Citrus Sinensis ID: 017780

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360------
MPFTTTHLRLISPLIHPSSPSIRSLVSANTKPFRLSASSAAMDSNSSCMLVLSGKSLAENEIAESLKSNSTLKLPDNSEVSIHLQSEIVKQESFDVELFMNSLATNRFGRLLIWSPRLPSTHDVVSHNFCELPVGAVCVADVQFKGRGRSKNAWESPKGCLMFSFTIQMEDGRVVPLLQYVASLALTEAINYVCSRDGLPCLDIKIKWPNDLYLNGIKVGGILCTSTYRTKKFNVSIGIGLNVNNEEPTTCLNAVLRKLSDSTYQFRREDVIAAFFNKFETFYDTFINQGFQTLEELYYKTWLHSGQRVIVQEKNEDQVVENVVTIQGLTSSGYLLAIGDDNQMCELHPDGNSLDFFKGLIRRKLQ
ccccccccccccccccccccccccccccccccHHccccHHHHHHHHHHHHHHccccccHHHHHHHHcccccccccccccEEEEEEccccccccccHHHHHccccccccccEEEEccccccHHHHHHHHccccccccEEEEcccccccccccccccccccccEEEEEEEcccccccHHHHHHHHHHHHHHHHHHHcccccccccccccccccEEEccEEEEEEEEEEEEccccEEEEEEEEEEcccccccccHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHcccccEEEEEEccccEEEEEEEEEEEEccccEEEEEEccccEEEEEcccEEEEccccccccccc
ccccccHHHEccccccccccccccccccccccccEcccHHHccccccEEEEEEccccccccccccHHHHHHccccccccEEHEHcHHHcccccccHHHHHHHccccccccEEEEEcccccHHHHHHHHHHcccccEEEEEEEccccccccccEEEcccccEEEEEEEccccccccHHHHHHHHHHHHHHHHHHHcccccccccEEEEccccEEEcccEEEEEEEEEEccccEEEEEEEEEEEccccccHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHcccEEEEEEccccEEEEEEEEEEEEccccEEEEEccccEEEEEEcccccEHHHHccEccccc
mpfttthlrlisplihpsspsirslvsantkpfrlsassaamdsnsscMLVLSGKSLAENEIAEslksnstlklpdnsevsIHLQSEIVKQESFDVELFMNSLATNRFgrlliwsprlpsthdvvshnfcelpvgavcvadvqfkgrgrsknawespkgclmfsftiqmedgrvVPLLQYVASLALTEAINYVcsrdglpcldikikwpndlylngikVGGILCTSTYRTKKFNVSIgiglnvnneeptTCLNAVLRKLSDSTYQFRREDVIAAFFNKFETFYDTFINQGFQTLEELYYKTWLHSGQRVIVQEKNEDQVVENVVTIQGLTSSGyllaigddnqmcelhpdgnslDFFKGLIRRKLQ
mpfttthlrlisplihpsspsiRSLVSANTKPFRLSASSAAMDSNSSCMLVLSGKSLAENEIAESlksnstlklpdNSEVSIHLQSEIVKQESFDVELFMNSLATNRFGRLLIWSPRLPSTHDVVSHNFCELPVGAVCVADVQFKgrgrsknawespkGCLMFSFTIQMEDGRVVPLLQYVASLALTEAINYVCSRDGLPCLDIKIKWPNDLYLNGIKVGGILCTSTYRTKKFNVSIGiglnvnneepTTCLNAVLRKLSDSTYQFRREDVIAAFFNKFETFYDTFINQGFQTLEELYYKTWLHSGQRVIVQEKNEDQVVENVVTIQGLTSSGYLLAIGDDNQMCELHPDGNSLDFFKGLIRRKLQ
MPFTTTHlrlisplihpsspsirslVSANTKPFRLsassaamdsnssCMLVLSGKSLAENEIAESLKSNSTLKLPDNSEVSIHLQSEIVKQESFDVELFMNSLATNRFGRLLIWSPRLPSTHDVVSHNFCELPVGAVCVADVQFKGRGRSKNAWESPKGCLMFSFTIQMEDGRVVPLLQYVASLALTEAINYVCSRDGLPCLDIKIKWPNDLYLNGIKVGGILCTSTYRTKKFNVSIGIGLNVNNEEPTTCLNAVLRKLSDSTYQFRREDVIAAFFNKFETFYDTFINQGFQTLEELYYKTWLHSGQRVIVQEKNEDQVVENVVTIQGLTSSGYLLAIGDDNQMCELHPDGNSLDFFKGLIRRKLQ
**********************************************************************************HLQSEIVKQESFDVELFMNSLATNRFGRLLIWSPRLPSTHDVVSHNFCELPVGAVCVADVQFKGRGRSKNAWESPKGCLMFSFTIQMEDGRVVPLLQYVASLALTEAINYVCSRDGLPCLDIKIKWPNDLYLNGIKVGGILCTSTYRTKKFNVSIGIGLNVNNEEPTTCLNAVLRKLSDSTYQFRREDVIAAFFNKFETFYDTFINQGFQTLEELYYKTWLHSGQRVIVQEKNEDQVVENVVTIQGLTSSGYLLAIGDDNQMCELHPDGNSLDFFKGLI*****
*******LRLISPL*******************RLSASSAAMDSNSSCMLVLSGK**************STLKLPDNSEVSIHLQSEIVKQESFDVELFMNSLATNRFGRLLIWSPRLPSTHDVVSHNFCELPVGAVCVADVQFKGRGRSKNAWESPKGCLMFSFTIQMEDGRVVPLLQYVASLALTEAINYVCSRDGLPCLDIKIKWPNDLYLNGIKVGGILCTSTYRTKKFNVSIGIGLNVNNEEPTTCLNAVLRKLSDSTYQFRREDVIAAFFNKFETFYDTFINQGFQTLEELYYKTWLHSGQRVIVQEKNEDQVVENVVTIQGLTSSGYLLAIGDDNQMCELHPDGNSLDFFKGLIRRKL*
MPFTTTHLRLISPLIHPSSPSIRSLVSANTKPFRLSASSAAMDSNSSCMLVLSGKSLAENEIAESLKSNSTLKLPDNSEVSIHLQSEIVKQESFDVELFMNSLATNRFGRLLIWSPRLPSTHDVVSHNFCELPVGAVCVADVQFKG********ESPKGCLMFSFTIQMEDGRVVPLLQYVASLALTEAINYVCSRDGLPCLDIKIKWPNDLYLNGIKVGGILCTSTYRTKKFNVSIGIGLNVNNEEPTTCLNAVLRKLSDSTYQFRREDVIAAFFNKFETFYDTFINQGFQTLEELYYKTWLHSGQRVIVQEKNEDQVVENVVTIQGLTSSGYLLAIGDDNQMCELHPDGNSLDFFKGLIRRKLQ
*PFTTTHLRLISPLIHPSSPSIRSLVSANTKPFRL*AS***MDSNSSCMLVLSGKSLAENEIAESLKSNSTLKLPDNSEVSIHLQSEIVKQESFDVELFMNSLATNRFGRLLIWSPRLPSTHDVVSHNFCELPVGAVCVADVQFKGRGRSKNAWESPKGCLMFSFTIQMEDGRVVPLLQYVASLALTEAINYVCSRDGLPCLDIKIKWPNDLYLNGIKVGGILCTSTYRTKKFNVSIGIGLNVNNEEPTTCLNAVLRKLSDSTYQFRREDVIAAFFNKFETFYDTFINQGFQTLEELYYKTWLHSGQRVIVQEKNEDQVVENVVTIQGLTSSGYLLAIGDDNQMCELHPDGNSLDFFKGLIRR***
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
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ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
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MPFTTTHLRLISPLIHPSSPSIRSLVSANTKPFRLSASSAAMDSNSSCMLVLSGKSLAENEIAESLKSNSTLKLPDNSEVSIHLQSEIVKQESFDVELFMNSLATNRFGRLLIWSPRLPSTHDVVSHNFCELPVGAVCVADVQFKGRGRSKNAWESPKGCLMFSFTIQMEDGRVVPLLQYVASLALTEAINYVCSRDGLPCLDIKIKWPNDLYLNGIKVGGILCTSTYRTKKFNVSIGIGLNVNNEEPTTCLNAVLRKLSDSTYQFRREDVIAAFFNKFETFYDTFINQGFQTLEELYYKTWLHSGQRVIVQEKNEDQVVENVVTIQGLTSSGYLLAIGDDNQMCELHPDGNSLDFFKGLIRRKLQ
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query366 2.2.26 [Sep-21-2011]
Q920N2722 Biotin--protein ligase OS yes no 0.767 0.389 0.313 3e-39
P50747726 Biotin--protein ligase OS yes no 0.737 0.371 0.297 2e-37
O14353631 Biotin--protein ligase OS yes no 0.811 0.470 0.328 4e-35
P48445690 Biotin--protein ligase OS yes no 0.729 0.386 0.273 2e-22
P46363302 Bifunctional protein BirA yes no 0.622 0.754 0.269 5e-15
E0U174325 Bifunctional protein BirA yes no 0.519 0.584 0.302 1e-13
P29906240 Biotin--[acetyl-CoA-carbo yes no 0.519 0.791 0.276 1e-13
P0CI75325 Bifunctional protein BirA yes no 0.519 0.584 0.307 2e-13
P06709321 Bifunctional protein BirA N/A no 0.453 0.517 0.272 4e-11
Q5F5C8 592 Bifunctional enzyme BirA/ yes no 0.363 0.224 0.317 9e-11
>sp|Q920N2|BPL1_MOUSE Biotin--protein ligase OS=Mus musculus GN=Hlcs PE=1 SV=1 Back     alignment and function desciption
 Score =  162 bits (411), Expect = 3e-39,   Method: Compositional matrix adjust.
 Identities = 94/300 (31%), Positives = 156/300 (52%), Gaps = 19/300 (6%)

Query: 78  SEVSIHLQSEIVKQESFDVELFMNSLATNRFGRLLIWSPRLPSTHDVVSHNFCELP--VG 135
           S + +    E    E F +E +  +L T R G++++++    +T  ++     E+P  +G
Sbjct: 431 SSMPVVTDPEAFSSEHFSLETYRQNLQTTRLGKVILFAEVTSTTMSLLDGLMFEMPQEMG 490

Query: 136 AVCVADVQFKGRGRSKNAWESPKGC----LMFSFTIQMEDGRVVPLLQYVASLALTEAIN 191
            + +A  Q +G+GR  NAW SP GC    L+    ++ + G+ +P +Q++ SLA+ EA+ 
Sbjct: 491 LIAIAVRQTQGKGRGPNAWLSPVGCALSTLLVFIPLRSQLGQRIPFVQHLMSLAVVEAVR 550

Query: 192 YVCSRDGLPCLDIKIKWPNDLYLNGI-KVGGILCTSTYRTKKFNVSIGIGLNVNNEEPTT 250
            +    G   +++++KWPND+Y + + K+GG+L  ST   + F + IG G NV N  PT 
Sbjct: 551 SI---PGYEDINLRVKWPNDIYYSDLMKIGGVLVNSTLMGETFYILIGCGFNVTNSNPTI 607

Query: 251 CLNAVL----RKLSDSTYQFRREDVIAAFFNKFETFYDTFINQGFQTLEELYYKTWLHSG 306
           C+N ++    ++        R + +IA      E   D F +QG   +  LYYK W+H G
Sbjct: 608 CINDLIEEHNKQHGAGLKPLRADCLIARAVTVLEKLIDRFQDQGPDGVLPLYYKYWVHGG 667

Query: 307 QRVIVQEKNEDQVVENVVTIQGLTSSGYLLAIGDDNQMCELHPDGNSLDFFKGLIRRKLQ 366
           Q+V +      Q      +I GL  SG+L    +D  +  +HPDGNS D  + LI  K Q
Sbjct: 668 QQVRLGSTEGPQ-----ASIVGLDDSGFLQVHQEDGGVVTVHPDGNSFDMLRNLIVPKRQ 722
Post-translational modification of specific protein by attachment of biotin. Acts on various carboxylases such as acetyl-CoA-carboxylase, pyruvate carboxylase, propionyl CoA carboxylase, and 3-methylcrotonyl CoA carboxylase.
Mus musculus (taxid: 10090)
EC: 6EC: .EC: 3EC: .EC: 4EC: .EC: 1EC: 5
>sp|P50747|BPL1_HUMAN Biotin--protein ligase OS=Homo sapiens GN=HLCS PE=1 SV=1 Back     alignment and function description
>sp|O14353|BPL1_SCHPO Biotin--protein ligase OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=bpl1 PE=3 SV=1 Back     alignment and function description
>sp|P48445|BPL1_YEAST Biotin--protein ligase OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=BPL1 PE=1 SV=1 Back     alignment and function description
>sp|P46363|BIRA_HAEIN Bifunctional protein BirA OS=Haemophilus influenzae (strain ATCC 51907 / DSM 11121 / KW20 / Rd) GN=birA PE=3 SV=1 Back     alignment and function description
>sp|E0U174|BIRA_BACPZ Bifunctional protein BirA OS=Bacillus subtilis subsp. spizizenii (strain ATCC 23059 / NRRL B-14472 / W23) GN=birA PE=3 SV=1 Back     alignment and function description
>sp|P29906|BIRA_PARDE Biotin--[acetyl-CoA-carboxylase] synthetase OS=Paracoccus denitrificans GN=birA PE=3 SV=1 Back     alignment and function description
>sp|P0CI75|BIRA_BACSU Bifunctional protein BirA OS=Bacillus subtilis (strain 168) GN=birA PE=1 SV=1 Back     alignment and function description
>sp|P06709|BIRA_ECOLI Bifunctional protein BirA OS=Escherichia coli (strain K12) GN=birA PE=1 SV=1 Back     alignment and function description
>sp|Q5F5C8|BICOA_NEIG1 Bifunctional enzyme BirA/CoaX OS=Neisseria gonorrhoeae (strain ATCC 700825 / FA 1090) GN=birA/coaX PE=3 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query366
357461633361 Holocarboxylase synthetase hcs2 [Medicag 0.950 0.963 0.727 1e-152
224063140333 predicted protein [Populus trichocarpa] 0.887 0.975 0.777 1e-150
302141869416 unnamed protein product [Vitis vinifera] 0.896 0.788 0.769 1e-148
225459465327 PREDICTED: biotin--protein ligase [Vitis 0.887 0.993 0.770 1e-148
356509454361 PREDICTED: biotin--protein ligase-like [ 0.937 0.950 0.709 1e-146
224084846331 predicted protein [Populus trichocarpa] 0.887 0.981 0.749 1e-146
356515850361 PREDICTED: biotin--protein ligase-like [ 0.937 0.950 0.709 1e-145
19698365367 holocarboxylase synthetase 1 [Arabidopsi 0.931 0.929 0.681 1e-143
449465773328 PREDICTED: biotin--protein ligase-like [ 0.885 0.987 0.721 1e-142
297821989365 holocarboxylase synthetase 1 [Arabidopsi 0.931 0.934 0.686 1e-142
>gi|357461633|ref|XP_003601098.1| Holocarboxylase synthetase hcs2 [Medicago truncatula] gi|355490146|gb|AES71349.1| Holocarboxylase synthetase hcs2 [Medicago truncatula] Back     alignment and taxonomy information
 Score =  543 bits (1400), Expect = e-152,   Method: Compositional matrix adjust.
 Identities = 259/356 (72%), Positives = 300/356 (84%), Gaps = 8/356 (2%)

Query: 18  SSPSIRSLVSANTKP---FRLSASSAAMDSNSSC-MLVLSGKSLAENEIAESLKSNSTLK 73
           +S S  SL+ A T+    + LS  +    S   C +LVL GKSLAENE A ++K+N+TLK
Sbjct: 5   NSASTASLLLATTRRVYNYHLSTYTLMASSAVDCSLLVLCGKSLAENETAIAIKTNNTLK 64

Query: 74  LPDNSEVSIHLQSE----IVKQESFDVELFMNSLATNRFGRLLIWSPRLPSTHDVVSHNF 129
           LPD  E+SI L SE    +++++SF    FMNSL+TN+FGRLLIWSP L STHDVVSHNF
Sbjct: 65  LPDKKELSIILHSEFNKSVIQRQSFQFSSFMNSLSTNQFGRLLIWSPELTSTHDVVSHNF 124

Query: 130 CELPVGAVCVADVQFKGRGRSKNAWESPKGCLMFSFTIQMEDGRVVPLLQYVASLALTEA 189
           CELPVG VCV D+Q KGRGRSKNAWESP GCLMFSFT+QMEDGR+VPL+QYV SLA+TEA
Sbjct: 125 CELPVGTVCVGDIQNKGRGRSKNAWESPLGCLMFSFTLQMEDGRIVPLVQYVVSLAITEA 184

Query: 190 INYVCSRDGLPCLDIKIKWPNDLYLNGIKVGGILCTSTYRTKKFNVSIGIGLNVNNEEPT 249
           I  +C ++GLPC+D+KIKWPNDLYLNG KVGGILCTSTYR+KKFN+S GIGLNVNNE+PT
Sbjct: 185 IKDICDKNGLPCVDVKIKWPNDLYLNGFKVGGILCTSTYRSKKFNISAGIGLNVNNEKPT 244

Query: 250 TCLNAVLRKLSDSTYQFRREDVIAAFFNKFETFYDTFINQGFQTLEELYYKTWLHSGQRV 309
           T LN VLR+LS   YQF+REDV+AAFFNKFE F+D F+NQGFQTLEELYYKTWLHSGQRV
Sbjct: 245 TSLNTVLRELSVGAYQFQREDVLAAFFNKFEKFFDLFLNQGFQTLEELYYKTWLHSGQRV 304

Query: 310 IVQEKNEDQVVENVVTIQGLTSSGYLLAIGDDNQMCELHPDGNSLDFFKGLIRRKL 365
           IVQEKNE++VVE+ VTIQGLTSSGYLLA+GDDNQMCELHPDGNS DFFKGL+RRKL
Sbjct: 305 IVQEKNEEKVVEHAVTIQGLTSSGYLLAVGDDNQMCELHPDGNSFDFFKGLVRRKL 360

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|224063140|ref|XP_002301010.1| predicted protein [Populus trichocarpa] gi|222842736|gb|EEE80283.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|302141869|emb|CBI19072.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
>gi|225459465|ref|XP_002285834.1| PREDICTED: biotin--protein ligase [Vitis vinifera] Back     alignment and taxonomy information
>gi|356509454|ref|XP_003523464.1| PREDICTED: biotin--protein ligase-like [Glycine max] Back     alignment and taxonomy information
>gi|224084846|ref|XP_002307419.1| predicted protein [Populus trichocarpa] gi|222856868|gb|EEE94415.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|356515850|ref|XP_003526610.1| PREDICTED: biotin--protein ligase-like [Glycine max] Back     alignment and taxonomy information
>gi|19698365|gb|AAL93108.1|AF414937_1 holocarboxylase synthetase 1 [Arabidopsis thaliana] Back     alignment and taxonomy information
>gi|449465773|ref|XP_004150602.1| PREDICTED: biotin--protein ligase-like [Cucumis sativus] Back     alignment and taxonomy information
>gi|297821989|ref|XP_002878877.1| holocarboxylase synthetase 1 [Arabidopsis lyrata subsp. lyrata] gi|297324716|gb|EFH55136.1| holocarboxylase synthetase 1 [Arabidopsis lyrata subsp. lyrata] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query366
TAIR|locus:2050291367 HCS1 "holocarboxylase synthase 0.868 0.866 0.702 4.2e-127
TAIR|locus:2029642329 HCS2 "holocarboxylase syntheta 0.868 0.966 0.705 2.6e-125
DICTYBASE|DDB_G0288791375 hlcs1 "biotin--[acetyl-CoA-car 0.816 0.797 0.375 8.8e-47
UNIPROTKB|F1MJL3732 HLCS "Uncharacterized protein" 0.767 0.383 0.333 2.5e-40
UNIPROTKB|E2RDP8724 HLCS "Uncharacterized protein" 0.729 0.368 0.328 6.4e-39
DICTYBASE|DDB_G0288789375 hlcs2 "biotin--[acetyl-CoA-car 0.726 0.709 0.336 3.9e-37
MGI|MGI:894646722 Hlcs "holocarboxylase syntheta 0.767 0.389 0.313 4.6e-37
WB|WBGene000002591215 bpl-1 [Caenorhabditis elegans 0.803 0.241 0.327 4.8e-36
RGD|1565360723 Hlcs "holocarboxylase syntheta 0.754 0.381 0.315 5.7e-36
UNIPROTKB|E1C4U9712 HLCS "Uncharacterized protein" 0.816 0.419 0.313 1.2e-35
TAIR|locus:2050291 HCS1 "holocarboxylase synthase 1" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 1248 (444.4 bits), Expect = 4.2e-127, P = 4.2e-127
 Identities = 227/323 (70%), Positives = 282/323 (87%)

Query:    48 CMLVLSGKSLAENEIAESLKSNSTLKLPDNSEVSIHLQSE---IVKQE--SFDVELFMNS 102
             C LVL GKS  E E+A+ LK+ ++LKLPDN++VS+ L+SE   +VK +  SF++ LFMNS
Sbjct:    45 CSLVLCGKSSVETEVAKGLKNKNSLKLPDNTKVSLILESEAKNLVKDDDNSFNLSLFMNS 104

Query:   103 LATNRFGRLLIWSPRLPSTHDVVSHNFCELPVGAVCVADVQFKGRGRSKNAWESPKGCLM 162
             + T+RFGR LIWSPRL STHDVVSHNF ELPVG+VCV D+QFKGRGR+KN WESPKGCLM
Sbjct:   105 IITHRFGRFLIWSPRLSSTHDVVSHNFSELPVGSVCVTDIQFKGRGRTKNVWESPKGCLM 164

Query:   163 FSFTIQMEDGRVVPLLQYVASLALTEAINYVCSRDGLPCLDIKIKWPNDLYLNGIKVGGI 222
             +SFT++MEDGRVVPL+QYV SLA+TEA+  VC + GLP +D+KIKWPNDLY+NG+KVGGI
Sbjct:   165 YSFTLEMEDGRVVPLIQYVVSLAVTEAVKDVCDKKGLPYIDVKIKWPNDLYVNGLKVGGI 224

Query:   223 LCTSTYRTKKFNVSIGIGLNVNNEEPTTCLNAVLRKLSDSTYQFRREDVIAAFFNKFETF 282
             LCTSTYR+KKFNVS+G+GLNV+N +PTTCLNAVL+ ++  +   +RE+++ AFF+KFE F
Sbjct:   225 LCTSTYRSKKFNVSVGVGLNVDNGQPTTCLNAVLKGMAPESNLLKREEILGAFFHKFEKF 284

Query:   283 YDTFINQGFQTLEELYYKTWLHSGQRVIVQEKNEDQVVENVVTIQGLTSSGYLLAIGDDN 342
             +D F++QGF++LEELYY+TWLHS QRVIV++K EDQVV+NVVTIQGLTSSGYLLA+GDDN
Sbjct:   285 FDLFMDQGFKSLEELYYRTWLHSEQRVIVEDKVEDQVVQNVVTIQGLTSSGYLLAVGDDN 344

Query:   343 QMCELHPDGNSLDFFKGLIRRKL 365
             QM ELHPDGNS DFFKGL+RRK+
Sbjct:   345 QMYELHPDGNSFDFFKGLVRRKI 367
GO:0003824 "catalytic activity" evidence=IEA;ISS
GO:0004077 "biotin-[acetyl-CoA-carboxylase
GO:0005576 "extracellular region" evidence=ISM
GO:0006464 "cellular protein modification process" evidence=IEA;ISS
GO:0005829 "cytosol" evidence=IDA
GO:0009507 "chloroplast" evidence=IDA
GO:0009536 "plastid" evidence=IDA
GO:0015979 "photosynthesis" evidence=RCA
GO:0045333 "cellular respiration" evidence=RCA
GO:0004078 "biotin-[methylcrotonoyl-CoA-carboxylase
GO:0042966 "biotin carboxyl carrier protein biosynthetic process" evidence=IDA
TAIR|locus:2029642 HCS2 "holocarboxylase synthetase 2" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
DICTYBASE|DDB_G0288791 hlcs1 "biotin--[acetyl-CoA-carboxylase] ligase 1" [Dictyostelium discoideum (taxid:44689)] Back     alignment and assigned GO terms
UNIPROTKB|F1MJL3 HLCS "Uncharacterized protein" [Bos taurus (taxid:9913)] Back     alignment and assigned GO terms
UNIPROTKB|E2RDP8 HLCS "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)] Back     alignment and assigned GO terms
DICTYBASE|DDB_G0288789 hlcs2 "biotin--[acetyl-CoA-carboxylase] ligase 2" [Dictyostelium discoideum (taxid:44689)] Back     alignment and assigned GO terms
MGI|MGI:894646 Hlcs "holocarboxylase synthetase (biotin- [propriony-Coenzyme A-carboxylase (ATP-hydrolysing)] ligase)" [Mus musculus (taxid:10090)] Back     alignment and assigned GO terms
WB|WBGene00000259 bpl-1 [Caenorhabditis elegans (taxid:6239)] Back     alignment and assigned GO terms
RGD|1565360 Hlcs "holocarboxylase synthetase (biotin-(proprionyl-CoA-carboxylase (ATP-hydrolysing)) ligase)" [Rattus norvegicus (taxid:10116)] Back     alignment and assigned GO terms
UNIPROTKB|E1C4U9 HLCS "Uncharacterized protein" [Gallus gallus (taxid:9031)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

Prediction LevelEC numberConfidence of Prediction
3rd Layer2.3.1.181LOW CONFIDENCE prediction!
3rd Layer2.3.1LOW CONFIDENCE prediction!
3rd Layer6.3.4.9LOW CONFIDENCE prediction!
3rd Layer6.3.40.691
3rd Layer6.3.4.15LOW CONFIDENCE prediction!
3rd Layer6.3.4.10LOW CONFIDENCE prediction!
3rd Layer6.3.4.11LOW CONFIDENCE prediction!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Fail to connect to STRING server

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query366
COG0340238 COG0340, BirA, Biotin-(acetyl-CoA carboxylase) lig 1e-41
TIGR00121237 TIGR00121, birA_ligase, birA, biotin-[acetyl-CoA-c 1e-28
PRK11886319 PRK11886, PRK11886, bifunctional biotin--[acetyl-C 1e-23
pfam03099124 pfam03099, BPL_LplA_LipB, Biotin/lipoate A/B prote 3e-22
PRK08330236 PRK08330, PRK08330, biotin--protein ligase; Provis 7e-21
PRK13325 592 PRK13325, PRK13325, bifunctional biotin--[acetyl-C 4e-12
PRK08477211 PRK08477, PRK08477, biotin--protein ligase; Provis 5e-11
PTZ00276245 PTZ00276, PTZ00276, biotin/lipoate protein ligase; 1e-10
PRK06955300 PRK06955, PRK06955, biotin--protein ligase; Provis 3e-10
PRK05935190 PRK05935, PRK05935, biotin--protein ligase; Provis 3e-08
PTZ00275285 PTZ00275, PTZ00275, biotin-acetyl-CoA-carboxylase 6e-07
>gnl|CDD|223417 COG0340, BirA, Biotin-(acetyl-CoA carboxylase) ligase [Coenzyme metabolism] Back     alignment and domain information 
 Score =  145 bits (369), Expect = 1e-41
 Identities = 68/247 (27%), Positives = 106/247 (42%), Gaps = 15/247 (6%)

Query: 116 PRLPSTHDVVSHNFCEL-PVGAVCVADVQFKGRGRSKNAWESPKGCLMFSFTIQMEDGRV 174
             + ST+           P G V VA+ Q  GRGR    W SPKG  ++   +   D   
Sbjct: 2   DEIDSTNTEAKERAASGAPEGTVVVAEEQTAGRGRRGRKWSSPKGGGLYMSLLLRPDLPP 61

Query: 175 --VPLLQYVASLALTEAINYVCSRDGLPCLDIKIKWPNDLYLNGIKVGGILCTSTYRTK- 231
             +P L  VA LA+ EA+            D++IKWPND+ LNG K+ GIL  +      
Sbjct: 62  AELPSLSLVAGLAVAEALRKFGI-------DVRIKWPNDVLLNGKKLAGILVEAVGDENG 114

Query: 232 KFNVSIGIGLNVNNEEPTTC-LNAVLRKLSDSTYQFRREDVIAAFFNKFETFYDTFINQG 290
              V +GIG+NVNN  P    +      L +   +  RE+++A    + E +   F+ +G
Sbjct: 115 LLAVVVGIGINVNNPPPDFEDIGQPATSLQEEGEEIDREELLAKLLKELEKYLRQFLREG 174

Query: 291 FQTLEELYYKTWLHSGQRVIVQEKNEDQVVENVVTIQGLTSSGYLLAIGDDNQMCELHPD 350
           F  +   +    L  G+ V +       +   +   +G+   G LL   DD ++  ++  
Sbjct: 175 FAPILARWRARSLSLGKEVRLTLGG-GVIFGGIA--KGIDEDGALLLETDDGEVQTIYSG 231

Query: 351 GNSLDFF 357
             SL   
Sbjct: 232 EVSLRRA 238

Length = 238
>gnl|CDD|232834 TIGR00121, birA_ligase, birA, biotin-[acetyl-CoA-carboxylase] ligase region Back     alignment and domain information
>gnl|CDD|237010 PRK11886, PRK11886, bifunctional biotin--[acetyl-CoA-carboxylase] synthetase/biotin operon repressor; Provisional Back     alignment and domain information
>gnl|CDD|217367 pfam03099, BPL_LplA_LipB, Biotin/lipoate A/B protein ligase family Back     alignment and domain information
>gnl|CDD|169384 PRK08330, PRK08330, biotin--protein ligase; Provisional Back     alignment and domain information
>gnl|CDD|183976 PRK13325, PRK13325, bifunctional biotin--[acetyl-CoA-carboxylase] ligase/pantothenate kinase; Reviewed Back     alignment and domain information
>gnl|CDD|236273 PRK08477, PRK08477, biotin--protein ligase; Provisional Back     alignment and domain information
>gnl|CDD|140302 PTZ00276, PTZ00276, biotin/lipoate protein ligase; Provisional Back     alignment and domain information
>gnl|CDD|235896 PRK06955, PRK06955, biotin--protein ligase; Provisional Back     alignment and domain information
>gnl|CDD|235649 PRK05935, PRK05935, biotin--protein ligase; Provisional Back     alignment and domain information
>gnl|CDD|185536 PTZ00275, PTZ00275, biotin-acetyl-CoA-carboxylase ligase; Provisional Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 366
KOG1536649 consensus Biotin holocarboxylase synthetase/biotin 100.0
PRK06955300 biotin--protein ligase; Provisional 100.0
TIGR00121237 birA_ligase birA, biotin-[acetyl-CoA-carboxylase] 100.0
COG0340238 BirA Biotin-(acetyl-CoA carboxylase) ligase [Coenz 100.0
PRK08330236 biotin--protein ligase; Provisional 100.0
PRK11886319 bifunctional biotin--[acetyl-CoA-carboxylase] synt 100.0
PTZ00275285 biotin-acetyl-CoA-carboxylase ligase; Provisional 100.0
PRK13325 592 bifunctional biotin--[acetyl-CoA-carboxylase] liga 100.0
PTZ00276245 biotin/lipoate protein ligase; Provisional 100.0
PRK08477211 biotin--protein ligase; Provisional 100.0
PRK05935190 biotin--protein ligase; Provisional 100.0
PF03099125 BPL_LplA_LipB: Biotin/lipoate A/B protein ligase f 99.87
PF0223748 BPL_C: Biotin protein ligase C terminal domain; In 98.52
PRK14348221 lipoate-protein ligase B; Provisional 93.85
TIGR00545324 lipoyltrans lipoyltransferase and lipoate-protein 92.12
PRK14342213 lipoate-protein ligase B; Provisional 89.97
TIGR00214184 lipB lipoate-protein ligase B. Involved in lipoate 89.06
COG0095248 LplA Lipoate-protein ligase A [Coenzyme metabolism 88.25
PRK14345234 lipoate-protein ligase B; Provisional 86.31
PRK14344223 lipoate-protein ligase B; Provisional 85.82
PRK03822338 lplA lipoate-protein ligase A; Provisional 83.84
PRK14343235 lipoate-protein ligase B; Provisional 83.01
COG0321221 LipB Lipoate-protein ligase B [Coenzyme metabolism 81.8
PRK14349220 lipoate-protein ligase B; Provisional 80.48
>KOG1536 consensus Biotin holocarboxylase synthetase/biotin-protein ligase [Coenzyme transport and metabolism] Back     alignment and domain information 
Probab=100.00  E-value=1.1e-62  Score=491.61  Aligned_cols=333  Identities=50%  Similarity=0.865  Sum_probs=289.5

Q ss_pred             hhhhccccccc---ccccccc--cCccccceEEEecCchhHHHH-------HHhhhcCCC-cCCCCCC-ceeEEeccccc
Q 017780           24 SLVSANTKPFR---LSASSAA--MDSNSSCMLVLSGKSLAENEI-------AESLKSNST-LKLPDNS-EVSIHLQSEIV   89 (366)
Q Consensus        24 ~~~~~~~~~~~---~~~~~~~--~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~-~~~~~~~-~~~~~~~~~~~   89 (366)
                      .++..+.+++.   ..+.++.  .+....|++++|+.++++.|+       ++.+.++++ ++.||+. ++.|.+.+|..
T Consensus       281 ~~~~~n~~~~~r~~~k~~a~~l~~d~k~~~sl~~~~~~s~~tei~d~~~~~~~~ld~s~~~~k~~D~s~k~~i~~~~E~d  360 (649)
T KOG1536|consen  281 ILLFRNLKPLKRLSEKLLASALECDSKASCSLVLCGFSSAETEIKDTNKEFLKGLDNSNSKLKSPDNSVKFVIILGSEED  360 (649)
T ss_pred             hhhhcccchHHHHHHHHHHhhhccccccCceeEEeeccccchhhhhhHHHHHHhhhhhhhhccCCCcceeEEEEeccccc
Confidence            46677766654   3334443  334689999999999999998       888877766 9999998 99999988863


Q ss_pred             -----cCCCCCHHHHHhhcccccCCceEEEcccCCCHHHHHHHhccCCC--CceEEEeCcccCCccCCCCeeecCCCCce
Q 017780           90 -----KQESFDVELFMNSLATNRFGRLLIWSPRLPSTHDVVSHNFCELP--VGAVCVADVQFKGRGRSKNAWESPKGCLM  162 (366)
Q Consensus        90 -----~~~~f~~~~~~~~L~t~~~g~~li~~~~v~STn~~a~~~~~~~~--~g~vviA~~QTaGRGR~GR~W~Sp~G~L~  162 (366)
                           ..+.||.+.|++.|.++++|+.++|.|.++||++++..+..++|  .|.+|+|..||+||||.||.|.||.|+++
T Consensus       361 i~~~~~s~nFdl~lY~k~i~tk~~G~~ll~a~V~tST~~ild~n~s~lpse~g~vvv~~~Q~sGRGRGgN~WlsP~G~~~  440 (649)
T KOG1536|consen  361 ILVADDSPNFDLELYFKSINTKRFGRVLLWAPVLTSTMDILDHNFSELPSEVGLVVVANIQTSGRGRGGNVWLSPKGCAM  440 (649)
T ss_pred             cccccCCCCcCHHHHHHHhhhhccCceEEEEeecchHHHHHhhhhhcCCcccceEEEEeEEeecccCCCCeeecCcceEe
Confidence                 46889999999999999999999999999999999998887777  79999999999999999999999999999


Q ss_pred             eeeeeeccCC----CCcchhHHHHHHHHHHHHHHhhhcCCCCCCCceeEecCcEEECC-EEEEEEeeeeeccCCcceEEE
Q 017780          163 FSFTIQMEDG----RVVPLLQYVASLALTEAINYVCSRDGLPCLDIKIKWPNDLYLNG-IKVGGILCTSTYRTKKFNVSI  237 (366)
Q Consensus       163 fSl~l~~~~~----~~~~~ls~~~glAV~~aL~~~~~~~G~~~~~v~IKWPNDI~v~g-kKlgGILiE~~~~~~~~~vvI  237 (366)
                      ||+.+.++..    ..+|.+++++.+|+.++++..   .|+|+++++||||||||+++ .|||||||.+.+.++.++++|
T Consensus       441 ~sf~ism~~ksr~~~~i~~~~~l~~~~~v~~~~~~---pGy~dIpvrIKWPNDlY~~~~lKvgGiLv~st~r~n~f~v~i  517 (649)
T KOG1536|consen  441 SSFTISMPLKSRVVPLIPFVQHLALVAVVEAVRYA---PGYPDIPVRIKWPNDLYVNGYLKVGGILVTSTYRSNKFNVSI  517 (649)
T ss_pred             EEEEEEeecccccccchHHHHHHHHHHHHHHHhcC---CCCCCCceeeecCccceeeeccccceEEEEeeecCceEEEEE
Confidence            9999987632    245555666666666666543   58999999999999999999 999999999999999999999


Q ss_pred             eeeccCCCCCCcchHHHHHHhhhcCCC----CCCHHHHHHHHHHHHHHHHHHHHhcChHHHHHHHHHHhhcCCCEEEEEE
Q 017780          238 GIGLNVNNEEPTTCLNAVLRKLSDSTY----QFRREDVIAAFFNKFETFYDTFINQGFQTLEELYYKTWLHSGQRVIVQE  313 (366)
Q Consensus       238 GIGINvn~~~p~t~l~~~l~~~~~~~~----~~~r~~Ll~~ll~~~~~~~~~~~~~gf~~l~~~y~~~~~~~Gq~V~v~~  313 (366)
                      ||||||.+..|++|||+.+.++++...    .+.+|+|++.+++.|+.++..|+++||+.++..|+++|+|.+|+|.+.+
T Consensus       518 GCGiNVtN~~PT~cLN~ll~~~n~e~~~~~l~~k~EkLiA~~~n~fe~~~k~f~d~G~~silp~YYeyWLHS~Q~V~L~d  597 (649)
T KOG1536|consen  518 GCGINVTNDGPTTCLNDLLDEMNEERNLLHLAIKAEKLIAAVFNKFEKYFKLFMDQGPKSILPLYYEYWLHSNQRVILED  597 (649)
T ss_pred             eeeeEecCCCCceeHHHHHHhhchhhccccchhhHHHHHHHHHHHHHHHHHHHHhhCHHhHhHHHHHHHhccCcEEeccC
Confidence            999999999999999999888775432    3589999999999999999999999999999999999999999999988


Q ss_pred             CCccEEEeeeEEEEEECCCceEEEEeC------CCcEEEEcCCCeeEEeecCeecccc
Q 017780          314 KNEDQVVENVVTIQGLTSSGYLLAIGD------DNQMCELHPDGNSLDFFKGLIRRKL  365 (366)
Q Consensus       314 ~~~~~~~~~~G~i~GId~~G~Llv~~~------dG~~~~l~~dg~S~d~~~gli~~k~  365 (366)
                      .++.      .++.|+|+.|+|+++..      +++++++|||||+||||++||++|+
T Consensus       598 ~~e~------vii~~~dD~G~L~~~~~~~~~~~t~kv~~l~PDGNtFDmmknLI~~K~  649 (649)
T KOG1536|consen  598 KGEA------VIIGGTDDIGFLQVSGLLLAVGDTNKVYELHPDGNTFDMMKNLIRHKY  649 (649)
T ss_pred             CCcc------eEEeeeecccceeeehhcccCCCCCceEEEcCCCcHHHHHHHhhccCC
Confidence            7643      35788999999999854      4599999999999999999999996

>PRK06955 biotin--protein ligase; Provisional Back     alignment and domain information
>TIGR00121 birA_ligase birA, biotin-[acetyl-CoA-carboxylase] ligase region Back     alignment and domain information
>COG0340 BirA Biotin-(acetyl-CoA carboxylase) ligase [Coenzyme metabolism] Back     alignment and domain information
>PRK08330 biotin--protein ligase; Provisional Back     alignment and domain information
>PRK11886 bifunctional biotin--[acetyl-CoA-carboxylase] synthetase/biotin operon repressor; Provisional Back     alignment and domain information
>PTZ00275 biotin-acetyl-CoA-carboxylase ligase; Provisional Back     alignment and domain information
>PRK13325 bifunctional biotin--[acetyl-CoA-carboxylase] ligase/pantothenate kinase; Reviewed Back     alignment and domain information
>PTZ00276 biotin/lipoate protein ligase; Provisional Back     alignment and domain information
>PRK08477 biotin--protein ligase; Provisional Back     alignment and domain information
>PRK05935 biotin--protein ligase; Provisional Back     alignment and domain information
>PF03099 BPL_LplA_LipB: Biotin/lipoate A/B protein ligase family This entry is just a subset of the Pfam family; InterPro: IPR004143 This domain is found in biotin protein ligase, lipoate-protein ligase A and B Back     alignment and domain information
>PF02237 BPL_C: Biotin protein ligase C terminal domain; InterPro: IPR003142 This C-terminal domain has an SH3-like barrel fold, the function of which is unknown Back     alignment and domain information
>PRK14348 lipoate-protein ligase B; Provisional Back     alignment and domain information
>TIGR00545 lipoyltrans lipoyltransferase and lipoate-protein ligase Back     alignment and domain information
>PRK14342 lipoate-protein ligase B; Provisional Back     alignment and domain information
>TIGR00214 lipB lipoate-protein ligase B Back     alignment and domain information
>COG0095 LplA Lipoate-protein ligase A [Coenzyme metabolism] Back     alignment and domain information
>PRK14345 lipoate-protein ligase B; Provisional Back     alignment and domain information
>PRK14344 lipoate-protein ligase B; Provisional Back     alignment and domain information
>PRK03822 lplA lipoate-protein ligase A; Provisional Back     alignment and domain information
>PRK14343 lipoate-protein ligase B; Provisional Back     alignment and domain information
>COG0321 LipB Lipoate-protein ligase B [Coenzyme metabolism] Back     alignment and domain information
>PRK14349 lipoate-protein ligase B; Provisional Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query366
1wnl_A235 Crystal Structure Of Biotin-(Acetyl-Coa-Carboxylase 5e-14
2dve_A235 Crystal Structure Of Biotin Protein Ligase From Pyr 7e-14
1wpy_A235 Crystal Structure Of Biotin-(Acetyl-Coa-Carboxylase 8e-14
2djz_A235 Crystal Structure Of Biotin Protein Ligase From Pyr 2e-13
2deq_A235 Crystal Structure Of Biotin Protein Ligase From Pyr 3e-13
2dxu_A235 Crystal Structure Of Biotin Protein Ligase From Pyr 4e-13
2dxt_A235 Crystal Structure Of Biotin Protein Ligase From Pyr 5e-13
2e41_A235 Crystal Structure Of Biotin Protein Ligase From Pyr 2e-12
1hxd_A321 Crystal Structure Of E. Coli Biotin Repressor With 3e-12
2eay_A233 Crystal Structure Of Biotin Protein Ligase From Aqu 5e-12
3efs_A233 Biotin Protein Ligase From Aquifex Aeolicus In Comp 9e-11
3efr_A233 Biotin Protein Ligase R40g Mutant From Aquifex Aeol 9e-10
2ej9_A237 Crystal Structure Of Biotin Protein Ligase From Met 2e-08
4dq2_A328 Structure Of Staphylococcus Aureus Biotin Protein L 2e-06
3v7r_A329 Crystal Structure Of Staphylococcus Aureus Biotin P 2e-06
3v7c_A329 Cystal Structure Of Sabpl In Complex With Inhibitor 2e-06
3rir_A323 Crystal Strucrture Of Biotin Protein Ligase From S. 2e-06
3rux_A270 Crystal Structure Of Biotin-Protein Ligase Bira Fro 2e-04
3l1a_A266 Structural Ordering Of Disordered Ligand Binding Lo 2e-04
2cgh_A268 Crystal Structure Of Biotin Ligase From Mycobacteri 2e-04
>pdb|1WNL|A Chain A, Crystal Structure Of Biotin-(Acetyl-Coa-Carboxylase) Ligase From Pyrococcus Horikoshii Ot3 In Complex With Adp Length = 235 Back     alignment and structure 
Iteration: 1

 Score = 75.1 bits (183), Expect = 5e-14,   Method: Compositional matrix adjust.
 Identities = 48/153 (31%), Positives = 77/153 (50%), Gaps = 14/153 (9%)
Query: 100 MNSLATNRFGRLLIWSPRLPSTHDVVSHNFCELPVGAVCVADVQFKGRGRSKNAWESPKG 159
           M  L T+  GR +I+   + ST++    ++ E   G V VAD Q  G GR    WESP+G
Sbjct: 1   MLGLKTSIIGRRVIYFQEITSTNEFAKTSYLE--EGTVIVADKQTMGHGRLNRKWESPEG 58
Query: 160 CLMFSFTIQME-DGRVVPLLQYVASLALTEAINYVCSRDGLPCLDIKIKWPNDLYLNGIK 218
            L  S  +  +   + +P + ++ ++ + E +           +D +IKWPND+ +N  K
Sbjct: 59  GLWLSIVLSPKVPQKDLPKIVFLGAVGVVETLKEF-------SIDGRIKWPNDVLVNYKK 111
Query: 219 VGGILCTSTYRTKKFNVSIGIGLNVNNEEPTTC 251
           + G+L       K   + +GIGLNVNN+ P   
Sbjct: 112 IAGVLVEG----KGDKIVLGIGLNVNNKVPNGA 140
>pdb|2DVE|A Chain A, Crystal Structure Of Biotin Protein Ligase From Pyrococcus Horikoshii Ot3 In Complex With Biotinyl-5'-Amp, Mutation Arg51ala Length = 235 Back     alignment and structure
>pdb|1WPY|A Chain A, Crystal Structure Of Biotin-(Acetyl-Coa-Carboxylase) Ligase From Pyrococcus Horikoshii Ot3 In Complex With Biotin Length = 235 Back     alignment and structure
>pdb|2DJZ|A Chain A, Crystal Structure Of Biotin Protein Ligase From Pyrococcus Horikoshii Ot3 In Complex With Biotinyl-5'-amp, K111a Mutation Length = 235 Back     alignment and structure
>pdb|2DEQ|A Chain A, Crystal Structure Of Biotin Protein Ligase From Pyrococcus Horikoshii Ot3 In Complex With Biotinyl-5'-Amp, K111g Mutation Length = 235 Back     alignment and structure
>pdb|2DXU|A Chain A, Crystal Structure Of Biotin Protein Ligase From Pyrococcus Horikoshii Complexed With Biotinyl-5'-Amp, Mutation R48a Length = 235 Back     alignment and structure
>pdb|2DXT|A Chain A, Crystal Structure Of Biotin Protein Ligase From Pyrococcus Horikoshii Complexed With Atp And Biotin, Mutation D104a Length = 235 Back     alignment and structure
>pdb|2E41|A Chain A, Crystal Structure Of Biotin Protein Ligase From Pyrococcus Horikoshii Complexed With The Reaction Product Analog Biotinol-5'-Amp, Mutations R48a And K111a Length = 235 Back     alignment and structure
>pdb|1HXD|A Chain A, Crystal Structure Of E. Coli Biotin Repressor With Bound Biotin Length = 321 Back     alignment and structure
>pdb|2EAY|A Chain A, Crystal Structure Of Biotin Protein Ligase From Aquifex Aeolicus Length = 233 Back     alignment and structure
>pdb|3EFS|A Chain A, Biotin Protein Ligase From Aquifex Aeolicus In Complex With Biotin And Atp Length = 233 Back     alignment and structure
>pdb|3EFR|A Chain A, Biotin Protein Ligase R40g Mutant From Aquifex Aeolicus In Complex With Biotin Length = 233 Back     alignment and structure
>pdb|2EJ9|A Chain A, Crystal Structure Of Biotin Protein Ligase From Methanococcus Jannaschii Length = 237 Back     alignment and structure
>pdb|4DQ2|A Chain A, Structure Of Staphylococcus Aureus Biotin Protein Ligase In Complex With Biotinol-5'-Amp Length = 328 Back     alignment and structure
>pdb|3V7R|A Chain A, Crystal Structure Of Staphylococcus Aureus Biotin Protein Ligase In Complex With Inhibitor Length = 329 Back     alignment and structure
>pdb|3V7C|A Chain A, Cystal Structure Of Sabpl In Complex With Inhibitor Length = 329 Back     alignment and structure
>pdb|3RIR|A Chain A, Crystal Strucrture Of Biotin Protein Ligase From S. Aureus Length = 323 Back     alignment and structure
>pdb|3RUX|A Chain A, Crystal Structure Of Biotin-Protein Ligase Bira From Mycobacterium Tuberculosis In Complex With An Acylsulfamide Bisubstrate Inhibitor Length = 270 Back     alignment and structure
>pdb|3L1A|A Chain A, Structural Ordering Of Disordered Ligand Binding Loops Of Biotin Protein Ligase Into Active Conformations As A Consequence Of Dehydration Length = 266 Back     alignment and structure
>pdb|2CGH|A Chain A, Crystal Structure Of Biotin Ligase From Mycobacterium Tuberculosis Length = 268 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query366
2dxu_A235 Biotin--[acetyl-COA-carboxylase] ligase; biotin bi 6e-46
3rkx_A323 Biotin-[acetyl-COA-carboxylase] ligase; biotin pro 4e-43
2eay_A233 Biotin [acetyl-COA-carboxylase] ligase; biotin bio 8e-43
1bia_A321 BIRA bifunctional protein; transcription regulatio 7e-41
2ej9_A237 Putative biotin ligase; biotin biosynthesis, monom 2e-38
3rux_A270 BIRA bifunctional protein; biotin-protein ligase, 4e-37
3bfm_A235 Biotin protein ligase-like protein of unknown FUN; 1e-28
>2dxu_A Biotin--[acetyl-COA-carboxylase] ligase; biotin biosynthesis, dimer, X-RAY diffraction, structural genomics, NPPSFA; HET: BT5; 1.28A {Pyrococcus horikoshii} PDB: 2dzc_A 2ejg_A* 2e3y_A* 2e41_A* 2e64_A 2ejf_A* 2zgw_A* 1wqw_A* 1wpy_A* 1wq7_A 1wnl_A* 1x01_A* 2dkg_A* 2dth_A* 2dti_A* 2dto_A* 2fyk_A* 2djz_A* 2hni_A 2e10_A ... Length = 235 Back     alignment and structure
 Score =  156 bits (396), Expect = 6e-46
 Identities = 59/240 (24%), Positives = 97/240 (40%), Gaps = 29/240 (12%)

Query: 100 MNSLATNRFGRLLIWSPRLPSTHDVVSHNFCELPVGAVCVADVQFKGRGRSKNAWESPKG 159
           M  L T+  GR +I+   + ST++    +   L  G V VAD Q  G G     WESP+G
Sbjct: 1   MLGLKTSIIGRRVIYFQEITSTNEFAKTS--YLEEGTVIVADKQTMGHGALNRKWESPEG 58

Query: 160 CLMFSFTIQMEDG-RVVPLLQYVASLALTEAINYVCSRDGLPCLDIKIKWPNDLYLNGIK 218
            L  S  +  +   + +P + ++ ++ + E +           +D +IKWPND+ +N  K
Sbjct: 59  GLWLSIVLSPKVPQKDLPKIVFLGAVGVVETLKEFS-------IDGRIKWPNDVLVNYKK 111

Query: 219 VGGILCTSTYRTKKFNVSIGIGLNVNNE--EPTTCLNAVLRKLSDSTYQFRREDVIAAFF 276
           + G+L           + +GIGLNVNN+     T +   L        +     V  +  
Sbjct: 112 IAGVLVEGKGD----KIVLGIGLNVNNKVPNGATSMKLELGS------EVPLLSVFRSLI 161

Query: 277 NKFETFYDTFINQGFQTLEELYYKTWLHSGQRVIVQEKNEDQVVENVVTIQGLTSSGYLL 336
              +  Y  F+      L  +     L  G RV +     D   E     + +   G L+
Sbjct: 162 TNLDRLYLNFLKNPMDILNLVRDNMIL--GVRVKIL---GDGSFE--GIAEDIDDFGRLI 214
>3rkx_A Biotin-[acetyl-COA-carboxylase] ligase; biotin protein ligase, 3 domains, enzyme DNA binding, biotin coupling domains; 2.10A {Staphylococcus aureus} PDB: 3rir_A* 3rkw_A 3rky_A* 3v7c_A* 3v7s_A* 4dq2_A* Length = 323 Back     alignment and structure
>2eay_A Biotin [acetyl-COA-carboxylase] ligase; biotin biosynthesis, dimer, X-RAY diffraction, structural genomics, NPPSFA; 1.95A {Aquifex aeolicus} PDB: 3efs_A* 3fjp_A 3efr_A* Length = 233 Back     alignment and structure
>1bia_A BIRA bifunctional protein; transcription regulation; 2.30A {Escherichia coli} SCOP: a.4.5.1 b.34.1.1 d.104.1.2 PDB: 1bib_A* 1hxd_A* 2ewn_A* Length = 321 Back     alignment and structure
>2ej9_A Putative biotin ligase; biotin biosynthesis, monomer, X-RAY diffraction, structural genomics, NPPSFA; HET: BTN; 2.00A {Methanocaldococcus jannaschii} Length = 237 Back     alignment and structure
>3rux_A BIRA bifunctional protein; biotin-protein ligase, ligase-ligase inhibitor complex; HET: BS5; 1.70A {Mycobacterium tuberculosis} PDB: 3l1a_A 3l2z_A 2cgh_A Length = 270 Back     alignment and structure
>3bfm_A Biotin protein ligase-like protein of unknown FUN; structural genomics, joint center for structural genomics, J protein structure initiative; HET: 2PE; 1.70A {Silicibacter SP} Length = 235 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query366
3rkx_A323 Biotin-[acetyl-COA-carboxylase] ligase; biotin pro 100.0
2dxu_A235 Biotin--[acetyl-COA-carboxylase] ligase; biotin bi 100.0
2eay_A233 Biotin [acetyl-COA-carboxylase] ligase; biotin bio 100.0
3rux_A270 BIRA bifunctional protein; biotin-protein ligase, 100.0
2ej9_A237 Putative biotin ligase; biotin biosynthesis, monom 100.0
1bia_A321 BIRA bifunctional protein; transcription regulatio 100.0
3bfm_A235 Biotin protein ligase-like protein of unknown FUN; 100.0
2qhs_A237 Lipoyltransferase; globular protein; HET: OCA; 1.5 98.2
1w66_A232 Lipoyltransferase; lipoate-protein ligase B, lipoi 97.14
2p5i_A288 BH3822 protein; PFAM03099, structural genomics, PS 96.44
2p0l_A288 Lipoate-protein ligase A; PFAM, lopoate-protein li 96.06
2c8m_A262 Lipoate-protein ligase A; lipoylation; HET: LPA; 1 95.95
1vqz_A341 Lipoate-protein ligase, putative; class II AARS an 95.66
2e5a_A347 Lipoyltransferase 1; lipoyl-AMP, ligase; HET: LAQ; 94.94
3a7r_A337 Lipoate-protein ligase A; adenylate-forming enzyme 94.79
>3rkx_A Biotin-[acetyl-COA-carboxylase] ligase; biotin protein ligase, 3 domains, enzyme DNA binding, biotin coupling domains; 2.10A {Staphylococcus aureus} PDB: 3rir_A* 3rkw_A 3rky_A* 3v7c_A* 3v7s_A* 3v8j_A 3v7r_A 3v8k_A* 3v8l_A* 4dq2_A* Back     alignment and structure
Probab=100.00  E-value=1.2e-59  Score=459.61  Aligned_cols=252  Identities=18%  Similarity=0.286  Sum_probs=207.2

Q ss_pred             CCCCCHHHHHhhcccccCCceEEEcccCCCHHHHHHHhc-cCCCCceEEEeCcccCCccCCCCeeecCCC-Cceeeeeee
Q 017780           91 QESFDVELFMNSLATNRFGRLLIWSPRLPSTHDVVSHNF-CELPVGAVCVADVQFKGRGRSKNAWESPKG-CLMFSFTIQ  168 (366)
Q Consensus        91 ~~~f~~~~~~~~L~t~~~g~~li~~~~v~STn~~a~~~~-~~~~~g~vviA~~QTaGRGR~GR~W~Sp~G-~L~fSl~l~  168 (366)
                      ++.++++.+...|+|..+|+.++|+++++|||+++ +.+ .+.++|+||+|++||+||||+||+|+||+| +||||++++
T Consensus        64 ~~~l~~~~i~~~l~~~~~g~~i~~~~~~~STn~~a-~~~~~g~~~g~vv~A~~QTaGRGR~GR~W~Sp~G~~L~~S~~l~  142 (323)
T 3rkx_A           64 PDIWYQGIIDQYTKSSALFDFSEVYDSIDSTQLAA-KKSLVGNQSSFFILSDEQTKGRGRFNRHWSSSKGQGLWMSVVLR  142 (323)
T ss_dssp             CSSCCHHHHHHHHHTCSSCSEEEEEEEESCHHHHH-HHHTTTCCCCEEEEEEEEC------------CTTCEEEEEEEEC
T ss_pred             cccCCHHHHHhhcccccCCceEEEEcCCCCHHHHH-HHHhcCCCCCEEEEECcccCCCCCCCCeeeCCCCCCEEEEEEec
Confidence            47799999999999999999999999999999999 654 357899999999999999999999999999 899999998


Q ss_pred             cc-CCCCcchhHHHHHHHHHHHHHHhhhcCCCCCCCceeEecCcEEECCEEEEEEeeeeeccCCc-ceEEEeeeccCCCC
Q 017780          169 ME-DGRVVPLLQYVASLALTEAINYVCSRDGLPCLDIKIKWPNDLYLNGIKVGGILCTSTYRTKK-FNVSIGIGLNVNNE  246 (366)
Q Consensus       169 ~~-~~~~~~~ls~~~glAV~~aL~~~~~~~G~~~~~v~IKWPNDI~v~gkKlgGILiE~~~~~~~-~~vvIGIGINvn~~  246 (366)
                      |+ ++..++.+++++|+||++||++++      +.+++||||||||++||||||||+|+..+.+. .++|||||||||+.
T Consensus       143 p~~~~~~~~~lsl~~avAv~~al~~~~------~~~~~iKWPNDI~~~gkKl~GIL~E~~~~~~~~~~vViGIGiNv~~~  216 (323)
T 3rkx_A          143 PNVAFSMISKFNLFIALGIRDAIQHFS------QDEVKVKWPNDIYIDNGKVCGFLTEMVANNDGIEAIICGIGINLTQQ  216 (323)
T ss_dssp             CCCCTTSGGGHHHHHHHHHHHHHHTTC------SSCEEEETTTEEEETTEEEEEEEEEEEECSSSEEEEEEEEEEECSCC
T ss_pred             CCCCHHHHHHHHHHHHHHHHHHHHHhc------CCceEEeCCCeEEECCEEEEEEEeEeeeCCCCCCEEEEEEEEEecCC
Confidence            86 456789999999999999999874      35799999999999999999999999887665 47999999999983


Q ss_pred             ---CCcchHH-HHHHhhhcCCCCCCHHHHHHHHHHHHHHHHHHHHhcChHHHHHHHHHHhhcCCCEEEEEECCccEEEee
Q 017780          247 ---EPTTCLN-AVLRKLSDSTYQFRREDVIAAFFNKFETFYDTFINQGFQTLEELYYKTWLHSGQRVIVQEKNEDQVVEN  322 (366)
Q Consensus       247 ---~p~t~l~-~~l~~~~~~~~~~~r~~Ll~~ll~~~~~~~~~~~~~gf~~l~~~y~~~~~~~Gq~V~v~~~~~~~~~~~  322 (366)
                         .|.. +. .+.+.....+..++|++|++.++++|+.+|..|.+.||.++.++|++++++.|++|++..+++.  ++ 
T Consensus       217 ~~~~p~~-l~~~atsL~~~~g~~~~r~~ll~~ll~~l~~~~~~~~~~g~~~~~~~~~~~~~~~g~~V~v~~~~~~--~~-  292 (323)
T 3rkx_A          217 LENFDES-IRHRATSIQLHDKNKLDRYQFLERLLQEIEKRYNQFLTLPFSEIREEYNAASNIWNRTLLFTENDKQ--FK-  292 (323)
T ss_dssp             GGGSCTT-TGGGBCCSGGGCSSCCCHHHHHHHHHHHHHHHHHHHHHSCGGGTHHHHHHTBSCSSSCEEEECC-CE--EE-
T ss_pred             cccCCcc-cCcceeeHhhhhCCCCCHHHHHHHHHHHHHHHHHHHHhcChHHHHHHHHHHHhhcCCEEEEEECCeE--EE-
Confidence               2321 11 1111111246689999999999999999999999999999999999999999999999876543  33 


Q ss_pred             eEEEEEECCCceEEEEeCCCcEEEEcCCCeeE
Q 017780          323 VVTIQGLTSSGYLLAIGDDNQMCELHPDGNSL  354 (366)
Q Consensus       323 ~G~i~GId~~G~Llv~~~dG~~~~l~~dg~S~  354 (366)
                       |++.|||++|+|+|++++|+++.+..|++|+
T Consensus       293 -G~~~gId~~G~Llv~~~~G~~~~~~sGevsl  323 (323)
T 3rkx_A          293 -GQAIDLDYDGYLIVRDEAGESHRLISADIDF  323 (323)
T ss_dssp             -EEEEEECTTSCEEEEETTSCEEEESSCEEEC
T ss_pred             -EEEEEECCCCEEEEEECCCCEEEEEEeeEEC
Confidence             9999999999999999999999999999874
>2dxu_A Biotin--[acetyl-COA-carboxylase] ligase; biotin biosynthesis, dimer, X-RAY diffraction, structural genomics, NPPSFA; HET: BT5; 1.28A {Pyrococcus horikoshii} PDB: 2dzc_A 2ejg_A* 2e3y_A* 2e41_A* 2e64_A 2ejf_A* 2zgw_A* 1wqw_A* 1wpy_A* 1wq7_A 1wnl_A* 1x01_A* 2dkg_A* 2dth_A* 2dti_A* 2dto_A* 2fyk_A* 2djz_A* 2hni_A 2e10_A ... Back     alignment and structure
>2eay_A Biotin [acetyl-COA-carboxylase] ligase; biotin biosynthesis, dimer, X-RAY diffraction, structural genomics, NPPSFA; 1.95A {Aquifex aeolicus} PDB: 3efs_A* 3fjp_A 3efr_A* Back     alignment and structure
>3rux_A BIRA bifunctional protein; biotin-protein ligase, ligase-ligase inhibitor complex; HET: BS5; 1.70A {Mycobacterium tuberculosis} PDB: 3l1a_A 3l2z_A 2cgh_A Back     alignment and structure
>2ej9_A Putative biotin ligase; biotin biosynthesis, monomer, X-RAY diffraction, structural genomics, NPPSFA; HET: BTN; 2.00A {Methanocaldococcus jannaschii} Back     alignment and structure
>1bia_A BIRA bifunctional protein; transcription regulation; 2.30A {Escherichia coli} SCOP: a.4.5.1 b.34.1.1 d.104.1.2 PDB: 1bib_A* 1hxd_A* 2ewn_A* Back     alignment and structure
>3bfm_A Biotin protein ligase-like protein of unknown FUN; structural genomics, joint center for structural genomics, J protein structure initiative; HET: 2PE; 1.70A {Silicibacter SP} Back     alignment and structure
>2qhs_A Lipoyltransferase; globular protein; HET: OCA; 1.50A {Thermus thermophilus} PDB: 2qht_A 2qhu_A 2qhv_A Back     alignment and structure
>1w66_A Lipoyltransferase; lipoate-protein ligase B, lipoic acid, acyltransferase, mycobacterium tuberculosis structural proteomics project; HET: DKA; 1.08A {Mycobacterium tuberculosis} SCOP: d.104.1.3 Back     alignment and structure
>2p5i_A BH3822 protein; PFAM03099, structural genomics, PSI-2, protein structure initiative, NEW YORK structural genomix research consortium; 2.21A {Bacillus halodurans c-125} SCOP: d.104.1.3 Back     alignment and structure
>2p0l_A Lipoate-protein ligase A; PFAM, lopoate-protein ligase A, 10425H, structural genomics, structure initiative, PSI-2; 2.04A {Streptococcus agalactiae} SCOP: d.104.1.3 Back     alignment and structure
>2c8m_A Lipoate-protein ligase A; lipoylation; HET: LPA; 1.89A {Thermoplasma acidophilum} SCOP: d.104.1.3 PDB: 2art_A* 2aru_A* 2c7i_A 2ars_A* 3r07_A Back     alignment and structure
>1vqz_A Lipoate-protein ligase, putative; class II AARS and biotin synthetases fold, SUFE/NIFU fold, S genomics; HET: MSE; 1.99A {Streptococcus pneumoniae} SCOP: d.224.1.3 d.104.1.3 Back     alignment and structure
>2e5a_A Lipoyltransferase 1; lipoyl-AMP, ligase; HET: LAQ; 2.10A {Bos taurus} PDB: 3a7u_A Back     alignment and structure
>3a7r_A Lipoate-protein ligase A; adenylate-forming enzyme, lipoic acid, ATP-binding, cytoplasm, nucleotide-binding, transferase, lipoyl; HET: LAQ; 2.05A {Escherichia coli} PDB: 1x2h_A* 3a7a_A* 1x2g_A* Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 366
d2zgwa2188 d.104.1.2 (A:1-188) Biotin--[acetyl-CoA-carboxylas 3e-30
d1biaa3207 d.104.1.2 (A:64-270) Biotin repressor/biotin holoe 5e-20
>d2zgwa2 d.104.1.2 (A:1-188) Biotin--[acetyl-CoA-carboxylase] ligase catalytic domain {Archaeon Pyrococcus horikoshii [TaxId: 53953]} Length = 188 Back     information, alignment and structure

class: Alpha and beta proteins (a+b)
fold: Class II aaRS and biotin synthetases
superfamily: Class II aaRS and biotin synthetases
family: Biotin holoenzyme synthetase
domain: Biotin--[acetyl-CoA-carboxylase] ligase catalytic domain
species: Archaeon Pyrococcus horikoshii [TaxId: 53953]

 Score =  112 bits (280), Expect = 3e-30
 Identities = 49/206 (23%), Positives = 76/206 (36%), Gaps = 21/206 (10%)

Query: 100 MNSLATNRFGRLLIWSPRLPSTHDVVSHNFCELPVGAVCVADVQFKGRGRSKNAWESPKG 159
           M  L T+  GR +I+   + ST++    ++  L  G V VAD Q  G G     WESP+G
Sbjct: 1   MLGLKTSIIGRRVIYFQEITSTNEFAKTSY--LEEGTVIVADKQTMGHGALNRKWESPEG 58

Query: 160 CLMFSFTIQMEDGRVVPLLQYVASLALTEAINYVCSRDGLPCLDIKIKWPNDLYLNGIKV 219
            L  S  +  +  +                            +D +IKWPND+ +N   +
Sbjct: 59  GLWLSIVLSPKVPQKDLPKIVFLGAVGVVETLKEF------SIDGRIKWPNDVLVNYKAI 112

Query: 220 GGILCTSTYRTKKFNVSIGIGLNVNNE--EPTTCLNAVLRKLSDSTYQFRREDVIAAFFN 277
            G+L       K   + +GIGLNVNN+     T +   L        +     V  +   
Sbjct: 113 AGVLVEG----KGDKIVLGIGLNVNNKVPNGATSMKLELGS------EVPLLSVFRSLIT 162

Query: 278 KFETFYDTFINQGFQTLEELYYKTWL 303
             +  Y  F+      L        +
Sbjct: 163 NLDRLYLNFLKNPMDILNL-VRDNMI 187
>d1biaa3 d.104.1.2 (A:64-270) Biotin repressor/biotin holoenzyme synthetase, catalytic (central) domain {Escherichia coli [TaxId: 562]} Length = 207 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query366
d1biaa3207 Biotin repressor/biotin holoenzyme synthetase, cat 100.0
d2zgwa2188 Biotin--[acetyl-CoA-carboxylase] ligase catalytic 100.0
d1biaa247 Biotin repressor/biotin holoenzyme synthetase, C-t 98.35
d2zgwa147 Biotin--[acetyl-CoA-carboxylase] ligase C-terminal 97.56
d2p0la1269 Lipoate-protein ligase A {Streptococcus agalactiae 96.29
d1vqza2241 LplA-like protein SP1160, N-terminal domain {Strep 95.73
d2p5ia1265 Hypothetical protein BH3822 {Bacillus halodurans [ 95.3
d2c8ma1256 Lipoate-protein ligase A {Thermoplasma acidophilum 94.61
d1x2ga2246 Two-domain LplA, N-terminal domain {Escherichia co 93.77
d1w66a1216 Lipoyltransferase LipB {Mycobacterium tuberculosis 92.55
>d1biaa3 d.104.1.2 (A:64-270) Biotin repressor/biotin holoenzyme synthetase, catalytic (central) domain {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
class: Alpha and beta proteins (a+b)
fold: Class II aaRS and biotin synthetases
superfamily: Class II aaRS and biotin synthetases
family: Biotin holoenzyme synthetase
domain: Biotin repressor/biotin holoenzyme synthetase, catalytic (central) domain
species: Escherichia coli [TaxId: 562]

Probab=100.00  E-value=3.2e-49  Score=361.03  Aligned_cols=201  Identities=25%  Similarity=0.412  Sum_probs=156.0

Q ss_pred             CCCCHHHHHhhcccccCCceEEEcccCCCHHHHHHHhccCCCCceEEEeCcccCCccCCCCeeecCCC-Cceeeeeeecc
Q 017780           92 ESFDVELFMNSLATNRFGRLLIWSPRLPSTHDVVSHNFCELPVGAVCVADVQFKGRGRSKNAWESPKG-CLMFSFTIQME  170 (366)
Q Consensus        92 ~~f~~~~~~~~L~t~~~g~~li~~~~v~STn~~a~~~~~~~~~g~vviA~~QTaGRGR~GR~W~Sp~G-~L~fSl~l~~~  170 (366)
                      +.+|.+.+..+|.    +.+++++|+++|||+++++.....++|++|+|++||+||||+||+|+||+| +||||++++++
T Consensus         2 ~~l~~~~i~~~l~----~~~i~~~~~i~STn~~~~~~~~~~~~~~vv~A~~QT~GrGR~gr~W~S~~G~~l~~S~~~~~~   77 (207)
T d1biaa3           2 QLLNAKQILGQLD----GGSVAVLPVIDSTNQYLLDRIGELKSGDACIAEYQQAGRGRRGRKWFSPFGANLYLSMFWRLE   77 (207)
T ss_dssp             CCCCHHHHHHTCC----SSCEEECSSBSCHHHHHHTTGGGCCTTCEEEESCBTTC---------CCTTSEEEEEEEEEEC
T ss_pred             CcCCHHHHHhhCC----CCcEEEEeccCcHHHHHHHhhhcCCCCcEEEECccccCCCcCCCccccccccccccccccccc
Confidence            4578888888874    356999999999999999887778899999999999999999999999999 59999999876


Q ss_pred             -CCCCcchhHHHHHHHHHHHHHHhhhcCCCCCCCceeEecCcEEECCEEEEEEeeeeeccCCc-ceEEEeeeccCCCCCC
Q 017780          171 -DGRVVPLLQYVASLALTEAINYVCSRDGLPCLDIKIKWPNDLYLNGIKVGGILCTSTYRTKK-FNVSIGIGLNVNNEEP  248 (366)
Q Consensus       171 -~~~~~~~ls~~~glAV~~aL~~~~~~~G~~~~~v~IKWPNDI~v~gkKlgGILiE~~~~~~~-~~vvIGIGINvn~~~p  248 (366)
                       +....+.+++++|+||+++|+++.      ..+++||||||||++|+|+||||+|.....+. ..+|||||||+++..+
T Consensus        78 ~~~~~~~~l~~~~~lav~~~l~~~~------~~~~~iKWPNDIl~~~kKi~GIL~E~~~~~~~~~~vviGiGiNv~~~~~  151 (207)
T d1biaa3          78 QGPAAAIGLSLVIGIVMAEVLRKLG------ADKVRVKWPNDLYLQDRKLAGILVELTGKTGDAAQIVIGAGINMAMRRV  151 (207)
T ss_dssp             C-CCCTHHHHHHHHHHHHHHHHHTT------CTTCEEETTTEEEETTEEEEEEEEEEEC----CEEEEEEEEEECCC---
T ss_pred             cCchhhhhhhhHHHHHHHHHHhhcc------cceeeeeechhhhcCCCccccceEEEEeccCCcceeeeecccccccCCC
Confidence             445678899999999999999874      25799999999999999999999998876554 4689999999997543


Q ss_pred             cch-HHHHHHhhhcCCCCCCHHHHHHHHHHHHHHHHHHHHhcChHHHHHHHHHHh
Q 017780          249 TTC-LNAVLRKLSDSTYQFRREDVIAAFFNKFETFYDTFINQGFQTLEELYYKTW  302 (366)
Q Consensus       249 ~t~-l~~~l~~~~~~~~~~~r~~Ll~~ll~~~~~~~~~~~~~gf~~l~~~y~~~~  302 (366)
                      +.. .......+.+.+..++++++++.++++|+.+|..|.++||.+++++|++++
T Consensus       152 ~~~~~~~~~s~l~~~~~~i~~~~l~~~ll~~l~~~l~~~~~~gf~~~~~~w~~~D  206 (207)
T d1biaa3         152 EESVVNQGWITLQEAGINLDRNTLAAMLIRELRAALELFEQEGLAPYLSRWEKLD  206 (207)
T ss_dssp             --------CCCTTTTTCCCCHHHHHHHHHHHHHHHHHHHHHHTTGGGHHHHHHHB
T ss_pred             ccccccchhHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHhc
Confidence            222 222223334456789999999999999999999999999999999999874
>d2zgwa2 d.104.1.2 (A:1-188) Biotin--[acetyl-CoA-carboxylase] ligase catalytic domain {Archaeon Pyrococcus horikoshii [TaxId: 53953]} Back     information, alignment and structure
>d1biaa2 b.34.1.1 (A:271-317) Biotin repressor/biotin holoenzyme synthetase, C-terminal domain {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d2zgwa1 b.34.1.1 (A:189-235) Biotin--[acetyl-CoA-carboxylase] ligase C-terminal domain {Archaeon Pyrococcus horikoshii [TaxId: 53953]} Back     information, alignment and structure
>d2p0la1 d.104.1.3 (A:4-272) Lipoate-protein ligase A {Streptococcus agalactiae [TaxId: 1311]} Back     information, alignment and structure
>d1vqza2 d.104.1.3 (A:1-241) LplA-like protein SP1160, N-terminal domain {Streptococcus pneumoniae [TaxId: 1313]} Back     information, alignment and structure
>d2p5ia1 d.104.1.3 (A:14-278) Hypothetical protein BH3822 {Bacillus halodurans [TaxId: 86665]} Back     information, alignment and structure
>d2c8ma1 d.104.1.3 (A:1-256) Lipoate-protein ligase A {Thermoplasma acidophilum [TaxId: 2303]} Back     information, alignment and structure
>d1x2ga2 d.104.1.3 (A:1-246) Two-domain LplA, N-terminal domain {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1w66a1 d.104.1.3 (A:1-216) Lipoyltransferase LipB {Mycobacterium tuberculosis [TaxId: 1773]} Back     information, alignment and structure