Citrus Sinensis ID: 017767

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360------
MRGFIFLSALLCFTCHHIAFSITDGLLPNGNFELGPRPSDMNGTVVLGRYAIPSWEISGFVEYIRSGQKQGDMLLVVPEGAFAVRLGNEASVKQRIKVIKGNYYSISFNFARTCAQEESLNISVAPEWGVLPLQTLYSSNGWDTYAWAFQAKFNYAEIVLHNPGVEEDPACGPLIDSIAIRGLYPPRASNKNILKNGGFEEGPYVFPNTSWGVLIPPNIEDDHSPLPGWMIESLKAVKYIDSDHFSVPQGKRAIELVAGKESAIAQIARTIPGKTYTLTFTVGDANNACAGSMVVEAFAGKGTIKVPYESKGKGGFKRAVLRFVAVSNRTRIMFLSTFYTMRSDDFSSLCGPVIDDVKLLSVRSKA
ccHHHHHHHHHHHHHHccccccccccccccccccccccccccccEEEccccccccEEEEEEEEEEcccccccEEEEcccccEEEEcccccEEEEEEEEEcccEEEEEEEEccccccccEEEEEEcccccEEEEEEEEcccccEEEEEEEEEEEcEEEEEEEccccccccccccHHHHEEHHcccccccccccccccccccccccccccccccEEcccccccccccccccEEEEccEEEEEcccccccccccEEEEEEcccccEEEEEEEcccccEEEEEEEEcccccccccEEEEEEEEcccEEEEEEEEcccccEEEEEEEEEEccccEEEEEEEccccccccccccccccEEEEEEEEEEcccc
ccHHHHHHHHHHHHHHHHHHHHHccccccccccccccccccccEEEcccccccccEEEEEEEEEccccccccEEEEEccccEEEEEccccEEEEEEEEccccEEEEEEEEccccccccEEEEEEcccccEEEEEEEEcccccccEEEEEEEEccEEEEEEEcccccccccccccHccEEEEEcccccccccccEEccccccccccccccccEEEcccccccccccccccEEEccccEEEEcccccccccccEEEEEEcccccHEEEEEEEccccEEEEEEEEEcccccccccEEEEEEEccccEEEEEEEcccccEEEEEEEEEEEcccEEEEEEEEEEcccccccccccccEEccEEEEEccccc
MRGFIFLSALLCFTCHHIAFsitdgllpngnfelgprpsdmngtvvlgryaipsweiSGFVEYIRSgqkqgdmllvvpEGAFAVRLGNEASVKQRIKVIKGNYYSISFNFARtcaqeeslnisvapewgvlplqtlyssngwdTYAWAFQAKFNYAeivlhnpgveedpacgplidsiairglypprasnknilknggfeegpyvfpntswgvlippnieddhsplpgwmIESLKAVkyidsdhfsvpqgKRAIELVAGKESAIAQIARtipgktytLTFTvgdannacaGSMVVEAFagkgtikvpyeskgkggfkRAVLRFVAVSNRTRIMFLSTFytmrsddfsslcgpviddvklLSVRSKA
MRGFIFLSALLCFTCHHIAFSITDGLLPNGNFELGPRPSDMNGTVVLGRYAIPSWEISGFVEYIRSGQKQGDMLLVVPEGAFAVRLGNEASVKQRIKVIKGNYYSISFNFARTCAQEESLNISVAPEWGVLPLQTLYSSNGWDTYAWAFQAKFNYAEIVLHNPGVEEDPACGPLIDSIAIRGLYPPRASNKNILKNGGFEEGPYVFPNTSWGVLIPPNIEDDHSPLPGWMIESLKAVKYIDSDHFSVPQGKRAIELVAGKESAIAQIARTIPGKTYTLTFTVGDANNACAGSMVVEAFAGKGTIKVpyeskgkggfkrAVLRFVAVSNRTRIMFLSTFYTMRSDDFsslcgpviddvkllsvrska
MRGFIFLSALLCFTCHHIAFSITDGLLPNGNFELGPRPSDMNGTVVLGRYAIPSWEISGFVEYIRSGQKQGDMLLVVPEGAFAVRLGNEASVKQRIKVIKGNYYSISFNFARTCAQEESLNISVAPEWGVLPLQTLYSSNGWDTYAWAFQAKFNYAEIVLHNPGVEEDPACGPLIDSIAIRGLYPPRASNKNILKNGGFEEGPYVFPNTSWGVLIPPNIEDDHSPLPGWMIESLKAVKYIDSDHFSVPQGKRAIELVAGKESAIAQIARTIPGKTYTLTFTVGDANNACAGSMVVEAFAGKGTIKVPYESKGKGGFKRAVLRFVAVSNRTRIMFLSTFYTMRSDDFSSLCGPVIDDVKLLSVRSKA
**GFIFLSALLCFTCHHIAFSITDGLLPNGNFELGPRPSDMNGTVVLGRYAIPSWEISGFVEYIRSGQKQGDMLLVVPEGAFAVRLGNEASVKQRIKVIKGNYYSISFNFARTCAQEESLNISVAPEWGVLPLQTLYSSNGWDTYAWAFQAKFNYAEIVLHNPGVEEDPACGPLIDSIAIRGLYPPRASNKNILKNGGFEEGPYVFPNTSWGVLIPPNIEDDHSPLPGWMIESLKAVKYIDSDHFSVPQGKRAIELVAGKESAIAQIARTIPGKTYTLTFTVGDANNACAGSMVVEAFAGKGTIKVPYESKGKGGFKRAVLRFVAVSNRTRIMFLSTFYTMRSDDFSSLCGPVIDDVKLL******
***FIFLSALLCFTCHHIAFSITDGLLPNGNFE*************LGRYAIPSWEISGFVEYIRSGQKQGDMLLVVPEGAFAVRLGNEASVKQRIKVIKGNYYSISFNFARTCAQEESLNISVAPEWGVLPLQTLYSSNGWDTYAWAFQAKFNYAEIVLHNPGVEEDPACGPLIDSIAIRGL***************FEEGPYVFPNTSWGVLIPPNIEDDHSPLPGWMIESLKAVKYIDSDHFSVPQGKRAIELVAGKESAIAQIARTIPGKTYTLTFTVGDANNACAGSMVVEAFAGKGTIKVPYESKGKGGFKRAVLRFVAVSNRTRIMFLSTFYTMRSDDFSSLCGPVIDDVKLLSVR***
MRGFIFLSALLCFTCHHIAFSITDGLLPNGNFELGPRPSDMNGTVVLGRYAIPSWEISGFVEYIRSGQKQGDMLLVVPEGAFAVRLGNEASVKQRIKVIKGNYYSISFNFARTCAQEESLNISVAPEWGVLPLQTLYSSNGWDTYAWAFQAKFNYAEIVLHNPGVEEDPACGPLIDSIAIRGLYPPRASNKNILKNGGFEEGPYVFPNTSWGVLIPPNIEDDHSPLPGWMIESLKAVKYIDSDHFSVPQGKRAIELVAGKESAIAQIARTIPGKTYTLTFTVGDANNACAGSMVVEAFAGKGTIKVPYESKGKGGFKRAVLRFVAVSNRTRIMFLSTFYTMRSDDFSSLCGPVIDDVKLLSVRSKA
*RGFIFLSALLCFTCHHIAFSITDGLLPNGNFELGPRPSDMNGTVVLGRYAIPSWEISGFVEYIRSGQKQGDMLLVVPEGAFAVRLGNEASVKQRIKVIKGNYYSISFNFARTCAQEESLNISVAPEWGVLPLQTLYSSNGWDTYAWAFQAKFNYAEIVLHNPGVEEDPACGPLIDSIAIRGLYPPRASNKNILKNGGFEEGPYVFPNTSWGVLIPPNIEDDHSPLPGWMIESLKAVKYIDSDHFSVPQGKRAIELVAGKESAIAQIARTIPGKTYTLTFTVGDANNACAGSMVVEAFAGKGTIKVPYESKGKGGFKRAVLRFVAVSNRTRIMFLSTFYTMRSDDFSSLCGPVIDDVKLLSVRS**
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
iiiiiHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
ooooooooooHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHiiii
SSSSSSSSSSSSSSSSSSSSSooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
SSSSSSSSSSSSSSSSSSSSSSoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
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MRGFIFLSALLCFTCHHIAFSITDGLLPNGNFELGPRPSDMNGTVVLGRYAIPSWEISGFVEYIRSGQKQGDMLLVVPEGAFAVRLGNEASVKQRIKVIKGNYYSISFNFARTCAQEESLNISVAPEWGVLPLQTLYSSNGWDTYAWAFQAKFNYAEIVLHNPGVEEDPACGPLIDSIAIRGLYPPRASNKNILKNGGFEEGPYVFPNTSWGVLIPPNIEDDHSPLPGWMIESLKAVKYIDSDHFSVPQGKRAIELVAGKESAIAQIARTIPGKTYTLTFTVGDANNACAGSMVVEAFAGKGTIKVPYESKGKGGFKRAVLRFVAVSNRTRIMFLSTFYTMRSDDFSSLCGPVIDDVKLLSVRSKA
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

No hits with e-value below 0.001 by BLAST

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query366
225430200368 PREDICTED: uncharacterized protein LOC10 0.991 0.986 0.837 0.0
255549002364 conserved hypothetical protein [Ricinus 0.989 0.994 0.826 0.0
356552527366 PREDICTED: uncharacterized protein LOC10 0.989 0.989 0.791 1e-173
118486160365 unknown [Populus trichocarpa] 0.989 0.991 0.782 1e-173
224089150365 predicted protein [Populus trichocarpa] 0.989 0.991 0.782 1e-173
224141863366 predicted protein [Populus trichocarpa] 0.991 0.991 0.785 1e-173
356563851366 PREDICTED: uncharacterized protein LOC10 0.989 0.989 0.783 1e-172
537313375 unknown protein [Medicago sativa] 0.989 0.965 0.771 1e-170
217071896376 unknown [Medicago truncatula] 0.948 0.922 0.781 1e-167
449441934368 PREDICTED: uncharacterized protein LOC10 0.980 0.975 0.783 1e-166
>gi|225430200|ref|XP_002284962.1| PREDICTED: uncharacterized protein LOC100252479 [Vitis vinifera] Back     alignment and taxonomy information
 Score =  651 bits (1680), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 305/364 (83%), Positives = 337/364 (92%), Gaps = 1/364 (0%)

Query: 1   MRGFIFLSALLCFTCHHIAFSITDGLLPNGNFELGPRPSDMNGTVVLGRYAIPSWEISGF 60
           MR   FL  LLC TCH IA S TDGLLPNGNFELGP+PSDM GT V+G +AIP WE SGF
Sbjct: 1   MRAVAFLLLLLCATCH-IALSFTDGLLPNGNFELGPKPSDMKGTEVIGPHAIPEWETSGF 59

Query: 61  VEYIRSGQKQGDMLLVVPEGAFAVRLGNEASVKQRIKVIKGNYYSISFNFARTCAQEESL 120
           +EYI++GQKQGDMLLVVPEGAFAVRLGNEAS+KQR+KVIKG YYSI+F+ ARTCAQEE L
Sbjct: 60  IEYIKAGQKQGDMLLVVPEGAFAVRLGNEASIKQRVKVIKGMYYSITFSAARTCAQEERL 119

Query: 121 NISVAPEWGVLPLQTLYSSNGWDTYAWAFQAKFNYAEIVLHNPGVEEDPACGPLIDSIAI 180
           NISVAP+WGVLP+QTLYSSNGWD+YAWAFQA ++  EIV+HNPGVEEDPACGPLIDS+A 
Sbjct: 120 NISVAPDWGVLPMQTLYSSNGWDSYAWAFQADYDVIEIVIHNPGVEEDPACGPLIDSVAF 179

Query: 181 RGLYPPRASNKNILKNGGFEEGPYVFPNTSWGVLIPPNIEDDHSPLPGWMIESLKAVKYI 240
           R LYPPR S+KN+LKNGGFEEGPYVFPNTSWGVLIPPNIEDDHSPLPGWM+ESLKAVKYI
Sbjct: 180 RALYPPRPSSKNLLKNGGFEEGPYVFPNTSWGVLIPPNIEDDHSPLPGWMVESLKAVKYI 239

Query: 241 DSDHFSVPQGKRAIELVAGKESAIAQIARTIPGKTYTLTFTVGDANNACAGSMVVEAFAG 300
           DSDHFSVPQ KRA+ELVAGKESAIAQ+ARTIPGKTY L+F+VGDA+N+C GSMVVEAFAG
Sbjct: 240 DSDHFSVPQEKRAVELVAGKESAIAQVARTIPGKTYALSFSVGDASNSCEGSMVVEAFAG 299

Query: 301 KGTIKVPYESKGKGGFKRAVLRFVAVSNRTRIMFLSTFYTMRSDDFSSLCGPVIDDVKLL 360
           + TIKVPYESKGKGGFKRAVLRFVAVSNRTRIMFLSTFYTMRSDD++SLCGPV+DDVKLL
Sbjct: 300 RDTIKVPYESKGKGGFKRAVLRFVAVSNRTRIMFLSTFYTMRSDDYASLCGPVLDDVKLL 359

Query: 361 SVRS 364
           S+R+
Sbjct: 360 SLRT 363

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|255549002|ref|XP_002515557.1| conserved hypothetical protein [Ricinus communis] gi|1621268|emb|CAB02653.1| unknown [Ricinus communis] gi|223545501|gb|EEF47006.1| conserved hypothetical protein [Ricinus communis] Back     alignment and taxonomy information
>gi|356552527|ref|XP_003544618.1| PREDICTED: uncharacterized protein LOC100776765 [Glycine max] Back     alignment and taxonomy information
>gi|118486160|gb|ABK94923.1| unknown [Populus trichocarpa] Back     alignment and taxonomy information
>gi|224089150|ref|XP_002308647.1| predicted protein [Populus trichocarpa] gi|222854623|gb|EEE92170.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|224141863|ref|XP_002324280.1| predicted protein [Populus trichocarpa] gi|222865714|gb|EEF02845.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|356563851|ref|XP_003550171.1| PREDICTED: uncharacterized protein LOC100813910 [Glycine max] Back     alignment and taxonomy information
>gi|537313|gb|AAB41813.1| unknown protein [Medicago sativa] Back     alignment and taxonomy information
>gi|217071896|gb|ACJ84308.1| unknown [Medicago truncatula] Back     alignment and taxonomy information
>gi|449441934|ref|XP_004138737.1| PREDICTED: uncharacterized protein LOC101219952 [Cucumis sativus] gi|449514984|ref|XP_004164530.1| PREDICTED: uncharacterized protein LOC101227825 [Cucumis sativus] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query366
TAIR|locus:2144206366 AT5G11420 "AT5G11420" [Arabido 0.975 0.975 0.759 6e-151
TAIR|locus:2127831365 AT4G32460 "AT4G32460" [Arabido 0.980 0.983 0.759 7.6e-151
TAIR|locus:2145457369 DGR2 "AT5G25460" [Arabidopsis 0.991 0.983 0.741 2.3e-149
TAIR|locus:2016324370 DGR1 "AT1G80240" [Arabidopsis 0.969 0.959 0.659 3.7e-126
TAIR|locus:2077467365 AT3G08030 "AT3G08030" [Arabido 0.964 0.967 0.555 6.2e-101
TAIR|locus:2054351370 AT2G41810 "AT2G41810" [Arabido 0.918 0.908 0.553 3.9e-99
TAIR|locus:2054336370 AT2G41800 "AT2G41800" [Arabido 0.980 0.970 0.516 1.5e-97
TAIR|locus:2062321401 AT2G34510 "AT2G34510" [Arabido 0.923 0.842 0.489 4.1e-88
TAIR|locus:2198279407 AT1G29980 [Arabidopsis thalian 0.942 0.847 0.483 8.6e-88
TAIR|locus:2174713383 AT5G14150 "AT5G14150" [Arabido 0.860 0.822 0.332 2.7e-36
TAIR|locus:2144206 AT5G11420 "AT5G11420" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 1473 (523.6 bits), Expect = 6.0e-151, P = 6.0e-151
 Identities = 272/358 (75%), Positives = 313/358 (87%)

Query:     6 FLSALLCFTCHHIAFSITDGLLPNGNFELGPRPSDMNGTVVLGRYAIPSWEISGFVEYIR 65
             FL  LL  T   +    +DG+LPNG+FELGP+PSDM GT V+ + AIPSWE+SGFVEYI+
Sbjct:     8 FLFVLLIATITSV-ICFSDGMLPNGDFELGPKPSDMKGTQVINKKAIPSWELSGFVEYIK 66

Query:    66 SGQKQGDMLLVVPEGAFAVRLGNEASVKQRIKVIKGNYYSISFNFARTCAQEESLNISVA 125
             SGQKQGDMLLVVP G FA+RLGNEAS+KQR+ V KG YYS++F+ ARTCAQ+E LNISVA
Sbjct:    67 SGQKQGDMLLVVPAGKFAIRLGNEASIKQRLNVTKGMYYSLTFSAARTCAQDERLNISVA 126

Query:   126 PEWGVLPLQTLYSSNGWDTYAWAFQAKFNYAEIVLHNPGVEEDPACGPLIDSIAIRGLYP 185
             P+ GV+P+QT+YSS+GWD YAWAFQA+ N AEIV+HNPG EEDPACGPLID +AI+ LYP
Sbjct:   127 PDSGVIPIQTVYSSSGWDLYAWAFQAESNVAEIVIHNPGEEEDPACGPLIDGVAIKALYP 186

Query:   186 PRASNKNILKNGGFEEGPYVFPNTSWGVLIPPNIEDDHSPLPGWMIESLKAVKYIDSDHF 245
             PR +NKNILKNGGFEEGPYV PN + GVL+PP IEDDHSPLP WM+ESLKA+KY+D +HF
Sbjct:   187 PRPTNKNILKNGGFEEGPYVLPNATTGVLVPPFIEDDHSPLPAWMVESLKAIKYVDVEHF 246

Query:   246 SVPQGKRAIELVAGKESAIAQIARTIPGKTYTLTFTVGDANNACAGSMVVEAFAGKGTIK 305
             SVPQG+RA+ELVAGKESAIAQ+ART+ GKTY L+F VGDANNAC GSMVVEAFAGK T+K
Sbjct:   247 SVPQGRRAVELVAGKESAIAQVARTVVGKTYVLSFAVGDANNACQGSMVVEAFAGKDTLK 306

Query:   306 VPYESKGKGGFKRAVLRFVAVSNRTRIMFLSTFYTMRSDDFSSLCGPVIDDVKLLSVR 363
             VPYES+GKGGFKRA LRFVAVS RTR+MF STFY+MRSDDFSSLCGPVIDDVKLLS R
Sbjct:   307 VPYESRGKGGFKRASLRFVAVSTRTRVMFYSTFYSMRSDDFSSLCGPVIDDVKLLSAR 364
GO:0003674 "molecular_function" evidence=ND
GO:0005576 "extracellular region" evidence=ISM
GO:0008150 "biological_process" evidence=ND
GO:0005618 "cell wall" evidence=IDA
GO:0009505 "plant-type cell wall" evidence=IDA
TAIR|locus:2127831 AT4G32460 "AT4G32460" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2145457 DGR2 "AT5G25460" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2016324 DGR1 "AT1G80240" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2077467 AT3G08030 "AT3G08030" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2054351 AT2G41810 "AT2G41810" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2054336 AT2G41800 "AT2G41800" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2062321 AT2G34510 "AT2G34510" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2198279 AT1G29980 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2174713 AT5G14150 "AT5G14150" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Your Input:
GSVIVG00032599001
SubName- Full=Chromosome chr4 scaffold_6, whole genome shotgun sequence; (368 aa)
(Vitis vinifera)
Predicted Functional Partners:
 
Sorry, there are no predicted associations at the current settings.
 

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query366
PLN03089373 PLN03089, PLN03089, hypothetical protein; Provisio 0.0
pfam04862323 pfam04862, DUF642, Protein of unknown function, DU 0.0
TIGR04362157 TIGR04362, choice_anch_C, choice-of-anchor C domai 2e-09
pfam04862323 pfam04862, DUF642, Protein of unknown function, DU 0.003
TIGR04362157 TIGR04362, choice_anch_C, choice-of-anchor C domai 0.004
>gnl|CDD|215569 PLN03089, PLN03089, hypothetical protein; Provisional Back     alignment and domain information 
 Score =  701 bits (1812), Expect = 0.0
 Identities = 264/366 (72%), Positives = 308/366 (84%), Gaps = 1/366 (0%)

Query: 1   MRGFIFLSALLCFTCHHIAFSITDGLLPNGNFELGPRPSDMNGTVVLGRYAIPSWEISGF 60
               + L  LLC      A  +TDGLLPNG+FE  P+ S MNGTVV+G+ AIP WEISGF
Sbjct: 5   HSLLLLLLLLLCAAAA-SAAPVTDGLLPNGDFETPPKKSQMNGTVVIGKNAIPGWEISGF 63

Query: 61  VEYIRSGQKQGDMLLVVPEGAFAVRLGNEASVKQRIKVIKGNYYSISFNFARTCAQEESL 120
           VEYI SGQKQG MLLVVPEGA AVRLGNEAS+ Q + V KG+YYS++F+ ARTCAQ+ESL
Sbjct: 64  VEYISSGQKQGGMLLVVPEGAHAVRLGNEASISQTLTVTKGSYYSLTFSAARTCAQDESL 123

Query: 121 NISVAPEWGVLPLQTLYSSNGWDTYAWAFQAKFNYAEIVLHNPGVEEDPACGPLIDSIAI 180
           N+SV PE GVLPLQTLYSS+GWD+YAWAF+A+ +   +V HNPGVEEDPACGPLID++AI
Sbjct: 124 NVSVPPESGVLPLQTLYSSSGWDSYAWAFKAESDVVNLVFHNPGVEEDPACGPLIDAVAI 183

Query: 181 RGLYPPRASNKNILKNGGFEEGPYVFPNTSWGVLIPPNIEDDHSPLPGWMIESLKAVKYI 240
           + L+PPR +  N+LKNGGFEEGPYVFPN+SWGVL+PPNIEDD SPLPGWMIESLKAVKYI
Sbjct: 184 KTLFPPRPTKDNLLKNGGFEEGPYVFPNSSWGVLLPPNIEDDTSPLPGWMIESLKAVKYI 243

Query: 241 DSDHFSVPQGKRAIELVAGKESAIAQIARTIPGKTYTLTFTVGDANNACAGSMVVEAFAG 300
           DS HFSVP+GKRA+ELV+GKESAIAQ+ RT+PGK+Y L+FTVGDANN C GSM+VEAFAG
Sbjct: 244 DSAHFSVPEGKRAVELVSGKESAIAQVVRTVPGKSYNLSFTVGDANNGCHGSMMVEAFAG 303

Query: 301 KGTIKVPYESKGKGGFKRAVLRFVAVSNRTRIMFLSTFYTMRSDDFSSLCGPVIDDVKLL 360
           K T KVPYES+GKGGFKRA LRF AVSNRTRI F S+FY  +SDDF SLCGPV+DDV+++
Sbjct: 304 KDTQKVPYESQGKGGFKRASLRFKAVSNRTRITFYSSFYHTKSDDFGSLCGPVVDDVRVV 363

Query: 361 SVRSKA 366
            VR+  
Sbjct: 364 PVRAPR 369

Length = 373
>gnl|CDD|191115 pfam04862, DUF642, Protein of unknown function, DUF642 Back     alignment and domain information
>gnl|CDD|234562 TIGR04362, choice_anch_C, choice-of-anchor C domain Back     alignment and domain information
>gnl|CDD|191115 pfam04862, DUF642, Protein of unknown function, DUF642 Back     alignment and domain information
>gnl|CDD|234562 TIGR04362, choice_anch_C, choice-of-anchor C domain Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 366
PLN03089373 hypothetical protein; Provisional 100.0
PF04862159 DUF642: Protein of unknown function (DUF642); Inte 100.0
PLN03089 373 hypothetical protein; Provisional 100.0
PF04862159 DUF642: Protein of unknown function (DUF642); Inte 100.0
PF02018131 CBM_4_9: Carbohydrate binding domain; InterPro: IP 98.81
PF02018131 CBM_4_9: Carbohydrate binding domain; InterPro: IP 98.63
cd06263157 MAM Meprin, A5 protein, and protein tyrosine phosp 92.35
smart00137161 MAM Domain in meprin, A5, receptor protein tyrosin 85.47
PF03422125 CBM_6: Carbohydrate binding module (family 6); Int 84.2
PF00629160 MAM: MAM domain; InterPro: IPR000998 MAM is an acr 84.01
PF03422125 CBM_6: Carbohydrate binding module (family 6); Int 81.5
>PLN03089 hypothetical protein; Provisional Back     alignment and domain information 
Probab=100.00  E-value=2.8e-120  Score=899.43  Aligned_cols=362  Identities=73%  Similarity=1.227  Sum_probs=349.8

Q ss_pred             eeeeeeehhhccceeeecccCcccCCCCCCCCCCCCCCceEEeCCCCCCCcEEeeeEEEEeCCCccCceEEecCCCceEE
Q 017767            5 IFLSALLCFTCHHIAFSITDGLLPNGNFELGPRPSDMNGTVVLGRYAIPSWEISGFVEYIRSGQKQGDMLLVVPEGAFAV   84 (366)
Q Consensus         5 ~~~~~~~~~~~~~~~~~~~~~ll~NG~FE~~P~~~~~~~t~~~g~~~ip~W~~~G~Veyi~sg~~~g~m~~~vpeG~~av   84 (366)
                      .+++|||+++++++++++.||||+|||||++|.+.++++++..+.++||+|+++|+||||+++||||||+|+||+|+|||
T Consensus         8 ~~~~~~~~~~~~~~~~~~~~nLL~NG~FE~gP~~~~~n~t~~~g~s~LPgW~i~g~VeyI~s~~~~~~m~~~vP~G~~Av   87 (373)
T PLN03089          8 LLLLLLLLCAAAASAAPVTDGLLPNGDFETPPKKSQMNGTVVIGKNAIPGWEISGFVEYISSGQKQGGMLLVVPEGAHAV   87 (373)
T ss_pred             HHHHHHHHHhcccccccccCCeecCCCccCCCCcCCCCcccccCCCCCCCCEecCcEEEEeCCCccCceeEECCCCchhh
Confidence            34555555566666677899999999999999999899999999999999999999999999999999999999999999


Q ss_pred             EcCCCceeEEEEEecCCcEEEEEEEecccccccceEEEEECCccceeeeeeeecccceeEEEEEEEEecceEEEEEECCC
Q 017767           85 RLGNEASVKQRIKVIKGNYYSISFNFARTCAQEESLNISVAPEWGVLPLQTLYSSNGWDTYAWAFQAKFNYAEIVLHNPG  164 (366)
Q Consensus        85 ~Lg~~~~I~Q~~~t~~G~~Y~lTFsaa~tca~~~~l~vsv~~~~~~~~~qt~y~~~gw~~~~~~F~A~~~~t~l~f~s~~  164 (366)
                      |||+|++|+|+|+|++|++|+|||+++|+|+|+|.|+|+|++++++||+|++|+++||++|+|+|+|+++.++|+|||++
T Consensus        88 ~LG~e~sI~Q~i~t~~G~~Y~LTFs~ar~c~~~~~v~vsv~~~~~~~~~qt~~~~~gw~~~s~~F~A~s~~t~l~F~~~~  167 (373)
T PLN03089         88 RLGNEASISQTLTVTKGSYYSLTFSAARTCAQDESLNVSVPPESGVLPLQTLYSSSGWDSYAWAFKAESDVVNLVFHNPG  167 (373)
T ss_pred             hcCCCceEEEEEEccCCCEEEEEEEecCCCCCCceEEEEecCCCcEEeeEEeccCCCcEEEEEEEEEecccEEEEEECcc
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCCCCCCcceeeEEEeeccCCccCccccccCCCCCCCCCCCCCCCceeecCCCccCCCCCCCCcEEeecceEEEEeCCC
Q 017767          165 VEEDPACGPLIDSIAIRGLYPPRASNKNILKNGGFEEGPYVFPNTSWGVLIPPNIEDDHSPLPGWMIESLKAVKYIDSDH  244 (366)
Q Consensus       165 ~~~~~~cGP~iD~V~v~~l~~p~~~~~NLl~NG~FE~gP~~~~n~~~gvl~p~~~~~~~s~ipgW~i~g~~~VeyI~s~~  244 (366)
                      +++|++|||+||+|+||+|++|+++++|||+||+||+||++++|++||||+||++++++|+||||+|+++|+|||||+.|
T Consensus       168 ~~~D~~CGPviD~VaIk~l~~P~p~~~Nll~NG~FE~Gp~~~~n~~~gvllp~~~~~~~s~LpgW~i~s~~~V~yids~h  247 (373)
T PLN03089        168 VEEDPACGPLIDAVAIKTLFPPRPTKDNLLKNGGFEEGPYVFPNSSWGVLLPPNIEDDTSPLPGWMIESLKAVKYIDSAH  247 (373)
T ss_pred             cCCCCcccceeeeEEEeeccCCCccccceeecCCcccCCcccCCCCceEEeCCccccCCCCCCCcEEecCccEEEEecCc
Confidence            99999999999999999999999999999999999999999999999999999999999999999999889999999999


Q ss_pred             CcCCCCCeEEEecCCCcceEEEEEEccCCCEEEEEEEeccCCCcCCcceEEEEEcCcceEEEEeeecCCcceEEEEEEEE
Q 017767          245 FSVPQGKRAIELVAGKESAIAQIARTIPGKTYTLTFTVGDANNACAGSMVVEAFAGKGTIKVPYESKGKGGFKRAVLRFV  324 (366)
Q Consensus       245 ~~vP~G~~aVeL~~G~e~~I~Q~v~t~~G~~Y~LtFslgdA~~~c~~~~~v~v~~g~~~~~~~y~s~G~~~w~~~s~~F~  324 (366)
                      |.||+|+|||||++|+|++|+|+|+|++|+.|+|+|+||||+|.|+|+|.|++++|..+++++|+++|+++|++++|.|+
T Consensus       248 ~~vp~G~~aveL~~g~e~aI~Q~v~T~~G~~Y~LsFs~g~a~~~c~gs~~V~a~ag~~~~~v~~~s~g~gg~~~~s~~F~  327 (373)
T PLN03089        248 FSVPEGKRAVELVSGKESAIAQVVRTVPGKSYNLSFTVGDANNGCHGSMMVEAFAGKDTQKVPYESQGKGGFKRASLRFK  327 (373)
T ss_pred             ccCCCCceEEEeccCCcceEEEEEEccCCCEEEEEEEEccCCCCCCCcEEEEEEeecccceEEEecCCCcceEEEEEEEE
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             EeeceEEEEEEecccccccCCCCCcccceeeeEEEEEecCCC
Q 017767          325 AVSNRTRIMFLSTFYTMRSDDFSSLCGPVIDDVKLLSVRSKA  366 (366)
Q Consensus       325 A~~~~t~l~F~s~~~~~~~d~~~~~cGPvlD~V~v~~v~~~~  366 (366)
                      |++++|||+|+|.+||||+||.+++|||+||||+|++++.|+
T Consensus       328 A~s~~Trl~F~s~~y~~~~d~~~~~cGPvlDdV~v~~~~~~~  369 (373)
T PLN03089        328 AVSNRTRITFYSSFYHTKSDDFGSLCGPVVDDVRVVPVRAPR  369 (373)
T ss_pred             eccCCEEEEEEEeecccccCcCCCcccceeeeEEEEEccCCc
Confidence            999999999999999999999899999999999999998763

>PF04862 DUF642: Protein of unknown function (DUF642); InterPro: IPR006946 This family contains a conserved region found in a number of uncharacterised plant proteins Back     alignment and domain information
>PLN03089 hypothetical protein; Provisional Back     alignment and domain information
>PF04862 DUF642: Protein of unknown function (DUF642); InterPro: IPR006946 This family contains a conserved region found in a number of uncharacterised plant proteins Back     alignment and domain information
>PF02018 CBM_4_9: Carbohydrate binding domain; InterPro: IPR003305 The 1,4-beta-glucanase CenC from Cellulomonas fimi contains two cellulose-binding domains, CBD(N1) and CBD(N2), arranged in tandem at its N terminus Back     alignment and domain information
>PF02018 CBM_4_9: Carbohydrate binding domain; InterPro: IPR003305 The 1,4-beta-glucanase CenC from Cellulomonas fimi contains two cellulose-binding domains, CBD(N1) and CBD(N2), arranged in tandem at its N terminus Back     alignment and domain information
>cd06263 MAM Meprin, A5 protein, and protein tyrosine phosphatase Mu (MAM) domain Back     alignment and domain information
>smart00137 MAM Domain in meprin, A5, receptor protein tyrosine phosphatase mu (and others) Back     alignment and domain information
>PF03422 CBM_6: Carbohydrate binding module (family 6); InterPro: IPR005084 A carbohydrate-binding module (CBM) is defined as a contiguous amino acid sequence within a carbohydrate-active enzyme with a discreet fold having carbohydrate-binding activity Back     alignment and domain information
>PF00629 MAM: MAM domain; InterPro: IPR000998 MAM is an acronym derived from meprin, A-5 protein, and receptor protein-tyrosine phosphatase mu Back     alignment and domain information
>PF03422 CBM_6: Carbohydrate binding module (family 6); InterPro: IPR005084 A carbohydrate-binding module (CBM) is defined as a contiguous amino acid sequence within a carbohydrate-active enzyme with a discreet fold having carbohydrate-binding activity Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query366
2zex_A147 S-layer associated multidomain endoglucanase; fami 2e-05
2xom_A152 Arabinogalactan endo-1,4-beta-galactosidase; hydro 7e-04
>2zex_A S-layer associated multidomain endoglucanase; family 16 CBM-1 cellopentaose complex, glycosidase, hydrolase; HET: BGC; 1.20A {Thermoanaerobacteriumpolysaccharolyticum} PDB: 2zew_A 2zey_A* 3oea_A* 3oeb_A* Length = 147 Back     alignment and structure
 Score = 43.2 bits (101), Expect = 2e-05
 Identities = 28/179 (15%), Positives = 47/179 (26%), Gaps = 37/179 (20%)

Query: 188 ASNKNILKNGGFEEGPYVFPNTSWGVLIPPNIEDDHSPLPGWMIESLKAVKYIDSDHFSV 247
           A   N++ N GFE+G   +    W   +    E  H+                       
Sbjct: 2   AHMVNMVSNPGFEDGLDSW--QDWQQDMSAVPEAAHN----------------------- 36

Query: 248 PQGKRAIELVAGKESAIAQIARTIPGKTYTLTF---TVGDANNACAGSMVVEAFAGKGTI 304
             G   +++  GK +   Q     P  TY L                 +         T 
Sbjct: 37  --GALGLKIGGGKAAGGGQDIPLKPNTTYILGAWAKFDSKPAGTFDVVVQYHLKDANNTY 94

Query: 305 KVPYESKGKGGFKRAVLRFVAVSNRTRIMFLSTFYTMRSDDFSSLCGPV-IDDVKLLSV 362
                +  +  +    L F           L+ +    S         + +DDV L+ V
Sbjct: 95  VQHILNFNETDWTYKQLLFTTPDVFGSTPQLALWKGDTSK------ANLYVDDVYLVEV 147
>2xom_A Arabinogalactan endo-1,4-beta-galactosidase; hydrolase, carbohydrate-binding module, glycoside hydrolase, beta-sandwich.; HET: GAL; 0.95A {Thermotoga maritima} PDB: 2xon_A* Length = 152 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query366
2zex_A147 S-layer associated multidomain endoglucanase; fami 99.22
2xom_A152 Arabinogalactan endo-1,4-beta-galactosidase; hydro 99.07
2zex_A147 S-layer associated multidomain endoglucanase; fami 99.07
2zez_A144 Family 16 CBM-2, S-layer associated multidomain en 98.93
1gu3_A149 Endoglucanase C; carbohydrate-binding module, carb 98.85
1gui_A155 Laminarinase 16A; carbohydrate binding module, CBM 98.71
2zez_A144 Family 16 CBM-2, S-layer associated multidomain en 98.67
1cx1_A153 Endoglucanase C; cellulose-binding domain, cellool 98.66
1gu3_A149 Endoglucanase C; carbohydrate-binding module, carb 98.57
1gui_A155 Laminarinase 16A; carbohydrate binding module, CBM 98.55
3p6b_A205 Cellulose 1,4-beta-cellobiosidase; beta-sandwich, 98.51
2xom_A152 Arabinogalactan endo-1,4-beta-galactosidase; hydro 98.51
1dyo_A160 Endo-1,4-beta-xylanase Y; carbohydrate-binding mod 98.5
1cx1_A153 Endoglucanase C; cellulose-binding domain, cellool 98.47
3p6b_A205 Cellulose 1,4-beta-cellobiosidase; beta-sandwich, 98.46
3k4z_A289 Glycoside hydrolase family 9; cellulase, CBHA, CBM 98.43
3k4z_A 289 Glycoside hydrolase family 9; cellulase, CBHA, CBM 98.3
2zxq_A 1376 Endo-alpha-N-acetylgalactosaminidase; broken TIM b 98.24
3ecq_A 1531 Protein SPR0328, endo-alpha-N-acetylgalactosaminid 98.22
1dyo_A160 Endo-1,4-beta-xylanase Y; carbohydrate-binding mod 97.72
2w5f_A 540 Endo-1,4-beta-xylanase Y; cellulosome, glycosidase 97.23
2w5f_A 540 Endo-1,4-beta-xylanase Y; cellulosome, glycosidase 97.0
2y6h_A167 Xylanase, CBM4-2; hydrolase; 1.08A {Rhodothermus m 96.66
2w3j_A145 Carbohydrate binding module; sugar-binding protein 96.09
2w47_A144 Lipolytic enzyme, G-D-S-L; hydrolase; HET: UNF; 1. 96.06
2wz8_A156 Cellulosome protein dockerin type I; sugar binding 95.53
2w3j_A145 Carbohydrate binding module; sugar-binding protein 95.37
2w47_A144 Lipolytic enzyme, G-D-S-L; hydrolase; HET: UNF; 1. 95.36
2w87_A139 Esterase D, XYL-CBM35; plant cell WALL degradation 95.16
3ecq_A 1531 Protein SPR0328, endo-alpha-N-acetylgalactosaminid 95.15
2vzp_A127 Aocbm35, EXO-beta-D-glucosaminidase; family 35, CS 94.91
2zxq_A 1376 Endo-alpha-N-acetylgalactosaminidase; broken TIM b 94.25
2w87_A139 Esterase D, XYL-CBM35; plant cell WALL degradation 94.17
2wz8_A156 Cellulosome protein dockerin type I; sugar binding 94.06
2y6h_A167 Xylanase, CBM4-2; hydrolase; 1.08A {Rhodothermus m 93.38
2vzp_A127 Aocbm35, EXO-beta-D-glucosaminidase; family 35, CS 93.22
2cdp_A160 Beta-agarase 1; carbohydrate-binding module, hydro 83.23
>2zex_A S-layer associated multidomain endoglucanase; family 16 CBM-1 cellopentaose complex, glycosidase, hydrolase; HET: BGC; 1.20A {Thermoanaerobacteriumpolysaccharolyticum} PDB: 2zew_A 2zey_A* 3oea_A* 3oeb_A* Back     alignment and structure
Probab=99.22  E-value=1.8e-10  Score=99.21  Aligned_cols=140  Identities=21%  Similarity=0.219  Sum_probs=85.2

Q ss_pred             CccccccCCCCCCCCCCCCCCCceeecCCCccCCCCCCCCcEEeecceEEEEeCCCCcCCCCCeEEEecCCCcceEEEEE
Q 017767          189 SNKNILKNGGFEEGPYVFPNTSWGVLIPPNIEDDHSPLPGWMIESLKAVKYIDSDHFSVPQGKRAIELVAGKESAIAQIA  268 (366)
Q Consensus       189 ~~~NLl~NG~FE~gP~~~~n~~~gvl~p~~~~~~~s~ipgW~i~g~~~VeyI~s~~~~vP~G~~aVeL~~G~e~~I~Q~v  268 (366)
                      +..|||.||+||+|                       +.+|+..+..... +..   .+-.|.++++|.+...+.+.|.|
T Consensus         3 ~~~Nli~N~~FE~g-----------------------~~~W~~~~~~~~~-~~~---~~~~G~~~l~~~~~~~~~~~Q~v   55 (147)
T 2zex_A            3 HMVNMVSNPGFEDG-----------------------LDSWQDWQQDMSA-VPE---AAHNGALGLKIGGGKAAGGGQDI   55 (147)
T ss_dssp             CCEECCSSTTSTTT-----------------------TTTCEETTSCEEE-EGG---GCSSSSCEEEECSSSCEEEEEEC
T ss_pred             cccceecCCCcccC-----------------------ccCCcCcCCceeE-Eec---cccCCceEEEEcCCCCccEeEEE
Confidence            45799999999985                       2478876521122 332   24579999998544557999999


Q ss_pred             EccCCCEEEEEEEeccCCCcCCcceEEEEEc----Ccce-EEEEeeecCCcceEEEEEEEEEeeceEEEEEEeccccccc
Q 017767          269 RTIPGKTYTLTFTVGDANNACAGSMVVEAFA----GKGT-IKVPYESKGKGGFKRAVLRFVAVSNRTRIMFLSTFYTMRS  343 (366)
Q Consensus       269 ~t~~G~~Y~LtFslgdA~~~c~~~~~v~v~~----g~~~-~~~~y~s~G~~~w~~~s~~F~A~~~~t~l~F~s~~~~~~~  343 (366)
                      .+.||+.|+|+|++--. ....+...+.+..    +... ...... .....|++.++.|++.+..+.+.++ ..+.   
T Consensus        56 ~v~~~~~Y~ls~wvk~~-~~g~~~~~~~v~~~~~~~~~~~~~~~~~-~~~~~W~~~s~~ftt~~~~~~~~~~-~~~~---  129 (147)
T 2zex_A           56 PLKPNTTYILGAWAKFD-SKPAGTFDVVVQYHLKDANNTYVQHILN-FNETDWTYKQLLFTTPDVFGSTPQL-ALWK---  129 (147)
T ss_dssp             CCCTTCEEEEEEEEEES-SCCSSCEEEEEEEEBSSTTCCEEEEEEE-ECCSSCEEEEEEEECCSSBSSCCEE-EEEE---
T ss_pred             EECCCCEEEEEEEEEec-cCCCceEEEEEEEeeCCCCCcEEEeEee-eCCCCcEEEEEEEEcCCCCceEEEE-EEEe---
Confidence            99999999999998421 1122233333321    1111 111111 1335799999999977666543333 1111   


Q ss_pred             CCCCCcccceeeeEEEEEe
Q 017767          344 DDFSSLCGPVIDDVKLLSV  362 (366)
Q Consensus       344 d~~~~~cGPvlD~V~v~~v  362 (366)
                       +.+...--+||||+|++|
T Consensus       130 -~~~~~~~~~iDDv~l~~v  147 (147)
T 2zex_A          130 -GDTSKANLYVDDVYLVEV  147 (147)
T ss_dssp             -CCCSSCCEEEEEEEEEEC
T ss_pred             -cCCCcceEEEEeEEEEEC
Confidence             011124478999999875
>2xom_A Arabinogalactan endo-1,4-beta-galactosidase; hydrolase, carbohydrate-binding module, glycoside hydrolase, beta-sandwich.; HET: GAL; 0.95A {Thermotoga maritima} PDB: 2xon_A* Back     alignment and structure
>2zex_A S-layer associated multidomain endoglucanase; family 16 CBM-1 cellopentaose complex, glycosidase, hydrolase; HET: BGC; 1.20A {Thermoanaerobacteriumpolysaccharolyticum} PDB: 2zew_A 2zey_A* 3oea_A* 3oeb_A* Back     alignment and structure
>2zez_A Family 16 CBM-2, S-layer associated multidomain endoglucanase; family 16 carbohydrate binding module-2; 1.90A {Thermoanaerobacterium polysaccharolytiorganism_taxid} Back     alignment and structure
>1gu3_A Endoglucanase C; carbohydrate-binding module, carbohydrate binding module, CBM, cellulose; HET: BGC; 2.3A {Cellulomonas fimi} SCOP: b.18.1.14 PDB: 1ulo_A 1ulp_A Back     alignment and structure
>1gui_A Laminarinase 16A; carbohydrate binding module, CBM, glucan, cellulose; HET: BGC; 1.9A {Thermotoga maritima} SCOP: b.18.1.14 Back     alignment and structure
>2zez_A Family 16 CBM-2, S-layer associated multidomain endoglucanase; family 16 carbohydrate binding module-2; 1.90A {Thermoanaerobacterium polysaccharolytiorganism_taxid} Back     alignment and structure
>1cx1_A Endoglucanase C; cellulose-binding domain, cellooligosacharides, cellulase, protein- carbohydrate interaction, hydrolase; NMR {Cellulomonas fimi} SCOP: b.18.1.14 Back     alignment and structure
>1gu3_A Endoglucanase C; carbohydrate-binding module, carbohydrate binding module, CBM, cellulose; HET: BGC; 2.3A {Cellulomonas fimi} SCOP: b.18.1.14 PDB: 1ulo_A 1ulp_A Back     alignment and structure
>1gui_A Laminarinase 16A; carbohydrate binding module, CBM, glucan, cellulose; HET: BGC; 1.9A {Thermotoga maritima} SCOP: b.18.1.14 Back     alignment and structure
>3p6b_A Cellulose 1,4-beta-cellobiosidase; beta-sandwich, carbohydrate binding, sugar binding protein; 2.00A {Clostridium thermocellum} Back     alignment and structure
>2xom_A Arabinogalactan endo-1,4-beta-galactosidase; hydrolase, carbohydrate-binding module, glycoside hydrolase, beta-sandwich.; HET: GAL; 0.95A {Thermotoga maritima} PDB: 2xon_A* Back     alignment and structure
>1dyo_A Endo-1,4-beta-xylanase Y; carbohydrate-binding module, xylan-binding; 2.1A {Clostridium thermocellum} SCOP: b.18.1.7 PDB: 1h6y_A 1h6x_A Back     alignment and structure
>1cx1_A Endoglucanase C; cellulose-binding domain, cellooligosacharides, cellulase, protein- carbohydrate interaction, hydrolase; NMR {Cellulomonas fimi} SCOP: b.18.1.14 Back     alignment and structure
>3p6b_A Cellulose 1,4-beta-cellobiosidase; beta-sandwich, carbohydrate binding, sugar binding protein; 2.00A {Clostridium thermocellum} Back     alignment and structure
>3k4z_A Glycoside hydrolase family 9; cellulase, CBHA, CBM4, IG-like, cellulosome, CBM, sugar binding protein; HET: CBI XGP; 2.11A {Clostridium thermocellum dsm 4150} Back     alignment and structure
>3k4z_A Glycoside hydrolase family 9; cellulase, CBHA, CBM4, IG-like, cellulosome, CBM, sugar binding protein; HET: CBI XGP; 2.11A {Clostridium thermocellum dsm 4150} Back     alignment and structure
>2zxq_A Endo-alpha-N-acetylgalactosaminidase; broken TIM barrel, glycosidase, hydrolase; 2.00A {Bifidobacterium longum} Back     alignment and structure
>3ecq_A Protein SPR0328, endo-alpha-N-acetylgalactosaminidase; distorted (beta/alpha)8 (TIM) barrel glycoside hydrolase DOM WALL; 2.90A {Streptococcus pneumoniae} Back     alignment and structure
>1dyo_A Endo-1,4-beta-xylanase Y; carbohydrate-binding module, xylan-binding; 2.1A {Clostridium thermocellum} SCOP: b.18.1.7 PDB: 1h6y_A 1h6x_A Back     alignment and structure
>2w5f_A Endo-1,4-beta-xylanase Y; cellulosome, glycosidase, xylan degradation, hydrolase; HET: XYP; 1.90A {Clostridium thermocellum} PDB: 2wze_A* 2wys_A* Back     alignment and structure
>2w5f_A Endo-1,4-beta-xylanase Y; cellulosome, glycosidase, xylan degradation, hydrolase; HET: XYP; 1.90A {Clostridium thermocellum} PDB: 2wze_A* 2wys_A* Back     alignment and structure
>2y6h_A Xylanase, CBM4-2; hydrolase; 1.08A {Rhodothermus marinus} PDB: 2y64_A* 2y6g_A 2y6l_A* 2y6j_A* 2y6k_A* 3jxs_A 1k42_A 1k45_A Back     alignment and structure
>2w3j_A Carbohydrate binding module; sugar-binding protein, family 35, uronic acid sugars; 1.70A {Uncultured bacterium} Back     alignment and structure
>2w47_A Lipolytic enzyme, G-D-S-L; hydrolase; HET: UNF; 1.40A {Clostridium thermocellum} PDB: 2w1w_A Back     alignment and structure
>2wz8_A Cellulosome protein dockerin type I; sugar binding protein; 1.50A {Clostridium thermocellum} Back     alignment and structure
>2w3j_A Carbohydrate binding module; sugar-binding protein, family 35, uronic acid sugars; 1.70A {Uncultured bacterium} Back     alignment and structure
>2w47_A Lipolytic enzyme, G-D-S-L; hydrolase; HET: UNF; 1.40A {Clostridium thermocellum} PDB: 2w1w_A Back     alignment and structure
>2w87_A Esterase D, XYL-CBM35; plant cell WALL degradation, carbohydrate protein binding, xylan, CMB35, glucuronic acid, hydrolase; HET: GCU; 1.60A {Cellvibrio japonicus} PDB: 2w46_A Back     alignment and structure
>3ecq_A Protein SPR0328, endo-alpha-N-acetylgalactosaminidase; distorted (beta/alpha)8 (TIM) barrel glycoside hydrolase DOM WALL; 2.90A {Streptococcus pneumoniae} Back     alignment and structure
>2vzp_A Aocbm35, EXO-beta-D-glucosaminidase; family 35, CSXA, glucuronic acid, hydrolase; 1.05A {Amycolatopsis orientalis} PDB: 2vzq_A* 2vzr_A* Back     alignment and structure
>2zxq_A Endo-alpha-N-acetylgalactosaminidase; broken TIM barrel, glycosidase, hydrolase; 2.00A {Bifidobacterium longum} Back     alignment and structure
>2w87_A Esterase D, XYL-CBM35; plant cell WALL degradation, carbohydrate protein binding, xylan, CMB35, glucuronic acid, hydrolase; HET: GCU; 1.60A {Cellvibrio japonicus} PDB: 2w46_A Back     alignment and structure
>2wz8_A Cellulosome protein dockerin type I; sugar binding protein; 1.50A {Clostridium thermocellum} Back     alignment and structure
>2y6h_A Xylanase, CBM4-2; hydrolase; 1.08A {Rhodothermus marinus} PDB: 2y64_A* 2y6g_A 2y6l_A* 2y6j_A* 2y6k_A* 3jxs_A 1k42_A 1k45_A Back     alignment and structure
>2vzp_A Aocbm35, EXO-beta-D-glucosaminidase; family 35, CSXA, glucuronic acid, hydrolase; 1.05A {Amycolatopsis orientalis} PDB: 2vzq_A* 2vzr_A* Back     alignment and structure
>2cdp_A Beta-agarase 1; carbohydrate-binding module, hydrolase; HET: GAL AAL; 1.59A {Saccharophagus degradans} PDB: 2cdo_A* Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query366
d1cx1a_153 Cellulose-binding domain of cellulase C {Cellulomo 99.07
d1guia_155 Carbohydrate binding module from laminarinase 16A 99.05
d1guia_155 Carbohydrate binding module from laminarinase 16A 99.04
d1cx1a_153 Cellulose-binding domain of cellulase C {Cellulomo 99.0
d1h6ya_157 Xylan-binding domain {Clostridium thermocellum [Ta 98.66
d1h6ya_157 Xylan-binding domain {Clostridium thermocellum [Ta 98.28
d1gu3a_142 Cellulose-binding domain of cellulase C {Cellulomo 98.2
d1gu3a_142 Cellulose-binding domain of cellulase C {Cellulomo 97.77
d1k42a_168 Carbohydrate binding module from a thermostable xy 96.03
d1k42a_168 Carbohydrate binding module from a thermostable xy 92.7
>d1cx1a_ b.18.1.14 (A:) Cellulose-binding domain of cellulase C {Cellulomonas fimi [TaxId: 1708]} Back     information, alignment and structure
class: All beta proteins
fold: Galactose-binding domain-like
superfamily: Galactose-binding domain-like
family: CBM4/9
domain: Cellulose-binding domain of cellulase C
species: Cellulomonas fimi [TaxId: 1708]

Probab=99.07  E-value=3.8e-10  Score=94.43  Aligned_cols=129  Identities=18%  Similarity=0.205  Sum_probs=80.9

Q ss_pred             CccccccCCCCCCCCCCCCCCCceeecCCCccCCCCCCCCcEEeecceEEEEeCCCCcCCCCCeEEEecCCCc----ceE
Q 017767          189 SNKNILKNGGFEEGPYVFPNTSWGVLIPPNIEDDHSPLPGWMIESLKAVKYIDSDHFSVPQGKRAIELVAGKE----SAI  264 (366)
Q Consensus       189 ~~~NLl~NG~FE~gP~~~~n~~~gvl~p~~~~~~~s~ipgW~i~g~~~VeyI~s~~~~vP~G~~aVeL~~G~e----~~I  264 (366)
                      +..|||+||+||+|                       +.+|.+.+...        ..+-+|..-+++.++..    ..+
T Consensus         5 ~~~~li~Ng~F~~g-----------------------~~~W~~~g~~~--------~~~~~G~~~~~v~~~~~~~w~~~~   53 (153)
T d1cx1a_           5 SEVELLPHTSFAES-----------------------LGPWSLYGTSE--------PVFADGRMCVDLPGGQGNPWDAGL   53 (153)
T ss_dssp             SCCCSSSCCCTTTC-----------------------CTTCEEESSSC--------CEECSSCEEEECCSCCSCSTTSEE
T ss_pred             CCccEEcCCCccCC-----------------------CCCcEeCcCCc--------cEEeCCcEEEEccCCCCCccceEE
Confidence            35699999999986                       25898875322        23336777777755432    456


Q ss_pred             EEE-EEccCCCEEEEEEEeccCCCcCCcceEEEEEcCcceE-----EEEeeecCCcceEEEEEEEEEee-------ceEE
Q 017767          265 AQI-ARTIPGKTYTLTFTVGDANNACAGSMVVEAFAGKGTI-----KVPYESKGKGGFKRAVLRFVAVS-------NRTR  331 (366)
Q Consensus       265 ~Q~-v~t~~G~~Y~LtFslgdA~~~c~~~~~v~v~~g~~~~-----~~~y~s~G~~~w~~~s~~F~A~~-------~~t~  331 (366)
                      .|. +.+++|+.|+|+|.+-  +. -...+.|.+.......     ...+..  ...|++++++|++..       ...+
T Consensus        54 ~~~~v~l~~G~~Y~lsf~ak--a~-~~~~~~v~v~~~~~~~~~~~~~~~~~~--~~~~~~~~~tfT~~~~~~~~~~~~~~  128 (153)
T d1cx1a_          54 VYNGVPVGEGESYVLSFTAS--AT-PDMPVRVLVGEGGGAYRTAFEQGSAPL--TGEPATREYAFTSNLTFPPDGDAPGQ  128 (153)
T ss_dssp             EECCCCBCTTSEEEEEEEEE--ES-SCEEEEEEEECSSSSCCCSSCEEEEEE--CSCCEEEEEEEECCSCBCSSSSCCCE
T ss_pred             EecceEEcCCCEEEEEEEEE--EC-CCceEEEEEeccCCCceeecceeEEEe--cCCceEEEEEEEecccccCCCCcceE
Confidence            665 8899999999999972  11 1234566665432221     111221  246999999998653       3468


Q ss_pred             EEEEecccccccCCCCCcccceeeeEEEEE
Q 017767          332 IMFLSTFYTMRSDDFSSLCGPVIDDVKLLS  361 (366)
Q Consensus       332 l~F~s~~~~~~~d~~~~~cGPvlD~V~v~~  361 (366)
                      |.|.--..      .+  .==.||||+|..
T Consensus       129 l~f~~g~~------~~--~~~~iDdVsLt~  150 (153)
T d1cx1a_         129 VAFHLGKA------GA--YEFCISQVSLTT  150 (153)
T ss_dssp             EEEECCCT------TC--CEEEEEEEEEEC
T ss_pred             EEEEeCCC------CC--cEEEEEEEEEEe
Confidence            98865421      01  112399999975
>d1guia_ b.18.1.14 (A:) Carbohydrate binding module from laminarinase 16A {Thermotoga maritima [TaxId: 2336]} Back     information, alignment and structure
>d1guia_ b.18.1.14 (A:) Carbohydrate binding module from laminarinase 16A {Thermotoga maritima [TaxId: 2336]} Back     information, alignment and structure
>d1cx1a_ b.18.1.14 (A:) Cellulose-binding domain of cellulase C {Cellulomonas fimi [TaxId: 1708]} Back     information, alignment and structure
>d1h6ya_ b.18.1.7 (A:) Xylan-binding domain {Clostridium thermocellum [TaxId: 1515]} Back     information, alignment and structure
>d1h6ya_ b.18.1.7 (A:) Xylan-binding domain {Clostridium thermocellum [TaxId: 1515]} Back     information, alignment and structure
>d1gu3a_ b.18.1.14 (A:) Cellulose-binding domain of cellulase C {Cellulomonas fimi [TaxId: 1708]} Back     information, alignment and structure
>d1gu3a_ b.18.1.14 (A:) Cellulose-binding domain of cellulase C {Cellulomonas fimi [TaxId: 1708]} Back     information, alignment and structure
>d1k42a_ b.18.1.14 (A:) Carbohydrate binding module from a thermostable xylanase {Rhodothermus marinus [TaxId: 29549]} Back     information, alignment and structure
>d1k42a_ b.18.1.14 (A:) Carbohydrate binding module from a thermostable xylanase {Rhodothermus marinus [TaxId: 29549]} Back     information, alignment and structure