Citrus Sinensis ID: 017770

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360------
MALLLSSSFVSSTQLPFSTFNTDKWNTGRVNKNSYCFTMCSVSNSSSSKPKRVWIWTESKQVMTAAVERGWNTFVFLSENQQLAIDWSTIALLDPLFIKEGEVYDSGDRRVGSIIEVSTPQELQQLQPADGQAENIVIDLPDWQVIPAENIVASFQGSGKTVFAISKTPSEAQIFLEALEQGLGGIVLKVEDVKAVLALKEYFDGRNEVSNLLSLMKATVTRVDVAGMGDRVCVDLCSLMRPGEGLLVGSFARGLFLVHSECLESNYIASRPFRVNAGPVHAYVLVPGGKTCYLSELKSGKEVIVVDQKGRQRTAVVGRVKIESRPLILVEAKALALAGHSEPSLFLWFLVCTSSSLIPSSIAVNG
cccccccccccccccccccccccccccccccccccEEEEccccccccccccEEEEEEccHHHHHHHHHccccEEEEccccHHHHHccccEEEEEccccccccEEcccccEEEEEEEEccHHHHHHHHHHccccccEEEEccccccccHHHHHHcccccccEEEEEcccHHHHHHHHHHHHccccEEEEccccHHHHHHHHHHHcccccccccEEEEEEEEEEEEEcccccEEEEEcccccccccEEEEEccccEEEEEEEcccccccccccccEEEccccEEEEEEcccccccEEccccccEEEEEcccccEEEEEEEEEEEccccEEEEEEEEcccccccEEEEEEEcccEEEEEEccccccccc
cHHHHHcccccccccccccccccccccccccccccEEEEccccccccccccEEEEEcccHHHHHHHHHccccEEEEcHHHHHHHHHHcccEEEcccEccccccccccccEEEEEEccccHHHHHHHHHHHccccEEEEEEccccEccHHHHHHHHcccccEEEEEEccHHHHHHHHHHHHccccEEEEccccHHHHHHHHHHHHHHcccccccEEEEEEEEEEEEcccccEEEEEccHccccccEEEEEccccEEEEEEcccccccccccccEEEccccEEEEEEccccccEEHHHcccccEEEEEEccccEEEEEEEEEEEEEccEEEEEEEEccccccccEEEEEEEEEEcccccccccccccc
MALLLSSsfvsstqlpfstfntdkwntgrvnknsYCFTMCsvsnsssskpkrvWIWTESKQVMTAAVERGWNTFVFLSENqqlaidwstialldplfikegevydsgdrrvgsiievstpqelqqlqpadgqaenividlpdwqvipaenivasfqgsgktvfaISKTPSEAQIFLEALEQGLGGIVLKVEDVKAVLALKEYFDGRNEVSNLLSLMKATVTRVDVAGMGDRVCVDLcslmrpgegllvGSFARGLFLVHseclesnyiasrpfrvnagpvhayvlvpggktcylselksgkevivvdqkgrqrtavvGRVKIESRPLILVEAKALAlaghsepsLFLWFLVCtssslipssiavng
malllsssfvsstqlpfstfntdkwntgrvNKNSYCFTMCSvsnsssskpkrvWIWTESKQVMTAAVERGWNTFVFLSENQQLAIDWSTIALLDPLFIKEGEVYDSGDRRVGSIIEVSTPQELQQLQPADGQAENIVIDLPDWQVIPAENIVASFQGSGKTVFAISKTPSEAQIFLEALEQGLGGIVLKVEDVKAVLALKEYFDGRNEVSNLLSLMKATVTRVDVAGMGDRVCVDLCSLMRPGEGLLVGSFARGLFLVHSECLESNYIASRPFRVNAGPVHAYVLVPGGKTCYLSELKSgkevivvdqkgrqrtavvgrvkiesrpLILVEAKALALAGHSEPSLFLWFLVCTSSslipssiavng
MALLLSSSFVSSTQLPFSTFNTDKWNTGRVNKNSYCFTMCsvsnssssKPKRVWIWTESKQVMTAAVERGWNTFVFLSENQQLAIDWSTIALLDPLFIKEGEVYDSGDRRVGSIIEVSTPQELQQLQPADGQAENIVIDLPDWQVIPAENIVASFQGSGKTVFAISKTPSEAQIFLEALEQGLGGIVLKVEDVKAVLALKEYFDGRNEVSNLLSLMKATVTRVDVAGMGDRVCVDLCSLMRPGEGLLVGSFARGLFLVHSECLESNYIASRPFRVNAGPVHAYVLVPGGKTCYLSELKSGKEVIVVDQKGRQRTAVVGRVKIESRPLILVEAKALALAGHSEPSLFLWFLVCTSSSLIPSSIAVNG
**************LPFSTFNTDKWNTGRVNKNSYCFTMC************VWIWTESKQVMTAAVERGWNTFVFLSENQQLAIDWSTIALLDPLFIKEGEVYDSGDRRVGSIIEV***************AENIVIDLPDWQVIPAENIVASFQGSGKTVFAISKTPSEAQIFLEALEQGLGGIVLKVEDVKAVLALKEYFDGRNEVSNLLSLMKATVTRVDVAGMGDRVCVDLCSLMRPGEGLLVGSFARGLFLVHSECLESNYIASRPFRVNAGPVHAYVLVPGGKTCYLSELKSGKEVIVVDQKGRQRTAVVGRVKIESRPLILVEAKALALAGHSEPSLFLWFLVCTSSSLI********
**************LPF*************************************IWTESKQVMTAAVERGWNTFVFLSENQQLAIDWSTIALLDPLFIKEGEVYDSGDRRVGSIIEVSTPQELQQLQPADGQAENIVIDLPDWQVIPAENIVASFQGSGKTVFAISKTPSEAQIFLEALEQGLGGIVLKVEDVKAVLALKE************SLMKATVTRVDVAGMGDRVCVDLCSLMRPGEGLLVGSFARGLFLVHSECLESNYIASRPFRVNAGPVHAYVLVPGGKTCYLSELKSGKEVIVVDQKGRQRTAVVGRVKIESRPLILVEAKALALAGHSEPSLFLWFLVCTSS***********
MALLLSSSFVSSTQLPFSTFNTDKWNTGRVNKNSYCFTMCSV*********RVWIWTESKQVMTAAVERGWNTFVFLSENQQLAIDWSTIALLDPLFIKEGEVYDSGDRRVGSIIEVSTPQELQQLQPADGQAENIVIDLPDWQVIPAENIVASFQGSGKTVFAISKTPSEAQIFLEALEQGLGGIVLKVEDVKAVLALKEYFDGRNEVSNLLSLMKATVTRVDVAGMGDRVCVDLCSLMRPGEGLLVGSFARGLFLVHSECLESNYIASRPFRVNAGPVHAYVLVPGGKTCYLSELKSGKEVIVVDQKGRQRTAVVGRVKIESRPLILVEAKALALAGHSEPSLFLWFLVCTSSSLIPSSIAVNG
******SSFVSSTQLPFSTFNTDKWNTGRVNKNSYCFTMCSVSNSSSSKPKRVWIWTESKQVMTAAVERGWNTFVFLSENQQLAIDWSTIALLDPLFIKEGEVYDSGDRRVGSIIEVSTPQELQQLQPADGQAENIVIDLPDWQVIPAENIVASFQGSGKTVFAISKTPSEAQIFLEALEQGLGGIVLKVEDVKAVLALKEYFDGRNEVSNLLSLMKATVTRVDVAGMGDRVCVDLCSLMRPGEGLLVGSFARGLFLVHSECLESNYIASRPFRVNAGPVHAYVLVPGGKTCYLSELKSGKEVIVVDQKGRQRTAVVGRVKIESRPLILVEAKALALAGHSEPSLFLWFLVCTSSSLIPS******
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
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SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
SSSSSSSSSSSSSSSSSSSSSooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
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MALLLSSSFVSSTQLPFSTFNTDKWNTGRVNKNSYCFTMCSVSNSSSSKPKRVWIWTESKQVMTAAVERGWNTFVFLSENQQLAIDWSTIALLDPLFIKEGEVYDSGDRRVGSIIEVSTPQELQQLQPADGQAENIVIDLPDWQVIPAENIVASFQGSGKTVFAISKTPSEAQIFLEALEQGLGGIVLKVEDVKAVLALKEYFDGRNEVSNLLSLMKATVTRVDVAGMGDRVCVDLCSLMRPGEGLLVGSFARGLFLVHSECLESNYIASRPFRVNAGPVHAYVLVPGGKTCYLSELKSGKEVIVVDQKGRQRTAVVGRVKIESRPLILVEAKALALAGHSEPSLFLWFLVCTSSSLIPSSIAVNG
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query366 2.2.26 [Sep-21-2011]
O26680374 3-dehydroquinate synthase yes no 0.740 0.724 0.409 1e-56
Q2NI00359 3-dehydroquinate synthase yes no 0.767 0.782 0.382 2e-54
Q58646361 3-dehydroquinate synthase yes no 0.540 0.548 0.495 3e-53
A4G0J1361 3-dehydroquinate synthase yes no 0.535 0.542 0.489 4e-52
A5UJ82368 3-dehydroquinate synthase yes no 0.726 0.722 0.384 2e-51
A9A8T5361 3-dehydroquinate synthase yes no 0.535 0.542 0.484 3e-51
A0B6K6362 3-dehydroquinate synthase yes no 0.743 0.751 0.400 4e-51
A6VHZ4361 3-dehydroquinate synthase yes no 0.535 0.542 0.474 1e-50
Q6M1B0361 3-dehydroquinate synthase yes no 0.535 0.542 0.479 1e-50
Q12UJ7379 3-dehydroquinate synthase yes no 0.508 0.490 0.538 2e-50
>sp|O26680|DHQS_METTH 3-dehydroquinate synthase OS=Methanothermobacter thermautotrophicus (strain ATCC 29096 / DSM 1053 / JCM 10044 / NBRC 100330 / Delta H) GN=MTH_580 PE=3 SV=2 Back     alignment and function desciption
 Score =  220 bits (561), Expect = 1e-56,   Method: Compositional matrix adjust.
 Identities = 127/310 (40%), Positives = 184/310 (59%), Gaps = 39/310 (12%)

Query: 56  WTESKQVMTAAVERGWNTFVFLSENQQLAIDWSTIALLDP-------LFIKEGE------ 102
           W E K  +TAA+E G +  V  +++ ++      + L+ P       L  ++GE      
Sbjct: 13  WDEKKTFITAALESGIDHIVDTADSGRIK-KLGNLTLISPDEDADIVLVGRDGEGDGTLE 71

Query: 103 ----------------VYDSGDRRVGSIIEVSTPQELQQLQPADGQAENIVIDLPDWQVI 146
                           + +SG R+V + +E+ +    +  +      + +++   DW++I
Sbjct: 72  LPETLEYSRDIEMASELSESG-RQVAAYVEIRSKAHEELARRLGRVVDYLILVGEDWKII 130

Query: 147 PAENIVASFQGSGKTVFAISKTPSEAQIFLEALEQGLGGIVLKVEDV---KAVLALKEYF 203
           P ENI+A  Q     + A      EA++ LE LE G  G++++  D+   K + AL E  
Sbjct: 131 PLENIIADLQEEDVKLIAAVADVDEARVALETLEHGTDGVLIEPADISQIKDIAALLENI 190

Query: 204 DGRNEVSNLLSLMKATVTRVDVAGMGDRVCVDLCSLMRPGEGLLVGSFARGLFLVHSECL 263
           +     S    L  AT+TR++  G GDRVCVD CS+M  GEG+LVGS+++GLFLVHSE L
Sbjct: 191 E-----SETYELKPATITRIEPIGSGDRVCVDTCSIMGIGEGMLVGSYSQGLFLVHSESL 245

Query: 264 ESNYIASRPFRVNAGPVHAYVLVPGGKTCYLSELKSGKEVIVVDQKGRQRTAVVGRVKIE 323
           ES Y+ASRPFRVNAGPV AYV+VPGG+T YLSEL++G EVI+VD+ GR R+A+VGRVKIE
Sbjct: 246 ESEYVASRPFRVNAGPVQAYVMVPGGRTRYLSELETGDEVIIVDRDGRSRSAIVGRVKIE 305

Query: 324 SRPLILVEAK 333
            RPL+LVEA+
Sbjct: 306 KRPLMLVEAE 315
Catalyzes the oxidative deamination and cyclization of 2-amino-3,7-dideoxy-D-threo-hept-6-ulosonic acid (ADH) to yield 3-dehydroquinate (DHQ), which is fed into the canonical shikimic pathway of aromatic amino acid biosynthesis.
Methanothermobacter thermautotrophicus (strain ATCC 29096 / DSM 1053 / JCM 10044 / NBRC 100330 / Delta H) (taxid: 187420)
EC: 1EC: .EC: -EC: .EC: -EC: .EC: -
>sp|Q2NI00|DHQS_METST 3-dehydroquinate synthase OS=Methanosphaera stadtmanae (strain DSM 3091) GN=Msp_0090 PE=3 SV=1 Back     alignment and function description
>sp|Q58646|DHQS_METJA 3-dehydroquinate synthase OS=Methanocaldococcus jannaschii (strain ATCC 43067 / DSM 2661 / JAL-1 / JCM 10045 / NBRC 100440) GN=MJ1249 PE=1 SV=1 Back     alignment and function description
>sp|A4G0J1|DHQS_METM5 3-dehydroquinate synthase OS=Methanococcus maripaludis (strain C5 / ATCC BAA-1333) GN=MmarC5_1678 PE=3 SV=1 Back     alignment and function description
>sp|A5UJ82|DHQS_METS3 3-dehydroquinate synthase OS=Methanobrevibacter smithii (strain PS / ATCC 35061 / DSM 861) GN=Msm_0055 PE=3 SV=1 Back     alignment and function description
>sp|A9A8T5|DHQS_METM6 3-dehydroquinate synthase OS=Methanococcus maripaludis (strain C6 / ATCC BAA-1332) GN=MmarC6_0943 PE=3 SV=1 Back     alignment and function description
>sp|A0B6K6|DHQS_METTP 3-dehydroquinate synthase OS=Methanosaeta thermophila (strain DSM 6194 / PT) GN=Mthe_0539 PE=3 SV=2 Back     alignment and function description
>sp|A6VHZ4|DHQS_METM7 3-dehydroquinate synthase OS=Methanococcus maripaludis (strain C7 / ATCC BAA-1331) GN=MmarC7_1003 PE=3 SV=1 Back     alignment and function description
>sp|Q6M1B0|DHQS_METMP 3-dehydroquinate synthase OS=Methanococcus maripaludis (strain S2 / LL) GN=MMP0006 PE=3 SV=1 Back     alignment and function description
>sp|Q12UJ7|DHQS_METBU 3-dehydroquinate synthase OS=Methanococcoides burtonii (strain DSM 6242) GN=Mbur_2000 PE=3 SV=2 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query366
224140959345 predicted protein [Populus trichocarpa] 0.781 0.828 0.797 1e-134
296082881 998 unnamed protein product [Vitis vinifera] 0.775 0.284 0.778 1e-132
359488897368 PREDICTED: 3-dehydroquinate synthase-lik 0.781 0.777 0.772 1e-130
255552890419 conserved hypothetical protein [Ricinus 0.830 0.725 0.704 1e-127
356572434442 PREDICTED: 3-dehydroquinate synthase-lik 0.814 0.674 0.751 1e-125
449459466423 PREDICTED: 3-dehydroquinate synthase-lik 0.773 0.669 0.752 1e-124
297818494426 hypothetical protein ARALYDRAFT_322953 [ 0.806 0.692 0.724 1e-124
79313976444 uncharacterized protein [Arabidopsis tha 0.778 0.641 0.743 1e-123
30689333422 uncharacterized protein [Arabidopsis tha 0.778 0.675 0.743 1e-123
11994783434 unnamed protein product [Arabidopsis tha 0.765 0.645 0.729 1e-117
>gi|224140959|ref|XP_002323844.1| predicted protein [Populus trichocarpa] gi|222866846|gb|EEF03977.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
 Score =  483 bits (1244), Expect = e-134,   Method: Compositional matrix adjust.
 Identities = 228/286 (79%), Positives = 259/286 (90%)

Query: 49  KPKRVWIWTESKQVMTAAVERGWNTFVFLSENQQLAIDWSTIALLDPLFIKEGEVYDSGD 108
           K KRVWIWTESKQVMT AVERGWNTF+FLS ++QLAIDWS+ + ++PLFI+EGEV D  +
Sbjct: 1   KSKRVWIWTESKQVMTTAVERGWNTFIFLSNHRQLAIDWSSFSFINPLFIEEGEVLDGEN 60

Query: 109 RRVGSIIEVSTPQELQQLQPADGQAENIVIDLPDWQVIPAENIVASFQGSGKTVFAISKT 168
           +RV +I EVSTPQELQQLQP +GQAEN++I+L DWQ+IPAENIVA+FQGS KTV AISKT
Sbjct: 61  KRVATIFEVSTPQELQQLQPENGQAENVIINLLDWQIIPAENIVAAFQGSQKTVLAISKT 120

Query: 169 PSEAQIFLEALEQGLGGIVLKVEDVKAVLALKEYFDGRNEVSNLLSLMKATVTRVDVAGM 228
            SEAQIFLEALE GLGG+VLKVEDV+AV+ LKEY D RNE +NLLSL KAT+TRV VAGM
Sbjct: 121 HSEAQIFLEALEHGLGGVVLKVEDVEAVIKLKEYCDRRNEATNLLSLTKATITRVQVAGM 180

Query: 229 GDRVCVDLCSLMRPGEGLLVGSFARGLFLVHSECLESNYIASRPFRVNAGPVHAYVLVPG 288
           GDRVCVDLCSLM+PGEGLLVGSFARGLFLVHSECLESNYIASRPFRVNAGPVHAYV +PG
Sbjct: 181 GDRVCVDLCSLMKPGEGLLVGSFARGLFLVHSECLESNYIASRPFRVNAGPVHAYVSIPG 240

Query: 289 GKTCYLSELKSGKEVIVVDQKGRQRTAVVGRVKIESRPLILVEAKA 334
           G+TCYLSELK+G+EV V DQ G+ RTA+VGRVKIE+RPLILVEAK+
Sbjct: 241 GRTCYLSELKAGEEVSVADQNGQLRTAIVGRVKIETRPLILVEAKS 286

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|296082881|emb|CBI22182.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
>gi|359488897|ref|XP_002282990.2| PREDICTED: 3-dehydroquinate synthase-like [Vitis vinifera] Back     alignment and taxonomy information
>gi|255552890|ref|XP_002517488.1| conserved hypothetical protein [Ricinus communis] gi|223543499|gb|EEF45030.1| conserved hypothetical protein [Ricinus communis] Back     alignment and taxonomy information
>gi|356572434|ref|XP_003554373.1| PREDICTED: 3-dehydroquinate synthase-like [Glycine max] Back     alignment and taxonomy information
>gi|449459466|ref|XP_004147467.1| PREDICTED: 3-dehydroquinate synthase-like [Cucumis sativus] gi|449520920|ref|XP_004167480.1| PREDICTED: 3-dehydroquinate synthase-like [Cucumis sativus] Back     alignment and taxonomy information
>gi|297818494|ref|XP_002877130.1| hypothetical protein ARALYDRAFT_322953 [Arabidopsis lyrata subsp. lyrata] gi|297322968|gb|EFH53389.1| hypothetical protein ARALYDRAFT_322953 [Arabidopsis lyrata subsp. lyrata] Back     alignment and taxonomy information
>gi|79313976|ref|NP_001030791.1| uncharacterized protein [Arabidopsis thaliana] gi|222424331|dbj|BAH20122.1| AT3G28760 [Arabidopsis thaliana] gi|332643967|gb|AEE77488.1| uncharacterized protein [Arabidopsis thaliana] Back     alignment and taxonomy information
>gi|30689333|ref|NP_189518.2| uncharacterized protein [Arabidopsis thaliana] gi|27754381|gb|AAO22639.1| unknown protein [Arabidopsis thaliana] gi|28973463|gb|AAO64056.1| unknown protein [Arabidopsis thaliana] gi|332643966|gb|AEE77487.1| uncharacterized protein [Arabidopsis thaliana] Back     alignment and taxonomy information
>gi|11994783|dbj|BAB03173.1| unnamed protein product [Arabidopsis thaliana] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query366
TAIR|locus:2098428444 AT3G28760 [Arabidopsis thalian 0.778 0.641 0.743 2.6e-111
TAIR|locus:2098428 AT3G28760 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 1099 (391.9 bits), Expect = 2.6e-111, P = 2.6e-111
 Identities = 212/285 (74%), Positives = 245/285 (85%)

Query:    49 KPKRVWIWTESKQVMTAAVERGWNTFVFLSENQQLAIDWSTIALLDPLFIKEGEVYDSGD 108
             K K+VWIWT  K+VMT AVERGWNTF+F S+N++L+ +WS+IAL+D LFI+E +V D   
Sbjct:    91 KAKKVWIWTMCKEVMTVAVERGWNTFIFSSDNRKLSNEWSSIALMDTLFIEEKKVIDGTG 150

Query:   109 RRVGSIIEVSTPQELQQLQPADGQAENIVIDLPDWQVIPAENIVASFQGSGKTVFAISKT 168
               V S+ EVSTP+EL+ L   + Q ENIV+D  DW+ IPAEN+VA+ QGS KTVFA+S T
Sbjct:   151 NVVASVFEVSTPEELRSLNIENEQIENIVLDFLDWKSIPAENLVAALQGSEKTVFAVSNT 210

Query:   169 PSEAQIFLEALEQGLGGIVLKVEDVKAVLALKEYFDGRNEVSNLLSLMKATVTRVDVAGM 228
             PSEA++FLEALE GLGGI+LK EDVKAVL LKEYFD RNE S+ LSL +AT+TRV + GM
Sbjct:   211 PSEAKLFLEALEHGLGGIILKSEDVKAVLDLKEYFDKRNEESDTLSLTEATITRVQMVGM 270

Query:   229 GDRVCVDLCSLMRPGEGLLVGSFARGLFLVHSECLESNYIASRPFRVNAGPVHAYVLVPG 288
             GDRVCVDLCSLMRPGEGLLVGSFARGLFLVHSECLESNYI SRPFRVNAGPVHAYV VPG
Sbjct:   271 GDRVCVDLCSLMRPGEGLLVGSFARGLFLVHSECLESNYIESRPFRVNAGPVHAYVAVPG 330

Query:   289 GKTCYLSELKSGKEVIVVDQKGRQRTAVVGRVKIESRPLILVEAK 333
             GKTCYLSEL++G+EVIVVDQKG+QRTAVVGRVKIE RPLI+VEAK
Sbjct:   331 GKTCYLSELRTGREVIVVDQKGKQRTAVVGRVKIEKRPLIVVEAK 375


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.319   0.134   0.396    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0      366       358   0.00081  117 3  11 22  0.39    34
                                                     34  0.45    37


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  1
  No. of states in DFA:  614 (65 KB)
  Total size of DFA:  234 KB (2126 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  27.80u 0.11s 27.91t   Elapsed:  00:00:02
  Total cpu time:  27.80u 0.11s 27.91t   Elapsed:  00:00:02
  Start:  Tue May 21 02:13:38 2013   End:  Tue May 21 02:13:40 2013
GO:0009507 "chloroplast" evidence=ISM
GO:0016491 "oxidoreductase activity" evidence=IEA
GO:0055114 "oxidation-reduction process" evidence=IEA
GO:0000023 "maltose metabolic process" evidence=RCA
GO:0019252 "starch biosynthetic process" evidence=RCA

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Your Input:
gw1.XVII.999.1
hypothetical protein (345 aa)
(Populus trichocarpa)
Predicted Functional Partners:
EPSPS
3-phosphoshikimate 1-carboxyvinyltransferase (EC-2.5.1.19) (519 aa)
•     • 0.770
gw1.XIV.2747.1
hypothetical protein (337 aa)
•     • 0.708
gw1.VIII.57.1
annotation not avaliable (321 aa)
•     • 0.563
gw1.XVI.3177.1
hypothetical protein (66 aa)
•       0.501
PDTp
arogenate/prephenate dehydratase (EC-4.2.1.91) (302 aa)
•  •    0.480
fgenesh4_pg.C_scaffold_70000157
hypothetical protein (223 aa)
•    •  0.465
CS2
RecName- Full=Chorismate synthase; EC=4.2.3.5; (437 aa)
•       0.460
CS1
chorismate synthase (EC-4.2.3.5) (438 aa)
•       0.455
gw1.2627.7.1
Predicted protein (172 aa)
•       0.452

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query366
pfam01959347 pfam01959, DHQS, 3-dehydroquinate synthase (EC 4 1e-119
PRK02290344 PRK02290, PRK02290, 3-dehydroquinate synthase; Pro 2e-94
COG1465376 COG1465, COG1465, Predicted alternative 3-dehydroq 6e-83
>gnl|CDD|216810 pfam01959, DHQS, 3-dehydroquinate synthase (EC 4 Back     alignment and domain information 
 Score =  349 bits (898), Expect = e-119
 Identities = 132/291 (45%), Positives = 188/291 (64%), Gaps = 9/291 (3%)

Query: 51  KRVWI-----WTESKQVMTAAVERGWNTFVFLSENQQLAIDWS--TIALLDPLFIKEGEV 103
           K+VW+     W E K+ +T A+E G +  +   E+ +   +    T+A      + + E 
Sbjct: 1   KKVWLKADGPWDERKERITTALESGVDAVLVDEEDVERVRELGRITVAADGTDDLPDLET 60

Query: 104 YDSGDRRVGSIIEVSTPQELQQLQPADGQAENIVIDLPDWQVIPAENIVASFQGSGKTVF 163
                + VG+ +E+   ++ +    A  +A+ ++++  DW +IP EN++A  QGS   V 
Sbjct: 61  LKESGKDVGAYVEILDKEDEEFAAEAAKEADYVIVEGRDWTIIPLENLIARLQGSETKVI 120

Query: 164 AISKTPSEAQIFLEALEQGLGGIVLKVEDVKAVLALKEYFDGRNEVSNLLSLMKATVTRV 223
           A+ ++  EA++ LE LE+G+ G++L  +D   + A+    + ++  S  L L+ ATVT V
Sbjct: 121 AVVRSAEEAKLALETLEKGVDGVLLDSDDPNEIKAIVAVVEEKSSES--LDLVPATVTEV 178

Query: 224 DVAGMGDRVCVDLCSLMRPGEGLLVGSFARGLFLVHSECLESNYIASRPFRVNAGPVHAY 283
           +  GMGDRVCVD CSLM  GEG+LVGS +RG+FLVHSE LES Y+ASRPFRVNAG VHAY
Sbjct: 179 EPVGMGDRVCVDTCSLMEDGEGMLVGSSSRGMFLVHSETLESPYVASRPFRVNAGAVHAY 238

Query: 284 VLVPGGKTCYLSELKSGKEVIVVDQKGRQRTAVVGRVKIESRPLILVEAKA 334
           V VPGGKT YLSELK+G EV+VVD  GR R A+VGRVKIE RPL+L+EA+ 
Sbjct: 239 VRVPGGKTRYLSELKAGDEVLVVDADGRTREAIVGRVKIERRPLLLIEAEY 289

6.1.3). 3-Dehydroquinate synthase is an enzyme in the common pathway of aromatic amino acid biosynthesis that catalyzes the conversion of 3-deoxy-D-arabino-heptulosonic acid 7-phosphate (DAHP) into 3-dehydroquinic acid. This synthesis of aromatic amino acids is an essential metabolic function for most prokaryotic as well as lower eukaryotic cells, including plants. The pathway is absent in humans; therefore, DHQS represents a potential target for the development of novel and selective antimicrobial agents. Owing to the threat posed by the spread of pathogenic bacteria resistant to many currently used antimicrobial drugs, there is clearly a need to develop new anti-infective drugs acting at novel targets. A further potential use for DHQS inhibitors is as herbicides. Length = 347
>gnl|CDD|235025 PRK02290, PRK02290, 3-dehydroquinate synthase; Provisional Back     alignment and domain information
>gnl|CDD|224382 COG1465, COG1465, Predicted alternative 3-dehydroquinate synthase [Amino acid transport and metabolism] Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 366
PRK02290344 3-dehydroquinate synthase; Provisional 100.0
PF01959354 DHQS: 3-dehydroquinate synthase (EC 4.6.1.3); Inte 100.0
COG1465376 Predicted alternative 3-dehydroquinate synthase [A 100.0
PF01079 217 Hint: Hint module; InterPro: IPR001767 This domain 95.38
cd00331217 IGPS Indole-3-glycerol phosphate synthase (IGPS); 92.7
cd00452190 KDPG_aldolase KDPG and KHG aldolase. This family b 92.05
TIGR02311249 HpaI 2,4-dihydroxyhept-2-ene-1,7-dioic acid aldola 91.81
smart00306100 HintN Hint (Hedgehog/Intein) domain N-terminal reg 91.04
PRK05826465 pyruvate kinase; Provisional 90.95
TIGR03239249 GarL 2-dehydro-3-deoxyglucarate aldolase. In E. co 90.87
PRK10128267 2-keto-3-deoxy-L-rhamnonate aldolase; Provisional 90.49
PRK10558256 alpha-dehydro-beta-deoxy-D-glucarate aldolase; Pro 89.93
PTZ00300454 pyruvate kinase; Provisional 89.31
PRK00278260 trpC indole-3-glycerol-phosphate synthase; Reviewe 88.55
cd04729219 NanE N-acetylmannosamine-6-phosphate epimerase (Na 88.55
TIGR00262256 trpA tryptophan synthase, alpha subunit. Tryptopha 88.27
PF00224348 PK: Pyruvate kinase, barrel domain; InterPro: IPR0 87.56
PRK10558256 alpha-dehydro-beta-deoxy-D-glucarate aldolase; Pro 87.49
PF03328221 HpcH_HpaI: HpcH/HpaI aldolase/citrate lyase family 87.21
PRK10128267 2-keto-3-deoxy-L-rhamnonate aldolase; Provisional 87.12
PF01729169 QRPTase_C: Quinolinate phosphoribosyl transferase, 86.62
PRK01130221 N-acetylmannosamine-6-phosphate 2-epimerase; Provi 86.42
CHL00200263 trpA tryptophan synthase alpha subunit; Provisiona 86.4
PLN02591250 tryptophan synthase 86.09
PTZ00066513 pyruvate kinase; Provisional 85.57
TIGR01370315 cysRS possible cysteinyl-tRNA synthetase, Methanoc 85.56
TIGR03239249 GarL 2-dehydro-3-deoxyglucarate aldolase. In E. co 85.32
PRK05848273 nicotinate-nucleotide pyrophosphorylase; Provision 85.11
PF02662124 FlpD: Methyl-viologen-reducing hydrogenase, delta 84.07
cd06220 233 DHOD_e_trans_like2 FAD/NAD binding domain in the e 82.95
cd04732234 HisA HisA. Phosphoribosylformimino-5-aminoimidazol 82.35
PRK08345 289 cytochrome-c3 hydrogenase subunit gamma; Provision 82.14
PRK05826465 pyruvate kinase; Provisional 81.72
PRK05458326 guanosine 5'-monophosphate oxidoreductase; Provisi 80.52
PLN02762509 pyruvate kinase complex alpha subunit 80.07
>PRK02290 3-dehydroquinate synthase; Provisional Back     alignment and domain information 
Probab=100.00  E-value=1.8e-114  Score=841.99  Aligned_cols=301  Identities=41%  Similarity=0.649  Sum_probs=281.9

Q ss_pred             CcEEEEEeCc-----hhHHHHHHHhCCcEEEEcCcchhhhhhccceeeeeeeeecCC---ccccCCCCeeEEEEEecChh
Q 017770           50 PKRVWIWTES-----KQVMTAAVERGWNTFVFLSENQQLAIDWSTIALLDPLFIKEG---EVYDSGDRRVGSIIEVSTPQ  121 (366)
Q Consensus        50 ~K~vWiw~~~-----K~~vT~ALEsG~~~~vv~~~~~~~~~~l~~i~~i~~l~~~~g---~~~~~~gk~v~~~~~v~~~e  121 (366)
                      ||++|||.++     |++||+|||||||+|+|++++++.+++|+++   .+++.+++   ..++.+|++++.|++|.+++
T Consensus         1 mK~vWi~~~~~~~~~k~~vt~AlEsGv~~vvv~~~~~~~v~~lg~i---~~~~~~~~~~~~~~~~~~~~~~~~v~i~~~~   77 (344)
T PRK02290          1 MKFVWIKARPDWEERKEVVTTALESGVDGVVVDEEDVERVRELGRI---KVAADDPDADAVVISGSAGEDGAYVEIRDKE   77 (344)
T ss_pred             CceEEEEcCCCchhHHHHHHHHHHcCCCEEEECHHHhHHHHhhCCe---eEEEEcCCcchhhhcccCCceEEEEEECCHH
Confidence            6999999987     9999999999999999999777777777766   44445555   34678899999999999999


Q ss_pred             hhhhhccccCCCCeEEEeCCCCeeeehhhhhhcccCCCceEEEEcCCHHHHHHHHHHhhcccCeEEEecCCHHHHHHHHH
Q 017770          122 ELQQLQPADGQAENIVIDLPDWQVIPAENIVASFQGSGKTVFAISKTPSEAQIFLEALEQGLGGIVLKVEDVKAVLALKE  201 (366)
Q Consensus       122 d~e~~~~~~~~~~~vvv~~~DW~iIPlENliA~~q~~~~~l~a~v~~~~eA~~al~~LE~G~DGVvl~~~d~~ev~~l~~  201 (366)
                      |++.++.+.+.++++|++++||||||||||||+| +++++||+.++|++||+++|++||+|+|||+|+|+|+++++++++
T Consensus        78 ~e~~a~~~~~~~~~viv~~~dW~iIPlEnlIA~~-~~~~~l~a~v~~~~eA~~a~~~LE~G~dGVvl~~~d~~ei~~~~~  156 (344)
T PRK02290         78 DEEFAAELAKEVDYVIVEGRDWTIIPLENLIADL-GQSGKIIAGVADAEEAKLALEILEKGVDGVLLDPDDPNEIKAIVA  156 (344)
T ss_pred             HHHHHHHhhccCCEEEEECCCCcEecHHHHHhhh-cCCceEEEEeCCHHHHHHHHHHhccCCCeEEECCCCHHHHHHHHH
Confidence            9999999988899999999999999999999999 999999999999999999999999999999999999999999999


Q ss_pred             hhcccccccceeeeeEEEEEEEEEcCCcceEEEeecCCCCCCceEEEeccCceEEEEeeccccCCCCCCCCeeeecCCce
Q 017770          202 YFDGRNEVSNLLSLMKATVTRVDVAGMGDRVCVDLCSLMRPGEGLLVGSFARGLFLVHSECLESNYIASRPFRVNAGPVH  281 (366)
Q Consensus       202 ~~~~~~~~~~~l~L~~atVt~V~~vGmGDRVCVDtcSll~~GEGmLVGS~S~glFLVhsEt~es~Yva~RPFRVNAGaVH  281 (366)
                      +++.   ++++++|++||||+|+|+||||||||||||+|++||||||||||+|||||||||+++|||++|||||||||||
T Consensus       157 ~~~~---~~~~l~L~~a~Vt~V~~vG~GdRVCVDtcsll~~gEGmLVGs~s~glfLVhsEt~~~pYva~RPFRVNAGaVh  233 (344)
T PRK02290        157 LIEE---AREKLELVPATVTRVEPVGMGDRVCVDTCSLMEEGEGMLVGSSSRGMFLVHAETEENPYVASRPFRVNAGAVH  233 (344)
T ss_pred             HHhc---cCCcceeEEEEEEEEEEcCCccEEEEEccccCCCCceEEEcccCCcEEEEecccccCCCccCCCeeEecCcce
Confidence            8854   7889999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             eEEEecCCceeeeeeccCCCeEEEEcCCCCeeEEeeeeEEEeccceEEEEEEeeccCCCceeeEEEeec-----cccCCC
Q 017770          282 AYVLVPGGKTCYLSELKSGKEVIVVDQKGRQRTAVVGRVKIESRPLILVEAKALALAGHSEPSLFLWFL-----VCTSSS  356 (366)
Q Consensus       282 aYv~~PggkT~YLSEL~sG~eVLvVd~~G~tR~a~VGRvKIE~RPLlLIeAe~~~~~~g~~~sviLQnA-----~~~~~~  356 (366)
                      ||+++|||||+|||||+|||+||+||++|++|+++|||||||+|||+||||++    +|+++++|||||     +.+.++
T Consensus       234 aYv~~pgg~T~YLsEL~sG~eVlvVd~~G~tR~~~VGRvKIE~RPL~lIeAe~----~g~~~~viLQnaetIrlv~~dG~  309 (344)
T PRK02290        234 AYVRVPGDKTRYLSELRSGDEVLVVDADGNTREAIVGRVKIEKRPLLLIEAEY----GGKRIRTILQNAETIRLVTPDGK  309 (344)
T ss_pred             eEEEcCCCcchhhHhhcCCCEEEEEeCCCCEEEEEeeEEEEeeccEEEEEEEe----CCeEEEEEEecCcEEEEECCCCC
Confidence            99999999999999999999999999999999999999999999999999999    899999999996     456667


Q ss_pred             ceeee
Q 017770          357 LIPSS  361 (366)
Q Consensus       357 ~~~~~  361 (366)
                      ++||.
T Consensus       310 ~vsVt  314 (344)
T PRK02290        310 PVSVV  314 (344)
T ss_pred             Eeeee
Confidence            77764

>PF01959 DHQS: 3-dehydroquinate synthase (EC 4 Back     alignment and domain information
>COG1465 Predicted alternative 3-dehydroquinate synthase [Amino acid transport and metabolism] Back     alignment and domain information
>PF01079 Hint: Hint module; InterPro: IPR001767 This domain identifies a group of cysteine peptidases correspond to MEROPS peptidase family C46 (clan CH) Back     alignment and domain information
>cd00331 IGPS Indole-3-glycerol phosphate synthase (IGPS); an enzyme in the tryptophan biosynthetic pathway, catalyzing the ring closure reaction of 1-(o-carboxyphenylamino)-1-deoxyribulose-5-phosphate (CdRP) to indole-3-glycerol phosphate (IGP), accompanied by the release of carbon dioxide and water Back     alignment and domain information
>cd00452 KDPG_aldolase KDPG and KHG aldolase Back     alignment and domain information
>TIGR02311 HpaI 2,4-dihydroxyhept-2-ene-1,7-dioic acid aldolase Back     alignment and domain information
>smart00306 HintN Hint (Hedgehog/Intein) domain N-terminal region Back     alignment and domain information
>PRK05826 pyruvate kinase; Provisional Back     alignment and domain information
>TIGR03239 GarL 2-dehydro-3-deoxyglucarate aldolase Back     alignment and domain information
>PRK10128 2-keto-3-deoxy-L-rhamnonate aldolase; Provisional Back     alignment and domain information
>PRK10558 alpha-dehydro-beta-deoxy-D-glucarate aldolase; Provisional Back     alignment and domain information
>PTZ00300 pyruvate kinase; Provisional Back     alignment and domain information
>PRK00278 trpC indole-3-glycerol-phosphate synthase; Reviewed Back     alignment and domain information
>cd04729 NanE N-acetylmannosamine-6-phosphate epimerase (NanE) converts N-acetylmannosamine-6-phosphate to N-acetylglucosamine-6-phosphate Back     alignment and domain information
>TIGR00262 trpA tryptophan synthase, alpha subunit Back     alignment and domain information
>PF00224 PK: Pyruvate kinase, barrel domain; InterPro: IPR015793 Pyruvate kinase (2 Back     alignment and domain information
>PRK10558 alpha-dehydro-beta-deoxy-D-glucarate aldolase; Provisional Back     alignment and domain information
>PF03328 HpcH_HpaI: HpcH/HpaI aldolase/citrate lyase family; InterPro: IPR005000 This family includes 2,4-dihydroxyhept-2-ene-1,7-dioic acid aldolase (4 Back     alignment and domain information
>PRK10128 2-keto-3-deoxy-L-rhamnonate aldolase; Provisional Back     alignment and domain information
>PF01729 QRPTase_C: Quinolinate phosphoribosyl transferase, C-terminal domain; InterPro: IPR002638 Quinolinate phosphoribosyl transferase (QPRTase) or nicotinate-nucleotide pyrophosphorylase 2 Back     alignment and domain information
>PRK01130 N-acetylmannosamine-6-phosphate 2-epimerase; Provisional Back     alignment and domain information
>CHL00200 trpA tryptophan synthase alpha subunit; Provisional Back     alignment and domain information
>PLN02591 tryptophan synthase Back     alignment and domain information
>PTZ00066 pyruvate kinase; Provisional Back     alignment and domain information
>TIGR01370 cysRS possible cysteinyl-tRNA synthetase, Methanococcus type Back     alignment and domain information
>TIGR03239 GarL 2-dehydro-3-deoxyglucarate aldolase Back     alignment and domain information
>PRK05848 nicotinate-nucleotide pyrophosphorylase; Provisional Back     alignment and domain information
>PF02662 FlpD: Methyl-viologen-reducing hydrogenase, delta subunit; InterPro: IPR003813 Methyl-viologen-reducing hydrogenase (MVH) is one of the enzymes involved in methanogenesis and coded in the mth-flp-mvh-mrt cluster of methane genes in Methanothermobacter thermautotrophicus (Methanobacterium thermoformicicum) [] Back     alignment and domain information
>cd06220 DHOD_e_trans_like2 FAD/NAD binding domain in the electron transfer subunit of dihydroorotate dehydrogenase-like proteins Back     alignment and domain information
>cd04732 HisA HisA Back     alignment and domain information
>PRK08345 cytochrome-c3 hydrogenase subunit gamma; Provisional Back     alignment and domain information
>PRK05826 pyruvate kinase; Provisional Back     alignment and domain information
>PRK05458 guanosine 5'-monophosphate oxidoreductase; Provisional Back     alignment and domain information
>PLN02762 pyruvate kinase complex alpha subunit Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query366
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 2e-06
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
 Score = 49.1 bits (116), Expect = 2e-06
 Identities = 46/329 (13%), Positives = 99/329 (30%), Gaps = 112/329 (34%)

Query: 54  WIWTESKQVMTAAVERGWNTFVFLSENQQLAIDWSTIALLDPLFIKEGEVYDSGDRRVGS 113
           ++ +    + T   +    T +++ +  +L   ++   +     +           R+  
Sbjct: 93  FLMS---PIKTEQRQPSMMTRMYIEQRDRL---YNDNQVFAKYNVS----------RLQP 136

Query: 114 IIEVSTPQELQQLQPADGQAENIVIDLPDWQVIPAENIVASFQGSGKTVFAISKTPSEAQ 173
            +++   Q L +L+PA    +N++ID                 GSGKT  A+        
Sbjct: 137 YLKLR--QALLELRPA----KNVLID--------------GVLGSGKTWVALD------- 169

Query: 174 IFLEALEQGLGGIVLKVEDVKAVLALKEY---FDGRNEVSNLLSLMKATVTRVDVAGMGD 230
                        V     V+  +  K +       N    +L +++             
Sbjct: 170 -------------VCLSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQ------------- 203

Query: 231 RVCVDLCSLMRPGEGLLVGSFARGLFLVHSECLE-SNYIASRPFRVNAGPVHAYVLVPGG 289
                L   + P         +     +HS   E    + S+P+  N       +LV   
Sbjct: 204 ----KLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYE-NC------LLV--- 249

Query: 290 KTCYLSELKSGKEV--------IVVDQKGRQRTAVVG-----RVKIESRPLILVEAKALA 336
               L  +++ K          I++  + +Q T  +       + ++   + L   +   
Sbjct: 250 ----LLNVQNAKAWNAFNLSCKILLTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVK- 304

Query: 337 LAGHSEPSLFLWFLVCTSSSLIPSSIAVN 365
                  SL L +L C    L    +  N
Sbjct: 305 -------SLLLKYLDCRPQDLPREVLTTN 326

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query366
1at0_A145 17-hedgehog; developmental signaling molecule, cho 95.31
3qz6_A261 HPCH/HPAI aldolase; structural genomics, PSI-biolo 92.97
3qja_A272 IGPS, indole-3-glycerol phosphate synthase; struct 92.89
2in0_A139 Endonuclease PI-MTUI; hydrolase; 1.60A {Mycobacter 91.25
2v5j_A287 2,4-dihydroxyhept-2-ENE-1,7-dioic acid aldolase; l 90.86
1dxe_A256 2-dehydro-3-deoxy-galactarate aldolase; class II a 89.92
1mi8_A158 DNAB intein; all beta-strands, hydrolase; 2.00A {S 89.83
2vws_A267 YFAU, 2-keto-3-deoxy sugar aldolase; lyase, escher 89.39
3q58_A229 N-acetylmannosamine-6-phosphate 2-epimerase; TIM b 89.35
1am2_A 199 MXE GYRA intein; protein splicing; 2.20A {Mycobact 89.02
2v82_A212 2-dehydro-3-deoxy-6-phosphogalactonate aldolase; l 88.99
3luf_A259 Two-component system response regulator/ggdef doma 88.86
3q58_A229 N-acetylmannosamine-6-phosphate 2-epimerase; TIM b 86.25
3qz6_A261 HPCH/HPAI aldolase; structural genomics, PSI-biolo 84.95
3igs_A232 N-acetylmannosamine-6-phosphate 2-epimerase 2; ene 84.64
3igs_A232 N-acetylmannosamine-6-phosphate 2-epimerase 2; ene 84.37
1dxe_A256 2-dehydro-3-deoxy-galactarate aldolase; class II a 84.1
1izc_A339 Macrophomate synthase intermolecular diels-aldera; 83.99
3bo9_A326 Putative nitroalkan dioxygenase; TM0800, structura 83.5
3paj_A320 Nicotinate-nucleotide pyrophosphorylase, carboxyl; 83.4
3qtg_A461 Pyruvate kinase, PK; TIM barrel, glycolysis, trans 83.0
3vnd_A267 TSA, tryptophan synthase alpha chain; psychrophili 82.88
1wa3_A205 2-keto-3-deoxy-6-phosphogluconate aldolase; KDPG, 81.12
1qop_A268 Tryptophan synthase alpha chain; lyase, carbon-oxy 81.07
1sgj_A284 Citrate lyase, beta subunit; trimer, TIM barrel, s 80.44
3usb_A511 Inosine-5'-monophosphate dehydrogenase; structural 80.25
2imz_A168 Endonuclease PI-MTUI; N-terminal cysteine sulfinic 80.17
>1at0_A 17-hedgehog; developmental signaling molecule, cholesterol transfer, signaling protein; 1.90A {Drosophila melanogaster} SCOP: b.86.1.1 Back     alignment and structure
Probab=95.31  E-value=0.042  Score=46.74  Aligned_cols=53  Identities=17%  Similarity=0.251  Sum_probs=38.7

Q ss_pred             eeEEEecCCceeeeeeccCCCeEEEEcCCCCeeEEe----eeeEEEeccceEEEEEE
Q 017770          281 HAYVLVPGGKTCYLSELKSGKEVIVVDQKGRQRTAV----VGRVKIESRPLILVEAK  333 (366)
Q Consensus       281 HaYv~~PggkT~YLSEL~sG~eVLvVd~~G~tR~a~----VGRvKIE~RPLlLIeAe  333 (366)
                      -+-|.+++|.++-++||+.||+||..|.+|+.....    ..|-.-.+++++-|+.+
T Consensus         5 ~t~V~~~~G~~k~i~eL~~GD~Vla~d~~G~~~~s~V~~~~~r~~~~~~~f~~I~t~   61 (145)
T 1at0_A            5 ESTALLESGVRKPLGELSIGDRVLSMTANGQAVYSEVILFMDRNLEQMQNFVQLHTD   61 (145)
T ss_dssp             TCEEEBTTSCEEEGGGCCTTCEEEEECTTSCEEEEEEEEEEEEEEEEEEEEEEEEET
T ss_pred             CCEEEeCCCCEeEHHHcCCCCEEEEECCCCCEEEEEEEEEEeeCCCcceeEEEEEEC
Confidence            356899999999999999999999999999853322    23323234567777654
>3qz6_A HPCH/HPAI aldolase; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomics, MCSG; 2.00A {Desulfitobacterium hafniense} SCOP: c.1.12.0 Back     alignment and structure
>3qja_A IGPS, indole-3-glycerol phosphate synthase; structural genomics, T structural genomics consortium, TBSGC, lyase; 1.29A {Mycobacterium tuberculosis} PDB: 3t40_A* 3t44_A* 3t55_A* 3t78_A* 4fb7_A* Back     alignment and structure
>2in0_A Endonuclease PI-MTUI; hydrolase; 1.60A {Mycobacterium tuberculosis} PDB: 2l8l_A 2in9_A 2in8_A 3ifj_A 3igd_A Back     alignment and structure
>2v5j_A 2,4-dihydroxyhept-2-ENE-1,7-dioic acid aldolase; lyase, class II aldolase, homoprotocatechuate, aromatic DEGR aromatic hydrocarbons catabolism; 1.60A {Escherichia coli} PDB: 2v5k_A Back     alignment and structure
>1dxe_A 2-dehydro-3-deoxy-galactarate aldolase; class II aldolase; 1.8A {Escherichia coli} SCOP: c.1.12.5 PDB: 1dxf_A Back     alignment and structure
>1mi8_A DNAB intein; all beta-strands, hydrolase; 2.00A {Synechocystis SP} SCOP: b.86.1.2 Back     alignment and structure
>2vws_A YFAU, 2-keto-3-deoxy sugar aldolase; lyase, escherichia coli K-12 protein YFAU, 2-keto-3-deoxy SU aldolase, degradation of homoprotocatechuate; 1.39A {Escherichia coli} PDB: 2vwt_A Back     alignment and structure
>3q58_A N-acetylmannosamine-6-phosphate 2-epimerase; TIM beta/alpha barrel, ribulose-phosphate binding barrel, carbohydrate metabolic process; HET: BTB; 1.80A {Salmonella enterica subsp} Back     alignment and structure
>1am2_A MXE GYRA intein; protein splicing; 2.20A {Mycobacterium xenopi} SCOP: b.86.1.2 Back     alignment and structure
>2v82_A 2-dehydro-3-deoxy-6-phosphogalactonate aldolase; lyase, kdpgal; HET: KDP; 2.1A {Escherichia coli} PDB: 2v81_A* Back     alignment and structure
>3luf_A Two-component system response regulator/ggdef domain protein; structural genomics, ASA_2441, PSI-2, protein structure initiative; HET: MSE; 1.76A {Aeromonas salmonicida} PDB: 3mf4_A* Back     alignment and structure
>3q58_A N-acetylmannosamine-6-phosphate 2-epimerase; TIM beta/alpha barrel, ribulose-phosphate binding barrel, carbohydrate metabolic process; HET: BTB; 1.80A {Salmonella enterica subsp} Back     alignment and structure
>3qz6_A HPCH/HPAI aldolase; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomics, MCSG; 2.00A {Desulfitobacterium hafniense} SCOP: c.1.12.0 Back     alignment and structure
>3igs_A N-acetylmannosamine-6-phosphate 2-epimerase 2; energy metabolism, sugars, csgid, carbohydrate metabolism, isomerase; HET: MSE 16G; 1.50A {Salmonella enterica subsp} SCOP: c.1.2.0 Back     alignment and structure
>3igs_A N-acetylmannosamine-6-phosphate 2-epimerase 2; energy metabolism, sugars, csgid, carbohydrate metabolism, isomerase; HET: MSE 16G; 1.50A {Salmonella enterica subsp} SCOP: c.1.2.0 Back     alignment and structure
>1dxe_A 2-dehydro-3-deoxy-galactarate aldolase; class II aldolase; 1.8A {Escherichia coli} SCOP: c.1.12.5 PDB: 1dxf_A Back     alignment and structure
>1izc_A Macrophomate synthase intermolecular diels-aldera; TIM-barrel, pyruvate Mg(II) complex, lyase; 1.70A {Macrophoma commelinae} SCOP: c.1.12.5 Back     alignment and structure
>3bo9_A Putative nitroalkan dioxygenase; TM0800, structural genomics center for structural genomics, JCSG, protein structure INI PSI-2; HET: MSE 2PE; 2.71A {Thermotoga maritima MSB8} Back     alignment and structure
>3paj_A Nicotinate-nucleotide pyrophosphorylase, carboxyl; TIM barrel, pyridin dicarboxylate, 5-phospho-alpha-D-ribose 1-diphosphate; 2.00A {Vibrio cholerae o1 biovar el tor} Back     alignment and structure
>3qtg_A Pyruvate kinase, PK; TIM barrel, glycolysis, transferase; 2.20A {Pyrobaculum aerophilum} Back     alignment and structure
>3vnd_A TSA, tryptophan synthase alpha chain; psychrophilic enzyme, cold adaptation; HET: PE8; 2.60A {Shewanella frigidimarina} Back     alignment and structure
>1wa3_A 2-keto-3-deoxy-6-phosphogluconate aldolase; KDPG, pyruvate, lyase; 1.9A {Thermotoga maritima} SCOP: c.1.10.1 PDB: 1vlw_A Back     alignment and structure
>1qop_A Tryptophan synthase alpha chain; lyase, carbon-oxygen lyase, tryptophan biosynthesis, pyridoxal phosphate; HET: IPL PLP; 1.4A {Salmonella typhimurium} SCOP: c.1.2.4 PDB: 1k8x_A* 1wbj_A* 2clk_A* 2j9z_A* 3cep_A* 1k8y_A* 1a5s_A* 1a50_A* 1c29_A* 1c8v_A* 1c9d_A* 1bks_A* 1cx9_A* 1fuy_A* 1cw2_A* 1k7e_A* 1k7f_A* 1k7x_A* 1k3u_A* 1k8z_A* ... Back     alignment and structure
>1sgj_A Citrate lyase, beta subunit; trimer, TIM barrel, structural genomics, PSI, protein structure initiative; 1.84A {Deinococcus radiodurans} SCOP: c.1.12.5 Back     alignment and structure
>3usb_A Inosine-5'-monophosphate dehydrogenase; structural genomics, center for structural genomics of infec diseases, csgid, TIM barrel, CBS-domain; HET: MSE IMP; 2.38A {Bacillus anthracis} PDB: 3tsd_A* 3tsb_A* Back     alignment and structure
>2imz_A Endonuclease PI-MTUI; N-terminal cysteine sulfinic acid C-terminal aminosuccinimide, hydrolase; 1.70A {Mycobacterium tuberculosis} Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query366
d1dxea_253 2-dehydro-3-deoxy-galactarate aldolase {Escherichi 92.51
d1dxea_253 2-dehydro-3-deoxy-galactarate aldolase {Escherichi 92.49
d1at0a_145 Hedgehog {Fruit fly (Drosophila melanogaster) [Tax 92.23
d1e0ta2246 Pyruvate kinase, N-terminal domain {Escherichia co 89.71
d1a3xa2265 Pyruvate kinase, N-terminal domain {Baker's yeast 89.18
d1izca_299 Macrophomate synthase {Macrophoma commelinae [TaxI 88.82
d1izca_299 Macrophomate synthase {Macrophoma commelinae [TaxI 87.16
d2g50a2282 Pyruvate kinase, N-terminal domain {Rabbit (Orycto 86.24
d1o4ua1170 Quinolinic acid phosphoribosyltransferase (Nicotin 84.98
d1pkla2258 Pyruvate kinase, N-terminal domain {Leishmania mex 84.98
>d1dxea_ c.1.12.5 (A:) 2-dehydro-3-deoxy-galactarate aldolase {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Phosphoenolpyruvate/pyruvate domain
family: HpcH/HpaI aldolase
domain: 2-dehydro-3-deoxy-galactarate aldolase
species: Escherichia coli [TaxId: 562]

Probab=92.51  E-value=0.25  Score=43.68  Aligned_cols=92  Identities=16%  Similarity=0.138  Sum_probs=71.5

Q ss_pred             CeeEEEEEecChhhhhhhccccCCCCeEEEeCC--CCeeeehhhhhhcccCCCceEEEEcCCHHHHHHHHHHhhcccCeE
Q 017770          109 RRVGSIIEVSTPQELQQLQPADGQAENIVIDLP--DWQVIPAENIVASFQGSGKTVFAISKTPSEAQIFLEALEQGLGGI  186 (366)
Q Consensus       109 k~v~~~~~v~~~ed~e~~~~~~~~~~~vvv~~~--DW~iIPlENliA~~q~~~~~l~a~v~~~~eA~~al~~LE~G~DGV  186 (366)
                      ..+|..+.+.++.-.|.++.  ...|+++++..  .+..==+++++.+++..+...+..+.+. +...+..+|+.|++||
T Consensus        16 ~~~G~~~~~~~p~~~ei~a~--~G~Dfv~iD~EHg~~~~~~~~~~i~a~~~~g~~~~VRvp~~-~~~~i~~~LD~Ga~GI   92 (253)
T d1dxea_          16 VQIGCWSALSNPISTEVLGL--AGFDWLVLDGEHAPNDISTFIPQLMALKGSASAPVVRVPTN-EPVIIKRLLDIGFYNF   92 (253)
T ss_dssp             CEEEEEECSCSHHHHHHHTT--SCCSEEEEESSSSSCCHHHHHHHHHHTTTCSSEEEEECSSS-CHHHHHHHHHTTCCEE
T ss_pred             CEEEEEecCCCHHHHHHHHc--CCCCEEEEecccCCCChhHHHHHHHHHhccCCCceecCCCC-CHHHHHHHHhcCccEE
Confidence            44678888888887666664  35899999876  2333356899999999888899999875 4567788999999999


Q ss_pred             EEe-cCCHHHHHHHHHhh
Q 017770          187 VLK-VEDVKAVLALKEYF  203 (366)
Q Consensus       187 vl~-~~d~~ev~~l~~~~  203 (366)
                      ++. .+++++++++.+..
T Consensus        93 ivP~v~s~eea~~~v~~~  110 (253)
T d1dxea_          93 LIPFVETKEEAELAVAST  110 (253)
T ss_dssp             EESCCCSHHHHHHHHHTT
T ss_pred             EecccCCHHHHHHHHHhh
Confidence            996 46788888877765
>d1dxea_ c.1.12.5 (A:) 2-dehydro-3-deoxy-galactarate aldolase {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1at0a_ b.86.1.1 (A:) Hedgehog {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} Back     information, alignment and structure
>d1e0ta2 c.1.12.1 (A:1-69,A:168-344) Pyruvate kinase, N-terminal domain {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1a3xa2 c.1.12.1 (A:1-87,A:189-366) Pyruvate kinase, N-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1izca_ c.1.12.5 (A:) Macrophomate synthase {Macrophoma commelinae [TaxId: 108330]} Back     information, alignment and structure
>d1izca_ c.1.12.5 (A:) Macrophomate synthase {Macrophoma commelinae [TaxId: 108330]} Back     information, alignment and structure
>d2g50a2 c.1.12.1 (A:12-115,A:218-395) Pyruvate kinase, N-terminal domain {Rabbit (Oryctolagus cuniculus) [TaxId: 9986]} Back     information, alignment and structure
>d1o4ua1 c.1.17.1 (A:104-273) Quinolinic acid phosphoribosyltransferase (Nicotinate-nucleotide pyrophosphorylase, NadC), C-terminal domain {Thermotoga maritima [TaxId: 2336]} Back     information, alignment and structure
>d1pkla2 c.1.12.1 (A:1-87,A:187-357) Pyruvate kinase, N-terminal domain {Leishmania mexicana [TaxId: 5665]} Back     information, alignment and structure