Citrus Sinensis ID: 017754

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360------
Protein Sequence
MLAVLLLEDLEVANQNVLTVLAVGLIIIILLPVTIPVVLVFFTEPPPPVEETLLAETNKGEASKSEDYQEEVILSEVEDEKPPEVDSLPASERQKRIAHLQAKLFQAAAEGAVRVKRRKGPRRGEDFTLPQALMKADFLLLFFSLVLASGSGLTVIDNLGQICQSLGYADTSIYVSMISIWNFLGRVGGGYFSEAIVRKFAYPRPVAMAVAQVVMAFALLYYAIGWPGEIYVTTVLVGLSYGAHWAIVPAAASELFGLKSFGALYNFLTLASPAGSLIFSGVIASGIYDYYAEKQAGLLWKYNGNMLPVSFRDQETPTCLGSICYSITCGIMAGLCIIAMVMSLIVVHRTKSVYAQLYGNLNRSNR
Secondary Structure (PSIPRED)
cEEEEEEcccccccHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccHHHHHccccccccccccHHHHHHHccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccHHHHHHcHHHHHHHHHHHHHHHHHHHHHHcHHHHHHHHcccccHHHHHHHHHHHHHHHHcccccHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHccccccHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccc
Secondary Structure Prediction (SSPRO)
cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccHHHccccccccccccccccccccEccccccccccccccccccHHHccccHHHHHHHHHHHcccEEEEcccccccccccHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHccccccHEHHHHHHHHHHHHHHHHcHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHcccccEEEEEEEHHHHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHccccccccHHHcccccccccccEEccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccc
Coil and Loop (DISEMBL)
MLAVLLLEDLEVANQNVLTVLAVGLIIIILLPVTIPVVLVffteppppveeTLLAetnkgeasksedyqeEVILsevedekppevdslpaSERQKRIAHLQAKLFQAAAEGAVRVkrrkgprrgedftlpqALMKADFLLLFFSLVLasgsgltvIDNLGQICQslgyadtsIYVSMISIWNFLgrvgggyfSEAIVRKFAYPRPVAMAVAQVVMAFALLYYAIGWPGEIYVTTVLVGLSYGAHWAIVPAAASELFGLKSFGALYNFltlaspagsliFSGVIASGIYDYYAEKQAGLLWkyngnmlpvsfrdqetptclgsicySITCGIMAGLCIIAMVMSLIVVHRTKSVYAQLYgnlnrsnr
Flexible Loop (DISEMBL)
MLAVLLLEDLEVANQNVLTVLAVGLIIIILLPVTIPVVLVFFTEPPPPVEETLLAetnkgeasksedyQEEVIlsevedekppevDSLPASERQKRIAHLQAKLFQAaaegavrvkrrkgprrgedftlPQALMKADFLLLFFSLVLASGSGLTVIDNLGQICQSLGYADTSIYVSMISIWNFLGRVGGGYFSEAIVRKFAYPRPVAMAVAQVVMAFALLYYAIGWPGEIYVTTVLVGLSYGAHWAIVPAAASELFGLKSFGALYNFLTLASPAGSLIFSGVIASGIYDYYAEKQAGLLWKYNGNMLPVSFRDQETPTCLGSICYSITCGIMAGLCIIAMVMSLIVVHRTKSVYAqlygnlnrsnr
Low Complexity Region (SEG)
MlavllledlevaNQNvltvlavgliiiillpvtipvvlvffteppppveetllAETNKGEASKSEDYQEEVILSEVEDEKPPEVDSLPASERQKRIAHLQAKLFQAAAEGAvrvkrrkgprrgEDFTLPQALMKADflllffslvlasgsglTVIDNLGQICQSLGYADTSIYVSMISIWNFLGRVGGGYFSEAIVRKFAYPRPvamavaqvvmaFALLYYAIGWPGEIYVTTVLVGLSYGAHWAIVPAAASELFGLKSFGALYNFLTLASPAGSLIFSGVIASGIYDYYAEKQAGLLWKYNGNMLPVSFRDQETPTCLGSICYSITCGIMAGLCIIAMVMSLIVVHRTKSVYAQLYGNLNRSNR
Disordered region (IsUnstruct)
**AVLLLEDLEVANQNVLTVLAVGLIIIILLPVTIPVVLVFFT************************************************************LF*********************FTLPQALMKADFLLLFFSLVLASGSGLTVIDNLGQICQSLGYADTSIYVSMISIWNFLGRVGGGYFSEAIVRKFAYPRPVAMAVAQVVMAFALLYYAIGWPGEIYVTTVLVGLSYGAHWAIVPAAASELFGLKSFGALYNFLTLASPAGSLIFSGVIASGIYDYYAEKQAGLLWKYNGNMLPVSFRDQETPTCLGSICYSITCGIMAGLCIIAMVMSLIVVHRTKSVYAQLYGN******
Disordered Region (DISOPRED)
MLAVLLLEDLEVANQNVLTVLAVGLIIIILLPVTIPVVLVFFTEPP*********************************************************************************TLPQALMKADFLLLFFSLVLASGSGLTVIDNLGQICQSLGYADTSIYVSMISIWNFLGRVGGGYFSEAIVRKFAYPRPVAMAVAQVVMAFALLYYAIGWPGEIYVTTVLVGLSYGAHWAIVPAAASELFGLKSFGALYNFLTLASPAGSLIFSGVIASGIYDYYAEKQAGLLWKY*GNMLPVSFRDQETPTCLGSICYSITCGIMAGLCIIAMVMSLIVVHRTKSVYA***********
Disordered Region (DISEMBL)
MLAVLLLEDLEVANQNVLTVLAVGLIIIILLPVTIPVVLVFFTEPPPPVEETLLAE*************EEVILSE***************ERQKRIAHLQAKLFQAAAEGAVRVKRRKGPRRGEDFTLPQALMKADFLLLFFSLVLASGSGLTVIDNLGQICQSLGYADTSIYVSMISIWNFLGRVGGGYFSEAIVRKFAYPRPVAMAVAQVVMAFALLYYAIGWPGEIYVTTVLVGLSYGAHWAIVPAAASELFGLKSFGALYNFLTLASPAGSLIFSGVIASGIYDYYAEKQAGLLWKYNGNMLPVSFRDQETPTCLGSICYSITCGIMAGLCIIAMVMSLIVVHRTKSVYAQLYGNLNRSNR
Disordered Region (DISPRO)
MLAVLLLEDLEVANQNVLTVLAVGLIIIILLPVTIPVVLVFFTEPPPPVEETLLAE*****************************************AHLQAKLFQAAAEGAVRVKRRKGPRRGEDFTLPQALMKADFLLLFFSLVLASGSGLTVIDNLGQICQSLGYADTSIYVSMISIWNFLGRVGGGYFSEAIVRKFAYPRPVAMAVAQVVMAFALLYYAIGWPGEIYVTTVLVGLSYGAHWAIVPAAASELFGLKSFGALYNFLTLASPAGSLIFSGVIASGIYDYYAEKQAG****Y************ETPTCLGSICYSITCGIMAGLCIIAMVMSLIVVHRTKSVYAQLYGNLNR***
Transmembrane Helix (TMHMM)
oooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiii
Transmembrane Helix (HMMTOP)
ooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHooooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiii
Transmembrane Helix (MEMSAT)
oooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHoooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
oooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooHHHHHHHHHHHHHHHHHHiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHoooHHHHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHoooooooooooHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHoooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiii
Signal Peptide (SignalP HMM Mode)
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MLAVLLLEDLEVANQNVLTVLAVGLIIIILLPVTIPVVLVFFTEPPPPVEETLLAETNKGEASKSEDYQEEVILSEVEDEKPPEVDSLPASERQKRIAHLQAKLFQAAAEGAVRVKRRKGPRRGEDFTLPQALMKADFLLLFFSLVLASGSGLTVIDNLGQICQSLGYADTSIYVSMISIWNFLGRVGGGYFSEAIVRKFAYPRPVAMAVAQVVMAFALLYYAIGWPGEIYVTTVLVGLSYGAHWAIVPAAASELFGLKSFGALYNFLTLASPAGSLIFSGVIASGIYDYYAEKQAGLLWKYNGNMLPVSFRDQETPTCLGSICYSITCGIMAGLCIIAMVMSLIVVHRTKSVYAQLYGNLNRSNR
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	366	2.2.26 [Sep-21-2011]
P37662	402	Inner membrane protein Yh	N/A	no	0.415	0.378	0.288	3e-05
Q6CGU8	486	Probable transporter MCH1	no	no	0.568	0.427	0.254	0.0004

>sp|P37662|YHJX_ECOLI Inner membrane protein YhjX OS=Escherichia coli (strain K12) GN=yhjX PE=1 SV=1

 Score = 50.1 bits (118), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 47/163 (28%), Positives = 76/163 (46%), Gaps = 11/163 (6%)

Query: 125 EDFTLPQALMKADFLLLFFSLVLASGSGLTVIDNLGQICQSLGYADT---SIYVSMISIW 181
           +D+TL +++ K  + +L    + A  SGL VI     I QSL + D    +  V++ISI 
Sbjct: 203 KDYTLAESMRKPQYWMLAVMFLTACMSGLYVIGVAKDIAQSLAHLDVVSAANAVTVISIA 262

Query: 182 NFLGRVGGGYFSEAIVRKFAYPRPVAMAVAQVVMAFALLYYAIGWPGEIYVTTVLVGLSY 241
           N  GR+  G  S+ I R     R + +     ++  A L +A       +     V  ++
Sbjct: 263 NLSGRLVLGILSDKIAR----IRVITIGQVISLVGMAALLFAPLNAVTFFAAIACVAFNF 318

Query: 242 GAHWAIVPAAASELFGL----KSFGALYNFLTLASPAGSLIFS 280
           G    + P+  SE FGL    K++G +Y    + S  GS+I S
Sbjct: 319 GGTITVFPSLVSEFFGLNNLAKNYGVIYLGFGIGSICGSIIAS 361

Escherichia coli (strain K12) (taxid: 83333)

>sp|Q6CGU8|MCH1_YARLI Probable transporter MCH1 OS=Yarrowia lipolytica (strain CLIB 122 / E 150) GN=MCH1 PE=3 SV=1

 Score = 46.2 bits (108), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 63/248 (25%), Positives = 107/248 (43%), Gaps = 40/248 (16%)

Query: 96  RIAHLQAKLFQAAAEGAVRVKRRKGPRRGEDFTLPQALMKADFLLLFFSLVLASGSGLTV 155
           R A   A   +  AE +       GP   E  TL +        L     V   G     
Sbjct: 234 RTAESMASELRKKAEASTDCNC-DGPGH-EGATLKEFFTDKTAWLFLLCFVFIGGPFEMF 291

Query: 156 IDNLGQICQSLGY--ADT---SIYVSMISIWNFLGRVGGGYFSEAIVRKFAYPRPVAMAV 210
            +N+G I  ++    AD+   S +VS+ + ++ + R+  G+ SEA+    +  RPV ++V
Sbjct: 292 QNNMGAILDTVTVENADSPSFSTHVSLFATFSTVSRLVVGFSSEAMESHVS--RPVLLSV 349

Query: 211 AQVVMAFALLYYAIGWPGEIY----------VTTVLVGLSYGAHWAIVPAAASELFGLKS 260
             +V A   L      P  I+          V T++ G SYG+ + +VP   ++++G+ +
Sbjct: 350 IALVAACIHLMV----PSGIFTVFDNAKYFSVVTIVNGFSYGSSFTLVPTIVTKVWGIAN 405

Query: 261 FGALYNFLTLASPAGSLIFSGVIASGIYDYYAEKQAGLLWKYNGNMLPVSFRDQETPTCL 320
            G ++    LA   GSL + G++ + +YD  A  + G+     G+M  V         C 
Sbjct: 406 LGTIWGSFILALAVGSLGY-GLLFAKVYD--AASEVGV-----GSMSQV---------CS 448

Query: 321 GSICYSIT 328
           G  CY +T
Sbjct: 449 GVHCYGLT 456

Probable transporter.

Yarrowia lipolytica (strain CLIB 122 / E 150) (taxid: 284591)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	366
255540211	589	conserved hypothetical protein [Ricinus	0.983	0.611	0.761	1e-150
224122040	591	predicted protein [Populus trichocarpa]	0.983	0.609	0.745	1e-147
147789864	590	hypothetical protein VITISV_001273 [Viti	0.898	0.557	0.732	1e-139
359491100	588	PREDICTED: uncharacterized protein LOC10	0.898	0.559	0.732	1e-139
147853498	591	hypothetical protein VITISV_016786 [Viti	0.983	0.609	0.663	1e-129
225451469	591	PREDICTED: uncharacterized protein LOC10	0.983	0.609	0.663	1e-129
255536871	589	conserved hypothetical protein [Ricinus	0.983	0.611	0.659	1e-123
312282435	579	unnamed protein product [Thellungiella h	0.948	0.599	0.614	1e-119
225451471	591	PREDICTED: uncharacterized protein LOC10	0.983	0.609	0.655	1e-118
297807437	579	nodulin family protein [Arabidopsis lyra	0.948	0.599	0.606	1e-117

>gi|255540211|ref|XP_002511170.1| conserved hypothetical protein [Ricinus communis] gi|223550285|gb|EEF51772.1| conserved hypothetical protein [Ricinus communis]

 Score =  536 bits (1380), Expect = e-150,   Method: Compositional matrix adjust.
 Identities = 278/365 (76%), Positives = 319/365 (87%), Gaps = 5/365 (1%)

Query: 1   MLAVLLLEDLEVANQNVLTVLAVGLIIIILLPVTIPVVLVFFTEPPPPVEETLLAETNKG 60
           +L VL+LED+   +Q+++T+ ++ LII+ILLP+TIPV+LVFF EP   VEETLL E  K 
Sbjct: 226 LLGVLILEDVVDVSQSLVTLFSIILIILILLPITIPVLLVFFFEPRSQVEETLLPEPEKQ 285

Query: 61  EASKSEDYQE--EVILSEVEDEKPPEVDSLPASERQKRIAHLQAKLFQAAAEGAVRVKRR 118
           E   S   Q+  EVILSEVEDEKP EV+SLPASER KRIAHLQAKLFQAAAEGAVRVKR+
Sbjct: 286 EGVNSGQEQDANEVILSEVEDEKPAEVESLPASERHKRIAHLQAKLFQAAAEGAVRVKRK 345

Query: 119 KGPRRGEDFTLPQALMKADFLLLFFSLVLASGSGLTVIDNLGQICQSLGYADTSIYVSMI 178
           KGPRRGEDFTL QAL+KADFLL+FFSL+LASGSGLTVIDNLGQICQSLGY +TSI+VSMI
Sbjct: 346 KGPRRGEDFTLLQALVKADFLLMFFSLILASGSGLTVIDNLGQICQSLGYTNTSIFVSMI 405

Query: 179 SIWNFLGRVGGGYFSEAIVRKFAYPRPVAMAVAQVVMAFALLYYAIGWPGEIYVTTVLVG 238
           SIWNFLGRVGGGYFSEAI+R FAYPRPVAMAVAQV+MA  L YYA+GWPGEIYV ++L+G
Sbjct: 406 SIWNFLGRVGGGYFSEAIIRNFAYPRPVAMAVAQVIMAIGLFYYAMGWPGEIYVVSILIG 465

Query: 239 LSYGAHWAIVPAAASELFGLKSFGALYNFLTLASPAGSLIFSGVIASGIYDYYAEKQAGL 298
           LSYGAHWAIVPAA SELFGLKSFGALYNFLTL+S AGSLIFSGVIASGIYDYYAEKQA  
Sbjct: 466 LSYGAHWAIVPAAVSELFGLKSFGALYNFLTLSSTAGSLIFSGVIASGIYDYYAEKQA-- 523

Query: 299 LWKYN-GNMLPVSFRDQETPTCLGSICYSITCGIMAGLCIIAMVMSLIVVHRTKSVYAQL 357
           + + N G+ML     ++E+ TC+GSICYS+TCGIM+GLCI+AM++SLIVVHRT+SVYAQL
Sbjct: 524 IQQLNAGSMLAAHLVEEESLTCVGSICYSLTCGIMSGLCIVAMILSLIVVHRTRSVYAQL 583

Query: 358 YGNLN 362
           YG  N
Sbjct: 584 YGKTN 588

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224122040|ref|XP_002318735.1| predicted protein [Populus trichocarpa] gi|222859408|gb|EEE96955.1| predicted protein [Populus trichocarpa]

 Score =  526 bits (1354), Expect = e-147,   Method: Compositional matrix adjust.
 Identities = 269/361 (74%), Positives = 311/361 (86%), Gaps = 1/361 (0%)

Query: 1   MLAVLLLEDLEVANQNVLTVLAVGLIIIILLPVTIPVVLVFFTEPPPPVEETLLAETNKG 60
           +L VL++EDL   NQ +LTVL   LII++LLP+TIPV+L F++EP  PVEE LL ET+K 
Sbjct: 228 LLGVLIVEDLVNLNQTLLTVLVAVLIILVLLPITIPVLLAFYSEPRHPVEENLLPETDKQ 287

Query: 61  EASKSE-DYQEEVILSEVEDEKPPEVDSLPASERQKRIAHLQAKLFQAAAEGAVRVKRRK 119
           E+SKSE       ILSE+EDEKP E+D L  +ER +RIAHLQAKLFQAAAEGAVR+KRRK
Sbjct: 288 ESSKSELQIGGSFILSEMEDEKPSEMDLLQPTERHRRIAHLQAKLFQAAAEGAVRIKRRK 347

Query: 120 GPRRGEDFTLPQALMKADFLLLFFSLVLASGSGLTVIDNLGQICQSLGYADTSIYVSMIS 179
           GPRRGEDFTL QAL KADFLL+FFSLVLASGSGLTVIDNLGQICQSLGY DTSI+VSMIS
Sbjct: 348 GPRRGEDFTLMQALRKADFLLMFFSLVLASGSGLTVIDNLGQICQSLGYNDTSIFVSMIS 407

Query: 180 IWNFLGRVGGGYFSEAIVRKFAYPRPVAMAVAQVVMAFALLYYAIGWPGEIYVTTVLVGL 239
           IWNFLGRVGGGYFSEAI+RK+AYPRPVAMAV QVVMA AL YYA+GWPGEIYV ++ +GL
Sbjct: 408 IWNFLGRVGGGYFSEAIIRKYAYPRPVAMAVVQVVMAVALFYYAMGWPGEIYVLSIFIGL 467

Query: 240 SYGAHWAIVPAAASELFGLKSFGALYNFLTLASPAGSLIFSGVIASGIYDYYAEKQAGLL 299
            YGAHWAIVPA+ASELFGLKSFGALYNFLTL+SPAGSLIFSGVIASGIYD++A KQAGL 
Sbjct: 468 GYGAHWAIVPASASELFGLKSFGALYNFLTLSSPAGSLIFSGVIASGIYDHFARKQAGLQ 527

Query: 300 WKYNGNMLPVSFRDQETPTCLGSICYSITCGIMAGLCIIAMVMSLIVVHRTKSVYAQLYG 359
              +G++      ++++ TC+G  CYS+TCGIM+GLCIIA+++SLIVV RTKSVYAQLYG
Sbjct: 528 QLNSGSLPATHLEEEKSLTCVGLECYSLTCGIMSGLCIIAVILSLIVVRRTKSVYAQLYG 587

Query: 360 N 360
           N
Sbjct: 588 N 588

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|147789864|emb|CAN73867.1| hypothetical protein VITISV_001273 [Vitis vinifera]

 Score =  499 bits (1286), Expect = e-139,   Method: Compositional matrix adjust.
 Identities = 241/329 (73%), Positives = 279/329 (84%)

Query: 32  PVTIPVVLVFFTEPPPPVEETLLAETNKGEASKSEDYQEEVILSEVEDEKPPEVDSLPAS 91
           PV IP++LVFF+ P  P EE  L E  K E+ KSE   EEVILSEVEDEKP EVDSLPAS
Sbjct: 259 PVAIPIILVFFSGPIAPSEEAFLPEPQKQESGKSEQDGEEVILSEVEDEKPVEVDSLPAS 318

Query: 92  ERQKRIAHLQAKLFQAAAEGAVRVKRRKGPRRGEDFTLPQALMKADFLLLFFSLVLASGS 151
           ER KRIAHLQAKLFQAAAEGAVRVKR++GPRRGEDFTL QAL+KADF L+F SL+LA+GS
Sbjct: 319 ERHKRIAHLQAKLFQAAAEGAVRVKRKRGPRRGEDFTLMQALIKADFWLIFVSLLLAAGS 378

Query: 152 GLTVIDNLGQICQSLGYADTSIYVSMISIWNFLGRVGGGYFSEAIVRKFAYPRPVAMAVA 211
           GLT+IDN+GQ+C+SLGY+DTS++VSMISIWNFLGRVGGGYFSE+IVR FA+PRPV+MA+ 
Sbjct: 379 GLTIIDNMGQMCESLGYSDTSVFVSMISIWNFLGRVGGGYFSESIVRNFAFPRPVSMAMF 438

Query: 212 QVVMAFALLYYAIGWPGEIYVTTVLVGLSYGAHWAIVPAAASELFGLKSFGALYNFLTLA 271
           QV+M+  LLYYA+ WPG IYV +VL+GL YGAHWAIVPAAASELFGLKSFGALYNFLTL+
Sbjct: 439 QVLMSVGLLYYALAWPGAIYVVSVLIGLGYGAHWAIVPAAASELFGLKSFGALYNFLTLS 498

Query: 272 SPAGSLIFSGVIASGIYDYYAEKQAGLLWKYNGNMLPVSFRDQETPTCLGSICYSITCGI 331
           S  G+LIFS VIASGIYD+YAEKQA L     G M  +     E+ +C G ICYSITCG+
Sbjct: 499 SSIGTLIFSEVIASGIYDHYAEKQAALKQHSLGAMAGLPLGKDESLSCEGYICYSITCGV 558

Query: 332 MAGLCIIAMVMSLIVVHRTKSVYAQLYGN 360
           M+GLC++A+V+SLIVVHRTKSVYA LYG 
Sbjct: 559 MSGLCLVAVVLSLIVVHRTKSVYANLYGR 587

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359491100|ref|XP_002280267.2| PREDICTED: uncharacterized protein LOC100247479 [Vitis vinifera] gi|297734441|emb|CBI15688.3| unnamed protein product [Vitis vinifera]

 Score =  499 bits (1285), Expect = e-139,   Method: Compositional matrix adjust.
 Identities = 241/329 (73%), Positives = 279/329 (84%)

Query: 32  PVTIPVVLVFFTEPPPPVEETLLAETNKGEASKSEDYQEEVILSEVEDEKPPEVDSLPAS 91
           PV IP++LVFF+ P  P EE  L E  K E+ KSE   EEVILSEVEDEKP EVDSLPAS
Sbjct: 257 PVAIPIILVFFSGPIAPSEEAFLPEPQKQESGKSEQDGEEVILSEVEDEKPVEVDSLPAS 316

Query: 92  ERQKRIAHLQAKLFQAAAEGAVRVKRRKGPRRGEDFTLPQALMKADFLLLFFSLVLASGS 151
           ER KRIAHLQAKLFQAAAEGAVRVKR++GPRRGEDFTL QAL+KADF L+F SL+LA+GS
Sbjct: 317 ERHKRIAHLQAKLFQAAAEGAVRVKRKRGPRRGEDFTLMQALIKADFWLIFVSLLLAAGS 376

Query: 152 GLTVIDNLGQICQSLGYADTSIYVSMISIWNFLGRVGGGYFSEAIVRKFAYPRPVAMAVA 211
           GLT+IDN+GQ+C+SLGY+DTS++VSMISIWNFLGRVGGGYFSE+IVR FA+PRPV+MA+ 
Sbjct: 377 GLTIIDNMGQMCESLGYSDTSVFVSMISIWNFLGRVGGGYFSESIVRNFAFPRPVSMAMF 436

Query: 212 QVVMAFALLYYAIGWPGEIYVTTVLVGLSYGAHWAIVPAAASELFGLKSFGALYNFLTLA 271
           QV+M+  LLYYA+ WPG IYV +VL+GL YGAHWAIVPAAASELFGLKSFGALYNFLTL+
Sbjct: 437 QVLMSVGLLYYALAWPGAIYVVSVLIGLGYGAHWAIVPAAASELFGLKSFGALYNFLTLS 496

Query: 272 SPAGSLIFSGVIASGIYDYYAEKQAGLLWKYNGNMLPVSFRDQETPTCLGSICYSITCGI 331
           S  G+LIFS VIASGIYD+YAEKQA L     G M  +     E+ +C G ICYSITCG+
Sbjct: 497 SSIGTLIFSEVIASGIYDHYAEKQAALKQHSLGAMAGLPLGKDESLSCEGYICYSITCGV 556

Query: 332 MAGLCIIAMVMSLIVVHRTKSVYAQLYGN 360
           M+GLC++A+V+SLIVVHRTKSVYA LYG 
Sbjct: 557 MSGLCLVAVVLSLIVVHRTKSVYANLYGR 585

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|147853498|emb|CAN82292.1| hypothetical protein VITISV_016786 [Vitis vinifera]

 Score =  468 bits (1204), Expect = e-129,   Method: Compositional matrix adjust.
 Identities = 241/363 (66%), Positives = 285/363 (78%), Gaps = 3/363 (0%)

Query: 1   MLAVLLLEDLEVANQNVLTVLAVGLIIIILLPVTIPVVLVFFTEPPPPVEETLLAETNKG 60
           ++ V+L++DL   +  V+T+    L ++IL P+ IPV L FF+EP  P  E LL E  K 
Sbjct: 226 LMGVMLVQDLVHLSHTVVTIFTAILFVLILAPIVIPVSLSFFSEPKAPEAEALLTEPQKD 285

Query: 61  EASKSEDYQEEVILSEVEDEKPPEVDSLPASERQKRIAHLQAKLFQAAAEGAVRVKRRKG 120
           E  KSE    EVI SEVEDEKP EVD LPASERQKRIAHLQAKLFQAAAEGAVRVKRR+G
Sbjct: 286 EPGKSEQDATEVIFSEVEDEKPKEVDLLPASERQKRIAHLQAKLFQAAAEGAVRVKRRRG 345

Query: 121 PRRGEDFTLPQALMKADFLLLFFSLVLASGSGLTVIDNLGQICQSLGYADTSIYVSMISI 180
           P RGEDFTL QAL+KADF L+FFSL+L SGSGLTVIDNLGQ+ QSLGY +T I+VSMISI
Sbjct: 346 PHRGEDFTLMQALIKADFWLIFFSLLLGSGSGLTVIDNLGQMSQSLGYHNTHIFVSMISI 405

Query: 181 WNFLGRVGGGYFSEAIVRKFAYPRPVAMAVAQVVMAFALLYYAIGWPGEIYVTTVLVGLS 240
           WNFLGR+GGGYFSE IVR  AYPRPVAMA AQV+MA   L++A+GWPG +++ T+L+GL 
Sbjct: 406 WNFLGRIGGGYFSEMIVRDHAYPRPVAMAAAQVIMALGHLFFAMGWPGAMHIGTLLIGLG 465

Query: 241 YGAHWAIVPAAASELFGLKSFGALYNFLTLASPAGSLIFSGVIASGIYDYYAEKQA---G 297
           YGAHWAIVPAAASELFGLK+FGALYNFLTLA+PAGSL+FSGVIAS IYD  AEKQA    
Sbjct: 466 YGAHWAIVPAAASELFGLKNFGALYNFLTLANPAGSLVFSGVIASSIYDREAEKQAHHHH 525

Query: 298 LLWKYNGNMLPVSFRDQETPTCLGSICYSITCGIMAGLCIIAMVMSLIVVHRTKSVYAQL 357
            L +  G++        + P C GSIC+ +T  IM+GLCIIA+V+S+++VHRTK VYA L
Sbjct: 526 HLQQNVGSIFSGMLSMDDPPKCEGSICFFLTSMIMSGLCIIAVVLSMVLVHRTKIVYANL 585

Query: 358 YGN 360
           YG 
Sbjct: 586 YGK 588

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225451469|ref|XP_002270737.1| PREDICTED: uncharacterized protein LOC100244537 [Vitis vinifera] gi|296082334|emb|CBI21339.3| unnamed protein product [Vitis vinifera]

 Score =  468 bits (1203), Expect = e-129,   Method: Compositional matrix adjust.
 Identities = 241/363 (66%), Positives = 285/363 (78%), Gaps = 3/363 (0%)

Query: 1   MLAVLLLEDLEVANQNVLTVLAVGLIIIILLPVTIPVVLVFFTEPPPPVEETLLAETNKG 60
           ++ V+L++DL   +  V+T+    L ++IL P+ IPV L FF+EP  P  E LL E  K 
Sbjct: 226 LMGVMLVQDLVHLSHTVVTIFTAILFVLILAPIVIPVSLSFFSEPKAPEAEALLTEPQKD 285

Query: 61  EASKSEDYQEEVILSEVEDEKPPEVDSLPASERQKRIAHLQAKLFQAAAEGAVRVKRRKG 120
           E  KSE    EVI SEVEDEKP EVD LPASERQKRIAHLQAKLFQAAAEGAVRVKRR+G
Sbjct: 286 EPGKSEQDATEVIFSEVEDEKPKEVDLLPASERQKRIAHLQAKLFQAAAEGAVRVKRRRG 345

Query: 121 PRRGEDFTLPQALMKADFLLLFFSLVLASGSGLTVIDNLGQICQSLGYADTSIYVSMISI 180
           P RGEDFTL QAL+KADF L+FFSL+L SGSGLTVIDNLGQ+ QSLGY +T I+VSMISI
Sbjct: 346 PHRGEDFTLMQALIKADFWLIFFSLLLGSGSGLTVIDNLGQMSQSLGYHNTHIFVSMISI 405

Query: 181 WNFLGRVGGGYFSEAIVRKFAYPRPVAMAVAQVVMAFALLYYAIGWPGEIYVTTVLVGLS 240
           WNFLGR+GGGYFSE IVR  AYPRPVAMA AQV+MA   L++A+GWPG +++ T+L+GL 
Sbjct: 406 WNFLGRIGGGYFSEMIVRDHAYPRPVAMAAAQVIMALGHLFFAMGWPGAMHIGTLLIGLG 465

Query: 241 YGAHWAIVPAAASELFGLKSFGALYNFLTLASPAGSLIFSGVIASGIYDYYAEKQA---G 297
           YGAHWAIVPAAASELFGLK+FGALYNFLTLA+PAGSL+FSGVIAS IYD  AEKQA    
Sbjct: 466 YGAHWAIVPAAASELFGLKNFGALYNFLTLANPAGSLVFSGVIASSIYDREAEKQAHHHH 525

Query: 298 LLWKYNGNMLPVSFRDQETPTCLGSICYSITCGIMAGLCIIAMVMSLIVVHRTKSVYAQL 357
            L +  G++        + P C GSIC+ +T  IM+GLCIIA+V+S+++VHRTK VYA L
Sbjct: 526 HLQQNVGSIFSGMLSMDDPPKCEGSICFFLTSMIMSGLCIIAVVLSMVLVHRTKIVYANL 585

Query: 358 YGN 360
           YG 
Sbjct: 586 YGK 588

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255536871|ref|XP_002509502.1| conserved hypothetical protein [Ricinus communis] gi|223549401|gb|EEF50889.1| conserved hypothetical protein [Ricinus communis]

 Score =  447 bits (1151), Expect = e-123,   Method: Compositional matrix adjust.
 Identities = 238/361 (65%), Positives = 283/361 (78%), Gaps = 1/361 (0%)

Query: 1   MLAVLLLEDLEVANQNVLTVLAVGLIIIILLPVTIPVVLVFFTEPPPPVEETLLAETNKG 60
           ++ V+LLEDL   +  ++ V  V L +++LLP+ IP+ L FF EP  P EETLL E+ K 
Sbjct: 226 LMGVMLLEDLVDLSHTLIIVFTVVLFVLLLLPIVIPIWLSFFHEPRDPAEETLLPESEKQ 285

Query: 61  EASKSEDYQEEVILSEVEDEKPPEVDSLPASERQKRIAHLQAKLFQAAAEGAVRVKRRKG 120
           EA KSE    EVILSEVEDEKP EVD LPASER+KRIA LQ KLFQAAAEGAVR+KRR+G
Sbjct: 286 EAGKSEQDGHEVILSEVEDEKPKEVDLLPASERKKRIAQLQTKLFQAAAEGAVRIKRRRG 345

Query: 121 PRRGEDFTLPQALMKADFLLLFFSLVLASGSGLTVIDNLGQICQSLGYADTSIYVSMISI 180
           P RGEDFTL QAL+KADF L+F SL+L SGSGLTVIDNLGQ+ QSLGY +T I+VSMISI
Sbjct: 346 PHRGEDFTLMQALIKADFWLIFVSLLLGSGSGLTVIDNLGQMSQSLGYDNTHIFVSMISI 405

Query: 181 WNFLGRVGGGYFSEAIVRKFAYPRPVAMAVAQVVMAFALLYYAIGWPGEIYVTTVLVGLS 240
           WNFLGRVGGGYFSE IVR +AYPRP+AMAVAQ VMA   +++A  WPG +Y+ T+L+GL 
Sbjct: 406 WNFLGRVGGGYFSEIIVRDYAYPRPIAMAVAQFVMAIGHVFFAFDWPGTMYIGTLLIGLG 465

Query: 241 YGAHWAIVPAAASELFGLKSFGALYNFLTLASPAGSLIFSGVIASGIYDYYAEKQAG-LL 299
           YGAHWAIVPAAASELFGLK FGALYNFLTLA+PAGSL+FSG+IAS IYD  AE+QA    
Sbjct: 466 YGAHWAIVPAAASELFGLKKFGALYNFLTLANPAGSLVFSGLIASRIYDREAERQAHEHH 525

Query: 300 WKYNGNMLPVSFRDQETPTCLGSICYSITCGIMAGLCIIAMVMSLIVVHRTKSVYAQLYG 359
            +  G++    F   E   C G++CY +T  IM+G CIIA+++SLI+VHRTK VYA LYG
Sbjct: 526 MRTAGSLFSGLFGPDEPLKCEGAVCYFLTSMIMSGFCIIAVILSLILVHRTKIVYANLYG 585

Query: 360 N 360
            
Sbjct: 586 K 586

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|312282435|dbj|BAJ34083.1| unnamed protein product [Thellungiella halophila]

 Score =  432 bits (1112), Expect = e-119,   Method: Compositional matrix adjust.
 Identities = 223/363 (61%), Positives = 278/363 (76%), Gaps = 16/363 (4%)

Query: 1   MLAVLLLEDLEVANQNVLTVLAVGLIIIILLPVTIPVVLVFFTE---PPPPVEETLLAET 57
           ++AV+L+EDL V + N++TV  + L +I+++P+ +P++  FFTE   P   VEE L+ + 
Sbjct: 227 LMAVMLIEDLVVVSHNIITVFTIVLFVILVVPILVPIMTSFFTESNAPADTVEEPLVPKR 286

Query: 58  NKGEASKSEDYQEEVILSEVEDEKPPEVDSLPASERQKRIAHLQAKLFQAAAEGAVRVKR 117
              E  +      ++ILSEVEDEKP E+D LPASER KRIAHLQA+L QAAAEGAVRVKR
Sbjct: 287 ENQEPGQQ---TPDLILSEVEDEKPKEMDLLPASERHKRIAHLQARLMQAAAEGAVRVKR 343

Query: 118 RKGPRRGEDFTLPQALMKADFLLLFFSLVLASGSGLTVIDNLGQICQSLGYADTSIYVSM 177
            +GP RGEDFTL QAL+KADF L+FFSL+L SGSGLTVIDNLGQ+ QSLGY +T ++VSM
Sbjct: 344 HRGPHRGEDFTLTQALVKADFWLIFFSLLLGSGSGLTVIDNLGQMSQSLGYDNTHVFVSM 403

Query: 178 ISIWNFLGRVGGGYFSEAIVRKFAYPRPVAMAVAQVVMAFALLYYAIGWPGEIYVTTVLV 237
           ISIWNFLGR+GGGYFSE IVR +AYPRPVAMAVAQ+VM+   +++A GWPG +Y+ T+L+
Sbjct: 404 ISIWNFLGRIGGGYFSELIVRDYAYPRPVAMAVAQLVMSVGHVFFAFGWPGAMYIGTLLI 463

Query: 238 GLSYGAHWAIVPAAASELFGLKSFGALYNFLTLASPAGSLIFSGVIASGIYDYYAEKQAG 297
           GL YGAHWAIVPA ASELFGLK FGALYNFLTLA+PAGSL+FSG+IAS IYD  AE+QA 
Sbjct: 464 GLGYGAHWAIVPATASELFGLKKFGALYNFLTLANPAGSLVFSGLIASTIYDREAERQAH 523

Query: 298 LLWKYNGNMLPVSFRDQETPTCLGSICYSITCGIMAGLCIIAMVMSLIVVHRTKSVYAQL 357
           +            F   +   C G ICY +T  IM+G CIIA ++S+I+V RTKSVY+ L
Sbjct: 524 V----------SVFDPDDALRCEGYICYFLTSLIMSGFCIIACILSMILVRRTKSVYSHL 573

Query: 358 YGN 360
           YG 
Sbjct: 574 YGK 576

Source: Thellungiella halophila

Species: Eutrema halophilum

Genus: Eutrema

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225451471|ref|XP_002270809.1| PREDICTED: uncharacterized protein LOC100266857 [Vitis vinifera] gi|296082332|emb|CBI21337.3| unnamed protein product [Vitis vinifera]

 Score =  431 bits (1109), Expect = e-118,   Method: Compositional matrix adjust.
 Identities = 238/363 (65%), Positives = 283/363 (77%), Gaps = 3/363 (0%)

Query: 1   MLAVLLLEDLEVANQNVLTVLAVGLIIIILLPVTIPVVLVFFTEPPPPVEETLLAETNKG 60
           ++ V+LL+DL   +  V+T+    L +++L+P+ IPV L F +EP  P  E LL E  K 
Sbjct: 226 LMGVMLLQDLVDLSHTVVTIFTAILFVLVLVPIVIPVSLSFPSEPKAPELEALLTEPQKE 285

Query: 61  EASKSEDYQEEVILSEVEDEKPPEVDSLPASERQKRIAHLQAKLFQAAAEGAVRVKRRKG 120
           E  KSE    EVI SE+EDEKP EVD LPASERQKRIAHLQAKLFQAAAEGAVRVKRR+G
Sbjct: 286 EPGKSEQDATEVIFSELEDEKPKEVDLLPASERQKRIAHLQAKLFQAAAEGAVRVKRRRG 345

Query: 121 PRRGEDFTLPQALMKADFLLLFFSLVLASGSGLTVIDNLGQICQSLGYADTSIYVSMISI 180
           PRRGEDFTL QAL+KADF L+FFSL+L SGSGLTVIDNLGQ+ QSLGY +T I+VSMISI
Sbjct: 346 PRRGEDFTLMQALIKADFWLIFFSLLLGSGSGLTVIDNLGQMSQSLGYDNTHIFVSMISI 405

Query: 181 WNFLGRVGGGYFSEAIVRKFAYPRPVAMAVAQVVMAFALLYYAIGWPGEIYVTTVLVGLS 240
           WNFLGR+GGGYFSE IVR +AYPRPVAMAVAQV MA   L++A+GWPG +Y+ T+L+GL 
Sbjct: 406 WNFLGRIGGGYFSEMIVRDYAYPRPVAMAVAQVTMALGHLFFAMGWPGSLYIGTLLIGLG 465

Query: 241 YGAHWAIVPAAASELFGLKSFGALYNFLTLASPAGSLIFSGVIASGIYDYYAEKQAGLLW 300
           YGAHWAIVPAAASELFGLK+FGALYNF+ LA+P GSL+FSGVIAS IYD  AEKQA    
Sbjct: 466 YGAHWAIVPAAASELFGLKNFGALYNFINLANPTGSLVFSGVIASSIYDREAEKQAHHHH 525

Query: 301 KYNGNMLPV---SFRDQETPTCLGSICYSITCGIMAGLCIIAMVMSLIVVHRTKSVYAQL 357
               NM  +        + P C GSIC+ +T  IM+G+CIIA+V+S+++VHRTK VYA L
Sbjct: 526 HQQQNMGSIFSGMLSVDDPPKCEGSICFFLTSMIMSGICIIAVVLSMVLVHRTKVVYANL 585

Query: 358 YGN 360
           YG 
Sbjct: 586 YGK 588

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297807437|ref|XP_002871602.1| nodulin family protein [Arabidopsis lyrata subsp. lyrata] gi|297317439|gb|EFH47861.1| nodulin family protein [Arabidopsis lyrata subsp. lyrata]

 Score =  429 bits (1102), Expect = e-117,   Method: Compositional matrix adjust.
 Identities = 220/363 (60%), Positives = 280/363 (77%), Gaps = 16/363 (4%)

Query: 1   MLAVLLLEDLEVANQNVLTVLAVGLIIIILLPVTIPVVLVFFTE---PPPPVEETLLAET 57
           ++AV+L++DL V + NV+T+  + L +I+++P+ +P++  FFTE   P   +EE L+ + 
Sbjct: 227 LMAVMLIQDLVVVSHNVITMFTIVLFVILVVPILVPIMTSFFTETNEPDDTIEEPLVPKR 286

Query: 58  NKGEASKSEDYQEEVILSEVEDEKPPEVDSLPASERQKRIAHLQAKLFQAAAEGAVRVKR 117
              E         ++ILSEVEDEKP +VD LPASER KRIAHLQA+L QAAAEGAVRVKR
Sbjct: 287 EDQEPGMQT---PDLILSEVEDEKPKDVDLLPASERHKRIAHLQAQLMQAAAEGAVRVKR 343

Query: 118 RKGPRRGEDFTLPQALMKADFLLLFFSLVLASGSGLTVIDNLGQICQSLGYADTSIYVSM 177
           R+GP RGEDFTL QAL+KADF L+FFSL+L SGSGLTVIDNLGQ+ QSLGY +T + VSM
Sbjct: 344 RRGPHRGEDFTLTQALVKADFWLIFFSLLLGSGSGLTVIDNLGQMSQSLGYDNTHVLVSM 403

Query: 178 ISIWNFLGRVGGGYFSEAIVRKFAYPRPVAMAVAQVVMAFALLYYAIGWPGEIYVTTVLV 237
           ISIWNFLGR+GGGYFSE +VR +AYPRPVAMAVAQ++M+   +++A GWPG +Y+ T+L+
Sbjct: 404 ISIWNFLGRIGGGYFSELVVRDYAYPRPVAMAVAQLIMSVGHIFFAYGWPGAMYIGTLLI 463

Query: 238 GLSYGAHWAIVPAAASELFGLKSFGALYNFLTLASPAGSLIFSGVIASGIYDYYAEKQAG 297
           GL YGAHWAIVPA ASELFGLK FGALYNFLTLA+PAGSL+FSG+IAS IYD  AE+QA 
Sbjct: 464 GLGYGAHWAIVPATASELFGLKKFGALYNFLTLANPAGSLVFSGMIASSIYDREAERQA- 522

Query: 298 LLWKYNGNMLPVSFRDQETPTCLGSICYSITCGIMAGLCIIAMVMSLIVVHRTKSVYAQL 357
                +G++    F   +   C GSIC+ +T  +M+G CIIA ++S+I+V RTKSVY  L
Sbjct: 523 -----HGSV----FDPDDALRCNGSICFFLTSLVMSGFCIIACILSMILVRRTKSVYTHL 573

Query: 358 YGN 360
           YG 
Sbjct: 574 YGK 576

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	366
TAIR|locus:2174683	579	AT5G14120 [Arabidopsis thalian	0.762	0.481	0.584	1.7e-84
TAIR|locus:2078643	584	AT3G01930 [Arabidopsis thalian	0.784	0.491	0.572	2.2e-82
TAIR|locus:2159752	540	AT5G50520 [Arabidopsis thalian	0.622	0.422	0.525	2.6e-63
TAIR|locus:2832385	540	AT5G50630 [Arabidopsis thalian	0.622	0.422	0.525	2.6e-63
TAIR|locus:2056103	601	AT2G39210 "AT2G39210" [Arabido	0.617	0.376	0.354	3.8e-33
TAIR|locus:2046238	577	AT2G28120 [Arabidopsis thalian	0.633	0.402	0.345	3.1e-31
TAIR|locus:2198938	561	AT1G80530 "AT1G80530" [Arabido	0.519	0.338	0.352	4.6e-30
TAIR|locus:2116855	567	AT4G34950 [Arabidopsis thalian	0.472	0.305	0.381	7.8e-28
TAIR|locus:2059829	546	AT2G16660 [Arabidopsis thalian	0.472	0.316	0.369	1.4e-26
TAIR|locus:2027284	533	AT1G74780 [Arabidopsis thalian	0.505	0.347	0.354	2.7e-26

TAIR|locus:2174683 AT5G14120 [Arabidopsis thaliana (taxid:3702)]

 Score = 827 (296.2 bits), Expect = 1.7e-84, Sum P(2) = 1.7e-84
 Identities = 169/289 (58%), Positives = 202/289 (69%)

Query:    71 EVILSEVEDEKPPEVDSLPASERQKRIAHLQAKLFQAAAEGAXXXXXXXXXXXXEDFTLP 130
             ++ILSEVEDEKP +VD LPASER KRIAHLQA+L QAAAEGA            EDFTL 
Sbjct:   297 DLILSEVEDEKPKDVDLLPASERHKRIAHLQAQLMQAAAEGAVRVNRRRGPHRGEDFTLT 356

Query:   131 QALMKADXXXXXXXXXXXXXXXXTVIDNLGQICQSLGYADTSIYVSMISIWNFLGRVGGG 190
             QAL+KAD                TVIDNLGQ+ QSLGY +T + VSMISIWNFLGR+GGG
Sbjct:   357 QALVKADFWLIFFSLLLGSGSGLTVIDNLGQMSQSLGYDNTHVLVSMISIWNFLGRIGGG 416

Query:   191 YFSEAIVRKFAYPRPXXXXXXXXXXXFALLYYAIGWPGEIYVTTVLVGLSYGAHWAIVPA 250
             YFSE +VR +AYPRP              +++A GWPG +Y+ T+L+GL YGAHWAIVPA
Sbjct:   417 YFSELVVRDYAYPRPVAMAVAQLIMSVGHIFFAYGWPGAMYIGTLLIGLGYGAHWAIVPA 476

Query:   251 AASELFGLKSFGALYNFLTLASPAGSLIFSGVIASGIYDYYAEKQAGLLWKYNGNMLPVS 310
              ASELFGLK FGALYNFLTLA+PAGSL+FSG+IAS IYD  AE+QA      +G++    
Sbjct:   477 TASELFGLKKFGALYNFLTLANPAGSLVFSGMIASSIYDREAERQA------HGSV---- 526

Query:   311 FRDQETPTCLGSICYSITCGIMAGLCIIAMVMSLIVVHRTKSVYAQLYG 359
             F   +   C GSIC+ +T  IM+G CIIA ++S+I+V RTKSVY  LYG
Sbjct:   527 FDPDDALRCNGSICFFLTSLIMSGFCIIACMLSMILVRRTKSVYTHLYG 575

GO:0005773 "vacuole" evidence=IDA

GO:0005774 "vacuolar membrane" evidence=IDA

GO:0010167 "response to nitrate" evidence=RCA

GO:0015706 "nitrate transport" evidence=RCA

GO:0019344 "cysteine biosynthetic process" evidence=RCA

TAIR|locus:2078643 AT3G01930 [Arabidopsis thaliana (taxid:3702)]

 Score = 826 (295.8 bits), Expect = 2.2e-82, P = 2.2e-82
 Identities = 170/297 (57%), Positives = 201/297 (67%)

Query:    63 SKSEDYQEEVILSEVEDEKPPEVDSLPASERQKRIAHLQAKLFQAAAEGAXXXXXXXXXX 122
             S + D+  E+I SEVEDEKP EVD LPA ER KRIA LQAKL QAAAEGA          
Sbjct:   294 STTPDHGPELIFSEVEDEKPKEVDLLPAVERHKRIAQLQAKLMQAAAEGAVRVKRRRGPH 353

Query:   123 XXEDFTLPQALMKADXXXXXXXXXXXXXXXXTVIDNLGQICQSLGYADTSIYVSMISIWN 182
               EDFTL QAL+KAD                TVIDNLGQ+ QSLGY +T ++VSMISIWN
Sbjct:   354 RGEDFTLTQALVKADFWLIFFSLLLGSGSGLTVIDNLGQMSQSLGYDNTHVFVSMISIWN 413

Query:   183 FLGRVGGGYFSEAIVRKFAYPRPXXXXXXXXXXXFALLYYAIGWPGEIYVTTVLVGLSYG 242
             FLGR+GGGYFSE IVR +AYPRP              +++A GWPG +++ T+L+GL YG
Sbjct:   414 FLGRIGGGYFSELIVRDYAYPRPVAIAVAQLVMSVGHIFFAYGWPGAMHIGTLLIGLGYG 473

Query:   243 AHWAIVPAAASELFGLKSFGALYNFLTLASPAGSLIFSGVIASGIYDYYAEKQAGLLWKY 302
             AHWAIVPA ASELFGLK FGALYNFLTLA+PAGSL+FSG+IAS IYD  AE+QA      
Sbjct:   474 AHWAIVPATASELFGLKKFGALYNFLTLANPAGSLVFSGLIASSIYDREAERQA------ 527

Query:   303 NGNMLPVSFRDQETPTCLGSICYSITCGIMAGLCIIAMVMSLIVVHRTKSVYAQLYG 359
              G++    F   +   C GSICY +T  IM+G C+IA  +S+I+V RTK VY  LYG
Sbjct:   528 QGSL----FNPDDVLRCRGSICYFLTSLIMSGFCLIAAALSMILVQRTKPVYTNLYG 580

GO:0005886 "plasma membrane" evidence=ISM

TAIR|locus:2159752 AT5G50520 [Arabidopsis thaliana (taxid:3702)]

 Score = 646 (232.5 bits), Expect = 2.6e-63, P = 2.6e-63
 Identities = 126/240 (52%), Positives = 163/240 (67%)

Query:   125 EDFTLPQALMKADXXXXXXXXXXXXXXXXTVIDNLGQICQSLGYADTSIYVSMISIWNFL 184
             EDFTL QAL +AD                T+IDNLGQIC SLGY++T I+VS+ISI NFL
Sbjct:   313 EDFTLLQALGQADFWLIFMSLVLGVGSGITIIDNLGQICYSLGYSNTKIFVSLISISNFL 372

Query:   185 GRVGGGYFSEAIVRKFAYPRPXXXXXXXXXXXFALLYYAIGWPGEIYVTTVLVGLSYGAH 244
             GRV GGYFSE I+RK + PR              L+YYAI WPG+IYV T+++G+ YGAH
Sbjct:   373 GRVAGGYFSELIIRKLSLPRTLAMSVVQAIMSLGLIYYAIDWPGKIYVVTIVIGMGYGAH 432

Query:   245 WAIVPAAASELFGLKSFGALYNFLTLASPAGSLIFSGVIASGIYDYYAEKQAGLLWKYNG 304
             WAI PA+ S++FGLKSFG+LYNF   A P GS +FSGVIAS IYDYYA KQAG       
Sbjct:   433 WAIAPASVSDIFGLKSFGSLYNFQITALPIGSFVFSGVIASNIYDYYARKQAG------- 485

Query:   305 NMLPVSFRDQETPTCLGSICYSITCGIMAGLCIIAMVMSLIVVHRTKSVYAQLYGNLNRS 364
                P +  + E+  C GS+CYS+TC +M+ LC++AMV+SL VV+RT+  Y +L+  ++++
Sbjct:   486 ---PTT--ETESLVCTGSVCYSVTCSLMSMLCLMAMVLSLSVVYRTRKFYLRLHHRVSKT 540

GO:0005576 "extracellular region" evidence=ISM

TAIR|locus:2832385 AT5G50630 [Arabidopsis thaliana (taxid:3702)]

 Score = 646 (232.5 bits), Expect = 2.6e-63, P = 2.6e-63
 Identities = 126/240 (52%), Positives = 163/240 (67%)

Query:   125 EDFTLPQALMKADXXXXXXXXXXXXXXXXTVIDNLGQICQSLGYADTSIYVSMISIWNFL 184
             EDFTL QAL +AD                T+IDNLGQIC SLGY++T I+VS+ISI NFL
Sbjct:   313 EDFTLLQALGQADFWLIFMSLVLGVGSGITIIDNLGQICYSLGYSNTKIFVSLISISNFL 372

Query:   185 GRVGGGYFSEAIVRKFAYPRPXXXXXXXXXXXFALLYYAIGWPGEIYVTTVLVGLSYGAH 244
             GRV GGYFSE I+RK + PR              L+YYAI WPG+IYV T+++G+ YGAH
Sbjct:   373 GRVAGGYFSELIIRKLSLPRTLAMSVVQAIMSLGLIYYAIDWPGKIYVVTIVIGMGYGAH 432

Query:   245 WAIVPAAASELFGLKSFGALYNFLTLASPAGSLIFSGVIASGIYDYYAEKQAGLLWKYNG 304
             WAI PA+ S++FGLKSFG+LYNF   A P GS +FSGVIAS IYDYYA KQAG       
Sbjct:   433 WAIAPASVSDIFGLKSFGSLYNFQITALPIGSFVFSGVIASNIYDYYARKQAG------- 485

Query:   305 NMLPVSFRDQETPTCLGSICYSITCGIMAGLCIIAMVMSLIVVHRTKSVYAQLYGNLNRS 364
                P +  + E+  C GS+CYS+TC +M+ LC++AMV+SL VV+RT+  Y +L+  ++++
Sbjct:   486 ---PTT--ETESLVCTGSVCYSVTCSLMSMLCLMAMVLSLSVVYRTRKFYLRLHHRVSKT 540

GO:0005576 "extracellular region" evidence=ISM

TAIR|locus:2056103 AT2G39210 "AT2G39210" [Arabidopsis thaliana (taxid:3702)]

 Score = 366 (133.9 bits), Expect = 3.8e-33, P = 3.8e-33
 Identities = 84/237 (35%), Positives = 127/237 (53%)

Query:   125 EDFTLPQALMKADXXXXXXXXXXXXXXXXTVIDNLGQICQSLGYADTSI--YVSMISIWN 182
             +D+T+ QAL   D                T IDNLGQI  SLGY   S+  +VS++SIWN
Sbjct:   332 DDYTILQALFSVDMLILFLATICGVGGTLTAIDNLGQIGNSLGYPKRSVSTFVSLVSIWN 391

Query:   183 FLGRVGGGYFSEAIVRKFAYPRPXXXXXXXXXXXFALLYYAIGWPGEIYVTTVLVGLSYG 242
             + GRV  G  SE  + K+ +PRP              L  A   PG +YV +V++G  +G
Sbjct:   392 YYGRVVSGVVSEIFLIKYKFPRPLMLTMVLLLSCAGHLLIAFNVPGGLYVASVIIGFCFG 451

Query:   243 AHWAIVPAAASELFGLKSFGALYNFLTLASPAGSLIFSGVIASGIYDYYAEKQAGLLWKY 302
             A W ++ A  SE+FGLK +  LYNF ++ASP GS + +  +A  +YD  A KQ   L K 
Sbjct:   452 AQWPLLFAIISEIFGLKYYSTLYNFGSVASPIGSYLLNVRVAGYLYDVEAGKQYKALGKT 511

Query:   303 NGNMLPVSFRDQETPTCLGSICYSITCGIMAGLCIIAMVMSLIVVHRTKSVY-AQLY 358
                   V  +D     C+G+ C+ ++  I+A + +  +++S+++V RTK  Y + +Y
Sbjct:   512 R-----VEGQDLN---CIGTSCFKLSFIIIAAVTLFGVLVSMVLVIRTKKFYKSDIY 560

GO:0003674 "molecular_function" evidence=ND

GO:0009507 "chloroplast" evidence=ISM

GO:0055085 "transmembrane transport" evidence=IEA

GO:0009506 "plasmodesma" evidence=IDA

GO:0050832 "defense response to fungus" evidence=IEP

GO:0006865 "amino acid transport" evidence=RCA

GO:0006888 "ER to Golgi vesicle-mediated transport" evidence=RCA

GO:0009627 "systemic acquired resistance" evidence=RCA

GO:0034976 "response to endoplasmic reticulum stress" evidence=RCA

GO:0043090 "amino acid import" evidence=RCA

TAIR|locus:2046238 AT2G28120 [Arabidopsis thaliana (taxid:3702)]

 Score = 348 (127.6 bits), Expect = 3.1e-31, P = 3.1e-31
 Identities = 84/243 (34%), Positives = 125/243 (51%)

Query:   125 EDFTLPQALMKADXXXXXXXXXXXXXXXXTVIDNLGQICQSLGYADTSI--YVSMISIWN 182
             ED+T+ QAL+  D                T +DNLGQI +SLGY + ++  +VS++SIWN
Sbjct:   323 EDYTILQALLSTDMIILFVATFCGLGSSLTAVDNLGQIGESLGYPNHTVSSFVSLVSIWN 382

Query:   183 FLGRVGGGYFSEAIVRKFAYPRPXXXXXXXXXXXFALLYYAIGWPGEIYVTTVLVGLSYG 242
             + GRV  G+ SE ++ K+  PRP              L  A   PG +Y+ ++L+G S+G
Sbjct:   383 YFGRVFSGFVSEYLLAKYKLPRPLMMTLVLLLSCAGHLLIAFPVPGSVYIASILMGFSFG 442

Query:   243 AHWAIVPAAASELFGLKSFGALYNFLTLASPAGSLIFSGVIASGIYDYYAEKQAGLLWKY 302
             A   ++ A  SELFGLK +  L+N   LASP GS I +  +   +YD  A KQ       
Sbjct:   443 AQLPLLFAIISELFGLKYYSTLFNCGQLASPLGSYILNVRVTGMLYDKEALKQLTA---- 498

Query:   303 NGNMLPVSFRDQETPTCLGSICYSITCGIMAGLCIIAMVMSLIVVHRTKSVY-AQLYGNL 361
              G    ++ +D +  TCLGS CY +   I+A +     ++SL +  RT+  Y   +Y   
Sbjct:   499 RG----LTRKDVKDLTCLGSQCYKLPFLILAAVTFFGALVSLGLAIRTREFYKGDIYKKF 554

Query:   362 NRS 364
               S
Sbjct:   555 RES 557

GO:0016021 "integral to membrane" evidence=IEA

GO:0055085 "transmembrane transport" evidence=IEA

GO:0005886 "plasma membrane" evidence=IDA

TAIR|locus:2198938 AT1G80530 "AT1G80530" [Arabidopsis thaliana (taxid:3702)]

 Score = 272 (100.8 bits), Expect = 4.6e-30, Sum P(2) = 4.6e-30
 Identities = 68/193 (35%), Positives = 93/193 (48%)

Query:   103 KLFQAAAEGAXXXXXXXXXXXXEDFTLPQALMKADXXXXXXXXXXXXXXXXTVIDNLGQI 162
             ++  A AEGA            EDF   Q  +KAD                TV +NL QI
Sbjct:   314 EILLAEAEGAVKKKRKPRRG--EDFKFGQVFVKADFWLLWFVYFLGMGSGVTVSNNLAQI 371

Query:   163 CQSLGYADTSIYVSMISIWNFLGRVGGGYFSEAIVRKFAYPRPXXXXXXXXXXXFALLYY 222
               + G  DT+I + + S +NF+GR+  G  SE  VR    PR            F  L +
Sbjct:   372 GFAFGIKDTTILLCLFSFFNFIGRLASGAISEHFVRSRTLPRTLWMGAAQLVMVFTFLLF 431

Query:   223 AIGWPGEIYVTTVLVGLSYGAHWAIVPAAASELFGLKSFGALYNFLTLASPAGSLIFSGV 282
             A+     IYV T L+G+  G  +  + A  SELFGL+ FG  +NF+ L +P G+ IFS +
Sbjct:   432 AMAIDHTIYVATALIGICMGFQFLSI-ATISELFGLRHFGINFNFILLGNPLGATIFSAI 490

Query:   283 IASGIYDYYAEKQ 295
             +A  IYD  A+KQ
Sbjct:   491 LAGYIYDKEADKQ 503

GO:0003674 "molecular_function" evidence=ND

GO:0005634 "nucleus" evidence=IDA

GO:0080167 "response to karrikin" evidence=IEP

TAIR|locus:2116855 AT4G34950 [Arabidopsis thaliana (taxid:3702)]

 Score = 317 (116.6 bits), Expect = 7.8e-28, P = 7.8e-28
 Identities = 66/173 (38%), Positives = 92/173 (53%)

Query:   125 EDFTLPQALMKADXXXXXXXXXXXXXXXXTVIDNLGQICQSLGYADTSIYVSMISIWNFL 184
             E+ T+ +A++  D                 V++N+GQI  +LGY D SI+VSM SIW F 
Sbjct:   338 EEHTIMEAMLTVDFWVLFVSFLCGVGTGLAVMNNMGQIGLALGYTDVSIFVSMTSIWGFF 397

Query:   185 GRVGGGYFSEAIVRKFAYPRPXXXXXXXXXXXFALLYYAIGWPGEIYVTTVLVGLSYGAH 244
             GR+  G  SE  ++K   PRP              L  A+  PG +Y+ +++VG+ YG  
Sbjct:   398 GRILSGTISEHFIKKAGTPRPLWNAAAQIIMAVGYLLMALALPGSLYIGSMVVGVCYGVR 457

Query:   245 WAIVPAAASELFGLKSFGALYNFLTLASPAGSLIFSGVIASGIYDYYAEKQAG 297
              AI    ASELFGLK +G +YN L L  P GS +FSG++A  +YD  A    G
Sbjct:   458 LAITVPTASELFGLKYYGLIYNILILNMPLGSFLFSGLLAGLLYDAEATPTPG 510

GO:0009507 "chloroplast" evidence=ISM

GO:0007623 "circadian rhythm" evidence=RCA

GO:0019761 "glucosinolate biosynthetic process" evidence=RCA

TAIR|locus:2059829 AT2G16660 [Arabidopsis thaliana (taxid:3702)]

 Score = 305 (112.4 bits), Expect = 1.4e-26, P = 1.4e-26
 Identities = 64/173 (36%), Positives = 91/173 (52%)

Query:   125 EDFTLPQALMKADXXXXXXXXXXXXXXXXTVIDNLGQICQSLGYADTSIYVSMISIWNFL 184
             ED T+ +A++  D                 V++N+GQI  +LGY + SI+VSM SIW F 
Sbjct:   317 EDHTIMEAVLTVDFWVLFVSFLCGVGTGLAVMNNMGQIGLALGYTNVSIFVSMTSIWGFF 376

Query:   185 GRVGGGYFSEAIVRKFAYPRPXXXXXXXXXXXFALLYYAIGWPGEIYVTTVLVGLSYGAH 244
             GR+  G  SE  ++K   PRP              +  A+  P  +Y+ +++VG+ YG  
Sbjct:   377 GRILSGTLSEYFLKKAGTPRPLWNAASQILMAVGYILMALAVPNSLYIGSMVVGVCYGVR 436

Query:   245 WAIVPAAASELFGLKSFGALYNFLTLASPAGSLIFSGVIASGIYDYYAEKQAG 297
              AI    ASELFGLK +G +YN L L  P GS +FSG++A  +YD  A    G
Sbjct:   437 LAITVPTASELFGLKYYGLIYNILVLNLPLGSFLFSGLLAGFLYDAEATPTPG 489

GO:0009507 "chloroplast" evidence=ISM

GO:0080167 "response to karrikin" evidence=IEP

TAIR|locus:2027284 AT1G74780 [Arabidopsis thaliana (taxid:3702)]

 Score = 302 (111.4 bits), Expect = 2.7e-26, P = 2.7e-26
 Identities = 67/189 (35%), Positives = 99/189 (52%)

Query:   125 EDFTLPQALMKADXXXXXXXXXXXXXXXXTVIDNLGQICQSLGYADTSI--YVSMISIWN 182
             E+  L QA+ K                  + I+N+ QI +SL Y+   I   VS+ SIWN
Sbjct:   311 ENLNLLQAMKKLSFWLLFLAMICGMGSGLSTINNIRQIGESLRYSSVEINSLVSLWSIWN 370

Query:   183 FLGRVGGGYFSEAIVRKFAYPRPXXXXXXXXXXXFALLYYAIGWPGEIYVTTVLVGLSYG 242
             FLGR G GY S+A++ K  +PRP              L  A G+ G +YV +V+VG+ YG
Sbjct:   371 FLGRFGAGYASDALLHKKGWPRPLLMAATLGTMSIGHLIIASGFQGNLYVGSVIVGVCYG 430

Query:   243 AHWAIVPAAASELFGLKSFGALYNFLTLASPAGSLIFSGVIASGIYDYYAEKQAGLLWKY 302
             + W+++P   SELFG++  G ++N +++ASP GS IFS  +   IYD  A  +      Y
Sbjct:   431 SQWSLMPTITSELFGIRHMGTIFNTISVASPIGSYIFSVRLIGYIYDKTASGEGNTC--Y 488

Query:   303 NGNMLPVSF 311
               +   +SF
Sbjct:   489 GSHCFRLSF 497

GO:0016021 "integral to membrane" evidence=IEA

GO:0055085 "transmembrane transport" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: GSVIVG00017962001 SubName- Full=Chromosome chr17 scaffold_16, whole genome shotgun sequence; (588 aa) (Vitis vinifera)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	366
TIGR00890	377	TIGR00890, 2A0111, oxalate/formate antiporter fami	1e-14
TIGR04259	405	TIGR04259, oxa_formateAnti, oxalate/formate antipo	5e-05
cd06174	352	cd06174, MFS, The Major Facilitator Superfamily (M	1e-04
cd06174	352	cd06174, MFS, The Major Facilitator Superfamily (M	5e-04

>gnl|CDD|233171 TIGR00890, 2A0111, oxalate/formate antiporter family transporter

 Score = 74.0 bits (182), Expect = 1e-14
 Identities = 50/172 (29%), Positives = 77/172 (44%), Gaps = 6/172 (3%)

Query: 122 RRGEDFTLPQALMKADFLLLFFSLVLASGSGLTVIDNLGQICQSLGYADT--SIYVSMIS 179
              +D+T+ + L    F +L+ S  L + SGL +I       QSLG +D    + VS+ S
Sbjct: 191 VSVKDYTVWEMLRTPQFWVLYLSFFLNAVSGLLLIGLYKPYGQSLGLSDGFLVLAVSISS 250

Query: 180 IWNFLGRVGGGYFSEAIVRKFAYPRPVAMAVAQVVMAFALLYYAIGWPGEIYVTTVLVGL 239
           I+N  GR   G  S+ I R+      +   ++ V MA  L    +        T  LV  
Sbjct: 251 IFNGGGRPFLGALSDKIGRQKTM--SIVFGISAVGMAAMLFIPMLN-DVLFLATVALVFF 307

Query: 240 SYGAHWAIVPAAASELFGLKSFGALYNFLTLASPAGSLIFSGVIASGIYDYY 291
           ++G   ++ P+  S++FG  +  A Y FL  A      IF G+IAS      
Sbjct: 308 TWGGTISLFPSLVSDIFGPANSAANYGFLYTAKAVAG-IFGGLIASHALTEI 358

This subfamily belongs to the major facilitator family. Members include the oxalate/formate antiporter of Oxalobacter formigenes, where one substrate is decarboxylated in the cytosol into the other to consume a proton and drive an ion gradient [Transport and binding proteins, Carbohydrates, organic alcohols, and acids]. Length = 377

>gnl|CDD|234525 TIGR04259, oxa_formateAnti, oxalate/formate antiporter

 Score = 44.4 bits (105), Expect = 5e-05
 Identities = 38/167 (22%), Positives = 65/167 (38%), Gaps = 20/167 (11%)

Query: 126 DFTLPQALMKADFLLLFFSLVLASGSGLTVIDNLGQICQSLGYADT------------SI 173
           DF+  + L    F +++   V+ +  GL     LG I +  G AD             + 
Sbjct: 197 DFSPGEMLRTPVFWVMYTMFVMVAAGGLMATAQLGPIAKDFGVADVPVTLLGLTMAALTF 256

Query: 174 YVSMISIWNFLGRVGGGYFSEAIVRKFAYPRPVAMAVAQVVMAFAL-LYYAIGW-PGEIY 231
            +S+  I N   R   G+ S+ I R+        M VA  +    + L    G  P    
Sbjct: 257 ALSIDRILNGFTRPFFGWISDKIGRE------NTMFVAFGIEGVGIYLLPTFGHNPVAFV 310

Query: 232 VTTVLVGLSYGAHWAIVPAAASELFGLKSFGALYNFLTLASPAGSLI 278
           + + LV  ++G  +++ PA  ++ FG K        L  A    +L+
Sbjct: 311 ILSALVFFAWGEIYSLFPATCADTFGSKYAATNAGLLYTAKGTAALL 357

This model represents a subgroup of the more broadly defined model TIGR00890, which in turn belongs to the Major Facilitator transporter family. Seed members for this family include the known oxalate/formate antiporter of Oxalobacter formigenes, as well as transporter subunits co-clustered with the two genes of a system that decarboxylates oxalate into formate. In many of these cassettes, two subunits are found rather than one, suggesting the antiporter is sometimes homodimeric, sometimes heterodimeric. Length = 405

>gnl|CDD|119392 cd06174, MFS, The Major Facilitator Superfamily (MFS) is a large and diverse group of secondary transporters that includes uniporters, symporters, and antiporters

 Score = 43.1 bits (102), Expect = 1e-04
 Identities = 34/210 (16%), Positives = 63/210 (30%), Gaps = 34/210 (16%)

Query: 138 FLLLFFSLVLASGSGLTVIDNLGQICQSLGYADTSIYVSMISIWNFLGRVGGGYFSEAIV 197
            LLL  +  L S     ++  L    Q +     +    ++     LG + G      + 
Sbjct: 177 LLLLALAFFLLSFGYYGLLTYLPLYLQEVLGLSAA-EAGLLLSLFGLGGILGALLGGLLS 235

Query: 198 RKFAYPRPVAMAVAQVVMAFALLYYAIGWPGEIYVTTVLVGLSYGAHWAIVPAAASELFG 257
            +    R + +    +     LL         + V  +L+G   G  +  +   ASEL  
Sbjct: 236 DRLGRRRLLLLIGLLLAALGLLLLALAPSLALLLVALLLLGFGLGFAFPALLTLASELAP 295

Query: 258 LKSFGALYNFLTLASPAGSLIFSGVIASGIYDYYAEKQAGLLWKYNGNMLPVSFRDQETP 317
            ++ G            G  +   +             AGLL    G             
Sbjct: 296 PEARGTASGLFNTFGSLGGALGPLL-------------AGLLLDTGG------------- 329

Query: 318 TCLGSICYSITCGIMAGLCIIAMVMSLIVV 347
                  Y     I+A L ++A ++ L++ 
Sbjct: 330 -------YGGVFLILAALALLAALLLLLLP 352

MFS proteins facilitate the transport across cytoplasmic or internal membranes of a variety of substrates including ions, sugar phosphates, drugs, neurotransmitters, nucleosides, amino acids, and peptides. They do so using the electrochemical potential of the transported substrates. Uniporters transport a single substrate, while symporters and antiporters transport two substrates in the same or in opposite directions, respectively, across membranes. MFS proteins are typically 400 to 600 amino acids in length, and the majority contain 12 transmembrane alpha helices (TMs) connected by hydrophilic loops. The N- and C-terminal halves of these proteins display weak similarity and may be the result of a gene duplication/fusion event. Based on kinetic studies and the structures of a few bacterial superfamily members, GlpT (glycerol-3-phosphate transporter), LacY (lactose permease), and EmrD (multidrug transporter), MFS proteins are thought to function through a single substrate binding site, alternating-access mechanism involving a rocker-switch type of movement. Bacterial members function primarily for nutrient uptake, and as drug-efflux pumps to confer antibiotic resistance. Some MFS proteins have medical significance in humans such as the glucose transporter Glut4, which is impaired in type II diabetes, and glucose-6-phosphate transporter (G6PT), which causes glycogen storage disease when mutated. Length = 352

>gnl|CDD|119392 cd06174, MFS, The Major Facilitator Superfamily (MFS) is a large and diverse group of secondary transporters that includes uniporters, symporters, and antiporters

 Score = 41.5 bits (98), Expect = 5e-04
 Identities = 32/155 (20%), Positives = 54/155 (34%), Gaps = 8/155 (5%)

Query: 138 FLLLFFSLVLASGSGLTVIDNLGQICQSLGYADTSIYVSMISIWNFLGRVGGGYFSEAIV 197
            L L F L       L+    L      L  +   + VS  S+   LG +  GY S+   
Sbjct: 3   LLFLGFFLSGLDRGLLSPALPLLAEDLGLSASQAGLIVSAFSLGYALGSLLAGYLSDR-- 60

Query: 198 RKFAYPRPVAMAVAQVVMAFALLYYAIGW-PGEIYVTTVLVGLSYGAHWAIVPAAASELF 256
               + R   + +  ++ A   L  A       + V   L+GL  GA +    A  +E F
Sbjct: 61  ----FGRRRVLLLGLLLFALGSLLLAFASSLWLLLVGRFLLGLGGGALYPAAAALIAEWF 116

Query: 257 GLKSFGALYNFLTLASPAGSLIFSGVIASGIYDYY 291
             K  G      +     G+L+   ++   + +  
Sbjct: 117 PPKERGRALGLFSAGFGLGALL-GPLLGGLLAESL 150

MFS proteins facilitate the transport across cytoplasmic or internal membranes of a variety of substrates including ions, sugar phosphates, drugs, neurotransmitters, nucleosides, amino acids, and peptides. They do so using the electrochemical potential of the transported substrates. Uniporters transport a single substrate, while symporters and antiporters transport two substrates in the same or in opposite directions, respectively, across membranes. MFS proteins are typically 400 to 600 amino acids in length, and the majority contain 12 transmembrane alpha helices (TMs) connected by hydrophilic loops. The N- and C-terminal halves of these proteins display weak similarity and may be the result of a gene duplication/fusion event. Based on kinetic studies and the structures of a few bacterial superfamily members, GlpT (glycerol-3-phosphate transporter), LacY (lactose permease), and EmrD (multidrug transporter), MFS proteins are thought to function through a single substrate binding site, alternating-access mechanism involving a rocker-switch type of movement. Bacterial members function primarily for nutrient uptake, and as drug-efflux pumps to confer antibiotic resistance. Some MFS proteins have medical significance in humans such as the glucose transporter Glut4, which is impaired in type II diabetes, and glucose-6-phosphate transporter (G6PT), which causes glycogen storage disease when mutated. Length = 352

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	366
PTZ00207	591	hypothetical protein; Provisional	100.0
PRK11273	452	glpT sn-glycerol-3-phosphate transporter; Provisio	99.65
PRK09556	467	uhpT sugar phosphate antiporter; Reviewed	99.64
PRK11663	434	regulatory protein UhpC; Provisional	99.61
PRK10504	471	putative transporter; Provisional	99.61
TIGR00890	377	2A0111 Oxalate/Formate Antiporter.	99.6
COG2271	448	UhpC Sugar phosphate permease [Carbohydrate transp	99.59
PRK11663	434	regulatory protein UhpC; Provisional	99.59
PRK03545	390	putative arabinose transporter; Provisional	99.58
TIGR02332	412	HpaX 4-hydroxyphenylacetate permease. This protein	99.58
COG2814	394	AraJ Arabinose efflux permease [Carbohydrate trans	99.58
TIGR00893	399	2A0114 d-galactonate transporter.	99.58
KOG2504	509	consensus Monocarboxylate transporter [Carbohydrat	99.57
PRK14995	495	methyl viologen resistance protein SmvA; Provision	99.57
TIGR01299	742	synapt_SV2 synaptic vesicle protein SV2. This mode	99.57
PRK10213	394	nepI ribonucleoside transporter; Reviewed	99.57
PRK09705	393	cynX putative cyanate transporter; Provisional	99.56
PRK10091	382	MFS transport protein AraJ; Provisional	99.56
TIGR00900	365	2A0121 H+ Antiporter protein.	99.55
PRK15403	413	multidrug efflux system protein MdtM; Provisional	99.54
TIGR00710	385	efflux_Bcr_CflA drug resistance transporter, Bcr/C	99.54
PRK11551	406	putative 3-hydroxyphenylpropionic transporter MhpT	99.54
PRK10054	395	putative transporter; Provisional	99.53
TIGR00711	485	efflux_EmrB drug resistance transporter, EmrB/QacA	99.53
PF07690	352	MFS_1: Major Facilitator Superfamily; InterPro: IP	99.53
TIGR00892	455	2A0113 monocarboxylate transporter 1.	99.53
PRK11551	406	putative 3-hydroxyphenylpropionic transporter MhpT	99.51
TIGR00893	399	2A0114 d-galactonate transporter.	99.51
COG2223	417	NarK Nitrate/nitrite transporter [Inorganic ion tr	99.51
TIGR00890	377	2A0111 Oxalate/Formate Antiporter.	99.5
PRK10473	392	multidrug efflux system protein MdtL; Provisional	99.5
TIGR00924	475	yjdL_sub1_fam amino acid/peptide transporter (Pept	99.5
TIGR00903	368	2A0129 major facilitator 4 family protein. This fa	99.5
TIGR00889	418	2A0110 nucleoside transporter. This family of prot	99.49
PRK05122	399	major facilitator superfamily transporter; Provisi	99.49
PRK03699	394	putative transporter; Provisional	99.49
PRK03699	394	putative transporter; Provisional	99.49
PRK15402	406	multidrug efflux system translocase MdfA; Provisio	99.49
PRK12307	426	putative sialic acid transporter; Provisional	99.49
PRK11652	394	emrD multidrug resistance protein D; Provisional	99.48
TIGR00891	405	2A0112 putative sialic acid transporter.	99.48
cd06174	352	MFS The Major Facilitator Superfamily (MFS) is a l	99.48
PRK15034	462	nitrate/nitrite transport protein NarU; Provisiona	99.48
TIGR00895	398	2A0115 benzoate transport.	99.48
PRK09874	408	drug efflux system protein MdtG; Provisional	99.47
PRK11102	377	bicyclomycin/multidrug efflux system; Provisional	99.47
PRK15462	493	dipeptide/tripeptide permease D; Provisional	99.47
PRK12382	392	putative transporter; Provisional	99.47
PRK09584	500	tppB putative tripeptide transporter permease; Rev	99.47
TIGR01299	742	synapt_SV2 synaptic vesicle protein SV2. This mode	99.46
PRK03633	381	putative MFS family transporter protein; Provision	99.46
TIGR00894	465	2A0114euk Na(+)-dependent inorganic phosphate cotr	99.46
TIGR00712	438	glpT glycerol-3-phosphate transporter. This model	99.46
PRK11195	393	lysophospholipid transporter LplT; Provisional	99.46
TIGR00712	438	glpT glycerol-3-phosphate transporter. This model	99.45
PRK11646	400	multidrug resistance protein MdtH; Provisional	99.45
TIGR00892	455	2A0113 monocarboxylate transporter 1.	99.45
TIGR00879	481	SP MFS transporter, sugar porter (SP) family. This	99.45
PRK03893	496	putative sialic acid transporter; Provisional	99.45
TIGR00886	366	2A0108 nitrite extrusion protein (nitrite facilita	99.45
PLN00028	476	nitrate transmembrane transporter; Provisional	99.45
PRK10642	490	proline/glycine betaine transporter; Provisional	99.45
PRK10207	489	dipeptide/tripeptide permease B; Provisional	99.45
TIGR00897	402	2A0118 polyol permease family. This family of prot	99.45
TIGR00902	382	2A0127 phenyl proprionate permease family protein.	99.44
PRK09952	438	shikimate transporter; Provisional	99.44
TIGR00881	379	2A0104 phosphoglycerate transporter family protein	99.44
PRK11043	401	putative transporter; Provisional	99.44
PRK09528	420	lacY galactoside permease; Reviewed	99.44
COG2271	448	UhpC Sugar phosphate permease [Carbohydrate transp	99.43
PRK03545	390	putative arabinose transporter; Provisional	99.43
PRK11273	452	glpT sn-glycerol-3-phosphate transporter; Provisio	99.43
PRK10489	417	enterobactin exporter EntS; Provisional	99.43
PLN00028	476	nitrate transmembrane transporter; Provisional	99.43
TIGR02332	412	HpaX 4-hydroxyphenylacetate permease. This protein	99.43
PRK09556	467	uhpT sugar phosphate antiporter; Reviewed	99.42
PRK09705	393	cynX putative cyanate transporter; Provisional	99.42
TIGR00899	375	2A0120 sugar efflux transporter. This family of pr	99.41
PRK12382	392	putative transporter; Provisional	99.4
TIGR00903	368	2A0129 major facilitator 4 family protein. This fa	99.4
TIGR00881	379	2A0104 phosphoglycerate transporter family protein	99.4
PRK10406	432	alpha-ketoglutarate transporter; Provisional	99.4
PF06609	599	TRI12: Fungal trichothecene efflux pump (TRI12); I	99.4
TIGR00883	394	2A0106 metabolite-proton symporter. This model rep	99.4
PRK10077	479	xylE D-xylose transporter XylE; Provisional	99.39
PRK09874	408	drug efflux system protein MdtG; Provisional	99.38
TIGR00879	481	SP MFS transporter, sugar porter (SP) family. This	99.37
PRK05122	399	major facilitator superfamily transporter; Provisi	99.37
TIGR00897	402	2A0118 polyol permease family. This family of prot	99.37
TIGR00887	502	2A0109 phosphate:H+ symporter. This model represen	99.37
cd06174	352	MFS The Major Facilitator Superfamily (MFS) is a l	99.37
PRK10489	417	enterobactin exporter EntS; Provisional	99.37
TIGR00898	505	2A0119 cation transport protein.	99.36
KOG2532	466	consensus Permease of the major facilitator superf	99.36
PRK10642	490	proline/glycine betaine transporter; Provisional	99.35
TIGR02718	390	sider_RhtX_FptX siderophore transporter, RhtX/FptX	99.35
PRK03633	381	putative MFS family transporter protein; Provision	99.35
PRK12307	426	putative sialic acid transporter; Provisional	99.35
TIGR00792	437	gph sugar (Glycoside-Pentoside-Hexuronide) transpo	99.34
PRK15034	462	nitrate/nitrite transport protein NarU; Provisiona	99.34
TIGR00896	355	CynX cyanate transporter. This family of proteins	99.34
KOG1330	493	consensus Sugar transporter/spinster transmembrane	99.33
PRK10077	479	xylE D-xylose transporter XylE; Provisional	99.33
PF11700	477	ATG22: Vacuole effluxer Atg22 like; InterPro: IPR0	99.32
PRK10406	432	alpha-ketoglutarate transporter; Provisional	99.32
PRK11128	382	putative 3-phenylpropionic acid transporter; Provi	99.32
TIGR01272	310	gluP glucose/galactose transporter. Disruption of	99.31
TIGR00894	465	2A0114euk Na(+)-dependent inorganic phosphate cotr	99.31
TIGR00880	141	2_A_01_02 Multidrug resistance protein.	99.31
PRK15011	393	sugar efflux transporter B; Provisional	99.3
PRK09952	438	shikimate transporter; Provisional	99.3
TIGR00885	410	fucP L-fucose:H+ symporter permease. This family d	99.3
TIGR00882	396	2A0105 oligosaccharide:H+ symporter.	99.3
TIGR00899	375	2A0120 sugar efflux transporter. This family of pr	99.29
TIGR00900	365	2A0121 H+ Antiporter protein.	99.29
KOG4686	459	consensus Predicted sugar transporter [Carbohydrat	99.29
TIGR00882	396	2A0105 oligosaccharide:H+ symporter.	99.29
PRK09528	420	lacY galactoside permease; Reviewed	99.28
PRK15075	434	citrate-proton symporter; Provisional	99.28
PRK10091	382	MFS transport protein AraJ; Provisional	99.27
PRK11010	491	ampG muropeptide transporter; Validated	99.27
PTZ00207	591	hypothetical protein; Provisional	99.26
TIGR00895	398	2A0115 benzoate transport.	99.26
PRK03893	496	putative sialic acid transporter; Provisional	99.26
PRK11010	491	ampG muropeptide transporter; Validated	99.25
TIGR00891	405	2A0112 putative sialic acid transporter.	99.25
PRK10504	471	putative transporter; Provisional	99.24
COG2814	394	AraJ Arabinose efflux permease [Carbohydrate trans	99.24
TIGR00896	355	CynX cyanate transporter. This family of proteins	99.23
TIGR00887	502	2A0109 phosphate:H+ symporter. This model represen	99.23
TIGR00806	511	rfc RFC reduced folate carrier. Proteins of the RF	99.23
PRK15075	434	citrate-proton symporter; Provisional	99.22
TIGR00805	633	oat sodium-independent organic anion transporter.	99.22
COG2807	395	CynX Cyanate permease [Inorganic ion transport and	99.21
PRK06814	1140	acylglycerophosphoethanolamine acyltransferase; Pr	99.21
PRK10133	438	L-fucose transporter; Provisional	99.2
PRK10213	394	nepI ribonucleoside transporter; Reviewed	99.19
TIGR00898	505	2A0119 cation transport protein.	99.19
PRK15011	393	sugar efflux transporter B; Provisional	99.18
PRK10054	395	putative transporter; Provisional	99.18
COG3104	498	PTR2 Dipeptide/tripeptide permease [Amino acid tra	99.17
TIGR00902	382	2A0127 phenyl proprionate permease family protein.	99.17
KOG3764	464	consensus Vesicular amine transporter [Intracellul	99.17
PRK08633	1146	2-acyl-glycerophospho-ethanolamine acyltransferase	99.16
PRK15402	406	multidrug efflux system translocase MdfA; Provisio	99.16
PRK11902	402	ampG muropeptide transporter; Reviewed	99.15
PRK11646	400	multidrug resistance protein MdtH; Provisional	99.14
TIGR00901	356	2A0125 AmpG-related permease.	99.14
PRK11128	382	putative 3-phenylpropionic acid transporter; Provi	99.14
PRK11902	402	ampG muropeptide transporter; Reviewed	99.11
PRK10429	473	melibiose:sodium symporter; Provisional	99.11
KOG2533	495	consensus Permease of the major facilitator superf	99.11
PRK06814	1140	acylglycerophosphoethanolamine acyltransferase; Pr	99.1
TIGR00885	410	fucP L-fucose:H+ symporter permease. This family d	99.1
PRK10133	438	L-fucose transporter; Provisional	99.09
PF05977	524	MFS_3: Transmembrane secretion effector; InterPro:	99.08
PRK08633	1146	2-acyl-glycerophospho-ethanolamine acyltransferase	99.07
PRK09669	444	putative symporter YagG; Provisional	99.07
KOG0255	521	consensus Synaptic vesicle transporter SVOP and re	99.06
COG2270	438	Permeases of the major facilitator superfamily [Ge	99.06
PF03825	400	Nuc_H_symport: Nucleoside H+ symporter	99.06
TIGR00711	485	efflux_EmrB drug resistance transporter, EmrB/QacA	99.05
PRK09848	448	glucuronide transporter; Provisional	99.05
KOG0569	485	consensus Permease of the major facilitator superf	99.03
PF01306	412	LacY_symp: LacY proton/sugar symporter; InterPro:	99.03
TIGR00710	385	efflux_Bcr_CflA drug resistance transporter, Bcr/C	99.02
COG2223	417	NarK Nitrate/nitrite transporter [Inorganic ion tr	99.01
TIGR00883	394	2A0106 metabolite-proton symporter. This model rep	99.0
PRK11043	401	putative transporter; Provisional	98.99
KOG0253	528	consensus Synaptic vesicle transporter SV2 (major	98.98
PF13347	428	MFS_2: MFS/sugar transport protein	98.97
PF07690	352	MFS_1: Major Facilitator Superfamily; InterPro: IP	98.97
KOG0254	513	consensus Predicted transporter (major facilitator	98.96
PRK14995	495	methyl viologen resistance protein SmvA; Provision	98.93
PRK10473	392	multidrug efflux system protein MdtL; Provisional	98.93
KOG2615	451	consensus Permease of the major facilitator superf	98.93
TIGR00886	366	2A0108 nitrite extrusion protein (nitrite facilita	98.91
TIGR01301	477	GPH_sucrose GPH family sucrose/H+ symporter. This	98.89
KOG2532	466	consensus Permease of the major facilitator superf	98.88
TIGR02718	390	sider_RhtX_FptX siderophore transporter, RhtX/FptX	98.88
TIGR00901	356	2A0125 AmpG-related permease.	98.86
TIGR00792	437	gph sugar (Glycoside-Pentoside-Hexuronide) transpo	98.85
PRK11102	377	bicyclomycin/multidrug efflux system; Provisional	98.84
COG0738	422	FucP Fucose permease [Carbohydrate transport and m	98.84
PRK11462	460	putative transporter; Provisional	98.82
PF05977	524	MFS_3: Transmembrane secretion effector; InterPro:	98.77
KOG2504	509	consensus Monocarboxylate transporter [Carbohydrat	98.77
PRK11652	394	emrD multidrug resistance protein D; Provisional	98.74
PRK11195	393	lysophospholipid transporter LplT; Provisional	98.73
KOG2533	495	consensus Permease of the major facilitator superf	98.72
COG2211	467	MelB Na+/melibiose symporter and related transport	98.7
COG2807	395	CynX Cyanate permease [Inorganic ion transport and	98.63
KOG0252	538	consensus Inorganic phosphate transporter [Inorgan	98.63
TIGR00788	468	fbt folate/biopterin transporter. The only functio	98.62
PRK09669	444	putative symporter YagG; Provisional	98.61
COG0738	422	FucP Fucose permease [Carbohydrate transport and m	98.57
KOG0252	538	consensus Inorganic phosphate transporter [Inorgan	98.55
KOG0569	485	consensus Permease of the major facilitator superf	98.5
TIGR00924	475	yjdL_sub1_fam amino acid/peptide transporter (Pept	98.48
TIGR00926	654	2A1704 Peptide:H+ symporter (also transports b-lac	98.47
KOG3764	464	consensus Vesicular amine transporter [Intracellul	98.43
PF01306	412	LacY_symp: LacY proton/sugar symporter; InterPro:	98.43
TIGR00889	418	2A0110 nucleoside transporter. This family of prot	98.42
PRK15403	413	multidrug efflux system protein MdtM; Provisional	98.41
PRK11462	460	putative transporter; Provisional	98.41
PRK10429	473	melibiose:sodium symporter; Provisional	98.38
PF13347	428	MFS_2: MFS/sugar transport protein	98.37
PF00083	451	Sugar_tr: Sugar (and other) transporter; InterPro:	98.36
PF03209	403	PUCC: PUCC protein; InterPro: IPR004896 This prote	98.29
PF00083	451	Sugar_tr: Sugar (and other) transporter; InterPro:	98.27
TIGR00788	468	fbt folate/biopterin transporter. The only functio	98.24
PRK09848	448	glucuronide transporter; Provisional	98.23
PF05631	354	DUF791: Protein of unknown function (DUF791); Inte	98.21
PRK10207	489	dipeptide/tripeptide permease B; Provisional	98.21
TIGR01301	477	GPH_sucrose GPH family sucrose/H+ symporter. This	98.21
PRK09584	500	tppB putative tripeptide transporter permease; Rev	98.17
PF03825	400	Nuc_H_symport: Nucleoside H+ symporter	98.16
KOG0254	513	consensus Predicted transporter (major facilitator	98.12
KOG3762	618	consensus Predicted transporter [General function	98.07
PF03209	403	PUCC: PUCC protein; InterPro: IPR004896 This prote	98.07
KOG2563	480	consensus Permease of the major facilitator superf	98.05
PF06813	250	Nodulin-like: Nodulin-like; InterPro: IPR010658 Th	98.04
COG2211	467	MelB Na+/melibiose symporter and related transport	98.01
COG0477	338	ProP Permeases of the major facilitator superfamil	97.97
KOG2816	463	consensus Predicted transporter ADD1 (major facili	97.96
KOG0255	521	consensus Synaptic vesicle transporter SVOP and re	97.95
PF06609	599	TRI12: Fungal trichothecene efflux pump (TRI12); I	97.88
KOG0253	528	consensus Synaptic vesicle transporter SV2 (major	97.76
PF03092	433	BT1: BT1 family; InterPro: IPR004324 Members of th	97.75
TIGR00805	633	oat sodium-independent organic anion transporter.	97.74
KOG2325	488	consensus Predicted transporter/transmembrane prot	97.64
KOG1330	493	consensus Sugar transporter/spinster transmembrane	97.61
PF05978	156	UNC-93: Ion channel regulatory protein UNC-93; Int	97.45
PRK03612	521	spermidine synthase; Provisional	97.39
PRK15462	493	dipeptide/tripeptide permease D; Provisional	97.38
PF11700	477	ATG22: Vacuole effluxer Atg22 like; InterPro: IPR0	97.29
PF00854	372	PTR2: POT family; InterPro: IPR000109 This entry r	97.22
PF12832	77	MFS_1_like: MFS_1 like family	97.18
KOG2615	451	consensus Permease of the major facilitator superf	97.14
KOG4686	459	consensus Predicted sugar transporter [Carbohydrat	96.83
TIGR01272	310	gluP glucose/galactose transporter. Disruption of	96.62
PF03137	539	OATP: Organic Anion Transporter Polypeptide (OATP)	96.61
PF02487	402	CLN3: CLN3 protein; InterPro: IPR003492 Batten's d	96.51
TIGR00769	472	AAA ADP/ATP carrier protein family. These proteins	96.44
KOG3626	735	consensus Organic anion transporter [Secondary met	96.39
KOG3098	461	consensus Uncharacterized conserved protein [Funct	96.27
KOG2563	480	consensus Permease of the major facilitator superf	96.26
COG2270	438	Permeases of the major facilitator superfamily [Ge	96.0
PF01770	412	Folate_carrier: Reduced folate carrier; InterPro:	95.97
PF03137	539	OATP: Organic Anion Transporter Polypeptide (OATP)	95.88
TIGR00939	437	2a57 Equilibrative Nucleoside Transporter (ENT).	95.86
COG3104	498	PTR2 Dipeptide/tripeptide permease [Amino acid tra	95.85
KOG2816	463	consensus Predicted transporter ADD1 (major facili	95.39
KOG1237	571	consensus H+/oligopeptide symporter [Amino acid tr	95.14
PF06963	432	FPN1: Ferroportin1 (FPN1); InterPro: IPR009716 Thi	94.89
PF01770	412	Folate_carrier: Reduced folate carrier; InterPro:	94.8
KOG3626	735	consensus Organic anion transporter [Secondary met	94.75
PF07672	267	MFS_Mycoplasma: Mycoplasma MFS transporter; InterP	94.59
PF03092	433	BT1: BT1 family; InterPro: IPR004324 Members of th	94.54
KOG2325	488	consensus Predicted transporter/transmembrane prot	94.18
KOG0637	498	consensus Sucrose transporter and related proteins	93.44
KOG3098	461	consensus Uncharacterized conserved protein [Funct	92.73
KOG3574	510	consensus Acetyl-CoA transporter [Inorganic ion tr	92.54
PF06963	432	FPN1: Ferroportin1 (FPN1); InterPro: IPR009716 Thi	91.61
PF06779	85	DUF1228: Protein of unknown function (DUF1228); In	91.35
KOG4332	454	consensus Predicted sugar transporter [Carbohydrat	90.3
PF01733	309	Nucleoside_tran: Nucleoside transporter; InterPro:	89.95
PF13000	544	Acatn: Acetyl-coenzyme A transporter 1; InterPro:	89.74
PF03219	491	TLC: TLC ATP/ADP transporter; InterPro: IPR004667	89.37
KOG3762	618	consensus Predicted transporter [General function	88.14
KOG3810	433	consensus Micronutrient transporters (folate trans	88.1
TIGR00806	511	rfc RFC reduced folate carrier. Proteins of the RF	85.14
KOG1479	406	consensus Nucleoside transporter [Nucleotide trans	84.83
PF11947	153	DUF3464: Protein of unknown function (DUF3464); In	81.36
PF05631	354	DUF791: Protein of unknown function (DUF791); Inte	80.7

>PTZ00207 hypothetical protein; Provisional

Probab=100.00  E-value=1.3e-36  Score=308.74  Aligned_cols=292  Identities=19%  Similarity=0.280  Sum_probs=230.1

Q ss_pred             eEEeeeccccccchHHHHHHHHHHH-HHHHhh-hhhhhhcccccCCCCCcccccccccCcCcCCCccchhhhhhhccccC
Q 017754            2 LAVLLLEDLEVANQNVLTVLAVGLI-IIILLP-VTIPVVLVFFTEPPPPVEETLLAETNKGEASKSEDYQEEVILSEVED   79 (366)
Q Consensus         2 ~~~~~~~~~~~~~~~~~~~~~~~~~-~ll~~p-l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   79 (366)
                      ++.+++++.++++++.+..++++++ ++|++| +++|++. +.+.++++  +     ++.   +    . .+      +.
T Consensus       260 ~~~~~~~~~~~~~~~~~~~~~~v~~~lll~~p~l~ip~~~-~~~~~~~~--~-----~~~---~----~-~~------~~  317 (591)
T PTZ00207        260 PLQGALVAYLKLGSNFKVGFAVTVIVLTVIFPFMAFPLTT-FDGKRPHD--D-----SDG---K----A-KE------HV  317 (591)
T ss_pred             HHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHhhhHHH-hccCCcCC--C-----ccc---c----c-cc------cc
Confidence            4567788889999999999999888 888889 8888876 22211100  0     000   0    0 00      00


Q ss_pred             CCCCCCCCCCchhHHHHHHHHHHHHHHHhhhhhhhhhhcCCCCCCCCCCHHHHhhhhhHHHHHHHHHHhhhhHHHHHhcH
Q 017754           80 EKPPEVDSLPASERQKRIAHLQAKLFQAAAEGAVRVKRRKGPRRGEDFTLPQALMKADFLLLFFSLVLASGSGLTVIDNL  159 (366)
Q Consensus        80 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ll~~~~~~~~~~~~~~~~~l  159 (366)
                      +...+.+ .++.+.                  ...+.+...|++++  +++|.+++.|||++++.++|+.+++.++++|+
T Consensus       318 ~~~~~~~-~~~~~~------------------~~~~~~~~~P~~~~--t~~q~l~~~d~Wll~~~~~cg~g~gl~~~~N~  376 (591)
T PTZ00207        318 EAGEEVS-AAEDKV------------------VETDVDYIAPQFQE--TFIEGLKTARLWCLLWSIFCCVGAHFVIIFNA  376 (591)
T ss_pred             ccccccc-cccccc------------------ccccccCCCCCCcc--hHHHHHhchhHHHHHHHHHHhhCchheeeecH
Confidence            0000000 000000                  00000112244544  99999999999999999999999999999999


Q ss_pred             HHHHHHh-CC-Chh--HH-HHHHHHHHHhhhhhhhhhhhhhhhhhcc----CchhHHHHHHHHHHHHHHHHHHhhhh-HH
Q 017754          160 GQICQSL-GY-ADT--SI-YVSMISIWNFLGRVGGGYFSEAIVRKFA----YPRPVAMAVAQVVMAFALLYYAIGWP-GE  229 (366)
Q Consensus       160 ~~i~~~~-g~-s~~--~~-~vsl~~i~~~~g~~~~G~lsD~~grr~~----~~R~~~~~~~~~~~~~~~~l~~~~~~-~~  229 (366)
                      .||.+++ |+ .+.  .+ +++++++|+++||++.|+++ .+.+|+.    +||+.++++.++ +.+++++++...+ ..
T Consensus       377 ~qI~~sl~g~~~~~~~~~~~vsL~si~~~~GRl~~g~~~-~~~~~~~~~~r~prt~~l~~~~~-~~~~~lll~~~~p~~~  454 (591)
T PTZ00207        377 RFIYTALAGEAPDDALNTLLTVLNGVGSAVGRLCMSYFE-IWSQKRRAEDRVPITIALFIPSV-CIITMLTLFLTLPKAA  454 (591)
T ss_pred             HHHHHHhcCCCCCccceeeehhhhhHHHHhhHHHHHHHH-HHHHhhccccccchhHHHHHHHH-HHHHHHHHHHHCCccH
Confidence            9999999 88 334  34 89999999999999999998 5555554    899999999999 8999998887777 78


Q ss_pred             HHHHHHHHHHHHhhhhhhHHHHHHHhhCCCchhhHHHHHHhhhhhhHHhhhhHHHHHHHhhhhhhhhhhhhhccCCCCCc
Q 017754          230 IYVTTVLVGLSYGAHWAIVPAAASELFGLKSFGALYNFLTLASPAGSLIFSGVIASGIYDYYAEKQAGLLWKYNGNMLPV  309 (366)
Q Consensus       230 l~~~~~l~G~~~g~~~~~~~~~~se~f~~~~~g~~~g~~~~~~~~G~~i~gp~l~G~l~d~~~~~~~~~~~~~~~~~~~~  309 (366)
                      +|+..+++|+|+|.+|++.+++++|+|+ |++|+.||+..++.++|+++++..++|.+||++++|               
T Consensus       455 L~~~~~lvg~~~G~~~~~~~~i~selFg-k~~g~~yN~~~~a~pigs~~~n~~l~G~~Yd~ea~k---------------  518 (591)
T PTZ00207        455 LPLPYFIAAFANGFMAATIALVTRTIFA-KDPAKHYNFCFLGSVLSAIFLNRLLYGEWYTQQADK---------------  518 (591)
T ss_pred             hHHHHHHHHHHhhHhHHHHHHHHHHHhc-cchHHHhhHHhHHHHHHHHHHHHHHHHHHHHHHHhh---------------
Confidence            9999999999999999999999999999 999999999999999999999999999999999854               


Q ss_pred             ccCCCCCCcccCCcchHHHHHHHHHHHHHHHHHHHHHhhhchHHHHHHh
Q 017754          310 SFRDQETPTCLGSICYSITCGIMAGLCIIAMVMSLIVVHRTKSVYAQLY  358 (366)
Q Consensus       310 ~~~~~~~~~c~g~~~~~~~f~i~~~~~~~~~~~~~~~~~~~r~~~~~~~  358 (366)
                          +++++|+|++||+.+|.+++++|++++++++++..|+|++|++..
T Consensus       519 ----~~~~~C~G~~C~~~~~~v~~~~~~~g~~~s~~l~~R~r~~y~~~~  563 (591)
T PTZ00207        519 ----LGQDVCTERVCVVMPLAFLLGLSFLAFITSTYVHLQYRRLCLKAL  563 (591)
T ss_pred             ----CCCCeeCCceeeHhHHHHHHHHHHHHHHHHhheeeehHHHHHHHH
Confidence                245799999999999999999999999999999999999998653

>PRK11273 glpT sn-glycerol-3-phosphate transporter; Provisional

Probab=99.65  E-value=3.5e-14  Score=141.95  Aligned_cols=194  Identities=15%  Similarity=0.143  Sum_probs=135.8

Q ss_pred             HhhhhhHHHHHHHHHHhhhhHHHHHhcHHHHHHH-hCCChhHH--HHHHHHHHHhhhhhhhhhhhhhhhhhccCchhHHH
Q 017754          132 ALMKADFLLLFFSLVLASGSGLTVIDNLGQICQS-LGYADTSI--YVSMISIWNFLGRVGGGYFSEAIVRKFAYPRPVAM  208 (366)
Q Consensus       132 ~l~~~~~~ll~~~~~~~~~~~~~~~~~l~~i~~~-~g~s~~~~--~vsl~~i~~~~g~~~~G~lsD~~grr~~~~R~~~~  208 (366)
                      .++++.+|.+++..++.....+....++|.+.++ .|++...+  ..+++.++..++++++|+++||+++++..   ...
T Consensus       249 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~P~~l~~~~g~s~~~~~~~~~~~~~~~~~g~~~~G~l~dr~~~~r~~---~~~  325 (452)
T PRK11273        249 VLPNKLLWYIAIANVFVYLLRYGILDWSPTYLKEVKHFALDKSSWAYFLYEYAGIPGTLLCGWMSDKVFRGNRG---ATG  325 (452)
T ss_pred             HHcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCcc---hHH
Confidence            5678899998888777776667778899999876 68876554  56677888899999999999999543221   111


Q ss_pred             HHHHHHHHHHHHHHH---hhhhHHHHHHHHHHHHHHhhhhhhHHHHHHHhhCCCchhhHHHHHHhhhhhhHHhhhhHHHH
Q 017754          209 AVAQVVMAFALLYYA---IGWPGEIYVTTVLVGLSYGAHWAIVPAAASELFGLKSFGALYNFLTLASPAGSLIFSGVIAS  285 (366)
Q Consensus       209 ~~~~~~~~~~~~l~~---~~~~~~l~~~~~l~G~~~g~~~~~~~~~~se~f~~~~~g~~~g~~~~~~~~G~~i~gp~l~G  285 (366)
                      .....+..++.+++.   ..+....+++.+++|.+..+........+.|.+|++.+|++.|+.+....+|+.+.+|.+.|
T Consensus       326 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~~~g~~v~g  405 (452)
T PRK11273        326 VFFMTLVTIATIVYWLNPAGNPTVDMACMIVIGFLIYGPVMLIGLHALELAPKKAAGTAAGFTGLFGYLGGSVAASAIVG  405 (452)
T ss_pred             HHHHHHHHHHHHHHHHhcccChHHHHHHHHHHHHHHHhHHHHHHHHHHHHcChhhhhhHHHHHHHHHHHHHHHhhhhhHH
Confidence            111222222222221   11223333444455554433333444567899999999999999998888887644799999


Q ss_pred             HHHhhhhhhhhhhhhhccCCCCCcccCCCCCCcccCCcchHHHHHHHHHHHHHHHHHHHHHhhhchHHHHHHhhc
Q 017754          286 GIYDYYAEKQAGLLWKYNGNMLPVSFRDQETPTCLGSICYSITCGIMAGLCIIAMVMSLIVVHRTKSVYAQLYGN  360 (366)
Q Consensus       286 ~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~g~~~~~~~f~i~~~~~~~~~~~~~~~~~~~r~~~~~~~~~  360 (366)
                      +++|..+                                |+..|++++++++++++....+...+||..+++..|
T Consensus       406 ~l~~~~g--------------------------------~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  448 (452)
T PRK11273        406 YTVDFFG--------------------------------WDGGFMVMIGGSILAVILLIVVMIGEKRHHEELLQK  448 (452)
T ss_pred             HHHHHhc--------------------------------chHHHHHHHHHHHHHHHHHHHHhccccchHHHHHhh
Confidence            9999987                                999999999999998888877776666666666544

>PRK09556 uhpT sugar phosphate antiporter; Reviewed

Probab=99.64  E-value=3.3e-14  Score=142.67  Aligned_cols=191  Identities=15%  Similarity=0.086  Sum_probs=130.2

Q ss_pred             HhhhhhHHHHHHHHHHhhhhHHHHHhcHHHHHH-HhCCChhHH--HHHHHHHHHhhhhhhhhhhhhhhhhhccCchhHHH
Q 017754          132 ALMKADFLLLFFSLVLASGSGLTVIDNLGQICQ-SLGYADTSI--YVSMISIWNFLGRVGGGYFSEAIVRKFAYPRPVAM  208 (366)
Q Consensus       132 ~l~~~~~~ll~~~~~~~~~~~~~~~~~l~~i~~-~~g~s~~~~--~vsl~~i~~~~g~~~~G~lsD~~grr~~~~R~~~~  208 (366)
                      .++++.+|.+.+..++..........|+|.+.+ .+|++..++  ..++..++..+|++++|+++||++||+..    ..
T Consensus       254 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~p~yl~~~~g~s~~~a~~~~~~~~~~~~ig~~~~G~lsDr~g~r~~~----~~  329 (467)
T PRK09556        254 VLKNPVIWLLCFANIFLYIVRIGIDNWSPVYAFQELGFSKEDAINTFTLFEIGALVGSLLWGWLSDLANGRRAL----VA  329 (467)
T ss_pred             HHcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCchH----HH
Confidence            678999999988888877777778889998875 489987665  67778889999999999999999987543    11


Q ss_pred             HHHHHHHHHHHHHHHh-hhhHHHHHHHHHHHHHHhhhhhhHHHHHHHhhCCCchhhHHHHHHhhhhh-hHHhhhhHHHHH
Q 017754          209 AVAQVVMAFALLYYAI-GWPGEIYVTTVLVGLSYGAHWAIVPAAASELFGLKSFGALYNFLTLASPA-GSLIFSGVIASG  286 (366)
Q Consensus       209 ~~~~~~~~~~~~l~~~-~~~~~l~~~~~l~G~~~g~~~~~~~~~~se~f~~~~~g~~~g~~~~~~~~-G~~i~gp~l~G~  286 (366)
                      ...........+.+.. .+...+++..++.|++..+........+.|.+|.+.+|++.|+.+....+ |+.+ +|.+.|+
T Consensus       330 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~p~~~~g~a~gi~~~~g~l~g~~~-~~~~~G~  408 (467)
T PRK09556        330 CIALALIIFTLGVYQHATSEYMYLASLFALGFLVFGPQLLIGVAAVGFVPKKAIGVANGIKGTFAYLFGDSF-AKVGLGM  408 (467)
T ss_pred             HHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHhhHHHHHHHHHHhhcchhhHHHHHHHHHHHHHHHhHHH-HhhhHHH
Confidence            1111111111122222 23334456666677654444444456777999999999999999999887 6574 9999999


Q ss_pred             HHhhhhhhhhhhhhhccCCCCCcccCCCCCCcccCCcchHHHHHHHHHHHHHHHHHHHHHh
Q 017754          287 IYDYYAEKQAGLLWKYNGNMLPVSFRDQETPTCLGSICYSITCGIMAGLCIIAMVMSLIVV  347 (366)
Q Consensus       287 l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~g~~~~~~~f~i~~~~~~~~~~~~~~~~  347 (366)
                      +.|.+....                    ...-+....|+..|++++++++++++..+.+.
T Consensus       409 i~~~~~~g~--------------------~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~  449 (467)
T PRK09556        409 IADPTKNGT--------------------PIFGYTLTGWAGTFAALDIAAIGCICLMAIVA  449 (467)
T ss_pred             Hhccccccc--------------------ccccccccChHHHHHHHHHHHHHHHHHHHHHH
Confidence            999321000                    00000011399999999888888877766554

>PRK11663 regulatory protein UhpC; Provisional

Probab=99.61  E-value=1.6e-13  Score=136.49  Aligned_cols=183  Identities=18%  Similarity=0.149  Sum_probs=124.5

Q ss_pred             HhhhhhHHHHHHHHHHhhhhHHHHHhcHHHHHH-HhCCChhHH--HHHHHHHHHhhhhhhhhhhhhhhhhhccCchhHHH
Q 017754          132 ALMKADFLLLFFSLVLASGSGLTVIDNLGQICQ-SLGYADTSI--YVSMISIWNFLGRVGGGYFSEAIVRKFAYPRPVAM  208 (366)
Q Consensus       132 ~l~~~~~~ll~~~~~~~~~~~~~~~~~l~~i~~-~~g~s~~~~--~vsl~~i~~~~g~~~~G~lsD~~grr~~~~R~~~~  208 (366)
                      .++++.+|.+.+..++.......+..++|++.+ ++|++..+.  ..+++.+++.+|++++|+++||+.+++........
T Consensus       239 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~l~~~~g~s~~~a~~~~~~~~~~~~~g~~~~g~l~dr~~~~~r~~~~~~~  318 (434)
T PRK11663        239 VLLNPYIWLLSFSYVLVYVVRAAINDWGNLYMSETLGVDLVTANSAVSMFELGGFIGALVAGWGSDKLFNGNRGPMNLIF  318 (434)
T ss_pred             HhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHHHHHHhhhHHHhccCCccHHHHHH
Confidence            567788998877777666666667788999884 578887655  78888899999999999999999543211111111


Q ss_pred             HHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHhhhhhhHHHHHHHhhCCCchhhHHHHHHhhhhhhHHhhhhHHHHHHH
Q 017754          209 AVAQVVMAFALLYYAIGWPGEIYVTTVLVGLSYGAHWAIVPAAASELFGLKSFGALYNFLTLASPAGSLIFSGVIASGIY  288 (366)
Q Consensus       209 ~~~~~~~~~~~~l~~~~~~~~l~~~~~l~G~~~g~~~~~~~~~~se~f~~~~~g~~~g~~~~~~~~G~~i~gp~l~G~l~  288 (366)
                      .++.++..++.+++...+....+...+..|++..+........++|.++++++|+..|+.++...+|..+ +|.+.|++.
T Consensus       319 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~-~p~~~g~l~  397 (434)
T PRK11663        319 AAGILLSVGSLWLMPFASYVMQAACFFTIGFFVFGPQMLIGMAAAECSHKEAAGAATGFVGLFAYLGAAL-SGYPLAKVL  397 (434)
T ss_pred             HHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHhhHHHHHHHHHHhcccHhhHHhHHHHHHHHHHHHHHH-hcccHHHHH
Confidence            2222222222222222222222233333444333333344567789999999999999999999999996 999999999


Q ss_pred             hhhhhhhhhhhhhccCCCCCcccCCCCCCcccCCcchHHHHHHHHHHHHHHHHHHHHHh
Q 017754          289 DYYAEKQAGLLWKYNGNMLPVSFRDQETPTCLGSICYSITCGIMAGLCIIAMVMSLIVV  347 (366)
Q Consensus       289 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~g~~~~~~~f~i~~~~~~~~~~~~~~~~  347 (366)
                      |..+                                |+..|++.+++++++++..+...
T Consensus       398 ~~~g--------------------------------~~~~f~~~~~~~~~~~~~~~~~~  424 (434)
T PRK11663        398 EIWH--------------------------------WTGFFVVISIAAGISALLLLPFL  424 (434)
T ss_pred             Hhcc--------------------------------cHHHHHHHHHHHHHHHHHHHHHH
Confidence            9877                                99999998888777766554443

>PRK10504 putative transporter; Provisional

Probab=99.61  E-value=4.2e-14  Score=141.67  Aligned_cols=175  Identities=17%  Similarity=0.236  Sum_probs=143.0

Q ss_pred             hhHHHHHHHHHHhhhhHHHHHhcHHHHHHHhCCChhHH--HHHHHHHHHhhhhhhhhhhhhhhhhhccCchhHHHHHHHH
Q 017754          136 ADFLLLFFSLVLASGSGLTVIDNLGQICQSLGYADTSI--YVSMISIWNFLGRVGGGYFSEAIVRKFAYPRPVAMAVAQV  213 (366)
Q Consensus       136 ~~~~ll~~~~~~~~~~~~~~~~~l~~i~~~~g~s~~~~--~vsl~~i~~~~g~~~~G~lsD~~grr~~~~R~~~~~~~~~  213 (366)
                      +.+|++++++++.......+..++|.+.+++|.+..+.  ..+.+.++..++.+++|+++||+|||+..      ..+.+
T Consensus        10 ~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~r~~~------~~~~~   83 (471)
T PRK10504         10 WQLWIVAFGFFMQSLDTTIVNTALPSMAQSLGESPLHMHMVIVSYVLTVAVMLPASGWLADRVGVRNIF------FTAIV   83 (471)
T ss_pred             HHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHH------HHHHH
Confidence            35788888888887777778889999999999988764  66777888889999999999999998655      44555


Q ss_pred             HHHHHHHHHH-hhhhHHHHHHHHHHHHHHhhhhhhHHHHHHHhhCCCchhhHHHHHHhhhhhhHHhhhhHHHHHHHhhhh
Q 017754          214 VMAFALLYYA-IGWPGEIYVTTVLVGLSYGAHWAIVPAAASELFGLKSFGALYNFLTLASPAGSLIFSGVIASGIYDYYA  292 (366)
Q Consensus       214 ~~~~~~~l~~-~~~~~~l~~~~~l~G~~~g~~~~~~~~~~se~f~~~~~g~~~g~~~~~~~~G~~i~gp~l~G~l~d~~~  292 (366)
                      +.+++.+++. ..+...+++..++.|++.+...+...+.+.|.++.++++.++++.+....+|..+ ||.++|.+.+..+
T Consensus        84 ~~~~~~~~~~~~~~~~~l~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~-g~~~~g~l~~~~g  162 (471)
T PRK10504         84 LFTLGSLFCALSGTLNELLLARVLQGVGGAMMVPVGRLTVMKIVPREQYMAAMTFVTLPGQVGPLL-GPALGGLLVEYAS  162 (471)
T ss_pred             HHHHHHHHHHHhCCHHHHHHHHHHHHhhhHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHh-hhHHHHHHHhhcc
Confidence            5555555544 3445667888999999999988888999999999999999999999999999996 9999999998776


Q ss_pred             hhhhhhhhhccCCCCCcccCCCCCCcccCCcchHHHHHHHHHHHHHHHHHHHHHhhh
Q 017754          293 EKQAGLLWKYNGNMLPVSFRDQETPTCLGSICYSITCGIMAGLCIIAMVMSLIVVHR  349 (366)
Q Consensus       293 ~~~~~~~~~~~~~~~~~~~~~~~~~~c~g~~~~~~~f~i~~~~~~~~~~~~~~~~~~  349 (366)
                                                      |++.|++...++.++.++.....++
T Consensus       163 --------------------------------w~~~f~~~~~~~~l~~~~~~~~~~~  187 (471)
T PRK10504        163 --------------------------------WHWIFLINIPVGIIGAIATLMLMPN  187 (471)
T ss_pred             --------------------------------HHHHHHHHHHHHHHHHHHHHHhCCC
Confidence                                            9999999888777776666554433

>TIGR00890 2A0111 Oxalate/Formate Antiporter

Probab=99.60  E-value=3.8e-14  Score=136.08  Aligned_cols=174  Identities=26%  Similarity=0.317  Sum_probs=135.4

Q ss_pred             CHHHHhhhhhHHHHHHHHHHhhhhHHHHHhcHHHHHHHhCCChhHH--HHHHHHHHHhhhhhhhhhhhhhhhhhccCchh
Q 017754          128 TLPQALMKADFLLLFFSLVLASGSGLTVIDNLGQICQSLGYADTSI--YVSMISIWNFLGRVGGGYFSEAIVRKFAYPRP  205 (366)
Q Consensus       128 ~~~~~l~~~~~~ll~~~~~~~~~~~~~~~~~l~~i~~~~g~s~~~~--~vsl~~i~~~~g~~~~G~lsD~~grr~~~~R~  205 (366)
                      +.++.++++.+|.+...+++..........+.+++.+++|++....  ..++..+...++++..|+++||++||+..   
T Consensus       197 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~~~~~---  273 (377)
T TIGR00890       197 TVWEMLRTPQFWVLYLSFFLNAVSGLLLIGLYKPYGQSLGLSDGFLVLAVSISSIFNGGGRPFLGALSDKIGRQKTM---  273 (377)
T ss_pred             hHHHHHcCccHHHHHHHHHHHhHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhh---
Confidence            4567888999998877776665555555566777888888876554  77888899999999999999999987655   


Q ss_pred             HHHHHHHHHHHHHHHHHHhhh---hHHHHHHHHHHHHHHhhhhhhHHHHHHHhhCCCchhhHHHHHHhhhhhhHHhhhhH
Q 017754          206 VAMAVAQVVMAFALLYYAIGW---PGEIYVTTVLVGLSYGAHWAIVPAAASELFGLKSFGALYNFLTLASPAGSLIFSGV  282 (366)
Q Consensus       206 ~~~~~~~~~~~~~~~l~~~~~---~~~l~~~~~l~G~~~g~~~~~~~~~~se~f~~~~~g~~~g~~~~~~~~G~~i~gp~  282 (366)
                         ..+.++++++.+++...+   ...++...++.|++.|..++..+.+++|.+|.+++++.+|+.+....+|..+ +|.
T Consensus       274 ---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~~~-~~~  349 (377)
T TIGR00890       274 ---SIVFGISAVGMAAMLFIPMLNDVLFLATVALVFFTWGGTISLFPSLVSDIFGPANSAANYGFLYTAKAVAGIF-GGL  349 (377)
T ss_pred             ---hHHHHHHHHHHHHHHHcccchhHHHHHHHHHHHHHhccchhccHHHHHHHhhhhhhhhHhHHHHHHHHHHHHH-HHH
Confidence               555556666555544222   1223345567788888888888889999999999999999999999999996 999


Q ss_pred             HHHHHHhhhhhhhhhhhhhccCCCCCcccCCCCCCcccCCcchHHHHHHHHHHHHHHH
Q 017754          283 IASGIYDYYAEKQAGLLWKYNGNMLPVSFRDQETPTCLGSICYSITCGIMAGLCIIAM  340 (366)
Q Consensus       283 l~G~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~g~~~~~~~f~i~~~~~~~~~  340 (366)
                      ++|.+.|..+                                |+..|.+.+++++++.
T Consensus       350 ~~g~l~~~~g--------------------------------~~~~f~~~~~~~~~~~  375 (377)
T TIGR00890       350 IASHALTEIG--------------------------------FEYTFIVTGAFALTSL  375 (377)
T ss_pred             HHHHHHhhhc--------------------------------hhhHHHHHHHHHHHhc
Confidence            9999999877                                9999988887666654

>COG2271 UhpC Sugar phosphate permease [Carbohydrate transport and metabolism]

Probab=99.59  E-value=7.8e-14  Score=134.14  Aligned_cols=190  Identities=14%  Similarity=0.126  Sum_probs=146.4

Q ss_pred             HHhhhhhHHHHHHHHHHhhhhHHHHHhcHHHHHHH-hCCChhHH--HHHHHHHHHhhhhhhhhhhhhhhhhhccCchhHH
Q 017754          131 QALMKADFLLLFFSLVLASGSGLTVIDNLGQICQS-LGYADTSI--YVSMISIWNFLGRVGGGYFSEAIVRKFAYPRPVA  207 (366)
Q Consensus       131 ~~l~~~~~~ll~~~~~~~~~~~~~~~~~l~~i~~~-~g~s~~~~--~vsl~~i~~~~g~~~~G~lsD~~grr~~~~R~~~  207 (366)
                      -.++|+..|++.++.++.+..-+++.+|.|.++.+ .|++..++  ..+++-+++..|.+++||+|||+-+.+..   ..
T Consensus       247 YVL~Nk~iW~la~a~vfvYivR~gi~dW~p~YL~e~k~~s~~~a~~a~~lfE~agl~G~Ll~GwlSDklfkgrR~---p~  323 (448)
T COG2271         247 YVLKNKLIWLLALANVFVYVVRYGINDWGPLYLSEVKGFSLVKANWAISLFEVAGLPGTLLAGWLSDKLFKGRRG---PM  323 (448)
T ss_pred             HHHcChHHHHHHHHHHHHHHHHHHHhhhHHHHHHHhcCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcccccc---hH
Confidence            46789999999999999999999999999998865 68887665  89999999999999999999998432222   12


Q ss_pred             HHHHHHHHHHHHHHHH-hh--hhHHHHHHHHHHHHHHhhhhhhHHHHHHHhhCCCchhhHHHHHHhhhhh-hHHhhhhHH
Q 017754          208 MAVAQVVMAFALLYYA-IG--WPGEIYVTTVLVGLSYGAHWAIVPAAASELFGLKSFGALYNFLTLASPA-GSLIFSGVI  283 (366)
Q Consensus       208 ~~~~~~~~~~~~~l~~-~~--~~~~l~~~~~l~G~~~g~~~~~~~~~~se~f~~~~~g~~~g~~~~~~~~-G~~i~gp~l  283 (366)
                      ..+.++...++...+. .+  +.....++.+++|+...+..-+....+.|..|.+..|++.|+......+ |+. ++...
T Consensus       324 ~~i~~~~i~~~~~~~w~~~~~~~~l~~~~l~~iGf~IyGPqmLiGl~a~e~~pK~AaGtA~Gf~Glf~Yl~Ga~-~a~~~  402 (448)
T COG2271         324 ALIFMLLITASLVLYWLAPNGSYLLDAILLFIIGFLIYGPQMLIGLAAAEFVPKKAAGTATGFVGLFAYLIGAA-LAGLP  402 (448)
T ss_pred             HHHHHHHHHHHHHHHHcCCCccHHHHHHHHHHHHHHHhhHHHHHHHHHhccccHhhccchhchhhhHHHHhhHH-hcCCc
Confidence            2333333333333333 22  2345566777888886665566667788999999999999999999999 666 58888


Q ss_pred             HHHHHhhhhhhhhhhhhhccCCCCCcccCCCCCCcccCCcchHHHHHHHHHHHHHHHHHHHHHhhhchHHHHH
Q 017754          284 ASGIYDYYAEKQAGLLWKYNGNMLPVSFRDQETPTCLGSICYSITCGIMAGLCIIAMVMSLIVVHRTKSVYAQ  356 (366)
Q Consensus       284 ~G~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~g~~~~~~~f~i~~~~~~~~~~~~~~~~~~~r~~~~~  356 (366)
                      .|++.|.++                                |...|.++.+.++++.++.+.+..+.++.+++
T Consensus       403 ~g~i~d~~g--------------------------------W~g~Fi~~~~~a~l~~lll~~~~~~~~~~~~~  443 (448)
T COG2271         403 LGYIADTWG--------------------------------WDGGFIVLSIAALLAILLLLPVWNAEERKIRD  443 (448)
T ss_pred             ceeeEecCC--------------------------------CcchHHHHHHHHHHHHHHHHHHHhhcchhhhh
Confidence            999999876                                99999999998988888887777666555543

>PRK11663 regulatory protein UhpC; Provisional

Probab=99.59  E-value=9.2e-14  Score=138.18  Aligned_cols=172  Identities=10%  Similarity=0.149  Sum_probs=137.2

Q ss_pred             hhHHHHHHHHHHhhhhHHHHHhcHHHHHHHhCCChhHH--HHHHHHHHHhhhhhhhhhhhhhhhhhccCchhHHHHHHHH
Q 017754          136 ADFLLLFFSLVLASGSGLTVIDNLGQICQSLGYADTSI--YVSMISIWNFLGRVGGGYFSEAIVRKFAYPRPVAMAVAQV  213 (366)
Q Consensus       136 ~~~~ll~~~~~~~~~~~~~~~~~l~~i~~~~g~s~~~~--~vsl~~i~~~~g~~~~G~lsD~~grr~~~~R~~~~~~~~~  213 (366)
                      ..++..++.+++.......+...+|++.+++|++..+.  ..+.+.++..++++..|+++||+|||+.+      .++.+
T Consensus        23 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~G~l~dr~g~r~~~------~~~~~   96 (434)
T PRK11663         23 HILITMYLGYALFYFTRKSFNAAMPEMLADLGLSRSDIGLLATLFYITYGVSKFVSGIVSDRSNARYFM------GIGLI   96 (434)
T ss_pred             HHHHHHHHHHHHHHHhhhhHHHhhHHHHHhcCCCHHHHHHHHHHHHHHHHHHHhhhhHHHhhcCCchhH------HHHHH
Confidence            34455556666666555566778999999999987765  78888999999999999999999998765      66677


Q ss_pred             HHHHHHHHHH-hhhhHHHHHHHHHHHHHHhhhhhhHHHHHHHhhCCCchhhHHHHHHhhhhhhHHhhhhHHHHHHHhhhh
Q 017754          214 VMAFALLYYA-IGWPGEIYVTTVLVGLSYGAHWAIVPAAASELFGLKSFGALYNFLTLASPAGSLIFSGVIASGIYDYYA  292 (366)
Q Consensus       214 ~~~~~~~l~~-~~~~~~l~~~~~l~G~~~g~~~~~~~~~~se~f~~~~~g~~~g~~~~~~~~G~~i~gp~l~G~l~d~~~  292 (366)
                      +.+++.++.. ..+...+++..++.|++.|..++...+++++.++.++++++.++.+.+..+|+.+ +|.+.|++.+..+
T Consensus        97 ~~~~~~~~~~~~~~~~~l~~~~~l~g~~~g~~~~~~~~~~~~~~~~~~rg~~~~~~~~~~~~g~~~-~~~~~~~l~~~~g  175 (434)
T PRK11663         97 ATGIINILFGFSSSLWAFALLWVLNAFFQGWGWPVCAKLLTAWYSRTERGGWWAIWNTAHNVGGAL-IPLVVGAIALHYG  175 (434)
T ss_pred             HHHHHHHHHHHHhHHHHHHHHHHHHHHHHHccchHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHccc
Confidence            7777666655 3345566677788899888888888889999999999999999999999999996 9999999988766


Q ss_pred             hhhhhhhhhccCCCCCcccCCCCCCcccCCcchHHHHHHHHHHHHHHHHHHHHH
Q 017754          293 EKQAGLLWKYNGNMLPVSFRDQETPTCLGSICYSITCGIMAGLCIIAMVMSLIV  346 (366)
Q Consensus       293 ~~~~~~~~~~~~~~~~~~~~~~~~~~c~g~~~~~~~f~i~~~~~~~~~~~~~~~  346 (366)
                                                      |++.|++.++++++.++...+.
T Consensus       176 --------------------------------w~~~f~~~~i~~~~~~~~~~~~  197 (434)
T PRK11663        176 --------------------------------WRYGMMIAGIIAIVVGLFLCWR  197 (434)
T ss_pred             --------------------------------HHHHHHHHHHHHHHHHHHHHHH
Confidence                                            9999998887766554444433

>PRK03545 putative arabinose transporter; Provisional

Probab=99.58  E-value=9.3e-14  Score=135.90  Aligned_cols=171  Identities=11%  Similarity=0.124  Sum_probs=134.5

Q ss_pred             HHHHHHHHHHhhhhHHHHHhcHHHHHHHhCCChhHH--HHHHHHHHHhhhhhhhhhhhhhhhhhccCchhHHHHHHHHHH
Q 017754          138 FLLLFFSLVLASGSGLTVIDNLGQICQSLGYADTSI--YVSMISIWNFLGRVGGGYFSEAIVRKFAYPRPVAMAVAQVVM  215 (366)
Q Consensus       138 ~~ll~~~~~~~~~~~~~~~~~l~~i~~~~g~s~~~~--~vsl~~i~~~~g~~~~G~lsD~~grr~~~~R~~~~~~~~~~~  215 (366)
                      +|.+.++.++...........+|++.+++|.+..+.  ..+.+.++..++.+..|+++||+|||+.+      ..+.++.
T Consensus        11 ~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~------~~~~~~~   84 (390)
T PRK03545         11 VVTLALAAFIFNTTEFVPVGLLSDIAQSFHMQTAQVGLMLTIYAWVVALMSLPLMLLTSNVERRKLL------IGLFVLF   84 (390)
T ss_pred             HHHHHHHHHHHHhHHHHHHcchHHHHhHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHcCCChHHHH------HHHHHHH
Confidence            444444433332233334456899999999988776  77888888899999999999999998765      6667777


Q ss_pred             HHHHHHHH-hhhhHHHHHHHHHHHHHHhhhhhhHHHHHHHhhCCCchhhHHHHHHhhhhhhHHhhhhHHHHHHHhhhhhh
Q 017754          216 AFALLYYA-IGWPGEIYVTTVLVGLSYGAHWAIVPAAASELFGLKSFGALYNFLTLASPAGSLIFSGVIASGIYDYYAEK  294 (366)
Q Consensus       216 ~~~~~l~~-~~~~~~l~~~~~l~G~~~g~~~~~~~~~~se~f~~~~~g~~~g~~~~~~~~G~~i~gp~l~G~l~d~~~~~  294 (366)
                      +++.++.. ..+...+++++++.|++.+..++...++++|+++.++|+.+.|+...+..+|..+ +|.+++.+.+..+  
T Consensus        85 ~~~~~~~~~~~~~~~l~~~r~~~G~~~~~~~~~~~~~i~~~~~~~~r~~~~g~~~~~~~~g~~i-g~~l~~~l~~~~g--  161 (390)
T PRK03545         85 IASHVLSALAWNFTVLLISRIGIAFAHAIFWSITASLAIRVAPAGKKAQALSLLATGTALAMVL-GLPLGRVIGQYLG--  161 (390)
T ss_pred             HHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCChhhhhhHHHHHHHHHHHHHHH-HhhHHHHHHHHhc--
Confidence            77766655 4556678888899999988888888889999999999999999999999999996 9999999988776  


Q ss_pred             hhhhhhhccCCCCCcccCCCCCCcccCCcchHHHHHHHHHHHHHHHHHHHHHh
Q 017754          295 QAGLLWKYNGNMLPVSFRDQETPTCLGSICYSITCGIMAGLCIIAMVMSLIVV  347 (366)
Q Consensus       295 ~~~~~~~~~~~~~~~~~~~~~~~~c~g~~~~~~~f~i~~~~~~~~~~~~~~~~  347 (366)
                                                    |++.|++.++++++..+......
T Consensus       162 ------------------------------w~~~f~~~~~~~~l~~~~~~~~~  184 (390)
T PRK03545        162 ------------------------------WRTTFLAIGGGALITLLLLIKLL  184 (390)
T ss_pred             ------------------------------HHHHHHHHHHHHHHHHHHHHHhC
Confidence                                          99999999988777665554443

>TIGR02332 HpaX 4-hydroxyphenylacetate permease

Probab=99.58  E-value=7.7e-14  Score=137.90  Aligned_cols=180  Identities=12%  Similarity=0.055  Sum_probs=139.6

Q ss_pred             hHHHHHHHHHHhhhhHHHHHhcHHHHHHHhCCChhHH--HHHHHHHHHhhhhhhhhhhhhhhhhhccCchhHHHHHHHHH
Q 017754          137 DFLLLFFSLVLASGSGLTVIDNLGQICQSLGYADTSI--YVSMISIWNFLGRVGGGYFSEAIVRKFAYPRPVAMAVAQVV  214 (366)
Q Consensus       137 ~~~ll~~~~~~~~~~~~~~~~~l~~i~~~~g~s~~~~--~vsl~~i~~~~g~~~~G~lsD~~grr~~~~R~~~~~~~~~~  214 (366)
                      .++++++.+++.+..........|.+.+++|.+..+.  ..+.+.++..++.+..|+++||+|||+.+      .++.++
T Consensus         9 ~~~~~~~~~~~~~~d~~~~~~~~~~l~~~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~G~r~~~------~~~~~~   82 (412)
T TIGR02332         9 LIIFLFILFIFSFLDRINIGFAGLTMGKDLGLSATMFGLAATLFYAAYVICGIPSNIMLAIIGARRWI------AGIMVL   82 (412)
T ss_pred             HHHHHHHHHHHHHhhhhhHHHHHHhhHhhcCCCHHHHHHHHHHHHHHHHHHHhhHHHHHHHhChHHHH------HHHHHH
Confidence            3455566666666666666667788889999988776  78889999999999999999999998765      666667


Q ss_pred             HHHHHHHHH-hhhhHHHHHHHHHHHHHHhhhhhhHHHHHHHhhCCCchhhHHHHHHhhhhhhHHhhhhHHHHHHHhhhhh
Q 017754          215 MAFALLYYA-IGWPGEIYVTTVLVGLSYGAHWAIVPAAASELFGLKSFGALYNFLTLASPAGSLIFSGVIASGIYDYYAE  293 (366)
Q Consensus       215 ~~~~~~l~~-~~~~~~l~~~~~l~G~~~g~~~~~~~~~~se~f~~~~~g~~~g~~~~~~~~G~~i~gp~l~G~l~d~~~~  293 (366)
                      .+++.++.+ ..+...+++.+++.|++.++.++....+++|.+++++|+.+.++.+...++|..+ +|.+++++.+..+ 
T Consensus        83 ~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~~~~~~~~~~rg~~~~~~~~~~~~g~~~-~~~~~~~l~~~~~-  160 (412)
T TIGR02332        83 WGIASTATMFATGPESLYLLRILVGIAEAGFLPGILLYLTFWFPAYFRARANALFMIAMPVTMAL-GLILSGYILALDG-  160 (412)
T ss_pred             HHHHHHHHHHhcCHHHHHHHHHHHHHHHhhHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHhCCC-
Confidence            676666655 3556678889999999999988888888999999999999999999999999996 9999998875321 


Q ss_pred             hhhhhhhhccCCCCCcccCCCCCCcccCCcchHHHHHHHHHHHHHHHHHHHHHhhh
Q 017754          294 KQAGLLWKYNGNMLPVSFRDQETPTCLGSICYSITCGIMAGLCIIAMVMSLIVVHR  349 (366)
Q Consensus       294 ~~~~~~~~~~~~~~~~~~~~~~~~~c~g~~~~~~~f~i~~~~~~~~~~~~~~~~~~  349 (366)
                                               ..+...||++|++.++.+++.+++..++.++
T Consensus       161 -------------------------~~~~~gwr~~f~~~~~~~l~~~~~~~~~~~~  191 (412)
T TIGR02332       161 -------------------------LMALKGWQWLFLLEGFPSVILGVMTWFWLDD  191 (412)
T ss_pred             -------------------------CCCccchhHHHHHHHHHHHHHHHHHhhccCC
Confidence                                     0000129999999887777665555554443

This protein is a part of the Major Facilitator Superfamily (Pfam family pfam07690). Member of this family are found in a number of proteobacterial genomes, but only in the context of having genes for 4-hydroxyphenylacetate (4-HPA) degradation. The protein is characterized by Prieto, et al. (PubMed:9315705) as 4-hydroxyphenylacetate permease in E. coli, where 3-HPA and 3,4-dihydroxyphenylacetate are shown to competitively inhibit 4-HPA transport and therefore also interact specificially.

>COG2814 AraJ Arabinose efflux permease [Carbohydrate transport and metabolism]

Probab=99.58  E-value=1.5e-13  Score=132.95  Aligned_cols=173  Identities=14%  Similarity=0.178  Sum_probs=154.7

Q ss_pred             hHHHHHHHHHHhhhhHHHHHhcHHHHHHHhCCChhHH--HHHHHHHHHhhhhhhhhhhhhhhhhhccCchhHHHHHHHHH
Q 017754          137 DFLLLFFSLVLASGSGLTVIDNLGQICQSLGYADTSI--YVSMISIWNFLGRVGGGYFSEAIVRKFAYPRPVAMAVAQVV  214 (366)
Q Consensus       137 ~~~ll~~~~~~~~~~~~~~~~~l~~i~~~~g~s~~~~--~vsl~~i~~~~g~~~~G~lsD~~grr~~~~R~~~~~~~~~~  214 (366)
                      ..+.+.++.|+.....+.....+|++.+++|.+...+  .++.+..+..++.++...++||+.||+..      ...+.+
T Consensus        14 ~l~aLa~~~F~igttEfv~~gLLp~iA~dl~vs~~~aG~lis~yAl~~ai~ap~l~~lt~r~~Rr~lL------l~~l~l   87 (394)
T COG2814          14 ALLALALAAFAIGTTEFVPVGLLPPIAADLGVSEGAAGQLITAYALGVALGAPLLALLTGRLERRRLL------LGLLAL   87 (394)
T ss_pred             HHHHHHHHHHHHHhHHHHHHhchHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHcccchHHHH------HHHHHH
Confidence            4566667777777777888899999999999998776  99999999999999999999999888765      777888


Q ss_pred             HHHHHHHHH-hhhhHHHHHHHHHHHHHHhhhhhhHHHHHHHhhCCCchhhHHHHHHhhhhhhHHhhhhHHHHHHHhhhhh
Q 017754          215 MAFALLYYA-IGWPGEIYVTTVLVGLSYGAHWAIVPAAASELFGLKSFGALYNFLTLASPAGSLIFSGVIASGIYDYYAE  293 (366)
Q Consensus       215 ~~~~~~l~~-~~~~~~l~~~~~l~G~~~g~~~~~~~~~~se~f~~~~~g~~~g~~~~~~~~G~~i~gp~l~G~l~d~~~~  293 (366)
                      +.++.++.+ .++...+.+++++.|+..|..|++..++++++.|+++++.+.++++++..++..+ |.+++.++-|..| 
T Consensus        88 Fi~~n~l~alAp~f~~Ll~aR~~~g~a~G~f~~i~~~~a~~lvpp~~~~~Aiaiv~~G~tlA~v~-GvPLGt~ig~~~G-  165 (394)
T COG2814          88 FIVSNLLSALAPSFAVLLLARALAGLAHGVFWSIAAALAARLVPPGKRGRALALVFTGLTLATVL-GVPLGTFLGQLFG-  165 (394)
T ss_pred             HHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCccchhhHHHHHHHHHHHHHHH-hccHHHHHHHHhh-
Confidence            888888877 4567788999999999999999999999999999999999999999999999996 9999999999998 


Q ss_pred             hhhhhhhhccCCCCCcccCCCCCCcccCCcchHHHHHHHHHHHHHHHHHHHHHhh
Q 017754          294 KQAGLLWKYNGNMLPVSFRDQETPTCLGSICYSITCGIMAGLCIIAMVMSLIVVH  348 (366)
Q Consensus       294 ~~~~~~~~~~~~~~~~~~~~~~~~~c~g~~~~~~~f~i~~~~~~~~~~~~~~~~~  348 (366)
                                                     ||.+|++.+++++++.+..+...+
T Consensus       166 -------------------------------WR~~F~~ia~l~ll~~~~~~~~lP  189 (394)
T COG2814         166 -------------------------------WRATFLAIAVLALLALLLLWKLLP  189 (394)
T ss_pred             -------------------------------HHHHHHHHHHHHHHHHHHHHHhCC
Confidence                                           999999999999998887777666

>TIGR00893 2A0114 d-galactonate transporter

Probab=99.58  E-value=4.8e-13  Score=128.74  Aligned_cols=187  Identities=14%  Similarity=0.090  Sum_probs=130.6

Q ss_pred             CCHHHHhhhhhHHHHHHHHHHhhhhHHHHHhcHHHHHHH-hCCChhHH--HHHHHHHHHhhhhhhhhhhhhhhhhhccCc
Q 017754          127 FTLPQALMKADFLLLFFSLVLASGSGLTVIDNLGQICQS-LGYADTSI--YVSMISIWNFLGRVGGGYFSEAIVRKFAYP  203 (366)
Q Consensus       127 ~~~~~~l~~~~~~ll~~~~~~~~~~~~~~~~~l~~i~~~-~g~s~~~~--~vsl~~i~~~~g~~~~G~lsD~~grr~~~~  203 (366)
                      .+.++.++++++|.+.+..++.......+..++|++.++ +|++....  ..+...+++.++++++|+++||++||+...
T Consensus       206 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~  285 (399)
T TIGR00893       206 YQIKELLKDRRVWGLALGQFLVNIGLGFFLTWFPTYLVQERGLSILEAGFMASLPGIVGFIGMILGGRLSDLLLRRGKSL  285 (399)
T ss_pred             cchHHHhcCHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhcccHHHhhHHHHHHHHHHHHHHHHHHHHHHHHhhcccch
Confidence            346778889999988888888777777788888988754 68876554  677788899999999999999999986220


Q ss_pred             --hhHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHhhhhhhHHHHHHHhhCCCchhhHHHHHHhhhhhhHHhhhh
Q 017754          204 --RPVAMAVAQVVMAFALLYYAIGWPGEIYVTTVLVGLSYGAHWAIVPAAASELFGLKSFGALYNFLTLASPAGSLIFSG  281 (366)
Q Consensus       204 --R~~~~~~~~~~~~~~~~l~~~~~~~~l~~~~~l~G~~~g~~~~~~~~~~se~f~~~~~g~~~g~~~~~~~~G~~i~gp  281 (366)
                        .......+.++..+..............+...+.+.+..+..+...++++|.+|++++|+.+++.+....+|..+ +|
T Consensus       286 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~g~~~-~~  364 (399)
T TIGR00893       286 VFARKTAIIAGLVLSLLMFATNYVNIPYAALALVALGFFGLGAGAIGWALISDNAPGNIAGLTGGLINSLGNLGGIV-GP  364 (399)
T ss_pred             hHHHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHhchhhhhHHHHHHHhhcChhHHHHHHHHHHHHHHHhhhh-hh
Confidence              000111111111111111111112222333333333333367888889999999999999999999999999996 99


Q ss_pred             HHHHHHHhhhhhhhhhhhhhccCCCCCcccCCCCCCcccCCcchHHHHHHHHHHHHHHHHHHHH
Q 017754          282 VIASGIYDYYAEKQAGLLWKYNGNMLPVSFRDQETPTCLGSICYSITCGIMAGLCIIAMVMSLI  345 (366)
Q Consensus       282 ~l~G~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~g~~~~~~~f~i~~~~~~~~~~~~~~  345 (366)
                      .+.|++.|..+                               +|+..|++.+++++++.+..++
T Consensus       365 ~i~g~l~~~~g-------------------------------~~~~~~~~~~~~~~~~~~~~~~  397 (399)
T TIGR00893       365 IVIGAIAATTG-------------------------------SFAGALMVVAALALIGALSYLL  397 (399)
T ss_pred             HHhhhhccCCC-------------------------------chhHHHHHHHHHHHHHHHHHHH
Confidence            99999999875                               3888998888877777665543

>KOG2504 consensus Monocarboxylate transporter [Carbohydrate transport and metabolism]

Probab=99.57  E-value=1.1e-13  Score=140.00  Aligned_cols=182  Identities=22%  Similarity=0.292  Sum_probs=155.6

Q ss_pred             HHHhhhhhHHHHHHHHHHhhhhHHHHHhcHHHHHHHhCCChhHH--HHHHHHHHHhhhhhhhhhhhhhhhhhccCchhHH
Q 017754          130 PQALMKADFLLLFFSLVLASGSGLTVIDNLGQICQSLGYADTSI--YVSMISIWNFLGRVGGGYFSEAIVRKFAYPRPVA  207 (366)
Q Consensus       130 ~~~l~~~~~~ll~~~~~~~~~~~~~~~~~l~~i~~~~g~s~~~~--~vsl~~i~~~~g~~~~G~lsD~~grr~~~~R~~~  207 (366)
                      .+.++++.|+++.+...+...........+|.+.++.|+++...  .+++.++.+.+||++.|+++|+...    ++.+.
T Consensus       292 ~~ll~~~~fl~~~~~~~~~~~g~~~p~~~l~~~~~~~g~~~~~aa~l~Siigi~~i~gRi~~G~laD~~~~----~~~~~  367 (509)
T KOG2504|consen  292 LSLLKDPKFLLLALSNLFAYLGFNVPFVYLPSYAKSLGLSSNDAAFLLSIIGVSDIIGRIILGLLADKPGI----RALVL  367 (509)
T ss_pred             HHHHcCchHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCChhhhHHHHHHHHHhhhhhhhhhhhhcCcccc----chHHH
Confidence            47889999999999988888888888889999999999988766  8999999999999999999999863    23345


Q ss_pred             HHHHHHHHHHHHHHHHh-hhhHHHHHHHHHHHHHHhhhhhhHHHHHHHhhCCCchhhHHHHHHhhhhhhHHhhhhHHHHH
Q 017754          208 MAVAQVVMAFALLYYAI-GWPGEIYVTTVLVGLSYGAHWAIVPAAASELFGLKSFGALYNFLTLASPAGSLIFSGVIASG  286 (366)
Q Consensus       208 ~~~~~~~~~~~~~l~~~-~~~~~l~~~~~l~G~~~g~~~~~~~~~~se~f~~~~~g~~~g~~~~~~~~G~~i~gp~l~G~  286 (366)
                      ..++.++.+++.+.+.. .+...+....+++|++.|...++.+.++.|+.+.+.+..++|+..+...++.++ ||+++|+
T Consensus       368 ~~~~ll~~gl~~~~~p~~~~~~~l~~~~~~fG~~~g~~~~l~~~i~~~~~g~~~l~~a~Gl~l~~~gi~~l~-gpPiag~  446 (509)
T KOG2504|consen  368 FLLTLLIAGLARLFLPFATTYVGLIVFSILFGFCVGSFSSLTPVILVDLVGLEKLSNAYGLLLLFQGIGALV-GPPIAGL  446 (509)
T ss_pred             HHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcChhhcchHHHHHHHHhHHHHHc-Cccccee
Confidence            56677777777655553 344577888899999999999988889999999999999999999999999996 9999999


Q ss_pred             HHhhhhhhhhhhhhhccCCCCCcccCCCCCCcccCCcchHHHHHHHHHHHHHHHHHHHHHh
Q 017754          287 IYDYYAEKQAGLLWKYNGNMLPVSFRDQETPTCLGSICYSITCGIMAGLCIIAMVMSLIVV  347 (366)
Q Consensus       287 l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~g~~~~~~~f~i~~~~~~~~~~~~~~~~  347 (366)
                      ++|.++                               +|...|+..+++.+++.++.++..
T Consensus       447 ~~d~tg-------------------------------~Y~~~f~~~g~~~~~s~~~~~~~~  476 (509)
T KOG2504|consen  447 LYDITG-------------------------------NYDHAFYFCGLCFLLSAVLLLILR  476 (509)
T ss_pred             eeeccC-------------------------------CeeeehhhcChHHHHHHHHHHHhH
Confidence            999998                               499999999988888777766655

>PRK14995 methyl viologen resistance protein SmvA; Provisional

Probab=99.57  E-value=1.4e-13  Score=139.30  Aligned_cols=173  Identities=11%  Similarity=0.091  Sum_probs=141.5

Q ss_pred             HHHHHHHHHHhhhhHHHHHhcHHHHHHHhCCChhHH--HHHHHHHHHhhhhhhhhhhhhhhhhhccCchhHHHHHHHHHH
Q 017754          138 FLLLFFSLVLASGSGLTVIDNLGQICQSLGYADTSI--YVSMISIWNFLGRVGGGYFSEAIVRKFAYPRPVAMAVAQVVM  215 (366)
Q Consensus       138 ~~ll~~~~~~~~~~~~~~~~~l~~i~~~~g~s~~~~--~vsl~~i~~~~g~~~~G~lsD~~grr~~~~R~~~~~~~~~~~  215 (366)
                      +..+.+++++.......+...+|++.+++|.+..+.  ..+.+.++..++.+.+|+++||+|||+.+      ..+.++.
T Consensus         8 ~~~~~~~~~~~~ld~tiv~~a~p~i~~~l~~s~~~~~~~~~~~~l~~~~~~~~~G~l~D~~Grk~~l------~~~~~~~   81 (495)
T PRK14995          8 LVIIVLVYIPVAIDATVLHVAAPTLSMTLGASGNELLWIIDIYSLVMAGMVLPMGALGDRIGFKRLL------MLGGTLF   81 (495)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHH------HHHHHHH
Confidence            445566777777777778888999999999876554  78888899999999999999999998776      6777777


Q ss_pred             HHHHHHHH-hhhhHHHHHHHHHHHHHHhhhhhhHHHHHHHhh-CCCchhhHHHHHHhhhhhhHHhhhhHHHHHHHhhhhh
Q 017754          216 AFALLYYA-IGWPGEIYVTTVLVGLSYGAHWAIVPAAASELF-GLKSFGALYNFLTLASPAGSLIFSGVIASGIYDYYAE  293 (366)
Q Consensus       216 ~~~~~l~~-~~~~~~l~~~~~l~G~~~g~~~~~~~~~~se~f-~~~~~g~~~g~~~~~~~~G~~i~gp~l~G~l~d~~~~  293 (366)
                      .++.++++ ..+...+++++++.|+|.+...+.....+.+.+ ++++|+.+.|+......+|..+ ||.++|++.+..+ 
T Consensus        82 ~~~~~~~~~a~~~~~li~~r~l~G~g~~~~~~~~~~~l~~~~~~~~~r~~~~g~~~~~~~~g~~~-gp~lgg~l~~~~g-  159 (495)
T PRK14995         82 GLASLAAAFSPTASWLIATRALLAIGAAMIVPATLAGIRATFTEEKQRNMALGVWAAVGSGGAAF-GPLVGGILLEHFY-  159 (495)
T ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHH-HHHHHHHhhccCC-
Confidence            77777766 456677888999999999887777777777776 5688999999999999999996 9999999998876 


Q ss_pred             hhhhhhhhccCCCCCcccCCCCCCcccCCcchHHHHHHHHHHHHHHHHHHHHHhhh
Q 017754          294 KQAGLLWKYNGNMLPVSFRDQETPTCLGSICYSITCGIMAGLCIIAMVMSLIVVHR  349 (366)
Q Consensus       294 ~~~~~~~~~~~~~~~~~~~~~~~~~c~g~~~~~~~f~i~~~~~~~~~~~~~~~~~~  349 (366)
                                                     ||+.|++...+++++.++.....++
T Consensus       160 -------------------------------wr~~f~i~~~~~~~~~~l~~~~l~~  184 (495)
T PRK14995        160 -------------------------------WGSVFLINVPIVLVVMGLTARYVPR  184 (495)
T ss_pred             -------------------------------hHHHHHHHHHHHHHHHHHHHHhCCC
Confidence                                           9999999888877776665555443

>TIGR01299 synapt_SV2 synaptic vesicle protein SV2

Probab=99.57  E-value=1.7e-13  Score=143.74  Aligned_cols=163  Identities=16%  Similarity=0.143  Sum_probs=123.2

Q ss_pred             HHHhcHHHHHHHhCCChhHH--HHHHHHHHHhhhhhhhhhhhhhhhhhccCchhHHHHHHHHHHHHHHHHHH-hhhhHHH
Q 017754          154 TVIDNLGQICQSLGYADTSI--YVSMISIWNFLGRVGGGYFSEAIVRKFAYPRPVAMAVAQVVMAFALLYYA-IGWPGEI  230 (366)
Q Consensus       154 ~~~~~l~~i~~~~g~s~~~~--~vsl~~i~~~~g~~~~G~lsD~~grr~~~~R~~~~~~~~~~~~~~~~l~~-~~~~~~l  230 (366)
                      .+...+|.+.+++|.+....  +.+.+.++.++|.+++|+++||+|||+.+      .++.++.+++.++.+ ..+...+
T Consensus       185 ~is~ilp~i~~~~gls~~~~g~l~s~~~lG~iiG~li~G~LsDR~GRR~~l------ii~lil~~i~~ll~afa~s~~~l  258 (742)
T TIGR01299       185 VVGFVLPSAEKDLCIPDSGKGMLGLIVYLGMMVGAFFWGGLADKLGRKQCL------LICLSVNGFFAFFSSFVQGYGFF  258 (742)
T ss_pred             HHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcHHHH------HHHHHHHHHHHHHHHHHhhHHHH
Confidence            35556788888999887654  78888999999999999999999998765      455555555555544 3455678


Q ss_pred             HHHHHHHHHHHhhhhhhHHHHHHHhhCCCchhhHHHHHHhhhhhhHHhhhhHHHHHHHhhhhhhhhhhhhhccCCCCCcc
Q 017754          231 YVTTVLVGLSYGAHWAIVPAAASELFGLKSFGALYNFLTLASPAGSLIFSGVIASGIYDYYAEKQAGLLWKYNGNMLPVS  310 (366)
Q Consensus       231 ~~~~~l~G~~~g~~~~~~~~~~se~f~~~~~g~~~g~~~~~~~~G~~i~gp~l~G~l~d~~~~~~~~~~~~~~~~~~~~~  310 (366)
                      ++++++.|++.|+..+..+++++|++|.+.||..++++.+...+|..+ ++.+++.+....+...               
T Consensus       259 lv~R~l~G~g~g~~~p~~~~~isE~~p~~~Rg~~~g~~~~~~~iG~il-a~~la~~il~~~G~~~---------------  322 (742)
T TIGR01299       259 LFCRLLSGFGIGGAIPIVFSYFAEFLAQEKRGEHLSWLCMFWMIGGIY-AAAMAWAIIPHYGWSF---------------  322 (742)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHhccchh---------------
Confidence            889999999999999999999999999999999999999999999996 8888877765543110               


Q ss_pred             cCCCCCCcccCCcchHHHHHHHHHHHHHHHHH
Q 017754          311 FRDQETPTCLGSICYSITCGIMAGLCIIAMVM  342 (366)
Q Consensus       311 ~~~~~~~~c~g~~~~~~~f~i~~~~~~~~~~~  342 (366)
                       ..   ...+....||+.|++.++.++++.++
T Consensus       323 -~~---g~~~~~~gWR~l~~i~~lp~ll~ll~  350 (742)
T TIGR01299       323 -QM---GSAYQFHSWRVFVIVCAFPCVFAIGA  350 (742)
T ss_pred             -cc---ccccccccHHHHHHHHHHHHHHHHHH
Confidence             00   01122345999888777655555443

This model describes a tightly conserved subfamily of the larger family of sugar (and other) transporters described by pfam model pfam00083. Members of this subfamily include closely related forms SV2A and SV2B of synaptic vesicle protein from vertebrates and a more distantly related homolog (below trusted cutoff) from Drosophila melanogaster. Members are predicted to have two sets of six transmembrane helices.

>PRK10213 nepI ribonucleoside transporter; Reviewed

Probab=99.57  E-value=2.1e-13  Score=134.06  Aligned_cols=153  Identities=12%  Similarity=0.173  Sum_probs=127.7

Q ss_pred             hHHHHHhcHHHHHHHhCCChhHH--HHHHHHHHHhhhhhhhhhhhhhhhhhccCchhHHHHHHHHHHHHHHHHHH-hhhh
Q 017754          151 SGLTVIDNLGQICQSLGYADTSI--YVSMISIWNFLGRVGGGYFSEAIVRKFAYPRPVAMAVAQVVMAFALLYYA-IGWP  227 (366)
Q Consensus       151 ~~~~~~~~l~~i~~~~g~s~~~~--~vsl~~i~~~~g~~~~G~lsD~~grr~~~~R~~~~~~~~~~~~~~~~l~~-~~~~  227 (366)
                      ..+.....+|++.+++|++..+.  .++...++..+++++.|+++||+|||+.+      ..+.++.+++.++.. ..+.
T Consensus        35 ~~~~~~~~l~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~Dr~grr~~~------~~~~~~~~~~~~~~~~~~~~  108 (394)
T PRK10213         35 VEFLPVSLLTPMAQDLGISEGVAGQSVTVTAFVAMFASLFITQTIQATDRRYVV------ILFAVLLTLSCLLVSFANSF  108 (394)
T ss_pred             HHHHHHhhHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcccCcHHHH------HHHHHHHHHHHHHHHHHChH
Confidence            33445557888999999988765  77888999999999999999999998766      666666666666655 3456


Q ss_pred             HHHHHHHHHHHHHHhhhhhhHHHHHHHhhCCCchhhHHHHHHhhhhhhHHhhhhHHHHHHHhhhhhhhhhhhhhccCCCC
Q 017754          228 GEIYVTTVLVGLSYGAHWAIVPAAASELFGLKSFGALYNFLTLASPAGSLIFSGVIASGIYDYYAEKQAGLLWKYNGNML  307 (366)
Q Consensus       228 ~~l~~~~~l~G~~~g~~~~~~~~~~se~f~~~~~g~~~g~~~~~~~~G~~i~gp~l~G~l~d~~~~~~~~~~~~~~~~~~  307 (366)
                      ..+++++++.|++.|..++...++++|+++.++++.+.++...+.++|..+ +|.+++++.+..+               
T Consensus       109 ~~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~~~~a~~~~~~~~~~g~~i-g~~l~~~l~~~~g---------------  172 (394)
T PRK10213        109 SLLLIGRACLGLALGGFWAMSASLTMRLVPPRTVPKALSVIFGAVSIALVI-AAPLGSFLGELIG---------------  172 (394)
T ss_pred             HHHHHHHHHHHHhhHHHHHHHHHHHHHHcCHhHHHHHHHHHHHHHHHHHHH-HHHHHHHHHhhcC---------------
Confidence            678889999999999989999999999999999999999999999999996 9999999998776               


Q ss_pred             CcccCCCCCCcccCCcchHHHHHHHHHHHHHHHHH
Q 017754          308 PVSFRDQETPTCLGSICYSITCGIMAGLCIIAMVM  342 (366)
Q Consensus       308 ~~~~~~~~~~~c~g~~~~~~~f~i~~~~~~~~~~~  342 (366)
                                       |++.|++.+++++++.+.
T Consensus       173 -----------------w~~~f~~~~~l~~~~~l~  190 (394)
T PRK10213        173 -----------------WRNVFNAAAVMGVLCIFW  190 (394)
T ss_pred             -----------------HHHHHHHHHHHHHHHHHH
Confidence                             999999888766654433

>PRK09705 cynX putative cyanate transporter; Provisional

Probab=99.56  E-value=1.8e-13  Score=134.43  Aligned_cols=185  Identities=11%  Similarity=0.051  Sum_probs=137.8

Q ss_pred             HHHHhhhhhHHHHHHHHHHhhhhHHHHHhcHHHHHHHhCCChhHH--HHHHHHHHHhhhhhhhhhhhhhhhhhccCchhH
Q 017754          129 LPQALMKADFLLLFFSLVLASGSGLTVIDNLGQICQSLGYADTSI--YVSMISIWNFLGRVGGGYFSEAIVRKFAYPRPV  206 (366)
Q Consensus       129 ~~~~l~~~~~~ll~~~~~~~~~~~~~~~~~l~~i~~~~g~s~~~~--~vsl~~i~~~~g~~~~G~lsD~~grr~~~~R~~  206 (366)
                      ..+.++++++|.+.+.+++.......+.+++|.+.+++|++....  ..+++.++..+|+++.|+++||++||+..    
T Consensus       198 ~~~~l~~~~~~~l~~~~~~~~~~~~~~~~~lp~~l~~~g~s~~~ag~~~~~~~i~~i~g~~~~g~l~~r~~~~~~~----  273 (393)
T PRK09705        198 PVRVVFTPRAWTLGVYFGLINGGYASLIAWLPAFYIEIGASAQYSGSLLALMTLGQAAGALLMPAMARHQDRRKLL----  273 (393)
T ss_pred             CcccccCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCChhhhhHHHHHHHHHHHHHHHHHHHHHhhccchHHH----
Confidence            345667888888877776666666678889999998899887654  78899999999999999999999886544    


Q ss_pred             HHHHHHHHHHHHHHHHH-hhhhHHHHHHHHHHHHHHhhhhhhHHHHHHHhhC-CCchhhHHHHHHhhhhhhHHhhhhHHH
Q 017754          207 AMAVAQVVMAFALLYYA-IGWPGEIYVTTVLVGLSYGAHWAIVPAAASELFG-LKSFGALYNFLTLASPAGSLIFSGVIA  284 (366)
Q Consensus       207 ~~~~~~~~~~~~~~l~~-~~~~~~l~~~~~l~G~~~g~~~~~~~~~~se~f~-~~~~g~~~g~~~~~~~~G~~i~gp~l~  284 (366)
                        ..+..+.+++.+++. .+.... .+..++.|++.+..++.......+.++ .+++|+.+|+.+....+++.+ +|.+.
T Consensus       274 --~~~~~l~~~~~~~~~~~~~~~~-~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~~~~~-gp~~~  349 (393)
T PRK09705        274 --MLALVLQLVGFCGFIWLPLQLP-VLWAMVCGLGLGGAFPLCLLLALDHSVQPAIAGKLVAFMQGIGFIIAGL-APWFS  349 (393)
T ss_pred             --HHHHHHHHHHHHHHHHccchHH-HHHHHHHHHhccchHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHHHHH-HHHHH
Confidence              344444444444332 221111 122345677777777777767777775 467899999999999999996 99999


Q ss_pred             HHHHhhhhhhhhhhhhhccCCCCCcccCCCCCCcccCCcchHHHHHHHHHHHHHHHHHHHHHhhhchH
Q 017754          285 SGIYDYYAEKQAGLLWKYNGNMLPVSFRDQETPTCLGSICYSITCGIMAGLCIIAMVMSLIVVHRTKS  352 (366)
Q Consensus       285 G~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~g~~~~~~~f~i~~~~~~~~~~~~~~~~~~~r~  352 (366)
                      |++.|..+                               +|...|++.+++++++.++.+.+.++++.
T Consensus       350 G~l~~~~g-------------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  386 (393)
T PRK09705        350 GVLRSISG-------------------------------NYLMDWAFHALCVVGLMIITLRFAPARFP  386 (393)
T ss_pred             HHHHHHhC-------------------------------CchHHHHHHHHHHHHHHHHHHHhcccccc
Confidence            99999987                               38999998888888877776666666554

>PRK10091 MFS transport protein AraJ; Provisional

Probab=99.56  E-value=1.9e-13  Score=133.57  Aligned_cols=171  Identities=11%  Similarity=0.086  Sum_probs=140.4

Q ss_pred             hhHHHHHHHHHHhhhhHHHHHhcHHHHHHHhCCChhHH--HHHHHHHHHhhhhhhhhhhhhhhhhhccCchhHHHHHHHH
Q 017754          136 ADFLLLFFSLVLASGSGLTVIDNLGQICQSLGYADTSI--YVSMISIWNFLGRVGGGYFSEAIVRKFAYPRPVAMAVAQV  213 (366)
Q Consensus       136 ~~~~ll~~~~~~~~~~~~~~~~~l~~i~~~~g~s~~~~--~vsl~~i~~~~g~~~~G~lsD~~grr~~~~R~~~~~~~~~  213 (366)
                      +.+|.+.+..++...........+|.+.+++|++....  ..+...++..++++.+|+++||+|||+.+      .++.+
T Consensus         3 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~g~r~~~------~~~~~   76 (382)
T PRK10091          3 KVILSLALGTFGLGMAEFGIMGVLTELAHDVGISIPAAGHMISYYALGVVVGAPIIALFSSRYSLKHIL------LFLVA   76 (382)
T ss_pred             chHHHHHHHHHHHHhhHHHHHhChHHHHHHcCCCHHHHhHHHHHHHHHHHHHHHHHHHHHccCccHHHH------HHHHH
Confidence            34676666766666666677788999999999987765  88999999999999999999999998766      66666


Q ss_pred             HHHHHHHHHH-hhhhHHHHHHHHHHHHHHhhhhhhHHHHHHHhhCCCchhhHHHHHHhhhhhhHHhhhhHHHHHHHhhhh
Q 017754          214 VMAFALLYYA-IGWPGEIYVTTVLVGLSYGAHWAIVPAAASELFGLKSFGALYNFLTLASPAGSLIFSGVIASGIYDYYA  292 (366)
Q Consensus       214 ~~~~~~~l~~-~~~~~~l~~~~~l~G~~~g~~~~~~~~~~se~f~~~~~g~~~g~~~~~~~~G~~i~gp~l~G~l~d~~~  292 (366)
                      +.+++.++.. ..+...+++.+++.|++.+...+....+++++++.++++.+.+....+..+|..+ +|.+++++.+..+
T Consensus        77 ~~~~~~~l~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~-g~~l~~~l~~~~g  155 (382)
T PRK10091         77 LCVIGNAMFTLSSSYLMLAIGRLVSGFPHGAFFGVGAIVLSKIIKPGKVTAAVAGMVSGMTVANLL-GIPLGTYLSQEFS  155 (382)
T ss_pred             HHHHHHHHHHHhCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCChHHhhHHHHHHHHHHHHHHHH-hccHHHHHhhhcc
Confidence            6677766665 4556778889999999998888888888999999999999999999999999996 9999999988766


Q ss_pred             hhhhhhhhhccCCCCCcccCCCCCCcccCCcchHHHHHHHHHHHHHHHHHHHH
Q 017754          293 EKQAGLLWKYNGNMLPVSFRDQETPTCLGSICYSITCGIMAGLCIIAMVMSLI  345 (366)
Q Consensus       293 ~~~~~~~~~~~~~~~~~~~~~~~~~~c~g~~~~~~~f~i~~~~~~~~~~~~~~  345 (366)
                                                      ||++|++.++++++..+....
T Consensus       156 --------------------------------wr~~f~~~~~~~~~~~~~~~~  176 (382)
T PRK10091        156 --------------------------------WRYTFLLIAVFNIAVLASIYF  176 (382)
T ss_pred             --------------------------------HHHHHHHHHHHHHHHHHHHHH
Confidence                                            999999988877666554443

>TIGR00900 2A0121 H+ Antiporter protein

Probab=99.55  E-value=2e-13  Score=130.64  Aligned_cols=169  Identities=11%  Similarity=-0.009  Sum_probs=131.7

Q ss_pred             HHHHHHHHHhhhhHHHHHhcHHHHHHHhCCChhHH--HHHHHHHHHhhhhhhhhhhhhhhhhhccCchhHHHHHHHHHHH
Q 017754          139 LLLFFSLVLASGSGLTVIDNLGQICQSLGYADTSI--YVSMISIWNFLGRVGGGYFSEAIVRKFAYPRPVAMAVAQVVMA  216 (366)
Q Consensus       139 ~ll~~~~~~~~~~~~~~~~~l~~i~~~~g~s~~~~--~vsl~~i~~~~g~~~~G~lsD~~grr~~~~R~~~~~~~~~~~~  216 (366)
                      |.++++.++...........+|.+..+++.+....  ..++..++..++.+.+|+++||+|||+.+      ..+.++.+
T Consensus         2 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~~~~~~~~~i~~~~~G~l~dr~g~r~~~------~~~~~~~~   75 (365)
T TIGR00900         2 RLLFAAQLISLIGTAITQVALPLYVLAGTGSASVLSLAALAGMLPYVVLSPIAGALADRYDRKKVM------IGADLIRA   75 (365)
T ss_pred             eehHHHHHHHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHHHHHhhhHHHHhhchhHHH------HHHHHHHH
Confidence            44555555555555556667788888888887665  78888899999999999999999998755      44544444


Q ss_pred             HHHHHHH-hh-----hhHHHHHHHHHHHHHHhhhhhhHHHHHHHhhCCCchhhHHHHHHhhhhhhHHhhhhHHHHHHHhh
Q 017754          217 FALLYYA-IG-----WPGEIYVTTVLVGLSYGAHWAIVPAAASELFGLKSFGALYNFLTLASPAGSLIFSGVIASGIYDY  290 (366)
Q Consensus       217 ~~~~l~~-~~-----~~~~l~~~~~l~G~~~g~~~~~~~~~~se~f~~~~~g~~~g~~~~~~~~G~~i~gp~l~G~l~d~  290 (366)
                      ++.+++. ..     +...+++..++.|++.+...+...++++|+++.++|+..+++.+....+|..+ ||.+++++.+.
T Consensus        76 ~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~-g~~l~~~l~~~  154 (365)
T TIGR00900        76 VLVAVLPFVALLGGLNIWQVYVLAGILAIAQAFFTPAYQAMLPDLVPEEQLTQANSLSQAVRSLFYIV-GPGIGGLMYAT  154 (365)
T ss_pred             HHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHhHHHHHHHHHHHH-HHHHHHHHHHH
Confidence            4444333 22     45667888899999999988999999999999999999999999999999996 99999999988


Q ss_pred             hhhhhhhhhhhccCCCCCcccCCCCCCcccCCcchHHHHHHHHHHHHHHHHHHHHH
Q 017754          291 YAEKQAGLLWKYNGNMLPVSFRDQETPTCLGSICYSITCGIMAGLCIIAMVMSLIV  346 (366)
Q Consensus       291 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~g~~~~~~~f~i~~~~~~~~~~~~~~~  346 (366)
                      .+                                |++.|++.++.++++.+..+.+
T Consensus       155 ~g--------------------------------~~~~~~~~~~~~~~~~~~~~~~  178 (365)
T TIGR00900       155 LG--------------------------------IKWAIWVDAVGFAISALLIVSV  178 (365)
T ss_pred             hh--------------------------------HHHHHHHHHHHHHHHHHHHHhc
Confidence            76                                9999988877666655444433

>PRK15403 multidrug efflux system protein MdtM; Provisional

Probab=99.54  E-value=3.7e-13  Score=133.17  Aligned_cols=161  Identities=13%  Similarity=0.084  Sum_probs=128.9

Q ss_pred             hhHHHHHhcHHHHHHHhCCChhHH--HHHHHHHHHhhhhhhhhhhhhhhhhhccCchhHHHHHHHHHHHHHHHHHH-hhh
Q 017754          150 GSGLTVIDNLGQICQSLGYADTSI--YVSMISIWNFLGRVGGGYFSEAIVRKFAYPRPVAMAVAQVVMAFALLYYA-IGW  226 (366)
Q Consensus       150 ~~~~~~~~~l~~i~~~~g~s~~~~--~vsl~~i~~~~g~~~~G~lsD~~grr~~~~R~~~~~~~~~~~~~~~~l~~-~~~  226 (366)
                      .....+...+|++.+++|.+....  .++++.++..++++.+|+++||+|||+.+      ..+.++.+++.++.. ..+
T Consensus        30 ~~~~~~~p~l~~i~~~~~~~~~~~~~~~s~~~~~~~~~~~~~G~l~dr~Grr~~l------~~~~~~~~~~~~~~~~a~~  103 (413)
T PRK15403         30 LTTDLIQPGIINVVRDFNADVSLAPASVSLYLAGGMALQWLLGPLSDRIGRRPVL------ITGALIFTLACAATLFTTS  103 (413)
T ss_pred             HHHHhhccCHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHhhhHHHHHcCchHHH------HHHHHHHHHHHHHHHHcCC
Confidence            344456677889999999887665  88999999999999999999999998755      556666666666655 345


Q ss_pred             hHHHHHHHHHHHHHHhhhhhhHHHHHHHhhCCCchhhHHHHHHhhhhhhHHhhhhHHHHHHHhhhhhhhhhhhhhccCCC
Q 017754          227 PGEIYVTTVLVGLSYGAHWAIVPAAASELFGLKSFGALYNFLTLASPAGSLIFSGVIASGIYDYYAEKQAGLLWKYNGNM  306 (366)
Q Consensus       227 ~~~l~~~~~l~G~~~g~~~~~~~~~~se~f~~~~~g~~~g~~~~~~~~G~~i~gp~l~G~l~d~~~~~~~~~~~~~~~~~  306 (366)
                      ...+++++++.|++.+...+..++++.|.++.++++.+.++.+....+|..+ ||.+++.+.+..+              
T Consensus       104 ~~~l~~~r~l~Gi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-g~~lg~~l~~~~g--------------  168 (413)
T PRK15403        104 MTQFLIARFIQGTSICFIATVGYVTVQEAFGQTKGIKLMAIITSIVLVAPII-GPLSGAALMHFVH--------------  168 (413)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHhcC--------------
Confidence            5678889999999887666667788999999999999999999999999996 9999999887655              


Q ss_pred             CCcccCCCCCCcccCCcchHHHHHHHHHHHHHHHHHHHHHhhh
Q 017754          307 LPVSFRDQETPTCLGSICYSITCGIMAGLCIIAMVMSLIVVHR  349 (366)
Q Consensus       307 ~~~~~~~~~~~~c~g~~~~~~~f~i~~~~~~~~~~~~~~~~~~  349 (366)
                                        |++.|++.+++.+++.+..+...++
T Consensus       169 ------------------w~~~f~~~~~~~~i~~~~~~~~lp~  193 (413)
T PRK15403        169 ------------------WKVLFAIIAVMGLIAFVGLLLAMPE  193 (413)
T ss_pred             ------------------HHHHHHHHHHHHHHHHHHHHHhCCC
Confidence                              9999999988877776554443333

>TIGR00710 efflux_Bcr_CflA drug resistance transporter, Bcr/CflA subfamily

Probab=99.54  E-value=3.6e-13  Score=130.41  Aligned_cols=160  Identities=11%  Similarity=0.115  Sum_probs=130.5

Q ss_pred             hhHHHHHhcHHHHHHHhCCChhHH--HHHHHHHHHhhhhhhhhhhhhhhhhhccCchhHHHHHHHHHHHHHHHHHH-hhh
Q 017754          150 GSGLTVIDNLGQICQSLGYADTSI--YVSMISIWNFLGRVGGGYFSEAIVRKFAYPRPVAMAVAQVVMAFALLYYA-IGW  226 (366)
Q Consensus       150 ~~~~~~~~~l~~i~~~~g~s~~~~--~vsl~~i~~~~g~~~~G~lsD~~grr~~~~R~~~~~~~~~~~~~~~~l~~-~~~  226 (366)
                      .....+...+|.+.+++|.+..+.  ..+...++..++.+++|+++||+|||+..      ..+.++.+++.++.. ..+
T Consensus        19 ~~~~~~~~~~p~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~d~~g~r~~~------~~~~~~~~~~~~~~~~~~~   92 (385)
T TIGR00710        19 LGIDMYLPAFPEIAADLSTPASIVQMTLTLYLLGFAAGQLLWGPLSDRYGRRPVL------LLGLFIFALSSLGLALSNN   92 (385)
T ss_pred             HHHHHhcccHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHhhhhHHHhcCChHHH------HHHHHHHHHHHHHHHHHcc
Confidence            344456667899999999987765  78888899999999999999999987655      556666666666655 344


Q ss_pred             hHHHHHHHHHHHHHHhhhhhhHHHHHHHhhCCCchhhHHHHHHhhhhhhHHhhhhHHHHHHHhhhhhhhhhhhhhccCCC
Q 017754          227 PGEIYVTTVLVGLSYGAHWAIVPAAASELFGLKSFGALYNFLTLASPAGSLIFSGVIASGIYDYYAEKQAGLLWKYNGNM  306 (366)
Q Consensus       227 ~~~l~~~~~l~G~~~g~~~~~~~~~~se~f~~~~~g~~~g~~~~~~~~G~~i~gp~l~G~l~d~~~~~~~~~~~~~~~~~  306 (366)
                      ...+++..++.|++.+...+...+++.|.++.++++..+++.+....+|..+ +|.++|++.+..+              
T Consensus        93 ~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~-g~~~~~~l~~~~~--------------  157 (385)
T TIGR00710        93 IETLLVLRFVQAFGASAGSVISQALVRDIYPGEELSRIYSILMPVLALAPAV-APLLGGYILVWLS--------------  157 (385)
T ss_pred             HHHHHHHHHHHHcchhHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHcC--------------
Confidence            5567778889999999888889999999999999999999999999999996 9999999988776              


Q ss_pred             CCcccCCCCCCcccCCcchHHHHHHHHHHHHHHHHHHHHHhh
Q 017754          307 LPVSFRDQETPTCLGSICYSITCGIMAGLCIIAMVMSLIVVH  348 (366)
Q Consensus       307 ~~~~~~~~~~~~c~g~~~~~~~f~i~~~~~~~~~~~~~~~~~  348 (366)
                                        |+..|++.+++++++.+...+..+
T Consensus       158 ------------------~~~~~~~~~~~~~~~~~~~~~~~~  181 (385)
T TIGR00710       158 ------------------WHAIFAFLSLAGILLSALIFFILP  181 (385)
T ss_pred             ------------------HHHHHHHHHHHHHHHHHHHHHhCC
Confidence                              999999888877776666555443

This subfamily of drug efflux proteins, a part of the major faciliator family, is predicted to have 12 membrane-spanning regions. Members with known activity include Bcr (bicyclomycin resistance protein) in E. coli, Flor (chloramphenicol and florfenicol resistance) in Salmonella typhimurium DT104, and CmlA (chloramphenicol resistance) in Pseudomonas sp. plasmid R1033.

>PRK11551 putative 3-hydroxyphenylpropionic transporter MhpT; Provisional

Probab=99.54  E-value=3.3e-13  Score=132.34  Aligned_cols=172  Identities=14%  Similarity=0.087  Sum_probs=126.7

Q ss_pred             HHHHHHHHHHhhhhHHHHHhcHHHHHHHhCCChhHH--HHHHHHHHHhhhhhhhhhhhhhhhhhccCchhHHHHHHHHHH
Q 017754          138 FLLLFFSLVLASGSGLTVIDNLGQICQSLGYADTSI--YVSMISIWNFLGRVGGGYFSEAIVRKFAYPRPVAMAVAQVVM  215 (366)
Q Consensus       138 ~~ll~~~~~~~~~~~~~~~~~l~~i~~~~g~s~~~~--~vsl~~i~~~~g~~~~G~lsD~~grr~~~~R~~~~~~~~~~~  215 (366)
                      .+.++..+++.......+..++|.+.++.|++....  ..+...++..+++++.|+++||++||+..      .+..+.+
T Consensus       222 ~~~~~~~~~~~~~~~~~~~~~~p~~~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~~~~~------~~~~~~~  295 (406)
T PRK11551        222 TLLLWISYFFTLIVLYFLLNWLPSLLVGQGLSRSQAGLVQIAFNIGGALGSLLIGALMDRLRPRRVV------LLIYAGI  295 (406)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCChhhhhHHHHHHHHHHHHHHHHHHHHHHHHhHHHHH------HHHHHHH
Confidence            344444444444455566778999999999876654  77788889999999999999999987544      3334444


Q ss_pred             HHHHHHHH-hhhhHHHHHHHHHHHHHHhhhhhhHHHHHHHhhCCCchhhHHHHHHhhhhhhHHhhhhHHHHHHHhhhhhh
Q 017754          216 AFALLYYA-IGWPGEIYVTTVLVGLSYGAHWAIVPAAASELFGLKSFGALYNFLTLASPAGSLIFSGVIASGIYDYYAEK  294 (366)
Q Consensus       216 ~~~~~l~~-~~~~~~l~~~~~l~G~~~g~~~~~~~~~~se~f~~~~~g~~~g~~~~~~~~G~~i~gp~l~G~l~d~~~~~  294 (366)
                      +++.+++. ..+...+++..++.|++.++..+..+++++|.+|.+++|+..|+.+....+|+.+ ||.++|+++|..+  
T Consensus       296 ~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~~-g~~~~g~l~~~~~--  372 (406)
T PRK11551        296 LASLAALAAAPSFAGMLLAGFAAGLFVVGGQSVLYALAPLFYPTQVRGTGVGAAVAVGRLGSMA-GPLLAGQLLALGR--  372 (406)
T ss_pred             HHHHHHHHhcCcHHHHHHHHHHHHHHHHhHHHHHHHHHHHHcchhhhhhhhhHHHHhhhHHHHH-HhhhHhhhhccCC--
Confidence            44444433 2334455566677788877777888899999999999999999999999999996 9999999998764  


Q ss_pred             hhhhhhhccCCCCCcccCCCCCCcccCCcchHHHHHHHHHHHHHHHHHHHHHh
Q 017754          295 QAGLLWKYNGNMLPVSFRDQETPTCLGSICYSITCGIMAGLCIIAMVMSLIVV  347 (366)
Q Consensus       295 ~~~~~~~~~~~~~~~~~~~~~~~~c~g~~~~~~~f~i~~~~~~~~~~~~~~~~  347 (366)
                                                   .|...+++.+.+.+++.++.+.+.
T Consensus       373 -----------------------------~~~~~~~~~~~~~~~~~~~~~~~~  396 (406)
T PRK11551        373 -----------------------------STVGVIGASIPVILVAALAALLLV  396 (406)
T ss_pred             -----------------------------chHHHHHHHHHHHHHHHHHHHHHh
Confidence                                         277777777766666666555443

>PRK10054 putative transporter; Provisional

Probab=99.53  E-value=6e-13  Score=130.83  Aligned_cols=171  Identities=11%  Similarity=0.042  Sum_probs=130.5

Q ss_pred             hHHHHHHHHHHhhhhHHHHHhcHHHHH-HHhCCChhHH--HHHHHHHHHhhhhhhhhhhhhhhhhhccCchhHHHHHHHH
Q 017754          137 DFLLLFFSLVLASGSGLTVIDNLGQIC-QSLGYADTSI--YVSMISIWNFLGRVGGGYFSEAIVRKFAYPRPVAMAVAQV  213 (366)
Q Consensus       137 ~~~ll~~~~~~~~~~~~~~~~~l~~i~-~~~g~s~~~~--~vsl~~i~~~~g~~~~G~lsD~~grr~~~~R~~~~~~~~~  213 (366)
                      ++|.+.+..++..........++|.+. +++|++..++  ..++..+...++++..|+++||+|||+..      ..+.+
T Consensus         8 ~~~~l~~~~~~~~~g~~~~~~~l~~~l~~~~g~s~~~~g~~~s~~~~~~~~~~~~~G~l~Dr~g~k~~~------~~~~~   81 (395)
T PRK10054          8 STSALLASSLLLTIGRGATLPFMTIYLSRQYSLSVDLIGYAMTIALTIGVVFSLGFGILADKFDKKRYM------LLAIT   81 (395)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCcchhH------HHHHH
Confidence            477777777777776667777777766 5689988776  77778888999999999999999998655      45555


Q ss_pred             HHHHHHHHHHh-hhhHHHHHHHHHHHHHHhhhhhhHHHHHHHhhCCCchhhHHHHHHhhhhhhHHhhhhHHHHHHHhhhh
Q 017754          214 VMAFALLYYAI-GWPGEIYVTTVLVGLSYGAHWAIVPAAASELFGLKSFGALYNFLTLASPAGSLIFSGVIASGIYDYYA  292 (366)
Q Consensus       214 ~~~~~~~l~~~-~~~~~l~~~~~l~G~~~g~~~~~~~~~~se~f~~~~~g~~~g~~~~~~~~G~~i~gp~l~G~l~d~~~  292 (366)
                      +.+++.+++.. ++...++++..+.|.+.+...+...++.+|.++++++++++|+.+...++|..+ ||.+++++++ .+
T Consensus        82 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~lg~~i-gp~l~~~l~~-~g  159 (395)
T PRK10054         82 AFASGFIAIPLVNNVTLVVLFFALINCAYSVFSTVLKAWFADNLSSTSKTKIFSLNYTMLNIGWTV-GPPLGTLLVM-QS  159 (395)
T ss_pred             HHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHhHHHHHHHHHHHHHHHHHHH-HHHHHHHHHH-hc
Confidence            55565555543 334445555666676666666777888999999999999999999999999996 9999999874 44


Q ss_pred             hhhhhhhhhccCCCCCcccCCCCCCcccCCcchHHHHHHHHHHHHHHHHHHHHHh
Q 017754          293 EKQAGLLWKYNGNMLPVSFRDQETPTCLGSICYSITCGIMAGLCIIAMVMSLIVV  347 (366)
Q Consensus       293 ~~~~~~~~~~~~~~~~~~~~~~~~~~c~g~~~~~~~f~i~~~~~~~~~~~~~~~~  347 (366)
                                                      |+..|++.+++++++.++..+..
T Consensus       160 --------------------------------~~~~f~~~~~~~~i~~i~~~~~~  182 (395)
T PRK10054        160 --------------------------------INLPFWLAAICSAFPLVFIQIWV  182 (395)
T ss_pred             --------------------------------cCcHHHHHHHHHHHHHHHHHHHH
Confidence                                            89999988877777655554443

>TIGR00711 efflux_EmrB drug resistance transporter, EmrB/QacA subfamily

Probab=99.53  E-value=1.9e-13  Score=137.00  Aligned_cols=171  Identities=12%  Similarity=0.168  Sum_probs=139.1

Q ss_pred             HHHHHHHHhhhhHHHHHhcHHHHHHHhCCChhHH--HHHHHHHHHhhhhhhhhhhhhhhhhhccCchhHHHHHHHHHHHH
Q 017754          140 LLFFSLVLASGSGLTVIDNLGQICQSLGYADTSI--YVSMISIWNFLGRVGGGYFSEAIVRKFAYPRPVAMAVAQVVMAF  217 (366)
Q Consensus       140 ll~~~~~~~~~~~~~~~~~l~~i~~~~g~s~~~~--~vsl~~i~~~~g~~~~G~lsD~~grr~~~~R~~~~~~~~~~~~~  217 (366)
                      .+.++.++...........+|.+.+++|.+..+.  ..+.+.++..++.++.|+++||+|||+.+      ..+.++..+
T Consensus         6 ~~~~~~~~~~~~~~~~~~~~p~~~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~------~~~~~~~~~   79 (485)
T TIGR00711         6 VLMLGTFMAVLDSTIVNVAIPTIAGDLGSSLSQVQWVITSYMLANAISIPLTGWLAKRFGTRRLF------LISTFAFTL   79 (485)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhcCCChhhhhHHHHHHHHHHHHHHHhHHHHHHHhCcHHHH------HHHHHHHHH
Confidence            3444555555555666778999999999987654  78888999999999999999999998765      666667777


Q ss_pred             HHHHHH-hhhhHHHHHHHHHHHHHHhhhhhhHHHHHHHhhCCCchhhHHHHHHhhhhhhHHhhhhHHHHHHHhhhhhhhh
Q 017754          218 ALLYYA-IGWPGEIYVTTVLVGLSYGAHWAIVPAAASELFGLKSFGALYNFLTLASPAGSLIFSGVIASGIYDYYAEKQA  296 (366)
Q Consensus       218 ~~~l~~-~~~~~~l~~~~~l~G~~~g~~~~~~~~~~se~f~~~~~g~~~g~~~~~~~~G~~i~gp~l~G~l~d~~~~~~~  296 (366)
                      +.++.. ..+...+++++++.|++.+...+...++++|.+++++|+.+.++..+...+|..+ ||.++|++.+..+    
T Consensus        80 ~~~~~~~~~~~~~l~~~~~~~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~-g~~~~~~l~~~~~----  154 (485)
T TIGR00711        80 GSLLCGVAPNLELMIIFRVIQGFGGGPLIPLSFSTLLNIYPPEKRGRAMAIWGLTVLVAPAL-GPTLGGWIIENYH----  154 (485)
T ss_pred             HHHHHhCcCCHHHHHHHHHHHHhhhhhHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHhhh-hhccHhHhccCcC----
Confidence            766665 3455677888999999999988999999999999999999999999999999996 9999999988766    


Q ss_pred             hhhhhccCCCCCcccCCCCCCcccCCcchHHHHHHHHHHHHHHHHHHHHHhhh
Q 017754          297 GLLWKYNGNMLPVSFRDQETPTCLGSICYSITCGIMAGLCIIAMVMSLIVVHR  349 (366)
Q Consensus       297 ~~~~~~~~~~~~~~~~~~~~~~c~g~~~~~~~f~i~~~~~~~~~~~~~~~~~~  349 (366)
                                                  |++.|++.+.+++++.++.++..++
T Consensus       155 ----------------------------w~~~f~~~~~~~~~~~~~~~~~~~~  179 (485)
T TIGR00711       155 ----------------------------WRWIFLINVPIGIIVVVVAFFILPR  179 (485)
T ss_pred             ----------------------------ceehhhhhhHHHHHHHHHHHHHcCC
Confidence                                        9999999888777766665555443

This subfamily of drug efflux proteins, a part of the major faciliator family, is predicted to have 14 potential membrane-spanning regions. Members with known activities include EmrB (multiple drug resistance efflux pump) in E. coli, FarB (antibacterial fatty acid resistance) in Neisseria gonorrhoeae, TcmA (tetracenomycin C resistance) in Streptomyces glaucescens, etc. In most cases, the efflux pump is described as having a second component encoded in the same operon, such as EmrA of E. coli.

>PF07690 MFS_1: Major Facilitator Superfamily; InterPro: IPR011701 Among the different families of transporter, only two occur ubiquitously in all classifications of organisms

Probab=99.53  E-value=1e-13  Score=132.20  Aligned_cols=165  Identities=18%  Similarity=0.245  Sum_probs=132.4

Q ss_pred             HHHHHhhhhHHHHHhcHH-HHHHHhCCChhHH--HHHHHHHHHhhhhhhhhhhhhhhhhhccCchhHHHHHHHHHHHHHH
Q 017754          143 FSLVLASGSGLTVIDNLG-QICQSLGYADTSI--YVSMISIWNFLGRVGGGYFSEAIVRKFAYPRPVAMAVAQVVMAFAL  219 (366)
Q Consensus       143 ~~~~~~~~~~~~~~~~l~-~i~~~~g~s~~~~--~vsl~~i~~~~g~~~~G~lsD~~grr~~~~R~~~~~~~~~~~~~~~  219 (366)
                      ++.++.......+...+| .+.+++|.+..+.  ..+...++..++.+..|+++||+|||+..      ..+.++.+++.
T Consensus         3 l~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~r~~l------~~~~~~~~~~~   76 (352)
T PF07690_consen    3 LAFFLSGFGFSIISPALPLYLAEELGLSPSQIGLLFSAFFLGSALFSPFAGYLSDRFGRRRVL------IIGLLLFALGS   76 (352)
T ss_dssp             HHHHHHHHHHHHHHHHHH-HHHCCSTTTSHCHHHHHHHHHHHHHHHHHHHHHHHHHS-HHHHH------HHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCeeeE------eehhhhhhhHH
Confidence            344444455555666777 6778899887765  78888999999999999999999987754      66677766664


Q ss_pred             HHHHh-hhhHHHHHHHHHHHHHHhhhhhhHHHHHHHhhCCCchhhHHHHHHhhhhhhHHhhhhHHHHHHHhhhhhhhhhh
Q 017754          220 LYYAI-GWPGEIYVTTVLVGLSYGAHWAIVPAAASELFGLKSFGALYNFLTLASPAGSLIFSGVIASGIYDYYAEKQAGL  298 (366)
Q Consensus       220 ~l~~~-~~~~~l~~~~~l~G~~~g~~~~~~~~~~se~f~~~~~g~~~g~~~~~~~~G~~i~gp~l~G~l~d~~~~~~~~~  298 (366)
                      ++... .+...++++.++.|++.+...+...++++|.++.++|+..+++......+|..+ +|.+++++.+..+      
T Consensus        77 ~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~g~~~-g~~l~~~l~~~~~------  149 (352)
T PF07690_consen   77 LLLAFASNFWLLLIARFLLGIGSGFFSPASNALIADWFPPEERGRAFGILSAGFSLGSIL-GPLLGGFLISYFG------  149 (352)
T ss_dssp             HHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCTCCHHHHHHHHHHHHHHHHHH-HHHHHHHCCCHCH------
T ss_pred             HHhhhhhhHHHHhhhccccccccccccccccccccccchhhhhhhccccccchhhhhhhc-ccchhhhhhhccc------
Confidence            44333 444578889999999999999999999999999999999999999999999996 9999999997776      


Q ss_pred             hhhccCCCCCcccCCCCCCcccCCcchHHHHHHHHHHHHHHHHHHHHH
Q 017754          299 LWKYNGNMLPVSFRDQETPTCLGSICYSITCGIMAGLCIIAMVMSLIV  346 (366)
Q Consensus       299 ~~~~~~~~~~~~~~~~~~~~c~g~~~~~~~f~i~~~~~~~~~~~~~~~  346 (366)
                                                |++.|++.+++++++.++...+
T Consensus       150 --------------------------~~~~~~~~~~~~~~~~il~~~~  171 (352)
T PF07690_consen  150 --------------------------WRWAFLISAILSLIAAILFILF  171 (352)
T ss_dssp             --------------------------HCCHHHHHHHHHHHHHHHHHCC
T ss_pred             --------------------------cccccccccchhhhhhhhHhhh
Confidence                                      9999999998888887654333

These are the ATP-Binding Cassette (ABC) superfamily and the Major Facilitator Superfamily (MFS). The MFS transporters are single-polypeptide secondary carriers capable only of transporting small solutes in response to chemiosmotic ion gradients [, ].; GO: 0055085 transmembrane transport, 0016021 integral to membrane; PDB: 2GFP_B 3O7P_A 3O7Q_A 1PW4_A.

>TIGR00892 2A0113 monocarboxylate transporter 1

Probab=99.53  E-value=3.9e-13  Score=134.70  Aligned_cols=177  Identities=16%  Similarity=0.174  Sum_probs=133.1

Q ss_pred             HHhhhhhHHHHHHHHHHhhhhHHHHHhcHHHHHHHhCCChhHH--HHHHHHHHHhhhhhhhhhhhhhhhhhccCchhHHH
Q 017754          131 QALMKADFLLLFFSLVLASGSGLTVIDNLGQICQSLGYADTSI--YVSMISIWNFLGRVGGGYFSEAIVRKFAYPRPVAM  208 (366)
Q Consensus       131 ~~l~~~~~~ll~~~~~~~~~~~~~~~~~l~~i~~~~g~s~~~~--~vsl~~i~~~~g~~~~G~lsD~~grr~~~~R~~~~  208 (366)
                      +.++++.+|.+.+..++..........++|.+.+++|++....  ..++.+++..++++++|+++||...+.  .|...+
T Consensus       236 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~d~~~~~~--~~~~~~  313 (455)
T TIGR00892       236 SLFTHRGFLVYLSGNVIMFLGFFAPIIFLVPYAKDKGVDEYEAAFLLSIIGFVDIFARPSCGLIAGLKWIRP--HVQYLF  313 (455)
T ss_pred             HHhcCchHHHHHHHHHHHHHHccchHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcccccCH--HHHHHH
Confidence            5778888998777766666655666678888888899987665  788888999999999999999742211  111222


Q ss_pred             HHHHHHHHHHHHHHH-hhhhHHHHHHHHHHHHHHhhhhhhHHHHHHHhhCCCchhhHHHHHHhhhhhhHHhhhhHHHHHH
Q 017754          209 AVAQVVMAFALLYYA-IGWPGEIYVTTVLVGLSYGAHWAIVPAAASELFGLKSFGALYNFLTLASPAGSLIFSGVIASGI  287 (366)
Q Consensus       209 ~~~~~~~~~~~~l~~-~~~~~~l~~~~~l~G~~~g~~~~~~~~~~se~f~~~~~g~~~g~~~~~~~~G~~i~gp~l~G~l  287 (366)
                      ..+.++.+++++++. ..+...+++..++.|++++...+..++++.|.++++++|+.+|+.+....+|..+ ||.++|++
T Consensus       314 ~~~~~~~~l~~ll~~~~~~~~~~~i~~~~~G~~~g~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~lg~~i-gp~i~G~l  392 (455)
T TIGR00892       314 SFALLFNGLTHLLCALAGDYTGLVIYCIFFGLSFGSVGALLFEVLMDLVGAQRFSSAVGLVTIVECCAVLI-GPPLAGRL  392 (455)
T ss_pred             HHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHhchHHHHHHHHHHHHhhHHHHhhHHhHHHHHHHHHHHc-cccceeee
Confidence            333333334333333 3344556677888899999888888999999999999999999999999999996 99999999


Q ss_pred             HhhhhhhhhhhhhhccCCCCCcccCCCCCCcccCCcchHHHHHHHHHHHHHHHH
Q 017754          288 YDYYAEKQAGLLWKYNGNMLPVSFRDQETPTCLGSICYSITCGIMAGLCIIAMV  341 (366)
Q Consensus       288 ~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~g~~~~~~~f~i~~~~~~~~~~  341 (366)
                      .|..+                               .|+..|++.+++++++++
T Consensus       393 ~~~~g-------------------------------~~~~~f~~~~~~~li~~~  415 (455)
T TIGR00892       393 VDATK-------------------------------NYKYIFYASGSIVVSAGL  415 (455)
T ss_pred             ehhcC-------------------------------CcchHHHHhhHHHHHHHH
Confidence            99875                               288888888877666554

>PRK11551 putative 3-hydroxyphenylpropionic transporter MhpT; Provisional

Probab=99.51  E-value=1.3e-12  Score=128.10  Aligned_cols=172  Identities=17%  Similarity=0.104  Sum_probs=130.4

Q ss_pred             HHHHHHHHHhhhhHHHHHhcHHHHHHHhCCChhHH--HHHHHHHHHhhhhhhhhhhhhhhhhhccCchhHHHHHHHHHHH
Q 017754          139 LLLFFSLVLASGSGLTVIDNLGQICQSLGYADTSI--YVSMISIWNFLGRVGGGYFSEAIVRKFAYPRPVAMAVAQVVMA  216 (366)
Q Consensus       139 ~ll~~~~~~~~~~~~~~~~~l~~i~~~~g~s~~~~--~vsl~~i~~~~g~~~~G~lsD~~grr~~~~R~~~~~~~~~~~~  216 (366)
                      .+.++..++............|.+.+++|++..+.  ..+...++..++.+..|+++||+|||+..      ..+.++..
T Consensus        18 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~------~~~~~~~~   91 (406)
T PRK11551         18 GLCFLVALLEGLDLQSAGVAAPRMAQEFGLDVAQMGWAFSAGILGLLPGALLGGRLADRIGRKRIL------IVSVALFG   91 (406)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchhH------HHHHHHHH
Confidence            33334444444444445556788899999987765  78888899999999999999999998766      45555555


Q ss_pred             HHHHHHH-hhhhHHHHHHHHHHHHHHhhhhhhHHHHHHHhhCCCchhhHHHHHHhhhhhhHHhhhhHHHHHHHhhhhhhh
Q 017754          217 FALLYYA-IGWPGEIYVTTVLVGLSYGAHWAIVPAAASELFGLKSFGALYNFLTLASPAGSLIFSGVIASGIYDYYAEKQ  295 (366)
Q Consensus       217 ~~~~l~~-~~~~~~l~~~~~l~G~~~g~~~~~~~~~~se~f~~~~~g~~~g~~~~~~~~G~~i~gp~l~G~l~d~~~~~~  295 (366)
                      ++.++.. ..+...+++..++.|++.+...+...++++|.+++++++++.++.+....+|..+ +|.+++.+.+..+   
T Consensus        92 ~~~~~~~~~~~~~~~~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~-~~~~~~~~~~~~~---  167 (406)
T PRK11551         92 LFSLATAQAWDFPSLLVARLLTGVGLGGALPNLIALTSEAVGPRLRGTAVSLMYCGVPFGGAL-ASVIGVLAAGDAA---  167 (406)
T ss_pred             HHHHHHHHhccHHHHHHHHHHHHhhHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHccccC---
Confidence            5554444 3455677888899999999888888999999999999999999999999999996 8988887776655   


Q ss_pred             hhhhhhccCCCCCcccCCCCCCcccCCcchHHHHHHHHHHHHHHHHHHHHHhhh
Q 017754          296 AGLLWKYNGNMLPVSFRDQETPTCLGSICYSITCGIMAGLCIIAMVMSLIVVHR  349 (366)
Q Consensus       296 ~~~~~~~~~~~~~~~~~~~~~~~c~g~~~~~~~f~i~~~~~~~~~~~~~~~~~~  349 (366)
                                                   |+..|++.+++.++..++...+.++
T Consensus       168 -----------------------------~~~~~~~~~~~~~~~~~~~~~~l~~  192 (406)
T PRK11551        168 -----------------------------WRHIFYVGGVGPLLLVPLLMRWLPE  192 (406)
T ss_pred             -----------------------------HHHHHHHHHHHHHHHHHHHHHhCCC
Confidence                                         9999998876666555544443333

>TIGR00893 2A0114 d-galactonate transporter

Probab=99.51  E-value=3.3e-13  Score=129.91  Aligned_cols=160  Identities=18%  Similarity=0.154  Sum_probs=131.8

Q ss_pred             hhhHHHHHhcHHHHHHHhCCChhHH--HHHHHHHHHhhhhhhhhhhhhhhhhhccCchhHHHHHHHHHHHHHHHHHH-hh
Q 017754          149 SGSGLTVIDNLGQICQSLGYADTSI--YVSMISIWNFLGRVGGGYFSEAIVRKFAYPRPVAMAVAQVVMAFALLYYA-IG  225 (366)
Q Consensus       149 ~~~~~~~~~~l~~i~~~~g~s~~~~--~vsl~~i~~~~g~~~~G~lsD~~grr~~~~R~~~~~~~~~~~~~~~~l~~-~~  225 (366)
                      ......+....|++.+++|++..+.  ..+...++..++.++.|+++||+|||+..      ..+.++.+++..+++ ..
T Consensus         7 ~~~~~~~~~~~~~~~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~r~~~------~~~~~~~~~~~~~~~~~~   80 (399)
T TIGR00893         7 YLDRANLSFAAPMLQEDLGLSAAQYGYVFSAFSWGYVVGQFPGGWLLDRFGARKTL------AVFIVIWGVFTGLQAFAG   80 (399)
T ss_pred             HHHHHhhhHhHHHHHHhhCCChhhHHHHHHHHHHHHHHHHHhHHHHHHhcCcceee------HHHHHHHHHHHHHHHHHc
Confidence            3444556667788888999987765  88889999999999999999999998877      566666666665555 34


Q ss_pred             hhHHHHHHHHHHHHHHhhhhhhHHHHHHHhhCCCchhhHHHHHHhhhhhhHHhhhhHHHHHHHhhhhhhhhhhhhhccCC
Q 017754          226 WPGEIYVTTVLVGLSYGAHWAIVPAAASELFGLKSFGALYNFLTLASPAGSLIFSGVIASGIYDYYAEKQAGLLWKYNGN  305 (366)
Q Consensus       226 ~~~~l~~~~~l~G~~~g~~~~~~~~~~se~f~~~~~g~~~g~~~~~~~~G~~i~gp~l~G~l~d~~~~~~~~~~~~~~~~  305 (366)
                      +...+++++++.|++.+..++....+++|.++.++|+...++......+|..+ +|.+++++.+..+             
T Consensus        81 ~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~-~~~~~~~l~~~~~-------------  146 (399)
T TIGR00893        81 AYVSLYILRVLLGAAEAPFFPGIILIVASWFPASERATAVSIFNSAQGLGGII-GGPLVGWILIHFS-------------  146 (399)
T ss_pred             CHHHHHHHHHHHHHHHHhhhhHHHHHHHHhCCHHHHHHHHHHHHHhchHHHHH-HHHHHHHHHHhCC-------------
Confidence            56678888999999999989999999999999999999999999999999996 9999999988776             


Q ss_pred             CCCcccCCCCCCcccCCcchHHHHHHHHHHHHHHHHHHHHHh
Q 017754          306 MLPVSFRDQETPTCLGSICYSITCGIMAGLCIIAMVMSLIVV  347 (366)
Q Consensus       306 ~~~~~~~~~~~~~c~g~~~~~~~f~i~~~~~~~~~~~~~~~~  347 (366)
                                         |++.|++.++++++..++.+.+.
T Consensus       147 -------------------~~~~~~~~~~~~~~~~~~~~~~~  169 (399)
T TIGR00893       147 -------------------WQWAFIIEGVLGIIWGVLWLKFI  169 (399)
T ss_pred             -------------------chHHHHHHHHHHHHHHHHhhhee
Confidence                               99999988887777666555443

>COG2223 NarK Nitrate/nitrite transporter [Inorganic ion transport and metabolism]

Probab=99.51  E-value=3.5e-13  Score=129.68  Aligned_cols=184  Identities=16%  Similarity=0.128  Sum_probs=139.5

Q ss_pred             HHHHhhhhhHHHHHHHHHHhhhhHHHHHhcHHHHHHH-hCCChhHH--HHHHHHHHHhhhhhhhhhhhhhhhhhccCchh
Q 017754          129 LPQALMKADFLLLFFSLVLASGSGLTVIDNLGQICQS-LGYADTSI--YVSMISIWNFLGRVGGGYFSEAIVRKFAYPRP  205 (366)
Q Consensus       129 ~~~~l~~~~~~ll~~~~~~~~~~~~~~~~~l~~i~~~-~g~s~~~~--~vsl~~i~~~~g~~~~G~lsD~~grr~~~~R~  205 (366)
                      ++...++++.|.+.+.|+...++...+..++|++.++ +|.+..++  +.++..+.+.+.|+++|++|||+|.++..   
T Consensus       211 ~~~v~~~~~~W~lsllY~~tFG~Fvgfs~~l~~~~~~~fg~~~~~Ag~~a~~f~~~g~l~Rp~GG~LsDR~Gg~rv~---  287 (417)
T COG2223         211 LKAVFSNKDTWLLSLLYFATFGGFVGFSAYLPMYLVTQFGLSPVTAGLIAFLFPLIGALARPLGGWLSDRIGGRRVT---  287 (417)
T ss_pred             HHHHhcCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChhhHHHHHHHHHHHHHHHHhccchhhhhccchhHH---
Confidence            5567789999999999999999999999999998865 79887764  88888999999999999999999887665   


Q ss_pred             HHHHHHHHHHHHHHHHHHhh-------h-hHHHHHHHHHHHHHHhhhhhhHHHHHHHhhCCCchhhHHHHHHhhhhhhHH
Q 017754          206 VAMAVAQVVMAFALLYYAIG-------W-PGEIYVTTVLVGLSYGAHWAIVPAAASELFGLKSFGALYNFLTLASPAGSL  277 (366)
Q Consensus       206 ~~~~~~~~~~~~~~~l~~~~-------~-~~~l~~~~~l~G~~~g~~~~~~~~~~se~f~~~~~g~~~g~~~~~~~~G~~  277 (366)
                         ......++++..++...       . ....+...+..+++.|......+..++.+|+ ++.|...|+..+.+.+|++
T Consensus       288 ---~~~f~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~l~~~~G~GnGsvfk~Ip~if~-~~~G~v~G~vga~G~lGGf  363 (417)
T COG2223         288 ---LAVFVGMALAAALLSLFLTGFGHGGSFVVFVAVFLALFVFAGLGNGSVFKMIPVIFP-KETGAVTGIVGAIGGLGGF  363 (417)
T ss_pred             ---HHHHHHHHHHHHHHHccccccccCcchHHHHHHHHHHHHHhccCcchheeechHHHH-hhhhHHHHHHHHhcccccc
Confidence               44444444444443321       1 1222222333444444444555556666673 4889999999999999999


Q ss_pred             hhhhHHHHHHHhhhhhhhhhhhhhccCCCCCcccCCCCCCcccCCcchHHHHHHHHHHHHHHHHHHHHHhhhch
Q 017754          278 IFSGVIASGIYDYYAEKQAGLLWKYNGNMLPVSFRDQETPTCLGSICYSITCGIMAGLCIIAMVMSLIVVHRTK  351 (366)
Q Consensus       278 i~gp~l~G~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~g~~~~~~~f~i~~~~~~~~~~~~~~~~~~~r  351 (366)
                      . =|...|..+|.++                               +|..+|+++..+.+++.+.....+.|.|
T Consensus       364 ~-lp~~~g~~~~~tg-------------------------------~~~~~f~~~~~~~~~a~v~~~~~y~r~~  405 (417)
T COG2223         364 F-LPLAFGVSLDLTG-------------------------------SYTGAFMLLLAFYLVALVLTWALYARRR  405 (417)
T ss_pred             c-hhHHHHHHHHhcc-------------------------------cHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence            6 5999999999998                               4999999999999888887777665543

>TIGR00890 2A0111 Oxalate/Formate Antiporter

Probab=99.50  E-value=6.2e-13  Score=127.68  Aligned_cols=163  Identities=14%  Similarity=0.209  Sum_probs=127.9

Q ss_pred             HHHhhhhHHHHHhcHHHHHHHhCCChhHH--HHHHHHHHHhhhhhhhhhhhhhhhhhccCchhHHHHHHHHHHHHHHHHH
Q 017754          145 LVLASGSGLTVIDNLGQICQSLGYADTSI--YVSMISIWNFLGRVGGGYFSEAIVRKFAYPRPVAMAVAQVVMAFALLYY  222 (366)
Q Consensus       145 ~~~~~~~~~~~~~~l~~i~~~~g~s~~~~--~vsl~~i~~~~g~~~~G~lsD~~grr~~~~R~~~~~~~~~~~~~~~~l~  222 (366)
                      ..+..+..+.....+|.+.+++|.+..+.  ..+.+.++..++.+.+|+++||+|||+.+      ..+.++.+++.++.
T Consensus        12 ~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~s~~~~~~~~~~~~~G~l~d~~G~r~~~------~~~~~~~~~~~~~~   85 (377)
T TIGR00890        12 MCFTSGYVYTWTLLAPPLGRYFGVGVTAVAIWFTLLLIGLAMSMPVGGLLADKFGPRAVA------MLGGILYGLGFTFY   85 (377)
T ss_pred             HHHHhhHHhhhhhHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHhhhhHHHHHHcCccchh------HHhHHHHHHHHHHH
Confidence            33333444556677899999999988776  88999999999999999999999998876      66666767776665


Q ss_pred             H-hhhhHHHHHHHHHHHHHHhhhhhhHHHHHHHhhCCCchhhHHHHHHhhhhhhHHhhhhHHHHHHHhhhhhhhhhhhhh
Q 017754          223 A-IGWPGEIYVTTVLVGLSYGAHWAIVPAAASELFGLKSFGALYNFLTLASPAGSLIFSGVIASGIYDYYAEKQAGLLWK  301 (366)
Q Consensus       223 ~-~~~~~~l~~~~~l~G~~~g~~~~~~~~~~se~f~~~~~g~~~g~~~~~~~~G~~i~gp~l~G~l~d~~~~~~~~~~~~  301 (366)
                      + ..+...+++++++.|++.+..++.....+.+.++ ++|+.+.++...+..+|..+ ++++.+.+.+..+         
T Consensus        86 ~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~g~~~-~~~~~~~~~~~~~---------  154 (377)
T TIGR00890        86 AIADSLAALYLTYGLASAGVGIAYGIALNTAVKWFP-DKRGLASGIIIGGYGLGSFI-LSPLITSVINLEG---------  154 (377)
T ss_pred             HHHHHHHHHHHHHHHHhHHHHHHHHhHHHHHHHHcC-cccHHHHHHHHHhcchhHhH-HHHHHHHHHhccc---------
Confidence            5 3455667788888999988877777777888886 67999999999999999986 6667777766554         


Q ss_pred             ccCCCCCcccCCCCCCcccCCcchHHHHHHHHHHHHHHHHHHHHHh
Q 017754          302 YNGNMLPVSFRDQETPTCLGSICYSITCGIMAGLCIIAMVMSLIVV  347 (366)
Q Consensus       302 ~~~~~~~~~~~~~~~~~c~g~~~~~~~f~i~~~~~~~~~~~~~~~~  347 (366)
                                             |++.|++.++++++.++..+.+.
T Consensus       155 -----------------------~~~~f~~~~~~~~~~~~~~~~~~  177 (377)
T TIGR00890       155 -----------------------VPAAFIYMGIIFLLVIVLGAFLI  177 (377)
T ss_pred             -----------------------HHHHHHHHHHHHHHHHHHHHHhe
Confidence                                   99999999988877766655544

>PRK10473 multidrug efflux system protein MdtL; Provisional

Probab=99.50  E-value=1.3e-12  Score=127.73  Aligned_cols=168  Identities=13%  Similarity=0.121  Sum_probs=132.0

Q ss_pred             HHHHHhhhhHHHHHhcHHHHHHHhCCChhHH--HHHHHHHHHhhhhhhhhhhhhhhhhhccCchhHHHHHHHHHHHHHHH
Q 017754          143 FSLVLASGSGLTVIDNLGQICQSLGYADTSI--YVSMISIWNFLGRVGGGYFSEAIVRKFAYPRPVAMAVAQVVMAFALL  220 (366)
Q Consensus       143 ~~~~~~~~~~~~~~~~l~~i~~~~g~s~~~~--~vsl~~i~~~~g~~~~G~lsD~~grr~~~~R~~~~~~~~~~~~~~~~  220 (366)
                      +..+........+...+|++.+++|.+....  ..+.+.++..++.++.|+++||+|||+..      ..+.++.+++.+
T Consensus        10 ~~~~~~~~~~~~~~~~lp~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~G~l~Dr~g~r~~l------~~~~~~~~i~~~   83 (392)
T PRK10473         10 ALVLLYPAGIDMYLVGLPRIAADLNASEAQLHIAFSVYLAGMAAAMLFAGKIADRSGRKPVA------IPGAALFIIASL   83 (392)
T ss_pred             HHHHHHHHHHHHHhhhHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHhHhHHHHHhCChHHH------HHHHHHHHHHHH
Confidence            3334444444456678999999999988765  77788888899999999999999987654      556666666666


Q ss_pred             HHHh-hhhHHHHHHHHHHHHHHhhhhhhHHHHHHHhhCCCchhhHHHHHHhhhhhhHHhhhhHHHHHHHhhhhhhhhhhh
Q 017754          221 YYAI-GWPGEIYVTTVLVGLSYGAHWAIVPAAASELFGLKSFGALYNFLTLASPAGSLIFSGVIASGIYDYYAEKQAGLL  299 (366)
Q Consensus       221 l~~~-~~~~~l~~~~~l~G~~~g~~~~~~~~~~se~f~~~~~g~~~g~~~~~~~~G~~i~gp~l~G~l~d~~~~~~~~~~  299 (366)
                      ++.. .+...+++..++.|++.+..++...+++.|.++.++|+...++.+....+|..+ +|.+++.+.+..+       
T Consensus        84 ~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~i~~~~-~~~i~~~l~~~~g-------  155 (392)
T PRK10473         84 LCSLAETSSLFLAGRFLQGIGAGCCYVVAFAILRDTLDDRRRAKVLSLLNGITCIIPVL-APVLGHLIMLKFP-------  155 (392)
T ss_pred             HHHHhCcHHHHHHHHHHHHhhhhHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHhCcC-------
Confidence            6553 344567778888999988888888999999999999999999999999999885 8999988877665       


Q ss_pred             hhccCCCCCcccCCCCCCcccCCcchHHHHHHHHHHHHHHHHHHHHHhhh
Q 017754          300 WKYNGNMLPVSFRDQETPTCLGSICYSITCGIMAGLCIIAMVMSLIVVHR  349 (366)
Q Consensus       300 ~~~~~~~~~~~~~~~~~~~c~g~~~~~~~f~i~~~~~~~~~~~~~~~~~~  349 (366)
                                               |++.|++.+++++++.++.+...++
T Consensus       156 -------------------------~~~~~~~~~~~~~i~~~~~~~~~~~  180 (392)
T PRK10473        156 -------------------------WQSLFYTMAAMGILVLLLSLFILKE  180 (392)
T ss_pred             -------------------------hHHHHHHHHHHHHHHHHHHHHHcCC
Confidence                                     9999999888877776665555443

>TIGR00924 yjdL_sub1_fam amino acid/peptide transporter (Peptide:H+ symporter), bacterial

Probab=99.50  E-value=7.2e-13  Score=133.51  Aligned_cols=167  Identities=17%  Similarity=0.239  Sum_probs=135.9

Q ss_pred             hHHHHHHHHHHhhhhHHHHHhcHHHHHHH---hCCChhHH--HHHHHHHHHhhhhhhhhhhhhh-hhhhccCchhHHHHH
Q 017754          137 DFLLLFFSLVLASGSGLTVIDNLGQICQS---LGYADTSI--YVSMISIWNFLGRVGGGYFSEA-IVRKFAYPRPVAMAV  210 (366)
Q Consensus       137 ~~~ll~~~~~~~~~~~~~~~~~l~~i~~~---~g~s~~~~--~vsl~~i~~~~g~~~~G~lsD~-~grr~~~~R~~~~~~  210 (366)
                      .+|.+++..++-..+.+....++|.+.++   +|++..++  .++.+.+...++++++|+++|| +|||+..      .+
T Consensus        11 ~~~~l~~~~~~~~~~~~~~~~~L~~yl~~~~~lg~s~~~ag~~~~~~~~~~~~~~~~~G~laDr~~G~~~~l------~~   84 (475)
T TIGR00924        11 PLFTLFFVELWERFSYYGMQGILAVYLVQQAGLGFSQEQAFIIFGAYSALVYLLTSVGWWFGDRVWGTKKTM------VL   84 (475)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHHHHHHhhHHHHHHhhcchHHHH------HH
Confidence            36677777777667777778889988765   78887665  8888899999999999999999 7998766      77


Q ss_pred             HHHHHHHHHHHHHhh-hhHHHHHHHHHHHHHHhhhhhhHHHHHHHhhCCCc---hhhHHHHHHhhhhhhHHhhhhHHHHH
Q 017754          211 AQVVMAFALLYYAIG-WPGEIYVTTVLVGLSYGAHWAIVPAAASELFGLKS---FGALYNFLTLASPAGSLIFSGVIASG  286 (366)
Q Consensus       211 ~~~~~~~~~~l~~~~-~~~~l~~~~~l~G~~~g~~~~~~~~~~se~f~~~~---~g~~~g~~~~~~~~G~~i~gp~l~G~  286 (366)
                      +.++.++++++++.. +...++++.++.|+|.|...+...+++++.++.++   ++.++++.+.+.++|+.+ ||.++|+
T Consensus        85 ~~~~~~~g~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~a~~~~~~~~~~r~~~~~~~~~~~niG~~i-g~~l~g~  163 (475)
T TIGR00924        85 GGIVLMLGHFMLAMSIYPDLIFYGLGTIAVGSGLFKANPSSMVGKLYERGDMPRRDGGFTLFYMSINIGSFI-SPLLAGV  163 (475)
T ss_pred             HHHHHHHHHHHHHhcccHhHHHHHHHHHHhccccccCCHHHHHHHhcCCCCcccccceehhHHHHHHHHHHH-HHHHHHH
Confidence            777788887777643 34566677888899988888888999999998764   888999999999999996 9999999


Q ss_pred             HHhhhhhhhhhhhhhccCCCCCcccCCCCCCcccCCcchHHHHHHHHHHHHHHHHH
Q 017754          287 IYDYYAEKQAGLLWKYNGNMLPVSFRDQETPTCLGSICYSITCGIMAGLCIIAMVM  342 (366)
Q Consensus       287 l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~g~~~~~~~f~i~~~~~~~~~~~  342 (366)
                      +.+..+                                |++.|++.++.++++.+.
T Consensus       164 l~~~~g--------------------------------~~~~f~~~~~~~~~~~l~  187 (475)
T TIGR00924       164 IAENYG--------------------------------YHVGFNLAAVGMVIGLLT  187 (475)
T ss_pred             HHHhcC--------------------------------hHHHHHHHHHHHHHHHHH
Confidence            998776                                999999887665555443

The model describes proton-dependent oligopeptide transporters in bacteria. This model is restricted in its range in recognizing bacterial proton-dependent oligopeptide transporters, although they are found in yeast, plants and animals. They function by proton symport in a 1:1 stoichiometry, which is variable in different species. All of them are predicted to contain 12 transmembrane domains, for which limited experimental evidence exists.

>TIGR00903 2A0129 major facilitator 4 family protein

Probab=99.50  E-value=7.7e-13  Score=129.02  Aligned_cols=159  Identities=10%  Similarity=0.013  Sum_probs=123.0

Q ss_pred             hHHHHHhcHHHHHHHhCCChhHH--HHHHHHHHHhhhhhhhhhhhhhhhhhccCchhHHHHHHHHHHHHHHHHHHh-hhh
Q 017754          151 SGLTVIDNLGQICQSLGYADTSI--YVSMISIWNFLGRVGGGYFSEAIVRKFAYPRPVAMAVAQVVMAFALLYYAI-GWP  227 (366)
Q Consensus       151 ~~~~~~~~l~~i~~~~g~s~~~~--~vsl~~i~~~~g~~~~G~lsD~~grr~~~~R~~~~~~~~~~~~~~~~l~~~-~~~  227 (366)
                      ....+...+|++.+++|.+..+.  ..+.+.++..++.+..|+++||+|||+..      .........+.+.... .+.
T Consensus         6 ~~~~~~~~lp~i~~~~~~s~~~~g~~~s~~~~g~~i~~~~~G~l~Dr~grr~~~------~~~~~~~~~~~~~~~~~~~~   79 (368)
T TIGR00903         6 IWVTFSPVLSLVAEDIDVSKEELGLLAITYPAAFLALTIPSGLLLDRAFKRWFL------FGSLATFAAAAGRLLDPFNY   79 (368)
T ss_pred             HHHHHHhhHHHHHHHhCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHccchHHH------HHHHHHHHHHHHHHHHhccH
Confidence            34456678999999999998776  78888899999999999999999987543      3333333333222222 455


Q ss_pred             HHHHHHHHHHHHHHhhhhhhHHHHHHHhhCCCchhhHHHHHHhhhhhhHHhhhhHHHHHHHhhhhhhhhhhhhhccCCCC
Q 017754          228 GEIYVTTVLVGLSYGAHWAIVPAAASELFGLKSFGALYNFLTLASPAGSLIFSGVIASGIYDYYAEKQAGLLWKYNGNML  307 (366)
Q Consensus       228 ~~l~~~~~l~G~~~g~~~~~~~~~~se~f~~~~~g~~~g~~~~~~~~G~~i~gp~l~G~l~d~~~~~~~~~~~~~~~~~~  307 (366)
                      ..+++++++.|++.+. .......++|.+++++|+++.++...+.++|..+ ++.+++++.+..+               
T Consensus        80 ~~l~~~R~l~G~g~~~-~~~~~~~~~~~~~~~~r~~a~~~~~~~~~lG~~l-~~~~~~~l~~~~g---------------  142 (368)
T TIGR00903        80 EWLLACQLLAALGQPF-LLNAFAPAASQIREERRDLVISLLSFAMYLGIIF-ALAAGLKIYTAGG---------------  142 (368)
T ss_pred             HHHHHHHHHHHhHhHH-HHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHccc---------------
Confidence            6788999999999886 4445556699999999999999999999999996 9999999987665               


Q ss_pred             CcccCCCCCCcccCCcchHHHHHHHHHHHHHHHHHHHHHhhh
Q 017754          308 PVSFRDQETPTCLGSICYSITCGIMAGLCIIAMVMSLIVVHR  349 (366)
Q Consensus       308 ~~~~~~~~~~~c~g~~~~~~~f~i~~~~~~~~~~~~~~~~~~  349 (366)
                                       ||+.|++.++++++..++.....++
T Consensus       143 -----------------Wr~~f~~~~~l~~~~~~~~~~~lp~  167 (368)
T TIGR00903       143 -----------------LQLLIIPIAAVAAAGIILVLAALPA  167 (368)
T ss_pred             -----------------hHHHHHHHHHHHHHHHHHHHHHcCC
Confidence                             9999999888887776666555443

This family of proteins are uncharacterized proteins from archaea. This family includes proteins from Archaeoglobus fulgidus and Aeropyrum pernix.

>TIGR00889 2A0110 nucleoside transporter

Probab=99.49  E-value=1e-12  Score=130.22  Aligned_cols=189  Identities=12%  Similarity=0.117  Sum_probs=138.7

Q ss_pred             HHHHhhhhhHHHHHHHHHHhhhhHHHHHhcHHHHHHHhCCCh--------h--HHHHHHHHHHHhhhhhhhhhhhhhhhh
Q 017754          129 LPQALMKADFLLLFFSLVLASGSGLTVIDNLGQICQSLGYAD--------T--SIYVSMISIWNFLGRVGGGYFSEAIVR  198 (366)
Q Consensus       129 ~~~~l~~~~~~ll~~~~~~~~~~~~~~~~~l~~i~~~~g~s~--------~--~~~vsl~~i~~~~g~~~~G~lsD~~gr  198 (366)
                      .++.+|++.+|.+++..++..........+++.+.++.|++.        .  ....++..+...++.+..|+++||+++
T Consensus       201 ~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~g~~~~~~~i~~i~~~~~~g~l~dr~g~  280 (418)
T TIGR00889       201 AFILFKNKRMAIFFFFSMLLGAPLQITNIFGNGFLHEFGRNPEFADSFVVKNASIWMSLSQFSEIFFILTIPFFLKRFGI  280 (418)
T ss_pred             HHHHhcCCCeeeHHHHHHHHHhHHHHHHHhHHHHHHHhcccccccchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhCc
Confidence            345778888887777766654444444455677777777543        1  227778888889999999999999998


Q ss_pred             hccCchhHHHHHHHHHHHHHHHHHHhh--hh---HHHHHHHHHHHHHHhhhhhhHHHHHHHhhCCCchhhHHHHHH-hhh
Q 017754          199 KFAYPRPVAMAVAQVVMAFALLYYAIG--WP---GEIYVTTVLVGLSYGAHWAIVPAAASELFGLKSFGALYNFLT-LAS  272 (366)
Q Consensus       199 r~~~~R~~~~~~~~~~~~~~~~l~~~~--~~---~~l~~~~~l~G~~~g~~~~~~~~~~se~f~~~~~g~~~g~~~-~~~  272 (366)
                      |+.+      ..+.++.+++..++...  +.   ..+++..++.|++.+...+.....++|.+|.+.+|+++|+.+ ...
T Consensus       281 r~~l------~~~~~~~~v~~~l~~~~~~~~~~~~~l~l~~~l~g~~~~~~~~~~~~~i~~~~p~~~~g~~~g~~~~~~~  354 (418)
T TIGR00889       281 KKVM------LLSLVAWALRFGFFAYGDPEYFGYALLFLSMIVYGCAFDFFNISGSVFVEKEVPVHIRASAQGLFTLMCN  354 (418)
T ss_pred             HHHH------HHHHHHHHHHHHHHHHcCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHH
Confidence            7755      66666666665554431  11   345566778888888777777888999999999999999997 567


Q ss_pred             hhhHHhhhhHHHHHHHhhhhhhhhhhhhhccCCCCCcccCCCCCCcccCCcchHHHHHHHHHHHHHHHHHHHHHhhhc
Q 017754          273 PAGSLIFSGVIASGIYDYYAEKQAGLLWKYNGNMLPVSFRDQETPTCLGSICYSITCGIMAGLCIIAMVMSLIVVHRT  350 (366)
Q Consensus       273 ~~G~~i~gp~l~G~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~g~~~~~~~f~i~~~~~~~~~~~~~~~~~~~  350 (366)
                      .+|+.+ ||.++|+++|..+...                          ..+|+.+|++.++++++++++.+++.+++
T Consensus       355 ~lg~~i-Gp~l~G~l~~~~g~~~--------------------------~~~~~~~f~~~~~~~~i~~~l~~~~~~~~  405 (418)
T TIGR00889       355 GFGSLL-GYILSGVMVEKMFAYG--------------------------TFDWQTMWLFFAGYIAILAVLFMIFFKYS  405 (418)
T ss_pred             hhHHHH-HHHHHHHHHHHhcccc--------------------------CCchHHHHHHHHHHHHHHHHHHHHHhCCc
Confidence            899996 9999999999875211                          01299999999888888877777776544

This family of proteins transports nucleosides at a high affinity. The transport mechanism is driven by proton motive force. This family includes nucleoside permease NupG and xanthosine permease from E.Coli.

>PRK05122 major facilitator superfamily transporter; Provisional

Probab=99.49  E-value=2.9e-12  Score=125.44  Aligned_cols=156  Identities=12%  Similarity=0.135  Sum_probs=119.4

Q ss_pred             HHHhcHHHHHHHhCCChhHHHHHHHHHHHhhhhhhhhhhhhhhhhhccCchhHHHHHHHHHHHHHHHHHH-hhhhHHHHH
Q 017754          154 TVIDNLGQICQSLGYADTSIYVSMISIWNFLGRVGGGYFSEAIVRKFAYPRPVAMAVAQVVMAFALLYYA-IGWPGEIYV  232 (366)
Q Consensus       154 ~~~~~l~~i~~~~g~s~~~~~vsl~~i~~~~g~~~~G~lsD~~grr~~~~R~~~~~~~~~~~~~~~~l~~-~~~~~~l~~  232 (366)
                      ....+++.+.++.|++......+.+.++..++++..|+++||+++|+..      ..+..+++++.+++. ..+...+++
T Consensus       234 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~~r~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~  307 (399)
T PRK05122        234 TIATFITLYYAARGWDGAALALTLFGVAFVGARLLFGNLINRLGGLRVA------IVSLLVEILGLLLLWLAPSPWMALI  307 (399)
T ss_pred             HHHHHHHHHHHHcccccchHHHHHHHHHHHHHHHHHHHHHHHhccHHHH------HHHHHHHHHHHHHHHHhccHHHHHH
Confidence            4445667777777775544466778888899999999999999876543      455555555555544 334445566


Q ss_pred             HHHHHHHHHhhhhhhHHHHHHHhhCCCchhhHHHHHHhhhhhhHHhhhhHHHHHHHhhhhhhhhhhhhhccCCCCCcccC
Q 017754          233 TTVLVGLSYGAHWAIVPAAASELFGLKSFGALYNFLTLASPAGSLIFSGVIASGIYDYYAEKQAGLLWKYNGNMLPVSFR  312 (366)
Q Consensus       233 ~~~l~G~~~g~~~~~~~~~~se~f~~~~~g~~~g~~~~~~~~G~~i~gp~l~G~l~d~~~~~~~~~~~~~~~~~~~~~~~  312 (366)
                      ..++.|++.+..++.....+.|.++++++|+.+++.+....+|..+ +|.+.|++.|..+                    
T Consensus       308 ~~~l~G~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~-~~~~~g~l~~~~g--------------------  366 (399)
T PRK05122        308 GAALTGFGFSLVFPALGVEAVKRVPPQNRGAALGAYSVFLDLSLGI-TGPLAGLVASWFG--------------------  366 (399)
T ss_pred             HHHHHHHhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHcC--------------------
Confidence            7778899988878777777889999999999999999999999986 8999999998876                    


Q ss_pred             CCCCCcccCCcchHHHHHHHHHHHHHHHHHHHHHhh
Q 017754          313 DQETPTCLGSICYSITCGIMAGLCIIAMVMSLIVVH  348 (366)
Q Consensus       313 ~~~~~~c~g~~~~~~~f~i~~~~~~~~~~~~~~~~~  348 (366)
                                  |+..|++.+++++++.++.+.+.+
T Consensus       367 ------------~~~~~~~~~~~~~~~~~~~~~~~~  390 (399)
T PRK05122        367 ------------YPSIFLAAALAALLGLALTWLLYR  390 (399)
T ss_pred             ------------HHHHHHHHHHHHHHHHHHHHHhcc
Confidence                        999999988888877766655433

>PRK03699 putative transporter; Provisional

Probab=99.49  E-value=2e-12  Score=126.79  Aligned_cols=170  Identities=12%  Similarity=0.098  Sum_probs=133.1

Q ss_pred             hhHHHHHHHHHHhhhhHHHHHhcHHHHHHHhCCChhHH--HHHHHHHHHhhhhhhhhhhhhhhhhhccCchhHHHHHHHH
Q 017754          136 ADFLLLFFSLVLASGSGLTVIDNLGQICQSLGYADTSI--YVSMISIWNFLGRVGGGYFSEAIVRKFAYPRPVAMAVAQV  213 (366)
Q Consensus       136 ~~~~ll~~~~~~~~~~~~~~~~~l~~i~~~~g~s~~~~--~vsl~~i~~~~g~~~~G~lsD~~grr~~~~R~~~~~~~~~  213 (366)
                      +.+|..++.+++.......+...+|++.+++|++..+.  ..+...++..++.+++|+++||+|||+..      ..+.+
T Consensus         7 ~~~~~~~~~~~~~~~~~~~~g~~~~~i~~~~~~s~~~~g~~~s~~~~~~~i~~~~~g~l~dr~g~r~~~------~~~~~   80 (394)
T PRK03699          7 KLTWISFLSYALTGALVIVTGMVMGPIAEYFNLPVSSMSNTFTFLNAGILISIFLNAWLMEIIPLKRQL------IFGFA   80 (394)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhhhhHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHH------HHHHH
Confidence            34666666666666666667778999999999988765  77888899999999999999999998755      55555


Q ss_pred             HHHHHHHHHHh-hhhHHHHHHHHHHHHHHhhhhhhHHHHHHHhhCCCchhhHHHHHHhhhhhhHHhhhhHHHHHHHhhhh
Q 017754          214 VMAFALLYYAI-GWPGEIYVTTVLVGLSYGAHWAIVPAAASELFGLKSFGALYNFLTLASPAGSLIFSGVIASGIYDYYA  292 (366)
Q Consensus       214 ~~~~~~~l~~~-~~~~~l~~~~~l~G~~~g~~~~~~~~~~se~f~~~~~g~~~g~~~~~~~~G~~i~gp~l~G~l~d~~~  292 (366)
                      +.+++.++... .+...+++.+++.|++.|...+...+.+.|.++.++|+...++.+....+|+.+ +|.+.+++.+...
T Consensus        81 ~~~i~~~l~~~~~~~~~~~~~~~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~-~~~~~~~l~~~~~  159 (394)
T PRK03699         81 LMILAVAGLMFSHSLALFSIAMFVLGVVSGITMSIGTFLITHVYEGKQRGSRLLFTDSFFSMAGMI-FPIIAAYLLARSI  159 (394)
T ss_pred             HHHHHHHHHHHcchHHHHHHHHHHHHHhhHhhccchhHHhhhhcccchHHHHHHHHHHHHHHHHHH-HHHHHHHHHhccc
Confidence            66666555553 445567788889999988888888889999999999999999988888899886 8999888876432


Q ss_pred             hhhhhhhhhccCCCCCcccCCCCCCcccCCcchHHHHHHHHHHHHHHHHHH
Q 017754          293 EKQAGLLWKYNGNMLPVSFRDQETPTCLGSICYSITCGIMAGLCIIAMVMS  343 (366)
Q Consensus       293 ~~~~~~~~~~~~~~~~~~~~~~~~~~c~g~~~~~~~f~i~~~~~~~~~~~~  343 (366)
                                                     .||+.|.+.++++++..++.
T Consensus       160 -------------------------------gw~~~f~~~~~~~~~~~~~~  179 (394)
T PRK03699        160 -------------------------------EWYWVYACIGLVYVAIFILT  179 (394)
T ss_pred             -------------------------------cHHHHHHHHHHHHHHHHHHH
Confidence                                           29999998887666654443

>PRK03699 putative transporter; Provisional

Probab=99.49  E-value=3e-12  Score=125.54  Aligned_cols=178  Identities=16%  Similarity=0.159  Sum_probs=130.9

Q ss_pred             hhhHHHHHHHHHHhhhhHHHHHhcHHHHHH-HhCCChhHH--HHHHHHHHHhhhhhhhhhhhhhhhhhccCchhHHHHHH
Q 017754          135 KADFLLLFFSLVLASGSGLTVIDNLGQICQ-SLGYADTSI--YVSMISIWNFLGRVGGGYFSEAIVRKFAYPRPVAMAVA  211 (366)
Q Consensus       135 ~~~~~ll~~~~~~~~~~~~~~~~~l~~i~~-~~g~s~~~~--~vsl~~i~~~~g~~~~G~lsD~~grr~~~~R~~~~~~~  211 (366)
                      ++.+|++.+..++.......+..++|.+.+ .+|++..+.  ..+++.++..+|+++.|+++||+++|+..      ...
T Consensus       204 ~~~~~~~~~~~~~~~~~~~~~~~~~p~~l~~~~g~s~~~~~~~~~~~~~~~~ig~~~~g~l~dr~~~~~~l------~~~  277 (394)
T PRK03699        204 GIGVLFLAIAALLYILAQLTFISWVPEYAQKKFGMSLEDAGNLVSNFWMAYMVGMWIFSFIVRFFDLQRIL------TVL  277 (394)
T ss_pred             ChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCChHHhhHHHHHHHHHHHHHHHHHHHHHHHhchhhHH------HHH
Confidence            456777777777766666677889999985 579887655  77888899999999999999999887544      333


Q ss_pred             HHHHHHHHHHHH-hhhhHHHHHHHHHHHHHHhhhhhhHHHHHHHhhCCCchhhHHHHHHhhhhhhHHhhhhHHHHHHHhh
Q 017754          212 QVVMAFALLYYA-IGWPGEIYVTTVLVGLSYGAHWAIVPAAASELFGLKSFGALYNFLTLASPAGSLIFSGVIASGIYDY  290 (366)
Q Consensus       212 ~~~~~~~~~l~~-~~~~~~l~~~~~l~G~~~g~~~~~~~~~~se~f~~~~~g~~~g~~~~~~~~G~~i~gp~l~G~l~d~  290 (366)
                      ..+.++..+++. ..+...+.+..++.|++.++.++...+...+..+ ++++...+.......+|+.+ +|.+.|+++|.
T Consensus       278 ~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~-~~~~~~~g~~~~~~~~g~~i-~p~~~G~l~~~  355 (394)
T PRK03699        278 AGLALVLMYLFVNTDDPSHLLYAILGLGFFSSAIYTTIITLGSQQTK-VASPKLVNFILTCGTIGTML-TFVVTSPIVAH  355 (394)
T ss_pred             HHHHHHHHHHHHHcCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHcc-CCCHHHHHHHHHhhhHHHHH-HHHHHHHHHHH
Confidence            333333333333 3334445556677888888878877777777664 55678888888888999996 99999999998


Q ss_pred             hhhhhhhhhhhccCCCCCcccCCCCCCcccCCcchHHHHHHHHHHHHHHHHHHHHHhhhchH
Q 017754          291 YAEKQAGLLWKYNGNMLPVSFRDQETPTCLGSICYSITCGIMAGLCIIAMVMSLIVVHRTKS  352 (366)
Q Consensus       291 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~g~~~~~~~f~i~~~~~~~~~~~~~~~~~~~r~  352 (366)
                      .+                                ++..|++.+++++++.++.+.+.+-.|+
T Consensus       356 ~g--------------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~  385 (394)
T PRK03699        356 FG--------------------------------LQAALLTANGLYAVVFVMCILLGFVSKH  385 (394)
T ss_pred             hC--------------------------------chhhhhhhHHHHHHHHHHHHHHHHHHHH
Confidence            76                                8889998888888877666555443333

>PRK15402 multidrug efflux system translocase MdfA; Provisional

Probab=99.49  E-value=2.1e-12  Score=126.88  Aligned_cols=159  Identities=9%  Similarity=0.029  Sum_probs=125.1

Q ss_pred             hHHHHHhcHHHHHHHhCCChhHH--HHHHHHHHHhhhhhhhhhhhhhhhhhccCchhHHHHHHHHHHHHHHHHHH-hhhh
Q 017754          151 SGLTVIDNLGQICQSLGYADTSI--YVSMISIWNFLGRVGGGYFSEAIVRKFAYPRPVAMAVAQVVMAFALLYYA-IGWP  227 (366)
Q Consensus       151 ~~~~~~~~l~~i~~~~g~s~~~~--~vsl~~i~~~~g~~~~G~lsD~~grr~~~~R~~~~~~~~~~~~~~~~l~~-~~~~  227 (366)
                      ....+...+|++.+++|.+....  ..+.+.++..++.++.|+++||+|||+.+      ..+.++.+++.++.. ..+.
T Consensus        28 ~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~G~l~dr~g~r~~l------~~~~~~~~~~~~~~~~~~~~  101 (406)
T PRK15402         28 ANDMIQPGMLAVVEDFNAGAEWVPTSMTAYLAGGMFLQWLLGPLSDRIGRRPVM------LAGVAFFILTCLAILLAQSI  101 (406)
T ss_pred             hhhhHhcchHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCChHHH------HHHHHHHHHHHHHHHHHccH
Confidence            34455667888999999987665  77888899999999999999999997655      555555565555544 3445


Q ss_pred             HHHHHHHHHHHHHHhhhhhhHHHHHHHhhCCCchhhHHHHHHhhhhhhHHhhhhHHHHHHHhhhhhhhhhhhhhccCCCC
Q 017754          228 GEIYVTTVLVGLSYGAHWAIVPAAASELFGLKSFGALYNFLTLASPAGSLIFSGVIASGIYDYYAEKQAGLLWKYNGNML  307 (366)
Q Consensus       228 ~~l~~~~~l~G~~~g~~~~~~~~~~se~f~~~~~g~~~g~~~~~~~~G~~i~gp~l~G~l~d~~~~~~~~~~~~~~~~~~  307 (366)
                      ..+++.+++.|++.+...+...+.+.|.++.++++...++......+|..+ +|.+++.+.+..+               
T Consensus       102 ~~l~~~~~l~G~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~-g~~i~~~l~~~~~---------------  165 (406)
T PRK15402        102 EQFTLLRFLQGIGLCFIGAVGYAAIQESFEEADAIKITALMANVALLAPLL-GPLVGAALIHVLP---------------  165 (406)
T ss_pred             HHHHHHHHHHHhHhhhHHHHHHHHHHHHhChhHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHccC---------------
Confidence            567788889999988877888889999999999998889888888888885 9999999988665               


Q ss_pred             CcccCCCCCCcccCCcchHHHHHHHHHHHHHHHHHHHHHhh
Q 017754          308 PVSFRDQETPTCLGSICYSITCGIMAGLCIIAMVMSLIVVH  348 (366)
Q Consensus       308 ~~~~~~~~~~~c~g~~~~~~~f~i~~~~~~~~~~~~~~~~~  348 (366)
                                       |++.|++.+++++++.+......+
T Consensus       166 -----------------w~~~~~~~~~~~~~~~~~~~~~~~  189 (406)
T PRK15402        166 -----------------WRGMFVLFAALAALSFFGLWRAMP  189 (406)
T ss_pred             -----------------ccHHHHHHHHHHHHHHHHHHHhCC
Confidence                             999999988887776665544433

>PRK12307 putative sialic acid transporter; Provisional

Probab=99.49  E-value=3e-12  Score=126.36  Aligned_cols=148  Identities=14%  Similarity=0.104  Sum_probs=119.1

Q ss_pred             HHHHHHHHHHhhhhHHHHHhcHHHHHHHhCCChhHH--HHHHHHHHHhhhhhhhhhhhhhhhhhccCchhHHHHHHHHHH
Q 017754          138 FLLLFFSLVLASGSGLTVIDNLGQICQSLGYADTSI--YVSMISIWNFLGRVGGGYFSEAIVRKFAYPRPVAMAVAQVVM  215 (366)
Q Consensus       138 ~~ll~~~~~~~~~~~~~~~~~l~~i~~~~g~s~~~~--~vsl~~i~~~~g~~~~G~lsD~~grr~~~~R~~~~~~~~~~~  215 (366)
                      +...++.+++...........+|.+.+++|.+..+.  ..++..++..++.++.|+++||+|||+..      ..+.++.
T Consensus        20 ~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~~~~~~~~~~~~~~~l~~~~~g~l~dr~g~r~~l------~~~~~~~   93 (426)
T PRK12307         20 LFSAWLGYVFDGFDFMLIFYIMYLIKADLGLTDMEGAFLATAAFIGRPFGGALFGLLADKFGRKPLM------MWSIVAY   93 (426)
T ss_pred             HHHHHHHHHHHHhHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCChHHH------HHHHHHH
Confidence            444455555544445556667788889999987665  77888899999999999999999998765      6677777


Q ss_pred             HHHHHHHH-hhhhHHHHHHHHHHHHHHhhhhhhHHHHHHHhhCCCchhhHHHHHHhhhhhhHHhhhhHHHHHHHhhhh
Q 017754          216 AFALLYYA-IGWPGEIYVTTVLVGLSYGAHWAIVPAAASELFGLKSFGALYNFLTLASPAGSLIFSGVIASGIYDYYA  292 (366)
Q Consensus       216 ~~~~~l~~-~~~~~~l~~~~~l~G~~~g~~~~~~~~~~se~f~~~~~g~~~g~~~~~~~~G~~i~gp~l~G~l~d~~~  292 (366)
                      +++.++.. ..+...+++++++.|++.|..++....+++|.+++++|+.+.++...+..+|..+ +|.+.+.+.+..+
T Consensus        94 ~~~~~~~~~~~~~~~l~~~r~l~G~g~g~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~lg~~~-~~~l~~~l~~~~~  170 (426)
T PRK12307         94 SVGTGLSGLASGVIMLTLSRFIVGMGMAGEYACASTYAVESWPKHLKSKASAFLVSGFGIGNII-AAYFMPSFAEAYG  170 (426)
T ss_pred             HHHHHHHHHHhHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhCCHhHhhHhhhHHHHHHhHHHHH-HHHHHHHHcccCC
Confidence            77666655 3455678889999999999989988999999999999999999999999999996 8888888877665

>PRK11652 emrD multidrug resistance protein D; Provisional

Probab=99.48  E-value=2.4e-12  Score=125.95  Aligned_cols=172  Identities=9%  Similarity=0.105  Sum_probs=131.9

Q ss_pred             HHHHHHHHHHhhhhHHHHHhcHHHHHHHhCCChhHH--HHHHHHHHHhhhhhhhhhhhhhhhhhccCchhHHHHHHHHHH
Q 017754          138 FLLLFFSLVLASGSGLTVIDNLGQICQSLGYADTSI--YVSMISIWNFLGRVGGGYFSEAIVRKFAYPRPVAMAVAQVVM  215 (366)
Q Consensus       138 ~~ll~~~~~~~~~~~~~~~~~l~~i~~~~g~s~~~~--~vsl~~i~~~~g~~~~G~lsD~~grr~~~~R~~~~~~~~~~~  215 (366)
                      .++.....++.......+...+|++.+++|.+..+.  ..+...++..++.+++|+++||+|||+.+      ..+.++.
T Consensus        10 l~~~~~~~~~~~~~~~~~~p~~~~i~~~~~~s~~~~~~~~~~~~~~~~~~~~~~G~l~Dr~grr~~~------~~~~~~~   83 (394)
T PRK11652         10 LFMLVLLVAVGQMAQTIYVPAIADMARDLNVREGAVQAVMAAYLLTYGLSQLFYGPLSDRVGRRPVI------LVGMSIF   83 (394)
T ss_pred             HHHHHHHHHHHHHHHHHHhccHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHhhhhHHHhcCChHHH------HHHHHHH
Confidence            344444455555555566677899999999988765  78888999999999999999999997755      5555555


Q ss_pred             HHHHHHHH-hhhhHHHHHHHHHHHHHHhhhhhhHHHHHHHhhCCCchhhHHHHHHhhhhhhHHhhhhHHHHHHHhhhhhh
Q 017754          216 AFALLYYA-IGWPGEIYVTTVLVGLSYGAHWAIVPAAASELFGLKSFGALYNFLTLASPAGSLIFSGVIASGIYDYYAEK  294 (366)
Q Consensus       216 ~~~~~l~~-~~~~~~l~~~~~l~G~~~g~~~~~~~~~~se~f~~~~~g~~~g~~~~~~~~G~~i~gp~l~G~l~d~~~~~  294 (366)
                      +++.++.. ..+...+++.+++.|++.+...+.......|.++.++++.+.++.+++..++..+ +|.++|.+.+..+  
T Consensus        84 ~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-g~~i~~~l~~~~g--  160 (394)
T PRK11652         84 ILGTLVALFAHSLTVLIAASAIQGLGTGVGGVMARTLPRDLYEGTQLRHANSLLNMGILVSPLL-APLIGGLLTTLFG--  160 (394)
T ss_pred             HHHHHHHHHHccHHHHHHHHHHHHhhhhHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHhccC--
Confidence            65555544 3445567788889999888777777778899999899999999999999999985 9999999988765  


Q ss_pred             hhhhhhhccCCCCCcccCCCCCCcccCCcchHHHHHHHHHHHHHHHHHHHHHhh
Q 017754          295 QAGLLWKYNGNMLPVSFRDQETPTCLGSICYSITCGIMAGLCIIAMVMSLIVVH  348 (366)
Q Consensus       295 ~~~~~~~~~~~~~~~~~~~~~~~~c~g~~~~~~~f~i~~~~~~~~~~~~~~~~~  348 (366)
                                                    |++.|++.++++++..++..+..+
T Consensus       161 ------------------------------~~~~f~~~~~~~~~~~~~~~~~~~  184 (394)
T PRK11652        161 ------------------------------WRACYLFLLLLGAGVTFSMARWMP  184 (394)
T ss_pred             ------------------------------hHHHHHHHHHHHHHHHHHHHHhCC
Confidence                                          999999888766655544444433

>TIGR00891 2A0112 putative sialic acid transporter

Probab=99.48  E-value=3.7e-12  Score=123.97  Aligned_cols=148  Identities=13%  Similarity=0.193  Sum_probs=120.1

Q ss_pred             HHHHHHHHHHhhhhHHHHHhcHHHHHHHhCCChhHH--HHHHHHHHHhhhhhhhhhhhhhhhhhccCchhHHHHHHHHHH
Q 017754          138 FLLLFFSLVLASGSGLTVIDNLGQICQSLGYADTSI--YVSMISIWNFLGRVGGGYFSEAIVRKFAYPRPVAMAVAQVVM  215 (366)
Q Consensus       138 ~~ll~~~~~~~~~~~~~~~~~l~~i~~~~g~s~~~~--~vsl~~i~~~~g~~~~G~lsD~~grr~~~~R~~~~~~~~~~~  215 (366)
                      +...++.+++............|++.+++|++..+.  ..++..++..++.++.|+++||+|||+.+      ..+.++.
T Consensus        14 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~s~~~~g~~~~~~~~~~~~~~~~~G~l~Dr~g~r~~~------~~~~~~~   87 (405)
T TIGR00891        14 FSAAWLGWLLDAFDFFLVALVLAEVAGEFGLTTVDAASLISAALISRWFGALMFGLWGDRYGRRLPM------VTSIVLF   87 (405)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHH------HHHHHHH
Confidence            344555666666666667777888999999987765  78888999999999999999999998755      5566666


Q ss_pred             HHHHHHHH-hhhhHHHHHHHHHHHHHHhhhhhhHHHHHHHhhCCCchhhHHHHHHhhhhhhHHhhhhHHHHHHHhhhh
Q 017754          216 AFALLYYA-IGWPGEIYVTTVLVGLSYGAHWAIVPAAASELFGLKSFGALYNFLTLASPAGSLIFSGVIASGIYDYYA  292 (366)
Q Consensus       216 ~~~~~l~~-~~~~~~l~~~~~l~G~~~g~~~~~~~~~~se~f~~~~~g~~~g~~~~~~~~G~~i~gp~l~G~l~d~~~  292 (366)
                      +++.++.. ..+...+++.+++.|++.+..++...+++.|.++.++++.+.++.++...+|..+ +|.+.+.+.+..+
T Consensus        88 ~~~~~~~~~~~~~~~l~~~~~l~G~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~g~~~-~~~l~~~l~~~~~  164 (405)
T TIGR00891        88 SAGTLACGFAPGYITMFIARLVIGIGMGGEYGSSAAYVIESWPKHLRNKASGLLISGYAVGAVV-AAQVYSLVVPVWG  164 (405)
T ss_pred             HHHHHHHHHhccHHHHHHHHHHHHhhhhhhhHHHHHHHHHhCChhhhhHHHHHHHHHHHHHHHH-HHHHHHHHHHhcC
Confidence            66665554 3455677888999999999988989999999999999999999999999999996 9999998877653

>cd06174 MFS The Major Facilitator Superfamily (MFS) is a large and diverse group of secondary transporters that includes uniporters, symporters, and antiporters

Probab=99.48  E-value=2.4e-12  Score=122.12  Aligned_cols=169  Identities=22%  Similarity=0.287  Sum_probs=137.1

Q ss_pred             HHHHHHHHHhhhhHHHHHhcHHHHHHHhCCChhHH--HHHHHHHHHhhhhhhhhhhhhhhhhhccCchhHHHHHHHHHHH
Q 017754          139 LLLFFSLVLASGSGLTVIDNLGQICQSLGYADTSI--YVSMISIWNFLGRVGGGYFSEAIVRKFAYPRPVAMAVAQVVMA  216 (366)
Q Consensus       139 ~ll~~~~~~~~~~~~~~~~~l~~i~~~~g~s~~~~--~vsl~~i~~~~g~~~~G~lsD~~grr~~~~R~~~~~~~~~~~~  216 (366)
                      |.+.+..++...........+|.+.+++|.+..+.  ..+...++..++.++.|+++||++||+..      ..+.++..
T Consensus         2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~d~~g~r~~~------~~~~~~~~   75 (352)
T cd06174           2 LLLFLGFFLSGLDRGLLSPALPLLAEDLGLSASQAGLIVSAFSLGYALGSLLAGYLSDRFGRRRVL------LLGLLLFA   75 (352)
T ss_pred             HHHHHHHHHHHHhhhhhHhhHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHhHHHHHHHhCCchhh------HHHHHHHH
Confidence            34445555555555666777888999999887665  78888899999999999999999998755      66667777


Q ss_pred             HHHHHHHh-hhhHHHHHHHHHHHHHHhhhhhhHHHHHHHhhCCCchhhHHHHHHhhhhhhHHhhhhHHHHHHHhhhhhhh
Q 017754          217 FALLYYAI-GWPGEIYVTTVLVGLSYGAHWAIVPAAASELFGLKSFGALYNFLTLASPAGSLIFSGVIASGIYDYYAEKQ  295 (366)
Q Consensus       217 ~~~~l~~~-~~~~~l~~~~~l~G~~~g~~~~~~~~~~se~f~~~~~g~~~g~~~~~~~~G~~i~gp~l~G~l~d~~~~~~  295 (366)
                      ++.++... .+...+++..++.|++.+..++...++++|++++++|++..++......+|..+ +|.+++.+.+..+   
T Consensus        76 ~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~-~~~~~~~~~~~~~---  151 (352)
T cd06174          76 LGSLLLAFASSLWLLLVGRFLLGLGGGALYPAAAALIAEWFPPKERGRALGLFSAGFGLGALL-GPLLGGLLAESLG---  151 (352)
T ss_pred             HHHHHHHHhccHHHHHHHHHHHHcccccccHhHHHHHHHhCCccchhhhhhHHHHHHHHHHHH-HHHHHHHHHHHhh---
Confidence            76666553 455677888899999999989999999999999999999999999999999996 9999999998876   


Q ss_pred             hhhhhhccCCCCCcccCCCCCCcccCCcchHHHHHHHHHHHHHHHHHHHHH
Q 017754          296 AGLLWKYNGNMLPVSFRDQETPTCLGSICYSITCGIMAGLCIIAMVMSLIV  346 (366)
Q Consensus       296 ~~~~~~~~~~~~~~~~~~~~~~~c~g~~~~~~~f~i~~~~~~~~~~~~~~~  346 (366)
                                                   |++.|++.+++.+++.+....+
T Consensus       152 -----------------------------~~~~~~~~~~~~~~~~~~~~~~  173 (352)
T cd06174         152 -----------------------------WRWLFLILAILGLLLALLLLFL  173 (352)
T ss_pred             -----------------------------HHHHHHHHHHHHHHHHHHHHHH
Confidence                                         9999988887777766555443

MFS proteins facilitate the transport across cytoplasmic or internal membranes of a variety of substrates including ions, sugar phosphates, drugs, neurotransmitters, nucleosides, amino acids, and peptides. They do so using the electrochemical potential of the transported substrates. Uniporters transport a single substrate, while symporters and antiporters transport two substrates in the same or in opposite directions, respectively, across membranes. MFS proteins are typically 400 to 600 amino acids in length, and the majority contain 12 transmembrane alpha helices (TMs) connected by hydrophilic loops. The N- and C-terminal halves of these proteins display weak similarity and may be the result of a gene duplication/fusion event. Based on kinetic studies and the structures of a few bacterial superfamily members, GlpT (glycerol-3

>PRK15034 nitrate/nitrite transport protein NarU; Provisional

Probab=99.48  E-value=1.4e-12  Score=129.90  Aligned_cols=184  Identities=13%  Similarity=0.099  Sum_probs=129.6

Q ss_pred             CHHHHhhhhhHHHHHHHHHHhhhhHHHHHhcHHHHHHHhCCChhHH--HHHHHHHHHhhhhhhhhhhhhhhhhhccCchh
Q 017754          128 TLPQALMKADFLLLFFSLVLASGSGLTVIDNLGQICQSLGYADTSI--YVSMISIWNFLGRVGGGYFSEAIVRKFAYPRP  205 (366)
Q Consensus       128 ~~~~~l~~~~~~ll~~~~~~~~~~~~~~~~~l~~i~~~~g~s~~~~--~vsl~~i~~~~g~~~~G~lsD~~grr~~~~R~  205 (366)
                      +..+.+|+++.|++.+.+++..+...++..++|++.++ .++....  ...+..+...++|+++|+++||+|+++..   
T Consensus       244 ~~~~vlk~~~~Wllslly~~tFG~fvg~s~~lp~~~~~-~~~~~~~l~~~~l~~l~~~l~rplgG~LADRiG~~~vl---  319 (462)
T PRK15034        244 DQLPVLQRLHLWLLSLLYLATFGSFIGFSAGFAMLAKT-QFPDVNILRLAFFGPFIGAIARSVGGAISDKFGGVRVT---  319 (462)
T ss_pred             HHHHHhCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHH-HcChHHHHHHHHHHHHHHHHHHHhhHHHHHhcCchHHH---
Confidence            35678899999999999999988888888899999876 4444333  45556788899999999999999987655   


Q ss_pred             HHHHHHHHHHHHHHHH--HHhh-----hhHHHHHHHHHHHHHHhhhhhhHHHHHHHhhCC--------------------
Q 017754          206 VAMAVAQVVMAFALLY--YAIG-----WPGEIYVTTVLVGLSYGAHWAIVPAAASELFGL--------------------  258 (366)
Q Consensus       206 ~~~~~~~~~~~~~~~l--~~~~-----~~~~l~~~~~l~G~~~g~~~~~~~~~~se~f~~--------------------  258 (366)
                         .++.+++.++...  +..+     +.....+..+...++.|......+-+++++|+.                    
T Consensus       320 ---~~~~i~~~i~~~~~~l~lp~~~~~~~~~~~~~~~~l~~~~G~gngsvfk~ip~~f~~~~~~~~~~~~~~~~~~~~~~  396 (462)
T PRK15034        320 ---LINFIFMAIFSALLFLTLPGTGSGNFIAFYAVFMGLFLTAGLGSGSTFQMIAVIFRQITIYRVKMKGGSDEQAQREA  396 (462)
T ss_pred             ---HHHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHhcccchHHHHhhHHHHhhhhhhcccccccchhHHhhHH
Confidence               3333333332211  1111     111122222222233444444455566666653                    


Q ss_pred             -CchhhHHHHHHhhhhhhHHhhhhHHHHHHHhhhhhhhhhhhhhccCCCCCcccCCCCCCcccCCcchHHHHHHHHHHHH
Q 017754          259 -KSFGALYNFLTLASPAGSLIFSGVIASGIYDYYAEKQAGLLWKYNGNMLPVSFRDQETPTCLGSICYSITCGIMAGLCI  337 (366)
Q Consensus       259 -~~~g~~~g~~~~~~~~G~~i~gp~l~G~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~g~~~~~~~f~i~~~~~~  337 (366)
                       ++.|...|+....+.+|+++ -|++.|..++.++                               +|...|++..+..+
T Consensus       397 ~~~~g~v~G~v~a~G~~Ggf~-~p~~~g~~~~~~g-------------------------------~~~~~~~~~~~~~~  444 (462)
T PRK15034        397 VTETAAALGFISAIGAVGGFF-IPQAFGMSLNMTG-------------------------------SPVGAMKVFLIFYI  444 (462)
T ss_pred             HHHHHHHHHHHHHHHHcccch-hhHHHHHHHHHcC-------------------------------CcHHHHHHHHHHHH
Confidence             26789999999999999996 6999999999887                               48999999999999


Q ss_pred             HHHHHHHHHhhhc
Q 017754          338 IAMVMSLIVVHRT  350 (366)
Q Consensus       338 ~~~~~~~~~~~~~  350 (366)
                      ++.++.++.+.|+
T Consensus       445 ~~~~~~w~~y~r~  457 (462)
T PRK15034        445 VCVLLTWLVYGRR  457 (462)
T ss_pred             HHHHHHHHHhccC
Confidence            9998888876554

>TIGR00895 2A0115 benzoate transport

Probab=99.48  E-value=1e-12  Score=127.24  Aligned_cols=166  Identities=14%  Similarity=0.111  Sum_probs=128.5

Q ss_pred             HHHHhhhhHHHHHhcHHHHHHHhCCChhHH--HHHHHHHHHhhhhhhhhhhhhhhhhhccCchhHHHHHHHHHHHHHHHH
Q 017754          144 SLVLASGSGLTVIDNLGQICQSLGYADTSI--YVSMISIWNFLGRVGGGYFSEAIVRKFAYPRPVAMAVAQVVMAFALLY  221 (366)
Q Consensus       144 ~~~~~~~~~~~~~~~l~~i~~~~g~s~~~~--~vsl~~i~~~~g~~~~G~lsD~~grr~~~~R~~~~~~~~~~~~~~~~l  221 (366)
                      .+++...........+|.+.+++|++....  ..++..++..++.++.|+++||++||+..      ..+.++.+++.++
T Consensus        25 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~------~~~~~~~~~~~~~   98 (398)
T TIGR00895        25 IMLMDGYDLAAMGFAAPAISAEWGLDPVQLGFLFSAGLIGMAFGALFFGPLADRIGRKRVL------LWSILLFSVFTLL   98 (398)
T ss_pred             HHHHHHHHHHHHHhhHHHHhhccCCCHHHHHHHHHHHHHHHHHHHHHhHHHHHHhhhHHHH------HHHHHHHHHHHHH
Confidence            333333334455567888889999987665  67788888999999999999999987655      5555555555555


Q ss_pred             HH-hhhhHHHHHHHHHHHHHHhhhhhhHHHHHHHhhCCCchhhHHHHHHhhhhhhHHhhhhHHHHHHHhhhhhhhhhhhh
Q 017754          222 YA-IGWPGEIYVTTVLVGLSYGAHWAIVPAAASELFGLKSFGALYNFLTLASPAGSLIFSGVIASGIYDYYAEKQAGLLW  300 (366)
Q Consensus       222 ~~-~~~~~~l~~~~~l~G~~~g~~~~~~~~~~se~f~~~~~g~~~g~~~~~~~~G~~i~gp~l~G~l~d~~~~~~~~~~~  300 (366)
                      .. ..+...+++..++.|++.+..++...++++|.++.++++.+.++......+|..+ +|.++|++.+..+        
T Consensus        99 ~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~-~~~~~~~l~~~~g--------  169 (398)
T TIGR00895        99 CALATNVTQLLILRFLAGLGLGGLMPNLNALVSEYAPKRFRGTAVGLMFCGYPIGAAV-GGFLAGWLIPVFG--------  169 (398)
T ss_pred             HHHccchHHHHHHHHHHhcccccchhhHHHHHHHHcCHHhhchhHhhHhhHHHHHHHH-HHHHHHHHhhccc--------
Confidence            44 3445567778889999999989999999999999999999999999999999996 9999999988766        


Q ss_pred             hccCCCCCcccCCCCCCcccCCcchHHHHHHHHHHHHHHHHHHHHHhh
Q 017754          301 KYNGNMLPVSFRDQETPTCLGSICYSITCGIMAGLCIIAMVMSLIVVH  348 (366)
Q Consensus       301 ~~~~~~~~~~~~~~~~~~c~g~~~~~~~f~i~~~~~~~~~~~~~~~~~  348 (366)
                                              |+..|++.++++++..++.+.+.+
T Consensus       170 ------------------------~~~~~~~~~~~~~~~~~~~~~~~~  193 (398)
T TIGR00895       170 ------------------------WRSLFYVGGIAPLLLLLLLMRFLP  193 (398)
T ss_pred             ------------------------ceeehhhhhhHHHHHHHHHHHhCC
Confidence                                    888888887666665555544443

>PRK09874 drug efflux system protein MdtG; Provisional

Probab=99.47  E-value=5.4e-12  Score=123.52  Aligned_cols=172  Identities=15%  Similarity=0.160  Sum_probs=130.8

Q ss_pred             hHHHHHHHHHHhhhhHHHHHhcHHHHHHHhCCChhH-------HHHHHHHHHHhhhhhhhhhhhhhhhhhccCchhHHHH
Q 017754          137 DFLLLFFSLVLASGSGLTVIDNLGQICQSLGYADTS-------IYVSMISIWNFLGRVGGGYFSEAIVRKFAYPRPVAMA  209 (366)
Q Consensus       137 ~~~ll~~~~~~~~~~~~~~~~~l~~i~~~~g~s~~~-------~~vsl~~i~~~~g~~~~G~lsD~~grr~~~~R~~~~~  209 (366)
                      .+..++++.++.......+...+|.+.+++|.+..+       ...++..+...++.+++|+++||++||+..      .
T Consensus        15 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~------~   88 (408)
T PRK09874         15 NLTVAWLGCFLTGAAFSLVMPFLPLYVEQLGVTGHSALNMWSGLVFSITFLFSAIASPFWGGLADRKGRKIML------L   88 (408)
T ss_pred             HHHHHHHHHHHHHHHHHHhhhhHHHHHHHhCCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhCcHHHH------H
Confidence            455666666666655556677899999999887432       256777888899999999999999987654      4


Q ss_pred             HHHHHHHHHHHHHH-hhhhHHHHHHHHHHHHHHhhhhhhHHHHHHHhhCCCchhhHHHHHHhhhhhhHHhhhhHHHHHHH
Q 017754          210 VAQVVMAFALLYYA-IGWPGEIYVTTVLVGLSYGAHWAIVPAAASELFGLKSFGALYNFLTLASPAGSLIFSGVIASGIY  288 (366)
Q Consensus       210 ~~~~~~~~~~~l~~-~~~~~~l~~~~~l~G~~~g~~~~~~~~~~se~f~~~~~g~~~g~~~~~~~~G~~i~gp~l~G~l~  288 (366)
                      .+.++.+++.+++. ..+...+++.+++.|++.+ ..+.....+.+.++.++++.+.++.+....+|..+ +|.++|.+.
T Consensus        89 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~-~~~~~~~l~  166 (408)
T PRK09874         89 RSALGMGIVMVLMGLAQNIWQFLILRALLGLLGG-FVPNANALIATQVPRNKSGWALGTLSTGGVSGALL-GPLAGGLLA  166 (408)
T ss_pred             HHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhh-hHHhHHHHHHHhcCHhhhhHHHHHHHHHHHHHHHH-HHHHHHHHH
Confidence            55555556655544 3445567778888888754 45666678889999999999999999999999996 999999998


Q ss_pred             hhhhhhhhhhhhhccCCCCCcccCCCCCCcccCCcchHHHHHHHHHHHHHHHHHHHHHhh
Q 017754          289 DYYAEKQAGLLWKYNGNMLPVSFRDQETPTCLGSICYSITCGIMAGLCIIAMVMSLIVVH  348 (366)
Q Consensus       289 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~g~~~~~~~f~i~~~~~~~~~~~~~~~~~  348 (366)
                      +..+                                |+++|++.+++.+++.+..+++.+
T Consensus       167 ~~~~--------------------------------~~~~~~~~~~~~~~~~~~~~~~~~  194 (408)
T PRK09874        167 DSYG--------------------------------LRPVFFITASVLFLCFLVTLFCIR  194 (408)
T ss_pred             HHhC--------------------------------HHHHHHHHHHHHHHHHHHHHHHhc
Confidence            8776                                999999988877776665555443

>PRK11102 bicyclomycin/multidrug efflux system; Provisional

Probab=99.47  E-value=1.9e-12  Score=125.56  Aligned_cols=158  Identities=18%  Similarity=0.241  Sum_probs=129.6

Q ss_pred             HHHHhcHHHHHHHhCCChhHH--HHHHHHHHHhhhhhhhhhhhhhhhhhccCchhHHHHHHHHHHHHHHHHHH-hhhhHH
Q 017754          153 LTVIDNLGQICQSLGYADTSI--YVSMISIWNFLGRVGGGYFSEAIVRKFAYPRPVAMAVAQVVMAFALLYYA-IGWPGE  229 (366)
Q Consensus       153 ~~~~~~l~~i~~~~g~s~~~~--~vsl~~i~~~~g~~~~G~lsD~~grr~~~~R~~~~~~~~~~~~~~~~l~~-~~~~~~  229 (366)
                      ..+...+|.+.+++|.+..+.  ..+...++..++++.+|+++||+|||+..      ..+.++.+++.+++. ..+...
T Consensus         8 ~~~~p~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~------~~~~~~~~i~~~~~~~~~~~~~   81 (377)
T PRK11102          8 DMYLPALPVIAADFGVSAGSVQMTLSAYILGFAIGQLFYGPMADSFGRKPVI------LGGTLVFALAAVACALAQTIDQ   81 (377)
T ss_pred             HHHhccHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHhhchHHhhcCChHHH------HHHHHHHHHHHHHHHHHccHHH
Confidence            345678899999999987765  77888899999999999999999987655      666666666666655 344556


Q ss_pred             HHHHHHHHHHHHhhhhhhHHHHHHHhhCCCchhhHHHHHHhhhhhhHHhhhhHHHHHHHhhhhhhhhhhhhhccCCCCCc
Q 017754          230 IYVTTVLVGLSYGAHWAIVPAAASELFGLKSFGALYNFLTLASPAGSLIFSGVIASGIYDYYAEKQAGLLWKYNGNMLPV  309 (366)
Q Consensus       230 l~~~~~l~G~~~g~~~~~~~~~~se~f~~~~~g~~~g~~~~~~~~G~~i~gp~l~G~l~d~~~~~~~~~~~~~~~~~~~~  309 (366)
                      +++..++.|++.+...+...++++|.++.+++++..++.+....+|..+ +|.+++.+.+..+                 
T Consensus        82 ~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~-~~~~~~~l~~~~~-----------------  143 (377)
T PRK11102         82 LIYMRFLHGLAAAAASVVINALMRDMFPKEEFSRMMSFVTLVMTIAPLL-APIIGGWLLVWFS-----------------  143 (377)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHcC-----------------
Confidence            7788889999999888888899999999999999999999999999996 9999999988776                 


Q ss_pred             ccCCCCCCcccCCcchHHHHHHHHHHHHHHHHHHHHHhhh
Q 017754          310 SFRDQETPTCLGSICYSITCGIMAGLCIIAMVMSLIVVHR  349 (366)
Q Consensus       310 ~~~~~~~~~c~g~~~~~~~f~i~~~~~~~~~~~~~~~~~~  349 (366)
                                     |++.|++.++++++..++.....++
T Consensus       144 ---------------~~~~~~~~~~~~~~~~~~~~~~~~~  168 (377)
T PRK11102        144 ---------------WHAIFWVLALAAILAAALVFFFIPE  168 (377)
T ss_pred             ---------------hHHHHHHHHHHHHHHHHHHHHhCCc
Confidence                           9999999888877776665544433

>PRK15462 dipeptide/tripeptide permease D; Provisional

Probab=99.47  E-value=2.2e-12  Score=129.71  Aligned_cols=149  Identities=15%  Similarity=0.217  Sum_probs=115.4

Q ss_pred             hHHHHHHHHHHhhhhHHHHHhcHHHHHH-HhCCChhHH--HHHHHHHHHhhhhhhhhhhhhhh-hhhccCchhHHHHHHH
Q 017754          137 DFLLLFFSLVLASGSGLTVIDNLGQICQ-SLGYADTSI--YVSMISIWNFLGRVGGGYFSEAI-VRKFAYPRPVAMAVAQ  212 (366)
Q Consensus       137 ~~~ll~~~~~~~~~~~~~~~~~l~~i~~-~~g~s~~~~--~vsl~~i~~~~g~~~~G~lsD~~-grr~~~~R~~~~~~~~  212 (366)
                      .+|.++...++.....+++..++|.+.. .+|++..++  ..+.+.+...++.+++|+++||+ |||+..      .++.
T Consensus        10 ~l~~l~~~~~~e~fs~Yg~~~~L~~yL~~~lgls~~~a~~i~~~~~~~~~l~~ligG~LaDRilGrrr~i------liG~   83 (493)
T PRK15462         10 AIYYVVALQIWEYFSFYGMRALLILYLTNQLKYDDNHAYELFSAYCSLVYVTPILGGFLADKVLGNRMAV------MLGA   83 (493)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCcHHHH------HHHH
Confidence            4666666666666677777788888875 479987765  77777788889999999999999 998765      6777


Q ss_pred             HHHHHHHHHHHhh--hhHHHHHHHHHHHHHHhhhhhhHHHHHHHhhCCC--chhhHHHHHHhhhhhhHHhhhhHHHHHHH
Q 017754          213 VVMAFALLYYAIG--WPGEIYVTTVLVGLSYGAHWAIVPAAASELFGLK--SFGALYNFLTLASPAGSLIFSGVIASGIY  288 (366)
Q Consensus       213 ~~~~~~~~l~~~~--~~~~l~~~~~l~G~~~g~~~~~~~~~~se~f~~~--~~g~~~g~~~~~~~~G~~i~gp~l~G~l~  288 (366)
                      ++++++++++...  .+..++++..+.++|.|...+...++++|.|+++  .|.+++++.++..++|+.+ +|.+.|++.
T Consensus        84 il~~lg~lll~~~~~~~~~~~l~l~li~iG~G~~~~~~~alv~elfp~~~~~R~sgf~i~Y~~~nlG~~i-ap~l~g~L~  162 (493)
T PRK15462         84 LLMAIGHVVLGASEIHPSFLYLSLAIIVCGYGLFKSNVSCLLGELYEPTDPRRDGGFSLMYAAGNVGSII-APIACGYAQ  162 (493)
T ss_pred             HHHHHHHHHHHHhhcchhHHHHHHHHHHHhcccccccHHHHHHHHCCCCCccccceehHHHHHHHHHHHH-HHHHHHHHH
Confidence            7777777666532  2233455555566677766677788999999876  6999999999999999996 999999998


Q ss_pred             hhhh
Q 017754          289 DYYA  292 (366)
Q Consensus       289 d~~~  292 (366)
                      +..+
T Consensus       163 ~~~G  166 (493)
T PRK15462        163 EEYS  166 (493)
T ss_pred             hhhC
Confidence            8776

>PRK12382 putative transporter; Provisional

Probab=99.47  E-value=7e-12  Score=122.58  Aligned_cols=154  Identities=12%  Similarity=0.049  Sum_probs=119.9

Q ss_pred             HHHhcHHHHHHHhCCChhHHHHHHHHHHHhhhhhhhhhhhhhhhhhccCchhHHHHHHHHHHHHHHHHHH-hhhhHHHHH
Q 017754          154 TVIDNLGQICQSLGYADTSIYVSMISIWNFLGRVGGGYFSEAIVRKFAYPRPVAMAVAQVVMAFALLYYA-IGWPGEIYV  232 (366)
Q Consensus       154 ~~~~~l~~i~~~~g~s~~~~~vsl~~i~~~~g~~~~G~lsD~~grr~~~~R~~~~~~~~~~~~~~~~l~~-~~~~~~l~~  232 (366)
                      ....+.+.+.++.|++......+...++..++++..|+++||+++|+..      ..+..+++++++++. ..+....++
T Consensus       234 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~~r~g~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~  307 (392)
T PRK12382        234 VIGTFVSLYFASKGWAMAGFTLTAFGGAFVLMRVLFGWMPDRFGGVKVA------IVSLLVETVGLLLLWLAPTAWVALA  307 (392)
T ss_pred             HHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHHHHHHHHHHhcCCCeeh------HHHHHHHHHHHHHHHHcccHHHHHH
Confidence            3445667777777776554456667778889999999999999987665      455555555555544 233445566


Q ss_pred             HHHHHHHHHhhhhhhHHHHHHHhhCCCchhhHHHHHHhhhhhhHHhhhhHHHHHHHhhhhhhhhhhhhhccCCCCCcccC
Q 017754          233 TTVLVGLSYGAHWAIVPAAASELFGLKSFGALYNFLTLASPAGSLIFSGVIASGIYDYYAEKQAGLLWKYNGNMLPVSFR  312 (366)
Q Consensus       233 ~~~l~G~~~g~~~~~~~~~~se~f~~~~~g~~~g~~~~~~~~G~~i~gp~l~G~l~d~~~~~~~~~~~~~~~~~~~~~~~  312 (366)
                      +.++.|++.+..++...+.+.+.++++++|+.+|+.+....+|..+ +|.+.|++.|..+                    
T Consensus       308 ~~~l~g~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~i-g~~~~g~l~~~~g--------------------  366 (392)
T PRK12382        308 GAALTGAGCSLIFPALGVEVVKRVPSQVRGTALGGYAAFQDIAYGV-SGPLAGMLATSFG--------------------  366 (392)
T ss_pred             HHHHHHHHHHhHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHhC--------------------
Confidence            7778888888877777888899999999999999999999999996 9999999999887                    


Q ss_pred             CCCCCcccCCcchHHHHHHHHHHHHHHHHHHHHH
Q 017754          313 DQETPTCLGSICYSITCGIMAGLCIIAMVMSLIV  346 (366)
Q Consensus       313 ~~~~~~c~g~~~~~~~f~i~~~~~~~~~~~~~~~  346 (366)
                                  |+..|++.+++.+++.++.+..
T Consensus       367 ------------~~~~~~~~~~~~~~~~~~~~~~  388 (392)
T PRK12382        367 ------------YPSVFLAGAISAVLGIIVTILS  388 (392)
T ss_pred             ------------chHHHHHHHHHHHHHHHHHHhh
Confidence                        9999999888777776665443

>PRK09584 tppB putative tripeptide transporter permease; Reviewed

Probab=99.47  E-value=4.2e-12  Score=128.75  Aligned_cols=172  Identities=15%  Similarity=0.187  Sum_probs=129.6

Q ss_pred             Hhhhh-hHHHHHHHHHHhhhhHHHHHhcHHHHH-HHhCCChhHH--HHHHHHHHHhhhhhhhhhhhhh-hhhhccCchhH
Q 017754          132 ALMKA-DFLLLFFSLVLASGSGLTVIDNLGQIC-QSLGYADTSI--YVSMISIWNFLGRVGGGYFSEA-IVRKFAYPRPV  206 (366)
Q Consensus       132 ~l~~~-~~~ll~~~~~~~~~~~~~~~~~l~~i~-~~~g~s~~~~--~vsl~~i~~~~g~~~~G~lsD~-~grr~~~~R~~  206 (366)
                      .++++ .+|.+++..++.....+.+..+++.+. +++|++..+.  ..+.+........+++|+++|| +|||+.+    
T Consensus        16 ~~~~p~~~~~~~~~~~~~~~~~y~~~~~l~~yl~~~lg~s~~~a~~~~~~~~~~~~~~~~~~G~LaDr~~G~r~~~----   91 (500)
T PRK09584         16 AFKQPKAFYLIFSIELWERFGYYGLQGIMAVYLVKQLGMSEADSITLFSSFSALVYGLVAIGGWLGDKVLGTKRVI----   91 (500)
T ss_pred             hhcCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchHHHH----
Confidence            34555 488888888888777777778888877 6689987665  4444444555556789999999 5998765    


Q ss_pred             HHHHHHHHHHHHHHHHHhh--hhHHHHHHHHHHHHHHhhhhhhHHHHHHHhhCCCc--hhhHHHHHHhhhhhhHHhhhhH
Q 017754          207 AMAVAQVVMAFALLYYAIG--WPGEIYVTTVLVGLSYGAHWAIVPAAASELFGLKS--FGALYNFLTLASPAGSLIFSGV  282 (366)
Q Consensus       207 ~~~~~~~~~~~~~~l~~~~--~~~~l~~~~~l~G~~~g~~~~~~~~~~se~f~~~~--~g~~~g~~~~~~~~G~~i~gp~  282 (366)
                        ..+.++++++++++...  ....++++.+++|+|.|...+...++++|.|+.+.  ++.++++.+++.++|+.+ ||.
T Consensus        92 --~~g~~~~~ig~~l~~~~~~~~~~l~~~~~l~gig~g~~~~~~~~l~~~~f~~~~~~~~~~~~~~~~~~~iG~~~-gp~  168 (500)
T PRK09584         92 --MLGAIVLAIGYALVAWSGHDAGIVYMGMATIAVGNGLFKANPSSLLSTCYEKDDPRLDGAFTMYYMSINIGSFF-SML  168 (500)
T ss_pred             --HHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHhhhcccCCHHHHHHHhcCCCchhhhhcchHHHHHHHHHHHH-HHH
Confidence              66777777777666543  23345667788899988878888889999998653  556889999999999996 999


Q ss_pred             HHHHHHhhhhhhhhhhhhhccCCCCCcccCCCCCCcccCCcchHHHHHHHHHHHHHHHHH
Q 017754          283 IASGIYDYYAEKQAGLLWKYNGNMLPVSFRDQETPTCLGSICYSITCGIMAGLCIIAMVM  342 (366)
Q Consensus       283 l~G~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~g~~~~~~~f~i~~~~~~~~~~~  342 (366)
                      +.|++.|..+                                |++.|++.++..+++.+.
T Consensus       169 i~g~l~~~~g--------------------------------~~~~F~i~~i~~~i~~i~  196 (500)
T PRK09584        169 ATPWLAAKYG--------------------------------WSVAFALSVVGMLITVVN  196 (500)
T ss_pred             HHHHHHHhhC--------------------------------HHHHHHHHHHHHHHHHHH
Confidence            9999998876                                999999877655555443

>TIGR01299 synapt_SV2 synaptic vesicle protein SV2

Probab=99.46  E-value=2.5e-12  Score=135.03  Aligned_cols=137  Identities=12%  Similarity=0.125  Sum_probs=106.1

Q ss_pred             HHHHHHHHhhhhhhhhhhhhhhhhhccCchhHHHHHHHHHHHHHHHHHHh-hhhHHHHHHHHHHHHHHhhhhhhHHHHHH
Q 017754          175 VSMISIWNFLGRVGGGYFSEAIVRKFAYPRPVAMAVAQVVMAFALLYYAI-GWPGEIYVTTVLVGLSYGAHWAIVPAAAS  253 (366)
Q Consensus       175 vsl~~i~~~~g~~~~G~lsD~~grr~~~~R~~~~~~~~~~~~~~~~l~~~-~~~~~l~~~~~l~G~~~g~~~~~~~~~~s  253 (366)
                      ..+.+++.++|.+++|+++||+|||+.+      .++.++.+++.+++.. .+...+++..++.|++.++.++...++++
T Consensus       601 ~~l~~l~~i~G~il~g~L~Dr~GRr~~l------~~~~~lsai~~ll~~~~~s~~~ll~~~~l~g~~~~~~~~~~~a~~a  674 (742)
T TIGR01299       601 NFLGTLAVLPGNIVSALLMDKIGRLRML------AGSMVLSCISCFFLSFGNSESAMIALLCLFGGLSIAAWNALDVLTV  674 (742)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhCCHHHH------HHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            4456688889999999999999998765      6666666666665553 23344555666778887888899999999


Q ss_pred             HhhCCCchhhHHHHHHhhhhhhHHhhhhHHHHHHHhhhhhhhhhhhhhccCCCCCcccCCCCCCcccCCcchHHHHHHHH
Q 017754          254 ELFGLKSFGALYNFLTLASPAGSLIFSGVIASGIYDYYAEKQAGLLWKYNGNMLPVSFRDQETPTCLGSICYSITCGIMA  333 (366)
Q Consensus       254 e~f~~~~~g~~~g~~~~~~~~G~~i~gp~l~G~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~g~~~~~~~f~i~~  333 (366)
                      |+||++.|++++|+.++...+|+++ ||.++|.+.+..                                 ....|++.+
T Consensus       675 El~Pt~~Rgta~Gi~~~~~rlGaii-gp~i~g~L~~~~---------------------------------~~~pf~i~a  720 (742)
T TIGR01299       675 ELYPSDKRATAFGFLNALCKAAAVL-GILIFGSFVGIT---------------------------------KAAPILFAS  720 (742)
T ss_pred             HHcCHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHhh---------------------------------hHHHHHHHH
Confidence            9999999999999999999999996 999999887642                                 456777777


Q ss_pred             HHHHHHHHHHHHHhhhchH
Q 017754          334 GLCIIAMVMSLIVVHRTKS  352 (366)
Q Consensus       334 ~~~~~~~~~~~~~~~~~r~  352 (366)
                      ++.++++++.+++ +++|+
T Consensus       721 ~~lll~~ll~~~L-PET~~  738 (742)
T TIGR01299       721 AALACGGLLALKL-PDTRG  738 (742)
T ss_pred             HHHHHHHHHHHhC-CCCcc
Confidence            7777766665544 56654

This model describes a tightly conserved subfamily of the larger family of sugar (and other) transporters described by pfam model pfam00083. Members of this subfamily include closely related forms SV2A and SV2B of synaptic vesicle protein from vertebrates and a more distantly related homolog (below trusted cutoff) from Drosophila melanogaster. Members are predicted to have two sets of six transmembrane helices.

>PRK03633 putative MFS family transporter protein; Provisional

Probab=99.46  E-value=6.7e-12  Score=122.49  Aligned_cols=173  Identities=14%  Similarity=0.144  Sum_probs=124.5

Q ss_pred             CHHHHhhhhhHHHHHHHHHHhhhhHHHHHhcHHHHHHHhCCChhHH--HHHHHHHHHhhhhhhhhhhhhhhhhhccCchh
Q 017754          128 TLPQALMKADFLLLFFSLVLASGSGLTVIDNLGQICQSLGYADTSI--YVSMISIWNFLGRVGGGYFSEAIVRKFAYPRP  205 (366)
Q Consensus       128 ~~~~~l~~~~~~ll~~~~~~~~~~~~~~~~~l~~i~~~~g~s~~~~--~vsl~~i~~~~g~~~~G~lsD~~grr~~~~R~  205 (366)
                      +.++.++++.+|......+...........++|.+.++.|++....  ..++..++..++++..|+++||+++|+..   
T Consensus       192 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lp~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~~~~~~l---  268 (381)
T PRK03633        192 SIWPMLKLRQARLGVNGCIISGIVLGSLYGLMPLYLNHQGMSDASIGFWMALLVSAGILGQWPIGRLADRFGRLLVL---  268 (381)
T ss_pred             CHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHhhhHHHHHHcCcHHHH---
Confidence            4667788888886554433333333344567888888888886654  77788889999999999999999987544   


Q ss_pred             HHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHhhhhhhHHHHHHHhhCCCchhhHHHHHHhhhhhhHHhhhhHHHH
Q 017754          206 VAMAVAQVVMAFALLYYAIGWPGEIYVTTVLVGLSYGAHWAIVPAAASELFGLKSFGALYNFLTLASPAGSLIFSGVIAS  285 (366)
Q Consensus       206 ~~~~~~~~~~~~~~~l~~~~~~~~l~~~~~l~G~~~g~~~~~~~~~~se~f~~~~~g~~~g~~~~~~~~G~~i~gp~l~G  285 (366)
                         ..+..+++++.+.+. . ....+...++.|++.+...+...+.+.|..++++++...+..++...+|..+ ||.++|
T Consensus       269 ---~~~~~~~~~~~~~~~-~-~~~~~~~~~l~g~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~lG~~i-gp~~~G  342 (381)
T PRK03633        269 ---RVQVFVVILGSIAML-S-QAAMAPALFILGAAGFTLYPVAMAWACEKVEHHELVAMNQALLLSYTVGSLL-GPSFTA  342 (381)
T ss_pred             ---HHHHHHHHHHHHHHh-h-hHHHHHHHHHHHHHHHhHHHHHHHHHHccCCHHHHHHHHHHHHHHHHHHHHH-HHHHHH
Confidence               444444444443332 1 2223345566677666667777777889888888888888888889999996 999999


Q ss_pred             HHHhhhhhhhhhhhhhccCCCCCcccCCCCCCcccCCcchHHHHHHHHHHHHHHHH
Q 017754          286 GIYDYYAEKQAGLLWKYNGNMLPVSFRDQETPTCLGSICYSITCGIMAGLCIIAMV  341 (366)
Q Consensus       286 ~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~g~~~~~~~f~i~~~~~~~~~~  341 (366)
                      ++.|..+                                |++.|.+.+++.+++.+
T Consensus       343 ~l~~~~g--------------------------------~~~~f~~~~~~~l~~~~  366 (381)
T PRK03633        343 MLMQNYS--------------------------------DNLLFIMIASVSFIYLL  366 (381)
T ss_pred             HHHHHhC--------------------------------ccHHHHHHHHHHHHHHH
Confidence            9999887                                88899887776655443

>TIGR00894 2A0114euk Na(+)-dependent inorganic phosphate cotransporter

Probab=99.46  E-value=3.4e-12  Score=127.81  Aligned_cols=191  Identities=14%  Similarity=0.085  Sum_probs=131.3

Q ss_pred             CCHHHHhhhhhHHHHHHHHHHhhhhHHHHHhcHHHHHHH-hCCChhHH--HHHHHHHHHhhhhhhhhhhhhhhhhhccCc
Q 017754          127 FTLPQALMKADFLLLFFSLVLASGSGLTVIDNLGQICQS-LGYADTSI--YVSMISIWNFLGRVGGGYFSEAIVRKFAYP  203 (366)
Q Consensus       127 ~~~~~~l~~~~~~ll~~~~~~~~~~~~~~~~~l~~i~~~-~g~s~~~~--~vsl~~i~~~~g~~~~G~lsD~~grr~~~~  203 (366)
                      .++++.++++.+|.+.+..++.......+..++|.+.++ +|++....  ..+++.++..++.++.|+++||+++|+...
T Consensus       252 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lp~~l~~~~g~s~~~~g~~~~~~~~~~~i~~~~~g~l~d~~~~~~~~~  331 (465)
T TIGR00894       252 LPIKAIPKSLPVWAIWFAIFGHFWLYTILPTYLPTFISWVLRVSGKENGLLSSLPYLFAWLCSIFAGYLADFLKSSKTLS  331 (465)
T ss_pred             CCHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcChHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCc
Confidence            358889999999999988888888778888899998755 78877655  677888999999999999999998776554


Q ss_pred             hhHH----HHHHHHHHHHHHHHHHh-h-hhHHHHHHHHHHHHHHhhhhhhHHHHHHHhhCCCchhhHHHHHHhhhhhhHH
Q 017754          204 RPVA----MAVAQVVMAFALLYYAI-G-WPGEIYVTTVLVGLSYGAHWAIVPAAASELFGLKSFGALYNFLTLASPAGSL  277 (366)
Q Consensus       204 R~~~----~~~~~~~~~~~~~l~~~-~-~~~~l~~~~~l~G~~~g~~~~~~~~~~se~f~~~~~g~~~g~~~~~~~~G~~  277 (366)
                      |...    ..++.++.++..+.... . +....+++..+.+.+.+...+.......|.. ++..|...++.++...+|+.
T Consensus       332 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~-~~~~g~~~g~~~~~~~l~~~  410 (465)
T TIGR00894       332 LTAARKIFNGIGGLGPGIFAYALPYLSAAFYLTIIILTLANAVSSGPLAGVLINSLDLA-PRFLGFIKGITGLPGFIGGL  410 (465)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHcCCchHHHHHHHHHHHHHhhhhhhhhhhchhhcC-hhHHHHHHHHHHHHHHHHHH
Confidence            4322    12222111211111111 1 2222233334444444444444444555655 45899999999999999999


Q ss_pred             hhhhHHHHHHHhhhhhhhhhhhhhccCCCCCcccCCCCCCcccCCcchHHHHHHHHHHHHHHHHHHHHHhh
Q 017754          278 IFSGVIASGIYDYYAEKQAGLLWKYNGNMLPVSFRDQETPTCLGSICYSITCGIMAGLCIIAMVMSLIVVH  348 (366)
Q Consensus       278 i~gp~l~G~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~g~~~~~~~f~i~~~~~~~~~~~~~~~~~  348 (366)
                      + +|.+.|++.|....  +                           .|..+|++.+++++++.++...+..
T Consensus       411 i-~p~l~g~~~~~~~~--~---------------------------~~~~~f~~~~~~~~i~~i~~~~~~~  451 (465)
T TIGR00894       411 I-ASTLAGNILSQDSK--N---------------------------VWLIVFLIMAFVNILCVIFYLIFGS  451 (465)
T ss_pred             H-HHHhhheeeCCCCc--h---------------------------HHHHHHHHHHHHHHHHHHHeeeeec
Confidence            6 89999998875421  0                           2999999999888888776655443

>TIGR00712 glpT glycerol-3-phosphate transporter

Probab=99.46  E-value=3.3e-12  Score=127.17  Aligned_cols=176  Identities=14%  Similarity=0.134  Sum_probs=127.9

Q ss_pred             hhhHHHHHHHHHHhhhhHHHHHhcHHHHHHHhCCChhHH--HHHHHHHHHhhhhhhhhhhhhhhhhhccCchhHHHHHHH
Q 017754          135 KADFLLLFFSLVLASGSGLTVIDNLGQICQSLGYADTSI--YVSMISIWNFLGRVGGGYFSEAIVRKFAYPRPVAMAVAQ  212 (366)
Q Consensus       135 ~~~~~ll~~~~~~~~~~~~~~~~~l~~i~~~~g~s~~~~--~vsl~~i~~~~g~~~~G~lsD~~grr~~~~R~~~~~~~~  212 (366)
                      +..+|.+.+.+.+.......+...+|.+. +.|++..+.  ..+...++..++.+..|+++||++||+..      ..+.
T Consensus        26 ~~~~~~~~~~~~~~~~~~~~~~~~~p~~~-~~g~s~~~~g~~~~~~~~~~~~~~~~~G~l~dr~g~~~~~------~~~~   98 (438)
T TIGR00712        26 WQVFLGIFFGYAAYYLVRKNFALAMPYLV-EQGFSKGELGFALSAISIAYGFSKFIMGSVSDRSNPRVFL------PAGL   98 (438)
T ss_pred             HHHHHHHHHHHHHHHHHhccHHhhhHHHH-HcCCCHhHhHHHHHHHHHHHHHhhhccchhhhccCCceeh------HHHH
Confidence            34445555544444444344455667655 468887765  77888899999999999999999998765      5555


Q ss_pred             HHHHHHHHHHHh-----hhhHHHHHHHHHHHHHHhhhhhhHHHHHHHhhCCCchhhHHHHHHhhhhhhHHhhhhHHHHHH
Q 017754          213 VVMAFALLYYAI-----GWPGEIYVTTVLVGLSYGAHWAIVPAAASELFGLKSFGALYNFLTLASPAGSLIFSGVIASGI  287 (366)
Q Consensus       213 ~~~~~~~~l~~~-----~~~~~l~~~~~l~G~~~g~~~~~~~~~~se~f~~~~~g~~~g~~~~~~~~G~~i~gp~l~G~l  287 (366)
                      ++.+++.++...     .+...+++..++.|++.|..++.....+.|.+++++||++.++.+.+..+|+.+ +|.+.+.+
T Consensus        99 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~~~g~~~~~~~~~i~~~~~~~~rg~~~~~~~~~~~~g~~~-~~~l~~~~  177 (438)
T TIGR00712        99 ILSAAVMLLMGFVPWATSSIAIMFVLLFLNGWFQGMGWPPCGRTMVHWWSQSERGTIVSIWNCAHNIGGGI-PPLLVLLG  177 (438)
T ss_pred             HHHHHHHHHHhccccccchHHHHHHHHHHHHHHhhcchHHHHHHHHHhcCcccchhHHHHHHHHHHhHhHH-HHHHHHHH
Confidence            666665555432     123345667778899888888888888999999999999999999999999996 78877765


Q ss_pred             HhhhhhhhhhhhhhccCCCCCcccCCCCCCcccCCcchHHHHHHHHHHHHHHHHHHHHHhhh
Q 017754          288 YDYYAEKQAGLLWKYNGNMLPVSFRDQETPTCLGSICYSITCGIMAGLCIIAMVMSLIVVHR  349 (366)
Q Consensus       288 ~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~g~~~~~~~f~i~~~~~~~~~~~~~~~~~~  349 (366)
                      .+...                               .|+.+|++.++++++..++.+++.++
T Consensus       178 ~~~~~-------------------------------~w~~~f~~~~~~~~i~~~~~~~~~~~  208 (438)
T TIGR00712       178 MAWFN-------------------------------DWHAALYFPAICAIIVALFAFAMMRD  208 (438)
T ss_pred             HHHhh-------------------------------hhHHHHHHHHHHHHHHHHHHHHhccC
Confidence            55432                               29999999998888776666555443

This model describes a very hydrophobic protein, predicted to span the membrane at least 8 times. The two members confirmed experimentally as glycerol-3-phosphate transporters, from E. coli and B. subtilis, share more than 50 % amino acid identity. Proteins of the hexose phosphate and phosphoglycerate transport systems are also quite similar.

>PRK11195 lysophospholipid transporter LplT; Provisional

Probab=99.46  E-value=3.8e-12  Score=125.08  Aligned_cols=147  Identities=14%  Similarity=0.101  Sum_probs=117.0

Q ss_pred             hhhHHHHHHHHHHhhhhHHHHHhcHHHHHHHhCCChhHH--HHHHHHHHHhhhhhhhhhhhhhhhhhccCchhHHHHHHH
Q 017754          135 KADFLLLFFSLVLASGSGLTVIDNLGQICQSLGYADTSI--YVSMISIWNFLGRVGGGYFSEAIVRKFAYPRPVAMAVAQ  212 (366)
Q Consensus       135 ~~~~~ll~~~~~~~~~~~~~~~~~l~~i~~~~g~s~~~~--~vsl~~i~~~~g~~~~G~lsD~~grr~~~~R~~~~~~~~  212 (366)
                      +++||.++++.++.......+...++.+.++++.+....  ..+.+.+...++.+++|+++||++||+.+      ..+.
T Consensus         2 ~~~f~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~l~~~l~~~~~G~laDr~grr~vl------~~~~   75 (393)
T PRK11195          2 SKGFYAIMAAQFFSALADNALLFAAIALLKELHYPDWSQPLLQMFFVLAYIVLAPFVGAFADSFPKGRVM------FIAN   75 (393)
T ss_pred             CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHHHHhhhhHhhhccCCchhh------HHHH
Confidence            356888888887776655555566677788888876554  77788889999999999999999999877      5555


Q ss_pred             HHHHHHHHHHHhhhhHHHHHHHHHHHHHHhhhhhhHHHHHHHhhCCCchhhHHHHHHhhhhhhHHhhhhHHHHHHHhh
Q 017754          213 VVMAFALLYYAIGWPGEIYVTTVLVGLSYGAHWAIVPAAASELFGLKSFGALYNFLTLASPAGSLIFSGVIASGIYDY  290 (366)
Q Consensus       213 ~~~~~~~~l~~~~~~~~l~~~~~l~G~~~g~~~~~~~~~~se~f~~~~~g~~~g~~~~~~~~G~~i~gp~l~G~l~d~  290 (366)
                      ++.+++.+++.....  .++.+++.|++.+...+...++++|++|+++++++.++..+...+|..+ ||.++|.+.+.
T Consensus        76 ~~~~~~~~~~~~~~~--~~~~r~l~G~~~a~~~pa~~a~i~~~~~~~~~~~a~~~~~~~~~~~~~~-Gp~lgG~l~~~  150 (393)
T PRK11195         76 GIKLLGCLLMLFGIH--PLLAYGLVGIGAAAYSPAKYGILTELLPGEKLVKANGWMEGSTIAAILL-GTVLGGALADP  150 (393)
T ss_pred             HHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHH
Confidence            555555444332211  2667788999999999999999999999999999999999999999996 99999999884

>TIGR00712 glpT glycerol-3-phosphate transporter

Probab=99.45  E-value=3.1e-12  Score=127.32  Aligned_cols=186  Identities=16%  Similarity=0.152  Sum_probs=126.3

Q ss_pred             HHhhhhhHHHHHHHHHHhhhhHHHHHhcHHHHHHH-hCCChhHH--HHHHHHHHHhhhhhhhhhhhhhhhhhccCchhHH
Q 017754          131 QALMKADFLLLFFSLVLASGSGLTVIDNLGQICQS-LGYADTSI--YVSMISIWNFLGRVGGGYFSEAIVRKFAYPRPVA  207 (366)
Q Consensus       131 ~~l~~~~~~ll~~~~~~~~~~~~~~~~~l~~i~~~-~g~s~~~~--~vsl~~i~~~~g~~~~G~lsD~~grr~~~~R~~~  207 (366)
                      ..++++.+|.+.+..++.....+.+..++|.+.++ .|++...+  ..+++.+.+.++++++|+++||+++++..   ..
T Consensus       246 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~l~~~~g~s~~~~~~~~~~~~~~~~ig~~~~g~l~dr~~~~~~~---~~  322 (438)
T TIGR00712       246 YVLPNKLLWYIAIANVFVYLLRYGVLDWSPTYLKEVKHFALDKSSWAYFLYEYAGIPGTLLCGWMSDKVFKGNRG---AT  322 (438)
T ss_pred             HHccCchHHHHHHHHHHHHHHHHHHHHhHHHHHHHccCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHhccCccc---HH
Confidence            36688889988777666666666777899999876 58877654  66778888999999999999999765432   11


Q ss_pred             HHHHHHHHHHHHHHHHh---hhhHHHHHHHHHHHHHHhhhhhhHHHHHHHhhCCCchhhHHHHHHhhhhhhHHhhhhHHH
Q 017754          208 MAVAQVVMAFALLYYAI---GWPGEIYVTTVLVGLSYGAHWAIVPAAASELFGLKSFGALYNFLTLASPAGSLIFSGVIA  284 (366)
Q Consensus       208 ~~~~~~~~~~~~~l~~~---~~~~~l~~~~~l~G~~~g~~~~~~~~~~se~f~~~~~g~~~g~~~~~~~~G~~i~gp~l~  284 (366)
                      .........++.+.+..   .+....++..++.|++..+........+.|.+|++.+|++.|+.+....+|+.+++|.+.
T Consensus       323 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~gg~~~gp~l~  402 (438)
T TIGR00712       323 GVFFMTLVTIAVIVYWMNPAGNPLVDMICMIVIGFLIYGPVMLIGLHALELAPKKAAGTAAGFTGLFGYLGGSVAASAIV  402 (438)
T ss_pred             HHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHccHHHHHHHHHHHhcChhheeeehhhhchHHHhhhhhhcchhH
Confidence            11111111122222211   122323333444555433333333346789999999999999999888887643499999


Q ss_pred             HHHHhhhhhhhhhhhhhccCCCCCcccCCCCCCcccCCcchHHHHHHHHHHHHHHHHHHHHHhhhch
Q 017754          285 SGIYDYYAEKQAGLLWKYNGNMLPVSFRDQETPTCLGSICYSITCGIMAGLCIIAMVMSLIVVHRTK  351 (366)
Q Consensus       285 G~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~g~~~~~~~f~i~~~~~~~~~~~~~~~~~~~r  351 (366)
                      |.+.|..+                                |..+|++++++++++.+..+++.++.|
T Consensus       403 G~l~~~~g--------------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~  437 (438)
T TIGR00712       403 GYTVDFFG--------------------------------WDGGFMVMIGGSILAVILLIVVMIGEK  437 (438)
T ss_pred             HHHHHhcc--------------------------------chHHHHHHHHHHHHHHHHHHHHHhhcc
Confidence            99999876                                999999988888888877777665543

This model describes a very hydrophobic protein, predicted to span the membrane at least 8 times. The two members confirmed experimentally as glycerol-3-phosphate transporters, from E. coli and B. subtilis, share more than 50 % amino acid identity. Proteins of the hexose phosphate and phosphoglycerate transport systems are also quite similar.

>PRK11646 multidrug resistance protein MdtH; Provisional

Probab=99.45  E-value=6.1e-12  Score=123.90  Aligned_cols=169  Identities=17%  Similarity=0.224  Sum_probs=129.7

Q ss_pred             HHHHHHHHHhhhhHHHHHhcHHHH-HHHhCCChhHH--HHHHHHHHHhhhhhhhhhhhhhhhhhccCchhHHHHHHHHHH
Q 017754          139 LLLFFSLVLASGSGLTVIDNLGQI-CQSLGYADTSI--YVSMISIWNFLGRVGGGYFSEAIVRKFAYPRPVAMAVAQVVM  215 (366)
Q Consensus       139 ~ll~~~~~~~~~~~~~~~~~l~~i-~~~~g~s~~~~--~vsl~~i~~~~g~~~~G~lsD~~grr~~~~R~~~~~~~~~~~  215 (366)
                      +++++..++.......+...++.+ .+++|++....  ..+...+...+.++++|+++||++||+..      ..+.++.
T Consensus        13 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~gl~~~~~~l~~~~~~~~~G~l~dr~g~k~~l------~~~~~~~   86 (400)
T PRK11646         13 YFLLIDNMLVVLGFFVVFPLISIRFVDQLGWAAVMVGIALGLRQFIQQGLGIFGGAIADRFGAKPMI------VTGMLMR   86 (400)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHHHhhhhHHHHHhCchHHH------HHHHHHH
Confidence            444455555555555555566654 46789987766  67777888888899999999999987765      6666666


Q ss_pred             HHHHHHHHh-hhhHHHHHHHHHHHHHHhhhhhhHHHHHHHhhCCCchhhHHHHHHhhhhhhHHhhhhHHHHHHHhhhhhh
Q 017754          216 AFALLYYAI-GWPGEIYVTTVLVGLSYGAHWAIVPAAASELFGLKSFGALYNFLTLASPAGSLIFSGVIASGIYDYYAEK  294 (366)
Q Consensus       216 ~~~~~l~~~-~~~~~l~~~~~l~G~~~g~~~~~~~~~~se~f~~~~~g~~~g~~~~~~~~G~~i~gp~l~G~l~d~~~~~  294 (366)
                      +++.+++.. .+.+.+++..++.|++.+...+...+++.+.+++++++.++++......+|..+ ||.++|++. ..+  
T Consensus        87 ~~~~~~~~~~~~~~~l~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~g~~i-g~~l~g~l~-~~g--  162 (400)
T PRK11646         87 AAGFATMAIAHEPWLLWLSCILSGLGGTLFDPPRTALVIKLIRPHQRGRFFSLLMMQDSAGAVI-GALLGSWLL-QYD--  162 (400)
T ss_pred             HHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHH-Hhh--
Confidence            666666553 445567788888899888777778889999999999999999999999999996 999999998 445  


Q ss_pred             hhhhhhhccCCCCCcccCCCCCCcccCCcchHHHHHHHHHHHHHHHHHHHHHh
Q 017754          295 QAGLLWKYNGNMLPVSFRDQETPTCLGSICYSITCGIMAGLCIIAMVMSLIVV  347 (366)
Q Consensus       295 ~~~~~~~~~~~~~~~~~~~~~~~~c~g~~~~~~~f~i~~~~~~~~~~~~~~~~  347 (366)
                                                    |++.|++.++++++++++..+..
T Consensus       163 ------------------------------~~~~f~~~~~~~~~~~i~~~~~~  185 (400)
T PRK11646        163 ------------------------------FRLVCATGAVLFVLAAAFNAWLL  185 (400)
T ss_pred             ------------------------------HHHHHHHHHHHHHHHHHHHHHhC
Confidence                                          99999988877776655544433

>TIGR00892 2A0113 monocarboxylate transporter 1

Probab=99.45  E-value=3.4e-12  Score=127.88  Aligned_cols=153  Identities=10%  Similarity=0.108  Sum_probs=118.3

Q ss_pred             HHHhcHHHHHHHhCCChhHH--HHHHHHHHHhhhhhhhhhhhhhhhhhccCchhHHHHHHHHHHHHHHHHHHh-hhhHHH
Q 017754          154 TVIDNLGQICQSLGYADTSI--YVSMISIWNFLGRVGGGYFSEAIVRKFAYPRPVAMAVAQVVMAFALLYYAI-GWPGEI  230 (366)
Q Consensus       154 ~~~~~l~~i~~~~g~s~~~~--~vsl~~i~~~~g~~~~G~lsD~~grr~~~~R~~~~~~~~~~~~~~~~l~~~-~~~~~l  230 (366)
                      .+...+|++.+++|.+..+.  ..+++.++..++.+++|+++||++||+.+      ..+.++.+++.++++. .+...+
T Consensus        37 ~~~~~~~~i~~~~g~s~~~~~~~~s~~~~~~~~~~~~~G~l~dr~g~r~~l------~~~~~~~~~~~~~~~~~~~~~~l  110 (455)
T TIGR00892        37 AVTVFFKELQQIFQATYSETAWISSIMLAVLYAGGPISSILVNRFGCRPVV------IAGGLLASLGMILASFSSNVIEL  110 (455)
T ss_pred             chhhhHHHHHHHhCcchhHHHHHHHHHHHHHHHhhHHHHHHHHHcCchHHH------HhhHHHHHHHHHHHHHhhhHHHH
Confidence            34556888999999987665  67777778888999999999999998655      5566666666666543 334444


Q ss_pred             HHH-HHHHHHHHhhhhhhHHHHHHHhhCCCchhhHHHHHHhhhhhhHHhhhhHHHHHHHhhhhhhhhhhhhhccCCCCCc
Q 017754          231 YVT-TVLVGLSYGAHWAIVPAAASELFGLKSFGALYNFLTLASPAGSLIFSGVIASGIYDYYAEKQAGLLWKYNGNMLPV  309 (366)
Q Consensus       231 ~~~-~~l~G~~~g~~~~~~~~~~se~f~~~~~g~~~g~~~~~~~~G~~i~gp~l~G~l~d~~~~~~~~~~~~~~~~~~~~  309 (366)
                      ++. +++.|++.+..++...+++.+.|+ ++|+.+.++.+.+..+|..+ +|++.|++.+..+                 
T Consensus       111 ~~~~~~l~G~~~~~~~~~~~~~~~~~~~-~~r~~a~g~~~~~~~~g~~~-~~~l~~~l~~~~g-----------------  171 (455)
T TIGR00892       111 YLTAGFITGLGLAFNFQPSLTMLGKYFY-RRRPLANGLAMAGSPVFLST-LAPLNQYLFESFG-----------------  171 (455)
T ss_pred             HHHHHHHHHhcchhhhhHHHHHHHHHHH-hhHHHHHHHHHhcccHHHHH-HHHHHHHHHHHhC-----------------
Confidence            443 467788887766666778889995 78999999999999999996 8999999998876                 


Q ss_pred             ccCCCCCCcccCCcchHHHHHHHHHHHHHHHHHHHHH
Q 017754          310 SFRDQETPTCLGSICYSITCGIMAGLCIIAMVMSLIV  346 (366)
Q Consensus       310 ~~~~~~~~~c~g~~~~~~~f~i~~~~~~~~~~~~~~~  346 (366)
                                     |+++|++.+++++++.+..+++
T Consensus       172 ---------------wr~~f~~~~~~~~~~~v~~~~~  193 (455)
T TIGR00892       172 ---------------WRGSFLILGGLLLHCCVCGALM  193 (455)
T ss_pred             ---------------hHHHHHHHHHHHHHHHHHHHHh
Confidence                           9999999998877666554443

>TIGR00879 SP MFS transporter, sugar porter (SP) family

Probab=99.45  E-value=1.1e-12  Score=129.83  Aligned_cols=177  Identities=13%  Similarity=0.078  Sum_probs=122.6

Q ss_pred             hhHHHHHHHHHHhhhhHHHHHhcHHHHHHHhCCChhHH--HHHHHHHHHhhhhhhhhhhhhhhhhhccCchhHHHHHHHH
Q 017754          136 ADFLLLFFSLVLASGSGLTVIDNLGQICQSLGYADTSI--YVSMISIWNFLGRVGGGYFSEAIVRKFAYPRPVAMAVAQV  213 (366)
Q Consensus       136 ~~~~ll~~~~~~~~~~~~~~~~~l~~i~~~~g~s~~~~--~vsl~~i~~~~g~~~~G~lsD~~grr~~~~R~~~~~~~~~  213 (366)
                      +.+|..++.++...........+.|.+.++.|++....  ...+..++.+++++++|+++||++||+..      ..+.+
T Consensus       284 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~------~~~~~  357 (481)
T TIGR00879       284 RLFLGVVLQWFQQFTGINAIMYYSPTIFENAGVSTDHAFLVSIIVGAVNFAFTFVAIFLVDRFGRRPLL------LIGAA  357 (481)
T ss_pred             HHHHHHHHHHHHHHhCCeehHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHH------HHHHH
Confidence            33444444444433333445667888888899887544  66777888999999999999999987654      44455


Q ss_pred             HHHHHHHHHH---h--hh------hHHHHHHHHHHHHHHhh-hhhhHHHHHHHhhCCCchhhHHHHHHhhhhhhHHhhhh
Q 017754          214 VMAFALLYYA---I--GW------PGEIYVTTVLVGLSYGA-HWAIVPAAASELFGLKSFGALYNFLTLASPAGSLIFSG  281 (366)
Q Consensus       214 ~~~~~~~l~~---~--~~------~~~l~~~~~l~G~~~g~-~~~~~~~~~se~f~~~~~g~~~g~~~~~~~~G~~i~gp  281 (366)
                      +++++.+++.   .  ..      .........+++.+++. ..+.....++|.+|++.++++.++.++...+|+.+ +|
T Consensus       358 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~lg~~i-~~  436 (481)
T TIGR00879       358 GMAICLFVLGILGASFVTGSSKSSGNVAIVFILLFIAFFAMGWGPVPWVIVSEIFPLSLRPKGISIAVAANWLANFI-VG  436 (481)
T ss_pred             HHHHHHHHHHHHhhcccCCcccchhHHHHHHHHHHHHHHHccccCeehhhhhccCChHHHHHHHHHHHHHHHHHHHH-HH
Confidence            5555544433   1  11      22222233333333332 23555667799999999999999999999999996 89


Q ss_pred             HHHHHHHhhhhhhhhhhhhhccCCCCCcccCCCCCCcccCCcchHHHHHHHHHHHHHHHHHHHHHhhhch
Q 017754          282 VIASGIYDYYAEKQAGLLWKYNGNMLPVSFRDQETPTCLGSICYSITCGIMAGLCIIAMVMSLIVVHRTK  351 (366)
Q Consensus       282 ~l~G~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~g~~~~~~~f~i~~~~~~~~~~~~~~~~~~~r  351 (366)
                      .+.|.+.+..+                                |++.|++.++++++++++.+++.++++
T Consensus       437 ~~~~~~~~~~~--------------------------------~~~~f~~~~~~~~~~~i~~~~~~~~~~  474 (481)
T TIGR00879       437 FLFPTMLESIG--------------------------------VGGVFIFFGGLNVLGLIFVYFFLPETK  474 (481)
T ss_pred             HHHHHHHHhcC--------------------------------ccceehhHHHHHHHHHHHHheecccCC
Confidence            99999998876                                888999999888888877766655544

This model represent the sugar porter subfamily of the major facilitator superfamily (pfam00083)

>PRK03893 putative sialic acid transporter; Provisional

Probab=99.45  E-value=6.4e-12  Score=126.57  Aligned_cols=149  Identities=12%  Similarity=0.180  Sum_probs=121.3

Q ss_pred             hHHHHHHHHHHhhhhHHHHHhcHHHHHHHhCCChhHH--HHHHHHHHHhhhhhhhhhhhhhhhhhccCchhHHHHHHHHH
Q 017754          137 DFLLLFFSLVLASGSGLTVIDNLGQICQSLGYADTSI--YVSMISIWNFLGRVGGGYFSEAIVRKFAYPRPVAMAVAQVV  214 (366)
Q Consensus       137 ~~~ll~~~~~~~~~~~~~~~~~l~~i~~~~g~s~~~~--~vsl~~i~~~~g~~~~G~lsD~~grr~~~~R~~~~~~~~~~  214 (366)
                      .+..+++++++...........+|.+.+++|.+..+.  ..+...++..++.++.|+++||+|||+..      ..+.++
T Consensus        21 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~------~~~~~~   94 (496)
T PRK03893         21 AFSAAWLGYLLDGFDFVLITLVLTEVQGEFGLTTVQAASLISAAFISRWFGGLLLGAMGDRYGRRLAM------VISIVL   94 (496)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcHHHH------HHHHHH
Confidence            4455566666655666666677889999999987765  78888899999999999999999997755      566666


Q ss_pred             HHHHHHHHHh-hhhHHHHHHHHHHHHHHhhhhhhHHHHHHHhhCCCchhhHHHHHHhhhhhhHHhhhhHHHHHHHhhhh
Q 017754          215 MAFALLYYAI-GWPGEIYVTTVLVGLSYGAHWAIVPAAASELFGLKSFGALYNFLTLASPAGSLIFSGVIASGIYDYYA  292 (366)
Q Consensus       215 ~~~~~~l~~~-~~~~~l~~~~~l~G~~~g~~~~~~~~~~se~f~~~~~g~~~g~~~~~~~~G~~i~gp~l~G~l~d~~~  292 (366)
                      .+++.++... .+...+++..++.|++.+..++....++.|.++.++++...++...+..+|..+ +|.+.+.+.+..+
T Consensus        95 ~~~~~~~~~~~~~~~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~-~~~~~~~l~~~~~  172 (496)
T PRK03893         95 FSVGTLACGFAPGYWTLFIARLVIGMGMAGEYGSSATYVIESWPKHLRNKASGFLISGFSIGAVV-AAQVYSLVVPVWG  172 (496)
T ss_pred             HHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHhccCC
Confidence            6666666553 455677888899999999888888999999999999999999999999999996 9999999988665

>TIGR00886 2A0108 nitrite extrusion protein (nitrite facilitator)

Probab=99.45  E-value=4e-12  Score=122.50  Aligned_cols=146  Identities=14%  Similarity=0.192  Sum_probs=115.7

Q ss_pred             hHHHHHHHHHHhhhhHHHHHhcHHH-HHHHhCCChhHH--HHHHHHHHHhhhhhhhhhhhhhhhhhccCchhHHHHHHHH
Q 017754          137 DFLLLFFSLVLASGSGLTVIDNLGQ-ICQSLGYADTSI--YVSMISIWNFLGRVGGGYFSEAIVRKFAYPRPVAMAVAQV  213 (366)
Q Consensus       137 ~~~ll~~~~~~~~~~~~~~~~~l~~-i~~~~g~s~~~~--~vsl~~i~~~~g~~~~G~lsD~~grr~~~~R~~~~~~~~~  213 (366)
                      .+|..++++++.......+...+|+ +.+++|++....  ..+...++..++.+++|+++||+|||+..      .++.+
T Consensus         2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~------~~~~~   75 (366)
T TIGR00886         2 NLFFSWFGFFLSFSVWFAFSPLAVQMIKDDLGLSTAQLGNLVAVPVLAGAVLRIILGFLVDKFGPRYTT------TLSLL   75 (366)
T ss_pred             chHHHHHHHHHHHHHHHHhHHhhhHHHHHHhCCCHHHhhHhhHHHHHHHHHHHHHHHHHHHHhCchHHH------HHHHH
Confidence            4677888888877777888888996 778899998775  78888999999999999999999998765      66667


Q ss_pred             HHHHHHHHHHh-h-hhHHHHHHHHHHHHHHhhhhhhHHHHHHHhhCCCchhhHHHHHHhhhhhhHHhhhhHHHHHHHhh
Q 017754          214 VMAFALLYYAI-G-WPGEIYVTTVLVGLSYGAHWAIVPAAASELFGLKSFGALYNFLTLASPAGSLIFSGVIASGIYDY  290 (366)
Q Consensus       214 ~~~~~~~l~~~-~-~~~~l~~~~~l~G~~~g~~~~~~~~~~se~f~~~~~g~~~g~~~~~~~~G~~i~gp~l~G~l~d~  290 (366)
                      +++++.+++.. . +...+++.+++.|++.+ .+....++++|.+++++|+.+.++......+|..+ ++.+++.+...
T Consensus        76 ~~~i~~~~~~~~~~~~~~~~~~~~~~g~~~~-~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~-~~~i~~~l~~~  152 (366)
T TIGR00886        76 LLAIPCLWAGLAVQSYSVLLLLRLFIGIAGG-SFASCMPWISFFFPKKIQGTALGLAAGWGNMGGGV-AQFVMPPIIGS  152 (366)
T ss_pred             HHHHHHHHHHHHhhhHHHHHHHHHHHHHhch-hhHhHHHHHHHhcCHhhhhHHHHHHHHHhHHHHHH-HHHHHHHHHHH
Confidence            77777666553 3 45567788888998855 45566778999999999999999988777777775 77776666553

>PLN00028 nitrate transmembrane transporter; Provisional

Probab=99.45  E-value=2.1e-12  Score=130.15  Aligned_cols=184  Identities=14%  Similarity=0.194  Sum_probs=123.4

Q ss_pred             HHHHhhhhhHHHHHHHHHHhhhhHHHHHhcHHHHHH-HhCCChhHH--HHHHHHHHHhhhhhhhhhhhhhhhhhccCc-h
Q 017754          129 LPQALMKADFLLLFFSLVLASGSGLTVIDNLGQICQ-SLGYADTSI--YVSMISIWNFLGRVGGGYFSEAIVRKFAYP-R  204 (366)
Q Consensus       129 ~~~~l~~~~~~ll~~~~~~~~~~~~~~~~~l~~i~~-~~g~s~~~~--~vsl~~i~~~~g~~~~G~lsD~~grr~~~~-R  204 (366)
                      +++.++++++|++++.+++.......+.+++|.+.. ++|++...+  +.+++.+++.+|++++|+++||++||+..+ |
T Consensus       245 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~l~~~~g~s~~~a~~~~~~~~~~~~ig~~~~G~lsDr~~~r~~~~~r  324 (476)
T PLN00028        245 LRYGVTNYRTWILALTYGYSFGVELTMDNIIAEYFYDRFGLSLETAGAIAASFGLMNLFARPAGGYLSDVAARRFGMRGR  324 (476)
T ss_pred             HHHHHcCchhHHHHHHHHHHHHHHHHHHhHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHhcCcchh
Confidence            456778888998887777666666667778888865 469987655  788889999999999999999999876432 4


Q ss_pred             hHHHHHHHHHHHHHHHHHHhh-hhHHHHHHHHHHHHHHhhhhhhHHHHHHHhhCCCchhhHHHHHHhhhhhhHHhhhhHH
Q 017754          205 PVAMAVAQVVMAFALLYYAIG-WPGEIYVTTVLVGLSYGAHWAIVPAAASELFGLKSFGALYNFLTLASPAGSLIFSGVI  283 (366)
Q Consensus       205 ~~~~~~~~~~~~~~~~l~~~~-~~~~l~~~~~l~G~~~g~~~~~~~~~~se~f~~~~~g~~~g~~~~~~~~G~~i~gp~l  283 (366)
                      .....+.+++.+++.+++... +.....+..++.+++.+...+..+++++++ +++++|+.+|+.+....+|+.     +
T Consensus       325 ~~~~~~~~~l~~i~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~-~~~~~g~~~g~~~~~g~lg~~-----i  398 (476)
T PLN00028        325 LWALWIVQTLGGVFCIWLGRANSLGAAIVVMILFSIFVQAACGATFGIVPFV-SRRSLGVISGLTGAGGNVGAV-----L  398 (476)
T ss_pred             HHHHHHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHHHhhhhhcccCccc-ChhhchhhhhhhhccccHHHH-----H
Confidence            444445555544444443322 223334444555665555455555556665 457899999998776555555     4


Q ss_pred             HHHHHhhhhhhhhhhhhhccCCCCCcccCCCCCCcccCCcchHHHHHHHHHHHHHHHHHHHHHh
Q 017754          284 ASGIYDYYAEKQAGLLWKYNGNMLPVSFRDQETPTCLGSICYSITCGIMAGLCIIAMVMSLIVV  347 (366)
Q Consensus       284 ~G~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~g~~~~~~~f~i~~~~~~~~~~~~~~~~  347 (366)
                      ++++++.++.                             .+|+.+|++.+++.++++++.+++.
T Consensus       399 ~~~l~~~~~~-----------------------------~~y~~~f~~~~~~~~i~~~~~~~~~  433 (476)
T PLN00028        399 TQLLFFTGSS-----------------------------YSTETGISLMGVMIIACTLPVAFIH  433 (476)
T ss_pred             HHHHHHhcCC-----------------------------ccHhhHHHHHHHHHHHHHHHHHhee
Confidence            4455543220                             0399999999988888877776654

>PRK10642 proline/glycine betaine transporter; Provisional

Probab=99.45  E-value=1.1e-11  Score=125.24  Aligned_cols=158  Identities=11%  Similarity=0.064  Sum_probs=104.4

Q ss_pred             CHHHHhhh-hhHHHHH-HHHHHhhhhHHHHHhcHHHHHH-HhCCChhHH--HHHHHHHHHhhhhhhhhhhhhhhhhhccC
Q 017754          128 TLPQALMK-ADFLLLF-FSLVLASGSGLTVIDNLGQICQ-SLGYADTSI--YVSMISIWNFLGRVGGGYFSEAIVRKFAY  202 (366)
Q Consensus       128 ~~~~~l~~-~~~~ll~-~~~~~~~~~~~~~~~~l~~i~~-~~g~s~~~~--~vsl~~i~~~~g~~~~G~lsD~~grr~~~  202 (366)
                      ++++.+++ ++.+++. ...++.....+.+..++|.+.+ .+|++....  ..+...++..++.++.|+++||+|||+.+
T Consensus       240 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~l~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~grr~~~  319 (490)
T PRK10642        240 SFKEIATKHWRSLLTCIGLVIATNVTYYMLLTYMPSYLSHNLHYSEDHGVLIIIAIMIGMLFVQPVMGLLSDRFGRRPFV  319 (490)
T ss_pred             CHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHH
Confidence            46666653 2333322 2223334445567778999885 468876544  55666788889999999999999997644


Q ss_pred             chhHHHHHHHHH-HHHHH--HHHH-hhhhHHHHHHHHHHHHHHhhhhhhHHHHHHHhhCCCchhhHHHHHHhhhhhhHHh
Q 017754          203 PRPVAMAVAQVV-MAFAL--LYYA-IGWPGEIYVTTVLVGLSYGAHWAIVPAAASELFGLKSFGALYNFLTLASPAGSLI  278 (366)
Q Consensus       203 ~R~~~~~~~~~~-~~~~~--~l~~-~~~~~~l~~~~~l~G~~~g~~~~~~~~~~se~f~~~~~g~~~g~~~~~~~~G~~i  278 (366)
                            ..+.++ ...+.  +... ..+...++++.++.|++.+...+..+.+++|+||++.||++.|+.+....+++.+
T Consensus       320 ------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~g~~~~~~~~~~p~~~Rg~~~g~~~~~~~~~g~~  393 (490)
T PRK10642        320 ------ILGSVALFVLAIPAFILINSNVIGLIFAGLLMLAVILNCFTGVMASTLPAMFPTHIRYSALAAAFNISVLVAGL  393 (490)
T ss_pred             ------HHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCccchHHHHHHHHHHHHHHHH
Confidence                  222221 21111  1112 2223455666777788777777778888999999999999999865555666664


Q ss_pred             hhhHHHHHHHhhhh
Q 017754          279 FSGVIASGIYDYYA  292 (366)
Q Consensus       279 ~gp~l~G~l~d~~~  292 (366)
                       +|.+.|++.+..+
T Consensus       394 -~p~i~g~l~~~~~  406 (490)
T PRK10642        394 -TPTLAAWLVESTQ  406 (490)
T ss_pred             -HHHHHHHHHHHhC
Confidence             8999999988654

>PRK10207 dipeptide/tripeptide permease B; Provisional

Probab=99.45  E-value=3.3e-12  Score=129.17  Aligned_cols=149  Identities=18%  Similarity=0.264  Sum_probs=119.4

Q ss_pred             hHHHHHHHHHHhhhhHHHHHhcHHHHH-HHhCCChhHH--HHHHHHHHHhhhhhhhhhhhhh-hhhhccCchhHHHHHHH
Q 017754          137 DFLLLFFSLVLASGSGLTVIDNLGQIC-QSLGYADTSI--YVSMISIWNFLGRVGGGYFSEA-IVRKFAYPRPVAMAVAQ  212 (366)
Q Consensus       137 ~~~ll~~~~~~~~~~~~~~~~~l~~i~-~~~g~s~~~~--~vsl~~i~~~~g~~~~G~lsD~-~grr~~~~R~~~~~~~~  212 (366)
                      .+|++++..++...+.+.....++.+. +++|++..++  .++.+.....+..+++|+++|| +|||+.+      ..+.
T Consensus        15 ~~~~~~~~~~~er~~~y~~~~~l~~yl~~~lg~~~~~a~~i~~~~~~~~~~~~~~~G~laDr~~G~r~~~------~~g~   88 (489)
T PRK10207         15 PFFMIFFVELWERFGYYGVQGILAVFFVKQLGFSQEQAFITFGAFAALVYGLISIGGYVGDHLLGTKRTI------VLGA   88 (489)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHhhHHHhhhhccchHHHH------HHHH
Confidence            477777777777777777766677665 5689887665  6677777788888899999999 9998877      7788


Q ss_pred             HHHHHHHHHHHhh-h-hHHHHHHHHHHHHHHhhhhhhHHHHHHHhhCCC--chhhHHHHHHhhhhhhHHhhhhHHHHHHH
Q 017754          213 VVMAFALLYYAIG-W-PGEIYVTTVLVGLSYGAHWAIVPAAASELFGLK--SFGALYNFLTLASPAGSLIFSGVIASGIY  288 (366)
Q Consensus       213 ~~~~~~~~l~~~~-~-~~~l~~~~~l~G~~~g~~~~~~~~~~se~f~~~--~~g~~~g~~~~~~~~G~~i~gp~l~G~l~  288 (366)
                      +++.+++++++.. + ...++++.++.|+|.|...+...++++|.||++  +++.++++.+++.++|+.+ ||.++|++.
T Consensus        89 ~~~~~g~~~~~~~~~~~~ll~~~~~l~~ig~g~~~~~~~~li~~~~p~~~~~~~~~~~~~~~~~nig~~~-g~~l~g~l~  167 (489)
T PRK10207         89 IVLAIGYFMTGMSLLKPDLIFIALGTIAVGNGLFKANPASLLSKCYPPKDPRLDGAFTLFYMSINIGSLI-SLSLAPVIA  167 (489)
T ss_pred             HHHHHHHHHHHHhccchhHHHHHHHHHHhccccccCCHHHHHHHhcCCCchhhhcchhHHHHHHHHHHHH-HHHHHHHHH
Confidence            8888887776643 2 234557788889999998888899999999887  4578999999999999996 999999998


Q ss_pred             hhhh
Q 017754          289 DYYA  292 (366)
Q Consensus       289 d~~~  292 (366)
                      +..+
T Consensus       168 ~~~g  171 (489)
T PRK10207        168 DKFG  171 (489)
T ss_pred             HhhC
Confidence            8776

>TIGR00897 2A0118 polyol permease family

Probab=99.45  E-value=1.1e-11  Score=122.01  Aligned_cols=178  Identities=14%  Similarity=0.108  Sum_probs=129.4

Q ss_pred             HHHHhhhhhHHHHHHHHHHhhhhHHHHHhcHHHHHHHhCCChhHH--HHHHHHHHHhhhhhhhhhhhhhhhhhccCchhH
Q 017754          129 LPQALMKADFLLLFFSLVLASGSGLTVIDNLGQICQSLGYADTSI--YVSMISIWNFLGRVGGGYFSEAIVRKFAYPRPV  206 (366)
Q Consensus       129 ~~~~l~~~~~~ll~~~~~~~~~~~~~~~~~l~~i~~~~g~s~~~~--~vsl~~i~~~~g~~~~G~lsD~~grr~~~~R~~  206 (366)
                      ++..++++.+|...+..++......+...++|.+.+++|++..+.  ..++..+++.++++..|+++||++||+..    
T Consensus       215 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~g~s~~~~~~~~~~~~~~~~ig~~~~g~l~dr~~~~~~~----  290 (402)
T TIGR00897       215 ATILFTNPNVLLGGMVRIINTIGLFGFAVFLPMFVAELGFSTSEWLQIWGTFFFTNIVFNVIFGIVGDKLGWMNTV----  290 (402)
T ss_pred             HHHHHcChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCChhHHHHHHHHHHHHHHHHHHHHHHHHHhhcchhHH----
Confidence            345778899998877777766666777888999999999987665  56778889999999999999999986543    


Q ss_pred             HHHHHHHHHHH---HHHHHHh---hhhHHHHHHHHHHHHHHhhhhhhHHHHHHHhhCCCchhhHHHHHHhhhhhhHHhhh
Q 017754          207 AMAVAQVVMAF---ALLYYAI---GWPGEIYVTTVLVGLSYGAHWAIVPAAASELFGLKSFGALYNFLTLASPAGSLIFS  280 (366)
Q Consensus       207 ~~~~~~~~~~~---~~~l~~~---~~~~~l~~~~~l~G~~~g~~~~~~~~~~se~f~~~~~g~~~g~~~~~~~~G~~i~g  280 (366)
                      . ..+.+.+++   .+.....   .+....++..++.|++.+...+. ...++|.. ++++|+++|+.+....+|+.+ +
T Consensus       291 ~-~~~~l~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~-~~~~~~~~-~~~~g~~~g~~~~~~~lg~~~-g  366 (402)
T TIGR00897       291 R-WFGGVGCGIFTLALYYIPQHFGHSFAVALIIAIALGIFLAGYVPL-AAVFPTLA-PKHKGAAMSVLNLSAGLSAFL-A  366 (402)
T ss_pred             H-HHHHHHHHHHHHHHHHHHHccCCcHHHHHHHHHHHHHHHHHHHHH-HHHHHhhC-cchhHHHHHHHHHHHHHHHHH-H
Confidence            1 112222222   1111111   12334456667778877765443 45566754 568999999999999999996 9


Q ss_pred             hHHHHHHHhhhhhhhhhhhhhccCCCCCcccCCCCCCcccCCcchHHHHHHHHHHHHHHHHHHHHH
Q 017754          281 GVIASGIYDYYAEKQAGLLWKYNGNMLPVSFRDQETPTCLGSICYSITCGIMAGLCIIAMVMSLIV  346 (366)
Q Consensus       281 p~l~G~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~g~~~~~~~f~i~~~~~~~~~~~~~~~  346 (366)
                      |.++|.++|..+                                |...|++.+++.++++++.+++
T Consensus       367 p~i~g~l~~~~g--------------------------------~~~~~~~~a~~~~i~~~~~~~~  400 (402)
T TIGR00897       367 PAIAVLFIGFFG--------------------------------AIGVVWIFAALYVVSAFLTAFI  400 (402)
T ss_pred             HHHHHHHHhhcc--------------------------------hHHHHHHHHHHHHHHHHHHHHh
Confidence            999999999887                                8889999888887777666554

This family of proteins includes the ribitol and D-arabinitol transporters from Klebsiella pneumoniae and the alpha-ketoglutarate permease from Bacillus subtilis.

>TIGR00902 2A0127 phenyl proprionate permease family protein

Probab=99.44  E-value=9.6e-12  Score=121.55  Aligned_cols=157  Identities=10%  Similarity=-0.018  Sum_probs=124.7

Q ss_pred             CHHHHhhhhhHHHHHHHHHHhhhhHHHHHhcHHHHHHHhCCChhHH--HHHHHHHHHhhhhhhhhhhhhhhhhhccCchh
Q 017754          128 TLPQALMKADFLLLFFSLVLASGSGLTVIDNLGQICQSLGYADTSI--YVSMISIWNFLGRVGGGYFSEAIVRKFAYPRP  205 (366)
Q Consensus       128 ~~~~~l~~~~~~ll~~~~~~~~~~~~~~~~~l~~i~~~~g~s~~~~--~vsl~~i~~~~g~~~~G~lsD~~grr~~~~R~  205 (366)
                      +.++.+|++++|.+.+..++.......+..+.|.+.++.|++...+  ..++..+...++.++.|++.||++.|+..   
T Consensus       197 ~~~~~l~~~~~~~~l~~~~l~~~~~~~~~~~~~~~l~~~g~s~~~~g~l~~~~~~~~i~~~~~~~~l~~r~g~~~~l---  273 (382)
T TIGR00902       197 AFIALLKNPMNLRFLAAVCLIQGAHAAYYGFSAIYWQAAGISASATGLLWGIGVLAEIIIFAFSNKLFQNCSARDLL---  273 (382)
T ss_pred             hHHHHHcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHhHHHHHHHHHHHHHHHHHHHhHHHHhhCCHHHHH---
Confidence            4678889999999888877777777777788899999999987665  55556666777777778888888766544   


Q ss_pred             HHHHHHHHHHHHHHHHHH-hhhhHHHHHHHHHHHHHHhhhhhhHHHHHHHhhCCCchhhHHHHHH-hhhhhhHHhhhhHH
Q 017754          206 VAMAVAQVVMAFALLYYA-IGWPGEIYVTTVLVGLSYGAHWAIVPAAASELFGLKSFGALYNFLT-LASPAGSLIFSGVI  283 (366)
Q Consensus       206 ~~~~~~~~~~~~~~~l~~-~~~~~~l~~~~~l~G~~~g~~~~~~~~~~se~f~~~~~g~~~g~~~-~~~~~G~~i~gp~l  283 (366)
                         .++.++..+..+++. ..+...++...++.|+++|..++....++.+. +.+++++..++.+ +...+|..+ ||.+
T Consensus       274 ---~~~~~~~~~~~~~~~~~~~~~~~~~~q~l~g~~~~~~~~~~~~~i~~~-~~~~~~~~q~~~~~~~~g~g~~~-g~~~  348 (382)
T TIGR00902       274 ---LISAIACVGRWAIIGAIEAFPLIFLLQILHCGTFAVCHLAAMRYIAAQ-PGSEIAKLQALYNALAMGGLIAI-FTAF  348 (382)
T ss_pred             ---HHHHHHHHHHHHHHHhHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhC-CHhhHHHHHHHHHHHHHHHHHHH-HHHH
Confidence               677777777776666 34455677778899999999888888888887 8888999999976 467788886 9999


Q ss_pred             HHHHHhhhh
Q 017754          284 ASGIYDYYA  292 (366)
Q Consensus       284 ~G~l~d~~~  292 (366)
                      +|+++|+.+
T Consensus       349 ~G~l~~~~g  357 (382)
T TIGR00902       349 AGFIYPTLG  357 (382)
T ss_pred             HHHHHHhcc
Confidence            999999886

This family of proteins is involved in the uptake of 3-phenylpropionic acid. This uptake mechanism is for the metabolism of phenylpropanoid compounds and plays an important role in the natural degradative cycle of these aromatic molecules.

>PRK09952 shikimate transporter; Provisional

Probab=99.44  E-value=1.3e-11  Score=122.99  Aligned_cols=178  Identities=11%  Similarity=0.101  Sum_probs=119.4

Q ss_pred             HhhhhhHHHHHH-HHHHhhhhHHHHHhcHHHHHH-HhCCChhHH--HHHHHHHHHhhhhhhhhhhhhhhhhhccCchhHH
Q 017754          132 ALMKADFLLLFF-SLVLASGSGLTVIDNLGQICQ-SLGYADTSI--YVSMISIWNFLGRVGGGYFSEAIVRKFAYPRPVA  207 (366)
Q Consensus       132 ~l~~~~~~ll~~-~~~~~~~~~~~~~~~l~~i~~-~~g~s~~~~--~vsl~~i~~~~g~~~~G~lsD~~grr~~~~R~~~  207 (366)
                      .+++++.|...+ ..++.....+....++|.+.+ .+|++....  ...+..+..+++.++.|+++||++||+..     
T Consensus       245 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~~g~s~~~~~~~~~~~g~~~~i~~~~~g~l~Dr~grr~~~-----  319 (438)
T PRK09952        245 LLRHPGAFLKIIALRLCELLTMYIVTAFALNYSTQNLGLPRELFLNIGLLVGGLSCLTIPCFAWLADRFGRRRVY-----  319 (438)
T ss_pred             HHHchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCchHHH-----
Confidence            556777776543 344444455566677887764 578876543  34455677788999999999999987644     


Q ss_pred             HHHHHHHHHHHHHHHH----hhhhH-HHHHHHHHHHHHHhhhhhhHHHHHHHhhCCCchhhHHHHHHhh-hhhhHHhhhh
Q 017754          208 MAVAQVVMAFALLYYA----IGWPG-EIYVTTVLVGLSYGAHWAIVPAAASELFGLKSFGALYNFLTLA-SPAGSLIFSG  281 (366)
Q Consensus       208 ~~~~~~~~~~~~~l~~----~~~~~-~l~~~~~l~G~~~g~~~~~~~~~~se~f~~~~~g~~~g~~~~~-~~~G~~i~gp  281 (366)
                       ..+.++.+++.+.+.    ..+.. .+++..++.+++.+...+..+++++|.||.+.|+++.++.+.. ..+|+.+ +|
T Consensus       320 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~e~~p~~~r~tg~g~~~~~~~~lgg~~-~p  397 (438)
T PRK09952        320 -ITGALIGTLSAFPFFMALEAQSIFWIVFFSIMLANIAHDMVVCVQQPMFTEMFGASYRYSGAGVGYQVASVVGGGF-TP  397 (438)
T ss_pred             -HHHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCcchhHHHHhHHHHHHHHHHHHH-HH
Confidence             233333333222211    11222 2334455567777777888899999999999999999986554 4478885 99


Q ss_pred             HHHHHHHhhhhhhhhhhhhhccCCCCCcccCCCCCCcccCCcchHHHHHHHHHHHHHHHHHHHHH
Q 017754          282 VIASGIYDYYAEKQAGLLWKYNGNMLPVSFRDQETPTCLGSICYSITCGIMAGLCIIAMVMSLIV  346 (366)
Q Consensus       282 ~l~G~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~g~~~~~~~f~i~~~~~~~~~~~~~~~  346 (366)
                      .+.|++.|.++.                              .|...+.+.+++++++++..+.+
T Consensus       398 ~i~g~l~~~~~~------------------------------~~~~~~~~~~~~~~i~~v~~~~~  432 (438)
T PRK09952        398 FIAAALVTYFGG------------------------------SWHSVAIYLLAGCLISAMTALLM  432 (438)
T ss_pred             HHHHHHHHhcCC------------------------------CchHHHHHHHHHHHHHHHHHHHc
Confidence            999999986640                              28888888887777776666544

>TIGR00881 2A0104 phosphoglycerate transporter family protein

Probab=99.44  E-value=6.5e-13  Score=127.60  Aligned_cols=165  Identities=13%  Similarity=0.176  Sum_probs=129.8

Q ss_pred             HHHhhhhHHHHHhcHHHHHHHhCCChhHH--HHHHHHHHHhhhhhhhhhhhhhhhhhccCchhHHHHHHHHHHHHHHHHH
Q 017754          145 LVLASGSGLTVIDNLGQICQSLGYADTSI--YVSMISIWNFLGRVGGGYFSEAIVRKFAYPRPVAMAVAQVVMAFALLYY  222 (366)
Q Consensus       145 ~~~~~~~~~~~~~~l~~i~~~~g~s~~~~--~vsl~~i~~~~g~~~~G~lsD~~grr~~~~R~~~~~~~~~~~~~~~~l~  222 (366)
                      +++.......+...+|.+.+++|++..+.  ..+...++..++.++.|+++||+|||+..      ..+.++.+++.+++
T Consensus         4 ~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~------~~~~~~~~~~~~~~   77 (379)
T TIGR00881         4 YAAYYLVRKNFALAMPYLVEEIGLSKTDLGLLLSSFSIAYGISKFVMGSVSDRSNPRVFL------PIGLILCAIVNLFF   77 (379)
T ss_pred             hhHHHHhHHhhhhhhHHHHHHhCCCHhHHHHHHHHHHHHHHhhhhhhhHHHHhhCCeehh------HHHHHHHHHHHHHH
Confidence            34444455556677888889999987765  78888999999999999999999998766      66666666666665


Q ss_pred             H-hhhhHHHHHHHHHHHHHHhhhhhhHHHHHHHhhCCCchhhHHHHHHhhhhhhHHhhhh-HHHHHHHhhhhhhhhhhhh
Q 017754          223 A-IGWPGEIYVTTVLVGLSYGAHWAIVPAAASELFGLKSFGALYNFLTLASPAGSLIFSG-VIASGIYDYYAEKQAGLLW  300 (366)
Q Consensus       223 ~-~~~~~~l~~~~~l~G~~~g~~~~~~~~~~se~f~~~~~g~~~g~~~~~~~~G~~i~gp-~l~G~l~d~~~~~~~~~~~  300 (366)
                      . ..+...+++..++.|++.+...+...++++|.++.++|+...++.+....+|..+ +| .+.+.+.+..+        
T Consensus        78 ~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~-~~~~~~~~~~~~~~--------  148 (379)
T TIGR00881        78 GFSTSLWVMAALWALNGIFQGMGWPPCGRTVTKWFSRSERGTWVSFWNCSHNVGGGL-LPPLVLFGIAELYS--------  148 (379)
T ss_pred             HHhhhHHHHHHHHHHHHhhccccCCchHHHHHHhcCHhhheeeEeehhccchhHHHH-HHHHHHHHHHhcCC--------
Confidence            5 3455677788889999999888999999999999999999999999999999996 88 45555555444        


Q ss_pred             hccCCCCCcccCCCCCCcccCCcchHHHHHHHHHHHHHHHHHHHHHhh
Q 017754          301 KYNGNMLPVSFRDQETPTCLGSICYSITCGIMAGLCIIAMVMSLIVVH  348 (366)
Q Consensus       301 ~~~~~~~~~~~~~~~~~~c~g~~~~~~~f~i~~~~~~~~~~~~~~~~~  348 (366)
                                              |++.|++.++++++..++.+++.+
T Consensus       149 ------------------------~~~~~~~~~~~~~~~~~~~~~~~~  172 (379)
T TIGR00881       149 ------------------------WHWVFIVPGIIAIIVSLICFLLLR  172 (379)
T ss_pred             ------------------------chhHHHHHHHHHHHHHHHHheeeC
Confidence                                    999999888777766555554443

>PRK11043 putative transporter; Provisional

Probab=99.44  E-value=7.5e-12  Score=122.75  Aligned_cols=160  Identities=9%  Similarity=0.098  Sum_probs=126.3

Q ss_pred             hhhhHHHHHhcHHHHHHHhCCChhHH--HHHHHHHHHhhhhhhhhhhhhhhhhhccCchhHHHHHHHHHHHHHHHHHH-h
Q 017754          148 ASGSGLTVIDNLGQICQSLGYADTSI--YVSMISIWNFLGRVGGGYFSEAIVRKFAYPRPVAMAVAQVVMAFALLYYA-I  224 (366)
Q Consensus       148 ~~~~~~~~~~~l~~i~~~~g~s~~~~--~vsl~~i~~~~g~~~~G~lsD~~grr~~~~R~~~~~~~~~~~~~~~~l~~-~  224 (366)
                      +......+...+|++.+++|.+..+.  ..+++.++..++.+++|+++||++||+.+      ..+.++..++.++.. .
T Consensus        18 ~~~~~~~~~p~~~~i~~~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~g~r~~~------~~~~~~~~~~~~~~~~~   91 (401)
T PRK11043         18 GFLATDMYLPAFKAIQADLQTSASAVSASLSLFLAGFALGQLLWGPLSDRYGRKPVL------LAGLSLFALGSLGMLWV   91 (401)
T ss_pred             HHHHHHHHHhhHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHhhhhHHhhcCCcHHH------HHHHHHHHHHHHHHHHh
Confidence            33444455666788889999987766  78888999999999999999999998755      555555666555544 3


Q ss_pred             hhhHHHHHHHHHHHHHHhhhhhhHHHHHHHhhCCCchhhHHHHHHhhhhhhHHhhhhHHHHHHHhhhhhhhhhhhhhccC
Q 017754          225 GWPGEIYVTTVLVGLSYGAHWAIVPAAASELFGLKSFGALYNFLTLASPAGSLIFSGVIASGIYDYYAEKQAGLLWKYNG  304 (366)
Q Consensus       225 ~~~~~l~~~~~l~G~~~g~~~~~~~~~~se~f~~~~~g~~~g~~~~~~~~G~~i~gp~l~G~l~d~~~~~~~~~~~~~~~  304 (366)
                      .+...+++.+++.|++.+...+...+.++|.++.++++..++..+....+|..+ +|.++|++.+..+            
T Consensus        92 ~~~~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-g~~i~~~l~~~~g------------  158 (401)
T PRK11043         92 ESAAQLLVLRFVQAVGVCSAAVIWQALVIDRYPAQKANRVFATIMPLVALSPAL-APLLGAWLLNHFG------------  158 (401)
T ss_pred             cCHHHHHHHHHHHHhhhHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHhcCC------------
Confidence            445567778888899888777777788999999998999999988888899986 9999999998776            


Q ss_pred             CCCCcccCCCCCCcccCCcchHHHHHHHHHHHHHHHHHHHHH
Q 017754          305 NMLPVSFRDQETPTCLGSICYSITCGIMAGLCIIAMVMSLIV  346 (366)
Q Consensus       305 ~~~~~~~~~~~~~~c~g~~~~~~~f~i~~~~~~~~~~~~~~~  346 (366)
                                          |++.|++.+++.++..++.+.+
T Consensus       159 --------------------~~~~~~~~~~~~~~~~~~~~~~  180 (401)
T PRK11043        159 --------------------WQAIFATLFAITLLLILPTLRL  180 (401)
T ss_pred             --------------------hHHHHHHHHHHHHHHHHHHHHc
Confidence                                9999998888777766655444

>PRK09528 lacY galactoside permease; Reviewed

Probab=99.44  E-value=2.6e-12  Score=126.97  Aligned_cols=180  Identities=15%  Similarity=0.140  Sum_probs=126.1

Q ss_pred             HHHHhhhhhHHHHHHHHHHhhhhHHHHHhcHHHHHHHh----CCChhHH--HHHHHHHHHhhhhhhhhhhhhhhhhhccC
Q 017754          129 LPQALMKADFLLLFFSLVLASGSGLTVIDNLGQICQSL----GYADTSI--YVSMISIWNFLGRVGGGYFSEAIVRKFAY  202 (366)
Q Consensus       129 ~~~~l~~~~~~ll~~~~~~~~~~~~~~~~~l~~i~~~~----g~s~~~~--~vsl~~i~~~~g~~~~G~lsD~~grr~~~  202 (366)
                      .++.++++.+|.+.+..++.......+..++|.+..+.    +.+....  ..++..+...++.+.+|+++||+++|+..
T Consensus       216 ~~~~l~~~~~~~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~~~~~  295 (420)
T PRK09528        216 ALALLKLPKFWFLVLYVIGVACFYDVFDQQFPNFFASFFATPEQGTRVFGYLNSFQVFLEALIMFFAPFIINRIGAKNAL  295 (420)
T ss_pred             HHHHccCCCeEeehHHHHHHHHHHHHHHHHHHHHHHHHHhccCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcchhh
Confidence            44577888887655443333333333334456555432    3443332  56677778889999999999999997654


Q ss_pred             chhHHHHHHHHHHHHHHHHHH-hhhhHHHHHHHHHHHHHHhhhhhhHHHHHHHhhCCCchhhHHHH-HHhhhhhhHHhhh
Q 017754          203 PRPVAMAVAQVVMAFALLYYA-IGWPGEIYVTTVLVGLSYGAHWAIVPAAASELFGLKSFGALYNF-LTLASPAGSLIFS  280 (366)
Q Consensus       203 ~R~~~~~~~~~~~~~~~~l~~-~~~~~~l~~~~~l~G~~~g~~~~~~~~~~se~f~~~~~g~~~g~-~~~~~~~G~~i~g  280 (366)
                            ..+.++.+++.+++. ..++..+++..++.|++.+........++.+.++.+.+++.++. .++...+|..+ +
T Consensus       296 ------~~~~~l~~~~~~l~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~lg~~i-g  368 (420)
T PRK09528        296 ------LLAGTIMAVRIIGSGFATGPLEVSILKLLHAFEVPFLLVGVFKYITLNFDVRLSATIYLVGFQFAKQLGAVF-L  368 (420)
T ss_pred             ------HHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCccceeeeeeehHHHHHHHHHHH-H
Confidence                  555555555555554 34555666777778888777666667788999999999988766 56778899996 9


Q ss_pred             hHHHHHHHhhhhhhhhhhhhhccCCCCCcccCCCCCCcccCCcchHHHHHHHHHHHHHHHHHHHHHh
Q 017754          281 GVIASGIYDYYAEKQAGLLWKYNGNMLPVSFRDQETPTCLGSICYSITCGIMAGLCIIAMVMSLIVV  347 (366)
Q Consensus       281 p~l~G~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~g~~~~~~~f~i~~~~~~~~~~~~~~~~  347 (366)
                      |.+.|++.|..+                                |+.+|.+.+++.+++.++.+...
T Consensus       369 ~~~~G~l~~~~G--------------------------------~~~~f~~~~~~~~i~~~~~~~~~  403 (420)
T PRK09528        369 STLAGNLYDSIG--------------------------------FQGTYLILGGIVLLFTLISVFTL  403 (420)
T ss_pred             HHHHHHHHHhhC--------------------------------chHHHHHHHHHHHHHHHHHHHHh
Confidence            999999999887                                99999998887777665555443

>COG2271 UhpC Sugar phosphate permease [Carbohydrate transport and metabolism]

Probab=99.43  E-value=1.9e-12  Score=124.59  Aligned_cols=176  Identities=15%  Similarity=0.131  Sum_probs=148.1

Q ss_pred             hhhhHHHHHHHHHHhhhhHHHHHhcHHHHHHHhCCChhHH--HHHHHHHHHhhhhhhhhhhhhhhhhhccCchhHHHHHH
Q 017754          134 MKADFLLLFFSLVLASGSGLTVIDNLGQICQSLGYADTSI--YVSMISIWNFLGRVGGGYFSEAIVRKFAYPRPVAMAVA  211 (366)
Q Consensus       134 ~~~~~~ll~~~~~~~~~~~~~~~~~l~~i~~~~g~s~~~~--~vsl~~i~~~~g~~~~G~lsD~~grr~~~~R~~~~~~~  211 (366)
                      +...|..+++++.+.+..--.+...+|.+.++.|+|.++.  +.+.+++...++..+.|.+|||.+.|+.+      .++
T Consensus        27 r~qif~~~fiGYa~fYl~RknF~~a~p~l~e~~~lsk~~lG~i~s~f~i~YG~sKf~~G~~sDr~npr~fm------~~g  100 (448)
T COG2271          27 RIQIFLSIFIGYAAFYLTRKNFNLAMPALIEDGGLSKTQLGILGSAFSITYGVSKFVMGVLSDRSNPRYFM------AFG  100 (448)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhHhhccHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHhhhhcccCCCceee------hHH
Confidence            3445666677777777766678888999999999999887  89999999999999999999999988776      888


Q ss_pred             HHHHHHHHHHHHhh-hhHHHHHHHHHHHHHHhhhhhhHHHHHHHhhCCCchhhHHHHHHhhhhhhHHhhhhHHH--HHHH
Q 017754          212 QVVMAFALLYYAIG-WPGEIYVTTVLVGLSYGAHWAIVPAAASELFGLKSFGALYNFLTLASPAGSLIFSGVIA--SGIY  288 (366)
Q Consensus       212 ~~~~~~~~~l~~~~-~~~~l~~~~~l~G~~~g~~~~~~~~~~se~f~~~~~g~~~g~~~~~~~~G~~i~gp~l~--G~l~  288 (366)
                      +++.++..+++.+. +...+.+..++-|+.-|..|+....++...|+.++||+.+++-+.+-++|+.+ -|++.  +++.
T Consensus       101 Lilsai~nil~Gfs~s~~~~~~l~~lng~fQg~Gwpp~~~~i~~Wfsr~eRG~~~siWn~shNiGGal-~~~~~~la~~~  179 (448)
T COG2271         101 LILSAIVNILFGFSPSLFLFAVLWVLNGWFQGMGWPPCARTITHWFSRKERGTWWSIWNTSHNIGGAL-APLVALLAFFA  179 (448)
T ss_pred             HHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHcCccccCceEEEehhhhhcccch-HHHHHHHHHHH
Confidence            99999888888754 44456677788899989889999999999999999999999999999999997 68888  8887


Q ss_pred             hhhhhhhhhhhhhccCCCCCcccCCCCCCcccCCcchHHHHHHHHHHHHHHHHHHHHHhh
Q 017754          289 DYYAEKQAGLLWKYNGNMLPVSFRDQETPTCLGSICYSITCGIMAGLCIIAMVMSLIVVH  348 (366)
Q Consensus       289 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~g~~~~~~~f~i~~~~~~~~~~~~~~~~~  348 (366)
                      ++.+                                |+.+|++-++++++..+..+...+
T Consensus       180 ~~~~--------------------------------w~~~f~~pgiiaiival~~~~~~r  207 (448)
T COG2271         180 FHGG--------------------------------WRAAFYFPGIIAIIVALILLFLLR  207 (448)
T ss_pred             hccc--------------------------------hhHHHHHHHHHHHHHHHHHHHHhC
Confidence            7765                                999999999888776666655544

>PRK03545 putative arabinose transporter; Provisional

Probab=99.43  E-value=1.3e-11  Score=120.79  Aligned_cols=179  Identities=13%  Similarity=0.135  Sum_probs=127.5

Q ss_pred             CHHHHhhhhhHHHHHHHHHHhhhhHHHHHhcHHHHHHH-hCCChhHH--HHHHHHHHHhhhhhhhhhhhhhhhhhccCch
Q 017754          128 TLPQALMKADFLLLFFSLVLASGSGLTVIDNLGQICQS-LGYADTSI--YVSMISIWNFLGRVGGGYFSEAIVRKFAYPR  204 (366)
Q Consensus       128 ~~~~~l~~~~~~ll~~~~~~~~~~~~~~~~~l~~i~~~-~g~s~~~~--~vsl~~i~~~~g~~~~G~lsD~~grr~~~~R  204 (366)
                      +.++.++++.+|..++..++.........++++.+.++ .|++....  ..++..+++.+|+++.|+++||++||..   
T Consensus       197 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~g~s~~~~~~~~~~~~~~~~~g~~~~g~l~dr~~~~~~---  273 (390)
T PRK03545        197 SLPLLFRRPALVSLYLLTVVVVTAHFTAYSYIEPFVQQVAGLSENFATLLLLLFGGAGIIGSVLFSRLGNRHPSGFL---  273 (390)
T ss_pred             HHHHHHhCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHHHHHHHHHHHhhccchhHH---
Confidence            35678888888876655555444444445566666655 68876654  6777888999999999999999976532   


Q ss_pred             hHHHHHHHHHHHHHHHHH-H-hhhhHHHHHHHHHHHHHHhhhhhhHHHHHHHhhCCCchhhHHHHHHhhhhhhHHhhhhH
Q 017754          205 PVAMAVAQVVMAFALLYY-A-IGWPGEIYVTTVLVGLSYGAHWAIVPAAASELFGLKSFGALYNFLTLASPAGSLIFSGV  282 (366)
Q Consensus       205 ~~~~~~~~~~~~~~~~l~-~-~~~~~~l~~~~~l~G~~~g~~~~~~~~~~se~f~~~~~g~~~g~~~~~~~~G~~i~gp~  282 (366)
                          ..+..+..++..++ . ..+...++++.++.|++.+.......+.+.+..+ +.++.+.|+.+....+|..+ ||.
T Consensus       274 ----~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~-~~~~~~~g~~~~~~~~g~~~-G~~  347 (390)
T PRK03545        274 ----LIAIALLLVCLLLLLPAANSEWHLSVLSIFWGIAIMCIGLAMQVKVLKLAP-DATDVAMALFSGIFNIGIGA-GAL  347 (390)
T ss_pred             ----HHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHHhcchHHHHHHHHHhCC-CcHHHHHHHHHHHHHHHHHH-HHH
Confidence                22233333333222 2 2334456667778888876655666667777765 68899999999999999996 999


Q ss_pred             HHHHHHhhhhhhhhhhhhhccCCCCCcccCCCCCCcccCCcchHHHHHHHHHHHHHHHHHHHHHh
Q 017754          283 IASGIYDYYAEKQAGLLWKYNGNMLPVSFRDQETPTCLGSICYSITCGIMAGLCIIAMVMSLIVV  347 (366)
Q Consensus       283 l~G~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~g~~~~~~~f~i~~~~~~~~~~~~~~~~  347 (366)
                      ++|+++|..+                                ++..|++.+++.+++++......
T Consensus       348 ~~G~~~~~~g--------------------------------~~~~~~~~~~~~~~~~~~~~~~~  380 (390)
T PRK03545        348 LGNQVSLHLG--------------------------------LSSIGYVGAALALAALVWSILIF  380 (390)
T ss_pred             HHHHHHhccC--------------------------------hhHHHHHHHHHHHHHHHHHHHHc
Confidence            9999999987                                99999999988888777665443

>PRK11273 glpT sn-glycerol-3-phosphate transporter; Provisional

Probab=99.43  E-value=1.1e-11  Score=123.89  Aligned_cols=156  Identities=13%  Similarity=0.155  Sum_probs=115.2

Q ss_pred             HHhcHHHHHHHhCCChhHH--HHHHHHHHHhhhhhhhhhhhhhhhhhccCchhHHHHHHHHHHHHHHHHHHhh-----hh
Q 017754          155 VIDNLGQICQSLGYADTSI--YVSMISIWNFLGRVGGGYFSEAIVRKFAYPRPVAMAVAQVVMAFALLYYAIG-----WP  227 (366)
Q Consensus       155 ~~~~l~~i~~~~g~s~~~~--~vsl~~i~~~~g~~~~G~lsD~~grr~~~~R~~~~~~~~~~~~~~~~l~~~~-----~~  227 (366)
                      +...+|.+.++ |++..+.  ..+...++..++.++.|+++||+|||+.+      ..+.++.+++.++++..     +.
T Consensus        48 ~~~~~p~l~~~-g~s~~~~g~~~~~~~i~~~~~~~~~G~l~Dr~g~k~~l------~~~~~~~~i~~~~~~~~~~~~~~~  120 (452)
T PRK11273         48 FALAMPYLVEQ-GFSRGDLGFALSGISIAYGFSKFIMGSVSDRSNPRVFL------PAGLILAAAVMLFMGFVPWATSSI  120 (452)
T ss_pred             HHHhhHHHHHc-CCCHHHHHHHHHHHHHHHHHHHhhhhhhhhccCCchhH------HHHHHHHHHHHHHHHhhhcccccH
Confidence            44567777766 9887766  78888999999999999999999998755      56666666655554421     33


Q ss_pred             HHHHHHHHHHHHHHhhhhhhHHHHHHHhhCCCchhhHHHHHHhhhhhhHHhhhhHHHHHHHhhhhhhhhhhhhhccCCCC
Q 017754          228 GEIYVTTVLVGLSYGAHWAIVPAAASELFGLKSFGALYNFLTLASPAGSLIFSGVIASGIYDYYAEKQAGLLWKYNGNML  307 (366)
Q Consensus       228 ~~l~~~~~l~G~~~g~~~~~~~~~~se~f~~~~~g~~~g~~~~~~~~G~~i~gp~l~G~l~d~~~~~~~~~~~~~~~~~~  307 (366)
                      ..+++..++.|++.|..++.....+.+.+++++++.+.++.+.+..+|+.+.+|++...+....+               
T Consensus       121 ~~~~~~~~l~gi~~g~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~l~~~~~~~~~g---------------  185 (452)
T PRK11273        121 AVMFVLLFLCGWFQGMGWPPCGRTMVHWWSQKERGGIVSVWNCAHNVGGGLPPLLFLLGMAWFND---------------  185 (452)
T ss_pred             HHHHHHHHHHHHHHhccchHHHHHHHHhCChHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhcc---------------
Confidence            45667778889988887777777889999999999999999999999876445544333332223               


Q ss_pred             CcccCCCCCCcccCCcchHHHHHHHHHHHHHHHHHHHHHhhh
Q 017754          308 PVSFRDQETPTCLGSICYSITCGIMAGLCIIAMVMSLIVVHR  349 (366)
Q Consensus       308 ~~~~~~~~~~~c~g~~~~~~~f~i~~~~~~~~~~~~~~~~~~  349 (366)
                                       |++.|++.++++++..++.+++.++
T Consensus       186 -----------------w~~~f~i~~~~~~~~~~l~~~~~~~  210 (452)
T PRK11273        186 -----------------WHAALYMPAFAAILVALFAFAMMRD  210 (452)
T ss_pred             -----------------HHHHHHHHHHHHHHHHHHHHHHccC
Confidence                             9999999888777766655555443

>PRK10489 enterobactin exporter EntS; Provisional

Probab=99.43  E-value=4.8e-12  Score=124.92  Aligned_cols=174  Identities=16%  Similarity=0.089  Sum_probs=129.8

Q ss_pred             HhhhhhHHHHHHHHHHhhhhHHHHHhcHHHHHHHhCCChhHH--HHHHHHHHHhhhhhhhhhhhhhhhhhccCchhHHHH
Q 017754          132 ALMKADFLLLFFSLVLASGSGLTVIDNLGQICQSLGYADTSI--YVSMISIWNFLGRVGGGYFSEAIVRKFAYPRPVAMA  209 (366)
Q Consensus       132 ~l~~~~~~ll~~~~~~~~~~~~~~~~~l~~i~~~~g~s~~~~--~vsl~~i~~~~g~~~~G~lsD~~grr~~~~R~~~~~  209 (366)
                      ..++++++.++...++...........+|.+.++++.+..+.  ..+...+...++.++.|+++||++||+..      .
T Consensus        13 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~~~~~l~~~~~~~~~G~l~dr~g~~~~l------~   86 (417)
T PRK10489         13 LKTHPAFRAVFIARFISIFGLGLLGVAVPVQIQMMTGSTLQVGLSVTLTGGAMFIGLMVGGVLADRYDRKKLI------L   86 (417)
T ss_pred             HHhCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHhhHHHhhhcCCceEE------E
Confidence            345666776666655555555556667888888888776655  78888889999999999999999998876      3


Q ss_pred             HHHHHHHHHHHHHH------hhhhHHHHHHHHHHHHHHhhhhhhHHHHHHHhhCCCchhhHHHHHHhhhhhhHHhhhhHH
Q 017754          210 VAQVVMAFALLYYA------IGWPGEIYVTTVLVGLSYGAHWAIVPAAASELFGLKSFGALYNFLTLASPAGSLIFSGVI  283 (366)
Q Consensus       210 ~~~~~~~~~~~l~~------~~~~~~l~~~~~l~G~~~g~~~~~~~~~~se~f~~~~~g~~~g~~~~~~~~G~~i~gp~l  283 (366)
                      .+.++.+++.+.+.      ..+...+++..++.|++.+...+...+.+++.++.++++++.++.++...+|..+ ||.+
T Consensus        87 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~-g~~l  165 (417)
T PRK10489         87 LARGTCGLGFIGLALNAFLPEPSLLAIYLLGLWDGFFGSLGVTALLAATPALVGRENLMQAGAITMLTVRLGSVI-SPAL  165 (417)
T ss_pred             ehHHHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHHHHHHHhhhhhhccCHHHHHHHHHHHHHHHhHHHHh-HHHH
Confidence            34443333333221      1233456677788888877777777788999999999999999999999999996 9999


Q ss_pred             HHHHHhhhhhhhhhhhhhccCCCCCcccCCCCCCcccCCcchHHHHHHHHHHHHHHHHHHH
Q 017754          284 ASGIYDYYAEKQAGLLWKYNGNMLPVSFRDQETPTCLGSICYSITCGIMAGLCIIAMVMSL  344 (366)
Q Consensus       284 ~G~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~g~~~~~~~f~i~~~~~~~~~~~~~  344 (366)
                      +|.+.+..+                                |++.|++.++..+++.++.+
T Consensus       166 ~g~l~~~~~--------------------------------~~~~~~~~~~~~~~~~~~~~  194 (417)
T PRK10489        166 GGLLIAAGG--------------------------------VAWNYGLAAAGTFITLLPLL  194 (417)
T ss_pred             HHHHHHHHh--------------------------------hHHHHHHHHHHHHHHHHHHH
Confidence            999998776                                89998887766666554443

>PLN00028 nitrate transmembrane transporter; Provisional

Probab=99.43  E-value=1.3e-11  Score=124.30  Aligned_cols=173  Identities=13%  Similarity=0.106  Sum_probs=119.6

Q ss_pred             HHHHHhhhhHHHHHhcHHHHHHHhCCChhHH--HHHHHHHHHhhhhhhhhhhhhhhhhhccCchhHHHHHHHHHHHHHHH
Q 017754          143 FSLVLASGSGLTVIDNLGQICQSLGYADTSI--YVSMISIWNFLGRVGGGYFSEAIVRKFAYPRPVAMAVAQVVMAFALL  220 (366)
Q Consensus       143 ~~~~~~~~~~~~~~~~l~~i~~~~g~s~~~~--~vsl~~i~~~~g~~~~G~lsD~~grr~~~~R~~~~~~~~~~~~~~~~  220 (366)
                      +.+++...........+|.+.+++|++..+.  ..+...++..++.++.|+++||+|||+..      ..+.++.+++.+
T Consensus        43 ~~~~~~~~~~~~~~~~~~~l~~~~gls~~~~g~~~~~~~~~~~~~~~~~G~l~dr~G~r~~~------~~~~~~~~~~~~  116 (476)
T PLN00028         43 ISFFTCFVSTFAAAPLLPIIRDNLNLTKSDIGNAGIASVSGSIFSRLAMGPVCDLYGPRYGS------AFLLMLTAPAVF  116 (476)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCChHHH------HHHHHHHHHHHH
Confidence            3334444444455566788899999987765  56667778888999999999999997654      555566666655


Q ss_pred             HHH-hhhhHHHHHHHHHHHHHHhhhhhhHHHHHHHhhCCCchhhHHHHHHhhhhhhHHhhhhHHHHHHHhhhhhhhhhhh
Q 017754          221 YYA-IGWPGEIYVTTVLVGLSYGAHWAIVPAAASELFGLKSFGALYNFLTLASPAGSLIFSGVIASGIYDYYAEKQAGLL  299 (366)
Q Consensus       221 l~~-~~~~~~l~~~~~l~G~~~g~~~~~~~~~~se~f~~~~~g~~~g~~~~~~~~G~~i~gp~l~G~l~d~~~~~~~~~~  299 (366)
                      +.+ ..+...+++++++.|++.+... ....+++|+|+.++||.+.|+.+....+|+.+ ++.+.+.+.+.....     
T Consensus       117 ~~~~~~s~~~l~~~r~l~G~~~~~~~-~~~~~i~~~~~~~~rg~a~g~~~~~~~~g~~~-~~~~~~~i~~~~~~~-----  189 (476)
T PLN00028        117 CMSLVSSATGFIAVRFFIGFSLATFV-SCQYWMSTMFNGKIVGTANGIAAGWGNLGGGV-TQLLMPLVFPLIKDA-----  189 (476)
T ss_pred             HHHHhcCHHHHHHHHHHHHHHHHhhH-HHHHHHHHhcChhheeHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHhc-----
Confidence            544 3455566778888898877643 34557899999999999999998877777775 666666554432100     


Q ss_pred             hhccCCCCCcccCCCCCCcccCCcchHHHHHHHHHHHHHHHHHHHHH
Q 017754          300 WKYNGNMLPVSFRDQETPTCLGSICYSITCGIMAGLCIIAMVMSLIV  346 (366)
Q Consensus       300 ~~~~~~~~~~~~~~~~~~~c~g~~~~~~~f~i~~~~~~~~~~~~~~~  346 (366)
                                        .+.+...||++|++.++++++.+++.+++
T Consensus       190 ------------------~~~~~~gWr~~f~i~g~l~l~~~l~~~~~  218 (476)
T PLN00028        190 ------------------GAPSFTAWRIAFFVPGLLHIIMGILVLTL  218 (476)
T ss_pred             ------------------CCcchhhhHHHHHHHHHHHHHHHHHHHHH
Confidence                              00011139999999998887766655544

>TIGR02332 HpaX 4-hydroxyphenylacetate permease

Probab=99.43  E-value=3.5e-12  Score=126.13  Aligned_cols=154  Identities=12%  Similarity=0.089  Sum_probs=107.2

Q ss_pred             hhhhhHHHHHHHHHHhhhhHHHHHhcHHHHHHHh--CCChhHH--HHHHHHHHHhhhhhhhhhhhhhhhhhccCchhHHH
Q 017754          133 LMKADFLLLFFSLVLASGSGLTVIDNLGQICQSL--GYADTSI--YVSMISIWNFLGRVGGGYFSEAIVRKFAYPRPVAM  208 (366)
Q Consensus       133 l~~~~~~ll~~~~~~~~~~~~~~~~~l~~i~~~~--g~s~~~~--~vsl~~i~~~~g~~~~G~lsD~~grr~~~~R~~~~  208 (366)
                      ++++.+|+..+.+++.......+.+++|.+.+++  |++....  +.++..++..+|++++|+++||+++|+..     +
T Consensus       239 ~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~l~~~~~~~s~~~~~~~~~~~~l~~~~g~l~~g~l~dr~~~r~~~-----~  313 (412)
T TIGR02332       239 IFTPAIMLYTLAYFCLTNTLSAINIWTPQILQSFNQGSSNIMIGLLAAIPQFCTIFGMIWWSRHSDRLKERKHH-----T  313 (412)
T ss_pred             hcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCcHHHhHHHhhHHHHHHHHHHHHHHHHhcccCccHHH-----H
Confidence            3457789888888888777778889999999885  5554443  77888899999999999999999875321     1


Q ss_pred             HHHHHHHHHHHHHHH-hhhhHHHHHHHHHHHHHHhhhhhhHHHHHHHhhCCCchhhHHHHHHhhhhhhHHhhhhHHHHHH
Q 017754          209 AVAQVVMAFALLYYA-IGWPGEIYVTTVLVGLSYGAHWAIVPAAASELFGLKSFGALYNFLTLASPAGSLIFSGVIASGI  287 (366)
Q Consensus       209 ~~~~~~~~~~~~l~~-~~~~~~l~~~~~l~G~~~g~~~~~~~~~~se~f~~~~~g~~~g~~~~~~~~G~~i~gp~l~G~l  287 (366)
                      ....++.++++++.. ..++...+.+..+.++|.....+..+....|.+|++++++++|+.+....+|+.+ +|.+.|.+
T Consensus       314 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~a~g~~~~~~~~g~~~-~p~~~g~i  392 (412)
T TIGR02332       314 ALPYLFAAAGWLLASATDHNLIQLLGIIMASMGSFSAMAIFWTTPDQSISLQARAIAIAVINATGNIGSAL-SPFLIGIL  392 (412)
T ss_pred             HHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhhhhhhHHHhhcccccchHHHHHHHHHHHHhhhhhhhh-hhhhcccc
Confidence            223333333332222 2222222222233334433333444455578899999999999999999999996 99999999


Q ss_pred             Hhhhh
Q 017754          288 YDYYA  292 (366)
Q Consensus       288 ~d~~~  292 (366)
                      .|..+
T Consensus       393 ~~~~g  397 (412)
T TIGR02332       393 KDATG  397 (412)
T ss_pred             cccCC
Confidence            99876

This protein is a part of the Major Facilitator Superfamily (Pfam family pfam07690). Member of this family are found in a number of proteobacterial genomes, but only in the context of having genes for 4-hydroxyphenylacetate (4-HPA) degradation. The protein is characterized by Prieto, et al. (PubMed:9315705) as 4-hydroxyphenylacetate permease in E. coli, where 3-HPA and 3,4-dihydroxyphenylacetate are shown to competitively inhibit 4-HPA transport and therefore also interact specificially.

>PRK09556 uhpT sugar phosphate antiporter; Reviewed

Probab=99.42  E-value=2.2e-12  Score=129.53  Aligned_cols=168  Identities=13%  Similarity=0.053  Sum_probs=124.3

Q ss_pred             HHHHHhhhhHHHHHhcHHHHHHHhCCChhHH--HHHHHHHHHhhhhhhhhhhhhhhhhhccCchhHHHHHHHHHHHHHHH
Q 017754          143 FSLVLASGSGLTVIDNLGQICQSLGYADTSI--YVSMISIWNFLGRVGGGYFSEAIVRKFAYPRPVAMAVAQVVMAFALL  220 (366)
Q Consensus       143 ~~~~~~~~~~~~~~~~l~~i~~~~g~s~~~~--~vsl~~i~~~~g~~~~G~lsD~~grr~~~~R~~~~~~~~~~~~~~~~  220 (366)
                      +.+++.+..-..+...+|.+.+++|.+..+.  ..+.+.++..++.+..|+++||+|+|+.+      .++.++.+++.+
T Consensus        36 ~~~~~~y~~r~~~~~~~~~i~~~~~~s~~~~g~~~s~~~~~~~~~~~~~G~l~Dr~g~r~~l------~~~~~~~~~~~~  109 (467)
T PRK09556         36 IGYLTMYLIRKNFKAAQNDMISTYGLSTTELGMIGLGFSITYGVGKTLVGYYADGKNTKQFL------PFLLILSAICML  109 (467)
T ss_pred             HHHHHHHHHhcChhhhhHHHHHhcCCCHHHHHHHHHHHHHHHHHHHhhhhhHhhccCccchH------HHHHHHHHHHHH
Confidence            3333333344445566889999999988775  78888899999999999999999998766      444444433333


Q ss_pred             HHH------hhhhHHHHHHHHHHHHHHhhhhhhHHHHHHHhhCCCchhhHHHHHHhhhhhhHHhhhhHHHHHHHhhhhhh
Q 017754          221 YYA------IGWPGEIYVTTVLVGLSYGAHWAIVPAAASELFGLKSFGALYNFLTLASPAGSLIFSGVIASGIYDYYAEK  294 (366)
Q Consensus       221 l~~------~~~~~~l~~~~~l~G~~~g~~~~~~~~~~se~f~~~~~g~~~g~~~~~~~~G~~i~gp~l~G~l~d~~~~~  294 (366)
                      +++      ..+...+++.+++.|++.+..++....+++++|++++||.+.|+...+.++|..+ ++.+..++.+.... 
T Consensus       110 ~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~rg~a~gi~~~~~~lG~~l-~~~i~~~~~~~~~~-  187 (467)
T PRK09556        110 GFGASLGSGSVSLGLMIALWALSGFFQSTGGPCSYSTITRWTPRRKRGRFLGFWNISHNLGGAG-AGGVALWGANYFFD-  187 (467)
T ss_pred             HHHHHHhcccchHHHHHHHHHHHHHHHhccchHHHHHHHHHcCccceeeeEEeeecccchhhhH-HHHHHHHHHHhhcc-
Confidence            322      2345677888899999988888888899999999999999999999999999996 88887776654310 


Q ss_pred             hhhhhhhccCCCCCcccCCCCCCcccCCcchHHHHHHHHHHHHHHHHHHHHH
Q 017754          295 QAGLLWKYNGNMLPVSFRDQETPTCLGSICYSITCGIMAGLCIIAMVMSLIV  346 (366)
Q Consensus       295 ~~~~~~~~~~~~~~~~~~~~~~~~c~g~~~~~~~f~i~~~~~~~~~~~~~~~  346 (366)
                                                  .+|+..|.+.+++.++.+++.+++
T Consensus       188 ----------------------------~~~~~~f~~~g~~~~~~~i~~~~~  211 (467)
T PRK09556        188 ----------------------------GHVIGMFIFPSIIALIIGFIGLRY  211 (467)
T ss_pred             ----------------------------CcchhHHHHHHHHHHHHHHHHHHh
Confidence                                        028888888777766655555444

>PRK09705 cynX putative cyanate transporter; Provisional

Probab=99.42  E-value=1e-11  Score=121.98  Aligned_cols=130  Identities=14%  Similarity=0.143  Sum_probs=112.2

Q ss_pred             HHHhcHHHHHHHhCCChhHH--HHHHHHHHHhhhhhhhhhhhhhhhhhccCchhHHHHHHHHHHHHHHHHHH-hhhhHHH
Q 017754          154 TVIDNLGQICQSLGYADTSI--YVSMISIWNFLGRVGGGYFSEAIVRKFAYPRPVAMAVAQVVMAFALLYYA-IGWPGEI  230 (366)
Q Consensus       154 ~~~~~l~~i~~~~g~s~~~~--~vsl~~i~~~~g~~~~G~lsD~~grr~~~~R~~~~~~~~~~~~~~~~l~~-~~~~~~l  230 (366)
                      .....+|.+.+++|.+..+.  ..+.+.++..++.+..|+++||+|||+.+      ..+..+.+++.++.+ .++...+
T Consensus        27 ~~~~~lp~i~~~~~~s~~~~g~~~s~~~~~~~l~~~~~g~l~dr~G~r~~l------~~~~~l~~~~~~~~~~a~~~~~l  100 (393)
T PRK09705         27 SVGPLLPQLRQASGMSFSVAALLTALPVVTMGGLALAGSWLHQHVSERRSV------AISLLLIAVGALMRELYPQSALL  100 (393)
T ss_pred             ccchhHHHHHHHhCCCHHHHHHHHHHHHHHHHHHhhhhHHHHHHhCchHHH------HHHHHHHHHHHHHHHHCcchHHH
Confidence            34567899999999988776  88888999999999999999999998877      788888888888776 4456678


Q ss_pred             HHHHHHHHHHHhhhhhhHHHHHHHhhCCCchhhHHHHHHhhhhhhHHhhhhHHHHHHHhhh
Q 017754          231 YVTTVLVGLSYGAHWAIVPAAASELFGLKSFGALYNFLTLASPAGSLIFSGVIASGIYDYY  291 (366)
Q Consensus       231 ~~~~~l~G~~~g~~~~~~~~~~se~f~~~~~g~~~g~~~~~~~~G~~i~gp~l~G~l~d~~  291 (366)
                      ++++++.|++.+..++....++.+.|+ ++++.+.+....+..+|..+ |+.+.+++.++.
T Consensus       101 l~~r~l~Gig~~~~~~~~~~~~~~~~~-~~~~~~~g~~~~~~~~g~~~-g~~~~~~l~~~~  159 (393)
T PRK09705        101 LSSALLGGVGIGIIQAVMPSVIKRRFQ-QRTPLVMGLWSAALMGGGGL-GAAITPWLVQHS  159 (393)
T ss_pred             HHHHHHHHhHHHHHhhhhhHHHHHHcc-ccchhHHHHHHHHHHHHHHH-HHHHHHHHHHhc
Confidence            889999999999988888889999996 78999999999998999986 899999888765

>TIGR00899 2A0120 sugar efflux transporter

Probab=99.41  E-value=2.5e-11  Score=117.27  Aligned_cols=177  Identities=17%  Similarity=0.137  Sum_probs=123.6

Q ss_pred             HHHHhhhhhHHHHHHHHHHhhhhHHHHHhcHHHHH-HHhCCChhHH--HHHHHHHHHhhhhhhhhhhhhhhhhhccCchh
Q 017754          129 LPQALMKADFLLLFFSLVLASGSGLTVIDNLGQIC-QSLGYADTSI--YVSMISIWNFLGRVGGGYFSEAIVRKFAYPRP  205 (366)
Q Consensus       129 ~~~~l~~~~~~ll~~~~~~~~~~~~~~~~~l~~i~-~~~g~s~~~~--~vsl~~i~~~~g~~~~G~lsD~~grr~~~~R~  205 (366)
                      .++.++++++|.++...++.......+..++|.+. +++|.+....  ..+...+...+++++.|+++||++||+..   
T Consensus       192 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~g~l~~r~g~~~~~---  268 (375)
T TIGR00899       192 VRGLLASRDTRLLFVACTLMWGCNILYIINMPLLIIHELGLPDKLAGLMMGTAAGLEIPFMLLAGYLIKRFGKRRLM---  268 (375)
T ss_pred             hhhhhcCcchHHHHHHHHHHHHHHHHHHhhhHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHhHHHHHHHhcchhHH---
Confidence            44466777787766555554443344455667665 5578877654  44555566777889999999999987644   


Q ss_pred             HHHHHHHHHHHHHHHHHH-hhhhHHHHHHHHHHHHHHhhhhhhHHHHHHHhhCCCchhhHHHHHHhhhhhhHHhhhhHHH
Q 017754          206 VAMAVAQVVMAFALLYYA-IGWPGEIYVTTVLVGLSYGAHWAIVPAAASELFGLKSFGALYNFLTLASPAGSLIFSGVIA  284 (366)
Q Consensus       206 ~~~~~~~~~~~~~~~l~~-~~~~~~l~~~~~l~G~~~g~~~~~~~~~~se~f~~~~~g~~~g~~~~~~~~G~~i~gp~l~  284 (366)
                         ..+.++..+.+..+. ..+...+++..++.|++.|...+....++.|.+|. +++.+.++.+....+|..+ +|.++
T Consensus       269 ---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~g~~~-g~~~~  343 (375)
T TIGR00899       269 ---LLAALAGVAFYTGLAADNSLWALLMLQLLNAIFIGILAGIGMLYFQDLMPG-RAGAATTLYTNTGRVGWII-AGSVG  343 (375)
T ss_pred             ---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcc-hhhHHHHHHHHHHHHHHHH-HHHHH
Confidence               333333333333332 23344455566777888888777777888898865 5679999999999999996 99999


Q ss_pred             HHHHhhhhhhhhhhhhhccCCCCCcccCCCCCCcccCCcchHHHHHHHHHHHHHHHHHHHH
Q 017754          285 SGIYDYYAEKQAGLLWKYNGNMLPVSFRDQETPTCLGSICYSITCGIMAGLCIIAMVMSLI  345 (366)
Q Consensus       285 G~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~g~~~~~~~f~i~~~~~~~~~~~~~~  345 (366)
                      |.+.|..+                                |+..|++.+++++++.++...
T Consensus       344 g~~~~~~g--------------------------------~~~~~~~~~~~~~~~~~~~~~  372 (375)
T TIGR00899       344 GILAERWS--------------------------------YHAVYWFAIVMLIVALFCLLL  372 (375)
T ss_pred             HHHHHhcc--------------------------------chhHHHHHHHHHHHHHHHHhe
Confidence            99999876                                999999888877777665543

This family of proteins is an efflux system for lactose, glucose, aromatic glucosides and galactosides, cellobiose, maltose, a-methyl glucoside and other sugar compounds. They are found in both gram-negative and gram-postitive bacteria.

>PRK12382 putative transporter; Provisional

Probab=99.40  E-value=1.2e-11  Score=120.87  Aligned_cols=152  Identities=13%  Similarity=0.071  Sum_probs=113.9

Q ss_pred             hhhhHHHHHHHHHHhhhhHHHHHhcHHHH-HHHhCCChhHH--HHHHHHHHHhhhhhhhhhhhhhhhhhccCchhHHHHH
Q 017754          134 MKADFLLLFFSLVLASGSGLTVIDNLGQI-CQSLGYADTSI--YVSMISIWNFLGRVGGGYFSEAIVRKFAYPRPVAMAV  210 (366)
Q Consensus       134 ~~~~~~ll~~~~~~~~~~~~~~~~~l~~i-~~~~g~s~~~~--~vsl~~i~~~~g~~~~G~lsD~~grr~~~~R~~~~~~  210 (366)
                      .+..+|.++++.++...........+|.+ .+++|.+....  ..+...+...++++.+|+++||+|||+.+      ..
T Consensus        13 ~~~~~~~~~~~~~~~~~~~~~~~p~l~~~l~~~lg~s~~~~g~~~s~~~~~~~i~~~~~G~l~Dr~g~r~~l------~~   86 (392)
T PRK12382         13 ANFSLFRIAFAVFLTYMTVGLPLPVIPLFVHHDLGFGNTMVGIAVGIQFLATVLTRGYAGRLADQYGAKRSA------LQ   86 (392)
T ss_pred             ccccHHHHHHHHHHHHHHHHHHhhhhhHHHHHhcCCcHHHHHHHHHHHHHHHHHHhhhhhHHHHhhcchHHH------HH
Confidence            44456666666666555555556667754 56889987766  88999999999999999999999998765      44


Q ss_pred             HHHHHHHHHH---HHH------hhhhHHHHHHHHHHHHHHhhhhhhHHHHHHHhhCCCchhhHHHHHHhhhhhhHHhhhh
Q 017754          211 AQVVMAFALL---YYA------IGWPGEIYVTTVLVGLSYGAHWAIVPAAASELFGLKSFGALYNFLTLASPAGSLIFSG  281 (366)
Q Consensus       211 ~~~~~~~~~~---l~~------~~~~~~l~~~~~l~G~~~g~~~~~~~~~~se~f~~~~~g~~~g~~~~~~~~G~~i~gp  281 (366)
                      +.+...++.+   +..      ..+...+++++++.|++.+...+...+++.|.+++++|+++.++...+..+|..+ ||
T Consensus        87 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~~~~~~~~~~r~~a~~~~~~~~~~g~~~-g~  165 (392)
T PRK12382         87 GMLACGLAGLAYLLAAILPVSAPFKFALLVVGRLILGFGESQLLTGALTWGLGLVGPKHSGKVMSWNGMAMYGALAA-GA  165 (392)
T ss_pred             HHHHHHHHHHHHHhhhccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCccccchhhhHHHHHHHHHHHH-HH
Confidence            3333333222   111      1233467788899999988877777788899999999999999999988888886 99


Q ss_pred             HHHHHHHhhhh
Q 017754          282 VIASGIYDYYA  292 (366)
Q Consensus       282 ~l~G~l~d~~~  292 (366)
                      .+++++.+..+
T Consensus       166 ~~~~~l~~~~g  176 (392)
T PRK12382        166 PLGLLLHSHFG  176 (392)
T ss_pred             HHHHHHHhccC
Confidence            99999988765

>TIGR00903 2A0129 major facilitator 4 family protein

Probab=99.40  E-value=1.9e-11  Score=119.23  Aligned_cols=176  Identities=16%  Similarity=0.098  Sum_probs=125.1

Q ss_pred             HHHHhhhhhHHHHHHHHHHhhhhHHHHHhcHHHHHHHhCCChhHH-HHHHHHHHHhhhhhhhhhhhhhhhhhccCchhHH
Q 017754          129 LPQALMKADFLLLFFSLVLASGSGLTVIDNLGQICQSLGYADTSI-YVSMISIWNFLGRVGGGYFSEAIVRKFAYPRPVA  207 (366)
Q Consensus       129 ~~~~l~~~~~~ll~~~~~~~~~~~~~~~~~l~~i~~~~g~s~~~~-~vsl~~i~~~~g~~~~G~lsD~~grr~~~~R~~~  207 (366)
                      +++.++++.+|.+.+.+++.....+.+.+|+|++.++.|++.... ..++..+.   |.+..++++||..||..  |...
T Consensus       185 ~~~ll~~~~~~~~~~~~~~~~~~~~~~~~wlp~~L~~~g~s~~~~~~~~l~~~~---g~~g~~~~~d~~~r~~~--r~~~  259 (368)
T TIGR00903       185 FGALAGRKDLWIIGAILGFGVALFDNLAIWLEAALRPAGLEDIAGDAVALAILA---GLIGVAVIPDRVARAGL--RSIY  259 (368)
T ss_pred             HHHHHcChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCChHHHHHHHHHHHH---HHHHHHHhhHHhhhhhh--HHHH
Confidence            567889999999999999998888899999999999888876422 44444443   44556899999877532  2222


Q ss_pred             HHHHHHHHHHHHHHHHh-hhhHHHHHHHHHHHHHHhhhhhhHHHHHHHhhCCCchhhHHHHHHhhhhhhHHhhhhHHHHH
Q 017754          208 MAVAQVVMAFALLYYAI-GWPGEIYVTTVLVGLSYGAHWAIVPAAASELFGLKSFGALYNFLTLASPAGSLIFSGVIASG  286 (366)
Q Consensus       208 ~~~~~~~~~~~~~l~~~-~~~~~l~~~~~l~G~~~g~~~~~~~~~~se~f~~~~~g~~~g~~~~~~~~G~~i~gp~l~G~  286 (366)
                      .....++++++...+.. .++........+.+++.+..++..+++.+|.+|++.||++.|+.+..+.+|+.+ +|.+.|.
T Consensus       260 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~p~~~rgt~~G~~~~~g~~~~~~-~~~~~~~  338 (368)
T TIGR00903       260 IRAAALLIAAFFLALAFELNRLALFAFIGIAGLLMLPAYAIIMDWIGKFCDKELHGKAAGAIGFTSRAISVA-LALAAML  338 (368)
T ss_pred             HHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHhhhhhHHHHHHHHHHhcchhhcCcccchhhHHHHHHHHH-HHHHHHH
Confidence            23233333444333332 223333444555667777777778889999999999999999999999999986 8988887


Q ss_pred             HHhhhhhhhhhhhhhccCCCCCcccCCCCCCcccCCcchHHHHHHHHHHHHHHHHHHH
Q 017754          287 IYDYYAEKQAGLLWKYNGNMLPVSFRDQETPTCLGSICYSITCGIMAGLCIIAMVMSL  344 (366)
Q Consensus       287 l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~g~~~~~~~f~i~~~~~~~~~~~~~  344 (366)
                      +..  +                                ....|.+.++.++++++..+
T Consensus       339 ~~~--~--------------------------------~~~~f~~~~~~~~i~~~~~~  362 (368)
T TIGR00903       339 FIS--S--------------------------------AEAYFTFLAILITIAFAIAL  362 (368)
T ss_pred             Hhc--C--------------------------------HHHHHHHHHHHHHHHHHHHH
Confidence            773  3                                56677777777777666643

This family of proteins are uncharacterized proteins from archaea. This family includes proteins from Archaeoglobus fulgidus and Aeropyrum pernix.

>TIGR00881 2A0104 phosphoglycerate transporter family protein

Probab=99.40  E-value=1.8e-11  Score=117.58  Aligned_cols=160  Identities=14%  Similarity=0.177  Sum_probs=113.9

Q ss_pred             HHHHhhhhhHHHHHHHHHHhhhhHHHHHhcHHHHHHH-hCCChhHH--HHHHHHHHHhhhhhhhhhhhhhhhhhccCchh
Q 017754          129 LPQALMKADFLLLFFSLVLASGSGLTVIDNLGQICQS-LGYADTSI--YVSMISIWNFLGRVGGGYFSEAIVRKFAYPRP  205 (366)
Q Consensus       129 ~~~~l~~~~~~ll~~~~~~~~~~~~~~~~~l~~i~~~-~g~s~~~~--~vsl~~i~~~~g~~~~G~lsD~~grr~~~~R~  205 (366)
                      .++.++++.+|.+.+..++.......+..++|.+.++ +|++....  ..++..++..+|+++.|+++||..+++..   
T Consensus       209 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~~r~~~~~~~---  285 (379)
T TIGR00881       209 LQYVLLNKVLWYISLGYVFVYVVRTGILDWSPLYLTQEKGFSKEKASWAFTLYELGGLVGTLLAGWLSDKLFNGRRG---  285 (379)
T ss_pred             HHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHcchhHHHHHHHHHHHcCCcch---
Confidence            4566788889988877777776666777788888754 68876654  67788889999999999999987544322   


Q ss_pred             HHHHHHHHHHHHHHHHHHh---hhhHHHHHHHHHHHHHHhhhhhhHHHHHHHhhCCCchhhHHHHHHhhhhhhHHhhhhH
Q 017754          206 VAMAVAQVVMAFALLYYAI---GWPGEIYVTTVLVGLSYGAHWAIVPAAASELFGLKSFGALYNFLTLASPAGSLIFSGV  282 (366)
Q Consensus       206 ~~~~~~~~~~~~~~~l~~~---~~~~~l~~~~~l~G~~~g~~~~~~~~~~se~f~~~~~g~~~g~~~~~~~~G~~i~gp~  282 (366)
                      ...........++...+..   .+.....+..++.|++.++........++|.+|++++|++.|+.+....+|+.+ +|.
T Consensus       286 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~-~~~  364 (379)
T TIGR00881       286 PLAVFFMALIIVSLLVYWLNPAANPLMDLICLFALGFLVYGPQMLIGVIASELAPKKAAGTAAGFVGFFAYLGGIL-AGL  364 (379)
T ss_pred             HHHHHHHHHHHHHHHHHhcCcchhHHHHHHHHHHHHHHHhhhhHHHHHHHHHhcCcchhHHHHHHHHHhhhhhhhh-hhh
Confidence            1111222222222222221   122334455566676655656666778899999999999999999999999996 999


Q ss_pred             HHHHHHhhhh
Q 017754          283 IASGIYDYYA  292 (366)
Q Consensus       283 l~G~l~d~~~  292 (366)
                      +.|.+.|..+
T Consensus       365 ~~g~l~~~~g  374 (379)
T TIGR00881       365 PLGYLADGFG  374 (379)
T ss_pred             hHHHHHHhhc
Confidence            9999999876

>PRK10406 alpha-ketoglutarate transporter; Provisional

Probab=99.40  E-value=3.6e-11  Score=119.48  Aligned_cols=180  Identities=12%  Similarity=0.010  Sum_probs=112.7

Q ss_pred             CHHHHhhhhhHHHHHHHHHHh-hhhHHHHHhcHHHHHH-HhCCChhHH--HHHHHHHHHhhhhhhhhhhhhhhhhhccCc
Q 017754          128 TLPQALMKADFLLLFFSLVLA-SGSGLTVIDNLGQICQ-SLGYADTSI--YVSMISIWNFLGRVGGGYFSEAIVRKFAYP  203 (366)
Q Consensus       128 ~~~~~l~~~~~~ll~~~~~~~-~~~~~~~~~~l~~i~~-~~g~s~~~~--~vsl~~i~~~~g~~~~G~lsD~~grr~~~~  203 (366)
                      ++++.++++++|.+.+..++. ....+.+..|+|++.+ .+|++..+.  ..++..+...++.++.|+++||++||+.. 
T Consensus       234 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~lp~~l~~~~g~s~~~~~~~~~i~~~~~~i~~~~~G~l~Dr~grr~~~-  312 (432)
T PRK10406        234 SLKGLWRNRRAFIMVLGFTAAGSLCFYTFTTYMQKYLVNTAGMHANVASGIMTAALFVFMLIQPLIGALSDKIGRRTSM-  312 (432)
T ss_pred             cHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCchHHH-
Confidence            577888888888776655543 4555667788999875 478886554  56666777788899999999999987533 


Q ss_pred             hhHHHHHHHHHHHHHH---HH-HHhh-hhHHHHHHHHHHHHHHhhhhhhHHHHHHHhhCCCchhhHHHHHHhhhhh-hHH
Q 017754          204 RPVAMAVAQVVMAFAL---LY-YAIG-WPGEIYVTTVLVGLSYGAHWAIVPAAASELFGLKSFGALYNFLTLASPA-GSL  277 (366)
Q Consensus       204 R~~~~~~~~~~~~~~~---~l-~~~~-~~~~l~~~~~l~G~~~g~~~~~~~~~~se~f~~~~~g~~~g~~~~~~~~-G~~  277 (366)
                           .+..++.++..   +. .... ++...+....+.+++.+...+..+.+++|+||++.|++++|+.+....+ .+.
T Consensus       313 -----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~fp~~~r~t~~g~~~~~g~~~~g~  387 (432)
T PRK10406        313 -----LCFGSLAALFTVPILSALQNVSSPYAAFGLVMCALLIVSFYTSISGILKAEMFPAQVRALGVGLSYAVANALFGG  387 (432)
T ss_pred             -----HHHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCccchhhhHHHHHHHHHHHh
Confidence                 22222111111   11 1111 1222222222222333444456677889999999999999998876554 344


Q ss_pred             hhhhHHHHHHHhhhhhhhhhhhhhccCCCCCcccCCCCCCcccCCcchHHHHHHHHHHHHHHHHHHHHH
Q 017754          278 IFSGVIASGIYDYYAEKQAGLLWKYNGNMLPVSFRDQETPTCLGSICYSITCGIMAGLCIIAMVMSLIV  346 (366)
Q Consensus       278 i~gp~l~G~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~g~~~~~~~f~i~~~~~~~~~~~~~~~  346 (366)
                      . .|.+.+.+ +.++                               .|...+++.+++++++.+..+++
T Consensus       388 ~-~p~~~~~l-~~~g-------------------------------~~~~~~~~~~~~~~i~~~~~~~l  423 (432)
T PRK10406        388 S-AEYVALSL-KSIG-------------------------------METAFFWYVTLMAVVAFLVSLML  423 (432)
T ss_pred             H-HHHHHHHH-HHhC-------------------------------CCcHHHHHHHHHHHHHHHHHHHh
Confidence            3 67777754 5544                               26666666666666666555543

>PF06609 TRI12: Fungal trichothecene efflux pump (TRI12); InterPro: IPR010573 This family consists of several fungal specific trichothecene efflux pump proteins

Probab=99.40  E-value=7.4e-12  Score=127.64  Aligned_cols=176  Identities=17%  Similarity=0.105  Sum_probs=128.8

Q ss_pred             hhhhHHHHHHHHHHhhhh----HHHHHhcHHHHHHHhCCChhHH-HHHHHHHHHhhhhhhhhhhhhhhhhhccCchhHHH
Q 017754          134 MKADFLLLFFSLVLASGS----GLTVIDNLGQICQSLGYADTSI-YVSMISIWNFLGRVGGGYFSEAIVRKFAYPRPVAM  208 (366)
Q Consensus       134 ~~~~~~ll~~~~~~~~~~----~~~~~~~l~~i~~~~g~s~~~~-~vsl~~i~~~~g~~~~G~lsD~~grr~~~~R~~~~  208 (366)
                      ++++++..+.++.+....    .......++++.+++|-++... +.+...+...++.++.|.+||.+|||+..      
T Consensus        38 ~s~~~i~~~~~~~~~~~~~~~~~~~~a~~l~~I~~diG~~~~~~w~~~~~~l~~av~~~~~G~LSDlfGRr~~~------  111 (599)
T PF06609_consen   38 RSPRFIASFAAFSLAVIAAYFVLVLPASILPYINADIGGSDNWSWFSTAWTLASAVSFPFVGRLSDLFGRRYFF------  111 (599)
T ss_pred             eCHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHhcCCCccchHHHHHHHHHHHHHHHhhHHHHHHhcchHHH------
Confidence            455666554433333222    2223455788899998776554 77778889999999999999999998766      


Q ss_pred             HHHHHHHHHHHHHHHh-hhhHHHHHHHHHHHHHHhhhhhhHHHHHHHhhCCCchhhHHHHHHhhhhhhHHhhhhHHHHHH
Q 017754          209 AVAQVVMAFALLYYAI-GWPGEIYVTTVLVGLSYGAHWAIVPAAASELFGLKSFGALYNFLTLASPAGSLIFSGVIASGI  287 (366)
Q Consensus       209 ~~~~~~~~~~~~l~~~-~~~~~l~~~~~l~G~~~g~~~~~~~~~~se~f~~~~~g~~~g~~~~~~~~G~~i~gp~l~G~l  287 (366)
                      .++.++..+|.++.+. .+...+..+..+.|+|.|... +....++|+.|.|.|+..+++......+...+ ||.++..+
T Consensus       112 i~g~~l~vvG~Iv~atA~~~~~~iag~~l~GvgaG~~~-~~~~~isEl~p~k~R~~~~~~~~~~~i~~~~~-~~~ia~~~  189 (599)
T PF06609_consen  112 IIGSLLGVVGSIVCATAQNMNTFIAGMVLYGVGAGVQE-LAALAISELVPNKWRGLGLAIASIPFIITTWI-SPLIAQLF  189 (599)
T ss_pred             HHHHHHHHhHHHHhhcCCcHHHHHHHHHHHHHhhHHHH-HHHHHHHHhcccchhhhHhHHHHHHHHhhhcc-cHHHHHHh
Confidence            8888999999988774 455677788899999988765 45667899999999988887766554444443 66666555


Q ss_pred             HhhhhhhhhhhhhhccCCCCCcccCCCCCCcccCCcchHHHHHHHHHHHHHHHHHHHHHhhh
Q 017754          288 YDYYAEKQAGLLWKYNGNMLPVSFRDQETPTCLGSICYSITCGIMAGLCIIAMVMSLIVVHR  349 (366)
Q Consensus       288 ~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~g~~~~~~~f~i~~~~~~~~~~~~~~~~~~  349 (366)
                      ....                                +|||.|++.++...+++++..+++++
T Consensus       190 ~~~~--------------------------------~WRw~~~~~~i~~~i~~vl~~~fY~P  219 (599)
T PF06609_consen  190 AAHS--------------------------------GWRWIFYIFIIWSGIALVLIFFFYFP  219 (599)
T ss_pred             ccCC--------------------------------CcchHHHHHHHHHHHHHHHHHHHhCC
Confidence            4332                                39999999999888887776666554

Many of the genes involved in trichothecene toxin biosynthesis in Fusarium sporotrichioides are present within a gene cluster. It has been suggested that TRI12 may play a role in F. sporotrichioides self-protection against trichothecenes [].

>TIGR00883 2A0106 metabolite-proton symporter

Probab=99.40  E-value=1.6e-11  Score=118.53  Aligned_cols=160  Identities=18%  Similarity=0.110  Sum_probs=112.2

Q ss_pred             CCHHHHhhhhh--HHHHHHHHHHhhhhHHHHHhcHHHHH-HHhCCChhHH--HHHHHHHHHhhhhhhhhhhhhhhhhhcc
Q 017754          127 FTLPQALMKAD--FLLLFFSLVLASGSGLTVIDNLGQIC-QSLGYADTSI--YVSMISIWNFLGRVGGGYFSEAIVRKFA  201 (366)
Q Consensus       127 ~~~~~~l~~~~--~~ll~~~~~~~~~~~~~~~~~l~~i~-~~~g~s~~~~--~vsl~~i~~~~g~~~~G~lsD~~grr~~  201 (366)
                      .++++.++++.  ++......++..........++|.+. +++|++....  ..++..+++.+++++.|+++||++||+.
T Consensus       208 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~~~~  287 (394)
T TIGR00883       208 GPIRETLTKHRKPFLLGLGLVIATTTTFYLITTYLPTYLTQTLGLSANSALLVLMLSLILFFITIPLSGALSDRIGRRPV  287 (394)
T ss_pred             CCHHHHHHhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHH
Confidence            35677777765  66666666555555556667788888 5578876654  6777888999999999999999998754


Q ss_pred             CchhHHHHHHHHHHHHHHHH-HH-h--hhhHHHHHHHHHHHHHHhhhhhhHHHHHHHhhCCCchhhHHHHH-HhhhhhhH
Q 017754          202 YPRPVAMAVAQVVMAFALLY-YA-I--GWPGEIYVTTVLVGLSYGAHWAIVPAAASELFGLKSFGALYNFL-TLASPAGS  276 (366)
Q Consensus       202 ~~R~~~~~~~~~~~~~~~~l-~~-~--~~~~~l~~~~~l~G~~~g~~~~~~~~~~se~f~~~~~g~~~g~~-~~~~~~G~  276 (366)
                      .     +....+....+..+ .. .  .+....+...++.|++.+..++...+.++|.+|.+.+++++++. ++...+|+
T Consensus       288 ~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~g~  362 (394)
T TIGR00883       288 L-----IIFTVLAALLAVPLLMALLDSGSFTLFFFLVLGLALIGGMYTGPMGSFLPELFPTEVRYTGASLAYNLAGAIFG  362 (394)
T ss_pred             H-----HHHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHHhhhHHHHHHHhCCccceeeEeeehhHhHHHHHh
Confidence            3     11222222222111 11 1  22334455666778888888888899999999999999999874 55566788


Q ss_pred             HhhhhHHHHHHHhhhh
Q 017754          277 LIFSGVIASGIYDYYA  292 (366)
Q Consensus       277 ~i~gp~l~G~l~d~~~  292 (366)
                      .+ +|.++|++.|..+
T Consensus       363 ~~-~p~~~g~l~~~~g  377 (394)
T TIGR00883       363 GF-APYIAAALVAMTG  377 (394)
T ss_pred             hH-HHHHHHHHHHHcC
Confidence            75 9999999999876

This model represents the metabolite:H+ symport subfamily of the major facilitator superfamily (pfam00083), including citrate-H+ symporters, dicarboxylate:H+ symporters, the proline/glycine-betaine transporter ProP, etc.

>PRK10077 xylE D-xylose transporter XylE; Provisional

Probab=99.39  E-value=1.5e-11  Score=123.16  Aligned_cols=159  Identities=17%  Similarity=0.143  Sum_probs=114.2

Q ss_pred             HhcHHHHHHHh--------CCChhHH--HHHHHHHHHhhhhhhhhhhhhhhhhhccCchhHHHHHHHHHHHHHHHHHHhh
Q 017754          156 IDNLGQICQSL--------GYADTSI--YVSMISIWNFLGRVGGGYFSEAIVRKFAYPRPVAMAVAQVVMAFALLYYAIG  225 (366)
Q Consensus       156 ~~~l~~i~~~~--------g~s~~~~--~vsl~~i~~~~g~~~~G~lsD~~grr~~~~R~~~~~~~~~~~~~~~~l~~~~  225 (366)
                      ....|.+.+.+        +.+....  ..+.+.++..+|.+++|+++||+|||+.+      .++.+++.++.+..+..
T Consensus        32 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~ig~~~~~~~~G~l~dr~Grr~~~------~~~~~l~~i~~~~~~~~  105 (479)
T PRK10077         32 SGTVESLNTVFVAPQNLSESAANSLLGFCVASALIGCIIGGALGGYCSNRFGRRDSL------KIAAVLFFISALGSAWP  105 (479)
T ss_pred             hHhHHHHHHHhcccccccccCChhHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHH------HHHHHHHHHHHHHHHhh
Confidence            33445565555        6665554  78999999999999999999999998766      55555555554443321


Q ss_pred             ----------h---hHHHHHHHHHHHHHHhhhhhhHHHHHHHhhCCCchhhHHHHHHhhhhhhHHhhhhHHHHHHHhhhh
Q 017754          226 ----------W---PGEIYVTTVLVGLSYGAHWAIVPAAASELFGLKSFGALYNFLTLASPAGSLIFSGVIASGIYDYYA  292 (366)
Q Consensus       226 ----------~---~~~l~~~~~l~G~~~g~~~~~~~~~~se~f~~~~~g~~~g~~~~~~~~G~~i~gp~l~G~l~d~~~  292 (366)
                                +   ...+++++++.|++.|+.++..+++++|++++++||.+.++...+..+|..+ ++.+++.+.....
T Consensus       106 ~~~~~~~~~~~~~~~~~l~~~R~l~G~~~g~~~~~~~~~i~e~~~~~~rg~~~~~~~~~~~~G~~~-~~~~~~~~~~~~~  184 (479)
T PRK10077        106 EFGFTSIGPDNTGYVPEFVIYRIIGGIGVGLASMLSPMYIAEIAPAHIRGKLVSFNQFAIIFGQLV-VYFVNYFIARSGD  184 (479)
T ss_pred             ccccccccccchhHHHHHHHHHHHHhhhHhHHhhHHHHHHHhhCChhhhhHHHHHHHHHHHHHHHH-HHHHHHHHhccCc
Confidence                      1   2356788999999999999999999999999999999999999999999886 7766555543221


Q ss_pred             hhhhhhhhhccCCCCCcccCCCCCCcccCCcchHHHHHHHHHHHHHHHHHHHH
Q 017754          293 EKQAGLLWKYNGNMLPVSFRDQETPTCLGSICYSITCGIMAGLCIIAMVMSLI  345 (366)
Q Consensus       293 ~~~~~~~~~~~~~~~~~~~~~~~~~~c~g~~~~~~~f~i~~~~~~~~~~~~~~  345 (366)
                      ..                       . .+...||+.|++.++..++..+..++
T Consensus       185 ~~-----------------------~-~~~~gWr~~f~~~~~~~~~~~~~~~~  213 (479)
T PRK10077        185 AS-----------------------W-LNTDGWRYMFASEAIPALLFLMLLYF  213 (479)
T ss_pred             cc-----------------------c-cccCChHHHHHHHHHHHHHHHHHHHc
Confidence            00                       0 01113999999887777665544333

>PRK09874 drug efflux system protein MdtG; Provisional

Probab=99.38  E-value=1.3e-11  Score=120.85  Aligned_cols=178  Identities=14%  Similarity=0.160  Sum_probs=123.9

Q ss_pred             HHHhhhhhHHHHHHH-HHHhhhhHHHHHhcHHHHHHHhCCChhH------HHHHHHHHHHhhhhhhhhhhhhhhhhhccC
Q 017754          130 PQALMKADFLLLFFS-LVLASGSGLTVIDNLGQICQSLGYADTS------IYVSMISIWNFLGRVGGGYFSEAIVRKFAY  202 (366)
Q Consensus       130 ~~~l~~~~~~ll~~~-~~~~~~~~~~~~~~l~~i~~~~g~s~~~------~~vsl~~i~~~~g~~~~G~lsD~~grr~~~  202 (366)
                      .+.+++++++..++. .++.......+..+++.+..+.+.+...      .+.++..++..++++.+|+++||++||+..
T Consensus       212 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~l~~~~~~~~~g~l~dr~g~~~~~  291 (408)
T PRK09874        212 VTSLKNPKLVLSLFVTTLIIQVATGSIAPILTLYVRELAGNVSNIAFISGMIASVPGVAALLSAPRLGKLGDRIGPEKIL  291 (408)
T ss_pred             HHhCcCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccchhH
Confidence            345566666543322 2222222223445566666664433221      144556678888999999999999987654


Q ss_pred             chhHHHHHHHHHHHHHHHHHH-hhhhHHHHHHHHHHHHHHhhhhhhHHHHHHHhhCCCchhhHHHHHHhhhhhhHHhhhh
Q 017754          203 PRPVAMAVAQVVMAFALLYYA-IGWPGEIYVTTVLVGLSYGAHWAIVPAAASELFGLKSFGALYNFLTLASPAGSLIFSG  281 (366)
Q Consensus       203 ~R~~~~~~~~~~~~~~~~l~~-~~~~~~l~~~~~l~G~~~g~~~~~~~~~~se~f~~~~~g~~~g~~~~~~~~G~~i~gp  281 (366)
                            ..+.++.+++.+.+. ..+...+++..++.|++.+...+...+.+.+..+.+++|..+++.+....+|..+ ||
T Consensus       292 ------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~g~~~-gp  364 (408)
T PRK09874        292 ------ITALIFSVLLLIPMSFVQTPLQLGILRFLLGAADGALLPAVQTLLVYNSSNQIAGRIFSYNQSFRDIGNVT-GP  364 (408)
T ss_pred             ------HHHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhhHhhHHHHHHHHHHhCCcccceeeehHHHHHHHHHHHh-hH
Confidence                  444444444444443 2344556667778899988888888888888888899999999999999999996 99


Q ss_pred             HHHHHHHhhhhhhhhhhhhhccCCCCCcccCCCCCCcccCCcchHHHHHHHHHHHHHHHHHHHHH
Q 017754          282 VIASGIYDYYAEKQAGLLWKYNGNMLPVSFRDQETPTCLGSICYSITCGIMAGLCIIAMVMSLIV  346 (366)
Q Consensus       282 ~l~G~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~g~~~~~~~f~i~~~~~~~~~~~~~~~  346 (366)
                      .++|.+.|..+                                |+..|++.+++.+++++.....
T Consensus       365 ~~~G~l~~~~g--------------------------------~~~~f~~~~~~~l~~~~~~~~~  397 (408)
T PRK09874        365 LMGAAISANYG--------------------------------FRAVFLVTAGVVLFNAVYSWNS  397 (408)
T ss_pred             HHHHHHHhhcc--------------------------------hhHHHHHHHHHHHHHHHHHHHH
Confidence            99999998876                                9999999998888877666543

>TIGR00879 SP MFS transporter, sugar porter (SP) family

Probab=99.37  E-value=1.2e-11  Score=122.48  Aligned_cols=125  Identities=21%  Similarity=0.279  Sum_probs=98.4

Q ss_pred             HHHHhcHHHHHHHhCCC--------hhHH--HHHHHHHHHhhhhhhhhhhhhhhhhhccCchhHHHHHHHHHHHHHHHHH
Q 017754          153 LTVIDNLGQICQSLGYA--------DTSI--YVSMISIWNFLGRVGGGYFSEAIVRKFAYPRPVAMAVAQVVMAFALLYY  222 (366)
Q Consensus       153 ~~~~~~l~~i~~~~g~s--------~~~~--~vsl~~i~~~~g~~~~G~lsD~~grr~~~~R~~~~~~~~~~~~~~~~l~  222 (366)
                      ..+...++.+..+++++        ....  ..+.+.++..++.+++|+++||+|||+.+      .++.++..++.++.
T Consensus        45 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~l~d~~grr~~~------~~~~~~~~~~~~~~  118 (481)
T TIGR00879        45 GVIGGALALPAFEFKFTSANSDSYSSSLWGLVVSIFLVGGFIGALFAGWLSDRFGRKKSL------LIIALLFVIGAILM  118 (481)
T ss_pred             chhhhhhhcHHHHHhcCCcccCCCChhHHHHHHHHHHHHHHHHHHHhhHhhhhhhhHHHH------HHHHHHHHHHHHHH
Confidence            34445567677776665        3433  78889999999999999999999997765      55555556555554


Q ss_pred             Hh-hh---hHHHHHHHHHHHHHHhhhhhhHHHHHHHhhCCCchhhHHHHHHhhhhhhHHhhhhHHH
Q 017754          223 AI-GW---PGEIYVTTVLVGLSYGAHWAIVPAAASELFGLKSFGALYNFLTLASPAGSLIFSGVIA  284 (366)
Q Consensus       223 ~~-~~---~~~l~~~~~l~G~~~g~~~~~~~~~~se~f~~~~~g~~~g~~~~~~~~G~~i~gp~l~  284 (366)
                      .. ..   ...+++++++.|++.+..++...++++|.+++++|+.+.++.+....+|..+ ++.+.
T Consensus       119 ~~~~~~~~~~~~~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~-~~~~~  183 (481)
T TIGR00879       119 GLAAFALSVEMLIVGRVLLGIGVGIASALVPMYLSEIAPKALRGALTSLYQLAITFGILV-AYGFG  183 (481)
T ss_pred             HHhccccchHHHHHHHHHHHhhhhHHHhHHHHHHHccCChhhhhhhhhHHHHHHHHHHHH-HHHHH
Confidence            32 22   2367888999999999999999999999999999999999999999999996 88877

This model represent the sugar porter subfamily of the major facilitator superfamily (pfam00083)

>PRK05122 major facilitator superfamily transporter; Provisional

Probab=99.37  E-value=2.7e-11  Score=118.59  Aligned_cols=149  Identities=13%  Similarity=0.083  Sum_probs=111.4

Q ss_pred             hHHHHHHHHHHhhhhHHHHHhcHHHH-HHHhCCChhHH--HHHHHHHHHhhhhhhhhhhhhhhhhhccCchhHHHHHHHH
Q 017754          137 DFLLLFFSLVLASGSGLTVIDNLGQI-CQSLGYADTSI--YVSMISIWNFLGRVGGGYFSEAIVRKFAYPRPVAMAVAQV  213 (366)
Q Consensus       137 ~~~ll~~~~~~~~~~~~~~~~~l~~i-~~~~g~s~~~~--~vsl~~i~~~~g~~~~G~lsD~~grr~~~~R~~~~~~~~~  213 (366)
                      ++..+.+..+............+|.+ .+++|.+..+.  ..+...++..++.+..|+++||+|||+.+      ..+.+
T Consensus        16 ~~~~l~~~~~~~~~~~~~~~~~l~~~i~~~~g~s~~~~g~~~~~~~~~~~i~~~~~G~l~Dr~g~r~~l------~~~~~   89 (399)
T PRK05122         16 RIVSIVMFTFISYLTIGLPLAVLPGYVHDQLGFSAFLAGLVISLQYLATLLSRPHAGRYADTLGPKKAV------VFGLC   89 (399)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCccHHHHHHHHHHHHHHHHHhchhhHhHHhccCCcchH------HHHHH
Confidence            44445555555544444555667764 56789887765  78888999999999999999999998876      55554


Q ss_pred             HHHHHHHHHH---hh------hhHHHHHHHHHHHHHHhhhhhhHHHHHHHhhCCCchhhHHHHHHhhhhhhHHhhhhHHH
Q 017754          214 VMAFALLYYA---IG------WPGEIYVTTVLVGLSYGAHWAIVPAAASELFGLKSFGALYNFLTLASPAGSLIFSGVIA  284 (366)
Q Consensus       214 ~~~~~~~l~~---~~------~~~~l~~~~~l~G~~~g~~~~~~~~~~se~f~~~~~g~~~g~~~~~~~~G~~i~gp~l~  284 (366)
                      +.+++.+.+.   ..      +...+++.+++.|++.+...+....++.|.++.++|+.+.++...+..+|..+ ||.++
T Consensus        90 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~-g~~l~  168 (399)
T PRK05122         90 GCALSGLLYLLAGLLAAWPVLSLLLLLLGRLLLGIGESLAGTGSILWGIGRVGALHTGRVISWNGIATYGALAI-GAPLG  168 (399)
T ss_pred             HHHHHHHHHHHhhhhhccchhHHHHHHHHHHHHHhhHHhhcchHHHHHHhhcChhhhccchhhhhhhhhHHHHH-HHHHH
Confidence            4444333221   11      12356778899999998888888888899999999999999988888888885 99999


Q ss_pred             HHHHhhhh
Q 017754          285 SGIYDYYA  292 (366)
Q Consensus       285 G~l~d~~~  292 (366)
                      +.+.+..+
T Consensus       169 ~~l~~~~g  176 (399)
T PRK05122        169 VLLYHWGG  176 (399)
T ss_pred             HHHHHccc
Confidence            99988766

>TIGR00897 2A0118 polyol permease family

Probab=99.37  E-value=2.1e-11  Score=120.03  Aligned_cols=148  Identities=11%  Similarity=0.025  Sum_probs=109.1

Q ss_pred             HHHHHHHHHhhhhHHHHHhcHHHHHHHhCCChhHH--HHHHHHHHHhhhhhhhhhhhhhhhhhccCchhHHHHHHHHHHH
Q 017754          139 LLLFFSLVLASGSGLTVIDNLGQICQSLGYADTSI--YVSMISIWNFLGRVGGGYFSEAIVRKFAYPRPVAMAVAQVVMA  216 (366)
Q Consensus       139 ~ll~~~~~~~~~~~~~~~~~l~~i~~~~g~s~~~~--~vsl~~i~~~~g~~~~G~lsD~~grr~~~~R~~~~~~~~~~~~  216 (366)
                      +..+++.++..........+++.+.+++|.+..+.  ..+.+.++..++.++.|+++||+|||+..      ..+.++.+
T Consensus        16 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~i~~~~~g~l~dr~g~k~~l------~~~~~~~~   89 (402)
T TIGR00897        16 LWGYIGVVVFMTGDGLEQGWLSPFLKALGLSPQQSASAFTLYGIAAAISAWISGVVAEIIGPLKTM------MIGLLLWC   89 (402)
T ss_pred             hHHHHHHHHHHHhhhhHHHhHHHHHHHhCCCHHHhHHHHHHHHHHHHHHHHHHHHHHHHcCcHHHH------HHHHHHHH
Confidence            33344444444443344456778889999987765  78899999999999999999999998765      55555555


Q ss_pred             HHHHHH---Hh--hhhHHHHHHHHHHHHHHhhhhhhHHHHHHHhhCCCchhhHHHHHHhhhhhhHHhhhhHHHHHHHhhh
Q 017754          217 FALLYY---AI--GWPGEIYVTTVLVGLSYGAHWAIVPAAASELFGLKSFGALYNFLTLASPAGSLIFSGVIASGIYDYY  291 (366)
Q Consensus       217 ~~~~l~---~~--~~~~~l~~~~~l~G~~~g~~~~~~~~~~se~f~~~~~g~~~g~~~~~~~~G~~i~gp~l~G~l~d~~  291 (366)
                      ++.+++   ..  .+...+++.+++.|++.+.......+.+.+.+++++++++.|+.++..++|..+++|.++|++.+..
T Consensus        90 ~~~~~~~~~~~~~~~~~~l~~~~~i~G~g~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~~g~~~~~~l~~~~  169 (402)
T TIGR00897        90 VGHAAFIVFGLGHANYPLILLFYGIRGLGYPLFAYSFLVWVVYNTKQDNLSSAVGWFWAVYSIGIGVFGSYYSSYAIPAF  169 (402)
T ss_pred             HHHHHHHHHhccCccHHHHHHHHHHHHcchHHHHhHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccc
Confidence            544332   22  2344566778888888877666666778899999999999999999999997434899999988876


Q ss_pred             h
Q 017754          292 A  292 (366)
Q Consensus       292 ~  292 (366)
                      +
T Consensus       170 g  170 (402)
T TIGR00897       170 G  170 (402)
T ss_pred             c
Confidence            5

This family of proteins includes the ribitol and D-arabinitol transporters from Klebsiella pneumoniae and the alpha-ketoglutarate permease from Bacillus subtilis.

>TIGR00887 2A0109 phosphate:H+ symporter

Probab=99.37  E-value=7.8e-12  Score=126.72  Aligned_cols=173  Identities=12%  Similarity=0.047  Sum_probs=108.0

Q ss_pred             hhHHHHHhcHHHHHHHhCCChhH------------H--HHHHHHHHHhhhhhhhhhhhhhhhhhccCchhHHHHHHHHHH
Q 017754          150 GSGLTVIDNLGQICQSLGYADTS------------I--YVSMISIWNFLGRVGGGYFSEAIVRKFAYPRPVAMAVAQVVM  215 (366)
Q Consensus       150 ~~~~~~~~~l~~i~~~~g~s~~~------------~--~vsl~~i~~~~g~~~~G~lsD~~grr~~~~R~~~~~~~~~~~  215 (366)
                      ...++...++|.+.++.|++...            .  ...+..++..+|.+++++++||+|||+..      .++.+++
T Consensus       302 ~~~y~~~~~~p~i~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~g~~~~~~l~dr~gRR~~l------~~~~~~~  375 (502)
T TIGR00887       302 IAFYGVNLNQKVILSAIGYSPPAATNNAYEELYKTAVGNLIIALAGTVPGYWVTVFLVDIIGRKPIQ------LMGFFIL  375 (502)
T ss_pred             HHHHccccccHHHHHHHcCCCCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcchhHH------HHHHHHH
Confidence            34445666789999888886431            1  23344456667889999999999997654      4444444


Q ss_pred             HHHHHHHHhh----h-hHHHHHHHHHHHHHHhhhhhhHHHHHHHhhCCCchhhHHHHHHhhhhhhHHhhhhHHHHHHHhh
Q 017754          216 AFALLYYAIG----W-PGEIYVTTVLVGLSYGAHWAIVPAAASELFGLKSFGALYNFLTLASPAGSLIFSGVIASGIYDY  290 (366)
Q Consensus       216 ~~~~~l~~~~----~-~~~l~~~~~l~G~~~g~~~~~~~~~~se~f~~~~~g~~~g~~~~~~~~G~~i~gp~l~G~l~d~  290 (366)
                      +++.+++...    . ...+....+...++..+..++.+.+.+|+||.+.|+++.|+.+..+.+|+++ +|.+.|++.|.
T Consensus       376 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~~p~~~R~~~~g~~~~~~~~~~~~-~~~~~~~l~~~  454 (502)
T TIGR00887       376 TVLFFVLGFAYNHLSTHGFLAIYVLAQFFANFGPNATTFIVPGEVFPTRYRSTAHGISAASGKAGAII-GQFGFLYLAQH  454 (502)
T ss_pred             HHHHHHHHHHHHhcchhHHHHHHHHHHHHHhcCCCchhhhhhhccCchhHHHHHHHHHHHHhhhHHHH-HHHHhhhhhcc
Confidence            4444333311    1 1111111111222222345567778899999999999999999999999996 99999999986


Q ss_pred             hhhhhhhhhhhccCCCCCcccCCCCCCcccCCcchHHHHHHHHHHHHHHHHHHHHHhhhchH
Q 017754          291 YAEKQAGLLWKYNGNMLPVSFRDQETPTCLGSICYSITCGIMAGLCIIAMVMSLIVVHRTKS  352 (366)
Q Consensus       291 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~g~~~~~~~f~i~~~~~~~~~~~~~~~~~~~r~  352 (366)
                      .+..++.                      ++...+...|++.+++++++.+.. ++.+++++
T Consensus       455 ~~~~~~~----------------------~~~~~~~~~~~i~~~~~~~~~i~~-~~lpEt~~  493 (502)
T TIGR00887       455 GDPTKGY----------------------PTGIWMGHVLEIFALFMFLGILFT-LLIPETKG  493 (502)
T ss_pred             ccccccc----------------------cccccchHHHHHHHHHHHHHHHHh-eEeccCCC
Confidence            4311000                      000015667888888887776654 34456554

This model represents the phosphate uptake symporter subfamily of the major facilitator superfamily (pfam00083).

>cd06174 MFS The Major Facilitator Superfamily (MFS) is a large and diverse group of secondary transporters that includes uniporters, symporters, and antiporters

Probab=99.37  E-value=2.9e-11  Score=114.61  Aligned_cols=170  Identities=22%  Similarity=0.292  Sum_probs=137.1

Q ss_pred             hhHHHHHHHHHHhhhhHHHHHhcHHHHHHHh-CCChhHH--HHHHHHHHHhhhhhhhhhhhhhhhhhc-cCchhHHHHHH
Q 017754          136 ADFLLLFFSLVLASGSGLTVIDNLGQICQSL-GYADTSI--YVSMISIWNFLGRVGGGYFSEAIVRKF-AYPRPVAMAVA  211 (366)
Q Consensus       136 ~~~~ll~~~~~~~~~~~~~~~~~l~~i~~~~-g~s~~~~--~vsl~~i~~~~g~~~~G~lsD~~grr~-~~~R~~~~~~~  211 (366)
                      +.+|.+.+..++.......+..+.|.+.++. |++....  ..+...++..+++++.|+++||++||+ ..      ..+
T Consensus       175 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~------~~~  248 (352)
T cd06174         175 RLLLLLALAFFLLSFGYYGLLTYLPLYLQEVLGLSAAEAGLLLSLFGLGGILGALLGGLLSDRLGRRRLLL------LIG  248 (352)
T ss_pred             HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHH------HHH
Confidence            5566666666666666667778888888775 7777655  778888999999999999999999876 44      566


Q ss_pred             HHHHHHHHHHHHh-hhhHHHHHHHHHHHHHHhhhhhhHHHHHHHhhCCCchhhHHHHHHhhhhhhHHhhhhHHHHHHHhh
Q 017754          212 QVVMAFALLYYAI-GWPGEIYVTTVLVGLSYGAHWAIVPAAASELFGLKSFGALYNFLTLASPAGSLIFSGVIASGIYDY  290 (366)
Q Consensus       212 ~~~~~~~~~l~~~-~~~~~l~~~~~l~G~~~g~~~~~~~~~~se~f~~~~~g~~~g~~~~~~~~G~~i~gp~l~G~l~d~  290 (366)
                      ..+..++.+.+.. .+....++..++.|++.+..++....++.|.++.+++++.+++.+....+|..+ +|.+.|.++|.
T Consensus       249 ~~~~~i~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i-~~~i~g~l~~~  327 (352)
T cd06174         249 LLLAALGLLLLALAPSLALLLVALLLLGFGLGFAFPALLTLASELAPPEARGTASGLFNTFGSLGGAL-GPLLAGLLLDT  327 (352)
T ss_pred             HHHHHHHHHHHHHhccHHHHHHHHHHHHHHHhccchhHHHHHHhhcCHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHhcc
Confidence            6666666666553 335567778888999999999999999999999999999999999999999996 99999999986


Q ss_pred             hhhhhhhhhhhccCCCCCcccCCCCCCcccCCcchHHHHHHHHHHHHHHHHHHH
Q 017754          291 YAEKQAGLLWKYNGNMLPVSFRDQETPTCLGSICYSITCGIMAGLCIIAMVMSL  344 (366)
Q Consensus       291 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~g~~~~~~~f~i~~~~~~~~~~~~~  344 (366)
                      .+                                |+..|++.+++++++.+...
T Consensus       328 ~~--------------------------------~~~~~~~~~~~~~i~~i~~~  349 (352)
T cd06174         328 GG--------------------------------YGGVFLILAALALLAALLLL  349 (352)
T ss_pred             cC--------------------------------cchHHHHHHHHHHHHHHHhe
Confidence            65                                89999998888877766543

MFS proteins facilitate the transport across cytoplasmic or internal membranes of a variety of substrates including ions, sugar phosphates, drugs, neurotransmitters, nucleosides, amino acids, and peptides. They do so using the electrochemical potential of the transported substrates. Uniporters transport a single substrate, while symporters and antiporters transport two substrates in the same or in opposite directions, respectively, across membranes. MFS proteins are typically 400 to 600 amino acids in length, and the majority contain 12 transmembrane alpha helices (TMs) connected by hydrophilic loops. The N- and C-terminal halves of these proteins display weak similarity and may be the result of a gene duplication/fusion event. Based on kinetic studies and the structures of a few bacterial superfamily members, GlpT (glycerol-3

>PRK10489 enterobactin exporter EntS; Provisional

Probab=99.37  E-value=4.1e-11  Score=118.26  Aligned_cols=183  Identities=11%  Similarity=0.036  Sum_probs=128.2

Q ss_pred             HHHhhhhhHHHHHHHHHHhhhhHHHHHhcHHHHHHH-hCCChhHH--HHHHHHHHHhhhhhhhhhhhhhhhhhccCchhH
Q 017754          130 PQALMKADFLLLFFSLVLASGSGLTVIDNLGQICQS-LGYADTSI--YVSMISIWNFLGRVGGGYFSEAIVRKFAYPRPV  206 (366)
Q Consensus       130 ~~~l~~~~~~ll~~~~~~~~~~~~~~~~~l~~i~~~-~g~s~~~~--~vsl~~i~~~~g~~~~G~lsD~~grr~~~~R~~  206 (366)
                      +..++++.++.+++..++... ...+..++|.+.++ +|++....  ..+...++..+|.++.|+++||.++++.     
T Consensus       218 ~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~p~~~~~~~g~~~~~~g~~~~~~~~g~~ig~~~~~~l~~~~~~~~~-----  291 (417)
T PRK10489        218 RFLLASPVVGGIALLGGLLTM-ASAVRVLYPALADEVWQMGAAQIGLLYAAVPLGAALGALTSGWLAHSARPGLL-----  291 (417)
T ss_pred             HHHHcChHHHHHHHHHHHHHH-HHhHHHhhHHHHHhccCCChhHhHHHHHHHHHHHHHHHHHHHHhhhccCcchH-----
Confidence            345567776655544433322 23455678888887 78876554  6677888889999999999987544322     


Q ss_pred             HHHHHHHHHHHHHHHHHh-hhhHHHHHHHHHHHHHHhhhhhhHHHHHHHhhCCCchhhHHHHHHhhhhhhHHhhhhHHHH
Q 017754          207 AMAVAQVVMAFALLYYAI-GWPGEIYVTTVLVGLSYGAHWAIVPAAASELFGLKSFGALYNFLTLASPAGSLIFSGVIAS  285 (366)
Q Consensus       207 ~~~~~~~~~~~~~~l~~~-~~~~~l~~~~~l~G~~~g~~~~~~~~~~se~f~~~~~g~~~g~~~~~~~~G~~i~gp~l~G  285 (366)
                       +..+.++++++.+++.. .+.....++.++.|++.+...+...+++.+.+|.+.+|+++++.+....+|..+ ||.+.|
T Consensus       292 -l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~~-g~~l~G  369 (417)
T PRK10489        292 -MLLSTLGSFLAVGLFGLMPMWILAVLCLALFGYLSAISSLLQYTLLQTQTPDEMLGRINGLWTAQNVTGDAI-GAALLG  369 (417)
T ss_pred             -HHHHHHHHHHHHHHHHccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHhhhHhH-HHHHHH
Confidence             24455555566555543 333445566777888877766777788899999999999999999999999996 999999


Q ss_pred             HHHhhhhhhhhhhhhhccCCCCCcccCCCCCCcccCCcchHHHHHHHHHHHHHHHHHHHHHhhhchH
Q 017754          286 GIYDYYAEKQAGLLWKYNGNMLPVSFRDQETPTCLGSICYSITCGIMAGLCIIAMVMSLIVVHRTKS  352 (366)
Q Consensus       286 ~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~g~~~~~~~f~i~~~~~~~~~~~~~~~~~~~r~  352 (366)
                      ++.|..+                                ++..+++.+++.++..++.....+++|+
T Consensus       370 ~l~~~~g--------------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~  404 (417)
T PRK10489        370 GLGAMMT--------------------------------PVASASASGFGLLIIGVLLLLVLGELRR  404 (417)
T ss_pred             HHHHHhc--------------------------------hhhHHHHHHHHHHHHHHHHHHhcccccc
Confidence            9999877                                7778877776666655555454455443

>TIGR00898 2A0119 cation transport protein

Probab=99.36  E-value=3.2e-11  Score=121.93  Aligned_cols=182  Identities=13%  Similarity=0.096  Sum_probs=120.4

Q ss_pred             CCHHHHhhhhhHHHHHHHHHHhhhhHHHHHhcHHHHHHHhCCChhHHHHHHHHHHHhhhhhhhhhhhhhhhhhccCchhH
Q 017754          127 FTLPQALMKADFLLLFFSLVLASGSGLTVIDNLGQICQSLGYADTSIYVSMISIWNFLGRVGGGYFSEAIVRKFAYPRPV  206 (366)
Q Consensus       127 ~~~~~~l~~~~~~ll~~~~~~~~~~~~~~~~~l~~i~~~~g~s~~~~~vsl~~i~~~~g~~~~G~lsD~~grr~~~~R~~  206 (366)
                      .++++.++++.++...+..++...........++.....++.+.. ....+.++....+.++.++++||+|||+..    
T Consensus       314 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~i~~~~~~~~l~dr~grr~~~----  388 (505)
T TIGR00898       314 YSFLDLFRTPNLRKTTLCLMMLWFTTAFSYYGLVLDLGNLGGNIY-LDLFISGLVELPAKLITLLLIDRLGRRYTM----  388 (505)
T ss_pred             CcHHHHhCChHHHHHHHHHHHHHHHHHHHHHHHhccccccCCChH-HHHHHHHHHHHHHHHHHHHHHHHhCCHHHH----
Confidence            467888888888766554433333222222222333334444432 234455677788999999999999987654    


Q ss_pred             HHHHHHHHHHHHHHHHHh-hhh--HHHHHHHHHHHHHHhhhhhhHHHHHHHhhCCCchhhHHHHHHhhhhhhHHhhhhHH
Q 017754          207 AMAVAQVVMAFALLYYAI-GWP--GEIYVTTVLVGLSYGAHWAIVPAAASELFGLKSFGALYNFLTLASPAGSLIFSGVI  283 (366)
Q Consensus       207 ~~~~~~~~~~~~~~l~~~-~~~--~~l~~~~~l~G~~~g~~~~~~~~~~se~f~~~~~g~~~g~~~~~~~~G~~i~gp~l  283 (366)
                        .+..++.+++.+++.. .+.  ....+..++.+++.+..++..+.+++|.+|++.|+++.|+.++...+|+.+ +|.+
T Consensus       389 --~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~g~~~~~~~ig~~i-~p~i  465 (505)
T TIGR00898       389 --AASLLLAGVALLLLLFVPVDLYFLRTALAVLGKFGITSAFQMVYLYTAELYPTVVRNLGVGVCSTMARVGSII-SPFL  465 (505)
T ss_pred             --HHHHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHHHHHHHHHHhcccccHHHHhhhHhHHHHHHHHHHHH-HhHH
Confidence              5555555655555442 222  334445556667777778888899999999999999999999999999996 9999


Q ss_pred             HHHHHhhhhhhhhhhhhhccCCCCCcccCCCCCCcccCCcchHHHHHHHHHHHHHHHHHHHHHhhhch
Q 017754          284 ASGIYDYYAEKQAGLLWKYNGNMLPVSFRDQETPTCLGSICYSITCGIMAGLCIIAMVMSLIVVHRTK  351 (366)
Q Consensus       284 ~G~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~g~~~~~~~f~i~~~~~~~~~~~~~~~~~~~r  351 (366)
                      .+ + +..+                                +...+.+.+++++++.++.+++ +++|
T Consensus       466 ~~-~-~~~~--------------------------------~~~~~~~~~~~~~~~~~~~~~l-pet~  498 (505)
T TIGR00898       466 VY-L-GEKW--------------------------------LFLPLVLFGGLALLAGILTLFL-PETK  498 (505)
T ss_pred             HH-H-HHHH--------------------------------HhhHHHHHHHHHHHHHHHHHcC-cCCC
Confidence            88 3 3333                                5667777777777776665544 4444

>KOG2532 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism]

Probab=99.36  E-value=1.4e-11  Score=123.25  Aligned_cols=192  Identities=12%  Similarity=0.086  Sum_probs=142.4

Q ss_pred             CCCCHHHHhhhhhHHHHHHHHHHhhhhHHHHHhcHHHHHHH-hCCChhHH--HHHHHHHHHhhhhhhhhhhhhhhhhhcc
Q 017754          125 EDFTLPQALMKADFLLLFFSLVLASGSGLTVIDNLGQICQS-LGYADTSI--YVSMISIWNFLGRVGGGYFSEAIVRKFA  201 (366)
Q Consensus       125 ~~~~~~~~l~~~~~~ll~~~~~~~~~~~~~~~~~l~~i~~~-~g~s~~~~--~vsl~~i~~~~g~~~~G~lsD~~grr~~  201 (366)
                      .+.++++.++++.+|.++++.++.......+..++|.+.++ +|++..+.  +.+++.+...+..+++|.++||+-+| .
T Consensus       247 ~~vP~~~i~ts~~vwai~~~~f~~~~~~~~l~~y~PtY~~~VL~f~v~~~G~~salP~l~~~~~k~~~g~lsD~l~~~-~  325 (466)
T KOG2532|consen  247 PPVPYKAILTSPPVWAIWISAFGGNWGFYLLLTYLPTYLKEVLGFDVRETGFLSALPFLAMAIVKFVAGQLSDRLTFR-I  325 (466)
T ss_pred             CCCCHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhCCChhhhhHHHHHHHHHHHHHHHHHHHHHHHHhhc-c
Confidence            45689999999999999999999999999999999999976 78876655  88899999999999999999999876 3


Q ss_pred             C----chhHHHHHHHHHHHHHHHHHHhhh--hHHHHHHHHHHHHHHhhhhhhHHHHHHHhhCCCchhhHHHHHHhhhhhh
Q 017754          202 Y----PRPVAMAVAQVVMAFALLYYAIGW--PGEIYVTTVLVGLSYGAHWAIVPAAASELFGLKSFGALYNFLTLASPAG  275 (366)
Q Consensus       202 ~----~R~~~~~~~~~~~~~~~~l~~~~~--~~~l~~~~~l~G~~~g~~~~~~~~~~se~f~~~~~g~~~g~~~~~~~~G  275 (366)
                      .    .|+.+-.+++...++.++.++...  ...+.+.....+.+..+..............+++.+..+|+.+....+.
T Consensus       326 ls~t~~rkifn~i~~~~~ai~l~~l~~~~~~~~~~a~~~l~~~~~~~g~~~~Gf~~~~~~~apq~a~~l~g~~~~~~~~~  405 (466)
T KOG2532|consen  326 LSETTVRKIFNTIAFGGPAVFLLVLAFTSDEHRLLAVILLTIAIGLSGFNISGFYKNHQDIAPQHAGFVMGIINFVGALA  405 (466)
T ss_pred             CchHhHHHHHHhHHHHHHHHHHHeeeecCCCcchHHHHHHHHHHHHcccchhhhHhhhhhccchHHHHHHHHHHHHHHHH
Confidence            3    377788888888888877766332  2212222222223322222222222222226889999999999999999


Q ss_pred             HHhhhhHHHHHHHhhhhhhhhhhhhhccCCCCCcccCCCCCCcccCCcchHHHHHHHHHHHHHHHHHHHHHh
Q 017754          276 SLIFSGVIASGIYDYYAEKQAGLLWKYNGNMLPVSFRDQETPTCLGSICYSITCGIMAGLCIIAMVMSLIVV  347 (366)
Q Consensus       276 ~~i~gp~l~G~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~g~~~~~~~f~i~~~~~~~~~~~~~~~~  347 (366)
                      +++ +|.+.|.+..... +.                            .|+..|++.+++.+++.+...++.
T Consensus       406 ~~~-~P~~vg~~~~~~t-~~----------------------------eW~~VF~i~a~i~~~~~i~f~~f~  447 (466)
T KOG2532|consen  406 GFI-APLLVGIIVTDNT-RE----------------------------EWRIVFLIAAGILIVGNIIFLFFG  447 (466)
T ss_pred             HHH-HHHheeeEeCCCC-HH----------------------------HHHHHHHHHHHHHHHhchheeEee
Confidence            996 9999999984211 11                            299999999999988886655543

>PRK10642 proline/glycine betaine transporter; Provisional

Probab=99.35  E-value=5.2e-11  Score=120.38  Aligned_cols=144  Identities=13%  Similarity=0.021  Sum_probs=106.8

Q ss_pred             HHHHHHHHHHhhhhHHHHHhcHHHHHHHhCC--ChhH--H----HHHHHHHHHhhhhhhhhhhhhhhhhhccCchhHHHH
Q 017754          138 FLLLFFSLVLASGSGLTVIDNLGQICQSLGY--ADTS--I----YVSMISIWNFLGRVGGGYFSEAIVRKFAYPRPVAMA  209 (366)
Q Consensus       138 ~~ll~~~~~~~~~~~~~~~~~l~~i~~~~g~--s~~~--~----~vsl~~i~~~~g~~~~G~lsD~~grr~~~~R~~~~~  209 (366)
                      ++..+++.++-......+....|.+.+++..  +...  .    ..++..++..+|.++.|+++||+|||+.+      .
T Consensus        18 ~~~~~~g~~~~~~d~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ig~~~~G~l~Dr~Grr~~l------~   91 (490)
T PRK10642         18 ITAASLGNAMEWFDFGVYGFVAYALGKVFFPGADPSVQMIAALATFSVPFLIRPLGGLFFGMLGDKYGRQKIL------A   91 (490)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccHHHH------H
Confidence            3444555555555555666677878777743  2221  1    13556677889999999999999998876      7


Q ss_pred             HHHHHHHHHHHHHHhh-hhH--------HHHHHHHHHHHHHhhhhhhHHHHHHHhhCCCchhhHHHHHHhhhhhhHHhhh
Q 017754          210 VAQVVMAFALLYYAIG-WPG--------EIYVTTVLVGLSYGAHWAIVPAAASELFGLKSFGALYNFLTLASPAGSLIFS  280 (366)
Q Consensus       210 ~~~~~~~~~~~l~~~~-~~~--------~l~~~~~l~G~~~g~~~~~~~~~~se~f~~~~~g~~~g~~~~~~~~G~~i~g  280 (366)
                      ++.++++++.++.+.. +..        .+++++++.|++.|+.++...++++|++|.++||...++...+..+|..+ |
T Consensus        92 ~~~~l~~i~~~~~a~~~~~~~~g~~a~~~l~~~R~l~G~g~g~~~~~~~~~~~e~~p~~~Rg~~~~~~~~~~~~G~~l-g  170 (490)
T PRK10642         92 ITIVIMSISTFCIGLIPSYATIGIWAPILLLLCKMAQGFSVGGEYTGASIFVAEYSPDRKRGFMGSWLDFGSIAGFVL-G  170 (490)
T ss_pred             HHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHhHhHhhHHHHHHHHHHhCCCCCCcHHHHHHHHHHHHHHHH-H
Confidence            7777777777776633 322        36788999999999999999999999999999999999988888888775 7


Q ss_pred             hHHHHHHH
Q 017754          281 GVIASGIY  288 (366)
Q Consensus       281 p~l~G~l~  288 (366)
                      +.+...+.
T Consensus       171 ~~~~~~~~  178 (490)
T PRK10642        171 AGVVVLIS  178 (490)
T ss_pred             HHHHHHHH
Confidence            66555443

>TIGR02718 sider_RhtX_FptX siderophore transporter, RhtX/FptX family

Probab=99.35  E-value=7.7e-11  Score=115.28  Aligned_cols=175  Identities=14%  Similarity=0.070  Sum_probs=121.3

Q ss_pred             CHHHHhhhhhHHHHHHHHHHhhhhHHHHHhcHHHHHHHhCCChhHH--HHHHHH-HHHhhhhhhhhhhhhhhhhhccCch
Q 017754          128 TLPQALMKADFLLLFFSLVLASGSGLTVIDNLGQICQSLGYADTSI--YVSMIS-IWNFLGRVGGGYFSEAIVRKFAYPR  204 (366)
Q Consensus       128 ~~~~~l~~~~~~ll~~~~~~~~~~~~~~~~~l~~i~~~~g~s~~~~--~vsl~~-i~~~~g~~~~G~lsD~~grr~~~~R  204 (366)
                      ++++.+|++.+|......++..........+.+.+.++.|++..++  ...... +...+|.+++|++.||+++|+..  
T Consensus       200 ~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~~G~s~~~ig~~~~~~~~~~~~~g~~~~g~l~~r~g~~~~l--  277 (390)
T TIGR02718       200 SLFRFFRRPLAWSLLALALLSAMTAVSGFGLSKLYLVDAGWPLEWIGRLGMAGGAVTVLLGCGGGAWLVRRAGLWRTF--  277 (390)
T ss_pred             HHHHHHcCcCHHHHHHHHHHHHHHHHHHHHHhhHHHHhcCCCHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhhHHHHH--
Confidence            3567888888887776666665555555567778888899998776  344443 45667889999999999987654  


Q ss_pred             hHHHHHHHHHHHHHHHH-HHh------hhhHHHHHHHHHHHHHHhhhhhhHHHHHHHhhCC-CchhhHHHHHHhhhhhhH
Q 017754          205 PVAMAVAQVVMAFALLY-YAI------GWPGEIYVTTVLVGLSYGAHWAIVPAAASELFGL-KSFGALYNFLTLASPAGS  276 (366)
Q Consensus       205 ~~~~~~~~~~~~~~~~l-~~~------~~~~~l~~~~~l~G~~~g~~~~~~~~~~se~f~~-~~~g~~~g~~~~~~~~G~  276 (366)
                          ..+.++.++..+. +..      .....++...++.+++.|..++...+...+..++ +++|+.+++.+....+|.
T Consensus       278 ----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~lg~  353 (390)
T TIGR02718       278 ----ILGVGLAGSLALLWFAQAAFWLAPGIAVAWSCSAFGSLITGITSVAIYTAFMRFAGDGDQAGTDVTAVQSTRDLGE  353 (390)
T ss_pred             ----HHHHHHHHHHHHHHHHHHHcccCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcccchHHHHHHHHHHHHHHH
Confidence                3333322121111 111      1112233333445666777777777777777776 789999999999999999


Q ss_pred             HhhhhHHHHHHHhhhhhhhhhhhhhccCCCCCcccCCCCCCcccCCcchHHHHHHHHHHHHHHHH
Q 017754          277 LIFSGVIASGIYDYYAEKQAGLLWKYNGNMLPVSFRDQETPTCLGSICYSITCGIMAGLCIIAMV  341 (366)
Q Consensus       277 ~i~gp~l~G~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~g~~~~~~~f~i~~~~~~~~~~  341 (366)
                      .+ ||.++|+++|..+                                |+..|++.+++.+++.+
T Consensus       354 ~~-g~~~~G~l~~~~G--------------------------------~~~~f~~~~~~~l~a~~  385 (390)
T TIGR02718       354 LI-ASSIAGYLTDRFG--------------------------------YAGGFLSGTVLAVLAIL  385 (390)
T ss_pred             HH-HHHHHHHHHHHHc--------------------------------cHHHHHHHHHHHHHHHH
Confidence            96 9999999999887                                88888887766666543

RhtX from Sinorhizobium meliloti 2011 and FptX from Pseudomonas aeruginosa appear to be single polypeptide transporters, from the major facilitator family (see pfam07690) for import of siderophores as a means to import iron. This function was suggested by proximity to siderophore biosynthesis genes and then confirmed by study of knockout and heterologous expression phenotypes.

>PRK03633 putative MFS family transporter protein; Provisional

Probab=99.35  E-value=5.3e-11  Score=116.15  Aligned_cols=149  Identities=15%  Similarity=0.098  Sum_probs=122.5

Q ss_pred             hhhHHHHHHHHHHhhhhHHHHHhcHHHHHHHhCCChhHH--HHHHHHHHHhhhhhhhhhhhhhhhhhccCchhHHHHHHH
Q 017754          135 KADFLLLFFSLVLASGSGLTVIDNLGQICQSLGYADTSI--YVSMISIWNFLGRVGGGYFSEAIVRKFAYPRPVAMAVAQ  212 (366)
Q Consensus       135 ~~~~~ll~~~~~~~~~~~~~~~~~l~~i~~~~g~s~~~~--~vsl~~i~~~~g~~~~G~lsD~~grr~~~~R~~~~~~~~  212 (366)
                      ++++|+++.+.++...........+|.+.+++|.+..++  ..+...++..++++..|+++||+|||+..      ..+.
T Consensus         5 ~~~~~~~~~~~~~~~~~~~~~~~~lp~~~~~~~~s~~~~G~~~s~~~l~~~~~~~~~g~l~dr~g~k~~~------~~~~   78 (381)
T PRK03633          5 TRPVLLLLCGLLLLTLAIAVLNTLVPLWLAQEHLPTWQVGVVSSSYFTGNLVGTLLAGYVIKRIGFNRSY------YLAS   78 (381)
T ss_pred             HHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHH------HHHH
Confidence            445888887777777666667788999999999987666  88888999999999999999999998766      5566


Q ss_pred             HHHHHHHHHHH-hhhhHHHHHHHHHHHHHHhhhhhhHHHHHHHhhCCCchhhHHHHHHhhhhhhHHhhhhHHHHHHHhh
Q 017754          213 VVMAFALLYYA-IGWPGEIYVTTVLVGLSYGAHWAIVPAAASELFGLKSFGALYNFLTLASPAGSLIFSGVIASGIYDY  290 (366)
Q Consensus       213 ~~~~~~~~l~~-~~~~~~l~~~~~l~G~~~g~~~~~~~~~~se~f~~~~~g~~~g~~~~~~~~G~~i~gp~l~G~l~d~  290 (366)
                      ++.+++.++.. ..+...+++++++.|++.+..++.....+.+.++.++++.+++.......+|..+ ||.+.+.+.+.
T Consensus        79 ~~~~~~~~~~~~~~~~~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~-g~~~~~~l~~~  156 (381)
T PRK03633         79 LIFAAGCAGLGLMVGFWSWLAWRFVAGIGCAMIWVVVESALMCSGTSRNRGRLLAAYMMVYYLGTVL-GQLLVSKVSTE  156 (381)
T ss_pred             HHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHH-HHHHHhccccc
Confidence            66666666555 3455677888999999998887777777788888899999999999999999996 99999988664

>PRK12307 putative sialic acid transporter; Provisional

Probab=99.35  E-value=5.8e-11  Score=117.19  Aligned_cols=158  Identities=13%  Similarity=0.147  Sum_probs=108.0

Q ss_pred             CHHHHhhhhhHHHHHHHH---HHhhhhHHHHHhcHHHHHHHhCCChhHH--HHHHHHHHHhhhhhhhhhhhhhhhhhccC
Q 017754          128 TLPQALMKADFLLLFFSL---VLASGSGLTVIDNLGQICQSLGYADTSI--YVSMISIWNFLGRVGGGYFSEAIVRKFAY  202 (366)
Q Consensus       128 ~~~~~l~~~~~~ll~~~~---~~~~~~~~~~~~~l~~i~~~~g~s~~~~--~vsl~~i~~~~g~~~~G~lsD~~grr~~~  202 (366)
                      ++++.++++.++.....+   ++..+....+..++|.+.++.|++....  ..++..++..++++++|+++||++||+..
T Consensus       220 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~g~~~~g~l~dr~~~~~~~  299 (426)
T PRK12307        220 SMKGLFNRAQFPLTLCVFIVLFSIFGANWPIFGLLPTYLAGEGFDTGVVSNLMTAAAFGTVLGNIVWGLCADRIGLKKTF  299 (426)
T ss_pred             HHHHHHhhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHH
Confidence            466778888777543322   2222333345678899988889876654  67778889999999999999999987544


Q ss_pred             chhHHHHHHHHHHHHHHHHHH-hhhhHHHHHHHHHHHHHH--hhhhhhHHHHHHHhhCCCchhhHHHHHHhhhhhhHHhh
Q 017754          203 PRPVAMAVAQVVMAFALLYYA-IGWPGEIYVTTVLVGLSY--GAHWAIVPAAASELFGLKSFGALYNFLTLASPAGSLIF  279 (366)
Q Consensus       203 ~R~~~~~~~~~~~~~~~~l~~-~~~~~~l~~~~~l~G~~~--g~~~~~~~~~~se~f~~~~~g~~~g~~~~~~~~G~~i~  279 (366)
                            ..+.++.++..+++. ........+..+++|++.  .+..++.+..+.|.+|.+.+|++.|+.+....+|+.+ 
T Consensus       300 ------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~~~~~-  372 (426)
T PRK12307        300 ------SIGLLMSFLFIFPLFRIPQDNYLLLGACLFGLMATNVGVGGLVPKFLYDYFPLEVRGLGTGLIYNLAATSGTF-  372 (426)
T ss_pred             ------HHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHhcccHhHHHHHHHHHhCcHHHHhhhhhHHHHHHhHHHHH-
Confidence                  344444433333322 222222223333444332  3344667788899999999999999999999999995 


Q ss_pred             hhHHHHHHHhhhh
Q 017754          280 SGVIASGIYDYYA  292 (366)
Q Consensus       280 gp~l~G~l~d~~~  292 (366)
                      +|.+.|++.|..+
T Consensus       373 gp~~~g~l~~~~g  385 (426)
T PRK12307        373 NSMAATWLGITMG  385 (426)
T ss_pred             HHHHHHHHHHccc
Confidence            9999999998876

>TIGR00792 gph sugar (Glycoside-Pentoside-Hexuronide) transporter

Probab=99.34  E-value=1.4e-10  Score=114.86  Aligned_cols=157  Identities=15%  Similarity=0.140  Sum_probs=109.9

Q ss_pred             HHHHhhhhhHHHHHHHHHHhhhhHHHHHhcHHHHHHH-hCCChhHH-HHHHHHHHHhhhhhhhhhhhhhhhhhccCchhH
Q 017754          129 LPQALMKADFLLLFFSLVLASGSGLTVIDNLGQICQS-LGYADTSI-YVSMISIWNFLGRVGGGYFSEAIVRKFAYPRPV  206 (366)
Q Consensus       129 ~~~~l~~~~~~ll~~~~~~~~~~~~~~~~~l~~i~~~-~g~s~~~~-~vsl~~i~~~~g~~~~G~lsD~~grr~~~~R~~  206 (366)
                      +++.++++.+|.+.+..++............+++.+. ++.+.... +.++..++..++.+++|+++||+++|+..    
T Consensus       215 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ii~~~~~~~l~~r~g~~~~~----  290 (437)
T TIGR00792       215 FKALFKNDQLLILCLAYLFYNLAFNIKNGVQVYYFTYVLGDPELFSYMGSIAIVAGLIGVLLFPRLVKKFGRKILF----  290 (437)
T ss_pred             HHHHhCCHHHHHHHHHHHHHHHHHHHHcchhheeEeeecCChHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcHHHH----
Confidence            4566778888877766665554444443444444433 33222222 56667888899999999999999987654    


Q ss_pred             HHHHHHHHHHHHHHHHHh--hhhHHHHHHHHHHHHHHhhhhhhHHHHHHHhhC-------CCchhhHHHHHHhhhhhhHH
Q 017754          207 AMAVAQVVMAFALLYYAI--GWPGEIYVTTVLVGLSYGAHWAIVPAAASELFG-------LKSFGALYNFLTLASPAGSL  277 (366)
Q Consensus       207 ~~~~~~~~~~~~~~l~~~--~~~~~l~~~~~l~G~~~g~~~~~~~~~~se~f~-------~~~~g~~~g~~~~~~~~G~~  277 (366)
                        ..+.++++++.+++..  .+...+++..++.|++.+...+..+++++|..+       .+..|..+|+.+....+|..
T Consensus       291 --~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~~~~g~~  368 (437)
T TIGR00792       291 --AGGILLMVLGYLIFFFAGSNLPLILVLIILAGFGQNFVTGLVWALVADTVDYGEWKTGVRAEGLVYSVRTFVRKLGQA  368 (437)
T ss_pred             --HHHHHHHHHHHHHHHHcchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhcCccchHHHHHHHHHHHHHHHH
Confidence              4555555555554432  223345566677888888888888888888754       56689999999999999999


Q ss_pred             hhhhHHHHHHHhhhh
Q 017754          278 IFSGVIASGIYDYYA  292 (366)
Q Consensus       278 i~gp~l~G~l~d~~~  292 (366)
                      + ++.+.|++.|..|
T Consensus       369 l-g~~i~g~ll~~~G  382 (437)
T TIGR00792       369 L-AGFLVGLILGIIG  382 (437)
T ss_pred             H-HHHHHHHHHHHcC
Confidence            6 9999999998765

GPH:cation symporters catalyze uptake of sugars in symport with a monovalent cation (H+ or Na+). Members of this family includes transporters for melibiose, lactose, raffinose, glucuronides, pentosides and isoprimeverose. Mutants of two groups of these symporters (the melibiose permeases of enteric bacteria, and the lactose permease of Streptococcus thermophilus) have been isolated in which altered cation specificity is observed or in which sugar transport is uncoupled from cation symport (i.e., uniport is catalyzed). The various members of the family can use Na+, H+ or Li, Na+ or Li+, H+ or Li+, or only H+ as the symported cation. All of these proteins possess twelve putative transmembrane a-helical spanners.

>PRK15034 nitrate/nitrite transport protein NarU; Provisional

Probab=99.34  E-value=6e-11  Score=118.30  Aligned_cols=187  Identities=12%  Similarity=0.127  Sum_probs=128.8

Q ss_pred             hhhHHHHHHHHHHhhhhHHHHHhcHHHHHH-HhCCChhHH--HHHHHHHHHhhhhhhhhhhhhhhhhhccCchhHHHHHH
Q 017754          135 KADFLLLFFSLVLASGSGLTVIDNLGQICQ-SLGYADTSI--YVSMISIWNFLGRVGGGYFSEAIVRKFAYPRPVAMAVA  211 (366)
Q Consensus       135 ~~~~~ll~~~~~~~~~~~~~~~~~l~~i~~-~~g~s~~~~--~vsl~~i~~~~g~~~~G~lsD~~grr~~~~R~~~~~~~  211 (366)
                      ++.+|+.+++++.+...........+.+.+ ++|++.++.  ..+++.+...++|+..|++.||+|.|+..      .++
T Consensus        33 ~r~l~~s~~~f~~~F~~w~~~~~l~~~~~~~~~~ls~~q~g~l~ai~~l~~al~rip~G~l~Dr~G~R~v~------~~~  106 (462)
T PRK15034         33 RRNLWISVSCLLLAFCVWMLFSAVTVNLNKIGFNFTTDQLFLLTALPSVSGALLRVPYSFMVPIFGGRRWT------VFS  106 (462)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCChHHH------HHH
Confidence            345777777777666666666666677766 799998776  78889999999999999999999987655      555


Q ss_pred             HHHHHHHHHHHHh------hhhHHHHHHHHHHHHHHhhhhhhHHHHHHHhhCCCchhhHHHHHHhhhhhhHHh---hhhH
Q 017754          212 QVVMAFALLYYAI------GWPGEIYVTTVLVGLSYGAHWAIVPAAASELFGLKSFGALYNFLTLASPAGSLI---FSGV  282 (366)
Q Consensus       212 ~~~~~~~~~l~~~------~~~~~l~~~~~l~G~~~g~~~~~~~~~~se~f~~~~~g~~~g~~~~~~~~G~~i---~gp~  282 (366)
                      .++.++..++.+.      ++...+++..++.|++ |+.++.....++++|+++++|++.|+....+++|..+   +.|.
T Consensus       107 ~ll~~i~~~~~~~a~~~~~~s~~~lli~r~l~Gig-g~~f~~~~~~vs~wfp~~~rG~A~Gi~~g~G~~G~~l~~~l~p~  185 (462)
T PRK15034        107 TAILIIPCVWLGIAVQNPNTPFGIFIVIALLCGFA-GANFASSMGNISFFFPKAKQGSALGINGGLGNLGVSVMQLVAPL  185 (462)
T ss_pred             HHHHHHHHHHHHHHHcccCCCHHHHHHHHHHHHHH-HHhHHHHHHHHHHHCCHhHhHHHHHHHHHHHhhHHHHHHHHHHH
Confidence            5555565555543      3556788889999997 6778888889999999999999999996555666653   1343


Q ss_pred             HHH-HHHhhhhhhhhhhhhhccCCCCCcccCCCCCCccc-CCcchHHHHHHHHHHHHHHHHHHHHHhh
Q 017754          283 IAS-GIYDYYAEKQAGLLWKYNGNMLPVSFRDQETPTCL-GSICYSITCGIMAGLCIIAMVMSLIVVH  348 (366)
Q Consensus       283 l~G-~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~-g~~~~~~~f~i~~~~~~~~~~~~~~~~~  348 (366)
                      +.+ .+++..+.+..                .    .-. +...|+.++++...+.+++.++.+++..
T Consensus       186 ~i~~~l~~~~G~~~~----------------~----~~~g~~~~~~~~~~~~~~~~iv~~i~~~~~~~  233 (462)
T PRK15034        186 VIFVPVFAFLGVNGV----------------P----QADGSVMSLANAAWIWVPLLAIATIAAWSGMN  233 (462)
T ss_pred             HHHHHHHHHhccccc----------------c----ccccchHHHHHHHHHHHHHHHHHHHHHHHhCC
Confidence            332 23333331000                0    000 1223888888888877777766665533

>TIGR00896 CynX cyanate transporter

Probab=99.34  E-value=4.6e-11  Score=115.23  Aligned_cols=159  Identities=12%  Similarity=0.029  Sum_probs=116.0

Q ss_pred             CHHHHhhhhhHHHHHHHHHHhhhhHHHHHhcHHHHHHHhCCChhHH--HHHHHHHHHhhhhhhhhhhhhhhhhhccCchh
Q 017754          128 TLPQALMKADFLLLFFSLVLASGSGLTVIDNLGQICQSLGYADTSI--YVSMISIWNFLGRVGGGYFSEAIVRKFAYPRP  205 (366)
Q Consensus       128 ~~~~~l~~~~~~ll~~~~~~~~~~~~~~~~~l~~i~~~~g~s~~~~--~vsl~~i~~~~g~~~~G~lsD~~grr~~~~R~  205 (366)
                      ..++.++++.+|.+.+..++..........++|.+.++.|++....  ..++..++..+++++.|+++||+++|+..   
T Consensus       189 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lp~~~~~~g~~~~~~g~~~~~~~~~~i~~~~~~g~l~dr~~~~~~~---  265 (355)
T TIGR00896       189 TPVRIWRSPLAWQVTVFFGLQSGLYYSLIGWLPAILISHGASAATAGSLLALMQLAQAASALLIPALARRVKDQRGI---  265 (355)
T ss_pred             CCchhhcCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHhHHHHHhhhccchHH---
Confidence            4567788899998776666655666667788999999889887654  78888999999999999999999543221   


Q ss_pred             HHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHhhhhhhHHHHHHHhhCC-CchhhHHHHHHhhhhhhHHhhhhHHH
Q 017754          206 VAMAVAQVVMAFALLYYAIGWPGEIYVTTVLVGLSYGAHWAIVPAAASELFGL-KSFGALYNFLTLASPAGSLIFSGVIA  284 (366)
Q Consensus       206 ~~~~~~~~~~~~~~~l~~~~~~~~l~~~~~l~G~~~g~~~~~~~~~~se~f~~-~~~g~~~g~~~~~~~~G~~i~gp~l~  284 (366)
                        +.++.++++++.+.+............++.|++.|..++...+.+.+..+. ++++..+++.+....+|..+ +|.+.
T Consensus       266 --~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~g~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~-gp~~~  342 (355)
T TIGR00896       266 --VAVLAVLQLVGLCGLLFAPMHGLWAWALVLGLGQGGAFPLALTLIGLRSRQAAQAAALSAMAQSIGYLLAAL-GPLFV  342 (355)
T ss_pred             --HHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHhhhhHhHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHHHH-HHHHH
Confidence              234444555554444322211222345678999988888877777666654 55788899988888888885 99999


Q ss_pred             HHHHhhhh
Q 017754          285 SGIYDYYA  292 (366)
Q Consensus       285 G~l~d~~~  292 (366)
                      |++.|..+
T Consensus       343 G~l~~~~g  350 (355)
T TIGR00896       343 GVLHDISG  350 (355)
T ss_pred             HHHHHHhc
Confidence            99999886

This family of proteins is involved in active transport of cyanate. The cyanate transporter in E.Coli is used to transport cyanate into the cell so it can be metabolized into ammonia and bicarbonate. This process is used to overcome the toxicity of environmental cyanate.

>KOG1330 consensus Sugar transporter/spinster transmembrane protein [Carbohydrate transport and metabolism]

Probab=99.33  E-value=1.1e-12  Score=127.29  Aligned_cols=176  Identities=15%  Similarity=0.189  Sum_probs=143.8

Q ss_pred             HHHHHHHHHhhhhHHHHHhcHHHHHHHhCCChhHH--HHHHHHHHHhhhhhhhhhhhhhhhhhccCchhHHHHHHHHHHH
Q 017754          139 LLLFFSLVLASGSGLTVIDNLGQICQSLGYADTSI--YVSMISIWNFLGRVGGGYFSEAIVRKFAYPRPVAMAVAQVVMA  216 (366)
Q Consensus       139 ~ll~~~~~~~~~~~~~~~~~l~~i~~~~g~s~~~~--~vsl~~i~~~~g~~~~G~lsD~~grr~~~~R~~~~~~~~~~~~  216 (366)
                      .++++...+....-+++...++.+.+.++.+++..  +.+.+.+...+..|+.|++.||+.||+.+      +++..+-.
T Consensus        36 ~il~~vnlmny~Dr~~iagv~~~v~~~fni~~s~~Gll~~vf~v~~~i~sPl~gyLadryNR~~v~------~vG~~iW~  109 (493)
T KOG1330|consen   36 VILCLVNLMNYADRYTIAGVLKEVQTYFNISDSELGLLQTVFIVVFMIASPLFGYLADRYNRKRVI------AVGIFIWT  109 (493)
T ss_pred             HHHHHHHHHHHhhhhhhhhhhHHHHHhcCCCchhccchhHHHHHHHHHHHHHHHHHHhhcCcceEE------eeHHHHHH
Confidence            34455555666666777777888888888887665  77888888999999999999999999887      66666666


Q ss_pred             HHHHHHHh-hhhHHHHHHHHHHHHHHhhhhhhHHHHHHHhhCCCchhhHHHHHHhhhhhhHHhhhhHHHHHHHhhhhhhh
Q 017754          217 FALLYYAI-GWPGEIYVTTVLVGLSYGAHWAIVPAAASELFGLKSFGALYNFLTLASPAGSLIFSGVIASGIYDYYAEKQ  295 (366)
Q Consensus       217 ~~~~l~~~-~~~~~l~~~~~l~G~~~g~~~~~~~~~~se~f~~~~~g~~~g~~~~~~~~G~~i~gp~l~G~l~d~~~~~~  295 (366)
                      ++.+...+ .+.+.+.+++.++|+|-+...++.+++++|.|+...|+..+++++++.++|+.+ |-++++.+.+.+.   
T Consensus       110 ~Av~~~~fs~~Fwq~~l~R~~vGiGeAs~~~ia~s~IaD~f~~~~Rs~~~~ify~~ipvGsgl-G~vvgs~va~~~~---  185 (493)
T KOG1330|consen  110 LAVFASGFSNHFWQVLLCRGFVGIGEASYSPIAPSLIADSFPDDKRSRVLGIFYFAIPVGSGL-GYVVGSVVASLTF---  185 (493)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhccchhhhcccchhHhhhcCcchhhhHHHHHhhhhcccccce-eEEeeeeeccCcc---
Confidence            66655553 445678889999999999999999999999999999999999999999999995 8777777777766   


Q ss_pred             hhhhhhccCCCCCcccCCCCCCcccCCcchHHHHHHHHHHHHHHHHHHHHHhhhchH
Q 017754          296 AGLLWKYNGNMLPVSFRDQETPTCLGSICYSITCGIMAGLCIIAMVMSLIVVHRTKS  352 (366)
Q Consensus       296 ~~~~~~~~~~~~~~~~~~~~~~~c~g~~~~~~~f~i~~~~~~~~~~~~~~~~~~~r~  352 (366)
                                                  .||++|++.+++.++.+++..++.++.++
T Consensus       186 ----------------------------~Wr~af~~~avl~vi~~~L~~~f~~eP~r  214 (493)
T KOG1330|consen  186 ----------------------------WWRWAFRGSAVLGVIVGLLVFLFVREPER  214 (493)
T ss_pred             ----------------------------ceEEEEEeehHHHHHHHHHHHhhccCccc
Confidence                                        49999999999999988888777665443

>PRK10077 xylE D-xylose transporter XylE; Provisional

Probab=99.33  E-value=6e-11  Score=118.92  Aligned_cols=159  Identities=14%  Similarity=0.137  Sum_probs=109.8

Q ss_pred             HHhcHHHHHHHhCCChhHH--HHHHHHHHHhhhhhhhhhhhhhhhhhccCchhHHHHHHHHHHHHHHHHHHhh---h-hH
Q 017754          155 VIDNLGQICQSLGYADTSI--YVSMISIWNFLGRVGGGYFSEAIVRKFAYPRPVAMAVAQVVMAFALLYYAIG---W-PG  228 (366)
Q Consensus       155 ~~~~l~~i~~~~g~s~~~~--~vsl~~i~~~~g~~~~G~lsD~~grr~~~~R~~~~~~~~~~~~~~~~l~~~~---~-~~  228 (366)
                      ...+.|.+.++.|++....  ......+.+.++.+++|+++||++||+..      ..+.++++++.+++...   + ..
T Consensus       290 ~~~~~p~i~~~~g~~~~~~~~~~~~~~~~~~i~~~~~g~l~dr~g~r~~~------i~~~~~~~v~~~~l~~~~~~~~~~  363 (479)
T PRK10077        290 VLYYAPEIFKTLGASTDIALLQTIIVGVINLTFTVLAIMTVDKFGRKPLQ------IIGALGMAIGMFSLGTAFYTQAPG  363 (479)
T ss_pred             HHHHHHHHHHHcCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHhcChHHH------HHhHHHHHHHHHHHHHHHhcCccc
Confidence            4456788888889876533  55567788899999999999999987654      55555666655554321   1 11


Q ss_pred             -HHHHHHHHHHHHHhhhh-hhHHHHHHHhhCCCchhhHHHHHHhhhhhhHHhhhhHHHHHHH------hhhhhhhhhhhh
Q 017754          229 -EIYVTTVLVGLSYGAHW-AIVPAAASELFGLKSFGALYNFLTLASPAGSLIFSGVIASGIY------DYYAEKQAGLLW  300 (366)
Q Consensus       229 -~l~~~~~l~G~~~g~~~-~~~~~~~se~f~~~~~g~~~g~~~~~~~~G~~i~gp~l~G~l~------d~~~~~~~~~~~  300 (366)
                       ....+.++++++.+..+ +..+.+++|.+|.+.|+++.|+.+....+|..+ ++.+.+.+.      |..+        
T Consensus       364 ~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~g~~~~~~~~g~~~-~~~~~p~~~~~~~~~~~~~--------  434 (479)
T PRK10077        364 IVALLSMLFYVAAFAMSWGPVCWVLLSEIFPNAIRGKALAIAVAAQWIANYF-VSWTFPMMDKNSWLVAHFH--------  434 (479)
T ss_pred             HHHHHHHHHHHHHHhccccchhHHHhHhhCChhHHHHHHHHHHHHHHHHHHH-HHHHhHHHHhccchhhhcc--------
Confidence             22233444444444323 567789999999999999999999998888886 766665444      3332        


Q ss_pred             hccCCCCCcccCCCCCCcccCCcchHHHHHHHHHHHHHHHHHHHHHhhhchH
Q 017754          301 KYNGNMLPVSFRDQETPTCLGSICYSITCGIMAGLCIIAMVMSLIVVHRTKS  352 (366)
Q Consensus       301 ~~~~~~~~~~~~~~~~~~c~g~~~~~~~f~i~~~~~~~~~~~~~~~~~~~r~  352 (366)
                                              ++..|++.++++++++++.+.+.+++|+
T Consensus       435 ------------------------~~~~~~~~~~~~~~~~~~~~~~~~e~~~  462 (479)
T PRK10077        435 ------------------------NGFSYWIYGCMGVLAALFMWKFVPETKG  462 (479)
T ss_pred             ------------------------CccHHHHHHHHHHHHHHHHHhccccCCC
Confidence                                    6778888888878777777666666554

>PF11700 ATG22: Vacuole effluxer Atg22 like; InterPro: IPR024671 Autophagy is a major survival mechanism in which eukaryotes recycle cellular nutrients during stress conditions

Probab=99.32  E-value=1.7e-10  Score=115.94  Aligned_cols=183  Identities=17%  Similarity=0.230  Sum_probs=138.3

Q ss_pred             HHHHhhhhhHHHHHHHHHHhhhhHHHHHhcHHHHHH-HhCCChhHH--HHHHHHHHHhhhhhhhhhhhhhhhhhccCchh
Q 017754          129 LPQALMKADFLLLFFSLVLASGSGLTVIDNLGQICQ-SLGYADTSI--YVSMISIWNFLGRVGGGYFSEAIVRKFAYPRP  205 (366)
Q Consensus       129 ~~~~l~~~~~~ll~~~~~~~~~~~~~~~~~l~~i~~-~~g~s~~~~--~vsl~~i~~~~g~~~~G~lsD~~grr~~~~R~  205 (366)
                      ++++.+.++.+.+++++++..-...+++.....+.+ .+|++..+.  +.-+..+.+++|.+++|++.||+|.|..  |.
T Consensus       274 ~k~~~~~~~~~~fLia~~l~~dg~~ti~~~~~i~a~~~lg~s~~~l~~~~l~~~i~a~~Ga~~~g~l~~r~g~k~~--~~  351 (477)
T PF11700_consen  274 FKEIRKLRQLFLFLIAYFLYSDGVNTIISFAGIYATEVLGMSTTQLIVFGLVVQIVAIIGALLFGWLQDRFGPKTK--RT  351 (477)
T ss_pred             HHHHHhChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchh--HH
Confidence            444555677777777777765555556565666665 689998876  6667788999999999999999998722  11


Q ss_pred             HHHHHHHHHHHHHHHHHH--------hhhhHHHHHHHHHHHHHHhhhhhhHHHHHHHhhCCCchhhHHHHHHhhhhhhHH
Q 017754          206 VAMAVAQVVMAFALLYYA--------IGWPGEIYVTTVLVGLSYGAHWAIVPAAASELFGLKSFGALYNFLTLASPAGSL  277 (366)
Q Consensus       206 ~~~~~~~~~~~~~~~l~~--------~~~~~~l~~~~~l~G~~~g~~~~~~~~~~se~f~~~~~g~~~g~~~~~~~~G~~  277 (366)
                      +.+.+.. ...++...+.        ..+.+.+++..++.|++.|+.++..-++.+++.|+.+.+..+|+..+.....+.
T Consensus       352 l~~~l~~-~~~i~~~g~~G~~~~~~g~~~~~~f~~~a~~~G~~~G~~qs~sRs~~~~LiP~g~e~efFgly~i~gk~ss~  430 (477)
T PF11700_consen  352 LLISLIL-WIIIPLYGLFGFWPSFFGLKSPWEFWVLAVLIGLFMGGIQSASRSLFSRLIPPGREAEFFGLYAITGKASSW  430 (477)
T ss_pred             HHHHHHH-HHHHHHHHHHHhhhcccCcccHHHHHHHHHHHHHHhhhHHHHHHHHHHHhCCCchhhHHHHHHHHHHHHHHH
Confidence            1112211 1122222222        445667889999999999999999999999999999999999999999999999


Q ss_pred             hhhhHHHHHHHhhhhhhhhhhhhhccCCCCCcccCCCCCCcccCCcchHHHHHHHHHHHHHHHHHHHHH
Q 017754          278 IFSGVIASGIYDYYAEKQAGLLWKYNGNMLPVSFRDQETPTCLGSICYSITCGIMAGLCIIAMVMSLIV  346 (366)
Q Consensus       278 i~gp~l~G~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~g~~~~~~~f~i~~~~~~~~~~~~~~~  346 (366)
                      + ||.+.|.+.|.++                               +.|..+..+.++.+++.++...+
T Consensus       431 l-GPll~g~i~~~tg-------------------------------~~r~g~~~l~~lf~~gl~ll~~v  467 (477)
T PF11700_consen  431 L-GPLLFGLITDATG-------------------------------SQRYGFLFLLVLFLIGLILLFFV  467 (477)
T ss_pred             H-HHHHHHHHHHHhC-------------------------------CchhHHHHHHHHHHHHHHHHhhc
Confidence            6 9999999999997                               37888888888888877766544

Atg22, Avt3 and Avt4 are partially redundant vacuolar effluxers, which mediate the efflux of leucine and other amino acids resulting from autophagy []. This family also includes other transporter proteins.

>PRK10406 alpha-ketoglutarate transporter; Provisional

Probab=99.32  E-value=1.3e-10  Score=115.38  Aligned_cols=137  Identities=15%  Similarity=0.065  Sum_probs=98.4

Q ss_pred             HHHHhhhhHHHHHhcHHHHHHHhC---CChhHH-----HHHHHHHHHhhhhhhhhhhhhhhhhhccCchhHHHHHHHHHH
Q 017754          144 SLVLASGSGLTVIDNLGQICQSLG---YADTSI-----YVSMISIWNFLGRVGGGYFSEAIVRKFAYPRPVAMAVAQVVM  215 (366)
Q Consensus       144 ~~~~~~~~~~~~~~~l~~i~~~~g---~s~~~~-----~vsl~~i~~~~g~~~~G~lsD~~grr~~~~R~~~~~~~~~~~  215 (366)
                      +.++-......+....|.+.++++   .+..+.     ..+...++..+|.+++|+++||+|||+.+      ..+.+++
T Consensus        30 ~~~~~~~d~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ig~~~~G~l~Dr~Grr~~l------~~~~~~~  103 (432)
T PRK10406         30 GNLVEWFDFYVYSFCSLYFAHIFFPSGNTTTQLLQTAGVFAAGFLMRPIGGWLFGRIADKHGRKKSM------LISVCMM  103 (432)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHH------HHHHHHH
Confidence            344444444455556677778874   333321     34444555668899999999999998876      6677777


Q ss_pred             HHHHHHHHh-hh--------hHHHHHHHHHHHHHHhhhhhhHHHHHHHhhCCCchhhHHHHHHhhhhhhHHhhhhHHHHH
Q 017754          216 AFALLYYAI-GW--------PGEIYVTTVLVGLSYGAHWAIVPAAASELFGLKSFGALYNFLTLASPAGSLIFSGVIASG  286 (366)
Q Consensus       216 ~~~~~l~~~-~~--------~~~l~~~~~l~G~~~g~~~~~~~~~~se~f~~~~~g~~~g~~~~~~~~G~~i~gp~l~G~  286 (366)
                      +++.++.+. ++        +..+++++++.|++.|+.++...++++|.+|+++||...++.......|..+ ++.+...
T Consensus       104 ~~~~~~~~~~~~~~~~~~~~~~~l~~~R~l~G~g~g~~~~~~~~~i~e~~p~~~rg~~~~~~~~~~~~G~~~-~~~~~~~  182 (432)
T PRK10406        104 CFGSLVIACLPGYETIGTWAPALLLLARLFQGLSVGGEYGTSATYMSEVAVEGRKGFYASFQYVTLIGGQLL-ALLVVVV  182 (432)
T ss_pred             HHHHHHHhhcCCchhHHHHHHHHHHHHHHHHHhhhhhhHhhHHHHHHHhCCCCcccHHHHHHHHHHHHHHHH-HHHHHHH
Confidence            766666543 22        2357889999999999999999999999999999999999888777777774 6655444


Q ss_pred             H
Q 017754          287 I  287 (366)
Q Consensus       287 l  287 (366)
                      +
T Consensus       183 ~  183 (432)
T PRK10406        183 L  183 (432)
T ss_pred             H
Confidence            4

>PRK11128 putative 3-phenylpropionic acid transporter; Provisional

Probab=99.32  E-value=1.9e-10  Score=112.27  Aligned_cols=158  Identities=11%  Similarity=-0.003  Sum_probs=115.2

Q ss_pred             CCHHHHhhhhhHHHHHHHHHHhhhhHHHHHhcHHHHHHHhCCChhHH--HHHHHHHHHhhhhhhhhhhhhhhhhhccCch
Q 017754          127 FTLPQALMKADFLLLFFSLVLASGSGLTVIDNLGQICQSLGYADTSI--YVSMISIWNFLGRVGGGYFSEAIVRKFAYPR  204 (366)
Q Consensus       127 ~~~~~~l~~~~~~ll~~~~~~~~~~~~~~~~~l~~i~~~~g~s~~~~--~vsl~~i~~~~g~~~~G~lsD~~grr~~~~R  204 (366)
                      .++++.++++.+|.+.+..++.......+...+|.+.++.|++....  ..++..+...++.++.|++.||+++|+..  
T Consensus       196 ~~~~~i~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~~r~~~~~~l--  273 (382)
T PRK11128        196 PAWKALLKEPTVWRFLLCVSLLQGSHAAYYGFSAIYWQAAGYSASTIGYLWSLGVVAEVLIFAFSNRLFRRWSARDLL--  273 (382)
T ss_pred             chHHHHHcChhHHHHHHHHHHHHHHhHhHHHHHHHHHHHCCCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHH--
Confidence            35788999999998776666555555556667788888889886654  55666677777888888898998876554  


Q ss_pred             hHHHHHHHHHHHHHHHHHH-hhhhHHHHHHHHHHHHHHhhhhhhHHHHHHHhhCCCchhhHHHHHH-hhhhhhHHhhhhH
Q 017754          205 PVAMAVAQVVMAFALLYYA-IGWPGEIYVTTVLVGLSYGAHWAIVPAAASELFGLKSFGALYNFLT-LASPAGSLIFSGV  282 (366)
Q Consensus       205 ~~~~~~~~~~~~~~~~l~~-~~~~~~l~~~~~l~G~~~g~~~~~~~~~~se~f~~~~~g~~~g~~~-~~~~~G~~i~gp~  282 (366)
                          ..+.++.+++.+++. ..++..+++..++.|++.+...+....++.+. +.+++++..+..+ ....+|..+ ||.
T Consensus       274 ----~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~g~~i-g~~  347 (382)
T PRK11128        274 ----LLSAICGVVRWGLMGSTTALPWLIVIQILHCGTFTVCHLAAMRYIAAR-PGSEVIRLQALYSALAMGGSIAI-MTV  347 (382)
T ss_pred             ----HHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHC-CHhhhHHHHHHHHHHHHHHHHHH-HHH
Confidence                556666666665555 34455667778888998887766666676775 5566788888876 445667675 999


Q ss_pred             HHHHHHhhhh
Q 017754          283 IASGIYDYYA  292 (366)
Q Consensus       283 l~G~l~d~~~  292 (366)
                      ++|.++|..+
T Consensus       348 i~G~l~~~~g  357 (382)
T PRK11128        348 LSGFLYQHLG  357 (382)
T ss_pred             HHHHHHHhcc
Confidence            9999999886

>TIGR01272 gluP glucose/galactose transporter

Probab=99.31  E-value=1.8e-10  Score=109.75  Aligned_cols=153  Identities=13%  Similarity=0.098  Sum_probs=114.1

Q ss_pred             HHhhhhhHHHHHHHHHHhhhhHHHHHhcHHHHHHH---hCCChhHH--HHHHHHHHHhhhhhhhhhhhhhhhhhccCchh
Q 017754          131 QALMKADFLLLFFSLVLASGSGLTVIDNLGQICQS---LGYADTSI--YVSMISIWNFLGRVGGGYFSEAIVRKFAYPRP  205 (366)
Q Consensus       131 ~~l~~~~~~ll~~~~~~~~~~~~~~~~~l~~i~~~---~g~s~~~~--~vsl~~i~~~~g~~~~G~lsD~~grr~~~~R~  205 (366)
                      ..++++.+|+..++.++..+...++.+|++.+.++   +|++....  ..+.+..+..+||++.++++||+++|+..   
T Consensus       135 ~~~~~~~~~l~~~~~f~yvg~e~~~~~w~~~yl~~~~~~g~s~~~a~~~~s~~~~~~~iGr~~~~~l~~r~g~~~~l---  211 (310)
T TIGR01272       135 SAFQFTHLVLGALGIFVYVGAEVSAGSFLVNFLSDPHALGLPEDQAAHFTAYTWGGAMVGRFIGSAVMPMISQGRYL---  211 (310)
T ss_pred             hHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCHHHHH---
Confidence            46678889988888888888888889999999975   47776554  78888899999999999999999876544   


Q ss_pred             HHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHhhhhhhHHHHHHHhhCCCchhhHHHHHHhhhhhhHHhhhhHHHH
Q 017754          206 VAMAVAQVVMAFALLYYAIGWPGEIYVTTVLVGLSYGAHWAIVPAAASELFGLKSFGALYNFLTLASPAGSLIFSGVIAS  285 (366)
Q Consensus       206 ~~~~~~~~~~~~~~~l~~~~~~~~l~~~~~l~G~~~g~~~~~~~~~~se~f~~~~~g~~~g~~~~~~~~G~~i~gp~l~G  285 (366)
                         .++.++.+++.+++...+.....++.+++|++.+..++...+...+.++.+ .+++.++. ....+|+.+ .|.+.|
T Consensus       212 ---~~~~~l~~~~~~l~~~~~~~~~~~~~~l~g~~~s~i~P~~~s~a~~~~~~~-~~~asai~-~~~~~Gg~i-~P~l~G  285 (310)
T TIGR01272       212 ---AFNAFLAVLLSIGAALTHGYVAMWFVLALGLFNSIMFPTIFSLALNALGRH-TSQGSGIL-CLAIVGGAI-VPLLQG  285 (310)
T ss_pred             ---HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhh-hhhhHHHH-HHHHhcchH-HHHHHH
Confidence               344444444443333322232344666789999999999888888888653 45566665 456688886 899999


Q ss_pred             HHHhhhh
Q 017754          286 GIYDYYA  292 (366)
Q Consensus       286 ~l~d~~~  292 (366)
                      .+.|..+
T Consensus       286 ~lad~~g  292 (310)
T TIGR01272       286 SLADCLG  292 (310)
T ss_pred             HHHHhcc
Confidence            9999876

Disruption of the loci leads to the total loss of glucose or galactose uptake in E.coli. Putative transporters in other bacterial species were isolated by functional complementation, which restored it functional activity.

>TIGR00894 2A0114euk Na(+)-dependent inorganic phosphate cotransporter

Probab=99.31  E-value=1.9e-11  Score=122.47  Aligned_cols=144  Identities=11%  Similarity=0.096  Sum_probs=115.7

Q ss_pred             HhCCChhHH--HHHHHHHHHhhhhhhhhhhhhhhhhhccCchhHHHHHHHHHHHHHHHHHHh---hhhHHHHHHHHHHHH
Q 017754          165 SLGYADTSI--YVSMISIWNFLGRVGGGYFSEAIVRKFAYPRPVAMAVAQVVMAFALLYYAI---GWPGEIYVTTVLVGL  239 (366)
Q Consensus       165 ~~g~s~~~~--~vsl~~i~~~~g~~~~G~lsD~~grr~~~~R~~~~~~~~~~~~~~~~l~~~---~~~~~l~~~~~l~G~  239 (366)
                      +++++....  +.+.+.++..++.+.+|+++||+|+|+..      ..+.++.+++.++...   .+...+++.+++.|+
T Consensus        70 ~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~g~r~~l------~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~~~G~  143 (465)
T TIGR00894        70 NFKWSGALQGLILSSHFYGQIIIQIPVGYLAGKYVFKWSI------GIGMFLSSVISIVIPWAAGGGIALVVFCRVIQGL  143 (465)
T ss_pred             CCCCCHHHhhHHHHHHHHHHHHHHcchHHHHHHhCcchhh------HHHHHHHHHHHHHHHHHHHcCchHHHHHHHHHHH
Confidence            566766554  78888999999999999999999998766      5555555555444321   223467788999999


Q ss_pred             HHhhhhhhHHHHHHHhhCCCchhhHHHHHHhhhhhhHHhhhhHHHHHHHhhh-hhhhhhhhhhccCCCCCcccCCCCCCc
Q 017754          240 SYGAHWAIVPAAASELFGLKSFGALYNFLTLASPAGSLIFSGVIASGIYDYY-AEKQAGLLWKYNGNMLPVSFRDQETPT  318 (366)
Q Consensus       240 ~~g~~~~~~~~~~se~f~~~~~g~~~g~~~~~~~~G~~i~gp~l~G~l~d~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~  318 (366)
                      +.+..++....+++|+++.++|+.+.++...+..+|..+ +|++.+++.+.. +                          
T Consensus       144 ~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~i-~~~l~~~l~~~~~g--------------------------  196 (465)
T TIGR00894       144 AQGSVSPATHKIIVKWAPPKERSRLLGMSTSGFQLGTFI-FLPISGWLCESWGG--------------------------  196 (465)
T ss_pred             hcccchhhHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHhccCC--------------------------
Confidence            999999999999999999999999999999999999996 999999998874 5                          


Q ss_pred             ccCCcchHHHHHHHHHHHHHHHHHHHHHh
Q 017754          319 CLGSICYSITCGIMAGLCIIAMVMSLIVV  347 (366)
Q Consensus       319 c~g~~~~~~~f~i~~~~~~~~~~~~~~~~  347 (366)
                            |+..|++.++..++..++.+.+.
T Consensus       197 ------w~~~f~i~~~~~~~~~~~~~~~~  219 (465)
T TIGR00894       197 ------WPMIFYVFGIVGCAWSLLWFVFP  219 (465)
T ss_pred             ------CCeehhhhhHHHHHHHHHHHHHh
Confidence                  99999998887766655554443

>TIGR00880 2_A_01_02 Multidrug resistance protein

Probab=99.31  E-value=3.2e-11  Score=98.91  Aligned_cols=131  Identities=11%  Similarity=0.169  Sum_probs=104.2

Q ss_pred             HHHHHHhhhhhhhhhhhhhhhhhccCchhHHHHHHHHHHHHHHHHHH-hhhhHHHHHHHHHHHHHHhhhhhhHHHHHHHh
Q 017754          177 MISIWNFLGRVGGGYFSEAIVRKFAYPRPVAMAVAQVVMAFALLYYA-IGWPGEIYVTTVLVGLSYGAHWAIVPAAASEL  255 (366)
Q Consensus       177 l~~i~~~~g~~~~G~lsD~~grr~~~~R~~~~~~~~~~~~~~~~l~~-~~~~~~l~~~~~l~G~~~g~~~~~~~~~~se~  255 (366)
                      ...++..++.+..|++.||++||+..      ..+..+..++.+++. ..+...+.+..++.|++.+...+.....+.|.
T Consensus         6 ~~~~~~~~~~~~~g~~~d~~g~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~   79 (141)
T TIGR00880         6 GYALGQLIYSPLSGLLTDRFGRKPVL------LVGLFIFVLSTAMFALSSNITVLIIARFLQGFGAAFALVAGAALIADI   79 (141)
T ss_pred             eehhHHHHHHhhHHHHHhhcchhHHH------HHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHhHHHHHHHH
Confidence            45677888999999999999987654      445555555554444 34445667778889999998888999999999


Q ss_pred             hCCCchhhHHHHHHhhhhhhHHhhhhHHHHHHHhhhhhhhhhhhhhccCCCCCcccCCCCCCcccCCcchHHHHHHHHHH
Q 017754          256 FGLKSFGALYNFLTLASPAGSLIFSGVIASGIYDYYAEKQAGLLWKYNGNMLPVSFRDQETPTCLGSICYSITCGIMAGL  335 (366)
Q Consensus       256 f~~~~~g~~~g~~~~~~~~G~~i~gp~l~G~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~g~~~~~~~f~i~~~~  335 (366)
                      ++.++++...++.+....+|..+ +|.+.|.+.+..+                                |++.|++.+.+
T Consensus        80 ~~~~~~~~~~~~~~~~~~~g~~~-~~~~~~~~~~~~~--------------------------------~~~~~~~~~~~  126 (141)
T TIGR00880        80 YPPEERGVALGLMSAGIALGPLL-GPPLGGVLAQFLG--------------------------------WRAPFLFLAIL  126 (141)
T ss_pred             CChhhhhHHHHHHHHhHHHHHHH-hHHhHHHHhcccc--------------------------------hHHHHHHHHHH
Confidence            99999999999999999999996 9999999987765                                89999888877


Q ss_pred             HHHHHHHHHHH
Q 017754          336 CIIAMVMSLIV  346 (366)
Q Consensus       336 ~~~~~~~~~~~  346 (366)
                      ++++.+....+
T Consensus       127 ~~~~~~~~~~~  137 (141)
T TIGR00880       127 ALAAFILLAFL  137 (141)
T ss_pred             HHHHHHHHhhc
Confidence            77766655544

>PRK15011 sugar efflux transporter B; Provisional

Probab=99.30  E-value=3e-10  Score=111.42  Aligned_cols=156  Identities=17%  Similarity=0.133  Sum_probs=107.6

Q ss_pred             hhhHHHHHhcHHHHHH-HhCCChhHH--HHHHHHHHHhhhhhhhhhhhhhhhhhccCchhHHHHHHHHHHHHHHHHHH-h
Q 017754          149 SGSGLTVIDNLGQICQ-SLGYADTSI--YVSMISIWNFLGRVGGGYFSEAIVRKFAYPRPVAMAVAQVVMAFALLYYA-I  224 (366)
Q Consensus       149 ~~~~~~~~~~l~~i~~-~~g~s~~~~--~vsl~~i~~~~g~~~~G~lsD~~grr~~~~R~~~~~~~~~~~~~~~~l~~-~  224 (366)
                      ......+..++|.+.+ ++|++....  +.+...+...++++++|+++||++||+..      ..+.+...+...... .
T Consensus       229 ~~~~~~~~~~~p~~l~~~~~~~~~~~g~~~~~~~~~~i~~~~~~G~l~dr~g~~~~~------~~~~~~~~~~~~~~~~~  302 (393)
T PRK15011        229 WGTNSLYIINMPLFIINELHLPEKLAGVMMGTAAGLEIPTMLIAGYFAKRLGKRFLM------RVAAVAGVCFYAGMLMA  302 (393)
T ss_pred             HHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhChHHHH------HHHHHHHHHHHHHHHHH
Confidence            3333445567887764 578887654  55566677788999999999999987543      222222222222222 2


Q ss_pred             hhhHHHHHHHHHHHHHHhhhhhhHHHHHHHhhCCCchhhHHHHHHhhhhhhHHhhhhHHHHHHHhhhhhhhhhhhhhccC
Q 017754          225 GWPGEIYVTTVLVGLSYGAHWAIVPAAASELFGLKSFGALYNFLTLASPAGSLIFSGVIASGIYDYYAEKQAGLLWKYNG  304 (366)
Q Consensus       225 ~~~~~l~~~~~l~G~~~g~~~~~~~~~~se~f~~~~~g~~~g~~~~~~~~G~~i~gp~l~G~l~d~~~~~~~~~~~~~~~  304 (366)
                      .++..+++..++.+++.|...+..+....|.+|. ++|++.++.+....+|..+ +|.++|.++|..+            
T Consensus       303 ~~~~~~l~~~~l~~~~~g~~~~~~~~~~~~~~p~-~~g~~~~~~~~~~~lg~~~-g~~l~G~i~~~~g------------  368 (393)
T PRK15011        303 HSPAILLGLQLLNAIYIGILGGIGMLYFQDLMPG-QAGSATTLYTNTSRVGWII-AGSLAGIVAEIWN------------  368 (393)
T ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCC-CcchHHHHHHHHHHHHHHH-HHHHHHHHHHHhh------------
Confidence            3344445555666666666666667778898875 5899999998888999996 9999999999876            


Q ss_pred             CCCCcccCCCCCCcccCCcchHHHHHHHHHHHHHHHHHHH
Q 017754          305 NMLPVSFRDQETPTCLGSICYSITCGIMAGLCIIAMVMSL  344 (366)
Q Consensus       305 ~~~~~~~~~~~~~~c~g~~~~~~~f~i~~~~~~~~~~~~~  344 (366)
                                          |+..|++.+++++++.++.+
T Consensus       369 --------------------~~~~~~~~~~~~~~~~~~~~  388 (393)
T PRK15011        369 --------------------YHAVFWFALVMIIATLFCLL  388 (393)
T ss_pred             --------------------hHHHHHHHHHHHHHHHHHHH
Confidence                                99999887777766655544

>PRK09952 shikimate transporter; Provisional

Probab=99.30  E-value=3.6e-10  Score=112.63  Aligned_cols=146  Identities=16%  Similarity=0.039  Sum_probs=101.0

Q ss_pred             hHHHHHHHHHHhhhhHHHHHhcHHHH-HHHh--CCChhHHHH------HHHHHHHhhhhhhhhhhhhhhhhhccCchhHH
Q 017754          137 DFLLLFFSLVLASGSGLTVIDNLGQI-CQSL--GYADTSIYV------SMISIWNFLGRVGGGYFSEAIVRKFAYPRPVA  207 (366)
Q Consensus       137 ~~~ll~~~~~~~~~~~~~~~~~l~~i-~~~~--g~s~~~~~v------sl~~i~~~~g~~~~G~lsD~~grr~~~~R~~~  207 (366)
                      .++..++.+++-......+....|.+ .+++  +.++.....      ++..++..+|.++.|+++||+|||+.+     
T Consensus        23 ~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~G~l~Dr~Grr~~l-----   97 (438)
T PRK09952         23 AALGSFAGAVVDWYDFLLYGITAALVFNREFFPQVSPAMGTLAAFATFGVGFLFRPLGGVVFGHFGDRLGRKRML-----   97 (438)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHhhccHHHH-----
Confidence            34444455555444444444444433 3443  455443211      233455667888899999999998766     


Q ss_pred             HHHHHHHHHHHHHHHHhh-hhH--------HHHHHHHHHHHHHhhhhhhHHHHHHHhhCCCchhhHHHHHHhhhhhhHHh
Q 017754          208 MAVAQVVMAFALLYYAIG-WPG--------EIYVTTVLVGLSYGAHWAIVPAAASELFGLKSFGALYNFLTLASPAGSLI  278 (366)
Q Consensus       208 ~~~~~~~~~~~~~l~~~~-~~~--------~l~~~~~l~G~~~g~~~~~~~~~~se~f~~~~~g~~~g~~~~~~~~G~~i  278 (366)
                       ..+.++.+++.++.+.. +..        .+++++++.|++.|+.++....+++|.+|.++||...+....+..+|..+
T Consensus        98 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~R~l~G~~~g~~~~~~~~~~~e~~p~~~rg~~~~~~~~g~~~G~~l  176 (438)
T PRK09952         98 -MLTVWMMGIATALIGLLPSFSTIGWWAPVLLVTLRAIQGFAVGGEWGGAALLAVESAPKNKKAFYSSGVQVGYGVGLLL  176 (438)
T ss_pred             -HHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHHHHhhhcccHHHHHHHHHHhCCCCCCcHHHHHHHHHHHHHHHH
Confidence             66777777777666533 222        46778999999999999988899999999999999999999888888885


Q ss_pred             hhhHHHHHHHh
Q 017754          279 FSGVIASGIYD  289 (366)
Q Consensus       279 ~gp~l~G~l~d  289 (366)
                       ++.+.+.+..
T Consensus       177 -~~~~~~~l~~  186 (438)
T PRK09952        177 -STGLVSLISM  186 (438)
T ss_pred             -HHHHHHHHHH
Confidence             7766666653

>TIGR00885 fucP L-fucose:H+ symporter permease

Probab=99.30  E-value=2.6e-10  Score=112.84  Aligned_cols=146  Identities=13%  Similarity=0.001  Sum_probs=116.0

Q ss_pred             HHHHHHHHHHhhhhHHHHHhcHHHHHHHhCCChhHH--HHHHHHHHHhhhhhhhhhhhhhhhhhccCchhHHHHHHHHHH
Q 017754          138 FLLLFFSLVLASGSGLTVIDNLGQICQSLGYADTSI--YVSMISIWNFLGRVGGGYFSEAIVRKFAYPRPVAMAVAQVVM  215 (366)
Q Consensus       138 ~~ll~~~~~~~~~~~~~~~~~l~~i~~~~g~s~~~~--~vsl~~i~~~~g~~~~G~lsD~~grr~~~~R~~~~~~~~~~~  215 (366)
                      ++++...++............+|++.+++|.+..+.  ..+...++..++.+..|++.||+|||+..      ..+.+++
T Consensus         5 ~~~~~~~f~~~G~~~~~~~~l~~~~~~~~~~s~~~~g~l~s~~~~g~~i~~~~~g~l~~r~G~r~~~------~~g~~l~   78 (410)
T TIGR00885         5 FALITSLFALWGFANDITNPMVPQFQQAFTLTAFQAALVQSAFYGGYFIMAIPAAIFMKKLSYKAGI------LLGLFLY   78 (410)
T ss_pred             HHHHHHHHHHHHHHHHhHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCchHHH------HHHHHHH
Confidence            555555554444443344467788889999988766  78888899999999999999999998766      7777788


Q ss_pred             HHHHHHHHh----hhhHHHHHHHHHHHHHHhhhhhhHHHHHHHhhCCCchhhHHHHHHhhhhhhHHhhhhHHHHHHHhh
Q 017754          216 AFALLYYAI----GWPGEIYVTTVLVGLSYGAHWAIVPAAASELFGLKSFGALYNFLTLASPAGSLIFSGVIASGIYDY  290 (366)
Q Consensus       216 ~~~~~l~~~----~~~~~l~~~~~l~G~~~g~~~~~~~~~~se~f~~~~~g~~~g~~~~~~~~G~~i~gp~l~G~l~d~  290 (366)
                      +++.+++..    .+...+++..++.|+|.|...+...+++.+..++++++...++.+....+|+.+ ||.+++.+...
T Consensus        79 ~~g~~l~~~~~~~~~~~~~l~~~~l~G~g~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lG~~~-g~~i~~~l~~~  156 (410)
T TIGR00885        79 ALGAFLFWPAAEIMNYTLFLVGLFILTAGLGFLETAANPYILVMGPESTATRRLNLAQSFNPFGSII-GMVVAQQLILS  156 (410)
T ss_pred             HHHHHHHHHHHhhccHHHHHHHHHHHHhhHHHHHhhhhHHHHHHCCHhHHHHHHHHHHHHHHHHHHH-HHHHHHHHHhc
Confidence            877766532    234566778889999999998888889999998899999999999999999996 99999888643

This family describes the L-fucose permease in bacteria. L-fucose(6-deoxy-L-galactose) is a monosaccharide found in glycoproteins and cell wall polysaccharides. L-fucose is used in bacteria through an inducible pathway mediated by atleast four enzymes: a permease, isomerase, kinase and an aldolase which are encoded by fucP, fucI, fucK, fucA respectively. The fuc genes belong to a regulon comprising of four linked operons: fucO, fucA, fucPIK and fucR. The positive regulator is encoded by fucR, whose protein responds to fuculose-1-phosphate, which acts as an effector.

>TIGR00882 2A0105 oligosaccharide:H+ symporter

Probab=99.30  E-value=2.1e-10  Score=112.49  Aligned_cols=179  Identities=11%  Similarity=0.111  Sum_probs=127.7

Q ss_pred             CHHHHhhhhhHHHHHHHHHHhhhhHHHHHhcHHHHHHHh----CCChhHH--HHHHHHHHHhhhhhhhhhhhhhhhhhcc
Q 017754          128 TLPQALMKADFLLLFFSLVLASGSGLTVIDNLGQICQSL----GYADTSI--YVSMISIWNFLGRVGGGYFSEAIVRKFA  201 (366)
Q Consensus       128 ~~~~~l~~~~~~ll~~~~~~~~~~~~~~~~~l~~i~~~~----g~s~~~~--~vsl~~i~~~~g~~~~G~lsD~~grr~~  201 (366)
                      +.++.++++++|.+.+..++..........+.+.+.++.    +.+....  ..++..+...++.+..|++.||+++|+.
T Consensus       207 ~~~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~g~~~~~~~i~~~~~~~~~g~l~~r~g~~~~  286 (396)
T TIGR00882       207 LALELFRQRKFWMFVLYVVGVACVYDVFDQQFANFFTSFFATPQQGTRVFGYVTTMGELLNALIMFCAPLIINRIGAKNA  286 (396)
T ss_pred             HHHHHHcCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchh
Confidence            467788999888766555444433334445667776654    3333222  5666777788889999999999998765


Q ss_pred             CchhHHHHHHHHHHHHHHHHHH-hhhhHHHHHHHHHHHHHHhhhhhhHHHHHHHhhCCCchhhHHHH-HHhhhhhhHHhh
Q 017754          202 YPRPVAMAVAQVVMAFALLYYA-IGWPGEIYVTTVLVGLSYGAHWAIVPAAASELFGLKSFGALYNF-LTLASPAGSLIF  279 (366)
Q Consensus       202 ~~R~~~~~~~~~~~~~~~~l~~-~~~~~~l~~~~~l~G~~~g~~~~~~~~~~se~f~~~~~g~~~g~-~~~~~~~G~~i~  279 (366)
                      .      .++.++.+++..++. ..++..+++..++.|++.............+.++.+.+++.++. .+....+|+.+ 
T Consensus       287 l------~~~~~l~~l~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~at~~~~~~~~~~~lg~~~-  359 (396)
T TIGR00882       287 L------LIAGTIMSVRIIGSSFATTALEVVILKMLHAFEVPFLLVGCFKYITSQFDVRLSATIYLIGFQFAKQLAMIF-  359 (396)
T ss_pred             H------HHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCcceEEEeehHHHHHHHHHHHHH-
Confidence            5      565666666555544 34555666777778887766555556677888888888887766 56788899996 


Q ss_pred             hhHHHHHHHhhhhhhhhhhhhhccCCCCCcccCCCCCCcccCCcchHHHHHHHHHHHHHHHHHHHH
Q 017754          280 SGVIASGIYDYYAEKQAGLLWKYNGNMLPVSFRDQETPTCLGSICYSITCGIMAGLCIIAMVMSLI  345 (366)
Q Consensus       280 gp~l~G~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~g~~~~~~~f~i~~~~~~~~~~~~~~  345 (366)
                      +|.++|++.|..|                                |+.+|++.+++.++..+....
T Consensus       360 ~~~l~G~l~~~~G--------------------------------~~~~f~~~~~~~~i~~~~~~~  393 (396)
T TIGR00882       360 LSTLAGNMYDSIG--------------------------------FQGAYLVLGCIVLLFTLISVF  393 (396)
T ss_pred             HHHhHHHHHHhcc--------------------------------cHHHHHHHHHHHHHHHHHHHH
Confidence            9999999999887                                999999988887776665543

>TIGR00899 2A0120 sugar efflux transporter

Probab=99.29  E-value=1.3e-10  Score=112.18  Aligned_cols=165  Identities=13%  Similarity=-0.002  Sum_probs=114.7

Q ss_pred             HHhhhhHHHHHhcHHHHH-HHhCCChhHH--HHHHHHHHHhhhhhhhhhhhhhhhhhccCchhHHHHHHHHHHHHHHHHH
Q 017754          146 VLASGSGLTVIDNLGQIC-QSLGYADTSI--YVSMISIWNFLGRVGGGYFSEAIVRKFAYPRPVAMAVAQVVMAFALLYY  222 (366)
Q Consensus       146 ~~~~~~~~~~~~~l~~i~-~~~g~s~~~~--~vsl~~i~~~~g~~~~G~lsD~~grr~~~~R~~~~~~~~~~~~~~~~l~  222 (366)
                      ++...........+|.+. +++|.+....  ..+...+...+..++.|+++||+|||+.+     +..+.++..++.++.
T Consensus         7 ~~~~~~~~~~~~~l~~~l~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~Dr~g~r~~~-----~~~~~~~~~~~~~~~   81 (375)
T TIGR00899         7 FLTGIAGALQFPTLSLFLSEEVRARPAMIGLFYTGSAIVGIAVSQLLATRSDYQGDRKGL-----ILFCCLLAALACLLF   81 (375)
T ss_pred             HHHHHHHHHHhhHHHHHHHcccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCchHH-----HHHHHHHHHHHHHHH
Confidence            333333344455666654 6789887765  67788888899999999999999986643     133344444444444


Q ss_pred             Hh-hhhHHHHHHHHHHHHHHhhhhhhHHHHHHHhhCCCchhhH--HHHHHhhhhhhHHhhhhHHHHHHHhhhhhhhhhhh
Q 017754          223 AI-GWPGEIYVTTVLVGLSYGAHWAIVPAAASELFGLKSFGAL--YNFLTLASPAGSLIFSGVIASGIYDYYAEKQAGLL  299 (366)
Q Consensus       223 ~~-~~~~~l~~~~~l~G~~~g~~~~~~~~~~se~f~~~~~g~~--~g~~~~~~~~G~~i~gp~l~G~l~d~~~~~~~~~~  299 (366)
                      +. .+...+++..++.|.+.+...+...+...|..+.+.++..  .+.......+|..+ ||.++|++.+..+       
T Consensus        82 ~~~~~~~~l~~~~~~~g~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i-g~~~~~~l~~~~~-------  153 (375)
T TIGR00899        82 AWNRNYFLLLVLGVLLSSFASTANPQLFALAREHADRTGREAVMFSSVMRAQISLAWVI-GPPLAFWLALGFG-------  153 (375)
T ss_pred             HhcchHHHHHHHHHHHHhhhhhhHHHHHHHHHHHhhhcchhhHHHHHHHHHHHhHHHHH-hhhHHHHHHHhcc-------
Confidence            43 3444566666777766666667667777888876666543  57777888899986 9999999988766       


Q ss_pred             hhccCCCCCcccCCCCCCcccCCcchHHHHHHHHHHHHHHHHHHHHHhh
Q 017754          300 WKYNGNMLPVSFRDQETPTCLGSICYSITCGIMAGLCIIAMVMSLIVVH  348 (366)
Q Consensus       300 ~~~~~~~~~~~~~~~~~~~c~g~~~~~~~f~i~~~~~~~~~~~~~~~~~  348 (366)
                                               |++.|++.++++++..+..+.+.+
T Consensus       154 -------------------------~~~~f~~~~~~~~~~~~~~~~~~~  177 (375)
T TIGR00899       154 -------------------------FTVMFLTAALAFVLCGVLVWLFLP  177 (375)
T ss_pred             -------------------------cHHHHHHHHHHHHHHHHHHHHhCC
Confidence                                     999999988877776666555443

This family of proteins is an efflux system for lactose, glucose, aromatic glucosides and galactosides, cellobiose, maltose, a-methyl glucoside and other sugar compounds. They are found in both gram-negative and gram-postitive bacteria.

>TIGR00900 2A0121 H+ Antiporter protein

Probab=99.29  E-value=1.5e-10  Score=110.67  Aligned_cols=156  Identities=15%  Similarity=0.091  Sum_probs=117.4

Q ss_pred             HHHHhhhhhHHHHHHHHHHhhhhHHHHH-hcHHHHHHH-hCCChhHH--HHHHHHHHHhhhhhhhhhhhhhhhhhccCch
Q 017754          129 LPQALMKADFLLLFFSLVLASGSGLTVI-DNLGQICQS-LGYADTSI--YVSMISIWNFLGRVGGGYFSEAIVRKFAYPR  204 (366)
Q Consensus       129 ~~~~l~~~~~~ll~~~~~~~~~~~~~~~-~~l~~i~~~-~g~s~~~~--~vsl~~i~~~~g~~~~G~lsD~~grr~~~~R  204 (366)
                      +++.++++.+|.+.+..++......... .+.|.+.++ +|++....  ..+...++..+++++.|+++||++||+..  
T Consensus       203 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~--  280 (365)
T TIGR00900       203 IKFVLKNPLLRTLLLLALLFNLVFAPAIVALFPYVQSKYLGRGSTHYGWVLAAFGLGALLGALLLGLLGRYFKRMALM--  280 (365)
T ss_pred             HHHHHcCcHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhchhHHH--
Confidence            4455677777776665555554444444 677888776 78876654  67778888999999999999999876543  


Q ss_pred             hHHHHHHHHHHHHHHHHHHhhh--hHHHHHHHHHHHHHHhhhhhhHHHHHHHhhCCCchhhHHHHHHhhhhhhHHhhhhH
Q 017754          205 PVAMAVAQVVMAFALLYYAIGW--PGEIYVTTVLVGLSYGAHWAIVPAAASELFGLKSFGALYNFLTLASPAGSLIFSGV  282 (366)
Q Consensus       205 ~~~~~~~~~~~~~~~~l~~~~~--~~~l~~~~~l~G~~~g~~~~~~~~~~se~f~~~~~g~~~g~~~~~~~~G~~i~gp~  282 (366)
                          ..+..+.+++.+++....  ...+++..++.|++.+...+...+++.|.+|++++|+.+++.+....+|..+ +|.
T Consensus       281 ----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~-g~~  355 (365)
T TIGR00900       281 ----TGAIFVIGLAILVVGLTPPNFPLFLVLWFAIGVGYGPINVPQGTLLQRRVPAELLGRVFGAQFSLSHAAWPL-GLI  355 (365)
T ss_pred             ----HHHHHHHHHHHHHHHhhchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHH-HHH
Confidence                444444555544444322  4455677788899988888888899999999999999999999999999996 999


Q ss_pred             HHHHHHhhh
Q 017754          283 IASGIYDYY  291 (366)
Q Consensus       283 l~G~l~d~~  291 (366)
                      ++|++.|..
T Consensus       356 ~~g~l~~~~  364 (365)
T TIGR00900       356 LAGPLADHL  364 (365)
T ss_pred             HHHHHHHHc
Confidence            999999875

>KOG4686 consensus Predicted sugar transporter [Carbohydrate transport and metabolism]

Probab=99.29  E-value=5e-11  Score=109.19  Aligned_cols=151  Identities=17%  Similarity=0.095  Sum_probs=119.4

Q ss_pred             hhhHHHHHHHHHHhhhhHHHHHhcHHHHH-HHhCCChhHH--HHHHHHHHHhhhhhhhhhhhhhhhhhccCchhHHHHHH
Q 017754          135 KADFLLLFFSLVLASGSGLTVIDNLGQIC-QSLGYADTSI--YVSMISIWNFLGRVGGGYFSEAIVRKFAYPRPVAMAVA  211 (366)
Q Consensus       135 ~~~~~ll~~~~~~~~~~~~~~~~~l~~i~-~~~g~s~~~~--~vsl~~i~~~~g~~~~G~lsD~~grr~~~~R~~~~~~~  211 (366)
                      .|.||++....++.+....-++..-|.+. +.+|+|..++  ..+.....+.+..++.|.++|++|++..     +.+.+
T Consensus       263 ~ppfw~~~iicv~yyva~fPFi~lg~~fF~~rfGlS~~~a~~i~s~vy~Isav~spvfg~i~Dk~G~n~~-----wv~~a  337 (459)
T KOG4686|consen  263 YPPFWVLVIICVLYYVAWFPFITLGPMFFQKRFGLSAVSAGNILSTVYGISAVLSPVFGAISDKYGFNLW-----WVASA  337 (459)
T ss_pred             CccHHHHHHHHHHHHHHHHHHhhhhHHHHHHhhCCChhhccchhhhhhhhhhhhhhhHHHhHhhhcceeh-----hHHHH
Confidence            46799998888887777666666555554 4589988765  8888888889999999999999998654     34666


Q ss_pred             HHHHHHHHHHHHhhhhHHHHHHHHHHHHHHhhhhhhHHHHHHHhhCCCchhhHHHHHHhhhhhhHHhhhhHHHHHHHhhh
Q 017754          212 QVVMAFALLYYAIGWPGEIYVTTVLVGLSYGAHWAIVPAAASELFGLKSFGALYNFLTLASPAGSLIFSGVIASGIYDYY  291 (366)
Q Consensus       212 ~~~~~~~~~l~~~~~~~~l~~~~~l~G~~~g~~~~~~~~~~se~f~~~~~g~~~g~~~~~~~~G~~i~gp~l~G~l~d~~  291 (366)
                      .+....++..+.++. ..-|+...+.|+.+...-...|..++-+.|.+..|++||++....++|-.+ .|+++|++.|..
T Consensus       338 ~~~tl~~H~~l~Ft~-lsPy~~m~~lGLsysllAcslWP~va~~vpE~qLGTaygf~qsIqNLgla~-i~Iiag~i~d~~  415 (459)
T KOG4686|consen  338 CILTLLGHSGLFFTF-LSPYTSMTFLGLSYSLLACSLWPCVASLVPEEQLGTAYGFIQSIQNLGLAF-IPIIAGFIADGD  415 (459)
T ss_pred             HHHHHHHhhhHHhhh-ccHHHHHHHHhhhHHHHHHHHhhhhhhhCCHHHhcchHHHHHHHHhhhhhH-HhhhhheeecCC
Confidence            677777777766432 223567778888877766667888888898899999999999999999996 899999999987


Q ss_pred             h
Q 017754          292 A  292 (366)
Q Consensus       292 ~  292 (366)
                      +
T Consensus       416 g  416 (459)
T KOG4686|consen  416 G  416 (459)
T ss_pred             C
Confidence            6

>TIGR00882 2A0105 oligosaccharide:H+ symporter

Probab=99.29  E-value=1.1e-10  Score=114.36  Aligned_cols=170  Identities=15%  Similarity=0.118  Sum_probs=117.8

Q ss_pred             hhhHHHHHHHHHHhhhhHHHHHhcHHHHHH-HhCCChhHH--HHHHHHHHHhhhhhhhhhhhhhhhhhccCchhHHHHHH
Q 017754          135 KADFLLLFFSLVLASGSGLTVIDNLGQICQ-SLGYADTSI--YVSMISIWNFLGRVGGGYFSEAIVRKFAYPRPVAMAVA  211 (366)
Q Consensus       135 ~~~~~ll~~~~~~~~~~~~~~~~~l~~i~~-~~g~s~~~~--~vsl~~i~~~~g~~~~G~lsD~~grr~~~~R~~~~~~~  211 (366)
                      +|++|.+...+++.......+..++|.+.+ ++|++..+.  ..++..+...++++.+|+++||+|||+.+      ..+
T Consensus         1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~l~~~i~~~~~G~l~Dr~grr~~~------~~~   74 (396)
T TIGR00882         1 NTNFWMFGLFFFLYFFIMSAYFPFFPIWLHDVNGLSKTDTGIVFSCISLFSILFQPLFGLISDKLGLKKHL------LWI   74 (396)
T ss_pred             ChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcHHHH------HHH
Confidence            578999888888877777777778887765 479988776  89999999999999999999999998765      222


Q ss_pred             HHHHHHH---HHHHHhh------hhHHHHHHHHHHHHHHhhhhhhHHHHHHHhhCCCchhhHHHHHHhhhhhhHHhhhhH
Q 017754          212 QVVMAFA---LLYYAIG------WPGEIYVTTVLVGLSYGAHWAIVPAAASELFGLKSFGALYNFLTLASPAGSLIFSGV  282 (366)
Q Consensus       212 ~~~~~~~---~~l~~~~------~~~~l~~~~~l~G~~~g~~~~~~~~~~se~f~~~~~g~~~g~~~~~~~~G~~i~gp~  282 (366)
                      .+..+++   ...+...      ......+..++.|++.+...+....++.+.-  ++.+..+|.......+|..+ ||.
T Consensus        75 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~--~~~~~~~g~~~~~~~~g~~~-g~~  151 (396)
T TIGR00882        75 ISGLLVLFAPFFIYVFGPLLQSNILVGAIVGGLYLGFVFSAGAGAIEAYIEKVS--RNSNFEYGKARMFGCVGWAL-CAS  151 (396)
T ss_pred             HHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhccchhhHHHHHHHhh--hhcccccchhhhhcccHHHH-HHH
Confidence            2222211   1111111      1112344456677777766666666666642  33456777777888899996 999


Q ss_pred             HHHHHHhhhhhhhhhhhhhccCCCCCcccCCCCCCcccCCcchHHHHHHHHHHHHHHHHHHHHH
Q 017754          283 IASGIYDYYAEKQAGLLWKYNGNMLPVSFRDQETPTCLGSICYSITCGIMAGLCIIAMVMSLIV  346 (366)
Q Consensus       283 l~G~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~g~~~~~~~f~i~~~~~~~~~~~~~~~  346 (366)
                      ++|.+.+. +                                |+..|++.++++++.+++.+..
T Consensus       152 ~~g~l~~~-~--------------------------------~~~~f~~~~~~~~~~~~~~~~~  182 (396)
T TIGR00882       152 IAGILFSI-D--------------------------------PQIVFWLGSGFALILMLLLMFA  182 (396)
T ss_pred             HHhhhhcc-C--------------------------------chHHHHHHHHHHHHHHHHHHHh
Confidence            99988753 4                                8999998888777766555443

>PRK09528 lacY galactoside permease; Reviewed

Probab=99.28  E-value=9.1e-11  Score=116.00  Aligned_cols=173  Identities=14%  Similarity=0.088  Sum_probs=112.2

Q ss_pred             HhhhhhHHHHHHHHHHhhhhHHHHHhcHHHHHHH-hCCChhHH--HHHHHHHHHhhhhhhhhhhhhhhhhhccCchhHHH
Q 017754          132 ALMKADFLLLFFSLVLASGSGLTVIDNLGQICQS-LGYADTSI--YVSMISIWNFLGRVGGGYFSEAIVRKFAYPRPVAM  208 (366)
Q Consensus       132 ~l~~~~~~ll~~~~~~~~~~~~~~~~~l~~i~~~-~g~s~~~~--~vsl~~i~~~~g~~~~G~lsD~~grr~~~~R~~~~  208 (366)
                      .++++++|.+.+.+++.......+...+|.+.++ +|++..++  ..+...+...++++++|+++||+|||+..      
T Consensus         6 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~g~s~~~~g~~~s~~~l~~~i~~~~~G~l~Dr~g~r~~~------   79 (420)
T PRK09528          6 YLKNPNYWIFSLFFFFFFFIWSSWFSFFPIWLHDINGLSGTDTGIIFSANSLFALLFQPLYGLISDKLGLKKHL------   79 (420)
T ss_pred             hhcCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCchHHH------
Confidence            4567889998888887777666677777777766 89998776  89999999999999999999999997654      


Q ss_pred             HHHHHHHHHHHH---HHHhhhh--HHH----HHHHHHHHHHHhhhhhhHHHHHHHhhCCCchhhHHHHHHhhhhhhHHhh
Q 017754          209 AVAQVVMAFALL---YYAIGWP--GEI----YVTTVLVGLSYGAHWAIVPAAASELFGLKSFGALYNFLTLASPAGSLIF  279 (366)
Q Consensus       209 ~~~~~~~~~~~~---l~~~~~~--~~l----~~~~~l~G~~~g~~~~~~~~~~se~f~~~~~g~~~g~~~~~~~~G~~i~  279 (366)
                      .++..+.+++..   .......  ...    +++.++.|.+.....+....+..+ + .+++|..+|.......+|..+ 
T Consensus        80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~-~~~~g~~~g~~~~~~~~g~~i-  156 (420)
T PRK09528         80 LWIISGLLVLFGPFFIYVFAPLLQYNILLGAIVGGIYLGFGFLAGAGAIEAYIER-V-SRRSGFEYGRARMWGSLGWAL-  156 (420)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhccchhhhhhHHHH-H-HhhccccchhhHHhhhHHHHH-
Confidence            222222222211   1111100  011    112222333332322333333322 2 345677888888888999996 


Q ss_pred             hhHHHHHHHhhhhhhhhhhhhhccCCCCCcccCCCCCCcccCCcchHHHHHHHHHHHHHHHHHHHHH
Q 017754          280 SGVIASGIYDYYAEKQAGLLWKYNGNMLPVSFRDQETPTCLGSICYSITCGIMAGLCIIAMVMSLIV  346 (366)
Q Consensus       280 gp~l~G~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~g~~~~~~~f~i~~~~~~~~~~~~~~~  346 (366)
                      +|.++|.+++. +                                |+..|++.+++++++.++.+..
T Consensus       157 ~~~~~g~l~~~-~--------------------------------~~~~f~~~~~~~~~~~~~~~~~  190 (420)
T PRK09528        157 CAFIAGILFNI-N--------------------------------PQINFWLGSGSALILLVLLFFA  190 (420)
T ss_pred             HHHHHHHHHhc-C--------------------------------chHhHHHHHHHHHHHHHHHhcc
Confidence            99999999864 3                                8888988877776665555444

>PRK15075 citrate-proton symporter; Provisional

Probab=99.28  E-value=2.8e-10  Score=113.15  Aligned_cols=155  Identities=12%  Similarity=0.073  Sum_probs=99.1

Q ss_pred             HHhhhhhHHHHHH-HHHHhhhhHHHHHhcHHHHHHH-hCCChhHH--HHHHHHHHHhhhhhhhhhhhhhhhhhccCchhH
Q 017754          131 QALMKADFLLLFF-SLVLASGSGLTVIDNLGQICQS-LGYADTSI--YVSMISIWNFLGRVGGGYFSEAIVRKFAYPRPV  206 (366)
Q Consensus       131 ~~l~~~~~~ll~~-~~~~~~~~~~~~~~~l~~i~~~-~g~s~~~~--~vsl~~i~~~~g~~~~G~lsD~~grr~~~~R~~  206 (366)
                      ...++++.|...+ ..++..........++|.+.++ +|++..+.  ...+..+++.++++++|+++||++||+..    
T Consensus       232 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~Dr~g~r~~~----  307 (434)
T PRK15075        232 SLAANWRIVLAGMLMVAMTTVSFYLITVYTPTFGKTVLHLSAADSLLVTLCVGVSNFIWLPIGGALSDRIGRRPVL----  307 (434)
T ss_pred             HHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHH----
Confidence            3345555554432 2233333445567789998876 79987655  55667788899999999999999987543    


Q ss_pred             HHHHHHHHHHH-HHHH--HHhhh--hHHHHHHHHHHHHHHhhhhhhHHHHHHHhhCCCchhhHHHHHHh-hhhhhHHhhh
Q 017754          207 AMAVAQVVMAF-ALLY--YAIGW--PGEIYVTTVLVGLSYGAHWAIVPAAASELFGLKSFGALYNFLTL-ASPAGSLIFS  280 (366)
Q Consensus       207 ~~~~~~~~~~~-~~~l--~~~~~--~~~l~~~~~l~G~~~g~~~~~~~~~~se~f~~~~~g~~~g~~~~-~~~~G~~i~g  280 (366)
                        ..+.++..+ +...  .....  ........++.+++.+...+..+.+++|.+|.+.|++..++.+. +..+++.+ +
T Consensus       308 --~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~e~~p~~~rg~~~g~~~~~~~~~~g~~-~  384 (434)
T PRK15075        308 --IAFTVLAILTAYPALSWLVAAPSFARMLAVELWLSFLYGSYNGAMVVALTEVMPAEVRTAGFSLAYSLATAIFGGF-T  384 (434)
T ss_pred             --HHHHHHHHHHHHHHHHHHHcCCchHHHHHHHHHHHHHHHHHHhhHHHHHHHHCCCCccchheeHHHHHHHHHHhhh-H
Confidence              222222111 1111  11111  12233334555667776666677889999999999999998644 44445664 8


Q ss_pred             hHHHHHHHhhhh
Q 017754          281 GVIASGIYDYYA  292 (366)
Q Consensus       281 p~l~G~l~d~~~  292 (366)
                      |.+.|++.|..+
T Consensus       385 p~~~g~i~~~~g  396 (434)
T PRK15075        385 PAISTWLIHVTG  396 (434)
T ss_pred             HHHHHHHHHhcC
Confidence            999999999876

>PRK10091 MFS transport protein AraJ; Provisional

Probab=99.27  E-value=3.1e-10  Score=110.83  Aligned_cols=177  Identities=18%  Similarity=0.113  Sum_probs=112.6

Q ss_pred             HHHhhhhhHHHHHHHHHHhhhhHHHHHhcHHHHH-HHhCCChhHH--HHHHHHHHHhhhhhhhhhhhhhhhhhccCchhH
Q 017754          130 PQALMKADFLLLFFSLVLASGSGLTVIDNLGQIC-QSLGYADTSI--YVSMISIWNFLGRVGGGYFSEAIVRKFAYPRPV  206 (366)
Q Consensus       130 ~~~l~~~~~~ll~~~~~~~~~~~~~~~~~l~~i~-~~~g~s~~~~--~vsl~~i~~~~g~~~~G~lsD~~grr~~~~R~~  206 (366)
                      .+.++++.+|.++...++..........+++.+. +..|++....  +.++..++..+++++.|+++||+++|+..    
T Consensus       193 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~~~~~~~~~~~~~ig~~~~g~l~~r~~~~~~~----  268 (382)
T PRK10091        193 FHFLRSPAPWLIFAATMFGNAGVFAWFSYIKPYMMFISGFSETSMTFIMMLVGLGMVLGNLLSGRLSGRYSPLRIA----  268 (382)
T ss_pred             HHHhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHhHHHheeccccCchhHH----
Confidence            3566788888876665554433333334445444 4578887655  77888999999999999999999886554    


Q ss_pred             HHHHHHHHHHHHHHHHH--hhhhHHHHHHHHHHHHHHhhhhhhHH-HHHHHhhCCCchhhHHHHHHhhhhhhHHhhhhHH
Q 017754          207 AMAVAQVVMAFALLYYA--IGWPGEIYVTTVLVGLSYGAHWAIVP-AAASELFGLKSFGALYNFLTLASPAGSLIFSGVI  283 (366)
Q Consensus       207 ~~~~~~~~~~~~~~l~~--~~~~~~l~~~~~l~G~~~g~~~~~~~-~~~se~f~~~~~g~~~g~~~~~~~~G~~i~gp~l  283 (366)
                        ..+..+++++.+++.  ..+.....+..++.+++.++..+... ....+..+.+.++...  .+....+|..+ ||.+
T Consensus       269 --~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~g~~~-Gp~~  343 (382)
T PRK10091        269 --AVTDFIIVLALLMLFFFGGMKTASLIFAFICCAGLFALSAPLQILLLQNAKGGELLGAAG--GQIAFNLGSAI-GAYC  343 (382)
T ss_pred             --HHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhhhHHHHHHHHHhCCcchHHHHHH--HHHHHHHHHHH-HHHH
Confidence              445555555554432  22233334444455555443333223 3444555555566543  35567889996 9999


Q ss_pred             HHHHHhhhhhhhhhhhhhccCCCCCcccCCCCCCcccCCcchHHHHHHHHHHHHHHHHHHHHH
Q 017754          284 ASGIYDYYAEKQAGLLWKYNGNMLPVSFRDQETPTCLGSICYSITCGIMAGLCIIAMVMSLIV  346 (366)
Q Consensus       284 ~G~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~g~~~~~~~f~i~~~~~~~~~~~~~~~  346 (366)
                      +|+++|.++                               +|+..+.+.+++++++......+
T Consensus       344 ~G~l~~~~~-------------------------------~~~~~~~~~~~~~~~~~~~~~~~  375 (382)
T PRK10091        344 GGMMLTLGL-------------------------------AYNYVALPAALLSFAAMSSLLLY  375 (382)
T ss_pred             hHHHHHccc-------------------------------CcchHHHHHHHHHHHHHHHHHHH
Confidence            999999764                               29999988887776665554443

>PRK11010 ampG muropeptide transporter; Validated

Probab=99.27  E-value=5.9e-10  Score=112.88  Aligned_cols=170  Identities=13%  Similarity=0.065  Sum_probs=124.3

Q ss_pred             hHHHHHHHHHHhhhhHHHHHhcHHHHHHHhCCChhHH-HHHHHHHHHhhhhhhhhhhhhhh-----hhhccCchhHHHHH
Q 017754          137 DFLLLFFSLVLASGSGLTVIDNLGQICQSLGYADTSI-YVSMISIWNFLGRVGGGYFSEAI-----VRKFAYPRPVAMAV  210 (366)
Q Consensus       137 ~~~ll~~~~~~~~~~~~~~~~~l~~i~~~~g~s~~~~-~vsl~~i~~~~g~~~~G~lsD~~-----grr~~~~R~~~~~~  210 (366)
                      +.+.++...+............+|.+.++.|.+..++ ..+..... .++++++|+++||+     |||+     .++..
T Consensus        13 ~~~~~~~l~~~~gl~~~~~~~~l~~~l~~~g~~~~~ig~~~~~~~~-~~~~~l~gpl~Dr~~~~~~Grrr-----~~ll~   86 (491)
T PRK11010         13 NSAILLILGFASGLPLALTSGTLQAWMTVENIDLKTIGFFSLVGQA-YVFKFLWSPLMDRYTPPFLGRRR-----GWLLA   86 (491)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH-HHHHHHHHHHHHcccccCCCCch-----HHHHH
Confidence            3444444444444444456677888999999987776 44444433 36899999999999     6543     34566


Q ss_pred             HHHHHHHHHHHHHhh----hhHHHHHHHHHHHHHHhhhhhhHHHHHHHhhCCCchhhHHHHHHhhhhhhHHhhhhHHHHH
Q 017754          211 AQVVMAFALLYYAIG----WPGEIYVTTVLVGLSYGAHWAIVPAAASELFGLKSFGALYNFLTLASPAGSLIFSGVIASG  286 (366)
Q Consensus       211 ~~~~~~~~~~l~~~~----~~~~l~~~~~l~G~~~g~~~~~~~~~~se~f~~~~~g~~~g~~~~~~~~G~~i~gp~l~G~  286 (366)
                      +++.++++...++..    +...+++..++.+++.+...+...++++|+++.++|+.+.++..++..+|..+ ++.+.++
T Consensus        87 ~~i~~~~~~~~~a~~~~~~~l~~l~~~~~l~~~~~a~~~i~~~a~~~~~~~~~~rg~~~~i~~~g~~lG~ll-g~~l~~~  165 (491)
T PRK11010         87 TQLLLLVAIAAMGFLEPGTQLRWLAALAVVIAFCSASQDIVFDAWKTDVLPAEERGAGAAISVLGYRLAMLV-SGGLALW  165 (491)
T ss_pred             HHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcChhhhHHHHHHHHHHHHHHHHH-HHHHHHH
Confidence            666666665554422    23356667778888888888888999999999999999999999999999996 8999999


Q ss_pred             HHhh-hhhhhhhhhhhccCCCCCcccCCCCCCcccCCcchHHHHHHHHHHHHHHHHHHHH
Q 017754          287 IYDY-YAEKQAGLLWKYNGNMLPVSFRDQETPTCLGSICYSITCGIMAGLCIIAMVMSLI  345 (366)
Q Consensus       287 l~d~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~g~~~~~~~f~i~~~~~~~~~~~~~~  345 (366)
                      +.+. .+                                ||..|++.+++.+++.+..+.
T Consensus       166 l~~~~~G--------------------------------Wr~~f~i~a~l~ll~~l~~~~  193 (491)
T PRK11010        166 LADRYLG--------------------------------WQGMYWLMAALLIPCIIATLL  193 (491)
T ss_pred             HHhcccC--------------------------------HHHHHHHHHHHHHHHHHHHHh
Confidence            9874 34                                999999999877776555444

>PTZ00207 hypothetical protein; Provisional

Probab=99.26  E-value=4.7e-10  Score=114.98  Aligned_cols=155  Identities=10%  Similarity=0.064  Sum_probs=114.4

Q ss_pred             HHHHHhcHHHHHHHhCCChhHH-HHHHHHHHHhhhhhhhhhhhhhhhhhccCchhHHHHHHHHHHHHHHHHHHhh-----
Q 017754          152 GLTVIDNLGQICQSLGYADTSI-YVSMISIWNFLGRVGGGYFSEAIVRKFAYPRPVAMAVAQVVMAFALLYYAIG-----  225 (366)
Q Consensus       152 ~~~~~~~l~~i~~~~g~s~~~~-~vsl~~i~~~~g~~~~G~lsD~~grr~~~~R~~~~~~~~~~~~~~~~l~~~~-----  225 (366)
                      .+.+....+++.+++|++..+. .++..+....++.+..|+++||+|+|+.+      .++.++.+++.++.+..     
T Consensus        43 ~y~fsv~s~~L~~~lgls~~~l~~i~svg~~~g~~~lp~G~L~Dr~G~R~vl------lig~ll~~iG~ll~ala~~~~i  116 (591)
T PTZ00207         43 MYAFNLISGAMQARYNLTQRDLSTITTVGIAVGYFLLPYSFIYDYLGPRPIF------VLSMTVFCLGTLLFALTFQEVI  116 (591)
T ss_pred             HHHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcHHHH------HHHHHHHHHHHHHHHHHhcccc
Confidence            3455556788889999998765 22222233334566789999999988766      77778888887776643     


Q ss_pred             --hhHHHHHHHHHHHHHHhhhhhhHHHHHHHhhCCCchhhHHHHHHhhhhhhHHhhhhHHHHHHHhhhhhhhhhhhhhcc
Q 017754          226 --WPGEIYVTTVLVGLSYGAHWAIVPAAASELFGLKSFGALYNFLTLASPAGSLIFSGVIASGIYDYYAEKQAGLLWKYN  303 (366)
Q Consensus       226 --~~~~l~~~~~l~G~~~g~~~~~~~~~~se~f~~~~~g~~~g~~~~~~~~G~~i~gp~l~G~l~d~~~~~~~~~~~~~~  303 (366)
                        +...+++..++.|+|.+..++....++.++|| ++||.+.|+......+|+.+++++..+++.  .+           
T Consensus       117 ~~s~~~l~l~r~l~G~G~~~~~~~~~~~i~~~Fp-~~RG~a~Gi~~~~~gLGsaI~~~l~~~l~~--~~-----------  182 (591)
T PTZ00207        117 EGSVVRLSVYNGLMTLGCMLFDLGAVVTVLSVFP-SNRGAVVAIMKTFTGLGSAILGSIQLAFFS--DN-----------  182 (591)
T ss_pred             cCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCh-hhhHHHHHHHHHHHHHHHHHHHHHHHHHHH--Hh-----------
Confidence              44567788888999988777777788899995 789999999999999999876666666553  22           


Q ss_pred             CCCCCcccCCCCCCcccCCcchHHHHHHHHHHHHHHHHHHHHHh
Q 017754          304 GNMLPVSFRDQETPTCLGSICYSITCGIMAGLCIIAMVMSLIVV  347 (366)
Q Consensus       304 ~~~~~~~~~~~~~~~c~g~~~~~~~f~i~~~~~~~~~~~~~~~~  347 (366)
                                           |+..|++++++.++.+++.+.+.
T Consensus       183 ---------------------~~~~fl~l~vl~~vv~ll~~~~v  205 (591)
T PTZ00207        183 ---------------------TSAYFFFLMSFALVVGILAIVFM  205 (591)
T ss_pred             ---------------------HHHHHHHHHHHHHHHHHHHHhhe
Confidence                                 77788888877777666665554

>TIGR00895 2A0115 benzoate transport

Probab=99.26  E-value=9.2e-11  Score=113.55  Aligned_cols=144  Identities=11%  Similarity=0.106  Sum_probs=107.0

Q ss_pred             hHHHHHHHHHHhhhhHHHHHhcHHHHHHHhCCChhHH--HHHHHHHHHhhhhhhhhhhhhhhhhhccCchhHHHHHHHHH
Q 017754          137 DFLLLFFSLVLASGSGLTVIDNLGQICQSLGYADTSI--YVSMISIWNFLGRVGGGYFSEAIVRKFAYPRPVAMAVAQVV  214 (366)
Q Consensus       137 ~~~ll~~~~~~~~~~~~~~~~~l~~i~~~~g~s~~~~--~vsl~~i~~~~g~~~~G~lsD~~grr~~~~R~~~~~~~~~~  214 (366)
                      .++.+++.+++..........++|.+.+++|++....  ..++..++..+++++.|+++||+++|...      ....+.
T Consensus       251 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~------~~~~~~  324 (398)
T TIGR00895       251 ITVLLWLLYFMLLVGVYFLTNWLPKLMVELGFSLSLAATGGALFNFGGVIGSIIFGWLADRLGPRVTA------LLLLLG  324 (398)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchHHHH------HHHHHH
Confidence            3445555555555555566678888888889886654  77888889999999999999999886211      222222


Q ss_pred             HHHHHHHHH-hhhhHHHHHHHHHHHHHHhhhhhhHHHHHHHhhCCCchhhHHHHHHhhhhhhHHhhhhHHHHHH
Q 017754          215 MAFALLYYA-IGWPGEIYVTTVLVGLSYGAHWAIVPAAASELFGLKSFGALYNFLTLASPAGSLIFSGVIASGI  287 (366)
Q Consensus       215 ~~~~~~l~~-~~~~~~l~~~~~l~G~~~g~~~~~~~~~~se~f~~~~~g~~~g~~~~~~~~G~~i~gp~l~G~l  287 (366)
                      .....++.. ..+....++..++.|++.+...+...+.++|.+|.+++|+++|+.+....+|..+ ||.++|++
T Consensus       325 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~-g~~~~G~l  397 (398)
T TIGR00895       325 AVFAVLVGSTLFSPTLLLLLGAIAGFFVNGGQSGLYALMALFYPTAIRATGVGWAIGIGRLGAII-GPILAGYL  397 (398)
T ss_pred             HHHHHHHHHHhhCHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHHHHH-HHHhHHhc
Confidence            222222222 3344556777788899999889999999999999999999999999999999996 99999976

>PRK03893 putative sialic acid transporter; Provisional

Probab=99.26  E-value=1.5e-10  Score=116.65  Aligned_cols=132  Identities=13%  Similarity=0.161  Sum_probs=95.1

Q ss_pred             HHHhcHHHHHH-HhCCChhHH--HHHHHHHHHhhhhhhhhhhhhhhhhhccCchhHHHHHHHHHHHHHHHHHH-hhhh--
Q 017754          154 TVIDNLGQICQ-SLGYADTSI--YVSMISIWNFLGRVGGGYFSEAIVRKFAYPRPVAMAVAQVVMAFALLYYA-IGWP--  227 (366)
Q Consensus       154 ~~~~~l~~i~~-~~g~s~~~~--~vsl~~i~~~~g~~~~G~lsD~~grr~~~~R~~~~~~~~~~~~~~~~l~~-~~~~--  227 (366)
                      ....++|.+.+ ++|++..++  ..+...++..+|+++.|+++||++||+.+      .++.++..++.+++. ..+.  
T Consensus       293 ~~~~~lp~~l~~~~g~~~~~~g~~~~~~~~~~~~g~~~~g~l~dr~g~~~~~------~~~~~~~~~~~~~~~~~~~~~~  366 (496)
T PRK03893        293 PIQALLPTYLKTDLGYDPHTVANVLFFSGFGAAVGCCVGGFLGDWLGTRKAY------VCSLLISQLLIIPVFAIGGANV  366 (496)
T ss_pred             hHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHH------HHHHHHHHHHHHHHhhccccHH
Confidence            45567898885 789987665  78888899999999999999999987544      333333333333222 2111  


Q ss_pred             HHHHHHHHHHHHHHhhhhhhHHHHHHHhhCCCchhhHHHHHHhhhhhhHHhhhhHHHHHHHhhhh
Q 017754          228 GEIYVTTVLVGLSYGAHWAIVPAAASELFGLKSFGALYNFLTLASPAGSLIFSGVIASGIYDYYA  292 (366)
Q Consensus       228 ~~l~~~~~l~G~~~g~~~~~~~~~~se~f~~~~~g~~~g~~~~~~~~G~~i~gp~l~G~l~d~~~  292 (366)
                      ..+.+..++.++...+..+..+++++|.+|.+.+|+.+++.+....+|+.+ ||.++|.+.|..+
T Consensus       367 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~g~~l-gp~l~g~l~~~~g  430 (496)
T PRK03893        367 WVLGLLLFFQQMLGQGISGLLPKLIGGYFDTEQRAAGLGFTYNVGALGGAL-APILGALIAQRLD  430 (496)
T ss_pred             HHHHHHHHHHHHHhcccchhhHHHHHhhCCHHHhhcccchhhhhhhHHHHH-HHHHHHHHhccCC
Confidence            222233333333333445677888999999999999999999999999996 9999999999877

>PRK11010 ampG muropeptide transporter; Validated

Probab=99.25  E-value=1.1e-09  Score=110.98  Aligned_cols=179  Identities=12%  Similarity=0.118  Sum_probs=118.6

Q ss_pred             HHHHhhhhhHHHHHHHHHHhhhhHHHHHhcHHHHH-HHhCCChhHH--HH-HHHHHHHhhhhhhhhhhhhhhhhhccCch
Q 017754          129 LPQALMKADFLLLFFSLVLASGSGLTVIDNLGQIC-QSLGYADTSI--YV-SMISIWNFLGRVGGGYFSEAIVRKFAYPR  204 (366)
Q Consensus       129 ~~~~l~~~~~~ll~~~~~~~~~~~~~~~~~l~~i~-~~~g~s~~~~--~v-sl~~i~~~~g~~~~G~lsD~~grr~~~~R  204 (366)
                      +++.++++.+|.+.+..++..........+.+++. +.+|++..+.  .. .+..++..+|.+++|+++||+++|+..  
T Consensus       215 l~~~~~~~~~~~~ll~~~l~~~~~~~~~~~~~~~l~~~~G~s~~~~g~~~~~~g~i~~iiG~ll~G~L~dr~g~~~~l--  292 (491)
T PRK11010        215 LRDFFGRNNAWLILLLIVLYKLGDAFAMSLTTTFLIRGVGFDAGEVGLVNKTLGLLATIVGALYGGILMQRLSLFRAL--  292 (491)
T ss_pred             HHHHHcCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHH--
Confidence            45566666677655444433333333344555554 5689988776  33 344578889999999999999986533  


Q ss_pred             hHHHHHHHHHHHH---HHHHHHhh--hhHHHHHHHHHHHHHHhhhhhhHHHHHHHhhCCCchhhHHHHHHhhhhhhHHhh
Q 017754          205 PVAMAVAQVVMAF---ALLYYAIG--WPGEIYVTTVLVGLSYGAHWAIVPAAASELFGLKSFGALYNFLTLASPAGSLIF  279 (366)
Q Consensus       205 ~~~~~~~~~~~~~---~~~l~~~~--~~~~l~~~~~l~G~~~g~~~~~~~~~~se~f~~~~~g~~~g~~~~~~~~G~~i~  279 (366)
                          .++.++.++   .+.++...  +...+....++..++.|...+...+...++.+.+..++.+++.+....+|..+ 
T Consensus       293 ----~i~~~l~~l~~l~~~~l~~~~~~~~~l~~~~~l~~~~~g~~~~~~~a~~~~l~~~~~~~t~~gl~~s~~~lg~~~-  367 (491)
T PRK11010        293 ----MIFGILQGVSNAGYWLLSITDKNLYSMGAAVFFENLCGGMGTAAFVALLMTLCNKSFSATQFALLSALSAVGRVY-  367 (491)
T ss_pred             ----HHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHHHHHH-
Confidence                222222222   22222222  22223334444444555555666778889998888999999999999999986 


Q ss_pred             hhHHHHHHHhhhhhhhhhhhhhccCCCCCcccCCCCCCcccCCcchHHHHHHHHHHHHHHHHHHHHH
Q 017754          280 SGVIASGIYDYYAEKQAGLLWKYNGNMLPVSFRDQETPTCLGSICYSITCGIMAGLCIIAMVMSLIV  346 (366)
Q Consensus       280 gp~l~G~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~g~~~~~~~f~i~~~~~~~~~~~~~~~  346 (366)
                      ++.+.|+++|..|                                |+..|.+.+++++.+.++...+
T Consensus       368 ~~~~~G~l~~~~G--------------------------------~~~~f~~~~~~~l~~l~~~~~~  402 (491)
T PRK11010        368 VGPVAGWFVEAHG--------------------------------WPTFYLFSVAAAVPGLLLLLVC  402 (491)
T ss_pred             HHHHHHHHHHHhC--------------------------------hHHHHHHHHHHHHHHHHHHHHH
Confidence            7889999999877                                9999998888888877666554

>TIGR00891 2A0112 putative sialic acid transporter

Probab=99.25  E-value=4.4e-10  Score=109.32  Aligned_cols=132  Identities=17%  Similarity=0.241  Sum_probs=97.9

Q ss_pred             HHHhcHHHHHH-HhCCChhHH--HHHHHHHHHhhhhhhhhhhhhhhhhhccCchhHHHHHHHHHHHHHH-HHHHhh-hhH
Q 017754          154 TVIDNLGQICQ-SLGYADTSI--YVSMISIWNFLGRVGGGYFSEAIVRKFAYPRPVAMAVAQVVMAFAL-LYYAIG-WPG  228 (366)
Q Consensus       154 ~~~~~l~~i~~-~~g~s~~~~--~vsl~~i~~~~g~~~~G~lsD~~grr~~~~R~~~~~~~~~~~~~~~-~l~~~~-~~~  228 (366)
                      ....++|.+.+ ++|++..+.  ..+...++..+|+++.|+++||++||+..      .++.++..+.. .++... +..
T Consensus       256 ~~~~~~~~~~~~~~g~s~~~~~~~~~~~~~~~~~g~~~~g~l~dr~g~~~~~------~~~~~~~~~~~~~~~~~~~~~~  329 (405)
T TIGR00891       256 PIQDLLPTYLKADLGLSPHTVANIVVFSNIGAIVGGCVFGFLGDWLGRRKAY------VCSLLAGQLLIIPVFAIGANVA  329 (405)
T ss_pred             hhhhhhHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCchhhh------HHHHHHHHHHHHHHHHhCCchH
Confidence            44556777664 578887665  67788899999999999999999987655      33333332222 222222 223


Q ss_pred             HHHHHHHHHHHHHhhhhhhHHHHHHHhhCCCchhhHHHHHHhhhhhhHHhhhhHHHHHHHhhhh
Q 017754          229 EIYVTTVLVGLSYGAHWAIVPAAASELFGLKSFGALYNFLTLASPAGSLIFSGVIASGIYDYYA  292 (366)
Q Consensus       229 ~l~~~~~l~G~~~g~~~~~~~~~~se~f~~~~~g~~~g~~~~~~~~G~~i~gp~l~G~l~d~~~  292 (366)
                      .+.+..++.+++.++.++..++.++|.+|++++|+.+|+.+....+|+.+ +|+++|++.|+.+
T Consensus       330 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~~~-g~~~~g~l~~~~g  392 (405)
T TIGR00891       330 VLGLGLFFQQMLVQGIWGILPKHLGEYFPTDQRAAGLGFTYQLGNLGGAL-APIIGALLAQRLD  392 (405)
T ss_pred             HHHHHHHHHHHHHccchhhHHHHHhhhCCcchhHHHhhHHHHHHHHHHHH-HHHHHHHHHHhcc
Confidence            34444466677777777888899999999999999999999999999996 9999999999877

>PRK10504 putative transporter; Provisional

Probab=99.24  E-value=7e-10  Score=111.18  Aligned_cols=155  Identities=10%  Similarity=0.023  Sum_probs=114.5

Q ss_pred             HHhhhhhHHHHHHHHHHhhhhHHHHHhcHHHHHHH-hCCChhHH--HHHHHHHHHhhhhhhhhhhhhhhhhhccCchhHH
Q 017754          131 QALMKADFLLLFFSLVLASGSGLTVIDNLGQICQS-LGYADTSI--YVSMISIWNFLGRVGGGYFSEAIVRKFAYPRPVA  207 (366)
Q Consensus       131 ~~l~~~~~~ll~~~~~~~~~~~~~~~~~l~~i~~~-~g~s~~~~--~vsl~~i~~~~g~~~~G~lsD~~grr~~~~R~~~  207 (366)
                      +.++++.++......++............|++.+. +|++....  ......++..++.+++|+++||+++|+..     
T Consensus       256 ~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~l~~r~g~~~~~-----  330 (471)
T PRK10504        256 KLFRTRTFSLGLAGSFAGRIGSGMLPFMTPVFLQIGLGFSPFHAGLMMIPMVLGSMGMKRIVVQVVNRFGYRRVL-----  330 (471)
T ss_pred             HHhcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCchHHH-----
Confidence            57888988887777776665555566678888874 78877655  55556666777889999999999987654     


Q ss_pred             HHHHHHHHHHHHHHHHh----hhhHHHHHHHHHHHHHHhhhhhhHHHHHHHhhCCCchhhHHHHHHhhhhhhHHhhhhHH
Q 017754          208 MAVAQVVMAFALLYYAI----GWPGEIYVTTVLVGLSYGAHWAIVPAAASELFGLKSFGALYNFLTLASPAGSLIFSGVI  283 (366)
Q Consensus       208 ~~~~~~~~~~~~~l~~~----~~~~~l~~~~~l~G~~~g~~~~~~~~~~se~f~~~~~g~~~g~~~~~~~~G~~i~gp~l  283 (366)
                       ..+.++++++.+++..    .+...+.+..++.|++.+..++.....+.+.++.+.+|.++++.++...+|..+ |+.+
T Consensus       331 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~g~~i-g~~i  408 (471)
T PRK10504        331 -VATTLGLALVSLLFMLVALLGWYYLLPFVLFLQGMVNSTRFSSMNTLTLKDLPDNLASSGNSLLSMIMQLSMSI-GVTI  408 (471)
T ss_pred             -HHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHhccchHHHHHHHHHHHHHH-HHHH
Confidence             4445544444444332    112223345566778877777788888889999999999999999999999996 9999


Q ss_pred             HHHHHhhhh
Q 017754          284 ASGIYDYYA  292 (366)
Q Consensus       284 ~G~l~d~~~  292 (366)
                      +|.+.+..+
T Consensus       409 ~g~ll~~~g  417 (471)
T PRK10504        409 AGLLLGLFG  417 (471)
T ss_pred             HHHHHHHhh
Confidence            999998876

>COG2814 AraJ Arabinose efflux permease [Carbohydrate transport and metabolism]

Probab=99.24  E-value=7.7e-10  Score=107.36  Aligned_cols=179  Identities=17%  Similarity=0.239  Sum_probs=132.1

Q ss_pred             CHHHHhhhhhHHHHHHHHHHhhhhHHHHHhcHHHHHHH-hCCChhHH--HHHHHHHHHhhhhhhhhhhhhhhhhhccCch
Q 017754          128 TLPQALMKADFLLLFFSLVLASGSGLTVIDNLGQICQS-LGYADTSI--YVSMISIWNFLGRVGGGYFSEAIVRKFAYPR  204 (366)
Q Consensus       128 ~~~~~l~~~~~~ll~~~~~~~~~~~~~~~~~l~~i~~~-~g~s~~~~--~vsl~~i~~~~g~~~~G~lsD~~grr~~~~R  204 (366)
                      +..+.+|+|..|..++..++.....++...++.++.++ .|++.+..  ..-.++++.++|.+++|+++|| +.|+..  
T Consensus       203 ~~~~~l~~p~v~~~l~~t~l~~~g~F~~ftYi~P~L~~v~g~s~~~vs~~Ll~~Gv~~~~Gn~~gGrl~dr-~~~~~l--  279 (394)
T COG2814         203 TLLRLLRRPGVLLGLLATFLFMTGHFALYTYIRPFLESVAGFSVSAVSLVLLAFGIAGFIGNLLGGRLADR-GPRRAL--  279 (394)
T ss_pred             HHHHHhcCchHHHHHHHHHHHHcchhhhHHhHHHHHHHccCCCHhHHHHHHHHHHHHHHHHHHHHhhhccc-cchhHH--
Confidence            47788999999999988888888777766666666665 68877665  7888899999999999999999 554433  


Q ss_pred             hHHHHHHHHHHHHHHHHHH--hhhhHHHHHHHHHHHHHHhhhhhhHHHHHHHhhCCCchhhHHHHHHhhhhhhHHhhhhH
Q 017754          205 PVAMAVAQVVMAFALLYYA--IGWPGEIYVTTVLVGLSYGAHWAIVPAAASELFGLKSFGALYNFLTLASPAGSLIFSGV  282 (366)
Q Consensus       205 ~~~~~~~~~~~~~~~~l~~--~~~~~~l~~~~~l~G~~~g~~~~~~~~~~se~f~~~~~g~~~g~~~~~~~~G~~i~gp~  282 (366)
                          .....++++..+.+.  ..++....+..++.|+..+..........++ ..++....+.++...+.++|..+ |..
T Consensus       280 ----~~~~~l~a~~~l~l~~~~~~~~~~~~~~~~wg~a~~~~~~~~~~~~a~-~~p~~~~~a~sl~~aa~nlgia~-GA~  353 (394)
T COG2814         280 ----IAALLLLALALLALTFTGASPALALALLFLWGFAFSPALQGLQTRLAR-LAPDAADLAGSLNVAAFNLGIAL-GAA  353 (394)
T ss_pred             ----HHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHhhhhhhHHHHHhcc-cCCCchHHHHHHHHHHHHHHHHH-HHH
Confidence                344444444444443  2333344445555666655554445555566 55788999999999999999996 999


Q ss_pred             HHHHHHhhhhhhhhhhhhhccCCCCCcccCCCCCCcccCCcchHHHHHHHHHHHHHHHHHHHHHh
Q 017754          283 IASGIYDYYAEKQAGLLWKYNGNMLPVSFRDQETPTCLGSICYSITCGIMAGLCIIAMVMSLIVV  347 (366)
Q Consensus       283 l~G~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~g~~~~~~~f~i~~~~~~~~~~~~~~~~  347 (366)
                      ++|.++|+.+                                |....++.+.+.+++.++.++..
T Consensus       354 lGG~v~~~~g--------------------------------~~~~~~~~a~l~~~a~~~~~~~~  386 (394)
T COG2814         354 LGGLVLDALG--------------------------------YAATGWVGAALLLLALLLALLSA  386 (394)
T ss_pred             HHHHHHHhhc--------------------------------hHHHHHHHHHHHHHHHHHHHHHH
Confidence            9999999976                                99999998888888777765543

>TIGR00896 CynX cyanate transporter

Probab=99.23  E-value=2.4e-10  Score=110.18  Aligned_cols=131  Identities=13%  Similarity=0.146  Sum_probs=104.9

Q ss_pred             HHHhcHHHHHHHhCCChhHH--HHHHHHHHHhhhhhhhhhhhhhhhhhccCchhHHHHHHHHHHHHHHHHHHhhhhHHHH
Q 017754          154 TVIDNLGQICQSLGYADTSI--YVSMISIWNFLGRVGGGYFSEAIVRKFAYPRPVAMAVAQVVMAFALLYYAIGWPGEIY  231 (366)
Q Consensus       154 ~~~~~l~~i~~~~g~s~~~~--~vsl~~i~~~~g~~~~G~lsD~~grr~~~~R~~~~~~~~~~~~~~~~l~~~~~~~~l~  231 (366)
                      .+...+|.+.+++|++..+.  ..++..++..++.+..|+++||+|||+..      ..+.++..++.+.....+...++
T Consensus        18 ~~~~~lp~l~~~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~g~r~~~------~~~~~~~~~~~~~~~~~~~~~l~   91 (355)
T TIGR00896        18 SVGPLLPQIRSALGMSFSVAGLLTALPVLCFAVLAPLAPWLARRFGEERSV------AAGLLLIAAGILIRSAPGTALLF   91 (355)
T ss_pred             cCcccHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHhHHHHHHHhCchHHH------HHHHHHHHHHHHHHHhccHHHHH
Confidence            34567899999999998776  78899999999999999999999998765      44555555554444334556677


Q ss_pred             HHHHHHHHHHhhhhhhHHHHHHHhhCCCchhhHHHHHHhhhhhhHHhhhhHHHHHHHhhhh
Q 017754          232 VTTVLVGLSYGAHWAIVPAAASELFGLKSFGALYNFLTLASPAGSLIFSGVIASGIYDYYA  292 (366)
Q Consensus       232 ~~~~l~G~~~g~~~~~~~~~~se~f~~~~~g~~~g~~~~~~~~G~~i~gp~l~G~l~d~~~  292 (366)
                      +.+++.|++.+...+..+..+.|.++ ++++.+.++.+....+|..+ ++.+.+.+.+..+
T Consensus        92 ~~~~~~g~g~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~g~~i-~~~~~~~l~~~~~  150 (355)
T TIGR00896        92 AGTALIGVGIAIINVLLPSLIKRDFP-QRVGLMTGLYSMALMGGAAL-AAAATVPLAQHSG  150 (355)
T ss_pred             HHHHHHHHHHHHHhccchHHHHHhCc-chhhHHHHHHHHHHHHHHHH-HHHHHHHHHHhhh
Confidence            78888999988877777888889885 68999999999999999996 8999998877653

This family of proteins is involved in active transport of cyanate. The cyanate transporter in E.Coli is used to transport cyanate into the cell so it can be metabolized into ammonia and bicarbonate. This process is used to overcome the toxicity of environmental cyanate.

>TIGR00887 2A0109 phosphate:H+ symporter

Probab=99.23  E-value=6.9e-10  Score=112.51  Aligned_cols=109  Identities=17%  Similarity=0.211  Sum_probs=90.0

Q ss_pred             HHHHHHHHHhhhhhhhhhhhhhhhhhccCchhHHHHHHHHHHHHHHHHHHh-hh------hHHHHHHHHHHHHHHhhhhh
Q 017754          174 YVSMISIWNFLGRVGGGYFSEAIVRKFAYPRPVAMAVAQVVMAFALLYYAI-GW------PGEIYVTTVLVGLSYGAHWA  246 (366)
Q Consensus       174 ~vsl~~i~~~~g~~~~G~lsD~~grr~~~~R~~~~~~~~~~~~~~~~l~~~-~~------~~~l~~~~~l~G~~~g~~~~  246 (366)
                      ..+...++..+|.+++|+++||+|||+..      .++.+++.++.++.+. .+      ...+++++++.|++.|..++
T Consensus        61 ~~~~~~ig~~ig~~~~g~l~d~~Grr~~~------~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~r~l~G~~~g~~~~  134 (502)
T TIGR00887        61 VNGSASIGTLAGQLFFGWLADKLGRKRVY------GMELIIMIIATVASGLSPGSSPKSVMATLCFWRFWLGVGIGGDYP  134 (502)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhhccHHHH------HHHHHHHHHHHHHHHHccCcccchHHHHHHHHHHHHHHHHhhhhH
Confidence            78888899999999999999999998766      5555555555544442 22      34678899999999999999


Q ss_pred             hHHHHHHHhhCCCchhhHHHHHHhhhhhhHHhhhhHHHHHHHh
Q 017754          247 IVPAAASELFGLKSFGALYNFLTLASPAGSLIFSGVIASGIYD  289 (366)
Q Consensus       247 ~~~~~~se~f~~~~~g~~~g~~~~~~~~G~~i~gp~l~G~l~d  289 (366)
                      ..+.+++|.+|+++||.+.++......+|..+ ++.+...+..
T Consensus       135 ~~~~~~~e~~p~~~Rg~~~~~~~~~~~~g~~~-g~~~~~~~~~  176 (502)
T TIGR00887       135 LSAIITSEFATKKWRGAMMAAVFAMQGFGILA-GAIVALIVLA  176 (502)
T ss_pred             HHHHHHHHhcChhhHHHHHHHHHHHHHHHHHH-HHHHHHHHHH
Confidence            99999999999999999999999999999985 8888776654

This model represents the phosphate uptake symporter subfamily of the major facilitator superfamily (pfam00083).

>TIGR00806 rfc RFC reduced folate carrier

Probab=99.23  E-value=7e-10  Score=109.76  Aligned_cols=162  Identities=10%  Similarity=0.067  Sum_probs=127.3

Q ss_pred             HHhcHHHHHHHhCCChhH-H--HHHHHHHHHhhhhhhhhhhhhhhhhhccCchhHHHHHHHHHHHHHHHHHHh-hhhHHH
Q 017754          155 VIDNLGQICQSLGYADTS-I--YVSMISIWNFLGRVGGGYFSEAIVRKFAYPRPVAMAVAQVVMAFALLYYAI-GWPGEI  230 (366)
Q Consensus       155 ~~~~l~~i~~~~g~s~~~-~--~vsl~~i~~~~g~~~~G~lsD~~grr~~~~R~~~~~~~~~~~~~~~~l~~~-~~~~~l  230 (366)
                      .....|++.+++|++..+ .  ..+.+..+..+..+.+|+++||+|-|+.+      .++.+.-++..++.+. .+...+
T Consensus        45 ~s~a~p~L~~elglT~~qv~G~I~s~F~ysYal~qIp~GlLaDrlG~K~vL------~l~~l~Wsl~t~L~~fa~Sl~~L  118 (511)
T TIGR00806        45 ESFITPYLLTVLNFTEETVTNEIIPVLPYSHLAVLVPVFLLTDYLRYKPVL------VLQALSFVCVWLLLLLGTSVWHM  118 (511)
T ss_pred             HHHHHHHHHHHcCCCHHHhcchHHHHHHHHHHHHHHHHHHHHHHhCchHHH------HHHHHHHHHHHHHHHHHHHHHHH
Confidence            334567788899999888 4  88888899999999999999999987765      5555555555555553 355678


Q ss_pred             HHHHHHHHHHHhhhhhhHHHHHHHhhCCCchhhHHHHHHhhhhhhHHhhhhHHHHHHHhhhhhhhhhhhhhccCCCCCcc
Q 017754          231 YVTTVLVGLSYGAHWAIVPAAASELFGLKSFGALYNFLTLASPAGSLIFSGVIASGIYDYYAEKQAGLLWKYNGNMLPVS  310 (366)
Q Consensus       231 ~~~~~l~G~~~g~~~~~~~~~~se~f~~~~~g~~~g~~~~~~~~G~~i~gp~l~G~l~d~~~~~~~~~~~~~~~~~~~~~  310 (366)
                      .+..++.|++-|+.+ ....++...||+++|+++.++.+.+..+|.++ ++++++++. ..+.+                
T Consensus       119 ~i~R~llGvaEA~~~-A~~syI~~WfP~kER~ratsi~~sg~~vG~~I-a~~L~qll~-s~gWr----------------  179 (511)
T TIGR00806       119 QLMEVFYSVTMAARI-AYSSYIFSLVPPSRYQRAAAYSRAAVLLGVFL-SSVLGQLLV-TLGWI----------------  179 (511)
T ss_pred             HHHHHHHHHHHHHHH-HHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHH-hcCch----------------
Confidence            899999999999998 88889999999999999999999999999996 899998843 34411                


Q ss_pred             cCCCCCCcccCCcchHHHHHHHHHHHHHHHHHHHHHhhhchHHH
Q 017754          311 FRDQETPTCLGSICYSITCGIMAGLCIIAMVMSLIVVHRTKSVY  354 (366)
Q Consensus       311 ~~~~~~~~c~g~~~~~~~f~i~~~~~~~~~~~~~~~~~~~r~~~  354 (366)
                                   .|+...++..+...+++++++++....|..|
T Consensus       180 -------------~y~~Ln~Isl~s~~~a~~~a~~LP~~~~sl~  210 (511)
T TIGR00806       180 -------------SYSTLNIISLVFMTFSVFLALFLKRPKRSLF  210 (511)
T ss_pred             -------------hHHHHHHHHHHHHHHHHHHHHhCCCCchhhh
Confidence                         2666677777777777777777765555433

Proteins of the RFC family are so-far restricted to animals. RFC proteins possess 12 putative transmembrane a-helical spanners (TMSs) and evidence for a 12 TMS topology has been published for the human RFC. The RFC transporters appear to transport reduced folate by an energy-dependent, pH-dependent, Na+-independent mechanism. Folate:H+ symport, folate:OH- antiport and folate:anion antiport mechanisms have been proposed, but the energetic mechanism is not well defined.

>PRK15075 citrate-proton symporter; Provisional

Probab=99.22  E-value=5.3e-10  Score=111.20  Aligned_cols=144  Identities=14%  Similarity=0.073  Sum_probs=106.8

Q ss_pred             HHHHHHHHHHhhhhHHHHHhcHHHHHHHhCCChhHH---HHHHH-----HHHHhhhhhhhhhhhhhhhhhccCchhHHHH
Q 017754          138 FLLLFFSLVLASGSGLTVIDNLGQICQSLGYADTSI---YVSMI-----SIWNFLGRVGGGYFSEAIVRKFAYPRPVAMA  209 (366)
Q Consensus       138 ~~ll~~~~~~~~~~~~~~~~~l~~i~~~~g~s~~~~---~vsl~-----~i~~~~g~~~~G~lsD~~grr~~~~R~~~~~  209 (366)
                      .-.++++.++.......+....|++.++++.++.+.   ..+..     .+...+|.++.|+++||+|||+.+      .
T Consensus        17 ~~~~~~~~~~~~~d~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ig~~~~G~l~Dr~Grr~~l------~   90 (434)
T PRK15075         17 ILRVTSGNFLEMFDFFLFGFYATAIAKTFFPAGNEFASLMLTFAVFGAGFLMRPLGAIVLGAYIDRVGRRKGL------I   90 (434)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHHHHhhhHHHHHHHHhhhhchHHHH------H
Confidence            344556667777777778888999999998766442   22222     222246788899999999998766      5


Q ss_pred             HHHHHHHHHHHHHHhh-hhH--------HHHHHHHHHHHHHhhhhhhHHHHHHHhhCCCchhhHHHHHHhhhhhhHHhhh
Q 017754          210 VAQVVMAFALLYYAIG-WPG--------EIYVTTVLVGLSYGAHWAIVPAAASELFGLKSFGALYNFLTLASPAGSLIFS  280 (366)
Q Consensus       210 ~~~~~~~~~~~l~~~~-~~~--------~l~~~~~l~G~~~g~~~~~~~~~~se~f~~~~~g~~~g~~~~~~~~G~~i~g  280 (366)
                      .+.++++++.++.+.. +..        .+++++++.|++.|..++....+++|++|+++|+...++......+|..+ +
T Consensus        91 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~R~l~G~~~g~~~~~~~~~~~e~~p~~~rg~~~~~~~~~~~~g~~~-g  169 (434)
T PRK15075         91 VTLSIMASGTLLIAFVPGYATIGLAAPLLVLLGRLLQGFSAGVELGGVSVYLAEIATPGRKGFYTSWQSASQQVAVVF-A  169 (434)
T ss_pred             HHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHHhhccccccHHHHHHHHHhhCCcccchHHHHHHHHHHHHHHHH-H
Confidence            6666666666665532 222        35778999999999888888899999999999999999998888888875 7


Q ss_pred             hHHHHHHH
Q 017754          281 GVIASGIY  288 (366)
Q Consensus       281 p~l~G~l~  288 (366)
                      +.+++.+.
T Consensus       170 ~~~g~~l~  177 (434)
T PRK15075        170 ALLGYLLN  177 (434)
T ss_pred             HHHHHHHH
Confidence            77776664

>TIGR00805 oat sodium-independent organic anion transporter

Probab=99.22  E-value=6.7e-11  Score=123.16  Aligned_cols=132  Identities=14%  Similarity=0.110  Sum_probs=111.3

Q ss_pred             HHHHhcHHHHHHHhCCChhHH--HHHHHHHHHhhhhhhhhhhhhhhhhhccCchhHHHHHHHHHHHHHHHHHHhhh----
Q 017754          153 LTVIDNLGQICQSLGYADTSI--YVSMISIWNFLGRVGGGYFSEAIVRKFAYPRPVAMAVAQVVMAFALLYYAIGW----  226 (366)
Q Consensus       153 ~~~~~~l~~i~~~~g~s~~~~--~vsl~~i~~~~g~~~~G~lsD~~grr~~~~R~~~~~~~~~~~~~~~~l~~~~~----  226 (366)
                      ..+...++++-+++++++.+.  +.+.+.++..++.++.|++.||++||+.+      .++.++++++.++++.++    
T Consensus        50 g~~~~~l~~iek~F~lss~~~G~i~s~~~i~~~~~~i~v~~~~~r~~r~~~i------~~g~ll~~lg~ll~alphf~~~  123 (633)
T TIGR00805        50 GLVNSSLTTIERRFKLSTSSSGLINGSYEIGNLLLIIFVSYFGTKLHRPIVI------GIGCAIMGLGSFLLSLPHFLSG  123 (633)
T ss_pred             HHHHhhchhhhhhhCCCCCcceeeeehhhHHHHHHHHHHHHhhcccCcceEE------EecHHHHHHHHHHHhChHHhcC
Confidence            344556788888999987776  88899999999999999999999998877      677777777777665331    


Q ss_pred             ------------------------------------------------hHHHHHHHHHHHHHHhhhhhhHHHHHHHhhCC
Q 017754          227 ------------------------------------------------PGEIYVTTVLVGLSYGAHWAIVPAAASELFGL  258 (366)
Q Consensus       227 ------------------------------------------------~~~l~~~~~l~G~~~g~~~~~~~~~~se~f~~  258 (366)
                                                                      ...+++++++.|+|.+..+++..+++.|.+++
T Consensus       124 ~y~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~GiG~~~~~~~~~~~i~d~~~~  203 (633)
T TIGR00805       124 RYSYSTTVSSTGNLSSANSFLCMENLTQALRPTQCPSECQKQHKESLMWLLFLVSQLLRGIGATPIFPLGISYIDDFAKS  203 (633)
T ss_pred             CccccccccccccccccccccccCCCCCCccccccccccccccCCCceehhhHHHHHHHhccCCcchhcCchhhhccCCc
Confidence                                                            12456789999999999999999999999999


Q ss_pred             CchhhHHHHHHhhhhhhHHhhhhHHHHHHHhhh
Q 017754          259 KSFGALYNFLTLASPAGSLIFSGVIASGIYDYY  291 (366)
Q Consensus       259 ~~~g~~~g~~~~~~~~G~~i~gp~l~G~l~d~~  291 (366)
                      ++++...++.+....+|..+ |+.++|++.+..
T Consensus       204 ~~~~~~~~i~~~~~~iG~~l-G~llgg~l~~~~  235 (633)
T TIGR00805       204 KNSPLYIGILESIAVFGPAF-GYLLGSFCLQIY  235 (633)
T ss_pred             cccHHHHHHHHHHHHhhhHH-HHHHHHHHHhcc
Confidence            99999999999999999996 999999988654

Proteins of the OAT family catalyze the Na+-independent facilitated transport of organic anions such as bromosulfobromophthalein and prostaglandins as well as conjugated and unconjugated bile acids (taurocholate and cholate, respectively). These transporters have been characterized in mammals, but homologues are present in C. elegans and A. thaliana. Some of the mammalian proteins exhibit a high degree of tissue specificity. For example, the rat OAT is found at high levels in liver and kidney and at lower levels in other tissues. These proteins possess 10-12 putative a-helical transmembrane spanners. They may catalyze electrogenic anion uniport or anion exchange.

>COG2807 CynX Cyanate permease [Inorganic ion transport and metabolism]

Probab=99.21  E-value=1.2e-09  Score=103.68  Aligned_cols=181  Identities=13%  Similarity=0.054  Sum_probs=131.7

Q ss_pred             CHHHHhhhhhHHHHHHHHHHhhhhHHHHHhcHHHHHHHhCCChhHH--HHHHHHHHHhhhhhhhhhhhhhhhhhccCchh
Q 017754          128 TLPQALMKADFLLLFFSLVLASGSGLTVIDNLGQICQSLGYADTSI--YVSMISIWNFLGRVGGGYFSEAIVRKFAYPRP  205 (366)
Q Consensus       128 ~~~~~l~~~~~~ll~~~~~~~~~~~~~~~~~l~~i~~~~g~s~~~~--~vsl~~i~~~~g~~~~G~lsD~~grr~~~~R~  205 (366)
                      +-...++++.-|.+.+.+.+.....+..+.|+|+|..+.|+|..+.  .+++..+......++.-.+.+|...+    |+
T Consensus       200 ~~~~vw~~~~aW~vtLfmGlqS~~~Y~~~~WLP~ili~~G~sa~~aG~llsl~~l~~~~~~ll~P~la~R~~n~----r~  275 (395)
T COG2807         200 SVRKVWRSPLAWQVTLFMGLQSLLYYIVIGWLPAILIDRGLSAAEAGSLLSLMQLAQLPTALLIPLLARRSKNQ----RP  275 (395)
T ss_pred             cccccccCchhHHHHHHHHhhHHHHHHHHHHHHHHHHHcCCCHHHhhhHHHHHHHHHHHHHHHHHHHHHHhccc----ch
Confidence            3455789999998888888888888999999999999999998876  89999999999999999998884332    22


Q ss_pred             HHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHhhhhhhHHHHHHHhhCCCc-hhhHHHHHHhhhhhhHHhhhhHHH
Q 017754          206 VAMAVAQVVMAFALLYYAIGWPGEIYVTTVLVGLSYGAHWAIVPAAASELFGLKS-FGALYNFLTLASPAGSLIFSGVIA  284 (366)
Q Consensus       206 ~~~~~~~~~~~~~~~l~~~~~~~~l~~~~~l~G~~~g~~~~~~~~~~se~f~~~~-~g~~~g~~~~~~~~G~~i~gp~l~  284 (366)
                      .. .....++.+|...+........+...++.|+|.|+.+++.-..+.+-....+ .+...|+....+.+=+.+ ||.+.
T Consensus       276 ~~-~~~~~~~l~G~~G~~~~P~~~~~lw~~llG~G~G~~F~laL~li~~rs~~a~~Aa~LSgmaQg~GYllAa~-GP~l~  353 (395)
T COG2807         276 LV-VLALLLMLVGLVGLLLAPGQLPILWALLLGLGQGGAFPLALTLILLRSSDAAIAAALSGMAQGVGYLLAAF-GPWLF  353 (395)
T ss_pred             HH-HHHHHHHHHHHHHHHHhhhhHHHHHHHHHhCccchHHHHHHHHHHhhcCChHHHHHHHHHhhhhhHHHHhh-hhhhH
Confidence            22 3333344444433332222222223588999999999998888887765443 566667766666666664 99999


Q ss_pred             HHHHhhhhhhhhhhhhhccCCCCCcccCCCCCCcccCCcchHHHHHHHHHHHHHHHHHHHH
Q 017754          285 SGIYDYYAEKQAGLLWKYNGNMLPVSFRDQETPTCLGSICYSITCGIMAGLCIIAMVMSLI  345 (366)
Q Consensus       285 G~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~g~~~~~~~f~i~~~~~~~~~~~~~~  345 (366)
                      |++.|.++                               +|+..++..+.+.++..+..+.
T Consensus       354 G~lhDa~g-------------------------------sw~~~~~~l~~~~i~m~i~Gl~  383 (395)
T COG2807         354 GFLHDATG-------------------------------SWSAPLVLLALATLLMLIFGLR  383 (395)
T ss_pred             hHHHHhcC-------------------------------ChHHHHHHHHHHHHHHHHHHhh
Confidence            99999998                               5999988777666655554433

>PRK06814 acylglycerophosphoethanolamine acyltransferase; Provisional

Probab=99.21  E-value=3.4e-10  Score=125.54  Aligned_cols=159  Identities=9%  Similarity=0.047  Sum_probs=108.0

Q ss_pred             HHhhhhhHHHHHHHHHHhhhhHHHHHhcHH-----HHHHHhCCChhHH---HHHHHHHHHhhhhhhhhhhhhhhhhhccC
Q 017754          131 QALMKADFLLLFFSLVLASGSGLTVIDNLG-----QICQSLGYADTSI---YVSMISIWNFLGRVGGGYFSEAIVRKFAY  202 (366)
Q Consensus       131 ~~l~~~~~~ll~~~~~~~~~~~~~~~~~l~-----~i~~~~g~s~~~~---~vsl~~i~~~~g~~~~G~lsD~~grr~~~  202 (366)
                      ..+++++|+.++++.+++..........++     ++..+.+.+....   ..+++.+...+..+++|+++||++||+.+
T Consensus         6 ~l~~~~~f~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~l~~~~~G~laDr~~rk~~~   85 (1140)
T PRK06814          6 YLMKSRRFAPLFWTQFFGAFNDNFLKNALVILILYGLSGALGAYNNALVTLAGAVFILPFFIFSALAGQLADKYDKAKLA   85 (1140)
T ss_pred             hhhhccccHHHHHHHHHhHHHHHHHHHHHHHHHHHHhccccccchHHHHHHHHHHHHHHHHHHhhhHHhhhhhccHHHHH
Confidence            355666777666666555444322222211     1112222222221   45566777888999999999999998754


Q ss_pred             chhHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHhhhhhhHHHHHHHhhCCCchhhHHHHHHhhhhhhHHhhhhH
Q 017754          203 PRPVAMAVAQVVMAFALLYYAIGWPGEIYVTTVLVGLSYGAHWAIVPAAASELFGLKSFGALYNFLTLASPAGSLIFSGV  282 (366)
Q Consensus       203 ~R~~~~~~~~~~~~~~~~l~~~~~~~~l~~~~~l~G~~~g~~~~~~~~~~se~f~~~~~g~~~g~~~~~~~~G~~i~gp~  282 (366)
                      ..  ...+..+++..+.+.+...+.+.+++++++.|++.+..++...+++.++++.+.++.+.++.+++..+|..+ ||.
T Consensus        86 ~~--~~~~~~~~~~~~~~~~~~~s~~~l~~~~~l~gi~~a~~~p~~~a~l~~~~~~~~~~~a~~~~~~~~~ig~~i-gp~  162 (1140)
T PRK06814         86 KI--LKFAEIGIAALAIYGFHLNSVPLLFAALFLMGIHSALFGPIKYSILPDHLNKDELLGANALVEAGTFIAILL-GTI  162 (1140)
T ss_pred             HH--HHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhhchHHHHhhHhhcCccccchhhHHHHHHHHHHHHH-HHH
Confidence            11  111222222222222233566788899999999999989999999999999999999999999999999996 999


Q ss_pred             HHHHHHhhhh
Q 017754          283 IASGIYDYYA  292 (366)
Q Consensus       283 l~G~l~d~~~  292 (366)
                      ++|++.+..+
T Consensus       163 l~g~l~~~~~  172 (1140)
T PRK06814        163 IGGLATISGN  172 (1140)
T ss_pred             HHHHHHhccc
Confidence            9999998766

>PRK10133 L-fucose transporter; Provisional

Probab=99.20  E-value=1.4e-09  Score=108.55  Aligned_cols=145  Identities=14%  Similarity=0.033  Sum_probs=115.3

Q ss_pred             hHHHHHHHHHHhhhhHHHHHhcHHHHHHHhCCChhHH--HHHHHHHHHhhhhhhhhhhhhhhhhhccCchhHHHHHHHHH
Q 017754          137 DFLLLFFSLVLASGSGLTVIDNLGQICQSLGYADTSI--YVSMISIWNFLGRVGGGYFSEAIVRKFAYPRPVAMAVAQVV  214 (366)
Q Consensus       137 ~~~ll~~~~~~~~~~~~~~~~~l~~i~~~~g~s~~~~--~vsl~~i~~~~g~~~~G~lsD~~grr~~~~R~~~~~~~~~~  214 (366)
                      .++++++.++............+|++.+++|.+..+.  ..+.+.++..++.+..|+++||+|||+..      ..+.++
T Consensus        27 ~~~~~~~~~~~~~~~~~~~~~~~p~i~~~~~~s~~~~gl~~~~~~~g~~i~~~~~g~l~dr~G~r~~l------~~g~~~  100 (438)
T PRK10133         27 PFALLCSLFFLWAVANNLNDILLPQFQQAFTLTNFQAGLIQSAFYFGYFIIPIPAGILMKKLSYKAGI------ITGLFL  100 (438)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcHHHH------HHHHHH
Confidence            4566666666666666666777899988999988776  78888999999999999999999998776      777777


Q ss_pred             HHHHHHHHH----hhhhHHHHHHHHHHHHHHhhhhhhHHHHHHHhhCCCchhhHHHHHHhhhhhhHHhhhhHHHHHHH
Q 017754          215 MAFALLYYA----IGWPGEIYVTTVLVGLSYGAHWAIVPAAASELFGLKSFGALYNFLTLASPAGSLIFSGVIASGIY  288 (366)
Q Consensus       215 ~~~~~~l~~----~~~~~~l~~~~~l~G~~~g~~~~~~~~~~se~f~~~~~g~~~g~~~~~~~~G~~i~gp~l~G~l~  288 (366)
                      ++++.+++.    ..+...+++++++.|+|.|...+.....+.+..+.++++...++......+|..+ +|.+++.+.
T Consensus       101 ~~~~~~l~~~~~~a~~~~~ll~~r~l~G~g~g~~~~~~~~~v~~~~~~~~~~~~~s~~~~~~~~G~~~-g~~~g~~l~  177 (438)
T PRK10133        101 YALGAALFWPAAEIMNYTLFLVGLFIIAAGLGCLETAANPFVTVLGPESSGHFRLNLAQTFNSFGAII-AVVFGQSLI  177 (438)
T ss_pred             HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHhhHHHHHHHhCChhhHHHHHHHHHHHHHHHHHH-HHHHHHHHH
Confidence            777776642    2345577889999999999999988888888766666666789999999999996 888877654

>PRK10213 nepI ribonucleoside transporter; Reviewed

Probab=99.19  E-value=3e-09  Score=104.60  Aligned_cols=157  Identities=8%  Similarity=0.030  Sum_probs=106.3

Q ss_pred             CHHHHhhhhhHHHHHHHHHHhhhhHHHHHhcH-HHHHHHhCCChhHH--HHHHHHHHHhhhhhhhhhhhhhhhhhccCch
Q 017754          128 TLPQALMKADFLLLFFSLVLASGSGLTVIDNL-GQICQSLGYADTSI--YVSMISIWNFLGRVGGGYFSEAIVRKFAYPR  204 (366)
Q Consensus       128 ~~~~~l~~~~~~ll~~~~~~~~~~~~~~~~~l-~~i~~~~g~s~~~~--~vsl~~i~~~~g~~~~G~lsD~~grr~~~~R  204 (366)
                      +.++.++++.+|...+..++..........++ |.+.+++|++....  ..+...+++.+|+++.|++.||.+++     
T Consensus       208 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~g~s~~~~g~~~~~~~~~~iig~~~~~~l~~r~~~~-----  282 (394)
T PRK10213        208 NTFRLLQRPGVMAGMIAIFMSFAGQFAFFTYIRPVYMNLAGFGVDGLTLVLLSFGIASFVGTSLSSFILKRSVKL-----  282 (394)
T ss_pred             HHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChhHHHHHHHHHHHHHHHHHHHHHHHHhccchh-----
Confidence            35678889999987666555544444444454 66777789887654  56777788888888888888874322     


Q ss_pred             hHHHHHHHHHHHHHHHHHH-hhhhHHHHHHHHHHHHHHhhhhhhHHHHHHHhhCCCchhhHHHHHHhhhhhhHHhhhhHH
Q 017754          205 PVAMAVAQVVMAFALLYYA-IGWPGEIYVTTVLVGLSYGAHWAIVPAAASELFGLKSFGALYNFLTLASPAGSLIFSGVI  283 (366)
Q Consensus       205 ~~~~~~~~~~~~~~~~l~~-~~~~~~l~~~~~l~G~~~g~~~~~~~~~~se~f~~~~~g~~~g~~~~~~~~G~~i~gp~l  283 (366)
                       .......+..+.++++.. ..+...+++..++.|++++...+...+.+.+..+ ++.+...+.......+|..+ ||.+
T Consensus       283 -~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~G~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~lg~~~-G~~l  359 (394)
T PRK10213        283 -ALAGAPLVLAVSALVLTLWGSDKIVATGVAIIWGLTFALVPVGWSTWITRSLA-DQAEKAGSIQVAVIQLANTC-GAAI  359 (394)
T ss_pred             -HHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHhhhHHHHHHHHHHCc-ccHHHHHHHHHHHHHHHHHH-HHHH
Confidence             112222232333333322 2344556667778898888877777777777775 55667777777777888886 9999


Q ss_pred             HHHHHhhhh
Q 017754          284 ASGIYDYYA  292 (366)
Q Consensus       284 ~G~l~d~~~  292 (366)
                      +|+++|..+
T Consensus       360 ~G~l~~~~g  368 (394)
T PRK10213        360 GGYALDNIG  368 (394)
T ss_pred             HHHHHhccC
Confidence            999999876

>TIGR00898 2A0119 cation transport protein

Probab=99.19  E-value=1.5e-10  Score=117.14  Aligned_cols=145  Identities=17%  Similarity=0.131  Sum_probs=115.3

Q ss_pred             cHHHHHHHhCCC---hhHH--HHHHHHHHHhhhhhhhhhhhhhhhhhccCchhHHHHHHHHHHHHHHHHHH-hhhhHHHH
Q 017754          158 NLGQICQSLGYA---DTSI--YVSMISIWNFLGRVGGGYFSEAIVRKFAYPRPVAMAVAQVVMAFALLYYA-IGWPGEIY  231 (366)
Q Consensus       158 ~l~~i~~~~g~s---~~~~--~vsl~~i~~~~g~~~~G~lsD~~grr~~~~R~~~~~~~~~~~~~~~~l~~-~~~~~~l~  231 (366)
                      ..+.+.++++.+   ....  ..+++.++..+|.++.|+++||+|||+.+      .++.++.+++.++.+ ..+...++
T Consensus       111 ~~~~i~~e~~l~c~~~~~~~~~~s~~~~g~~~g~~~~g~l~Dr~Grr~~~------~~~~~~~~i~~~~~~~~~~~~~~~  184 (505)
T TIGR00898       111 FSSTIVTEWDLVCEDAWKVDLTQSCFFVGVLLGSFVFGYLSDRFGRKKVL------LLSTLVTAVSGVLTAFSPNYTVFL  184 (505)
T ss_pred             ccccEEEEecceechHHHHHHHHHHHHHHHHHHHHhHHHhhhhccchHHH------HHHHHHHHHHHHHHHHcccHHHHH
Confidence            456777888886   4433  88899999999999999999999998655      556666666665554 34566788


Q ss_pred             HHHHHHHHHHhhhhhhHHHHHHHhhCCCchhhHHHHHHhhhhhhHHhhhhHHHHHHHhhhhhhhhhhhhhccCCCCCccc
Q 017754          232 VTTVLVGLSYGAHWAIVPAAASELFGLKSFGALYNFLTLASPAGSLIFSGVIASGIYDYYAEKQAGLLWKYNGNMLPVSF  311 (366)
Q Consensus       232 ~~~~l~G~~~g~~~~~~~~~~se~f~~~~~g~~~g~~~~~~~~G~~i~gp~l~G~l~d~~~~~~~~~~~~~~~~~~~~~~  311 (366)
                      +.+++.|++.++.++...++++|+++.++|+...++..++..+|..+ +|.+++.+.   .                   
T Consensus       185 ~~r~l~G~~~~~~~~~~~~~~~e~~~~~~r~~~~~~~~~~~~~g~~~-~~~~~~~~~---~-------------------  241 (505)
T TIGR00898       185 VFRLLVGMGIGGIWVQAVVLNTEFLPKKQRAIVGTLIQVFFSLGLVL-LPLVAYFIP---D-------------------  241 (505)
T ss_pred             HHHHHHHhhccchHHHHHHHhheecChhhhHHHHHHHHHHHHHHHHH-HHHHHHHhh---H-------------------
Confidence            88999999999999999999999999999999999998888888885 777765542   2                   


Q ss_pred             CCCCCCcccCCcchHHHHHHHHHHHHHHHHHHH
Q 017754          312 RDQETPTCLGSICYSITCGIMAGLCIIAMVMSL  344 (366)
Q Consensus       312 ~~~~~~~c~g~~~~~~~f~i~~~~~~~~~~~~~  344 (366)
                                   ||+.|++.++.+++..+..+
T Consensus       242 -------------wr~~~~~~~i~~~~~~~~~~  261 (505)
T TIGR00898       242 -------------WRWLQLAVSLPTFLFFLLSW  261 (505)
T ss_pred             -------------HHHHHHHHHHHHHHHHHHHH
Confidence                         89999988877776665553

>PRK15011 sugar efflux transporter B; Provisional

Probab=99.18  E-value=2.3e-09  Score=105.17  Aligned_cols=176  Identities=11%  Similarity=0.031  Sum_probs=110.3

Q ss_pred             hhhHHHHHHHHHHhhhhHHHHHhcHHHH-HHHhCCChhHH--HHHHHHH-HHhhhhhhhhhhhhhhhhhccCchhHHHHH
Q 017754          135 KADFLLLFFSLVLASGSGLTVIDNLGQI-CQSLGYADTSI--YVSMISI-WNFLGRVGGGYFSEAIVRKFAYPRPVAMAV  210 (366)
Q Consensus       135 ~~~~~ll~~~~~~~~~~~~~~~~~l~~i-~~~~g~s~~~~--~vsl~~i-~~~~g~~~~G~lsD~~grr~~~~R~~~~~~  210 (366)
                      |...|.+++..++.......+...+|.+ .+++|.+.++.  .++...+ ...++.+.+|+ +||+|||+..     +..
T Consensus        14 ~~~~~~~~~~~~~~~~~~~~~~p~~~~~l~~~~~~s~~~~g~~~~~~~~~~~~~~~~~~~~-~dr~g~r~~~-----~~~   87 (393)
T PRK15011         14 DLTSTAFLIVAFLTGIAGALQTPTLSIFLTDEVHARPAMVGFFFTGSAVIGILVSQFLAGR-SDKRGDRKSL-----IVF   87 (393)
T ss_pred             cchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHHHHHHHHH-HhcccchhHH-----HHH
Confidence            3446666666666655555555666665 46789988776  3444445 44455555666 9999987643     233


Q ss_pred             HHHHHHHHHHHHHhh-hhHHHHHHHHHHHHHHhhhhhhHHHHHHHhhCCCch--hhHHHHHHhhhhhhHHhhhhHHHHHH
Q 017754          211 AQVVMAFALLYYAIG-WPGEIYVTTVLVGLSYGAHWAIVPAAASELFGLKSF--GALYNFLTLASPAGSLIFSGVIASGI  287 (366)
Q Consensus       211 ~~~~~~~~~~l~~~~-~~~~l~~~~~l~G~~~g~~~~~~~~~~se~f~~~~~--g~~~g~~~~~~~~G~~i~gp~l~G~l  287 (366)
                      +.++.+++..+++.. +...+++...+.+...+...+....++.+..+.+.+  +...++.+++.++|..+ ||.++|++
T Consensus        88 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lg~~~-g~~i~~~l  166 (393)
T PRK15011         88 CCLLGVLACTLFAWNRNYFVLLFVGVFLSSFGSTANPQMFALAREHADKTGREAVMFSSFLRAQVSLAWVI-GPPLAYAL  166 (393)
T ss_pred             HHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhhhccchHHHHHHHHHHHHHHHHHH-hhHHHHHH
Confidence            334444444444432 333333343344333344556666677776665544  33447888889999996 99999999


Q ss_pred             HhhhhhhhhhhhhhccCCCCCcccCCCCCCcccCCcchHHHHHHHHHHHHHHHHHHHHHhhh
Q 017754          288 YDYYAEKQAGLLWKYNGNMLPVSFRDQETPTCLGSICYSITCGIMAGLCIIAMVMSLIVVHR  349 (366)
Q Consensus       288 ~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~g~~~~~~~f~i~~~~~~~~~~~~~~~~~~  349 (366)
                      .+..+                                |+..|++.++.+++.++..+...++
T Consensus       167 ~~~~g--------------------------------w~~~f~~~~~~~~~~~~~~~~~~~~  196 (393)
T PRK15011        167 AMGFS--------------------------------FTVMYLSAAVAFIVCGVMVWLFLPS  196 (393)
T ss_pred             HHhcC--------------------------------hHHHHHHHHHHHHHHHHHHHhhcCc
Confidence            98876                                9999999888777766655554443

>PRK10054 putative transporter; Provisional

Probab=99.18  E-value=4.8e-10  Score=110.22  Aligned_cols=156  Identities=9%  Similarity=-0.050  Sum_probs=105.1

Q ss_pred             HHHHhhhhhHHHHHHHHHHhhhhHHHHHhcHHHHHHH---hCCChhHH--HHHHHHHHHhhhhhhhhhhhhhhhhhccCc
Q 017754          129 LPQALMKADFLLLFFSLVLASGSGLTVIDNLGQICQS---LGYADTSI--YVSMISIWNFLGRVGGGYFSEAIVRKFAYP  203 (366)
Q Consensus       129 ~~~~l~~~~~~ll~~~~~~~~~~~~~~~~~l~~i~~~---~g~s~~~~--~vsl~~i~~~~g~~~~G~lsD~~grr~~~~  203 (366)
                      .++.++++.+|.+.+..++.......+..+.+.+...   .+.+....  +.+...+.....++..|+++||.++|+.. 
T Consensus       199 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~~l-  277 (395)
T PRK10054        199 PSVLLQDKALLWFTCSGFLASFVSGAFASCISQYVMVVADSDFAEKVVAVVLPVNAAMVVSLQYSVGRRLNAANIRPLM-  277 (395)
T ss_pred             hhhhccCceehHHHHHHHHHHHHHHHhhhhHHHHHHHhcccchHHHHHHHHHHhhhhheeeehhHHHHHHccCCchhHH-
Confidence            3567788888877766666555444444556666543   23333222  44444445555667778888988776543 


Q ss_pred             hhHHHHHHHHHHHHHHHHHHh--hhhHHHHHHHHHHHHHHhhhhhhHHHHHHHhhCCCchhhHHHHHHhhhhhhHHhhhh
Q 017754          204 RPVAMAVAQVVMAFALLYYAI--GWPGEIYVTTVLVGLSYGAHWAIVPAAASELFGLKSFGALYNFLTLASPAGSLIFSG  281 (366)
Q Consensus       204 R~~~~~~~~~~~~~~~~l~~~--~~~~~l~~~~~l~G~~~g~~~~~~~~~~se~f~~~~~g~~~g~~~~~~~~G~~i~gp  281 (366)
                           ..+.++++++.+.+..  .+...+.+..++.|+|.+...+...+.+.+..|++.+|+.++..+ ...+|..+ ||
T Consensus       278 -----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~p~~~~~~~~~~p~~~~~~~~~~~~-~~~~G~~~-Gp  350 (395)
T PRK10054        278 -----TAGTLCFVIGLVGFIFSGNSLLLWGMSAAVFTVGEIIYAPGEYMLIDHIAPPGMKASYFSAQS-LGWLGAAI-NP  350 (395)
T ss_pred             -----HHHHHHHHHHHHHHHHcchHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhCCcccceehHhHHH-HHHHHHHH-HH
Confidence                 5556666666655543  233345566778888887777777788889999899999988765 45578886 99


Q ss_pred             HHHHHHHhhhh
Q 017754          282 VIASGIYDYYA  292 (366)
Q Consensus       282 ~l~G~l~d~~~  292 (366)
                      .++|+++|+.+
T Consensus       351 ~~~G~l~~~~g  361 (395)
T PRK10054        351 LVSGVILTTLP  361 (395)
T ss_pred             HHHHHHHHHcC
Confidence            99999999987

>COG3104 PTR2 Dipeptide/tripeptide permease [Amino acid transport and metabolism]

Probab=99.17  E-value=3.4e-10  Score=111.51  Aligned_cols=170  Identities=21%  Similarity=0.303  Sum_probs=131.4

Q ss_pred             HHHHHHHHHHhhhhHHHHHhcHHHHH-HH----hCCChhHH--HHHHHHHHHhhhhhhhhhhhhhh-hhhccCchhHHHH
Q 017754          138 FLLLFFSLVLASGSGLTVIDNLGQIC-QS----LGYADTSI--YVSMISIWNFLGRVGGGYFSEAI-VRKFAYPRPVAMA  209 (366)
Q Consensus       138 ~~ll~~~~~~~~~~~~~~~~~l~~i~-~~----~g~s~~~~--~vsl~~i~~~~g~~~~G~lsD~~-grr~~~~R~~~~~  209 (366)
                      +|.++..-++=-++.+++-..+-.+. .+    +|++++++  ..+.+...-.+..+++||++||+ |+|+..      .
T Consensus        23 l~~if~vE~WERFsyYGmraiL~~Yl~~~~~~gLg~~~~~A~~l~~~y~slVY~t~i~GG~laDr~LG~~~tI------~   96 (498)
T COG3104          23 LYLIFFVELWERFSYYGMRAILILYLYYQLGDGLGFDETHATGLFSAYGSLVYLTPIIGGWLADRVLGTRRTI------V   96 (498)
T ss_pred             HHHHHHHHHHHHHhhhhhHHHHHHHHHHhccccCCcChHhhHHHHHHHHHHHHHHHHHHHHHHHHhcchhHHH------H
Confidence            55555544444444443333333332 23    45887766  77778778888899999999997 887776      8


Q ss_pred             HHHHHHHHHHHHHHhh---hhHHHHHHHHHHHHHHhhhhhhHHHHHHHhhCCCc--hhhHHHHHHhhhhhhHHhhhhHHH
Q 017754          210 VAQVVMAFALLYYAIG---WPGEIYVTTVLVGLSYGAHWAIVPAAASELFGLKS--FGALYNFLTLASPAGSLIFSGVIA  284 (366)
Q Consensus       210 ~~~~~~~~~~~l~~~~---~~~~l~~~~~l~G~~~g~~~~~~~~~~se~f~~~~--~g~~~g~~~~~~~~G~~i~gp~l~  284 (366)
                      ++.+++.+|+++++..   .+..++++.++.++|.|..=+....+++|+++++.  |-..+++.+++.++|+++ +|++.
T Consensus        97 lGail~~iGh~~L~~~~~~~~~gl~i~L~~I~iG~Gl~K~NiS~llg~ly~~~DprrD~gFt~fY~~iNiGsl~-~p~i~  175 (498)
T COG3104          97 LGAILMAIGHLVLAISSVSGPGGLYIGLALIIVGTGLFKPNISSLLGELYPKDDPRRDGGFTLFYMGINIGSLI-APIIT  175 (498)
T ss_pred             HHHHHHHHHHHHHhccccccccHHHHHHHHHHhccccccccHHHHHHHhcCCCCcccCCCccEEEEEeehHHHH-HHHHH
Confidence            8999999999999854   46688999999999999998998999999999764  777889999999999996 99999


Q ss_pred             HHHHhhhhhhhhhhhhhccCCCCCcccCCCCCCcccCCcchHHHHHHHHHHHHHHHHHHHHH
Q 017754          285 SGIYDYYAEKQAGLLWKYNGNMLPVSFRDQETPTCLGSICYSITCGIMAGLCIIAMVMSLIV  346 (366)
Q Consensus       285 G~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~g~~~~~~~f~i~~~~~~~~~~~~~~~  346 (366)
                      +++.+..+                                |..+|.+.++-..++.+..+..
T Consensus       176 ~~~~~~~g--------------------------------~~~gF~~aavGm~~gl~~f~~~  205 (498)
T COG3104         176 GLLAINYG--------------------------------WHVGFGLAAVGMIIGLVIFLLG  205 (498)
T ss_pred             HHHHHhhC--------------------------------HHHHHHHHHHHHHHHHHHHHHc
Confidence            99999887                                9999988877666666554443

>TIGR00902 2A0127 phenyl proprionate permease family protein

Probab=99.17  E-value=1.5e-09  Score=106.15  Aligned_cols=147  Identities=16%  Similarity=0.147  Sum_probs=104.7

Q ss_pred             HHHHHHHHHhhhhHHHHHhcHHHHHHHhCCChhHH--HHHHHHHHHhhhhhhhhhhhhhhhhhccCchhHHHHHHHHHHH
Q 017754          139 LLLFFSLVLASGSGLTVIDNLGQICQSLGYADTSI--YVSMISIWNFLGRVGGGYFSEAIVRKFAYPRPVAMAVAQVVMA  216 (366)
Q Consensus       139 ~ll~~~~~~~~~~~~~~~~~l~~i~~~~g~s~~~~--~vsl~~i~~~~g~~~~G~lsD~~grr~~~~R~~~~~~~~~~~~  216 (366)
                      |.+.+.+++.......+...+|.+.+++|++..++  ..+...+...++.+++|+++||++|+... +... .++..+..
T Consensus         7 ~~l~~~~~~~~~~~~~~~p~l~~~l~~~g~s~~~ig~~~s~~~~~~~~~~~~~g~l~d~~~~~~~~-~~~~-~~~~~l~~   84 (382)
T TIGR00902         7 RWLALGFFGYFCAYGIFLPFFPAWLKGIGLGEEMIGLLIGAALIARFAGGLFFAPLIKDANHIIIA-LRLL-ALASAIFA   84 (382)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHH-HHHH-HHHHHHHH
Confidence            43445555555554556778999999999998877  78888999999999999999999875332 1111 11221222


Q ss_pred             HHHHHHH-hhhhHHHHHHHHHHHHHHhhhhhhHHHHHHHhhCCCchhhHHHHHHhhhhhhHHhhhhHHHHHHHhhhh
Q 017754          217 FALLYYA-IGWPGEIYVTTVLVGLSYGAHWAIVPAAASELFGLKSFGALYNFLTLASPAGSLIFSGVIASGIYDYYA  292 (366)
Q Consensus       217 ~~~~l~~-~~~~~~l~~~~~l~G~~~g~~~~~~~~~~se~f~~~~~g~~~g~~~~~~~~G~~i~gp~l~G~l~d~~~  292 (366)
                      +  .+.. ..+.+.+++..++.|.+.+...+...+++.+ + .++++..+|.......+|..+ +|+++|++.+..+
T Consensus        85 ~--~~~~~~~~~~~l~~~~~l~~~~~~~~~p~~~al~~~-~-~~~~~~~~g~~~~~~slG~~~-g~~l~g~l~~~~g  156 (382)
T TIGR00902        85 A--AFSAGAHNAWLLFIAIGLFALFFSAGMPIGDALANT-W-QKQFGLDYGKVRLIGSAAFII-GSALFGGLIGMFD  156 (382)
T ss_pred             H--HHHHhhhhHHHHHHHHHHHHHHHccchhHHHHHHHH-H-HHHcCCCccHHHHHHHHHHHH-HHHHHHHHHHHcC
Confidence            1  1222 3345566677777888777767776666654 3 577899999999999999996 9999999999887

This family of proteins is involved in the uptake of 3-phenylpropionic acid. This uptake mechanism is for the metabolism of phenylpropanoid compounds and plays an important role in the natural degradative cycle of these aromatic molecules.

>KOG3764 consensus Vesicular amine transporter [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.17  E-value=1.2e-10  Score=111.38  Aligned_cols=139  Identities=16%  Similarity=0.170  Sum_probs=124.4

Q ss_pred             HHHHHHHHHhhhhhhhhhhhhhhhhhccCchhHHHHHHHHHHHHHHHHHHhhh-hHHHHHHHHHHHHHHhhhhhhHHHHH
Q 017754          174 YVSMISIWNFLGRVGGGYFSEAIVRKFAYPRPVAMAVAQVVMAFALLYYAIGW-PGEIYVTTVLVGLSYGAHWAIVPAAA  252 (366)
Q Consensus       174 ~vsl~~i~~~~g~~~~G~lsD~~grr~~~~R~~~~~~~~~~~~~~~~l~~~~~-~~~l~~~~~l~G~~~g~~~~~~~~~~  252 (366)
                      +.+...+.+.+..++.|.+.||+|+|..+      .+++.+|....+++++.+ ...+++++.+.|+|....++...+++
T Consensus       111 LFaskA~~qllvnp~~G~l~~~iGy~ipm------~~Gl~vmf~sTilFafg~sy~~l~vAR~LQgvgsA~~~tsglaml  184 (464)
T KOG3764|consen  111 LFASKALVQLLVNPFFGNLIDRIGYKIPM------VAGLFVMFLSTILFAFGNSYPMLFVARSLQGVGSAFADTSGLAML  184 (464)
T ss_pred             HHHHHHHHHHHhcccchhhHHHhccccHH------HHHHHHHHHHHHHHHHcchhHHHHHHHHHhhhhHHHHHhhhHHHH
Confidence            77788889999999999999999987665      899999999999998654 45788999999999999999999999


Q ss_pred             HHhhCCCc-hhhHHHHHHhhhhhhHHhhhhHHHHHHHhhhhhhhhhhhhhccCCCCCcccCCCCCCcccCCcchHHHHHH
Q 017754          253 SELFGLKS-FGALYNFLTLASPAGSLIFSGVIASGIYDYYAEKQAGLLWKYNGNMLPVSFRDQETPTCLGSICYSITCGI  331 (366)
Q Consensus       253 se~f~~~~-~g~~~g~~~~~~~~G~~i~gp~l~G~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~g~~~~~~~f~i  331 (366)
                      +|.|+.++ ||.+.|+......+|..+ ||+.+|.+||..|                                ++..|.+
T Consensus       185 Ad~f~~d~er~~vmGialgfislG~lv-gPpfGGilYe~~G--------------------------------k~aPFlV  231 (464)
T KOG3764|consen  185 ADVFPEDNERGSVMGIALGFISLGVLV-GPPFGGILYEFAG--------------------------------KSAPFLV  231 (464)
T ss_pred             HHHcccchhhhHHHHHHHHHHhcccee-cCCcccchHhhcC--------------------------------CcCcHHH
Confidence            99999886 799999999999999997 9999999999988                                8999999


Q ss_pred             HHHHHHHHHHHHHHHhhhch
Q 017754          332 MAGLCIIAMVMSLIVVHRTK  351 (366)
Q Consensus       332 ~~~~~~~~~~~~~~~~~~~r  351 (366)
                      +++++++...+.+++...++
T Consensus       232 L~~v~Lld~~L~l~vi~p~~  251 (464)
T KOG3764|consen  232 LAIVLLLDGALQLLVIEPTE  251 (464)
T ss_pred             HHHHHHHHHHHHHheeCccc
Confidence            99999998888887766544

>PRK08633 2-acyl-glycerophospho-ethanolamine acyltransferase; Validated

Probab=99.16  E-value=1.1e-09  Score=121.26  Aligned_cols=152  Identities=14%  Similarity=0.136  Sum_probs=109.8

Q ss_pred             HhhhhhHHHHHHHHHHhhhhHHHHHh-cHHHHHHHhCCChhHH----HHHHHHHHHhhhhhhhhhhhhhhhhhccCchhH
Q 017754          132 ALMKADFLLLFFSLVLASGSGLTVID-NLGQICQSLGYADTSI----YVSMISIWNFLGRVGGGYFSEAIVRKFAYPRPV  206 (366)
Q Consensus       132 ~l~~~~~~ll~~~~~~~~~~~~~~~~-~l~~i~~~~g~s~~~~----~vsl~~i~~~~g~~~~G~lsD~~grr~~~~R~~  206 (366)
                      .+++..|+.++++.++.......+.. ..+.+..+++.+....    ..+++.+...++.+++|+++||+|||+.+    
T Consensus         5 ~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~G~l~Dr~grk~~l----   80 (1146)
T PRK08633          5 LLKIIGFLPLLLTQFLNAFNDLGHKILIQNTLIKAYDGSEQVILTAIVNALFLLPFLLLSSPAGFLADKFSKNRVI----   80 (1146)
T ss_pred             hhhhhhhHHHHHHHHHhHHHHHHHHHHHHHHHHHHcCcccHHHHHHHHHHHHHHHHHHHhhhHhhhcccccHHHHH----
Confidence            45667787777666665444333322 2333445566554332    56777888889999999999999998765    


Q ss_pred             HHHHHHHHHHHHHHH---H-HhhhhHHHHHHHHHHHHHHhhhhhhHHHHHHHhhCCCchhhHHHHHHhhhhhhHHhhhhH
Q 017754          207 AMAVAQVVMAFALLY---Y-AIGWPGEIYVTTVLVGLSYGAHWAIVPAAASELFGLKSFGALYNFLTLASPAGSLIFSGV  282 (366)
Q Consensus       207 ~~~~~~~~~~~~~~l---~-~~~~~~~l~~~~~l~G~~~g~~~~~~~~~~se~f~~~~~g~~~g~~~~~~~~G~~i~gp~  282 (366)
                        ..+.++.++..++   . ...+...+++++++.|++.+...+...++++|+++.++++.+.++..++..+|..+ ||.
T Consensus        81 --~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~ig~~l-g~~  157 (1146)
T PRK08633         81 --RIVKLFEVGLTLLIVLAYYLGWFWLAFAVTFLLGAQSAIYSPAKYGIIPELVGKENLSRANGLLEAFTIVAILA-GTA  157 (1146)
T ss_pred             --HHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHhhchHHHhhhHHhcCcccchhhhhHHHHHHHHHHHH-HHH
Confidence              3333222222221   1 12345677888899999999988999999999999999999999999999999996 999


Q ss_pred             HHHHHHhh
Q 017754          283 IASGIYDY  290 (366)
Q Consensus       283 l~G~l~d~  290 (366)
                      ++|++.+.
T Consensus       158 l~~~l~~~  165 (1146)
T PRK08633        158 LFSFLFES  165 (1146)
T ss_pred             HHHHHHHh
Confidence            99999876

>PRK15402 multidrug efflux system translocase MdfA; Provisional

Probab=99.16  E-value=2.8e-09  Score=104.72  Aligned_cols=156  Identities=13%  Similarity=-0.106  Sum_probs=107.7

Q ss_pred             HHHHhhhhhHHHHHHHHHHhhhhHHHHHhcHHHHH-HHhCCChhHH--HHHHHHHHHhhhhhhhhhhhhhhhhhccCchh
Q 017754          129 LPQALMKADFLLLFFSLVLASGSGLTVIDNLGQIC-QSLGYADTSI--YVSMISIWNFLGRVGGGYFSEAIVRKFAYPRP  205 (366)
Q Consensus       129 ~~~~l~~~~~~ll~~~~~~~~~~~~~~~~~l~~i~-~~~g~s~~~~--~vsl~~i~~~~g~~~~G~lsD~~grr~~~~R~  205 (366)
                      +++.++++.+|...+..++............|.+. +.+|++..+.  ......++..+|+++.|+++||+++|+..   
T Consensus       208 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~g~~~~~~g~~~~~~~~~~~~g~~~~g~l~~r~~~~~~~---  284 (406)
T PRK15402        208 YKLVLKNRRFVAGALALGLVSLPLLAWIALSPVILISGEQLSSYEYGLLQVPVFGALIAGNLTLARLTSRRPLRSLI---  284 (406)
T ss_pred             HHHHHcCcHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHH---
Confidence            45667888888877666555444444555567765 4578887654  34455667888999999999999887654   


Q ss_pred             HHHHHHHHHHHHHHHHHHh------hhhHHHHHHHHHHHHHHhhhhhhHHHHHHHhhCCCchhhHHHHHHhhhhhhHHhh
Q 017754          206 VAMAVAQVVMAFALLYYAI------GWPGEIYVTTVLVGLSYGAHWAIVPAAASELFGLKSFGALYNFLTLASPAGSLIF  279 (366)
Q Consensus       206 ~~~~~~~~~~~~~~~l~~~------~~~~~l~~~~~l~G~~~g~~~~~~~~~~se~f~~~~~g~~~g~~~~~~~~G~~i~  279 (366)
                         .++.++++++.+++..      .+...+++..++.|++.+...+........ -.++++|+..+..++...+|..+ 
T Consensus       285 ---~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~g~~~~~~~~~~~~~~-~~~~~~g~~~~~~~~~~~~~~~~-  359 (406)
T PRK15402        285 ---RMGLWPMVAGLLLAALATVISSHAYLWLTAGLSLYAFGIGLANAGLYRLTLF-SSDVSKGTVSAAMGMLSMLIFTV-  359 (406)
T ss_pred             ---HHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHhhhHHHHHhh-hccccccHHHHHHHHHHHHHHHH-
Confidence               4455555555444332      122345566777888887766655444333 33478999999999999999985 


Q ss_pred             hhHHHHHHHhhhh
Q 017754          280 SGVIASGIYDYYA  292 (366)
Q Consensus       280 gp~l~G~l~d~~~  292 (366)
                      |+.+.|++++..+
T Consensus       360 g~~~~~~l~~~~~  372 (406)
T PRK15402        360 GIELSKHAYLGGG  372 (406)
T ss_pred             HHHHHHhcccCCc
Confidence            9999999998876

>PRK11902 ampG muropeptide transporter; Reviewed

Probab=99.15  E-value=2.6e-09  Score=105.09  Aligned_cols=152  Identities=17%  Similarity=0.113  Sum_probs=113.0

Q ss_pred             HHHHhcHHHHHHHhCCChhHH-HHHHHHHHHhhhhhhhhhhhhhh-----hhhccCchhHHHHHHHHHHHHHHHHHHhh-
Q 017754          153 LTVIDNLGQICQSLGYADTSI-YVSMISIWNFLGRVGGGYFSEAI-----VRKFAYPRPVAMAVAQVVMAFALLYYAIG-  225 (366)
Q Consensus       153 ~~~~~~l~~i~~~~g~s~~~~-~vsl~~i~~~~g~~~~G~lsD~~-----grr~~~~R~~~~~~~~~~~~~~~~l~~~~-  225 (366)
                      ......+|.+.++.|++.+++ .++....- .+..+++|+++||+     |||+.     ++.++.++++++...+... 
T Consensus        16 ~~~~~~~~~~l~~~g~~~~~ig~~~~~~~~-~~~~~l~g~~~Dr~~~~~~g~rr~-----~l~~~~~~~~l~~~~l~~~~   89 (402)
T PRK11902         16 ALTSGTLQAWMTVEGLDIQTIGFFSLVGQA-YIFKFLWAPLMDRYTPPLLGRRRG-----WLLLTQVGLAASIAAMAFCP   89 (402)
T ss_pred             HHHHHHHHHHHHHcCCCHHHHHHHHHHHHH-HHHHHHHHHHHHcccccCCCcchh-----HHHHHHHHHHHHHHHHHhcC
Confidence            345567899999999999887 44444433 68899999999999     66432     3455566665555554432 


Q ss_pred             ---hhHHHHHHHHHHHHHHhhhhhhHHHHHHHhhCCCchhhHHHHHHhhhhhhHHhhhhHHHHHHHhhh-hhhhhhhhhh
Q 017754          226 ---WPGEIYVTTVLVGLSYGAHWAIVPAAASELFGLKSFGALYNFLTLASPAGSLIFSGVIASGIYDYY-AEKQAGLLWK  301 (366)
Q Consensus       226 ---~~~~l~~~~~l~G~~~g~~~~~~~~~~se~f~~~~~g~~~g~~~~~~~~G~~i~gp~l~G~l~d~~-~~~~~~~~~~  301 (366)
                         +...+++..++.+++.+...+...++++|.+++++|+.+.++..++..+|..+ ++.+++.+.+.. +         
T Consensus        90 ~~~~~~~l~~~~~~~~~~~~~~~~~~~al~~~~~~~~~r~~~~~~~~~g~~~g~i~-g~~l~~~l~~~~~g---------  159 (402)
T PRK11902         90 PHAALWPLAGLAVLVAFLSASQDIVFDAYSTDVLHPEERGAGAAVKVLGYRLAMLV-SGGLALWLADRVLG---------  159 (402)
T ss_pred             ccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcChhhhhHHHHHHHHHHHHHHHH-HhHHHHHHHhcccC---------
Confidence               12334555556677777777888899999999999999999999999999996 888899888754 4         


Q ss_pred             ccCCCCCcccCCCCCCcccCCcchHHHHHHHHHHHHHHHHHH
Q 017754          302 YNGNMLPVSFRDQETPTCLGSICYSITCGIMAGLCIIAMVMS  343 (366)
Q Consensus       302 ~~~~~~~~~~~~~~~~~c~g~~~~~~~f~i~~~~~~~~~~~~  343 (366)
                                             |+..|++.+++.+++.+..
T Consensus       160 -----------------------w~~~f~i~a~~~l~~~l~~  178 (402)
T PRK11902        160 -----------------------WGNTYLLMAGLMLAGALTT  178 (402)
T ss_pred             -----------------------HHHHHHHHHHHHHHHHHHH
Confidence                                   9999999888776655543

>PRK11646 multidrug resistance protein MdtH; Provisional

Probab=99.14  E-value=3.2e-09  Score=104.62  Aligned_cols=158  Identities=10%  Similarity=0.096  Sum_probs=102.1

Q ss_pred             CHHHHhhhhhHHHHHHHHHHhhhhHHHHHhcHHHHHHHhCCChhHH--HHHHHHHHHhhhhhhhhhhhhh-hhhhccCch
Q 017754          128 TLPQALMKADFLLLFFSLVLASGSGLTVIDNLGQICQSLGYADTSI--YVSMISIWNFLGRVGGGYFSEA-IVRKFAYPR  204 (366)
Q Consensus       128 ~~~~~l~~~~~~ll~~~~~~~~~~~~~~~~~l~~i~~~~g~s~~~~--~vsl~~i~~~~g~~~~G~lsD~-~grr~~~~R  204 (366)
                      ++++.++++.++.+.+..+...........++|.+.++.+.++...  ..++..+....+....++..|+ ++.++.   
T Consensus       200 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~g~l~~~~~~~~~~~~~~~~~~~~~r~~~~~~---  276 (400)
T PRK11646        200 GMTRVLRDKRFVTYVLTLTGYYMLAVQVMLMLPIMVNDIAGSPSAVKWMYAIEACLSLTLLYPIARWSEKRFRLEHR---  276 (400)
T ss_pred             HHHHHHcCchHHHHHHHHHHHHHHHHHHHHhhhhhHHhhcCCchHHHHHHHHHHHHHHHHHHHHHHHHHHhcchhHH---
Confidence            4567778888876555443333323334567888888866554433  3444444444444334444443 332221   


Q ss_pred             hHHHHHHHHHHHHHHHHHHh-hhhHHHHHHHHHHHHHHhhhhhhHHHHHHHhhCCCchhhHHHHHHhhhhhhHHhhhhHH
Q 017754          205 PVAMAVAQVVMAFALLYYAI-GWPGEIYVTTVLVGLSYGAHWAIVPAAASELFGLKSFGALYNFLTLASPAGSLIFSGVI  283 (366)
Q Consensus       205 ~~~~~~~~~~~~~~~~l~~~-~~~~~l~~~~~l~G~~~g~~~~~~~~~~se~f~~~~~g~~~g~~~~~~~~G~~i~gp~l  283 (366)
                         +..+.++.+++.+++.. .+...+.+..++.+++.+...+...+.+.+..|++.+|+.+|+.+....+|..+ ||.+
T Consensus       277 ---~~~~~~~~~~~~~~l~~~~~~~~~~~~~~l~~~g~~~~~p~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~i-g~~l  352 (400)
T PRK11646        277 ---LMAGLLIMSLSMFPIGMVSNLQQLFTLICLFYIGSIIAEPARETLSASLADARARGSYMGFSRLGLALGGAI-GYIG  352 (400)
T ss_pred             ---HHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHccHHHHHHhcCCcccchhhhhHHHHHHHHHHHh-cccc
Confidence               24455555555555443 333344455566777777777777889999999999999999999999999996 9999


Q ss_pred             HHHHHhhhh
Q 017754          284 ASGIYDYYA  292 (366)
Q Consensus       284 ~G~l~d~~~  292 (366)
                      +|+++|..+
T Consensus       353 ~G~l~~~~~  361 (400)
T PRK11646        353 GGWLFDLGK  361 (400)
T ss_pred             hHHHHHHHh
Confidence            999999875

>TIGR00901 2A0125 AmpG-related permease

Probab=99.14  E-value=2.9e-09  Score=102.62  Aligned_cols=166  Identities=15%  Similarity=0.057  Sum_probs=112.9

Q ss_pred             HHhcHHHHHHHhCCChhHH-HHHHHHHHHhhhhhhhhhhhhhhhhhccCchhHHHHHHHHHHHHHHHHHHhh----hhHH
Q 017754          155 VIDNLGQICQSLGYADTSI-YVSMISIWNFLGRVGGGYFSEAIVRKFAYPRPVAMAVAQVVMAFALLYYAIG----WPGE  229 (366)
Q Consensus       155 ~~~~l~~i~~~~g~s~~~~-~vsl~~i~~~~g~~~~G~lsD~~grr~~~~R~~~~~~~~~~~~~~~~l~~~~----~~~~  229 (366)
                      +...+|.+.+++|++.++. ..+...+...+ .+++|+++||+..|+.-+|+.++..+.++.++..+.+...    +...
T Consensus         7 ~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~-~~~~g~~~Dr~~~~~~Grr~~~l~~~~~~~~~~~~~l~~~~~~~~l~~   85 (356)
T TIGR00901         7 VGNTLPYWLRSKNVSLKTIGFFSLVGLPYSL-KFLWSPLVDTVYLPFFGRRRSWLVLTQVLLLSLLLILSFLVPSTDLPL   85 (356)
T ss_pred             HHhHHHHHHHHcCCCHHHHHHHHHHHHHHHH-HHHHHHHHhcccCCCCCccHHHHHHHHHHHHHHHHHHHcCCcchhHHH
Confidence            3456888999999998876 44433333333 8999999999843221223344456666666554444422    2223


Q ss_pred             HHHHHHHHHHHHhhhhhhHHHHHHHhhCCCchhhHHHHHHhhhhhhHHhhhhHHHHHHHhhhhhhhhhhhhhccCCCCCc
Q 017754          230 IYVTTVLVGLSYGAHWAIVPAAASELFGLKSFGALYNFLTLASPAGSLIFSGVIASGIYDYYAEKQAGLLWKYNGNMLPV  309 (366)
Q Consensus       230 l~~~~~l~G~~~g~~~~~~~~~~se~f~~~~~g~~~g~~~~~~~~G~~i~gp~l~G~l~d~~~~~~~~~~~~~~~~~~~~  309 (366)
                      ++...++.+++.+...+...++++|++++++|+.+.++...+..+|..+ ++.+++.+.+..+..+              
T Consensus        86 l~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~r~~~~~~~~~~~~~G~~~-~~~l~~~l~~~~g~~~--------------  150 (356)
T TIGR00901        86 LAGLAFLIAFFSATQDIALDAWRLEILSDEELGYGSTIYIVGYRAGMLL-SGSLALVLASPEFANT--------------  150 (356)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhCCHhhhchHHHHHHHHHHHHHHH-HHHHHHHHhhhccccc--------------
Confidence            4445556677777777778889999999999999999999999999996 8999998887654110              


Q ss_pred             ccCCCCCCcccCCcchHHHHHHHHHHHHHHHHHHHHH
Q 017754          310 SFRDQETPTCLGSICYSITCGIMAGLCIIAMVMSLIV  346 (366)
Q Consensus       310 ~~~~~~~~~c~g~~~~~~~f~i~~~~~~~~~~~~~~~  346 (366)
                                .....|+..|++.+++.+++.+..+++
T Consensus       151 ----------~~~~~wr~~f~i~ai~~l~~~~~~~~~  177 (356)
T TIGR00901       151 ----------GLITLWGYIFFWTALLILPGLLVTLFL  177 (356)
T ss_pred             ----------ccccccHHHHHHHHHHHHHHHHHHHHh
Confidence                      012249999998887776655554433

>PRK11128 putative 3-phenylpropionic acid transporter; Provisional

Probab=99.14  E-value=1.6e-09  Score=105.78  Aligned_cols=133  Identities=14%  Similarity=0.130  Sum_probs=97.0

Q ss_pred             HHHHhcHHHHHHHhCCChhHH--HHHHHHHHHhhhhhhhhhhhhhhhhhccCchhHHHHHHHHHHHHHHHHHH-hhhhHH
Q 017754          153 LTVIDNLGQICQSLGYADTSI--YVSMISIWNFLGRVGGGYFSEAIVRKFAYPRPVAMAVAQVVMAFALLYYA-IGWPGE  229 (366)
Q Consensus       153 ~~~~~~l~~i~~~~g~s~~~~--~vsl~~i~~~~g~~~~G~lsD~~grr~~~~R~~~~~~~~~~~~~~~~l~~-~~~~~~  229 (366)
                      ..+...+|.+.+++|.+..++  .+++..+...++.+++|+++||++|+....|.. .. ...+...  .... ..+.+.
T Consensus        21 g~~~p~l~~~l~~~g~s~~~iG~~~~~~~l~~~l~~~~~g~l~dr~g~~~~~~~~~-~~-~~~~~~~--~~~~~~~~~~~   96 (382)
T PRK11128         21 GVFLPFWSVWLKGQGYTPETIGLLLGAGLVARFLGSLLIAPRVKDPSQLIPALRLL-AL-LTLLFAV--AFWFGAHSFWL   96 (382)
T ss_pred             HHHhhhHHHHHHhcCCCHHHHHHHHHHHHHHHHhhhHHHHHHHhhhcchHHHHHHH-HH-HHHHHHH--HHHHhcccHHH
Confidence            446677889999999988776  888899999999999999999999854332221 11 1111111  1122 234556


Q ss_pred             HHHHHHHHHHHHhhhhhhHHHHHHHhhCCCchhhHHHHHHhhhhhhHHhhhhHHHHHHHhhhh
Q 017754          230 IYVTTVLVGLSYGAHWAIVPAAASELFGLKSFGALYNFLTLASPAGSLIFSGVIASGIYDYYA  292 (366)
Q Consensus       230 l~~~~~l~G~~~g~~~~~~~~~~se~f~~~~~g~~~g~~~~~~~~G~~i~gp~l~G~l~d~~~  292 (366)
                      +++..++.|++.+...+...+++.+.  .++++..++...+...+|..+ ||+++|++.++.+
T Consensus        97 l~i~~~l~g~~~~~~~~~~~a~~~~~--~~~~~~a~~~~~~~~~lg~~i-gp~lgg~l~~~~g  156 (382)
T PRK11128         97 LFVAIGLFNLFFSPLVPLTDALANTW--QKQIGLDYGKVRLWGSIAFVI-GSALTGKLVSWFG  156 (382)
T ss_pred             HHHHHHHHHHHHcccccHHHHHHHHH--HhhccCCcchHHHHHHHHHHH-HHHHHHHHHHHcC
Confidence            66777888888887777777666665  456788888888888999996 9999999999887

>PRK11902 ampG muropeptide transporter; Reviewed

Probab=99.11  E-value=1.4e-08  Score=99.92  Aligned_cols=176  Identities=13%  Similarity=0.141  Sum_probs=104.6

Q ss_pred             CHHHHhhhhhHHHHHHHHHHhhhhHHH-HHhcHHHHHHHhCCChhHH--HHHHHH-HHHhhhhhhhhhhhhhhhhhccCc
Q 017754          128 TLPQALMKADFLLLFFSLVLASGSGLT-VIDNLGQICQSLGYADTSI--YVSMIS-IWNFLGRVGGGYFSEAIVRKFAYP  203 (366)
Q Consensus       128 ~~~~~l~~~~~~ll~~~~~~~~~~~~~-~~~~l~~i~~~~g~s~~~~--~vsl~~-i~~~~g~~~~G~lsD~~grr~~~~  203 (366)
                      ++++.++++.+|.+++..++....... .....+.+.+++|++....  ..+..+ ++..+|.+++|+++||+++|+.. 
T Consensus       201 ~~~~l~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~l~~~~G~~~~~~g~~~~~~~~~~~i~g~~~~g~l~~r~g~~~~l-  279 (402)
T PRK11902        201 PLRDFFSRRGAWALLLLIVLYKLGDAFAGSLSTTFLIRGAGFSAGEVGIVNKTLGLAATIVGALAGGTLMVRLGLYRSL-  279 (402)
T ss_pred             HHHHHHhCcCHHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCCHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHhHHHHH-
Confidence            356678888888766554444332222 2233444556689987665  333333 45788999999999999986543 


Q ss_pred             hhHHHHHHHHHHHHHHHHHHh--hhhHHHHHHHH----HHHHHHhhhhhhHHHHHHHhhCCCchhhHHHHHHhhhhhhHH
Q 017754          204 RPVAMAVAQVVMAFALLYYAI--GWPGEIYVTTV----LVGLSYGAHWAIVPAAASELFGLKSFGALYNFLTLASPAGSL  277 (366)
Q Consensus       204 R~~~~~~~~~~~~~~~~l~~~--~~~~~l~~~~~----l~G~~~g~~~~~~~~~~se~f~~~~~g~~~g~~~~~~~~G~~  277 (366)
                        ........+..+.+.++..  .+...++.+.+    +.|++.+...+....++.+.++.+.    ++..+....+|..
T Consensus       280 --~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~l~~~  353 (402)
T PRK11902        280 --MLFGVLQAVSNLGYWVLAVTPKHLWTMALAIGIENLCGGMGTAAFVALLMALCNRSFSATQ----YALLSALASVGRV  353 (402)
T ss_pred             --HHHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCcHHH----HHHHHHHHHHHHH
Confidence              1111122222222222232  22233333333    3445555556666667777766554    4555555567777


Q ss_pred             hhhhHHHHHHHhhhhhhhhhhhhhccCCCCCcccCCCCCCcccCCcchHHHHHHHHHHHHHHHHHH
Q 017754          278 IFSGVIASGIYDYYAEKQAGLLWKYNGNMLPVSFRDQETPTCLGSICYSITCGIMAGLCIIAMVMS  343 (366)
Q Consensus       278 i~gp~l~G~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~g~~~~~~~f~i~~~~~~~~~~~~  343 (366)
                      + ++.++|.++|..|                                |+..|.+.+++++++.++.
T Consensus       354 ~-~~~~~G~l~~~~G--------------------------------~~~~f~~~~~~~~~~~~~~  386 (402)
T PRK11902        354 Y-VGPTSGYLVEAYG--------------------------------WPGFYLMTVVIALPGLALL  386 (402)
T ss_pred             H-HHHHHHHHHHHhC--------------------------------hHHHHHHHHHHHHHHHHHH
Confidence            5 5668999999987                                9999988887777765543

>PRK10429 melibiose:sodium symporter; Provisional

Probab=99.11  E-value=6.7e-09  Score=104.59  Aligned_cols=156  Identities=10%  Similarity=0.060  Sum_probs=103.2

Q ss_pred             HHHhhhhhHHHHHHHHHHhhhhHHHHHhcHHHHHHHhCCChhHH--HHHHHHHHHhhhhhhhhhhhhhhhhhccCchhHH
Q 017754          130 PQALMKADFLLLFFSLVLASGSGLTVIDNLGQICQSLGYADTSI--YVSMISIWNFLGRVGGGYFSEAIVRKFAYPRPVA  207 (366)
Q Consensus       130 ~~~l~~~~~~ll~~~~~~~~~~~~~~~~~l~~i~~~~g~s~~~~--~vsl~~i~~~~g~~~~G~lsD~~grr~~~~R~~~  207 (366)
                      +..++|+.++.+++..++............+++.+....+....  +.++..+...++.+++++++||+|+|+.+     
T Consensus       225 ~~~~~n~~~~~ll~~~~~~~~~~~~~~~~~~y~~~y~~~~~~~~~~~~~~~~i~~ii~~~~~~~l~~r~gkk~~~-----  299 (473)
T PRK10429        225 ALIYKNDQLSCLLGMALAYNIASNIINGFAIYYFTYVIGDADLFPYYLSYAGAANLVTLILFPRLVKSLSRRILW-----  299 (473)
T ss_pred             HHHhcCHHHHHHHHHHHHHHHHHHHHhhheeeEEEEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcHHHH-----
Confidence            34557777777666665555444444344444444432222222  45555678888999999999999987665     


Q ss_pred             HHHHHHHHHHHHHHHH------hhhhHHHHHHHHHHHHHHhhhhhhHHHHHHHh-------hCCCchhhHHHHHHhhhhh
Q 017754          208 MAVAQVVMAFALLYYA------IGWPGEIYVTTVLVGLSYGAHWAIVPAAASEL-------FGLKSFGALYNFLTLASPA  274 (366)
Q Consensus       208 ~~~~~~~~~~~~~l~~------~~~~~~l~~~~~l~G~~~g~~~~~~~~~~se~-------f~~~~~g~~~g~~~~~~~~  274 (366)
                       .++.++.+++.+.+.      ..+...+++..++.|++.+..++..+++++|.       .|.+..|..++...+..-+
T Consensus       300 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~g~~~~~~~~~~~am~ad~id~~e~~tG~R~~G~~~s~~~~~~K~  378 (473)
T PRK10429        300 -AGASIFPVLSCGVLLLMGLAAPHNALLIVIAGILLNIGTALFWVLQVIMVADTVDYGEYKLGIRCESIAYSVQTMVVKG  378 (473)
T ss_pred             -HHHHHHHHHHHHHHHHHhccCchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhHhcCccchhHHHHHHHHHHHH
Confidence             333333333322211      12233455666778889888888889999988       3456678899999999999


Q ss_pred             hHHhhhhHHHHHHHhhhh
Q 017754          275 GSLIFSGVIASGIYDYYA  292 (366)
Q Consensus       275 G~~i~gp~l~G~l~d~~~  292 (366)
                      |..+ ++.+.|++.+..|
T Consensus       379 ~~al-~~~i~g~~l~~~G  395 (473)
T PRK10429        379 GSAF-AAFFIGVVLGLIG  395 (473)
T ss_pred             HHHH-HHHHHHHHHHHcC
Confidence            9996 9999999998765

>KOG2533 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism]

Probab=99.11  E-value=2e-09  Score=108.31  Aligned_cols=138  Identities=11%  Similarity=0.015  Sum_probs=94.1

Q ss_pred             CCHHHHhhhhhHHHHHHHHHHhhhhHHHHHhcHHHHHHH-hCCChhHH--HHHHHHHHHhhhhhhhhhhhhhhhhhccCc
Q 017754          127 FTLPQALMKADFLLLFFSLVLASGSGLTVIDNLGQICQS-LGYADTSI--YVSMISIWNFLGRVGGGYFSEAIVRKFAYP  203 (366)
Q Consensus       127 ~~~~~~l~~~~~~ll~~~~~~~~~~~~~~~~~l~~i~~~-~g~s~~~~--~vsl~~i~~~~g~~~~G~lsD~~grr~~~~  203 (366)
                      ..+++++++|..|.+.++++|.....+++.+|+|.+.++ .|++..++  +...+.++++++.+++|++|||+.. ....
T Consensus       264 ~~~~~a~~dp~vw~~~l~~~~~~lv~~~~~~~lpl~l~~~~~~s~~~a~~ls~~~~~~g~v~~i~ag~lsdr~~~-~~~~  342 (495)
T KOG2533|consen  264 KGFKEALKDPGVWPFSLCYFFLKLVNYGFSYWLPLYLKSNGGYSELQANLLSTPYDVGGIVGLILAGYLSDRLKT-IFAR  342 (495)
T ss_pred             HHHHHHHhchhHHHHHHHHHHHhhccccHHHHHHHHHHcCCCcChHHhccccchHHhhhHHHHHHHHHHHHHHhh-hHHH
Confidence            457789999999999999999999999999999999998 56887766  7788889999999999999999530 0001


Q ss_pred             hhHHHHHHHHHHHHHHHHHH-hhhhHHHHHHHHHHHHHHhhhhhhHHHHHHHhhCCCchhhHH
Q 017754          204 RPVAMAVAQVVMAFALLYYA-IGWPGEIYVTTVLVGLSYGAHWAIVPAAASELFGLKSFGALY  265 (366)
Q Consensus       204 R~~~~~~~~~~~~~~~~l~~-~~~~~~l~~~~~l~G~~~g~~~~~~~~~~se~f~~~~~g~~~  265 (366)
                      |..+.....+...+++..+. .......+.+.+...++.+...+.....+++......+....
T Consensus       343 ~~~~~~~~~~~~~~g~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~s~~~~g~~k~~~~  405 (495)
T KOG2533|consen  343 RLLFIVFLCLYAIIGAISLLAAAVLPGAYGAFLIGPYGLIATAIIALSWTSANLAGNTKALTT  405 (495)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhhccchHHhHHHHhcchhhHHHHHHHHhhccccccchHHhHHH
Confidence            22333444555555644443 322344444444444445555555666666666555444333

>PRK06814 acylglycerophosphoethanolamine acyltransferase; Provisional

Probab=99.10  E-value=4e-09  Score=117.11  Aligned_cols=156  Identities=13%  Similarity=0.065  Sum_probs=115.8

Q ss_pred             HHHHhhhhhHHHHHHHHHHhhhhHHHHHhcHHHHHHH-hCCChhHH--HHHHHHHHHhhhhhhhhhhhhhhhhhccCchh
Q 017754          129 LPQALMKADFLLLFFSLVLASGSGLTVIDNLGQICQS-LGYADTSI--YVSMISIWNFLGRVGGGYFSEAIVRKFAYPRP  205 (366)
Q Consensus       129 ~~~~l~~~~~~ll~~~~~~~~~~~~~~~~~l~~i~~~-~g~s~~~~--~vsl~~i~~~~g~~~~G~lsD~~grr~~~~R~  205 (366)
                      ++.+.+++.+|.+.+.+++.......+..++|.+.++ +|.+....  +.+.+.++..+|.++.|+++|+..+++..   
T Consensus       218 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~g~~~~~~g~~~~~~~~g~~ig~~~~g~l~~~~~~~~~~---  294 (1140)
T PRK06814        218 LKYAKADKRIWLAILGISWFWLVGAVVLSQLPLLAKETLGGDENVATLFLAVFSVGVAVGSFLASKLSEGRITLLYV---  294 (1140)
T ss_pred             HHHHhcCchHHHHHHHHHHHHHHHHHHHHHhHHHHHHHcCCchHHHHHHHHHHHHHHHHHHHHHHHHhCCceeeeee---
Confidence            4556678888888877777666666677788988866 68876554  78888899999999999999877665433   


Q ss_pred             HHHHHHHHHHHHHHHHHHh---------------------hhhHHHHHHHHHHHHHHhhhhhhHHHHHHHhhCCCchhhH
Q 017754          206 VAMAVAQVVMAFALLYYAI---------------------GWPGEIYVTTVLVGLSYGAHWAIVPAAASELFGLKSFGAL  264 (366)
Q Consensus       206 ~~~~~~~~~~~~~~~l~~~---------------------~~~~~l~~~~~l~G~~~g~~~~~~~~~~se~f~~~~~g~~  264 (366)
                         ..+.++++++.+.+..                     .+.+.++++.+++|++.+...+...+++.+.++.+.+|.+
T Consensus       295 ---~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~~~G~v  371 (1140)
T PRK06814        295 ---PIGALLMGLFGLDLAFASSSVPAEPAQLKSILVFLSKRHGWRILIDLFGLAAAGGLYIVPLFAALQAWANPAHRARV  371 (1140)
T ss_pred             ---hHHHHHHHHHHHHHHhcccccccccccccchhhhhcccccHHHHHHHHHHHHHHHHhHHHHHHHHHhhCCcccceee
Confidence               1222222222111111                     3334556677888999888888889999999999999999


Q ss_pred             HHHHHhhhhhhHHhhhhHHHHHHHhhh
Q 017754          265 YNFLTLASPAGSLIFSGVIASGIYDYY  291 (366)
Q Consensus       265 ~g~~~~~~~~G~~i~gp~l~G~l~d~~  291 (366)
                      +|+.++...+|..+ +++++|.+++..
T Consensus       372 ~g~~~~~~~~~~~i-g~~~~g~l~~~~  397 (1140)
T PRK06814        372 IAANNVLNAAFMVA-GTIILALLQALG  397 (1140)
T ss_pred             eHHHHHHHHHHHHH-HHHHHHHHHHhc
Confidence            99999999999986 899999998654

>TIGR00885 fucP L-fucose:H+ symporter permease

Probab=99.10  E-value=5.3e-09  Score=103.48  Aligned_cols=156  Identities=10%  Similarity=-0.036  Sum_probs=110.6

Q ss_pred             CHHHHhhhhhHHHHHHHHHHhhhhHHHHHhcHHHHHHHhCC--ChhHH--HHHHHHHHHhhhhhhhhhhhhhhhhhccCc
Q 017754          128 TLPQALMKADFLLLFFSLVLASGSGLTVIDNLGQICQSLGY--ADTSI--YVSMISIWNFLGRVGGGYFSEAIVRKFAYP  203 (366)
Q Consensus       128 ~~~~~l~~~~~~ll~~~~~~~~~~~~~~~~~l~~i~~~~g~--s~~~~--~vsl~~i~~~~g~~~~G~lsD~~grr~~~~  203 (366)
                      ++++.++++.++...++.++..+......++++.+.++.+.  +....  +.+.......+||+++|++.||+++|+.. 
T Consensus       224 ~~~~~~~~~~~~~~~l~~f~yvg~e~~~~s~l~~y~~~~~~~~~~~~a~~~~~~~~~~~~vGR~~~~~l~~r~~~~~~l-  302 (410)
T TIGR00885       224 SLSRLARIRHYREGVIAQFFYVGVQIMCWTFIIQYAVRLIPGMTAGFAANYNIGAMVIFFISRFIGTWLISYLAAHKVL-  302 (410)
T ss_pred             hHHHHHhChhHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHH-
Confidence            34577888999888877777777766777888888876543  32222  56666677889999999999999876543 


Q ss_pred             hhHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHhhhhhhHHHHHHHhhCCCchhhHHHHHHhhhhhhHHhhhhHH
Q 017754          204 RPVAMAVAQVVMAFALLYYAIGWPGEIYVTTVLVGLSYGAHWAIVPAAASELFGLKSFGALYNFLTLASPAGSLIFSGVI  283 (366)
Q Consensus       204 R~~~~~~~~~~~~~~~~l~~~~~~~~l~~~~~l~G~~~g~~~~~~~~~~se~f~~~~~g~~~g~~~~~~~~G~~i~gp~l  283 (366)
                           .+..++.++.+++..........++.++.|++.+..|+...+...+..+.+......++.+.  .+|+.+ .|.+
T Consensus       303 -----~i~~~~~~~~~ll~~~~~~~~~~~~l~~~glf~s~~fp~i~sl~~~~~g~~~~~~s~~l~~~--~~Gga~-~p~l  374 (410)
T TIGR00885       303 -----MAYAIIGMALCLGSIFAGGHVGLYCLTLCSAFMSLMFPTIYGIALKGLGQDTKYGAAGLVMA--IIGGGI-VPPL  374 (410)
T ss_pred             -----HHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhHHHHHHH--Hhccch-HHHH
Confidence                 44444444444444433333345667788888889999999999999986654444444443  388886 7999


Q ss_pred             HHHHHhhhh
Q 017754          284 ASGIYDYYA  292 (366)
Q Consensus       284 ~G~l~d~~~  292 (366)
                      .|++.|..+
T Consensus       375 ~G~~~d~~~  383 (410)
T TIGR00885       375 QGFIIDMKE  383 (410)
T ss_pred             HHHHHHHhc
Confidence            999999753

This family describes the L-fucose permease in bacteria. L-fucose(6-deoxy-L-galactose) is a monosaccharide found in glycoproteins and cell wall polysaccharides. L-fucose is used in bacteria through an inducible pathway mediated by atleast four enzymes: a permease, isomerase, kinase and an aldolase which are encoded by fucP, fucI, fucK, fucA respectively. The fuc genes belong to a regulon comprising of four linked operons: fucO, fucA, fucPIK and fucR. The positive regulator is encoded by fucR, whose protein responds to fuculose-1-phosphate, which acts as an effector.

>PRK10133 L-fucose transporter; Provisional

Probab=99.09  E-value=5.6e-09  Score=104.21  Aligned_cols=155  Identities=12%  Similarity=0.075  Sum_probs=109.7

Q ss_pred             HHHHhhhhhHHHHHHHHHHhhhhHHHHHhcHHHHH-H-HhCCChhHH--HHHHHHHHHhhhhhhhhhhhhhhhhhccCch
Q 017754          129 LPQALMKADFLLLFFSLVLASGSGLTVIDNLGQIC-Q-SLGYADTSI--YVSMISIWNFLGRVGGGYFSEAIVRKFAYPR  204 (366)
Q Consensus       129 ~~~~l~~~~~~ll~~~~~~~~~~~~~~~~~l~~i~-~-~~g~s~~~~--~vsl~~i~~~~g~~~~G~lsD~~grr~~~~R  204 (366)
                      .++.++++.+|...+..++..+.......+++.+. + .+|++....  ....+.++.++|++.+|+++||+++|+..  
T Consensus       251 ~~~ll~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~g~s~~~ag~~~~~~~~~~~vG~~~~g~l~~r~g~~~~l--  328 (438)
T PRK10133        251 LSRLARIRHWRWAVLAQFCYVGAQTACWSYLIRYAVEEIPGMTAGFAANYLTGTMVCFFIGRFTGTWLISRFAPHKVL--  328 (438)
T ss_pred             HHHHHhCchHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHH--
Confidence            45778899888776666666666555666777664 4 468887765  78888999999999999999999987654  


Q ss_pred             hHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHhhhhhhHHHHHHHhhCCCchhhHHHHHHhhhhhhHHhhhhHHH
Q 017754          205 PVAMAVAQVVMAFALLYYAIGWPGEIYVTTVLVGLSYGAHWAIVPAAASELFGLKSFGALYNFLTLASPAGSLIFSGVIA  284 (366)
Q Consensus       205 ~~~~~~~~~~~~~~~~l~~~~~~~~l~~~~~l~G~~~g~~~~~~~~~~se~f~~~~~g~~~g~~~~~~~~G~~i~gp~l~  284 (366)
                          ..+.++.++++++.........+....+.|+|.+..++...+...+.+|. +.+.+.++..+. .+|+.+ +|.+.
T Consensus       329 ----~~~~~~~~~~~~~~~~~~~~~~~~~~~l~glg~~~i~P~~~s~a~~~~~~-~~~~as~l~~~~-~~g~~~-~~~i~  401 (438)
T PRK10133        329 ----AAYALIAMALCLISAFAGGHVGLIALTLCSAFMSIQYPTIFSLGIKNLGQ-DTKYGSSFIVMT-IIGGGI-VTPVM  401 (438)
T ss_pred             ----HHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHHHHHHHHHcccch-hhccchhHHhHH-hccchH-HHHHH
Confidence                33333333333332221112234566788999999999999988888865 466777776643 467775 78999


Q ss_pred             HHHHhhhh
Q 017754          285 SGIYDYYA  292 (366)
Q Consensus       285 G~l~d~~~  292 (366)
                      |++.|..+
T Consensus       402 G~l~~~~g  409 (438)
T PRK10133        402 GFVSDAAG  409 (438)
T ss_pred             HHHHHhcc
Confidence            99998765

>PF05977 MFS_3: Transmembrane secretion effector; InterPro: IPR010290 This family consists of the enterobactin exporter EntS proteins and putative permeases all belonging to the major facilitator superfamily

Probab=99.08  E-value=7e-09  Score=105.52  Aligned_cols=155  Identities=14%  Similarity=0.145  Sum_probs=115.0

Q ss_pred             HHhhhhhHHHHHHHHHHhhhhHHHHHhcHHHHHHHhCCChhHH--HHHHHHHHHhhhhhhhhhhhhhhhhhccCchhHHH
Q 017754          131 QALMKADFLLLFFSLVLASGSGLTVIDNLGQICQSLGYADTSI--YVSMISIWNFLGRVGGGYFSEAIVRKFAYPRPVAM  208 (366)
Q Consensus       131 ~~l~~~~~~ll~~~~~~~~~~~~~~~~~l~~i~~~~g~s~~~~--~vsl~~i~~~~g~~~~G~lsD~~grr~~~~R~~~~  208 (366)
                      ..++++.|..+|++.+....+.......++-+..++.-|....  ......+-.++..+++|.+.||+.||+.+      
T Consensus         5 aplr~~~Fr~lw~a~~iS~lG~~~~~va~~wlv~~lt~S~~~valv~~a~~LP~~Llsl~aG~laDr~drrril------   78 (524)
T PF05977_consen    5 APLRNRNFRRLWIAQLISNLGDWMQTVALAWLVTQLTGSPLMVALVQAASTLPILLLSLFAGALADRFDRRRIL------   78 (524)
T ss_pred             ccccCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHhhcccchHHH------
Confidence            3468888888888887776666655555666665554343322  33333445567888999999999988766      


Q ss_pred             HHHHHHHHHHHHHHH------hhhhHHHHHHHHHHHHHHhhhhhhHHHHHHHhhCCCchhhHHHHHHhhhhhhHHhhhhH
Q 017754          209 AVAQVVMAFALLYYA------IGWPGEIYVTTVLVGLSYGAHWAIVPAAASELFGLKSFGALYNFLTLASPAGSLIFSGV  282 (366)
Q Consensus       209 ~~~~~~~~~~~~l~~------~~~~~~l~~~~~l~G~~~g~~~~~~~~~~se~f~~~~~g~~~g~~~~~~~~G~~i~gp~  282 (366)
                      ..+.++.++..++++      ..+++.+++..++.|++.....+...++++|+.+.++...+.++..+..++...+ ||.
T Consensus        79 i~~~~~~~~~~~~L~~l~~~~~~~~~~Ll~~~fl~g~~~a~~~PA~~A~ip~lV~~~~L~~A~al~s~~~niar~i-GPa  157 (524)
T PF05977_consen   79 ILSQLLRALVALLLAVLAFFGLLSPWLLLILTFLLGIGSAFFNPAWQAIIPELVPKEDLPAANALNSISFNIARII-GPA  157 (524)
T ss_pred             HHHHHHHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHhhHHHHHHHHHHHHHHHHhc-cch
Confidence            555544443322221      2345677888899999988888999999999999999999999999999999996 999


Q ss_pred             HHHHHHhhhh
Q 017754          283 IASGIYDYYA  292 (366)
Q Consensus       283 l~G~l~d~~~  292 (366)
                      ++|.++...|
T Consensus       158 lgG~Lva~~G  167 (524)
T PF05977_consen  158 LGGILVAFFG  167 (524)
T ss_pred             HHHHHHHHHH
Confidence            9999998887

EntS exports the siderophore enterobactin out of the cell. The genetic locus entS was changed from ybdA so as to reflect its relevant biological function [].

>PRK08633 2-acyl-glycerophospho-ethanolamine acyltransferase; Validated

Probab=99.07  E-value=1.1e-08  Score=113.48  Aligned_cols=154  Identities=15%  Similarity=0.080  Sum_probs=112.7

Q ss_pred             HHHHhhhhhHHHHHHHHHHhhhhHHHHHhcHHHHHH-HhCCChh-HH--HHHHHHHHHhhhhhhhhhhhhhhhhhccCch
Q 017754          129 LPQALMKADFLLLFFSLVLASGSGLTVIDNLGQICQ-SLGYADT-SI--YVSMISIWNFLGRVGGGYFSEAIVRKFAYPR  204 (366)
Q Consensus       129 ~~~~l~~~~~~ll~~~~~~~~~~~~~~~~~l~~i~~-~~g~s~~-~~--~vsl~~i~~~~g~~~~G~lsD~~grr~~~~R  204 (366)
                      ++..++++.+|.+.+..++.......+..++|.+.+ .+|++.. ..  +.++..++.++|.+++|+++||+++++..  
T Consensus       225 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~~g~~~~~~~ig~~~g~~~~g~l~~r~~~~~~~--  302 (1146)
T PRK08633        225 LKLLRSDRVLWLAIIGLSYFWFISQLAQANFPAYAKEVLGLDNTFQVQYLLAASAIGIGIGSLLAGRLSGRHIELGLV--  302 (1146)
T ss_pred             HHHHhcCcHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhCCCcHHHHHHHHHHHHHHHHHHHHHHHHHhCCceEccch--
Confidence            445667777887766666655555556667777765 4788766 43  67777888889999999999999876554  


Q ss_pred             hHHHHHHHHHHHHHHHHHHh-hhhHHHHHHHHHHHHHHhhhhhhHHHHHHHhhCCCchhhHHHHHHhhhhhhHHhhhhHH
Q 017754          205 PVAMAVAQVVMAFALLYYAI-GWPGEIYVTTVLVGLSYGAHWAIVPAAASELFGLKSFGALYNFLTLASPAGSLIFSGVI  283 (366)
Q Consensus       205 ~~~~~~~~~~~~~~~~l~~~-~~~~~l~~~~~l~G~~~g~~~~~~~~~~se~f~~~~~g~~~g~~~~~~~~G~~i~gp~l  283 (366)
                          .++.++++++.+++.. .+...++++.+++|++.+...+...+++.+.++.+.+|+++++.++...+|..+ ++.+
T Consensus       303 ----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~~rg~~~~~~~~~~~lg~~~-~~~~  377 (1146)
T PRK08633        303 ----PLGALGLALSLFLLPTAPSLASVLVLFFLFGFSAGLFIVPLNALIQFRAPEKELGKVLAANNFLQNVGMLL-FLAL  377 (1146)
T ss_pred             ----hHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHhhHHHHHHHhhcCCccchhhhhHHHHHHHHHHHHH-HHHH
Confidence                4455555555555442 344455677788899888888888889999999999999999999999998875 6666


Q ss_pred             HHHHHh
Q 017754          284 ASGIYD  289 (366)
Q Consensus       284 ~G~l~d  289 (366)
                      ++.+..
T Consensus       378 ~~~l~~  383 (1146)
T PRK08633        378 TTLFSG  383 (1146)
T ss_pred             HHHHHH
Confidence            665543

>PRK09669 putative symporter YagG; Provisional

Probab=99.07  E-value=8.3e-09  Score=102.93  Aligned_cols=157  Identities=14%  Similarity=0.093  Sum_probs=103.6

Q ss_pred             HHHHhhhhhHHHHHHHHHHhhhhHHHHHhcHHHHHHHh-CCChhHH-HHHHHHHHHhhhhhhhhhhhhhhhhhccCchhH
Q 017754          129 LPQALMKADFLLLFFSLVLASGSGLTVIDNLGQICQSL-GYADTSI-YVSMISIWNFLGRVGGGYFSEAIVRKFAYPRPV  206 (366)
Q Consensus       129 ~~~~l~~~~~~ll~~~~~~~~~~~~~~~~~l~~i~~~~-g~s~~~~-~vsl~~i~~~~g~~~~G~lsD~~grr~~~~R~~  206 (366)
                      +++.++++.+|.+++..++.............++.+.. +...... +.....+...++.+++++++||+|+|+..    
T Consensus       222 ~~~~~~n~~~~~l~~~~~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~i~~ii~~~~~~~l~~r~gk~~~~----  297 (444)
T PRK09669        222 LKLLLGNSQWRIMFIFNVVLLTAVVTRGGATLYYVNYVLLRPDLATLFLVTGMIAGLFGALLSERLLGKFDRVRAF----  297 (444)
T ss_pred             HHHHhCCchHHHHHHHHHHHHHHHHHHhhhhheeeeeecCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhChHHHH----
Confidence            55678899988877666554433332222233333322 2222222 44445567778889999999999987655    


Q ss_pred             HHHHHHHHHHH-HHHHHH--hhhhHHHHHHHHHHHHHHhhhhhhHHHHHHHhh-------CCCchhhHHHHHHhhhhhhH
Q 017754          207 AMAVAQVVMAF-ALLYYA--IGWPGEIYVTTVLVGLSYGAHWAIVPAAASELF-------GLKSFGALYNFLTLASPAGS  276 (366)
Q Consensus       207 ~~~~~~~~~~~-~~~l~~--~~~~~~l~~~~~l~G~~~g~~~~~~~~~~se~f-------~~~~~g~~~g~~~~~~~~G~  276 (366)
                        ..+.++.++ +..++.  ..+...+++..++.|++.+...++.+++++|..       |.+..|..++..+....+|.
T Consensus       298 --~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~g~~~~~~~~~~~am~ad~~d~~e~~~G~r~~g~~~s~~~~~~klg~  375 (444)
T PRK09669        298 --KWTIVAFVILSALIFFIPPSNVWLIFALNILFNFIQNLTTPLQWSMFSDVVDYEEKRSGRRLDGLVFSTNLFAIKLGL  375 (444)
T ss_pred             --HHHHHHHHHHHHHHHHhCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhcCcCcchHHHHHHHHHHHHHH
Confidence              333333322 221222  223445566777889999999999999999887       34556888899999999999


Q ss_pred             HhhhhHHHHHHHhhhh
Q 017754          277 LIFSGVIASGIYDYYA  292 (366)
Q Consensus       277 ~i~gp~l~G~l~d~~~  292 (366)
                      .+ |+.++|.+.|..|
T Consensus       376 al-g~~i~g~ll~~~G  390 (444)
T PRK09669        376 AI-GGAVVGWILAWVD  390 (444)
T ss_pred             HH-HHHHHHHHHHHcC
Confidence            96 9999999999875

>KOG0255 consensus Synaptic vesicle transporter SVOP and related transporters (major facilitator superfamily) [General function prediction only]

Probab=99.06  E-value=1.5e-09  Score=110.57  Aligned_cols=127  Identities=14%  Similarity=0.012  Sum_probs=108.1

Q ss_pred             HHHHHHHHHhhhhhhhhhhhhhhhhhccCchhHHHHHHHHHHHHHHHHHH-hhhhHHHHHHHHHHHHHHhhhhhhHHHHH
Q 017754          174 YVSMISIWNFLGRVGGGYFSEAIVRKFAYPRPVAMAVAQVVMAFALLYYA-IGWPGEIYVTTVLVGLSYGAHWAIVPAAA  252 (366)
Q Consensus       174 ~vsl~~i~~~~g~~~~G~lsD~~grr~~~~R~~~~~~~~~~~~~~~~l~~-~~~~~~l~~~~~l~G~~~g~~~~~~~~~~  252 (366)
                      ..+++.++..+|.+++|++||++|||+.+      ..++++..++.+..+ ..+...+++.+++.|++.++.......++
T Consensus       123 ~~s~~~~G~~vG~~i~g~lsD~~GRk~~~------~~~~~~~~i~~~~~a~a~~~~~~~~~Rfl~G~~~~~~~~~~~~~~  196 (521)
T KOG0255|consen  123 GQSLFFLGVLVGSLIFGPLSDRFGRKPVL------LVSLLLFIIFGILTAFAPNYWMFLIFRFLSGFFGSGPLTVGFGLV  196 (521)
T ss_pred             HHHHHHHHHHHHHhhheehHhhcccHHHH------HHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHhhccchhHHhHhhh
Confidence            78888999999999999999999998877      677777776666655 45667889999999999999999999999


Q ss_pred             HHhhCCCchhhHHHHHHhhhhhhHHhhhhHHHHHHHhhhhhhhhhhhhhccCCCCCcccCCCCCCcccCCcchHHHHHHH
Q 017754          253 SELFGLKSFGALYNFLTLASPAGSLIFSGVIASGIYDYYAEKQAGLLWKYNGNMLPVSFRDQETPTCLGSICYSITCGIM  332 (366)
Q Consensus       253 se~f~~~~~g~~~g~~~~~~~~G~~i~gp~l~G~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~g~~~~~~~f~i~  332 (366)
                      +|++++++|+.+..+ ......++.+ ++.+++++..  +                                ||+.+++.
T Consensus       197 ~E~~~~~~R~~~~~~-~~~~~~~~~~-~~~~~a~~~~--~--------------------------------Wr~~~~~~  240 (521)
T KOG0255|consen  197 AEIVSPKQRGLALTL-GGFFFVGGLM-LPAGAAYITR--D--------------------------------WRWLFWII  240 (521)
T ss_pred             eeecCcchhhHHHHH-HHHHHHHHHH-HHHHHHHHHh--h--------------------------------HHHHHHHH
Confidence            999999999999999 7777777775 7888888876  3                                99999998


Q ss_pred             HHHHHHHHHH
Q 017754          333 AGLCIIAMVM  342 (366)
Q Consensus       333 ~~~~~~~~~~  342 (366)
                      ...+++..+.
T Consensus       241 ~~~~~~~~~~  250 (521)
T KOG0255|consen  241 SIPSGLFLLL  250 (521)
T ss_pred             HHHHHHHHHH
Confidence            8888776666

>COG2270 Permeases of the major facilitator superfamily [General function prediction only]

Probab=99.06  E-value=4.5e-09  Score=101.64  Aligned_cols=180  Identities=18%  Similarity=0.234  Sum_probs=133.9

Q ss_pred             HHHHhhhhhHHHHHHHHHHhhhhHHHHHhcHHHHHH-HhCCChhHH--HHHHHHHHHhhhhhhhhhhhhhhhhhccCchh
Q 017754          129 LPQALMKADFLLLFFSLVLASGSGLTVIDNLGQICQ-SLGYADTSI--YVSMISIWNFLGRVGGGYFSEAIVRKFAYPRP  205 (366)
Q Consensus       129 ~~~~l~~~~~~ll~~~~~~~~~~~~~~~~~l~~i~~-~~g~s~~~~--~vsl~~i~~~~g~~~~G~lsD~~grr~~~~R~  205 (366)
                      ++++.+..+...+.++.+...-...+.......+.. ++|++..+.  +....++..++|.+++|++.||++-|...   
T Consensus       245 ~k~i~~~~~i~~FLiA~~~~~DGv~til~~~~~fg~~~~gls~~~lll~g~~~~vvA~lg~ii~g~Ld~rfg~k~vl---  321 (438)
T COG2270         245 FKEIRGRKNLVLFLIARFFYIDGVNTILAMGGVFGAADLGLSSTELLLIGIALSVVAALGAIIAGFLDERFGSKPVL---  321 (438)
T ss_pred             HHHHhcccchHHHHHHHHHHHhhHHHHHHHHHHHHHHHcCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCceee---
Confidence            455555555666666655554433445555555666 789998887  66677888999999999999999988655   


Q ss_pred             HHHHHHHHHHHHHHHH-HHhhhhHHHHHHHHHHHHHHhhhhhhHHHHHHHhhCCCchhhHHHHHHhhhhhhHHhhhhHHH
Q 017754          206 VAMAVAQVVMAFALLY-YAIGWPGEIYVTTVLVGLSYGAHWAIVPAAASELFGLKSFGALYNFLTLASPAGSLIFSGVIA  284 (366)
Q Consensus       206 ~~~~~~~~~~~~~~~l-~~~~~~~~l~~~~~l~G~~~g~~~~~~~~~~se~f~~~~~g~~~g~~~~~~~~G~~i~gp~l~  284 (366)
                         .++.++..+..+. +....+....++..++|++.|+..+..=++.+++.|+++-+..+|+.++.+..++.+ ||.+.
T Consensus       322 ---~~~lvi~~~~~~~~~~~~~~~~f~i~gll~g~s~G~~qA~SRSy~~~lvp~~k~~~fFglyaltgra~S~~-gp~lv  397 (438)
T COG2270         322 ---MIGLVILSIAALYLIFLEGELDFWILGLLVGTSLGGAQASSRSYLARLVPKGKEGRFFGLYALTGRAASFL-GPFLV  397 (438)
T ss_pred             ---hHHHHHHHHHHHHHHHccccHHHHHHHHHHHHhcchHHHHHHHHHHHhCCCccccceeehhhhhhhHHHHH-HHHHH
Confidence               4444444433333 333345566777789999999999999999999999999999999999999999995 99999


Q ss_pred             HHHHhhhhhhhhhhhhhccCCCCCcccCCCCCCcccCCcchHHHHHHHHHHHHHHHHHHHHH
Q 017754          285 SGIYDYYAEKQAGLLWKYNGNMLPVSFRDQETPTCLGSICYSITCGIMAGLCIIAMVMSLIV  346 (366)
Q Consensus       285 G~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~g~~~~~~~f~i~~~~~~~~~~~~~~~  346 (366)
                      +.+.|.++                               +-|..+..+.++..++.++.+.+
T Consensus       398 ~v~t~iTg-------------------------------~~r~g~~~i~vll~iGl~~L~~v  428 (438)
T COG2270         398 AVITQITG-------------------------------SSRAGVLSIIVLLLIGLLLLLRV  428 (438)
T ss_pred             HHHHHHhc-------------------------------chhhHHHHHHHHHHhhHhhEEee
Confidence            99999998                               36777777776666666554443

>PF03825 Nuc_H_symport: Nucleoside H+ symporter

Probab=99.06  E-value=1.7e-08  Score=99.45  Aligned_cols=159  Identities=19%  Similarity=0.195  Sum_probs=111.2

Q ss_pred             CHHHHhhhhhHHHHHHHHHHhhhhHHHHHhcHHHHHHHhC-CChhHH--HHHHHHHHHhhhhhhhhhhhhhhhhhccCch
Q 017754          128 TLPQALMKADFLLLFFSLVLASGSGLTVIDNLGQICQSLG-YADTSI--YVSMISIWNFLGRVGGGYFSEAIVRKFAYPR  204 (366)
Q Consensus       128 ~~~~~l~~~~~~ll~~~~~~~~~~~~~~~~~l~~i~~~~g-~s~~~~--~vsl~~i~~~~g~~~~G~lsD~~grr~~~~R  204 (366)
                      +..+.+|+|+++++++..++.......+.++.+.+.++.| ++....  ..++-.+...+.-...+++..|+|.|+.   
T Consensus       199 ~~~~llk~~~~~~Fll~~~l~~~~~~~~~~f~~~yl~~~gg~~~~~~g~~~~l~~~aEi~~f~~~~~~~~r~g~~~l---  275 (400)
T PF03825_consen  199 DALKLLKNPRFLVFLLAAFLIGISHAAYYTFFSIYLQELGGYSGSTIGILWALGVVAEIPFFFFSGRFLKRFGIKWL---  275 (400)
T ss_pred             HHHHHhcCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccchhhHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHH---
Confidence            3457899999988777777766666667777888899988 665443  3444444455554555555555554433   


Q ss_pred             hHHHHHHHHHHHHHHHHHHhh-hh-HHHHHH----HHHHHHHHhhhhhhHHHHHHHhhCCCchhhHHHHHHh-hhhhhHH
Q 017754          205 PVAMAVAQVVMAFALLYYAIG-WP-GEIYVT----TVLVGLSYGAHWAIVPAAASELFGLKSFGALYNFLTL-ASPAGSL  277 (366)
Q Consensus       205 ~~~~~~~~~~~~~~~~l~~~~-~~-~~l~~~----~~l~G~~~g~~~~~~~~~~se~f~~~~~g~~~g~~~~-~~~~G~~  277 (366)
                         +.++.+..++=..+++.. ++ ...++.    -.+.|+++|..+.....++.+..|++.++++.++.+. ...+|..
T Consensus       276 ---l~~a~~~~~vR~~l~a~~~~~~~~~~~~~~l~q~lhG~tf~~~~~a~~~yi~~~~p~~~~at~Q~l~~~~~~Glg~~  352 (400)
T PF03825_consen  276 ---LLLALVAYAVRWLLYAYFSDPWPFIVALQLLGQLLHGLTFGLFHAASVRYIDRIAPPELRATAQGLYSALSFGLGGA  352 (400)
T ss_pred             ---HHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHhCCccchHHHHHHHHHHHhhHHHH
Confidence               355666655555555533 23 222222    2458999999999899999999999999999999876 4678999


Q ss_pred             hhhhHHHHHHHhhhhh
Q 017754          278 IFSGVIASGIYDYYAE  293 (366)
Q Consensus       278 i~gp~l~G~l~d~~~~  293 (366)
                      + |..++|+++|+.+.
T Consensus       353 i-G~~igG~l~~~~g~  367 (400)
T PF03825_consen  353 I-GSLIGGWLYDAFGA  367 (400)
T ss_pred             H-HHHHHHHHHHHhcc
Confidence            6 99999999999873

>TIGR00711 efflux_EmrB drug resistance transporter, EmrB/QacA subfamily

Probab=99.05  E-value=6.1e-09  Score=104.35  Aligned_cols=155  Identities=12%  Similarity=0.094  Sum_probs=119.2

Q ss_pred             HHHhhhhhHHHHHHHHHHhhhhHHHHHhcHHHHHHH-hCCChhHH--HHHHHHHHHhhhhhhhhhhhhhhhhhccCchhH
Q 017754          130 PQALMKADFLLLFFSLVLASGSGLTVIDNLGQICQS-LGYADTSI--YVSMISIWNFLGRVGGGYFSEAIVRKFAYPRPV  206 (366)
Q Consensus       130 ~~~l~~~~~~ll~~~~~~~~~~~~~~~~~l~~i~~~-~g~s~~~~--~vsl~~i~~~~g~~~~G~lsD~~grr~~~~R~~  206 (366)
                      .+.++++.++...+..++..........++|++.++ +|++..+.  ......++..+++++.|+++||++||+..    
T Consensus       249 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~~r~~~~~~~----  324 (485)
T TIGR00711       249 LRLFKYRNFTIGCVYMSLLGLGLYGSFYLLPLYLQQVLGYTALQAGLHILPVGLAPMLSSPIAGRMGDKIDPRKLV----  324 (485)
T ss_pred             HHHHcCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCcHHHH----
Confidence            457788888887777666666666667788988876 68887665  66677888999999999999999886544    


Q ss_pred             HHHHHHHHHHHHHHHHHh----h-hhHHHHHHHHHHHHHHhhhhhhHHHHHHHhhCCCchhhHHHHHHhhhhhhHHhhhh
Q 017754          207 AMAVAQVVMAFALLYYAI----G-WPGEIYVTTVLVGLSYGAHWAIVPAAASELFGLKSFGALYNFLTLASPAGSLIFSG  281 (366)
Q Consensus       207 ~~~~~~~~~~~~~~l~~~----~-~~~~l~~~~~l~G~~~g~~~~~~~~~~se~f~~~~~g~~~g~~~~~~~~G~~i~gp  281 (366)
                        .++..+++++.+++..    . +...+++..++.|++.+..++.....+.+.+|++++|.+.++.+....+|+.+ |+
T Consensus       325 --~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~g~~i-g~  401 (485)
T TIGR00711       325 --TIGLILYAVGFYWRAFTFTPDTPFLAIALPQFIRGFGMGCFFMPLTTIALSGLPPHKIARGSSLSNFTRQLGGSI-GT  401 (485)
T ss_pred             --HHHHHHHHHHHHHHhccCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHhHHHHHHHHHHHHHHHH-HH
Confidence              5566666666655441    1 22345556778889888877666677778889999999999999999999996 99


Q ss_pred             HHHHHHHhhh
Q 017754          282 VIASGIYDYY  291 (366)
Q Consensus       282 ~l~G~l~d~~  291 (366)
                      .+.|.++++.
T Consensus       402 ~i~g~~~~~~  411 (485)
T TIGR00711       402 ALITTILTNR  411 (485)
T ss_pred             HHHHHHHHHH
Confidence            9999998854

This subfamily of drug efflux proteins, a part of the major faciliator family, is predicted to have 14 potential membrane-spanning regions. Members with known activities include EmrB (multiple drug resistance efflux pump) in E. coli, FarB (antibacterial fatty acid resistance) in Neisseria gonorrhoeae, TcmA (tetracenomycin C resistance) in Streptomyces glaucescens, etc. In most cases, the efflux pump is described as having a second component encoded in the same operon, such as EmrA of E. coli.

>PRK09848 glucuronide transporter; Provisional

Probab=99.05  E-value=8.6e-09  Score=102.89  Aligned_cols=157  Identities=12%  Similarity=0.074  Sum_probs=110.0

Q ss_pred             HHHHhhhhhHHHHHHHHHHhhhhHHHHHhcHHHHHHH-hCCChhHH-HHHHH-HHHHhhhhhhhhhhhhhhhhhccCchh
Q 017754          129 LPQALMKADFLLLFFSLVLASGSGLTVIDNLGQICQS-LGYADTSI-YVSMI-SIWNFLGRVGGGYFSEAIVRKFAYPRP  205 (366)
Q Consensus       129 ~~~~l~~~~~~ll~~~~~~~~~~~~~~~~~l~~i~~~-~g~s~~~~-~vsl~-~i~~~~g~~~~G~lsD~~grr~~~~R~  205 (366)
                      +++.++++.++.+.+..++............|++.++ +|.+.... +.... .+...++.+++++++||+++|+.+   
T Consensus       221 ~~~l~~n~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~l~~~l~~r~g~~~~~---  297 (448)
T PRK09848        221 LQTLKRNRPLFMLCIGALCVLISTFAVSASSLFYVRYVLNDTGLFTVLVLVQNLVGTVASAPLVPGMVARIGKKNTF---  297 (448)
T ss_pred             HHHHhCCchHHHHHHHHHHHHHHHHHHhhhheeeEeeecCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcHHHH---
Confidence            4567889999887777666665555555556666554 56554333 22222 455677889999999999887655   


Q ss_pred             HHHHHHHHHHHHHHHHHHhh---hhHHHHHHHHHHHHHHhhhhhhHHHHHHHhhCC-------CchhhHHHHHHhhhhhh
Q 017754          206 VAMAVAQVVMAFALLYYAIG---WPGEIYVTTVLVGLSYGAHWAIVPAAASELFGL-------KSFGALYNFLTLASPAG  275 (366)
Q Consensus       206 ~~~~~~~~~~~~~~~l~~~~---~~~~l~~~~~l~G~~~g~~~~~~~~~~se~f~~-------~~~g~~~g~~~~~~~~G  275 (366)
                         .++.++.+++.+++...   +...+++..++.|+|.+...+...++.+|..+.       +..|..+++.++...+|
T Consensus       298 ---~~g~~~~~i~~~~~~~~~~~~~~~~~~~~~l~g~G~~~~~~~~~al~~~~~~~~~~~~g~r~~G~~~~~~~~~~klg  374 (448)
T PRK09848        298 ---LIGALLGTCGYLLFFWVSVWSLPVALVALAIASIGQGVTMTVMWALEADTVEYGEYLTGVRIEGLTYSLFSFTRKCG  374 (448)
T ss_pred             ---HHHHHHHHHHHHHHHHcCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHhhCccchhHHHHHHHHHHHHH
Confidence               55556656655554421   223445566778888888888888888877643       45699999999999999


Q ss_pred             HHhhhhHHHHHHHhhhh
Q 017754          276 SLIFSGVIASGIYDYYA  292 (366)
Q Consensus       276 ~~i~gp~l~G~l~d~~~  292 (366)
                      ..+ |+.+.|.+.+..|
T Consensus       375 ~ai-g~~i~g~~l~~~G  390 (448)
T PRK09848        375 QAI-GGSIPAFILGLSG  390 (448)
T ss_pred             HHH-HHHHHHHHHHHcC
Confidence            996 9999999987754

>KOG0569 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism]

Probab=99.03  E-value=2.9e-08  Score=99.19  Aligned_cols=190  Identities=16%  Similarity=0.101  Sum_probs=122.5

Q ss_pred             CCCCHHHHhhhhh----HHHHHHHHHHhhhhHH-HHHhcHHHHHHHhCCChhHH--HHHHHHHHHhhhhhhhhhhhhhhh
Q 017754          125 EDFTLPQALMKAD----FLLLFFSLVLASGSGL-TVIDNLGQICQSLGYADTSI--YVSMISIWNFLGRVGGGYFSEAIV  197 (366)
Q Consensus       125 ~~~~~~~~l~~~~----~~ll~~~~~~~~~~~~-~~~~~l~~i~~~~g~s~~~~--~vsl~~i~~~~g~~~~G~lsD~~g  197 (366)
                      ++.+++|.++++.    .++.+...++...++. ....+.-.+.++.|++...+  .....++.+.+..+++.++.||+|
T Consensus       254 ~~~sl~~~~~~~~lR~~~~i~~~v~~~qq~sGi~ai~~Yst~i~~~aG~~~~~a~~an~~~g~v~~~~t~~~~~lid~~g  333 (485)
T KOG0569|consen  254 KQISLRQLLKNPTLRRPLLIGIVVSFAQQFSGINAIFFYSTSIFKTAGFTPEEAQYANLGIGIVNLLSTLVSPFLIDRLG  333 (485)
T ss_pred             cCCcHHHHhcCcchhHHHHHHHHHHHHHHhcCcceeHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence            5567888887753    2333333444444443 33334445778889887755  677778889999999999999999


Q ss_pred             hhccCchhHHHHHHHHHHHHHHHHHH-------hhhhHHH---HHHHHHHHHHHhh-hhhhHHHHHHHhhCCCchhhHHH
Q 017754          198 RKFAYPRPVAMAVAQVVMAFALLYYA-------IGWPGEI---YVTTVLVGLSYGA-HWAIVPAAASELFGLKSFGALYN  266 (366)
Q Consensus       198 rr~~~~R~~~~~~~~~~~~~~~~l~~-------~~~~~~l---~~~~~l~G~~~g~-~~~~~~~~~se~f~~~~~g~~~g  266 (366)
                      ||+..      ..+..++++..+++.       ...++..   +++.+++.++++. .-++.+-+.+|+|+.+.|+.+..
T Consensus       334 RRpLl------l~~~~~~~~~~~~~~~~~~l~~~~~~~~~y~~i~~~~~~~~~f~~G~gpi~~fi~aELf~~~~R~aa~s  407 (485)
T KOG0569|consen  334 RRPLL------LISLSLMAVALLLMSIALFLSNSFGSWLSYLCIAAIFLFIISFAIGPGPIPWFIGAELFPQSARSAAQS  407 (485)
T ss_pred             CcHHH------HHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhhhcCCCchhHHHHHHhCCccchHHHHH
Confidence            97655      333333333333322       1112222   2333334433332 24666779999999999999999


Q ss_pred             HHHhhhhhhHHhhhhHHHHHHHhhhhhhhhhhhhhccCCCCCcccCCCCCCcccCCcchHHHHHHHHHHHHHHHHHHHHH
Q 017754          267 FLTLASPAGSLIFSGVIASGIYDYYAEKQAGLLWKYNGNMLPVSFRDQETPTCLGSICYSITCGIMAGLCIIAMVMSLIV  346 (366)
Q Consensus       267 ~~~~~~~~G~~i~gp~l~G~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~g~~~~~~~f~i~~~~~~~~~~~~~~~  346 (366)
                      +....+-+..++ -+..+-.+++..|                                 ...|.+..+.+++..+..+..
T Consensus       408 ~~~~~~w~~~fi-v~~~fp~l~~~~g---------------------------------~~~filF~i~~~~~~i~~~~~  453 (485)
T KOG0569|consen  408 VATAVNWLSNFI-VGFAFPPLQNVIG---------------------------------PYVFILFVIPLAIFLIYLYRY  453 (485)
T ss_pred             HHHHHHHHHHHH-HHHHHHHHHHHhc---------------------------------chhhHHHHHHHHHHHHHHHHh
Confidence            999988888886 3455555555554                                 145677777788878888888


Q ss_pred             hhhchHHH
Q 017754          347 VHRTKSVY  354 (366)
Q Consensus       347 ~~~~r~~~  354 (366)
                      .++||.+.
T Consensus       454 lPETkgr~  461 (485)
T KOG0569|consen  454 LPETKGRT  461 (485)
T ss_pred             CcccCCCC
Confidence            88888544

>PF01306 LacY_symp: LacY proton/sugar symporter; InterPro: IPR022814 In bacteria there are a number of families of transport proteins, including symporters and antiporters, that mediate the intake of a variety of sugars with the concomitant uptake of hydrogen ions (proton symporters) []

Probab=99.03  E-value=1.5e-07  Score=92.27  Aligned_cols=182  Identities=15%  Similarity=0.098  Sum_probs=129.5

Q ss_pred             HHHHhhhhhHHHHHHHHHHhhhhHHHHHhcHHHHHHHhCCCh----hHH--HHHHHHHHHhhhhhhhhhhhhhhhhhccC
Q 017754          129 LPQALMKADFLLLFFSLVLASGSGLTVIDNLGQICQSLGYAD----TSI--YVSMISIWNFLGRVGGGYFSEAIVRKFAY  202 (366)
Q Consensus       129 ~~~~l~~~~~~ll~~~~~~~~~~~~~~~~~l~~i~~~~g~s~----~~~--~vsl~~i~~~~g~~~~G~lsD~~grr~~~  202 (366)
                      ..+.+|+++||.+.+...........+..-.+.+.+.+--+.    ...  ..++-.+..++.-.+..++-+|+|.|+..
T Consensus       213 ~~~l~k~~~fw~~~l~v~g~~~~Y~vfdqqf~~y~~~~f~~~~~g~~~~G~l~s~~v~~E~~~m~~~p~li~rig~k~~L  292 (412)
T PF01306_consen  213 VLSLFKMRNFWFFVLFVIGVAAIYDVFDQQFPIYFASFFQSAGQGNQMYGYLWSVQVFLEALMMFFSPWLINRIGAKNLL  292 (412)
T ss_dssp             HHHHTTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHH
T ss_pred             HHHHhcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccChhHHhHHHHHHHHHHHHHHHHHHHHHHhcChHhHH
Confidence            457789999998765544333333344444555555543222    222  56666677777788888899999988766


Q ss_pred             chhHHHHHHHHHHHHHHHHHH-hhhhHHHHHHHHHHHHHHhhhhhhHHHHHHHhhCCCchhhHHHHH-HhhhhhhHHhhh
Q 017754          203 PRPVAMAVAQVVMAFALLYYA-IGWPGEIYVTTVLVGLSYGAHWAIVPAAASELFGLKSFGALYNFL-TLASPAGSLIFS  280 (366)
Q Consensus       203 ~R~~~~~~~~~~~~~~~~l~~-~~~~~~l~~~~~l~G~~~g~~~~~~~~~~se~f~~~~~g~~~g~~-~~~~~~G~~i~g  280 (366)
                            .++.+++++=..+.+ .+++..+.+.-.+-|+-.+.......-++++.|+.|..++.|.+. +.+..+|..+ .
T Consensus       293 ------llag~i~~iRi~~~~~~~~~~~i~~~klLH~~e~~l~lva~fkYI~~~fd~rlsAt~y~v~~~~~~~~~~~i-~  365 (412)
T PF01306_consen  293 ------LLAGVIMAIRIIGSGFATNPWVISLIKLLHALEFPLLLVAAFKYITAHFDKRLSATLYLVGFQFAKQIGIII-L  365 (412)
T ss_dssp             ------HHHHHHHHHHHHHHHT--SHHHHHHHHHHHHHHHHHHHHHHHHHHHHHS-GGGHHHHHHHHHTTTHHHHHHH-H
T ss_pred             ------HHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHhHHHHHHHHHHHHHHHHHHHH-H
Confidence                  666666776666666 456667777778888887777777777999999999999999985 6788899987 5


Q ss_pred             hHHHHHHHhhhhhhhhhhhhhccCCCCCcccCCCCCCcccCCcchHHHHHHHHHHHHHHHHHHHHHhhh
Q 017754          281 GVIASGIYDYYAEKQAGLLWKYNGNMLPVSFRDQETPTCLGSICYSITCGIMAGLCIIAMVMSLIVVHR  349 (366)
Q Consensus       281 p~l~G~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~g~~~~~~~f~i~~~~~~~~~~~~~~~~~~  349 (366)
                      +.++|++||+.|                                |+.+|++++++.+...+++.+..++
T Consensus       366 s~~~G~lyd~~G--------------------------------~~~tylimg~iv~~~~li~~f~l~~  402 (412)
T PF01306_consen  366 SPLAGYLYDRIG--------------------------------FQHTYLIMGLIVLPFTLISAFTLKK  402 (412)
T ss_dssp             HHHHHHHHHHHH--------------------------------HHHHHHHHHHHHHHHHHHHHHHS--
T ss_pred             hhhHHhhHhhcC--------------------------------cHHHHHHHHHHHHHHHHHheeeecC
Confidence            788999999998                                9999999998887777777666544

The lacY family of Escherichia coli and Klebsiella pneumoniae are proton/beta-galactoside symporters, which, like most sugar transporters, are integral membrane proteins with 12 predicted transmembrane (TM) regions. Also similar to the lacY family are the rafinose (rafB) and sucrose (cscB) permeases from E. coli []. This entry also includes bacterial phenylproprionate permease.; PDB: 1PV7_B 1PV6_A 2Y5Y_B 2CFQ_A 2V8N_B 2CFP_A.

>TIGR00710 efflux_Bcr_CflA drug resistance transporter, Bcr/CflA subfamily

Probab=99.02  E-value=2.5e-08  Score=96.51  Aligned_cols=151  Identities=16%  Similarity=0.077  Sum_probs=100.9

Q ss_pred             HHHHhhhhhHHHHHHHHHHhhhhHHHHHhcHHHHHH-HhCCChhHH--HHHHHHHHHhhhhhhhhhhhhhhhhhccCchh
Q 017754          129 LPQALMKADFLLLFFSLVLASGSGLTVIDNLGQICQ-SLGYADTSI--YVSMISIWNFLGRVGGGYFSEAIVRKFAYPRP  205 (366)
Q Consensus       129 ~~~~l~~~~~~ll~~~~~~~~~~~~~~~~~l~~i~~-~~g~s~~~~--~vsl~~i~~~~g~~~~G~lsD~~grr~~~~R~  205 (366)
                      +++.++++.+|...+...+.......+..+.|.+.+ .+|++....  ..+...++..+++++.|+++||+++|+..   
T Consensus       199 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~g~l~~~~~~~~~~---  275 (385)
T TIGR00710       199 FLLLLKSKMFWGYALIYGASFGGFFAFFSGAPFVYIDIMGVSPSVFGLLFALNIIAMIFGGFLNGRFIKKWGAKSLL---  275 (385)
T ss_pred             HHHHHcCchhHHHHHHHHHHHHHHHHHHHcChHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHH---
Confidence            345677888887766655555555556666777665 678887655  66777888999999999999999987654   


Q ss_pred             HHHHHHHHHHHHHHHHHHh----h-h-hHHHHHHHHHHHHHHhhhhhhHHHHHHHhhCCCchhhHHHHHHhhhhhhHHhh
Q 017754          206 VAMAVAQVVMAFALLYYAI----G-W-PGEIYVTTVLVGLSYGAHWAIVPAAASELFGLKSFGALYNFLTLASPAGSLIF  279 (366)
Q Consensus       206 ~~~~~~~~~~~~~~~l~~~----~-~-~~~l~~~~~l~G~~~g~~~~~~~~~~se~f~~~~~g~~~g~~~~~~~~G~~i~  279 (366)
                         ..+.+++.++.+++..    . . ...++...++.|++.+...+.......|.+| +.+|++.++.+.....++.+.
T Consensus       276 ---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~-~~~g~~~~~~~~~~~~~g~i~  351 (385)
T TIGR00710       276 ---RMGLILFAVSAVLLEITAILGLGSWAMIIGPMMFVGIGNSMISSIAMAYALEDFP-HVAGTASALFGTLRLVLGAIV  351 (385)
T ss_pred             ---HHHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHHHHHHHhccCc-ccchHHHHHHHHHHHHHHHHH
Confidence               3334444433333221    1 1 1233445566788888888888888888886 678999999887776655543


Q ss_pred             hhHHHHHH
Q 017754          280 SGVIASGI  287 (366)
Q Consensus       280 gp~l~G~l  287 (366)
                      +| +.|.+
T Consensus       352 ~~-~~~~~  358 (385)
T TIGR00710       352 GY-LVSLI  358 (385)
T ss_pred             HH-HHHhc
Confidence            44 45544

This subfamily of drug efflux proteins, a part of the major faciliator family, is predicted to have 12 membrane-spanning regions. Members with known activity include Bcr (bicyclomycin resistance protein) in E. coli, Flor (chloramphenicol and florfenicol resistance) in Salmonella typhimurium DT104, and CmlA (chloramphenicol resistance) in Pseudomonas sp. plasmid R1033.

>COG2223 NarK Nitrate/nitrite transporter [Inorganic ion transport and metabolism]

Probab=99.01  E-value=5.6e-09  Score=100.91  Aligned_cols=173  Identities=17%  Similarity=0.173  Sum_probs=125.9

Q ss_pred             hHHHHHHHHHHhhhhHHHHHhcHHHHHHHhCCChhHH--HHHHHHHHHhhhhhhhhhhhhhhhhhccCchhHHHHHHHHH
Q 017754          137 DFLLLFFSLVLASGSGLTVIDNLGQICQSLGYADTSI--YVSMISIWNFLGRVGGGYFSEAIVRKFAYPRPVAMAVAQVV  214 (366)
Q Consensus       137 ~~~ll~~~~~~~~~~~~~~~~~l~~i~~~~g~s~~~~--~vsl~~i~~~~g~~~~G~lsD~~grr~~~~R~~~~~~~~~~  214 (366)
                      ..|+-++++..+....+......+++-+++|+|..+.  ++++..+.+.+.|+..|++.||+|-|+..      .+.+++
T Consensus        15 ~L~~S~~af~v~F~VW~l~s~l~~~i~~~~~LS~~q~~ll~aiPil~GallRl~~g~l~drfGgR~~~------~~s~~l   88 (417)
T COG2223          15 NLWLSTLAFDVGFMVWTLFSPLGVFIKSDFGLSEGQKGLLVAIPILVGALLRLPYGFLTDRFGGRKWT------ILSMLL   88 (417)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhhhccccCCCHHHHHHHHHHHHHHhHHHHHHHHhhhcccCchHHH------HHHHHH
Confidence            3454444544444445555555666778899998887  89999999999999999999999987766      666666


Q ss_pred             HHHHHHHHH--hhhh--HHHHHHHHHHHHHHhhhhhhHHHHHHHhhCCCchhhHHHHHHhhhhhhHHhhhhHHHHHHHhh
Q 017754          215 MAFALLYYA--IGWP--GEIYVTTVLVGLSYGAHWAIVPAAASELFGLKSFGALYNFLTLASPAGSLIFSGVIASGIYDY  290 (366)
Q Consensus       215 ~~~~~~l~~--~~~~--~~l~~~~~l~G~~~g~~~~~~~~~~se~f~~~~~g~~~g~~~~~~~~G~~i~gp~l~G~l~d~  290 (366)
                      +.+.++.++  ..++  +.++++.++.|++ |+.++...+.++..||+++.|.+.|+.. ++++|..+ ...++-.+...
T Consensus        89 ~~IP~~~~~~a~~~~~~~~ll~~gll~G~~-GasFav~m~~~s~~fP~~~qG~AlGI~g-~GN~G~av-~q~~~P~v~~~  165 (417)
T COG2223          89 LLIPCLGLAFAVTYPSTWQLLVIGLLLGLA-GASFAVGMPNASFFFPKEKQGLALGIAG-AGNLGVAV-AQLVAPLVAVA  165 (417)
T ss_pred             HHHHHHHHHHHccCCchHHHHHHHHHHhcc-cceehcccccccccCChhhhhHHHHHhc-cccccHHH-HHHHHHHHHHH
Confidence            666665554  2222  3777888888887 4557888889999999999999999988 88888875 56666655554


Q ss_pred             hhhhhhhhhhhccCCCCCcccCCCCCCcccCCcchHHHHHHHHHHHHHHHHHHHHHh
Q 017754          291 YAEKQAGLLWKYNGNMLPVSFRDQETPTCLGSICYSITCGIMAGLCIIAMVMSLIVV  347 (366)
Q Consensus       291 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~g~~~~~~~f~i~~~~~~~~~~~~~~~~  347 (366)
                      .+..                             .|+.+..+.....++++++.++..
T Consensus       166 ~g~~-----------------------------~w~~~~~i~~~~l~v~~v~~~~~~  193 (417)
T COG2223         166 FGFL-----------------------------AWRNVAGIYVVALAIAAVLAWLGM  193 (417)
T ss_pred             HhhH-----------------------------HHHHHHHHHHHHHHHHHHHHHHHh
Confidence            4410                             178888777777777666666554

>TIGR00883 2A0106 metabolite-proton symporter

Probab=99.00  E-value=1.6e-08  Score=97.64  Aligned_cols=103  Identities=18%  Similarity=0.226  Sum_probs=81.9

Q ss_pred             HHHhhhhhhhhhhhhhhhhhccCchhHHHHHHHHHHHHHHHHHHhh-hh--------HHHHHHHHHHHHHHhhhhhhHHH
Q 017754          180 IWNFLGRVGGGYFSEAIVRKFAYPRPVAMAVAQVVMAFALLYYAIG-WP--------GEIYVTTVLVGLSYGAHWAIVPA  250 (366)
Q Consensus       180 i~~~~g~~~~G~lsD~~grr~~~~R~~~~~~~~~~~~~~~~l~~~~-~~--------~~l~~~~~l~G~~~g~~~~~~~~  250 (366)
                      +...++.++.|+++||+|||+.+      .++.++.+++.++.... +.        ..+++.+++.|++.+..++....
T Consensus        46 ~~~~i~~~~~G~l~dr~g~r~~l------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~G~~~~~~~~~~~~  119 (394)
T TIGR00883        46 LARPLGAIVFGHFGDRIGRKKTL------VITLLMMGIGTLLIGLLPSYATIGIWAPILLLLARLIQGFSLGGEWGGAAL  119 (394)
T ss_pred             HHhhhHHHHhhhhhhhhhhHHHH------HHHHHHHHHHHHHHhhCCChhhhHHHHHHHHHHHHHHHHhhccccccccHH
Confidence            34456889999999999998765      66667777766665532 21        13667788999999988888899


Q ss_pred             HHHHhhCCCchhhHHHHHHhhhhhhHHhhhhHHHHHHHh
Q 017754          251 AASELFGLKSFGALYNFLTLASPAGSLIFSGVIASGIYD  289 (366)
Q Consensus       251 ~~se~f~~~~~g~~~g~~~~~~~~G~~i~gp~l~G~l~d  289 (366)
                      +++|.++.++|+...++...+..+|..+ ++.+.+.+..
T Consensus       120 ~~~~~~~~~~r~~~~~~~~~~~~~G~~i-~~~~~~~~~~  157 (394)
T TIGR00883       120 YLAEYAPPGKRGFYGSFQQVGAPVGLLL-AALTVLLLSY  157 (394)
T ss_pred             HhhhcCCcccchHHHHHHHHHHHHHHHH-HHHHHHHHHH
Confidence            9999999999999999999999999996 8887776654

This model represents the metabolite:H+ symport subfamily of the major facilitator superfamily (pfam00083), including citrate-H+ symporters, dicarboxylate:H+ symporters, the proline/glycine-betaine transporter ProP, etc.

>PRK11043 putative transporter; Provisional

Probab=98.99  E-value=3.5e-08  Score=96.73  Aligned_cols=159  Identities=15%  Similarity=0.111  Sum_probs=104.9

Q ss_pred             CHHHHhhhhhHHHHHHHHHHhhhhHHHHHhcHHHHHHHhCCChhHH--HHHHHHHHHhhhhhhhhhhhhhhhhhccCchh
Q 017754          128 TLPQALMKADFLLLFFSLVLASGSGLTVIDNLGQICQSLGYADTSI--YVSMISIWNFLGRVGGGYFSEAIVRKFAYPRP  205 (366)
Q Consensus       128 ~~~~~l~~~~~~ll~~~~~~~~~~~~~~~~~l~~i~~~~g~s~~~~--~vsl~~i~~~~g~~~~G~lsD~~grr~~~~R~  205 (366)
                      ++++.++++++|...+.+.+.......+..+.|.+.++.|++....  ......++..+|++..+++.||+++|+..   
T Consensus       195 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~g~s~~~~g~~~~~~~~~~~~g~~~~~~l~~r~~~~~~~---  271 (401)
T PRK11043        195 TFKQLLKSKTYLGNVLIFAACSAAFFAWLTGSPFILEQMGYSPADIGLSYVPQTIAFLVGGYGCRAALQKWGGEQLL---  271 (401)
T ss_pred             HHHHHHcChhHHHHHHHHHHHHHHHHHHHHHhHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHH---
Confidence            4667788888887665555555555566677888888889987655  34445667778888899999999876543   


Q ss_pred             HHHHHHHHHHHHHHHHHHh---hhhHHHHHHHHHHHHHHhhhhhhHHHHHHHhhCCCchhhHHHHHHhhhhhhHHhhhhH
Q 017754          206 VAMAVAQVVMAFALLYYAI---GWPGEIYVTTVLVGLSYGAHWAIVPAAASELFGLKSFGALYNFLTLASPAGSLIFSGV  282 (366)
Q Consensus       206 ~~~~~~~~~~~~~~~l~~~---~~~~~l~~~~~l~G~~~g~~~~~~~~~~se~f~~~~~g~~~g~~~~~~~~G~~i~gp~  282 (366)
                      ....+...+..+..+++..   .+...+.+...+.|++.+..++...+...+.++ +++|++.|+.+.....++.+ ++.
T Consensus       272 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~g~~~g~~~~~~~~~~~~-~~~  349 (401)
T PRK11043        272 PWLLVLFAVSVIAIWLASLLSHPSLVPLLIPFCVMAAANGAIYPIVVAQALRPFP-QATGKAAALQNTLQLGLCFL-ASL  349 (401)
T ss_pred             HHHHHHHHHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHHHHHHHHHHHhhhCc-ccChHHHHHHHHHHHHHHHH-HHH
Confidence            1112222222222222221   122334445566777777777777766667765 67999999999887777775 788


Q ss_pred             HHHHHHhhh
Q 017754          283 IASGIYDYY  291 (366)
Q Consensus       283 l~G~l~d~~  291 (366)
                      +.|.+.|..
T Consensus       350 ~~g~l~~~~  358 (401)
T PRK11043        350 LVSALISTP  358 (401)
T ss_pred             HHHHccCCC
Confidence            888887743

>KOG0253 consensus Synaptic vesicle transporter SV2 (major facilitator superfamily) [General function prediction only]

Probab=98.98  E-value=1.4e-09  Score=103.24  Aligned_cols=137  Identities=15%  Similarity=0.100  Sum_probs=100.9

Q ss_pred             HHHHHHHHhhhhhhhhhhhhhhhhhccCchhHHHHHHHHHHHHHHHHHHh-hhhHHHHHHHHHHHHHHhhhhhhHHHHHH
Q 017754          175 VSMISIWNFLGRVGGGYFSEAIVRKFAYPRPVAMAVAQVVMAFALLYYAI-GWPGEIYVTTVLVGLSYGAHWAIVPAAAS  253 (366)
Q Consensus       175 vsl~~i~~~~g~~~~G~lsD~~grr~~~~R~~~~~~~~~~~~~~~~l~~~-~~~~~l~~~~~l~G~~~g~~~~~~~~~~s  253 (366)
                      +-+.++..+-|-++.+++.||+|||+.+      +..+++.++..+++.. ..+....+..+..-++..+.+...+.+.+
T Consensus       387 llitslaefPGlLIt~~iverlGRKkTM------al~l~~f~iflfll~~c~~rn~~tvllf~arafisg~fqvaYvYtP  460 (528)
T KOG0253|consen  387 LLITSLAEFPGLLITGVIVERLGRKKTM------ALSLILFGIFLFLLTTCKTRNAYTVLLFTARAFISGAFQVAYVYTP  460 (528)
T ss_pred             HHHHHHhhCCchhHHHHHHHHhcchhHH------HHHHHHHHHHHHHHHHhcCcchhHHHHHHHHHHHhchheEEEEecC
Confidence            4455678889999999999999999887      7777777777666553 23333333333444555666778888999


Q ss_pred             HhhCCCchhhHHHHHHhhhhhhHHhhhhHHHHHHHhhhhhhhhhhhhhccCCCCCcccCCCCCCcccCCcchHHHHHHHH
Q 017754          254 ELFGLKSFGALYNFLTLASPAGSLIFSGVIASGIYDYYAEKQAGLLWKYNGNMLPVSFRDQETPTCLGSICYSITCGIMA  333 (366)
Q Consensus       254 e~f~~~~~g~~~g~~~~~~~~G~~i~gp~l~G~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~g~~~~~~~f~i~~  333 (366)
                      |+||++.|+++.|.......+|+++ .|.++ ...+..-                                +- ...+.+
T Consensus       461 EVyPTavRatgvGtcSsmaRIggI~-~p~iA-~~~e~s~--------------------------------sl-~i~vy~  505 (528)
T KOG0253|consen  461 EVYPTAVRATGVGTCSSMARIGGIF-SPVIA-MRAELST--------------------------------SL-PIFVYG  505 (528)
T ss_pred             cccchhhhhcchhhhhhHHhhhhhh-hhHHH-HHhccce--------------------------------ee-hHHHHH
Confidence            9999999999999999999999996 89888 2222211                                33 334667


Q ss_pred             HHHHHHHHHHHHHhhhchH
Q 017754          334 GLCIIAMVMSLIVVHRTKS  352 (366)
Q Consensus       334 ~~~~~~~~~~~~~~~~~r~  352 (366)
                      ++++++.+++.++..++|.
T Consensus       506 ~~~ilagIavcffPiEtkG  524 (528)
T KOG0253|consen  506 ALFILAGIAVCFFPIETKG  524 (528)
T ss_pred             HHHHHHHHHheeeeeccCC
Confidence            7888888888888777764

>PF13347 MFS_2: MFS/sugar transport protein

Probab=98.97  E-value=2.9e-08  Score=98.53  Aligned_cols=159  Identities=17%  Similarity=0.231  Sum_probs=124.3

Q ss_pred             CCHHHHhhhhhHHHHHHHHHHhhhhHHHHHhcHHHHHHH-hCCChhHH-HHHHHHHHHhhhhhhhhhhhhhhhhhccCch
Q 017754          127 FTLPQALMKADFLLLFFSLVLASGSGLTVIDNLGQICQS-LGYADTSI-YVSMISIWNFLGRVGGGYFSEAIVRKFAYPR  204 (366)
Q Consensus       127 ~~~~~~l~~~~~~ll~~~~~~~~~~~~~~~~~l~~i~~~-~g~s~~~~-~vsl~~i~~~~g~~~~G~lsD~~grr~~~~R  204 (366)
                      ..+++.++++.++.+++..++............+++.++ +|.+.... +..+..+...++.+++++++||+|+|+.+  
T Consensus       216 ~~~~~~~~nr~~~~l~~~~~~~~~~~~~~~~~~~y~~~~vl~~~~~~~~~~~~~~~~~~v~~~~~~~l~~r~gk~~~~--  293 (428)
T PF13347_consen  216 DSLRSLFRNRPFRILLLAFFLQWLAFALMNTFLPYYFTYVLGNEGLISIFMLIFFVASIVGSPLWGRLSKRFGKKKVY--  293 (428)
T ss_pred             cchhhhcccchHHHHHHHHHHHHhhhhhhhhHHHHHHHHHhcCchhhHHHHHHHHHHHHHHHHHHHHHHHHccceeeh--
Confidence            346778889998888888777766666556666777766 45553333 66778888999999999999999998877  


Q ss_pred             hHHHHHHHHHHHHHHHHHH-h--hhhHHHHHHHHHHHHHHhhhhhhHHHHHHHhhC-------CCchhhHHHHHHhhhhh
Q 017754          205 PVAMAVAQVVMAFALLYYA-I--GWPGEIYVTTVLVGLSYGAHWAIVPAAASELFG-------LKSFGALYNFLTLASPA  274 (366)
Q Consensus       205 ~~~~~~~~~~~~~~~~l~~-~--~~~~~l~~~~~l~G~~~g~~~~~~~~~~se~f~-------~~~~g~~~g~~~~~~~~  274 (366)
                          ..+.++.+++.+++. .  .+...+++..++.|++.+..+...+++.+|..+       .+.-|..+++.+....+
T Consensus       294 ----~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~gi~~~~~~~~~~a~~ad~id~~e~~tg~r~~g~~~s~~~~~~k~  369 (428)
T PF13347_consen  294 ----IIGLLLAALGFLLLFFLGPGSPWLVLILFILAGIGYGAFFVIPWAMLADVIDYDEWKTGRRREGMYFSVNSFFIKI  369 (428)
T ss_pred             ----hhhHHHHHHHHHHHHHHHhhhHHHHHHHHHHhHhhhcccccccccccccchhhHHHhcCCCchHHHHHhhhhhhHH
Confidence                666666666665544 2  356678888889999999999999999988875       34579999999999999


Q ss_pred             hHHhhhhHHHHHHHhhhh
Q 017754          275 GSLIFSGVIASGIYDYYA  292 (366)
Q Consensus       275 G~~i~gp~l~G~l~d~~~  292 (366)
                      |..+ ++.+.|.+.+..|
T Consensus       370 ~~~l-a~~i~g~~l~~~G  386 (428)
T PF13347_consen  370 GQGL-AGAIVGLLLALVG  386 (428)
T ss_pred             HHHH-HHHHHHHHHHHhC
Confidence            9996 8999999887765

>PF07690 MFS_1: Major Facilitator Superfamily; InterPro: IPR011701 Among the different families of transporter, only two occur ubiquitously in all classifications of organisms

Probab=98.97  E-value=5.6e-09  Score=99.41  Aligned_cols=149  Identities=16%  Similarity=0.233  Sum_probs=107.7

Q ss_pred             HHHHhhhhhHHHHHHHHHHhhhhHHHHHhcHHHH-HHHhCCC-hhHH--HHHHHHHHHhhhhhhhhhhhhhhhhhccCch
Q 017754          129 LPQALMKADFLLLFFSLVLASGSGLTVIDNLGQI-CQSLGYA-DTSI--YVSMISIWNFLGRVGGGYFSEAIVRKFAYPR  204 (366)
Q Consensus       129 ~~~~l~~~~~~ll~~~~~~~~~~~~~~~~~l~~i-~~~~g~s-~~~~--~vsl~~i~~~~g~~~~G~lsD~~grr~~~~R  204 (366)
                      ++..++++.+|.++...++..........++|.+ .+.+|++ ....  ..++..+...+++++.|+++||+++++..  
T Consensus       199 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~--  276 (352)
T PF07690_consen  199 FKSLFKNPVLWILLIAFFLFFFVFSGFSFFLPLYLQEVLGFSGPSQAGLLFSIFGIVGIIGSLLAGRLSDRFGRRRRL--  276 (352)
T ss_dssp             CTHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHCCTHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHH--
T ss_pred             cccccccchhhhhhhhhhHHHHHHHHhhcccchhhhhccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcHHHH--
Confidence            5566777777855555555555555677888887 5778888 4444  68888888899999999999999875433  


Q ss_pred             hHHHHHHHHHHHHHHHHHHhh-hhHHHHHHHHHHHHHHhhhhhhHHHHHHHhhCCCchhhHHHHHHhhhhhhHHhhhh
Q 017754          205 PVAMAVAQVVMAFALLYYAIG-WPGEIYVTTVLVGLSYGAHWAIVPAAASELFGLKSFGALYNFLTLASPAGSLIFSG  281 (366)
Q Consensus       205 ~~~~~~~~~~~~~~~~l~~~~-~~~~l~~~~~l~G~~~g~~~~~~~~~~se~f~~~~~g~~~g~~~~~~~~G~~i~gp  281 (366)
                       ........+..++..+.... +....++..++.|++.+..++.....+.+.+|++++|+++|+.+....+|+.+ ||
T Consensus       277 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~~~~i-gP  352 (352)
T PF07690_consen  277 -LIAILLLILGALGLLLLPFSSSPVWLIIALFLIGFGFGIVFPILFSLIQELVPPEYRGTAFGLFNSIGSLGGII-GP  352 (352)
T ss_dssp             -HHHHHHHHHHHHHHCCSHHHCHHHHHHHHHHHHHHHHHHHCHHHHHHHHCCCHTCHHHHHHHHHHHHHHHHHHH-HH
T ss_pred             -HHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHH-CC
Confidence             12222222222222222222 34455667788899999989999999999999999999999999999999996 76

These are the ATP-Binding Cassette (ABC) superfamily and the Major Facilitator Superfamily (MFS). The MFS transporters are single-polypeptide secondary carriers capable only of transporting small solutes in response to chemiosmotic ion gradients [, ].; GO: 0055085 transmembrane transport, 0016021 integral to membrane; PDB: 2GFP_B 3O7P_A 3O7Q_A 1PW4_A.

>KOG0254 consensus Predicted transporter (major facilitator superfamily) [General function prediction only]

Probab=98.96  E-value=1.5e-08  Score=103.22  Aligned_cols=137  Identities=18%  Similarity=0.206  Sum_probs=111.2

Q ss_pred             HHHHHHHHHHhhhhhhhhhhhhhhhhhccCchhHHHHHHHHHHHHHHHHHH-hhhhHHHHHHHHHHHHHHhhhhhhHHHH
Q 017754          173 IYVSMISIWNFLGRVGGGYFSEAIVRKFAYPRPVAMAVAQVVMAFALLYYA-IGWPGEIYVTTVLVGLSYGAHWAIVPAA  251 (366)
Q Consensus       173 ~~vsl~~i~~~~g~~~~G~lsD~~grr~~~~R~~~~~~~~~~~~~~~~l~~-~~~~~~l~~~~~l~G~~~g~~~~~~~~~  251 (366)
                      .+.+...++..+|.+..|+++|++|||+.+      .++.++..++.++.+ ..+...+++++++.|+|.|....+.|.+
T Consensus        93 ~~~s~~~lga~~g~l~~g~l~d~~GRk~~l------~~~~~~~~iG~ii~~~a~~~~~l~~GR~l~G~g~G~~~~~~piy  166 (513)
T KOG0254|consen   93 LLTSILNLGALVGSLLAGRLGDRIGRKKTL------LLAVVLFLIGAIIIALAPSWYQLIVGRILTGLGVGGASVLAPVY  166 (513)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhhhHHHH------HHHHHHHHHHHHHHHHhhhHHHHHHHHHHhccchhhhhhcchhh
Confidence            489999999999999999999999999877      788888888888877 4466789999999999999999999999


Q ss_pred             HHHhhCCCchhhHHHHHHhhhhhhHHhhhhHHHHHHHhhhhhhhhhhhhhccCCCCCcccCCCCCCcccCCcchHHHHHH
Q 017754          252 ASELFGLKSFGALYNFLTLASPAGSLIFSGVIASGIYDYYAEKQAGLLWKYNGNMLPVSFRDQETPTCLGSICYSITCGI  331 (366)
Q Consensus       252 ~se~f~~~~~g~~~g~~~~~~~~G~~i~gp~l~G~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~g~~~~~~~f~i  331 (366)
                      ++|+-|.+.||...+.......+|..+ + .+.|+..+...                              ..||..+.+
T Consensus       167 ~sEiap~~~RG~l~~~~~l~~~~Gi~~-~-~~~~~~~~~~~------------------------------~~Wr~~~~~  214 (513)
T KOG0254|consen  167 ISEIAPAHIRGTLVSLYQLFITIGILL-G-YCINYGTSKVY------------------------------AGWRIPLGL  214 (513)
T ss_pred             HhhcCChhhhHHHHHHHHHHHHHHHHH-H-HHHhhhhccCC------------------------------ccHHHHHHH
Confidence            999999999999999999998877774 5 55555544330                              129988887


Q ss_pred             HHHHHHHHHHHHHHHhh
Q 017754          332 MAGLCIIAMVMSLIVVH  348 (366)
Q Consensus       332 ~~~~~~~~~~~~~~~~~  348 (366)
                      ..+.+++-.+. +.+.+
T Consensus       215 ~~i~~~~~~~~-~~~~p  230 (513)
T KOG0254|consen  215 ALIPAVILALG-MLFLP  230 (513)
T ss_pred             HHHHHHHHHHH-HHhCC
Confidence            77777666655 44443

>PRK14995 methyl viologen resistance protein SmvA; Provisional

Probab=98.93  E-value=2.8e-08  Score=100.66  Aligned_cols=155  Identities=11%  Similarity=-0.032  Sum_probs=118.5

Q ss_pred             HHHhhhhhHHHHHHHHHHhhhhHHHHHhcHHHHHHH-hCCChhHH--HHHHHHHHHhhhhhhhhhhhhhhhhhccCchhH
Q 017754          130 PQALMKADFLLLFFSLVLASGSGLTVIDNLGQICQS-LGYADTSI--YVSMISIWNFLGRVGGGYFSEAIVRKFAYPRPV  206 (366)
Q Consensus       130 ~~~l~~~~~~ll~~~~~~~~~~~~~~~~~l~~i~~~-~g~s~~~~--~vsl~~i~~~~g~~~~G~lsD~~grr~~~~R~~  206 (366)
                      .+.++++.++...+..++..........++|++.+. +|++..++  ......++..++.++.|+++||+++|+..    
T Consensus       253 ~~lf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lq~v~g~s~~~ag~~~~~~~~~~~~~~~~~g~l~~r~g~~~~~----  328 (495)
T PRK14995        253 MRLFTHRIILSGVVMAMTAMITLVGFELLMAQELQFVHGLSPLEAGMFMLPVMVASGFSGPIAGILVSRLGLRLVA----  328 (495)
T ss_pred             HHHhCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCchHHH----
Confidence            467888888877766666666666666778887765 68987766  66777888899999999999999876543    


Q ss_pred             HHHHHHHHHHHHHHHHHh----hhhHHHHHHHHHHHHHHhhhhhhHHHHHHHhhCCCchhhHHHHHHhhhhhhHHhhhhH
Q 017754          207 AMAVAQVVMAFALLYYAI----GWPGEIYVTTVLVGLSYGAHWAIVPAAASELFGLKSFGALYNFLTLASPAGSLIFSGV  282 (366)
Q Consensus       207 ~~~~~~~~~~~~~~l~~~----~~~~~l~~~~~l~G~~~g~~~~~~~~~~se~f~~~~~g~~~g~~~~~~~~G~~i~gp~  282 (366)
                        ..+.++++++.+++..    .+....+...++.|++.|...+.....+.+..|.+++|.+.++.++...+|+.+ |+.
T Consensus       329 --~~g~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~G~g~g~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~lG~~~-G~a  405 (495)
T PRK14995        329 --TGGMALSALSFYGLAMTDFSTQQWQAWGLMALLGFSAASALLASTSAIMAAAPPEKAAAAGAIETMAYELGAGL-GIA  405 (495)
T ss_pred             --HHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHhHHHHHHHHHHHHHhcCCHHhcchHHHHHHHHHHHHHHH-HHH
Confidence              5555555655544431    123345566778899988887777777888899999999999999999999996 999


Q ss_pred             HHHHHHhhh
Q 017754          283 IASGIYDYY  291 (366)
Q Consensus       283 l~G~l~d~~  291 (366)
                      +.|.+++..
T Consensus       406 i~g~i~~~~  414 (495)
T PRK14995        406 IFGLLLSRS  414 (495)
T ss_pred             HHHHHHHHH
Confidence            999998764

>PRK10473 multidrug efflux system protein MdtL; Provisional

Probab=98.93  E-value=6.2e-08  Score=94.68  Aligned_cols=151  Identities=10%  Similarity=0.056  Sum_probs=87.6

Q ss_pred             HHHHhhhhhHHHHHHHHHHhhhhHHHHHhcHHHHH-HHhCCChhHH--HHHHHHHHHhhhhhhhhhhhhhhhhhccCchh
Q 017754          129 LPQALMKADFLLLFFSLVLASGSGLTVIDNLGQIC-QSLGYADTSI--YVSMISIWNFLGRVGGGYFSEAIVRKFAYPRP  205 (366)
Q Consensus       129 ~~~~l~~~~~~ll~~~~~~~~~~~~~~~~~l~~i~-~~~g~s~~~~--~vsl~~i~~~~g~~~~G~lsD~~grr~~~~R~  205 (366)
                      .++.++++.+|...+...+.......+..+.|.+. +++|++....  ..+...++..+++++.|+++||++||+..   
T Consensus       196 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~i~~~~~~~~l~~r~g~~~~~---  272 (392)
T PRK10473        196 NSESLLNRFFLSRLVITTLSVTVILTFVNTSPVLLMEQMGFSRGEYAIIMALTAGVSMTVSFSTPFALGIFKPRTLM---  272 (392)
T ss_pred             HHHHHhCHHHHHHHHHHHHHHHHHHHHHHhCHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHH---
Confidence            44667888877655554444444444555566655 4578887654  66778888999999999999999987654   


Q ss_pred             HHHHHHHHHHHHHHHHHHh-hhhHHHHHHHHHHHHHHhhhhhhHHHHHHHhhCCCch-hhHHHHHHhhhhhhHHhhhhHH
Q 017754          206 VAMAVAQVVMAFALLYYAI-GWPGEIYVTTVLVGLSYGAHWAIVPAAASELFGLKSF-GALYNFLTLASPAGSLIFSGVI  283 (366)
Q Consensus       206 ~~~~~~~~~~~~~~~l~~~-~~~~~l~~~~~l~G~~~g~~~~~~~~~~se~f~~~~~-g~~~g~~~~~~~~G~~i~gp~l  283 (366)
                         .++.++..++.+++.. ......+....+.+.|.+..++.  ....++.+.+.+ |.+.++    ..++..+ |+.+
T Consensus       273 ---~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~--~~~~~~~~~~~~~g~~~~~----~~~~~~~-g~~~  342 (392)
T PRK10473        273 ---LTSQVLFLAAGITLALSPSHAVSLFGITLICAGFSVGFGV--AMSQALGPFSLRAGVASST----LGIAQVC-GSSL  342 (392)
T ss_pred             ---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHH--HHHHHhccCcccccHHHHH----HHHHHHH-HHHH
Confidence               4455555555444432 22233334444444444443332  233344444333 444443    3445553 6666


Q ss_pred             HHHHHhhhh
Q 017754          284 ASGIYDYYA  292 (366)
Q Consensus       284 ~G~l~d~~~  292 (366)
                      ++++.+..+
T Consensus       343 ~~~l~~~~g  351 (392)
T PRK10473        343 WIWLAAVLG  351 (392)
T ss_pred             HHHHHHHhc
Confidence            777777665

>KOG2615 consensus Permease of the major facilitator superfamily [General function prediction only]

Probab=98.93  E-value=4.2e-09  Score=100.40  Aligned_cols=108  Identities=19%  Similarity=0.170  Sum_probs=92.2

Q ss_pred             HHHHHHHHHhhhhhhhhhhhhhhhhhccCchhHHHHHHHHHHHHHHHHHHhhhhH-HHHHHHHHHHHHHhhhhhhHHHHH
Q 017754          174 YVSMISIWNFLGRVGGGYFSEAIVRKFAYPRPVAMAVAQVVMAFALLYYAIGWPG-EIYVTTVLVGLSYGAHWAIVPAAA  252 (366)
Q Consensus       174 ~vsl~~i~~~~g~~~~G~lsD~~grr~~~~R~~~~~~~~~~~~~~~~l~~~~~~~-~l~~~~~l~G~~~g~~~~~~~~~~  252 (366)
                      .-|.+++..++..+.+|.+||++|||..+      .++.+..++.+.+++..... .+.+.+++.|+.-|- ..+.-+++
T Consensus        73 lGSsF~ilQ~~sS~~~G~~SD~yGRkpvl------l~c~~~va~s~ll~~~S~~F~afv~aR~l~Gi~kgn-l~v~rAii  145 (451)
T KOG2615|consen   73 LGSSFSILQFISSPLWGCLSDRYGRKPVL------LACLIGVALSYLLWALSRNFAAFVLARFLGGIFKGN-LSVIRAII  145 (451)
T ss_pred             HhhHHHHHHHHhhhhhhhhhhhhCchHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCc-hHHHHHHH
Confidence            78899999999999999999999998766      66666667777777654433 455569999988776 56788899


Q ss_pred             HHhhCCCchhhHHHHHHhhhhhhHHhhhhHHHHHHHh
Q 017754          253 SELFGLKSFGALYNFLTLASPAGSLIFSGVIASGIYD  289 (366)
Q Consensus       253 se~f~~~~~g~~~g~~~~~~~~G~~i~gp~l~G~l~d  289 (366)
                      +|++++|+++.+++.++.+..+|-.+ ||.++|++..
T Consensus       146 sdV~sek~r~l~ms~v~~a~~lGfil-GPmIGgyla~  181 (451)
T KOG2615|consen  146 SDVVSEKYRPLGMSLVGTAFGLGFIL-GPMIGGYLAQ  181 (451)
T ss_pred             HhhcChhhccceeeeeehhhhcchhh-cchhhhHHHh
Confidence            99999999999999999999999996 9999999987

>TIGR00886 2A0108 nitrite extrusion protein (nitrite facilitator)

Probab=98.91  E-value=2.6e-08  Score=95.86  Aligned_cols=141  Identities=16%  Similarity=0.145  Sum_probs=96.1

Q ss_pred             HHHHhhhhhHHHHHHHHHHhhhhHHHHHhcHHHHHHH-hCCChhHH--HHHHHHHHHhhhhhhhhhhhhhhhhhccCchh
Q 017754          129 LPQALMKADFLLLFFSLVLASGSGLTVIDNLGQICQS-LGYADTSI--YVSMISIWNFLGRVGGGYFSEAIVRKFAYPRP  205 (366)
Q Consensus       129 ~~~~l~~~~~~ll~~~~~~~~~~~~~~~~~l~~i~~~-~g~s~~~~--~vsl~~i~~~~g~~~~G~lsD~~grr~~~~R~  205 (366)
                      ..+.++++++|.+.+..++.......+..++|++.++ +|++..+.  +.++..+.+.++++++|+++||+++|+..   
T Consensus       218 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~~r~g~~~~~---  294 (366)
T TIGR00886       218 QLKVFRDRHTWILALLYSVTFGSFLGVSSIFAMFFKDQFGLSKVTAGAYASLGGLLGSLARPLGGAISDRLGGARKL---  294 (366)
T ss_pred             HHHHHhccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHHHhhccchHHHhhccchhH---
Confidence            4456777888888777777666666777888888865 68877655  67778888999999999999999987544   


Q ss_pred             HHHHHHHHHHHHHHHHH--Hhh---hhHHHHHHHHHHHHHHhhhhhhHHHHHHHhhCCCchhhHHHHHHhhhhhhH
Q 017754          206 VAMAVAQVVMAFALLYY--AIG---WPGEIYVTTVLVGLSYGAHWAIVPAAASELFGLKSFGALYNFLTLASPAGS  276 (366)
Q Consensus       206 ~~~~~~~~~~~~~~~l~--~~~---~~~~l~~~~~l~G~~~g~~~~~~~~~~se~f~~~~~g~~~g~~~~~~~~G~  276 (366)
                         ..+..+.+.+..++  ...   +....++...+.+++.|...+..++.++++++ +++|+.+|+.+....+|+
T Consensus       295 ---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~-~~~g~~~g~~~~~~~~g~  366 (366)
T TIGR00886       295 ---LMSFLGVAMGAFLVVLGLVSPLSLAVFIVLFVALFFFSGAGNGSTFALVPHIFR-RATGAVSGLVGAIGNLGG  366 (366)
T ss_pred             ---HHHHHHHHHHHHHHHhcCCCcchHHHHHHHHHHHHHHhccccchhhhcchhhch-hhcccHHHHHHHhccCCC
Confidence               22233333333222  222   22333344444455556656667777888886 799999999988877663

>TIGR01301 GPH_sucrose GPH family sucrose/H+ symporter

Probab=98.89  E-value=1.3e-07  Score=95.13  Aligned_cols=175  Identities=14%  Similarity=0.088  Sum_probs=113.5

Q ss_pred             hHHHHHhcHHHHHHHhCCChhHH--HHHHHHHHHhhhhhhhhhhhhh----hhhhccCchhHHHHHHHHHHHHHHHHHHh
Q 017754          151 SGLTVIDNLGQICQSLGYADTSI--YVSMISIWNFLGRVGGGYFSEA----IVRKFAYPRPVAMAVAQVVMAFALLYYAI  224 (366)
Q Consensus       151 ~~~~~~~~l~~i~~~~g~s~~~~--~vsl~~i~~~~g~~~~G~lsD~----~grr~~~~R~~~~~~~~~~~~~~~~l~~~  224 (366)
                      .......+++.+.+++|.+....  ......+...+..|+.|++|||    +|||+.+     +..+.+..+++++++..
T Consensus        19 ~~~l~~~~l~~yl~~lg~~~~~~~~i~~~~~l~~~i~~Pi~G~lSDr~~sr~GRRrp~-----il~g~~~~~~~l~ll~~   93 (477)
T TIGR01301        19 GWALQLSLLTPYVQELGIPHAWASIIWLCGPLSGLLVQPLVGYLSDRCTSRFGRRRPF-----IAAGAALVAFAVILIGF   93 (477)
T ss_pred             HHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHhHeeehhcCCCCCCCChHHH-----HHHHHHHHHHHHHHHHh
Confidence            33345566777889999987665  6777788899999999999995    7775443     33344444555445442


Q ss_pred             h-hh-----------------HHHHHHHHHHHHHHhhhhhhHHHHHHHhhCCCch--hhHHHHHHhhhhhhHHhhhhHHH
Q 017754          225 G-WP-----------------GEIYVTTVLVGLSYGAHWAIVPAAASELFGLKSF--GALYNFLTLASPAGSLIFSGVIA  284 (366)
Q Consensus       225 ~-~~-----------------~~l~~~~~l~G~~~g~~~~~~~~~~se~f~~~~~--g~~~g~~~~~~~~G~~i~gp~l~  284 (366)
                      . +.                 ....++..+..++.....+..-++++|+++.+++  +.++++.+....+|+.+ |+.++
T Consensus        94 ~~~~~~~~~~~~~~~~~~~~i~~~~i~~~lld~~~n~~~~p~rALiaDl~p~~~~~~~~a~~~~~~~~~lG~il-g~~~g  172 (477)
T TIGR01301        94 AADIGHLFGDNLDKKTKPRAIIVFVVGFWILDVANNMLQGPCRAFLADLTGGDARRTRIANAYFSFFMAIGNVL-GYAAG  172 (477)
T ss_pred             CchhhhhccccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccCchhHHHHHHHHHHHHHHHHHHHH-HHHHH
Confidence            1 11                 1112222233446666667777899999998864  67899999999999996 88877


Q ss_pred             HHH--HhhhhhhhhhhhhhccCCCCCcccCCCCCCcccCCcchHHHHHHHHHHHHHHHHHHHHHhhhc
Q 017754          285 SGI--YDYYAEKQAGLLWKYNGNMLPVSFRDQETPTCLGSICYSITCGIMAGLCIIAMVMSLIVVHRT  350 (366)
Q Consensus       285 G~l--~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~g~~~~~~~f~i~~~~~~~~~~~~~~~~~~~  350 (366)
                      |+.  .+..+-                   ...+..+.-+.+++..|++.+++.+++.++.++..++.
T Consensus       173 ~~~~~~~~~~~-------------------~~~~~~~~~~~~~~~~F~i~a~~l~i~~l~t~~~v~E~  221 (477)
T TIGR01301       173 AYSGLYKIFPF-------------------TKTEACGVSCANLKSCFLIDIILLAILTYIALSAVKEN  221 (477)
T ss_pred             HHHhHHHhccc-------------------ccccccccccchHHHHHHHHHHHHHHHHHHHeeeeecc
Confidence            764  222110                   00011122233589999998888888777777665553

This model represents sucrose/proton symporters, found in plants, from the Glycoside-Pentoside-Hexuronide (GPH)/cation symporter family. These proteins are predicted to have 12 transmembrane domains. Members may export sucrose (e.g. SUT1, SUT4) from green parts to the phloem for long-distance transport or import sucrose (e.g SUT2) to sucrose sinks such as the tap root of the carrot.

>KOG2532 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism]

Probab=98.88  E-value=5.3e-09  Score=104.82  Aligned_cols=144  Identities=14%  Similarity=0.209  Sum_probs=120.2

Q ss_pred             hCCChhHH--HHHHHHHHHhhhhhhhhhhhhhhhhhccCchhHHHHHHHHHHHHHHHHHHhh---hhHHHHHHHHHHHHH
Q 017754          166 LGYADTSI--YVSMISIWNFLGRVGGGYFSEAIVRKFAYPRPVAMAVAQVVMAFALLYYAIG---WPGEIYVTTVLVGLS  240 (366)
Q Consensus       166 ~g~s~~~~--~vsl~~i~~~~g~~~~G~lsD~~grr~~~~R~~~~~~~~~~~~~~~~l~~~~---~~~~l~~~~~l~G~~  240 (366)
                      +.++..+-  +.+.+..+..++.+.+|++.||+|-|+..      ..+.++.+++.++....   ....+.+.++++|++
T Consensus        68 ~~ws~~~k~~i~ss~~~G~i~~~iP~g~l~~k~G~r~v~------~~~~~~sa~~t~l~P~aa~~~~~~~~~~R~lqGl~  141 (466)
T KOG2532|consen   68 YDWSSTEKGLIFSSFFWGYILGQIPGGYLADKFGARRVF------FISGLISALLTLLTPLAASIGFYLLLVLRFLQGLG  141 (466)
T ss_pred             ecCCHHHHHHHHHHHHHHHHHHHcCcHHHHHHcCchHHH------HHHHHHHHHHHHHHHHHHHhcchhhHHHHHHhHHH
Confidence            44554443  88889999999999999999999988766      66777777776665421   223678899999999


Q ss_pred             HhhhhhhHHHHHHHhhCCCchhhHHHHHHhhhhhhHHhhhhHHHHHHHhh-hhhhhhhhhhhccCCCCCcccCCCCCCcc
Q 017754          241 YGAHWAIVPAAASELFGLKSFGALYNFLTLASPAGSLIFSGVIASGIYDY-YAEKQAGLLWKYNGNMLPVSFRDQETPTC  319 (366)
Q Consensus       241 ~g~~~~~~~~~~se~f~~~~~g~~~g~~~~~~~~G~~i~gp~l~G~l~d~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~c  319 (366)
                      .|..++.+..+.+.+.|+++|++..+++..+..+|..+ +-+++|++.+. .|                           
T Consensus       142 ~g~~~pa~~~i~~~W~P~~Ers~~~ail~~g~q~g~v~-~mp~sg~lc~s~~G---------------------------  193 (466)
T KOG2532|consen  142 QGVLFPAIGSILAKWAPPNERSTFIAILTAGSQLGTII-TMPVSGLLCESSLG---------------------------  193 (466)
T ss_pred             HhHHHhhhhceeeeECCHHHHHHHHHHHHHHHHHHHHH-HHHhHHHHhccCCC---------------------------
Confidence            99999999999999999999999999999999999996 77899999988 44                           


Q ss_pred             cCCcchHHHHHHHHHHHHHHHHHHHHHhh
Q 017754          320 LGSICYSITCGIMAGLCIIAMVMSLIVVH  348 (366)
Q Consensus       320 ~g~~~~~~~f~i~~~~~~~~~~~~~~~~~  348 (366)
                           |+..|++.++++++-.++.+++..
T Consensus       194 -----W~sifY~~g~~g~i~~~~w~~~~~  217 (466)
T KOG2532|consen  194 -----WPSIFYVFGIVGLIWFILWFLFYS  217 (466)
T ss_pred             -----CchHHHHHHHHHHHHHHHHHHHhc
Confidence                 999999999998887777766654

>TIGR02718 sider_RhtX_FptX siderophore transporter, RhtX/FptX family

Probab=98.88  E-value=9.4e-08  Score=93.47  Aligned_cols=169  Identities=14%  Similarity=0.051  Sum_probs=108.0

Q ss_pred             HHHHHHHhhhhHHHHHhcHHHHHHHhCCChhHH-H---HHHHHHHHhhhhhhh-hhhhhhhhhhccCchhHHHHHHHHHH
Q 017754          141 LFFSLVLASGSGLTVIDNLGQICQSLGYADTSI-Y---VSMISIWNFLGRVGG-GYFSEAIVRKFAYPRPVAMAVAQVVM  215 (366)
Q Consensus       141 l~~~~~~~~~~~~~~~~~l~~i~~~~g~s~~~~-~---vsl~~i~~~~g~~~~-G~lsD~~grr~~~~R~~~~~~~~~~~  215 (366)
                      ++..++............+|.+.++.|++..++ +   .+++.+..++..+++ ++.+||+|||+.+    . ...+++.
T Consensus         6 ~~~ly~~~g~~~~~~~p~lp~~l~~~g~~~~~iGl~~~~~l~~~~~~l~~p~~~~~~~~~~g~r~~~----i-~~~~~~~   80 (390)
T TIGR02718         6 LGLLYLSQGIPIGLAMDALPTLLREDGAPLTALAFLPLVGLPWVVKFLWAPLVDNWWSWRLGRRRSW----V-LPMQCLV   80 (390)
T ss_pred             HHHHHHHHHhHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHhccccccCCcchhH----H-HHHHHHH
Confidence            344444444444456678999999999998877 3   355566666666666 4567777765442    2 2222222


Q ss_pred             HHHHHHHH---hh-h-hHHHHHHHHHHHHHHhhhhhhHHHHHHHhhCCCchhhHHHHHHhhhhhhHHhhhhHHHHHHHhh
Q 017754          216 AFALLYYA---IG-W-PGEIYVTTVLVGLSYGAHWAIVPAAASELFGLKSFGALYNFLTLASPAGSLIFSGVIASGIYDY  290 (366)
Q Consensus       216 ~~~~~l~~---~~-~-~~~l~~~~~l~G~~~g~~~~~~~~~~se~f~~~~~g~~~g~~~~~~~~G~~i~gp~l~G~l~d~  290 (366)
                      +.....+.   .. . ...+.....+.+++...+-+..-++..|..+.++++...+....+..+|..+ |+.+.+++.+.
T Consensus        81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~d~~~d~~~~~~~~~~~~~~~~~~~~~g~~lG~~~-g~~~~~~l~~~  159 (390)
T TIGR02718        81 SACLASLALVGPDVAGAGWAVGLLACASLASATQDIATDGMAAEHFNGRTLAKGNAVQIAGVMIGFFG-GGAGTLVLFGK  159 (390)
T ss_pred             HHHHHHHHcCCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHhhhhHHHHHHHHHHHHHHHH-HHHHHHHHHHH
Confidence            21111111   11 1 1222333334445555566666667788888888888878877777888886 88888999988


Q ss_pred             hhhhhhhhhhhccCCCCCcccCCCCCCcccCCcchHHHHHHHHHHHHHHHHHHHHHh
Q 017754          291 YAEKQAGLLWKYNGNMLPVSFRDQETPTCLGSICYSITCGIMAGLCIIAMVMSLIVV  347 (366)
Q Consensus       291 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~g~~~~~~~f~i~~~~~~~~~~~~~~~~  347 (366)
                      .+                                |+..|++.+++.++..+..+++.
T Consensus       160 ~g--------------------------------w~~~f~~~a~l~~~~~~~~~~~~  184 (390)
T TIGR02718       160 FG--------------------------------QRPAFLLVACVPLASLVCVLWLK  184 (390)
T ss_pred             hC--------------------------------HHHHHHHHHHHHHHHHHHHHHcC
Confidence            87                                99999999988877666655443

RhtX from Sinorhizobium meliloti 2011 and FptX from Pseudomonas aeruginosa appear to be single polypeptide transporters, from the major facilitator family (see pfam07690) for import of siderophores as a means to import iron. This function was suggested by proximity to siderophore biosynthesis genes and then confirmed by study of knockout and heterologous expression phenotypes.

>TIGR00901 2A0125 AmpG-related permease

Probab=98.86  E-value=7.3e-08  Score=92.84  Aligned_cols=139  Identities=17%  Similarity=0.143  Sum_probs=96.4

Q ss_pred             HHHHhhhhh---HHHHHHHHHHhhhhHHHHHhcHHHHHHHhCCChhHH--HHHHHH-HHHhhhhhhhhhhhhhhhhhccC
Q 017754          129 LPQALMKAD---FLLLFFSLVLASGSGLTVIDNLGQICQSLGYADTSI--YVSMIS-IWNFLGRVGGGYFSEAIVRKFAY  202 (366)
Q Consensus       129 ~~~~l~~~~---~~ll~~~~~~~~~~~~~~~~~l~~i~~~~g~s~~~~--~vsl~~-i~~~~g~~~~G~lsD~~grr~~~  202 (366)
                      +++.++++.   +|.+.+..++..........++|.+.+++|++..+.  ..+... +...+|.+++|+++||+++|+..
T Consensus       199 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~g~~~~~~~~~~~~~g~~~~g~l~~r~g~~~~l  278 (356)
T TIGR00901       199 IREFFQRKNMIQALLLLLLIVLYKLGDSAATVLTTLFLLDMGFSKEEIALVAKINGLLGAILGGLIGGIIMQPLNILYAL  278 (356)
T ss_pred             HHHHHHhcCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHhHHHHHHHHHHHHHHHHHHHhhhhHHHHH
Confidence            344455553   666665555555555566778888888899988765  343334 56778999999999999987654


Q ss_pred             chhHHHHHHHHHHHHHHHHHHh------------hhhHHHHHHHHHHHHHHhhhhhhHHHHHHHhhCCCchhhHHHHHHh
Q 017754          203 PRPVAMAVAQVVMAFALLYYAI------------GWPGEIYVTTVLVGLSYGAHWAIVPAAASELFGLKSFGALYNFLTL  270 (366)
Q Consensus       203 ~R~~~~~~~~~~~~~~~~l~~~------------~~~~~l~~~~~l~G~~~g~~~~~~~~~~se~f~~~~~g~~~g~~~~  270 (366)
                            ..+.++.+++..++..            .+...+..+.++.+++.+..++...++..|.+|++++|+.+|+.+.
T Consensus       279 ------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~  352 (356)
T TIGR00901       279 ------LLFGIVQALTNAGFVWLASNGHHDGITFPHLLMLFLTITLEAVTGGLGTVAFVAFLSKLSNPKFGATQMALLSS  352 (356)
T ss_pred             ------HHHHHHHHHHHHHHHHHHhcCcccccccchHHHHHHHHHHHHHHhHHHHHHHHHHHHHhcCCCccHHHHHHHHH
Confidence                  3444444444333221            1123345556677888898999999999999999999999999877


Q ss_pred             hhh
Q 017754          271 ASP  273 (366)
Q Consensus       271 ~~~  273 (366)
                      ..+
T Consensus       353 ~~~  355 (356)
T TIGR00901       353 LSA  355 (356)
T ss_pred             HHh
Confidence            654

>TIGR00792 gph sugar (Glycoside-Pentoside-Hexuronide) transporter

Probab=98.85  E-value=4.6e-08  Score=96.75  Aligned_cols=166  Identities=13%  Similarity=0.165  Sum_probs=107.9

Q ss_pred             hcHHH-HHHHhCCChhHH--HHHHHHHHHhhhhhhhhhhhhhhhhhccCchhHHHHHHHHHHHHHHHHHHh-hh------
Q 017754          157 DNLGQ-ICQSLGYADTSI--YVSMISIWNFLGRVGGGYFSEAIVRKFAYPRPVAMAVAQVVMAFALLYYAI-GW------  226 (366)
Q Consensus       157 ~~l~~-i~~~~g~s~~~~--~vsl~~i~~~~g~~~~G~lsD~~grr~~~~R~~~~~~~~~~~~~~~~l~~~-~~------  226 (366)
                      .++++ +.+.+|.+...+  ..++..++..+..|+.|+++||.++|+..+|+++ ..+.+..+++.+++.. ++      
T Consensus        20 ~~l~~~~~~~~g~s~~~~g~i~~~~~i~~~i~~p~~G~lsDr~~~r~Grrr~~i-~~~~~~~~i~~~~~~~~~~~~~~~~   98 (437)
T TIGR00792        20 TYLLFFYTDVLGLSAAFVGTLFLVARILDAITDPIMGNIVDRTRTRWGKFRPWL-LIGAIPFSIVLVLLFTTPDFSATGK   98 (437)
T ss_pred             HHHHHHHHHccCCCHHHHHHHHHHHHHHHHhccchheEeeecCCCCCCCcchhH-HHhHHHHHHHHHHHHhCCCCCcchH
Confidence            33444 445689988766  7888889999999999999999876665444444 4444444544444432 21      


Q ss_pred             hHHHHHHHHHHHHHHhhhhhhHHHHHHHhhC-CCchhhHHHHHHhhhhhhHHhhhhHHHHHHHhhhhhhhhhhhhhccCC
Q 017754          227 PGEIYVTTVLVGLSYGAHWAIVPAAASELFG-LKSFGALYNFLTLASPAGSLIFSGVIASGIYDYYAEKQAGLLWKYNGN  305 (366)
Q Consensus       227 ~~~l~~~~~l~G~~~g~~~~~~~~~~se~f~-~~~~g~~~g~~~~~~~~G~~i~gp~l~G~l~d~~~~~~~~~~~~~~~~  305 (366)
                      ....++..++.+++++.......+..+|+.. .++|+...++.+....+|+.+ ++.+.+.+....+...          
T Consensus        99 ~~~~~~~~~~~~~~~~~~~~~~~al~~~~~~~~~~R~~~~~~~~~~~~~g~~l-~~~~~~~l~~~~~~~~----------  167 (437)
T TIGR00792        99 LVYAYITYILLGLFYSFVNIPYWSLVPAITLDPRERESLSTFRRFGATLGGLL-VAVIVLPLVSYFGGGD----------  167 (437)
T ss_pred             HHHHHHHHHHHHHHHHhhcccHhhCcccccCCHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHhCCCc----------
Confidence            1123344455666666655566677788874 578999999988888888885 6666666654332000          


Q ss_pred             CCCcccCCCCCCcccCCcchHHHHHHHHHHHHHHHHHHHHHhhh
Q 017754          306 MLPVSFRDQETPTCLGSICYSITCGIMAGLCIIAMVMSLIVVHR  349 (366)
Q Consensus       306 ~~~~~~~~~~~~~c~g~~~~~~~f~i~~~~~~~~~~~~~~~~~~  349 (366)
                                     ....|+..+.+.++++++..+......++
T Consensus       168 ---------------~~~g~~~~~~i~~~l~~~~~~~~~~~~~e  196 (437)
T TIGR00792       168 ---------------DKFGWFMFALVLALIGVVSLIICFFGTKE  196 (437)
T ss_pred             ---------------ccccHHHHHHHHHHHHHHHHHHHHcCCEe
Confidence                           01139999988888777766655544433

GPH:cation symporters catalyze uptake of sugars in symport with a monovalent cation (H+ or Na+). Members of this family includes transporters for melibiose, lactose, raffinose, glucuronides, pentosides and isoprimeverose. Mutants of two groups of these symporters (the melibiose permeases of enteric bacteria, and the lactose permease of Streptococcus thermophilus) have been isolated in which altered cation specificity is observed or in which sugar transport is uncoupled from cation symport (i.e., uniport is catalyzed). The various members of the family can use Na+, H+ or Li, Na+ or Li+, H+ or Li+, or only H+ as the symported cation. All of these proteins possess twelve putative transmembrane a-helical spanners.

>PRK11102 bicyclomycin/multidrug efflux system; Provisional

Probab=98.84  E-value=1.6e-07  Score=90.97  Aligned_cols=148  Identities=9%  Similarity=0.032  Sum_probs=85.6

Q ss_pred             HHHHhhhhhHHHHHHHHHHhhhhHHHHHhcHHHHH-HHhCCChhHH--HHHHHHHHHhhhhhhhhhhhhhhhhhccCchh
Q 017754          129 LPQALMKADFLLLFFSLVLASGSGLTVIDNLGQIC-QSLGYADTSI--YVSMISIWNFLGRVGGGYFSEAIVRKFAYPRP  205 (366)
Q Consensus       129 ~~~~l~~~~~~ll~~~~~~~~~~~~~~~~~l~~i~-~~~g~s~~~~--~vsl~~i~~~~g~~~~G~lsD~~grr~~~~R~  205 (366)
                      +++.++++.+|...+..++.......+..+.|.+. +.+|++..+.  ..+...++..+++++.|+++||+++|+..   
T Consensus       187 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~~r~g~~~~~---  263 (377)
T PRK11102        187 FASLFRHKRVLGYMLASGFSFAGMFSFLTAGPFVYIELNGVSPQNFGYYFALNIVFLFVMTIINSRFVRRVGALNML---  263 (377)
T ss_pred             HHHHHcChHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCHHHHH---
Confidence            34566777777666555555444455555666655 4478887665  67778888999999999999999987654   


Q ss_pred             HHHHHHHHH---HHHHHHHHHhhh--hHHHHHHHHHHHHHHhhhhhhHHHHHHHhhCCCchhhHHHHHHhhh-hhhHHhh
Q 017754          206 VAMAVAQVV---MAFALLYYAIGW--PGEIYVTTVLVGLSYGAHWAIVPAAASELFGLKSFGALYNFLTLAS-PAGSLIF  279 (366)
Q Consensus       206 ~~~~~~~~~---~~~~~~l~~~~~--~~~l~~~~~l~G~~~g~~~~~~~~~~se~f~~~~~g~~~g~~~~~~-~~G~~i~  279 (366)
                         ..+..+   +.+..+.....+  .....++..+.+.+.+.........+.|..| +.+|...++.+... .+|+.+ 
T Consensus       264 ---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~g~~~~~~~~~~~~~g~~~-  338 (377)
T PRK11102        264 ---RFGLWIQFIMGIWLVVSALLDLGFWALVVGVAAFVGCVSMISSNAMAVILDEFP-HMAGTASSLAGTLRFGIGAIV-  338 (377)
T ss_pred             ---HHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHhhHHHHHHHhcccc-ccchHHHHHHHHHHHHHHHHH-
Confidence               332222   222222221111  1222333333333344434444455667665 77888888866543 344443 


Q ss_pred             hhHHH
Q 017754          280 SGVIA  284 (366)
Q Consensus       280 gp~l~  284 (366)
                      +++++
T Consensus       339 g~~~~  343 (377)
T PRK11102        339 GALLS  343 (377)
T ss_pred             HHHHH
Confidence            55443

>COG0738 FucP Fucose permease [Carbohydrate transport and metabolism]

Probab=98.84  E-value=2.2e-07  Score=89.54  Aligned_cols=156  Identities=17%  Similarity=0.179  Sum_probs=115.6

Q ss_pred             CHHHHhhhhhHHHHHHHHHHhhhhHHHHHhcHHHHHHH-hCCChhHH--HHHHHHHHHhhhhhhhhhhhhhhhhhccCch
Q 017754          128 TLPQALMKADFLLLFFSLVLASGSGLTVIDNLGQICQS-LGYADTSI--YVSMISIWNFLGRVGGGYFSEAIVRKFAYPR  204 (366)
Q Consensus       128 ~~~~~l~~~~~~ll~~~~~~~~~~~~~~~~~l~~i~~~-~g~s~~~~--~vsl~~i~~~~g~~~~G~lsD~~grr~~~~R  204 (366)
                      ...++++++.++...++.|+..+...+.-++++.+..+ .|.+..+.  +++.+..+.++||.++-++-.|+...+..  
T Consensus       228 ~~~~l~~~~~~~~gvl~~FlYVG~Eva~gsfl~~y~~~~~g~~~~~aa~~~s~~~~~~~vGRFig~~lm~~~~~~k~L--  305 (422)
T COG0738         228 GLSSLFQNKHLRLGVLAIFLYVGAEVAIGSFLVSYLEELLGLNEQQAAYYLSFFWVGFMVGRFIGSALMSRIKPEKYL--  305 (422)
T ss_pred             hHHHHHhChHHHHHHHHHHHHHhHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCHHHHH--
Confidence            57889999999999999999999999999999999988 78777665  89999999999998877776677543322  


Q ss_pred             hHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHhhhhhhHHHHHHHhhCCCchhhHHHHHHhhhhhhHHhhhhHHH
Q 017754          205 PVAMAVAQVVMAFALLYYAIGWPGEIYVTTVLVGLSYGAHWAIVPAAASELFGLKSFGALYNFLTLASPAGSLIFSGVIA  284 (366)
Q Consensus       205 ~~~~~~~~~~~~~~~~l~~~~~~~~l~~~~~l~G~~~g~~~~~~~~~~se~f~~~~~g~~~g~~~~~~~~G~~i~gp~l~  284 (366)
                          ....++..+-++..+..+......+.++.|++.+..|+...+...+..| ++-...-+++.+ ..+|+.+ -|++.
T Consensus       306 ----af~a~~~ill~~~~~l~~g~v~~~~l~~ig~F~simfPTIfslal~~l~-~~ts~~s~~l~m-aivGGAi-iP~l~  378 (422)
T COG0738         306 ----AFYALIAILLLLAVALIGGVVALYALFLIGLFNSIMFPTIFSLALKNLG-EHTSVGSGLLVM-AIVGGAI-IPPLQ  378 (422)
T ss_pred             ----HHHHHHHHHHHHHHHHhcChHHHHHHHHHHHHhHHHHHHHHHHHHhccC-ccccccceeeee-heecchH-HHHHH
Confidence                2222222222222223333455667778899999999999999999998 544444444444 4566665 59999


Q ss_pred             HHHHhhhh
Q 017754          285 SGIYDYYA  292 (366)
Q Consensus       285 G~l~d~~~  292 (366)
                      |++.|..+
T Consensus       379 G~i~d~~g  386 (422)
T COG0738         379 GVIADMFG  386 (422)
T ss_pred             HHHHHhhh
Confidence            99999987

>PRK11462 putative transporter; Provisional

Probab=98.82  E-value=5.5e-07  Score=90.52  Aligned_cols=157  Identities=8%  Similarity=0.054  Sum_probs=94.3

Q ss_pred             HHHhhhhhHHHHHHHHHHhhhhHHHHHhcHHHHHHHh-CCChhH-HHHHHHHHHHhhhhhhhhhhhhhhhhhccCchhHH
Q 017754          130 PQALMKADFLLLFFSLVLASGSGLTVIDNLGQICQSL-GYADTS-IYVSMISIWNFLGRVGGGYFSEAIVRKFAYPRPVA  207 (366)
Q Consensus       130 ~~~l~~~~~~ll~~~~~~~~~~~~~~~~~l~~i~~~~-g~s~~~-~~vsl~~i~~~~g~~~~G~lsD~~grr~~~~R~~~  207 (366)
                      +..++|+.++.+...+++.............++.+.. |..... .+.....+.+++|.+++++++||+++|+..     
T Consensus       222 ~~~~~Nk~~~~l~~~~~~~~~~~~~~~~~~~y~~~y~~g~~~~~~~~l~~~~i~~iig~~l~~~l~~r~gkk~~~-----  296 (460)
T PRK11462        222 RDIWQNDQWRIVGLLTIFNILAVCVRGGAMMYYVTWILGTPEVFVAFLTTYCVGNLIGSALAKPLTDWKCKVTIF-----  296 (460)
T ss_pred             HHHhCChHHHHHHHHHHHHHHHHHHHHhHhhhhhhhhcCChHHHHHHHHHHHHHHHHHHHHHHHHHHHhChHHHH-----
Confidence            4456677777665554444443333333333444432 332222 256677788889999999999999887543     


Q ss_pred             HHHHHHHHHHHHHHHHhh--hhHHHHHHHHHHHHHHhhhhhhHHHHHHHhhC-------CCchhhHHHHHHhhhhhhHHh
Q 017754          208 MAVAQVVMAFALLYYAIG--WPGEIYVTTVLVGLSYGAHWAIVPAAASELFG-------LKSFGALYNFLTLASPAGSLI  278 (366)
Q Consensus       208 ~~~~~~~~~~~~~l~~~~--~~~~l~~~~~l~G~~~g~~~~~~~~~~se~f~-------~~~~g~~~g~~~~~~~~G~~i  278 (366)
                      ..........+.+++..+  +...+++..++.|++.+...++.+++++|...       .+.-|..++..+....+|..+
T Consensus       297 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~l~~~m~ad~~d~~e~~tG~r~~g~~~a~~~f~~Klg~al  376 (460)
T PRK11462        297 WWTNALLAVISLAMFFVPMQASITMFVFIFVIGVLHQLVTPIQWVMMSDTVDYGEWCNGKRLTGISFAGTLFVLKLGLAF  376 (460)
T ss_pred             HHHHHHHHHHHHHHHHhchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhHHhcCCCchHHHHHHHHHHHHHHHHH
Confidence            111111212122222222  22234455566777777766666777776644       455677788888888999996


Q ss_pred             hhhHHHHHHHhhhh
Q 017754          279 FSGVIASGIYDYYA  292 (366)
Q Consensus       279 ~gp~l~G~l~d~~~  292 (366)
                       |+.+.|.+.+..|
T Consensus       377 -g~~i~g~iL~~~G  389 (460)
T PRK11462        377 -GGALIGWMLAYGG  389 (460)
T ss_pred             -HHHHHHHHHHHcC
Confidence             8999999988654

>PF05977 MFS_3: Transmembrane secretion effector; InterPro: IPR010290 This family consists of the enterobactin exporter EntS proteins and putative permeases all belonging to the major facilitator superfamily

Probab=98.77  E-value=7.2e-07  Score=90.90  Aligned_cols=132  Identities=13%  Similarity=0.101  Sum_probs=96.9

Q ss_pred             HHHhcHHHHHHH-hCCChhHH--HHHHHHHHHhhhhhhhhhhhhhhhhhccCchhHHHHHHHHHHHHHHHHHHh-hhhHH
Q 017754          154 TVIDNLGQICQS-LGYADTSI--YVSMISIWNFLGRVGGGYFSEAIVRKFAYPRPVAMAVAQVVMAFALLYYAI-GWPGE  229 (366)
Q Consensus       154 ~~~~~l~~i~~~-~g~s~~~~--~vsl~~i~~~~g~~~~G~lsD~~grr~~~~R~~~~~~~~~~~~~~~~l~~~-~~~~~  229 (366)
                      .+...+|.+.++ +|.+....  +.+.++++..+|.++.+++.+++.+++..      ..+.++.+++.+.++. .+.+.
T Consensus       236 a~~aLlPl~a~~~l~~~a~~yGll~a~~gvGai~Gal~~~~l~~~~~~~~lv------~~~~~~~a~~~~~lal~~~~~~  309 (524)
T PF05977_consen  236 AVWALLPLFARDVLGGGASGYGLLLAAFGVGAILGALLLPRLRRRLSSRRLV------LLASLLFALALLLLALSPSFWL  309 (524)
T ss_pred             HHHHhhhHHHHHHhCCcHHHHHHHHHHHHHHHHHHHHHHHHhhcccCcchhh------HHHHHHHHHHHHHHhcchHHHH
Confidence            344557877754 67665543  67777778788888777777666554333      5566666666666664 34455


Q ss_pred             HHHHHHHHHHHHhhhhhhHHHHHHHhhCCCchhhHHHHHHhhhhhhHHhhhhHHHHHHHhhhh
Q 017754          230 IYVTTVLVGLSYGAHWAIVPAAASELFGLKSFGALYNFLTLASPAGSLIFSGVIASGIYDYYA  292 (366)
Q Consensus       230 l~~~~~l~G~~~g~~~~~~~~~~se~f~~~~~g~~~g~~~~~~~~G~~i~gp~l~G~l~d~~~  292 (366)
                      ..++.++.|++.....+...+.+-+..|.+.+|..+++..+....+..+ |..+.|.+.|..+
T Consensus       310 ~~~~l~l~G~~~~~~~~~~~t~~Q~~~P~~~~GRv~si~~~~~~g~~~l-Gsll~G~la~~~g  371 (524)
T PF05977_consen  310 ALIALFLAGAAWIIANSSLNTLVQLSVPDWVRGRVFSIYQMVFFGGMPL-GSLLWGFLADHFG  371 (524)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHhHHHHHHHHHHHHHHHH-HHHHHHHHHHHhC
Confidence            5667777888887777777778888888899999999999888777775 9999999999887

EntS exports the siderophore enterobactin out of the cell. The genetic locus entS was changed from ybdA so as to reflect its relevant biological function [].

>KOG2504 consensus Monocarboxylate transporter [Carbohydrate transport and metabolism]

Probab=98.77  E-value=7.8e-08  Score=97.52  Aligned_cols=152  Identities=14%  Similarity=0.146  Sum_probs=121.8

Q ss_pred             hcHHHHHHHhCCChhHH--HHHHHHHHHhhhhhhhhhhhhhhhhhccCchhHHHHHHHHHHHHHHHHHHhh-hhHHHH-H
Q 017754          157 DNLGQICQSLGYADTSI--YVSMISIWNFLGRVGGGYFSEAIVRKFAYPRPVAMAVAQVVMAFALLYYAIG-WPGEIY-V  232 (366)
Q Consensus       157 ~~l~~i~~~~g~s~~~~--~vsl~~i~~~~g~~~~G~lsD~~grr~~~~R~~~~~~~~~~~~~~~~l~~~~-~~~~l~-~  232 (366)
                      -..+.+.++++.+..++  ..++......+..|+.+.+.||+|.|...      .++.++.++|+++..+. +.+.++ .
T Consensus        67 v~~~~~~~~f~~s~~~~~~i~sl~~~~~~~~gpl~s~l~~rfg~R~v~------i~G~~v~~~g~~lssF~~~i~~l~lt  140 (509)
T KOG2504|consen   67 LLFEELMDYFGSSSSQIAWIGSLLLGVYLLAGPLVSALCNRFGCRTVM------IAGGLVAALGLLLSSFATSLWQLYLT  140 (509)
T ss_pred             hhHHHHHHHhCCCccHHHHHHHHHHHHHHHhccHHHHHHhhcCchHHH------HHHHHHHHHHHHHHHHHhhHHHHHHH
Confidence            34556777888776643  78888888888899999999999987766      77888888888776643 344444 4


Q ss_pred             HHHHHHHHHhhhhhhHHHHHHHhhCCCchhhHHHHHHhhhhhhHHhhhhHHHHHHHhhhhhhhhhhhhhccCCCCCcccC
Q 017754          233 TTVLVGLSYGAHWAIVPAAASELFGLKSFGALYNFLTLASPAGSLIFSGVIASGIYDYYAEKQAGLLWKYNGNMLPVSFR  312 (366)
Q Consensus       233 ~~~l~G~~~g~~~~~~~~~~se~f~~~~~g~~~g~~~~~~~~G~~i~gp~l~G~l~d~~~~~~~~~~~~~~~~~~~~~~~  312 (366)
                      ..++.|+|.|..+.....++..+| .|+|+.+.|+...+.++|..++ |++..++.+..|                    
T Consensus       141 ~gvi~G~G~~~~~~paiviv~~YF-~kkR~lA~Gia~~GsG~G~~~~-~~l~~~l~~~~G--------------------  198 (509)
T KOG2504|consen  141 FGVIGGLGLGLIYLPAVVILGTYF-EKKRALATGIAVSGTGVGTVVF-PPLLKYLLSKYG--------------------  198 (509)
T ss_pred             HHHHhhccchhhhcchhhhhhhHh-HHHHHHHHhhhhccCCcceeeH-HHHHHHHHHHhC--------------------
Confidence            567789999988888787888777 7889999999999999999986 888999999998                    


Q ss_pred             CCCCCcccCCcchHHHHHHHHHHHHHHHHHHHHHhh
Q 017754          313 DQETPTCLGSICYSITCGIMAGLCIIAMVMSLIVVH  348 (366)
Q Consensus       313 ~~~~~~c~g~~~~~~~f~i~~~~~~~~~~~~~~~~~  348 (366)
                                  ||.++++.+.+++-+++..+.+.+
T Consensus       199 ------------~r~~~l~~~~~~l~~~~~~~~~rp  222 (509)
T KOG2504|consen  199 ------------WRGALLIFGGISLNVLVAGALLRP  222 (509)
T ss_pred             ------------cHHHHHHHHHHHHHHHHHHHHcCC
Confidence                        999999999888776666665544

>PRK11652 emrD multidrug resistance protein D; Provisional

Probab=98.74  E-value=6e-07  Score=87.76  Aligned_cols=155  Identities=12%  Similarity=0.074  Sum_probs=95.0

Q ss_pred             HHHHhhhhhHHHHHHHHHHhhhhHHHHHhcHHHHHHH-hCCChhHH--HHHHHHHHHhhhhhhhhhhhhhhhhhccCchh
Q 017754          129 LPQALMKADFLLLFFSLVLASGSGLTVIDNLGQICQS-LGYADTSI--YVSMISIWNFLGRVGGGYFSEAIVRKFAYPRP  205 (366)
Q Consensus       129 ~~~~l~~~~~~ll~~~~~~~~~~~~~~~~~l~~i~~~-~g~s~~~~--~vsl~~i~~~~g~~~~G~lsD~~grr~~~~R~  205 (366)
                      +++.++++.+|...+..++.......+....+.+.++ +|++....  ......++..+|.++.+++.||.+++.     
T Consensus       200 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~g~~~~~~l~~~~~~~~-----  274 (394)
T PRK11652        200 YRTLLSNRRFNCYLLMLIGTLAGIAVFEACSGVLMGAVLGLSSMTVSILFILPIPAAFFGAWFAGRPNKRFSTLM-----  274 (394)
T ss_pred             HHHHHcChHHHHHHHHHHHHHHHHHHHHHhChHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----
Confidence            4566778888765554444333333333445556655 78876654  344445555666666677777665311     


Q ss_pred             HHHHHHHHHHHHHHHHHHh---hhhHHHHHHHHHHHHHHhhhhhhHHHHHHHhhCCCchhhHHHHHHhhhhhhHHhhhhH
Q 017754          206 VAMAVAQVVMAFALLYYAI---GWPGEIYVTTVLVGLSYGAHWAIVPAAASELFGLKSFGALYNFLTLASPAGSLIFSGV  282 (366)
Q Consensus       206 ~~~~~~~~~~~~~~~l~~~---~~~~~l~~~~~l~G~~~g~~~~~~~~~~se~f~~~~~g~~~g~~~~~~~~G~~i~gp~  282 (366)
                      .......++..+..+....   .+...++...++.|++.+...+...+...|.++ +++|+..++.+...++|+.+ ++.
T Consensus       275 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~-~~~g~~~~~~~~~~~lg~~~-~~~  352 (394)
T PRK11652        275 WQSVICCLLAGLLMWIPGWFGVMNVWTLLVPAALFFFGAGMLFPLATSGAMEPFP-YLAGTAGALLGGLQNIGSGL-AAL  352 (394)
T ss_pred             HHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc-ccchHHHHHHHHHHHHHHHH-HHH
Confidence            1112222222222222211   223445566777888888888888888888885 67899999999999999996 898


Q ss_pred             HHHHHHhh
Q 017754          283 IASGIYDY  290 (366)
Q Consensus       283 l~G~l~d~  290 (366)
                      ++|++.+.
T Consensus       353 ~~~~~~~~  360 (394)
T PRK11652        353 LSAMLPQT  360 (394)
T ss_pred             HHHHccCC
Confidence            88887554

>PRK11195 lysophospholipid transporter LplT; Provisional

Probab=98.73  E-value=1e-06  Score=86.56  Aligned_cols=127  Identities=12%  Similarity=-0.023  Sum_probs=81.3

Q ss_pred             hcHHHHHH-HhCCChhHH--HHHHHHHHHhhhhhhhhhhhhhhhhhccCchhHHHHHHHHHHHHHHHHHHhh-hhHHHHH
Q 017754          157 DNLGQICQ-SLGYADTSI--YVSMISIWNFLGRVGGGYFSEAIVRKFAYPRPVAMAVAQVVMAFALLYYAIG-WPGEIYV  232 (366)
Q Consensus       157 ~~l~~i~~-~~g~s~~~~--~vsl~~i~~~~g~~~~G~lsD~~grr~~~~R~~~~~~~~~~~~~~~~l~~~~-~~~~l~~  232 (366)
                      ..+|.+.+ .+|++....  ..+...++..+|.+..+++.||.++++..      ..+. ++++..+++... +.....+
T Consensus       226 ~~~~~~~~~~lg~s~~~~G~~~~~~~~g~i~g~~~~~~l~~~~~~~~~~------~~g~-~~~~~~~~~~~~~~~~~~~~  298 (393)
T PRK11195        226 FLVLAWAPVALGITLNQPAYLQAVVAIGIAVGAGAAARLVTLETVLRVL------PAGI-LMGLVVLLMALQHSLLPAYP  298 (393)
T ss_pred             HHHHHHHHHHcCCChhHHHHHHHHHHHHHHHHHHHHHHHhcCCcccchH------HHHH-HHHHHHHHHHHHhHHHHHHH
Confidence            34444444 468877655  66777778888888888888876654332      3333 223333333322 2333445


Q ss_pred             HHHHHHHHHhhhhhhHHHHHHHhhCCCc-hhhHHHHHHhhhhhhHHhhhhHHHHHHHhhhh
Q 017754          233 TTVLVGLSYGAHWAIVPAAASELFGLKS-FGALYNFLTLASPAGSLIFSGVIASGIYDYYA  292 (366)
Q Consensus       233 ~~~l~G~~~g~~~~~~~~~~se~f~~~~-~g~~~g~~~~~~~~G~~i~gp~l~G~l~d~~~  292 (366)
                      ..++.|++.+...+...+.+.+.-+.+. +|.+.++.++...+|..+ +..+.+.+ +..+
T Consensus       299 ~~~~~G~~~g~~~~~~~~~~q~~~~~~~~~g~~~a~~~~~~~~~~~~-~~~~~~~~-~~~~  357 (393)
T PRK11195        299 LLILIGALGGFFVVPMNALLQHRGHVLVGAGHSIAVQNFNENLAMLL-MLGLYSLL-VKLG  357 (393)
T ss_pred             HHHHHHHhhhhhhhhHHHHHHhhCcccccchhHHHHHhHHHHHHHHH-HHHHHHHH-HHcC
Confidence            5667788877766666677777644433 699999999999999996 88888755 4554

>KOG2533 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism]

Probab=98.72  E-value=2.5e-07  Score=93.24  Aligned_cols=143  Identities=14%  Similarity=0.183  Sum_probs=109.8

Q ss_pred             HHHHHHHHHhhhhhhhhhhhhhhhhhccCchhHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHhhhhhhHHHHHH
Q 017754          174 YVSMISIWNFLGRVGGGYFSEAIVRKFAYPRPVAMAVAQVVMAFALLYYAIGWPGEIYVTTVLVGLSYGAHWAIVPAAAS  253 (366)
Q Consensus       174 ~vsl~~i~~~~g~~~~G~lsD~~grr~~~~R~~~~~~~~~~~~~~~~l~~~~~~~~l~~~~~l~G~~~g~~~~~~~~~~s  253 (366)
                      ..+++.++.++|.+.+|.+.||+.-.+     .....+.+....+.+-....+.+.+++.+++.|++-++.|+....+++
T Consensus        86 ~~t~F~v~Yii~~~p~~~L~~r~~ls~-----~l~~~~~~w~~~~~~~~~~~s~~~~ialr~llGl~es~~wP~~~~~lg  160 (495)
T KOG2533|consen   86 LDTVFYVGYIIGQFPSGLLGDRFPLSK-----GLSVSGILWGLFGFLTAAVHSFPGLIALRFLLGLFESGGWPGVVAILG  160 (495)
T ss_pred             HHHHHHHHHHHHHhhHHHHHHhCChHH-----HHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhcccchHHHHHHH
Confidence            889999999999999999999997222     222333333333333333445667888999999999999999999999


Q ss_pred             HhhCCCchhhHHHHHHhhhhhhHHhhhhHHHHHHHhhhhhhhhhhhhhccCCCCCcccCCCCCCcccCCcchHHHHHHHH
Q 017754          254 ELFGLKSFGALYNFLTLASPAGSLIFSGVIASGIYDYYAEKQAGLLWKYNGNMLPVSFRDQETPTCLGSICYSITCGIMA  333 (366)
Q Consensus       254 e~f~~~~~g~~~g~~~~~~~~G~~i~gp~l~G~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~g~~~~~~~f~i~~  333 (366)
                      .+|+.+++|...++.+....+|+.+ |++++..++...+.                          .+..+|++.|.+.+
T Consensus       161 ~wy~~~e~g~r~~~~~a~~~~g~i~-ggliA~g~~~~~~~--------------------------~~~~gW~~~FiI~G  213 (495)
T KOG2533|consen  161 NWYGKSERGLRMGIWYASASLGNIF-GGLIAYGVFKLNGS--------------------------GGLAGWRWLFIIEG  213 (495)
T ss_pred             hhcChhhhhhhHHHHHHhcchhhHH-HHHHHHHhhhhcCC--------------------------CCcCCceeehhHHH
Confidence            9999999999999999999999995 99988887664431                          01124999999999


Q ss_pred             HHHHHHHHHHHHHhh
Q 017754          334 GLCIIAMVMSLIVVH  348 (366)
Q Consensus       334 ~~~~~~~~~~~~~~~  348 (366)
                      +++++..++.+++.+
T Consensus       214 ~i~~~~gi~~f~~lp  228 (495)
T KOG2533|consen  214 VITLVLGIVVFFFLP  228 (495)
T ss_pred             HHHHHHHheEEEEec
Confidence            998887776665543

>COG2211 MelB Na+/melibiose symporter and related transporters [Carbohydrate transport and metabolism]

Probab=98.70  E-value=7.2e-07  Score=88.57  Aligned_cols=155  Identities=15%  Similarity=0.118  Sum_probs=107.2

Q ss_pred             HHhhhhhHHHHHHHHHHhhhhHHHHHhcHHHHHHH-hCCChhHH-HHHHHHHHH-hhhhhhhhhhhhhhhhhccCchhHH
Q 017754          131 QALMKADFLLLFFSLVLASGSGLTVIDNLGQICQS-LGYADTSI-YVSMISIWN-FLGRVGGGYFSEAIVRKFAYPRPVA  207 (366)
Q Consensus       131 ~~l~~~~~~ll~~~~~~~~~~~~~~~~~l~~i~~~-~g~s~~~~-~vsl~~i~~-~~g~~~~G~lsD~~grr~~~~R~~~  207 (366)
                      ..++|+.+.++.+++++...........+.++.+. +|.++... .....+.+. .++.+++..+++|+|+|+.+     
T Consensus       231 ~~~~Nrp~~~~l~~~l~~~~~~~i~~s~~~yy~~y~lg~~~l~~~~~~~~~~~~~l~~~~~~p~L~~~~gkk~~~-----  305 (467)
T COG2211         231 LIFKNRPLLLLLLMNLLLFIAFNIRGSIMVYYVTYVLGDPELFAYLLLLASGAGLLIGLILWPRLVKKFGKKKLF-----  305 (467)
T ss_pred             HHHccchHHHHHHHHHHHHHHHHHHhhhhheeEEEEcCChHHHHHHHHHHHHHHHHHHHHhHHHHHHHhchHHHH-----
Confidence            46678777777666665555444333344444433 45555444 344444444 44588999999999998876     


Q ss_pred             HHHHHHHHHHHHHHHHh-h--hhHHHHHHHHHHHHHHhhhhhhHHHHHHHhh-------CCCchhhHHHHHHhhhhhhHH
Q 017754          208 MAVAQVVMAFALLYYAI-G--WPGEIYVTTVLVGLSYGAHWAIVPAAASELF-------GLKSFGALYNFLTLASPAGSL  277 (366)
Q Consensus       208 ~~~~~~~~~~~~~l~~~-~--~~~~l~~~~~l~G~~~g~~~~~~~~~~se~f-------~~~~~g~~~g~~~~~~~~G~~  277 (366)
                       .++.++.+++.+++.. +  +...+++..++.+++.+...++.+++++|..       |.+.-|..++.+....-+|..
T Consensus       306 -~~~~~~~~i~~~~~~f~~~~~~~l~~~~~~i~~~g~~~~~~l~wam~~d~vDyge~~TG~R~eGi~~s~~tF~~K~g~a  384 (467)
T COG2211         306 -LIGLLLLAVGYLLLYFTPAGSVVLIVVALIIAGVGTGIANPLPWAMVADTVDYGEWKTGVRREGIVYSGMTFFRKLGLA  384 (467)
T ss_pred             -HHHHHHHHHHHHHHHhhcCcchHHHHHHHHHHHHHhhccccccHHHhcchhhHHHHHhCCCchhhHHHHHHHHHHHHHH
Confidence             6666666666655442 2  3345666678889999999999999998764       445678999999999999999


Q ss_pred             hhhhHHHHHHHhhhh
Q 017754          278 IFSGVIASGIYDYYA  292 (366)
Q Consensus       278 i~gp~l~G~l~d~~~  292 (366)
                      + +..+.|++.+..|
T Consensus       385 l-a~~~~g~~L~~~G  398 (467)
T COG2211         385 L-AGFIPGWILGAIG  398 (467)
T ss_pred             H-HHHHHHHHHHHcC
Confidence            6 8889999988765

>COG2807 CynX Cyanate permease [Inorganic ion transport and metabolism]

Probab=98.63  E-value=3.2e-06  Score=80.62  Aligned_cols=154  Identities=17%  Similarity=0.177  Sum_probs=123.8

Q ss_pred             HHHhcHHHHHHHhCCChhHH--HHHHHHHHHhhhhhhhhhhhhhhhhhccCchhHHHHHHHHHHHHHHHHHHhhhhHHHH
Q 017754          154 TVIDNLGQICQSLGYADTSI--YVSMISIWNFLGRVGGGYFSEAIVRKFAYPRPVAMAVAQVVMAFALLYYAIGWPGEIY  231 (366)
Q Consensus       154 ~~~~~l~~i~~~~g~s~~~~--~vsl~~i~~~~g~~~~G~lsD~~grr~~~~R~~~~~~~~~~~~~~~~l~~~~~~~~l~  231 (366)
                      .+-..++++-+++|.+.+.+  ..+++.++..+..++..++..|+|.++..      ..++++.++|.++=.......++
T Consensus        30 svgPLL~~Ir~~~gls~s~aGlLTtLPll~fg~~ap~a~~Lar~~g~er~l------~~~Llli~~G~~iR~~~~~~~L~  103 (395)
T COG2807          30 SVGPLLDEIRQDLGLSFSVAGLLTTLPLLAFGLFAPAAPRLARRFGEERSL------FLALLLIAAGILIRSLGGLPLLF  103 (395)
T ss_pred             hhhhhHHHHHHHhcccHHHHHHHHHHHHHHHHHHHhhhHHHHHHHhhHHHH------HHHHHHHHHHHHHHhcccHHHHH
Confidence            34455777788899988776  88999999999999999999999987765      77777777777664444566788


Q ss_pred             HHHHHHHHHHhhhhhhHHHHHHHhhCCCchhhHHHHHHhhhhhhHHhhhhHHHHHHHhhhhhhhhhhhhhccCCCCCccc
Q 017754          232 VTTVLVGLSYGAHWAIVPAAASELFGLKSFGALYNFLTLASPAGSLIFSGVIASGIYDYYAEKQAGLLWKYNGNMLPVSF  311 (366)
Q Consensus       232 ~~~~l~G~~~g~~~~~~~~~~se~f~~~~~g~~~g~~~~~~~~G~~i~gp~l~G~l~d~~~~~~~~~~~~~~~~~~~~~~  311 (366)
                      .+..+.|+|.+....+.|+.+-+.|| |+.+..+|++.+...+|+.+ ++.++-.+.++.+                   
T Consensus       104 ~gt~l~G~gIav~nVLLPslIK~~Fp-k~~~~mtglYs~sl~~~aaL-aa~lavpla~~~~-------------------  162 (395)
T COG2807         104 LGTLLAGAGIAVINVLLPSLIKRDFP-KRVGLMTGLYSTSLGAGAAL-AAALAVPLAQHSG-------------------  162 (395)
T ss_pred             HHHHHHHhhHHHHHHhhhHHHHhhcc-cchhhHHhHHHHHHHHHHHH-HhhhhhHHHHhhc-------------------
Confidence            99999999999999999999999994 66788999999988888885 7666666655542                   


Q ss_pred             CCCCCCcccCCcchHHHHHHHHHHHHHHHHHHHHH
Q 017754          312 RDQETPTCLGSICYSITCGIMAGLCIIAMVMSLIV  346 (366)
Q Consensus       312 ~~~~~~~c~g~~~~~~~f~i~~~~~~~~~~~~~~~  346 (366)
                                  +|+.+..+.+..++++.+..+.-
T Consensus       163 ------------gW~~aL~~WAl~allAl~~WlPq  185 (395)
T COG2807         163 ------------GWRGALGFWALLALLALLIWLPQ  185 (395)
T ss_pred             ------------cHHHHHHHHHHHHHHHHHHHhhh
Confidence                        29999999998888887766554

>KOG0252 consensus Inorganic phosphate transporter [Inorganic ion transport and metabolism]

Probab=98.63  E-value=8e-08  Score=93.80  Aligned_cols=177  Identities=14%  Similarity=0.075  Sum_probs=116.8

Q ss_pred             HHHHHhhhhHHHHHhcHHHHHHHhCCChhHH----------HHHHHHHHHhh-hhhhhhhhhhhhhhhccCchhHHHHHH
Q 017754          143 FSLVLASGSGLTVIDNLGQICQSLGYADTSI----------YVSMISIWNFL-GRVGGGYFSEAIVRKFAYPRPVAMAVA  211 (366)
Q Consensus       143 ~~~~~~~~~~~~~~~~l~~i~~~~g~s~~~~----------~vsl~~i~~~~-g~~~~G~lsD~~grr~~~~R~~~~~~~  211 (366)
                      ..+|..-.+.+....+...|.++.|+.+...          .-.+...++.+ |-.+..+++|++|||+..      ..+
T Consensus       311 ~~WFllDiafy~~nL~~s~I~~~ig~~~~~~~~~~~~~vA~~~~iia~~~~vPGyw~tv~~id~iGRk~iq------~~G  384 (538)
T KOG0252|consen  311 GTWFLLDIAFYGQNLFQSVIFSAIGVIPSANTYHELFKVAEGNLIIAVCSTVPGYWFTVYFIDIIGRKYIQ------LMG  384 (538)
T ss_pred             HHHHhhhhhhhccccHHHHHHHhhccCCCcchHHHHHHHHHHHHHHHHHccCCceeEEEEEeehhhhHHHH------Hhh
Confidence            3344444445555566777888888754321          22333344444 777888999999998876      777


Q ss_pred             HHHHHHHHHHHHhhhh------HHHHHHHHHHHHHHhhhhhhHHHHHHHhhCCCchhhHHHHHHhhhhhhHHhhhhHHHH
Q 017754          212 QVVMAFALLYYAIGWP------GEIYVTTVLVGLSYGAHWAIVPAAASELFGLKSFGALYNFLTLASPAGSLIFSGVIAS  285 (366)
Q Consensus       212 ~~~~~~~~~l~~~~~~------~~l~~~~~l~G~~~g~~~~~~~~~~se~f~~~~~g~~~g~~~~~~~~G~~i~gp~l~G  285 (366)
                      +.++.+..+.++.+..      +.+....+.+-++.-+..+....+.+|.||.+.||+.+|+....+-+|+.+ |...++
T Consensus       385 F~~~~i~~~~~~~~y~~~~~~~Gf~v~y~l~~ff~NFGPn~ttfivpaE~FParvR~t~hGIsAA~GK~GAiv-g~~~F~  463 (538)
T KOG0252|consen  385 FFIMTIFFFVIAGPYNQLENTIGFVVLYSLTFFFGNFGPNATTFIVPAEIFPARVRSTCHGISAASGKAGAIV-GAFGFL  463 (538)
T ss_pred             HHHHHHHHHHHcCCcccccccCceeehHHHHHHHHhcCCCceeEEeehhhchHHHhhhhhhHHHHhccchHHH-HHHHhh
Confidence            7777777776663322      111122222223333445556667899999999999999999999999996 877777


Q ss_pred             HHHhhhhhhhhhhhhhccCCCCCcccCCCCCCcccCCcchHHHHHHHHHHHHHHHHHHHHHhhhchHHH
Q 017754          286 GIYDYYAEKQAGLLWKYNGNMLPVSFRDQETPTCLGSICYSITCGIMAGLCIIAMVMSLIVVHRTKSVY  354 (366)
Q Consensus       286 ~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~g~~~~~~~f~i~~~~~~~~~~~~~~~~~~~r~~~  354 (366)
                      ++.++.-.+.       .                    .++++|++++++++++.+..+++. +++++-
T Consensus       464 ~~t~~~yp~~-------~--------------------g~~~v~~i~~~~~~~gi~~T~l~p-Etk~~~  504 (538)
T KOG0252|consen  464 YLTDHNYPPN-------I--------------------GVRNVFIILAGCMLLGILFTLLIP-ETKGKS  504 (538)
T ss_pred             HhhhccCCcc-------c--------------------cchHHHHHHHHHHHHhHheeEEee-cccccC
Confidence            6666321000       0                    289999999999999988877766 555433

>TIGR00788 fbt folate/biopterin transporter

Probab=98.62  E-value=1.3e-06  Score=88.03  Aligned_cols=171  Identities=19%  Similarity=0.153  Sum_probs=109.1

Q ss_pred             HHHHHHHHHHhhhhHHHHHhcHHHHHH-HhCCChhHH--HHHHHHHHHhhhhhhhhhhhhhhhhhccCchhHHHHHHHHH
Q 017754          138 FLLLFFSLVLASGSGLTVIDNLGQICQ-SLGYADTSI--YVSMISIWNFLGRVGGGYFSEAIVRKFAYPRPVAMAVAQVV  214 (366)
Q Consensus       138 ~~ll~~~~~~~~~~~~~~~~~l~~i~~-~~g~s~~~~--~vsl~~i~~~~g~~~~G~lsD~~grr~~~~R~~~~~~~~~~  214 (366)
                      ..++...++..... ......++.+.+ ++|.+.+++  +.++..+.-.+ .+++|.++|+++. ..++|++++.++.++
T Consensus        28 ~~~~~~~y~~qGl~-~l~~~~~~~~l~~~lg~s~~~i~~~~sl~~lpw~~-K~l~g~l~D~~~i-~G~rRr~~l~~~~~l  104 (468)
T TIGR00788        28 LAIGLQVLFVKGIA-GLMRLPLSPMLTDDLGLDGARYQRLVGLSSLGWAL-KPFAGVMSDTFPL-FGYTKRWYLVLSGLL  104 (468)
T ss_pred             HHHHHHHHHHhhHH-HHhhhhhhHHHHHhcCCCHHHHHHHHHHHHHHHHH-HHHHHHHHHhcCC-CCccchHHHHHHHHH
Confidence            34444445554444 334444555555 689998876  56666665555 5669999999962 234455566666655


Q ss_pred             H-HHHHHHHHhh-hhHHHH-HHHHHHHHHHhhhhhhHHHHHHHhhCCCchhh---HHHHHHhhhhhhHHhhhhHHHHHHH
Q 017754          215 M-AFALLYYAIG-WPGEIY-VTTVLVGLSYGAHWAIVPAAASELFGLKSFGA---LYNFLTLASPAGSLIFSGVIASGIY  288 (366)
Q Consensus       215 ~-~~~~~l~~~~-~~~~l~-~~~~l~G~~~g~~~~~~~~~~se~f~~~~~g~---~~g~~~~~~~~G~~i~gp~l~G~l~  288 (366)
                      . ++++..++.. +....+ +..++.+++.+.+-...-++..|..+ +..+.   ..+.......+|..+ |+.++|.+.
T Consensus       105 ~~~~~~~~l~~~~~~~~~~~~~~~l~~~~~a~~dv~~da~~~e~~~-~~~~~~~~~~s~~~~~~~~G~~v-g~~l~G~l~  182 (468)
T TIGR00788       105 GSAILYGLLPGKVSSAKVAAAFIFLAALAKALYDVLVDSLYSERIR-ESPSAGPSLVSWMWGASATGGLI-SSLLGGPLL  182 (468)
T ss_pred             HHHHHHHhcccccchHHHHHHHHHHHHHHHHHHHHhHHHHHhhhhh-cCCCcCCCeeeHHHHHHHHHHHH-HHHHHHHHH
Confidence            5 3443333322 222233 35667788888888888889999987 44333   334444445578885 999999999


Q ss_pred             hhhhhhhhhhhhhccCCCCCcccCCCCCCcccCCcchHHHHHHHHHHHHHHHHHHHH
Q 017754          289 DYYAEKQAGLLWKYNGNMLPVSFRDQETPTCLGSICYSITCGIMAGLCIIAMVMSLI  345 (366)
Q Consensus       289 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~g~~~~~~~f~i~~~~~~~~~~~~~~  345 (366)
                      +..+                                |+..|++.+++.++..+..++
T Consensus       183 ~~~~--------------------------------~~~~f~~~a~l~ll~~~~~~~  207 (468)
T TIGR00788       183 DKTL--------------------------------TRILFLITAALLLLQLFVSNL  207 (468)
T ss_pred             HhcC--------------------------------cchHHHHHHHHHHHHHHHHHh
Confidence            8876                                999999988887776443333

The only functionally characterized members of the family are from protozoa and include FT1, the major folate transporter in Leishmania, and BT1, the Leishmania biopterin/folate transporter. A related protein in Trypanosoma brucei, ESAGIO, shows weak folate/biopterin transport activity.

>PRK09669 putative symporter YagG; Provisional

Probab=98.61  E-value=1.1e-06  Score=87.59  Aligned_cols=163  Identities=15%  Similarity=0.115  Sum_probs=100.6

Q ss_pred             hcHHH-HHHHhCCChhHH--HHHHHHHHHhhhhhhhhhhhhhhhhhccCchhHHHHHHHHHHHHHHHH-HHhhh---h--
Q 017754          157 DNLGQ-ICQSLGYADTSI--YVSMISIWNFLGRVGGGYFSEAIVRKFAYPRPVAMAVAQVVMAFALLY-YAIGW---P--  227 (366)
Q Consensus       157 ~~l~~-i~~~~g~s~~~~--~vsl~~i~~~~g~~~~G~lsD~~grr~~~~R~~~~~~~~~~~~~~~~l-~~~~~---~--  227 (366)
                      .+++. +.+.+|.+...+  ..++.-+++.+..|+.|+++||...|+..+|++++.. .+..++..++ +..++   .  
T Consensus        30 ~~l~~~~t~~~gls~~~~g~i~~i~~i~dai~dp~~G~lsD~~~~r~Grrrp~il~~-~~~~~i~~~l~f~~p~~~~~~~  108 (444)
T PRK09669         30 LFLAYFYTDVFGLSAAIMGTMFLVVRVLDAVTDPLMGALVDRTRTRHGQFRPYLLWF-AIPFGVVCLLTFYTPDFGATGK  108 (444)
T ss_pred             HHHHHHHHHhcCCCHHHHHHHHHHHHHHHHcccceeeEeeecCCCCCCCcchhHHHH-HHHHHHHHHHHHhCCCCCcchH
Confidence            33444 445689987765  7888889999999999999999877666556655443 3333333333 32221   1  


Q ss_pred             -HHHHHHHHHHHHHHhhhhhhHHHHHHHhh-CCCchhhHHHHHHhhhhhhHHhhhhHHHHHHHhhhhhhhhhhhhhccCC
Q 017754          228 -GEIYVTTVLVGLSYGAHWAIVPAAASELF-GLKSFGALYNFLTLASPAGSLIFSGVIASGIYDYYAEKQAGLLWKYNGN  305 (366)
Q Consensus       228 -~~l~~~~~l~G~~~g~~~~~~~~~~se~f-~~~~~g~~~g~~~~~~~~G~~i~gp~l~G~l~d~~~~~~~~~~~~~~~~  305 (366)
                       ...++..++++.++........++.+|+. ..++|....+.-.....+|+.+ ++.+...+....+...          
T Consensus       109 ~~~~~~~~~l~~~~~t~~~ip~~al~~~~t~~~~eR~~l~~~r~~~~~~G~~i-~~~~~~pl~~~~~~~~----------  177 (444)
T PRK09669        109 IIYACVTYILLSLVYTAINVPYCAMPGAITNDPRERHSLQSWRFALSFIGGLI-VSVIALPLVDILGKGD----------  177 (444)
T ss_pred             HHHHHHHHHHHHHHHHhhcchHHHhHHHhcCCHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHhCCCc----------
Confidence             12233344556666665566667888887 4467888888877777777775 5555444443322100          


Q ss_pred             CCCcccCCCCCCcccCCcchHHHHHHHHHHHHHHHHHHHHH
Q 017754          306 MLPVSFRDQETPTCLGSICYSITCGIMAGLCIIAMVMSLIV  346 (366)
Q Consensus       306 ~~~~~~~~~~~~~c~g~~~~~~~f~i~~~~~~~~~~~~~~~  346 (366)
                                     ....|+..+.+.+++++++.+.+++.
T Consensus       178 ---------------~~~g~~~~~~i~~ii~~v~~~~~~~~  203 (444)
T PRK09669        178 ---------------EQKGYFYAMMVMGLLGVVLFFCCFFM  203 (444)
T ss_pred             ---------------hhhhHHHHHHHHHHHHHHHHHHHhCC
Confidence                           00138888888887777666555443

>COG0738 FucP Fucose permease [Carbohydrate transport and metabolism]

Probab=98.57  E-value=3.6e-06  Score=81.30  Aligned_cols=133  Identities=9%  Similarity=-0.034  Sum_probs=108.1

Q ss_pred             hHHHHHhcHHHHHHHhCCChhHH--HHHHHHHHHhhhhhhhhhhhhhhhhhccCchhHHHHHHHHHHHHHHHHHHh----
Q 017754          151 SGLTVIDNLGQICQSLGYADTSI--YVSMISIWNFLGRVGGGYFSEAIVRKFAYPRPVAMAVAQVVMAFALLYYAI----  224 (366)
Q Consensus       151 ~~~~~~~~l~~i~~~~g~s~~~~--~vsl~~i~~~~g~~~~G~lsD~~grr~~~~R~~~~~~~~~~~~~~~~l~~~----  224 (366)
                      ........+|++.+.+..+..++  .-..+..+.+++.+-.|++.+|+|+|+.+      ..++.++++++.++..    
T Consensus        28 ~~~l~diLip~l~~~f~ls~~~a~liqfaff~gYf~~~lpa~~~~kk~gyk~gi------~lgL~l~avg~~lF~pAa~~  101 (422)
T COG0738          28 ITCLNDILIPHLKEVFDLTYFEASLIQFAFFGGYFIMSLPAGLLIKKLGYKAGI------VLGLLLYAVGAALFWPAASS  101 (422)
T ss_pred             HhhcchhhHHHHHHHhCccHHHHHHHHHHHHHHHHHHhccHHHHHHHhhhHHHH------HHHHHHHHHHHHHHhhhhhh
Confidence            33344556788888888887766  55555667778889999999999999887      8999999999988752    


Q ss_pred             hhhHHHHHHHHHHHHHHhhhhhhHHHHHHHhhCCCchhhHHHHHHhhhhhhHHhhhhHHHHHHHhh
Q 017754          225 GWPGEIYVTTVLVGLSYGAHWAIVPAAASELFGLKSFGALYNFLTLASPAGSLIFSGVIASGIYDY  290 (366)
Q Consensus       225 ~~~~~l~~~~~l~G~~~g~~~~~~~~~~se~f~~~~~g~~~g~~~~~~~~G~~i~gp~l~G~l~d~  290 (366)
                      .+...+.++.++.|.|.|..-+...++++.+.++++-....|+....+++|+.+ +|++++++.++
T Consensus       102 ~~y~~FL~~lFila~Gi~~LetaaNp~v~~lg~~~~a~~rlnl~q~fn~lGa~~-gp~~g~~lils  166 (422)
T COG0738         102 KSYGFFLVALFILASGIGLLETAANPYVTLLGKPESAAFRLNLAQAFNGLGAIL-GPLLGSSLILS  166 (422)
T ss_pred             hhHHHHHHHHHHHHhhhHHHHhccchHHHHhCCchhHHHHHHHHHHhhhhHHHH-HHHHHHHHHHh
Confidence            223455666778888888888888889999999988888999999999999997 99999999884

>KOG0252 consensus Inorganic phosphate transporter [Inorganic ion transport and metabolism]

Probab=98.55  E-value=8.6e-07  Score=86.72  Aligned_cols=108  Identities=18%  Similarity=0.240  Sum_probs=85.2

Q ss_pred             HHHHHHHHHhhhhhhhhhhhhhhhhhccCchhHHHHHHHHHHHHHHHHHHh----hhh----HHHHHHHHHHHHHHhhhh
Q 017754          174 YVSMISIWNFLGRVGGGYFSEAIVRKFAYPRPVAMAVAQVVMAFALLYYAI----GWP----GEIYVTTVLVGLSYGAHW  245 (366)
Q Consensus       174 ~vsl~~i~~~~g~~~~G~lsD~~grr~~~~R~~~~~~~~~~~~~~~~l~~~----~~~----~~l~~~~~l~G~~~g~~~  245 (366)
                      .-....+++++|+++.|++.|++|||+.+      ...++++.++.++.+.    ..+    ..+...+++.|+|.|+-+
T Consensus        89 Vn~~A~vGti~GQl~FG~lgD~~GRK~vY------G~~liImIi~t~~~~~s~~~~~~~~~m~~L~~~R~~LGiGIGGDY  162 (538)
T KOG0252|consen   89 VNAAALVGTIFGQLFFGWLGDKFGRKKVY------GKELIIMIICSALSGLSVGTTSPLGVMMTLCFFRFLLGIGIGGDY  162 (538)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhhhcchhhh------hHHHHHHHHHHHHhccCCCCCCCcchhhHHHHHHHHhhccccCCC
Confidence            56667789999999999999999999988      6666666666655442    122    356678899999999999


Q ss_pred             hhHHHHHHHhhCCCchhhHHHHHHhhhhhhHHhhhhHHHHHHH
Q 017754          246 AIVPAAASELFGLKSFGALYNFLTLASPAGSLIFSGVIASGIY  288 (366)
Q Consensus       246 ~~~~~~~se~f~~~~~g~~~g~~~~~~~~G~~i~gp~l~G~l~  288 (366)
                      ++..+++||.-..+.||+..+.+.....+|.+. |.+++-.+.
T Consensus       163 PlSAtI~SE~an~~~RGa~iaavFa~Qg~Gila-G~ivt~Iv~  204 (538)
T KOG0252|consen  163 PLSATIMSESANKKTRGAFIAAVFAMQGFGILA-GGIVALIVS  204 (538)
T ss_pred             cchHHHhhhhhhhccccceeEEEEEecchhHhh-ccHHHHHHH
Confidence            999999999999999999998888887777773 665544443

>KOG0569 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism]

Probab=98.50  E-value=1.2e-06  Score=87.80  Aligned_cols=101  Identities=23%  Similarity=0.307  Sum_probs=81.3

Q ss_pred             HHHHHHHHHhhhhhhhhhhhhhhhhhccCchhHHHHHHHHHHHHHHHH--HH--hhhhHHHHHHHHHHHHHHhhhhhhHH
Q 017754          174 YVSMISIWNFLGRVGGGYFSEAIVRKFAYPRPVAMAVAQVVMAFALLY--YA--IGWPGEIYVTTVLVGLSYGAHWAIVP  249 (366)
Q Consensus       174 ~vsl~~i~~~~g~~~~G~lsD~~grr~~~~R~~~~~~~~~~~~~~~~l--~~--~~~~~~l~~~~~l~G~~~g~~~~~~~  249 (366)
                      .++.+.+++++|....|+++|++|||...      .+..++..++.++  +.  ......+.+++++.|+..|......+
T Consensus        65 ~vs~f~iG~~~Gs~~~~~la~~~GRK~~l------~~~~~l~~~~~~~~~~s~~~~~~e~li~GR~i~Gl~~gl~~~~~p  138 (485)
T KOG0569|consen   65 IVSIFFIGGMIGSFSSGLLADRFGRKNAL------LLSNLLAVLAALLMGLSKSAPSFEMLILGRLIVGLACGLSTGLVP  138 (485)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhhcchHHH------HHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhHHHHHHHH
Confidence            89999999999999999999999999655      3333333333222  22  34455788999999999999999999


Q ss_pred             HHHHHhhCCCchhhHHHHHHhhhhhhHHhhhh
Q 017754          250 AAASELFGLKSFGALYNFLTLASPAGSLIFSG  281 (366)
Q Consensus       250 ~~~se~f~~~~~g~~~g~~~~~~~~G~~i~gp  281 (366)
                      .++.|.-|.+.||..-.+..++..+|..+ +.
T Consensus       139 myl~E~sP~~~RG~~g~~~~~~~~~g~ll-~~  169 (485)
T KOG0569|consen  139 MYLTEISPKNLRGALGTLLQIGVVIGILL-GQ  169 (485)
T ss_pred             HHHhhcChhhhccHHHHHHHHHHHHHHHH-HH
Confidence            99999999999999998888888888885 53

>TIGR00924 yjdL_sub1_fam amino acid/peptide transporter (Peptide:H+ symporter), bacterial

Probab=98.48  E-value=2.6e-05  Score=78.72  Aligned_cols=142  Identities=15%  Similarity=0.147  Sum_probs=100.8

Q ss_pred             HHHHHHHHHhhhhhhhhhhhhhhhhhccCch-hHHHHHHHHHHHHHHHHHHh----------hhhHHHHHHHHHHHHHHh
Q 017754          174 YVSMISIWNFLGRVGGGYFSEAIVRKFAYPR-PVAMAVAQVVMAFALLYYAI----------GWPGEIYVTTVLVGLSYG  242 (366)
Q Consensus       174 ~vsl~~i~~~~g~~~~G~lsD~~grr~~~~R-~~~~~~~~~~~~~~~~l~~~----------~~~~~l~~~~~l~G~~~g  242 (366)
                      +.++-.+.-.+..++..++-.+..||..-++ ..-+.++.++.+++++.++.          .+.+.+.+..++.++|-.
T Consensus       317 ~~~~n~~~iil~~p~~~~~~~~l~~~~~~~~~~~k~~~G~~l~~~~~~~~~~~~~~~~~~~~~s~~~~i~~~~~~~~ge~  396 (475)
T TIGR00924       317 FQSLNPFWVVVGSPVLAMIWTRLGRKGKDPTTPLKFTLGMLFCGASFLTFAASIWFADAGGLTSPWFMVLIYLFQTLGEL  396 (475)
T ss_pred             HHhhhHHHHHHHHHHHHHHHHHHHhCCCCCCcHHHHHHHHHHHHHHHHHHHHHHhhcCCCCccCHHHHHHHHHHHHHHHH
Confidence            5666666666666665554455555422122 22246777777777666542          244567778889999999


Q ss_pred             hhhhhHHHHHHHhhCCCchhhHHHHHHhhhhhhHHhhhhHHHHHHHhhhhhhhhhhhhhccCCCCCcccCCCCCCcccCC
Q 017754          243 AHWAIVPAAASELFGLKSFGALYNFLTLASPAGSLIFSGVIASGIYDYYAEKQAGLLWKYNGNMLPVSFRDQETPTCLGS  322 (366)
Q Consensus       243 ~~~~~~~~~~se~f~~~~~g~~~g~~~~~~~~G~~i~gp~l~G~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~g~  322 (366)
                      ...+...+++++..|.+.+|..+|+..+...+|..+ ++.+.+...+..+                              
T Consensus       397 ~~~p~~~~~~~~~aP~~~~g~~~g~~~l~~~~g~~l-~~~~~~~~~~~~~------------------------------  445 (475)
T TIGR00924       397 MISPLGLSWWTKIAPQRLMGQMLGMWFLAQAMGSLL-GGYLATFGAVPQG------------------------------  445 (475)
T ss_pred             HHhHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHhcccc------------------------------
Confidence            999999999999999999999999999999999996 8888877766544                              


Q ss_pred             cchHHHHHHHHHHHHHHHHHHHHHhh
Q 017754          323 ICYSITCGIMAGLCIIAMVMSLIVVH  348 (366)
Q Consensus       323 ~~~~~~f~i~~~~~~~~~~~~~~~~~  348 (366)
                        |...|...++++++..++.+++.+
T Consensus       446 --~~~~~~~~~~~~~~~~~~~~~~~~  469 (475)
T TIGR00924       446 --VTGVFGKIGLVTLLVGVVMALMVP  469 (475)
T ss_pred             --hhhHHHHHHHHHHHHHHHHHHHHH
Confidence              777777777766666655554443

The model describes proton-dependent oligopeptide transporters in bacteria. This model is restricted in its range in recognizing bacterial proton-dependent oligopeptide transporters, although they are found in yeast, plants and animals. They function by proton symport in a 1:1 stoichiometry, which is variable in different species. All of them are predicted to contain 12 transmembrane domains, for which limited experimental evidence exists.

>TIGR00926 2A1704 Peptide:H+ symporter (also transports b-lactam antibiotics, the antitumor agent, bestatin, and various protease inhibitors)

Probab=98.47  E-value=4.5e-06  Score=87.13  Aligned_cols=150  Identities=20%  Similarity=0.301  Sum_probs=109.6

Q ss_pred             HHHhCCChhHH--HHHHHHHHHhhhhhhhhhhhhhh-hhhccCchhHHHHHHHHHHHHHHHHHHhhh---------hHHH
Q 017754          163 CQSLGYADTSI--YVSMISIWNFLGRVGGGYFSEAI-VRKFAYPRPVAMAVAQVVMAFALLYYAIGW---------PGEI  230 (366)
Q Consensus       163 ~~~~g~s~~~~--~vsl~~i~~~~g~~~~G~lsD~~-grr~~~~R~~~~~~~~~~~~~~~~l~~~~~---------~~~l  230 (366)
                      ...+|++.+.+  ....+.....+..+++|+++|++ |+++..      .++.++..+|+.+++...         ....
T Consensus        15 ~~~lg~~~~~A~~i~~~f~~l~yl~pilGg~iAD~~lG~~~tI------l~~~ii~~lG~~llai~a~~~~~~~~~~~~~   88 (654)
T TIGR00926        15 LNFLGFSESTSTVLFHTFTYLCYLTPLIGAIIADGWLGKFKTI------LYLSIVYVVGHALLSFGAIPSSGHPLHDLLD   88 (654)
T ss_pred             HHHcCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHH------HHHHHHHHHHHHHHHhccCcccccchHHHHH
Confidence            34578877654  56666666677888999999986 555444      666677777777765321         1235


Q ss_pred             HHHHHHHHHHHhhhhhhHHHHHHHhhCCC---chhhHHHHHHhhhhhhHHhhhhHHHHHHHhhhhhhhhhhhhhccCCCC
Q 017754          231 YVTTVLVGLSYGAHWAIVPAAASELFGLK---SFGALYNFLTLASPAGSLIFSGVIASGIYDYYAEKQAGLLWKYNGNML  307 (366)
Q Consensus       231 ~~~~~l~G~~~g~~~~~~~~~~se~f~~~---~~g~~~g~~~~~~~~G~~i~gp~l~G~l~d~~~~~~~~~~~~~~~~~~  307 (366)
                      +++..+..+|.|+.-+...+...|.|..+   .+-..+++..++.++|+++ ++++.+++.+..+               
T Consensus        89 l~gLaLia~G~GgiKp~vsaf~gdqf~~~~~~~~~s~F~~fY~~iNiGSli-s~~i~~~l~~~~~---------------  152 (654)
T TIGR00926        89 LLGLALIALGTGGIKPCVSAFGGDQFEERQLSLRSRFFSFFYFAINAGSLI-STIITPILRGDVG---------------  152 (654)
T ss_pred             HHHHHHHHhhccccccCchhhhHhhcCccchhHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHhhc---------------
Confidence            56777788888998899999999999754   3778899999999999996 8999998865442               


Q ss_pred             CcccCCCCCCcccC-CcchHHHHHHHHHHHHHHHHHHHH
Q 017754          308 PVSFRDQETPTCLG-SICYSITCGIMAGLCIIAMVMSLI  345 (366)
Q Consensus       308 ~~~~~~~~~~~c~g-~~~~~~~f~i~~~~~~~~~~~~~~  345 (366)
                                 |.| ..||..+|.+.+++.+++.++.+.
T Consensus       153 -----------~fg~~~~~~~aF~i~~i~m~ia~lvf~~  180 (654)
T TIGR00926       153 -----------CFGCQDCYPLAFGVPAILMILALIVFMA  180 (654)
T ss_pred             -----------ccccCcchHHHHHHHHHHHHHHHHHHHH
Confidence                       333 236999999988888777665543

>KOG3764 consensus Vesicular amine transporter [Intracellular trafficking, secretion, and vesicular transport]

Probab=98.43  E-value=2.9e-06  Score=81.74  Aligned_cols=182  Identities=13%  Similarity=0.070  Sum_probs=110.7

Q ss_pred             CCHHHHhhhhhHHHHHHHHHHhhhhHHHHHhcHHHHH-HHhCCChhHH--HHHHHHHHHhhhhhhhhhhhhhhhhhccCc
Q 017754          127 FTLPQALMKADFLLLFFSLVLASGSGLTVIDNLGQIC-QSLGYADTSI--YVSMISIWNFLGRVGGGYFSEAIVRKFAYP  203 (366)
Q Consensus       127 ~~~~~~l~~~~~~ll~~~~~~~~~~~~~~~~~l~~i~-~~~g~s~~~~--~vsl~~i~~~~g~~~~G~lsD~~grr~~~~  203 (366)
                      .++++++++|..|+...+...........-..++... +.+.-+.-+.  ..-..++...+|..+.|.++||++.-    
T Consensus       261 ~~~~~Ll~dP~I~~~agai~~~n~~lafLePtlslwm~e~m~~p~w~~G~~fLp~~~~y~ig~~lfg~la~k~~~~----  336 (464)
T KOG3764|consen  261 TPMWSLLMDPYILLIAGAITFSNSSLAFLEPTLSLWMLETMFTPGWEVGLAFLPASLSYAIGTNLFGKLADKYPHL----  336 (464)
T ss_pred             ccHHHHHhCchHhhhhcchhhccchHHHhCcccHHHHHHhccCCCcceeeeecccccchhccCchHHHHHHhcCch----
Confidence            3577888999888766554433333333344455433 3444222122  22234566788999999999999742    


Q ss_pred             hhHHHHHHHHHHHHHHHHHHh-hhhHHHHHHHHHHHHHHhhhhhhHHHHHHHhhCCC------chhhHHHHHHhhhhhhH
Q 017754          204 RPVAMAVAQVVMAFALLYYAI-GWPGEIYVTTVLVGLSYGAHWAIVPAAASELFGLK------SFGALYNFLTLASPAGS  276 (366)
Q Consensus       204 R~~~~~~~~~~~~~~~~l~~~-~~~~~l~~~~~l~G~~~g~~~~~~~~~~se~f~~~------~~g~~~g~~~~~~~~G~  276 (366)
                      |-...+.++++.++....... .+...+++-....+++.+...+....+...+...+      .+|..|++...+..+|.
T Consensus       337 ~wl~~~~gl~~~G~~~~~iP~~~~~~~L~vp~~~l~~~i~~~dasl~P~l~~lvd~rh~s~~~vYGsVyaIad~a~sla~  416 (464)
T KOG3764|consen  337 RWLLSLGGLATVGVSSGPIPFATSIAQLWVPNFGLGFGIGLADASLIPTLGYLVDPRHVSGFNVYGSVYAIADAAFSLAY  416 (464)
T ss_pred             hHHHHHHHHHHHHHHhchhHhhhhHHHHhhhhHHHHHHHHHHHHHHhhhhHHhcchhhccccceeeeHHHHHHHHHHHhh
Confidence            211123333333332222222 23334555555555555555555444444444333      58999999999999999


Q ss_pred             HhhhhHHHHHHHhhhhhhhhhhhhhccCCCCCcccCCCCCCcccCCcchHHHHHHHHHHHHHHHHHHHH
Q 017754          277 LIFSGVIASGIYDYYAEKQAGLLWKYNGNMLPVSFRDQETPTCLGSICYSITCGIMAGLCIIAMVMSLI  345 (366)
Q Consensus       277 ~i~gp~l~G~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~g~~~~~~~f~i~~~~~~~~~~~~~~  345 (366)
                      .+ ||.++|.++...|                                |+|...+++...++-+-+...
T Consensus       417 a~-GP~~gg~iv~~iG--------------------------------F~wl~~iig~~n~iyapvl~l  452 (464)
T KOG3764|consen  417 AI-GPTFGGSLVEAIG--------------------------------FEWLMTIIGILNLIYAPVLLL  452 (464)
T ss_pred             hc-cccccchheeehh--------------------------------HHHHHHHHHHHHHHHHHHHHH
Confidence            96 9999999999888                                999988888877775544433

>PF01306 LacY_symp: LacY proton/sugar symporter; InterPro: IPR022814 In bacteria there are a number of families of transport proteins, including symporters and antiporters, that mediate the intake of a variety of sugars with the concomitant uptake of hydrogen ions (proton symporters) []

Probab=98.43  E-value=4e-06  Score=82.40  Aligned_cols=154  Identities=14%  Similarity=0.173  Sum_probs=87.4

Q ss_pred             hhhhhHHHHHHHHHHhhhhHHHHHhcHHHHHHH-hCCChhHH--HHHHHHHHHhhhhhhhhhhhhhhhhhccCchhHHHH
Q 017754          133 LMKADFLLLFFSLVLASGSGLTVIDNLGQICQS-LGYADTSI--YVSMISIWNFLGRVGGGYFSEAIVRKFAYPRPVAMA  209 (366)
Q Consensus       133 l~~~~~~ll~~~~~~~~~~~~~~~~~l~~i~~~-~g~s~~~~--~vsl~~i~~~~g~~~~G~lsD~~grr~~~~R~~~~~  209 (366)
                      .|++.+|.+...+++..+.........+..+++ .|++.+++  ..+..++...+.+|+.|.++||++.|+..   .+..
T Consensus         4 ~~~~~~~~~s~~~f~~Ff~~gi~~pF~~iWL~~~~GLs~~~iG~i~s~~~~~~l~~qp~~G~i~Dklg~kK~L---l~~i   80 (412)
T PF01306_consen    4 FKNKNYWWLSLFYFFYFFIWGIFLPFFPIWLTQVAGLSGTEIGIIFSAGSLFALLAQPVYGFISDKLGLKKHL---LWFI   80 (412)
T ss_dssp             CHSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHTHHHHHHHHHHCTTCSHH---HHHH
T ss_pred             ccCchHHHHHHHHHHHHHHHHHHHHHHHHHHccccCCCHHHHHHHHHHHHHHHHHHHHhHHHhcchhhhhHHH---HHHH
Confidence            367788877666666655555566667777765 89998877  88888899999999999999999976543   1222


Q ss_pred             HHHHHHHHHHHHHHhh-h-hHHHHHHH----HHHHHHHhhhhhhHHHHHHHhhCCCchhhHHHHHHhhhhhhHHhhhhHH
Q 017754          210 VAQVVMAFALLYYAIG-W-PGEIYVTT----VLVGLSYGAHWAIVPAAASELFGLKSFGALYNFLTLASPAGSLIFSGVI  283 (366)
Q Consensus       210 ~~~~~~~~~~~l~~~~-~-~~~l~~~~----~l~G~~~g~~~~~~~~~~se~f~~~~~g~~~g~~~~~~~~G~~i~gp~l  283 (366)
                      ....+....++.+... - ....+++.    +..|+++.+..++.=+++.. + .+..+--||=.-+.+.+|-.+ +..+
T Consensus        81 ~~l~~l~~pff~~v~~pll~~n~~lg~iig~i~l~~~f~~~~~~~Ea~~er-~-sr~~~feYG~~R~wGSig~ai-~s~~  157 (412)
T PF01306_consen   81 AILLLLFGPFFIYVFGPLLQSNFWLGAIIGGIYLGLVFNAGVPLSEAYAER-V-SRRNGFEYGRARMWGSIGFAI-ASLL  157 (412)
T ss_dssp             HHHHHTCHHHHHHTHHHHHHTT-HHHHHHTTTTTTTTTTTHHHHHHHHHHH-H-HHHHSS-HHHHHHHHHHHHHH-HHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccchHHHHHHHH-H-HHHhcCCcchHHHHhhHHHHH-HHHH
Confidence            2222222222222211 0 11122222    22344344434444333322 2 233455566666777777775 7788


Q ss_pred             HHHHHhhhh
Q 017754          284 ASGIYDYYA  292 (366)
Q Consensus       284 ~G~l~d~~~  292 (366)
                      +|++++...
T Consensus       158 ~G~L~~i~p  166 (412)
T PF01306_consen  158 AGILFNINP  166 (412)
T ss_dssp             HHHHHHHHH
T ss_pred             hheeeeeCc
Confidence            999987543

The lacY family of Escherichia coli and Klebsiella pneumoniae are proton/beta-galactoside symporters, which, like most sugar transporters, are integral membrane proteins with 12 predicted transmembrane (TM) regions. Also similar to the lacY family are the rafinose (rafB) and sucrose (cscB) permeases from E. coli []. This entry also includes bacterial phenylproprionate permease.; PDB: 1PV7_B 1PV6_A 2Y5Y_B 2CFQ_A 2V8N_B 2CFP_A.

>TIGR00889 2A0110 nucleoside transporter

Probab=98.42  E-value=5.6e-06  Score=82.14  Aligned_cols=121  Identities=16%  Similarity=0.112  Sum_probs=72.2

Q ss_pred             HHhcHHHHH-HHhCCChhHH--HHHHHHHHHhhhhhhhhhhhhhhhhhccCchhHHHHHHHHHHHHHHHHHHh-hhhHHH
Q 017754          155 VIDNLGQIC-QSLGYADTSI--YVSMISIWNFLGRVGGGYFSEAIVRKFAYPRPVAMAVAQVVMAFALLYYAI-GWPGEI  230 (366)
Q Consensus       155 ~~~~l~~i~-~~~g~s~~~~--~vsl~~i~~~~g~~~~G~lsD~~grr~~~~R~~~~~~~~~~~~~~~~l~~~-~~~~~l  230 (366)
                      ....++.+. +++|++..++  +.+...++..++.+.+|+++||+|||+..     +.++.++.+++..+... .+...+
T Consensus        21 ~~~~l~~~l~~~~g~s~~~iGl~~a~~~~~~~i~~~~~g~l~dr~g~~r~~-----~~~~~~~~~~~~~~~~~~~~~~~~   95 (418)
T TIGR00889        21 WLVTLGSYMSKTLHFSGAEIGWVYSSTGIAAILMPILVGIIADKWLSAQKV-----YAVCHFAGALLLFFAAQVTTPAGM   95 (418)
T ss_pred             HHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccHHH-----HHHHHHHHHHHHHHHHHhcCHHHH
Confidence            334444444 5589998776  78999999999999999999999763321     23444444444444332 344556


Q ss_pred             HHHHHHHHHHHhhhhhhHHHHHHHh--------hCCCchhhHHHHHHhhhhhhHHhhhhHHHHHH
Q 017754          231 YVTTVLVGLSYGAHWAIVPAAASEL--------FGLKSFGALYNFLTLASPAGSLIFSGVIASGI  287 (366)
Q Consensus       231 ~~~~~l~G~~~g~~~~~~~~~~se~--------f~~~~~g~~~g~~~~~~~~G~~i~gp~l~G~l  287 (366)
                      ++..++.|++.+...+..-++....        .....+.+.+|      .+|..+ ||.++|.+
T Consensus        96 ~~~~~l~~~~~~~~~~~~~~l~~~~~~~~g~~~~~~~~~~r~~G------~lG~~i-g~~l~g~l  153 (418)
T TIGR00889        96 FPVLLANSLAYMPTIALTNSISYANLPQAGLDVVTDFPPIRVMG------TIGFIA-AMWAVSLL  153 (418)
T ss_pred             HHHHHHHHHHHccHHHHHHHHHHHHHhhcCCCchhcCCCeeeeh------hHHHHH-HHHHHHHh
Confidence            6666777776665555444332211        11112233333      356664 88888877

This family of proteins transports nucleosides at a high affinity. The transport mechanism is driven by proton motive force. This family includes nucleoside permease NupG and xanthosine permease from E.Coli.

>PRK15403 multidrug efflux system protein MdtM; Provisional

Probab=98.41  E-value=3.2e-05  Score=76.53  Aligned_cols=158  Identities=12%  Similarity=-0.013  Sum_probs=88.2

Q ss_pred             HHHHhhhhhHHHHHHHHHHhhhhHHHHHhcHHHHHHH-hCCChhHH--HHHHHHHHHhhhhhhhhhhh-hhhhhhccCch
Q 017754          129 LPQALMKADFLLLFFSLVLASGSGLTVIDNLGQICQS-LGYADTSI--YVSMISIWNFLGRVGGGYFS-EAIVRKFAYPR  204 (366)
Q Consensus       129 ~~~~l~~~~~~ll~~~~~~~~~~~~~~~~~l~~i~~~-~g~s~~~~--~vsl~~i~~~~g~~~~G~ls-D~~grr~~~~R  204 (366)
                      +++.++++.+|...+.+++.......+....|.+.++ +|++....  .......+..++..+.+.+. |+.++|.....
T Consensus       211 ~~~ll~~~~~~~~~l~~~~~~~~~~~~~~~~P~~l~~~~g~s~~~~gl~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~  290 (413)
T PRK15403        211 FRNVFRNRLFLTGAATLSLSYIPMMSWVAVSPVILIDAGGMTTSQFAWTQVPVFGAVIVANAIVARFVKDPTEPRFIWRA  290 (413)
T ss_pred             HHHHHcCHHHHHHHHHHHHHHHHHHHHHHhChHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHhccCCchhHHHHH
Confidence            4567889999988777766666656666778888876 48887655  22333444555555555433 33322211000


Q ss_pred             hHHHHHHHHHHHHHHHHHHhhhhH-HHHHHHHHHHHHHhhhhhhHHHHHHHhhC-CCchhhHHHHHHhhhhhhHHhhhhH
Q 017754          205 PVAMAVAQVVMAFALLYYAIGWPG-EIYVTTVLVGLSYGAHWAIVPAAASELFG-LKSFGALYNFLTLASPAGSLIFSGV  282 (366)
Q Consensus       205 ~~~~~~~~~~~~~~~~l~~~~~~~-~l~~~~~l~G~~~g~~~~~~~~~~se~f~-~~~~g~~~g~~~~~~~~G~~i~gp~  282 (366)
                      .....++.+++.++...  ..+.. ..+++.+++++|.+...+......  +.+ ....|++.++.+.....+..+ ++.
T Consensus       291 ~~~~~ig~~l~~~~~~~--~~~~~~~~~~~~~l~~~G~~~~~p~~~~~a--l~~~~~~~G~a~a~~~~~~~~~~~~-~~~  365 (413)
T PRK15403        291 VPIQLVGLALLIVGNLL--WPHVWLWSVLGTSLYAFGIGLIFPTLFRFT--LFSNNLPKGTVSASLNMVILMVMAV-SVE  365 (413)
T ss_pred             HHHHHHHHHHHHHHHHH--ccccHHHHHHHHHHHHHHHHHHhHHHHHHH--hccCCCCCcHHHHHHHHHHHHHHHH-HHH
Confidence            00111222222222111  11222 245666777777777665555322  222 223788888888887777775 888


Q ss_pred             HHHHHHhhh
Q 017754          283 IASGIYDYY  291 (366)
Q Consensus       283 l~G~l~d~~  291 (366)
                      +.|++++..
T Consensus       366 ~~g~~~~~~  374 (413)
T PRK15403        366 IGRWLWFNG  374 (413)
T ss_pred             HHHHHHHcC
Confidence            888887763

>PRK11462 putative transporter; Provisional

Probab=98.41  E-value=1.6e-05  Score=79.99  Aligned_cols=132  Identities=11%  Similarity=0.022  Sum_probs=88.9

Q ss_pred             hcHHHH-HHHhCCChhHH--HHHHHHHHHhhhhhhhhhhhhhhhhhccCchhHHHHHHHHHHHHHHHHHH-hhh----h-
Q 017754          157 DNLGQI-CQSLGYADTSI--YVSMISIWNFLGRVGGGYFSEAIVRKFAYPRPVAMAVAQVVMAFALLYYA-IGW----P-  227 (366)
Q Consensus       157 ~~l~~i-~~~~g~s~~~~--~vsl~~i~~~~g~~~~G~lsD~~grr~~~~R~~~~~~~~~~~~~~~~l~~-~~~----~-  227 (366)
                      .++..+ ....|.+...+  ...+.-+++.+.-|+.|++|||...|+..+||+++..+..+ ++++.++. .+.    . 
T Consensus        30 ~~l~~fyt~~~Gl~~~~~g~i~~~~ri~Dai~Dp~~G~~~D~t~~r~Gr~rp~il~g~i~~-~i~~~llf~~p~~s~~~~  108 (460)
T PRK11462         30 LYMMFFYTDIFGIPAGFVGTMFLVARALDAISDPCMGLLADRTRSRWGKFRPWVLFGALPF-GIVCVLAYSTPDLSMNGK  108 (460)
T ss_pred             HHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHHhhhheehhccCCCCCCCcchhHhHHHHHH-HHHHHHHHhCCCCCcchH
Confidence            334444 45579887765  77777899999999999999998777666677665544443 44443332 221    1 


Q ss_pred             -HHHHHHHHHHHHHHhhhhhhHHHHHHHhhC-CCchhhHHHHHHhhhhhhHHhhhhHHHHHHHhh
Q 017754          228 -GEIYVTTVLVGLSYGAHWAIVPAAASELFG-LKSFGALYNFLTLASPAGSLIFSGVIASGIYDY  290 (366)
Q Consensus       228 -~~l~~~~~l~G~~~g~~~~~~~~~~se~f~-~~~~g~~~g~~~~~~~~G~~i~gp~l~G~l~d~  290 (366)
                       ..+++..+++.+++........++.+|+-. .++|....++-..+..+|..+ ++.+...+...
T Consensus       109 ~~y~~~~~~~~~~~~t~~~ipy~al~~~lt~d~~eRt~l~s~r~~~~~iG~~~-~~~~~~plv~~  172 (460)
T PRK11462        109 MIYAAITYTLLTLLYTVVNIPYCALGGVITNDPTQRISLQSWRFVLATAGGML-STVLMMPLVNL  172 (460)
T ss_pred             HHHHHHHHHHHHHHHHHHhccHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHH
Confidence             123334445677777777777788888876 567999999999888888875 66665555443

>PRK10429 melibiose:sodium symporter; Provisional

Probab=98.38  E-value=1.3e-05  Score=80.86  Aligned_cols=132  Identities=11%  Similarity=0.112  Sum_probs=83.5

Q ss_pred             HHhcHHHHH-HHhCCChhHH--HHHHHHHHHhhhhhhhhhhhhhhhhhccCchhHHHHHHHHHHHHHHHHHHh-h--h-h
Q 017754          155 VIDNLGQIC-QSLGYADTSI--YVSMISIWNFLGRVGGGYFSEAIVRKFAYPRPVAMAVAQVVMAFALLYYAI-G--W-P  227 (366)
Q Consensus       155 ~~~~l~~i~-~~~g~s~~~~--~vsl~~i~~~~g~~~~G~lsD~~grr~~~~R~~~~~~~~~~~~~~~~l~~~-~--~-~  227 (366)
                      +..+++.+. +.+|.+...+  ...+.-+++.+..|+.|++|||...|+..+|+++ ..+.+.++++++++.. +  . .
T Consensus        25 ~~~~l~~yyt~v~Gls~~~vg~i~~i~ri~dai~dp~~G~lsD~t~sr~Grrrp~i-l~g~i~~~i~~~llf~~p~~~~~  103 (473)
T PRK10429         25 VYMYLMYYYTDVVGLSVGLVGTLFLVARIWDAINDPIMGWIVNNTRSRWGKFKPWI-LIGTLANSVVLFLLFSAHLFEGT  103 (473)
T ss_pred             HHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhhchheeehhcCCCCCCCcchhH-hhhhHHHHHHHHHHHcCCCCCcc
Confidence            334445554 4469987765  7788889999999999999997644444445554 4444555555444332 1  1 1


Q ss_pred             H---HHHHHHHHHHHHHhhhhhhHHHHHHHhh-CCCchhhHHHHHHhhhhhhHHhhhhHHHHHHH
Q 017754          228 G---EIYVTTVLVGLSYGAHWAIVPAAASELF-GLKSFGALYNFLTLASPAGSLIFSGVIASGIY  288 (366)
Q Consensus       228 ~---~l~~~~~l~G~~~g~~~~~~~~~~se~f-~~~~~g~~~g~~~~~~~~G~~i~gp~l~G~l~  288 (366)
                      .   .+++..++.++++........++.+|+- ..++|....++-.....+|+.+ .+.+...+.
T Consensus       104 ~~~~~~~~~~~l~~~~~t~~~ip~~al~~~lt~~~~eR~~l~~~~~~~~~ig~~~-~~~~~~~~~  167 (473)
T PRK10429        104 AQYVFVCVTYILWGMTYTIMDIPFWSLVPTLTLDKREREQLVPYPRFFASLAGFV-TAGFTLPFV  167 (473)
T ss_pred             HHHHHHHHHHHHHHHHHHHHcchHHhhhHHhCCCHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHH
Confidence            1   1223334556666666667778889987 4778999888877777777665 444444443

>PF13347 MFS_2: MFS/sugar transport protein

Probab=98.37  E-value=1.8e-06  Score=85.74  Aligned_cols=164  Identities=17%  Similarity=0.234  Sum_probs=109.7

Q ss_pred             HHHHHHHhCCChhHH--HHHHHHHHHhhhhhhhhhhhhhhhhhccCchhHHHHHHHHHHHHHHHHHHhhhh---------
Q 017754          159 LGQICQSLGYADTSI--YVSMISIWNFLGRVGGGYFSEAIVRKFAYPRPVAMAVAQVVMAFALLYYAIGWP---------  227 (366)
Q Consensus       159 l~~i~~~~g~s~~~~--~vsl~~i~~~~g~~~~G~lsD~~grr~~~~R~~~~~~~~~~~~~~~~l~~~~~~---------  227 (366)
                      ++.+.+.+|.+....  ...+..+++++-.|+.|++|||...|+..+|+ ++.++.++.++++.++....|         
T Consensus        25 ~~f~~~~~gl~~~~~g~i~~~~~i~dai~dp~~G~~sDr~~tr~Grrrp-~~l~g~i~~~~~~~llf~~~p~~~~~~~~~  103 (428)
T PF13347_consen   25 LYFYTDVLGLSPALAGLILLVGRIWDAITDPLIGYLSDRTRTRWGRRRP-WILIGAILLALSFFLLFSPPPAGLSFTAKL  103 (428)
T ss_pred             HHHHHHHcCCCHHHHHHHHHHHHHhhhhcCCcEEEEEeeecccccccce-EeehhhHHHHHHHHHhhccccchhhhhhHH
Confidence            334445579988765  67777899999999999999944333332233 235566666666665543211         


Q ss_pred             HHHHHHHHHHHHHHhhhhhhHHHHHHHhhCC-CchhhHHHHHHhhhhhhHHhhhhHHHHHHHhhhhhhhhhhhhhccCCC
Q 017754          228 GEIYVTTVLVGLSYGAHWAIVPAAASELFGL-KSFGALYNFLTLASPAGSLIFSGVIASGIYDYYAEKQAGLLWKYNGNM  306 (366)
Q Consensus       228 ~~l~~~~~l~G~~~g~~~~~~~~~~se~f~~-~~~g~~~g~~~~~~~~G~~i~gp~l~G~l~d~~~~~~~~~~~~~~~~~  306 (366)
                      ..+.+..+++.+++........++.+|+.+. ++|....+.-.....+|+.+ ...+.+.+.+..+..+.          
T Consensus       104 ~~~~~~~~l~~~~~t~~~i~~~al~~~lt~~~~~R~~l~~~~~~~~~~g~~l-~~~~~~~l~~~~g~~~~----------  172 (428)
T PF13347_consen  104 VWLFVFYILFDIAYTFVQIPYNALIPELTPDPDERTRLSSWRMIFSMIGSLL-ASFLAPILVSWFGGGDT----------  172 (428)
T ss_pred             HHHHHHHHHHHHhhhhccCchhhcCccccccHhhhhhHHHHHHHHHHHHHHH-HHHHhhhhhhhhccCcc----------
Confidence            1234445556667777667777888999874 57999999988888888875 56677777765542110          


Q ss_pred             CCcccCCCCCCcccCCcchHHHHHHHHHHHHHHHHHHHHHhhh
Q 017754          307 LPVSFRDQETPTCLGSICYSITCGIMAGLCIIAMVMSLIVVHR  349 (366)
Q Consensus       307 ~~~~~~~~~~~~c~g~~~~~~~f~i~~~~~~~~~~~~~~~~~~  349 (366)
                                     .+.|++..++.+++.+++.++.....++
T Consensus       173 ---------------~~~~~~~~~v~~iv~~v~~~i~~~~~ke  200 (428)
T PF13347_consen  173 ---------------SNGYRWMALVLAIVGLVFFLITFFFVKE  200 (428)
T ss_pred             ---------------chHHHHHHHHHHHHHHHHhhhhhheeee
Confidence                           0139999999888888877777766665

>PF00083 Sugar_tr: Sugar (and other) transporter; InterPro: IPR005828 Recent genome-sequencing data and a wealth of biochemical and molecular genetic investigations have revealed the occurrence of dozens of families of primary and secondary transporters

Probab=98.36  E-value=3.8e-10  Score=112.28  Aligned_cols=161  Identities=16%  Similarity=0.171  Sum_probs=106.0

Q ss_pred             HHhcHHHHHHHhCCChhHHHHHHHHHHHhhhhhhhhhhhhhhhhhccCchhHHHHHHHHHHHHHHHHHH------hhh--
Q 017754          155 VIDNLGQICQSLGYADTSIYVSMISIWNFLGRVGGGYFSEAIVRKFAYPRPVAMAVAQVVMAFALLYYA------IGW--  226 (366)
Q Consensus       155 ~~~~l~~i~~~~g~s~~~~~vsl~~i~~~~g~~~~G~lsD~~grr~~~~R~~~~~~~~~~~~~~~~l~~------~~~--  226 (366)
                      ...+.+++.+..|.+.......+..+...++.+++.++.||+|||+..      ..+..+++++.+.+.      ...  
T Consensus       272 ~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~GRr~~~------i~~~~~~~~~~~~~~~~~~~~~~~~~  345 (451)
T PF00083_consen  272 IFYYSPSIFENAGISNSFLATLILGLVNFLGTLLAIFLIDRFGRRKLL------IIGLLLMAICSLILGIIFFLGVSSSS  345 (451)
T ss_pred             cccccccccccccccccccccccccccccccccccccccccccccccc------cccccccccccccccccccccccccc
Confidence            445567777778877663344455567778888888999999998766      444444444333331      111  


Q ss_pred             --hHHHHHHHHHHHHHHh-hhhhhHHHHHHHhhCCCchhhHHHHHHhhhhhhHHhhhhHHHHHHHhhhhhhhhhhhhhcc
Q 017754          227 --PGEIYVTTVLVGLSYG-AHWAIVPAAASELFGLKSFGALYNFLTLASPAGSLIFSGVIASGIYDYYAEKQAGLLWKYN  303 (366)
Q Consensus       227 --~~~l~~~~~l~G~~~g-~~~~~~~~~~se~f~~~~~g~~~g~~~~~~~~G~~i~gp~l~G~l~d~~~~~~~~~~~~~~  303 (366)
                        .....+...+..++++ +..++.+.+++|+||++.|+++.++......+++.+ +|.+...+.+..+           
T Consensus       346 ~~~~~~i~~~~l~~~~~~~g~~~~~~~~~~ElfPt~~R~~~~~~~~~~~~i~~~i-~~~~~~~~~~~~~-----------  413 (451)
T PF00083_consen  346 WWSILSIVFLALFFAFFSLGWGPLPWIYTAELFPTKVRSTGIGLSYAVGRIGGFI-IPFLFPYLFNNLG-----------  413 (451)
T ss_pred             ccccccceeeeeccccccccccccccccccccccccccccccccccccccccccc-ccccccccccccc-----------
Confidence              1112222222222223 334555678899999999999999999999999986 7877777766554           


Q ss_pred             CCCCCcccCCCCCCcccCCcchHHHHHHHHHHHHHHHHHHHHHhhhchHHH
Q 017754          304 GNMLPVSFRDQETPTCLGSICYSITCGIMAGLCIIAMVMSLIVVHRTKSVY  354 (366)
Q Consensus       304 ~~~~~~~~~~~~~~~c~g~~~~~~~f~i~~~~~~~~~~~~~~~~~~~r~~~  354 (366)
                                           ....|.+.+++++++.+....+.++||.+.
T Consensus       414 ---------------------~~~~~~i~~~~~~i~~i~~~~~lpET~g~~  443 (451)
T PF00083_consen  414 ---------------------GWGVFLIFAGVCLIAIIFVYFFLPETKGKT  443 (451)
T ss_pred             ---------------------ccccchhhHHHHHHHHhheeEEEeeCCCCC
Confidence                                 244566777777777777777788887644

Two such families have been found to occur ubiquitously in all classifications of living organisms. These are the ATP-binding cassette (ABC) superfamily and the major facilitator superfamily (MFS), also called the uniporter-symporter-antiporter family. While ABC family permeases are in general multicomponent primary active transporters, capable of transporting both small molecules and macromolecules in response to ATP hydrolysis the MFS transporters are single-polypeptide secondary carriers capable only of transporting small solutes in response to chemiosmotic ion gradients. Although well over 100 families of transporters have now been recognised and classified, the ABC superfamily and MFS account for nearly half of the solute transporters encoded within the genomes of microorganisms. They are also prevalent in higher organisms. The importance of these two families of transport systems to living organisms can therefore not be overestimated []. The MFS was originally believed to function primarily in the uptake of sugars but subsequent studies revealed that drug efflux systems, Krebs cycle metabolites, organophosphate:phosphate exchangers, oligosaccharide:H1 symport permeases, and bacterial aromatic acid permeases were all members of the MFS. These observations led to the probability that the MFS is far more widespread in nature and far more diverse in function than had been thought previously. 17 subgroups of the MFS have been identified []. Evidence suggests that the MFS permeases arose by a tandem intragenic duplication event in the early prokaryotes. This event generated a 2-transmembrane-spanner (TMS) protein topology from a primordial 6-TMS unit. Surprisingly, all currently recognised MFS permeases retain the two six-TMS units within a single polypeptide chain, although in 3 of the 17 MFS families, an additional two TMSs are found []. Moreover, the well-conserved MFS specific motif between TMS2 and TMS3 and the related but less well conserved motif between TMS8 and TMS9 [] prove to be a characteristic of virtually all of the more than 300 MFS proteins identified.; GO: 0022857 transmembrane transporter activity, 0055085 transmembrane transport, 0016021 integral to membrane

>PF03209 PUCC: PUCC protein; InterPro: IPR004896 This protein is required for high-level transcription of the PUC operon

Probab=98.29  E-value=4.7e-05  Score=74.08  Aligned_cols=190  Identities=16%  Similarity=0.119  Sum_probs=122.7

Q ss_pred             HHHHhhhhhHHHHHHHHHHhhhhHHHHHhcHHHHH-HHhCCChhHH--HHHHHHHHHhhhhhhhhhhhhhhhhhccCchh
Q 017754          129 LPQALMKADFLLLFFSLVLASGSGLTVIDNLGQIC-QSLGYADTSI--YVSMISIWNFLGRVGGGYFSEAIVRKFAYPRP  205 (366)
Q Consensus       129 ~~~~l~~~~~~ll~~~~~~~~~~~~~~~~~l~~i~-~~~g~s~~~~--~vsl~~i~~~~g~~~~G~lsD~~grr~~~~R~  205 (366)
                      +++...+++...++...+.+..+..+-...+-+|. +-+|++..++  +..+...+..+|-.+.|++..+-..++   |.
T Consensus       201 ~~~~~~~~~a~~f~~fl~l~t~a~~~QD~iLEPygg~Vfgmsv~eTT~Lta~~~~G~L~G~~~~g~~l~~~~~~~---~~  277 (403)
T PF03209_consen  201 WRQVWASPQARRFFVFLFLGTLAFFMQDVILEPYGGEVFGMSVGETTRLTAFWGGGTLLGMLLAGFLLSRRLGKK---RT  277 (403)
T ss_pred             HHHHHhCCChhHHHHHHHHHHHHHHhhHHHcCCchhHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCch---HH
Confidence            34445556555555444444444333333343444 4578887665  888889998899999998766422221   21


Q ss_pred             HHHHHHHHHHHHHHHH--HH--hhhhHHHHHHHHHHHHHHhhhhhhHHHHHHHhhCCCchhhHHHHHHhhhhhhHHhhhh
Q 017754          206 VAMAVAQVVMAFALLY--YA--IGWPGEIYVTTVLVGLSYGAHWAIVPAAASELFGLKSFGALYNFLTLASPAGSLIFSG  281 (366)
Q Consensus       206 ~~~~~~~~~~~~~~~l--~~--~~~~~~l~~~~~l~G~~~g~~~~~~~~~~se~f~~~~~g~~~g~~~~~~~~G~~i~gp  281 (366)
                      .  ..+..+.++++.+  ++  ..+++.+....+++|++.|....-.-+...++-..++-|...|....+..++..+ +.
T Consensus       278 a--~~G~~~~~~~f~lii~a~~~~~~~~~~~~~~l~G~g~G~f~vgals~mM~lt~~~~aG~~mG~WGaaQA~A~Gl-g~  354 (403)
T PF03209_consen  278 A--ALGCLLGALAFALIILAGPLGSPWLFRPGVFLLGLGNGLFTVGALSLMMDLTSAGRAGLFMGAWGAAQAIARGL-GT  354 (403)
T ss_pred             H--HHHHHHHHHHHHHHHHHHhcccchHHHHHHHHHHHhhhHHHHHHHHHHHhCCCCcchhHHHHHHHHHHHHHHHH-HH
Confidence            1  2333333333333  22  2356678888999999999877777778888888889999999999999999985 88


Q ss_pred             HHHHHHHhhhhhhhhhhhhhccCCCCCcccCCCCCCcccCCcchHHHHHHHHHHHHHHHHHHHHH
Q 017754          282 VIASGIYDYYAEKQAGLLWKYNGNMLPVSFRDQETPTCLGSICYSITCGIMAGLCIIAMVMSLIV  346 (366)
Q Consensus       282 ~l~G~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~g~~~~~~~f~i~~~~~~~~~~~~~~~  346 (366)
                      .++|.+.|....-.+               +       .-...|..+|.+-++..+++..+...+
T Consensus       355 ~~GG~~~D~~~~~~~---------------~-------~~~~aY~~VF~lEa~ll~~a~~ll~~l  397 (403)
T PF03209_consen  355 FLGGALRDLVRALFG---------------N-------SPALAYGVVFALEAVLLLAALVLLGRL  397 (403)
T ss_pred             HHHHHHHHHHHHhcc---------------C-------CcchHHHHHHHHHHHHHHHHHHHHHHh
Confidence            999999997641110               0       011138999988877666666554433

It is an integral membrane protein. The family includes other proteins form Rhodobacter eg. bacteriochlorophyll synthase.

>PF00083 Sugar_tr: Sugar (and other) transporter; InterPro: IPR005828 Recent genome-sequencing data and a wealth of biochemical and molecular genetic investigations have revealed the occurrence of dozens of families of primary and secondary transporters

Probab=98.27  E-value=6.2e-09  Score=103.61  Aligned_cols=103  Identities=21%  Similarity=0.278  Sum_probs=88.2

Q ss_pred             HHHHHHHHHhhhhhhhhhhhhhhhhhccCchhHHHHHHHHHHHHHHHHHHh-h---hhHHHHHHHHHHHHHHhhhhhhHH
Q 017754          174 YVSMISIWNFLGRVGGGYFSEAIVRKFAYPRPVAMAVAQVVMAFALLYYAI-G---WPGEIYVTTVLVGLSYGAHWAIVP  249 (366)
Q Consensus       174 ~vsl~~i~~~~g~~~~G~lsD~~grr~~~~R~~~~~~~~~~~~~~~~l~~~-~---~~~~l~~~~~l~G~~~g~~~~~~~  249 (366)
                      ..+...++..+|.++.|+++||+|||+.+      .++.+++.++.++... .   +...+.+++++.|++.|+.....+
T Consensus        51 ~~~~~~~g~~~G~~~~g~~~d~~GRk~~~------~~~~~~~~i~~~~~~~~~~~~~~~~~~~~R~~~G~~~g~~~~~~~  124 (451)
T PF00083_consen   51 LTSSFFIGAIVGALIFGFLADRYGRKPAL------IISALLMIIGSILIAFAPSYNNFWMLLIGRFLIGFGIGGAYVVSP  124 (451)
T ss_pred             HHHHHHhhhcccccccccccccccccccc------ccccccccccccccccccccccccccccccccccccccccccccc
Confidence            77888899999999999999999999887      6777777777776653 3   466788899999999999999999


Q ss_pred             HHHHHhhCCCchhhHHHHHHhhhhhhHHhhhhHH
Q 017754          250 AAASELFGLKSFGALYNFLTLASPAGSLIFSGVI  283 (366)
Q Consensus       250 ~~~se~f~~~~~g~~~g~~~~~~~~G~~i~gp~l  283 (366)
                      .++.|..++++||....+......+|..+ +..+
T Consensus       125 ~~~~E~~~~~~R~~~~~~~~~~~~~G~~~-~~~~  157 (451)
T PF00083_consen  125 IYISEIAPPKHRGFLSSLFQLFWALGILL-ASLI  157 (451)
T ss_pred             ccccccccccccccccccccccccccccc-cccc
Confidence            99999999999999999999988888875 5443

Two such families have been found to occur ubiquitously in all classifications of living organisms. These are the ATP-binding cassette (ABC) superfamily and the major facilitator superfamily (MFS), also called the uniporter-symporter-antiporter family. While ABC family permeases are in general multicomponent primary active transporters, capable of transporting both small molecules and macromolecules in response to ATP hydrolysis the MFS transporters are single-polypeptide secondary carriers capable only of transporting small solutes in response to chemiosmotic ion gradients. Although well over 100 families of transporters have now been recognised and classified, the ABC superfamily and MFS account for nearly half of the solute transporters encoded within the genomes of microorganisms. They are also prevalent in higher organisms. The importance of these two families of transport systems to living organisms can therefore not be overestimated []. The MFS was originally believed to function primarily in the uptake of sugars but subsequent studies revealed that drug efflux systems, Krebs cycle metabolites, organophosphate:phosphate exchangers, oligosaccharide:H1 symport permeases, and bacterial aromatic acid permeases were all members of the MFS. These observations led to the probability that the MFS is far more widespread in nature and far more diverse in function than had been thought previously. 17 subgroups of the MFS have been identified []. Evidence suggests that the MFS permeases arose by a tandem intragenic duplication event in the early prokaryotes. This event generated a 2-transmembrane-spanner (TMS) protein topology from a primordial 6-TMS unit. Surprisingly, all currently recognised MFS permeases retain the two six-TMS units within a single polypeptide chain, although in 3 of the 17 MFS families, an additional two TMSs are found []. Moreover, the well-conserved MFS specific motif between TMS2 and TMS3 and the related but less well conserved motif between TMS8 and TMS9 [] prove to be a characteristic of virtually all of the more than 300 MFS proteins identified.; GO: 0022857 transmembrane transporter activity, 0055085 transmembrane transport, 0016021 integral to membrane

>TIGR00788 fbt folate/biopterin transporter

Probab=98.24  E-value=5.9e-06  Score=83.28  Aligned_cols=122  Identities=11%  Similarity=0.087  Sum_probs=86.3

Q ss_pred             HHhCCChhHH--HHHHHHHHHhhhhhhhhhhhhhhhhhccCchhHHHHHHHHHHHHHHHHHH---------h--hhhHHH
Q 017754          164 QSLGYADTSI--YVSMISIWNFLGRVGGGYFSEAIVRKFAYPRPVAMAVAQVVMAFALLYYA---------I--GWPGEI  230 (366)
Q Consensus       164 ~~~g~s~~~~--~vsl~~i~~~~g~~~~G~lsD~~grr~~~~R~~~~~~~~~~~~~~~~l~~---------~--~~~~~l  230 (366)
                      ..+|++....  .....+++..+|..+.+++.+|++.|+..      .++.++.+++.+...         .  .+...+
T Consensus       281 ~~lG~s~~~~G~~~~~~~v~~i~g~~~~~~~~~~~~~r~~l------~~~~~l~~~~~~~~~~l~~~~~~~~gi~~~~~~  354 (468)
T TIGR00788       281 QCLPGGPSFSGMSKVVGNLGSLCGVGGYDRFLKTFPYRLLF------GVTTLLYTLSSLFDLILVKRWNLAFGISDEVFV  354 (468)
T ss_pred             ccCCCCcchhhhHHHHHHHHHHHHHHHHHHHHhhCCHHHHH------HHHHHHHHHHHhCceeeeeccccccCCCCeeee
Confidence            3578887765  55556666666766666665555544333      555555555443321         0  111233


Q ss_pred             HHHHHHHHHHHhhhhhhHHHHHHHhhCCCchhhHHHHHHhhhhhhHHhhhhHHHHHHHhhhh
Q 017754          231 YVTTVLVGLSYGAHWAIVPAAASELFGLKSFGALYNFLTLASPAGSLIFSGVIASGIYDYYA  292 (366)
Q Consensus       231 ~~~~~l~G~~~g~~~~~~~~~~se~f~~~~~g~~~g~~~~~~~~G~~i~gp~l~G~l~d~~~  292 (366)
                      ....++.+++++..+......+++..|++..|+.+++.+...++|..+ ++.++|.+.+..+
T Consensus       355 ~~~~~l~~~~~g~~~~~~~~~~~~~~p~~~egt~~al~~s~~~lg~~v-~~~~gg~l~~~~g  415 (468)
T TIGR00788       355 LGDSIIAEVLAQLKFMPFLVLLARLCPSGCESSVFALLASILHLGSSV-SGFLGVLLMETIG  415 (468)
T ss_pred             eehhHHHHHHHHHHHccHHHHHHHhCCCCceehHHHHHHHHHHHHHHH-HHHHHHHHHHHcC
Confidence            445667788888888888889999999999999999999999999996 9999999998876

The only functionally characterized members of the family are from protozoa and include FT1, the major folate transporter in Leishmania, and BT1, the Leishmania biopterin/folate transporter. A related protein in Trypanosoma brucei, ESAGIO, shows weak folate/biopterin transport activity.

>PRK09848 glucuronide transporter; Provisional

Probab=98.23  E-value=6.8e-05  Score=74.82  Aligned_cols=115  Identities=15%  Similarity=0.192  Sum_probs=72.0

Q ss_pred             HHHHHHhCCChhHH--HHHHHHHHHhhhhhhhhhhhhhhhhhccCchhHHHHHHHHHHHHHHHHHHhh----h-hHH--H
Q 017754          160 GQICQSLGYADTSI--YVSMISIWNFLGRVGGGYFSEAIVRKFAYPRPVAMAVAQVVMAFALLYYAIG----W-PGE--I  230 (366)
Q Consensus       160 ~~i~~~~g~s~~~~--~vsl~~i~~~~g~~~~G~lsD~~grr~~~~R~~~~~~~~~~~~~~~~l~~~~----~-~~~--l  230 (366)
                      .++.+.+|++...+  ..++..++..+..+++|+++||.++|+..+|+++...+..++..+.+++...    . ...  .
T Consensus        33 ~y~~~~~gl~~~~~g~~~~~~~~~~~~~~~~~G~l~Dr~~~~~Gr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  112 (448)
T PRK09848         33 SYYTDVAGVGAAAAGTMLLLVRVFDAFADVFAGRVVDSVNTRWGKFRPFLLFGTAPLMIFSVLVFWVPTDWSHSSKVVYA  112 (448)
T ss_pred             HHHHHHcCCCHHHHHHHHHHHHHHHHHhhhhheeeeecCCCCCcCchHHHHHHHHHHHHHHHHHHhCcCCCCcchHHHHH
Confidence            34445579987765  7888899999999999999999988777666666555554444444433221    1 111  2


Q ss_pred             HHHHHHHHHHHhhhhhhHHHHHHHhhCC-CchhhHHHHHHhhhhh
Q 017754          231 YVTTVLVGLSYGAHWAIVPAAASELFGL-KSFGALYNFLTLASPA  274 (366)
Q Consensus       231 ~~~~~l~G~~~g~~~~~~~~~~se~f~~-~~~g~~~g~~~~~~~~  274 (366)
                      ++..++.+++++...+...++..++... ++|....+.-..+..+
T Consensus       113 ~~~~~~~~~~~~~~~~~~~al~~~~~~~~~~r~~~~~~r~~~~~~  157 (448)
T PRK09848        113 YLTYMGLGLCYSLVNIPYGSLATAMTQQPQSRARLGAARGIAASL  157 (448)
T ss_pred             HHHHHHHHHHHHHhcccHhhhhhhhcCCHHHHHHHHHHHHHHHHH
Confidence            3334556777776666556666666544 4577665554444333

>PF05631 DUF791: Protein of unknown function (DUF791); InterPro: IPR008509 This family consists of several eukaryotic proteins of unknown function

Probab=98.21  E-value=0.00011  Score=70.32  Aligned_cols=124  Identities=15%  Similarity=0.162  Sum_probs=80.3

Q ss_pred             HHHHhCCChhHH--HHHHHHHHHhhhhhhhhhhhhhhhhhccCchhHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHH
Q 017754          162 ICQSLGYADTSI--YVSMISIWNFLGRVGGGYFSEAIVRKFAYPRPVAMAVAQVVMAFALLYYAIGWPGEIYVTTVLVGL  239 (366)
Q Consensus       162 i~~~~g~s~~~~--~vsl~~i~~~~g~~~~G~lsD~~grr~~~~R~~~~~~~~~~~~~~~~l~~~~~~~~l~~~~~l~G~  239 (366)
                      +.++.|++..++  +...-...+.+..++.|.++||+|||+..      .+..++.+++++.-...+...+++++++-|+
T Consensus        60 LY~~yg~~~~qIa~Lf~~Gf~Ss~i~g~~~G~laD~~Grk~~c------l~~cily~~scl~k~~~~~~~L~~GRvlgGi  133 (354)
T PF05631_consen   60 LYESYGFSEHQIAILFVAGFASSAIFGTFVGSLADRYGRKKAC------LLFCILYSLSCLTKHSSNYPVLLLGRVLGGI  133 (354)
T ss_pred             HHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCchHHH------HHHHHHHHHHHHHHhccccHHHHHHHHHHHH
Confidence            346789987776  33333445566778889999999998765      5555666666655556677889999999999


Q ss_pred             HHhhhhhhHHH-HHHHh----hCCCchhhHHHHHH-hhhhhhHHhhhhHHHHHHHhhhh
Q 017754          240 SYGAHWAIVPA-AASEL----FGLKSFGALYNFLT-LASPAGSLIFSGVIASGIYDYYA  292 (366)
Q Consensus       240 ~~g~~~~~~~~-~~se~----f~~~~~g~~~g~~~-~~~~~G~~i~gp~l~G~l~d~~~  292 (366)
                      +....++..-+ ++.|.    |+.+..+..++.+. ..+.+-+. .+++++-++.|..+
T Consensus       134 aTSLLfS~FEsW~V~Eh~~~g~~~~~L~~tF~~~tf~~n~~vAI-~aGv~a~~l~~~~~  191 (354)
T PF05631_consen  134 ATSLLFSAFESWMVHEHNKRGFPQEWLSDTFSLATFFGNGVVAI-GAGVVANVLADWFG  191 (354)
T ss_pred             HHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHhHHHHH-HHhHHHHHHHHHhC
Confidence            98888877766 44554    33333444555444 33333334 35566666666554

>PRK10207 dipeptide/tripeptide permease B; Provisional

Probab=98.21  E-value=0.00019  Score=72.84  Aligned_cols=113  Identities=15%  Similarity=0.091  Sum_probs=81.5

Q ss_pred             HHHHHHHHHhhhhhhhhhhhhhhhhhccCc-hhHHHHHHHHHHHHHHHHH-------Hh----hhhHHHHHHHHHHHHHH
Q 017754          174 YVSMISIWNFLGRVGGGYFSEAIVRKFAYP-RPVAMAVAQVVMAFALLYY-------AI----GWPGEIYVTTVLVGLSY  241 (366)
Q Consensus       174 ~vsl~~i~~~~g~~~~G~lsD~~grr~~~~-R~~~~~~~~~~~~~~~~l~-------~~----~~~~~l~~~~~l~G~~~  241 (366)
                      +.++..++..+..++.|++.||+++|+.-+ .+.-+.+++++.+++++.+       ..    .+.+.+....++.|+|.
T Consensus       314 ~~~~n~~~iii~~pl~~~l~~rl~~r~~~~~~~~k~~~G~~l~~~~~~~~~~~~~~~~~~~~~~s~~~~i~~~~l~g~Ge  393 (489)
T PRK10207        314 FQALNPFWVVVASPILAGIYTHLGSKGKDLSMPMKFTLGMFLCSLGFLTAAAAGMWFADAQGLTSPWFIVLVYLFQSLGE  393 (489)
T ss_pred             HHhHhHHHHHHHHHHHHHHHHHHhhCCCCCCcHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCccCHHHHHHHHHHHHHHH
Confidence            555566677678888899999999886422 2223455666666555422       11    12234556677889999


Q ss_pred             hhhhhhHHHHHHHhhCCCchhhHHHHHHhhhhhhHHhhhhHHHHHH
Q 017754          242 GAHWAIVPAAASELFGLKSFGALYNFLTLASPAGSLIFSGVIASGI  287 (366)
Q Consensus       242 g~~~~~~~~~~se~f~~~~~g~~~g~~~~~~~~G~~i~gp~l~G~l  287 (366)
                      +...+...+.+.+..|++..|.+.|+.++...+|+.+ |..+++..
T Consensus       394 ~~~~~~g~~~~~~~aP~~~~g~~~g~~~l~~~ig~~l-g~~l~~~~  438 (489)
T PRK10207        394 LFISALGLAMIAALVPQHLMGFILGMWFLTQAAAFLL-GGYVATFT  438 (489)
T ss_pred             HHHhHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHH-HHHHHHHh
Confidence            8888888889999999999999999999999999996 77666654

>TIGR01301 GPH_sucrose GPH family sucrose/H+ symporter

Probab=98.21  E-value=8.2e-05  Score=74.95  Aligned_cols=180  Identities=12%  Similarity=0.078  Sum_probs=112.4

Q ss_pred             hhHHHHHHHHHHhhhhHHHHHhcHHH-HHHH-hCCCh--------h---HH-HHHHHHHHHhhhhhhhhhhhhhhhhhcc
Q 017754          136 ADFLLLFFSLVLASGSGLTVIDNLGQ-ICQS-LGYAD--------T---SI-YVSMISIWNFLGRVGGGYFSEAIVRKFA  201 (366)
Q Consensus       136 ~~~~ll~~~~~~~~~~~~~~~~~l~~-i~~~-~g~s~--------~---~~-~vsl~~i~~~~g~~~~G~lsD~~grr~~  201 (366)
                      +.+|.+++..++.+.+...+..+... +.++ ++-++        .   .. ...+.++.+.+..++.-++.+++|+   
T Consensus       258 ~~m~~l~~vqffsW~a~f~~~~y~T~~vg~~v~~~~~~~~~~y~~gvr~G~~~l~~~s~~~~i~s~~l~~l~~~~g~---  334 (477)
T TIGR01301       258 RPVWILLLVTCLNWIAWFPFILFDTDWMGREVYGGSVNQGAKYDDGVRAGAFGLMLNSVVLGITSIGMEKLCRGWGA---  334 (477)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHcCCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc---
Confidence            46788887777777766655444333 3333 33221        1   01 2223333333333444445555542   


Q ss_pred             CchhHHHHHHHHHHHHHHHHHH-hhh---------------------hHHHHHHHHHHHHHHhhhhhhHHHHHHHhhCC-
Q 017754          202 YPRPVAMAVAQVVMAFALLYYA-IGW---------------------PGEIYVTTVLVGLSYGAHWAIVPAAASELFGL-  258 (366)
Q Consensus       202 ~~R~~~~~~~~~~~~~~~~l~~-~~~---------------------~~~l~~~~~l~G~~~g~~~~~~~~~~se~f~~-  258 (366)
                        |+....++.++.+++++... ..+                     ....++...++|+..+...++-++++++.-+. 
T Consensus       335 --~k~~~~~s~~~~~~~l~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~Gi~~A~~~siPfal~s~~~~~~  412 (477)
T TIGR01301       335 --GKRLWGIVNIILAICLAATVLVTYVAKNSRYYDGDGESLPPPTGIKASALIVFAILGIPLAITYSIPFALASIRSSNL  412 (477)
T ss_pred             --chhHHHHHHHHHHHHHHHHHHHHhhhhccccccccccccCcchhhHHHHHHHHHHhhHHHHHHHHHhHHHHHHHcccc
Confidence              12222566666666555543 111                     14456667778999999889989999999984 


Q ss_pred             -CchhhHHHHHHhhhhhhHHhhhhHHHHHHHhhhhhhhhhhhhhccCCCCCcccCCCCCCcccCCcchHHHHHHHHHHHH
Q 017754          259 -KSFGALYNFLTLASPAGSLIFSGVIASGIYDYYAEKQAGLLWKYNGNMLPVSFRDQETPTCLGSICYSITCGIMAGLCI  337 (366)
Q Consensus       259 -~~~g~~~g~~~~~~~~G~~i~gp~l~G~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~g~~~~~~~f~i~~~~~~  337 (366)
                       ++.|...|++|++..+...+ ..+..|.+.+..+.                              .-.+++.+.++..+
T Consensus       413 ~~~~G~~mgilN~~I~lpQii-~sl~~g~~~~~~g~------------------------------~~~~~~~~~gv~~~  461 (477)
T TIGR01301       413 GAGQGLSMGVLNLAIVIPQII-VSLGSGPWDQLFGG------------------------------GNLPAFVVGAVAAF  461 (477)
T ss_pred             CCCCcchhhHHHHHHHHHHHH-HHHHHHHHHHHcCC------------------------------CCeeHHHHHHHHHH
Confidence             56799999999999999987 56677776655551                              14567778888888


Q ss_pred             HHHHHHHHHhhhch
Q 017754          338 IAMVMSLIVVHRTK  351 (366)
Q Consensus       338 ~~~~~~~~~~~~~r  351 (366)
                      +++++++++.+|.+
T Consensus       462 ~aa~~~~~~~~~~~  475 (477)
T TIGR01301       462 VSGLLALILLPRPR  475 (477)
T ss_pred             HHHHHHHHhCCCCC
Confidence            88888888777654

This model represents sucrose/proton symporters, found in plants, from the Glycoside-Pentoside-Hexuronide (GPH)/cation symporter family. These proteins are predicted to have 12 transmembrane domains. Members may export sucrose (e.g. SUT1, SUT4) from green parts to the phloem for long-distance transport or import sucrose (e.g SUT2) to sucrose sinks such as the tap root of the carrot.

>PRK09584 tppB putative tripeptide transporter permease; Reviewed

Probab=98.17  E-value=0.00021  Score=72.66  Aligned_cols=153  Identities=15%  Similarity=0.130  Sum_probs=101.2

Q ss_pred             HHHHHHHHHhhhhhhhhhhhhhhhhhccCchhHHHHHHHHHHHHHHHHHHhhh----------hHHHHHHHHHHHHHHhh
Q 017754          174 YVSMISIWNFLGRVGGGYFSEAIVRKFAYPRPVAMAVAQVVMAFALLYYAIGW----------PGEIYVTTVLVGLSYGA  243 (366)
Q Consensus       174 ~vsl~~i~~~~g~~~~G~lsD~~grr~~~~R~~~~~~~~~~~~~~~~l~~~~~----------~~~l~~~~~l~G~~~g~  243 (366)
                      +.++..+...+..++.+++-.|.++|..  .+..+.+++++++++++.+....          ...+....++.|+|-+.
T Consensus       321 ~~s~n~i~iil~~p~~~~~~~~l~~r~~--~~~~~~~G~~l~~l~f~~l~~~~~~~~~~~~vs~~~~~~~~~l~~~ge~~  398 (500)
T PRK09584        321 YQALNPFWIMIGSPILAAIYNKMGDRLP--MPHKFAIGMVLCSGAFLVLPLGAKFANDAGIVSVNWLIASYGLQSIGELM  398 (500)
T ss_pred             HHHHhHHHHHHHHHHHHHHHHHhCcCCC--cHHHHHHHHHHHHHHHHHHHHHHHhcCCCCccCHHHHHHHHHHHHHHHHH
Confidence            5666666666777777666667666532  34556788888888877755321          23566778889999999


Q ss_pred             hhhhHHHHHHHhhCCCchhhHHHHHHhhhhhhHHhhhhHHHHHHHhhhhhhhhhhhhhccCCCCCcccCCCCCCcccCC-
Q 017754          244 HWAIVPAAASELFGLKSFGALYNFLTLASPAGSLIFSGVIASGIYDYYAEKQAGLLWKYNGNMLPVSFRDQETPTCLGS-  322 (366)
Q Consensus       244 ~~~~~~~~~se~f~~~~~g~~~g~~~~~~~~G~~i~gp~l~G~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~g~-  322 (366)
                      ..+...+++.+..|++.+|..+|...++..+|+.+ ++.+.+........                       ...... 
T Consensus       399 ~~p~g~s~~~~~aP~~~rg~~~g~~~l~~a~g~~~-~g~~~~~~~~~~~~-----------------------~~~~~~~  454 (500)
T PRK09584        399 ISGLGLAMVAQLVPQRLMGFIMGSWFLTTAGAALI-AGYVANLMAVPDNV-----------------------TDPLMSL  454 (500)
T ss_pred             HhHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHH-HHHHHHHhcccccc-----------------------ccchhhh
Confidence            99999999999999999999999888887777774 55555433211000                       000000 


Q ss_pred             cchHHHHHHHHHHHHHHHHHHHHHhhhchH
Q 017754          323 ICYSITCGIMAGLCIIAMVMSLIVVHRTKS  352 (366)
Q Consensus       323 ~~~~~~f~i~~~~~~~~~~~~~~~~~~~r~  352 (366)
                      ..|.+.|...++++++.+++.+++.++.+|
T Consensus       455 ~~~~~~f~~~~~~~~~~a~~~~~~~~~~~k  484 (500)
T PRK09584        455 EVYGRVFLQIGIATAVIAVLMLLTAPKLNR  484 (500)
T ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            027888888887777665555554444433

>PF03825 Nuc_H_symport: Nucleoside H+ symporter

Probab=98.16  E-value=7.6e-05  Score=73.70  Aligned_cols=116  Identities=17%  Similarity=0.193  Sum_probs=76.3

Q ss_pred             HHhcHHHHHHHhCCChhHH--HHHHHHHHHhhhhhhhhhhhhhhhhhccCchhHHHHHHHHHHHHHHHHHH-hhhhHHHH
Q 017754          155 VIDNLGQICQSLGYADTSI--YVSMISIWNFLGRVGGGYFSEAIVRKFAYPRPVAMAVAQVVMAFALLYYA-IGWPGEIY  231 (366)
Q Consensus       155 ~~~~l~~i~~~~g~s~~~~--~vsl~~i~~~~g~~~~G~lsD~~grr~~~~R~~~~~~~~~~~~~~~~l~~-~~~~~~l~  231 (366)
                      +...++.+.++.|++..++  ..++..+..+++.+++|+++||.++++..     +.+..++.++..+... ..+...++
T Consensus        21 ~~p~~~~~L~~~G~s~~qIG~l~a~~~~~~i~~~~~~g~~aDr~~~~~~~-----l~~~~l~~~~~~~~~~~~~~f~~~~   95 (400)
T PF03825_consen   21 FLPYLPLYLESRGFSGTQIGILLAVGPLARIVSPPFWGAIADRFGSAKRI-----LALLSLLSALALLLLAFSSSFWWLF   95 (400)
T ss_pred             HHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhHHHH-----HHHHHHHHHHHHHHHHHhccHHHHH
Confidence            4456788999999998887  88899999999999999999998654332     2344444444333333 33445556


Q ss_pred             HHHHHHHHHHhhhhhhHHHHHHHhhCCCchhhHHHHHHhhhhhhHH
Q 017754          232 VTTVLVGLSYGAHWAIVPAAASELFGLKSFGALYNFLTLASPAGSL  277 (366)
Q Consensus       232 ~~~~l~G~~~g~~~~~~~~~~se~f~~~~~g~~~g~~~~~~~~G~~  277 (366)
                      +..+++.+++....++.-++.-+..+  +.+.-||-+-+.+.+|=.
T Consensus        96 ~~~~l~~~~~~p~~pl~dsi~~~~~~--~~~~~YG~iRlwGSiGf~  139 (400)
T PF03825_consen   96 VIMLLFSFFFSPTMPLSDSIALSYLG--DRGKDYGRIRLWGSIGFI  139 (400)
T ss_pred             HHHHHHHHHHccHHHHHHHHHHHHcc--cccCCCCcchhhhhHHHH
Confidence            66666777777777777777766654  334444444444444444

>KOG0254 consensus Predicted transporter (major facilitator superfamily) [General function prediction only]

Probab=98.12  E-value=3.8e-05  Score=78.28  Aligned_cols=181  Identities=17%  Similarity=0.165  Sum_probs=110.2

Q ss_pred             hhhHHHHHHHHHHhhhhHHHHHhcHHHHHHHhCCChh-HHHHHHHHHHHhhhhhhhhhhhhhhhhhccCchhHHHHHHHH
Q 017754          135 KADFLLLFFSLVLASGSGLTVIDNLGQICQSLGYADT-SIYVSMISIWNFLGRVGGGYFSEAIVRKFAYPRPVAMAVAQV  213 (366)
Q Consensus       135 ~~~~~ll~~~~~~~~~~~~~~~~~l~~i~~~~g~s~~-~~~vsl~~i~~~~g~~~~G~lsD~~grr~~~~R~~~~~~~~~  213 (366)
                      ++.++...+..+..........++.+++.+..|.+.. .....+.++.++++..++.++.||+|||+..      ..+..
T Consensus       294 ~~~~i~~~l~~fqq~tG~~~~~~Y~~~if~~~g~~~~~~~~~~~~~~v~~~~t~~~~~lvd~~gRr~ll------l~s~~  367 (513)
T KOG0254|consen  294 KRLIIGLLLQLFQQLTGINYVFYYSTTIFKSAGLKSDTFLASIILGVVNFLGTLVATYLVDRFGRRKLL------LFGAA  367 (513)
T ss_pred             HHHHHHHHHHHHHHHhCCceEEeehHHHHHhcCCCCchHHHHHHHHHHHHHHHHHHHHHHHHhccHHHH------HHhHH
Confidence            3344444444444444444566788899999998755 4456666777888888889999999998765      56666


Q ss_pred             HHHHHHHHHHhh-----h--------hHHHHHHHHH-HHHHHhhhhhhHHHHHHHhhCCCchhhHHHHHHhhhhhhHHhh
Q 017754          214 VMAFALLYYAIG-----W--------PGEIYVTTVL-VGLSYGAHWAIVPAAASELFGLKSFGALYNFLTLASPAGSLIF  279 (366)
Q Consensus       214 ~~~~~~~l~~~~-----~--------~~~l~~~~~l-~G~~~g~~~~~~~~~~se~f~~~~~g~~~g~~~~~~~~G~~i~  279 (366)
                      .+.++.++++..     .        .....+...+ +.....+..++.+.+.+|.||.+.|+.+.++....+.+.+++.
T Consensus       368 ~m~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~f~~g~g~v~w~~~sEifp~~~r~~~~s~~~~~n~~~~~~v  447 (513)
T KOG0254|consen  368 GMSICLVILAVVGVFALYYPNSSKGAGWLAIVFLCLFIFSFAIGWGPVPWVIVSEIFPLRLRSKGASLAVAVNWLWNFLI  447 (513)
T ss_pred             HHHHHHHHHHHHHHHhccCCCcccchhHHHHHHHHHHHHHHhcccccchhhhhhccCcHhHHhhhHHHHHHHHHHHHHHH
Confidence            666665554411     0        0111122222 2222223345556688999999999999999888777666642


Q ss_pred             hhHHHHHHHhhhhhhhhhhhhhccCCCCCcccCCCCCCcccCCcchHHHHHHHHHHHHHHHH-HHHHHhhhchHHH
Q 017754          280 SGVIASGIYDYYAEKQAGLLWKYNGNMLPVSFRDQETPTCLGSICYSITCGIMAGLCIIAMV-MSLIVVHRTKSVY  354 (366)
Q Consensus       280 gp~l~G~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~g~~~~~~~f~i~~~~~~~~~~-~~~~~~~~~r~~~  354 (366)
                           ...+.......                            .....|...++++.+..+ ...++.+++|.+.
T Consensus       448 -----~~~~~~~~~~~----------------------------~~~~~f~~f~~~~~~~~~~fv~~~~pETkg~s  490 (513)
T KOG0254|consen  448 -----SFFFPFITEAL----------------------------GIGGTFGYFGGICLLSLIIFVFFFVPETKGLT  490 (513)
T ss_pred             -----HHHHHHHHHhc----------------------------cccchHHHHHHHHHHHHHHHheEEcccCCCCc
Confidence                 22222221000                            024566777777777766 5667777877644

>KOG3762 consensus Predicted transporter [General function prediction only]

Probab=98.07  E-value=3.3e-05  Score=77.12  Aligned_cols=176  Identities=19%  Similarity=0.208  Sum_probs=117.1

Q ss_pred             HHhhhhhHHHHH-HHHHHhhhhHHHHHhcHHHHHHHhCCChhHH-HHHHH-HHHHhhhhhhhhhhhhhhhhhccCchhHH
Q 017754          131 QALMKADFLLLF-FSLVLASGSGLTVIDNLGQICQSLGYADTSI-YVSMI-SIWNFLGRVGGGYFSEAIVRKFAYPRPVA  207 (366)
Q Consensus       131 ~~l~~~~~~ll~-~~~~~~~~~~~~~~~~l~~i~~~~g~s~~~~-~vsl~-~i~~~~g~~~~G~lsD~~grr~~~~R~~~  207 (366)
                      +++.+++..+++ ++.+++.+.++ +.+++=-.+++.|-.+.-. .++.. ..+-++.-++.+++.+++|+-+.+     
T Consensus       366 ~~~~s~~~llff~~av~mG~g~~l-v~tFLfWHled~~~~~~LfGv~~a~~~~gEI~~~ffs~klI~kiGHv~v~-----  439 (618)
T KOG3762|consen  366 KVFASPHILLFFFVAVVMGAGVGL-VFTFLFWHLEDLGGIKTLFGVVSALCHAGEILFYFFSFKLIEKIGHVNVM-----  439 (618)
T ss_pred             HHhcCCCEEehhHHHHHHHHHHHH-HHHHHHHHHhhcCCcceeeeehhhhhccchHHHHHHHHHHHHHhccccee-----
Confidence            344555444333 33333333333 3344545667776332211 22222 223344455677888888887665     


Q ss_pred             HHHHHHHHHHHHHHHH-hhhhHHHHHHHHHHHHHHhhhhhhHHHHHHHhhCCCchhhHHHHHHh-hhhhhHHhhhhHHHH
Q 017754          208 MAVAQVVMAFALLYYA-IGWPGEIYVTTVLVGLSYGAHWAIVPAAASELFGLKSFGALYNFLTL-ASPAGSLIFSGVIAS  285 (366)
Q Consensus       208 ~~~~~~~~~~~~~l~~-~~~~~~l~~~~~l~G~~~g~~~~~~~~~~se~f~~~~~g~~~g~~~~-~~~~G~~i~gp~l~G  285 (366)
                       ..++....+=++.+. ..+++..+..=++.|+..+..|+.+.++++...|++-++++.+++.. .-.+|--+ |.+|+|
T Consensus       440 -~lgLa~~~~Rf~~~S~L~n~W~vLPieilqgit~aliWaa~~sY~s~vaPp~l~at~Q~l~~g~f~GlG~g~-GslIGG  517 (618)
T KOG3762|consen  440 -YLGLACNVGRFLYYSYLQNPWMVLPIEILQGITHALIWAAIISYASHVAPPGLRATAQGLLQGIFHGLGKGL-GSLIGG  517 (618)
T ss_pred             -eehhhHHHHHHHHHHHhcCchheeeHHHHHHHHHHHHHHHHHHHHHhhCCCcchHHHHHHHHHHhcccCcch-hhhhhh
Confidence             566666555555555 56777777788999999999999999999999999999999998754 45677774 888899


Q ss_pred             HHHhhhhhhhhhhhhhccCCCCCcccCCCCCCcccCCcchHHHHHHHHHHHHHHHHHHHHH
Q 017754          286 GIYDYYAEKQAGLLWKYNGNMLPVSFRDQETPTCLGSICYSITCGIMAGLCIIAMVMSLIV  346 (366)
Q Consensus       286 ~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~g~~~~~~~f~i~~~~~~~~~~~~~~~  346 (366)
                      .+..+.+                                -+.+|.+.++.|++.++..+.+
T Consensus       518 ~~v~~fg--------------------------------~~ttf~~~giAcl~~l~~~~~i  546 (618)
T KOG3762|consen  518 FVVERFG--------------------------------ARTTFRIFGIACLVTLALFISI  546 (618)
T ss_pred             hhheeeh--------------------------------hHHHHHHHHHHHHHHHHHHHHh
Confidence            9988877                                5778888887777766554443

>PF03209 PUCC: PUCC protein; InterPro: IPR004896 This protein is required for high-level transcription of the PUC operon

Probab=98.07  E-value=0.00012  Score=71.25  Aligned_cols=128  Identities=16%  Similarity=0.071  Sum_probs=90.8

Q ss_pred             HHHhCCChhHH--HHHHHHHHHhhhhhhhhhhhhhhhhhccCchhHHHHHHHHHHHHHHHHHH-----hhh--------h
Q 017754          163 CQSLGYADTSI--YVSMISIWNFLGRVGGGYFSEAIVRKFAYPRPVAMAVAQVVMAFALLYYA-----IGW--------P  227 (366)
Q Consensus       163 ~~~~g~s~~~~--~vsl~~i~~~~g~~~~G~lsD~~grr~~~~R~~~~~~~~~~~~~~~~l~~-----~~~--------~  227 (366)
                      ..+++.+..-.  .+++..+... .|+.+|+.||+...-..++|..++..+.++.+.+..+..     ...        .
T Consensus         7 IvEL~vpA~lv~~lval~~~~ap-~R~~~G~~SD~~~s~~G~rRtPyI~~G~~~~~~g~~~ap~a~~~l~~~~~~~~~~~   85 (403)
T PF03209_consen    7 IVELGVPAWLVALLVALHYLVAP-LRVWFGHRSDTHPSILGWRRTPYIWGGTLLQAGGLAIAPFALLLLAESGQQSSGPF   85 (403)
T ss_pred             HHHhccHHHHHHHHHHHHHHHHH-HHHHhccccccCcccCcCCchhhhHHHHHHHHHHHHHHHHHHHHHccccccccccc
Confidence            34566654332  5666665544 699999999998744455565566666666555444322     111        1


Q ss_pred             --H--HHHHHHHHHHHHHhhhhhhHHHHHHHhhCCCchhhHHHHHHhhhhhhHHhhhhHHHHHHHhhhh
Q 017754          228 --G--EIYVTTVLVGLSYGAHWAIVPAAASELFGLKSFGALYNFLTLASPAGSLIFSGVIASGIYDYYA  292 (366)
Q Consensus       228 --~--~l~~~~~l~G~~~g~~~~~~~~~~se~f~~~~~g~~~g~~~~~~~~G~~i~gp~l~G~l~d~~~  292 (366)
                        +  ...+...++|+|.+...+...+.++|.-++++|+...+++....-+|..+ +.++.|.+.|.+.
T Consensus        86 ~~g~~~a~l~F~l~G~G~~~s~T~~lALl~D~~~e~~R~~~v~ivw~Mli~G~iv-~ai~~g~lL~~~s  153 (403)
T PF03209_consen   86 WLGLALAALAFLLYGLGVHASGTSFLALLADLAPEERRPRVVAIVWVMLIVGIIV-SAIVFGRLLDPFS  153 (403)
T ss_pred             HHHHHHHHHHHHHHHhhHhHhHHHHHHHHHhcCCHhhhhhhHHHHHHHHHHHHHH-HHHHHHHHccccC
Confidence              1  23345567788888877888899999999999999999999998888886 8999998888765

It is an integral membrane protein. The family includes other proteins form Rhodobacter eg. bacteriochlorophyll synthase.

>KOG2563 consensus Permease of the major facilitator superfamily [General function prediction only]

Probab=98.05  E-value=4e-05  Score=75.13  Aligned_cols=157  Identities=14%  Similarity=0.104  Sum_probs=101.0

Q ss_pred             CCHHHHhhhhhHHHHHHHHHHhhhhHHHHHhcHHHHHHHhCCChhHH--HHHHHHHHHhhhhhhhhhhhhhhhhhccCch
Q 017754          127 FTLPQALMKADFLLLFFSLVLASGSGLTVIDNLGQICQSLGYADTSI--YVSMISIWNFLGRVGGGYFSEAIVRKFAYPR  204 (366)
Q Consensus       127 ~~~~~~l~~~~~~ll~~~~~~~~~~~~~~~~~l~~i~~~~g~s~~~~--~vsl~~i~~~~g~~~~G~lsD~~grr~~~~R  204 (366)
                      .++++.+++.+|.++.+++..+.+........+-+.+..-||+...+  ...+..+++.+|.++.|.+.||...-+..  
T Consensus       257 ~si~~~~~n~~F~il~~~ygi~~g~F~~l~~~l~~~l~~sgY~~~~aG~ig~l~iv~Gmlga~~~gii~Dktk~fk~~--  334 (480)
T KOG2563|consen  257 KSIKSCFKNRQFIILAICYGIGLGLFNSLSTLLNLALCPSGYEGVFAGYIGALMIVAGMLGALASGIIADKTKKFKLT--  334 (480)
T ss_pred             HHHHHHHcCccHHHHHHHHhhhHHHHHHHHHHhhhccccccCCccccchhHHHHHHHHHHHHHHHHhhhhhhhhHHHH--
Confidence            35778899999999988887777766666665555556668885333  66667778899999999999998543322  


Q ss_pred             hHHHHHHHHHHHHH-HHHHHh----hhhHHHHHHHHHHHHHHhhhhhhHHHHHHHhhCCCchhhHHHHHHhhhhhhHHhh
Q 017754          205 PVAMAVAQVVMAFA-LLYYAI----GWPGEIYVTTVLVGLSYGAHWAIVPAAASELFGLKSFGALYNFLTLASPAGSLIF  279 (366)
Q Consensus       205 ~~~~~~~~~~~~~~-~~l~~~----~~~~~l~~~~~l~G~~~g~~~~~~~~~~se~f~~~~~g~~~g~~~~~~~~G~~i~  279 (366)
                         +.+......++ ..++..    .....++....+.|++.-+..++..-+..|.--+..=++..|++++.+.+-+.++
T Consensus       335 ---~~v~~~~~~v~~~~l~~~t~~~~~~viv~~t~~~~g~~~~~~~Pig~ElgvE~TyPv~E~tSsGll~~~gq~f~~~~  411 (480)
T KOG2563|consen  335 ---TLVLYLFALVGTLMLLTCTLFLGDSVIVFTTCGLLGFFGTGYLPIGFELGVETTYPVAEGTSSGLLNLSGQIFGVIL  411 (480)
T ss_pred             ---HHHHHHHHHHHHHHHHHhhccCCceEehhhhHHHHHHhhcCCCCcceeeeeeeccccCCcccceeEEeehhHHHHHH
Confidence               12222222222 222211    2234566777788888888888777777776555666777888777666555542


Q ss_pred             hhHHHHHHHh
Q 017754          280 SGVIASGIYD  289 (366)
Q Consensus       280 gp~l~G~l~d  289 (366)
                       ..+.+...+
T Consensus       412 -~~~~~~~~~  420 (480)
T KOG2563|consen  412 -VFIMGILAE  420 (480)
T ss_pred             -HHHHHHHhh
Confidence             444444433

>PF06813 Nodulin-like: Nodulin-like; InterPro: IPR010658 This entry represents a conserved region within plant nodulin-like proteins and a number of uncharacterised proteins

Probab=98.04  E-value=0.00018  Score=66.29  Aligned_cols=127  Identities=16%  Similarity=0.119  Sum_probs=82.3

Q ss_pred             hhhhHHHHHhcHHHHHHHhCCChhHH--HHHHHHHHHhhhhhhhhhhhhhhhhhccCchhHHHHHHHHHHHHHHHHHH--
Q 017754          148 ASGSGLTVIDNLGQICQSLGYADTSI--YVSMISIWNFLGRVGGGYFSEAIVRKFAYPRPVAMAVAQVVMAFALLYYA--  223 (366)
Q Consensus       148 ~~~~~~~~~~~l~~i~~~~g~s~~~~--~vsl~~i~~~~g~~~~G~lsD~~grr~~~~R~~~~~~~~~~~~~~~~l~~--  223 (366)
                      ..+..+.+..+-|++-+.+|++.++.  +.+.-.++..+| +..|.+.|+++.+...      .++.+...+|+.++.  
T Consensus        14 ~~Gt~Y~Fs~yS~~Lk~~l~~sq~~l~~l~~~~~~G~~~G-~~~G~l~d~~gp~~~l------~iG~~~~~~GY~~~~l~   86 (250)
T PF06813_consen   14 CSGTTYTFSAYSPQLKSRLGYSQSQLNTLSTAGDIGSYFG-ILAGLLYDRFGPWVVL------LIGAVLGFVGYGLLWLA   86 (250)
T ss_pred             hcCcccchhhhhHHHHHHhCCCHHHHHHHHHHHHHHhhcc-HHHHHHHHhcchHHHH------HHHHHHHHHHHHHHHHH
Confidence            34556677788899999999998876  444445666664 8889999999865443      667777777766643  


Q ss_pred             hhh----hH--HHHHHHHHHHHHHhhhhhhHHHHHHHhhCCCchhhHHHHHHhhhhhhHHhhhhH
Q 017754          224 IGW----PG--EIYVTTVLVGLSYGAHWAIVPAAASELFGLKSFGALYNFLTLASPAGSLIFSGV  282 (366)
Q Consensus       224 ~~~----~~--~l~~~~~l~G~~~g~~~~~~~~~~se~f~~~~~g~~~g~~~~~~~~G~~i~gp~  282 (366)
                      ...    +.  .+.+...+.|.+.....+....+..+.|| ++||++.|+.-....+++.+++.+
T Consensus        87 ~~~~i~~~~~~~~~~~~~l~~~s~~~~~ta~lvt~~~NFP-~~RG~vvgilk~~~GLSaai~t~i  150 (250)
T PF06813_consen   87 VSGRIPSLPVWLMCLFLFLGGNSSCWFNTASLVTCVRNFP-RSRGTVVGILKGFFGLSAAIFTQI  150 (250)
T ss_pred             HhCccCccchHHHHHHHHHHcccHHHhhhHHHHHHHHhCc-cccCceehhhhHHHHhHHHHHHHH
Confidence            111    11  22222233333332222333445568896 689999999999988888876543

>COG2211 MelB Na+/melibiose symporter and related transporters [Carbohydrate transport and metabolism]

Probab=98.01  E-value=0.00021  Score=71.23  Aligned_cols=136  Identities=15%  Similarity=0.133  Sum_probs=98.9

Q ss_pred             HhcHHHHH-HHhCCChhHH--HHHHHHHHHhhhhhhhhhhhhhhhhhccCchhHHHHHHHHHHHHHHHHHHhhh----hH
Q 017754          156 IDNLGQIC-QSLGYADTSI--YVSMISIWNFLGRVGGGYFSEAIVRKFAYPRPVAMAVAQVVMAFALLYYAIGW----PG  228 (366)
Q Consensus       156 ~~~l~~i~-~~~g~s~~~~--~vsl~~i~~~~g~~~~G~lsD~~grr~~~~R~~~~~~~~~~~~~~~~l~~~~~----~~  228 (366)
                      ..++..+. ...|.+...+  ...+.-++.++.-|+.|.++||..+|+...||+++..+..+..+..+.+..++    ..
T Consensus        32 ~~yLl~fYTdv~Gis~~~aG~iflv~RiiDAi~DP~~G~i~D~t~~r~GrfRP~lL~g~ip~~i~~~l~F~~p~~~~~~k  111 (467)
T COG2211          32 VLYLLFFYTDVFGLSAALAGTIFLVARIIDAITDPIMGFIVDRTRSRWGRFRPWLLWGAIPFAIVAVLLFITPDFSMTGK  111 (467)
T ss_pred             HHHHHHHHhcccCCcHHHHHHHHHHHHHHHHHhcchheeeecccccccccccHHHHHHhHHHHHHHHHHHcCCCcccCcc
Confidence            34445544 4478887765  66667789999999999999999888888888887777777666666655432    11


Q ss_pred             --HHHHHHHHHHHHHhhhhhhHHHHHHHhhC-CCchhhHHHHHHhhhhhhHHhhhhHHHHHHHhhhh
Q 017754          229 --EIYVTTVLVGLSYGAHWAIVPAAASELFG-LKSFGALYNFLTLASPAGSLIFSGVIASGIYDYYA  292 (366)
Q Consensus       229 --~l~~~~~l~G~~~g~~~~~~~~~~se~f~-~~~~g~~~g~~~~~~~~G~~i~gp~l~G~l~d~~~  292 (366)
                        ..++...+.++++........++.+++-. +++|....+.=.....+|.++ ...+.+.+....+
T Consensus       112 ~~ya~vtY~l~~l~YT~vniPy~al~~~iT~d~~ER~~l~s~R~~~~~~g~~l-~~~~~~plv~~~g  177 (467)
T COG2211         112 LIYALVTYMLLGLGYTLVNIPYGALGPEITQDPQERASLTSWRMVFASLGGLL-VAVLFPPLVKLFG  177 (467)
T ss_pred             hHHHHHHHHHHHHHHHheeCchhhcchhhcCCHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHhC
Confidence              33455667788888888777888888764 456999999888888888776 4556666665554

>COG0477 ProP Permeases of the major facilitator superfamily [Carbohydrate transport and metabolism / Amino acid transport and metabolism / Inorganic ion transport and metabolism / General function prediction only]

Probab=97.97  E-value=0.00071  Score=61.35  Aligned_cols=129  Identities=17%  Similarity=0.202  Sum_probs=88.8

Q ss_pred             HHhcHHHHHHHhCCCh----hHHHHHHHHHHHhhhhhhhhhhhhhhhhhccCchhHHHHHHHHHHHHHHHHHH-hhh--h
Q 017754          155 VIDNLGQICQSLGYAD----TSIYVSMISIWNFLGRVGGGYFSEAIVRKFAYPRPVAMAVAQVVMAFALLYYA-IGW--P  227 (366)
Q Consensus       155 ~~~~l~~i~~~~g~s~----~~~~vsl~~i~~~~g~~~~G~lsD~~grr~~~~R~~~~~~~~~~~~~~~~l~~-~~~--~  227 (366)
                      .....+.+..+.+.+.    .....+...+...++.+..|.++||+|||+..      ..+......+.++.. ...  .
T Consensus        21 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~------~~~~~~~~~~~~~~~~~~~~~~   94 (338)
T COG0477          21 LSPALPLLLSTLSLSSGRLLYGLLLSAFFLGYAIGSLLAGPLGDRYGRRKVL------IIGLLLFLLGTLLLALAPNVGL   94 (338)
T ss_pred             HHHHHHHHHHHcCCCchhHHHHHHHHHHHHHHHHHhhhhhhccccccchHHH------HHHHHHHHHHHHHHHhCccchH
Confidence            3345666666665554    23377778888888889999999999887322      333322233323322 222  4


Q ss_pred             HHHHHHHHHHHHHHhhhhhhHHHHHHHhhCC-CchhhHHHHHHh-hhhhhHHhhhhHHHHHHHhh
Q 017754          228 GEIYVTTVLVGLSYGAHWAIVPAAASELFGL-KSFGALYNFLTL-ASPAGSLIFSGVIASGIYDY  290 (366)
Q Consensus       228 ~~l~~~~~l~G~~~g~~~~~~~~~~se~f~~-~~~g~~~g~~~~-~~~~G~~i~gp~l~G~l~d~  290 (366)
                      ..+++..+..|++.+...+...++++|.++. ++++...+.... ...+|..+ +|.+++.+.+.
T Consensus        95 ~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~  158 (338)
T COG0477          95 ALLLILRLLQGLGGGGLLPVASALLSEWFPEATERGLAVGLVTLGAGALGLAL-GPLLAGLLLGA  158 (338)
T ss_pred             HHHHHHHHHHHhhhHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHH
Confidence            4566667778888888888889999999987 678888888888 56777775 88888887776

>KOG2816 consensus Predicted transporter ADD1 (major facilitator superfamily) [General function prediction only]

Probab=97.96  E-value=6.5e-05  Score=75.35  Aligned_cols=131  Identities=15%  Similarity=0.175  Sum_probs=93.5

Q ss_pred             HHHHhhhhhhhhhhhhhhhhhccCchhHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHH--HHhhhhhhHHHHHHHhh
Q 017754          179 SIWNFLGRVGGGYFSEAIVRKFAYPRPVAMAVAQVVMAFALLYYAIGWPGEIYVTTVLVGL--SYGAHWAIVPAAASELF  256 (366)
Q Consensus       179 ~i~~~~g~~~~G~lsD~~grr~~~~R~~~~~~~~~~~~~~~~l~~~~~~~~l~~~~~l~G~--~~g~~~~~~~~~~se~f  256 (366)
                      .+..++-.++.|.+||++|||...      ........+.-+......    ++..++.++  ++++.++...++++|.-
T Consensus        72 ~~~~~i~s~~iG~lSD~~grk~~L------~~~~~~~~l~~~~~~~~~----~~~~~~~~l~g~~~~~~s~~~a~vadis  141 (463)
T KOG2816|consen   72 GLLTLISSPLIGALSDRYGRKVVL------LLPLFGTILPALCLLFQG----YWFFLLLGLSGGFSAIFSVGFAYVADIS  141 (463)
T ss_pred             HHHHHHHHhhhHHhhhhhhhhhhH------HHHHHHHHHhHHHHHHHH----HHHhhhcccccchhhhhhhhhhheeecc
Confidence            566778889999999999998765      222222222222222211    222224433  24566677788999999


Q ss_pred             CCCchhhHHHHHHhhhhhhHHhhhhHHHHHHHhhhhhhhhhhhhhccCCCCCcccCCCCCCcccCCcchHHHHHHHHHHH
Q 017754          257 GLKSFGALYNFLTLASPAGSLIFSGVIASGIYDYYAEKQAGLLWKYNGNMLPVSFRDQETPTCLGSICYSITCGIMAGLC  336 (366)
Q Consensus       257 ~~~~~g~~~g~~~~~~~~G~~i~gp~l~G~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~g~~~~~~~f~i~~~~~  336 (366)
                      ..++|...+|+++.....+..+ +|.+++++....+                                +...|++.++..
T Consensus       142 ~~~~R~~~~gll~~~~~~~~~~-~p~~~~~~~~~~~--------------------------------~a~~f~ia~~~~  188 (463)
T KOG2816|consen  142 SEEERSSSIGLLSGTFGAGLVI-GPALGGYLVKFLG--------------------------------IALVFLIAAASG  188 (463)
T ss_pred             chhHHHHHHHHHHHHHHHHHhH-HHHHHHHHHHhcC--------------------------------chHHHHHHHHHH
Confidence            9999999999999988899886 9999999988765                                888999988888


Q ss_pred             HHHHHHHHHHhhhchH
Q 017754          337 IIAMVMSLIVVHRTKS  352 (366)
Q Consensus       337 ~~~~~~~~~~~~~~r~  352 (366)
                      +++.+-.++..+++..
T Consensus       189 ~~~~~y~~~~l~Esl~  204 (463)
T KOG2816|consen  189 ILSLLYMLLFLPESLQ  204 (463)
T ss_pred             HHHHHHHhhccccccC
Confidence            8887777776666443

>KOG0255 consensus Synaptic vesicle transporter SVOP and related transporters (major facilitator superfamily) [General function prediction only]

Probab=97.95  E-value=0.0011  Score=67.57  Aligned_cols=101  Identities=12%  Similarity=0.134  Sum_probs=71.2

Q ss_pred             HHhhhhhhhhhhhhhhhhhccCchhHHHHHHHHHHHHHHHHHHh-hh-hH--HHHHHHHHHHHHHhhhhhhHHHHHHHhh
Q 017754          181 WNFLGRVGGGYFSEAIVRKFAYPRPVAMAVAQVVMAFALLYYAI-GW-PG--EIYVTTVLVGLSYGAHWAIVPAAASELF  256 (366)
Q Consensus       181 ~~~~g~~~~G~lsD~~grr~~~~R~~~~~~~~~~~~~~~~l~~~-~~-~~--~l~~~~~l~G~~~g~~~~~~~~~~se~f  256 (366)
                      ....+....+...|++|||...      ..+..+..++++.++. .. ..  ...+...+..++.+..+...+...+|++
T Consensus       362 ~~~p~~~~~~~~~~~~gR~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~el~  435 (521)
T KOG0255|consen  362 VELPAYFRNGLLLPEFGRRPPL------FLSLFLAGIGLLLFGWLPDDLGGWLHWILPLLGKFFIGSAFNLIFLYSAELI  435 (521)
T ss_pred             HHhhHHHHHHHHHHHhCcHHHH------HHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence            4444555668888999887655      7777777777777653 22 12  2233333444556666777788999999


Q ss_pred             CCCchhhHHHHHHhhhhhhHHhhhhHHHHHHH
Q 017754          257 GLKSFGALYNFLTLASPAGSLIFSGVIASGIY  288 (366)
Q Consensus       257 ~~~~~g~~~g~~~~~~~~G~~i~gp~l~G~l~  288 (366)
                      |+..|..+.+...+...+|+.+ +|.+.-...
T Consensus       436 pt~~r~~~~~~~~~~~~~~~i~-ap~~~~~~~  466 (521)
T KOG0255|consen  436 PTVVRNTAVGAISAAARLGSIL-APLFPLLLR  466 (521)
T ss_pred             cHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHh
Confidence            9999999999999999999995 787664443

>PF06609 TRI12: Fungal trichothecene efflux pump (TRI12); InterPro: IPR010573 This family consists of several fungal specific trichothecene efflux pump proteins

Probab=97.88  E-value=0.0014  Score=67.66  Aligned_cols=156  Identities=15%  Similarity=0.057  Sum_probs=97.9

Q ss_pred             HHHHhhh-hhHHHHHHHHHHhhhhHHHHHhcHHHHHHH-hCCChh---H--HHHHHHHHHHhhhhhhhhhhhhhhhhhcc
Q 017754          129 LPQALMK-ADFLLLFFSLVLASGSGLTVIDNLGQICQS-LGYADT---S--IYVSMISIWNFLGRVGGGYFSEAIVRKFA  201 (366)
Q Consensus       129 ~~~~l~~-~~~~ll~~~~~~~~~~~~~~~~~l~~i~~~-~g~s~~---~--~~vsl~~i~~~~g~~~~G~lsD~~grr~~  201 (366)
                      ..+++++ +.|+...+..++.....+......|+.... ++-+..   .  ......+++..+|.++.|.+.-+++|-  
T Consensus       302 P~~Lf~~~r~~~~~lvi~fi~G~~~~s~~~l~p~~~~~vf~~d~~~~~~~~~~s~~~~fg~~~g~~i~g~l~~~ir~~--  379 (599)
T PF06609_consen  302 PHRLFKDRRGFAALLVISFISGMNFFSVNILWPQQVVNVFGSDPISITEIGWISSPVGFGSCAGAVILGLLFSKIRHI--  379 (599)
T ss_pred             CHHHhccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCCcccceeehhhhhHHHHHHHHHHHHHHHHHHccch--
Confidence            4567776 456666555555544455555666666544 443321   1  245566777788888888887666432  


Q ss_pred             CchhHHHHHHHHHHHHHHHHHH---hhhhHHHHHHHHHHHHHHhhhhhhHHHHHHHhhCCCchhhHHHHHHhhhhhhHHh
Q 017754          202 YPRPVAMAVAQVVMAFALLYYA---IGWPGEIYVTTVLVGLSYGAHWAIVPAAASELFGLKSFGALYNFLTLASPAGSLI  278 (366)
Q Consensus       202 ~~R~~~~~~~~~~~~~~~~l~~---~~~~~~l~~~~~l~G~~~g~~~~~~~~~~se~f~~~~~g~~~g~~~~~~~~G~~i  278 (366)
                        | +.+.++.+++.+++-+++   ..+....+...++.|++.|....+....+.-..|.++.|++.++....-.+|+.+
T Consensus       380 --K-w~li~~~~~~ta~~Gama~~~~~n~~~~i~~~~l~g~giG~~~~~~~~~~ql~~p~~~ig~a~gL~~s~R~~GGsI  456 (599)
T PF06609_consen  380 --K-WQLIFGSVLMTAFCGAMAAVRPDNKNAAIAFLVLAGFGIGGILVPAIVIAQLIVPDEDIGTATGLTGSIRSIGGSI  456 (599)
T ss_pred             --h-HHHHHHHHHHHHHHHHHHHccCCCcchHHHHHHHHHHhHHHHHHHHHHeeEeeeCchHHHHHHHHHHHHHHHhhHH
Confidence              2 233444555554433443   2334455667778888888766555555555667788999999999998888886


Q ss_pred             hhhHHHHHHHhh
Q 017754          279 FSGVIASGIYDY  290 (366)
Q Consensus       279 ~gp~l~G~l~d~  290 (366)
                       |.-+...++..
T Consensus       457 -g~aIy~~I~~n  467 (599)
T PF06609_consen  457 -GYAIYNAIFTN  467 (599)
T ss_pred             -HHHHHHHHHHh
Confidence             76666665543

Many of the genes involved in trichothecene toxin biosynthesis in Fusarium sporotrichioides are present within a gene cluster. It has been suggested that TRI12 may play a role in F. sporotrichioides self-protection against trichothecenes [].

>KOG0253 consensus Synaptic vesicle transporter SV2 (major facilitator superfamily) [General function prediction only]

Probab=97.76  E-value=0.00068  Score=65.20  Aligned_cols=133  Identities=13%  Similarity=0.088  Sum_probs=91.6

Q ss_pred             HHHHHHHHHhhhhhhhhhhhhhhhhhccCchhHHHHHHHHHHHHHHHHHH-hhhhHHHHHHHHHHHHHHhhhhhhHHHHH
Q 017754          174 YVSMISIWNFLGRVGGGYFSEAIVRKFAYPRPVAMAVAQVVMAFALLYYA-IGWPGEIYVTTVLVGLSYGAHWAIVPAAA  252 (366)
Q Consensus       174 ~vsl~~i~~~~g~~~~G~lsD~~grr~~~~R~~~~~~~~~~~~~~~~l~~-~~~~~~l~~~~~l~G~~~g~~~~~~~~~~  252 (366)
                      +......+..+|...+|.++|++|||+..      ....++.++.-.+-. .++...+.+...+.|+|.|+ .+...++-
T Consensus       118 lt~~v~~gmllga~~w~l~~d~~grr~~f------~~T~l~t~v~~~is~~spnf~~L~~f~~l~~~g~gg-~pv~~~~y  190 (528)
T KOG0253|consen  118 LTLSVFLGMLVGAMVWGLSADTIGRRKGF------NLTFLVTGVFGVISGASPNFASLCVFRALWGFGVGG-LPVDSAIY  190 (528)
T ss_pred             HHHHHHhhhhhhhhhhheehhhhhcchhh------hhhHHHHHHHHHhhcCCCCeehhhHHHHHHhccCCC-ccHhHHHH
Confidence            44555567778999999999999999877      444444443333322 34556788888899999988 77777788


Q ss_pred             HHhhCCCchhhHHHHHHhhhhhhHHhhhhHHHHHHHhhhhhhhhhhhhhccCCCCCcccCCCCCCcccCCcchHHHHHHH
Q 017754          253 SELFGLKSFGALYNFLTLASPAGSLIFSGVIASGIYDYYAEKQAGLLWKYNGNMLPVSFRDQETPTCLGSICYSITCGIM  332 (366)
Q Consensus       253 se~f~~~~~g~~~g~~~~~~~~G~~i~gp~l~G~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~g~~~~~~~f~i~  332 (366)
                      .|..|..+++.-.=.. ..+.+|..+ ...++=......|                                ||+-...+
T Consensus       191 le~lp~~~r~~~~V~~-~~waig~v~-ea~law~vm~~~g--------------------------------wr~~l~~~  236 (528)
T KOG0253|consen  191 LEFLPSSHRWLLTVMS-FFWAIGQVF-EALLAWGVMSNFG--------------------------------WRYLLFTS  236 (528)
T ss_pred             HHhccCcCCCcchhHH-HHHHHHHHH-HHHHHHHHHHhhh--------------------------------HHHHHHHH
Confidence            8888888887766555 777888874 5555544455555                                88877766


Q ss_pred             HHHHHHHHHHHHHHh
Q 017754          333 AGLCIIAMVMSLIVV  347 (366)
Q Consensus       333 ~~~~~~~~~~~~~~~  347 (366)
                      ..-..+.+..+.++.
T Consensus       237 ~~pl~~~a~f~~w~~  251 (528)
T KOG0253|consen  237 STPLMFAARFLVWVY  251 (528)
T ss_pred             HhHHHHHHHHHhhcc
Confidence            655555555555543

>PF03092 BT1: BT1 family; InterPro: IPR004324 Members of this family are transmembrane proteins

Probab=97.75  E-value=0.00066  Score=67.78  Aligned_cols=158  Identities=19%  Similarity=0.215  Sum_probs=103.9

Q ss_pred             cHHHHHHHhCCChhHH-HHHHHHHHHhhhhhhhhhhhhhhhhhccCchhHHHHHHHHHHHHHHHHHHh-h----hhHHHH
Q 017754          158 NLGQICQSLGYADTSI-YVSMISIWNFLGRVGGGYFSEAIVRKFAYPRPVAMAVAQVVMAFALLYYAI-G----WPGEIY  231 (366)
Q Consensus       158 ~l~~i~~~~g~s~~~~-~vsl~~i~~~~g~~~~G~lsD~~grr~~~~R~~~~~~~~~~~~~~~~l~~~-~----~~~~l~  231 (366)
                      ..+.+-+++|.+.++. ......-......++.|.+||-+-- ..++|+..+.++.++.+++.+.++. +    +.....
T Consensus        12 ~~~~l~~~l~ls~~~~~~~~~~~~lPw~~Kp~~g~lsD~~pi-~G~rr~~Y~~i~~~~~~~~~~~~~~~~~~~~s~~~~~   90 (433)
T PF03092_consen   12 IYPFLKDDLGLSPAQLQRLSSLASLPWSIKPLYGLLSDSFPI-FGYRRKPYMIIGWLLGAVSALVLALLPASESSAAIAV   90 (433)
T ss_pred             HHHHHHHHcCCCHHHHHHHHHHHhCchHHhhhHHhhcccccc-cCCcchHHHHHHHHHHHHHHHHHHhcccccchhhhHH
Confidence            3455567799998765 3333333445678999999999732 2334555556666665444444431 1    223344


Q ss_pred             HHHHHHHHHHhhhhhhHHHHHHHhhCC--CchhhHHHHHHhhhhhhHHhhhhHHHHHHHhhhhhhhhhhhhhccCCCCCc
Q 017754          232 VTTVLVGLSYGAHWAIVPAAASELFGL--KSFGALYNFLTLASPAGSLIFSGVIASGIYDYYAEKQAGLLWKYNGNMLPV  309 (366)
Q Consensus       232 ~~~~l~G~~~g~~~~~~~~~~se~f~~--~~~g~~~g~~~~~~~~G~~i~gp~l~G~l~d~~~~~~~~~~~~~~~~~~~~  309 (366)
                      +..++..+|+...-.+.-+.+.|.-..  +.+|...+.......+|+++ +..+.|.+.+..+                 
T Consensus        91 ~~l~la~~g~a~~DV~aDa~vvE~~~~~p~~~g~lqS~~~~~~~~G~lv-~~~l~G~l~~~~~-----------------  152 (433)
T PF03092_consen   91 VLLFLASFGYAFADVAADALVVELARREPESRGDLQSFVWGVRSVGSLV-GSLLSGPLLDSFG-----------------  152 (433)
T ss_pred             HHHHHHHHHHHHHHHhhhHHHHHHhhcCCchhHHHHHHHHHHHHHHHHH-HHHhhhhhhhcCC-----------------
Confidence            455566677777777777788887632  23778888888888899996 8889999988876                 


Q ss_pred             ccCCCCCCcccCCcchHHHHHHHHHHHHHHHHHHHHHhhh
Q 017754          310 SFRDQETPTCLGSICYSITCGIMAGLCIIAMVMSLIVVHR  349 (366)
Q Consensus       310 ~~~~~~~~~c~g~~~~~~~f~i~~~~~~~~~~~~~~~~~~  349 (366)
                                     ++..|.+.+++..+..+..+.+..+
T Consensus       153 ---------------~~~~f~i~~~~~~l~~~~~~~~~~e  177 (433)
T PF03092_consen  153 ---------------PQGVFLISAALPLLMLIVALFLLEE  177 (433)
T ss_pred             ---------------CeEEehHHHHHHHHHHHHHHHhhhh
Confidence                           6777888777777766666665554

Several are Leishmania putative proteins that are thought to be pteridine transporters [, ]. This family also contains five putative Arabidopsis thaliana proteins of unknown function as well as two predicted prokaryotic proteins (from the cyanobacteria Synechocystis and Synechococcus).

>TIGR00805 oat sodium-independent organic anion transporter

Probab=97.74  E-value=0.0012  Score=69.24  Aligned_cols=72  Identities=15%  Similarity=0.238  Sum_probs=58.4

Q ss_pred             CHHHHhhhhhHHHHHHHHHHhhhhHHHHHhcHHHHHHH-hCCChhHH--HHHHHHH-HHhhhhhhhhhhhhhhhhh
Q 017754          128 TLPQALMKADFLLLFFSLVLASGSGLTVIDNLGQICQS-LGYADTSI--YVSMISI-WNFLGRVGGGYFSEAIVRK  199 (366)
Q Consensus       128 ~~~~~l~~~~~~ll~~~~~~~~~~~~~~~~~l~~i~~~-~g~s~~~~--~vsl~~i-~~~~g~~~~G~lsD~~grr  199 (366)
                      .++++++++.+|...+..++.......+..++|.+.++ +|++...+  +.++..+ +..+|.+++|+++||++.+
T Consensus       322 ~~~~Ll~n~~f~~~~l~~~~~~~~~~~~~~~lP~yl~~~~g~s~~~ag~l~~~~~i~~~~vG~~l~G~l~~r~~~~  397 (633)
T TIGR00805       322 IIKRLLCNPIYMLVILAQVIDSLAFNGYITFLPKYLENQYGISSAEANFLIGVVNLPAAGLGYLIGGFIMKKFKLN  397 (633)
T ss_pred             HHHHHHcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcHHHHHHHhhhhhhhHHHHHHhhhhheeeeeccc
Confidence            36678999999999988888888888899999999875 79887765  4445554 5678999999999999754

Proteins of the OAT family catalyze the Na+-independent facilitated transport of organic anions such as bromosulfobromophthalein and prostaglandins as well as conjugated and unconjugated bile acids (taurocholate and cholate, respectively). These transporters have been characterized in mammals, but homologues are present in C. elegans and A. thaliana. Some of the mammalian proteins exhibit a high degree of tissue specificity. For example, the rat OAT is found at high levels in liver and kidney and at lower levels in other tissues. These proteins possess 10-12 putative a-helical transmembrane spanners. They may catalyze electrogenic anion uniport or anion exchange.

>KOG2325 consensus Predicted transporter/transmembrane protein [General function prediction only]

Probab=97.64  E-value=0.00064  Score=68.08  Aligned_cols=186  Identities=17%  Similarity=0.114  Sum_probs=116.8

Q ss_pred             HHHHHHHHHHhhhhHHHHHhcHHHHHHHhCCC--hhH--HHHHHHHHHHhhhhhhhhhhhhhhhh-hccCchhHHHHHHH
Q 017754          138 FLLLFFSLVLASGSGLTVIDNLGQICQSLGYA--DTS--IYVSMISIWNFLGRVGGGYFSEAIVR-KFAYPRPVAMAVAQ  212 (366)
Q Consensus       138 ~~ll~~~~~~~~~~~~~~~~~l~~i~~~~g~s--~~~--~~vsl~~i~~~~g~~~~G~lsD~~gr-r~~~~R~~~~~~~~  212 (366)
                      .|+..+..++.......+....-++.+++.-+  .+.  ..++..+++..++.+..|+-+.|.+. |+.+      .++.
T Consensus        36 i~l~~~~sfl~~v~~sI~~~s~wpYl~~lD~~A~~~ffG~viaa~slg~~i~~liF~~Ws~k~~~~k~Pl------i~s~  109 (488)
T KOG2325|consen   36 IYLALLNSFLVAVQFSIYLTSMWPYLQKLDPTATATFFGLVIAASSLGHAIFSLIFGIWSNKTGSVKKPL------IVSF  109 (488)
T ss_pred             HHHHHHHHHHHhhhheEEEeecchhhhhcCCCCCcchhhHHHHHHHHHHHhcchhhcccccccCCcccCH------HHHH
Confidence            45554444444443333333444566664333  222  27888899999999999999988874 3333      7788


Q ss_pred             HHHHHHHHHHH-h----h-hhHHHHHHHHHHHHHHhhhhhhHHHHHHHhhCCCchhhHHHHHHhhhhhhHHhhhhHHHHH
Q 017754          213 VVMAFALLYYA-I----G-WPGEIYVTTVLVGLSYGAHWAIVPAAASELFGLKSFGALYNFLTLASPAGSLIFSGVIASG  286 (366)
Q Consensus       213 ~~~~~~~~l~~-~----~-~~~~l~~~~~l~G~~~g~~~~~~~~~~se~f~~~~~g~~~g~~~~~~~~G~~i~gp~l~G~  286 (366)
                      +++++|++++. .    . ..+.+++++++.|+|.|. .+..=+++++---.+.|.++++..+.+..+|..+ ||.+...
T Consensus       110 ii~~~g~llY~~l~~~~~~~~y~mL~~R~l~Gvg~~n-~a~lR~Y~a~~s~~~dR~rA~a~~~~~~vlg~il-Gp~~q~~  187 (488)
T KOG2325|consen  110 LIAIIGNLLYLALAYVPNGVKYLMLVARILTGVGVGN-FAVLRAYIADASTVEDRPRAFAATSGGFVLGIIL-GPTIQLA  187 (488)
T ss_pred             HHHHHHHHHHHHHHhcccchHHHHHHHHHHcCcCccc-HHHHHHHHHhccCccchHHHHHHhhhHHHHHHHH-hHHHHHH
Confidence            88888888862 2    2 345778899999999776 4667788888777778888887777766666664 6654433


Q ss_pred             HHhhhhhhhhhhhhhccCCCCCcccCCCCCCcccCCcchHHHHHHHHHHHHHHHHHHHHHhhhc
Q 017754          287 IYDYYAEKQAGLLWKYNGNMLPVSFRDQETPTCLGSICYSITCGIMAGLCIIAMVMSLIVVHRT  350 (366)
Q Consensus       287 l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~g~~~~~~~f~i~~~~~~~~~~~~~~~~~~~  350 (366)
                      +. .-+.+.-      .-            ..-.-=+-|...-|+++.++++.++...+..++.
T Consensus       188 f~-~Lg~~G~------~i------------~~~~~~n~YTap~w~m~i~~i~~~v~i~~~f~E~  232 (488)
T KOG2325|consen  188 FT-PLGEKGF------MI------------LPGLIFNMYTAPAWLMAILWIIYIVIILFFFKEV  232 (488)
T ss_pred             Hh-hhcCCce------EE------------cCcceEEecchHHHHHHHHHHHHHHHHHhheeec
Confidence            22 1111100      00            0000012377788899989988888777766553

>KOG1330 consensus Sugar transporter/spinster transmembrane protein [Carbohydrate transport and metabolism]

Probab=97.61  E-value=0.00011  Score=72.31  Aligned_cols=138  Identities=17%  Similarity=0.146  Sum_probs=78.8

Q ss_pred             HHHhcHHHHHH----HhCCChhH--HHHHHHHHHHhhhhhhhhhhhhhhhhhccC-ch----hHHHHHHHHHHHHHHHHH
Q 017754          154 TVIDNLGQICQ----SLGYADTS--IYVSMISIWNFLGRVGGGYFSEAIVRKFAY-PR----PVAMAVAQVVMAFALLYY  222 (366)
Q Consensus       154 ~~~~~l~~i~~----~~g~s~~~--~~vsl~~i~~~~g~~~~G~lsD~~grr~~~-~R----~~~~~~~~~~~~~~~~l~  222 (366)
                      ++..|.|.+..    -.|++...  ++..+.-.++.+|.+.+|.++|++.|+..- .|    ......+..+.+....++
T Consensus       262 s~sww~p~~~~~~~~~~~~~~~~~~ifg~vt~~~G~lGvl~Ggiisd~~~~~~~~~~~~~~~q~~~~~g~~~s~~~L~~~  341 (493)
T KOG1330|consen  262 SLSWWAPAFIYYSYELIGFDHNATLIFGGVTCAGGSLGVLFGGIISDKLSRIFPNSGTLRASQLSAALGAPLSIPFLFLF  341 (493)
T ss_pred             ccchhhhhHHHHHHHHhCCccccchhhhhHHHhhchhhheehHHHHHHHHHhcccccchhHHHHHHhhhhhHHHHHHHHH
Confidence            34455555442    23544332  388888899999999999999998773211 01    111112222222222222


Q ss_pred             HhhhhHHHHHHHHH--HHHH-HhhhhhhHHHHHHHhhCCCchhhHHHHHHhhhhh-hHHhhhhHHHHHHHhhhh
Q 017754          223 AIGWPGEIYVTTVL--VGLS-YGAHWAIVPAAASELFGLKSFGALYNFLTLASPA-GSLIFSGVIASGIYDYYA  292 (366)
Q Consensus       223 ~~~~~~~l~~~~~l--~G~~-~g~~~~~~~~~~se~f~~~~~g~~~g~~~~~~~~-G~~i~gp~l~G~l~d~~~  292 (366)
                      .......++.+.++  +|.. .-..++....+..+..++++|.+++++..+...+ |.+ -+|++.|.+.|+--
T Consensus       342 ~~~~~~s~~~~~il~~~g~~~~~~~~a~n~~i~l~vV~p~~Rt~a~a~~~~~~h~fgd~-~~p~ivGilsd~l~  414 (493)
T KOG1330|consen  342 PAFTSSSMIFGLILFLVGETISWFNWATNNPIFLEVVPPSRRTTAYALDTVFEHIFGDA-ASPYIVGILSDKLR  414 (493)
T ss_pred             HhhhhHHHHHHHHHHHHHHHHHhcccccccceeeEecCcccccHHHHHHHHHHHHhccC-CCcceehhHHHHhh
Confidence            22112233333333  3332 1223455555778888999999999998776655 555 36779999998753

>PF05978 UNC-93: Ion channel regulatory protein UNC-93; InterPro: IPR010291 The proteins in this family are represented by UNC-93 from Caenorhabditis elegans

Probab=97.45  E-value=0.005  Score=52.56  Aligned_cols=108  Identities=7%  Similarity=0.055  Sum_probs=78.3

Q ss_pred             HHHHHHHHHhhhhhhhhhhhhhhhhhccCchhHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHhhhhhhHHHHHH
Q 017754          174 YVSMISIWNFLGRVGGGYFSEAIVRKFAYPRPVAMAVAQVVMAFALLYYAIGWPGEIYVTTVLVGLSYGAHWAIVPAAAS  253 (366)
Q Consensus       174 ~vsl~~i~~~~g~~~~G~lsD~~grr~~~~R~~~~~~~~~~~~~~~~l~~~~~~~~l~~~~~l~G~~~g~~~~~~~~~~s  253 (366)
                      -.++......+..++.+.+.+++|.|+.+      .++.+...+-...+...+...++.+.++.|++.+..|+....++.
T Consensus        42 slai~Y~~~~~s~l~~P~iv~~lg~K~sm------~lg~~~y~~y~~~~~~~~~~~l~~~s~l~G~~~a~lW~aqg~ylt  115 (156)
T PF05978_consen   42 SLAILYGSFAISCLFAPSIVNKLGPKWSM------ILGSLGYAIYIASFFYPNSYTLYPASALLGFGAALLWTAQGTYLT  115 (156)
T ss_pred             HHHHHHHHHHHHHHhHHHHHHHHhhHHHH------HHHHHHHHHHHHHHHhhhHHHHHHHHHHHhhhhHHhhHhhhHHHH
Confidence            45555566667777788888999887665      555555444333333456678899999999999999999999999


Q ss_pred             HhhCCCchhhHHHHHHhhhhhhHHhhhhHHHHHHH
Q 017754          254 ELFGLKSFGALYNFLTLASPAGSLIFSGVIASGIY  288 (366)
Q Consensus       254 e~f~~~~~g~~~g~~~~~~~~G~~i~gp~l~G~l~  288 (366)
                      +....+.+++..++.......+..+ |.++.-.++
T Consensus       116 ~~s~~~~~~~~~~ifw~i~~~s~i~-G~~~~~~~~  149 (156)
T PF05978_consen  116 SYSTEETIGRNTGIFWAIFQSSLIF-GNLFLFFIF  149 (156)
T ss_pred             HcCCHHHHhhHHHHHHHHHHHHHHH-HHHHHHHHH
Confidence            9888888888888877777766663 655544443

UNC-93 colocalizes with SUP-10 and SUP-9 within muscle cells. Genetic studies suggest that these three proteins forms complex that coordinates muscle contraction. The function of UNC-93 is not known but is most likely an ion channel regulatory protein [].

>PRK03612 spermidine synthase; Provisional

Probab=97.39  E-value=0.035  Score=56.78  Aligned_cols=123  Identities=19%  Similarity=0.209  Sum_probs=65.0

Q ss_pred             HhCCChhHH--HHHHHHHHHhhhhhhhhhhhhhhhhhccCchhHHHHHHHHHHHHHHHHHH-hhh----hHHHHHHHHHH
Q 017754          165 SLGYADTSI--YVSMISIWNFLGRVGGGYFSEAIVRKFAYPRPVAMAVAQVVMAFALLYYA-IGW----PGEIYVTTVLV  237 (366)
Q Consensus       165 ~~g~s~~~~--~vsl~~i~~~~g~~~~G~lsD~~grr~~~~R~~~~~~~~~~~~~~~~l~~-~~~----~~~l~~~~~l~  237 (366)
                      -+|.+....  .++++..+..+|..++|++.++..++...   .-+.++++......++.. ...    ...++...++.
T Consensus        44 ~~G~s~~~~~~ii~~fl~glalGs~l~~~~~~~~~~~~~~---~e~~i~l~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~  120 (521)
T PRK03612         44 LLGDSVTQFSTVIGLMLFAMGVGALLSKYLLRDAAAGFVA---VELLLALLGGLSALILYAAFAFQGLSRLLLYVLVLLI  120 (521)
T ss_pred             HhCchHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            346554433  78888888888888887776433332211   000111111111111111 111    11223444556


Q ss_pred             HHHHhhhhhhHHHHHHHhhCCCchhhHHHHHHhhhhhhHHhhhhHHHHHHHh-hhh
Q 017754          238 GLSYGAHWAIVPAAASELFGLKSFGALYNFLTLASPAGSLIFSGVIASGIYD-YYA  292 (366)
Q Consensus       238 G~~~g~~~~~~~~~~se~f~~~~~g~~~g~~~~~~~~G~~i~gp~l~G~l~d-~~~  292 (366)
                      ++..|+.+++..-+..+.. .++.|...|-++....+|+.+ |.+++|++.- ..|
T Consensus       121 ~~l~G~~~Pl~~~~~~~~~-~~~~g~~~g~ly~~ntlGa~~-G~l~~~~vLlp~lG  174 (521)
T PRK03612        121 GLLIGMEIPLLMRILQRIR-DQHLGHNVATVLAADYLGALV-GGLAFPFLLLPRLG  174 (521)
T ss_pred             HHHHHHHHHHHHHHHHhcc-ccchhhhhhhhHhHHhHHHHH-HHHHHHHHHHHhcc
Confidence            7778887776655444322 234566777778888888885 8888887654 444

>PRK15462 dipeptide/tripeptide permease D; Provisional

Probab=97.38  E-value=0.046  Score=55.51  Aligned_cols=118  Identities=14%  Similarity=0.082  Sum_probs=78.2

Q ss_pred             CCChhH-HHHHHHHHHHhhhhhhhhhhhhhhhhh-ccCchhHHHHHHHHHHHHHHHHHHh----------hhhHHHHHHH
Q 017754          167 GYADTS-IYVSMISIWNFLGRVGGGYFSEAIVRK-FAYPRPVAMAVAQVVMAFALLYYAI----------GWPGEIYVTT  234 (366)
Q Consensus       167 g~s~~~-~~vsl~~i~~~~g~~~~G~lsD~~grr-~~~~R~~~~~~~~~~~~~~~~l~~~----------~~~~~l~~~~  234 (366)
                      |++-.. .+.++-.++-.+..|+.+++=.+..+| +....+.=+.+++++++++++++..          .++.++.+..
T Consensus       305 g~~ip~~~~qslNp~~ii~l~P~~a~lw~~l~~~~~~~s~~~Kfa~g~~~~g~~f~~l~~~~~~~~~~~~~s~~wl~~~~  384 (493)
T PRK15462        305 GYTVPTAMFQSINAFAVMLCGVFLAWVVKESVAGNRTVRIWGKFALGLGLMSAGFCILTLSARWSAMYGHSSLPLMVLGL  384 (493)
T ss_pred             ceeeCHHHHHhHhHHHHHHHHHHHHHHHHHHhcCCCCCCcHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCcCHHHHHHHH
Confidence            554333 377888888888888777775666432 2222233357788888888766531          1234556666


Q ss_pred             HHHHHHHhhhhhhHHHHHHHhhCCCchhhHHHHHHhhh-hhhHHhhhhHHHH
Q 017754          235 VLVGLSYGAHWAIVPAAASELFGLKSFGALYNFLTLAS-PAGSLIFSGVIAS  285 (366)
Q Consensus       235 ~l~G~~~g~~~~~~~~~~se~f~~~~~g~~~g~~~~~~-~~G~~i~gp~l~G  285 (366)
                      ++.++|--...++..+.++++.|.+.+|..+|...+.. .+|..+ +..+++
T Consensus       385 ~~~t~gEl~~sPvgls~~~~laP~~~~g~~mg~w~l~~~~~~~~~-~g~~~~  435 (493)
T PRK15462        385 AVMGFAELFIDPVAMSQITRIEIPGVTGVLTGIYMLLSGAIANYL-AGVIAD  435 (493)
T ss_pred             HHHHHHHHHHChHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHHH-HHHHHH
Confidence            77788877777888999999999999999999986633 455553 444444

>PF11700 ATG22: Vacuole effluxer Atg22 like; InterPro: IPR024671 Autophagy is a major survival mechanism in which eukaryotes recycle cellular nutrients during stress conditions

Probab=97.29  E-value=0.023  Score=57.47  Aligned_cols=145  Identities=11%  Similarity=0.010  Sum_probs=88.8

Q ss_pred             HHHHHHHHHhhhhhhhhhhhhhhhhhccCchhHHHHHHHHHHHHHHHHHHh--hhhHHHH-HHHHHHHHHHhhhhhhHHH
Q 017754          174 YVSMISIWNFLGRVGGGYFSEAIVRKFAYPRPVAMAVAQVVMAFALLYYAI--GWPGEIY-VTTVLVGLSYGAHWAIVPA  250 (366)
Q Consensus       174 ~vsl~~i~~~~g~~~~G~lsD~~grr~~~~R~~~~~~~~~~~~~~~~l~~~--~~~~~l~-~~~~l~G~~~g~~~~~~~~  250 (366)
                      ..++..+...+-.|+.|.++|+-++|+.+     +.+..++..++.+++..  +..+.+. +..++.-++++.......+
T Consensus        75 ~~sis~l~~all~P~lGa~aD~~~~Rk~~-----l~~~~~~~~~~~~~l~~v~~~~~~~~~~l~iia~v~~~~~~vfyna  149 (477)
T PF11700_consen   75 ANSISGLLQALLAPFLGAIADYGGRRKRF-----LLIFTLLGVLATALLWFVSPGQWWLALVLFIIANVGYEASNVFYNA  149 (477)
T ss_pred             HHHHHHHHHHHHHHHHHHHHcccccchHH-----HHHHHHHHHHHHHHHHHhCcchHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            46677777888889999999998876543     33333333333333332  2222222 2223334567777788889


Q ss_pred             HHHHhhCCCch--------------------------hhHHHHHHhhhhhhHHhhhhHHHHHHH-hhhhhhhhhhhhhcc
Q 017754          251 AASELFGLKSF--------------------------GALYNFLTLASPAGSLIFSGVIASGIY-DYYAEKQAGLLWKYN  303 (366)
Q Consensus       251 ~~se~f~~~~~--------------------------g~~~g~~~~~~~~G~~i~gp~l~G~l~-d~~~~~~~~~~~~~~  303 (366)
                      +.+|+-..+.+                          +...|.....+.+|+.+ . ++...+. ...+..         
T Consensus       150 ~LP~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vS~~G~a~Gy~G~~v-~-l~i~l~~~~~~~~~---------  218 (477)
T PF11700_consen  150 YLPDLARPEPRVRAAREPSANGNISDSEYEAVDSLTRGRVSGLGWALGYIGGLV-A-LLISLLLVISPGST---------  218 (477)
T ss_pred             HhHhhcCCChhhhhhhhhhccCCCChhhhhhHHHhhhchhHHHHHHHHHHHHHH-H-HHHHHHHHHcCCCc---------
Confidence            99999998888                          88999888888888885 2 3333222 222100         


Q ss_pred             CCCCCcccCCCCCCcccCCcchHHHHHHHHHHHHHHHHHHHHHhhh
Q 017754          304 GNMLPVSFRDQETPTCLGSICYSITCGIMAGLCIIAMVMSLIVVHR  349 (366)
Q Consensus       304 ~~~~~~~~~~~~~~~c~g~~~~~~~f~i~~~~~~~~~~~~~~~~~~  349 (366)
                                     =.+..+.|.++.+.++..++..+..++..++
T Consensus       219 ---------------~~~~~~~r~~~~~~a~ww~vfsiP~~~~~~~  249 (477)
T PF11700_consen  219 ---------------ASNTWAIRVAFLIVALWWLVFSIPLFLWLPD  249 (477)
T ss_pred             ---------------cccchhhhHHHHHHHHHHHHHHHHHHHhCCC
Confidence                           0111237888888887776666655554443

Atg22, Avt3 and Avt4 are partially redundant vacuolar effluxers, which mediate the efflux of leucine and other amino acids resulting from autophagy []. This family also includes other transporter proteins.

>PF00854 PTR2: POT family; InterPro: IPR000109 This entry represents the POT (proton-dependent oligopeptide transport) family, which all appear to be proton dependent transporters

Probab=97.22  E-value=0.0017  Score=63.35  Aligned_cols=104  Identities=16%  Similarity=0.280  Sum_probs=82.6

Q ss_pred             HHHHHHHHHHHHHHHHh---h-hh------HHHHHHHHHHHHHHhhhhhhHHHHHHHhhCCC---chhhHHHHHHhhhhh
Q 017754          208 MAVAQVVMAFALLYYAI---G-WP------GEIYVTTVLVGLSYGAHWAIVPAAASELFGLK---SFGALYNFLTLASPA  274 (366)
Q Consensus       208 ~~~~~~~~~~~~~l~~~---~-~~------~~l~~~~~l~G~~~g~~~~~~~~~~se~f~~~---~~g~~~g~~~~~~~~  274 (366)
                      +.++.+++.+|++++..   . ..      ..++++..++++|.|+.=+...+..+|.|..+   ++...++....+.++
T Consensus         4 I~~g~~~~~~G~~ll~l~~~~~~~~~~~~~~~~~~gL~lia~G~G~~K~ni~~~~~dq~~~~~~~~~~~~F~~fY~~in~   83 (372)
T PF00854_consen    4 ILLGSIVYLLGHVLLTLSAIPPSLPSGIQLGLFYIGLALIAVGTGGIKPNISPFGADQYDEDDDSRRDSFFNWFYWGINI   83 (372)
T ss_dssp             HHHHHHHHHHHHHH--HHHTSSSC------CHHHHHHHHHHHHHHCCHHHHHHHHHHCSSTTTTTHHHHHHHHHHHHHHH
T ss_pred             hhHHHHHHHHHHHHhHHHHhcchhhhhHHHHHHHHHHHHHHhccccccccHHHHHHHHhcccchhhhhhhHHHHHHHHhh
Confidence            46677788888887431   1 11      36788999999999999999999999999876   377889999999999


Q ss_pred             hHHhhhhHHHHHHHhhhhhhhhhhhhhccCCCCCcccCCCCCCcccCCcchHHHHHHHHHHHHHHHHHHH
Q 017754          275 GSLIFSGVIASGIYDYYAEKQAGLLWKYNGNMLPVSFRDQETPTCLGSICYSITCGIMAGLCIIAMVMSL  344 (366)
Q Consensus       275 G~~i~gp~l~G~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~g~~~~~~~f~i~~~~~~~~~~~~~  344 (366)
                      |+++ ++.+.+++.++.+                                |...|.+.++..+++.+..+
T Consensus        84 G~~~-~~~~~~~i~~~~~--------------------------------~~~~f~i~~~~~~~~~~~f~  120 (372)
T PF00854_consen   84 GSLF-SPTLVPYIQQNYG--------------------------------WFLGFGIPAIGMLLALIVFL  120 (372)
T ss_dssp             HHHH-HHHCCCHHHHCS---------------------------------HHHHHHHHHHHHHHHHHHHH
T ss_pred             hhHh-hcccchhhccccc--------------------------------hhhhhhHHHHHHHHHHHHHH
Confidence            9996 8999999988776                                99999998877777665443

The transport of peptides into cells is a well-documented biological phenomenon which is accomplished by specific, energy-dependent transporters found in a number of organisms as diverse as bacteria and humans. The POT family of proteins is distinct from the ABC-type peptide transporters and was uncovered by sequence analyses of a number of recently discovered peptide transport proteins []. These proteins that seem to be mainly involved in the intake of small peptides with the concomitant uptake of a proton []. These integral membrane proteins are predicted to comprise twelve transmembrane regions.; GO: 0005215 transporter activity, 0006857 oligopeptide transport, 0016020 membrane; PDB: 4APS_A 2XUT_C.

>PF12832 MFS_1_like: MFS_1 like family

Probab=97.18  E-value=0.0018  Score=48.41  Aligned_cols=53  Identities=13%  Similarity=0.160  Sum_probs=43.4

Q ss_pred             hhHHHHHhcHHHHHHHhCCChhHH--HHHHHHHHHhhhhhhhhhhhhhhhhhccC
Q 017754          150 GSGLTVIDNLGQICQSLGYADTSI--YVSMISIWNFLGRVGGGYFSEAIVRKFAY  202 (366)
Q Consensus       150 ~~~~~~~~~l~~i~~~~g~s~~~~--~vsl~~i~~~~g~~~~G~lsD~~grr~~~  202 (366)
                      +....+..++|.+.++.|++..++  ..++..+...++.+++|+++||+++++..
T Consensus        14 ~~~g~~~Pfl~~~~~~~Gl~~~~iGil~~i~~~~~~~~~pl~g~laDk~~~~~~~   68 (77)
T PF12832_consen   14 AALGCLYPFLPLYLKQLGLSPSQIGILSAIRPLIRFLAPPLWGFLADKFGKRKVI   68 (77)
T ss_pred             HHHHHHHhhhhHhhhhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCccHHH
Confidence            333345677888889999998887  78888899999999999999999986544

>KOG2615 consensus Permease of the major facilitator superfamily [General function prediction only]

Probab=97.14  E-value=0.0032  Score=60.85  Aligned_cols=123  Identities=11%  Similarity=0.115  Sum_probs=85.0

Q ss_pred             HHhCCChhHH--HHHHHHHHHhhhhhhhhhhhhhhhhhccCchhHHHHHHHHHHHHHHHHHH-hhhhHHHHHHHHHHHHH
Q 017754          164 QSLGYADTSI--YVSMISIWNFLGRVGGGYFSEAIVRKFAYPRPVAMAVAQVVMAFALLYYA-IGWPGEIYVTTVLVGLS  240 (366)
Q Consensus       164 ~~~g~s~~~~--~vsl~~i~~~~g~~~~G~lsD~~grr~~~~R~~~~~~~~~~~~~~~~l~~-~~~~~~l~~~~~l~G~~  240 (366)
                      ..+||++.+.  +.+..++...+.+.......|+...    .-...+...+.++...++++. ...+..++.+..+..++
T Consensus       290 ~rfg~ss~~~G~vl~~tGl~m~~~ql~~~~~l~~~~~----~~~a~l~~~l~~~vP~~llls~~~~~~~l~~~s~l~sf~  365 (451)
T KOG2615|consen  290 GRFGYSSMQQGKVLSTTGLLMLVIQLALVPILPRYKG----NIKAVLLFSLLLIVPAFLLLSLARTPVVLYLGSTLKSFS  365 (451)
T ss_pred             CccCCChhhheeeeehhhHHHHHHHHhcccccccccc----chhhHHHHHHHHHHHHHHHHhccccchhhhHHHHHHHHH
Confidence            4578887665  5555555555555555555555431    111223444444444444444 34566788888888888


Q ss_pred             HhhhhhhHHHHHHHhhCCCchhhHHHHHHhhhhhhHHhhhhHHHHHHHhhh
Q 017754          241 YGAHWAIVPAAASELFGLKSFGALYNFLTLASPAGSLIFSGVIASGIYDYY  291 (366)
Q Consensus       241 ~g~~~~~~~~~~se~f~~~~~g~~~g~~~~~~~~G~~i~gp~l~G~l~d~~  291 (366)
                      .....+.....+....|.+.+|++.|+....+.++-++ ||.++|.+....
T Consensus       366 ~A~~vt~Lt~Lv~~~~~~~qrG~~~Gi~~Sl~alaRai-GPlv~g~i~~Ws  415 (451)
T KOG2615|consen  366 TASVVTCLTSLVHKYGPQSQRGTLNGIFRSLGALARAI-GPLVSGVIFSWS  415 (451)
T ss_pred             HHHhhHHHHHHHHhcCCcccchHHHHHHHHHHHHHHHh-hhhhhheeEEEe
Confidence            77766777778888899999999999999999999996 999999887654

>KOG4686 consensus Predicted sugar transporter [Carbohydrate transport and metabolism]

Probab=96.83  E-value=0.001  Score=61.82  Aligned_cols=149  Identities=15%  Similarity=0.131  Sum_probs=98.7

Q ss_pred             hHHHHHHHHHHhhhhHHHHHhcHHHHHHHh----CCChhHH--HHHHHHHHHhhhhhhhhhhhhhh-hhhccCchhHHHH
Q 017754          137 DFLLLFFSLVLASGSGLTVIDNLGQICQSL----GYADTSI--YVSMISIWNFLGRVGGGYFSEAI-VRKFAYPRPVAMA  209 (366)
Q Consensus       137 ~~~ll~~~~~~~~~~~~~~~~~l~~i~~~~----g~s~~~~--~vsl~~i~~~~g~~~~G~lsD~~-grr~~~~R~~~~~  209 (366)
                      +|..+.++.+.+.++...+. +-..+-.++    ..+.+..  +-+.++--|.+-..++|++.||. |.|...      .
T Consensus        42 r~m~lv~mc~lgfgsyfcyd-~p~alq~~fk~d~ni~~akftLlYsvYSwPNvVlcffgGflidr~fgir~gt------i  114 (459)
T KOG4686|consen   42 RFMALVFMCLLGFGSYFCYD-APGALQIDFKLDSNIEYAKFTLLYSVYSWPNVVLCFFGGFLIDRRFGIRLGT------I  114 (459)
T ss_pred             HHHHHHHHHHhcccceeecC-CchhhhhhhhcccccceeeeeeeeeeccCCCEEEeeecceeehhhhhhhHHH------H
Confidence            45555555555555443332 222222222    2233222  56777777888899999999974 554433      3


Q ss_pred             HHHHHHHHHHHHHHh----hhhHHHHHHHHHHHHHHhhhhhhHHHHHHHhhCCCchhhHHHHHHhhhhhhHHhhhhHHHH
Q 017754          210 VAQVVMAFALLYYAI----GWPGEIYVTTVLVGLSYGAHWAIVPAAASELFGLKSFGALYNFLTLASPAGSLIFSGVIAS  285 (366)
Q Consensus       210 ~~~~~~~~~~~l~~~----~~~~~l~~~~~l~G~~~g~~~~~~~~~~se~f~~~~~g~~~g~~~~~~~~G~~i~gp~l~G  285 (366)
                      +..++..+|.++++.    ...+.+..+++++|+|.-..-.....++.-.|..|+.+..+|+......+|+.+ .=.+.+
T Consensus       115 i~~~fv~~GqliFa~Ggi~~aFw~M~~GRF~FGIGgESlAVaQN~yav~wFKGKELn~vfGlqlSvAR~Gstv-Nf~lm~  193 (459)
T KOG4686|consen  115 ILCIFVFLGQLIFAAGGISHAFWTMLAGRFLFGIGGESLAVAQNKYAVYWFKGKELNFVFGLQLSVARLGSTV-NFLLMP  193 (459)
T ss_pred             HHHHHHHHHHHHHHhchHHHHHHHHHhhheeeccCchhhhhhhcceeEEEecCccccchhhHHHHHHHhhcee-eeeecH
Confidence            334444556666553    233567889999998865555555667888899999999999999999999986 778899


Q ss_pred             HHHhhhhh
Q 017754          286 GIYDYYAE  293 (366)
Q Consensus       286 ~l~d~~~~  293 (366)
                      ++||..++
T Consensus       194 ~ly~~~~~  201 (459)
T KOG4686|consen  194 FLYDTMGR  201 (459)
T ss_pred             HHHHHHHH
Confidence            99998763

>TIGR01272 gluP glucose/galactose transporter

Probab=96.62  E-value=0.021  Score=54.30  Aligned_cols=64  Identities=5%  Similarity=-0.052  Sum_probs=56.7

Q ss_pred             hhHHHHHHHHHHHHHHhhhhhhHHHHHHHhhCCCchhhHHHHHHhhhhhhHHhhhhHHHHHHHhh
Q 017754          226 WPGEIYVTTVLVGLSYGAHWAIVPAAASELFGLKSFGALYNFLTLASPAGSLIFSGVIASGIYDY  290 (366)
Q Consensus       226 ~~~~l~~~~~l~G~~~g~~~~~~~~~~se~f~~~~~g~~~g~~~~~~~~G~~i~gp~l~G~l~d~  290 (366)
                      +...+.++.++.|.|.+...+...++++++.++++++...|+....+.+|+.+ ||.+++.+...
T Consensus         9 ~~~~~l~~~f~~g~G~~~lq~~~n~~v~~~~~~~~~~~~l~~~~~~~~~G~~~-gP~i~~~~i~~   72 (310)
T TIGR01272         9 YYVLFLGALFVLASGLTILQVAANPYVSILGPIETAASRLALTQAFNKLGTTV-APLFGGSLILS   72 (310)
T ss_pred             HHHHHHHHHHHHHhhHHHHHhhHHHHHHHHCCcchHHHHHHHHHHHhhhHHHH-HHHHHHHHHhc
Confidence            34456778888999999999999999999999999999999999999999996 99999988854

Disruption of the loci leads to the total loss of glucose or galactose uptake in E.coli. Putative transporters in other bacterial species were isolated by functional complementation, which restored it functional activity.

>PF03137 OATP: Organic Anion Transporter Polypeptide (OATP) family; InterPro: IPR004156 This family consists of several eukaryotic Organic-Anion-Transporting Polypeptides (OATPs)

Probab=96.61  E-value=0.00051  Score=70.47  Aligned_cols=71  Identities=23%  Similarity=0.251  Sum_probs=0.0

Q ss_pred             CCHHHHhhhhhHHHHHHHHHHhhhhHHHHHhcHHHHHHH-hCCChhHH--HHHHHHH-HHhhhhhhhhhhhhhhh
Q 017754          127 FTLPQALMKADFLLLFFSLVLASGSGLTVIDNLGQICQS-LGYADTSI--YVSMISI-WNFLGRVGGGYFSEAIV  197 (366)
Q Consensus       127 ~~~~~~l~~~~~~ll~~~~~~~~~~~~~~~~~l~~i~~~-~g~s~~~~--~vsl~~i-~~~~g~~~~G~lsD~~g  197 (366)
                      ..++++++|+.|....++..+-.....++..++|.+.+. ++.+.+.+  +.....+ +.++|.+++|++..|+.
T Consensus       296 ~~l~~Ll~Np~f~~~~la~~~~~~~~~G~~tF~pKylE~QF~~sas~A~~l~G~v~ip~~~~G~llGG~ivkk~k  370 (539)
T PF03137_consen  296 KALKRLLTNPVFMCLILAGVFESFIVSGFATFLPKYLESQFGLSASQASLLTGIVSIPGAALGILLGGYIVKKFK  370 (539)
T ss_dssp             ---------------------------------------------------------------------------
T ss_pred             HHHHHHhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHhhhhcchhheehheEEEEEEEec
Confidence            457889999999888888777777777888999999875 78776554  4444444 66789999999988874

Several have been identified mostly in human and rat. Different OATPs vary in tissue distribution and substrate specificity. Since the numbering of different OATPs in particular species was based originally on the order of discovery, similarly numbered OATPs in humans and rats did not necessarily correspond in function, tissue distribution and substrate specificity (in spite of the name, some OATPs also transport organic cations and neutral molecules) so a scheme of using digits for rat OATPs and letters for human ones was introduced []. Prostaglandin transporter (PGT) proteins are also considered to be OATP family members. In addition, the methotrexate transporter OATK is closely related to OATPs. This family also includes several predicted proteins from Caenorhabditis elegans and Drosophila melanogaster. This similarity was not previously noted. Note: Members of this family are described (in the UniProtKB/Swiss-Prot database) as belonging to the SLC21 family of transporters.; GO: 0005215 transporter activity, 0006810 transport, 0016020 membrane; PDB: 3MRR_P.

>PF02487 CLN3: CLN3 protein; InterPro: IPR003492 Batten's disease, the juvenile variant of neuronal ceroid lipofuscionosis (NCL), is a recessively inherited disorder affecting children of 5-10 years of age

Probab=96.51  E-value=0.27  Score=48.46  Aligned_cols=103  Identities=20%  Similarity=0.212  Sum_probs=71.5

Q ss_pred             HHHHHHHHHhhhhhhhhhhhhhhhhhccCchhHHHHHHHHHHHHHHHHHH----hhhhHHHHHHHHHHHHHHhhhhhhHH
Q 017754          174 YVSMISIWNFLGRVGGGYFSEAIVRKFAYPRPVAMAVAQVVMAFALLYYA----IGWPGEIYVTTVLVGLSYGAHWAIVP  249 (366)
Q Consensus       174 ~vsl~~i~~~~g~~~~G~lsD~~grr~~~~R~~~~~~~~~~~~~~~~l~~----~~~~~~l~~~~~l~G~~~g~~~~~~~  249 (366)
                      +..++.++-+++|--.-.+     |   .+|.+.+.+.+.+..+.+++-+    .++.+.+++..+..|+..|+.+....
T Consensus       286 Y~~~YQ~GVFISRSS~~~~-----r---ir~lwils~LQ~~nl~~~~l~s~~~fipsi~ivf~lif~eGLlGGa~YVNtF  357 (402)
T PF02487_consen  286 YQLLYQLGVFISRSSLPFF-----R---IRRLWILSLLQVINLVFLLLQSWYRFIPSIWIVFVLIFYEGLLGGASYVNTF  357 (402)
T ss_pred             HHHHHHHHHhhhhcceeee-----e---hhhHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHhhhHHHHHHH
Confidence            6777778877777644332     1   2344555555555444333321    23445555667778999999999999


Q ss_pred             HHHHHhhCCCchhhHHHHHHhhhhhhHHhhhhHHHH
Q 017754          250 AAASELFGLKSFGALYNFLTLASPAGSLIFSGVIAS  285 (366)
Q Consensus       250 ~~~se~f~~~~~g~~~g~~~~~~~~G~~i~gp~l~G  285 (366)
                      ..++|-.++++|-.+.|...++-.+|-.+ +..++=
T Consensus       358 ~~I~~~~~~~~REFslg~vsvsds~GI~l-Agll~l  392 (402)
T PF02487_consen  358 YRISEEVPPEDREFSLGAVSVSDSLGILL-AGLLGL  392 (402)
T ss_pred             HHHHhcCCHHHHHHHHHHHHHHhhHHHHH-HHHHHH
Confidence            99999999999999999999999999885 655443

The disease is characterised by progressive loss of vision, seizures and psychomotor disturbances. Biochemically, the disease is characterised by lysosomal accumulation of hydrophobic material, mainly ATP synthase subunit C, largely in the brain but also in other tissues. The disease is fatal within a decade []. Mutations in the CLN3 gene are believed to cause Batten's disease []. The CLN3 gene, with a predicted 438-residue product, maps to chromosome p16p12.1. The gene contains at least 15 exons spanning 15kb and is highly conserved in mammals []. A 1.02kb deletion in the CLN3 gene, occurring in either one or both alleles, is found in 85% of Batten disease chromosomes causing a frameshift generating a predicted translated product of 181 amino acid residues [, ]. 22 other mutations, including deletions, insertions and point mutations, have been reported. It has been suggested that such mutations result in severely truncated CLN3 proteins, or affect its structure/conformation [, ]. CLN3 proteins, which are believed to associate in complexes, are heavily glycosylated lysosomal membrane proteins [], containing complex Asn-linked oligosaccharides []. Extensive glycosylation is important for the stability of these lysosomal proteins in the highly hydrolytic lysosomal lumen. Lysosomal sequestration of active lysosomal enzymes, transport of degraded molecules from the lysosomes, and fusion and fission between lysosomes and other organelles. The CLN3 protein is a 43kDa, highly hydrophobic, multi-transmembrane (TM), phosphorylated protein []. Hydrophobicity analysis predicts 6-9 TM segments, suggesting that CLN3 is a TM protein that may function as a chaperone or signal transducer. The majority of putative phosphorylation sites are found in the N-terminal domain, encompassing 150 residues []. Phosphorylation is believed to be important for membrane compartment interaction, in the formation of functional complexes, and in regulation and interactions with other proteins []. CLN3 contains several motifs that may undergo lipid post-translational modifications (PTMs). PTMs contribute to targeting and anchoring of modified proteins to distinct biological membranes []. There are three general classes of lipid modification: N-terminal myristoylation, C-terminal prenylation, and palmitoylation of cysteine residues. Such modifications are believed to be a common form of PTM occurring in 0.5% of all cellular proteins, including brain tissue []. The C terminus of the CLN3 contains various lipid modification sites: C435, target for prenylation; G419, target for myristoylation; and C414, target for palmitoylation []. Prenylation results in protein hydrophobicity, influences interaction with upstream regulatory proteins and downstream effectors, facilitates protein-protein interaction (multisubunit assembly) and promotes anchoring to membrane lipids. The prenylation motif, Cys-A-A-X, is highly conserved within CLN3 protein sequences of different species []. Species with known CLN3 protein homologues include: Homo sapiens, Canis familiaris, Mus musculus, Saccharomyces cerevisiae and Drosophila melanogaster.; GO: 0016020 membrane

>TIGR00769 AAA ADP/ATP carrier protein family

Probab=96.44  E-value=0.23  Score=50.08  Aligned_cols=47  Identities=11%  Similarity=0.137  Sum_probs=40.3

Q ss_pred             hhhh-hHHHHHHHhhCCCchhhHHHHHHhhhhhhHHhhhhHHHHHHHhh
Q 017754          243 AHWA-IVPAAASELFGLKSFGALYNFLTLASPAGSLIFSGVIASGIYDY  290 (366)
Q Consensus       243 ~~~~-~~~~~~se~f~~~~~g~~~g~~~~~~~~G~~i~gp~l~G~l~d~  290 (366)
                      ...+ +.++.+.|++..++..+.|+++..++++|..+ ||.+..++.+.
T Consensus       144 ~vvS~lFW~fandi~t~~qakRfy~l~~~ganlg~i~-sg~~~~~~~~~  191 (472)
T TIGR00769       144 VVLSLLFWGFANQITTIDEAKRFYALFGLGANVALIF-SGRTIKYFSKL  191 (472)
T ss_pred             HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHh
Confidence            3444 78899999999999999999999999999996 88888887653

These proteins are members of the ATP:ADP Antiporter (AAA) Family (TC 2.A.12), which consists of nucleotide transporters that have 12 GES predicted transmembrane regions. One protein from Rickettsia prowazekii functions to take up ATP from the eukaryotic cell cytoplasm into the bacterium in exchange for ADP. Five AAA family paralogues are encoded within the genome of R. prowazekii. This organism transports UMP and GMP but not CMP, and it seems likely that one or more of the AAA family paralogues are responsible. The genome of Chlamydia trachomatis encodes two AAA family members, Npt1 and Npt2, which catalyse ATP/ADP exchange and GTP, CTP, ATP and UTP uptake probably employing a proton symport mechanism. Two homologous adenylate translocators of Arabidopsis thaliana are postulated to be localized to the intracellular plastid membrane where they function as ATP importers.

>KOG3626 consensus Organic anion transporter [Secondary metabolites biosynthesis, transport and catabolism]

Probab=96.39  E-value=0.11  Score=54.71  Aligned_cols=69  Identities=17%  Similarity=0.229  Sum_probs=54.3

Q ss_pred             CHHHHhhhhhHHHHHHHHHHhhhhHHHHHhcHHHHHHH-hCCChhHH--HHHHHHH-HHhhhhhhhhhhhhhh
Q 017754          128 TLPQALMKADFLLLFFSLVLASGSGLTVIDNLGQICQS-LGYADTSI--YVSMISI-WNFLGRVGGGYFSEAI  196 (366)
Q Consensus       128 ~~~~~l~~~~~~ll~~~~~~~~~~~~~~~~~l~~i~~~-~g~s~~~~--~vsl~~i-~~~~g~~~~G~lsD~~  196 (366)
                      .++++++|+.|.+..++..+-.....++..++|.+++. +|.+.+.+  +...+.+ +..+|-+++|++.-|+
T Consensus       384 s~~~ll~N~if~~~~l~~~~~~~~~~G~~tFlPKyLE~Qfg~sas~An~l~G~i~vp~~~~Gi~lGG~iikkf  456 (735)
T KOG3626|consen  384 SIKRLLSNPIFMLVVLASVIESLAITGYITFLPKYLETQFGISASLANILTGSIGVPAAAVGIFLGGLIIKKF  456 (735)
T ss_pred             HHHHHhcCchHHHHHHHHHHHHHHHhhHHHhhHHHHHHHcCCCHHHHHHHhhhhhhhhhhhhhhccceeeeee
Confidence            47788999999988888888888888899999999965 78887665  5545544 4557888999988776

>KOG3098 consensus Uncharacterized conserved protein [Function unknown]

Probab=96.27  E-value=0.58  Score=46.99  Aligned_cols=142  Identities=14%  Similarity=0.113  Sum_probs=75.2

Q ss_pred             HHhhhhhHHHHHHHHHHhhhhHHHHHhcHHHHHH---HhCCChhHHHHHHHHH----HHhhhhhhhhhhhhhhhhhccCc
Q 017754          131 QALMKADFLLLFFSLVLASGSGLTVIDNLGQICQ---SLGYADTSIYVSMISI----WNFLGRVGGGYFSEAIVRKFAYP  203 (366)
Q Consensus       131 ~~l~~~~~~ll~~~~~~~~~~~~~~~~~l~~i~~---~~g~s~~~~~vsl~~i----~~~~g~~~~G~lsD~~grr~~~~  203 (366)
                      ++++++++.++...++.............|.-..   ..+.++.. +..+.++    +..++....+.+++|+.+.   .
T Consensus       235 ~l~~~~~ml~L~~~f~~tG~~~Sf~~~iypt~i~ft~~~~~n~~~-~~ai~~~~~g~g~v~~g~~~~~l~~rir~f---g  310 (461)
T KOG3098|consen  235 KLLKTPKMLLLFPFFFYTGLETSFWISIYPTCISFTRKLGSNTTY-LIAIYSIGIGLGEVIGGLDFSILSKRIRGF---G  310 (461)
T ss_pred             HHhcCHhHHHHHHHHHHHHHHHHHHHhccchhhhhhhhccCcchh-HHHHHHHHHhHHHHHHHHHHHHHhhhhhhc---c
Confidence            4556666666655544443332223333332221   22222221 4444444    4444555566666665332   1


Q ss_pred             hhHHHHHHHHHHHHHHHHHH--hh--h---------------hHHHHHHHHHHHHHHhhhhhhHHHHHHHhhCCCchhhH
Q 017754          204 RPVAMAVAQVVMAFALLYYA--IG--W---------------PGEIYVTTVLVGLSYGAHWAIVPAAASELFGLKSFGAL  264 (366)
Q Consensus       204 R~~~~~~~~~~~~~~~~l~~--~~--~---------------~~~l~~~~~l~G~~~g~~~~~~~~~~se~f~~~~~g~~  264 (366)
                      |...+.++.++-.+++++..  .+  .               .....+..++.|++-....+....+++..+ ++.+..+
T Consensus       311 ~~~~~~~~~~~~~~~~~li~l~~p~dap~~~t~~~~~~~~~~~~~~~ii~~l~G~~D~~~~t~~~~ii~~~~-~~~~~~~  389 (461)
T KOG3098|consen  311 RKPTVLIGIIIHLIGFLLIHLSFPNDAPLRPTDSPPLLFTPSYYLALIIGFLLGFGDACFNTQRYVIIALLY-PDDRAQA  389 (461)
T ss_pred             cCcchhHHHHHHHHHHHHHhccccccCCCCCCcccccccccchhHHHHHHHHHhhHHHHHHHHHHHHHHHHh-cCchHHH
Confidence            22233444444444443322  11  1               124456677889988888888888999999 7777777


Q ss_pred             HHHHHhhhhhhHH
Q 017754          265 YNFLTLASPAGSL  277 (366)
Q Consensus       265 ~g~~~~~~~~G~~  277 (366)
                      .++.-.-..+++.
T Consensus       390 fsi~kfyq~~~s~  402 (461)
T KOG3098|consen  390 FSLFKFYQSVASC  402 (461)
T ss_pred             HHHHHHHHHHHHH
Confidence            7777666666655

>KOG2563 consensus Permease of the major facilitator superfamily [General function prediction only]

Probab=96.26  E-value=0.069  Score=52.88  Aligned_cols=109  Identities=7%  Similarity=-0.012  Sum_probs=70.9

Q ss_pred             HHHHHHHHHhhhhhhhhhhhhhhhhhccCchhHHHHHHHHHHHHHHHHHH-hhhh---H-----HHHHHHHHHHHHHhhh
Q 017754          174 YVSMISIWNFLGRVGGGYFSEAIVRKFAYPRPVAMAVAQVVMAFALLYYA-IGWP---G-----EIYVTTVLVGLSYGAH  244 (366)
Q Consensus       174 ~vsl~~i~~~~g~~~~G~lsD~~grr~~~~R~~~~~~~~~~~~~~~~l~~-~~~~---~-----~l~~~~~l~G~~~g~~  244 (366)
                      +..++.+..+...+.+-|+.|++|-|...      .++..+.++|.++=. ...+   .     ..+.+..+.+...-..
T Consensus        84 lsmIym~v~vp~gf~~mw~ldk~GLR~a~------llgt~ln~iGa~Ir~iss~p~v~~~f~~~l~~~Gq~iaa~Aq~Fi  157 (480)
T KOG2563|consen   84 LSMIYMVVSVPFGFAAMWILDKFGLRTAL------LLGTVLNGIGAWIRLISSLPFVPPLFRRPLTHTGQSIAAAAQPFI  157 (480)
T ss_pred             HHHHHHHHHHHHhhHHHHhhcccchHHHH------HHHHHHHHHHHHHhhhccCccccccchhhhhHHhHHHHHHhhhHh
Confidence            55566777777888889999999987655      677777777776622 2222   1     2233444444332222


Q ss_pred             hhhHHH-HHHHhhCCCchhhHHHHHHhhhhhhHHhhhhHHHHHHHhh
Q 017754          245 WAIVPA-AASELFGLKSFGALYNFLTLASPAGSLIFSGVIASGIYDY  290 (366)
Q Consensus       245 ~~~~~~-~~se~f~~~~~g~~~g~~~~~~~~G~~i~gp~l~G~l~d~  290 (366)
                       -..|+ +.+-+|++++|+++..+..+++++|..+ |-++...+..+
T Consensus       158 -m~lPskiA~~WF~~~qra~A~~~~v~~n~LGvav-g~llppilV~~  202 (480)
T KOG2563|consen  158 -LGLPSKIAAVWFPPDQRAIATVLGVMGNPLGVAV-GFLLPPILVPS  202 (480)
T ss_pred             -hccccHHHHhhCCcchhhhhhhHHHhcchHHHHH-HhhccceecCC
Confidence             22233 5567799999999999999999998885 65555555443

>COG2270 Permeases of the major facilitator superfamily [General function prediction only]

Probab=96.00  E-value=0.078  Score=52.10  Aligned_cols=152  Identities=10%  Similarity=-0.045  Sum_probs=90.9

Q ss_pred             HHHHHHHHHhhhhhhhhhhhhhhhhhccCchhHHHHHHHHHHHHHHHHHH--hh-hhH-HHHHHHHHHHHHHhhhhhhHH
Q 017754          174 YVSMISIWNFLGRVGGGYFSEAIVRKFAYPRPVAMAVAQVVMAFALLYYA--IG-WPG-EIYVTTVLVGLSYGAHWAIVP  249 (366)
Q Consensus       174 ~vsl~~i~~~~g~~~~G~lsD~~grr~~~~R~~~~~~~~~~~~~~~~l~~--~~-~~~-~l~~~~~l~G~~~g~~~~~~~  249 (366)
                      ..++..+..++-.|..|.++|+.|+|+..     +.....+..+..+++.  .+ ++. ...+..++...++........
T Consensus        63 ~~aia~llia~LapiLG~iaD~~g~Rk~~-----~~~f~~i~i~~~~~L~~i~~~s~~~~~l~~~il~~i~~~~s~Vfyd  137 (438)
T COG2270          63 ASAIAGLLIALLAPILGTIADYPGPRKKF-----FGFFTAIGIISTFLLWFIPPGSYLLLLLLFLILASIGFEFSNVFYD  137 (438)
T ss_pred             HHHHHHHHHHHHHHHhhhhhccCCCcchH-----HHHHHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHHhcchhheehh
Confidence            45566666777788889999999986654     2333334333333333  22 222 334445556677777778888


Q ss_pred             HHHHHhhCCCchhhHHHHHHhhhhhhHHhhhhHHHHHHH---h-hhhhhhhhhhhhccCCCCCcccCCCCCCcccCCcch
Q 017754          250 AAASELFGLKSFGALYNFLTLASPAGSLIFSGVIASGIY---D-YYAEKQAGLLWKYNGNMLPVSFRDQETPTCLGSICY  325 (366)
Q Consensus       250 ~~~se~f~~~~~g~~~g~~~~~~~~G~~i~gp~l~G~l~---d-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~g~~~~  325 (366)
                      ++.+++..+++.+...|+......+|+.+  +.+.....   . .++..+.     ..+            +.-.-...-
T Consensus       138 s~L~~~~~k~~~~riS~lg~~~gylgs~i--~li~~~~~~~~~~~~~~~~~-----l~~------------l~~~~~~~~  198 (438)
T COG2270         138 SMLPRLTTKDNMGRISGLGWALGYLGSVI--LLIFVVLGFALGQQTGITII-----LLG------------LPPADGEDV  198 (438)
T ss_pred             hHhhhhcCccccCcccccccccccccchH--HHHHHHHHHhcccccceeEE-----eec------------cCccccccc
Confidence            99999999988888888877778888875  44443221   1 1111110     000            000011135


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHhhh
Q 017754          326 SITCGIMAGLCIIAMVMSLIVVHR  349 (366)
Q Consensus       326 ~~~f~i~~~~~~~~~~~~~~~~~~  349 (366)
                      |.++.+.++..++-.+..+...++
T Consensus       199 ri~~~l~A~W~li~~iPm~~~v~~  222 (438)
T COG2270         199 RITGLLAALWWLLFALPMILNVHD  222 (438)
T ss_pred             hhHHHHHHHHHHHHHhHHHhcccc
Confidence            788888888888877777665443

>PF01770 Folate_carrier: Reduced folate carrier; InterPro: IPR002666 The reduced folate carrier (a transmembrane glycoprotein) transports reduced folate into mammalian cells via the carrier mediated mechanism (as opposed to the receptor mediated mechanism) it also transports cytotoxic folate analogues used in chemotherapy [], such as methotrexate (MTX)

Probab=95.97  E-value=0.51  Score=46.65  Aligned_cols=93  Identities=13%  Similarity=0.118  Sum_probs=56.5

Q ss_pred             HHHHHHHHHhhhhhhhhhhhhhhhhhccCchhHHHHHHHHHHHHHHHHHH-hhhhHHHHHHHHHHHHHHhhhhhhHHHHH
Q 017754          174 YVSMISIWNFLGRVGGGYFSEAIVRKFAYPRPVAMAVAQVVMAFALLYYA-IGWPGEIYVTTVLVGLSYGAHWAIVPAAA  252 (366)
Q Consensus       174 ~vsl~~i~~~~g~~~~G~lsD~~grr~~~~R~~~~~~~~~~~~~~~~l~~-~~~~~~l~~~~~l~G~~~g~~~~~~~~~~  252 (366)
                      .-+...+.+.++.+..|++..++.+.    ....+.+..++.+..+++.. ..+.+..|++.++++..+-...++...-+
T Consensus       290 VeA~~tllgA~~al~~g~v~~~w~~~----~~l~l~~~S~l~a~~L~lm~~t~~Iwv~Y~~yIif~~~y~fliTiA~~qI  365 (412)
T PF01770_consen  290 VEAASTLLGAIAALLAGYVKVNWDRW----GELALGVFSLLQAGLLFLMSFTGNIWVCYAGYIIFRSLYMFLITIASFQI  365 (412)
T ss_pred             HHHHHHHHHHHHHHHHhHhhcchHHH----HHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            44455566677777888874444431    12233333344444444444 34556778888888877777667766666


Q ss_pred             HHhhCCCchhhHHHHHHh
Q 017754          253 SELFGLKSFGALYNFLTL  270 (366)
Q Consensus       253 se~f~~~~~g~~~g~~~~  270 (366)
                      +.....+.+|..+|+-++
T Consensus       366 A~~l~~e~yaLVFGiNtf  383 (412)
T PF01770_consen  366 AKNLSEERYALVFGINTF  383 (412)
T ss_pred             HHhccccceeeeeeeHHH
Confidence            776777788888876444

Mammalian cells have an absolute requirement for exogenous folates which are needed for growth, and biosynthesis of macromolecules [].; GO: 0005542 folic acid binding, 0008518 reduced folate carrier activity, 0006810 transport, 0016020 membrane

>PF03137 OATP: Organic Anion Transporter Polypeptide (OATP) family; InterPro: IPR004156 This family consists of several eukaryotic Organic-Anion-Transporting Polypeptides (OATPs)

Probab=95.88  E-value=0.0014  Score=67.28  Aligned_cols=129  Identities=16%  Similarity=0.146  Sum_probs=2.5

Q ss_pred             HHhcHHHHHHHhCCChhHH--HHHHHHHHHhhhhhhhhhhhhhhhhhccCchhHHHHHHHHHHHHHHHHHHhhh------
Q 017754          155 VIDNLGQICQSLGYADTSI--YVSMISIWNFLGRVGGGYFSEAIVRKFAYPRPVAMAVAQVVMAFALLYYAIGW------  226 (366)
Q Consensus       155 ~~~~l~~i~~~~g~s~~~~--~vsl~~i~~~~g~~~~G~lsD~~grr~~~~R~~~~~~~~~~~~~~~~l~~~~~------  226 (366)
                      +...+.++-+.++++++++  +.+.+-+++.+..++..++.+|.      .||.|+..+.+++++|.++++.++      
T Consensus        22 ~~~~lttiErRF~l~S~~~G~i~s~~di~~~~~~~~vsy~g~~~------hrprwig~g~~~~~~g~~l~~lPhf~~~~y   95 (539)
T PF03137_consen   22 VNSSLTTIERRFGLSSSQSGLISSSYDIGSLVVVLFVSYFGGRG------HRPRWIGIGALLMGLGSLLFALPHFLSGPY   95 (539)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             HHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHhhhc------CCcceeeecHHHHHHHHHHHhccHhhcCCC
Confidence            3345667778889988776  77777788888777777776553      355666888888888877753211      


Q ss_pred             ---------------------------------------------hHHHHHHHHHHHHHHhhhhhhHHHHHHHhhCCCch
Q 017754          227 ---------------------------------------------PGEIYVTTVLVGLSYGAHWAIVPAAASELFGLKSF  261 (366)
Q Consensus       227 ---------------------------------------------~~~l~~~~~l~G~~~g~~~~~~~~~~se~f~~~~~  261 (366)
                                                                   ...++++-++.|+|....+++..+++=|..++++.
T Consensus        96 ~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~gq~l~GiG~~pl~tLG~tYiDDnv~~~~s  175 (539)
T PF03137_consen   96 SYEEASNSNGNSSISSNLCDSSSSSQASSDCQDCCSSSSSSLSGYFYVFILGQLLIGIGATPLYTLGITYIDDNVSKKNS  175 (539)
T ss_dssp             --------------------------------------------------------SSS---------------------
T ss_pred             ccccccccccccccccccccccccccccCccccccccccccchHHHHHHHHHHHHHhccccCCccceeeeeccccccccC
Confidence                                                         01234456677888888899999999999999998


Q ss_pred             hhHHHHHHhhhhhhHHhhhhHHHHHHHhh
Q 017754          262 GALYNFLTLASPAGSLIFSGVIASGIYDY  290 (366)
Q Consensus       262 g~~~g~~~~~~~~G~~i~gp~l~G~l~d~  290 (366)
                      +...|++.....+|..+ |=.++|.+...
T Consensus       176 plYiGi~~~~~~lGPa~-Gf~lg~~~L~~  203 (539)
T PF03137_consen  176 PLYIGILYAMSILGPAL-GFLLGSFCLRI  203 (539)
T ss_dssp             -----------------------------
T ss_pred             ccchhhhhHHhhccHHH-HHHHHHHHHhc
Confidence            88889988888888874 65566655443

Several have been identified mostly in human and rat. Different OATPs vary in tissue distribution and substrate specificity. Since the numbering of different OATPs in particular species was based originally on the order of discovery, similarly numbered OATPs in humans and rats did not necessarily correspond in function, tissue distribution and substrate specificity (in spite of the name, some OATPs also transport organic cations and neutral molecules) so a scheme of using digits for rat OATPs and letters for human ones was introduced []. Prostaglandin transporter (PGT) proteins are also considered to be OATP family members. In addition, the methotrexate transporter OATK is closely related to OATPs. This family also includes several predicted proteins from Caenorhabditis elegans and Drosophila melanogaster. This similarity was not previously noted. Note: Members of this family are described (in the UniProtKB/Swiss-Prot database) as belonging to the SLC21 family of transporters.; GO: 0005215 transporter activity, 0006810 transport, 0016020 membrane; PDB: 3MRR_P.

>TIGR00939 2a57 Equilibrative Nucleoside Transporter (ENT)

Probab=95.86  E-value=0.11  Score=51.88  Aligned_cols=103  Identities=13%  Similarity=0.120  Sum_probs=61.9

Q ss_pred             HHHHHHHHHhhhhhhhhhhhhhhhhhccCchhHH-HHHHHHHHHHHHHHHHh----------hhhHHHHHHHHHHHHHHh
Q 017754          174 YVSMISIWNFLGRVGGGYFSEAIVRKFAYPRPVA-MAVAQVVMAFALLYYAI----------GWPGEIYVTTVLVGLSYG  242 (366)
Q Consensus       174 ~vsl~~i~~~~g~~~~G~lsD~~grr~~~~R~~~-~~~~~~~~~~~~~l~~~----------~~~~~l~~~~~l~G~~~g  242 (366)
                      ...+++++..+||.+..+.. .-.+|   +|.++ ..++=+++...+++...          .+....++..+++|+..|
T Consensus       312 ~~~~fNvgD~vGR~~~~~~~-~p~~~---~~~l~i~s~~R~iFIPlf~lcn~~~~~~~p~~~~~d~~~~~~~~l~gltnG  387 (437)
T TIGR00939       312 CFLLFNLFDWLGRSLTSKFM-WPDED---SRWLPILSFLRVLFIPLFLLCNYPQRSRLPVFFPGDAYFIILMLLFGFSNG  387 (437)
T ss_pred             HHHHHHHHHHHHhhhhheeE-eeCCC---ccchHHHHHHHHHHHHHHHHhcCCccccCCeeecccHHHHHHHHHHHHhhh
Confidence            78888999999999665431 11111   11122 12222333333333221          233445667788899888


Q ss_pred             hhhhhHHHHHHHhhCCCchhhHHHHHHhhhhhhHHhhhh
Q 017754          243 AHWAIVPAAASELFGLKSFGALYNFLTLASPAGSLIFSG  281 (366)
Q Consensus       243 ~~~~~~~~~~se~f~~~~~g~~~g~~~~~~~~G~~i~gp  281 (366)
                      -..++.....++...++++-.+-+++..+..+|-.+ |.
T Consensus       388 y~~s~~m~~~p~~v~~~e~e~aG~~~~~~l~~Gl~~-Gs  425 (437)
T TIGR00939       388 YLGSLSMCLAPRQVDPHEREVAGALMVIFLLVGLAL-GA  425 (437)
T ss_pred             HHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHHHH-HH
Confidence            777777777777777777877777777777776664 44

>COG3104 PTR2 Dipeptide/tripeptide permease [Amino acid transport and metabolism]

Probab=95.85  E-value=0.66  Score=46.68  Aligned_cols=119  Identities=13%  Similarity=0.094  Sum_probs=81.0

Q ss_pred             hCCChhHH-HHHHHHHHHhhhhhhhhhhhhhhhhhccCchh-HHHHHHHHHHHHHHHHHHhh-----------hhHHHHH
Q 017754          166 LGYADTSI-YVSMISIWNFLGRVGGGYFSEAIVRKFAYPRP-VAMAVAQVVMAFALLYYAIG-----------WPGEIYV  232 (366)
Q Consensus       166 ~g~s~~~~-~vsl~~i~~~~g~~~~G~lsD~~grr~~~~R~-~~~~~~~~~~~~~~~l~~~~-----------~~~~l~~  232 (366)
                      +|++-... +-++-.++-.+..|+..++--+.++++.-+|. .-+.+++.+++.+++++...           +...++.
T Consensus       320 ~g~~vp~~~fQslNp~~Iii~~pI~a~l~~~l~~~~~~ps~~~KFalGl~l~g~~fl~l~~~~~~~~~~~~~~s~~~lil  399 (498)
T COG3104         320 FGFEVPPAWFQSLNPFFIILFSPILAALWTKLGRGNKQPSTPIKFALGLILAGLGFLILLLAGIWFGGPSGLVSVWWLVL  399 (498)
T ss_pred             cceecCHHHHHhhCHHHHHHHHHHHHHHHhHhhcCCCCCCcchHHHHHHHHHHHHHHHHHHHHHhhcCCCCCcCHHHHHH
Confidence            34443333 78888888888888888887787666544443 34567777777777665421           1235566


Q ss_pred             HHHHHHHHHhhhhhhHHHHHHHhhCCCchhhHHHHHHhhhhhhHHhhhhHHHH
Q 017754          233 TTVLVGLSYGAHWAIVPAAASELFGLKSFGALYNFLTLASPAGSLIFSGVIAS  285 (366)
Q Consensus       233 ~~~l~G~~~g~~~~~~~~~~se~f~~~~~g~~~g~~~~~~~~G~~i~gp~l~G  285 (366)
                      ..++.++|--...++.-+.+..+-|+.-.+...+...+....|..+ +..+++
T Consensus       400 ~y~l~s~gEL~iSpvGLs~~t~laP~~~~s~~ma~wfLt~a~~~~l-~g~va~  451 (498)
T COG3104         400 SYVLQSFGELFISPVGLSMVTKLAPPALKSFIMAMWFLTVAAGQTL-GGQVAG  451 (498)
T ss_pred             HHHHHHHHHHHhCHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHh-hceecc
Confidence            6777788766666777778888888877777888877777777775 666655

>KOG2816 consensus Predicted transporter ADD1 (major facilitator superfamily) [General function prediction only]

Probab=95.39  E-value=0.18  Score=50.77  Aligned_cols=120  Identities=16%  Similarity=0.229  Sum_probs=92.3

Q ss_pred             HhCCChhHH--HHHHHHHHHhhhhhhhh-hhhhhhhhhccCchhHHHHHHHHHHHHHHHHHHhhhh-HHHHHHHHHHHHH
Q 017754          165 SLGYADTSI--YVSMISIWNFLGRVGGG-YFSEAIVRKFAYPRPVAMAVAQVVMAFALLYYAIGWP-GEIYVTTVLVGLS  240 (366)
Q Consensus       165 ~~g~s~~~~--~vsl~~i~~~~g~~~~G-~lsD~~grr~~~~R~~~~~~~~~~~~~~~~l~~~~~~-~~l~~~~~l~G~~  240 (366)
                      .+|++..+.  +.++.++.+.++.++.. .++-.++.|+..      ..++....+..+++++.+. +.++...++.+ .
T Consensus       271 ~f~w~~~~~s~~~~~~~~~~~i~~l~~~~~l~~~l~~~~~i------~lGl~~~~~~~~~~af~~~~w~~~~~~v~~~-~  343 (463)
T KOG2816|consen  271 KFGWNKKEFSDLLSLVSILGIISQLLLLPLLSSILGEKRLI------SLGLLSEFLQLLLFAFATETWMMFAAGVVVA-L  343 (463)
T ss_pred             ecCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHh------hHHHHHHHHHHHHHHHhccchhhhHHHHHHH-h
Confidence            368877665  78888888888887765 677777776533      7788888888888886544 44455554444 4


Q ss_pred             HhhhhhhHHHHHHHhhCCCchhhHHHHHHhhhhhhHHhhhhHHHHHHHhhhh
Q 017754          241 YGAHWAIVPAAASELFGLKSFGALYNFLTLASPAGSLIFSGVIASGIYDYYA  292 (366)
Q Consensus       241 ~g~~~~~~~~~~se~f~~~~~g~~~g~~~~~~~~G~~i~gp~l~G~l~d~~~  292 (366)
                      .+...+..-+.++-+.+.+++|+.+++......+.+.+ +|.+.+.++..+.
T Consensus       344 ~~~~~pa~~s~~s~~v~~~e~g~v~~~is~i~~l~~~~-~~~~~~~i~~~t~  394 (463)
T KOG2816|consen  344 AGIVFPAIRAFASILVSPEEQGKVFGIISGIEGLSGVV-SPALYGNIFALTL  394 (463)
T ss_pred             hcchhHHHHhHHHhhcccccccchhhHHHHHHHHhhhh-hHHHHHHHHHHHH
Confidence            45667888889999999999999999999999999996 8999999988775

>KOG1237 consensus H+/oligopeptide symporter [Amino acid transport and metabolism]

Probab=95.14  E-value=0.23  Score=51.37  Aligned_cols=150  Identities=16%  Similarity=0.246  Sum_probs=98.5

Q ss_pred             hcHHHHHHHhCCChhHH--HHHHHHHHHhhhhhhhhhhhhhh-hhhccCchhHHHHHHHHHHHHHHHHHHh----h----
Q 017754          157 DNLGQICQSLGYADTSI--YVSMISIWNFLGRVGGGYFSEAI-VRKFAYPRPVAMAVAQVVMAFALLYYAI----G----  225 (366)
Q Consensus       157 ~~l~~i~~~~g~s~~~~--~vsl~~i~~~~g~~~~G~lsD~~-grr~~~~R~~~~~~~~~~~~~~~~l~~~----~----  225 (366)
                      +.+.++...++.+...+  .+..++-..+...+++++++|.+ ||-+.+      .++.++..+|..++..    .    
T Consensus        59 nlv~ylt~~~~~~~~~aa~~v~~f~G~~~~~~l~g~~laD~f~gry~tI------~~~s~i~~~G~~~lt~~a~~~~l~p  132 (571)
T KOG1237|consen   59 NLVTYLTLELHASGGGAANNVNAFGGTQFLLPLLGAFLADSFLGRYFTI------NIGSLISLLGLFGLTLSAMIPALLP  132 (571)
T ss_pred             HHHHHHHHHhccchHHHHHHHHHHhhHHHHHHHHHHHHHHHHhHHHHHH------HHHHHHHHHHHHHHHHHHHhhhcCC
Confidence            33444556677766544  77888877888889999999987 554333      4444444444333210    0    


Q ss_pred             -------h-----------hHHHHHHHHHHHHHHhhhhhhHHHHHHHhhC---CC---chhhHHHHHHhhhhhhHHhhhh
Q 017754          226 -------W-----------PGEIYVTTVLVGLSYGAHWAIVPAAASELFG---LK---SFGALYNFLTLASPAGSLIFSG  281 (366)
Q Consensus       226 -------~-----------~~~l~~~~~l~G~~~g~~~~~~~~~~se~f~---~~---~~g~~~g~~~~~~~~G~~i~gp  281 (366)
                             .           ...++.+..+..+|.|+.-+...+.-+|-|+   ++   ....-++.......+|..+ +.
T Consensus       133 ~~~~~~~~~~~c~~~s~~q~~~~~~~l~lia~G~gg~r~~~~~fGadQfd~~~~~~~~~~~~fFnW~yf~~~~g~l~-a~  211 (571)
T KOG1237|consen  133 FMCKFKPGGNVCESPSKLQLAVLYGALYLIALGAGGIRPCLLAFGADQFDELDPVEVKGIPSFFNWFYFSQNGGALL-AQ  211 (571)
T ss_pred             ccccCCCCCCcccCcchHHHHHHHHHHHHheeccCCCCCcchhhcccccCccCcchhhCcccchhHHHHHHHHHHHH-HH
Confidence                   0           0145566666777888888888888899998   22   2447788888888899886 65


Q ss_pred             HHHHHHHhhhhhhhhhhhhhccCCCCCcccCCCCCCcccCCcchHHHHHHHHHHHHHHHHHHHH
Q 017754          282 VIASGIYDYYAEKQAGLLWKYNGNMLPVSFRDQETPTCLGSICYSITCGIMAGLCIIAMVMSLI  345 (366)
Q Consensus       282 ~l~G~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~g~~~~~~~f~i~~~~~~~~~~~~~~  345 (366)
                      .+.-++-|..+                                |...|.+..++.+++.++.+.
T Consensus       212 t~~vyiq~~~~--------------------------------w~lgf~i~~~~~~lai~iF~~  243 (571)
T KOG1237|consen  212 TVLVYIQDNVG--------------------------------WKLGFGIPTVLNALAILIFLP  243 (571)
T ss_pred             HHHHhhhhccc--------------------------------ceeeccHHHHHHHHHHHHHHc
Confidence            55555544443                                999999988877776655544

>PF06963 FPN1: Ferroportin1 (FPN1); InterPro: IPR009716 This entry represents the solute carrier family 40 member 1 family of proteins, also known as Ferroportin 1

Probab=94.89  E-value=4.7  Score=40.32  Aligned_cols=65  Identities=17%  Similarity=-0.014  Sum_probs=37.6

Q ss_pred             HHHHHHHHHHhhhhHHHHHhcHHHHHHHhCC-C--hhHHHHHHHHHHHhhhhhhhhhhhhhhhhhccC
Q 017754          138 FLLLFFSLVLASGSGLTVIDNLGQICQSLGY-A--DTSIYVSMISIWNFLGRVGGGYFSEAIVRKFAY  202 (366)
Q Consensus       138 ~~ll~~~~~~~~~~~~~~~~~l~~i~~~~g~-s--~~~~~vsl~~i~~~~g~~~~G~lsD~~grr~~~  202 (366)
                      .|.++.+.++.....-+.-+..|.++.+..- +  ....+.-.-++..++..+..|...||..|.+..
T Consensus         4 ~~~Ly~sh~ls~w~dR~w~Fa~~L~L~~i~p~sLl~~siygl~~~~~~~~f~~~vG~~iD~~~Rl~~~   71 (432)
T PF06963_consen    4 LWRLYLSHFLSTWGDRMWEFAVPLFLISIFPGSLLPVSIYGLVRSLSAILFGPWVGRWIDRSPRLKVI   71 (432)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHhhHHHHHHHhCCcchhhH
Confidence            4556666666666555566666666666521 1  112233333444555666677788998877665

It is thought to be involved in iron export from duodenal epithelial cells and also in transfer of iron between maternal and fetal circulation. This family of proteins is known to be localised in the basolateral membrane of polarized epithelial cells [].; GO: 0005381 iron ion transmembrane transporter activity, 0034755 iron ion transmembrane transport, 0016021 integral to membrane

>PF01770 Folate_carrier: Reduced folate carrier; InterPro: IPR002666 The reduced folate carrier (a transmembrane glycoprotein) transports reduced folate into mammalian cells via the carrier mediated mechanism (as opposed to the receptor mediated mechanism) it also transports cytotoxic folate analogues used in chemotherapy [], such as methotrexate (MTX)

Probab=94.80  E-value=1.2  Score=43.95  Aligned_cols=149  Identities=9%  Similarity=0.066  Sum_probs=90.4

Q ss_pred             hCCChhHHHHHHHHH---HHhhhhhhhhhhhhhhhhhccCchhHHHHHHHHHHHHHHHHHH-hhhhHHHHHHHHHHHHHH
Q 017754          166 LGYADTSIYVSMISI---WNFLGRVGGGYFSEAIVRKFAYPRPVAMAVAQVVMAFALLYYA-IGWPGEIYVTTVLVGLSY  241 (366)
Q Consensus       166 ~g~s~~~~~vsl~~i---~~~~g~~~~G~lsD~~grr~~~~R~~~~~~~~~~~~~~~~l~~-~~~~~~l~~~~~l~G~~~  241 (366)
                      .|++..+..--++.+   .....-+....++|.++-|+..      .+..+...+...++. ..+...+-+.-++.|++.
T Consensus        35 kn~T~~qv~~~i~Pv~tYSyl~~l~~vflltd~l~Ykpvi------il~~~~~i~t~~lll~~~sv~~mq~~q~~yg~~~  108 (412)
T PF01770_consen   35 KNFTEEQVNNEIYPVWTYSYLAFLLPVFLLTDYLRYKPVI------ILQALSYIITWLLLLFGTSVLAMQLMQFFYGLAT  108 (412)
T ss_pred             cCCCHHHHHHhhhhHHHHHHHHHHHHHHHHHHHhhhhHHH------HHHHHHHHHHHHHHHHHCcHHHHHHHHHHHHHHH
Confidence            678776652112211   1233445678899999876544      333333333333333 333445556666777766


Q ss_pred             hhhhhhHHHHHHHhhCCCchhhHHHHHHhhhhhhHHhhhhHHHHHHHhhhhhhhhhhhhhccCCCCCcccCCCCCCcccC
Q 017754          242 GAHWAIVPAAASELFGLKSFGALYNFLTLASPAGSLIFSGVIASGIYDYYAEKQAGLLWKYNGNMLPVSFRDQETPTCLG  321 (366)
Q Consensus       242 g~~~~~~~~~~se~f~~~~~g~~~g~~~~~~~~G~~i~gp~l~G~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~g  321 (366)
                      ++ -...++++=...+++++.++.+....+.-+|..+ |..++-.+....+.                            
T Consensus       109 a~-evay~sYiys~v~~~~yq~vts~~raa~l~g~~~-s~~lgQllvs~~~~----------------------------  158 (412)
T PF01770_consen  109 AA-EVAYYSYIYSVVDKEHYQKVTSYTRAATLVGRFI-SSLLGQLLVSFGGV----------------------------  158 (412)
T ss_pred             HH-HHHHHHHheeecCHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHhcCC----------------------------
Confidence            55 3445555555567888999998888888788775 66665555553331                            


Q ss_pred             CcchHHHHHHHHHHHHHHHHHHHHHhhhchH
Q 017754          322 SICYSITCGIMAGLCIIAMVMSLIVVHRTKS  352 (366)
Q Consensus       322 ~~~~~~~f~i~~~~~~~~~~~~~~~~~~~r~  352 (366)
                        +|...+++..+...++++.++++....|.
T Consensus       159 --sy~~L~~isl~~~~~a~~~~~fLP~~~~S  187 (412)
T PF01770_consen  159 --SYFQLNYISLASVSLALLIALFLPMPKRS  187 (412)
T ss_pred             --CHHHHHHHHHHHHHHHHHHHHHcCCCCcc
Confidence              38888888887777778777777655443

Mammalian cells have an absolute requirement for exogenous folates which are needed for growth, and biosynthesis of macromolecules [].; GO: 0005542 folic acid binding, 0008518 reduced folate carrier activity, 0006810 transport, 0016020 membrane

>KOG3626 consensus Organic anion transporter [Secondary metabolites biosynthesis, transport and catabolism]

Probab=94.75  E-value=0.12  Score=54.30  Aligned_cols=174  Identities=16%  Similarity=0.171  Sum_probs=111.6

Q ss_pred             HHhcHHHHHHHhCCChhHH--HHHHHHHHHhhhhhhhhhhhhhhhhhccCchhHHHHHHHHHHHHHHHHHHhhh------
Q 017754          155 VIDNLGQICQSLGYADTSI--YVSMISIWNFLGRVGGGYFSEAIVRKFAYPRPVAMAVAQVVMAFALLYYAIGW------  226 (366)
Q Consensus       155 ~~~~l~~i~~~~g~s~~~~--~vsl~~i~~~~g~~~~G~lsD~~grr~~~~R~~~~~~~~~~~~~~~~l~~~~~------  226 (366)
                      +...+.++=+.++++++..  +.+.+-+++.+.-.+..|..-|..|      +.++..+.++++++.++.+.++      
T Consensus       116 ~~s~IttiErRF~i~Ss~sG~I~s~~dig~~l~i~fVsYfG~r~Hr------Pr~Ig~G~~~m~lgsll~alPHf~~~~y  189 (735)
T KOG3626|consen  116 FNSVITTIERRFKISSSQSGLIASSYDIGNLLLIIFVSYFGSRGHR------PRWIGIGLVLMGLGSLLFALPHFFSGPY  189 (735)
T ss_pred             hhhhhhhhhhhcCCCCCcceeEeeecccchhhhhHhHHHhccccCc------cceeeechhHHHHHHHHHhChHHhcCcc
Confidence            3344555666688877665  6677778888877777777666533      3344677777777766653220      


Q ss_pred             ----------------------------------------------hH-HHHHHHHHHHHHHhhhhhhHHHHHHHhhCCC
Q 017754          227 ----------------------------------------------PG-EIYVTTVLVGLSYGAHWAIVPAAASELFGLK  259 (366)
Q Consensus       227 ----------------------------------------------~~-~l~~~~~l~G~~~g~~~~~~~~~~se~f~~~  259 (366)
                                                                    +. .++++-++.|+|....+++..+++=|....+
T Consensus       190 ~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~llff~~q~l~GIG~Tpi~tlGisYiDDnvk~~  269 (735)
T KOG3626|consen  190 EYELEVIKQSVENPSSSLSFCCCNKSTNLCRPSPENSKREKESTSYPFLLFFLGQLLLGIGATPIFTLGISYIDDNVKKK  269 (735)
T ss_pred             hhhhhhhhccccCCccccchhhccCCccccCCCCCcccccccCCchhHHHHHHHHHHhhcCCCCCccCCCcccccccccc
Confidence                                                          11 2334556778888888888889999999999


Q ss_pred             chhhHHHHHHhhhhhhHHhhhhHHHHHHHhhhhhh-hhhhhhhccCCCCCcccCCCCCCcccCCcchHHHHHHHHHHHHH
Q 017754          260 SFGALYNFLTLASPAGSLIFSGVIASGIYDYYAEK-QAGLLWKYNGNMLPVSFRDQETPTCLGSICYSITCGIMAGLCII  338 (366)
Q Consensus       260 ~~g~~~g~~~~~~~~G~~i~gp~l~G~l~d~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~c~g~~~~~~~f~i~~~~~~~  338 (366)
                      +-....|++.....+|.++ |=++++++...+... +.          .+ .. ...+..=.|  .|...|++.+++.++
T Consensus       270 ~SplYlgi~~~~~~lGPai-GfllgS~~l~lYvD~~~~----------~~-~i-t~~DPrWIG--AWWlGFLi~g~~~~~  334 (735)
T KOG3626|consen  270 NSPLYLGILYSMAILGPAI-GFLLGSFCLKLYVDFGLS----------PI-GI-TPTDPRWIG--AWWLGFLICGALLLF  334 (735)
T ss_pred             CCcHHHHHHHHHHHhhhHH-HHHHHHHHHHeeeccccC----------CC-CC-CCCCcchhh--HHHHHHHHHHHHHHH
Confidence            9888899998888888885 766677665554311 00          00 00 000111111  377888888888888


Q ss_pred             HHHHHHHHhhh
Q 017754          339 AMVMSLIVVHR  349 (366)
Q Consensus       339 ~~~~~~~~~~~  349 (366)
                      .++..+.+.+.
T Consensus       335 ~a~p~f~fPk~  345 (735)
T KOG3626|consen  335 SAVPLFFFPKE  345 (735)
T ss_pred             HHHHHHhCccc
Confidence            88777766554

>PF07672 MFS_Mycoplasma: Mycoplasma MFS transporter; InterPro: IPR011699 These proteins share some similarity with members of the Major Facilitator Superfamily (MFS)

Probab=94.59  E-value=3.4  Score=38.26  Aligned_cols=25  Identities=16%  Similarity=0.421  Sum_probs=17.7

Q ss_pred             hHHHHHHHHHHHHHHHhhhhhhhhc
Q 017754           15 QNVLTVLAVGLIIIILLPVTIPVVL   39 (366)
Q Consensus        15 ~~~~~~~~~~~~~ll~~pl~~~~~~   39 (366)
                      +.-+..+..++.++.++|+++....
T Consensus        37 ~~~W~~I~si~~lL~~IpLIly~if   61 (267)
T PF07672_consen   37 TNNWQWILSIFILLIFIPLILYIIF   61 (267)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            3345667777778888888887765

>PF03092 BT1: BT1 family; InterPro: IPR004324 Members of this family are transmembrane proteins

Probab=94.54  E-value=1  Score=45.03  Aligned_cols=116  Identities=16%  Similarity=0.158  Sum_probs=69.9

Q ss_pred             HHHHHHHHHhhhhhhhhhhhhhhhhhccCchhHHHHHHHHHHHHHHHH---HHh--------hhhHHHHHHHHHHHHHHh
Q 017754          174 YVSMISIWNFLGRVGGGYFSEAIVRKFAYPRPVAMAVAQVVMAFALLY---YAI--------GWPGEIYVTTVLVGLSYG  242 (366)
Q Consensus       174 ~vsl~~i~~~~g~~~~G~lsD~~grr~~~~R~~~~~~~~~~~~~~~~l---~~~--------~~~~~l~~~~~l~G~~~g  242 (366)
                      +.+...+.+.++.+++-.+-.++.+++.+ |..+..... +.++..+.   +..        .+....+.-.++..+..+
T Consensus       256 f~~~~~~vg~~~~l~g~~~y~~~~~~~~~-R~~~~~t~~-~~~~~~l~~~~lv~~~n~~~Gi~d~~f~lgd~~l~~~~~~  333 (433)
T PF03092_consen  256 FYGTLSIVGSIASLLGILLYRKYFSNWSW-RRIFVVTTL-VSVLASLFDLLLVTRWNLDLGIPDQWFALGDTILEEVIGM  333 (433)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhCCCH-HHHHHHHHH-HHHHHhcccEEEEEEEeeeeCcCCeEEEEEhHHHHHHHHH
Confidence            44444455566666666666666666655 444333332 22222221   110        111111223445555555


Q ss_pred             hhhhhHHHHHHHhhCCCchhhHHHHHHhhhhhhHHhhhhHHHHHHHhhhh
Q 017754          243 AHWAIVPAAASELFGLKSFGALYNFLTLASPAGSLIFSGVIASGIYDYYA  292 (366)
Q Consensus       243 ~~~~~~~~~~se~f~~~~~g~~~g~~~~~~~~G~~i~gp~l~G~l~d~~~  292 (366)
                      ..+-.....++++-|+..-|+.|+++....++|..+ +..++..+.+..+
T Consensus       334 i~~mP~lvl~a~lcP~G~Egt~yall~s~~Nlg~~~-s~~lg~~l~~~~~  382 (433)
T PF03092_consen  334 IAFMPSLVLAARLCPKGSEGTVYALLASFSNLGSSV-SSTLGAFLMELFG  382 (433)
T ss_pred             HHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHHHH-HHHHHHHHHHHcC
Confidence            555555568899999999999999999999999995 8888888777665

Several are Leishmania putative proteins that are thought to be pteridine transporters [, ]. This family also contains five putative Arabidopsis thaliana proteins of unknown function as well as two predicted prokaryotic proteins (from the cyanobacteria Synechocystis and Synechococcus).

>KOG2325 consensus Predicted transporter/transmembrane protein [General function prediction only]

Probab=94.18  E-value=0.52  Score=47.56  Aligned_cols=73  Identities=10%  Similarity=0.257  Sum_probs=56.6

Q ss_pred             hhHHHHHHHhhCCCchhhHHHHHHhhhhhhHHhhhhHHHHHHHhhhhhhhhhhhhhccCCCCCcccCCCCCCcccCCcch
Q 017754          246 AIVPAAASELFGLKSFGALYNFLTLASPAGSLIFSGVIASGIYDYYAEKQAGLLWKYNGNMLPVSFRDQETPTCLGSICY  325 (366)
Q Consensus       246 ~~~~~~~se~f~~~~~g~~~g~~~~~~~~G~~i~gp~l~G~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~g~~~~  325 (366)
                      ....+.-+++.++++.++..+++.....++..+ +|++...++...+                                +
T Consensus       407 ~~~~tlySkiLgp~~q~~~qg~~~~~~s~~~~~-~~~~~t~~~~~~g--------------------------------~  453 (488)
T KOG2325|consen  407 TALDTLYSKILGPRDQGTMQGVFSISGSIARVV-GPIFSTAIFTLSG--------------------------------P  453 (488)
T ss_pred             chHHHHHHHHhCCccccceeEEEEeccchhhhh-hHHHHhhhHHhcC--------------------------------c
Confidence            345567799999999999999999999999996 9999999988887                                7


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHhhhch
Q 017754          326 SITCGIMAGLCIIAMVMSLIVVHRTK  351 (366)
Q Consensus       326 ~~~f~i~~~~~~~~~~~~~~~~~~~r  351 (366)
                      ++.+.+.++..++...+..++.+|.+
T Consensus       454 ~~v~~~~~~~~l~~~~l~~~~~~r~~  479 (488)
T KOG2325|consen  454 RPVWIILLCLLLVVAALWIVFLKRLV  479 (488)
T ss_pred             cHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence            77776666655555555555554433

>KOG0637 consensus Sucrose transporter and related proteins [Carbohydrate transport and metabolism]

Probab=93.44  E-value=0.3  Score=48.60  Aligned_cols=125  Identities=14%  Similarity=0.095  Sum_probs=75.5

Q ss_pred             HHhcHHHHHHHhCCChhHH--HHHHHHHHHhhhhhhhhhhhhhhhhhccCchhHHHHHHHHHHHHHHHHHHh-hh-----
Q 017754          155 VIDNLGQICQSLGYADTSI--YVSMISIWNFLGRVGGGYFSEAIVRKFAYPRPVAMAVAQVVMAFALLYYAI-GW-----  226 (366)
Q Consensus       155 ~~~~l~~i~~~~g~s~~~~--~vsl~~i~~~~g~~~~G~lsD~~grr~~~~R~~~~~~~~~~~~~~~~l~~~-~~-----  226 (366)
                      =...++++.+++|.+..-.  ..-.--+.+.+-+|+.|..|||..-|+.-+||.+.+.+ ....++++++.. ++     
T Consensus        51 elsy~tPyl~~lGvphk~~S~iw~~gPi~G~~vQP~vG~~SDrc~sr~GRRRPfI~~~s-~~i~~~l~Lig~aaDig~~l  129 (498)
T KOG0637|consen   51 ELSYLTPYLQSLGVPHKWSSIIWLCGPLSGLLVQPLVGSASDRCTSRYGRRRPFILAGS-LLIAVSLFLIGYAADIGLLL  129 (498)
T ss_pred             HhccccHHHHHcCCCcccccccccccccccceecccccccccccccccccccchHHHhh-HHHHHHHhhhhhHhhhhHHh
Confidence            3456778999999876533  23333455677788999999997666665555544433 333444444321 11     


Q ss_pred             ---hH----HHHHHHHHHHHH-----HhhhhhhHHHHHHHhhCCCchhh-HHHHHHhhhhhhHHhhhh
Q 017754          227 ---PG----EIYVTTVLVGLS-----YGAHWAIVPAAASELFGLKSFGA-LYNFLTLASPAGSLIFSG  281 (366)
Q Consensus       227 ---~~----~l~~~~~l~G~~-----~g~~~~~~~~~~se~f~~~~~g~-~~g~~~~~~~~G~~i~gp  281 (366)
                         +.    ..-+..++.|+.     .-......=+..+|+...++..+ +++.......+|+.+ |-
T Consensus       130 gd~~~~~~~~rai~~~~lg~~LLD~A~n~~qgp~ra~L~Dl~~~d~~~~~Ans~f~~f~avGnvL-GY  196 (498)
T KOG0637|consen  130 GDNERKPVKPRAIVLFILGFWLLDVANNTLQGPCRALLADLARGDAKKTRANSVFSFFMAVGNVL-GY  196 (498)
T ss_pred             cCCcccccchHHHHHHHHHhHHHHhhhhhhhhhHHHHHHHhccChhhhhccchhHHHHHHhccee-ee
Confidence               10    122333334432     22333444568899998887777 888888888888885 53

>KOG3098 consensus Uncharacterized conserved protein [Function unknown]

Probab=92.73  E-value=0.35  Score=48.52  Aligned_cols=101  Identities=11%  Similarity=0.072  Sum_probs=78.3

Q ss_pred             HHHHHHHHHhhhhhhhhhhhhhhhhhccCchhHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHhhhhhhHHHHHH
Q 017754          174 YVSMISIWNFLGRVGGGYFSEAIVRKFAYPRPVAMAVAQVVMAFALLYYAIGWPGEIYVTTVLVGLSYGAHWAIVPAAAS  253 (366)
Q Consensus       174 ~vsl~~i~~~~g~~~~G~lsD~~grr~~~~R~~~~~~~~~~~~~~~~l~~~~~~~~l~~~~~l~G~~~g~~~~~~~~~~s  253 (366)
                      ..++......+..++++.+.|+++.|+.+      .++......-.+.+...+.+.+|+...+.|+|.+..|.-...+.+
T Consensus        55 ~~aiiY~~ftv~~l~~psiv~~i~~K~~l------v~ga~~y~~f~~gfl~~N~y~~yfssallG~Gaallw~GqG~ylt  128 (461)
T KOG3098|consen   55 GQAIIYAFFTVSCLFAPSIVNFLGPKWAL------VIGATCYAAFPLGFLFPNSYYLYFSSALLGFGAALLWTGQGGYLT  128 (461)
T ss_pred             HHHHHHHHHHHHHHhhHHHHHHhhHHHHH------HHHhHHHHHHHHHHHhcchHHHHHHHHHhhhhHHheecccceehh
Confidence            46777778888899999999999988665      555555554444445667888999999999999988988888999


Q ss_pred             HhhCCCchhhHHHHHHhhhhhhHHhhhh
Q 017754          254 ELFGLKSFGALYNFLTLASPAGSLIFSG  281 (366)
Q Consensus       254 e~f~~~~~g~~~g~~~~~~~~G~~i~gp  281 (366)
                      +....+...+..++.......+.++ |+
T Consensus       129 ~~st~~tie~Nisi~Wai~~~~li~-Gg  155 (461)
T KOG3098|consen  129 SNSTRETIERNISIFWAIGQSSLII-GG  155 (461)
T ss_pred             hcCChhhHHHHHHHHHHHHHHHHHh-hh
Confidence            9998888888877766666665553 53

>KOG3574 consensus Acetyl-CoA transporter [Inorganic ion transport and metabolism]

Probab=92.54  E-value=1  Score=44.03  Aligned_cols=126  Identities=16%  Similarity=0.217  Sum_probs=72.2

Q ss_pred             hhHHHHHhcHHHHHHHhCCChhHHHHHHHHHHHhhhhhhhhhhhh-----hhhhhccCchhHHHHHHHHHHHHHHHHHHh
Q 017754          150 GSGLTVIDNLGQICQSLGYADTSIYVSMISIWNFLGRVGGGYFSE-----AIVRKFAYPRPVAMAVAQVVMAFALLYYAI  224 (366)
Q Consensus       150 ~~~~~~~~~l~~i~~~~g~s~~~~~vsl~~i~~~~g~~~~G~lsD-----~~grr~~~~R~~~~~~~~~~~~~~~~l~~~  224 (366)
                      +.-++....+|.+++.-|.|-+.....-+.-+.+.-.++|.++.|     |+|||+.+-     .-++.+.+..++++..
T Consensus        44 GiP~GL~~~iP~lL~ak~vSyt~~a~fS~ay~P~sLKllWaPiVDs~y~k~~GrrksWv-----vp~q~llG~~mllLs~  118 (510)
T KOG3574|consen   44 GIPLGLIGAIPLLLQAKGVSYTSQAIFSFAYWPFSLKLLWAPIVDSVYSKRFGRRKSWV-----VPCQYLLGLFMLLLSY  118 (510)
T ss_pred             CCchhHhhhhHHHhcCCCcchhhhhhhhhhhhHHHHHHHHHhhhHHHHHHhhcccccee-----eehHHHHHHHHHHHhh
Confidence            333445558999998777664443333334467778899999999     888876652     3344444443334331


Q ss_pred             ------h----hhHH--HHHHHHHHHHHHhhhhhhHHHHHHHhhCCCchhhHHHHHHhhhhhhHHhhhh
Q 017754          225 ------G----WPGE--IYVTTVLVGLSYGAHWAIVPAAASELFGLKSFGALYNFLTLASPAGSLIFSG  281 (366)
Q Consensus       225 ------~----~~~~--l~~~~~l~G~~~g~~~~~~~~~~se~f~~~~~g~~~g~~~~~~~~G~~i~gp  281 (366)
                            .    .+..  +.+..++.-|..+.+-..+-++.-.+..+++.|-+......+..+|.++ |.
T Consensus       119 ~v~~~~g~ng~~p~v~~lt~~f~LLnflaAtQDIAVDgwALtmLs~e~lgyaST~q~Vg~~~GyfL-~~  186 (510)
T KOG3574|consen  119 LVDRGLGGNGGLPNVVALTLLFLLLNFLAATQDIAVDGWALTMLSRENLGYASTCQSVGQTAGYFL-GN  186 (510)
T ss_pred             CCCcccccCCCCcchHHHHHHHHHHHHHHhhhhhhhhHHHHHhcCHhhcCchhHHHHHHHhhhHHh-hc
Confidence                  1    1111  2223334444444544455556666777777776666666666777764 53

>PF06963 FPN1: Ferroportin1 (FPN1); InterPro: IPR009716 This entry represents the solute carrier family 40 member 1 family of proteins, also known as Ferroportin 1

Probab=91.61  E-value=3.2  Score=41.48  Aligned_cols=155  Identities=19%  Similarity=0.166  Sum_probs=86.6

Q ss_pred             CHHHHhhhhhHHHHHHHHHHhhhhHHHHHhcHHHHHHHhCCChhHH--HHHHHHHHHhhhhhhhhhhhhhhhhhccCchh
Q 017754          128 TLPQALMKADFLLLFFSLVLASGSGLTVIDNLGQICQSLGYADTSI--YVSMISIWNFLGRVGGGYFSEAIVRKFAYPRP  205 (366)
Q Consensus       128 ~~~~~l~~~~~~ll~~~~~~~~~~~~~~~~~l~~i~~~~g~s~~~~--~vsl~~i~~~~g~~~~G~lsD~~grr~~~~R~  205 (366)
                      .|+..++.+.|. -.+++.+.+...+.+...+-.++++.|++...+  +=++-.+.+..|.+...++-+|+|-.+.-   
T Consensus       251 ~w~~Y~~q~vfl-as~alalLY~TVLsf~~lmt~yl~~~G~s~~~igi~R~~gav~Gl~gT~~~p~l~~riGlvr~G---  326 (432)
T PF06963_consen  251 GWRTYFRQPVFL-ASFALALLYFTVLSFGGLMTAYLKSQGYSPSVIGIFRGLGAVFGLLGTWVYPWLMKRIGLVRAG---  326 (432)
T ss_pred             cHHHHHhCHHHH-HHHHHHHHHHHHhcCcHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchhhH---
Confidence            466666666444 334444444444555566667888889998765  66666777888888888888888764332   


Q ss_pred             HHHHHHHH-HHHHHHHHHH-hhhh-HHHHHHHHHHHHH--Hhhhhhh---HHHHHHHhhCCCchhhHHHHHHhhhhhhHH
Q 017754          206 VAMAVAQV-VMAFALLYYA-IGWP-GEIYVTTVLVGLS--YGAHWAI---VPAAASELFGLKSFGALYNFLTLASPAGSL  277 (366)
Q Consensus       206 ~~~~~~~~-~~~~~~~l~~-~~~~-~~l~~~~~l~G~~--~g~~~~~---~~~~~se~f~~~~~g~~~g~~~~~~~~G~~  277 (366)
                      .+....+. +..++...+. ..++ .......++.|+.  =-+.|..   ..-++-|..+.++||...|.-+...++-.+
T Consensus       327 ~~~l~~q~~~L~~~v~~~~~~~~~~~~~s~~~l~~gi~~SR~GLW~fDL~~~qi~Qe~V~~~~Rg~v~gvq~sl~~lf~l  406 (432)
T PF06963_consen  327 LWSLWWQWVCLALCVVSFWAPGSPFSSISAYLLLGGIALSRIGLWSFDLAVTQIMQENVPESERGAVSGVQNSLQSLFEL  406 (432)
T ss_pred             HHHHHHHHHHHHHHHHHHhcCCCCchhhHHHHHHHHHHHHHHHHHhhhHHHHHhhcccCCHHHhhHHHHHHHHHHHHHHH
Confidence            12222222 2222222222 2222 1222222222322  1122322   223566788888999999998888887777


Q ss_pred             hhhhHHHHHHH
Q 017754          278 IFSGVIASGIY  288 (366)
Q Consensus       278 i~gp~l~G~l~  288 (366)
                      + . .+.+.+.
T Consensus       407 l-~-~~~~ii~  415 (432)
T PF06963_consen  407 L-S-FVLTIIF  415 (432)
T ss_pred             H-H-HHHHhcc
Confidence            4 2 3444443

It is thought to be involved in iron export from duodenal epithelial cells and also in transfer of iron between maternal and fetal circulation. This family of proteins is known to be localised in the basolateral membrane of polarized epithelial cells [].; GO: 0005381 iron ion transmembrane transporter activity, 0034755 iron ion transmembrane transport, 0016021 integral to membrane

>PF06779 DUF1228: Protein of unknown function (DUF1228); InterPro: IPR010645 This entry represents the N terminus of several putative bacterial membrane proteins, which may be sugar transporters

Probab=91.35  E-value=1.5  Score=33.38  Aligned_cols=66  Identities=8%  Similarity=-0.004  Sum_probs=43.7

Q ss_pred             HHHHHhcHHHHHHHhCCChhHH--HHHHHHHHHhhhhhhhhhhhhhhhhhccCchhHHHHHHHHHHHHHHHHHH
Q 017754          152 GLTVIDNLGQICQSLGYADTSI--YVSMISIWNFLGRVGGGYFSEAIVRKFAYPRPVAMAVAQVVMAFALLYYA  223 (366)
Q Consensus       152 ~~~~~~~l~~i~~~~g~s~~~~--~vsl~~i~~~~g~~~~G~lsD~~grr~~~~R~~~~~~~~~~~~~~~~l~~  223 (366)
                      -+.+...+|.+.++.+++.++.  +-+.-.++..+|.+...++.++..+++.      +..+.++..+..+..+
T Consensus         8 RFayTplLP~M~~~~~ls~~~ag~lasaNy~GYL~GAl~~~~~~~~~~~~~~------~~~~l~~~~~~~~~ma   75 (85)
T PF06779_consen    8 RFAYTPLLPLMQADGGLSLSQAGWLASANYLGYLVGALLASRLPRHSRPRRL------LRAGLLLTVLSTAAMA   75 (85)
T ss_pred             HHHHHhHhHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhcccHHHH------HHHHHHHHHHHHHHHH
Confidence            3567778999999999988765  6667777777788887777766433222      2455555555444444

Note that many members are hypothetical proteins.

>KOG4332 consensus Predicted sugar transporter [Carbohydrate transport and metabolism]

Probab=90.30  E-value=0.53  Score=43.89  Aligned_cols=90  Identities=14%  Similarity=0.151  Sum_probs=50.4

Q ss_pred             HHHhCCChhHH---HHHHHHHHHhhhhhhhhhhhhhhhhhccCchhHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHH
Q 017754          163 CQSLGYADTSI---YVSMISIWNFLGRVGGGYFSEAIVRKFAYPRPVAMAVAQVVMAFALLYYAIGWPGEIYVTTVLVGL  239 (366)
Q Consensus       163 ~~~~g~s~~~~---~vsl~~i~~~~g~~~~G~lsD~~grr~~~~R~~~~~~~~~~~~~~~~l~~~~~~~~l~~~~~l~G~  239 (366)
                      .+.+|+...++   ++.-++- ..+...+.|-+.|+.|||+.-   +...+..++.++.   =-.+....+++++++-|+
T Consensus        64 YstYgFgkG~IgqLfiaGfgS-smLFGtivgSLaDkqGRKrac---vtycitYiLsCiT---KhSpqYkVLmVGR~LGGi  136 (454)
T KOG4332|consen   64 YSTYGFGKGDIGQLFIAGFGS-SMLFGTIVGSLADKQGRKRAC---VTYCITYILSCIT---KHSPQYKVLMVGRVLGGI  136 (454)
T ss_pred             ehhcCccCCccceeeecccch-HHHHHHHHHHHHhhhccccce---eeehHHHHHHHHh---hcCCceEEEeehhhhhhH
Confidence            35567765554   2222221 234455668899999999764   1112333332221   112233467889999998


Q ss_pred             HHhhhhhhHHH-HHHHhhCCC
Q 017754          240 SYGAHWAIVPA-AASELFGLK  259 (366)
Q Consensus       240 ~~g~~~~~~~~-~~se~f~~~  259 (366)
                      ...-.++..-+ +++|.-..+
T Consensus       137 aTsLLFSaFEsWliaEHnekr  157 (454)
T KOG4332|consen  137 ATSLLFSAFESWLIAEHNEKR  157 (454)
T ss_pred             HHHHHHHHHHHHHHHHhhhcc
Confidence            87777766655 556655333

>PF01733 Nucleoside_tran: Nucleoside transporter; InterPro: IPR002259 Delayed-early response (DER) gene products include growth progression factors and several unknown products of novel cDNAs

Probab=89.95  E-value=0.11  Score=49.38  Aligned_cols=100  Identities=11%  Similarity=0.098  Sum_probs=3.0

Q ss_pred             HHHHHHHHHhhhhhhhhhhhhhhhhhccCchhHHHH-HHHHHHHHHHHHHH-----------hhhhHHHHHHHHHHHHHH
Q 017754          174 YVSMISIWNFLGRVGGGYFSEAIVRKFAYPRPVAMA-VAQVVMAFALLYYA-----------IGWPGEIYVTTVLVGLSY  241 (366)
Q Consensus       174 ~vsl~~i~~~~g~~~~G~lsD~~grr~~~~R~~~~~-~~~~~~~~~~~l~~-----------~~~~~~l~~~~~l~G~~~  241 (366)
                      ...+++++.++||.+.++.- +-+++   +|..+.. +.=+++...+++..           ..+....++..+++|+..
T Consensus       187 ~fl~Fn~gD~iGR~l~~~~~-~~~~~---~~~l~~~s~~R~~fiPlf~~cn~~p~~~~~~~~~~~d~~~~i~~~l~g~TN  262 (309)
T PF01733_consen  187 LFLLFNLGDFIGRFLASWPR-WPGPS---PRWLWILSLLRFLFIPLFLLCNVQPRPRYLPVLFNSDAWFIILMLLFGFTN  262 (309)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             HHHHHHHHHHhcchhcceeE-ecccc---cccHHHHHHHHHHHHHHHHHHHhhcccccCCCcccchHHHHHHHHHHHHcc
Confidence            56678999999999888752 11111   1111111 11112211111111           122234455677888888


Q ss_pred             hhhhhhHHHHHHHhhCCCchhhHHHHHHhhhhhhHH
Q 017754          242 GAHWAIVPAAASELFGLKSFGALYNFLTLASPAGSL  277 (366)
Q Consensus       242 g~~~~~~~~~~se~f~~~~~g~~~g~~~~~~~~G~~  277 (366)
                      |-..++.....++..+++++..+-.++.....+|-.
T Consensus       263 Gyl~tl~m~~~p~~v~~~e~e~aG~~~~~~L~~Gl~  298 (309)
T PF01733_consen  263 GYLSTLAMMYAPKSVSPEERELAGSVMSFFLSFGLF  298 (309)
T ss_dssp             ----HHHH----------------------------
T ss_pred             chhhhceeeeCCCcCCHHHHHHHHHHHHHHHHHHHH
Confidence            877777777778888877777776666666666655

Murine and human cDNAs from one novel DER gene (DER12) have been characterised to identify its product and to examine its role in the growth response []. Both sequences encode a hydrophobic 36kDa protein that is predicted to contain 8 transmembrane (TM) domains. The protein has been localised to the nucleolus, where its concentration increases following mitogen stimulation []. Although the function of the protein is unknown, its identification as a nucleolar gene transcriptionally activated by growth factors implicates it as participating in the proliferative response []. Sequence analysis reveals the protein to share a high degree of similarity with the C-terminal portion of equilibrative nucleoside transporters. These proteins are integral membrane proteins which enable the movement of hydrophilic nucleosides and nucleoside analogs down their concentration gradients across cell membranes. ENT family members have been identified in humans, mice, fish, tunicates, slime molds, and bacteria []. ; GO: 0005337 nucleoside transmembrane transporter activity, 0006810 transport, 0016020 membrane; PDB: 1HXI_A.

>PF13000 Acatn: Acetyl-coenzyme A transporter 1; InterPro: IPR024371 Acetyl-coenzyme A transporter 1 (also known as acatn) is a multipass transmembrane protein that appears to promote 9-O-acetylation in gangliosides [, ]

Probab=89.74  E-value=25  Score=35.78  Aligned_cols=99  Identities=16%  Similarity=0.192  Sum_probs=59.4

Q ss_pred             HHHhhhhhhHHHHHHHhhCCCchhhHHHHHHhhhhhhHHhhhhHHHHHHHhhhhhhhhhhhhhccCC-CCCcc-cCCCCC
Q 017754          239 LSYGAHWAIVPAAASELFGLKSFGALYNFLTLASPAGSLIFSGVIASGIYDYYAEKQAGLLWKYNGN-MLPVS-FRDQET  316 (366)
Q Consensus       239 ~~~g~~~~~~~~~~se~f~~~~~g~~~g~~~~~~~~G~~i~gp~l~G~l~d~~~~~~~~~~~~~~~~-~~~~~-~~~~~~  316 (366)
                      +....++....+.-+.+..+..=|+.+-++|..+++|+- .-..+.=++.|....+.=.      .+ ....+ ....+.
T Consensus       417 f~stvmFVai~AFharISDP~IGGTYMTLLNTvSNLGGt-WP~~~vL~lVD~fT~~~C~------~~~t~~~~c~~~~~k  489 (544)
T PF13000_consen  417 FMSTVMFVAIMAFHARISDPAIGGTYMTLLNTVSNLGGT-WPRTFVLWLVDYFTVATCT------VPGTNSFSCSSDAEK  489 (544)
T ss_pred             HHHHHHHHHHHHHHhhccCcccchHHHHHHHHHHhcCCC-chHHHHHHHhhhccccccC------CCCCCCceeccHHHH
Confidence            334455555566667777888899999999999999998 4445666778875422100      00 00000 011123


Q ss_pred             Ccc---cCCcch--HHHHHHHHHHHHHHHHHHH
Q 017754          317 PTC---LGSICY--SITCGIMAGLCIIAMVMSL  344 (366)
Q Consensus       317 ~~c---~g~~~~--~~~f~i~~~~~~~~~~~~~  344 (366)
                      ..|   .|..|-  +=.+++..++|++..++.+
T Consensus       490 ~~Ct~~~GG~C~i~rDGYYi~~~lCvviGi~~~  522 (544)
T PF13000_consen  490 EQCTKAGGGTCVIIRDGYYITNILCVVIGIVLW  522 (544)
T ss_pred             HHHhhCCCCeEEEEeccchhhhHHHHHHHHHHH
Confidence            346   366674  6677887777777555443

This entry represents acatn and its homologues.; GO: 0008521 acetyl-CoA transporter activity, 0016021 integral to membrane

>PF03219 TLC: TLC ATP/ADP transporter; InterPro: IPR004667 These proteins are members of the ATP:ADP Antiporter (AAA) family, which consists of nucleotide transporters that have 12 GES predicted transmembrane regions

Probab=89.37  E-value=27  Score=35.57  Aligned_cols=42  Identities=19%  Similarity=0.273  Sum_probs=36.0

Q ss_pred             hHHHHHHHhhCCCchhhHHHHHHhhhhhhHHhhhhHHHHHHHh
Q 017754          247 IVPAAASELFGLKSFGALYNFLTLASPAGSLIFSGVIASGIYD  289 (366)
Q Consensus       247 ~~~~~~se~f~~~~~g~~~g~~~~~~~~G~~i~gp~l~G~l~d  289 (366)
                      +.|..+.|++..++..+.|+++.++.++|..+ |+.+..++.+
T Consensus       164 LFW~fAN~itt~~eAKRfYpl~g~ganigli~-sG~~~~~~~~  205 (491)
T PF03219_consen  164 LFWGFANEITTVEEAKRFYPLFGLGANIGLIF-SGQLTSYFSS  205 (491)
T ss_pred             HHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHH
Confidence            46888899999999999999999999999996 7777776665

One protein from Rickettsia prowazekii functions to take up ATP from the eukaryotic cell cytoplasm into the bacterium in exchange for ADP. Five AAA family paralogues are encoded within the genome of R. prowazekii. This organism transports UMP and GMP but not CMP, and it seems likely that one or more of the AAA family paralogues are responsible. The genome of Chlamydia trachomatis encodes two AAA family members, Npt1 and Npt2, which catalyse ATP/ADP exchange and GTP, CTP, ATP and UTP uptake probably employing a proton symport mechanism. Two homologous adenylate translocators of Arabidopsis thaliana are postulated to be localized to the intracellular plastid membrane where they function as ATP importers.; GO: 0005471 ATP:ADP antiporter activity, 0005524 ATP binding, 0006810 transport, 0016021 integral to membrane

>KOG3762 consensus Predicted transporter [General function prediction only]

Probab=88.14  E-value=0.53  Score=47.87  Aligned_cols=48  Identities=13%  Similarity=0.252  Sum_probs=40.1

Q ss_pred             HHhcHHHHHHHhCCChhHH--HHHHHHHHHhhhhhhhhhhhhhhhhhccC
Q 017754          155 VIDNLGQICQSLGYADTSI--YVSMISIWNFLGRVGGGYFSEAIVRKFAY  202 (366)
Q Consensus       155 ~~~~l~~i~~~~g~s~~~~--~vsl~~i~~~~g~~~~G~lsD~~grr~~~  202 (366)
                      ....++.+.+.+|++....  ++..--+..+++.|++|+++||+.+|+..
T Consensus        30 l~pll~vy~kQLGl~p~~~Gtl~g~~P~v~~L~~P~~g~~Adr~r~~r~l   79 (618)
T KOG3762|consen   30 LFPLLAVYFKQLGLNPAVVGTLTGTLPLVEFLAAPLWGFLADRYRKRRPL   79 (618)
T ss_pred             cchHHHHHHHHcCCCHHHhhhhhhHHHHHHHHhHHHHHHHHHHHHhcCch
Confidence            4456778889999998876  77777888999999999999999776554

>KOG3810 consensus Micronutrient transporters (folate transporter family) [Coenzyme transport and metabolism]

Probab=88.10  E-value=5.6  Score=38.58  Aligned_cols=88  Identities=19%  Similarity=0.213  Sum_probs=57.8

Q ss_pred             HHHHhhhhhhhhhhhhhhhhhccCchhHHHHHHHHHHHHHHHHHH-hhhhHHHHHHHHHHHHHHhhhhhhHHHHHHHhhC
Q 017754          179 SIWNFLGRVGGGYFSEAIVRKFAYPRPVAMAVAQVVMAFALLYYA-IGWPGEIYVTTVLVGLSYGAHWAIVPAAASELFG  257 (366)
Q Consensus       179 ~i~~~~g~~~~G~lsD~~grr~~~~R~~~~~~~~~~~~~~~~l~~-~~~~~~l~~~~~l~G~~~g~~~~~~~~~~se~f~  257 (366)
                      .+.++++.+..|++.-.+.|    .+...+.++.++.+...+++. ..+.+..|++.+++...+....++....++....
T Consensus       281 tlLGa~~~~~~g~l~i~w~r----~g~~ll~~~s~~~agllf~m~~t~~Iw~~Ya~yvlfr~~y~l~itiA~~~iA~nL~  356 (433)
T KOG3810|consen  281 TLLGAIAALAAGYLNINWNR----WGDLLLAVGSAVQAGLLFIMAQTQHIWVCYAGYVLFRVIYQLTITIATFQIARNLS  356 (433)
T ss_pred             HHHHHHHHHHHHheeeccch----hhHHHHHHHHHHhhhhhhhhhcccceehhhhhHHHHHhhHhhhhhHHHHHHHHhhh
Confidence            34456666777777655544    233455555555554444444 3455677888888888887777777777888888


Q ss_pred             CCchhhHHHHHHh
Q 017754          258 LKSFGALYNFLTL  270 (366)
Q Consensus       258 ~~~~g~~~g~~~~  270 (366)
                      .+.+|..+|+-..
T Consensus       357 ~e~~gLvFGiNTF  369 (433)
T KOG3810|consen  357 SELFGLVFGINTF  369 (433)
T ss_pred             hhhheeeeehHHH
Confidence            8888888887444

>TIGR00806 rfc RFC reduced folate carrier

Probab=85.14  E-value=12  Score=37.98  Aligned_cols=93  Identities=14%  Similarity=0.118  Sum_probs=59.1

Q ss_pred             HHHHHHHHhhhhhhhhhhhhhhhhhccCchhHHHHHHHHHHHHHHHHHH-hhhhHHHHHHHHHHHHHHhhhhhhHHHHHH
Q 017754          175 VSMISIWNFLGRVGGGYFSEAIVRKFAYPRPVAMAVAQVVMAFALLYYA-IGWPGEIYVTTVLVGLSYGAHWAIVPAAAS  253 (366)
Q Consensus       175 vsl~~i~~~~g~~~~G~lsD~~grr~~~~R~~~~~~~~~~~~~~~~l~~-~~~~~~l~~~~~l~G~~~g~~~~~~~~~~s  253 (366)
                      -++..+.+++..+..|++-.++.+ ...   +.+.+..++.+..+++.. ..+.+..|++.++++..+....++...-++
T Consensus       304 eA~~tllga~~a~~ag~~~~~w~~-~~~---l~l~v~s~~~~gll~~m~~t~~Iw~~Y~~yvlf~~~y~flitia~~~iA  379 (511)
T TIGR00806       304 DAASTLLGAITSFIAGFVNIRWAR-WSK---LLIAVVSAIQAGLVFWMSQSHDIWVLYVTYVLFRGIYQFLVPIATFQIA  379 (511)
T ss_pred             HHHHHHHHHHHHHHHHhhcCCchh-hHH---HHHHHHHHHHHHHhhhhhcccchHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            334445556677788887444421 111   233333333333333333 346677889999999998888888888888


Q ss_pred             HhhCCCchhhHHHHHHhh
Q 017754          254 ELFGLKSFGALYNFLTLA  271 (366)
Q Consensus       254 e~f~~~~~g~~~g~~~~~  271 (366)
                      .....+.+|..+|+-++.
T Consensus       380 ~~L~~~~~aLvFGiNtfv  397 (511)
T TIGR00806       380 SSLSKELCALVFGINTFV  397 (511)
T ss_pred             HHhcccceEEEEecHHHH
Confidence            888888889888875543

Proteins of the RFC family are so-far restricted to animals. RFC proteins possess 12 putative transmembrane a-helical spanners (TMSs) and evidence for a 12 TMS topology has been published for the human RFC. The RFC transporters appear to transport reduced folate by an energy-dependent, pH-dependent, Na+-independent mechanism. Folate:H+ symport, folate:OH- antiport and folate:anion antiport mechanisms have been proposed, but the energetic mechanism is not well defined.

>KOG1479 consensus Nucleoside transporter [Nucleotide transport and metabolism]

Probab=84.83  E-value=43  Score=33.14  Aligned_cols=49  Identities=8%  Similarity=0.034  Sum_probs=26.3

Q ss_pred             hHHHHHhcHHHHHHHh-CCChhHHHHHHHHHHHhhhhhhhhhhhhhhhhh
Q 017754          151 SGLTVIDNLGQICQSL-GYADTSIYVSMISIWNFLGRVGGGYFSEAIVRK  199 (366)
Q Consensus       151 ~~~~~~~~l~~i~~~~-g~s~~~~~vsl~~i~~~~g~~~~G~lsD~~grr  199 (366)
                      ..-.+++.-+++.+.+ +.+.+..+.+.+.+.+.+..++.-.+--+...|
T Consensus        33 pWN~fiTa~~y~~~~~~~~~~~~~F~~~~~~~a~i~~ll~~~~n~~~~~~   82 (406)
T KOG1479|consen   33 PWNMFITASDYYYYRFPGYHNSKNFTSSYTLAAQIPLLLFNLLNAFLNTR   82 (406)
T ss_pred             chHhhhccHHHHHhhcCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3445666666666665 444433355555555555555555554444433

>PF11947 DUF3464: Protein of unknown function (DUF3464); InterPro: IPR021855 This family of proteins are functionally uncharacterised

Probab=81.36  E-value=4.1  Score=34.50  Aligned_cols=34  Identities=15%  Similarity=0.137  Sum_probs=26.7

Q ss_pred             hhhhHHHHHHHhhCCCchhhHHHHHHhhhhhhHH
Q 017754          244 HWAIVPAAASELFGLKSFGALYNFLTLASPAGSL  277 (366)
Q Consensus       244 ~~~~~~~~~se~f~~~~~g~~~g~~~~~~~~G~~  277 (366)
                      ...+.|.+.|.-+.++.-|..+|+-.+-.+++-+
T Consensus       111 llGisYGilSaSWD~~r~GSllG~~e~~~N~~r~  144 (153)
T PF11947_consen  111 LLGISYGILSASWDPEREGSLLGWEEFKRNWGRM  144 (153)
T ss_pred             HHhhhhhhcccccCCCCCCCcccHHHHHHhHHHH
Confidence            3567788888889888899999988777766655

This protein is found in bacteria and eukaryotes. Proteins in this family are typically between 137 to 196 amino acids in length.

>PF05631 DUF791: Protein of unknown function (DUF791); InterPro: IPR008509 This family consists of several eukaryotic proteins of unknown function

Probab=80.70  E-value=58  Score=31.65  Aligned_cols=64  Identities=13%  Similarity=0.209  Sum_probs=34.2

Q ss_pred             hhhHHHHHHHHHHhhhhHHHHH----hcHHHHHHHhCCChhHH--HHHHHH-HHHhhhhhhhhhhhhhhhh
Q 017754          135 KADFLLLFFSLVLASGSGLTVI----DNLGQICQSLGYADTSI--YVSMIS-IWNFLGRVGGGYFSEAIVR  198 (366)
Q Consensus       135 ~~~~~ll~~~~~~~~~~~~~~~----~~l~~i~~~~g~s~~~~--~vsl~~-i~~~~g~~~~G~lsD~~gr  198 (366)
                      .+++++++++-+++..+.....    .|+..=-...|++....  ..+... ++|.+-.++.|.+++...+
T Consensus       118 ~~~~~~L~~GRvlgGiaTSLLfS~FEsW~V~Eh~~~g~~~~~L~~tF~~~tf~~n~~vAI~aGv~a~~l~~  188 (354)
T PF05631_consen  118 SSNYPVLLLGRVLGGIATSLLFSAFESWMVHEHNKRGFPQEWLSDTFSLATFFGNGVVAIGAGVVANVLAD  188 (354)
T ss_pred             ccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHhHHHHHHHhHHHHHHHH
Confidence            4668888888776655544332    24432223457765432  233333 4555556666666665543

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

No hit with e-value below 0.005

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	366
1pw4_A	451	Glycerol-3-phosphate transporter; transmembrane, i	99.67
4aps_A	491	DI-OR tripeptide H+ symporter; transport protein,	99.61
1pw4_A	451	Glycerol-3-phosphate transporter; transmembrane, i	99.57
3o7q_A	438	L-fucose-proton symporter; transporter, multi-PASS	99.57
2gfp_A	375	EMRD, multidrug resistance protein D; membrane pro	99.57
3o7q_A	438	L-fucose-proton symporter; transporter, multi-PASS	99.55
2xut_A	524	Proton/peptide symporter family protein; transport	99.49
2cfq_A	417	Lactose permease; transport, transport mechanism,	99.46
4gc0_A	491	D-xylose-proton symporter; MFS, transport protein;	99.32
4gc0_A	491	D-xylose-proton symporter; MFS, transport protein;	99.27
4aps_A	491	DI-OR tripeptide H+ symporter; transport protein,	99.21
2gfp_A	375	EMRD, multidrug resistance protein D; membrane pro	99.17
2cfq_A	417	Lactose permease; transport, transport mechanism,	99.05
2xut_A	524	Proton/peptide symporter family protein; transport	98.58

>1pw4_A Glycerol-3-phosphate transporter; transmembrane, inner membrane, major facilitator superfamily, secondary active membrane transporter; 3.30A {Escherichia coli} SCOP: f.38.1.1

Probab=99.67  E-value=4.8e-15  Score=144.62  Aligned_cols=184  Identities=16%  Similarity=0.166  Sum_probs=146.2

Q ss_pred             HHHHhhhhhHHHHHHHHHHhhhhHHHHHhcHHHHHHH-hCCChhHH--HHHHHHHHHhhhhhhhhhhhhhh--hhhccCc
Q 017754          129 LPQALMKADFLLLFFSLVLASGSGLTVIDNLGQICQS-LGYADTSI--YVSMISIWNFLGRVGGGYFSEAI--VRKFAYP  203 (366)
Q Consensus       129 ~~~~l~~~~~~ll~~~~~~~~~~~~~~~~~l~~i~~~-~g~s~~~~--~vsl~~i~~~~g~~~~G~lsD~~--grr~~~~  203 (366)
                      .++.++++.+|.+.+..++.......+..++|.+.++ +|++....  ..++..++..+++++.|+++||+  +||+.. 
T Consensus       245 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~~~~~~~~~~~~-  323 (451)
T 1pw4_A          245 MQYVLPNKLLWYIAIANVFVYLLRYGILDWSPTYLKEVKHFALDKSSWAYFLYEYAGIPGTLLCGWMSDKVFRGNRGAT-  323 (451)
T ss_dssp             HHHTSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHBTTBSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSTTCHHHH-
T ss_pred             HHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchhH-
Confidence            4567788999998888888777777788899999887 79987655  78888899999999999999999  775433 


Q ss_pred             hhHHHHHHHHHHH-HHHHHHHhh---hhHHHHHHHHHHHHHHhhhhhhHHHHHHHhhCCCchhhHHHHHHhhhhh-hHHh
Q 017754          204 RPVAMAVAQVVMA-FALLYYAIG---WPGEIYVTTVLVGLSYGAHWAIVPAAASELFGLKSFGALYNFLTLASPA-GSLI  278 (366)
Q Consensus       204 R~~~~~~~~~~~~-~~~~l~~~~---~~~~l~~~~~l~G~~~g~~~~~~~~~~se~f~~~~~g~~~g~~~~~~~~-G~~i  278 (366)
                           ..+.++.. ++++++...   +...+.+..++.|++.+..++....++.|.+|++++|+++|+.+....+ |..+
T Consensus       324 -----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~g~~~  398 (451)
T 1pw4_A          324 -----GVFFMTLVTIATIVYWMNPAGNPTVDMICMIVIGFLIYGPVMLIGLHALELAPKKAAGTAAGFTGLFGYLGGSVA  398 (451)
T ss_dssp             -----HHHHHHHHHHHHHHTTSCCTTCHHHHHHHHHHHHHHHTHHHHHHHHHHHHTSCTTHHHHHHHHHHHHHHHHHHHH
T ss_pred             -----HHHHHHHHHHHHHHHHHhcccCHHHHHHHHHHHHHHHhchHHHHHHHHHHHhchhhhhhHHHHHHHHHHHHHHHH
Confidence                 33333333 555554432   3445666777888888888888889999999999999999999999999 9996


Q ss_pred             hhhHHHHHHHhhhhhhhhhhhhhccCCCCCcccCCCCCCcccCCcchHHHHHHHHHHHHHHHHHHHHHhhhch
Q 017754          279 FSGVIASGIYDYYAEKQAGLLWKYNGNMLPVSFRDQETPTCLGSICYSITCGIMAGLCIIAMVMSLIVVHRTK  351 (366)
Q Consensus       279 ~gp~l~G~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~g~~~~~~~f~i~~~~~~~~~~~~~~~~~~~r  351 (366)
                       +|.+.|+++|..+                                |+..|++.+++++++.++.+++.++.+
T Consensus       399 -~~~~~g~l~~~~g--------------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~  438 (451)
T 1pw4_A          399 -ASAIVGYTVDFFG--------------------------------WDGGFMVMIGGSILAVILLIVVMIGEK  438 (451)
T ss_dssp             -HHHHHHHHHHSSC--------------------------------SHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             -HHHHHHHHHHhcC--------------------------------cHHHHHHHHHHHHHHHHHHHHHHhhhh
Confidence             9999999999876                                999999999888888777666544433

>4aps_A DI-OR tripeptide H+ symporter; transport protein, peptide transport, major facilitator SUPE transporter, MFS; 3.30A {Streptococcus thermophilus}

Probab=99.61  E-value=2.6e-14  Score=141.48  Aligned_cols=171  Identities=13%  Similarity=0.141  Sum_probs=140.6

Q ss_pred             hHHHHHHHHHHhhhhHHHHHhcHHHHHHH------hCCChhHH--HHHHHHHHHhhhhhhhhhhhhh-hhhhccCchhHH
Q 017754          137 DFLLLFFSLVLASGSGLTVIDNLGQICQS------LGYADTSI--YVSMISIWNFLGRVGGGYFSEA-IVRKFAYPRPVA  207 (366)
Q Consensus       137 ~~~ll~~~~~~~~~~~~~~~~~l~~i~~~------~g~s~~~~--~vsl~~i~~~~g~~~~G~lsD~-~grr~~~~R~~~  207 (366)
                      .+|.+++..++.....+.+..+++.+.++      +|++..+.  ..+...++..++.+++|+++|| +|||+.+     
T Consensus        14 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~~g~r~~~-----   88 (491)
T 4aps_A           14 GLSTLFMTEMWERFSYYGMRAILLYYMWFLISTGDLHITRATAASIMAIYASMVYLSGTIGGFVADRIIGARPAV-----   88 (491)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSCCSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSCHHHHH-----
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchhhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhccccchHHH-----
Confidence            46777767666666666666677776654      78887765  8889999999999999999999 8998765     


Q ss_pred             HHHHHHHHHHHHHHHHh-hhhHHHHHHHHHHHHHHhhhhhhHHHHHHHhhCCCc--hhhHHHHHHhhhhhhHHhhhhHHH
Q 017754          208 MAVAQVVMAFALLYYAI-GWPGEIYVTTVLVGLSYGAHWAIVPAAASELFGLKS--FGALYNFLTLASPAGSLIFSGVIA  284 (366)
Q Consensus       208 ~~~~~~~~~~~~~l~~~-~~~~~l~~~~~l~G~~~g~~~~~~~~~~se~f~~~~--~g~~~g~~~~~~~~G~~i~gp~l~  284 (366)
                       ..+.++.+++.++++. .+...+++++++.|++.|...+...++++|.++.++  ++.++++.+....+|..+ +|.++
T Consensus        89 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~-~~~~~  166 (491)
T 4aps_A           89 -FWGGVLIMLGHIVLALPFGASALFGSIILIIIGTGFLKPNVSTLVGTLYDEHDRRRDAGFSIFVFGINLGAFI-APLIV  166 (491)
T ss_dssp             -HHHHHHHHHHHHHHHSCCSTTHHHHHHHHHHHHHHHHHHHHHHHHHHHSSSCTTHHHHHHHHHHHHHHHHHHH-HHHHH
T ss_pred             -HHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHhccchHHHHHHHHcCcccccceeeehHHHHHHHHHHHH-HHHHH
Confidence             6777777777777664 456678889999999999999999999999999988  888899999999999996 99999


Q ss_pred             HHHHhhhhhhhhhhhhhccCCCCCcccCCCCCCcccCCcchHHHHHHHHHHHHHHHHHHHHH
Q 017754          285 SGIYDYYAEKQAGLLWKYNGNMLPVSFRDQETPTCLGSICYSITCGIMAGLCIIAMVMSLIV  346 (366)
Q Consensus       285 G~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~g~~~~~~~f~i~~~~~~~~~~~~~~~  346 (366)
                      |++.+..+                                |++.|++.++.++++.++.++.
T Consensus       167 ~~l~~~~g--------------------------------~~~~f~~~~~~~~~~~~~~~~~  196 (491)
T 4aps_A          167 GAAQEAAG--------------------------------YHVAFSLAAIGMFIGLLVYYFG  196 (491)
T ss_dssp             HHHHHHSC--------------------------------HHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHhhhh--------------------------------HHHHHHHHHHHHHHHHHHHHHh
Confidence            99998776                                9999999887777766665544

>1pw4_A Glycerol-3-phosphate transporter; transmembrane, inner membrane, major facilitator superfamily, secondary active membrane transporter; 3.30A {Escherichia coli} SCOP: f.38.1.1

Probab=99.57  E-value=1.4e-14  Score=141.22  Aligned_cols=176  Identities=14%  Similarity=0.126  Sum_probs=140.9

Q ss_pred             hhhHHHHHHHHHHhhhhHHHHHhcHHHHHHHhCCChhHH--HHHHHHHHHhhhhhhhhhhhhhhhhhccCchhHHHHHHH
Q 017754          135 KADFLLLFFSLVLASGSGLTVIDNLGQICQSLGYADTSI--YVSMISIWNFLGRVGGGYFSEAIVRKFAYPRPVAMAVAQ  212 (366)
Q Consensus       135 ~~~~~ll~~~~~~~~~~~~~~~~~l~~i~~~~g~s~~~~--~vsl~~i~~~~g~~~~G~lsD~~grr~~~~R~~~~~~~~  212 (366)
                      .+.++.+++..++.......+...+|.+.+++ .+..+.  ..++..++..++.+++|+++||+|||+.+      .++.
T Consensus        27 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~s~~~~g~~~~~~~~~~~~~~~~~G~l~dr~g~r~~l------~~~~   99 (451)
T 1pw4_A           27 WQIFLGIFFGYAAYYLVRKNFALAMPYLVEQG-FSRGDLGFALSGISIAYGFSKFIMGSVSDRSNPRVFL------PAGL   99 (451)
T ss_dssp             HHHHHHHHHHHHHHHHHHTSHHHHHHHTTSST-TCSSCHHHHHHHHHHHHHHHHHHHHHHHHHSCHHHHH------HHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-ccHhHHHHHHHHHHHHHHHHHHhHHHHHHhcCchHHH------HHHH
Confidence            34455556666665555555667788888888 776655  88899999999999999999999998755      6777


Q ss_pred             HHHHHHHHHHHh----h-hhHHHHHHHHHHHHHHhhhhhhHHHHHHHhhCCCchhhHHHHHHhhhhhhHHhhhhHHHHHH
Q 017754          213 VVMAFALLYYAI----G-WPGEIYVTTVLVGLSYGAHWAIVPAAASELFGLKSFGALYNFLTLASPAGSLIFSGVIASGI  287 (366)
Q Consensus       213 ~~~~~~~~l~~~----~-~~~~l~~~~~l~G~~~g~~~~~~~~~~se~f~~~~~g~~~g~~~~~~~~G~~i~gp~l~G~l  287 (366)
                      ++.+++.++++.    . +...+++++++.|++.+..++...++++|+++.++|+.+.++.+....+|..+ +|.++|++
T Consensus       100 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~-g~~~~~~l  178 (451)
T 1pw4_A          100 ILAAAVMLFMGFVPWATSSIAVMFVLLFLCGWFQGMGWPPCGRTMVHWWSQKERGGIVSVWNCAHNVGGGI-PPLLFLLG  178 (451)
T ss_dssp             HHHHHHHHHHHHCHHHHSSSSHHHHHHHHHHHHHHHTHHHHHHHHHTTCTTTHHHHHHHHHHHHHHHHHTS-HHHHHHHH
T ss_pred             HHHHHHHHHHHhhhhccccHHHHHHHHHHHHHHhhhccchHHHHHHHHCCchhhhHHHHHHHHHHHHHHHH-HHHHHHHH
Confidence            777777766654    3 44578888999999999999999999999999999999999999999999996 99999998


Q ss_pred             HhhhhhhhhhhhhhccCCCCCcccCCCCCCcccCCcchHHHHHHHHHHHHHHHHHHHHHhhh
Q 017754          288 YDYYAEKQAGLLWKYNGNMLPVSFRDQETPTCLGSICYSITCGIMAGLCIIAMVMSLIVVHR  349 (366)
Q Consensus       288 ~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~g~~~~~~~f~i~~~~~~~~~~~~~~~~~~  349 (366)
                      .+..+                               +|++.|++.++++++..++.+++.++
T Consensus       179 ~~~~g-------------------------------~w~~~f~~~~~~~~~~~~~~~~~~~~  209 (451)
T 1pw4_A          179 MAWFN-------------------------------DWHAALYMPAFCAILVALFAFAMMRD  209 (451)
T ss_dssp             HHHTC-------------------------------CSTTCTHHHHHHHHHHHHHHHHHCCC
T ss_pred             HHHhc-------------------------------cHHHHHHHHHHHHHHHHHHHHhhccC
Confidence            86653                               29999999988887776666555443

>3o7q_A L-fucose-proton symporter; transporter, multi-PASS membrane protei transport protein; HET: BNG; 3.14A {Escherichia coli} PDB: 3o7p_A*

Probab=99.57  E-value=1e-13  Score=134.83  Aligned_cols=144  Identities=15%  Similarity=0.049  Sum_probs=119.5

Q ss_pred             HHHHHHHHHHhhhhHHHHHhcHHHHHHHhCCChhHH--HHHHHHHHHhhhhhhhhhhhhhhhhhccCchhHHHHHHHHHH
Q 017754          138 FLLLFFSLVLASGSGLTVIDNLGQICQSLGYADTSI--YVSMISIWNFLGRVGGGYFSEAIVRKFAYPRPVAMAVAQVVM  215 (366)
Q Consensus       138 ~~ll~~~~~~~~~~~~~~~~~l~~i~~~~g~s~~~~--~vsl~~i~~~~g~~~~G~lsD~~grr~~~~R~~~~~~~~~~~  215 (366)
                      ++.+.+.+++...........+|.+.+++|.+..+.  ..+...++..++.+.+|+++||+|||+.+      ..+.++.
T Consensus        28 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~i~~~~~G~l~dr~g~r~~l------~~~~~~~  101 (438)
T 3o7q_A           28 FALLCSLFFLWAVANNLNDILLPQFQQAFTLTNFQAGLIQSAFYFGYFIIPIPAGILMKKLSYKAGI------ITGLFLY  101 (438)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHSCCCSHHHHHHHHHHHHHHHTTHHHHHHHHHHSCHHHHH------HHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHhHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHhHHHHHHHhcchHHH------HHHHHHH
Confidence            344444444444444556667888999999988776  88899999999999999999999998765      6777777


Q ss_pred             HHHHHHH---H-hhhhHHHHHHHHHHHHHHhhhhhhHHHHHHHhhCCCchhhHHHHHHhhhhhhHHhhhhHHHHHHH
Q 017754          216 AFALLYY---A-IGWPGEIYVTTVLVGLSYGAHWAIVPAAASELFGLKSFGALYNFLTLASPAGSLIFSGVIASGIY  288 (366)
Q Consensus       216 ~~~~~l~---~-~~~~~~l~~~~~l~G~~~g~~~~~~~~~~se~f~~~~~g~~~g~~~~~~~~G~~i~gp~l~G~l~  288 (366)
                      +++.++.   . ..+...+++++++.|++.|...+...++++|.++.++|+.+.++.+....+|..+ +|.+++.+.
T Consensus       102 ~~~~~~~~~~~~~~~~~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~-g~~~~~~l~  177 (438)
T 3o7q_A          102 ALGAALFWPAAEIMNYTLFLVGLFIIAAGLGCLETAANPFVTVLGPESSGHFRLNLAQTFNSFGAII-AVVFGQSLI  177 (438)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCSTTHHHHHHHHHHHHHHHHHH-HHHHTTHHH
T ss_pred             HHHHHHHHhccccccHHHHHHHHHHHHhhHHHhhhhHHHHHHHHcCchhHHHHHHHHHHHHHHHHHH-HHHHHHHHH
Confidence            7777665   4 3456678889999999999999999999999999999999999999999999996 999999988

>2gfp_A EMRD, multidrug resistance protein D; membrane protein, multidrug transporter; 3.50A {Escherichia coli}

Probab=99.57  E-value=2.8e-14  Score=136.34  Aligned_cols=170  Identities=10%  Similarity=0.128  Sum_probs=138.7

Q ss_pred             HHHHHHHHhhhhHHHHHhcHHHHHHHhCCChhHH--HHHHHHHHHhhhhhhhhhhhhhhhhhccCchhHHHHHHHHHHHH
Q 017754          140 LLFFSLVLASGSGLTVIDNLGQICQSLGYADTSI--YVSMISIWNFLGRVGGGYFSEAIVRKFAYPRPVAMAVAQVVMAF  217 (366)
Q Consensus       140 ll~~~~~~~~~~~~~~~~~l~~i~~~~g~s~~~~--~vsl~~i~~~~g~~~~G~lsD~~grr~~~~R~~~~~~~~~~~~~  217 (366)
                      ++++..++.......+...+|.+.+++|.+..+.  ..+...++..++.+.+|+++||+|||+..      ..+.++.++
T Consensus         4 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~------~~~~~~~~~   77 (375)
T 2gfp_A            4 MLVLLVAVGQMAQTIYIPAIADMARDLNVREGAVQSVMGAYLLTYGVSQLFYGPISDRVGRRPVI------LVGMSIFML   77 (375)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHTTSSSTTHHHHHHHHHHHHHHHHHHTTHHHHHTTSCCCCCC------HHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHhhhhHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchhH------HHHHHHHHH
Confidence            3444555555555566677888899999988765  78899999999999999999999999888      677777777


Q ss_pred             HHHHHH-hhhhHHHHHHHHHHHHHHhhhhhhHHHHHHHhhCCCchhhHHHHHHhhhhhhHHhhhhHHHHHHHhhhhhhhh
Q 017754          218 ALLYYA-IGWPGEIYVTTVLVGLSYGAHWAIVPAAASELFGLKSFGALYNFLTLASPAGSLIFSGVIASGIYDYYAEKQA  296 (366)
Q Consensus       218 ~~~l~~-~~~~~~l~~~~~l~G~~~g~~~~~~~~~~se~f~~~~~g~~~g~~~~~~~~G~~i~gp~l~G~l~d~~~~~~~  296 (366)
                      +.++.. ..+...+++.+++.|++.+...+...++++|.+++++|+...++.+....+|..+ +|.+++++.+..+    
T Consensus        78 ~~~~~~~~~~~~~l~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~-~~~~~~~l~~~~~----  152 (375)
T 2gfp_A           78 ATLVAVTTSSLTVLIAASAMQGMGTGVGGVMARTLPRDLYERTQLRHANSLLNMGILVSPLL-APLIGGLLDTMWN----  152 (375)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSSCCSHHHHHHHHHHHHHHH-HHHHHHHSSCHHH----
T ss_pred             HHHHHHHhccHHHHHHHHHHHHHHHHhhhhhHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHh-hHHHHHHHHHhcc----
Confidence            766655 3455677888999999999999999999999999999999999999999999996 9999999998776    


Q ss_pred             hhhhhccCCCCCcccCCCCCCcccCCcchHHHHHHHHHHHHHHHHHHHHHhh
Q 017754          297 GLLWKYNGNMLPVSFRDQETPTCLGSICYSITCGIMAGLCIIAMVMSLIVVH  348 (366)
Q Consensus       297 ~~~~~~~~~~~~~~~~~~~~~~c~g~~~~~~~f~i~~~~~~~~~~~~~~~~~  348 (366)
                                                  |++.|++.++.+++..+......+
T Consensus       153 ----------------------------~~~~~~~~~~~~~~~~~~~~~~~~  176 (375)
T 2gfp_A          153 ----------------------------WRACYLFLLVLCAGVTFSMARWMP  176 (375)
T ss_dssp             ----------------------------HHHHHHHHHHHHHHHHCCCCCSSC
T ss_pred             ----------------------------HHHHHHHHHHHHHHHHHHHHHHCc
Confidence                                        999999888777666554433333

>3o7q_A L-fucose-proton symporter; transporter, multi-PASS membrane protei transport protein; HET: BNG; 3.14A {Escherichia coli} PDB: 3o7p_A*

Probab=99.55  E-value=2.3e-13  Score=132.28  Aligned_cols=155  Identities=12%  Similarity=0.084  Sum_probs=121.6

Q ss_pred             HHHHhhhhhHHHHHHHHHHhhhhHHHHHhcHHHH-HHHh-CCChhHH--HHHHHHHHHhhhhhhhhhhhhhhhhhccCch
Q 017754          129 LPQALMKADFLLLFFSLVLASGSGLTVIDNLGQI-CQSL-GYADTSI--YVSMISIWNFLGRVGGGYFSEAIVRKFAYPR  204 (366)
Q Consensus       129 ~~~~l~~~~~~ll~~~~~~~~~~~~~~~~~l~~i-~~~~-g~s~~~~--~vsl~~i~~~~g~~~~G~lsD~~grr~~~~R  204 (366)
                      +++.++++.+|...+..++.......+..++|.+ .++. |++....  ..++..++..+++++.|+++||++||+..  
T Consensus       251 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~~r~~~~~~~--  328 (438)
T 3o7q_A          251 LSRLARIRHWRWAVLAQFCYVGAQTACWSYLIRYAVEEIPGMTAGFAANYLTGTMVCFFIGRFTGTWLISRFAPHKVL--  328 (438)
T ss_dssp             HHHHTTCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCHHHHH--
T ss_pred             HHHHHhChHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHH--
Confidence            4566778889988888888777777888899998 7775 9887665  77788899999999999999999987644  


Q ss_pred             hHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHhhhhhhHHHHHHHhhCCCchhhHHHHHHhhhhhhHHhhhhHHH
Q 017754          205 PVAMAVAQVVMAFALLYYAIGWPGEIYVTTVLVGLSYGAHWAIVPAAASELFGLKSFGALYNFLTLASPAGSLIFSGVIA  284 (366)
Q Consensus       205 ~~~~~~~~~~~~~~~~l~~~~~~~~l~~~~~l~G~~~g~~~~~~~~~~se~f~~~~~g~~~g~~~~~~~~G~~i~gp~l~  284 (366)
                          ..+.++.+++.+++.........+..++.|++.+..++...++..|.++++ ++.+.++.. ...+|+.+ +|.+.
T Consensus       329 ----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~-~~~~g~~~-~~~~~  401 (438)
T 3o7q_A          329 ----AAYALIAMALCLISAFAGGHVGLIALTLCSAFMSIQYPTIFSLGIKNLGQD-TKYGSSFIV-MTIIGGGI-VTPVM  401 (438)
T ss_dssp             ----HHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHTTHHHHHHHHHHSSCGGG-HHHHHHHHH-HTTHHHHH-HHHHH
T ss_pred             ----HHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHHHHHHHHHHhhcccc-ccchhhHHH-HHHHHHHH-HHHHH
Confidence                555566666665555433334455567888999988999999989999866 788888776 55688886 99999


Q ss_pred             HHHHhhhh
Q 017754          285 SGIYDYYA  292 (366)
Q Consensus       285 G~l~d~~~  292 (366)
                      |++.|..+
T Consensus       402 g~l~~~~g  409 (438)
T 3o7q_A          402 GFVSDAAG  409 (438)
T ss_dssp             HHHHHHHT
T ss_pred             HHHHHHhc
Confidence            99999886

>2xut_A Proton/peptide symporter family protein; transport protein, membrane protein, major facilitator super transporter; 3.62A {Shewanella oneidensis}

Probab=99.49  E-value=3e-13  Score=135.11  Aligned_cols=170  Identities=13%  Similarity=0.109  Sum_probs=133.8

Q ss_pred             hhHHHHHHHHHHhhhhHHHHHhcHHHHH-HHhC------CChhHH--HHHHHHHHHhhhhhhhhhhhhhh-hhhccCchh
Q 017754          136 ADFLLLFFSLVLASGSGLTVIDNLGQIC-QSLG------YADTSI--YVSMISIWNFLGRVGGGYFSEAI-VRKFAYPRP  205 (366)
Q Consensus       136 ~~~~ll~~~~~~~~~~~~~~~~~l~~i~-~~~g------~s~~~~--~vsl~~i~~~~g~~~~G~lsD~~-grr~~~~R~  205 (366)
                      +.+|.+++..++.....+....+++.+. +++|      ++....  ..+.+.++..++.+++|+++||+ |||+.+   
T Consensus        12 ~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~s~~~~g~~~~~~~~~~~~~~~~~G~l~dr~~g~r~~~---   88 (524)
T 2xut_A           12 RQIPYIIASEACERFSFYGMRNILTPFLMTALLLSIPEELRGAVAKDVFHSFVIGVYFFPLLGGWIADRFFGKYNTI---   88 (524)
T ss_dssp             -CCTHHHHHHHHHHHHHHHHHHHHHHHHHHSCSSCCSSSTTTTTHHHHHHHHHHHHHHTHHHHHHHHTTSSCSHHHH---
T ss_pred             cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHH---
Confidence            3466666666666666666667777665 4578      877655  78889999999999999999999 987755   


Q ss_pred             HHHHHHHHHHHHHHHHHHh-h-hhHHHHHHHHHHHHHHhhhhhhHHHHHHHhhCCCchhhHHHH---HHhhhhhhHHhhh
Q 017754          206 VAMAVAQVVMAFALLYYAI-G-WPGEIYVTTVLVGLSYGAHWAIVPAAASELFGLKSFGALYNF---LTLASPAGSLIFS  280 (366)
Q Consensus       206 ~~~~~~~~~~~~~~~l~~~-~-~~~~l~~~~~l~G~~~g~~~~~~~~~~se~f~~~~~g~~~g~---~~~~~~~G~~i~g  280 (366)
                         .++.++.+++.+++.. . +...+++++++.|++.+...+...++++|.++.++++...+.   .+....+|..+ +
T Consensus        89 ---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~g~~~-g  164 (524)
T 2xut_A           89 ---LWLSLIYCVGHAFLAIFEHSVQGFYTGLFLIALGSGGIKPLVSSFMGDQFDQSNKSLAQKAFDMFYFTINFGSFF-A  164 (524)
T ss_dssp             ---HHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHHHHHTTHHHHHHHHHHTCSTTTTTHHHHHHHHHHHHHHHHHHH-H
T ss_pred             ---HHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHhccccchhHHHHHHHHcCccchHHHHHHHHHHHHHHHHHHHH-H
Confidence               6666777777666653 4 566788889999999999999999999999999998765544   88899999996 9


Q ss_pred             hHHHHHHHhhhhhhhhhhhhhccCCCCCcccCCCCCCcccCCcchHHHHHHHHHHHHHHHHHHH
Q 017754          281 GVIASGIYDYYAEKQAGLLWKYNGNMLPVSFRDQETPTCLGSICYSITCGIMAGLCIIAMVMSL  344 (366)
Q Consensus       281 p~l~G~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~g~~~~~~~f~i~~~~~~~~~~~~~  344 (366)
                      |.++|++.+..+                                |++.|++.+++.+++.++.+
T Consensus       165 ~~~~~~l~~~~g--------------------------------~~~~f~~~~~~~~~~~~~~~  196 (524)
T 2xut_A          165 SLSMPLLLKNFG--------------------------------AAVAFGIPGVLMFVATVFFW  196 (524)
T ss_dssp             HHTSTHHHHTSC--------------------------------HHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHhcccc--------------------------------HHHHHHHHHHHHHHHHHHHH
Confidence            999999988765                                99999988877766655543

>2cfq_A Lactose permease; transport, transport mechanism, lactose/H+ symport, sugar transport, transmembrane, formylation; 2.95A {Escherichia coli} SCOP: f.38.1.2 PDB: 1pv7_A* 1pv6_A 2cfp_A 2v8n_A 2y5y_A*

Probab=99.46  E-value=7.3e-13  Score=129.17  Aligned_cols=181  Identities=10%  Similarity=0.047  Sum_probs=127.4

Q ss_pred             HHHHhhhhhHHHHHHHHHHhhhhHHHHHhcHHHHHHHh-CCC---hhH--HHHHHHHHHHhhhhhhhhhhhhhhhhhccC
Q 017754          129 LPQALMKADFLLLFFSLVLASGSGLTVIDNLGQICQSL-GYA---DTS--IYVSMISIWNFLGRVGGGYFSEAIVRKFAY  202 (366)
Q Consensus       129 ~~~~l~~~~~~ll~~~~~~~~~~~~~~~~~l~~i~~~~-g~s---~~~--~~vsl~~i~~~~g~~~~G~lsD~~grr~~~  202 (366)
                      +++.++++++|.+.+..++.......+..++|.+..+. +..   ...  ...++..++..++.++.|+++||++||+..
T Consensus       213 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~~~~l  292 (417)
T 2cfq_A          213 ALELFRQPKLWFLSLYVIGVSCTYDVFDQQFANFFTSFFATGEQGTRVFGYVTTMGELLNASIMFFAPLIINRIGGKNAL  292 (417)
T ss_dssp             HHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSSSHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHH
T ss_pred             HHHHhcCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHhcHHHHH
Confidence            35677888888766554444333334445677776553 321   111  145566678888999999999999987644


Q ss_pred             chhHHHHHHHHHHHHHHHHHHh-hhhHHHHHHHHHHHHHHhhhhhhHHHHHHHhhCCCchhhHHHHH-HhhhhhhHHhhh
Q 017754          203 PRPVAMAVAQVVMAFALLYYAI-GWPGEIYVTTVLVGLSYGAHWAIVPAAASELFGLKSFGALYNFL-TLASPAGSLIFS  280 (366)
Q Consensus       203 ~R~~~~~~~~~~~~~~~~l~~~-~~~~~l~~~~~l~G~~~g~~~~~~~~~~se~f~~~~~g~~~g~~-~~~~~~G~~i~g  280 (366)
                            ..+.++++++.+++.. .+...+++..++.+++.+...+....+++|.+|++.+|+++++. +....+|+.+ +
T Consensus       293 ------~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~lg~~~-g  365 (417)
T 2cfq_A          293 ------LLAGTIMSVRIIGSSFATSALEVVILKTLHMFEVPFLLVGCFKYITSQFEVRFSATIYLVCFCFFKQLAMIF-M  365 (417)
T ss_dssp             ------HHHHHHHHHHHHHHTTCCSHHHHHHHTTHHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHTTTHHHHHHH-H
T ss_pred             ------HHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHhHHHHH-h
Confidence                  4555566665555543 33444555556667776666666778999999999999999994 8888899996 9


Q ss_pred             hHHHHHHHhhhhhhhhhhhhhccCCCCCcccCCCCCCcccCCcchHHHHHHHHHHHHHHHHHHHHHhh
Q 017754          281 GVIASGIYDYYAEKQAGLLWKYNGNMLPVSFRDQETPTCLGSICYSITCGIMAGLCIIAMVMSLIVVH  348 (366)
Q Consensus       281 p~l~G~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~g~~~~~~~f~i~~~~~~~~~~~~~~~~~  348 (366)
                      |.++|+++|..+                                |...|.+.+++++++.++.+.+.+
T Consensus       366 p~l~G~l~~~~g--------------------------------~~~~f~~~~~~~l~~~~~~~~~~~  401 (417)
T 2cfq_A          366 SVLAGNMYESIG--------------------------------FQGAYLVLGLVALGFTLISVFTLS  401 (417)
T ss_dssp             THHHHTHHHHSH--------------------------------HHHHHHHHHHHHHHHHHHHTTSSC
T ss_pred             hhhHHHHHHhcC--------------------------------cHHHHHHHHHHHHHHHHHHHhhhc
Confidence            999999999776                                888999888888887766554443

>4gc0_A D-xylose-proton symporter; MFS, transport protein; HET: 6BG BNG; 2.60A {Escherichia coli} PDB: 4gbz_A* 4gby_A*

Probab=99.32  E-value=2.1e-11  Score=120.32  Aligned_cols=173  Identities=12%  Similarity=0.006  Sum_probs=116.7

Q ss_pred             hhhHHHHHhcHHHHHHHhCCChhHH--HHHHHHHHHhhhhhhhhhhhhhhhhhccCchhHHHHHHHHHHHHHHHHHH---
Q 017754          149 SGSGLTVIDNLGQICQSLGYADTSI--YVSMISIWNFLGRVGGGYFSEAIVRKFAYPRPVAMAVAQVVMAFALLYYA---  223 (366)
Q Consensus       149 ~~~~~~~~~~l~~i~~~~g~s~~~~--~vsl~~i~~~~g~~~~G~lsD~~grr~~~~R~~~~~~~~~~~~~~~~l~~---  223 (366)
                      ......+..+.+++.+..+.+....  ...+.++...++.++.+++.||+|||+..      ..+...++++.+.+.   
T Consensus       290 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~dr~Grr~~~------~~~~~~~~~~~~~l~~~~  363 (491)
T 4gc0_A          290 FVGINVVLYYAPEVFKTLGASTDIALLQTIIVGVINLTFTVLAIMTVDKFGRKPLQ------IIGALGMAIGMFSLGTAF  363 (491)
T ss_dssp             HTCHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCSHHHH------HHHHHHHHHHHHHHHHHH
T ss_pred             HhhhhHHHhcchHHHHhcCCCccchhhHHHHHHHHHHHHHHHHHHHHHhhcCcchh------ccchHHHHHHHHHHHHHH
Confidence            3334455667778888888776554  55667788889999999999999998655      344444444433332   


Q ss_pred             -hhhh-HHHHHHHHHHHHHHh-hhhhhHHHHHHHhhCCCchhhHHHHHHhhhhhhHHhhhhHHHHHHHhhhhhhhhhhhh
Q 017754          224 -IGWP-GEIYVTTVLVGLSYG-AHWAIVPAAASELFGLKSFGALYNFLTLASPAGSLIFSGVIASGIYDYYAEKQAGLLW  300 (366)
Q Consensus       224 -~~~~-~~l~~~~~l~G~~~g-~~~~~~~~~~se~f~~~~~g~~~g~~~~~~~~G~~i~gp~l~G~l~d~~~~~~~~~~~  300 (366)
                       ...+ ....+..+++..+++ +..++.+.+.+|+||++.|+++.|+.+..+.+|+.+ ++.+...+.+.......    
T Consensus       364 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~fPt~~R~~~~g~~~~~~~~~~~i-~~~~~p~l~~~~~~~~~----  438 (491)
T 4gc0_A          364 YTQAPGIVALLSMLFYVAAFAMSWGPVCWVLLSEIFPNAIRGKALAIAVAAQWLANYF-VSWTFPMMDKNSWLVAH----  438 (491)
T ss_dssp             HTTCCHHHHHHHHHHHHHHHHTTTTHHHHHHHHHSSCTTTHHHHHHHHHHHHHHHHHH-HHTHHHHHCHHHHHHHH----
T ss_pred             hcccchHHHHHHHHHHHHHHHhHHHHHHHHHHHHhCCHhHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHhh----
Confidence             1112 222222333322322 234567789999999999999999999999999996 78888777654321100    


Q ss_pred             hccCCCCCcccCCCCCCcccCCcchHHHHHHHHHHHHHHHHHHHHHhhhchHHH
Q 017754          301 KYNGNMLPVSFRDQETPTCLGSICYSITCGIMAGLCIIAMVMSLIVVHRTKSVY  354 (366)
Q Consensus       301 ~~~~~~~~~~~~~~~~~~c~g~~~~~~~f~i~~~~~~~~~~~~~~~~~~~r~~~  354 (366)
                                            ..+...|++.+++++++++..+++.++||.+.
T Consensus       439 ----------------------~~~~~~~~i~~~~~~~~~i~~~~~~PETkg~t  470 (491)
T 4gc0_A          439 ----------------------FHNGFSYWIYGCMGVLAALFMWKFVPETKGKT  470 (491)
T ss_dssp             ----------------------HTTCHHHHHHHHHHHHHHHHHHHHCCCCTTCC
T ss_pred             ----------------------hhhhHHHHHHHHHHHHHHHHHHheecCCCCCC
Confidence                                  01556788999999999988888888887654

>4gc0_A D-xylose-proton symporter; MFS, transport protein; HET: 6BG BNG; 2.60A {Escherichia coli} PDB: 4gbz_A* 4gby_A*

Probab=99.27  E-value=8.4e-11  Score=116.06  Aligned_cols=129  Identities=19%  Similarity=0.214  Sum_probs=101.4

Q ss_pred             HHhcHHHHHHHhCCC----hh--H----HHHHHHHHHHhhhhhhhhhhhhhhhhhccCchhHHHHHHHHHHHHHHHHHH-
Q 017754          155 VIDNLGQICQSLGYA----DT--S----IYVSMISIWNFLGRVGGGYFSEAIVRKFAYPRPVAMAVAQVVMAFALLYYA-  223 (366)
Q Consensus       155 ~~~~l~~i~~~~g~s----~~--~----~~vsl~~i~~~~g~~~~G~lsD~~grr~~~~R~~~~~~~~~~~~~~~~l~~-  223 (366)
                      +...+|.+.++++.+    ..  +    ..++.+.++..+|.+++|+++||+|||+.+      .++.+++.++.++.+ 
T Consensus        31 i~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~s~~~~G~~iG~~~~G~laDr~GRk~~l------~~~~~l~~i~~i~~a~  104 (491)
T 4gc0_A           31 ISGTVESLNTVFVAPQNLSESAANSLLGFCVASALIGCIIGGALGGYCSNRFGRRDSL------KIAAVLFFISGVGSAW  104 (491)
T ss_dssp             GGGTHHHHHHHHTGGGCCCHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHTCHHHHH------HHHHHHHHHHHHHHHC
T ss_pred             HHHHHHHHHHHhcCCCCCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHH------HHHHHHHHHHHHHHHH
Confidence            334577777666432    11  1    167778899999999999999999998876      677777777766654 


Q ss_pred             ------------------hhhhHHHHHHHHHHHHHHhhhhhhHHHHHHHhhCCCchhhHHHHHHhhhhhhHHhhhhHHHH
Q 017754          224 ------------------IGWPGEIYVTTVLVGLSYGAHWAIVPAAASELFGLKSFGALYNFLTLASPAGSLIFSGVIAS  285 (366)
Q Consensus       224 ------------------~~~~~~l~~~~~l~G~~~g~~~~~~~~~~se~f~~~~~g~~~g~~~~~~~~G~~i~gp~l~G  285 (366)
                                        ..+...+++++++.|++.|+..+..+.+++|..|+++|+...++...+..+|..+ ++.+..
T Consensus       105 ~~~~~~~~~~~~~~~~~~a~~~~~l~~~R~l~G~g~G~~~~~~~~~i~E~~p~~~rg~~~~~~~~~~~~g~~~-~~~~~~  183 (491)
T 4gc0_A          105 PELGFTSINPDNTVPVYLAGYVPEFVIYRIIGGIGVGLASMLSPMYIAELAPAHIRGKLVSFNQFAIIFGQLL-VYCVNY  183 (491)
T ss_dssp             TTTTTSCSSSSSSCCGGGGGCHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCGGGHHHHHHHHHHHHHHHHHH-HHHHHH
T ss_pred             HhhhhhhhcchhHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCHHhhhhhHHhhhhhhhhhhhh-hhhcch
Confidence                              2355678999999999999999999999999999999999999999999999885 666655


Q ss_pred             HHHhh
Q 017754          286 GIYDY  290 (366)
Q Consensus       286 ~l~d~  290 (366)
                      .+.+.
T Consensus       184 ~~~~~  188 (491)
T 4gc0_A          184 FIARS  188 (491)
T ss_dssp             HHHTT
T ss_pred             hhccc
Confidence            55443

>4aps_A DI-OR tripeptide H+ symporter; transport protein, peptide transport, major facilitator SUPE transporter, MFS; 3.30A {Streptococcus thermophilus}

Probab=99.21  E-value=1.8e-10  Score=113.75  Aligned_cols=180  Identities=14%  Similarity=0.064  Sum_probs=122.1

Q ss_pred             HHHHHHHHHHhhhhHHHHHhcHHHHHHH-hCCCh--hHHHHHHHHHHHhhhhhhhhhhhhhhhhhccCchhHHHHHHHHH
Q 017754          138 FLLLFFSLVLASGSGLTVIDNLGQICQS-LGYAD--TSIYVSMISIWNFLGRVGGGYFSEAIVRKFAYPRPVAMAVAQVV  214 (366)
Q Consensus       138 ~~ll~~~~~~~~~~~~~~~~~l~~i~~~-~g~s~--~~~~vsl~~i~~~~g~~~~G~lsD~~grr~~~~R~~~~~~~~~~  214 (366)
                      ++.+++..++..........+++.+.++ .+.+.  .....++..++..++.++.|+++||++||+.. +...+..+.++
T Consensus       285 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~r~~~r~~~-~~~~~~~~~~~  363 (491)
T 4aps_A          285 YIPLFIAAVLFWAIEEQGSVVLATFAAERVDSSWFPVSWFQSLNPLFIMLYTPFFAWLWTAWKKNQPS-SPTKFAVGLMF  363 (491)
T ss_dssp             HHHHHHHHHHHHHHHGGGGTHHHHHHHHSCCCSSSCSGGGTTHHHHHHHHHHHHHHHHHHHTTTC----CHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHhhccHHHHHHHHHHhccCccCHHHHhccchHHHHHHHHHHHHHHHHHhccCCC-chHHHHHHHHH
Confidence            3444434344334444455667777765 45542  22366777788888999999999999998654 33344456666


Q ss_pred             HHHHHHHHHhh----------hhHHHHHHHHHHHHHHhhhhhhHHHHHHHhhCCCchhhHHHHHHhhhhhhHHhhhhHHH
Q 017754          215 MAFALLYYAIG----------WPGEIYVTTVLVGLSYGAHWAIVPAAASELFGLKSFGALYNFLTLASPAGSLIFSGVIA  284 (366)
Q Consensus       215 ~~~~~~l~~~~----------~~~~l~~~~~l~G~~~g~~~~~~~~~~se~f~~~~~g~~~g~~~~~~~~G~~i~gp~l~  284 (366)
                      ++++++++...          +...+.+..++.|++.+...+...+++.|.+|.+.+|++.|+.++...+|..+ +|.+.
T Consensus       364 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~i-~~~~~  442 (491)
T 4aps_A          364 AGLSFLLMAIPGALYGTSGKVSPLWLVGSWALVILGEMLISPVGLSVTTKLAPKAFNSQMMSMWFLSSSVGSAL-NAQLV  442 (491)
T ss_dssp             HHHHHTTTHHHHHHCCCCTTCCTHHHHHHHHHHHHHHHTTTTHHHHHHHHHTTTTCSSSSTHHHHHHHHHHHHH-HHHHG
T ss_pred             HHHHHHHHHHHHHhcCCCCCccHHHHHHHHHHHHHHHHHHhHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHH-HHHHH
Confidence            66665554321          33456667778899888888888999999999999999999999999999996 89988


Q ss_pred             HHHHhhhhhhhhhhhhhccCCCCCcccCCCCCCcccCCcchHHHHHHHHHHHHHHHHHHHHHhhhchH
Q 017754          285 SGIYDYYAEKQAGLLWKYNGNMLPVSFRDQETPTCLGSICYSITCGIMAGLCIIAMVMSLIVVHRTKS  352 (366)
Q Consensus       285 G~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~g~~~~~~~f~i~~~~~~~~~~~~~~~~~~~r~  352 (366)
                      |++.|. +                                +...|++.+++++++.++.+++.++.++
T Consensus       443 ~~~~~~-~--------------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~  477 (491)
T 4aps_A          443 TLYNAK-S--------------------------------EVAYFSYFGLGSVVLGIVLVFLSKRIQG  477 (491)
T ss_dssp             GGGGGS-S--------------------------------TTHHHHHTHHHHHHHHHHHHHC------
T ss_pred             HHHhcc-c--------------------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            887653 2                                6667888888887777766665555443

>2gfp_A EMRD, multidrug resistance protein D; membrane protein, multidrug transporter; 3.50A {Escherichia coli}

Probab=99.17  E-value=2.3e-11  Score=115.97  Aligned_cols=156  Identities=12%  Similarity=0.044  Sum_probs=116.9

Q ss_pred             CCHHHHhhhhhHHHHHHHHHHhhhhHHHHHhcHHHHHHH-hCCChhHH--HHHHHHHHHhhhhhhhhhhhhhhhhhccCc
Q 017754          127 FTLPQALMKADFLLLFFSLVLASGSGLTVIDNLGQICQS-LGYADTSI--YVSMISIWNFLGRVGGGYFSEAIVRKFAYP  203 (366)
Q Consensus       127 ~~~~~~l~~~~~~ll~~~~~~~~~~~~~~~~~l~~i~~~-~g~s~~~~--~vsl~~i~~~~g~~~~G~lsD~~grr~~~~  203 (366)
                      .++++.++++.+|.+.+..++.......+..++|.+.++ +|++....  ..+...++..+++++.|+++||++++.   
T Consensus       190 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~l~~r~~~~~---  266 (375)
T 2gfp_A          190 TSYKTLFGNSGFNCYLLMLIGGLAGIAAFEACSGVLMGAVLGLSSMTVSILFILPIPAAFFGAWFAGRPNKRFSTLM---  266 (375)
T ss_dssp             TCSTHHHHHHHHHHHHHHHHHHHHHHHHHHHHCSCSSHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHTTTTHHHHHH---
T ss_pred             HHHHHHhcCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---
Confidence            356788899999988888777777666777777877766 78776554  677788888999999999999987621   


Q ss_pred             hhHHHHHHHHH-HHHHHH--HHHh---hhhHHHHHHHHHHHHHHhhhhhhHHHHHHHhhCCCchhhHHHHHHhhhhhhHH
Q 017754          204 RPVAMAVAQVV-MAFALL--YYAI---GWPGEIYVTTVLVGLSYGAHWAIVPAAASELFGLKSFGALYNFLTLASPAGSL  277 (366)
Q Consensus       204 R~~~~~~~~~~-~~~~~~--l~~~---~~~~~l~~~~~l~G~~~g~~~~~~~~~~se~f~~~~~g~~~g~~~~~~~~G~~  277 (366)
                           ..+..+ ...+..  .+..   .+...+++..++.|++.+..++...+.+.|.+| +++|++.|+.+....+|..
T Consensus       267 -----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~p-~~~g~~~g~~~~~~~~g~~  340 (375)
T 2gfp_A          267 -----WQSVICCLLAGLLMWIPDWFGVMNVWTLLVPAALFFFGAGMLFPLATSGAMEPFP-FLAGTAGALVGGLQNIGSG  340 (375)
T ss_dssp             -----HHHHHHHHHTSSSSSHHHHHHHHHHHHHHHHHHHHHHHHHHTSSTTHHHHHTHHH-HHHHHHHHHHHHHHHHHHH
T ss_pred             -----HHHHHHHHHHHHHHHHHhhhccccHHHHHHHHHHHHHHHHHhhHHHHHHHHHhCC-cccchHHHHHHHHHHHHHH
Confidence                 111111 122211  1111   233445567778899999888999999999998 8999999999999999999


Q ss_pred             hhhhHHHHHHHhhhh
Q 017754          278 IFSGVIASGIYDYYA  292 (366)
Q Consensus       278 i~gp~l~G~l~d~~~  292 (366)
                      + +|.+.|.+.+..+
T Consensus       341 ~-~~~~~g~l~~~~~  354 (375)
T 2gfp_A          341 V-LASLSAMLPQTGQ  354 (375)
T ss_dssp             C-CSTTCTHHHHHHH
T ss_pred             H-HHHHHHHHhcCCc
Confidence            6 9999999988665

>2cfq_A Lactose permease; transport, transport mechanism, lactose/H+ symport, sugar transport, transmembrane, formylation; 2.95A {Escherichia coli} SCOP: f.38.1.2 PDB: 1pv7_A* 1pv6_A 2cfp_A 2v8n_A 2y5y_A*

Probab=99.05  E-value=3.5e-11  Score=117.21  Aligned_cols=149  Identities=12%  Similarity=0.058  Sum_probs=94.0

Q ss_pred             HhhhhhHHHHHHHHHHhhhhHHHHHhcHHHHHHH-hCCChhHH--HHHHHHHHHhhhhhhhhhhhhhhhhhccCchhHHH
Q 017754          132 ALMKADFLLLFFSLVLASGSGLTVIDNLGQICQS-LGYADTSI--YVSMISIWNFLGRVGGGYFSEAIVRKFAYPRPVAM  208 (366)
Q Consensus       132 ~l~~~~~~ll~~~~~~~~~~~~~~~~~l~~i~~~-~g~s~~~~--~vsl~~i~~~~g~~~~G~lsD~~grr~~~~R~~~~  208 (366)
                      .++++.+|.+....++.......+...+|.+.++ +|++..+.  ..+...++..++++++|+++||+|||+.+      
T Consensus         3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~g~s~~~~g~~~~~~~~~~~i~~~~~G~lsDr~Grr~~l------   76 (417)
T 2cfq_A            3 YLKNTNFWMFGLFFFFYFFIMGAYFPFFPIWLHDINHISKSDTGIIFAAISLFSLLFQPLFGLLSDKLGLRKYL------   76 (417)
T ss_dssp             TTSCHHHHHHHHHHHHHHHHHHHHTTTHHHHHHTTTCCCTTTSHHHHHHHHHHHHHHHHHHHHHHTTSTTCCHH------
T ss_pred             cccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHH------
Confidence            4688899988777666655555666778887765 79887654  88888999999999999999999998765      


Q ss_pred             HHHHHHHHH---HHHHHHhhhh--HHHHHHHHHHHHHHh----hhhhhHHHHHHHhhCCCchhhHHHHHHhhhhhhHHhh
Q 017754          209 AVAQVVMAF---ALLYYAIGWP--GEIYVTTVLVGLSYG----AHWAIVPAAASELFGLKSFGALYNFLTLASPAGSLIF  279 (366)
Q Consensus       209 ~~~~~~~~~---~~~l~~~~~~--~~l~~~~~l~G~~~g----~~~~~~~~~~se~f~~~~~g~~~g~~~~~~~~G~~i~  279 (366)
                      ..+..+.++   ..+.......  ...+...++.+++.|    ...+....+..+.  .++++..+|.......+|..+ 
T Consensus        77 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~--~~~~~~~~g~~~~~~~~g~~~-  153 (417)
T 2cfq_A           77 LWIITGMLVMFAPFFIFIFGPLLQYNILVGSIVGGIYLGFCFNAGAPAVEAFIEKV--SRRSNFEFGRARMFGCVGWAL-  153 (417)
T ss_dssp             HHHHHHTTSCHHHHHHHTHHHHHHTTCCHHHHGGGSSTTHHHHTTHHHHHHHHHHH--HHHHTCCHHHHSSSTTTHHHH-
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHh--hhhcccchHHHHHHHHHHHHH-
Confidence            333332222   1111111100  011122222222222    2223333333332  245677888888888999986 


Q ss_pred             hhHHHHHHHh
Q 017754          280 SGVIASGIYD  289 (366)
Q Consensus       280 gp~l~G~l~d  289 (366)
                      +|.++|++.+
T Consensus       154 ~~~l~~~l~~  163 (417)
T 2cfq_A          154 GASIVGIMFT  163 (417)
T ss_dssp             HHHHHHHHHH
T ss_pred             HHHHHHHHHH
Confidence            9999999986

>2xut_A Proton/peptide symporter family protein; transport protein, membrane protein, major facilitator super transporter; 3.62A {Shewanella oneidensis}

Probab=98.58  E-value=1.2e-07  Score=94.39  Aligned_cols=84  Identities=12%  Similarity=-0.045  Sum_probs=66.9

Q ss_pred             HHHHHHHHHHHHHHHHHh----------hhhHHHHHHHHHHHHHHhhhhhhHHHHHHHhhCCCchhhHHHHHHhhhhhhH
Q 017754          207 AMAVAQVVMAFALLYYAI----------GWPGEIYVTTVLVGLSYGAHWAIVPAAASELFGLKSFGALYNFLTLASPAGS  276 (366)
Q Consensus       207 ~~~~~~~~~~~~~~l~~~----------~~~~~l~~~~~l~G~~~g~~~~~~~~~~se~f~~~~~g~~~g~~~~~~~~G~  276 (366)
                      .+.++.++++++++++..          .+...+.+..++.|++.+...+...+++.|.+|++.+|+++|+.++...+|+
T Consensus       375 ~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~  454 (524)
T 2xut_A          375 KMGAGIAITGLSWIVVGTIQLMMDGGSALSIFWQILPYALLTFGEVLVSATGLEFAYSQAPKAMKGTIMSFWTLSVTVGN  454 (524)
T ss_dssp             HHHTHHHHHHHHHHTTTTTTTTTTTTCCCCSHHHHHHHHHHHHHHHHHHHHHTTTHHHHCCTTCCTTTHHHHGGGHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhcCCCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcHHHHhHHHHHHHHHHHHHH
Confidence            345566666666665543          1234566677888999888888888899999999999999999999999999


Q ss_pred             HhhhhHHHHHHHhhh
Q 017754          277 LIFSGVIASGIYDYY  291 (366)
Q Consensus       277 ~i~gp~l~G~l~d~~  291 (366)
                      .+ ||.+.|.+.|..
T Consensus       455 ~~-g~~~~g~~~~~~  468 (524)
T 2xut_A          455 LW-VLLANVSVKSPT  468 (524)
T ss_dssp             HH-HHHHHHHTTSCH
T ss_pred             HH-HHHHHHHhcccc
Confidence            96 999999998754

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	366
d1pw4a_	447	Glycerol-3-phosphate transporter {Escherichia coli	99.67
d1pw4a_	447	Glycerol-3-phosphate transporter {Escherichia coli	99.52
d1pv7a_	417	Lactose permease {Escherichia coli [TaxId: 562]}	99.47
d1pv7a_	417	Lactose permease {Escherichia coli [TaxId: 562]}	99.17

>d1pw4a_ f.38.1.1 (A:) Glycerol-3-phosphate transporter {Escherichia coli [TaxId: 562]}

class: Membrane and cell surface proteins and peptides
fold: MFS general substrate transporter
superfamily: MFS general substrate transporter
family: Glycerol-3-phosphate transporter
domain: Glycerol-3-phosphate transporter
species: Escherichia coli [TaxId: 562]

Probab=99.67  E-value=1.3e-15  Score=145.49  Aligned_cols=197  Identities=16%  Similarity=0.149  Sum_probs=146.4

Q ss_pred             HHHHhhhhhHHHHHHHHHHhhhhHHHHHhcHHHHHHH-hCCChhHH--HHHHHHHHHhhhhhhhhhhhhhhhhhccCchh
Q 017754          129 LPQALMKADFLLLFFSLVLASGSGLTVIDNLGQICQS-LGYADTSI--YVSMISIWNFLGRVGGGYFSEAIVRKFAYPRP  205 (366)
Q Consensus       129 ~~~~l~~~~~~ll~~~~~~~~~~~~~~~~~l~~i~~~-~g~s~~~~--~vsl~~i~~~~g~~~~G~lsD~~grr~~~~R~  205 (366)
                      .+..++++.+|.+....++.......+..++|.+.++ .+++....  ..++..+...++++++|+++||++|++..   
T Consensus       242 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~---  318 (447)
T d1pw4a_         242 MQYVLPNKLLWYIAIANVFVYLLRYGILDWSPTYLKEVKHFALDKSSWAYFLYEYAGIPGTLLCGWMSDKVFRGNRG---  318 (447)
T ss_dssp             HHHTSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHBTTBSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSTTCHH---
T ss_pred             HHHHHcCchHHHHHHHhhhhhhhhhcchhhhhhhcccccccccchhhhhhhcchhhhhhhhhhhhhhhhhccccccc---
Confidence            4556788889988888887777777788888888765 57776655  78888899999999999999999886533   


Q ss_pred             HHHHHHHHHHHHHHHHHH---hhhhHHHHHHHHHHHHHHhhhhhhHHHHHHHhhCCCchhhHHHHHHhhhhhhHHhhhhH
Q 017754          206 VAMAVAQVVMAFALLYYA---IGWPGEIYVTTVLVGLSYGAHWAIVPAAASELFGLKSFGALYNFLTLASPAGSLIFSGV  282 (366)
Q Consensus       206 ~~~~~~~~~~~~~~~l~~---~~~~~~l~~~~~l~G~~~g~~~~~~~~~~se~f~~~~~g~~~g~~~~~~~~G~~i~gp~  282 (366)
                      ........+..++.+++.   ..+.....++.++.|++.++..+.....+.|.+|.+.+|++.|+.+....+++.+.+|.
T Consensus       319 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~~g~~~~~~  398 (447)
T d1pw4a_         319 ATGVFFMTLVTIATIVYWMNPAGNPTVDMICMIVIGFLIYGPVMLIGLHALELAPKKAAGTAAGFTGLFGYLGGSVAASA  398 (447)
T ss_dssp             HHHHHHHHHHHHHHHHTTSCCTTCHHHHHHHHHHHHHHHTHHHHHHHHHHHHTSCTTHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             cccchhHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            122222222222222222   22344556667778888888888888999999999999999999988888765545899


Q ss_pred             HHHHHHhhhhhhhhhhhhhccCCCCCcccCCCCCCcccCCcchHHHHHHHHHHHHHHHHHHHHHhhhchHHHHHHhhc
Q 017754          283 IASGIYDYYAEKQAGLLWKYNGNMLPVSFRDQETPTCLGSICYSITCGIMAGLCIIAMVMSLIVVHRTKSVYAQLYGN  360 (366)
Q Consensus       283 l~G~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~g~~~~~~~f~i~~~~~~~~~~~~~~~~~~~r~~~~~~~~~  360 (366)
                      +.|++.|..+                                |+..|++++++++++.++...+..+.+++.++..++
T Consensus       399 ~~g~~~~~~g--------------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~e  444 (447)
T d1pw4a_         399 IVGYTVDFFG--------------------------------WDGGFMVMIGGSILAVILLIVVMIGEKRRHEQLLQE  444 (447)
T ss_dssp             HHHHHHHSSC--------------------------------SHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHGGGGG
T ss_pred             HHHHHHHHhC--------------------------------hHHHHHHHHHHHHHHHHHHHHHHHhccccHHHHHHh
Confidence            9999999887                                899999988888888877777766666655555544

>d1pw4a_ f.38.1.1 (A:) Glycerol-3-phosphate transporter {Escherichia coli [TaxId: 562]}

class: Membrane and cell surface proteins and peptides
fold: MFS general substrate transporter
superfamily: MFS general substrate transporter
family: Glycerol-3-phosphate transporter
domain: Glycerol-3-phosphate transporter
species: Escherichia coli [TaxId: 562]

Probab=99.52  E-value=3.9e-14  Score=134.91  Aligned_cols=155  Identities=14%  Similarity=0.144  Sum_probs=124.6

Q ss_pred             HHhcHHHHHHHhCCChhHH--HHHHHHHHHhhhhhhhhhhhhhhhhhccCchhHHHHHHHHHHHHHHHHHHh-----hhh
Q 017754          155 VIDNLGQICQSLGYADTSI--YVSMISIWNFLGRVGGGYFSEAIVRKFAYPRPVAMAVAQVVMAFALLYYAI-----GWP  227 (366)
Q Consensus       155 ~~~~l~~i~~~~g~s~~~~--~vsl~~i~~~~g~~~~G~lsD~~grr~~~~R~~~~~~~~~~~~~~~~l~~~-----~~~  227 (366)
                      +....|. .+++|++.++.  ..+.+.++..++.+++|+++||+|||+.+      .++.++.+++.++.+.     .+.
T Consensus        44 ~~~~~p~-~~~~g~s~~~~g~~~s~~~~~~~~~~~~~G~l~Dr~g~r~~~------~~~~~~~~~~~~~~~~~~~~~~~~  116 (447)
T d1pw4a_          44 FALAMPY-LVEQGFSRGDLGFALSGISIAYGFSKFIMGSVSDRSNPRVFL------PAGLILAAAVMLFMGFVPWATSSI  116 (447)
T ss_dssp             HHHHHHH-TTSSTTCSSCHHHHHHHHHHHHHHHHHHHHHHHHHSCHHHHH------HHHHHHHHHHHHHHHHCHHHHSSS
T ss_pred             HHHHHHH-HHHhCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCchHHH------HHHHHHHHHHHhhccccchhhhhH
Confidence            3334454 45689888776  78999999999999999999999998766      6666666666666542     234


Q ss_pred             HHHHHHHHHHHHHHhhhhhhHHHHHHHhhCCCchhhHHHHHHhhhhhhHHhhhhHHHHHHHhhhhhhhhhhhhhccCCCC
Q 017754          228 GEIYVTTVLVGLSYGAHWAIVPAAASELFGLKSFGALYNFLTLASPAGSLIFSGVIASGIYDYYAEKQAGLLWKYNGNML  307 (366)
Q Consensus       228 ~~l~~~~~l~G~~~g~~~~~~~~~~se~f~~~~~g~~~g~~~~~~~~G~~i~gp~l~G~l~d~~~~~~~~~~~~~~~~~~  307 (366)
                      ..+++.+++.|++.|..++...++++|.+++++|+.+.++.+....+|..+ +|.+++.+.+..+               
T Consensus       117 ~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~i-~~~~~~~~~~~~~---------------  180 (447)
T d1pw4a_         117 AVMFVLLFLCGWFQGMGWPPCGRTMVHWWSQKERGGIVSVWNCAHNVGGGI-PPLLFLLGMAWFN---------------  180 (447)
T ss_dssp             SHHHHHHHHHHHHHHHTHHHHHHHHHTTCTTTHHHHHHHHHHHHHHHHHTS-HHHHHHHHHHHTC---------------
T ss_pred             HHHHHHHHHHHHhhhhhhhHHHHHHHHHHHhhcccccccccccccchhhhh-hhhhhhhHhhhhh---------------
Confidence            567888999999999989999999999999999999999999999999996 8998888877654               


Q ss_pred             CcccCCCCCCcccCCcchHHHHHHHHHHHHHHHHHHHHHhh
Q 017754          308 PVSFRDQETPTCLGSICYSITCGIMAGLCIIAMVMSLIVVH  348 (366)
Q Consensus       308 ~~~~~~~~~~~c~g~~~~~~~f~i~~~~~~~~~~~~~~~~~  348 (366)
                                      .|++.|++.+.++++..++.+.+.+
T Consensus       181 ----------------~w~~~~~~~~~~~~~~~~~~~~~~~  205 (447)
T d1pw4a_         181 ----------------DWHAALYMPAFCAILVALFAFAMMR  205 (447)
T ss_dssp             ----------------CSTTCTHHHHHHHHHHHHHHHHHCC
T ss_pred             ----------------cccccchhhhhhHHHHHHHHHHhcc
Confidence                            3899998888877776666655543

>d1pv7a_ f.38.1.2 (A:) Lactose permease {Escherichia coli [TaxId: 562]}

class: Membrane and cell surface proteins and peptides
fold: MFS general substrate transporter
superfamily: MFS general substrate transporter
family: LacY-like proton/sugar symporter
domain: Lactose permease
species: Escherichia coli [TaxId: 562]

Probab=99.47  E-value=1.5e-12  Score=120.82  Aligned_cols=140  Identities=11%  Similarity=0.049  Sum_probs=115.0

Q ss_pred             HHHHHHHHHhhhhhhhhhhhhhhhhhccCchhHHHHHHHHHHHHHHHHHH-hhhhHHHHHHHHHHHHHHhhhhhhHHHHH
Q 017754          174 YVSMISIWNFLGRVGGGYFSEAIVRKFAYPRPVAMAVAQVVMAFALLYYA-IGWPGEIYVTTVLVGLSYGAHWAIVPAAA  252 (366)
Q Consensus       174 ~vsl~~i~~~~g~~~~G~lsD~~grr~~~~R~~~~~~~~~~~~~~~~l~~-~~~~~~l~~~~~l~G~~~g~~~~~~~~~~  252 (366)
                      ..+...++..++..+.|++.||+++|+..      .++.++++++.+++. ..+...+++..++.|++.+..++...+++
T Consensus       264 ~~~~~~~~~~~~~~~~~~l~~r~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~  337 (417)
T d1pv7a_         264 VTTMGELLNASIMFFAPLIINRIGGKNAL------LLAGTIMSVRIIGSSFATSALEVVILKTLHMFEVPFLLVGCFKYI  337 (417)
T ss_dssp             HHHHHHHHHHHHHTTHHHHHHHHCHHHHH------HHHHHHHHHHHHHHHTCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             cccccccccccchhhhhhhhcccccccch------hhhHHHHHHhhhccccccccchhhHHHHHHHHHHHHHHHHHHHHH
Confidence            56666778888999999999999887654      666677777766666 34556677788889999999999999999


Q ss_pred             HHhhCCCchhhHHHHH-HhhhhhhHHhhhhHHHHHHHhhhhhhhhhhhhhccCCCCCcccCCCCCCcccCCcchHHHHHH
Q 017754          253 SELFGLKSFGALYNFL-TLASPAGSLIFSGVIASGIYDYYAEKQAGLLWKYNGNMLPVSFRDQETPTCLGSICYSITCGI  331 (366)
Q Consensus       253 se~f~~~~~g~~~g~~-~~~~~~G~~i~gp~l~G~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~g~~~~~~~f~i  331 (366)
                      .|.+|++.+|+.+++. ++...+|..+ +|.++|+++|..+                                |+.+|++
T Consensus       338 ~~~~~~~~~~~~~~~~~~~~~~~g~~i-~~~~~G~l~~~~g--------------------------------~~~~~~~  384 (417)
T d1pv7a_         338 TSQFEVRFSATIYLVCFCFFKQLAMIF-MSVLAGNMYESIG--------------------------------FQGAYLV  384 (417)
T ss_dssp             HHHSCGGGHHHHHHHHHTTTHHHHHHH-HHHHHHHHHHHHC--------------------------------HHHHHHH
T ss_pred             HHHCCHhHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHC--------------------------------HHHHHHH
Confidence            9999999999999985 5667789996 9999999999987                                9999999


Q ss_pred             HHHHHHHHHHHHHHHhhhchH
Q 017754          332 MAGLCIIAMVMSLIVVHRTKS  352 (366)
Q Consensus       332 ~~~~~~~~~~~~~~~~~~~r~  352 (366)
                      ++++++++.++.+++.++.++
T Consensus       385 ~~~~~~~~~~~~~~~l~~~~~  405 (417)
T d1pv7a_         385 LGLVALGFTLISVFTLSGPGP  405 (417)
T ss_dssp             HHHHHHHHHHHHHHHSCCSSC
T ss_pred             HHHHHHHHHHHHHHhhcCCCc
Confidence            999888888877777665543

>d1pv7a_ f.38.1.2 (A:) Lactose permease {Escherichia coli [TaxId: 562]}

class: Membrane and cell surface proteins and peptides
fold: MFS general substrate transporter
superfamily: MFS general substrate transporter
family: LacY-like proton/sugar symporter
domain: Lactose permease
species: Escherichia coli [TaxId: 562]

Probab=99.17  E-value=1.1e-10  Score=107.91  Aligned_cols=154  Identities=10%  Similarity=0.031  Sum_probs=98.0

Q ss_pred             HHhhhhhHHHHHHHHHHhhhhHHHHHhcHHHHHH-HhCCChhHH--HHHHHHHHHhhhhhhhhhhhhhhhhhccCchhHH
Q 017754          131 QALMKADFLLLFFSLVLASGSGLTVIDNLGQICQ-SLGYADTSI--YVSMISIWNFLGRVGGGYFSEAIVRKFAYPRPVA  207 (366)
Q Consensus       131 ~~l~~~~~~ll~~~~~~~~~~~~~~~~~l~~i~~-~~g~s~~~~--~vsl~~i~~~~g~~~~G~lsD~~grr~~~~R~~~  207 (366)
                      ..+||+++|.+.+.+++.......+...+|.+.+ ++|.+..+.  ..++..++..++.+++|+++||+|||+..     
T Consensus         2 ~~lkn~~~~~l~~~~f~~~~~~~~~~~~l~~~l~~~~g~s~~~~g~i~s~~~l~~~i~~~~~G~l~Dr~grr~~l-----   76 (417)
T d1pv7a_           2 YYLKNTNFWMFGLFFFFYFFIMGAYFPFFPIWLHDINHISKSDTGIIFAAISLFSLLFQPLFGLLSDKLGLRKYL-----   76 (417)
T ss_dssp             HHHHSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHTHHHHHHHHHHHTTCTHH-----
T ss_pred             CcccCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCchHHH-----
Confidence            3579999999988887776666666677887654 589998876  88899999999999999999999998765     


Q ss_pred             HHHHHHHHHHHHHHHHh-hhhH----HHHHHHHHHHHHHhhhhhhHHHHHHHhhCC--CchhhHHHHHHhhhhhhHHhhh
Q 017754          208 MAVAQVVMAFALLYYAI-GWPG----EIYVTTVLVGLSYGAHWAIVPAAASELFGL--KSFGALYNFLTLASPAGSLIFS  280 (366)
Q Consensus       208 ~~~~~~~~~~~~~l~~~-~~~~----~l~~~~~l~G~~~g~~~~~~~~~~se~f~~--~~~g~~~g~~~~~~~~G~~i~g  280 (366)
                       ..+..+..++..++.. ....    ..++...+.+.+.+...........+....  +.+....+........+..+ +
T Consensus        77 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~  154 (417)
T d1pv7a_          77 -LWIITGMLVMFAPFFIFIFGPLLQYNILVGSIVGGIYLGFCFNAGAPAVEAFIEKVSRRSNFEFGRARMFGCVGWAL-G  154 (417)
T ss_dssp             -HHHHHHHHHTHHHHHHHTHHHHHHTTCHHHHHHTTTTGGGGGTTHHHHHHHHHHHHHHHHSCCHHHHHHHHHHHHHH-H
T ss_pred             -HHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHhhhcccccccchhhcccccccchhhhhHHHHHHHhhhhcccccc-c
Confidence             4444444444444332 1111    122333333333333333333222222222  23444556666677777775 8


Q ss_pred             hHHHHHHHhhh
Q 017754          281 GVIASGIYDYY  291 (366)
Q Consensus       281 p~l~G~l~d~~  291 (366)
                      |.+++.+.+..
T Consensus       155 ~~~~~~l~~~~  165 (417)
T d1pv7a_         155 ASIVGIMFTIN  165 (417)
T ss_dssp             HHHHHHHHHHC
T ss_pred             ccccccccccc
Confidence            88888887654