF08450_consen 72 VTVLADLPDGGVPFNRPNDVAVDPDGNLYVTDSGGGGASGIDPGSVYRIDPD-GKVTVVADGLGFPNG---------IAF 141 (246)
T ss_dssp EEEEEEEETTCSCTEEEEEEEE-TTS-EEEEEECCBCTTCGGSEEEEEEETT-SEEEEEEEEESSEEE---------EEE
T ss_pred EEEEeeccCCCcccCCCceEEEcCCCCEEEEecCCCccccccccceEEECCC-CeEEEEecCcccccc---------eEE
Confidence 9887654311 111221 233468876665443222222 579999999 554443 22222 222
Q ss_pred E-CC-eEEEEEeecCCCCCCcEEEEEeccCCCCCceEEEEEe-ccCCC-ceeeEEEEecCCcEEEEEee-CCeEEEEeCC
Q 017748 256 L-GG-CLCLLCKFDDDDDDRPWDLWVMKEYGVNDSWTKLATL-LNVGG-GNVKPLVYSRSEDKVLLHAV-RGDLCWYDLE 330 (366)
Q Consensus 256 ~-~g-~L~l~~~~~~~~~~~~l~iW~l~~~~~~~~W~~~~~i-~~~~~-~~~~~~~~~~~g~~i~~~~~-~~~~~~yd~~ 330 (366)
. +| .||++... .-.||.++-......+.....+ ..... +...=+++..+| .|++... .+++..||++
T Consensus 142 s~dg~~lyv~ds~-------~~~i~~~~~~~~~~~~~~~~~~~~~~~~~g~pDG~~vD~~G-~l~va~~~~~~I~~~~p~ 213 (246)
T PF08450_consen 142 SPDGKTLYVADSF-------NGRIWRFDLDADGGELSNRRVFIDFPGGPGYPDGLAVDSDG-NLWVADWGGGRIVVFDPD 213 (246)
T ss_dssp ETTSSEEEEEETT-------TTEEEEEEEETTTCCEEEEEEEEE-SSSSCEEEEEEEBTTS--EEEEEETTTEEEEEETT
T ss_pred CCcchheeecccc-------cceeEEEeccccccceeeeeeEEEcCCCCcCCCcceEcCCC-CEEEEEcCCCEEEEECCC
Confidence 2 45 45554443 2336666654333446655444 22221 123335555566 7777754 5679999999
Q ss_pred CCeEEEeeeecC
Q 017748 331 RHRVRSIVEIDD 342 (366)
Q Consensus 331 t~~~~~v~~~~~ 342 (366)
.+....+ ++..
T Consensus 214 G~~~~~i-~~p~ 224 (246)
T PF08450_consen 214 GKLLREI-ELPV 224 (246)
T ss_dssp SCEEEEE-E-SS
T ss_pred ccEEEEE-cCCC
Confidence 6666666 7764
|
These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A .... |
| >PF13415 Kelch_3: Galactose oxidase, central domain | Back alignment and domain information |
|---|
Probab=90.17 E-value=1 Score=27.79 Aligned_cols=39 Identities=21% Similarity=0.363 Sum_probs=26.7
Q ss_pred CCcEEEEEeeC-CCCCCCcEEEEEECCCceeeee-CCCCcc
Q 017748 206 NGALHWTAALN-QDADRNDIIIAFDLKSEEFYQV-PLPPIV 244 (366)
Q Consensus 206 ~G~lYw~~~~~-~~~~~~~~i~~fD~~~~~~~~i-~lP~~~ 244 (366)
++.+|..++.. ........+.+||+.+.+|+.+ ++|...
T Consensus 1 g~~~~vfGG~~~~~~~~~nd~~~~~~~~~~W~~~~~~P~~R 41 (49)
T PF13415_consen 1 GNKLYVFGGYDDDGGTRLNDVWVFDLDTNTWTRIGDLPPPR 41 (49)
T ss_pred CCEEEEECCcCCCCCCEecCEEEEECCCCEEEECCCCCCCc
Confidence 35667666655 2233345799999999999988 555544
|
|
| >TIGR03075 PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methanol/ethanol family | Back alignment and domain information |
|---|
Probab=89.87 E-value=6.5 Score=38.32 Aligned_cols=120 Identities=18% Similarity=0.100 Sum_probs=65.7
Q ss_pred CcceEECCcEEEEEeeCCCCCCCcEEEEEECCCc--eeeee-CCCCccCC----CCceEEEEEECCeEEEEEeecCCCCC
Q 017748 200 TCSVFVNGALHWTAALNQDADRNDIIIAFDLKSE--EFYQV-PLPPIVGI----EGYYILLEALGGCLCLLCKFDDDDDD 272 (366)
Q Consensus 200 ~~~v~~~G~lYw~~~~~~~~~~~~~i~~fD~~~~--~~~~i-~lP~~~~~----~~~~~~l~~~~g~L~l~~~~~~~~~~ 272 (366)
..+++.+|.+|.....+ .|+++|.++. .|+.- ..|..... ......++..+|++++....
T Consensus 63 stPvv~~g~vyv~s~~g-------~v~AlDa~TGk~lW~~~~~~~~~~~~~~~~~~~~rg~av~~~~v~v~t~d------ 129 (527)
T TIGR03075 63 SQPLVVDGVMYVTTSYS-------RVYALDAKTGKELWKYDPKLPDDVIPVMCCDVVNRGVALYDGKVFFGTLD------ 129 (527)
T ss_pred cCCEEECCEEEEECCCC-------cEEEEECCCCceeeEecCCCCcccccccccccccccceEECCEEEEEcCC------
Confidence 45788999999866544 6999999864 55433 33322200 00112234556777764431
Q ss_pred CcEEEEEeccCCCCCceEEEEE-eccCCCceeeEEEEecCCcEEEEEee------CCeEEEEeCCCCeEEEe
Q 017748 273 RPWDLWVMKEYGVNDSWTKLAT-LLNVGGGNVKPLVYSRSEDKVLLHAV------RGDLCWYDLERHRVRSI 337 (366)
Q Consensus 273 ~~l~iW~l~~~~~~~~W~~~~~-i~~~~~~~~~~~~~~~~g~~i~~~~~------~~~~~~yd~~t~~~~~v 337 (366)
=.+..|+...++..|..... ..........|+.. ++ .|++... ++.+++||.+|++..+-
T Consensus 130 --g~l~ALDa~TGk~~W~~~~~~~~~~~~~tssP~v~--~g-~Vivg~~~~~~~~~G~v~AlD~~TG~~lW~ 196 (527)
T TIGR03075 130 --ARLVALDAKTGKVVWSKKNGDYKAGYTITAAPLVV--KG-KVITGISGGEFGVRGYVTAYDAKTGKLVWR 196 (527)
T ss_pred --CEEEEEECCCCCEEeecccccccccccccCCcEEE--CC-EEEEeecccccCCCcEEEEEECCCCceeEe
Confidence 23555665434456765321 11000001234333 33 6777643 35699999999997765
|
This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Genes in this family often are found adjacent to the PQQ biosynthesis genes themselves. An unusual, strained disulfide bond between adjacent Cys residues contributes to PQQ-binding, as does a Trp residue that is part of a PQQ enzyme repeat (see pfam01011). Characterized members include the dehydrogenase subunit of a membrane-anchored, three subunit alcohol (ethanol) dehydrogenase of Gluconobacter suboxydans, a homodimeric ethanol dehydrogenase in Pseudomonas aeruginosa, and the large subunit of an alpha2/beta2 heterotetrameric methanol dehydrogenase in Methylobacterium extorquens. |
| >KOG0647 consensus mRNA export protein (contains WD40 repeats) [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=89.50 E-value=5.6 Score=34.91 Aligned_cols=75 Identities=19% Similarity=0.232 Sum_probs=49.5
Q ss_pred CCeEEEEEeecCCCCCCcEEEEEeccCCCCCceEEEEEeccCCCceeeEEEEecCCcEEEEEeeCCeEEEEeCCCCeEEE
Q 017748 257 GGCLCLLCKFDDDDDDRPWDLWVMKEYGVNDSWTKLATLLNVGGGNVKPLVYSRSEDKVLLHAVRGDLCWYDLERHRVRS 336 (366)
Q Consensus 257 ~g~L~l~~~~~~~~~~~~l~iW~l~~~~~~~~W~~~~~i~~~~~~~~~~~~~~~~g~~i~~~~~~~~~~~yd~~t~~~~~ 336 (366)
.+-+..++..++ .+++|++++.+.... +........ .-..+...+|.+|+....+..+-.||+.+++...
T Consensus 39 ~~~~~~A~SWD~-----tVR~wevq~~g~~~~---ka~~~~~~P--vL~v~WsddgskVf~g~~Dk~~k~wDL~S~Q~~~ 108 (347)
T KOG0647|consen 39 ADNLLAAGSWDG-----TVRIWEVQNSGQLVP---KAQQSHDGP--VLDVCWSDDGSKVFSGGCDKQAKLWDLASGQVSQ 108 (347)
T ss_pred cCceEEecccCC-----ceEEEEEecCCcccc---hhhhccCCC--eEEEEEccCCceEEeeccCCceEEEEccCCCeee
Confidence 345555666666 899999998642111 111111111 2234455777788888888889999999999999
Q ss_pred eeeecC
Q 017748 337 IVEIDD 342 (366)
Q Consensus 337 v~~~~~ 342 (366)
| ..+.
T Consensus 109 v-~~Hd 113 (347)
T KOG0647|consen 109 V-AAHD 113 (347)
T ss_pred e-eecc
Confidence 9 6654
|
|
| >PF05096 Glu_cyclase_2: Glutamine cyclotransferase; InterPro: IPR007788 This family of enzymes 2 | Back alignment and domain information |
|---|
Probab=88.99 E-value=15 Score=32.04 Aligned_cols=145 Identities=12% Similarity=0.111 Sum_probs=80.2
Q ss_pred CCccEEEEEEecCCcEEEccCCCcceecCCcceEECCcEEEEEeeCCCCCCCcEEEEEECCCc-eeeeeCCCCccCCCCc
Q 017748 171 MNYTEVAVFSLRVNSWRRIQDFPYFWVTGTCSVFVNGALHWTAALNQDADRNDIIIAFDLKSE-EFYQVPLPPIVGIEGY 249 (366)
Q Consensus 171 ~~~~~~~vyss~t~~W~~~~~~~~~~~~~~~~v~~~G~lYw~~~~~~~~~~~~~i~~fD~~~~-~~~~i~lP~~~~~~~~ 249 (366)
...+.+..|+..++.=.....+|...+.. ....+++.+|-++... .....||..+- .-..++.|. .
T Consensus 65 yG~S~l~~~d~~tg~~~~~~~l~~~~FgE-Git~~~d~l~qLTWk~------~~~f~yd~~tl~~~~~~~y~~------E 131 (264)
T PF05096_consen 65 YGQSSLRKVDLETGKVLQSVPLPPRYFGE-GITILGDKLYQLTWKE------GTGFVYDPNTLKKIGTFPYPG------E 131 (264)
T ss_dssp TTEEEEEEEETTTSSEEEEEE-TTT--EE-EEEEETTEEEEEESSS------SEEEEEETTTTEEEEEEE-SS------S
T ss_pred CCcEEEEEEECCCCcEEEEEECCccccce-eEEEECCEEEEEEecC------CeEEEEccccceEEEEEecCC------c
Confidence 44678889999988754444555443322 2456899999999876 48999999863 333445543 2
Q ss_pred eEEEEEECCeEEEEEeecCCCCCCcEEEEEeccCCCCCceEEEEEeccCCC----ceeeEEEEecCCcEEEEEee-CCeE
Q 017748 250 YILLEALGGCLCLLCKFDDDDDDRPWDLWVMKEYGVNDSWTKLATLLNVGG----GNVKPLVYSRSEDKVLLHAV-RGDL 324 (366)
Q Consensus 250 ~~~l~~~~g~L~l~~~~~~~~~~~~l~iW~l~~~~~~~~W~~~~~i~~~~~----~~~~~~~~~~~g~~i~~~~~-~~~~ 324 (366)
..-|+.-+..|++-.+. =.++.++.. ....+.+|..... +..--+=+ .+| .|+-.-. ...+
T Consensus 132 GWGLt~dg~~Li~SDGS--------~~L~~~dP~----~f~~~~~i~V~~~g~pv~~LNELE~-i~G-~IyANVW~td~I 197 (264)
T PF05096_consen 132 GWGLTSDGKRLIMSDGS--------SRLYFLDPE----TFKEVRTIQVTDNGRPVSNLNELEY-ING-KIYANVWQTDRI 197 (264)
T ss_dssp --EEEECSSCEEEE-SS--------SEEEEE-TT----T-SEEEEEE-EETTEE---EEEEEE-ETT-EEEEEETTSSEE
T ss_pred ceEEEcCCCEEEEECCc--------cceEEECCc----ccceEEEEEEEECCEECCCcEeEEE-EcC-EEEEEeCCCCeE
Confidence 33455556666665552 235556542 2444444443211 00111111 255 7777654 4469
Q ss_pred EEEeCCCCeEEEeeeecC
Q 017748 325 CWYDLERHRVRSIVEIDD 342 (366)
Q Consensus 325 ~~yd~~t~~~~~v~~~~~ 342 (366)
+..|++|++....+++.+
T Consensus 198 ~~Idp~tG~V~~~iDls~ 215 (264)
T PF05096_consen 198 VRIDPETGKVVGWIDLSG 215 (264)
T ss_dssp EEEETTT-BEEEEEE-HH
T ss_pred EEEeCCCCeEEEEEEhhH
Confidence 999999999988767753
|
3.2.5 from EC catalyse the cyclization of free L-glutamine and N-terminal glutaminyl residues in proteins to pyroglutamate (5-oxoproline) and pyroglutamyl residues respectively []. This family includes plant and bacterial enzymes and seems unrelated to the mammalian enzymes.; PDB: 3NOK_B 2FAW_A 2IWA_A 3NOM_A 3NOL_A 3MBR_X. |
| >PRK11028 6-phosphogluconolactonase; Provisional | Back alignment and domain information |
|---|
Probab=88.93 E-value=17 Score=32.75 Aligned_cols=140 Identities=6% Similarity=0.090 Sum_probs=70.7
Q ss_pred ccEEEEEEecC-CcEEEccCCCcceecCCcceEE--CCcEEEEEeeCCCCCCCcEEEEEECC-CceeeeeC-CCCccCCC
Q 017748 173 YTEVAVFSLRV-NSWRRIQDFPYFWVTGTCSVFV--NGALHWTAALNQDADRNDIIIAFDLK-SEEFYQVP-LPPIVGIE 247 (366)
Q Consensus 173 ~~~~~vyss~t-~~W~~~~~~~~~~~~~~~~v~~--~G~lYw~~~~~~~~~~~~~i~~fD~~-~~~~~~i~-lP~~~~~~ 247 (366)
...+.+|+..+ +.++.+...+.. .....+.+ +|..-+++.... ..|.+|++. ++++..+. .|...
T Consensus 11 ~~~I~~~~~~~~g~l~~~~~~~~~--~~~~~l~~spd~~~lyv~~~~~-----~~i~~~~~~~~g~l~~~~~~~~~~--- 80 (330)
T PRK11028 11 SQQIHVWNLNHEGALTLLQVVDVP--GQVQPMVISPDKRHLYVGVRPE-----FRVLSYRIADDGALTFAAESPLPG--- 80 (330)
T ss_pred CCCEEEEEECCCCceeeeeEEecC--CCCccEEECCCCCEEEEEECCC-----CcEEEEEECCCCceEEeeeecCCC---
Confidence 34567777753 677665443321 11123333 465444443322 368888886 45555442 22211
Q ss_pred CceEEEEEE-CCeEEEEEeecCCCCCCcEEEEEeccCCCCCceEEEEEeccCCCceeeEEEEecCCcEEEEEee-CCeEE
Q 017748 248 GYYILLEAL-GGCLCLLCKFDDDDDDRPWDLWVMKEYGVNDSWTKLATLLNVGGGNVKPLVYSRSEDKVLLHAV-RGDLC 325 (366)
Q Consensus 248 ~~~~~l~~~-~g~L~l~~~~~~~~~~~~l~iW~l~~~~~~~~W~~~~~i~~~~~~~~~~~~~~~~g~~i~~~~~-~~~~~ 325 (366)
....++.. +|+..++...... .+.+|.+++.+.. ...+..++.... .+-.++.++|+.+++... ++.+.
T Consensus 81 -~p~~i~~~~~g~~l~v~~~~~~----~v~v~~~~~~g~~--~~~~~~~~~~~~--~~~~~~~p~g~~l~v~~~~~~~v~ 151 (330)
T PRK11028 81 -SPTHISTDHQGRFLFSASYNAN----CVSVSPLDKDGIP--VAPIQIIEGLEG--CHSANIDPDNRTLWVPCLKEDRIR 151 (330)
T ss_pred -CceEEEECCCCCEEEEEEcCCC----eEEEEEECCCCCC--CCceeeccCCCc--ccEeEeCCCCCEEEEeeCCCCEEE
Confidence 11233433 4554444443332 8999999754321 222333322111 333556777767766654 45699
Q ss_pred EEeCCC
Q 017748 326 WYDLER 331 (366)
Q Consensus 326 ~yd~~t 331 (366)
+||+++
T Consensus 152 v~d~~~ 157 (330)
T PRK11028 152 LFTLSD 157 (330)
T ss_pred EEEECC
Confidence 999976
|
|
| >KOG2055 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=88.24 E-value=22 Score=33.18 Aligned_cols=114 Identities=14% Similarity=0.173 Sum_probs=67.4
Q ss_pred EECCc-EEEEEeeCCCCCCCcEEEEEECCCceeeeeCCCCccCCCCceEEEEEE-CCeEEEEEeecCCCCCCcEEEEEec
Q 017748 204 FVNGA-LHWTAALNQDADRNDIIIAFDLKSEEFYQVPLPPIVGIEGYYILLEAL-GGCLCLLCKFDDDDDDRPWDLWVMK 281 (366)
Q Consensus 204 ~~~G~-lYw~~~~~~~~~~~~~i~~fD~~~~~~~~i~lP~~~~~~~~~~~l~~~-~g~L~l~~~~~~~~~~~~l~iW~l~ 281 (366)
+-+|. .-+.++.. ..+++||+++.+...+..|.... ....-...+. .+...++.+..+ .|.+-...
T Consensus 266 ~p~G~~~i~~s~rr------ky~ysyDle~ak~~k~~~~~g~e-~~~~e~FeVShd~~fia~~G~~G-----~I~lLhak 333 (514)
T KOG2055|consen 266 APNGHSVIFTSGRR------KYLYSYDLETAKVTKLKPPYGVE-EKSMERFEVSHDSNFIAIAGNNG-----HIHLLHAK 333 (514)
T ss_pred cCCCceEEEecccc------eEEEEeeccccccccccCCCCcc-cchhheeEecCCCCeEEEcccCc-----eEEeehhh
Confidence 34565 44444443 48999999999999998888773 1111112222 233333333333 55553333
Q ss_pred cCCCCCceEEEEEeccCCCceeeEEEEecCCcEEEEEeeCCeEEEEeCCCCeEEEe
Q 017748 282 EYGVNDSWTKLATLLNVGGGNVKPLVYSRSEDKVLLHAVRGDLCWYDLERHRVRSI 337 (366)
Q Consensus 282 ~~~~~~~W~~~~~i~~~~~~~~~~~~~~~~g~~i~~~~~~~~~~~yd~~t~~~~~v 337 (366)
. ++|..-..|+- ...-..+..++..|+.+..++.|+.+|+++++....
T Consensus 334 T----~eli~s~KieG----~v~~~~fsSdsk~l~~~~~~GeV~v~nl~~~~~~~r 381 (514)
T KOG2055|consen 334 T----KELITSFKIEG----VVSDFTFSSDSKELLASGGTGEVYVWNLRQNSCLHR 381 (514)
T ss_pred h----hhhhheeeecc----EEeeEEEecCCcEEEEEcCCceEEEEecCCcceEEE
Confidence 2 34555444432 244556666776777777778899999999976544
|
|
| >COG4257 Vgb Streptogramin lyase [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=88.19 E-value=12 Score=32.56 Aligned_cols=141 Identities=18% Similarity=0.141 Sum_probs=83.3
Q ss_pred eEEEeeeceeEEeec-CCccEEEEEeccccceeecCCcCCCCCCCCcceEEEeeecCCCCeEEEEEEEEcCCCCccEEEE
Q 017748 100 GFIIGSCNGLLALED-SRRNIMLLLNPLTKRHRVLPTFYRDLSRCVPSLEGFGFDVGSGDFKLVKILAFGKPMNYTEVAV 178 (366)
Q Consensus 100 ~~~~~s~~Gll~~~~-~~~~~~~V~NP~t~~~~~LP~~~~~~~~~~~~~~~lg~d~~~~~ykvv~~~~~~~~~~~~~~~v 178 (366)
.-+++.-+|=|-... ..+.+. -.||.++.-..+|.|..-... .-.+..|+... +.+. ......+..
T Consensus 192 yGi~atpdGsvwyaslagnaia-ridp~~~~aev~p~P~~~~~g----sRriwsdpig~----~wit----twg~g~l~r 258 (353)
T COG4257 192 YGICATPDGSVWYASLAGNAIA-RIDPFAGHAEVVPQPNALKAG----SRRIWSDPIGR----AWIT----TWGTGSLHR 258 (353)
T ss_pred cceEECCCCcEEEEeccccceE-EcccccCCcceecCCCccccc----ccccccCccCc----EEEe----ccCCceeeE
Confidence 347777778775554 345566 889999988888877542221 11234444321 1111 122456888
Q ss_pred EEecCCcEEEccCCCcceecCCcceEECC-cEEEEEeeCCCCCCCcEEEEEECCCceeeeeCCCCccCCCCceEEEEEEC
Q 017748 179 FSLRVNSWRRIQDFPYFWVTGTCSVFVNG-ALHWTAALNQDADRNDIIIAFDLKSEEFYQVPLPPIVGIEGYYILLEALG 257 (366)
Q Consensus 179 yss~t~~W~~~~~~~~~~~~~~~~v~~~G-~lYw~~~~~~~~~~~~~i~~fD~~~~~~~~i~lP~~~~~~~~~~~l~~~~ 257 (366)
|+..+.+|.+-.-+... ....++++|. -.-|+..-.. ..|..||+++++|+.++.|.... ....|.-..
T Consensus 259 fdPs~~sW~eypLPgs~--arpys~rVD~~grVW~sea~a-----gai~rfdpeta~ftv~p~pr~n~---gn~ql~gr~ 328 (353)
T COG4257 259 FDPSVTSWIEYPLPGSK--ARPYSMRVDRHGRVWLSEADA-----GAIGRFDPETARFTVLPIPRPNS---GNIQLDGRP 328 (353)
T ss_pred eCcccccceeeeCCCCC--CCcceeeeccCCcEEeecccc-----CceeecCcccceEEEecCCCCCC---CceeccCCC
Confidence 99999999976422111 2233555553 3446654432 48999999999999998887641 133333334
Q ss_pred CeEEEE
Q 017748 258 GCLCLL 263 (366)
Q Consensus 258 g~L~l~ 263 (366)
|++.+.
T Consensus 329 ge~W~~ 334 (353)
T COG4257 329 GELWFT 334 (353)
T ss_pred Cceeec
Confidence 555553
|
|
| >KOG3545 consensus Olfactomedin and related extracellular matrix glycoproteins [Extracellular structures] | Back alignment and domain information |
|---|
Probab=88.12 E-value=7.9 Score=33.10 Aligned_cols=141 Identities=18% Similarity=0.165 Sum_probs=83.4
Q ss_pred CcEEEccCCCcceecCCcceEECCcEEEEEeeCCCCCCCcEEEEEECCCcee-eeeCCCCccCC--------CCceEEEE
Q 017748 184 NSWRRIQDFPYFWVTGTCSVFVNGALHWTAALNQDADRNDIIIAFDLKSEEF-YQVPLPPIVGI--------EGYYILLE 254 (366)
Q Consensus 184 ~~W~~~~~~~~~~~~~~~~v~~~G~lYw~~~~~~~~~~~~~i~~fD~~~~~~-~~i~lP~~~~~--------~~~~~~l~ 254 (366)
+.|...-.+|..+. .+..|+.+|.+|+..... ..|+.||++++.- ....+|...-. ......++
T Consensus 56 ~~~~~~~~lp~~~~-gTg~VVynGs~yynk~~t------~~ivky~l~~~~~~~~~~lp~a~y~~~~~y~~~g~sdiD~a 128 (249)
T KOG3545|consen 56 GRKAEKYRLPYSWD-GTGHVVYNGSLYYNKAGT------RNIIKYDLETRTVAGSAALPYAGYHNPSPYYWGGHSDIDLA 128 (249)
T ss_pred cCcceEEeCCCCcc-ccceEEEcceEEeeccCC------cceEEEEeecceeeeeeeccccccCCCcccccCCCccccce
Confidence 45555445555442 344689999999988655 4899999998544 34466654411 11235778
Q ss_pred EECCeEEEEEeecCCCCCCcEEEEEeccC--CCCCceEEEEEeccCCCceeeEEEEecCCcEEEEEeeC----Ce-EEEE
Q 017748 255 ALGGCLCLLCKFDDDDDDRPWDLWVMKEY--GVNDSWTKLATLLNVGGGNVKPLVYSRSEDKVLLHAVR----GD-LCWY 327 (366)
Q Consensus 255 ~~~g~L~l~~~~~~~~~~~~l~iW~l~~~--~~~~~W~~~~~i~~~~~~~~~~~~~~~~g~~i~~~~~~----~~-~~~y 327 (366)
+-+..|.++....++ ...+.|-.|+.. ..+..|..-..-... --++..+| .++..... .. -++|
T Consensus 129 vDE~GLWviYat~~~--~g~iv~skLdp~tl~~e~tW~T~~~k~~~------~~aF~iCG-vLY~v~S~~~~~~~i~yay 199 (249)
T KOG3545|consen 129 VDENGLWVIYATPEN--AGTIVLSKLDPETLEVERTWNTTLPKRSA------GNAFMICG-VLYVVHSYNCTHTQISYAY 199 (249)
T ss_pred ecccceeEEeccccc--CCcEEeeccCHHHhheeeeeccccCCCCc------CceEEEee-eeEEEeccccCCceEEEEE
Confidence 888888887776542 225666777763 234556542222111 12333345 55555431 22 3799
Q ss_pred eCCCCeEEEeeeec
Q 017748 328 DLERHRVRSIVEID 341 (366)
Q Consensus 328 d~~t~~~~~v~~~~ 341 (366)
|..+++-+.+ .|+
T Consensus 200 dt~~~~~~~~-~ip 212 (249)
T KOG3545|consen 200 DTTTGTQERI-DLP 212 (249)
T ss_pred EcCCCceecc-ccc
Confidence 9999999888 653
|
|
| >PF01011 PQQ: PQQ enzyme repeat family | Back alignment and domain information |
|---|
Probab=87.52 E-value=1.6 Score=25.25 Aligned_cols=29 Identities=17% Similarity=0.127 Sum_probs=24.3
Q ss_pred EEEEEeeCCeEEEEeCCCCeEEEeeeecC
Q 017748 314 KVLLHAVRGDLCWYDLERHRVRSIVEIDD 342 (366)
Q Consensus 314 ~i~~~~~~~~~~~yd~~t~~~~~v~~~~~ 342 (366)
.|++...++.++++|.+|++..+-++..+
T Consensus 2 ~v~~~~~~g~l~AlD~~TG~~~W~~~~~~ 30 (38)
T PF01011_consen 2 RVYVGTPDGYLYALDAKTGKVLWKFQTGP 30 (38)
T ss_dssp EEEEETTTSEEEEEETTTTSEEEEEESSS
T ss_pred EEEEeCCCCEEEEEECCCCCEEEeeeCCC
Confidence 68888778889999999999988766654
|
; InterPro: IPR002372 Pyrrolo-quinoline quinone (PQQ) is a redox coenzyme, which serves as a cofactor for a number of enzymes (quinoproteins) and particularly for some bacterial dehydrogenases [, ]. A number of bacterial quinoproteins belong to this family. Enzymes in this group have repeats of a beta propeller.; PDB: 1H4I_C 1H4J_E 1W6S_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A 1G72_A .... |
| >PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species | Back alignment and domain information |
|---|
Probab=87.40 E-value=18 Score=31.09 Aligned_cols=108 Identities=16% Similarity=0.132 Sum_probs=66.0
Q ss_pred CCcEEEEEeeCCCCCCCcEEEEEECCCceeeeeCCCCccCCCCceEEEEEECCeEEEEEeecCCCCCCcEEEEEeccCCC
Q 017748 206 NGALHWTAALNQDADRNDIIIAFDLKSEEFYQVPLPPIVGIEGYYILLEALGGCLCLLCKFDDDDDDRPWDLWVMKEYGV 285 (366)
Q Consensus 206 ~G~lYw~~~~~~~~~~~~~i~~fD~~~~~~~~i~lP~~~~~~~~~~~l~~~~g~L~l~~~~~~~~~~~~l~iW~l~~~~~ 285 (366)
+|.+||..... ..|..+|+.+++...+.+|... ...+..-+|+|+++... .+.+. +. .
T Consensus 11 ~g~l~~~D~~~------~~i~~~~~~~~~~~~~~~~~~~-----G~~~~~~~g~l~v~~~~-------~~~~~--d~--~ 68 (246)
T PF08450_consen 11 DGRLYWVDIPG------GRIYRVDPDTGEVEVIDLPGPN-----GMAFDRPDGRLYVADSG-------GIAVV--DP--D 68 (246)
T ss_dssp TTEEEEEETTT------TEEEEEETTTTEEEEEESSSEE-----EEEEECTTSEEEEEETT-------CEEEE--ET--T
T ss_pred CCEEEEEEcCC------CEEEEEECCCCeEEEEecCCCc-----eEEEEccCCEEEEEEcC-------ceEEE--ec--C
Confidence 69999997654 3899999999999888777732 22222236777776542 33333 32 2
Q ss_pred CCceEEEEEeccC--CCceeeEEEEecCCcEEEEEeeC---------CeEEEEeCCCCeEEEe
Q 017748 286 NDSWTKLATLLNV--GGGNVKPLVYSRSEDKVLLHAVR---------GDLCWYDLERHRVRSI 337 (366)
Q Consensus 286 ~~~W~~~~~i~~~--~~~~~~~~~~~~~g~~i~~~~~~---------~~~~~yd~~t~~~~~v 337 (366)
.++++.+...... .......+++..+| .+++.... ++++.+++. ++.+.+
T Consensus 69 ~g~~~~~~~~~~~~~~~~~~ND~~vd~~G-~ly~t~~~~~~~~~~~~g~v~~~~~~-~~~~~~ 129 (246)
T PF08450_consen 69 TGKVTVLADLPDGGVPFNRPNDVAVDPDG-NLYVTDSGGGGASGIDPGSVYRIDPD-GKVTVV 129 (246)
T ss_dssp TTEEEEEEEEETTCSCTEEEEEEEE-TTS--EEEEEECCBCTTCGGSEEEEEEETT-SEEEEE
T ss_pred CCcEEEEeeccCCCcccCCCceEEEcCCC-CEEEEecCCCccccccccceEEECCC-CeEEEE
Confidence 3568887777422 23123335566676 67776432 358899998 666655
|
These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A .... |
| >TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain | Back alignment and domain information |
|---|
Probab=87.28 E-value=24 Score=32.40 Aligned_cols=204 Identities=13% Similarity=0.079 Sum_probs=99.5
Q ss_pred CccEEEEEeccccce-eecCCcCCCCCCCCcceEEEeeecCCCCeEEEEEEEEcCCCCccEEEEEEecCCcEE-EccCCC
Q 017748 116 RRNIMLLLNPLTKRH-RVLPTFYRDLSRCVPSLEGFGFDVGSGDFKLVKILAFGKPMNYTEVAVFSLRVNSWR-RIQDFP 193 (366)
Q Consensus 116 ~~~~~~V~NP~t~~~-~~LP~~~~~~~~~~~~~~~lg~d~~~~~ykvv~~~~~~~~~~~~~~~vyss~t~~W~-~~~~~~ 193 (366)
.+.+- |+++.|.+. .+||.++.++.........+++.+. +++-.|.- ......+.|.+..++.=- +++ .|
T Consensus 76 ~d~V~-v~D~~t~~~~~~i~~p~~p~~~~~~~~~~~~ls~d-gk~l~V~n-----~~p~~~V~VvD~~~~kvv~ei~-vp 147 (352)
T TIGR02658 76 TDYVE-VIDPQTHLPIADIELPEGPRFLVGTYPWMTSLTPD-NKTLLFYQ-----FSPSPAVGVVDLEGKAFVRMMD-VP 147 (352)
T ss_pred CCEEE-EEECccCcEEeEEccCCCchhhccCccceEEECCC-CCEEEEec-----CCCCCEEEEEECCCCcEEEEEe-CC
Confidence 34566 999999875 4576555433110112223344332 22333221 122456777777765432 222 12
Q ss_pred c--cee----cCCcceEECCcEEEEEeeCCCCCCCcEEEEEECCCceeeeeCCCCccCCCCceEEEEEECCeEEEEEeec
Q 017748 194 Y--FWV----TGTCSVFVNGALHWTAALNQDADRNDIIIAFDLKSEEFYQVPLPPIVGIEGYYILLEALGGCLCLLCKFD 267 (366)
Q Consensus 194 ~--~~~----~~~~~v~~~G~lYw~~~~~~~~~~~~~i~~fD~~~~~~~~i~lP~~~~~~~~~~~l~~~~g~L~l~~~~~ 267 (366)
- ..+ ......+.+|.+.-++...++.........||.+.. -...-|.....++ ...-+..+|.++++....
T Consensus 148 ~~~~vy~t~e~~~~~~~~Dg~~~~v~~d~~g~~~~~~~~vf~~~~~--~v~~rP~~~~~dg-~~~~vs~eG~V~~id~~~ 224 (352)
T TIGR02658 148 DCYHIFPTANDTFFMHCRDGSLAKVGYGTKGNPKIKPTEVFHPEDE--YLINHPAYSNKSG-RLVWPTYTGKIFQIDLSS 224 (352)
T ss_pred CCcEEEEecCCccEEEeecCceEEEEecCCCceEEeeeeeecCCcc--ccccCCceEcCCC-cEEEEecCCeEEEEecCC
Confidence 1 111 112245677877776665544322234444544321 1112331111111 223344458888887544
Q ss_pred CCCCCCcEEEEEeccCCC-CCceEEEEEeccCCCceeeEEEEecCCcEEEEEe----------eCCeEEEEeCCCCeEEE
Q 017748 268 DDDDDRPWDLWVMKEYGV-NDSWTKLATLLNVGGGNVKPLVYSRSEDKVLLHA----------VRGDLCWYDLERHRVRS 336 (366)
Q Consensus 268 ~~~~~~~l~iW~l~~~~~-~~~W~~~~~i~~~~~~~~~~~~~~~~g~~i~~~~----------~~~~~~~yd~~t~~~~~ 336 (366)
.. ......|.+...+. ++.|.. +...+++++.+|+++|+.. .++.+.++|.+|++...
T Consensus 225 ~~--~~~~~~~~~~~~~~~~~~wrP---------~g~q~ia~~~dg~~lyV~~~~~~~~thk~~~~~V~ViD~~t~kvi~ 293 (352)
T TIGR02658 225 GD--AKFLPAIEAFTEAEKADGWRP---------GGWQQVAYHRARDRIYLLADQRAKWTHKTASRFLFVVDAKTGKRLR 293 (352)
T ss_pred Cc--ceecceeeeccccccccccCC---------CcceeEEEcCCCCEEEEEecCCccccccCCCCEEEEEECCCCeEEE
Confidence 31 11344555433221 122321 2366788898888888843 12469999999998765
Q ss_pred eeeec
Q 017748 337 IVEID 341 (366)
Q Consensus 337 v~~~~ 341 (366)
...+.
T Consensus 294 ~i~vG 298 (352)
T TIGR02658 294 KIELG 298 (352)
T ss_pred EEeCC
Confidence 42443
|
This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome. |
| >PF13418 Kelch_4: Galactose oxidase, central domain; PDB: 2UVK_B | Back alignment and domain information |
|---|
Probab=86.70 E-value=1.2 Score=27.35 Aligned_cols=23 Identities=22% Similarity=0.713 Sum_probs=15.0
Q ss_pred CCccEEEEEEecCCcEEEccCCC
Q 017748 171 MNYTEVAVFSLRVNSWRRIQDFP 193 (366)
Q Consensus 171 ~~~~~~~vyss~t~~W~~~~~~~ 193 (366)
.....+++|+..+++|+.++.+|
T Consensus 26 ~~~~d~~~~d~~~~~W~~~~~~P 48 (49)
T PF13418_consen 26 SPLNDLWIFDIETNTWTRLPSMP 48 (49)
T ss_dssp EE---EEEEETTTTEEEE--SS-
T ss_pred cccCCEEEEECCCCEEEECCCCC
Confidence 45668899999999999997766
|
|
| >KOG4341 consensus F-box protein containing LRR [General function prediction only] | Back alignment and domain information |
|---|
Probab=86.68 E-value=0.22 Score=45.50 Aligned_cols=37 Identities=22% Similarity=0.328 Sum_probs=34.7
Q ss_pred CCcHHHHHHHHccCCcccceeeeccchhhhhhcCChh
Q 017748 6 QLPLDLIVDILIRLPVRSLARFRCVSRSFRSLIDGQD 42 (366)
Q Consensus 6 ~LP~dll~~IL~rLP~~~l~r~r~VcK~W~~li~s~~ 42 (366)
.||.|++..||+-|..++++|++.+|+.|+-+..|..
T Consensus 74 ~LPpEl~lkvFS~LDtksl~r~a~~c~~~n~~AlD~~ 110 (483)
T KOG4341|consen 74 SLPPELLLKVFSMLDTKSLCRAAQCCTMWNKLALDGS 110 (483)
T ss_pred cCCHHHHHHHHHHHhHHHHHHHHHHHHHhhhhhhccc
Confidence 5999999999999999999999999999999987754
|
|
| >COG3055 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=86.67 E-value=2.7 Score=37.77 Aligned_cols=90 Identities=14% Similarity=0.215 Sum_probs=61.2
Q ss_pred EEEEEEecC--CcEEEccCCCcceecCCcceEECCcEEEEEeeCCCCC----CCcEEEEEECCCceeeee--CCCCccCC
Q 017748 175 EVAVFSLRV--NSWRRIQDFPYFWVTGTCSVFVNGALHWTAALNQDAD----RNDIIIAFDLKSEEFYQV--PLPPIVGI 246 (366)
Q Consensus 175 ~~~vyss~t--~~W~~~~~~~~~~~~~~~~v~~~G~lYw~~~~~~~~~----~~~~i~~fD~~~~~~~~i--~lP~~~~~ 246 (366)
...+.++.. ..|+.++..|-........+.++|.||..+..+.... .-..+..||+.+++|+.+ ..|...
T Consensus 59 afy~ldL~~~~k~W~~~a~FpG~~rnqa~~a~~~~kLyvFgG~Gk~~~~~~~~~nd~Y~y~p~~nsW~kl~t~sP~gl-- 136 (381)
T COG3055 59 AFYVLDLKKPGKGWTKIADFPGGARNQAVAAVIGGKLYVFGGYGKSVSSSPQVFNDAYRYDPSTNSWHKLDTRSPTGL-- 136 (381)
T ss_pred cceehhhhcCCCCceEcccCCCcccccchheeeCCeEEEeeccccCCCCCceEeeeeEEecCCCChhheecccccccc--
Confidence 344555543 6899999887665555557899999999997764322 234789999999999888 566654
Q ss_pred CCceEEEEEECC-eEEEEEeecC
Q 017748 247 EGYYILLEALGG-CLCLLCKFDD 268 (366)
Q Consensus 247 ~~~~~~l~~~~g-~L~l~~~~~~ 268 (366)
....-...++ ++++....+.
T Consensus 137 --~G~~~~~~~~~~i~f~GGvn~ 157 (381)
T COG3055 137 --VGASTFSLNGTKIYFFGGVNQ 157 (381)
T ss_pred --ccceeEecCCceEEEEccccH
Confidence 2222334455 7888777543
|
|
| >PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3 | Back alignment and domain information |
|---|
Probab=86.16 E-value=27 Score=31.92 Aligned_cols=173 Identities=12% Similarity=0.152 Sum_probs=88.0
Q ss_pred cceEEEeeecCCCCeEEEEEEEEcCCCCccEEEEEEecCCc--EEEccCC--CcceecCCcceE-ECCcEEEEEeeCCCC
Q 017748 145 PSLEGFGFDVGSGDFKLVKILAFGKPMNYTEVAVFSLRVNS--WRRIQDF--PYFWVTGTCSVF-VNGALHWTAALNQDA 219 (366)
Q Consensus 145 ~~~~~lg~d~~~~~ykvv~~~~~~~~~~~~~~~vyss~t~~--W~~~~~~--~~~~~~~~~~v~-~~G~lYw~~~~~~~~ 219 (366)
.....+.++|.. +|-++.-. ....+.+|+...+. ....... +... .....++ -+|..-|+..+..
T Consensus 144 ~h~H~v~~~pdg-~~v~v~dl------G~D~v~~~~~~~~~~~l~~~~~~~~~~G~-GPRh~~f~pdg~~~Yv~~e~s-- 213 (345)
T PF10282_consen 144 PHPHQVVFSPDG-RFVYVPDL------GADRVYVYDIDDDTGKLTPVDSIKVPPGS-GPRHLAFSPDGKYAYVVNELS-- 213 (345)
T ss_dssp TCEEEEEE-TTS-SEEEEEET------TTTEEEEEEE-TTS-TEEEEEEEECSTTS-SEEEEEE-TTSSEEEEEETTT--
T ss_pred ccceeEEECCCC-CEEEEEec------CCCEEEEEEEeCCCceEEEeeccccccCC-CCcEEEEcCCcCEEEEecCCC--
Confidence 355667777753 34443311 14568888886654 5442211 1111 0011122 2565555544432
Q ss_pred CCCcEEEEEECC--Cceeeee----CCCCccCCCCceEEEEEE-CCeEEEEEeecCCCCCCcEEEEEeccCCCCCceEEE
Q 017748 220 DRNDIIIAFDLK--SEEFYQV----PLPPIVGIEGYYILLEAL-GGCLCLLCKFDDDDDDRPWDLWVMKEYGVNDSWTKL 292 (366)
Q Consensus 220 ~~~~~i~~fD~~--~~~~~~i----~lP~~~~~~~~~~~l~~~-~g~L~l~~~~~~~~~~~~l~iW~l~~~~~~~~W~~~ 292 (366)
..|.+|+.. +..+..+ .+|...........|... +|+..++...... .+.++.++... +.-..+
T Consensus 214 ---~~v~v~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~ispdg~~lyvsnr~~~----sI~vf~~d~~~--g~l~~~ 284 (345)
T PF10282_consen 214 ---NTVSVFDYDPSDGSLTEIQTISTLPEGFTGENAPAEIAISPDGRFLYVSNRGSN----SISVFDLDPAT--GTLTLV 284 (345)
T ss_dssp ---TEEEEEEEETTTTEEEEEEEEESCETTSCSSSSEEEEEE-TTSSEEEEEECTTT----EEEEEEECTTT--TTEEEE
T ss_pred ---CcEEEEeecccCCceeEEEEeeeccccccccCCceeEEEecCCCEEEEEeccCC----EEEEEEEecCC--CceEEE
Confidence 256666666 6666554 455533111133445544 4554444443332 89999996532 345556
Q ss_pred EEeccCCCceeeEEEEecCCcEEEEEee-CCeEEE--EeCCCCeEEEe
Q 017748 293 ATLLNVGGGNVKPLVYSRSEDKVLLHAV-RGDLCW--YDLERHRVRSI 337 (366)
Q Consensus 293 ~~i~~~~~~~~~~~~~~~~g~~i~~~~~-~~~~~~--yd~~t~~~~~v 337 (366)
..++... ...+-+.+.++|+.+++... ++.+.+ .|.++++++.+
T Consensus 285 ~~~~~~G-~~Pr~~~~s~~g~~l~Va~~~s~~v~vf~~d~~tG~l~~~ 331 (345)
T PF10282_consen 285 QTVPTGG-KFPRHFAFSPDGRYLYVANQDSNTVSVFDIDPDTGKLTPV 331 (345)
T ss_dssp EEEEESS-SSEEEEEE-TTSSEEEEEETTTTEEEEEEEETTTTEEEEE
T ss_pred EEEeCCC-CCccEEEEeCCCCEEEEEecCCCeEEEEEEeCCCCcEEEe
Confidence 6665422 12455666778877777653 344554 47789999988
|
1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H. |
| >KOG0294 consensus WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=85.42 E-value=26 Score=31.13 Aligned_cols=118 Identities=21% Similarity=0.247 Sum_probs=70.2
Q ss_pred CcceEECCcEEEEEeeCCCCCCCcEEEEEECCCceeeee-CCCCccCCCCceEEEEEECCeE---EEEEeecCCCCCCcE
Q 017748 200 TCSVFVNGALHWTAALNQDADRNDIIIAFDLKSEEFYQV-PLPPIVGIEGYYILLEALGGCL---CLLCKFDDDDDDRPW 275 (366)
Q Consensus 200 ~~~v~~~G~lYw~~~~~~~~~~~~~i~~fD~~~~~~~~i-~lP~~~~~~~~~~~l~~~~g~L---~l~~~~~~~~~~~~l 275 (366)
-.++.++|-.-.-+..+ ..|-.||+.+..=..+ .-|.+. .-.|-- .+.+ .++.+.++- .+
T Consensus 46 itavAVs~~~~aSGssD------etI~IYDm~k~~qlg~ll~Hags-----itaL~F-~~~~S~shLlS~sdDG----~i 109 (362)
T KOG0294|consen 46 ITALAVSGPYVASGSSD------ETIHIYDMRKRKQLGILLSHAGS-----ITALKF-YPPLSKSHLLSGSDDG----HI 109 (362)
T ss_pred eeEEEecceeEeccCCC------CcEEEEeccchhhhcceeccccc-----eEEEEe-cCCcchhheeeecCCC----cE
Confidence 34677887644433333 4799999987644333 333322 111111 1111 444444432 89
Q ss_pred EEEEeccCCCCCceEEEEEeccCCCceeeEEEEecCCcEEEEE-eeCCeEEEEeCCCCeEEEeeeec
Q 017748 276 DLWVMKEYGVNDSWTKLATLLNVGGGNVKPLVYSRSEDKVLLH-AVRGDLCWYDLERHRVRSIVEID 341 (366)
Q Consensus 276 ~iW~l~~~~~~~~W~~~~~i~~~~~~~~~~~~~~~~g~~i~~~-~~~~~~~~yd~~t~~~~~v~~~~ 341 (366)
.+|..+. |+.+.++..-.- -...+++++.| ++-+. ..|..+-.+|+-+++-..++.+.
T Consensus 110 ~iw~~~~------W~~~~slK~H~~-~Vt~lsiHPS~-KLALsVg~D~~lr~WNLV~Gr~a~v~~L~ 168 (362)
T KOG0294|consen 110 IIWRVGS------WELLKSLKAHKG-QVTDLSIHPSG-KLALSVGGDQVLRTWNLVRGRVAFVLNLK 168 (362)
T ss_pred EEEEcCC------eEEeeeeccccc-ccceeEecCCC-ceEEEEcCCceeeeehhhcCccceeeccC
Confidence 9998765 988888854321 16667888888 55554 45556888888888877776664
|
|
| >PF06433 Me-amine-dh_H: Methylamine dehydrogenase heavy chain (MADH); InterPro: IPR009451 Methylamine dehydrogenase (1 | Back alignment and domain information |
|---|
Probab=85.21 E-value=13 Score=33.61 Aligned_cols=125 Identities=17% Similarity=0.221 Sum_probs=68.9
Q ss_pred CcceEEC--CcEEEEEeeCCCCCCCcEEEEEECCCceeeee---CCCCcc-CCCCce---EEEEEE---CCeEEEEEeec
Q 017748 200 TCSVFVN--GALHWTAALNQDADRNDIIIAFDLKSEEFYQV---PLPPIV-GIEGYY---ILLEAL---GGCLCLLCKFD 267 (366)
Q Consensus 200 ~~~v~~~--G~lYw~~~~~~~~~~~~~i~~fD~~~~~~~~i---~lP~~~-~~~~~~---~~l~~~---~g~L~l~~~~~ 267 (366)
..+++.+ |.+||++..+ .|...|++.+.-... .+-... ....+. ..+..+ .|+||++....
T Consensus 187 ~~~~~~~~~~~~~F~Sy~G-------~v~~~dlsg~~~~~~~~~~~~t~~e~~~~WrPGG~Q~~A~~~~~~rlyvLMh~g 259 (342)
T PF06433_consen 187 EHPAYSRDGGRLYFVSYEG-------NVYSADLSGDSAKFGKPWSLLTDAEKADGWRPGGWQLIAYHAASGRLYVLMHQG 259 (342)
T ss_dssp S--EEETTTTEEEEEBTTS-------EEEEEEETTSSEEEEEEEESS-HHHHHTTEEE-SSS-EEEETTTTEEEEEEEE-
T ss_pred cccceECCCCeEEEEecCC-------EEEEEeccCCcccccCcccccCccccccCcCCcceeeeeeccccCeEEEEecCC
Confidence 3456544 6799988876 799999998754333 111111 011121 123333 58999875432
Q ss_pred CCC--CCCcEEEEEeccCCCCCceEEEEEeccCCCceeeEEEEecCCcEEEEEe-e-CCeEEEEeCCCCeEEEe
Q 017748 268 DDD--DDRPWDLWVMKEYGVNDSWTKLATLLNVGGGNVKPLVYSRSEDKVLLHA-V-RGDLCWYDLERHRVRSI 337 (366)
Q Consensus 268 ~~~--~~~~l~iW~l~~~~~~~~W~~~~~i~~~~~~~~~~~~~~~~g~~i~~~~-~-~~~~~~yd~~t~~~~~v 337 (366)
... ..-.-+||+++-. +=.++.++++... ..-+++..+..=+++.. . ++.+++||..|++....
T Consensus 260 ~~gsHKdpgteVWv~D~~----t~krv~Ri~l~~~--~~Si~Vsqd~~P~L~~~~~~~~~l~v~D~~tGk~~~~ 327 (342)
T PF06433_consen 260 GEGSHKDPGTEVWVYDLK----THKRVARIPLEHP--IDSIAVSQDDKPLLYALSAGDGTLDVYDAATGKLVRS 327 (342)
T ss_dssp -TT-TTS-EEEEEEEETT----TTEEEEEEEEEEE--ESEEEEESSSS-EEEEEETTTTEEEEEETTT--EEEE
T ss_pred CCCCccCCceEEEEEECC----CCeEEEEEeCCCc--cceEEEccCCCcEEEEEcCCCCeEEEEeCcCCcEEee
Confidence 210 1115789999973 2456777776432 33467777665455543 2 45699999999987644
|
4.99.3 from EC) is a periplasmic quinoprotein found in several methyltrophic bacteria []. It is induced when grown on methylamine as a carbon source MADH and catalyses the oxidative deamination of amines to their corresponding aldehydes. The redox cofactor of this enzyme is tryptophan tryptophylquinone (TTQ). Electrons derived from the oxidation of methylamine are passed to an electron acceptor, which is usually the blue-copper protein amicyanin (IPR002386 from INTERPRO). |
| >KOG4152 consensus Host cell transcription factor HCFC1 [Cell cycle control, cell division, chromosome partitioning; Transcription] | Back alignment and domain information |
|---|
Probab=83.50 E-value=12 Score=35.56 Aligned_cols=127 Identities=11% Similarity=0.120 Sum_probs=78.1
Q ss_pred ecCCCCeEEEEEEEEcCCCCccEEEEEEecCCcEEEcc-----CCCcceecCCcceEECCcEEEEEeeCC--------CC
Q 017748 153 DVGSGDFKLVKILAFGKPMNYTEVAVFSLRVNSWRRIQ-----DFPYFWVTGTCSVFVNGALHWTAALNQ--------DA 219 (366)
Q Consensus 153 d~~~~~ykvv~~~~~~~~~~~~~~~vyss~t~~W~~~~-----~~~~~~~~~~~~v~~~G~lYw~~~~~~--------~~ 219 (366)
...++.-|++..... .+-.-...+..++++-+|.... .+|+.. .+++.+++++|..++.-. .+
T Consensus 210 eKDs~~skmvvyGGM-~G~RLgDLW~Ldl~Tl~W~kp~~~G~~PlPRSL---Hsa~~IGnKMyvfGGWVPl~~~~~~~~~ 285 (830)
T KOG4152|consen 210 EKDSKKSKMVVYGGM-SGCRLGDLWTLDLDTLTWNKPSLSGVAPLPRSL---HSATTIGNKMYVFGGWVPLVMDDVKVAT 285 (830)
T ss_pred eccCCcceEEEEccc-ccccccceeEEecceeecccccccCCCCCCccc---ccceeecceeEEecceeeeecccccccc
Confidence 445556676665431 1223456788999999997653 344432 457889999997764321 01
Q ss_pred ---CC--CcEEEEEECCCceeeeeCCCCccCC----CCceEEEEEECCeEEEEEeecCC-----CCCCcEEEEEeccC
Q 017748 220 ---DR--NDIIIAFDLKSEEFYQVPLPPIVGI----EGYYILLEALGGCLCLLCKFDDD-----DDDRPWDLWVMKEY 283 (366)
Q Consensus 220 ---~~--~~~i~~fD~~~~~~~~i~lP~~~~~----~~~~~~l~~~~g~L~l~~~~~~~-----~~~~~l~iW~l~~~ 283 (366)
.+ +..+-++|+.+..|..+.+-...++ .+..-+-+..+.+||+-.+.++. +..+--++|-||..
T Consensus 286 hekEWkCTssl~clNldt~~W~tl~~d~~ed~tiPR~RAGHCAvAigtRlYiWSGRDGYrKAwnnQVCCkDlWyLdTe 363 (830)
T KOG4152|consen 286 HEKEWKCTSSLACLNLDTMAWETLLMDTLEDNTIPRARAGHCAVAIGTRLYIWSGRDGYRKAWNNQVCCKDLWYLDTE 363 (830)
T ss_pred ccceeeeccceeeeeecchheeeeeeccccccccccccccceeEEeccEEEEEeccchhhHhhccccchhhhhhhccc
Confidence 11 2378899999999988754332211 11223456678999998887652 34445577887754
|
|
| >PF05096 Glu_cyclase_2: Glutamine cyclotransferase; InterPro: IPR007788 This family of enzymes 2 | Back alignment and domain information |
|---|
Probab=83.12 E-value=31 Score=30.11 Aligned_cols=113 Identities=18% Similarity=0.231 Sum_probs=66.4
Q ss_pred ECCcEEEEEeeCCCCCCCcEEEEEECCCceee-eeCCCCccCCCCceEEEEEECCeEEEEEeecCCCCCCcEEEEEeccC
Q 017748 205 VNGALHWTAALNQDADRNDIIIAFDLKSEEFY-QVPLPPIVGIEGYYILLEALGGCLCLLCKFDDDDDDRPWDLWVMKEY 283 (366)
Q Consensus 205 ~~G~lYw~~~~~~~~~~~~~i~~fD~~~~~~~-~i~lP~~~~~~~~~~~l~~~~g~L~l~~~~~~~~~~~~l~iW~l~~~ 283 (366)
-+|.+|=-++... .-.|..+|+++++.. ..++|... +.--++..+++|+.++=.+. ..-++-.+
T Consensus 54 ~~g~LyESTG~yG----~S~l~~~d~~tg~~~~~~~l~~~~----FgEGit~~~d~l~qLTWk~~-----~~f~yd~~-- 118 (264)
T PF05096_consen 54 DDGTLYESTGLYG----QSSLRKVDLETGKVLQSVPLPPRY----FGEGITILGDKLYQLTWKEG-----TGFVYDPN-- 118 (264)
T ss_dssp ETTEEEEEECSTT----EEEEEEEETTTSSEEEEEE-TTT------EEEEEEETTEEEEEESSSS-----EEEEEETT--
T ss_pred CCCEEEEeCCCCC----cEEEEEEECCCCcEEEEEECCccc----cceeEEEECCEEEEEEecCC-----eEEEEccc--
Confidence 3567765544332 248999999998874 56999876 55567888999999887665 33333222
Q ss_pred CCCCceEEEEEeccCCCceeeEEEEecCCcEEEEEeeCCeEEEEeCCCCeEEEeeee
Q 017748 284 GVNDSWTKLATLLNVGGGNVKPLVYSRSEDKVLLHAVRGDLCWYDLERHRVRSIVEI 340 (366)
Q Consensus 284 ~~~~~W~~~~~i~~~~~~~~~~~~~~~~g~~i~~~~~~~~~~~yd~~t~~~~~v~~~ 340 (366)
...++.+++...- --|.+.+|+.+++.....++...|+++-+..+-..+
T Consensus 119 ----tl~~~~~~~y~~E----GWGLt~dg~~Li~SDGS~~L~~~dP~~f~~~~~i~V 167 (264)
T PF05096_consen 119 ----TLKKIGTFPYPGE----GWGLTSDGKRLIMSDGSSRLYFLDPETFKEVRTIQV 167 (264)
T ss_dssp ----TTEEEEEEE-SSS------EEEECSSCEEEE-SSSEEEEE-TTT-SEEEEEE-
T ss_pred ----cceEEEEEecCCc----ceEEEcCCCEEEEECCccceEEECCcccceEEEEEE
Confidence 3555655554321 123335665777776667899999998765433244
|
3.2.5 from EC catalyse the cyclization of free L-glutamine and N-terminal glutaminyl residues in proteins to pyroglutamate (5-oxoproline) and pyroglutamyl residues respectively []. This family includes plant and bacterial enzymes and seems unrelated to the mammalian enzymes.; PDB: 3NOK_B 2FAW_A 2IWA_A 3NOM_A 3NOL_A 3MBR_X. |
| >smart00564 PQQ beta-propeller repeat | Back alignment and domain information |
|---|
Probab=82.11 E-value=4.7 Score=22.06 Aligned_cols=24 Identities=17% Similarity=0.164 Sum_probs=20.6
Q ss_pred EEEEEeeCCeEEEEeCCCCeEEEe
Q 017748 314 KVLLHAVRGDLCWYDLERHRVRSI 337 (366)
Q Consensus 314 ~i~~~~~~~~~~~yd~~t~~~~~v 337 (366)
.+++...++.++++|.++++..+.
T Consensus 8 ~v~~~~~~g~l~a~d~~~G~~~W~ 31 (33)
T smart00564 8 TVYVGSTDGTLYALDAKTGEILWT 31 (33)
T ss_pred EEEEEcCCCEEEEEEcccCcEEEE
Confidence 788888788899999999987764
|
Beta-propeller repeat occurring in enzymes with pyrrolo-quinoline quinone (PQQ) as cofactor, in Ire1p-like Ser/Thr kinases, and in prokaryotic dehydrogenases. |
| >COG2706 3-carboxymuconate cyclase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=81.82 E-value=40 Score=30.47 Aligned_cols=119 Identities=13% Similarity=0.098 Sum_probs=70.1
Q ss_pred CCcEEEEEeeCCCCCCCcEEEEEECCCceeeee---CCCCccCCCCceEEEEEE-CCeEEEEEeecCCCCCCcEEEEEec
Q 017748 206 NGALHWTAALNQDADRNDIIIAFDLKSEEFYQV---PLPPIVGIEGYYILLEAL-GGCLCLLCKFDDDDDDRPWDLWVMK 281 (366)
Q Consensus 206 ~G~lYw~~~~~~~~~~~~~i~~fD~~~~~~~~i---~lP~~~~~~~~~~~l~~~-~g~L~l~~~~~~~~~~~~l~iW~l~ 281 (366)
+|.+-+...-+. ..|..||++.++.... .++++. ....|+-- +|+++++..+-.. .+.+|..+
T Consensus 155 ~~~~l~v~DLG~-----Dri~~y~~~dg~L~~~~~~~v~~G~----GPRHi~FHpn~k~aY~v~EL~s----tV~v~~y~ 221 (346)
T COG2706 155 DGRYLVVPDLGT-----DRIFLYDLDDGKLTPADPAEVKPGA----GPRHIVFHPNGKYAYLVNELNS----TVDVLEYN 221 (346)
T ss_pred CCCEEEEeecCC-----ceEEEEEcccCccccccccccCCCC----CcceEEEcCCCcEEEEEeccCC----EEEEEEEc
Confidence 355555555543 4677777775555432 444443 12233332 5777766555444 89999998
Q ss_pred cCCCCCceEEEEEeccCCC---c--eeeEEEEecCCcEEEEEeeCC---eEEEEeCCCCeEEEeeee
Q 017748 282 EYGVNDSWTKLATLLNVGG---G--NVKPLVYSRSEDKVLLHAVRG---DLCWYDLERHRVRSIVEI 340 (366)
Q Consensus 282 ~~~~~~~W~~~~~i~~~~~---~--~~~~~~~~~~g~~i~~~~~~~---~~~~yd~~t~~~~~v~~~ 340 (366)
.. .++-.++.++...+- + ...-+.+..+|..++....+. -++..|+.+++++-+ +.
T Consensus 222 ~~--~g~~~~lQ~i~tlP~dF~g~~~~aaIhis~dGrFLYasNRg~dsI~~f~V~~~~g~L~~~-~~ 285 (346)
T COG2706 222 PA--VGKFEELQTIDTLPEDFTGTNWAAAIHISPDGRFLYASNRGHDSIAVFSVDPDGGKLELV-GI 285 (346)
T ss_pred CC--CceEEEeeeeccCccccCCCCceeEEEECCCCCEEEEecCCCCeEEEEEEcCCCCEEEEE-EE
Confidence 85 355777776654322 1 244455667884444443322 288889999998877 54
|
|
| >PF13415 Kelch_3: Galactose oxidase, central domain | Back alignment and domain information |
|---|
Probab=81.33 E-value=2.1 Score=26.39 Aligned_cols=26 Identities=38% Similarity=0.643 Sum_probs=20.8
Q ss_pred CCccEEEEEEecCCcEEEccCCCcce
Q 017748 171 MNYTEVAVFSLRVNSWRRIQDFPYFW 196 (366)
Q Consensus 171 ~~~~~~~vyss~t~~W~~~~~~~~~~ 196 (366)
.....+++|+..+++|+.++.+|...
T Consensus 16 ~~~nd~~~~~~~~~~W~~~~~~P~~R 41 (49)
T PF13415_consen 16 TRLNDVWVFDLDTNTWTRIGDLPPPR 41 (49)
T ss_pred CEecCEEEEECCCCEEEECCCCCCCc
Confidence 34567899999999999997776543
|
|
| >PRK04043 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=81.16 E-value=50 Score=31.19 Aligned_cols=98 Identities=9% Similarity=0.136 Sum_probs=59.5
Q ss_pred EEEEEECCCceeeee-CCCCccCCCCceEEEEEECC-eEEEEEeecCCCCCCcEEEEEeccCCCCCceEEEEEeccCCCc
Q 017748 224 IIIAFDLKSEEFYQV-PLPPIVGIEGYYILLEALGG-CLCLLCKFDDDDDDRPWDLWVMKEYGVNDSWTKLATLLNVGGG 301 (366)
Q Consensus 224 ~i~~fD~~~~~~~~i-~lP~~~~~~~~~~~l~~~~g-~L~l~~~~~~~~~~~~l~iW~l~~~~~~~~W~~~~~i~~~~~~ 301 (366)
.|..+|+.+++-..+ ..+... ..... .-+| +|.+...... .-+||.++-.+ +.+.++..-+..
T Consensus 214 ~Iyv~dl~tg~~~~lt~~~g~~----~~~~~-SPDG~~la~~~~~~g-----~~~Iy~~dl~~--g~~~~LT~~~~~--- 278 (419)
T PRK04043 214 TLYKYNLYTGKKEKIASSQGML----VVSDV-SKDGSKLLLTMAPKG-----QPDIYLYDTNT--KTLTQITNYPGI--- 278 (419)
T ss_pred EEEEEECCCCcEEEEecCCCcE----EeeEE-CCCCCEEEEEEccCC-----CcEEEEEECCC--CcEEEcccCCCc---
Confidence 799999998877666 333221 11222 2245 5655544332 57899888533 345554332211
Q ss_pred eeeEEEEecCCcEEEEEeeCC---eEEEEeCCCCeEEEe
Q 017748 302 NVKPLVYSRSEDKVLLHAVRG---DLCWYDLERHRVRSI 337 (366)
Q Consensus 302 ~~~~~~~~~~g~~i~~~~~~~---~~~~yd~~t~~~~~v 337 (366)
.....+.++|+.|++..+.. .++.+|+.+++.+++
T Consensus 279 -d~~p~~SPDG~~I~F~Sdr~g~~~Iy~~dl~~g~~~rl 316 (419)
T PRK04043 279 -DVNGNFVEDDKRIVFVSDRLGYPNIFMKKLNSGSVEQV 316 (419)
T ss_pred -cCccEECCCCCEEEEEECCCCCceEEEEECCCCCeEeC
Confidence 22234667888899987532 599999999999888
|
|
| >PRK11028 6-phosphogluconolactonase; Provisional | Back alignment and domain information |
|---|
Probab=80.01 E-value=45 Score=30.00 Aligned_cols=119 Identities=12% Similarity=0.060 Sum_probs=63.5
Q ss_pred ECCcEEEEEeeCCCCCCCcEEEEEECC--Cceeeee----CCCCccCCCCceEEEEEE-CCe-EEEEEeecCCCCCCcEE
Q 017748 205 VNGALHWTAALNQDADRNDIIIAFDLK--SEEFYQV----PLPPIVGIEGYYILLEAL-GGC-LCLLCKFDDDDDDRPWD 276 (366)
Q Consensus 205 ~~G~lYw~~~~~~~~~~~~~i~~fD~~--~~~~~~i----~lP~~~~~~~~~~~l~~~-~g~-L~l~~~~~~~~~~~~l~ 276 (366)
=+|...|...... ..|.+||+. ++++..+ .+|...........+... +|+ ||+. ..... .+.
T Consensus 184 pdg~~lyv~~~~~-----~~v~v~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~i~~~pdg~~lyv~-~~~~~----~I~ 253 (330)
T PRK11028 184 PNQQYAYCVNELN-----SSVDVWQLKDPHGEIECVQTLDMMPADFSDTRWAADIHITPDGRHLYAC-DRTAS----LIS 253 (330)
T ss_pred CCCCEEEEEecCC-----CEEEEEEEeCCCCCEEEEEEEecCCCcCCCCccceeEEECCCCCEEEEe-cCCCC----eEE
Confidence 3456555554432 368888876 3444333 244432111111122222 454 5554 32222 899
Q ss_pred EEEeccCCCCCceEEEEEeccCCCceeeEEEEecCCcEEEEEee-CCeEEEE--eCCCCeEEEe
Q 017748 277 LWVMKEYGVNDSWTKLATLLNVGGGNVKPLVYSRSEDKVLLHAV-RGDLCWY--DLERHRVRSI 337 (366)
Q Consensus 277 iW~l~~~~~~~~W~~~~~i~~~~~~~~~~~~~~~~g~~i~~~~~-~~~~~~y--d~~t~~~~~v 337 (366)
+|.++..+ ..+..+..++.... .+-+.+.++|..|+.... ++.+..| |.+++.++.+
T Consensus 254 v~~i~~~~--~~~~~~~~~~~~~~--p~~~~~~~dg~~l~va~~~~~~v~v~~~~~~~g~l~~~ 313 (330)
T PRK11028 254 VFSVSEDG--SVLSFEGHQPTETQ--PRGFNIDHSGKYLIAAGQKSHHISVYEIDGETGLLTEL 313 (330)
T ss_pred EEEEeCCC--CeEEEeEEEecccc--CCceEECCCCCEEEEEEccCCcEEEEEEcCCCCcEEEc
Confidence 99987643 34666666654322 344567788867776654 4456666 5567888777
|
|
Homologous Structure Templates
Structure Templates Detected by BLAST
Original result of BLAST against Protein Data Bank
No homologous structure with e-value below 0.005
Structure Templates Detected by RPS-BLAST
Original result of RPS-BLAST against PDB70 database
| ID | Alignment Graph | Length |
Definition |
E-value |
| Query | 366 | |||
| 2e31_A | 297 | FBS1, F-box only protein 2; ubiquitin, SCF, ubiqui | 4e-06 | |
| 1vt4_I | 1221 | APAF-1 related killer DARK; drosophila apoptosome, | 3e-04 |
| >2e31_A FBS1, F-box only protein 2; ubiquitin, SCF, ubiquitin ligase, FBS1; 2.40A {Mus musculus} PDB: 2e32_A Length = 297 | Back alignment and structure |
|---|
Score = 47.2 bits (111), Expect = 4e-06
Identities = 16/82 (19%), Positives = 28/82 (34%), Gaps = 4/82 (4%)
Query: 6 QLPLDLIVDILIRLPVRSLARF-RCVSRSFRSLIDGQDFVNRYVNHSIETNSNLGLFVSV 64
+LP L++ +L LP L + R V ++ L+DG
Sbjct: 53 ELPEPLLLRVLAELPATELVQACRLVCLRWKELVDGAPLWLLKCQQEGLVPEGS---ADE 109
Query: 65 ENSKWKRRYYSLSFDQYAFDNC 86
E W++ Y+ + N
Sbjct: 110 ERDHWQQFYFLSKRRRNLLRNP 131
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 41.8 bits (97), Expect = 3e-04
Identities = 42/280 (15%), Positives = 75/280 (26%), Gaps = 71/280 (25%)
Query: 13 VDILIRLPVRSLARFRCVSRSFRSLID-----GQDFVNRYVNHSIETNSNLGLFVSVENS 67
+D +I VS + R L ++ V ++V + N F+ S
Sbjct: 51 IDHIIMSKDA-------VSGTLR-LFWTLLSKQEEMVQKFVEEVLRINYK---FLM---S 96
Query: 68 KWKRRYYSLSFDQYAFDNCLEIDLPLMKNCKFGFIIGSCNGLLALEDSRRNIMLLLNPLT 127
K S + + + N D++
Sbjct: 97 PIKTEQRQPSMMTRMYIEQRDR----LYN-----------------DNQ--------VFA 127
Query: 128 KRHRVLPTFYRDLSRCVPSLEGFGFDVGSGDFKLVKILAFGKPMNYTEVAVFSLRVNSWR 187
K + Y L + + L + G L GK T VA+ +
Sbjct: 128 KYNVSRLQPYLKLRQALLELRPAKNVLIDGV------LGSGK----TWVALDVCLSYKVQ 177
Query: 188 RIQDFPYFWVT-GTCSVFVNGALHWTAALNQDADRNDIIIAFDLKSEEFYQVPLPPIVGI 246
DF FW+ C+ L L D N + +S+ + L
Sbjct: 178 CKMDFKIFWLNLKNCNS-PETVLEMLQKLLYQIDPN-----WTSRSDHSSNIKLRIHSIQ 231
Query: 247 EGYYILLEALGGCLCLLCKFDDDDDDRPWDLWVMKEYGVN 286
LL++ CLL + + + ++
Sbjct: 232 AELRRLLKSKPYENCLLV-LLN-----VQNAKAWNAFNLS 265
|
Structure Templates Detected by HHsearch
Original result of HHsearch against PDB70 database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 366 | |||
| 2woz_A | 318 | Kelch repeat and BTB domain-containing protein 10; | 99.55 | |
| 3ii7_A | 306 | Kelch-like protein 7; protein-binding, kelch-repea | 99.55 | |
| 2xn4_A | 302 | Kelch-like protein 2; structural protein, cytoskel | 99.55 | |
| 1zgk_A | 308 | Kelch-like ECH-associated protein 1; beta-propelle | 99.55 | |
| 4asc_A | 315 | Kelch repeat and BTB domain-containing protein 5; | 99.54 | |
| 2vpj_A | 301 | Kelch-like protein 12; adaptor protein, WNT signal | 99.54 | |
| 3ii7_A | 306 | Kelch-like protein 7; protein-binding, kelch-repea | 99.5 | |
| 2vpj_A | 301 | Kelch-like protein 12; adaptor protein, WNT signal | 99.45 | |
| 2xn4_A | 302 | Kelch-like protein 2; structural protein, cytoskel | 99.45 | |
| 1zgk_A | 308 | Kelch-like ECH-associated protein 1; beta-propelle | 99.4 | |
| 4asc_A | 315 | Kelch repeat and BTB domain-containing protein 5; | 99.4 | |
| 2uvk_A | 357 | YJHT; unknown function, hypothetical protein, sial | 99.35 | |
| 2woz_A | 318 | Kelch repeat and BTB domain-containing protein 10; | 99.34 | |
| 2uvk_A | 357 | YJHT; unknown function, hypothetical protein, sial | 99.22 | |
| 2zwa_A | 695 | Leucine carboxyl methyltransferase 2; HET: SAH CIT | 99.17 | |
| 2e31_A | 297 | FBS1, F-box only protein 2; ubiquitin, SCF, ubiqui | 99.15 | |
| 1fs1_A | 53 | SKP2 F-BOX, cyclin A/CDK2-associated P19; F-BOX, L | 99.15 | |
| 2ovr_B | 445 | FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 | 99.1 | |
| 3v7d_B | 464 | Cell division control protein 4; WD 40 domain, pho | 99.0 | |
| 1p22_A | 435 | F-BOX/WD-repeat protein 1A; ubiquitination, degrad | 98.91 | |
| 1k3i_A | 656 | Galactose oxidase precursor; blade beta propeller, | 98.79 | |
| 2zwa_A | 695 | Leucine carboxyl methyltransferase 2; HET: SAH CIT | 98.73 | |
| 1k3i_A | 656 | Galactose oxidase precursor; blade beta propeller, | 98.44 | |
| 3l2o_B | 312 | F-box only protein 4; small G protein fold, UBL co | 98.09 | |
| 2ast_B | 336 | S-phase kinase-associated protein 2; SCF-substrate | 97.66 | |
| 2p1m_B | 594 | Transport inhibitor response 1 protein; F-BOX, leu | 97.0 | |
| 3ei3_B | 383 | DNA damage-binding protein 2; UV-damage, DDB, nucl | 96.71 | |
| 3dsm_A | 328 | Uncharacterized protein bacuni_02894; seven_blated | 96.7 | |
| 3ogk_B | 592 | Coronatine-insensitive protein 1; leucine rich rep | 96.53 | |
| 3mbr_X | 243 | Glutamine cyclotransferase; beta-propeller; 1.44A | 96.24 | |
| 3q7m_A | 376 | Lipoprotein YFGL, BAMB; beta-propeller, BAM comple | 95.96 | |
| 3jro_A | 753 | Fusion protein of protein transport protein SEC13 | 95.5 | |
| 2iwa_A | 266 | Glutamine cyclotransferase; pyroglutamate, acyltra | 95.5 | |
| 1p22_A | 435 | F-BOX/WD-repeat protein 1A; ubiquitination, degrad | 95.42 | |
| 3jrp_A | 379 | Fusion protein of protein transport protein SEC13 | 95.41 | |
| 3jrp_A | 379 | Fusion protein of protein transport protein SEC13 | 95.38 | |
| 3nol_A | 262 | Glutamine cyclotransferase; beta-propeller, glutam | 95.37 | |
| 1l0q_A | 391 | Surface layer protein; SLP, S-layer, 7-bladed beta | 95.25 | |
| 1gxr_A | 337 | ESG1, transducin-like enhancer protein 1; transcri | 95.15 | |
| 1l0q_A | 391 | Surface layer protein; SLP, S-layer, 7-bladed beta | 95.13 | |
| 3bws_A | 433 | Protein LP49; two-domain, immunoglobulin-like, 7-b | 94.97 | |
| 4e54_B | 435 | DNA damage-binding protein 2; beta barrel, double | 94.92 | |
| 3dwl_C | 377 | Actin-related protein 2/3 complex subunit 1; prope | 94.78 | |
| 3nok_A | 268 | Glutaminyl cyclase; beta-propeller, cyclotransfera | 94.74 | |
| 3q7m_A | 376 | Lipoprotein YFGL, BAMB; beta-propeller, BAM comple | 94.74 | |
| 3u4y_A | 331 | Uncharacterized protein; structural genomics, PSI- | 94.16 | |
| 2z2n_A | 299 | Virginiamycin B lyase; seven-bladed beta-propeller | 94.07 | |
| 4aez_A | 401 | CDC20, WD repeat-containing protein SLP1; cell cyc | 94.01 | |
| 3scy_A | 361 | Hypothetical bacterial 6-phosphogluconolactonase; | 93.64 | |
| 1yfq_A | 342 | Cell cycle arrest protein BUB3; WD repeat WD40 rep | 93.52 | |
| 3hfq_A | 347 | Uncharacterized protein LP_2219; Q88V64_lacpl, NES | 92.91 | |
| 1gxr_A | 337 | ESG1, transducin-like enhancer protein 1; transcri | 92.56 | |
| 3g4e_A | 297 | Regucalcin; six bladed beta-propeller, gluconolcat | 92.47 | |
| 3bws_A | 433 | Protein LP49; two-domain, immunoglobulin-like, 7-b | 92.44 | |
| 3dsm_A | 328 | Uncharacterized protein bacuni_02894; seven_blated | 92.42 | |
| 3sjl_D | 386 | Methylamine dehydrogenase heavy chain; MAUG, C-hem | 92.34 | |
| 1ri6_A | 343 | Putative isomerase YBHE; 7-bladed propeller, enzym | 92.3 | |
| 3v65_B | 386 | Low-density lipoprotein receptor-related protein; | 92.25 | |
| 1k8k_C | 372 | P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta- | 92.01 | |
| 3m0c_C | 791 | LDL receptor, low-density lipoprotein receptor; pr | 91.68 | |
| 2pm9_A | 416 | Protein WEB1, protein transport protein SEC31; bet | 91.54 | |
| 1ri6_A | 343 | Putative isomerase YBHE; 7-bladed propeller, enzym | 91.54 | |
| 4g56_B | 357 | MGC81050 protein; protein arginine methyltransfera | 91.17 | |
| 4gqb_B | 344 | Methylosome protein 50; TIM barrel, beta-propeller | 91.16 | |
| 3odt_A | 313 | Protein DOA1; ubiquitin, nuclear protein; HET: MSE | 90.73 | |
| 3mkq_A | 814 | Coatomer beta'-subunit; beta-propeller, alpha-sole | 90.61 | |
| 2ovr_B | 445 | FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 | 90.5 | |
| 4g56_B | 357 | MGC81050 protein; protein arginine methyltransfera | 90.36 | |
| 2aq5_A | 402 | Coronin-1A; WD40 repeat, 7-bladed beta-propeller, | 90.03 | |
| 1yr2_A | 741 | Prolyl oligopeptidase; prolyl endopeptidase, mecha | 89.88 | |
| 3v9f_A | 781 | Two-component system sensor histidine kinase/RESP | 89.74 | |
| 4aow_A | 340 | Guanine nucleotide-binding protein subunit beta-2; | 89.48 | |
| 4gga_A | 420 | P55CDC, cell division cycle protein 20 homolog; ce | 89.45 | |
| 1k8k_C | 372 | P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta- | 89.36 | |
| 3nol_A | 262 | Glutamine cyclotransferase; beta-propeller, glutam | 89.28 | |
| 2bkl_A | 695 | Prolyl endopeptidase; mechanistic study, celiac sp | 89.22 | |
| 1r5m_A | 425 | SIR4-interacting protein SIF2; transcription corep | 89.11 | |
| 1nir_A | 543 | Nitrite reductase; hemoprotein, denitrification, d | 88.98 | |
| 4a11_B | 408 | DNA excision repair protein ERCC-8; DNA binding pr | 88.97 | |
| 3vgz_A | 353 | Uncharacterized protein YNCE; beta-propeller, prot | 88.9 | |
| 3e5z_A | 296 | Putative gluconolactonase; X-RAY NESG Q9RXN3 gluco | 88.78 | |
| 3v64_C | 349 | Agrin; beta propeller, laminin-G, signaling, prote | 88.77 | |
| 3v7d_B | 464 | Cell division control protein 4; WD 40 domain, pho | 88.57 | |
| 1nir_A | 543 | Nitrite reductase; hemoprotein, denitrification, d | 88.51 | |
| 1npe_A | 267 | Nidogen, entactin; glycoprotein, basement membrane | 88.48 | |
| 3fm0_A | 345 | Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD r | 88.34 | |
| 3fm0_A | 345 | Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD r | 88.17 | |
| 2pm7_B | 297 | Protein transport protein SEC13, protein transport | 88.16 | |
| 2ad6_A | 571 | Methanol dehydrogenase subunit 1; PQQ configuratio | 88.08 | |
| 4ery_A | 312 | WD repeat-containing protein 5; WD40, WIN motif, b | 88.04 | |
| 3lrv_A | 343 | PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiqu | 88.04 | |
| 2mad_H | 373 | Methylamine dehydrogenase (heavy subunit); oxidore | 88.01 | |
| 4aez_A | 401 | CDC20, WD repeat-containing protein SLP1; cell cyc | 87.99 | |
| 1n7d_A | 699 | LDL receptor, low-density lipoprotein receptor; fa | 87.62 | |
| 2p4o_A | 306 | Hypothetical protein; putative lactonase, structur | 87.61 | |
| 2ojh_A | 297 | Uncharacterized protein ATU1656/AGR_C_3050; TOLB, | 87.59 | |
| 3hrp_A | 409 | Uncharacterized protein; NP_812590.1, structural g | 87.58 | |
| 1sq9_A | 397 | Antiviral protein SKI8; WD repeat, beta-transducin | 87.54 | |
| 4e54_B | 435 | DNA damage-binding protein 2; beta barrel, double | 87.45 | |
| 2oiz_A | 361 | Aromatic amine dehydrogenase, large subunit; oxido | 86.88 | |
| 3f3f_A | 351 | Nucleoporin SEH1; structural protein, protein comp | 86.38 | |
| 1q7f_A | 286 | NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL | 86.28 | |
| 3bg1_A | 316 | Protein SEC13 homolog; NPC, transport, WD repeat, | 85.96 | |
| 3iuj_A | 693 | Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas | 85.55 | |
| 2dg1_A | 333 | DRP35, lactonase; beta propeller, hydrolase; 1.72A | 85.49 | |
| 3jro_A | 753 | Fusion protein of protein transport protein SEC13 | 85.19 | |
| 1kv9_A | 668 | Type II quinohemoprotein alcohol dehydrogenase; el | 85.12 | |
| 4a11_B | 408 | DNA excision repair protein ERCC-8; DNA binding pr | 84.76 | |
| 2pm9_A | 416 | Protein WEB1, protein transport protein SEC31; bet | 84.64 | |
| 1yiq_A | 689 | Quinohemoprotein alcohol dehydrogenase; electron t | 84.64 | |
| 3scy_A | 361 | Hypothetical bacterial 6-phosphogluconolactonase; | 84.62 | |
| 3dwl_C | 377 | Actin-related protein 2/3 complex subunit 1; prope | 84.51 | |
| 3hfq_A | 347 | Uncharacterized protein LP_2219; Q88V64_lacpl, NES | 84.37 | |
| 1kb0_A | 677 | Quinohemoprotein alcohol dehydrogenase; beta-prope | 84.27 | |
| 3sfz_A | 1249 | APAF-1, apoptotic peptidase activating factor 1; a | 84.02 | |
| 1got_B | 340 | GT-beta; complex (GTP-binding/transducer), G prote | 83.76 | |
| 1sq9_A | 397 | Antiviral protein SKI8; WD repeat, beta-transducin | 83.74 | |
| 1jmx_B | 349 | Amine dehydrogenase; oxidoreductase; HET: TRQ HEC; | 83.7 | |
| 1pby_B | 337 | Quinohemoprotein amine dehydrogenase 40 kDa subuni | 83.67 | |
| 3mmy_A | 368 | MRNA export factor; mRNA export, nuclear protein; | 83.59 | |
| 1pby_B | 337 | Quinohemoprotein amine dehydrogenase 40 kDa subuni | 83.07 | |
| 3g4e_A | 297 | Regucalcin; six bladed beta-propeller, gluconolcat | 82.83 | |
| 3no2_A | 276 | Uncharacterized protein; six-bladed beta-propeller | 82.68 | |
| 3c75_H | 426 | MADH, methylamine dehydrogenase heavy chain; coppe | 82.68 | |
| 2ynn_A | 304 | Coatomer subunit beta'; protein transport, peptide | 82.58 | |
| 1flg_A | 582 | Protein (quinoprotein ethanol dehydrogenase); supe | 82.47 | |
| 2vdu_B | 450 | TRNA (guanine-N(7)-)-methyltransferase- associated | 82.28 | |
| 3vgz_A | 353 | Uncharacterized protein YNCE; beta-propeller, prot | 81.92 | |
| 3mkq_A | 814 | Coatomer beta'-subunit; beta-propeller, alpha-sole | 81.86 | |
| 3bg1_A | 316 | Protein SEC13 homolog; NPC, transport, WD repeat, | 81.7 | |
| 3odt_A | 313 | Protein DOA1; ubiquitin, nuclear protein; HET: MSE | 81.47 | |
| 3zwl_B | 369 | Eukaryotic translation initiation factor 3 subuni; | 81.38 | |
| 3ow8_A | 321 | WD repeat-containing protein 61; structural genomi | 80.87 | |
| 3mbr_X | 243 | Glutamine cyclotransferase; beta-propeller; 1.44A | 80.54 | |
| 3p5b_L | 400 | Low density lipoprotein receptor variant; B-propel | 80.51 | |
| 2ojh_A | 297 | Uncharacterized protein ATU1656/AGR_C_3050; TOLB, | 80.38 | |
| 1r5m_A | 425 | SIR4-interacting protein SIF2; transcription corep | 80.29 | |
| 3vl1_A | 420 | 26S proteasome regulatory subunit RPN14; beta-prop | 80.27 | |
| 2pm7_B | 297 | Protein transport protein SEC13, protein transport | 80.08 |
| >2woz_A Kelch repeat and BTB domain-containing protein 10; protein binding, invasion and metastasis, UBL conjugation pathway, UBL protein folding; 2.00A {Rattus norvegicus} | Back alignment and structure |
|---|
Probab=99.55 E-value=2.9e-12 Score=114.72 Aligned_cols=196 Identities=11% Similarity=0.162 Sum_probs=133.3
Q ss_pred EEEEEeccccceeecCCcCCCCCCCCcceEEEeeecCCCCeEEEEEEEEc--CCCCccEEEEEEecCCcEEEccCCCcce
Q 017748 119 IMLLLNPLTKRHRVLPTFYRDLSRCVPSLEGFGFDVGSGDFKLVKILAFG--KPMNYTEVAVFSLRVNSWRRIQDFPYFW 196 (366)
Q Consensus 119 ~~~V~NP~t~~~~~LP~~~~~~~~~~~~~~~lg~d~~~~~ykvv~~~~~~--~~~~~~~~~vyss~t~~W~~~~~~~~~~ 196 (366)
+. ++||.|++|..+|+++..+.. ..++.+ +. +++.+.-.. .......+++|+..+++|+.++.+|...
T Consensus 80 ~~-~~d~~~~~W~~~~~~p~~r~~--~~~~~~------~~-~iyv~GG~~~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r 149 (318)
T 2woz_A 80 FF-QLDNVSSEWVGLPPLPSARCL--FGLGEV------DD-KIYVVAGKDLQTEASLDSVLCYDPVAAKWSEVKNLPIKV 149 (318)
T ss_dssp EE-EEETTTTEEEECSCBSSCBCS--CEEEEE------TT-EEEEEEEEBTTTCCEEEEEEEEETTTTEEEEECCCSSCE
T ss_pred EE-EEeCCCCcEEECCCCCccccc--cceEEE------CC-EEEEEcCccCCCCcccceEEEEeCCCCCEeECCCCCCcc
Confidence 67 999999999999988776542 222222 12 344443322 2234567999999999999998887665
Q ss_pred ecCCcceEECCcEEEEEeeCCCCCCCcEEEEEECCCceeeee-CCCCccCCCCceEEEEEECCeEEEEEeecCCCCCCcE
Q 017748 197 VTGTCSVFVNGALHWTAALNQDADRNDIIIAFDLKSEEFYQV-PLPPIVGIEGYYILLEALGGCLCLLCKFDDDDDDRPW 275 (366)
Q Consensus 197 ~~~~~~v~~~G~lYw~~~~~~~~~~~~~i~~fD~~~~~~~~i-~lP~~~~~~~~~~~l~~~~g~L~l~~~~~~~~~~~~l 275 (366)
.... .+.++|.+|.+++..........+..||+++++|+.+ ++|... .....+..+|+|+++++..... ..-
T Consensus 150 ~~~~-~~~~~~~iyv~GG~~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r----~~~~~~~~~~~iyv~GG~~~~~--~~~ 222 (318)
T 2woz_A 150 YGHN-VISHNGMIYCLGGKTDDKKCTNRVFIYNPKKGDWKDLAPMKTPR----SMFGVAIHKGKIVIAGGVTEDG--LSA 222 (318)
T ss_dssp ESCE-EEEETTEEEEECCEESSSCBCCCEEEEETTTTEEEEECCCSSCC----BSCEEEEETTEEEEEEEEETTE--EEE
T ss_pred cccE-EEEECCEEEEEcCCCCCCCccceEEEEcCCCCEEEECCCCCCCc----ccceEEEECCEEEEEcCcCCCC--ccc
Confidence 4333 6779999999997643322334799999999999998 566544 3334677899999999876521 124
Q ss_pred EEEEeccCCCCCceEEEEEeccCCCceeeEEEEecCCcEEEEEee---------------CCeEEEEeCCCCeEEEe
Q 017748 276 DLWVMKEYGVNDSWTKLATLLNVGGGNVKPLVYSRSEDKVLLHAV---------------RGDLCWYDLERHRVRSI 337 (366)
Q Consensus 276 ~iW~l~~~~~~~~W~~~~~i~~~~~~~~~~~~~~~~g~~i~~~~~---------------~~~~~~yd~~t~~~~~v 337 (366)
++|.++-. ..+|+++..++.... ..-.++ .++ .|++... ...+..||+++++|+++
T Consensus 223 ~~~~yd~~--~~~W~~~~~~p~~r~--~~~~~~-~~~-~i~v~GG~~~~~~~~~~~~~~~~~~v~~yd~~~~~W~~~ 293 (318)
T 2woz_A 223 SVEAFDLK--TNKWEVMTEFPQERS--SISLVS-LAG-SLYAIGGFAMIQLESKEFAPTEVNDIWKYEDDKKEWAGM 293 (318)
T ss_dssp EEEEEETT--TCCEEECCCCSSCCB--SCEEEE-ETT-EEEEECCBCCBC----CCBCCBCCCEEEEETTTTEEEEE
T ss_pred eEEEEECC--CCeEEECCCCCCccc--ceEEEE-ECC-EEEEECCeeccCCCCceeccceeeeEEEEeCCCCEehhh
Confidence 67777653 467999877665432 222232 334 7777632 12499999999999998
|
| >3ii7_A Kelch-like protein 7; protein-binding, kelch-repeat, structural genomics, structur genomics consortium, SGC, kelch repeat, nucleus, protein BI; 1.63A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.55 E-value=2e-12 Score=114.99 Aligned_cols=217 Identities=9% Similarity=-0.025 Sum_probs=141.9
Q ss_pred EEeeeceeEEeec-----CCccEEEEEeccccceeecCCcCCCCCCCCcceEEEeeecCCCCeEEEEEEEEc-CCCCccE
Q 017748 102 IIGSCNGLLALED-----SRRNIMLLLNPLTKRHRVLPTFYRDLSRCVPSLEGFGFDVGSGDFKLVKILAFG-KPMNYTE 175 (366)
Q Consensus 102 ~~~s~~Gll~~~~-----~~~~~~~V~NP~t~~~~~LP~~~~~~~~~~~~~~~lg~d~~~~~ykvv~~~~~~-~~~~~~~ 175 (366)
.....+|.+.+.. ....+. ++||.|++|..+|+++..+.. ..++. ++ . +++.+.-.. .......
T Consensus 50 ~~~~~~~~lyv~GG~~~~~~~~~~-~~d~~~~~W~~~~~~p~~r~~--~~~~~--~~----~-~iyv~GG~~~~~~~~~~ 119 (306)
T 3ii7_A 50 ACVFWDNVVYILGGSQLFPIKRMD-CYNVVKDSWYSKLGPPTPRDS--LAACA--AE----G-KIYTSGGSEVGNSALYL 119 (306)
T ss_dssp EEEEETTEEEEECCBSSSBCCEEE-EEETTTTEEEEEECCSSCCBS--CEEEE--ET----T-EEEEECCBBTTBSCCCC
T ss_pred EEEEECCEEEEEeCCCCCCcceEE-EEeCCCCeEEECCCCCccccc--eeEEE--EC----C-EEEEECCCCCCCcEeee
Confidence 3344566554432 135677 999999999999988765432 22222 21 1 344443222 2244568
Q ss_pred EEEEEecCCcEEEccCCCcceecCCcceEECCcEEEEEeeCCCCCC---CcEEEEEECCCceeeee-CCCCccCCCCceE
Q 017748 176 VAVFSLRVNSWRRIQDFPYFWVTGTCSVFVNGALHWTAALNQDADR---NDIIIAFDLKSEEFYQV-PLPPIVGIEGYYI 251 (366)
Q Consensus 176 ~~vyss~t~~W~~~~~~~~~~~~~~~~v~~~G~lYw~~~~~~~~~~---~~~i~~fD~~~~~~~~i-~lP~~~~~~~~~~ 251 (366)
+++|+..+++|+.++.+|...... .++.++|.+|.+++....... ...+.+||+++++|+.+ ++|... ...
T Consensus 120 ~~~~d~~~~~W~~~~~~p~~r~~~-~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r----~~~ 194 (306)
T 3ii7_A 120 FECYDTRTESWHTKPSMLTQRCSH-GMVEANGLIYVCGGSLGNNVSGRVLNSCEVYDPATETWTELCPMIEAR----KNH 194 (306)
T ss_dssp EEEEETTTTEEEEECCCSSCCBSC-EEEEETTEEEEECCEESCTTTCEECCCEEEEETTTTEEEEECCCSSCC----BSC
T ss_pred EEEEeCCCCceEeCCCCcCCccee-EEEEECCEEEEECCCCCCCCcccccceEEEeCCCCCeEEECCCccchh----hcc
Confidence 999999999999998887654333 367789999999976432211 35799999999999998 566554 344
Q ss_pred EEEEECCeEEEEEeecCCCCCCcEEEEEeccCCCCCceEEEEEeccCCCceeeEEEEecCCcEEEEEeeC------CeEE
Q 017748 252 LLEALGGCLCLLCKFDDDDDDRPWDLWVMKEYGVNDSWTKLATLLNVGGGNVKPLVYSRSEDKVLLHAVR------GDLC 325 (366)
Q Consensus 252 ~l~~~~g~L~l~~~~~~~~~~~~l~iW~l~~~~~~~~W~~~~~i~~~~~~~~~~~~~~~~g~~i~~~~~~------~~~~ 325 (366)
.++..+|+|+++++..... ..-++|.++-. .++|+++..++.... ..-.++. ++ .|++.... ..+.
T Consensus 195 ~~~~~~~~i~v~GG~~~~~--~~~~~~~yd~~--~~~W~~~~~~p~~r~--~~~~~~~-~~-~i~v~GG~~~~~~~~~~~ 266 (306)
T 3ii7_A 195 GLVFVKDKIFAVGGQNGLG--GLDNVEYYDIK--LNEWKMVSPMPWKGV--TVKCAAV-GS-IVYVLAGFQGVGRLGHIL 266 (306)
T ss_dssp EEEEETTEEEEECCEETTE--EBCCEEEEETT--TTEEEECCCCSCCBS--CCEEEEE-TT-EEEEEECBCSSSBCCEEE
T ss_pred eEEEECCEEEEEeCCCCCC--CCceEEEeeCC--CCcEEECCCCCCCcc--ceeEEEE-CC-EEEEEeCcCCCeeeeeEE
Confidence 5677799999998865421 12346777652 367999876665332 2222222 44 77776531 3599
Q ss_pred EEeCCCCeEEEeeeec
Q 017748 326 WYDLERHRVRSIVEID 341 (366)
Q Consensus 326 ~yd~~t~~~~~v~~~~ 341 (366)
.||+++++|+.+-.+.
T Consensus 267 ~yd~~~~~W~~~~~~~ 282 (306)
T 3ii7_A 267 EYNTETDKWVANSKVR 282 (306)
T ss_dssp EEETTTTEEEEEEEEE
T ss_pred EEcCCCCeEEeCCCcc
Confidence 9999999999994444
|
| >2xn4_A Kelch-like protein 2; structural protein, cytoskeleton; 1.99A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.55 E-value=4e-12 Score=112.83 Aligned_cols=211 Identities=10% Similarity=0.109 Sum_probs=138.8
Q ss_pred eeeceeEEeec------CCccEEEEEeccccceeecCCcCCCCCCCCcceEEEeeecCCCCeEEEEEEEEcCCCCccEEE
Q 017748 104 GSCNGLLALED------SRRNIMLLLNPLTKRHRVLPTFYRDLSRCVPSLEGFGFDVGSGDFKLVKILAFGKPMNYTEVA 177 (366)
Q Consensus 104 ~s~~Gll~~~~------~~~~~~~V~NP~t~~~~~LP~~~~~~~~~~~~~~~lg~d~~~~~ykvv~~~~~~~~~~~~~~~ 177 (366)
...+|.+.+.. ....+. ++||.|++|..+|+++..+.. ..++. + +. +++.+.-.........++
T Consensus 58 ~~~~~~lyv~GG~~~~~~~~~~~-~~d~~~~~W~~~~~~p~~r~~--~~~~~--~----~~-~iyv~GG~~~~~~~~~~~ 127 (302)
T 2xn4_A 58 VYMAGLVFAVGGFNGSLRVRTVD-SYDPVKDQWTSVANMRDRRST--LGAAV--L----NG-LLYAVGGFDGSTGLSSVE 127 (302)
T ss_dssp EEETTEEEEESCBCSSSBCCCEE-EEETTTTEEEEECCCSSCCBS--CEEEE--E----TT-EEEEEEEECSSCEEEEEE
T ss_pred EEECCEEEEEeCcCCCccccceE-EECCCCCceeeCCCCCccccc--eEEEE--E----CC-EEEEEcCCCCCccCceEE
Confidence 34456554432 124578 999999999999988765432 22222 2 12 344443323333456799
Q ss_pred EEEecCCcEEEccCCCcceecCCcceEECCcEEEEEeeCCCC-CCCcEEEEEECCCceeeee-CCCCccCCCCceEEEEE
Q 017748 178 VFSLRVNSWRRIQDFPYFWVTGTCSVFVNGALHWTAALNQDA-DRNDIIIAFDLKSEEFYQV-PLPPIVGIEGYYILLEA 255 (366)
Q Consensus 178 vyss~t~~W~~~~~~~~~~~~~~~~v~~~G~lYw~~~~~~~~-~~~~~i~~fD~~~~~~~~i-~lP~~~~~~~~~~~l~~ 255 (366)
+|+..+++|+.++.+|..... ...+.++|.+|.+++..... .....+..||+++++|+.+ ++|... ....++.
T Consensus 128 ~~d~~~~~W~~~~~~p~~r~~-~~~~~~~~~iyv~GG~~~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r----~~~~~~~ 202 (302)
T 2xn4_A 128 AYNIKSNEWFHVAPMNTRRSS-VGVGVVGGLLYAVGGYDVASRQCLSTVECYNATTNEWTYIAEMSTRR----SGAGVGV 202 (302)
T ss_dssp EEETTTTEEEEECCCSSCCBS-CEEEEETTEEEEECCEETTTTEECCCEEEEETTTTEEEEECCCSSCC----BSCEEEE
T ss_pred EEeCCCCeEeecCCCCCcccC-ceEEEECCEEEEEeCCCCCCCccccEEEEEeCCCCcEEECCCCcccc----ccccEEE
Confidence 999999999999887765433 33677899999998764321 1124699999999999988 666554 3345677
Q ss_pred ECCeEEEEEeecCCCCCCcEEEEEeccCCCCCceEEEEEeccCCCceeeEEEEecCCcEEEEEeeC------CeEEEEeC
Q 017748 256 LGGCLCLLCKFDDDDDDRPWDLWVMKEYGVNDSWTKLATLLNVGGGNVKPLVYSRSEDKVLLHAVR------GDLCWYDL 329 (366)
Q Consensus 256 ~~g~L~l~~~~~~~~~~~~l~iW~l~~~~~~~~W~~~~~i~~~~~~~~~~~~~~~~g~~i~~~~~~------~~~~~yd~ 329 (366)
.+|+|+++++...... .-++|.++-. ..+|.++..++.... ..-.++ .++ .|++.... ..+..||+
T Consensus 203 ~~~~iyv~GG~~~~~~--~~~~~~yd~~--~~~W~~~~~~~~~r~--~~~~~~-~~~-~i~v~GG~~~~~~~~~v~~yd~ 274 (302)
T 2xn4_A 203 LNNLLYAVGGHDGPLV--RKSVEVYDPT--TNAWRQVADMNMCRR--NAGVCA-VNG-LLYVVGGDDGSCNLASVEYYNP 274 (302)
T ss_dssp ETTEEEEECCBSSSSB--CCCEEEEETT--TTEEEEECCCSSCCB--SCEEEE-ETT-EEEEECCBCSSSBCCCEEEEET
T ss_pred ECCEEEEECCCCCCcc--cceEEEEeCC--CCCEeeCCCCCCccc--cCeEEE-ECC-EEEEECCcCCCcccccEEEEcC
Confidence 8999999988654211 2357777652 367999876665432 222222 244 77777431 23999999
Q ss_pred CCCeEEEe
Q 017748 330 ERHRVRSI 337 (366)
Q Consensus 330 ~t~~~~~v 337 (366)
++++|+.+
T Consensus 275 ~~~~W~~~ 282 (302)
T 2xn4_A 275 TTDKWTVV 282 (302)
T ss_dssp TTTEEEEC
T ss_pred CCCeEEEC
Confidence 99999998
|
| >1zgk_A Kelch-like ECH-associated protein 1; beta-propeller, kelch repeat motif, protein binding; HET: MSE; 1.35A {Homo sapiens} SCOP: b.68.11.1 PDB: 2flu_X 1u6d_X 1x2j_A 1x2r_A 2dyh_A 2z32_A 3ade_A | Back alignment and structure |
|---|
Probab=99.55 E-value=3e-12 Score=114.11 Aligned_cols=201 Identities=11% Similarity=0.134 Sum_probs=133.2
Q ss_pred ccEEEEEeccccceeecCCcCCCCCCCCcceEEEeeecCCCCeEEEEEEEEcCCCCccEEEEEEecCCcEEEccCCCcce
Q 017748 117 RNIMLLLNPLTKRHRVLPTFYRDLSRCVPSLEGFGFDVGSGDFKLVKILAFGKPMNYTEVAVFSLRVNSWRRIQDFPYFW 196 (366)
Q Consensus 117 ~~~~~V~NP~t~~~~~LP~~~~~~~~~~~~~~~lg~d~~~~~ykvv~~~~~~~~~~~~~~~vyss~t~~W~~~~~~~~~~ 196 (366)
..+. ++||.|++|..+|+++..+.. ..++. ++ + +++.+.-.........+++|+..+++|+.++.+|...
T Consensus 90 ~~~~-~~d~~~~~W~~~~~~p~~r~~--~~~~~--~~---~--~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r 159 (308)
T 1zgk_A 90 SALD-CYNPMTNQWSPCAPMSVPRNR--IGVGV--ID---G--HIYAVGGSHGCIHHNSVERYEPERDEWHLVAPMLTRR 159 (308)
T ss_dssp CCEE-EEETTTTEEEECCCCSSCCBT--CEEEE--ET---T--EEEEECCEETTEECCCEEEEETTTTEEEECCCCSSCC
T ss_pred ceEE-EECCCCCeEeECCCCCcCccc--cEEEE--EC---C--EEEEEcCCCCCcccccEEEECCCCCeEeECCCCCccc
Confidence 3578 999999999999988765432 22222 21 2 3444432222223457999999999999998877554
Q ss_pred ecCCcceEECCcEEEEEeeCCCCCCCcEEEEEECCCceeeee-CCCCccCCCCceEEEEEECCeEEEEEeecCCCCCCcE
Q 017748 197 VTGTCSVFVNGALHWTAALNQDADRNDIIIAFDLKSEEFYQV-PLPPIVGIEGYYILLEALGGCLCLLCKFDDDDDDRPW 275 (366)
Q Consensus 197 ~~~~~~v~~~G~lYw~~~~~~~~~~~~~i~~fD~~~~~~~~i-~lP~~~~~~~~~~~l~~~~g~L~l~~~~~~~~~~~~l 275 (366)
... ..+.++|.+|.+++..... ....+..||+.+++|+.+ ++|... .....+..+++|+++++...... .-
T Consensus 160 ~~~-~~~~~~~~iyv~GG~~~~~-~~~~~~~yd~~~~~W~~~~~~p~~r----~~~~~~~~~~~iyv~GG~~~~~~--~~ 231 (308)
T 1zgk_A 160 IGV-GVAVLNRLLYAVGGFDGTN-RLNSAECYYPERNEWRMITAMNTIR----SGAGVCVLHNCIYAAGGYDGQDQ--LN 231 (308)
T ss_dssp BSC-EEEEETTEEEEECCBCSSC-BCCCEEEEETTTTEEEECCCCSSCC----BSCEEEEETTEEEEECCBCSSSB--CC
T ss_pred cce-EEEEECCEEEEEeCCCCCC-cCceEEEEeCCCCeEeeCCCCCCcc----ccceEEEECCEEEEEeCCCCCCc--cc
Confidence 333 3677899999998765322 134799999999999988 566544 33356677999999988654211 34
Q ss_pred EEEEeccCCCCCceEEEEEeccCCCceeeEEEEecCCcEEEEEee------CCeEEEEeCCCCeEEEeeeec
Q 017748 276 DLWVMKEYGVNDSWTKLATLLNVGGGNVKPLVYSRSEDKVLLHAV------RGDLCWYDLERHRVRSIVEID 341 (366)
Q Consensus 276 ~iW~l~~~~~~~~W~~~~~i~~~~~~~~~~~~~~~~g~~i~~~~~------~~~~~~yd~~t~~~~~v~~~~ 341 (366)
++|.++-. ..+|+++..++.... ..-.++ .++ .|++... ...+..||+++++|+++-.+.
T Consensus 232 ~v~~yd~~--~~~W~~~~~~p~~r~--~~~~~~-~~~-~i~v~GG~~~~~~~~~v~~yd~~~~~W~~~~~~p 297 (308)
T 1zgk_A 232 SVERYDVE--TETWTFVAPMKHRRS--ALGITV-HQG-RIYVLGGYDGHTFLDSVECYDPDTDTWSEVTRMT 297 (308)
T ss_dssp CEEEEETT--TTEEEECCCCSSCCB--SCEEEE-ETT-EEEEECCBCSSCBCCEEEEEETTTTEEEEEEECS
T ss_pred eEEEEeCC--CCcEEECCCCCCCcc--ceEEEE-ECC-EEEEEcCcCCCcccceEEEEcCCCCEEeecCCCC
Confidence 56777652 367999876654332 222222 244 7777643 134999999999999993433
|
| >4asc_A Kelch repeat and BTB domain-containing protein 5; protein binding, cytoskeleton; 1.78A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.54 E-value=2.2e-12 Score=115.31 Aligned_cols=196 Identities=11% Similarity=0.090 Sum_probs=133.7
Q ss_pred EEEEEeccccceeecCCcCCCCCCCCcceEEEeeecCCCCeEEEEEEEEc---CCCCccEEEEEEecCCcEEEccCCCcc
Q 017748 119 IMLLLNPLTKRHRVLPTFYRDLSRCVPSLEGFGFDVGSGDFKLVKILAFG---KPMNYTEVAVFSLRVNSWRRIQDFPYF 195 (366)
Q Consensus 119 ~~~V~NP~t~~~~~LP~~~~~~~~~~~~~~~lg~d~~~~~ykvv~~~~~~---~~~~~~~~~vyss~t~~W~~~~~~~~~ 195 (366)
+. ++||.|++|..+|+++..+.. ..++.+ +. +++.+.-.. .......+++|+..+++|+.++.+|..
T Consensus 69 ~~-~~d~~~~~W~~~~~~p~~r~~--~~~~~~------~~-~lyv~GG~~~~~~~~~~~~~~~~d~~~~~W~~~~~~p~~ 138 (315)
T 4asc_A 69 FL-QFDHLDSEWLGMPPLPSPRCL--FGLGEA------LN-SIYVVGGREIKDGERCLDSVMCYDRLSFKWGESDPLPYV 138 (315)
T ss_dssp EE-EEETTTTEEEECCCBSSCEES--CEEEEE------TT-EEEEECCEESSTTCCBCCCEEEEETTTTEEEECCCCSSC
T ss_pred eE-EecCCCCeEEECCCCCcchhc--eeEEEE------CC-EEEEEeCCcCCCCCcccceEEEECCCCCcEeECCCCCCc
Confidence 67 899999999999988765432 222221 12 344443222 134456899999999999999888765
Q ss_pred eecCCcceEECCcEEEEEeeCCCCCCCcEEEEEECCCceeeee-CCCCccCCCCceEEEEEECCeEEEEEeecCCCCCCc
Q 017748 196 WVTGTCSVFVNGALHWTAALNQDADRNDIIIAFDLKSEEFYQV-PLPPIVGIEGYYILLEALGGCLCLLCKFDDDDDDRP 274 (366)
Q Consensus 196 ~~~~~~~v~~~G~lYw~~~~~~~~~~~~~i~~fD~~~~~~~~i-~lP~~~~~~~~~~~l~~~~g~L~l~~~~~~~~~~~~ 274 (366)
... ..++.++|.+|.+++..........+.+||+.+++|+.+ ++|... .....+..+|+|+++++..... ..
T Consensus 139 r~~-~~~~~~~~~iyv~GG~~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r----~~~~~~~~~~~iyv~GG~~~~~--~~ 211 (315)
T 4asc_A 139 VYG-HTVLSHMDLVYVIGGKGSDRKCLNKMCVYDPKKFEWKELAPMQTAR----SLFGATVHDGRIIVAAGVTDTG--LT 211 (315)
T ss_dssp CBS-CEEEEETTEEEEECCBCTTSCBCCCEEEEETTTTEEEECCCCSSCC----BSCEEEEETTEEEEEEEECSSS--EE
T ss_pred ccc-eeEEEECCEEEEEeCCCCCCcccceEEEEeCCCCeEEECCCCCCch----hceEEEEECCEEEEEeccCCCC--cc
Confidence 433 336779999999998743333345799999999999988 566654 3445677899999999976531 13
Q ss_pred EEEEEeccCCCCCceEEEEEeccCCCceeeEEEEecCCcEEEEEeeC---------------CeEEEEeCCCCeEEEe
Q 017748 275 WDLWVMKEYGVNDSWTKLATLLNVGGGNVKPLVYSRSEDKVLLHAVR---------------GDLCWYDLERHRVRSI 337 (366)
Q Consensus 275 l~iW~l~~~~~~~~W~~~~~i~~~~~~~~~~~~~~~~g~~i~~~~~~---------------~~~~~yd~~t~~~~~v 337 (366)
-++|.++-. ..+|+++..++.... ..-.++ .++ .|++.... ..+..||+++++|+.+
T Consensus 212 ~~~~~yd~~--~~~W~~~~~~p~~r~--~~~~~~-~~~-~l~v~GG~~~~~~~~~~~~~~~~~~v~~yd~~~~~W~~~ 283 (315)
T 4asc_A 212 SSAEVYSIT--DNKWAPFEAFPQERS--SLSLVS-LVG-TLYAIGGFATLETESGELVPTELNDIWRYNEEEKKWEGV 283 (315)
T ss_dssp EEEEEEETT--TTEEEEECCCSSCCB--SCEEEE-ETT-EEEEEEEEEEEECTTSCEEEEEEEEEEEEETTTTEEEEE
T ss_pred ceEEEEECC--CCeEEECCCCCCccc--ceeEEE-ECC-EEEEECCccccCcCCccccccccCcEEEecCCCChhhhh
Confidence 367887763 468999876654432 222222 344 66665421 2389999999999999
|
| >2vpj_A Kelch-like protein 12; adaptor protein, WNT signaling pathway, protein-binding, UBI degradation, UBL conjugation pathway, CUL3, kelch repeat; 1.85A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.54 E-value=3.8e-12 Score=112.94 Aligned_cols=201 Identities=10% Similarity=0.102 Sum_probs=133.8
Q ss_pred ccEEEEEeccccc---eeecCCcCCCCCCCCcceEEEeeecCCCCeEEEEEEEEcCCCCccEEEEEEecCCcEEEccCCC
Q 017748 117 RNIMLLLNPLTKR---HRVLPTFYRDLSRCVPSLEGFGFDVGSGDFKLVKILAFGKPMNYTEVAVFSLRVNSWRRIQDFP 193 (366)
Q Consensus 117 ~~~~~V~NP~t~~---~~~LP~~~~~~~~~~~~~~~lg~d~~~~~ykvv~~~~~~~~~~~~~~~vyss~t~~W~~~~~~~ 193 (366)
..+. ++||.|++ |..+++++..+.. ..++. ++ . +++.+.-.........+++|+..+++|+.++.+|
T Consensus 78 ~~~~-~~d~~~~~~~~W~~~~~~p~~r~~--~~~~~--~~----~-~lyv~GG~~~~~~~~~~~~~d~~~~~W~~~~~~p 147 (301)
T 2vpj_A 78 SSVE-CLDYTADEDGVWYSVAPMNVRRGL--AGATT--LG----D-MIYVSGGFDGSRRHTSMERYDPNIDQWSMLGDMQ 147 (301)
T ss_dssp CCEE-EEETTCCTTCCCEEECCCSSCCBS--CEEEE--ET----T-EEEEECCBCSSCBCCEEEEEETTTTEEEEEEECS
T ss_pred ceEE-EEECCCCCCCeeEECCCCCCCccc--eeEEE--EC----C-EEEEEcccCCCcccceEEEEcCCCCeEEECCCCC
Confidence 4578 99999999 9999988765432 22222 21 2 4444432222233568999999999999998777
Q ss_pred cceecCCcceEECCcEEEEEeeCCCCCCCcEEEEEECCCceeeee-CCCCccCCCCceEEEEEECCeEEEEEeecCCCCC
Q 017748 194 YFWVTGTCSVFVNGALHWTAALNQDADRNDIIIAFDLKSEEFYQV-PLPPIVGIEGYYILLEALGGCLCLLCKFDDDDDD 272 (366)
Q Consensus 194 ~~~~~~~~~v~~~G~lYw~~~~~~~~~~~~~i~~fD~~~~~~~~i-~lP~~~~~~~~~~~l~~~~g~L~l~~~~~~~~~~ 272 (366)
..... ...+.++|.+|.+++.... .....+.+||+++++|+.+ ++|... ....++..+++|++++.......
T Consensus 148 ~~r~~-~~~~~~~~~iyv~GG~~~~-~~~~~~~~~d~~~~~W~~~~~~p~~r----~~~~~~~~~~~i~v~GG~~~~~~- 220 (301)
T 2vpj_A 148 TAREG-AGLVVASGVIYCLGGYDGL-NILNSVEKYDPHTGHWTNVTPMATKR----SGAGVALLNDHIYVVGGFDGTAH- 220 (301)
T ss_dssp SCCBS-CEEEEETTEEEEECCBCSS-CBCCCEEEEETTTTEEEEECCCSSCC----BSCEEEEETTEEEEECCBCSSSB-
T ss_pred CCccc-ceEEEECCEEEEECCCCCC-cccceEEEEeCCCCcEEeCCCCCccc----ccceEEEECCEEEEEeCCCCCcc-
Confidence 54433 3367789999999875432 1234799999999999998 566554 34456778999999988764211
Q ss_pred CcEEEEEeccCCCCCceEEEEEeccCCCceeeEEEEecCCcEEEEEeeC------CeEEEEeCCCCeEEEeeeec
Q 017748 273 RPWDLWVMKEYGVNDSWTKLATLLNVGGGNVKPLVYSRSEDKVLLHAVR------GDLCWYDLERHRVRSIVEID 341 (366)
Q Consensus 273 ~~l~iW~l~~~~~~~~W~~~~~i~~~~~~~~~~~~~~~~g~~i~~~~~~------~~~~~yd~~t~~~~~v~~~~ 341 (366)
.-++|.++-. ..+|+++..++.... ..-.++ .++ .|++.... ..+..||+++++|+.+-.+.
T Consensus 221 -~~~v~~yd~~--~~~W~~~~~~p~~r~--~~~~~~-~~~-~i~v~GG~~~~~~~~~v~~yd~~~~~W~~~~~~~ 288 (301)
T 2vpj_A 221 -LSSVEAYNIR--TDSWTTVTSMTTPRC--YVGATV-LRG-RLYAIAGYDGNSLLSSIECYDPIIDSWEVVTSMG 288 (301)
T ss_dssp -CCCEEEEETT--TTEEEEECCCSSCCB--SCEEEE-ETT-EEEEECCBCSSSBEEEEEEEETTTTEEEEEEEEE
T ss_pred -cceEEEEeCC--CCcEEECCCCCCccc--ceeEEE-ECC-EEEEEcCcCCCcccccEEEEcCCCCeEEEcCCCC
Confidence 2346666652 367999876655432 222222 344 77776431 24899999999999993433
|
| >3ii7_A Kelch-like protein 7; protein-binding, kelch-repeat, structural genomics, structur genomics consortium, SGC, kelch repeat, nucleus, protein BI; 1.63A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.50 E-value=6.1e-12 Score=111.87 Aligned_cols=200 Identities=9% Similarity=0.105 Sum_probs=133.3
Q ss_pred CccEEEEEeccccceeecCCcCCCCCCCCcceEEEeeecCCCCeEEEEEEEEcCCCCccEEEEEEecCCcEEEccCCCcc
Q 017748 116 RRNIMLLLNPLTKRHRVLPTFYRDLSRCVPSLEGFGFDVGSGDFKLVKILAFGKPMNYTEVAVFSLRVNSWRRIQDFPYF 195 (366)
Q Consensus 116 ~~~~~~V~NP~t~~~~~LP~~~~~~~~~~~~~~~lg~d~~~~~ykvv~~~~~~~~~~~~~~~vyss~t~~W~~~~~~~~~ 195 (366)
...+. ++||.+++|..+++++..+.. ..++. . +. +|+.+.-.. ......+++|+..+++|+.++.+|..
T Consensus 23 ~~~~~-~~d~~~~~W~~~~~~p~~r~~--~~~~~--~----~~-~lyv~GG~~-~~~~~~~~~~d~~~~~W~~~~~~p~~ 91 (306)
T 3ii7_A 23 PQSCR-YFNPKDYSWTDIRCPFEKRRD--AACVF--W----DN-VVYILGGSQ-LFPIKRMDCYNVVKDSWYSKLGPPTP 91 (306)
T ss_dssp TTSEE-EEETTTTEEEECCCCSCCCBS--CEEEE--E----TT-EEEEECCBS-SSBCCEEEEEETTTTEEEEEECCSSC
T ss_pred CceEE-EecCCCCCEecCCCCCcccce--eEEEE--E----CC-EEEEEeCCC-CCCcceEEEEeCCCCeEEECCCCCcc
Confidence 35678 999999999999988765432 22222 2 12 344433212 33456899999999999999888755
Q ss_pred eecCCcceEECCcEEEEEeeCCCCCCCcEEEEEECCCceeeee-CCCCccCCCCceEEEEEECCeEEEEEeecCCCCC--
Q 017748 196 WVTGTCSVFVNGALHWTAALNQDADRNDIIIAFDLKSEEFYQV-PLPPIVGIEGYYILLEALGGCLCLLCKFDDDDDD-- 272 (366)
Q Consensus 196 ~~~~~~~v~~~G~lYw~~~~~~~~~~~~~i~~fD~~~~~~~~i-~lP~~~~~~~~~~~l~~~~g~L~l~~~~~~~~~~-- 272 (366)
... ..++.++|.+|.+++..........+..||+.+++|+.+ ++|... .....+..+|+|+++++.......
T Consensus 92 r~~-~~~~~~~~~iyv~GG~~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r----~~~~~~~~~~~iyv~GG~~~~~~~~~ 166 (306)
T 3ii7_A 92 RDS-LAACAAEGKIYTSGGSEVGNSALYLFECYDTRTESWHTKPSMLTQR----CSHGMVEANGLIYVCGGSLGNNVSGR 166 (306)
T ss_dssp CBS-CEEEEETTEEEEECCBBTTBSCCCCEEEEETTTTEEEEECCCSSCC----BSCEEEEETTEEEEECCEESCTTTCE
T ss_pred ccc-eeEEEECCEEEEECCCCCCCcEeeeEEEEeCCCCceEeCCCCcCCc----ceeEEEEECCEEEEECCCCCCCCccc
Confidence 433 336778999999988653333345799999999999988 666554 334556789999999887643210
Q ss_pred CcEEEEEeccCCCCCceEEEEEeccCCCceeeEEEEecCCcEEEEEee------CCeEEEEeCCCCeEEEe
Q 017748 273 RPWDLWVMKEYGVNDSWTKLATLLNVGGGNVKPLVYSRSEDKVLLHAV------RGDLCWYDLERHRVRSI 337 (366)
Q Consensus 273 ~~l~iW~l~~~~~~~~W~~~~~i~~~~~~~~~~~~~~~~g~~i~~~~~------~~~~~~yd~~t~~~~~v 337 (366)
..-++|.++-. ..+|+++..++.... ..-.++ .++ +|++... ...+..||+++++|+.+
T Consensus 167 ~~~~~~~yd~~--~~~W~~~~~~p~~r~--~~~~~~-~~~-~i~v~GG~~~~~~~~~~~~yd~~~~~W~~~ 231 (306)
T 3ii7_A 167 VLNSCEVYDPA--TETWTELCPMIEARK--NHGLVF-VKD-KIFAVGGQNGLGGLDNVEYYDIKLNEWKMV 231 (306)
T ss_dssp ECCCEEEEETT--TTEEEEECCCSSCCB--SCEEEE-ETT-EEEEECCEETTEEBCCEEEEETTTTEEEEC
T ss_pred ccceEEEeCCC--CCeEEECCCccchhh--cceEEE-ECC-EEEEEeCCCCCCCCceEEEeeCCCCcEEEC
Confidence 02346666652 367999876654332 222222 244 7777642 12499999999999999
|
| >2vpj_A Kelch-like protein 12; adaptor protein, WNT signaling pathway, protein-binding, UBI degradation, UBL conjugation pathway, CUL3, kelch repeat; 1.85A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.45 E-value=2.3e-11 Score=107.83 Aligned_cols=198 Identities=10% Similarity=0.130 Sum_probs=131.8
Q ss_pred ccEEEEEeccccceeecCCcCCCCCCCCcceEEEeeecCCCCeEEEEEEEEcCCCCccEEEEEEecCCc---EEEccCCC
Q 017748 117 RNIMLLLNPLTKRHRVLPTFYRDLSRCVPSLEGFGFDVGSGDFKLVKILAFGKPMNYTEVAVFSLRVNS---WRRIQDFP 193 (366)
Q Consensus 117 ~~~~~V~NP~t~~~~~LP~~~~~~~~~~~~~~~lg~d~~~~~ykvv~~~~~~~~~~~~~~~vyss~t~~---W~~~~~~~ 193 (366)
..+. ++||.|++|..+|+++..+.. ..++. .+ . +++.+.-.........+++|+..+++ |+.++.+|
T Consensus 31 ~~~~-~~d~~~~~W~~~~~~p~~r~~--~~~~~--~~----~-~l~v~GG~~~~~~~~~~~~~d~~~~~~~~W~~~~~~p 100 (301)
T 2vpj_A 31 DVVE-KYDPKTQEWSFLPSITRKRRY--VASVS--LH----D-RIYVIGGYDGRSRLSSVECLDYTADEDGVWYSVAPMN 100 (301)
T ss_dssp CCEE-EEETTTTEEEECCCCSSCCBS--CEEEE--ET----T-EEEEECCBCSSCBCCCEEEEETTCCTTCCCEEECCCS
T ss_pred eEEE-EEcCCCCeEEeCCCCChhhcc--ccEEE--EC----C-EEEEEcCCCCCccCceEEEEECCCCCCCeeEECCCCC
Confidence 4578 999999999999987664332 22222 11 2 44444322222345679999999999 99998887
Q ss_pred cceecCCcceEECCcEEEEEeeCCCCCCCcEEEEEECCCceeeee-CCCCccCCCCceEEEEEECCeEEEEEeecCCCCC
Q 017748 194 YFWVTGTCSVFVNGALHWTAALNQDADRNDIIIAFDLKSEEFYQV-PLPPIVGIEGYYILLEALGGCLCLLCKFDDDDDD 272 (366)
Q Consensus 194 ~~~~~~~~~v~~~G~lYw~~~~~~~~~~~~~i~~fD~~~~~~~~i-~lP~~~~~~~~~~~l~~~~g~L~l~~~~~~~~~~ 272 (366)
..... ...+.++|.+|.+++.... .....+..||+.+++|+.+ ++|... .....+..+|+|+++++.....
T Consensus 101 ~~r~~-~~~~~~~~~lyv~GG~~~~-~~~~~~~~~d~~~~~W~~~~~~p~~r----~~~~~~~~~~~iyv~GG~~~~~-- 172 (301)
T 2vpj_A 101 VRRGL-AGATTLGDMIYVSGGFDGS-RRHTSMERYDPNIDQWSMLGDMQTAR----EGAGLVVASGVIYCLGGYDGLN-- 172 (301)
T ss_dssp SCCBS-CEEEEETTEEEEECCBCSS-CBCCEEEEEETTTTEEEEEEECSSCC----BSCEEEEETTEEEEECCBCSSC--
T ss_pred CCccc-eeEEEECCEEEEEcccCCC-cccceEEEEcCCCCeEEECCCCCCCc----ccceEEEECCEEEEECCCCCCc--
Confidence 65433 3367789999999876532 2235899999999999988 666544 3345567799999998865421
Q ss_pred CcEEEEEeccCCCCCceEEEEEeccCCCceeeEEEEecCCcEEEEEeeC------CeEEEEeCCCCeEEEee
Q 017748 273 RPWDLWVMKEYGVNDSWTKLATLLNVGGGNVKPLVYSRSEDKVLLHAVR------GDLCWYDLERHRVRSIV 338 (366)
Q Consensus 273 ~~l~iW~l~~~~~~~~W~~~~~i~~~~~~~~~~~~~~~~g~~i~~~~~~------~~~~~yd~~t~~~~~v~ 338 (366)
..-++|.++-. ..+|+++..++... ....++..++ .|++.... ..+..||+++++|+.+-
T Consensus 173 ~~~~~~~~d~~--~~~W~~~~~~p~~r---~~~~~~~~~~-~i~v~GG~~~~~~~~~v~~yd~~~~~W~~~~ 238 (301)
T 2vpj_A 173 ILNSVEKYDPH--TGHWTNVTPMATKR---SGAGVALLND-HIYVVGGFDGTAHLSSVEAYNIRTDSWTTVT 238 (301)
T ss_dssp BCCCEEEEETT--TTEEEEECCCSSCC---BSCEEEEETT-EEEEECCBCSSSBCCCEEEEETTTTEEEEEC
T ss_pred ccceEEEEeCC--CCcEEeCCCCCccc---ccceEEEECC-EEEEEeCCCCCcccceEEEEeCCCCcEEECC
Confidence 12346666652 36799986665433 2222222344 77776531 24999999999999993
|
| >2xn4_A Kelch-like protein 2; structural protein, cytoskeleton; 1.99A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.45 E-value=1.7e-11 Score=108.76 Aligned_cols=199 Identities=13% Similarity=0.183 Sum_probs=131.7
Q ss_pred ccEEEEEeccccceeecCCcCCCCCCCCcceEEEeeecCCCCeEEEEEEEEcCCCCccEEEEEEecCCcEEEccCCCcce
Q 017748 117 RNIMLLLNPLTKRHRVLPTFYRDLSRCVPSLEGFGFDVGSGDFKLVKILAFGKPMNYTEVAVFSLRVNSWRRIQDFPYFW 196 (366)
Q Consensus 117 ~~~~~V~NP~t~~~~~LP~~~~~~~~~~~~~~~lg~d~~~~~ykvv~~~~~~~~~~~~~~~vyss~t~~W~~~~~~~~~~ 196 (366)
..+. ++||.+++|..++++|..+.. ..++. . +. +|+.+.-.........+++|+..+++|+.++.+|...
T Consensus 30 ~~~~-~~d~~~~~W~~~~~~p~~r~~--~~~~~--~----~~-~lyv~GG~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r 99 (302)
T 2xn4_A 30 RSVE-CYDFKEERWHQVAELPSRRCR--AGMVY--M----AG-LVFAVGGFNGSLRVRTVDSYDPVKDQWTSVANMRDRR 99 (302)
T ss_dssp CCEE-EEETTTTEEEEECCCSSCCBS--CEEEE--E----TT-EEEEESCBCSSSBCCCEEEEETTTTEEEEECCCSSCC
T ss_pred CcEE-EEcCcCCcEeEcccCCccccc--ceEEE--E----CC-EEEEEeCcCCCccccceEEECCCCCceeeCCCCCccc
Confidence 4577 899999999999887765432 12221 1 12 3444432222233467899999999999998887654
Q ss_pred ecCCcceEECCcEEEEEeeCCCCCCCcEEEEEECCCceeeee-CCCCccCCCCceEEEEEECCeEEEEEeecCCCCCCcE
Q 017748 197 VTGTCSVFVNGALHWTAALNQDADRNDIIIAFDLKSEEFYQV-PLPPIVGIEGYYILLEALGGCLCLLCKFDDDDDDRPW 275 (366)
Q Consensus 197 ~~~~~~v~~~G~lYw~~~~~~~~~~~~~i~~fD~~~~~~~~i-~lP~~~~~~~~~~~l~~~~g~L~l~~~~~~~~~~~~l 275 (366)
.. ...+.++|.+|.+++.... .....+..||+.+++|+.+ ++|... .....+..+|+|+++++.........-
T Consensus 100 ~~-~~~~~~~~~iyv~GG~~~~-~~~~~~~~~d~~~~~W~~~~~~p~~r----~~~~~~~~~~~iyv~GG~~~~~~~~~~ 173 (302)
T 2xn4_A 100 ST-LGAAVLNGLLYAVGGFDGS-TGLSSVEAYNIKSNEWFHVAPMNTRR----SSVGVGVVGGLLYAVGGYDVASRQCLS 173 (302)
T ss_dssp BS-CEEEEETTEEEEEEEECSS-CEEEEEEEEETTTTEEEEECCCSSCC----BSCEEEEETTEEEEECCEETTTTEECC
T ss_pred cc-eEEEEECCEEEEEcCCCCC-ccCceEEEEeCCCCeEeecCCCCCcc----cCceEEEECCEEEEEeCCCCCCCcccc
Confidence 33 3367789999999986532 2234799999999999998 566544 334567789999999887542110122
Q ss_pred EEEEeccCCCCCceEEEEEeccCCCceeeEEEEecCCcEEEEEeeC------CeEEEEeCCCCeEEEe
Q 017748 276 DLWVMKEYGVNDSWTKLATLLNVGGGNVKPLVYSRSEDKVLLHAVR------GDLCWYDLERHRVRSI 337 (366)
Q Consensus 276 ~iW~l~~~~~~~~W~~~~~i~~~~~~~~~~~~~~~~g~~i~~~~~~------~~~~~yd~~t~~~~~v 337 (366)
++|.++- ...+|+++..++.... ..-.++ .++ .|++.... ..+..||+++++|+.+
T Consensus 174 ~~~~yd~--~~~~W~~~~~~p~~r~--~~~~~~-~~~-~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~ 235 (302)
T 2xn4_A 174 TVECYNA--TTNEWTYIAEMSTRRS--GAGVGV-LNN-LLYAVGGHDGPLVRKSVEVYDPTTNAWRQV 235 (302)
T ss_dssp CEEEEET--TTTEEEEECCCSSCCB--SCEEEE-ETT-EEEEECCBSSSSBCCCEEEEETTTTEEEEE
T ss_pred EEEEEeC--CCCcEEECCCCccccc--cccEEE-ECC-EEEEECCCCCCcccceEEEEeCCCCCEeeC
Confidence 4666665 2467999876654432 222222 344 77777431 2499999999999998
|
| >1zgk_A Kelch-like ECH-associated protein 1; beta-propeller, kelch repeat motif, protein binding; HET: MSE; 1.35A {Homo sapiens} SCOP: b.68.11.1 PDB: 2flu_X 1u6d_X 1x2j_A 1x2r_A 2dyh_A 2z32_A 3ade_A | Back alignment and structure |
|---|
Probab=99.40 E-value=2.1e-11 Score=108.62 Aligned_cols=197 Identities=10% Similarity=0.070 Sum_probs=129.8
Q ss_pred ccEEEEEeccccceeecCCcCCCCCCCCcceEEEeeecCCCCeEEEEEEEE----cCCCCccEEEEEEecCCcEEEccCC
Q 017748 117 RNIMLLLNPLTKRHRVLPTFYRDLSRCVPSLEGFGFDVGSGDFKLVKILAF----GKPMNYTEVAVFSLRVNSWRRIQDF 192 (366)
Q Consensus 117 ~~~~~V~NP~t~~~~~LP~~~~~~~~~~~~~~~lg~d~~~~~ykvv~~~~~----~~~~~~~~~~vyss~t~~W~~~~~~ 192 (366)
..+. ++||.+++|..++++|..+.. ..++. . +. +|+.+.-. ........+++|+..+++|+.++.+
T Consensus 39 ~~~~-~~d~~~~~W~~~~~~p~~r~~--~~~~~--~----~~-~lyv~GG~~~~~~~~~~~~~~~~~d~~~~~W~~~~~~ 108 (308)
T 1zgk_A 39 SYLE-AYNPSNGTWLRLADLQVPRSG--LAGCV--V----GG-LLYAVGGRNNSPDGNTDSSALDCYNPMTNQWSPCAPM 108 (308)
T ss_dssp CCEE-EEETTTTEEEECCCCSSCCBS--CEEEE--E----TT-EEEEECCEEEETTEEEECCCEEEEETTTTEEEECCCC
T ss_pred ceEE-EEcCCCCeEeECCCCCccccc--ceEEE--E----CC-EEEEECCCcCCCCCCeecceEEEECCCCCeEeECCCC
Confidence 4577 999999999999887765432 12221 1 12 33333211 1112245789999999999999887
Q ss_pred CcceecCCcceEECCcEEEEEeeCCCCCCCcEEEEEECCCceeeee-CCCCccCCCCceEEEEEECCeEEEEEeecCCCC
Q 017748 193 PYFWVTGTCSVFVNGALHWTAALNQDADRNDIIIAFDLKSEEFYQV-PLPPIVGIEGYYILLEALGGCLCLLCKFDDDDD 271 (366)
Q Consensus 193 ~~~~~~~~~~v~~~G~lYw~~~~~~~~~~~~~i~~fD~~~~~~~~i-~lP~~~~~~~~~~~l~~~~g~L~l~~~~~~~~~ 271 (366)
|..... ...+.++|.+|.+++.... .....+..||+.+++|+.+ ++|... .....+..+++|++++.......
T Consensus 109 p~~r~~-~~~~~~~~~iyv~GG~~~~-~~~~~~~~yd~~~~~W~~~~~~p~~r----~~~~~~~~~~~iyv~GG~~~~~~ 182 (308)
T 1zgk_A 109 SVPRNR-IGVGVIDGHIYAVGGSHGC-IHHNSVERYEPERDEWHLVAPMLTRR----IGVGVAVLNRLLYAVGGFDGTNR 182 (308)
T ss_dssp SSCCBT-CEEEEETTEEEEECCEETT-EECCCEEEEETTTTEEEECCCCSSCC----BSCEEEEETTEEEEECCBCSSCB
T ss_pred CcCccc-cEEEEECCEEEEEcCCCCC-cccccEEEECCCCCeEeECCCCCccc----cceEEEEECCEEEEEeCCCCCCc
Confidence 765433 3367789999999875432 1124699999999999988 666554 33345667999999988764321
Q ss_pred CCcEEEEEeccCCCCCceEEEEEeccCCCceeeEEEEecCCcEEEEEeeC------CeEEEEeCCCCeEEEe
Q 017748 272 DRPWDLWVMKEYGVNDSWTKLATLLNVGGGNVKPLVYSRSEDKVLLHAVR------GDLCWYDLERHRVRSI 337 (366)
Q Consensus 272 ~~~l~iW~l~~~~~~~~W~~~~~i~~~~~~~~~~~~~~~~g~~i~~~~~~------~~~~~yd~~t~~~~~v 337 (366)
.-++|.++- ...+|+++..++.... ..-.++ .++ .|++.... ..+..||+++++|+.+
T Consensus 183 --~~~~~~yd~--~~~~W~~~~~~p~~r~--~~~~~~-~~~-~iyv~GG~~~~~~~~~v~~yd~~~~~W~~~ 246 (308)
T 1zgk_A 183 --LNSAECYYP--ERNEWRMITAMNTIRS--GAGVCV-LHN-CIYAAGGYDGQDQLNSVERYDVETETWTFV 246 (308)
T ss_dssp --CCCEEEEET--TTTEEEECCCCSSCCB--SCEEEE-ETT-EEEEECCBCSSSBCCCEEEEETTTTEEEEC
T ss_pred --CceEEEEeC--CCCeEeeCCCCCCccc--cceEEE-ECC-EEEEEeCCCCCCccceEEEEeCCCCcEEEC
Confidence 234666665 2467999876655332 222222 244 77777531 3499999999999998
|
| >4asc_A Kelch repeat and BTB domain-containing protein 5; protein binding, cytoskeleton; 1.78A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.40 E-value=9.4e-11 Score=104.64 Aligned_cols=203 Identities=10% Similarity=0.077 Sum_probs=128.4
Q ss_pred ccEEEEEeccccceeecCCcCCCCCCCCcceEEEeeecCCCCeEEEEEEEEcC-C---CCccEEEEEEecCCcEEEccCC
Q 017748 117 RNIMLLLNPLTKRHRVLPTFYRDLSRCVPSLEGFGFDVGSGDFKLVKILAFGK-P---MNYTEVAVFSLRVNSWRRIQDF 192 (366)
Q Consensus 117 ~~~~~V~NP~t~~~~~LP~~~~~~~~~~~~~~~lg~d~~~~~ykvv~~~~~~~-~---~~~~~~~vyss~t~~W~~~~~~ 192 (366)
..+. ++||.|++|.. ++++.+..+ ...+... ..+..-|+....... . .....+++|+..+++|+.++.+
T Consensus 13 ~~~~-~yd~~~~~W~~-~~~~~p~~r---~~~~~~~--~~~~iyv~GG~~~~~~~~~~~~~~~~~~~d~~~~~W~~~~~~ 85 (315)
T 4asc_A 13 EGAV-AYDPAANECYC-ASLSSQVPK---NHVSLVT--KENQVFVAGGLFYNEDNKEDPMSAYFLQFDHLDSEWLGMPPL 85 (315)
T ss_dssp TEEE-EEETTTTEEEE-EECCCCSCS---SEEEEEC--TTCCEEEEEEEEECSSCSSSCEEEEEEEEETTTTEEEECCCB
T ss_pred CceE-EECCCCCeEec-CCCCCCCCc---cceEEEE--ECCEEEEEcCcccCCCCCccccccceEEecCCCCeEEECCCC
Confidence 5678 99999999986 444332222 1112221 123223333221111 1 1123489999999999999888
Q ss_pred CcceecCCcceEECCcEEEEEeeCC--CCCCCcEEEEEECCCceeeee-CCCCccCCCCceEEEEEECCeEEEEEeecCC
Q 017748 193 PYFWVTGTCSVFVNGALHWTAALNQ--DADRNDIIIAFDLKSEEFYQV-PLPPIVGIEGYYILLEALGGCLCLLCKFDDD 269 (366)
Q Consensus 193 ~~~~~~~~~~v~~~G~lYw~~~~~~--~~~~~~~i~~fD~~~~~~~~i-~lP~~~~~~~~~~~l~~~~g~L~l~~~~~~~ 269 (366)
|...... ..+.++|.+|.+++... .......+..||+.+++|+.+ ++|... .....+..+|+|+++++....
T Consensus 86 p~~r~~~-~~~~~~~~lyv~GG~~~~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r----~~~~~~~~~~~iyv~GG~~~~ 160 (315)
T 4asc_A 86 PSPRCLF-GLGEALNSIYVVGGREIKDGERCLDSVMCYDRLSFKWGESDPLPYVV----YGHTVLSHMDLVYVIGGKGSD 160 (315)
T ss_dssp SSCEESC-EEEEETTEEEEECCEESSTTCCBCCCEEEEETTTTEEEECCCCSSCC----BSCEEEEETTEEEEECCBCTT
T ss_pred Ccchhce-eEEEECCEEEEEeCCcCCCCCcccceEEEECCCCCcEeECCCCCCcc----cceeEEEECCEEEEEeCCCCC
Confidence 7654433 36778999999998541 223345799999999999988 666654 344567789999999987321
Q ss_pred CCCCcEEEEEeccCCCCCceEEEEEeccCCCceeeEEEEecCCcEEEEEee-C-----CeEEEEeCCCCeEEEee
Q 017748 270 DDDRPWDLWVMKEYGVNDSWTKLATLLNVGGGNVKPLVYSRSEDKVLLHAV-R-----GDLCWYDLERHRVRSIV 338 (366)
Q Consensus 270 ~~~~~l~iW~l~~~~~~~~W~~~~~i~~~~~~~~~~~~~~~~g~~i~~~~~-~-----~~~~~yd~~t~~~~~v~ 338 (366)
....-++|.++-. ..+|+++..++.... ..-.+ ..++ +|++... + ..+..||+++++|+.+-
T Consensus 161 -~~~~~~~~~yd~~--~~~W~~~~~~p~~r~--~~~~~-~~~~-~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~ 228 (315)
T 4asc_A 161 -RKCLNKMCVYDPK--KFEWKELAPMQTARS--LFGAT-VHDG-RIIVAAGVTDTGLTSSAEVYSITDNKWAPFE 228 (315)
T ss_dssp -SCBCCCEEEEETT--TTEEEECCCCSSCCB--SCEEE-EETT-EEEEEEEECSSSEEEEEEEEETTTTEEEEEC
T ss_pred -CcccceEEEEeCC--CCeEEECCCCCCchh--ceEEE-EECC-EEEEEeccCCCCccceEEEEECCCCeEEECC
Confidence 1113357777653 467999876655332 22222 2344 6777643 1 14999999999999993
|
| >2uvk_A YJHT; unknown function, hypothetical protein, sialic acid metabolism, kelch repeat, beta-propeller; HET: MSE; 1.50A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.35 E-value=3.1e-11 Score=109.77 Aligned_cols=223 Identities=15% Similarity=0.121 Sum_probs=132.6
Q ss_pred EEeeeceeEEeec--CCccEEEEEecc--ccceeecCCcC-CCCCCCCcceEEEeeecCCCCeEEEEEEEE-c--C--CC
Q 017748 102 IIGSCNGLLALED--SRRNIMLLLNPL--TKRHRVLPTFY-RDLSRCVPSLEGFGFDVGSGDFKLVKILAF-G--K--PM 171 (366)
Q Consensus 102 ~~~s~~Gll~~~~--~~~~~~~V~NP~--t~~~~~LP~~~-~~~~~~~~~~~~lg~d~~~~~ykvv~~~~~-~--~--~~ 171 (366)
..+..+|.|.+.. ....++ ++||. +++|..+|+++ ..+.. ..++.+ + + +|+.+.-. . . ..
T Consensus 14 ~~~~~~~~iyv~GG~~~~~~~-~~d~~~~~~~W~~~~~~p~~~R~~--~~~~~~--~---~--~lyv~GG~~~~~~~~~~ 83 (357)
T 2uvk_A 14 TGAIDNDTVYIGLGSAGTAWY-KLDTQAKDKKWTALAAFPGGPRDQ--ATSAFI--D---G--NLYVFGGIGKNSEGLTQ 83 (357)
T ss_dssp EEEEETTEEEEECGGGTTCEE-EEETTSSSCCEEECCCCTTCCCBS--CEEEEE--T---T--EEEEECCEEECTTSCEE
T ss_pred EEEEECCEEEEEeCcCCCeEE-EEccccCCCCeeECCCCCCCcCcc--ceEEEE--C---C--EEEEEcCCCCCCCccce
Confidence 3334466664443 345688 99998 49999999877 44321 222222 1 2 34443222 1 1 12
Q ss_pred CccEEEEEEecCCcEEEccCCC-cceecCCcceEECCcEEEEEeeCCCC-------------------------------
Q 017748 172 NYTEVAVFSLRVNSWRRIQDFP-YFWVTGTCSVFVNGALHWTAALNQDA------------------------------- 219 (366)
Q Consensus 172 ~~~~~~vyss~t~~W~~~~~~~-~~~~~~~~~v~~~G~lYw~~~~~~~~------------------------------- 219 (366)
....+++|+..+++|+.++.++ ... ....++.++|.+|.+++.....
T Consensus 84 ~~~~v~~yd~~~~~W~~~~~~~p~~r-~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 162 (357)
T 2uvk_A 84 VFNDVHKYNPKTNSWVKLMSHAPMGM-AGHVTFVHNGKAYVTGGVNQNIFNGYFEDLNEAGKDSTAIDKINAHYFDKKAE 162 (357)
T ss_dssp ECCCEEEEETTTTEEEECSCCCSSCC-SSEEEEEETTEEEEEECCCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHSSCGG
T ss_pred eeccEEEEeCCCCcEEECCCCCCccc-ccceEEEECCEEEEEeCcCCCcCcccccchhhcCCcccchhhhhhhhcccccc
Confidence 2457999999999999998876 322 2233566999999999754210
Q ss_pred --CCCcEEEEEECCCceeeee-CCCCccCCCCceEEEEEECCeEEEEEeecCCCCCCcEEEEEeccCCCCCceEEEEEec
Q 017748 220 --DRNDIIIAFDLKSEEFYQV-PLPPIVGIEGYYILLEALGGCLCLLCKFDDDDDDRPWDLWVMKEYGVNDSWTKLATLL 296 (366)
Q Consensus 220 --~~~~~i~~fD~~~~~~~~i-~lP~~~~~~~~~~~l~~~~g~L~l~~~~~~~~~~~~l~iW~l~~~~~~~~W~~~~~i~ 296 (366)
.....+.+||+++++|+.+ ++|.... ....++..+++|+++++.... ....-++|.++-+....+|.++..++
T Consensus 163 ~~~~~~~v~~yd~~~~~W~~~~~~p~~~~---~~~~~~~~~~~iyv~GG~~~~-~~~~~~v~~~d~d~~~~~W~~~~~~~ 238 (357)
T 2uvk_A 163 DYFFNKFLLSFDPSTQQWSYAGESPWYGT---AGAAVVNKGDKTWLINGEAKP-GLRTDAVFELDFTGNNLKWNKLAPVS 238 (357)
T ss_dssp GGCCCCEEEEEETTTTEEEEEEECSSCCC---BSCEEEEETTEEEEECCEEET-TEECCCEEEEECC---CEEEECCCSS
T ss_pred ccCCcccEEEEeCCCCcEEECCCCCCCCc---ccccEEEECCEEEEEeeecCC-CcccCceEEEEecCCCCcEEecCCCC
Confidence 0124899999999999988 6665431 224567789999999876532 11133566665322346799987764
Q ss_pred cCCCceeeEEEEecCCcEEEEEeeC-----------------------CeEEEEeCCCCeEEEeeeec
Q 017748 297 NVGGGNVKPLVYSRSEDKVLLHAVR-----------------------GDLCWYDLERHRVRSIVEID 341 (366)
Q Consensus 297 ~~~~~~~~~~~~~~~g~~i~~~~~~-----------------------~~~~~yd~~t~~~~~v~~~~ 341 (366)
.... .....++..++ .|++.... ..+..||+++++|+++-.+.
T Consensus 239 ~~~~-~~~~~~~~~~~-~iyv~GG~~~~~~~~~~~~g~~~~~~~~~~~~~~~~yd~~~~~W~~~~~~p 304 (357)
T 2uvk_A 239 SPDG-VAGGFAGISND-SLIFAGGAGFKGSRENYQNGKNYAHEGLKKSYSTDIHLWHNGKWDKSGELS 304 (357)
T ss_dssp TTTC-CBSCEEEEETT-EEEEECCEECTTHHHHHHTTCSSTTTTCCCEECCEEEECC---CEEEEECS
T ss_pred CCcc-cccceEEEECC-EEEEEcCccccCCcccccccceeccccccceeeEEEEecCCCceeeCCCCC
Confidence 3321 11222233344 77776531 13789999999999994443
|
| >2woz_A Kelch repeat and BTB domain-containing protein 10; protein binding, invasion and metastasis, UBL conjugation pathway, UBL protein folding; 2.00A {Rattus norvegicus} | Back alignment and structure |
|---|
Probab=99.34 E-value=3.7e-10 Score=100.90 Aligned_cols=202 Identities=12% Similarity=0.152 Sum_probs=125.5
Q ss_pred cEEEEEeccccceeecCCcCCCCCCCCcceEEEeeecCCCCeEEEEEEEE--cC-C---CCccEEEEEEecCCcEEEccC
Q 017748 118 NIMLLLNPLTKRHRVLPTFYRDLSRCVPSLEGFGFDVGSGDFKLVKILAF--GK-P---MNYTEVAVFSLRVNSWRRIQD 191 (366)
Q Consensus 118 ~~~~V~NP~t~~~~~LP~~~~~~~~~~~~~~~lg~d~~~~~ykvv~~~~~--~~-~---~~~~~~~vyss~t~~W~~~~~ 191 (366)
... ++||.|++|...|.+ .+..+ . ..+... ..+ +|+.+.-. .. . .....+++|+..+++|+.++.
T Consensus 25 ~~~-~yd~~~~~W~~~~~~-~~~~r-~--~~~~~~--~~~--~lyv~GG~~~~~~~~~~~~~~~~~~~d~~~~~W~~~~~ 95 (318)
T 2woz_A 25 AAV-AYDPMENECYLTALA-EQIPR-N--HSSIVT--QQN--QVYVVGGLYVDEENKDQPLQSYFFQLDNVSSEWVGLPP 95 (318)
T ss_dssp EEE-EEETTTTEEEEEEEC-TTSCS-S--EEEEEC--SSS--CEEEEESSCC-------CCCBEEEEEETTTTEEEECSC
T ss_pred ceE-EECCCCCceecccCC-ccCCc-c--ceEEEE--ECC--EEEEECCcccCccccCCCccccEEEEeCCCCcEEECCC
Confidence 367 899999999884432 22211 1 111111 112 23333211 01 1 112348999999999999988
Q ss_pred CCcceecCCcceEECCcEEEEEeeCC-CCCCCcEEEEEECCCceeeee-CCCCccCCCCceEEEEEECCeEEEEEeecCC
Q 017748 192 FPYFWVTGTCSVFVNGALHWTAALNQ-DADRNDIIIAFDLKSEEFYQV-PLPPIVGIEGYYILLEALGGCLCLLCKFDDD 269 (366)
Q Consensus 192 ~~~~~~~~~~~v~~~G~lYw~~~~~~-~~~~~~~i~~fD~~~~~~~~i-~lP~~~~~~~~~~~l~~~~g~L~l~~~~~~~ 269 (366)
+|..... ...+.++|.+|.+++... .......+.+||+.+++|+.+ ++|... .....+..+|+|+++++....
T Consensus 96 ~p~~r~~-~~~~~~~~~iyv~GG~~~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r----~~~~~~~~~~~iyv~GG~~~~ 170 (318)
T 2woz_A 96 LPSARCL-FGLGEVDDKIYVVAGKDLQTEASLDSVLCYDPVAAKWSEVKNLPIKV----YGHNVISHNGMIYCLGGKTDD 170 (318)
T ss_dssp BSSCBCS-CEEEEETTEEEEEEEEBTTTCCEEEEEEEEETTTTEEEEECCCSSCE----ESCEEEEETTEEEEECCEESS
T ss_pred CCccccc-cceEEECCEEEEEcCccCCCCcccceEEEEeCCCCCEeECCCCCCcc----cccEEEEECCEEEEEcCCCCC
Confidence 8765433 336778999999998752 222335799999999999988 677654 233456689999999886431
Q ss_pred CCCCcEEEEEeccCCCCCceEEEEEeccCCCceeeEEEEecCCcEEEEEee--C----CeEEEEeCCCCeEEEeeee
Q 017748 270 DDDRPWDLWVMKEYGVNDSWTKLATLLNVGGGNVKPLVYSRSEDKVLLHAV--R----GDLCWYDLERHRVRSIVEI 340 (366)
Q Consensus 270 ~~~~~l~iW~l~~~~~~~~W~~~~~i~~~~~~~~~~~~~~~~g~~i~~~~~--~----~~~~~yd~~t~~~~~v~~~ 340 (366)
....-++|.++-. ..+|+++..++.... ..-.++ .++ .|++... + ..+..||+++++|+.+-.+
T Consensus 171 -~~~~~~~~~yd~~--~~~W~~~~~~p~~r~--~~~~~~-~~~-~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~ 240 (318)
T 2woz_A 171 -KKCTNRVFIYNPK--KGDWKDLAPMKTPRS--MFGVAI-HKG-KIVIAGGVTEDGLSASVEAFDLKTNKWEVMTEF 240 (318)
T ss_dssp -SCBCCCEEEEETT--TTEEEEECCCSSCCB--SCEEEE-ETT-EEEEEEEEETTEEEEEEEEEETTTCCEEECCCC
T ss_pred -CCccceEEEEcCC--CCEEEECCCCCCCcc--cceEEE-ECC-EEEEEcCcCCCCccceEEEEECCCCeEEECCCC
Confidence 1112357777763 467999876654332 222222 344 7777642 1 2488999999999999333
|
| >2uvk_A YJHT; unknown function, hypothetical protein, sialic acid metabolism, kelch repeat, beta-propeller; HET: MSE; 1.50A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.22 E-value=1.5e-09 Score=98.58 Aligned_cols=156 Identities=11% Similarity=0.110 Sum_probs=98.5
Q ss_pred cEEEEEEecCCcEEEccCCCcceecCCcceEECCcEEEEEeeCCCCCCCcEEEEEEC--CCceeeee-CCCCccCCCCce
Q 017748 174 TEVAVFSLRVNSWRRIQDFPYFWVTGTCSVFVNGALHWTAALNQDADRNDIIIAFDL--KSEEFYQV-PLPPIVGIEGYY 250 (366)
Q Consensus 174 ~~~~vyss~t~~W~~~~~~~~~~~~~~~~v~~~G~lYw~~~~~~~~~~~~~i~~fD~--~~~~~~~i-~lP~~~~~~~~~ 250 (366)
..+++|+..+++|+.++.+|.........+.++|.+|.+++..........+..||+ ++++|+.+ .+|... ....
T Consensus 168 ~~v~~yd~~~~~W~~~~~~p~~~~~~~~~~~~~~~iyv~GG~~~~~~~~~~v~~~d~d~~~~~W~~~~~~~~~~--~~~~ 245 (357)
T 2uvk_A 168 KFLLSFDPSTQQWSYAGESPWYGTAGAAVVNKGDKTWLINGEAKPGLRTDAVFELDFTGNNLKWNKLAPVSSPD--GVAG 245 (357)
T ss_dssp CEEEEEETTTTEEEEEEECSSCCCBSCEEEEETTEEEEECCEEETTEECCCEEEEECC---CEEEECCCSSTTT--CCBS
T ss_pred ccEEEEeCCCCcEEECCCCCCCCcccccEEEECCEEEEEeeecCCCcccCceEEEEecCCCCcEEecCCCCCCc--cccc
Confidence 589999999999999987775433334467899999999875422212235778876 89999987 554433 1123
Q ss_pred EEEEEECCeEEEEEeecCCC---------------CCCcEEEEEeccCCCCCceEEEEEeccCCCceeeEEEEecCCcEE
Q 017748 251 ILLEALGGCLCLLCKFDDDD---------------DDRPWDLWVMKEYGVNDSWTKLATLLNVGGGNVKPLVYSRSEDKV 315 (366)
Q Consensus 251 ~~l~~~~g~L~l~~~~~~~~---------------~~~~l~iW~l~~~~~~~~W~~~~~i~~~~~~~~~~~~~~~~g~~i 315 (366)
..++..+|+|+++++....+ ....-++|.++-. ..+|.++..++.... .. .++..++ +|
T Consensus 246 ~~~~~~~~~iyv~GG~~~~~~~~~~~~g~~~~~~~~~~~~~~~~yd~~--~~~W~~~~~~p~~r~--~~-~~~~~~~-~i 319 (357)
T 2uvk_A 246 GFAGISNDSLIFAGGAGFKGSRENYQNGKNYAHEGLKKSYSTDIHLWH--NGKWDKSGELSQGRA--YG-VSLPWNN-SL 319 (357)
T ss_dssp CEEEEETTEEEEECCEECTTHHHHHHTTCSSTTTTCCCEECCEEEECC-----CEEEEECSSCCB--SS-EEEEETT-EE
T ss_pred ceEEEECCEEEEEcCccccCCcccccccceeccccccceeeEEEEecC--CCceeeCCCCCCCcc--cc-eeEEeCC-EE
Confidence 35678899999998864210 0111356666652 467999988776543 22 2233344 66
Q ss_pred EEEee-C------CeEEEEeCCCCeEEEe
Q 017748 316 LLHAV-R------GDLCWYDLERHRVRSI 337 (366)
Q Consensus 316 ~~~~~-~------~~~~~yd~~t~~~~~v 337 (366)
++... + ..++.+++++++|.+.
T Consensus 320 ~v~GG~~~~~~~~~~v~~l~~~~~~~~~~ 348 (357)
T 2uvk_A 320 LIIGGETAGGKAVTDSVLITVKDNKVTVQ 348 (357)
T ss_dssp EEEEEECGGGCEEEEEEEEEC-CCSCEEE
T ss_pred EEEeeeCCCCCEeeeEEEEEEcCcEeEee
Confidence 66643 1 1388899999999887
|
| >2zwa_A Leucine carboxyl methyltransferase 2; HET: SAH CIT; 1.70A {Saccharomyces cerevisiae} PDB: 2zw9_A* 2zzk_A* | Back alignment and structure |
|---|
Probab=99.17 E-value=1.4e-09 Score=107.35 Aligned_cols=203 Identities=11% Similarity=0.077 Sum_probs=125.7
Q ss_pred ccEEEEEeccccceeecC-Cc-----CCCCCCCCcceEEEeeecCCCCeEEEEEEEEcCC-CCccEEEEEEecCCcEEEc
Q 017748 117 RNIMLLLNPLTKRHRVLP-TF-----YRDLSRCVPSLEGFGFDVGSGDFKLVKILAFGKP-MNYTEVAVFSLRVNSWRRI 189 (366)
Q Consensus 117 ~~~~~V~NP~t~~~~~LP-~~-----~~~~~~~~~~~~~lg~d~~~~~ykvv~~~~~~~~-~~~~~~~vyss~t~~W~~~ 189 (366)
..+. ++||.|++|..++ +. +..+. ...++.+.. +. +++.+.-.... .....+++|+..+++|+.+
T Consensus 412 ~~v~-~yd~~~~~W~~~~~~~p~~~~p~~R~--~hs~~~~~~----~~-~lyv~GG~~~~~~~~~dv~~yd~~t~~W~~~ 483 (695)
T 2zwa_A 412 NEIL-QLSIHYDKIDMKNIEVSSSEVPVARM--CHTFTTISR----NN-QLLLIGGRKAPHQGLSDNWIFDMKTREWSMI 483 (695)
T ss_dssp CCEE-EEEECSSCEEEEECCCCCSCCCCCCB--SCEEEEETT----TT-EEEEECCBSSTTCBCCCCEEEETTTTEEEEC
T ss_pred CcEE-EEECCCCeEEEeccCCCCCCCCcccc--ceEEEEEcc----CC-EEEEEcCCCCCCCccccEEEEeCCCCcEEEC
Confidence 4578 9999999999998 52 22221 122222210 11 34444322222 2346799999999999999
Q ss_pred cCCCcceecCCcceEE-CCcEEEEEeeCCCCCCCcEEEEEECCCceeeeeC----CCCccCCCCceEEEEEEC---CeEE
Q 017748 190 QDFPYFWVTGTCSVFV-NGALHWTAALNQDADRNDIIIAFDLKSEEFYQVP----LPPIVGIEGYYILLEALG---GCLC 261 (366)
Q Consensus 190 ~~~~~~~~~~~~~v~~-~G~lYw~~~~~~~~~~~~~i~~fD~~~~~~~~i~----lP~~~~~~~~~~~l~~~~---g~L~ 261 (366)
+.+|....... ++.+ +|.+|.+++..... .+.+||+++++|+.+. +|... .....++++ |+||
T Consensus 484 ~~~p~~R~~h~-~~~~~~~~iyv~GG~~~~~----~v~~yd~~t~~W~~~~~~g~~p~~r----~~~~a~v~~~~~~~iy 554 (695)
T 2zwa_A 484 KSLSHTRFRHS-ACSLPDGNVLILGGVTEGP----AMLLYNVTEEIFKDVTPKDEFFQNS----LVSAGLEFDPVSKQGI 554 (695)
T ss_dssp CCCSBCCBSCE-EEECTTSCEEEECCBCSSC----SEEEEETTTTEEEECCCSSGGGGSC----CBSCEEEEETTTTEEE
T ss_pred CCCCCCcccce-EEEEcCCEEEEECCCCCCC----CEEEEECCCCceEEccCCCCCCCcc----cceeEEEEeCCCCEEE
Confidence 88876544333 4554 99999998875332 6999999999999885 44443 122223334 8999
Q ss_pred EEEeecCCCCCCcEEEEEeccCCCCCc------eEEEEEeccCCCceeeEEEEecCCcEEEEEee---------CCeEEE
Q 017748 262 LLCKFDDDDDDRPWDLWVMKEYGVNDS------WTKLATLLNVGGGNVKPLVYSRSEDKVLLHAV---------RGDLCW 326 (366)
Q Consensus 262 l~~~~~~~~~~~~l~iW~l~~~~~~~~------W~~~~~i~~~~~~~~~~~~~~~~g~~i~~~~~---------~~~~~~ 326 (366)
++++....+....-++|.++-. ... |.++..++...- ...-.++..++ .|++... ...+..
T Consensus 555 v~GG~~~~~~~~~~~v~~yd~~--~~~w~~~~~W~~~~~~p~~~R-~~~~~~~~~~~-~iyv~GG~~~~~~~~~~~~v~~ 630 (695)
T 2zwa_A 555 ILGGGFMDQTTVSDKAIIFKYD--AENATEPITVIKKLQHPLFQR-YGSQIKYITPR-KLLIVGGTSPSGLFDRTNSIIS 630 (695)
T ss_dssp EECCBCTTSSCBCCEEEEEEEC--TTCSSCCEEEEEEEECGGGCC-BSCEEEEEETT-EEEEECCBCSSCCCCTTTSEEE
T ss_pred EECCcCCCCCeeeCcEEEEEcc--CCccccceEEEEcCCCCCCCc-ccceEEEeCCC-EEEEECCccCCCCCCCCCeEEE
Confidence 9998743211113456666643 234 888877642221 12333333334 7777643 124999
Q ss_pred EeCCCCeEEEeeeec
Q 017748 327 YDLERHRVRSIVEID 341 (366)
Q Consensus 327 yd~~t~~~~~v~~~~ 341 (366)
||+++++|+.+ .+.
T Consensus 631 yd~~t~~W~~~-~~p 644 (695)
T 2zwa_A 631 LDPLSETLTSI-PIS 644 (695)
T ss_dssp EETTTTEEEEC-CCC
T ss_pred EECCCCeEEEe-ecc
Confidence 99999999977 654
|
| >2e31_A FBS1, F-box only protein 2; ubiquitin, SCF, ubiquitin ligase, FBS1; 2.40A {Mus musculus} PDB: 2e32_A | Back alignment and structure |
|---|
Probab=99.15 E-value=1.2e-11 Score=107.14 Aligned_cols=51 Identities=25% Similarity=0.413 Sum_probs=47.7
Q ss_pred CCCCCCCcHHHHHHHHccCCcccce-eeeccchhhhhhcCChhHHHHHHhcc
Q 017748 1 METSVQLPLDLIVDILIRLPVRSLA-RFRCVSRSFRSLIDGQDFVNRYVNHS 51 (366)
Q Consensus 1 ~~~~~~LP~dll~~IL~rLP~~~l~-r~r~VcK~W~~li~s~~F~~~~~~~~ 51 (366)
|+.+..||+||+.+||+|||+++|+ ||++|||+|+++++++.|.+.+..+.
T Consensus 48 ~~~~~~LP~ell~~Il~~Lp~~~L~~r~~~VCk~Wr~l~~~~~~w~~~~~~~ 99 (297)
T 2e31_A 48 VEYLAELPEPLLLRVLAELPATELVQACRLVCLRWKELVDGAPLWLLKCQQE 99 (297)
T ss_dssp CCCTTSSCHHHHHHHHHTSCHHHHHHTGGGTCHHHHHHHTSHHHHHHHHHHT
T ss_pred ccChhhCCHHHHHHHHHcCCHHHHHHHHHHHhHHHHHHhcChHHHHHHhhcc
Confidence 4577899999999999999999999 99999999999999999999988766
|
| >1fs1_A SKP2 F-BOX, cyclin A/CDK2-associated P19; F-BOX, LRR, leucine-rich repeat, SCF, ubiquitin, ubiquitin protein ligase; 1.80A {Homo sapiens} SCOP: a.158.1.1 PDB: 1ldk_E | Back alignment and structure |
|---|
Probab=99.15 E-value=8.1e-12 Score=79.77 Aligned_cols=44 Identities=18% Similarity=0.257 Sum_probs=39.3
Q ss_pred CCCCCCcHHHHHHHHccCCcccceeeeccchhhhhhcCChhHHH
Q 017748 2 ETSVQLPLDLIVDILIRLPVRSLARFRCVSRSFRSLIDGQDFVN 45 (366)
Q Consensus 2 ~~~~~LP~dll~~IL~rLP~~~l~r~r~VcK~W~~li~s~~F~~ 45 (366)
..+..||+|++.+||++||++++.+++.|||+|+.++.++.|.+
T Consensus 7 ~~~~~LP~eil~~I~~~L~~~dl~~~~~Vck~w~~~~~~~~lW~ 50 (53)
T 1fs1_A 7 VSWDSLPDELLLGIFSCLCLPELLKVSGVCKRWYRLASDESLWQ 50 (53)
T ss_dssp --CCSSCHHHHHHHHTTSCGGGHHHHHTTCHHHHHHHTCGGGC-
T ss_pred CCHHHCCHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCChHHHH
Confidence 35788999999999999999999999999999999999998754
|
| >2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B* | Back alignment and structure |
|---|
Probab=99.10 E-value=2.3e-07 Score=86.46 Aligned_cols=285 Identities=9% Similarity=0.053 Sum_probs=150.4
Q ss_pred CCCCCCcHHHHHHHHccCCcccceeeeccchhhhhhcCChhHHHHHHhcccccCCceEEEEeeecCCceeEEEeec----
Q 017748 2 ETSVQLPLDLIVDILIRLPVRSLARFRCVSRSFRSLIDGQDFVNRYVNHSIETNSNLGLFVSVENSKWKRRYYSLS---- 77 (366)
Q Consensus 2 ~~~~~LP~dll~~IL~rLP~~~l~r~r~VcK~W~~li~s~~F~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~---- 77 (366)
..++.||+|++..||+.|++++|.++..|||+|+.++.++.+.+.......-..+. . ....... .......+
T Consensus 17 d~~~~lp~e~~~~i~~~l~~~~l~~~~~v~~~~~~~~~~~~~w~~~~~~~~~~~~~-~--~~~~~~~-~~~~~~~~wk~~ 92 (445)
T 2ovr_B 17 DFISLLPKELALYVLSFLEPKDLLQAAQTCRYWRILAEDNLLWREKCKEEGIDEPL-H--IKRRKVI-KPGFIHSPWKSA 92 (445)
T ss_dssp STTTSSCHHHHHHHHTTSCHHHHHHHTTSCHHHHHHHTCSHHHHHHHTTTTCCSCC-C--CCC--CC-SSCCCCCHHHHH
T ss_pred ChhHHCCHHHHHHHHHhCCHHHHHHHHHHhHHHHhhcCchhHhhhheeeccccccc-c--cccceec-CCCccCCcHHHH
Confidence 35778999999999999999999999999999999999998888765433211100 0 0000000 00000000
Q ss_pred c-cccCC-CCcce--ec--CCCccCCCc-eEEEeeeceeEEeecCCccEEEEEeccccceeecCCcCCCCCCCCcceEEE
Q 017748 78 F-DQYAF-DNCLE--ID--LPLMKNCKF-GFIIGSCNGLLALEDSRRNIMLLLNPLTKRHRVLPTFYRDLSRCVPSLEGF 150 (366)
Q Consensus 78 ~-~~~~~-~~~~~--~~--~~~~~~~~~-~~~~~s~~Gll~~~~~~~~~~~V~NP~t~~~~~LP~~~~~~~~~~~~~~~l 150 (366)
+ .+... ..+.. .. ..+..+... ...+...+.+++....+..+. |||..+++...--.. + ......+
T Consensus 93 ~~~~~~~~~~w~~~~~~~~~~l~~h~~~v~~~~~~~g~~l~sg~~dg~i~-vwd~~~~~~~~~~~~--h----~~~v~~~ 165 (445)
T 2ovr_B 93 YIRQHRIDTNWRRGELKSPKVLKGHDDHVITCLQFCGNRIVSGSDDNTLK-VWSAVTGKCLRTLVG--H----TGGVWSS 165 (445)
T ss_dssp HHHHHHHHHHHHHSCCCCCEEEECSTTSCEEEEEEETTEEEEEETTSCEE-EEETTTCCEEEECCC--C----SSCEEEE
T ss_pred HhhhhhhhhcccCCCcceeEEecccCCCcEEEEEEcCCEEEEEECCCcEE-EEECCCCcEEEEEcC--C----CCCEEEE
Confidence 0 00000 00000 00 001111111 234555566666666677888 999988875432111 1 1123445
Q ss_pred eeecCCCCeEEEEEEEEcCCCCccEEEEEEecCCcEEE-ccCCCcceecCCcceEECCcEEEEEeeCCCCCCCcEEEEEE
Q 017748 151 GFDVGSGDFKLVKILAFGKPMNYTEVAVFSLRVNSWRR-IQDFPYFWVTGTCSVFVNGALHWTAALNQDADRNDIIIAFD 229 (366)
Q Consensus 151 g~d~~~~~ykvv~~~~~~~~~~~~~~~vyss~t~~W~~-~~~~~~~~~~~~~~v~~~G~lYw~~~~~~~~~~~~~i~~fD 229 (366)
.++ +.+ ++... ....+.+++..++.-.. +..-. ..-.++..+|.....+..+ ..|..+|
T Consensus 166 ~~~---~~~-l~s~~------~dg~i~vwd~~~~~~~~~~~~h~----~~v~~~~~~~~~l~s~s~d------g~i~~wd 225 (445)
T 2ovr_B 166 QMR---DNI-IISGS------TDRTLKVWNAETGECIHTLYGHT----STVRCMHLHEKRVVSGSRD------ATLRVWD 225 (445)
T ss_dssp EEE---TTE-EEEEE------TTSCEEEEETTTTEEEEEECCCS----SCEEEEEEETTEEEEEETT------SEEEEEE
T ss_pred Eec---CCE-EEEEe------CCCeEEEEECCcCcEEEEECCCC----CcEEEEEecCCEEEEEeCC------CEEEEEE
Confidence 554 222 22222 14468888887764321 11111 1112344556554444433 3799999
Q ss_pred CCCceeee-eCCCCccCCCCceEEEEEECCeEEEEEeecCCCCCCcEEEEEeccCCCCCceEEEEEeccCCCceeeEEEE
Q 017748 230 LKSEEFYQ-VPLPPIVGIEGYYILLEALGGCLCLLCKFDDDDDDRPWDLWVMKEYGVNDSWTKLATLLNVGGGNVKPLVY 308 (366)
Q Consensus 230 ~~~~~~~~-i~lP~~~~~~~~~~~l~~~~g~L~l~~~~~~~~~~~~l~iW~l~~~~~~~~W~~~~~i~~~~~~~~~~~~~ 308 (366)
+.+.+... +..... ...-...+|...+++..+. .+.+|-++.. ..+..+.... ..+.++
T Consensus 226 ~~~~~~~~~~~~~~~------~v~~~~~~~~~l~~~~~dg-----~i~iwd~~~~------~~~~~~~~~~---~~v~~~ 285 (445)
T 2ovr_B 226 IETGQCLHVLMGHVA------AVRCVQYDGRRVVSGAYDF-----MVKVWDPETE------TCLHTLQGHT---NRVYSL 285 (445)
T ss_dssp SSSCCEEEEEECCSS------CEEEEEECSSCEEEEETTS-----CEEEEEGGGT------EEEEEECCCS---SCEEEE
T ss_pred CCCCcEEEEEcCCcc------cEEEEEECCCEEEEEcCCC-----EEEEEECCCC------cEeEEecCCC---CceEEE
Confidence 98765432 222221 1222233777766666555 8999987752 2333443211 122233
Q ss_pred ecCCcEEEEEeeCCeEEEEeCCCCeEEEe
Q 017748 309 SRSEDKVLLHAVRGDLCWYDLERHRVRSI 337 (366)
Q Consensus 309 ~~~g~~i~~~~~~~~~~~yd~~t~~~~~v 337 (366)
..++..++....++.+..||+++++....
T Consensus 286 ~~~~~~l~~~~~d~~i~i~d~~~~~~~~~ 314 (445)
T 2ovr_B 286 QFDGIHVVSGSLDTSIRVWDVETGNCIHT 314 (445)
T ss_dssp EECSSEEEEEETTSCEEEEETTTCCEEEE
T ss_pred EECCCEEEEEeCCCeEEEEECCCCCEEEE
Confidence 33565677677777899999998875543
|
| >3v7d_B Cell division control protein 4; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_B* 3mks_B* | Back alignment and structure |
|---|
Probab=99.00 E-value=1.8e-06 Score=80.73 Aligned_cols=44 Identities=16% Similarity=0.307 Sum_probs=38.8
Q ss_pred CCCCcHHHHHHHHccCCcccceeeeccchhhhhhcCC-hhHHHHH
Q 017748 4 SVQLPLDLIVDILIRLPVRSLARFRCVSRSFRSLIDG-QDFVNRY 47 (366)
Q Consensus 4 ~~~LP~dll~~IL~rLP~~~l~r~r~VcK~W~~li~s-~~F~~~~ 47 (366)
++.||+|++.+||+.||+++|+++..|||+|+.++.+ +...+..
T Consensus 15 ~~~lp~~~~~~i~~~l~~~~l~~~~~v~~~w~~~~~~~~~~w~~~ 59 (464)
T 3v7d_B 15 ITSLPFEISLKIFNYLQFEDIINSLGVSQNWNKIIRKSTSLWKKL 59 (464)
T ss_dssp HHHSCHHHHHHHHTTSCHHHHHHHHTTCHHHHHHHTTCHHHHHHH
T ss_pred hHHCCHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHcCCHHHHHHH
Confidence 4569999999999999999999999999999999998 6655443
|
| >1p22_A F-BOX/WD-repeat protein 1A; ubiquitination, degradation, signaling protein; HET: SEP; 2.95A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 | Back alignment and structure |
|---|
Probab=98.91 E-value=7.4e-08 Score=89.65 Aligned_cols=288 Identities=12% Similarity=0.084 Sum_probs=144.2
Q ss_pred CCCCcHH----HHHHHHccCCcccceeeeccchhhhhhcCChhHHHHHHhcccccC---------Cc--eEEEEeeecCC
Q 017748 4 SVQLPLD----LIVDILIRLPVRSLARFRCVSRSFRSLIDGQDFVNRYVNHSIETN---------SN--LGLFVSVENSK 68 (366)
Q Consensus 4 ~~~LP~d----ll~~IL~rLP~~~l~r~r~VcK~W~~li~s~~F~~~~~~~~~~~~---------~~--~~l~~~~~~~~ 68 (366)
++.||+| |+..||+.|++++|.++..|||+|+.++.++.+.+....+..... .. ..++-+.....
T Consensus 11 ~~~lp~e~~~~~~~~i~~~l~~~~l~~~~~v~~~w~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~ 90 (435)
T 1p22_A 11 ITALPARGLDHIAENILSYLDAKSLCAAELVCKEWYRVTSDGMLWKKLIERMVRTDSLWRGLAERRGWGQYLFKNKPPDG 90 (435)
T ss_dssp HHHTGGGTCHHHHHHHHTTCCHHHHHHHHHHCHHHHHHHHHTTHHHHHHHHHHTSCHHHHHHHHSSSGGGGCC-------
T ss_pred HHHCCcchHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcChHHHHHHHHhhcCcchhhhhhhhccchhhhhhccCCCCC
Confidence 3569999 999999999999999999999999999998887766544321100 00 00010000000
Q ss_pred c--eeEEEeeccccc-----CC-CCcceec---CCC---ccCCCceEEEeeeceeEEeecCCccEEEEEeccccceeecC
Q 017748 69 W--KRRYYSLSFDQY-----AF-DNCLEID---LPL---MKNCKFGFIIGSCNGLLALEDSRRNIMLLLNPLTKRHRVLP 134 (366)
Q Consensus 69 ~--~~~~~~~~~~~~-----~~-~~~~~~~---~~~---~~~~~~~~~~~s~~Gll~~~~~~~~~~~V~NP~t~~~~~LP 134 (366)
. ...++...+... .. ..|..-. ..+ .........++..+.+++....+..+. |+|..+++....-
T Consensus 91 ~~~~~~~~~~~~~~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~v~~~~~d~~~l~~g~~dg~i~-iwd~~~~~~~~~~ 169 (435)
T 1p22_A 91 NAPPNSFYRALYPKIIQDIETIESNWRCGRHSLQRIHCRSETSKGVYCLQYDDQKIVSGLRDNTIK-IWDKNTLECKRIL 169 (435)
T ss_dssp --CCSHHHHHHHHHHHHHHHHHHHHTTTCCCCCCCEECCCSSCCCEEEEECCSSEEEEEESSSCEE-EEESSSCCEEEEE
T ss_pred CCCchhhHHhhhhhhhcchhHHHhhhccCCccceEEecccCCCCcEEEEEECCCEEEEEeCCCeEE-EEeCCCCeEEEEE
Confidence 0 000000000000 00 0000000 000 011223344455555665555667788 9999887764432
Q ss_pred CcCCCCCCCCcceEEEeeecCCCCeEEEEEEEEcCCCCccEEEEEEecCCcEEE-ccCCCcceecCCcceEECCcEEEEE
Q 017748 135 TFYRDLSRCVPSLEGFGFDVGSGDFKLVKILAFGKPMNYTEVAVFSLRVNSWRR-IQDFPYFWVTGTCSVFVNGALHWTA 213 (366)
Q Consensus 135 ~~~~~~~~~~~~~~~lg~d~~~~~ykvv~~~~~~~~~~~~~~~vyss~t~~W~~-~~~~~~~~~~~~~~v~~~G~lYw~~ 213 (366)
... .....++.+| +.+ ++.... ...+.+++..++.-.. +..-. ..-.++..++.....+
T Consensus 170 ~~h------~~~v~~l~~~---~~~-l~sg~~------dg~i~vwd~~~~~~~~~~~~h~----~~v~~l~~~~~~l~s~ 229 (435)
T 1p22_A 170 TGH------TGSVLCLQYD---ERV-IITGSS------DSTVRVWDVNTGEMLNTLIHHC----EAVLHLRFNNGMMVTC 229 (435)
T ss_dssp CCC------SSCEEEEECC---SSE-EEEEET------TSCEEEEESSSCCEEEEECCCC----SCEEEEECCTTEEEEE
T ss_pred cCC------CCcEEEEEEC---CCE-EEEEcC------CCeEEEEECCCCcEEEEEcCCC----CcEEEEEEcCCEEEEe
Confidence 211 1133445553 232 222221 4468888888765322 11111 1112344455544444
Q ss_pred eeCCCCCCCcEEEEEECCCceeeee--CCCCccCCCCceEEEEEECCeEEEEEeecCCCCCCcEEEEEeccCCCCCceEE
Q 017748 214 ALNQDADRNDIIIAFDLKSEEFYQV--PLPPIVGIEGYYILLEALGGCLCLLCKFDDDDDDRPWDLWVMKEYGVNDSWTK 291 (366)
Q Consensus 214 ~~~~~~~~~~~i~~fD~~~~~~~~i--~lP~~~~~~~~~~~l~~~~g~L~l~~~~~~~~~~~~l~iW~l~~~~~~~~W~~ 291 (366)
..+ ..|..+|+.+..-... .+.... ........+|...+++..+. .+.+|-+... ..
T Consensus 230 s~d------g~i~vwd~~~~~~~~~~~~~~~~~----~~v~~~~~~~~~l~s~~~dg-----~i~vwd~~~~------~~ 288 (435)
T 1p22_A 230 SKD------RSIAVWDMASPTDITLRRVLVGHR----AAVNVVDFDDKYIVSASGDR-----TIKVWNTSTC------EF 288 (435)
T ss_dssp ETT------SCEEEEECSSSSCCEEEEEECCCS----SCEEEEEEETTEEEEEETTS-----EEEEEETTTC------CE
T ss_pred eCC------CcEEEEeCCCCCCceeeeEecCCC----CcEEEEEeCCCEEEEEeCCC-----eEEEEECCcC------cE
Confidence 433 3688999987543211 111111 12222233666666565554 8999987752 22
Q ss_pred EEEeccCCCceeeEEEEecCCcEEEEEeeCCeEEEEeCCCCeEEE
Q 017748 292 LATLLNVGGGNVKPLVYSRSEDKVLLHAVRGDLCWYDLERHRVRS 336 (366)
Q Consensus 292 ~~~i~~~~~~~~~~~~~~~~g~~i~~~~~~~~~~~yd~~t~~~~~ 336 (366)
+..+.... ..+.++..+++.++....++.+..||+++++...
T Consensus 289 ~~~~~~~~---~~v~~~~~~~~~l~~g~~dg~i~iwd~~~~~~~~ 330 (435)
T 1p22_A 289 VRTLNGHK---RGIACLQYRDRLVVSGSSDNTIRLWDIECGACLR 330 (435)
T ss_dssp EEEEECCS---SCEEEEEEETTEEEEEETTSCEEEEETTTCCEEE
T ss_pred EEEEcCCC---CcEEEEEeCCCEEEEEeCCCeEEEEECCCCCEEE
Confidence 33443211 1222333345467767777789999999887543
|
| >1k3i_A Galactose oxidase precursor; blade beta propeller, prosequence form, precursor of copper enzyme., oxidoreductase; 1.40A {Fusarium SP} SCOP: b.1.18.2 b.18.1.1 b.69.1.1 PDB: 1gof_A 1gog_A 1goh_A 2eie_A 2jkx_A 2vz1_A 2vz3_A 2eic_A 2eib_A 1t2x_A 2eid_A 2wq8_A | Back alignment and structure |
|---|
Probab=98.79 E-value=7.2e-08 Score=94.79 Aligned_cols=203 Identities=10% Similarity=-0.039 Sum_probs=120.6
Q ss_pred cEEEEEeccccceeecCCcCCCCCCCCcceEEEeeecCCCCeEEEEEEEEcCCCCccEEEEEEecCCcEEEccCCCccee
Q 017748 118 NIMLLLNPLTKRHRVLPTFYRDLSRCVPSLEGFGFDVGSGDFKLVKILAFGKPMNYTEVAVFSLRVNSWRRIQDFPYFWV 197 (366)
Q Consensus 118 ~~~~V~NP~t~~~~~LP~~~~~~~~~~~~~~~lg~d~~~~~ykvv~~~~~~~~~~~~~~~vyss~t~~W~~~~~~~~~~~ 197 (366)
.+. ++||.|++|..++.++..+.. .....++..+ + +++.+.-.. ...+++|+..+++|+.++.++....
T Consensus 220 ~~~-~yd~~t~~w~~~~~~~~~~~~-~~~~~~~~~~---g--~lyv~GG~~----~~~v~~yd~~t~~W~~~~~~~~~R~ 288 (656)
T 1k3i_A 220 LTS-SWDPSTGIVSDRTVTVTKHDM-FCPGISMDGN---G--QIVVTGGND----AKKTSLYDSSSDSWIPGPDMQVARG 288 (656)
T ss_dssp EEE-EECTTTCCBCCCEEEECSCCC-SSCEEEECTT---S--CEEEECSSS----TTCEEEEEGGGTEEEECCCCSSCCS
T ss_pred EEE-EEeCCCCcEEeCcccCCCCCC-ccccccCCCC---C--CEEEeCCCC----CCceEEecCcCCceeECCCCCcccc
Confidence 466 999999999999877655432 1112222221 1 344432111 2379999999999999988776443
Q ss_pred cCCcceEE-CCcEEEEEeeCCCCCCCcEEEEEECCCceeeee------CCCCccC-----CCCc----------------
Q 017748 198 TGTCSVFV-NGALHWTAALNQDADRNDIIIAFDLKSEEFYQV------PLPPIVG-----IEGY---------------- 249 (366)
Q Consensus 198 ~~~~~v~~-~G~lYw~~~~~~~~~~~~~i~~fD~~~~~~~~i------~lP~~~~-----~~~~---------------- 249 (366)
. ..++.+ +|++|.+++..........+..||+++++|..+ ++|.... ....
T Consensus 289 ~-~s~~~~~dg~iyv~GG~~~~~~~~~~~e~yd~~t~~W~~~~~~~~~p~~~~~~~~~~~~~~~iyv~Gg~~g~~~~~~~ 367 (656)
T 1k3i_A 289 Y-QSSATMSDGRVFTIGGSWSGGVFEKNGEVYSPSSKTWTSLPNAKVNPMLTADKQGLYRSDNHAWLFGWKKGSVFQAGP 367 (656)
T ss_dssp S-CEEEECTTSCEEEECCCCCSSSCCCCEEEEETTTTEEEEETTSCSGGGCCCCTTGGGTTTCSCCEEECGGGCEEECCS
T ss_pred c-cceEEecCCeEEEEeCcccCCcccccceEeCCCCCcceeCCCccccccccccccceeecCCceEEEECCCCcEEEecC
Confidence 2 235666 999999998433222334799999999999886 2332210 0000
Q ss_pred -------------------------------eEEEEE----ECCeEEEEEeecCCC---CCC-cEEEEEeccCCCCCceE
Q 017748 250 -------------------------------YILLEA----LGGCLCLLCKFDDDD---DDR-PWDLWVMKEYGVNDSWT 290 (366)
Q Consensus 250 -------------------------------~~~l~~----~~g~L~l~~~~~~~~---~~~-~l~iW~l~~~~~~~~W~ 290 (366)
....++ .+|+|+++++....+ ... ...++..+. ....|.
T Consensus 368 ~~~v~~yd~~~~~w~~~~~~~~~~~~~~~~~~~~~av~~~~~~~~i~v~GG~~~~~~~~~~~~~~~v~~yd~--~~~~W~ 445 (656)
T 1k3i_A 368 STAMNWYYTSGSGDVKSAGKRQSNRGVAPDAMCGNAVMYDAVKGKILTFGGSPDYQDSDATTNAHIITLGEP--GTSPNT 445 (656)
T ss_dssp SSEEEEEECSTTCEEEEEEECEETTEECCCCBTCEEEEEETTTTEEEEECCBSSSSSSBCCCCEEEEECCST--TSCCEE
T ss_pred ccceeeeecCCcceeecCCccccccccCCCCCCCceEeccCCCCeEEEEeCCCCCCCCCcCCcceEEEcCCC--CCCCee
Confidence 001122 378999998753211 011 124555543 346799
Q ss_pred EEE--EeccCCCceeeEEEEecCCcEEEEEee-C-----------CeEEEEeCCCCeEEEe
Q 017748 291 KLA--TLLNVGGGNVKPLVYSRSEDKVLLHAV-R-----------GDLCWYDLERHRVRSI 337 (366)
Q Consensus 291 ~~~--~i~~~~~~~~~~~~~~~~g~~i~~~~~-~-----------~~~~~yd~~t~~~~~v 337 (366)
++. .++.... ..-.++..+| +|++... + ..+..||+++++|+.+
T Consensus 446 ~~~~~~mp~~R~--~~~~~~l~~g-~i~v~GG~~~~~~~~~~~~~~~v~~ydp~t~~W~~~ 503 (656)
T 1k3i_A 446 VFASNGLYFART--FHTSVVLPDG-STFITGGQRRGIPFEDSTPVFTPEIYVPEQDTFYKQ 503 (656)
T ss_dssp EECTTCCSSCCB--SCEEEECTTS-CEEEECCBSBCCTTCCCSBCCCCEEEEGGGTEEEEC
T ss_pred EEccCCCCCCcc--cCCeEECCCC-CEEEECCcccCcCcCCCCcccceEEEcCCCCceeec
Confidence 876 5554332 3333444456 6776643 1 2489999999999988
|
| >2zwa_A Leucine carboxyl methyltransferase 2; HET: SAH CIT; 1.70A {Saccharomyces cerevisiae} PDB: 2zw9_A* 2zzk_A* | Back alignment and structure |
|---|
Probab=98.73 E-value=2.2e-07 Score=91.70 Aligned_cols=152 Identities=11% Similarity=0.146 Sum_probs=104.8
Q ss_pred CccEEEEEEecCCcEEEcc-C-----CCcceecCCcceEE--CCcEEEEEeeCCCCCCCcEEEEEECCCceeeee-CCCC
Q 017748 172 NYTEVAVFSLRVNSWRRIQ-D-----FPYFWVTGTCSVFV--NGALHWTAALNQDADRNDIIIAFDLKSEEFYQV-PLPP 242 (366)
Q Consensus 172 ~~~~~~vyss~t~~W~~~~-~-----~~~~~~~~~~~v~~--~G~lYw~~~~~~~~~~~~~i~~fD~~~~~~~~i-~lP~ 242 (366)
....+++|+..+++|+.++ . +|... .....+.+ +|.+|.+++..........+..||+.+++|+.+ ++|.
T Consensus 410 ~~~~v~~yd~~~~~W~~~~~~~p~~~~p~~R-~~hs~~~~~~~~~lyv~GG~~~~~~~~~dv~~yd~~t~~W~~~~~~p~ 488 (695)
T 2zwa_A 410 RVNEILQLSIHYDKIDMKNIEVSSSEVPVAR-MCHTFTTISRNNQLLLIGGRKAPHQGLSDNWIFDMKTREWSMIKSLSH 488 (695)
T ss_dssp BCCCEEEEEECSSCEEEEECCCCCSCCCCCC-BSCEEEEETTTTEEEEECCBSSTTCBCCCCEEEETTTTEEEECCCCSB
T ss_pred CcCcEEEEECCCCeEEEeccCCCCCCCCccc-cceEEEEEccCCEEEEEcCCCCCCCccccEEEEeCCCCcEEECCCCCC
Confidence 3557899999999999987 5 33322 23346778 999999998754322234699999999999998 6665
Q ss_pred ccCCCCceEEEEEE-CCeEEEEEeecCCCCCCcEEEEEeccCCCCCceEEEEE---eccCCCceeeE-EEEecCCcEEEE
Q 017748 243 IVGIEGYYILLEAL-GGCLCLLCKFDDDDDDRPWDLWVMKEYGVNDSWTKLAT---LLNVGGGNVKP-LVYSRSEDKVLL 317 (366)
Q Consensus 243 ~~~~~~~~~~l~~~-~g~L~l~~~~~~~~~~~~l~iW~l~~~~~~~~W~~~~~---i~~~~~~~~~~-~~~~~~g~~i~~ 317 (366)
.. .....+.+ +|+||++++.... . ++|.++-. ..+|+.+.. ++.... ..- ..+..+++.|++
T Consensus 489 ~R----~~h~~~~~~~~~iyv~GG~~~~----~-~v~~yd~~--t~~W~~~~~~g~~p~~r~--~~~a~v~~~~~~~iyv 555 (695)
T 2zwa_A 489 TR----FRHSACSLPDGNVLILGGVTEG----P-AMLLYNVT--EEIFKDVTPKDEFFQNSL--VSAGLEFDPVSKQGII 555 (695)
T ss_dssp CC----BSCEEEECTTSCEEEECCBCSS----C-SEEEEETT--TTEEEECCCSSGGGGSCC--BSCEEEEETTTTEEEE
T ss_pred Cc----ccceEEEEcCCEEEEECCCCCC----C-CEEEEECC--CCceEEccCCCCCCCccc--ceeEEEEeCCCCEEEE
Confidence 54 33345554 9999999987664 3 77888763 467999876 443332 222 223333247887
Q ss_pred EeeC--------CeEEEEeCCCCe------EEEe
Q 017748 318 HAVR--------GDLCWYDLERHR------VRSI 337 (366)
Q Consensus 318 ~~~~--------~~~~~yd~~t~~------~~~v 337 (366)
.... ..+..||+++++ |+.+
T Consensus 556 ~GG~~~~~~~~~~~v~~yd~~~~~w~~~~~W~~~ 589 (695)
T 2zwa_A 556 LGGGFMDQTTVSDKAIIFKYDAENATEPITVIKK 589 (695)
T ss_dssp ECCBCTTSSCBCCEEEEEEECTTCSSCCEEEEEE
T ss_pred ECCcCCCCCeeeCcEEEEEccCCccccceEEEEc
Confidence 7532 249999999999 8887
|
| >1k3i_A Galactose oxidase precursor; blade beta propeller, prosequence form, precursor of copper enzyme., oxidoreductase; 1.40A {Fusarium SP} SCOP: b.1.18.2 b.18.1.1 b.69.1.1 PDB: 1gof_A 1gog_A 1goh_A 2eie_A 2jkx_A 2vz1_A 2vz3_A 2eic_A 2eib_A 1t2x_A 2eid_A 2wq8_A | Back alignment and structure |
|---|
Probab=98.44 E-value=1.6e-06 Score=85.08 Aligned_cols=194 Identities=10% Similarity=0.033 Sum_probs=113.0
Q ss_pred EEeccccceeecCCcCCCCCCCCcceEEEeeecCCCCeEEEEEEEEcCC------CCccEEEEEEecCCcEEEccCCCcc
Q 017748 122 LLNPLTKRHRVLPTFYRDLSRCVPSLEGFGFDVGSGDFKLVKILAFGKP------MNYTEVAVFSLRVNSWRRIQDFPYF 195 (366)
Q Consensus 122 V~NP~t~~~~~LP~~~~~~~~~~~~~~~lg~d~~~~~ykvv~~~~~~~~------~~~~~~~vyss~t~~W~~~~~~~~~ 195 (366)
..||.+++|..++++|... .. . ++-+..+ +|+.+...... .....+++|+..+++|+.+..++..
T Consensus 170 ~~dp~~~~W~~~~~~P~~~----~~-~--av~~~~g--~l~v~GG~~~~~~~~~~~~~~~~~~yd~~t~~w~~~~~~~~~ 240 (656)
T 1k3i_A 170 APQPGLGRWGPTIDLPIVP----AA-A--AIEPTSG--RVLMWSSYRNDAFGGSPGGITLTSSWDPSTGIVSDRTVTVTK 240 (656)
T ss_dssp CCCTTSCEEEEEEECSSCC----SE-E--EEETTTT--EEEEEEECCCTTTCSCCCSEEEEEEECTTTCCBCCCEEEECS
T ss_pred cCCCCCCeeeeeccCCCCc----ee-E--EEEecCC--EEEEEecccccccccCCCCeEEEEEEeCCCCcEEeCcccCCC
Confidence 5689999999888776521 11 1 2222112 44444322211 1234789999999999988766554
Q ss_pred eecCCcc-e-EECCcEEEEEeeCCCCCCCcEEEEEECCCceeeee-CCCCccCCCCceEEEEEE-CCeEEEEEee-cCCC
Q 017748 196 WVTGTCS-V-FVNGALHWTAALNQDADRNDIIIAFDLKSEEFYQV-PLPPIVGIEGYYILLEAL-GGCLCLLCKF-DDDD 270 (366)
Q Consensus 196 ~~~~~~~-v-~~~G~lYw~~~~~~~~~~~~~i~~fD~~~~~~~~i-~lP~~~~~~~~~~~l~~~-~g~L~l~~~~-~~~~ 270 (366)
......+ + ..+|.+|.+++... ..+..||+.+++|..+ ++|... .....+.+ +|+|+++++. +...
T Consensus 241 ~~~~~~~~~~~~~g~lyv~GG~~~-----~~v~~yd~~t~~W~~~~~~~~~R----~~~s~~~~~dg~iyv~GG~~~~~~ 311 (656)
T 1k3i_A 241 HDMFCPGISMDGNGQIVVTGGNDA-----KKTSLYDSSSDSWIPGPDMQVAR----GYQSSATMSDGRVFTIGGSWSGGV 311 (656)
T ss_dssp CCCSSCEEEECTTSCEEEECSSST-----TCEEEEEGGGTEEEECCCCSSCC----SSCEEEECTTSCEEEECCCCCSSS
T ss_pred CCCccccccCCCCCCEEEeCCCCC-----CceEEecCcCCceeECCCCCccc----cccceEEecCCeEEEEeCcccCCc
Confidence 4322222 3 36899999987543 2699999999999988 566544 34456777 9999999984 3211
Q ss_pred CCCcEEEEEeccCCCCCceEEEEE-----eccCCCc-----eeeEEEEecCCcEEEEEeeCCeEEEEeCCCCeEEEe
Q 017748 271 DDRPWDLWVMKEYGVNDSWTKLAT-----LLNVGGG-----NVKPLVYSRSEDKVLLHAVRGDLCWYDLERHRVRSI 337 (366)
Q Consensus 271 ~~~~l~iW~l~~~~~~~~W~~~~~-----i~~~~~~-----~~~~~~~~~~g~~i~~~~~~~~~~~yd~~t~~~~~v 337 (366)
....+ |.++- ...+|+.+.. ++..... ......+...++.++.......+..||+++++|...
T Consensus 312 ~~~~~--e~yd~--~t~~W~~~~~~~~~p~~~~~~~~~~~~~~~iyv~Gg~~g~~~~~~~~~~v~~yd~~~~~w~~~ 384 (656)
T 1k3i_A 312 FEKNG--EVYSP--SSKTWTSLPNAKVNPMLTADKQGLYRSDNHAWLFGWKKGSVFQAGPSTAMNWYYTSGSGDVKS 384 (656)
T ss_dssp CCCCE--EEEET--TTTEEEEETTSCSGGGCCCCTTGGGTTTCSCCEEECGGGCEEECCSSSEEEEEECSTTCEEEE
T ss_pred ccccc--eEeCC--CCCcceeCCCccccccccccccceeecCCceEEEECCCCcEEEecCccceeeeecCCcceeec
Confidence 12234 44443 2367998622 1111000 011122222122344333344689999999998654
|
| >3l2o_B F-box only protein 4; small G protein fold, UBL conjugation pathway, ubiquitin Pro ligase, protein binding-cell cycle complex; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.09 E-value=6.5e-07 Score=76.67 Aligned_cols=51 Identities=16% Similarity=0.264 Sum_probs=46.5
Q ss_pred CCCCCcHHHHHHHHccCCcccceeeeccchhhhhhcCChhHHHHHHhcccc
Q 017748 3 TSVQLPLDLIVDILIRLPVRSLARFRCVSRSFRSLIDGQDFVNRYVNHSIE 53 (366)
Q Consensus 3 ~~~~LP~dll~~IL~rLP~~~l~r~r~VcK~W~~li~s~~F~~~~~~~~~~ 53 (366)
.++.||+|++..||+.|++++|+++..|||+||.+..++...+.+..+...
T Consensus 4 ~l~~LP~ei~l~IlsfL~p~DL~~l~~vcr~Wr~la~D~~LWr~~l~rd~~ 54 (312)
T 3l2o_B 4 TLTRLPIDVQLYILSFLSPHDLCQLGSTNHYWNETVRDPILWRYFLLRDLP 54 (312)
T ss_dssp HHHHSCHHHHHHHHHTSCHHHHHHHHTTCHHHHHHHTCHHHHHHHHHSSGG
T ss_pred hhHhCCHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhccchHHHHHHhccCC
Confidence 356799999999999999999999999999999999999999888887644
|
| >2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A | Back alignment and structure |
|---|
Probab=97.66 E-value=1.2e-05 Score=71.97 Aligned_cols=42 Identities=19% Similarity=0.284 Sum_probs=38.5
Q ss_pred CCCCCCcHHHHHHHHccCCcccceeeeccchhhhhhcCChhH
Q 017748 2 ETSVQLPLDLIVDILIRLPVRSLARFRCVSRSFRSLIDGQDF 43 (366)
Q Consensus 2 ~~~~~LP~dll~~IL~rLP~~~l~r~r~VcK~W~~li~s~~F 43 (366)
..++.||+|++.+||.+|+.+++.+++.|||+|+.++.+|..
T Consensus 7 ~~~~~LP~eil~~If~~L~~~d~~~~~~vc~~W~~~~~~~~~ 48 (336)
T 2ast_B 7 VSWDSLPDELLLGIFSCLCLPELLKVSGVCKRWYRLASDESL 48 (336)
T ss_dssp CCSSSSCHHHHHHHHTTSCHHHHHHTTSSCHHHHHHHTCSTT
T ss_pred CChhhCCHHHHHHHHHhCCHHHHHHHHHHHHHHHHHhcCchh
Confidence 568899999999999999999999999999999999877653
|
| >2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B* | Back alignment and structure |
|---|
Probab=97.00 E-value=0.00014 Score=70.23 Aligned_cols=35 Identities=9% Similarity=0.259 Sum_probs=29.5
Q ss_pred CCCCCcHHHHHHHHccCC-cccceeeeccchhhhhh
Q 017748 3 TSVQLPLDLIVDILIRLP-VRSLARFRCVSRSFRSL 37 (366)
Q Consensus 3 ~~~~LP~dll~~IL~rLP-~~~l~r~r~VcK~W~~l 37 (366)
.++.||+|++.+||++|| .+++.+++.|||+|+.+
T Consensus 5 ~~~~LPdevL~~If~~L~~~~d~~~~s~vck~W~~~ 40 (594)
T 2p1m_B 5 IALSFPEEVLEHVFSFIQLDKDRNSVSLVCKSWYEI 40 (594)
T ss_dssp -----CHHHHHHHHHTCCCHHHHHHHHTSCHHHHHH
T ss_pred chhhCCHHHHHHHHhhcCCchhHHHHHHHHHHHHHh
Confidence 478899999999999999 99999999999999988
|
| >3ei3_B DNA damage-binding protein 2; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Danio rerio} PDB: 3ei1_B* 3ei2_B* 4a08_B* 4a09_B* 4a0a_B* 4a0b_B* 4a0k_D* 4a0l_B* | Back alignment and structure |
|---|
Probab=96.71 E-value=0.3 Score=43.49 Aligned_cols=194 Identities=12% Similarity=0.080 Sum_probs=102.9
Q ss_pred eEEeecCCccEEEEEeccccceeecCCcCCCCCCCCcceEEEeeecCCCCeEEEEEEEEcCCCCccEEEEEEecCCcEEE
Q 017748 109 LLALEDSRRNIMLLLNPLTKRHRVLPTFYRDLSRCVPSLEGFGFDVGSGDFKLVKILAFGKPMNYTEVAVFSLRVNSWRR 188 (366)
Q Consensus 109 ll~~~~~~~~~~~V~NP~t~~~~~LP~~~~~~~~~~~~~~~lg~d~~~~~ykvv~~~~~~~~~~~~~~~vyss~t~~W~~ 188 (366)
+++....+..+. |||..+++....-....+ ......+.+.|..+.+-+.+ . ....+.+++..+...+.
T Consensus 88 ~l~s~~~dg~i~-iwd~~~~~~~~~~~~~~h----~~~v~~~~~~~~~~~~l~s~-~------~d~~i~iwd~~~~~~~~ 155 (383)
T 3ei3_B 88 TVAVGSKGGDII-LWDYDVQNKTSFIQGMGP----GDAITGMKFNQFNTNQLFVS-S------IRGATTLRDFSGSVIQV 155 (383)
T ss_dssp EEEEEEBTSCEE-EEETTSTTCEEEECCCST----TCBEEEEEEETTEEEEEEEE-E------TTTEEEEEETTSCEEEE
T ss_pred EEEEEcCCCeEE-EEeCCCcccceeeecCCc----CCceeEEEeCCCCCCEEEEE-e------CCCEEEEEECCCCceEE
Confidence 444343455677 888888776544322111 22445566665322222222 1 14568888888766665
Q ss_pred ccCCCccee-cCCcceEECCcEEEEEeeCCCCCCCcEEEEEECCCceeeeeCCCCccCCCCceEEEEEE-CCe-EEEEEe
Q 017748 189 IQDFPYFWV-TGTCSVFVNGALHWTAALNQDADRNDIIIAFDLKSEEFYQVPLPPIVGIEGYYILLEAL-GGC-LCLLCK 265 (366)
Q Consensus 189 ~~~~~~~~~-~~~~~v~~~G~lYw~~~~~~~~~~~~~i~~fD~~~~~~~~i~lP~~~~~~~~~~~l~~~-~g~-L~l~~~ 265 (366)
+........ ...-...-+|.....+..+ ..|..+|+..+....+..... ....+... +|+ +.+.+.
T Consensus 156 ~~~~~~~~~~v~~~~~~~~~~~l~~~~~d------~~i~i~d~~~~~~~~~~~h~~-----~v~~~~~~~~~~~~l~s~~ 224 (383)
T 3ei3_B 156 FAKTDSWDYWYCCVDVSVSRQMLATGDST------GRLLLLGLDGHEIFKEKLHKA-----KVTHAEFNPRCDWLMATSS 224 (383)
T ss_dssp EECCCCSSCCEEEEEEETTTTEEEEEETT------SEEEEEETTSCEEEEEECSSS-----CEEEEEECSSCTTEEEEEE
T ss_pred EeccCCCCCCeEEEEECCCCCEEEEECCC------CCEEEEECCCCEEEEeccCCC-----cEEEEEECCCCCCEEEEEe
Confidence 532221000 0000111245544444433 379999997665555443222 22233333 355 666555
Q ss_pred ecCCCCCCcEEEEEeccCCCCCceEEEEEeccCCCceeeEEEEec-CCcEEEEEeeCCeEEEEeCCCCeE
Q 017748 266 FDDDDDDRPWDLWVMKEYGVNDSWTKLATLLNVGGGNVKPLVYSR-SEDKVLLHAVRGDLCWYDLERHRV 334 (366)
Q Consensus 266 ~~~~~~~~~l~iW~l~~~~~~~~W~~~~~i~~~~~~~~~~~~~~~-~g~~i~~~~~~~~~~~yd~~t~~~ 334 (366)
.+. .+.+|-+....... ..+..+..... ..-+.+.. +|..++....++.+..||+++++.
T Consensus 225 ~d~-----~i~iwd~~~~~~~~--~~~~~~~~~~~--v~~~~~s~~~~~~l~~~~~d~~i~iwd~~~~~~ 285 (383)
T 3ei3_B 225 VDA-----TVKLWDLRNIKDKN--SYIAEMPHEKP--VNAAYFNPTDSTKLLTTDQRNEIRVYSSYDWSK 285 (383)
T ss_dssp TTS-----EEEEEEGGGCCSTT--CEEEEEECSSC--EEEEEECTTTSCEEEEEESSSEEEEEETTBTTS
T ss_pred CCC-----EEEEEeCCCCCccc--ceEEEecCCCc--eEEEEEcCCCCCEEEEEcCCCcEEEEECCCCcc
Confidence 554 89999998743222 22333333222 55566777 776666667778899999988664
|
| >3dsm_A Uncharacterized protein bacuni_02894; seven_blated beta propeller, structural genomics, PSI-2, Pro structure initiative; 1.90A {Bacteroides uniformis} | Back alignment and structure |
|---|
Probab=96.70 E-value=0.28 Score=43.02 Aligned_cols=200 Identities=13% Similarity=0.045 Sum_probs=104.2
Q ss_pred ceeEEeecC-----CccEEEEEeccccceee-cCCcCCCCCCCCcceEEEeeecCCCCeEEEEEEEEcCCCCccEEEEEE
Q 017748 107 NGLLALEDS-----RRNIMLLLNPLTKRHRV-LPTFYRDLSRCVPSLEGFGFDVGSGDFKLVKILAFGKPMNYTEVAVFS 180 (366)
Q Consensus 107 ~Gll~~~~~-----~~~~~~V~NP~t~~~~~-LP~~~~~~~~~~~~~~~lg~d~~~~~ykvv~~~~~~~~~~~~~~~vys 180 (366)
+|++.+... ...+. ++||.|++... ++........ ......+.++. ....+... ....+.+++
T Consensus 2 ~g~~v~neg~~g~~~~~l~-~~d~~t~~~~~~i~~~~n~~~l-g~~~~~i~~~~---~~lyv~~~------~~~~v~viD 70 (328)
T 3dsm_A 2 SGLFITNEGNFQYSNATLS-YYDPATCEVENEVFYRANGFKL-GDVAQSMVIRD---GIGWIVVN------NSHVIFAID 70 (328)
T ss_dssp CEEEEEECCCTTSCCBEEE-EEETTTTEEECSHHHHHHSSCC-BSCEEEEEEET---TEEEEEEG------GGTEEEEEE
T ss_pred CeEEEEecCCCCCCCceEE-EEECCCCEEhhhhHhhhcCccc-CccceEEEEEC---CEEEEEEc------CCCEEEEEE
Confidence 466665543 56788 99999988753 2110000000 11223344442 23222221 145788999
Q ss_pred ecCCcE-EEccCCCcceecCCcceE--ECCcEEEEEeeCCCCCCCcEEEEEECCCceee-eeCCCCccCCCCceEEEEEE
Q 017748 181 LRVNSW-RRIQDFPYFWVTGTCSVF--VNGALHWTAALNQDADRNDIIIAFDLKSEEFY-QVPLPPIVGIEGYYILLEAL 256 (366)
Q Consensus 181 s~t~~W-~~~~~~~~~~~~~~~~v~--~~G~lYw~~~~~~~~~~~~~i~~fD~~~~~~~-~i~lP~~~~~~~~~~~l~~~ 256 (366)
..++.- ++++.... ..++. -+|.+|...... ..|..+|+++.+.. .++++...........++..
T Consensus 71 ~~t~~~~~~i~~~~~-----p~~i~~~~~g~lyv~~~~~------~~v~~iD~~t~~~~~~i~~g~~~~~~~~p~~i~~~ 139 (328)
T 3dsm_A 71 INTFKEVGRITGFTS-----PRYIHFLSDEKAYVTQIWD------YRIFIINPKTYEITGYIECPDMDMESGSTEQMVQY 139 (328)
T ss_dssp TTTCCEEEEEECCSS-----EEEEEEEETTEEEEEEBSC------SEEEEEETTTTEEEEEEECTTCCTTTCBCCCEEEE
T ss_pred CcccEEEEEcCCCCC-----CcEEEEeCCCeEEEEECCC------CeEEEEECCCCeEEEEEEcCCccccCCCcceEEEE
Confidence 888765 33322111 11232 478887766332 38999999998764 45655511000011123336
Q ss_pred CCeEEEEEeecCCCCCCcEEEEEeccCCCCCceEEEEEeccCCCceeeEEEEecCCcEEEEEeeC-----------CeEE
Q 017748 257 GGCLCLLCKFDDDDDDRPWDLWVMKEYGVNDSWTKLATLLNVGGGNVKPLVYSRSEDKVLLHAVR-----------GDLC 325 (366)
Q Consensus 257 ~g~L~l~~~~~~~~~~~~l~iW~l~~~~~~~~W~~~~~i~~~~~~~~~~~~~~~~g~~i~~~~~~-----------~~~~ 325 (366)
+++|+++...... .+.++-++. .+. +.+++.... ..-+.+..+| ++++...+ ..++
T Consensus 140 ~~~lyv~~~~~~~----~v~viD~~t----~~~--~~~i~~g~~--p~~i~~~~dG-~l~v~~~~~~~~~~~~~~~~~v~ 206 (328)
T 3dsm_A 140 GKYVYVNCWSYQN----RILKIDTET----DKV--VDELTIGIQ--PTSLVMDKYN-KMWTITDGGYEGSPYGYEAPSLY 206 (328)
T ss_dssp TTEEEEEECTTCC----EEEEEETTT----TEE--EEEEECSSC--BCCCEECTTS-EEEEEBCCBCTTCSSCBCCCEEE
T ss_pred CCEEEEEcCCCCC----EEEEEECCC----CeE--EEEEEcCCC--ccceEEcCCC-CEEEEECCCccCCccccCCceEE
Confidence 8899887541111 455443332 222 233433221 2234455666 77776543 4699
Q ss_pred EEeCCCCeEEEeeeec
Q 017748 326 WYDLERHRVRSIVEID 341 (366)
Q Consensus 326 ~yd~~t~~~~~v~~~~ 341 (366)
.+|+++++..+...+.
T Consensus 207 ~id~~t~~v~~~~~~~ 222 (328)
T 3dsm_A 207 RIDAETFTVEKQFKFK 222 (328)
T ss_dssp EEETTTTEEEEEEECC
T ss_pred EEECCCCeEEEEEecC
Confidence 9999999987543553
|
| >3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B* | Back alignment and structure |
|---|
Probab=96.53 E-value=0.00053 Score=66.11 Aligned_cols=34 Identities=15% Similarity=0.171 Sum_probs=31.8
Q ss_pred CCCCcHHHHHHHHccC-Ccccceeeeccchhhhhh
Q 017748 4 SVQLPLDLIVDILIRL-PVRSLARFRCVSRSFRSL 37 (366)
Q Consensus 4 ~~~LP~dll~~IL~rL-P~~~l~r~r~VcK~W~~l 37 (366)
.+.||||++.+||.+| |.+++.+++.|||+|+.+
T Consensus 13 ~~~LPdeil~~I~~~L~~~~d~~~~s~vck~W~~~ 47 (592)
T 3ogk_B 13 CVATVDDVIEQVMTYITDPKDRDSASLVCRRWFKI 47 (592)
T ss_dssp CCCCGGGTHHHHHTTCCCHHHHHHHTTSCHHHHHH
T ss_pred cCCCCHHHHHHHHHhcCCHHHHHHHHHHhHHHHHh
Confidence 3479999999999999 899999999999999987
|
| >3mbr_X Glutamine cyclotransferase; beta-propeller; 1.44A {Xanthomonas campestris} | Back alignment and structure |
|---|
Probab=96.24 E-value=0.18 Score=42.34 Aligned_cols=119 Identities=13% Similarity=0.132 Sum_probs=77.2
Q ss_pred CcceE-ECCcEEEEEeeCCCCCCCcEEEEEECCCcee-eeeCCCCccCCCCceEEEEEECCeEEEEEeecCCCCCCcEEE
Q 017748 200 TCSVF-VNGALHWTAALNQDADRNDIIIAFDLKSEEF-YQVPLPPIVGIEGYYILLEALGGCLCLLCKFDDDDDDRPWDL 277 (366)
Q Consensus 200 ~~~v~-~~G~lYw~~~~~~~~~~~~~i~~fD~~~~~~-~~i~lP~~~~~~~~~~~l~~~~g~L~l~~~~~~~~~~~~l~i 277 (366)
..++. .+|.+|.-++.... ..|..+|+++++. ..+++|... +.--++..+++||.+.-.+. .+
T Consensus 23 tqGL~~~~~~LyestG~~g~----S~v~~vD~~tgkv~~~~~l~~~~----fgeGi~~~~~~ly~ltw~~~-------~v 87 (243)
T 3mbr_X 23 TEGLFYLRGHLYESTGETGR----SSVRKVDLETGRILQRAEVPPPY----FGAGIVAWRDRLIQLTWRNH-------EG 87 (243)
T ss_dssp EEEEEEETTEEEEEECCTTS----CEEEEEETTTCCEEEEEECCTTC----CEEEEEEETTEEEEEESSSS-------EE
T ss_pred cccEEEECCEEEEECCCCCC----ceEEEEECCCCCEEEEEeCCCCc----ceeEEEEeCCEEEEEEeeCC-------EE
Confidence 33543 45666655444211 3799999999877 556888765 44456777999999865433 45
Q ss_pred EEeccCCCCCceEEEEEeccCCCceeeEEEEecCCcEEEEEeeCCeEEEEeCCCCeEEEeeeec
Q 017748 278 WVMKEYGVNDSWTKLATLLNVGGGNVKPLVYSRSEDKVLLHAVRGDLCWYDLERHRVRSIVEID 341 (366)
Q Consensus 278 W~l~~~~~~~~W~~~~~i~~~~~~~~~~~~~~~~g~~i~~~~~~~~~~~yd~~t~~~~~v~~~~ 341 (366)
|+++. .+-..+.+++.... ..++..+++.+++...+.++..+|++|.+...-.++.
T Consensus 88 ~v~D~----~tl~~~~ti~~~~~----Gwglt~dg~~L~vSdgs~~l~~iDp~t~~~~~~I~V~ 143 (243)
T 3mbr_X 88 FVYDL----ATLTPRARFRYPGE----GWALTSDDSHLYMSDGTAVIRKLDPDTLQQVGSIKVT 143 (243)
T ss_dssp EEEET----TTTEEEEEEECSSC----CCEEEECSSCEEEECSSSEEEEECTTTCCEEEEEECE
T ss_pred EEEEC----CcCcEEEEEeCCCC----ceEEeeCCCEEEEECCCCeEEEEeCCCCeEEEEEEEc
Confidence 66665 23566777776432 3455566767888776678999999998764332553
|
| >3q7m_A Lipoprotein YFGL, BAMB; beta-propeller, BAM complex, outer membrane protein folding, negative, BAMA, protein binding; 1.65A {Escherichia coli} PDB: 3q7n_A 3q7o_A 3p1l_A 3prw_A 2yh3_A 3q54_A | Back alignment and structure |
|---|
Probab=95.96 E-value=0.82 Score=40.64 Aligned_cols=195 Identities=7% Similarity=-0.004 Sum_probs=97.9
Q ss_pred EEeeeceeEEeecCCccEEEEEeccccceeecCCcCCCCCCCCcceEEEeeecCCCCeEEEEEEEEcCCCCccEEEEEEe
Q 017748 102 IIGSCNGLLALEDSRRNIMLLLNPLTKRHRVLPTFYRDLSRCVPSLEGFGFDVGSGDFKLVKILAFGKPMNYTEVAVFSL 181 (366)
Q Consensus 102 ~~~s~~Gll~~~~~~~~~~~V~NP~t~~~~~LP~~~~~~~~~~~~~~~lg~d~~~~~ykvv~~~~~~~~~~~~~~~vyss 181 (366)
.....+|.+.+......++ .+|+.|++.++--....... ... .+. +. +|+... ....+..|+.
T Consensus 98 ~~~~~~~~v~v~~~~g~l~-a~d~~tG~~~W~~~~~~~~~---~~p-~~~-----~~-~v~v~~------~~g~l~~~d~ 160 (376)
T 3q7m_A 98 GVTVSGGHVYIGSEKAQVY-ALNTSDGTVAWQTKVAGEAL---SRP-VVS-----DG-LVLIHT------SNGQLQALNE 160 (376)
T ss_dssp EEEEETTEEEEEETTSEEE-EEETTTCCEEEEEECSSCCC---SCC-EEE-----TT-EEEEEC------TTSEEEEEET
T ss_pred CceEeCCEEEEEcCCCEEE-EEECCCCCEEEEEeCCCceE---cCC-EEE-----CC-EEEEEc------CCCeEEEEEC
Confidence 3445678887776667788 99999988543211111110 011 111 12 233221 1346778887
Q ss_pred cCC--cEEEccCCCcc-eecCCcceEECCcEEEEEeeCCCCCCCcEEEEEECCCcee--eee-CCCCccCC----CCceE
Q 017748 182 RVN--SWRRIQDFPYF-WVTGTCSVFVNGALHWTAALNQDADRNDIIIAFDLKSEEF--YQV-PLPPIVGI----EGYYI 251 (366)
Q Consensus 182 ~t~--~W~~~~~~~~~-~~~~~~~v~~~G~lYw~~~~~~~~~~~~~i~~fD~~~~~~--~~i-~lP~~~~~----~~~~~ 251 (366)
.++ .|+.-...+.. ......++..+|.+|.-... ..+.++|.++.+. +.- ..|..... .....
T Consensus 161 ~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~v~~g~~~-------g~l~~~d~~tG~~~w~~~~~~~~~~~~~~~~~~~~~ 233 (376)
T 3q7m_A 161 ADGAVKWTVNLDMPSLSLRGESAPTTAFGAAVVGGDN-------GRVSAVLMEQGQMIWQQRISQATGSTEIDRLSDVDT 233 (376)
T ss_dssp TTCCEEEEEECCC-----CCCCCCEEETTEEEECCTT-------TEEEEEETTTCCEEEEEECCC-----------CCCC
T ss_pred CCCcEEEEEeCCCCceeecCCCCcEEECCEEEEEcCC-------CEEEEEECCCCcEEEEEecccCCCCcccccccccCC
Confidence 665 48764332211 11223456677877664322 3799999987644 322 22221100 00011
Q ss_pred EEEEECCeEEEEEeecCCCCCCcEEEEEeccCCCCCceEEEEEeccCCCceeeEEEEecCCcEEEEEeeCCeEEEEeCCC
Q 017748 252 LLEALGGCLCLLCKFDDDDDDRPWDLWVMKEYGVNDSWTKLATLLNVGGGNVKPLVYSRSEDKVLLHAVRGDLCWYDLER 331 (366)
Q Consensus 252 ~l~~~~g~L~l~~~~~~~~~~~~l~iW~l~~~~~~~~W~~~~~i~~~~~~~~~~~~~~~~g~~i~~~~~~~~~~~yd~~t 331 (366)
.....+|.+++... .. .+..+-.+. .+..|... .... ..+ .+ .++.|++...++.++++|+++
T Consensus 234 ~p~~~~~~v~~~~~-~g-----~l~~~d~~t--G~~~w~~~----~~~~--~~~-~~--~~~~l~~~~~~g~l~~~d~~t 296 (376)
T 3q7m_A 234 TPVVVNGVVFALAY-NG-----NLTALDLRS--GQIMWKRE----LGSV--NDF-IV--DGNRIYLVDQNDRVMALTIDG 296 (376)
T ss_dssp CCEEETTEEEEECT-TS-----CEEEEETTT--CCEEEEEC----CCCE--EEE-EE--ETTEEEEEETTCCEEEEETTT
T ss_pred CcEEECCEEEEEec-Cc-----EEEEEECCC--CcEEeecc----CCCC--CCc-eE--ECCEEEEEcCCCeEEEEECCC
Confidence 22344677776542 21 333333222 23446542 1111 222 22 345888888777899999999
Q ss_pred CeEEEe
Q 017748 332 HRVRSI 337 (366)
Q Consensus 332 ~~~~~v 337 (366)
++..+-
T Consensus 297 G~~~w~ 302 (376)
T 3q7m_A 297 GVTLWT 302 (376)
T ss_dssp CCEEEE
T ss_pred CcEEEe
Confidence 997665
|
| >3jro_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum, transport, membrane, mRNA transport; 4.00A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=95.50 E-value=0.87 Score=45.05 Aligned_cols=189 Identities=10% Similarity=0.056 Sum_probs=95.8
Q ss_pred CccEEEEEeccccceeecCCcCCCCCCCCcceEEEeeecCCCCeEEEEEEEEcCCCCccEEEEEEecCCcEEEccCCCcc
Q 017748 116 RRNIMLLLNPLTKRHRVLPTFYRDLSRCVPSLEGFGFDVGSGDFKLVKILAFGKPMNYTEVAVFSLRVNSWRRIQDFPYF 195 (366)
Q Consensus 116 ~~~~~~V~NP~t~~~~~LP~~~~~~~~~~~~~~~lg~d~~~~~ykvv~~~~~~~~~~~~~~~vyss~t~~W~~~~~~~~~ 195 (366)
+..+. |||..++....+.....+ ......+.+.+..+.-.++.... ...+.+++..++.|.........
T Consensus 30 dg~I~-vwd~~~~~~~~~~~l~~h----~~~V~~l~~s~~~~~~~l~s~s~------Dg~I~vwd~~~~~~~~~~~~~~h 98 (753)
T 3jro_A 30 DKTIK-IFEVEGETHKLIDTLTGH----EGPVWRVDWAHPKFGTILASCSY------DGKVLIWKEENGRWSQIAVHAVH 98 (753)
T ss_dssp TTEEE-EEEEETTEEEEEEEECCC----SSCEEEEEECCTTSCSEEEEEET------TSCEEEEEEETTEEEEEEEECCC
T ss_pred CCcEE-EEecCCCCCccceeccCC----cCceEEEEecCCCCCCEEEEEeC------CCeEEEEECCCCcccccccccCC
Confidence 34455 777653333322222211 12344566655432223333321 45689999999887665432211
Q ss_pred eecCCcceEEC----CcEEEEEeeCCCCCCCcEEEEEECCCceee-eeCCCCccCCCCceEEEEEE--------------
Q 017748 196 WVTGTCSVFVN----GALHWTAALNQDADRNDIIIAFDLKSEEFY-QVPLPPIVGIEGYYILLEAL-------------- 256 (366)
Q Consensus 196 ~~~~~~~v~~~----G~lYw~~~~~~~~~~~~~i~~fD~~~~~~~-~i~lP~~~~~~~~~~~l~~~-------------- 256 (366)
.. .-.++.+. |.....+..+ ..|..+|+.+..-. ...+.... .....+...
T Consensus 99 ~~-~V~~v~~sp~~~~~~l~sgs~d------g~I~vwdl~~~~~~~~~~~~~~~---~~v~~l~~~p~~~~~~~~~~~~~ 168 (753)
T 3jro_A 99 SA-SVNSVQWAPHEYGPLLLVASSD------GKVSVVEFKENGTTSPIIIDAHA---IGVNSASWAPATIEEDGEHNGTK 168 (753)
T ss_dssp SS-CEEEEEECCGGGCSEEEEEETT------SEEEEEECCSSSCCCCEEEECCS---SCEEEEEECCCC---------CG
T ss_pred CC-CeEEEEECCCCCCCEEEEEeCC------CcEEEEEeecCCCcceeEeecCC---CceEEEEecCcccccccccccCC
Confidence 11 01122222 4454444443 37999998876221 11111111 111222222
Q ss_pred CCeEEEEEeecCCCCCCcEEEEEeccCCCCCceEEEEEeccCCCceeeEEEEecC---CcEEEEEeeCCeEEEEeCCCCe
Q 017748 257 GGCLCLLCKFDDDDDDRPWDLWVMKEYGVNDSWTKLATLLNVGGGNVKPLVYSRS---EDKVLLHAVRGDLCWYDLERHR 333 (366)
Q Consensus 257 ~g~L~l~~~~~~~~~~~~l~iW~l~~~~~~~~W~~~~~i~~~~~~~~~~~~~~~~---g~~i~~~~~~~~~~~yd~~t~~ 333 (366)
+|.+.+++..++ .+.+|-+... ...+.....+.... +...-+++.++ +..++....++.+..||+.+++
T Consensus 169 d~~~l~sgs~dg-----~I~iwd~~~~--~~~~~~~~~~~~h~-~~V~~l~~sp~~~~~~~l~s~s~Dg~I~iwd~~~~~ 240 (753)
T 3jro_A 169 ESRKFVTGGADN-----LVKIWKYNSD--AQTYVLESTLEGHS-DWVRDVAWSPTVLLRSYLASVSQDRTCIIWTQDNEQ 240 (753)
T ss_dssp GGCCEEEEETTS-----CEEEEEEETT--TTEEEEEEEECCCS-SCEEEEEECCCCSSSEEEEEEESSSCEEEEEESSSS
T ss_pred CCCEEEEEECCC-----eEEEEeccCC--cccceeeeeecCCC-CcEEEEEeccCCCCCCEEEEEecCCEEEEecCCCCC
Confidence 356666666555 8999999873 24566666654321 11445566666 6445555667779999999863
|
| >2iwa_A Glutamine cyclotransferase; pyroglutamate, acyltransferase, glutaminyl CYCL N-terminal cyclisation; HET: NAG; 1.6A {Carica papaya} PDB: 2faw_A* | Back alignment and structure |
|---|
Probab=95.50 E-value=0.35 Score=41.19 Aligned_cols=113 Identities=7% Similarity=-0.014 Sum_probs=72.0
Q ss_pred CcEEEEEeeCCCCCCCcEEEEEECCCcee-eeeCCCCccCCCCceEEEEEECCeEEEEEeecCCCCCCcEEEEEeccCCC
Q 017748 207 GALHWTAALNQDADRNDIIIAFDLKSEEF-YQVPLPPIVGIEGYYILLEALGGCLCLLCKFDDDDDDRPWDLWVMKEYGV 285 (366)
Q Consensus 207 G~lYw~~~~~~~~~~~~~i~~fD~~~~~~-~~i~lP~~~~~~~~~~~l~~~~g~L~l~~~~~~~~~~~~l~iW~l~~~~~ 285 (366)
|.+|.-++.... ..|..+|+++++. ..+++|... +..-++..+++||++.-.++ . +++++.
T Consensus 32 g~Lyvstg~~~~----s~v~~iD~~tg~v~~~i~l~~~~----fgeGi~~~g~~lyv~t~~~~-----~--v~viD~--- 93 (266)
T 2iwa_A 32 DTLFESTGLYGR----SSVRQVALQTGKVENIHKMDDSY----FGEGLTLLNEKLYQVVWLKN-----I--GFIYDR--- 93 (266)
T ss_dssp TEEEEEECSTTT----CEEEEEETTTCCEEEEEECCTTC----CEEEEEEETTEEEEEETTCS-----E--EEEEET---
T ss_pred CeEEEECCCCCC----CEEEEEECCCCCEEEEEecCCCc----ceEEEEEeCCEEEEEEecCC-----E--EEEEEC---
Confidence 677765543211 3899999998776 445776644 33345666889998876433 3 556664
Q ss_pred CCceEEEEEeccCCCceeeEEEEecCCcEEEEEeeCCeEEEEeCCCCeEEEeeeec
Q 017748 286 NDSWTKLATLLNVGGGNVKPLVYSRSEDKVLLHAVRGDLCWYDLERHRVRSIVEID 341 (366)
Q Consensus 286 ~~~W~~~~~i~~~~~~~~~~~~~~~~g~~i~~~~~~~~~~~yd~~t~~~~~v~~~~ 341 (366)
.+-..+.+++.. . ....++..+|+.+++...++.+..+|++|.+...-..+.
T Consensus 94 -~t~~v~~~i~~g-~--~~g~glt~Dg~~l~vs~gs~~l~viD~~t~~v~~~I~Vg 145 (266)
T 2iwa_A 94 -RTLSNIKNFTHQ-M--KDGWGLATDGKILYGSDGTSILYEIDPHTFKLIKKHNVK 145 (266)
T ss_dssp -TTTEEEEEEECC-S--SSCCEEEECSSSEEEECSSSEEEEECTTTCCEEEEEECE
T ss_pred -CCCcEEEEEECC-C--CCeEEEEECCCEEEEECCCCeEEEEECCCCcEEEEEEEC
Confidence 235666777654 1 123456667778888766667999999997754332553
|
| >1p22_A F-BOX/WD-repeat protein 1A; ubiquitination, degradation, signaling protein; HET: SEP; 2.95A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 | Back alignment and structure |
|---|
Probab=95.42 E-value=1.3 Score=40.19 Aligned_cols=191 Identities=12% Similarity=0.023 Sum_probs=99.3
Q ss_pred ceEEEeeeceeEEeecCCccEEEEEeccccceeecCCcCCCCCCCCcceEEEeeecCCCCeEEEEEEEEcCCCCccEEEE
Q 017748 99 FGFIIGSCNGLLALEDSRRNIMLLLNPLTKRHRVLPTFYRDLSRCVPSLEGFGFDVGSGDFKLVKILAFGKPMNYTEVAV 178 (366)
Q Consensus 99 ~~~~~~s~~Gll~~~~~~~~~~~V~NP~t~~~~~LP~~~~~~~~~~~~~~~lg~d~~~~~ykvv~~~~~~~~~~~~~~~v 178 (366)
.+..++..+.+++....+..+. |||..+++...--.. + ......+.+++ . .++.... ...+.+
T Consensus 175 ~v~~l~~~~~~l~sg~~dg~i~-vwd~~~~~~~~~~~~--h----~~~v~~l~~~~---~-~l~s~s~------dg~i~v 237 (435)
T 1p22_A 175 SVLCLQYDERVIITGSSDSTVR-VWDVNTGEMLNTLIH--H----CEAVLHLRFNN---G-MMVTCSK------DRSIAV 237 (435)
T ss_dssp CEEEEECCSSEEEEEETTSCEE-EEESSSCCEEEEECC--C----CSCEEEEECCT---T-EEEEEET------TSCEEE
T ss_pred cEEEEEECCCEEEEEcCCCeEE-EEECCCCcEEEEEcC--C----CCcEEEEEEcC---C-EEEEeeC------CCcEEE
Confidence 3444444455555555667788 999988875432111 1 12344455542 2 2222221 446788
Q ss_pred EEecCCcEEEc-cCCCcceecCCcceEECCcEEEEEeeCCCCCCCcEEEEEECCCceeee-eCCCCccCCCCceEEEEEE
Q 017748 179 FSLRVNSWRRI-QDFPYFWVTGTCSVFVNGALHWTAALNQDADRNDIIIAFDLKSEEFYQ-VPLPPIVGIEGYYILLEAL 256 (366)
Q Consensus 179 yss~t~~W~~~-~~~~~~~~~~~~~v~~~G~lYw~~~~~~~~~~~~~i~~fD~~~~~~~~-i~lP~~~~~~~~~~~l~~~ 256 (366)
|+..++.-... .... .....-.++..+|.....+..+ ..|..+|+.+.+... +..... .......
T Consensus 238 wd~~~~~~~~~~~~~~-~~~~~v~~~~~~~~~l~s~~~d------g~i~vwd~~~~~~~~~~~~~~~------~v~~~~~ 304 (435)
T 1p22_A 238 WDMASPTDITLRRVLV-GHRAAVNVVDFDDKYIVSASGD------RTIKVWNTSTCEFVRTLNGHKR------GIACLQY 304 (435)
T ss_dssp EECSSSSCCEEEEEEC-CCSSCEEEEEEETTEEEEEETT------SEEEEEETTTCCEEEEEECCSS------CEEEEEE
T ss_pred EeCCCCCCceeeeEec-CCCCcEEEEEeCCCEEEEEeCC------CeEEEEECCcCcEEEEEcCCCC------cEEEEEe
Confidence 88876432110 0000 0001112344577666555544 379999998865432 222211 1222233
Q ss_pred CCeEEEEEeecCCCCCCcEEEEEeccCCCCCceEEEEEeccCCCceeeEEEEecCCcEEEEEeeCCeEEEEeCCCCe
Q 017748 257 GGCLCLLCKFDDDDDDRPWDLWVMKEYGVNDSWTKLATLLNVGGGNVKPLVYSRSEDKVLLHAVRGDLCWYDLERHR 333 (366)
Q Consensus 257 ~g~L~l~~~~~~~~~~~~l~iW~l~~~~~~~~W~~~~~i~~~~~~~~~~~~~~~~g~~i~~~~~~~~~~~yd~~t~~ 333 (366)
+|.+.+++..++ .+.+|-+... ..+..+.... ..+.++..+++.++....++.+..||+++++
T Consensus 305 ~~~~l~~g~~dg-----~i~iwd~~~~------~~~~~~~~h~---~~v~~~~~~~~~l~sg~~dg~i~vwd~~~~~ 367 (435)
T 1p22_A 305 RDRLVVSGSSDN-----TIRLWDIECG------ACLRVLEGHE---ELVRCIRFDNKRIVSGAYDGKIKVWDLVAAL 367 (435)
T ss_dssp ETTEEEEEETTS-----CEEEEETTTC------CEEEEECCCS---SCEEEEECCSSEEEEEETTSCEEEEEHHHHT
T ss_pred CCCEEEEEeCCC-----eEEEEECCCC------CEEEEEeCCc---CcEEEEEecCCEEEEEeCCCcEEEEECCCCC
Confidence 566666666555 8999988752 2233443211 2233333466566667777789999987654
|
| >3jrp_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum; 2.60A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=95.41 E-value=1.3 Score=38.90 Aligned_cols=204 Identities=11% Similarity=0.085 Sum_probs=101.1
Q ss_pred eeEEeecCCccEEEEEeccccceeecCCcCCCCCCCCcceEEEeeecCC-CCeEEEEEEEEcCCCCccEEEEEEecCCcE
Q 017748 108 GLLALEDSRRNIMLLLNPLTKRHRVLPTFYRDLSRCVPSLEGFGFDVGS-GDFKLVKILAFGKPMNYTEVAVFSLRVNSW 186 (366)
Q Consensus 108 Gll~~~~~~~~~~~V~NP~t~~~~~LP~~~~~~~~~~~~~~~lg~d~~~-~~ykvv~~~~~~~~~~~~~~~vyss~t~~W 186 (366)
.+++....+..+. |||..++++..+-..... ......+.+.+.. +.+-+++ .. ...+.+|+..++.-
T Consensus 70 ~~l~s~~~dg~v~-iwd~~~~~~~~~~~~~~~----~~~v~~~~~~~~~~~~~l~~~-~~------d~~i~v~d~~~~~~ 137 (379)
T 3jrp_A 70 TILASCSYDGKVL-IWKEENGRWSQIAVHAVH----SASVNSVQWAPHEYGPLLLVA-SS------DGKVSVVEFKENGT 137 (379)
T ss_dssp SEEEEEETTSCEE-EEEEETTEEEEEEEECCC----SSCEEEEEECCGGGCSEEEEE-ET------TSEEEEEECCTTSC
T ss_pred CEEEEeccCCEEE-EEEcCCCceeEeeeecCC----CcceEEEEeCCCCCCCEEEEe-cC------CCcEEEEecCCCCc
Confidence 3444444556678 999888864443332221 1234556666653 3333332 21 45678888876521
Q ss_pred -E--EccCCCccee---cCCcce--------EECCcEEEEEeeCCCCCCCcEEEEEECCCce--eeee-CCCCccCCCCc
Q 017748 187 -R--RIQDFPYFWV---TGTCSV--------FVNGALHWTAALNQDADRNDIIIAFDLKSEE--FYQV-PLPPIVGIEGY 249 (366)
Q Consensus 187 -~--~~~~~~~~~~---~~~~~v--------~~~G~lYw~~~~~~~~~~~~~i~~fD~~~~~--~~~i-~lP~~~~~~~~ 249 (366)
. .+........ ...... .-+|.....+..+ ..|..+|+.+.. +..+ .+.... ..
T Consensus 138 ~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d------g~i~i~d~~~~~~~~~~~~~~~~h~---~~ 208 (379)
T 3jrp_A 138 TSPIIIDAHAIGVNSASWAPATIEEDGEHNGTKESRKFVTGGAD------NLVKIWKYNSDAQTYVLESTLEGHS---DW 208 (379)
T ss_dssp CCEEEEECCTTCEEEEEECCCC----------CTTCEEEEEETT------SCEEEEEEETTTTEEEEEEEECCCS---SC
T ss_pred eeeEEecCCCCceEEEEEcCccccccccccCCCCCCEEEEEeCC------CeEEEEEecCCCcceeeEEEEeccc---Cc
Confidence 1 1111111100 000000 0035555444433 258888886543 3332 222221 12
Q ss_pred eEEEEEE-C---CeEEEEEeecCCCCCCcEEEEEeccCCCCCceEEEEEeccCCC-ceeeEEEEecCCcEEEEEeeCCeE
Q 017748 250 YILLEAL-G---GCLCLLCKFDDDDDDRPWDLWVMKEYGVNDSWTKLATLLNVGG-GNVKPLVYSRSEDKVLLHAVRGDL 324 (366)
Q Consensus 250 ~~~l~~~-~---g~L~l~~~~~~~~~~~~l~iW~l~~~~~~~~W~~~~~i~~~~~-~~~~~~~~~~~g~~i~~~~~~~~~ 324 (366)
...+... + |++.+....+. .+.+|.++... ..+... ....... ....-+++..+|..|+....++.+
T Consensus 209 v~~~~~sp~~~~~~~l~s~~~dg-----~i~iwd~~~~~--~~~~~~-~~~~~~~~~~v~~~~~s~~g~~l~~~~~dg~i 280 (379)
T 3jrp_A 209 VRDVAWSPTVLLRSYLASVSQDR-----TCIIWTQDNEQ--GPWKKT-LLKEEKFPDVLWRASWSLSGNVLALSGGDNKV 280 (379)
T ss_dssp EEEEEECCCCSSSEEEEEEETTS-----CEEEEEESSTT--SCCEEE-ESSSSCCSSCEEEEEECSSSCCEEEEESSSSE
T ss_pred EeEEEECCCCCCCCeEEEEeCCC-----EEEEEeCCCCC--ccceee-eeccccCCCcEEEEEEcCCCCEEEEecCCCcE
Confidence 2233333 2 56666665554 89999998742 223322 2221111 124445677788667777777789
Q ss_pred EEEeCC-CCeEEEeeee
Q 017748 325 CWYDLE-RHRVRSIVEI 340 (366)
Q Consensus 325 ~~yd~~-t~~~~~v~~~ 340 (366)
..||+. .++|+.+.++
T Consensus 281 ~iw~~~~~~~~~~~~~~ 297 (379)
T 3jrp_A 281 TLWKENLEGKWEPAGEV 297 (379)
T ss_dssp EEEEEEETTEEEEEEEE
T ss_pred EEEeCCCCCccccccce
Confidence 999998 5677776333
|
| >3jrp_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum; 2.60A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=95.38 E-value=1.3 Score=38.83 Aligned_cols=143 Identities=10% Similarity=0.063 Sum_probs=78.7
Q ss_pred ccEEEEEEecCCcEEEccCCCcceecCCcceEEC----CcEEEEEeeCCCCCCCcEEEEEECCCcee-eeeCCCCccCCC
Q 017748 173 YTEVAVFSLRVNSWRRIQDFPYFWVTGTCSVFVN----GALHWTAALNQDADRNDIIIAFDLKSEEF-YQVPLPPIVGIE 247 (366)
Q Consensus 173 ~~~~~vyss~t~~W~~~~~~~~~~~~~~~~v~~~----G~lYw~~~~~~~~~~~~~i~~fD~~~~~~-~~i~lP~~~~~~ 247 (366)
...+.+|+..++.|..+........ .-..+.+. |.+...+..+ ..|..+|+.+..- ....+....
T Consensus 78 dg~v~iwd~~~~~~~~~~~~~~~~~-~v~~~~~~~~~~~~~l~~~~~d------~~i~v~d~~~~~~~~~~~~~~~~--- 147 (379)
T 3jrp_A 78 DGKVLIWKEENGRWSQIAVHAVHSA-SVNSVQWAPHEYGPLLLVASSD------GKVSVVEFKENGTTSPIIIDAHA--- 147 (379)
T ss_dssp TSCEEEEEEETTEEEEEEEECCCSS-CEEEEEECCGGGCSEEEEEETT------SEEEEEECCTTSCCCEEEEECCT---
T ss_pred CCEEEEEEcCCCceeEeeeecCCCc-ceEEEEeCCCCCCCEEEEecCC------CcEEEEecCCCCceeeEEecCCC---
Confidence 3468899999988866543321110 01122222 4444444433 3789999887632 222211111
Q ss_pred CceEEEEEE--------------CCeEEEEEeecCCCCCCcEEEEEeccCCCCCceEEEEEeccCCCceeeEEEEecC--
Q 017748 248 GYYILLEAL--------------GGCLCLLCKFDDDDDDRPWDLWVMKEYGVNDSWTKLATLLNVGGGNVKPLVYSRS-- 311 (366)
Q Consensus 248 ~~~~~l~~~--------------~g~L~l~~~~~~~~~~~~l~iW~l~~~~~~~~W~~~~~i~~~~~~~~~~~~~~~~-- 311 (366)
.....+... ++.+.+++..+. .+.+|-+... ...|.....+.... ....-+++.++
T Consensus 148 ~~v~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg-----~i~i~d~~~~--~~~~~~~~~~~~h~-~~v~~~~~sp~~~ 219 (379)
T 3jrp_A 148 IGVNSASWAPATIEEDGEHNGTKESRKFVTGGADN-----LVKIWKYNSD--AQTYVLESTLEGHS-DWVRDVAWSPTVL 219 (379)
T ss_dssp TCEEEEEECCCC----------CTTCEEEEEETTS-----CEEEEEEETT--TTEEEEEEEECCCS-SCEEEEEECCCCS
T ss_pred CceEEEEEcCccccccccccCCCCCCEEEEEeCCC-----eEEEEEecCC--CcceeeEEEEeccc-CcEeEEEECCCCC
Confidence 112222222 366666666555 8999999863 34577666665321 11445566677
Q ss_pred -CcEEEEEeeCCeEEEEeCCCCe
Q 017748 312 -EDKVLLHAVRGDLCWYDLERHR 333 (366)
Q Consensus 312 -g~~i~~~~~~~~~~~yd~~t~~ 333 (366)
+..++....++.+..||++++.
T Consensus 220 ~~~~l~s~~~dg~i~iwd~~~~~ 242 (379)
T 3jrp_A 220 LRSYLASVSQDRTCIIWTQDNEQ 242 (379)
T ss_dssp SSEEEEEEETTSCEEEEEESSTT
T ss_pred CCCeEEEEeCCCEEEEEeCCCCC
Confidence 5455555667779999999873
|
| >3nol_A Glutamine cyclotransferase; beta-propeller, glutaminyl cyclase, pyrogl transferase; 1.70A {Zymomonas mobilis} PDB: 3nom_A | Back alignment and structure |
|---|
Probab=95.37 E-value=0.3 Score=41.34 Aligned_cols=114 Identities=13% Similarity=0.075 Sum_probs=72.8
Q ss_pred EECCcEEEEEeeCCCCCCCcEEEEEECCCcee-eeeCCCCccCCCCceEEEEEECCeEEEEEeecCCCCCCcEEEEEecc
Q 017748 204 FVNGALHWTAALNQDADRNDIIIAFDLKSEEF-YQVPLPPIVGIEGYYILLEALGGCLCLLCKFDDDDDDRPWDLWVMKE 282 (366)
Q Consensus 204 ~~~G~lYw~~~~~~~~~~~~~i~~fD~~~~~~-~~i~lP~~~~~~~~~~~l~~~~g~L~l~~~~~~~~~~~~l~iW~l~~ 282 (366)
+.+|.+|.-++.... ..|..+|+++.+. ..+++|... +.--++..+++||++.-.+. .+|+++.
T Consensus 50 ~~~~~LyestG~~g~----S~v~~vD~~Tgkv~~~~~l~~~~----FgeGit~~g~~ly~ltw~~~-------~v~v~D~ 114 (262)
T 3nol_A 50 YRNGYFYESTGLNGR----SSIRKVDIESGKTLQQIELGKRY----FGEGISDWKDKIVGLTWKNG-------LGFVWNI 114 (262)
T ss_dssp EETTEEEEEEEETTE----EEEEEECTTTCCEEEEEECCTTC----CEEEEEEETTEEEEEESSSS-------EEEEEET
T ss_pred EECCEEEEECCCCCC----ceEEEEECCCCcEEEEEecCCcc----ceeEEEEeCCEEEEEEeeCC-------EEEEEEC
Confidence 456777776655321 3799999999876 555777654 44456778999999865433 3556664
Q ss_pred CCCCCceEEEEEeccCCCceeeEEEEecCCcEEEEEeeCCeEEEEeCCCCeEEEeeee
Q 017748 283 YGVNDSWTKLATLLNVGGGNVKPLVYSRSEDKVLLHAVRGDLCWYDLERHRVRSIVEI 340 (366)
Q Consensus 283 ~~~~~~W~~~~~i~~~~~~~~~~~~~~~~g~~i~~~~~~~~~~~yd~~t~~~~~v~~~ 340 (366)
.+-..+.+++.... ..++..+|+.+++.....++..+|++|.+...-..+
T Consensus 115 ----~t~~~~~ti~~~~e----G~glt~dg~~L~~SdGs~~i~~iDp~T~~v~~~I~V 164 (262)
T 3nol_A 115 ----RNLRQVRSFNYDGE----GWGLTHNDQYLIMSDGTPVLRFLDPESLTPVRTITV 164 (262)
T ss_dssp ----TTCCEEEEEECSSC----CCCEEECSSCEEECCSSSEEEEECTTTCSEEEEEEC
T ss_pred ----ccCcEEEEEECCCC----ceEEecCCCEEEEECCCCeEEEEcCCCCeEEEEEEe
Confidence 22445666765331 234455676777766566799999998765432255
|
| >1l0q_A Surface layer protein; SLP, S-layer, 7-bladed beta-propeller superfamily, protein binding; HET: YCM; 2.40A {Methanosarcina mazei} SCOP: b.1.3.1 b.69.2.3 | Back alignment and structure |
|---|
Probab=95.25 E-value=1.5 Score=38.85 Aligned_cols=186 Identities=9% Similarity=0.012 Sum_probs=98.7
Q ss_pred CCccEEEEEeccccceeecCCcCCCCCCCCcceEEEeeecCCCCeEEEEEEEEcCCCCccEEEEEEecCCcEEEccCCCc
Q 017748 115 SRRNIMLLLNPLTKRHRVLPTFYRDLSRCVPSLEGFGFDVGSGDFKLVKILAFGKPMNYTEVAVFSLRVNSWRRIQDFPY 194 (366)
Q Consensus 115 ~~~~~~~V~NP~t~~~~~LP~~~~~~~~~~~~~~~lg~d~~~~~ykvv~~~~~~~~~~~~~~~vyss~t~~W~~~~~~~~ 194 (366)
....+. ++|+.+++....-... .....+.+++.. .+-++.. .....+.+++..++.....-....
T Consensus 94 ~~~~v~-v~d~~~~~~~~~~~~~-------~~~~~~~~s~dg-~~l~~~~------~~~~~v~~~d~~~~~~~~~~~~~~ 158 (391)
T 1l0q_A 94 ASSTLS-VIDTTSNTVAGTVKTG-------KSPLGLALSPDG-KKLYVTN------NGDKTVSVINTVTKAVINTVSVGR 158 (391)
T ss_dssp TTTEEE-EEETTTTEEEEEEECS-------SSEEEEEECTTS-SEEEEEE------TTTTEEEEEETTTTEEEEEEECCS
T ss_pred CCCEEE-EEECCCCeEEEEEeCC-------CCcceEEECCCC-CEEEEEe------CCCCEEEEEECCCCcEEEEEecCC
Confidence 446788 9999998765432221 123456666542 3322221 114578889888776543211111
Q ss_pred ceecCCcceEE--CCcEEEEEeeCCCCCCCcEEEEEECCCceeeee-CCCCccCCCCceEEEEEE-CCeEEEEEeecCCC
Q 017748 195 FWVTGTCSVFV--NGALHWTAALNQDADRNDIIIAFDLKSEEFYQV-PLPPIVGIEGYYILLEAL-GGCLCLLCKFDDDD 270 (366)
Q Consensus 195 ~~~~~~~~v~~--~G~lYw~~~~~~~~~~~~~i~~fD~~~~~~~~i-~lP~~~~~~~~~~~l~~~-~g~L~l~~~~~~~~ 270 (366)
. ...+.+ +|...++....+ ..|..+|+.+.+.... ..+. ....+... +|+..++.....
T Consensus 159 ~----~~~~~~~~dg~~l~~~~~~~-----~~v~~~d~~~~~~~~~~~~~~------~~~~~~~~~~g~~l~~~~~~~-- 221 (391)
T 1l0q_A 159 S----PKGIAVTPDGTKVYVANFDS-----MSISVIDTVTNSVIDTVKVEA------APSGIAVNPEGTKAYVTNVDK-- 221 (391)
T ss_dssp S----EEEEEECTTSSEEEEEETTT-----TEEEEEETTTTEEEEEEECSS------EEEEEEECTTSSEEEEEEECS--
T ss_pred C----cceEEECCCCCEEEEEeCCC-----CEEEEEECCCCeEEEEEecCC------CccceEECCCCCEEEEEecCc--
Confidence 1 112222 455444443332 3799999998765433 3222 12223333 455444444310
Q ss_pred CCCcEEEEEeccCCCCCceEEEEEeccCCCceeeEEEEecCCcEEEEE-eeCCeEEEEeCCCCeEEEeeee
Q 017748 271 DDRPWDLWVMKEYGVNDSWTKLATLLNVGGGNVKPLVYSRSEDKVLLH-AVRGDLCWYDLERHRVRSIVEI 340 (366)
Q Consensus 271 ~~~~l~iW~l~~~~~~~~W~~~~~i~~~~~~~~~~~~~~~~g~~i~~~-~~~~~~~~yd~~t~~~~~v~~~ 340 (366)
....+.+|-++. ...+..++.... ..-+.+..+|+.|++. ..++.+..||+++++.......
T Consensus 222 ~~~~v~~~d~~~------~~~~~~~~~~~~--~~~~~~s~dg~~l~~s~~~d~~v~v~d~~~~~~~~~~~~ 284 (391)
T 1l0q_A 222 YFNTVSMIDTGT------NKITARIPVGPD--PAGIAVTPDGKKVYVALSFXNTVSVIDTATNTITATMAV 284 (391)
T ss_dssp SCCEEEEEETTT------TEEEEEEECCSS--EEEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEEC
T ss_pred CCCcEEEEECCC------CeEEEEEecCCC--ccEEEEccCCCEEEEEcCCCCEEEEEECCCCcEEEEEEC
Confidence 011788887764 233445544322 3345667778667666 4467799999999987765344
|
| >1gxr_A ESG1, transducin-like enhancer protein 1; transcriptional CO-repressor, WD40, transcription repressor, WD repeat; 1.65A {Homo sapiens} SCOP: b.69.4.1 PDB: 2ce8_A 2ce9_A | Back alignment and structure |
|---|
Probab=95.15 E-value=1.4 Score=37.86 Aligned_cols=186 Identities=8% Similarity=0.050 Sum_probs=96.0
Q ss_pred CccEEEEEeccccceee-cCCcCCCCCCCCcceEEEeeecCCCCeEEEEEEEEcCCCCccEEEEEEecCCcEEEccCCCc
Q 017748 116 RRNIMLLLNPLTKRHRV-LPTFYRDLSRCVPSLEGFGFDVGSGDFKLVKILAFGKPMNYTEVAVFSLRVNSWRRIQDFPY 194 (366)
Q Consensus 116 ~~~~~~V~NP~t~~~~~-LP~~~~~~~~~~~~~~~lg~d~~~~~ykvv~~~~~~~~~~~~~~~vyss~t~~W~~~~~~~~ 194 (366)
+..+. |||..+++... +........ ......+.+.+. +.+-++. .. ...+.+|+..++..........
T Consensus 71 dg~i~-iw~~~~~~~~~~~~~~~~~~~--~~~v~~~~~~~~-~~~l~~~-~~------d~~i~~~d~~~~~~~~~~~~~~ 139 (337)
T 1gxr_A 71 KGCVK-VWDISHPGNKSPVSQLDCLNR--DNYIRSCKLLPD-GCTLIVG-GE------ASTLSIWDLAAPTPRIKAELTS 139 (337)
T ss_dssp BSEEE-EEETTSTTCCSCSEEEECSCT--TSBEEEEEECTT-SSEEEEE-ES------SSEEEEEECCCC--EEEEEEEC
T ss_pred CCeEE-EEECCCCCceeeeecccccCC--CCcEEEEEEcCC-CCEEEEE-cC------CCcEEEEECCCCCcceeeeccc
Confidence 55677 88887754321 111110001 224455666663 2332222 21 4578899988876543321111
Q ss_pred ceecCCcceEE--CCcEEEEEeeCCCCCCCcEEEEEECCCceeee-eCCCCccCCCCceEEEEEE-CCeEEEEEeecCCC
Q 017748 195 FWVTGTCSVFV--NGALHWTAALNQDADRNDIIIAFDLKSEEFYQ-VPLPPIVGIEGYYILLEAL-GGCLCLLCKFDDDD 270 (366)
Q Consensus 195 ~~~~~~~~v~~--~G~lYw~~~~~~~~~~~~~i~~fD~~~~~~~~-i~lP~~~~~~~~~~~l~~~-~g~L~l~~~~~~~~ 270 (366)
.. ..-..+.+ +|.....+... ..|..+|+.+.+... +..+.. ....+... +|+..++...+.
T Consensus 140 ~~-~~i~~~~~~~~~~~l~~~~~d------g~v~~~d~~~~~~~~~~~~~~~-----~i~~~~~~~~~~~l~~~~~dg-- 205 (337)
T 1gxr_A 140 SA-PACYALAISPDSKVCFSCCSD------GNIAVWDLHNQTLVRQFQGHTD-----GASCIDISNDGTKLWTGGLDN-- 205 (337)
T ss_dssp SS-SCEEEEEECTTSSEEEEEETT------SCEEEEETTTTEEEEEECCCSS-----CEEEEEECTTSSEEEEEETTS--
T ss_pred CC-CceEEEEECCCCCEEEEEeCC------CcEEEEeCCCCceeeeeecccC-----ceEEEEECCCCCEEEEEecCC--
Confidence 00 00011222 45555554443 268999998865433 232221 12233333 566666555444
Q ss_pred CCCcEEEEEeccCCCCCceEEEEEeccCCCceeeEEEEecCCcEEEEEeeCCeEEEEeCCCCeEEEe
Q 017748 271 DDRPWDLWVMKEYGVNDSWTKLATLLNVGGGNVKPLVYSRSEDKVLLHAVRGDLCWYDLERHRVRSI 337 (366)
Q Consensus 271 ~~~~l~iW~l~~~~~~~~W~~~~~i~~~~~~~~~~~~~~~~g~~i~~~~~~~~~~~yd~~t~~~~~v 337 (366)
.+.+|-++.. ..+..+..... ..-+.+.++++.++....++.+..||+++++...+
T Consensus 206 ---~i~~~d~~~~------~~~~~~~~~~~--v~~~~~s~~~~~l~~~~~~~~i~~~~~~~~~~~~~ 261 (337)
T 1gxr_A 206 ---TVRSWDLREG------RQLQQHDFTSQ--IFSLGYCPTGEWLAVGMESSNVEVLHVNKPDKYQL 261 (337)
T ss_dssp ---EEEEEETTTT------EEEEEEECSSC--EEEEEECTTSSEEEEEETTSCEEEEETTSSCEEEE
T ss_pred ---cEEEEECCCC------ceEeeecCCCc--eEEEEECCCCCEEEEEcCCCcEEEEECCCCCeEEE
Confidence 8999987652 22333333222 44566677786777777777899999999876555
|
| >1l0q_A Surface layer protein; SLP, S-layer, 7-bladed beta-propeller superfamily, protein binding; HET: YCM; 2.40A {Methanosarcina mazei} SCOP: b.1.3.1 b.69.2.3 | Back alignment and structure |
|---|
Probab=95.13 E-value=1.6 Score=38.62 Aligned_cols=180 Identities=12% Similarity=0.018 Sum_probs=94.8
Q ss_pred CCccEEEEEeccccceeecCCcCCCCCCCCcceEEEeeecCCCCeEEEEEEEEcCCCCccEEEEEEecCCcEEEccCCCc
Q 017748 115 SRRNIMLLLNPLTKRHRVLPTFYRDLSRCVPSLEGFGFDVGSGDFKLVKILAFGKPMNYTEVAVFSLRVNSWRRIQDFPY 194 (366)
Q Consensus 115 ~~~~~~~V~NP~t~~~~~LP~~~~~~~~~~~~~~~lg~d~~~~~ykvv~~~~~~~~~~~~~~~vyss~t~~W~~~~~~~~ 194 (366)
....+. ++|..+++....-... .....+.+++.. .+-++... ....+.+++..++.-...-....
T Consensus 10 ~d~~v~-v~d~~~~~~~~~~~~~-------~~~~~~~~s~dg-~~l~~~~~------~d~~i~v~d~~~~~~~~~~~~~~ 74 (391)
T 1l0q_A 10 ESDNIS-VIDVTSNKVTATIPVG-------SNPMGAVISPDG-TKVYVANA------HSNDVSIIDTATNNVIATVPAGS 74 (391)
T ss_dssp TTTEEE-EEETTTTEEEEEEECS-------SSEEEEEECTTS-SEEEEEEG------GGTEEEEEETTTTEEEEEEECSS
T ss_pred CCCEEE-EEECCCCeEEEEeecC-------CCcceEEECCCC-CEEEEECC------CCCeEEEEECCCCeEEEEEECCC
Confidence 456677 9999888765432111 123455666542 23222221 14578889988775433211111
Q ss_pred ceecCCcceEE--CCcEEEEEeeCCCCCCCcEEEEEECCCceeeee-CCCCccCCCCceEEEEEE-CCe-EEEEEeecCC
Q 017748 195 FWVTGTCSVFV--NGALHWTAALNQDADRNDIIIAFDLKSEEFYQV-PLPPIVGIEGYYILLEAL-GGC-LCLLCKFDDD 269 (366)
Q Consensus 195 ~~~~~~~~v~~--~G~lYw~~~~~~~~~~~~~i~~fD~~~~~~~~i-~lP~~~~~~~~~~~l~~~-~g~-L~l~~~~~~~ 269 (366)
. ..++.+ +|...+++.... ..|..+|+.+.+.... ..+.. ...+... +|+ |++....+.
T Consensus 75 ~----v~~~~~spdg~~l~~~~~~~-----~~v~v~d~~~~~~~~~~~~~~~------~~~~~~s~dg~~l~~~~~~~~- 138 (391)
T 1l0q_A 75 S----PQGVAVSPDGKQVYVTNMAS-----STLSVIDTTSNTVAGTVKTGKS------PLGLALSPDGKKLYVTNNGDK- 138 (391)
T ss_dssp S----EEEEEECTTSSEEEEEETTT-----TEEEEEETTTTEEEEEEECSSS------EEEEEECTTSSEEEEEETTTT-
T ss_pred C----ccceEECCCCCEEEEEECCC-----CEEEEEECCCCeEEEEEeCCCC------cceEEECCCCCEEEEEeCCCC-
Confidence 1 112222 455444443321 3799999998766433 33221 2233333 455 444443333
Q ss_pred CCCCcEEEEEeccCCCCCceEEEEEeccCCCceeeEEEEecCCcEEEEEe-eCCeEEEEeCCCCeEEEe
Q 017748 270 DDDRPWDLWVMKEYGVNDSWTKLATLLNVGGGNVKPLVYSRSEDKVLLHA-VRGDLCWYDLERHRVRSI 337 (366)
Q Consensus 270 ~~~~~l~iW~l~~~~~~~~W~~~~~i~~~~~~~~~~~~~~~~g~~i~~~~-~~~~~~~yd~~t~~~~~v 337 (366)
.+.+|-+.. .+. +..+..... ...+.+..+|+.+++.. .++.+..||+++++....
T Consensus 139 ----~v~~~d~~~----~~~--~~~~~~~~~--~~~~~~~~dg~~l~~~~~~~~~v~~~d~~~~~~~~~ 195 (391)
T 1l0q_A 139 ----TVSVINTVT----KAV--INTVSVGRS--PKGIAVTPDGTKVYVANFDSMSISVIDTVTNSVIDT 195 (391)
T ss_dssp ----EEEEEETTT----TEE--EEEEECCSS--EEEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEE
T ss_pred ----EEEEEECCC----CcE--EEEEecCCC--cceEEECCCCCEEEEEeCCCCEEEEEECCCCeEEEE
Confidence 888887654 222 233333222 44566777776676554 456799999999887655
|
| >3bws_A Protein LP49; two-domain, immunoglobulin-like, 7-bladed beta propeller, unknown function; 1.99A {Leptospira interrogans} | Back alignment and structure |
|---|
Probab=94.97 E-value=2 Score=38.69 Aligned_cols=194 Identities=9% Similarity=0.035 Sum_probs=102.1
Q ss_pred eceeEEeec-CCccEEEEEeccccceee-cCCcCCCCCCCCcceEEEeeecCCCCeEEEEEEEEcCCCCccEEEEEEecC
Q 017748 106 CNGLLALED-SRRNIMLLLNPLTKRHRV-LPTFYRDLSRCVPSLEGFGFDVGSGDFKLVKILAFGKPMNYTEVAVFSLRV 183 (366)
Q Consensus 106 ~~Gll~~~~-~~~~~~~V~NP~t~~~~~-LP~~~~~~~~~~~~~~~lg~d~~~~~ykvv~~~~~~~~~~~~~~~vyss~t 183 (366)
.+|-+++.. ....+. ++|+.+++... ++.. ......+.+++.. .+-++... ....+.+|+..+
T Consensus 179 ~~~~~~~s~~~d~~v~-~~d~~~~~~~~~~~~~-------~~~~~~~~~~~~~-~~l~~~~~------~~~~i~~~d~~~ 243 (433)
T 3bws_A 179 EHNELWVSQMQANAVH-VFDLKTLAYKATVDLT-------GKWSKILLYDPIR-DLVYCSNW------ISEDISVIDRKT 243 (433)
T ss_dssp GGTEEEEEEGGGTEEE-EEETTTCCEEEEEECS-------SSSEEEEEEETTT-TEEEEEET------TTTEEEEEETTT
T ss_pred CCCEEEEEECCCCEEE-EEECCCceEEEEEcCC-------CCCeeEEEEcCCC-CEEEEEec------CCCcEEEEECCC
Confidence 355544443 446677 99988866533 3311 1234456666643 23222211 134688899887
Q ss_pred CcEEEccCCCcceecCCcceEE--CCcEEEEEeeCCCCC--CCcEEEEEECCCceeeee-CCCCccCCCCceEEEEEE-C
Q 017748 184 NSWRRIQDFPYFWVTGTCSVFV--NGALHWTAALNQDAD--RNDIIIAFDLKSEEFYQV-PLPPIVGIEGYYILLEAL-G 257 (366)
Q Consensus 184 ~~W~~~~~~~~~~~~~~~~v~~--~G~lYw~~~~~~~~~--~~~~i~~fD~~~~~~~~i-~lP~~~~~~~~~~~l~~~-~ 257 (366)
+.....-..... ..++.+ +|...+.+....... ....|..+|+.+.+.... ..+.. ...+... +
T Consensus 244 ~~~~~~~~~~~~----~~~~~~~~~g~~l~~~~~~~~~~~~~dg~i~~~d~~~~~~~~~~~~~~~------~~~~~~~~~ 313 (433)
T 3bws_A 244 KLEIRKTDKIGL----PRGLLLSKDGKELYIAQFSASNQESGGGRLGIYSMDKEKLIDTIGPPGN------KRHIVSGNT 313 (433)
T ss_dssp TEEEEECCCCSE----EEEEEECTTSSEEEEEEEESCTTCSCCEEEEEEETTTTEEEEEEEEEEC------EEEEEECSS
T ss_pred CcEEEEecCCCC----ceEEEEcCCCCEEEEEECCCCccccCCCeEEEEECCCCcEEeeccCCCC------cceEEECCC
Confidence 765332111111 112222 565555554321100 124799999988765333 22211 1122222 3
Q ss_pred C-eEEEEEeecCCCCCCcEEEEEeccCCCCCceEEEEEeccCCCceeeEEEEecCCcEEEEEeeC---------------
Q 017748 258 G-CLCLLCKFDDDDDDRPWDLWVMKEYGVNDSWTKLATLLNVGGGNVKPLVYSRSEDKVLLHAVR--------------- 321 (366)
Q Consensus 258 g-~L~l~~~~~~~~~~~~l~iW~l~~~~~~~~W~~~~~i~~~~~~~~~~~~~~~~g~~i~~~~~~--------------- 321 (366)
| .|++....+. .+.+|.++. ...+..++.... ..-+++.++|..+++...+
T Consensus 314 g~~l~~~~~~~~-----~v~v~d~~~------~~~~~~~~~~~~--~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~g~~d 380 (433)
T 3bws_A 314 ENKIYVSDMCCS-----KIEVYDLKE------KKVQKSIPVFDK--PNTIALSPDGKYLYVSCRGPNHPTEGYLKKGLVL 380 (433)
T ss_dssp TTEEEEEETTTT-----EEEEEETTT------TEEEEEEECSSS--EEEEEECTTSSEEEEEECCCCCTTTCTTSCCSSC
T ss_pred CCEEEEEecCCC-----EEEEEECCC------CcEEEEecCCCC--CCeEEEcCCCCEEEEEecCCCccccccccccccc
Confidence 5 4555544443 899998774 233444443322 4556677778667766542
Q ss_pred CeEEEEeCCCCeEEEe
Q 017748 322 GDLCWYDLERHRVRSI 337 (366)
Q Consensus 322 ~~~~~yd~~t~~~~~v 337 (366)
+.+..||+++++....
T Consensus 381 g~v~~~d~~~~~~~~~ 396 (433)
T 3bws_A 381 GKVYVIDTTTDTVKEF 396 (433)
T ss_dssp CEEEEEETTTTEEEEE
T ss_pred eEEEEEECCCCcEEEE
Confidence 4799999999887655
|
| >4e54_B DNA damage-binding protein 2; beta barrel, double helix, DDB1:WD40 beta-barrel fold, DNA D DNA repair, HOST-virus interactions; HET: DNA 3DR; 2.85A {Homo sapiens} PDB: 3ei4_B* | Back alignment and structure |
|---|
Probab=94.92 E-value=0.66 Score=42.31 Aligned_cols=193 Identities=12% Similarity=0.097 Sum_probs=96.1
Q ss_pred eEEeecCCccEEEEEeccccceeecCCcCCCCCCCCcceEEEeeecCCCCeEEEEEEEEcCCCCccEEEEEEecCCcEEE
Q 017748 109 LLALEDSRRNIMLLLNPLTKRHRVLPTFYRDLSRCVPSLEGFGFDVGSGDFKLVKILAFGKPMNYTEVAVFSLRVNSWRR 188 (366)
Q Consensus 109 ll~~~~~~~~~~~V~NP~t~~~~~LP~~~~~~~~~~~~~~~lg~d~~~~~ykvv~~~~~~~~~~~~~~~vyss~t~~W~~ 188 (366)
+|.....+..+. |||..+++...+-....+ .....++.|.|..+.+-+ ... ....+.+++.+++.-+.
T Consensus 134 ~lasGs~dg~i~-lWd~~~~~~~~~~~~~gH----~~~V~~l~f~p~~~~~l~-s~s------~D~~v~iwd~~~~~~~~ 201 (435)
T 4e54_B 134 TVAVGSKGGDIM-LWNFGIKDKPTFIKGIGA----GGSITGLKFNPLNTNQFY-ASS------MEGTTRLQDFKGNILRV 201 (435)
T ss_dssp CEEEEETTSCEE-EECSSCCSCCEEECCCSS----SCCCCEEEECSSCTTEEE-EEC------SSSCEEEEETTSCEEEE
T ss_pred EEEEEeCCCEEE-EEECCCCCceeEEEccCC----CCCEEEEEEeCCCCCEEE-EEe------CCCEEEEeeccCCceeE
Confidence 555555566788 999988765433222111 113345667665444422 221 13457888887766554
Q ss_pred ccCCCcceecCCcceE--ECCcEEEEEeeCCCCCCCcEEEEEECCCceeeeeCCCCccCCCCceEEEEEE-CCe-EEEEE
Q 017748 189 IQDFPYFWVTGTCSVF--VNGALHWTAALNQDADRNDIIIAFDLKSEEFYQVPLPPIVGIEGYYILLEAL-GGC-LCLLC 264 (366)
Q Consensus 189 ~~~~~~~~~~~~~~v~--~~G~lYw~~~~~~~~~~~~~i~~fD~~~~~~~~i~lP~~~~~~~~~~~l~~~-~g~-L~l~~ 264 (366)
+....... ....++. -+|.+...+... ..|..+|+..+....+..... ....+... ++. +.+.+
T Consensus 202 ~~~~~~~~-~~~~~~~~~~~~~~l~~g~~d------g~i~~wd~~~~~~~~~~~h~~-----~v~~v~~~p~~~~~~~s~ 269 (435)
T 4e54_B 202 FASSDTIN-IWFCSLDVSASSRMVVTGDNV------GNVILLNMDGKELWNLRMHKK-----KVTHVALNPCCDWFLATA 269 (435)
T ss_dssp EECCSSCS-CCCCCEEEETTTTEEEEECSS------SBEEEEESSSCBCCCSBCCSS-----CEEEEEECTTCSSEEEEE
T ss_pred EeccCCCC-ccEEEEEECCCCCEEEEEeCC------CcEeeeccCcceeEEEecccc-----eEEeeeecCCCceEEEEe
Confidence 42211100 0011222 245555444433 368889987654433322211 12233332 344 44444
Q ss_pred eecCCCCCCcEEEEEeccCCCCCceEEEEEeccCCCceeeEEEEecCCcEEEEEeeCCeEEEEeCCCCeE
Q 017748 265 KFDDDDDDRPWDLWVMKEYGVNDSWTKLATLLNVGGGNVKPLVYSRSEDKVLLHAVRGDLCWYDLERHRV 334 (366)
Q Consensus 265 ~~~~~~~~~~l~iW~l~~~~~~~~W~~~~~i~~~~~~~~~~~~~~~~g~~i~~~~~~~~~~~yd~~t~~~ 334 (366)
..+. .+.||-+.......... ....... ...-+++..+|..|+....++.+..||+.++..
T Consensus 270 s~d~-----~v~iwd~~~~~~~~~~~--~~~~h~~--~v~~~~~spdg~~l~s~~~D~~i~iwd~~~~~~ 330 (435)
T 4e54_B 270 SVDQ-----TVKIWDLRQVRGKASFL--YSLPHRH--PVNAACFSPDGARLLTTDQKSEIRVYSASQWDC 330 (435)
T ss_dssp ETTS-----BCCEEETTTCCSSSCCS--BCCBCSS--CEEECCBCTTSSEEEEEESSSCEEEEESSSSSS
T ss_pred cCcc-----eeeEEecccccccceEE--Eeeeccc--cccceeECCCCCeeEEEcCCCEEEEEECCCCcc
Confidence 4444 79999876542211110 0001111 122334556776676677777899999988654
|
| >3dwl_C Actin-related protein 2/3 complex subunit 1; propellor, actin-binding, ATP-binding, cytoskeleton, nucleot binding, WD repeat; HET: ATP; 3.78A {Schizosaccharomyces pombe} | Back alignment and structure |
|---|
Probab=94.78 E-value=0.62 Score=41.17 Aligned_cols=189 Identities=11% Similarity=0.012 Sum_probs=87.3
Q ss_pred CCccEEEEEeccccceeecCCcCCCCCCCCcceEEEeeecCCCCeEEEEEEEEcCCCCccEEEEEEecCCc-EEEccCCC
Q 017748 115 SRRNIMLLLNPLTKRHRVLPTFYRDLSRCVPSLEGFGFDVGSGDFKLVKILAFGKPMNYTEVAVFSLRVNS-WRRIQDFP 193 (366)
Q Consensus 115 ~~~~~~~V~NP~t~~~~~LP~~~~~~~~~~~~~~~lg~d~~~~~ykvv~~~~~~~~~~~~~~~vyss~t~~-W~~~~~~~ 193 (366)
.+..+. |||..++.+..+-....+ ......+.+.+.. .+-+.+ . ....+.+|+..++. |.....+.
T Consensus 31 ~d~~i~-iw~~~~~~~~~~~~~~~h----~~~v~~~~~s~~~-~~l~s~-s------~d~~v~vwd~~~~~~~~~~~~~~ 97 (377)
T 3dwl_C 31 ATNQVE-LYEQDGNGWKHARTFSDH----DKIVTCVDWAPKS-NRIVTC-S------QDRNAYVYEKRPDGTWKQTLVLL 97 (377)
T ss_dssp SSSCBC-EEEEETTEEEECCCBCCC----SSCEEEEEECTTT-CCEEEE-E------TTSSEEEC------CCCCEEECC
T ss_pred CCCEEE-EEEccCCceEEEEEEecC----CceEEEEEEeCCC-CEEEEE-e------CCCeEEEEEcCCCCceeeeeEec
Confidence 455677 899888754444333322 2234556666653 332222 1 13457888887765 44322111
Q ss_pred cceecCCcceEE--CCcEEEEEeeCCCCCCCcEEEEEECCCce----eeeeCCCCccCCCCceEEEEEE-CCeEEEEEee
Q 017748 194 YFWVTGTCSVFV--NGALHWTAALNQDADRNDIIIAFDLKSEE----FYQVPLPPIVGIEGYYILLEAL-GGCLCLLCKF 266 (366)
Q Consensus 194 ~~~~~~~~~v~~--~G~lYw~~~~~~~~~~~~~i~~fD~~~~~----~~~i~lP~~~~~~~~~~~l~~~-~g~L~l~~~~ 266 (366)
... ..-..+.+ +|.....+..+ ..|..+|+.+.+ ...+..|... ....+... +|++.+.+..
T Consensus 98 ~~~-~~v~~~~~~~~~~~l~~~~~d------~~i~iwd~~~~~~~~~~~~~~~~h~~----~v~~~~~~~~~~~l~~~~~ 166 (377)
T 3dwl_C 98 RLN-RAATFVRWSPNEDKFAVGSGA------RVISVCYFEQENDWWVSKHLKRPLRS----TILSLDWHPNNVLLAAGCA 166 (377)
T ss_dssp CCS-SCEEEEECCTTSSCCEEEESS------SCEEECCC-----CCCCEEECSSCCS----CEEEEEECTTSSEEEEEES
T ss_pred ccC-CceEEEEECCCCCEEEEEecC------CeEEEEEECCcccceeeeEeecccCC----CeEEEEEcCCCCEEEEEeC
Confidence 100 00011111 34443333332 258888888765 2333332211 22333333 4666665555
Q ss_pred cCCCCCCcEEEEEeccCC-----CCCceE-------EEEEeccCCCceeeEEEEecCCcEEEEEeeCCeEEEEeCCCCeE
Q 017748 267 DDDDDDRPWDLWVMKEYG-----VNDSWT-------KLATLLNVGGGNVKPLVYSRSEDKVLLHAVRGDLCWYDLERHRV 334 (366)
Q Consensus 267 ~~~~~~~~l~iW~l~~~~-----~~~~W~-------~~~~i~~~~~~~~~~~~~~~~g~~i~~~~~~~~~~~yd~~t~~~ 334 (366)
+. .+.+|.++... ....|. .+..+... ....-+++.++|..|+....++.+..||+++++.
T Consensus 167 d~-----~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~v~~~~~sp~~~~l~~~~~d~~i~iwd~~~~~~ 239 (377)
T 3dwl_C 167 DR-----KAYVLSAYVRDVDAKPEASVWGSRLPFNTVCAEYPSG--GWVHAVGFSPSGNALAYAGHDSSVTIAYPSAPEQ 239 (377)
T ss_dssp SS-----CEEEEEECCSSCC-CCCSCSSCSCCCEEEEEECCCCS--SSEEEEEECTTSSCEEEEETTTEEC-CEECSTTS
T ss_pred CC-----EEEEEEEEecccCCCccccccccccchhhhhhcccCC--ceEEEEEECCCCCEEEEEeCCCcEEEEECCCCCC
Confidence 54 89999986321 111221 22222111 1244456677886666677778899999998864
|
| >3nok_A Glutaminyl cyclase; beta-propeller, cyclotransferase, pyrogl transferase; HET: MES DDQ; 1.65A {Myxococcus xanthus} | Back alignment and structure |
|---|
Probab=94.74 E-value=0.41 Score=40.61 Aligned_cols=114 Identities=11% Similarity=0.026 Sum_probs=71.9
Q ss_pred ceE-ECCcEEEEEeeCCCCCCCcEEEEEECCCcee-eeeCCCCccCCCCceEEEEEECCeEEEEEeecCCCCCCcEEEEE
Q 017748 202 SVF-VNGALHWTAALNQDADRNDIIIAFDLKSEEF-YQVPLPPIVGIEGYYILLEALGGCLCLLCKFDDDDDDRPWDLWV 279 (366)
Q Consensus 202 ~v~-~~G~lYw~~~~~~~~~~~~~i~~fD~~~~~~-~~i~lP~~~~~~~~~~~l~~~~g~L~l~~~~~~~~~~~~l~iW~ 279 (366)
++. .+|.+|.-++.. ..|..+|+++++. ..+ +|... +.--++..+++||++.-.+. .+|+
T Consensus 59 GL~~~~~~Ly~stG~~------g~v~~iD~~Tgkv~~~~-l~~~~----FgeGit~~g~~Ly~ltw~~~-------~v~V 120 (268)
T 3nok_A 59 GLVFHQGHFFESTGHQ------GTLRQLSLESAQPVWME-RLGNI----FAEGLASDGERLYQLTWTEG-------LLFT 120 (268)
T ss_dssp EEEEETTEEEEEETTT------TEEEECCSSCSSCSEEE-ECTTC----CEEEEEECSSCEEEEESSSC-------EEEE
T ss_pred eEEEECCEEEEEcCCC------CEEEEEECCCCcEEeEE-CCCCc----ceeEEEEeCCEEEEEEccCC-------EEEE
Confidence 444 445666555443 2699999999876 445 76643 33346677899999865433 3566
Q ss_pred eccCCCCCceEEEEEeccCCCceeeEEEEecCCcEEEEEeeCCeEEEEeCCCCeEEEeeeec
Q 017748 280 MKEYGVNDSWTKLATLLNVGGGNVKPLVYSRSEDKVLLHAVRGDLCWYDLERHRVRSIVEID 341 (366)
Q Consensus 280 l~~~~~~~~W~~~~~i~~~~~~~~~~~~~~~~g~~i~~~~~~~~~~~yd~~t~~~~~v~~~~ 341 (366)
++- .+-..+.+++...- ..++..+|+.+++.....++..+|++|.+...-..+.
T Consensus 121 ~D~----~Tl~~~~ti~~~~e----GwGLt~Dg~~L~vSdGs~~l~~iDp~T~~v~~~I~V~ 174 (268)
T 3nok_A 121 WSG----MPPQRERTTRYSGE----GWGLCYWNGKLVRSDGGTMLTFHEPDGFALVGAVQVK 174 (268)
T ss_dssp EET----TTTEEEEEEECSSC----CCCEEEETTEEEEECSSSEEEEECTTTCCEEEEEECE
T ss_pred EEC----CcCcEEEEEeCCCc----eeEEecCCCEEEEECCCCEEEEEcCCCCeEEEEEEeC
Confidence 665 23556667765331 2344556767777766667999999997765332553
|
| >3q7m_A Lipoprotein YFGL, BAMB; beta-propeller, BAM complex, outer membrane protein folding, negative, BAMA, protein binding; 1.65A {Escherichia coli} PDB: 3q7n_A 3q7o_A 3p1l_A 3prw_A 2yh3_A 3q54_A | Back alignment and structure |
|---|
Probab=94.74 E-value=1.4 Score=39.07 Aligned_cols=119 Identities=13% Similarity=0.142 Sum_probs=68.4
Q ss_pred CcceEECCcEEEEEeeCCCCCCCcEEEEEECCCceeee-eCCCCccC-----CCCceEEEEEECCeEEEEEeecCCCCCC
Q 017748 200 TCSVFVNGALHWTAALNQDADRNDIIIAFDLKSEEFYQ-VPLPPIVG-----IEGYYILLEALGGCLCLLCKFDDDDDDR 273 (366)
Q Consensus 200 ~~~v~~~G~lYw~~~~~~~~~~~~~i~~fD~~~~~~~~-i~lP~~~~-----~~~~~~~l~~~~g~L~l~~~~~~~~~~~ 273 (366)
..++..+|.+|.....+ .|.+||.++.+... ..++.... ........+..+|.|++.... .
T Consensus 47 ~~p~v~~~~v~~~~~~g-------~v~a~d~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~~~~-g----- 113 (376)
T 3q7m_A 47 LHPALADNVVYAADRAG-------LVKALNADDGKEIWSVSLAEKDGWFSKEPALLSGGVTVSGGHVYIGSEK-A----- 113 (376)
T ss_dssp CCCEEETTEEEEECTTS-------EEEEEETTTCCEEEEEECCC---CCSCCCCCEEEEEEEETTEEEEEETT-S-----
T ss_pred eccEEECCEEEEEcCCC-------eEEEEEccCCceeeeecCccccccccccCcccccCceEeCCEEEEEcCC-C-----
Confidence 35788899998776443 79999998655432 23332110 111234556678888875532 1
Q ss_pred cEEEEEeccCCCCCceEEEEEeccCCCceeeEEEEecCCcEEEEEeeCCeEEEEeCCCCeEEEeeee
Q 017748 274 PWDLWVMKEYGVNDSWTKLATLLNVGGGNVKPLVYSRSEDKVLLHAVRGDLCWYDLERHRVRSIVEI 340 (366)
Q Consensus 274 ~l~iW~l~~~~~~~~W~~~~~i~~~~~~~~~~~~~~~~g~~i~~~~~~~~~~~yd~~t~~~~~v~~~ 340 (366)
. |..++....+..|... ++.... ..|... ++ .|++...++.++++|.+|++..+-++.
T Consensus 114 ~--l~a~d~~tG~~~W~~~--~~~~~~--~~p~~~--~~-~v~v~~~~g~l~~~d~~tG~~~W~~~~ 171 (376)
T 3q7m_A 114 Q--VYALNTSDGTVAWQTK--VAGEAL--SRPVVS--DG-LVLIHTSNGQLQALNEADGAVKWTVNL 171 (376)
T ss_dssp E--EEEEETTTCCEEEEEE--CSSCCC--SCCEEE--TT-EEEEECTTSEEEEEETTTCCEEEEEEC
T ss_pred E--EEEEECCCCCEEEEEe--CCCceE--cCCEEE--CC-EEEEEcCCCeEEEEECCCCcEEEEEeC
Confidence 2 4445533234557552 222111 233322 34 888888778899999999986655343
|
| >3u4y_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomi CS, MCSG; 2.99A {Desulfotomaculum acetoxidans} | Back alignment and structure |
|---|
Probab=94.16 E-value=2.5 Score=36.36 Aligned_cols=183 Identities=9% Similarity=0.038 Sum_probs=95.7
Q ss_pred CCccEEEEEeccccceeecCCcCCCCCCCCcceEEEeeecCCCCeEEEEEEEEcCCCCccEEEEEEecCCcE--EEccCC
Q 017748 115 SRRNIMLLLNPLTKRHRVLPTFYRDLSRCVPSLEGFGFDVGSGDFKLVKILAFGKPMNYTEVAVFSLRVNSW--RRIQDF 192 (366)
Q Consensus 115 ~~~~~~~V~NP~t~~~~~LP~~~~~~~~~~~~~~~lg~d~~~~~ykvv~~~~~~~~~~~~~~~vyss~t~~W--~~~~~~ 192 (366)
....+. ++|+.|++....-..+ .... ++.+++... +-++... ....+.+++..++.- +.+..-
T Consensus 18 ~~~~v~-~~d~~~~~~~~~~~~~------~~~~-~~~~s~dg~-~l~~~~~------~~~~i~~~d~~~~~~~~~~~~~~ 82 (331)
T 3u4y_A 18 HLRRIS-FFSTDTLEILNQITLG------YDFV-DTAITSDCS-NVVVTSD------FCQTLVQIETQLEPPKVVAIQEG 82 (331)
T ss_dssp GGTEEE-EEETTTCCEEEEEECC------CCEE-EEEECSSSC-EEEEEES------TTCEEEEEECSSSSCEEEEEEEC
T ss_pred CCCeEE-EEeCcccceeeeEEcc------CCcc-eEEEcCCCC-EEEEEeC------CCCeEEEEECCCCceeEEecccC
Confidence 455677 9999998875432221 1122 667766533 3222211 133788888887653 222110
Q ss_pred CcceecCCcceE--ECCcEEEEEeeCCCCCCCcEEEEEECCCceeee-eCCCCccCCCCceEEEEEE-CCe-EEEEEeec
Q 017748 193 PYFWVTGTCSVF--VNGALHWTAALNQDADRNDIIIAFDLKSEEFYQ-VPLPPIVGIEGYYILLEAL-GGC-LCLLCKFD 267 (366)
Q Consensus 193 ~~~~~~~~~~v~--~~G~lYw~~~~~~~~~~~~~i~~fD~~~~~~~~-i~lP~~~~~~~~~~~l~~~-~g~-L~l~~~~~ 267 (366)
. ....++. -+|...+....... ...|..+|+++.+... ++.+... ..+... +|+ |++.....
T Consensus 83 ~----~~~~~~~~s~dg~~l~~~~~~~~---~~~i~v~d~~~~~~~~~~~~~~~~------~~~~~spdg~~l~~~~~~~ 149 (331)
T 3u4y_A 83 Q----SSMADVDITPDDQFAVTVTGLNH---PFNMQSYSFLKNKFISTIPIPYDA------VGIAISPNGNGLILIDRSS 149 (331)
T ss_dssp S----SCCCCEEECTTSSEEEECCCSSS---SCEEEEEETTTTEEEEEEECCTTE------EEEEECTTSSCEEEEEETT
T ss_pred C----CCccceEECCCCCEEEEecCCCC---cccEEEEECCCCCeEEEEECCCCc------cceEECCCCCEEEEEecCC
Confidence 0 1111122 24553333332211 1279999998876533 3332221 233333 454 66655543
Q ss_pred CCCCCCc-EEEEEeccCCCCCceEE-EEEeccCCCceeeEEEEecCCcEEEEEee-CCeEEEEeCCCCeE
Q 017748 268 DDDDDRP-WDLWVMKEYGVNDSWTK-LATLLNVGGGNVKPLVYSRSEDKVLLHAV-RGDLCWYDLERHRV 334 (366)
Q Consensus 268 ~~~~~~~-l~iW~l~~~~~~~~W~~-~~~i~~~~~~~~~~~~~~~~g~~i~~~~~-~~~~~~yd~~t~~~ 334 (366)
. . +.+|.++..+. .... ...+..... ..-+.+.++|+.+++... ++.+..||+++++.
T Consensus 150 ~-----~~i~~~~~~~~g~--~~~~~~~~~~~~~~--~~~~~~spdg~~l~v~~~~~~~v~v~d~~~~~~ 210 (331)
T 3u4y_A 150 A-----NTVRRFKIDADGV--LFDTGQEFISGGTR--PFNITFTPDGNFAFVANLIGNSIGILETQNPEN 210 (331)
T ss_dssp T-----TEEEEEEECTTCC--EEEEEEEEECSSSS--EEEEEECTTSSEEEEEETTTTEEEEEECSSTTS
T ss_pred C-----ceEEEEEECCCCc--EeecCCccccCCCC--ccceEECCCCCEEEEEeCCCCeEEEEECCCCcc
Confidence 3 6 99999986431 1111 122322221 445667788866777654 56799999998885
|
| >2z2n_A Virginiamycin B lyase; seven-bladed beta-propeller, antibiotic resistance, E mechanism, virginiamycin B hydrolase streptogramin; HET: MSE; 1.65A {Staphylococcus aureus} PDB: 2z2o_A 2z2p_A* | Back alignment and structure |
|---|
Probab=94.07 E-value=2.3 Score=35.74 Aligned_cols=188 Identities=9% Similarity=-0.017 Sum_probs=93.6
Q ss_pred eceeEEeec-CCccEEEEEeccccceeecCCcCCCCCCCCcceEEEeeecCCCCeEEEEEEEEcCCCCccEEEEEEecCC
Q 017748 106 CNGLLALED-SRRNIMLLLNPLTKRHRVLPTFYRDLSRCVPSLEGFGFDVGSGDFKLVKILAFGKPMNYTEVAVFSLRVN 184 (366)
Q Consensus 106 ~~Gll~~~~-~~~~~~~V~NP~t~~~~~LP~~~~~~~~~~~~~~~lg~d~~~~~ykvv~~~~~~~~~~~~~~~vyss~t~ 184 (366)
.+|.+.+.. ....++ ++|| +++...+..+.. .....++.+|+.. ++.... .....+.+|+. ++
T Consensus 108 ~~g~l~v~~~~~~~i~-~~d~-~g~~~~~~~~~~-----~~~~~~i~~~~~g---~l~v~~-----~~~~~i~~~~~-~g 171 (299)
T 2z2n_A 108 PNGDIWFTEMNGNRIG-RITD-DGKIREYELPNK-----GSYPSFITLGSDN---ALWFTE-----NQNNAIGRITE-SG 171 (299)
T ss_dssp TTSCEEEEETTTTEEE-EECT-TCCEEEEECSST-----TCCEEEEEECTTS---CEEEEE-----TTTTEEEEECT-TC
T ss_pred CCCCEEEEecCCceEE-EECC-CCCEEEecCCCC-----CCCCceEEEcCCC---CEEEEe-----CCCCEEEEEcC-CC
Confidence 456665544 456688 9999 776665432211 1234566666542 222211 11345677777 66
Q ss_pred cEEEccCCCcceecCCcceEE--CCcEEEEEeeCCCCCCCcEEEEEECCCceeeeeCCCCccCCCCceEEEEEE-CCeEE
Q 017748 185 SWRRIQDFPYFWVTGTCSVFV--NGALHWTAALNQDADRNDIIIAFDLKSEEFYQVPLPPIVGIEGYYILLEAL-GGCLC 261 (366)
Q Consensus 185 ~W~~~~~~~~~~~~~~~~v~~--~G~lYw~~~~~~~~~~~~~i~~fD~~~~~~~~i~lP~~~~~~~~~~~l~~~-~g~L~ 261 (366)
........ ... ....++.+ +|.+|+..... ..|..||+ +.++..+.+|... .....+... +|.|+
T Consensus 172 ~~~~~~~~-~~~-~~~~~i~~~~~g~l~v~~~~~------~~i~~~~~-~g~~~~~~~~~~~---~~~~~i~~~~~g~l~ 239 (299)
T 2z2n_A 172 DITEFKIP-TPA-SGPVGITKGNDDALWFVEIIG------NKIGRITT-SGEITEFKIPTPN---ARPHAITAGAGIDLW 239 (299)
T ss_dssp CEEEEECS-STT-CCEEEEEECTTSSEEEEETTT------TEEEEECT-TCCEEEEECSSTT---CCEEEEEECSTTCEE
T ss_pred cEEEeeCC-CCC-CcceeEEECCCCCEEEEccCC------ceEEEECC-CCcEEEEECCCCC---CCceeEEECCCCCEE
Confidence 66553211 100 11123444 47775544322 37999999 7777766666332 122234443 57888
Q ss_pred EEEeecCCCCCCcEEEEEeccCCCCCceEEEEEeccCCCceeeEEEEecCCcEEEEEeeCCeEEEEeCCCCeEE
Q 017748 262 LLCKFDDDDDDRPWDLWVMKEYGVNDSWTKLATLLNVGGGNVKPLVYSRSEDKVLLHAVRGDLCWYDLERHRVR 335 (366)
Q Consensus 262 l~~~~~~~~~~~~l~iW~l~~~~~~~~W~~~~~i~~~~~~~~~~~~~~~~g~~i~~~~~~~~~~~yd~~t~~~~ 335 (366)
+...... .+..|-. . ..- ....++. ......-+.+ .+| .+++....+.+..||+++++++
T Consensus 240 v~~~~~~-----~i~~~d~--~---g~~-~~~~~~~-~~~~~~~i~~-~~g-~l~v~~~~~~l~~~~~~~~~~~ 299 (299)
T 2z2n_A 240 FTEWGAN-----KIGRLTS--N---NII-EEYPIQI-KSAEPHGICF-DGE-TIWFAMECDKIGKLTLIKDNME 299 (299)
T ss_dssp EEETTTT-----EEEEEET--T---TEE-EEEECSS-SSCCEEEEEE-CSS-CEEEEETTTEEEEEEEC-----
T ss_pred EeccCCc-----eEEEECC--C---Cce-EEEeCCC-CCCccceEEe-cCC-CEEEEecCCcEEEEEcCcccCC
Confidence 7764332 4544433 1 111 1222221 1111233344 444 8888865667999999998764
|
| >4aez_A CDC20, WD repeat-containing protein SLP1; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe} | Back alignment and structure |
|---|
Probab=94.01 E-value=3.2 Score=37.07 Aligned_cols=196 Identities=12% Similarity=0.069 Sum_probs=103.9
Q ss_pred EeeeceeEEeecCCccEEEEEeccccceeecCCcCCCCCCCCcceEEEeeecCCCCeEEEEEEEEcCCCCccEEEEEEec
Q 017748 103 IGSCNGLLALEDSRRNIMLLLNPLTKRHRVLPTFYRDLSRCVPSLEGFGFDVGSGDFKLVKILAFGKPMNYTEVAVFSLR 182 (366)
Q Consensus 103 ~~s~~Gll~~~~~~~~~~~V~NP~t~~~~~LP~~~~~~~~~~~~~~~lg~d~~~~~ykvv~~~~~~~~~~~~~~~vyss~ 182 (366)
++.+++.++....+..+. |||..+++...+-.... ......+.+.+. +.+-+++. . ...+.+|+..
T Consensus 99 ~~~s~~~l~~~~~d~~v~-lw~~~~~~~~~~~~~~~-----~~~v~~v~~s~~-~~~l~~~~---~----dg~i~iwd~~ 164 (401)
T 4aez_A 99 LDWSNLNVVAVALERNVY-VWNADSGSVSALAETDE-----STYVASVKWSHD-GSFLSVGL---G----NGLVDIYDVE 164 (401)
T ss_dssp EEECTTSEEEEEETTEEE-EEETTTCCEEEEEECCT-----TCCEEEEEECTT-SSEEEEEE---T----TSCEEEEETT
T ss_pred EeecCCCEEEEECCCeEE-EeeCCCCcEeEeeecCC-----CCCEEEEEECCC-CCEEEEEC---C----CCeEEEEECc
Confidence 333334444344566788 99999988766543321 123455666663 33333221 1 3468889887
Q ss_pred CCcEE-EccCCCcceecCCcceEECCcEEEEEeeCCCCCCCcEEEEEECCCceeeeeCCCCccCCCCceEEEEEE-CCeE
Q 017748 183 VNSWR-RIQDFPYFWVTGTCSVFVNGALHWTAALNQDADRNDIIIAFDLKSEEFYQVPLPPIVGIEGYYILLEAL-GGCL 260 (366)
Q Consensus 183 t~~W~-~~~~~~~~~~~~~~~v~~~G~lYw~~~~~~~~~~~~~i~~fD~~~~~~~~i~lP~~~~~~~~~~~l~~~-~g~L 260 (366)
++.-. .+.... ..-..+..+|.+...+..+ ..|..+|+....-....+.... .....+... +|++
T Consensus 165 ~~~~~~~~~~~~----~~v~~~~~~~~~l~~~~~d------g~i~i~d~~~~~~~~~~~~~~~---~~v~~~~~~~~~~~ 231 (401)
T 4aez_A 165 SQTKLRTMAGHQ----ARVGCLSWNRHVLSSGSRS------GAIHHHDVRIANHQIGTLQGHS---SEVCGLAWRSDGLQ 231 (401)
T ss_dssp TCCEEEEECCCS----SCEEEEEEETTEEEEEETT------SEEEEEETTSSSCEEEEEECCS---SCEEEEEECTTSSE
T ss_pred CCeEEEEecCCC----CceEEEEECCCEEEEEcCC------CCEEEEecccCcceeeEEcCCC---CCeeEEEEcCCCCE
Confidence 76432 221111 1112344567655555444 3899999984332211111111 122233333 5666
Q ss_pred EEEEeecCCCCCCcEEEEEeccCCCCCceEEEEEeccCCCceeeEEEEecCCcEEEEEee---CCeEEEEeCCCCeEEEe
Q 017748 261 CLLCKFDDDDDDRPWDLWVMKEYGVNDSWTKLATLLNVGGGNVKPLVYSRSEDKVLLHAV---RGDLCWYDLERHRVRSI 337 (366)
Q Consensus 261 ~l~~~~~~~~~~~~l~iW~l~~~~~~~~W~~~~~i~~~~~~~~~~~~~~~~g~~i~~~~~---~~~~~~yd~~t~~~~~v 337 (366)
.+.+..+. .+.+|-+... ..+..+.... ....-+.+..+++.++.... ++.+..||+++++....
T Consensus 232 l~s~~~d~-----~v~iwd~~~~------~~~~~~~~~~-~~v~~~~~~p~~~~ll~~~~gs~d~~i~i~d~~~~~~~~~ 299 (401)
T 4aez_A 232 LASGGNDN-----VVQIWDARSS------IPKFTKTNHN-AAVKAVAWCPWQSNLLATGGGTMDKQIHFWNAATGARVNT 299 (401)
T ss_dssp EEEEETTS-----CEEEEETTCS------SEEEEECCCS-SCCCEEEECTTSTTEEEEECCTTTCEEEEEETTTCCEEEE
T ss_pred EEEEeCCC-----eEEEccCCCC------CccEEecCCc-ceEEEEEECCCCCCEEEEecCCCCCEEEEEECCCCCEEEE
Confidence 66655554 8999988752 1222332111 11445666666656666543 67799999998876544
|
| >3scy_A Hypothetical bacterial 6-phosphogluconolactonase; 7-bladed beta-propeller, structural genomics, joint center F structural genomics, JCSG; HET: MSE; 1.50A {Bacteroides fragilis} PDB: 3fgb_A | Back alignment and structure |
|---|
Probab=93.64 E-value=2.5 Score=37.03 Aligned_cols=119 Identities=12% Similarity=0.042 Sum_probs=66.7
Q ss_pred CCcEEEEEeeCCCCCCCcEEEEEECCCceeeee-CCCCccCCCCceEEEEEE-CCeEEEEEeec-CCCCCCcEEEEEecc
Q 017748 206 NGALHWTAALNQDADRNDIIIAFDLKSEEFYQV-PLPPIVGIEGYYILLEAL-GGCLCLLCKFD-DDDDDRPWDLWVMKE 282 (366)
Q Consensus 206 ~G~lYw~~~~~~~~~~~~~i~~fD~~~~~~~~i-~lP~~~~~~~~~~~l~~~-~g~L~l~~~~~-~~~~~~~l~iW~l~~ 282 (366)
+|...++..... ..|..||+.+.++..+ .++...........+... +|+..++.... .. .+.+|.++.
T Consensus 221 dg~~l~v~~~~~-----~~v~v~~~~~g~~~~~~~~~~~~~~~~~~~~i~~spdg~~l~v~~~~~~~----~i~v~~~~~ 291 (361)
T 3scy_A 221 DGKFAYLINEIG-----GTVIAFRYADGMLDEIQTVAADTVNAQGSGDIHLSPDGKYLYASNRLKAD----GVAIFKVDE 291 (361)
T ss_dssp TSSEEEEEETTT-----CEEEEEEEETTEEEEEEEEESCSSCCCCEEEEEECTTSSEEEEEECSSSC----EEEEEEECT
T ss_pred CCCEEEEEcCCC-----CeEEEEEecCCceEEeEEEecCCCCCCCcccEEECCCCCEEEEECCCCCC----EEEEEEEcC
Confidence 576444444322 3788899887766544 222111001112233333 56644444433 22 899999974
Q ss_pred CCCCCceEEEEEeccCCCceeeEEEEecCCcEEEEEee-CCeE--EEEeCCCCeEEEe
Q 017748 283 YGVNDSWTKLATLLNVGGGNVKPLVYSRSEDKVLLHAV-RGDL--CWYDLERHRVRSI 337 (366)
Q Consensus 283 ~~~~~~W~~~~~i~~~~~~~~~~~~~~~~g~~i~~~~~-~~~~--~~yd~~t~~~~~v 337 (366)
. .+.+..+..++.... ..-+++.++|+.|++... ++.+ +.+|+++++++.+
T Consensus 292 ~--~g~~~~~~~~~~g~~--~~~~~~spdg~~l~~~~~~~~~v~v~~~d~~~g~~~~~ 345 (361)
T 3scy_A 292 T--NGTLTKVGYQLTGIH--PRNFIITPNGKYLLVACRDTNVIQIFERDQATGLLTDI 345 (361)
T ss_dssp T--TCCEEEEEEEECSSC--CCEEEECTTSCEEEEEETTTTEEEEEEECTTTCCEEEC
T ss_pred C--CCcEEEeeEecCCCC--CceEEECCCCCEEEEEECCCCCEEEEEEECCCCcEeec
Confidence 2 245666666654222 445677788866777653 4444 4478889998887
|
| >1yfq_A Cell cycle arrest protein BUB3; WD repeat WD40 repeat beta transducin repeat all beta, signaling protein; 1.10A {Saccharomyces cerevisiae} SCOP: b.69.4.2 PDB: 1u4c_A 2i3s_A 2i3t_A | Back alignment and structure |
|---|
Probab=93.52 E-value=3.3 Score=35.61 Aligned_cols=197 Identities=9% Similarity=-0.069 Sum_probs=101.1
Q ss_pred eEEeecCCccEEEEEec-cccceeecCCcCCCCCCCCcceEEEeeecCCCCeEEEEEEEEcCCCCccEEEEEEecCC--c
Q 017748 109 LLALEDSRRNIMLLLNP-LTKRHRVLPTFYRDLSRCVPSLEGFGFDVGSGDFKLVKILAFGKPMNYTEVAVFSLRVN--S 185 (366)
Q Consensus 109 ll~~~~~~~~~~~V~NP-~t~~~~~LP~~~~~~~~~~~~~~~lg~d~~~~~ykvv~~~~~~~~~~~~~~~vyss~t~--~ 185 (366)
+++.......+. +||. .+++...+.... + ......+.+.+ +.+-+.+ .. ...+.+|+..+. .
T Consensus 71 ~l~~~~~dg~i~-~wd~~~~~~~~~~~~~~--~---~~~v~~l~~~~--~~~l~s~-~~------d~~i~iwd~~~~~~~ 135 (342)
T 1yfq_A 71 QIYVGTVQGEIL-KVDLIGSPSFQALTNNE--A---NLGICRICKYG--DDKLIAA-SW------DGLIEVIDPRNYGDG 135 (342)
T ss_dssp EEEEEETTSCEE-EECSSSSSSEEECBSCC--C---CSCEEEEEEET--TTEEEEE-ET------TSEEEEECHHHHTTB
T ss_pred EEEEEcCCCeEE-EEEeccCCceEeccccC--C---CCceEEEEeCC--CCEEEEE-cC------CCeEEEEcccccccc
Confidence 455555566788 9999 888876665421 1 12345667776 4433332 11 446777776540 0
Q ss_pred -----EEEccCCCcceecCCcceEECCcEEEEEeeCCCCCCCcEEEEEECCC-ce--eeeeCCCCccCCCCceEEEEEE-
Q 017748 186 -----WRRIQDFPYFWVTGTCSVFVNGALHWTAALNQDADRNDIIIAFDLKS-EE--FYQVPLPPIVGIEGYYILLEAL- 256 (366)
Q Consensus 186 -----W~~~~~~~~~~~~~~~~v~~~G~lYw~~~~~~~~~~~~~i~~fD~~~-~~--~~~i~lP~~~~~~~~~~~l~~~- 256 (366)
.+.+..+. ......++.+.+.-...+... ..|..+|+.+ .. ......+... ....+...
T Consensus 136 ~~~~~~~~~~~~~--~~~~v~~~~~~~~~l~~~~~d------~~i~i~d~~~~~~~~~~~~~~~~~~----~i~~i~~~~ 203 (342)
T 1yfq_A 136 VIAVKNLNSNNTK--VKNKIFTMDTNSSRLIVGMNN------SQVQWFRLPLCEDDNGTIEESGLKY----QIRDVALLP 203 (342)
T ss_dssp CEEEEESCSSSSS--SCCCEEEEEECSSEEEEEEST------TEEEEEESSCCTTCCCEEEECSCSS----CEEEEEECS
T ss_pred cccccCCeeeEEe--eCCceEEEEecCCcEEEEeCC------CeEEEEECCccccccceeeecCCCC----ceeEEEECC
Confidence 11111111 111112333333332333222 3799999987 33 3333322221 23334444
Q ss_pred -CCeEEEEEeecCCCCCCcEEEEEeccCCCCCceEEEEEeccCC--------CceeeEEEEecCCcEEEEEeeCCeEEEE
Q 017748 257 -GGCLCLLCKFDDDDDDRPWDLWVMKEYGVNDSWTKLATLLNVG--------GGNVKPLVYSRSEDKVLLHAVRGDLCWY 327 (366)
Q Consensus 257 -~g~L~l~~~~~~~~~~~~l~iW~l~~~~~~~~W~~~~~i~~~~--------~~~~~~~~~~~~g~~i~~~~~~~~~~~y 327 (366)
+|++.++...++ .+.+|.++..+..........+.... .....-+++..++..|+....++.+..|
T Consensus 204 ~~~~~l~~~~~dg-----~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~vw 278 (342)
T 1yfq_A 204 KEQEGYACSSIDG-----RVAVEFFDDQGDDYNSSKRFAFRCHRLNLKDTNLAYPVNSIEFSPRHKFLYTAGSDGIISCW 278 (342)
T ss_dssp GGGCEEEEEETTS-----EEEEEECCTTCCSTTCTTCEEEECCCCCTTCCSSCCCEEEEEECTTTCCEEEEETTSCEEEE
T ss_pred CCCCEEEEEecCC-----cEEEEEEcCCCcccccccceeeecccccccccccceeEEEEEEcCCCCEEEEecCCceEEEE
Confidence 466666666554 89999998742111111222222110 0014445667777566666767789999
Q ss_pred eCCCCeEEEe
Q 017748 328 DLERHRVRSI 337 (366)
Q Consensus 328 d~~t~~~~~v 337 (366)
|+++++....
T Consensus 279 d~~~~~~~~~ 288 (342)
T 1yfq_A 279 NLQTRKKIKN 288 (342)
T ss_dssp ETTTTEEEEE
T ss_pred cCccHhHhhh
Confidence 9999886443
|
| >3hfq_A Uncharacterized protein LP_2219; Q88V64_lacpl, NESG, LPR118, structural genomics, PSI-2, protein structure initiative; 1.96A {Lactobacillus plantarum} | Back alignment and structure |
|---|
Probab=92.91 E-value=4.3 Score=35.20 Aligned_cols=116 Identities=7% Similarity=0.023 Sum_probs=64.4
Q ss_pred CCcEEEEEeeCCCCCCCcEEEEEECCCceeeeeCC-CCccCCCCceEEEEEE-CCe-EEEEEeecCCCCCCcEEEEEecc
Q 017748 206 NGALHWTAALNQDADRNDIIIAFDLKSEEFYQVPL-PPIVGIEGYYILLEAL-GGC-LCLLCKFDDDDDDRPWDLWVMKE 282 (366)
Q Consensus 206 ~G~lYw~~~~~~~~~~~~~i~~fD~~~~~~~~i~l-P~~~~~~~~~~~l~~~-~g~-L~l~~~~~~~~~~~~l~iW~l~~ 282 (366)
+|.+|........ ..|..||+.+++...+.. +... .....++.. +|+ |+++..... .+.+|.++.
T Consensus 50 dg~l~~~~~~~~~----~~v~~~~~~~g~~~~~~~~~~~~---~~p~~~a~spdg~~l~~~~~~~~-----~v~v~~~~~ 117 (347)
T 3hfq_A 50 KDCLYSVDKEDDE----GGIAAWQIDGQTAHKLNTVVAPG---TPPAYVAVDEARQLVYSANYHKG-----TAEVMKIAA 117 (347)
T ss_dssp TCEEEEEEEETTE----EEEEEEEEETTEEEEEEEEEEES---CCCSEEEEETTTTEEEEEETTTT-----EEEEEEECT
T ss_pred CCeEEEEEecCCC----ceEEEEEecCCcEEEeeeeecCC---CCCEEEEECCCCCEEEEEeCCCC-----EEEEEEeCC
Confidence 6887777764211 379999998777655522 2111 011223433 465 444433333 899999975
Q ss_pred CCCCCceEEEEEeccCCC--------ceeeEEEEecCCcEEEEEee-CCeEEEEeCC-CCeEEEe
Q 017748 283 YGVNDSWTKLATLLNVGG--------GNVKPLVYSRSEDKVLLHAV-RGDLCWYDLE-RHRVRSI 337 (366)
Q Consensus 283 ~~~~~~W~~~~~i~~~~~--------~~~~~~~~~~~g~~i~~~~~-~~~~~~yd~~-t~~~~~v 337 (366)
.+ ....+..+..... ....-+++.++|. +++... ++.+..||++ ++++..+
T Consensus 118 ~g---~~~~~~~~~~~~~~p~~~~~~~~~~~~~~spdg~-l~v~~~~~~~v~~~~~~~~g~~~~~ 178 (347)
T 3hfq_A 118 DG---ALTLTDTVQHSGHGPRPEQDGSHIHYTDLTPDNR-LAVIDLGSDKVYVYNVSDAGQLSEQ 178 (347)
T ss_dssp TS---CEEEEEEEECCCCCSSTTCSSCCEEEEEECTTSC-EEEEETTTTEEEEEEECTTSCEEEE
T ss_pred CC---CeeecceeecCCCCCCccccCCCceEEEECCCCc-EEEEeCCCCEEEEEEECCCCcEEEe
Confidence 32 3444444433210 0133366778885 665543 4569999998 6766654
|
| >1gxr_A ESG1, transducin-like enhancer protein 1; transcriptional CO-repressor, WD40, transcription repressor, WD repeat; 1.65A {Homo sapiens} SCOP: b.69.4.1 PDB: 2ce8_A 2ce9_A | Back alignment and structure |
|---|
Probab=92.56 E-value=4.5 Score=34.51 Aligned_cols=187 Identities=11% Similarity=0.080 Sum_probs=97.6
Q ss_pred eEEeecCCccEEEEEeccccceeecCCcCCCCCCCCcceEEEeeecCCCCeEEEEEEEEcCCCCccEEEEEEecCCcEEE
Q 017748 109 LLALEDSRRNIMLLLNPLTKRHRVLPTFYRDLSRCVPSLEGFGFDVGSGDFKLVKILAFGKPMNYTEVAVFSLRVNSWRR 188 (366)
Q Consensus 109 ll~~~~~~~~~~~V~NP~t~~~~~LP~~~~~~~~~~~~~~~lg~d~~~~~ykvv~~~~~~~~~~~~~~~vyss~t~~W~~ 188 (366)
+++.......+. ++|..+++.......... ......+.+.+. +.+-++. .. ...+.+|+..++.-..
T Consensus 111 ~l~~~~~d~~i~-~~d~~~~~~~~~~~~~~~----~~~i~~~~~~~~-~~~l~~~-~~------dg~v~~~d~~~~~~~~ 177 (337)
T 1gxr_A 111 TLIVGGEASTLS-IWDLAAPTPRIKAELTSS----APACYALAISPD-SKVCFSC-CS------DGNIAVWDLHNQTLVR 177 (337)
T ss_dssp EEEEEESSSEEE-EEECCCC--EEEEEEECS----SSCEEEEEECTT-SSEEEEE-ET------TSCEEEEETTTTEEEE
T ss_pred EEEEEcCCCcEE-EEECCCCCcceeeecccC----CCceEEEEECCC-CCEEEEE-eC------CCcEEEEeCCCCceee
Confidence 344444556677 899888764332222111 113445666653 2332222 11 3458888887765432
Q ss_pred -ccCCCcceecCCcceEE--CCcEEEEEeeCCCCCCCcEEEEEECCCceeee-eCCCCccCCCCceEEEEEE-CCeEEEE
Q 017748 189 -IQDFPYFWVTGTCSVFV--NGALHWTAALNQDADRNDIIIAFDLKSEEFYQ-VPLPPIVGIEGYYILLEAL-GGCLCLL 263 (366)
Q Consensus 189 -~~~~~~~~~~~~~~v~~--~G~lYw~~~~~~~~~~~~~i~~fD~~~~~~~~-i~lP~~~~~~~~~~~l~~~-~g~L~l~ 263 (366)
+...... -..+.+ +|.....+... ..|..+|+.+.+... +..+.. ...+... +|+..++
T Consensus 178 ~~~~~~~~----i~~~~~~~~~~~l~~~~~d------g~i~~~d~~~~~~~~~~~~~~~------v~~~~~s~~~~~l~~ 241 (337)
T 1gxr_A 178 QFQGHTDG----ASCIDISNDGTKLWTGGLD------NTVRSWDLREGRQLQQHDFTSQ------IFSLGYCPTGEWLAV 241 (337)
T ss_dssp EECCCSSC----EEEEEECTTSSEEEEEETT------SEEEEEETTTTEEEEEEECSSC------EEEEEECTTSSEEEE
T ss_pred eeecccCc----eEEEEECCCCCEEEEEecC------CcEEEEECCCCceEeeecCCCc------eEEEEECCCCCEEEE
Confidence 2111111 112222 55555555433 379999998765433 233222 2223333 4666655
Q ss_pred EeecCCCCCCcEEEEEeccCCCCCceEEEEEeccCCCceeeEEEEecCCcEEEEEeeCCeEEEEeCCCCeEEEe
Q 017748 264 CKFDDDDDDRPWDLWVMKEYGVNDSWTKLATLLNVGGGNVKPLVYSRSEDKVLLHAVRGDLCWYDLERHRVRSI 337 (366)
Q Consensus 264 ~~~~~~~~~~~l~iW~l~~~~~~~~W~~~~~i~~~~~~~~~~~~~~~~g~~i~~~~~~~~~~~yd~~t~~~~~v 337 (366)
...+. .+.+|.++... ...+.... ....-+.+..++..++....++.+..||+++++....
T Consensus 242 ~~~~~-----~i~~~~~~~~~-------~~~~~~~~-~~v~~~~~~~~~~~l~~~~~dg~i~~~~~~~~~~~~~ 302 (337)
T 1gxr_A 242 GMESS-----NVEVLHVNKPD-------KYQLHLHE-SCVLSLKFAYCGKWFVSTGKDNLLNAWRTPYGASIFQ 302 (337)
T ss_dssp EETTS-----CEEEEETTSSC-------EEEECCCS-SCEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEE
T ss_pred EcCCC-----cEEEEECCCCC-------eEEEcCCc-cceeEEEECCCCCEEEEecCCCcEEEEECCCCeEEEE
Confidence 55444 79999887631 11221111 1144566677776666667778899999999887644
|
| >3g4e_A Regucalcin; six bladed beta-propeller, gluconolcatonase, organophosphate hydrolase, calcium bound, alternative splicing, cytoplasm, phosphoprotein; 1.42A {Homo sapiens} PDB: 3g4h_B | Back alignment and structure |
|---|
Probab=92.47 E-value=4.5 Score=34.42 Aligned_cols=199 Identities=9% Similarity=-0.005 Sum_probs=98.2
Q ss_pred eEEeecCCccEEEEEeccccceeecCCcCCCCCCCCcceEEEeeecCCCCeEEEEEEEEcCCCCccEEEEEEecCCcEEE
Q 017748 109 LLALEDSRRNIMLLLNPLTKRHRVLPTFYRDLSRCVPSLEGFGFDVGSGDFKLVKILAFGKPMNYTEVAVFSLRVNSWRR 188 (366)
Q Consensus 109 ll~~~~~~~~~~~V~NP~t~~~~~LP~~~~~~~~~~~~~~~lg~d~~~~~ykvv~~~~~~~~~~~~~~~vyss~t~~W~~ 188 (366)
|+.......+++ .+||.+++...+..+. ...++.+++... -++. . ...+.+|+..++..+.
T Consensus 27 l~~~d~~~~~i~-~~d~~~~~~~~~~~~~--------~~~~i~~~~dG~--l~v~--~------~~~l~~~d~~~g~~~~ 87 (297)
T 3g4e_A 27 LLFVDIPAKKVC-RWDSFTKQVQRVTMDA--------PVSSVALRQSGG--YVAT--I------GTKFCALNWKEQSAVV 87 (297)
T ss_dssp EEEEETTTTEEE-EEETTTCCEEEEECSS--------CEEEEEEBTTSS--EEEE--E------TTEEEEEETTTTEEEE
T ss_pred EEEEECCCCEEE-EEECCCCcEEEEeCCC--------ceEEEEECCCCC--EEEE--E------CCeEEEEECCCCcEEE
Confidence 333333556788 9999998765543221 234566776533 2222 1 3468889998888876
Q ss_pred ccCCCccee-cCCcceEE--CCcEEEEEeeCCC-----CCCCcEEEEEECCCceeeeeCCCCccCCCCceEEEEEE-CC-
Q 017748 189 IQDFPYFWV-TGTCSVFV--NGALHWTAALNQD-----ADRNDIIIAFDLKSEEFYQVPLPPIVGIEGYYILLEAL-GG- 258 (366)
Q Consensus 189 ~~~~~~~~~-~~~~~v~~--~G~lYw~~~~~~~-----~~~~~~i~~fD~~~~~~~~i~lP~~~~~~~~~~~l~~~-~g- 258 (366)
+...+.... .....+.+ +|.+|+-...... ......|..+|.... ...+. ... ...--++.. +|
T Consensus 88 ~~~~~~~~~~~~~~di~~d~dG~l~~~~~~~~~~~~~~~~~~~~l~~~d~~g~-~~~~~--~~~---~~pngi~~spdg~ 161 (297)
T 3g4e_A 88 LATVDNDKKNNRFNDGKVDPAGRYFAGTMAEETAPAVLERHQGALYSLFPDHH-VKKYF--DQV---DISNGLDWSLDHK 161 (297)
T ss_dssp EEECCTTCSSEEEEEEEECTTSCEEEEEEECCSBTTBCCTTCEEEEEECTTSC-EEEEE--EEE---SBEEEEEECTTSC
T ss_pred EEecCCCCCCCCCCCEEECCCCCEEEecCCcccccccccCCCcEEEEEECCCC-EEEEe--ecc---ccccceEEcCCCC
Confidence 643321111 11112333 5886654433210 012247888988642 22221 011 011123333 45
Q ss_pred eEEEEEeecCCCCCCcEEEEEeccCCCCCceEEEEEe-ccCCCceeeEE--EEecCCcEEEEEee-CCeEEEEeCCCCeE
Q 017748 259 CLCLLCKFDDDDDDRPWDLWVMKEYGVNDSWTKLATL-LNVGGGNVKPL--VYSRSEDKVLLHAV-RGDLCWYDLERHRV 334 (366)
Q Consensus 259 ~L~l~~~~~~~~~~~~l~iW~l~~~~~~~~W~~~~~i-~~~~~~~~~~~--~~~~~g~~i~~~~~-~~~~~~yd~~t~~~ 334 (366)
.||++..... .+.+|.++.. .........+ .... ....|- ++..+| .|++... ++++..||+++++.
T Consensus 162 ~lyv~~~~~~-----~i~~~~~d~~--~G~~~~~~~~~~~~~-~~~~p~g~~~d~~G-~lwva~~~~~~v~~~d~~tG~~ 232 (297)
T 3g4e_A 162 IFYYIDSLSY-----SVDAFDYDLQ--TGQISNRRSVYKLEK-EEQIPDGMCIDAEG-KLWVACYNGGRVIRLDPVTGKR 232 (297)
T ss_dssp EEEEEEGGGT-----EEEEEEECTT--TCCEEEEEEEEECCG-GGCEEEEEEEBTTS-CEEEEEETTTEEEEECTTTCCE
T ss_pred EEEEecCCCC-----cEEEEeccCC--CCcccCcEEEEECCC-CCCCCCeeEECCCC-CEEEEEcCCCEEEEEcCCCceE
Confidence 4666655433 5666555421 1223222211 1111 012344 444566 7777764 45699999998775
Q ss_pred EEeeeec
Q 017748 335 RSIVEID 341 (366)
Q Consensus 335 ~~v~~~~ 341 (366)
.....+.
T Consensus 233 ~~~i~~p 239 (297)
T 3g4e_A 233 LQTVKLP 239 (297)
T ss_dssp EEEEECS
T ss_pred EEEEECC
Confidence 4432655
|
| >3bws_A Protein LP49; two-domain, immunoglobulin-like, 7-bladed beta propeller, unknown function; 1.99A {Leptospira interrogans} | Back alignment and structure |
|---|
Probab=92.44 E-value=3 Score=37.42 Aligned_cols=114 Identities=16% Similarity=0.087 Sum_probs=64.7
Q ss_pred CCcEEEEEeeCCCCCCCcEEEEEECCCceeeee-CCCCccCCCCceEEEEEE-CCeEEEEEeecCCCCCCcEEEEEeccC
Q 017748 206 NGALHWTAALNQDADRNDIIIAFDLKSEEFYQV-PLPPIVGIEGYYILLEAL-GGCLCLLCKFDDDDDDRPWDLWVMKEY 283 (366)
Q Consensus 206 ~G~lYw~~~~~~~~~~~~~i~~fD~~~~~~~~i-~lP~~~~~~~~~~~l~~~-~g~L~l~~~~~~~~~~~~l~iW~l~~~ 283 (366)
+|.++..+..+ ..|..+|+.+.+.... +.+...........+... +|++++....+. .+.+|-++..
T Consensus 133 ~~~~~~~~~~~------~~i~~~d~~~g~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~s~~~d~-----~v~~~d~~~~ 201 (433)
T 3bws_A 133 NTRLAIPLLED------EGMDVLDINSGQTVRLSPPEKYKKKLGFVETISIPEHNELWVSQMQAN-----AVHVFDLKTL 201 (433)
T ss_dssp SSEEEEEBTTS------SSEEEEETTTCCEEEECCCHHHHTTCCEEEEEEEGGGTEEEEEEGGGT-----EEEEEETTTC
T ss_pred CCeEEEEeCCC------CeEEEEECCCCeEeeecCcccccccCCceeEEEEcCCCEEEEEECCCC-----EEEEEECCCc
Confidence 45555544333 2599999998766543 221111111122223332 577777666554 8999988652
Q ss_pred CCCCceEEEEEeccCCCceeeEEEEecCCcEEEEEe-eCCeEEEEeCCCCeEEEe
Q 017748 284 GVNDSWTKLATLLNVGGGNVKPLVYSRSEDKVLLHA-VRGDLCWYDLERHRVRSI 337 (366)
Q Consensus 284 ~~~~~W~~~~~i~~~~~~~~~~~~~~~~g~~i~~~~-~~~~~~~yd~~t~~~~~v 337 (366)
..+..+.... ....-+++..+++.+++.. .++.+..||+++++....
T Consensus 202 ------~~~~~~~~~~-~~~~~~~~~~~~~~l~~~~~~~~~i~~~d~~~~~~~~~ 249 (433)
T 3bws_A 202 ------AYKATVDLTG-KWSKILLYDPIRDLVYCSNWISEDISVIDRKTKLEIRK 249 (433)
T ss_dssp ------CEEEEEECSS-SSEEEEEEETTTTEEEEEETTTTEEEEEETTTTEEEEE
T ss_pred ------eEEEEEcCCC-CCeeEEEEcCCCCEEEEEecCCCcEEEEECCCCcEEEE
Confidence 1223333211 1144566777786676665 466799999999887554
|
| >3dsm_A Uncharacterized protein bacuni_02894; seven_blated beta propeller, structural genomics, PSI-2, Pro structure initiative; 1.90A {Bacteroides uniformis} | Back alignment and structure |
|---|
Probab=92.42 E-value=5 Score=34.81 Aligned_cols=195 Identities=11% Similarity=0.008 Sum_probs=99.3
Q ss_pred eceeEEee-cCCccEEEEEeccccce-eecCCcCCCCCCCCcceEEEeeecCCCCeEEEEEEEEcCCCCccEEEEEEecC
Q 017748 106 CNGLLALE-DSRRNIMLLLNPLTKRH-RVLPTFYRDLSRCVPSLEGFGFDVGSGDFKLVKILAFGKPMNYTEVAVFSLRV 183 (366)
Q Consensus 106 ~~Gll~~~-~~~~~~~~V~NP~t~~~-~~LP~~~~~~~~~~~~~~~lg~d~~~~~ykvv~~~~~~~~~~~~~~~vyss~t 183 (366)
.++.+.+. .....+. |+|+.|++. ..+|... ...++.+++. . ++..... ....+.+++..+
T Consensus 52 ~~~~lyv~~~~~~~v~-viD~~t~~~~~~i~~~~--------~p~~i~~~~~--g-~lyv~~~-----~~~~v~~iD~~t 114 (328)
T 3dsm_A 52 RDGIGWIVVNNSHVIF-AIDINTFKEVGRITGFT--------SPRYIHFLSD--E-KAYVTQI-----WDYRIFIINPKT 114 (328)
T ss_dssp ETTEEEEEEGGGTEEE-EEETTTCCEEEEEECCS--------SEEEEEEEET--T-EEEEEEB-----SCSEEEEEETTT
T ss_pred ECCEEEEEEcCCCEEE-EEECcccEEEEEcCCCC--------CCcEEEEeCC--C-eEEEEEC-----CCCeEEEEECCC
Confidence 34544333 3456688 999999887 5564321 2334555443 3 4444321 145688899887
Q ss_pred CcEEE-ccCCCcce--ecCCcce-EECCcEEEEEeeCCCCCCCcEEEEEECCCceee-eeCCCCccCCCCceEEEEE-EC
Q 017748 184 NSWRR-IQDFPYFW--VTGTCSV-FVNGALHWTAALNQDADRNDIIIAFDLKSEEFY-QVPLPPIVGIEGYYILLEA-LG 257 (366)
Q Consensus 184 ~~W~~-~~~~~~~~--~~~~~~v-~~~G~lYw~~~~~~~~~~~~~i~~fD~~~~~~~-~i~lP~~~~~~~~~~~l~~-~~ 257 (366)
++-.. ++ ..... .....++ .-+|.+|....... ..|..+|+++.+.. .++..... .. +.. -+
T Consensus 115 ~~~~~~i~-~g~~~~~~~~p~~i~~~~~~lyv~~~~~~-----~~v~viD~~t~~~~~~i~~g~~p----~~--i~~~~d 182 (328)
T 3dsm_A 115 YEITGYIE-CPDMDMESGSTEQMVQYGKYVYVNCWSYQ-----NRILKIDTETDKVVDELTIGIQP----TS--LVMDKY 182 (328)
T ss_dssp TEEEEEEE-CTTCCTTTCBCCCEEEETTEEEEEECTTC-----CEEEEEETTTTEEEEEEECSSCB----CC--CEECTT
T ss_pred CeEEEEEE-cCCccccCCCcceEEEECCEEEEEcCCCC-----CEEEEEECCCCeEEEEEEcCCCc----cc--eEEcCC
Confidence 65332 21 11100 0011133 34566665543111 37999999987763 34443322 11 222 25
Q ss_pred CeEEEEEeecCCCCC---CcEEEEEeccCCCCCceEEEEEeccCCCceeeEEEEecCCcEEEEEeeCCeEEEEeCCCCeE
Q 017748 258 GCLCLLCKFDDDDDD---RPWDLWVMKEYGVNDSWTKLATLLNVGGGNVKPLVYSRSEDKVLLHAVRGDLCWYDLERHRV 334 (366)
Q Consensus 258 g~L~l~~~~~~~~~~---~~l~iW~l~~~~~~~~W~~~~~i~~~~~~~~~~~~~~~~g~~i~~~~~~~~~~~yd~~t~~~ 334 (366)
|+++++........+ ..-.|++++.. ..+-.+...++.... ..-+++..+++.+++... .++.+|++++++
T Consensus 183 G~l~v~~~~~~~~~~~~~~~~~v~~id~~--t~~v~~~~~~~~g~~--p~~la~~~d~~~lyv~~~--~v~~~d~~t~~~ 256 (328)
T 3dsm_A 183 NKMWTITDGGYEGSPYGYEAPSLYRIDAE--TFTVEKQFKFKLGDW--PSEVQLNGTRDTLYWINN--DIWRMPVEADRV 256 (328)
T ss_dssp SEEEEEBCCBCTTCSSCBCCCEEEEEETT--TTEEEEEEECCTTCC--CEEEEECTTSCEEEEESS--SEEEEETTCSSC
T ss_pred CCEEEEECCCccCCccccCCceEEEEECC--CCeEEEEEecCCCCC--ceeEEEecCCCEEEEEcc--EEEEEECCCCce
Confidence 888877654311000 01245555542 122332223322211 444566666766766544 699999999886
Q ss_pred E
Q 017748 335 R 335 (366)
Q Consensus 335 ~ 335 (366)
.
T Consensus 257 ~ 257 (328)
T 3dsm_A 257 P 257 (328)
T ss_dssp C
T ss_pred e
Confidence 4
|
| >3sjl_D Methylamine dehydrogenase heavy chain; MAUG, C-heme, quinone cofactor, oxidoreductase-electron transport complex; HET: 0AF HEC MES; 1.63A {Paracoccus denitrificans} PDB: 2gc7_A* 2j55_H* 2j56_H* 2j57_G* 3l4m_D* 3l4o_D* 3orv_D* 3pxs_D* 3pxt_D* 3rlm_D* 2gc4_A* 3rn0_D* 3rn1_D* 3rmz_D* 3svw_D* 3sws_D* 3sxt_D* 3pxw_D* 3sle_D* 1mg2_A* ... | Back alignment and structure |
|---|
Probab=92.34 E-value=2.2 Score=38.45 Aligned_cols=124 Identities=17% Similarity=0.067 Sum_probs=71.3
Q ss_pred CCcEEEEEeeCCCCCCCcEEEEEECCCceeeee---C-C------CCccCCCCceEEEEEECCeEEEEEeecCCC--CCC
Q 017748 206 NGALHWTAALNQDADRNDIIIAFDLKSEEFYQV---P-L------PPIVGIEGYYILLEALGGCLCLLCKFDDDD--DDR 273 (366)
Q Consensus 206 ~G~lYw~~~~~~~~~~~~~i~~fD~~~~~~~~i---~-l------P~~~~~~~~~~~l~~~~g~L~l~~~~~~~~--~~~ 273 (366)
+|.++|.+..+ .+.++|+.++.-..+ . + +...........+..-+++||++....... ...
T Consensus 237 dG~~~~vs~~g-------~V~v~d~~~~~~~v~~~~~~~~~~~~~~g~~p~g~q~~a~~~~~~~lyV~~~~~~~~~hk~~ 309 (386)
T 3sjl_D 237 AGRLVWPTYTG-------KIHQIDLSSGDAKFLPAVEALTEAERADGWRPGGWQQVAYHRALDRIYLLVDQRDEWRHKTA 309 (386)
T ss_dssp TTEEEEEBTTS-------EEEEEECTTSSCEECCCEESSCHHHHHTTEEECSSSCEEEETTTTEEEEEEEECCTTCTTSC
T ss_pred CCcEEEEeCCC-------EEEEEECCCCcceeecceeccccccccccccCCCcceeeECCCCCeEEEEeccccccccCCC
Confidence 78899987754 799999987653322 1 1 110000001112211257888876532110 011
Q ss_pred cEEEEEeccCCCCCceEEEEEeccCCCceeeEEEEecCCcEEEEEee--CCeEEEEeCCCCeEEEeeeecC
Q 017748 274 PWDLWVMKEYGVNDSWTKLATLLNVGGGNVKPLVYSRSEDKVLLHAV--RGDLCWYDLERHRVRSIVEIDD 342 (366)
Q Consensus 274 ~l~iW~l~~~~~~~~W~~~~~i~~~~~~~~~~~~~~~~g~~i~~~~~--~~~~~~yd~~t~~~~~v~~~~~ 342 (366)
.=+||++|- .++..+.+++...- ..-+++..++...++..+ ++.+.+||..|++..+-....+
T Consensus 310 ~~~V~viD~----~t~kv~~~i~vg~~--~~~lavs~D~~~~ly~tn~~~~~VsViD~~t~k~~~~i~~~~ 374 (386)
T 3sjl_D 310 SRFVVVLDA----KTGERLAKFEMGHE--IDSINVSQDEKPLLYALSTGDKTLYIHDAESGEELRSVNQLG 374 (386)
T ss_dssp EEEEEEEET----TTCCEEEEEEEEEE--ECEEEECSSSSCEEEEEETTTTEEEEEETTTCCEEEEECCCC
T ss_pred CCEEEEEEC----CCCeEEEEEECCCC--cceEEECCCCCeEEEEEcCCCCeEEEEECCCCcEEEEecCCC
Confidence 468999997 44677777776421 334677788753444433 5579999999998764435555
|
| >1ri6_A Putative isomerase YBHE; 7-bladed propeller, enzyme, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.00A {Escherichia coli} SCOP: b.69.11.1 | Back alignment and structure |
|---|
Probab=92.30 E-value=4.9 Score=34.40 Aligned_cols=156 Identities=9% Similarity=0.058 Sum_probs=80.6
Q ss_pred ccEEEEEEecC-CcEEEcc--CCCcceecCCcceEE--CCcEEEEEeeCCCCCCCcEEEEEECC--Cceee---ee-CCC
Q 017748 173 YTEVAVFSLRV-NSWRRIQ--DFPYFWVTGTCSVFV--NGALHWTAALNQDADRNDIIIAFDLK--SEEFY---QV-PLP 241 (366)
Q Consensus 173 ~~~~~vyss~t-~~W~~~~--~~~~~~~~~~~~v~~--~G~lYw~~~~~~~~~~~~~i~~fD~~--~~~~~---~i-~lP 241 (366)
...+.+|+..+ +...... ............+.+ +|...+++.... ..+..+|+. +.++. .+ .+|
T Consensus 150 ~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pdg~~l~~~~~~~-----~~i~~~~~~~~~g~~~~~~~~~~~~ 224 (343)
T 1ri6_A 150 QDRICLFTVSDDGHLVAQDPAEVTTVEGAGPRHMVFHPNEQYAYCVNELN-----SSVDVWELKDPHGNIECVQTLDMMP 224 (343)
T ss_dssp GTEEEEEEECTTSCEEEEEEEEEECSTTCCEEEEEECTTSSEEEEEETTT-----TEEEEEESSCTTSCCEEEEEEECSC
T ss_pred CCEEEEEEecCCCceeeecccccccCCCCCcceEEECCCCCEEEEEeCCC-----CEEEEEEecCCCCcEEEEeeccccC
Confidence 34688898877 6665322 110000001112222 465333333221 378888884 34442 22 344
Q ss_pred CccCCCCceEEEEEE-CCeEEEEEeecCCCCCCcEEEEEeccCCCCCceEEEEEeccCCCceeeEEEEecCCcEEEEEee
Q 017748 242 PIVGIEGYYILLEAL-GGCLCLLCKFDDDDDDRPWDLWVMKEYGVNDSWTKLATLLNVGGGNVKPLVYSRSEDKVLLHAV 320 (366)
Q Consensus 242 ~~~~~~~~~~~l~~~-~g~L~l~~~~~~~~~~~~l~iW~l~~~~~~~~W~~~~~i~~~~~~~~~~~~~~~~g~~i~~~~~ 320 (366)
...........+... +|+..++...... .+.+|.++..+ .++..+..++.... ..-+++..+|+.+++...
T Consensus 225 ~~~~~~~~~~~i~~s~dg~~l~v~~~~~~----~i~v~d~~~~~--~~~~~~~~~~~~~~--~~~~~~s~dg~~l~~~~~ 296 (343)
T 1ri6_A 225 ENFSDTRWAADIHITPDGRHLYACDRTAS----LITVFSVSEDG--SVLSKEGFQPTETQ--PRGFNVDHSGKYLIAAGQ 296 (343)
T ss_dssp TTCCSCCCEEEEEECTTSSEEEEEETTTT----EEEEEEECTTS--CCEEEEEEEECSSS--CCCEEECTTSSEEEEECT
T ss_pred ccccccCCccceEECCCCCEEEEEecCCC----EEEEEEEcCCC--CceEEeeeecCCCc--cceEEECCCCCEEEEecC
Confidence 432111112233333 3543333332222 89999998532 34677766665332 444677778866777763
Q ss_pred -CCeEEEE--eCCCCeEEEeeeec
Q 017748 321 -RGDLCWY--DLERHRVRSIVEID 341 (366)
Q Consensus 321 -~~~~~~y--d~~t~~~~~v~~~~ 341 (366)
++.+..| |+++++++.+-+++
T Consensus 297 ~~~~v~v~~~d~~~g~~~~~~~~~ 320 (343)
T 1ri6_A 297 KSHHISVYEIVGEQGLLHEKGRYA 320 (343)
T ss_dssp TTCEEEEEEEETTTTEEEEEEEEE
T ss_pred CCCeEEEEEEcCCCceeeEccccc
Confidence 4566666 88899998874444
|
| >3v65_B Low-density lipoprotein receptor-related protein; laminin-G, beta-propeller, protein binding; 3.30A {Rattus norvegicus} | Back alignment and structure |
|---|
Probab=92.25 E-value=6.1 Score=35.37 Aligned_cols=190 Identities=12% Similarity=0.012 Sum_probs=94.7
Q ss_pred eceeEEeec-CCccEEEEEeccccceeecCCcCCCCCCCCcceEEEeeecCCCCeEEEEEEEEcCCCCccEEEEEEecCC
Q 017748 106 CNGLLALED-SRRNIMLLLNPLTKRHRVLPTFYRDLSRCVPSLEGFGFDVGSGDFKLVKILAFGKPMNYTEVAVFSLRVN 184 (366)
Q Consensus 106 ~~Gll~~~~-~~~~~~~V~NP~t~~~~~LP~~~~~~~~~~~~~~~lg~d~~~~~ykvv~~~~~~~~~~~~~~~vyss~t~ 184 (366)
.+|.|...+ ...++. .+++.++....+-..... ...++.+|+..+. +.... . ....+++++....
T Consensus 126 ~~~~ly~~D~~~~~I~-r~~~~g~~~~~~~~~~~~------~p~glavd~~~g~--lY~~d---~--~~~~I~~~~~dg~ 191 (386)
T 3v65_B 126 RRELVFWSDVTLDRIL-RANLNGSNVEEVVSTGLE------SPGGLAVDWVHDK--LYWTD---S--GTSRIEVANLDGA 191 (386)
T ss_dssp TTTEEEEEETTTTEEE-EEETTSCCEEEEECSSCS------CCCCEEEETTTTE--EEEEE---T--TTTEEEECBTTSC
T ss_pred CCCeEEEEeCCCCcEE-EEecCCCCcEEEEeCCCC------CccEEEEEeCCCe--EEEEc---C--CCCeEEEEeCCCC
Confidence 456665554 445677 888877665444222211 2235667765442 22211 1 1235566665443
Q ss_pred cEEEccCCCcceecCCcceEE---CCcEEEEEeeCCCCCCCcEEEEEECCCceeeeeCCCCccCCCCceEEEEE--ECCe
Q 017748 185 SWRRIQDFPYFWVTGTCSVFV---NGALHWTAALNQDADRNDIIIAFDLKSEEFYQVPLPPIVGIEGYYILLEA--LGGC 259 (366)
Q Consensus 185 ~W~~~~~~~~~~~~~~~~v~~---~G~lYw~~~~~~~~~~~~~i~~fD~~~~~~~~i~lP~~~~~~~~~~~l~~--~~g~ 259 (366)
.-+.+..-. . ....++.+ +|.+||..... ...|..+|+....-..+.- ... ...--|+. .+++
T Consensus 192 ~~~~l~~~~--l-~~P~giavdp~~g~ly~td~~~-----~~~I~r~~~dG~~~~~~~~-~~~---~~PnGlavd~~~~~ 259 (386)
T 3v65_B 192 HRKVLLWQS--L-EKPRAIALHPMEGTIYWTDWGN-----TPRIEASSMDGSGRRIIAD-THL---FWPNGLTIDYAGRR 259 (386)
T ss_dssp SCEEEECSS--C-SCEEEEEEETTTTEEEEEECSS-----SCEEEEEETTSCSCEEEEC-SSC---SCEEEEEEEGGGTE
T ss_pred ceEEeecCC--C-CCCcEEEEEcCCCeEEEeccCC-----CCEEEEEeCCCCCcEEEEE-CCC---CCeeeEEEeCCCCE
Confidence 322221100 0 11224444 58999976443 1379999997644333311 111 01222444 3789
Q ss_pred EEEEEeecCCCCCCcEEEEEeccCCCCCceEEEEEeccCCCceeeEEEEecCCcEEEEEee-CCeEEEEeCCCCeEE
Q 017748 260 LCLLCKFDDDDDDRPWDLWVMKEYGVNDSWTKLATLLNVGGGNVKPLVYSRSEDKVLLHAV-RGDLCWYDLERHRVR 335 (366)
Q Consensus 260 L~l~~~~~~~~~~~~l~iW~l~~~~~~~~W~~~~~i~~~~~~~~~~~~~~~~g~~i~~~~~-~~~~~~yd~~t~~~~ 335 (366)
||++..... .|+..+-.+.. +..+-...+ ..|.++.-.++.||+... ..++..+|..+++..
T Consensus 260 lY~aD~~~~-------~I~~~d~dG~~-----~~~~~~~~~--~~P~giav~~~~ly~td~~~~~V~~~~~~~G~~~ 322 (386)
T 3v65_B 260 MYWVDAKHH-------VIERANLDGSH-----RKAVISQGL--PHPFAITVFEDSLYWTDWHTKSINSANKFTGKNQ 322 (386)
T ss_dssp EEEEETTTT-------EEEEECTTSCS-----CEEEECSSC--SSEEEEEEETTEEEEEETTTTEEEEEETTTCCSC
T ss_pred EEEEECCCC-------EEEEEeCCCCe-----eEEEEECCC--CCceEEEEECCEEEEeeCCCCeEEEEECCCCcce
Confidence 999876432 45555543321 112211122 567666555558888764 446999996555543
|
| >1k8k_C P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-propeller, structural protein; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1tyq_C* 1u2v_C* 2p9i_C* 2p9k_C* 2p9l_C 2p9n_C* 2p9p_C* 2p9s_C* 2p9u_C* 3rse_C 3dxm_C* 3dxk_C | Back alignment and structure |
|---|
Probab=92.01 E-value=5.7 Score=34.50 Aligned_cols=193 Identities=10% Similarity=0.095 Sum_probs=95.2
Q ss_pred CCccEEEEEeccccceeecCCcCCCCCCCCcceEEEeeecCCCCeEEEEEEEEcCCCCccEEEEEEecCCcEEEccCCCc
Q 017748 115 SRRNIMLLLNPLTKRHRVLPTFYRDLSRCVPSLEGFGFDVGSGDFKLVKILAFGKPMNYTEVAVFSLRVNSWRRIQDFPY 194 (366)
Q Consensus 115 ~~~~~~~V~NP~t~~~~~LP~~~~~~~~~~~~~~~lg~d~~~~~ykvv~~~~~~~~~~~~~~~vyss~t~~W~~~~~~~~ 194 (366)
....+. |+|..++++..+-....+ ......+.+.+. +.+-+.+ . ....+.+|+..++.+........
T Consensus 28 ~d~~v~-i~~~~~~~~~~~~~~~~h----~~~v~~~~~~~~-~~~l~~~-~------~dg~i~vwd~~~~~~~~~~~~~~ 94 (372)
T 1k8k_C 28 NNHEVH-IYEKSGNKWVQVHELKEH----NGQVTGVDWAPD-SNRIVTC-G------TDRNAYVWTLKGRTWKPTLVILR 94 (372)
T ss_dssp SSSEEE-EEEEETTEEEEEEEEECC----SSCEEEEEEETT-TTEEEEE-E------TTSCEEEEEEETTEEEEEEECCC
T ss_pred CCCEEE-EEeCCCCcEEeeeeecCC----CCcccEEEEeCC-CCEEEEE-c------CCCeEEEEECCCCeeeeeEEeec
Confidence 455677 888888753222222111 123455666663 3333322 1 13468899998887754322111
Q ss_pred ceecCCcceEE--CCcEEEEEeeCCCCCCCcEEEEEECCCce-e---eeeCCCCccCCCCceEEEEEE-CCeEEEEEeec
Q 017748 195 FWVTGTCSVFV--NGALHWTAALNQDADRNDIIIAFDLKSEE-F---YQVPLPPIVGIEGYYILLEAL-GGCLCLLCKFD 267 (366)
Q Consensus 195 ~~~~~~~~v~~--~G~lYw~~~~~~~~~~~~~i~~fD~~~~~-~---~~i~lP~~~~~~~~~~~l~~~-~g~L~l~~~~~ 267 (366)
.. ..-..+.+ +|.....+..+ ..|..+|+.+.. + ..+..+... ....+... +|++.+++..+
T Consensus 95 ~~-~~v~~~~~~~~~~~l~~~~~d------~~v~i~d~~~~~~~~~~~~~~~~~~~----~i~~~~~~~~~~~l~~~~~d 163 (372)
T 1k8k_C 95 IN-RAARCVRWAPNEKKFAVGSGS------RVISICYFEQENDWWVCKHIKKPIRS----TVLSLDWHPNSVLLAAGSCD 163 (372)
T ss_dssp CS-SCEEEEEECTTSSEEEEEETT------SSEEEEEEETTTTEEEEEEECTTCCS----CEEEEEECTTSSEEEEEETT
T ss_pred CC-CceeEEEECCCCCEEEEEeCC------CEEEEEEecCCCcceeeeeeecccCC----CeeEEEEcCCCCEEEEEcCC
Confidence 10 00111222 35544444433 246666766543 1 222222211 22333333 46665555544
Q ss_pred CCCCCCcEEEEEeccCC-----CCCce-------EEEEEeccCCCceeeEEEEecCCcEEEEEeeCCeEEEEeCCCCeEE
Q 017748 268 DDDDDRPWDLWVMKEYG-----VNDSW-------TKLATLLNVGGGNVKPLVYSRSEDKVLLHAVRGDLCWYDLERHRVR 335 (366)
Q Consensus 268 ~~~~~~~l~iW~l~~~~-----~~~~W-------~~~~~i~~~~~~~~~~~~~~~~g~~i~~~~~~~~~~~yd~~t~~~~ 335 (366)
. .+.+|-+.... ....| ..+..+.... ....-+.+..++..++....++.+..||+++++..
T Consensus 164 g-----~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~v~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~ 237 (372)
T 1k8k_C 164 F-----KCRIFSAYIKEVEERPAPTPWGSKMPFGELMFESSSSC-GWVHGVCFSANGSRVAWVSHDSTVCLADADKKMAV 237 (372)
T ss_dssp S-----CEEEEECCCTTTSCCCCCBTTBSCCCTTCEEEECCCCS-SCEEEEEECSSSSEEEEEETTTEEEEEEGGGTTEE
T ss_pred C-----CEEEEEcccccccccccccccccccchhhheEecCCCC-CeEEEEEECCCCCEEEEEeCCCEEEEEECCCCcee
Confidence 4 89999864211 01112 2233332111 11444566677766777777888999999888754
Q ss_pred Ee
Q 017748 336 SI 337 (366)
Q Consensus 336 ~v 337 (366)
..
T Consensus 238 ~~ 239 (372)
T 1k8k_C 238 AT 239 (372)
T ss_dssp EE
T ss_pred EE
Confidence 43
|
| >3m0c_C LDL receptor, low-density lipoprotein receptor; protein complex, beta propeller, cholesterol clearance, PCSK autocatalytic cleavage; 7.01A {Homo sapiens} | Back alignment and structure |
|---|
Probab=91.68 E-value=11 Score=37.32 Aligned_cols=178 Identities=13% Similarity=0.044 Sum_probs=93.7
Q ss_pred eEEEeeecCCCCeEEEEEEEEcCCCCccEEEEEEecCCcEEEccCCCcceecCCcceEE---CCcEEEEEeeCCCCCCCc
Q 017748 147 LEGFGFDVGSGDFKLVKILAFGKPMNYTEVAVFSLRVNSWRRIQDFPYFWVTGTCSVFV---NGALHWTAALNQDADRND 223 (366)
Q Consensus 147 ~~~lg~d~~~~~ykvv~~~~~~~~~~~~~~~vyss~t~~W~~~~~~~~~~~~~~~~v~~---~G~lYw~~~~~~~~~~~~ 223 (366)
..++++|...+ +|... +. ....++++++....-+.+..-.. ....++.+ +|.|||...... .
T Consensus 473 P~GLAvD~~~~--~LY~t---D~--~~~~I~v~~ldG~~~~~l~~~~l---~~P~gIaVDp~~g~LYwtD~g~~-----~ 537 (791)
T 3m0c_C 473 PDGLAVDWIHS--NIYWT---DS--VLGTVSVADTKGVKRKTLFRENG---SKPRAIVVDPVHGFMYWTDWGTP-----A 537 (791)
T ss_dssp CCEEEEETTTT--EEEEE---ET--TTTEEEEEETTSSSEEEEEECTT---CCEEEEEEETTTTEEEEEECSSS-----C
T ss_pred cceeeeeecCC--cEEEE---ec--CCCeEEEEeCCCCeEEEEEeCCC---CCcceEEEecCCCCEEEecCCCC-----C
Confidence 44677777654 22222 11 13467778776555444421000 11235555 489999864331 3
Q ss_pred EEEEEECCCceeeeeCCCCccCCCCceEEEEE--ECCeEEEEEeecCCCCCCcEEEEEeccCCCCCceEEEEEeccCCCc
Q 017748 224 IIIAFDLKSEEFYQVPLPPIVGIEGYYILLEA--LGGCLCLLCKFDDDDDDRPWDLWVMKEYGVNDSWTKLATLLNVGGG 301 (366)
Q Consensus 224 ~i~~fD~~~~~~~~i~lP~~~~~~~~~~~l~~--~~g~L~l~~~~~~~~~~~~l~iW~l~~~~~~~~W~~~~~i~~~~~~ 301 (366)
.|..+++....-..+. .... ..-.-|+. .+|+||++.... -.||..+-.+. .....+ -....+
T Consensus 538 ~I~~~~~dG~~~~~lv-~~~l---~~P~GLavD~~~~~LYwaD~~~-------~~I~~~d~dG~-~~~~v~--~~~~~l- 602 (791)
T 3m0c_C 538 KIKKGGLNGVDIYSLV-TENI---QWPNGITLDLLSGRLYWVDSKL-------HSISSIDVNGG-NRKTIL--EDEKRL- 602 (791)
T ss_dssp EEEEEETTSCCEEEEE-CSSC---SCEEEEEEETTTTEEEEEETTT-------TEEEEEETTSC-SCEEEE--ECTTTT-
T ss_pred eEEEEecCCCceEEEE-eCCC---CCceEEEEecCCCeEEEEeCCC-------CcEEEEecCCC-ceEEEe--cCCCcc-
Confidence 7999999765443331 1111 12223443 378999986532 24666654432 211111 111223
Q ss_pred eeeEEEEecCCcEEEEEeeC-CeEEEEeCCCCeEEEeeeecCcccCeeeeeEEecCc
Q 017748 302 NVKPLVYSRSEDKVLLHAVR-GDLCWYDLERHRVRSIVEIDDKVRRCDMRTVCVNTL 357 (366)
Q Consensus 302 ~~~~~~~~~~g~~i~~~~~~-~~~~~yd~~t~~~~~v~~~~~~~~~~~~~~~y~~sl 357 (366)
..|.++...++.||+.... ..|..+|..+++-..+ -..+ ....+.+.+|.+..
T Consensus 603 -~~P~glav~~~~lYwtD~~~~~I~~~dk~tG~~~~~-l~~~-l~~P~~i~v~h~~~ 656 (791)
T 3m0c_C 603 -AHPFSLAVFEDKVFWTDIINEAIFSANRLTGSDVNL-LAEN-LLSPEDMVLFHNLT 656 (791)
T ss_dssp -SSEEEEEEETTEEEEEETTTTEEEEEETTTCCCCEE-EECS-CSCCCCEEEESGGG
T ss_pred -CCCCEEEEeCCEEEEEECCCCEEEEEeCCCCcceEE-eecC-CCCceeEeeecccc
Confidence 6777777666688887654 4689999877754433 1222 33445566666554
|
| >2pm9_A Protein WEB1, protein transport protein SEC31; beta propeller; 3.30A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=91.54 E-value=7 Score=34.59 Aligned_cols=198 Identities=12% Similarity=0.046 Sum_probs=94.6
Q ss_pred eeEEeecCCccEEEEEeccccc------eeecCCcCCCCCCCCcceEEEeeecCCCCeEEEEEEEEcCCCCccEEEEEEe
Q 017748 108 GLLALEDSRRNIMLLLNPLTKR------HRVLPTFYRDLSRCVPSLEGFGFDVGSGDFKLVKILAFGKPMNYTEVAVFSL 181 (366)
Q Consensus 108 Gll~~~~~~~~~~~V~NP~t~~------~~~LP~~~~~~~~~~~~~~~lg~d~~~~~ykvv~~~~~~~~~~~~~~~vyss 181 (366)
.+++....+..+. +||..+++ ........... ......+.+.+..+.+ ++... ....+.+|+.
T Consensus 127 ~~l~s~~~dg~v~-iwd~~~~~~~~~~~~~~~~~~~~~~---~~~v~~~~~~~~~~~~-l~~~~------~dg~v~iwd~ 195 (416)
T 2pm9_A 127 NVLASGGNNGEIF-IWDMNKCTESPSNYTPLTPGQSMSS---VDEVISLAWNQSLAHV-FASAG------SSNFASIWDL 195 (416)
T ss_dssp TBEEEECSSSCEE-BCBTTTTSSCTTTCCCBCCCCSCCS---SCCCCEEEECSSCTTE-EEEES------SSSCEEEEET
T ss_pred CEEEEEcCCCeEE-EEECCCCccccccccccccccccCC---CCCeeEEEeCCCCCcE-EEEEc------CCCCEEEEEC
Confidence 3444444556677 88888776 22111111111 1133455666543333 22221 1446888888
Q ss_pred cCCcEEEccCCCcce---ecCCcceEE--CC-cEEEEEeeCCCCCCCcEEEEEECCCceeeeeCCC-CccCCCCceEEEE
Q 017748 182 RVNSWRRIQDFPYFW---VTGTCSVFV--NG-ALHWTAALNQDADRNDIIIAFDLKSEEFYQVPLP-PIVGIEGYYILLE 254 (366)
Q Consensus 182 ~t~~W~~~~~~~~~~---~~~~~~v~~--~G-~lYw~~~~~~~~~~~~~i~~fD~~~~~~~~i~lP-~~~~~~~~~~~l~ 254 (366)
.++.-...-...... ...-..+.+ +| .+...+..+.. ...|..+|+.+..-....+. .. ......+.
T Consensus 196 ~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~---~~~i~~~d~~~~~~~~~~~~~~~---~~~v~~~~ 269 (416)
T 2pm9_A 196 KAKKEVIHLSYTSPNSGIKQQLSVVEWHPKNSTRVATATGSDN---DPSILIWDLRNANTPLQTLNQGH---QKGILSLD 269 (416)
T ss_dssp TTTEEEEEECCCCCSSCCCCCEEEEEECSSCTTEEEEEECCSS---SCCCCEEETTSTTSCSBCCCSCC---SSCEEEEE
T ss_pred CCCCcceEEeccccccccCCceEEEEECCCCCCEEEEEECCCC---CceEEEEeCCCCCCCcEEeecCc---cCceeEEE
Confidence 876543221111000 000112222 23 34444433210 01588889887532111222 11 11233344
Q ss_pred EE--CCeEEEEEeecCCCCCCcEEEEEeccCCCCCceEEEEEeccCCCceeeEEEEecCC-cEEEEEeeCCeEEEEeCCC
Q 017748 255 AL--GGCLCLLCKFDDDDDDRPWDLWVMKEYGVNDSWTKLATLLNVGGGNVKPLVYSRSE-DKVLLHAVRGDLCWYDLER 331 (366)
Q Consensus 255 ~~--~g~L~l~~~~~~~~~~~~l~iW~l~~~~~~~~W~~~~~i~~~~~~~~~~~~~~~~g-~~i~~~~~~~~~~~yd~~t 331 (366)
.. +|++.+....+. .+.+|-++.. ..+..+.... ....-+.+.+++ ..++....++.+..||+.+
T Consensus 270 ~s~~~~~~l~s~~~dg-----~v~~wd~~~~------~~~~~~~~~~-~~v~~~~~s~~~~~~l~s~~~d~~i~iw~~~~ 337 (416)
T 2pm9_A 270 WCHQDEHLLLSSGRDN-----TVLLWNPESA------EQLSQFPARG-NWCFKTKFAPEAPDLFACASFDNKIEVQTLQN 337 (416)
T ss_dssp ECSSCSSCEEEEESSS-----EEEEECSSSC------CEEEEEECSS-SCCCCEEECTTCTTEEEECCSSSEEEEEESCC
T ss_pred eCCCCCCeEEEEeCCC-----CEEEeeCCCC------ccceeecCCC-CceEEEEECCCCCCEEEEEecCCcEEEEEccC
Confidence 43 566666666555 8999987752 2334443211 113345666766 4555556677899999988
Q ss_pred CeE
Q 017748 332 HRV 334 (366)
Q Consensus 332 ~~~ 334 (366)
.+-
T Consensus 338 ~~~ 340 (416)
T 2pm9_A 338 LTN 340 (416)
T ss_dssp CCC
T ss_pred CCC
Confidence 764
|
| >1ri6_A Putative isomerase YBHE; 7-bladed propeller, enzyme, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.00A {Escherichia coli} SCOP: b.69.11.1 | Back alignment and structure |
|---|
Probab=91.54 E-value=4.9 Score=34.42 Aligned_cols=144 Identities=8% Similarity=0.085 Sum_probs=74.2
Q ss_pred ccEEEEEEec-CCcEEEccCCCcceecCCcceEE--CCc-EEEEEeeCCCCCCCcEEEEEECC--Cceeeee-CCCCccC
Q 017748 173 YTEVAVFSLR-VNSWRRIQDFPYFWVTGTCSVFV--NGA-LHWTAALNQDADRNDIIIAFDLK--SEEFYQV-PLPPIVG 245 (366)
Q Consensus 173 ~~~~~vyss~-t~~W~~~~~~~~~~~~~~~~v~~--~G~-lYw~~~~~~~~~~~~~i~~fD~~--~~~~~~i-~lP~~~~ 245 (366)
...+.+|+.. ++..+.+...+.. .....+.+ +|. +|...... ..|..||+. ++++..+ .++...
T Consensus 14 ~~~v~~~~~~~~~~~~~~~~~~~~--~~~~~~~~spdg~~l~~~~~~~------~~v~~~~~~~~~~~~~~~~~~~~~~- 84 (343)
T 1ri6_A 14 SQQIHVWNLNHEGALTLTQVVDVP--GQVQPMVVSPDKRYLYVGVRPE------FRVLAYRIAPDDGALTFAAESALPG- 84 (343)
T ss_dssp GTEEEEEEECTTSCEEEEEEEECS--SCCCCEEECTTSSEEEEEETTT------TEEEEEEECTTTCCEEEEEEEECSS-
T ss_pred CCeEEEEEECCCCcEEEeeeEecC--CCCceEEECCCCCEEEEeecCC------CeEEEEEecCCCCceeeccccccCC-
Confidence 3467777774 4555443221111 11112333 565 44444331 267777776 6666543 222211
Q ss_pred CCCceEEEEEE-CCeEEEEEeecCCCCCCcEEEEEeccCCCCCceEEEEEeccCCCceeeEEEEecCCcEEEEEe-eCCe
Q 017748 246 IEGYYILLEAL-GGCLCLLCKFDDDDDDRPWDLWVMKEYGVNDSWTKLATLLNVGGGNVKPLVYSRSEDKVLLHA-VRGD 323 (366)
Q Consensus 246 ~~~~~~~l~~~-~g~L~l~~~~~~~~~~~~l~iW~l~~~~~~~~W~~~~~i~~~~~~~~~~~~~~~~g~~i~~~~-~~~~ 323 (366)
....+... +|+..++...... .+.+|.+++ + ........+..... ..-+++..+|+.+++.. .++.
T Consensus 85 ---~~~~~~~s~dg~~l~~~~~~~~----~i~~~d~~~-~--~~~~~~~~~~~~~~--~~~~~~s~dg~~l~~~~~~~~~ 152 (343)
T 1ri6_A 85 ---SLTHISTDHQGQFVFVGSYNAG----NVSVTRLED-G--LPVGVVDVVEGLDG--CHSANISPDNRTLWVPALKQDR 152 (343)
T ss_dssp ---CCSEEEECTTSSEEEEEETTTT----EEEEEEEET-T--EEEEEEEEECCCTT--BCCCEECTTSSEEEEEEGGGTE
T ss_pred ---CCcEEEEcCCCCEEEEEecCCC----eEEEEECCC-C--ccccccccccCCCC--ceEEEECCCCCEEEEecCCCCE
Confidence 11123332 4554433433222 799998862 2 23444455543322 44456777886777766 5677
Q ss_pred EEEEeCCC-CeEEEe
Q 017748 324 LCWYDLER-HRVRSI 337 (366)
Q Consensus 324 ~~~yd~~t-~~~~~v 337 (366)
+..||+.+ +++..+
T Consensus 153 v~~~d~~~~~~~~~~ 167 (343)
T 1ri6_A 153 ICLFTVSDDGHLVAQ 167 (343)
T ss_dssp EEEEEECTTSCEEEE
T ss_pred EEEEEecCCCceeee
Confidence 99999998 777644
|
| >4g56_B MGC81050 protein; protein arginine methyltransferase, protein complexes, histo methylation, transferase; HET: SAH; 2.95A {Xenopus laevis} | Back alignment and structure |
|---|
Probab=91.17 E-value=7.4 Score=34.15 Aligned_cols=196 Identities=11% Similarity=-0.028 Sum_probs=90.2
Q ss_pred ceeEEeecCCccEEEEEeccccceeecCCcCCCCCCCCcceEEEeeecCCCCeEEEEEEEEcCCCCccEEEEEEecCCcE
Q 017748 107 NGLLALEDSRRNIMLLLNPLTKRHRVLPTFYRDLSRCVPSLEGFGFDVGSGDFKLVKILAFGKPMNYTEVAVFSLRVNSW 186 (366)
Q Consensus 107 ~Gll~~~~~~~~~~~V~NP~t~~~~~LP~~~~~~~~~~~~~~~lg~d~~~~~ykvv~~~~~~~~~~~~~~~vyss~t~~W 186 (366)
+|.++.......+. |||..+++...........+ ......+.+.|. +.+ ++... ....+.+++..++.-
T Consensus 105 d~~~l~~s~dg~v~-lWd~~~~~~~~~~~~~~~~h--~~~V~~v~~spd-g~~-l~sgs------~dg~v~iwd~~~~~~ 173 (357)
T 4g56_B 105 EKGILVASDSGAVE-LWEILEKESLLVNKFAKYEH--DDIVKTLSVFSD-GTQ-AVSGG------KDFSVKVWDLSQKAV 173 (357)
T ss_dssp TTEEEEEETTSCEE-EC--------CCCCEEECCC--SSCEEEEEECSS-SSE-EEEEE------TTSCEEEEETTTTEE
T ss_pred CCCEEEEECCCEEE-EeeccccceeEEEeeccCCC--CCCEEEEEECCC-CCE-EEEEe------CCCeEEEEECCCCcE
Confidence 45454444556788 99998887554433221111 123445666553 223 22222 144578888877643
Q ss_pred EE-ccCCCcceecCCcceEE--CCcEEEEEeeCCCCCCCcEEEEEECCCceeeee-CCCCccCCCCceEEEEEE--CCeE
Q 017748 187 RR-IQDFPYFWVTGTCSVFV--NGALHWTAALNQDADRNDIIIAFDLKSEEFYQV-PLPPIVGIEGYYILLEAL--GGCL 260 (366)
Q Consensus 187 ~~-~~~~~~~~~~~~~~v~~--~G~lYw~~~~~~~~~~~~~i~~fD~~~~~~~~i-~lP~~~~~~~~~~~l~~~--~g~L 260 (366)
.. +..-... -.++.+ +|.-+.++...+ ..|..+|+++.+.... ...... .....+... ++.+
T Consensus 174 ~~~~~~h~~~----v~~v~~s~~~~~~~~s~~~d-----g~v~~wd~~~~~~~~~~~~~~~~---~~v~~v~~sp~~~~~ 241 (357)
T 4g56_B 174 LKSYNAHSSE----VNCVAACPGKDTIFLSCGED-----GRILLWDTRKPKPATRIDFCASD---TIPTSVTWHPEKDDT 241 (357)
T ss_dssp EEEECCCSSC----EEEEEECTTCSSCEEEEETT-----SCEEECCTTSSSCBCBCCCTTCC---SCEEEEEECTTSTTE
T ss_pred EEEEcCCCCC----EEEEEEccCCCceeeeeccC-----CceEEEECCCCceeeeeeecccc---ccccchhhhhcccce
Confidence 22 1110000 112222 232222332222 2588889887654322 222211 122233332 3556
Q ss_pred EEEEeecCCCCCCcEEEEEeccCCCCCceEEEEEeccCCCceeeEEEEecCCcEEEE-EeeCCeEEEEeCCCCeEEEe
Q 017748 261 CLLCKFDDDDDDRPWDLWVMKEYGVNDSWTKLATLLNVGGGNVKPLVYSRSEDKVLL-HAVRGDLCWYDLERHRVRSI 337 (366)
Q Consensus 261 ~l~~~~~~~~~~~~l~iW~l~~~~~~~~W~~~~~i~~~~~~~~~~~~~~~~g~~i~~-~~~~~~~~~yd~~t~~~~~v 337 (366)
.+....+. .+.+|-+.... .+..+.... +...-+++..+++.++. ...++.+.+||+++++....
T Consensus 242 la~g~~d~-----~i~~wd~~~~~------~~~~~~~~~-~~v~~l~~sp~~~~~lasgs~D~~i~iwd~~~~~~~~~ 307 (357)
T 4g56_B 242 FACGDETG-----NVSLVNIKNPD------SAQTSAVHS-QNITGLAYSYHSSPFLASISEDCTVAVLDADFSEVFRD 307 (357)
T ss_dssp EEEEESSS-----CEEEEESSCGG------GCEEECCCS-SCEEEEEECSSSSCCEEEEETTSCEEEECTTSCEEEEE
T ss_pred EEEeeccc-----ceeEEECCCCc------EeEEEeccc-eeEEEEEEcCCCCCEEEEEeCCCEEEEEECCCCcEeEE
Confidence 55555444 89999876531 122232111 11344566666645544 45567799999999986655
|
| >4gqb_B Methylosome protein 50; TIM barrel, beta-propeller, methyltransferase, methylation, transferase-protein binding complex; HET: 0XU; 2.06A {Homo sapiens} | Back alignment and structure |
|---|
Probab=91.16 E-value=7.3 Score=34.10 Aligned_cols=196 Identities=10% Similarity=-0.026 Sum_probs=96.4
Q ss_pred ceeEEeecCCccEEEEEeccccceeecCCcCCCCCCCCcceEEEeeecCCCCeEEEEEEEEcCCCCccEEEEEEecCCcE
Q 017748 107 NGLLALEDSRRNIMLLLNPLTKRHRVLPTFYRDLSRCVPSLEGFGFDVGSGDFKLVKILAFGKPMNYTEVAVFSLRVNSW 186 (366)
Q Consensus 107 ~Gll~~~~~~~~~~~V~NP~t~~~~~LP~~~~~~~~~~~~~~~lg~d~~~~~ykvv~~~~~~~~~~~~~~~vyss~t~~W 186 (366)
++.++....+..+. |||..+++...........+ ......+.+.|. +.+ ++... ....+.+++.+++.=
T Consensus 93 d~~l~~~s~dg~v~-lWd~~~~~~~~~~~~~~~~H--~~~V~~v~~spd-g~~-l~sgs------~d~~i~iwd~~~~~~ 161 (344)
T 4gqb_B 93 ERGILVASDSGAVE-LWELDENETLIVSKFCKYEH--DDIVSTVSVLSS-GTQ-AVSGS------KDICIKVWDLAQQVV 161 (344)
T ss_dssp TTEEEEEETTSEEE-EEEECTTSSCEEEEEEEECC--SSCEEEEEECTT-SSE-EEEEE------TTSCEEEEETTTTEE
T ss_pred CCeEEEEECCCEEE-EEeccCCCceeEeeccccCC--CCCEEEEEECCC-CCE-EEEEe------CCCeEEEEECCCCcE
Confidence 45555555566788 99998887554332211111 123445666654 233 22221 134578888877542
Q ss_pred E-EccCCCcceecCCcceEE--CCcEEEEEeeCCCCCCCcEEEEEECCCceeee-eCCCCccCCCCceEEEEEE--CCeE
Q 017748 187 R-RIQDFPYFWVTGTCSVFV--NGALHWTAALNQDADRNDIIIAFDLKSEEFYQ-VPLPPIVGIEGYYILLEAL--GGCL 260 (366)
Q Consensus 187 ~-~~~~~~~~~~~~~~~v~~--~G~lYw~~~~~~~~~~~~~i~~fD~~~~~~~~-i~lP~~~~~~~~~~~l~~~--~g~L 260 (366)
. .+..-... -.++.+ +|.-+.++...+ ..|..+|+++.+... +..+... .....+... ++++
T Consensus 162 ~~~~~~h~~~----V~~~~~~~~~~~~l~s~s~D-----~~v~iwd~~~~~~~~~~~~~~~~---~~~~~~~~~p~~~~~ 229 (344)
T 4gqb_B 162 LSSYRAHAAQ----VTCVAASPHKDSVFLSCSED-----NRILLWDTRCPKPASQIGCSAPG---YLPTSLAWHPQQSEV 229 (344)
T ss_dssp EEEECCCSSC----EEEEEECSSCTTEEEEEETT-----SCEEEEETTSSSCEEECC----C---CCEEEEEECSSCTTE
T ss_pred EEEEcCcCCc----eEEEEecCCCCCceeeeccc-----cccccccccccceeeeeecceee---ccceeeeecCCCCcc
Confidence 2 11110000 011222 343233333322 268889998765433 3332221 112223332 4566
Q ss_pred EEEEeecCCCCCCcEEEEEeccCCCCCceEEEEEeccCCCceeeEEEEecCCcEEEE-EeeCCeEEEEeCCCCeEEEe
Q 017748 261 CLLCKFDDDDDDRPWDLWVMKEYGVNDSWTKLATLLNVGGGNVKPLVYSRSEDKVLL-HAVRGDLCWYDLERHRVRSI 337 (366)
Q Consensus 261 ~l~~~~~~~~~~~~l~iW~l~~~~~~~~W~~~~~i~~~~~~~~~~~~~~~~g~~i~~-~~~~~~~~~yd~~t~~~~~v 337 (366)
.+.+..+. .+.||-+... ..+..+.... ....-+++.++|..++. ...|+.+..||.++++..+.
T Consensus 230 l~sg~~dg-----~v~~wd~~~~------~~~~~~~~h~-~~v~~v~fsp~g~~~lasgs~D~~i~vwd~~~~~~~~~ 295 (344)
T 4gqb_B 230 FVFGDENG-----TVSLVDTKST------SCVLSSAVHS-QCVTGLVFSPHSVPFLASLSEDCSLAVLDSSLSELFRS 295 (344)
T ss_dssp EEEEETTS-----EEEEEESCC--------CCEEEECCS-SCEEEEEECSSSSCCEEEEETTSCEEEECTTCCEEEEE
T ss_pred eEEeccCC-----cEEEEECCCC------cEEEEEcCCC-CCEEEEEEccCCCeEEEEEeCCCeEEEEECCCCcEEEE
Confidence 66555444 8999977652 1223332111 11444566677645444 55677799999999986554
|
| >3odt_A Protein DOA1; ubiquitin, nuclear protein; HET: MSE MES; 1.35A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=90.73 E-value=6.7 Score=32.95 Aligned_cols=100 Identities=13% Similarity=0.146 Sum_probs=54.6
Q ss_pred EEEEEECCCceee-eeCCCCccCCCCceEEEEEE-CCeEEEEEeecCCCCCCcEEEEEeccCCCCCceEEEEEeccCCCc
Q 017748 224 IIIAFDLKSEEFY-QVPLPPIVGIEGYYILLEAL-GGCLCLLCKFDDDDDDRPWDLWVMKEYGVNDSWTKLATLLNVGGG 301 (366)
Q Consensus 224 ~i~~fD~~~~~~~-~i~lP~~~~~~~~~~~l~~~-~g~L~l~~~~~~~~~~~~l~iW~l~~~~~~~~W~~~~~i~~~~~~ 301 (366)
.|..+|+.+.+.. .+..+.. ....+... +|+ .++...+. .+.+|-+... + .+..+.... .
T Consensus 206 ~i~i~d~~~~~~~~~~~~~~~-----~i~~~~~~~~~~-l~~~~~dg-----~v~iwd~~~~----~--~~~~~~~~~-~ 267 (313)
T 3odt_A 206 LIKLVDMHTGDVLRTYEGHES-----FVYCIKLLPNGD-IVSCGEDR-----TVRIWSKENG----S--LKQVITLPA-I 267 (313)
T ss_dssp EEEEEETTTCCEEEEEECCSS-----CEEEEEECTTSC-EEEEETTS-----EEEEECTTTC----C--EEEEEECSS-S
T ss_pred eEEEEECCchhhhhhhhcCCc-----eEEEEEEecCCC-EEEEecCC-----EEEEEECCCC----c--eeEEEeccC-c
Confidence 7999999876543 2232221 23334444 344 33333333 8999988762 1 223332211 1
Q ss_pred eeeEEEEecCCcEEEEEeeCCeEEEEeCCCCeEEEeeeecC
Q 017748 302 NVKPLVYSRSEDKVLLHAVRGDLCWYDLERHRVRSIVEIDD 342 (366)
Q Consensus 302 ~~~~~~~~~~g~~i~~~~~~~~~~~yd~~t~~~~~v~~~~~ 342 (366)
...-+.+..++ .++....++.+..||++++++....++++
T Consensus 268 ~i~~~~~~~~~-~~~~~~~dg~i~iw~~~~~~~~~~~~~~~ 307 (313)
T 3odt_A 268 SIWSVDCMSNG-DIIVGSSDNLVRIFSQEKSRWASEDEIKG 307 (313)
T ss_dssp CEEEEEECTTS-CEEEEETTSCEEEEESCGGGCCC------
T ss_pred eEEEEEEccCC-CEEEEeCCCcEEEEeCCCCceeehhhhhh
Confidence 14445666777 56667777789999999998765534443
|
| >3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A | Back alignment and structure |
|---|
Probab=90.61 E-value=14 Score=36.31 Aligned_cols=190 Identities=11% Similarity=0.061 Sum_probs=98.0
Q ss_pred ceeEEeecCCccEEEEEeccccceeecCCcCCCCCCCCcceEEEeeecCCCCeEEEEEEEEcCCCCccEEEEEEecCC-c
Q 017748 107 NGLLALEDSRRNIMLLLNPLTKRHRVLPTFYRDLSRCVPSLEGFGFDVGSGDFKLVKILAFGKPMNYTEVAVFSLRVN-S 185 (366)
Q Consensus 107 ~Gll~~~~~~~~~~~V~NP~t~~~~~LP~~~~~~~~~~~~~~~lg~d~~~~~ykvv~~~~~~~~~~~~~~~vyss~t~-~ 185 (366)
+.++........+. |||..+++....-... ......+.+.|.. .+ ++... ....+.+|+..++ .
T Consensus 67 ~~~l~~~~~dg~i~-vw~~~~~~~~~~~~~~------~~~v~~~~~s~~~-~~-l~~~~------~dg~i~vw~~~~~~~ 131 (814)
T 3mkq_A 67 KNWIIVGSDDFRIR-VFNYNTGEKVVDFEAH------PDYIRSIAVHPTK-PY-VLSGS------DDLTVKLWNWENNWA 131 (814)
T ss_dssp GTEEEEEETTSEEE-EEETTTCCEEEEEECC------SSCEEEEEECSSS-SE-EEEEE------TTSEEEEEEGGGTSE
T ss_pred CCEEEEEeCCCeEE-EEECCCCcEEEEEecC------CCCEEEEEEeCCC-CE-EEEEc------CCCEEEEEECCCCce
Confidence 33444444566778 9998888754322111 1134455665542 23 22221 1456888888765 2
Q ss_pred EEE-ccCCCcceecCCcceEE---CCcEEEEEeeCCCCCCCcEEEEEECCCceeeee-CCCCccCCCCceEEEEEE---C
Q 017748 186 WRR-IQDFPYFWVTGTCSVFV---NGALHWTAALNQDADRNDIIIAFDLKSEEFYQV-PLPPIVGIEGYYILLEAL---G 257 (366)
Q Consensus 186 W~~-~~~~~~~~~~~~~~v~~---~G~lYw~~~~~~~~~~~~~i~~fD~~~~~~~~i-~lP~~~~~~~~~~~l~~~---~ 257 (366)
... +..-... -.++.. +|.....+..+ ..|..+|+.+...... ..+... ....+... +
T Consensus 132 ~~~~~~~~~~~----v~~~~~~p~~~~~l~~~~~d------g~v~vwd~~~~~~~~~~~~~~~~----~v~~~~~~~~~~ 197 (814)
T 3mkq_A 132 LEQTFEGHEHF----VMCVAFNPKDPSTFASGCLD------RTVKVWSLGQSTPNFTLTTGQER----GVNYVDYYPLPD 197 (814)
T ss_dssp EEEEEECCSSC----EEEEEEETTEEEEEEEEETT------SEEEEEETTCSSCSEEEECCCTT----CCCEEEECCSTT
T ss_pred EEEEEcCCCCc----EEEEEEEcCCCCEEEEEeCC------CeEEEEECCCCcceeEEecCCCC----CEEEEEEEECCC
Confidence 221 1111100 112222 34444444433 3799999876543222 222111 11122222 5
Q ss_pred CeEEEEEeecCCCCCCcEEEEEeccCCCCCceEEEEEeccCCCceeeEEEEecCCcEEEEEeeCCeEEEEeCCCCeEEEe
Q 017748 258 GCLCLLCKFDDDDDDRPWDLWVMKEYGVNDSWTKLATLLNVGGGNVKPLVYSRSEDKVLLHAVRGDLCWYDLERHRVRSI 337 (366)
Q Consensus 258 g~L~l~~~~~~~~~~~~l~iW~l~~~~~~~~W~~~~~i~~~~~~~~~~~~~~~~g~~i~~~~~~~~~~~yd~~t~~~~~v 337 (366)
|.+.+++..+. .+.+|-++. ...+..+.... +...-+.+.++|..++....++.+..||+.+++....
T Consensus 198 ~~~l~~~~~dg-----~i~~~d~~~------~~~~~~~~~~~-~~v~~~~~~~~~~~l~~~~~dg~v~vwd~~~~~~~~~ 265 (814)
T 3mkq_A 198 KPYMITASDDL-----TIKIWDYQT------KSCVATLEGHM-SNVSFAVFHPTLPIIISGSEDGTLKIWNSSTYKVEKT 265 (814)
T ss_dssp CCEEEEECTTS-----EEEEEETTT------TEEEEEEECCS-SCEEEEEECSSSSEEEEEETTSCEEEEETTTCSEEEE
T ss_pred CCEEEEEeCCC-----EEEEEECCC------CcEEEEEcCCC-CCEEEEEEcCCCCEEEEEeCCCeEEEEECCCCcEEEE
Confidence 66655555444 899997765 12233333211 1145566777886666667677899999999776544
|
| >2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B* | Back alignment and structure |
|---|
Probab=90.50 E-value=9.6 Score=34.36 Aligned_cols=193 Identities=9% Similarity=0.047 Sum_probs=104.5
Q ss_pred CceEEEeeeceeEEeecCCccEEEEEeccccceeecCCcCCCCCCCCcceEEEeeecCCCCeEEEEEEEEcCCCCccEEE
Q 017748 98 KFGFIIGSCNGLLALEDSRRNIMLLLNPLTKRHRVLPTFYRDLSRCVPSLEGFGFDVGSGDFKLVKILAFGKPMNYTEVA 177 (366)
Q Consensus 98 ~~~~~~~s~~Gll~~~~~~~~~~~V~NP~t~~~~~LP~~~~~~~~~~~~~~~lg~d~~~~~ykvv~~~~~~~~~~~~~~~ 177 (366)
..+..++..+.+++....+..+. +||..+++...--.. + .....++.+++ .+ ++... ....+.
T Consensus 160 ~~v~~~~~~~~~l~s~~~dg~i~-vwd~~~~~~~~~~~~--h----~~~v~~~~~~~---~~-l~s~s------~dg~i~ 222 (445)
T 2ovr_B 160 GGVWSSQMRDNIIISGSTDRTLK-VWNAETGECIHTLYG--H----TSTVRCMHLHE---KR-VVSGS------RDATLR 222 (445)
T ss_dssp SCEEEEEEETTEEEEEETTSCEE-EEETTTTEEEEEECC--C----SSCEEEEEEET---TE-EEEEE------TTSEEE
T ss_pred CCEEEEEecCCEEEEEeCCCeEE-EEECCcCcEEEEECC--C----CCcEEEEEecC---CE-EEEEe------CCCEEE
Confidence 33444555566776666677888 999988765432111 1 11233455542 33 22222 145688
Q ss_pred EEEecCCcEEE-ccCCCcceecCCcceEECCcEEEEEeeCCCCCCCcEEEEEECCCceeee-eCCCCccCCCCceEEEEE
Q 017748 178 VFSLRVNSWRR-IQDFPYFWVTGTCSVFVNGALHWTAALNQDADRNDIIIAFDLKSEEFYQ-VPLPPIVGIEGYYILLEA 255 (366)
Q Consensus 178 vyss~t~~W~~-~~~~~~~~~~~~~~v~~~G~lYw~~~~~~~~~~~~~i~~fD~~~~~~~~-i~lP~~~~~~~~~~~l~~ 255 (366)
+|+..++.-.. +..-. ....++..+|.....+..+ ..|..+|+.+.+... +..... ....+ .
T Consensus 223 ~wd~~~~~~~~~~~~~~----~~v~~~~~~~~~l~~~~~d------g~i~iwd~~~~~~~~~~~~~~~-----~v~~~-~ 286 (445)
T 2ovr_B 223 VWDIETGQCLHVLMGHV----AAVRCVQYDGRRVVSGAYD------FMVKVWDPETETCLHTLQGHTN-----RVYSL-Q 286 (445)
T ss_dssp EEESSSCCEEEEEECCS----SCEEEEEECSSCEEEEETT------SCEEEEEGGGTEEEEEECCCSS-----CEEEE-E
T ss_pred EEECCCCcEEEEEcCCc----ccEEEEEECCCEEEEEcCC------CEEEEEECCCCcEeEEecCCCC-----ceEEE-E
Confidence 88887654321 11111 1112344577766665544 368899998765432 232221 12222 2
Q ss_pred ECCeEEEEEeecCCCCCCcEEEEEeccCCCCCceEEEEEeccCCCceeeEEEEecCCcEEEEEeeCCeEEEEeCCCCeEE
Q 017748 256 LGGCLCLLCKFDDDDDDRPWDLWVMKEYGVNDSWTKLATLLNVGGGNVKPLVYSRSEDKVLLHAVRGDLCWYDLERHRVR 335 (366)
Q Consensus 256 ~~g~L~l~~~~~~~~~~~~l~iW~l~~~~~~~~W~~~~~i~~~~~~~~~~~~~~~~g~~i~~~~~~~~~~~yd~~t~~~~ 335 (366)
.+|...+.+..++ .+.+|-+... ..+..+.... ..+.++..+++.++....++.+..||+++++..
T Consensus 287 ~~~~~l~~~~~d~-----~i~i~d~~~~------~~~~~~~~~~---~~v~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~ 352 (445)
T 2ovr_B 287 FDGIHVVSGSLDT-----SIRVWDVETG------NCIHTLTGHQ---SLTSGMELKDNILVSGNADSTVKIWDIKTGQCL 352 (445)
T ss_dssp ECSSEEEEEETTS-----CEEEEETTTC------CEEEEECCCC---SCEEEEEEETTEEEEEETTSCEEEEETTTCCEE
T ss_pred ECCCEEEEEeCCC-----eEEEEECCCC------CEEEEEcCCc---ccEEEEEEeCCEEEEEeCCCeEEEEECCCCcEE
Confidence 3777666666555 8999988762 1233333211 223333345556666677778999999888754
Q ss_pred Ee
Q 017748 336 SI 337 (366)
Q Consensus 336 ~v 337 (366)
..
T Consensus 353 ~~ 354 (445)
T 2ovr_B 353 QT 354 (445)
T ss_dssp EE
T ss_pred EE
Confidence 43
|
| >4g56_B MGC81050 protein; protein arginine methyltransferase, protein complexes, histo methylation, transferase; HET: SAH; 2.95A {Xenopus laevis} | Back alignment and structure |
|---|
Probab=90.36 E-value=8.7 Score=33.65 Aligned_cols=179 Identities=9% Similarity=-0.108 Sum_probs=84.3
Q ss_pred CCccEEEEEeccccceeecCCcCCCCCCCCcceEEEeeecCCCCeEEEEEEEEcCCCCccEEEEEEecCCcEEEccCCCc
Q 017748 115 SRRNIMLLLNPLTKRHRVLPTFYRDLSRCVPSLEGFGFDVGSGDFKLVKILAFGKPMNYTEVAVFSLRVNSWRRIQDFPY 194 (366)
Q Consensus 115 ~~~~~~~V~NP~t~~~~~LP~~~~~~~~~~~~~~~lg~d~~~~~ykvv~~~~~~~~~~~~~~~vyss~t~~W~~~~~~~~ 194 (366)
....+. |||..+++....-... ......+.+.+..+.+- +.... ...+.+++.+++.-........
T Consensus 159 ~dg~v~-iwd~~~~~~~~~~~~h------~~~v~~v~~s~~~~~~~-~s~~~------dg~v~~wd~~~~~~~~~~~~~~ 224 (357)
T 4g56_B 159 KDFSVK-VWDLSQKAVLKSYNAH------SSEVNCVAACPGKDTIF-LSCGE------DGRILLWDTRKPKPATRIDFCA 224 (357)
T ss_dssp TTSCEE-EEETTTTEEEEEECCC------SSCEEEEEECTTCSSCE-EEEET------TSCEEECCTTSSSCBCBCCCTT
T ss_pred CCCeEE-EEECCCCcEEEEEcCC------CCCEEEEEEccCCCcee-eeecc------CCceEEEECCCCceeeeeeecc
Confidence 455677 8888887754321111 11233455555433332 22211 3357777776654221111100
Q ss_pred ceecCCcceEE---CCcEEEEEeeCCCCCCCcEEEEEECCCceee-eeCCCCccCCCCceEEEEEE-CC-eEEEEEeecC
Q 017748 195 FWVTGTCSVFV---NGALHWTAALNQDADRNDIIIAFDLKSEEFY-QVPLPPIVGIEGYYILLEAL-GG-CLCLLCKFDD 268 (366)
Q Consensus 195 ~~~~~~~~v~~---~G~lYw~~~~~~~~~~~~~i~~fD~~~~~~~-~i~lP~~~~~~~~~~~l~~~-~g-~L~l~~~~~~ 268 (366)
.. ....++.. ++.+...+..+ ..|..+|+.+.+-. .+..+.. ....+... +| ++.+.+..+.
T Consensus 225 ~~-~~v~~v~~sp~~~~~la~g~~d------~~i~~wd~~~~~~~~~~~~~~~-----~v~~l~~sp~~~~~lasgs~D~ 292 (357)
T 4g56_B 225 SD-TIPTSVTWHPEKDDTFACGDET------GNVSLVNIKNPDSAQTSAVHSQ-----NITGLAYSYHSSPFLASISEDC 292 (357)
T ss_dssp CC-SCEEEEEECTTSTTEEEEEESS------SCEEEEESSCGGGCEEECCCSS-----CEEEEEECSSSSCCEEEEETTS
T ss_pred cc-ccccchhhhhcccceEEEeecc------cceeEEECCCCcEeEEEeccce-----eEEEEEEcCCCCCEEEEEeCCC
Confidence 00 11112322 23444443333 36888999876532 2232222 22233333 44 4444444343
Q ss_pred CCCCCcEEEEEeccCCCCCceEEEEEeccCCCceeeEEEEec-CCcEEEEEeeCCeEEEEeCCCC
Q 017748 269 DDDDRPWDLWVMKEYGVNDSWTKLATLLNVGGGNVKPLVYSR-SEDKVLLHAVRGDLCWYDLERH 332 (366)
Q Consensus 269 ~~~~~~l~iW~l~~~~~~~~W~~~~~i~~~~~~~~~~~~~~~-~g~~i~~~~~~~~~~~yd~~t~ 332 (366)
.+.||-++. -..+..+..... ..-+++.+ ++..|+-...|+.+..||+.+.
T Consensus 293 -----~i~iwd~~~------~~~~~~~~H~~~--V~~vafsP~d~~~l~s~s~Dg~v~iW~~~~~ 344 (357)
T 4g56_B 293 -----TVAVLDADF------SEVFRDLSHRDF--VTGVAWSPLDHSKFTTVGWDHKVLHHHLPSE 344 (357)
T ss_dssp -----CEEEECTTS------CEEEEECCCSSC--EEEEEECSSSTTEEEEEETTSCEEEEECC--
T ss_pred -----EEEEEECCC------CcEeEECCCCCC--EEEEEEeCCCCCEEEEEcCCCeEEEEECCCC
Confidence 899997654 122333332221 44456665 5645555667778999998654
|
| >2aq5_A Coronin-1A; WD40 repeat, 7-bladed beta-propeller, structural protein; HET: CME; 1.75A {Mus musculus} PDB: 2b4e_A | Back alignment and structure |
|---|
Probab=90.03 E-value=9.8 Score=33.73 Aligned_cols=200 Identities=12% Similarity=0.055 Sum_probs=99.5
Q ss_pred eEEeecCCccEEEEEeccccceeecC-CcCCCCCCCCcceEEEeeecCCCCeEEEEEEEEcCCCCccEEEEEEecCCcEE
Q 017748 109 LLALEDSRRNIMLLLNPLTKRHRVLP-TFYRDLSRCVPSLEGFGFDVGSGDFKLVKILAFGKPMNYTEVAVFSLRVNSWR 187 (366)
Q Consensus 109 ll~~~~~~~~~~~V~NP~t~~~~~LP-~~~~~~~~~~~~~~~lg~d~~~~~ykvv~~~~~~~~~~~~~~~vyss~t~~W~ 187 (366)
+++....+..+. |||..+++...-. .+.............+.+.|....+ ++.... ...+.+++..++...
T Consensus 96 ~l~s~s~dg~v~-vw~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~-l~s~~~------dg~i~iwd~~~~~~~ 167 (402)
T 2aq5_A 96 VIASGSEDCTVM-VWEIPDGGLVLPLREPVITLEGHTKRVGIVAWHPTAQNV-LLSAGC------DNVILVWDVGTGAAV 167 (402)
T ss_dssp EEEEEETTSEEE-EEECCTTCCSSCBCSCSEEEECCSSCEEEEEECSSBTTE-EEEEET------TSCEEEEETTTTEEE
T ss_pred EEEEEeCCCeEE-EEEccCCCCccccCCceEEecCCCCeEEEEEECcCCCCE-EEEEcC------CCEEEEEECCCCCcc
Confidence 444444556677 8998876432100 0000000001234456666653332 332221 446889998877553
Q ss_pred E-c--cCCCcceecCCcceEE--CCcEEEEEeeCCCCCCCcEEEEEECCCceeeee--CCCCccCCCCceEEEEEE-CCe
Q 017748 188 R-I--QDFPYFWVTGTCSVFV--NGALHWTAALNQDADRNDIIIAFDLKSEEFYQV--PLPPIVGIEGYYILLEAL-GGC 259 (366)
Q Consensus 188 ~-~--~~~~~~~~~~~~~v~~--~G~lYw~~~~~~~~~~~~~i~~fD~~~~~~~~i--~lP~~~~~~~~~~~l~~~-~g~ 259 (366)
. + ...... -.++.+ +|.....+..+ ..|..+|+.+.+.... ..+... ....+... +|+
T Consensus 168 ~~~~~~~~~~~----v~~~~~~~~~~~l~~~~~d------~~i~iwd~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~ 233 (402)
T 2aq5_A 168 LTLGPDVHPDT----IYSVDWSRDGALICTSCRD------KRVRVIEPRKGTVVAEKDRPHEGT----RPVHAVFVSEGK 233 (402)
T ss_dssp EEECTTTCCSC----EEEEEECTTSSCEEEEETT------SEEEEEETTTTEEEEEEECSSCSS----SCCEEEECSTTE
T ss_pred EEEecCCCCCc----eEEEEECCCCCEEEEEecC------CcEEEEeCCCCceeeeeccCCCCC----cceEEEEcCCCc
Confidence 2 2 111111 112222 46555555443 3799999998665332 222211 11223333 566
Q ss_pred EEEEEeecCCCCCCcEEEEEeccCCCCCceEEEEEeccCCCceeeEEEEecCCcEEEEEe-eCCeEEEEeCCCCe--EEE
Q 017748 260 LCLLCKFDDDDDDRPWDLWVMKEYGVNDSWTKLATLLNVGGGNVKPLVYSRSEDKVLLHA-VRGDLCWYDLERHR--VRS 336 (366)
Q Consensus 260 L~l~~~~~~~~~~~~l~iW~l~~~~~~~~W~~~~~i~~~~~~~~~~~~~~~~g~~i~~~~-~~~~~~~yd~~t~~--~~~ 336 (366)
+.+++.... ....+.+|-+..... =.....++.... ..-+.+..++..+++.. .++.+.+||+++++ ...
T Consensus 234 ~l~~g~~~~--~d~~i~iwd~~~~~~---~~~~~~~~~~~~--v~~~~~s~~~~~l~~~g~~dg~i~i~d~~~~~~~~~~ 306 (402)
T 2aq5_A 234 ILTTGFSRM--SERQVALWDTKHLEE---PLSLQELDTSSG--VLLPFFDPDTNIVYLCGKGDSSIRYFEITSEAPFLHY 306 (402)
T ss_dssp EEEEEECTT--CCEEEEEEETTBCSS---CSEEEECCCCSS--CEEEEEETTTTEEEEEETTCSCEEEEEECSSTTCEEE
T ss_pred EEEEeccCC--CCceEEEEcCccccC---CceEEeccCCCc--eeEEEEcCCCCEEEEEEcCCCeEEEEEecCCCcceEe
Confidence 666553110 112899998876321 111222322221 44456777886676665 46679999999987 655
Q ss_pred e
Q 017748 337 I 337 (366)
Q Consensus 337 v 337 (366)
+
T Consensus 307 l 307 (402)
T 2aq5_A 307 L 307 (402)
T ss_dssp E
T ss_pred e
Confidence 5
|
| >1yr2_A Prolyl oligopeptidase; prolyl endopeptidase, mechanistic study, celiac sprue, hydro; 1.80A {Novosphingobium capsulatum} | Back alignment and structure |
|---|
Probab=89.88 E-value=16 Score=35.83 Aligned_cols=145 Identities=14% Similarity=0.021 Sum_probs=81.1
Q ss_pred ccEEEEEEecCC--c-EEEccCCCcceecCCcceE-ECCcEEEEEeeCCCCCCCcEEEEEECCC--ceeeeeCCCCccCC
Q 017748 173 YTEVAVFSLRVN--S-WRRIQDFPYFWVTGTCSVF-VNGALHWTAALNQDADRNDIIIAFDLKS--EEFYQVPLPPIVGI 246 (366)
Q Consensus 173 ~~~~~vyss~t~--~-W~~~~~~~~~~~~~~~~v~-~~G~lYw~~~~~~~~~~~~~i~~fD~~~--~~~~~i~lP~~~~~ 246 (366)
...+.+++..++ . |+.+....... ...+. -++.+|+.+.... ....|...|+++ +.|..+- |...
T Consensus 293 ~~~l~~~d~~~~~~~~~~~l~~~~~~~---~~~~~~dg~~l~~~s~~~~---~~~~l~~~d~~~~~~~~~~l~-~~~~-- 363 (741)
T 1yr2_A 293 VNTVHVARVTNGKIGPVTALIPDLKAQ---WDFVDGVGDQLWFVSGDGA---PLKKIVRVDLSGSTPRFDTVV-PESK-- 363 (741)
T ss_dssp CCEEEEEEEETTEECCCEEEECSSSSC---EEEEEEETTEEEEEECTTC---TTCEEEEEECSSSSCEEEEEE-CCCS--
T ss_pred cceEEEEECCCCCCcccEEecCCCCce---EEEEeccCCEEEEEECCCC---CCCEEEEEeCCCCccccEEEe-cCCC--
Confidence 446667777665 5 77664322111 11222 3456776665431 124799999988 5676653 3222
Q ss_pred CCceEEEEEECCeEEEEEeecCCCCCCcEEEEEeccCCCCCceEEEEEeccCCCceeeEEEEecCCcEEEEEeeC----C
Q 017748 247 EGYYILLEALGGCLCLLCKFDDDDDDRPWDLWVMKEYGVNDSWTKLATLLNVGGGNVKPLVYSRSEDKVLLHAVR----G 322 (366)
Q Consensus 247 ~~~~~~l~~~~g~L~l~~~~~~~~~~~~l~iW~l~~~~~~~~W~~~~~i~~~~~~~~~~~~~~~~g~~i~~~~~~----~ 322 (366)
.....+...++.|++....+. ...||.++-.+ . ....+.....+....+++..+++.|++.... .
T Consensus 364 -~~l~~~~~~~~~lv~~~~~dg-----~~~l~~~~~~g--~---~~~~l~~~~~~~v~~~~~s~d~~~l~~~~ss~~~P~ 432 (741)
T 1yr2_A 364 -DNLESVGIAGNRLFASYIHDA-----KSQVLAFDLDG--K---PAGAVSLPGIGSASGLSGRPGDRHAYLSFSSFTQPA 432 (741)
T ss_dssp -SEEEEEEEEBTEEEEEEEETT-----EEEEEEEETTS--C---EEEECBCSSSCEEEEEECCBTCSCEEEEEEETTEEE
T ss_pred -CeEEEEEEECCEEEEEEEECC-----EEEEEEEeCCC--C---ceeeccCCCCeEEEEeecCCCCCEEEEEEcCCCCCC
Confidence 112233445888888777665 77888887422 1 2334443211123333444566677776442 3
Q ss_pred eEEEEeCCCCeEEEe
Q 017748 323 DLCWYDLERHRVRSI 337 (366)
Q Consensus 323 ~~~~yd~~t~~~~~v 337 (366)
.++.||+.+++.+.+
T Consensus 433 ~i~~~d~~tg~~~~l 447 (741)
T 1yr2_A 433 TVLALDPATAKTTPW 447 (741)
T ss_dssp EEEEEETTTTEEEEC
T ss_pred EEEEEECCCCcEEEE
Confidence 599999999987655
|
| >3v9f_A Two-component system sensor histidine kinase/RESP regulator, hybrid (ONE-component...; beta-propeller, beta-sandwich; 3.30A {Bacteroides thetaiotaomicron} | Back alignment and structure |
|---|
Probab=89.74 E-value=16 Score=35.91 Aligned_cols=194 Identities=13% Similarity=0.049 Sum_probs=97.2
Q ss_pred ceeEEeecCCccEEEEEeccccceeecCCcCCCCCCCCcceEEEeeecCCCCeEEEEEEEEcCCCCccEEEEEEecCCcE
Q 017748 107 NGLLALEDSRRNIMLLLNPLTKRHRVLPTFYRDLSRCVPSLEGFGFDVGSGDFKLVKILAFGKPMNYTEVAVFSLRVNSW 186 (366)
Q Consensus 107 ~Gll~~~~~~~~~~~V~NP~t~~~~~LP~~~~~~~~~~~~~~~lg~d~~~~~ykvv~~~~~~~~~~~~~~~vyss~t~~W 186 (366)
+|-|.+......++ .+||.|+++..++..... .....++..|+.. + +.+.. ...+..|+..++.|
T Consensus 417 ~g~lWigt~~~Gl~-~~~~~~~~~~~~~~~~~~----~~~v~~i~~d~~g---~-lwigt------~~Gl~~~~~~~~~~ 481 (781)
T 3v9f_A 417 EGNLWFGTYLGNIS-YYNTRLKKFQIIELEKNE----LLDVRVFYEDKNK---K-IWIGT------HAGVFVIDLASKKV 481 (781)
T ss_dssp TSCEEEEETTEEEE-EECSSSCEEEECCSTTTC----CCCEEEEEECTTS---E-EEEEE------TTEEEEEESSSSSC
T ss_pred CCCEEEEeccCCEE-EEcCCCCcEEEeccCCCC----CCeEEEEEECCCC---C-EEEEE------CCceEEEeCCCCeE
Confidence 34333333234566 778887777766543111 1123334444321 1 22222 24678888888888
Q ss_pred EEccCCCc-ce-ecCCcceEE--CCcEEEEEeeCCCCCCCcEEEEEECCCceeeeeCCCCccCCCCceEEEEE-ECCeEE
Q 017748 187 RRIQDFPY-FW-VTGTCSVFV--NGALHWTAALNQDADRNDIIIAFDLKSEEFYQVPLPPIVGIEGYYILLEA-LGGCLC 261 (366)
Q Consensus 187 ~~~~~~~~-~~-~~~~~~v~~--~G~lYw~~~~~~~~~~~~~i~~fD~~~~~~~~i~lP~~~~~~~~~~~l~~-~~g~L~ 261 (366)
+.....+. .. .....+++. +|. .|++..+ ..+..||..++++..+..+.... ......+.+ .+|.|+
T Consensus 482 ~~~~~~~~~~~~~~~i~~i~~d~~g~-lWigt~~------~Gl~~~~~~~~~~~~~~~~~~l~-~~~i~~i~~d~~g~lW 553 (781)
T 3v9f_A 482 IHHYDTSNSQLLENFVRSIAQDSEGR-FWIGTFG------GGVGIYTPDMQLVRKFNQYEGFC-SNTINQIYRSSKGQMW 553 (781)
T ss_dssp CEEECTTTSSCSCSCEEEEEECTTCC-EEEEESS------SCEEEECTTCCEEEEECTTTTCS-CSCEEEEEECTTSCEE
T ss_pred EecccCcccccccceeEEEEEcCCCC-EEEEEcC------CCEEEEeCCCCeEEEccCCCCCC-CCeeEEEEECCCCCEE
Confidence 76543220 00 011113333 355 4666543 15899999999988875443331 112334444 367888
Q ss_pred EEEeecCCCCCCcEEEEEeccCCCCCceEEEEEeccCCCceeeEEEEe--cCCcEEEEEeeCCeEEEEeCCCCeEEEe
Q 017748 262 LLCKFDDDDDDRPWDLWVMKEYGVNDSWTKLATLLNVGGGNVKPLVYS--RSEDKVLLHAVRGDLCWYDLERHRVRSI 337 (366)
Q Consensus 262 l~~~~~~~~~~~~l~iW~l~~~~~~~~W~~~~~i~~~~~~~~~~~~~~--~~g~~i~~~~~~~~~~~yd~~t~~~~~v 337 (366)
+.+. . .+ +..++.. ..++... .... .+....+.++. .+| .|.+....+ +..||+++++++..
T Consensus 554 i~T~-~------Gl-v~~~d~~--~~~~~~~-~~~~-gl~~~~i~~i~~d~~g-~lW~~t~~G-l~~~~~~~~~~~~~ 617 (781)
T 3v9f_A 554 LATG-E------GL-VCFPSAR--NFDYQVF-QRKE-GLPNTHIRAISEDKNG-NIWASTNTG-ISCYITSKKCFYTY 617 (781)
T ss_dssp EEET-T------EE-EEESCTT--TCCCEEE-CGGG-TCSCCCCCEEEECSSS-CEEEECSSC-EEEEETTTTEEEEE
T ss_pred EEEC-C------Cc-eEEECCC--CCcEEEc-cccC-CCCCceEEEEEECCCC-CEEEEcCCc-eEEEECCCCceEEe
Confidence 7654 2 22 1233321 1223222 1111 11011122333 344 788887655 99999999998877
|
| >4aow_A Guanine nucleotide-binding protein subunit beta-2; receptor, WD-repeat, beta-propeller; 2.45A {Homo sapiens} PDB: 2zkq_a | Back alignment and structure |
|---|
Probab=89.48 E-value=9.2 Score=32.60 Aligned_cols=93 Identities=9% Similarity=0.028 Sum_probs=49.7
Q ss_pred EEEEEECCCceeeee-CCCCccCCCCceEEEEEECCeEEEEEeecCCCCCCcEEEEEeccCCCCCceEEEEEeccC----
Q 017748 224 IIIAFDLKSEEFYQV-PLPPIVGIEGYYILLEALGGCLCLLCKFDDDDDDRPWDLWVMKEYGVNDSWTKLATLLNV---- 298 (366)
Q Consensus 224 ~i~~fD~~~~~~~~i-~lP~~~~~~~~~~~l~~~~g~L~l~~~~~~~~~~~~l~iW~l~~~~~~~~W~~~~~i~~~---- 298 (366)
.|..+|+.+.+.... ..+. ....+....+...++...+. .+.||-++.. ..+..+...
T Consensus 238 ~i~iwd~~~~~~~~~~~~~~------~v~~~~~~~~~~~~~~~~d~-----~i~iwd~~~~------~~~~~~~~~~~~~ 300 (340)
T 4aow_A 238 QAMLWDLNEGKHLYTLDGGD------IINALCFSPNRYWLCAATGP-----SIKIWDLEGK------IIVDELKQEVIST 300 (340)
T ss_dssp EEEEEETTTTEEEEEEECSS------CEEEEEECSSSSEEEEEETT-----EEEEEETTTT------EEEEEECCC----
T ss_pred eEEEEEeccCceeeeecCCc------eEEeeecCCCCceeeccCCC-----EEEEEECCCC------eEEEeccccceee
Confidence 788899987654322 2221 12233333444444455444 8899977642 111112110
Q ss_pred ---C-CceeeEEEEecCCcEEEEEeeCCeEEEEeCCCCe
Q 017748 299 ---G-GGNVKPLVYSRSEDKVLLHAVRGDLCWYDLERHR 333 (366)
Q Consensus 299 ---~-~~~~~~~~~~~~g~~i~~~~~~~~~~~yd~~t~~ 333 (366)
. .....-+++.++|..|+-...|+.+..||++|++
T Consensus 301 ~~~~h~~~v~~l~~s~dg~~l~sgs~Dg~v~iW~~~tGt 339 (340)
T 4aow_A 301 SSKAEPPQCTSLAWSADGQTLFAGYTDNLVRVWQVTIGT 339 (340)
T ss_dssp ---CCCCCEEEEEECTTSSEEEEEETTSCEEEEEEEC--
T ss_pred eccCCCCCEEEEEECCCCCEEEEEeCCCEEEEEeCCCcC
Confidence 0 0113445677788566666677789999999875
|
| >4gga_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; 2.04A {Homo sapiens} PDB: 4ggd_A | Back alignment and structure |
|---|
Probab=89.45 E-value=11 Score=33.64 Aligned_cols=202 Identities=14% Similarity=0.126 Sum_probs=104.3
Q ss_pred EEEe-eeceeEEeecCCccEEEEEeccccceeecCCcCCCCCCCCcceEEEeeecCCCCeEEEEEEEEcCCCCccEEEEE
Q 017748 101 FIIG-SCNGLLALEDSRRNIMLLLNPLTKRHRVLPTFYRDLSRCVPSLEGFGFDVGSGDFKLVKILAFGKPMNYTEVAVF 179 (366)
Q Consensus 101 ~~~~-s~~Gll~~~~~~~~~~~V~NP~t~~~~~LP~~~~~~~~~~~~~~~lg~d~~~~~ykvv~~~~~~~~~~~~~~~vy 179 (366)
.+++ |++++|.+.. +..++ |||..|++...+-....+ ......+.+.+. +.|-+++- ....+.++
T Consensus 109 ~~l~wS~~n~lAvgl-d~tV~-lWd~~tg~~~~~~~~~~~----~~~V~sv~fspd-g~~lasgs-------~Dg~v~iW 174 (420)
T 4gga_A 109 NLVDWSSGNVLAVAL-DNSVY-LWSASSGDILQLLQMEQP----GEYISSVAWIKE-GNYLAVGT-------SSAEVQLW 174 (420)
T ss_dssp BCEEECTTSEEEEEE-TTEEE-EEETTTCCEEEEEECCST----TCCEEEEEECTT-SSEEEEEE-------TTSCEEEE
T ss_pred eeEEECCCCEEEEEe-CCEEE-EEECCCCCEEEEEEecCC----CCcEEEEEECCC-CCEEEEEE-------CCCeEEEE
Confidence 3444 3466665553 56799 999999987765433222 123456666664 34433332 14568888
Q ss_pred EecCCcEE-EccCCCcceecCCcceEECCcEEEEEeeCCCCCCCcEEEEEECCCceeeeeCCCCccCCCCceEEEEEE-C
Q 017748 180 SLRVNSWR-RIQDFPYFWVTGTCSVFVNGALHWTAALNQDADRNDIIIAFDLKSEEFYQVPLPPIVGIEGYYILLEAL-G 257 (366)
Q Consensus 180 ss~t~~W~-~~~~~~~~~~~~~~~v~~~G~lYw~~~~~~~~~~~~~i~~fD~~~~~~~~i~lP~~~~~~~~~~~l~~~-~ 257 (366)
+..++.-. ....-. ....++..+|.+-..+... ..+..+|..........+.... .....+... +
T Consensus 175 d~~~~~~~~~~~~h~----~~v~~~s~~~~~l~sgs~d------~~i~~~d~~~~~~~~~~~~~h~---~~~~~~~~~~~ 241 (420)
T 4gga_A 175 DVQQQKRLRNMTSHS----ARVGSLSWNSYILSSGSRS------GHIHHHDVRVAEHHVATLSGHS---QEVCGLRWAPD 241 (420)
T ss_dssp ETTTTEEEEEECCCS----SCEEEEEEETTEEEEEETT------SEEEEEETTSSSCEEEEEECCS---SCEEEEEECTT
T ss_pred EcCCCcEEEEEeCCC----CceEEEeeCCCEEEEEeCC------CceeEeeecccceeeEEecccc---cceeeeeecCC
Confidence 88776432 111111 1112345566655444433 3788888876544332222211 112222332 4
Q ss_pred CeEEEEEeecCCCCCCcEEEEEeccCCCCCceEEEEEeccCCCceeeEEEEecCCcEEEEEe---eCCeEEEEeCCCCeE
Q 017748 258 GCLCLLCKFDDDDDDRPWDLWVMKEYGVNDSWTKLATLLNVGGGNVKPLVYSRSEDKVLLHA---VRGDLCWYDLERHRV 334 (366)
Q Consensus 258 g~L~l~~~~~~~~~~~~l~iW~l~~~~~~~~W~~~~~i~~~~~~~~~~~~~~~~g~~i~~~~---~~~~~~~yd~~t~~~ 334 (366)
|+..+....+. .+.||...... ..+..+....... ....-+++...+..++... .|+.+..||+.+++.
T Consensus 242 g~~l~s~~~D~-----~v~i~~~~~~~--~~~~~~~~~~~~~-~~V~~~~~~p~~~~~la~~~gs~D~~I~iwd~~t~~~ 313 (420)
T 4gga_A 242 GRHLASGGNDN-----LVNVWPSAPGE--GGWVPLQTFTQHQ-GAVKAVAWCPWQSNVLATGGGTSDRHIRIWNVCSGAC 313 (420)
T ss_dssp SSEEEEEETTS-----CEEEEESSCCS--SCSCCSEEECCCS-SCEEEEEECTTCTTEEEEEECTTTCEEEEEETTTTEE
T ss_pred CCeeeeeeccc-----cceEEeecccc--ccceeeeeecccC-CceeeeeeCCCcccEEEEEeecCCCEEEEEeCCcccc
Confidence 66555555444 89999887632 2222222222111 1134445555444454432 355699999999887
Q ss_pred EEe
Q 017748 335 RSI 337 (366)
Q Consensus 335 ~~v 337 (366)
...
T Consensus 314 ~~~ 316 (420)
T 4gga_A 314 LSA 316 (420)
T ss_dssp EEE
T ss_pred cee
Confidence 655
|
| >1k8k_C P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-propeller, structural protein; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1tyq_C* 1u2v_C* 2p9i_C* 2p9k_C* 2p9l_C 2p9n_C* 2p9p_C* 2p9s_C* 2p9u_C* 3rse_C 3dxm_C* 3dxk_C | Back alignment and structure |
|---|
Probab=89.36 E-value=10 Score=32.87 Aligned_cols=68 Identities=9% Similarity=-0.017 Sum_probs=42.6
Q ss_pred CCeEEEEEeecCCCCCCcEEEEEeccCCCCCceEEEEEeccCCCceeeEEEEecCCcEEEEEeeCCeEEEEeCCC--CeE
Q 017748 257 GGCLCLLCKFDDDDDDRPWDLWVMKEYGVNDSWTKLATLLNVGGGNVKPLVYSRSEDKVLLHAVRGDLCWYDLER--HRV 334 (366)
Q Consensus 257 ~g~L~l~~~~~~~~~~~~l~iW~l~~~~~~~~W~~~~~i~~~~~~~~~~~~~~~~g~~i~~~~~~~~~~~yd~~t--~~~ 334 (366)
+|++.++...+. .+.+|-++... .+..+.... ....-+++..++ .++....++.+..||+.+ ++|
T Consensus 213 ~~~~l~~~~~d~-----~i~i~d~~~~~------~~~~~~~~~-~~v~~~~~~~~~-~~l~~~~d~~i~i~~~~~~~~~~ 279 (372)
T 1k8k_C 213 NGSRVAWVSHDS-----TVCLADADKKM------AVATLASET-LPLLAVTFITES-SLVAAGHDCFPVLFTYDSAAGKL 279 (372)
T ss_dssp SSSEEEEEETTT-----EEEEEEGGGTT------EEEEEECSS-CCEEEEEEEETT-EEEEEETTSSCEEEEEETTTTEE
T ss_pred CCCEEEEEeCCC-----EEEEEECCCCc------eeEEEccCC-CCeEEEEEecCC-CEEEEEeCCeEEEEEccCcCceE
Confidence 455555555444 89999987631 233333221 113445666777 666666777799999999 888
Q ss_pred EEe
Q 017748 335 RSI 337 (366)
Q Consensus 335 ~~v 337 (366)
+.+
T Consensus 280 ~~~ 282 (372)
T 1k8k_C 280 SFG 282 (372)
T ss_dssp EEC
T ss_pred EEe
Confidence 765
|
| >3nol_A Glutamine cyclotransferase; beta-propeller, glutaminyl cyclase, pyrogl transferase; 1.70A {Zymomonas mobilis} PDB: 3nom_A | Back alignment and structure |
|---|
Probab=89.28 E-value=8.8 Score=32.34 Aligned_cols=142 Identities=8% Similarity=-0.032 Sum_probs=80.4
Q ss_pred ccEEEEEEecCCcEEEccCCCcceecCCcc-eEECCcEEEEEeeCCCCCCCcEEEEEECCCcee-eeeCCCCccCCCCce
Q 017748 173 YTEVAVFSLRVNSWRRIQDFPYFWVTGTCS-VFVNGALHWTAALNQDADRNDIIIAFDLKSEEF-YQVPLPPIVGIEGYY 250 (366)
Q Consensus 173 ~~~~~vyss~t~~W~~~~~~~~~~~~~~~~-v~~~G~lYw~~~~~~~~~~~~~i~~fD~~~~~~-~~i~lP~~~~~~~~~ 250 (366)
...+.+++..++.=...-.++.. .+..+ ...++.+|-++... ..+.+||.++.+- ..++.|...
T Consensus 64 ~S~v~~vD~~Tgkv~~~~~l~~~--~FgeGit~~g~~ly~ltw~~------~~v~v~D~~t~~~~~ti~~~~eG------ 129 (262)
T 3nol_A 64 RSSIRKVDIESGKTLQQIELGKR--YFGEGISDWKDKIVGLTWKN------GLGFVWNIRNLRQVRSFNYDGEG------ 129 (262)
T ss_dssp EEEEEEECTTTCCEEEEEECCTT--CCEEEEEEETTEEEEEESSS------SEEEEEETTTCCEEEEEECSSCC------
T ss_pred CceEEEEECCCCcEEEEEecCCc--cceeEEEEeCCEEEEEEeeC------CEEEEEECccCcEEEEEECCCCc------
Confidence 45788888888753222122221 11223 34567888876554 4899999987554 556665422
Q ss_pred EEEEEECCeEEEEEeecCCCCCCcEEEEEeccCCCCCceEEEEEeccCCC--ceee--EEEEecCCcEEEEEee-CCeEE
Q 017748 251 ILLEALGGCLCLLCKFDDDDDDRPWDLWVMKEYGVNDSWTKLATLLNVGG--GNVK--PLVYSRSEDKVLLHAV-RGDLC 325 (366)
Q Consensus 251 ~~l~~~~g~L~l~~~~~~~~~~~~l~iW~l~~~~~~~~W~~~~~i~~~~~--~~~~--~~~~~~~g~~i~~~~~-~~~~~ 325 (366)
.-++.-+++|++... . =.||.+|... =..+.+|..... .... -+.+ .+| +|+.... .+.+.
T Consensus 130 ~glt~dg~~L~~SdG-s-------~~i~~iDp~T----~~v~~~I~V~~~g~~~~~lNELe~-~~G-~lyan~w~~~~I~ 195 (262)
T 3nol_A 130 WGLTHNDQYLIMSDG-T-------PVLRFLDPES----LTPVRTITVTAHGEELPELNELEW-VDG-EIFANVWQTNKIV 195 (262)
T ss_dssp CCEEECSSCEEECCS-S-------SEEEEECTTT----CSEEEEEECEETTEECCCEEEEEE-ETT-EEEEEETTSSEEE
T ss_pred eEEecCCCEEEEECC-C-------CeEEEEcCCC----CeEEEEEEeccCCccccccceeEE-ECC-EEEEEEccCCeEE
Confidence 224444667777653 2 1377777531 223444443211 0011 1233 255 8887764 45699
Q ss_pred EEeCCCCeEEEeeeecC
Q 017748 326 WYDLERHRVRSIVEIDD 342 (366)
Q Consensus 326 ~yd~~t~~~~~v~~~~~ 342 (366)
..|++|++.....++.+
T Consensus 196 vIDp~tG~V~~~Id~~~ 212 (262)
T 3nol_A 196 RIDPETGKVTGIIDLNG 212 (262)
T ss_dssp EECTTTCBEEEEEECTT
T ss_pred EEECCCCcEEEEEECCc
Confidence 99999999876657753
|
| >2bkl_A Prolyl endopeptidase; mechanistic study, celiac sprue, hydrolase, protease; HET: ZAH MES; 1.5A {Myxococcus xanthus} | Back alignment and structure |
|---|
Probab=89.22 E-value=17 Score=35.27 Aligned_cols=192 Identities=13% Similarity=0.034 Sum_probs=99.2
Q ss_pred cEEEEEecccccee--ecCCcCCCCCCCCcceEEEeeecCCCCeEEEEEEEEcCCCCccEEEEEEecCCcEEEccCCCcc
Q 017748 118 NIMLLLNPLTKRHR--VLPTFYRDLSRCVPSLEGFGFDVGSGDFKLVKILAFGKPMNYTEVAVFSLRVNSWRRIQDFPYF 195 (366)
Q Consensus 118 ~~~~V~NP~t~~~~--~LP~~~~~~~~~~~~~~~lg~d~~~~~ykvv~~~~~~~~~~~~~~~vyss~t~~W~~~~~~~~~ 195 (366)
+++ +++.-|++.. .+-..+.. ........+.+. ++|-++.... . .....+.+++..++.|+.+......
T Consensus 203 ~v~-~~~l~t~~~~~~lv~~~~~~----~~~~~~~~~SpD-G~~l~~~~~~-~--~~~~~l~~~~~~~~~~~~l~~~~~~ 273 (695)
T 2bkl_A 203 TIR-YHTLGTEPSKDTVVHERTGD----PTTFLQSDLSRD-GKYLFVYILR-G--WSENDVYWKRPGEKDFRLLVKGVGA 273 (695)
T ss_dssp EEE-EEETTSCGGGCEEEECCCCC----TTCEEEEEECTT-SCCEEEEEEE-T--TTEEEEEEECTTCSSCEEEEECSSC
T ss_pred EEE-EEECCCCchhceEEEecCCC----CEEEEEEEECCC-CCEEEEEEeC-C--CCceEEEEEcCCCCceEEeecCCCc
Confidence 377 8888877632 22221111 112334455554 3454444332 1 0234555555556778776432211
Q ss_pred eecCCcceEECCcEEEEEeeCCCCCCCcEEEEEECCCce---eeeeCCCCccCCCCceEEEEEECCeEEEEEeecCCCCC
Q 017748 196 WVTGTCSVFVNGALHWTAALNQDADRNDIIIAFDLKSEE---FYQVPLPPIVGIEGYYILLEALGGCLCLLCKFDDDDDD 272 (366)
Q Consensus 196 ~~~~~~~v~~~G~lYw~~~~~~~~~~~~~i~~fD~~~~~---~~~i~lP~~~~~~~~~~~l~~~~g~L~l~~~~~~~~~~ 272 (366)
....+.-+|.+|+.+.... ....|..+|+.+.. |..+..+... .....+...+++|++....+.
T Consensus 274 ---~~~~~~~~g~l~~~s~~~~---~~~~l~~~d~~~~~~~~~~~l~~~~~~---~~l~~~~~~~~~lv~~~~~dg---- 340 (695)
T 2bkl_A 274 ---KYEVHAWKDRFYVLTDEGA---PRQRVFEVDPAKPARASWKEIVPEDSS---ASLLSVSIVGGHLSLEYLKDA---- 340 (695)
T ss_dssp ---CEEEEEETTEEEEEECTTC---TTCEEEEEBTTBCSGGGCEEEECCCSS---CEEEEEEEETTEEEEEEEETT----
T ss_pred ---eEEEEecCCcEEEEECCCC---CCCEEEEEeCCCCCccCCeEEecCCCC---CeEEEEEEECCEEEEEEEECC----
Confidence 1223345677666554221 12589999997654 6655333211 012223445888888777665
Q ss_pred CcEEEEEeccCCCCCceEEEEEeccCCCceeeEEEEecCCcEEEEEeeC----CeEEEEeCCCCeEEEe
Q 017748 273 RPWDLWVMKEYGVNDSWTKLATLLNVGGGNVKPLVYSRSEDKVLLHAVR----GDLCWYDLERHRVRSI 337 (366)
Q Consensus 273 ~~l~iW~l~~~~~~~~W~~~~~i~~~~~~~~~~~~~~~~g~~i~~~~~~----~~~~~yd~~t~~~~~v 337 (366)
...||.++-.+ . ....+.....+....+++..+++.+++.... ..++.||+++++.+.+
T Consensus 341 -~~~l~~~~~~g--~---~~~~l~~~~~~~v~~~~~s~d~~~l~~~~ss~~~P~~v~~~d~~~g~~~~l 403 (695)
T 2bkl_A 341 -TSEVRVATLKG--K---PVRTVQLPGVGAASNLMGLEDLDDAYYVFTSFTTPRQIYKTSVSTGKSELW 403 (695)
T ss_dssp -EEEEEEEETTC--C---EEEECCCSSSSEECCCBSCTTCSEEEEEEEETTEEEEEEEEETTTCCEEEE
T ss_pred -EEEEEEEeCCC--C---eeEEecCCCCeEEEEeecCCCCCEEEEEEcCCCCCCEEEEEECCCCcEEEE
Confidence 78889887422 1 2334433211112222334566677776542 3499999999887665
|
| >1r5m_A SIR4-interacting protein SIF2; transcription corepressor, WD40 repeat, beta propeller; 1.55A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=89.11 E-value=11 Score=33.13 Aligned_cols=189 Identities=7% Similarity=-0.002 Sum_probs=94.8
Q ss_pred eceeEEeecCCccEEEEEeccccceeecCCcCCCCCCCCcceEEEeeecCCCCeEEEEEEEEcCCCCccEEEEEEecCCc
Q 017748 106 CNGLLALEDSRRNIMLLLNPLTKRHRVLPTFYRDLSRCVPSLEGFGFDVGSGDFKLVKILAFGKPMNYTEVAVFSLRVNS 185 (366)
Q Consensus 106 ~~Gll~~~~~~~~~~~V~NP~t~~~~~LP~~~~~~~~~~~~~~~lg~d~~~~~ykvv~~~~~~~~~~~~~~~vyss~t~~ 185 (366)
.+|.++.......+. ++|..+++....-... ......+.+.+.. .+-+.. . ....+.+|+..++.
T Consensus 216 ~~~~~~~~~~~g~i~-~~d~~~~~~~~~~~~~------~~~i~~~~~~~~~-~~l~~~-~------~d~~i~i~d~~~~~ 280 (425)
T 1r5m_A 216 DDDKFVIPGPKGAIF-VYQITEKTPTGKLIGH------HGPISVLEFNDTN-KLLLSA-S------DDGTLRIWHGGNGN 280 (425)
T ss_dssp ETTEEEEECGGGCEE-EEETTCSSCSEEECCC------SSCEEEEEEETTT-TEEEEE-E------TTSCEEEECSSSBS
T ss_pred CCCEEEEEcCCCeEE-EEEcCCCceeeeeccC------CCceEEEEECCCC-CEEEEE-c------CCCEEEEEECCCCc
Confidence 356666555566788 9998876543221111 1234456666643 222222 1 13457788876543
Q ss_pred E-EEccCCCcceecCCcceE--ECCcEEEEEeeCCCCCCCcEEEEEECCCceeeee-CCCCccCCCCceEEEEEE-CCeE
Q 017748 186 W-RRIQDFPYFWVTGTCSVF--VNGALHWTAALNQDADRNDIIIAFDLKSEEFYQV-PLPPIVGIEGYYILLEAL-GGCL 260 (366)
Q Consensus 186 W-~~~~~~~~~~~~~~~~v~--~~G~lYw~~~~~~~~~~~~~i~~fD~~~~~~~~i-~lP~~~~~~~~~~~l~~~-~g~L 260 (366)
- ..+....... ..+. -+| +.+....+ ..|..+|+.+.+.... ..+.. ....+... +|++
T Consensus 281 ~~~~~~~~~~~i----~~~~~~~~~--~l~~~~~d-----~~i~i~d~~~~~~~~~~~~~~~-----~i~~~~~s~~~~~ 344 (425)
T 1r5m_A 281 SQNCFYGHSQSI----VSASWVGDD--KVISCSMD-----GSVRLWSLKQNTLLALSIVDGV-----PIFAGRISQDGQK 344 (425)
T ss_dssp CSEEECCCSSCE----EEEEEETTT--EEEEEETT-----SEEEEEETTTTEEEEEEECTTC-----CEEEEEECTTSSE
T ss_pred cceEecCCCccE----EEEEECCCC--EEEEEeCC-----CcEEEEECCCCcEeEecccCCc-----cEEEEEEcCCCCE
Confidence 2 1111111111 1121 245 33333322 3799999987664332 32221 12233333 4666
Q ss_pred EEEEeecCCCCCCcEEEEEeccCCC---------CCc-----eEEEEEeccCCCc-eeeEEEEecCCcEEEEEeeCCeEE
Q 017748 261 CLLCKFDDDDDDRPWDLWVMKEYGV---------NDS-----WTKLATLLNVGGG-NVKPLVYSRSEDKVLLHAVRGDLC 325 (366)
Q Consensus 261 ~l~~~~~~~~~~~~l~iW~l~~~~~---------~~~-----W~~~~~i~~~~~~-~~~~~~~~~~g~~i~~~~~~~~~~ 325 (366)
.++...+. .+.+|.++.... ... ...+..+.....+ ...-+.+..++..|+....++.+.
T Consensus 345 l~~~~~dg-----~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~ 419 (425)
T 1r5m_A 345 YAVAFMDG-----QVNVYDLKKLNSKSRSLYGNRDGILNPLPIPLYASYQSSQDNDYIFDLSWNCAGNKISVAYSLQEGS 419 (425)
T ss_dssp EEEEETTS-----CEEEEECHHHHC--------------CEECCEEEEECCTTCCCCEEEEEECTTSSEEEEEESSSCCE
T ss_pred EEEEECCC-----eEEEEECCCCccceeeeecccccccCcccchhhhhhcCcccCCceEEEEccCCCceEEEEecCceEE
Confidence 66555444 899999875320 001 1133444332101 245566677776666677777799
Q ss_pred EEeCC
Q 017748 326 WYDLE 330 (366)
Q Consensus 326 ~yd~~ 330 (366)
.||++
T Consensus 420 iw~~~ 424 (425)
T 1r5m_A 420 VVAIP 424 (425)
T ss_dssp EEECC
T ss_pred EEeec
Confidence 99986
|
| >1nir_A Nitrite reductase; hemoprotein, denitrification, domain swapping; HET: HEC DHE; 2.15A {Pseudomonas aeruginosa} SCOP: a.3.1.2 b.70.2.1 PDB: 1bl9_A* 1n15_A* 1n50_A* 1n90_A* 1gjq_A* 1nno_A* 1hzv_A* 1hzu_A* | Back alignment and structure |
|---|
Probab=88.98 E-value=15 Score=34.48 Aligned_cols=198 Identities=13% Similarity=0.051 Sum_probs=103.3
Q ss_pred ceeEEeec-CCccEEEEEeccccceee-cCCcCCCCCCCCcceEEEeeecCCCCeEEEEEEEEcCCCCccEEEEEEe--c
Q 017748 107 NGLLALED-SRRNIMLLLNPLTKRHRV-LPTFYRDLSRCVPSLEGFGFDVGSGDFKLVKILAFGKPMNYTEVAVFSL--R 182 (366)
Q Consensus 107 ~Gll~~~~-~~~~~~~V~NP~t~~~~~-LP~~~~~~~~~~~~~~~lg~d~~~~~ykvv~~~~~~~~~~~~~~~vyss--~ 182 (366)
+|.+++.. ....+. |+|+.|++... ++... ...++.++|. ++|-.+.- . ...+.+|+. .
T Consensus 148 ~~~~~vs~~~d~~V~-v~D~~t~~~~~~i~~g~--------~~~~v~~spd-g~~l~v~~----~---d~~V~v~D~~~~ 210 (543)
T 1nir_A 148 PNLFSVTLRDAGQIA-LVDGDSKKIVKVIDTGY--------AVHISRMSAS-GRYLLVIG----R---DARIDMIDLWAK 210 (543)
T ss_dssp GGEEEEEEGGGTEEE-EEETTTCCEEEEEECST--------TEEEEEECTT-SCEEEEEE----T---TSEEEEEETTSS
T ss_pred CCEEEEEEcCCCeEE-EEECCCceEEEEEecCc--------ccceEEECCC-CCEEEEEC----C---CCeEEEEECcCC
Confidence 55655554 445677 99999987643 33111 1335666664 33433331 1 267888988 5
Q ss_pred CCcEEEccCCCcceecCCcceEE------CCcEEEEEeeCCCCCCCcEEEEEECCCcee-eeeCCCCcc-C----C-CCc
Q 017748 183 VNSWRRIQDFPYFWVTGTCSVFV------NGALHWTAALNQDADRNDIIIAFDLKSEEF-YQVPLPPIV-G----I-EGY 249 (366)
Q Consensus 183 t~~W~~~~~~~~~~~~~~~~v~~------~G~lYw~~~~~~~~~~~~~i~~fD~~~~~~-~~i~lP~~~-~----~-~~~ 249 (366)
++.- +..++.... ..++.+ +|..-+.+.... ..|..+|..+.+. ..++.+... . + ...
T Consensus 211 t~~~--~~~i~~g~~--p~~va~sp~~~~dg~~l~v~~~~~-----~~v~v~D~~t~~~~~~i~~~g~~~~~~~~~~~~~ 281 (543)
T 1nir_A 211 EPTK--VAEIKIGIE--ARSVESSKFKGYEDRYTIAGAYWP-----PQFAIMDGETLEPKQIVSTRGMTVDTQTYHPEPR 281 (543)
T ss_dssp SCEE--EEEEECCSE--EEEEEECCSTTCTTTEEEEEEEES-----SEEEEEETTTCCEEEEEECCEECSSSCCEESCCC
T ss_pred CCcE--EEEEecCCC--cceEEeCCCcCCCCCEEEEEEccC-----CeEEEEeccccccceeecccCcccCccccccCCc
Confidence 5432 222221110 112222 676655555322 3789999987655 334443210 0 0 001
Q ss_pred eEEEEEE-CCeEEEEEeecCCCCCCcEEEEEeccCCCCCceEEEEEeccCCCceeeEEEEecCCcEEEEEee-CCeEEEE
Q 017748 250 YILLEAL-GGCLCLLCKFDDDDDDRPWDLWVMKEYGVNDSWTKLATLLNVGGGNVKPLVYSRSEDKVLLHAV-RGDLCWY 327 (366)
Q Consensus 250 ~~~l~~~-~g~L~l~~~~~~~~~~~~l~iW~l~~~~~~~~W~~~~~i~~~~~~~~~~~~~~~~g~~i~~~~~-~~~~~~y 327 (366)
...+... +|..+++...... .+.+|-+.+.. . .++.+++.... .+-+++..+|..++.... ++.+.++
T Consensus 282 v~~i~~s~~~~~~~vs~~~~g----~i~vvd~~~~~--~--l~~~~i~~~~~--~~~~~~spdg~~l~va~~~~~~v~v~ 351 (543)
T 1nir_A 282 VAAIIASHEHPEFIVNVKETG----KVLLVNYKDID--N--LTVTSIGAAPF--LHDGGWDSSHRYFMTAANNSNKVAVI 351 (543)
T ss_dssp EEEEEECSSSSEEEEEETTTT----EEEEEECTTSS--S--CEEEEEECCSS--CCCEEECTTSCEEEEEEGGGTEEEEE
T ss_pred eEEEEECCCCCEEEEEECCCC----eEEEEEecCCC--c--ceeEEeccCcC--ccCceECCCCCEEEEEecCCCeEEEE
Confidence 2233333 2444444443332 66666655421 1 12335554333 556788888855666543 5679999
Q ss_pred eCCCCeEEEeeee
Q 017748 328 DLERHRVRSIVEI 340 (366)
Q Consensus 328 d~~t~~~~~v~~~ 340 (366)
|+++++.....+.
T Consensus 352 D~~tg~l~~~i~~ 364 (543)
T 1nir_A 352 DSKDRRLSALVDV 364 (543)
T ss_dssp ETTTTEEEEEEEC
T ss_pred ECCCCeEEEeecc
Confidence 9999998765354
|
| >4a11_B DNA excision repair protein ERCC-8; DNA binding protein, DNA damage repair; HET: DNA; 3.31A {Homo sapiens} | Back alignment and structure |
|---|
Probab=88.97 E-value=11 Score=32.95 Aligned_cols=162 Identities=12% Similarity=0.028 Sum_probs=80.6
Q ss_pred ceEEEeeecCCCCeEEEEEEEEcCCCCccEEEEEEecCCcEEEccCCCccee-cCCcceEECCcEEEEEeeCCCCCCCcE
Q 017748 146 SLEGFGFDVGSGDFKLVKILAFGKPMNYTEVAVFSLRVNSWRRIQDFPYFWV-TGTCSVFVNGALHWTAALNQDADRNDI 224 (366)
Q Consensus 146 ~~~~lg~d~~~~~ykvv~~~~~~~~~~~~~~~vyss~t~~W~~~~~~~~~~~-~~~~~v~~~G~lYw~~~~~~~~~~~~~ 224 (366)
....+.+.+..+.+-+.+- ....+.+|+..++.-...-..+.... .......-++.+...+..+ ..
T Consensus 101 ~v~~~~~~~~~~~~l~s~~-------~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~ 167 (408)
T 4a11_B 101 SVETVQWYPHDTGMFTSSS-------FDKTLKVWDTNTLQTADVFNFEETVYSHHMSPVSTKHCLVAVGTRG------PK 167 (408)
T ss_dssp CEEEEEECTTCTTCEEEEE-------TTSEEEEEETTTTEEEEEEECSSCEEEEEECSSCSSCCEEEEEESS------SS
T ss_pred cEEEEEEccCCCcEEEEEe-------CCCeEEEeeCCCCccceeccCCCceeeeEeecCCCCCcEEEEEcCC------Ce
Confidence 4556666664444333321 14468888887765433222211111 0000011133344444333 26
Q ss_pred EEEEECCCceeee-eCCCCccCCCCceEEEEEE-CCe-EEEEEeecCCCCCCcEEEEEeccCCCCCceEEEEEecc----
Q 017748 225 IIAFDLKSEEFYQ-VPLPPIVGIEGYYILLEAL-GGC-LCLLCKFDDDDDDRPWDLWVMKEYGVNDSWTKLATLLN---- 297 (366)
Q Consensus 225 i~~fD~~~~~~~~-i~lP~~~~~~~~~~~l~~~-~g~-L~l~~~~~~~~~~~~l~iW~l~~~~~~~~W~~~~~i~~---- 297 (366)
|..+|+.+.+... +..... ....+... +|+ +.+.+..+. .+.+|-+..... .. ..+..
T Consensus 168 v~~~d~~~~~~~~~~~~~~~-----~v~~~~~~~~~~~ll~~~~~dg-----~i~i~d~~~~~~--~~---~~~~~~~~~ 232 (408)
T 4a11_B 168 VQLCDLKSGSCSHILQGHRQ-----EILAVSWSPRYDYILATASADS-----RVKLWDVRRASG--CL---ITLDQHNGK 232 (408)
T ss_dssp EEEEESSSSCCCEEECCCCS-----CEEEEEECSSCTTEEEEEETTS-----CEEEEETTCSSC--CS---EECCTTTTC
T ss_pred EEEEeCCCcceeeeecCCCC-----cEEEEEECCCCCcEEEEEcCCC-----cEEEEECCCCCc--cc---ccccccccc
Confidence 8899998765422 222111 22233333 344 555555444 899998875321 01 11100
Q ss_pred ---------CCC-ceeeEEEEecCCcEEEEEeeCCeEEEEeCCCCeEE
Q 017748 298 ---------VGG-GNVKPLVYSRSEDKVLLHAVRGDLCWYDLERHRVR 335 (366)
Q Consensus 298 ---------~~~-~~~~~~~~~~~g~~i~~~~~~~~~~~yd~~t~~~~ 335 (366)
... ....-+.+..++..++....++.+..||+++++..
T Consensus 233 ~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~ 280 (408)
T 4a11_B 233 KSQAVESANTAHNGKVNGLCFTSDGLHLLTVGTDNRMRLWNSSNGENT 280 (408)
T ss_dssp SCCCTTTSSCSCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCBC
T ss_pred cceeeccccccccCceeEEEEcCCCCEEEEecCCCeEEEEECCCCccc
Confidence 000 12444566677766777777778999999987643
|
| >3vgz_A Uncharacterized protein YNCE; beta-propeller, protein binding; 1.70A {Escherichia coli} PDB: 3vh0_A* | Back alignment and structure |
|---|
Probab=88.90 E-value=10 Score=32.49 Aligned_cols=208 Identities=11% Similarity=0.036 Sum_probs=104.6
Q ss_pred EeeeceeEEeec-CCccEEEEEecccccee-ecCCcCCCCC--CCCcceEEEeeecCCCCeEEEEEEEEcCCCCccEEEE
Q 017748 103 IGSCNGLLALED-SRRNIMLLLNPLTKRHR-VLPTFYRDLS--RCVPSLEGFGFDVGSGDFKLVKILAFGKPMNYTEVAV 178 (366)
Q Consensus 103 ~~s~~Gll~~~~-~~~~~~~V~NP~t~~~~-~LP~~~~~~~--~~~~~~~~lg~d~~~~~ykvv~~~~~~~~~~~~~~~v 178 (366)
++..+..+.+.. ....+. ++|+.|++.. .++....... .......++.+++..+ +-++. .. . ....+.+
T Consensus 96 ~s~dg~~l~v~~~~~~~v~-~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~-~l~~~-~~-~---~~~~i~~ 168 (353)
T 3vgz_A 96 INNTTQTLWFGNTVNSAVT-AIDAKTGEVKGRLVLDDRKRTEEVRPLQPRELVADDATN-TVYIS-GI-G---KESVIWV 168 (353)
T ss_dssp EETTTTEEEEEETTTTEEE-EEETTTCCEEEEEESCCCCCCSSCCCCEEEEEEEETTTT-EEEEE-EE-S---SSCEEEE
T ss_pred ECCCCCEEEEEecCCCEEE-EEeCCCCeeEEEEecCCCccccccCCCCCceEEECCCCC-EEEEE-ec-C---CCceEEE
Confidence 333444444443 456788 9999998863 3433211110 0012345677777543 32222 11 1 1345888
Q ss_pred EEecCCcEEE-ccCCCcceecCCcceEECCcEEEEEeeCCCCCCCcEEEEEECCCceee-eeCCCCccCCCCceEEEEEE
Q 017748 179 FSLRVNSWRR-IQDFPYFWVTGTCSVFVNGALHWTAALNQDADRNDIIIAFDLKSEEFY-QVPLPPIVGIEGYYILLEAL 256 (366)
Q Consensus 179 yss~t~~W~~-~~~~~~~~~~~~~~v~~~G~lYw~~~~~~~~~~~~~i~~fD~~~~~~~-~i~lP~~~~~~~~~~~l~~~ 256 (366)
++..++.=.. ++..... ...-...-+|...+++... ..|..+|+.+.+.. .+..+... .......+...
T Consensus 169 ~d~~~~~~~~~~~~~~~~--~~~~~~s~dg~~l~~~~~~------~~i~~~d~~~~~~~~~~~~~~~~-~~~~~~~~~~s 239 (353)
T 3vgz_A 169 VDGGNIKLKTAIQNTGKM--STGLALDSEGKRLYTTNAD------GELITIDTADNKILSRKKLLDDG-KEHFFINISLD 239 (353)
T ss_dssp EETTTTEEEEEECCCCTT--CCCCEEETTTTEEEEECTT------SEEEEEETTTTEEEEEEECCCSS-SCCCEEEEEEE
T ss_pred EcCCCCceEEEecCCCCc--cceEEECCCCCEEEEEcCC------CeEEEEECCCCeEEEEEEcCCCC-CCcccceEEEC
Confidence 8887654322 2101100 0111122356655555433 37889999987664 33443321 01122233443
Q ss_pred -CC-eEEEEEeecCCCCCCcEEEEEeccCCCCCceEEEEEeccCCCceeeEEEEecCCcEEEEEe-eCCeEEEEeCCCCe
Q 017748 257 -GG-CLCLLCKFDDDDDDRPWDLWVMKEYGVNDSWTKLATLLNVGGGNVKPLVYSRSEDKVLLHA-VRGDLCWYDLERHR 333 (366)
Q Consensus 257 -~g-~L~l~~~~~~~~~~~~l~iW~l~~~~~~~~W~~~~~i~~~~~~~~~~~~~~~~g~~i~~~~-~~~~~~~yd~~t~~ 333 (366)
+| .|++...... .+.+|-++. ...+..++... ..-+++..+|+.+++.. .++.+..||+++++
T Consensus 240 ~dg~~l~~~~~~~~-----~v~~~d~~~------~~~~~~~~~~~---~~~~~~s~dg~~l~v~~~~~~~v~~~d~~~~~ 305 (353)
T 3vgz_A 240 TARQRAFITDSKAA-----EVLVVDTRN------GNILAKVAAPE---SLAVLFNPARNEAYVTHRQAGKVSVIDAKSYK 305 (353)
T ss_dssp TTTTEEEEEESSSS-----EEEEEETTT------CCEEEEEECSS---CCCEEEETTTTEEEEEETTTTEEEEEETTTTE
T ss_pred CCCCEEEEEeCCCC-----EEEEEECCC------CcEEEEEEcCC---CceEEECCCCCEEEEEECCCCeEEEEECCCCe
Confidence 34 4655543222 677776544 12233333322 22366778886677776 35679999999998
Q ss_pred EEEeeee
Q 017748 334 VRSIVEI 340 (366)
Q Consensus 334 ~~~v~~~ 340 (366)
.......
T Consensus 306 ~~~~~~~ 312 (353)
T 3vgz_A 306 VVKTFDT 312 (353)
T ss_dssp EEEEEEC
T ss_pred EEEEEec
Confidence 7655344
|
| >3e5z_A Putative gluconolactonase; X-RAY NESG Q9RXN3 gluconolactonase, structural genomics, PSI protein structure initiative; 2.01A {Deinococcus radiodurans} | Back alignment and structure |
|---|
Probab=88.78 E-value=9.8 Score=32.03 Aligned_cols=199 Identities=9% Similarity=0.014 Sum_probs=101.5
Q ss_pred eEEeecCCccEEEEEeccccceeecCCcCCCCCCCCcceEEEeeecCCCCeEEEEEEEEcCCCCccEEEEEEecCCcEEE
Q 017748 109 LLALEDSRRNIMLLLNPLTKRHRVLPTFYRDLSRCVPSLEGFGFDVGSGDFKLVKILAFGKPMNYTEVAVFSLRVNSWRR 188 (366)
Q Consensus 109 ll~~~~~~~~~~~V~NP~t~~~~~LP~~~~~~~~~~~~~~~lg~d~~~~~ykvv~~~~~~~~~~~~~~~vyss~t~~W~~ 188 (366)
|+........++ .+||.++ ...+..+. ....++.+++.. . ++... .....+.+|+..++..+.
T Consensus 42 l~~~~~~~~~i~-~~~~~~~-~~~~~~~~-------~~~~~l~~~~dg-~--l~v~~-----~~~~~i~~~d~~~g~~~~ 104 (296)
T 3e5z_A 42 VIFSDVRQNRTW-AWSDDGQ-LSPEMHPS-------HHQNGHCLNKQG-H--LIACS-----HGLRRLERQREPGGEWES 104 (296)
T ss_dssp EEEEEGGGTEEE-EEETTSC-EEEEESSC-------SSEEEEEECTTC-C--EEEEE-----TTTTEEEEECSTTCCEEE
T ss_pred EEEEeCCCCEEE-EEECCCC-eEEEECCC-------CCcceeeECCCC-c--EEEEe-----cCCCeEEEEcCCCCcEEE
Confidence 455544556788 9999988 55554321 134567777643 2 22221 113468888888887766
Q ss_pred ccCCCccee-cCCcceEE--CCcEEEEEe---e-C-------CCCCCCcEEEEEECCCceeeeeCCCCccCCCCceEEEE
Q 017748 189 IQDFPYFWV-TGTCSVFV--NGALHWTAA---L-N-------QDADRNDIIIAFDLKSEEFYQVPLPPIVGIEGYYILLE 254 (366)
Q Consensus 189 ~~~~~~~~~-~~~~~v~~--~G~lYw~~~---~-~-------~~~~~~~~i~~fD~~~~~~~~i~lP~~~~~~~~~~~l~ 254 (366)
+........ .....+.+ +|.+|+... . . ........|..+|.. .+...+.-... ..-.++
T Consensus 105 ~~~~~~~~~~~~~~~i~~d~~G~l~vtd~~~g~~~~~~~~~~~~~~~~~~l~~~~~~-g~~~~~~~~~~-----~~~gi~ 178 (296)
T 3e5z_A 105 IADSFEGKKLNSPNDVCLAPDGSLWFSDPTYGIDKPEEGYGGEMELPGRWVFRLAPD-GTLSAPIRDRV-----KPNGLA 178 (296)
T ss_dssp EECEETTEECCCCCCEEECTTSCEEEEECSHHHHCGGGSSCCCCCSSSCEEEEECTT-SCEEEEECCCS-----SEEEEE
T ss_pred EeeccCCCCCCCCCCEEECCCCCEEEECCccccccccccccccccCCCcEEEEECCC-CCEEEeecCCC-----CCccEE
Confidence 532211111 11123333 577766421 0 0 000011379999988 55544421111 111233
Q ss_pred EE-CCeEEEEEeecCCCCCCcEEEEEeccCCCCCce-EEEEEeccCCCceeeEEEEecCCcEEEEEeeCCeEEEEeCCCC
Q 017748 255 AL-GGCLCLLCKFDDDDDDRPWDLWVMKEYGVNDSW-TKLATLLNVGGGNVKPLVYSRSEDKVLLHAVRGDLCWYDLERH 332 (366)
Q Consensus 255 ~~-~g~L~l~~~~~~~~~~~~l~iW~l~~~~~~~~W-~~~~~i~~~~~~~~~~~~~~~~g~~i~~~~~~~~~~~yd~~t~ 332 (366)
.. +|++. +...... .+.+|.++.. ++. .....+ ....+...-+++..+| .|++.. ++.+..||++.+
T Consensus 179 ~s~dg~~l-v~~~~~~----~i~~~~~~~~---g~~~~~~~~~-~~~~~~p~~i~~d~~G-~l~v~~-~~~v~~~~~~g~ 247 (296)
T 3e5z_A 179 FLPSGNLL-VSDTGDN----ATHRYCLNAR---GETEYQGVHF-TVEPGKTDGLRVDAGG-LIWASA-GDGVHVLTPDGD 247 (296)
T ss_dssp ECTTSCEE-EEETTTT----EEEEEEECSS---SCEEEEEEEE-CCSSSCCCSEEEBTTS-CEEEEE-TTEEEEECTTSC
T ss_pred ECCCCCEE-EEeCCCC----eEEEEEECCC---CcCcCCCeEe-eCCCCCCCeEEECCCC-CEEEEc-CCeEEEECCCCC
Confidence 33 56665 4333322 6777777632 234 333333 1111112235566666 777777 667999999977
Q ss_pred eEEEeeeecC
Q 017748 333 RVRSIVEIDD 342 (366)
Q Consensus 333 ~~~~v~~~~~ 342 (366)
..+.+ ..+.
T Consensus 248 ~~~~~-~~~~ 256 (296)
T 3e5z_A 248 ELGRV-LTPQ 256 (296)
T ss_dssp EEEEE-ECSS
T ss_pred EEEEE-ECCC
Confidence 77766 5543
|
| >3v64_C Agrin; beta propeller, laminin-G, signaling, protein binding; HET: NAG; 2.85A {Rattus norvegicus} | Back alignment and structure |
|---|
Probab=88.77 E-value=12 Score=32.91 Aligned_cols=191 Identities=12% Similarity=0.016 Sum_probs=97.8
Q ss_pred eeceeEEeec-CCccEEEEEeccccceeecCCcCCCCCCCCcceEEEeeecCCCCeEEEEEEEEcCCCCccEEEEEEecC
Q 017748 105 SCNGLLALED-SRRNIMLLLNPLTKRHRVLPTFYRDLSRCVPSLEGFGFDVGSGDFKLVKILAFGKPMNYTEVAVFSLRV 183 (366)
Q Consensus 105 s~~Gll~~~~-~~~~~~~V~NP~t~~~~~LP~~~~~~~~~~~~~~~lg~d~~~~~ykvv~~~~~~~~~~~~~~~vyss~t 183 (366)
..+|.|...+ ...++. .+++.++....+...... ...++.+|+..+. +.... . ....+++++...
T Consensus 82 ~~~~~ly~~D~~~~~I~-r~~~~g~~~~~~~~~~~~------~p~glavd~~~g~--ly~~d---~--~~~~I~~~~~dG 147 (349)
T 3v64_C 82 HRRELVFWSDVTLDRIL-RANLNGSNVEEVVSTGLE------SPGGLAVDWVHDK--LYWTD---S--GTSRIEVANLDG 147 (349)
T ss_dssp TTTTEEEEEETTTTEEE-EEETTSCSCEEEECSSCS------CCCEEEEETTTTE--EEEEE---T--TTTEEEEEETTS
T ss_pred ccccEEEEEeccCCceE-EEecCCCCceEEEeCCCC------CccEEEEecCCCe--EEEEc---C--CCCeEEEEcCCC
Confidence 3567666555 455677 888887765544322211 2346777765442 22211 1 134677777754
Q ss_pred CcEEEccCCCcceecCCcceEE---CCcEEEEEeeCCCCCCCcEEEEEECCCceeeeeCCCCccCCCCceEEEEE--ECC
Q 017748 184 NSWRRIQDFPYFWVTGTCSVFV---NGALHWTAALNQDADRNDIIIAFDLKSEEFYQVPLPPIVGIEGYYILLEA--LGG 258 (366)
Q Consensus 184 ~~W~~~~~~~~~~~~~~~~v~~---~G~lYw~~~~~~~~~~~~~i~~fD~~~~~~~~i~lP~~~~~~~~~~~l~~--~~g 258 (366)
..-+.+..-. . ....++.+ +|.+||...... ..|..+|+....-..+ ..... ...--|+. .++
T Consensus 148 ~~~~~l~~~~--l-~~P~~iavdp~~g~ly~td~~~~-----~~I~r~~~dG~~~~~~-~~~~~---~~PnGla~d~~~~ 215 (349)
T 3v64_C 148 AHRKVLLWQS--L-EKPRAIALHPMEGTIYWTDWGNT-----PRIEASSMDGSGRRII-ADTHL---FWPNGLTIDYAGR 215 (349)
T ss_dssp CSCEEEECTT--C-SCEEEEEEETTTTEEEEEECSSS-----CEEEEEETTSCSCEES-CCSSC---SCEEEEEEETTTT
T ss_pred CceEEEEeCC--C-CCcceEEEecCcCeEEEeccCCC-----CEEEEEeCCCCCcEEE-EECCC---CCcceEEEeCCCC
Confidence 4333321100 0 11124444 589999865431 3799999875433332 11111 11223444 378
Q ss_pred eEEEEEeecCCCCCCcEEEEEeccCCCCCceEEEEEeccCCCceeeEEEEecCCcEEEEEee-CCeEEEEeCCCCeEE
Q 017748 259 CLCLLCKFDDDDDDRPWDLWVMKEYGVNDSWTKLATLLNVGGGNVKPLVYSRSEDKVLLHAV-RGDLCWYDLERHRVR 335 (366)
Q Consensus 259 ~L~l~~~~~~~~~~~~l~iW~l~~~~~~~~W~~~~~i~~~~~~~~~~~~~~~~g~~i~~~~~-~~~~~~yd~~t~~~~ 335 (366)
+||++..... . |+..+-.+.. +..+-...+ ..|.++.-.++.|++... ..++..+|..+++-.
T Consensus 216 ~lY~aD~~~~-----~--I~~~~~dG~~-----~~~~~~~~~--~~P~giav~~~~ly~td~~~~~V~~~~~~~G~~~ 279 (349)
T 3v64_C 216 RMYWVDAKHH-----V--IERANLDGSH-----RKAVISQGL--PHPFAITVFEDSLYWTDWHTKSINSANKFTGKNQ 279 (349)
T ss_dssp EEEEEETTTT-----E--EEEEETTSCS-----CEEEECSSC--SSEEEEEEETTEEEEEETTTTEEEEEETTTCCSC
T ss_pred EEEEEECCCC-----E--EEEEeCCCCc-----eEEEEeCCC--CCceEEEEECCEEEEecCCCCeEEEEEccCCCcc
Confidence 9999876432 3 4444433221 112211122 566666545568888765 346999996665543
|
| >3v7d_B Cell division control protein 4; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_B* 3mks_B* | Back alignment and structure |
|---|
Probab=88.57 E-value=14 Score=33.42 Aligned_cols=197 Identities=12% Similarity=0.118 Sum_probs=95.3
Q ss_pred EEeeeceeEEeecCCccEEEEEeccccceee-cCCcCCCCCCCCcceEEEeeecCCCCeEEEEEEEEcCCCCccEEEEEE
Q 017748 102 IIGSCNGLLALEDSRRNIMLLLNPLTKRHRV-LPTFYRDLSRCVPSLEGFGFDVGSGDFKLVKILAFGKPMNYTEVAVFS 180 (366)
Q Consensus 102 ~~~s~~Gll~~~~~~~~~~~V~NP~t~~~~~-LP~~~~~~~~~~~~~~~lg~d~~~~~ykvv~~~~~~~~~~~~~~~vys 180 (366)
.+...+++++....+..+. +||..+++... +.. + ......+.+.+.. .++.... ...+.+++
T Consensus 127 ~~~~~~~~l~sgs~dg~i~-vwd~~~~~~~~~~~~----h---~~~V~~l~~~~~~---~l~s~s~------dg~i~vwd 189 (464)
T 3v7d_B 127 CLQFEDNYVITGADDKMIR-VYDSINKKFLLQLSG----H---DGGVWALKYAHGG---ILVSGST------DRTVRVWD 189 (464)
T ss_dssp EEEEETTEEEEEETTSCEE-EEETTTTEEEEEECC----C---SSCEEEEEECSTT---EEEEEET------TSCEEEEE
T ss_pred EEEECCCEEEEEcCCCcEE-EEECCCCcEEEEEeC----C---CcCEEEEEEcCCC---EEEEEeC------CCCEEEEE
Confidence 3444456666665667788 99988877543 221 1 1234455554432 3333321 44688888
Q ss_pred ecCCcEEE-ccCCCcceecCCcceEE----CCcEEEEEeeCCCCCCCcEEEEEECCCceeeee-C----------CCCc-
Q 017748 181 LRVNSWRR-IQDFPYFWVTGTCSVFV----NGALHWTAALNQDADRNDIIIAFDLKSEEFYQV-P----------LPPI- 243 (366)
Q Consensus 181 s~t~~W~~-~~~~~~~~~~~~~~v~~----~G~lYw~~~~~~~~~~~~~i~~fD~~~~~~~~i-~----------lP~~- 243 (366)
..++.-.. +...... -.++.+ +|.....+ ..+ ..|..+|+.+..-... . .|..
T Consensus 190 ~~~~~~~~~~~~h~~~----v~~l~~~~~~~~~~l~s~-s~d-----~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~ 259 (464)
T 3v7d_B 190 IKKGCCTHVFEGHNST----VRCLDIVEYKNIKYIVTG-SRD-----NTLHVWKLPKESSVPDHGEEHDYPLVFHTPEEN 259 (464)
T ss_dssp TTTTEEEEEECCCSSC----EEEEEEEESSSCEEEEEE-ETT-----SCEEEEECCCCCCC------CCSSEEESCGGGC
T ss_pred CCCCcEEEEECCCCCc----cEEEEEecCCCCCEEEEE-cCC-----CcEEEeeCCCCcccccccccCCcceEeeccCCC
Confidence 87764321 1111100 011111 23333333 322 2688888876543211 0 0000
Q ss_pred ---c---CCCCceEEEEEECCeEEEEEeecCCCCCCcEEEEEeccCCCCCceEEEEEeccCCCceeeEEEEecCCcEEEE
Q 017748 244 ---V---GIEGYYILLEALGGCLCLLCKFDDDDDDRPWDLWVMKEYGVNDSWTKLATLLNVGGGNVKPLVYSRSEDKVLL 317 (366)
Q Consensus 244 ---~---~~~~~~~~l~~~~g~L~l~~~~~~~~~~~~l~iW~l~~~~~~~~W~~~~~i~~~~~~~~~~~~~~~~g~~i~~ 317 (366)
. ..+.....-...+|.+.+++..+. .+.+|-+... ..+..+.... ....-+++..++..++.
T Consensus 260 ~~~~~~~~~~~~~v~~~~~~~~~l~~~~~d~-----~i~vwd~~~~------~~~~~~~~~~-~~v~~~~~~~~~~~l~s 327 (464)
T 3v7d_B 260 PYFVGVLRGHMASVRTVSGHGNIVVSGSYDN-----TLIVWDVAQM------KCLYILSGHT-DRIYSTIYDHERKRCIS 327 (464)
T ss_dssp TTEEEEECCCSSCEEEEEEETTEEEEEETTS-----CEEEEETTTT------EEEEEECCCS-SCEEEEEEETTTTEEEE
T ss_pred eEEEEEccCccceEEEEcCCCCEEEEEeCCC-----eEEEEECCCC------cEEEEecCCC-CCEEEEEEcCCCCEEEE
Confidence 0 000111112233455555555454 8999987642 2233332211 11444566667756666
Q ss_pred EeeCCeEEEEeCCCCeEEEe
Q 017748 318 HAVRGDLCWYDLERHRVRSI 337 (366)
Q Consensus 318 ~~~~~~~~~yd~~t~~~~~v 337 (366)
...++.+..||+++++....
T Consensus 328 g~~dg~i~vwd~~~~~~~~~ 347 (464)
T 3v7d_B 328 ASMDTTIRIWDLENGELMYT 347 (464)
T ss_dssp EETTSCEEEEETTTTEEEEE
T ss_pred EeCCCcEEEEECCCCcEEEE
Confidence 66677788888888775433
|
| >1nir_A Nitrite reductase; hemoprotein, denitrification, domain swapping; HET: HEC DHE; 2.15A {Pseudomonas aeruginosa} SCOP: a.3.1.2 b.70.2.1 PDB: 1bl9_A* 1n15_A* 1n50_A* 1n90_A* 1gjq_A* 1nno_A* 1hzv_A* 1hzu_A* | Back alignment and structure |
|---|
Probab=88.51 E-value=15 Score=34.45 Aligned_cols=119 Identities=16% Similarity=0.155 Sum_probs=69.5
Q ss_pred CCcEEEEEeeCCCCCCCcEEEEEECCCceeee-eCCCCccCCCCceEEEEEEC-CeEEEEEeecCCCCCCcEEEEEeccC
Q 017748 206 NGALHWTAALNQDADRNDIIIAFDLKSEEFYQ-VPLPPIVGIEGYYILLEALG-GCLCLLCKFDDDDDDRPWDLWVMKEY 283 (366)
Q Consensus 206 ~G~lYw~~~~~~~~~~~~~i~~fD~~~~~~~~-i~lP~~~~~~~~~~~l~~~~-g~L~l~~~~~~~~~~~~l~iW~l~~~ 283 (366)
+|...+.+.... ..|..+|+++.+... ++..... +......+..-+ |.+++.....+. .+.||-.+..
T Consensus 334 dg~~l~va~~~~-----~~v~v~D~~tg~l~~~i~~g~~p-h~g~g~~~~~p~~g~~~~s~~~~d~----~V~v~d~~~~ 403 (543)
T 1nir_A 334 SHRYFMTAANNS-----NKVAVIDSKDRRLSALVDVGKTP-HPGRGANFVHPKYGPVWSTSHLGDG----SISLIGTDPK 403 (543)
T ss_dssp TSCEEEEEEGGG-----TEEEEEETTTTEEEEEEECSSSB-CCTTCEEEEETTTEEEEEEEBSSSS----EEEEEECCTT
T ss_pred CCCEEEEEecCC-----CeEEEEECCCCeEEEeeccCCCC-CCCCCcccCCCCCccEEEeccCCCc----eEEEEEeCCC
Confidence 566555554332 378889999887643 3332111 111122222223 666554432322 8999998763
Q ss_pred C-CCCceEEEEEeccCCCceeeEEEEecCCcEEEEEe--e-----CCeEEEEeCCCCeEE
Q 017748 284 G-VNDSWTKLATLLNVGGGNVKPLVYSRSEDKVLLHA--V-----RGDLCWYDLERHRVR 335 (366)
Q Consensus 284 ~-~~~~W~~~~~i~~~~~~~~~~~~~~~~g~~i~~~~--~-----~~~~~~yd~~t~~~~ 335 (366)
+ .+..|..+.++.... +....+.++++|..|+... + +..+.+||.+|.+..
T Consensus 404 ~~~~~~~~~v~~l~~~g-~~~~~v~~~pdg~~l~v~~~~~~~~~~~~~v~v~d~~~~~~~ 462 (543)
T 1nir_A 404 NHPQYAWKKVAELQGQG-GGSLFIKTHPKSSHLYVDTTFNPDARISQSVAVFDLKNLDAK 462 (543)
T ss_dssp TCTTTBTSEEEEEECSC-SCCCCEECCTTCCEEEECCTTCSSHHHHTCEEEEETTCTTSC
T ss_pred CCchhcCeEEEEEEcCC-CCceEEEcCCCCCcEEEecCCCCCcccCceEEEEECCCCCCC
Confidence 2 234599999987532 1145577888886777665 1 346999999987743
|
| >1npe_A Nidogen, entactin; glycoprotein, basement membrane, beta-propeller, EGF-like, structural protein; 2.30A {Mus musculus} SCOP: b.68.5.1 | Back alignment and structure |
|---|
Probab=88.48 E-value=9.7 Score=31.61 Aligned_cols=194 Identities=13% Similarity=0.044 Sum_probs=98.7
Q ss_pred eeeceeEEeec-CCccEEEEEeccccceeecCCcCCCCCCCCcceEEEeeecCCCCeEEEEEEEEcCCCCccEEEEEEec
Q 017748 104 GSCNGLLALED-SRRNIMLLLNPLTKRHRVLPTFYRDLSRCVPSLEGFGFDVGSGDFKLVKILAFGKPMNYTEVAVFSLR 182 (366)
Q Consensus 104 ~s~~Gll~~~~-~~~~~~~V~NP~t~~~~~LP~~~~~~~~~~~~~~~lg~d~~~~~ykvv~~~~~~~~~~~~~~~vyss~ 182 (366)
+..+|.+...+ ....+. ++++.++....+-... .....++.+|+..+. +.... . ....+.+++..
T Consensus 44 d~~~~~ly~~d~~~~~I~-~~~~~g~~~~~~~~~~------~~~p~~ia~d~~~~~--lyv~d---~--~~~~I~~~~~~ 109 (267)
T 1npe_A 44 DCVDKVVYWTDISEPSIG-RASLHGGEPTTIIRQD------LGSPEGIALDHLGRT--IFWTD---S--QLDRIEVAKMD 109 (267)
T ss_dssp ETTTTEEEEEETTTTEEE-EEESSSCCCEEEECTT------CCCEEEEEEETTTTE--EEEEE---T--TTTEEEEEETT
T ss_pred ecCCCEEEEEECCCCEEE-EEecCCCCcEEEEECC------CCCccEEEEEecCCe--EEEEE---C--CCCEEEEEEcC
Confidence 33456665554 445677 8888776543332111 124557778875432 22211 1 13467777775
Q ss_pred CCcEEEccCCCcceecCCcceEE---CCcEEEEEeeCCCCCCCcEEEEEECCCceeeeeCCCCccCCCCceEEEEEE--C
Q 017748 183 VNSWRRIQDFPYFWVTGTCSVFV---NGALHWTAALNQDADRNDIIIAFDLKSEEFYQVPLPPIVGIEGYYILLEAL--G 257 (366)
Q Consensus 183 t~~W~~~~~~~~~~~~~~~~v~~---~G~lYw~~~~~~~~~~~~~i~~fD~~~~~~~~i~lP~~~~~~~~~~~l~~~--~ 257 (366)
...-+.+.... . ....++.+ +|.+||...... ...|..+++.......+.- ... .....++.. +
T Consensus 110 g~~~~~~~~~~--~-~~P~~i~vd~~~g~lyv~~~~~~----~~~I~~~~~dg~~~~~~~~-~~~---~~P~gia~d~~~ 178 (267)
T 1npe_A 110 GTQRRVLFDTG--L-VNPRGIVTDPVRGNLYWTDWNRD----NPKIETSHMDGTNRRILAQ-DNL---GLPNGLTFDAFS 178 (267)
T ss_dssp SCSCEEEECSS--C-SSEEEEEEETTTTEEEEEECCSS----SCEEEEEETTSCCCEEEEC-TTC---SCEEEEEEETTT
T ss_pred CCCEEEEEECC--C-CCccEEEEeeCCCEEEEEECCCC----CcEEEEEecCCCCcEEEEE-CCC---CCCcEEEEcCCC
Confidence 43323221111 0 11224444 588999865421 1378888887544333311 111 112233333 5
Q ss_pred CeEEEEEeecCCCCCCcEEEEEeccCCCCCceEEEEEeccCCCceeeEEEEecCCcEEEEEee-CCeEEEEeCCCCeEEE
Q 017748 258 GCLCLLCKFDDDDDDRPWDLWVMKEYGVNDSWTKLATLLNVGGGNVKPLVYSRSEDKVLLHAV-RGDLCWYDLERHRVRS 336 (366)
Q Consensus 258 g~L~l~~~~~~~~~~~~l~iW~l~~~~~~~~W~~~~~i~~~~~~~~~~~~~~~~g~~i~~~~~-~~~~~~yd~~t~~~~~ 336 (366)
+.||++..... .+ ++++-.+. .....+. .. ..|.++..+++.+++... .+++..+|+++++...
T Consensus 179 ~~lyv~d~~~~-----~I--~~~~~~g~----~~~~~~~--~~--~~P~gi~~d~~~lyva~~~~~~v~~~d~~~g~~~~ 243 (267)
T 1npe_A 179 SQLCWVDAGTH-----RA--ECLNPAQP----GRRKVLE--GL--QYPFAVTSYGKNLYYTDWKTNSVIAMDLAISKEMD 243 (267)
T ss_dssp TEEEEEETTTT-----EE--EEEETTEE----EEEEEEE--CC--CSEEEEEEETTEEEEEETTTTEEEEEETTTTEEEE
T ss_pred CEEEEEECCCC-----EE--EEEecCCC----ceEEEec--CC--CCceEEEEeCCEEEEEECCCCeEEEEeCCCCCceE
Confidence 68888776433 44 44443211 1111222 12 456666656668888764 3579999999887654
Q ss_pred e
Q 017748 337 I 337 (366)
Q Consensus 337 v 337 (366)
.
T Consensus 244 ~ 244 (267)
T 1npe_A 244 T 244 (267)
T ss_dssp E
T ss_pred E
Confidence 3
|
| >3fm0_A Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD repeat, biosynthetic prote structural genomics, structural genomics consortium; 1.70A {Homo sapiens} | Back alignment and structure |
|---|
Probab=88.34 E-value=12 Score=32.47 Aligned_cols=183 Identities=14% Similarity=0.130 Sum_probs=89.3
Q ss_pred CCccEEEEEeccccceeecCCcCCCCCCCCcceEEEeeecCCCCeEEEEEEEEcCCCCccEEEEEEecCCcEEEccCCCc
Q 017748 115 SRRNIMLLLNPLTKRHRVLPTFYRDLSRCVPSLEGFGFDVGSGDFKLVKILAFGKPMNYTEVAVFSLRVNSWRRIQDFPY 194 (366)
Q Consensus 115 ~~~~~~~V~NP~t~~~~~LP~~~~~~~~~~~~~~~lg~d~~~~~ykvv~~~~~~~~~~~~~~~vyss~t~~W~~~~~~~~ 194 (366)
.+..+. |||..++.+.........+ ......+.+.|. +.+ ++.... ...+.+++..++.++.+..+..
T Consensus 36 ~D~~i~-iw~~~~~~~~~~~~~~~~h---~~~v~~~~~sp~-g~~-l~s~s~------D~~v~iw~~~~~~~~~~~~~~~ 103 (345)
T 3fm0_A 36 GDRRIR-IWGTEGDSWICKSVLSEGH---QRTVRKVAWSPC-GNY-LASASF------DATTCIWKKNQDDFECVTTLEG 103 (345)
T ss_dssp TTSCEE-EEEEETTEEEEEEEECSSC---SSCEEEEEECTT-SSE-EEEEET------TSCEEEEEECCC-EEEEEEECC
T ss_pred CCCeEE-EEEcCCCcceeeeeecccc---CCcEEEEEECCC-CCE-EEEEEC------CCcEEEEEccCCCeEEEEEccC
Confidence 445566 8887776543221111111 123455666664 233 222221 3457788877776654322211
Q ss_pred ceecCCcceEE--CCcEEEEEeeCCCCCCCcEEEEEECCCce-eeee-CCCCccCCCCceEEEEEE-CCeEEEEEeecCC
Q 017748 195 FWVTGTCSVFV--NGALHWTAALNQDADRNDIIIAFDLKSEE-FYQV-PLPPIVGIEGYYILLEAL-GGCLCLLCKFDDD 269 (366)
Q Consensus 195 ~~~~~~~~v~~--~G~lYw~~~~~~~~~~~~~i~~fD~~~~~-~~~i-~lP~~~~~~~~~~~l~~~-~g~L~l~~~~~~~ 269 (366)
... .-.++.+ +|.+...+..+ ..|..+|+.++. ...+ .+.... .....+... +|++.+.+..+.
T Consensus 104 h~~-~v~~v~~sp~~~~l~s~s~D------~~v~iwd~~~~~~~~~~~~~~~h~---~~v~~~~~~p~~~~l~s~s~d~- 172 (345)
T 3fm0_A 104 HEN-EVKSVAWAPSGNLLATCSRD------KSVWVWEVDEEDEYECVSVLNSHT---QDVKHVVWHPSQELLASASYDD- 172 (345)
T ss_dssp CSS-CEEEEEECTTSSEEEEEETT------SCEEEEEECTTSCEEEEEEECCCC---SCEEEEEECSSSSCEEEEETTS-
T ss_pred CCC-CceEEEEeCCCCEEEEEECC------CeEEEEECCCCCCeEEEEEecCcC---CCeEEEEECCCCCEEEEEeCCC-
Confidence 100 0011222 35444433333 258888887542 2222 111111 112223333 456555555444
Q ss_pred CCCCcEEEEEeccCCCCCceEEEEEeccCCCceeeEEEEecCCcEEEEEeeCCeEEEEeC
Q 017748 270 DDDRPWDLWVMKEYGVNDSWTKLATLLNVGGGNVKPLVYSRSEDKVLLHAVRGDLCWYDL 329 (366)
Q Consensus 270 ~~~~~l~iW~l~~~~~~~~W~~~~~i~~~~~~~~~~~~~~~~g~~i~~~~~~~~~~~yd~ 329 (366)
.+.+|.++. ..|....++.... ....-+++.++|..|+....++.+..||.
T Consensus 173 ----~i~~w~~~~----~~~~~~~~~~~h~-~~v~~l~~sp~g~~l~s~s~D~~v~iW~~ 223 (345)
T 3fm0_A 173 ----TVKLYREEE----DDWVCCATLEGHE-STVWSLAFDPSGQRLASCSDDRTVRIWRQ 223 (345)
T ss_dssp ----CEEEEEEET----TEEEEEEEECCCS-SCEEEEEECTTSSEEEEEETTSCEEEEEE
T ss_pred ----cEEEEEecC----CCEEEEEEecCCC-CceEEEEECCCCCEEEEEeCCCeEEEecc
Confidence 899998875 3477666664321 12445667777766666667777888875
|
| >3fm0_A Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD repeat, biosynthetic prote structural genomics, structural genomics consortium; 1.70A {Homo sapiens} | Back alignment and structure |
|---|
Probab=88.17 E-value=12 Score=32.40 Aligned_cols=152 Identities=14% Similarity=0.146 Sum_probs=81.0
Q ss_pred ccEEEEEEecCCcEEEccCCCcceecCCcceEE--CCcEEEEEeeCCCCCCCcEEEEEECCCceeeee-CCCCccCCCCc
Q 017748 173 YTEVAVFSLRVNSWRRIQDFPYFWVTGTCSVFV--NGALHWTAALNQDADRNDIIIAFDLKSEEFYQV-PLPPIVGIEGY 249 (366)
Q Consensus 173 ~~~~~vyss~t~~W~~~~~~~~~~~~~~~~v~~--~G~lYw~~~~~~~~~~~~~i~~fD~~~~~~~~i-~lP~~~~~~~~ 249 (366)
...+.+++..++.|.............-.++.+ +|.....+..+ ..+..+|..++.+..+ .+.... ..
T Consensus 37 D~~i~iw~~~~~~~~~~~~~~~~h~~~v~~~~~sp~g~~l~s~s~D------~~v~iw~~~~~~~~~~~~~~~h~---~~ 107 (345)
T 3fm0_A 37 DRRIRIWGTEGDSWICKSVLSEGHQRTVRKVAWSPCGNYLASASFD------ATTCIWKKNQDDFECVTTLEGHE---NE 107 (345)
T ss_dssp TSCEEEEEEETTEEEEEEEECSSCSSCEEEEEECTTSSEEEEEETT------SCEEEEEECCC-EEEEEEECCCS---SC
T ss_pred CCeEEEEEcCCCcceeeeeeccccCCcEEEEEECCCCCEEEEEECC------CcEEEEEccCCCeEEEEEccCCC---CC
Confidence 446888998888875322111110000011222 35443333322 2577788877665433 222221 12
Q ss_pred eEEEEEE-CCeEEEEEeecCCCCCCcEEEEEeccCCCCCceEEEEEeccCCCceeeEEEEecCCcEEEEEeeCCeEEEEe
Q 017748 250 YILLEAL-GGCLCLLCKFDDDDDDRPWDLWVMKEYGVNDSWTKLATLLNVGGGNVKPLVYSRSEDKVLLHAVRGDLCWYD 328 (366)
Q Consensus 250 ~~~l~~~-~g~L~l~~~~~~~~~~~~l~iW~l~~~~~~~~W~~~~~i~~~~~~~~~~~~~~~~g~~i~~~~~~~~~~~yd 328 (366)
...+... +|++.+.+..+. .+.+|.++.. ..+..+..+.... ....-+.+.+++..++....++.+..||
T Consensus 108 v~~v~~sp~~~~l~s~s~D~-----~v~iwd~~~~---~~~~~~~~~~~h~-~~v~~~~~~p~~~~l~s~s~d~~i~~w~ 178 (345)
T 3fm0_A 108 VKSVAWAPSGNLLATCSRDK-----SVWVWEVDEE---DEYECVSVLNSHT-QDVKHVVWHPSQELLASASYDDTVKLYR 178 (345)
T ss_dssp EEEEEECTTSSEEEEEETTS-----CEEEEEECTT---SCEEEEEEECCCC-SCEEEEEECSSSSCEEEEETTSCEEEEE
T ss_pred ceEEEEeCCCCEEEEEECCC-----eEEEEECCCC---CCeEEEEEecCcC-CCeEEEEECCCCCEEEEEeCCCcEEEEE
Confidence 2233333 466666555554 8999999763 2344444443211 1144566677775666667777799999
Q ss_pred CCCCeEEEeeeecC
Q 017748 329 LERHRVRSIVEIDD 342 (366)
Q Consensus 329 ~~t~~~~~v~~~~~ 342 (366)
.+++++..+..+.+
T Consensus 179 ~~~~~~~~~~~~~~ 192 (345)
T 3fm0_A 179 EEEDDWVCCATLEG 192 (345)
T ss_dssp EETTEEEEEEEECC
T ss_pred ecCCCEEEEEEecC
Confidence 99988765534554
|
| >2pm7_B Protein transport protein SEC13, protein transport protein SEC31; beta propeller, alpha solenoid; 2.35A {Saccharomyces cerevisiae} PDB: 2pm9_B 2pm6_B 3iko_A 3mzk_A 3mzl_A | Back alignment and structure |
|---|
Probab=88.16 E-value=11 Score=31.84 Aligned_cols=71 Identities=11% Similarity=0.107 Sum_probs=41.9
Q ss_pred eEEEEEeecCCCCCCcEEEEEeccCCCCCceEEEEEeccCCC-ceeeEEEEecCCcEEEEEeeCCeEEEEeCC-CCeEEE
Q 017748 259 CLCLLCKFDDDDDDRPWDLWVMKEYGVNDSWTKLATLLNVGG-GNVKPLVYSRSEDKVLLHAVRGDLCWYDLE-RHRVRS 336 (366)
Q Consensus 259 ~L~l~~~~~~~~~~~~l~iW~l~~~~~~~~W~~~~~i~~~~~-~~~~~~~~~~~g~~i~~~~~~~~~~~yd~~-t~~~~~ 336 (366)
.+.+.+..+. .+.||.++.. ...|.... +..... ....-+++..+|..|.....++.+..|+.. .++|+.
T Consensus 220 ~~las~s~D~-----~v~iWd~~~~--~~~~~~~~-~~~~~~~~~v~~~~~s~~g~~las~~~D~~v~lw~~~~~g~w~~ 291 (297)
T 2pm7_B 220 SYMASVSQDR-----TCIIWTQDNE--QGPWKKTL-LKEEKFPDVLWRASWSLSGNVLALSGGDNKVTLWKENLEGKWEP 291 (297)
T ss_dssp EEEEEEETTS-----CEEEEEESST--TSCCEEEE-SSSSCCSSCEEEEEECSSSCCEEEEETTSCEEEEEECTTSCEEE
T ss_pred eEEEEEECCC-----cEEEEEeCCC--CCccceee-eecccCCCcEEEEEECCCCCEEEEEcCCCcEEEEEECCCCcEEe
Confidence 4444444444 8999998763 23465422 211111 124445667788566666777778889876 567887
Q ss_pred e
Q 017748 337 I 337 (366)
Q Consensus 337 v 337 (366)
+
T Consensus 292 ~ 292 (297)
T 2pm7_B 292 A 292 (297)
T ss_dssp C
T ss_pred c
Confidence 6
|
| >2ad6_A Methanol dehydrogenase subunit 1; PQQ configuration, native, oxidoredu; HET: PQQ; 1.50A {Methylophilus methylotrophus} SCOP: b.70.1.1 PDB: 2ad7_A* 2ad8_A* 4aah_A* 1g72_A* | Back alignment and structure |
|---|
Probab=88.08 E-value=4.7 Score=38.34 Aligned_cols=122 Identities=15% Similarity=0.086 Sum_probs=66.3
Q ss_pred CcceEECCcEEEEEe-eCCCCCCCcEEEEEEC-CCc--eeeeeCCCCccC------CCCceEEEEEECCeEEEEEeecCC
Q 017748 200 TCSVFVNGALHWTAA-LNQDADRNDIIIAFDL-KSE--EFYQVPLPPIVG------IEGYYILLEALGGCLCLLCKFDDD 269 (366)
Q Consensus 200 ~~~v~~~G~lYw~~~-~~~~~~~~~~i~~fD~-~~~--~~~~i~lP~~~~------~~~~~~~l~~~~g~L~l~~~~~~~ 269 (366)
..++..+|.+|.... .. .+.++|. ++. .|+. .++.... .......++..+|+|++....
T Consensus 56 ~~P~v~~g~vyv~~~~~~-------~v~AlD~~~tG~~~W~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~~~d--- 124 (571)
T 2ad6_A 56 GAPLVIGDMMYVHSAFPN-------NTYALNLNDPGKIVWQH-KPKQDASTKAVMCCDVVDRGLAYGAGQIVKKQAN--- 124 (571)
T ss_dssp SCCEEETTEEEEECSTTT-------CEEEEETTCTTSEEEEE-CCCCCGGGGGGCTTCSCCCCCEEETTEEEEECTT---
T ss_pred cccEEECCEEEEEeCCCC-------EEEEEeCCCCccEEEEE-cCCCCccccccccccccccccEEECCEEEEEeCC---
Confidence 457889999998876 33 6999998 654 4543 2322110 000112234567777775431
Q ss_pred CCCCcEEEEEeccCCCCCceEEEEEeccCCCce-eeEEEEecCCcEEEEEee------CCeEEEEeCCCCeEEEeeee
Q 017748 270 DDDRPWDLWVMKEYGVNDSWTKLATLLNVGGGN-VKPLVYSRSEDKVLLHAV------RGDLCWYDLERHRVRSIVEI 340 (366)
Q Consensus 270 ~~~~~l~iW~l~~~~~~~~W~~~~~i~~~~~~~-~~~~~~~~~g~~i~~~~~------~~~~~~yd~~t~~~~~v~~~ 340 (366)
-.+..++-...+..|.....-....... ..|... ++ .|++... ++.+++||.+|++..+-++.
T Consensus 125 -----g~l~alD~~tG~~~W~~~~~~~~~~~~~~~~P~v~--~g-~v~vg~~~~~~~~~g~v~a~D~~tG~~~W~~~~ 194 (571)
T 2ad6_A 125 -----GHLLALDAKTGKINWEVEVCDPKVGSTLTQAPFVA--KD-TVLMGCSGAELGVRGAVNAFDLKTGELKWRAFA 194 (571)
T ss_dssp -----SEEEEEETTTCCEEEEEECCCGGGTCBCCSCCEEE--TT-EEEEECBCGGGTCCCEEEEEETTTCCEEEEEES
T ss_pred -----CEEEEEECCCCCEEEEecCCCCCccceeccCCEEE--CC-EEEEEecCCccCCCCEEEEEECCCCcEEEEEcc
Confidence 1244555432345576532110000011 334332 34 7877765 46799999999997765444
|
| >4ery_A WD repeat-containing protein 5; WD40, WIN motif, beta propeller, 3-10 helix, lysine methyltransferase, RBBP5, ASH2L, core complex; 1.30A {Homo sapiens} PDB: 2h6k_A* 2h68_A* 2h6q_A* 3eg6_A 4erq_A 2h6n_A 4erz_A 4es0_A 4esg_A 4ewr_A 2gnq_A 2xl2_A 2xl3_A 3uvk_A* 3psl_A* 3uvl_A 3uvm_A 3uvn_A 3uvo_A 2h14_A ... | Back alignment and structure |
|---|
Probab=88.04 E-value=11 Score=31.83 Aligned_cols=182 Identities=11% Similarity=0.171 Sum_probs=92.9
Q ss_pred CCccEEEEEeccccceeecCCcCCCCCCCCcceEEEeeecCCCCeEEEEEEEEcCCCCccEEEEEEecCCcEEE-ccCCC
Q 017748 115 SRRNIMLLLNPLTKRHRVLPTFYRDLSRCVPSLEGFGFDVGSGDFKLVKILAFGKPMNYTEVAVFSLRVNSWRR-IQDFP 193 (366)
Q Consensus 115 ~~~~~~~V~NP~t~~~~~LP~~~~~~~~~~~~~~~lg~d~~~~~ykvv~~~~~~~~~~~~~~~vyss~t~~W~~-~~~~~ 193 (366)
.+..+. ||+..+++....-... ......+.+.+.. .+ ++... ....+.+|+..++.-.. +..-.
T Consensus 43 ~dg~i~-iw~~~~~~~~~~~~~h------~~~v~~~~~~~~~-~~-l~s~~------~d~~i~vwd~~~~~~~~~~~~~~ 107 (312)
T 4ery_A 43 ADKLIK-IWGAYDGKFEKTISGH------KLGISDVAWSSDS-NL-LVSAS------DDKTLKIWDVSSGKCLKTLKGHS 107 (312)
T ss_dssp TTSCEE-EEETTTCCEEEEECCC------SSCEEEEEECTTS-SE-EEEEE------TTSEEEEEETTTCCEEEEEECCS
T ss_pred CCCeEE-EEeCCCcccchhhccC------CCceEEEEEcCCC-CE-EEEEC------CCCEEEEEECCCCcEEEEEcCCC
Confidence 445566 8887776654422111 1234456666642 22 22221 14568888887654221 11100
Q ss_pred cceecCCcceE--ECCcEEEEEeeCCCCCCCcEEEEEECCCceeee-eCCCCccCCCCceEEEEEE-CCeEEEEEeecCC
Q 017748 194 YFWVTGTCSVF--VNGALHWTAALNQDADRNDIIIAFDLKSEEFYQ-VPLPPIVGIEGYYILLEAL-GGCLCLLCKFDDD 269 (366)
Q Consensus 194 ~~~~~~~~~v~--~~G~lYw~~~~~~~~~~~~~i~~fD~~~~~~~~-i~lP~~~~~~~~~~~l~~~-~g~L~l~~~~~~~ 269 (366)
... ..+. -+|.+...+..+ ..|..+|+++.+... +..... ....+... +|++.+.+..+.
T Consensus 108 ~~v----~~~~~~~~~~~l~s~~~d------~~i~iwd~~~~~~~~~~~~~~~-----~v~~~~~~~~~~~l~~~~~d~- 171 (312)
T 4ery_A 108 NYV----FCCNFNPQSNLIVSGSFD------ESVRIWDVKTGKCLKTLPAHSD-----PVSAVHFNRDGSLIVSSSYDG- 171 (312)
T ss_dssp SCE----EEEEECSSSSEEEEEETT------SCEEEEETTTCCEEEEECCCSS-----CEEEEEECTTSSEEEEEETTS-
T ss_pred CCE----EEEEEcCCCCEEEEEeCC------CcEEEEECCCCEEEEEecCCCC-----cEEEEEEcCCCCEEEEEeCCC-
Confidence 000 0111 134433333332 368899998765432 222211 12223332 566666665554
Q ss_pred CCCCcEEEEEeccCCCCCceEEEEEeccCCCceeeEEEEecCCcEEEEEeeCCeEEEEeCCCCeEEEe
Q 017748 270 DDDRPWDLWVMKEYGVNDSWTKLATLLNVGGGNVKPLVYSRSEDKVLLHAVRGDLCWYDLERHRVRSI 337 (366)
Q Consensus 270 ~~~~~l~iW~l~~~~~~~~W~~~~~i~~~~~~~~~~~~~~~~g~~i~~~~~~~~~~~yd~~t~~~~~v 337 (366)
.+.+|-+... ..+..+..........+.+.+++..++....++.+..||+++++....
T Consensus 172 ----~i~~wd~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~ 229 (312)
T 4ery_A 172 ----LCRIWDTASG------QCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKT 229 (312)
T ss_dssp ----CEEEEETTTC------CEEEEECCSSCCCEEEEEECTTSSEEEEEETTTEEEEEETTTTEEEEE
T ss_pred ----cEEEEECCCC------ceeeEEeccCCCceEEEEECCCCCEEEEEcCCCeEEEEECCCCcEEEE
Confidence 8999988752 122233221111144566777886677777788899999999886544
|
| >3lrv_A PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiquitin ligase, spliceosome, DNA damage, D repair, mRNA processing, nucleus; 2.60A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=88.04 E-value=12 Score=32.26 Aligned_cols=203 Identities=11% Similarity=-0.019 Sum_probs=100.9
Q ss_pred EEEeeeceeEEeecCCccEEEEEecccccee-ecCCcCCCCCCCCcceEEEeeecC-CCCeEEEEEEEEcCCCCccEEEE
Q 017748 101 FIIGSCNGLLALEDSRRNIMLLLNPLTKRHR-VLPTFYRDLSRCVPSLEGFGFDVG-SGDFKLVKILAFGKPMNYTEVAV 178 (366)
Q Consensus 101 ~~~~s~~Gll~~~~~~~~~~~V~NP~t~~~~-~LP~~~~~~~~~~~~~~~lg~d~~-~~~ykvv~~~~~~~~~~~~~~~v 178 (366)
.+.++.+|.+.+.+...... ++|..+++.. .+.... ......+.++|. .+.+-+.+ . ....+.+
T Consensus 88 ~~s~s~D~~i~~w~~~~~~~-~~~~~~~~~~~~~~~~~------~~~v~~~~~~~~~~~~~l~s~-s------~dg~i~~ 153 (343)
T 3lrv_A 88 IISRGPCNRLLLLYPGNQIT-ILDSKTNKVLREIEVDS------ANEIIYMYGHNEVNTEYFIWA-D------NRGTIGF 153 (343)
T ss_dssp EEEECSTTEEEEEETTTEEE-EEETTTCCEEEEEECCC------SSCEEEEECCC---CCEEEEE-E------TTCCEEE
T ss_pred eEEecCCCeEEEEEccCceE-EeecCCcceeEEeecCC------CCCEEEEEcCCCCCCCEEEEE-e------CCCcEEE
Confidence 45666788888887666777 8888888733 222111 113455667662 23333222 2 1446888
Q ss_pred EEecCCcEEEccCCCcceecCCcceEE--CCcEEEEEeeCCCCCCCcEEEEEECCCceeeeeCCCCccCCCCceEEEEEE
Q 017748 179 FSLRVNSWRRIQDFPYFWVTGTCSVFV--NGALHWTAALNQDADRNDIIIAFDLKSEEFYQVPLPPIVGIEGYYILLEAL 256 (366)
Q Consensus 179 yss~t~~W~~~~~~~~~~~~~~~~v~~--~G~lYw~~~~~~~~~~~~~i~~fD~~~~~~~~i~lP~~~~~~~~~~~l~~~ 256 (366)
|+.+++.-......... ..-.++.+ +|.+...+..+ ..|..+|+.+.+-....+... +......+...
T Consensus 154 wd~~~~~~~~~~~~~~~--~~i~~~~~~pdg~~lasg~~d------g~i~iwd~~~~~~~~~~~~~~--h~~~v~~l~fs 223 (343)
T 3lrv_A 154 QSYEDDSQYIVHSAKSD--VEYSSGVLHKDSLLLALYSPD------GILDVYNLSSPDQASSRFPVD--EEAKIKEVKFA 223 (343)
T ss_dssp EESSSSCEEEEECCCSS--CCCCEEEECTTSCEEEEECTT------SCEEEEESSCTTSCCEECCCC--TTSCEEEEEEC
T ss_pred EECCCCcEEEEEecCCC--CceEEEEECCCCCEEEEEcCC------CEEEEEECCCCCCCccEEecc--CCCCEEEEEEe
Confidence 98887654322111100 00112222 45555444433 369999999876542222221 11123334444
Q ss_pred -CCeEEEEEeecCCCCCCcEEEEEeccCCCCCceEEEEEeccCCCcee-eEEEEecCCcEEEEEee-CCeEEEEeC--CC
Q 017748 257 -GGCLCLLCKFDDDDDDRPWDLWVMKEYGVNDSWTKLATLLNVGGGNV-KPLVYSRSEDKVLLHAV-RGDLCWYDL--ER 331 (366)
Q Consensus 257 -~g~L~l~~~~~~~~~~~~l~iW~l~~~~~~~~W~~~~~i~~~~~~~~-~~~~~~~~g~~i~~~~~-~~~~~~yd~--~t 331 (366)
+|...+.+. ++ .+.+|-+.......... .+........ .-+++..+|..++.... ++.+..|+. .+
T Consensus 224 ~~g~~l~s~~-~~-----~v~iwd~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~g~~l~~~s~~d~~i~v~~~~~~~ 294 (343)
T 3lrv_A 224 DNGYWMVVEC-DQ-----TVVCFDLRKDVGTLAYP---TYTIPEFKTGTVTYDIDDSGKNMIAYSNESNSLTIYKFDKKT 294 (343)
T ss_dssp TTSSEEEEEE-SS-----BEEEEETTSSTTCBSSC---CCBC-----CCEEEEECTTSSEEEEEETTTTEEEEEEECTTT
T ss_pred CCCCEEEEEe-CC-----eEEEEEcCCCCcceeec---ccccccccccceEEEECCCCCEEEEecCCCCcEEEEEEcccc
Confidence 355444444 44 89999887642111111 0000000001 23667777755555555 666777776 55
Q ss_pred CeEEE
Q 017748 332 HRVRS 336 (366)
Q Consensus 332 ~~~~~ 336 (366)
+.|+.
T Consensus 295 ~~~~~ 299 (343)
T 3lrv_A 295 KNWTK 299 (343)
T ss_dssp CSEEE
T ss_pred cceEe
Confidence 66876
|
| >2mad_H Methylamine dehydrogenase (heavy subunit); oxidoreductase(CHNH2(D)-deaminating); HET: TRQ; 2.25A {Paracoccus versutus} SCOP: b.69.2.1 PDB: 1mae_H* 1maf_H* | Back alignment and structure |
|---|
Probab=88.01 E-value=9.6 Score=33.90 Aligned_cols=75 Identities=8% Similarity=-0.055 Sum_probs=46.4
Q ss_pred CCeEEEEEeecCCC--CCCcEEEEEeccCCCCCceEEEEEeccCCCceeeEEEEecCCc-EEEEEe-eCCeEEEEeCCCC
Q 017748 257 GGCLCLLCKFDDDD--DDRPWDLWVMKEYGVNDSWTKLATLLNVGGGNVKPLVYSRSED-KVLLHA-VRGDLCWYDLERH 332 (366)
Q Consensus 257 ~g~L~l~~~~~~~~--~~~~l~iW~l~~~~~~~~W~~~~~i~~~~~~~~~~~~~~~~g~-~i~~~~-~~~~~~~yd~~t~ 332 (366)
+++||+.......+ ....=.||+++- .+...+.+|+.... ..-+.+..+|+ .++... .++.+.+||.+|+
T Consensus 278 ~~~lyV~~~~~~~~~~~~~~~~V~VID~----~t~~vv~~i~~g~~--p~~i~~s~Dg~~~l~v~~~~~~~V~ViD~~t~ 351 (373)
T 2mad_H 278 SDGIYLLTSEQSAWKLHAAAKEVTSVTG----LVGQTSSQISLGHD--VDAISVAQDGGPDLYALSAGTEVLHIYDAGAG 351 (373)
T ss_pred CCEEEEEeccCCcccccCCCCeEEEEEC----CCCEEEEEEECCCC--cCeEEECCCCCeEEEEEcCCCCeEEEEECCCC
Confidence 46777765422100 001236888886 45777788876543 55567778886 344444 2567999999998
Q ss_pred eEEEe
Q 017748 333 RVRSI 337 (366)
Q Consensus 333 ~~~~v 337 (366)
+....
T Consensus 352 ~vv~~ 356 (373)
T 2mad_H 352 DQDQS 356 (373)
T ss_pred CEEee
Confidence 87644
|
| >4aez_A CDC20, WD repeat-containing protein SLP1; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe} | Back alignment and structure |
|---|
Probab=87.99 E-value=14 Score=32.78 Aligned_cols=114 Identities=11% Similarity=0.112 Sum_probs=64.3
Q ss_pred CCcEEEEEeeCCCCCCCcEEEEEECCCceeeeeCCCCccCCCCceEEEEEE--CCeEEEEEe--ecCCCCCCcEEEEEec
Q 017748 206 NGALHWTAALNQDADRNDIIIAFDLKSEEFYQVPLPPIVGIEGYYILLEAL--GGCLCLLCK--FDDDDDDRPWDLWVMK 281 (366)
Q Consensus 206 ~G~lYw~~~~~~~~~~~~~i~~fD~~~~~~~~i~lP~~~~~~~~~~~l~~~--~g~L~l~~~--~~~~~~~~~l~iW~l~ 281 (366)
+|.....+..+ ..|..+|+.+.+.......... ....+... ++.+.+.+. .+. .+.+|-+.
T Consensus 228 ~~~~l~s~~~d------~~v~iwd~~~~~~~~~~~~~~~----~v~~~~~~p~~~~ll~~~~gs~d~-----~i~i~d~~ 292 (401)
T 4aez_A 228 DGLQLASGGND------NVVQIWDARSSIPKFTKTNHNA----AVKAVAWCPWQSNLLATGGGTMDK-----QIHFWNAA 292 (401)
T ss_dssp TSSEEEEEETT------SCEEEEETTCSSEEEEECCCSS----CCCEEEECTTSTTEEEEECCTTTC-----EEEEEETT
T ss_pred CCCEEEEEeCC------CeEEEccCCCCCccEEecCCcc----eEEEEEECCCCCCEEEEecCCCCC-----EEEEEECC
Confidence 45555544443 3699999987554332111111 12233333 234555443 233 89999887
Q ss_pred cCCCCCceEEEEEeccCCCceeeEEEEecCCcEEEEEe--eCCeEEEEeCCCCeEEEeeeecC
Q 017748 282 EYGVNDSWTKLATLLNVGGGNVKPLVYSRSEDKVLLHA--VRGDLCWYDLERHRVRSIVEIDD 342 (366)
Q Consensus 282 ~~~~~~~W~~~~~i~~~~~~~~~~~~~~~~g~~i~~~~--~~~~~~~yd~~t~~~~~v~~~~~ 342 (366)
.. ..+..+..... ..-+++..++..++... .++.+..||+.+++...+.++.+
T Consensus 293 ~~------~~~~~~~~~~~--v~~~~~s~~~~~l~~~~g~~dg~i~v~~~~~~~~~~~~~~~~ 347 (401)
T 4aez_A 293 TG------ARVNTVDAGSQ--VTSLIWSPHSKEIMSTHGFPDNNLSIWSYSSSGLTKQVDIPA 347 (401)
T ss_dssp TC------CEEEEEECSSC--EEEEEECSSSSEEEEEECTTTCEEEEEEEETTEEEEEEEEEC
T ss_pred CC------CEEEEEeCCCc--EEEEEECCCCCeEEEEeecCCCcEEEEecCCccceeEEEecC
Confidence 52 22333433222 45566677776666654 56789999999998877756654
|
| >1n7d_A LDL receptor, low-density lipoprotein receptor; familial hypercholesterolemia, cholestero metabolism, lipid transport; HET: NAG BMA MAN KEG; 3.70A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1 g.3.11.1 g.3.11.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 PDB: 2lgp_A 1xfe_A 1f5y_A 1ldl_A 1ldr_A 1d2j_A 1f8z_A | Back alignment and structure |
|---|
Probab=87.62 E-value=5.1 Score=39.21 Aligned_cols=137 Identities=16% Similarity=0.128 Sum_probs=69.4
Q ss_pred cEEEEEEecCCcEEEccCCCcceecCCcceEE---CCcEEEEEeeCCCCCCCcEEEEEECCCceeeee-----CCCCccC
Q 017748 174 TEVAVFSLRVNSWRRIQDFPYFWVTGTCSVFV---NGALHWTAALNQDADRNDIIIAFDLKSEEFYQV-----PLPPIVG 245 (366)
Q Consensus 174 ~~~~vyss~t~~W~~~~~~~~~~~~~~~~v~~---~G~lYw~~~~~~~~~~~~~i~~fD~~~~~~~~i-----~lP~~~~ 245 (366)
..+.+++.....-+.+..... ....++.+ +|.|||...... ..|..+|+.......+ ..|...
T Consensus 475 ~~I~v~d~dg~~~~~l~~~~~---~~P~giavDp~~g~ly~td~~~~-----~~I~~~~~dG~~~~~l~~~~l~~PnGl- 545 (699)
T 1n7d_A 475 GTVSVADTKGVKRKTLFREQG---SKPRAIVVDPVHGFMYWTDWGTP-----AKIKKGGLNGVDIYSLVTENIQWPNGI- 545 (699)
T ss_dssp SCEEEEBSSSCCEEEECCCSS---CCCCCEECCSSSSCCEECCCSSS-----CCEEBCCSSSCCCCEESCSSCSSCCCE-
T ss_pred CeEEEEecCCCceEEEEeCCC---CCcceEEEccCCCcEEEcccCCC-----CeEEEEeCCCCCeeEEEeCCCCCccEE-
Confidence 346677765544333321110 11234555 589999764321 2688888764333222 222221
Q ss_pred CCCceEEEEEECCeEEEEEeecCCCCCCcEEEEEeccCCCCCceEEEEEeccCCCceeeEEEEecCCcEEEEEeeC-CeE
Q 017748 246 IEGYYILLEALGGCLCLLCKFDDDDDDRPWDLWVMKEYGVNDSWTKLATLLNVGGGNVKPLVYSRSEDKVLLHAVR-GDL 324 (366)
Q Consensus 246 ~~~~~~~l~~~~g~L~l~~~~~~~~~~~~l~iW~l~~~~~~~~W~~~~~i~~~~~~~~~~~~~~~~g~~i~~~~~~-~~~ 324 (366)
.+...+++||++..... . |++++-.+. . +..+-........|.++..+++.||+.... .+|
T Consensus 546 ------avd~~~~~LY~aD~~~~-----~--I~~~d~dG~-~----~~~~~~~~~~~~~P~glavd~~~lywtd~~~~~V 607 (699)
T 1n7d_A 546 ------TLDLLSGRLYWVDSKLH-----S--ISSIDVNGG-N----RKTILEDEKRLAHPFSLAVFEDKVFWTDIINEAI 607 (699)
T ss_dssp ------EECTTTCCEEEEETTTT-----E--EEEECSSSS-C----CEEECCCSSSCSSCCCCEEETTEEEEECSTTTCE
T ss_pred ------EEeccCCEEEEEecCCC-----e--EEEEccCCC-c----eEEEEecCCcCCCceEeEEECCEEEEEeCCCCeE
Confidence 12223688988775432 3 444443321 1 112211100124565555555578887543 469
Q ss_pred EEEeCCCCeEEEe
Q 017748 325 CWYDLERHRVRSI 337 (366)
Q Consensus 325 ~~yd~~t~~~~~v 337 (366)
..+|+.+++...+
T Consensus 608 ~~~d~~~G~~~~~ 620 (699)
T 1n7d_A 608 FSANRLTGSDVNL 620 (699)
T ss_dssp EEEETTTEEEEEC
T ss_pred EEEEccCCCceEE
Confidence 9999998887655
|
| >2p4o_A Hypothetical protein; putative lactonase, structural genomics, joint center for ST genomics, JCSG, protein structure initiative, PSI-2; HET: MSE; 1.90A {Nostoc punctiforme} SCOP: b.68.6.3 | Back alignment and structure |
|---|
Probab=87.61 E-value=12 Score=31.83 Aligned_cols=107 Identities=13% Similarity=0.044 Sum_probs=60.5
Q ss_pred CCcEEEEEeeCCCCCCCcEEEEEECCCceeeeeCCCCccCCCCceEEEEEE-CCeEEEEEeecCCCCCCcEEEEEeccCC
Q 017748 206 NGALHWTAALNQDADRNDIIIAFDLKSEEFYQVPLPPIVGIEGYYILLEAL-GGCLCLLCKFDDDDDDRPWDLWVMKEYG 284 (366)
Q Consensus 206 ~G~lYw~~~~~~~~~~~~~i~~fD~~~~~~~~i~lP~~~~~~~~~~~l~~~-~g~L~l~~~~~~~~~~~~l~iW~l~~~~ 284 (366)
+|.+||..... ..|..+|...+.-..+..+.. -..++.. +|+|+++..... ...|+.++..
T Consensus 42 ~g~lyv~d~~~------~~I~~~d~~g~~~~~~~~~~~------p~gia~~~dG~l~vad~~~~-----~~~v~~~d~~- 103 (306)
T 2p4o_A 42 DGTIFVTNHEV------GEIVSITPDGNQQIHATVEGK------VSGLAFTSNGDLVATGWNAD-----SIPVVSLVKS- 103 (306)
T ss_dssp TSCEEEEETTT------TEEEEECTTCCEEEEEECSSE------EEEEEECTTSCEEEEEECTT-----SCEEEEEECT-
T ss_pred CCCEEEEeCCC------CeEEEECCCCceEEEEeCCCC------ceeEEEcCCCcEEEEeccCC-----cceEEEEcCC-
Confidence 68888886443 379999998764444444432 2223333 688887765332 4567776532
Q ss_pred CCCceEEEEEeccCCCceeeEEEEecCCcEEEEEe-eCCeEEEEeCCCCeE
Q 017748 285 VNDSWTKLATLLNVGGGNVKPLVYSRSEDKVLLHA-VRGDLCWYDLERHRV 334 (366)
Q Consensus 285 ~~~~W~~~~~i~~~~~~~~~~~~~~~~g~~i~~~~-~~~~~~~yd~~t~~~ 334 (366)
..+...+..++.... ..-.+.+.++ .+++.. ..+.++.+|+.+++.
T Consensus 104 -~g~~~~~~~~~~~~~--~~g~~~~~~~-~~~v~d~~~g~i~~~d~~~~~~ 150 (306)
T 2p4o_A 104 -DGTVETLLTLPDAIF--LNGITPLSDT-QYLTADSYRGAIWLIDVVQPSG 150 (306)
T ss_dssp -TSCEEEEEECTTCSC--EEEEEESSSS-EEEEEETTTTEEEEEETTTTEE
T ss_pred -CCeEEEEEeCCCccc--cCcccccCCC-cEEEEECCCCeEEEEeCCCCcE
Confidence 234555544432221 2223334444 666654 356799999987643
|
| >2ojh_A Uncharacterized protein ATU1656/AGR_C_3050; TOLB, 6-stranded beta-propeller, structural genomics, PSI-2; 1.85A {Agrobacterium tumefaciens str} | Back alignment and structure |
|---|
Probab=87.59 E-value=11 Score=31.11 Aligned_cols=194 Identities=11% Similarity=0.033 Sum_probs=96.1
Q ss_pred CCccEEEEEeccc-cceeecCCcCCCCCCCCcceEEEeeecCCCCeEEEEEEEEcCCCCccEEEEEEecCCcEEEccCCC
Q 017748 115 SRRNIMLLLNPLT-KRHRVLPTFYRDLSRCVPSLEGFGFDVGSGDFKLVKILAFGKPMNYTEVAVFSLRVNSWRRIQDFP 193 (366)
Q Consensus 115 ~~~~~~~V~NP~t-~~~~~LP~~~~~~~~~~~~~~~lg~d~~~~~ykvv~~~~~~~~~~~~~~~vyss~t~~W~~~~~~~ 193 (366)
....++ ++|..+ ++...+....... ....+.+.|. +.+ ++... ........+.+++..++.-+.+....
T Consensus 60 ~~~~i~-~~d~~~~~~~~~~~~~~~~~-----~~~~~~~spd-g~~-l~~~~--~~~~~~~~l~~~~~~~~~~~~~~~~~ 129 (297)
T 2ojh_A 60 SEGLLY-RLSLAGDPSPEKVDTGFATI-----CNNDHGISPD-GAL-YAISD--KVEFGKSAIYLLPSTGGTPRLMTKNL 129 (297)
T ss_dssp ETTEEE-EEESSSCCSCEECCCTTCCC-----BCSCCEECTT-SSE-EEEEE--CTTTSSCEEEEEETTCCCCEECCSSS
T ss_pred cCCeEE-EEeCCCCCCceEeccccccc-----cccceEECCC-CCE-EEEEE--eCCCCcceEEEEECCCCceEEeecCC
Confidence 345788 999999 8777665432110 1112344443 222 22221 11123456677776666655543322
Q ss_pred cceecCCcceEECCc-EEEEEeeCCCCCCCcEEEEEECCCceeeeeCCCCccCCCCceEEEEEE-CCeEEEEEeecCCCC
Q 017748 194 YFWVTGTCSVFVNGA-LHWTAALNQDADRNDIIIAFDLKSEEFYQVPLPPIVGIEGYYILLEAL-GGCLCLLCKFDDDDD 271 (366)
Q Consensus 194 ~~~~~~~~~v~~~G~-lYw~~~~~~~~~~~~~i~~fD~~~~~~~~i~lP~~~~~~~~~~~l~~~-~g~L~l~~~~~~~~~ 271 (366)
..... ...-+|. +++...... ...|..+|..+.+...+..... ....+... +|+..++......
T Consensus 130 ~~~~~---~~spdg~~l~~~~~~~~----~~~l~~~~~~~~~~~~~~~~~~-----~~~~~~~s~dg~~l~~~~~~~~-- 195 (297)
T 2ojh_A 130 PSYWH---GWSPDGKSFTYCGIRDQ----VFDIYSMDIDSGVETRLTHGEG-----RNDGPDYSPDGRWIYFNSSRTG-- 195 (297)
T ss_dssp SEEEE---EECTTSSEEEEEEEETT----EEEEEEEETTTCCEEECCCSSS-----CEEEEEECTTSSEEEEEECTTS--
T ss_pred Cccce---EECCCCCEEEEEECCCC----ceEEEEEECCCCcceEcccCCC-----ccccceECCCCCEEEEEecCCC--
Confidence 11100 0111454 443443321 1357777777666554422211 12223332 5654444443222
Q ss_pred CCcEEEEEeccCCCCCceEEEEEeccCCCceeeEEEEecCCcEEEEEeeC-----------CeEEEEeCCCCeEEEeeee
Q 017748 272 DRPWDLWVMKEYGVNDSWTKLATLLNVGGGNVKPLVYSRSEDKVLLHAVR-----------GDLCWYDLERHRVRSIVEI 340 (366)
Q Consensus 272 ~~~l~iW~l~~~~~~~~W~~~~~i~~~~~~~~~~~~~~~~g~~i~~~~~~-----------~~~~~yd~~t~~~~~v~~~ 340 (366)
.+.||.++..+ ... ..+.... .......+..+|..|++...+ ..++.||+++++.+.+..+
T Consensus 196 --~~~i~~~~~~~--~~~---~~~~~~~-~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~~~~~ 267 (297)
T 2ojh_A 196 --QMQIWRVRVDG--SSV---ERITDSA-YGDWFPHPSPSGDKVVFVSYDADVFDHPRDLDVRVQLMDMDGGNVETLFDL 267 (297)
T ss_dssp --SCEEEEEETTS--SCE---EECCCCS-EEEEEEEECTTSSEEEEEEEETTCCSCCSSEEEEEEEEETTSCSCEEEEEE
T ss_pred --CccEEEECCCC--CCc---EEEecCC-cccCCeEECCCCCEEEEEEcCCCCCcccccCceEEEEEecCCCCceeeecc
Confidence 78999997432 112 2222111 123345667788677776543 3599999999988777444
|
| >3hrp_A Uncharacterized protein; NP_812590.1, structural genomics protein of unknown function structural genomics; HET: MSE; 1.70A {Bacteroides thetaiotaomicron vpi-5482} | Back alignment and structure |
|---|
Probab=87.58 E-value=6.6 Score=35.44 Aligned_cols=111 Identities=8% Similarity=0.074 Sum_probs=62.5
Q ss_pred CCcEEEEEeeCCCCCCCcEEEEEECCCceeeeeCCCCccCCCCceEEEEEE-CC-eEEEEEeecCCCCCCcEEEEEeccC
Q 017748 206 NGALHWTAALNQDADRNDIIIAFDLKSEEFYQVPLPPIVGIEGYYILLEAL-GG-CLCLLCKFDDDDDDRPWDLWVMKEY 283 (366)
Q Consensus 206 ~G~lYw~~~~~~~~~~~~~i~~fD~~~~~~~~i~lP~~~~~~~~~~~l~~~-~g-~L~l~~~~~~~~~~~~l~iW~l~~~ 283 (366)
+|.+||..... ..|..+|+++.....+...... .. ++.. +| .|++..... .-.||.++..
T Consensus 141 ~g~lyv~d~~~------~~I~~id~~~g~~~~~~~~~~~----~~--ia~~~~g~~l~~~d~~~------~~~I~~~d~~ 202 (409)
T 3hrp_A 141 NNTVLAYQRDD------PRVRLISVDDNKVTTVHPGFKG----GK--PAVTKDKQRVYSIGWEG------THTVYVYMKA 202 (409)
T ss_dssp TTEEEEEETTT------TEEEEEETTTTEEEEEEETCCB----CB--CEECTTSSEEEEEBSST------TCEEEEEEGG
T ss_pred CCCEEEEecCC------CcEEEEECCCCEEEEeeccCCC----Cc--eeEecCCCcEEEEecCC------CceEEEEEcC
Confidence 58888887643 4899999998777665322111 11 2322 33 455444322 2267777764
Q ss_pred CCCCceE--EEEEeccCCCceeeEEEEecCCcEEEEEeeCCeEEEEeCCCCeEEEe
Q 017748 284 GVNDSWT--KLATLLNVGGGNVKPLVYSRSEDKVLLHAVRGDLCWYDLERHRVRSI 337 (366)
Q Consensus 284 ~~~~~W~--~~~~i~~~~~~~~~~~~~~~~g~~i~~~~~~~~~~~yd~~t~~~~~v 337 (366)
+ .|. .+..+.........-+++..+++.|++...+++++.||++++....+
T Consensus 203 ~---~~~~~~~g~~~~~~~~~p~~iav~p~~g~lyv~d~~~~I~~~d~~~~~~~~~ 255 (409)
T 3hrp_A 203 S---GWAPTRIGQLGSTFSGKIGAVALDETEEWLYFVDSNKNFGRFNVKTQEVTLI 255 (409)
T ss_dssp G---TTCEEEEEECCTTSCSCCCBCEECTTSSEEEEECTTCEEEEEETTTCCEEEE
T ss_pred C---CceeEEeeeccchhcCCcEEEEEeCCCCeEEEEECCCcEEEEECCCCCEEEE
Confidence 2 243 22222221111133456666445888866566799999998876554
|
| >1sq9_A Antiviral protein SKI8; WD repeat, beta-transducin repeat, WD40 repeat, beta propeller, recombination; 1.90A {Saccharomyces cerevisiae} SCOP: b.69.4.1 PDB: 1s4u_X | Back alignment and structure |
|---|
Probab=87.54 E-value=14 Score=32.35 Aligned_cols=99 Identities=12% Similarity=0.219 Sum_probs=53.7
Q ss_pred EEEEEECCCcee-eeeCCCCccC--------CCCceEEEEEE-CCeEEEEEeecCCCCCCcEEEEEeccCCCCCceEEEE
Q 017748 224 IIIAFDLKSEEF-YQVPLPPIVG--------IEGYYILLEAL-GGCLCLLCKFDDDDDDRPWDLWVMKEYGVNDSWTKLA 293 (366)
Q Consensus 224 ~i~~fD~~~~~~-~~i~lP~~~~--------~~~~~~~l~~~-~g~L~l~~~~~~~~~~~~l~iW~l~~~~~~~~W~~~~ 293 (366)
.|..+|+.+.+. ..+..|.... +......+... +|++.+....+. .+.||.+.. ...+.
T Consensus 259 ~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg-----~i~iwd~~~------~~~~~ 327 (397)
T 1sq9_A 259 CITLYETEFGERIGSLSVPTHSSQASLGEFAHSSWVMSLSFNDSGETLCSAGWDG-----KLRFWDVKT------KERIT 327 (397)
T ss_dssp EEEEEETTTCCEEEEECBC--------CCBSBSSCEEEEEECSSSSEEEEEETTS-----EEEEEETTT------TEEEE
T ss_pred eEEEEECCCCcccceeccCcccccccccccccCCcEEEEEECCCCCEEEEEeCCC-----eEEEEEcCC------CceeE
Confidence 799999987654 3333321100 11122333333 466655555444 899998865 23344
Q ss_pred Eec------cC--------------CCceeeEEEEecCC----------cEEEEEeeCCeEEEEeCCCCe
Q 017748 294 TLL------NV--------------GGGNVKPLVYSRSE----------DKVLLHAVRGDLCWYDLERHR 333 (366)
Q Consensus 294 ~i~------~~--------------~~~~~~~~~~~~~g----------~~i~~~~~~~~~~~yd~~t~~ 333 (366)
.+. .. .-....-+++..+| ..++....++.+..||+++++
T Consensus 328 ~~~~~~~~~~~~~~~~~g~~~~~~~~~~~v~~~~~~~~g~~~~~~~~~~~~l~s~~~dg~i~iw~~~~g~ 397 (397)
T 1sq9_A 328 TLNMHCDDIEIEEDILAVDEHGDSLAEPGVFDVKFLKKGWRSGMGADLNESLCCVCLDRSIRWFREAGGK 397 (397)
T ss_dssp EEECCGGGCSSGGGCCCBCTTSCBCSSCCEEEEEEECTTTSBSTTCTTSCEEEEEETTTEEEEEEEEC--
T ss_pred EEecccCcccchhhhhccccccccccCCceeEEEeccccccccccccccceEEEecCCCcEEEEEcCCCC
Confidence 444 11 01114445666665 356666778889999998874
|
| >4e54_B DNA damage-binding protein 2; beta barrel, double helix, DDB1:WD40 beta-barrel fold, DNA D DNA repair, HOST-virus interactions; HET: DNA 3DR; 2.85A {Homo sapiens} PDB: 3ei4_B* | Back alignment and structure |
|---|
Probab=87.45 E-value=16 Score=32.88 Aligned_cols=33 Identities=12% Similarity=0.109 Sum_probs=19.5
Q ss_pred eeEEEEecCCcEEEEEeeCCeEEEEeCCCCeEEE
Q 017748 303 VKPLVYSRSEDKVLLHAVRGDLCWYDLERHRVRS 336 (366)
Q Consensus 303 ~~~~~~~~~g~~i~~~~~~~~~~~yd~~t~~~~~ 336 (366)
....++.++| .++....++.+.++|+++++.++
T Consensus 403 ~s~~~fspdg-~~lasg~d~~i~iW~~~~gk~rK 435 (435)
T 4e54_B 403 SSLNEFNPMG-DTLASAMGYHILIWSQQEARTRK 435 (435)
T ss_dssp CCEEEECTTS-SCEEEECSSEEEECCCC------
T ss_pred EEEEEECCCC-CEEEEEcCCcEEEEECCcCeeeC
Confidence 3445677787 55556667789999999988764
|
| >2oiz_A Aromatic amine dehydrogenase, large subunit; oxidoreductase, tryptophan tryptophyl quinone, H-tunneling; HET: TRQ TSR PG4; 1.05A {Alcaligenes faecalis} PDB: 2agw_A* 2agx_A* 2agl_A* 2agz_A* 2ah0_A* 2ah1_A* 2hj4_A* 2hjb_A* 2i0t_A* 2iup_A* 2iuq_A* 2iur_A* 2iuv_A* 2agy_A* 2ok4_A* 2ok6_A* 2iaa_A* 2h47_A* 2h3x_A* 2hkr_A* ... | Back alignment and structure |
|---|
Probab=86.88 E-value=13 Score=32.70 Aligned_cols=76 Identities=14% Similarity=0.284 Sum_probs=45.1
Q ss_pred CCeEEEEEeecCC---CCCCcEEEEEeccCCCCCceEEEEEeccCCCceeeEEEEecCCcEEEEEeeCCeEEEEeCCCCe
Q 017748 257 GGCLCLLCKFDDD---DDDRPWDLWVMKEYGVNDSWTKLATLLNVGGGNVKPLVYSRSEDKVLLHAVRGDLCWYDLERHR 333 (366)
Q Consensus 257 ~g~L~l~~~~~~~---~~~~~l~iW~l~~~~~~~~W~~~~~i~~~~~~~~~~~~~~~~g~~i~~~~~~~~~~~yd~~t~~ 333 (366)
+++||++...+.. .....-.||+++- .+...+.+++... ..-+++..+|+.++.... +.+.+||++|++
T Consensus 265 g~~lyv~~~~~~~~~~~~~~~~~v~viD~----~t~~~v~~i~~~~---p~~ia~spdg~~l~v~n~-~~v~v~D~~t~~ 336 (361)
T 2oiz_A 265 SGRMYVFMHPDGKEGTHKFPAAEIWVMDT----KTKQRVARIPGRD---ALSMTIDQQRNLMLTLDG-GNVNVYDISQPE 336 (361)
T ss_dssp TTEEEEEEESSCCTTCTTCCCSEEEEEET----TTTEEEEEEECTT---CCEEEEETTTTEEEEECS-SCEEEEECSSSS
T ss_pred CCeEEEEEccCCCcccccCCCceEEEEEC----CCCcEEEEEecCC---eeEEEECCCCCEEEEeCC-CeEEEEECCCCc
Confidence 4677776541110 0001345666664 2345677776543 444667788866665554 679999999996
Q ss_pred EEEeeee
Q 017748 334 VRSIVEI 340 (366)
Q Consensus 334 ~~~v~~~ 340 (366)
++.+-.+
T Consensus 337 l~~~~~i 343 (361)
T 2oiz_A 337 PKLLRTI 343 (361)
T ss_dssp CEEEEEE
T ss_pred ceeeEEe
Confidence 6666333
|
| >3f3f_A Nucleoporin SEH1; structural protein, protein complex, nucleopori complex, nuclear pore complex, macromolecular assembly, MEM coat; 2.90A {Saccharomyces cerevisiae} PDB: 3f3g_A 3f3p_A 3ewe_A | Back alignment and structure |
|---|
Probab=86.38 E-value=14 Score=31.20 Aligned_cols=101 Identities=18% Similarity=0.267 Sum_probs=59.7
Q ss_pred EEEEEECCCc--eeeee-CCCCccCCCCceEEEEEEC---CeEEEEEeecCCCCCCcEEEEEeccCC---CCCceEEEEE
Q 017748 224 IIIAFDLKSE--EFYQV-PLPPIVGIEGYYILLEALG---GCLCLLCKFDDDDDDRPWDLWVMKEYG---VNDSWTKLAT 294 (366)
Q Consensus 224 ~i~~fD~~~~--~~~~i-~lP~~~~~~~~~~~l~~~~---g~L~l~~~~~~~~~~~~l~iW~l~~~~---~~~~W~~~~~ 294 (366)
.|..+|+.++ .+..+ .+... ......+.... |++.+.+..+. .+.+|-++... ....|..+..
T Consensus 34 ~i~iw~~~~~~~~~~~~~~~~~~---~~~v~~~~~~~~~d~~~l~s~~~dg-----~v~vwd~~~~~~~~~~~~~~~~~~ 105 (351)
T 3f3f_A 34 HIKVFKLDKDTSNWELSDSWRAH---DSSIVAIDWASPEYGRIIASASYDK-----TVKLWEEDPDQEECSGRRWNKLCT 105 (351)
T ss_dssp EEEEEEECSSSCCEEEEEEEECC---SSCEEEEEECCGGGCSEEEEEETTS-----CEEEEEECTTSCTTSSCSEEEEEE
T ss_pred eEEEEECCCCCCcceecceeccC---CCcEEEEEEcCCCCCCEEEEEcCCC-----eEEEEecCCCcccccccCcceeee
Confidence 6888888754 22222 11111 11223344433 66666666555 89999997642 1245777776
Q ss_pred eccCCCceeeEEEEecC--CcEEEEEeeCCeEEEEeCCCCe
Q 017748 295 LLNVGGGNVKPLVYSRS--EDKVLLHAVRGDLCWYDLERHR 333 (366)
Q Consensus 295 i~~~~~~~~~~~~~~~~--g~~i~~~~~~~~~~~yd~~t~~ 333 (366)
+.... ....-+.+..+ +..++....++.+..||+++++
T Consensus 106 ~~~~~-~~v~~~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~ 145 (351)
T 3f3f_A 106 LNDSK-GSLYSVKFAPAHLGLKLACLGNDGILRLYDALEPS 145 (351)
T ss_dssp ECCCS-SCEEEEEECCGGGCSEEEEEETTCEEEEEECSSTT
T ss_pred ecccC-CceeEEEEcCCCCCcEEEEecCCCcEEEecCCChH
Confidence 65322 11444556666 6566667778889999998776
|
| >1q7f_A NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL repeat, beta-propeller, translation; 1.95A {Drosophila melanogaster} SCOP: b.68.9.1 | Back alignment and structure |
|---|
Probab=86.28 E-value=13 Score=30.88 Aligned_cols=201 Identities=8% Similarity=0.040 Sum_probs=98.8
Q ss_pred eceeEEeec-CCccEEEEEeccccceeecCCcCCCCCCCCcceEEEeeecCCCCeEEEEEEEEcCCCCccEEEEEEecCC
Q 017748 106 CNGLLALED-SRRNIMLLLNPLTKRHRVLPTFYRDLSRCVPSLEGFGFDVGSGDFKLVKILAFGKPMNYTEVAVFSLRVN 184 (366)
Q Consensus 106 ~~Gll~~~~-~~~~~~~V~NP~t~~~~~LP~~~~~~~~~~~~~~~lg~d~~~~~ykvv~~~~~~~~~~~~~~~vyss~t~ 184 (366)
.+|-+.+.+ ....+. ++|+..+....++........ .....++.++...+. ++.... . ....+.+|+....
T Consensus 39 ~~g~l~v~~~~~~~i~-~~d~~g~~~~~~~~~~~~~~~-~~~p~~i~~~~~~g~--l~v~~~-~---~~~~i~~~d~~g~ 110 (286)
T 1q7f_A 39 AQNDIIVADTNNHRIQ-IFDKEGRFKFQFGECGKRDSQ-LLYPNRVAVVRNSGD--IIVTER-S---PTHQIQIYNQYGQ 110 (286)
T ss_dssp TTCCEEEEEGGGTEEE-EECTTSCEEEEECCBSSSTTC-BSSEEEEEEETTTTE--EEEEEC-G---GGCEEEEECTTSC
T ss_pred CCCCEEEEECCCCEEE-EECCCCcEEEEecccCCCccc-ccCceEEEEEcCCCe--EEEEcC-C---CCCEEEEECCCCc
Confidence 345554443 445677 889886665666543211111 223456666433332 222211 0 1245777774333
Q ss_pred cEEEccCCCcceecCCcceEE--CCcEEEEEeeCCCCCCCcEEEEEECCCceeeeeCCCCccCCCCceEEEEEE-CCeEE
Q 017748 185 SWRRIQDFPYFWVTGTCSVFV--NGALHWTAALNQDADRNDIIIAFDLKSEEFYQVPLPPIVGIEGYYILLEAL-GGCLC 261 (366)
Q Consensus 185 ~W~~~~~~~~~~~~~~~~v~~--~G~lYw~~~~~~~~~~~~~i~~fD~~~~~~~~i~lP~~~~~~~~~~~l~~~-~g~L~ 261 (366)
.-+.+..... ....++.+ +|.+|...... ..|..||...+....+..+... .....++.. +|+|+
T Consensus 111 ~~~~~~~~~~---~~~~~i~~~~~g~l~v~~~~~------~~i~~~~~~g~~~~~~~~~~~~---~~p~~i~~~~~g~l~ 178 (286)
T 1q7f_A 111 FVRKFGATIL---QHPRGVTVDNKGRIIVVECKV------MRVIIFDQNGNVLHKFGCSKHL---EFPNGVVVNDKQEIF 178 (286)
T ss_dssp EEEEECTTTC---SCEEEEEECTTSCEEEEETTT------TEEEEECTTSCEEEEEECTTTC---SSEEEEEECSSSEEE
T ss_pred EEEEecCccC---CCceEEEEeCCCCEEEEECCC------CEEEEEcCCCCEEEEeCCCCcc---CCcEEEEECCCCCEE
Confidence 2233321110 01123333 57766544332 3799999876665555433222 122234443 58888
Q ss_pred EEEeecCCCCCCcEEEEEeccCCCCCceEEEEEeccC-CCceeeEEEEecCCcEEEEEee-CC-eEEEEeCCCCeEEEee
Q 017748 262 LLCKFDDDDDDRPWDLWVMKEYGVNDSWTKLATLLNV-GGGNVKPLVYSRSEDKVLLHAV-RG-DLCWYDLERHRVRSIV 338 (366)
Q Consensus 262 l~~~~~~~~~~~~l~iW~l~~~~~~~~W~~~~~i~~~-~~~~~~~~~~~~~g~~i~~~~~-~~-~~~~yd~~t~~~~~v~ 338 (366)
+...... .+.+|-.+. .. +..+... .+....-+++..+| .+++... +. .+..||.+.+..+.+
T Consensus 179 v~~~~~~-----~i~~~~~~g-----~~--~~~~~~~g~~~~p~~i~~d~~G-~l~v~~~~~~~~i~~~~~~g~~~~~~- 244 (286)
T 1q7f_A 179 ISDNRAH-----CVKVFNYEG-----QY--LRQIGGEGITNYPIGVGINSNG-EILIADNHNNFNLTIFTQDGQLISAL- 244 (286)
T ss_dssp EEEGGGT-----EEEEEETTC-----CE--EEEESCTTTSCSEEEEEECTTC-CEEEEECSSSCEEEEECTTSCEEEEE-
T ss_pred EEECCCC-----EEEEEcCCC-----CE--EEEEccCCccCCCcEEEECCCC-CEEEEeCCCCEEEEEECCCCCEEEEE-
Confidence 7665444 677765321 12 2233322 12112234455566 7777664 33 799999887776666
Q ss_pred ee
Q 017748 339 EI 340 (366)
Q Consensus 339 ~~ 340 (366)
..
T Consensus 245 ~~ 246 (286)
T 1q7f_A 245 ES 246 (286)
T ss_dssp EE
T ss_pred cc
Confidence 44
|
| >3bg1_A Protein SEC13 homolog; NPC, transport, WD repeat, autocatalytic cleavage, mRNA transport, nuclear pore complex, nucleus, phosphoprotein; 3.00A {Homo sapiens} PDB: 3bg0_A | Back alignment and structure |
|---|
Probab=85.96 E-value=15 Score=31.26 Aligned_cols=54 Identities=15% Similarity=0.259 Sum_probs=32.7
Q ss_pred cEEEEEeccCCCCCceEEEEEeccCCCceeeEEEEecCC----cEEEEEeeCCeEEEEeCCC
Q 017748 274 PWDLWVMKEYGVNDSWTKLATLLNVGGGNVKPLVYSRSE----DKVLLHAVRGDLCWYDLER 331 (366)
Q Consensus 274 ~l~iW~l~~~~~~~~W~~~~~i~~~~~~~~~~~~~~~~g----~~i~~~~~~~~~~~yd~~t 331 (366)
.+.+|.++.. ..|..+..+.... ....-+++.+++ ..|+-...++.+..||+++
T Consensus 190 ~v~lWd~~~~---~~~~~~~~l~~h~-~~V~~v~~sp~~~~~~~~las~s~D~~v~iw~~~~ 247 (316)
T 3bg1_A 190 LIKLWKEEED---GQWKEEQKLEAHS-DWVRDVAWAPSIGLPTSTIASCSQDGRVFIWTCDD 247 (316)
T ss_dssp BCCEEEECTT---SCEEEEECCBCCS-SCEEEEECCCCSSCSCCEEEEEETTCEEEEEECSS
T ss_pred eEEEEEeCCC---CccceeeecccCC-CceEEEEecCCCCCCCceEEEEcCCCeEEEEEccC
Confidence 8999988642 3476665553211 113444555543 3455566777899999876
|
| >3iuj_A Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas punctata} PDB: 3iul_A 3ium_A 3ivm_A* 3iur_A* 3iun_A* 3iuq_A* 3muo_A* 3mun_A* | Back alignment and structure |
|---|
Probab=85.55 E-value=27 Score=33.79 Aligned_cols=143 Identities=11% Similarity=0.066 Sum_probs=76.0
Q ss_pred cEEEEEEecCC--cEEEccCCCcceecCCcce-EECCcEEEEEeeCCCCCCCcEEEEEECCCc---eeeeeCCCCccCCC
Q 017748 174 TEVAVFSLRVN--SWRRIQDFPYFWVTGTCSV-FVNGALHWTAALNQDADRNDIIIAFDLKSE---EFYQVPLPPIVGIE 247 (366)
Q Consensus 174 ~~~~vyss~t~--~W~~~~~~~~~~~~~~~~v-~~~G~lYw~~~~~~~~~~~~~i~~fD~~~~---~~~~i~lP~~~~~~ 247 (366)
..+.+++..++ .|+.+...... ....+ .-++.+|+++..+.. ...|+..|+.+. .|+.+ .|... .
T Consensus 259 ~~i~~~d~~~~~~~~~~l~~~~~~---~~~~~~~~g~~l~~~t~~~~~---~~~l~~~d~~~~~~~~~~~l-~~~~~--~ 329 (693)
T 3iuj_A 259 NRLYVKDLSQENAPLLTVQGDLDA---DVSLVDNKGSTLYLLTNRDAP---NRRLVTVDAANPGPAHWRDL-IPERQ--Q 329 (693)
T ss_dssp CEEEEEETTSTTCCCEEEECSSSS---CEEEEEEETTEEEEEECTTCT---TCEEEEEETTSCCGGGCEEE-ECCCS--S
T ss_pred cEEEEEECCCCCCceEEEeCCCCc---eEEEEeccCCEEEEEECCCCC---CCEEEEEeCCCCCccccEEE-ecCCC--C
Confidence 35556665443 56655322111 11112 235678887765321 258999999874 35554 22221 1
Q ss_pred CceEEEEEECCeEEEEEeecCCCCCCcEEEEEeccCCCCCceEEEEEeccCCCceeeEEEEecCCcEEEEEeeC----Ce
Q 017748 248 GYYILLEALGGCLCLLCKFDDDDDDRPWDLWVMKEYGVNDSWTKLATLLNVGGGNVKPLVYSRSEDKVLLHAVR----GD 323 (366)
Q Consensus 248 ~~~~~l~~~~g~L~l~~~~~~~~~~~~l~iW~l~~~~~~~~W~~~~~i~~~~~~~~~~~~~~~~g~~i~~~~~~----~~ 323 (366)
.. .+...++.|.+....+. .-.|++++-.+ .+.+ .+.....+....+....+++.+++...+ ..
T Consensus 330 -~~-~~s~~g~~lv~~~~~~g-----~~~l~~~d~~g---~~~~--~l~~p~~~~~~~~~~~~d~~~l~~~~ss~~tP~~ 397 (693)
T 3iuj_A 330 -VL-TVHSGSGYLFAEYMVDA-----TARVEQFDYEG---KRVR--EVALPGLGSVSGFNGKHDDPALYFGFENYAQPPT 397 (693)
T ss_dssp -CE-EEEEETTEEEEEEEETT-----EEEEEEECTTS---CEEE--EECCSSSSEEEECCCCTTCSCEEEEEECSSSCCE
T ss_pred -EE-EEEEECCEEEEEEEECC-----eeEEEEEECCC---CeeE--EeecCCCceEEeeecCCCCCEEEEEecCCCCCCE
Confidence 12 44555777877766654 44555555322 2433 3333221112222233466678877654 46
Q ss_pred EEEEeCCCCeEEEe
Q 017748 324 LCWYDLERHRVRSI 337 (366)
Q Consensus 324 ~~~yd~~t~~~~~v 337 (366)
++.||+++++.+.+
T Consensus 398 l~~~d~~~g~~~~l 411 (693)
T 3iuj_A 398 LYRFEPKSGAISLY 411 (693)
T ss_dssp EEEECTTTCCEEEE
T ss_pred EEEEECCCCeEEEE
Confidence 99999999987766
|
| >2dg1_A DRP35, lactonase; beta propeller, hydrolase; 1.72A {Staphylococcus aureus} SCOP: b.68.6.1 PDB: 2dg0_A 2dso_A | Back alignment and structure |
|---|
Probab=85.49 E-value=12 Score=31.95 Aligned_cols=115 Identities=12% Similarity=0.130 Sum_probs=59.6
Q ss_pred CCcEEEEEeeCCCCCCCcEEEEEECCCceeeeeCCCCccCCCCceEEEEEE-CCeEEEEEeecCCCCCCcEEEEEeccCC
Q 017748 206 NGALHWTAALNQDADRNDIIIAFDLKSEEFYQVPLPPIVGIEGYYILLEAL-GGCLCLLCKFDDDDDDRPWDLWVMKEYG 284 (366)
Q Consensus 206 ~G~lYw~~~~~~~~~~~~~i~~fD~~~~~~~~i~lP~~~~~~~~~~~l~~~-~g~L~l~~~~~~~~~~~~l~iW~l~~~~ 284 (366)
+|.+||..... ..|..+|+++.++..+..+... ....++.. +|+|+++...... . .-.|+.++..+
T Consensus 55 ~g~l~~~~~~~------~~i~~~d~~~~~~~~~~~~~~~----~~~~i~~~~dg~l~v~~~~~~~-~--~~~i~~~d~~~ 121 (333)
T 2dg1_A 55 QGQLFLLDVFE------GNIFKINPETKEIKRPFVSHKA----NPAAIKIHKDGRLFVCYLGDFK-S--TGGIFAATENG 121 (333)
T ss_dssp TSCEEEEETTT------CEEEEECTTTCCEEEEEECSSS----SEEEEEECTTSCEEEEECTTSS-S--CCEEEEECTTS
T ss_pred CCCEEEEECCC------CEEEEEeCCCCcEEEEeeCCCC----CcceEEECCCCcEEEEeCCCCC-C--CceEEEEeCCC
Confidence 58888776543 3799999998887665321111 22234443 6788876653310 0 12345554322
Q ss_pred CCCceEEEEEeccCCCceeeEEEEecCCcEEEEEeeC-------CeEEEEeCCCCeEEEe
Q 017748 285 VNDSWTKLATLLNVGGGNVKPLVYSRSEDKVLLHAVR-------GDLCWYDLERHRVRSI 337 (366)
Q Consensus 285 ~~~~W~~~~~i~~~~~~~~~~~~~~~~g~~i~~~~~~-------~~~~~yd~~t~~~~~v 337 (366)
. .-..... .........-+.+..+| .+++.... ..++.||+++++.+.+
T Consensus 122 ~--~~~~~~~-~~~~~~~~~~i~~d~~g-~l~v~~~~~~~~~~~~~l~~~~~~~~~~~~~ 177 (333)
T 2dg1_A 122 D--NLQDIIE-DLSTAYCIDDMVFDSKG-GFYFTDFRGYSTNPLGGVYYVSPDFRTVTPI 177 (333)
T ss_dssp C--SCEEEEC-SSSSCCCEEEEEECTTS-CEEEEECCCBTTBCCEEEEEECTTSCCEEEE
T ss_pred C--EEEEEEc-cCccCCcccceEECCCC-CEEEEeccccccCCCceEEEEeCCCCEEEEe
Confidence 1 1111111 11111112334555566 67776542 4599999988776654
|
| >3jro_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum, transport, membrane, mRNA transport; 4.00A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=85.19 E-value=23 Score=34.69 Aligned_cols=98 Identities=14% Similarity=0.293 Sum_probs=60.8
Q ss_pred EEEEEECCCceeeee-CCCCccCCCCceEEEEEE-C--CeEEEEEeecCCCCCCcEEEEEeccCCCCCceEEEEEeccCC
Q 017748 224 IIIAFDLKSEEFYQV-PLPPIVGIEGYYILLEAL-G--GCLCLLCKFDDDDDDRPWDLWVMKEYGVNDSWTKLATLLNVG 299 (366)
Q Consensus 224 ~i~~fD~~~~~~~~i-~lP~~~~~~~~~~~l~~~-~--g~L~l~~~~~~~~~~~~l~iW~l~~~~~~~~W~~~~~i~~~~ 299 (366)
.|..+|+.+++...+ .+.... .....+... + |.+.+.+..++ .+.+|-++. +.|..+..+....
T Consensus 32 ~I~vwd~~~~~~~~~~~l~~h~---~~V~~l~~s~~~~~~~l~s~s~Dg-----~I~vwd~~~----~~~~~~~~~~~h~ 99 (753)
T 3jro_A 32 TIKIFEVEGETHKLIDTLTGHE---GPVWRVDWAHPKFGTILASCSYDG-----KVLIWKEEN----GRWSQIAVHAVHS 99 (753)
T ss_dssp EEEEEEEETTEEEEEEEECCCS---SCEEEEEECCTTSCSEEEEEETTS-----CEEEEEEET----TEEEEEEEECCCS
T ss_pred cEEEEecCCCCCccceeccCCc---CceEEEEecCCCCCCEEEEEeCCC-----eEEEEECCC----CcccccccccCCC
Confidence 788888886665544 232221 122334433 2 66666666555 899999886 3476666664322
Q ss_pred CceeeEEEEecC--CcEEEEEeeCCeEEEEeCCCCeE
Q 017748 300 GGNVKPLVYSRS--EDKVLLHAVRGDLCWYDLERHRV 334 (366)
Q Consensus 300 ~~~~~~~~~~~~--g~~i~~~~~~~~~~~yd~~t~~~ 334 (366)
....-+.+.++ ++.++....++.+..||++++..
T Consensus 100 -~~V~~v~~sp~~~~~~l~sgs~dg~I~vwdl~~~~~ 135 (753)
T 3jro_A 100 -ASVNSVQWAPHEYGPLLLVASSDGKVSVVEFKENGT 135 (753)
T ss_dssp -SCEEEEEECCGGGCSEEEEEETTSEEEEEECCSSSC
T ss_pred -CCeEEEEECCCCCCCEEEEEeCCCcEEEEEeecCCC
Confidence 11445566666 65677777788899999998843
|
| >1kv9_A Type II quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM EPE; 1.90A {Pseudomonas putida} SCOP: a.3.1.6 b.70.1.1 | Back alignment and structure |
|---|
Probab=85.12 E-value=4.1 Score=39.65 Aligned_cols=123 Identities=15% Similarity=0.121 Sum_probs=65.1
Q ss_pred CcceEECCcEEEEEeeCCCCCCCcEEEEEECCCc--eeeee-CCCCccC----CCCceEEEEEECCeEEEEEeecCCCCC
Q 017748 200 TCSVFVNGALHWTAALNQDADRNDIIIAFDLKSE--EFYQV-PLPPIVG----IEGYYILLEALGGCLCLLCKFDDDDDD 272 (366)
Q Consensus 200 ~~~v~~~G~lYw~~~~~~~~~~~~~i~~fD~~~~--~~~~i-~lP~~~~----~~~~~~~l~~~~g~L~l~~~~~~~~~~ 272 (366)
..++..+|++|..+..+ .++++|.++. .|+.- ..+.... .......++..+|+|++... +
T Consensus 60 ~~P~v~~g~vyv~~~~~-------~v~AlD~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~~~-d----- 126 (668)
T 1kv9_A 60 ATPLFHDGVIYTSMSWS-------RVIAVDAASGKELWRYDPEVAKVKARTSCCDAVNRGVALWGDKVYVGTL-D----- 126 (668)
T ss_dssp CCCEEETTEEEEEEGGG-------EEEEEETTTCCEEEEECCCCCGGGGGGCTTCSCCCCCEEEBTEEEEECT-T-----
T ss_pred cCCEEECCEEEEECCCC-------eEEEEECCCChhceEECCCCCccccccccccCCccceEEECCEEEEEcC-C-----
Confidence 44788999999887654 7999998764 45432 2221110 00011223445777766532 1
Q ss_pred CcEEEEEeccCCCCCceEEEEEeccCCCc-eeeEEEEecCCcEEEEEee------CCeEEEEeCCCCeEEEeeee
Q 017748 273 RPWDLWVMKEYGVNDSWTKLATLLNVGGG-NVKPLVYSRSEDKVLLHAV------RGDLCWYDLERHRVRSIVEI 340 (366)
Q Consensus 273 ~~l~iW~l~~~~~~~~W~~~~~i~~~~~~-~~~~~~~~~~g~~i~~~~~------~~~~~~yd~~t~~~~~v~~~ 340 (366)
-.|..++....+..|.....-+..... ...|... ++ .|++... ++.+++||.+|++..+-++.
T Consensus 127 --g~l~alD~~tG~~~W~~~~~~~~~~~~~~~~P~v~--~~-~v~vg~~~~~~~~~g~v~a~D~~tG~~~W~~~~ 196 (668)
T 1kv9_A 127 --GRLIALDAKTGKAIWSQQTTDPAKPYSITGAPRVV--KG-KVIIGNGGAEYGVRGFVSAYDADTGKLAWRFYT 196 (668)
T ss_dssp --SEEEEEETTTCCEEEEEECSCTTSSCBCCSCCEEE--TT-EEEECCBCTTTCCBCEEEEEETTTCCEEEEEES
T ss_pred --CEEEEEECCCCCEeeeeccCCCCCcceecCCCEEE--CC-EEEEeCCCCCcCCCCEEEEEECCCCcEEEEecc
Confidence 124445533234557653210100000 1233332 33 7777643 35799999999997766443
|
| >4a11_B DNA excision repair protein ERCC-8; DNA binding protein, DNA damage repair; HET: DNA; 3.31A {Homo sapiens} | Back alignment and structure |
|---|
Probab=84.76 E-value=19 Score=31.36 Aligned_cols=100 Identities=6% Similarity=-0.001 Sum_probs=51.4
Q ss_pred EEEEEECCCceeeeeCCCCcc--CCCCceEEEEEECCeEEEEEeecCCCCCCcEEEEEeccCCCCCceEEEEEeccCCCc
Q 017748 224 IIIAFDLKSEEFYQVPLPPIV--GIEGYYILLEALGGCLCLLCKFDDDDDDRPWDLWVMKEYGVNDSWTKLATLLNVGGG 301 (366)
Q Consensus 224 ~i~~fD~~~~~~~~i~lP~~~--~~~~~~~~l~~~~g~L~l~~~~~~~~~~~~l~iW~l~~~~~~~~W~~~~~i~~~~~~ 301 (366)
.|..+|+.+.+-......... .............+...++...+. .+.+|.+... ..+..+.... +
T Consensus 268 ~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~i~v~d~~~~------~~~~~~~~~~-~ 335 (408)
T 4a11_B 268 RMRLWNSSNGENTLVNYGKVCNNSKKGLKFTVSCGCSSEFVFVPYGS-----TIAVYTVYSG------EQITMLKGHY-K 335 (408)
T ss_dssp CEEEEETTTCCBCCCCCCCCCCCCSSCCCCEECCSSSSCEEEEEETT-----EEEEEETTTC------CEEEEECCCS-S
T ss_pred eEEEEECCCCccceeccccccccccccceeEEecCCCceEEEEecCC-----EEEEEECcCC------cceeeeccCC-C
Confidence 699999987654332111110 001111122222233333344343 8889987652 2334443211 1
Q ss_pred eeeEEEEecCCcEEEEEeeCCeEEEEeCCCCeEE
Q 017748 302 NVKPLVYSRSEDKVLLHAVRGDLCWYDLERHRVR 335 (366)
Q Consensus 302 ~~~~~~~~~~g~~i~~~~~~~~~~~yd~~t~~~~ 335 (366)
...-+++..++..|+....++.+..||+++.+-.
T Consensus 336 ~v~~~~~s~~~~~l~s~~~dg~i~iw~~~~~~~~ 369 (408)
T 4a11_B 336 TVDCCVFQSNFQELYSGSRDCNILAWVPSLYEPV 369 (408)
T ss_dssp CEEEEEEETTTTEEEEEETTSCEEEEEECC----
T ss_pred eEEEEEEcCCCCEEEEECCCCeEEEEeCCCCCcc
Confidence 1455677788866666677778999999988654
|
| >2pm9_A Protein WEB1, protein transport protein SEC31; beta propeller; 3.30A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=84.64 E-value=17 Score=31.92 Aligned_cols=153 Identities=12% Similarity=0.096 Sum_probs=71.0
Q ss_pred eEEeecCCccEEEEEeccccceeecCCcCCCCCCCCcceEEEeeecCCCCeEEEEEEEEcCCCCccEEEEEEecCCcEEE
Q 017748 109 LLALEDSRRNIMLLLNPLTKRHRVLPTFYRDLSRCVPSLEGFGFDVGSGDFKLVKILAFGKPMNYTEVAVFSLRVNSWRR 188 (366)
Q Consensus 109 ll~~~~~~~~~~~V~NP~t~~~~~LP~~~~~~~~~~~~~~~lg~d~~~~~ykvv~~~~~~~~~~~~~~~vyss~t~~W~~ 188 (366)
++.....+..+. +||..+++....-...............+.+.|....+ ++.... + .....+.+|+.+++.-.
T Consensus 180 ~l~~~~~dg~v~-iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~-l~~~~~-d--~~~~~i~~~d~~~~~~~- 253 (416)
T 2pm9_A 180 VFASAGSSNFAS-IWDLKAKKEVIHLSYTSPNSGIKQQLSVVEWHPKNSTR-VATATG-S--DNDPSILIWDLRNANTP- 253 (416)
T ss_dssp EEEEESSSSCEE-EEETTTTEEEEEECCCCCSSCCCCCEEEEEECSSCTTE-EEEEEC-C--SSSCCCCEEETTSTTSC-
T ss_pred EEEEEcCCCCEE-EEECCCCCcceEEeccccccccCCceEEEEECCCCCCE-EEEEEC-C--CCCceEEEEeCCCCCCC-
Confidence 444444566788 99988876543222211100001234566676653333 333221 1 11126788888764210
Q ss_pred ccCCCcceecCCcceEE---CCcEEEEEeeCCCCCCCcEEEEEECCCcee-eeeCCCCccCCCCceEEEEEE-CC-eEEE
Q 017748 189 IQDFPYFWVTGTCSVFV---NGALHWTAALNQDADRNDIIIAFDLKSEEF-YQVPLPPIVGIEGYYILLEAL-GG-CLCL 262 (366)
Q Consensus 189 ~~~~~~~~~~~~~~v~~---~G~lYw~~~~~~~~~~~~~i~~fD~~~~~~-~~i~lP~~~~~~~~~~~l~~~-~g-~L~l 262 (366)
+..+.......-.++.+ +|.+...+..+ ..|..+|+.+.+. ..+...... ...+... +| ++.+
T Consensus 254 ~~~~~~~~~~~v~~~~~s~~~~~~l~s~~~d------g~v~~wd~~~~~~~~~~~~~~~~-----v~~~~~s~~~~~~l~ 322 (416)
T 2pm9_A 254 LQTLNQGHQKGILSLDWCHQDEHLLLSSGRD------NTVLLWNPESAEQLSQFPARGNW-----CFKTKFAPEAPDLFA 322 (416)
T ss_dssp SBCCCSCCSSCEEEEEECSSCSSCEEEEESS------SEEEEECSSSCCEEEEEECSSSC-----CCCEEECTTCTTEEE
T ss_pred cEEeecCccCceeEEEeCCCCCCeEEEEeCC------CCEEEeeCCCCccceeecCCCCc-----eEEEEECCCCCCEEE
Confidence 00111000011112322 45555555443 3799999987644 222322211 1122332 34 5555
Q ss_pred EEeecCCCCCCcEEEEEeccC
Q 017748 263 LCKFDDDDDDRPWDLWVMKEY 283 (366)
Q Consensus 263 ~~~~~~~~~~~~l~iW~l~~~ 283 (366)
....+. .+.||.++..
T Consensus 323 s~~~d~-----~i~iw~~~~~ 338 (416)
T 2pm9_A 323 CASFDN-----KIEVQTLQNL 338 (416)
T ss_dssp ECCSSS-----EEEEEESCCC
T ss_pred EEecCC-----cEEEEEccCC
Confidence 555444 8999998764
|
| >1yiq_A Quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM; 2.20A {Pseudomonas putida} | Back alignment and structure |
|---|
Probab=84.64 E-value=5.4 Score=38.94 Aligned_cols=122 Identities=15% Similarity=0.098 Sum_probs=64.7
Q ss_pred CcceEECCcEEEEEeeCCCCCCCcEEEEEECCCc--eeeee-CCCCcc----CCCCceEEEEEECCeEEEEEeecCCCCC
Q 017748 200 TCSVFVNGALHWTAALNQDADRNDIIIAFDLKSE--EFYQV-PLPPIV----GIEGYYILLEALGGCLCLLCKFDDDDDD 272 (366)
Q Consensus 200 ~~~v~~~G~lYw~~~~~~~~~~~~~i~~fD~~~~--~~~~i-~lP~~~----~~~~~~~~l~~~~g~L~l~~~~~~~~~~ 272 (366)
..++..+|.+|..+... .|.++|.++. .|+.- ..+... .+......++..+|+|++... +.
T Consensus 64 ~~P~v~~g~vyv~~~~~-------~v~AlD~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~g~v~v~~~-dg---- 131 (689)
T 1yiq_A 64 ATPIVVDGVMYTTGPFS-------VVYALDARDGRLIWKYDPQSDRHRAGEACCDAVNRGVAVWKGKVYVGVL-DG---- 131 (689)
T ss_dssp CCCEEETTEEEEECGGG-------CEEEEETTTCCEEEEECCCCCGGGGGGCTTCSCCCCCEEETTEEEEECT-TS----
T ss_pred ecCEEECCEEEEEcCCC-------eEEEEECCCCceeEEEcCCCCccccccccccCCCCccEEECCEEEEEcc-CC----
Confidence 44788999999877644 6999998764 55432 222110 000011223456777776542 11
Q ss_pred CcEEEEEeccCCCCCceEEEEEeccCC-Cc-eeeEEEEecCCcEEEEEee------CCeEEEEeCCCCeEEEeee
Q 017748 273 RPWDLWVMKEYGVNDSWTKLATLLNVG-GG-NVKPLVYSRSEDKVLLHAV------RGDLCWYDLERHRVRSIVE 339 (366)
Q Consensus 273 ~~l~iW~l~~~~~~~~W~~~~~i~~~~-~~-~~~~~~~~~~g~~i~~~~~------~~~~~~yd~~t~~~~~v~~ 339 (366)
. |..++....+..|......+... .. ...|... ++ .|++... ++.+++||.+|++..+-++
T Consensus 132 -~--l~AlDa~TG~~~W~~~~~~~~~~~~~~~~sP~v~--~g-~v~vg~~~~~~~~~g~v~a~D~~tG~~~W~~~ 200 (689)
T 1yiq_A 132 -R--LEAIDAKTGQRAWSVDTRADHKRSYTITGAPRVV--NG-KVVIGNGGAEFGVRGYVTAYDAETGKEAWRFY 200 (689)
T ss_dssp -E--EEEEETTTCCEEEEEECCSCTTSCCBCCSCCEEE--TT-EEEECCBCTTTCCBCEEEEEETTTCCEEEEEE
T ss_pred -E--EEEEECCCCCEeeeecCcCCCCCCccccCCcEEE--CC-EEEEEeCCCccCCCCEEEEEECCCCcEEEEec
Confidence 2 33444332345576543211111 00 1334332 34 7777543 3579999999999766534
|
| >3scy_A Hypothetical bacterial 6-phosphogluconolactonase; 7-bladed beta-propeller, structural genomics, joint center F structural genomics, JCSG; HET: MSE; 1.50A {Bacteroides fragilis} PDB: 3fgb_A | Back alignment and structure |
|---|
Probab=84.62 E-value=19 Score=31.16 Aligned_cols=144 Identities=7% Similarity=0.073 Sum_probs=66.7
Q ss_pred EEEEEE--ecCCcEEEccCCCcceecCCcceEE--CCc-EEEEEeeCCCCCCCcEEEE--EECCCceeeee-CCCCccCC
Q 017748 175 EVAVFS--LRVNSWRRIQDFPYFWVTGTCSVFV--NGA-LHWTAALNQDADRNDIIIA--FDLKSEEFYQV-PLPPIVGI 246 (366)
Q Consensus 175 ~~~vys--s~t~~W~~~~~~~~~~~~~~~~v~~--~G~-lYw~~~~~~~~~~~~~i~~--fD~~~~~~~~i-~lP~~~~~ 246 (366)
.+.+|. ..++..+.+... .. .....+.+ +|. +|....... .. ..+.. +|..+.+...+ ..+...
T Consensus 28 ~i~~~~~d~~~g~~~~~~~~--~~-~~p~~l~~spdg~~l~~~~~~~~-~~--~~v~~~~~~~~~g~~~~~~~~~~~~-- 99 (361)
T 3scy_A 28 GIYTFRFNEETGESLPLSDA--EV-ANPSYLIPSADGKFVYSVNEFSK-DQ--AAVSAFAFDKEKGTLHLLNTQKTMG-- 99 (361)
T ss_dssp EEEEEEEETTTCCEEEEEEE--EC-SCCCSEEECTTSSEEEEEECCSS-TT--CEEEEEEEETTTTEEEEEEEEECSS--
T ss_pred CEEEEEEeCCCCCEEEeecc--cC-CCCceEEECCCCCEEEEEEccCC-CC--CcEEEEEEeCCCCcEEEeeEeccCC--
Confidence 455554 466777665432 11 11112332 465 555544311 01 24544 45554666555 333221
Q ss_pred CCceEEEEEECCeEEEEEeecCCCCCCcEEEEEeccCCCCCceEEEEEec-cCC------CceeeEEEEecCCcEEEEEe
Q 017748 247 EGYYILLEALGGCLCLLCKFDDDDDDRPWDLWVMKEYGVNDSWTKLATLL-NVG------GGNVKPLVYSRSEDKVLLHA 319 (366)
Q Consensus 247 ~~~~~~l~~~~g~L~l~~~~~~~~~~~~l~iW~l~~~~~~~~W~~~~~i~-~~~------~~~~~~~~~~~~g~~i~~~~ 319 (366)
.....+.. +|+..++...... .+.+|.++..+.-.......... ... ....+-+++.++|+.+++..
T Consensus 100 -~~p~~~~~-dg~~l~~~~~~~~----~v~~~~~~~~g~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~spdg~~l~~~~ 173 (361)
T 3scy_A 100 -ADPCYLTT-NGKNIVTANYSGG----SITVFPIGQDGALLPASDVIEFKGSGPDKERQTMPHLHCVRITPDGKYLLADD 173 (361)
T ss_dssp -SCEEEEEE-CSSEEEEEETTTT----EEEEEEBCTTSCBCSCSEEEECCCCCSCTTTCSSCCEEEEEECTTSSEEEEEE
T ss_pred -CCcEEEEE-CCCEEEEEECCCC----EEEEEEeCCCCcCcccceeEEccCCCCCccccCCCcceEEEECCCCCEEEEEe
Confidence 12233444 7765444443332 89999997643211111111111 000 00124467778886677765
Q ss_pred e-CCeEEEEeCCCC
Q 017748 320 V-RGDLCWYDLERH 332 (366)
Q Consensus 320 ~-~~~~~~yd~~t~ 332 (366)
. ++.+..|++...
T Consensus 174 ~~~~~v~v~~~~~~ 187 (361)
T 3scy_A 174 LGTDQIHKFNINPN 187 (361)
T ss_dssp TTTTEEEEEEECTT
T ss_pred CCCCEEEEEEEcCC
Confidence 4 456778876643
|
| >3dwl_C Actin-related protein 2/3 complex subunit 1; propellor, actin-binding, ATP-binding, cytoskeleton, nucleot binding, WD repeat; HET: ATP; 3.78A {Schizosaccharomyces pombe} | Back alignment and structure |
|---|
Probab=84.51 E-value=3.3 Score=36.34 Aligned_cols=142 Identities=8% Similarity=0.009 Sum_probs=70.4
Q ss_pred ccEEEEEEecCCcEEEccCCCcceecCCcceEE--CCcEEEEEeeCCCCCCCcEEEEEECCCce-eeee-CCCCccCCCC
Q 017748 173 YTEVAVFSLRVNSWRRIQDFPYFWVTGTCSVFV--NGALHWTAALNQDADRNDIIIAFDLKSEE-FYQV-PLPPIVGIEG 248 (366)
Q Consensus 173 ~~~~~vyss~t~~W~~~~~~~~~~~~~~~~v~~--~G~lYw~~~~~~~~~~~~~i~~fD~~~~~-~~~i-~lP~~~~~~~ 248 (366)
...+.+|+..++.|+.+..+...... -.++.+ +|.+...+..+ ..|..+|+.++. +... .+.... .
T Consensus 32 d~~i~iw~~~~~~~~~~~~~~~h~~~-v~~~~~s~~~~~l~s~s~d------~~v~vwd~~~~~~~~~~~~~~~~~---~ 101 (377)
T 3dwl_C 32 TNQVELYEQDGNGWKHARTFSDHDKI-VTCVDWAPKSNRIVTCSQD------RNAYVYEKRPDGTWKQTLVLLRLN---R 101 (377)
T ss_dssp SSCBCEEEEETTEEEECCCBCCCSSC-EEEEEECTTTCCEEEEETT------SSEEEC------CCCCEEECCCCS---S
T ss_pred CCEEEEEEccCCceEEEEEEecCCce-EEEEEEeCCCCEEEEEeCC------CeEEEEEcCCCCceeeeeEecccC---C
Confidence 44678888888888776544322110 011222 34433333322 258888988776 3322 222111 1
Q ss_pred ceEEEEEE-CCeEEEEEeecCCCCCCcEEEEEeccCCCCCceEEEEEeccCCCceeeEEEEecCCcEEEEEeeCCeEEEE
Q 017748 249 YYILLEAL-GGCLCLLCKFDDDDDDRPWDLWVMKEYGVNDSWTKLATLLNVGGGNVKPLVYSRSEDKVLLHAVRGDLCWY 327 (366)
Q Consensus 249 ~~~~l~~~-~g~L~l~~~~~~~~~~~~l~iW~l~~~~~~~~W~~~~~i~~~~~~~~~~~~~~~~g~~i~~~~~~~~~~~y 327 (366)
....+... +|++.+.+..+. .+.+|.++.. ..|.....+....-....-+.+..++..++....++.+..|
T Consensus 102 ~v~~~~~~~~~~~l~~~~~d~-----~i~iwd~~~~---~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~~d~~i~iw 173 (377)
T 3dwl_C 102 AATFVRWSPNEDKFAVGSGAR-----VISVCYFEQE---NDWWVSKHLKRPLRSTILSLDWHPNNVLLAAGCADRKAYVL 173 (377)
T ss_dssp CEEEEECCTTSSCCEEEESSS-----CEEECCC--------CCCCEEECSSCCSCEEEEEECTTSSEEEEEESSSCEEEE
T ss_pred ceEEEEECCCCCEEEEEecCC-----eEEEEEECCc---ccceeeeEeecccCCCeEEEEEcCCCCEEEEEeCCCEEEEE
Confidence 12223332 466655555554 8999988763 33655555543111124556677777666667777789999
Q ss_pred eCCCC
Q 017748 328 DLERH 332 (366)
Q Consensus 328 d~~t~ 332 (366)
|++++
T Consensus 174 d~~~~ 178 (377)
T 3dwl_C 174 SAYVR 178 (377)
T ss_dssp EECCS
T ss_pred EEEec
Confidence 98643
|
| >3hfq_A Uncharacterized protein LP_2219; Q88V64_lacpl, NESG, LPR118, structural genomics, PSI-2, protein structure initiative; 1.96A {Lactobacillus plantarum} | Back alignment and structure |
|---|
Probab=84.37 E-value=19 Score=30.93 Aligned_cols=169 Identities=12% Similarity=0.109 Sum_probs=86.3
Q ss_pred eEEEeeecCCCCeEEEEEEEEcCCCCccEEEEEEec-CCcEEEccCCCcceecCCcceE--ECCcEEEEEeeCCCCCCCc
Q 017748 147 LEGFGFDVGSGDFKLVKILAFGKPMNYTEVAVFSLR-VNSWRRIQDFPYFWVTGTCSVF--VNGALHWTAALNQDADRND 223 (366)
Q Consensus 147 ~~~lg~d~~~~~ykvv~~~~~~~~~~~~~~~vyss~-t~~W~~~~~~~~~~~~~~~~v~--~~G~lYw~~~~~~~~~~~~ 223 (366)
...+.++|... ++... . ....+.+|+.. ++..................+. -+|...+++.... .
T Consensus 143 ~~~~~~spdg~---l~v~~---~--~~~~v~~~~~~~~g~~~~~~~~~~~~g~~p~~~~~spdg~~l~v~~~~~-----~ 209 (347)
T 3hfq_A 143 IHYTDLTPDNR---LAVID---L--GSDKVYVYNVSDAGQLSEQSVLTMEAGFGPRHLVFSPDGQYAFLAGELS-----S 209 (347)
T ss_dssp EEEEEECTTSC---EEEEE---T--TTTEEEEEEECTTSCEEEEEEEECCTTCCEEEEEECTTSSEEEEEETTT-----T
T ss_pred ceEEEECCCCc---EEEEe---C--CCCEEEEEEECCCCcEEEeeeEEcCCCCCCceEEECCCCCEEEEEeCCC-----C
Confidence 45577777543 33221 1 13468889887 5665543211110000011122 3576333433322 2
Q ss_pred EEEEEECC--Cceeeee----CCCCccCCCCceEEEEEE-CCe-EEEEEeecCCCCCCcEEEEEeccCCCCCceEEEEEe
Q 017748 224 IIIAFDLK--SEEFYQV----PLPPIVGIEGYYILLEAL-GGC-LCLLCKFDDDDDDRPWDLWVMKEYGVNDSWTKLATL 295 (366)
Q Consensus 224 ~i~~fD~~--~~~~~~i----~lP~~~~~~~~~~~l~~~-~g~-L~l~~~~~~~~~~~~l~iW~l~~~~~~~~W~~~~~i 295 (366)
.+..||+. +.++..+ ..|...........++.. +|+ |++...... .+.+|.++.. +.+..+..+
T Consensus 210 ~v~v~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~~spdG~~l~v~~~~~~-----~v~v~~~~~~---g~~~~~~~~ 281 (347)
T 3hfq_A 210 QIASLKYDTQTGAFTQLGIVKTIPADYTAHNGAAAIRLSHDGHFLYVSNRGYN-----TLAVFAVTAD---GHLTLIQQI 281 (347)
T ss_dssp EEEEEEEETTTTEEEEEEEEESSCTTCCSCCEEEEEEECTTSCEEEEEEETTT-----EEEEEEECGG---GCEEEEEEE
T ss_pred EEEEEEecCCCCceEEeeeeeecCCCCCCCCcceeEEECCCCCEEEEEeCCCC-----EEEEEEECCC---CcEEEeEEE
Confidence 45555554 4665433 334322111122233333 565 555444333 8999999853 246666666
Q ss_pred ccCCCceeeEEEEecCCcEEEEEeeC-CeEEEE--eCCCCeEEEe
Q 017748 296 LNVGGGNVKPLVYSRSEDKVLLHAVR-GDLCWY--DLERHRVRSI 337 (366)
Q Consensus 296 ~~~~~~~~~~~~~~~~g~~i~~~~~~-~~~~~y--d~~t~~~~~v 337 (366)
+... ....-+++.++|+.|++...+ +.+..| |.++++++.+
T Consensus 282 ~~~~-~~~~~~~~spdg~~l~v~~~~~~~v~v~~~d~~tg~l~~~ 325 (347)
T 3hfq_A 282 STEG-DFPRDFDLDPTEAFVVVVNQNTDNATLYARDLTSGKLSLL 325 (347)
T ss_dssp ECSS-SCCCEEEECTTSSEEEEEETTTTEEEEEEECTTTCCEEEE
T ss_pred ecCC-CCcCeEEECCCCCEEEEEEcCCCcEEEEEEeCCCCeEEec
Confidence 5421 114456777888667776544 556666 8899999877
|
| >1kb0_A Quinohemoprotein alcohol dehydrogenase; beta-propeller fold, cytochrome C, oxidoreductase; HET: TRO HEC PQQ; 1.44A {Comamonas testosteroni} SCOP: a.3.1.6 b.70.1.1 | Back alignment and structure |
|---|
Probab=84.27 E-value=3.8 Score=39.96 Aligned_cols=122 Identities=16% Similarity=0.102 Sum_probs=65.0
Q ss_pred CcceEECCcEEEEEeeCCCCCCCcEEEEEECCCce--eeeeCCCCccC------CCCceEEEEEECCeEEEEEeecCCCC
Q 017748 200 TCSVFVNGALHWTAALNQDADRNDIIIAFDLKSEE--FYQVPLPPIVG------IEGYYILLEALGGCLCLLCKFDDDDD 271 (366)
Q Consensus 200 ~~~v~~~G~lYw~~~~~~~~~~~~~i~~fD~~~~~--~~~i~lP~~~~------~~~~~~~l~~~~g~L~l~~~~~~~~~ 271 (366)
..++..+|.+|..+..+ .|.++|.++.+ |+. +++.... .......++..+|+|++.... .
T Consensus 71 ~~P~v~~g~vyv~~~~~-------~v~AlD~~tG~~~W~~-~~~~~~~~~~~~~~~~~~~~~a~~~~~v~v~~~d-g--- 138 (677)
T 1kb0_A 71 ATPVVVDGIMYVSASWS-------VVHAIDTRTGNRIWTY-DPQIDRSTGFKGCCDVVNRGVALWKGKVYVGAWD-G--- 138 (677)
T ss_dssp CCCEEETTEEEEECGGG-------CEEEEETTTTEEEEEE-CCCCCGGGGGGSSSCSCCCCCEEETTEEEEECTT-S---
T ss_pred eCCEEECCEEEEECCCC-------eEEEEECCCCcEEEEE-cCCCCccccccccccCCCCCceEECCEEEEEcCC-C---
Confidence 44788999999887644 69999998754 443 2221110 000112344567777765321 1
Q ss_pred CCcEEEEEeccCCCCCceEEEEEeccCC-Cc-eeeEEEEecCCcEEEEEee------CCeEEEEeCCCCeEEEeeee
Q 017748 272 DRPWDLWVMKEYGVNDSWTKLATLLNVG-GG-NVKPLVYSRSEDKVLLHAV------RGDLCWYDLERHRVRSIVEI 340 (366)
Q Consensus 272 ~~~l~iW~l~~~~~~~~W~~~~~i~~~~-~~-~~~~~~~~~~g~~i~~~~~------~~~~~~yd~~t~~~~~v~~~ 340 (366)
. |..|+-...+..|.......... .. ...|... ++.|++... ++.+++||.+|++..+-++.
T Consensus 139 --~--l~alD~~tG~~~W~~~~~~~~~~~~~~~~~p~v~---~~~v~v~~~~~~~~~~g~v~a~D~~tG~~~W~~~~ 208 (677)
T 1kb0_A 139 --R--LIALDAATGKEVWHQNTFEGQKGSLTITGAPRVF---KGKVIIGNGGAEYGVRGYITAYDAETGERKWRWFS 208 (677)
T ss_dssp --E--EEEEETTTCCEEEEEETTTTCCSSCBCCSCCEEE---TTEEEECCBCTTTCCBCEEEEEETTTCCEEEEEES
T ss_pred --E--EEEEECCCCCEEeeecCCcCcCcCcccccCcEEE---CCEEEEEecccccCCCCEEEEEECCCCcEEEEecc
Confidence 2 33444322334566521100000 00 1233332 337777654 45799999999997765444
|
| >3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A* | Back alignment and structure |
|---|
Probab=84.02 E-value=11 Score=39.35 Aligned_cols=186 Identities=9% Similarity=0.080 Sum_probs=92.9
Q ss_pred eeEEeecCCccEEEEEeccccceeecCCcCCCCCCCCcceEEEeeecCCCCeEEEEEEEEcCCCCccEEEEEEecCCcEE
Q 017748 108 GLLALEDSRRNIMLLLNPLTKRHRVLPTFYRDLSRCVPSLEGFGFDVGSGDFKLVKILAFGKPMNYTEVAVFSLRVNSWR 187 (366)
Q Consensus 108 Gll~~~~~~~~~~~V~NP~t~~~~~LP~~~~~~~~~~~~~~~lg~d~~~~~ykvv~~~~~~~~~~~~~~~vyss~t~~W~ 187 (366)
.++........+. ++|..+++......... .....+.+.+. +.+-+.+ . ....+.+++..++...
T Consensus 974 ~~l~~g~~~g~i~-i~d~~~~~~~~~~~~h~------~~v~~l~~s~d-g~~l~s~-~------~dg~i~vwd~~~~~~~ 1038 (1249)
T 3sfz_A 974 EYVAFGDEDGAIK-IIELPNNRVFSSGVGHK------KAVRHIQFTAD-GKTLISS-S------EDSVIQVWNWQTGDYV 1038 (1249)
T ss_dssp SEEEEEETTSCCE-EEETTTTSCEEECCCCS------SCCCCEEECSS-SSCEEEE-C------SSSBEEEEETTTTEEE
T ss_pred CEEEEEcCCCCEE-EEEcCCCceeeecccCC------CceEEEEECCC-CCEEEEE-c------CCCEEEEEECCCCceE
Confidence 3444444556677 88887776544222111 11223444443 2222221 1 1456888998887766
Q ss_pred EccCCCcceecCCcceEE-CCcEEEEEeeCCCCCCCcEEEEEECCCceeee-eCCCCccCCCCceEEEEEE-CCeEEEEE
Q 017748 188 RIQDFPYFWVTGTCSVFV-NGALHWTAALNQDADRNDIIIAFDLKSEEFYQ-VPLPPIVGIEGYYILLEAL-GGCLCLLC 264 (366)
Q Consensus 188 ~~~~~~~~~~~~~~~v~~-~G~lYw~~~~~~~~~~~~~i~~fD~~~~~~~~-i~lP~~~~~~~~~~~l~~~-~g~L~l~~ 264 (366)
.......... ...+. +|.+. .+..+ ..|..+|+.+.+... +..+... ...+... +|+..+..
T Consensus 1039 ~~~~~~~~v~---~~~~~~~~~l~-~~~~d------g~v~vwd~~~~~~~~~~~~~~~~-----v~~~~~s~d~~~l~s~ 1103 (1249)
T 3sfz_A 1039 FLQAHQETVK---DFRLLQDSRLL-SWSFD------GTVKVWNVITGRIERDFTCHQGT-----VLSCAISSDATKFSST 1103 (1249)
T ss_dssp CCBCCSSCEE---EEEECSSSEEE-EEESS------SEEEEEETTTTCCCEEEECCSSC-----CCCEEECSSSSSCEEE
T ss_pred EEecCCCcEE---EEEEcCCCcEE-EEECC------CcEEEEECCCCceeEEEcccCCc-----EEEEEECCCCCEEEEE
Confidence 4332221111 01111 33332 22222 379999998765432 2222211 1122222 45555555
Q ss_pred eecCCCCCCcEEEEEeccCCCCCceEEEEEeccCCCceeeEEEEecCCcEEEEEeeCCeEEEEeCCCCeEE
Q 017748 265 KFDDDDDDRPWDLWVMKEYGVNDSWTKLATLLNVGGGNVKPLVYSRSEDKVLLHAVRGDLCWYDLERHRVR 335 (366)
Q Consensus 265 ~~~~~~~~~~l~iW~l~~~~~~~~W~~~~~i~~~~~~~~~~~~~~~~g~~i~~~~~~~~~~~yd~~t~~~~ 335 (366)
..+. .+.+|-++.... +..+.... +...-+++..+|..++....++.+..||+.+++..
T Consensus 1104 s~d~-----~v~iwd~~~~~~------~~~l~~h~-~~v~~~~~s~dg~~lat~~~dg~i~vwd~~~~~~~ 1162 (1249)
T 3sfz_A 1104 SADK-----TAKIWSFDLLSP------LHELKGHN-GCVRCSAFSLDGILLATGDDNGEIRIWNVSDGQLL 1162 (1249)
T ss_dssp CCSS-----CCCEECSSSSSC------SBCCCCCS-SCEEEEEECSSSSEEEEEETTSCCCEEESSSSCCC
T ss_pred cCCC-----cEEEEECCCcce------eeeeccCC-CcEEEEEECCCCCEEEEEeCCCEEEEEECCCCceE
Confidence 5444 789998875321 11121100 11445667778866666677777999999987754
|
| >1got_B GT-beta; complex (GTP-binding/transducer), G protein, heterotrimer signal transduction; HET: GDP; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1b9y_A 1b9x_A* 2trc_B 1tbg_A 1gg2_B* 1omw_B 1gp2_B 1xhm_A 2qns_A 3ah8_B* 3cik_B 3kj5_A 3krw_B* 3krx_B* 3psc_B 3pvu_B* 3pvw_B* 1a0r_B* 2bcj_B* 3sn6_B* | Back alignment and structure |
|---|
Probab=83.76 E-value=20 Score=30.82 Aligned_cols=96 Identities=10% Similarity=0.074 Sum_probs=56.8
Q ss_pred EEEEEECCCceeeee-CCCCccCCCCceEEEEEE-CCeEEEEEeecCCCCCCcEEEEEeccCCCCCceEEEEEeccCCCc
Q 017748 224 IIIAFDLKSEEFYQV-PLPPIVGIEGYYILLEAL-GGCLCLLCKFDDDDDDRPWDLWVMKEYGVNDSWTKLATLLNVGGG 301 (366)
Q Consensus 224 ~i~~fD~~~~~~~~i-~lP~~~~~~~~~~~l~~~-~g~L~l~~~~~~~~~~~~l~iW~l~~~~~~~~W~~~~~i~~~~~~ 301 (366)
.|..+|+++.+.... ..... ....+... +|++.+.+..+. .+.+|-+... ..+..+.... .
T Consensus 165 ~i~~wd~~~~~~~~~~~~h~~-----~v~~~~~~~~~~~l~sg~~d~-----~v~~wd~~~~------~~~~~~~~h~-~ 227 (340)
T 1got_B 165 TCALWDIETGQQTTTFTGHTG-----DVMSLSLAPDTRLFVSGACDA-----SAKLWDVREG------MCRQTFTGHE-S 227 (340)
T ss_dssp CEEEEETTTTEEEEEECCCSS-----CEEEEEECTTSSEEEEEETTS-----CEEEEETTTC------SEEEEECCCS-S
T ss_pred cEEEEECCCCcEEEEEcCCCC-----ceEEEEECCCCCEEEEEeCCC-----cEEEEECCCC------eeEEEEcCCc-C
Confidence 688999988765332 22211 22233333 466666665554 8999987652 1223332111 1
Q ss_pred eeeEEEEecCCcEEEEEeeCCeEEEEeCCCCeEEE
Q 017748 302 NVKPLVYSRSEDKVLLHAVRGDLCWYDLERHRVRS 336 (366)
Q Consensus 302 ~~~~~~~~~~g~~i~~~~~~~~~~~yd~~t~~~~~ 336 (366)
...-+++.++++.++....++.+..||+++++...
T Consensus 228 ~v~~v~~~p~~~~l~s~s~d~~v~iwd~~~~~~~~ 262 (340)
T 1got_B 228 DINAICFFPNGNAFATGSDDATCRLFDLRADQELM 262 (340)
T ss_dssp CEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEE
T ss_pred CEEEEEEcCCCCEEEEEcCCCcEEEEECCCCcEEE
Confidence 14456677788666666777789999999887543
|
| >1sq9_A Antiviral protein SKI8; WD repeat, beta-transducin repeat, WD40 repeat, beta propeller, recombination; 1.90A {Saccharomyces cerevisiae} SCOP: b.69.4.1 PDB: 1s4u_X | Back alignment and structure |
|---|
Probab=83.74 E-value=22 Score=31.08 Aligned_cols=56 Identities=9% Similarity=0.105 Sum_probs=35.8
Q ss_pred cEEEEEeccCCCCCceEEEEEecc-------CCCceeeEEEEecCCcEEEEEeeC---CeEEEEeCCCCeEEEe
Q 017748 274 PWDLWVMKEYGVNDSWTKLATLLN-------VGGGNVKPLVYSRSEDKVLLHAVR---GDLCWYDLERHRVRSI 337 (366)
Q Consensus 274 ~l~iW~l~~~~~~~~W~~~~~i~~-------~~~~~~~~~~~~~~g~~i~~~~~~---~~~~~yd~~t~~~~~v 337 (366)
.+.+|-+... ..+..+.. ... ..-+++..++..++....+ +.+..||+++++....
T Consensus 208 ~i~i~d~~~~------~~~~~~~~~~~h~~~~~~--i~~i~~~~~~~~l~~~~~d~~~g~i~i~d~~~~~~~~~ 273 (397)
T 1sq9_A 208 TVQISELSTL------RPLYNFESQHSMINNSNS--IRSVKFSPQGSLLAIAHDSNSFGCITLYETEFGERIGS 273 (397)
T ss_dssp EEEEEETTTT------EEEEEEECCC---CCCCC--EEEEEECSSTTEEEEEEEETTEEEEEEEETTTCCEEEE
T ss_pred cEEEEECCCC------ceeEEEeccccccccCCc--cceEEECCCCCEEEEEecCCCCceEEEEECCCCcccce
Confidence 8999988752 22333332 211 4455666777666666666 6799999998875444
|
| >1jmx_B Amine dehydrogenase; oxidoreductase; HET: TRQ HEC; 1.90A {Pseudomonas putida} SCOP: b.69.2.2 PDB: 1jmz_B* | Back alignment and structure |
|---|
Probab=83.70 E-value=6.1 Score=33.94 Aligned_cols=107 Identities=7% Similarity=-0.084 Sum_probs=56.8
Q ss_pred CCcEEEEEeeCCCCCCCcEEEEEECCCceee-eeCCCCccCCCCceEEEEEE-CCe-EEEEEeecCCCCCCcEEEEEecc
Q 017748 206 NGALHWTAALNQDADRNDIIIAFDLKSEEFY-QVPLPPIVGIEGYYILLEAL-GGC-LCLLCKFDDDDDDRPWDLWVMKE 282 (366)
Q Consensus 206 ~G~lYw~~~~~~~~~~~~~i~~fD~~~~~~~-~i~lP~~~~~~~~~~~l~~~-~g~-L~l~~~~~~~~~~~~l~iW~l~~ 282 (366)
++.+|...... ..|..+|+.+.+.. .+.++... ....+... +|+ +++...... .+.+|-++.
T Consensus 10 ~~~~~v~~~~~------~~v~~~d~~~~~~~~~~~~~~~~----~~~~~~~s~dg~~~~v~~~~~~-----~i~~~d~~t 74 (349)
T 1jmx_B 10 GHEYMIVTNYP------NNLHVVDVASDTVYKSCVMPDKF----GPGTAMMAPDNRTAYVLNNHYG-----DIYGIDLDT 74 (349)
T ss_dssp TCEEEEEEETT------TEEEEEETTTTEEEEEEECSSCC----SSCEEEECTTSSEEEEEETTTT-----EEEEEETTT
T ss_pred CCEEEEEeCCC------CeEEEEECCCCcEEEEEecCCCC----CCceeEECCCCCEEEEEeCCCC-----cEEEEeCCC
Confidence 45555544433 37999999987663 44665411 01122333 455 454443222 677776554
Q ss_pred CCCCCceEEEEEeccCCC-----ceeeEEEEecCCcEEEEEeeC------------CeEEEEeCCCCe
Q 017748 283 YGVNDSWTKLATLLNVGG-----GNVKPLVYSRSEDKVLLHAVR------------GDLCWYDLERHR 333 (366)
Q Consensus 283 ~~~~~~W~~~~~i~~~~~-----~~~~~~~~~~~g~~i~~~~~~------------~~~~~yd~~t~~ 333 (366)
. ..+..+..... ....-+.+.++|+.+++...+ ..+..||+++++
T Consensus 75 ----~--~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~ 136 (349)
T 1jmx_B 75 ----C--KNTFHANLSSVPGEVGRSMYSFAISPDGKEVYATVNPTQRLNDHYVVKPPRLEVFSTADGL 136 (349)
T ss_dssp ----T--EEEEEEESCCSTTEEEECSSCEEECTTSSEEEEEEEEEEECSSCEEECCCEEEEEEGGGGG
T ss_pred ----C--cEEEEEEcccccccccccccceEECCCCCEEEEEcccccccccccccCCCeEEEEECCCcc
Confidence 1 12223332110 002335677788677776643 679999998854
|
| >1pby_B Quinohemoprotein amine dehydrogenase 40 kDa subunit; oxidoreductase; HET: TRW HEM; 1.70A {Paracoccus denitrificans} SCOP: b.69.2.2 PDB: 1jju_B* | Back alignment and structure |
|---|
Probab=83.67 E-value=16 Score=30.84 Aligned_cols=100 Identities=14% Similarity=0.142 Sum_probs=57.8
Q ss_pred EEEEEECCCceeeeeCCCCccCCCCceEEEEEE-CCeEEEEEeecCCCCCCcEEEEEeccCCCCCceEEEEEeccCCCce
Q 017748 224 IIIAFDLKSEEFYQVPLPPIVGIEGYYILLEAL-GGCLCLLCKFDDDDDDRPWDLWVMKEYGVNDSWTKLATLLNVGGGN 302 (366)
Q Consensus 224 ~i~~fD~~~~~~~~i~lP~~~~~~~~~~~l~~~-~g~L~l~~~~~~~~~~~~l~iW~l~~~~~~~~W~~~~~i~~~~~~~ 302 (366)
.|..+|+++.+...+.++... .....+... +|+..++. +. .+.+|-++. ...+..++....
T Consensus 220 ~v~~~d~~~~~~~~~~~~~~~---~~~~~~~~s~dg~~l~~~--~~-----~v~~~d~~~------~~~~~~~~~~~~-- 281 (337)
T 1pby_B 220 GLLTMDLETGEMAMREVRIMD---VFYFSTAVNPAKTRAFGA--YN-----VLESFDLEK------NASIKRVPLPHS-- 281 (337)
T ss_dssp EEEEEETTTCCEEEEEEEECS---SCEEEEEECTTSSEEEEE--ES-----EEEEEETTT------TEEEEEEECSSC--
T ss_pred ceEEEeCCCCCceEeecCCCC---CceeeEEECCCCCEEEEe--CC-----eEEEEECCC------CcCcceecCCCc--
Confidence 588999998876544332221 011123333 35443333 22 788887654 233344443222
Q ss_pred eeEEEEecCCcEEEEEeeCCeEEEEeCCCCeEEEeeeec
Q 017748 303 VKPLVYSRSEDKVLLHAVRGDLCWYDLERHRVRSIVEID 341 (366)
Q Consensus 303 ~~~~~~~~~g~~i~~~~~~~~~~~yd~~t~~~~~v~~~~ 341 (366)
..-+++.++|+.+++...++.+.+||+++++......+.
T Consensus 282 ~~~~~~s~dg~~l~~~~~~~~i~v~d~~~~~~~~~~~~~ 320 (337)
T 1pby_B 282 YYSVNVSTDGSTVWLGGALGDLAAYDAETLEKKGQVDLP 320 (337)
T ss_dssp CCEEEECTTSCEEEEESBSSEEEEEETTTCCEEEEEECG
T ss_pred eeeEEECCCCCEEEEEcCCCcEEEEECcCCcEEEEEEcC
Confidence 334567778867887766778999999998765443554
|
| >3mmy_A MRNA export factor; mRNA export, nuclear protein; HET: MES; 1.65A {Homo sapiens} | Back alignment and structure |
|---|
Probab=83.59 E-value=20 Score=30.64 Aligned_cols=194 Identities=7% Similarity=-0.021 Sum_probs=90.5
Q ss_pred eEEeecCCccEEEEEeccccceeecCCcCCCCCCCCcceEEEeeecCCCCeEEEEEEEEcCCCCccEEEEEEecCCcEE-
Q 017748 109 LLALEDSRRNIMLLLNPLTKRHRVLPTFYRDLSRCVPSLEGFGFDVGSGDFKLVKILAFGKPMNYTEVAVFSLRVNSWR- 187 (366)
Q Consensus 109 ll~~~~~~~~~~~V~NP~t~~~~~LP~~~~~~~~~~~~~~~lg~d~~~~~ykvv~~~~~~~~~~~~~~~vyss~t~~W~- 187 (366)
+++....+..+. |||..+++...+... ......+.+.+..+.-.++.... ...+.+|+.+++.-.
T Consensus 100 ~l~s~~~dg~v~-iwd~~~~~~~~~~~~-------~~~v~~~~~~~~~~~~~l~~~~~------dg~i~vwd~~~~~~~~ 165 (368)
T 3mmy_A 100 KVFTASCDKTAK-MWDLSSNQAIQIAQH-------DAPVKTIHWIKAPNYSCVMTGSW------DKTLKFWDTRSSNPMM 165 (368)
T ss_dssp EEEEEETTSEEE-EEETTTTEEEEEEEC-------SSCEEEEEEEECSSCEEEEEEET------TSEEEEECSSCSSCSE
T ss_pred EEEEEcCCCcEE-EEEcCCCCceeeccc-------cCceEEEEEEeCCCCCEEEEccC------CCcEEEEECCCCcEEE
Confidence 344344455677 889888876664321 11334455533322222333221 446788887665321
Q ss_pred EccCCCcceecCCcceEECCcEEEEEeeCCCCCCCcEEEEEECCCcee--eeeCCCCccCCCCceEEEEEEC---CeEEE
Q 017748 188 RIQDFPYFWVTGTCSVFVNGALHWTAALNQDADRNDIIIAFDLKSEEF--YQVPLPPIVGIEGYYILLEALG---GCLCL 262 (366)
Q Consensus 188 ~~~~~~~~~~~~~~~v~~~G~lYw~~~~~~~~~~~~~i~~fD~~~~~~--~~i~lP~~~~~~~~~~~l~~~~---g~L~l 262 (366)
.+.. +. ....+...+.....+... ..+..+|+.+..- ..+..+... ......+.... ....+
T Consensus 166 ~~~~-~~----~~~~~~~~~~~~~~~~~~------~~i~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~ 232 (368)
T 3mmy_A 166 VLQL-PE----RCYCADVIYPMAVVATAE------RGLIVYQLENQPSEFRRIESPLKH--QHRCVAIFKDKQNKPTGFA 232 (368)
T ss_dssp EEEC-SS----CEEEEEEETTEEEEEEGG------GCEEEEECSSSCEEEEECCCSCSS--CEEEEEEEECTTSCEEEEE
T ss_pred EEec-CC----CceEEEecCCeeEEEeCC------CcEEEEEeccccchhhhccccccC--CCceEEEcccCCCCCCeEE
Confidence 1111 10 011222223333444333 2688888876543 333333222 11111111111 12233
Q ss_pred EEeecCCCCCCcEEEEEeccCCCCCceEEEEEeccCC--------C---ceeeEEEEecCCcEEEEEeeCCeEEEEeCCC
Q 017748 263 LCKFDDDDDDRPWDLWVMKEYGVNDSWTKLATLLNVG--------G---GNVKPLVYSRSEDKVLLHAVRGDLCWYDLER 331 (366)
Q Consensus 263 ~~~~~~~~~~~~l~iW~l~~~~~~~~W~~~~~i~~~~--------~---~~~~~~~~~~~g~~i~~~~~~~~~~~yd~~t 331 (366)
++..+. .+.+|.++.... -..+..+.... . ....-+++.+++..++....++.+..||+++
T Consensus 233 ~~~~dg-----~i~i~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~s~~~dg~i~iwd~~~ 304 (368)
T 3mmy_A 233 LGSIEG-----RVAIHYINPPNP---AKDNFTFKCHRSNGTNTSAPQDIYAVNGIAFHPVHGTLATVGSDGRFSFWDKDA 304 (368)
T ss_dssp EEETTS-----EEEEEESSCSCH---HHHSEEEECSEEC----CCCEEECCEEEEEECTTTCCEEEEETTSCEEEEETTT
T ss_pred EecCCC-----cEEEEecCCCCc---cccceeeeeeecccccccccccccceEEEEEecCCCEEEEEccCCeEEEEECCC
Confidence 333333 899999876421 00111111100 0 0133455667775666666777899999999
Q ss_pred CeEEEe
Q 017748 332 HRVRSI 337 (366)
Q Consensus 332 ~~~~~v 337 (366)
++....
T Consensus 305 ~~~~~~ 310 (368)
T 3mmy_A 305 RTKLKT 310 (368)
T ss_dssp TEEEEE
T ss_pred CcEEEE
Confidence 876544
|
| >1pby_B Quinohemoprotein amine dehydrogenase 40 kDa subunit; oxidoreductase; HET: TRW HEM; 1.70A {Paracoccus denitrificans} SCOP: b.69.2.2 PDB: 1jju_B* | Back alignment and structure |
|---|
Probab=83.07 E-value=18 Score=30.52 Aligned_cols=101 Identities=11% Similarity=0.038 Sum_probs=54.7
Q ss_pred cEEEEEECCCceee-eeCCCC---ccCCCCceEEEEEE-CC-eEEEEEeecCCCCCCcEEEEEeccCCCCCceEEEEEec
Q 017748 223 DIIIAFDLKSEEFY-QVPLPP---IVGIEGYYILLEAL-GG-CLCLLCKFDDDDDDRPWDLWVMKEYGVNDSWTKLATLL 296 (366)
Q Consensus 223 ~~i~~fD~~~~~~~-~i~lP~---~~~~~~~~~~l~~~-~g-~L~l~~~~~~~~~~~~l~iW~l~~~~~~~~W~~~~~i~ 296 (366)
..|..+|+.+.+.. .+.++. .. .. +... +| .|++...... .+.+|-++.. + .+..+.
T Consensus 11 ~~v~~~d~~~~~~~~~~~~~~~~~~~----~~--~~~s~dg~~l~v~~~~~~-----~v~~~d~~~~----~--~~~~~~ 73 (337)
T 1pby_B 11 DKLVVIDTEKMAVDKVITIADAGPTP----MV--PMVAPGGRIAYATVNKSE-----SLVKIDLVTG----E--TLGRID 73 (337)
T ss_dssp TEEEEEETTTTEEEEEEECTTCTTCC----CC--EEECTTSSEEEEEETTTT-----EEEEEETTTC----C--EEEEEE
T ss_pred CeEEEEECCCCcEEEEEEcCCCCCCc----cc--eEEcCCCCEEEEEeCCCC-----eEEEEECCCC----C--eEeeEE
Confidence 37999999887653 345554 22 11 2222 45 4555443222 6777765441 1 222333
Q ss_pred cCCCc----eeeEEEEecCCcEEEEEe------------eCCeEEEEeCCCCeEEEeeee
Q 017748 297 NVGGG----NVKPLVYSRSEDKVLLHA------------VRGDLCWYDLERHRVRSIVEI 340 (366)
Q Consensus 297 ~~~~~----~~~~~~~~~~g~~i~~~~------------~~~~~~~yd~~t~~~~~v~~~ 340 (366)
....+ ...-+++..+|+.+++.. .++.+..||+++++.......
T Consensus 74 ~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~ 133 (337)
T 1pby_B 74 LSTPEERVKSLFGAALSPDGKTLAIYESPVRLELTHFEVQPTRVALYDAETLSRRKAFEA 133 (337)
T ss_dssp CCBTTEEEECTTCEEECTTSSEEEEEEEEEEECSSCEEECCCEEEEEETTTTEEEEEEEC
T ss_pred cCCcccccccccceEECCCCCEEEEEecccccccccccccCceEEEEECCCCcEEEEEeC
Confidence 21100 123356677786777764 346799999999887654343
|
| >3g4e_A Regucalcin; six bladed beta-propeller, gluconolcatonase, organophosphate hydrolase, calcium bound, alternative splicing, cytoplasm, phosphoprotein; 1.42A {Homo sapiens} PDB: 3g4h_B | Back alignment and structure |
|---|
Probab=82.83 E-value=21 Score=30.17 Aligned_cols=101 Identities=15% Similarity=0.067 Sum_probs=55.2
Q ss_pred CCcEEEEEeeCCCCCCCcEEEEEECCCceeeeeCCCCccCCCCceEEEEEE-CCeEEEEEeecCCCCCCcEEEEEeccCC
Q 017748 206 NGALHWTAALNQDADRNDIIIAFDLKSEEFYQVPLPPIVGIEGYYILLEAL-GGCLCLLCKFDDDDDDRPWDLWVMKEYG 284 (366)
Q Consensus 206 ~G~lYw~~~~~~~~~~~~~i~~fD~~~~~~~~i~lP~~~~~~~~~~~l~~~-~g~L~l~~~~~~~~~~~~l~iW~l~~~~ 284 (366)
+|.+||..... ..|..+|+.+.+...+..|... ..++.. +|+|++.. .. .+.+|-.+.
T Consensus 24 ~~~l~~~d~~~------~~i~~~d~~~~~~~~~~~~~~~------~~i~~~~dG~l~v~~--~~-----~l~~~d~~~-- 82 (297)
T 3g4e_A 24 SNSLLFVDIPA------KKVCRWDSFTKQVQRVTMDAPV------SSVALRQSGGYVATI--GT-----KFCALNWKE-- 82 (297)
T ss_dssp TTEEEEEETTT------TEEEEEETTTCCEEEEECSSCE------EEEEEBTTSSEEEEE--TT-----EEEEEETTT--
T ss_pred CCEEEEEECCC------CEEEEEECCCCcEEEEeCCCce------EEEEECCCCCEEEEE--CC-----eEEEEECCC--
Confidence 47899987654 4899999998877666665432 223333 57766543 22 444443332
Q ss_pred CCCceEEEEEeccCCCceeeE--EEEecCCcEEEEEee------------CCeEEEEeCCC
Q 017748 285 VNDSWTKLATLLNVGGGNVKP--LVYSRSEDKVLLHAV------------RGDLCWYDLER 331 (366)
Q Consensus 285 ~~~~W~~~~~i~~~~~~~~~~--~~~~~~g~~i~~~~~------------~~~~~~yd~~t 331 (366)
+++..+....... ...++ +.+..+| .+++... ...++.+|+..
T Consensus 83 --g~~~~~~~~~~~~-~~~~~~di~~d~dG-~l~~~~~~~~~~~~~~~~~~~~l~~~d~~g 139 (297)
T 3g4e_A 83 --QSAVVLATVDNDK-KNNRFNDGKVDPAG-RYFAGTMAEETAPAVLERHQGALYSLFPDH 139 (297)
T ss_dssp --TEEEEEEECCTTC-SSEEEEEEEECTTS-CEEEEEEECCSBTTBCCTTCEEEEEECTTS
T ss_pred --CcEEEEEecCCCC-CCCCCCCEEECCCC-CEEEecCCcccccccccCCCcEEEEEECCC
Confidence 3355444432211 11333 4445566 6666542 12478888763
|
| >3no2_A Uncharacterized protein; six-bladed beta-propeller, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE CIT PEG; 1.35A {Bacteroides caccae} | Back alignment and structure |
|---|
Probab=82.68 E-value=21 Score=30.06 Aligned_cols=194 Identities=11% Similarity=0.018 Sum_probs=88.7
Q ss_pred eeEEeecCCccEEEEEeccccceee-cCCcCCCCCCCCcceEEEeeecCCCCeEEEEEEEEcCCCCccEEEEEEe-cCCc
Q 017748 108 GLLALEDSRRNIMLLLNPLTKRHRV-LPTFYRDLSRCVPSLEGFGFDVGSGDFKLVKILAFGKPMNYTEVAVFSL-RVNS 185 (366)
Q Consensus 108 Gll~~~~~~~~~~~V~NP~t~~~~~-LP~~~~~~~~~~~~~~~lg~d~~~~~ykvv~~~~~~~~~~~~~~~vyss-~t~~ 185 (366)
.++........++ ++|+.|++..+ ++...... .....+.|. +. ++. .. ...+..|+. +.-.
T Consensus 6 ~~lv~~~~~~~v~-~~d~~tG~~~w~~~~~~~~~------~~~~~~~pd-G~--ilv-s~------~~~V~~~d~~G~~~ 68 (276)
T 3no2_A 6 HLLVGGSGWNKIA-IINKDTKEIVWEYPLEKGWE------CNSVAATKA-GE--ILF-SY------SKGAKMITRDGREL 68 (276)
T ss_dssp EEEEECTTCSEEE-EEETTTTEEEEEEECCTTCC------CCEEEECTT-SC--EEE-EC------BSEEEEECTTSCEE
T ss_pred cEEEeeCCCCEEE-EEECCCCeEEEEeCCCccCC------CcCeEECCC-CC--EEE-eC------CCCEEEECCCCCEE
Confidence 3444444566778 99998888543 33321001 112233332 22 222 11 335777777 2235
Q ss_pred EEEccCCCcceecCCcceEECCcEEEEEeeCCCCCCCcEEEEEECCCceeeeeCCCCccC-CCCceEEEE-EECCeEEEE
Q 017748 186 WRRIQDFPYFWVTGTCSVFVNGALHWTAALNQDADRNDIIIAFDLKSEEFYQVPLPPIVG-IEGYYILLE-ALGGCLCLL 263 (366)
Q Consensus 186 W~~~~~~~~~~~~~~~~v~~~G~lYw~~~~~~~~~~~~~i~~fD~~~~~~~~i~lP~~~~-~~~~~~~l~-~~~g~L~l~ 263 (366)
|+.-..-... .......-+|.++....... ..+++||...+....+.+..... .......+. ..+|.++++
T Consensus 69 W~~~~~~~~~--~~~~~~~~dG~~lv~~~~~~-----~~v~~vd~~Gk~l~~~~~~~~~~~~~~~~~~v~~~~~G~~lv~ 141 (276)
T 3no2_A 69 WNIAAPAGCE--MQTARILPDGNALVAWCGHP-----STILEVNMKGEVLSKTEFETGIERPHAQFRQINKNKKGNYLVP 141 (276)
T ss_dssp EEEECCTTCE--EEEEEECTTSCEEEEEESTT-----EEEEEECTTSCEEEEEEECCSCSSGGGSCSCCEECTTSCEEEE
T ss_pred EEEcCCCCcc--ccccEECCCCCEEEEecCCC-----CEEEEEeCCCCEEEEEeccCCCCcccccccCceECCCCCEEEE
Confidence 7653311111 11113345677766654411 47899998655433333322210 000000111 225665554
Q ss_pred EeecCCCCCCcEEEEEeccCCCCCceEEEEEeccCCCceeeEEEEecCCcEEEEEeeCCeEEEEeCCCCeEEEeee
Q 017748 264 CKFDDDDDDRPWDLWVMKEYGVNDSWTKLATLLNVGGGNVKPLVYSRSEDKVLLHAVRGDLCWYDLERHRVRSIVE 339 (366)
Q Consensus 264 ~~~~~~~~~~~l~iW~l~~~~~~~~W~~~~~i~~~~~~~~~~~~~~~~g~~i~~~~~~~~~~~yd~~t~~~~~v~~ 339 (366)
...+. .+..|-.+ + +..|.... +... .. .....+|+.++....+.+++.+|++|++..+-+.
T Consensus 142 ~~~~~-----~v~~~d~~--G-~~~w~~~~--~~~~---~~-~~~~~~g~~~v~~~~~~~v~~~d~~tG~~~w~~~ 203 (276)
T 3no2_A 142 LFATS-----EVREIAPN--G-QLLNSVKL--SGTP---FS-SAFLDNGDCLVACGDAHCFVQLNLESNRIVRRVN 203 (276)
T ss_dssp ETTTT-----EEEEECTT--S-CEEEEEEC--SSCC---CE-EEECTTSCEEEECBTTSEEEEECTTTCCEEEEEE
T ss_pred ecCCC-----EEEEECCC--C-CEEEEEEC--CCCc---cc-eeEcCCCCEEEEeCCCCeEEEEeCcCCcEEEEec
Confidence 43222 44443332 2 34455422 2111 11 2334556344444445579999999888766644
|
| >3c75_H MADH, methylamine dehydrogenase heavy chain; copper proteins, electron transfer complex, TTQ, electron transport, oxidoreductase, periplasm, transport, metal- binding; HET: TRQ; 2.50A {Paracoccus versutus} | Back alignment and structure |
|---|
Probab=82.68 E-value=13 Score=33.81 Aligned_cols=75 Identities=11% Similarity=0.064 Sum_probs=47.6
Q ss_pred CCeEEEEEeecCCCC--CCcEEEEEeccCCCCCceEEEEEeccCCCceeeEEEEecCCc-EEEEEe-eCCeEEEEeCCCC
Q 017748 257 GGCLCLLCKFDDDDD--DRPWDLWVMKEYGVNDSWTKLATLLNVGGGNVKPLVYSRSED-KVLLHA-VRGDLCWYDLERH 332 (366)
Q Consensus 257 ~g~L~l~~~~~~~~~--~~~l~iW~l~~~~~~~~W~~~~~i~~~~~~~~~~~~~~~~g~-~i~~~~-~~~~~~~yd~~t~ 332 (366)
+++||+.......+. ...=.||++|- .++..+.+|+.... ..-+.+..+|+ .+|... .++.|.++|++|+
T Consensus 330 g~rlyVa~~~~~~gthk~~s~~VsVID~----~T~kvv~~I~vg~~--P~gia~spDg~~~lyv~n~~s~~VsVID~~t~ 403 (426)
T 3c75_H 330 SDRIYLLVDQRDEWKHKAASRFVVVLNA----ETGERINKIELGHE--IDSINVSQDAEPLLYALSAGTQTLHIYDAATG 403 (426)
T ss_dssp GTEEEEEEEECCTTCTTSCEEEEEEEET----TTCCEEEEEEEEEE--ECEEEECCSSSCEEEEEETTTTEEEEEETTTC
T ss_pred CCEEEEEecccccccccCCCCEEEEEEC----CCCeEEEEEECCCC--cCeEEEccCCCEEEEEEcCCCCeEEEEECCCC
Confidence 478888765321100 01346888886 45777888875322 33456677886 555555 3567999999999
Q ss_pred eEEEe
Q 017748 333 RVRSI 337 (366)
Q Consensus 333 ~~~~v 337 (366)
+..+-
T Consensus 404 kvv~t 408 (426)
T 3c75_H 404 EELRS 408 (426)
T ss_dssp CEEEE
T ss_pred CEEEE
Confidence 97644
|
| >2ynn_A Coatomer subunit beta'; protein transport, peptide binding protein, membrane traffic COPI-mediated trafficking, dilysine motifs; 1.78A {Saccharomyces cerevisiae} PDB: 2yno_A | Back alignment and structure |
|---|
Probab=82.58 E-value=21 Score=30.13 Aligned_cols=190 Identities=11% Similarity=0.057 Sum_probs=93.6
Q ss_pred eeEEeecCCccEEEEEeccccceee-cCCcCCCCCCCCcceEEEeeecCCCCeEEEEEEEEcCCCCccEEEEEEecCCcE
Q 017748 108 GLLALEDSRRNIMLLLNPLTKRHRV-LPTFYRDLSRCVPSLEGFGFDVGSGDFKLVKILAFGKPMNYTEVAVFSLRVNSW 186 (366)
Q Consensus 108 Gll~~~~~~~~~~~V~NP~t~~~~~-LP~~~~~~~~~~~~~~~lg~d~~~~~ykvv~~~~~~~~~~~~~~~vyss~t~~W 186 (366)
.+++....+..+. |||..+++... +.. + ......+.+.|.. .+ ++... ....+.+++.+++.=
T Consensus 68 ~~l~s~s~d~~i~-vwd~~~~~~~~~~~~----h---~~~v~~~~~~~~~-~~-l~sgs------~D~~v~lWd~~~~~~ 131 (304)
T 2ynn_A 68 NWIIVGSDDFRIR-VFNYNTGEKVVDFEA----H---PDYIRSIAVHPTK-PY-VLSGS------DDLTVKLWNWENNWA 131 (304)
T ss_dssp TEEEEEETTSEEE-EEETTTCCEEEEEEC----C---SSCEEEEEECSSS-SE-EEEEE------TTSCEEEEEGGGTTE
T ss_pred CEEEEECCCCEEE-EEECCCCcEEEEEeC----C---CCcEEEEEEcCCC-CE-EEEEC------CCCeEEEEECCCCcc
Confidence 3444444566778 99998877543 211 1 1234456666643 22 22221 144677888765411
Q ss_pred --EEccCCCcceecCCcceEE---CCcEEEEEeeCCCCCCCcEEEEEECCCceeeee-CCCCccCCCCceEEEEEE---C
Q 017748 187 --RRIQDFPYFWVTGTCSVFV---NGALHWTAALNQDADRNDIIIAFDLKSEEFYQV-PLPPIVGIEGYYILLEAL---G 257 (366)
Q Consensus 187 --~~~~~~~~~~~~~~~~v~~---~G~lYw~~~~~~~~~~~~~i~~fD~~~~~~~~i-~lP~~~~~~~~~~~l~~~---~ 257 (366)
..+..-. ..-.++.+ +|.+...+..+ ..|..+|+.+..-... ...... ....+... +
T Consensus 132 ~~~~~~~h~----~~v~~v~~~p~~~~~l~sgs~D------~~v~iwd~~~~~~~~~~~~~~~~----~v~~~~~~~~~~ 197 (304)
T 2ynn_A 132 LEQTFEGHE----HFVMCVAFNPKDPSTFASGCLD------RTVKVWSLGQSTPNFTLTTGQER----GVNYVDYYPLPD 197 (304)
T ss_dssp EEEEECCCC----SCEEEEEECTTCTTEEEEEETT------SEEEEEETTCSSCSEEEECCCTT----CEEEEEECCSTT
T ss_pred hhhhhcccC----CcEEEEEECCCCCCEEEEEeCC------CeEEEEECCCCCccceeccCCcC----cEEEEEEEEcCC
Confidence 1111100 00112222 23333333332 3788999876433211 111111 11122221 3
Q ss_pred CeEEEEEeecCCCCCCcEEEEEeccCCCCCceEEEEEeccCCCceeeEEEEecCCcEEEEEeeCCeEEEEeCCCCeEEEe
Q 017748 258 GCLCLLCKFDDDDDDRPWDLWVMKEYGVNDSWTKLATLLNVGGGNVKPLVYSRSEDKVLLHAVRGDLCWYDLERHRVRSI 337 (366)
Q Consensus 258 g~L~l~~~~~~~~~~~~l~iW~l~~~~~~~~W~~~~~i~~~~~~~~~~~~~~~~g~~i~~~~~~~~~~~yd~~t~~~~~v 337 (366)
+.+.+.+..+. .+.+|-++.. ..+.++.... ....-+++.+++..|+-...++.+..||+++++..+.
T Consensus 198 ~~~l~s~s~D~-----~i~iWd~~~~------~~~~~~~~h~-~~v~~~~~~p~~~~l~s~s~Dg~i~iWd~~~~~~~~~ 265 (304)
T 2ynn_A 198 KPYMITASDDL-----TIKIWDYQTK------SCVATLEGHM-SNVSFAVFHPTLPIIISGSEDGTLKIWNSSTYKVEKT 265 (304)
T ss_dssp CCEEEEEETTS-----EEEEEETTTT------EEEEEEECCS-SCEEEEEECSSSSEEEEEETTSCEEEEETTTCCEEEE
T ss_pred CCEEEEEcCCC-----eEEEEeCCCC------ccceeeCCCC-CCEEEEEECCCCCEEEEEcCCCeEEEEECCCCceeee
Confidence 44544444444 8999987652 2334443211 1144566777775555566677899999999987765
Q ss_pred ee
Q 017748 338 VE 339 (366)
Q Consensus 338 ~~ 339 (366)
+.
T Consensus 266 ~~ 267 (304)
T 2ynn_A 266 LN 267 (304)
T ss_dssp EC
T ss_pred cc
Confidence 33
|
| >1flg_A Protein (quinoprotein ethanol dehydrogenase); superbarrel, oxidoreductase; HET: PQQ; 2.60A {Pseudomonas aeruginosa} SCOP: b.70.1.1 | Back alignment and structure |
|---|
Probab=82.47 E-value=20 Score=34.08 Aligned_cols=123 Identities=13% Similarity=0.065 Sum_probs=63.2
Q ss_pred CcceEECCcEEEEEeeCCCCCCCcEEEEEECCCc--eeeee-CCCCccC--CCCceEEEEEECCeEEEEEeecCCCCCCc
Q 017748 200 TCSVFVNGALHWTAALNQDADRNDIIIAFDLKSE--EFYQV-PLPPIVG--IEGYYILLEALGGCLCLLCKFDDDDDDRP 274 (366)
Q Consensus 200 ~~~v~~~G~lYw~~~~~~~~~~~~~i~~fD~~~~--~~~~i-~lP~~~~--~~~~~~~l~~~~g~L~l~~~~~~~~~~~~ 274 (366)
..++..+|++|..+... .+.++|.++. .|+.- ..|.... .......++..+|+|++....
T Consensus 62 ~~P~v~~g~vyv~~~~~-------~v~AlD~~tG~~~W~~~~~~~~~~~~~~~~~~~g~a~~~~~v~~~t~d-------- 126 (582)
T 1flg_A 62 SQAIVSDGVIYVTASYS-------RLFALDAKTGKRLWTYNHRLPDDIRPCCDVVNRGAAIYGDKVFFGTLD-------- 126 (582)
T ss_dssp CCCEEETTEEEEEETTT-------EEEEEESSSCCEEEEEECCCCTTCCCSSCSCCCCCEEETTEEEEEETT--------
T ss_pred eccEEECCEEEEEcCCC-------CEEEEECCCCcEEEEEcCCCCcccccccccCCCccEEECCEEEEEeCC--------
Confidence 44788999999877543 5999999764 56543 2222110 000011234467777665421
Q ss_pred EEEEEeccCCCCCceEEEEEeccCCCc-eeeEEEEec--CCc-EEEEEee------CCeEEEEeCCCCeEEEe
Q 017748 275 WDLWVMKEYGVNDSWTKLATLLNVGGG-NVKPLVYSR--SED-KVLLHAV------RGDLCWYDLERHRVRSI 337 (366)
Q Consensus 275 l~iW~l~~~~~~~~W~~~~~i~~~~~~-~~~~~~~~~--~g~-~i~~~~~------~~~~~~yd~~t~~~~~v 337 (366)
-.|..|+-...+..|.....-...... ...|..... +|. .|++... ++.+++||.+|++..+.
T Consensus 127 g~l~AlD~~TG~~~W~~~~~~~~~~~~~~~sP~v~~~~~~G~~~v~vg~~~~e~~~~g~v~alD~~tG~~~W~ 199 (582)
T 1flg_A 127 ASVVALNKNTGKVVWKKKFADHGAGYTMTGAPTIVKDGKTGKVLLIHGSSGDEFGVVGRLFARDPDTGEEIWM 199 (582)
T ss_dssp TEEEEEESSSCCEEEEEECSCGGGTCBCCSCCEEEECTTTCCEEEEECCBCGGGCCBCEEEEECTTTCCEEEE
T ss_pred CEEEEEECCCCCEEeeecCCCCCcCcccccCCEEeCCCcCCcEEEEEeccccccCCCCEEEEEECCCCCEEee
Confidence 124445543234456653211100000 134444432 222 3444332 45799999999997765
|
| >2vdu_B TRNA (guanine-N(7)-)-methyltransferase- associated WD repeat protein TRM82; S-adenosyl-L-methionine, tRNA processing, phosphorylation, M7G, spout MT, WD repeat; 2.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=82.28 E-value=28 Score=31.33 Aligned_cols=102 Identities=8% Similarity=-0.057 Sum_probs=56.2
Q ss_pred EEEEEECCCceeee--eCCCCccCCCCceEEEEEE-C---CeEEEEEeecCCCCCCcEEEEEeccCCCCCceEEEEEecc
Q 017748 224 IIIAFDLKSEEFYQ--VPLPPIVGIEGYYILLEAL-G---GCLCLLCKFDDDDDDRPWDLWVMKEYGVNDSWTKLATLLN 297 (366)
Q Consensus 224 ~i~~fD~~~~~~~~--i~lP~~~~~~~~~~~l~~~-~---g~L~l~~~~~~~~~~~~l~iW~l~~~~~~~~W~~~~~i~~ 297 (366)
.+..+|+.+..... +..... +......+... + |++.+.+..+. .+.+|-+.... - +..+..
T Consensus 172 ~v~~~~~~~~~~~~~~~~~~~~--h~~~v~~~~~sp~~~~~~~l~s~~~d~-----~i~vwd~~~~~----~--~~~~~~ 238 (450)
T 2vdu_B 172 DVYSIDINSIPEEKFTQEPILG--HVSMLTDVHLIKDSDGHQFIITSDRDE-----HIKISHYPQCF----I--VDKWLF 238 (450)
T ss_dssp EEEEEETTSCCCSSCCCCCSEE--CSSCEEEEEEEECTTSCEEEEEEETTS-----CEEEEEESCTT----C--EEEECC
T ss_pred cEEEEecCCcccccccceeeec--ccCceEEEEEcCCCCCCcEEEEEcCCC-----cEEEEECCCCc----e--eeeeec
Confidence 68888887655432 111111 11122233333 4 55666555444 89999987531 1 122111
Q ss_pred CCCceeeEEEEecCCcEEEEEeeCCeEEEEeCCCCeEEEeee
Q 017748 298 VGGGNVKPLVYSRSEDKVLLHAVRGDLCWYDLERHRVRSIVE 339 (366)
Q Consensus 298 ~~~~~~~~~~~~~~g~~i~~~~~~~~~~~yd~~t~~~~~v~~ 339 (366)
.......-+++. +++.++....++.+..||+++++....+.
T Consensus 239 ~h~~~v~~~~~s-d~~~l~s~~~d~~v~vwd~~~~~~~~~~~ 279 (450)
T 2vdu_B 239 GHKHFVSSICCG-KDYLLLSAGGDDKIFAWDWKTGKNLSTFD 279 (450)
T ss_dssp CCSSCEEEEEEC-STTEEEEEESSSEEEEEETTTCCEEEEEE
T ss_pred CCCCceEEEEEC-CCCEEEEEeCCCeEEEEECCCCcEeeeec
Confidence 111124455666 77677777778889999999998654434
|
| >3vgz_A Uncharacterized protein YNCE; beta-propeller, protein binding; 1.70A {Escherichia coli} PDB: 3vh0_A* | Back alignment and structure |
|---|
Probab=81.92 E-value=23 Score=30.18 Aligned_cols=189 Identities=8% Similarity=-0.001 Sum_probs=91.6
Q ss_pred CccEEEEEeccccceee-cCCcCCCCCCCCcceEEEeeecCCCCeEEEEEEEEcCCCCccEEEEEEecCCcEE-EccCC-
Q 017748 116 RRNIMLLLNPLTKRHRV-LPTFYRDLSRCVPSLEGFGFDVGSGDFKLVKILAFGKPMNYTEVAVFSLRVNSWR-RIQDF- 192 (366)
Q Consensus 116 ~~~~~~V~NP~t~~~~~-LP~~~~~~~~~~~~~~~lg~d~~~~~ykvv~~~~~~~~~~~~~~~vyss~t~~W~-~~~~~- 192 (366)
...+. ++|+.|++... ++... . ..++.+++.. .+-++... ....+.+|+..++.-. .+...
T Consensus 68 ~~~v~-~~d~~~~~~~~~~~~~~-~-------~~~~~~s~dg-~~l~v~~~------~~~~v~~~d~~~~~~~~~~~~~~ 131 (353)
T 3vgz_A 68 GGVVY-RLDPVTLEVTQAIHNDL-K-------PFGATINNTT-QTLWFGNT------VNSAVTAIDAKTGEVKGRLVLDD 131 (353)
T ss_dssp SEEEE-EECTTTCCEEEEEEESS-C-------CCSEEEETTT-TEEEEEET------TTTEEEEEETTTCCEEEEEESCC
T ss_pred CccEE-EEcCCCCeEEEEEecCC-C-------cceEEECCCC-CEEEEEec------CCCEEEEEeCCCCeeEEEEecCC
Confidence 34678 99999887543 33211 1 1134555543 33222211 1347888998876532 22110
Q ss_pred Ccc---ee-cCCcceEE--CCcEEEEEeeCCCCCCCcEEEEEECCCceeee-eCCCCccCCCCceEEEEEECCe-EEEEE
Q 017748 193 PYF---WV-TGTCSVFV--NGALHWTAALNQDADRNDIIIAFDLKSEEFYQ-VPLPPIVGIEGYYILLEALGGC-LCLLC 264 (366)
Q Consensus 193 ~~~---~~-~~~~~v~~--~G~lYw~~~~~~~~~~~~~i~~fD~~~~~~~~-i~lP~~~~~~~~~~~l~~~~g~-L~l~~ 264 (366)
... .. ....++.+ +|...+++..... ..|..+|+++.+... ++.+... .....+. -+|+ |++..
T Consensus 132 ~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~----~~i~~~d~~~~~~~~~~~~~~~~---~~~~~~s-~dg~~l~~~~ 203 (353)
T 3vgz_A 132 RKRTEEVRPLQPRELVADDATNTVYISGIGKE----SVIWVVDGGNIKLKTAIQNTGKM---STGLALD-SEGKRLYTTN 203 (353)
T ss_dssp CCCCSSCCCCEEEEEEEETTTTEEEEEEESSS----CEEEEEETTTTEEEEEECCCCTT---CCCCEEE-TTTTEEEEEC
T ss_pred CccccccCCCCCceEEECCCCCEEEEEecCCC----ceEEEEcCCCCceEEEecCCCCc---cceEEEC-CCCCEEEEEc
Confidence 000 00 00112333 5664444442211 379999999876543 3422211 0111111 2444 44433
Q ss_pred eecCCCCCCcEEEEEeccCCCCCceEEEEEeccC---CCceeeEEEEecCCcEEEEEeeC-CeEEEEeCCCCeEEEeeee
Q 017748 265 KFDDDDDDRPWDLWVMKEYGVNDSWTKLATLLNV---GGGNVKPLVYSRSEDKVLLHAVR-GDLCWYDLERHRVRSIVEI 340 (366)
Q Consensus 265 ~~~~~~~~~~l~iW~l~~~~~~~~W~~~~~i~~~---~~~~~~~~~~~~~g~~i~~~~~~-~~~~~yd~~t~~~~~v~~~ 340 (366)
. +. .+.+|-++. ...+..+... ......-+++..+|+.+++...+ +.+..||+++++.......
T Consensus 204 ~-~~-----~i~~~d~~~------~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~~ 271 (353)
T 3vgz_A 204 A-DG-----ELITIDTAD------NKILSRKKLLDDGKEHFFINISLDTARQRAFITDSKAAEVLVVDTRNGNILAKVAA 271 (353)
T ss_dssp T-TS-----EEEEEETTT------TEEEEEEECCCSSSCCCEEEEEEETTTTEEEEEESSSSEEEEEETTTCCEEEEEEC
T ss_pred C-CC-----eEEEEECCC------CeEEEEEEcCCCCCCcccceEEECCCCCEEEEEeCCCCEEEEEECCCCcEEEEEEc
Confidence 2 22 566665443 2233333321 11113336677888777776644 6799999999887654344
|
| >3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A | Back alignment and structure |
|---|
Probab=81.86 E-value=40 Score=32.88 Aligned_cols=179 Identities=8% Similarity=0.058 Sum_probs=88.6
Q ss_pred CccEEEEEeccccceee-cCCcCCCCCCCCcceEEEeeecCCCCeEEEEEEEEcCCCCccEEEEEEecCCcEEE-ccCCC
Q 017748 116 RRNIMLLLNPLTKRHRV-LPTFYRDLSRCVPSLEGFGFDVGSGDFKLVKILAFGKPMNYTEVAVFSLRVNSWRR-IQDFP 193 (366)
Q Consensus 116 ~~~~~~V~NP~t~~~~~-LP~~~~~~~~~~~~~~~lg~d~~~~~ykvv~~~~~~~~~~~~~~~vyss~t~~W~~-~~~~~ 193 (366)
...+. |||..+++... +... .....++.+.|.. .+ ++... ....+.+|+..++.... +....
T Consensus 34 ~g~v~-iwd~~~~~~~~~~~~~-------~~~v~~~~~s~~~-~~-l~~~~------~dg~i~vw~~~~~~~~~~~~~~~ 97 (814)
T 3mkq_A 34 SGRVE-IWNYETQVEVRSIQVT-------ETPVRAGKFIARK-NW-IIVGS------DDFRIRVFNYNTGEKVVDFEAHP 97 (814)
T ss_dssp TSEEE-EEETTTTEEEEEEECC-------SSCEEEEEEEGGG-TE-EEEEE------TTSEEEEEETTTCCEEEEEECCS
T ss_pred CCEEE-EEECCCCceEEEEecC-------CCcEEEEEEeCCC-CE-EEEEe------CCCeEEEEECCCCcEEEEEecCC
Confidence 44566 88877765433 2211 1234456666642 23 22222 14578899988776532 21111
Q ss_pred cceecCCcceE--ECCcEEEEEeeCCCCCCCcEEEEEECCCc-eeeee-CCCCccCCCCceEEEEEE--CCeEEEEEeec
Q 017748 194 YFWVTGTCSVF--VNGALHWTAALNQDADRNDIIIAFDLKSE-EFYQV-PLPPIVGIEGYYILLEAL--GGCLCLLCKFD 267 (366)
Q Consensus 194 ~~~~~~~~~v~--~~G~lYw~~~~~~~~~~~~~i~~fD~~~~-~~~~i-~lP~~~~~~~~~~~l~~~--~g~L~l~~~~~ 267 (366)
... .++. -+|.....+..+ ..|..+|+.++ ..... ..... ....+... +|.+.+....+
T Consensus 98 ~~v----~~~~~s~~~~~l~~~~~d------g~i~vw~~~~~~~~~~~~~~~~~-----~v~~~~~~p~~~~~l~~~~~d 162 (814)
T 3mkq_A 98 DYI----RSIAVHPTKPYVLSGSDD------LTVKLWNWENNWALEQTFEGHEH-----FVMCVAFNPKDPSTFASGCLD 162 (814)
T ss_dssp SCE----EEEEECSSSSEEEEEETT------SEEEEEEGGGTSEEEEEEECCSS-----CEEEEEEETTEEEEEEEEETT
T ss_pred CCE----EEEEEeCCCCEEEEEcCC------CEEEEEECCCCceEEEEEcCCCC-----cEEEEEEEcCCCCEEEEEeCC
Confidence 111 0111 134433333322 37899998875 33222 21111 22334444 34555555544
Q ss_pred CCCCCCcEEEEEeccCCCCCceEEEEEeccCCCceeeEEEEec--CCcEEEEEeeCCeEEEEeCCCCeEEE
Q 017748 268 DDDDDRPWDLWVMKEYGVNDSWTKLATLLNVGGGNVKPLVYSR--SEDKVLLHAVRGDLCWYDLERHRVRS 336 (366)
Q Consensus 268 ~~~~~~~l~iW~l~~~~~~~~W~~~~~i~~~~~~~~~~~~~~~--~g~~i~~~~~~~~~~~yd~~t~~~~~ 336 (366)
. .+.+|-+.... ... .+..........+.+.. ++..++....++.+..||+++++...
T Consensus 163 g-----~v~vwd~~~~~--~~~----~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~ 222 (814)
T 3mkq_A 163 R-----TVKVWSLGQST--PNF----TLTTGQERGVNYVDYYPLPDKPYMITASDDLTIKIWDYQTKSCVA 222 (814)
T ss_dssp S-----EEEEEETTCSS--CSE----EEECCCTTCCCEEEECCSTTCCEEEEECTTSEEEEEETTTTEEEE
T ss_pred C-----eEEEEECCCCc--cee----EEecCCCCCEEEEEEEECCCCCEEEEEeCCCEEEEEECCCCcEEE
Confidence 4 89999886532 112 12111101133445554 66566666777789999999887543
|
| >3bg1_A Protein SEC13 homolog; NPC, transport, WD repeat, autocatalytic cleavage, mRNA transport, nuclear pore complex, nucleus, phosphoprotein; 3.00A {Homo sapiens} PDB: 3bg0_A | Back alignment and structure |
|---|
Probab=81.70 E-value=23 Score=30.07 Aligned_cols=75 Identities=9% Similarity=0.159 Sum_probs=43.9
Q ss_pred eEEEEEeecCCCCCCcEEEEEeccCCCCCceEEEEEeccCCCceeeEEEEecCCcEEEEEeeCCeEEEEeCC-CCeEEEe
Q 017748 259 CLCLLCKFDDDDDDRPWDLWVMKEYGVNDSWTKLATLLNVGGGNVKPLVYSRSEDKVLLHAVRGDLCWYDLE-RHRVRSI 337 (366)
Q Consensus 259 ~L~l~~~~~~~~~~~~l~iW~l~~~~~~~~W~~~~~i~~~~~~~~~~~~~~~~g~~i~~~~~~~~~~~yd~~-t~~~~~v 337 (366)
.+.+.+..+. .+.||.++... ...|.....-.... ...-+++.++|..|.....++.+..|+.. .+.|+.+
T Consensus 229 ~~las~s~D~-----~v~iw~~~~~~-~~~~~~~~~~~~~~--~v~~v~~sp~g~~las~~~D~~v~lw~~~~~g~~~~~ 300 (316)
T 3bg1_A 229 STIASCSQDG-----RVFIWTCDDAS-SNTWSPKLLHKFND--VVWHVSWSITANILAVSGGDNKVTLWKESVDGQWVCI 300 (316)
T ss_dssp CEEEEEETTC-----EEEEEECSSTT-CCCCBCCEEEECSS--CEEEEEECTTTCCEEEEESSSCEEEEEECTTSCEEEE
T ss_pred ceEEEEcCCC-----eEEEEEccCcc-ccchhhhhhhcCCC--cEEEEEEcCCCCEEEEEcCCCeEEEEEECCCCcEEEe
Confidence 4444444444 89999987632 12343211111111 14456677888566666777779999976 5678877
Q ss_pred eeec
Q 017748 338 VEID 341 (366)
Q Consensus 338 ~~~~ 341 (366)
.++.
T Consensus 301 ~~~~ 304 (316)
T 3bg1_A 301 SDVN 304 (316)
T ss_dssp EECC
T ss_pred eecc
Confidence 4454
|
| >3odt_A Protein DOA1; ubiquitin, nuclear protein; HET: MSE MES; 1.35A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=81.47 E-value=22 Score=29.60 Aligned_cols=191 Identities=10% Similarity=0.052 Sum_probs=91.1
Q ss_pred ceeEEeecCCccEEEEEeccccceeecCCcCCCCCCCCcceEEEeeecCCCCeEEEEEEEEcCCCCccEEEEEEecCC-c
Q 017748 107 NGLLALEDSRRNIMLLLNPLTKRHRVLPTFYRDLSRCVPSLEGFGFDVGSGDFKLVKILAFGKPMNYTEVAVFSLRVN-S 185 (366)
Q Consensus 107 ~Gll~~~~~~~~~~~V~NP~t~~~~~LP~~~~~~~~~~~~~~~lg~d~~~~~ykvv~~~~~~~~~~~~~~~vyss~t~-~ 185 (366)
+++++....+..+. |||..+++....-... ......+.+.+. +.+-+.+.. ...+.+++..+. .
T Consensus 29 ~~~l~s~~~dg~v~-vw~~~~~~~~~~~~~~------~~~v~~~~~~~~-~~~l~~~~~-------dg~i~~~~~~~~~~ 93 (313)
T 3odt_A 29 DSKVASVSRDGTVR-LWSKDDQWLGTVVYTG------QGFLNSVCYDSE-KELLLFGGK-------DTMINGVPLFATSG 93 (313)
T ss_dssp TTEEEEEETTSEEE-EEEESSSEEEEEEEEC------SSCEEEEEEETT-TTEEEEEET-------TSCEEEEETTCCTT
T ss_pred CCEEEEEEcCCcEE-EEECCCCEEEEEeecC------CccEEEEEECCC-CCEEEEecC-------CCeEEEEEeeecCC
Confidence 44554444556677 8888776644332221 113445666663 233222211 334566665432 1
Q ss_pred EEEccCCCcceecCCcceEECCcEEEEEeeCCCCCCCcEEEEEECCCceeeeeCCCCccCCCCceEEEEEECCeEEEEEe
Q 017748 186 WRRIQDFPYFWVTGTCSVFVNGALHWTAALNQDADRNDIIIAFDLKSEEFYQVPLPPIVGIEGYYILLEALGGCLCLLCK 265 (366)
Q Consensus 186 W~~~~~~~~~~~~~~~~v~~~G~lYw~~~~~~~~~~~~~i~~fD~~~~~~~~i~lP~~~~~~~~~~~l~~~~g~L~l~~~ 265 (366)
.+.+..+... ...-..+..+|.....+..+ ..|..+|.. +....+...... -........++.+.++..
T Consensus 94 ~~~~~~~~~~-~~~i~~~~~~~~~l~~~~~d------~~i~~~d~~-~~~~~~~~~~~~---v~~~~~~~~~~~~l~~~~ 162 (313)
T 3odt_A 94 EDPLYTLIGH-QGNVCSLSFQDGVVISGSWD------KTAKVWKEG-SLVYNLQAHNAS---VWDAKVVSFSENKFLTAS 162 (313)
T ss_dssp SCC-CEECCC-SSCEEEEEEETTEEEEEETT------SEEEEEETT-EEEEEEECCSSC---EEEEEEEETTTTEEEEEE
T ss_pred CCcccchhhc-ccCEEEEEecCCEEEEEeCC------CCEEEEcCC-cEEEecccCCCc---eeEEEEccCCCCEEEEEE
Confidence 1111111000 01112344566655555443 378888832 222222222211 011222222566666666
Q ss_pred ecCCCCCCcEEEEEeccCCCCCceEEEEEeccCCCceeeEEEEecCCcEEEEEeeCCeEEEEeCCCCeEEEe
Q 017748 266 FDDDDDDRPWDLWVMKEYGVNDSWTKLATLLNVGGGNVKPLVYSRSEDKVLLHAVRGDLCWYDLERHRVRSI 337 (366)
Q Consensus 266 ~~~~~~~~~l~iW~l~~~~~~~~W~~~~~i~~~~~~~~~~~~~~~~g~~i~~~~~~~~~~~yd~~t~~~~~v 337 (366)
.+. .+.+|-... ....+.........-+.+..++ .++....++.+..||+++++....
T Consensus 163 ~d~-----~i~i~d~~~--------~~~~~~~~~~~~i~~~~~~~~~-~~~~~~~dg~i~i~d~~~~~~~~~ 220 (313)
T 3odt_A 163 ADK-----TIKLWQNDK--------VIKTFSGIHNDVVRHLAVVDDG-HFISCSNDGLIKLVDMHTGDVLRT 220 (313)
T ss_dssp TTS-----CEEEEETTE--------EEEEECSSCSSCEEEEEEEETT-EEEEEETTSEEEEEETTTCCEEEE
T ss_pred CCC-----CEEEEecCc--------eEEEEeccCcccEEEEEEcCCC-eEEEccCCCeEEEEECCchhhhhh
Confidence 554 899996221 1222222111124556666777 566667777899999998875544
|
| >3zwl_B Eukaryotic translation initiation factor 3 subuni; 2.20A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=81.38 E-value=25 Score=30.08 Aligned_cols=72 Identities=8% Similarity=0.047 Sum_probs=44.5
Q ss_pred CCeEEEEEeecCCCCCCcEEEEEeccCCCCCceEEEEEeccCCCceeeEEEEecCCcEEEEEeeCCeEEEEeCCCCeEEE
Q 017748 257 GGCLCLLCKFDDDDDDRPWDLWVMKEYGVNDSWTKLATLLNVGGGNVKPLVYSRSEDKVLLHAVRGDLCWYDLERHRVRS 336 (366)
Q Consensus 257 ~g~L~l~~~~~~~~~~~~l~iW~l~~~~~~~~W~~~~~i~~~~~~~~~~~~~~~~g~~i~~~~~~~~~~~yd~~t~~~~~ 336 (366)
+|+..++...+. .+.+|-+... ...+..+.... ....-+.+..++..++....++.+..||+++++...
T Consensus 186 ~~~~l~~~~~dg-----~i~i~d~~~~-----~~~~~~~~~~~-~~v~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~ 254 (369)
T 3zwl_B 186 KGKYIIAGHKDG-----KISKYDVSNN-----YEYVDSIDLHE-KSISDMQFSPDLTYFITSSRDTNSFLVDVSTLQVLK 254 (369)
T ss_dssp GGCEEEEEETTS-----EEEEEETTTT-----TEEEEEEECCS-SCEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEE
T ss_pred CCCEEEEEcCCC-----EEEEEECCCC-----cEeEEEEecCC-CceeEEEECCCCCEEEEecCCceEEEEECCCCceee
Confidence 455555555444 8999987752 22333333211 114445666777667777777889999999988765
Q ss_pred eee
Q 017748 337 IVE 339 (366)
Q Consensus 337 v~~ 339 (366)
.+.
T Consensus 255 ~~~ 257 (369)
T 3zwl_B 255 KYE 257 (369)
T ss_dssp EEE
T ss_pred eec
Confidence 533
|
| >3ow8_A WD repeat-containing protein 61; structural genomics consortium, SGC, transcriptio; 2.30A {Homo sapiens} | Back alignment and structure |
|---|
Probab=80.87 E-value=26 Score=29.98 Aligned_cols=181 Identities=12% Similarity=0.095 Sum_probs=91.3
Q ss_pred cCCccEEEEEeccccceee-cCCcCCCCCCCCcceEEEeeecCCCCeEEEEEEEEcCCCCccEEEEEEecCCcEEE-ccC
Q 017748 114 DSRRNIMLLLNPLTKRHRV-LPTFYRDLSRCVPSLEGFGFDVGSGDFKLVKILAFGKPMNYTEVAVFSLRVNSWRR-IQD 191 (366)
Q Consensus 114 ~~~~~~~~V~NP~t~~~~~-LP~~~~~~~~~~~~~~~lg~d~~~~~ykvv~~~~~~~~~~~~~~~vyss~t~~W~~-~~~ 191 (366)
..+..+. +||..+++... +...+. ....+.+.|.. .+-+.. . ....+.+|+.+++.-.. +..
T Consensus 99 s~D~~i~-lWd~~~~~~~~~~~~~~~-------~~~~~~~spdg-~~l~~g-~------~dg~v~i~~~~~~~~~~~~~~ 162 (321)
T 3ow8_A 99 SLDAHIR-LWDLENGKQIKSIDAGPV-------DAWTLAFSPDS-QYLATG-T------HVGKVNIFGVESGKKEYSLDT 162 (321)
T ss_dssp ETTSEEE-EEETTTTEEEEEEECCTT-------CCCCEEECTTS-SEEEEE-C------TTSEEEEEETTTCSEEEEEEC
T ss_pred eCCCcEE-EEECCCCCEEEEEeCCCc-------cEEEEEECCCC-CEEEEE-c------CCCcEEEEEcCCCceeEEecC
Confidence 3456677 89988876533 222111 11234455532 222221 1 14467788877654221 111
Q ss_pred CCcceecCCcceE--ECCcEEEEEeeCCCCCCCcEEEEEECCCceeee-eCCCCccCCCCceEEEEEE-CCeEEEEEeec
Q 017748 192 FPYFWVTGTCSVF--VNGALHWTAALNQDADRNDIIIAFDLKSEEFYQ-VPLPPIVGIEGYYILLEAL-GGCLCLLCKFD 267 (366)
Q Consensus 192 ~~~~~~~~~~~v~--~~G~lYw~~~~~~~~~~~~~i~~fD~~~~~~~~-i~lP~~~~~~~~~~~l~~~-~g~L~l~~~~~ 267 (366)
..... .++. -+|.....+..+ ..|..+|+++.+... +...... ...+... +|++.+.+..+
T Consensus 163 ~~~~v----~~~~~spdg~~lasg~~d------g~i~iwd~~~~~~~~~~~~h~~~-----v~~l~~spd~~~l~s~s~d 227 (321)
T 3ow8_A 163 RGKFI----LSIAYSPDGKYLASGAID------GIINIFDIATGKLLHTLEGHAMP-----IRSLTFSPDSQLLVTASDD 227 (321)
T ss_dssp SSSCE----EEEEECTTSSEEEEEETT------SCEEEEETTTTEEEEEECCCSSC-----CCEEEECTTSCEEEEECTT
T ss_pred CCceE----EEEEECCCCCEEEEEcCC------CeEEEEECCCCcEEEEEcccCCc-----eeEEEEcCCCCEEEEEcCC
Confidence 00000 0111 145544444333 368899998876532 2322211 1123333 46655555544
Q ss_pred CCCCCCcEEEEEeccCCCCCceEEEEEeccCCCceeeEEEEecCCcEEEEEeeCCeEEEEeCCCCeEEEe
Q 017748 268 DDDDDRPWDLWVMKEYGVNDSWTKLATLLNVGGGNVKPLVYSRSEDKVLLHAVRGDLCWYDLERHRVRSI 337 (366)
Q Consensus 268 ~~~~~~~l~iW~l~~~~~~~~W~~~~~i~~~~~~~~~~~~~~~~g~~i~~~~~~~~~~~yd~~t~~~~~v 337 (366)
. .+.||-++.. .....+.... ....-+++.+++..++....++.+..||+++++....
T Consensus 228 g-----~i~iwd~~~~------~~~~~~~~h~-~~v~~~~~sp~~~~l~s~s~D~~v~iwd~~~~~~~~~ 285 (321)
T 3ow8_A 228 G-----YIKIYDVQHA------NLAGTLSGHA-SWVLNVAFCPDDTHFVSSSSDKSVKVWDVGTRTCVHT 285 (321)
T ss_dssp S-----CEEEEETTTC------CEEEEECCCS-SCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEE
T ss_pred C-----eEEEEECCCc------ceeEEEcCCC-CceEEEEECCCCCEEEEEeCCCcEEEEeCCCCEEEEE
Confidence 4 8999988752 1223332111 1144466777776666667777899999999875443
|
| >3mbr_X Glutamine cyclotransferase; beta-propeller; 1.44A {Xanthomonas campestris} | Back alignment and structure |
|---|
Probab=80.54 E-value=23 Score=29.33 Aligned_cols=143 Identities=10% Similarity=0.006 Sum_probs=82.4
Q ss_pred ccEEEEEEecCCcEEEccCCCcceecCCcc-eEECCcEEEEEeeCCCCCCCcEEEEEECCCcee-eeeCCCCccCCCCce
Q 017748 173 YTEVAVFSLRVNSWRRIQDFPYFWVTGTCS-VFVNGALHWTAALNQDADRNDIIIAFDLKSEEF-YQVPLPPIVGIEGYY 250 (366)
Q Consensus 173 ~~~~~vyss~t~~W~~~~~~~~~~~~~~~~-v~~~G~lYw~~~~~~~~~~~~~i~~fD~~~~~~-~~i~lP~~~~~~~~~ 250 (366)
...+.+++..++.=.....++... +..+ ...++.+|-++... ..+..||.++.+- ..++.|.. .
T Consensus 42 ~S~v~~vD~~tgkv~~~~~l~~~~--fgeGi~~~~~~ly~ltw~~------~~v~v~D~~tl~~~~ti~~~~~------G 107 (243)
T 3mbr_X 42 RSSVRKVDLETGRILQRAEVPPPY--FGAGIVAWRDRLIQLTWRN------HEGFVYDLATLTPRARFRYPGE------G 107 (243)
T ss_dssp SCEEEEEETTTCCEEEEEECCTTC--CEEEEEEETTEEEEEESSS------SEEEEEETTTTEEEEEEECSSC------C
T ss_pred CceEEEEECCCCCEEEEEeCCCCc--ceeEEEEeCCEEEEEEeeC------CEEEEEECCcCcEEEEEeCCCC------c
Confidence 467889999887543322333221 1123 44678888887554 4899999987554 55566542 2
Q ss_pred EEEEEECCeEEEEEeecCCCCCCcEEEEEeccCCCCCceEEEEEeccCCC--ceeeEEEE-ecCCcEEEEEee-CCeEEE
Q 017748 251 ILLEALGGCLCLLCKFDDDDDDRPWDLWVMKEYGVNDSWTKLATLLNVGG--GNVKPLVY-SRSEDKVLLHAV-RGDLCW 326 (366)
Q Consensus 251 ~~l~~~~g~L~l~~~~~~~~~~~~l~iW~l~~~~~~~~W~~~~~i~~~~~--~~~~~~~~-~~~g~~i~~~~~-~~~~~~ 326 (366)
.-|+.-+++|++... .. . |++++... =..+.+|..... ....+..+ +.+| +|+.... .+.+..
T Consensus 108 wglt~dg~~L~vSdg-s~-----~--l~~iDp~t----~~~~~~I~V~~~g~~~~~lNeLe~~~G-~lyanvw~s~~I~v 174 (243)
T 3mbr_X 108 WALTSDDSHLYMSDG-TA-----V--IRKLDPDT----LQQVGSIKVTAGGRPLDNLNELEWVNG-ELLANVWLTSRIAR 174 (243)
T ss_dssp CEEEECSSCEEEECS-SS-----E--EEEECTTT----CCEEEEEECEETTEECCCEEEEEEETT-EEEEEETTTTEEEE
T ss_pred eEEeeCCCEEEEECC-CC-----e--EEEEeCCC----CeEEEEEEEccCCcccccceeeEEeCC-EEEEEECCCCeEEE
Confidence 334555678888654 22 3 67777521 223444443211 00111111 2245 8887654 457999
Q ss_pred EeCCCCeEEEeeeecC
Q 017748 327 YDLERHRVRSIVEIDD 342 (366)
Q Consensus 327 yd~~t~~~~~v~~~~~ 342 (366)
.|++|++.....++.+
T Consensus 175 IDp~tG~V~~~idl~~ 190 (243)
T 3mbr_X 175 IDPASGKVVAWIDLQA 190 (243)
T ss_dssp ECTTTCBEEEEEECGG
T ss_pred EECCCCCEEEEEECCc
Confidence 9999999865557653
|
| >3p5b_L Low density lipoprotein receptor variant; B-propellor, convertase, hydrolase-lipid binding P complex; 3.30A {Homo sapiens} PDB: 3p5c_L | Back alignment and structure |
|---|
Probab=80.51 E-value=32 Score=30.79 Aligned_cols=179 Identities=12% Similarity=0.045 Sum_probs=91.3
Q ss_pred ceEEEeeecCCCCeEEEEEEEEcCCCCccEEEEEEecCCcEEEccCCCcceecCCcceEE---CCcEEEEEeeCCCCCCC
Q 017748 146 SLEGFGFDVGSGDFKLVKILAFGKPMNYTEVAVFSLRVNSWRRIQDFPYFWVTGTCSVFV---NGALHWTAALNQDADRN 222 (366)
Q Consensus 146 ~~~~lg~d~~~~~ykvv~~~~~~~~~~~~~~~vyss~t~~W~~~~~~~~~~~~~~~~v~~---~G~lYw~~~~~~~~~~~ 222 (366)
...++++|...+. |... +. ....+++++.....-+.+..-.. ....++.+ +|.+||......
T Consensus 160 ~p~glavD~~~~~--lY~~---d~--~~~~I~~~~~~g~~~~~l~~~~~---~~P~~iavdp~~g~ly~td~~~~----- 224 (400)
T 3p5b_L 160 APDGLAVDWIHSN--IYWT---DS--VLGTVSVADTKGVKRKTLFRENG---SKPRAIVVDPVHGFMYWTDWGTP----- 224 (400)
T ss_dssp CEEEEEEETTTTE--EEEE---ET--TTTEEEEECTTTCSEEEEEECSS---CCEEEEEEETTTTEEEEEECSSS-----
T ss_pred CcccEEEEecCCc--eEEE---EC--CCCeEEEEeCCCCceEEEEeCCC---CCcceEEEecccCeEEEEeCCCC-----
Confidence 4567888876542 2222 11 13356777776555444321000 11224444 589999764321
Q ss_pred cEEEEEECCCceeeeeCCCCccCCCCceEEEEEE--CCeEEEEEeecCCCCCCcEEEEEeccCCCCCceEEEEEeccCCC
Q 017748 223 DIIIAFDLKSEEFYQVPLPPIVGIEGYYILLEAL--GGCLCLLCKFDDDDDDRPWDLWVMKEYGVNDSWTKLATLLNVGG 300 (366)
Q Consensus 223 ~~i~~fD~~~~~~~~i~lP~~~~~~~~~~~l~~~--~g~L~l~~~~~~~~~~~~l~iW~l~~~~~~~~W~~~~~i~~~~~ 300 (366)
..|..+|+....-..+.- ... ...--|+.- +++||++.... -.|+..+-.+. .... +.. ....+
T Consensus 225 ~~I~~~~~dG~~~~~~~~-~~l---~~P~glavd~~~~~lY~aD~~~-------~~I~~~d~dG~-~~~~-~~~-~~~~l 290 (400)
T 3p5b_L 225 AKIKKGGLNGVDIYSLVT-ENI---QWPNGITLDLLSGRLYWVDSKL-------HSISSIDVNGG-NRKT-ILE-DEKRL 290 (400)
T ss_dssp CCEEEEETTSCSCEEEEC-SSC---SCEEEEEEETTTTEEEEEETTT-------TEEEEEETTSC-CCEE-EEE-CSSTT
T ss_pred CEEEEEeCCCCccEEEEE-CCC---CceEEEEEEeCCCEEEEEECCC-------CEEEEEeCCCC-ccEE-EEe-CCCCC
Confidence 268999987543333211 111 112234443 68999986543 24566654332 1111 111 11223
Q ss_pred ceeeEEEEecCCcEEEEEeeC-CeEEEEeCCCCeEEEeeeecCcccCeeeeeEEecCc
Q 017748 301 GNVKPLVYSRSEDKVLLHAVR-GDLCWYDLERHRVRSIVEIDDKVRRCDMRTVCVNTL 357 (366)
Q Consensus 301 ~~~~~~~~~~~g~~i~~~~~~-~~~~~yd~~t~~~~~v~~~~~~~~~~~~~~~y~~sl 357 (366)
..|.++...++.||+.... .++..+|..+++-..+.. .+ ........+|.+..
T Consensus 291 --~~P~gl~v~~~~lywtd~~~~~V~~~~~~~G~~~~~i~-~~-~~~p~~i~v~~~~~ 344 (400)
T 3p5b_L 291 --AHPFSLAVFEDKVFWTDIINEAIFSANRLTGSDVNLLA-EN-LLSPEDMVLFHNLT 344 (400)
T ss_dssp --SSEEEEEEETTEEEEEESSSCSEEEEESSSCCCCEEEE-CS-CSCEEEEEEESGGG
T ss_pred --CCCEEEEEeCCEEEEecCCCCeEEEEEcCCCCceEEEe-cC-CCCCceEEEEeecc
Confidence 6677777666688887654 459999977765433312 22 33345555665544
|
| >2ojh_A Uncharacterized protein ATU1656/AGR_C_3050; TOLB, 6-stranded beta-propeller, structural genomics, PSI-2; 1.85A {Agrobacterium tumefaciens str} | Back alignment and structure |
|---|
Probab=80.38 E-value=23 Score=29.04 Aligned_cols=186 Identities=15% Similarity=0.056 Sum_probs=95.7
Q ss_pred CccEEEEEeccccceeecCCcCCCCCCCCcceEEEeeecCCCCeEEEEEEEEcCCCCccEEEEEEecC-CcEEEccCCCc
Q 017748 116 RRNIMLLLNPLTKRHRVLPTFYRDLSRCVPSLEGFGFDVGSGDFKLVKILAFGKPMNYTEVAVFSLRV-NSWRRIQDFPY 194 (366)
Q Consensus 116 ~~~~~~V~NP~t~~~~~LP~~~~~~~~~~~~~~~lg~d~~~~~ykvv~~~~~~~~~~~~~~~vyss~t-~~W~~~~~~~~ 194 (366)
...++ ++|+.+++...+..... ....+.+.|.. .+-++. . ...+.+++..+ +....+.....
T Consensus 21 ~~~i~-~~d~~~~~~~~~~~~~~-------~v~~~~~spdg-~~l~~~--~------~~~i~~~d~~~~~~~~~~~~~~~ 83 (297)
T 2ojh_A 21 RSSIE-IFNIRTRKMRVVWQTPE-------LFEAPNWSPDG-KYLLLN--S------EGLLYRLSLAGDPSPEKVDTGFA 83 (297)
T ss_dssp CEEEE-EEETTTTEEEEEEEESS-------CCEEEEECTTS-SEEEEE--E------TTEEEEEESSSCCSCEECCCTTC
T ss_pred ceeEE-EEeCCCCceeeeccCCc-------ceEeeEECCCC-CEEEEE--c------CCeEEEEeCCCCCCceEeccccc
Confidence 45678 99999988776654321 23345565543 333322 1 34788999988 77665542211
Q ss_pred ceecCCcceEECCcEEEEEeeCCCCCCCcEEEEEECCCceeeeeCCCCccCCCCceEEEEEE-CCe-EEEEEeecCCCCC
Q 017748 195 FWVTGTCSVFVNGALHWTAALNQDADRNDIIIAFDLKSEEFYQVPLPPIVGIEGYYILLEAL-GGC-LCLLCKFDDDDDD 272 (366)
Q Consensus 195 ~~~~~~~~v~~~G~lYw~~~~~~~~~~~~~i~~fD~~~~~~~~i~lP~~~~~~~~~~~l~~~-~g~-L~l~~~~~~~~~~ 272 (366)
......-...-+|.....+..... ....|..+|..+.+...+..+.. ...+... +|+ |++....+.
T Consensus 84 ~~~~~~~~~spdg~~l~~~~~~~~--~~~~l~~~~~~~~~~~~~~~~~~------~~~~~~spdg~~l~~~~~~~~---- 151 (297)
T 2ojh_A 84 TICNNDHGISPDGALYAISDKVEF--GKSAIYLLPSTGGTPRLMTKNLP------SYWHGWSPDGKSFTYCGIRDQ---- 151 (297)
T ss_dssp CCBCSCCEECTTSSEEEEEECTTT--SSCEEEEEETTCCCCEECCSSSS------EEEEEECTTSSEEEEEEEETT----
T ss_pred cccccceEECCCCCEEEEEEeCCC--CcceEEEEECCCCceEEeecCCC------ccceEECCCCCEEEEEECCCC----
Confidence 000011011125654444432211 12478899988776554432221 1122232 455 444444443
Q ss_pred CcEEEEEeccCCCCCceEEEEEeccCCCceeeEEEEecCCcEEEEEee-CC--eEEEEeCCCCeEEEe
Q 017748 273 RPWDLWVMKEYGVNDSWTKLATLLNVGGGNVKPLVYSRSEDKVLLHAV-RG--DLCWYDLERHRVRSI 337 (366)
Q Consensus 273 ~~l~iW~l~~~~~~~~W~~~~~i~~~~~~~~~~~~~~~~g~~i~~~~~-~~--~~~~yd~~t~~~~~v 337 (366)
.+.||.++..+ .... .+.... ....-+.+..+|..|++... ++ +++.+++.++..+.+
T Consensus 152 -~~~l~~~~~~~--~~~~---~~~~~~-~~~~~~~~s~dg~~l~~~~~~~~~~~i~~~~~~~~~~~~~ 212 (297)
T 2ojh_A 152 -VFDIYSMDIDS--GVET---RLTHGE-GRNDGPDYSPDGRWIYFNSSRTGQMQIWRVRVDGSSVERI 212 (297)
T ss_dssp -EEEEEEEETTT--CCEE---ECCCSS-SCEEEEEECTTSSEEEEEECTTSSCEEEEEETTSSCEEEC
T ss_pred -ceEEEEEECCC--Ccce---EcccCC-CccccceECCCCCEEEEEecCCCCccEEEECCCCCCcEEE
Confidence 78999987532 1121 221111 11344556677766666653 32 477778777777666
|
| >1r5m_A SIR4-interacting protein SIF2; transcription corepressor, WD40 repeat, beta propeller; 1.55A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=80.29 E-value=29 Score=30.30 Aligned_cols=189 Identities=10% Similarity=0.067 Sum_probs=94.7
Q ss_pred eEEeecCCccEEEEEeccccceeecCCcCCCCCCCCcceEEEeeecCCCCeEEEEEEEEcCCCCccEEEEEEecCCcEEE
Q 017748 109 LLALEDSRRNIMLLLNPLTKRHRVLPTFYRDLSRCVPSLEGFGFDVGSGDFKLVKILAFGKPMNYTEVAVFSLRVNSWRR 188 (366)
Q Consensus 109 ll~~~~~~~~~~~V~NP~t~~~~~LP~~~~~~~~~~~~~~~lg~d~~~~~ykvv~~~~~~~~~~~~~~~vyss~t~~W~~ 188 (366)
+++.......+. |||...+....+... ......+.+.+. +.+ ++.... ...+.+|+..++.-..
T Consensus 122 ~l~~~~~dg~i~-i~~~~~~~~~~~~~~-------~~~v~~~~~~~~-~~~-l~~~~~------d~~i~iwd~~~~~~~~ 185 (425)
T 1r5m_A 122 SIVTGVENGELR-LWNKTGALLNVLNFH-------RAPIVSVKWNKD-GTH-IISMDV------ENVTILWNVISGTVMQ 185 (425)
T ss_dssp EEEEEETTSCEE-EEETTSCEEEEECCC-------CSCEEEEEECTT-SSE-EEEEET------TCCEEEEETTTTEEEE
T ss_pred EEEEEeCCCeEE-EEeCCCCeeeeccCC-------CccEEEEEECCC-CCE-EEEEec------CCeEEEEECCCCcEEE
Confidence 444444556688 898433334444321 123445666654 233 222221 3457788887765432
Q ss_pred ccCCCccee-------------cCCcceEECCcEEEEEeeCCCCCCCcEEEEEECCCceeeee-CCCCccCCCCceEEEE
Q 017748 189 IQDFPYFWV-------------TGTCSVFVNGALHWTAALNQDADRNDIIIAFDLKSEEFYQV-PLPPIVGIEGYYILLE 254 (366)
Q Consensus 189 ~~~~~~~~~-------------~~~~~v~~~G~lYw~~~~~~~~~~~~~i~~fD~~~~~~~~i-~lP~~~~~~~~~~~l~ 254 (366)
.-....... ......+..+..+..+... ..|..+|+.+.+.... ..... ....+.
T Consensus 186 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------g~i~~~d~~~~~~~~~~~~~~~-----~i~~~~ 254 (425)
T 1r5m_A 186 HFELKETGGSSINAENHSGDGSLGVDVEWVDDDKFVIPGPK------GAIFVYQITEKTPTGKLIGHHG-----PISVLE 254 (425)
T ss_dssp EECCC---------------CCCBSCCEEEETTEEEEECGG------GCEEEEETTCSSCSEEECCCSS-----CEEEEE
T ss_pred EeeccccCccceeeccccCCcceeeEEEEcCCCEEEEEcCC------CeEEEEEcCCCceeeeeccCCC-----ceEEEE
Confidence 211110000 0121223333333333333 3699999987644322 22111 223344
Q ss_pred EE-CCeEEEEEeecCCCCCCcEEEEEeccCCCCCceEEEEEeccCCCceeeEEEEecCCcEEEEEeeCCeEEEEeCCCCe
Q 017748 255 AL-GGCLCLLCKFDDDDDDRPWDLWVMKEYGVNDSWTKLATLLNVGGGNVKPLVYSRSEDKVLLHAVRGDLCWYDLERHR 333 (366)
Q Consensus 255 ~~-~g~L~l~~~~~~~~~~~~l~iW~l~~~~~~~~W~~~~~i~~~~~~~~~~~~~~~~g~~i~~~~~~~~~~~yd~~t~~ 333 (366)
.. +|++.++...+. .+.+|.++... .+..+.... ....-+.+..++ .++....++.+..||+++++
T Consensus 255 ~~~~~~~l~~~~~d~-----~i~i~d~~~~~------~~~~~~~~~-~~i~~~~~~~~~-~l~~~~~d~~i~i~d~~~~~ 321 (425)
T 1r5m_A 255 FNDTNKLLLSASDDG-----TLRIWHGGNGN------SQNCFYGHS-QSIVSASWVGDD-KVISCSMDGSVRLWSLKQNT 321 (425)
T ss_dssp EETTTTEEEEEETTS-----CEEEECSSSBS------CSEEECCCS-SCEEEEEEETTT-EEEEEETTSEEEEEETTTTE
T ss_pred ECCCCCEEEEEcCCC-----EEEEEECCCCc------cceEecCCC-ccEEEEEECCCC-EEEEEeCCCcEEEEECCCCc
Confidence 44 466555555444 89999887632 122222111 114445666677 67777778889999999988
Q ss_pred EEEe
Q 017748 334 VRSI 337 (366)
Q Consensus 334 ~~~v 337 (366)
....
T Consensus 322 ~~~~ 325 (425)
T 1r5m_A 322 LLAL 325 (425)
T ss_dssp EEEE
T ss_pred EeEe
Confidence 6554
|
| >3vl1_A 26S proteasome regulatory subunit RPN14; beta-propeller, chaperone, RPT6; 1.60A {Saccharomyces cerevisiae} PDB: 3acp_A | Back alignment and structure |
|---|
Probab=80.27 E-value=30 Score=30.42 Aligned_cols=189 Identities=11% Similarity=0.055 Sum_probs=97.1
Q ss_pred ceeEEeecCCccEEEEEeccccceeecCCcCCCCCCCCcceEEEeeecCCCCeEEEEEEEEcCCCCccEEEEEEecCCcE
Q 017748 107 NGLLALEDSRRNIMLLLNPLTKRHRVLPTFYRDLSRCVPSLEGFGFDVGSGDFKLVKILAFGKPMNYTEVAVFSLRVNSW 186 (366)
Q Consensus 107 ~Gll~~~~~~~~~~~V~NP~t~~~~~LP~~~~~~~~~~~~~~~lg~d~~~~~ykvv~~~~~~~~~~~~~~~vyss~t~~W 186 (366)
+.+++.......+. |||..+++....-... ......+.+.|.. .+ ++... ....+.+|+..++.=
T Consensus 109 ~~~l~~~~~dg~i~-iwd~~~~~~~~~~~~h------~~~v~~~~~~~~~-~~-l~s~s------~d~~i~iwd~~~~~~ 173 (420)
T 3vl1_A 109 MRRFILGTTEGDIK-VLDSNFNLQREIDQAH------VSEITKLKFFPSG-EA-LISSS------QDMQLKIWSVKDGSN 173 (420)
T ss_dssp SCEEEEEETTSCEE-EECTTSCEEEEETTSS------SSCEEEEEECTTS-SE-EEEEE------TTSEEEEEETTTCCC
T ss_pred CCEEEEEECCCCEE-EEeCCCcceeeecccc------cCccEEEEECCCC-CE-EEEEe------CCCeEEEEeCCCCcC
Confidence 33444444566788 9998888776543221 1234566776643 32 22222 145688888876431
Q ss_pred -EEccCCCcceecCCcceEE--CCcEEEEEeeCCCCCCCcEEEEEECCCceeee-eCCCCccCCCCceEEEEE-------
Q 017748 187 -RRIQDFPYFWVTGTCSVFV--NGALHWTAALNQDADRNDIIIAFDLKSEEFYQ-VPLPPIVGIEGYYILLEA------- 255 (366)
Q Consensus 187 -~~~~~~~~~~~~~~~~v~~--~G~lYw~~~~~~~~~~~~~i~~fD~~~~~~~~-i~lP~~~~~~~~~~~l~~------- 255 (366)
+.+..-... -.++.+ +|.....+..+ ..|..+|+.+.+... +..+.... .....+..
T Consensus 174 ~~~~~~h~~~----v~~~~~~~~~~~l~s~~~d------~~v~iwd~~~~~~~~~~~~~~~~~--~~v~~~~~~~~~~~~ 241 (420)
T 3vl1_A 174 PRTLIGHRAT----VTDIAIIDRGRNVLSASLD------GTIRLWECGTGTTIHTFNRKENPH--DGVNSIALFVGTDRQ 241 (420)
T ss_dssp CEEEECCSSC----EEEEEEETTTTEEEEEETT------SCEEEEETTTTEEEEEECBTTBTT--CCEEEEEEEECCCSS
T ss_pred ceEEcCCCCc----EEEEEEcCCCCEEEEEcCC------CcEEEeECCCCceeEEeecCCCCC--CCccEEEEecCCcce
Confidence 111111100 011211 45544444333 268899998765433 33322210 01111111
Q ss_pred ---------------ECCeEEEEEeecCCCCCCcEEEEEeccCCCCCceEEEEEeccCCCceeeEEEEecCCc-EEEEEe
Q 017748 256 ---------------LGGCLCLLCKFDDDDDDRPWDLWVMKEYGVNDSWTKLATLLNVGGGNVKPLVYSRSED-KVLLHA 319 (366)
Q Consensus 256 ---------------~~g~L~l~~~~~~~~~~~~l~iW~l~~~~~~~~W~~~~~i~~~~~~~~~~~~~~~~g~-~i~~~~ 319 (366)
-+|++.+++..++ .+.+|-+.... ....+.........-+++.+++. .++...
T Consensus 242 ~~~~~~~~v~~~~~s~~~~~l~~~~~dg-----~i~i~d~~~~~------~~~~~~~~~~~~v~~~~~~~~~~~~l~~g~ 310 (420)
T 3vl1_A 242 LHEISTSKKNNLEFGTYGKYVIAGHVSG-----VITVHNVFSKE------QTIQLPSKFTCSCNSLTVDGNNANYIYAGY 310 (420)
T ss_dssp CGGGCCCCCCTTCSSCTTEEEEEEETTS-----CEEEEETTTCC------EEEEECCTTSSCEEEEEECSSCTTEEEEEE
T ss_pred eeecccCcccceEEcCCCCEEEEEcCCC-----eEEEEECCCCc------eeEEcccccCCCceeEEEeCCCCCEEEEEe
Confidence 1466666555444 79999886521 23333221111245566677775 555566
Q ss_pred eCCeEEEEeCCCCe
Q 017748 320 VRGDLCWYDLERHR 333 (366)
Q Consensus 320 ~~~~~~~yd~~t~~ 333 (366)
.++.+..||+++++
T Consensus 311 ~dg~i~vwd~~~~~ 324 (420)
T 3vl1_A 311 ENGMLAQWDLRSPE 324 (420)
T ss_dssp TTSEEEEEETTCTT
T ss_pred CCCeEEEEEcCCCc
Confidence 67789999999864
|
| >2pm7_B Protein transport protein SEC13, protein transport protein SEC31; beta propeller, alpha solenoid; 2.35A {Saccharomyces cerevisiae} PDB: 2pm9_B 2pm6_B 3iko_A 3mzk_A 3mzl_A | Back alignment and structure |
|---|
Probab=80.08 E-value=26 Score=29.46 Aligned_cols=67 Identities=9% Similarity=0.074 Sum_probs=39.5
Q ss_pred CeEEEEEeecCCCCCCcEEEEEeccCCCCCceEEEEEeccCCCceeeEEEEecCC---cEEEEEeeCCeEEEEeCCCC
Q 017748 258 GCLCLLCKFDDDDDDRPWDLWVMKEYGVNDSWTKLATLLNVGGGNVKPLVYSRSE---DKVLLHAVRGDLCWYDLERH 332 (366)
Q Consensus 258 g~L~l~~~~~~~~~~~~l~iW~l~~~~~~~~W~~~~~i~~~~~~~~~~~~~~~~g---~~i~~~~~~~~~~~yd~~t~ 332 (366)
+++.+.+..+. .+.||-++.. ...|.....+..-. ....-+++.+++ ..+.-...++.+..||+++.
T Consensus 170 ~~~l~sgs~D~-----~v~lwd~~~~--~~~~~~~~~l~~H~-~~V~~v~~sp~~~~~~~las~s~D~~v~iWd~~~~ 239 (297)
T 2pm7_B 170 SRKFVTGGADN-----LVKIWKYNSD--AQTYVLESTLEGHS-DWVRDVAWSPTVLLRSYMASVSQDRTCIIWTQDNE 239 (297)
T ss_dssp CCEEEEEETTS-----CEEEEEEETT--TTEEEEEEEECCCS-SCEEEEEECCCCSSSEEEEEEETTSCEEEEEESST
T ss_pred cceEEEEcCCC-----cEEEEEEcCC--CceEEEEEEecCCC-CceEEEEECCCCCCceEEEEEECCCcEEEEEeCCC
Confidence 34555455444 8999998763 24576666664211 124455666653 23444556777999998774
|
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST
Original result of RPS-BLAST against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
E-value |
| 366 | ||||
| d1fs1a1 | 41 | a.158.1.1 (A:109-149) Skp2 {Human (Homo sapiens) [ | 3e-06 | |
| d2ovrb1 | 102 | a.158.1.1 (B:2263-2364) F-box/WD repeat-containing | 3e-05 |
| >d1fs1a1 a.158.1.1 (A:109-149) Skp2 {Human (Homo sapiens) [TaxId: 9606]} Length = 41 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: F-box domain superfamily: F-box domain family: F-box domain domain: Skp2 species: Human (Homo sapiens) [TaxId: 9606]
Score = 41.6 bits (98), Expect = 3e-06
Identities = 8/33 (24%), Positives = 15/33 (45%)
Query: 7 LPLDLIVDILIRLPVRSLARFRCVSRSFRSLID 39
LP +L++ I L + L + V + + L
Sbjct: 4 LPDELLLGIFSCLCLPELLKVSGVCKRWYRLAS 36
|
| >d2ovrb1 a.158.1.1 (B:2263-2364) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]} Length = 102 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: F-box domain superfamily: F-box domain family: F-box domain domain: F-box/WD repeat-containing protein 7, FBXW7 species: Human (Homo sapiens) [TaxId: 9606]
Score = 40.4 bits (94), Expect = 3e-05
Identities = 13/73 (17%), Positives = 25/73 (34%), Gaps = 5/73 (6%)
Query: 6 QLPLDLIVDILIRLPVRSLARFRCVSRSFRSLIDGQD-----FVNRYVNHSIETNSNLGL 60
LP +L + +L L + L + R +R L + ++ + +
Sbjct: 21 LLPKELALYVLSFLEPKDLLQAAQTCRYWRILAEDNLLWREKCKEEGIDEPLHIKRRKVI 80
Query: 61 FVSVENSKWKRRY 73
+S WK Y
Sbjct: 81 KPGFIHSPWKSAY 93
|
Homologous Domains Detected by HHsearch
Original result of HHsearch against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 366 | |||
| d1fs1a1 | 41 | Skp2 {Human (Homo sapiens) [TaxId: 9606]} | 99.3 | |
| d1zgka1 | 288 | Kelch-like ECH-associated protein 1, KEAP1 {Human | 99.0 | |
| d1zgka1 | 288 | Kelch-like ECH-associated protein 1, KEAP1 {Human | 98.96 | |
| d2ovrb1 | 102 | F-box/WD repeat-containing protein 7, FBXW7 {Human | 98.75 | |
| d1nexb1 | 100 | Cdc4 F-box and linker domains {Baker's yeast (Sacc | 98.62 | |
| d1k3ia3 | 387 | Galactose oxidase, central domain {Fungi (Fusarium | 98.61 | |
| d1p22a1 | 118 | F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Hom | 98.34 | |
| d1k3ia3 | 387 | Galactose oxidase, central domain {Fungi (Fusarium | 98.11 | |
| d1nr0a1 | 311 | Actin interacting protein 1 {Nematode (Caenorhabdi | 90.78 | |
| d1l0qa2 | 301 | Surface layer protein {Archaeon Methanosarcina maz | 90.36 | |
| d1k8kc_ | 371 | Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taur | 89.86 | |
| d2dg1a1 | 319 | Lactonase Drp35 {Staphylococcus aureus [TaxId: 128 | 89.79 | |
| d1gxra_ | 337 | Groucho/tle1, C-terminal domain {Human (Homo sapie | 89.6 | |
| d1kv9a2 | 560 | Quinoprotein alcohol dehydrogenase, N-terminal dom | 89.25 | |
| d2p4oa1 | 302 | Hypothetical protein All0351 homologue {Nostoc pun | 88.96 | |
| d1qksa2 | 432 | C-terminal (heme d1) domain of cytochrome cd1-nitr | 88.64 | |
| d1pbyb_ | 337 | Quinohemoprotein amine dehydrogenase B chain {Para | 88.45 | |
| d1flga_ | 582 | Ethanol dehydrogenase {Pseudomonas aeruginosa [Tax | 87.9 | |
| d2ovrb2 | 342 | F-box/WD repeat-containing protein 7, FBXW7 {Human | 86.04 | |
| d1nexb2 | 355 | Cdc4 propeller domain {Baker's yeast (Saccharomyce | 85.77 | |
| d1kb0a2 | 573 | Quinoprotein alcohol dehydrogenase, N-terminal dom | 85.68 | |
| d2ghsa1 | 295 | Regucalcin {Agrobacterium tumefaciens [TaxId: 358] | 85.03 | |
| d2ghsa1 | 295 | Regucalcin {Agrobacterium tumefaciens [TaxId: 358] | 84.41 | |
| d1jmxb_ | 346 | Quinohemoprotein amine dehydrogenase B chain {Pseu | 83.54 | |
| d2ad6a1 | 571 | Methanol dehydrogenase, heavy chain {Methylophilus | 82.47 | |
| d1k8kc_ | 371 | Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taur | 82.12 | |
| d1k32a3 | 360 | Tricorn protease domain 2 {Archaeon Thermoplasma a | 82.03 |
| >d1fs1a1 a.158.1.1 (A:109-149) Skp2 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: F-box domain superfamily: F-box domain family: F-box domain domain: Skp2 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.30 E-value=3.4e-13 Score=79.05 Aligned_cols=40 Identities=20% Similarity=0.301 Sum_probs=37.5
Q ss_pred CCCCcHHHHHHHHccCCcccceeeeccchhhhhhcCChhH
Q 017748 4 SVQLPLDLIVDILIRLPVRSLARFRCVSRSFRSLIDGQDF 43 (366)
Q Consensus 4 ~~~LP~dll~~IL~rLP~~~l~r~r~VcK~W~~li~s~~F 43 (366)
++.||+|++.+||++||++++.|++.|||+|+++++++.+
T Consensus 1 f~~LP~eil~~If~~L~~~dl~~~~~Vcr~w~~l~~~~~l 40 (41)
T d1fs1a1 1 WDSLPDELLLGIFSCLCLPELLKVSGVCKRWYRLASDESL 40 (41)
T ss_dssp CCSSCHHHHHHHHTTSCGGGHHHHHTTCHHHHHHHTCGGG
T ss_pred CCcCCHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCccc
Confidence 4689999999999999999999999999999999998864
|
| >d1zgka1 b.68.11.1 (A:322-609) Kelch-like ECH-associated protein 1, KEAP1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Kelch motif family: Kelch motif domain: Kelch-like ECH-associated protein 1, KEAP1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.00 E-value=1.3e-07 Score=80.57 Aligned_cols=201 Identities=10% Similarity=0.128 Sum_probs=127.2
Q ss_pred ccEEEEEeccccceeecCCcCCCCCCCCcceEEEeeecCCCCeEEEEEEEEcCCCCccEEEEEEecCCcEEEccCCCcce
Q 017748 117 RNIMLLLNPLTKRHRVLPTFYRDLSRCVPSLEGFGFDVGSGDFKLVKILAFGKPMNYTEVAVFSLRVNSWRRIQDFPYFW 196 (366)
Q Consensus 117 ~~~~~V~NP~t~~~~~LP~~~~~~~~~~~~~~~lg~d~~~~~ykvv~~~~~~~~~~~~~~~vyss~t~~W~~~~~~~~~~ 196 (366)
..+. ++||.|.+|..+|+++..+.. ..++. ++ + |++.+...........+++|+..++.|.....++...
T Consensus 70 ~~~~-~yd~~~~~w~~~~~~p~~r~~--~~~~~--~~---~--~i~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r 139 (288)
T d1zgka1 70 SALD-CYNPMTNQWSPCAPMSVPRNR--IGVGV--ID---G--HIYAVGGSHGCIHHNSVERYEPERDEWHLVAPMLTRR 139 (288)
T ss_dssp CCEE-EEETTTTEEEECCCCSSCCBT--CEEEE--ET---T--EEEEECCEETTEECCCEEEEETTTTEEEECCCCSSCC
T ss_pred chhh-hcccccccccccccccceecc--eeccc--cc---e--eeEEecceecccccceeeeeccccCcccccccccccc
Confidence 4678 999999999999988766542 12211 11 1 3444322222233456889999999999887766544
Q ss_pred ecCCcceEECCcEEEEEeeCCCCCCCcEEEEEECCCceeeeeCCCCccCCCCceEEEEEECCeEEEEEeecCCCCCCcEE
Q 017748 197 VTGTCSVFVNGALHWTAALNQDADRNDIIIAFDLKSEEFYQVPLPPIVGIEGYYILLEALGGCLCLLCKFDDDDDDRPWD 276 (366)
Q Consensus 197 ~~~~~~v~~~G~lYw~~~~~~~~~~~~~i~~fD~~~~~~~~i~lP~~~~~~~~~~~l~~~~g~L~l~~~~~~~~~~~~l~ 276 (366)
.. ...+..++.+|.+++... ......+..||+.+++|.....+.... ........+++++++....... ..-.
T Consensus 140 ~~-~~~~~~~~~~~~~GG~~~-~~~~~~~~~~d~~~~~~~~~~~~~~~~---~~~~~~~~~~~i~i~GG~~~~~--~~~~ 212 (288)
T d1zgka1 140 IG-VGVAVLNRLLYAVGGFDG-TNRLNSAECYYPERNEWRMITAMNTIR---SGAGVCVLHNCIYAAGGYDGQD--QLNS 212 (288)
T ss_dssp BS-CEEEEETTEEEEECCBCS-SCBCCCEEEEETTTTEEEECCCCSSCC---BSCEEEEETTEEEEECCBCSSS--BCCC
T ss_pred cc-ceeeeeeecceEecCccc-ccccceEEEeecccccccccccccccc---ccccccceeeeEEEecCccccc--cccc
Confidence 32 335678888888776542 223357899999999999885444331 3345677899999988765421 1234
Q ss_pred EEEeccCCCCCceEEEEEeccCCCceeeEEEEecCCcEEEEEeeC------CeEEEEeCCCCeEEEeeee
Q 017748 277 LWVMKEYGVNDSWTKLATLLNVGGGNVKPLVYSRSEDKVLLHAVR------GDLCWYDLERHRVRSIVEI 340 (366)
Q Consensus 277 iW~l~~~~~~~~W~~~~~i~~~~~~~~~~~~~~~~g~~i~~~~~~------~~~~~yd~~t~~~~~v~~~ 340 (366)
.|..+. ...+|..+..++.... .. .++..++ +|++.... ..+..||+++++|+.+-.+
T Consensus 213 ~~~~~~--~~~~~~~~~~~p~~r~--~~-~~~~~~~-~l~v~GG~~~~~~~~~v~~yd~~~~~W~~~~~~ 276 (288)
T d1zgka1 213 VERYDV--ETETWTFVAPMKHRRS--AL-GITVHQG-RIYVLGGYDGHTFLDSVECYDPDTDTWSEVTRM 276 (288)
T ss_dssp EEEEET--TTTEEEECCCCSSCCB--SC-EEEEETT-EEEEECCBCSSCBCCEEEEEETTTTEEEEEEEC
T ss_pred eeeeee--cceeeecccCccCccc--ce-EEEEECC-EEEEEecCCCCeecceEEEEECCCCEEEECCCC
Confidence 455554 2367888765554332 22 2222344 77776421 2389999999999999334
|
| >d1zgka1 b.68.11.1 (A:322-609) Kelch-like ECH-associated protein 1, KEAP1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Kelch motif family: Kelch motif domain: Kelch-like ECH-associated protein 1, KEAP1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.96 E-value=4.1e-08 Score=83.80 Aligned_cols=197 Identities=10% Similarity=0.054 Sum_probs=123.6
Q ss_pred ccEEEEEeccccceeecCCcCCCCCCCCcceEEEeeecCCCCeEEEEEE-EEcC---CCCccEEEEEEecCCcEEEccCC
Q 017748 117 RNIMLLLNPLTKRHRVLPTFYRDLSRCVPSLEGFGFDVGSGDFKLVKIL-AFGK---PMNYTEVAVFSLRVNSWRRIQDF 192 (366)
Q Consensus 117 ~~~~~V~NP~t~~~~~LP~~~~~~~~~~~~~~~lg~d~~~~~ykvv~~~-~~~~---~~~~~~~~vyss~t~~W~~~~~~ 192 (366)
..+. ++||.|++|..+|++|.++.. ..++.+ +. +++.+. .... ......+++|+..+++|+.++.+
T Consensus 19 ~~~~-~yd~~t~~W~~~~~~p~~R~~--~~~~~~------~~-~iyv~GG~~~~~~~~~~~~~~~~yd~~~~~w~~~~~~ 88 (288)
T d1zgka1 19 SYLE-AYNPSNGTWLRLADLQVPRSG--LAGCVV------GG-LLYAVGGRNNSPDGNTDSSALDCYNPMTNQWSPCAPM 88 (288)
T ss_dssp CCEE-EEETTTTEEEECCCCSSCCBS--CEEEEE------TT-EEEEECCEEEETTEEEECCCEEEEETTTTEEEECCCC
T ss_pred ceEE-EEECCCCeEEECCCCCCccce--eEEEEE------CC-EEEEEeCcccCCCCccccchhhhcccccccccccccc
Confidence 3466 999999999999988766432 222222 12 333332 1111 12356789999999999999888
Q ss_pred CcceecCCcceEECCcEEEEEeeCCCCCCCcEEEEEECCCceeeeeC-CCCccCCCCceEEEEEECCeEEEEEeecCCCC
Q 017748 193 PYFWVTGTCSVFVNGALHWTAALNQDADRNDIIIAFDLKSEEFYQVP-LPPIVGIEGYYILLEALGGCLCLLCKFDDDDD 271 (366)
Q Consensus 193 ~~~~~~~~~~v~~~G~lYw~~~~~~~~~~~~~i~~fD~~~~~~~~i~-lP~~~~~~~~~~~l~~~~g~L~l~~~~~~~~~ 271 (366)
|...... .++.++|++|.++..... ........+|+.++.|...+ .|... .....+..+++++++........
T Consensus 89 p~~r~~~-~~~~~~~~i~~~gg~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~r----~~~~~~~~~~~~~~~GG~~~~~~ 162 (288)
T d1zgka1 89 SVPRNRI-GVGVIDGHIYAVGGSHGC-IHHNSVERYEPERDEWHLVAPMLTRR----IGVGVAVLNRLLYAVGGFDGTNR 162 (288)
T ss_dssp SSCCBTC-EEEEETTEEEEECCEETT-EECCCEEEEETTTTEEEECCCCSSCC----BSCEEEEETTEEEEECCBCSSCB
T ss_pred cceecce-eccccceeeEEecceecc-cccceeeeeccccCcccccccccccc----ccceeeeeeecceEecCcccccc
Confidence 7654333 367789999998765432 22246788999999998874 44333 34455677999999877654221
Q ss_pred CCcEEEEEeccCCCCCceEEEEEeccCCCceeeEEEEecCCcEEEEEee-C-----CeEEEEeCCCCeEEEe
Q 017748 272 DRPWDLWVMKEYGVNDSWTKLATLLNVGGGNVKPLVYSRSEDKVLLHAV-R-----GDLCWYDLERHRVRSI 337 (366)
Q Consensus 272 ~~~l~iW~l~~~~~~~~W~~~~~i~~~~~~~~~~~~~~~~g~~i~~~~~-~-----~~~~~yd~~t~~~~~v 337 (366)
.-.++.++. ...+|......+... ........++ .|++... + .....||..+++|+.+
T Consensus 163 --~~~~~~~d~--~~~~~~~~~~~~~~~---~~~~~~~~~~-~i~i~GG~~~~~~~~~~~~~~~~~~~~~~~ 226 (288)
T d1zgka1 163 --LNSAECYYP--ERNEWRMITAMNTIR---SGAGVCVLHN-CIYAAGGYDGQDQLNSVERYDVETETWTFV 226 (288)
T ss_dssp --CCCEEEEET--TTTEEEECCCCSSCC---BSCEEEEETT-EEEEECCBCSSSBCCCEEEEETTTTEEEEC
T ss_pred --cceEEEeec--ccccccccccccccc---ccccccceee-eEEEecCccccccccceeeeeecceeeecc
Confidence 223455544 235687655444332 2222333334 5666532 1 2489999999999998
|
| >d2ovrb1 a.158.1.1 (B:2263-2364) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: F-box domain superfamily: F-box domain family: F-box domain domain: F-box/WD repeat-containing protein 7, FBXW7 species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.75 E-value=1.4e-09 Score=77.93 Aligned_cols=49 Identities=18% Similarity=0.174 Sum_probs=44.4
Q ss_pred CCCCCcHHHHHHHHccCCcccceeeeccchhhhhhcCChhHHHHHHhcc
Q 017748 3 TSVQLPLDLIVDILIRLPVRSLARFRCVSRSFRSLIDGQDFVNRYVNHS 51 (366)
Q Consensus 3 ~~~~LP~dll~~IL~rLP~~~l~r~r~VcK~W~~li~s~~F~~~~~~~~ 51 (366)
.++.||+||+.+||+.||+++|+++++|||+|+.++.++.+.+....+.
T Consensus 18 ~i~~LP~Eil~~Ils~Ld~~dL~~~~~vcr~w~~l~~~~~lW~~~~~r~ 66 (102)
T d2ovrb1 18 FISLLPKELALYVLSFLEPKDLLQAAQTCRYWRILAEDNLLWREKCKEE 66 (102)
T ss_dssp TTTSSCHHHHHHHHTTSCHHHHHHHTTSCHHHHHHHTCSHHHHHHHTTT
T ss_pred ChhhCCHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHc
Confidence 4678999999999999999999999999999999999999988766543
|
| >d1nexb1 a.158.1.1 (B:270-369) Cdc4 F-box and linker domains {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: F-box domain superfamily: F-box domain family: F-box domain domain: Cdc4 F-box and linker domains species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=98.62 E-value=2.2e-09 Score=76.50 Aligned_cols=43 Identities=16% Similarity=0.325 Sum_probs=37.8
Q ss_pred CCCCcHHHHHHHHccCCcccceeeeccchhhhhhcC-ChhHHHH
Q 017748 4 SVQLPLDLIVDILIRLPVRSLARFRCVSRSFRSLID-GQDFVNR 46 (366)
Q Consensus 4 ~~~LP~dll~~IL~rLP~~~l~r~r~VcK~W~~li~-s~~F~~~ 46 (366)
++.||+||+++||+.|++++|++++.|||+|+.+++ ++...+.
T Consensus 6 ~~~LP~Ell~~I~s~Ld~~dL~~~s~Vcr~W~~~~~~d~~LWr~ 49 (100)
T d1nexb1 6 ITSLPFEISLKIFNYLQFEDIINSLGVSQNWNKIIRKSTSLWKK 49 (100)
T ss_dssp HHHSCHHHHHHHHTTSCHHHHHHHTTTCHHHHHHHHTCSHHHHH
T ss_pred hhhCCHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHCCHHHHHH
Confidence 457999999999999999999999999999999985 5665543
|
| >d1k3ia3 b.69.1.1 (A:151-537) Galactose oxidase, central domain {Fungi (Fusarium sp.) [TaxId: 29916]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Galactose oxidase, central domain family: Galactose oxidase, central domain domain: Galactose oxidase, central domain species: Fungi (Fusarium sp.) [TaxId: 29916]
Probab=98.61 E-value=1.8e-07 Score=83.13 Aligned_cols=109 Identities=8% Similarity=-0.023 Sum_probs=73.7
Q ss_pred EEEEEeccccceeecCCcCCCCCCCCcceEEEeeecCCCCeEEEEEEEEcCCCCccEEEEEEecCCcEEEccCCCcceec
Q 017748 119 IMLLLNPLTKRHRVLPTFYRDLSRCVPSLEGFGFDVGSGDFKLVKILAFGKPMNYTEVAVFSLRVNSWRRIQDFPYFWVT 198 (366)
Q Consensus 119 ~~~V~NP~t~~~~~LP~~~~~~~~~~~~~~~lg~d~~~~~ykvv~~~~~~~~~~~~~~~vyss~t~~W~~~~~~~~~~~~ 198 (366)
.. ++||.|++|..+|+++..+.. .....+ ..+ +=+++.+.. .....+++|+..+++|+..+.++.....
T Consensus 54 ~~-~yd~~t~~w~~~~~~~~~~~~-~~~~~~--~~~---~g~i~v~Gg----~~~~~~~~yd~~~~~w~~~~~~~~~r~~ 122 (387)
T d1k3ia3 54 TS-SWDPSTGIVSDRTVTVTKHDM-FCPGIS--MDG---NGQIVVTGG----NDAKKTSLYDSSSDSWIPGPDMQVARGY 122 (387)
T ss_dssp EE-EECTTTCCBCCCEEEECSCCC-SSCEEE--ECT---TSCEEEECS----SSTTCEEEEEGGGTEEEECCCCSSCCSS
T ss_pred EE-EEECCCCcEeecCCCCCCccc-ceeEEE--Eec---CCcEEEeec----CCCcceeEecCccCcccccccccccccc
Confidence 56 899999999998877655432 112222 221 124444321 2245689999999999999888765544
Q ss_pred CCcceEECCcEEEEEeeCCCCCCCcEEEEEECCCceeeee
Q 017748 199 GTCSVFVNGALHWTAALNQDADRNDIIIAFDLKSEEFYQV 238 (366)
Q Consensus 199 ~~~~v~~~G~lYw~~~~~~~~~~~~~i~~fD~~~~~~~~i 238 (366)
....+..||.+|.+++..........+..||+.+++|..+
T Consensus 123 ~~~~~~~dG~v~v~GG~~~~~~~~~~v~~yd~~~~~W~~~ 162 (387)
T d1k3ia3 123 QSSATMSDGRVFTIGGSWSGGVFEKNGEVYSPSSKTWTSL 162 (387)
T ss_dssp CEEEECTTSCEEEECCCCCSSSCCCCEEEEETTTTEEEEE
T ss_pred cceeeecCCceeeeccccccccccceeeeecCCCCceeec
Confidence 4434445899999987654433345789999999999876
|
| >d1p22a1 a.158.1.1 (A:135-252) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: F-box domain superfamily: F-box domain family: F-box domain domain: F-box/WD-repeat protein 1 (beta-TRCP1) species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.34 E-value=3.6e-08 Score=72.39 Aligned_cols=42 Identities=14% Similarity=0.202 Sum_probs=38.2
Q ss_pred HHHHHHHHccCCcccceeeeccchhhhhhcCChhHHHHHHhc
Q 017748 9 LDLIVDILIRLPVRSLARFRCVSRSFRSLIDGQDFVNRYVNH 50 (366)
Q Consensus 9 ~dll~~IL~rLP~~~l~r~r~VcK~W~~li~s~~F~~~~~~~ 50 (366)
|||+..||+.|++++|+++.+|||+|+.+++++.+.+....+
T Consensus 20 ~EI~~~Ils~Ld~~dL~~~s~Vck~W~~l~~d~~lWk~~~~~ 61 (118)
T d1p22a1 20 DHIAENILSYLDAKSLCAAELVCKEWYRVTSDGMLWKKLIER 61 (118)
T ss_dssp HHHHHHHHTTCCHHHHHHHHHHCHHHHHHHHHTTHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHHHHHcCHHHHHHHHHh
Confidence 699999999999999999999999999999999888765443
|
| >d1k3ia3 b.69.1.1 (A:151-537) Galactose oxidase, central domain {Fungi (Fusarium sp.) [TaxId: 29916]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Galactose oxidase, central domain family: Galactose oxidase, central domain domain: Galactose oxidase, central domain species: Fungi (Fusarium sp.) [TaxId: 29916]
Probab=98.11 E-value=4.3e-06 Score=73.91 Aligned_cols=193 Identities=11% Similarity=-0.013 Sum_probs=110.0
Q ss_pred eccccceeecCCcCCCCCCCCcceEEEeeecCCCCeEEEEEEEEcCC------CCccEEEEEEecCCcEEEccCCCccee
Q 017748 124 NPLTKRHRVLPTFYRDLSRCVPSLEGFGFDVGSGDFKLVKILAFGKP------MNYTEVAVFSLRVNSWRRIQDFPYFWV 197 (366)
Q Consensus 124 NP~t~~~~~LP~~~~~~~~~~~~~~~lg~d~~~~~ykvv~~~~~~~~------~~~~~~~vyss~t~~W~~~~~~~~~~~ 197 (366)
.|.+++|...++.|.... ..+++ +..+ ||+.+.-.... .....+++|+..+++|+..+.++....
T Consensus 5 ~p~~g~W~~~~~~p~~~~----~~a~~---~~~g--kv~v~GG~~~~~~~~~~~~~~~~~~yd~~t~~w~~~~~~~~~~~ 75 (387)
T d1k3ia3 5 QPGLGRWGPTIDLPIVPA----AAAIE---PTSG--RVLMWSSYRNDAFGGSPGGITLTSSWDPSTGIVSDRTVTVTKHD 75 (387)
T ss_dssp CTTSCEEEEEEECSSCCS----EEEEE---TTTT--EEEEEEECCCTTTCSCCCSEEEEEEECTTTCCBCCCEEEECSCC
T ss_pred CCCCCccCCcCCCCcccc----EEEEE---eeCC--EEEEEEeecCcccCCCCCceeEEEEEECCCCcEeecCCCCCCcc
Confidence 588999988776654321 12222 2223 56665442211 234468899999999987654433222
Q ss_pred --cCCcceEECCcEEEEEeeCCCCCCCcEEEEEECCCceeeee-CCCCccCCCCceEEEEEECCeEEEEEeecCCCCCCc
Q 017748 198 --TGTCSVFVNGALHWTAALNQDADRNDIIIAFDLKSEEFYQV-PLPPIVGIEGYYILLEALGGCLCLLCKFDDDDDDRP 274 (366)
Q Consensus 198 --~~~~~v~~~G~lYw~~~~~~~~~~~~~i~~fD~~~~~~~~i-~lP~~~~~~~~~~~l~~~~g~L~l~~~~~~~~~~~~ 274 (366)
.....+..+|++|..+.... ..+..||+.+++|... .+|... ..+......+|+++++....... ...
T Consensus 76 ~~~~~~~~~~~g~i~v~Gg~~~-----~~~~~yd~~~~~w~~~~~~~~~r---~~~~~~~~~dG~v~v~GG~~~~~-~~~ 146 (387)
T d1k3ia3 76 MFCPGISMDGNGQIVVTGGNDA-----KKTSLYDSSSDSWIPGPDMQVAR---GYQSSATMSDGRVFTIGGSWSGG-VFE 146 (387)
T ss_dssp CSSCEEEECTTSCEEEECSSST-----TCEEEEEGGGTEEEECCCCSSCC---SSCEEEECTTSCEEEECCCCCSS-SCC
T ss_pred cceeEEEEecCCcEEEeecCCC-----cceeEecCccCcccccccccccc---cccceeeecCCceeeeccccccc-ccc
Confidence 22223456899998876542 3588999999999887 555443 12333333478999988754311 111
Q ss_pred EEEEEeccCCCCCceEEEEEeccCCC----------ceeeEEEE-ecCCcEEEEEee-CCeEEEEeCCCCeEEEe
Q 017748 275 WDLWVMKEYGVNDSWTKLATLLNVGG----------GNVKPLVY-SRSEDKVLLHAV-RGDLCWYDLERHRVRSI 337 (366)
Q Consensus 275 l~iW~l~~~~~~~~W~~~~~i~~~~~----------~~~~~~~~-~~~g~~i~~~~~-~~~~~~yd~~t~~~~~v 337 (366)
-+++..+. ...+|..+..+..... ....+..+ ..+| +++.... ...+..||+.+..|...
T Consensus 147 ~~v~~yd~--~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G-~~~~~g~~~~~~~~~~~~~~~~~~~ 218 (387)
T d1k3ia3 147 KNGEVYSP--SSKTWTSLPNAKVNPMLTADKQGLYRSDNHAWLFGWKKG-SVFQAGPSTAMNWYYTSGSGDVKSA 218 (387)
T ss_dssp CCEEEEET--TTTEEEEETTSCSGGGCCCCTTGGGTTTCSCCEEECGGG-CEEECCSSSEEEEEECSTTCEEEEE
T ss_pred ceeeeecC--CCCceeecCCCcccccccccccceeeccceeEEEEeCCC-CEEEecCcCCcEEecCcccCcEeec
Confidence 23444443 2367987643322110 00122222 2344 5555432 34588999999999876
|
| >d1nr0a1 b.69.4.1 (A:2-312) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Nematode (Caenorhabditis elegans) [TaxId: 6239]
Probab=90.78 E-value=3.4 Score=33.39 Aligned_cols=201 Identities=12% Similarity=0.052 Sum_probs=98.0
Q ss_pred ceeEEe-ecCCccEEEEEeccccceeecCCcCCCCCCCCcceEEEeeecCCCCeEEEEEEEEcCCCCccEEEEEEecCCc
Q 017748 107 NGLLAL-EDSRRNIMLLLNPLTKRHRVLPTFYRDLSRCVPSLEGFGFDVGSGDFKLVKILAFGKPMNYTEVAVFSLRVNS 185 (366)
Q Consensus 107 ~Gll~~-~~~~~~~~~V~NP~t~~~~~LP~~~~~~~~~~~~~~~lg~d~~~~~ykvv~~~~~~~~~~~~~~~vyss~t~~ 185 (366)
+|-++. ...+..+. |||..+++....-..... ......+.+.+.. .+-+++. . .....+.|++..++.
T Consensus 69 ~g~~latg~~dg~i~-iwd~~~~~~~~~~~~~~~----~~~v~~v~~s~d~-~~l~~~~---~--~~~~~~~v~~~~~~~ 137 (311)
T d1nr0a1 69 SGYYCASGDVHGNVR-IWDTTQTTHILKTTIPVF----SGPVKDISWDSES-KRIAAVG---E--GRERFGHVFLFDTGT 137 (311)
T ss_dssp TSSEEEEEETTSEEE-EEESSSTTCCEEEEEECS----SSCEEEEEECTTS-CEEEEEE---C--CSSCSEEEEETTTCC
T ss_pred CCCeEeccccCceEe-eeeeeccccccccccccc----cCccccccccccc-ccccccc---c--ccccccccccccccc
Confidence 444433 33455667 888777654321111111 1134456666643 3332221 1 112346677766553
Q ss_pred EEEccCCCcceecCCcceEE--CCcEEEEEeeCCCCCCCcEEEEEECCCceeeeeCCCCccCCCCceEEEEEE-CCeEEE
Q 017748 186 WRRIQDFPYFWVTGTCSVFV--NGALHWTAALNQDADRNDIIIAFDLKSEEFYQVPLPPIVGIEGYYILLEAL-GGCLCL 262 (366)
Q Consensus 186 W~~~~~~~~~~~~~~~~v~~--~G~lYw~~~~~~~~~~~~~i~~fD~~~~~~~~i~lP~~~~~~~~~~~l~~~-~g~L~l 262 (366)
-.. .+.... ..-.++.+ +|....++...+ ..|..||+.+.+.......... ....+... +|++.+
T Consensus 138 ~~~--~l~~h~-~~v~~v~~~~~~~~~l~sgs~d-----~~i~i~d~~~~~~~~~~~~~~~----~i~~v~~~p~~~~l~ 205 (311)
T d1nr0a1 138 SNG--NLTGQA-RAMNSVDFKPSRPFRIISGSDD-----NTVAIFEGPPFKFKSTFGEHTK----FVHSVRYNPDGSLFA 205 (311)
T ss_dssp BCB--CCCCCS-SCEEEEEECSSSSCEEEEEETT-----SCEEEEETTTBEEEEEECCCSS----CEEEEEECTTSSEEE
T ss_pred ccc--cccccc-cccccccccccceeeecccccc-----cccccccccccccccccccccc----cccccccCccccccc
Confidence 211 111000 00112323 355444443332 2688899998765444221111 12233333 566666
Q ss_pred EEeecCCCCCCcEEEEEeccCCCCCceEEEEEeccCCC------ceeeEEEEecCCcEEEEEeeCCeEEEEeCCCCeEEE
Q 017748 263 LCKFDDDDDDRPWDLWVMKEYGVNDSWTKLATLLNVGG------GNVKPLVYSRSEDKVLLHAVRGDLCWYDLERHRVRS 336 (366)
Q Consensus 263 ~~~~~~~~~~~~l~iW~l~~~~~~~~W~~~~~i~~~~~------~~~~~~~~~~~g~~i~~~~~~~~~~~yd~~t~~~~~ 336 (366)
.+..+. .+.+|-+.+ +.++..+..... ....-+++..+|+.|+-...++.+..||.++++..+
T Consensus 206 ~~~~d~-----~v~~~d~~~------~~~~~~~~~~~~~~~~h~~~V~~~~~s~~~~~l~tgs~Dg~v~iwd~~t~~~~~ 274 (311)
T d1nr0a1 206 STGGDG-----TIVLYNGVD------GTKTGVFEDDSLKNVAHSGSVFGLTWSPDGTKIASASADKTIKIWNVATLKVEK 274 (311)
T ss_dssp EEETTS-----CEEEEETTT------CCEEEECBCTTSSSCSSSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEE
T ss_pred cccccc-----ccccccccc------ccccccccccccccccccccccccccCCCCCEEEEEeCCCeEEEEECCCCcEEE
Confidence 555444 899998765 223344433221 113345666777666666667789999999998765
Q ss_pred eeeec
Q 017748 337 IVEID 341 (366)
Q Consensus 337 v~~~~ 341 (366)
.+...
T Consensus 275 ~l~~~ 279 (311)
T d1nr0a1 275 TIPVG 279 (311)
T ss_dssp EEECC
T ss_pred EEECC
Confidence 43443
|
| >d1l0qa2 b.69.2.3 (A:1-301) Surface layer protein {Archaeon Methanosarcina mazei [TaxId: 2209]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: YVTN repeat domain: Surface layer protein species: Archaeon Methanosarcina mazei [TaxId: 2209]
Probab=90.36 E-value=2.3 Score=33.45 Aligned_cols=96 Identities=14% Similarity=0.111 Sum_probs=57.7
Q ss_pred cEEEEEECCCceee-eeCCCCccCCCCceEEEEEE-CCe-EEEEEeecCCCCCCcEEEEEeccCCCCCceEEEEEeccCC
Q 017748 223 DIIIAFDLKSEEFY-QVPLPPIVGIEGYYILLEAL-GGC-LCLLCKFDDDDDDRPWDLWVMKEYGVNDSWTKLATLLNVG 299 (366)
Q Consensus 223 ~~i~~fD~~~~~~~-~i~lP~~~~~~~~~~~l~~~-~g~-L~l~~~~~~~~~~~~l~iW~l~~~~~~~~W~~~~~i~~~~ 299 (366)
..|..+|+++.+.. .++++... ..++.. +|+ |++....+. .+.+|-++. ...+.+++...
T Consensus 12 ~~v~v~D~~t~~~~~~i~~g~~p------~~va~spdG~~l~v~~~~~~-----~i~v~d~~t------~~~~~~~~~~~ 74 (301)
T d1l0qa2 12 DNISVIDVTSNKVTATIPVGSNP------MGAVISPDGTKVYVANAHSN-----DVSIIDTAT------NNVIATVPAGS 74 (301)
T ss_dssp TEEEEEETTTTEEEEEEECSSSE------EEEEECTTSSEEEEEEGGGT-----EEEEEETTT------TEEEEEEECSS
T ss_pred CEEEEEECCCCeEEEEEECCCCc------eEEEEeCCCCEEEEEECCCC-----EEEEEECCC------Cceeeeeeccc
Confidence 37999999998764 44655432 234444 455 555444443 788887764 23455555433
Q ss_pred CceeeEEEEecCCcEEEEEee-CCeEEEEeCCCCeEEEe
Q 017748 300 GGNVKPLVYSRSEDKVLLHAV-RGDLCWYDLERHRVRSI 337 (366)
Q Consensus 300 ~~~~~~~~~~~~g~~i~~~~~-~~~~~~yd~~t~~~~~v 337 (366)
. ..-+.+..+++.+++... +..+..+|..+++....
T Consensus 75 ~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 111 (301)
T d1l0qa2 75 S--PQGVAVSPDGKQVYVTNMASSTLSVIDTTSNTVAGT 111 (301)
T ss_dssp S--EEEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEE
T ss_pred c--ccccccccccccccccccccceeeecccccceeeee
Confidence 2 344556666755665543 34588889988876544
|
| >d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Arp2/3 complex 41 kDa subunit ARPC1 species: Cow (Bos taurus) [TaxId: 9913]
Probab=89.86 E-value=1.8 Score=36.01 Aligned_cols=75 Identities=9% Similarity=0.231 Sum_probs=51.3
Q ss_pred CCeEEEEEeecCCCCCCcEEEEEeccCCCCCceEEEEEecc-CCCceeeEEEEecCCcEEEEEeeCCeEEEEeCCCCeEE
Q 017748 257 GGCLCLLCKFDDDDDDRPWDLWVMKEYGVNDSWTKLATLLN-VGGGNVKPLVYSRSEDKVLLHAVRGDLCWYDLERHRVR 335 (366)
Q Consensus 257 ~g~L~l~~~~~~~~~~~~l~iW~l~~~~~~~~W~~~~~i~~-~~~~~~~~~~~~~~g~~i~~~~~~~~~~~yd~~t~~~~ 335 (366)
+|++.+++..+. .+.||.++. +++..+..+.- ... ..-+++.++++.|+....++.+..||+++++++
T Consensus 18 dg~~la~~~~~~-----~i~iw~~~~----~~~~~~~~l~gH~~~--V~~l~fsp~~~~l~s~s~D~~i~vWd~~~~~~~ 86 (371)
T d1k8kc_ 18 DRTQIAICPNNH-----EVHIYEKSG----NKWVQVHELKEHNGQ--VTGVDWAPDSNRIVTCGTDRNAYVWTLKGRTWK 86 (371)
T ss_dssp TSSEEEEECSSS-----EEEEEEEET----TEEEEEEEEECCSSC--EEEEEEETTTTEEEEEETTSCEEEEEEETTEEE
T ss_pred CCCEEEEEeCCC-----EEEEEECCC----CCEEEEEEecCCCCC--EEEEEECCCCCEEEEEECCCeEEEEeecccccc
Confidence 566665555444 799998875 45777776642 221 455667788866666777778999999999988
Q ss_pred EeeeecC
Q 017748 336 SIVEIDD 342 (366)
Q Consensus 336 ~v~~~~~ 342 (366)
....+.+
T Consensus 87 ~~~~~~~ 93 (371)
T d1k8kc_ 87 PTLVILR 93 (371)
T ss_dssp EEEECCC
T ss_pred ccccccc
Confidence 7645543
|
| >d2dg1a1 b.68.6.1 (A:6-324) Lactonase Drp35 {Staphylococcus aureus [TaxId: 1280]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Calcium-dependent phosphotriesterase family: SGL-like domain: Lactonase Drp35 species: Staphylococcus aureus [TaxId: 1280]
Probab=89.79 E-value=4.3 Score=33.05 Aligned_cols=207 Identities=12% Similarity=0.054 Sum_probs=101.1
Q ss_pred ceeEEeec-CCccEEEEEeccccceeecCCcCCCCCCCCcceEEEeeecCCCCeEEEEEEEEcCCCCccEEEEEEecCCc
Q 017748 107 NGLLALED-SRRNIMLLLNPLTKRHRVLPTFYRDLSRCVPSLEGFGFDVGSGDFKLVKILAFGKPMNYTEVAVFSLRVNS 185 (366)
Q Consensus 107 ~Gll~~~~-~~~~~~~V~NP~t~~~~~LP~~~~~~~~~~~~~~~lg~d~~~~~ykvv~~~~~~~~~~~~~~~vyss~t~~ 185 (366)
+|-|.+.+ ...+++ .+||.+++......... ....++.+++.. ..-|... ........+..++..++.
T Consensus 50 ~G~Ly~~D~~~g~I~-ri~p~g~~~~~~~~~~~------~~p~gla~~~dG-~l~va~~---~~~~~~~~i~~~~~~~~~ 118 (319)
T d2dg1a1 50 QGQLFLLDVFEGNIF-KINPETKEIKRPFVSHK------ANPAAIKIHKDG-RLFVCYL---GDFKSTGGIFAATENGDN 118 (319)
T ss_dssp TSCEEEEETTTCEEE-EECTTTCCEEEEEECSS------SSEEEEEECTTS-CEEEEEC---TTSSSCCEEEEECTTSCS
T ss_pred CCCEEEEECCCCEEE-EEECCCCeEEEEEeCCC------CCeeEEEECCCC-CEEEEec---CCCccceeEEEEcCCCce
Confidence 34443333 556777 88998886544322111 124467776642 2222110 111122334445555544
Q ss_pred EEEcc-CCCcceecCCc-ceEECCcEEEEEeeCCCCCCCcEEEEEECCCceeeee----CCCCccCCCCceEEEEEE-CC
Q 017748 186 WRRIQ-DFPYFWVTGTC-SVFVNGALHWTAALNQDADRNDIIIAFDLKSEEFYQV----PLPPIVGIEGYYILLEAL-GG 258 (366)
Q Consensus 186 W~~~~-~~~~~~~~~~~-~v~~~G~lYw~~~~~~~~~~~~~i~~fD~~~~~~~~i----~lP~~~~~~~~~~~l~~~-~g 258 (366)
..... ...... .... .+--+|.+|+-............+..+|+.......+ ..|.. |+.. +|
T Consensus 119 ~~~~~~~~~~~~-~~nd~~~d~~G~l~vtd~~~~~~~~~g~v~~~~~dg~~~~~~~~~~~~pnG---------ia~s~dg 188 (319)
T d2dg1a1 119 LQDIIEDLSTAY-CIDDMVFDSKGGFYFTDFRGYSTNPLGGVYYVSPDFRTVTPIIQNISVANG---------IALSTDE 188 (319)
T ss_dssp CEEEECSSSSCC-CEEEEEECTTSCEEEEECCCBTTBCCEEEEEECTTSCCEEEEEEEESSEEE---------EEECTTS
T ss_pred eeeeccCCCccc-CCcceeEEeccceeecccccccccCcceeEEEecccceeEEEeeccceeee---------eeecccc
Confidence 43322 211111 1111 1224688776543322222234788888887665544 22221 3332 34
Q ss_pred -eEEEEEeecCCCCCCcEEEEEeccCCCCCceEEEEEeccCCCceeeEEE--EecCCcEEEEEee-CCeEEEEeCCCCeE
Q 017748 259 -CLCLLCKFDDDDDDRPWDLWVMKEYGVNDSWTKLATLLNVGGGNVKPLV--YSRSEDKVLLHAV-RGDLCWYDLERHRV 334 (366)
Q Consensus 259 -~L~l~~~~~~~~~~~~l~iW~l~~~~~~~~W~~~~~i~~~~~~~~~~~~--~~~~g~~i~~~~~-~~~~~~yd~~t~~~ 334 (366)
.||++..... ++..+.++..+. ..+..........-+...|-+ +..+| .|++... .+++..||++.+.+
T Consensus 189 ~~lyvad~~~~-----~I~~~d~~~~g~-~~~~~~~~~~~~~~~~~~PdGl~vD~~G-~l~Va~~~~g~V~~~~p~G~~l 261 (319)
T d2dg1a1 189 KVLWVTETTAN-----RLHRIALEDDGV-TIQPFGATIPYYFTGHEGPDSCCIDSDD-NLYVAMYGQGRVLVFNKRGYPI 261 (319)
T ss_dssp SEEEEEEGGGT-----EEEEEEECTTSS-SEEEEEEEEEEECCSSSEEEEEEEBTTC-CEEEEEETTTEEEEECTTSCEE
T ss_pred ceEEEecccCC-----ceEEEEEcCCCc-eeccccceeeeccCCccceeeeeEcCCC-CEEEEEcCCCEEEEECCCCcEE
Confidence 5777766444 555555554332 223332222211111144544 44566 7888754 56799999988888
Q ss_pred EEeeeecC
Q 017748 335 RSIVEIDD 342 (366)
Q Consensus 335 ~~v~~~~~ 342 (366)
+++ ++++
T Consensus 262 ~~i-~~P~ 268 (319)
T d2dg1a1 262 GQI-LIPG 268 (319)
T ss_dssp EEE-ECTT
T ss_pred EEE-eCCC
Confidence 888 8765
|
| >d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Groucho/tle1, C-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=89.60 E-value=4.4 Score=32.85 Aligned_cols=197 Identities=7% Similarity=0.017 Sum_probs=96.4
Q ss_pred eceeEEeecCCccEEEEEeccccceee-cCCcCCCCCCCCcceEEEeeecCCCCeEEEEEEEEcCCCCccEEEEEEecCC
Q 017748 106 CNGLLALEDSRRNIMLLLNPLTKRHRV-LPTFYRDLSRCVPSLEGFGFDVGSGDFKLVKILAFGKPMNYTEVAVFSLRVN 184 (366)
Q Consensus 106 ~~Gll~~~~~~~~~~~V~NP~t~~~~~-LP~~~~~~~~~~~~~~~lg~d~~~~~ykvv~~~~~~~~~~~~~~~vyss~t~ 184 (366)
.+|-.+....+..+. |||..+..... +.......+ ......+.+.|. +.+-+++ .. ...+.+|+....
T Consensus 61 ~~g~~latg~dg~V~-iWd~~~~~~~~~~~~~~~~~h--~~~I~~v~~s~d-g~~l~s~-~~------dg~i~iwd~~~~ 129 (337)
T d1gxra_ 61 NPTRHVYTGGKGCVK-VWDISHPGNKSPVSQLDCLNR--DNYIRSCKLLPD-GCTLIVG-GE------ASTLSIWDLAAP 129 (337)
T ss_dssp SSSSEEEEECBSEEE-EEETTSTTCCSCSEEEECSCT--TSBEEEEEECTT-SSEEEEE-ES------SSEEEEEECCCC
T ss_pred CCCCEEEEEECCEEE-EEEccCCcccceeEEeeecCC--CCcEEEEEEcCC-CCEEEEe-ec------cccccccccccc
Confidence 344443333345567 88876543221 111111111 123445566554 3443322 21 456888988766
Q ss_pred cEEEccCCCcceecCCcceE--ECCcEEEEEeeCCCCCCCcEEEEEECCCceeeeeCCCCccCCCCceEEEEEE-CCeEE
Q 017748 185 SWRRIQDFPYFWVTGTCSVF--VNGALHWTAALNQDADRNDIIIAFDLKSEEFYQVPLPPIVGIEGYYILLEAL-GGCLC 261 (366)
Q Consensus 185 ~W~~~~~~~~~~~~~~~~v~--~~G~lYw~~~~~~~~~~~~~i~~fD~~~~~~~~i~lP~~~~~~~~~~~l~~~-~g~L~ 261 (366)
+.+....+..... ....+. -+|.+...+... ..+..+|+.+++.......... ....+... +|...
T Consensus 130 ~~~~~~~~~~~~~-~v~~~~~~~~~~~l~s~~~d------~~i~~~~~~~~~~~~~~~~~~~----~v~~l~~s~~~~~~ 198 (337)
T d1gxra_ 130 TPRIKAELTSSAP-ACYALAISPDSKVCFSCCSD------GNIAVWDLHNQTLVRQFQGHTD----GASCIDISNDGTKL 198 (337)
T ss_dssp --EEEEEEECSSS-CEEEEEECTTSSEEEEEETT------SCEEEEETTTTEEEEEECCCSS----CEEEEEECTTSSEE
T ss_pred ccccccccccccc-cccccccccccccccccccc------cccccccccccccccccccccc----cccccccccccccc
Confidence 5544322211100 000111 134444433333 3688999988766444222111 12233332 45555
Q ss_pred EEEeecCCCCCCcEEEEEeccCCCCCceEEEEEeccCCCceeeEEEEecCCcEEEEEeeCCeEEEEeCCCCeEEEe
Q 017748 262 LLCKFDDDDDDRPWDLWVMKEYGVNDSWTKLATLLNVGGGNVKPLVYSRSEDKVLLHAVRGDLCWYDLERHRVRSI 337 (366)
Q Consensus 262 l~~~~~~~~~~~~l~iW~l~~~~~~~~W~~~~~i~~~~~~~~~~~~~~~~g~~i~~~~~~~~~~~yd~~t~~~~~v 337 (366)
+++..+. .+.+|-+... ..+........ ..-+++.++++.++....++.+..||+++++....
T Consensus 199 ~~~~~d~-----~v~i~d~~~~------~~~~~~~~~~~--i~~l~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~ 261 (337)
T d1gxra_ 199 WTGGLDN-----TVRSWDLREG------RQLQQHDFTSQ--IFSLGYCPTGEWLAVGMESSNVEVLHVNKPDKYQL 261 (337)
T ss_dssp EEEETTS-----EEEEEETTTT------EEEEEEECSSC--EEEEEECTTSSEEEEEETTSCEEEEETTSSCEEEE
T ss_pred ccccccc-----cccccccccc------eeecccccccc--eEEEEEcccccccceeccccccccccccccccccc
Confidence 5555444 7899987652 12233332221 33455667776676667777899999998886555
|
| >d1kv9a2 b.70.1.1 (A:1-560) Quinoprotein alcohol dehydrogenase, N-terminal domain {Pseudomonas putida, hk5 [TaxId: 303]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: Quinoprotein alcohol dehydrogenase-like family: Quinoprotein alcohol dehydrogenase-like domain: Quinoprotein alcohol dehydrogenase, N-terminal domain species: Pseudomonas putida, hk5 [TaxId: 303]
Probab=89.25 E-value=1.5 Score=39.48 Aligned_cols=124 Identities=15% Similarity=0.078 Sum_probs=62.5
Q ss_pred CCcceEECCcEEEEEeeCCCCCCCcEEEEEECCCc--eeeee-CCCCcc----CCCCceEEEEEECCeEEEEEeecCCCC
Q 017748 199 GTCSVFVNGALHWTAALNQDADRNDIIIAFDLKSE--EFYQV-PLPPIV----GIEGYYILLEALGGCLCLLCKFDDDDD 271 (366)
Q Consensus 199 ~~~~v~~~G~lYw~~~~~~~~~~~~~i~~fD~~~~--~~~~i-~lP~~~----~~~~~~~~l~~~~g~L~l~~~~~~~~~ 271 (366)
...+++++|++|..+..+ .|+++|.++. .|+.- ..+... ........+...++++++....
T Consensus 59 ~stPiv~~g~vyv~t~~~-------~v~AlDa~tG~~lW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~----- 126 (560)
T d1kv9a2 59 EATPLFHDGVIYTSMSWS-------RVIAVDAASGKELWRYDPEVAKVKARTSCCDAVNRGVALWGDKVYVGTLD----- 126 (560)
T ss_dssp CCCCEEETTEEEEEEGGG-------EEEEEETTTCCEEEEECCCCCGGGGGGCTTCSCCCCCEEEBTEEEEECTT-----
T ss_pred EeCCEEECCEEEEECCCC-------eEEEEeCCCCCEEEEECCCCCccccccccccccccCcceeCCeEEEEeCC-----
Confidence 355899999999877654 8999999975 55432 222111 0111122334445555554331
Q ss_pred CCcEEEEEeccCCCCCceEEEEEeccCCCce-eeEEEEecCCcEEEEEee------CCeEEEEeCCCCeEEEeeee
Q 017748 272 DRPWDLWVMKEYGVNDSWTKLATLLNVGGGN-VKPLVYSRSEDKVLLHAV------RGDLCWYDLERHRVRSIVEI 340 (366)
Q Consensus 272 ~~~l~iW~l~~~~~~~~W~~~~~i~~~~~~~-~~~~~~~~~g~~i~~~~~------~~~~~~yd~~t~~~~~v~~~ 340 (366)
-.|..++....+..|+....-....... ..|.. . ++ .|++... .+.+.+||.+|++..+-++.
T Consensus 127 ---g~l~Alda~tG~~~w~~~~~~~~~~~~~~~~p~v-~-~~-~vivg~~~~~~~~~G~v~a~D~~TG~~~W~~~t 196 (560)
T d1kv9a2 127 ---GRLIALDAKTGKAIWSQQTTDPAKPYSITGAPRV-V-KG-KVIIGNGGAEYGVRGFVSAYDADTGKLAWRFYT 196 (560)
T ss_dssp ---SEEEEEETTTCCEEEEEECSCTTSSCBCCSCCEE-E-TT-EEEECCBCTTTCCBCEEEEEETTTCCEEEEEES
T ss_pred ---CEEEEEECCCCcEEeccCccCcccceeeeeeeee-e-cC-cccccccceeccccceEEEEECCCceEEeeeee
Confidence 1233444322233344321111111111 22222 2 23 5555432 13599999999998876444
|
| >d2p4oa1 b.68.6.3 (A:4-305) Hypothetical protein All0351 homologue {Nostoc punctiforme [TaxId: 272131]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Calcium-dependent phosphotriesterase family: All0351-like domain: Hypothetical protein All0351 homologue species: Nostoc punctiforme [TaxId: 272131]
Probab=88.96 E-value=4.7 Score=32.37 Aligned_cols=112 Identities=13% Similarity=0.024 Sum_probs=66.9
Q ss_pred EECCcEEEEEeeCCCCCCCcEEEEEECCCceeeeeCCCCccCCCCceEEEEE-ECCeEEEEEeecCCCCCCcEEEEEecc
Q 017748 204 FVNGALHWTAALNQDADRNDIIIAFDLKSEEFYQVPLPPIVGIEGYYILLEA-LGGCLCLLCKFDDDDDDRPWDLWVMKE 282 (366)
Q Consensus 204 ~~~G~lYw~~~~~~~~~~~~~i~~fD~~~~~~~~i~lP~~~~~~~~~~~l~~-~~g~L~l~~~~~~~~~~~~l~iW~l~~ 282 (366)
--+|.+|+..... ..|..+|+..+.-.....|... ..++. -+|+|+++..... .+..|.++.
T Consensus 36 ~pdG~l~vt~~~~------~~I~~i~p~g~~~~~~~~~~~~------~gla~~~dG~l~v~~~~~~-----~~~~~~~~~ 98 (302)
T d2p4oa1 36 APDGTIFVTNHEV------GEIVSITPDGNQQIHATVEGKV------SGLAFTSNGDLVATGWNAD-----SIPVVSLVK 98 (302)
T ss_dssp CTTSCEEEEETTT------TEEEEECTTCCEEEEEECSSEE------EEEEECTTSCEEEEEECTT-----SCEEEEEEC
T ss_pred CCCCCEEEEeCCC------CEEEEEeCCCCEEEEEcCCCCc------ceEEEcCCCCeEEEecCCc-----eEEEEEecc
Confidence 3478887654433 4899999887654444555433 22333 3689888876554 666666655
Q ss_pred CCCCCceEEEEEeccCCCceeeEEEEecCCcEEEEEe-eCCeEEEEeCCCCeEEEe
Q 017748 283 YGVNDSWTKLATLLNVGGGNVKPLVYSRSEDKVLLHA-VRGDLCWYDLERHRVRSI 337 (366)
Q Consensus 283 ~~~~~~W~~~~~i~~~~~~~~~~~~~~~~g~~i~~~~-~~~~~~~yd~~t~~~~~v 337 (366)
.. ..-..+...+.... ..-+.+..+| .+++.. ...+++.+|+.++....+
T Consensus 99 ~~--~~~~~~~~~~~~~~--~n~i~~~~~g-~~~v~~~~~~~i~~~~~~~~~~~~~ 149 (302)
T d2p4oa1 99 SD--GTVETLLTLPDAIF--LNGITPLSDT-QYLTADSYRGAIWLIDVVQPSGSIW 149 (302)
T ss_dssp TT--SCEEEEEECTTCSC--EEEEEESSSS-EEEEEETTTTEEEEEETTTTEEEEE
T ss_pred cc--cceeeccccCCccc--cceeEEccCC-CEEeeccccccceeeeccCCcceeE
Confidence 32 32334444443322 3344455566 666654 345799999999987655
|
| >d1qksa2 b.70.2.1 (A:136-567) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Paracoccus denitrificans [TaxId: 266]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase species: Paracoccus denitrificans [TaxId: 266]
Probab=88.64 E-value=6.4 Score=33.51 Aligned_cols=201 Identities=11% Similarity=-0.024 Sum_probs=105.9
Q ss_pred eeEEee-cCCccEEEEEeccccceee-cCCcCCCCCCCCcceEEEeeecCCCCeEEEEEEEEcCCCCccEEEEEEecCCc
Q 017748 108 GLLALE-DSRRNIMLLLNPLTKRHRV-LPTFYRDLSRCVPSLEGFGFDVGSGDFKLVKILAFGKPMNYTEVAVFSLRVNS 185 (366)
Q Consensus 108 Gll~~~-~~~~~~~~V~NP~t~~~~~-LP~~~~~~~~~~~~~~~lg~d~~~~~ykvv~~~~~~~~~~~~~~~vyss~t~~ 185 (366)
.|+.+. .+...+. |+|+.|++... ++.- ....++.|.|. ++|-.+.- . ...+.+++..++.
T Consensus 32 ~~~~v~~~d~g~v~-v~D~~t~~v~~~~~~g--------~~~~~v~fSpD-G~~l~~~s---~----dg~v~~~d~~t~~ 94 (432)
T d1qksa2 32 NLFSVTLRDAGQIA-LIDGSTYEIKTVLDTG--------YAVHISRLSAS-GRYLFVIG---R----DGKVNMIDLWMKE 94 (432)
T ss_dssp GEEEEEETTTTEEE-EEETTTCCEEEEEECS--------SCEEEEEECTT-SCEEEEEE---T----TSEEEEEETTSSS
T ss_pred cEEEEEEcCCCEEE-EEECCCCcEEEEEeCC--------CCeeEEEECCC-CCEEEEEc---C----CCCEEEEEeeCCC
Confidence 354333 3566788 99999988755 3321 12345667664 44544431 1 3468889987765
Q ss_pred EEEccCCCcc---ee-cCCcceEECCcEEEEEeeCCCCCCCcEEEEEECCCceeeee-CCCCcc------CCCCceEEEE
Q 017748 186 WRRIQDFPYF---WV-TGTCSVFVNGALHWTAALNQDADRNDIIIAFDLKSEEFYQV-PLPPIV------GIEGYYILLE 254 (366)
Q Consensus 186 W~~~~~~~~~---~~-~~~~~v~~~G~lYw~~~~~~~~~~~~~i~~fD~~~~~~~~i-~lP~~~------~~~~~~~~l~ 254 (366)
-.....++.. .. .......-+|...+.+.... ..+..+|.++.+.... ..+... ........+.
T Consensus 95 ~~~~~~i~~~~~~~~~~~s~~~SpDG~~l~vs~~~~-----~~v~i~d~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~v~ 169 (432)
T d1qksa2 95 PTTVAEIKIGSEARSIETSKMEGWEDKYAIAGAYWP-----PQYVIMDGETLEPKKIQSTRGMTYDEQEYHPEPRVAAIL 169 (432)
T ss_dssp CCEEEEEECCSEEEEEEECCSTTCTTTEEEEEEEET-----TEEEEEETTTCCEEEEEECCEECTTTCCEESCCCEEEEE
T ss_pred ceEEEEEecCCCCCCeEEecccCCCCCEEEEEcCCC-----CeEEEEeCccccceeeeccCCccccceeccCCCceeEEE
Confidence 4333222211 10 00001112677554444432 3799999998766443 322111 0111122222
Q ss_pred EE-CCeEEEEEeecCCCCCCcEEEEEeccCCCCCceEEEEEeccCCCceeeEEEEecCCcEEEEEee-CCeEEEEeCCCC
Q 017748 255 AL-GGCLCLLCKFDDDDDDRPWDLWVMKEYGVNDSWTKLATLLNVGGGNVKPLVYSRSEDKVLLHAV-RGDLCWYDLERH 332 (366)
Q Consensus 255 ~~-~g~L~l~~~~~~~~~~~~l~iW~l~~~~~~~~W~~~~~i~~~~~~~~~~~~~~~~g~~i~~~~~-~~~~~~yd~~t~ 332 (366)
.. +|...++...... .+.+|...+ .+=.++.+++.... ..-+++.++|..++.... +..+...|.+++
T Consensus 170 ~s~dg~~~~vs~~~~~----~i~~~d~~~----~~~~~~~~i~~g~~--~~~~~~spdg~~~~va~~~~~~v~v~d~~~~ 239 (432)
T d1qksa2 170 ASHYRPEFIVNVKETG----KILLVDYTD----LNNLKTTEISAERF--LHDGGLDGSHRYFITAANARNKLVVIDTKEG 239 (432)
T ss_dssp ECSSSSEEEEEETTTT----EEEEEETTC----SSEEEEEEEECCSS--EEEEEECTTSCEEEEEEGGGTEEEEEETTTT
T ss_pred ECCCCCEEEEEEccCC----eEEEEEccC----CCcceEEEEcccCc--cccceECCCCCEEEEeccccceEEEeecccc
Confidence 22 4555544443322 555554443 12334556665544 566778888855666554 446999999999
Q ss_pred eEEEeeee
Q 017748 333 RVRSIVEI 340 (366)
Q Consensus 333 ~~~~v~~~ 340 (366)
+.......
T Consensus 240 ~~~~~~~~ 247 (432)
T d1qksa2 240 KLVAIEDT 247 (432)
T ss_dssp EEEEEEEC
T ss_pred eEEEEecc
Confidence 88766344
|
| >d1pbyb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Paracoccus denitrificans [TaxId: 266]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Quinohemoprotein amine dehydrogenase B chain domain: Quinohemoprotein amine dehydrogenase B chain species: Paracoccus denitrificans [TaxId: 266]
Probab=88.45 E-value=3.3 Score=33.07 Aligned_cols=101 Identities=15% Similarity=0.133 Sum_probs=58.2
Q ss_pred EEEEEECCCceeeeeCC-CCccCCCCceEEEEEECCeEEEEEeecCCCCCCcEEEEEeccCCCCCceEEEEEeccCCCce
Q 017748 224 IIIAFDLKSEEFYQVPL-PPIVGIEGYYILLEALGGCLCLLCKFDDDDDDRPWDLWVMKEYGVNDSWTKLATLLNVGGGN 302 (366)
Q Consensus 224 ~i~~fD~~~~~~~~i~l-P~~~~~~~~~~~l~~~~g~L~l~~~~~~~~~~~~l~iW~l~~~~~~~~W~~~~~i~~~~~~~ 302 (366)
.+..+|..+........ |... ....+........+... .. .+.+|-++. ...+.++.....
T Consensus 220 ~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~-~~-----~i~v~d~~~------~~~~~~~~~~~~-- 281 (337)
T d1pbyb_ 220 GLLTMDLETGEMAMREVRIMDV----FYFSTAVNPAKTRAFGA-YN-----VLESFDLEK------NASIKRVPLPHS-- 281 (337)
T ss_dssp EEEEEETTTCCEEEEEEEECSS----CEEEEEECTTSSEEEEE-ES-----EEEEEETTT------TEEEEEEECSSC--
T ss_pred cEEEEEcCCCcEEEEEecCCCc----ceEEEEecccceEEEEc-cc-----cEEEEECCC------CcEEEEEcCCCC--
Confidence 56777777666544422 2221 22233333322222222 22 788886554 444555554432
Q ss_pred eeEEEEecCCcEEEEEeeCCeEEEEeCCCCeEEEeeeecC
Q 017748 303 VKPLVYSRSEDKVLLHAVRGDLCWYDLERHRVRSIVEIDD 342 (366)
Q Consensus 303 ~~~~~~~~~g~~i~~~~~~~~~~~yd~~t~~~~~v~~~~~ 342 (366)
..-+++.++|..+++...++.+.+||.++.+......+.|
T Consensus 282 ~~~~~~s~dG~~l~v~~~~~~i~v~D~~t~~~v~~i~~~g 321 (337)
T d1pbyb_ 282 YYSVNVSTDGSTVWLGGALGDLAAYDAETLEKKGQVDLPG 321 (337)
T ss_dssp CCEEEECTTSCEEEEESBSSEEEEEETTTCCEEEEEECGG
T ss_pred EEEEEECCCCCEEEEEeCCCcEEEEECCCCcEEEEEECCC
Confidence 4457788899888888888889999999876543327765
|
| >d1flga_ b.70.1.1 (A:) Ethanol dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: Quinoprotein alcohol dehydrogenase-like family: Quinoprotein alcohol dehydrogenase-like domain: Ethanol dehydrogenase species: Pseudomonas aeruginosa [TaxId: 287]
Probab=87.90 E-value=4.7 Score=36.14 Aligned_cols=123 Identities=14% Similarity=0.072 Sum_probs=66.6
Q ss_pred CcceEECCcEEEEEeeCCCCCCCcEEEEEECCCc--eeeee-CCCCccC--CCCceEEEEEECCeEEEEEeecCCCCCCc
Q 017748 200 TCSVFVNGALHWTAALNQDADRNDIIIAFDLKSE--EFYQV-PLPPIVG--IEGYYILLEALGGCLCLLCKFDDDDDDRP 274 (366)
Q Consensus 200 ~~~v~~~G~lYw~~~~~~~~~~~~~i~~fD~~~~--~~~~i-~lP~~~~--~~~~~~~l~~~~g~L~l~~~~~~~~~~~~ 274 (366)
..+++++|++|..+..+ .|+++|.++. .|+.- +.|.... ......-++..++++++... .
T Consensus 62 stPiv~~g~vy~~t~~~-------~v~AlDa~TG~~lW~~~~~~~~~~~~~~~~~~rg~a~~~~~i~~~t~--------~ 126 (582)
T d1flga_ 62 SQAIVSDGVIYVTASYS-------RLFALDAKTGKRLWTYNHRLPDDIRPCCDVVNRGAAIYGDKVFFGTL--------D 126 (582)
T ss_dssp CCCEEETTEEEEEETTT-------EEEEEESSSCCEEEEEECCCCTTCCCSSCSCCCCCEEETTEEEEEET--------T
T ss_pred cCCEEECCEEEEeCCCC-------eEEEEeCCCCCeEEEEcCCCCCccccccccccCCceEeCCceEEecC--------C
Confidence 45899999999876554 8999999864 56543 4444331 11112234556777776443 2
Q ss_pred EEEEEeccCCCCCceEEEEE-eccCCCceeeEEEEec--CCcEEEEEee-------CCeEEEEeCCCCeEEEe
Q 017748 275 WDLWVMKEYGVNDSWTKLAT-LLNVGGGNVKPLVYSR--SEDKVLLHAV-------RGDLCWYDLERHRVRSI 337 (366)
Q Consensus 275 l~iW~l~~~~~~~~W~~~~~-i~~~~~~~~~~~~~~~--~g~~i~~~~~-------~~~~~~yd~~t~~~~~v 337 (366)
-.+..|+....+..|..... -.........|..+.. .++.+++... .+.++++|.+|++..+.
T Consensus 127 ~~l~alda~tG~~~W~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~i~g~~~~~~~~~g~v~a~d~~tG~~~W~ 199 (582)
T d1flga_ 127 ASVVALNKNTGKVVWKKKFADHGAGYTMTGAPTIVKDGKTGKVLLIHGSSGDEFGVVGRLFARDPDTGEEIWM 199 (582)
T ss_dssp TEEEEEESSSCCEEEEEECSCGGGTCBCCSCCEEEECTTTCCEEEEECCBCGGGCCBCEEEEECTTTCCEEEE
T ss_pred CeEEEecccccceeeeecccCCCccceeecCceEecCCcEeEEEEEeCccccccccccceEEecCCCCcEEEE
Confidence 34556665434455654321 1110000123333321 1223333321 23599999999998775
|
| >d2ovrb2 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: F-box/WD repeat-containing protein 7, FBXW7 species: Human (Homo sapiens) [TaxId: 9606]
Probab=86.04 E-value=6.7 Score=30.93 Aligned_cols=96 Identities=14% Similarity=0.109 Sum_probs=53.4
Q ss_pred EEEEEECCCceeeee-CCCCccCCCCceEEEEEECCeEEEEEeecCCCCCCcEEEEEeccCCCCCceEEEEEeccCCCce
Q 017748 224 IIIAFDLKSEEFYQV-PLPPIVGIEGYYILLEALGGCLCLLCKFDDDDDDRPWDLWVMKEYGVNDSWTKLATLLNVGGGN 302 (366)
Q Consensus 224 ~i~~fD~~~~~~~~i-~lP~~~~~~~~~~~l~~~~g~L~l~~~~~~~~~~~~l~iW~l~~~~~~~~W~~~~~i~~~~~~~ 302 (366)
.|..+|+.+.+.... ..... ....+ ..++.+.+.+..+. .+.+|.+.... ....+.......
T Consensus 198 ~i~~~d~~~~~~~~~~~~~~~-----~v~~~-~~~~~~l~s~s~d~-----~i~iwd~~~~~------~~~~~~~~~~~~ 260 (342)
T d2ovrb2 198 SIRVWDVETGNCIHTLTGHQS-----LTSGM-ELKDNILVSGNADS-----TVKIWDIKTGQ------CLQTLQGPNKHQ 260 (342)
T ss_dssp CEEEEETTTCCEEEEECCCCS-----CEEEE-EEETTEEEEEETTS-----CEEEEETTTCC------EEEEECSTTSCS
T ss_pred eEEEeecccceeeeEeccccc-----ceeEE-ecCCCEEEEEcCCC-----EEEEEeccccc------ccccccccceee
Confidence 588888887654332 22221 12223 33455545444444 89999877631 122222111111
Q ss_pred eeEEEEecCCcEEEEEeeCCeEEEEeCCCCeEEE
Q 017748 303 VKPLVYSRSEDKVLLHAVRGDLCWYDLERHRVRS 336 (366)
Q Consensus 303 ~~~~~~~~~g~~i~~~~~~~~~~~yd~~t~~~~~ 336 (366)
....++..+++.++....++.+..||+++++..+
T Consensus 261 ~~~~~~~~~~~~~~s~s~Dg~i~iwd~~tg~~i~ 294 (342)
T d2ovrb2 261 SAVTCLQFNKNFVITSSDDGTVKLWDLKTGEFIR 294 (342)
T ss_dssp SCEEEEEECSSEEEEEETTSEEEEEETTTCCEEE
T ss_pred eceeecccCCCeeEEEcCCCEEEEEECCCCCEEE
Confidence 3445555566567667778889999999987643
|
| >d1nexb2 b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Cdc4 propeller domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=85.77 E-value=6 Score=31.43 Aligned_cols=94 Identities=14% Similarity=0.181 Sum_probs=52.5
Q ss_pred EEEEEECCCceeeee-CCCCccCCCCceEEEEEECCeEEEEEeecCCCCCCcEEEEEeccCCCCCceEEEEEeccCCCce
Q 017748 224 IIIAFDLKSEEFYQV-PLPPIVGIEGYYILLEALGGCLCLLCKFDDDDDDRPWDLWVMKEYGVNDSWTKLATLLNVGGGN 302 (366)
Q Consensus 224 ~i~~fD~~~~~~~~i-~lP~~~~~~~~~~~l~~~~g~L~l~~~~~~~~~~~~l~iW~l~~~~~~~~W~~~~~i~~~~~~~ 302 (366)
.|..+|..+...... ..... .......+++..+....++ .+.+|-+++.. +.........
T Consensus 224 ~i~i~d~~~~~~~~~~~~h~~------~v~~~~~~~~~l~~~~~dg-----~i~iwd~~~~~------~~~~~~~~~~-- 284 (355)
T d1nexb2 224 TIRIWDLENGELMYTLQGHTA------LVGLLRLSDKFLVSAAADG-----SIRGWDANDYS------RKFSYHHTNL-- 284 (355)
T ss_dssp CEEEEETTTCCEEEEECCCSS------CCCEEEECSSEEEEECTTS-----EEEEEETTTCC------EEEEEECTTC--
T ss_pred eEEeeeccccccccccccccc------cccccccccceeeeeeccc-----ccccccccccc------eecccccCCc--
Confidence 577888887654332 22221 1122334566555555444 89999876531 2222222221
Q ss_pred eeEEEEecCCcEEEEEeeCCeEEEEeCCCCeEEEe
Q 017748 303 VKPLVYSRSEDKVLLHAVRGDLCWYDLERHRVRSI 337 (366)
Q Consensus 303 ~~~~~~~~~g~~i~~~~~~~~~~~yd~~t~~~~~v 337 (366)
.....+..++ .++....++.+..||+++++.-..
T Consensus 285 ~~~~~~~~~~-~~l~~g~d~~i~vwd~~tg~~~~~ 318 (355)
T d1nexb2 285 SAITTFYVSD-NILVSGSENQFNIYNLRSGKLVHA 318 (355)
T ss_dssp CCCCEEEECS-SEEEEEETTEEEEEETTTCCBCCS
T ss_pred eEEEEEcCCC-CEEEEEeCCEEEEEECCCCCEEEE
Confidence 2333444455 677777788899999999886543
|
| >d1kb0a2 b.70.1.1 (A:1-573) Quinoprotein alcohol dehydrogenase, N-terminal domain {Comamonas testosteroni [TaxId: 285]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: Quinoprotein alcohol dehydrogenase-like family: Quinoprotein alcohol dehydrogenase-like domain: Quinoprotein alcohol dehydrogenase, N-terminal domain species: Comamonas testosteroni [TaxId: 285]
Probab=85.68 E-value=1.7 Score=39.14 Aligned_cols=122 Identities=15% Similarity=0.077 Sum_probs=62.1
Q ss_pred CcceEECCcEEEEEeeCCCCCCCcEEEEEECCCceeeee---CCCCcc----CCCCceEEEEEECCeEEEEEeecCCCCC
Q 017748 200 TCSVFVNGALHWTAALNQDADRNDIIIAFDLKSEEFYQV---PLPPIV----GIEGYYILLEALGGCLCLLCKFDDDDDD 272 (366)
Q Consensus 200 ~~~v~~~G~lYw~~~~~~~~~~~~~i~~fD~~~~~~~~i---~lP~~~----~~~~~~~~l~~~~g~L~l~~~~~~~~~~ 272 (366)
..+++++|++|..+..+ .|+++|.++.+-... ..+... .......-+...+|++++...
T Consensus 71 stPiv~~g~vyv~t~~~-------~v~AlDa~TG~~~W~~~~~~~~~~~~~~~~~~~~~g~~~~~~~v~~~t~------- 136 (573)
T d1kb0a2 71 ATPVVVDGIMYVSASWS-------VVHAIDTRTGNRIWTYDPQIDRSTGFKGCCDVVNRGVALWKGKVYVGAW------- 136 (573)
T ss_dssp CCCEEETTEEEEECGGG-------CEEEEETTTTEEEEEECCCCCGGGGGGSSSCSCCCCCEEETTEEEEECT-------
T ss_pred ECCEEECCEEEEECCCC-------eEEEEeCCCCCeEEEeCCCCCcccccccccccccccceEECCcEEEEec-------
Confidence 55799999999876544 699999998644332 222211 001112234445666665432
Q ss_pred CcEEEEEeccCCCCCceEEEEEecc-CCCce-eeEEEEecCCcEEEEEee------CCeEEEEeCCCCeEEEeee
Q 017748 273 RPWDLWVMKEYGVNDSWTKLATLLN-VGGGN-VKPLVYSRSEDKVLLHAV------RGDLCWYDLERHRVRSIVE 339 (366)
Q Consensus 273 ~~l~iW~l~~~~~~~~W~~~~~i~~-~~~~~-~~~~~~~~~g~~i~~~~~------~~~~~~yd~~t~~~~~v~~ 339 (366)
.-.+..|+....+..|+....-.. ..... ..|+.+ ++ .|++... .+.+.+||.+|++..+...
T Consensus 137 -~g~l~alda~tG~~~W~~~~~~~~~~~~~~~~~p~v~--~~-~vivg~~~~~~~~~G~v~a~D~~TG~~~W~~~ 207 (573)
T d1kb0a2 137 -DGRLIALDAATGKEVWHQNTFEGQKGSLTITGAPRVF--KG-KVIIGNGGAEYGVRGYITAYDAETGERKWRWF 207 (573)
T ss_dssp -TSEEEEEETTTCCEEEEEETTTTCCSSCBCCSCCEEE--TT-EEEECCBCTTTCCBCEEEEEETTTCCEEEEEE
T ss_pred -ccceeeeccccccceecccCccCCcceEEeecceEEE--ec-cEEEeeccccccccceEEEEecCCccceeeee
Confidence 123444543323344543210000 00011 223332 23 5665432 2359999999999776633
|
| >d2ghsa1 b.68.6.1 (A:20-314) Regucalcin {Agrobacterium tumefaciens [TaxId: 358]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Calcium-dependent phosphotriesterase family: SGL-like domain: Regucalcin species: Agrobacterium tumefaciens [TaxId: 358]
Probab=85.03 E-value=8 Score=30.96 Aligned_cols=33 Identities=21% Similarity=0.263 Sum_probs=27.2
Q ss_pred CCcEEEEEeeCCCCCCCcEEEEEECCCceeeeeCCCCcc
Q 017748 206 NGALHWTAALNQDADRNDIIIAFDLKSEEFYQVPLPPIV 244 (366)
Q Consensus 206 ~G~lYw~~~~~~~~~~~~~i~~fD~~~~~~~~i~lP~~~ 244 (366)
+|.+||+-... ..|..+|+++++.+..++|...
T Consensus 29 ~~~l~wvDi~~------~~I~r~d~~~g~~~~~~~~~~~ 61 (295)
T d2ghsa1 29 SGTAWWFNILE------RELHELHLASGRKTVHALPFMG 61 (295)
T ss_dssp TTEEEEEEGGG------TEEEEEETTTTEEEEEECSSCE
T ss_pred CCEEEEEECCC------CEEEEEECCCCeEEEEECCCCc
Confidence 68999987554 3899999999998888888754
|
| >d2ghsa1 b.68.6.1 (A:20-314) Regucalcin {Agrobacterium tumefaciens [TaxId: 358]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Calcium-dependent phosphotriesterase family: SGL-like domain: Regucalcin species: Agrobacterium tumefaciens [TaxId: 358]
Probab=84.41 E-value=8.6 Score=30.76 Aligned_cols=203 Identities=9% Similarity=-0.019 Sum_probs=98.6
Q ss_pred eeeceeEEeec-CCccEEEEEeccccceeecCCcCCCCCCCCcceEEEeeecCCCCeEEEEEEEEcCCCCccEEEEEEec
Q 017748 104 GSCNGLLALED-SRRNIMLLLNPLTKRHRVLPTFYRDLSRCVPSLEGFGFDVGSGDFKLVKILAFGKPMNYTEVAVFSLR 182 (366)
Q Consensus 104 ~s~~Gll~~~~-~~~~~~~V~NP~t~~~~~LP~~~~~~~~~~~~~~~lg~d~~~~~ykvv~~~~~~~~~~~~~~~vyss~ 182 (366)
+..+|-|...+ ...+++ -+||.|++....+.+. ...+++.++. .--+++ . ...+..|+..
T Consensus 26 d~~~~~l~wvDi~~~~I~-r~d~~~g~~~~~~~~~--------~~~~i~~~~d--g~l~va-~-------~~gl~~~d~~ 86 (295)
T d2ghsa1 26 DPASGTAWWFNILERELH-ELHLASGRKTVHALPF--------MGSALAKISD--SKQLIA-S-------DDGLFLRDTA 86 (295)
T ss_dssp ETTTTEEEEEEGGGTEEE-EEETTTTEEEEEECSS--------CEEEEEEEET--TEEEEE-E-------TTEEEEEETT
T ss_pred ECCCCEEEEEECCCCEEE-EEECCCCeEEEEECCC--------CcEEEEEecC--CCEEEE-E-------eCccEEeecc
Confidence 33345444443 456788 8999999876654332 1224444443 222332 2 3468899999
Q ss_pred CCcEEEccCCCccee--cCCcc-eEECCcEEEEEeeCCCCCCCcEEEEEECCCceeeeeCCCCccCCCCceEEEEEE--C
Q 017748 183 VNSWRRIQDFPYFWV--TGTCS-VFVNGALHWTAALNQDADRNDIIIAFDLKSEEFYQVPLPPIVGIEGYYILLEAL--G 257 (366)
Q Consensus 183 t~~W~~~~~~~~~~~--~~~~~-v~~~G~lYw~~~~~~~~~~~~~i~~fD~~~~~~~~i~lP~~~~~~~~~~~l~~~--~ 257 (366)
++..+.+...+.... ..... +--+|.+|+-............+..++ ..+...+.-.... .. -++.. +
T Consensus 87 tg~~~~l~~~~~~~~~~~~nd~~vd~~G~iw~~~~~~~~~~~~g~l~~~~--~g~~~~~~~~~~~----~N-g~~~s~d~ 159 (295)
T d2ghsa1 87 TGVLTLHAELESDLPGNRSNDGRMHPSGALWIGTMGRKAETGAGSIYHVA--KGKVTKLFADISI----PN-SICFSPDG 159 (295)
T ss_dssp TCCEEEEECSSTTCTTEEEEEEEECTTSCEEEEEEETTCCTTCEEEEEEE--TTEEEEEEEEESS----EE-EEEECTTS
T ss_pred cceeeEEeeeecCCCcccceeeEECCCCCEEEEeccccccccceeEeeec--CCcEEEEeeccCC----cc-eeeecCCC
Confidence 999988754432221 11212 223577665544332222223444443 3444433211111 11 12222 2
Q ss_pred CeEEEEEeecCCCCCCcEEEEEeccCCCCCce----EEEEEeccCCCceeeEEEEecCCcEEEEEee-CCeEEEEeCCCC
Q 017748 258 GCLCLLCKFDDDDDDRPWDLWVMKEYGVNDSW----TKLATLLNVGGGNVKPLVYSRSEDKVLLHAV-RGDLCWYDLERH 332 (366)
Q Consensus 258 g~L~l~~~~~~~~~~~~l~iW~l~~~~~~~~W----~~~~~i~~~~~~~~~~~~~~~~g~~i~~~~~-~~~~~~yd~~t~ 332 (366)
..|+++..... . ||..+-+...... ......+... +...-+++..+| .|++... +++|..||++.+
T Consensus 160 ~~l~~~dt~~~-----~--I~~~~~d~~~~~~~~~~~~~~~~~~~~-g~pdG~~vD~~G-nlWva~~~~g~V~~~dp~G~ 230 (295)
T d2ghsa1 160 TTGYFVDTKVN-----R--LMRVPLDARTGLPTGKAEVFIDSTGIK-GGMDGSVCDAEG-HIWNARWGEGAVDRYDTDGN 230 (295)
T ss_dssp CEEEEEETTTC-----E--EEEEEBCTTTCCBSSCCEEEEECTTSS-SEEEEEEECTTS-CEEEEEETTTEEEEECTTCC
T ss_pred ceEEEeecccc-----e--eeEeeecccccccccceEEEeccCccc-ccccceEEcCCC-CEEeeeeCCCceEEecCCCc
Confidence 34555544322 3 4444322111111 1112222111 112223444555 7777754 567999999999
Q ss_pred eEEEeeeecC
Q 017748 333 RVRSIVEIDD 342 (366)
Q Consensus 333 ~~~~v~~~~~ 342 (366)
..+++ +++.
T Consensus 231 ~~~~i-~lP~ 239 (295)
T d2ghsa1 231 HIARY-EVPG 239 (295)
T ss_dssp EEEEE-ECSC
T ss_pred EeeEe-cCCC
Confidence 99888 8764
|
| >d1jmxb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Pseudomonas putida [TaxId: 303]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Quinohemoprotein amine dehydrogenase B chain domain: Quinohemoprotein amine dehydrogenase B chain species: Pseudomonas putida [TaxId: 303]
Probab=83.54 E-value=5.3 Score=31.85 Aligned_cols=61 Identities=10% Similarity=0.098 Sum_probs=40.7
Q ss_pred cEEEEEeccCCCCCceEEEEEeccCCCceeeEEEEecCCcEEEEEeeCCeEEEEeCCCCeEEEeeeecC
Q 017748 274 PWDLWVMKEYGVNDSWTKLATLLNVGGGNVKPLVYSRSEDKVLLHAVRGDLCWYDLERHRVRSIVEIDD 342 (366)
Q Consensus 274 ~l~iW~l~~~~~~~~W~~~~~i~~~~~~~~~~~~~~~~g~~i~~~~~~~~~~~yd~~t~~~~~v~~~~~ 342 (366)
.+.+|-+.. ...+..++.... ..-+++..+|..|+....++.+.+||++|.+...-.++.+
T Consensus 273 ~v~v~d~~~------~~~~~~~~~~~~--~~~va~s~DG~~l~v~~~d~~v~v~D~~t~~~i~~i~~p~ 333 (346)
T d1jmxb_ 273 RLAKYDLKQ------RKLIKAANLDHT--YYCVAFDKKGDKLYLGGTFNDLAVFNPDTLEKVKNIKLPG 333 (346)
T ss_dssp EEEEEETTT------TEEEEEEECSSC--CCEEEECSSSSCEEEESBSSEEEEEETTTTEEEEEEECSS
T ss_pred eEEEEECCC------CcEEEEEcCCCC--EEEEEEcCCCCEEEEEeCCCcEEEEECccCCEEEEEECCC
Confidence 667765443 233444443322 4457888899888888778889999999987654337765
|
| >d2ad6a1 b.70.1.1 (A:1-571) Methanol dehydrogenase, heavy chain {Methylophilus methylotrophus, w3a1 [TaxId: 17]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: Quinoprotein alcohol dehydrogenase-like family: Quinoprotein alcohol dehydrogenase-like domain: Methanol dehydrogenase, heavy chain species: Methylophilus methylotrophus, w3a1 [TaxId: 17]
Probab=82.47 E-value=4.4 Score=36.31 Aligned_cols=123 Identities=11% Similarity=0.030 Sum_probs=66.7
Q ss_pred CcceEECCcEEEEEeeCCCCCCCcEEEEEECC-C--ceeeee-CCCCccC----CCCceEEEEEECCeEEEEEeecCCCC
Q 017748 200 TCSVFVNGALHWTAALNQDADRNDIIIAFDLK-S--EEFYQV-PLPPIVG----IEGYYILLEALGGCLCLLCKFDDDDD 271 (366)
Q Consensus 200 ~~~v~~~G~lYw~~~~~~~~~~~~~i~~fD~~-~--~~~~~i-~lP~~~~----~~~~~~~l~~~~g~L~l~~~~~~~~~ 271 (366)
..+++++|++|..+... ..++++|.+ + +.|+.- +.+.... ......-++..+|+|++...
T Consensus 56 ~tP~v~~g~vyv~t~~~------~~v~Alda~~tG~~~W~~~~~~~~~~~~~~~~~~~~rg~a~~~~~i~~~~~------ 123 (571)
T d2ad6a1 56 GAPLVIGDMMYVHSAFP------NNTYALNLNDPGKIVWQHKPKQDASTKAVMCCDVVDRGLAYGAGQIVKKQA------ 123 (571)
T ss_dssp SCCEEETTEEEEECSTT------TCEEEEETTCTTSEEEEECCCCCGGGGGGCTTCSCCCCCEEETTEEEEECT------
T ss_pred cCCEEECCEEEEecCCC------CeEEEEeCCCCCceEEEecCCCCcccccccccCcCCCcceeeCCeEEEEeC------
Confidence 45899999999987532 269999974 3 466542 2222210 11112234566788776543
Q ss_pred CCcEEEEEeccCCCCCceEEEE-EeccCCCceeeEEEEecCCcEEEEEee------CCeEEEEeCCCCeEEEeee
Q 017748 272 DRPWDLWVMKEYGVNDSWTKLA-TLLNVGGGNVKPLVYSRSEDKVLLHAV------RGDLCWYDLERHRVRSIVE 339 (366)
Q Consensus 272 ~~~l~iW~l~~~~~~~~W~~~~-~i~~~~~~~~~~~~~~~~g~~i~~~~~------~~~~~~yd~~t~~~~~v~~ 339 (366)
.=.+..|+....+..|.... ...... ....+-.+. ++ .|++... .+.+.+||.+|++..+.+.
T Consensus 124 --~g~l~alda~tG~~~w~~~~~~~~~~~-~~t~~p~v~-~~-~vivg~~~~~~~~~G~v~a~D~~TG~~~W~~~ 193 (571)
T d2ad6a1 124 --NGHLLALDAKTGKINWEVEVCDPKVGS-TLTQAPFVA-KD-TVLMGCSGAELGVRGAVNAFDLKTGELKWRAF 193 (571)
T ss_dssp --TSEEEEEETTTCCEEEEEECCCGGGTC-BCCSCCEEE-TT-EEEEECBCGGGTCCCEEEEEETTTCCEEEEEE
T ss_pred --CCcEEeeehhhhhhhcccccccccccc-ceeecCeEe-CC-eEEEeeccccccccCcEEEEECCCCcEEEEEe
Confidence 12355666544444565421 111110 112222233 23 6766643 3469999999999888644
|
| >d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Arp2/3 complex 41 kDa subunit ARPC1 species: Cow (Bos taurus) [TaxId: 9913]
Probab=82.12 E-value=12 Score=30.62 Aligned_cols=194 Identities=10% Similarity=0.082 Sum_probs=92.9
Q ss_pred CCccEEEEEeccccceeecCCcCCCCCCCCcceEEEeeecCCCCeEEEEEEEEcCCCCccEEEEEEecCCcEEEccCCCc
Q 017748 115 SRRNIMLLLNPLTKRHRVLPTFYRDLSRCVPSLEGFGFDVGSGDFKLVKILAFGKPMNYTEVAVFSLRVNSWRRIQDFPY 194 (366)
Q Consensus 115 ~~~~~~~V~NP~t~~~~~LP~~~~~~~~~~~~~~~lg~d~~~~~ykvv~~~~~~~~~~~~~~~vyss~t~~W~~~~~~~~ 194 (366)
.+..+. |||..++++..+.....+ ......+.+.|.. .|-+ .... ...+.+++..++.|+.......
T Consensus 27 ~~~~i~-iw~~~~~~~~~~~~l~gH----~~~V~~l~fsp~~-~~l~-s~s~------D~~i~vWd~~~~~~~~~~~~~~ 93 (371)
T d1k8kc_ 27 NNHEVH-IYEKSGNKWVQVHELKEH----NGQVTGVDWAPDS-NRIV-TCGT------DRNAYVWTLKGRTWKPTLVILR 93 (371)
T ss_dssp SSSEEE-EEEEETTEEEEEEEEECC----SSCEEEEEEETTT-TEEE-EEET------TSCEEEEEEETTEEEEEEECCC
T ss_pred CCCEEE-EEECCCCCEEEEEEecCC----CCCEEEEEECCCC-CEEE-EEEC------CCeEEEEeeccccccccccccc
Confidence 344566 888887766554433222 1234566777743 4432 2221 4468999999998875532221
Q ss_pred ceecCCcceEE--CCcEEEEEeeCCCCCCCcEEEEEECCCceeeeeCCCCccCCCCceEEEEEE-CCeEEEEEeecCCCC
Q 017748 195 FWVTGTCSVFV--NGALHWTAALNQDADRNDIIIAFDLKSEEFYQVPLPPIVGIEGYYILLEAL-GGCLCLLCKFDDDDD 271 (366)
Q Consensus 195 ~~~~~~~~v~~--~G~lYw~~~~~~~~~~~~~i~~fD~~~~~~~~i~lP~~~~~~~~~~~l~~~-~g~L~l~~~~~~~~~ 271 (366)
... .-..+.. +|.....+... + ...+..++..+..+......... ......+... +|+..+.+..+.
T Consensus 94 ~~~-~v~~i~~~p~~~~l~~~s~d-~---~i~i~~~~~~~~~~~~~~~~~~~--~~~v~~v~~~p~~~~l~s~s~D~--- 163 (371)
T d1k8kc_ 94 INR-AARCVRWAPNEKKFAVGSGS-R---VISICYFEQENDWWVCKHIKKPI--RSTVLSLDWHPNSVLLAAGSCDF--- 163 (371)
T ss_dssp CSS-CEEEEEECTTSSEEEEEETT-S---SEEEEEEETTTTEEEEEEECTTC--CSCEEEEEECTTSSEEEEEETTS---
T ss_pred ccc-cccccccccccccceeeccc-C---cceeeeeeccccccccccccccc--ccccccccccccccceeccccCc---
Confidence 100 0001111 34433333322 1 12455555555444333211111 0112223322 466555554444
Q ss_pred CCcEEEEEeccCCC-----CCceEEE-------EEeccCCCceeeEEEEecCCcEEEEEeeCCeEEEEeCCCCeE
Q 017748 272 DRPWDLWVMKEYGV-----NDSWTKL-------ATLLNVGGGNVKPLVYSRSEDKVLLHAVRGDLCWYDLERHRV 334 (366)
Q Consensus 272 ~~~l~iW~l~~~~~-----~~~W~~~-------~~i~~~~~~~~~~~~~~~~g~~i~~~~~~~~~~~yd~~t~~~ 334 (366)
.+.+|.+..... ...|... ..... ..+...-+++..+|..|+....++.+..||+++++-
T Consensus 164 --~v~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~v~~~~~s~~g~~l~s~~~d~~i~iwd~~~~~~ 235 (371)
T d1k8kc_ 164 --KCRIFSAYIKEVEERPAPTPWGSKMPFGELMFESSS-SCGWVHGVCFSANGSRVAWVSHDSTVCLADADKKMA 235 (371)
T ss_dssp --CEEEEECCCTTTSCCCCCBTTBSCCCTTCEEEECCC-CSSCEEEEEECSSSSEEEEEETTTEEEEEEGGGTTE
T ss_pred --EEEEEeeccCccccccccccccccccceeeeeeccC-ccCcEEEEEeecccccccccccCCcceEEeeecccc
Confidence 789997654211 1112111 11100 001133456677886777777778899999987764
|
| >d1k32a3 b.69.9.1 (A:320-679) Tricorn protease domain 2 {Archaeon Thermoplasma acidophilum [TaxId: 2303]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Tricorn protease domain 2 family: Tricorn protease domain 2 domain: Tricorn protease domain 2 species: Archaeon Thermoplasma acidophilum [TaxId: 2303]
Probab=82.03 E-value=7.5 Score=31.15 Aligned_cols=99 Identities=13% Similarity=0.094 Sum_probs=59.0
Q ss_pred EEEEEECCCceeeeeCCCCccCCCCceEEEEEE-CCeEEEEEeecCCCCCCcEEEEEeccCCCCCceEEEEEe-ccCCCc
Q 017748 224 IIIAFDLKSEEFYQVPLPPIVGIEGYYILLEAL-GGCLCLLCKFDDDDDDRPWDLWVMKEYGVNDSWTKLATL-LNVGGG 301 (366)
Q Consensus 224 ~i~~fD~~~~~~~~i~lP~~~~~~~~~~~l~~~-~g~L~l~~~~~~~~~~~~l~iW~l~~~~~~~~W~~~~~i-~~~~~~ 301 (366)
.|..+|.+......+ +... ....+.-. +|+..++...+.. ..+.+|-++.. + ...+ ....
T Consensus 25 ~v~v~d~~~~~~~~~--~~~~----~v~~~~~spDg~~l~~~~~~~g---~~v~v~d~~~~----~---~~~~~~~~~-- 86 (360)
T d1k32a3 25 QAFIQDVSGTYVLKV--PEPL----RIRYVRRGGDTKVAFIHGTREG---DFLGIYDYRTG----K---AEKFEENLG-- 86 (360)
T ss_dssp EEEEECTTSSBEEEC--SCCS----CEEEEEECSSSEEEEEEEETTE---EEEEEEETTTC----C---EEECCCCCC--
T ss_pred eEEEEECCCCcEEEc--cCCC----CEEEEEECCCCCEEEEEEcCCC---CEEEEEECCCC----c---EEEeeCCCc--
Confidence 688889887766554 3221 12223333 6776665554431 15667755541 1 1122 1111
Q ss_pred eeeEEEEecCCcEEEEEeeCCeEEEEeCCCCeEEEeeee
Q 017748 302 NVKPLVYSRSEDKVLLHAVRGDLCWYDLERHRVRSIVEI 340 (366)
Q Consensus 302 ~~~~~~~~~~g~~i~~~~~~~~~~~yd~~t~~~~~v~~~ 340 (366)
....+++.++|..|+....+..+..+|.++++...+...
T Consensus 87 ~v~~~~~spdg~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 125 (360)
T d1k32a3 87 NVFAMGVDRNGKFAVVANDRFEIMTVDLETGKPTVIERS 125 (360)
T ss_dssp SEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEEEC
T ss_pred eEEeeeecccccccceeccccccccccccccceeeeeec
Confidence 255677888887788888888899999999998766333
|