Citrus Sinensis ID: 017781
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
|---|
|
|
Close Homologs for Annotation Transfer
Close Homologs in SWISS-PROT Database Detected by BLAST 
Original result of BLAST against SWISS-PROT Database
| ID | Alignment graph | Length |
Definition |
RBH(Q2H) |
RBH(H2Q) |
Q cover |
H cover |
Identity |
E-value |
| Query | 366 | 2.2.26 [Sep-21-2011] | |||||||
| Q9LRR9 | 367 | Peroxisomal (S)-2-hydroxy | yes | no | 0.989 | 0.986 | 0.896 | 0.0 | |
| P05414 | 369 | Peroxisomal (S)-2-hydroxy | N/A | no | 0.994 | 0.986 | 0.877 | 0.0 | |
| Q9LRS0 | 367 | Peroxisomal (S)-2-hydroxy | no | no | 0.989 | 0.986 | 0.872 | 0.0 | |
| O49506 | 368 | Peroxisomal (S)-2-hydroxy | no | no | 0.967 | 0.961 | 0.849 | 0.0 | |
| Q10CE4 | 369 | Peroxisomal (S)-2-hydroxy | yes | no | 0.997 | 0.989 | 0.848 | 1e-179 | |
| B8AKX6 | 369 | Peroxisomal (S)-2-hydroxy | N/A | no | 0.997 | 0.989 | 0.848 | 1e-179 | |
| Q6YT73 | 369 | Peroxisomal (S)-2-hydroxy | no | no | 0.972 | 0.964 | 0.861 | 1e-178 | |
| B8B7C5 | 369 | Peroxisomal (S)-2-hydroxy | N/A | no | 0.972 | 0.964 | 0.861 | 1e-178 | |
| Q7FAS1 | 367 | Peroxisomal (S)-2-hydroxy | no | no | 0.972 | 0.970 | 0.813 | 1e-169 | |
| B8AUI3 | 367 | Peroxisomal (S)-2-hydroxy | N/A | no | 0.972 | 0.970 | 0.813 | 1e-169 |
| >sp|Q9LRR9|GLO1_ARATH Peroxisomal (S)-2-hydroxy-acid oxidase GLO1 OS=Arabidopsis thaliana GN=GLO1 PE=1 SV=1 | Back alignment and function desciption |
|---|
Score = 659 bits (1701), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 330/368 (89%), Positives = 350/368 (95%), Gaps = 6/368 (1%)
Query: 3 EITNVMEYEAIAKEKLPKMVFDYYASGAEDQWTLQENRNAFSRILFRPRILIDVSKIDMN 62
EITNV EY+AIAK+KLPKMV+DYYASGAEDQWTLQENRNAF+RILFRPRILIDVSKIDM
Sbjct: 2 EITNVTEYDAIAKQKLPKMVYDYYASGAEDQWTLQENRNAFARILFRPRILIDVSKIDMT 61
Query: 63 TTVLGFKISMPIMIAPTAMQKMAHPEGEYATARAASAAGTIMTLSSWSTSSVEEVASTGP 122
TTVLGFKISMPIM+APTAMQKMAHP+GEYATARAASAAGTIMTLSSW+TSSVEEVASTGP
Sbjct: 62 TTVLGFKISMPIMVAPTAMQKMAHPDGEYATARAASAAGTIMTLSSWATSSVEEVASTGP 121
Query: 123 GIRFFQLYVYKDRNVVAQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLTLK 182
GIRFFQLYVYK+RNVV QLVRRAERAGFKAIALTVDTPRLGRRE+DIKNRFTLPP LTLK
Sbjct: 122 GIRFFQLYVYKNRNVVEQLVRRAERAGFKAIALTVDTPRLGRRESDIKNRFTLPPNLTLK 181
Query: 183 NFQGLDLGKMDEANDSGLAAYVAGQIDRSLSWKDVKWLQTITKLPILVKGVLTAED---- 238
NF+GLDLGKMDEANDSGLA+YVAGQIDR+LSWKDV+WLQTITKLPILVKGVLT ED
Sbjct: 182 NFEGLDLGKMDEANDSGLASYVAGQIDRTLSWKDVQWLQTITKLPILVKGVLTGEDARIA 241
Query: 239 VQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALG 298
+QAGAAGIIVSNHGARQLDYVPATI ALEEVVKATQGRIPVFLDGGVRRGTDVFKALALG
Sbjct: 242 IQAGAAGIIVSNHGARQLDYVPATISALEEVVKATQGRIPVFLDGGVRRGTDVFKALALG 301
Query: 299 ASGIFIGRPVVYSLAAEGEKGVRRVLEMLREEFELAMALSGCRSLKEITRDHIVTEWDAS 358
ASGIFIGRPVV+SLAAEGE GVR+VL+MLR+EFEL MALSGCRSLKEI+R+HI TEWD
Sbjct: 302 ASGIFIGRPVVFSLAAEGEAGVRKVLQMLRDEFELTMALSGCRSLKEISRNHITTEWDT- 360
Query: 359 LPRPVPRL 366
PRP RL
Sbjct: 361 -PRPSARL 367
|
Arabidopsis thaliana (taxid: 3702) EC: 1EC: .EC: 1EC: .EC: 3EC: .EC: 1EC: 5 |
| >sp|P05414|GOX_SPIOL Peroxisomal (S)-2-hydroxy-acid oxidase OS=Spinacia oleracea PE=1 SV=1 | Back alignment and function description |
|---|
Score = 650 bits (1678), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 323/368 (87%), Positives = 344/368 (93%), Gaps = 4/368 (1%)
Query: 3 EITNVMEYEAIAKEKLPKMVFDYYASGAEDQWTLQENRNAFSRILFRPRILIDVSKIDMN 62
EITNV EYEAIAK+KLPKMV+DYYASGAEDQWTL ENRNAFSRILFRPRILIDV+ IDM
Sbjct: 2 EITNVNEYEAIAKQKLPKMVYDYYASGAEDQWTLAENRNAFSRILFRPRILIDVTNIDMT 61
Query: 63 TTVLGFKISMPIMIAPTAMQKMAHPEGEYATARAASAAGTIMTLSSWSTSSVEEVASTGP 122
TT+LGFKISMPIMIAPTAMQKMAHPEGEYATARAASAAGTIMTLSSW+TSSVEEVASTGP
Sbjct: 62 TTILGFKISMPIMIAPTAMQKMAHPEGEYATARAASAAGTIMTLSSWATSSVEEVASTGP 121
Query: 123 GIRFFQLYVYKDRNVVAQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLTLK 182
GIRFFQLYVYKDRNVVAQLVRRAERAGFKAIALTVDTPRLGRREADIKNRF LPPFLTLK
Sbjct: 122 GIRFFQLYVYKDRNVVAQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFVLPPFLTLK 181
Query: 183 NFQGLDLGKMDEANDSGLAAYVAGQIDRSLSWKDVKWLQTITKLPILVKGVLTAED---- 238
NF+G+DLGKMD+ANDSGL++YVAGQIDRSLSWKDV WLQTIT LPILVKGV+TAED
Sbjct: 182 NFEGIDLGKMDKANDSGLSSYVAGQIDRSLSWKDVAWLQTITSLPILVKGVITAEDARLA 241
Query: 239 VQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALG 298
VQ GAAGIIVSNHGARQLDYVPATIMALEEVVKA QGRIPVFLDGGVRRGTDVFKALALG
Sbjct: 242 VQHGAAGIIVSNHGARQLDYVPATIMALEEVVKAAQGRIPVFLDGGVRRGTDVFKALALG 301
Query: 299 ASGIFIGRPVVYSLAAEGEKGVRRVLEMLREEFELAMALSGCRSLKEITRDHIVTEWDAS 358
A+G+FIGRPVV+SLAAEGE GV++VL+M+R+EFEL MALSGCRSLKEI+R HI +WD
Sbjct: 302 AAGVFIGRPVVFSLAAEGEAGVKKVLQMMRDEFELTMALSGCRSLKEISRSHIAADWDGP 361
Query: 359 LPRPVPRL 366
R V RL
Sbjct: 362 SSRAVARL 369
|
Spinacia oleracea (taxid: 3562) EC: 1 EC: . EC: 1 EC: . EC: 3 EC: . EC: 1 EC: 5 |
| >sp|Q9LRS0|GLO2_ARATH Peroxisomal (S)-2-hydroxy-acid oxidase GLO2 OS=Arabidopsis thaliana GN=GLO2 PE=1 SV=1 | Back alignment and function description |
|---|
Score = 646 bits (1666), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 321/368 (87%), Positives = 347/368 (94%), Gaps = 6/368 (1%)
Query: 3 EITNVMEYEAIAKEKLPKMVFDYYASGAEDQWTLQENRNAFSRILFRPRILIDVSKIDMN 62
EITNV EY+AIAK KLPKMV+DYYASGAEDQWTLQENRNAF+RILFRPRILIDV+KIDM
Sbjct: 2 EITNVTEYDAIAKAKLPKMVYDYYASGAEDQWTLQENRNAFARILFRPRILIDVNKIDMA 61
Query: 63 TTVLGFKISMPIMIAPTAMQKMAHPEGEYATARAASAAGTIMTLSSWSTSSVEEVASTGP 122
TTVLGFKISMPIM+APTA QKMAHP+GEYATARAASAAGTIMTLSSW+TSSVEEVASTGP
Sbjct: 62 TTVLGFKISMPIMVAPTAFQKMAHPDGEYATARAASAAGTIMTLSSWATSSVEEVASTGP 121
Query: 123 GIRFFQLYVYKDRNVVAQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLTLK 182
GIRFFQLYVYK+R VV QLVRRAE+AGFKAIALTVDTPRLGRRE+DIKNRFTLPP LTLK
Sbjct: 122 GIRFFQLYVYKNRKVVEQLVRRAEKAGFKAIALTVDTPRLGRRESDIKNRFTLPPNLTLK 181
Query: 183 NFQGLDLGKMDEANDSGLAAYVAGQIDRSLSWKDVKWLQTITKLPILVKGVLTAED---- 238
NF+GLDLGKMDEANDSGLA+YVAGQIDR+LSWKD++WLQTIT +PILVKGVLT ED
Sbjct: 182 NFEGLDLGKMDEANDSGLASYVAGQIDRTLSWKDIQWLQTITNMPILVKGVLTGEDARIA 241
Query: 239 VQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALG 298
+QAGAAGIIVSNHGARQLDYVPATI ALEEVVKATQGR+PVFLDGGVRRGTDVFKALALG
Sbjct: 242 IQAGAAGIIVSNHGARQLDYVPATISALEEVVKATQGRVPVFLDGGVRRGTDVFKALALG 301
Query: 299 ASGIFIGRPVVYSLAAEGEKGVRRVLEMLREEFELAMALSGCRSLKEITRDHIVTEWDAS 358
ASGIFIGRPVV++LAAEGE GV++VL+MLR+EFEL MALSGCRSL EITR+HIVTEWD
Sbjct: 302 ASGIFIGRPVVFALAAEGEAGVKKVLQMLRDEFELTMALSGCRSLSEITRNHIVTEWDT- 360
Query: 359 LPRPVPRL 366
PR +PRL
Sbjct: 361 -PRHLPRL 367
|
Arabidopsis thaliana (taxid: 3702) EC: 1 EC: . EC: 1 EC: . EC: 3 EC: . EC: 1 EC: 5 |
| >sp|O49506|GLO5_ARATH Peroxisomal (S)-2-hydroxy-acid oxidase GLO5 OS=Arabidopsis thaliana GN=GLO5 PE=1 SV=1 | Back alignment and function description |
|---|
Score = 634 bits (1636), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 304/358 (84%), Positives = 335/358 (93%), Gaps = 4/358 (1%)
Query: 3 EITNVMEYEAIAKEKLPKMVFDYYASGAEDQWTLQENRNAFSRILFRPRILIDVSKIDMN 62
EITNVMEYE IAKEKLPKMV+DYYASGAEDQWTLQENRNAFSRILFRPRILIDVSKID++
Sbjct: 2 EITNVMEYEKIAKEKLPKMVYDYYASGAEDQWTLQENRNAFSRILFRPRILIDVSKIDVS 61
Query: 63 TTVLGFKISMPIMIAPTAMQKMAHPEGEYATARAASAAGTIMTLSSWSTSSVEEVASTGP 122
TTVLGF ISMPIMIAPTAMQKMAHP+GE ATARA SAAGTIMTLSSW+T SVEEVASTGP
Sbjct: 62 TTVLGFNISMPIMIAPTAMQKMAHPDGELATARATSAAGTIMTLSSWATCSVEEVASTGP 121
Query: 123 GIRFFQLYVYKDRNVVAQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLTLK 182
GIRFFQLYVYKDRNVV QLV+RAE AGFKAIALTVDTPRLGRRE+DIKNRF LP LTLK
Sbjct: 122 GIRFFQLYVYKDRNVVIQLVKRAEEAGFKAIALTVDTPRLGRRESDIKNRFALPRGLTLK 181
Query: 183 NFQGLDLGKMDEANDSGLAAYVAGQIDRSLSWKDVKWLQTITKLPILVKGVLTAED---- 238
NF+GLDLGK+D+ NDSGLA+YVAGQ+D+SLSWKD+KWLQ+IT LPILVKGV+TAED
Sbjct: 182 NFEGLDLGKIDKTNDSGLASYVAGQVDQSLSWKDIKWLQSITSLPILVKGVITAEDARIA 241
Query: 239 VQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALG 298
V+ GAAGIIVSNHGARQLDYVPATI+ALEEVVKA +GRIPVFLDGGVRRGTDVFKALALG
Sbjct: 242 VEYGAAGIIVSNHGARQLDYVPATIVALEEVVKAVEGRIPVFLDGGVRRGTDVFKALALG 301
Query: 299 ASGIFIGRPVVYSLAAEGEKGVRRVLEMLREEFELAMALSGCRSLKEITRDHIVTEWD 356
ASG+F+GRP ++SLAA+GE GVR++L+MLR+EFEL MALSGCRSL+EI+R HI T+WD
Sbjct: 302 ASGVFVGRPSLFSLAADGEAGVRKMLQMLRDEFELTMALSGCRSLREISRTHIKTDWD 359
|
Arabidopsis thaliana (taxid: 3702) EC: 1 EC: . EC: 1 EC: . EC: 3 EC: . EC: 1 EC: 5 |
| >sp|Q10CE4|GLO1_ORYSJ Peroxisomal (S)-2-hydroxy-acid oxidase GLO1 OS=Oryza sativa subsp. japonica GN=GLO1 PE=1 SV=1 | Back alignment and function description |
|---|
Score = 629 bits (1622), Expect = e-179, Method: Compositional matrix adjust.
Identities = 314/370 (84%), Positives = 342/370 (92%), Gaps = 5/370 (1%)
Query: 1 MGEITNVMEYEAIAKEKLPKMVFDYYASGAEDQWTLQENRNAFSRILFRPRILIDVSKID 60
MGEITNVMEY+AIAK+KLPKM++DYYASGAED+WTL+ENR AFSRILFRPRILIDVSKID
Sbjct: 1 MGEITNVMEYQAIAKQKLPKMIYDYYASGAEDEWTLKENREAFSRILFRPRILIDVSKID 60
Query: 61 MNTTVLGFKISMPIMIAPTAMQKMAHPEGEYATARAASAAGTIMTLSSWSTSSVEEVAST 120
M+ TVLGFKISMPIMIAP+AMQKMAHP+GEYATARAASAAGTIMTLSSW+TSSVEEVAST
Sbjct: 61 MSATVLGFKISMPIMIAPSAMQKMAHPDGEYATARAASAAGTIMTLSSWATSSVEEVAST 120
Query: 121 GPGIRFFQLYVYKDRNVVAQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLT 180
GPGIRFFQLYVYKDRNVV QLVRRAERAGFKAIALTVDTPRLGRREADIKNRF LPP+LT
Sbjct: 121 GPGIRFFQLYVYKDRNVVEQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFVLPPYLT 180
Query: 181 LKNFQGLDLGKMDEANDSGLAAYVAGQIDRSLSWKDVKWLQTITKLPILVKGVLTAED-- 238
LKNF+GLDL +MD++NDSGLA+YVAGQIDR+LSWKDVKWLQ+IT LPILVKGV+TAED
Sbjct: 181 LKNFEGLDLAEMDKSNDSGLASYVAGQIDRTLSWKDVKWLQSITSLPILVKGVITAEDAR 240
Query: 239 --VQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALA 296
V +GAAGIIVSNHGARQLDYVPATI ALEEVV A GRIPV+LDGGVRRGTDVFKALA
Sbjct: 241 LAVHSGAAGIIVSNHGARQLDYVPATISALEEVVTAAAGRIPVYLDGGVRRGTDVFKALA 300
Query: 297 LGASGIFIGRPVVYSLAAEGEKGVRRVLEMLREEFELAMALSGCRSLKEITRDHIVTEWD 356
LGA+G+FIGRPVV++LAAEGE GVR VL M+REEFEL MALSGC SL +ITR HI T+ D
Sbjct: 301 LGAAGVFIGRPVVFALAAEGEAGVRNVLRMMREEFELTMALSGCTSLADITRAHIYTDAD 360
Query: 357 ASLPRPVPRL 366
L RP PRL
Sbjct: 361 -RLARPFPRL 369
|
Photorespiratory enzyme that can exert a strong regulation over photosynthesis, possibly through a feed-back inhibition on Rubisco activase. Not required for oxalate accumulation. Oryza sativa subsp. japonica (taxid: 39947) EC: 1 EC: . EC: 1 EC: . EC: 3 EC: . EC: 1 EC: 5 |
| >sp|B8AKX6|GLO1_ORYSI Peroxisomal (S)-2-hydroxy-acid oxidase GLO1 OS=Oryza sativa subsp. indica GN=GLO1 PE=3 SV=1 | Back alignment and function description |
|---|
Score = 629 bits (1622), Expect = e-179, Method: Compositional matrix adjust.
Identities = 314/370 (84%), Positives = 342/370 (92%), Gaps = 5/370 (1%)
Query: 1 MGEITNVMEYEAIAKEKLPKMVFDYYASGAEDQWTLQENRNAFSRILFRPRILIDVSKID 60
MGEITNVMEY+AIAK+KLPKM++DYYASGAED+WTL+ENR AFSRILFRPRILIDVSKID
Sbjct: 1 MGEITNVMEYQAIAKQKLPKMIYDYYASGAEDEWTLKENREAFSRILFRPRILIDVSKID 60
Query: 61 MNTTVLGFKISMPIMIAPTAMQKMAHPEGEYATARAASAAGTIMTLSSWSTSSVEEVAST 120
M+ TVLGFKISMPIMIAP+AMQKMAHP+GEYATARAASAAGTIMTLSSW+TSSVEEVAST
Sbjct: 61 MSATVLGFKISMPIMIAPSAMQKMAHPDGEYATARAASAAGTIMTLSSWATSSVEEVAST 120
Query: 121 GPGIRFFQLYVYKDRNVVAQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLT 180
GPGIRFFQLYVYKDRNVV QLVRRAERAGFKAIALTVDTPRLGRREADIKNRF LPP+LT
Sbjct: 121 GPGIRFFQLYVYKDRNVVEQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFVLPPYLT 180
Query: 181 LKNFQGLDLGKMDEANDSGLAAYVAGQIDRSLSWKDVKWLQTITKLPILVKGVLTAED-- 238
LKNF+GLDL +MD++NDSGLA+YVAGQIDR+LSWKDVKWLQ+IT LPILVKGV+TAED
Sbjct: 181 LKNFEGLDLAEMDKSNDSGLASYVAGQIDRTLSWKDVKWLQSITSLPILVKGVITAEDAR 240
Query: 239 --VQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALA 296
V +GAAGIIVSNHGARQLDYVPATI ALEEVV A GRIPV+LDGGVRRGTDVFKALA
Sbjct: 241 LAVHSGAAGIIVSNHGARQLDYVPATISALEEVVTAAAGRIPVYLDGGVRRGTDVFKALA 300
Query: 297 LGASGIFIGRPVVYSLAAEGEKGVRRVLEMLREEFELAMALSGCRSLKEITRDHIVTEWD 356
LGA+G+FIGRPVV++LAAEGE GVR VL M+REEFEL MALSGC SL +ITR HI T+ D
Sbjct: 301 LGAAGVFIGRPVVFALAAEGEAGVRNVLRMMREEFELTMALSGCTSLADITRAHIYTDAD 360
Query: 357 ASLPRPVPRL 366
L RP PRL
Sbjct: 361 -RLARPFPRL 369
|
Photorespiratory enzyme that can exert a strong regulation over photosynthesis, possibly through a feed-back inhibition on Rubisco activase. Not required for oxalate accumulation. Oryza sativa subsp. indica (taxid: 39946) EC: 1 EC: . EC: 1 EC: . EC: 3 EC: . EC: 1 EC: 5 |
| >sp|Q6YT73|GLO5_ORYSJ Peroxisomal (S)-2-hydroxy-acid oxidase GLO5 OS=Oryza sativa subsp. japonica GN=GLO5 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 625 bits (1613), Expect = e-178, Method: Compositional matrix adjust.
Identities = 310/360 (86%), Positives = 339/360 (94%), Gaps = 4/360 (1%)
Query: 1 MGEITNVMEYEAIAKEKLPKMVFDYYASGAEDQWTLQENRNAFSRILFRPRILIDVSKID 60
MGEITNV EY+AIAK+KLPKM++DYYASGAED+WTLQENR AF+RILFRPRILIDVSKID
Sbjct: 1 MGEITNVTEYQAIAKQKLPKMIYDYYASGAEDEWTLQENREAFARILFRPRILIDVSKID 60
Query: 61 MNTTVLGFKISMPIMIAPTAMQKMAHPEGEYATARAASAAGTIMTLSSWSTSSVEEVAST 120
M TTVLGFKISMPIMIAP+AMQKMAHP+GEYATARAASAAGTIMTLSSW+TSSVEEVAST
Sbjct: 61 MATTVLGFKISMPIMIAPSAMQKMAHPDGEYATARAASAAGTIMTLSSWATSSVEEVAST 120
Query: 121 GPGIRFFQLYVYKDRNVVAQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLT 180
GPGIRFFQLYVYKDR VV QLVRRAERAGFKAIALTVDTPRLGRREADIKNRF LPPFLT
Sbjct: 121 GPGIRFFQLYVYKDRRVVEQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFVLPPFLT 180
Query: 181 LKNFQGLDLGKMDEANDSGLAAYVAGQIDRSLSWKDVKWLQTITKLPILVKGVLTAED-- 238
LKNF+GL+LGKMD+A+DSGLA+YVAGQIDR+LSWKDVKWLQTIT LPILVKGV+TAED
Sbjct: 181 LKNFEGLELGKMDQASDSGLASYVAGQIDRTLSWKDVKWLQTITTLPILVKGVITAEDTR 240
Query: 239 --VQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALA 296
V+ GAAGIIVSNHGARQLDYVPATI ALEEVVKA +G++PVFLDGGVRRGTDVFKALA
Sbjct: 241 LAVENGAAGIIVSNHGARQLDYVPATISALEEVVKAARGQLPVFLDGGVRRGTDVFKALA 300
Query: 297 LGASGIFIGRPVVYSLAAEGEKGVRRVLEMLREEFELAMALSGCRSLKEITRDHIVTEWD 356
LGA+G+FIGRPVV+SLAA GE GVR VL+MLR+EFEL MALSGC SL +ITR+H++TE D
Sbjct: 301 LGAAGVFIGRPVVFSLAAAGEAGVRNVLQMLRDEFELTMALSGCTSLADITRNHVITEAD 360
|
Photorespiratory enzyme that can exert a strong regulation over photosynthesis, possibly through a feed-back inhibition on Rubisco activase. Not required for oxalate accumulation. Oryza sativa subsp. japonica (taxid: 39947) EC: 1 EC: . EC: 1 EC: . EC: 3 EC: . EC: 1 EC: 5 |
| >sp|B8B7C5|GLO5_ORYSI Peroxisomal (S)-2-hydroxy-acid oxidase GLO5 OS=Oryza sativa subsp. indica GN=GLO5 PE=3 SV=1 | Back alignment and function description |
|---|
Score = 625 bits (1613), Expect = e-178, Method: Compositional matrix adjust.
Identities = 310/360 (86%), Positives = 339/360 (94%), Gaps = 4/360 (1%)
Query: 1 MGEITNVMEYEAIAKEKLPKMVFDYYASGAEDQWTLQENRNAFSRILFRPRILIDVSKID 60
MGEITNV EY+AIAK+KLPKM++DYYASGAED+WTLQENR AF+RILFRPRILIDVSKID
Sbjct: 1 MGEITNVTEYQAIAKQKLPKMIYDYYASGAEDEWTLQENREAFARILFRPRILIDVSKID 60
Query: 61 MNTTVLGFKISMPIMIAPTAMQKMAHPEGEYATARAASAAGTIMTLSSWSTSSVEEVAST 120
M TTVLGFKISMPIMIAP+AMQKMAHP+GEYATARAASAAGTIMTLSSW+TSSVEEVAST
Sbjct: 61 MATTVLGFKISMPIMIAPSAMQKMAHPDGEYATARAASAAGTIMTLSSWATSSVEEVAST 120
Query: 121 GPGIRFFQLYVYKDRNVVAQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLT 180
GPGIRFFQLYVYKDR VV QLVRRAERAGFKAIALTVDTPRLGRREADIKNRF LPPFLT
Sbjct: 121 GPGIRFFQLYVYKDRRVVEQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFVLPPFLT 180
Query: 181 LKNFQGLDLGKMDEANDSGLAAYVAGQIDRSLSWKDVKWLQTITKLPILVKGVLTAED-- 238
LKNF+GL+LGKMD+A+DSGLA+YVAGQIDR+LSWKDVKWLQTIT LPILVKGV+TAED
Sbjct: 181 LKNFEGLELGKMDQASDSGLASYVAGQIDRTLSWKDVKWLQTITTLPILVKGVITAEDTR 240
Query: 239 --VQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALA 296
V+ GAAGIIVSNHGARQLDYVPATI ALEEVVKA +G++PVFLDGGVRRGTDVFKALA
Sbjct: 241 LAVENGAAGIIVSNHGARQLDYVPATISALEEVVKAARGQLPVFLDGGVRRGTDVFKALA 300
Query: 297 LGASGIFIGRPVVYSLAAEGEKGVRRVLEMLREEFELAMALSGCRSLKEITRDHIVTEWD 356
LGA+G+FIGRPVV+SLAA GE GVR VL+MLR+EFEL MALSGC SL +ITR+H++TE D
Sbjct: 301 LGAAGVFIGRPVVFSLAAAGEAGVRNVLQMLRDEFELTMALSGCTSLADITRNHVITEAD 360
|
Photorespiratory enzyme that can exert a strong regulation over photosynthesis, possibly through a feed-back inhibition on Rubisco activase. Not required for oxalate accumulation. Oryza sativa subsp. indica (taxid: 39946) EC: 1 EC: . EC: 1 EC: . EC: 3 EC: . EC: 1 EC: 5 |
| >sp|Q7FAS1|GLO3_ORYSJ Peroxisomal (S)-2-hydroxy-acid oxidase GLO3 OS=Oryza sativa subsp. japonica GN=GLO3 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 593 bits (1530), Expect = e-169, Method: Compositional matrix adjust.
Identities = 293/360 (81%), Positives = 323/360 (89%), Gaps = 4/360 (1%)
Query: 1 MGEITNVMEYEAIAKEKLPKMVFDYYASGAEDQWTLQENRNAFSRILFRPRILIDVSKID 60
M ITNV EYE +AK+KLPKM++DYYASGAEDQWTL+ENR AFSRILFRPRILIDVS+I+
Sbjct: 1 MELITNVSEYEQLAKQKLPKMIYDYYASGAEDQWTLKENREAFSRILFRPRILIDVSRIN 60
Query: 61 MNTTVLGFKISMPIMIAPTAMQKMAHPEGEYATARAASAAGTIMTLSSWSTSSVEEVAST 120
M T VLGF ISMPIMIAP+AMQKMAHPEGE ATARAASAAGTIMTLSSWSTSSVEEV S
Sbjct: 61 MATNVLGFNISMPIMIAPSAMQKMAHPEGELATARAASAAGTIMTLSSWSTSSVEEVNSA 120
Query: 121 GPGIRFFQLYVYKDRNVVAQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLT 180
PGIRFFQLYVYKDRN+V QLVRRAE AGFKAIALTVDTPRLGRREADIKNRF LPP L
Sbjct: 121 APGIRFFQLYVYKDRNIVRQLVRRAELAGFKAIALTVDTPRLGRREADIKNRFNLPPHLV 180
Query: 181 LKNFQGLDLGKMDEANDSGLAAYVAGQIDRSLSWKDVKWLQTITKLPILVKGVLTAED-- 238
LKNF+ LDLGKMD+ NDSGLA+YVA Q+DRSLSW DVKWLQTIT LPILVKGV+TAED
Sbjct: 181 LKNFEALDLGKMDKTNDSGLASYVASQVDRSLSWTDVKWLQTITSLPILVKGVMTAEDTR 240
Query: 239 --VQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALA 296
V++GAAGIIVSNHGARQLDYVPATI LEEVV+ +GR+PVFLDGGVRRGTDVFKALA
Sbjct: 241 LAVESGAAGIIVSNHGARQLDYVPATISCLEEVVREAKGRLPVFLDGGVRRGTDVFKALA 300
Query: 297 LGASGIFIGRPVVYSLAAEGEKGVRRVLEMLREEFELAMALSGCRSLKEITRDHIVTEWD 356
LGASG+FIGRPV++SLA +GE GVR+VL+MLR+E EL MALSGC SL EITR+H++T+ D
Sbjct: 301 LGASGVFIGRPVLFSLAVDGEAGVRKVLQMLRDELELTMALSGCTSLAEITRNHVITDSD 360
|
Photorespiratory enzyme that can exert a strong regulation over photosynthesis, possibly through a feed-back inhibition on Rubisco activase. Not required for oxalate accumulation. Oryza sativa subsp. japonica (taxid: 39947) EC: 1 EC: . EC: 1 EC: . EC: 3 EC: . EC: 1 EC: 5 |
| >sp|B8AUI3|GLO3_ORYSI Peroxisomal (S)-2-hydroxy-acid oxidase GLO3 OS=Oryza sativa subsp. indica GN=GLO3 PE=3 SV=1 | Back alignment and function description |
|---|
Score = 593 bits (1530), Expect = e-169, Method: Compositional matrix adjust.
Identities = 293/360 (81%), Positives = 323/360 (89%), Gaps = 4/360 (1%)
Query: 1 MGEITNVMEYEAIAKEKLPKMVFDYYASGAEDQWTLQENRNAFSRILFRPRILIDVSKID 60
M ITNV EYE +AK+KLPKM++DYYASGAEDQWTL+ENR AFSRILFRPRILIDVS+I+
Sbjct: 1 MELITNVSEYEQLAKQKLPKMIYDYYASGAEDQWTLKENREAFSRILFRPRILIDVSRIN 60
Query: 61 MNTTVLGFKISMPIMIAPTAMQKMAHPEGEYATARAASAAGTIMTLSSWSTSSVEEVAST 120
M T VLGF ISMPIMIAP+AMQKMAHPEGE ATARAASAAGTIMTLSSWSTSSVEEV S
Sbjct: 61 MATNVLGFNISMPIMIAPSAMQKMAHPEGELATARAASAAGTIMTLSSWSTSSVEEVNSA 120
Query: 121 GPGIRFFQLYVYKDRNVVAQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLT 180
PGIRFFQLYVYKDRN+V QLVRRAE AGFKAIALTVDTPRLGRREADIKNRF LPP L
Sbjct: 121 APGIRFFQLYVYKDRNIVRQLVRRAELAGFKAIALTVDTPRLGRREADIKNRFNLPPHLV 180
Query: 181 LKNFQGLDLGKMDEANDSGLAAYVAGQIDRSLSWKDVKWLQTITKLPILVKGVLTAED-- 238
LKNF+ LDLGKMD+ NDSGLA+YVA Q+DRSLSW DVKWLQTIT LPILVKGV+TAED
Sbjct: 181 LKNFEALDLGKMDKTNDSGLASYVASQVDRSLSWTDVKWLQTITSLPILVKGVMTAEDTR 240
Query: 239 --VQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALA 296
V++GAAGIIVSNHGARQLDYVPATI LEEVV+ +GR+PVFLDGGVRRGTDVFKALA
Sbjct: 241 LAVESGAAGIIVSNHGARQLDYVPATISCLEEVVREAKGRLPVFLDGGVRRGTDVFKALA 300
Query: 297 LGASGIFIGRPVVYSLAAEGEKGVRRVLEMLREEFELAMALSGCRSLKEITRDHIVTEWD 356
LGASG+FIGRPV++SLA +GE GVR+VL+MLR+E EL MALSGC SL EITR+H++T+ D
Sbjct: 301 LGASGVFIGRPVLFSLAVDGEAGVRKVLQMLRDELELTMALSGCTSLAEITRNHVITDSD 360
|
Photorespiratory enzyme that can exert a strong regulation over photosynthesis, possibly through a feed-back inhibition on Rubisco activase. Not required for oxalate accumulation. Oryza sativa subsp. indica (taxid: 39946) EC: 1 EC: . EC: 1 EC: . EC: 3 EC: . EC: 1 EC: 5 |
Close Homologs in the Non-Redundant Database Detected by BLAST
Original result of BLAST against Nonredundant Database
| GI | Alignment Graph | Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 366 | ||||||
| 147789493 | 371 | hypothetical protein VITISV_005886 [Viti | 0.994 | 0.981 | 0.905 | 0.0 | |
| 189418957 | 369 | glycolate oxidase [Mikania micrantha] | 0.991 | 0.983 | 0.896 | 0.0 | |
| 323650489 | 370 | glycolate oxidase [Mangifera indica] | 1.0 | 0.989 | 0.913 | 0.0 | |
| 297790174 | 369 | hypothetical protein ARALYDRAFT_333142 [ | 0.994 | 0.986 | 0.913 | 0.0 | |
| 304368145 | 371 | glycolate oxidase [Nicotiana benthamiana | 0.994 | 0.981 | 0.903 | 0.0 | |
| 225462096 | 371 | PREDICTED: peroxisomal (S)-2-hydroxy-aci | 0.994 | 0.981 | 0.908 | 0.0 | |
| 224117076 | 369 | predicted protein [Populus trichocarpa] | 0.994 | 0.986 | 0.904 | 0.0 | |
| 224121620 | 369 | predicted protein [Populus trichocarpa] | 0.994 | 0.986 | 0.910 | 0.0 | |
| 359806771 | 371 | peroxisomal (S)-2-hydroxy-acid oxidase G | 0.994 | 0.981 | 0.905 | 0.0 | |
| 366984550 | 367 | glycolate oxidase [Gossypium hirsutum] | 0.989 | 0.986 | 0.904 | 0.0 |
| >gi|147789493|emb|CAN67413.1| hypothetical protein VITISV_005886 [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 685 bits (1767), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 335/370 (90%), Positives = 353/370 (95%), Gaps = 6/370 (1%)
Query: 3 EITNVMEYEAIAKEKLPKMVFDYYASGAEDQWTLQENRNAFSRILFRPRILIDVSKIDMN 62
EITNV EYEAIAK+KLPKMVFDYYASGAEDQWTL +NR+AFS+ILFRPRILIDVSKIDM
Sbjct: 2 EITNVTEYEAIAKQKLPKMVFDYYASGAEDQWTLYQNRHAFSQILFRPRILIDVSKIDMT 61
Query: 63 TTVLGFKISMPIMIAPTAMQKMAHPEGEYATARAASAAGTIMTLSSWSTSSVEEVASTGP 122
TTVLGFKISMPIMIAPTAMQKMAHPEGEYATARAASA GTIMTLSSW+TSSVEEVASTGP
Sbjct: 62 TTVLGFKISMPIMIAPTAMQKMAHPEGEYATARAASATGTIMTLSSWATSSVEEVASTGP 121
Query: 123 GIRFFQLYVYKDRNVVAQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLTLK 182
GIRFFQLYVYKDR+VVAQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLTLK
Sbjct: 122 GIRFFQLYVYKDRHVVAQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLTLK 181
Query: 183 NFQGLDLGKMDEANDSGLAAYVAGQIDRSLSWKDVKWLQTITKLPILVKGVLTAED---- 238
NF+GLDLGKMD+A+DSGLA+YVAGQIDR+LSWKDVKWLQTIT LPILVKGVLTAED
Sbjct: 182 NFEGLDLGKMDKADDSGLASYVAGQIDRTLSWKDVKWLQTITNLPILVKGVLTAEDTRLA 241
Query: 239 VQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALG 298
+QAGAAGIIVSNHGARQLDYVPATIMALEEVVKA QGR+PVFLDGGVRRGTDVFKALALG
Sbjct: 242 IQAGAAGIIVSNHGARQLDYVPATIMALEEVVKAAQGRVPVFLDGGVRRGTDVFKALALG 301
Query: 299 ASGIFIGRPVVYSLAAEGEKGVRRVLEMLREEFELAMALSGCRSLKEITRDHIVTEWDAS 358
ASGIFIGRPVV+SLAAEGE GVR+VL+MLREEFEL MALSGCRSLKEITRDHIVTEW+
Sbjct: 302 ASGIFIGRPVVFSLAAEGEAGVRKVLQMLREEFELTMALSGCRSLKEITRDHIVTEWEVP 361
Query: 359 LP--RPVPRL 366
P RP+PRL
Sbjct: 362 HPGSRPLPRL 371
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|189418957|gb|ACD93720.1| glycolate oxidase [Mikania micrantha] | Back alignment and taxonomy information |
|---|
Score = 680 bits (1755), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 329/367 (89%), Positives = 349/367 (95%), Gaps = 4/367 (1%)
Query: 4 ITNVMEYEAIAKEKLPKMVFDYYASGAEDQWTLQENRNAFSRILFRPRILIDVSKIDMNT 63
+TNV EYEAIAKEKLPKMV+DYYASGAEDQWTL+E+RNAFSRILFRPRILIDVSKI M T
Sbjct: 3 VTNVTEYEAIAKEKLPKMVYDYYASGAEDQWTLEESRNAFSRILFRPRILIDVSKIVMTT 62
Query: 64 TVLGFKISMPIMIAPTAMQKMAHPEGEYATARAASAAGTIMTLSSWSTSSVEEVASTGPG 123
T+LGFKISMPIM+APTAMQKMAHPEGEYATARAAS+AGTIMTLSSW+TSSVEE ASTGPG
Sbjct: 63 TILGFKISMPIMVAPTAMQKMAHPEGEYATARAASSAGTIMTLSSWATSSVEEAASTGPG 122
Query: 124 IRFFQLYVYKDRNVVAQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLTLKN 183
IRFFQLYVYKDRNVVAQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLTLKN
Sbjct: 123 IRFFQLYVYKDRNVVAQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLTLKN 182
Query: 184 FQGLDLGKMDEANDSGLAAYVAGQIDRSLSWKDVKWLQTITKLPILVKGVLTAED----V 239
F+GLDLGKMDEANDSGLA+YVAGQIDR+LSWKDV+WLQTITK+PILVKGV+TAED +
Sbjct: 183 FEGLDLGKMDEANDSGLASYVAGQIDRTLSWKDVQWLQTITKMPILVKGVITAEDTRLAI 242
Query: 240 QAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGA 299
QAGAAGIIVSNHGARQLDYVPATI ALEEVVKA QGR+PVFLDGGVRRGTDVFKALALGA
Sbjct: 243 QAGAAGIIVSNHGARQLDYVPATISALEEVVKAAQGRVPVFLDGGVRRGTDVFKALALGA 302
Query: 300 SGIFIGRPVVYSLAAEGEKGVRRVLEMLREEFELAMALSGCRSLKEITRDHIVTEWDASL 359
+GIFIGRPVV SLAAEGE GVR+VL+MLR+EFEL MALSGC SLKEITRDHIVTEWDA
Sbjct: 303 AGIFIGRPVVLSLAAEGEAGVRKVLQMLRDEFELTMALSGCTSLKEITRDHIVTEWDAPK 362
Query: 360 PRPVPRL 366
RP PRL
Sbjct: 363 ARPAPRL 369
|
Source: Mikania micrantha Species: Mikania micrantha Genus: Mikania Family: Asteraceae Order: Asterales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|323650489|gb|ADX97325.1| glycolate oxidase [Mangifera indica] | Back alignment and taxonomy information |
|---|
Score = 676 bits (1743), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 338/370 (91%), Positives = 355/370 (95%), Gaps = 4/370 (1%)
Query: 1 MGEITNVMEYEAIAKEKLPKMVFDYYASGAEDQWTLQENRNAFSRILFRPRILIDVSKID 60
M EITNVMEYEAIAK+KLPKMVFDYYASGAEDQWTL+ENR AFSRILFRPRILIDVSKID
Sbjct: 1 MEEITNVMEYEAIAKQKLPKMVFDYYASGAEDQWTLRENRFAFSRILFRPRILIDVSKID 60
Query: 61 MNTTVLGFKISMPIMIAPTAMQKMAHPEGEYATARAASAAGTIMTLSSWSTSSVEEVAST 120
M TTVLGFKISMPIMIAPTAMQKMAHPEGEYATARAASAAGTIMTLSSW+TSSVEEVAST
Sbjct: 61 MTTTVLGFKISMPIMIAPTAMQKMAHPEGEYATARAASAAGTIMTLSSWATSSVEEVAST 120
Query: 121 GPGIRFFQLYVYKDRNVVAQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLT 180
GPGIRFFQLYVYKDRNVVAQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLT
Sbjct: 121 GPGIRFFQLYVYKDRNVVAQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLT 180
Query: 181 LKNFQGLDLGKMDEANDSGLAAYVAGQIDRSLSWKDVKWLQTITKLPILVKGVLTAED-- 238
L+NF+GLDLGKMD+ANDSGLA+YVAGQIDRSLSWKDVKWLQTITKLPILVKGVLTAED
Sbjct: 181 LRNFEGLDLGKMDQANDSGLASYVAGQIDRSLSWKDVKWLQTITKLPILVKGVLTAEDAR 240
Query: 239 --VQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALA 296
+QAGAAGIIVSNHGARQLDYVPATIMALEEVVKA+QGR+PVFLDGGVRRGTDVFKALA
Sbjct: 241 LAIQAGAAGIIVSNHGARQLDYVPATIMALEEVVKASQGRVPVFLDGGVRRGTDVFKALA 300
Query: 297 LGASGIFIGRPVVYSLAAEGEKGVRRVLEMLREEFELAMALSGCRSLKEITRDHIVTEWD 356
LGASGIFIGRPVV+SLAA+GE G+R+ L+MLR+EFEL MALSGCRSLKEITRDHIVT+WD
Sbjct: 301 LGASGIFIGRPVVFSLAADGEAGIRKALQMLRDEFELTMALSGCRSLKEITRDHIVTDWD 360
Query: 357 ASLPRPVPRL 366
PR PRL
Sbjct: 361 LPQPRIAPRL 370
|
Source: Mangifera indica Species: Mangifera indica Genus: Mangifera Family: Anacardiaceae Order: Sapindales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|297790174|ref|XP_002862992.1| hypothetical protein ARALYDRAFT_333142 [Arabidopsis lyrata subsp. lyrata] gi|297839705|ref|XP_002887734.1| hypothetical protein ARALYDRAFT_895734 [Arabidopsis lyrata subsp. lyrata] gi|297308786|gb|EFH39251.1| hypothetical protein ARALYDRAFT_333142 [Arabidopsis lyrata subsp. lyrata] gi|297333575|gb|EFH63993.1| hypothetical protein ARALYDRAFT_895734 [Arabidopsis lyrata subsp. lyrata] | Back alignment and taxonomy information |
|---|
Score = 673 bits (1737), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 336/368 (91%), Positives = 354/368 (96%), Gaps = 4/368 (1%)
Query: 3 EITNVMEYEAIAKEKLPKMVFDYYASGAEDQWTLQENRNAFSRILFRPRILIDVSKIDMN 62
EITNV EYEAIAKEKLPKMVFDYYASGAEDQWTLQENRNAFSRILFRPRILIDVSKIDM
Sbjct: 2 EITNVNEYEAIAKEKLPKMVFDYYASGAEDQWTLQENRNAFSRILFRPRILIDVSKIDMT 61
Query: 63 TTVLGFKISMPIMIAPTAMQKMAHPEGEYATARAASAAGTIMTLSSWSTSSVEEVASTGP 122
TTVLGFKISMPIM+APTAMQKMAHPEGEYATARAASAAGTIMTLSSW+TSSVEEVASTGP
Sbjct: 62 TTVLGFKISMPIMVAPTAMQKMAHPEGEYATARAASAAGTIMTLSSWATSSVEEVASTGP 121
Query: 123 GIRFFQLYVYKDRNVVAQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLTLK 182
GIRFFQLYVYKDRNVVAQLVRRAERAGFKAIALTVDTPRLGRRE+DIKNRFTLPP+LTLK
Sbjct: 122 GIRFFQLYVYKDRNVVAQLVRRAERAGFKAIALTVDTPRLGRRESDIKNRFTLPPYLTLK 181
Query: 183 NFQGLDLGKMDEANDSGLAAYVAGQIDRSLSWKDVKWLQTITKLPILVKGVLTAED---- 238
NF+GLDLGKMDEANDSGLA+YVAGQIDR+LSWKDV+WLQTITKLPILVKGVLTAED
Sbjct: 182 NFEGLDLGKMDEANDSGLASYVAGQIDRTLSWKDVQWLQTITKLPILVKGVLTAEDARMA 241
Query: 239 VQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALG 298
VQAGAAGIIVSNHGARQLDYVPATI+ALEEVVKA QG+IPVFLDGGVRRGTDVFKALALG
Sbjct: 242 VQAGAAGIIVSNHGARQLDYVPATIIALEEVVKAAQGKIPVFLDGGVRRGTDVFKALALG 301
Query: 299 ASGIFIGRPVVYSLAAEGEKGVRRVLEMLREEFELAMALSGCRSLKEITRDHIVTEWDAS 358
ASGIFIGRPVV+SLAAEGE GVR+VL+M+REEFEL MALSGC SLKEITR+HI+T+WDA
Sbjct: 302 ASGIFIGRPVVFSLAAEGEAGVRKVLQMMREEFELTMALSGCTSLKEITRNHIITDWDAP 361
Query: 359 LPRPVPRL 366
R VP+L
Sbjct: 362 QARLVPKL 369
|
Source: Arabidopsis lyrata subsp. lyrata Species: Arabidopsis lyrata Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|304368145|gb|ADM26718.1| glycolate oxidase [Nicotiana benthamiana] | Back alignment and taxonomy information |
|---|
Score = 669 bits (1725), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 337/373 (90%), Positives = 355/373 (95%), Gaps = 9/373 (2%)
Query: 1 MGEITNVMEYEAIAKEKLPKMVFDYYASGAEDQWTLQENRNAFSRILFRPRILIDVSKID 60
M E+TNVMEYEAIAK+KLPKMVFDYYASGAEDQWTL ENRNAFSRILFRPRILIDVSKID
Sbjct: 1 MEEVTNVMEYEAIAKKKLPKMVFDYYASGAEDQWTLAENRNAFSRILFRPRILIDVSKID 60
Query: 61 MNTTVLGFKISMPIMIAPTAMQKMAHPEGEYATARAASAAGTIMTLSSWSTSSVEEVAST 120
M+TTVLGFKISMPIMIAPTAMQKMAHPEGEYATARAASAAGTIMTLSSW+TSSVEEVAST
Sbjct: 61 MSTTVLGFKISMPIMIAPTAMQKMAHPEGEYATARAASAAGTIMTLSSWATSSVEEVAST 120
Query: 121 GPGIRFFQLYVYKDRNVVAQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLT 180
GPGIRFFQLYVYKDRNVVAQLVRRAERAGFKAIALTVDTPRLGRREADIKNRF LPPFLT
Sbjct: 121 GPGIRFFQLYVYKDRNVVAQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFVLPPFLT 180
Query: 181 LKNFQGLDLGKMDEANDSGLAAYVAGQIDRSLSWKDVKWLQTITKLPILVKGVLTAED-- 238
LKNF+GLDLGKMD+A+DSGLA+YVAGQIDR+LSWKDV+WLQTIT LPILVKGVLTAED
Sbjct: 181 LKNFEGLDLGKMDQASDSGLASYVAGQIDRTLSWKDVQWLQTITSLPILVKGVLTAEDAR 240
Query: 239 --VQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALA 296
VQAGAAGIIVSNHGARQLDYVP+TIMALEEVVKA QGRIPVFLDGGVRRGTDVFKALA
Sbjct: 241 LAVQAGAAGIIVSNHGARQLDYVPSTIMALEEVVKAAQGRIPVFLDGGVRRGTDVFKALA 300
Query: 297 LGASGIFIGRPVVYSLAAEGEKGVRRVLEMLREEFELAMALSGCRSLKEITRDHIVTEWD 356
LGASGIFIGRPVV+SLAAEGE G+++VL+MLR+EFEL MALSGCRSL EITR+HIVTEWD
Sbjct: 301 LGASGIFIGRPVVFSLAAEGEAGIKKVLQMLRDEFELTMALSGCRSLNEITRNHIVTEWD 360
Query: 357 ASLPR---PVPRL 366
A PR P PRL
Sbjct: 361 A--PRAALPAPRL 371
|
Source: Nicotiana benthamiana Species: Nicotiana benthamiana Genus: Nicotiana Family: Solanaceae Order: Solanales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|225462096|ref|XP_002277249.1| PREDICTED: peroxisomal (S)-2-hydroxy-acid oxidase GLO1 [Vitis vinifera] gi|296086772|emb|CBI32921.3| unnamed protein product [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 668 bits (1723), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 336/370 (90%), Positives = 354/370 (95%), Gaps = 6/370 (1%)
Query: 3 EITNVMEYEAIAKEKLPKMVFDYYASGAEDQWTLQENRNAFSRILFRPRILIDVSKIDMN 62
EITNV EYEAIAK+KLPKMVFDYYASGAEDQWTL +NR+AFS+ILFRPRILIDVSKIDM
Sbjct: 2 EITNVTEYEAIAKQKLPKMVFDYYASGAEDQWTLYQNRHAFSQILFRPRILIDVSKIDMT 61
Query: 63 TTVLGFKISMPIMIAPTAMQKMAHPEGEYATARAASAAGTIMTLSSWSTSSVEEVASTGP 122
TTVLGFKISMPIMIAPTAMQKMAHPEGEYATARAASAAGTIMTLSSW+TSSVEEVASTGP
Sbjct: 62 TTVLGFKISMPIMIAPTAMQKMAHPEGEYATARAASAAGTIMTLSSWATSSVEEVASTGP 121
Query: 123 GIRFFQLYVYKDRNVVAQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLTLK 182
GIRFFQLYVYKDR+VVAQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLTLK
Sbjct: 122 GIRFFQLYVYKDRHVVAQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLTLK 181
Query: 183 NFQGLDLGKMDEANDSGLAAYVAGQIDRSLSWKDVKWLQTITKLPILVKGVLTAED---- 238
NF+GLDLGKMD+A+DSGLA+YVAGQIDR+LSWKDVKWLQTIT LPILVKGVLTAED
Sbjct: 182 NFEGLDLGKMDKADDSGLASYVAGQIDRTLSWKDVKWLQTITNLPILVKGVLTAEDTRLA 241
Query: 239 VQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALG 298
+QAGAAGIIVSNHGARQLDYVPATIMALEEVVKA QGR+PVFLDGGVRRGTDVFKALALG
Sbjct: 242 IQAGAAGIIVSNHGARQLDYVPATIMALEEVVKAAQGRVPVFLDGGVRRGTDVFKALALG 301
Query: 299 ASGIFIGRPVVYSLAAEGEKGVRRVLEMLREEFELAMALSGCRSLKEITRDHIVTEWDAS 358
ASGIFIGRPVV+SLAAEGE GVR+VL+MLREEFEL MALSGCRSLKEITRDHIVTEW+
Sbjct: 302 ASGIFIGRPVVFSLAAEGEAGVRKVLQMLREEFELTMALSGCRSLKEITRDHIVTEWEVP 361
Query: 359 LP--RPVPRL 366
P RP+PRL
Sbjct: 362 PPGSRPLPRL 371
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|224117076|ref|XP_002317470.1| predicted protein [Populus trichocarpa] gi|118489504|gb|ABK96554.1| unknown [Populus trichocarpa x Populus deltoides] gi|222860535|gb|EEE98082.1| predicted protein [Populus trichocarpa] | Back alignment and taxonomy information |
|---|
Score = 666 bits (1719), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 333/368 (90%), Positives = 352/368 (95%), Gaps = 4/368 (1%)
Query: 3 EITNVMEYEAIAKEKLPKMVFDYYASGAEDQWTLQENRNAFSRILFRPRILIDVSKIDMN 62
EITNVMEYEAIAK+KLPKMVFDYYASGAEDQWTL ENRNAFSRILFRPRILIDVSKIDM
Sbjct: 2 EITNVMEYEAIAKQKLPKMVFDYYASGAEDQWTLAENRNAFSRILFRPRILIDVSKIDMA 61
Query: 63 TTVLGFKISMPIMIAPTAMQKMAHPEGEYATARAASAAGTIMTLSSWSTSSVEEVASTGP 122
TTVLGFKISMPIMIAPTAMQKMAHPEGEYATARAASAAGTIMTLSSW+TSSVEEVASTGP
Sbjct: 62 TTVLGFKISMPIMIAPTAMQKMAHPEGEYATARAASAAGTIMTLSSWATSSVEEVASTGP 121
Query: 123 GIRFFQLYVYKDRNVVAQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLTLK 182
GIRFFQLYVYKDRNVVAQLVRRAERAGFKAIALTVDTPRLGRRE+DIKNRF+LPPFLTLK
Sbjct: 122 GIRFFQLYVYKDRNVVAQLVRRAERAGFKAIALTVDTPRLGRRESDIKNRFSLPPFLTLK 181
Query: 183 NFQGLDLGKMDEANDSGLAAYVAGQIDRSLSWKDVKWLQTITKLPILVKGVLTAED---- 238
NF+GLDLGKMD+A+DSGLA+YVAGQIDR+LSWKDV+WLQTIT+LPILVKGVLTAED
Sbjct: 182 NFEGLDLGKMDKADDSGLASYVAGQIDRTLSWKDVEWLQTITRLPILVKGVLTAEDARLS 241
Query: 239 VQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALG 298
VQAGAAGIIVSNHGARQLDYVP+TIMALEEVVKA QGR+PVFLDGGVRRGTDVFKALALG
Sbjct: 242 VQAGAAGIIVSNHGARQLDYVPSTIMALEEVVKAAQGRVPVFLDGGVRRGTDVFKALALG 301
Query: 299 ASGIFIGRPVVYSLAAEGEKGVRRVLEMLREEFELAMALSGCRSLKEITRDHIVTEWDAS 358
ASGIFIGRPVV+SLA+EGE GVR+VL+MLREEFEL MALSGCRSLKEITRDHIV +WD
Sbjct: 302 ASGIFIGRPVVFSLASEGEAGVRKVLQMLREEFELTMALSGCRSLKEITRDHIVADWDHP 361
Query: 359 LPRPVPRL 366
R P+L
Sbjct: 362 RARLAPKL 369
|
Source: Populus trichocarpa Species: Populus trichocarpa Genus: Populus Family: Salicaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|224121620|ref|XP_002330746.1| predicted protein [Populus trichocarpa] gi|118486606|gb|ABK95141.1| unknown [Populus trichocarpa] gi|222872522|gb|EEF09653.1| predicted protein [Populus trichocarpa] | Back alignment and taxonomy information |
|---|
Score = 666 bits (1718), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 335/368 (91%), Positives = 350/368 (95%), Gaps = 4/368 (1%)
Query: 3 EITNVMEYEAIAKEKLPKMVFDYYASGAEDQWTLQENRNAFSRILFRPRILIDVSKIDMN 62
EITNV EYEAIAK+KLPKMV+DYYASGAEDQWTL ENRNAFSRILFRPRILIDVSKIDM
Sbjct: 2 EITNVTEYEAIAKQKLPKMVYDYYASGAEDQWTLAENRNAFSRILFRPRILIDVSKIDMA 61
Query: 63 TTVLGFKISMPIMIAPTAMQKMAHPEGEYATARAASAAGTIMTLSSWSTSSVEEVASTGP 122
TTVLGFKISMPIMIAPTAMQKMAHPEGEYATARAASAAGTIMTLSSW+TSSVEEVASTGP
Sbjct: 62 TTVLGFKISMPIMIAPTAMQKMAHPEGEYATARAASAAGTIMTLSSWATSSVEEVASTGP 121
Query: 123 GIRFFQLYVYKDRNVVAQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLTLK 182
GIRFFQLYVYKDRNVVAQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLTLK
Sbjct: 122 GIRFFQLYVYKDRNVVAQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLTLK 181
Query: 183 NFQGLDLGKMDEANDSGLAAYVAGQIDRSLSWKDVKWLQTITKLPILVKGVLTAED---- 238
NF+GLDLGKMD+A DSGLA+YVAGQIDR+LSWKDV+WLQTITKLPILVKGVLTAED
Sbjct: 182 NFEGLDLGKMDKAADSGLASYVAGQIDRTLSWKDVEWLQTITKLPILVKGVLTAEDARLS 241
Query: 239 VQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALG 298
VQAGAAGIIVSNHGARQLDYVP+TIMALEEVVKA QGR+PVFLDGGVRRGTDVFKALALG
Sbjct: 242 VQAGAAGIIVSNHGARQLDYVPSTIMALEEVVKAAQGRVPVFLDGGVRRGTDVFKALALG 301
Query: 299 ASGIFIGRPVVYSLAAEGEKGVRRVLEMLREEFELAMALSGCRSLKEITRDHIVTEWDAS 358
ASGIFIGRPVV+SLA+EGE GVR+VL+MLREEFEL MALSGCRSLKEITR HIV +WD
Sbjct: 302 ASGIFIGRPVVFSLASEGETGVRKVLQMLREEFELTMALSGCRSLKEITRAHIVADWDHP 361
Query: 359 LPRPVPRL 366
L R PRL
Sbjct: 362 LNRLAPRL 369
|
Source: Populus trichocarpa Species: Populus trichocarpa Genus: Populus Family: Salicaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|359806771|ref|NP_001241302.1| peroxisomal (S)-2-hydroxy-acid oxidase GLO1-like [Glycine max] gi|167961875|dbj|BAG09382.1| peroxisomal glycolate oxidase [Glycine max] | Back alignment and taxonomy information |
|---|
Score = 665 bits (1716), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 335/370 (90%), Positives = 353/370 (95%), Gaps = 6/370 (1%)
Query: 3 EITNVMEYEAIAKEKLPKMVFDYYASGAEDQWTLQENRNAFSRILFRPRILIDVSKIDMN 62
EITNV EYEAIAK+KLPKMVFDYYASGAEDQWTLQENRNAFSRILFRPRILIDVSKID+
Sbjct: 2 EITNVSEYEAIAKQKLPKMVFDYYASGAEDQWTLQENRNAFSRILFRPRILIDVSKIDIT 61
Query: 63 TTVLGFKISMPIMIAPTAMQKMAHPEGEYATARAASAAGTIMTLSSWSTSSVEEVASTGP 122
TTVLGFKISMPIM+APTAMQKMAHPEGEYATARAASAAGTIMTLSSW+TSSVEEVASTGP
Sbjct: 62 TTVLGFKISMPIMLAPTAMQKMAHPEGEYATARAASAAGTIMTLSSWATSSVEEVASTGP 121
Query: 123 GIRFFQLYVYKDRNVVAQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLTLK 182
GIRFFQLYVYKDRNVVAQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLTLK
Sbjct: 122 GIRFFQLYVYKDRNVVAQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLTLK 181
Query: 183 NFQGLDLGKMDEANDSGLAAYVAGQIDRSLSWKDVKWLQTITKLPILVKGVLTAED---- 238
NF+GLDLGKMD+A+DSGLA+YVAGQIDR+LSWKDVKWLQTITKLPILVKGVLTAED
Sbjct: 182 NFEGLDLGKMDKADDSGLASYVAGQIDRTLSWKDVKWLQTITKLPILVKGVLTAEDTRIA 241
Query: 239 VQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALG 298
VQ+GAAGIIVSNHGARQLDYVPATI ALEEVVKA +GR+PVFLDGGVRRGTDVFKALALG
Sbjct: 242 VQSGAAGIIVSNHGARQLDYVPATISALEEVVKAAEGRVPVFLDGGVRRGTDVFKALALG 301
Query: 299 ASGIFIGRPVVYSLAAEGEKGVRRVLEMLREEFELAMALSGCRSLKEITRDHIVTEWDA- 357
ASGIFIGRPVV+SLAAEGE GVR VL MLREEFEL MALSGC SLK+ITRDHIVT+WD
Sbjct: 302 ASGIFIGRPVVFSLAAEGEAGVRNVLRMLREEFELTMALSGCTSLKDITRDHIVTDWDQP 361
Query: 358 -SLPRPVPRL 366
++PR +PRL
Sbjct: 362 RTIPRALPRL 371
|
Source: Glycine max Species: Glycine max Genus: Glycine Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|366984550|gb|AEX09184.1| glycolate oxidase [Gossypium hirsutum] | Back alignment and taxonomy information |
|---|
Score = 664 bits (1714), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 333/368 (90%), Positives = 351/368 (95%), Gaps = 6/368 (1%)
Query: 3 EITNVMEYEAIAKEKLPKMVFDYYASGAEDQWTLQENRNAFSRILFRPRILIDVSKIDMN 62
EITN+ EYEAIAKEKLPKMV+DYYASGAEDQWTL+ENRNAFSRILFRPRILIDVSKIDM
Sbjct: 2 EITNITEYEAIAKEKLPKMVYDYYASGAEDQWTLKENRNAFSRILFRPRILIDVSKIDMT 61
Query: 63 TTVLGFKISMPIMIAPTAMQKMAHPEGEYATARAASAAGTIMTLSSWSTSSVEEVASTGP 122
TTVLGFKISMPIMIAPTAMQKMAHPEGEYATARAASAAGTIMTLSSW+TSSVE+VASTGP
Sbjct: 62 TTVLGFKISMPIMIAPTAMQKMAHPEGEYATARAASAAGTIMTLSSWATSSVEDVASTGP 121
Query: 123 GIRFFQLYVYKDRNVVAQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLTLK 182
GIRFFQLYVYKDRNVVAQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLTLK
Sbjct: 122 GIRFFQLYVYKDRNVVAQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLTLK 181
Query: 183 NFQGLDLGKMDEANDSGLAAYVAGQIDRSLSWKDVKWLQTITKLPILVKGVLTAED---- 238
NF+GL+LGKMD+ +DSGLA+YVAGQIDRSLSWKDVKWLQTIT LPILVKGVL AED
Sbjct: 182 NFEGLNLGKMDKTDDSGLASYVAGQIDRSLSWKDVKWLQTITSLPILVKGVLNAEDARLA 241
Query: 239 VQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALG 298
+QAGAAGIIVSNHGARQLDYVPATIMALEEVVKA QGR+PVFLDGGVRRGTDVFKALALG
Sbjct: 242 IQAGAAGIIVSNHGARQLDYVPATIMALEEVVKAAQGRVPVFLDGGVRRGTDVFKALALG 301
Query: 299 ASGIFIGRPVVYSLAAEGEKGVRRVLEMLREEFELAMALSGCRSLKEITRDHIVTEWDAS 358
ASGIFIGRPVV+SLAAEGE GVR+VL+MLR+EFEL MALSGCRSLKEITR+HIV +WD
Sbjct: 302 ASGIFIGRPVVFSLAAEGEAGVRKVLQMLRDEFELTMALSGCRSLKEITRNHIVADWDQ- 360
Query: 359 LPRPVPRL 366
PR VPRL
Sbjct: 361 -PRVVPRL 367
|
Source: Gossypium hirsutum Species: Gossypium hirsutum Genus: Gossypium Family: Malvaceae Order: Malvales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST
Original result of BLAST against Gene Ontology (AMIGO)
| ID |
Alignment graph |
Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 366 | ||||||
| TAIR|locus:2091642 | 367 | GOX1 "glycolate oxidase 1" [Ar | 0.989 | 0.986 | 0.872 | 2.2e-167 | |
| UNIPROTKB|B8AKX6 | 369 | GLO1 "Peroxisomal (S)-2-hydrox | 0.997 | 0.989 | 0.824 | 2e-159 | |
| UNIPROTKB|Q10CE4 | 369 | GLO1 "Peroxisomal (S)-2-hydrox | 0.997 | 0.989 | 0.824 | 2e-159 | |
| UNIPROTKB|B8B7C5 | 369 | GLO5 "Peroxisomal (S)-2-hydrox | 0.972 | 0.964 | 0.836 | 1.1e-158 | |
| UNIPROTKB|Q6YT73 | 369 | GLO5 "Peroxisomal (S)-2-hydrox | 0.972 | 0.964 | 0.836 | 1.1e-158 | |
| TAIR|locus:2124499 | 368 | GOX3 "glycolate oxidase 3" [Ar | 0.967 | 0.961 | 0.826 | 8.9e-157 | |
| UNIPROTKB|B8AUI3 | 367 | GLO3 "Peroxisomal (S)-2-hydrox | 0.964 | 0.961 | 0.792 | 3.8e-149 | |
| UNIPROTKB|Q7FAS1 | 367 | GLO3 "Peroxisomal (S)-2-hydrox | 0.964 | 0.961 | 0.792 | 3.8e-149 | |
| UNIPROTKB|Q01KC2 | 368 | GLO2 "Peroxisomal (S)-2-hydrox | 0.972 | 0.967 | 0.683 | 4.4e-132 | |
| UNIPROTKB|Q7XPR4 | 368 | GLO2 "Peroxisomal (S)-2-hydrox | 0.972 | 0.967 | 0.683 | 4.4e-132 |
| TAIR|locus:2091642 GOX1 "glycolate oxidase 1" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1628 (578.1 bits), Expect = 2.2e-167, P = 2.2e-167
Identities = 321/368 (87%), Positives = 341/368 (92%)
Query: 3 EITNVMEYEAIAKEKLPKMVFDYYASGAEDQWTLQENRNAFSRILFRPRILIDVSKIDMN 62
EITNV EY+AIAK+KLPKMV+DYYASGAEDQWTLQENRNAF+RILFRPRILIDVSKIDM
Sbjct: 2 EITNVTEYDAIAKQKLPKMVYDYYASGAEDQWTLQENRNAFARILFRPRILIDVSKIDMT 61
Query: 63 TTVLGFKISMPIMIAPTAMQKMAHPEGEYXXXXXXXXXGTIMTLSSWSTSSVEEVASTGP 122
TTVLGFKISMPIM+APTAMQKMAHP+GEY GTIMTLSSW+TSSVEEVASTGP
Sbjct: 62 TTVLGFKISMPIMVAPTAMQKMAHPDGEYATARAASAAGTIMTLSSWATSSVEEVASTGP 121
Query: 123 GIRFFQLYVYKDRNVVAQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLTLK 182
GIRFFQLYVYK+RNVV QLVRRAERAGFKAIALTVDTPRLGRRE+DIKNRFTLPP LTLK
Sbjct: 122 GIRFFQLYVYKNRNVVEQLVRRAERAGFKAIALTVDTPRLGRRESDIKNRFTLPPNLTLK 181
Query: 183 NFQGLDLGKMDEANDSGLAAYVAGQIDRSLSWKDVKWLQTITKLPILVKGVLTAED---- 238
NF+GLDLGKMDEANDSGLA+YVAGQIDR+LSWKDV+WLQTITKLPILVKGVLT ED
Sbjct: 182 NFEGLDLGKMDEANDSGLASYVAGQIDRTLSWKDVQWLQTITKLPILVKGVLTGEDARIA 241
Query: 239 VQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALG 298
+QAGAAGIIVSNHGARQLDYVPATI ALEEVVKATQGRIPVFLDGGVRRGTDVFKALALG
Sbjct: 242 IQAGAAGIIVSNHGARQLDYVPATISALEEVVKATQGRIPVFLDGGVRRGTDVFKALALG 301
Query: 299 ASGIFIGRPVVYSLAAEGEKGVRRVLEMLREEFELAMALSGCRSLKEITRDHIVTEWDAS 358
ASGIFIGRPVV+SLAAEGE GVR+VL+MLR+EFEL MALSGCRSLKEI+R+HI TEWD
Sbjct: 302 ASGIFIGRPVVFSLAAEGEAGVRKVLQMLRDEFELTMALSGCRSLKEISRNHITTEWDT- 360
Query: 359 LPRPVPRL 366
PRP RL
Sbjct: 361 -PRPSARL 367
|
|
| UNIPROTKB|B8AKX6 GLO1 "Peroxisomal (S)-2-hydroxy-acid oxidase GLO1" [Oryza sativa Indica Group (taxid:39946)] | Back alignment and assigned GO terms |
|---|
Score = 1553 (551.7 bits), Expect = 2.0e-159, P = 2.0e-159
Identities = 305/370 (82%), Positives = 333/370 (90%)
Query: 1 MGEITNVMEYEAIAKEKLPKMVFDYYASGAEDQWTLQENRNAFSRILFRPRILIDVSKID 60
MGEITNVMEY+AIAK+KLPKM++DYYASGAED+WTL+ENR AFSRILFRPRILIDVSKID
Sbjct: 1 MGEITNVMEYQAIAKQKLPKMIYDYYASGAEDEWTLKENREAFSRILFRPRILIDVSKID 60
Query: 61 MNTTVLGFKISMPIMIAPTAMQKMAHPEGEYXXXXXXXXXGTIMTLSSWSTSSVEEVAST 120
M+ TVLGFKISMPIMIAP+AMQKMAHP+GEY GTIMTLSSW+TSSVEEVAST
Sbjct: 61 MSATVLGFKISMPIMIAPSAMQKMAHPDGEYATARAASAAGTIMTLSSWATSSVEEVAST 120
Query: 121 GPGIRFFQLYVYKDRNVVAQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLT 180
GPGIRFFQLYVYKDRNVV QLVRRAERAGFKAIALTVDTPRLGRREADIKNRF LPP+LT
Sbjct: 121 GPGIRFFQLYVYKDRNVVEQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFVLPPYLT 180
Query: 181 LKNFQGLDLGKMDEANDSGLAAYVAGQIDRSLSWKDVKWLQTITKLPILVKGVLTAED-- 238
LKNF+GLDL +MD++NDSGLA+YVAGQIDR+LSWKDVKWLQ+IT LPILVKGV+TAED
Sbjct: 181 LKNFEGLDLAEMDKSNDSGLASYVAGQIDRTLSWKDVKWLQSITSLPILVKGVITAEDAR 240
Query: 239 --VQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALA 296
V +GAAGIIVSNHGARQLDYVPATI ALEEVV A GRIPV+LDGGVRRGTDVFKALA
Sbjct: 241 LAVHSGAAGIIVSNHGARQLDYVPATISALEEVVTAAAGRIPVYLDGGVRRGTDVFKALA 300
Query: 297 LGASGIFIGRPVVYSLAAEGEKGVRRVLEMLREEFELAMALSGCRSLKEITRDHIVTEWD 356
LGA+G+FIGRPVV++LAAEGE GVR VL M+REEFEL MALSGC SL +ITR HI T+ D
Sbjct: 301 LGAAGVFIGRPVVFALAAEGEAGVRNVLRMMREEFELTMALSGCTSLADITRAHIYTDAD 360
Query: 357 ASLPRPVPRL 366
L RP PRL
Sbjct: 361 R-LARPFPRL 369
|
|
| UNIPROTKB|Q10CE4 GLO1 "Peroxisomal (S)-2-hydroxy-acid oxidase GLO1" [Oryza sativa Japonica Group (taxid:39947)] | Back alignment and assigned GO terms |
|---|
Score = 1553 (551.7 bits), Expect = 2.0e-159, P = 2.0e-159
Identities = 305/370 (82%), Positives = 333/370 (90%)
Query: 1 MGEITNVMEYEAIAKEKLPKMVFDYYASGAEDQWTLQENRNAFSRILFRPRILIDVSKID 60
MGEITNVMEY+AIAK+KLPKM++DYYASGAED+WTL+ENR AFSRILFRPRILIDVSKID
Sbjct: 1 MGEITNVMEYQAIAKQKLPKMIYDYYASGAEDEWTLKENREAFSRILFRPRILIDVSKID 60
Query: 61 MNTTVLGFKISMPIMIAPTAMQKMAHPEGEYXXXXXXXXXGTIMTLSSWSTSSVEEVAST 120
M+ TVLGFKISMPIMIAP+AMQKMAHP+GEY GTIMTLSSW+TSSVEEVAST
Sbjct: 61 MSATVLGFKISMPIMIAPSAMQKMAHPDGEYATARAASAAGTIMTLSSWATSSVEEVAST 120
Query: 121 GPGIRFFQLYVYKDRNVVAQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLT 180
GPGIRFFQLYVYKDRNVV QLVRRAERAGFKAIALTVDTPRLGRREADIKNRF LPP+LT
Sbjct: 121 GPGIRFFQLYVYKDRNVVEQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFVLPPYLT 180
Query: 181 LKNFQGLDLGKMDEANDSGLAAYVAGQIDRSLSWKDVKWLQTITKLPILVKGVLTAED-- 238
LKNF+GLDL +MD++NDSGLA+YVAGQIDR+LSWKDVKWLQ+IT LPILVKGV+TAED
Sbjct: 181 LKNFEGLDLAEMDKSNDSGLASYVAGQIDRTLSWKDVKWLQSITSLPILVKGVITAEDAR 240
Query: 239 --VQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALA 296
V +GAAGIIVSNHGARQLDYVPATI ALEEVV A GRIPV+LDGGVRRGTDVFKALA
Sbjct: 241 LAVHSGAAGIIVSNHGARQLDYVPATISALEEVVTAAAGRIPVYLDGGVRRGTDVFKALA 300
Query: 297 LGASGIFIGRPVVYSLAAEGEKGVRRVLEMLREEFELAMALSGCRSLKEITRDHIVTEWD 356
LGA+G+FIGRPVV++LAAEGE GVR VL M+REEFEL MALSGC SL +ITR HI T+ D
Sbjct: 301 LGAAGVFIGRPVVFALAAEGEAGVRNVLRMMREEFELTMALSGCTSLADITRAHIYTDAD 360
Query: 357 ASLPRPVPRL 366
L RP PRL
Sbjct: 361 R-LARPFPRL 369
|
|
| UNIPROTKB|B8B7C5 GLO5 "Peroxisomal (S)-2-hydroxy-acid oxidase GLO5" [Oryza sativa Indica Group (taxid:39946)] | Back alignment and assigned GO terms |
|---|
Score = 1546 (549.3 bits), Expect = 1.1e-158, P = 1.1e-158
Identities = 301/360 (83%), Positives = 330/360 (91%)
Query: 1 MGEITNVMEYEAIAKEKLPKMVFDYYASGAEDQWTLQENRNAFSRILFRPRILIDVSKID 60
MGEITNV EY+AIAK+KLPKM++DYYASGAED+WTLQENR AF+RILFRPRILIDVSKID
Sbjct: 1 MGEITNVTEYQAIAKQKLPKMIYDYYASGAEDEWTLQENREAFARILFRPRILIDVSKID 60
Query: 61 MNTTVLGFKISMPIMIAPTAMQKMAHPEGEYXXXXXXXXXGTIMTLSSWSTSSVEEVAST 120
M TTVLGFKISMPIMIAP+AMQKMAHP+GEY GTIMTLSSW+TSSVEEVAST
Sbjct: 61 MATTVLGFKISMPIMIAPSAMQKMAHPDGEYATARAASAAGTIMTLSSWATSSVEEVAST 120
Query: 121 GPGIRFFQLYVYKDRNVVAQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLT 180
GPGIRFFQLYVYKDR VV QLVRRAERAGFKAIALTVDTPRLGRREADIKNRF LPPFLT
Sbjct: 121 GPGIRFFQLYVYKDRRVVEQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFVLPPFLT 180
Query: 181 LKNFQGLDLGKMDEANDSGLAAYVAGQIDRSLSWKDVKWLQTITKLPILVKGVLTAED-- 238
LKNF+GL+LGKMD+A+DSGLA+YVAGQIDR+LSWKDVKWLQTIT LPILVKGV+TAED
Sbjct: 181 LKNFEGLELGKMDQASDSGLASYVAGQIDRTLSWKDVKWLQTITTLPILVKGVITAEDTR 240
Query: 239 --VQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALA 296
V+ GAAGIIVSNHGARQLDYVPATI ALEEVVKA +G++PVFLDGGVRRGTDVFKALA
Sbjct: 241 LAVENGAAGIIVSNHGARQLDYVPATISALEEVVKAARGQLPVFLDGGVRRGTDVFKALA 300
Query: 297 LGASGIFIGRPVVYSLAAEGEKGVRRVLEMLREEFELAMALSGCRSLKEITRDHIVTEWD 356
LGA+G+FIGRPVV+SLAA GE GVR VL+MLR+EFEL MALSGC SL +ITR+H++TE D
Sbjct: 301 LGAAGVFIGRPVVFSLAAAGEAGVRNVLQMLRDEFELTMALSGCTSLADITRNHVITEAD 360
|
|
| UNIPROTKB|Q6YT73 GLO5 "Peroxisomal (S)-2-hydroxy-acid oxidase GLO5" [Oryza sativa Japonica Group (taxid:39947)] | Back alignment and assigned GO terms |
|---|
Score = 1546 (549.3 bits), Expect = 1.1e-158, P = 1.1e-158
Identities = 301/360 (83%), Positives = 330/360 (91%)
Query: 1 MGEITNVMEYEAIAKEKLPKMVFDYYASGAEDQWTLQENRNAFSRILFRPRILIDVSKID 60
MGEITNV EY+AIAK+KLPKM++DYYASGAED+WTLQENR AF+RILFRPRILIDVSKID
Sbjct: 1 MGEITNVTEYQAIAKQKLPKMIYDYYASGAEDEWTLQENREAFARILFRPRILIDVSKID 60
Query: 61 MNTTVLGFKISMPIMIAPTAMQKMAHPEGEYXXXXXXXXXGTIMTLSSWSTSSVEEVAST 120
M TTVLGFKISMPIMIAP+AMQKMAHP+GEY GTIMTLSSW+TSSVEEVAST
Sbjct: 61 MATTVLGFKISMPIMIAPSAMQKMAHPDGEYATARAASAAGTIMTLSSWATSSVEEVAST 120
Query: 121 GPGIRFFQLYVYKDRNVVAQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLT 180
GPGIRFFQLYVYKDR VV QLVRRAERAGFKAIALTVDTPRLGRREADIKNRF LPPFLT
Sbjct: 121 GPGIRFFQLYVYKDRRVVEQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFVLPPFLT 180
Query: 181 LKNFQGLDLGKMDEANDSGLAAYVAGQIDRSLSWKDVKWLQTITKLPILVKGVLTAED-- 238
LKNF+GL+LGKMD+A+DSGLA+YVAGQIDR+LSWKDVKWLQTIT LPILVKGV+TAED
Sbjct: 181 LKNFEGLELGKMDQASDSGLASYVAGQIDRTLSWKDVKWLQTITTLPILVKGVITAEDTR 240
Query: 239 --VQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALA 296
V+ GAAGIIVSNHGARQLDYVPATI ALEEVVKA +G++PVFLDGGVRRGTDVFKALA
Sbjct: 241 LAVENGAAGIIVSNHGARQLDYVPATISALEEVVKAARGQLPVFLDGGVRRGTDVFKALA 300
Query: 297 LGASGIFIGRPVVYSLAAEGEKGVRRVLEMLREEFELAMALSGCRSLKEITRDHIVTEWD 356
LGA+G+FIGRPVV+SLAA GE GVR VL+MLR+EFEL MALSGC SL +ITR+H++TE D
Sbjct: 301 LGAAGVFIGRPVVFSLAAAGEAGVRNVLQMLRDEFELTMALSGCTSLADITRNHVITEAD 360
|
|
| TAIR|locus:2124499 GOX3 "glycolate oxidase 3" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1528 (542.9 bits), Expect = 8.9e-157, P = 8.9e-157
Identities = 296/358 (82%), Positives = 327/358 (91%)
Query: 3 EITNVMEYEAIAKEKLPKMVFDYYASGAEDQWTLQENRNAFSRILFRPRILIDVSKIDMN 62
EITNVMEYE IAKEKLPKMV+DYYASGAEDQWTLQENRNAFSRILFRPRILIDVSKID++
Sbjct: 2 EITNVMEYEKIAKEKLPKMVYDYYASGAEDQWTLQENRNAFSRILFRPRILIDVSKIDVS 61
Query: 63 TTVLGFKISMPIMIAPTAMQKMAHPEGEYXXXXXXXXXGTIMTLSSWSTSSVEEVASTGP 122
TTVLGF ISMPIMIAPTAMQKMAHP+GE GTIMTLSSW+T SVEEVASTGP
Sbjct: 62 TTVLGFNISMPIMIAPTAMQKMAHPDGELATARATSAAGTIMTLSSWATCSVEEVASTGP 121
Query: 123 GIRFFQLYVYKDRNVVAQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLTLK 182
GIRFFQLYVYKDRNVV QLV+RAE AGFKAIALTVDTPRLGRRE+DIKNRF LP LTLK
Sbjct: 122 GIRFFQLYVYKDRNVVIQLVKRAEEAGFKAIALTVDTPRLGRRESDIKNRFALPRGLTLK 181
Query: 183 NFQGLDLGKMDEANDSGLAAYVAGQIDRSLSWKDVKWLQTITKLPILVKGVLTAED---- 238
NF+GLDLGK+D+ NDSGLA+YVAGQ+D+SLSWKD+KWLQ+IT LPILVKGV+TAED
Sbjct: 182 NFEGLDLGKIDKTNDSGLASYVAGQVDQSLSWKDIKWLQSITSLPILVKGVITAEDARIA 241
Query: 239 VQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALG 298
V+ GAAGIIVSNHGARQLDYVPATI+ALEEVVKA +GRIPVFLDGGVRRGTDVFKALALG
Sbjct: 242 VEYGAAGIIVSNHGARQLDYVPATIVALEEVVKAVEGRIPVFLDGGVRRGTDVFKALALG 301
Query: 299 ASGIFIGRPVVYSLAAEGEKGVRRVLEMLREEFELAMALSGCRSLKEITRDHIVTEWD 356
ASG+F+GRP ++SLAA+GE GVR++L+MLR+EFEL MALSGCRSL+EI+R HI T+WD
Sbjct: 302 ASGVFVGRPSLFSLAADGEAGVRKMLQMLRDEFELTMALSGCRSLREISRTHIKTDWD 359
|
|
| UNIPROTKB|B8AUI3 GLO3 "Peroxisomal (S)-2-hydroxy-acid oxidase GLO3" [Oryza sativa Indica Group (taxid:39946)] | Back alignment and assigned GO terms |
|---|
Score = 1456 (517.6 bits), Expect = 3.8e-149, P = 3.8e-149
Identities = 283/357 (79%), Positives = 313/357 (87%)
Query: 4 ITNVMEYEAIAKEKLPKMVFDYYASGAEDQWTLQENRNAFSRILFRPRILIDVSKIDMNT 63
ITNV EYE +AK+KLPKM++DYYASGAEDQWTL+ENR AFSRILFRPRILIDVS+I+M T
Sbjct: 4 ITNVSEYEQLAKQKLPKMIYDYYASGAEDQWTLKENREAFSRILFRPRILIDVSRINMAT 63
Query: 64 TVLGFKISMPIMIAPTAMQKMAHPEGEYXXXXXXXXXGTIMTLSSWSTSSVEEVASTGPG 123
VLGF ISMPIMIAP+AMQKMAHPEGE GTIMTLSSWSTSSVEEV S PG
Sbjct: 64 NVLGFNISMPIMIAPSAMQKMAHPEGELATARAASAAGTIMTLSSWSTSSVEEVNSAAPG 123
Query: 124 IRFFQLYVYKDRNVVAQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLTLKN 183
IRFFQLYVYKDRN+V QLVRRAE AGFKAIALTVDTPRLGRREADIKNRF LPP L LKN
Sbjct: 124 IRFFQLYVYKDRNIVRQLVRRAELAGFKAIALTVDTPRLGRREADIKNRFNLPPHLVLKN 183
Query: 184 FQGLDLGKMDEANDSGLAAYVAGQIDRSLSWKDVKWLQTITKLPILVKGVLTAED----V 239
F+ LDLGKMD+ NDSGLA+YVA Q+DRSLSW DVKWLQTIT LPILVKGV+TAED V
Sbjct: 184 FEALDLGKMDKTNDSGLASYVASQVDRSLSWTDVKWLQTITSLPILVKGVMTAEDTRLAV 243
Query: 240 QAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGA 299
++GAAGIIVSNHGARQLDYVPATI LEEVV+ +GR+PVFLDGGVRRGTDVFKALALGA
Sbjct: 244 ESGAAGIIVSNHGARQLDYVPATISCLEEVVREAKGRLPVFLDGGVRRGTDVFKALALGA 303
Query: 300 SGIFIGRPVVYSLAAEGEKGVRRVLEMLREEFELAMALSGCRSLKEITRDHIVTEWD 356
SG+FIGRPV++SLA +GE GVR+VL+MLR+E EL MALSGC SL EITR+H++T+ D
Sbjct: 304 SGVFIGRPVLFSLAVDGEAGVRKVLQMLRDELELTMALSGCTSLAEITRNHVITDSD 360
|
|
| UNIPROTKB|Q7FAS1 GLO3 "Peroxisomal (S)-2-hydroxy-acid oxidase GLO3" [Oryza sativa Japonica Group (taxid:39947)] | Back alignment and assigned GO terms |
|---|
Score = 1456 (517.6 bits), Expect = 3.8e-149, P = 3.8e-149
Identities = 283/357 (79%), Positives = 313/357 (87%)
Query: 4 ITNVMEYEAIAKEKLPKMVFDYYASGAEDQWTLQENRNAFSRILFRPRILIDVSKIDMNT 63
ITNV EYE +AK+KLPKM++DYYASGAEDQWTL+ENR AFSRILFRPRILIDVS+I+M T
Sbjct: 4 ITNVSEYEQLAKQKLPKMIYDYYASGAEDQWTLKENREAFSRILFRPRILIDVSRINMAT 63
Query: 64 TVLGFKISMPIMIAPTAMQKMAHPEGEYXXXXXXXXXGTIMTLSSWSTSSVEEVASTGPG 123
VLGF ISMPIMIAP+AMQKMAHPEGE GTIMTLSSWSTSSVEEV S PG
Sbjct: 64 NVLGFNISMPIMIAPSAMQKMAHPEGELATARAASAAGTIMTLSSWSTSSVEEVNSAAPG 123
Query: 124 IRFFQLYVYKDRNVVAQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLTLKN 183
IRFFQLYVYKDRN+V QLVRRAE AGFKAIALTVDTPRLGRREADIKNRF LPP L LKN
Sbjct: 124 IRFFQLYVYKDRNIVRQLVRRAELAGFKAIALTVDTPRLGRREADIKNRFNLPPHLVLKN 183
Query: 184 FQGLDLGKMDEANDSGLAAYVAGQIDRSLSWKDVKWLQTITKLPILVKGVLTAED----V 239
F+ LDLGKMD+ NDSGLA+YVA Q+DRSLSW DVKWLQTIT LPILVKGV+TAED V
Sbjct: 184 FEALDLGKMDKTNDSGLASYVASQVDRSLSWTDVKWLQTITSLPILVKGVMTAEDTRLAV 243
Query: 240 QAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGA 299
++GAAGIIVSNHGARQLDYVPATI LEEVV+ +GR+PVFLDGGVRRGTDVFKALALGA
Sbjct: 244 ESGAAGIIVSNHGARQLDYVPATISCLEEVVREAKGRLPVFLDGGVRRGTDVFKALALGA 303
Query: 300 SGIFIGRPVVYSLAAEGEKGVRRVLEMLREEFELAMALSGCRSLKEITRDHIVTEWD 356
SG+FIGRPV++SLA +GE GVR+VL+MLR+E EL MALSGC SL EITR+H++T+ D
Sbjct: 304 SGVFIGRPVLFSLAVDGEAGVRKVLQMLRDELELTMALSGCTSLAEITRNHVITDSD 360
|
|
| UNIPROTKB|Q01KC2 GLO2 "Peroxisomal (S)-2-hydroxy-acid oxidase GLO2" [Oryza sativa Indica Group (taxid:39946)] | Back alignment and assigned GO terms |
|---|
Score = 1295 (460.9 bits), Expect = 4.4e-132, P = 4.4e-132
Identities = 246/360 (68%), Positives = 293/360 (81%)
Query: 1 MGEITNVMEYEAIAKEKLPKMVFDYYASGAEDQWTLQENRNAFSRILFRPRILIDVSKID 60
M +TNV EYE +AK KLPKMV+D+YA AEDQWTL+EN AFSRILF+P +L+DVS ID
Sbjct: 1 MALVTNVCEYEELAKHKLPKMVYDFYAVDAEDQWTLRENSEAFSRILFQPVVLVDVSCID 60
Query: 61 MNTTVLGFKISMPIMIAPTAMQKMAHPEGEYXXXXXXXXXGTIMTLSSWSTSSVEEVAST 120
M+ +VLG+ ISMPIMIAPTA+ K+AHPEGE TIMTLSSWS+ S+EEV
Sbjct: 61 MSMSVLGYNISMPIMIAPTALHKLAHPEGELATARAAAAAETIMTLSSWSSCSIEEVNLA 120
Query: 121 GPGIRFFQLYVYKDRNVVAQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLT 180
GPG+RFFQL +YKDRN+V QL++RAE+AG+KAI LTVD P LGRREAD+KNRFTLP +
Sbjct: 121 GPGVRFFQLSIYKDRNLVQQLIQRAEKAGYKAIVLTVDAPWLGRREADVKNRFTLPQNVM 180
Query: 181 LKNFQGLDLGKMDEANDSGLAAYVAGQIDRSLSWKDVKWLQTITKLPILVKGVLTAED-- 238
LK F+GLD GK+DE N SGLAAYVA QIDRS SWKD+KWLQT+T LP+LVKG++TA+D
Sbjct: 181 LKIFEGLDQGKIDETNGSGLAAYVASQIDRSFSWKDIKWLQTVTSLPVLVKGIITAQDTR 240
Query: 239 --VQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALA 296
++ GAAGII+SNHG RQLDY+PATI LEEVV+ GR+PVF+D G RRGTDVFKALA
Sbjct: 241 IAIEYGAAGIIMSNHGGRQLDYLPATISCLEEVVREANGRVPVFIDSGFRRGTDVFKALA 300
Query: 297 LGASGIFIGRPVVYSLAAEGEKGVRRVLEMLREEFELAMALSGCRSLKEITRDHIVTEWD 356
LGASG+FIGRPV++SLA +GE GVR L MLR+E E+ MALSGC S+KEITR H+VTE D
Sbjct: 301 LGASGVFIGRPVLFSLAIDGEAGVRNALRMLRDELEITMALSGCTSVKEITRGHVVTESD 360
|
|
| UNIPROTKB|Q7XPR4 GLO2 "Peroxisomal (S)-2-hydroxy-acid oxidase GLO2" [Oryza sativa Japonica Group (taxid:39947)] | Back alignment and assigned GO terms |
|---|
Score = 1295 (460.9 bits), Expect = 4.4e-132, P = 4.4e-132
Identities = 246/360 (68%), Positives = 293/360 (81%)
Query: 1 MGEITNVMEYEAIAKEKLPKMVFDYYASGAEDQWTLQENRNAFSRILFRPRILIDVSKID 60
M +TNV EYE +AK KLPKMV+D+YA AEDQWTL+EN AFSRILF+P +L+DVS ID
Sbjct: 1 MALVTNVCEYEELAKHKLPKMVYDFYAVDAEDQWTLRENSEAFSRILFQPVVLVDVSCID 60
Query: 61 MNTTVLGFKISMPIMIAPTAMQKMAHPEGEYXXXXXXXXXGTIMTLSSWSTSSVEEVAST 120
M+ +VLG+ ISMPIMIAPTA+ K+AHPEGE TIMTLSSWS+ S+EEV
Sbjct: 61 MSMSVLGYNISMPIMIAPTALHKLAHPEGELATARAAAAAETIMTLSSWSSCSIEEVNLA 120
Query: 121 GPGIRFFQLYVYKDRNVVAQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLT 180
GPG+RFFQL +YKDRN+V QL++RAE+AG+KAI LTVD P LGRREAD+KNRFTLP +
Sbjct: 121 GPGVRFFQLSIYKDRNLVQQLIQRAEKAGYKAIVLTVDAPWLGRREADVKNRFTLPQNVM 180
Query: 181 LKNFQGLDLGKMDEANDSGLAAYVAGQIDRSLSWKDVKWLQTITKLPILVKGVLTAED-- 238
LK F+GLD GK+DE N SGLAAYVA QIDRS SWKD+KWLQT+T LP+LVKG++TA+D
Sbjct: 181 LKIFEGLDQGKIDETNGSGLAAYVASQIDRSFSWKDIKWLQTVTSLPVLVKGIITAQDTR 240
Query: 239 --VQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALA 296
++ GAAGII+SNHG RQLDY+PATI LEEVV+ GR+PVF+D G RRGTDVFKALA
Sbjct: 241 IAIEYGAAGIIMSNHGGRQLDYLPATISCLEEVVREANGRVPVFIDSGFRRGTDVFKALA 300
Query: 297 LGASGIFIGRPVVYSLAAEGEKGVRRVLEMLREEFELAMALSGCRSLKEITRDHIVTEWD 356
LGASG+FIGRPV++SLA +GE GVR L MLR+E E+ MALSGC S+KEITR H+VTE D
Sbjct: 301 LGASGVFIGRPVLFSLAIDGEAGVRNALRMLRDELEITMALSGCTSVKEITRGHVVTESD 360
|
|
Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Annotation Transfer from SWISS-PROT Entries
Original result of BLAST against SWISS-PROT
| ID | Name | Annotated EC number | Identity | Query coverage | Hit coverage | RBH(Q2H) | RBH(H2Q) |
| B8B8K5 | GLO4_ORYSI | 1, ., 1, ., 3, ., 1, 5 | 0.5859 | 0.9535 | 0.9535 | N/A | no |
| B2FIJ0 | LLDD_STRMK | 1, ., 1, ., 2, ., 3 | 0.3626 | 0.9562 | 0.9234 | yes | no |
| Q54E41 | HAOX_DICDI | 1, ., 1, ., 3, ., 1, 5 | 0.5205 | 0.9535 | 0.8994 | yes | no |
| Q9LRR9 | GLO1_ARATH | 1, ., 1, ., 3, ., 1, 5 | 0.8967 | 0.9890 | 0.9863 | yes | no |
| Q01KC2 | GLO2_ORYSI | 1, ., 1, ., 3, ., 1, 5 | 0.7055 | 0.9726 | 0.9673 | N/A | no |
| B7M492 | LLDD_ECO8A | 1, ., 1, ., 2, ., 3 | 0.3532 | 0.9672 | 0.8939 | yes | no |
| P20932 | MDLB_PSEPU | 1, ., 1, ., 9, 9, ., 3, 1 | 0.3706 | 0.9535 | 0.8880 | yes | no |
| B7L725 | LLDD_ECO55 | 1, ., 1, ., 2, ., 3 | 0.3532 | 0.9672 | 0.8939 | yes | no |
| Q87G18 | LLDD_VIBPA | 1, ., 1, ., 2, ., 3 | 0.3529 | 0.9535 | 0.9208 | yes | no |
| B8AUI3 | GLO3_ORYSI | 1, ., 1, ., 3, ., 1, 5 | 0.8138 | 0.9726 | 0.9700 | N/A | no |
| Q3YVX0 | LLDD_SHISS | 1, ., 1, ., 2, ., 3 | 0.3532 | 0.9672 | 0.8939 | yes | no |
| B7NER0 | LLDD_ECOLU | 1, ., 1, ., 2, ., 3 | 0.3532 | 0.9672 | 0.8939 | yes | no |
| A7IMB0 | LLDD_XANP2 | 1, ., 1, ., 2, ., 3 | 0.3591 | 0.9781 | 0.9226 | yes | no |
| A7MNF6 | LLDD_CROS8 | 1, ., 1, ., 2, ., 3 | 0.3582 | 0.9535 | 0.8703 | yes | no |
| B8B7C5 | GLO5_ORYSI | 1, ., 1, ., 3, ., 1, 5 | 0.8611 | 0.9726 | 0.9647 | N/A | no |
| Q6YT73 | GLO5_ORYSJ | 1, ., 1, ., 3, ., 1, 5 | 0.8611 | 0.9726 | 0.9647 | no | no |
| Q7XPR4 | GLO2_ORYSJ | 1, ., 1, ., 3, ., 1, 5 | 0.7055 | 0.9726 | 0.9673 | no | no |
| B7LTL2 | LLDD_ESCF3 | 1, ., 1, ., 2, ., 3 | 0.3544 | 0.9644 | 0.8914 | yes | no |
| Q0SYD1 | LLDD_SHIF8 | 1, ., 1, ., 2, ., 3 | 0.3532 | 0.9672 | 0.8939 | yes | no |
| B1LK44 | LLDD_ECOSM | 1, ., 1, ., 2, ., 3 | 0.3562 | 0.9508 | 0.8787 | yes | no |
| A8A670 | LLDD_ECOHS | 1, ., 1, ., 2, ., 3 | 0.3532 | 0.9672 | 0.8939 | yes | no |
| O49506 | GLO5_ARATH | 1, ., 1, ., 3, ., 1, 5 | 0.8491 | 0.9672 | 0.9619 | no | no |
| Q10CE4 | GLO1_ORYSJ | 1, ., 1, ., 3, ., 1, 5 | 0.8486 | 0.9972 | 0.9891 | yes | no |
| B1IZI5 | LLDD_ECOLC | 1, ., 1, ., 2, ., 3 | 0.3532 | 0.9672 | 0.8939 | yes | no |
| Q9LRS0 | GLO2_ARATH | 1, ., 1, ., 3, ., 1, 5 | 0.8722 | 0.9890 | 0.9863 | no | no |
| B6I3I4 | LLDD_ECOSE | 1, ., 1, ., 2, ., 3 | 0.3532 | 0.9672 | 0.8939 | yes | no |
| B8AKX6 | GLO1_ORYSI | 1, ., 1, ., 3, ., 1, 5 | 0.8486 | 0.9972 | 0.9891 | N/A | no |
| B1X8M0 | LLDD_ECODH | 1, ., 1, ., 2, ., 3 | 0.3532 | 0.9672 | 0.8939 | yes | no |
| Q83PP7 | LLDD_SHIFL | 1, ., 1, ., 2, ., 3 | 0.3532 | 0.9672 | 0.8939 | yes | no |
| A1AHE2 | LLDD_ECOK1 | 1, ., 1, ., 2, ., 3 | 0.3532 | 0.9672 | 0.8939 | yes | no |
| Q9UJM8 | HAOX1_HUMAN | 1, ., 1, ., 3, ., 1, 5 | 0.5742 | 0.9344 | 0.9243 | yes | no |
| Q7FAS1 | GLO3_ORYSJ | 1, ., 1, ., 3, ., 1, 5 | 0.8138 | 0.9726 | 0.9700 | no | no |
| Q6DAY3 | LLDD_ERWCT | 1, ., 1, ., 2, ., 3 | 0.3689 | 0.9535 | 0.9041 | yes | no |
| P05414 | GOX_SPIOL | 1, ., 1, ., 3, ., 1, 5 | 0.8777 | 0.9945 | 0.9864 | N/A | no |
| Q3ZBW2 | HAOX2_BOVIN | 1, ., 1, ., 3, ., 1, 5 | 0.4532 | 0.9316 | 0.9660 | yes | no |
| Q9WU19 | HAOX1_MOUSE | 1, ., 1, ., 3, ., 1, 5 | 0.5609 | 0.9426 | 0.9324 | yes | no |
| B2U5C2 | LLDD_SHIB3 | 1, ., 1, ., 2, ., 3 | 0.3532 | 0.9672 | 0.8939 | yes | no |
| Q329P9 | LLDD_SHIDS | 1, ., 1, ., 2, ., 3 | 0.3532 | 0.9672 | 0.8939 | yes | no |
| C4ZXJ7 | LLDD_ECOBW | 1, ., 1, ., 2, ., 3 | 0.3532 | 0.9672 | 0.8939 | yes | no |
| B5YWA7 | LLDD_ECO5E | 1, ., 1, ., 2, ., 3 | 0.3532 | 0.9672 | 0.8939 | yes | no |
EC Number Prediction by Ezypred Server
Original result from Ezypred Server
Fail to connect to Ezypred Server
EC Number Prediction by EFICAz Software
| Prediction Level | EC number | Confidence of Prediction |
| 3rd Layer | 1.1.3 | 0.998 |
| 3rd Layer | 1.1.3.15 | 0.994 |
Prediction of Functionally Associated Proteins
Functionally Associated Proteins Detected by STRING
Original result from the STRING server
Fail to connect to STRING server
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST
Original result of RPS-BLAST against CDD database part I
| ID | Alignment Graph | Length |
Definition |
E-value |
| Query | 366 | |||
| PLN02493 | 367 | PLN02493, PLN02493, probable peroxisomal (S)-2-hyd | 0.0 | |
| PLN02979 | 366 | PLN02979, PLN02979, glycolate oxidase | 0.0 | |
| PLN02535 | 364 | PLN02535, PLN02535, glycolate oxidase | 0.0 | |
| cd02809 | 299 | cd02809, alpha_hydroxyacid_oxid_FMN, Family of hom | 1e-165 | |
| pfam01070 | 302 | pfam01070, FMN_dh, FMN-dependent dehydrogenase | 1e-164 | |
| cd02922 | 344 | cd02922, FCB2_FMN, Flavocytochrome b2 (FCB2) FMN-b | 1e-137 | |
| COG1304 | 360 | COG1304, idi, Isopentenyl diphosphate isomerase (B | 1e-124 | |
| cd03332 | 383 | cd03332, LMO_FMN, L-Lactate 2-monooxygenase (LMO) | 1e-115 | |
| cd04737 | 351 | cd04737, LOX_like_FMN, L-Lactate oxidase (LOX) FMN | 1e-115 | |
| cd04736 | 361 | cd04736, MDH_FMN, Mandelate dehydrogenase (MDH)-li | 1e-100 | |
| PRK11197 | 381 | PRK11197, lldD, L-lactate dehydrogenase; Provision | 6e-87 | |
| TIGR02708 | 367 | TIGR02708, L_lactate_ox, L-lactate oxidase | 2e-84 | |
| TIGR03966 | 385 | TIGR03966, actino_HemFlav, heme/flavin dehydrogena | 5e-77 | |
| TIGR02151 | 333 | TIGR02151, IPP_isom_2, isopentenyl-diphosphate del | 8e-21 | |
| PRK05437 | 352 | PRK05437, PRK05437, isopentenyl pyrophosphate isom | 3e-14 | |
| cd02811 | 326 | cd02811, IDI-2_FMN, Isopentenyl-diphosphate:dimeth | 6e-12 | |
| cd02808 | 392 | cd02808, GltS_FMN, Glutamate synthase (GltS) FMN-b | 7e-09 | |
| cd04722 | 200 | cd04722, TIM_phosphate_binding, TIM barrel protein | 1e-08 | |
| COG0069 | 485 | COG0069, GltB, Glutamate synthase domain 2 [Amino | 3e-05 | |
| cd00381 | 325 | cd00381, IMPDH, IMPDH: The catalytic domain of the | 3e-05 | |
| pfam01645 | 367 | pfam01645, Glu_synthase, Conserved region in gluta | 4e-05 | |
| TIGR01304 | 369 | TIGR01304, IMP_DH_rel_2, IMP dehydrogenase family | 1e-04 | |
| TIGR01302 | 450 | TIGR01302, IMP_dehydrog, inosine-5'-monophosphate | 2e-04 | |
| cd04730 | 236 | cd04730, NPD_like, 2-Nitropropane dioxygenase (NPD | 2e-04 | |
| PLN02826 | 409 | PLN02826, PLN02826, dihydroorotate dehydrogenase | 3e-04 | |
| PRK08649 | 368 | PRK08649, PRK08649, inosine 5-monophosphate dehydr | 3e-04 | |
| PRK05567 | 486 | PRK05567, PRK05567, inosine 5'-monophosphate dehyd | 8e-04 | |
| PRK05437 | 352 | PRK05437, PRK05437, isopentenyl pyrophosphate isom | 0.002 | |
| COG0167 | 310 | COG0167, PyrD, Dihydroorotate dehydrogenase [Nucle | 0.002 | |
| pfam00478 | 467 | pfam00478, IMPDH, IMP dehydrogenase / GMP reductas | 0.003 | |
| COG2070 | 336 | COG2070, COG2070, Dioxygenases related to 2-nitrop | 0.004 |
| >gnl|CDD|166134 PLN02493, PLN02493, probable peroxisomal (S)-2-hydroxy-acid oxidase | Back alignment and domain information |
|---|
Score = 637 bits (1645), Expect = 0.0
Identities = 330/368 (89%), Positives = 350/368 (95%), Gaps = 6/368 (1%)
Query: 3 EITNVMEYEAIAKEKLPKMVFDYYASGAEDQWTLQENRNAFSRILFRPRILIDVSKIDMN 62
EITNV EY+AIAK+KLPKMV+DYYASGAEDQWTLQENRNAF+RILFRPRILIDVSKIDM
Sbjct: 2 EITNVTEYDAIAKQKLPKMVYDYYASGAEDQWTLQENRNAFARILFRPRILIDVSKIDMT 61
Query: 63 TTVLGFKISMPIMIAPTAMQKMAHPEGEYATARAASAAGTIMTLSSWSTSSVEEVASTGP 122
TTVLGFKISMPIM+APTAMQKMAHP+GEYATARAASAAGTIMTLSSW+TSSVEEVASTGP
Sbjct: 62 TTVLGFKISMPIMVAPTAMQKMAHPDGEYATARAASAAGTIMTLSSWATSSVEEVASTGP 121
Query: 123 GIRFFQLYVYKDRNVVAQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLTLK 182
GIRFFQLYVYK+RNVV QLVRRAERAGFKAIALTVDTPRLGRRE+DIKNRFTLPP LTLK
Sbjct: 122 GIRFFQLYVYKNRNVVEQLVRRAERAGFKAIALTVDTPRLGRRESDIKNRFTLPPNLTLK 181
Query: 183 NFQGLDLGKMDEANDSGLAAYVAGQIDRSLSWKDVKWLQTITKLPILVKGVLTAED---- 238
NF+GLDLGKMDEANDSGLA+YVAGQIDR+LSWKDV+WLQTITKLPILVKGVLT ED
Sbjct: 182 NFEGLDLGKMDEANDSGLASYVAGQIDRTLSWKDVQWLQTITKLPILVKGVLTGEDARIA 241
Query: 239 VQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALG 298
+QAGAAGIIVSNHGARQLDYVPATI ALEEVVKATQGRIPVFLDGGVRRGTDVFKALALG
Sbjct: 242 IQAGAAGIIVSNHGARQLDYVPATISALEEVVKATQGRIPVFLDGGVRRGTDVFKALALG 301
Query: 299 ASGIFIGRPVVYSLAAEGEKGVRRVLEMLREEFELAMALSGCRSLKEITRDHIVTEWDAS 358
ASGIFIGRPVV+SLAAEGE GVR+VL+MLR+EFEL MALSGCRSLKEI+R+HI TEWD
Sbjct: 302 ASGIFIGRPVVFSLAAEGEAGVRKVLQMLRDEFELTMALSGCRSLKEISRNHITTEWDT- 360
Query: 359 LPRPVPRL 366
PRP RL
Sbjct: 361 -PRPSARL 367
|
Length = 367 |
| >gnl|CDD|166620 PLN02979, PLN02979, glycolate oxidase | Back alignment and domain information |
|---|
Score = 583 bits (1505), Expect = 0.0
Identities = 290/323 (89%), Positives = 306/323 (94%), Gaps = 6/323 (1%)
Query: 48 FRPRILIDVSKIDMNTTVLGFKISMPIMIAPTAMQKMAHPEGEYATARAASAAGTIMTLS 107
FRPRILIDVSKIDM TTVLGFKISMPIM+APTAMQKMAHP+GEYATARAASAAGTIMTLS
Sbjct: 46 FRPRILIDVSKIDMTTTVLGFKISMPIMVAPTAMQKMAHPDGEYATARAASAAGTIMTLS 105
Query: 108 SWSTSSVEEVASTGPGIRFFQLYVYKDRNVVAQLVRRAERAGFKAIALTVDTPRLGRREA 167
SW+TSSVEEVASTGPGIRFFQLYVYK+RNVV QLVRRAERAGFKAIALTVDTPRLGRRE+
Sbjct: 106 SWATSSVEEVASTGPGIRFFQLYVYKNRNVVEQLVRRAERAGFKAIALTVDTPRLGRRES 165
Query: 168 DIKNRFTLPPFLTLKNFQGLDLGKMDEANDSGLAAYVAGQIDRSLSWKDVKWLQTITKLP 227
DIKNRFTLPP LTLKNF+GLDLGKMDEANDSGLA+YVAGQIDR+LSWKDV+WLQTITKLP
Sbjct: 166 DIKNRFTLPPNLTLKNFEGLDLGKMDEANDSGLASYVAGQIDRTLSWKDVQWLQTITKLP 225
Query: 228 ILVKGVLTAED----VQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDG 283
ILVKGVLT ED +QAGAAGIIVSNHGARQLDYVPATI ALEEVVKATQGRIPVFLDG
Sbjct: 226 ILVKGVLTGEDARIAIQAGAAGIIVSNHGARQLDYVPATISALEEVVKATQGRIPVFLDG 285
Query: 284 GVRRGTDVFKALALGASGIFIGRPVVYSLAAEGEKGVRRVLEMLREEFELAMALSGCRSL 343
GVRRGTDVFKALALGASGIFIGRPVV+SLAAEGE GVR+VL+MLR+EFEL MALSGCRSL
Sbjct: 286 GVRRGTDVFKALALGASGIFIGRPVVFSLAAEGEAGVRKVLQMLRDEFELTMALSGCRSL 345
Query: 344 KEITRDHIVTEWDASLPRPVPRL 366
KEI+R+HI TEWD PRP RL
Sbjct: 346 KEISRNHITTEWDT--PRPSARL 366
|
Length = 366 |
| >gnl|CDD|215294 PLN02535, PLN02535, glycolate oxidase | Back alignment and domain information |
|---|
Score = 529 bits (1363), Expect = 0.0
Identities = 230/360 (63%), Positives = 281/360 (78%), Gaps = 7/360 (1%)
Query: 1 MGEITNVMEYEAIAKEKLPKMVFDYYASGAEDQWTLQENRNAFSRILFRPRILIDVSKID 60
EI NV E++ +AK+ LPKM +D+YA GAEDQ TL+EN AF RI FRPR+L+DVSKID
Sbjct: 2 ADEIVNVNEFQELAKQALPKMYYDFYAGGAEDQHTLKENVQAFRRITFRPRVLVDVSKID 61
Query: 61 MNTTVLGFKISMPIMIAPTAMQKMAHPEGEYATARAASAAGTIMTLSSWSTSSVEEVAST 120
M+TT+LG+ IS PIMIAPTAM K+AHPEGE ATARAA+A TIM LS ++ +VEEVAS+
Sbjct: 62 MSTTILGYTISAPIMIAPTAMHKLAHPEGEIATARAAAACNTIMVLSFMASCTVEEVASS 121
Query: 121 GPGIRFFQLYVYKDRNVVAQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLT 180
+RF QLYVYK R++ AQLV+RAE+ G+KAI LT D PRLGRREADIKN+ P
Sbjct: 122 CNAVRFLQLYVYKRRDIAAQLVQRAEKNGYKAIVLTADVPRLGRREADIKNKMISP---Q 178
Query: 181 LKNFQGLDLGKMDEANDSGLAAYVAGQIDRSLSWKDVKWLQTITKLPILVKGVLTAED-- 238
LKNF+GL ++ SGL A+ + D SLSWKD++WL++IT LPIL+KGVLT ED
Sbjct: 179 LKNFEGLLSTEVVSDKGSGLEAFASETFDASLSWKDIEWLRSITNLPILIKGVLTREDAI 238
Query: 239 --VQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALA 296
V+ G AGIIVSNHGARQLDY PATI LEEVV+A GR+PV LDGGVRRGTDVFKALA
Sbjct: 239 KAVEVGVAGIIVSNHGARQLDYSPATISVLEEVVQAVGGRVPVLLDGGVRRGTDVFKALA 298
Query: 297 LGASGIFIGRPVVYSLAAEGEKGVRRVLEMLREEFELAMALSGCRSLKEITRDHIVTEWD 356
LGA + +GRPV+Y LAA+GE GVR+V+EML++E E+ MALSGC S+K+ITR H+ TE +
Sbjct: 299 LGAQAVLVGRPVIYGLAAKGEDGVRKVIEMLKDELEITMALSGCPSVKDITRSHVRTERE 358
|
Length = 364 |
| >gnl|CDD|239203 cd02809, alpha_hydroxyacid_oxid_FMN, Family of homologous FMN-dependent alpha-hydroxyacid oxidizing enzymes | Back alignment and domain information |
|---|
Score = 462 bits (1191), Expect = e-165
Identities = 179/344 (52%), Positives = 221/344 (64%), Gaps = 50/344 (14%)
Query: 9 EYEAIAKEKLPKMVFDYYASGAEDQWTLQENRNAFSRILFRPRILIDVSKIDMNTTVLGF 68
+ A+A+ +LPK VFDY GA D+ TL+ NR AF RI RPR+L DVSK D +TT+LG
Sbjct: 2 DLRALARRRLPKAVFDYIDGGAGDEVTLRRNRAAFDRIRLRPRVLRDVSKRDTSTTLLGQ 61
Query: 69 KISMPIMIAPTAMQKMAHPEGEYATARAASAAGTIMTLSSWSTSSVEEVASTGPGIRFFQ 128
K++MP IAPT +Q +AHP+GE ATARAA+AAG TLS+ ST+S+EEVA+ PG R+FQ
Sbjct: 62 KLAMPFGIAPTGLQGLAHPDGELATARAAAAAGIPFTLSTVSTTSLEEVAAAAPGPRWFQ 121
Query: 129 LYVYKDRNVVAQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLTLKNFQGLD 188
LYV +DR + L+RRAE AG+KA+ LTVDTP LGRR
Sbjct: 122 LYVPRDREITEDLLRRAEAAGYKALVLTVDTPVLGRR----------------------- 158
Query: 189 LGKMDEANDSGLAAYVAGQIDRSLSWKDVKWLQTITKLPILVKGVLTAED----VQAGAA 244
L+W D+ WL++ K P+++KG+LT ED V AGA
Sbjct: 159 -----------------------LTWDDLAWLRSQWKGPLILKGILTPEDALRAVDAGAD 195
Query: 245 GIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFI 304
GI+VSNHG RQLD PATI AL E+V A GRI V LDGG+RRGTDV KALALGA + I
Sbjct: 196 GIVVSNHGGRQLDGAPATIDALPEIVAAVGGRIEVLLDGGIRRGTDVLKALALGADAVLI 255
Query: 305 GRPVVYSLAAEGEKGVRRVLEMLREEFELAMALSGCRSLKEITR 348
GRP +Y LAA GE GV VLE+LR+E E AMAL GC SL ++
Sbjct: 256 GRPFLYGLAAGGEAGVAHVLEILRDELERAMALLGCASLADLDP 299
|
This family occurs in both prokaryotes and eukaryotes. Members of this family include flavocytochrome b2 (FCB2), glycolate oxidase (GOX), lactate monooxygenase (LMO), mandelate dehydrogenase (MDH), and long chain hydroxyacid oxidase (LCHAO). In green plants, glycolate oxidase is one of the key enzymes in photorespiration where it oxidizes glycolate to glyoxylate. LMO catalyzes the oxidation of L-lactate to acetate and carbon dioxide. MDH oxidizes (S)-mandelate to phenylglyoxalate. It is an enzyme in the mandelate pathway that occurs in several strains of Pseudomonas which converts (R)-mandelate to benzoate. Length = 299 |
| >gnl|CDD|216281 pfam01070, FMN_dh, FMN-dependent dehydrogenase | Back alignment and domain information |
|---|
Score = 460 bits (1186), Expect = e-164
Identities = 167/344 (48%), Positives = 214/344 (62%), Gaps = 46/344 (13%)
Query: 14 AKEKLPKMVFDYYASGAEDQWTLQENRNAFSRILFRPRILIDVSKIDMNTTVLGFKISMP 73
A+ +LPK FDY GA D+ TL+ NR AF RI RPR+L DVS D++TT+LG ++S+P
Sbjct: 1 ARRRLPKFAFDYIDGGAGDEVTLRRNRAAFDRIRLRPRVLRDVSDRDLSTTLLGQRLSLP 60
Query: 74 IMIAPTAMQKMAHPEGEYATARAASAAGTIMTLSSWSTSSVEEVASTGPGIRFFQLYVYK 133
IAPT MQ +AHP+GE A ARAA+AAG LS+ S++S+EEVA+ G +FQLYV K
Sbjct: 61 FGIAPTGMQGLAHPDGELALARAAAAAGIPFVLSTVSSTSLEEVAAAAGGPLWFQLYVPK 120
Query: 134 DRNVVAQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLTLKNFQGLDLGKMD 193
DR + L+ RAE AG+KA+ LTVDTP LG RE D++
Sbjct: 121 DRELTEDLLERAEAAGYKALVLTVDTPVLGNRERDLR----------------------- 157
Query: 194 EANDSGLAAYVAGQIDRSLSWKDVKWLQTITKLPILVKGVLTAED----VQAGAAGIIVS 249
+W D+ WL+ K P++VKG+L+ ED V+AG GI+VS
Sbjct: 158 -------------------TWDDLAWLRDQWKGPLVVKGILSPEDAKRAVEAGVDGIVVS 198
Query: 250 NHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFIGRPVV 309
NHG RQLD PATI AL E+V A GRIPV +DGG+RRGTDV KALALGA + +GRP +
Sbjct: 199 NHGGRQLDGAPATIDALPEIVAAVGGRIPVLVDGGIRRGTDVLKALALGADAVLLGRPFL 258
Query: 310 YSLAAEGEKGVRRVLEMLREEFELAMALSGCRSLKEITRDHIVT 353
Y LAA GE GV LE+LR+E E MAL GC S+ ++T +
Sbjct: 259 YGLAAGGEAGVAHALEILRDELERTMALLGCTSIADLTPSLLRR 302
|
Length = 302 |
| >gnl|CDD|239238 cd02922, FCB2_FMN, Flavocytochrome b2 (FCB2) FMN-binding domain | Back alignment and domain information |
|---|
Score = 393 bits (1013), Expect = e-137
Identities = 159/347 (45%), Positives = 222/347 (63%), Gaps = 16/347 (4%)
Query: 9 EYEAIAKEKLPKMVFDYYASGAEDQWTLQENRNAFSRILFRPRILIDVSKIDMNTTVLGF 68
++EA AK+ L K + YY+SGA+D+ TL+EN AF RI FRPR+L DV K+D +TT+LG
Sbjct: 2 DFEAAAKKYLSKKAWAYYSSGADDEITLRENLEAFQRIRFRPRVLRDVEKVDTSTTILGH 61
Query: 69 KISMPIMIAPTAMQKMAHPEGEYATARAASAAGTIMTLSSWSTSSVEEV--ASTGPGIRF 126
K+S+P I+P A+ K+AHP+GE ARAA G + +S+ ++ S+EE+ A F
Sbjct: 62 KVSLPFFISPAALAKLAHPDGELNLARAAGKHGILQMISTNASCSLEEIVDARPPDQPLF 121
Query: 127 FQLYVYKDRNVVAQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLTLKNFQG 186
FQLYV KDR +L++RAE+ G KAI LTVD P LG+RE D + +
Sbjct: 122 FQLYVNKDRTKTEELLKRAEKLGAKAIFLTVDAPVLGKRERDERLKAEEAV-------SD 174
Query: 187 LDLGKMDEANDSGLAAYVAGQIDRSLSWKDVKWLQTITKLPILVKGVLTAEDV----QAG 242
GK +A G ++G ID +L+W D+KWL+ TKLPI++KGV T ED + G
Sbjct: 175 GPAGKKTKAKGGGAGRAMSGFIDPTLTWDDIKWLRKHTKLPIVLKGVQTVEDAVLAAEYG 234
Query: 243 AAGIIVSNHGARQLDYVPATIMALEEVVK-ATQ--GRIPVFLDGGVRRGTDVFKALALGA 299
GI++SNHG RQLD PA I L E+ K + +I V++DGGVRRGTDV KAL LGA
Sbjct: 235 VDGIVLSNHGGRQLDTAPAPIEVLLEIRKHCPEVFDKIEVYVDGGVRRGTDVLKALCLGA 294
Query: 300 SGIFIGRPVVYSLAAEGEKGVRRVLEMLREEFELAMALSGCRSLKEI 346
+ +GRP +Y+L+A GE+GV + +++L++E E M L G SL ++
Sbjct: 295 KAVGLGRPFLYALSAYGEEGVEKAIQILKDEIETTMRLLGVTSLDQL 341
|
FCB2 (AKA L-lactate:cytochrome c oxidoreductase) is a respiratory enzyme located in the intermembrane space of fungal mitochondria which catalyzes the oxidation of L-lactate to pyruvate. FCB2 also participates in a short electron-transport chain involving cytochrome c and cytochrome oxidase which ultimately directs the reducing equivalents gained from L-lactate oxidation to oxygen, yielding one molecule of ATP for every L-lactate molecule consumed. FCB2 is composed of 2 domains: a C-terminal flavin-binding domain, which includes the active site for lacate oxidation, and an N-terminal b2-cytochrome domain, required for efficient cytochrome c reduction. FCB2 is a homotetramer and contains two noncovalently bound cofactors, FMN and heme per subunit. Length = 344 |
| >gnl|CDD|224223 COG1304, idi, Isopentenyl diphosphate isomerase (BS_ypgA, MTH48 and related proteins) [Coenzyme transport and metabolism] | Back alignment and domain information |
|---|
Score = 360 bits (927), Expect = e-124
Identities = 155/356 (43%), Positives = 206/356 (57%), Gaps = 17/356 (4%)
Query: 7 VMEYEAIAKEKLPKMVFDYYASGAEDQWTLQENRNAFSRILFRPRILIDVSKIDMNTTVL 66
V + A+ +LPK F Y GAED+ TL+ NR AF I RPR+L +V ID++TT L
Sbjct: 1 VADLRRAAQRRLPK-AFHYIDGGAEDEVTLRRNREAFEDIALRPRVLPEVDDIDLSTTFL 59
Query: 67 GFKISMPIMIAPTAMQKMAHPEGEYATARAASAAGTIMTLSSWSTSSVEEVASTGPGIRF 126
G K+S PI+IAP +AHPEGE A+ A+AAG LS+ + +EEVA+ P
Sbjct: 60 GQKLSAPIIIAPMTGGGLAHPEGEVINAKLAAAAGEPFILSTVGSQRIEEVAAAPP---- 115
Query: 127 FQLYVYKDRNVVAQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLTLKNFQG 186
FQLY KDR LV RA AG K + LTVD+P G RE D N + P N
Sbjct: 116 FQLYFSKDREFAPNLVDRAANAGAKQLVLTVDSPVGGERERDAVNGISAPALAIHLNV-- 173
Query: 187 LDLGKMDEANDSG------LAAYVAGQIDRSLSWKDVKWLQTITKLPILVKGVLTAEDV- 239
L E + G +A YV+ +S +D + P+++KG+L ED
Sbjct: 174 LQEATQPEGDRDGKGGLDSIAEYVSALSVPVISKEDGAGISKEWAGPLVLKGILAPEDAA 233
Query: 240 ---QAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALA 296
GA GI VSNHG RQLD+ +T +L E+V+A RI V DGG+R G DV KALA
Sbjct: 234 GAGGTGADGIEVSNHGGRQLDWGISTADSLPEIVEAVGDRIEVIADGGIRSGLDVAKALA 293
Query: 297 LGASGIFIGRPVVYSLAAEGEKGVRRVLEMLREEFELAMALSGCRSLKEITRDHIV 352
LGA + IGRP +Y LAA GE GV RVLE++R+E ++AMAL+G ++++E+ R +V
Sbjct: 294 LGADAVGIGRPFLYGLAAGGEAGVERVLEIIRKELKIAMALTGAKNIEELKRVPLV 349
|
Length = 360 |
| >gnl|CDD|239448 cd03332, LMO_FMN, L-Lactate 2-monooxygenase (LMO) FMN-binding domain | Back alignment and domain information |
|---|
Score = 340 bits (875), Expect = e-115
Identities = 149/367 (40%), Positives = 219/367 (59%), Gaps = 22/367 (5%)
Query: 5 TNVMEYEAIAKEKLPKMVFDYYASGAEDQWTLQENRNAFSRILFRPRILIDVSKIDMNTT 64
+ EA+A+E L F Y A GA + T + NR+AFSR PR+L V++ D++
Sbjct: 19 VDPERLEALAREALSPGAFAYVAGGAGSESTARANRDAFSRWRIVPRMLRGVTERDLSVE 78
Query: 65 VLGFKISMPIMIAPTAMQKMAHPEGEYATARAASAAGTIMTLSSWSTSSVEEVA-STGPG 123
+ G ++ P+++AP +Q++ HP+ E ATARAA+ G LS+ S+SS+E+VA + G
Sbjct: 79 LFGRTLAAPLLLAPIGVQELFHPDAELATARAAAELGVPYILSTASSSSIEDVAAAAGDA 138
Query: 124 IRFFQLYVYKDRNVVAQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLT--- 180
R+FQLY KD ++ L+RRAE+AG++ + +T+DT LG R D+ + PFL
Sbjct: 139 PRWFQLYWPKDDDLTESLLRRAEKAGYRVLVVTLDTWSLGWRPRDLDLGYL--PFLRGIG 196
Query: 181 LKNF-------QGLD--LGKMDEANDSGLAA---YVAGQIDRSLSWKDVKWLQTITKLPI 228
+ N+ + L +G+ EA AA +V+ SL+W+D+ +L+ T LPI
Sbjct: 197 IANYFSDPVFRKKLAEPVGEDPEAPPPMEAAVARFVSVFSGPSLTWEDLAFLREWTDLPI 256
Query: 229 LVKGVLTAED----VQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGG 284
++KG+L +D V+AG G++VSNHG RQ+D A + AL E+V+A R+ V D G
Sbjct: 257 VLKGILHPDDARRAVEAGVDGVVVSNHGGRQVDGSIAALDALPEIVEAVGDRLTVLFDSG 316
Query: 285 VRRGTDVFKALALGASGIFIGRPVVYSLAAEGEKGVRRVLEMLREEFELAMALSGCRSLK 344
VR G D+ KALALGA + IGRP Y LA GE GV VL L E +L M L+G RS+
Sbjct: 317 VRTGADIMKALALGAKAVLIGRPYAYGLALGGEDGVEHVLRNLLAELDLTMGLAGIRSIA 376
Query: 345 EITRDHI 351
E+TRD +
Sbjct: 377 ELTRDAL 383
|
LMO is a FMN-containing enzyme that catalyzes the conversion of L-lactate and oxygen to acetate, carbon dioxide, and water. LMO is a member of the family of alpha-hydroxy acid oxidases. It is thought to be a homooctamer with two- and four- fold axes in the center of the octamer. Length = 383 |
| >gnl|CDD|240088 cd04737, LOX_like_FMN, L-Lactate oxidase (LOX) FMN-binding domain | Back alignment and domain information |
|---|
Score = 337 bits (866), Expect = e-115
Identities = 146/351 (41%), Positives = 211/351 (60%), Gaps = 11/351 (3%)
Query: 3 EITNVMEYEAIAKEKLPKMVFDYYASGAEDQWTLQENRNAFSRILFRPRILIDVSKIDMN 62
+I N+ + EA AK+ +PK F Y A G+ED+WTL+EN AF+ PR+L V D +
Sbjct: 4 DIINLYDLEAEAKKVIPKGAFGYIAGGSEDEWTLRENTRAFNHKQIVPRVLQGVESPDTS 63
Query: 63 TTVLGFKISMPIMIAPTAMQKMAHPEGEYATARAASAAGTIMTLSSWSTSSVEEVASTGP 122
T +LG K+ PI++AP A +AH GE ATAR + G++ ++S++S +S+EE+A
Sbjct: 64 TELLGIKLKTPIIMAPIAAHGLAHATGEVATARGMAEVGSLFSISTYSNTSLEEIAKASN 123
Query: 123 GI-RFFQLYVYKDRNVVAQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLTL 181
G ++FQLY+ KD L+ RA+ AG KAI LT D G READI+N+F P +
Sbjct: 124 GGPKWFQLYMSKDDGFNRSLLDRAKAAGAKAIILTADATVGGNREADIRNKFQFP--FGM 181
Query: 182 KNFQGLDLGKMDEANDSGLAAYVAGQIDRSLSWKDVKWLQTITKLPILVKGVLTAED--- 238
N G S + + LS D++++ I+ LP++VKG+ + ED
Sbjct: 182 PNLNHFSEGTGKGKGIS----EIYAAAKQKLSPADIEFIAKISGLPVIVKGIQSPEDADV 237
Query: 239 -VQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALAL 297
+ AGA GI VSNHG RQLD PA+ +L E+ +A R+P+ D GVRRG VFKALA
Sbjct: 238 AINAGADGIWVSNHGGRQLDGGPASFDSLPEIAEAVNHRVPIIFDSGVRRGEHVFKALAS 297
Query: 298 GASGIFIGRPVVYSLAAEGEKGVRRVLEMLREEFELAMALSGCRSLKEITR 348
GA + +GRPV+Y LA G +GV VLE L +E ++ M L+G R+++++ R
Sbjct: 298 GADAVAVGRPVLYGLALGGAQGVASVLEHLNKELKIVMQLAGTRTIEDVKR 348
|
LOX is a member of the family of FMN-containing alpha-hydroxyacid oxidases and catalyzes the oxidation of l-lactate using molecular oxygen to generate pyruvate and H2O2. This family occurs in both prokaryotes and eukaryotes. Members of this family include flavocytochrome b2 (FCB2), glycolate oxidase (GOX), lactate monooxygenase (LMO), mandelate dehydrogenase (MDH), and long chain hydroxyacid oxidase (LCHAO). Length = 351 |
| >gnl|CDD|240087 cd04736, MDH_FMN, Mandelate dehydrogenase (MDH)-like FMN-binding domain | Back alignment and domain information |
|---|
Score = 301 bits (772), Expect = e-100
Identities = 152/363 (41%), Positives = 217/363 (59%), Gaps = 26/363 (7%)
Query: 9 EYEAIAKEKLPKMVFDYYASGAEDQWTLQENRNAFSRILFRPRILIDVSKIDMNTTVLGF 68
+Y ++AK++LP+MVFDY GAED+ L+ NR+AF R F PR L+DVSK D++ ++ G
Sbjct: 2 DYRSLAKKRLPRMVFDYLEGGAEDEKGLRHNRDAFDRWRFIPRRLVDVSKRDISASLFGK 61
Query: 69 KISMPIMIAPTAMQKMAHPEGEYATARAASAAGTIMTLSSWSTSSVEEVASTGPGIRFFQ 128
S P++IAPT + P G+ A ARAA+ AG LS+ S S+E+VA G +FQ
Sbjct: 62 VWSAPLVIAPTGLNGAFWPNGDLALARAAAKAGIPFVLSTASNMSIEDVARQADGDLWFQ 121
Query: 129 LYVYKDRNVVAQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFTLP------------ 176
LYV R + LV+RA AG+ + LT D G RE D++N F +P
Sbjct: 122 LYVVH-RELAELLVKRALAAGYTTLVLTTDVAVNGYRERDLRNGFAIPFRYTPRVLLDGI 180
Query: 177 --PFLTLKNFQGLDLGK----MDEANDSGL-AAYVAGQIDRSLSWKDVKWLQTITKLPIL 229
P L+ + D+A D + AA ++ Q+D S +W+D++WL+ + +L
Sbjct: 181 LHPRWLLRFLRNGMPQLANFASDDAIDVEVQAALMSRQMDASFNWQDLRWLRDLWPHKLL 240
Query: 230 VKGVLTAED----VQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGV 285
VKG++TAED ++ GA G+I+SNHG RQLD A I AL E+V AT PV +D G+
Sbjct: 241 VKGIVTAEDAKRCIELGADGVILSNHGGRQLDDAIAPIEALAEIVAATY--KPVLIDSGI 298
Query: 286 RRGTDVFKALALGASGIFIGRPVVYSLAAEGEKGVRRVLEMLREEFELAMALSGCRSLKE 345
RRG+D+ KALALGA+ + +GR +Y LAA GE GV VL +L+EE + +AL GC +
Sbjct: 299 RRGSDIVKALALGANAVLLGRATLYGLAARGEAGVSEVLRLLKEEIDRTLALIGCPDIAS 358
Query: 346 ITR 348
+T
Sbjct: 359 LTP 361
|
MDH is part of a widespread family of homologous FMN-dependent a-hydroxy acid oxidizing enzymes that oxidizes (S)-mandelate to phenylglyoxalate. MDH is an enzyme in the mandelate pathway that occurs in several strains of Pseudomonas which converts (R)-mandelate to benzoate. This family occurs in both prokaryotes and eukaryotes. Members of this family include flavocytochrome b2 (FCB2), glycolate oxidase (GOX), lactate monooxygenase (LMO), mandelate dehydrogenase (MDH), and long chain hydroxyacid oxidase (LCHAO). Length = 361 |
| >gnl|CDD|183033 PRK11197, lldD, L-lactate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Score = 267 bits (684), Expect = 6e-87
Identities = 137/374 (36%), Positives = 204/374 (54%), Gaps = 25/374 (6%)
Query: 4 ITNVMEYEAIAKEKLPKMVFDYYASGAEDQWTLQENRNAFSRILFRPRILIDVSKIDMNT 63
I+ +Y A A+ +LP +F Y GA ++TL+ N + I R R+L D+S + + T
Sbjct: 3 ISAASDYRAAAQRRLPPFLFHYIDGGAYAEYTLRRNVEDLADIALRQRVLKDMSDLSLET 62
Query: 64 TVLGFKISMPIMIAPTAMQKMAHPEGEYATARAASAAGTIMTLSSWSTSSVEEVASTGPG 123
T+ G K+SMP+ +AP + M GE ARAA A G TLS+ S +EEVA
Sbjct: 63 TLFGEKLSMPVALAPVGLTGMYARRGEVQAARAADAKGIPFTLSTVSVCPIEEVAPAIKR 122
Query: 124 IRFFQLYVYKDRNVVAQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLTLKN 183
+FQLYV +DR + + RA+ AG + TVD P G R D + + P +
Sbjct: 123 PMWFQLYVLRDRGFMRNALERAKAAGCSTLVFTVDMPVPGARYRDAHSGMSGPNAAMRRY 182
Query: 184 FQGL-------DLGKMDEAND-----------SGLAAYVA---GQIDRSLSWKDVKWLQT 222
Q + D+G +D +GL Y+ D S+SWKD++W++
Sbjct: 183 LQAVTHPQWAWDVGLNGRPHDLGNISAYLGKPTGLEDYIGWLGNNFDPSISWKDLEWIRD 242
Query: 223 ITKLPILVKGVLTAED----VQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIP 278
P+++KG+L ED V+ GA GI+VSNHG RQLD V ++ AL + A +G I
Sbjct: 243 FWDGPMVIKGILDPEDARDAVRFGADGIVVSNHGGRQLDGVLSSARALPAIADAVKGDIT 302
Query: 279 VFLDGGVRRGTDVFKALALGASGIFIGRPVVYSLAAEGEKGVRRVLEMLREEFELAMALS 338
+ D G+R G DV + +ALGA + +GR VY+LAA G+ GV +L+++ +E +AM L+
Sbjct: 303 ILADSGIRNGLDVVRMIALGADTVLLGRAFVYALAAAGQAGVANLLDLIEKEMRVAMTLT 362
Query: 339 GCRSLKEITRDHIV 352
G +S+ EITRD +V
Sbjct: 363 GAKSISEITRDSLV 376
|
Length = 381 |
| >gnl|CDD|131755 TIGR02708, L_lactate_ox, L-lactate oxidase | Back alignment and domain information |
|---|
Score = 260 bits (665), Expect = 2e-84
Identities = 133/354 (37%), Positives = 194/354 (54%), Gaps = 22/354 (6%)
Query: 3 EITNVMEYEAIAKEKLPKMVFDYYASGAEDQWTLQENRNAFSRILFRPRILIDVSKIDMN 62
+ N + E +A++ +PK F Y ASGA D +TL+EN AF+ L P +L DV
Sbjct: 12 DFINTYDLEEMAQQVIPKGAFGYIASGAGDTFTLRENIRAFNHKLIVPHLLQDVENPSTE 71
Query: 63 TTVLGFKISMPIMIAPTAMQKMAHPEGEYATARAASAAGTIMTLSSWSTSSVEEV-ASTG 121
LG K+ P ++AP A K+A+ +GE ATAR S G+I T SS+ST+ + E+ +
Sbjct: 72 IEFLGHKLKSPFIMAPVAAHKLANEQGEVATARGVSEFGSIYTTSSYSTADLPEISEALN 131
Query: 122 PGIRFFQLYVYKDRNVVAQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFTLP---PF 178
+FQ Y+ KD + ++ R + G KAI LT D G RE D++N F P P
Sbjct: 132 GTPHWFQFYMSKDDGINRDIMDRVKADGAKAIVLTADATVGGNREVDVRNGFVFPVGMPI 191
Query: 179 LT--LKNFQGLDLGKMDEANDSGLAAYVAGQIDRSLSWKDVKWLQTITKLPILVKGVLTA 236
+ L G + V + LS +D++ + + LP+ VKG
Sbjct: 192 VQEYLPTGAGKSMD------------NVYKSAKQKLSPRDIEEIAGYSGLPVYVKGPQCP 239
Query: 237 EDV----QAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVF 292
ED +AGA+GI V+NHG RQLD PA +L+EV +A R+P+ D GVRRG VF
Sbjct: 240 EDADRALKAGASGIWVTNHGGRQLDGGPAAFDSLQEVAEAVDKRVPIVFDSGVRRGQHVF 299
Query: 293 KALALGASGIFIGRPVVYSLAAEGEKGVRRVLEMLREEFELAMALSGCRSLKEI 346
KALA GA + +GRPV+Y LA G +G R+V E L +E + M L+G ++++++
Sbjct: 300 KALASGADLVALGRPVIYGLALGGSQGARQVFEYLNKELKRVMQLTGTQTIEDV 353
|
Members of this protein oxidize L-lactate to pyruvate, reducing molecular oxygen to hydrogen peroxide. The enzyme is known in Aerococcus viridans, Streptococcus iniae, and some strains of Streptococcus pyogenes where it appears to contribute to virulence [Energy metabolism, Other]. Length = 367 |
| >gnl|CDD|188481 TIGR03966, actino_HemFlav, heme/flavin dehydrogenase, mycofactocin system | Back alignment and domain information |
|---|
Score = 241 bits (618), Expect = 5e-77
Identities = 133/374 (35%), Positives = 202/374 (54%), Gaps = 31/374 (8%)
Query: 7 VMEYEAIAKEKLPKMVFDYYASGAEDQWTLQENRNAFSRILFRPRILIDVSKIDMNTTVL 66
V E + A+++LP+ V+ +G E TL +N AF + FRP + K +++TTV+
Sbjct: 8 VAEAQRRARKRLPRSVYAALIAGTEKGVTLADNVAAFDELGFRPHVAGAPPKRELSTTVM 67
Query: 67 GFKISMPIMIAPTAMQKMAHPEGEYATARAASAAGTIMTLSSWSTSSVEEVASTGPGIRF 126
G +IS P++I+PT +Q + HP+GE A ARAA+A GT M LSS+++ VEEV + P F
Sbjct: 68 GQEISFPVLISPTGVQAV-HPDGEVAVARAAAARGTAMGLSSFASKPVEEVVAANPKT-F 125
Query: 127 FQLYVYKDRNVVAQLVRRAERAGFKAIALTVD----------TPRLGRREADIKNRFTLP 176
FQ+Y R+ + + RA AG K + LT+D +P + + D++
Sbjct: 126 FQIYWVGSRDDILARLERARAAGAKGLILTLDWSFASRRDWGSPEIPEK-IDLRTMLRFA 184
Query: 177 PFLTLK--------------NFQGLDLGKMDEANDSGLAAYVAGQIDRSLSWKDVKWLQT 222
P + ++ + +L E + AY +W+DV WL+
Sbjct: 185 PEVLVRPGWLLRYLRSGRIPDLTVPNLALRGETPPTFFGAYGEWMGTPPPTWEDVAWLRE 244
Query: 223 ITKLPILVKGVLTAED----VQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIP 278
P ++KG+ +D V AGA I VSNHG LD PA I AL + +A ++
Sbjct: 245 QWGGPFMLKGITRPDDARRAVDAGATAISVSNHGGNNLDGTPAAIRALPAIAEAVGDQVE 304
Query: 279 VFLDGGVRRGTDVFKALALGASGIFIGRPVVYSLAAEGEKGVRRVLEMLREEFELAMALS 338
V LDGG+RRG+DV KALALGA + IGR ++ LAA GE GV VL++LR+ + A+
Sbjct: 305 VLLDGGIRRGSDVVKALALGARAVMIGRAYLWGLAANGEAGVENVLDILRQGIDSALLGL 364
Query: 339 GCRSLKEITRDHIV 352
G S+ E++R+ +V
Sbjct: 365 GKASVHELSREDLV 378
|
Members of this protein family possess an N-terminal heme-binding domain and C-terminal flavodehydrogenase domain, and share homology to yeast flavocytochrome b2, to E. coli L-lactate dehydrogenase [cytochrome], to (S)-mandelate dehydrogenase, etc. This enzyme appears only in the context of the mycofactocin system. Interestingly, it is absent from the four species detected so far with mycofactocin but without an F420 biosynthesis system. Length = 385 |
| >gnl|CDD|233750 TIGR02151, IPP_isom_2, isopentenyl-diphosphate delta-isomerase, type 2 | Back alignment and domain information |
|---|
Score = 91.6 bits (228), Expect = 8e-21
Identities = 88/368 (23%), Positives = 138/368 (37%), Gaps = 92/368 (25%)
Query: 30 AEDQWTLQENRNAFSRILFRPRIL--IDVSKIDMNTTVLGFKISMPIMIAPTAMQKMAHP 87
Q F I L I++ ID+ T LG ++ P I AM
Sbjct: 10 CLKQNVEYGGSTGFDDITLIHNALPEINLDDIDLTTEFLGKRLKAPFYI--NAMTG-GSE 66
Query: 88 EG---EYATARAASAAGTIMTLSS-----------WSTSSVEEVASTGP---GIRFFQLY 130
E ARAA G M + S + V E A GP I QL
Sbjct: 67 EAGKINRNLARAARELGIPMGVGSQRAALKDPETADTFEVVREEAPNGPLIANIGAPQL- 125
Query: 131 VYKDRNVVAQLVRRAERAGFKAIALTVDTPR-LGRREADIKNRFTLPPFLTLKNFQGLDL 189
V + + E A+A+ ++ + L + E D +NF+G L
Sbjct: 126 VEGGPEEAQEAIDMIEA---DALAIHLNVLQELVQPEGD-------------RNFKGW-L 168
Query: 190 GKMDEANDSGLAAYVAGQIDRSLSWKDVKWLQTITKLPILVKGV---LTAEDV----QAG 242
K+ E + Q+ +P++VK V ++ E AG
Sbjct: 169 EKIAE---------ICSQLS----------------VPVIVKEVGFGISKEVAKLLADAG 203
Query: 243 AAGIIVSNHG---------ARQLDYVPA---------TIMALEEVVKATQGRIPVFLDGG 284
+ I V+ G R A T +L EV ++ P+ GG
Sbjct: 204 VSAIDVAGAGGTSWAQVENYRAKGSNLASFFNDWGIPTAASLLEV-RSDAPDAPIIASGG 262
Query: 285 VRRGTDVFKALALGASGIFIGRPVVYSLAAEGEKGVRRVLEMLREEFELAMALSGCRSLK 344
+R G DV KA+ALGA + + RP + + EGE+ V +E++ EE ++AM L+G +++
Sbjct: 263 LRTGLDVAKAIALGADAVGMARPFLKAALDEGEEAVIEEIELIIEELKVAMFLTGAKTIA 322
Query: 345 EITRDHIV 352
E+ + +V
Sbjct: 323 ELKKVPLV 330
|
Isopentenyl-diphosphate delta-isomerase (IPP isomerase) interconverts isopentenyl diphosphate and dimethylallyl diphosphate. This model represents the type 2 enzyme. FMN, NADPH, and Mg2+ are required by this form, which lacks homology to the type 1 enzyme (TIGR02150). IPP is precursor to many compounds, including enzyme cofactors, sterols, and isoprenoids [Biosynthesis of cofactors, prosthetic groups, and carriers, Other]. Length = 333 |
| >gnl|CDD|235465 PRK05437, PRK05437, isopentenyl pyrophosphate isomerase; Provisional | Back alignment and domain information |
|---|
Score = 72.9 bits (180), Expect = 3e-14
Identities = 44/161 (27%), Positives = 74/161 (45%), Gaps = 32/161 (19%)
Query: 219 WLQTITKL------PILVKGV---LTAEDVQ----AGAAGIIVSNHG---------ARQL 256
WL I ++ P++VK V ++ E + AG I V+ G R
Sbjct: 174 WLDNIAEIVSALPVPVIVKEVGFGISKETAKRLADAGVKAIDVAGAGGTSWAAIENYRAR 233
Query: 257 DYVPA---------TIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFIGRP 307
D A T +L E ++ +P+ GG+R G D+ KALALGA + + P
Sbjct: 234 DDRLASYFADWGIPTAQSLLEA-RSLLPDLPIIASGGIRNGLDIAKALALGADAVGMAGP 292
Query: 308 VVYSLAAEGEKGVRRVLEMLREEFELAMALSGCRSLKEITR 348
+ + GE+ V ++E EE ++AM L+G +++ E+ +
Sbjct: 293 FLKAALEGGEEAVIELIEQWIEELKIAMFLTGAKNIAELRK 333
|
Length = 352 |
| >gnl|CDD|239205 cd02811, IDI-2_FMN, Isopentenyl-diphosphate:dimethylallyl diphosphate isomerase type 2 (IDI-2) FMN-binding domain | Back alignment and domain information |
|---|
Score = 65.6 bits (161), Expect = 6e-12
Identities = 44/151 (29%), Positives = 69/151 (45%), Gaps = 29/151 (19%)
Query: 225 KLPILVKGV---LTAEDVQ----AGAAGIIVSNHG---------ARQLDYVPA------- 261
+P++VK V ++ E + AG I V+ G R D
Sbjct: 178 SVPVIVKEVGFGISRETAKRLADAGVKAIDVAGAGGTSWARVENYRAKDSDQRLAEYFAD 237
Query: 262 ----TIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFIGRPVVYSLAAEGE 317
T +L EV ++ +P+ GG+R G D+ KALALGA + + P + A EGE
Sbjct: 238 WGIPTAASLLEV-RSALPDLPLIASGGIRNGLDIAKALALGADLVGMAGPFL-KAALEGE 295
Query: 318 KGVRRVLEMLREEFELAMALSGCRSLKEITR 348
+ V +E + EE AM L+G ++L E+ +
Sbjct: 296 EAVIETIEQIIEELRTAMFLTGAKNLAELKQ 326
|
Two types of IDIs have been characterized at present. The long known IDI-1 is only dependent on divalent metals for activity, whereas IDI-2 requires a metal, FMN and NADPH. IDI-2 catalyzes the interconversion of isopentenyl diphosphate (IPP) and dimethylallyl diphosphate (DMAPP) in the mevalonate pathway. Length = 326 |
| >gnl|CDD|239202 cd02808, GltS_FMN, Glutamate synthase (GltS) FMN-binding domain | Back alignment and domain information |
|---|
Score = 56.4 bits (137), Expect = 7e-09
Identities = 41/150 (27%), Positives = 56/150 (37%), Gaps = 48/150 (32%)
Query: 242 GAAGIIVSNH-GARQLDYVPATIMALEEVVKATQG-----RIPVFLDGGVRRGTDVFKAL 295
GAA + +H G +P T + L +A R+ + GG+R G DV KAL
Sbjct: 252 GAAPLTFIDHVG------LP-TELGLARAHQALVKNGLRDRVSLIASGGLRTGADVAKAL 304
Query: 296 ALGASGIFIGRPVVYSLAAEG-----------------------------EKGVRRV--- 323
ALGA + IG +L A G E RV
Sbjct: 305 ALGADAVGIGTA---ALIALGCIQARKCHTNTCPVGVATQDPELRRRLDVEGKAERVANY 361
Query: 324 LEMLREEFELAMALSGCRSLKEITRDHIVT 353
L+ L EE A G RSL+ + R ++
Sbjct: 362 LKSLAEELRELAAALGKRSLELLGRSDLLA 391
|
GltS is a complex iron-sulfur flavoprotein that catalyzes the reductive synthesis of L-glutamate from 2-oxoglutarate and L-glutamine via intramolecular channelling of ammonia, a reaction in the plant, yeast and bacterial pathway for ammonia assimilation. It is a multifunctional enzyme that functions through three distinct active centers, carrying out L-glutamine hydrolysis, conversion of 2-oxoglutarate into L-glutamate, and electron uptake from an electron donor. Length = 392 |
| >gnl|CDD|240073 cd04722, TIM_phosphate_binding, TIM barrel proteins share a structurally conserved phosphate binding motif and in general share an eight beta/alpha closed barrel structure | Back alignment and domain information |
|---|
Score = 54.1 bits (130), Expect = 1e-08
Identities = 42/189 (22%), Positives = 68/189 (35%), Gaps = 24/189 (12%)
Query: 139 AQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLTLKNFQGLDLGKMD----- 193
+L + A AG AI + + E D K T G+ L D
Sbjct: 15 VELAKAAAEAGADAIIVGTRSSDPEEAETDDKEVLKEVAAET-DLPLGVQLAINDAAAAV 73
Query: 194 --------EANDSGLAAYVAGQIDRSLSWKDVKWL-QTITKLPILVKGVLTAEDVQA--- 241
A G+ + A + ++ L + + + ++VK T E A
Sbjct: 74 DIAAAAARAAGADGVEIHGAVGYLAREDLELIRELREAVPDVKVVVKLSPTGELAAAAAE 133
Query: 242 --GAAGIIVSNHGARQL--DYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALAL 297
G + + N G D VP + L + + ++PV GG+ D +ALAL
Sbjct: 134 EAGVDEVGLGNGGGGGGGRDAVPIADLLLILAKRGS--KVPVIAGGGINDPEDAAEALAL 191
Query: 298 GASGIFIGR 306
GA G+ +G
Sbjct: 192 GADGVIVGS 200
|
Specific for this family is the conserved phosphate binding site at the edges of strands 7 and 8. The phosphate comes either from the substrate, as in the case of inosine monophosphate dehydrogenase (IMPDH), or from ribulose-5-phosphate 3-epimerase (RPE) or from cofactors, like FMN. Length = 200 |
| >gnl|CDD|223147 COG0069, GltB, Glutamate synthase domain 2 [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Score = 45.3 bits (108), Expect = 3e-05
Identities = 46/191 (24%), Positives = 64/191 (33%), Gaps = 60/191 (31%)
Query: 217 VKWLQTITKL-PILVKGVLT--AEDVQAGAAG-----IIVSNH----GARQL---DYV-- 259
+K L+ I VK V + AG A I + GA L D+
Sbjct: 294 IKDLKEANPWAKISVKLVAEHGVGTIAAGVAKAGADVITIDGADGGTGASPLTSIDHAGI 353
Query: 260 PATIMALEEVVKATQG-----RIPVFLDGGVRRGTDVFKALALGASGIFIGRPVVYSLAA 314
P + L E + ++ + DGG+R G DV KA ALGA + G +L A
Sbjct: 354 P-WELGLAETHQTLVLNGLRDKVKLIADGGLRTGADVAKAAALGADAVGFGTA---ALVA 409
Query: 315 EG-----------------------------EKGVRRVLE----MLREEFELAMALSGCR 341
G E RV+ + E EL +A G R
Sbjct: 410 LGCIMCRVCHTGTCPVGIATQDPELRKRLDVEGKPERVINYFTFVAEELREL-LAALGKR 468
Query: 342 SLKEITRDHIV 352
SL E+ +
Sbjct: 469 SLSELIGRTDL 479
|
Length = 485 |
| >gnl|CDD|238223 cd00381, IMPDH, IMPDH: The catalytic domain of the inosine monophosphate dehydrogenase | Back alignment and domain information |
|---|
Score = 44.8 bits (107), Expect = 3e-05
Identities = 32/110 (29%), Positives = 50/110 (45%), Gaps = 26/110 (23%)
Query: 217 VKWL-QTITKLPILVKGVLTAEDVQ----AGAAGIIV-----SNHGAR--------QLDY 258
+K++ + + ++ V+TAE + AGA G+ V S R Q
Sbjct: 126 IKFIKKKYPNVDVIAGNVVTAEAARDLIDAGADGVKVGIGPGSICTTRIVTGVGVPQ--- 182
Query: 259 VPATIMALEEVVKATQGR-IPVFLDGGVRRGTDVFKALALGASGIFIGRP 307
AT A+ +V A + +PV DGG+R D+ KALA GA + +G
Sbjct: 183 --AT--AVADVAAAARDYGVPVIADGGIRTSGDIVKALAAGADAVMLGSL 228
|
IMPDH catalyzes the NAD-dependent oxidation of inosine 5'-monophosphate (IMP) to xanthosine 5' monophosphate (XMP). It is a rate-limiting step in the de novo synthesis of the guanine nucleotides. There is often a CBS domain inserted in the middle of this domain, which is proposed to play a regulatory role. IMPDH is a key enzyme in the regulation of cell proliferation and differentiation. It has been identified as an attractive target for developing chemotherapeutic agents. Length = 325 |
| >gnl|CDD|110632 pfam01645, Glu_synthase, Conserved region in glutamate synthase | Back alignment and domain information |
|---|
Score = 44.6 bits (106), Expect = 4e-05
Identities = 34/107 (31%), Positives = 48/107 (44%), Gaps = 22/107 (20%)
Query: 227 PILVKGV--LTAEDVQAGAAG-----IIVSNH----GARQL---DYV--PATIMALEEVV 270
PI VK V + AG A I++ H GA + P +AL EV
Sbjct: 204 PISVKLVSGHGVGTIAAGVAKAGADIILIDGHDGGTGASPKTSIKHAGLP-WELALAEVH 262
Query: 271 KAT-----QGRIPVFLDGGVRRGTDVFKALALGASGIFIGRPVVYSL 312
+ + R+ + DGG+R G DV KA ALGA ++IG + +L
Sbjct: 263 QTLVENGLRDRVSLIADGGLRTGADVAKAAALGADAVYIGTAALIAL 309
|
This family represents a region of the glutamate synthase protein. This region is expressed as a separate subunit in the glutamate synthase alpha subunit from archaebacteria, or part of a large multidomain enzyme in other organisms. The aligned region of these proteins contains a putative FMN binding site and Fe-S cluster. Length = 367 |
| >gnl|CDD|233351 TIGR01304, IMP_DH_rel_2, IMP dehydrogenase family protein | Back alignment and domain information |
|---|
Score = 43.3 bits (102), Expect = 1e-04
Identities = 31/108 (28%), Positives = 47/108 (43%), Gaps = 16/108 (14%)
Query: 226 LPILVKGVLTAED----VQAGAAGIIVSNHGARQLDYV-------PATIM----ALEEVV 270
+P++ GV ++ GAAG+IV GA V I A + +
Sbjct: 189 VPVIAGGVNDYTTALHLMRTGAAGVIVGPGGANTTRLVLGIEVPMATAIADVAAARRDYL 248
Query: 271 KATQGR-IPVFLDGGVRRGTDVFKALALGASGIFIGRPVVYSLAAEGE 317
T GR + V DGG+ D+ KA+A GA + +G P+ + A G
Sbjct: 249 DETGGRYVHVIADGGIETSGDLVKAIACGADAVVLGSPLARAAEAPGR 296
|
This model represents a family of proteins, often annotated as a putative IMP dehydrogenase, related to IMP dehydrogenase and GMP reductase. Most species with a member of this family belong to the high GC Gram-positive bacteria, and these also have the IMP dehydrogenase described by TIGRFAMs equivalog model TIGR01302 [Unknown function, General]. Length = 369 |
| >gnl|CDD|233350 TIGR01302, IMP_dehydrog, inosine-5'-monophosphate dehydrogenase | Back alignment and domain information |
|---|
Score = 42.7 bits (101), Expect = 2e-04
Identities = 36/119 (30%), Positives = 50/119 (42%), Gaps = 32/119 (26%)
Query: 206 GQIDRSLSWKDVKWL-QTITKLPILVKGVLTAED----VQAGAAGI-------------I 247
ID +K + +T L I+ V TAE + AGA G+ I
Sbjct: 251 YVIDS------IKEIKKTYPDLDIIAGNVATAEQAKALIDAGADGLRVGIGPGSICTTRI 304
Query: 248 VSNHGARQLDYVPATIMALEEVVKATQGR-IPVFLDGGVRRGTDVFKALALGASGIFIG 305
V+ G Q I A+ +V + IPV DGG+R D+ KALA GA + +G
Sbjct: 305 VAGVGVPQ-------ITAVYDVAEYAAQSGIPVIADGGIRYSGDIVKALAAGADAVMLG 356
|
This model describes IMP dehydrogenase, an enzyme of GMP biosynthesis. This form contains two CBS domains. This model describes a rather tightly conserved cluster of IMP dehydrogenase sequences, many of which are characterized. The model excludes two related families of proteins proposed also to be IMP dehydrogenases, but without characterized members. These are related families are the subject of separate models [Purines, pyrimidines, nucleosides, and nucleotides, Purine ribonucleotide biosynthesis]. Length = 450 |
| >gnl|CDD|240081 cd04730, NPD_like, 2-Nitropropane dioxygenase (NPD), one of the nitroalkane oxidizing enzyme families, catalyzes oxidative denitrification of nitroalkanes to their corresponding carbonyl compounds and nitrites | Back alignment and domain information |
|---|
Score = 41.7 bits (99), Expect = 2e-04
Identities = 23/73 (31%), Positives = 29/73 (39%), Gaps = 12/73 (16%)
Query: 239 VQAGAAGIIVSN-----HGARQLDYVPATIMAL-EEVVKATQGRIPVFLDGGVRRGTDVF 292
AGA ++ H AL EV A IPV GG+ G +
Sbjct: 119 EAAGADALVAQGAEAGGHRGTFD----IGTFALVPEVRDAV--DIPVIAAGGIADGRGIA 172
Query: 293 KALALGASGIFIG 305
ALALGA G+ +G
Sbjct: 173 AALALGADGVQMG 185
|
NDP is a member of the NAD(P)H-dependent flavin oxidoreductase family that reduce a range of alternative electron acceptors. Most use FAD/FMN as a cofactor and NAD(P)H as electron donor. Some contain 4Fe-4S cluster to transfer electron from FAD to FMN. Length = 236 |
| >gnl|CDD|178421 PLN02826, PLN02826, dihydroorotate dehydrogenase | Back alignment and domain information |
|---|
Score = 42.0 bits (99), Expect = 3e-04
Identities = 43/166 (25%), Positives = 69/166 (41%), Gaps = 39/166 (23%)
Query: 215 KDVKWLQTITKLPILVKGV--LTAEDVQAGAA--------GIIVSNHGARQLDYVPATIM 264
+D P+LVK L+ ED++ AA G+I+SN + D V
Sbjct: 252 RDEMQWGEEGPPPLLVKIAPDLSKEDLEDIAAVALALGIDGLIISNTTISRPDSVLGHPH 311
Query: 265 A------------------LEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFIGR 306
A L E+ + T+G+IP+ GGV G D +K + GAS +
Sbjct: 312 ADEAGGLSGKPLFDLSTEVLREMYRLTRGKIPLVGCGGVSSGEDAYKKIRAGASLV---- 367
Query: 307 PVVYS-LAAEGEKGVRRVLEMLREEFELAMALSGCRSLKE-ITRDH 350
+Y+ A EG + R ++ E + G +S++E + DH
Sbjct: 368 -QLYTAFAYEGPALIPR----IKAELAACLERDGFKSIQEAVGADH 408
|
Length = 409 |
| >gnl|CDD|236322 PRK08649, PRK08649, inosine 5-monophosphate dehydrogenase; Validated | Back alignment and domain information |
|---|
Score = 41.7 bits (99), Expect = 3e-04
Identities = 33/109 (30%), Positives = 53/109 (48%), Gaps = 20/109 (18%)
Query: 227 PILVKGVLTAED----VQAGAAGIIV--------SNHGARQLDYVP-AT-IM----ALEE 268
P++V G +T ++ GAAG++V ++ G + VP AT I A +
Sbjct: 189 PVIVGGCVTYTTALHLMRTGAAGVLVGIGPGAACTSRGVLGIG-VPMATAIADVAAARRD 247
Query: 269 VVKATQGR-IPVFLDGGVRRGTDVFKALALGASGIFIGRPVVYSLAAEG 316
+ T GR + V DGG+ D+ KA+A GA + +G P+ + A G
Sbjct: 248 YLDETGGRYVHVIADGGIGTSGDIAKAIACGADAVMLGSPLARAAEAPG 296
|
Length = 368 |
| >gnl|CDD|235507 PRK05567, PRK05567, inosine 5'-monophosphate dehydrogenase; Reviewed | Back alignment and domain information |
|---|
Score = 40.9 bits (97), Expect = 8e-04
Identities = 32/108 (29%), Positives = 47/108 (43%), Gaps = 26/108 (24%)
Query: 217 VKWL-QTITKLPILVKGVLTAEDVQ----AGAAGI-------------IVSNHGARQLDY 258
V+ + + I+ V TAE + AGA + IV+ G Q
Sbjct: 260 VREIKAKYPDVQIIAGNVATAEAARALIEAGADAVKVGIGPGSICTTRIVAGVGVPQ--- 316
Query: 259 VPATIMALEEVVKATQGR-IPVFLDGGVRRGTDVFKALALGASGIFIG 305
I A+ + +A + IPV DGG+R D+ KALA GAS + +G
Sbjct: 317 ----ITAIADAAEAAKKYGIPVIADGGIRYSGDIAKALAAGASAVMLG 360
|
Length = 486 |
| >gnl|CDD|235465 PRK05437, PRK05437, isopentenyl pyrophosphate isomerase; Provisional | Back alignment and domain information |
|---|
Score = 39.8 bits (94), Expect = 0.002
Identities = 15/54 (27%), Positives = 24/54 (44%), Gaps = 4/54 (7%)
Query: 30 AEDQWTLQENRNAFSRILFRPRIL--IDVSKIDMNTTVLGFKISMPIMIAPTAM 81
A + + F + L +D+ ID++T LG K+S P +I AM
Sbjct: 17 ALKEDVEYKKTTGFDDVRLIHNALPELDLDDIDLSTEFLGKKLSAPFLI--NAM 68
|
Length = 352 |
| >gnl|CDD|223245 COG0167, PyrD, Dihydroorotate dehydrogenase [Nucleotide transport and metabolism] | Back alignment and domain information |
|---|
Score = 39.1 bits (92), Expect = 0.002
Identities = 36/171 (21%), Positives = 64/171 (37%), Gaps = 41/171 (23%)
Query: 207 QIDRSLSWKDVKWLQTITKLPILVKGVLTAED----------VQAGAAGIIVSNHGARQL 256
D L K ++ ++ TK+P+ VK L +AGA G+I N +
Sbjct: 143 GQDPELLEKLLEAVKAATKVPVFVK--LAPNITDIDEIAKAAEEAGADGLIAINTTKSGM 200
Query: 257 DYVPATIM---------------------ALEEVVKATQGRIPVFLDGGVRRGTDVFKAL 295
T + E+ K G IP+ GG+ G D + +
Sbjct: 201 KIDLETKKPVLANETGGLSGPPLKPIALRVVAELYKRLGGDIPIIGVGGIETGEDALEFI 260
Query: 296 ALGASGIFIGRPVVYSLAAEGEKGVRRVLEMLREEFELAMALSGCRSLKEI 346
GAS + +G ++Y +G V+ +++ L + G S+++I
Sbjct: 261 LAGASAVQVGTALIY----KGPGIVKEIIKGLAR----WLEEKGFESIQDI 303
|
Length = 310 |
| >gnl|CDD|215936 pfam00478, IMPDH, IMP dehydrogenase / GMP reductase domain | Back alignment and domain information |
|---|
Score = 39.2 bits (92), Expect = 0.003
Identities = 19/43 (44%), Positives = 26/43 (60%), Gaps = 1/43 (2%)
Query: 265 ALEEVVKATQGR-IPVFLDGGVRRGTDVFKALALGASGIFIGR 306
A+ EV A + +PV DGG+R D+ KALA GAS + +G
Sbjct: 314 AVYEVADAARKLGVPVIADGGIRYSGDIAKALAAGASAVMLGS 356
|
This family is involved in biosynthesis of guanosine nucleotide. Members of this family contain a TIM barrel structure. In the inosine monophosphate dehydrogenases 2 CBS domains pfam00571 are inserted in the TIM barrel. This family is a member of the common phosphate binding site TIM barrel family. Length = 467 |
| >gnl|CDD|224981 COG2070, COG2070, Dioxygenases related to 2-nitropropane dioxygenase [General function prediction only] | Back alignment and domain information |
|---|
Score = 38.5 bits (90), Expect = 0.004
Identities = 27/70 (38%), Positives = 35/70 (50%), Gaps = 5/70 (7%)
Query: 240 QAGAAGIIVSNHGA---RQLDYVPATIMAL-EEVVKATQGRIPVFLDGGVRRGTDVFKAL 295
+AGA +I A R + + AL EVV A G IPV GG+ G + AL
Sbjct: 145 RAGADAVIAQGAEAGGHRGGVDLEVSTFALVPEVVDAVDG-IPVIAAGGIADGRGIAAAL 203
Query: 296 ALGASGIFIG 305
ALGA G+ +G
Sbjct: 204 ALGADGVQMG 213
|
Length = 336 |
Conserved Domains Detected by HHsearch
Original result of HHsearch against CDD database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 366 | |||
| KOG0538 | 363 | consensus Glycolate oxidase [Energy production and | 100.0 | |
| PLN02493 | 367 | probable peroxisomal (S)-2-hydroxy-acid oxidase | 100.0 | |
| PLN02535 | 364 | glycolate oxidase | 100.0 | |
| PRK11197 | 381 | lldD L-lactate dehydrogenase; Provisional | 100.0 | |
| TIGR02708 | 367 | L_lactate_ox L-lactate oxidase. Members of this pr | 100.0 | |
| cd04736 | 361 | MDH_FMN Mandelate dehydrogenase (MDH)-like FMN-bin | 100.0 | |
| cd03332 | 383 | LMO_FMN L-Lactate 2-monooxygenase (LMO) FMN-bindin | 100.0 | |
| cd04737 | 351 | LOX_like_FMN L-Lactate oxidase (LOX) FMN-binding d | 100.0 | |
| PF01070 | 356 | FMN_dh: FMN-dependent dehydrogenase; InterPro: IPR | 100.0 | |
| cd02922 | 344 | FCB2_FMN Flavocytochrome b2 (FCB2) FMN-binding dom | 100.0 | |
| PLN02979 | 366 | glycolate oxidase | 100.0 | |
| COG1304 | 360 | idi Isopentenyl diphosphate isomerase (BS_ypgA, MT | 100.0 | |
| cd02809 | 299 | alpha_hydroxyacid_oxid_FMN Family of homologous FM | 100.0 | |
| cd02811 | 326 | IDI-2_FMN Isopentenyl-diphosphate:dimethylallyl di | 100.0 | |
| PRK05437 | 352 | isopentenyl pyrophosphate isomerase; Provisional | 100.0 | |
| TIGR02151 | 333 | IPP_isom_2 isopentenyl-diphosphate delta-isomerase | 100.0 | |
| TIGR01306 | 321 | GMP_reduct_2 guanosine monophosphate reductase, ba | 99.97 | |
| PRK05458 | 326 | guanosine 5'-monophosphate oxidoreductase; Provisi | 99.97 | |
| TIGR01305 | 343 | GMP_reduct_1 guanosine monophosphate reductase, eu | 99.96 | |
| cd02808 | 392 | GltS_FMN Glutamate synthase (GltS) FMN-binding dom | 99.95 | |
| PRK08649 | 368 | inosine 5-monophosphate dehydrogenase; Validated | 99.94 | |
| TIGR01304 | 369 | IMP_DH_rel_2 IMP dehydrogenase family protein. Thi | 99.94 | |
| cd00381 | 325 | IMPDH IMPDH: The catalytic domain of the inosine m | 99.93 | |
| PF00478 | 352 | IMPDH: IMP dehydrogenase / GMP reductase domain; I | 99.92 | |
| PRK06843 | 404 | inosine 5-monophosphate dehydrogenase; Validated | 99.92 | |
| PRK05096 | 346 | guanosine 5'-monophosphate oxidoreductase; Provisi | 99.91 | |
| TIGR01037 | 300 | pyrD_sub1_fam dihydroorotate dehydrogenase (subfam | 99.91 | |
| cd04739 | 325 | DHOD_like Dihydroorotate dehydrogenase (DHOD) like | 99.9 | |
| PRK07259 | 301 | dihydroorotate dehydrogenase 1B; Reviewed | 99.9 | |
| PRK07565 | 334 | dihydroorotate dehydrogenase 2; Reviewed | 99.89 | |
| cd04740 | 296 | DHOD_1B_like Dihydroorotate dehydrogenase (DHOD) c | 99.88 | |
| PRK10415 | 321 | tRNA-dihydrouridine synthase B; Provisional | 99.87 | |
| PLN02495 | 385 | oxidoreductase, acting on the CH-CH group of donor | 99.87 | |
| PRK07107 | 502 | inosine 5-monophosphate dehydrogenase; Validated | 99.87 | |
| COG0167 | 310 | PyrD Dihydroorotate dehydrogenase [Nucleotide tran | 99.87 | |
| COG0042 | 323 | tRNA-dihydrouridine synthase [Translation, ribosom | 99.86 | |
| PTZ00314 | 495 | inosine-5'-monophosphate dehydrogenase; Provisiona | 99.86 | |
| PLN02826 | 409 | dihydroorotate dehydrogenase | 99.86 | |
| TIGR00737 | 319 | nifR3_yhdG putative TIM-barrel protein, nifR3 fami | 99.85 | |
| cd02940 | 299 | DHPD_FMN Dihydropyrimidine dehydrogenase (DHPD) FM | 99.85 | |
| PRK10550 | 312 | tRNA-dihydrouridine synthase C; Provisional | 99.85 | |
| PF01645 | 368 | Glu_synthase: Conserved region in glutamate syntha | 99.85 | |
| TIGR01302 | 450 | IMP_dehydrog inosine-5'-monophosphate dehydrogenas | 99.85 | |
| PRK02506 | 310 | dihydroorotate dehydrogenase 1A; Reviewed | 99.84 | |
| TIGR01303 | 475 | IMP_DH_rel_1 IMP dehydrogenase family protein. Thi | 99.84 | |
| PRK08318 | 420 | dihydropyrimidine dehydrogenase subunit B; Validat | 99.84 | |
| PLN02274 | 505 | inosine-5'-monophosphate dehydrogenase | 99.84 | |
| TIGR00742 | 318 | yjbN tRNA dihydrouridine synthase A. Members of th | 99.83 | |
| PRK05567 | 486 | inosine 5'-monophosphate dehydrogenase; Reviewed | 99.83 | |
| PRK05286 | 344 | dihydroorotate dehydrogenase 2; Reviewed | 99.83 | |
| cd04741 | 294 | DHOD_1A_like Dihydroorotate dehydrogenase (DHOD) c | 99.79 | |
| PF01207 | 309 | Dus: Dihydrouridine synthase (Dus); InterPro: IPR0 | 99.79 | |
| cd04738 | 327 | DHOD_2_like Dihydroorotate dehydrogenase (DHOD) cl | 99.78 | |
| PRK11815 | 333 | tRNA-dihydrouridine synthase A; Provisional | 99.78 | |
| PRK07807 | 479 | inosine 5-monophosphate dehydrogenase; Validated | 99.76 | |
| COG0069 | 485 | GltB Glutamate synthase domain 2 [Amino acid trans | 99.75 | |
| cd02810 | 289 | DHOD_DHPD_FMN Dihydroorotate dehydrogenase (DHOD) | 99.75 | |
| PRK11750 | 1485 | gltB glutamate synthase subunit alpha; Provisional | 99.74 | |
| cd02801 | 231 | DUS_like_FMN Dihydrouridine synthase-like (DUS-lik | 99.73 | |
| PF01180 | 295 | DHO_dh: Dihydroorotate dehydrogenase; InterPro: IP | 99.72 | |
| TIGR01036 | 335 | pyrD_sub2 dihydroorotate dehydrogenase, subfamily | 99.7 | |
| cd02911 | 233 | arch_FMN Archeal FMN-binding domain. This family o | 99.7 | |
| KOG2550 | 503 | consensus IMP dehydrogenase/GMP reductase [Nucleot | 99.66 | |
| KOG1436 | 398 | consensus Dihydroorotate dehydrogenase [Nucleotide | 99.66 | |
| TIGR03151 | 307 | enACPred_II putative enoyl-(acyl-carrier-protein) | 99.65 | |
| PF03060 | 330 | NMO: Nitronate monooxygenase; InterPro: IPR004136 | 99.62 | |
| KOG2335 | 358 | consensus tRNA-dihydrouridine synthase [Translatio | 99.59 | |
| TIGR00736 | 231 | nifR3_rel_arch TIM-barrel protein, putative. Membe | 99.55 | |
| cd04730 | 236 | NPD_like 2-Nitropropane dioxygenase (NPD), one of | 99.46 | |
| COG2070 | 336 | Dioxygenases related to 2-nitropropane dioxygenase | 99.41 | |
| cd04742 | 418 | NPD_FabD 2-Nitropropane dioxygenase (NPD)-like dom | 99.34 | |
| cd04743 | 320 | NPD_PKS 2-Nitropropane dioxygenase (NPD)-like doma | 99.34 | |
| PRK13523 | 337 | NADPH dehydrogenase NamA; Provisional | 99.32 | |
| cd04722 | 200 | TIM_phosphate_binding TIM barrel proteins share a | 99.26 | |
| TIGR02814 | 444 | pfaD_fam PfaD family protein. The protein PfaD is | 99.2 | |
| cd04734 | 343 | OYE_like_3_FMN Old yellow enzyme (OYE)-related FMN | 99.17 | |
| KOG1799 | 471 | consensus Dihydropyrimidine dehydrogenase [Nucleot | 99.15 | |
| cd02932 | 336 | OYE_YqiM_FMN Old yellow enzyme (OYE) YqjM-like FMN | 99.13 | |
| PRK01130 | 221 | N-acetylmannosamine-6-phosphate 2-epimerase; Provi | 99.07 | |
| cd02803 | 327 | OYE_like_FMN_family Old yellow enzyme (OYE)-like F | 99.07 | |
| cd04729 | 219 | NanE N-acetylmannosamine-6-phosphate epimerase (Na | 99.03 | |
| PF04131 | 192 | NanE: Putative N-acetylmannosamine-6-phosphate epi | 99.02 | |
| KOG2333 | 614 | consensus Uncharacterized conserved protein [Gener | 99.01 | |
| cd04747 | 361 | OYE_like_5_FMN Old yellow enzyme (OYE)-related FMN | 99.0 | |
| cd04735 | 353 | OYE_like_4_FMN Old yellow enzyme (OYE)-related FMN | 98.96 | |
| cd02930 | 353 | DCR_FMN 2,4-dienoyl-CoA reductase (DCR) FMN-bindin | 98.95 | |
| cd04733 | 338 | OYE_like_2_FMN Old yellow enzyme (OYE)-related FMN | 98.89 | |
| cd02933 | 338 | OYE_like_FMN Old yellow enzyme (OYE)-like FMN bind | 98.88 | |
| cd02931 | 382 | ER_like_FMN Enoate reductase (ER)-like FMN-binding | 98.86 | |
| PRK04180 | 293 | pyridoxal biosynthesis lyase PdxS; Provisional | 98.73 | |
| TIGR00262 | 256 | trpA tryptophan synthase, alpha subunit. Tryptopha | 98.73 | |
| PRK10605 | 362 | N-ethylmaleimide reductase; Provisional | 98.71 | |
| COG1902 | 363 | NemA NADH:flavin oxidoreductases, Old Yellow Enzym | 98.68 | |
| cd02929 | 370 | TMADH_HD_FMN Trimethylamine dehydrogenase (TMADH) | 98.64 | |
| PRK08255 | 765 | salicylyl-CoA 5-hydroxylase; Reviewed | 98.64 | |
| PRK00278 | 260 | trpC indole-3-glycerol-phosphate synthase; Reviewe | 98.62 | |
| COG3010 | 229 | NanE Putative N-acetylmannosamine-6-phosphate epim | 98.59 | |
| PRK13125 | 244 | trpA tryptophan synthase subunit alpha; Provisiona | 98.53 | |
| CHL00200 | 263 | trpA tryptophan synthase alpha subunit; Provisiona | 98.52 | |
| cd00331 | 217 | IGPS Indole-3-glycerol phosphate synthase (IGPS); | 98.52 | |
| cd04727 | 283 | pdxS PdxS is a subunit of the pyridoxal 5'-phospha | 98.47 | |
| PRK06552 | 213 | keto-hydroxyglutarate-aldolase/keto-deoxy-phosphog | 98.44 | |
| PRK00507 | 221 | deoxyribose-phosphate aldolase; Provisional | 98.4 | |
| cd04724 | 242 | Tryptophan_synthase_alpha Ttryptophan synthase (TR | 98.4 | |
| PRK09140 | 206 | 2-dehydro-3-deoxy-6-phosphogalactonate aldolase; R | 98.39 | |
| PRK13585 | 241 | 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)met | 98.37 | |
| TIGR00343 | 287 | pyridoxal 5'-phosphate synthase, synthase subunit | 98.36 | |
| TIGR00007 | 230 | phosphoribosylformimino-5-aminoimidazole carboxami | 98.36 | |
| PRK01033 | 258 | imidazole glycerol phosphate synthase subunit HisF | 98.32 | |
| PRK13111 | 258 | trpA tryptophan synthase subunit alpha; Provisiona | 98.31 | |
| cd04732 | 234 | HisA HisA. Phosphoribosylformimino-5-aminoimidazol | 98.3 | |
| KOG0399 | 2142 | consensus Glutamate synthase [Amino acid transport | 98.28 | |
| PRK14024 | 241 | phosphoribosyl isomerase A; Provisional | 98.27 | |
| PLN02591 | 250 | tryptophan synthase | 98.27 | |
| cd00452 | 190 | KDPG_aldolase KDPG and KHG aldolase. This family b | 98.24 | |
| cd04731 | 243 | HisF The cyclase subunit of imidazoleglycerol phos | 98.23 | |
| PRK07695 | 201 | transcriptional regulator TenI; Provisional | 98.19 | |
| PF00724 | 341 | Oxidored_FMN: NADH:flavin oxidoreductase / NADH ox | 98.19 | |
| cd04728 | 248 | ThiG Thiazole synthase (ThiG) is the tetrameric en | 98.18 | |
| TIGR00126 | 211 | deoC deoxyribose-phosphate aldolase. Deoxyribose-p | 98.17 | |
| TIGR01304 | 369 | IMP_DH_rel_2 IMP dehydrogenase family protein. Thi | 98.16 | |
| PRK00748 | 233 | 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)met | 98.15 | |
| COG0274 | 228 | DeoC Deoxyribose-phosphate aldolase [Nucleotide tr | 98.13 | |
| PRK00208 | 250 | thiG thiazole synthase; Reviewed | 98.12 | |
| PRK02083 | 253 | imidazole glycerol phosphate synthase subunit HisF | 98.09 | |
| KOG2334 | 477 | consensus tRNA-dihydrouridine synthase [Translatio | 98.08 | |
| cd00959 | 203 | DeoC 2-deoxyribose-5-phosphate aldolase (DERA) of | 98.06 | |
| TIGR03572 | 232 | WbuZ glycosyl amidation-associated protein WbuZ. T | 98.06 | |
| TIGR01182 | 204 | eda Entner-Doudoroff aldolase. 2-deydro-3-deoxypho | 98.05 | |
| COG0159 | 265 | TrpA Tryptophan synthase alpha chain [Amino acid t | 98.03 | |
| cd00945 | 201 | Aldolase_Class_I Class I aldolases. The class I al | 98.01 | |
| PRK07114 | 222 | keto-hydroxyglutarate-aldolase/keto-deoxy-phosphog | 98.01 | |
| PF00218 | 254 | IGPS: Indole-3-glycerol phosphate synthase; InterP | 98.0 | |
| TIGR00735 | 254 | hisF imidazoleglycerol phosphate synthase, cyclase | 97.99 | |
| COG0107 | 256 | HisF Imidazoleglycerol-phosphate synthase [Amino a | 97.97 | |
| cd04731 | 243 | HisF The cyclase subunit of imidazoleglycerol phos | 97.95 | |
| PRK13957 | 247 | indole-3-glycerol-phosphate synthase; Provisional | 97.94 | |
| PRK02083 | 253 | imidazole glycerol phosphate synthase subunit HisF | 97.9 | |
| PRK13587 | 234 | 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)met | 97.9 | |
| TIGR01163 | 210 | rpe ribulose-phosphate 3-epimerase. This family co | 97.89 | |
| TIGR00735 | 254 | hisF imidazoleglycerol phosphate synthase, cyclase | 97.86 | |
| PRK08649 | 368 | inosine 5-monophosphate dehydrogenase; Validated | 97.86 | |
| PRK08883 | 220 | ribulose-phosphate 3-epimerase; Provisional | 97.86 | |
| COG0134 | 254 | TrpC Indole-3-glycerol phosphate synthase [Amino a | 97.85 | |
| PF05690 | 247 | ThiG: Thiazole biosynthesis protein ThiG; InterPro | 97.84 | |
| PRK07455 | 187 | keto-hydroxyglutarate-aldolase/keto-deoxy-phosphog | 97.84 | |
| PLN02411 | 391 | 12-oxophytodienoate reductase | 97.8 | |
| PF00290 | 259 | Trp_syntA: Tryptophan synthase alpha chain; InterP | 97.8 | |
| PRK13802 | 695 | bifunctional indole-3-glycerol phosphate synthase/ | 97.75 | |
| PRK00043 | 212 | thiE thiamine-phosphate pyrophosphorylase; Reviewe | 97.72 | |
| PRK06015 | 201 | keto-hydroxyglutarate-aldolase/keto-deoxy-phosphog | 97.72 | |
| PRK05848 | 273 | nicotinate-nucleotide pyrophosphorylase; Provision | 97.71 | |
| TIGR03128 | 206 | RuMP_HxlA 3-hexulose-6-phosphate synthase. at the | 97.69 | |
| PRK07028 | 430 | bifunctional hexulose-6-phosphate synthase/ribonuc | 97.69 | |
| cd04726 | 202 | KGPDC_HPS 3-Keto-L-gulonate 6-phosphate decarboxyl | 97.67 | |
| PRK00748 | 233 | 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)met | 97.66 | |
| cd00958 | 235 | DhnA Class I fructose-1,6-bisphosphate (FBP) aldol | 97.66 | |
| TIGR00734 | 221 | hisAF_rel hisA/hisF family protein. This alignment | 97.64 | |
| PRK06806 | 281 | fructose-bisphosphate aldolase; Provisional | 97.64 | |
| cd04732 | 234 | HisA HisA. Phosphoribosylformimino-5-aminoimidazol | 97.63 | |
| PRK09427 | 454 | bifunctional indole-3-glycerol phosphate synthase/ | 97.62 | |
| PTZ00170 | 228 | D-ribulose-5-phosphate 3-epimerase; Provisional | 97.61 | |
| PLN02334 | 229 | ribulose-phosphate 3-epimerase | 97.61 | |
| PRK13397 | 250 | 3-deoxy-7-phosphoheptulonate synthase; Provisional | 97.59 | |
| CHL00162 | 267 | thiG thiamin biosynthesis protein G; Validated | 97.57 | |
| PLN02460 | 338 | indole-3-glycerol-phosphate synthase | 97.56 | |
| cd00405 | 203 | PRAI Phosphoribosylanthranilate isomerase (PRAI) c | 97.54 | |
| PRK04128 | 228 | 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)met | 97.53 | |
| cd00564 | 196 | TMP_TenI Thiamine monophosphate synthase (TMP synt | 97.5 | |
| PF01081 | 196 | Aldolase: KDPG and KHG aldolase; InterPro: IPR0008 | 97.5 | |
| PRK07226 | 267 | fructose-bisphosphate aldolase; Provisional | 97.47 | |
| PRK14024 | 241 | phosphoribosyl isomerase A; Provisional | 97.43 | |
| PF01791 | 236 | DeoC: DeoC/LacD family aldolase; InterPro: IPR0029 | 97.41 | |
| TIGR00875 | 213 | fsa_talC_mipB fructose-6-phosphate aldolase, TalC/ | 97.4 | |
| TIGR01859 | 282 | fruc_bis_ald_ fructose-1,6-bisphosphate aldolase, | 97.4 | |
| COG0036 | 220 | Rpe Pentose-5-phosphate-3-epimerase [Carbohydrate | 97.38 | |
| COG0106 | 241 | HisA Phosphoribosylformimino-5-aminoimidazole carb | 97.37 | |
| cd00429 | 211 | RPE Ribulose-5-phosphate 3-epimerase (RPE). This e | 97.36 | |
| PRK05283 | 257 | deoxyribose-phosphate aldolase; Provisional | 97.35 | |
| PRK04302 | 223 | triosephosphate isomerase; Provisional | 97.34 | |
| PRK08745 | 223 | ribulose-phosphate 3-epimerase; Provisional | 97.31 | |
| PF00977 | 229 | His_biosynth: Histidine biosynthesis protein; Inte | 97.31 | |
| PLN02617 | 538 | imidazole glycerol phosphate synthase hisHF | 97.29 | |
| COG0107 | 256 | HisF Imidazoleglycerol-phosphate synthase [Amino a | 97.27 | |
| PRK06512 | 221 | thiamine-phosphate pyrophosphorylase; Provisional | 97.26 | |
| cd00956 | 211 | Transaldolase_FSA Transaldolase-like fructose-6-ph | 97.26 | |
| PRK06801 | 286 | hypothetical protein; Provisional | 97.23 | |
| PRK05742 | 277 | nicotinate-nucleotide pyrophosphorylase; Provision | 97.21 | |
| PRK12595 | 360 | bifunctional 3-deoxy-7-phosphoheptulonate synthase | 97.21 | |
| TIGR00693 | 196 | thiE thiamine-phosphate pyrophosphorylase. This mo | 97.2 | |
| cd04723 | 233 | HisA_HisF Phosphoribosylformimino-5-aminoimidazole | 97.2 | |
| PRK14114 | 241 | 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)met | 97.16 | |
| PRK13585 | 241 | 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)met | 97.15 | |
| TIGR03572 | 232 | WbuZ glycosyl amidation-associated protein WbuZ. T | 97.15 | |
| PRK04169 | 232 | geranylgeranylglyceryl phosphate synthase-like pro | 97.13 | |
| PRK07998 | 283 | gatY putative fructose-1,6-bisphosphate aldolase; | 97.12 | |
| PRK07428 | 288 | nicotinate-nucleotide pyrophosphorylase; Provision | 97.12 | |
| TIGR00078 | 265 | nadC nicotinate-nucleotide pyrophosphorylase. Syno | 97.12 | |
| PRK13587 | 234 | 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)met | 97.09 | |
| PF04481 | 242 | DUF561: Protein of unknown function (DUF561); Inte | 97.09 | |
| COG2022 | 262 | ThiG Uncharacterized enzyme of thiazole biosynthes | 97.09 | |
| PRK01362 | 214 | putative translaldolase; Provisional | 97.08 | |
| cd01568 | 269 | QPRTase_NadC Quinolinate phosphoribosyl transferas | 97.08 | |
| TIGR00007 | 230 | phosphoribosylformimino-5-aminoimidazole carboxami | 97.07 | |
| TIGR01949 | 258 | AroFGH_arch predicted phospho-2-dehydro-3-deoxyhep | 97.07 | |
| PRK02615 | 347 | thiamine-phosphate pyrophosphorylase; Provisional | 97.06 | |
| PRK04128 | 228 | 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)met | 97.05 | |
| TIGR02129 | 253 | hisA_euk phosphoribosylformimino-5-aminoimidazole | 97.02 | |
| cd01572 | 268 | QPRTase Quinolinate phosphoribosyl transferase (QA | 97.01 | |
| PRK07315 | 293 | fructose-bisphosphate aldolase; Provisional | 97.0 | |
| PRK05581 | 220 | ribulose-phosphate 3-epimerase; Validated | 96.99 | |
| PRK09722 | 229 | allulose-6-phosphate 3-epimerase; Provisional | 96.98 | |
| cd01573 | 272 | modD_like ModD; Quinolinate phosphoribosyl transfe | 96.98 | |
| PRK12656 | 222 | fructose-6-phosphate aldolase; Reviewed | 96.97 | |
| PRK12655 | 220 | fructose-6-phosphate aldolase; Reviewed | 96.96 | |
| cd04727 | 283 | pdxS PdxS is a subunit of the pyridoxal 5'-phospha | 96.95 | |
| PRK01033 | 258 | imidazole glycerol phosphate synthase subunit HisF | 96.94 | |
| TIGR01919 | 243 | hisA-trpF 1-(5-phosphoribosyl)-5-[(5-phosphoribosy | 96.92 | |
| PRK13307 | 391 | bifunctional formaldehyde-activating enzyme/3-hexu | 96.92 | |
| KOG1606 | 296 | consensus Stationary phase-induced protein, SOR/SN | 96.9 | |
| COG0269 | 217 | SgbH 3-hexulose-6-phosphate synthase and related p | 96.87 | |
| PRK11840 | 326 | bifunctional sulfur carrier protein/thiazole synth | 96.87 | |
| PF00977 | 229 | His_biosynth: Histidine biosynthesis protein; Inte | 96.83 | |
| PRK12653 | 220 | fructose-6-phosphate aldolase; Reviewed | 96.8 | |
| PRK08005 | 210 | epimerase; Validated | 96.8 | |
| PRK08227 | 264 | autoinducer 2 aldolase; Validated | 96.8 | |
| PRK08072 | 277 | nicotinate-nucleotide pyrophosphorylase; Provision | 96.79 | |
| cd04723 | 233 | HisA_HisF Phosphoribosylformimino-5-aminoimidazole | 96.79 | |
| COG0800 | 211 | Eda 2-keto-3-deoxy-6-phosphogluconate aldolase [Ca | 96.78 | |
| PRK05718 | 212 | keto-hydroxyglutarate-aldolase/keto-deoxy-phosphog | 96.77 | |
| TIGR01769 | 205 | GGGP geranylgeranylglyceryl phosphate synthase. Th | 96.75 | |
| TIGR00343 | 287 | pyridoxal 5'-phosphate synthase, synthase subunit | 96.74 | |
| PRK08385 | 278 | nicotinate-nucleotide pyrophosphorylase; Provision | 96.74 | |
| PF01884 | 230 | PcrB: PcrB family; InterPro: IPR008205 This entry | 96.71 | |
| cd02812 | 219 | PcrB_like PcrB_like proteins. One member of this f | 96.61 | |
| TIGR01768 | 223 | GGGP-family geranylgeranylglyceryl phosphate synth | 96.61 | |
| COG0352 | 211 | ThiE Thiamine monophosphate synthase [Coenzyme met | 96.6 | |
| PLN02446 | 262 | (5-phosphoribosyl)-5-[(5-phosphoribosylamino)methy | 96.59 | |
| PF01729 | 169 | QRPTase_C: Quinolinate phosphoribosyl transferase, | 96.59 | |
| PRK13586 | 232 | 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)met | 96.58 | |
| PF09370 | 268 | TIM-br_sig_trns: TIM-barrel signal transduction pr | 96.57 | |
| PF04131 | 192 | NanE: Putative N-acetylmannosamine-6-phosphate epi | 96.55 | |
| PF02581 | 180 | TMP-TENI: Thiamine monophosphate synthase/TENI; In | 96.52 | |
| TIGR01919 | 243 | hisA-trpF 1-(5-phosphoribosyl)-5-[(5-phosphoribosy | 96.51 | |
| PRK12376 | 236 | putative translaldolase; Provisional | 96.49 | |
| PRK14114 | 241 | 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)met | 96.46 | |
| PRK06106 | 281 | nicotinate-nucleotide pyrophosphorylase; Provision | 96.42 | |
| PRK08185 | 283 | hypothetical protein; Provisional | 96.41 | |
| PF03437 | 254 | BtpA: BtpA family; InterPro: IPR005137 Photosystem | 96.37 | |
| PRK06559 | 290 | nicotinate-nucleotide pyrophosphorylase; Provision | 96.37 | |
| PRK13586 | 232 | 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)met | 96.36 | |
| cd00331 | 217 | IGPS Indole-3-glycerol phosphate synthase (IGPS); | 96.35 | |
| TIGR01182 | 204 | eda Entner-Doudoroff aldolase. 2-deydro-3-deoxypho | 96.28 | |
| cd00947 | 276 | TBP_aldolase_IIB Tagatose-1,6-bisphosphate (TBP) a | 96.28 | |
| TIGR03569 | 329 | NeuB_NnaB N-acetylneuraminate synthase. This famil | 96.27 | |
| PRK09016 | 296 | quinolinate phosphoribosyltransferase; Validated | 96.24 | |
| PRK12738 | 286 | kbaY tagatose-bisphosphate aldolase; Reviewed | 96.23 | |
| cd00381 | 325 | IMPDH IMPDH: The catalytic domain of the inosine m | 96.2 | |
| PRK13813 | 215 | orotidine 5'-phosphate decarboxylase; Provisional | 96.2 | |
| PRK09195 | 284 | gatY tagatose-bisphosphate aldolase; Reviewed | 96.16 | |
| PRK05718 | 212 | keto-hydroxyglutarate-aldolase/keto-deoxy-phosphog | 96.12 | |
| PF00834 | 201 | Ribul_P_3_epim: Ribulose-phosphate 3 epimerase fam | 96.11 | |
| PRK06543 | 281 | nicotinate-nucleotide pyrophosphorylase; Provision | 96.09 | |
| PRK07896 | 289 | nicotinate-nucleotide pyrophosphorylase; Provision | 96.09 | |
| PRK11750 | 1485 | gltB glutamate synthase subunit alpha; Provisional | 96.06 | |
| PLN02446 | 262 | (5-phosphoribosyl)-5-[(5-phosphoribosylamino)methy | 95.98 | |
| PRK13398 | 266 | 3-deoxy-7-phosphoheptulonate synthase; Provisional | 95.94 | |
| TIGR02134 | 236 | transald_staph transaldolase. This small family of | 95.93 | |
| TIGR00167 | 288 | cbbA ketose-bisphosphate aldolases. fructose-bisph | 95.93 | |
| TIGR01858 | 282 | tag_bisphos_ald class II aldolase, tagatose bispho | 95.92 | |
| PRK06978 | 294 | nicotinate-nucleotide pyrophosphorylase; Provision | 95.91 | |
| PRK13306 | 216 | ulaD 3-keto-L-gulonate-6-phosphate decarboxylase; | 95.89 | |
| TIGR03586 | 327 | PseI pseudaminic acid synthase. | 95.86 | |
| PF03932 | 201 | CutC: CutC family; InterPro: IPR005627 Copper tran | 95.84 | |
| cd02931 | 382 | ER_like_FMN Enoate reductase (ER)-like FMN-binding | 95.81 | |
| TIGR00259 | 257 | thylakoid_BtpA membrane complex biogenesis protein | 95.72 | |
| TIGR01334 | 277 | modD putative molybdenum utilization protein ModD. | 95.69 | |
| PRK12737 | 284 | gatY tagatose-bisphosphate aldolase; Reviewed | 95.69 | |
| PLN02617 | 538 | imidazole glycerol phosphate synthase hisHF | 95.67 | |
| PF00478 | 352 | IMPDH: IMP dehydrogenase / GMP reductase domain; I | 95.62 | |
| PRK06852 | 304 | aldolase; Validated | 95.61 | |
| PRK08091 | 228 | ribulose-phosphate 3-epimerase; Validated | 95.53 | |
| PRK06843 | 404 | inosine 5-monophosphate dehydrogenase; Validated | 95.52 | |
| PLN02898 | 502 | HMP-P kinase/thiamin-monophosphate pyrophosphoryla | 95.51 | |
| PLN02417 | 280 | dihydrodipicolinate synthase | 95.5 | |
| PRK06096 | 284 | molybdenum transport protein ModD; Provisional | 95.46 | |
| COG2876 | 286 | AroA 3-deoxy-D-arabino-heptulosonate 7-phosphate ( | 95.4 | |
| COG3010 | 229 | NanE Putative N-acetylmannosamine-6-phosphate epim | 95.34 | |
| PRK09517 | 755 | multifunctional thiamine-phosphate pyrophosphoryla | 95.34 | |
| cd00452 | 190 | KDPG_aldolase KDPG and KHG aldolase. This family b | 95.31 | |
| cd03319 | 316 | L-Ala-DL-Glu_epimerase L-Ala-D/L-Glu epimerase cat | 95.3 | |
| PRK14057 | 254 | epimerase; Provisional | 95.25 | |
| PRK11572 | 248 | copper homeostasis protein CutC; Provisional | 95.25 | |
| COG0214 | 296 | SNZ1 Pyridoxine biosynthesis enzyme [Coenzyme meta | 95.24 | |
| TIGR02313 | 294 | HpaI-NOT-DapA 2,4-dihydroxyhept-2-ene-1,7-dioic ac | 95.22 | |
| PRK08673 | 335 | 3-deoxy-7-phosphoheptulonate synthase; Reviewed | 95.2 | |
| PRK12290 | 437 | thiE thiamine-phosphate pyrophosphorylase; Reviewe | 95.18 | |
| PRK03620 | 303 | 5-dehydro-4-deoxyglucarate dehydratase; Provisiona | 95.17 | |
| TIGR02129 | 253 | hisA_euk phosphoribosylformimino-5-aminoimidazole | 95.13 | |
| PRK01130 | 221 | N-acetylmannosamine-6-phosphate 2-epimerase; Provi | 95.13 | |
| PLN02591 | 250 | tryptophan synthase | 95.1 | |
| PRK06552 | 213 | keto-hydroxyglutarate-aldolase/keto-deoxy-phosphog | 95.1 | |
| PRK08999 | 312 | hypothetical protein; Provisional | 95.08 | |
| TIGR01305 | 343 | GMP_reduct_1 guanosine monophosphate reductase, eu | 95.08 | |
| PRK03512 | 211 | thiamine-phosphate pyrophosphorylase; Provisional | 95.02 | |
| cd00951 | 289 | KDGDH 5-dehydro-4-deoxyglucarate dehydratase, also | 95.01 | |
| PTZ00314 | 495 | inosine-5'-monophosphate dehydrogenase; Provisiona | 95.0 | |
| PLN02274 | 505 | inosine-5'-monophosphate dehydrogenase | 94.98 | |
| PLN02716 | 308 | nicotinate-nucleotide diphosphorylase (carboxylati | 94.98 | |
| TIGR01306 | 321 | GMP_reduct_2 guanosine monophosphate reductase, ba | 94.95 | |
| cd00952 | 309 | CHBPH_aldolase Trans-o-hydroxybenzylidenepyruvate | 94.91 | |
| PRK09250 | 348 | fructose-bisphosphate aldolase; Provisional | 94.91 | |
| cd00408 | 281 | DHDPS-like Dihydrodipicolinate synthase family. A | 94.89 | |
| cd04728 | 248 | ThiG Thiazole synthase (ThiG) is the tetrameric en | 94.83 | |
| cd04729 | 219 | NanE N-acetylmannosamine-6-phosphate epimerase (Na | 94.81 | |
| COG0106 | 241 | HisA Phosphoribosylformimino-5-aminoimidazole carb | 94.76 | |
| COG0329 | 299 | DapA Dihydrodipicolinate synthase/N-acetylneuramin | 94.76 | |
| PRK13396 | 352 | 3-deoxy-7-phosphoheptulonate synthase; Provisional | 94.68 | |
| cd02803 | 327 | OYE_like_FMN_family Old yellow enzyme (OYE)-like F | 94.67 | |
| COG1830 | 265 | FbaB DhnA-type fructose-1,6-bisphosphate aldolase | 94.66 | |
| TIGR01302 | 450 | IMP_dehydrog inosine-5'-monophosphate dehydrogenas | 94.64 | |
| CHL00200 | 263 | trpA tryptophan synthase alpha subunit; Provisiona | 94.58 | |
| PRK07565 | 334 | dihydroorotate dehydrogenase 2; Reviewed | 94.58 | |
| PRK07709 | 285 | fructose-bisphosphate aldolase; Provisional | 94.57 | |
| PRK12857 | 284 | fructose-1,6-bisphosphate aldolase; Reviewed | 94.55 | |
| PRK06015 | 201 | keto-hydroxyglutarate-aldolase/keto-deoxy-phosphog | 94.55 | |
| PRK00208 | 250 | thiG thiazole synthase; Reviewed | 94.52 | |
| TIGR02320 | 285 | PEP_mutase phosphoenolpyruvate phosphomutase. A cl | 94.5 | |
| PRK05096 | 346 | guanosine 5'-monophosphate oxidoreductase; Provisi | 94.49 | |
| TIGR00683 | 290 | nanA N-acetylneuraminate lyase. N-acetylneuraminat | 94.39 | |
| COG2089 | 347 | SpsE Sialic acid synthase [Cell envelope biogenesi | 94.3 | |
| TIGR03249 | 296 | KdgD 5-dehydro-4-deoxyglucarate dehydratase. 5-deh | 94.29 | |
| TIGR00674 | 285 | dapA dihydrodipicolinate synthase. Dihydrodipicoli | 94.14 | |
| COG0157 | 280 | NadC Nicotinate-nucleotide pyrophosphorylase [Coen | 94.1 | |
| PRK04147 | 293 | N-acetylneuraminate lyase; Provisional | 94.09 | |
| cd03316 | 357 | MR_like Mandelate racemase (MR)-like subfamily of | 94.04 | |
| PRK03170 | 292 | dihydrodipicolinate synthase; Provisional | 94.0 | |
| PF01081 | 196 | Aldolase: KDPG and KHG aldolase; InterPro: IPR0008 | 93.98 | |
| KOG4201 | 289 | consensus Anthranilate synthase component II [Amin | 93.98 | |
| cd00954 | 288 | NAL N-Acetylneuraminic acid aldolase, also called | 93.97 | |
| PRK07807 | 479 | inosine 5-monophosphate dehydrogenase; Validated | 93.95 | |
| cd04735 | 353 | OYE_like_4_FMN Old yellow enzyme (OYE)-related FMN | 93.92 | |
| PRK07107 | 502 | inosine 5-monophosphate dehydrogenase; Validated | 93.91 | |
| cd04733 | 338 | OYE_like_2_FMN Old yellow enzyme (OYE)-related FMN | 93.91 | |
| PF00724 | 341 | Oxidored_FMN: NADH:flavin oxidoreductase / NADH ox | 93.86 | |
| COG3142 | 241 | CutC Uncharacterized protein involved in copper re | 93.85 | |
| TIGR00734 | 221 | hisAF_rel hisA/hisF family protein. This alignment | 93.85 | |
| cd02929 | 370 | TMADH_HD_FMN Trimethylamine dehydrogenase (TMADH) | 93.83 | |
| PRK13957 | 247 | indole-3-glycerol-phosphate synthase; Provisional | 93.68 | |
| PF00701 | 289 | DHDPS: Dihydrodipicolinate synthetase family; Inte | 93.6 | |
| TIGR02319 | 294 | CPEP_Pphonmut carboxyvinyl-carboxyphosphonate phos | 93.59 | |
| cd00950 | 284 | DHDPS Dihydrodipicolinate synthase (DHDPS) is a ke | 93.54 | |
| PRK12858 | 340 | tagatose 1,6-diphosphate aldolase; Reviewed | 93.52 | |
| PRK05835 | 307 | fructose-bisphosphate aldolase; Provisional | 93.51 | |
| PF01207 | 309 | Dus: Dihydrouridine synthase (Dus); InterPro: IPR0 | 93.51 | |
| PRK09140 | 206 | 2-dehydro-3-deoxy-6-phosphogalactonate aldolase; R | 93.48 | |
| TIGR01303 | 475 | IMP_DH_rel_1 IMP dehydrogenase family protein. Thi | 93.36 | |
| cd03315 | 265 | MLE_like Muconate lactonizing enzyme (MLE) like su | 93.34 | |
| COG1646 | 240 | Predicted phosphate-binding enzymes, TIM-barrel fo | 93.33 | |
| TIGR00736 | 231 | nifR3_rel_arch TIM-barrel protein, putative. Membe | 93.23 | |
| KOG2335 | 358 | consensus tRNA-dihydrouridine synthase [Translatio | 93.22 | |
| cd00377 | 243 | ICL_PEPM Members of the ICL/PEPM enzyme family cat | 93.06 | |
| PRK03170 | 292 | dihydrodipicolinate synthase; Provisional | 92.94 | |
| PF04898 | 287 | Glu_syn_central: Glutamate synthase central domain | 92.92 | |
| PRK10550 | 312 | tRNA-dihydrouridine synthase C; Provisional | 92.85 | |
| KOG3111 | 224 | consensus D-ribulose-5-phosphate 3-epimerase [Carb | 92.84 | |
| PRK08610 | 286 | fructose-bisphosphate aldolase; Reviewed | 92.75 | |
| cd00408 | 281 | DHDPS-like Dihydrodipicolinate synthase family. A | 92.64 | |
| PRK13111 | 258 | trpA tryptophan synthase subunit alpha; Provisiona | 92.55 | |
| cd04726 | 202 | KGPDC_HPS 3-Keto-L-gulonate 6-phosphate decarboxyl | 92.54 | |
| PRK07114 | 222 | keto-hydroxyglutarate-aldolase/keto-deoxy-phosphog | 92.53 | |
| COG0159 | 265 | TrpA Tryptophan synthase alpha chain [Amino acid t | 92.48 | |
| PRK00230 | 230 | orotidine 5'-phosphate decarboxylase; Reviewed | 92.48 | |
| PRK05458 | 326 | guanosine 5'-monophosphate oxidoreductase; Provisi | 92.29 | |
| cd00950 | 284 | DHDPS Dihydrodipicolinate synthase (DHDPS) is a ke | 92.28 | |
| PRK05567 | 486 | inosine 5'-monophosphate dehydrogenase; Reviewed | 92.21 | |
| PRK08255 | 765 | salicylyl-CoA 5-hydroxylase; Reviewed | 92.18 | |
| PF05690 | 247 | ThiG: Thiazole biosynthesis protein ThiG; InterPro | 92.02 | |
| TIGR00262 | 256 | trpA tryptophan synthase, alpha subunit. Tryptopha | 91.97 | |
| COG2022 | 262 | ThiG Uncharacterized enzyme of thiazole biosynthes | 91.95 | |
| COG4981 | 717 | Enoyl reductase domain of yeast-type FAS1 [Lipid m | 91.9 | |
| cd04739 | 325 | DHOD_like Dihydroorotate dehydrogenase (DHOD) like | 91.86 | |
| PRK09427 | 454 | bifunctional indole-3-glycerol phosphate synthase/ | 91.65 | |
| TIGR01361 | 260 | DAHP_synth_Bsub phospho-2-dehydro-3-deoxyheptonate | 91.62 | |
| COG0135 | 208 | TrpF Phosphoribosylanthranilate isomerase [Amino a | 91.61 | |
| cd00945 | 201 | Aldolase_Class_I Class I aldolases. The class I al | 91.48 | |
| COG0042 | 323 | tRNA-dihydrouridine synthase [Translation, ribosom | 91.37 | |
| PLN02411 | 391 | 12-oxophytodienoate reductase | 91.34 | |
| PF04309 | 175 | G3P_antiterm: Glycerol-3-phosphate responsive anti | 91.31 | |
| COG0434 | 263 | SgcQ Predicted TIM-barrel enzyme [General function | 91.28 | |
| PF00290 | 259 | Trp_syntA: Tryptophan synthase alpha chain; InterP | 91.18 | |
| PF01116 | 287 | F_bP_aldolase: Fructose-bisphosphate aldolase clas | 90.91 | |
| PRK12457 | 281 | 2-dehydro-3-deoxyphosphooctonate aldolase; Provisi | 90.85 | |
| PRK05286 | 344 | dihydroorotate dehydrogenase 2; Reviewed | 90.7 | |
| cd02809 | 299 | alpha_hydroxyacid_oxid_FMN Family of homologous FM | 90.44 | |
| PRK11840 | 326 | bifunctional sulfur carrier protein/thiazole synth | 90.14 | |
| cd00516 | 281 | PRTase_typeII Phosphoribosyltransferase (PRTase) t | 90.05 | |
| PLN02858 | 1378 | fructose-bisphosphate aldolase | 89.9 | |
| TIGR02317 | 285 | prpB methylisocitrate lyase. Members of this famil | 89.7 | |
| PRK11320 | 292 | prpB 2-methylisocitrate lyase; Provisional | 89.67 | |
| CHL00162 | 267 | thiG thiamin biosynthesis protein G; Validated | 89.65 | |
| TIGR03249 | 296 | KdgD 5-dehydro-4-deoxyglucarate dehydratase. 5-deh | 89.59 | |
| cd00439 | 252 | Transaldolase Transaldolase. Enzymes found in the | 89.45 | |
| cd01571 | 302 | NAPRTase_B Nicotinate phosphoribosyltransferase (N | 89.3 | |
| PRK10415 | 321 | tRNA-dihydrouridine synthase B; Provisional | 89.23 | |
| cd00377 | 243 | ICL_PEPM Members of the ICL/PEPM enzyme family cat | 89.2 | |
| PRK08318 | 420 | dihydropyrimidine dehydrogenase subunit B; Validat | 89.19 | |
| cd02810 | 289 | DHOD_DHPD_FMN Dihydroorotate dehydrogenase (DHOD) | 89.16 | |
| cd04740 | 296 | DHOD_1B_like Dihydroorotate dehydrogenase (DHOD) c | 89.12 | |
| TIGR00674 | 285 | dapA dihydrodipicolinate synthase. Dihydrodipicoli | 88.58 | |
| TIGR01521 | 347 | FruBisAldo_II_B fructose-bisphosphate aldolase, cl | 88.52 | |
| cd00951 | 289 | KDGDH 5-dehydro-4-deoxyglucarate dehydratase, also | 88.45 | |
| PRK09196 | 347 | fructose-1,6-bisphosphate aldolase; Reviewed | 88.44 | |
| cd00429 | 211 | RPE Ribulose-5-phosphate 3-epimerase (RPE). This e | 88.22 | |
| cd02940 | 299 | DHPD_FMN Dihydropyrimidine dehydrogenase (DHPD) FM | 88.03 | |
| COG0352 | 211 | ThiE Thiamine monophosphate synthase [Coenzyme met | 87.89 | |
| cd04738 | 327 | DHOD_2_like Dihydroorotate dehydrogenase (DHOD) cl | 87.75 | |
| TIGR00737 | 319 | nifR3_yhdG putative TIM-barrel protein, nifR3 fami | 87.7 | |
| PRK03620 | 303 | 5-dehydro-4-deoxyglucarate dehydratase; Provisiona | 87.53 | |
| PRK00311 | 264 | panB 3-methyl-2-oxobutanoate hydroxymethyltransfer | 87.41 | |
| cd06557 | 254 | KPHMT-like Ketopantoate hydroxymethyltransferase ( | 87.38 | |
| PRK07259 | 301 | dihydroorotate dehydrogenase 1B; Reviewed | 87.24 | |
| PRK13399 | 347 | fructose-1,6-bisphosphate aldolase; Provisional | 87.15 | |
| TIGR03569 | 329 | NeuB_NnaB N-acetylneuraminate synthase. This famil | 87.15 | |
| TIGR01362 | 258 | KDO8P_synth 3-deoxy-8-phosphooctulonate synthase. | 86.59 | |
| TIGR02313 | 294 | HpaI-NOT-DapA 2,4-dihydroxyhept-2-ene-1,7-dioic ac | 86.3 | |
| TIGR00742 | 318 | yjbN tRNA dihydrouridine synthase A. Members of th | 86.17 | |
| COG0329 | 299 | DapA Dihydrodipicolinate synthase/N-acetylneuramin | 85.78 | |
| cd04722 | 200 | TIM_phosphate_binding TIM barrel proteins share a | 85.73 | |
| PLN02979 | 366 | glycolate oxidase | 85.65 | |
| PRK05198 | 264 | 2-dehydro-3-deoxyphosphooctonate aldolase; Provisi | 85.65 | |
| PTZ00411 | 333 | transaldolase-like protein; Provisional | 85.61 | |
| PRK12309 | 391 | transaldolase/EF-hand domain-containing protein; P | 85.57 | |
| PF00701 | 289 | DHDPS: Dihydrodipicolinate synthetase family; Inte | 85.57 | |
| TIGR01037 | 300 | pyrD_sub1_fam dihydroorotate dehydrogenase (subfam | 85.49 | |
| COG0269 | 217 | SgbH 3-hexulose-6-phosphate synthase and related p | 85.21 | |
| KOG2550 | 503 | consensus IMP dehydrogenase/GMP reductase [Nucleot | 85.15 | |
| cd03332 | 383 | LMO_FMN L-Lactate 2-monooxygenase (LMO) FMN-bindin | 85.11 | |
| PRK11197 | 381 | lldD L-lactate dehydrogenase; Provisional | 85.09 | |
| cd02801 | 231 | DUS_like_FMN Dihydrouridine synthase-like (DUS-lik | 85.08 | |
| cd00957 | 313 | Transaldolase_TalAB Transaldolases including both | 84.99 | |
| PRK09250 | 348 | fructose-bisphosphate aldolase; Provisional | 84.97 | |
| PRK06512 | 221 | thiamine-phosphate pyrophosphorylase; Provisional | 84.78 | |
| PRK11320 | 292 | prpB 2-methylisocitrate lyase; Provisional | 84.76 | |
| COG1954 | 181 | GlpP Glycerol-3-phosphate responsive antiterminato | 84.72 | |
| PRK00278 | 260 | trpC indole-3-glycerol-phosphate synthase; Reviewe | 84.72 | |
| cd08205 | 367 | RuBisCO_IV_RLP Ribulose bisphosphate carboxylase l | 84.6 | |
| COG0502 | 335 | BioB Biotin synthase and related enzymes [Coenzyme | 84.35 | |
| PF00218 | 254 | IGPS: Indole-3-glycerol phosphate synthase; InterP | 84.32 | |
| PLN02493 | 367 | probable peroxisomal (S)-2-hydroxy-acid oxidase | 83.87 | |
| PF13714 | 238 | PEP_mutase: Phosphoenolpyruvate phosphomutase; PDB | 83.68 | |
| cd06556 | 240 | ICL_KPHMT Members of the ICL/PEPM_KPHMT enzyme sup | 83.68 | |
| TIGR02317 | 285 | prpB methylisocitrate lyase. Members of this famil | 83.67 | |
| PLN02334 | 229 | ribulose-phosphate 3-epimerase | 83.47 | |
| PRK05437 | 352 | isopentenyl pyrophosphate isomerase; Provisional | 83.45 | |
| cd02811 | 326 | IDI-2_FMN Isopentenyl-diphosphate:dimethylallyl di | 83.27 | |
| COG0167 | 310 | PyrD Dihydroorotate dehydrogenase [Nucleotide tran | 83.2 | |
| cd00564 | 196 | TMP_TenI Thiamine monophosphate synthase (TMP synt | 83.19 | |
| PRK07084 | 321 | fructose-bisphosphate aldolase; Provisional | 83.15 | |
| PLN02535 | 364 | glycolate oxidase | 83.03 | |
| PRK15452 | 443 | putative protease; Provisional | 83.01 | |
| cd04736 | 361 | MDH_FMN Mandelate dehydrogenase (MDH)-like FMN-bin | 82.95 | |
| PRK00043 | 212 | thiE thiamine-phosphate pyrophosphorylase; Reviewe | 82.69 | |
| cd00953 | 279 | KDG_aldolase KDG (2-keto-3-deoxygluconate) aldolas | 82.62 | |
| TIGR00640 | 132 | acid_CoA_mut_C methylmalonyl-CoA mutase C-terminal | 82.52 | |
| COG1411 | 229 | Uncharacterized protein related to proFAR isomeras | 82.2 | |
| COG1830 | 265 | FbaB DhnA-type fructose-1,6-bisphosphate aldolase | 82.16 | |
| COG0516 | 170 | GuaB IMP dehydrogenase/GMP reductase [Nucleotide t | 82.07 | |
| PRK07455 | 187 | keto-hydroxyglutarate-aldolase/keto-deoxy-phosphog | 81.71 | |
| KOG0623 | 541 | consensus Glutamine amidotransferase/cyclase [Amin | 81.44 | |
| PRK01222 | 210 | N-(5'-phosphoribosyl)anthranilate isomerase; Provi | 81.23 | |
| COG2070 | 336 | Dioxygenases related to 2-nitropropane dioxygenase | 81.18 | |
| PF00563 | 236 | EAL: EAL domain; InterPro: IPR001633 This domain i | 81.15 | |
| COG0176 | 239 | MipB Transaldolase [Carbohydrate transport and met | 81.03 | |
| PRK05581 | 220 | ribulose-phosphate 3-epimerase; Validated | 80.96 | |
| TIGR02320 | 285 | PEP_mutase phosphoenolpyruvate phosphomutase. A cl | 80.79 | |
| PRK05269 | 318 | transaldolase B; Provisional | 80.74 | |
| COG5564 | 276 | Predicted TIM-barrel enzyme, possibly a dioxygenas | 80.73 | |
| TIGR01769 | 205 | GGGP geranylgeranylglyceryl phosphate synthase. Th | 80.67 | |
| KOG4175 | 268 | consensus Tryptophan synthase alpha chain [Amino a | 80.3 | |
| PRK12346 | 316 | transaldolase A; Provisional | 80.13 | |
| cd04824 | 320 | eu_ALAD_PBGS_cysteine_rich Porphobilinogen synthas | 80.09 |
| >KOG0538 consensus Glycolate oxidase [Energy production and conversion] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.5e-91 Score=642.79 Aligned_cols=353 Identities=76% Similarity=1.168 Sum_probs=337.1
Q ss_pred CCChHHHHHHHHHhCCccchhhhcCCccchhhHHHhHhcccceeeeccccCCCCCCccceeEcCcccCCceEeccccccc
Q 017781 4 ITNVMEYEAIAKEKLPKMVFDYYASGAEDQWTLQENRNAFSRILFRPRILIDVSKIDMNTTVLGFKISMPIMIAPTAMQK 83 (366)
Q Consensus 4 ~~~~~d~~~~A~~~l~~~~~~y~~~ga~~~~t~~~N~~~f~~i~l~pr~l~~~~~vd~st~l~g~~l~~Pi~iApm~~~~ 83 (366)
++|++|||+.|+++||+.+|||+.|||+|+.|+++|+++|.+|.|+||+|+|++.+|+||+++|.++++||+|||++++.
T Consensus 1 lv~~~dfe~~A~~~L~K~a~dyy~sgA~d~~Tl~~N~~AF~ri~~rPr~L~dVs~iD~sTtvlG~~i~~Pi~iapTa~qk 80 (363)
T KOG0538|consen 1 LVNVDDFEALAKQQLPKMAYDYYESGAEDQETLDENINAFRRILFRPRILRDVSKIDTSTTVLGQKISAPIMIAPTAMQK 80 (363)
T ss_pred CccHHHHHHHHHHhhhHHHHHHHhcCCcchhhHHHHHHHHHhhhccchhheecccccccceeccccccceeEEcchHHHh
Confidence 47999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccCChhhHHHHHHHHHcCCceecCCCCCCCHHHHhccCC-CceEEEeeecCCHHHHHHHHHHHHHcCCCEEEEecCCCCC
Q 017781 84 MAHPEGEYATARAASAAGTIMTLSSWSTSSVEEVASTGP-GIRFFQLYVYKDRNVVAQLVRRAERAGFKAIALTVDTPRL 162 (366)
Q Consensus 84 l~~~~~e~~la~aa~~~G~~~~vs~~~~~~~e~i~~~~~-~~~~~Qly~~~d~~~~~~~l~ra~~~G~~ai~vtvd~p~~ 162 (366)
++|||||..+|++|.+.|++|++|+++++++|||.+++| +..|||||+++|++++.++++|||++|++++++|+|+|..
T Consensus 81 ma~pdGE~~taraa~~~~~~~i~Ss~at~S~EdI~~aap~~~rwfQLYvykdr~It~~Lv~raEk~GfkAlvlTvDtP~l 160 (363)
T KOG0538|consen 81 MAHPDGELATARAAQAAGTIMILSSWATCSVEDIASAAPPGIRWFQLYVYKDRDITEQLVKRAEKAGFKALVLTVDTPRL 160 (363)
T ss_pred ccCCcccHHHHHHHHhcCCcEEEechhcCCHHHHHhhCCCCcEEEEEEecCchHHHHHHHHHHHHcCceEEEEEeccccc
Confidence 999999999999999999999999999999999999886 8899999999999999999999999999999999999999
Q ss_pred cchhHHHhhhcCCCCccccccccccccCCCccccchhhHHHhhhccCCCCCHHHHHHHHHhcCCCEEEEeccCHHH----
Q 017781 163 GRREADIKNRFTLPPFLTLKNFQGLDLGKMDEANDSGLAAYVAGQIDRSLSWKDVKWLQTITKLPILVKGVLTAED---- 238 (366)
Q Consensus 163 g~r~~d~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~i~~lr~~~~~pv~vK~v~~~~d---- 238 (366)
|+|+.|++|+|.+|+.++++|+.+.......+...++...+++.+.|++++|++|+|+|+.|++||++||+++.||
T Consensus 161 G~R~~D~~n~f~lp~~l~lknfe~~~~~~v~~~~~sg~~~~~~~~id~Sl~W~Di~wLr~~T~LPIvvKGilt~eDA~~A 240 (363)
T KOG0538|consen 161 GRRESDIKNKFSLPKNLTLKNFEGLKLTEVEEAGDSGLAAYVSSQIDPSLSWKDIKWLRSITKLPIVVKGVLTGEDARKA 240 (363)
T ss_pred cCchhhhhhcccCCcccccccccccccccCCcccchhhhhhhhcCCCCCCChhhhHHHHhcCcCCeEEEeecccHHHHHH
Confidence 9999999999999998988888776544444445567778999999999999999999999999999999999998
Q ss_pred HHcCCcEEEEcCCCccCCCCCcchHHHHHHHHHHcCCCceEEEecCCCCHHHHHHHHHhCcCEEEecHHHHHHhhhcCHH
Q 017781 239 VQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFIGRPVVYSLAAEGEK 318 (366)
Q Consensus 239 ~~aGad~I~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~i~vi~~GGI~~~~dv~kalalGAd~V~igr~~l~~l~~~G~~ 318 (366)
.++|+++|+||||||||+|..|+++++|+|+.+++.+++||+.|||||+|.||+|||||||.+|.+|||++|++++.|+.
T Consensus 241 ve~G~~GIIVSNHGgRQlD~vpAtI~~L~Evv~aV~~ri~V~lDGGVR~G~DVlKALALGAk~VfiGRP~v~gLA~~Ge~ 320 (363)
T KOG0538|consen 241 VEAGVAGIIVSNHGGRQLDYVPATIEALPEVVKAVEGRIPVFLDGGVRRGTDVLKALALGAKGVFIGRPIVWGLAAKGEA 320 (363)
T ss_pred HHhCCceEEEeCCCccccCcccchHHHHHHHHHHhcCceEEEEecCcccchHHHHHHhcccceEEecCchheeeccccch
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHcCCCChhhhcccceeeccC
Q 017781 319 GVRRVLEMLREEFELAMALSGCRSLKEITRDHIVTEWD 356 (366)
Q Consensus 319 gv~~~~~~l~~el~~~m~~~G~~~l~el~~~~l~~~~~ 356 (366)
||+++++.|++|++.+|++.||+|++|+++..+....+
T Consensus 321 GV~~vl~iL~~efe~tmaLsGc~sv~ei~~~~v~~~~s 358 (363)
T KOG0538|consen 321 GVKKVLDILRDEFELTMALSGCRSVKEITRNHVLTEES 358 (363)
T ss_pred hHHHHHHHHHHHHHHHHHHhCCCchhhhCccceeechh
Confidence 99999999999999999999999999999886554433
|
|
| >PLN02493 probable peroxisomal (S)-2-hydroxy-acid oxidase | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.5e-84 Score=626.48 Aligned_cols=358 Identities=91% Similarity=1.354 Sum_probs=326.6
Q ss_pred CCCChHHHHHHHHHhCCccchhhhcCCccchhhHHHhHhcccceeeeccccCCCCCCccceeEcCcccCCceEecccccc
Q 017781 3 EITNVMEYEAIAKEKLPKMVFDYYASGAEDQWTLQENRNAFSRILFRPRILIDVSKIDMNTTVLGFKISMPIMIAPTAMQ 82 (366)
Q Consensus 3 ~~~~~~d~~~~A~~~l~~~~~~y~~~ga~~~~t~~~N~~~f~~i~l~pr~l~~~~~vd~st~l~g~~l~~Pi~iApm~~~ 82 (366)
.++|++|||+.||++||+.+|+|++||++||.|+++|+++|++|.|+||+|+|++++||+|++||+++++||++||+|++
T Consensus 2 ~~~~i~D~e~~Ar~~lp~~~~~y~~gga~de~t~~~N~~af~r~~l~PRvLrdv~~~d~~t~~lG~~~~~Pi~iAP~g~~ 81 (367)
T PLN02493 2 EITNVTEYDAIAKQKLPKMVYDYYASGAEDQWTLQENRNAFARILFRPRILIDVSKIDMTTTVLGFKISMPIMVAPTAMQ 81 (367)
T ss_pred ccCCHHHHHHHHHHhCCHHHHHHHccCcchhHHHHHHHHHHHhCCeecccccCCCCCCCceEECCccccccceechHHHH
Confidence 46899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccCChhhHHHHHHHHHcCCceecCCCCCCCHHHHhccCCCceEEEeeecCCHHHHHHHHHHHHHcCCCEEEEecCCCCC
Q 017781 83 KMAHPEGEYATARAASAAGTIMTLSSWSTSSVEEVASTGPGIRFFQLYVYKDRNVVAQLVRRAERAGFKAIALTVDTPRL 162 (366)
Q Consensus 83 ~l~~~~~e~~la~aa~~~G~~~~vs~~~~~~~e~i~~~~~~~~~~Qly~~~d~~~~~~~l~ra~~~G~~ai~vtvd~p~~ 162 (366)
++.||++|.++|++|+++|++|++|+.+++++|||++..+++.|||||+++|++.++++++||+++||++|++|+|+|+.
T Consensus 82 ~l~hp~gE~a~AraA~~~gi~~~lSt~ss~slEeva~~~~~~~wfQlY~~~Dr~~~~~li~RA~~aG~~alvlTvD~p~~ 161 (367)
T PLN02493 82 KMAHPDGEYATARAASAAGTIMTLSSWATSSVEEVASTGPGIRFFQLYVYKNRNVVEQLVRRAERAGFKAIALTVDTPRL 161 (367)
T ss_pred hhcCCchHHHHHHHHHHcCCCeeecCcccCCHHHHHhcCCCCcEEEEeecCCHHHHHHHHHHHHHcCCCEEEEEcCCCCC
Confidence 99999999999999999999999999999999999987667899999999999999999999999999999999999999
Q ss_pred cchhHHHhhhcCCCCccccccccccccCCCccccchhhHHHhhhccCCCCCHHHHHHHHHhcCCCEEEEeccCHHH----
Q 017781 163 GRREADIKNRFTLPPFLTLKNFQGLDLGKMDEANDSGLAAYVAGQIDRSLSWKDVKWLQTITKLPILVKGVLTAED---- 238 (366)
Q Consensus 163 g~r~~d~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~i~~lr~~~~~pv~vK~v~~~~d---- 238 (366)
|+|++|++|+|.+|..+..+++..............+...+...+.++.++|++|+|||+.|++||++|++.+.+|
T Consensus 162 G~R~~d~r~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~tW~di~wlr~~~~~PiivKgV~~~~dA~~a 241 (367)
T PLN02493 162 GRRESDIKNRFTLPPNLTLKNFEGLDLGKMDEANDSGLASYVAGQIDRTLSWKDVQWLQTITKLPILVKGVLTGEDARIA 241 (367)
T ss_pred CcchhhhcccCCCCcccchhhhhhccccCCCcccchhHHHHHhhcCCCCCCHHHHHHHHhccCCCEEeecCCCHHHHHHH
Confidence 9999999999998876665554321110111111222334555567889999999999999999999999999998
Q ss_pred HHcCCcEEEEcCCCccCCCCCcchHHHHHHHHHHcCCCceEEEecCCCCHHHHHHHHHhCcCEEEecHHHHHHhhhcCHH
Q 017781 239 VQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFIGRPVVYSLAAEGEK 318 (366)
Q Consensus 239 ~~aGad~I~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~i~vi~~GGI~~~~dv~kalalGAd~V~igr~~l~~l~~~G~~ 318 (366)
.++|+|+|+||||||||+|+.++++++|+++++++.+++|||+|||||+|.|++|||+|||++|+|||||+|+++..|++
T Consensus 242 ~~~Gvd~I~VsnhGGrqld~~~~t~~~L~ei~~av~~~~~vi~dGGIr~G~Dv~KALALGA~aV~iGr~~l~~l~~~G~~ 321 (367)
T PLN02493 242 IQAGAAGIIVSNHGARQLDYVPATISALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFIGRPVVFSLAAEGEA 321 (367)
T ss_pred HHcCCCEEEECCCCCCCCCCchhHHHHHHHHHHHhCCCCeEEEeCCcCcHHHHHHHHHcCCCEEEEcHHHHHHHHhcCHH
Confidence 99999999999999999999999999999999988778999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHcCCCChhhhcccceeeccCCCCC
Q 017781 319 GVRRVLEMLREEFELAMALSGCRSLKEITRDHIVTEWDASLP 360 (366)
Q Consensus 319 gv~~~~~~l~~el~~~m~~~G~~~l~el~~~~l~~~~~~~~~ 360 (366)
||+++++.+++||+.+|.++|++++.|+++..+......++|
T Consensus 322 gv~~~l~~l~~el~~~m~l~G~~~i~~l~~~~~~~~~~~~~~ 363 (367)
T PLN02493 322 GVRKVLQMLRDEFELTMALSGCRSLKEISRNHITTEWDTPRP 363 (367)
T ss_pred HHHHHHHHHHHHHHHHHHHhCCCCHHHhChhhhhHHHhccCc
Confidence 999999999999999999999999999999888665544433
|
|
| >PLN02535 glycolate oxidase | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.7e-81 Score=605.48 Aligned_cols=354 Identities=65% Similarity=1.029 Sum_probs=322.8
Q ss_pred CCCCChHHHHHHHHHhCCccchhhhcCCccchhhHHHhHhcccceeeeccccCCCCCCccceeEcCcccCCceEeccccc
Q 017781 2 GEITNVMEYEAIAKEKLPKMVFDYYASGAEDQWTLQENRNAFSRILFRPRILIDVSKIDMNTTVLGFKISMPIMIAPTAM 81 (366)
Q Consensus 2 ~~~~~~~d~~~~A~~~l~~~~~~y~~~ga~~~~t~~~N~~~f~~i~l~pr~l~~~~~vd~st~l~g~~l~~Pi~iApm~~ 81 (366)
++++|++|||+.||++||+.+|+|++||++||.|+++|+++|++|.|+||+|+|++++||+|++||+++++||+|||+|+
T Consensus 3 ~~~~~i~d~~~~A~~~lp~~~~~Y~~gga~~e~t~~~N~~af~~~~l~Pr~L~dv~~~d~~t~~lG~~~~~P~~iaP~g~ 82 (364)
T PLN02535 3 DEIVNVNEFQELAKQALPKMYYDFYAGGAEDQHTLKENVQAFRRITFRPRVLVDVSKIDMSTTILGYTISAPIMIAPTAM 82 (364)
T ss_pred cccCCHHHHHHHHHHhCCHHHHHHHhcCCcccHHHHHHHHHHHhCCeecccccCCCCCCCceEECCccccccceechHHH
Confidence 57899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccccCChhhHHHHHHHHHcCCceecCCCCCCCHHHHhccCCCceEEEeeecCCHHHHHHHHHHHHHcCCCEEEEecCCCC
Q 017781 82 QKMAHPEGEYATARAASAAGTIMTLSSWSTSSVEEVASTGPGIRFFQLYVYKDRNVVAQLVRRAERAGFKAIALTVDTPR 161 (366)
Q Consensus 82 ~~l~~~~~e~~la~aa~~~G~~~~vs~~~~~~~e~i~~~~~~~~~~Qly~~~d~~~~~~~l~ra~~~G~~ai~vtvd~p~ 161 (366)
+++.||++|.++|++|+++|+++++|+++++++|||++..+++.|||||+++|++.+.++++||+++||++|++|+|+|+
T Consensus 83 ~~l~hp~gE~a~AraA~~~g~~~~lSt~s~~slEeva~~~~~~~wfQlY~~~dr~~~~~ll~RA~~aG~~alvlTvD~p~ 162 (364)
T PLN02535 83 HKLAHPEGEIATARAAAACNTIMVLSFMASCTVEEVASSCNAVRFLQLYVYKRRDIAAQLVQRAEKNGYKAIVLTADVPR 162 (364)
T ss_pred hcccCcchHHHHHHHHHHcCCCeEecCcccCCHHHHHhcCCCCeEEEEeccCCHHHHHHHHHHHHHcCCCEEEEeecCCC
Confidence 99999999999999999999999999999999999998766789999999999999999999999999999999999999
Q ss_pred CcchhHHHhhhcCCCCccccccccccccCCCccccchhhHHHhhhccCCCCCHHHHHHHHHhcCCCEEEEeccCHHH---
Q 017781 162 LGRREADIKNRFTLPPFLTLKNFQGLDLGKMDEANDSGLAAYVAGQIDRSLSWKDVKWLQTITKLPILVKGVLTAED--- 238 (366)
Q Consensus 162 ~g~r~~d~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~i~~lr~~~~~pv~vK~v~~~~d--- 238 (366)
.|+|++|++|+|.+|. .+++..............+...+.....++.++|++|+|+|+.|++||++|++.+++|
T Consensus 163 ~g~R~~d~r~~~~~p~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~tW~~i~~lr~~~~~PvivKgV~~~~dA~~ 239 (364)
T PLN02535 163 LGRREADIKNKMISPQ---LKNFEGLLSTEVVSDKGSGLEAFASETFDASLSWKDIEWLRSITNLPILIKGVLTREDAIK 239 (364)
T ss_pred CCCchhhhhcCCCCcc---hhhHhhhhccCCCccccccHHHHHHhccCCCCCHHHHHHHHhccCCCEEEecCCCHHHHHH
Confidence 9999999999998883 2332211100001111122344555566889999999999999999999999999998
Q ss_pred -HHcCCcEEEEcCCCccCCCCCcchHHHHHHHHHHcCCCceEEEecCCCCHHHHHHHHHhCcCEEEecHHHHHHhhhcCH
Q 017781 239 -VQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFIGRPVVYSLAAEGE 317 (366)
Q Consensus 239 -~~aGad~I~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~i~vi~~GGI~~~~dv~kalalGAd~V~igr~~l~~l~~~G~ 317 (366)
.++|+|+|+|+||||+++++++++++.|+++++++.+++|||++|||+++.|++|||++||++|++||||+|+++..|+
T Consensus 240 a~~~GvD~I~vsn~GGr~~d~~~~t~~~L~ev~~av~~~ipVi~dGGIr~g~Dv~KALalGA~aV~vGr~~l~~l~~~g~ 319 (364)
T PLN02535 240 AVEVGVAGIIVSNHGARQLDYSPATISVLEEVVQAVGGRVPVLLDGGVRRGTDVFKALALGAQAVLVGRPVIYGLAAKGE 319 (364)
T ss_pred HHhcCCCEEEEeCCCcCCCCCChHHHHHHHHHHHHHhcCCCEEeeCCCCCHHHHHHHHHcCCCEEEECHHHHhhhhhccH
Confidence 9999999999999999999999999999999998866899999999999999999999999999999999999998999
Q ss_pred HHHHHHHHHHHHHHHHHHHHcCCCChhhhcccceeeccCCC
Q 017781 318 KGVRRVLEMLREEFELAMALSGCRSLKEITRDHIVTEWDAS 358 (366)
Q Consensus 318 ~gv~~~~~~l~~el~~~m~~~G~~~l~el~~~~l~~~~~~~ 358 (366)
+|++++++.+++||+.+|.++|+.+++||++..++...|+-
T Consensus 320 ~gv~~~l~~l~~el~~~m~l~G~~~i~el~~~~l~~~~~~~ 360 (364)
T PLN02535 320 DGVRKVIEMLKDELEITMALSGCPSVKDITRSHVRTERERL 360 (364)
T ss_pred HHHHHHHHHHHHHHHHHHHHhCCCCHHHhhhhhccchHhhh
Confidence 99999999999999999999999999999998887665543
|
|
| >PRK11197 lldD L-lactate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-80 Score=607.32 Aligned_cols=350 Identities=38% Similarity=0.656 Sum_probs=317.7
Q ss_pred CCCChHHHHHHHHHhCCccchhhhcCCccchhhHHHhHhcccceeeeccccCCCCCCccceeEcCcccCCceEecccccc
Q 017781 3 EITNVMEYEAIAKEKLPKMVFDYYASGAEDQWTLQENRNAFSRILFRPRILIDVSKIDMNTTVLGFKISMPIMIAPTAMQ 82 (366)
Q Consensus 3 ~~~~~~d~~~~A~~~l~~~~~~y~~~ga~~~~t~~~N~~~f~~i~l~pr~l~~~~~vd~st~l~g~~l~~Pi~iApm~~~ 82 (366)
.++|++|||+.||++||+.+|+|++||++||.|+++|+++|++|.|+||+|+|++++||+|++||+++++||++||++++
T Consensus 2 ~~~~i~D~~~~Ar~~Lp~~~~~Y~~gga~de~t~~~N~~af~~~~l~PR~L~dv~~~d~~t~llG~~~~~Pi~iAP~g~~ 81 (381)
T PRK11197 2 IISAASDYRAAAQRRLPPFLFHYIDGGAYAEYTLRRNVEDLADIALRQRVLKDMSDLSLETTLFGEKLSMPVALAPVGLT 81 (381)
T ss_pred ccCCHHHHHHHHHHhCCHHHHHHHhcCcchHHHHHHHHHHHHhcceecccccCCCCCCCceEECCcccccchhhChHHHh
Confidence 46899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccCChhhHHHHHHHHHcCCceecCCCCCCCHHHHhccCCCceEEEeeecCCHHHHHHHHHHHHHcCCCEEEEecCCCCC
Q 017781 83 KMAHPEGEYATARAASAAGTIMTLSSWSTSSVEEVASTGPGIRFFQLYVYKDRNVVAQLVRRAERAGFKAIALTVDTPRL 162 (366)
Q Consensus 83 ~l~~~~~e~~la~aa~~~G~~~~vs~~~~~~~e~i~~~~~~~~~~Qly~~~d~~~~~~~l~ra~~~G~~ai~vtvd~p~~ 162 (366)
++.||++|.++|++|++.|++|++|+.+++++|||++..+++.|||||+++|++.++++++||+++||++|++|||+|+.
T Consensus 82 ~l~hp~gE~~~AraA~~~g~~~~lSt~ss~slEeia~~~~~~~wfQlY~~~Dr~~~~~li~RA~~aG~~alvlTVD~pv~ 161 (381)
T PRK11197 82 GMYARRGEVQAARAADAKGIPFTLSTVSVCPIEEVAPAIKRPMWFQLYVLRDRGFMRNALERAKAAGCSTLVFTVDMPVP 161 (381)
T ss_pred hccCCchHHHHHHHHHHcCCCEEeeCCCcCCHHHHHhccCCCeEEEEEecCCHHHHHHHHHHHHHcCCCEEEEecCCCCC
Confidence 99999999999999999999999999999999999987667899999999999999999999999999999999999999
Q ss_pred cchhHHHhhhcCCCCccccccccccc-----------------cCCCcc-----ccchhhHHHhhhccCCCCCHHHHHHH
Q 017781 163 GRREADIKNRFTLPPFLTLKNFQGLD-----------------LGKMDE-----ANDSGLAAYVAGQIDRSLSWKDVKWL 220 (366)
Q Consensus 163 g~r~~d~~~~~~~p~~~~~~~~~~~~-----------------~~~~~~-----~~~~~~~~~~~~~~d~~~~~~~i~~l 220 (366)
|+|++|++++|.+|.. +++++.+.. ..+... ........+...+.++.++|++|+||
T Consensus 162 G~Rerd~rn~~~~p~~-~~~~~~~~~~~p~w~~~~~~~~~~~~~~n~~~~~~~~~g~~~~~~~~~~~~~~~ltW~di~~l 240 (381)
T PRK11197 162 GARYRDAHSGMSGPNA-AMRRYLQAVTHPQWAWDVGLNGRPHDLGNISAYLGKPTGLEDYIGWLGNNFDPSISWKDLEWI 240 (381)
T ss_pred CCChhhhhcCCCCCCc-hhhhHHhhhcCchhhhhhccccCCCcccccccccccccchhHHHHHHHhccCCCCCHHHHHHH
Confidence 9999999999988842 333321100 001000 00111223455556889999999999
Q ss_pred HHhcCCCEEEEeccCHHH----HHcCCcEEEEcCCCccCCCCCcchHHHHHHHHHHcCCCceEEEecCCCCHHHHHHHHH
Q 017781 221 QTITKLPILVKGVLTAED----VQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALA 296 (366)
Q Consensus 221 r~~~~~pv~vK~v~~~~d----~~aGad~I~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~i~vi~~GGI~~~~dv~kala 296 (366)
|+.|++||++|++++.++ .++|+|+|+||||||++++..+++++.|+++++++.+++|||+||||+++.||+|||+
T Consensus 241 r~~~~~pvivKgV~s~~dA~~a~~~Gvd~I~Vs~hGGr~~d~~~~t~~~L~~i~~a~~~~~~vi~dGGIr~g~Di~KALa 320 (381)
T PRK11197 241 RDFWDGPMVIKGILDPEDARDAVRFGADGIVVSNHGGRQLDGVLSSARALPAIADAVKGDITILADSGIRNGLDVVRMIA 320 (381)
T ss_pred HHhCCCCEEEEecCCHHHHHHHHhCCCCEEEECCCCCCCCCCcccHHHHHHHHHHHhcCCCeEEeeCCcCcHHHHHHHHH
Confidence 999999999999999998 9999999999999999999999999999999988866899999999999999999999
Q ss_pred hCcCEEEecHHHHHHhhhcCHHHHHHHHHHHHHHHHHHHHHcCCCChhhhcccceee
Q 017781 297 LGASGIFIGRPVVYSLAAEGEKGVRRVLEMLREEFELAMALSGCRSLKEITRDHIVT 353 (366)
Q Consensus 297 lGAd~V~igr~~l~~l~~~G~~gv~~~~~~l~~el~~~m~~~G~~~l~el~~~~l~~ 353 (366)
+||++|++||||+|+++..|++||.++++.|++||+.+|.++|+++++||++..+..
T Consensus 321 LGA~~V~iGr~~l~~la~~G~~gv~~~l~~l~~El~~~m~l~G~~~i~el~~~~l~~ 377 (381)
T PRK11197 321 LGADTVLLGRAFVYALAAAGQAGVANLLDLIEKEMRVAMTLTGAKSISEITRDSLVQ 377 (381)
T ss_pred cCcCceeEhHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHCCCCHHHhCHhhhcc
Confidence 999999999999999999999999999999999999999999999999999887743
|
|
| >TIGR02708 L_lactate_ox L-lactate oxidase | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-79 Score=597.04 Aligned_cols=347 Identities=38% Similarity=0.592 Sum_probs=314.5
Q ss_pred CCCCChHHHHHHHHHhCCccchhhhcCCccchhhHHHhHhcccceeeeccccCCCCCCccceeEcCcccCCceEeccccc
Q 017781 2 GEITNVMEYEAIAKEKLPKMVFDYYASGAEDQWTLQENRNAFSRILFRPRILIDVSKIDMNTTVLGFKISMPIMIAPTAM 81 (366)
Q Consensus 2 ~~~~~~~d~~~~A~~~l~~~~~~y~~~ga~~~~t~~~N~~~f~~i~l~pr~l~~~~~vd~st~l~g~~l~~Pi~iApm~~ 81 (366)
.+++|++|||+.||++||+.+|+|++||++||.|+++|+++|++|.|+||+|++++++||+|++||+++++||++|||++
T Consensus 11 ~~~~~i~D~~~~A~~~lp~~~~~y~~~ga~de~t~~~N~~af~~~~l~PR~L~dv~~~d~~t~llG~~~~~Pv~iaP~g~ 90 (367)
T TIGR02708 11 VDFINTYDLEEMAQQVIPKGAFGYIASGAGDTFTLRENIRAFNHKLIVPHLLQDVENPSTEIEFLGHKLKSPFIMAPVAA 90 (367)
T ss_pred cCCCCHHHHHHHHHHhCCHHHHHHHhcCCchHHHHHHHHHHHHhcCeecccccCCCCCCCceeeCCcccccccccCcHHH
Confidence 35789999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccccCChhhHHHHHHHHHcCCceecCCCCCCCHHHHhccC-CCceEEEeeecCCHHHHHHHHHHHHHcCCCEEEEecCCC
Q 017781 82 QKMAHPEGEYATARAASAAGTIMTLSSWSTSSVEEVASTG-PGIRFFQLYVYKDRNVVAQLVRRAERAGFKAIALTVDTP 160 (366)
Q Consensus 82 ~~l~~~~~e~~la~aa~~~G~~~~vs~~~~~~~e~i~~~~-~~~~~~Qly~~~d~~~~~~~l~ra~~~G~~ai~vtvd~p 160 (366)
+++.||++|.++|++|+++|++|++|+.+++++|||++.. +++.|||||+.+|++.+.++++||+++|+++|++|+|+|
T Consensus 91 ~~l~~p~gE~~~ArAA~~~g~~~~lSt~ss~slEev~~~~~~~~~wfQlY~~~dr~~~~~li~RA~~aG~~alvlTvD~p 170 (367)
T TIGR02708 91 HKLANEQGEVATARGVSEFGSIYTTSSYSTADLPEISEALNGTPHWFQFYMSKDDGINRDIMDRVKADGAKAIVLTADAT 170 (367)
T ss_pred hhccCCcHHHHHHHHHHHcCCCeeecccccCCHHHHHhhcCCCceEEEEeccCCHHHHHHHHHHHHHcCCCEEEEecCCC
Confidence 9999999999999999999999999999999999999874 478999999999999999999999999999999999999
Q ss_pred CCcchhHHHhhhcCCCCccccccccccccCCCccccchhhHHHhhhccCCCCCHHHHHHHHHhcCCCEEEEeccCHHH--
Q 017781 161 RLGRREADIKNRFTLPPFLTLKNFQGLDLGKMDEANDSGLAAYVAGQIDRSLSWKDVKWLQTITKLPILVKGVLTAED-- 238 (366)
Q Consensus 161 ~~g~r~~d~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~i~~lr~~~~~pv~vK~v~~~~d-- 238 (366)
+.|+|++|++++|.+|......+ ..+. . ..... ........++.++|++|+|+++.+++||++|++.+.+|
T Consensus 171 ~~g~R~~d~r~~~~~p~~~~~~~-~~~~-~----~~~~~-~~~~~~~~~~~~~w~~i~~l~~~~~~PvivKGv~~~eda~ 243 (367)
T TIGR02708 171 VGGNREVDVRNGFVFPVGMPIVQ-EYLP-T----GAGKS-MDNVYKSAKQKLSPRDIEEIAGYSGLPVYVKGPQCPEDAD 243 (367)
T ss_pred CCCcchhhhhcCCCCCCccchhh-hhcc-c----CCccc-hhhhccccCCCCCHHHHHHHHHhcCCCEEEeCCCCHHHHH
Confidence 99999999999998885332111 0000 0 00000 00111123577899999999999999999999999988
Q ss_pred --HHcCCcEEEEcCCCccCCCCCcchHHHHHHHHHHcCCCceEEEecCCCCHHHHHHHHHhCcCEEEecHHHHHHhhhcC
Q 017781 239 --VQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFIGRPVVYSLAAEG 316 (366)
Q Consensus 239 --~~aGad~I~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~i~vi~~GGI~~~~dv~kalalGAd~V~igr~~l~~l~~~G 316 (366)
.++|+|+|+||||||||++.++++++.|+++++++++++|||+||||+++.|++|||++|||+|+|||||||+++.+|
T Consensus 244 ~a~~~Gvd~I~VS~HGGrq~~~~~a~~~~L~ei~~av~~~i~vi~dGGIr~g~Dv~KaLalGAd~V~igR~~l~~la~~G 323 (367)
T TIGR02708 244 RALKAGASGIWVTNHGGRQLDGGPAAFDSLQEVAEAVDKRVPIVFDSGVRRGQHVFKALASGADLVALGRPVIYGLALGG 323 (367)
T ss_pred HHHHcCcCEEEECCcCccCCCCCCcHHHHHHHHHHHhCCCCcEEeeCCcCCHHHHHHHHHcCCCEEEEcHHHHHHHHhcC
Confidence 999999999999999999999999999999999887789999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHcCCCChhhhcccceeecc
Q 017781 317 EKGVRRVLEMLREEFELAMALSGCRSLKEITRDHIVTEW 355 (366)
Q Consensus 317 ~~gv~~~~~~l~~el~~~m~~~G~~~l~el~~~~l~~~~ 355 (366)
++||.++++.|++||+.+|.++|+++++||++..+...+
T Consensus 324 ~~gv~~~l~~l~~El~~~M~l~G~~~i~eL~~~~l~~~~ 362 (367)
T TIGR02708 324 SQGARQVFEYLNKELKRVMQLTGTQTIEDVKGFDLRHNP 362 (367)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhCCCCHHHhCccccccCC
Confidence 999999999999999999999999999999998885443
|
Members of this protein oxidize L-lactate to pyruvate, reducing molecular oxygen to hydrogen peroxide. The enzyme is known in Aerococcus viridans, Streptococcus iniae, and some strains of Streptococcus pyogenes where it appears to contribute to virulence. |
| >cd04736 MDH_FMN Mandelate dehydrogenase (MDH)-like FMN-binding domain | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-79 Score=596.78 Aligned_cols=338 Identities=44% Similarity=0.713 Sum_probs=309.3
Q ss_pred HHHHHHHHHhCCccchhhhcCCccchhhHHHhHhcccceeeeccccCCCCCCccceeEcCcccCCceEecccccccccCC
Q 017781 8 MEYEAIAKEKLPKMVFDYYASGAEDQWTLQENRNAFSRILFRPRILIDVSKIDMNTTVLGFKISMPIMIAPTAMQKMAHP 87 (366)
Q Consensus 8 ~d~~~~A~~~l~~~~~~y~~~ga~~~~t~~~N~~~f~~i~l~pr~l~~~~~vd~st~l~g~~l~~Pi~iApm~~~~l~~~ 87 (366)
+|||+.||++||+.+|+|++||++||.|+++|+++|++|.|+||+|++++++||+|++||+++++||++||+|+++++||
T Consensus 1 ~D~~~~Ar~~lp~~~~~Y~~~ga~de~t~~~N~~af~~~~l~PRvLr~v~~~d~~ttllG~~~~~P~~iaP~g~~~l~hp 80 (361)
T cd04736 1 EDYRSLAKKRLPRMVFDYLEGGAEDEKGLRHNRDAFDRWRFIPRRLVDVSKRDISASLFGKVWSAPLVIAPTGLNGAFWP 80 (361)
T ss_pred ChHHHHHHHhCCHHHHHHHccCcchHHHHHHHHHHHHHcCccccccCCCCCCCCceeECCccccccccccHHHHHhccCC
Confidence 48999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhHHHHHHHHHcCCceecCCCCCCCHHHHhccCCCceEEEeeecCCHHHHHHHHHHHHHcCCCEEEEecCCCCCcchhH
Q 017781 88 EGEYATARAASAAGTIMTLSSWSTSSVEEVASTGPGIRFFQLYVYKDRNVVAQLVRRAERAGFKAIALTVDTPRLGRREA 167 (366)
Q Consensus 88 ~~e~~la~aa~~~G~~~~vs~~~~~~~e~i~~~~~~~~~~Qly~~~d~~~~~~~l~ra~~~G~~ai~vtvd~p~~g~r~~ 167 (366)
++|.++|++|++.|++|++|+++++++|||+++.+++.|||||+. +++.++++++||+++||++|+||+|+|+.|+|++
T Consensus 81 ~gE~a~AraA~~~g~~~~lSt~ss~siEeva~a~~~~~wfQLY~~-~r~~~~~ll~RA~~aG~~alvlTvD~pv~g~R~~ 159 (361)
T cd04736 81 NGDLALARAAAKAGIPFVLSTASNMSIEDVARQADGDLWFQLYVV-HRELAELLVKRALAAGYTTLVLTTDVAVNGYRER 159 (361)
T ss_pred cHHHHHHHHHHHcCCcEEeeCCCCCCHHHHHhhcCCCeEEEEEec-CHHHHHHHHHHHHHcCCCEEEEecCCCCCCCchh
Confidence 999999999999999999999999999999988777899999996 6999999999999999999999999999999999
Q ss_pred HHhhhcCCCCccccccccccccC----------------CCccc---cchhhHHHhhhccCCCCCHHHHHHHHHhcCCCE
Q 017781 168 DIKNRFTLPPFLTLKNFQGLDLG----------------KMDEA---NDSGLAAYVAGQIDRSLSWKDVKWLQTITKLPI 228 (366)
Q Consensus 168 d~~~~~~~p~~~~~~~~~~~~~~----------------~~~~~---~~~~~~~~~~~~~d~~~~~~~i~~lr~~~~~pv 228 (366)
|++++|.+|.++..+++.+.... +.... ...+...+...+.|+.++|+.|+|||+.|+.|+
T Consensus 160 d~r~~~~~p~~~~~~~~~~~~~~p~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~w~~i~~ir~~~~~pv 239 (361)
T cd04736 160 DLRNGFAIPFRYTPRVLLDGILHPRWLLRFLRNGMPQLANFASDDAIDVEVQAALMSRQMDASFNWQDLRWLRDLWPHKL 239 (361)
T ss_pred hhhcCCCCCcccchhhhhhhccCchhhhhhcccccccccccccccccchhhHHHHHHhccCCcCCHHHHHHHHHhCCCCE
Confidence 99999998877666553321100 00000 011123344446788999999999999999999
Q ss_pred EEEeccCHHH----HHcCCcEEEEcCCCccCCCCCcchHHHHHHHHHHcCCCceEEEecCCCCHHHHHHHHHhCcCEEEe
Q 017781 229 LVKGVLTAED----VQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFI 304 (366)
Q Consensus 229 ~vK~v~~~~d----~~aGad~I~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~i~vi~~GGI~~~~dv~kalalGAd~V~i 304 (366)
++|++.+.+| .++|+|+|+||||||+|++..++++++|+++++++ ++|||+||||+++.||+|||++||++|++
T Consensus 240 iiKgV~~~eda~~a~~~G~d~I~VSnhGGrqld~~~~~~~~L~ei~~~~--~~~vi~dGGIr~g~Dv~KALaLGA~aV~i 317 (361)
T cd04736 240 LVKGIVTAEDAKRCIELGADGVILSNHGGRQLDDAIAPIEALAEIVAAT--YKPVLIDSGIRRGSDIVKALALGANAVLL 317 (361)
T ss_pred EEecCCCHHHHHHHHHCCcCEEEECCCCcCCCcCCccHHHHHHHHHHHh--CCeEEEeCCCCCHHHHHHHHHcCCCEEEE
Confidence 9999999998 99999999999999999999999999999999988 59999999999999999999999999999
Q ss_pred cHHHHHHhhhcCHHHHHHHHHHHHHHHHHHHHHcCCCChhhhcc
Q 017781 305 GRPVVYSLAAEGEKGVRRVLEMLREEFELAMALSGCRSLKEITR 348 (366)
Q Consensus 305 gr~~l~~l~~~G~~gv~~~~~~l~~el~~~m~~~G~~~l~el~~ 348 (366)
||||||+++..|++||+++++.|++||+.+|.++|+++++||++
T Consensus 318 Gr~~l~~la~~G~~gv~~~l~~l~~el~~~m~l~G~~~i~~l~~ 361 (361)
T cd04736 318 GRATLYGLAARGEAGVSEVLRLLKEEIDRTLALIGCPDIASLTP 361 (361)
T ss_pred CHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHhCCCCHHHcCc
Confidence 99999999999999999999999999999999999999999863
|
MDH is part of a widespread family of homologous FMN-dependent a-hydroxy acid oxidizing enzymes that oxidizes (S)-mandelate to phenylglyoxalate. MDH is an enzyme in the mandelate pathway that occurs in several strains of Pseudomonas which converts (R)-mandelate to benzoate. This family occurs in both prokaryotes and eukaryotes. Members of this family include flavocytochrome b2 (FCB2), glycolate oxidase (GOX), lactate monooxygenase (LMO), mandelate dehydrogenase (MDH), and long chain hydroxyacid oxidase (LCHAO). |
| >cd03332 LMO_FMN L-Lactate 2-monooxygenase (LMO) FMN-binding domain | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-78 Score=594.64 Aligned_cols=347 Identities=41% Similarity=0.669 Sum_probs=311.3
Q ss_pred CCChHHHHHHHHHhCCccchhhhcCCccchhhHHHhHhcccceeeeccccCCCCCCccceeEcCcccCCceEeccccccc
Q 017781 4 ITNVMEYEAIAKEKLPKMVFDYYASGAEDQWTLQENRNAFSRILFRPRILIDVSKIDMNTTVLGFKISMPIMIAPTAMQK 83 (366)
Q Consensus 4 ~~~~~d~~~~A~~~l~~~~~~y~~~ga~~~~t~~~N~~~f~~i~l~pr~l~~~~~vd~st~l~g~~l~~Pi~iApm~~~~ 83 (366)
++|++|||+.||++||+.+|+|++||++||.|+++|+++|++|.|+||+|+|++++||+|+|||+++++||++||+++++
T Consensus 18 ~~~i~D~~~~Ar~~lp~~~~~y~~gGa~de~t~~~N~~af~~~~l~PRvL~dv~~~dt~t~llG~~~~~P~~iAP~g~~~ 97 (383)
T cd03332 18 PVDPERLEALAREALSPGAFAYVAGGAGSESTARANRDAFSRWRIVPRMLRGVTERDLSVELFGRTLAAPLLLAPIGVQE 97 (383)
T ss_pred cCCHHHHHHHHHHhCCHHHHHHhccCcchHHHHHHHHHHHHhcCccccccccCCCCCCceeeCCccccccceechHHHHH
Confidence 68999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccCChhhHHHHHHHHHcCCceecCCCCCCCHHHHhccCC-CceEEEeeecCCHHHHHHHHHHHHHcCCCEEEEecCCCCC
Q 017781 84 MAHPEGEYATARAASAAGTIMTLSSWSTSSVEEVASTGP-GIRFFQLYVYKDRNVVAQLVRRAERAGFKAIALTVDTPRL 162 (366)
Q Consensus 84 l~~~~~e~~la~aa~~~G~~~~vs~~~~~~~e~i~~~~~-~~~~~Qly~~~d~~~~~~~l~ra~~~G~~ai~vtvd~p~~ 162 (366)
+.||++|.++|++|+++|++|++|+++++++|||++..+ ++.|||||+++|++.+.++++||+++||++|++|||+|+.
T Consensus 98 l~~p~gE~a~ArAA~~~gi~~~lSt~ss~slEeIa~~~~~~~~wfQlY~~~dr~~~~~ll~RA~~aG~~alvlTVD~pv~ 177 (383)
T cd03332 98 LFHPDAELATARAAAELGVPYILSTASSSSIEDVAAAAGDAPRWFQLYWPKDDDLTESLLRRAEKAGYRVLVVTLDTWSL 177 (383)
T ss_pred hcCCcHHHHHHHHHHHcCCCeeecCCCCCCHHHHHhhcCCCCcEEEeeCCCCHHHHHHHHHHHHHcCCCEEEEeCCCCCC
Confidence 999999999999999999999999999999999998744 6899999999999999999999999999999999999999
Q ss_pred cchhHHHhhhcCCCCc--ccccccc-------ccccCCC-ccc----cchhhHHHhhhccCCCCCHHHHHHHHHhcCCCE
Q 017781 163 GRREADIKNRFTLPPF--LTLKNFQ-------GLDLGKM-DEA----NDSGLAAYVAGQIDRSLSWKDVKWLQTITKLPI 228 (366)
Q Consensus 163 g~r~~d~~~~~~~p~~--~~~~~~~-------~~~~~~~-~~~----~~~~~~~~~~~~~d~~~~~~~i~~lr~~~~~pv 228 (366)
|+|++|++++| .|.. ....++. .+..... ... .......+.....++.++|+.|+|+|+.|++||
T Consensus 178 g~Rerd~r~~~-~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~tW~~i~~lr~~~~~pv 256 (383)
T cd03332 178 GWRPRDLDLGY-LPFLRGIGIANYFSDPVFRKKLAEPVGEDPEAPPPMEAAVARFVSVFSGPSLTWEDLAFLREWTDLPI 256 (383)
T ss_pred CCchhhhhcCC-CCCccccchhhhhccchhhhccccCCCCCcccccccchhHHHHHHhcCCCCCCHHHHHHHHHhcCCCE
Confidence 99999999998 3431 1211110 0000000 000 001122233333578899999999999999999
Q ss_pred EEEeccCHHH----HHcCCcEEEEcCCCccCCCCCcchHHHHHHHHHHcCCCceEEEecCCCCHHHHHHHHHhCcCEEEe
Q 017781 229 LVKGVLTAED----VQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFI 304 (366)
Q Consensus 229 ~vK~v~~~~d----~~aGad~I~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~i~vi~~GGI~~~~dv~kalalGAd~V~i 304 (366)
++|++.+.+| .++|+|+|+|||||||+++++++++++|+++++++++++|||+|||||+|.|++|||++|||+|++
T Consensus 257 ivKgV~~~~dA~~a~~~G~d~I~vsnhGGr~~d~~~~t~~~L~ei~~~~~~~~~vi~dGGIr~G~Dv~KALaLGA~~v~i 336 (383)
T cd03332 257 VLKGILHPDDARRAVEAGVDGVVVSNHGGRQVDGSIAALDALPEIVEAVGDRLTVLFDSGVRTGADIMKALALGAKAVLI 336 (383)
T ss_pred EEecCCCHHHHHHHHHCCCCEEEEcCCCCcCCCCCcCHHHHHHHHHHHhcCCCeEEEeCCcCcHHHHHHHHHcCCCEEEE
Confidence 9999999998 999999999999999999999999999999999987789999999999999999999999999999
Q ss_pred cHHHHHHhhhcCHHHHHHHHHHHHHHHHHHHHHcCCCChhhhcccce
Q 017781 305 GRPVVYSLAAEGEKGVRRVLEMLREEFELAMALSGCRSLKEITRDHI 351 (366)
Q Consensus 305 gr~~l~~l~~~G~~gv~~~~~~l~~el~~~m~~~G~~~l~el~~~~l 351 (366)
||||+|+++..|++||+++++.+++||+.+|.++|+++++||+++.+
T Consensus 337 Gr~~l~~l~~~G~~gv~~~l~~l~~El~~~m~l~G~~~i~~l~~~~~ 383 (383)
T cd03332 337 GRPYAYGLALGGEDGVEHVLRNLLAELDLTMGLAGIRSIAELTRDAL 383 (383)
T ss_pred cHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHCCCCHHHhCcccC
Confidence 99999999999999999999999999999999999999999988653
|
LMO is a FMN-containing enzyme that catalyzes the conversion of L-lactate and oxygen to acetate, carbon dioxide, and water. LMO is a member of the family of alpha-hydroxy acid oxidases. It is thought to be a homooctamer with two- and four- fold axes in the center of the octamer. |
| >cd04737 LOX_like_FMN L-Lactate oxidase (LOX) FMN-binding domain | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.6e-78 Score=583.73 Aligned_cols=343 Identities=42% Similarity=0.702 Sum_probs=312.3
Q ss_pred CCCChHHHHHHHHHhCCccchhhhcCCccchhhHHHhHhcccceeeeccccCCCCCCccceeEcCcccCCceEecccccc
Q 017781 3 EITNVMEYEAIAKEKLPKMVFDYYASGAEDQWTLQENRNAFSRILFRPRILIDVSKIDMNTTVLGFKISMPIMIAPTAMQ 82 (366)
Q Consensus 3 ~~~~~~d~~~~A~~~l~~~~~~y~~~ga~~~~t~~~N~~~f~~i~l~pr~l~~~~~vd~st~l~g~~l~~Pi~iApm~~~ 82 (366)
.++|++|||+.||++||+++|+|++||++||.|+++|+++|++|.|+||+|+|++++||+|++||+++++||++|||+++
T Consensus 4 ~~~~i~d~~~~A~~~lp~~~~~y~~~ga~~e~t~~~N~~a~~~~~l~prvL~dv~~~d~~t~~lG~~~~~P~~iaP~g~~ 83 (351)
T cd04737 4 DIINLYDLEAEAKKVIPKGAFGYIAGGSEDEWTLRENTRAFNHKQIVPRVLQGVESPDTSTELLGIKLKTPIIMAPIAAH 83 (351)
T ss_pred ccCcHHHHHHHHHHhCCHHHHHHHhcCcchHHHHHHHHHHHHhcCeechhccCCCCCCCceEeCCccccchhhhHHHHHH
Confidence 46899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccCChhhHHHHHHHHHcCCceecCCCCCCCHHHHhccC-CCceEEEeeecCCHHHHHHHHHHHHHcCCCEEEEecCCCC
Q 017781 83 KMAHPEGEYATARAASAAGTIMTLSSWSTSSVEEVASTG-PGIRFFQLYVYKDRNVVAQLVRRAERAGFKAIALTVDTPR 161 (366)
Q Consensus 83 ~l~~~~~e~~la~aa~~~G~~~~vs~~~~~~~e~i~~~~-~~~~~~Qly~~~d~~~~~~~l~ra~~~G~~ai~vtvd~p~ 161 (366)
.+.||++|.++|++|+++|+++++|+.+++++|||.+.. +++.|||||+++|++.+.++++||+++|+++|++|+|+|+
T Consensus 84 ~l~~p~ge~a~AraA~~~gi~~~lSt~s~~s~Eei~~~~~~~~~wfQlY~~~d~~~~~~ll~rA~~aG~~alvlTvD~p~ 163 (351)
T cd04737 84 GLAHATGEVATARGMAEVGSLFSISTYSNTSLEEIAKASNGGPKWFQLYMSKDDGFNRSLLDRAKAAGAKAIILTADATV 163 (351)
T ss_pred HhcCCchHHHHHHHHHHcCCCEEecCCCCCCHHHHHHhcCCCCeEEEEeecCCHHHHHHHHHHHHHcCCCEEEEecCCCC
Confidence 999999999999999999999999999999999999876 4789999999999999999999999999999999999999
Q ss_pred CcchhHHHhhhcCCCCccccccccccccCCCccccchhhHHHhhhccCCCCCHHHHHHHHHhcCCCEEEEeccCHHH---
Q 017781 162 LGRREADIKNRFTLPPFLTLKNFQGLDLGKMDEANDSGLAAYVAGQIDRSLSWKDVKWLQTITKLPILVKGVLTAED--- 238 (366)
Q Consensus 162 ~g~r~~d~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~i~~lr~~~~~pv~vK~v~~~~d--- 238 (366)
.|+|++|++++|.+|.+....+...... ....... ......++.++|++++|+|+.+++||++|++.++++
T Consensus 164 ~g~R~~d~r~~~~~p~~~~~~~~~~~~~-----~~~~~~~-~~~~~~~~~~~~~~l~~lr~~~~~PvivKgv~~~~dA~~ 237 (351)
T cd04737 164 GGNREADIRNKFQFPFGMPNLNHFSEGT-----GKGKGIS-EIYAAAKQKLSPADIEFIAKISGLPVIVKGIQSPEDADV 237 (351)
T ss_pred CCcchHHHHhcCCCCcccchhhhhcccc-----ccCcchh-hhhhhccCCCCHHHHHHHHHHhCCcEEEecCCCHHHHHH
Confidence 9999999999998886443322111000 0000000 111224567899999999999999999999999988
Q ss_pred -HHcCCcEEEEcCCCccCCCCCcchHHHHHHHHHHcCCCceEEEecCCCCHHHHHHHHHhCcCEEEecHHHHHHhhhcCH
Q 017781 239 -VQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFIGRPVVYSLAAEGE 317 (366)
Q Consensus 239 -~~aGad~I~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~i~vi~~GGI~~~~dv~kalalGAd~V~igr~~l~~l~~~G~ 317 (366)
.++|+|+|+||||||+++++++++++.|+++++++++++|||++|||+++.|++|+|++|||+|+|||||+|+++..|+
T Consensus 238 a~~~G~d~I~vsnhGGr~ld~~~~~~~~l~~i~~a~~~~i~vi~dGGIr~g~Di~kaLalGA~~V~iGr~~l~~la~~G~ 317 (351)
T cd04737 238 AINAGADGIWVSNHGGRQLDGGPASFDSLPEIAEAVNHRVPIIFDSGVRRGEHVFKALASGADAVAVGRPVLYGLALGGA 317 (351)
T ss_pred HHHcCCCEEEEeCCCCccCCCCchHHHHHHHHHHHhCCCCeEEEECCCCCHHHHHHHHHcCCCEEEECHHHHHHHhhchH
Confidence 9999999999999999999999999999999998877899999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHcCCCChhhhcccce
Q 017781 318 KGVRRVLEMLREEFELAMALSGCRSLKEITRDHI 351 (366)
Q Consensus 318 ~gv~~~~~~l~~el~~~m~~~G~~~l~el~~~~l 351 (366)
+||.++++.+++||+.+|.++|+++++|+++..|
T Consensus 318 ~gv~~~l~~l~~El~~~m~l~G~~~i~el~~~~~ 351 (351)
T cd04737 318 QGVASVLEHLNKELKIVMQLAGTRTIEDVKRTFL 351 (351)
T ss_pred HHHHHHHHHHHHHHHHHHHHHCCCCHHHhCCCCC
Confidence 9999999999999999999999999999987653
|
LOX is a member of the family of FMN-containing alpha-hydroxyacid oxidases and catalyzes the oxidation of l-lactate using molecular oxygen to generate pyruvate and H2O2. This family occurs in both prokaryotes and eukaryotes. Members of this family include flavocytochrome b2 (FCB2), glycolate oxidase (GOX), lactate monooxygenase (LMO), mandelate dehydrogenase (MDH), and long chain hydroxyacid oxidase (LCHAO). |
| >PF01070 FMN_dh: FMN-dependent dehydrogenase; InterPro: IPR000262 A number of oxidoreductases that act on alpha-hydroxy acids and which are FMN-containing flavoproteins have been shown [, , ] to be structurally related | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-76 Score=579.47 Aligned_cols=339 Identities=51% Similarity=0.784 Sum_probs=302.0
Q ss_pred HHHhCCccchhhhcCCccchhhHHHhHhcccceeeeccccCCCCCCccceeEcCcccCCceEecccccccccCChhhHHH
Q 017781 14 AKEKLPKMVFDYYASGAEDQWTLQENRNAFSRILFRPRILIDVSKIDMNTTVLGFKISMPIMIAPTAMQKMAHPEGEYAT 93 (366)
Q Consensus 14 A~~~l~~~~~~y~~~ga~~~~t~~~N~~~f~~i~l~pr~l~~~~~vd~st~l~g~~l~~Pi~iApm~~~~l~~~~~e~~l 93 (366)
||++||+..|+|++||+++|.|+++|+++|++|+|+||+|++++++||+|+|||+++++||++|||+++++.||++|.++
T Consensus 1 Ar~~lp~~~~~yi~gga~~e~t~~~N~~af~~i~l~prvL~dv~~~D~st~~lG~~~s~P~~iaP~~~~~l~~~~ge~~l 80 (356)
T PF01070_consen 1 ARRRLPPRVFDYIDGGAGDEVTFRRNREAFDRIRLRPRVLRDVSDPDTSTTFLGQKLSMPFFIAPMGGGGLAHPDGERAL 80 (356)
T ss_dssp HHHHS-HHHHHHHHHHSTTTHHHHHHHHGGGGEEE---SSSBGSS-BSSEEETTEEESSSEEEEEESTGGGTSTTHHHHH
T ss_pred CccccCHHHHHHHHHcCCCcHHHHHHHHHHHHhcccccccCCcccCCCCeeeCCccCCCCeEEcchhhhhhhccchHHHH
Confidence 89999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHcCCceecCCCCCCCHHHHhccCCCceEEEeeecCCHHHHHHHHHHHHHcCCCEEEEecCCCCCcchhHHHhhhc
Q 017781 94 ARAASAAGTIMTLSSWSTSSVEEVASTGPGIRFFQLYVYKDRNVVAQLVRRAERAGFKAIALTVDTPRLGRREADIKNRF 173 (366)
Q Consensus 94 a~aa~~~G~~~~vs~~~~~~~e~i~~~~~~~~~~Qly~~~d~~~~~~~l~ra~~~G~~ai~vtvd~p~~g~r~~d~~~~~ 173 (366)
|++|+++|+++++|++++.++|++.+..+++.|||||.+.|++.+.++++||+++|+++++||+|+|..++|++|+|++|
T Consensus 81 AraA~~~Gi~~~lss~s~~~~e~ia~~~~~~~~~Qly~~~d~~~~~~~i~rAe~aG~~Al~vtvD~~~~~~R~~d~r~g~ 160 (356)
T PF01070_consen 81 ARAAAKAGIPMMLSSQSSASLEEIAAASGGPLWFQLYPPRDRELTRDLIRRAEAAGAKALVVTVDAPQEGNRERDLRNGF 160 (356)
T ss_dssp HHHHHHHTSEEEEETTCSSCHHHHHHHCTSEEEEEEEGBSSHHHHHHHHHHHHHTTCSEEEEETSHSSHHHBHHHHHHTC
T ss_pred HHHHhccCcceeccCCccCCHHHHHhhccCCeEEEEEEecCHHHHHHHHHHhhcCCCCEEEEECcCcccCCccccccccc
Confidence 99999999999999999999999998877899999999999999999999999999999999999999999999999999
Q ss_pred CCCCccccccccccccCCC-------------ccccchhhHHHhhhccCCCCCHHHHHHHHHhcCCCEEEEeccCHHH--
Q 017781 174 TLPPFLTLKNFQGLDLGKM-------------DEANDSGLAAYVAGQIDRSLSWKDVKWLQTITKLPILVKGVLTAED-- 238 (366)
Q Consensus 174 ~~p~~~~~~~~~~~~~~~~-------------~~~~~~~~~~~~~~~~d~~~~~~~i~~lr~~~~~pv~vK~v~~~~d-- 238 (366)
.+|.+++.+++.+....+. ..........+...+.++.++|+.|+|+++.|++||+||++++.+|
T Consensus 161 ~~p~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~i~~~~~~~~~pvivKgv~~~~da~ 240 (356)
T PF01070_consen 161 SVPPKLSPRNLLDGASHPRSGMPRLENNEAPPPGDNGAAAARFVGSQFDPSLTWDDIEWIRKQWKLPVIVKGVLSPEDAK 240 (356)
T ss_dssp CCSTTHCTTCGTTTTTTT-TTTGG-----CSSSSTSTCHHHHHHHCHB-TT-SHHHHHHHHHHCSSEEEEEEE-SHHHHH
T ss_pred CCCcccccccccccccCcccccccccccccccCCCcchhHHHHHHHhcCCCCCHHHHHHHhcccCCceEEEecccHHHHH
Confidence 9998887776654321111 0112223445666667888999999999999999999999999999
Q ss_pred --HHcCCcEEEEcCCCccCCCCCcchHHHHHHHHHHcCCCceEEEecCCCCHHHHHHHHHhCcCEEEecHHHHHHhhhcC
Q 017781 239 --VQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFIGRPVVYSLAAEG 316 (366)
Q Consensus 239 --~~aGad~I~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~i~vi~~GGI~~~~dv~kalalGAd~V~igr~~l~~l~~~G 316 (366)
.++|+|+|+||||||||+|+++++++.|+++++++++++|||+|||||+|.|++|||+|||++|++||||+|+++..|
T Consensus 241 ~~~~~G~~~i~vs~hGGr~~d~~~~~~~~L~~i~~~~~~~~~i~~dgGir~g~Dv~kalaLGA~~v~igr~~l~~l~~~g 320 (356)
T PF01070_consen 241 RAVDAGVDGIDVSNHGGRQLDWGPPTIDALPEIRAAVGDDIPIIADGGIRRGLDVAKALALGADAVGIGRPFLYALAAGG 320 (356)
T ss_dssp HHHHTT-SEEEEESGTGTSSTTS-BHHHHHHHHHHHHTTSSEEEEESS--SHHHHHHHHHTT-SEEEESHHHHHHHHHHH
T ss_pred HHHhcCCCEEEecCCCcccCccccccccccHHHHhhhcCCeeEEEeCCCCCHHHHHHHHHcCCCeEEEccHHHHHHHHhh
Confidence 999999999999999999999999999999999998899999999999999999999999999999999999998899
Q ss_pred HHHHHHHHHHHHHHHHHHHHHcCCCChhhhccccee
Q 017781 317 EKGVRRVLEMLREEFELAMALSGCRSLKEITRDHIV 352 (366)
Q Consensus 317 ~~gv~~~~~~l~~el~~~m~~~G~~~l~el~~~~l~ 352 (366)
++||+++++.|++||+.+|.++|+++++||+++.|.
T Consensus 321 ~~gv~~~~~~l~~el~~~m~l~G~~~~~~l~~~~~~ 356 (356)
T PF01070_consen 321 EEGVERVLEILKEELKRAMFLLGARSIAELRRSLLR 356 (356)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHT-SBGGGHTGGGEE
T ss_pred HHHHHHHHHHHHHHHHHHHHHHCCCCHHHhCHHhcC
Confidence 999999999999999999999999999999998763
|
These enzymes are: Lactate dehydrogenase (1.1.2.3 from EC), which consists of a dehydrogenase domain and a haem-binding domain called cytochrome b2 and which catalyses the conversion of lactate into pyruvate. Glycolate oxidase (1.1.3.15 from EC) ((S)-2-hydroxy-acid oxidase), a peroxisomal enzyme that catalyses the conversion of glycolate and oxygen to glyoxylate and hydrogen peroxide. Long chain alpha-hydroxy acid oxidase from rat (1.1.3.15 from EC), a peroxisomal enzyme. Lactate 2-monooxygenase (1.13.12.4 from EC) (lactate oxidase) from Mycobacterium smegmatis, which catalyses the conversion of lactate and oxygen to acetate, carbon dioxide and water. (S)-mandelate dehydrogenase from Pseudomonas putida (gene mdlB), which catalyses the reduction of (S)-mandelate to benzoylformate. The first step in the reaction mechanism of these enzymes is the abstraction of the proton from the alpha-carbon of the substrate producing a carbanion which can subsequently attach to the N5 atom of FMN. A conserved histidine has been shown [] to be involved in the removal of the proton. The region around this active site residue is highly conserved and contains an arginine residue which is involved in substrate binding.; GO: 0016491 oxidoreductase activity; PDB: 1VCG_C 1VCF_A 1P0N_B 1P0K_A 2A85_A 2A7P_A 3GIY_A 2A7N_A 3DH7_A 2RDU_A .... |
| >cd02922 FCB2_FMN Flavocytochrome b2 (FCB2) FMN-binding domain | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.5e-74 Score=559.89 Aligned_cols=335 Identities=47% Similarity=0.755 Sum_probs=305.3
Q ss_pred HHHHHHHHHhCCccchhhhcCCccchhhHHHhHhcccceeeeccccCCCCCCccceeEcCcccCCceEecccccccccCC
Q 017781 8 MEYEAIAKEKLPKMVFDYYASGAEDQWTLQENRNAFSRILFRPRILIDVSKIDMNTTVLGFKISMPIMIAPTAMQKMAHP 87 (366)
Q Consensus 8 ~d~~~~A~~~l~~~~~~y~~~ga~~~~t~~~N~~~f~~i~l~pr~l~~~~~vd~st~l~g~~l~~Pi~iApm~~~~l~~~ 87 (366)
+|||+.||++||+.+|+|++||++||+|+++|+++|++|.|+||+|++++++||+|+|||+++++||+||||+++++.||
T Consensus 1 ~d~~~~A~~~lp~~~~~y~~~ga~~e~t~~~N~~af~~~~l~pr~L~dv~~~d~~~~~lG~~~~~Pi~iaP~~~~~~~~~ 80 (344)
T cd02922 1 HDFEAAAKKYLSKKAWAYYSSGADDEITLRENLEAFQRIRFRPRVLRDVEKVDTSTTILGHKVSLPFFISPAALAKLAHP 80 (344)
T ss_pred ChHHHHHHHhCCHHHHHHhccCcchHHHHHHHHHHHHhCceeccccCCCCCCCCceEECCcccCCceeeChHHHhhhCCc
Confidence 48999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhHHHHHHHHHcCCceecCCCCCCCHHHHhcc-CC-CceEEEeeecCCHHHHHHHHHHHHHcCCCEEEEecCCCCCcch
Q 017781 88 EGEYATARAASAAGTIMTLSSWSTSSVEEVAST-GP-GIRFFQLYVYKDRNVVAQLVRRAERAGFKAIALTVDTPRLGRR 165 (366)
Q Consensus 88 ~~e~~la~aa~~~G~~~~vs~~~~~~~e~i~~~-~~-~~~~~Qly~~~d~~~~~~~l~ra~~~G~~ai~vtvd~p~~g~r 165 (366)
++|.++|++|.+.|++|++|+++++++|+|.+. .| .+.|||||.++|++.++++++|++++|+++|++|+|+|+.|+|
T Consensus 81 ~ge~~~AraA~~~gi~~~lss~s~~s~e~v~~~~~~~~~~w~Qly~~~d~~~~~~l~~ra~~ag~~alvltvD~p~~g~r 160 (344)
T cd02922 81 DGELNLARAAGKHGILQMISTNASCSLEEIVDARPPDQPLFFQLYVNKDRTKTEELLKRAEKLGAKAIFLTVDAPVLGKR 160 (344)
T ss_pred hHHHHHHHHHHHcCCCEEecCcccCCHHHHHHhcCCCCcEEEEEeecCCHHHHHHHHHHHHHcCCCEEEEECCCCCcCcc
Confidence 999999999999999999999999999998876 34 6899999999999999999999999999999999999999999
Q ss_pred hHHHhhhcCCCCccccccccccccCCCccccchhhHHHhhhccCCCCCHHHHHHHHHhcCCCEEEEeccCHHH----HHc
Q 017781 166 EADIKNRFTLPPFLTLKNFQGLDLGKMDEANDSGLAAYVAGQIDRSLSWKDVKWLQTITKLPILVKGVLTAED----VQA 241 (366)
Q Consensus 166 ~~d~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~i~~lr~~~~~pv~vK~v~~~~d----~~a 241 (366)
++|++++|..|.++..++.... ....+...+.....++..+|+.++|+|+.+++||++|++.+.++ .++
T Consensus 161 ~~d~r~~~~~p~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~PvivKgv~~~~dA~~a~~~ 233 (344)
T cd02922 161 ERDERLKAEEAVSDGPAGKKTK-------AKGGGAGRAMSGFIDPTLTWDDIKWLRKHTKLPIVLKGVQTVEDAVLAAEY 233 (344)
T ss_pred hhhhhhcCCcCccccccccccc-------cccchHHHHHhhccCCCCCHHHHHHHHHhcCCcEEEEcCCCHHHHHHHHHc
Confidence 9999999988865544331100 01111222333345677899999999999999999999999888 999
Q ss_pred CCcEEEEcCCCccCCCCCcchHHHHHHHHHH---cCCCceEEEecCCCCHHHHHHHHHhCcCEEEecHHHHHHhhhcCHH
Q 017781 242 GAAGIIVSNHGARQLDYVPATIMALEEVVKA---TQGRIPVFLDGGVRRGTDVFKALALGASGIFIGRPVVYSLAAEGEK 318 (366)
Q Consensus 242 Gad~I~vs~~gg~~~~~~~~~~~~l~~i~~~---~~~~i~vi~~GGI~~~~dv~kalalGAd~V~igr~~l~~l~~~G~~ 318 (366)
|+|+|+||||||++++..++++++|+++++. +++++|||++|||+++.|++|+|++||++|+|||||++++.+.|++
T Consensus 234 G~d~I~vsnhgG~~~d~~~~~~~~L~~i~~~~~~~~~~~~vi~~GGIr~G~Dv~kalaLGA~aV~iG~~~l~~l~~~G~~ 313 (344)
T cd02922 234 GVDGIVLSNHGGRQLDTAPAPIEVLLEIRKHCPEVFDKIEVYVDGGVRRGTDVLKALCLGAKAVGLGRPFLYALSAYGEE 313 (344)
T ss_pred CCCEEEEECCCcccCCCCCCHHHHHHHHHHHHHHhCCCceEEEeCCCCCHHHHHHHHHcCCCEEEECHHHHHHHhhccHH
Confidence 9999999999999999989999999999885 3457999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHcCCCChhhhccc
Q 017781 319 GVRRVLEMLREEFELAMALSGCRSLKEITRD 349 (366)
Q Consensus 319 gv~~~~~~l~~el~~~m~~~G~~~l~el~~~ 349 (366)
||+++++.+++||+.+|.++|+++++||+++
T Consensus 314 gv~~~l~~l~~EL~~~m~l~G~~~i~~l~~~ 344 (344)
T cd02922 314 GVEKAIQILKDEIETTMRLLGVTSLDQLGPS 344 (344)
T ss_pred HHHHHHHHHHHHHHHHHHHhCCCCHHHhCcC
Confidence 9999999999999999999999999999753
|
FCB2 (AKA L-lactate:cytochrome c oxidoreductase) is a respiratory enzyme located in the intermembrane space of fungal mitochondria which catalyzes the oxidation of L-lactate to pyruvate. FCB2 also participates in a short electron-transport chain involving cytochrome c and cytochrome oxidase which ultimately directs the reducing equivalents gained from L-lactate oxidation to oxygen, yielding one molecule of ATP for every L-lactate molecule consumed. FCB2 is composed of 2 domains: a C-terminal flavin-binding domain, which includes the active site for lacate oxidation, and an N-terminal b2-cytochrome domain, required for efficient cytochrome c reduction. FCB2 is a homotetramer and contains two noncovalently bound cofactors, FMN and heme per subunit. |
| >PLN02979 glycolate oxidase | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-69 Score=523.33 Aligned_cols=317 Identities=90% Similarity=1.329 Sum_probs=286.3
Q ss_pred ceeeeccccCCCCCCccceeEcCcccCCceEecccccccccCChhhHHHHHHHHHcCCceecCCCCCCCHHHHhccCCCc
Q 017781 45 RILFRPRILIDVSKIDMNTTVLGFKISMPIMIAPTAMQKMAHPEGEYATARAASAAGTIMTLSSWSTSSVEEVASTGPGI 124 (366)
Q Consensus 45 ~i~l~pr~l~~~~~vd~st~l~g~~l~~Pi~iApm~~~~l~~~~~e~~la~aa~~~G~~~~vs~~~~~~~e~i~~~~~~~ 124 (366)
-|.|+||+|+|++++||+|++||+++++||++||+|++++.||++|.++|++|+++|+++++|+.++.++|||++..+++
T Consensus 43 ~~~lrPRvLrdv~~~dtst~llG~~~~~P~~iAP~g~~~l~hpdgE~a~ARAA~~agi~~~lSt~ss~slEeIa~a~~~~ 122 (366)
T PLN02979 43 FCDFRPRILIDVSKIDMTTTVLGFKISMPIMVAPTAMQKMAHPDGEYATARAASAAGTIMTLSSWATSSVEEVASTGPGI 122 (366)
T ss_pred eeEEECccccCCCCCCCceEECCcccCccceecHHHHHhhCCCChHHHHHHHHHHcCCCeeeccCcCCCHHHHHhccCCC
Confidence 48999999999999999999999999999999999999999999999999999999999999999999999999876678
Q ss_pred eEEEeeecCCHHHHHHHHHHHHHcCCCEEEEecCCCCCcchhHHHhhhcCCCCccccccccccccCCCccccchhhHHHh
Q 017781 125 RFFQLYVYKDRNVVAQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLTLKNFQGLDLGKMDEANDSGLAAYV 204 (366)
Q Consensus 125 ~~~Qly~~~d~~~~~~~l~ra~~~G~~ai~vtvd~p~~g~r~~d~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 204 (366)
.|||||+++|++.+.++++||+++||+++++|+|+|+.|+|++|++|+|.+|...+++++..............+...+.
T Consensus 123 ~wfQLY~~~Dr~~~~~ll~RA~~aG~~AlvlTVD~pv~G~R~rd~rn~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 202 (366)
T PLN02979 123 RFFQLYVYKNRNVVEQLVRRAERAGFKAIALTVDTPRLGRRESDIKNRFTLPPNLTLKNFEGLDLGKMDEANDSGLASYV 202 (366)
T ss_pred eEEEEeecCCHHHHHHHHHHHHHcCCCEEEEEecCCCCCCchhhhccCCCCCcccchhhhhhccccCCCcccchhHHHHH
Confidence 99999999999999999999999999999999999999999999999999887666555432211000101122234455
Q ss_pred hhccCCCCCHHHHHHHHHhcCCCEEEEeccCHHH----HHcCCcEEEEcCCCccCCCCCcchHHHHHHHHHHcCCCceEE
Q 017781 205 AGQIDRSLSWKDVKWLQTITKLPILVKGVLTAED----VQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVF 280 (366)
Q Consensus 205 ~~~~d~~~~~~~i~~lr~~~~~pv~vK~v~~~~d----~~aGad~I~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~i~vi 280 (366)
..+.++.++|++|+|+|+.|++||++|++.+.+| .++|+|+|+||||||+|+|+.++++++|+++++++.+++|||
T Consensus 203 ~~~~~~~ltW~dl~wlr~~~~~PvivKgV~~~~dA~~a~~~Gvd~I~VsnhGGrqld~~p~t~~~L~ei~~~~~~~~~Vi 282 (366)
T PLN02979 203 AGQIDRTLSWKDVQWLQTITKLPILVKGVLTGEDARIAIQAGAAGIIVSNHGARQLDYVPATISALEEVVKATQGRIPVF 282 (366)
T ss_pred hhcCCCCCCHHHHHHHHhccCCCEEeecCCCHHHHHHHHhcCCCEEEECCCCcCCCCCchhHHHHHHHHHHHhCCCCeEE
Confidence 5567888999999999999999999999999998 999999999999999999999999999999999887789999
Q ss_pred EecCCCCHHHHHHHHHhCcCEEEecHHHHHHhhhcCHHHHHHHHHHHHHHHHHHHHHcCCCChhhhcccceeeccCCCCC
Q 017781 281 LDGGVRRGTDVFKALALGASGIFIGRPVVYSLAAEGEKGVRRVLEMLREEFELAMALSGCRSLKEITRDHIVTEWDASLP 360 (366)
Q Consensus 281 ~~GGI~~~~dv~kalalGAd~V~igr~~l~~l~~~G~~gv~~~~~~l~~el~~~m~~~G~~~l~el~~~~l~~~~~~~~~ 360 (366)
+|||||+|.|++|||++|||+|++||||+|+++..|++||.++++.+++||+.+|.++|+++++|+++..+......++|
T Consensus 283 ~dGGIr~G~Di~KALALGAdaV~iGrp~L~~la~~G~~Gv~~~l~~l~~El~~~m~l~G~~~i~el~~~~~~~~~~~~~~ 362 (366)
T PLN02979 283 LDGGVRRGTDVFKALALGASGIFIGRPVVFSLAAEGEAGVRKVLQMLRDEFELTMALSGCRSLKEISRNHITTEWDTPRP 362 (366)
T ss_pred EeCCcCcHHHHHHHHHcCCCEEEEcHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHhCCCCHHHhChhhhhHHHhcccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999988776655554
Q ss_pred C
Q 017781 361 R 361 (366)
Q Consensus 361 ~ 361 (366)
.
T Consensus 363 ~ 363 (366)
T PLN02979 363 S 363 (366)
T ss_pred c
Confidence 3
|
|
| >COG1304 idi Isopentenyl diphosphate isomerase (BS_ypgA, MTH48 and related proteins) [Coenzyme transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.7e-65 Score=492.72 Aligned_cols=345 Identities=44% Similarity=0.640 Sum_probs=315.4
Q ss_pred hHHHHHHHHHhCCccchhhhcCCccchhhHHHhHhcccceeeeccccCCCCCCccceeEcCcccCCceEecccccccccC
Q 017781 7 VMEYEAIAKEKLPKMVFDYYASGAEDQWTLQENRNAFSRILFRPRILIDVSKIDMNTTVLGFKISMPIMIAPTAMQKMAH 86 (366)
Q Consensus 7 ~~d~~~~A~~~l~~~~~~y~~~ga~~~~t~~~N~~~f~~i~l~pr~l~~~~~vd~st~l~g~~l~~Pi~iApm~~~~l~~ 86 (366)
+.|+++.|++++| +.|+|+.+|+++|.|+++|+++|++|.|+|++|++++++||+|+++|+++++||+||||+++++.|
T Consensus 1 ~~~~~~~a~~~~~-~~~hy~~~~~~~e~t~~~n~~~f~~i~l~~~~L~~v~~idlst~~~G~~l~~Pi~iapmt~g~~~~ 79 (360)
T COG1304 1 VADLRRAAQRRLP-KAFHYIDGGAEDEVTLRRNREAFEDIALRPRVLPEVDDIDLSTTFLGQKLSAPIIIAPMTGGGLAH 79 (360)
T ss_pred CcchHHHHhhhcc-hHhHHHHhhccccccHhhhhhhhhhheeecccCCCcccCccceEecCccccCCEEEeccccccccC
Confidence 3689999999999 999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ChhhHHHHHHHHHcCCceecCCCCCCCHHHHhccCCCceEEEeeecCCHHHHHHHHHHHHHcCCCEEEEecCCCCCcchh
Q 017781 87 PEGEYATARAASAAGTIMTLSSWSTSSVEEVASTGPGIRFFQLYVYKDRNVVAQLVRRAERAGFKAIALTVDTPRLGRRE 166 (366)
Q Consensus 87 ~~~e~~la~aa~~~G~~~~vs~~~~~~~e~i~~~~~~~~~~Qly~~~d~~~~~~~l~ra~~~G~~ai~vtvd~p~~g~r~ 166 (366)
++++...+++|..+|.++++++++++++|++.+..+ ||+|+..+++...++++++.++|++.+++|+|.|..++|+
T Consensus 80 ~~ge~~~a~~A~~a~~~~i~s~~gs~~ie~~~~~~~----~q~y~~~~R~~~~~~~~~a~n~G~~~lv~t~d~~~~~~r~ 155 (360)
T COG1304 80 PEGEVINAKLAAAAGEPFILSTVGSQRIEEVAAAPP----FQLYFSKDREFAPNLVDRAANAGAKQLVLTVDSPVGGERE 155 (360)
T ss_pred hhhHHHHHHHHHHcCCCeeeeccccCcHHHhhcCcc----hhhhhHHHHHhhHHHHHHHHhcCCcceeeccCccchHHHH
Confidence 999999999999999999999999999999887643 9999999999999999999999999999999999999999
Q ss_pred HHHhhhcCCCCccccccccccccCCCcccc----chhhHHHhhhccCCCCCHHHHHHHHHhcCCCEEEEeccCHHH----
Q 017781 167 ADIKNRFTLPPFLTLKNFQGLDLGKMDEAN----DSGLAAYVAGQIDRSLSWKDVKWLQTITKLPILVKGVLTAED---- 238 (366)
Q Consensus 167 ~d~~~~~~~p~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~d~~~~~~~i~~lr~~~~~pv~vK~v~~~~d---- 238 (366)
+|.++++..|......|+.+....+-.+.. .....++.....+|..+|++++|+++.|..|+++||+.+++|
T Consensus 156 ~d~~~~i~a~~~~~h~n~~qe~~~p~g~~~~~~~~~~i~~~~~~~~~P~i~ked~~~i~~~~~~~lv~kGV~~~~D~~~a 235 (360)
T COG1304 156 RDAVNGISAPALAIHLNVLQEATQPEGDRDGKGGLDSIAEYVSALSVPVISKEDGAGISKEWAGPLVLKGILAPEDAAGA 235 (360)
T ss_pred HHHHhccCCCcccccccHHHHhcCCcccccccchhhHHHHHHHhcCCCcccHHHHhHHHHhcCCcHHHhCCCCHHHHHhh
Confidence 999999988876666665443211100001 112345666667889999999999999999999999999888
Q ss_pred HHcCCcEEEEcCCCccCCCCCcchHHHHHHHHHHcCCCceEEEecCCCCHHHHHHHHHhCcCEEEecHHHHHHhhhcCHH
Q 017781 239 VQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFIGRPVVYSLAAEGEK 318 (366)
Q Consensus 239 ~~aGad~I~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~i~vi~~GGI~~~~dv~kalalGAd~V~igr~~l~~l~~~G~~ 318 (366)
.+.|+|+|++|||||+|+||++++++.|++++++++++++||+|||||+|.|++|||+||||+|++||||||+++.+|++
T Consensus 236 ~~tg~~~I~vsnhggrqlD~g~st~~~L~ei~~av~~~~~vi~dGGiR~G~Dv~KAlALGA~~v~igrp~L~~l~~~g~~ 315 (360)
T COG1304 236 GGTGADGIEVSNHGGRQLDWGISTADSLPEIVEAVGDRIEVIADGGIRSGLDVAKALALGADAVGIGRPFLYGLAAGGEA 315 (360)
T ss_pred ccCCceEEEEEcCCCccccCCCChHHHHHHHHHHhCCCeEEEecCCCCCHHHHHHHHHhCCchhhhhHHHHHHHHhccHH
Confidence 88899999999999999999999999999999999888999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHcCCCChhhhcccceeeccC
Q 017781 319 GVRRVLEMLREEFELAMALSGCRSLKEITRDHIVTEWD 356 (366)
Q Consensus 319 gv~~~~~~l~~el~~~m~~~G~~~l~el~~~~l~~~~~ 356 (366)
||.++++.|++||+.+|.++|+++++||++..++....
T Consensus 316 GV~~~le~~~~El~~~M~L~G~~~i~el~~~~l~~~~~ 353 (360)
T COG1304 316 GVERVLEIIRKELKIAMALTGAKNIEELKRVPLVLSGR 353 (360)
T ss_pred HHHHHHHHHHHHHHHHHHhcCCCcHHHhccCceeeccc
Confidence 99999999999999999999999999999998876543
|
|
| >cd02809 alpha_hydroxyacid_oxid_FMN Family of homologous FMN-dependent alpha-hydroxyacid oxidizing enzymes | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-58 Score=444.34 Aligned_cols=295 Identities=61% Similarity=0.950 Sum_probs=278.5
Q ss_pred HHHHHHHHHhCCccchhhhcCCccchhhHHHhHhcccceeeeccccCCCCCCccceeEcCcccCCceEecccccccccCC
Q 017781 8 MEYEAIAKEKLPKMVFDYYASGAEDQWTLQENRNAFSRILFRPRILIDVSKIDMNTTVLGFKISMPIMIAPTAMQKMAHP 87 (366)
Q Consensus 8 ~d~~~~A~~~l~~~~~~y~~~ga~~~~t~~~N~~~f~~i~l~pr~l~~~~~vd~st~l~g~~l~~Pi~iApm~~~~l~~~ 87 (366)
.||++.|+++||+..|+|+.+|++++.|+++|+..|++|+|+||+|++++++||+|+|+|++++.||++|||++.++.|+
T Consensus 1 ~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~n~~~~~~i~~~~~~l~~~~~id~~~~~lg~~~~~Pi~iapm~g~~~~~~ 80 (299)
T cd02809 1 ADLRALARRRLPKAVFDYIDGGAGDEVTLRRNRAAFDRIRLRPRVLRDVSKRDTSTTLLGQKLAMPFGIAPTGLQGLAHP 80 (299)
T ss_pred ChHHHHHHHhCCHHHhhhhccccchHHHHHHHHHHHHhceeecccCCCCCCCCCceEECCeecCCCeeeCcccccccCCc
Confidence 48999999999999999999999999999999999999999999999999999999999999999999999998888899
Q ss_pred hhhHHHHHHHHHcCCceecCCCCCCCHHHHhccCCCceEEEeeecCCHHHHHHHHHHHHHcCCCEEEEecCCCCCcchhH
Q 017781 88 EGEYATARAASAAGTIMTLSSWSTSSVEEVASTGPGIRFFQLYVYKDRNVVAQLVRRAERAGFKAIALTVDTPRLGRREA 167 (366)
Q Consensus 88 ~~e~~la~aa~~~G~~~~vs~~~~~~~e~i~~~~~~~~~~Qly~~~d~~~~~~~l~ra~~~G~~ai~vtvd~p~~g~r~~ 167 (366)
+++..+|++|+++|+++++|++++.+.+++.+..+++.|+|||...+++.+.++++++++.|+++|.+++|||..+.|
T Consensus 81 ~~~~~la~aa~~~g~~~~~~~~~~~~~~~i~~~~~~~~~~ql~~~~~~~~~~~~i~~~~~~g~~~i~l~~~~p~~~~~-- 158 (299)
T cd02809 81 DGELATARAAAAAGIPFTLSTVSTTSLEEVAAAAPGPRWFQLYVPRDREITEDLLRRAEAAGYKALVLTVDTPVLGRR-- 158 (299)
T ss_pred hHHHHHHHHHHHcCCCEEecCCCcCCHHHHHHhcCCCeEEEEeecCCHHHHHHHHHHHHHcCCCEEEEecCCCCCCCC--
Confidence 999999999999999999999888899999887778999999987799999999999999999999999999853211
Q ss_pred HHhhhcCCCCccccccccccccCCCccccchhhHHHhhhccCCCCCHHHHHHHHHhcCCCEEEEeccCHHH----HHcCC
Q 017781 168 DIKNRFTLPPFLTLKNFQGLDLGKMDEANDSGLAAYVAGQIDRSLSWKDVKWLQTITKLPILVKGVLTAED----VQAGA 243 (366)
Q Consensus 168 d~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~i~~lr~~~~~pv~vK~v~~~~d----~~aGa 243 (366)
..|+.++++++.+++||++|++.+.++ .++|+
T Consensus 159 --------------------------------------------~~~~~i~~l~~~~~~pvivK~v~s~~~a~~a~~~G~ 194 (299)
T cd02809 159 --------------------------------------------LTWDDLAWLRSQWKGPLILKGILTPEDALRAVDAGA 194 (299)
T ss_pred --------------------------------------------CCHHHHHHHHHhcCCCEEEeecCCHHHHHHHHHCCC
Confidence 468899999999999999999999887 99999
Q ss_pred cEEEEcCCCccCCCCCcchHHHHHHHHHHcCCCceEEEecCCCCHHHHHHHHHhCcCEEEecHHHHHHhhhcCHHHHHHH
Q 017781 244 AGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFIGRPVVYSLAAEGEKGVRRV 323 (366)
Q Consensus 244 d~I~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~i~vi~~GGI~~~~dv~kalalGAd~V~igr~~l~~l~~~G~~gv~~~ 323 (366)
|+|+++||||++.++++++++.|+++++.+++++|||++|||+++.|++|+|++|||+|++||||++++..+|++++.++
T Consensus 195 d~I~v~~~gG~~~~~g~~~~~~l~~i~~~~~~~ipvia~GGI~~~~d~~kal~lGAd~V~ig~~~l~~~~~~g~~~v~~~ 274 (299)
T cd02809 195 DGIVVSNHGGRQLDGAPATIDALPEIVAAVGGRIEVLLDGGIRRGTDVLKALALGADAVLIGRPFLYGLAAGGEAGVAHV 274 (299)
T ss_pred CEEEEcCCCCCCCCCCcCHHHHHHHHHHHhcCCCeEEEeCCCCCHHHHHHHHHcCCCEEEEcHHHHHHHHhcCHHHHHHH
Confidence 99999999999999999999999999998865799999999999999999999999999999999999888899999999
Q ss_pred HHHHHHHHHHHHHHcCCCChhhhcc
Q 017781 324 LEMLREEFELAMALSGCRSLKEITR 348 (366)
Q Consensus 324 ~~~l~~el~~~m~~~G~~~l~el~~ 348 (366)
++.+++||+.+|.++|+++++||++
T Consensus 275 i~~l~~el~~~m~~~G~~~i~~l~~ 299 (299)
T cd02809 275 LEILRDELERAMALLGCASLADLDP 299 (299)
T ss_pred HHHHHHHHHHHHHHHCCCCHHHhCc
Confidence 9999999999999999999999974
|
This family occurs in both prokaryotes and eukaryotes. Members of this family include flavocytochrome b2 (FCB2), glycolate oxidase (GOX), lactate monooxygenase (LMO), mandelate dehydrogenase (MDH), and long chain hydroxyacid oxidase (LCHAO). In green plants, glycolate oxidase is one of the key enzymes in photorespiration where it oxidizes glycolate to glyoxylate. LMO catalyzes the oxidation of L-lactate to acetate and carbon dioxide. MDH oxidizes (S)-mandelate to phenylglyoxalate. It is an enzyme in the mandelate pathway that occurs in several strains of Pseudomonas which converts (R)-mandelate to benzoate. |
| >cd02811 IDI-2_FMN Isopentenyl-diphosphate:dimethylallyl diphosphate isomerase type 2 (IDI-2) FMN-binding domain | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.2e-39 Score=312.59 Aligned_cols=266 Identities=27% Similarity=0.384 Sum_probs=211.6
Q ss_pred HhHhcccceeeeccccC--CCCCCccceeEcCcccCCceEecccccccccCChhhHHHHHHHHHcCCceecCCCCC--CC
Q 017781 38 ENRNAFSRILFRPRILI--DVSKIDMNTTVLGFKISMPIMIAPTAMQKMAHPEGEYATARAASAAGTIMTLSSWST--SS 113 (366)
Q Consensus 38 ~N~~~f~~i~l~pr~l~--~~~~vd~st~l~g~~l~~Pi~iApm~~~~l~~~~~e~~la~aa~~~G~~~~vs~~~~--~~ 113 (366)
.+...||+|.|+|+.|+ +++++||+|+|+|+++++||++|||++++....+.+..+|++|+++|++|++++++. ..
T Consensus 17 ~~~~~~d~i~l~~~~l~~~~~~~id~s~~~~G~~l~~Pi~ia~mtGg~~~~~~in~~La~~a~~~g~~~~~Gs~~~~~~~ 96 (326)
T cd02811 17 GGSTGFDDVRLVHNALPELDLDDIDLSTEFLGKRLSAPLLISAMTGGSEKAKEINRNLAEAAEELGIAMGVGSQRAALED 96 (326)
T ss_pred cCCCChhhEEEecccCCCCCcccCCCeeEECCceecCCEEEeCCCCCChHHHHHHHHHHHHHHHcCCCeEecCchhhccC
Confidence 35677999999999998 789999999999999999999999987653333457899999999999999998742 12
Q ss_pred ------HHHHhccCC-CceEEEeeecC----CHHHHHHHHHHHHHcCCCEEEEecCCCCCcchhHHHhhhcCCCCccccc
Q 017781 114 ------VEEVASTGP-GIRFFQLYVYK----DRNVVAQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLTLK 182 (366)
Q Consensus 114 ------~e~i~~~~~-~~~~~Qly~~~----d~~~~~~~l~ra~~~G~~ai~vtvd~p~~g~r~~d~~~~~~~p~~~~~~ 182 (366)
.+.+++..+ .+++.++.... +.+...+ .++..+++++.++++++..
T Consensus 97 ~e~~~~~~~vr~~~~~~p~~~Nl~~~~~~~~~~~~~~~---~i~~~~adalel~l~~~q~-------------------- 153 (326)
T cd02811 97 PELAESFTVVREAPPNGPLIANLGAVQLNGYGVEEARR---AVEMIEADALAIHLNPLQE-------------------- 153 (326)
T ss_pred hhhhhHHHHHHHhCCCceEEeecCccccCCCCHHHHHH---HHHhcCCCcEEEeCcchHh--------------------
Confidence 233344445 56666665433 4444333 4455678999998875421
Q ss_pred cccccccCCCccccchhhHHHhhhccCCCC-CH-HHHHHHHHhcCCCEEEEec---cCHHH----HHcCCcEEEEcCCCc
Q 017781 183 NFQGLDLGKMDEANDSGLAAYVAGQIDRSL-SW-KDVKWLQTITKLPILVKGV---LTAED----VQAGAAGIIVSNHGA 253 (366)
Q Consensus 183 ~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~-~~-~~i~~lr~~~~~pv~vK~v---~~~~d----~~aGad~I~vs~~gg 253 (366)
..++..+.++ .| +.++++++.+++||++|++ .+.++ .++|+|+|+|+|+||
T Consensus 154 --------------------~~~~~~~~df~~~~~~i~~l~~~~~vPVivK~~g~g~s~~~a~~l~~~Gvd~I~vsG~GG 213 (326)
T cd02811 154 --------------------AVQPEGDRDFRGWLERIEELVKALSVPVIVKEVGFGISRETAKRLADAGVKAIDVAGAGG 213 (326)
T ss_pred --------------------hcCCCCCcCHHHHHHHHHHHHHhcCCCEEEEecCCCCCHHHHHHHHHcCCCEEEECCCCC
Confidence 0011122233 23 6799999999999999987 56666 899999999999988
Q ss_pred c---------C-----------CCCCcchHHHHHHHHHHcCCCceEEEecCCCCHHHHHHHHHhCcCEEEecHHHHHHhh
Q 017781 254 R---------Q-----------LDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFIGRPVVYSLA 313 (366)
Q Consensus 254 ~---------~-----------~~~~~~~~~~l~~i~~~~~~~i~vi~~GGI~~~~dv~kalalGAd~V~igr~~l~~l~ 313 (366)
+ + .+++.++.+.|.++++.+. ++|||++|||+++.|++|+|++|||+|++|||||+++.
T Consensus 214 t~~~~ie~~r~~~~~~~~~~~~~~~g~~t~~~l~~~~~~~~-~ipIiasGGIr~~~dv~kal~lGAd~V~i~~~~L~~~~ 292 (326)
T cd02811 214 TSWARVENYRAKDSDQRLAEYFADWGIPTAASLLEVRSALP-DLPLIASGGIRNGLDIAKALALGADLVGMAGPFLKAAL 292 (326)
T ss_pred CcccccccccccccccccccccccccccHHHHHHHHHHHcC-CCcEEEECCCCCHHHHHHHHHhCCCEEEEcHHHHHHHh
Confidence 3 1 2346778889999988764 79999999999999999999999999999999999876
Q ss_pred hcCHHHHHHHHHHHHHHHHHHHHHcCCCChhhhcc
Q 017781 314 AEGEKGVRRVLEMLREEFELAMALSGCRSLKEITR 348 (366)
Q Consensus 314 ~~G~~gv~~~~~~l~~el~~~m~~~G~~~l~el~~ 348 (366)
. |++++.++++.+.+||+.+|.++|+++++||+.
T Consensus 293 ~-g~~~~~~~i~~~~~el~~~m~~~G~~si~el~~ 326 (326)
T cd02811 293 E-GEEAVIETIEQIIEELRTAMFLTGAKNLAELKQ 326 (326)
T ss_pred c-CHHHHHHHHHHHHHHHHHHHHHhCCCCHHHhcC
Confidence 6 999999999999999999999999999999973
|
Two types of IDIs have been characterized at present. The long known IDI-1 is only dependent on divalent metals for activity, whereas IDI-2 requires a metal, FMN and NADPH. IDI-2 catalyzes the interconversion of isopentenyl diphosphate (IPP) and dimethylallyl diphosphate (DMAPP) in the mevalonate pathway. |
| >PRK05437 isopentenyl pyrophosphate isomerase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.3e-39 Score=313.51 Aligned_cols=275 Identities=26% Similarity=0.364 Sum_probs=219.0
Q ss_pred HhcccceeeeccccC--CCCCCccceeEcCcccCCceEecccccccccCChhhHHHHHHHHHcCCceecCCCCC--CC--
Q 017781 40 RNAFSRILFRPRILI--DVSKIDMNTTVLGFKISMPIMIAPTAMQKMAHPEGEYATARAASAAGTIMTLSSWST--SS-- 113 (366)
Q Consensus 40 ~~~f~~i~l~pr~l~--~~~~vd~st~l~g~~l~~Pi~iApm~~~~l~~~~~e~~la~aa~~~G~~~~vs~~~~--~~-- 113 (366)
...||+|+|.|+.|+ +.++|||||+|+|.+++.||+++||++++-...+.|.+||++|+++|+++++++++. .+
T Consensus 27 ~~~~d~v~l~~~~lp~~~~~~vd~s~~~~g~~l~~Pi~i~~MtGgs~~~~~in~~La~~a~~~G~~~~~Gs~~~~~~~~~ 106 (352)
T PRK05437 27 TTGFDDVRLIHNALPELDLDDIDLSTEFLGKKLSAPFLINAMTGGSEKAKEINRKLAEAAEELGIAMGVGSQRAALKDPE 106 (352)
T ss_pred CCChheEEEecccCCCCChhhccceeeECCceecCCEEecccCCCChhHHHHHHHHHHHHHHcCCCeEecccHhhccChh
Confidence 456999999999998 788999999999999999999999988653333557899999999999999998852 11
Q ss_pred ----HHHHhccCC-CceEEEeeecCCHHH-HHHHHHHHHHcCCCEEEEecCCCCCcchhHHHhhhcCCCCcccccccccc
Q 017781 114 ----VEEVASTGP-GIRFFQLYVYKDRNV-VAQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLTLKNFQGL 187 (366)
Q Consensus 114 ----~e~i~~~~~-~~~~~Qly~~~d~~~-~~~~l~ra~~~G~~ai~vtvd~p~~g~r~~d~~~~~~~p~~~~~~~~~~~ 187 (366)
.+.+++.+| .|.+.+|........ ..+..+.++..+++++.++++++..
T Consensus 107 ~~~~~~~vr~~~p~~p~~aNl~~~~~~~~~~~~~~~~~~~~~adal~l~l~~~qe------------------------- 161 (352)
T PRK05437 107 LADSFSVVRKVAPDGLLFANLGAVQLYGYGVEEAQRAVEMIEADALQIHLNPLQE------------------------- 161 (352)
T ss_pred hHHHHHHHHHHCCCceEEeecCccccCCCCHHHHHHHHHhcCCCcEEEeCccchh-------------------------
Confidence 222344444 567777765433222 2233444556789999998876521
Q ss_pred ccCCCccccchhhHHHhhhccCCCCC--HHHHHHHHHhcCCCEEEEec---cCHHH----HHcCCcEEEEcCCCcc----
Q 017781 188 DLGKMDEANDSGLAAYVAGQIDRSLS--WKDVKWLQTITKLPILVKGV---LTAED----VQAGAAGIIVSNHGAR---- 254 (366)
Q Consensus 188 ~~~~~~~~~~~~~~~~~~~~~d~~~~--~~~i~~lr~~~~~pv~vK~v---~~~~d----~~aGad~I~vs~~gg~---- 254 (366)
..++..+.++. .+.++++++.+++||++|++ .+.++ .++|+|+|+|+|+||+
T Consensus 162 ---------------~~~p~g~~~f~~~le~i~~i~~~~~vPVivK~~g~g~s~~~a~~l~~~Gvd~I~Vsg~GGt~~~~ 226 (352)
T PRK05437 162 ---------------LVQPEGDRDFRGWLDNIAEIVSALPVPVIVKEVGFGISKETAKRLADAGVKAIDVAGAGGTSWAA 226 (352)
T ss_pred ---------------hcCCCCcccHHHHHHHHHHHHHhhCCCEEEEeCCCCCcHHHHHHHHHcCCCEEEECCCCCCCccc
Confidence 01111223332 36799999999999999988 66666 8899999999999882
Q ss_pred -----C---------CCCCcchHHHHHHHHHHcCCCceEEEecCCCCHHHHHHHHHhCcCEEEecHHHHHHhhhcCHHHH
Q 017781 255 -----Q---------LDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFIGRPVVYSLAAEGEKGV 320 (366)
Q Consensus 255 -----~---------~~~~~~~~~~l~~i~~~~~~~i~vi~~GGI~~~~dv~kalalGAd~V~igr~~l~~l~~~G~~gv 320 (366)
. .+++.++.+.|.++++.+ .++|||++|||+++.|++|+|++|||+|++||+||+++...|++++
T Consensus 227 ie~~R~~~~~~~~~~~~~g~pt~~~l~~i~~~~-~~ipvia~GGI~~~~dv~k~l~~GAd~v~ig~~~l~~~~~~g~~~v 305 (352)
T PRK05437 227 IENYRARDDRLASYFADWGIPTAQSLLEARSLL-PDLPIIASGGIRNGLDIAKALALGADAVGMAGPFLKAALEGGEEAV 305 (352)
T ss_pred hhhhhhhccccccccccccCCHHHHHHHHHHhc-CCCeEEEECCCCCHHHHHHHHHcCCCEEEEhHHHHHHHHhccHHHH
Confidence 2 256788999999998874 3799999999999999999999999999999999999888899999
Q ss_pred HHHHHHHHHHHHHHHHHcCCCChhhhcccceeecc
Q 017781 321 RRVLEMLREEFELAMALSGCRSLKEITRDHIVTEW 355 (366)
Q Consensus 321 ~~~~~~l~~el~~~m~~~G~~~l~el~~~~l~~~~ 355 (366)
.++++.+.+||+.+|.++|+++++||++..++..+
T Consensus 306 ~~~i~~~~~eL~~~m~~~G~~~i~eL~~~~~~~~~ 340 (352)
T PRK05437 306 IELIEQWIEELKIAMFLTGAKNIAELRKVPLVLSG 340 (352)
T ss_pred HHHHHHHHHHHHHHHHHhCCCCHHHhCCCCEEecH
Confidence 99999999999999999999999999998776544
|
|
| >TIGR02151 IPP_isom_2 isopentenyl-diphosphate delta-isomerase, type 2 | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-37 Score=302.35 Aligned_cols=272 Identities=26% Similarity=0.368 Sum_probs=210.8
Q ss_pred hcccceeeeccccC--CCCCCccceeEcCcccCCceEecccccccccCChhhHHHHHHHHHcCCceecCCCCCC--C---
Q 017781 41 NAFSRILFRPRILI--DVSKIDMNTTVLGFKISMPIMIAPTAMQKMAHPEGEYATARAASAAGTIMTLSSWSTS--S--- 113 (366)
Q Consensus 41 ~~f~~i~l~pr~l~--~~~~vd~st~l~g~~l~~Pi~iApm~~~~l~~~~~e~~la~aa~~~G~~~~vs~~~~~--~--- 113 (366)
..||+|+|+|..|+ +++++||||+|+|+++++||+++||++++......+..++++|+++|+++++++++.. .
T Consensus 21 ~~~~~~~~~~~~lp~~~~~~~d~s~~~~g~~l~~Pi~iaaMtGg~~~~~~in~~La~~a~~~g~~~~~Gs~~~~~~~~~~ 100 (333)
T TIGR02151 21 TGFDDITLIHNALPEINLDDIDLTTEFLGKRLKAPFYINAMTGGSEEAGKINRNLARAARELGIPMGVGSQRAALKDPET 100 (333)
T ss_pred CCcceEEEecCCCCCCCcccCCCceEECCccccCCEEEeCCCCCchhHHHHHHHHHHHHHHcCCCeEEcCchhhccChhh
Confidence 45999999999997 6789999999999999999999999876522233478999999999999999987521 1
Q ss_pred ---HHHHhccCC-CceEEEeeecCCHH-HHHHHHHHHHHcCCCEEEEecCCCCCcchhHHHhhhcCCCCccccccccccc
Q 017781 114 ---VEEVASTGP-GIRFFQLYVYKDRN-VVAQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLTLKNFQGLD 188 (366)
Q Consensus 114 ---~e~i~~~~~-~~~~~Qly~~~d~~-~~~~~l~ra~~~G~~ai~vtvd~p~~g~r~~d~~~~~~~p~~~~~~~~~~~~ 188 (366)
...+++..+ .|.+.++......+ ...+..+.++..+++++.++++++..
T Consensus 101 ~~~~~~vr~~~~~~p~i~nl~~~~~~~~~~~~~~~~i~~i~adal~i~ln~~q~-------------------------- 154 (333)
T TIGR02151 101 ADTFEVVREEAPNGPLIANIGAPQLVEGGPEEAQEAIDMIEADALAIHLNVLQE-------------------------- 154 (333)
T ss_pred HhHHHHHHHhCCCCcEEeecCchhhccccHHHHHHHHHHhcCCCEEEcCccccc--------------------------
Confidence 122333333 55666654322211 13334444556688999998876521
Q ss_pred cCCCccccchhhHHHhhhccCCCC-CH-HHHHHHHHhcCCCEEEEec---cCHHH----HHcCCcEEEEcCCCccC----
Q 017781 189 LGKMDEANDSGLAAYVAGQIDRSL-SW-KDVKWLQTITKLPILVKGV---LTAED----VQAGAAGIIVSNHGARQ---- 255 (366)
Q Consensus 189 ~~~~~~~~~~~~~~~~~~~~d~~~-~~-~~i~~lr~~~~~pv~vK~v---~~~~d----~~aGad~I~vs~~gg~~---- 255 (366)
..++..+.++ .| +.++++++.+++||++|.+ .+.+. .++|+|+|+|+|+||+.
T Consensus 155 --------------~~~p~g~~~f~~~le~i~~i~~~~~vPVivK~~g~g~~~~~a~~L~~aGvd~I~Vsg~gGt~~~~i 220 (333)
T TIGR02151 155 --------------LVQPEGDRNFKGWLEKIAEICSQLSVPVIVKEVGFGISKEVAKLLADAGVSAIDVAGAGGTSWAQV 220 (333)
T ss_pred --------------ccCCCCCcCHHHHHHHHHHHHHhcCCCEEEEecCCCCCHHHHHHHHHcCCCEEEECCCCCCcccch
Confidence 0111123333 23 6799999999999999987 56655 89999999999998753
Q ss_pred --------------CCCCcchHHHHHHHHHHcCCCceEEEecCCCCHHHHHHHHHhCcCEEEecHHHHHHhhhcCHHHHH
Q 017781 256 --------------LDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFIGRPVVYSLAAEGEKGVR 321 (366)
Q Consensus 256 --------------~~~~~~~~~~l~~i~~~~~~~i~vi~~GGI~~~~dv~kalalGAd~V~igr~~l~~l~~~G~~gv~ 321 (366)
.+++.++.+.|.++++ +..++|||++|||+++.|++|+|++|||+|++||+||.++...|+++|.
T Consensus 221 e~~r~~~~~~~~~~~~~g~~t~~~l~~~~~-~~~~ipVIasGGI~~~~di~kaLalGAd~V~igr~~L~~~~~~g~~~v~ 299 (333)
T TIGR02151 221 ENYRAKGSNLASFFNDWGIPTAASLLEVRS-DAPDAPIIASGGLRTGLDVAKAIALGADAVGMARPFLKAALDEGEEAVI 299 (333)
T ss_pred hhhcccccccchhhhcccHhHHHHHHHHHh-cCCCCeEEEECCCCCHHHHHHHHHhCCCeehhhHHHHHHHHhcCHHHHH
Confidence 2346677788888876 2237999999999999999999999999999999999987667999999
Q ss_pred HHHHHHHHHHHHHHHHcCCCChhhhcccceee
Q 017781 322 RVLEMLREEFELAMALSGCRSLKEITRDHIVT 353 (366)
Q Consensus 322 ~~~~~l~~el~~~m~~~G~~~l~el~~~~l~~ 353 (366)
++++.+.+||+.+|.++|+++++||++..++.
T Consensus 300 ~~i~~~~~eL~~~m~~~G~~~i~el~~~~~~~ 331 (333)
T TIGR02151 300 EEIELIIEELKVAMFLTGAKTIAELKKVPLVI 331 (333)
T ss_pred HHHHHHHHHHHHHHHHhCCCCHHHHccCCeEe
Confidence 99999999999999999999999999886653
|
Isopentenyl-diphosphate delta-isomerase (IPP isomerase) interconverts isopentenyl diphosphate and dimethylallyl diphosphate. This model represents the type 2 enzyme. FMN, NADPH, and Mg2+ are required by this form, which lacks homology to the type 1 enzyme (TIGR02150). IPP is precursor to many compounds, including enzyme cofactors, sterols, and isoprenoids. |
| >TIGR01306 GMP_reduct_2 guanosine monophosphate reductase, bacterial | Back alignment and domain information |
|---|
Probab=99.97 E-value=3.8e-29 Score=239.68 Aligned_cols=251 Identities=20% Similarity=0.246 Sum_probs=189.2
Q ss_pred cccceeeeccccC--CCCCCccceeEcCcccCCceEecccccccccCChhhHHHHHHHHHcCCceecCCCCCCCHHHH--
Q 017781 42 AFSRILFRPRILI--DVSKIDMNTTVLGFKISMPIMIAPTAMQKMAHPEGEYATARAASAAGTIMTLSSWSTSSVEEV-- 117 (366)
Q Consensus 42 ~f~~i~l~pr~l~--~~~~vd~st~l~g~~l~~Pi~iApm~~~~l~~~~~e~~la~aa~~~G~~~~vs~~~~~~~e~i-- 117 (366)
.||++.|+|..++ +.+++||+|+|+|++++.||++++|. ...|..||++|+++|...++..+ ++|+.
T Consensus 3 ~FddV~lvp~~lp~~s~~dVdlst~~~~~~l~~P~~inAM~------t~in~~LA~~a~~~G~~~i~hK~---~~E~~~s 73 (321)
T TIGR01306 3 DYEDIQLIPNKCIVNSRSECDTSVTLGKHKFKLPVVPANMQ------TIIDEKLAEQLAENGYFYIMHRF---DEESRIP 73 (321)
T ss_pred CcccEEEecCCCCCCCHHHceeeEEECCcEecCcEEeeccc------hhhhHHHHHHHHHcCCEEEEecC---CHHHHHH
Confidence 6999999999997 45799999999999999999999994 25799999999999999998663 45543
Q ss_pred --hccCCCceEEEeeecCCHHHHHHHHHHHHHcC--CCEEEEecCCCCCcchhHHHhhhcCCCCccccccccccccCCCc
Q 017781 118 --ASTGPGIRFFQLYVYKDRNVVAQLVRRAERAG--FKAIALTVDTPRLGRREADIKNRFTLPPFLTLKNFQGLDLGKMD 193 (366)
Q Consensus 118 --~~~~~~~~~~Qly~~~d~~~~~~~l~ra~~~G--~~ai~vtvd~p~~g~r~~d~~~~~~~p~~~~~~~~~~~~~~~~~ 193 (366)
.+..+......+..+...+.. +.+....++| .+.+++ |+.+
T Consensus 74 fvrk~k~~~L~v~~SvG~t~e~~-~r~~~lv~a~~~~d~i~~--D~ah-------------------------------- 118 (321)
T TIGR01306 74 FIKDMQERGLFASISVGVKACEY-EFVTQLAEEALTPEYITI--DIAH-------------------------------- 118 (321)
T ss_pred HHHhccccccEEEEEcCCCHHHH-HHHHHHHhcCCCCCEEEE--eCcc--------------------------------
Confidence 233232223444444444433 3444455566 466655 4321
Q ss_pred cccchhhHHHhhhccCCCCCHHHHHHHHHhcCCCEEEEe-ccCHHH----HHcCCcEEEEcCCCccCC--------CCCc
Q 017781 194 EANDSGLAAYVAGQIDRSLSWKDVKWLQTITKLPILVKG-VLTAED----VQAGAAGIIVSNHGARQL--------DYVP 260 (366)
Q Consensus 194 ~~~~~~~~~~~~~~~d~~~~~~~i~~lr~~~~~pv~vK~-v~~~~d----~~aGad~I~vs~~gg~~~--------~~~~ 260 (366)
++....++.++++|+.++.|+++|+ +.+.++ .++|||+|.|++++|+.. ..+.
T Consensus 119 --------------g~s~~~~~~i~~i~~~~p~~~vi~GnV~t~e~a~~l~~aGad~I~V~~G~G~~~~tr~~~g~g~~~ 184 (321)
T TIGR01306 119 --------------GHSNSVINMIKHIKTHLPDSFVIAGNVGTPEAVRELENAGADATKVGIGPGKVCITKIKTGFGTGG 184 (321)
T ss_pred --------------CchHHHHHHHHHHHHhCCCCEEEEecCCCHHHHHHHHHcCcCEEEECCCCCccccceeeeccCCCc
Confidence 1122356789999999988867676 888887 999999999998877631 2223
Q ss_pred chHHHHHHHHHHcCCCceEEEecCCCCHHHHHHHHHhCcCEEEecHHHH--------------------HHhhh------
Q 017781 261 ATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFIGRPVV--------------------YSLAA------ 314 (366)
Q Consensus 261 ~~~~~l~~i~~~~~~~i~vi~~GGI~~~~dv~kalalGAd~V~igr~~l--------------------~~l~~------ 314 (366)
+.++++.+++++. ++|||+||||+++.|++|||++|||+||+|++|- +++..
T Consensus 185 ~~l~ai~ev~~a~--~~pVIadGGIr~~~Di~KALa~GAd~Vmig~~~ag~~Espg~~~~~~g~~~k~y~g~~~~~~~~~ 262 (321)
T TIGR01306 185 WQLAALRWCAKAA--RKPIIADGGIRTHGDIAKSIRFGASMVMIGSLFAGHEESPGETVEKDGKLYKEYFGSASEFQKGE 262 (321)
T ss_pred hHHHHHHHHHHhc--CCeEEEECCcCcHHHHHHHHHcCCCEEeechhhcCcccCCCceEeeCCeEHhhhcCchhhhcccc
Confidence 4667899999887 7999999999999999999999999999999882 22110
Q ss_pred ----cCH-------HHHHHHHHHHHHHHHHHHHHcCCCChhhhccccee
Q 017781 315 ----EGE-------KGVRRVLEMLREEFELAMALSGCRSLKEITRDHIV 352 (366)
Q Consensus 315 ----~G~-------~gv~~~~~~l~~el~~~m~~~G~~~l~el~~~~l~ 352 (366)
.|. ..+.+++..+...|+..|.++|+++++||+...++
T Consensus 263 ~~~~eg~~~~v~~~g~~~~~~~~~~~glr~~~~~~G~~~l~~~~~~~~~ 311 (321)
T TIGR01306 263 HKNVEGKKMFVEHKGSLSDTLIEMQQDLQSSISYAGGKDLDSLRTVDYV 311 (321)
T ss_pred cccccceEEEeccCCCHHHHHHHHHHHHHHHHHhcCCCcHHHHhhCCEE
Confidence 010 12889999999999999999999999999977543
|
A deep split separates two families of GMP reductase. The other (TIGR01305) is found in eukaryotic and some proteobacterial lineages, including E. coli, while this family is found in a variety of bacterial lineages. |
| >PRK05458 guanosine 5'-monophosphate oxidoreductase; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.1e-28 Score=237.51 Aligned_cols=250 Identities=19% Similarity=0.243 Sum_probs=191.1
Q ss_pred cccceeeeccccC--CCCCCccceeEcCcccCCceEecccccccccCChhhHHHHHHHHHcCCceecCCCCCCCHHHHh-
Q 017781 42 AFSRILFRPRILI--DVSKIDMNTTVLGFKISMPIMIAPTAMQKMAHPEGEYATARAASAAGTIMTLSSWSTSSVEEVA- 118 (366)
Q Consensus 42 ~f~~i~l~pr~l~--~~~~vd~st~l~g~~l~~Pi~iApm~~~~l~~~~~e~~la~aa~~~G~~~~vs~~~~~~~e~i~- 118 (366)
.||++.|+|..++ +++++|+||+|+|++++.||++++|. ...|..||++|+++|...++.-+ ++|+..
T Consensus 6 ~Fddv~lv~~~lp~~s~~dvdlst~~~~~~l~~P~~inAM~------t~iN~~LA~~a~~~G~~~~~~k~---~~e~~~~ 76 (326)
T PRK05458 6 DYEDIQLIPNKCIVNSRSECDTSVTLGPRTFKLPVVPANMQ------TIIDEKIAEWLAENGYFYIMHRF---DPEARIP 76 (326)
T ss_pred CccceEEecCCCCCCCHHHcccceEECCcEecCcEEEeccc------chhHHHHHHHHHHcCCEEEEecC---CHHHHHH
Confidence 5999999999997 56799999999999999999999994 25799999999999998888552 455432
Q ss_pred ---ccCCCceEEEeeecCCHHHHHHHHHHHHHcCC--CEEEEecCCCCCcchhHHHhhhcCCCCccccccccccccCCCc
Q 017781 119 ---STGPGIRFFQLYVYKDRNVVAQLVRRAERAGF--KAIALTVDTPRLGRREADIKNRFTLPPFLTLKNFQGLDLGKMD 193 (366)
Q Consensus 119 ---~~~~~~~~~Qly~~~d~~~~~~~l~ra~~~G~--~ai~vtvd~p~~g~r~~d~~~~~~~p~~~~~~~~~~~~~~~~~ 193 (366)
+..+...+..+-+..+++.. +.++...++|+ ++|+| |+...
T Consensus 77 ~~r~~~~~~l~v~~~vg~~~~~~-~~~~~Lv~ag~~~d~i~i--D~a~g------------------------------- 122 (326)
T PRK05458 77 FIKDMHEQGLIASISVGVKDDEY-DFVDQLAAEGLTPEYITI--DIAHG------------------------------- 122 (326)
T ss_pred HHHhccccccEEEEEecCCHHHH-HHHHHHHhcCCCCCEEEE--ECCCC-------------------------------
Confidence 33333334555555444433 34455556754 87776 43210
Q ss_pred cccchhhHHHhhhccCCCCCHHHHHHHHHhcC-CCEEEEeccCHHH----HHcCCcEEEEcCCCccCC------CCCcc-
Q 017781 194 EANDSGLAAYVAGQIDRSLSWKDVKWLQTITK-LPILVKGVLTAED----VQAGAAGIIVSNHGARQL------DYVPA- 261 (366)
Q Consensus 194 ~~~~~~~~~~~~~~~d~~~~~~~i~~lr~~~~-~pv~vK~v~~~~d----~~aGad~I~vs~~gg~~~------~~~~~- 261 (366)
+.....+.|+++|+.++ .||++|.+.+.++ .++|+|+|.|++++|++. ..+.+
T Consensus 123 ---------------h~~~~~e~I~~ir~~~p~~~vi~g~V~t~e~a~~l~~aGad~i~vg~~~G~~~~t~~~~g~~~~~ 187 (326)
T PRK05458 123 ---------------HSDSVINMIQHIKKHLPETFVIAGNVGTPEAVRELENAGADATKVGIGPGKVCITKIKTGFGTGG 187 (326)
T ss_pred ---------------chHHHHHHHHHHHhhCCCCeEEEEecCCHHHHHHHHHcCcCEEEECCCCCcccccccccCCCCCc
Confidence 11123456999999995 8888888999988 999999999999999651 22445
Q ss_pred -hHHHHHHHHHHcCCCceEEEecCCCCHHHHHHHHHhCcCEEEecHHHH------------------HHh-----hh---
Q 017781 262 -TIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFIGRPVV------------------YSL-----AA--- 314 (366)
Q Consensus 262 -~~~~l~~i~~~~~~~i~vi~~GGI~~~~dv~kalalGAd~V~igr~~l------------------~~l-----~~--- 314 (366)
.++++.++++.+ ++|||++|||+++.|++|||++|||+||+|++|+ .-+ ..
T Consensus 188 w~l~ai~~~~~~~--~ipVIAdGGI~~~~Di~KaLa~GA~aV~vG~~~~~~~espg~~~~~~g~~~k~y~g~~~~~~~~~ 265 (326)
T PRK05458 188 WQLAALRWCAKAA--RKPIIADGGIRTHGDIAKSIRFGATMVMIGSLFAGHEESPGKTVEIDGKLYKEYFGSASEFQKGE 265 (326)
T ss_pred cHHHHHHHHHHHc--CCCEEEeCCCCCHHHHHHHHHhCCCEEEechhhcCCccCCCceeeecchhHHHhhCcHhhhcccc
Confidence 455688998877 7999999999999999999999999999999997 111 01
Q ss_pred ----cCHH-------HHHHHHHHHHHHHHHHHHHcCCCChhhhcccce
Q 017781 315 ----EGEK-------GVRRVLEMLREEFELAMALSGCRSLKEITRDHI 351 (366)
Q Consensus 315 ----~G~~-------gv~~~~~~l~~el~~~m~~~G~~~l~el~~~~l 351 (366)
+|.+ .+.+++..+..+|+..|.++|++++.||+...+
T Consensus 266 ~~~~eG~e~~v~~~G~l~~~l~~l~~gLr~~m~~~Ga~~i~el~~~~~ 313 (326)
T PRK05458 266 YKNVEGKKILVPHKGSLKDTLTEMEQDLQSSISYAGGRDLDAIRKVDY 313 (326)
T ss_pred ccccCCceEEecccCCHHHHHHHHHHHHHHHHHHhCCCCHHHHhcCCE
Confidence 2323 488899999999999999999999999997633
|
|
| >TIGR01305 GMP_reduct_1 guanosine monophosphate reductase, eukaryotic | Back alignment and domain information |
|---|
Probab=99.96 E-value=2.1e-27 Score=226.02 Aligned_cols=252 Identities=22% Similarity=0.256 Sum_probs=189.3
Q ss_pred hcccceeeecccc--CCCCCCccceeEcCc-----ccCCceEecccccccccCChhhHHHHHHHHHcCCceecCCCCCCC
Q 017781 41 NAFSRILFRPRIL--IDVSKIDMNTTVLGF-----KISMPIMIAPTAMQKMAHPEGEYATARAASAAGTIMTLSSWSTSS 113 (366)
Q Consensus 41 ~~f~~i~l~pr~l--~~~~~vd~st~l~g~-----~l~~Pi~iApm~~~~l~~~~~e~~la~aa~~~G~~~~vs~~~~~~ 113 (366)
-.|||+.|+|+.- .+-+++||+++|..+ .+..||+-|.|--. ++.++|.+.+++|...+++- +.+
T Consensus 8 l~f~DVll~P~~s~v~sR~evdl~~~~~~~~~~~~~~~iPii~AnMdtv------~~~~mA~~la~~g~~~~iHk--~~~ 79 (343)
T TIGR01305 8 LDFKDVLLRPKRSTLKSRADVELERTFTFRNSKQTYSGVPIIAANMDTV------GTFEMAAALSQHSIFTAIHK--HYS 79 (343)
T ss_pred CCccceEEecCcCccCcHHHceeeEEEccccCCceeeCCceEecCCCcc------cCHHHHHHHHHCCCeEEEee--CCC
Confidence 3699999999754 355899999999744 78999999999533 48899999999999999965 345
Q ss_pred HHHHhc----cCCCc-eEEEeeecCCHHHHHHHHHHHHHc--CCCEEEEecCCCCCcchhHHHhhhcCCCCccccccccc
Q 017781 114 VEEVAS----TGPGI-RFFQLYVYKDRNVVAQLVRRAERA--GFKAIALTVDTPRLGRREADIKNRFTLPPFLTLKNFQG 186 (366)
Q Consensus 114 ~e~i~~----~~~~~-~~~Qly~~~d~~~~~~~l~ra~~~--G~~ai~vtvd~p~~g~r~~d~~~~~~~p~~~~~~~~~~ 186 (366)
+|+..+ ..+.. ...-+..+-.+ ...+.++.+.++ +.+.|+| |+.+ |
T Consensus 80 ~e~~~~~v~~~~~~~~~~~~vsvG~~~-~d~er~~~L~~a~~~~d~ivi--D~Ah----------G-------------- 132 (343)
T TIGR01305 80 VDEWKAFATNSSPDCLQNVAVSSGSSD-NDLEKMTSILEAVPQLKFICL--DVAN----------G-------------- 132 (343)
T ss_pred HHHHHHHHHhhcccccceEEEEeccCH-HHHHHHHHHHhcCCCCCEEEE--ECCC----------C--------------
Confidence 665332 12211 11111222222 223455555555 4777776 3321 1
Q ss_pred cccCCCccccchhhHHHhhhccCCCCCHHHHHHHHHhcCCCEEEEe-ccCHHH----HHcCCcEEEEc-----CCCccCC
Q 017781 187 LDLGKMDEANDSGLAAYVAGQIDRSLSWKDVKWLQTITKLPILVKG-VLTAED----VQAGAAGIIVS-----NHGARQL 256 (366)
Q Consensus 187 ~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~i~~lr~~~~~pv~vK~-v~~~~d----~~aGad~I~vs-----~~gg~~~ 256 (366)
+.....+.|+|+|+.|+.+.++|| +.++++ .++|||+|.|+ +|++|+.
T Consensus 133 ----------------------hs~~~i~~ik~ir~~~p~~~viaGNV~T~e~a~~Li~aGAD~ikVgiGpGSicttR~~ 190 (343)
T TIGR01305 133 ----------------------YSEHFVEFVKLVREAFPEHTIMAGNVVTGEMVEELILSGADIVKVGIGPGSVCTTRTK 190 (343)
T ss_pred ----------------------cHHHHHHHHHHHHhhCCCCeEEEecccCHHHHHHHHHcCCCEEEEcccCCCcccCcee
Confidence 122356789999999988889998 899987 99999999999 7888888
Q ss_pred CCCc-chHHHHHHHHHHcCC-CceEEEecCCCCHHHHHHHHHhCcCEEEecHHHH--------------------HHhhh
Q 017781 257 DYVP-ATIMALEEVVKATQG-RIPVFLDGGVRRGTDVFKALALGASGIFIGRPVV--------------------YSLAA 314 (366)
Q Consensus 257 ~~~~-~~~~~l~~i~~~~~~-~i~vi~~GGI~~~~dv~kalalGAd~V~igr~~l--------------------~~l~~ 314 (366)
++.. |++++|++++++.++ ++|||+||||+++.||+|||++|||+||+|+.|. ++++.
T Consensus 191 ~Gvg~pqltAv~~~a~aa~~~~v~VIaDGGIr~~gDI~KALA~GAd~VMlG~llAG~~Espg~~i~~~G~~~K~yrGMgS 270 (343)
T TIGR01305 191 TGVGYPQLSAVIECADAAHGLKGHIISDGGCTCPGDVAKAFGAGADFVMLGGMFAGHTESGGEVIERNGRKFKLFYGMSS 270 (343)
T ss_pred CCCCcCHHHHHHHHHHHhccCCCeEEEcCCcCchhHHHHHHHcCCCEEEECHhhhCcCcCcceeEeECCEEEEEEeccch
Confidence 7754 899999999998876 7999999999999999999999999999997662 11111
Q ss_pred -----------------cCH-------HHHHHHHHHHHHHHHHHHHHcCCCChhhhccc
Q 017781 315 -----------------EGE-------KGVRRVLEMLREEFELAMALSGCRSLKEITRD 349 (366)
Q Consensus 315 -----------------~G~-------~gv~~~~~~l~~el~~~m~~~G~~~l~el~~~ 349 (366)
+|. ..+.+++..+...|+..|.++|..+++||++.
T Consensus 271 ~~Am~~~~g~~~ry~~~EG~e~~vp~kG~v~~~l~~l~gGlrs~m~Y~Ga~~i~el~~~ 329 (343)
T TIGR01305 271 DTAMKKHAGGVAEYRASEGKTVEVPYRGDVENTILDILGGLRSACTYVGAAKLKELSKR 329 (343)
T ss_pred HHHHhhccCcccccccccCceEEeccCCcHHHHHHHHHHHHHHHhhccCcCcHHHHHhC
Confidence 010 02788999999999999999999999999654
|
A deep split separates two families of GMP reductase. This family includes both eukaryotic and some proteobacterial sequences, while the other family contains other bacterial sequences. |
| >cd02808 GltS_FMN Glutamate synthase (GltS) FMN-binding domain | Back alignment and domain information |
|---|
Probab=99.95 E-value=7.7e-26 Score=224.76 Aligned_cols=267 Identities=25% Similarity=0.267 Sum_probs=184.2
Q ss_pred CCccceeEcC-----cccCCceEecccccccccCChhhHHHHHHHHHcCCceecCCCCCCCHHHHhccCCCceEEEeeec
Q 017781 58 KIDMNTTVLG-----FKISMPIMIAPTAMQKMAHPEGEYATARAASAAGTIMTLSSWSTSSVEEVASTGPGIRFFQLYVY 132 (366)
Q Consensus 58 ~vd~st~l~g-----~~l~~Pi~iApm~~~~l~~~~~e~~la~aa~~~G~~~~vs~~~~~~~e~i~~~~~~~~~~Qly~~ 132 (366)
.++.++++.+ ..+..||+++||+++++ ..+...+++.++++.|....+++.. .+.+++.... ....|+- .
T Consensus 59 ~~~~~~~~g~~~~~~~~i~~Pi~~~~Ms~Gs~-s~~a~~aLa~aa~~aG~~~~~Gegg-~~~~~~~~~~--~~i~q~~-~ 133 (392)
T cd02808 59 EVDDRVTIGPNAEKPLKLDSPFNISAMSFGAL-SKEAKEALAIGAALAGTASNTGEGG-ELPEEREGGG--DIIKQVA-S 133 (392)
T ss_pred ccccceeeccccCCccccccceEecCCCCCcc-cHHHHHHHHHHHHhcCCceeecCCC-CCHHHHhhhh--heEEEec-C
Confidence 3445666654 35679999999997765 3445679999999999999998754 5566665332 2344542 1
Q ss_pred CCHHHHHHHHHHHHHcCCCEEEEecCC---CCCcchhHHHhhhcCCCC-ccccccccccccCCCccc-cchhhHHHhhhc
Q 017781 133 KDRNVVAQLVRRAERAGFKAIALTVDT---PRLGRREADIKNRFTLPP-FLTLKNFQGLDLGKMDEA-NDSGLAAYVAGQ 207 (366)
Q Consensus 133 ~d~~~~~~~l~ra~~~G~~ai~vtvd~---p~~g~r~~d~~~~~~~p~-~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~ 207 (366)
.........++. ++++-+-+.. |..|. .+|. +++.. ++.. ..+..++.+++.
T Consensus 134 ~~fGv~~~~~~~-----~~~ieik~~QGAkpg~gg---------~l~~~Kv~~e---------iA~~r~~~~g~~~isp~ 190 (392)
T cd02808 134 GRFGVRPEYLNK-----ADAIEIKIGQGAKPGEGG---------HLPGEKVTEE---------IAKIRGIPPGVDLISPP 190 (392)
T ss_pred CCCccCHHHccc-----CcEEEEEeccCCCCCCCC---------ccccccCCHH---------HHHHhCCCCCccccCCC
Confidence 111121122211 4455554431 11111 0110 01100 0000 001122334444
Q ss_pred cCCCCC-----HHHHHHHHHhcC-CCEEEEeccC--HHH----H-HcCCcEEEEcCCCccC--------CCCCcchHHHH
Q 017781 208 IDRSLS-----WKDVKWLQTITK-LPILVKGVLT--AED----V-QAGAAGIIVSNHGARQ--------LDYVPATIMAL 266 (366)
Q Consensus 208 ~d~~~~-----~~~i~~lr~~~~-~pv~vK~v~~--~~d----~-~aGad~I~vs~~gg~~--------~~~~~~~~~~l 266 (366)
.++++. .+.|+++|+.++ +||++|++.+ .++ . ..|+|+|+|+|++|.+ .+++.|+...|
T Consensus 191 ~~~~~~~~~~l~~~I~~lr~~~~~~pV~vK~~~~~~~~~~a~~~~~~g~D~I~VsG~~Ggtg~~~~~~~~~~g~pt~~~L 270 (392)
T cd02808 191 PHHDIYSIEDLAQLIEDLREATGGKPIGVKLVAGHGEGDIAAGVAAAGADFITIDGAEGGTGAAPLTFIDHVGLPTELGL 270 (392)
T ss_pred CCCCCCCHHHHHHHHHHHHHhCCCceEEEEECCCCCHHHHHHHHHHcCCCEEEEeCCCCCCCCCcccccccCCccHHHHH
Confidence 455543 467999999998 9999999864 555 4 4459999999996543 35688999999
Q ss_pred HHHHHHc-----CCCceEEEecCCCCHHHHHHHHHhCcCEEEecHHHHHHhhhc--------------------------
Q 017781 267 EEVVKAT-----QGRIPVFLDGGVRRGTDVFKALALGASGIFIGRPVVYSLAAE-------------------------- 315 (366)
Q Consensus 267 ~~i~~~~-----~~~i~vi~~GGI~~~~dv~kalalGAd~V~igr~~l~~l~~~-------------------------- 315 (366)
.++++++ ++++|||++|||+++.|++|+|++|||+|++||+||+++.|.
T Consensus 271 ~~v~~~~~~~~~~~~i~viasGGI~~g~Dv~kalaLGAd~V~ig~~~l~al~c~~~~~c~~~~cP~Giat~~~~~~~~~~ 350 (392)
T cd02808 271 ARAHQALVKNGLRDRVSLIASGGLRTGADVAKALALGADAVGIGTAALIALGCIQARKCHTNTCPVGVATQDPELRRRLD 350 (392)
T ss_pred HHHHHHHHHcCCCCCCeEEEECCCCCHHHHHHHHHcCCCeeeechHHHHhcchHHHHhcCCCCCCcccccCChHhhhhcC
Confidence 9998765 347999999999999999999999999999999999988654
Q ss_pred ---CHHHHHHHHHHHHHHHHHHHHHcCCCChhhhccccee
Q 017781 316 ---GEKGVRRVLEMLREEFELAMALSGCRSLKEITRDHIV 352 (366)
Q Consensus 316 ---G~~gv~~~~~~l~~el~~~m~~~G~~~l~el~~~~l~ 352 (366)
|+++|.++++.+.+||+.+|..+|++++++++++++.
T Consensus 351 ~~~~~~~v~~~~~~~~~el~~~m~~~G~~~~~~l~~~~l~ 390 (392)
T cd02808 351 VEGKAERVANYLKSLAEELRELAAALGKRSLELLGRSDLL 390 (392)
T ss_pred CchHHHHHHHHHHHHHHHHHHHHHHhCCCChHHCCHHHhh
Confidence 7889999999999999999999999999999988764
|
GltS is a complex iron-sulfur flavoprotein that catalyzes the reductive synthesis of L-glutamate from 2-oxoglutarate and L-glutamine via intramolecular channelling of ammonia, a reaction in the plant, yeast and bacterial pathway for ammonia assimilation. It is a multifunctional enzyme that functions through three distinct active centers, carrying out L-glutamine hydrolysis, conversion of 2-oxoglutarate into L-glutamate, and electron uptake from an electron donor. |
| >PRK08649 inosine 5-monophosphate dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=99.94 E-value=1.2e-25 Score=220.46 Aligned_cols=285 Identities=21% Similarity=0.274 Sum_probs=186.2
Q ss_pred cccceeeeccccC--CCCCCccceeEcCcccCCceEecccccccccCChhhHHHHHHHHHcCCceecCC-C---CCCCHH
Q 017781 42 AFSRILFRPRILI--DVSKIDMNTTVLGFKISMPIMIAPTAMQKMAHPEGEYATARAASAAGTIMTLSS-W---STSSVE 115 (366)
Q Consensus 42 ~f~~i~l~pr~l~--~~~~vd~st~l~g~~l~~Pi~iApm~~~~l~~~~~e~~la~aa~~~G~~~~vs~-~---~~~~~e 115 (366)
.||++.|+|. ++ +.++|||++.+.+..+..||+++||.+.+ +..++.+++++|...+++. . ...+.+
T Consensus 17 ~fddV~lvp~-~~~~~~~dvdls~~~~~~~i~~Piv~a~M~gVt------~~~la~avs~~GglGvl~~~gl~~~~~~~e 89 (368)
T PRK08649 17 GLDEIAIVPS-RRTRDPEDVSTSWQIDAYRFEIPIIASPMDAVV------SPETAIELGKLGGLGVLNLEGLWTRYEDPE 89 (368)
T ss_pred CcceEEEeCC-CCCCCHHHceeeeeecceeccCcEeccCCcccC------CHHHHHHHHhCCCceEEeeccccccCCCHH
Confidence 6999999999 54 56899999999999999999999997654 7799999999999777762 1 223445
Q ss_pred HHhc----cCCC---ceEEEee-ecCCHHHHHHHHHHHHHcCCCEEEEecCCCCCcchhHHHhhhcCCCCcccccccccc
Q 017781 116 EVAS----TGPG---IRFFQLY-VYKDRNVVAQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLTLKNFQGL 187 (366)
Q Consensus 116 ~i~~----~~~~---~~~~Qly-~~~d~~~~~~~l~ra~~~G~~ai~vtvd~p~~g~r~~d~~~~~~~p~~~~~~~~~~~ 187 (366)
++.+ ..+. ...-+++ .+.+++.+.++++.+++++... -+.++....-.+.+-+. . .++..-.++
T Consensus 90 ~l~~qi~~~~~~~~~~~~~~~~~~P~~p~l~~~iv~~~~~~~V~v-~vr~~~~~~~e~a~~l~-e----aGvd~I~vh-- 161 (368)
T PRK08649 90 PILDEIASLGKDEATRLMQELYAEPIKPELITERIAEIRDAGVIV-AVSLSPQRAQELAPTVV-E----AGVDLFVIQ-- 161 (368)
T ss_pred HHHHHHHhcCcHHHHHHHHHhhcCCCCHHHHHHHHHHHHhCeEEE-EEecCCcCHHHHHHHHH-H----CCCCEEEEe--
Confidence 4432 1110 0001111 1346677777777777754211 11121100000100000 0 000000000
Q ss_pred ccCCCccccchhhHHHhhhccCCCCCHHHHHHHHHhcCCCEEEEeccCHHH----HHcCCcEEEEcCCCcc------CCC
Q 017781 188 DLGKMDEANDSGLAAYVAGQIDRSLSWKDVKWLQTITKLPILVKGVLTAED----VQAGAAGIIVSNHGAR------QLD 257 (366)
Q Consensus 188 ~~~~~~~~~~~~~~~~~~~~~d~~~~~~~i~~lr~~~~~pv~vK~v~~~~d----~~aGad~I~vs~~gg~------~~~ 257 (366)
.+. ..+.|.. ..-.|..+.++++..++||+++.+.+.++ .++|||+|.+..++|+ ...
T Consensus 162 -------grt-~~~~h~~----~~~~~~~i~~~ik~~~ipVIaG~V~t~e~A~~l~~aGAD~V~VG~G~Gs~~~t~~~~g 229 (368)
T PRK08649 162 -------GTV-VSAEHVS----KEGEPLNLKEFIYELDVPVIVGGCVTYTTALHLMRTGAAGVLVGIGPGAACTSRGVLG 229 (368)
T ss_pred -------ccc-hhhhccC----CcCCHHHHHHHHHHCCCCEEEeCCCCHHHHHHHHHcCCCEEEECCCCCcCCCCcccCC
Confidence 000 0011111 11257777777777899999988999887 8899999998754442 123
Q ss_pred CCcchHHHHHHHHHHcC--------CCceEEEecCCCCHHHHHHHHHhCcCEEEecHHHHHHhhhcCH------------
Q 017781 258 YVPATIMALEEVVKATQ--------GRIPVFLDGGVRRGTDVFKALALGASGIFIGRPVVYSLAAEGE------------ 317 (366)
Q Consensus 258 ~~~~~~~~l~~i~~~~~--------~~i~vi~~GGI~~~~dv~kalalGAd~V~igr~~l~~l~~~G~------------ 317 (366)
.+.|.+.++.+++++.. .++|||++|||+++.|++|||++|||+||+|++|+....+.|.
T Consensus 230 ~g~p~~~ai~~~~~a~~~~l~~~~~~~vpVIAdGGI~~~~diakAlalGAd~Vm~Gs~fa~t~Espg~~~~~gm~s~~~~ 309 (368)
T PRK08649 230 IGVPMATAIADVAAARRDYLDETGGRYVHVIADGGIGTSGDIAKAIACGADAVMLGSPLARAAEAPGRGWHWGMAAPHPS 309 (368)
T ss_pred CCcCHHHHHHHHHHHHHHhhhhhcCCCCeEEEeCCCCCHHHHHHHHHcCCCeecccchhcccccCCCcccccCcccCCCc
Confidence 46788888888875421 1599999999999999999999999999999999654322111
Q ss_pred ------------HHHHHHHH----------HHHHHHHHHHHHcCCCChhhhcccceee
Q 017781 318 ------------KGVRRVLE----------MLREEFELAMALSGCRSLKEITRDHIVT 353 (366)
Q Consensus 318 ------------~gv~~~~~----------~l~~el~~~m~~~G~~~l~el~~~~l~~ 353 (366)
..+++++. .+...|++.|.++|+.+++||++..++.
T Consensus 310 ~~eg~~~~~~~~g~~~~~~~~~~~~~~~~~~~~g~l~~~m~~~g~~~~~~~~~~~~~~ 367 (368)
T PRK08649 310 LPRGTRIKVGTTGSLEQILFGPSHLPDGTHNLVGALRRSMATLGYSDLKEFQKVEVVV 367 (368)
T ss_pred CCCceEEeCCCcCcHHHHhcCcccccchHHHHHHHHHHHHHhcCCCcHHHHhhcCeEe
Confidence 13778877 9999999999999999999999876643
|
|
| >TIGR01304 IMP_DH_rel_2 IMP dehydrogenase family protein | Back alignment and domain information |
|---|
Probab=99.94 E-value=2.6e-25 Score=217.62 Aligned_cols=285 Identities=21% Similarity=0.280 Sum_probs=184.2
Q ss_pred cccceeeecc-ccCCCCCCccceeEcCcccCCceEecccccccccCChhhHHHHHHHHHcCCceecCCC----CCCCHHH
Q 017781 42 AFSRILFRPR-ILIDVSKIDMNTTVLGFKISMPIMIAPTAMQKMAHPEGEYATARAASAAGTIMTLSSW----STSSVEE 116 (366)
Q Consensus 42 ~f~~i~l~pr-~l~~~~~vd~st~l~g~~l~~Pi~iApm~~~~l~~~~~e~~la~aa~~~G~~~~vs~~----~~~~~e~ 116 (366)
.||+|.|+|. .-++.+++||++.+.+.++..||++|||++.+ +.+++..++++|...+++.. .+...+.
T Consensus 14 ~~d~i~~vp~~~t~~~~~v~~~~~i~~~~l~~PivlAPMagVt------d~~fr~~~~~~Galgvvsaegl~~~~~~~~~ 87 (369)
T TIGR01304 14 SLDDISVVPSRRTRSSKDVDTAWQIDAYRFELPFIAHPMDALV------SPEFAIELGELGGLGVLNLEGLWGRHEDPDP 87 (369)
T ss_pred CcceEEEcCCCCCCChhhccceeEEcceecCCceeecCCCccc------CHHHHHHHHHcCCcccccchHHHhcCCCHHH
Confidence 7999999996 55788999999999999999999999998765 78999999999997677531 1222222
Q ss_pred Hh----ccCCC-------ceEEEeee-cCCHHHHHHHHHHHHHcCCCEEEEecCCCCCcchhHHHhhhcCCCCccccccc
Q 017781 117 VA----STGPG-------IRFFQLYV-YKDRNVVAQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLTLKNF 184 (366)
Q Consensus 117 i~----~~~~~-------~~~~Qly~-~~d~~~~~~~l~ra~~~G~~ai~vtvd~p~~g~r~~d~~~~~~~p~~~~~~~~ 184 (366)
+. ...+. ....++|. +.+++.+.++++.+++++.. +-+.++ |. ...++.... +..+..+
T Consensus 88 ~~~QI~g~~~~~~~a~aa~~~~e~~~~~~~p~l~~~ii~~vr~a~Vt-vkiRl~-~~---~~~e~a~~l-~eAGad~--- 158 (369)
T TIGR01304 88 AIAKIAEAYEEGDQAAATRLLQELHAAPLKPELLGERIAEVRDSGVI-TAVRVS-PQ---NAREIAPIV-VKAGADL--- 158 (369)
T ss_pred HHHHHhhcCCChHHHHHHHHHHHcCCCccChHHHHHHHHHHHhcceE-EEEecC-Cc---CHHHHHHHH-HHCCCCE---
Confidence 21 10000 00011111 24566666666666665521 112221 10 111111000 0000000
Q ss_pred cccccCCCccccchhhHHHhhhccCCCCCHHHHHHHHHhcCCCEEEEeccCHHH----HHcCCcEEEEcCCCccC----C
Q 017781 185 QGLDLGKMDEANDSGLAAYVAGQIDRSLSWKDVKWLQTITKLPILVKGVLTAED----VQAGAAGIIVSNHGARQ----L 256 (366)
Q Consensus 185 ~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~i~~lr~~~~~pv~vK~v~~~~d----~~aGad~I~vs~~gg~~----~ 256 (366)
+ .+. .+. ..+.+.. ..-.|..+.++++..++||+++++.+.++ .++|||+|.++.+|+.. +
T Consensus 159 --I---~ih-grt-~~q~~~s----g~~~p~~l~~~i~~~~IPVI~G~V~t~e~A~~~~~aGaDgV~~G~gg~~~~~~~l 227 (369)
T TIGR01304 159 --L---VIQ-GTL-VSAEHVS----TSGEPLNLKEFIGELDVPVIAGGVNDYTTALHLMRTGAAGVIVGPGGANTTRLVL 227 (369)
T ss_pred --E---EEe-ccc-hhhhccC----CCCCHHHHHHHHHHCCCCEEEeCCCCHHHHHHHHHcCCCEEEECCCCCccccccc
Confidence 0 000 000 0011111 12258888888888999999988889887 78999999855444432 2
Q ss_pred CCCcchHHHHHHHHHHc-------CC-CceEEEecCCCCHHHHHHHHHhCcCEEEecHHHHHHhhhcC------------
Q 017781 257 DYVPATIMALEEVVKAT-------QG-RIPVFLDGGVRRGTDVFKALALGASGIFIGRPVVYSLAAEG------------ 316 (366)
Q Consensus 257 ~~~~~~~~~l~~i~~~~-------~~-~i~vi~~GGI~~~~dv~kalalGAd~V~igr~~l~~l~~~G------------ 316 (366)
..+.++.+++.+++++. ++ .+|||++|||+++.|++|||++|||+||+|++|+.+..+.|
T Consensus 228 g~~~p~~~ai~d~~~a~~~~~~e~g~r~vpVIAdGGI~tg~di~kAlAlGAdaV~iGt~~a~a~Eapg~~~~w~~~~~~~ 307 (369)
T TIGR01304 228 GIEVPMATAIADVAAARRDYLDETGGRYVHVIADGGIETSGDLVKAIACGADAVVLGSPLARAAEAPGRGYFWPAAAAHP 307 (369)
T ss_pred CCCCCHHHHHHHHHHHHHHHHHhcCCCCceEEEeCCCCCHHHHHHHHHcCCCEeeeHHHHHhhhcCCCCCCccchhhcCc
Confidence 34577778888776542 22 49999999999999999999999999999999987543321
Q ss_pred -----------HHH----HHHHH----------HHHHHHHHHHHHHcCCCChhhhccccee
Q 017781 317 -----------EKG----VRRVL----------EMLREEFELAMALSGCRSLKEITRDHIV 352 (366)
Q Consensus 317 -----------~~g----v~~~~----------~~l~~el~~~m~~~G~~~l~el~~~~l~ 352 (366)
..| +++++ ..|...|++.|..+|+.+++|+++..+.
T Consensus 308 ~~~~~~~~~~~~~~~~~~~~~~~~gp~~~~~~~~n~~g~~~~~~~~~g~~~~~~~~~~~~~ 368 (369)
T TIGR01304 308 RLPRGVVTESGTVGEAPTLEEILHGPSTLPDGVENFEGGLKRAMAKCGYTDLKEFQKVSLT 368 (369)
T ss_pred cCCccccccccccCCCCcHHHHeeCCCCCCcchhhhHHHHHHHHHHcCchhhhhhhhccee
Confidence 112 55554 3688999999999999999999987653
|
This model represents a family of proteins, often annotated as a putative IMP dehydrogenase, related to IMP dehydrogenase and GMP reductase. Most species with a member of this family belong to the high GC Gram-positive bacteria, and these also have the IMP dehydrogenase described by TIGRFAMs equivalog model TIGR01302. |
| >cd00381 IMPDH IMPDH: The catalytic domain of the inosine monophosphate dehydrogenase | Back alignment and domain information |
|---|
Probab=99.93 E-value=2.1e-24 Score=209.56 Aligned_cols=253 Identities=24% Similarity=0.330 Sum_probs=187.9
Q ss_pred cccceeeecccc-CCCCCCccceeEcC-cccCCceEecccccccccCChhhHHHHHHHHHcCCceecCCCCCCCHHHHhc
Q 017781 42 AFSRILFRPRIL-IDVSKIDMNTTVLG-FKISMPIMIAPTAMQKMAHPEGEYATARAASAAGTIMTLSSWSTSSVEEVAS 119 (366)
Q Consensus 42 ~f~~i~l~pr~l-~~~~~vd~st~l~g-~~l~~Pi~iApm~~~~l~~~~~e~~la~aa~~~G~~~~vs~~~~~~~e~i~~ 119 (366)
.||++.|+|... .+.++||++|.|.+ ..+..||+.|||.+.+ +..++.+.+++|...++.. +.+.+++.+
T Consensus 3 ~~ddv~l~p~~~~~~~~~vdl~t~l~~~~~l~~Piv~apM~~vt------~~~ma~ava~~GglGvi~~--~~~~~~~~~ 74 (325)
T cd00381 3 TFDDVLLVPGYSTVLPSEVDLSTKLTKNITLNIPLVSAPMDTVT------ESEMAIAMARLGGIGVIHR--NMSIEEQAE 74 (325)
T ss_pred CcccEEEeCCCCCCCHHHceeeEEecCccccCCCEEecCCCcCC------cHHHHHHHHHCCCEEEEeC--CCCHHHHHH
Confidence 599999999865 46789999999988 8899999999997654 7789999999999878753 344555432
Q ss_pred c---CCCceEEEeeecCCHHHHHHHHHHHHHcCCCEEEEecCCCCCcchhHHHhhhcCCCCccccccccccccCCCcccc
Q 017781 120 T---GPGIRFFQLYVYKDRNVVAQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLTLKNFQGLDLGKMDEAN 196 (366)
Q Consensus 120 ~---~~~~~~~Qly~~~d~~~~~~~l~ra~~~G~~ai~vtvd~p~~g~r~~d~~~~~~~p~~~~~~~~~~~~~~~~~~~~ 196 (366)
. ...+..+..-.+.++ ...+.++.+.++|++.++++...
T Consensus 75 ~i~~vk~~l~v~~~~~~~~-~~~~~~~~l~eagv~~I~vd~~~------------------------------------- 116 (325)
T cd00381 75 EVRKVKGRLLVGAAVGTRE-DDKERAEALVEAGVDVIVIDSAH------------------------------------- 116 (325)
T ss_pred HHHHhccCceEEEecCCCh-hHHHHHHHHHhcCCCEEEEECCC-------------------------------------
Confidence 1 112223322222232 23456667777899988775321
Q ss_pred chhhHHHhhhccCCCCCHHHHHHHHHhcC-CCEEEEeccCHHH----HHcCCcEEEEcCCCcc------CCCCCcchHHH
Q 017781 197 DSGLAAYVAGQIDRSLSWKDVKWLQTITK-LPILVKGVLTAED----VQAGAAGIIVSNHGAR------QLDYVPATIMA 265 (366)
Q Consensus 197 ~~~~~~~~~~~~d~~~~~~~i~~lr~~~~-~pv~vK~v~~~~d----~~aGad~I~vs~~gg~------~~~~~~~~~~~ 265 (366)
+++...++.++++|+..+ +||++..+.+.++ .++|+|+|+|+..+|. ...++.+++.+
T Consensus 117 -----------G~~~~~~~~i~~ik~~~p~v~Vi~G~v~t~~~A~~l~~aGaD~I~vg~g~G~~~~t~~~~g~g~p~~~~ 185 (325)
T cd00381 117 -----------GHSVYVIEMIKFIKKKYPNVDVIAGNVVTAEAARDLIDAGADGVKVGIGPGSICTTRIVTGVGVPQATA 185 (325)
T ss_pred -----------CCcHHHHHHHHHHHHHCCCceEEECCCCCHHHHHHHHhcCCCEEEECCCCCcCcccceeCCCCCCHHHH
Confidence 011223567899999874 8888888888877 8999999999643321 23467889999
Q ss_pred HHHHHHHcCC-CceEEEecCCCCHHHHHHHHHhCcCEEEecHHHHHHhhhc-----------------------------
Q 017781 266 LEEVVKATQG-RIPVFLDGGVRRGTDVFKALALGASGIFIGRPVVYSLAAE----------------------------- 315 (366)
Q Consensus 266 l~~i~~~~~~-~i~vi~~GGI~~~~dv~kalalGAd~V~igr~~l~~l~~~----------------------------- 315 (366)
+.++.+++.. ++|||++|||+++.|++|||++|||+||+||.|+-...+.
T Consensus 186 i~~v~~~~~~~~vpVIA~GGI~~~~di~kAla~GA~~VmiGt~fa~t~Es~g~~~~~~g~~~~~~~g~~s~~~~~~~~~~ 265 (325)
T cd00381 186 VADVAAAARDYGVPVIADGGIRTSGDIVKALAAGADAVMLGSLLAGTDESPGEYIEINGKRYKEYRGMGSLGAMKKGGGD 265 (325)
T ss_pred HHHHHHHHhhcCCcEEecCCCCCHHHHHHHHHcCCCEEEecchhcccccCCCcEEEECCeeeeeEecccchhhhhcCccc
Confidence 9999887643 6999999999999999999999999999999985321110
Q ss_pred -------------C-------HHHHHHHHHHHHHHHHHHHHHcCCCChhhhcccce
Q 017781 316 -------------G-------EKGVRRVLEMLREEFELAMALSGCRSLKEITRDHI 351 (366)
Q Consensus 316 -------------G-------~~gv~~~~~~l~~el~~~m~~~G~~~l~el~~~~l 351 (366)
| ...+.+++..+...|+..|.++|+.+++||++...
T Consensus 266 ~~~~~~~~~~~~eg~~~~v~~~g~~~~~~~~~~~glr~~~~y~G~~~l~~~~~~~~ 321 (325)
T cd00381 266 RYFGEEAKKLVPEGVEGIVPYKGSVKDVLPQLVGGLRSSMGYCGAKSLKELQEKAR 321 (325)
T ss_pred cccccccccccCCceEEEEecCCcHHHHHHHHHHHHHHHHHhcCCCcHHHHHhcCe
Confidence 0 01388899999999999999999999999997643
|
IMPDH catalyzes the NAD-dependent oxidation of inosine 5'-monophosphate (IMP) to xanthosine 5' monophosphate (XMP). It is a rate-limiting step in the de novo synthesis of the guanine nucleotides. There is often a CBS domain inserted in the middle of this domain, which is proposed to play a regulatory role. IMPDH is a key enzyme in the regulation of cell proliferation and differentiation. It has been identified as an attractive target for developing chemotherapeutic agents. |
| >PF00478 IMPDH: IMP dehydrogenase / GMP reductase domain; InterPro: IPR001093 Synonym(s): Inosine-5'-monophosphate dehydrogenase, Inosinic acid dehydrogenase; Synonym(s): Guanosine 5'-monophosphate oxidoreductase This entry contains two related enzymes IMP dehydrogenase and GMP reducatase | Back alignment and domain information |
|---|
Probab=99.92 E-value=1.4e-23 Score=203.35 Aligned_cols=252 Identities=23% Similarity=0.330 Sum_probs=176.0
Q ss_pred cccceeeecccc---CCCCCCccceeE-cCcccCCceEecccccccccCChhhHHHHHHHHHcCCceecCCCCCCCHHHH
Q 017781 42 AFSRILFRPRIL---IDVSKIDMNTTV-LGFKISMPIMIAPTAMQKMAHPEGEYATARAASAAGTIMTLSSWSTSSVEEV 117 (366)
Q Consensus 42 ~f~~i~l~pr~l---~~~~~vd~st~l-~g~~l~~Pi~iApm~~~~l~~~~~e~~la~aa~~~G~~~~vs~~~~~~~e~i 117 (366)
.||++.|+|... .+..++||++.+ .+.++..||+-|||...+ |..+|.+.++.|...++.- ++++|+.
T Consensus 4 tfdDVllvP~~s~v~~s~~dv~~~~~~~~~~~l~iPivsa~MDtVt------e~~mAiama~~Gglgvih~--~~~~e~q 75 (352)
T PF00478_consen 4 TFDDVLLVPGRSTVLPSRSDVSLSTKLTRNITLKIPIVSAPMDTVT------ESEMAIAMARLGGLGVIHR--NMSIEEQ 75 (352)
T ss_dssp -GGGEEEE--SBSSTGGGGG-BEEEESSTSEEESSSEEE-SSTTTS------SHHHHHHHHHTTSEEEEES--SSCHHHH
T ss_pred ccccEEEecCCCCCCCCHhheECcccccCCEeecCceEecCccccc------hHHHHHHHHHhcCCceecC--CCCHHHH
Confidence 599999999874 455667777556 689999999999995433 7899999999999999864 3455433
Q ss_pred h-------ccCC-------CceEEEeeecCCHHHHHHHHHHHHHcCCCEEEEecCCCCCcchhHHHhhhcCCCCcccccc
Q 017781 118 A-------STGP-------GIRFFQLYVYKDRNVVAQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLTLKN 183 (366)
Q Consensus 118 ~-------~~~~-------~~~~~Qly~~~d~~~~~~~l~ra~~~G~~ai~vtvd~p~~g~r~~d~~~~~~~p~~~~~~~ 183 (366)
. +..| +...+-...+... ...+.++.+.++|++.|+|.+ .+ +
T Consensus 76 ~~~v~~vK~~~~~a~~d~~~~l~V~aavg~~~-~~~er~~~L~~agvD~ivID~--a~----------g----------- 131 (352)
T PF00478_consen 76 AEEVKKVKRYYPNASKDEKGRLLVAAAVGTRD-DDFERAEALVEAGVDVIVIDS--AH----------G----------- 131 (352)
T ss_dssp HHHHHHHHTHHTTHHBHTTSCBCEEEEEESST-CHHHHHHHHHHTT-SEEEEE---SS----------T-----------
T ss_pred HHHHhhhccccccccccccccceEEEEecCCH-HHHHHHHHHHHcCCCEEEccc--cC----------c-----------
Confidence 2 1111 1222222222221 124456666778999998743 21 1
Q ss_pred ccccccCCCccccchhhHHHhhhccCCCCCHHHHHHHHHhcC-CCEEEEeccCHHH----HHcCCcEEEEcCCCccC---
Q 017781 184 FQGLDLGKMDEANDSGLAAYVAGQIDRSLSWKDVKWLQTITK-LPILVKGVLTAED----VQAGAAGIIVSNHGARQ--- 255 (366)
Q Consensus 184 ~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~i~~lr~~~~-~pv~vK~v~~~~d----~~aGad~I~vs~~gg~~--- 255 (366)
+.....+.++++|+.++ +||+...+.|.+- .++|||+|.|.-.+|..
T Consensus 132 -------------------------~s~~~~~~ik~ik~~~~~~~viaGNV~T~e~a~~L~~aGad~vkVGiGpGsiCtT 186 (352)
T PF00478_consen 132 -------------------------HSEHVIDMIKKIKKKFPDVPVIAGNVVTYEGAKDLIDAGADAVKVGIGPGSICTT 186 (352)
T ss_dssp -------------------------TSHHHHHHHHHHHHHSTTSEEEEEEE-SHHHHHHHHHTT-SEEEESSSSSTTBHH
T ss_pred -------------------------cHHHHHHHHHHHHHhCCCceEEecccCCHHHHHHHHHcCCCEEEEeccCCccccc
Confidence 11123467899999995 9999999998875 99999999998665641
Q ss_pred ---CCCCcchHHHHHHHHHHcCC-CceEEEecCCCCHHHHHHHHHhCcCEEEecHHHH--------------------HH
Q 017781 256 ---LDYVPATIMALEEVVKATQG-RIPVFLDGGVRRGTDVFKALALGASGIFIGRPVV--------------------YS 311 (366)
Q Consensus 256 ---~~~~~~~~~~l~~i~~~~~~-~i~vi~~GGI~~~~dv~kalalGAd~V~igr~~l--------------------~~ 311 (366)
...|.|.+.++.+++++..+ .+|||+||||+++.|++|||++|||+||+|+.|- ++
T Consensus 187 r~v~GvG~PQ~tAv~~~a~~a~~~~v~iIADGGi~~sGDi~KAla~GAd~VMlG~llAgt~EsPG~~~~~~g~~~K~yrG 266 (352)
T PF00478_consen 187 REVTGVGVPQLTAVYECAEAARDYGVPIIADGGIRTSGDIVKALAAGADAVMLGSLLAGTDESPGEVIYIDGKRYKKYRG 266 (352)
T ss_dssp HHHHSBSCTHHHHHHHHHHHHHCTTSEEEEESS-SSHHHHHHHHHTT-SEEEESTTTTTBTTSSSEEEEETTEEEEEEEE
T ss_pred ccccccCCcHHHHHHHHHHHhhhccCceeecCCcCcccceeeeeeecccceeechhhccCcCCCCceEEECCeEEEEecc
Confidence 24578899999999987643 7999999999999999999999999999999871 11
Q ss_pred hhh------------------------cCH-------HHHHHHHHHHHHHHHHHHHHcCCCChhhhcccc
Q 017781 312 LAA------------------------EGE-------KGVRRVLEMLREEFELAMALSGCRSLKEITRDH 350 (366)
Q Consensus 312 l~~------------------------~G~-------~gv~~~~~~l~~el~~~m~~~G~~~l~el~~~~ 350 (366)
++. +|- ..+.+++..|...|+..|.++|..+|.||+...
T Consensus 267 MgS~~A~~~~~~~~~ry~~~~~~~~v~eGve~~vp~~G~v~~~l~~l~gglrs~m~y~Ga~~i~el~~~~ 336 (352)
T PF00478_consen 267 MGSLGAMKKRRGSGDRYFQAEDKKFVPEGVEGLVPYKGSVSDILPQLVGGLRSGMGYVGARSIKELRKKA 336 (352)
T ss_dssp TTSHHHHHHHSTTGCTCTSSTSSTSSSSBEEEEEE-BB-HHHHHHHHHHHHHHHHHHTTSSBHHHHHHHH
T ss_pred cccHHHHhhccccchhccccccccccccceeecCCCCCCHHHHHHHHHHHHHHHHHhcCcccHHHHHhCC
Confidence 110 011 138899999999999999999999999999763
|
These enzymes adopt a TIM barrel structure. IMP dehydrogenase (1.1.1.205 from EC) (IMPDH) catalyzes the rate-limiting reaction of de novo GTP biosynthesis, the NAD-dependent reduction of IMP into XMP []. |
| >PRK06843 inosine 5-monophosphate dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=99.92 E-value=3.6e-23 Score=203.98 Aligned_cols=252 Identities=20% Similarity=0.282 Sum_probs=180.6
Q ss_pred hcccceeeecccc-CCCCCCccceeEc-CcccCCceEecccccccccCChhhHHHHHHHHHcCCceecCCCCCCCHHHHh
Q 017781 41 NAFSRILFRPRIL-IDVSKIDMNTTVL-GFKISMPIMIAPTAMQKMAHPEGEYATARAASAAGTIMTLSSWSTSSVEEVA 118 (366)
Q Consensus 41 ~~f~~i~l~pr~l-~~~~~vd~st~l~-g~~l~~Pi~iApm~~~~l~~~~~e~~la~aa~~~G~~~~vs~~~~~~~e~i~ 118 (366)
-.||++.|+|... ...+++|++|.+. ...+..||+.|||...+ +..+|.+.+++|...+++. +.++|++.
T Consensus 10 ltfdDvll~P~~s~~~~~~vdl~t~lt~~l~l~iPIvsApMd~Vt------~~~lA~AvA~aGGlGvI~~--~~~~e~l~ 81 (404)
T PRK06843 10 LTFDDVSLIPRKSSVLPSEVSLKTQLTKNISLNIPFLSSAMDTVT------ESQMAIAIAKEGGIGIIHK--NMSIEAQR 81 (404)
T ss_pred cCccceEEccCCCccCHHhccccchhhhccCCCCCEecCCCCCCC------CHHHHHHHHHCCCEEEecC--CCCHHHHH
Confidence 3699999999865 3567899999885 57789999999997543 6789999999999999873 45666543
Q ss_pred ccC------C--CceE------------------E------------------------Eee----ecCCHHHHHHHHHH
Q 017781 119 STG------P--GIRF------------------F------------------------QLY----VYKDRNVVAQLVRR 144 (366)
Q Consensus 119 ~~~------~--~~~~------------------~------------------------Qly----~~~d~~~~~~~l~r 144 (366)
+.. . .+.. + ||. .+..++ +.+.++.
T Consensus 82 ~eI~~vk~~~~~~~i~~~~d~~~~~~~~~t~~~~~~~~~~~~d~~~~~~~~~a~~d~~~~l~v~aavg~~~~-~~~~v~~ 160 (404)
T PRK06843 82 KEIEKVKTYKFQKTINTNGDTNEQKPEIFTAKQHLEKSDAYKNAEHKEDFPNACKDLNNKLRVGAAVSIDID-TIERVEE 160 (404)
T ss_pred HHHHHHHhhcCCCceeecccccccchhheeccccchHHHHHhhhhhhhhcchhhhhhhcCeEEEEEEeCCHH-HHHHHHH
Confidence 210 0 0000 0 010 011122 3344555
Q ss_pred HHHcCCCEEEEecCCCCCcchhHHHhhhcCCCCccccccccccccCCCccccchhhHHHhhhccCCCCCHHHHHHHHHhc
Q 017781 145 AERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLTLKNFQGLDLGKMDEANDSGLAAYVAGQIDRSLSWKDVKWLQTIT 224 (366)
Q Consensus 145 a~~~G~~ai~vtvd~p~~g~r~~d~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~i~~lr~~~ 224 (366)
+.++|++.|+| |+.. +++...++.++++|+.+
T Consensus 161 lv~aGvDvI~i--D~a~----------------------------------------------g~~~~~~~~v~~ik~~~ 192 (404)
T PRK06843 161 LVKAHVDILVI--DSAH----------------------------------------------GHSTRIIELVKKIKTKY 192 (404)
T ss_pred HHhcCCCEEEE--ECCC----------------------------------------------CCChhHHHHHHHHHhhC
Confidence 55566666655 2210 12223457799999998
Q ss_pred -CCCEEEEeccCHHH----HHcCCcEEEEcCCCc-----cCC-CCCcchHHHHHHHHHHcC-CCceEEEecCCCCHHHHH
Q 017781 225 -KLPILVKGVLTAED----VQAGAAGIIVSNHGA-----RQL-DYVPATIMALEEVVKATQ-GRIPVFLDGGVRRGTDVF 292 (366)
Q Consensus 225 -~~pv~vK~v~~~~d----~~aGad~I~vs~~gg-----~~~-~~~~~~~~~l~~i~~~~~-~~i~vi~~GGI~~~~dv~ 292 (366)
+.+|+++++.|.++ .++|+|+|.++...| +.. ..+.|.++++.++.+.+. ..+|||++|||+++.|++
T Consensus 193 p~~~vi~g~V~T~e~a~~l~~aGaD~I~vG~g~Gs~c~tr~~~g~g~p~ltai~~v~~~~~~~~vpVIAdGGI~~~~Di~ 272 (404)
T PRK06843 193 PNLDLIAGNIVTKEAALDLISVGADCLKVGIGPGSICTTRIVAGVGVPQITAICDVYEVCKNTNICIIADGGIRFSGDVV 272 (404)
T ss_pred CCCcEEEEecCCHHHHHHHHHcCCCEEEECCCCCcCCcceeecCCCCChHHHHHHHHHHHhhcCCeEEEeCCCCCHHHHH
Confidence 68999999999988 899999999864333 333 346788888877776653 269999999999999999
Q ss_pred HHHHhCcCEEEecHHHHH--------------------Hhhh-----cC-----------------HH----------HH
Q 017781 293 KALALGASGIFIGRPVVY--------------------SLAA-----EG-----------------EK----------GV 320 (366)
Q Consensus 293 kalalGAd~V~igr~~l~--------------------~l~~-----~G-----------------~~----------gv 320 (366)
|||++||++||+|++|.- +++. .| ++ .+
T Consensus 273 KALalGA~aVmvGs~~agt~Espg~~~~~~g~~~K~yrGmgS~~Am~~~~~~ry~~~~~~~~~~~v~eGveg~v~~~G~v 352 (404)
T PRK06843 273 KAIAAGADSVMIGNLFAGTKESPSEEIIYNGKKFKSYVGMGSISAMKRGSKSRYFQLENNEPKKLVPEGIEGMVPYSGKL 352 (404)
T ss_pred HHHHcCCCEEEEcceeeeeecCCCcEEEECCEEEEEEeccchHHHHhccccccccccccccccccCCCccEEEecCCCCH
Confidence 999999999999999832 1110 00 01 17
Q ss_pred HHHHHHHHHHHHHHHHHcCCCChhhhccc
Q 017781 321 RRVLEMLREEFELAMALSGCRSLKEITRD 349 (366)
Q Consensus 321 ~~~~~~l~~el~~~m~~~G~~~l~el~~~ 349 (366)
.+++..|...|+..|.++|+.++.||+..
T Consensus 353 ~~~~~~l~gglrs~m~y~Ga~~i~el~~~ 381 (404)
T PRK06843 353 KDILTQLKGGLMSGMGYLGAATISDLKIN 381 (404)
T ss_pred HHHHHHHHHHHHHHhhccCCCcHHHHHhc
Confidence 88999999999999999999999999854
|
|
| >PRK05096 guanosine 5'-monophosphate oxidoreductase; Provisional | Back alignment and domain information |
|---|
Probab=99.91 E-value=7.3e-23 Score=194.95 Aligned_cols=252 Identities=20% Similarity=0.232 Sum_probs=183.1
Q ss_pred hcccceeeeccccC--CCCCCccceeEc-----CcccCCceEecccccccccCChhhHHHHHHHHHcCCceecCCCCCCC
Q 017781 41 NAFSRILFRPRILI--DVSKIDMNTTVL-----GFKISMPIMIAPTAMQKMAHPEGEYATARAASAAGTIMTLSSWSTSS 113 (366)
Q Consensus 41 ~~f~~i~l~pr~l~--~~~~vd~st~l~-----g~~l~~Pi~iApm~~~~l~~~~~e~~la~aa~~~G~~~~vs~~~~~~ 113 (366)
-.|||+.|+|+... +-++|||+.+|. ...+..|++-|+|--. ++.++|.+.++.|...+++- +.+
T Consensus 9 l~f~DVll~P~~s~v~sRsevdl~~~~~~~~~~~~~~giPii~AnMdTV------~~~~mA~~la~~g~~~~iHk--~~~ 80 (346)
T PRK05096 9 LGFKDVLIRPKRSTLKSRSDVELERQFTFKHSGQSWSGVPIIAANMDTV------GTFEMAKALASFDILTAVHK--HYS 80 (346)
T ss_pred CCceeEEEecCcCccccHHHceecceeeeecccccccCCceEecCCCcc------ccHHHHHHHHHCCCeEEEec--CCC
Confidence 46999999998543 447999988775 4557799999999533 48899999999999999964 355
Q ss_pred HHHHhc----cCCCc-eEEEeeecCCHHHHHHHHHHHHH--cCCCEEEEecCCCCCcchhHHHhhhcCCCCccccccccc
Q 017781 114 VEEVAS----TGPGI-RFFQLYVYKDRNVVAQLVRRAER--AGFKAIALTVDTPRLGRREADIKNRFTLPPFLTLKNFQG 186 (366)
Q Consensus 114 ~e~i~~----~~~~~-~~~Qly~~~d~~~~~~~l~ra~~--~G~~ai~vtvd~p~~g~r~~d~~~~~~~p~~~~~~~~~~ 186 (366)
+|+.++ ..+.. ...-+..+-.++. .+.++.+.+ +|++.|+|++ . +|
T Consensus 81 ~e~~~~fv~~~~~~~~~~~~vavG~~~~d-~er~~~L~~~~~g~D~iviD~--A----------hG-------------- 133 (346)
T PRK05096 81 VEEWAAFVNNSSADVLKHVMVSTGTSDAD-FEKTKQILALSPALNFICIDV--A----------NG-------------- 133 (346)
T ss_pred HHHHHHHHHhccccccceEEEEecCCHHH-HHHHHHHHhcCCCCCEEEEEC--C----------CC--------------
Confidence 665432 22111 1111222333332 344444444 5888887743 2 11
Q ss_pred cccCCCccccchhhHHHhhhccCCCCCHHHHHHHHHhc-CCCEEEEeccCHHH----HHcCCcEEEEcCCCcc----C--
Q 017781 187 LDLGKMDEANDSGLAAYVAGQIDRSLSWKDVKWLQTIT-KLPILVKGVLTAED----VQAGAAGIIVSNHGAR----Q-- 255 (366)
Q Consensus 187 ~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~i~~lr~~~-~~pv~vK~v~~~~d----~~aGad~I~vs~~gg~----~-- 255 (366)
+.....+.|+++|+.+ +.+|+...+.|.+- .++|||+|.|.-..|. +
T Consensus 134 ----------------------hs~~~i~~ik~ik~~~P~~~vIaGNV~T~e~a~~Li~aGAD~vKVGIGpGSiCtTr~v 191 (346)
T PRK05096 134 ----------------------YSEHFVQFVAKAREAWPDKTICAGNVVTGEMVEELILSGADIVKVGIGPGSVCTTRVK 191 (346)
T ss_pred ----------------------cHHHHHHHHHHHHHhCCCCcEEEecccCHHHHHHHHHcCCCEEEEcccCCccccCccc
Confidence 1123457899999998 68899988988875 9999999999765553 1
Q ss_pred CCCCcchHHHHHHHHHHcCC-CceEEEecCCCCHHHHHHHHHhCcCEEEecHHHH--------------------HHhhh
Q 017781 256 LDYVPATIMALEEVVKATQG-RIPVFLDGGVRRGTDVFKALALGASGIFIGRPVV--------------------YSLAA 314 (366)
Q Consensus 256 ~~~~~~~~~~l~~i~~~~~~-~i~vi~~GGI~~~~dv~kalalGAd~V~igr~~l--------------------~~l~~ 314 (366)
...|.|.+.++.+++++... .+|||+||||++..|++|||++|||+||+|+.|- ++++.
T Consensus 192 tGvG~PQltAV~~~a~~a~~~gvpiIADGGi~~sGDI~KAlaaGAd~VMlGsllAGt~EsPGe~~~~~G~~~K~yrGMgS 271 (346)
T PRK05096 192 TGVGYPQLSAVIECADAAHGLGGQIVSDGGCTVPGDVAKAFGGGADFVMLGGMLAGHEESGGEIVEENGEKFMLFYGMSS 271 (346)
T ss_pred cccChhHHHHHHHHHHHHHHcCCCEEecCCcccccHHHHHHHcCCCEEEeChhhcCcccCCCcEEEECCEEEEEEecccc
Confidence 23467899999999887543 6899999999999999999999999999999872 22211
Q ss_pred c-------C-------HH----------HHHHHHHHHHHHHHHHHHHcCCCChhhhccc
Q 017781 315 E-------G-------EK----------GVRRVLEMLREEFELAMALSGCRSLKEITRD 349 (366)
Q Consensus 315 ~-------G-------~~----------gv~~~~~~l~~el~~~m~~~G~~~l~el~~~ 349 (366)
. | +| .+.+++..+...|+..|.++|..++.||++.
T Consensus 272 ~~Am~~~~g~~~ry~~~EG~~~~Vp~kG~v~~~i~~l~gGlrs~m~Y~Ga~~i~el~~~ 330 (346)
T PRK05096 272 ESAMKRHVGGVAEYRAAEGKTVKLPLRGPVENTARDILGGLRSACTYVGASRLKELTKR 330 (346)
T ss_pred HHHHhhccCcccccccccCceEEeccCCcHHHHHHHHHHHHHHHHcccCcCcHHHHHhC
Confidence 0 0 11 2888999999999999999999999999654
|
|
| >TIGR01037 pyrD_sub1_fam dihydroorotate dehydrogenase (subfamily 1) family protein | Back alignment and domain information |
|---|
Probab=99.91 E-value=1.4e-22 Score=194.94 Aligned_cols=234 Identities=23% Similarity=0.316 Sum_probs=171.4
Q ss_pred cceeEcCcccCCceEecccccccccCChhhHHHHHHHHHcCCceecC-CCC--------------------------CCC
Q 017781 61 MNTTVLGFKISMPIMIAPTAMQKMAHPEGEYATARAASAAGTIMTLS-SWS--------------------------TSS 113 (366)
Q Consensus 61 ~st~l~g~~l~~Pi~iApm~~~~l~~~~~e~~la~aa~~~G~~~~vs-~~~--------------------------~~~ 113 (366)
++|+++|.++.+||++||...+ .+....+.+.+.|..+++. |.. +..
T Consensus 1 l~~~~~g~~l~npi~~aag~~~------~~~~~~~~~~~~G~g~iv~kt~~~~~~~gn~~pr~~~~~~~~~n~~gl~~~g 74 (300)
T TIGR01037 1 LEVELFGIRFKNPLILASGIMG------SGVESLRRIDRSGAGAVVTKSIGLEPRPGYRNPTIVETPCGMLNAIGLQNPG 74 (300)
T ss_pred CcEEECCEECCCCCEeCCcCCC------CCHHHHHHHHHcCCcEEEeCccccccccCCCCCeEEecccHHhhhccCCCcC
Confidence 4789999999999999994221 1334455566668887765 111 112
Q ss_pred HHH----Hhc---cCCCceEEEeeecCCHHHHHHHHHHHHHcC--CCEEEEecCCCCCcchhHHHhhhcCCCCccccccc
Q 017781 114 VEE----VAS---TGPGIRFFQLYVYKDRNVVAQLVRRAERAG--FKAIALTVDTPRLGRREADIKNRFTLPPFLTLKNF 184 (366)
Q Consensus 114 ~e~----i~~---~~~~~~~~Qly~~~d~~~~~~~l~ra~~~G--~~ai~vtvd~p~~g~r~~d~~~~~~~p~~~~~~~~ 184 (366)
.+. +.+ ..+.|.++|++ ..+.+.+.+.++.+++++ ++++.+|+.||... +..
T Consensus 75 ~~~~~~~~~~~~~~~~~pl~~qi~-g~~~~~~~~~a~~~~~~~~~~d~ielN~~cP~~~--------~~g---------- 135 (300)
T TIGR01037 75 VEAFLEELKPVREEFPTPLIASVY-GSSVEEFAEVAEKLEKAPPYVDAYELNLSCPHVK--------GGG---------- 135 (300)
T ss_pred HHHHHHHHHHHhccCCCcEEEEee-cCCHHHHHHHHHHHHhccCccCEEEEECCCCCCC--------CCc----------
Confidence 222 111 11247899997 567888888888888763 99999999999641 100
Q ss_pred cccccCCCccccchhhHHHhhhccCCCCCHHHHHHHHHhcCCCEEEEeccCHHH--------HHcCCcEEEEcCCC-ccC
Q 017781 185 QGLDLGKMDEANDSGLAAYVAGQIDRSLSWKDVKWLQTITKLPILVKGVLTAED--------VQAGAAGIIVSNHG-ARQ 255 (366)
Q Consensus 185 ~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~i~~lr~~~~~pv~vK~v~~~~d--------~~aGad~I~vs~~g-g~~ 255 (366)
..+. .++.+..+.++++|+.+++||++|...+.++ .++|+|+|+++|+- |+.
T Consensus 136 -----------------~~l~--~~~~~~~eiv~~vr~~~~~pv~vKi~~~~~~~~~~a~~l~~~G~d~i~v~nt~~~~~ 196 (300)
T TIGR01037 136 -----------------IAIG--QDPELSADVVKAVKDKTDVPVFAKLSPNVTDITEIAKAAEEAGADGLTLINTLRGMK 196 (300)
T ss_pred -----------------cccc--cCHHHHHHHHHHHHHhcCCCEEEECCCChhhHHHHHHHHHHcCCCEEEEEccCCccc
Confidence 0001 2445667889999999999999998866544 78999999998752 211
Q ss_pred CC---------------CCcc----hHHHHHHHHHHcCCCceEEEecCCCCHHHHHHHHHhCcCEEEecHHHHHHhhhcC
Q 017781 256 LD---------------YVPA----TIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFIGRPVVYSLAAEG 316 (366)
Q Consensus 256 ~~---------------~~~~----~~~~l~~i~~~~~~~i~vi~~GGI~~~~dv~kalalGAd~V~igr~~l~~l~~~G 316 (366)
.+ .+++ .++.+.++++.+ ++|||++|||++++|+.++|..|||+|++||++++. +
T Consensus 197 ~~~~~~~~~~~~~~gg~sg~~~~~~~l~~v~~i~~~~--~ipvi~~GGI~s~~da~~~l~~GAd~V~igr~~l~~----p 270 (300)
T TIGR01037 197 IDIKTGKPILANKTGGLSGPAIKPIALRMVYDVYKMV--DIPIIGVGGITSFEDALEFLMAGASAVQVGTAVYYR----G 270 (300)
T ss_pred cccccCceeeCCCCccccchhhhHHHHHHHHHHHhcC--CCCEEEECCCCCHHHHHHHHHcCCCceeecHHHhcC----c
Confidence 10 1222 246777787777 699999999999999999999999999999999863 2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHcCCCChhhhccc
Q 017781 317 EKGVRRVLEMLREEFELAMALSGCRSLKEITRD 349 (366)
Q Consensus 317 ~~gv~~~~~~l~~el~~~m~~~G~~~l~el~~~ 349 (366)
.+++.++++|+.+|+..|+++++|+++.
T Consensus 271 -----~~~~~i~~~l~~~~~~~g~~~~~e~~g~ 298 (300)
T TIGR01037 271 -----FAFKKIIEGLIAFLKAEGFTSIEELIGI 298 (300)
T ss_pred -----hHHHHHHHHHHHHHHHcCCCCHHHHhCc
Confidence 4778999999999999999999999864
|
This family includes subfamily 1 dihydroorotate dehydrogenases while excluding the closely related subfamily 2 (TIGR01036). This family also includes a number of uncharacterized proteins and a domain of dihydropyrimidine dehydrogenase. The uncharacterized proteins might all be dihydroorotate dehydrogenase. |
| >cd04739 DHOD_like Dihydroorotate dehydrogenase (DHOD) like proteins | Back alignment and domain information |
|---|
Probab=99.90 E-value=1.2e-21 Score=190.57 Aligned_cols=235 Identities=19% Similarity=0.225 Sum_probs=166.7
Q ss_pred ccceeEcCcccCCceEecccccccccCChhhHHHHHHHHHcCCceecC-CCCCC--------------------------
Q 017781 60 DMNTTVLGFKISMPIMIAPTAMQKMAHPEGEYATARAASAAGTIMTLS-SWSTS-------------------------- 112 (366)
Q Consensus 60 d~st~l~g~~l~~Pi~iApm~~~~l~~~~~e~~la~aa~~~G~~~~vs-~~~~~-------------------------- 112 (366)
|++|+++|++|.+||++|.-+. +.+.+..+.+...|+++++. |....
T Consensus 1 dL~v~~~Gl~l~nPv~~ASg~~------~~~~e~~~~~~~~G~Gavv~ktit~~~~~~~gn~~pr~~~~~~~~~~~~~~i 74 (325)
T cd04739 1 DLSTTYLGLSLKNPLVASASPL------SRNLDNIRRLEDAGAGAIVLPSLFEEQIEREAQELDRFLTYGSSFAEALSYF 74 (325)
T ss_pred CceEEECCEecCCCCEeCCcCC------CCCHHHHHHHHHCCCcEEEecccchhhhhhcCCCCCceEeecccCcCccccc
Confidence 6899999999999999976332 23555666688888887752 21100
Q ss_pred --------CHH----HHhcc---CCCceEEEeeecCCHHHHHHHHHHHHHcCCCEEEEecCCCCCcchhHHHhhhcCCCC
Q 017781 113 --------SVE----EVAST---GPGIRFFQLYVYKDRNVVAQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFTLPP 177 (366)
Q Consensus 113 --------~~e----~i~~~---~~~~~~~Qly~~~d~~~~~~~l~ra~~~G~~ai~vtvd~p~~g~r~~d~~~~~~~p~ 177 (366)
.++ ++.+. ...|.+.|+. ..+.+...+.+++++++|++++.+|+.||... |
T Consensus 75 n~~g~~n~g~~~~~~~i~~~~~~~~~pvi~si~-g~~~~~~~~~a~~~~~~gad~iElN~s~~~~~------------~- 140 (325)
T cd04739 75 PEYGRYNLGPEEYLELIRRAKRAVSIPVIASLN-GVSAGGWVDYARQIEEAGADALELNIYALPTD------------P- 140 (325)
T ss_pred ccccccCcCHHHHHHHHHHHHhccCCeEEEEeC-CCCHHHHHHHHHHHHhcCCCEEEEeCCCCCCC------------C-
Confidence 011 11111 1246677875 35667677888888888889998888874210 0
Q ss_pred ccccccccccccCCCccccchhhHHHhhhccCCCCCHHHHHHHHHhcCCCEEEEeccCHH---H-----HHcCCcEEEEc
Q 017781 178 FLTLKNFQGLDLGKMDEANDSGLAAYVAGQIDRSLSWKDVKWLQTITKLPILVKGVLTAE---D-----VQAGAAGIIVS 249 (366)
Q Consensus 178 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~i~~lr~~~~~pv~vK~v~~~~---d-----~~aGad~I~vs 249 (366)
+. . +. ..+....+.++++++.+++||++|...+.. + .++|+|+|+++
T Consensus 141 ~~----------------~--g~-------~~~~~~~eiv~~v~~~~~iPv~vKl~p~~~~~~~~a~~l~~~Gadgi~~~ 195 (325)
T cd04739 141 DI----------------S--GA-------EVEQRYLDILRAVKSAVTIPVAVKLSPFFSALAHMAKQLDAAGADGLVLF 195 (325)
T ss_pred Cc----------------c--cc-------hHHHHHHHHHHHHHhccCCCEEEEcCCCccCHHHHHHHHHHcCCCeEEEE
Confidence 00 0 00 001234577999999999999999875432 2 88999999999
Q ss_pred CCC-ccCCC---------C---Cc----chHHHHHHHHHHcCCCceEEEecCCCCHHHHHHHHHhCcCEEEecHHHHHHh
Q 017781 250 NHG-ARQLD---------Y---VP----ATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFIGRPVVYSL 312 (366)
Q Consensus 250 ~~g-g~~~~---------~---~~----~~~~~l~~i~~~~~~~i~vi~~GGI~~~~dv~kalalGAd~V~igr~~l~~l 312 (366)
|+. +...+ + |+ -.++.+.++++.+ ++|||++|||++++|+.++|.+|||+|++||++++.
T Consensus 196 nt~~~~~id~~~~~~~~~~glSG~~~~~~al~~v~~v~~~~--~ipIig~GGI~s~~Da~e~l~aGA~~Vqv~ta~~~~- 272 (325)
T cd04739 196 NRFYQPDIDLETLEVVPNLLLSSPAEIRLPLRWIAILSGRV--KASLAASGGVHDAEDVVKYLLAGADVVMTTSALLRH- 272 (325)
T ss_pred cCcCCCCccccccceecCCCcCCccchhHHHHHHHHHHccc--CCCEEEECCCCCHHHHHHHHHcCCCeeEEehhhhhc-
Confidence 975 22111 1 11 1345566666655 799999999999999999999999999999999873
Q ss_pred hhcCHHHHHHHHHHHHHHHHHHHHHcCCCChhhhccc
Q 017781 313 AAEGEKGVRRVLEMLREEFELAMALSGCRSLKEITRD 349 (366)
Q Consensus 313 ~~~G~~gv~~~~~~l~~el~~~m~~~G~~~l~el~~~ 349 (366)
|+. ++..+.+||+.+|...|+++++|+++.
T Consensus 273 ---gp~----~~~~i~~~L~~~l~~~g~~~i~e~~G~ 302 (325)
T cd04739 273 ---GPD----YIGTLLAGLEAWMEEHGYESVQQLRGS 302 (325)
T ss_pred ---Cch----HHHHHHHHHHHHHHHcCCCCHHHHhcc
Confidence 553 677899999999999999999999984
|
DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences and cellular location. Members of class 1 are cytosolic enzymes and multimers while class 2 enzymes are membrane associated and monomeric. The class 1 enzymes can be further divided into subtypes 1A and 1B which are homodimers and heterotetrameric proteins, respectively. This subgroup has the conserved FMN binding site, but lacks some catalytic residues and may therefore be inactive. |
| >PRK07259 dihydroorotate dehydrogenase 1B; Reviewed | Back alignment and domain information |
|---|
Probab=99.90 E-value=1.1e-21 Score=188.79 Aligned_cols=235 Identities=21% Similarity=0.259 Sum_probs=176.0
Q ss_pred ccceeEcCcccCCceEecccccccccCChhhHHHHHHHHHcCCceec-CCCCCC--------------------------
Q 017781 60 DMNTTVLGFKISMPIMIAPTAMQKMAHPEGEYATARAASAAGTIMTL-SSWSTS-------------------------- 112 (366)
Q Consensus 60 d~st~l~g~~l~~Pi~iApm~~~~l~~~~~e~~la~aa~~~G~~~~v-s~~~~~-------------------------- 112 (366)
|++|+++|++|++||++|+=.. +.+..+++.+.+.|.++++ .|....
T Consensus 1 ~l~~~~~G~~~~nPv~~aag~~------~~~~~~~~~~~~~g~g~v~~kti~~~~~~g~~~pr~~~~~~~~~n~~g~~~~ 74 (301)
T PRK07259 1 RLSVELPGLKLKNPVMPASGTF------GFGGEYARFYDLNGLGAIVTKSTTLEPREGNPTPRIAETPGGMLNAIGLQNP 74 (301)
T ss_pred CCceEECCEECCCCcEECCcCC------CCCHHHHHHhhhcCCcEEEeCCCCCCCCCCCCCCcEEecCCceeecCCCCCc
Confidence 6899999999999999987211 2355788888888888875 333210
Q ss_pred CHH----HHhcc---CCCceEEEeeecCCHHHHHHHHHHHHHcC-CCEEEEecCCCCCcchhHHHhhhcCCCCccccccc
Q 017781 113 SVE----EVAST---GPGIRFFQLYVYKDRNVVAQLVRRAERAG-FKAIALTVDTPRLGRREADIKNRFTLPPFLTLKNF 184 (366)
Q Consensus 113 ~~e----~i~~~---~~~~~~~Qly~~~d~~~~~~~l~ra~~~G-~~ai~vtvd~p~~g~r~~d~~~~~~~p~~~~~~~~ 184 (366)
..+ ++.+. ...+...|+. ..+.+...+.+++++++| ++++.+++.||... .+ +.
T Consensus 75 g~~~~~~~~~~~~~~~~~p~i~si~-g~~~~~~~~~a~~~~~aG~~D~iElN~~cP~~~-------~g-----g~----- 136 (301)
T PRK07259 75 GVDAFIEEELPWLEEFDTPIIANVA-GSTEEEYAEVAEKLSKAPNVDAIELNISCPNVK-------HG-----GM----- 136 (301)
T ss_pred CHHHHHHHHHHHHhccCCcEEEEec-cCCHHHHHHHHHHHhccCCcCEEEEECCCCCCC-------CC-----cc-----
Confidence 112 11111 1246788986 467888889999999998 99999999998631 00 00
Q ss_pred cccccCCCccccchhhHHHhhhccCCCCCHHHHHHHHHhcCCCEEEEeccCHHH--------HHcCCcEEEEcCCC-ccC
Q 017781 185 QGLDLGKMDEANDSGLAAYVAGQIDRSLSWKDVKWLQTITKLPILVKGVLTAED--------VQAGAAGIIVSNHG-ARQ 255 (366)
Q Consensus 185 ~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~i~~lr~~~~~pv~vK~v~~~~d--------~~aGad~I~vs~~g-g~~ 255 (366)
.+ ..++.+.++.++++|+.+++||++|...+.++ .++|+|+|+++|.. |..
T Consensus 137 ------------------~~--~~~~~~~~eiv~~vr~~~~~pv~vKl~~~~~~~~~~a~~l~~~G~d~i~~~nt~~g~~ 196 (301)
T PRK07259 137 ------------------AF--GTDPELAYEVVKAVKEVVKVPVIVKLTPNVTDIVEIAKAAEEAGADGLSLINTLKGMA 196 (301)
T ss_pred ------------------cc--ccCHHHHHHHHHHHHHhcCCCEEEEcCCCchhHHHHHHHHHHcCCCEEEEEccccccc
Confidence 00 02345678899999999999999998866544 78999999997732 211
Q ss_pred C---------------CCC----cchHHHHHHHHHHcCCCceEEEecCCCCHHHHHHHHHhCcCEEEecHHHHHHhhhcC
Q 017781 256 L---------------DYV----PATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFIGRPVVYSLAAEG 316 (366)
Q Consensus 256 ~---------------~~~----~~~~~~l~~i~~~~~~~i~vi~~GGI~~~~dv~kalalGAd~V~igr~~l~~l~~~G 316 (366)
. ..+ +..++.+.++++.+ ++|||++|||++++|+.++|++|||+|++||++++.
T Consensus 197 ~~~~~~~~~~~~~~gg~sg~~~~p~~l~~v~~i~~~~--~ipvi~~GGI~~~~da~~~l~aGAd~V~igr~ll~~----- 269 (301)
T PRK07259 197 IDIKTRKPILANVTGGLSGPAIKPIALRMVYQVYQAV--DIPIIGMGGISSAEDAIEFIMAGASAVQVGTANFYD----- 269 (301)
T ss_pred cccccCceeecCCcCccCCcCcccccHHHHHHHHHhC--CCCEEEECCCCCHHHHHHHHHcCCCceeEcHHHhcC-----
Confidence 0 011 22567888888887 799999999999999999999999999999999863
Q ss_pred HHHHHHHHHHHHHHHHHHHHHcCCCChhhhccc
Q 017781 317 EKGVRRVLEMLREEFELAMALSGCRSLKEITRD 349 (366)
Q Consensus 317 ~~gv~~~~~~l~~el~~~m~~~G~~~l~el~~~ 349 (366)
+ .+++.++++++.+|...|+++++|+.+.
T Consensus 270 P----~~~~~i~~~l~~~~~~~g~~~i~~~~g~ 298 (301)
T PRK07259 270 P----YAFPKIIEGLEAYLDKYGIKSIEEIVGI 298 (301)
T ss_pred c----HHHHHHHHHHHHHHHHcCCCCHHHHhCc
Confidence 3 4677899999999999999999999864
|
|
| >PRK07565 dihydroorotate dehydrogenase 2; Reviewed | Back alignment and domain information |
|---|
Probab=99.89 E-value=2.6e-21 Score=188.92 Aligned_cols=236 Identities=19% Similarity=0.198 Sum_probs=167.0
Q ss_pred ccceeEcCcccCCceEecccccccccCChhhHHHHHHHHHcCCceecC-CCC----------------------------
Q 017781 60 DMNTTVLGFKISMPIMIAPTAMQKMAHPEGEYATARAASAAGTIMTLS-SWS---------------------------- 110 (366)
Q Consensus 60 d~st~l~g~~l~~Pi~iApm~~~~l~~~~~e~~la~aa~~~G~~~~vs-~~~---------------------------- 110 (366)
|++|+++|.+|++||++|.-+.. .+.+..+.+.+.|++.++. |..
T Consensus 2 ~l~~~~~Gl~l~nPv~~asg~~~------~~~~~~~~~~~~g~Gavv~kti~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 75 (334)
T PRK07565 2 DLSTTYLGLTLRNPLVASASPLS------ESVDNVKRLEDAGAGAVVLKSLFEEQIRHEAAELDRHLTHGTESFAEALDY 75 (334)
T ss_pred CceEEECCEecCCCCEecCcCCC------CCHHHHHHHHHCCCeEEEEeeCCHHHhhccccccccccccCCCcchhhhhh
Confidence 68999999999999998874322 2334455577888776652 111
Q ss_pred -------CCCHHHHh-------ccCCCceEEEeeecCCHHHHHHHHHHHHHcCCCEEEEecCCCCCcchhHHHhhhcCCC
Q 017781 111 -------TSSVEEVA-------STGPGIRFFQLYVYKDRNVVAQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFTLP 176 (366)
Q Consensus 111 -------~~~~e~i~-------~~~~~~~~~Qly~~~d~~~~~~~l~ra~~~G~~ai~vtvd~p~~g~r~~d~~~~~~~p 176 (366)
+..+++.. +....|.+.|+.. .+.+...+.+++++++|++++.+|+.||.... +.
T Consensus 76 ~n~~gl~n~g~d~~~~~i~~~~~~~~~pvi~sI~g-~~~~e~~~~a~~~~~agad~ielN~scpp~~~-------~~--- 144 (334)
T PRK07565 76 FPEPAKFYVGPEEYLELIRRAKEAVDIPVIASLNG-SSAGGWVDYARQIEQAGADALELNIYYLPTDP-------DI--- 144 (334)
T ss_pred hhhhhccCcCHHHHHHHHHHHHHhcCCcEEEEecc-CCHHHHHHHHHHHHHcCCCEEEEeCCCCCCCC-------CC---
Confidence 01111111 1112467888863 55666678888888899999999998863200 00
Q ss_pred CccccccccccccCCCccccchhhHHHhhhccCCCCCHHHHHHHHHhcCCCEEEEeccCHH---H-----HHcCCcEEEE
Q 017781 177 PFLTLKNFQGLDLGKMDEANDSGLAAYVAGQIDRSLSWKDVKWLQTITKLPILVKGVLTAE---D-----VQAGAAGIIV 248 (366)
Q Consensus 177 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~i~~lr~~~~~pv~vK~v~~~~---d-----~~aGad~I~v 248 (366)
. +. ......++.++++++.+++||++|...... + .++|+|+|++
T Consensus 145 -------------------~--g~-------~~~~~~~eil~~v~~~~~iPV~vKl~p~~~~~~~~a~~l~~~G~dgI~~ 196 (334)
T PRK07565 145 -------------------S--GA-------EVEQRYLDILRAVKSAVSIPVAVKLSPYFSNLANMAKRLDAAGADGLVL 196 (334)
T ss_pred -------------------c--cc-------cHHHHHHHHHHHHHhccCCcEEEEeCCCchhHHHHHHHHHHcCCCeEEE
Confidence 0 00 001224688999999999999999775443 2 7899999999
Q ss_pred cCCCc-cCC---------CCC---c----chHHHHHHHHHHcCCCceEEEecCCCCHHHHHHHHHhCcCEEEecHHHHHH
Q 017781 249 SNHGA-RQL---------DYV---P----ATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFIGRPVVYS 311 (366)
Q Consensus 249 s~~gg-~~~---------~~~---~----~~~~~l~~i~~~~~~~i~vi~~GGI~~~~dv~kalalGAd~V~igr~~l~~ 311 (366)
+|+.. ... .++ + -.++.+.++++.+ ++|||++|||++++|+.|+|.+|||+|++||++++.
T Consensus 197 ~n~~~~~~~d~~~~~~~~~~glsg~~~~~~al~~v~~~~~~~--~ipIig~GGI~s~~Da~e~l~aGA~~V~v~t~~~~~ 274 (334)
T PRK07565 197 FNRFYQPDIDLETLEVVPGLVLSTPAELRLPLRWIAILSGRV--GADLAATTGVHDAEDVIKMLLAGADVVMIASALLRH 274 (334)
T ss_pred ECCcCCCCcChhhcccccCCCCCCchhhhHHHHHHHHHHhhc--CCCEEEECCCCCHHHHHHHHHcCCCceeeehHHhhh
Confidence 98742 111 111 1 1345566666666 799999999999999999999999999999999873
Q ss_pred hhhcCHHHHHHHHHHHHHHHHHHHHHcCCCChhhhcccc
Q 017781 312 LAAEGEKGVRRVLEMLREEFELAMALSGCRSLKEITRDH 350 (366)
Q Consensus 312 l~~~G~~gv~~~~~~l~~el~~~m~~~G~~~l~el~~~~ 350 (366)
|+ .+++.+.+||+.+|...|+++++|+++..
T Consensus 275 ----g~----~~~~~i~~~L~~~l~~~g~~~i~e~~g~~ 305 (334)
T PRK07565 275 ----GP----DYIGTILRGLEDWMERHGYESLQQFRGSM 305 (334)
T ss_pred ----Cc----HHHHHHHHHHHHHHHHcCCCCHHHHhccc
Confidence 54 47788999999999999999999999864
|
|
| >cd04740 DHOD_1B_like Dihydroorotate dehydrogenase (DHOD) class 1B FMN-binding domain | Back alignment and domain information |
|---|
Probab=99.88 E-value=4.8e-21 Score=184.00 Aligned_cols=233 Identities=21% Similarity=0.270 Sum_probs=167.9
Q ss_pred ceeEcCcccCCceEecccccccccCChhhHHHHHHHHHcCCceecC-CCCCC--------------------------CH
Q 017781 62 NTTVLGFKISMPIMIAPTAMQKMAHPEGEYATARAASAAGTIMTLS-SWSTS--------------------------SV 114 (366)
Q Consensus 62 st~l~g~~l~~Pi~iApm~~~~l~~~~~e~~la~aa~~~G~~~~vs-~~~~~--------------------------~~ 114 (366)
+|+++|.++++||++|+ |..+ ....+.+.+...|.++++. |.+.. .+
T Consensus 1 ~~~~~G~~~~nP~~~aa-g~~~-----~~~~~~~~~~~g~~g~v~~~ti~~~~~~~~~~p~~~~~~~~~~n~~g~~~~g~ 74 (296)
T cd04740 1 SVELAGLRLKNPVILAS-GTFG-----FGEELSRVADLGKLGAIVTKSITLEPREGNPPPRVVETPGGMLNAIGLQNPGV 74 (296)
T ss_pred CeEECCEEcCCCCEECC-CCCC-----CHHHHHHHHhcCCceEEEECCcCCCCCCCCCCCeEEecCcceeeecCCCCcCH
Confidence 57899999999999995 2111 1234455444444777653 22111 11
Q ss_pred HH----Hhcc---CCCceEEEeeecCCHHHHHHHHHHHHHcCCCEEEEecCCCCCcchhHHHhhhcCCCCcccccccccc
Q 017781 115 EE----VAST---GPGIRFFQLYVYKDRNVVAQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLTLKNFQGL 187 (366)
Q Consensus 115 e~----i~~~---~~~~~~~Qly~~~d~~~~~~~l~ra~~~G~~ai~vtvd~p~~g~r~~d~~~~~~~p~~~~~~~~~~~ 187 (366)
++ +.+. ...|..+||. ..+.+...+.+++++++|++++.+|+.||....|-
T Consensus 75 ~~~~~~~~~~~~~~~~p~ivsi~-g~~~~~~~~~a~~~~~~G~d~iElN~~cP~~~~~g--------------------- 132 (296)
T cd04740 75 EAFLEELLPWLREFGTPVIASIA-GSTVEEFVEVAEKLADAGADAIELNISCPNVKGGG--------------------- 132 (296)
T ss_pred HHHHHHHHHHhhcCCCcEEEEEe-cCCHHHHHHHHHHHHHcCCCEEEEECCCCCCCCCc---------------------
Confidence 22 2111 1257889987 46778888899999999999999999999641110
Q ss_pred ccCCCccccchhhHHHhhhccCCCCCHHHHHHHHHhcCCCEEEEeccCHHH--------HHcCCcEEEEcCCC-ccCCC-
Q 017781 188 DLGKMDEANDSGLAAYVAGQIDRSLSWKDVKWLQTITKLPILVKGVLTAED--------VQAGAAGIIVSNHG-ARQLD- 257 (366)
Q Consensus 188 ~~~~~~~~~~~~~~~~~~~~~d~~~~~~~i~~lr~~~~~pv~vK~v~~~~d--------~~aGad~I~vs~~g-g~~~~- 257 (366)
..+ . .++.+..+.++++|+.+++||++|...+.++ .++|+|+|+++|+. |+..+
T Consensus 133 -------------~~~-~--~~~~~~~eiv~~vr~~~~~Pv~vKl~~~~~~~~~~a~~~~~~G~d~i~~~nt~~g~~~~~ 196 (296)
T cd04740 133 -------------MAF-G--TDPEAVAEIVKAVKKATDVPVIVKLTPNVTDIVEIARAAEEAGADGLTLINTLKGMAIDI 196 (296)
T ss_pred -------------ccc-c--CCHHHHHHHHHHHHhccCCCEEEEeCCCchhHHHHHHHHHHcCCCEEEEECCCccccccc
Confidence 000 0 2345567889999999999999998755433 78999999998752 22111
Q ss_pred --------------CCc----chHHHHHHHHHHcCCCceEEEecCCCCHHHHHHHHHhCcCEEEecHHHHHHhhhcCHHH
Q 017781 258 --------------YVP----ATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFIGRPVVYSLAAEGEKG 319 (366)
Q Consensus 258 --------------~~~----~~~~~l~~i~~~~~~~i~vi~~GGI~~~~dv~kalalGAd~V~igr~~l~~l~~~G~~g 319 (366)
.++ ..++.+.++++.+ ++|||++|||++++|+.++|++|||+|++||++++. +
T Consensus 197 ~~~~~~~~~~~gg~sg~~~~~~~~~~i~~i~~~~--~ipii~~GGI~~~~da~~~l~~GAd~V~igra~l~~-----p-- 267 (296)
T cd04740 197 ETRKPILGNVTGGLSGPAIKPIALRMVYQVYKAV--EIPIIGVGGIASGEDALEFLMAGASAVQVGTANFVD-----P-- 267 (296)
T ss_pred ccCceeecCCcceecCcccchHHHHHHHHHHHhc--CCCEEEECCCCCHHHHHHHHHcCCCEEEEchhhhcC-----h--
Confidence 122 2457788888877 799999999999999999999999999999999863 3
Q ss_pred HHHHHHHHHHHHHHHHHHcCCCChhhhccc
Q 017781 320 VRRVLEMLREEFELAMALSGCRSLKEITRD 349 (366)
Q Consensus 320 v~~~~~~l~~el~~~m~~~G~~~l~el~~~ 349 (366)
.+++.++++|+++|+..|+++++|+++.
T Consensus 268 --~~~~~i~~~l~~~~~~~g~~~~~~~~g~ 295 (296)
T cd04740 268 --EAFKEIIEGLEAYLDEEGIKSIEELVGL 295 (296)
T ss_pred --HHHHHHHHHHHHHHHHcCCCCHHHHhCc
Confidence 3678899999999999999999999863
|
DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences and cellular location. Members of class 1 are cytosolic enzymes and multimers while class 2 enzymes are membrane associated and monomeric. The class 1 enzymes can be further divided into subtypes 1A and 1B which are homodimers and heterotetrameric proteins, respectively. |
| >PRK10415 tRNA-dihydrouridine synthase B; Provisional | Back alignment and domain information |
|---|
Probab=99.87 E-value=4.6e-21 Score=186.03 Aligned_cols=245 Identities=16% Similarity=0.173 Sum_probs=180.6
Q ss_pred eEcCcccCCceEecccccccccCChhhHHHHHHHHHcCCceecCCCCCCCHH--------HHhcc--CCCceEEEeeecC
Q 017781 64 TVLGFKISMPIMIAPTAMQKMAHPEGEYATARAASAAGTIMTLSSWSTSSVE--------EVAST--GPGIRFFQLYVYK 133 (366)
Q Consensus 64 ~l~g~~l~~Pi~iApm~~~~l~~~~~e~~la~aa~~~G~~~~vs~~~~~~~e--------~i~~~--~~~~~~~Qly~~~ 133 (366)
++.+..+..|+++|||++.+ +.++++.|.++|..++.+++.+.... ..... .+.+..+||+ +.
T Consensus 2 ~i~~~~~~~~~~lAPM~g~t------d~~fR~l~~~~g~~~~~temvs~~~~~~~~~~~~~~~~~~~~~~~~~vQl~-g~ 74 (321)
T PRK10415 2 RIGQYQLRNRLIAAPMAGIT------DRPFRTLCYEMGAGLTVSEMMSSNPQVWESDKSRLRMVHIDEPGIRTVQIA-GS 74 (321)
T ss_pred ccCCccCCCCEEecCCCCCC------cHHHHHHHHHHCCCEEEEccEEcchhhhcCHhHHHHhccCccCCCEEEEEe-CC
Confidence 35667888999999998765 88999999999999888887543211 01111 1246779997 67
Q ss_pred CHHHHHHHHHHHHHcCCCEEEEecCCCCCcchhHHHhhhcCCCCccccccccccccCCCccccchhhHHHhhhccCCCCC
Q 017781 134 DRNVVAQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLTLKNFQGLDLGKMDEANDSGLAAYVAGQIDRSLS 213 (366)
Q Consensus 134 d~~~~~~~l~ra~~~G~~ai~vtvd~p~~g~r~~d~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~ 213 (366)
|++.+.+.++++++.|++.|.+|+.||.. + +.-+ +.+..+. .+|++.
T Consensus 75 ~~~~~~~aa~~~~~~g~d~IdlN~gCP~~--~-------------v~~~----------------g~Gs~ll--~~p~~~ 121 (321)
T PRK10415 75 DPKEMADAARINVESGAQIIDINMGCPAK--K-------------VNRK----------------LAGSALL--QYPDLV 121 (321)
T ss_pred CHHHHHHHHHHHHHCCCCEEEEeCCCCHH--H-------------HcCC----------------CcccHHh--cCHHHH
Confidence 88888888888888999999999999952 0 0000 0112222 266677
Q ss_pred HHHHHHHHHhcCCCEEEEeccCHH-------H-----HHcCCcEEEEcCCCccCCCCCcchHHHHHHHHHHcCCCceEEE
Q 017781 214 WKDVKWLQTITKLPILVKGVLTAE-------D-----VQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFL 281 (366)
Q Consensus 214 ~~~i~~lr~~~~~pv~vK~v~~~~-------d-----~~aGad~I~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~i~vi~ 281 (366)
.+.++.+++.+++||.+|.....+ + .++|+|+|++++....+...+++.++.+.++++.+ ++|||+
T Consensus 122 ~eiv~av~~a~d~pv~vKiR~G~~~~~~~~~~~a~~le~~G~d~i~vh~rt~~~~~~G~a~~~~i~~ik~~~--~iPVI~ 199 (321)
T PRK10415 122 KSILTEVVNAVDVPVTLKIRTGWAPEHRNCVEIAQLAEDCGIQALTIHGRTRACLFNGEAEYDSIRAVKQKV--SIPVIA 199 (321)
T ss_pred HHHHHHHHHhcCCceEEEEEccccCCcchHHHHHHHHHHhCCCEEEEecCccccccCCCcChHHHHHHHHhc--CCcEEE
Confidence 788999999999999999864221 1 78999999997654445556777899999999988 799999
Q ss_pred ecCCCCHHHHHHHHH-hCcCEEEecHHHH-----HHhh---h-cC----HHHHHHHHHHHHHHHHHHHHHcCCC-Chhhh
Q 017781 282 DGGVRRGTDVFKALA-LGASGIFIGRPVV-----YSLA---A-EG----EKGVRRVLEMLREEFELAMALSGCR-SLKEI 346 (366)
Q Consensus 282 ~GGI~~~~dv~kala-lGAd~V~igr~~l-----~~l~---~-~G----~~gv~~~~~~l~~el~~~m~~~G~~-~l~el 346 (366)
+|||++++|+.+++. .|||+||+||+++ +.-. . .| +...++.++.+.++++.+..+.|.. .+.++
T Consensus 200 nGgI~s~~da~~~l~~~gadgVmiGR~~l~nP~if~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 279 (321)
T PRK10415 200 NGDITDPLKARAVLDYTGADALMIGRAAQGRPWIFREIQHYLDTGELLPPLPLAEVKRLLCAHVRELHDFYGPAKGYRIA 279 (321)
T ss_pred eCCCCCHHHHHHHHhccCCCEEEEChHhhcCChHHHHHHHHHhCCCCCCCCCHHHHHHHHHHHHHHHHHHHChHHHHHHH
Confidence 999999999999998 6999999999654 3211 1 12 1234567788888888888887754 56666
Q ss_pred cccc
Q 017781 347 TRDH 350 (366)
Q Consensus 347 ~~~~ 350 (366)
++..
T Consensus 280 rk~~ 283 (321)
T PRK10415 280 RKHV 283 (321)
T ss_pred HHHH
Confidence 6654
|
|
| >PLN02495 oxidoreductase, acting on the CH-CH group of donors | Back alignment and domain information |
|---|
Probab=99.87 E-value=1.4e-20 Score=185.25 Aligned_cols=248 Identities=20% Similarity=0.269 Sum_probs=175.1
Q ss_pred CCCCccceeEcCcccCCceEecccccccccCChhhHHHHHHHHHcCCceecCC-CC-------CC---------------
Q 017781 56 VSKIDMNTTVLGFKISMPIMIAPTAMQKMAHPEGEYATARAASAAGTIMTLSS-WS-------TS--------------- 112 (366)
Q Consensus 56 ~~~vd~st~l~g~~l~~Pi~iApm~~~~l~~~~~e~~la~aa~~~G~~~~vs~-~~-------~~--------------- 112 (366)
.+..|++|+|+|+++++||++|.-.. ..+....+.+.+.|++.++.- .+ +.
T Consensus 6 ~~~~dLst~~~Gl~l~NP~i~ASgp~------t~~~e~~~~~~~~g~GAVV~KTi~~~~~~~~n~~pr~~~~~~g~~~~~ 79 (385)
T PLN02495 6 ASEPDLSVTVNGLKMPNPFVIGSGPP------GTNYTVMKRAFDEGWGGVIAKTVSLDASKVINVTPRYARLRAGANGSA 79 (385)
T ss_pred cCCCcceEEECCEEcCCCcEeCCccC------CCCHHHHHHHHhcCCeEEEeccccCCccccCCCCCeEEecCccccccc
Confidence 35688999999999999999987322 224556666666788877621 10 00
Q ss_pred ----------------CHH----HHh---ccCC-CceEEEeeecCCHHHHHHHHHHHHHcCCCEEEEecCCCCCcchhHH
Q 017781 113 ----------------SVE----EVA---STGP-GIRFFQLYVYKDRNVVAQLVRRAERAGFKAIALTVDTPRLGRREAD 168 (366)
Q Consensus 113 ----------------~~e----~i~---~~~~-~~~~~Qly~~~d~~~~~~~l~ra~~~G~~ai~vtvd~p~~g~r~~d 168 (366)
.++ ++. +..+ .|.+..+....+.+...+++++++++|++++.+++.||...
T Consensus 80 ~~n~iGl~N~~~~s~~g~~~~l~~i~~~k~~~~~~pvIaSi~~~~s~~~~~~~a~~~e~~GaD~iELNiSCPn~~----- 154 (385)
T PLN02495 80 KGRVIGWQNIELISDRPFETMLAEFKQLKEEYPDRILIASIMEEYNKDAWEEIIERVEETGVDALEINFSCPHGM----- 154 (385)
T ss_pred ccccccccCcccccccCHHHHHHHHHHHHhhCCCCcEEEEccCCCCHHHHHHHHHHHHhcCCCEEEEECCCCCCC-----
Confidence 122 221 1223 36677765446788888999999999999999999999631
Q ss_pred HhhhcCCCCccccccccccccCCCccccchhhHHHhhhccCCCCCHHHHHHHHHhcCCCEEEEeccCHHH--------HH
Q 017781 169 IKNRFTLPPFLTLKNFQGLDLGKMDEANDSGLAAYVAGQIDRSLSWKDVKWLQTITKLPILVKGVLTAED--------VQ 240 (366)
Q Consensus 169 ~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~i~~lr~~~~~pv~vK~v~~~~d--------~~ 240 (366)
+ .+.. +..+. .+++...+.++++|+.+++||++|...+..+ .+
T Consensus 155 -------~----~r~~----------------g~~~g--q~~e~~~~i~~~Vk~~~~iPv~vKLsPn~t~i~~ia~aa~~ 205 (385)
T PLN02495 155 -------P----ERKM----------------GAAVG--QDCDLLEEVCGWINAKATVPVWAKMTPNITDITQPARVALK 205 (385)
T ss_pred -------C----cCcc----------------chhhc--cCHHHHHHHHHHHHHhhcCceEEEeCCChhhHHHHHHHHHH
Confidence 0 0000 00001 2444555678999999999999999876654 88
Q ss_pred cCCcEEEEcCCCc--cCC----------------CCC---cc----hHHHHHHHHHHcC----CCceEEEecCCCCHHHH
Q 017781 241 AGAAGIIVSNHGA--RQL----------------DYV---PA----TIMALEEVVKATQ----GRIPVFLDGGVRRGTDV 291 (366)
Q Consensus 241 aGad~I~vs~~gg--~~~----------------~~~---~~----~~~~l~~i~~~~~----~~i~vi~~GGI~~~~dv 291 (366)
+|+|+|++.|+-. ..+ .+| ++ .+..+.++++.+. .++|||+.|||.+++|+
T Consensus 206 ~Gadgi~liNT~~~~~~ID~~t~~p~~~~~~~~~~GGlSG~alkpiAl~~v~~i~~~~~~~~~~~ipIiGvGGI~s~~Da 285 (385)
T PLN02495 206 SGCEGVAAINTIMSVMGINLDTLRPEPCVEGYSTPGGYSSKAVRPIALAKVMAIAKMMKSEFPEDRSLSGIGGVETGGDA 285 (385)
T ss_pred hCCCEEEEecccCcccccccccCccccccCCCCCCCCccchhhhHHHHHHHHHHHHHHhhhccCCCcEEEECCCCCHHHH
Confidence 9999999998642 111 011 11 2234455666552 25899999999999999
Q ss_pred HHHHHhCcCEEEecHHHHHHhhhcCHHHHHHHHHHHHHHHHHHHHHcCCCChhhhcccce
Q 017781 292 FKALALGASGIFIGRPVVYSLAAEGEKGVRRVLEMLREEFELAMALSGCRSLKEITRDHI 351 (366)
Q Consensus 292 ~kalalGAd~V~igr~~l~~l~~~G~~gv~~~~~~l~~el~~~m~~~G~~~l~el~~~~l 351 (366)
++.|.+||++|++++.+++. |+. +++.|.+||+.+|...|+++++|+++..+
T Consensus 286 ~e~i~aGAs~VQv~Ta~~~~----Gp~----vi~~i~~~L~~~m~~~G~~si~e~~G~~~ 337 (385)
T PLN02495 286 AEFILLGADTVQVCTGVMMH----GYP----LVKNLCAELQDFMKKHNFSSIEDFRGASL 337 (385)
T ss_pred HHHHHhCCCceeEeeeeeec----CcH----HHHHHHHHHHHHHHHcCCCCHHHHhCcCC
Confidence 99999999999999998763 654 67789999999999999999999998654
|
|
| >PRK07107 inosine 5-monophosphate dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=99.87 E-value=9.5e-21 Score=192.99 Aligned_cols=136 Identities=26% Similarity=0.344 Sum_probs=113.7
Q ss_pred HHHHHHHHHhcCCCEEEEe--ccCHHH----HHcCCcEEEEcCCCc-----c-CCCCCcchHHHHHHHHHHc-------C
Q 017781 214 WKDVKWLQTITKLPILVKG--VLTAED----VQAGAAGIIVSNHGA-----R-QLDYVPATIMALEEVVKAT-------Q 274 (366)
Q Consensus 214 ~~~i~~lr~~~~~pv~vK~--v~~~~d----~~aGad~I~vs~~gg-----~-~~~~~~~~~~~l~~i~~~~-------~ 274 (366)
.+.|+++|+.++.++.|+. +.+.++ .++|||+|.|++|+| | +.+.++|+++++.++++++ +
T Consensus 271 ~~~i~~ir~~~~~~~~V~aGnV~t~e~a~~li~aGAd~I~vg~g~Gs~c~tr~~~~~g~~~~~ai~~~~~a~~~~~~~~g 350 (502)
T PRK07107 271 KRTLDWIREKYGDSVKVGAGNVVDREGFRYLAEAGADFVKVGIGGGSICITREQKGIGRGQATALIEVAKARDEYFEETG 350 (502)
T ss_pred HHHHHHHHHhCCCCceEEeccccCHHHHHHHHHcCCCEEEECCCCCcCcccccccCCCccHHHHHHHHHHHHHHHHhhcC
Confidence 5779999999975555665 788887 999999999999999 5 5778899999999998875 2
Q ss_pred CCceEEEecCCCCHHHHHHHHHhCcCEEEecHHHH--------------------HHhhh--------------------
Q 017781 275 GRIPVFLDGGVRRGTDVFKALALGASGIFIGRPVV--------------------YSLAA-------------------- 314 (366)
Q Consensus 275 ~~i~vi~~GGI~~~~dv~kalalGAd~V~igr~~l--------------------~~l~~-------------------- 314 (366)
.++|||+||||+++.|++|||++|||+||+|++|- ++++.
T Consensus 351 ~~~~viadgGir~~gdi~KAla~GA~~vm~G~~~ag~~espg~~~~~~g~~~k~yrgm~s~~a~~~~ry~~~~~~~~~~~ 430 (502)
T PRK07107 351 VYIPICSDGGIVYDYHMTLALAMGADFIMLGRYFARFDESPTNKVNINGNYMKEYWGEGSNRARNWQRYDLGGDKKLSFE 430 (502)
T ss_pred CcceEEEcCCCCchhHHHHHHHcCCCeeeeChhhhccccCCCcEEEECCEEEEEeecccCHhhhhccccccccccccccC
Confidence 25999999999999999999999999999999982 11111
Q ss_pred cCH-------HHHHHHHHHHHHHHHHHHHHcCCCChhhhccc
Q 017781 315 EGE-------KGVRRVLEMLREEFELAMALSGCRSLKEITRD 349 (366)
Q Consensus 315 ~G~-------~gv~~~~~~l~~el~~~m~~~G~~~l~el~~~ 349 (366)
+|- ..+.+++..+...|+..|.++|..++.||+..
T Consensus 431 egv~~~v~~~g~~~~~~~~~~~glrs~~~y~g~~~i~~l~~~ 472 (502)
T PRK07107 431 EGVDSYVPYAGSLKDNVAITLSKVRSTMCNCGALSIPELQQK 472 (502)
T ss_pred CccEEEecCCCCHHHHHHHHHHHHHHhhhccCCCcHHHHHhC
Confidence 010 12888999999999999999999999999865
|
|
| >COG0167 PyrD Dihydroorotate dehydrogenase [Nucleotide transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.87 E-value=2.7e-20 Score=177.58 Aligned_cols=236 Identities=25% Similarity=0.376 Sum_probs=164.0
Q ss_pred ccceeEcCcccCCceEecccccccccCChhhHHHHHHHHHcCCceec-CCCCCCCHHHHhccCCCceEEE----------
Q 017781 60 DMNTTVLGFKISMPIMIAPTAMQKMAHPEGEYATARAASAAGTIMTL-SSWSTSSVEEVASTGPGIRFFQ---------- 128 (366)
Q Consensus 60 d~st~l~g~~l~~Pi~iApm~~~~l~~~~~e~~la~aa~~~G~~~~v-s~~~~~~~e~i~~~~~~~~~~Q---------- 128 (366)
+++++++|.++++||++|+ |.. ..+.....+..+.|.++++ .|....+ ++.+|.|+.|.
T Consensus 1 ~l~~~~~Gl~f~NPl~lAa-G~~-----~~~~~~~~~~~~~g~G~i~~ktvt~~p----q~Gnp~PR~~~l~~~~~~iN~ 70 (310)
T COG0167 1 DLSTEILGLKFPNPLGLAA-GFD-----GKNGEELDALAALGFGAIVTKTVTPEP----QEGNPKPRLFRLPEDEGLINR 70 (310)
T ss_pred CCceeecceecCCCCeEcc-cCC-----ccCHHHHHHHHhcCCceEEecCCCCcC----CCCCCCCeEEEecCcccHHHh
Confidence 5788999999999999987 221 1244455555555555553 4432211 11111111111
Q ss_pred ----------------------------ee---ecCCHHHHHHHHHHHHHcC-CCEEEEecCCCCCcchhHHHhhhcCCC
Q 017781 129 ----------------------------LY---VYKDRNVVAQLVRRAERAG-FKAIALTVDTPRLGRREADIKNRFTLP 176 (366)
Q Consensus 129 ----------------------------ly---~~~d~~~~~~~l~ra~~~G-~~ai~vtvd~p~~g~r~~d~~~~~~~p 176 (366)
+. .....+...+.+...++++ ++++.+|+.||.. |
T Consensus 71 mG~~N~G~~~~~~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~d~~~~~~~~~~ad~ielNiScPnt-------------~ 137 (310)
T COG0167 71 MGFNNPGADAFLEELKLAKYEGKPIGVNIGKNKGGPSEEAWADYARLLEEAGDADAIELNISCPNT-------------P 137 (310)
T ss_pred cCCCchhHHHHHHHHHhhhhccCCcCcceEEecCCCcHHHHHHHHHHHHhcCCCCEEEEEccCCCC-------------C
Confidence 11 1223455566666667766 7777777777752 1
Q ss_pred CccccccccccccCCCccccchhhHHHhhhccCCCCCHHHHHHHHHhcCCCEEEEeccCHHH--------HHcCCcEEEE
Q 017781 177 PFLTLKNFQGLDLGKMDEANDSGLAAYVAGQIDRSLSWKDVKWLQTITKLPILVKGVLTAED--------VQAGAAGIIV 248 (366)
Q Consensus 177 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~i~~lr~~~~~pv~vK~v~~~~d--------~~aGad~I~v 248 (366)
+..+ + +.+++..-+.++++++..++||++|...+.+| .++|+|+|++
T Consensus 138 ----------------------g~~~-l--~~~~e~l~~l~~~vk~~~~~Pv~vKl~P~~~di~~iA~~~~~~g~Dgl~~ 192 (310)
T COG0167 138 ----------------------GGRA-L--GQDPELLEKLLEAVKAATKVPVFVKLAPNITDIDEIAKAAEEAGADGLIA 192 (310)
T ss_pred ----------------------Chhh-h--ccCHHHHHHHHHHHHhcccCceEEEeCCCHHHHHHHHHHHHHcCCcEEEE
Confidence 0000 1 11444445668899999999999999987766 9999999999
Q ss_pred cCCCccCC--------------CC---Cc----chHHHHHHHHHHcCCCceEEEecCCCCHHHHHHHHHhCcCEEEecHH
Q 017781 249 SNHGARQL--------------DY---VP----ATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFIGRP 307 (366)
Q Consensus 249 s~~gg~~~--------------~~---~~----~~~~~l~~i~~~~~~~i~vi~~GGI~~~~dv~kalalGAd~V~igr~ 307 (366)
.|+-.... .+ |+ -++..+.++++.++.++|||+.|||.|++|+++.|.+||++|++|++
T Consensus 193 ~NT~~~~~~id~~~~~~~~~~~~GGLSG~~ikp~al~~v~~l~~~~~~~ipIIGvGGI~s~~DA~E~i~aGA~~vQv~Ta 272 (310)
T COG0167 193 INTTKSGMKIDLETKKPVLANETGGLSGPPLKPIALRVVAELYKRLGGDIPIIGVGGIETGEDALEFILAGASAVQVGTA 272 (310)
T ss_pred EeeccccccccccccccccCcCCCCcCcccchHHHHHHHHHHHHhcCCCCcEEEecCcCcHHHHHHHHHcCCchheeeee
Confidence 99543110 12 22 25678888888887789999999999999999999999999999999
Q ss_pred HHHHhhhcCHHHHHHHHHHHHHHHHHHHHHcCCCChhhhcccce
Q 017781 308 VVYSLAAEGEKGVRRVLEMLREEFELAMALSGCRSLKEITRDHI 351 (366)
Q Consensus 308 ~l~~l~~~G~~gv~~~~~~l~~el~~~m~~~G~~~l~el~~~~l 351 (366)
+++. |+. +++.+.++|.++|...|++|++|+.+..+
T Consensus 273 l~~~----Gp~----i~~~I~~~l~~~l~~~g~~si~d~iG~~~ 308 (310)
T COG0167 273 LIYK----GPG----IVKEIIKGLARWLEEKGFESIQDIIGSAL 308 (310)
T ss_pred eeee----Cch----HHHHHHHHHHHHHHHcCCCCHHHHhchhc
Confidence 9874 663 77889999999999999999999987654
|
|
| >COG0042 tRNA-dihydrouridine synthase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=99.86 E-value=9.9e-21 Score=183.45 Aligned_cols=246 Identities=24% Similarity=0.285 Sum_probs=190.9
Q ss_pred EcCcccCCceEecccccccccCChhhHHHHHHHHHcCC-ceecCCCCCC------CHHHHh--ccC--CCceEEEeeecC
Q 017781 65 VLGFKISMPIMIAPTAMQKMAHPEGEYATARAASAAGT-IMTLSSWSTS------SVEEVA--STG--PGIRFFQLYVYK 133 (366)
Q Consensus 65 l~g~~l~~Pi~iApm~~~~l~~~~~e~~la~aa~~~G~-~~~vs~~~~~------~~e~i~--~~~--~~~~~~Qly~~~ 133 (366)
+....+..++++|||.+.+ |.++++.++++|. ..+.++|.+. +-+... ... ..|..+||. +.
T Consensus 4 ~~~~~~~~~~~lAPM~gvt------d~~fR~l~~~~ga~~~~~TEmv~~~~~~~~~~~~~~~~~~~~~e~p~~vQl~-gs 76 (323)
T COG0042 4 IGLIELRNRVILAPMAGVT------DLPFRRLARELGAYDLLYTEMVSAKALLHGRKKFLLLLDELEEERPVAVQLG-GS 76 (323)
T ss_pred cccccccCcEEEecCCCCc------cHHHHHHHHHhCCCceEEEccEEEhhhccCCcchhhhcCcCCCCCCEEEEec-CC
Confidence 4556778999999998765 8899999999999 8888887542 111111 111 267899998 68
Q ss_pred CHHHHHHHHHHHHHcCCCEEEEecCCCCCcchhHHHhhhcCCCCccccccccccccCCCccccchhhHHHhhhccCCCCC
Q 017781 134 DRNVVAQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLTLKNFQGLDLGKMDEANDSGLAAYVAGQIDRSLS 213 (366)
Q Consensus 134 d~~~~~~~l~ra~~~G~~ai~vtvd~p~~g~r~~d~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~ 213 (366)
|++.+.+..+.+++.|++.|.||++||.. + ++ ..+.++.++ .+|++.
T Consensus 77 dp~~l~eaA~~~~~~g~~~IdlN~GCP~~--------------~-V~----------------~~g~Ga~Ll--~~p~lv 123 (323)
T COG0042 77 DPELLAEAAKIAEELGADIIDLNCGCPSP--------------K-VV----------------KGGAGAALL--KNPELL 123 (323)
T ss_pred CHHHHHHHHHHHHhcCCCEEeeeCCCChH--------------H-hc----------------CCCcchhhc--CCHHHH
Confidence 89999999999999999999999999953 0 11 011233344 367777
Q ss_pred HHHHHHHHHhcC-CCEEEEeccCHHH------------HHcCCcEEEEcCCCccCCCCCcchHHHHHHHHHHcCCCceEE
Q 017781 214 WKDVKWLQTITK-LPILVKGVLTAED------------VQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVF 280 (366)
Q Consensus 214 ~~~i~~lr~~~~-~pv~vK~v~~~~d------------~~aGad~I~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~i~vi 280 (366)
.+.|+.+++.++ +||.||....+++ .++|++.++|+++...+...++..|+.+.++++.+++ +|||
T Consensus 124 ~~iv~a~~~av~~iPVTVKiRlG~d~~~~~~~~ia~~~~~~g~~~ltVHgRtr~~~y~~~ad~~~I~~vk~~~~~-ipvi 202 (323)
T COG0042 124 AEIVKAMVEAVGDIPVTVKIRLGWDDDDILALEIARILEDAGADALTVHGRTRAQGYLGPADWDYIKELKEAVPS-IPVI 202 (323)
T ss_pred HHHHHHHHHhhCCCCeEEEEecccCcccccHHHHHHHHHhcCCCEEEEecccHHhcCCCccCHHHHHHHHHhCCC-CeEE
Confidence 889999999994 9999998765432 8999999999876655667788999999999999943 9999
Q ss_pred EecCCCCHHHHHHHHH-hCcCEEEecHH-----HHHHh---hhcCH---HHHHHHHHHHHHHHHHHHHHcCCCChhhhcc
Q 017781 281 LDGGVRRGTDVFKALA-LGASGIFIGRP-----VVYSL---AAEGE---KGVRRVLEMLREEFELAMALSGCRSLKEITR 348 (366)
Q Consensus 281 ~~GGI~~~~dv~kala-lGAd~V~igr~-----~l~~l---~~~G~---~gv~~~~~~l~~el~~~m~~~G~~~l~el~~ 348 (366)
++|+|.+.+|+.+.|. .|+|+||+||. +++.- ...|+ ......++.+..+++....+.|...+..+++
T Consensus 203 ~NGdI~s~~~a~~~l~~tg~DgVMigRga~~nP~l~~~i~~~~~g~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~r~ 282 (323)
T COG0042 203 ANGDIKSLEDAKEMLEYTGADGVMIGRGALGNPWLFRQIDYLETGELLPPTLAEVLDILREHLELLLEYYGKKGLRRLRK 282 (323)
T ss_pred eCCCcCCHHHHHHHHHhhCCCEEEEcHHHccCCcHHHHHHHhhcCCCCCCCHHHHHHHHHHHHHHHHHhccccHHHHHHH
Confidence 9999999999999999 68999999994 45431 12233 4567888999999999999998667788776
Q ss_pred cce
Q 017781 349 DHI 351 (366)
Q Consensus 349 ~~l 351 (366)
...
T Consensus 283 h~~ 285 (323)
T COG0042 283 HLG 285 (323)
T ss_pred HHH
Confidence 643
|
|
| >PTZ00314 inosine-5'-monophosphate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.86 E-value=4.7e-20 Score=188.04 Aligned_cols=140 Identities=23% Similarity=0.376 Sum_probs=115.0
Q ss_pred CCCCCHHHHHHHHHhc-CCCEEEEeccCHHH----HHcCCcEEEEcCCCcc------CCCCCcchHHHHHHHHHHcC-CC
Q 017781 209 DRSLSWKDVKWLQTIT-KLPILVKGVLTAED----VQAGAAGIIVSNHGAR------QLDYVPATIMALEEVVKATQ-GR 276 (366)
Q Consensus 209 d~~~~~~~i~~lr~~~-~~pv~vK~v~~~~d----~~aGad~I~vs~~gg~------~~~~~~~~~~~l~~i~~~~~-~~ 276 (366)
+....|+.|+++|+.+ ++||+++.+.+.++ .++|||+|.++.+.|. ..++|.|++.++.++++.+. ..
T Consensus 265 ~s~~~~~~i~~ik~~~~~~~v~aG~V~t~~~a~~~~~aGad~I~vg~g~Gs~~~t~~~~~~g~p~~~ai~~~~~~~~~~~ 344 (495)
T PTZ00314 265 NSIYQIDMIKKLKSNYPHVDIIAGNVVTADQAKNLIDAGADGLRIGMGSGSICITQEVCAVGRPQASAVYHVARYARERG 344 (495)
T ss_pred CchHHHHHHHHHHhhCCCceEEECCcCCHHHHHHHHHcCCCEEEECCcCCcccccchhccCCCChHHHHHHHHHHHhhcC
Confidence 3445678999999997 68999999999887 9999999999755442 24578889999888887654 26
Q ss_pred ceEEEecCCCCHHHHHHHHHhCcCEEEecHHHHH--------------------Hhhh------c---------------
Q 017781 277 IPVFLDGGVRRGTDVFKALALGASGIFIGRPVVY--------------------SLAA------E--------------- 315 (366)
Q Consensus 277 i~vi~~GGI~~~~dv~kalalGAd~V~igr~~l~--------------------~l~~------~--------------- 315 (366)
+|||++|||+++.|++|||++|||+||+|+.|.- +++. .
T Consensus 345 v~vIadGGi~~~~di~kAla~GA~~Vm~G~~~a~~~e~~~~~~~~~g~~~k~yrGm~s~~a~~~~~~~~~y~~~~~~~~~ 424 (495)
T PTZ00314 345 VPCIADGGIKNSGDICKALALGADCVMLGSLLAGTEEAPGEYFFKDGVRLKVYRGMGSLEAMLSKESGERYLDENETIKV 424 (495)
T ss_pred CeEEecCCCCCHHHHHHHHHcCCCEEEECchhccccccCCceeeeCCeEEEEEeccchHHHhhccccccccccccccccc
Confidence 9999999999999999999999999999998832 1110 0
Q ss_pred --CH-------HHHHHHHHHHHHHHHHHHHHcCCCChhhhcc
Q 017781 316 --GE-------KGVRRVLEMLREEFELAMALSGCRSLKEITR 348 (366)
Q Consensus 316 --G~-------~gv~~~~~~l~~el~~~m~~~G~~~l~el~~ 348 (366)
|- ..+.+++..+..+|+..|.++|+.++.||+.
T Consensus 425 ~egv~~~v~~~g~~~~~~~~~~~gl~~~~~y~g~~~i~~~~~ 466 (495)
T PTZ00314 425 AQGVSGSVVDKGSVAKLIPYLVKGVKHGMQYIGAHSIPELHE 466 (495)
T ss_pred CCceEEeeecCCcHHHHHHHHHHHHHHHHHhhCCCcHHHHHh
Confidence 00 1288999999999999999999999999987
|
|
| >PLN02826 dihydroorotate dehydrogenase | Back alignment and domain information |
|---|
Probab=99.86 E-value=8.9e-20 Score=181.28 Aligned_cols=119 Identities=28% Similarity=0.450 Sum_probs=97.4
Q ss_pred cCCCEEEEecc--CHHH--------HHcCCcEEEEcCCC-cc----------CCC---CCcc----hHHHHHHHHHHcCC
Q 017781 224 TKLPILVKGVL--TAED--------VQAGAAGIIVSNHG-AR----------QLD---YVPA----TIMALEEVVKATQG 275 (366)
Q Consensus 224 ~~~pv~vK~v~--~~~d--------~~aGad~I~vs~~g-g~----------~~~---~~~~----~~~~l~~i~~~~~~ 275 (366)
.++||++|+.. +.++ .++|+|+|+++|+. ++ +.. +|++ +++.+.++++.+++
T Consensus 261 ~~~Pv~vKlaPdl~~~di~~ia~~a~~~G~dGIi~~NTt~~r~~dl~~~~~~~~~GGlSG~pl~~~sl~~v~~l~~~~~~ 340 (409)
T PLN02826 261 GPPPLLVKIAPDLSKEDLEDIAAVALALGIDGLIISNTTISRPDSVLGHPHADEAGGLSGKPLFDLSTEVLREMYRLTRG 340 (409)
T ss_pred cCCceEEecCCCCCHHHHHHHHHHHHHcCCCEEEEEcccCcCccchhcccccccCCCcCCccccHHHHHHHHHHHHHhCC
Confidence 46899999963 4333 88999999999952 11 111 2222 56788899888877
Q ss_pred CceEEEecCCCCHHHHHHHHHhCcCEEEecHHHHHHhhhcCHHHHHHHHHHHHHHHHHHHHHcCCCChhhhcccc
Q 017781 276 RIPVFLDGGVRRGTDVFKALALGASGIFIGRPVVYSLAAEGEKGVRRVLEMLREEFELAMALSGCRSLKEITRDH 350 (366)
Q Consensus 276 ~i~vi~~GGI~~~~dv~kalalGAd~V~igr~~l~~l~~~G~~gv~~~~~~l~~el~~~m~~~G~~~l~el~~~~ 350 (366)
++|||++|||.+++|++++|.+||++|+++|+++|. |+. ++..+++||.++|...|+++++|+.+..
T Consensus 341 ~ipIIgvGGI~sg~Da~e~i~AGAs~VQv~Ta~~~~----Gp~----~i~~I~~eL~~~l~~~G~~si~e~iG~~ 407 (409)
T PLN02826 341 KIPLVGCGGVSSGEDAYKKIRAGASLVQLYTAFAYE----GPA----LIPRIKAELAACLERDGFKSIQEAVGAD 407 (409)
T ss_pred CCcEEEECCCCCHHHHHHHHHhCCCeeeecHHHHhc----CHH----HHHHHHHHHHHHHHHcCCCCHHHHhCcC
Confidence 899999999999999999999999999999999883 653 7788999999999999999999998753
|
|
| >TIGR00737 nifR3_yhdG putative TIM-barrel protein, nifR3 family | Back alignment and domain information |
|---|
Probab=99.85 E-value=6.9e-20 Score=177.84 Aligned_cols=242 Identities=20% Similarity=0.233 Sum_probs=174.1
Q ss_pred cCcccCCceEecccccccccCChhhHHHHHHHHHcCCceecCCCCCC--------CHHHHhccCC--CceEEEeeecCCH
Q 017781 66 LGFKISMPIMIAPTAMQKMAHPEGEYATARAASAAGTIMTLSSWSTS--------SVEEVASTGP--GIRFFQLYVYKDR 135 (366)
Q Consensus 66 ~g~~l~~Pi~iApm~~~~l~~~~~e~~la~aa~~~G~~~~vs~~~~~--------~~e~i~~~~~--~~~~~Qly~~~d~ 135 (366)
.+..+..|+++|||.+.+ +.++++.++++|..++.+++.+. ....+....+ .|..+||. ..++
T Consensus 2 ~~~~~~~~l~lAPm~~~t------~~~fR~l~~~~g~~~~~temi~~~~l~~~~~~~~~~~~~~~~~~p~i~ql~-g~~~ 74 (319)
T TIGR00737 2 GNIQLKSRVVLAPMAGVT------DSPFRRLVAEYGAGLTVCEMVSSEAIVYDSQRTMRLLDIAEDETPISVQLF-GSDP 74 (319)
T ss_pred CCccCCCCEEecCCCCCC------cHHHHHHHHHHCCCEEEECCEEEhhhhcCCHHHHHHhhcCCccceEEEEEe-CCCH
Confidence 567889999999998765 88999999999988888776431 1112222222 57889997 6788
Q ss_pred HHHHHHHHHHHHcCCCEEEEecCCCCCcchhHHHhhhcCCCCccccccccccccCCCccccchhhHHHhhhccCCCCCHH
Q 017781 136 NVVAQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLTLKNFQGLDLGKMDEANDSGLAAYVAGQIDRSLSWK 215 (366)
Q Consensus 136 ~~~~~~l~ra~~~G~~ai~vtvd~p~~g~r~~d~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~ 215 (366)
+.+.+.+++++++|+++|.+++.||.. .|.+ . +.+..+. .++.+..+
T Consensus 75 ~~~~~aa~~~~~~G~d~IelN~gcP~~-~~~~---~---------------------------~~Gs~l~--~~~~~~~e 121 (319)
T TIGR00737 75 DTMAEAAKINEELGADIIDINMGCPVP-KITK---K---------------------------GAGSALL--RDPDLIGK 121 (319)
T ss_pred HHHHHHHHHHHhCCCCEEEEECCCCHH-HhcC---C---------------------------CccchHh--CCHHHHHH
Confidence 899999999999999999999999842 1110 0 0011111 24556678
Q ss_pred HHHHHHHhcCCCEEEEeccC-------HHH-----HHcCCcEEEEcCCCccCCCCCcchHHHHHHHHHHcCCCceEEEec
Q 017781 216 DVKWLQTITKLPILVKGVLT-------AED-----VQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDG 283 (366)
Q Consensus 216 ~i~~lr~~~~~pv~vK~v~~-------~~d-----~~aGad~I~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~i~vi~~G 283 (366)
.++++|+.+++||.+|.... ..+ .++|+|+|++++....+...+++.++.+.++++.+ ++|||++|
T Consensus 122 i~~~vr~~~~~pv~vKir~g~~~~~~~~~~~a~~l~~~G~d~i~vh~r~~~~~~~~~~~~~~i~~i~~~~--~ipvi~nG 199 (319)
T TIGR00737 122 IVKAVVDAVDIPVTVKIRIGWDDAHINAVEAARIAEDAGAQAVTLHGRTRAQGYSGEANWDIIARVKQAV--RIPVIGNG 199 (319)
T ss_pred HHHHHHhhcCCCEEEEEEcccCCCcchHHHHHHHHHHhCCCEEEEEcccccccCCCchhHHHHHHHHHcC--CCcEEEeC
Confidence 89999999999999997532 122 78899999997643223334567889999999888 79999999
Q ss_pred CCCCHHHHHHHHH-hCcCEEEecHHHHHHh-----h----hcCH----HHHHHHHHHHHHHHHHHHHHcCCC-Chhhhcc
Q 017781 284 GVRRGTDVFKALA-LGASGIFIGRPVVYSL-----A----AEGE----KGVRRVLEMLREEFELAMALSGCR-SLKEITR 348 (366)
Q Consensus 284 GI~~~~dv~kala-lGAd~V~igr~~l~~l-----~----~~G~----~gv~~~~~~l~~el~~~m~~~G~~-~l~el~~ 348 (366)
||++++|+.+++. .|||+||+||+++... . ..|+ ....+.++.+.++++...+..|.. .+..+++
T Consensus 200 gI~~~~da~~~l~~~gad~VmigR~~l~~P~l~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~r~ 279 (319)
T TIGR00737 200 DIFSPEDAKAMLETTGCDGVMIGRGALGNPWLFRQIEQYLTTGKYKPPPTFAEKLDAILRHLQLLADYYGESKGLRIARK 279 (319)
T ss_pred CCCCHHHHHHHHHhhCCCEEEEChhhhhCChHHHHHHHHHhCCCCCCCCCHHHHHHHHHHHHHHHHHHhCcchHHHHHHH
Confidence 9999999999995 7899999999876421 1 1121 134456677778888777777643 4555554
Q ss_pred c
Q 017781 349 D 349 (366)
Q Consensus 349 ~ 349 (366)
.
T Consensus 280 ~ 280 (319)
T TIGR00737 280 H 280 (319)
T ss_pred H
Confidence 4
|
Members of this family show a distant relationship to alpha/beta (TIM) barrel enzymes such as dihydroorotate dehydrogenase and glycolate oxidase. |
| >cd02940 DHPD_FMN Dihydropyrimidine dehydrogenase (DHPD) FMN-binding domain | Back alignment and domain information |
|---|
Probab=99.85 E-value=6.3e-20 Score=176.55 Aligned_cols=211 Identities=23% Similarity=0.293 Sum_probs=149.7
Q ss_pred ccceeEcCcccCCceEecccccccccCChhhHHHHHHHHHcCCceec-CCCCCC-------------------------C
Q 017781 60 DMNTTVLGFKISMPIMIAPTAMQKMAHPEGEYATARAASAAGTIMTL-SSWSTS-------------------------S 113 (366)
Q Consensus 60 d~st~l~g~~l~~Pi~iApm~~~~l~~~~~e~~la~aa~~~G~~~~v-s~~~~~-------------------------~ 113 (366)
|++|+++|++|.+||++|+=.. +.+....+.+...|+++++ .|.... .
T Consensus 1 ~l~~~~~Gl~l~nPi~~aag~~------~~~~~~~~~~~~~G~Gavv~kti~~~~~~~gn~~pr~~~~~~~~~n~~g~~n 74 (299)
T cd02940 1 DLSVTFCGIKFPNPFGLASAPP------TTSYPMIRRAFEAGWGGAVTKTLGLDKDIVTNVSPRIARLRTSGRGQIGFNN 74 (299)
T ss_pred CCceEECCEEcCCCCEeCCcCC------CCCHHHHHHHHHhCCCEEEeccccCcCCCCCCCCCeEEEeCCCchhcccccC
Confidence 6899999999999999998211 1244555555566776654 221110 0
Q ss_pred --------HHH----Hh---ccCC-CceEEEeeecCCHHHHHHHHHHHHHcCCCEEEEecCCCCCcchhHHHhhhcCCCC
Q 017781 114 --------VEE----VA---STGP-GIRFFQLYVYKDRNVVAQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFTLPP 177 (366)
Q Consensus 114 --------~e~----i~---~~~~-~~~~~Qly~~~d~~~~~~~l~ra~~~G~~ai~vtvd~p~~g~r~~d~~~~~~~p~ 177 (366)
++. +. ...+ .|.+.|++...+.+.+.+.++++++.|++++.+|+.||....+
T Consensus 75 ~e~~s~~~~~~~~~~~~~~~~~~~~~p~i~si~G~~~~~~~~~~a~~~~~~gad~ielN~sCP~~~~~------------ 142 (299)
T cd02940 75 IELISEKPLEYWLKEIRELKKDFPDKILIASIMCEYNKEDWTELAKLVEEAGADALELNFSCPHGMPE------------ 142 (299)
T ss_pred CccccccCHHHHHHHHHHHHhhCCCCeEEEEecCCCCHHHHHHHHHHHHhcCCCEEEEECCCCCCCCC------------
Confidence 111 11 1122 4678898744488888889999988999999999999964100
Q ss_pred ccccccccccccCCCccccchhhHHHhhhccCCCCCHHHHHHHHHhcCCCEEEEeccCHHH--------HHcCCcEEEEc
Q 017781 178 FLTLKNFQGLDLGKMDEANDSGLAAYVAGQIDRSLSWKDVKWLQTITKLPILVKGVLTAED--------VQAGAAGIIVS 249 (366)
Q Consensus 178 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~i~~lr~~~~~pv~vK~v~~~~d--------~~aGad~I~vs 249 (366)
+. .+..+. .+++...+.++++|+.+++||+||...+.++ .++|+|+|+++
T Consensus 143 ----~~----------------~G~~l~--~~~~~~~~iv~~v~~~~~~Pv~vKl~~~~~~~~~~a~~~~~~Gadgi~~~ 200 (299)
T cd02940 143 ----RG----------------MGAAVG--QDPELVEEICRWVREAVKIPVIAKLTPNITDIREIARAAKEGGADGVSAI 200 (299)
T ss_pred ----CC----------------Cchhhc--cCHHHHHHHHHHHHHhcCCCeEEECCCCchhHHHHHHHHHHcCCCEEEEe
Confidence 00 001111 2455566789999999999999998865432 88999999988
Q ss_pred CCCcc---------------------CCCCCcc----hHHHHHHHHHHcCCCceEEEecCCCCHHHHHHHHHhCcCEEEe
Q 017781 250 NHGAR---------------------QLDYVPA----TIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFI 304 (366)
Q Consensus 250 ~~gg~---------------------~~~~~~~----~~~~l~~i~~~~~~~i~vi~~GGI~~~~dv~kalalGAd~V~i 304 (366)
|+... +..+|++ +++.+.++++.+.+++|||++|||++++|+.++|.+|||+||+
T Consensus 201 Nt~~~~~~id~~~~~~~~~~~~~~~~gg~sG~a~~p~~l~~v~~~~~~~~~~ipIig~GGI~~~~da~~~l~aGA~~V~i 280 (299)
T cd02940 201 NTVNSLMGVDLDGTPPAPGVEGKTTYGGYSGPAVKPIALRAVSQIARAPEPGLPISGIGGIESWEDAAEFLLLGASVVQV 280 (299)
T ss_pred cccccccccccccCCccccccCCCCcCcccCCCcchHHHHHHHHHHHhcCCCCcEEEECCCCCHHHHHHHHHcCCChheE
Confidence 75421 1112332 4788999998886679999999999999999999999999999
Q ss_pred cHHHHH
Q 017781 305 GRPVVY 310 (366)
Q Consensus 305 gr~~l~ 310 (366)
||.+++
T Consensus 281 ~ta~~~ 286 (299)
T cd02940 281 CTAVMN 286 (299)
T ss_pred ceeecc
Confidence 999876
|
DHPD catalyzes the first step in pyrimidine degradation: the NADPH-dependent reduction of uracil and thymine to the corresponding 5,6-dihydropyrimidines. DHPD contains two FAD, two FMN, and eight [4Fe-4S] clusters, arranged in two electron transfer chains that pass the dimer interface twice. Two of the Fe-S clusters show a hitherto unobserved coordination involving a glutamine residue. |
| >PRK10550 tRNA-dihydrouridine synthase C; Provisional | Back alignment and domain information |
|---|
Probab=99.85 E-value=9.7e-20 Score=175.83 Aligned_cols=236 Identities=19% Similarity=0.199 Sum_probs=165.5
Q ss_pred CceEecccccccccCChhhHHHHHHHHHcC-CceecCCCCCC--------CHHHHhc------cC--CCceEEEeeecCC
Q 017781 72 MPIMIAPTAMQKMAHPEGEYATARAASAAG-TIMTLSSWSTS--------SVEEVAS------TG--PGIRFFQLYVYKD 134 (366)
Q Consensus 72 ~Pi~iApm~~~~l~~~~~e~~la~aa~~~G-~~~~vs~~~~~--------~~e~i~~------~~--~~~~~~Qly~~~d 134 (366)
+|+++|||++.+ +.++++.+.++| ...+.++|.+. ....+.+ .. +.|..+||+ +.+
T Consensus 1 ~~~~lAPMag~t------d~~fR~l~~~~g~~~~~~temvs~~~~~~~~~~~~~~~~~~~~~~~~~~e~p~~vQl~-g~~ 73 (312)
T PRK10550 1 MRVLLAPMEGVL------DSLVRELLTEVNDYDLCITEFLRVVDQLLPVKVFHRLCPELHNASRTPSGTLVRIQLL-GQY 73 (312)
T ss_pred CCeEEECCCCCc------CHHHHHHHHHhCCCCEEEeCCEEechhcccchhHHHHhHHhcccCCCCCCCcEEEEec-cCC
Confidence 589999998876 889999999999 78888887432 1111111 11 267899998 689
Q ss_pred HHHHHHHHHHHHHcCCCEEEEecCCCCCcchhHHHhhhcCCCCccccccccccccCCCccccchhhHHHhhhccCCCCCH
Q 017781 135 RNVVAQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLTLKNFQGLDLGKMDEANDSGLAAYVAGQIDRSLSW 214 (366)
Q Consensus 135 ~~~~~~~l~ra~~~G~~ai~vtvd~p~~g~r~~d~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~ 214 (366)
++.+.+.++++++.|++.|.||+.||.. + +. + .+.+..++ .++.+..
T Consensus 74 p~~~~~aA~~~~~~g~d~IdiN~GCP~~--------------~-v~-~---------------~g~Gs~Ll--~~~~~~~ 120 (312)
T PRK10550 74 PQWLAENAARAVELGSWGVDLNCGCPSK--------------T-VN-G---------------SGGGATLL--KDPELIY 120 (312)
T ss_pred HHHHHHHHHHHHHcCCCEEEEeCCCCch--------------H-Hh-c---------------CCCchHhh--cCHHHHH
Confidence 9999999999999999999999999863 0 00 0 01122223 2566677
Q ss_pred HHHHHHHHhc--CCCEEEEeccCH---HH--------HHcCCcEEEEcCCCccCCCCCcc-hHHHHHHHHHHcCCCceEE
Q 017781 215 KDVKWLQTIT--KLPILVKGVLTA---ED--------VQAGAAGIIVSNHGARQLDYVPA-TIMALEEVVKATQGRIPVF 280 (366)
Q Consensus 215 ~~i~~lr~~~--~~pv~vK~v~~~---~d--------~~aGad~I~vs~~gg~~~~~~~~-~~~~l~~i~~~~~~~i~vi 280 (366)
+.++.+|+.+ ++||.||..... ++ .++|+|.|+|+++...+...+++ .++.+.++++.+ ++|||
T Consensus 121 eiv~avr~~~~~~~pVsvKiR~g~~~~~~~~~~a~~l~~~Gvd~i~Vh~Rt~~~~y~g~~~~~~~i~~ik~~~--~iPVi 198 (312)
T PRK10550 121 QGAKAMREAVPAHLPVTVKVRLGWDSGERKFEIADAVQQAGATELVVHGRTKEDGYRAEHINWQAIGEIRQRL--TIPVI 198 (312)
T ss_pred HHHHHHHHhcCCCcceEEEEECCCCCchHHHHHHHHHHhcCCCEEEECCCCCccCCCCCcccHHHHHHHHhhc--CCcEE
Confidence 8899999988 499999976533 22 88999999998755445555654 789999999888 79999
Q ss_pred EecCCCCHHHHHHHHH-hCcCEEEecHHH-----HHHhhhcCH--HHHHHHHHHHHHHHHHHHHHcCC-CChhhhccc
Q 017781 281 LDGGVRRGTDVFKALA-LGASGIFIGRPV-----VYSLAAEGE--KGVRRVLEMLREEFELAMALSGC-RSLKEITRD 349 (366)
Q Consensus 281 ~~GGI~~~~dv~kala-lGAd~V~igr~~-----l~~l~~~G~--~gv~~~~~~l~~el~~~m~~~G~-~~l~el~~~ 349 (366)
++|||.|++|+.++++ .|||+|||||++ ++.-...|. ...++.++.+.+.++......+. ..+.++++.
T Consensus 199 ~nGdI~t~~da~~~l~~~g~DgVmiGRg~l~nP~lf~~~~~g~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~rk~ 276 (312)
T PRK10550 199 ANGEIWDWQSAQQCMAITGCDAVMIGRGALNIPNLSRVVKYNEPRMPWPEVVALLQKYTRLEKQGDTGLYHVARIKQW 276 (312)
T ss_pred EeCCcCCHHHHHHHHhccCCCEEEEcHHhHhCcHHHHHhhcCCCCCCHHHHHHHHHHHHHHHHhcCcchhHHHHHHHH
Confidence 9999999999999997 689999999965 443222221 12344555566555432222221 234455554
|
|
| >PF01645 Glu_synthase: Conserved region in glutamate synthase; InterPro: IPR002932 Ferredoxin-dependent glutamate synthases have been implicated in a number of functions including photorespiration in Arabidopsis where they may also play a role in primary nitrogen assimilation in roots [] | Back alignment and domain information |
|---|
Probab=99.85 E-value=1.4e-20 Score=183.63 Aligned_cols=245 Identities=25% Similarity=0.311 Sum_probs=147.3
Q ss_pred cccCCceEecccccccccCChhhHHHHHHHHHcCCceecCCCCCCCHHHHhccCCCce-EEEeeecCCHHHHHHHHHHHH
Q 017781 68 FKISMPIMIAPTAMQKMAHPEGEYATARAASAAGTIMTLSSWSTSSVEEVASTGPGIR-FFQLYVYKDRNVVAQLVRRAE 146 (366)
Q Consensus 68 ~~l~~Pi~iApm~~~~l~~~~~e~~la~aa~~~G~~~~vs~~~~~~~e~i~~~~~~~~-~~Qly~~~d~~~~~~~l~ra~ 146 (366)
.++..||++++|++++++ ++.-.++|++++..|+.+..++.. .+.++.... ... ++|+- ........+.++
T Consensus 62 ~~l~~p~~is~MS~GaLS-~~a~~Ala~ga~~~G~~~ntGEGg-~~~~~~~~~--~~~~I~Q~~-sg~fGv~~~~l~--- 133 (368)
T PF01645_consen 62 LELSIPFMISAMSYGALS-EEAKEALAKGANMAGTASNTGEGG-ELPEERKAA--KDLRIKQIA-SGRFGVRPEYLK--- 133 (368)
T ss_dssp HHHHTTEEEEEB-CTTC--HHHHHHHHHHHHHCT-EEEETTT----GGGCSB---TTSSEEEE--TT-TT--HHHHC---
T ss_pred hhheeeeecccCChhhcC-HHHHHHHHHHHHHhCceEecCCCC-CCHHHhccc--CCceEEEcC-CCCCCCCHHHhc---
Confidence 457899999999998765 566789999999999998888864 344444332 234 88964 333444444443
Q ss_pred HcCCCEEEEecCC---CCCcchhHHHhhhcCCCC-cccc--ccccccccCCCccccchhhHHHhhhccCCCC-C---H-H
Q 017781 147 RAGFKAIALTVDT---PRLGRREADIKNRFTLPP-FLTL--KNFQGLDLGKMDEANDSGLAAYVAGQIDRSL-S---W-K 215 (366)
Q Consensus 147 ~~G~~ai~vtvd~---p~~g~r~~d~~~~~~~p~-~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~-~---~-~ 215 (366)
.++.|-|-+.. |..|.. +|. +++. +.+..+ ......+++...+++ + + +
T Consensus 134 --~a~~iEIKigQGAKpG~GG~---------Lp~~KV~~~ia~~R~~----------~~g~~~iSP~~h~di~s~edl~~ 192 (368)
T PF01645_consen 134 --QADMIEIKIGQGAKPGEGGH---------LPGEKVTEEIARIRGV----------PPGVDLISPPPHHDIYSIEDLAQ 192 (368)
T ss_dssp --C-SEEEEE---TTSTTT--E---------E-GGG--HHHHHHHTS-----------TT--EE--SS-TT-SSHHHHHH
T ss_pred --CCCeEEEEEecCccccCcce---------echhhchHHHHHHhCC----------CCCCccccCCCCCCcCCHHHHHH
Confidence 45677776653 221110 110 0100 000000 000111222222222 2 2 3
Q ss_pred HHHHHHHhc-CCCEEEEeccC--HHH-----HHcCCcEEEEcCCCc-cC-------CCCCcchHHHHHHHHHHc-----C
Q 017781 216 DVKWLQTIT-KLPILVKGVLT--AED-----VQAGAAGIIVSNHGA-RQ-------LDYVPATIMALEEVVKAT-----Q 274 (366)
Q Consensus 216 ~i~~lr~~~-~~pv~vK~v~~--~~d-----~~aGad~I~vs~~gg-~~-------~~~~~~~~~~l~~i~~~~-----~ 274 (366)
.|++||+.. ++||.+|.+.. .++ .++|+|+|++++++| +. .+.|.|....|.++.+.+ +
T Consensus 193 ~I~~Lr~~~~~~pVgvKl~~~~~~~~~~~~~~~ag~D~ItIDG~~GGTGAap~~~~d~~GlP~~~~l~~a~~~L~~~glr 272 (368)
T PF01645_consen 193 LIEELRELNPGKPVGVKLVAGRGVEDIAAGAAKAGADFITIDGAEGGTGAAPLTSMDHVGLPTEYALARAHQALVKNGLR 272 (368)
T ss_dssp HHHHHHHH-TTSEEEEEEE-STTHHHHHHHHHHTT-SEEEEE-TT---SSEECCHHHHC---HHHHHHHHHHHHHCTT-C
T ss_pred HHHHHHhhCCCCcEEEEECCCCcHHHHHHhhhhccCCEEEEeCCCCCCCCCchhHHhhCCCcHHHHHHHHHHHHHHcCCC
Confidence 589999998 89999998742 233 899999999999754 32 246788888898888775 4
Q ss_pred CCceEEEecCCCCHHHHHHHHHhCcCEEEecHHHHHHhhhc-----------------------------CHHHHHHHHH
Q 017781 275 GRIPVFLDGGVRRGTDVFKALALGASGIFIGRPVVYSLAAE-----------------------------GEKGVRRVLE 325 (366)
Q Consensus 275 ~~i~vi~~GGI~~~~dv~kalalGAd~V~igr~~l~~l~~~-----------------------------G~~gv~~~~~ 325 (366)
+++.|+++||++++.|++|||+||||+|.+||++|+++.|. +++.|.+++.
T Consensus 273 ~~V~Li~sGgl~t~~dv~kalaLGAD~v~igt~~liAlGC~~~~~C~~~~CP~Giatq~~~l~~~l~~~~~~~~v~n~~~ 352 (368)
T PF01645_consen 273 DRVSLIASGGLRTGDDVAKALALGADAVYIGTAALIALGCIQCRKCHTGTCPVGIATQDPKLRKRLDVEEKAERVANFLK 352 (368)
T ss_dssp CCSEEEEESS--SHHHHHHHHHCT-SEEE-SHHHHHHCT--S---CCCT--TTSSS---CCHH--CT----HHHHHHHHH
T ss_pred CceEEEEeCCccCHHHHHHHHhcCCCeeEecchhhhhcchHHHhcccCCCCCceeeecCcccccccccccHHHHHHHHHH
Confidence 68999999999999999999999999999999999998663 3577999999
Q ss_pred HHHHHHHHHHHHcCCC
Q 017781 326 MLREEFELAMALSGCR 341 (366)
Q Consensus 326 ~l~~el~~~m~~~G~~ 341 (366)
.+.+|++..|+.+|.+
T Consensus 353 ~~~~el~~~~~a~G~~ 368 (368)
T PF01645_consen 353 ACAEELREILAALGKR 368 (368)
T ss_dssp HHHHHHHHHHHHHT-S
T ss_pred HHHHHHHHHHHHhCCC
Confidence 9999999999999964
|
This region is expressed as a seperate subunit in the glutamate synthase alpha subunit from archaebacteria, or part of a large multidomain enzyme in other organisms. The aligned region of these proteins contains a putative FMN binding site and Fe-S cluster.; GO: 0015930 glutamate synthase activity, 0016638 oxidoreductase activity, acting on the CH-NH2 group of donors, 0006537 glutamate biosynthetic process, 0055114 oxidation-reduction process; PDB: 1EA0_A 2VDC_E 1OFE_A 1LLW_A 1OFD_A 1LLZ_A 1LM1_A. |
| >TIGR01302 IMP_dehydrog inosine-5'-monophosphate dehydrogenase | Back alignment and domain information |
|---|
Probab=99.85 E-value=6.2e-20 Score=185.74 Aligned_cols=298 Identities=24% Similarity=0.353 Sum_probs=186.0
Q ss_pred cccceeeeccccC-CCCCCccceeEc-CcccCCceEecccccccccCChhhHHHHHHHHHcCCceecCCCCCCCHHHHhc
Q 017781 42 AFSRILFRPRILI-DVSKIDMNTTVL-GFKISMPIMIAPTAMQKMAHPEGEYATARAASAAGTIMTLSSWSTSSVEEVAS 119 (366)
Q Consensus 42 ~f~~i~l~pr~l~-~~~~vd~st~l~-g~~l~~Pi~iApm~~~~l~~~~~e~~la~aa~~~G~~~~vs~~~~~~~e~i~~ 119 (366)
.|||+.|+|.... ..+++|++|.+- +.+++.|++.|||...+ |.+++.+.++.|...++.. ++++|+..+
T Consensus 3 t~ddv~l~p~~~~~~~~~~~~~~~~~~~~~l~~p~~s~~mdtvT------e~ema~~ma~~gg~GvI~~--n~~~e~q~~ 74 (450)
T TIGR01302 3 TFDDVLLLPGFIDVEPDDVDLSTRITRNIKLNIPILSSPMDTVT------ESRMAIAMAREGGIGVIHR--NMSIEEQAE 74 (450)
T ss_pred CccceEecccccccCccccccccccccccCcCCCeeecCCCccC------HHHHHHHHHhcCCCceeec--CCCHHHHHH
Confidence 5999999998653 456899999987 78999999999996543 7788888888887777753 455543322
Q ss_pred ----cC--CCceEEEeeecCCHHHHHHHHHHHHHcCCCEEEEecCCC----CCc-chhHHHh-------------h--h-
Q 017781 120 ----TG--PGIRFFQLYVYKDRNVVAQLVRRAERAGFKAIALTVDTP----RLG-RREADIK-------------N--R- 172 (366)
Q Consensus 120 ----~~--~~~~~~Qly~~~d~~~~~~~l~ra~~~G~~ai~vtvd~p----~~g-~r~~d~~-------------~--~- 172 (366)
.. .....-++..-.......+.++...+.++..+.|.=+.. ..| -..+|+. . .
T Consensus 75 ~V~~Vk~~~~~~~~~~vtl~~~~tv~eal~~m~~~~~s~lpVvd~~~~~~~lvGIVt~rDL~~~~~~~~~V~dvm~~~~~ 154 (450)
T TIGR01302 75 QVKRVKRAENGIISDPVTISPETTVADVLELMERKGISGIPVVEDGDMTGKLVGIITKRDIRFVKDKGKPVSEVMTREEV 154 (450)
T ss_pred HHhhhccccCceecCceEeCCCCCHHHHHHHHHHcCCCEEEEEeCCCCCCeEEEEEEHHHHhhhhcCCCCHHHhhCCCCC
Confidence 11 111001111111223344556666667777666543220 000 0011111 0 0
Q ss_pred cCCCCcccccc------------------------------cc-ccccCCCcc---c------c----c---hhhHHHhh
Q 017781 173 FTLPPFLTLKN------------------------------FQ-GLDLGKMDE---A------N----D---SGLAAYVA 205 (366)
Q Consensus 173 ~~~p~~~~~~~------------------------------~~-~~~~~~~~~---~------~----~---~~~~~~~~ 205 (366)
..++....+.. +. .+..+...+ . . . ......+.
T Consensus 155 ~~V~~~~sl~eal~~m~~~~~~~lpVVDe~G~lvGiVT~~DIl~~~~~~~~~~d~~g~l~V~aav~~~~~~~~r~~~L~~ 234 (450)
T TIGR01302 155 ITVPEGIDLEEALKVLHEHRIEKLPVVDKNGELVGLITMKDIVKRRKFPHASKDENGRLIVGAAVGTREFDKERAEALVK 234 (450)
T ss_pred EEECCCCcHHHHHHHHHHcCCCeEEEEcCCCcEEEEEEhHHhhhcccCCcceEeCCCCEEEEEEecCchhHHHHHHHHHH
Confidence 00000000000 00 000000000 0 0 0 00000111
Q ss_pred ----------hccCCCCCHHHHHHHHHhc-CCCEEEEeccCHHH----HHcCCcEEEEcCCCcc-----C-CCCCcchHH
Q 017781 206 ----------GQIDRSLSWKDVKWLQTIT-KLPILVKGVLTAED----VQAGAAGIIVSNHGAR-----Q-LDYVPATIM 264 (366)
Q Consensus 206 ----------~~~d~~~~~~~i~~lr~~~-~~pv~vK~v~~~~d----~~aGad~I~vs~~gg~-----~-~~~~~~~~~ 264 (366)
.+++....++.|+++|+.+ ++||+++.+.+.++ .++|||+|.|+.+.|. . ..++.|+++
T Consensus 235 aG~d~I~vd~a~g~~~~~~~~i~~i~~~~~~~~vi~G~v~t~~~a~~l~~aGad~i~vg~g~G~~~~t~~~~~~g~p~~~ 314 (450)
T TIGR01302 235 AGVDVIVIDSSHGHSIYVIDSIKEIKKTYPDLDIIAGNVATAEQAKALIDAGADGLRVGIGPGSICTTRIVAGVGVPQIT 314 (450)
T ss_pred hCCCEEEEECCCCcHhHHHHHHHHHHHhCCCCCEEEEeCCCHHHHHHHHHhCCCEEEECCCCCcCCccceecCCCccHHH
Confidence 1112233457799999995 89999999999987 9999999999866552 1 246888999
Q ss_pred HHHHHHHHcC-CCceEEEecCCCCHHHHHHHHHhCcCEEEecHHHH--------------------HHhhh---------
Q 017781 265 ALEEVVKATQ-GRIPVFLDGGVRRGTDVFKALALGASGIFIGRPVV--------------------YSLAA--------- 314 (366)
Q Consensus 265 ~l~~i~~~~~-~~i~vi~~GGI~~~~dv~kalalGAd~V~igr~~l--------------------~~l~~--------- 314 (366)
++.++++++. .++|||++|||+++.|++|||++||++||+|+.|. ++++.
T Consensus 315 ~i~~~~~~~~~~~vpviadGGi~~~~di~kAla~GA~~V~~G~~~a~~~e~pg~~~~~~g~~~k~yrgm~s~~a~~~~~~ 394 (450)
T TIGR01302 315 AVYDVAEYAAQSGIPVIADGGIRYSGDIVKALAAGADAVMLGSLLAGTTESPGEYEIINGRRYKQYRGMGSLGAMTKGSS 394 (450)
T ss_pred HHHHHHHHHhhcCCeEEEeCCCCCHHHHHHHHHcCCCEEEECchhhcCCcCCCceEEECCEEEEEEeccchHHHHhcccc
Confidence 9999987653 37999999999999999999999999999999883 11110
Q ss_pred ---------------cCH-------HHHHHHHHHHHHHHHHHHHHcCCCChhhhc
Q 017781 315 ---------------EGE-------KGVRRVLEMLREEFELAMALSGCRSLKEIT 347 (366)
Q Consensus 315 ---------------~G~-------~gv~~~~~~l~~el~~~m~~~G~~~l~el~ 347 (366)
+|- ..|.+++..+...|+..|.++|+.++.||+
T Consensus 395 ~ry~~~~~~~~~~~~egv~~~~~~~g~~~~~~~~~~~g~~~~~~~~g~~~~~~~~ 449 (450)
T TIGR01302 395 DRYLQDENKTKKFVPEGVEGAVPYKGSVLELLPQLVGGLKSGMGYVGARSIDELR 449 (450)
T ss_pred ccccccccccccccCCceEEcccccCcHHHHHHHHHHHHHHhhhccCcCcHHHHh
Confidence 011 137889999999999999999999999986
|
This model describes a rather tightly conserved cluster of IMP dehydrogenase sequences, many of which are characterized. The model excludes two related families of proteins proposed also to be IMP dehydrogenases, but without characterized members. These are related families are the subject of separate models. |
| >PRK02506 dihydroorotate dehydrogenase 1A; Reviewed | Back alignment and domain information |
|---|
Probab=99.84 E-value=2.1e-19 Score=173.56 Aligned_cols=237 Identities=18% Similarity=0.183 Sum_probs=164.7
Q ss_pred ccceeEcCcccCCceEecccccccccCChhhHHHHHHHHHcCCceec-CCCCCC--------------------------
Q 017781 60 DMNTTVLGFKISMPIMIAPTAMQKMAHPEGEYATARAASAAGTIMTL-SSWSTS-------------------------- 112 (366)
Q Consensus 60 d~st~l~g~~l~~Pi~iApm~~~~l~~~~~e~~la~aa~~~G~~~~v-s~~~~~-------------------------- 112 (366)
|++|+++|.+|++||++|+=... .+.+..+.+.+.|.++++ .|....
T Consensus 1 dL~~~~~Gl~l~NPv~~AsG~~~------~~~e~~~~~~~~g~Gavv~ktit~~p~~gn~~pr~~~~~~~~~N~~Gl~n~ 74 (310)
T PRK02506 1 STSTQIAGFKFDNCLMNAAGVYC------MTKEELEEVEASAAGAFVTKSATLEPRPGNPEPRYADTPLGSINSMGLPNL 74 (310)
T ss_pred CCceEECCEECCCCCEeCCCCCC------CCHHHHHHHHHcCCcEEEeCccCCCCCCCCCCCeEEECcchhhccCCCCCc
Confidence 68999999999999999983211 244556668888888775 332111
Q ss_pred CHH----HHhc---cCC-CceEEEeeecCCHHHHHHHHHHHHHcC-CCEEEEecCCCCCcchhHHHhhhcCCCCcccccc
Q 017781 113 SVE----EVAS---TGP-GIRFFQLYVYKDRNVVAQLVRRAERAG-FKAIALTVDTPRLGRREADIKNRFTLPPFLTLKN 183 (366)
Q Consensus 113 ~~e----~i~~---~~~-~~~~~Qly~~~d~~~~~~~l~ra~~~G-~~ai~vtvd~p~~g~r~~d~~~~~~~p~~~~~~~ 183 (366)
.++ ++.+ ..+ .|.+.++. ..+.+...+.+++++++| ++++.+|+.||..... .
T Consensus 75 g~~~~~~~i~~~~~~~~~~pvI~Si~-G~~~~~~~~~a~~~~~~g~ad~iElN~ScPn~~~~----------------~- 136 (310)
T PRK02506 75 GFDYYLDYVLELQKKGPNKPHFLSVV-GLSPEETHTILKKIQASDFNGLVELNLSCPNVPGK----------------P- 136 (310)
T ss_pred CHHHHHHHHHHHHhhcCCCCEEEEEE-eCcHHHHHHHHHHHhhcCCCCEEEEECCCCCCCCc----------------c-
Confidence 111 1111 111 34555654 455666677888888887 8899999998853100 0
Q ss_pred ccccccCCCccccchhhHHHhhhccCCCCCHHHHHHHHHhcCCCEEEEeccCHH--H--------HHcCCcEEEEcCCCc
Q 017781 184 FQGLDLGKMDEANDSGLAAYVAGQIDRSLSWKDVKWLQTITKLPILVKGVLTAE--D--------VQAGAAGIIVSNHGA 253 (366)
Q Consensus 184 ~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~i~~lr~~~~~pv~vK~v~~~~--d--------~~aGad~I~vs~~gg 253 (366)
.+ ..|++...+.++++|+.+++||++|...+.+ + .+.|+++|...|.-|
T Consensus 137 ------------------~~---g~d~~~~~~i~~~v~~~~~~Pv~vKlsp~~~~~~~a~~~~~~~~~g~~~i~~~nt~~ 195 (310)
T PRK02506 137 ------------------QI---AYDFETTEQILEEVFTYFTKPLGVKLPPYFDIVHFDQAAAIFNKFPLAFVNCINSIG 195 (310)
T ss_pred ------------------cc---ccCHHHHHHHHHHHHHhcCCccEEecCCCCCHHHHHHHHHHhCcCceEEEEEeccCC
Confidence 00 0133345677999999999999999875432 1 355778777666311
Q ss_pred ----------cC-C-----C---CCc----chHHHHHHHHHHcCCCceEEEecCCCCHHHHHHHHHhCcCEEEecHHHHH
Q 017781 254 ----------RQ-L-----D---YVP----ATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFIGRPVVY 310 (366)
Q Consensus 254 ----------~~-~-----~---~~~----~~~~~l~~i~~~~~~~i~vi~~GGI~~~~dv~kalalGAd~V~igr~~l~ 310 (366)
+. . . +|+ -.+..+.++++.++.++|||++|||.+++|++++|.+||++||+++++++
T Consensus 196 ~~~~iD~~~~~~~~~~~~~~GGlSG~~i~p~al~~v~~~~~~~~~~ipIig~GGI~s~~da~e~i~aGA~~Vqv~ta~~~ 275 (310)
T PRK02506 196 NGLVIDPEDETVVIKPKNGFGGIGGDYIKPTALANVRAFYQRLNPSIQIIGTGGVKTGRDAFEHILCGASMVQVGTALHK 275 (310)
T ss_pred CceEEecCCCCccccCCCCCCcCCchhccHHHHHHHHHHHHhcCCCCCEEEECCCCCHHHHHHHHHcCCCHHhhhHHHHH
Confidence 10 0 1 122 24566777777776689999999999999999999999999999999987
Q ss_pred HhhhcCHHHHHHHHHHHHHHHHHHHHHcCCCChhhhccc
Q 017781 311 SLAAEGEKGVRRVLEMLREEFELAMALSGCRSLKEITRD 349 (366)
Q Consensus 311 ~l~~~G~~gv~~~~~~l~~el~~~m~~~G~~~l~el~~~ 349 (366)
. |+ .++..+.+||+.+|...|+++++|+++.
T Consensus 276 ~----gp----~~~~~i~~~L~~~l~~~g~~si~e~~G~ 306 (310)
T PRK02506 276 E----GP----AVFERLTKELKAIMAEKGYQSLEDFRGK 306 (310)
T ss_pred h----Ch----HHHHHHHHHHHHHHHHhCCCCHHHHhCh
Confidence 3 54 3677899999999999999999999873
|
|
| >TIGR01303 IMP_DH_rel_1 IMP dehydrogenase family protein | Back alignment and domain information |
|---|
Probab=99.84 E-value=2.1e-19 Score=182.00 Aligned_cols=137 Identities=26% Similarity=0.351 Sum_probs=112.7
Q ss_pred CHHHHHHHHHhc-CCCEEEEeccCHHH----HHcCCcEEEEcCCCccC------CCCCcchHHHHHHHHHHcCC-CceEE
Q 017781 213 SWKDVKWLQTIT-KLPILVKGVLTAED----VQAGAAGIIVSNHGARQ------LDYVPATIMALEEVVKATQG-RIPVF 280 (366)
Q Consensus 213 ~~~~i~~lr~~~-~~pv~vK~v~~~~d----~~aGad~I~vs~~gg~~------~~~~~~~~~~l~~i~~~~~~-~i~vi 280 (366)
..+.++++|+.+ ++||++-.+.+.+. .++|||+|.|+..+|+. ..+|.+++..+.+++++... .+|||
T Consensus 253 ~~~~i~~i~~~~~~~~vi~g~~~t~~~~~~l~~~G~d~i~vg~g~Gs~~ttr~~~~~g~~~~~a~~~~~~~~~~~~~~vi 332 (475)
T TIGR01303 253 MISAIKAVRALDLGVPIVAGNVVSAEGVRDLLEAGANIIKVGVGPGAMCTTRMMTGVGRPQFSAVLECAAEARKLGGHVW 332 (475)
T ss_pred HHHHHHHHHHHCCCCeEEEeccCCHHHHHHHHHhCCCEEEECCcCCccccCccccCCCCchHHHHHHHHHHHHHcCCcEE
Confidence 456799999987 79999977888887 99999999999887752 34688899888888765432 69999
Q ss_pred EecCCCCHHHHHHHHHhCcCEEEecHHHH---------------------HHhhh-----------------------cC
Q 017781 281 LDGGVRRGTDVFKALALGASGIFIGRPVV---------------------YSLAA-----------------------EG 316 (366)
Q Consensus 281 ~~GGI~~~~dv~kalalGAd~V~igr~~l---------------------~~l~~-----------------------~G 316 (366)
++|||+++.|++|||++||++||+|+.|- ++++. +|
T Consensus 333 adGgi~~~~di~kala~GA~~vm~g~~~ag~~espg~~~~~~~g~~~k~yrGmgs~~a~~~~~~~~ry~~~~~~~~v~eG 412 (475)
T TIGR01303 333 ADGGVRHPRDVALALAAGASNVMVGSWFAGTYESPGDLMRDRDGRPYKESFGMASKRAVVARTGADNAFDRARKALFEEG 412 (475)
T ss_pred EeCCCCCHHHHHHHHHcCCCEEeechhhcccccCCCceEEeECCEEEEEEecccCHHHHhhccccchhhhhhccccccCc
Confidence 99999999999999999999999999871 11110 12
Q ss_pred HHH-----------HHHHHHHHHHHHHHHHHHcCCCChhhhccc
Q 017781 317 EKG-----------VRRVLEMLREEFELAMALSGCRSLKEITRD 349 (366)
Q Consensus 317 ~~g-----------v~~~~~~l~~el~~~m~~~G~~~l~el~~~ 349 (366)
-+| +.+++..+...|+..|.++|+.++.||+..
T Consensus 413 v~~~~~~~~~~~g~~~~~i~~~~~gl~s~~~y~g~~~i~~~~~~ 456 (475)
T TIGR01303 413 ISTSRMGLDPDRGGVEDLIDHIISGVRSSCTYAGASSLEEFHER 456 (475)
T ss_pred eecccccccCCCCCHHHHHHHHHHHHHHHhhhcCCCcHHHHHhC
Confidence 222 778899999999999999999999999866
|
This model represents a family of proteins, often annotated as a putative IMP dehydrogenase, related to IMP dehydrogenase and GMP reductase and restricted to the high GC Gram-positive bacteria. All species in which a member is found so far (Corynebacterium glutamicum, Mycobacterium tuberculosis, Streptomyces coelicolor, etc.) also have IMP dehydrogenase as described by TIGRFAMs entry TIGR01302. |
| >PRK08318 dihydropyrimidine dehydrogenase subunit B; Validated | Back alignment and domain information |
|---|
Probab=99.84 E-value=2.6e-19 Score=180.08 Aligned_cols=244 Identities=20% Similarity=0.262 Sum_probs=171.6
Q ss_pred CccceeEcCcccCCceEecccccccccCChhhHHHHHHHHHcCCceec-CCCC----CC---------------------
Q 017781 59 IDMNTTVLGFKISMPIMIAPTAMQKMAHPEGEYATARAASAAGTIMTL-SSWS----TS--------------------- 112 (366)
Q Consensus 59 vd~st~l~g~~l~~Pi~iApm~~~~l~~~~~e~~la~aa~~~G~~~~v-s~~~----~~--------------------- 112 (366)
.|++|+++|++|.+||++|+=. +. +....+.+.. +.|+++++ .|.. +.
T Consensus 2 ~~L~~~~~Gl~l~nPv~~aag~---~~--~~~~~~~~~~-~~g~Gavv~kti~~~~gn~~~pr~~~~~~~~~~~~g~~n~ 75 (420)
T PRK08318 2 ADLSITFCGIKSPNPFWLASAP---PT--NKYYNVARAF-EAGWGGVVWKTLGPPIVNVSSPRFGALVKEDRRFIGFNNI 75 (420)
T ss_pred CCceEEECCEecCCCcEeCCcC---CC--CCHHHHHHHH-HhCCCEEEEeecCCCCCCCCCCeEEEecCCCcccccccCc
Confidence 4789999999999999999721 11 1233444444 35766543 1110 00
Q ss_pred ------CHH----HH---hccCC-CceEEEeeecCCHHHHHHHHHHHHHcCCCEEEEecCCCCC-cchhHHHhhhcCCCC
Q 017781 113 ------SVE----EV---ASTGP-GIRFFQLYVYKDRNVVAQLVRRAERAGFKAIALTVDTPRL-GRREADIKNRFTLPP 177 (366)
Q Consensus 113 ------~~e----~i---~~~~~-~~~~~Qly~~~d~~~~~~~l~ra~~~G~~ai~vtvd~p~~-g~r~~d~~~~~~~p~ 177 (366)
.++ .+ .+..+ .+.++|+....+.+...+.++.++++|+++|.+|+.||.. ..| ++
T Consensus 76 ~~~s~~~~~~~~~~~~~~~~~~~~~p~i~si~g~~~~~~~~~~a~~~~~~g~d~ielN~scP~~~~~~------~~---- 145 (420)
T PRK08318 76 ELITDRPLEVNLREIRRVKRDYPDRALIASIMVECNEEEWKEIAPLVEETGADGIELNFGCPHGMSER------GM---- 145 (420)
T ss_pred ccccccCHHHHHHHHHHHHhhCCCceEEEEeccCCCHHHHHHHHHHHHhcCCCEEEEeCCCCCCcccc------CC----
Confidence 112 11 11222 4567898744377888889999999999999999999962 111 00
Q ss_pred ccccccccccccCCCccccchhhHHHhhhccCCCCCHHHHHHHHHhcCCCEEEEeccCHHH--------HHcCCcEEEEc
Q 017781 178 FLTLKNFQGLDLGKMDEANDSGLAAYVAGQIDRSLSWKDVKWLQTITKLPILVKGVLTAED--------VQAGAAGIIVS 249 (366)
Q Consensus 178 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~i~~lr~~~~~pv~vK~v~~~~d--------~~aGad~I~vs 249 (366)
+..+. .++....+.++++++.+++||+||...+..+ .++|+|+|++.
T Consensus 146 -----------------------g~~~~--~~~~~~~~i~~~v~~~~~~Pv~vKl~p~~~~~~~~a~~~~~~Gadgi~~~ 200 (420)
T PRK08318 146 -----------------------GSAVG--QVPELVEMYTRWVKRGSRLPVIVKLTPNITDIREPARAAKRGGADAVSLI 200 (420)
T ss_pred -----------------------ccccc--CCHHHHHHHHHHHHhccCCcEEEEcCCCcccHHHHHHHHHHCCCCEEEEe
Confidence 00111 2455566789999999999999998864432 78999999976
Q ss_pred CCC-c-----------------c---CCCCCcc----hHHHHHHHHHHcC-CCceEEEecCCCCHHHHHHHHHhCcCEEE
Q 017781 250 NHG-A-----------------R---QLDYVPA----TIMALEEVVKATQ-GRIPVFLDGGVRRGTDVFKALALGASGIF 303 (366)
Q Consensus 250 ~~g-g-----------------~---~~~~~~~----~~~~l~~i~~~~~-~~i~vi~~GGI~~~~dv~kalalGAd~V~ 303 (366)
|+- + + +..+|++ .++.+.++++.++ .++|||++|||.+++|++++|.+|||+||
T Consensus 201 Nt~~~~~~id~~~~~~~p~~~~~~~~gg~SG~a~~p~~l~~v~~~~~~~~~~~ipIig~GGI~s~~da~e~i~aGA~~Vq 280 (420)
T PRK08318 201 NTINSITGVDLDRMIPMPIVNGKSSHGGYCGPAVKPIALNMVAEIARDPETRGLPISGIGGIETWRDAAEFILLGAGTVQ 280 (420)
T ss_pred cccCccccccccccCCCceecCCCCcccccchhhhHHHHHHHHHHHhccccCCCCEEeecCcCCHHHHHHHHHhCCChhe
Confidence 642 1 1 1122444 4788888887764 37999999999999999999999999999
Q ss_pred ecHHHHHHhhhcCHHHHHHHHHHHHHHHHHHHHHcCCCChhhhcccce
Q 017781 304 IGRPVVYSLAAEGEKGVRRVLEMLREEFELAMALSGCRSLKEITRDHI 351 (366)
Q Consensus 304 igr~~l~~l~~~G~~gv~~~~~~l~~el~~~m~~~G~~~l~el~~~~l 351 (366)
|||.+++. |+. ++..|.+||+.+|...|+.++.++.+..+
T Consensus 281 i~ta~~~~----gp~----ii~~I~~~L~~~l~~~g~~si~e~iG~~~ 320 (420)
T PRK08318 281 VCTAAMQY----GFR----IVEDMISGLSHYMDEKGFASLEDMVGLAV 320 (420)
T ss_pred eeeeeccC----Cch----hHHHHHHHHHHHHHHcCcchHHHHhcccc
Confidence 99998863 553 67789999999999999999999987543
|
|
| >PLN02274 inosine-5'-monophosphate dehydrogenase | Back alignment and domain information |
|---|
Probab=99.84 E-value=3.2e-19 Score=182.09 Aligned_cols=136 Identities=21% Similarity=0.338 Sum_probs=109.9
Q ss_pred CCHHHHHHHHHhc-CCCEEEEeccCHHH----HHcCCcEEEEcCCCcc----CCCC--Cc---chHHHHHHHHHHcCCCc
Q 017781 212 LSWKDVKWLQTIT-KLPILVKGVLTAED----VQAGAAGIIVSNHGAR----QLDY--VP---ATIMALEEVVKATQGRI 277 (366)
Q Consensus 212 ~~~~~i~~lr~~~-~~pv~vK~v~~~~d----~~aGad~I~vs~~gg~----~~~~--~~---~~~~~l~~i~~~~~~~i 277 (366)
..|+.|+|+|+.+ +.+|+.+++.+.++ .++|||+|.|++|.|. +... +. +++..++++++.. ++
T Consensus 275 ~~~~~i~~ik~~~p~~~vi~g~v~t~e~a~~a~~aGaD~i~vg~g~G~~~~t~~~~~~g~~~~~~i~~~~~~~~~~--~v 352 (505)
T PLN02274 275 YQLEMIKYIKKTYPELDVIGGNVVTMYQAQNLIQAGVDGLRVGMGSGSICTTQEVCAVGRGQATAVYKVASIAAQH--GV 352 (505)
T ss_pred HHHHHHHHHHHhCCCCcEEEecCCCHHHHHHHHHcCcCEEEECCCCCccccCccccccCCCcccHHHHHHHHHHhc--CC
Confidence 3678999999999 58888999999998 9999999999988763 2222 22 2555677776655 79
Q ss_pred eEEEecCCCCHHHHHHHHHhCcCEEEecHHHHH--------------------Hhhh-----cC--------------HH
Q 017781 278 PVFLDGGVRRGTDVFKALALGASGIFIGRPVVY--------------------SLAA-----EG--------------EK 318 (366)
Q Consensus 278 ~vi~~GGI~~~~dv~kalalGAd~V~igr~~l~--------------------~l~~-----~G--------------~~ 318 (366)
|||++|||+++.|++|||++||++||+|+.|.- +++. .| ++
T Consensus 353 pVIadGGI~~~~di~kAla~GA~~V~vGs~~~~t~Esp~~~~~~~g~~~k~yrgmgs~~a~~~~~~~ry~~~~~~~~v~e 432 (505)
T PLN02274 353 PVIADGGISNSGHIVKALTLGASTVMMGSFLAGTTEAPGEYFYQDGVRVKKYRGMGSLEAMTKGSDQRYLGDTAKLKIAQ 432 (505)
T ss_pred eEEEeCCCCCHHHHHHHHHcCCCEEEEchhhcccccCCcceeeeCCeEEEEEeccchHHHHhccccccccccCcccccCC
Confidence 999999999999999999999999999998842 1110 00 12
Q ss_pred ----------HHHHHHHHHHHHHHHHHHHcCCCChhhhccc
Q 017781 319 ----------GVRRVLEMLREEFELAMALSGCRSLKEITRD 349 (366)
Q Consensus 319 ----------gv~~~~~~l~~el~~~m~~~G~~~l~el~~~ 349 (366)
.|.+++..|...|+..|.++|+.++.||+..
T Consensus 433 gv~~~v~~~g~~~~~~~~~~~g~~~~~~y~g~~~~~~~~~~ 473 (505)
T PLN02274 433 GVSGAVADKGSVLKFVPYTMQAVKQGFQDLGASSLQSAHEL 473 (505)
T ss_pred ceEEecccCCCHHHHHHHHHHHHHHhhhhcCcchHHHHHhh
Confidence 2789999999999999999999999999865
|
|
| >TIGR00742 yjbN tRNA dihydrouridine synthase A | Back alignment and domain information |
|---|
Probab=99.83 E-value=3.1e-19 Score=172.66 Aligned_cols=233 Identities=19% Similarity=0.221 Sum_probs=162.2
Q ss_pred ceEecccccccccCChhhHHHHHHHHHcCC-ceecCCCCCC------CHHHHhccCC--CceEEEeeecCCHHHHHHHHH
Q 017781 73 PIMIAPTAMQKMAHPEGEYATARAASAAGT-IMTLSSWSTS------SVEEVASTGP--GIRFFQLYVYKDRNVVAQLVR 143 (366)
Q Consensus 73 Pi~iApm~~~~l~~~~~e~~la~aa~~~G~-~~~vs~~~~~------~~e~i~~~~~--~~~~~Qly~~~d~~~~~~~l~ 143 (366)
|+++|||.+.+ +.++++.++++|. .++.++|.+. ...+.....+ .|..+||+ ..|++.+.+..+
T Consensus 2 ~~~lAPM~g~T------d~~fR~l~~~~g~~~~~~TEMv~a~~l~~~~~~~~l~~~~~e~p~~vQl~-g~~p~~~~~aA~ 74 (318)
T TIGR00742 2 RFSVAPMLDWT------DRHFRYFLRLLSKHTLLYTEMITAKAIIHGDKKDILKFSPEESPVALQLG-GSDPNDLAKCAK 74 (318)
T ss_pred CEEEECCCCCc------CHHHHHHHHHhCCCCEEEeCCEEEhhhhccCHHHHcccCCCCCcEEEEEc-cCCHHHHHHHHH
Confidence 79999998876 8899999999998 6888887432 1122222222 68999998 689999999999
Q ss_pred HHHHcCCCEEEEecCCCCCcchhHHHhhhcCCCCccccccccccccCCCccccchhhHHHhhhccCCCCCHHHHHHHHHh
Q 017781 144 RAERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLTLKNFQGLDLGKMDEANDSGLAAYVAGQIDRSLSWKDVKWLQTI 223 (366)
Q Consensus 144 ra~~~G~~ai~vtvd~p~~g~r~~d~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~i~~lr~~ 223 (366)
.+++.|++.|.||++||..- . . + .+.+..++ .++++..+.++.+++.
T Consensus 75 ~~~~~g~d~IDlN~GCP~~~-----v----------~-~---------------~g~Gs~Ll--~~p~~~~~iv~av~~~ 121 (318)
T TIGR00742 75 IAEKRGYDEINLNVGCPSDR-----V----------Q-N---------------GNFGACLM--GNADLVADCVKAMQEA 121 (318)
T ss_pred HHHhCCCCEEEEECCCCHHH-----h----------C-C---------------CCeehHhh--cCHHHHHHHHHHHHHH
Confidence 99999999999999999530 0 0 0 01122233 2566677889999999
Q ss_pred cCCCEEEEeccCH------HH--------HHcCCcEEEEcCCCc-cCCC-------CCcchHHHHHHHHHHcCCCceEEE
Q 017781 224 TKLPILVKGVLTA------ED--------VQAGAAGIIVSNHGA-RQLD-------YVPATIMALEEVVKATQGRIPVFL 281 (366)
Q Consensus 224 ~~~pv~vK~v~~~------~d--------~~aGad~I~vs~~gg-~~~~-------~~~~~~~~l~~i~~~~~~~i~vi~ 281 (366)
+++||.||..... ++ .++|+|.|+|+++.. .+.. ..+..|+.+.++++.+. ++|||+
T Consensus 122 ~~~PVsvKiR~g~~~~~~~~~~~~~~~~l~~~G~~~itvHgRt~~~qg~sg~~~~~~~~~~~~~i~~vk~~~~-~ipVi~ 200 (318)
T TIGR00742 122 VNIPVTVKHRIGIDPLDSYEFLCDFVEIVSGKGCQNFIVHARKAWLSGLSPKENREIPPLRYERVYQLKKDFP-HLTIEI 200 (318)
T ss_pred hCCCeEEEEecCCCCcchHHHHHHHHHHHHHcCCCEEEEeCCchhhcCCCccccccCCchhHHHHHHHHHhCC-CCcEEE
Confidence 9999999987522 22 789999999976532 1111 23346788888887663 699999
Q ss_pred ecCCCCHHHHHHHHHhCcCEEEecHHH-----HHHhh----hcC---HHHHHHHHHHHHHHHHHHHHHcCCCChhhhccc
Q 017781 282 DGGVRRGTDVFKALALGASGIFIGRPV-----VYSLA----AEG---EKGVRRVLEMLREEFELAMALSGCRSLKEITRD 349 (366)
Q Consensus 282 ~GGI~~~~dv~kalalGAd~V~igr~~-----l~~l~----~~G---~~gv~~~~~~l~~el~~~m~~~G~~~l~el~~~ 349 (366)
+|||++.+|+.+++. |||+|||||++ +|.-. .+| .....+.++.+.++++..... ...+.++++.
T Consensus 201 NGdI~s~~da~~~l~-g~dgVMigRgal~nP~if~~~~~~l~~~~~~~~~~~e~~~~~~~~~~~~~~~--~~~~~~~rk~ 277 (318)
T TIGR00742 201 NGGIKNSEQIKQHLS-HVDGVMVGREAYENPYLLANVDREIFNETDEILTRKEIVEQMLPYIEEYLSQ--GLSLNHITRH 277 (318)
T ss_pred ECCcCCHHHHHHHHh-CCCEEEECHHHHhCCHHHHHHHHHhcCCCCCCCCHHHHHHHHHHHHHHHHHc--cchHHHHHHH
Confidence 999999999999996 99999999965 44311 112 112344555666666554332 2345555554
|
Members of this family show a distant relationship to alpha/beta (TIM) barrel enzymes such as dihydroorotate dehydrogenase and glycolate oxidase. |
| >PRK05567 inosine 5'-monophosphate dehydrogenase; Reviewed | Back alignment and domain information |
|---|
Probab=99.83 E-value=3.2e-19 Score=182.22 Aligned_cols=137 Identities=26% Similarity=0.407 Sum_probs=113.1
Q ss_pred CHHHHHHHHHhc-CCCEEEEeccCHHH----HHcCCcEEEEcC-----CCccCC-CCCcchHHHHHHHHHHcC-CCceEE
Q 017781 213 SWKDVKWLQTIT-KLPILVKGVLTAED----VQAGAAGIIVSN-----HGARQL-DYVPATIMALEEVVKATQ-GRIPVF 280 (366)
Q Consensus 213 ~~~~i~~lr~~~-~~pv~vK~v~~~~d----~~aGad~I~vs~-----~gg~~~-~~~~~~~~~l~~i~~~~~-~~i~vi 280 (366)
.++.++++|+.+ ++||+++.+.+.++ .++|+|+|.++. ++++.. .++.|+++++.+++++.. ..+|||
T Consensus 256 vl~~i~~i~~~~p~~~vi~g~v~t~e~a~~l~~aGad~i~vg~g~gs~~~~r~~~~~g~p~~~~~~~~~~~~~~~~~~vi 335 (486)
T PRK05567 256 VLDRVREIKAKYPDVQIIAGNVATAEAARALIEAGADAVKVGIGPGSICTTRIVAGVGVPQITAIADAAEAAKKYGIPVI 335 (486)
T ss_pred HHHHHHHHHhhCCCCCEEEeccCCHHHHHHHHHcCCCEEEECCCCCccccceeecCCCcCHHHHHHHHHHHhccCCCeEE
Confidence 346799999998 89999999999987 999999999843 333443 568899999999988763 369999
Q ss_pred EecCCCCHHHHHHHHHhCcCEEEecHHHHH--------------------Hhhh------------------------cC
Q 017781 281 LDGGVRRGTDVFKALALGASGIFIGRPVVY--------------------SLAA------------------------EG 316 (366)
Q Consensus 281 ~~GGI~~~~dv~kalalGAd~V~igr~~l~--------------------~l~~------------------------~G 316 (366)
+||||+++.|++|||++|||+||+|++|.- +++. .|
T Consensus 336 adGGi~~~~di~kAla~GA~~v~~G~~~a~~~e~pg~~~~~~g~~~k~y~gm~s~~a~~~~~~~r~~~~~~~~~~~~~~g 415 (486)
T PRK05567 336 ADGGIRYSGDIAKALAAGASAVMLGSMLAGTEEAPGEVELYQGRSYKSYRGMGSLGAMSKGSSDRYFQSVNAADKLVPEG 415 (486)
T ss_pred EcCCCCCHHHHHHHHHhCCCEEEECccccccccCCCceEEECCEEEEEEeccchHHHHhcccccccccccccccccCCCc
Confidence 999999999999999999999999998721 1111 01
Q ss_pred H-------HHHHHHHHHHHHHHHHHHHHcCCCChhhhccc
Q 017781 317 E-------KGVRRVLEMLREEFELAMALSGCRSLKEITRD 349 (366)
Q Consensus 317 ~-------~gv~~~~~~l~~el~~~m~~~G~~~l~el~~~ 349 (366)
- ..+.+++..+...|+..|.++|..++.||+..
T Consensus 416 ~~~~~~~~g~~~~~~~~~~~g~~~~~~~~g~~~~~~~~~~ 455 (486)
T PRK05567 416 IEGRVPYKGPLSEIIHQLMGGLRSGMGYTGAATIEELREK 455 (486)
T ss_pred eEEeCCCCCCHHHHHHHHHHHHHHHHHhcCcCcHHHHHhc
Confidence 0 12889999999999999999999999999844
|
|
| >PRK05286 dihydroorotate dehydrogenase 2; Reviewed | Back alignment and domain information |
|---|
Probab=99.83 E-value=7.1e-19 Score=172.33 Aligned_cols=228 Identities=15% Similarity=0.177 Sum_probs=152.8
Q ss_pred CCCCccceeEcCcccCCceEecccccccccCChhhHHHHHHHHHcCCceec-CCCCCC----------------------
Q 017781 56 VSKIDMNTTVLGFKISMPIMIAPTAMQKMAHPEGEYATARAASAAGTIMTL-SSWSTS---------------------- 112 (366)
Q Consensus 56 ~~~vd~st~l~g~~l~~Pi~iApm~~~~l~~~~~e~~la~aa~~~G~~~~v-s~~~~~---------------------- 112 (366)
..+++++|+++|.++.+||++|. |. +++....+.+.+.|.++++ .|....
T Consensus 44 ~~~~~L~~~~~Gl~l~nPi~~As-G~------~~~~~~~~~~~~~G~Gavv~ktvt~~p~~gn~~pr~~~~~~~~~~~N~ 116 (344)
T PRK05286 44 YTDPRLPVTVMGLTFPNPVGLAA-GF------DKNGEAIDALGALGFGFVEVGTVTPRPQPGNPKPRLFRLPEDEALINR 116 (344)
T ss_pred CCCCCCceEECCEECCCCCEECC-CC------CCChHHHHHHHHcCCCEEEeCCcCCCCCCCCCCCCEEecccccccccC
Confidence 45788999999999999999876 32 2355667778899988875 332211
Q ss_pred ------CHH----HHhcc-CCCceEEEeeecC------CHHHHHHHHHHHHHcCCCEEEEecCCCCCc-chhHHHhhhcC
Q 017781 113 ------SVE----EVAST-GPGIRFFQLYVYK------DRNVVAQLVRRAERAGFKAIALTVDTPRLG-RREADIKNRFT 174 (366)
Q Consensus 113 ------~~e----~i~~~-~~~~~~~Qly~~~------d~~~~~~~l~ra~~~G~~ai~vtvd~p~~g-~r~~d~~~~~~ 174 (366)
.++ ++.+. ...|.+.++.... ..+...++++++.+ +++++.+++.||... .|.
T Consensus 117 ~gl~n~g~~~~~~~l~~~~~~~pvivsI~~~~~~~~~~~~~d~~~~~~~~~~-~ad~lelN~scP~~~g~~~-------- 187 (344)
T PRK05286 117 MGFNNDGADALAERLKKAYRGIPLGINIGKNKDTPLEDAVDDYLICLEKLYP-YADYFTVNISSPNTPGLRD-------- 187 (344)
T ss_pred CCCCCHhHHHHHHHHHHhcCCCcEEEEEecCCCCCcccCHHHHHHHHHHHHh-hCCEEEEEccCCCCCCccc--------
Confidence 011 11111 1124555553211 23334444444433 467777777776431 000
Q ss_pred CCCccccccccccccCCCccccchhhHHHhhhccCCCCCHHHHHHHHHhcC-----CCEEEEeccCH--HH--------H
Q 017781 175 LPPFLTLKNFQGLDLGKMDEANDSGLAAYVAGQIDRSLSWKDVKWLQTITK-----LPILVKGVLTA--ED--------V 239 (366)
Q Consensus 175 ~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~i~~lr~~~~-----~pv~vK~v~~~--~d--------~ 239 (366)
..++....+.++++|+.++ +||++|...+. ++ .
T Consensus 188 --------------------------------~~~~~~~~eiv~aVr~~~~~~~~~~PV~vKlsp~~~~~~~~~ia~~l~ 235 (344)
T PRK05286 188 --------------------------------LQYGEALDELLAALKEAQAELHGYVPLLVKIAPDLSDEELDDIADLAL 235 (344)
T ss_pred --------------------------------ccCHHHHHHHHHHHHHHHhccccCCceEEEeCCCCCHHHHHHHHHHHH
Confidence 0123334467899999886 99999987532 22 7
Q ss_pred HcCCcEEEEcCCCc-------------cCCCCCcc----hHHHHHHHHHHcCCCceEEEecCCCCHHHHHHHHHhCcCEE
Q 017781 240 QAGAAGIIVSNHGA-------------RQLDYVPA----TIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGI 302 (366)
Q Consensus 240 ~aGad~I~vs~~gg-------------~~~~~~~~----~~~~l~~i~~~~~~~i~vi~~GGI~~~~dv~kalalGAd~V 302 (366)
++|+|+|+++|.-- ....+|++ .++.+.++++.+++++|||++|||++++|+.++|.+|||+|
T Consensus 236 ~~Gadgi~~~nt~~~~~~~~~~~~~~~~gg~SG~~~~~~~l~~v~~l~~~~~~~ipIig~GGI~s~eda~e~l~aGAd~V 315 (344)
T PRK05286 236 EHGIDGVIATNTTLSRDGLKGLPNADEAGGLSGRPLFERSTEVIRRLYKELGGRLPIIGVGGIDSAEDAYEKIRAGASLV 315 (344)
T ss_pred HhCCcEEEEeCCccccccccccccCCCCCCcccHHHHHHHHHHHHHHHHHhCCCCCEEEECCCCCHHHHHHHHHcCCCHH
Confidence 88999999998531 01112332 56678888888766799999999999999999999999999
Q ss_pred EecHHHHHHhhhcCHHHHHHHHHHHHHHHHHHHHHcC
Q 017781 303 FIGRPVVYSLAAEGEKGVRRVLEMLREEFELAMALSG 339 (366)
Q Consensus 303 ~igr~~l~~l~~~G~~gv~~~~~~l~~el~~~m~~~G 339 (366)
++||++++. |+. ++..+++||+.+|...|
T Consensus 316 ~v~~~~~~~----gP~----~~~~i~~~L~~~l~~~g 344 (344)
T PRK05286 316 QIYSGLIYE----GPG----LVKEIVRGLARLLRRDG 344 (344)
T ss_pred HHHHHHHHh----Cch----HHHHHHHHHHHHHHhcC
Confidence 999999873 553 66788999999998765
|
|
| >cd04741 DHOD_1A_like Dihydroorotate dehydrogenase (DHOD) class 1A FMN-binding domain | Back alignment and domain information |
|---|
Probab=99.79 E-value=7.7e-18 Score=161.68 Aligned_cols=219 Identities=17% Similarity=0.129 Sum_probs=150.6
Q ss_pred eeEcCcccCCceEecccccccccCChhhHHHHHHHHHcCCceec-CCCCC--------------------------CCH-
Q 017781 63 TTVLGFKISMPIMIAPTAMQKMAHPEGEYATARAASAAGTIMTL-SSWST--------------------------SSV- 114 (366)
Q Consensus 63 t~l~g~~l~~Pi~iApm~~~~l~~~~~e~~la~aa~~~G~~~~v-s~~~~--------------------------~~~- 114 (366)
++++|++|++||++|+=. .+.+.+..+.+.+.|+++++ .|... ..+
T Consensus 1 ~~~~Gl~l~nPi~~Asg~------~~~~~e~~~~~~~~G~Gavv~ktit~~~~~gn~~pr~~~~~~~~~N~~G~~n~g~~ 74 (294)
T cd04741 1 VTPPGLTISPPLMNAAGP------WCTTLEDLLELAASSTGAVTTRSSTLAGRPGNPEPRYYAFPLGSINSLGLPNLGLD 74 (294)
T ss_pred CccCCeeCCCCCEECCCC------CCCCHHHHHHHHHcCCcEEEeCcccCCCCCCCCCCcEEecCccccccccCCCcCHH
Confidence 478999999999999832 23466677777778988875 22211 011
Q ss_pred ---HHHhcc------CCCceEEEeeecCCHHHHHHHHHHHHHc---CCCEEEEecCCCCCcchhHHHhhhcCCCCccccc
Q 017781 115 ---EEVAST------GPGIRFFQLYVYKDRNVVAQLVRRAERA---GFKAIALTVDTPRLGRREADIKNRFTLPPFLTLK 182 (366)
Q Consensus 115 ---e~i~~~------~~~~~~~Qly~~~d~~~~~~~l~ra~~~---G~~ai~vtvd~p~~g~r~~d~~~~~~~p~~~~~~ 182 (366)
+++.+. ...|...|+... .+...+.++++++. |++++.+|+.||.....
T Consensus 75 ~~~~~i~~~~~~~~~~~~pvivsi~g~--~~~~~~~~~~~~~~~~~~ad~ielN~sCPn~~~~----------------- 135 (294)
T cd04741 75 YYLEYIRTISDGLPGSAKPFFISVTGS--AEDIAAMYKKIAAHQKQFPLAMELNLSCPNVPGK----------------- 135 (294)
T ss_pred HHHHHHHHHhhhccccCCeEEEECCCC--HHHHHHHHHHHHhhccccccEEEEECCCCCCCCc-----------------
Confidence 222221 125678888643 66667777777765 69999999999963100
Q ss_pred cccccccCCCccccchhhHHHhhhccCCCCCHHHHHHHHHhcCCCEEEEeccCHH--H--------HHc--CCcEEEEcC
Q 017781 183 NFQGLDLGKMDEANDSGLAAYVAGQIDRSLSWKDVKWLQTITKLPILVKGVLTAE--D--------VQA--GAAGIIVSN 250 (366)
Q Consensus 183 ~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~i~~lr~~~~~pv~vK~v~~~~--d--------~~a--Gad~I~vs~ 250 (366)
.. + ..+++...+.++++|+.+++||++|.....+ + .++ |+|+|++.|
T Consensus 136 ------------------~~-~--~~~~~~~~~i~~~v~~~~~iPv~vKl~p~~~~~~~~~~a~~l~~~~~G~~gi~~~N 194 (294)
T cd04741 136 ------------------PP-P--AYDFDATLEYLTAVKAAYSIPVGVKTPPYTDPAQFDTLAEALNAFACPISFITATN 194 (294)
T ss_pred ------------------cc-c--cCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCHHHHHHHHHHHhccccCCcEEEEEc
Confidence 00 0 0134455678999999999999999885332 2 456 999999876
Q ss_pred CCc---------cC-------CCCCcc-------hHHHHHHHHHHcCCCceEEEecCCCCHHHHHHHHHhCcCEEEecHH
Q 017781 251 HGA---------RQ-------LDYVPA-------TIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFIGRP 307 (366)
Q Consensus 251 ~gg---------~~-------~~~~~~-------~~~~l~~i~~~~~~~i~vi~~GGI~~~~dv~kalalGAd~V~igr~ 307 (366)
.-+ +. ..+|.+ .+..+.++++.+++++|||++|||.+++|++++|.+|||+||+||.
T Consensus 195 t~~~~~~id~~~~~~~~~~~~~~gG~SG~~i~~~al~~v~~~~~~~~~~ipIig~GGI~s~~da~e~l~aGA~~Vqv~ta 274 (294)
T cd04741 195 TLGNGLVLDPERETVVLKPKTGFGGLAGAYLHPLALGNVRTFRRLLPSEIQIIGVGGVLDGRGAFRMRLAGASAVQVGTA 274 (294)
T ss_pred cCCccccccCCCCCcccCCCCCCCCcCchhhHHHHHHHHHHHHHhcCCCCCEEEeCCCCCHHHHHHHHHcCCCceeEchh
Confidence 431 11 112222 3455677777775569999999999999999999999999999999
Q ss_pred HHHHhhhcCHHHHHHHHHHHHHHHHHHH
Q 017781 308 VVYSLAAEGEKGVRRVLEMLREEFELAM 335 (366)
Q Consensus 308 ~l~~l~~~G~~gv~~~~~~l~~el~~~m 335 (366)
+++. |+. +++.+.+||+.+|
T Consensus 275 ~~~~----gp~----~~~~i~~~L~~~~ 294 (294)
T cd04741 275 LGKE----GPK----VFARIEKELEDIW 294 (294)
T ss_pred hhhc----Cch----HHHHHHHHHHhhC
Confidence 9862 543 5667788888764
|
DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences and cellular location. Members of class 1 are cytosolic enzymes and multimers while class 2 enzymes are membrane associated and monomeric. The class 1 enzymes can be further divided into subtypes 1A and 1B which are homodimers and heterotetrameric proteins, respectively. |
| >PF01207 Dus: Dihydrouridine synthase (Dus); InterPro: IPR001269 Members of this family catalyse the reduction of the 5,6-double bond of a uridine residue on tRNA | Back alignment and domain information |
|---|
Probab=99.79 E-value=8.9e-19 Score=169.23 Aligned_cols=236 Identities=24% Similarity=0.328 Sum_probs=153.5
Q ss_pred EecccccccccCChhhHHHHHHHHHcCCc-eecCCCCCC-----CHH---HHhccCC--CceEEEeeecCCHHHHHHHHH
Q 017781 75 MIAPTAMQKMAHPEGEYATARAASAAGTI-MTLSSWSTS-----SVE---EVASTGP--GIRFFQLYVYKDRNVVAQLVR 143 (366)
Q Consensus 75 ~iApm~~~~l~~~~~e~~la~aa~~~G~~-~~vs~~~~~-----~~e---~i~~~~~--~~~~~Qly~~~d~~~~~~~l~ 143 (366)
++|||.+.+ +.+++..+.++|.. .+.+++.+. ..+ +.....+ .|..+||. .+|++.+.+.++
T Consensus 1 ~LAPM~g~t------d~~fR~l~~~~g~~~~~~temi~a~~~~~~~~~~~~~~~~~~~~~p~~~Ql~-g~~~~~~~~aa~ 73 (309)
T PF01207_consen 1 ILAPMAGVT------DLPFRRLCREFGADDLTYTEMISAKAILRSNKKTIRLLPFLPNERPLIVQLF-GNDPEDLAEAAE 73 (309)
T ss_dssp -E---TTTS------SHHHHHHHHCCTSSSBEE-S-EEHHHHHCT-HHHHHHS-GCC-T-TEEEEEE--S-HHHHHHHHH
T ss_pred CccCCCCCc------hHHHHHHHHHHCCCeEEEcCCEEECcccccccceeecccccccccceeEEEe-eccHHHHHHHHH
Confidence 589998765 88999999999999 888887431 111 1111222 58999998 689999999998
Q ss_pred HHHHcCCCEEEEecCCCCCcchhHHHhhhcCCCCccccccccccccCCCccccchhhHHHhhhccCCCCCHHHHHHHHHh
Q 017781 144 RAERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLTLKNFQGLDLGKMDEANDSGLAAYVAGQIDRSLSWKDVKWLQTI 223 (366)
Q Consensus 144 ra~~~G~~ai~vtvd~p~~g~r~~d~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~i~~lr~~ 223 (366)
.+.+.|++.|.||++||.. . ++ + .+.+..++ .+++...+.++.+++.
T Consensus 74 ~~~~~~~~~IDlN~GCP~~-----~----------v~-~---------------~g~Ga~Ll--~~p~~~~~iv~~~~~~ 120 (309)
T PF01207_consen 74 IVAELGFDGIDLNMGCPAP-----K----------VT-K---------------GGAGAALL--KDPDLLAEIVKAVRKA 120 (309)
T ss_dssp HHCCTT-SEEEEEE---SH-----H----------HH-H---------------CT-GGGGG--C-HHHHHHHHHHHHHH
T ss_pred hhhccCCcEEeccCCCCHH-----H----------Hh-c---------------CCcChhhh--cChHHhhHHHHhhhcc
Confidence 8888999999999999963 0 00 0 01222333 2566667789999999
Q ss_pred cCCCEEEEeccCHH----H--------HHcCCcEEEEcCCCccCCCCCcchHHHHHHHHHHcCCCceEEEecCCCCHHHH
Q 017781 224 TKLPILVKGVLTAE----D--------VQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDV 291 (366)
Q Consensus 224 ~~~pv~vK~v~~~~----d--------~~aGad~I~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~i~vi~~GGI~~~~dv 291 (366)
+++||.+|.....+ + .++|+++|+|+++...|...+++.|+.+.++++.+ ++|||++|||.+.+|+
T Consensus 121 ~~~pvsvKiR~g~~~~~~~~~~~~~~l~~~G~~~i~vH~Rt~~q~~~~~a~w~~i~~i~~~~--~ipvi~NGdI~s~~d~ 198 (309)
T PF01207_consen 121 VPIPVSVKIRLGWDDSPEETIEFARILEDAGVSAITVHGRTRKQRYKGPADWEAIAEIKEAL--PIPVIANGDIFSPEDA 198 (309)
T ss_dssp -SSEEEEEEESECT--CHHHHHHHHHHHHTT--EEEEECS-TTCCCTS---HHHHHHCHHC---TSEEEEESS--SHHHH
T ss_pred cccceEEecccccccchhHHHHHHHHhhhcccceEEEecCchhhcCCcccchHHHHHHhhcc--cceeEEcCccCCHHHH
Confidence 99999999875332 1 89999999999887777778899999999999988 6999999999999999
Q ss_pred HHHHHh-CcCEEEecHH-----HHHHh---hhcCH----HHHHHHHHHHHHHHHHHHHHcCC-CChhhhccccee
Q 017781 292 FKALAL-GASGIFIGRP-----VVYSL---AAEGE----KGVRRVLEMLREEFELAMALSGC-RSLKEITRDHIV 352 (366)
Q Consensus 292 ~kalal-GAd~V~igr~-----~l~~l---~~~G~----~gv~~~~~~l~~el~~~m~~~G~-~~l~el~~~~l~ 352 (366)
.+.+.. |+|+|||||. ++|.. ...|. .-+.+.++.+.++++......|. ..+..+++...+
T Consensus 199 ~~~~~~tg~dgvMigRgal~nP~lf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~ 273 (309)
T PF01207_consen 199 ERMLEQTGADGVMIGRGALGNPWLFREIDQIKEGEPEPFPPIAERLDIILRHYDYMEEFYGEEKALRQMRKHLKW 273 (309)
T ss_dssp HHHCCCH-SSEEEESHHHCC-CCHHCHHHCHHHHTT--S--HHHHHHHHHHHHHHHHHHHHCCHHHHHHHTTCCC
T ss_pred HHHHHhcCCcEEEEchhhhhcCHHhhhhhhhccCCCCCCCchhHHHHHHHHHHHHHHHHhccCchHHHHHHHHHH
Confidence 999984 9999999994 45541 11111 11456677788888877777763 356666665443
|
Dihydrouridine modification of tRNA is widely observed in prokaryotes and eukaryotes, and also in some archae. Most dihydrouridines are found in the D loop of t-RNAs. The role of dihydrouridine in tRNA is currently unknown, but may increase conformational flexibility of the tRNA. It is likely that different family members have different substrate specificities, which may overlap. Dus 1 (P53759 from SWISSPROT) from Saccharomyces cerevisiae (Baker's yeast) acts on pre-tRNA-Phe, while Dus 2 (P53720 from SWISSPROT) acts on pre-tRNA-Tyr and pre-tRNA-Leu. Dus 1 is active as a single subunit, requiring NADPH or NADH, and is stimulated by the presence of FAD []. Some family members may be targeted to the mitochondria and even have a role in mitochondria []. ; GO: 0017150 tRNA dihydrouridine synthase activity, 0050660 flavin adenine dinucleotide binding, 0008033 tRNA processing, 0055114 oxidation-reduction process; PDB: 1VHN_A 3B0P_A 3B0V_D 3B0U_Y. |
| >cd04738 DHOD_2_like Dihydroorotate dehydrogenase (DHOD) class 2 | Back alignment and domain information |
|---|
Probab=99.78 E-value=1.1e-17 Score=162.84 Aligned_cols=233 Identities=19% Similarity=0.196 Sum_probs=150.7
Q ss_pred chhhHHHhHhcccceeeecccc-CCCCCCccceeEcCcccCCceEecccccccccCChhhHHHHHHHHHcCCceec-CCC
Q 017781 32 DQWTLQENRNAFSRILFRPRIL-IDVSKIDMNTTVLGFKISMPIMIAPTAMQKMAHPEGEYATARAASAAGTIMTL-SSW 109 (366)
Q Consensus 32 ~~~t~~~N~~~f~~i~l~pr~l-~~~~~vd~st~l~g~~l~~Pi~iApm~~~~l~~~~~e~~la~aa~~~G~~~~v-s~~ 109 (366)
-|.+++-....++-+...|-.. +...+.|++|+++|.++.+||++|. |. +++....+.+.+.|+++++ .|.
T Consensus 9 ~~~~h~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~~Gl~l~nPi~~As-G~------~~~~~~~~~~~~~G~Gavv~kti 81 (327)
T cd04738 9 PETAHRLAIRALKLGLGPPLLLLLVYDDPRLEVEVFGLTFPNPVGLAA-GF------DKNAEAIDALLALGFGFVEVGTV 81 (327)
T ss_pred HHHHHHHHHHHHHhcCCCCCccccCCCCCCcceEECCEECCCCCEeCc-CC------CCCHHHHHHHHHCCCcEEEEecc
Confidence 3455555566666555555332 4567899999999999999998876 32 2344556666688888775 222
Q ss_pred CCC----------------------------C----HHHHhccC--CCceEEEeeecCC------HHHHHHHHHHHHHcC
Q 017781 110 STS----------------------------S----VEEVASTG--PGIRFFQLYVYKD------RNVVAQLVRRAERAG 149 (366)
Q Consensus 110 ~~~----------------------------~----~e~i~~~~--~~~~~~Qly~~~d------~~~~~~~l~ra~~~G 149 (366)
+.. . ++++.+.. ..|.++|+..... .+...++++++.. .
T Consensus 82 t~~~~~gn~~pr~~~~~~~~~~~n~~g~~n~g~~~~~~~l~~~~~~~~plivsi~g~~~~~~~~~~~d~~~~~~~~~~-~ 160 (327)
T cd04738 82 TPRPQPGNPKPRLFRLPEDEALINRMGFNNDGADAVAKRLKKRRPRGGPLGVNIGKNKDTPLEDAVEDYVIGVRKLGP-Y 160 (327)
T ss_pred CCCCCCCCCCCCEEEccCccceeecCCCCCccHHHHHHHHHHhccCCCeEEEEEeCCCCCcccccHHHHHHHHHHHHh-h
Confidence 110 0 12222211 2456777753221 2333334444433 3
Q ss_pred CCEEEEecCCCCCcchhHHHhhhcCCCCccccccccccccCCCccccchhhHHHhhhccCCCCCHHHHHHHHHhcC----
Q 017781 150 FKAIALTVDTPRLGRREADIKNRFTLPPFLTLKNFQGLDLGKMDEANDSGLAAYVAGQIDRSLSWKDVKWLQTITK---- 225 (366)
Q Consensus 150 ~~ai~vtvd~p~~g~r~~d~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~i~~lr~~~~---- 225 (366)
++++.+++.||..... + . ..++....+.++++|+.++
T Consensus 161 ad~ielN~scP~~~g~----------------~--------------------~---~~~~~~~~~iv~av~~~~~~~~~ 201 (327)
T cd04738 161 ADYLVVNVSSPNTPGL----------------R--------------------D---LQGKEALRELLTAVKEERNKLGK 201 (327)
T ss_pred CCEEEEECCCCCCCcc----------------c--------------------c---ccCHHHHHHHHHHHHHHHhhccc
Confidence 7888888888753100 0 0 0133334467899998875
Q ss_pred -CCEEEEeccCH--HH--------HHcCCcEEEEcCCCcc-------------CCCCCc----chHHHHHHHHHHcCCCc
Q 017781 226 -LPILVKGVLTA--ED--------VQAGAAGIIVSNHGAR-------------QLDYVP----ATIMALEEVVKATQGRI 277 (366)
Q Consensus 226 -~pv~vK~v~~~--~d--------~~aGad~I~vs~~gg~-------------~~~~~~----~~~~~l~~i~~~~~~~i 277 (366)
+||++|..... ++ .++|+|+|+++|.... +..+|+ .+++.+.++++.+++++
T Consensus 202 ~~Pv~vKl~~~~~~~~~~~ia~~l~~aGad~I~~~n~~~~~~~~~~~~~~~~~gG~sG~~~~~~~l~~v~~l~~~~~~~i 281 (327)
T cd04738 202 KVPLLVKIAPDLSDEELEDIADVALEHGVDGIIATNTTISRPGLLRSPLANETGGLSGAPLKERSTEVLRELYKLTGGKI 281 (327)
T ss_pred CCCeEEEeCCCCCHHHHHHHHHHHHHcCCcEEEEECCcccccccccccccCCCCccCChhhhHHHHHHHHHHHHHhCCCC
Confidence 99999987533 23 8899999999884210 001222 34678888888886679
Q ss_pred eEEEecCCCCHHHHHHHHHhCcCEEEecHHHHHH
Q 017781 278 PVFLDGGVRRGTDVFKALALGASGIFIGRPVVYS 311 (366)
Q Consensus 278 ~vi~~GGI~~~~dv~kalalGAd~V~igr~~l~~ 311 (366)
|||++|||++++|+.+++.+|||+||+||++++.
T Consensus 282 pIi~~GGI~t~~da~e~l~aGAd~V~vg~~~~~~ 315 (327)
T cd04738 282 PIIGVGGISSGEDAYEKIRAGASLVQLYTGLVYE 315 (327)
T ss_pred cEEEECCCCCHHHHHHHHHcCCCHHhccHHHHhh
Confidence 9999999999999999999999999999999873
|
DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences, their cellular location and their natural electron acceptor used to reoxidize the flavin group. Members of class 1 are cytosolic enzymes and multimers, while class 2 enzymes are membrane associated, monomeric and use respiratory quinones as their physiological electron acceptors. |
| >PRK11815 tRNA-dihydrouridine synthase A; Provisional | Back alignment and domain information |
|---|
Probab=99.78 E-value=6.5e-18 Score=164.78 Aligned_cols=238 Identities=21% Similarity=0.215 Sum_probs=164.3
Q ss_pred cccCCceEecccccccccCChhhHHHHHHHHHcCC-ceecCCCCCC------CHHHHhccCC--CceEEEeeecCCHHHH
Q 017781 68 FKISMPIMIAPTAMQKMAHPEGEYATARAASAAGT-IMTLSSWSTS------SVEEVASTGP--GIRFFQLYVYKDRNVV 138 (366)
Q Consensus 68 ~~l~~Pi~iApm~~~~l~~~~~e~~la~aa~~~G~-~~~vs~~~~~------~~e~i~~~~~--~~~~~Qly~~~d~~~~ 138 (366)
.....|+++|||.+.+ +.++++.|+++|. .++.++|.+. ...+.....+ .|..+||+ ..|++..
T Consensus 7 ~~~~~~~~lAPM~g~t------d~~fR~~~~~~g~~~~~~temv~~~~l~~~~~~~~l~~~~~e~p~~vQl~-g~~p~~~ 79 (333)
T PRK11815 7 KLPSRRFSVAPMMDWT------DRHCRYFHRLLSRHALLYTEMVTTGAIIHGDRERLLAFDPEEHPVALQLG-GSDPADL 79 (333)
T ss_pred cCCCCCEEEeCCCCCc------CHHHHHHHHHhCCCCEEEECCEEeccccccCHHHHhccCCCCCcEEEEEe-CCCHHHH
Confidence 3456799999998865 8899999999997 6777777431 1122222222 68999998 6889999
Q ss_pred HHHHHHHHHcCCCEEEEecCCCCCcchhHHHhhhcCCCCccccccccccccCCCccccchhhHHHhhhccCCCCCHHHHH
Q 017781 139 AQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLTLKNFQGLDLGKMDEANDSGLAAYVAGQIDRSLSWKDVK 218 (366)
Q Consensus 139 ~~~l~ra~~~G~~ai~vtvd~p~~g~r~~d~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~i~ 218 (366)
.+.+++++++|+++|.||++||..-.|. . +.+..+. .++.+..+.++
T Consensus 80 ~~aA~~~~~~g~d~IdlN~gCP~~~v~~-----------------------------~--~~Gs~L~--~~p~~~~eiv~ 126 (333)
T PRK11815 80 AEAAKLAEDWGYDEINLNVGCPSDRVQN-----------------------------G--RFGACLM--AEPELVADCVK 126 (333)
T ss_pred HHHHHHHHhcCCCEEEEcCCCCHHHccC-----------------------------C--CeeeHHh--cCHHHHHHHHH
Confidence 9999999999999999999998531110 0 0111122 25667778899
Q ss_pred HHHHhcCCCEEEEeccC------HHH--------HHcCCcEEEEcCCCc-cCC-------CCCcchHHHHHHHHHHcCCC
Q 017781 219 WLQTITKLPILVKGVLT------AED--------VQAGAAGIIVSNHGA-RQL-------DYVPATIMALEEVVKATQGR 276 (366)
Q Consensus 219 ~lr~~~~~pv~vK~v~~------~~d--------~~aGad~I~vs~~gg-~~~-------~~~~~~~~~l~~i~~~~~~~ 276 (366)
.+++.+++||.+|.... .++ .++|+|+|+|++..+ .+. ...+..++.+.++++.+. +
T Consensus 127 avr~~v~~pVsvKiR~g~~~~~t~~~~~~~~~~l~~aG~d~i~vh~Rt~~~~g~~~~~~~~~~~~~~~~i~~v~~~~~-~ 205 (333)
T PRK11815 127 AMKDAVSIPVTVKHRIGIDDQDSYEFLCDFVDTVAEAGCDTFIVHARKAWLKGLSPKENREIPPLDYDRVYRLKRDFP-H 205 (333)
T ss_pred HHHHHcCCceEEEEEeeeCCCcCHHHHHHHHHHHHHhCCCEEEEcCCchhhcCCCccccccCCCcCHHHHHHHHHhCC-C
Confidence 99999999999997432 122 789999999986432 111 113346788888887642 6
Q ss_pred ceEEEecCCCCHHHHHHHHHhCcCEEEecHHHHHH-----hh---hcCH----HHHHHHHHHHHHHHHHHHHHcCCCChh
Q 017781 277 IPVFLDGGVRRGTDVFKALALGASGIFIGRPVVYS-----LA---AEGE----KGVRRVLEMLREEFELAMALSGCRSLK 344 (366)
Q Consensus 277 i~vi~~GGI~~~~dv~kalalGAd~V~igr~~l~~-----l~---~~G~----~gv~~~~~~l~~el~~~m~~~G~~~l~ 344 (366)
+|||++|||++.+|+.++++ |||+|||||+++.. -. ..|. ....++++.+.++++..... |. .+.
T Consensus 206 iPVI~nGgI~s~eda~~~l~-~aDgVmIGRa~l~nP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~-~~~ 282 (333)
T PRK11815 206 LTIEINGGIKTLEEAKEHLQ-HVDGVMIGRAAYHNPYLLAEVDRELFGEPAPPLSRSEVLEAMLPYIERHLAQ-GG-RLN 282 (333)
T ss_pred CeEEEECCcCCHHHHHHHHh-cCCEEEEcHHHHhCCHHHHHHHHHhcCCCCCCCCHHHHHHHHHHHHHHHHHc-Cc-hHH
Confidence 99999999999999999997 89999999976532 11 1122 12345566666666665552 33 355
Q ss_pred hhccc
Q 017781 345 EITRD 349 (366)
Q Consensus 345 el~~~ 349 (366)
.+++.
T Consensus 283 ~~rk~ 287 (333)
T PRK11815 283 HITRH 287 (333)
T ss_pred HHHHH
Confidence 55544
|
|
| >PRK07807 inosine 5-monophosphate dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=99.76 E-value=5.1e-17 Score=164.89 Aligned_cols=137 Identities=28% Similarity=0.369 Sum_probs=110.9
Q ss_pred CHHHHHHHHHhc-CCCEEEEeccCHHH----HHcCCcEEEEcCCCcc----C--CCCCcchHHHHHHHHHHcCC-CceEE
Q 017781 213 SWKDVKWLQTIT-KLPILVKGVLTAED----VQAGAAGIIVSNHGAR----Q--LDYVPATIMALEEVVKATQG-RIPVF 280 (366)
Q Consensus 213 ~~~~i~~lr~~~-~~pv~vK~v~~~~d----~~aGad~I~vs~~gg~----~--~~~~~~~~~~l~~i~~~~~~-~i~vi 280 (366)
.++.|+++|+.+ +.+|+...+.|.+. .++|||+|.|.-..|. + ...+.|.++++.+++++... .+|||
T Consensus 255 ~~~~i~~ik~~~p~~~v~agnv~t~~~a~~l~~aGad~v~vgig~gsictt~~~~~~~~p~~~av~~~~~~~~~~~~~vi 334 (479)
T PRK07807 255 MLEALRAVRALDPGVPIVAGNVVTAEGTRDLVEAGADIVKVGVGPGAMCTTRMMTGVGRPQFSAVLECAAAARELGAHVW 334 (479)
T ss_pred HHHHHHHHHHHCCCCeEEeeccCCHHHHHHHHHcCCCEEEECccCCcccccccccCCchhHHHHHHHHHHHHHhcCCcEE
Confidence 456799999998 68888889999887 9999999998755442 1 23467899999999886533 79999
Q ss_pred EecCCCCHHHHHHHHHhCcCEEEecHHHHH---------------------------Hhh-----------------hcC
Q 017781 281 LDGGVRRGTDVFKALALGASGIFIGRPVVY---------------------------SLA-----------------AEG 316 (366)
Q Consensus 281 ~~GGI~~~~dv~kalalGAd~V~igr~~l~---------------------------~l~-----------------~~G 316 (366)
++|||+++.|++|||++||++||+|+.|.- ++. ..|
T Consensus 335 a~ggi~~~~~~~~al~~ga~~v~~g~~~ag~~Espg~~~~~~~g~~~k~yrgmgs~~a~~~~~~~~~~~~~~~~~~~~eG 414 (479)
T PRK07807 335 ADGGVRHPRDVALALAAGASNVMIGSWFAGTYESPGDLMRDRDGRPYKESFGMASARAVAARTAGDSAFDRARKALFEEG 414 (479)
T ss_pred ecCCCCCHHHHHHHHHcCCCeeeccHhhccCccCCCceEeccCCeEEEEeeccccHHHHhcccCccchhhhcccCCCCCC
Confidence 999999999999999999999999998831 111 011
Q ss_pred HHH-----------HHHHHHHHHHHHHHHHHHcCCCChhhhccc
Q 017781 317 EKG-----------VRRVLEMLREEFELAMALSGCRSLKEITRD 349 (366)
Q Consensus 317 ~~g-----------v~~~~~~l~~el~~~m~~~G~~~l~el~~~ 349 (366)
-++ +..+++.|...|+..|.++|..++.||+..
T Consensus 415 v~~~~~~~~~~~g~~~~~~~~l~~glr~~~~y~g~~~i~~~~~~ 458 (479)
T PRK07807 415 ISTSRMYLDPGRPGVEDLLDHITSGVRSSCTYAGARTLAEFHER 458 (479)
T ss_pred ccceeeeccCCCCCHHHHHHHHHHHHHHHHhhcCcCcHHHHHhC
Confidence 111 677899999999999999999999999866
|
|
| >COG0069 GltB Glutamate synthase domain 2 [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.75 E-value=5.7e-17 Score=161.62 Aligned_cols=254 Identities=22% Similarity=0.228 Sum_probs=171.8
Q ss_pred cccCCceEecccccccccCChhhHHHHHHHHHcCCceecCCCCCCCHHHHhccCCCceEEEeeecCCHHHHHHHHHHHHH
Q 017781 68 FKISMPIMIAPTAMQKMAHPEGEYATARAASAAGTIMTLSSWSTSSVEEVASTGPGIRFFQLYVYKDRNVVAQLVRRAER 147 (366)
Q Consensus 68 ~~l~~Pi~iApm~~~~l~~~~~e~~la~aa~~~G~~~~vs~~~~~~~e~i~~~~~~~~~~Qly~~~d~~~~~~~l~ra~~ 147 (366)
..+..||.++.|++++++ ++...++|+++.+.|..+-.++..- ..+.. +. ....+.|+-. .-..++.+.+.
T Consensus 163 ~~i~~~~~~~aMS~GAlS-~eA~~alA~a~~~~G~~sntGEGGe-~~~~~-~~-~~s~I~QvaS-GRFGV~~~yL~---- 233 (485)
T COG0069 163 LELKKRFVTGAMSFGALS-KEAHEALARAMNRIGTKSNTGEGGE-DPERY-ED-GRSAIKQVAS-GRFGVTPEYLA---- 233 (485)
T ss_pred ceeeecccccccCCcccc-HHHHHHHHHHHHHhcCcccCCCCCC-CHHHh-cc-ccceEEEecc-ccCccCHHHhC----
Confidence 567789999999998876 5678899999999998888877653 33433 21 2346778642 22333333332
Q ss_pred cCCCEEEEecCC---CCCcchhHHHhhhcCCCC-ccccccccccccCCCccccch-hhHHHhhhccCCC-CCHH----HH
Q 017781 148 AGFKAIALTVDT---PRLGRREADIKNRFTLPP-FLTLKNFQGLDLGKMDEANDS-GLAAYVAGQIDRS-LSWK----DV 217 (366)
Q Consensus 148 ~G~~ai~vtvd~---p~~g~r~~d~~~~~~~p~-~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~d~~-~~~~----~i 217 (366)
.++++.|-+.. |..|.+ +|. +++. .+++.+.. .....+++..+.+ .+.+ .|
T Consensus 234 -~a~~ieIKiaQGAKPGeGG~---------Lpg~KV~~---------~IA~~R~~~pG~~~ISP~pHHDiysieDLaqlI 294 (485)
T COG0069 234 -NADAIEIKIAQGAKPGEGGQ---------LPGEKVTP---------EIAKTRGSPPGVGLISPPPHHDIYSIEDLAQLI 294 (485)
T ss_pred -ccceEEEEeccCCCCCCCCC---------CCCccCCH---------HHHHhcCCCCCCCCcCCCCcccccCHHHHHHHH
Confidence 34555555542 221111 121 1110 00000000 0011222222222 2343 36
Q ss_pred HHHHHhc-CCCEEEEecc--CHHH-----HHcCCcEEEEcCCC-ccC-------CCCCcchHHHHHHHHHHc-----CCC
Q 017781 218 KWLQTIT-KLPILVKGVL--TAED-----VQAGAAGIIVSNHG-ARQ-------LDYVPATIMALEEVVKAT-----QGR 276 (366)
Q Consensus 218 ~~lr~~~-~~pv~vK~v~--~~~d-----~~aGad~I~vs~~g-g~~-------~~~~~~~~~~l~~i~~~~-----~~~ 276 (366)
..||+.. ..+|.||.+. .+++ .+++||.|+|+++. |+. .+.|.|....|+++.+.+ +++
T Consensus 295 ~dLk~~~~~~~I~VKlva~~~v~~iaagvakA~AD~I~IdG~~GGTGAsP~~~~~~~GiP~e~glae~~q~L~~~glRd~ 374 (485)
T COG0069 295 KDLKEANPWAKISVKLVAEHGVGTIAAGVAKAGADVITIDGADGGTGASPLTSIDHAGIPWELGLAETHQTLVLNGLRDK 374 (485)
T ss_pred HHHHhcCCCCeEEEEEecccchHHHHhhhhhccCCEEEEcCCCCcCCCCcHhHhhcCCchHHHHHHHHHHHHHHcCCcce
Confidence 6777765 3679999884 3333 89999999999984 442 246777777788887764 568
Q ss_pred ceEEEecCCCCHHHHHHHHHhCcCEEEecHHHHHHhhhc-----------------------------CHHHHHHHHHHH
Q 017781 277 IPVFLDGGVRRGTDVFKALALGASGIFIGRPVVYSLAAE-----------------------------GEKGVRRVLEML 327 (366)
Q Consensus 277 i~vi~~GGI~~~~dv~kalalGAd~V~igr~~l~~l~~~-----------------------------G~~gv~~~~~~l 327 (366)
+.|+++||++|+.||+||++||||.|.+||+.|.++.|. .++.|.+++..+
T Consensus 375 v~l~~~Ggl~Tg~DVaka~aLGAd~v~~gTa~lia~GCim~r~CH~~tCp~GIaTqdp~Lrkrl~~~~~~~~v~N~~~~~ 454 (485)
T COG0069 375 VKLIADGGLRTGADVAKAAALGADAVGFGTAALVALGCIMCRVCHTGTCPVGIATQDPELRKRLDVEGKPERVINYFTFV 454 (485)
T ss_pred eEEEecCCccCHHHHHHHHHhCcchhhhchHHHHHhhhHhhhhccCCCCCceeeecCHHHHhhcCccccHHHHHHHHHHH
Confidence 999999999999999999999999999999999988652 367899999999
Q ss_pred HHHHHHHHHHcCCCChhhhccc
Q 017781 328 REEFELAMALSGCRSLKEITRD 349 (366)
Q Consensus 328 ~~el~~~m~~~G~~~l~el~~~ 349 (366)
.+|++++|+.+|.+++++|.++
T Consensus 455 a~e~rella~lG~~~l~el~g~ 476 (485)
T COG0069 455 AEELRELLAALGKRSLSELIGR 476 (485)
T ss_pred HHHHHHHHHHhCCCCHHHHhcc
Confidence 9999999999999999999966
|
|
| >cd02810 DHOD_DHPD_FMN Dihydroorotate dehydrogenase (DHOD) and Dihydropyrimidine dehydrogenase (DHPD) FMN-binding domain | Back alignment and domain information |
|---|
Probab=99.75 E-value=1e-16 Score=153.44 Aligned_cols=203 Identities=23% Similarity=0.300 Sum_probs=145.1
Q ss_pred eeEcCcccCCceEecccccccccCChhhHHHHHHHHHcCCceec-CCCCCC-----------------------------
Q 017781 63 TTVLGFKISMPIMIAPTAMQKMAHPEGEYATARAASAAGTIMTL-SSWSTS----------------------------- 112 (366)
Q Consensus 63 t~l~g~~l~~Pi~iApm~~~~l~~~~~e~~la~aa~~~G~~~~v-s~~~~~----------------------------- 112 (366)
|+++|+++.+||++|+-... .+....+.+.+.|+++++ .|....
T Consensus 1 ~~~~G~~~~nPv~~aag~~~------~~~~~~~~~~~~g~g~vv~kti~~~~~~~n~~pr~~~~~~~~~~~~~~~~~~n~ 74 (289)
T cd02810 1 VNFLGLKLKNPFGVAAGPLL------KTGELIARAAAAGFGAVVYKTVTLHPRPGNPLPRVARLPPEGESYPEQLGILNS 74 (289)
T ss_pred CeECCEECCCCCEeCCCCCC------CCHHHHHHHHHcCCCeEEeCcccCCCCCCCCCCCEEEeccccccCcccceEeec
Confidence 57899999999999984321 366788888888888775 222110
Q ss_pred ------CHH----HHhc---c-CCCceEEEeeecCCHHHHHHHHHHHHHcCCCEEEEecCCCCCcchhHHHhhhcCCCCc
Q 017781 113 ------SVE----EVAS---T-GPGIRFFQLYVYKDRNVVAQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFTLPPF 178 (366)
Q Consensus 113 ------~~e----~i~~---~-~~~~~~~Qly~~~d~~~~~~~l~ra~~~G~~ai~vtvd~p~~g~r~~d~~~~~~~p~~ 178 (366)
..+ ++.+ . ...+...|+. ..+.+.+.+.+++++++|++++.+|+.||.....
T Consensus 75 ~g~~~~g~~~~~~~i~~~~~~~~~~pvi~si~-g~~~~~~~~~a~~~~~~G~d~ielN~~cP~~~~~------------- 140 (289)
T cd02810 75 FGLPNLGLDVWLQDIAKAKKEFPGQPLIASVG-GSSKEDYVELARKIERAGAKALELNLSCPNVGGG------------- 140 (289)
T ss_pred CCCCCcCHHHHHHHHHHHHhccCCCeEEEEec-cCCHHHHHHHHHHHHHhCCCEEEEEcCCCCCCCC-------------
Confidence 111 2221 1 1256778886 4577788888999999999999999999963110
Q ss_pred cccccccccccCCCccccchhhHHHhhhccCCCCCHHHHHHHHHhcCCCEEEEecc--CHHH--------HHcCCcEEEE
Q 017781 179 LTLKNFQGLDLGKMDEANDSGLAAYVAGQIDRSLSWKDVKWLQTITKLPILVKGVL--TAED--------VQAGAAGIIV 248 (366)
Q Consensus 179 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~i~~lr~~~~~pv~vK~v~--~~~d--------~~aGad~I~v 248 (366)
+. + ..++....+.++++|+.+++||++|... +.++ .++|+|+|++
T Consensus 141 ---~~--------------------~--~~~~~~~~eiv~~vr~~~~~pv~vKl~~~~~~~~~~~~a~~l~~~Gad~i~~ 195 (289)
T cd02810 141 ---RQ--------------------L--GQDPEAVANLLKAVKAAVDIPLLVKLSPYFDLEDIVELAKAAERAGADGLTA 195 (289)
T ss_pred ---cc--------------------c--ccCHHHHHHHHHHHHHccCCCEEEEeCCCCCHHHHHHHHHHHHHcCCCEEEE
Confidence 00 0 0133445677999999889999999764 3323 8899999999
Q ss_pred cCCC-ccC------------CC---CCc----chHHHHHHHHHHcCCCceEEEecCCCCHHHHHHHHHhCcCEEEecHHH
Q 017781 249 SNHG-ARQ------------LD---YVP----ATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFIGRPV 308 (366)
Q Consensus 249 s~~g-g~~------------~~---~~~----~~~~~l~~i~~~~~~~i~vi~~GGI~~~~dv~kalalGAd~V~igr~~ 308 (366)
+|+. +.. .. .++ ..++.+.++++.++.++|||++|||++++|+.+++++|||+|++||++
T Consensus 196 ~~~~~~~~~~~~~~~~~~~~~~~g~sg~~~~~~~~~~v~~i~~~~~~~ipiia~GGI~~~~da~~~l~~GAd~V~vg~a~ 275 (289)
T cd02810 196 INTISGRVVDLKTVGPGPKRGTGGLSGAPIRPLALRWVARLAARLQLDIPIIGVGGIDSGEDVLEMLMAGASAVQVATAL 275 (289)
T ss_pred EcccCccceecccCccccCCCCCccCcHHHHHHHHHHHHHHHHhcCCCCCEEEECCCCCHHHHHHHHHcCccHheEcHHH
Confidence 8752 211 01 111 246678888887755799999999999999999999999999999999
Q ss_pred HH
Q 017781 309 VY 310 (366)
Q Consensus 309 l~ 310 (366)
+.
T Consensus 276 ~~ 277 (289)
T cd02810 276 MW 277 (289)
T ss_pred Hh
Confidence 86
|
DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences and cellular location. Members of class 1 are cytosolic enzymes and multimers while class 2 enzymes are membrane associated and monomeric. The class 1 enzymes can be further divided into subtypes 1A and 1B which are homodimers and heterotetrameric proteins, respectively. DHPD catalyzes the first step in pyrimidine degradation: the NADPH-dependent reduction of uracil and thymine to the corresponding 5,6-dihydropyrimidines. DHPD contains two FAD, two FMN and eight [4Fe-4S] clusters, arranged in two electron transfer chains that pass its homodimeric interface twice. Two of |
| >PRK11750 gltB glutamate synthase subunit alpha; Provisional | Back alignment and domain information |
|---|
Probab=99.74 E-value=1.6e-16 Score=174.45 Aligned_cols=249 Identities=21% Similarity=0.187 Sum_probs=168.0
Q ss_pred CceEecccccccccCChhhHHHHHHHHHcCCceecCCCCCCCHHHHhccCCCceEEEeeecCCHHHHHHHHHHHHHcCCC
Q 017781 72 MPIMIAPTAMQKMAHPEGEYATARAASAAGTIMTLSSWSTSSVEEVASTGPGIRFFQLYVYKDRNVVAQLVRRAERAGFK 151 (366)
Q Consensus 72 ~Pi~iApm~~~~l~~~~~e~~la~aa~~~G~~~~vs~~~~~~~e~i~~~~~~~~~~Qly~~~d~~~~~~~l~ra~~~G~~ 151 (366)
.+|.++.|++++++ ++...++|++|.+.|+....++.. ...++... .....++|+-. .-...+.+.+. .++
T Consensus 859 ~rf~~~aMSfGalS-~eA~~aLA~a~~~~G~~sntGEGG-~~p~~~~~-~~~~~i~QiaS-GrFGv~~e~l~-----~a~ 929 (1485)
T PRK11750 859 KRFDSAAMSIGALS-PEAHEALAIAMNRLGGRSNSGEGG-EDPARYGT-EKVSKIKQVAS-GRFGVTPAYLV-----NAE 929 (1485)
T ss_pred cccccccCCCCccC-HHHHHHHHHHHHHhCCceecCCCC-CCHHHHhc-ccCCeEEEccC-CcCCCCHHHhc-----cCC
Confidence 45899999998876 567889999999999998888765 44455422 22456788743 22233333333 356
Q ss_pred EEEEecCC---CCCcchhHHHhhhcCCCC-ccccccccccccCCCcccc-chhhHHHhhhccCCCC-CHHH----HHHHH
Q 017781 152 AIALTVDT---PRLGRREADIKNRFTLPP-FLTLKNFQGLDLGKMDEAN-DSGLAAYVAGQIDRSL-SWKD----VKWLQ 221 (366)
Q Consensus 152 ai~vtvd~---p~~g~r~~d~~~~~~~p~-~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~d~~~-~~~~----i~~lr 221 (366)
.|-|.+.. |..|. .+|. +++. . +++.+ .......+++..+++. +.++ |.++|
T Consensus 930 ~ieIKi~QGAKPG~GG---------~Lpg~KV~~-~--------IA~~R~~~~G~~liSP~phhdiySieDL~qlI~~Lk 991 (1485)
T PRK11750 930 VLQIKVAQGAKPGEGG---------QLPGDKVNP-L--------IARLRYSVPGVTLISPPPHHDIYSIEDLAQLIFDLK 991 (1485)
T ss_pred EEEEEecCCCCCCCCC---------cCccccCCH-H--------HHHHcCCCCCCCCCCCCCCccCCCHHHHHHHHHHHH
Confidence 77776653 21111 1221 1110 0 00000 0001112233233333 4443 66777
Q ss_pred Hhc-CCCEEEEecc-----CHHH--HHcCCcEEEEcCCCc-cC-------CCCCcchHHHHHHHHHHc-----CCCceEE
Q 017781 222 TIT-KLPILVKGVL-----TAED--VQAGAAGIIVSNHGA-RQ-------LDYVPATIMALEEVVKAT-----QGRIPVF 280 (366)
Q Consensus 222 ~~~-~~pv~vK~v~-----~~~d--~~aGad~I~vs~~gg-~~-------~~~~~~~~~~l~~i~~~~-----~~~i~vi 280 (366)
+.. +.||.||.+. +... .++|+|.|++++|.| +. .+.|.|....|.++.+.+ ++++.|+
T Consensus 992 ~~~~~~~I~VKl~a~~~vg~ia~gvaka~aD~I~IdG~~GGTGAap~~~~~~~GlP~e~gL~~~~~~L~~~glR~rv~l~ 1071 (1485)
T PRK11750 992 QVNPKALVSVKLVSEPGVGTIATGVAKAYADLITISGYDGGTGASPLTSVKYAGSPWELGLAETHQALVANGLRHKIRLQ 1071 (1485)
T ss_pred HhCCCCcEEEEEccCCCccHHHhChhhcCCCEEEEeCCCCCcccccHHHHhhCCccHHHHHHHHHHHHHhcCCCcceEEE
Confidence 776 5799999873 2222 789999999999854 32 134666556687777664 4689999
Q ss_pred EecCCCCHHHHHHHHHhCcCEEEecHHHHHHhhhc----------------------------CHHHHHHHHHHHHHHHH
Q 017781 281 LDGGVRRGTDVFKALALGASGIFIGRPVVYSLAAE----------------------------GEKGVRRVLEMLREEFE 332 (366)
Q Consensus 281 ~~GGI~~~~dv~kalalGAd~V~igr~~l~~l~~~----------------------------G~~gv~~~~~~l~~el~ 332 (366)
++||++|+.|++||++||||.|.+||++|.++.|. .++.|.+++..+.+|++
T Consensus 1072 a~Ggl~t~~Dv~kA~aLGAd~~~~gt~~lialGCi~~r~Ch~~~CPvGiaTqd~~lr~~~~~~~~~~v~nf~~~~~~el~ 1151 (1485)
T PRK11750 1072 VDGGLKTGLDVIKAAILGAESFGFGTGPMVALGCKYLRICHLNNCATGVATQDEKLRKNHYHGLPEMVMNYFEFIAEETR 1151 (1485)
T ss_pred EcCCcCCHHHHHHHHHcCCcccccchHHHHHcCCHHHHhhcCCCCCcEEeccCHHHHhhhccchHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999988762 14679999999999999
Q ss_pred HHHHHcCCCChhhhc
Q 017781 333 LAMALSGCRSLKEIT 347 (366)
Q Consensus 333 ~~m~~~G~~~l~el~ 347 (366)
..|..+|.++++|+.
T Consensus 1152 ~~la~lG~~s~~elv 1166 (1485)
T PRK11750 1152 EWMAQLGVRSLEDLI 1166 (1485)
T ss_pred HHHHHhCCCCHHHhc
Confidence 999999999999993
|
|
| >cd02801 DUS_like_FMN Dihydrouridine synthase-like (DUS-like) FMN-binding domain | Back alignment and domain information |
|---|
Probab=99.73 E-value=1.6e-16 Score=146.81 Aligned_cols=196 Identities=21% Similarity=0.249 Sum_probs=144.6
Q ss_pred ceEecccccccccCChhhHHHHHHHHHcCCceecCCCCCC------CHH--HHhccC--CCceEEEeeecCCHHHHHHHH
Q 017781 73 PIMIAPTAMQKMAHPEGEYATARAASAAGTIMTLSSWSTS------SVE--EVASTG--PGIRFFQLYVYKDRNVVAQLV 142 (366)
Q Consensus 73 Pi~iApm~~~~l~~~~~e~~la~aa~~~G~~~~vs~~~~~------~~e--~i~~~~--~~~~~~Qly~~~d~~~~~~~l 142 (366)
|+++|||.+.+ +.+++..+.++|.-.+.+++... .-. ...... +.|..+||. ..+++...+..
T Consensus 1 ~~~~aPm~~~~------~~~fR~l~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~qi~-g~~~~~~~~aa 73 (231)
T cd02801 1 KLILAPMVGVT------DLPFRLLCRRYGADLVYTEMISAKALLRGNRKRLRLLTRNPEERPLIVQLG-GSDPETLAEAA 73 (231)
T ss_pred CeEeCCCCCCc------CHHHHHHHHHHCCCEEEecCEEEhhhhhcCHHHHHhhccCccCCCEEEEEc-CCCHHHHHHHH
Confidence 68999997654 88999999999977777766321 111 111112 267889997 56788888999
Q ss_pred HHHHHcCCCEEEEecCCCCCcchhHHHhhhcCCCCccccccccccccCCCccccchhhHHHhhhccCCCCCHHHHHHHHH
Q 017781 143 RRAERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLTLKNFQGLDLGKMDEANDSGLAAYVAGQIDRSLSWKDVKWLQT 222 (366)
Q Consensus 143 ~ra~~~G~~ai~vtvd~p~~g~r~~d~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~i~~lr~ 222 (366)
++++++|++++.|++.||..-.|. .++ +..+. .++.+..+.++++|+
T Consensus 74 ~~~~~aG~d~ieln~g~p~~~~~~----~~~---------------------------G~~l~--~~~~~~~eii~~v~~ 120 (231)
T cd02801 74 KIVEELGADGIDLNMGCPSPKVTK----GGA---------------------------GAALL--KDPELVAEIVRAVRE 120 (231)
T ss_pred HHHHhcCCCEEEEeCCCCHHHHhC----CCe---------------------------eehhc--CCHHHHHHHHHHHHH
Confidence 999999999999999998531110 000 00011 244556788999999
Q ss_pred hcCCCEEEEeccCH--H-H--------HHcCCcEEEEcCCCccCCCCCcchHHHHHHHHHHcCCCceEEEecCCCCHHHH
Q 017781 223 ITKLPILVKGVLTA--E-D--------VQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDV 291 (366)
Q Consensus 223 ~~~~pv~vK~v~~~--~-d--------~~aGad~I~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~i~vi~~GGI~~~~dv 291 (366)
.++.|+.+|...++ + + .++|+|+|.+++....+...++..++.+..+++.+ ++||+++|||++.+|+
T Consensus 121 ~~~~~v~vk~r~~~~~~~~~~~~~~~l~~~Gvd~i~v~~~~~~~~~~~~~~~~~~~~i~~~~--~ipvi~~Ggi~~~~d~ 198 (231)
T cd02801 121 AVPIPVTVKIRLGWDDEEETLELAKALEDAGASALTVHGRTREQRYSGPADWDYIAEIKEAV--SIPVIANGDIFSLEDA 198 (231)
T ss_pred hcCCCEEEEEeeccCCchHHHHHHHHHHHhCCCEEEECCCCHHHcCCCCCCHHHHHHHHhCC--CCeEEEeCCCCCHHHH
Confidence 88899999976433 1 2 78899999997654323234456788888888766 7999999999999999
Q ss_pred HHHHHh-CcCEEEecHHHHH
Q 017781 292 FKALAL-GASGIFIGRPVVY 310 (366)
Q Consensus 292 ~kalal-GAd~V~igr~~l~ 310 (366)
.+++.. |||+|++||+++.
T Consensus 199 ~~~l~~~gad~V~igr~~l~ 218 (231)
T cd02801 199 LRCLEQTGVDGVMIGRGALG 218 (231)
T ss_pred HHHHHhcCCCEEEEcHHhHh
Confidence 999998 8999999999875
|
Members of this family catalyze the reduction of the 5,6-double bond of a uridine residue on tRNA. Dihydrouridine modification of tRNA is widely observed in prokaryotes and eukaryotes, and also in some archaea. Most dihydrouridines are found in the D loop of t-RNAs. The role of dihydrouridine in tRNA is currently unknown, but may increase conformational flexibility of the tRNA. It is likely that different family members have different substrate specificities, which may overlap. 1VHN, a putative flavin oxidoreductase, has high sequence similarity to DUS. The enzymatic mechanism of 1VHN is not known at the present. |
| >PF01180 DHO_dh: Dihydroorotate dehydrogenase; InterPro: IPR012135 Dihydroorotate dehydrogenase (DHOD), also known as dihydroorotate oxidase, catalyses the fourth step in de novo pyrimidine biosynthesis, the stereospecific oxidation of (S)-dihydroorotate to orotate, which is the only redox reaction in this pathway | Back alignment and domain information |
|---|
Probab=99.72 E-value=9.1e-17 Score=154.37 Aligned_cols=115 Identities=25% Similarity=0.361 Sum_probs=84.0
Q ss_pred CHHHHHHHHHhcCCCEEEEeccC---HHH-------HHcCCcEEEEcCCCcc----------CCC-------CCc----c
Q 017781 213 SWKDVKWLQTITKLPILVKGVLT---AED-------VQAGAAGIIVSNHGAR----------QLD-------YVP----A 261 (366)
Q Consensus 213 ~~~~i~~lr~~~~~pv~vK~v~~---~~d-------~~aGad~I~vs~~gg~----------~~~-------~~~----~ 261 (366)
..+.++++++..++||++|...+ ... .+.|+|+|++.|.-+. ... +|+ .
T Consensus 150 ~~~i~~~v~~~~~~Pv~vKL~p~~~~~~~~~~~~~~~~~g~~gi~~~Nt~~~~~~id~~~~~~~~~~~~gGlSG~~i~p~ 229 (295)
T PF01180_consen 150 VAEIVRAVREAVDIPVFVKLSPNFTDIEPFAIAAELAADGADGIVAINTFGQGDAIDLETRRPVLGNGFGGLSGPAIRPI 229 (295)
T ss_dssp HHHHHHHHHHHHSSEEEEEE-STSSCHHHHHHHHHHHTHTECEEEE---EEEEE-EETTTTEESSSGGEEEEEEGGGHHH
T ss_pred HHHHHHHHHhccCCCEEEEecCCCCchHHHHHHHHhhccceeEEEEecCccCcccccchhcceeeccccCCcCchhhhhH
Confidence 34567888888899999998863 221 5789999998775321 011 122 2
Q ss_pred hHHHHHHHHHHcCCCceEEEecCCCCHHHHHHHHHhCcCEEEecHHHHHHhhhcCHHHHHHHHHHHHHHHHHHH
Q 017781 262 TIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFIGRPVVYSLAAEGEKGVRRVLEMLREEFELAM 335 (366)
Q Consensus 262 ~~~~l~~i~~~~~~~i~vi~~GGI~~~~dv~kalalGAd~V~igr~~l~~l~~~G~~gv~~~~~~l~~el~~~m 335 (366)
++..+.++++.++.++|||++|||.+++|++++|.+||++|++++.+++. |+. +++.+.+||+.+|
T Consensus 230 aL~~V~~~~~~~~~~i~Iig~GGI~s~~da~e~l~aGA~~Vqv~Sal~~~----Gp~----~~~~i~~~L~~~l 295 (295)
T PF01180_consen 230 ALRWVRELRKALGQDIPIIGVGGIHSGEDAIEFLMAGASAVQVCSALIYR----GPG----VIRRINRELEEWL 295 (295)
T ss_dssp HHHHHHHHHHHTTTSSEEEEESS--SHHHHHHHHHHTESEEEESHHHHHH----GTT----HHHHHHHHHHHHH
T ss_pred HHHHHHHHHhccccceEEEEeCCcCCHHHHHHHHHhCCCHheechhhhhc----CcH----HHHHHHHHHHhhC
Confidence 45677888888866799999999999999999999999999999999874 553 6678888888877
|
DHODs can be divided into two mains classes: class 1 cytosolic enzymes found primarily in Gram-positive bacteria, and class 2 membrane-associated enzymes found primarily in eukaryotic mitochondria and Gram-negative bacteria []. The class 1 DHODs can be further divided into subclasses 1A and 1B, which differ in their structural organisation and use of electron acceptors. The 1A enzyme is a homodimer of two PyrD subunits where each subunit forms a TIM barrel fold with a bound FMN cofactor located near the top of the barrel []. Fumarate is the natural electron acceptor for this enzyme. The 1B enzyme, in contrast is a heterotetramer composed of a central, FMN-containing, PyrD homodimer resembling the 1A homodimer, and two additional PyrK subunits which contain FAD and a 2Fe-2S cluster []. These additional groups allow the enzyme to use NAD(+) as its natural electron acceptor. The class 2 membrane-associated enzymes are monomers which have the FMN-containing TIM barrel domain found in the class 1 PyrD subunit, and an additional N-terminal alpha helical domain [, ]. These enzymes use respiratory quinones as the physiological electron acceptor. This entry represents the FMN-binding subunit common to all classes of dihydroorotate dehydrogenase.; GO: 0004152 dihydroorotate dehydrogenase activity, 0006222 UMP biosynthetic process, 0055114 oxidation-reduction process; PDB: 3GYE_A 3GZ3_A 3MHU_B 3MJY_A 3TQ0_A 2B4G_C 1EP3_A 1EP2_A 1EP1_A 3I6R_A .... |
| >TIGR01036 pyrD_sub2 dihydroorotate dehydrogenase, subfamily 2 | Back alignment and domain information |
|---|
Probab=99.70 E-value=8.8e-16 Score=149.80 Aligned_cols=100 Identities=23% Similarity=0.288 Sum_probs=76.0
Q ss_pred CCHHHHHHHHHhcC-------CCEEEEeccCHH--H--------HHcCCcEEEEcCCCc-c------------CCCCCcc
Q 017781 212 LSWKDVKWLQTITK-------LPILVKGVLTAE--D--------VQAGAAGIIVSNHGA-R------------QLDYVPA 261 (366)
Q Consensus 212 ~~~~~i~~lr~~~~-------~pv~vK~v~~~~--d--------~~aGad~I~vs~~gg-~------------~~~~~~~ 261 (366)
...+.++++++.++ +||++|...+.. + .++|+|+|++.|+-- + ..-+|++
T Consensus 190 ~~~~i~~~V~~~~~~~~~~~~~Pv~vKLsP~~~~~~i~~ia~~~~~~GadGi~l~NT~~~~~~~~~~~~~~~~GGlSG~~ 269 (335)
T TIGR01036 190 ELRDLLTAVKQEQDGLRRVHRVPVLVKIAPDLTESDLEDIADSLVELGIDGVIATNTTVSRSLVQGPKNSDETGGLSGKP 269 (335)
T ss_pred HHHHHHHHHHHHHHhhhhccCCceEEEeCCCCCHHHHHHHHHHHHHhCCcEEEEECCCCccccccCccccCCCCcccCHH
Confidence 34456788887765 999999885431 2 889999999988531 0 0011222
Q ss_pred ----hHHHHHHHHHHcCCCceEEEecCCCCHHHHHHHHHhCcCEEEecHHHHHH
Q 017781 262 ----TIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFIGRPVVYS 311 (366)
Q Consensus 262 ----~~~~l~~i~~~~~~~i~vi~~GGI~~~~dv~kalalGAd~V~igr~~l~~ 311 (366)
.+..+.++++.+++++|||+.|||.+++|+.++|.+||++|++||++++.
T Consensus 270 i~p~al~~v~~~~~~~~~~ipiig~GGI~~~~da~e~l~aGA~~Vqv~ta~~~~ 323 (335)
T TIGR01036 270 LQDKSTEIIRRLYAELQGRLPIIGVGGISSAQDALEKIRAGASLLQIYSGFIYW 323 (335)
T ss_pred HHHHHHHHHHHHHHHhCCCCCEEEECCCCCHHHHHHHHHcCCcHHHhhHHHHHh
Confidence 34566677777766899999999999999999999999999999999873
|
The subfamilies 1 and 2 share extensive homology, particularly toward the C-terminus. This subfamily has a longer N-terminal region. |
| >cd02911 arch_FMN Archeal FMN-binding domain | Back alignment and domain information |
|---|
Probab=99.70 E-value=4.1e-16 Score=144.80 Aligned_cols=184 Identities=16% Similarity=0.149 Sum_probs=129.3
Q ss_pred ceEecccccccccCChhhHHHHHH-HHHcCCceecCCCCC----------------------CCHHHHh------ccCCC
Q 017781 73 PIMIAPTAMQKMAHPEGEYATARA-ASAAGTIMTLSSWST----------------------SSVEEVA------STGPG 123 (366)
Q Consensus 73 Pi~iApm~~~~l~~~~~e~~la~a-a~~~G~~~~vs~~~~----------------------~~~e~i~------~~~~~ 123 (366)
|+++|||++.+ +.+++++ +..+|+. +++..+. .+.+.+. +..+.
T Consensus 1 ~~~lApMag~t------d~~f~~~~~~~~g~~-~~Gg~~~d~~~~~aa~~~~~~~~~ef~~~~~~~~~~~~~~~~~~~~~ 73 (233)
T cd02911 1 PVALASMAGIT------DGDFCRKRADHAGLV-FLGGYNLDERTIEAARKLVKRGRKEFLPDDPLEFIEGEIKALKDSNV 73 (233)
T ss_pred CceeeecCCCc------CHHHHHhhCccCCEE-EEcccccCHHHHHHHHHHHhcCCccccccchHHHHHHHHHHhhccCC
Confidence 89999998865 6788884 5555554 4433221 1222221 11235
Q ss_pred ceEEEeeecCCHHHHHHHHHHHHHcCCCEEEEecCCCCCcchhHHHhhhcCCCCccccccccccccCCCccccchhhHHH
Q 017781 124 IRFFQLYVYKDRNVVAQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLTLKNFQGLDLGKMDEANDSGLAAY 203 (366)
Q Consensus 124 ~~~~Qly~~~d~~~~~~~l~ra~~~G~~ai~vtvd~p~~g~r~~d~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~ 203 (366)
+..+|++ ..+++.+.+.++++++. ++.|.+++.||.. .+.. .+.+..
T Consensus 74 p~~vqi~-g~~~~~~~~aa~~~~~~-~~~ielN~gCP~~-----~v~~--------------------------~g~G~~ 120 (233)
T cd02911 74 LVGVNVR-SSSLEPLLNAAALVAKN-AAILEINAHCRQP-----EMVE--------------------------AGAGEA 120 (233)
T ss_pred eEEEEec-CCCHHHHHHHHHHHhhc-CCEEEEECCCCcH-----HHhc--------------------------CCcchH
Confidence 7899998 67888888888888774 6999999999953 0000 011222
Q ss_pred hhhccCCCCCHHHHHHHHHhcCCCEEEEeccCH-HH--------HHcCCcEEEEcCCCccCCCCCcchHHHHHHHHHHcC
Q 017781 204 VAGQIDRSLSWKDVKWLQTITKLPILVKGVLTA-ED--------VQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQ 274 (366)
Q Consensus 204 ~~~~~d~~~~~~~i~~lr~~~~~pv~vK~v~~~-~d--------~~aGad~I~vs~~gg~~~~~~~~~~~~l~~i~~~~~ 274 (366)
+. .+++...+.++.+|+ .++||.+|...+. ++ .++|+|+|.+++.. .+....++.+++++ +
T Consensus 121 Ll--~~p~~l~eiv~avr~-~~~pVsvKir~g~~~~~~~la~~l~~aG~d~ihv~~~~----~g~~ad~~~I~~i~--~- 190 (233)
T cd02911 121 LL--KDPERLSEFIKALKE-TGVPVSVKIRAGVDVDDEELARLIEKAGADIIHVDAMD----PGNHADLKKIRDIS--T- 190 (233)
T ss_pred Hc--CCHHHHHHHHHHHHh-cCCCEEEEEcCCcCcCHHHHHHHHHHhCCCEEEECcCC----CCCCCcHHHHHHhc--C-
Confidence 22 256666788999998 5999999987554 22 89999998876532 11345677777775 4
Q ss_pred CCceEEEecCCCCHHHHHHHHHhCcCEEEecHH
Q 017781 275 GRIPVFLDGGVRRGTDVFKALALGASGIFIGRP 307 (366)
Q Consensus 275 ~~i~vi~~GGI~~~~dv~kalalGAd~V~igr~ 307 (366)
++|||++|||.+++|+.+++..|||+||+||+
T Consensus 191 -~ipVIgnGgI~s~eda~~~l~~GaD~VmiGR~ 222 (233)
T cd02911 191 -ELFIIGNNSVTTIESAKEMFSYGADMVSVARA 222 (233)
T ss_pred -CCEEEEECCcCCHHHHHHHHHcCCCEEEEcCC
Confidence 79999999999999999999999999999995
|
This family of archaeal proteins are part of the NAD(P)H-dependent flavin oxidoreductase (oxidored) FMN-binding family that reduce a range of alternative electron acceptors. Most use FAD/FMN as a cofactor and NAD(P)H as electron donor. Some contain 4Fe-4S cluster to transfer electron from FAD to FMN. The specific function of this group is unknown. |
| >KOG2550 consensus IMP dehydrogenase/GMP reductase [Nucleotide transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.66 E-value=5.9e-16 Score=149.08 Aligned_cols=302 Identities=22% Similarity=0.301 Sum_probs=186.0
Q ss_pred HhcccceeeeccccC-CCCCCccceeEc-CcccCCceEecccccccccCChhhHHHHHHHHHcCCceecCCCCCCCHHHH
Q 017781 40 RNAFSRILFRPRILI-DVSKIDMNTTVL-GFKISMPIMIAPTAMQKMAHPEGEYATARAASAAGTIMTLSSWSTSSVEEV 117 (366)
Q Consensus 40 ~~~f~~i~l~pr~l~-~~~~vd~st~l~-g~~l~~Pi~iApm~~~~l~~~~~e~~la~aa~~~G~~~~vs~~~~~~~e~i 117 (366)
.-.|+++.|+|.... ..++|||++.|- ..+++.|++.|||.-.+ |..+|.+.+.+|...++ +-+|++|+-
T Consensus 29 ~LtynDfliLPg~idF~s~eVsL~t~ltr~itl~tPlvsSpMDTVt------es~MAiaMAl~ggIg~I--HhNctpe~Q 100 (503)
T KOG2550|consen 29 GLTYNDFLILPGFIDFASDEVSLQTKLTRNITLNTPLVSSPMDTVT------ESEMAIAMALLGGIGFI--HHNCTPEDQ 100 (503)
T ss_pred CccccceeecccccccccccceeehhhhhcccccCceeccCCcccc------hhHHHHHHHhcCCceee--ecCCCHHHH
Confidence 467999999999874 556999999874 57899999999995433 78999999999988887 346776654
Q ss_pred hcc----C--CCceEEEeeecCCHHHHHHHHHHHHHcCCCEEEEecCCCCCcc-------hhHHHhhh------------
Q 017781 118 AST----G--PGIRFFQLYVYKDRNVVAQLVRRAERAGFKAIALTVDTPRLGR-------READIKNR------------ 172 (366)
Q Consensus 118 ~~~----~--~~~~~~Qly~~~d~~~~~~~l~ra~~~G~~ai~vtvd~p~~g~-------r~~d~~~~------------ 172 (366)
+.. . .+.+.-+-.+........+.++.-+..|+..+-+|-|.-..++ |.-+....
T Consensus 101 A~~v~~vK~~~~g~~~~p~v~sp~~tvg~v~~~k~~~gF~g~pvTe~g~~~~KLvG~vtsrdi~f~~~~~~~~~~vmt~~ 180 (503)
T KOG2550|consen 101 ADMVRRVKNYENGFINNPIVISPTTTVGEVKEAKEKHGFSGIPVTEDGKRGSKLVGIITSRDIQFLEDNSLLVSDVMTKN 180 (503)
T ss_pred HHHHHHHHHhhcccccCCcccCCcccchhhhhhcccccccccccccCCcccceeEEEEehhhhhhhhcccchhhhhcccc
Confidence 321 1 1111111111111122233333333467776666643211100 11000000
Q ss_pred -cCCCCccccccc---------------------------------cccccC--CCcc---------ccc----------
Q 017781 173 -FTLPPFLTLKNF---------------------------------QGLDLG--KMDE---------AND---------- 197 (366)
Q Consensus 173 -~~~p~~~~~~~~---------------------------------~~~~~~--~~~~---------~~~---------- 197 (366)
+..|.+++++.. .++++. ...+ ++.
T Consensus 181 ~~~~~~gi~l~~~neiL~~~kkGkl~iv~~~gelva~~~rtDl~k~~~yPlask~~~kqll~gAaiGTre~dK~rl~ll~ 260 (503)
T KOG2550|consen 181 PVTGAQGITLKEANEILKKIKKGKLPVVDDKGELVAMLSRTDLMKNRDYPLASKDSTKQLLCGAAIGTRDDDKERLDLLV 260 (503)
T ss_pred cccccccccHHHHHHHHHhhhcCCcceeccCCceeeeeehhhhhhhcCCCccccCcccceeeeeccccccchhHHHHHhh
Confidence 001111111100 000000 0000 000
Q ss_pred -hhhH--HHhhhccCCCCCHHHHHHHHHhc-CCCEEEEeccCHHH----HHcCCcEEEEcCCCcc----C--CCCCcchH
Q 017781 198 -SGLA--AYVAGQIDRSLSWKDVKWLQTIT-KLPILVKGVLTAED----VQAGAAGIIVSNHGAR----Q--LDYVPATI 263 (366)
Q Consensus 198 -~~~~--~~~~~~~d~~~~~~~i~~lr~~~-~~pv~vK~v~~~~d----~~aGad~I~vs~~gg~----~--~~~~~~~~ 263 (366)
.+.- -..++++...+..+.|+|+|+.+ .+.|+-..+.+.+. +++|||++.|....|. | +..|.|..
T Consensus 261 ~aGvdvviLDSSqGnS~~qiemik~iK~~yP~l~ViaGNVVT~~qa~nLI~aGaDgLrVGMGsGSiCiTqevma~GrpQ~ 340 (503)
T KOG2550|consen 261 QAGVDVVILDSSQGNSIYQLEMIKYIKETYPDLQIIAGNVVTKEQAANLIAAGADGLRVGMGSGSICITQKVMACGRPQG 340 (503)
T ss_pred hcCCcEEEEecCCCcchhHHHHHHHHHhhCCCceeeccceeeHHHHHHHHHccCceeEeccccCceeeeceeeeccCCcc
Confidence 0000 01123344556678899999998 46777777777664 9999999999765553 2 45677777
Q ss_pred HHHHHHHHHcC-CCceEEEecCCCCHHHHHHHHHhCcCEEEecHHH--------------------HHH------hh---
Q 017781 264 MALEEVVKATQ-GRIPVFLDGGVRRGTDVFKALALGASGIFIGRPV--------------------VYS------LA--- 313 (366)
Q Consensus 264 ~~l~~i~~~~~-~~i~vi~~GGI~~~~dv~kalalGAd~V~igr~~--------------------l~~------l~--- 313 (366)
.++.++++... -.+|||+||||.+..+++|||.+||+.||+|.-+ .++ +.
T Consensus 341 TAVy~va~~A~q~gvpviADGGiq~~Ghi~KAl~lGAstVMmG~lLAgtTEapGeyf~~~g~rlKkyrGMGSl~AM~~~s 420 (503)
T KOG2550|consen 341 TAVYKVAEFANQFGVPCIADGGIQNVGHVVKALGLGASTVMMGGLLAGTTEAPGEYFFRDGVRLKKYRGMGSLDAMESSS 420 (503)
T ss_pred cchhhHHHHHHhcCCceeecCCcCccchhHhhhhcCchhheecceeeeeeccCcceeeecCeeehhccCcchHHHHhhhh
Confidence 77777776543 2799999999999999999999999999999744 111 11
Q ss_pred -------------hcCH-------HHHHHHHHHHHHHHHHHHHHcCCCChhhhccc
Q 017781 314 -------------AEGE-------KGVRRVLEMLREEFELAMALSGCRSLKEITRD 349 (366)
Q Consensus 314 -------------~~G~-------~gv~~~~~~l~~el~~~m~~~G~~~l~el~~~ 349 (366)
++|. -.+.+++..+...++..++..|++++++++..
T Consensus 421 ~~rY~~e~dkvkiAQGVsg~v~dKGsv~kfipyl~~giqh~cqdiGa~sL~~l~~~ 476 (503)
T KOG2550|consen 421 QKRYFSEVDKVKIAQGVSGSVQDKGSVQKFIPYLLAGIQHSCQDIGARSLKELREM 476 (503)
T ss_pred hhccccccceEeeccCcEEEeccCcchhhhHHHHHHHHhhhhhhhhHHHHHHHHHH
Confidence 0011 23888999999999999999999999999854
|
|
| >KOG1436 consensus Dihydroorotate dehydrogenase [Nucleotide transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.66 E-value=3.5e-15 Score=139.60 Aligned_cols=288 Identities=21% Similarity=0.291 Sum_probs=169.3
Q ss_pred hhhHHHhHhcccceeeeccccCCCCCCccceeEcCcccCCceEecccccccccCChhhHHHHHHHHHcCCcee-cCCCCC
Q 017781 33 QWTLQENRNAFSRILFRPRILIDVSKIDMNTTVLGFKISMPIMIAPTAMQKMAHPEGEYATARAASAAGTIMT-LSSWST 111 (366)
Q Consensus 33 ~~t~~~N~~~f~~i~l~pr~l~~~~~vd~st~l~g~~l~~Pi~iApm~~~~l~~~~~e~~la~aa~~~G~~~~-vs~~~~ 111 (366)
|.++|--. .+..|.|.||.-.. ++-.+.++++|+++++||++|+ |++ .+..-.......|.+++ +++...
T Consensus 58 E~sHrlAv-~aas~gl~Pr~~~~-d~~~L~~k~~g~~f~NPiglAA-Gfd------k~~eaidgL~~~gfG~ieigSvTp 128 (398)
T KOG1436|consen 58 EFSHRLAV-LAASWGLLPRDRVA-DDASLETKVLGRKFSNPIGLAA-GFD------KNAEAIDGLANSGFGFIEIGSVTP 128 (398)
T ss_pred HHHHHHHH-HHHHhCCCchhccC-CccchhhHHhhhhccCchhhhh-ccC------cchHHHHHHHhCCCceEEeccccc
Confidence 34444333 24577888876432 3556788899999999999998 443 24445555666888776 555554
Q ss_pred CCHHHHhccCCCceEEEee---------ecCC--HHHHHHHHHHHHHcC---C-CEEEEecCCCC-CcchhHHHhhhcCC
Q 017781 112 SSVEEVASTGPGIRFFQLY---------VYKD--RNVVAQLVRRAERAG---F-KAIALTVDTPR-LGRREADIKNRFTL 175 (366)
Q Consensus 112 ~~~e~i~~~~~~~~~~Qly---------~~~d--~~~~~~~l~ra~~~G---~-~ai~vtvd~p~-~g~r~~d~~~~~~~ 175 (366)
.+ ++.+|.|+.|.|- ..++ .+...+.++..+.+. . ..+.|++..-. ...-..|+..+..
T Consensus 129 ~p----qeGNPkPRvfrl~ed~~vINryGfns~Gi~~vl~rl~~~r~~~~~e~~~~lGVnlgknk~s~d~~~dy~~gV~- 203 (398)
T KOG1436|consen 129 KP----QEGNPKPRVFRLPEDLAVINRYGFNSEGIDAVLQRLRAKRQAKYPEAPAKLGVNLGKNKTSEDAILDYVEGVR- 203 (398)
T ss_pred CC----CCCCCCCceEecccccchhhccCCCcccHHHHHHHHHHHHHhcCCCccccceeeeccccCCcchHHHHHHHhh-
Confidence 44 4456666666653 1112 122222221112111 1 11233333222 1223344444432
Q ss_pred CCccccccccccccCCCccccchhhHHHhhhccCCCCC--HHHHHHHHHh--c--CCCEEEEeccCH--H---H-----H
Q 017781 176 PPFLTLKNFQGLDLGKMDEANDSGLAAYVAGQIDRSLS--WKDVKWLQTI--T--KLPILVKGVLTA--E---D-----V 239 (366)
Q Consensus 176 p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~--~~~i~~lr~~--~--~~pv~vK~v~~~--~---d-----~ 239 (366)
....+.++...+++..++.+.... + .+.++. ...+-.-+.. + +.|+++|...+. + | .
T Consensus 204 ----~~g~~adylviNvSsPNtpGlr~l-q--~k~~L~~ll~~v~~a~~~~~~~~~~pvl~kiapDL~~~el~dia~v~k 276 (398)
T KOG1436|consen 204 ----VFGPFADYLVINVSSPNTPGLRSL-Q--KKSDLRKLLTKVVQARDKLPLGKKPPVLVKIAPDLSEKELKDIALVVK 276 (398)
T ss_pred ----hcccccceEEEeccCCCCcchhhh-h--hHHHHHHHHHHHHHHHhccccCCCCceEEEeccchhHHHHHHHHHHHH
Confidence 111122222222333333322211 1 111111 1111122222 1 459999987533 2 2 6
Q ss_pred HcCCcEEEEcCCC-ccC----------CC---CCcc----hHHHHHHHHHHcCCCceEEEecCCCCHHHHHHHHHhCcCE
Q 017781 240 QAGAAGIIVSNHG-ARQ----------LD---YVPA----TIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASG 301 (366)
Q Consensus 240 ~aGad~I~vs~~g-g~~----------~~---~~~~----~~~~l~~i~~~~~~~i~vi~~GGI~~~~dv~kalalGAd~ 301 (366)
+.+.|+++++|.. .|. -. +|++ +.+.++++...+++++|||.+|||.||.|+.+-+.+||+.
T Consensus 277 k~~idg~IvsnttVsrp~~~~~~~~~~etGGLsG~plk~~st~~vR~mY~lt~g~IpiIG~GGV~SG~DA~EkiraGASl 356 (398)
T KOG1436|consen 277 KLNIDGLIVSNTTVSRPKASLVNKLKEETGGLSGPPLKPISTNTVRAMYTLTRGKIPIIGCGGVSSGKDAYEKIRAGASL 356 (398)
T ss_pred HhCccceeecCceeecCccccccccccccCCCCCCccchhHHHHHHHHHHhccCCCceEeecCccccHhHHHHHhcCchH
Confidence 7899999999854 220 01 2222 4567888888888899999999999999999999999999
Q ss_pred EEecHHHHHHhhhcCHHHHHHHHHHHHHHHHHHHHHcCCCChhhhccc
Q 017781 302 IFIGRPVVYSLAAEGEKGVRRVLEMLREEFELAMALSGCRSLKEITRD 349 (366)
Q Consensus 302 V~igr~~l~~l~~~G~~gv~~~~~~l~~el~~~m~~~G~~~l~el~~~ 349 (366)
|+++++|.|. |+. +++.++.||...|...|+.++.|+.+.
T Consensus 357 vQlyTal~ye----Gp~----i~~kIk~El~~ll~~kG~t~v~d~iG~ 396 (398)
T KOG1436|consen 357 VQLYTALVYE----GPA----IIEKIKRELSALLKAKGFTSVDDAIGK 396 (398)
T ss_pred HHHHHHHhhc----Cch----hHHHHHHHHHHHHHhcCCCcHHHhccC
Confidence 9999998763 653 788999999999999999999998764
|
|
| >TIGR03151 enACPred_II putative enoyl-(acyl-carrier-protein) reductase II | Back alignment and domain information |
|---|
Probab=99.65 E-value=1.4e-14 Score=139.79 Aligned_cols=179 Identities=21% Similarity=0.240 Sum_probs=126.6
Q ss_pred EcCcccCCceEecccccccccCChhhHHHHHHHHHcCCceecCCCCCCCHHHH-------hccCCCceEEEeeecCCHHH
Q 017781 65 VLGFKISMPIMIAPTAMQKMAHPEGEYATARAASAAGTIMTLSSWSTSSVEEV-------ASTGPGIRFFQLYVYKDRNV 137 (366)
Q Consensus 65 l~g~~l~~Pi~iApm~~~~l~~~~~e~~la~aa~~~G~~~~vs~~~~~~~e~i-------~~~~~~~~~~Qly~~~d~~~ 137 (366)
++|. ..||+.|||++.+ +..++.++.++|...+++... .+.+++ ++....|+.+++....+.
T Consensus 7 ~lgi--~~Pii~apM~~~s------~~~la~avs~aGglG~l~~~~-~~~~~l~~~i~~~~~~t~~pfgvn~~~~~~~-- 75 (307)
T TIGR03151 7 LLGI--EYPIFQGGMAWVA------TGSLAAAVSNAGGLGIIGAGN-APPDVVRKEIRKVKELTDKPFGVNIMLLSPF-- 75 (307)
T ss_pred HhCC--CCCEEcCCCCCCC------CHHHHHHHHhCCCcceecccc-CCHHHHHHHHHHHHHhcCCCcEEeeecCCCC--
Confidence 4454 4999999998643 568999999999998887532 344433 222235666665432211
Q ss_pred HHHHHHHHHHcCCCEEEEecCCCCCcchhHHHhhhcCCCCccccccccccccCCCccccchhhHHHhhhccCCCCCHHHH
Q 017781 138 VAQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLTLKNFQGLDLGKMDEANDSGLAAYVAGQIDRSLSWKDV 217 (366)
Q Consensus 138 ~~~~l~ra~~~G~~ai~vtvd~p~~g~r~~d~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~i 217 (366)
..+.++.+.+.|++.+.++.. .| .+.+
T Consensus 76 ~~~~~~~~~~~~v~~v~~~~g--------------------------------------------------~p---~~~i 102 (307)
T TIGR03151 76 VDELVDLVIEEKVPVVTTGAG--------------------------------------------------NP---GKYI 102 (307)
T ss_pred HHHHHHHHHhCCCCEEEEcCC--------------------------------------------------Cc---HHHH
Confidence 234556566677766543211 11 2467
Q ss_pred HHHHHhcCCCEEEEeccCHHH----HHcCCcEEEEcCC--CccCCCCCcchHHHHHHHHHHcCCCceEEEecCCCCHHHH
Q 017781 218 KWLQTITKLPILVKGVLTAED----VQAGAAGIIVSNH--GARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDV 291 (366)
Q Consensus 218 ~~lr~~~~~pv~vK~v~~~~d----~~aGad~I~vs~~--gg~~~~~~~~~~~~l~~i~~~~~~~i~vi~~GGI~~~~dv 291 (366)
+++|+. +++++. .+.+.++ .++|+|+|++.++ ||+. +..+++..++++++.+ ++|||++|||.++.|+
T Consensus 103 ~~lk~~-g~~v~~-~v~s~~~a~~a~~~GaD~Ivv~g~eagGh~--g~~~~~~ll~~v~~~~--~iPviaaGGI~~~~~~ 176 (307)
T TIGR03151 103 PRLKEN-GVKVIP-VVASVALAKRMEKAGADAVIAEGMESGGHI--GELTTMALVPQVVDAV--SIPVIAAGGIADGRGM 176 (307)
T ss_pred HHHHHc-CCEEEE-EcCCHHHHHHHHHcCCCEEEEECcccCCCC--CCCcHHHHHHHHHHHh--CCCEEEECCCCCHHHH
Confidence 778775 666665 4566665 8999999999886 3432 2345789999999888 7999999999999999
Q ss_pred HHHHHhCcCEEEecHHHHHHhh
Q 017781 292 FKALALGASGIFIGRPVVYSLA 313 (366)
Q Consensus 292 ~kalalGAd~V~igr~~l~~l~ 313 (366)
.+++++|||+|++|+.|+....
T Consensus 177 ~~al~~GA~gV~iGt~f~~t~E 198 (307)
T TIGR03151 177 AAAFALGAEAVQMGTRFLCAKE 198 (307)
T ss_pred HHHHHcCCCEeecchHHhcccc
Confidence 9999999999999999987543
|
This oxidoreductase of the 2-nitropropane dioxygenase family (pfam03060) is commonly found in apparent operons with genes involved in fatty acid biosynthesis. Furthermore, this genomic context generally includes the fabG 3-oxoacyl-[ACP] reductase and lacks the fabI enoyl-[ACP] reductase. |
| >PF03060 NMO: Nitronate monooxygenase; InterPro: IPR004136 2-Nitropropane dioxygenase (1 | Back alignment and domain information |
|---|
Probab=99.62 E-value=3.8e-14 Score=138.29 Aligned_cols=196 Identities=22% Similarity=0.261 Sum_probs=110.6
Q ss_pred EcCcccCCceEecccccccccCChhhHHHHHHHHHcCCceecCCCCCCCHHHH-------hccCCCceEEEeeecCCHHH
Q 017781 65 VLGFKISMPIMIAPTAMQKMAHPEGEYATARAASAAGTIMTLSSWSTSSVEEV-------ASTGPGIRFFQLYVYKDRNV 137 (366)
Q Consensus 65 l~g~~l~~Pi~iApm~~~~l~~~~~e~~la~aa~~~G~~~~vs~~~~~~~e~i-------~~~~~~~~~~Qly~~~d~~~ 137 (366)
++|. ..||+.+||++.+ ...|+-+.+++|...+++.. ..+.+++ ++....|+.+++........
T Consensus 7 ~lgi--~~PIiqapM~~is------~~~LaaAVs~aGglG~l~~~-~~~~~~l~~~i~~~~~~t~~pfgvnl~~~~~~~~ 77 (330)
T PF03060_consen 7 LLGI--KYPIIQAPMGGIS------TPELAAAVSNAGGLGFLGAG-GLTPEQLREEIRKIRALTDKPFGVNLFLPPPDPA 77 (330)
T ss_dssp HHT---SSSEEE---TTTS------SHHHHHHHHHTTSBEEEECT-TSSHHHHHHHHHHHHHH-SS-EEEEEETTSTTHH
T ss_pred HhCC--CcCEEcCCCCCCC------hHHHHHHHHhCCCEeecccc-ccChHHHHHHHHHHHhhccccccccccccCcccc
Confidence 4454 4899999998733 55899999999999999853 3444433 23334578888765443322
Q ss_pred HH-H---------HHHHHHHcCCCEEEEecCCCCCcchhHHHhhhcCCCCccccccccccccCCCccccchhhHHHhhhc
Q 017781 138 VA-Q---------LVRRAERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLTLKNFQGLDLGKMDEANDSGLAAYVAGQ 207 (366)
Q Consensus 138 ~~-~---------~l~ra~~~G~~ai~vtvd~p~~g~r~~d~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 207 (366)
.. + .++...+.+.. -...+..-+.... ..+. .
T Consensus 78 ~~~~~~~~~~~~~~~~~~~~~~~~-------------~~~~~~~~~~~~~------------------------~~v~-~ 119 (330)
T PF03060_consen 78 DEEDAWPKELGNAVLELCIEEGVP-------------FEEQLDVALEAKP------------------------DVVS-F 119 (330)
T ss_dssp HH-HHHHHHTHHHHHHHHHHTT-S-------------HHHHHHHHHHS--------------------------SEEE-E
T ss_pred hhhhhhhhhhHHHHHHHHHHhCcc-------------cccccccccccce------------------------EEEE-e
Confidence 22 0 11111222211 0000000000000 0000 0
Q ss_pred cCCCCCHHHHHHHHHhcCCCEEEEeccCHHH----HHcCCcEEEEcCC--CccCC-CCCcchHHHHHHHHHHcCCCceEE
Q 017781 208 IDRSLSWKDVKWLQTITKLPILVKGVLTAED----VQAGAAGIIVSNH--GARQL-DYVPATIMALEEVVKATQGRIPVF 280 (366)
Q Consensus 208 ~d~~~~~~~i~~lr~~~~~pv~vK~v~~~~d----~~aGad~I~vs~~--gg~~~-~~~~~~~~~l~~i~~~~~~~i~vi 280 (366)
.......+.++.+++. ++.++. .+.+.++ .++|+|+|++.+. ||+.. +.+ +++.+++++++.+ ++|||
T Consensus 120 ~~G~p~~~~i~~l~~~-gi~v~~-~v~s~~~A~~a~~~G~D~iv~qG~eAGGH~g~~~~-~~~~L~~~v~~~~--~iPVi 194 (330)
T PF03060_consen 120 GFGLPPPEVIERLHAA-GIKVIP-QVTSVREARKAAKAGADAIVAQGPEAGGHRGFEVG-STFSLLPQVRDAV--DIPVI 194 (330)
T ss_dssp ESSSC-HHHHHHHHHT-T-EEEE-EESSHHHHHHHHHTT-SEEEEE-TTSSEE---SSG--HHHHHHHHHHH---SS-EE
T ss_pred ecccchHHHHHHHHHc-CCcccc-ccCCHHHHHHhhhcCCCEEEEeccccCCCCCcccc-ceeeHHHHHhhhc--CCcEE
Confidence 0111234567888774 776666 4567766 9999999999874 56543 222 5788999999988 79999
Q ss_pred EecCCCCHHHHHHHHHhCcCEEEecHHHHHHh
Q 017781 281 LDGGVRRGTDVFKALALGASGIFIGRPVVYSL 312 (366)
Q Consensus 281 ~~GGI~~~~dv~kalalGAd~V~igr~~l~~l 312 (366)
+.|||.++.+++.+|++|||+|++|+.|+..-
T Consensus 195 aAGGI~dg~~iaaal~lGA~gV~~GTrFl~t~ 226 (330)
T PF03060_consen 195 AAGGIADGRGIAAALALGADGVQMGTRFLATE 226 (330)
T ss_dssp EESS--SHHHHHHHHHCT-SEEEESHHHHTST
T ss_pred EecCcCCHHHHHHHHHcCCCEeecCCeEEecc
Confidence 99999999999999999999999999998653
|
13.11.32 from EC) catalyses the oxidation of nitroalkanes into their corresponding carbonyl compounds and nitrite using eithr FAD or FMN as a cofactor []. This entry also includes fatty acid synthase subunit beta (2.3.1.86 from EC), which catalyses the formation of long- chain fatty acids from acetyl-CoA, malonyl-CoA and NADPH. The beta subunit contains domains for: [acyl-carrier protein] acetyltransferase and malonyltransferase, S-acyl fatty acid synthase thioesterase, enoyl-[acyl-carrier protein] reductase, and 3-hydroxypalmitoyl-[acyl-carrier protein] dehydratase. ; GO: 0018580 nitronate monooxygenase activity, 0055114 oxidation-reduction process; PDB: 2Z6I_B 2Z6J_B 3BW2_A 3BW3_A 3BW4_A 2GJL_A 2GJN_A 3BO9_A. |
| >KOG2335 consensus tRNA-dihydrouridine synthase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=99.59 E-value=2.6e-14 Score=136.86 Aligned_cols=194 Identities=23% Similarity=0.257 Sum_probs=144.7
Q ss_pred EecccccccccCChhhHHHHHHHHHcCCceecCCCCCC--CH--HHHh----ccCC--CceEEEeeecCCHHHHHHHHHH
Q 017781 75 MIAPTAMQKMAHPEGEYATARAASAAGTIMTLSSWSTS--SV--EEVA----STGP--GIRFFQLYVYKDRNVVAQLVRR 144 (366)
Q Consensus 75 ~iApm~~~~l~~~~~e~~la~aa~~~G~~~~vs~~~~~--~~--e~i~----~~~~--~~~~~Qly~~~d~~~~~~~l~r 144 (366)
++|||-..+ +.++++.++..|.-.+.+.|... -+ |... ...+ .|.++|+- .+|++.+.+..+.
T Consensus 22 i~APMvd~S------~l~fR~L~R~y~~~l~yTpMi~a~~fv~~ek~r~~~~st~~~D~PLIvQf~-~ndp~~ll~Aa~l 94 (358)
T KOG2335|consen 22 IVAPMVDYS------ELAFRRLVRLYGADLLYTPMIHAKTFVHSEKYRDSELSTSPEDRPLIVQFG-GNDPENLLKAARL 94 (358)
T ss_pred ccCCccccc------HHHHHHHHHHhCCceEechHHHHHHHhcCccchhhhcccCCCCCceEEEEc-CCCHHHHHHHHHH
Confidence 689996544 89999999999988887766321 00 1111 1122 68999976 6899998888888
Q ss_pred HHHcCCCEEEEecCCCCCcchhHHHhhhcCCCCccccccccccccCCCccccchhhHHHhhhccCCCCCHHHHHHHHHhc
Q 017781 145 AERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLTLKNFQGLDLGKMDEANDSGLAAYVAGQIDRSLSWKDVKWLQTIT 224 (366)
Q Consensus 145 a~~~G~~ai~vtvd~p~~g~r~~d~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~i~~lr~~~ 224 (366)
++..+ ++|.+|++||.. . -.+.+ .+.+++ .++++.-+.|+.+++.+
T Consensus 95 v~~y~-D~idlNcGCPq~---~-a~~g~---------------------------yGa~L~--~~~eLv~e~V~~v~~~l 140 (358)
T KOG2335|consen 95 VQPYC-DGIDLNCGCPQK---V-AKRGG---------------------------YGAFLM--DNPELVGEMVSAVRANL 140 (358)
T ss_pred hhhhc-CcccccCCCCHH---H-HhcCC---------------------------ccceec--cCHHHHHHHHHHHHhhc
Confidence 88776 999999999942 0 00011 122233 24555667899999999
Q ss_pred CCCEEEEeccCH--HH--------HHcCCcEEEEcCCCccCC--CCCcchHHHHHHHHHHcCCCceEEEecCCCCHHHHH
Q 017781 225 KLPILVKGVLTA--ED--------VQAGAAGIIVSNHGARQL--DYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVF 292 (366)
Q Consensus 225 ~~pv~vK~v~~~--~d--------~~aGad~I~vs~~gg~~~--~~~~~~~~~l~~i~~~~~~~i~vi~~GGI~~~~dv~ 292 (366)
+.||.+|+.... ++ .++|++.++|+++...+- -.++..|+.+..+++.+++ +|||++|+|.+..|+-
T Consensus 141 ~~pVs~KIRI~~d~~kTvd~ak~~e~aG~~~ltVHGRtr~~kg~~~~pad~~~i~~v~~~~~~-ipviaNGnI~~~~d~~ 219 (358)
T KOG2335|consen 141 NVPVSVKIRIFVDLEKTVDYAKMLEDAGVSLLTVHGRTREQKGLKTGPADWEAIKAVRENVPD-IPVIANGNILSLEDVE 219 (358)
T ss_pred CCCeEEEEEecCcHHHHHHHHHHHHhCCCcEEEEecccHHhcCCCCCCcCHHHHHHHHHhCcC-CcEEeeCCcCcHHHHH
Confidence 999999987543 22 899999999977544333 2678899999999999964 9999999999999999
Q ss_pred HHHH-hCcCEEEecHHHHH
Q 017781 293 KALA-LGASGIFIGRPVVY 310 (366)
Q Consensus 293 kala-lGAd~V~igr~~l~ 310 (366)
.++. .|||+||.||..|+
T Consensus 220 ~~~~~tG~dGVM~arglL~ 238 (358)
T KOG2335|consen 220 RCLKYTGADGVMSARGLLY 238 (358)
T ss_pred HHHHHhCCceEEecchhhc
Confidence 9999 99999999995543
|
|
| >TIGR00736 nifR3_rel_arch TIM-barrel protein, putative | Back alignment and domain information |
|---|
Probab=99.55 E-value=8e-14 Score=128.72 Aligned_cols=149 Identities=14% Similarity=0.127 Sum_probs=111.5
Q ss_pred CceEEEeeecCCHHHHHHHHHHHHHcCCCEEEEecCCCCCcchhHHHhhhcCCCCccccccccccccCCCccccchhhHH
Q 017781 123 GIRFFQLYVYKDRNVVAQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLTLKNFQGLDLGKMDEANDSGLAA 202 (366)
Q Consensus 123 ~~~~~Qly~~~d~~~~~~~l~ra~~~G~~ai~vtvd~p~~g~r~~d~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~ 202 (366)
.+..+|+- ..+++...+.++.+.+ +++.+.|++.||+. .+. + .+.+.
T Consensus 68 ~~vivnv~-~~~~ee~~~~a~~v~~-~~d~IdiN~gCP~~-----~v~-----------~---------------~g~G~ 114 (231)
T TIGR00736 68 ALVSVNVR-FVDLEEAYDVLLTIAE-HADIIEINAHCRQP-----EIT-----------E---------------IGIGQ 114 (231)
T ss_pred CCEEEEEe-cCCHHHHHHHHHHHhc-CCCEEEEECCCCcH-----HHc-----------C---------------CCCch
Confidence 57899986 4688888888887765 89999999999963 000 0 01112
Q ss_pred HhhhccCCCCCHHHHHHHHHhcCCCEEEEeccCHH--H--------HHcCCcEEEEcCCCccCCCCCcchHHHHHHHHHH
Q 017781 203 YVAGQIDRSLSWKDVKWLQTITKLPILVKGVLTAE--D--------VQAGAAGIIVSNHGARQLDYVPATIMALEEVVKA 272 (366)
Q Consensus 203 ~~~~~~d~~~~~~~i~~lr~~~~~pv~vK~v~~~~--d--------~~aGad~I~vs~~gg~~~~~~~~~~~~l~~i~~~ 272 (366)
.+. .|++...+.++.+++ .++||.+|...... + .++|+|+|+|+. +.. ..+...++.+.++++.
T Consensus 115 ~Ll--~dp~~l~~iv~av~~-~~~PVsvKiR~~~~~~~~~~~a~~l~~aGad~i~Vd~--~~~-g~~~a~~~~I~~i~~~ 188 (231)
T TIGR00736 115 ELL--KNKELLKEFLTKMKE-LNKPIFVKIRGNCIPLDELIDALNLVDDGFDGIHVDA--MYP-GKPYADMDLLKILSEE 188 (231)
T ss_pred hhc--CCHHHHHHHHHHHHc-CCCcEEEEeCCCCCcchHHHHHHHHHHcCCCEEEEee--CCC-CCchhhHHHHHHHHHh
Confidence 222 256666677888885 58999999886332 1 899999999953 211 1122689999999998
Q ss_pred cCCCceEEEecCCCCHHHHHHHHHhCcCEEEecHHHHHH
Q 017781 273 TQGRIPVFLDGGVRRGTDVFKALALGASGIFIGRPVVYS 311 (366)
Q Consensus 273 ~~~~i~vi~~GGI~~~~dv~kalalGAd~V~igr~~l~~ 311 (366)
++ .+|||++|||++.+|+.+++..|||+||+||+.+.+
T Consensus 189 ~~-~ipIIgNGgI~s~eda~e~l~~GAd~VmvgR~~l~~ 226 (231)
T TIGR00736 189 FN-DKIIIGNNSIDDIESAKEMLKAGADFVSVARAILKG 226 (231)
T ss_pred cC-CCcEEEECCcCCHHHHHHHHHhCCCeEEEcHhhccC
Confidence 73 399999999999999999999999999999988753
|
Members of this family show a distant relationship by PSI-BLAST to alpha/beta (TIM) barrel enzymes such as dihydroorotate dehydrogenase and glycolate oxidase. At least two closely related but well-separable families among the bacteria, the nifR3/yhdG family and the yjbN family, share a more distant relationship to this family of shorter, exclusively archaeal proteins. |
| >cd04730 NPD_like 2-Nitropropane dioxygenase (NPD), one of the nitroalkane oxidizing enzyme families, catalyzes oxidative denitrification of nitroalkanes to their corresponding carbonyl compounds and nitrites | Back alignment and domain information |
|---|
Probab=99.46 E-value=8.8e-12 Score=115.61 Aligned_cols=184 Identities=22% Similarity=0.267 Sum_probs=123.9
Q ss_pred CCceEecccccccccCChhhHHHHHHHHHcCCceecCCCCCCCHHHH-------hccCCCceEEEeeecCCHHHHHHHHH
Q 017781 71 SMPIMIAPTAMQKMAHPEGEYATARAASAAGTIMTLSSWSTSSVEEV-------ASTGPGIRFFQLYVYKDRNVVAQLVR 143 (366)
Q Consensus 71 ~~Pi~iApm~~~~l~~~~~e~~la~aa~~~G~~~~vs~~~~~~~e~i-------~~~~~~~~~~Qly~~~d~~~~~~~l~ 143 (366)
..|++.|||.+.+ +..+++++.+.|....++.. ..+.+++ .+....+..+++..........+.++
T Consensus 2 ~~pi~~a~m~g~~------~~~~~~~~~~~G~ig~i~~~-~~~~~~~~~~~~~i~~~~~~~~~v~~i~~~~~~~~~~~~~ 74 (236)
T cd04730 2 RYPIIQAPMAGVS------TPELAAAVSNAGGLGFIGAG-YLTPEALRAEIRKIRALTDKPFGVNLLVPSSNPDFEALLE 74 (236)
T ss_pred CCCEECCCCCCCC------CHHHHHHHHhCCCccccCCC-CCCHHHHHHHHHHHHHhcCCCeEEeEecCCCCcCHHHHHH
Confidence 4799999997653 66899999999865555432 2223322 22222345577765331134567788
Q ss_pred HHHHcCCCEEEEecCCCCCcchhHHHhhhcCCCCccccccccccccCCCccccchhhHHHhhhccCCCCCHHHHHHHHHh
Q 017781 144 RAERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLTLKNFQGLDLGKMDEANDSGLAAYVAGQIDRSLSWKDVKWLQTI 223 (366)
Q Consensus 144 ra~~~G~~ai~vtvd~p~~g~r~~d~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~i~~lr~~ 223 (366)
.+.++|++.+.++-+ ...+.++++++
T Consensus 75 ~~~~~g~d~v~l~~~-----------------------------------------------------~~~~~~~~~~~- 100 (236)
T cd04730 75 VALEEGVPVVSFSFG-----------------------------------------------------PPAEVVERLKA- 100 (236)
T ss_pred HHHhCCCCEEEEcCC-----------------------------------------------------CCHHHHHHHHH-
Confidence 889999999876321 01223445554
Q ss_pred cCCCEEEEeccCHHH----HHcCCcEEEEcCCC--ccCCCCCcchHHHHHHHHHHcCCCceEEEecCCCCHHHHHHHHHh
Q 017781 224 TKLPILVKGVLTAED----VQAGAAGIIVSNHG--ARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALAL 297 (366)
Q Consensus 224 ~~~pv~vK~v~~~~d----~~aGad~I~vs~~g--g~~~~~~~~~~~~l~~i~~~~~~~i~vi~~GGI~~~~dv~kalal 297 (366)
.+++++++ +.+.++ .+.|+|+|.+.+.+ |.........++.+.++++.. ++||++.|||++++|+.+++.+
T Consensus 101 ~~i~~i~~-v~~~~~~~~~~~~gad~i~~~~~~~~G~~~~~~~~~~~~i~~i~~~~--~~Pvi~~GGI~~~~~v~~~l~~ 177 (236)
T cd04730 101 AGIKVIPT-VTSVEEARKAEAAGADALVAQGAEAGGHRGTFDIGTFALVPEVRDAV--DIPVIAAGGIADGRGIAAALAL 177 (236)
T ss_pred cCCEEEEe-CCCHHHHHHHHHcCCCEEEEeCcCCCCCCCccccCHHHHHHHHHHHh--CCCEEEECCCCCHHHHHHHHHc
Confidence 36777665 334444 77899999986542 222111134678888888777 7999999999999999999999
Q ss_pred CcCEEEecHHHHHHhhhcCHH
Q 017781 298 GASGIFIGRPVVYSLAAEGEK 318 (366)
Q Consensus 298 GAd~V~igr~~l~~l~~~G~~ 318 (366)
|||+|++|+.++....+.+..
T Consensus 178 GadgV~vgS~l~~~~e~~~~~ 198 (236)
T cd04730 178 GADGVQMGTRFLATEESGASP 198 (236)
T ss_pred CCcEEEEchhhhcCcccCCCH
Confidence 999999999999876554444
|
NDP is a member of the NAD(P)H-dependent flavin oxidoreductase family that reduce a range of alternative electron acceptors. Most use FAD/FMN as a cofactor and NAD(P)H as electron donor. Some contain 4Fe-4S cluster to transfer electron from FAD to FMN. |
| >COG2070 Dioxygenases related to 2-nitropropane dioxygenase [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.41 E-value=5.7e-12 Score=122.88 Aligned_cols=98 Identities=30% Similarity=0.440 Sum_probs=78.9
Q ss_pred CHHHHHHHHHhcCCCEEEEeccCHHH----HHcCCcEEEEcCC--CccCC--CCCcchHHHHHHHHHHcCCC-ceEEEec
Q 017781 213 SWKDVKWLQTITKLPILVKGVLTAED----VQAGAAGIIVSNH--GARQL--DYVPATIMALEEVVKATQGR-IPVFLDG 283 (366)
Q Consensus 213 ~~~~i~~lr~~~~~pv~vK~v~~~~d----~~aGad~I~vs~~--gg~~~--~~~~~~~~~l~~i~~~~~~~-i~vi~~G 283 (366)
.-+.++.+++ .+..++.+.+ +... .++|+|+|++.+. ||+.- +..++++.+++++++++ + +|||+.|
T Consensus 116 ~~~~i~~~~~-~g~~v~~~v~-~~~~A~~~~~~G~d~vI~~g~eAGGH~g~~~~~~~t~~Lv~ev~~~~--~~iPViAAG 191 (336)
T COG2070 116 PAEFVARLKA-AGIKVIHSVI-TVREALKAERAGADAVIAQGAEAGGHRGGVDLEVSTFALVPEVVDAV--DGIPVIAAG 191 (336)
T ss_pred cHHHHHHHHH-cCCeEEEEeC-CHHHHHHHHhCCCCEEEecCCcCCCcCCCCCCCccHHHHHHHHHHHh--cCCCEEEec
Confidence 3467888888 5777777655 3333 8999999998864 45432 34677889999999998 6 9999999
Q ss_pred CCCCHHHHHHHHHhCcCEEEecHHHHHHhhh
Q 017781 284 GVRRGTDVFKALALGASGIFIGRPVVYSLAA 314 (366)
Q Consensus 284 GI~~~~dv~kalalGAd~V~igr~~l~~l~~ 314 (366)
||.++.++..||++||++|++|+.|+..-.|
T Consensus 192 GI~dg~~i~AAlalGA~gVq~GT~Fl~t~Ea 222 (336)
T COG2070 192 GIADGRGIAAALALGADGVQMGTRFLATKEA 222 (336)
T ss_pred CccChHHHHHHHHhccHHHHhhhhhhccccc
Confidence 9999999999999999999999999875443
|
|
| >cd04742 NPD_FabD 2-Nitropropane dioxygenase (NPD)-like domain, associated with the (acyl-carrier-protein) S-malonyltransferase FabD | Back alignment and domain information |
|---|
Probab=99.34 E-value=9.1e-11 Score=116.68 Aligned_cols=214 Identities=18% Similarity=0.145 Sum_probs=127.7
Q ss_pred EcCcccCCceEecccc-cccccCChhhHHHHHHHHHcCCceecCCCCCCCHHHHh-------cc-C-CCceEEEeeec-C
Q 017781 65 VLGFKISMPIMIAPTA-MQKMAHPEGEYATARAASAAGTIMTLSSWSTSSVEEVA-------ST-G-PGIRFFQLYVY-K 133 (366)
Q Consensus 65 l~g~~l~~Pi~iApm~-~~~l~~~~~e~~la~aa~~~G~~~~vs~~~~~~~e~i~-------~~-~-~~~~~~Qly~~-~ 133 (366)
++|. ..|++.+||+ +.+ ..+|+.++.++|....++... .+.+++. +. . ..|+.++|+.. .
T Consensus 9 ~lgi--ryPii~gpMa~Gis------s~eLVaAvs~AGgLG~lgag~-l~~e~l~~~I~~ir~~lt~~~PfGVNL~~~~~ 79 (418)
T cd04742 9 DYGL--RYAYVAGAMARGIA------SAELVVAMGKAGMLGFFGAGG-LPLDEVEQAIERIQAALGNGEPYGVNLIHSPD 79 (418)
T ss_pred HhCC--CccEECCcccCCCC------CHHHHHHHHhCCCeeeecCCC-CCHHHHHHHHHHHHHhccCCCCeEEeeecCCC
Confidence 4444 5899999997 332 568999999999998888653 4455542 22 2 36889998753 3
Q ss_pred CHHHHHHHHHHHHHcCCCEEEEe--cCC-CCCcchhHHHhhhcCCC-Cc-cccccccccccCCCcc-ccchhhHHHhhhc
Q 017781 134 DRNVVAQLVRRAERAGFKAIALT--VDT-PRLGRREADIKNRFTLP-PF-LTLKNFQGLDLGKMDE-ANDSGLAAYVAGQ 207 (366)
Q Consensus 134 d~~~~~~~l~ra~~~G~~ai~vt--vd~-p~~g~r~~d~~~~~~~p-~~-~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~ 207 (366)
+++...+.++...+.|.+.+... .+. |.. .+.++ .|+... .+ +..++ ..+.+ .+.. ..+.
T Consensus 80 ~~~~e~~~v~l~le~gV~~ve~sa~~~~~p~~-~~~r~--~G~~~~~~g~~~~~~------~ViakVsr~e-vAs~---- 145 (418)
T cd04742 80 EPELEEGLVDLFLRHGVRVVEASAFMQLTPAL-VRYRA--KGLRRDADGRVQIAN------RIIAKVSRPE-VAEA---- 145 (418)
T ss_pred CchhHHHHHHHHHHcCCCEEEeccccCCCcch-hhHHh--cCCcccccccccccc------eEEEecCChh-hhhh----
Confidence 44555667888888898876543 111 111 11110 111000 00 00000 00000 0000 0111
Q ss_pred cCCCCCHHHHHHHHHhcCCCEEEEeccCHHH----HHcC-CcEEEEcC-CCccCCCCCcchHHHHHHHHH---Hc-----
Q 017781 208 IDRSLSWKDVKWLQTITKLPILVKGVLTAED----VQAG-AAGIIVSN-HGARQLDYVPATIMALEEVVK---AT----- 273 (366)
Q Consensus 208 ~d~~~~~~~i~~lr~~~~~pv~vK~v~~~~d----~~aG-ad~I~vs~-~gg~~~~~~~~~~~~l~~i~~---~~----- 273 (366)
.-.+..-+.++++++. ++ .|.++ .+.| +|.|++.. .||+. +..+++..++.+.+ .+
T Consensus 146 ~f~ppp~~~v~~L~~~-G~-------it~~eA~~A~~~g~aD~Ivvq~EAGGH~--g~~~~~~Llp~v~~l~d~v~~~~~ 215 (418)
T cd04742 146 FMSPAPERILKKLLAE-GK-------ITEEQAELARRVPVADDITVEADSGGHT--DNRPLSVLLPTIIRLRDELAARYG 215 (418)
T ss_pred hcCCCCHHHHHHHHHc-CC-------CCHHHHHHHHhCCCCCEEEEcccCCCCC--CCccHHhHHHHHHHHHHHHhhccc
Confidence 1122355678888875 32 27776 8999 59999874 24543 22345555555543 33
Q ss_pred -CCCceEEEecCCCCHHHHHHHHHhCcCEEEecHHHHHH
Q 017781 274 -QGRIPVFLDGGVRRGTDVFKALALGASGIFIGRPVVYS 311 (366)
Q Consensus 274 -~~~i~vi~~GGI~~~~dv~kalalGAd~V~igr~~l~~ 311 (366)
..++||++.|||.|+.+++.|+++|||+|++|+.|+-.
T Consensus 216 ~~~~ipViAAGGI~tg~~vaAA~alGAd~V~~GT~flat 254 (418)
T cd04742 216 YRRPIRVGAAGGIGTPEAAAAAFALGADFIVTGSINQCT 254 (418)
T ss_pred cCCCceEEEECCCCCHHHHHHHHHcCCcEEeeccHHHhC
Confidence 12599999999999999999999999999999999764
|
NPD is part of the nitroalkaneoxidizing enzyme family, that catalyzes oxidative denitrification of nitroalkanes to their corresponding carbonyl compounds and nitrites. NDPs are members of the NAD(P)H-dependent flavin oxidoreductase family that reduce a range of alternative electron acceptors. Most use FAD/FMN as a cofactor and NAD(P)H as electron donor. Some contain 4Fe-4S cluster to transfer electron from FAD to FMN. |
| >cd04743 NPD_PKS 2-Nitropropane dioxygenase (NPD)-like domain, associated with polyketide synthases (PKS) | Back alignment and domain information |
|---|
Probab=99.34 E-value=7e-11 Score=113.80 Aligned_cols=177 Identities=17% Similarity=0.212 Sum_probs=118.6
Q ss_pred CCceEecccccccccCChhh-HHHHHHHHHcCCceecCCCCCCCHHHH-------hcc-CCCceEEEeeecCCHHHHHHH
Q 017781 71 SMPIMIAPTAMQKMAHPEGE-YATARAASAAGTIMTLSSWSTSSVEEV-------AST-GPGIRFFQLYVYKDRNVVAQL 141 (366)
Q Consensus 71 ~~Pi~iApm~~~~l~~~~~e-~~la~aa~~~G~~~~vs~~~~~~~e~i-------~~~-~~~~~~~Qly~~~d~~~~~~~ 141 (366)
..||+.+||+..+ + ..|+.+.+++|...+++.. ..+.+++ ++. ...|+.++|-...+.....+.
T Consensus 2 ~yPIiqgpM~~vs------~~~~LaaAVS~AGgLG~la~~-~~~~e~l~~~i~~~~~l~tdkPfGVnl~~~~~~~~~~~~ 74 (320)
T cd04743 2 RYPIVQGPMTRVS------DVAEFAVAVAEGGGLPFIALA-LMRGEQVKALLEETAELLGDKPWGVGILGFVDTELRAAQ 74 (320)
T ss_pred CCCEECCCcCCCC------CcHHHHHHHHhCCccccCCCC-CCCHHHHHHHHHHHHHhccCCCeEEEEeccCCCcchHHH
Confidence 4899999998643 3 5799999999998887643 3344433 221 235777776432222333456
Q ss_pred HHHHHHcCCCEEEEecCCCCCcchhHHHhhhcCCCCccccccccccccCCCccccchhhHHHhhhccCCCCCHHHHHHHH
Q 017781 142 VRRAERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLTLKNFQGLDLGKMDEANDSGLAAYVAGQIDRSLSWKDVKWLQ 221 (366)
Q Consensus 142 l~ra~~~G~~ai~vtvd~p~~g~r~~d~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~i~~lr 221 (366)
++.+.+.+.+.+.++.. .| + .+++++
T Consensus 75 l~vi~e~~v~~V~~~~G--------------------------------------------------~P---~-~~~~lk 100 (320)
T cd04743 75 LAVVRAIKPTFALIAGG--------------------------------------------------RP---D-QARALE 100 (320)
T ss_pred HHHHHhcCCcEEEEcCC--------------------------------------------------Ch---H-HHHHHH
Confidence 66666666665543211 12 1 246666
Q ss_pred HhcCCCEEEEeccCHHH----HHcCCcEEEEcCC--CccCCCCCcchHHHHHHHHHHcC--------CCceEEEecCCCC
Q 017781 222 TITKLPILVKGVLTAED----VQAGAAGIIVSNH--GARQLDYVPATIMALEEVVKATQ--------GRIPVFLDGGVRR 287 (366)
Q Consensus 222 ~~~~~pv~vK~v~~~~d----~~aGad~I~vs~~--gg~~~~~~~~~~~~l~~i~~~~~--------~~i~vi~~GGI~~ 287 (366)
+. +++++.. +.++.. .++|+|+|++.++ ||+. +..+++..++++.+.+. .++|||+.|||.+
T Consensus 101 ~~-Gi~v~~~-v~s~~~A~~a~~~GaD~vVaqG~EAGGH~--G~~~t~~L~~~v~~~l~~~~~~~~~~~iPViAAGGI~d 176 (320)
T cd04743 101 AI-GISTYLH-VPSPGLLKQFLENGARKFIFEGRECGGHV--GPRSSFVLWESAIDALLAANGPDKAGKIHLLFAGGIHD 176 (320)
T ss_pred HC-CCEEEEE-eCCHHHHHHHHHcCCCEEEEecCcCcCCC--CCCCchhhHHHHHHHHHHhhcccccCCccEEEEcCCCC
Confidence 63 7666644 456555 9999999999885 5543 23445556666655441 2699999999999
Q ss_pred HHHHHHHHHhCc--------CEEEecHHHHHHh
Q 017781 288 GTDVFKALALGA--------SGIFIGRPVVYSL 312 (366)
Q Consensus 288 ~~dv~kalalGA--------d~V~igr~~l~~l 312 (366)
+..++.++++|| ++|++|+.|+..-
T Consensus 177 gr~~aaalaLGA~~~~~Ga~~GV~mGTrFl~t~ 209 (320)
T cd04743 177 ERSAAMVSALAAPLAERGAKVGVLMGTAYLFTE 209 (320)
T ss_pred HHHHHHHHHcCCcccccccccEEEEccHHhcch
Confidence 999999999999 8999999998753
|
NPD is part of the nitroalkaneoxidizing enzyme family, that catalyzes oxidative denitrification of nitroalkanes to their corresponding carbonyl compounds and nitrites. NDPs are members of the NAD(P)H-dependent flavin oxidoreductase family that reduce a range of alternative electron acceptors. Most use FAD/FMN as a cofactor and NAD(P)H as electron donor. Some contain 4Fe-4S cluster to transfer electron from FAD to FMN. |
| >PRK13523 NADPH dehydrogenase NamA; Provisional | Back alignment and domain information |
|---|
Probab=99.32 E-value=4.4e-11 Score=116.99 Aligned_cols=98 Identities=20% Similarity=0.198 Sum_probs=76.3
Q ss_pred CCCHHHHHHHHHhcCCCEEEEecc--------CHHH--------HHcCCcEEEEcCCCccC--CCCC-cchHHHHHHHHH
Q 017781 211 SLSWKDVKWLQTITKLPILVKGVL--------TAED--------VQAGAAGIIVSNHGARQ--LDYV-PATIMALEEVVK 271 (366)
Q Consensus 211 ~~~~~~i~~lr~~~~~pv~vK~v~--------~~~d--------~~aGad~I~vs~~gg~~--~~~~-~~~~~~l~~i~~ 271 (366)
.+..+.++.+|+.++.||.+|... +.++ .++|+|.|.||...-.. .... ...++...++++
T Consensus 193 Rf~~eii~~ir~~~~~~v~vRis~~d~~~~G~~~~e~~~i~~~l~~~gvD~i~vs~g~~~~~~~~~~~~~~~~~~~~ik~ 272 (337)
T PRK13523 193 RFLREIIDAVKEVWDGPLFVRISASDYHPGGLTVQDYVQYAKWMKEQGVDLIDVSSGAVVPARIDVYPGYQVPFAEHIRE 272 (337)
T ss_pred HHHHHHHHHHHHhcCCCeEEEecccccCCCCCCHHHHHHHHHHHHHcCCCEEEeCCCCCCCCCCCCCccccHHHHHHHHh
Confidence 456788999999998999999763 4554 77899999997643111 1111 114566677777
Q ss_pred HcCCCceEEEecCCCCHHHHHHHHHhC-cCEEEecHHHHH
Q 017781 272 ATQGRIPVFLDGGVRRGTDVFKALALG-ASGIFIGRPVVY 310 (366)
Q Consensus 272 ~~~~~i~vi~~GGI~~~~dv~kalalG-Ad~V~igr~~l~ 310 (366)
.+ ++||++.|+|++++++.++|+.| ||+|++||+++.
T Consensus 273 ~~--~ipVi~~G~i~~~~~a~~~l~~g~~D~V~~gR~~ia 310 (337)
T PRK13523 273 HA--NIATGAVGLITSGAQAEEILQNNRADLIFIGRELLR 310 (337)
T ss_pred hc--CCcEEEeCCCCCHHHHHHHHHcCCCChHHhhHHHHh
Confidence 77 79999999999999999999987 999999999985
|
|
| >cd04722 TIM_phosphate_binding TIM barrel proteins share a structurally conserved phosphate binding motif and in general share an eight beta/alpha closed barrel structure | Back alignment and domain information |
|---|
Probab=99.26 E-value=3.6e-10 Score=100.21 Aligned_cols=181 Identities=23% Similarity=0.246 Sum_probs=120.4
Q ss_pred eEecccccccccCChhhHHHHHHHHHcCCceec-CCCC-----C--CC---HHHHhccCCCceEEEeeecCCHHHHHHHH
Q 017781 74 IMIAPTAMQKMAHPEGEYATARAASAAGTIMTL-SSWS-----T--SS---VEEVASTGPGIRFFQLYVYKDRNVVAQLV 142 (366)
Q Consensus 74 i~iApm~~~~l~~~~~e~~la~aa~~~G~~~~v-s~~~-----~--~~---~e~i~~~~~~~~~~Qly~~~d~~~~~~~l 142 (366)
|++++|..+.. +...++++.+.+.|+.++. .+.. . .. ++.+......+.++|++.....+......
T Consensus 1 ~~~~~~~~~~~---~~~~~~~~~~~~~G~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a 77 (200)
T cd04722 1 VILALLAGGPS---GDPVELAKAAAEAGADAIIVGTRSSDPEEAETDDKEVLKEVAAETDLPLGVQLAINDAAAAVDIAA 77 (200)
T ss_pred CeeeccccCch---HHHHHHHHHHHcCCCCEEEEeeEEECcccCCCccccHHHHHHhhcCCcEEEEEccCCchhhhhHHH
Confidence 45677755321 3356899999998876653 2211 1 11 33344444467889998654444443335
Q ss_pred HHHHHcCCCEEEEecCCCCCcchhHHHhhhcCCCCccccccccccccCCCccccchhhHHHhhhccCCCCCHHHHHHHHH
Q 017781 143 RRAERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLTLKNFQGLDLGKMDEANDSGLAAYVAGQIDRSLSWKDVKWLQT 222 (366)
Q Consensus 143 ~ra~~~G~~ai~vtvd~p~~g~r~~d~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~i~~lr~ 222 (366)
++++++|++.+.++..++.. +....+.++++++
T Consensus 78 ~~~~~~g~d~v~l~~~~~~~-----------------------------------------------~~~~~~~~~~i~~ 110 (200)
T cd04722 78 AAARAAGADGVEIHGAVGYL-----------------------------------------------AREDLELIRELRE 110 (200)
T ss_pred HHHHHcCCCEEEEeccCCcH-----------------------------------------------HHHHHHHHHHHHH
Confidence 68889999999887665311 1224567888998
Q ss_pred hc-CCCEEEEeccCHH--H---HHcCCcEEEEcCCCccCCCCCcc--hHHHHHHHHHHcCCCceEEEecCCCCHHHHHHH
Q 017781 223 IT-KLPILVKGVLTAE--D---VQAGAAGIIVSNHGARQLDYVPA--TIMALEEVVKATQGRIPVFLDGGVRRGTDVFKA 294 (366)
Q Consensus 223 ~~-~~pv~vK~v~~~~--d---~~aGad~I~vs~~gg~~~~~~~~--~~~~l~~i~~~~~~~i~vi~~GGI~~~~dv~ka 294 (366)
.+ +.|+++|.....+ + .+.|+|.|.++++.+.+...... ....+..+++.. ++||+++|||.+++++.++
T Consensus 111 ~~~~~~v~~~~~~~~~~~~~~~~~~g~d~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~pi~~~GGi~~~~~~~~~ 188 (200)
T cd04722 111 AVPDVKVVVKLSPTGELAAAAAEEAGVDEVGLGNGGGGGGGRDAVPIADLLLILAKRGS--KVPVIAGGGINDPEDAAEA 188 (200)
T ss_pred hcCCceEEEEECCCCccchhhHHHcCCCEEEEcCCcCCCCCccCchhHHHHHHHHHhcC--CCCEEEECCCCCHHHHHHH
Confidence 87 7999999764322 1 67899999998865433222221 123344444433 7999999999999999999
Q ss_pred HHhCcCEEEecH
Q 017781 295 LALGASGIFIGR 306 (366)
Q Consensus 295 lalGAd~V~igr 306 (366)
+.+|||+|++||
T Consensus 189 ~~~Gad~v~vgs 200 (200)
T cd04722 189 LALGADGVIVGS 200 (200)
T ss_pred HHhCCCEEEecC
Confidence 999999999996
|
Specific for this family is the conserved phosphate binding site at the edges of strands 7 and 8. The phosphate comes either from the substrate, as in the case of inosine monophosphate dehydrogenase (IMPDH), or from ribulose-5-phosphate 3-epimerase (RPE) or from cofactors, like FMN. |
| >TIGR02814 pfaD_fam PfaD family protein | Back alignment and domain information |
|---|
Probab=99.20 E-value=1.8e-09 Score=108.15 Aligned_cols=213 Identities=19% Similarity=0.173 Sum_probs=124.7
Q ss_pred cCCceEecccccccccCChhhHHHHHHHHHcCCceecCCCCCCCHHHHhc-------cCC-Cc-eEEEeeecC-CHHHHH
Q 017781 70 ISMPIMIAPTAMQKMAHPEGEYATARAASAAGTIMTLSSWSTSSVEEVAS-------TGP-GI-RFFQLYVYK-DRNVVA 139 (366)
Q Consensus 70 l~~Pi~iApm~~~~l~~~~~e~~la~aa~~~G~~~~vs~~~~~~~e~i~~-------~~~-~~-~~~Qly~~~-d~~~~~ 139 (366)
+..|++.+||+.+ .. ..+|+.+..++|....++... .+++++.+ ..+ ++ +.++|+.+. +++.-.
T Consensus 17 iryPiiqgpMa~G-iS----s~eLVaAVs~AGgLG~lgag~-l~~e~l~~~I~~ir~~~~~~p~fGVNL~~~~~~~~~e~ 90 (444)
T TIGR02814 17 VRYAYVAGAMANG-IA----SAELVIAMGRAGILGFFGAGG-LPLEEVEQAIHRIQQALPGGPAYGVNLIHSPSDPALEW 90 (444)
T ss_pred CCCcEECccccCC-CC----CHHHHHHHHhCCceeeeCCCC-CCHHHHHHHHHHHHHhcCCCCceEEEecccCCCcccHH
Confidence 4589999999731 22 568999999999998888653 45555532 223 36 888987543 333344
Q ss_pred HHHHHHHHcCCCEEEEe--cC-CCCCcchhHHHhhhcCCCC--ccccccccccccCCCcc-ccchhhHHHhhhccCCCCC
Q 017781 140 QLVRRAERAGFKAIALT--VD-TPRLGRREADIKNRFTLPP--FLTLKNFQGLDLGKMDE-ANDSGLAAYVAGQIDRSLS 213 (366)
Q Consensus 140 ~~l~ra~~~G~~ai~vt--vd-~p~~g~r~~d~~~~~~~p~--~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~d~~~~ 213 (366)
++++.+.+.|.+.+... ++ +|.. .+.+ ..|+.... ++..++ ..+.+ .+.. .....+ .+..
T Consensus 91 ~~v~l~l~~~V~~veasa~~~~~p~~-v~~r--~~G~~~~~~g~~~~~~------~ViakVsr~~-vAs~f~----~p~p 156 (444)
T TIGR02814 91 GLVDLLLRHGVRIVEASAFMQLTPAL-VRYR--AKGLHRDADGRVVIRN------RLIAKVSRPE-VAEAFM----SPAP 156 (444)
T ss_pred HHHHHHHHcCCCEEEeccccCCCcch-hhhh--hccccccccccccccc------eEEEecCCHH-HHHHhc----CCCc
Confidence 56677778888876543 11 1211 0100 01110000 000000 00000 0000 011111 1223
Q ss_pred HHHHHHHHHhcCCCEEEEeccCHHH----HHcC-CcEEEEcC-CCccCCCCCcchHHHHHHHH---HHc------CCCce
Q 017781 214 WKDVKWLQTITKLPILVKGVLTAED----VQAG-AAGIIVSN-HGARQLDYVPATIMALEEVV---KAT------QGRIP 278 (366)
Q Consensus 214 ~~~i~~lr~~~~~pv~vK~v~~~~d----~~aG-ad~I~vs~-~gg~~~~~~~~~~~~l~~i~---~~~------~~~i~ 278 (366)
-+.|+.+++. + +.|.++ .+.| +|.|++.. .||+. +..+++..++.+. +.+ ..++|
T Consensus 157 ~~~v~~L~~~-G-------~it~eEA~~a~~~g~aD~Ivve~EAGGHt--g~~~~~~Llp~i~~lrd~v~~~~~y~~~Vp 226 (444)
T TIGR02814 157 AHILQKLLAE-G-------RITREEAELARRVPVADDICVEADSGGHT--DNRPLVVLLPAIIRLRDTLMRRYGYRKPIR 226 (444)
T ss_pred HHHHHHHHHc-C-------CCCHHHHHHHHhCCCCcEEEEeccCCCCC--CCCcHHHHHHHHHHHHHHHhhcccCCCCce
Confidence 4567777764 2 227777 8888 59998863 25543 2335666677664 333 12689
Q ss_pred EEEecCCCCHHHHHHHHHhCcCEEEecHHHHHHh
Q 017781 279 VFLDGGVRRGTDVFKALALGASGIFIGRPVVYSL 312 (366)
Q Consensus 279 vi~~GGI~~~~dv~kalalGAd~V~igr~~l~~l 312 (366)
|++.|||.|+.+++.|+++|||+|++|+.|+-+.
T Consensus 227 ViAAGGI~t~~~vaAAlaLGAdgV~~GT~flat~ 260 (444)
T TIGR02814 227 VGAAGGIGTPEAAAAAFMLGADFIVTGSVNQCTV 260 (444)
T ss_pred EEEeCCCCCHHHHHHHHHcCCcEEEeccHHHhCc
Confidence 9999999999999999999999999999998653
|
The protein PfaD is part of four gene locus, similar to polyketide biosynthesis systems, responsible for omega-3 polyunsaturated fatty acid biosynthesis in several high pressure and/or cold-adapted bacteria. Several other members of the seed alignment for this model are found in loci presumed to act in polyketide biosyntheses per se. |
| >cd04734 OYE_like_3_FMN Old yellow enzyme (OYE)-related FMN binding domain, group 3 | Back alignment and domain information |
|---|
Probab=99.17 E-value=1.3e-09 Score=107.08 Aligned_cols=98 Identities=18% Similarity=0.222 Sum_probs=71.5
Q ss_pred CCCHHHHHHHHHhcCCCEEEEecc----------CHHH--------HHcC-CcEEEEcCCCccCC----------CCCc-
Q 017781 211 SLSWKDVKWLQTITKLPILVKGVL----------TAED--------VQAG-AAGIIVSNHGARQL----------DYVP- 260 (366)
Q Consensus 211 ~~~~~~i~~lr~~~~~pv~vK~v~----------~~~d--------~~aG-ad~I~vs~~gg~~~----------~~~~- 260 (366)
.+..+.++.+|+.++.++.||..+ +.++ .++| +|+|.||...-... ....
T Consensus 192 r~~~eiv~~ir~~vg~~~~v~iRl~~~~~~~~G~~~~e~~~~~~~l~~~G~vd~i~vs~g~~~~~~~~~~~~~~~~~~~~ 271 (343)
T cd04734 192 RFLLEVLAAVRAAVGPDFIVGIRISGDEDTEGGLSPDEALEIAARLAAEGLIDYVNVSAGSYYTLLGLAHVVPSMGMPPG 271 (343)
T ss_pred HHHHHHHHHHHHHcCCCCeEEEEeehhhccCCCCCHHHHHHHHHHHHhcCCCCEEEeCCCCCCcccccccccCCCCCCcc
Confidence 456788999999986555444332 2343 6788 89999974321110 1111
Q ss_pred chHHHHHHHHHHcCCCceEEEecCCCCHHHHHHHHHhC-cCEEEecHHHHH
Q 017781 261 ATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALG-ASGIFIGRPVVY 310 (366)
Q Consensus 261 ~~~~~l~~i~~~~~~~i~vi~~GGI~~~~dv~kalalG-Ad~V~igr~~l~ 310 (366)
..++....+++.+ ++|||++|||++++++.++++.| ||+|++||+++.
T Consensus 272 ~~~~~~~~ik~~~--~ipvi~~G~i~~~~~~~~~l~~~~~D~V~~gR~~la 320 (343)
T cd04734 272 PFLPLAARIKQAV--DLPVFHAGRIRDPAEAEQALAAGHADMVGMTRAHIA 320 (343)
T ss_pred hhHHHHHHHHHHc--CCCEEeeCCCCCHHHHHHHHHcCCCCeeeecHHhHh
Confidence 1356777788877 79999999999999999999976 999999999985
|
Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Other members of OYE family include trimethylamine dehydrogenase, 2,4-dienoyl-CoA reductase, enoate reductase, pentaerythriol tetranitrate reductase, xenobiotic reductase, and morphinone reductase. One member of this subgroup, the Sinorhizobium meliloti stachydrine utilization protein stcD, has been idenified as a putative N-methylproline demethylase. |
| >KOG1799 consensus Dihydropyrimidine dehydrogenase [Nucleotide transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.15 E-value=1.5e-10 Score=109.87 Aligned_cols=253 Identities=16% Similarity=0.147 Sum_probs=169.6
Q ss_pred eccccCCCCCCccceeEcCcccCCceEecccccccccCChhhHHHHHHHHHcCCceecCCCCCCCHHHHhcc--------
Q 017781 49 RPRILIDVSKIDMNTTVLGFKISMPIMIAPTAMQKMAHPEGEYATARAASAAGTIMTLSSWSTSSVEEVAST-------- 120 (366)
Q Consensus 49 ~pr~l~~~~~vd~st~l~g~~l~~Pi~iApm~~~~l~~~~~e~~la~aa~~~G~~~~vs~~~~~~~e~i~~~-------- 120 (366)
.|..|.-++++|.+++..|+++++||.++.- .|.....+.+.|-..|.++.+.-.....-..|...
T Consensus 91 ~~k~~~~l~~ie~~vd~~G~k~~npf~~~s~------Pp~t~~~lm~raf~~gwg~l~~kt~~ld~~kV~nv~prvar~~ 164 (471)
T KOG1799|consen 91 GLKALLYLKSIEELVDWDGQKPANPFHQKSK------PPPTIAELMDRAFPSGWGYLEQKTKILDENKVRNVEPRVARSP 164 (471)
T ss_pred chhhhcchhhhhhhccccCccCCCccccCCC------CCCccHHHHHhhhhcccchhheeeeecchhhheecccceeecc
Confidence 3566667889999999999999999988652 24456789999999999987632111100001000
Q ss_pred ------CC-CceEEE--eee-----------------------------cCCHHHHHHHHHHHHHcCCCEEEEecCCCCC
Q 017781 121 ------GP-GIRFFQ--LYV-----------------------------YKDRNVVAQLVRRAERAGFKAIALTVDTPRL 162 (366)
Q Consensus 121 ------~~-~~~~~Q--ly~-----------------------------~~d~~~~~~~l~ra~~~G~~ai~vtvd~p~~ 162 (366)
.| .+.|.+ |.. -.+.....++.++.+++|.+.+-+++.||+.
T Consensus 165 t~~~~~~p~~~i~~nielIsdr~~e~~L~~f~eLk~~~p~~imIas~Mciynk~~w~el~d~~eqag~d~lE~nlscphg 244 (471)
T KOG1799|consen 165 TKRSCFIPKRPIPTNIELISDRKAEQYLGTFGELKNVEPVVIMIASEMCIYNKKCWMELNDSGEQAGQDDLETNLSCPHG 244 (471)
T ss_pred CCCCccccCCCccchhhhhccchHHHHHHHHHHhcccCCceeeehHHHHHhhhhhHHHHhhhHHhhcccchhccCCCCCC
Confidence 00 011100 000 0122224567778888888888888888863
Q ss_pred cchhHHHhhhcCCCC-ccccccccccccCCCccccchhhHHHhhhccCCCCCHHHHHHHHHhcCCCEEEEeccCHHH---
Q 017781 163 GRREADIKNRFTLPP-FLTLKNFQGLDLGKMDEANDSGLAAYVAGQIDRSLSWKDVKWLQTITKLPILVKGVLTAED--- 238 (366)
Q Consensus 163 g~r~~d~~~~~~~p~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~i~~lr~~~~~pv~vK~v~~~~d--- 238 (366)
++. ++.+. + ..+|...-+...|++....+|++-|...+..|
T Consensus 245 ------------m~ergmgla---------------------~--gq~p~v~~EvC~Wi~A~~~Ip~~~kmTPNitd~re 289 (471)
T KOG1799|consen 245 ------------MCERGMGLA---------------------L--GQCPIVDCEVCGWINAKATIPMVSKMTPNITDKRE 289 (471)
T ss_pred ------------Cccccccce---------------------e--ccChhhhHHHhhhhhhccccccccccCCCcccccc
Confidence 111 11110 0 12455667889999999999999999887766
Q ss_pred -----HHcCCcEEEEcCCC------------------ccCCCCC-------cchHHHHHHHHHHcCCCceEEEecCCCCH
Q 017781 239 -----VQAGAAGIIVSNHG------------------ARQLDYV-------PATIMALEEVVKATQGRIPVFLDGGVRRG 288 (366)
Q Consensus 239 -----~~aGad~I~vs~~g------------------g~~~~~~-------~~~~~~l~~i~~~~~~~i~vi~~GGI~~~ 288 (366)
.+.|+.+|...|.- |+.-.+| |..+..+..|++.+. ..|+.+.|||.++
T Consensus 290 var~~~~~g~~GiaA~NTi~SvM~i~~~~~~P~~~~~~~sT~GG~S~~AvRPIAl~~V~~IA~~m~-~F~l~~~GGvEt~ 368 (471)
T KOG1799|consen 290 VARSVNPVGCEGIAAINTIMSVMGIDMKTLRPEPCVEGYSTPGGYSYKAVRPIALAKVMNIAKMMK-EFSLSGIGGVETG 368 (471)
T ss_pred cchhcCcccccchhhHhHHHHHhcccccccCCCcccccccCCCCccccccchHHHHHHHHHHHHhh-cCccccccCcccc
Confidence 67778887755420 1111122 334555666777664 7899999999999
Q ss_pred HHHHHHHHhCcCEEEecHHHHHHhhhcCHHHHHHHHHHHHHHHHHHHHHcCCCChhhhcccce
Q 017781 289 TDVFKALALGASGIFIGRPVVYSLAAEGEKGVRRVLEMLREEFELAMALSGCRSLKEITRDHI 351 (366)
Q Consensus 289 ~dv~kalalGAd~V~igr~~l~~l~~~G~~gv~~~~~~l~~el~~~m~~~G~~~l~el~~~~l 351 (366)
.|.+..|.+|++.|++.+..+- .|.. .++.+-.||+.+|.+.|.+++++++++.|
T Consensus 369 ~~~~~Fil~Gs~~vQVCt~V~~----~~~~----~V~~~Ca~LK~~m~~~~~~ti~~~~G~SL 423 (471)
T KOG1799|consen 369 YDAAEFILLGSNTVQVCTGVMM----HGYG----HVKTLCAELKDFMKQHNFSTIEEFRGHSL 423 (471)
T ss_pred cchhhHhhcCCcHhhhhhHHHh----cCcc----hHHHHHHHHHHHHHHcCchhhhhccCcch
Confidence 9999999999999999998764 2443 34567789999999999999999998854
|
|
| >cd02932 OYE_YqiM_FMN Old yellow enzyme (OYE) YqjM-like FMN binding domain | Back alignment and domain information |
|---|
Probab=99.13 E-value=6.2e-09 Score=101.95 Aligned_cols=100 Identities=22% Similarity=0.231 Sum_probs=77.1
Q ss_pred CCCCHHHHHHHHHhc--CCCEEEEec--------cCHHH--------HHcCCcEEEEcCCCcc--CC-CCCc-chHHHHH
Q 017781 210 RSLSWKDVKWLQTIT--KLPILVKGV--------LTAED--------VQAGAAGIIVSNHGAR--QL-DYVP-ATIMALE 267 (366)
Q Consensus 210 ~~~~~~~i~~lr~~~--~~pv~vK~v--------~~~~d--------~~aGad~I~vs~~gg~--~~-~~~~-~~~~~l~ 267 (366)
..+..+.++.+|+.+ +.||.+|.. .+.++ .+.|+|+|.|+.++.. +. ...+ ..++.+.
T Consensus 204 ~rf~~eiv~aIR~~vG~d~~v~vri~~~~~~~~g~~~~e~~~ia~~Le~~gvd~iev~~g~~~~~~~~~~~~~~~~~~~~ 283 (336)
T cd02932 204 MRFLLEVVDAVRAVWPEDKPLFVRISATDWVEGGWDLEDSVELAKALKELGVDLIDVSSGGNSPAQKIPVGPGYQVPFAE 283 (336)
T ss_pred hHHHHHHHHHHHHHcCCCceEEEEEcccccCCCCCCHHHHHHHHHHHHHcCCCEEEECCCCCCcccccCCCccccHHHHH
Confidence 345678899999999 689999954 24444 6789999999864321 11 1111 1346677
Q ss_pred HHHHHcCCCceEEEecCCCCHHHHHHHHHhC-cCEEEecHHHHHH
Q 017781 268 EVVKATQGRIPVFLDGGVRRGTDVFKALALG-ASGIFIGRPVVYS 311 (366)
Q Consensus 268 ~i~~~~~~~i~vi~~GGI~~~~dv~kalalG-Ad~V~igr~~l~~ 311 (366)
++++.+ ++||+++|||.+++++.++|+.| ||+|++||+++..
T Consensus 284 ~ir~~~--~iPVi~~G~i~t~~~a~~~l~~g~aD~V~~gR~~i~d 326 (336)
T cd02932 284 RIRQEA--GIPVIAVGLITDPEQAEAILESGRADLVALGRELLRN 326 (336)
T ss_pred HHHhhC--CCCEEEeCCCCCHHHHHHHHHcCCCCeehhhHHHHhC
Confidence 788877 79999999999999999999998 9999999999863
|
YqjM is involved in the oxidative stress response of Bacillus subtilis. Like the other OYE members, each monomer of YqjM contains FMN as a non-covalently bound cofactor and uses NADPH as a reducing agent. The YqjM enzyme exists as a homotetramer that is assembled as a dimer of catalytically dependent dimers, while other OYE members exist only as monomers or dimers. Moreover, the protein displays a shared active site architecture where an arginine finger at the COOH terminus of one monomer extends into the active site of the adjacent monomer and is directly involved in substrate recognition. Another remarkable difference in the binding of the ligand in YqjM is represented by the contribution of the NH2-terminal tyrosine instead of a COOH-terminal tyrosine in OYE and its homologs. |
| >PRK01130 N-acetylmannosamine-6-phosphate 2-epimerase; Provisional | Back alignment and domain information |
|---|
Probab=99.07 E-value=8.5e-09 Score=95.00 Aligned_cols=169 Identities=21% Similarity=0.186 Sum_probs=107.9
Q ss_pred HHHHHHHHHcCCceecCCCCCCCHHHHhccCCCceEEEeeecCC-----H--HHHHHHHHHHHHcCCCEEEEecCCCCCc
Q 017781 91 YATARAASAAGTIMTLSSWSTSSVEEVASTGPGIRFFQLYVYKD-----R--NVVAQLVRRAERAGFKAIALTVDTPRLG 163 (366)
Q Consensus 91 ~~la~aa~~~G~~~~vs~~~~~~~e~i~~~~~~~~~~Qly~~~d-----~--~~~~~~l~ra~~~G~~ai~vtvd~p~~g 163 (366)
..+++++.+.|+..+.. .+...++++++....|....+| +| - ....+.++.+.++|++.+.+ |.+...
T Consensus 26 ~~~a~a~~~~G~~~~~~-~~~~~i~~i~~~~~~Pil~~~~--~d~~~~~~~~~~~~~~v~~a~~aGad~I~~--d~~~~~ 100 (221)
T PRK01130 26 AAMALAAVQGGAVGIRA-NGVEDIKAIRAVVDVPIIGIIK--RDYPDSEVYITPTLKEVDALAAAGADIIAL--DATLRP 100 (221)
T ss_pred HHHHHHHHHCCCeEEEc-CCHHHHHHHHHhCCCCEEEEEe--cCCCCCCceECCCHHHHHHHHHcCCCEEEE--eCCCCC
Confidence 68999999999875542 1112233444333344433333 11 0 00234578889999996654 433100
Q ss_pred chhHHHhhhcCCCCccccccccccccCCCccccchhhHHHhhhccCCCCCHHHHHHHHHhcCCCEEEEeccCHHH----H
Q 017781 164 RREADIKNRFTLPPFLTLKNFQGLDLGKMDEANDSGLAAYVAGQIDRSLSWKDVKWLQTITKLPILVKGVLTAED----V 239 (366)
Q Consensus 164 ~r~~d~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~i~~lr~~~~~pv~vK~v~~~~d----~ 239 (366)
.| +.....+.++++++..++|++ ..+.+.++ .
T Consensus 101 -----------~p--------------------------------~~~~~~~~i~~~~~~~~i~vi-~~v~t~ee~~~a~ 136 (221)
T PRK01130 101 -----------RP--------------------------------DGETLAELVKRIKEYPGQLLM-ADCSTLEEGLAAQ 136 (221)
T ss_pred -----------CC--------------------------------CCCCHHHHHHHHHhCCCCeEE-EeCCCHHHHHHHH
Confidence 00 001123456777764466655 45667776 8
Q ss_pred HcCCcEEEEcCCCccC--CCCCcchHHHHHHHHHHcCCCceEEEecCCCCHHHHHHHHHhCcCEEEecHHHHH
Q 017781 240 QAGAAGIIVSNHGARQ--LDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFIGRPVVY 310 (366)
Q Consensus 240 ~aGad~I~vs~~gg~~--~~~~~~~~~~l~~i~~~~~~~i~vi~~GGI~~~~dv~kalalGAd~V~igr~~l~ 310 (366)
++|+|+|.++++|-+. .......++.+.++++.+ ++||++.|||++++|+.+++++|||+|++|+.++.
T Consensus 137 ~~G~d~i~~~~~g~t~~~~~~~~~~~~~i~~i~~~~--~iPvia~GGI~t~~~~~~~l~~GadgV~iGsai~~ 207 (221)
T PRK01130 137 KLGFDFIGTTLSGYTEETKKPEEPDFALLKELLKAV--GCPVIAEGRINTPEQAKKALELGAHAVVVGGAITR 207 (221)
T ss_pred HcCCCEEEcCCceeecCCCCCCCcCHHHHHHHHHhC--CCCEEEECCCCCHHHHHHHHHCCCCEEEEchHhcC
Confidence 9999999876544221 122344578888898887 79999999999999999999999999999998754
|
|
| >cd02803 OYE_like_FMN_family Old yellow enzyme (OYE)-like FMN binding domain | Back alignment and domain information |
|---|
Probab=99.07 E-value=1.7e-09 Score=105.34 Aligned_cols=98 Identities=23% Similarity=0.234 Sum_probs=77.2
Q ss_pred CCCHHHHHHHHHhc--CCCEEEEecc--------CHHH--------HHcCCcEEEEcCCCccCCCC--------CcchHH
Q 017781 211 SLSWKDVKWLQTIT--KLPILVKGVL--------TAED--------VQAGAAGIIVSNHGARQLDY--------VPATIM 264 (366)
Q Consensus 211 ~~~~~~i~~lr~~~--~~pv~vK~v~--------~~~d--------~~aGad~I~vs~~gg~~~~~--------~~~~~~ 264 (366)
.+..+.++.+|+.+ +.||.+|... +.++ .++|+|+|.+++....+... ....++
T Consensus 192 r~~~eii~avr~~~g~d~~i~vris~~~~~~~g~~~~e~~~la~~l~~~G~d~i~vs~g~~~~~~~~~~~~~~~~~~~~~ 271 (327)
T cd02803 192 RFLLEIVAAVREAVGPDFPVGVRLSADDFVPGGLTLEEAIEIAKALEEAGVDALHVSGGSYESPPPIIPPPYVPEGYFLE 271 (327)
T ss_pred HHHHHHHHHHHHHcCCCceEEEEechhccCCCCCCHHHHHHHHHHHHHcCCCEEEeCCCCCcccccccCCCCCCcchhHH
Confidence 34678899999998 6899999763 3343 88999999998754322111 123456
Q ss_pred HHHHHHHHcCCCceEEEecCCCCHHHHHHHHHh-CcCEEEecHHHHH
Q 017781 265 ALEEVVKATQGRIPVFLDGGVRRGTDVFKALAL-GASGIFIGRPVVY 310 (366)
Q Consensus 265 ~l~~i~~~~~~~i~vi~~GGI~~~~dv~kalal-GAd~V~igr~~l~ 310 (366)
.+..+++.+ ++||+++|||++++++.++|+. |||+|++||+++.
T Consensus 272 ~~~~ir~~~--~iPVi~~Ggi~t~~~a~~~l~~g~aD~V~igR~~la 316 (327)
T cd02803 272 LAEKIKKAV--KIPVIAVGGIRDPEVAEEILAEGKADLVALGRALLA 316 (327)
T ss_pred HHHHHHHHC--CCCEEEeCCCCCHHHHHHHHHCCCCCeeeecHHHHh
Confidence 777788877 7999999999999999999998 7999999999985
|
OYE was the first flavin-dependent enzyme identified, however its true physiological role remains elusive to this day. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Members of OYE family include trimethylamine dehydrogenase, 2,4-dienoyl-CoA reductase, enoate reductase, pentaerythriol tetranitrate reductase, xenobiotic reductase, and morphinone reductase. |
| >cd04729 NanE N-acetylmannosamine-6-phosphate epimerase (NanE) converts N-acetylmannosamine-6-phosphate to N-acetylglucosamine-6-phosphate | Back alignment and domain information |
|---|
Probab=99.03 E-value=1.6e-08 Score=93.09 Aligned_cols=95 Identities=22% Similarity=0.270 Sum_probs=73.9
Q ss_pred CHHHHHHHHHhcCCCEEEEeccCHHH----HHcCCcEEEEcCCCccC--CCCCcchHHHHHHHHHHcCCCceEEEecCCC
Q 017781 213 SWKDVKWLQTITKLPILVKGVLTAED----VQAGAAGIIVSNHGARQ--LDYVPATIMALEEVVKATQGRIPVFLDGGVR 286 (366)
Q Consensus 213 ~~~~i~~lr~~~~~pv~vK~v~~~~d----~~aGad~I~vs~~gg~~--~~~~~~~~~~l~~i~~~~~~~i~vi~~GGI~ 286 (366)
..+.++++++..++|+++ .+.+.++ .++|+|+|.+.++|-+. .....+.++.+.++++.+ ++||++.|||+
T Consensus 111 ~~~~i~~~~~~g~~~iiv-~v~t~~ea~~a~~~G~d~i~~~~~g~t~~~~~~~~~~~~~l~~i~~~~--~ipvia~GGI~ 187 (219)
T cd04729 111 LAELIKRIHEEYNCLLMA-DISTLEEALNAAKLGFDIIGTTLSGYTEETAKTEDPDFELLKELRKAL--GIPVIAEGRIN 187 (219)
T ss_pred HHHHHHHHHHHhCCeEEE-ECCCHHHHHHHHHcCCCEEEccCccccccccCCCCCCHHHHHHHHHhc--CCCEEEeCCCC
Confidence 345677888765577766 4567766 89999999765554211 122335678899998877 79999999999
Q ss_pred CHHHHHHHHHhCcCEEEecHHHHH
Q 017781 287 RGTDVFKALALGASGIFIGRPVVY 310 (366)
Q Consensus 287 ~~~dv~kalalGAd~V~igr~~l~ 310 (366)
+++|+.+++++|||+|++|+.++.
T Consensus 188 ~~~~~~~~l~~GadgV~vGsal~~ 211 (219)
T cd04729 188 SPEQAAKALELGADAVVVGSAITR 211 (219)
T ss_pred CHHHHHHHHHCCCCEEEEchHHhC
Confidence 999999999999999999999864
|
This reaction is part of the pathway that allows the usage of sialic acid as a carbohydrate source. Sialic acids are a family of related sugars that are found as a component of glycoproteins, gangliosides, and other sialoglycoconjugates. |
| >PF04131 NanE: Putative N-acetylmannosamine-6-phosphate epimerase; InterPro: IPR007260 This family represents a putative ManNAc-6-P-to-GlcNAc-6P epimerase in the N-acetylmannosamine (ManNAc) utilization pathway found mainly in pathogenic bacteria for the reaction: |
Back alignment and domain information |
|---|
Probab=99.02 E-value=2.5e-08 Score=88.55 Aligned_cols=91 Identities=20% Similarity=0.284 Sum_probs=69.1
Q ss_pred HHHHHHHHHhcCCCEEEEeccCHHH----HHcCCcEEEEcCCCcc--CCCCCcchHHHHHHHHHHcCCCceEEEecCCCC
Q 017781 214 WKDVKWLQTITKLPILVKGVLTAED----VQAGAAGIIVSNHGAR--QLDYVPATIMALEEVVKATQGRIPVFLDGGVRR 287 (366)
Q Consensus 214 ~~~i~~lr~~~~~pv~vK~v~~~~d----~~aGad~I~vs~~gg~--~~~~~~~~~~~l~~i~~~~~~~i~vi~~GGI~~ 287 (366)
.+.++++|+.. -+++-.+.+.|| .++|+|.|--...|.+ ... ..|.++++.++++. .+|||+.|+|.+
T Consensus 82 ~~li~~i~~~~--~l~MADist~ee~~~A~~~G~D~I~TTLsGYT~~t~~-~~pD~~lv~~l~~~---~~pvIaEGri~t 155 (192)
T PF04131_consen 82 EELIREIKEKY--QLVMADISTLEEAINAAELGFDIIGTTLSGYTPYTKG-DGPDFELVRELVQA---DVPVIAEGRIHT 155 (192)
T ss_dssp HHHHHHHHHCT--SEEEEE-SSHHHHHHHHHTT-SEEE-TTTTSSTTSTT-SSHHHHHHHHHHHT---TSEEEEESS--S
T ss_pred HHHHHHHHHhC--cEEeeecCCHHHHHHHHHcCCCEEEcccccCCCCCCC-CCCCHHHHHHHHhC---CCcEeecCCCCC
Confidence 35699999987 678888999998 9999999975544443 223 56789999998864 699999999999
Q ss_pred HHHHHHHHHhCcCEEEecHHHHH
Q 017781 288 GTDVFKALALGASGIFIGRPVVY 310 (366)
Q Consensus 288 ~~dv~kalalGAd~V~igr~~l~ 310 (366)
++++.++|.+||++|.+|+++..
T Consensus 156 pe~a~~al~~GA~aVVVGsAITr 178 (192)
T PF04131_consen 156 PEQAAKALELGAHAVVVGSAITR 178 (192)
T ss_dssp HHHHHHHHHTT-SEEEE-HHHH-
T ss_pred HHHHHHHHhcCCeEEEECcccCC
Confidence 99999999999999999998754
|
; GO: 0047465 N-acylglucosamine-6-phosphate 2-epimerase activity, 0006051 N-acetylmannosamine metabolic process; PDB: 1Y0E_B 3IGS_A 1YXY_A 3Q58_B. |
| >KOG2333 consensus Uncharacterized conserved protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.01 E-value=4.6e-09 Score=103.74 Aligned_cols=203 Identities=16% Similarity=0.207 Sum_probs=141.6
Q ss_pred ccCCceEecccccccccCChhhHHHHHHHHHcCCceecCCCCCCCH-------H-HHhccCC--CceEEEeeecCCHHHH
Q 017781 69 KISMPIMIAPTAMQKMAHPEGEYATARAASAAGTIMTLSSWSTSSV-------E-EVASTGP--GIRFFQLYVYKDRNVV 138 (366)
Q Consensus 69 ~l~~Pi~iApm~~~~l~~~~~e~~la~aa~~~G~~~~vs~~~~~~~-------e-~i~~~~~--~~~~~Qly~~~d~~~~ 138 (366)
.+.--.++||++-. ||++++|.|+++|.-.+.|+|+.+.. | .+...++ ..+.+||-. ..++.+
T Consensus 262 D~r~K~~LaPLTTv------GNLPFRRlCk~lGADvTcgEMA~~tpLlqG~~sEWALlkRH~sEdiFGVQlag-~~pdt~ 334 (614)
T KOG2333|consen 262 DFRDKKYLAPLTTV------GNLPFRRLCKKLGADVTCGEMAMATPLLQGTASEWALLKRHQSEDIFGVQLAG-SKPDTA 334 (614)
T ss_pred ccccceeecccccc------CCccHHHHHHHhCCccchhHHHHHHHHhcccchhhhhhhhcCcccceeeEecc-CChHHH
Confidence 34467889998643 48899999999999999999865311 1 1112222 568889974 445555
Q ss_pred HHHHHHHH-HcCCCEEEEecCCCCCcchhHHHhhhcCCCCccccccccccccCCCccccchhhHHHhhhccCCCCCHHHH
Q 017781 139 AQLVRRAE-RAGFKAIALTVDTPRLGRREADIKNRFTLPPFLTLKNFQGLDLGKMDEANDSGLAAYVAGQIDRSLSWKDV 217 (366)
Q Consensus 139 ~~~l~ra~-~~G~~ai~vtvd~p~~g~r~~d~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~i 217 (366)
.+..+.+. ....+.|.|+++||.. +. .+ .+.+..++. .|..-...+
T Consensus 335 ~kaaq~i~e~~~VDFIDlN~GCPID------lv----------y~---------------qG~GsALl~--rp~rl~~~l 381 (614)
T KOG2333|consen 335 AKAAQVIAETCDVDFIDLNMGCPID------LV----------YR---------------QGGGSALLN--RPARLIRIL 381 (614)
T ss_pred HHHHHHHHhhcceeeeeccCCCChh------ee----------ec---------------cCCcchhhc--CcHHHHHHH
Confidence 55555443 4578999999999952 11 00 011122221 222233456
Q ss_pred HHHHHhcC-CCEEEEeccCHHH-------------HHcCCcEEEEcCCCccCCCCCcchHHHHHHHHHHcCCCceEEEec
Q 017781 218 KWLQTITK-LPILVKGVLTAED-------------VQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDG 283 (366)
Q Consensus 218 ~~lr~~~~-~pv~vK~v~~~~d-------------~~aGad~I~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~i~vi~~G 283 (366)
+......+ +||.||+.....+ .+.|+++|+++++...|-+.-.+.|+.+.++++.+...+|+|++|
T Consensus 382 ~~m~~vs~~iPiTVKiRTG~keg~~~a~~Li~~i~newg~savTlHGRSRqQRYTK~AnWdYi~e~a~~ak~~l~liGNG 461 (614)
T KOG2333|consen 382 RAMNAVSGDIPITVKIRTGTKEGHPVAHELIPRIVNEWGASAVTLHGRSRQQRYTKSANWDYIEECADKAKSALPLIGNG 461 (614)
T ss_pred HHHHHhccCCCeEEEEecccccCchhHHHHHHHHhhccCcceEEecCchhhhhhhcccChHHHHHHHHhcccCceeEecC
Confidence 66666564 6999998753321 489999999977665566667789999999999886569999999
Q ss_pred CCCCHHHHHHHHHhC--cCEEEecH-----HHHHH
Q 017781 284 GVRRGTDVFKALALG--ASGIFIGR-----PVVYS 311 (366)
Q Consensus 284 GI~~~~dv~kalalG--Ad~V~igr-----~~l~~ 311 (366)
.|-+-+|=.+-+..+ .+.||||| ||||.
T Consensus 462 Di~S~eDw~~~~~~~p~v~svMIaRGALIKPWIFt 496 (614)
T KOG2333|consen 462 DILSWEDWYERLNQNPNVDSVMIARGALIKPWIFT 496 (614)
T ss_pred ccccHHHHHHHhhcCCCcceEEeeccccccchHhh
Confidence 999999999988866 89999999 77764
|
|
| >cd04747 OYE_like_5_FMN Old yellow enzyme (OYE)-related FMN binding domain, group 5 | Back alignment and domain information |
|---|
Probab=99.00 E-value=1.8e-08 Score=99.41 Aligned_cols=98 Identities=18% Similarity=0.183 Sum_probs=72.8
Q ss_pred CCCHHHHHHHHHhc--CCCEEEEecc------------CHHH--------HHcCCcEEEEcCCCc-cCCCCCcchHHHHH
Q 017781 211 SLSWKDVKWLQTIT--KLPILVKGVL------------TAED--------VQAGAAGIIVSNHGA-RQLDYVPATIMALE 267 (366)
Q Consensus 211 ~~~~~~i~~lr~~~--~~pv~vK~v~------------~~~d--------~~aGad~I~vs~~gg-~~~~~~~~~~~~l~ 267 (366)
.+..+.|+.+|+.+ +.||.+|... +.++ .++|+|.|.++...- .+...+ ..+....
T Consensus 195 Rf~~eii~air~~vG~d~~v~vRis~~~~~~~~~~~g~~~~e~~~~~~~l~~~gvd~i~vs~g~~~~~~~~~-~~~~~~~ 273 (361)
T cd04747 195 RFAAEVVKAIRAAVGPDFPIILRFSQWKQQDYTARLADTPDELEALLAPLVDAGVDIFHCSTRRFWEPEFEG-SELNLAG 273 (361)
T ss_pred HHHHHHHHHHHHHcCCCCeEEEEECcccccccccCCCCCHHHHHHHHHHHHHcCCCEEEecCCCccCCCcCc-cchhHHH
Confidence 45678999999998 4799999752 3333 678999999876321 111111 2344556
Q ss_pred HHHHHcCCCceEEEecCC------------------CCHHHHHHHHHhC-cCEEEecHHHHHH
Q 017781 268 EVVKATQGRIPVFLDGGV------------------RRGTDVFKALALG-ASGIFIGRPVVYS 311 (366)
Q Consensus 268 ~i~~~~~~~i~vi~~GGI------------------~~~~dv~kalalG-Ad~V~igr~~l~~ 311 (366)
++++.+ ++||++.|+| ++++++.++|+-| ||+|++||++|..
T Consensus 274 ~~k~~~--~~pv~~~G~i~~~~~~~~~~~~~~~~~~~~~~~a~~~l~~g~~D~V~~gR~~iad 334 (361)
T cd04747 274 WTKKLT--GLPTITVGSVGLDGDFIGAFAGDEGASPASLDRLLERLERGEFDLVAVGRALLSD 334 (361)
T ss_pred HHHHHc--CCCEEEECCcccccccccccccccccccCCHHHHHHHHHCCCCCeehhhHHHHhC
Confidence 677766 7999999999 6999999999977 9999999999863
|
Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Other members of OYE family include trimethylamine dehydrogenase, 2,4-dienoyl-CoA reductase, enoate reductase, pentaerythriol tetranitrate reductase, xenobiotic reductase, and morphinone reductase. |
| >cd04735 OYE_like_4_FMN Old yellow enzyme (OYE)-related FMN binding domain, group 4 | Back alignment and domain information |
|---|
Probab=98.96 E-value=3.2e-09 Score=104.69 Aligned_cols=101 Identities=21% Similarity=0.224 Sum_probs=73.3
Q ss_pred CCCHHHHHHHHHhcC------CCEEEEecc--------CHHH--------HHcCCcEEEEcCCCccC--CCCCcchHHHH
Q 017781 211 SLSWKDVKWLQTITK------LPILVKGVL--------TAED--------VQAGAAGIIVSNHGARQ--LDYVPATIMAL 266 (366)
Q Consensus 211 ~~~~~~i~~lr~~~~------~pv~vK~v~--------~~~d--------~~aGad~I~vs~~gg~~--~~~~~~~~~~l 266 (366)
.+..+.++.+|+.++ .||.+|... +.++ .++|+|+|.||..+... ..........+
T Consensus 195 r~~~eii~~vr~~vg~~~~~~~~v~~R~s~~~~~~~g~~~ee~~~i~~~L~~~GvD~I~Vs~g~~~~~~~~~~~~~~~~~ 274 (353)
T cd04735 195 RFPLAVVKAVQEVIDKHADKDFILGYRFSPEEPEEPGIRMEDTLALVDKLADKGLDYLHISLWDFDRKSRRGRDDNQTIM 274 (353)
T ss_pred HHHHHHHHHHHHHhccccCCCceEEEEECcccccCCCCCHHHHHHHHHHHHHcCCCEEEeccCccccccccCCcchHHHH
Confidence 456788999999875 456665432 3344 78899999998743221 11112234455
Q ss_pred HHHHHHcCCCceEEEecCCCCHHHHHHHHHhCcCEEEecHHHHHH
Q 017781 267 EEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFIGRPVVYS 311 (366)
Q Consensus 267 ~~i~~~~~~~i~vi~~GGI~~~~dv~kalalGAd~V~igr~~l~~ 311 (366)
..+++.+..++|||+.|||++++++.++++.|||+|++||+++..
T Consensus 275 ~~ik~~~~~~iPVi~~Ggi~t~e~ae~~l~~gaD~V~~gR~liad 319 (353)
T cd04735 275 ELVKERIAGRLPLIAVGSINTPDDALEALETGADLVAIGRGLLVD 319 (353)
T ss_pred HHHHHHhCCCCCEEEECCCCCHHHHHHHHHcCCChHHHhHHHHhC
Confidence 566666544799999999999999999999999999999999863
|
Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Other members of OYE family include trimethylamine dehydrogenase, 2,4-dienoyl-CoA reductase, enoate reductase, pentaerythriol tetranitrate reductase, xenobiotic reductase, and morphinone reductase. |
| >cd02930 DCR_FMN 2,4-dienoyl-CoA reductase (DCR) FMN-binding domain | Back alignment and domain information |
|---|
Probab=98.95 E-value=2e-08 Score=98.99 Aligned_cols=99 Identities=21% Similarity=0.179 Sum_probs=72.4
Q ss_pred CCCHHHHHHHHHhcC--CCEEEEec--------cCHHH--------HHcCCcEEEEcC--CCccCCC----CCcc-hHHH
Q 017781 211 SLSWKDVKWLQTITK--LPILVKGV--------LTAED--------VQAGAAGIIVSN--HGARQLD----YVPA-TIMA 265 (366)
Q Consensus 211 ~~~~~~i~~lr~~~~--~pv~vK~v--------~~~~d--------~~aGad~I~vs~--~gg~~~~----~~~~-~~~~ 265 (366)
.+..+.++.+|+.++ .||.+|.. .+.++ .++|+|.|.||. |..+... .... ....
T Consensus 188 r~~~eiv~aIR~~vG~d~~v~iRi~~~D~~~~g~~~~e~~~i~~~Le~~G~d~i~vs~g~~e~~~~~~~~~~~~~~~~~~ 267 (353)
T cd02930 188 RFPVEIVRAVRAAVGEDFIIIYRLSMLDLVEGGSTWEEVVALAKALEAAGADILNTGIGWHEARVPTIATSVPRGAFAWA 267 (353)
T ss_pred HHHHHHHHHHHHHcCCCceEEEEecccccCCCCCCHHHHHHHHHHHHHcCCCEEEeCCCcCCCCCccccccCCchhhHHH
Confidence 456788999999985 46666654 24343 778999999975 2222111 1111 2345
Q ss_pred HHHHHHHcCCCceEEEecCCCCHHHHHHHHHhC-cCEEEecHHHHHH
Q 017781 266 LEEVVKATQGRIPVFLDGGVRRGTDVFKALALG-ASGIFIGRPVVYS 311 (366)
Q Consensus 266 l~~i~~~~~~~i~vi~~GGI~~~~dv~kalalG-Ad~V~igr~~l~~ 311 (366)
..++++.+ ++||+++|+|++..++.++++.| +|+|++||+++..
T Consensus 268 ~~~ik~~v--~iPVi~~G~i~~~~~a~~~i~~g~~D~V~~gR~~l~d 312 (353)
T cd02930 268 TAKLKRAV--DIPVIASNRINTPEVAERLLADGDADMVSMARPFLAD 312 (353)
T ss_pred HHHHHHhC--CCCEEEcCCCCCHHHHHHHHHCCCCChhHhhHHHHHC
Confidence 56777777 89999999999999999999987 9999999999853
|
DCR in E. coli is an iron-sulfur flavoenzyme which contains FMN, FAD, and a 4Fe-4S cluster. It is also a monomer, unlike that of its eukaryotic counterparts which form homotetramers and lack the flavin and iron-sulfur cofactors. Metabolism of unsaturated fatty acids requires auxiliary enzymes in addition to those used in b-oxidation. After a given number of cycles through the b-oxidation pathway, those unsaturated fatty acyl-CoAs with double bonds at even-numbered carbon positions contain 2-trans, 4-cis double bonds that can not be modified by enoyl-CoA hydratase. DCR utilizes NADPH to remove the C4-C5 double bond. DCR can catalyze the reduction of both natural fatty acids with cis double bonds, as well as substrates containing trans double bonds. The reaction is initiated by hybrid transfer from NADPH to FAD, which in turn transfers electrons, one at a time, to FMN via the 4Fe-4S cluster. The fully reduced FMN provi |
| >cd04733 OYE_like_2_FMN Old yellow enzyme (OYE)-related FMN binding domain, group 2 | Back alignment and domain information |
|---|
Probab=98.89 E-value=1.9e-08 Score=98.63 Aligned_cols=99 Identities=24% Similarity=0.316 Sum_probs=75.9
Q ss_pred CCCCHHHHHHHHHhc--CCCEEEEec--------cCHHH--------HHcCCcEEEEcCCCccCCCCC---------cc-
Q 017781 210 RSLSWKDVKWLQTIT--KLPILVKGV--------LTAED--------VQAGAAGIIVSNHGARQLDYV---------PA- 261 (366)
Q Consensus 210 ~~~~~~~i~~lr~~~--~~pv~vK~v--------~~~~d--------~~aGad~I~vs~~gg~~~~~~---------~~- 261 (366)
..+..+.|+.+|+.+ +.||.+|.. .+.++ .++|+|.|.||...-.+.... +.
T Consensus 199 ~rf~~EiI~aIR~avG~d~~v~vris~~~~~~~g~~~eea~~ia~~Le~~Gvd~iev~~g~~~~~~~~~~~~~~~~~~~~ 278 (338)
T cd04733 199 ARLLLEIYDAIRAAVGPGFPVGIKLNSADFQRGGFTEEDALEVVEALEEAGVDLVELSGGTYESPAMAGAKKESTIAREA 278 (338)
T ss_pred HHHHHHHHHHHHHHcCCCCeEEEEEcHHHcCCCCCCHHHHHHHHHHHHHcCCCEEEecCCCCCCccccccccCCccccch
Confidence 346778999999998 479999975 35554 788999999976422111110 01
Q ss_pred -hHHHHHHHHHHcCCCceEEEecCCCCHHHHHHHHHhC-cCEEEecHHHHH
Q 017781 262 -TIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALG-ASGIFIGRPVVY 310 (366)
Q Consensus 262 -~~~~l~~i~~~~~~~i~vi~~GGI~~~~dv~kalalG-Ad~V~igr~~l~ 310 (366)
.++...++++.+ ++||+++|+|.+.+++.++|+.| ||+|++||+++.
T Consensus 279 ~~~~~~~~ik~~v--~iPVi~~G~i~t~~~a~~~l~~g~aD~V~lgR~~ia 327 (338)
T cd04733 279 YFLEFAEKIRKVT--KTPLMVTGGFRTRAAMEQALASGAVDGIGLARPLAL 327 (338)
T ss_pred hhHHHHHHHHHHc--CCCEEEeCCCCCHHHHHHHHHcCCCCeeeeChHhhh
Confidence 145666788877 79999999999999999999987 999999999975
|
Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Other members of OYE family include trimethylamine dehydrogenase, 2,4-dienoyl-CoA reductase, enoate reductase, pentaerythriol tetranitrate reductase, xenobiotic reductase, and morphinone reductase. |
| >cd02933 OYE_like_FMN Old yellow enzyme (OYE)-like FMN binding domain | Back alignment and domain information |
|---|
Probab=98.88 E-value=3e-08 Score=97.15 Aligned_cols=96 Identities=18% Similarity=0.104 Sum_probs=74.6
Q ss_pred CCCHHHHHHHHHhcCC-CEEEEecc-----------CHHH--------HHcCCcEEEEcCCCccCCCCCcchHHHHHHHH
Q 017781 211 SLSWKDVKWLQTITKL-PILVKGVL-----------TAED--------VQAGAAGIIVSNHGARQLDYVPATIMALEEVV 270 (366)
Q Consensus 211 ~~~~~~i~~lr~~~~~-pv~vK~v~-----------~~~d--------~~aGad~I~vs~~gg~~~~~~~~~~~~l~~i~ 270 (366)
.+..+.++.+|+.++. ||.+|... +.++ .++|+|.|.||... .........++...+++
T Consensus 203 rf~~eii~air~~vg~d~v~vRis~~~~~~~~~~~~~~ee~~~~~~~l~~~g~d~i~vs~g~-~~~~~~~~~~~~~~~ik 281 (338)
T cd02933 203 RFLLEVVDAVAEAIGADRVGIRLSPFGTFNDMGDSDPEATFSYLAKELNKRGLAYLHLVEPR-VAGNPEDQPPDFLDFLR 281 (338)
T ss_pred hHHHHHHHHHHHHhCCCceEEEECccccCCCCCCCCCHHHHHHHHHHHHHcCCcEEEEecCC-CCCcccccchHHHHHHH
Confidence 4567889999999854 89999742 3344 77899999996532 11111334567778888
Q ss_pred HHcCCCceEEEecCCCCHHHHHHHHHhC-cCEEEecHHHHH
Q 017781 271 KATQGRIPVFLDGGVRRGTDVFKALALG-ASGIFIGRPVVY 310 (366)
Q Consensus 271 ~~~~~~i~vi~~GGI~~~~dv~kalalG-Ad~V~igr~~l~ 310 (366)
+.+ ++|||++|||+ ++++.++|+.| ||+|++||+++.
T Consensus 282 ~~~--~ipvi~~G~i~-~~~a~~~l~~g~~D~V~~gR~~la 319 (338)
T cd02933 282 KAF--KGPLIAAGGYD-AESAEAALADGKADLVAFGRPFIA 319 (338)
T ss_pred HHc--CCCEEEECCCC-HHHHHHHHHcCCCCEEEeCHhhhh
Confidence 888 79999999997 99999999987 999999999975
|
OYE was the first flavin-dependent enzyme identified, however its true physiological role remains elusive to this day. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Members of OYE family include 12-oxophytodienoate reductase, pentaerythritol tetranitrate reductase, morphinone reductase, and related enzymes. |
| >cd02931 ER_like_FMN Enoate reductase (ER)-like FMN-binding domain | Back alignment and domain information |
|---|
Probab=98.86 E-value=3.3e-08 Score=98.43 Aligned_cols=100 Identities=16% Similarity=0.234 Sum_probs=75.1
Q ss_pred CCCCHHHHHHHHHhc--CCCEEEEecc----------------------CHHH--------HHcCCcEEEEcCCCccCCC
Q 017781 210 RSLSWKDVKWLQTIT--KLPILVKGVL----------------------TAED--------VQAGAAGIIVSNHGARQLD 257 (366)
Q Consensus 210 ~~~~~~~i~~lr~~~--~~pv~vK~v~----------------------~~~d--------~~aGad~I~vs~~gg~~~~ 257 (366)
..+..+.++.+|+.+ +.||.+|... +.++ .++|+|.|.||.....+..
T Consensus 201 ~rf~~eii~~vr~~~g~~f~v~vri~~~~~~~~~~~~~~~~~~~~~~g~~~e~~~~~~~~l~~~gvD~l~vs~g~~~~~~ 280 (382)
T cd02931 201 LRFAIEIVEEIKARCGEDFPVSLRYSVKSYIKDLRQGALPGEEFQEKGRDLEEGLKAAKILEEAGYDALDVDAGSYDAWY 280 (382)
T ss_pred hHHHHHHHHHHHHhcCCCceEEEEEechhhccccccccccccccccCCCCHHHHHHHHHHHHHhCCCEEEeCCCCCcccc
Confidence 346778999999998 5699999752 3344 6789999999753311111
Q ss_pred C-------Ccch-HHHHHHHHHHcCCCceEEEecCCCCHHHHHHHHHhC-cCEEEecHHHHHH
Q 017781 258 Y-------VPAT-IMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALG-ASGIFIGRPVVYS 311 (366)
Q Consensus 258 ~-------~~~~-~~~l~~i~~~~~~~i~vi~~GGI~~~~dv~kalalG-Ad~V~igr~~l~~ 311 (366)
. .... +.....+++.+ ++||+++|||++++++.++|+.| ||+|++||+++..
T Consensus 281 ~~~~~~~~~~~~~~~~~~~ik~~~--~~pvi~~G~i~~~~~~~~~l~~g~~D~V~~gR~~lad 341 (382)
T cd02931 281 WNHPPMYQKKGMYLPYCKALKEVV--DVPVIMAGRMEDPELASEAINEGIADMISLGRPLLAD 341 (382)
T ss_pred cccCCccCCcchhHHHHHHHHHHC--CCCEEEeCCCCCHHHHHHHHHcCCCCeeeechHhHhC
Confidence 1 1111 34566777777 79999999999999999999987 9999999999863
|
Enoate reductase catalyzes the NADH-dependent reduction of carbon-carbon double bonds of several molecules, including nonactivated 2-enoates, alpha,beta-unsaturated aldehydes, cyclic ketones, and methylketones. ERs are similar to 2,4-dienoyl-CoA reductase from E. coli and to the old yellow enzyme from Saccharomyces cerevisiae. |
| >PRK04180 pyridoxal biosynthesis lyase PdxS; Provisional | Back alignment and domain information |
|---|
Probab=98.73 E-value=8.2e-08 Score=90.46 Aligned_cols=93 Identities=26% Similarity=0.391 Sum_probs=70.5
Q ss_pred HHHHHHHHhcCCCEEEEeccCHHH----HHcCCcEEEEcCCCccC------------------C-----C-------CCc
Q 017781 215 KDVKWLQTITKLPILVKGVLTAED----VQAGAAGIIVSNHGARQ------------------L-----D-------YVP 260 (366)
Q Consensus 215 ~~i~~lr~~~~~pv~vK~v~~~~d----~~aGad~I~vs~~gg~~------------------~-----~-------~~~ 260 (366)
+.+..+|..++.| ++-++.+.++ .+.|+|.|--.+.-|+. + + ...
T Consensus 111 ~~~~~~K~~f~~~-fmad~~~l~EAlrai~~GadmI~Ttge~gtg~v~~av~h~r~~~~~i~~L~gyt~~~~~~~a~~~~ 189 (293)
T PRK04180 111 EEYHIDKWDFTVP-FVCGARNLGEALRRIAEGAAMIRTKGEAGTGNVVEAVRHMRQINGEIRRLTSMSEDELYTAAKELQ 189 (293)
T ss_pred HHHHHHHHHcCCC-EEccCCCHHHHHHHHHCCCCeeeccCCCCCccHHHHHHHHHHHHHHHHHHhCCCHHHHHhhccccC
Confidence 5577777777766 4456667776 88899988765432321 0 0 023
Q ss_pred chHHHHHHHHHHcCCCceEE--EecCCCCHHHHHHHHHhCcCEEEecHHHHH
Q 017781 261 ATIMALEEVVKATQGRIPVF--LDGGVRRGTDVFKALALGASGIFIGRPVVY 310 (366)
Q Consensus 261 ~~~~~l~~i~~~~~~~i~vi--~~GGI~~~~dv~kalalGAd~V~igr~~l~ 310 (366)
+.++.|.++++.. ++||+ +.|||.|++|+.+++.+|||+|++|+.++.
T Consensus 190 ~~~elL~ei~~~~--~iPVV~~AeGGI~TPedaa~vme~GAdgVaVGSaI~k 239 (293)
T PRK04180 190 APYELVKEVAELG--RLPVVNFAAGGIATPADAALMMQLGADGVFVGSGIFK 239 (293)
T ss_pred CCHHHHHHHHHhC--CCCEEEEEeCCCCCHHHHHHHHHhCCCEEEEcHHhhc
Confidence 4678888888876 79998 999999999999999999999999999864
|
|
| >TIGR00262 trpA tryptophan synthase, alpha subunit | Back alignment and domain information |
|---|
Probab=98.73 E-value=1.1e-06 Score=82.82 Aligned_cols=50 Identities=20% Similarity=0.363 Sum_probs=42.8
Q ss_pred hHHHHHHHHHHcCCCceEEEecCCCCHHHHHHHHHhCcCEEEecHHHHHHhh
Q 017781 262 TIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFIGRPVVYSLA 313 (366)
Q Consensus 262 ~~~~l~~i~~~~~~~i~vi~~GGI~~~~dv~kalalGAd~V~igr~~l~~l~ 313 (366)
..+.+.++++.. +.||+++|||++++++.+++..|||+|.+|++++.-+.
T Consensus 186 ~~~~i~~lr~~~--~~pi~vgfGI~~~e~~~~~~~~GADgvVvGSaiv~~~~ 235 (256)
T TIGR00262 186 LNELVKRLKAYS--AKPVLVGFGISKPEQVKQAIDAGADGVIVGSAIVKIIE 235 (256)
T ss_pred HHHHHHHHHhhc--CCCEEEeCCCCCHHHHHHHHHcCCCEEEECHHHHHHHH
Confidence 456677777665 67999999999999999999999999999999977553
|
Tryptophan synthase catalyzes the last step in the biosynthesis of tryptophan. The alpha chain is responsible for the aldol cleavage of indoleglycerol phosphate to indole and glyceraldehyde 3-phosphate. In bacteria and plants each domain is found on a separate subunit (alpha and beta chains), while in fungi the two domains are fused together on a single multifunctional protein. The signature pattern for trpA contains three conserved acidic residues. [LIVM]-E-[LIVM]-G-x(2)-[FYC]-[ST]-[DE]-[PA]-[LIVMY]-[AGLI]-[DE]-G and this is located between residues 43-58 of the model. The Sulfolobus solfataricus trpA is known to be quite divergent from other known trpA sequences. |
| >PRK10605 N-ethylmaleimide reductase; Provisional | Back alignment and domain information |
|---|
Probab=98.71 E-value=2.7e-06 Score=84.25 Aligned_cols=94 Identities=14% Similarity=-0.029 Sum_probs=67.8
Q ss_pred CCHHHHHHHHHhcC-CCEEEEec-----------cCHHH---------HHcCCcEEEEcCCCccCCCCCcc-hHHHHHHH
Q 017781 212 LSWKDVKWLQTITK-LPILVKGV-----------LTAED---------VQAGAAGIIVSNHGARQLDYVPA-TIMALEEV 269 (366)
Q Consensus 212 ~~~~~i~~lr~~~~-~pv~vK~v-----------~~~~d---------~~aGad~I~vs~~gg~~~~~~~~-~~~~l~~i 269 (366)
+..+.|+.+|+.++ -+|.+|.. .+.+| .+.|+|+|.||.... ....+ ......++
T Consensus 211 f~~Eiv~aVr~~vg~~~igvRis~~~~~~~~~~G~~~~e~~~~~~~~L~~~giD~i~vs~~~~---~~~~~~~~~~~~~i 287 (362)
T PRK10605 211 LVLEVVDAGIAEWGADRIGIRISPLGTFNNVDNGPNEEADALYLIEQLGKRGIAYLHMSEPDW---AGGEPYSDAFREKV 287 (362)
T ss_pred HHHHHHHHHHHHcCCCeEEEEECCccccccCCCCCCHHHHHHHHHHHHHHcCCCEEEeccccc---cCCccccHHHHHHH
Confidence 46688999999984 25888753 23222 668999999986211 11111 22334566
Q ss_pred HHHcCCCceEEEecCCCCHHHHHHHHHhC-cCEEEecHHHHHH
Q 017781 270 VKATQGRIPVFLDGGVRRGTDVFKALALG-ASGIFIGRPVVYS 311 (366)
Q Consensus 270 ~~~~~~~i~vi~~GGI~~~~dv~kalalG-Ad~V~igr~~l~~ 311 (366)
++.+ ++||++.|++ +++.+.++|+.| ||+|++||+++..
T Consensus 288 k~~~--~~pv~~~G~~-~~~~ae~~i~~G~~D~V~~gR~~iad 327 (362)
T PRK10605 288 RARF--HGVIIGAGAY-TAEKAETLIGKGLIDAVAFGRDYIAN 327 (362)
T ss_pred HHHC--CCCEEEeCCC-CHHHHHHHHHcCCCCEEEECHHhhhC
Confidence 6667 6899999986 899999999998 9999999999863
|
|
| >COG1902 NemA NADH:flavin oxidoreductases, Old Yellow Enzyme family [Energy production and conversion] | Back alignment and domain information |
|---|
Probab=98.68 E-value=7.2e-07 Score=87.98 Aligned_cols=98 Identities=28% Similarity=0.356 Sum_probs=71.8
Q ss_pred CCHHHHHHHHHhcC--CCEEEEecc---------CHHH--------HHcC-CcEEEEcCCCcc---CCCCC-cc-hHHHH
Q 017781 212 LSWKDVKWLQTITK--LPILVKGVL---------TAED--------VQAG-AAGIIVSNHGAR---QLDYV-PA-TIMAL 266 (366)
Q Consensus 212 ~~~~~i~~lr~~~~--~pv~vK~v~---------~~~d--------~~aG-ad~I~vs~~gg~---~~~~~-~~-~~~~l 266 (366)
+..+.++.+|+.++ .||.++... +.++ .+.| +|.|.++..+.. ..... +. .....
T Consensus 201 f~~EVv~aVr~~vg~~~~vg~Rls~~d~~~~~g~~~~e~~~la~~L~~~G~~d~i~vs~~~~~~~~~~~~~~~~~~~~~a 280 (363)
T COG1902 201 FLLEVVDAVREAVGADFPVGVRLSPDDFFDGGGLTIEEAVELAKALEEAGLVDYIHVSEGGYERGGTITVSGPGYQVEFA 280 (363)
T ss_pred HHHHHHHHHHHHhCCCceEEEEECccccCCCCCCCHHHHHHHHHHHHhcCCccEEEeecccccCCCCccccccchhHHHH
Confidence 35578999999995 589999653 2333 7899 799999874321 11111 11 12334
Q ss_pred HHHHHHcCCCceEEEecCCCCHHHHHHHHHhC-cCEEEecHHHHHH
Q 017781 267 EEVVKATQGRIPVFLDGGVRRGTDVFKALALG-ASGIFIGRPVVYS 311 (366)
Q Consensus 267 ~~i~~~~~~~i~vi~~GGI~~~~dv~kalalG-Ad~V~igr~~l~~ 311 (366)
..++..+ .+|||++|+|++++.+.++|+-| ||+|.+|||||..
T Consensus 281 ~~i~~~~--~~pvi~~G~i~~~~~Ae~~l~~g~aDlVa~gR~~lad 324 (363)
T COG1902 281 ARIKKAV--RIPVIAVGGINDPEQAEEILASGRADLVAMGRPFLAD 324 (363)
T ss_pred HHHHHhc--CCCEEEeCCCCCHHHHHHHHHcCCCCEEEechhhhcC
Confidence 4566655 69999999999999999999998 9999999999863
|
|
| >cd02929 TMADH_HD_FMN Trimethylamine dehydrogenase (TMADH) and histamine dehydrogenase (HD) FMN-binding domain | Back alignment and domain information |
|---|
Probab=98.64 E-value=3.9e-07 Score=90.41 Aligned_cols=98 Identities=11% Similarity=0.038 Sum_probs=70.0
Q ss_pred CCCHHHHHHHHHhcC--CCEEEEecc----------CHHH-------HHcCCcEEEEcCCCc----cCCCCCc--chHHH
Q 017781 211 SLSWKDVKWLQTITK--LPILVKGVL----------TAED-------VQAGAAGIIVSNHGA----RQLDYVP--ATIMA 265 (366)
Q Consensus 211 ~~~~~~i~~lr~~~~--~pv~vK~v~----------~~~d-------~~aGad~I~vs~~gg----~~~~~~~--~~~~~ 265 (366)
.+..+.++.+|+.++ .||.+|... +.++ .+..+|.+.+|...- ......+ ..++.
T Consensus 201 Rf~~eii~aIr~~vg~~~~v~vRls~~~~~~~~g~~~~~e~~~~~~~l~~~~D~i~vs~g~~~~~~~~~~~~~~~~~~~~ 280 (370)
T cd02929 201 RFWRETLEDTKDAVGDDCAVATRFSVDELIGPGGIESEGEGVEFVEMLDELPDLWDVNVGDWANDGEDSRFYPEGHQEPY 280 (370)
T ss_pred HHHHHHHHHHHHHcCCCceEEEEecHHHhcCCCCCCCHHHHHHHHHHHHhhCCEEEecCCCccccccccccCCccccHHH
Confidence 457789999999985 566666431 2333 444589998875211 0000001 12456
Q ss_pred HHHHHHHcCCCceEEEecCCCCHHHHHHHHHhC-cCEEEecHHHHH
Q 017781 266 LEEVVKATQGRIPVFLDGGVRRGTDVFKALALG-ASGIFIGRPVVY 310 (366)
Q Consensus 266 l~~i~~~~~~~i~vi~~GGI~~~~dv~kalalG-Ad~V~igr~~l~ 310 (366)
..++++.+ ++|||+.|||++++++.++|+.| ||+|++||++|.
T Consensus 281 ~~~ik~~~--~~pvi~~G~i~~~~~~~~~l~~g~~D~V~~gR~~la 324 (370)
T cd02929 281 IKFVKQVT--SKPVVGVGRFTSPDKMVEVVKSGILDLIGAARPSIA 324 (370)
T ss_pred HHHHHHHC--CCCEEEeCCCCCHHHHHHHHHcCCCCeeeechHhhh
Confidence 67777777 79999999999999999999987 999999999985
|
TMADH is an iron-sulfur flavoprotein that catalyzes the oxidative demethylation of trimethylamine to form dimethylamine and formaldehyde. The protein forms a symetrical dimer with each subunit containing one 4Fe-4S cluster and one FMN cofactor. It contains a unique flavin, in the form of a 6-S-cysteinyl FMN which is bent by ~25 degrees along the N5-N10 axis of the flavin isoalloxazine ring. This modification of the conformation of the flavin is thought to facilitate catalysis.The closely related histamine dehydrogenase catalyzes oxidative deamination of histamine. |
| >PRK08255 salicylyl-CoA 5-hydroxylase; Reviewed | Back alignment and domain information |
|---|
Probab=98.64 E-value=2.6e-07 Score=99.84 Aligned_cols=99 Identities=19% Similarity=0.198 Sum_probs=73.4
Q ss_pred CCCHHHHHHHHHhc--CCCEEEEecc--------CHHH--------HHcCCcEEEEcCCCc-c-C-CCCCcc-hHHHHHH
Q 017781 211 SLSWKDVKWLQTIT--KLPILVKGVL--------TAED--------VQAGAAGIIVSNHGA-R-Q-LDYVPA-TIMALEE 268 (366)
Q Consensus 211 ~~~~~~i~~lr~~~--~~pv~vK~v~--------~~~d--------~~aGad~I~vs~~gg-~-~-~~~~~~-~~~~l~~ 268 (366)
.+..+.++.+|+.+ +.||.+|... +.++ .++|+|.|.||..+- . + ...++. ......+
T Consensus 602 r~~~eiv~~ir~~~~~~~~v~~ri~~~~~~~~g~~~~~~~~~~~~l~~~g~d~i~vs~g~~~~~~~~~~~~~~~~~~~~~ 681 (765)
T PRK08255 602 RYPLEVFRAVRAVWPAEKPMSVRISAHDWVEGGNTPDDAVEIARAFKAAGADLIDVSSGQVSKDEKPVYGRMYQTPFADR 681 (765)
T ss_pred HHHHHHHHHHHHhcCCCCeeEEEEccccccCCCCCHHHHHHHHHHHHhcCCcEEEeCCCCCCcCCCCCcCccccHHHHHH
Confidence 35678899999987 4799999763 2344 788999999985221 1 1 011111 2334466
Q ss_pred HHHHcCCCceEEEecCCCCHHHHHHHHHhC-cCEEEecHHHHHH
Q 017781 269 VVKATQGRIPVFLDGGVRRGTDVFKALALG-ASGIFIGRPVVYS 311 (366)
Q Consensus 269 i~~~~~~~i~vi~~GGI~~~~dv~kalalG-Ad~V~igr~~l~~ 311 (366)
+++.+ ++||++.|+|++++++.++|+.| ||+|++||++|..
T Consensus 682 ik~~~--~~pv~~~G~i~~~~~a~~~l~~g~~D~v~~gR~~l~d 723 (765)
T PRK08255 682 IRNEA--GIATIAVGAISEADHVNSIIAAGRADLCALARPHLAD 723 (765)
T ss_pred HHHHc--CCEEEEeCCCCCHHHHHHHHHcCCcceeeEcHHHHhC
Confidence 77777 79999999999999999999976 9999999999863
|
|
| >PRK00278 trpC indole-3-glycerol-phosphate synthase; Reviewed | Back alignment and domain information |
|---|
Probab=98.62 E-value=6.7e-07 Score=84.55 Aligned_cols=77 Identities=18% Similarity=0.274 Sum_probs=56.8
Q ss_pred eccCHHH----HHcCCcEEEEcCCCccCCCCCcchHHHHHHHHHHcCCCceEEEecCCCCHHHHHHHHHhCcCEEEecHH
Q 017781 232 GVLTAED----VQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFIGRP 307 (366)
Q Consensus 232 ~v~~~~d----~~aGad~I~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~i~vi~~GGI~~~~dv~kalalGAd~V~igr~ 307 (366)
.+.+.++ .++|+|.|-++|. .+..-.+.++...++.+.+++..++|+.|||.+++|+.+++.+|||+|.+|+.
T Consensus 166 evh~~~E~~~A~~~gadiIgin~r---dl~~~~~d~~~~~~l~~~~p~~~~vIaegGI~t~ed~~~~~~~Gad~vlVGsa 242 (260)
T PRK00278 166 EVHDEEELERALKLGAPLIGINNR---NLKTFEVDLETTERLAPLIPSDRLVVSESGIFTPEDLKRLAKAGADAVLVGES 242 (260)
T ss_pred EeCCHHHHHHHHHcCCCEEEECCC---CcccccCCHHHHHHHHHhCCCCCEEEEEeCCCCHHHHHHHHHcCCCEEEECHH
Confidence 3445554 6778887766432 22222334666677777665567999999999999999999999999999999
Q ss_pred HHHH
Q 017781 308 VVYS 311 (366)
Q Consensus 308 ~l~~ 311 (366)
++.+
T Consensus 243 I~~~ 246 (260)
T PRK00278 243 LMRA 246 (260)
T ss_pred HcCC
Confidence 8753
|
|
| >COG3010 NanE Putative N-acetylmannosamine-6-phosphate epimerase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.59 E-value=4.2e-06 Score=74.90 Aligned_cols=82 Identities=15% Similarity=0.156 Sum_probs=65.8
Q ss_pred CCCEEEEeccCHHH----HHcCCcEEEE--cCCCccCCCCCcchHHHHHHHHHHcCCCceEEEecCCCCHHHHHHHHHhC
Q 017781 225 KLPILVKGVLTAED----VQAGAAGIIV--SNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALG 298 (366)
Q Consensus 225 ~~pv~vK~v~~~~d----~~aGad~I~v--s~~gg~~~~~~~~~~~~l~~i~~~~~~~i~vi~~GGI~~~~dv~kalalG 298 (366)
..-+++..+.+.|| .++|+|.|-- |++.+....-..+.+++++++.+ . .++||+.|.+.|++++.+++.+|
T Consensus 126 ~~~l~MAD~St~ee~l~a~~~G~D~IGTTLsGYT~~~~~~~~pDf~lvk~l~~-~--~~~vIAEGr~~tP~~Ak~a~~~G 202 (229)
T COG3010 126 PGQLAMADCSTFEEGLNAHKLGFDIIGTTLSGYTGYTEKPTEPDFQLVKQLSD-A--GCRVIAEGRYNTPEQAKKAIEIG 202 (229)
T ss_pred CCcEEEeccCCHHHHHHHHHcCCcEEecccccccCCCCCCCCCcHHHHHHHHh-C--CCeEEeeCCCCCHHHHHHHHHhC
Confidence 45688888899998 9999999863 33333222234468888888877 3 79999999999999999999999
Q ss_pred cCEEEecHHHH
Q 017781 299 ASGIFIGRPVV 309 (366)
Q Consensus 299 Ad~V~igr~~l 309 (366)
|++|.+|+++-
T Consensus 203 a~aVvVGsAIT 213 (229)
T COG3010 203 ADAVVVGSAIT 213 (229)
T ss_pred CeEEEECcccC
Confidence 99999998764
|
|
| >PRK13125 trpA tryptophan synthase subunit alpha; Provisional | Back alignment and domain information |
|---|
Probab=98.53 E-value=8.6e-06 Score=76.31 Aligned_cols=50 Identities=20% Similarity=0.280 Sum_probs=41.5
Q ss_pred hHHHHHHHHHHcCCCceEEEecCCCCHHHHHHHHHhCcCEEEecHHHHHHh
Q 017781 262 TIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFIGRPVVYSL 312 (366)
Q Consensus 262 ~~~~l~~i~~~~~~~i~vi~~GGI~~~~dv~kalalGAd~V~igr~~l~~l 312 (366)
..+.+.++++... +.||+++|||++++++.+++..|||++.+|+.++.-+
T Consensus 172 ~~~~i~~lr~~~~-~~~i~v~gGI~~~e~i~~~~~~gaD~vvvGSai~~~~ 221 (244)
T PRK13125 172 VERNIKRVRNLVG-NKYLVVGFGLDSPEDARDALSAGADGVVVGTAFIEEL 221 (244)
T ss_pred HHHHHHHHHHhcC-CCCEEEeCCcCCHHHHHHHHHcCCCEEEECHHHHHHH
Confidence 3456777776653 4789999999999999999999999999999987644
|
|
| >CHL00200 trpA tryptophan synthase alpha subunit; Provisional | Back alignment and domain information |
|---|
Probab=98.52 E-value=1.2e-05 Score=76.00 Aligned_cols=48 Identities=25% Similarity=0.364 Sum_probs=39.9
Q ss_pred HHHHHHHHHcCCCceEEEecCCCCHHHHHHHHHhCcCEEEecHHHHHHhh
Q 017781 264 MALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFIGRPVVYSLA 313 (366)
Q Consensus 264 ~~l~~i~~~~~~~i~vi~~GGI~~~~dv~kalalGAd~V~igr~~l~~l~ 313 (366)
+.+..+++.. +.||.+.+||++++++.+....|||+|.+|++++.-+.
T Consensus 192 ~~i~~ir~~t--~~Pi~vGFGI~~~e~~~~~~~~GADGvVVGSalv~~i~ 239 (263)
T CHL00200 192 KLIETIKKMT--NKPIILGFGISTSEQIKQIKGWNINGIVIGSACVQILL 239 (263)
T ss_pred HHHHHHHHhc--CCCEEEECCcCCHHHHHHHHhcCCCEEEECHHHHHHHH
Confidence 3445555544 79999999999999999999999999999999986543
|
|
| >cd00331 IGPS Indole-3-glycerol phosphate synthase (IGPS); an enzyme in the tryptophan biosynthetic pathway, catalyzing the ring closure reaction of 1-(o-carboxyphenylamino)-1-deoxyribulose-5-phosphate (CdRP) to indole-3-glycerol phosphate (IGP), accompanied by the release of carbon dioxide and water | Back alignment and domain information |
|---|
Probab=98.52 E-value=6.5e-06 Score=75.55 Aligned_cols=75 Identities=17% Similarity=0.286 Sum_probs=58.3
Q ss_pred cCHHH----HHcCCcEEEEcCCCccCCCCCcchHHHHHHHHHHcCCCceEEEecCCCCHHHHHHHHHhCcCEEEecHHHH
Q 017781 234 LTAED----VQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFIGRPVV 309 (366)
Q Consensus 234 ~~~~d----~~aGad~I~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~i~vi~~GGI~~~~dv~kalalGAd~V~igr~~l 309 (366)
.++++ .+.|+|.+.+++..+.. ..+.++.+.++++.++.++|+++.|||.+++|+.+++.+|||+|.+|++++
T Consensus 129 ~~~~e~~~~~~~g~~~i~~t~~~~~~---~~~~~~~~~~l~~~~~~~~pvia~gGI~s~edi~~~~~~Ga~gvivGsai~ 205 (217)
T cd00331 129 HDEEELERALALGAKIIGINNRDLKT---FEVDLNTTERLAPLIPKDVILVSESGISTPEDVKRLAEAGADAVLIGESLM 205 (217)
T ss_pred CCHHHHHHHHHcCCCEEEEeCCCccc---cCcCHHHHHHHHHhCCCCCEEEEEcCCCCHHHHHHHHHcCCCEEEECHHHc
Confidence 45554 77899999876433322 234457778887775447899999999999999999999999999999987
Q ss_pred HH
Q 017781 310 YS 311 (366)
Q Consensus 310 ~~ 311 (366)
..
T Consensus 206 ~~ 207 (217)
T cd00331 206 RA 207 (217)
T ss_pred CC
Confidence 53
|
IGPS is active as a separate monomer in most organisms, but is also found fused to other enzymes as part of a bifunctional or multifunctional enzyme involved in tryptophan biosynthesis. |
| >cd04727 pdxS PdxS is a subunit of the pyridoxal 5'-phosphate (PLP) synthase, an important enzyme in deoxyxylulose 5-phosphate (DXP)-independent pathway for de novo biosynthesis of PLP, present in some eubacteria, in archaea, fungi, plants, plasmodia, and some metazoa | Back alignment and domain information |
|---|
Probab=98.47 E-value=2e-06 Score=80.91 Aligned_cols=94 Identities=26% Similarity=0.353 Sum_probs=75.7
Q ss_pred HHHHHHHHHhcCCCEEEEeccCHHH----HHcCCcEEEEcCCCccCC-----------------------------C-CC
Q 017781 214 WKDVKWLQTITKLPILVKGVLTAED----VQAGAAGIIVSNHGARQL-----------------------------D-YV 259 (366)
Q Consensus 214 ~~~i~~lr~~~~~pv~vK~v~~~~d----~~aGad~I~vs~~gg~~~-----------------------------~-~~ 259 (366)
.+.+..+|..++.| ++-++.+.++ .+.|+|.|--...|++.. . ..
T Consensus 101 ~~~~~~iK~~~~~l-~MAD~stleEal~a~~~Gad~I~TTl~gyT~~~~~~~~~~~~i~~~i~~~~gyt~~t~~~~~~~~ 179 (283)
T cd04727 101 DEEHHIDKHKFKVP-FVCGARNLGEALRRISEGAAMIRTKGEAGTGNVVEAVRHMRAVNGEIRKLQSMSEEELYAVAKEI 179 (283)
T ss_pred HHHHHHHHHHcCCc-EEccCCCHHHHHHHHHCCCCEEEecCCCCCCcHHHHHHHHHHHHHHHHHHhCCCHHHHHhhhccc
Confidence 45688888888665 6677888888 999999998766555431 0 12
Q ss_pred cchHHHHHHHHHHcCCCceEE--EecCCCCHHHHHHHHHhCcCEEEecHHHHH
Q 017781 260 PATIMALEEVVKATQGRIPVF--LDGGVRRGTDVFKALALGASGIFIGRPVVY 310 (366)
Q Consensus 260 ~~~~~~l~~i~~~~~~~i~vi--~~GGI~~~~dv~kalalGAd~V~igr~~l~ 310 (366)
.+.++.|.++.+.+ ++||+ +.|||.+++++.+++.+||++|++|+.++.
T Consensus 180 ~~d~elLk~l~~~~--~iPVV~iAeGGI~Tpena~~v~e~GAdgVaVGSAI~~ 230 (283)
T cd04727 180 QAPYELVKETAKLG--RLPVVNFAAGGVATPADAALMMQLGADGVFVGSGIFK 230 (283)
T ss_pred CCCHHHHHHHHHhc--CCCeEEEEeCCCCCHHHHHHHHHcCCCEEEEcHHhhc
Confidence 35778899998877 79997 999999999999999999999999999864
|
Together with PdxT, PdxS forms the PLP synthase, a heteromeric glutamine amidotransferase (GATase), whereby PdxT produces ammonia from glutamine and PdxS combines ammonia with five- and three-carbon phosphosugars to form PLP. PLP is the biologically active form of vitamin B6, an essential cofactor in many biochemical processes. PdxS subunits form two hexameric rings. |
| >PRK06552 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional | Back alignment and domain information |
|---|
Probab=98.44 E-value=1.3e-05 Score=73.52 Aligned_cols=170 Identities=15% Similarity=0.169 Sum_probs=110.4
Q ss_pred eEEEeeecCCHHHHHHHHHHHHHcCCCEEEEecCCCCCcchhHHHhhhcCC-CCccccccccccccCCCccccchhhHHH
Q 017781 125 RFFQLYVYKDRNVVAQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFTL-PPFLTLKNFQGLDLGKMDEANDSGLAAY 203 (366)
Q Consensus 125 ~~~Qly~~~d~~~~~~~l~ra~~~G~~ai~vtvd~p~~g~r~~d~~~~~~~-p~~~~~~~~~~~~~~~~~~~~~~~~~~~ 203 (366)
..+-+....+.+....+++.+.+.|++.+-||+++|..-.-.+.++..+.- | ++.+. ..........+........+
T Consensus 14 ~vi~vir~~~~~~a~~~~~al~~~Gi~~iEit~~~~~a~~~i~~l~~~~~~~p-~~~vG-aGTV~~~~~~~~a~~aGA~F 91 (213)
T PRK06552 14 GVVAVVRGESKEEALKISLAVIKGGIKAIEVTYTNPFASEVIKELVELYKDDP-EVLIG-AGTVLDAVTARLAILAGAQF 91 (213)
T ss_pred CEEEEEECCCHHHHHHHHHHHHHCCCCEEEEECCCccHHHHHHHHHHHcCCCC-CeEEe-eeeCCCHHHHHHHHHcCCCE
Confidence 345566677889999999999999999999999998765556666655521 1 11110 00000000000000111122
Q ss_pred hhhccCCCCCHHHHHHHHHhcCCCEEEEeccCHHH----HHcCCcEEEEcCCCccCCCCCcchHHHHHHHHHHcCCCceE
Q 017781 204 VAGQIDRSLSWKDVKWLQTITKLPILVKGVLTAED----VQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPV 279 (366)
Q Consensus 204 ~~~~~d~~~~~~~i~~lr~~~~~pv~vK~v~~~~d----~~aGad~I~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~i~v 279 (366)
+. .|.++-+.+++.++ .++|++ =|+.|+.+ .++|+|.|.+.-.. ..| .+.++.++..++ ++|+
T Consensus 92 iv---sP~~~~~v~~~~~~-~~i~~i-PG~~T~~E~~~A~~~Gad~vklFPa~----~~G---~~~ik~l~~~~p-~ip~ 158 (213)
T PRK06552 92 IV---SPSFNRETAKICNL-YQIPYL-PGCMTVTEIVTALEAGSEIVKLFPGS----TLG---PSFIKAIKGPLP-QVNV 158 (213)
T ss_pred EE---CCCCCHHHHHHHHH-cCCCEE-CCcCCHHHHHHHHHcCCCEEEECCcc----cCC---HHHHHHHhhhCC-CCEE
Confidence 22 35566677777665 477754 47788887 88999999984311 112 344555555553 6999
Q ss_pred EEecCCCCHHHHHHHHHhCcCEEEecHHHHH
Q 017781 280 FLDGGVRRGTDVFKALALGASGIFIGRPVVY 310 (366)
Q Consensus 280 i~~GGI~~~~dv~kalalGAd~V~igr~~l~ 310 (366)
++.|||. .+++...+++||++|.+|+.++.
T Consensus 159 ~atGGI~-~~N~~~~l~aGa~~vavgs~l~~ 188 (213)
T PRK06552 159 MVTGGVN-LDNVKDWFAAGADAVGIGGELNK 188 (213)
T ss_pred EEECCCC-HHHHHHHHHCCCcEEEEchHHhC
Confidence 9999996 79999999999999999999854
|
|
| >PRK00507 deoxyribose-phosphate aldolase; Provisional | Back alignment and domain information |
|---|
Probab=98.40 E-value=5.5e-06 Score=76.42 Aligned_cols=89 Identities=21% Similarity=0.191 Sum_probs=68.3
Q ss_pred HHHHHHHHHhcCCCEEEEec-----cCHHH--------HHcCCcEEEEcCCCccCCCCCcchHHHHHHHHHHcCCCceEE
Q 017781 214 WKDVKWLQTITKLPILVKGV-----LTAED--------VQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVF 280 (366)
Q Consensus 214 ~~~i~~lr~~~~~pv~vK~v-----~~~~d--------~~aGad~I~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~i~vi 280 (366)
.+.++.+++.. .|+.+|.+ ++.++ .++|+|+|..|...+ .+..+.+.+..+++.++++++|.
T Consensus 109 ~~ei~~v~~~~-~~~~lKvIlEt~~L~~e~i~~a~~~~~~agadfIKTsTG~~----~~gat~~~v~~m~~~~~~~~~IK 183 (221)
T PRK00507 109 EADIRAVVEAA-GGAVLKVIIETCLLTDEEKVKACEIAKEAGADFVKTSTGFS----TGGATVEDVKLMRETVGPRVGVK 183 (221)
T ss_pred HHHHHHHHHhc-CCceEEEEeecCcCCHHHHHHHHHHHHHhCCCEEEcCCCCC----CCCCCHHHHHHHHHHhCCCceEE
Confidence 34677777755 47899985 34443 899999887665321 23367777777778887789999
Q ss_pred EecCCCCHHHHHHHHHhCcCEEEecHH
Q 017781 281 LDGGVRRGTDVFKALALGASGIFIGRP 307 (366)
Q Consensus 281 ~~GGI~~~~dv~kalalGAd~V~igr~ 307 (366)
++|||++.+|+.+.+.+||+.++..+.
T Consensus 184 asGGIrt~~~a~~~i~aGA~riGtS~~ 210 (221)
T PRK00507 184 ASGGIRTLEDALAMIEAGATRLGTSAG 210 (221)
T ss_pred eeCCcCCHHHHHHHHHcCcceEccCcH
Confidence 999999999999999999999977653
|
|
| >cd04724 Tryptophan_synthase_alpha Ttryptophan synthase (TRPS) alpha subunit (TSA) | Back alignment and domain information |
|---|
Probab=98.40 E-value=2.6e-05 Score=72.96 Aligned_cols=49 Identities=16% Similarity=0.297 Sum_probs=40.8
Q ss_pred hHHHHHHHHHHcCCCceEEEecCCCCHHHHHHHHHhCcCEEEecHHHHHHhh
Q 017781 262 TIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFIGRPVVYSLA 313 (366)
Q Consensus 262 ~~~~l~~i~~~~~~~i~vi~~GGI~~~~dv~kalalGAd~V~igr~~l~~l~ 313 (366)
..+.+.++++.. ++||+++|||++.+++.++... ||+|.+|+.++.-+.
T Consensus 175 ~~~~i~~lr~~~--~~pI~vggGI~~~e~~~~~~~~-ADgvVvGSaiv~~~~ 223 (242)
T cd04724 175 LKELIKRIRKYT--DLPIAVGFGISTPEQAAEVAKY-ADGVIVGSALVKIIE 223 (242)
T ss_pred HHHHHHHHHhcC--CCcEEEEccCCCHHHHHHHHcc-CCEEEECHHHHHHHH
Confidence 345566666654 7999999999999999999999 999999999876553
|
TPRS is a bifunctional tetrameric enzyme (2 alpha and 2 beta subunits) that catalyzes the last two steps of L-tryptophan biosynthesis. Alpha and beta subunit catalyze two distinct reactions which are both strongly stimulated by the formation of the complex. The alpha subunit catalyzes the cleavage of indole 3-glycerol phosphate (IGP) to indole and d-glyceraldehyde 3-phosphate (G3P). Indole is then channeled to the active site of the beta subunit, a PLP-dependent enzyme that catalyzes a replacement reaction to convert L-serine into L-tryptophan. |
| >PRK09140 2-dehydro-3-deoxy-6-phosphogalactonate aldolase; Reviewed | Back alignment and domain information |
|---|
Probab=98.39 E-value=4.7e-05 Score=69.58 Aligned_cols=169 Identities=15% Similarity=0.180 Sum_probs=106.0
Q ss_pred EEEeeecCCHHHHHHHHHHHHHcCCCEEEEecCCCCCcchhHHHhhhcCCCCccccccccccccCCCccccchhhHHHhh
Q 017781 126 FFQLYVYKDRNVVAQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLTLKNFQGLDLGKMDEANDSGLAAYVA 205 (366)
Q Consensus 126 ~~Qly~~~d~~~~~~~l~ra~~~G~~ai~vtvd~p~~g~r~~d~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 205 (366)
.+-+....+.+...+.++.+.+.|++.+-+|.+.|..-...+.++..+..+.-+...++-. ....+........++.
T Consensus 12 ~~~v~r~~~~~~~~~~~~a~~~gGi~~iEvt~~~~~~~~~i~~l~~~~~~~~~iGaGTV~~---~~~~~~a~~aGA~fiv 88 (206)
T PRK09140 12 LIAILRGITPDEALAHVGALIEAGFRAIEIPLNSPDPFDSIAALVKALGDRALIGAGTVLS---PEQVDRLADAGGRLIV 88 (206)
T ss_pred EEEEEeCCCHHHHHHHHHHHHHCCCCEEEEeCCCccHHHHHHHHHHHcCCCcEEeEEecCC---HHHHHHHHHcCCCEEE
Confidence 3444556788888889999999999999999998865445566665553211000000000 0000000000011111
Q ss_pred hccCCCCCHHHHHHHHHhcCCCEEEEeccCHHH----HHcCCcEEEEcCCCccCCCCCcchHHHHHHHHHHcCCCceEEE
Q 017781 206 GQIDRSLSWKDVKWLQTITKLPILVKGVLTAED----VQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFL 281 (366)
Q Consensus 206 ~~~d~~~~~~~i~~lr~~~~~pv~vK~v~~~~d----~~aGad~I~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~i~vi~ 281 (366)
-|..+.+.++..+ ..+.|++. ++.|+++ .++|+|+|.+.-. ....++.+.++++.++.++|+++
T Consensus 89 ---sp~~~~~v~~~~~-~~~~~~~~-G~~t~~E~~~A~~~Gad~vk~Fpa-------~~~G~~~l~~l~~~~~~~ipvva 156 (206)
T PRK09140 89 ---TPNTDPEVIRRAV-ALGMVVMP-GVATPTEAFAALRAGAQALKLFPA-------SQLGPAGIKALRAVLPPDVPVFA 156 (206)
T ss_pred ---CCCCCHHHHHHHH-HCCCcEEc-ccCCHHHHHHHHHcCCCEEEECCC-------CCCCHHHHHHHHhhcCCCCeEEE
Confidence 2334455555554 44666554 5888877 8899999987331 11235667777666643699999
Q ss_pred ecCCCCHHHHHHHHHhCcCEEEecHHHHH
Q 017781 282 DGGVRRGTDVFKALALGASGIFIGRPVVY 310 (366)
Q Consensus 282 ~GGI~~~~dv~kalalGAd~V~igr~~l~ 310 (366)
.||| +.+++...+++||++|.+++.++.
T Consensus 157 iGGI-~~~n~~~~~~aGa~~vav~s~l~~ 184 (206)
T PRK09140 157 VGGV-TPENLAPYLAAGAAGFGLGSALYR 184 (206)
T ss_pred ECCC-CHHHHHHHHHCCCeEEEEehHhcc
Confidence 9999 889999999999999999999864
|
|
| >PRK13585 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Provisional | Back alignment and domain information |
|---|
Probab=98.37 E-value=1.4e-05 Score=74.51 Aligned_cols=69 Identities=26% Similarity=0.388 Sum_probs=56.2
Q ss_pred HHcCCcEEEEcCCCccCCCCCcchHHHHHHHHHHcCCCceEEEecCCCCHHHHHHHHHhCcCEEEecHHHHH
Q 017781 239 VQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFIGRPVVY 310 (366)
Q Consensus 239 ~~aGad~I~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~i~vi~~GGI~~~~dv~kalalGAd~V~igr~~l~ 310 (366)
.+.|++.|.+.+....... ....++.+.++++.+ ++||++.|||++.+|+.+++.+||++|++|+.++.
T Consensus 159 ~~~G~~~i~~~~~~~~g~~-~g~~~~~i~~i~~~~--~iPvia~GGI~~~~di~~~~~~Ga~gv~vgsa~~~ 227 (241)
T PRK13585 159 EELGAGSILFTNVDVEGLL-EGVNTEPVKELVDSV--DIPVIASGGVTTLDDLRALKEAGAAGVVVGSALYK 227 (241)
T ss_pred HHcCCCEEEEEeecCCCCc-CCCCHHHHHHHHHhC--CCCEEEeCCCCCHHHHHHHHHcCCCEEEEEHHHhc
Confidence 6789999998764211111 235788899998887 79999999999999999998999999999999865
|
|
| >TIGR00343 pyridoxal 5'-phosphate synthase, synthase subunit Pdx1 | Back alignment and domain information |
|---|
Probab=98.36 E-value=4.6e-06 Score=78.57 Aligned_cols=94 Identities=26% Similarity=0.326 Sum_probs=75.1
Q ss_pred HHHHHHHHHhcCCCEEEEeccCHHH----HHcCCcEEEEcCCCccCC---------------------C----------C
Q 017781 214 WKDVKWLQTITKLPILVKGVLTAED----VQAGAAGIIVSNHGARQL---------------------D----------Y 258 (366)
Q Consensus 214 ~~~i~~lr~~~~~pv~vK~v~~~~d----~~aGad~I~vs~~gg~~~---------------------~----------~ 258 (366)
.+.+..+|+.++.| ++-++.+.++ .+.|+|.|--.+.||+.. . .
T Consensus 103 de~~~~~K~~f~vp-fmad~~~l~EAlrai~~GadmI~Tt~e~gTg~v~~av~hlr~~~~~~~~~~~~~~~~~~~~~a~~ 181 (287)
T TIGR00343 103 DWTFHIDKKKFKVP-FVCGARDLGEALRRINEGAAMIRTKGEAGTGNIVEAVRHMRKINEEIRQIQNMLEEEDLAAVAKE 181 (287)
T ss_pred HHHHHHHHHHcCCC-EEccCCCHHHHHHHHHCCCCEEeccccCCCccHHHHHHHHHHHHHHHHHHhcccchhHHhhhhcc
Confidence 45578888888777 5567778887 999999998776665431 0 0
Q ss_pred CcchHHHHHHHHHHcCCCceEE--EecCCCCHHHHHHHHHhCcCEEEecHHHHH
Q 017781 259 VPATIMALEEVVKATQGRIPVF--LDGGVRRGTDVFKALALGASGIFIGRPVVY 310 (366)
Q Consensus 259 ~~~~~~~l~~i~~~~~~~i~vi--~~GGI~~~~dv~kalalGAd~V~igr~~l~ 310 (366)
-.+.++.|.++++.. ++||+ +.|||.|++|+.+++.+|||+|.+|+.++.
T Consensus 182 ~~~~~elLkei~~~~--~iPVV~fAiGGI~TPedAa~~melGAdGVaVGSaI~k 233 (287)
T TIGR00343 182 LRVPVELLLEVLKLG--KLPVVNFAAGGVATPADAALMMQLGADGVFVGSGIFK 233 (287)
T ss_pred cCCCHHHHHHHHHhC--CCCEEEeccCCCCCHHHHHHHHHcCCCEEEEhHHhhc
Confidence 125678888888866 79998 999999999999999999999999999864
|
This protein had been believed to be a singlet oxygen resistance protein. Subsequent work showed that it is a protein of pyridoxine (vitamin B6) biosynthesis, and that pyridoxine quenches the highly toxic singlet form of oxygen produced by light in the presence of certain chemicals. |
| >TIGR00007 phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase | Back alignment and domain information |
|---|
Probab=98.36 E-value=3.4e-06 Score=77.99 Aligned_cols=70 Identities=26% Similarity=0.384 Sum_probs=56.5
Q ss_pred HHcCCcEEEEcCCCccCCCCCcchHHHHHHHHHHcCCCceEEEecCCCCHHHHHHHHHhCcCEEEecHHHHHH
Q 017781 239 VQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFIGRPVVYS 311 (366)
Q Consensus 239 ~~aGad~I~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~i~vi~~GGI~~~~dv~kalalGAd~V~igr~~l~~ 311 (366)
.+.|++.+++..........+ ..++.+.++++.+ ++||++.|||++.+|+.+++..|||+|++|+.++.+
T Consensus 155 ~~~g~~~ii~~~~~~~g~~~g-~~~~~i~~i~~~~--~ipvia~GGi~~~~di~~~~~~Gadgv~ig~a~~~~ 224 (230)
T TIGR00007 155 EELGLEGIIYTDISRDGTLSG-PNFELTKELVKAV--NVPVIASGGVSSIDDLIALKKLGVYGVIVGKALYEG 224 (230)
T ss_pred HhCCCCEEEEEeecCCCCcCC-CCHHHHHHHHHhC--CCCEEEeCCCCCHHHHHHHHHCCCCEEEEeHHHHcC
Confidence 778999888764322112233 4688888888876 799999999999999999999999999999999764
|
Examples of this enzyme in Actinobacteria have been found to be bifunctional, also possessing phosphoribosylanthranilate isomerase activity ; the trusted cutoff here has now been raised to 275.0 to exclude the bifunctional group, now represented by model TIGR01919. HisA from Lactococcus lactis was reported to be inactive (MEDLINE:93322317). |
| >PRK01033 imidazole glycerol phosphate synthase subunit HisF; Provisional | Back alignment and domain information |
|---|
Probab=98.32 E-value=4.1e-06 Score=79.16 Aligned_cols=70 Identities=23% Similarity=0.294 Sum_probs=59.0
Q ss_pred HHcCCcEEEEcCCCccCCCCCcchHHHHHHHHHHcCCCceEEEecCCCCHHHHHHHH-HhCcCEEEecHHHHHH
Q 017781 239 VQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKAL-ALGASGIFIGRPVVYS 311 (366)
Q Consensus 239 ~~aGad~I~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~i~vi~~GGI~~~~dv~kal-alGAd~V~igr~~l~~ 311 (366)
.+.|++.+++.+...-+...| +.++.+.++.+.+ ++|||++|||++.+|+.+++ ..|+++|.+|++|.|.
T Consensus 162 ~~~g~~~ii~~~i~~~G~~~G-~d~~~i~~~~~~~--~ipvIasGGv~s~eD~~~l~~~~GvdgVivg~a~~~~ 232 (258)
T PRK01033 162 EALGAGEILLNSIDRDGTMKG-YDLELLKSFRNAL--KIPLIALGGAGSLDDIVEAILNLGADAAAAGSLFVFK 232 (258)
T ss_pred HHcCCCEEEEEccCCCCCcCC-CCHHHHHHHHhhC--CCCEEEeCCCCCHHHHHHHHHHCCCCEEEEcceeeeC
Confidence 799999999875432223345 4889999998887 79999999999999999999 7999999999999884
|
|
| >PRK13111 trpA tryptophan synthase subunit alpha; Provisional | Back alignment and domain information |
|---|
Probab=98.31 E-value=7.9e-05 Score=70.37 Aligned_cols=49 Identities=18% Similarity=0.286 Sum_probs=42.2
Q ss_pred hHHHHHHHHHHcCCCceEEEecCCCCHHHHHHHHHhCcCEEEecHHHHHHhh
Q 017781 262 TIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFIGRPVVYSLA 313 (366)
Q Consensus 262 ~~~~l~~i~~~~~~~i~vi~~GGI~~~~dv~kalalGAd~V~igr~~l~~l~ 313 (366)
..+.+.++++.. ++||++.+||++++|+.+++.. ||+|.+|++|+..+.
T Consensus 188 ~~~~i~~vk~~~--~~pv~vGfGI~~~e~v~~~~~~-ADGviVGSaiv~~~~ 236 (258)
T PRK13111 188 LAELVARLKAHT--DLPVAVGFGISTPEQAAAIAAV-ADGVIVGSALVKIIE 236 (258)
T ss_pred HHHHHHHHHhcC--CCcEEEEcccCCHHHHHHHHHh-CCEEEEcHHHHHHHH
Confidence 445778888765 7999999999999999999976 999999999987654
|
|
| >cd04732 HisA HisA | Back alignment and domain information |
|---|
Probab=98.30 E-value=6.3e-06 Score=76.27 Aligned_cols=70 Identities=24% Similarity=0.345 Sum_probs=58.1
Q ss_pred HHcCCcEEEEcCCCccCCCCCcchHHHHHHHHHHcCCCceEEEecCCCCHHHHHHHHHhCcCEEEecHHHHHH
Q 017781 239 VQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFIGRPVVYS 311 (366)
Q Consensus 239 ~~aGad~I~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~i~vi~~GGI~~~~dv~kalalGAd~V~igr~~l~~ 311 (366)
.+.|++.+++....-.+...+ +.++.+.++++.+ ++||++.|||++.+|+.+++..||++|++||.++.+
T Consensus 156 ~~~ga~~iii~~~~~~g~~~g-~~~~~i~~i~~~~--~ipvi~~GGi~~~~di~~~~~~Ga~gv~vg~~~~~~ 225 (234)
T cd04732 156 EELGVKAIIYTDISRDGTLSG-PNFELYKELAAAT--GIPVIASGGVSSLDDIKALKELGVAGVIVGKALYEG 225 (234)
T ss_pred HHcCCCEEEEEeecCCCccCC-CCHHHHHHHHHhc--CCCEEEecCCCCHHHHHHHHHCCCCEEEEeHHHHcC
Confidence 788999999875322112234 6788999998887 799999999999999999999999999999998764
|
Phosphoribosylformimino-5-aminoimidazole carboxamide ribonucleotide (ProFAR) isomerase catalyzes the fourth step in histidine biosynthesis, an isomerisation of the aminoaldose moiety of ProFAR to the aminoketose of PRFAR (N-(5'-phospho-D-1'-ribulosylformimino)-5-amino-1-(5''-phospho-ribosyl)-4-imidazolecarboxamide). In bacteria and archaea, ProFAR isomerase is encoded by the HisA gene. |
| >KOG0399 consensus Glutamate synthase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.28 E-value=5.6e-06 Score=89.26 Aligned_cols=138 Identities=27% Similarity=0.276 Sum_probs=101.2
Q ss_pred CCHHHHHHHHHhc-----CCCEEEEeccC-----HHH--HHcCCcEEEEcCC-CccCC------CCCcchHHH-HHHHHH
Q 017781 212 LSWKDVKWLQTIT-----KLPILVKGVLT-----AED--VQAGAAGIIVSNH-GARQL------DYVPATIMA-LEEVVK 271 (366)
Q Consensus 212 ~~~~~i~~lr~~~-----~~pv~vK~v~~-----~~d--~~aGad~I~vs~~-gg~~~------~~~~~~~~~-l~~i~~ 271 (366)
++.++++++.-.. .-.|.||.+.- +.. .++.||.|.||+| ||+.. ...-.+|+. |.|..+
T Consensus 1080 YSIEDLaQLIyDLk~aNP~ArVSVKLVSEaGVGiVASGVaK~~ADhI~vSGhDGGTGAS~wt~IK~AGlPWELGlAEThQ 1159 (2142)
T KOG0399|consen 1080 YSIEDLAQLIYDLKCANPRARVSVKLVSEAGVGIVASGVAKGNADHILVSGHDGGTGASRWTGIKHAGLPWELGLAETHQ 1159 (2142)
T ss_pred ccHHHHHHHHHHhhccCCCceeEEEEEecccceeeeeccccccCceEEEeccCCCcCcccccccccCCCChhhcchhhhh
Confidence 4667766655332 34689997742 222 8888999999999 44321 111123432 344433
Q ss_pred H-----cCCCceEEEecCCCCHHHHHHHHHhCcCEEEecHHHHHHhhhc--------------------------C-HHH
Q 017781 272 A-----TQGRIPVFLDGGVRRGTDVFKALALGASGIFIGRPVVYSLAAE--------------------------G-EKG 319 (366)
Q Consensus 272 ~-----~~~~i~vi~~GGI~~~~dv~kalalGAd~V~igr~~l~~l~~~--------------------------G-~~g 319 (366)
. +++++-+-.||+++||.||+-|-++||+-.++++.-|.++.|- | ++-
T Consensus 1160 tLv~NdLR~rvVlqtDGqlrtG~DV~iAallGAeefgf~T~plIalGCiMmRkCH~NtCpVGiAtQdp~LRakF~G~Peh 1239 (2142)
T KOG0399|consen 1160 TLVLNDLRGRVVLQTDGQLRTGRDVAIAALLGAEEFGFSTAPLIALGCIMMRKCHLNTCPVGIATQDPELRAKFPGQPEH 1239 (2142)
T ss_pred HHhhccccccEEEEecCccccchHHHHHHHhCchhhcccccHHHHHhhHHHHHhccCCCCcccccCCHHHHhhCCCCcHH
Confidence 2 4568889999999999999999999999999999777776542 3 356
Q ss_pred HHHHHHHHHHHHHHHHHHcCCCChhhhccc
Q 017781 320 VRRVLEMLREEFELAMALSGCRSLKEITRD 349 (366)
Q Consensus 320 v~~~~~~l~~el~~~m~~~G~~~l~el~~~ 349 (366)
|.+++-.+.+|++..|..+|+++++|+-++
T Consensus 1240 vVNff~yvaEEvR~imakLGfrtldemvGr 1269 (2142)
T KOG0399|consen 1240 VVNFFFYVAEEVRGIMAKLGFRTLDEMVGR 1269 (2142)
T ss_pred HHHHHHHHHHHHHHHHHHhCcchHHHHhcc
Confidence 889999999999999999999999999755
|
|
| >PRK14024 phosphoribosyl isomerase A; Provisional | Back alignment and domain information |
|---|
Probab=98.27 E-value=2.3e-06 Score=80.04 Aligned_cols=70 Identities=26% Similarity=0.347 Sum_probs=58.7
Q ss_pred HHcCCcEEEEcCCCccCCCCCcchHHHHHHHHHHcCCCceEEEecCCCCHHHHHHHHHh---CcCEEEecHHHHHH
Q 017781 239 VQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALAL---GASGIFIGRPVVYS 311 (366)
Q Consensus 239 ~~aGad~I~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~i~vi~~GGI~~~~dv~kalal---GAd~V~igr~~l~~ 311 (366)
.+.|++.+++++...-+...|+ .++.+.++.+.+ ++|||++|||++.+|+.+++.+ |||+|++||+++.+
T Consensus 156 ~~~G~~~iiv~~~~~~g~~~G~-d~~~i~~i~~~~--~ipviasGGi~s~~D~~~l~~~~~~GvdgV~igra~~~g 228 (241)
T PRK14024 156 DSAGCSRYVVTDVTKDGTLTGP-NLELLREVCART--DAPVVASGGVSSLDDLRALAELVPLGVEGAIVGKALYAG 228 (241)
T ss_pred HhcCCCEEEEEeecCCCCccCC-CHHHHHHHHhhC--CCCEEEeCCCCCHHHHHHHhhhccCCccEEEEeHHHHcC
Confidence 6889999999865433334454 899999999887 7999999999999999998754 99999999999864
|
|
| >PLN02591 tryptophan synthase | Back alignment and domain information |
|---|
Probab=98.27 E-value=0.00011 Score=68.94 Aligned_cols=48 Identities=25% Similarity=0.389 Sum_probs=41.4
Q ss_pred HHHHHHHHHHcCCCceEEEecCCCCHHHHHHHHHhCcCEEEecHHHHHHh
Q 017781 263 IMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFIGRPVVYSL 312 (366)
Q Consensus 263 ~~~l~~i~~~~~~~i~vi~~GGI~~~~dv~kalalGAd~V~igr~~l~~l 312 (366)
.+.+.++++.. ++||+.--||++++|+.+++..|||+|.+|++++..+
T Consensus 178 ~~~i~~vk~~~--~~Pv~vGFGI~~~e~v~~~~~~GADGvIVGSalVk~i 225 (250)
T PLN02591 178 ESLLQELKEVT--DKPVAVGFGISKPEHAKQIAGWGADGVIVGSAMVKAL 225 (250)
T ss_pred HHHHHHHHhcC--CCceEEeCCCCCHHHHHHHHhcCCCEEEECHHHHHhh
Confidence 34577777654 8999998899999999999999999999999998754
|
|
| >cd00452 KDPG_aldolase KDPG and KHG aldolase | Back alignment and domain information |
|---|
Probab=98.24 E-value=4.9e-05 Score=68.42 Aligned_cols=166 Identities=17% Similarity=0.180 Sum_probs=98.0
Q ss_pred EEEeeecCCHHHHHHHHHHHHHcCCCEEEEecCCCCCcchhHHHhhhcCCCCccccccccccccCCCccccchhhHHHhh
Q 017781 126 FFQLYVYKDRNVVAQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLTLKNFQGLDLGKMDEANDSGLAAYVA 205 (366)
Q Consensus 126 ~~Qly~~~d~~~~~~~l~ra~~~G~~ai~vtvd~p~~g~r~~d~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 205 (366)
.+-+....+.+...++++.+.+.|++.+.++...+..-.-.+.++..++ ...+...++. ..............++.
T Consensus 6 ~~~i~r~~~~~~~~~~~~~l~~~G~~~vev~~~~~~~~~~i~~l~~~~~-~~~iGag~v~---~~~~~~~a~~~Ga~~i~ 81 (190)
T cd00452 6 LVAVLRGDDAEDALALAEALIEGGIRAIEITLRTPGALEAIRALRKEFP-EALIGAGTVL---TPEQADAAIAAGAQFIV 81 (190)
T ss_pred EEEEEEcCCHHHHHHHHHHHHHCCCCEEEEeCCChhHHHHHHHHHHHCC-CCEEEEEeCC---CHHHHHHHHHcCCCEEE
Confidence 3445556778888888888888999999998876642222233333331 0000000000 00000000000001111
Q ss_pred hccCCCCCHHHHHHHHHhcCCCEEEEeccCHHH----HHcCCcEEEEcCCCccCCCCCcchHHHHHHHHHHcCCCceEEE
Q 017781 206 GQIDRSLSWKDVKWLQTITKLPILVKGVLTAED----VQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFL 281 (366)
Q Consensus 206 ~~~d~~~~~~~i~~lr~~~~~pv~vK~v~~~~d----~~aGad~I~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~i~vi~ 281 (366)
-+..+.+.++.. +..+.|+++ ++.|.++ .++|+|.|.+... .+...+.+..+++..+ .+|+++
T Consensus 82 ---~p~~~~~~~~~~-~~~~~~~i~-gv~t~~e~~~A~~~Gad~i~~~p~-------~~~g~~~~~~l~~~~~-~~p~~a 148 (190)
T cd00452 82 ---SPGLDPEVVKAA-NRAGIPLLP-GVATPTEIMQALELGADIVKLFPA-------EAVGPAYIKALKGPFP-QVRFMP 148 (190)
T ss_pred ---cCCCCHHHHHHH-HHcCCcEEC-CcCCHHHHHHHHHCCCCEEEEcCC-------cccCHHHHHHHHhhCC-CCeEEE
Confidence 122233444444 446777766 7778887 8899999988431 1123455666655443 589999
Q ss_pred ecCCCCHHHHHHHHHhCcCEEEecHHHH
Q 017781 282 DGGVRRGTDVFKALALGASGIFIGRPVV 309 (366)
Q Consensus 282 ~GGI~~~~dv~kalalGAd~V~igr~~l 309 (366)
.||| +.+++.+.+.+||++|.+++.+.
T Consensus 149 ~GGI-~~~n~~~~~~~G~~~v~v~s~i~ 175 (190)
T cd00452 149 TGGV-SLDNAAEWLAAGVVAVGGGSLLP 175 (190)
T ss_pred eCCC-CHHHHHHHHHCCCEEEEEchhcc
Confidence 9999 99999999999999999999876
|
This family belongs to the class I adolases whose reaction mechanism involves Schiff base formation between a substrate carbonyl and lysine residue in the active site. 2-keto-3-deoxy-6-phosphogluconate (KDPG) aldolase, is best known for its role in the Entner-Doudoroff pathway of bacteria, where it catalyzes the reversible cleavage of KDPG to pyruvate and glyceraldehyde-3-phosphate. 2-keto-4-hydroxyglutarate (KHG) aldolase, which has enzymatic specificity toward glyoxylate, forming KHG in the presence of pyruvate, and is capable of regulating glyoxylate levels in the glyoxylate bypass, an alternate pathway when bacteria are grown on acetate carbon sources. |
| >cd04731 HisF The cyclase subunit of imidazoleglycerol phosphate synthase (HisF) | Back alignment and domain information |
|---|
Probab=98.23 E-value=4.8e-06 Score=77.78 Aligned_cols=70 Identities=19% Similarity=0.280 Sum_probs=56.0
Q ss_pred HHcCCcEEEEcCCCccCCCCCcchHHHHHHHHHHcCCCceEEEecCCCCHHHHHHHHHh-CcCEEEecHHHHHH
Q 017781 239 VQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALAL-GASGIFIGRPVVYS 311 (366)
Q Consensus 239 ~~aGad~I~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~i~vi~~GGI~~~~dv~kalal-GAd~V~igr~~l~~ 311 (366)
.+.|+|.|.+++........+ ..++.+.++.+.+ ++|||++|||++.+|+.+++.. |||+|++||++..+
T Consensus 159 ~~~G~d~i~v~~i~~~g~~~g-~~~~~i~~i~~~~--~~pvia~GGi~~~~di~~~l~~~g~dgv~vg~al~~~ 229 (243)
T cd04731 159 EELGAGEILLTSMDRDGTKKG-YDLELIRAVSSAV--NIPVIASGGAGKPEHFVEAFEEGGADAALAASIFHFG 229 (243)
T ss_pred HHCCCCEEEEeccCCCCCCCC-CCHHHHHHHHhhC--CCCEEEeCCCCCHHHHHHHHHhCCCCEEEEeHHHHcC
Confidence 678999999976321111112 3678888888776 8999999999999999999997 99999999999764
|
Imidazole glycerol phosphate synthase (IGPS) catalyzes the fifth step of histidine biosynthesis, the formation of the imidazole ring. IGPS converts N1-(5'-phosphoribulosyl)-formimino-5-aminoimidazole-4-carboxamide ribonucleotide (PRFAR) to imidazole glycerol phosphate (ImGP) and 5'-(5-aminoimidazole-4-carboxamide) ribonucleotide (AICAR). This conversion involves two tightly coupled reactions in distinct active sites of IGPS. The two catalytic domains can be fused, like in fungi and plants, or peformed by a heterodimer (HisH-glutaminase and HisF-cyclase), like in bacteria. |
| >PRK07695 transcriptional regulator TenI; Provisional | Back alignment and domain information |
|---|
Probab=98.19 E-value=2.7e-05 Score=70.67 Aligned_cols=90 Identities=21% Similarity=0.258 Sum_probs=64.0
Q ss_pred HHHHHHhcC-CCEEEEeccCHHH----HHcCCcEEEEcCCCccC-C-CCCcchHHHHHHHHHHcCCCceEEEecCCCCHH
Q 017781 217 VKWLQTITK-LPILVKGVLTAED----VQAGAAGIIVSNHGARQ-L-DYVPATIMALEEVVKATQGRIPVFLDGGVRRGT 289 (366)
Q Consensus 217 i~~lr~~~~-~pv~vK~v~~~~d----~~aGad~I~vs~~gg~~-~-~~~~~~~~~l~~i~~~~~~~i~vi~~GGI~~~~ 289 (366)
++.+|+..+ ..|.+ .+.+.++ .++|+|+|.++....+. . ...+..++.+.++.+.+ ++||++.||| +.+
T Consensus 86 ~~~~r~~~~~~~ig~-s~~s~e~a~~a~~~Gadyi~~g~v~~t~~k~~~~~~g~~~l~~~~~~~--~ipvia~GGI-~~~ 161 (201)
T PRK07695 86 VRSVREKFPYLHVGY-SVHSLEEAIQAEKNGADYVVYGHVFPTDCKKGVPARGLEELSDIARAL--SIPVIAIGGI-TPE 161 (201)
T ss_pred HHHHHHhCCCCEEEE-eCCCHHHHHHHHHcCCCEEEECCCCCCCCCCCCCCCCHHHHHHHHHhC--CCCEEEEcCC-CHH
Confidence 345555542 33444 4556666 68999999765422221 1 11233567788887766 7999999999 999
Q ss_pred HHHHHHHhCcCEEEecHHHHH
Q 017781 290 DVFKALALGASGIFIGRPVVY 310 (366)
Q Consensus 290 dv~kalalGAd~V~igr~~l~ 310 (366)
++.+++.+||++|++|+.+..
T Consensus 162 ~~~~~~~~Ga~gvav~s~i~~ 182 (201)
T PRK07695 162 NTRDVLAAGVSGIAVMSGIFS 182 (201)
T ss_pred HHHHHHHcCCCEEEEEHHHhc
Confidence 999999999999999999875
|
|
| >PF00724 Oxidored_FMN: NADH:flavin oxidoreductase / NADH oxidase family; InterPro: IPR001155 The TIM-barrel fold is a closed barrel structure composed of an eight-fold repeat of beta-alpha units, where the eight parallel beta strands on the inside are covered by the eight alpha helices on the outside [] | Back alignment and domain information |
|---|
Probab=98.19 E-value=7e-06 Score=80.67 Aligned_cols=98 Identities=24% Similarity=0.311 Sum_probs=70.2
Q ss_pred CCHHHHHHHHHhc--CCCEEEEeccC--------HHH--------HHcCCcEEEEcCCCcc------C-CC--CCc-chH
Q 017781 212 LSWKDVKWLQTIT--KLPILVKGVLT--------AED--------VQAGAAGIIVSNHGAR------Q-LD--YVP-ATI 263 (366)
Q Consensus 212 ~~~~~i~~lr~~~--~~pv~vK~v~~--------~~d--------~~aGad~I~vs~~gg~------~-~~--~~~-~~~ 263 (366)
+..+.|+.+|+.+ +.||.+|.... .+| .++|+|.+.++...+. . .. ..+ ..+
T Consensus 201 f~~Eii~aIr~~vg~d~~v~~Rls~~~~~~~g~~~~e~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 280 (341)
T PF00724_consen 201 FLLEIIEAIREAVGPDFPVGVRLSPDDFVEGGITLEETIEIAKLLEELGVDFLDVSHGSYVHWSEPRPSPPFDFEPGYNL 280 (341)
T ss_dssp HHHHHHHHHHHHHTGGGEEEEEEETTCSSTTSHHSHHHHHHHHHHHHHHHTTEEEEEESEEEEEBTSSTTTTTTTTTTTH
T ss_pred HHHHHHHHHHHHhcCCceEEEEEeeecccCCCCchHHHHHHHHHHHHHhhhhccccccccccccccccccccccccchhh
Confidence 4678899999997 57899996531 122 6778888876532211 0 01 111 123
Q ss_pred HHHHHHHHHcCCCceEEEecCCCCHHHHHHHHHhC-cCEEEecHHHHHH
Q 017781 264 MALEEVVKATQGRIPVFLDGGVRRGTDVFKALALG-ASGIFIGRPVVYS 311 (366)
Q Consensus 264 ~~l~~i~~~~~~~i~vi~~GGI~~~~dv~kalalG-Ad~V~igr~~l~~ 311 (366)
.....+++.+ ++|||+.|||++++.+.++++.| ||+|++||+++..
T Consensus 281 ~~a~~ik~~~--~~pvi~~G~i~~~~~ae~~l~~g~~DlV~~gR~~lad 327 (341)
T PF00724_consen 281 DLAEAIKKAV--KIPVIGVGGIRTPEQAEKALEEGKADLVAMGRPLLAD 327 (341)
T ss_dssp HHHHHHHHHH--SSEEEEESSTTHHHHHHHHHHTTSTSEEEESHHHHH-
T ss_pred hhhhhhhhhc--CceEEEEeeecchhhhHHHHhcCCceEeeccHHHHhC
Confidence 4556677777 79999999999999999999988 9999999999863
|
It is a widely distributed fold which has been found in many enzyme families that catalyse completely unrelated reactions []. The active site is always found at the C-terminal end of this domain. Proteins in this entry are a variety of NADH:flavin oxidoreductase/NADH oxidase enzymes, found mostly in bacteria or fungi, that contain a TIM-barrel fold. They commonly use FMN/FAD as cofactor and include: dimethylamine dehydrogenase trimethylamine dehydrogenase 12-oxophytodienoate reductase NADPH dehydrogenase NADH oxidase ; GO: 0010181 FMN binding, 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 3GKA_B 3P67_A 3F03_K 2ABA_A 1VYR_A 1GVO_A 3KFT_B 3P8I_A 1GVQ_A 3P74_A .... |
| >cd04728 ThiG Thiazole synthase (ThiG) is the tetrameric enzyme that is involved in the formation of the thiazole moiety of thiamin pyrophosphate, an essential ubiquitous cofactor that plays an important role in carbohydrate and amino acid metabolism | Back alignment and domain information |
|---|
Probab=98.18 E-value=1.1e-05 Score=74.67 Aligned_cols=68 Identities=19% Similarity=0.354 Sum_probs=54.0
Q ss_pred HHcCCcEEEEcCCC-ccCCCCCcchHHHHHHHHHHcCCCceEEEecCCCCHHHHHHHHHhCcCEEEecHHHHH
Q 017781 239 VQAGAAGIIVSNHG-ARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFIGRPVVY 310 (366)
Q Consensus 239 ~~aGad~I~vs~~g-g~~~~~~~~~~~~l~~i~~~~~~~i~vi~~GGI~~~~dv~kalalGAd~V~igr~~l~ 310 (366)
.++|++.|-.-+.. |.. .|....+.+..+++.. ++|||++|||.+++|+.+++.+|||+|++|+++..
T Consensus 141 ~~~G~~~vmPlg~pIGsg--~Gi~~~~~I~~I~e~~--~vpVI~egGI~tpeda~~AmelGAdgVlV~SAIt~ 209 (248)
T cd04728 141 EDAGCAAVMPLGSPIGSG--QGLLNPYNLRIIIERA--DVPVIVDAGIGTPSDAAQAMELGADAVLLNTAIAK 209 (248)
T ss_pred HHcCCCEeCCCCcCCCCC--CCCCCHHHHHHHHHhC--CCcEEEeCCCCCHHHHHHHHHcCCCEEEEChHhcC
Confidence 89999999542210 111 2555677888887765 79999999999999999999999999999998864
|
ThiG catalyzes the formation of thiazole from 1-deoxy-D-xylulose 5-phosphate (DXP) and dehydroglycine, with the help of the sulfur carrier protein ThiS that carries the sulfur needed for thiazole assembly on its carboxy terminus (ThiS-COSH). |
| >TIGR00126 deoC deoxyribose-phosphate aldolase | Back alignment and domain information |
|---|
Probab=98.17 E-value=2.7e-05 Score=71.30 Aligned_cols=88 Identities=26% Similarity=0.287 Sum_probs=64.4
Q ss_pred CHHHHHHHHHhcCCCEEEEec-----cCHHH--------HHcCCcEEEEcCCCccCCCCCcchHHHHHHHHHHcCCCceE
Q 017781 213 SWKDVKWLQTITKLPILVKGV-----LTAED--------VQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPV 279 (366)
Q Consensus 213 ~~~~i~~lr~~~~~pv~vK~v-----~~~~d--------~~aGad~I~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~i~v 279 (366)
..++++++++..+ .+.+|.+ ++.++ .++|+|+|..|...+ .+..+.+.+..+++.++++++|
T Consensus 104 v~~ei~~i~~~~~-g~~lKvIlE~~~L~~~ei~~a~~ia~eaGADfvKTsTGf~----~~gat~~dv~~m~~~v~~~v~I 178 (211)
T TIGR00126 104 VYDDIRAVVEACA-GVLLKVIIETGLLTDEEIRKACEICIDAGADFVKTSTGFG----AGGATVEDVRLMRNTVGDTIGV 178 (211)
T ss_pred HHHHHHHHHHHcC-CCeEEEEEecCCCCHHHHHHHHHHHHHhCCCEEEeCCCCC----CCCCCHHHHHHHHHHhccCCeE
Confidence 4567888888764 3445544 34343 999999999875321 1235666666666677678999
Q ss_pred EEecCCCCHHHHHHHHHhCcCEEEec
Q 017781 280 FLDGGVRRGTDVFKALALGASGIFIG 305 (366)
Q Consensus 280 i~~GGI~~~~dv~kalalGAd~V~ig 305 (366)
-++||||+.+|+++.+.+||+-++..
T Consensus 179 KaaGGirt~~~a~~~i~aGa~riGts 204 (211)
T TIGR00126 179 KASGGVRTAEDAIAMIEAGASRIGAS 204 (211)
T ss_pred EEeCCCCCHHHHHHHHHHhhHHhCcc
Confidence 99999999999999999999988654
|
Deoxyribose-phosphate aldolase is involved in the catabolism of nucleotides and deoxyriibonucleotides. The catalytic process is as follows: 2-deoxy-D-ribose 5-phosphate = D-glyceraldehyde 3-phosphate + acetaldehyde. It is found in both gram-postive and gram-negative bacteria. |
| >TIGR01304 IMP_DH_rel_2 IMP dehydrogenase family protein | Back alignment and domain information |
|---|
Probab=98.16 E-value=7e-06 Score=81.09 Aligned_cols=92 Identities=18% Similarity=0.316 Sum_probs=68.4
Q ss_pred CCCCCHHHHHHHHHhcCCCEEEEeccCH---HH-----HHcCCcEEEEcCCCccCCC-CCcchHHHHHHHHHHcCCCceE
Q 017781 209 DRSLSWKDVKWLQTITKLPILVKGVLTA---ED-----VQAGAAGIIVSNHGARQLD-YVPATIMALEEVVKATQGRIPV 279 (366)
Q Consensus 209 d~~~~~~~i~~lr~~~~~pv~vK~v~~~---~d-----~~aGad~I~vs~~gg~~~~-~~~~~~~~l~~i~~~~~~~i~v 279 (366)
++++..+.++++|+. .+.+|...++ .+ .++|+|.|+++++.-.|.+ .+...+..+.++.+.+ ++||
T Consensus 117 ~p~l~~~ii~~vr~a---~VtvkiRl~~~~~~e~a~~l~eAGad~I~ihgrt~~q~~~sg~~~p~~l~~~i~~~--~IPV 191 (369)
T TIGR01304 117 KPELLGERIAEVRDS---GVITAVRVSPQNAREIAPIVVKAGADLLVIQGTLVSAEHVSTSGEPLNLKEFIGEL--DVPV 191 (369)
T ss_pred ChHHHHHHHHHHHhc---ceEEEEecCCcCHHHHHHHHHHCCCCEEEEeccchhhhccCCCCCHHHHHHHHHHC--CCCE
Confidence 444555678888885 2788877543 23 8999999999875422322 2223456677777776 7999
Q ss_pred EEecCCCCHHHHHHHHHhCcCEEEecH
Q 017781 280 FLDGGVRRGTDVFKALALGASGIFIGR 306 (366)
Q Consensus 280 i~~GGI~~~~dv~kalalGAd~V~igr 306 (366)
|+ |+|.+.+++.+++.+|||+|++|+
T Consensus 192 I~-G~V~t~e~A~~~~~aGaDgV~~G~ 217 (369)
T TIGR01304 192 IA-GGVNDYTTALHLMRTGAAGVIVGP 217 (369)
T ss_pred EE-eCCCCHHHHHHHHHcCCCEEEECC
Confidence 98 999999999999999999999885
|
This model represents a family of proteins, often annotated as a putative IMP dehydrogenase, related to IMP dehydrogenase and GMP reductase. Most species with a member of this family belong to the high GC Gram-positive bacteria, and these also have the IMP dehydrogenase described by TIGRFAMs equivalog model TIGR01302. |
| >PRK00748 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Validated | Back alignment and domain information |
|---|
Probab=98.15 E-value=6.5e-06 Score=76.18 Aligned_cols=70 Identities=27% Similarity=0.371 Sum_probs=56.8
Q ss_pred HHcCCcEEEEcCCCccCCCCCcchHHHHHHHHHHcCCCceEEEecCCCCHHHHHHHHHhC-cCEEEecHHHHHH
Q 017781 239 VQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALG-ASGIFIGRPVVYS 311 (366)
Q Consensus 239 ~~aGad~I~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~i~vi~~GGI~~~~dv~kalalG-Ad~V~igr~~l~~ 311 (366)
.+.|++.|.+.....-+...| +.++.+.++.+.+ .+|||++|||++.+|+.+++..| |++|++||+++++
T Consensus 156 ~~~g~~~ii~~~~~~~g~~~G-~d~~~i~~l~~~~--~ipvia~GGi~~~~di~~~~~~g~~~gv~vg~a~~~~ 226 (233)
T PRK00748 156 EDAGVKAIIYTDISRDGTLSG-PNVEATRELAAAV--PIPVIASGGVSSLDDIKALKGLGAVEGVIVGRALYEG 226 (233)
T ss_pred HhcCCCEEEEeeecCcCCcCC-CCHHHHHHHHHhC--CCCEEEeCCCCCHHHHHHHHHcCCccEEEEEHHHHcC
Confidence 677999887764321112234 5789999998887 69999999999999999999998 9999999999864
|
|
| >COG0274 DeoC Deoxyribose-phosphate aldolase [Nucleotide transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.13 E-value=4.9e-05 Score=69.36 Aligned_cols=90 Identities=22% Similarity=0.265 Sum_probs=69.5
Q ss_pred CHHHHHHHHHhcCCCEEEEec-----cCHHH--------HHcCCcEEEEcCCCccCCCCCcchHHHHHHHHHHcCCCceE
Q 017781 213 SWKDVKWLQTITKLPILVKGV-----LTAED--------VQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPV 279 (366)
Q Consensus 213 ~~~~i~~lr~~~~~pv~vK~v-----~~~~d--------~~aGad~I~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~i~v 279 (366)
..++|+.+++..+-++.+|.+ ++.++ .++|+|+|.-|.... .+..+.+.+.-.++.+++++.|
T Consensus 111 V~~eI~~v~~a~~~~~~lKVIlEt~~Lt~ee~~~A~~i~~~aGAdFVKTSTGf~----~~gAT~edv~lM~~~vg~~vgv 186 (228)
T COG0274 111 VEREIRAVVEACADAVVLKVILETGLLTDEEKRKACEIAIEAGADFVKTSTGFS----AGGATVEDVKLMKETVGGRVGV 186 (228)
T ss_pred HHHHHHHHHHHhCCCceEEEEEeccccCHHHHHHHHHHHHHhCCCEEEcCCCCC----CCCCCHHHHHHHHHHhccCcee
Confidence 345688888888666888966 34444 999999999876322 3446777777777777778999
Q ss_pred EEecCCCCHHHHHHHHHhCcCEEEecH
Q 017781 280 FLDGGVRRGTDVFKALALGASGIFIGR 306 (366)
Q Consensus 280 i~~GGI~~~~dv~kalalGAd~V~igr 306 (366)
=++|||||.+|+.+++.+||.-++..+
T Consensus 187 KaSGGIrt~eda~~~i~aga~RiGtSs 213 (228)
T COG0274 187 KASGGIRTAEDAKAMIEAGATRIGTSS 213 (228)
T ss_pred eccCCcCCHHHHHHHHHHhHHHhcccc
Confidence 999999999999999999977665544
|
|
| >PRK00208 thiG thiazole synthase; Reviewed | Back alignment and domain information |
|---|
Probab=98.12 E-value=1.7e-05 Score=73.41 Aligned_cols=67 Identities=21% Similarity=0.407 Sum_probs=53.4
Q ss_pred HHcCCcEEEEcC--CCccCCCCCcchHHHHHHHHHHcCCCceEEEecCCCCHHHHHHHHHhCcCEEEecHHHHH
Q 017781 239 VQAGAAGIIVSN--HGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFIGRPVVY 310 (366)
Q Consensus 239 ~~aGad~I~vs~--~gg~~~~~~~~~~~~l~~i~~~~~~~i~vi~~GGI~~~~dv~kalalGAd~V~igr~~l~ 310 (366)
.++|+|.|-.-+ -| .. .|....+.+..+++.. ++|||++|||.+++|+.+++.+|||+|++++.+..
T Consensus 141 ~~~G~~~vmPlg~pIG-sg--~gi~~~~~i~~i~e~~--~vpVIveaGI~tpeda~~AmelGAdgVlV~SAItk 209 (250)
T PRK00208 141 EEAGCAAVMPLGAPIG-SG--LGLLNPYNLRIIIEQA--DVPVIVDAGIGTPSDAAQAMELGADAVLLNTAIAV 209 (250)
T ss_pred HHcCCCEeCCCCcCCC-CC--CCCCCHHHHHHHHHhc--CCeEEEeCCCCCHHHHHHHHHcCCCEEEEChHhhC
Confidence 899999995411 12 11 2455567788887765 79999999999999999999999999999998864
|
|
| >PRK02083 imidazole glycerol phosphate synthase subunit HisF; Provisional | Back alignment and domain information |
|---|
Probab=98.09 E-value=1.7e-05 Score=74.60 Aligned_cols=70 Identities=17% Similarity=0.236 Sum_probs=56.4
Q ss_pred HHcCCcEEEEcCCCccCCCCCcchHHHHHHHHHHcCCCceEEEecCCCCHHHHHHHHHh-CcCEEEecHHHHHH
Q 017781 239 VQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALAL-GASGIFIGRPVVYS 311 (366)
Q Consensus 239 ~~aGad~I~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~i~vi~~GGI~~~~dv~kalal-GAd~V~igr~~l~~ 311 (366)
.+.|++.++++.+.......++ .++.+.++.+.+ ++|||++|||++.+|+.+++.. ||++|++|+.|.++
T Consensus 163 ~~~g~~~ii~~~i~~~g~~~g~-d~~~i~~~~~~~--~ipvia~GGv~s~~d~~~~~~~~G~~gvivg~al~~~ 233 (253)
T PRK02083 163 EELGAGEILLTSMDRDGTKNGY-DLELTRAVSDAV--NVPVIASGGAGNLEHFVEAFTEGGADAALAASIFHFG 233 (253)
T ss_pred HHcCCCEEEEcCCcCCCCCCCc-CHHHHHHHHhhC--CCCEEEECCCCCHHHHHHHHHhCCccEEeEhHHHHcC
Confidence 6789999998764321111233 688889988877 7999999999999999999975 99999999998764
|
|
| >KOG2334 consensus tRNA-dihydrouridine synthase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=98.08 E-value=4.5e-05 Score=74.96 Aligned_cols=202 Identities=20% Similarity=0.228 Sum_probs=131.4
Q ss_pred cccCCceEecccccccccCChhhHHHHHHHHHcCCceecCCCCC--CCHHHHh---------------------ccCC--
Q 017781 68 FKISMPIMIAPTAMQKMAHPEGEYATARAASAAGTIMTLSSWST--SSVEEVA---------------------STGP-- 122 (366)
Q Consensus 68 ~~l~~Pi~iApm~~~~l~~~~~e~~la~aa~~~G~~~~vs~~~~--~~~e~i~---------------------~~~~-- 122 (366)
..+.+-+++|||- . -|+.++...|-++|.-++-+...- .-++-+. ...|
T Consensus 7 l~y~nk~iLApMv--r----~G~lpmrLLal~~Gadlv~~peIVdkKLIe~ir~~NealgtIDfv~p~~~~vvfr~~~~e 80 (477)
T KOG2334|consen 7 LFYRNKLILAPMV--R----AGELPMRLLALQYGADLVYTPEIVDKKLIECIRVENEALGTIDFVDPSDSTVVFRTCPAE 80 (477)
T ss_pred hhhcCcEeeehHH--H----hccchHHHHHHHhccceecChhhhhHHHHhccccccccccceeeecCCcceEEEEechhh
Confidence 3456778999993 1 258889999999999888654210 0111110 0011
Q ss_pred -CceEEEeeecCCHHHHHHHHHHHHHcCCCEEEEecCCCCCcchhHHHhhhcCCCCccccccccccccCCCccccchhhH
Q 017781 123 -GIRFFQLYVYKDRNVVAQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLTLKNFQGLDLGKMDEANDSGLA 201 (366)
Q Consensus 123 -~~~~~Qly~~~d~~~~~~~l~ra~~~G~~ai~vtvd~p~~g~r~~d~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~ 201 (366)
....||+- -.+.+...+..+. .......+.+++.||-. |..-.++ +
T Consensus 81 ~~rlilQ~g-T~sa~lA~e~A~l-v~nDvsgidiN~gCpK~----------fSi~~gm---------------------g 127 (477)
T KOG2334|consen 81 NSRLILQIG-TASAELALEAAKL-VDNDVSGIDINMGCPKE----------FSIHGGM---------------------G 127 (477)
T ss_pred cCeEEEEec-CCcHHHHHHHHHH-hhcccccccccCCCCCc----------cccccCC---------------------C
Confidence 24567764 3455554433332 23456678899999842 2211111 1
Q ss_pred HHhhhccCCCCCHHHHHHHHHhcCCCEEEEec--cCHHH--------HHcCCcEEEEcCCCccCCCCCcchHHHHHHHHH
Q 017781 202 AYVAGQIDRSLSWKDVKWLQTITKLPILVKGV--LTAED--------VQAGAAGIIVSNHGARQLDYVPATIMALEEVVK 271 (366)
Q Consensus 202 ~~~~~~~d~~~~~~~i~~lr~~~~~pv~vK~v--~~~~d--------~~aGad~I~vs~~gg~~~~~~~~~~~~l~~i~~ 271 (366)
..+. .+++....++..+.+..++|+..|.. .+.+| ...|+.+|.|+.+..-.-..-+.+.+.+.+++.
T Consensus 128 aalL--t~~dkl~~IL~sLvk~~~vpvtckIR~L~s~edtL~lv~ri~~tgi~ai~vh~rt~d~r~~~~~~~~~i~~i~~ 205 (477)
T KOG2334|consen 128 AALL--TDPDKLVAILYSLVKGNKVPVTCKIRLLDSKEDTLKLVKRICATGIAAITVHCRTRDERNQEPATKDYIREIAQ 205 (477)
T ss_pred chhh--cCHHHHHHHHHHHHhcCcccceeEEEecCCcccHHHHHHHHHhcCCceEEEEeeccccCCCCCCCHHHHHHHHH
Confidence 1111 24555567889999989999999987 35555 788999999876431111234667888999998
Q ss_pred HcCCCceEEEecCCCC---HHHHHHHHH-hCcCEEEecHHHHHH
Q 017781 272 ATQGRIPVFLDGGVRR---GTDVFKALA-LGASGIFIGRPVVYS 311 (366)
Q Consensus 272 ~~~~~i~vi~~GGI~~---~~dv~kala-lGAd~V~igr~~l~~ 311 (366)
.++ .+|||+.||.++ ..|+.+.-. .|++.||+.|...+.
T Consensus 206 ~~~-~V~vi~ng~~~~~e~y~Di~~~~~~~~~~~vmiAR~A~~n 248 (477)
T KOG2334|consen 206 ACQ-MVPVIVNGGSMDIEQYSDIEDFQEKTGADSVMIARAAESN 248 (477)
T ss_pred Hhc-cceEeeccchhhHHhhhhHHHHHHHhccchhhhhHhhhcC
Confidence 884 399999999999 899998887 799999999976554
|
|
| >cd00959 DeoC 2-deoxyribose-5-phosphate aldolase (DERA) of the DeoC family | Back alignment and domain information |
|---|
Probab=98.06 E-value=9e-05 Score=67.48 Aligned_cols=87 Identities=26% Similarity=0.301 Sum_probs=60.1
Q ss_pred CHHHHHHHHHhcCCCEEEEec-----cCHHH--------HHcCCcEEEEcCCCccCCCCCcchHHHHHHHHHHcCCCceE
Q 017781 213 SWKDVKWLQTITKLPILVKGV-----LTAED--------VQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPV 279 (366)
Q Consensus 213 ~~~~i~~lr~~~~~pv~vK~v-----~~~~d--------~~aGad~I~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~i~v 279 (366)
.++++.++++..+ ++.+|.+ ++.+. .++|+|+|..+. |.. ....+.+.+..+++.++.++||
T Consensus 103 ~~~ei~~v~~~~~-g~~lkvI~e~~~l~~~~i~~a~ria~e~GaD~IKTsT-G~~---~~~at~~~v~~~~~~~~~~v~i 177 (203)
T cd00959 103 VYEEIAAVVEACG-GAPLKVILETGLLTDEEIIKACEIAIEAGADFIKTST-GFG---PGGATVEDVKLMKEAVGGRVGV 177 (203)
T ss_pred HHHHHHHHHHhcC-CCeEEEEEecCCCCHHHHHHHHHHHHHhCCCEEEcCC-CCC---CCCCCHHHHHHHHHHhCCCceE
Confidence 4567788887764 3334433 34333 999999999873 211 1224555554555555558999
Q ss_pred EEecCCCCHHHHHHHHHhCcCEEEe
Q 017781 280 FLDGGVRRGTDVFKALALGASGIFI 304 (366)
Q Consensus 280 i~~GGI~~~~dv~kalalGAd~V~i 304 (366)
-++|||++.+++++.+.+||+-++.
T Consensus 178 k~aGGikt~~~~l~~~~~g~~riG~ 202 (203)
T cd00959 178 KAAGGIRTLEDALAMIEAGATRIGT 202 (203)
T ss_pred EEeCCCCCHHHHHHHHHhChhhccC
Confidence 9999999999999999999987653
|
DERA belongs to the class I aldolases and catalyzes a reversible aldol reaction between acetaldehyde and glyceraldehyde 3-phosphate to generate 2-deoxyribose 5-phosphate. DERA is unique in catalyzing the aldol reaction between two aldehydes, and its broad substrate specificity confers considerable utility as a biocatalyst, offering an environmentally benign alternative to chiral transition metal catalysis of the asymmetric aldol reaction. |
| >TIGR03572 WbuZ glycosyl amidation-associated protein WbuZ | Back alignment and domain information |
|---|
Probab=98.06 E-value=1.4e-05 Score=74.12 Aligned_cols=68 Identities=25% Similarity=0.250 Sum_probs=54.7
Q ss_pred HHcCCcEEEEcCCCccCCCCCcchHHHHHHHHHHcCCCceEEEecCCCCHHHHHH-HHHhCcCEEEecHHHH
Q 017781 239 VQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFK-ALALGASGIFIGRPVV 309 (366)
Q Consensus 239 ~~aGad~I~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~i~vi~~GGI~~~~dv~k-alalGAd~V~igr~~l 309 (366)
.++|+|.|++++........+ +.++.+.++++.+ ++||+++|||++.+|+.+ ....|||+|++|++|-
T Consensus 163 ~~~G~d~i~i~~i~~~g~~~g-~~~~~~~~i~~~~--~ipvia~GGi~s~~di~~~l~~~gadgV~vg~a~h 231 (232)
T TIGR03572 163 EQLGAGEILLNSIDRDGTMKG-YDLELIKTVSDAV--SIPVIALGGAGSLDDLVEVALEAGASAVAAASLFH 231 (232)
T ss_pred HHcCCCEEEEeCCCccCCcCC-CCHHHHHHHHhhC--CCCEEEECCCCCHHHHHHHHHHcCCCEEEEehhhh
Confidence 688999999987432212223 3688899998877 799999999999999999 5558999999999874
|
This clade of sequences is highly similar to the HisF protein, but generally represents the second HisF homolog in the genome where the other is an authentic HisF observed in the context of a complete histidine biosynthesis operon. The similarity between these WbuZ sequences and true HisFs is such that often the closest match by BLAST of a WbuZ is a HisF. Only by making a multiple sequence alignment is the homology relationship among the WbuZ sequences made apparent. WbuZ genes are invariably observed in the presence of a homolog of the HisH protein (designated WbuY) and a proposed N-acetyl sugar amidotransferase designated in WbuX in E. coli, IfnA in P. aeriginosa and PseA in C. jejuni. Similarly, this trio of genes is invariably found in the context of saccharide biosynthesis loci. It has been shown that the WbuYZ homologs are not essential components of the activity expressed by WbuX, leading to the proposal that these to pr |
| >TIGR01182 eda Entner-Doudoroff aldolase | Back alignment and domain information |
|---|
Probab=98.05 E-value=7.6e-05 Score=67.95 Aligned_cols=168 Identities=14% Similarity=0.120 Sum_probs=108.2
Q ss_pred EEEeeecCCHHHHHHHHHHHHHcCCCEEEEecCCCCCcchhHHHhhhcCCCCccccccccccccCCCccccchhhHHHhh
Q 017781 126 FFQLYVYKDRNVVAQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLTLKNFQGLDLGKMDEANDSGLAAYVA 205 (366)
Q Consensus 126 ~~Qly~~~d~~~~~~~l~ra~~~G~~ai~vtvd~p~~g~r~~d~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 205 (366)
.+-+....+.+...++++.+.+.|++.+.||+++|..-.-.+.++..+ |. +.+- ..........+.......+++.
T Consensus 10 liaVlr~~~~e~a~~~~~al~~~Gi~~iEit~~t~~a~~~i~~l~~~~--~~-~~vG-AGTVl~~~~a~~a~~aGA~Fiv 85 (204)
T TIGR01182 10 IVPVIRIDDVDDALPLAKALIEGGLRVLEVTLRTPVALDAIRLLRKEV--PD-ALIG-AGTVLNPEQLRQAVDAGAQFIV 85 (204)
T ss_pred EEEEEecCCHHHHHHHHHHHHHcCCCEEEEeCCCccHHHHHHHHHHHC--CC-CEEE-EEeCCCHHHHHHHHHcCCCEEE
Confidence 455566778888889999999999999999999987555455665554 21 1110 0000000000000001111222
Q ss_pred hccCCCCCHHHHHHHHHhcCCCEEEEeccCHHH----HHcCCcEEEEcCCCccCCCCCcchHHHHHHHHHHcCCCceEEE
Q 017781 206 GQIDRSLSWKDVKWLQTITKLPILVKGVLTAED----VQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFL 281 (366)
Q Consensus 206 ~~~d~~~~~~~i~~lr~~~~~pv~vK~v~~~~d----~~aGad~I~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~i~vi~ 281 (366)
.|.++.+.+++.++ .++|++- |++|+.| .++|+|.|.+.-.+ .-+|+..+. .++.-+ .+++++.
T Consensus 86 ---sP~~~~~v~~~~~~-~~i~~iP-G~~TptEi~~A~~~Ga~~vKlFPA~---~~GG~~yik---al~~pl-p~i~~~p 153 (204)
T TIGR01182 86 ---SPGLTPELAKHAQD-HGIPIIP-GVATPSEIMLALELGITALKLFPAE---VSGGVKMLK---ALAGPF-PQVRFCP 153 (204)
T ss_pred ---CCCCCHHHHHHHHH-cCCcEEC-CCCCHHHHHHHHHCCCCEEEECCch---hcCCHHHHH---HHhccC-CCCcEEe
Confidence 35566677777665 4887655 8889988 99999999987532 112344433 333334 3799999
Q ss_pred ecCCCCHHHHHHHHHhCcCEEEecHHHHH
Q 017781 282 DGGVRRGTDVFKALALGASGIFIGRPVVY 310 (366)
Q Consensus 282 ~GGI~~~~dv~kalalGAd~V~igr~~l~ 310 (366)
+|||.- +++...|++||.+|++|+.+..
T Consensus 154 tGGV~~-~N~~~~l~aGa~~vg~Gs~L~~ 181 (204)
T TIGR01182 154 TGGINL-ANVRDYLAAPNVACGGGSWLVP 181 (204)
T ss_pred cCCCCH-HHHHHHHhCCCEEEEEChhhcC
Confidence 999954 8999999999999999998763
|
2-deydro-3-deoxyphosphogluconate aldolase (EC 4.1.2.14) is an enzyme of the Entner-Doudoroff pathway. This aldolase has another function, 4-hydroxy-2-oxoglutarate aldolase (EC 4.1.3.16) shown experimentally in Escherichia coli and Pseudomonas putida |
| >COG0159 TrpA Tryptophan synthase alpha chain [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.03 E-value=0.00079 Score=63.34 Aligned_cols=150 Identities=20% Similarity=0.294 Sum_probs=94.0
Q ss_pred CCHHHHHHHHHHHHHcCCCEEEEecCCCCCcchhHHHhhhcCCC--CccccccccccccCCCccccchhhHHHhhhccCC
Q 017781 133 KDRNVVAQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFTLP--PFLTLKNFQGLDLGKMDEANDSGLAAYVAGQIDR 210 (366)
Q Consensus 133 ~d~~~~~~~l~ra~~~G~~ai~vtvd~p~~g~r~~d~~~~~~~p--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~ 210 (366)
.+.+.+.+.++.+.+.|+++|-+.+ |.. =| .|.+. . .+....+......
T Consensus 28 P~~e~s~e~i~~L~~~GaD~iELGv--PfS------------DPvADGP~I-----------q----~A~~rAL~~g~t~ 78 (265)
T COG0159 28 PDLETSLEIIKTLVEAGADILELGV--PFS------------DPVADGPTI-----------Q----AAHLRALAAGVTL 78 (265)
T ss_pred CCHHHHHHHHHHHHhCCCCEEEecC--CCC------------CcCccCHHH-----------H----HHHHHHHHCCCCH
Confidence 4678899999999999999998754 321 01 01110 0 0111222221222
Q ss_pred CCCHHHHHHHHHh-cCCCEEEEeccCH------HH-----HHcCCcEEEEcC---------------CCcc--------C
Q 017781 211 SLSWKDVKWLQTI-TKLPILVKGVLTA------ED-----VQAGAAGIIVSN---------------HGAR--------Q 255 (366)
Q Consensus 211 ~~~~~~i~~lr~~-~~~pv~vK~v~~~------~d-----~~aGad~I~vs~---------------~gg~--------~ 255 (366)
...++.++.+|+. .++|+++=.-.++ +. .++|+|++.+-- ||=. .
T Consensus 79 ~~~lel~~~~r~~~~~~Pivlm~Y~Npi~~~Gie~F~~~~~~~GvdGlivpDLP~ee~~~~~~~~~~~gi~~I~lvaPtt 158 (265)
T COG0159 79 EDTLELVEEIRAKGVKVPIVLMTYYNPIFNYGIEKFLRRAKEAGVDGLLVPDLPPEESDELLKAAEKHGIDPIFLVAPTT 158 (265)
T ss_pred HHHHHHHHHHHhcCCCCCEEEEEeccHHHHhhHHHHHHHHHHcCCCEEEeCCCChHHHHHHHHHHHHcCCcEEEEeCCCC
Confidence 3357788899865 5789887654333 22 788888888732 1100 0
Q ss_pred -----------------------CCCCc-----chHHHHHHHHHHcCCCceEEEecCCCCHHHHHHHHHhCcCEEEecHH
Q 017781 256 -----------------------LDYVP-----ATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFIGRP 307 (366)
Q Consensus 256 -----------------------~~~~~-----~~~~~l~~i~~~~~~~i~vi~~GGI~~~~dv~kalalGAd~V~igr~ 307 (366)
..+.. ...+.+..+++.. ++||.+-=||++++++.+.... ||+|.+|++
T Consensus 159 ~~~rl~~i~~~a~GFiY~vs~~GvTG~~~~~~~~~~~~v~~vr~~~--~~Pv~vGFGIs~~e~~~~v~~~-ADGVIVGSA 235 (265)
T COG0159 159 PDERLKKIAEAASGFIYYVSRMGVTGARNPVSADVKELVKRVRKYT--DVPVLVGFGISSPEQAAQVAEA-ADGVIVGSA 235 (265)
T ss_pred CHHHHHHHHHhCCCcEEEEecccccCCCcccchhHHHHHHHHHHhc--CCCeEEecCcCCHHHHHHHHHh-CCeEEEcHH
Confidence 00111 1234555555555 8999997799999999999999 999999999
Q ss_pred HHHHhhh
Q 017781 308 VVYSLAA 314 (366)
Q Consensus 308 ~l~~l~~ 314 (366)
++..+..
T Consensus 236 iV~~i~~ 242 (265)
T COG0159 236 IVKIIEE 242 (265)
T ss_pred HHHHHHh
Confidence 9886543
|
|
| >cd00945 Aldolase_Class_I Class I aldolases | Back alignment and domain information |
|---|
Probab=98.01 E-value=0.0005 Score=61.23 Aligned_cols=168 Identities=20% Similarity=0.103 Sum_probs=108.5
Q ss_pred hhHHHHHHHHHcCCceecCCCCCCCHHHHhccCC---CceEEEeeecC---CHHHHHHHHHHHHHcCCCEEEEecCCCCC
Q 017781 89 GEYATARAASAAGTIMTLSSWSTSSVEEVASTGP---GIRFFQLYVYK---DRNVVAQLVRRAERAGFKAIALTVDTPRL 162 (366)
Q Consensus 89 ~e~~la~aa~~~G~~~~vs~~~~~~~e~i~~~~~---~~~~~Qly~~~---d~~~~~~~l~ra~~~G~~ai~vtvd~p~~ 162 (366)
.-..+++.+.+.|+...+-.. ..++.+.+..+ .+.+.++..+. ..+...+.+++++++|++++.+.... .
T Consensus 14 ~~~~~~~~~~~~gv~gi~~~g--~~i~~~~~~~~~~~~~v~~~v~~~~~~~~~~~~~~~a~~a~~~Gad~i~v~~~~--~ 89 (201)
T cd00945 14 DIAKLCDEAIEYGFAAVCVNP--GYVRLAADALAGSDVPVIVVVGFPTGLTTTEVKVAEVEEAIDLGADEIDVVINI--G 89 (201)
T ss_pred HHHHHHHHHHHhCCcEEEECH--HHHHHHHHHhCCCCCeEEEEecCCCCCCcHHHHHHHHHHHHHcCCCEEEEeccH--H
Confidence 345788888888887654332 22344433322 24455554221 14667778899999999999875321 0
Q ss_pred cchhHHHhhhcCCCCccccccccccccCCCccccchhhHHHhhhccCCCCCHHHHHHHHHh--cCCCEEEEecc----CH
Q 017781 163 GRREADIKNRFTLPPFLTLKNFQGLDLGKMDEANDSGLAAYVAGQIDRSLSWKDVKWLQTI--TKLPILVKGVL----TA 236 (366)
Q Consensus 163 g~r~~d~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~i~~lr~~--~~~pv~vK~v~----~~ 236 (366)
+. | ..+.....+.++.+++. .++|++++... +.
T Consensus 90 ----------~~-~------------------------------~~~~~~~~~~~~~i~~~~~~~~pv~iy~~p~~~~~~ 128 (201)
T cd00945 90 ----------SL-K------------------------------EGDWEEVLEEIAAVVEAADGGLPLKVILETRGLKTA 128 (201)
T ss_pred ----------HH-h------------------------------CCCHHHHHHHHHHHHHHhcCCceEEEEEECCCCCCH
Confidence 00 0 00012234567777777 48999999863 44
Q ss_pred HH--------HHcCCcEEEEcCCCccCCCCCcchHHHHHHHHHHcCCCceEEEecCCCCHHHHHHHHHhCcCEEEec
Q 017781 237 ED--------VQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFIG 305 (366)
Q Consensus 237 ~d--------~~aGad~I~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~i~vi~~GGI~~~~dv~kalalGAd~V~ig 305 (366)
+. .+.|+|+|..+.... .+...+..+.++++..+.++++++.||+.+.+++..++.+||+++.+|
T Consensus 129 ~~~~~~~~~~~~~g~~~iK~~~~~~----~~~~~~~~~~~i~~~~~~~~~v~~~gg~~~~~~~~~~~~~Ga~g~~~g 201 (201)
T cd00945 129 DEIAKAARIAAEAGADFIKTSTGFG----GGGATVEDVKLMKEAVGGRVGVKAAGGIKTLEDALAAIEAGADGIGTS 201 (201)
T ss_pred HHHHHHHHHHHHhCCCEEEeCCCCC----CCCCCHHHHHHHHHhcccCCcEEEECCCCCHHHHHHHHHhccceeecC
Confidence 43 468999998765211 122355667777766654689999999999999999999999999875
|
The class I aldolases use an active-site lysine which stablilzes a reaction intermediates via Schiff base formation, and have TIM beta/alpha barrel fold. The members of this family include 2-keto-3-deoxy-6-phosphogluconate (KDPG) and 2-keto-4-hydroxyglutarate (KHG) aldolases, transaldolase, dihydrodipicolinate synthase sub-family, Type I 3-dehydroquinate dehydratase, DeoC and DhnA proteins, and metal-independent fructose-1,6-bisphosphate aldolase. Although structurally similar, the class II aldolases use a different mechanism and are believed to have an independent evolutionary origin. |
| >PRK07114 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional | Back alignment and domain information |
|---|
Probab=98.01 E-value=0.00018 Score=66.40 Aligned_cols=169 Identities=13% Similarity=0.141 Sum_probs=108.0
Q ss_pred EEEeeecCCHHHHHHHHHHHHHcCCCEEEEecCCCCCcchhHHHhhhcC--CCCccccccccccccCCCccccchhhHHH
Q 017781 126 FFQLYVYKDRNVVAQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFT--LPPFLTLKNFQGLDLGKMDEANDSGLAAY 203 (366)
Q Consensus 126 ~~Qly~~~d~~~~~~~l~ra~~~G~~ai~vtvd~p~~g~r~~d~~~~~~--~p~~~~~~~~~~~~~~~~~~~~~~~~~~~ 203 (366)
.+-+....+.+...++++.+.+.|++.+-||.++|..-...+.++..+. .|. +.+. ..........+.......++
T Consensus 17 vi~Vvr~~~~~~a~~~~~al~~gGi~~iEiT~~tp~a~~~i~~l~~~~~~~~p~-~~vG-aGTVl~~e~a~~a~~aGA~F 94 (222)
T PRK07114 17 MVPVFYHADVEVAKKVIKACYDGGARVFEFTNRGDFAHEVFAELVKYAAKELPG-MILG-VGSIVDAATAALYIQLGANF 94 (222)
T ss_pred EEEEEEcCCHHHHHHHHHHHHHCCCCEEEEeCCCCcHHHHHHHHHHHHHhhCCC-eEEe-eEeCcCHHHHHHHHHcCCCE
Confidence 4455667889999999999999999999999999876555555553331 221 1100 00000000000000111112
Q ss_pred hhhccCCCCCHHHHHHHHHhcCCCEEEEeccCHHH----HHcCCcEEEEcCCCccCCCCCcchHHHHHHHHHHcCCCceE
Q 017781 204 VAGQIDRSLSWKDVKWLQTITKLPILVKGVLTAED----VQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPV 279 (366)
Q Consensus 204 ~~~~~d~~~~~~~i~~lr~~~~~pv~vK~v~~~~d----~~aGad~I~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~i~v 279 (366)
+. .|.++-+.++..++. ++| ++=|++|+.| .++|+|.|.+.-.+ ..|+.. ++.+..-+ .++++
T Consensus 95 iV---sP~~~~~v~~~~~~~-~i~-~iPG~~TpsEi~~A~~~Ga~~vKlFPA~----~~G~~~---ikal~~p~-p~i~~ 161 (222)
T PRK07114 95 IV---TPLFNPDIAKVCNRR-KVP-YSPGCGSLSEIGYAEELGCEIVKLFPGS----VYGPGF---VKAIKGPM-PWTKI 161 (222)
T ss_pred EE---CCCCCHHHHHHHHHc-CCC-EeCCCCCHHHHHHHHHCCCCEEEECccc----ccCHHH---HHHHhccC-CCCeE
Confidence 22 355667778877764 776 4457888887 99999999987532 123333 33333333 37999
Q ss_pred EEecCCCC-HHHHHHHHHhCcCEEEecHHHH
Q 017781 280 FLDGGVRR-GTDVFKALALGASGIFIGRPVV 309 (366)
Q Consensus 280 i~~GGI~~-~~dv~kalalGAd~V~igr~~l 309 (366)
+.+|||.- .+++...+.+||.+|++|+.+.
T Consensus 162 ~ptGGV~~~~~n~~~yl~aGa~avg~Gs~L~ 192 (222)
T PRK07114 162 MPTGGVEPTEENLKKWFGAGVTCVGMGSKLI 192 (222)
T ss_pred EeCCCCCcchhcHHHHHhCCCEEEEEChhhc
Confidence 99999985 5899999999999999999875
|
|
| >PF00218 IGPS: Indole-3-glycerol phosphate synthase; InterPro: IPR013798 Indole-3-glycerol phosphate synthase (4 | Back alignment and domain information |
|---|
Probab=98.00 E-value=0.00011 Score=69.09 Aligned_cols=164 Identities=25% Similarity=0.335 Sum_probs=88.3
Q ss_pred HHHHHHHHHcCCCEEEEecCCCCCcchhHHHhh---hcCCCCccccccccccccCCCccccchhhHHHhhhccCCCCCHH
Q 017781 139 AQLVRRAERAGFKAIALTVDTPRLGRREADIKN---RFTLPPFLTLKNFQGLDLGKMDEANDSGLAAYVAGQIDRSLSWK 215 (366)
Q Consensus 139 ~~~l~ra~~~G~~ai~vtvd~p~~g~r~~d~~~---~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~ 215 (366)
.++.+.-++.|+.+|-|-.|....+....|++. .+.+|. -.+.+- +....+.+....|+...+. ...-++.+
T Consensus 71 ~~~a~~y~~~GA~aiSVlTe~~~F~Gs~~dL~~v~~~~~~Pv--L~KDFI-id~~QI~eA~~~GADaVLL--I~~~L~~~ 145 (254)
T PF00218_consen 71 AEIAKAYEEAGAAAISVLTEPKFFGGSLEDLRAVRKAVDLPV--LRKDFI-IDPYQIYEARAAGADAVLL--IAAILSDD 145 (254)
T ss_dssp HHHHHHHHHTT-SEEEEE--SCCCHHHHHHHHHHHHHSSS-E--EEES----SHHHHHHHHHTT-SEEEE--EGGGSGHH
T ss_pred HHHHHHHHhcCCCEEEEECCCCCCCCCHHHHHHHHHHhCCCc--ccccCC-CCHHHHHHHHHcCCCEeeh--hHHhCCHH
Confidence 445666778999999998888877766666553 233331 111110 0000000000001000000 01122333
Q ss_pred HHHHHHHh---cCCCEEEEeccCHHH----HHcCCcEEEEcCCCccCCCCCcchHHHHHHHHHHcCCCceEEEecCCCCH
Q 017781 216 DVKWLQTI---TKLPILVKGVLTAED----VQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRG 288 (366)
Q Consensus 216 ~i~~lr~~---~~~pv~vK~v~~~~d----~~aGad~I~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~i~vi~~GGI~~~ 288 (366)
.++++-+. .++-.+| .+.+.++ .++|++.|-|.|+. +..-...+....++...++.++.+|+.+||.+.
T Consensus 146 ~l~~l~~~a~~lGle~lV-EVh~~~El~~al~~~a~iiGINnRd---L~tf~vd~~~~~~l~~~ip~~~~~iseSGI~~~ 221 (254)
T PF00218_consen 146 QLEELLELAHSLGLEALV-EVHNEEELERALEAGADIIGINNRD---LKTFEVDLNRTEELAPLIPKDVIVISESGIKTP 221 (254)
T ss_dssp HHHHHHHHHHHTT-EEEE-EESSHHHHHHHHHTT-SEEEEESBC---TTTCCBHTHHHHHHHCHSHTTSEEEEESS-SSH
T ss_pred HHHHHHHHHHHcCCCeEE-EECCHHHHHHHHHcCCCEEEEeCcc---ccCcccChHHHHHHHhhCccceeEEeecCCCCH
Confidence 33444333 3554443 4556666 78889888887753 222223344445666666667899999999999
Q ss_pred HHHHHHHHhCcCEEEecHHHHHH
Q 017781 289 TDVFKALALGASGIFIGRPVVYS 311 (366)
Q Consensus 289 ~dv~kalalGAd~V~igr~~l~~ 311 (366)
+|+.+...+|+|+|.||+.+|.+
T Consensus 222 ~d~~~l~~~G~davLVGe~lm~~ 244 (254)
T PF00218_consen 222 EDARRLARAGADAVLVGEALMRS 244 (254)
T ss_dssp HHHHHHCTTT-SEEEESHHHHTS
T ss_pred HHHHHHHHCCCCEEEECHHHhCC
Confidence 99999999999999999999864
|
1.1.48 from EC) (IGPS) catalyses the fourth step in the biosynthesis of tryptophan, the ring closure of 1-(2-carboxy-phenylamino)-1-deoxyribulose into indol-3-glycerol-phosphate. In some bacteria, IGPS is a single chain enzyme. In others, such as Escherichia coli, it is the N-terminal domain of a bifunctional enzyme that also catalyses N-(5'-phosphoribosyl)anthranilate isomerase (5.3.1.24 from EC) (PRAI) activity (see IPR001240 from INTERPRO), the third step of tryptophan biosynthesis. In fungi, IGPS is the central domain of a trifunctional enzyme that contains a PRAI C-terminal domain and a glutamine amidotransferase (2.4.2 from EC) (GATase) N-terminal domain (see IPR000991 from INTERPRO). A structure of the IGPS domain of the bifunctional enzyme from the mesophilic bacterium E. coli (eIGPS) has been compared with the monomeric indole-3-glycerol phosphate synthase from the hyperthermophilic archaeon Sulfolobus solfataricus (sIGPS). Both are single-domain (beta/alpha)8 barrel proteins, with one (eIGPS) or two (sIGPS) additional helices inserted before the first beta strand []. ; GO: 0004425 indole-3-glycerol-phosphate synthase activity; PDB: 1VC4_A 1PII_A 1JCM_P 1I4N_B 1J5T_A 3TSM_B 4FB7_A 3QJA_A 1JUL_A 2C3Z_A .... |
| >TIGR00735 hisF imidazoleglycerol phosphate synthase, cyclase subunit | Back alignment and domain information |
|---|
Probab=97.99 E-value=2.5e-05 Score=73.54 Aligned_cols=70 Identities=20% Similarity=0.321 Sum_probs=56.4
Q ss_pred HHcCCcEEEEcCCCccCCCCCcchHHHHHHHHHHcCCCceEEEecCCCCHHHHHHHHHhC-cCEEEecHHHHHH
Q 017781 239 VQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALG-ASGIFIGRPVVYS 311 (366)
Q Consensus 239 ~~aGad~I~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~i~vi~~GGI~~~~dv~kalalG-Ad~V~igr~~l~~ 311 (366)
.++|+|.|.++.... ......+.++.+.++++.+ ++|||++|||++.+|+.+++..| ||+|++|+.+..+
T Consensus 165 ~~~G~~~iivt~i~~-~g~~~g~~~~~~~~i~~~~--~ipvia~GGi~s~~di~~~~~~g~~dgv~~g~a~~~~ 235 (254)
T TIGR00735 165 EKLGAGEILLTSMDK-DGTKSGYDLELTKAVSEAV--KIPVIASGGAGKPEHFYEAFTKGKADAALAASVFHYR 235 (254)
T ss_pred HHcCCCEEEEeCcCc-ccCCCCCCHHHHHHHHHhC--CCCEEEeCCCCCHHHHHHHHHcCCcceeeEhHHHhCC
Confidence 678999999865321 1112335678888888877 79999999999999999999988 9999999998653
|
|
| >COG0107 HisF Imidazoleglycerol-phosphate synthase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=97.97 E-value=8.1e-05 Score=67.98 Aligned_cols=181 Identities=19% Similarity=0.269 Sum_probs=113.8
Q ss_pred HHHHHHHHcCCceecCCCCCCCHHHHhcc---CCCceEEEeeecCCHHHHHHHHHHHHHcCCCEEEEecCCCCCcchhHH
Q 017781 92 ATARAASAAGTIMTLSSWSTSSVEEVAST---GPGIRFFQLYVYKDRNVVAQLVRRAERAGFKAIALTVDTPRLGRREAD 168 (366)
Q Consensus 92 ~la~aa~~~G~~~~vs~~~~~~~e~i~~~---~~~~~~~Qly~~~d~~~~~~~l~ra~~~G~~ai~vtvd~p~~g~r~~d 168 (366)
-+.+.|++.-+|++++.. -.++|++.+. ......++----.+++.+.+ .++..|..++++.+|+... .
T Consensus 65 vv~r~A~~vfiPltVGGG-I~s~eD~~~ll~aGADKVSINsaAv~~p~lI~~---~a~~FGsQciVvaIDakr~----~- 135 (256)
T COG0107 65 VVERVAEQVFIPLTVGGG-IRSVEDARKLLRAGADKVSINSAAVKDPELITE---AADRFGSQCIVVAIDAKRV----P- 135 (256)
T ss_pred HHHHHHhhceeeeEecCC-cCCHHHHHHHHHcCCCeeeeChhHhcChHHHHH---HHHHhCCceEEEEEEeeec----c-
Confidence 467888889999999865 3567766542 11222333222346664433 3456899999999997421 0
Q ss_pred HhhhcCCCCccccccccccccCCCccccchhhHHHhhhccCCCCCHHHHHHHHHhcCCCEEEEeccCHHHHHcCCcEEEE
Q 017781 169 IKNRFTLPPFLTLKNFQGLDLGKMDEANDSGLAAYVAGQIDRSLSWKDVKWLQTITKLPILVKGVLTAEDVQAGAAGIIV 248 (366)
Q Consensus 169 ~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~i~~lr~~~~~pv~vK~v~~~~d~~aGad~I~v 248 (366)
.+ .+..... ....+..+..|+.++|.++. ++.||--|.+
T Consensus 136 --~g--~~~~~~v----------------------~~~gGr~~t~~d~~~Wa~~~---------------e~~GAGEIlL 174 (256)
T COG0107 136 --DG--ENGWYEV----------------------FTHGGREDTGLDAVEWAKEV---------------EELGAGEILL 174 (256)
T ss_pred --CC--CCCcEEE----------------------EecCCCcCCCcCHHHHHHHH---------------HHcCCceEEE
Confidence 00 0000000 00012344578889998886 3456655655
Q ss_pred cC--CCccCCCCCcchHHHHHHHHHHcCCCceEEEecCCCCHHHHHHHHHhC-cCEEEecHHHHHHhhhcCHHHHHHHHH
Q 017781 249 SN--HGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALG-ASGIFIGRPVVYSLAAEGEKGVRRVLE 325 (366)
Q Consensus 249 s~--~gg~~~~~~~~~~~~l~~i~~~~~~~i~vi~~GGI~~~~dv~kalalG-Ad~V~igr~~l~~l~~~G~~gv~~~~~ 325 (366)
.. +-|.+ .| =.++.+..+++.+ ++|||+|||..+.+|...++..| ||++..++-|-|. +
T Consensus 175 tsmD~DGtk--~G-yDl~l~~~v~~~v--~iPvIASGGaG~~ehf~eaf~~~~adAaLAAsiFH~~-----~-------- 236 (256)
T COG0107 175 TSMDRDGTK--AG-YDLELTRAVREAV--NIPVIASGGAGKPEHFVEAFTEGKADAALAASIFHFG-----E-------- 236 (256)
T ss_pred eeecccccc--cC-cCHHHHHHHHHhC--CCCEEecCCCCcHHHHHHHHHhcCccHHHhhhhhhcC-----c--------
Confidence 32 11221 11 1567888888888 89999999999999999999988 9999988888764 1
Q ss_pred HHHHHHHHHHHHcCC
Q 017781 326 MLREEFELAMALSGC 340 (366)
Q Consensus 326 ~l~~el~~~m~~~G~ 340 (366)
.-..|++..|...|.
T Consensus 237 ~~i~evK~yL~~~gi 251 (256)
T COG0107 237 ITIGEVKEYLAEQGI 251 (256)
T ss_pred ccHHHHHHHHHHcCC
Confidence 233666777766664
|
|
| >cd04731 HisF The cyclase subunit of imidazoleglycerol phosphate synthase (HisF) | Back alignment and domain information |
|---|
Probab=97.95 E-value=5.1e-05 Score=70.86 Aligned_cols=69 Identities=23% Similarity=0.304 Sum_probs=56.3
Q ss_pred HHcCCcEEEEcCCCccCCCCCcchHHHHHHHHHHcCCCceEEEecCCCCHHHHHHHHHhCcCEEEecHHHHH
Q 017781 239 VQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFIGRPVVY 310 (366)
Q Consensus 239 ~~aGad~I~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~i~vi~~GGI~~~~dv~kalalGAd~V~igr~~l~ 310 (366)
.++|+|.|++.+-.+ .....++.++.+.++++.+ ++||+++|||++.+|+.+++..||++|++|+.++.
T Consensus 37 ~~~G~~~i~i~d~~~-~~~~~~~~~~~i~~i~~~~--~~pv~~~GGI~s~~d~~~~l~~G~~~v~ig~~~~~ 105 (243)
T cd04731 37 NEQGADELVFLDITA-SSEGRETMLDVVERVAEEV--FIPLTVGGGIRSLEDARRLLRAGADKVSINSAAVE 105 (243)
T ss_pred HHCCCCEEEEEcCCc-ccccCcccHHHHHHHHHhC--CCCEEEeCCCCCHHHHHHHHHcCCceEEECchhhh
Confidence 567999888776432 1123455778889998887 79999999999999999999999999999998864
|
Imidazole glycerol phosphate synthase (IGPS) catalyzes the fifth step of histidine biosynthesis, the formation of the imidazole ring. IGPS converts N1-(5'-phosphoribulosyl)-formimino-5-aminoimidazole-4-carboxamide ribonucleotide (PRFAR) to imidazole glycerol phosphate (ImGP) and 5'-(5-aminoimidazole-4-carboxamide) ribonucleotide (AICAR). This conversion involves two tightly coupled reactions in distinct active sites of IGPS. The two catalytic domains can be fused, like in fungi and plants, or peformed by a heterodimer (HisH-glutaminase and HisF-cyclase), like in bacteria. |
| >PRK13957 indole-3-glycerol-phosphate synthase; Provisional | Back alignment and domain information |
|---|
Probab=97.94 E-value=0.00042 Score=64.79 Aligned_cols=82 Identities=21% Similarity=0.214 Sum_probs=56.9
Q ss_pred CCCEEEEeccCHHH----HHcCCcEEEEcCCCccCCCCCcchHHHHHHHHHHcCCCceEEEecCCCCHHHHHHHHHhCcC
Q 017781 225 KLPILVKGVLTAED----VQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGAS 300 (366)
Q Consensus 225 ~~pv~vK~v~~~~d----~~aGad~I~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~i~vi~~GGI~~~~dv~kalalGAd 300 (366)
+.-.+| .+-+.+| .++|++.|-|.|+.-. .-........++...++.+..+|+.|||.+++|+.+.... ||
T Consensus 151 Gle~LV-EVh~~~El~~a~~~ga~iiGINnRdL~---t~~vd~~~~~~L~~~ip~~~~~IsESGI~t~~d~~~l~~~-~d 225 (247)
T PRK13957 151 GMDVLV-EVHTEDEAKLALDCGAEIIGINTRDLD---TFQIHQNLVEEVAAFLPPNIVKVGESGIESRSDLDKFRKL-VD 225 (247)
T ss_pred CCceEE-EECCHHHHHHHHhCCCCEEEEeCCCCc---cceECHHHHHHHHhhCCCCcEEEEcCCCCCHHHHHHHHHh-CC
Confidence 444333 3445555 6777777766664322 2222334455666777777889999999999999987776 99
Q ss_pred EEEecHHHHHH
Q 017781 301 GIFIGRPVVYS 311 (366)
Q Consensus 301 ~V~igr~~l~~ 311 (366)
+|.||+.+|.+
T Consensus 226 avLvG~~lm~~ 236 (247)
T PRK13957 226 AALIGTYFMEK 236 (247)
T ss_pred EEEECHHHhCC
Confidence 99999999874
|
|
| >PRK02083 imidazole glycerol phosphate synthase subunit HisF; Provisional | Back alignment and domain information |
|---|
Probab=97.90 E-value=7.3e-05 Score=70.30 Aligned_cols=69 Identities=23% Similarity=0.320 Sum_probs=58.0
Q ss_pred HHcCCcEEEEcCCCccCCCCCcchHHHHHHHHHHcCCCceEEEecCCCCHHHHHHHHHhCcCEEEecHHHHH
Q 017781 239 VQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFIGRPVVY 310 (366)
Q Consensus 239 ~~aGad~I~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~i~vi~~GGI~~~~dv~kalalGAd~V~igr~~l~ 310 (366)
.+.|++.|.+.+..... ......++.+.++++.+ ++||+++|||++.+|+.+++..||+.|++|+.++.
T Consensus 40 ~~~G~~~i~i~dl~~~~-~~~~~~~~~i~~i~~~~--~ipv~~~GGi~s~~~~~~~l~~Ga~~Viigt~~l~ 108 (253)
T PRK02083 40 NEEGADELVFLDITASS-EGRDTMLDVVERVAEQV--FIPLTVGGGIRSVEDARRLLRAGADKVSINSAAVA 108 (253)
T ss_pred HHcCCCEEEEEeCCccc-ccCcchHHHHHHHHHhC--CCCEEeeCCCCCHHHHHHHHHcCCCEEEEChhHhh
Confidence 57899999987754321 13356889999999887 79999999999999999999999999999998865
|
|
| >PRK13587 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Provisional | Back alignment and domain information |
|---|
Probab=97.90 E-value=0.00012 Score=68.31 Aligned_cols=47 Identities=30% Similarity=0.487 Sum_probs=41.1
Q ss_pred hHHHHHHHHHHcCCCceEEEecCCCCHHHHHHHHHhCcCEEEecHHHHH
Q 017781 262 TIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFIGRPVVY 310 (366)
Q Consensus 262 ~~~~l~~i~~~~~~~i~vi~~GGI~~~~dv~kalalGAd~V~igr~~l~ 310 (366)
.++.+.++.+.. ++||+++|||++.+|+.+++.+|+++|.+|+++..
T Consensus 180 ~~~li~~l~~~~--~ipvi~~GGi~s~edi~~l~~~G~~~vivG~a~~~ 226 (234)
T PRK13587 180 NFELTGQLVKAT--TIPVIASGGIRHQQDIQRLASLNVHAAIIGKAAHQ 226 (234)
T ss_pred CHHHHHHHHHhC--CCCEEEeCCCCCHHHHHHHHHcCCCEEEEhHHHHh
Confidence 456677776665 79999999999999999999999999999999864
|
|
| >TIGR01163 rpe ribulose-phosphate 3-epimerase | Back alignment and domain information |
|---|
Probab=97.89 E-value=0.00081 Score=60.92 Aligned_cols=71 Identities=21% Similarity=0.297 Sum_probs=48.8
Q ss_pred HHcCCcEEEEcCC--CccCCCCCcchHHHHHHHHHHcC---CCceEEEecCCCCHHHHHHHHHhCcCEEEecHHHHH
Q 017781 239 VQAGAAGIIVSNH--GARQLDYVPATIMALEEVVKATQ---GRIPVFLDGGVRRGTDVFKALALGASGIFIGRPVVY 310 (366)
Q Consensus 239 ~~aGad~I~vs~~--gg~~~~~~~~~~~~l~~i~~~~~---~~i~vi~~GGI~~~~dv~kalalGAd~V~igr~~l~ 310 (366)
...++|.|.+... |++.....+..++.+.++++.++ ..+|++++|||+ .+++.+++..|||.+.+|++++.
T Consensus 123 ~~~~~d~i~~~~~~~g~tg~~~~~~~~~~i~~i~~~~~~~~~~~~i~v~GGI~-~env~~l~~~gad~iivgsai~~ 198 (210)
T TIGR01163 123 VLPDVDLVLLMSVNPGFGGQKFIPDTLEKIREVRKMIDENGLSILIEVDGGVN-DDNARELAEAGADILVAGSAIFG 198 (210)
T ss_pred HHhhCCEEEEEEEcCCCCcccccHHHHHHHHHHHHHHHhcCCCceEEEECCcC-HHHHHHHHHcCCCEEEEChHHhC
Confidence 4458999876432 22111223445566666665542 237999999996 79999999999999999999863
|
This family consists of Ribulose-phosphate 3-epimerase, also known as pentose-5-phosphate 3-epimerase (PPE). PPE converts D-ribulose 5-phosphate into D-xylulose 5-phosphate in Calvin's reductive pentose phosphate cycle. It has been found in a wide range of bacteria, archebacteria, fungi and plants. |
| >TIGR00735 hisF imidazoleglycerol phosphate synthase, cyclase subunit | Back alignment and domain information |
|---|
Probab=97.86 E-value=5.8e-05 Score=71.07 Aligned_cols=69 Identities=25% Similarity=0.300 Sum_probs=57.4
Q ss_pred HHcCCcEEEEcCCCccCCCCCcchHHHHHHHHHHcCCCceEEEecCCCCHHHHHHHHHhCcCEEEecHHHHH
Q 017781 239 VQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFIGRPVVY 310 (366)
Q Consensus 239 ~~aGad~I~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~i~vi~~GGI~~~~dv~kalalGAd~V~igr~~l~ 310 (366)
.+.|+|.+++.+.-+. .......++.+.++++.+ ++||+++|||++.+|+.+++.+||+.|.+|+.++.
T Consensus 40 ~~~G~~~l~v~Dl~~~-~~~~~~n~~~i~~i~~~~--~~pv~~~GGi~s~~d~~~~~~~Ga~~vivgt~~~~ 108 (254)
T TIGR00735 40 DEEGADELVFLDITAS-SEGRTTMIDVVERTAETV--FIPLTVGGGIKSIEDVDKLLRAGADKVSINTAAVK 108 (254)
T ss_pred HHcCCCEEEEEcCCcc-cccChhhHHHHHHHHHhc--CCCEEEECCCCCHHHHHHHHHcCCCEEEEChhHhh
Confidence 5679999998774321 113446788899999887 79999999999999999999999999999998864
|
|
| >PRK08649 inosine 5-monophosphate dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=97.86 E-value=6.3e-05 Score=74.52 Aligned_cols=93 Identities=18% Similarity=0.279 Sum_probs=64.6
Q ss_pred CCCCHHHHHHHHHhcCCCEEEEecc-CHHH-----HHcCCcEEEEcCCCccCCCCCcc-hHHHHHHHHHHcCCCceEEEe
Q 017781 210 RSLSWKDVKWLQTITKLPILVKGVL-TAED-----VQAGAAGIIVSNHGARQLDYVPA-TIMALEEVVKATQGRIPVFLD 282 (366)
Q Consensus 210 ~~~~~~~i~~lr~~~~~pv~vK~v~-~~~d-----~~aGad~I~vs~~gg~~~~~~~~-~~~~l~~i~~~~~~~i~vi~~ 282 (366)
+++..+.++.+++. ++++.++... +..+ .++|+|.|+++++.-.+.+.+.. .+..+.++.+.. ++|||+
T Consensus 117 p~l~~~iv~~~~~~-~V~v~vr~~~~~~~e~a~~l~eaGvd~I~vhgrt~~~~h~~~~~~~~~i~~~ik~~--~ipVIa- 192 (368)
T PRK08649 117 PELITERIAEIRDA-GVIVAVSLSPQRAQELAPTVVEAGVDLFVIQGTVVSAEHVSKEGEPLNLKEFIYEL--DVPVIV- 192 (368)
T ss_pred HHHHHHHHHHHHhC-eEEEEEecCCcCHHHHHHHHHHCCCCEEEEeccchhhhccCCcCCHHHHHHHHHHC--CCCEEE-
Confidence 44445678888885 5555444321 2222 89999999997643223332222 345566666665 799999
Q ss_pred cCCCCHHHHHHHHHhCcCEEEecH
Q 017781 283 GGVRRGTDVFKALALGASGIFIGR 306 (366)
Q Consensus 283 GGI~~~~dv~kalalGAd~V~igr 306 (366)
|+|.+.+++.+++.+|||+|++|+
T Consensus 193 G~V~t~e~A~~l~~aGAD~V~VG~ 216 (368)
T PRK08649 193 GGCVTYTTALHLMRTGAAGVLVGI 216 (368)
T ss_pred eCCCCHHHHHHHHHcCCCEEEECC
Confidence 999999999999999999999995
|
|
| >PRK08883 ribulose-phosphate 3-epimerase; Provisional | Back alignment and domain information |
|---|
Probab=97.86 E-value=0.0015 Score=60.37 Aligned_cols=48 Identities=25% Similarity=0.343 Sum_probs=38.2
Q ss_pred chHHHHHHHHHHcC---CCceEEEecCCCCHHHHHHHHHhCcCEEEecHHHH
Q 017781 261 ATIMALEEVVKATQ---GRIPVFLDGGVRRGTDVFKALALGASGIFIGRPVV 309 (366)
Q Consensus 261 ~~~~~l~~i~~~~~---~~i~vi~~GGI~~~~dv~kalalGAd~V~igr~~l 309 (366)
..++.+.++++... .++||.++|||. .+.+.+..++|||.+.+|+.+.
T Consensus 149 ~~lekI~~l~~~~~~~~~~~~I~vdGGI~-~eni~~l~~aGAd~vVvGSaIf 199 (220)
T PRK08883 149 HTLDKLRAVRKMIDESGRDIRLEIDGGVK-VDNIREIAEAGADMFVAGSAIF 199 (220)
T ss_pred hHHHHHHHHHHHHHhcCCCeeEEEECCCC-HHHHHHHHHcCCCEEEEeHHHh
Confidence 34556666666542 148999999998 8899999999999999999864
|
|
| >COG0134 TrpC Indole-3-glycerol phosphate synthase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=97.85 E-value=0.0006 Score=63.77 Aligned_cols=160 Identities=21% Similarity=0.309 Sum_probs=92.1
Q ss_pred HHHHHHHcCCCEEEEecCCCCCcchhHHHh---hhcCCCCccccccccccccCCCccccchhhHH--HhhhccCCCCCHH
Q 017781 141 LVRRAERAGFKAIALTVDTPRLGRREADIK---NRFTLPPFLTLKNFQGLDLGKMDEANDSGLAA--YVAGQIDRSLSWK 215 (366)
Q Consensus 141 ~l~ra~~~G~~ai~vtvd~p~~g~r~~d~~---~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~d~~~~~~ 215 (366)
..+.-++.|+.++=|-.|.+.......+++ ....+|. -.+.+- +....+...+..|+.. .+.. -++-+
T Consensus 71 ia~~Ye~~GAa~iSVLTd~~~F~Gs~e~L~~v~~~v~~Pv--L~KDFi-iD~yQI~~Ar~~GADavLLI~~----~L~~~ 143 (254)
T COG0134 71 IAKAYEEGGAAAISVLTDPKYFQGSFEDLRAVRAAVDLPV--LRKDFI-IDPYQIYEARAAGADAVLLIVA----ALDDE 143 (254)
T ss_pred HHHHHHHhCCeEEEEecCccccCCCHHHHHHHHHhcCCCe--eeccCC-CCHHHHHHHHHcCcccHHHHHH----hcCHH
Confidence 455667789999988888877655554443 3344441 111110 0000000000001000 0111 11222
Q ss_pred HHHHHHHh---cCCCEEEEeccCHHH----HHcCCcEEEEcCCCccCCCCCcchHHHHHHHHHHcCCCceEEEecCCCCH
Q 017781 216 DVKWLQTI---TKLPILVKGVLTAED----VQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRG 288 (366)
Q Consensus 216 ~i~~lr~~---~~~pv~vK~v~~~~d----~~aGad~I~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~i~vi~~GGI~~~ 288 (366)
.++++-+. .+.-++| .+.+.++ .++|++.|-|-|+.-+.+. ..++...++...++.+..+|..+||.++
T Consensus 144 ~l~el~~~A~~LGm~~LV-EVh~~eEl~rAl~~ga~iIGINnRdL~tf~---vdl~~t~~la~~~p~~~~~IsESGI~~~ 219 (254)
T COG0134 144 QLEELVDRAHELGMEVLV-EVHNEEELERALKLGAKIIGINNRDLTTLE---VDLETTEKLAPLIPKDVILISESGISTP 219 (254)
T ss_pred HHHHHHHHHHHcCCeeEE-EECCHHHHHHHHhCCCCEEEEeCCCcchhe---ecHHHHHHHHhhCCCCcEEEecCCCCCH
Confidence 23333332 3544444 3455555 7789988888775433222 2334455666667778899999999999
Q ss_pred HHHHHHHHhCcCEEEecHHHHHH
Q 017781 289 TDVFKALALGASGIFIGRPVVYS 311 (366)
Q Consensus 289 ~dv~kalalGAd~V~igr~~l~~ 311 (366)
+|+.+....|||++.||+.+|..
T Consensus 220 ~dv~~l~~~ga~a~LVG~slM~~ 242 (254)
T COG0134 220 EDVRRLAKAGADAFLVGEALMRA 242 (254)
T ss_pred HHHHHHHHcCCCEEEecHHHhcC
Confidence 99999999999999999999864
|
|
| >PF05690 ThiG: Thiazole biosynthesis protein ThiG; InterPro: IPR008867 This family consists of several bacterial thiazole biosynthesis protein G sequences | Back alignment and domain information |
|---|
Probab=97.84 E-value=9.9e-05 Score=67.74 Aligned_cols=68 Identities=19% Similarity=0.364 Sum_probs=49.6
Q ss_pred HHcCCcEEEEcCCC-ccCCCCCcchHHHHHHHHHHcCCCceEEEecCCCCHHHHHHHHHhCcCEEEecHHHHH
Q 017781 239 VQAGAAGIIVSNHG-ARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFIGRPVVY 310 (366)
Q Consensus 239 ~~aGad~I~vs~~g-g~~~~~~~~~~~~l~~i~~~~~~~i~vi~~GGI~~~~dv~kalalGAd~V~igr~~l~ 310 (366)
.++||..|---+.. |+ ..|......|..+++.. ++|||+|+||.++.|+.+|+++|||+|.+-+++..
T Consensus 141 ~d~GcaavMPlgsPIGS--g~Gi~n~~~l~~i~~~~--~vPvIvDAGiG~pSdaa~AMElG~daVLvNTAiA~ 209 (247)
T PF05690_consen 141 EDAGCAAVMPLGSPIGS--GRGIQNPYNLRIIIERA--DVPVIVDAGIGTPSDAAQAMELGADAVLVNTAIAK 209 (247)
T ss_dssp HHTT-SEBEEBSSSTTT-----SSTHHHHHHHHHHG--SSSBEEES---SHHHHHHHHHTT-SEEEESHHHHT
T ss_pred HHCCCCEEEeccccccc--CcCCCCHHHHHHHHHhc--CCcEEEeCCCCCHHHHHHHHHcCCceeehhhHHhc
Confidence 99999998754421 21 12455677888888887 89999999999999999999999999999998743
|
ThiG, together with ThiF and ThiH, is proposed to be involved in the synthesis of 4-methyl-5-(b-hydroxyethyl)thiazole (THZ) which is an intermediate in the thiazole production pathway [].; GO: 0009228 thiamine biosynthetic process; PDB: 1WV2_B 1TYG_C 1XM3_B 2HTM_C 2YZR_C. |
| >PRK07455 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional | Back alignment and domain information |
|---|
Probab=97.84 E-value=0.00058 Score=61.44 Aligned_cols=167 Identities=14% Similarity=0.154 Sum_probs=94.1
Q ss_pred EEEeeecCCHHHHHHHHHHHHHcCCCEEEEecCCCCCcchhHHHhhhcCCCCccccccccccccCCCccccchhhHHHhh
Q 017781 126 FFQLYVYKDRNVVAQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLTLKNFQGLDLGKMDEANDSGLAAYVA 205 (366)
Q Consensus 126 ~~Qly~~~d~~~~~~~l~ra~~~G~~ai~vtvd~p~~g~r~~d~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 205 (366)
.+-+....+.+...+.++.+-+.|++.+-++...+..-......+..+ |. .... ...+......+........++
T Consensus 14 ~~~v~r~~~~~~~~~~~~~~~~~Gv~~vqlr~k~~~~~e~~~~~~~~~--~~-~~~g-~gtvl~~d~~~~A~~~gAdgv- 88 (187)
T PRK07455 14 AIAVIRAPDLELGLQMAEAVAAGGMRLIEITWNSDQPAELISQLREKL--PE-CIIG-TGTILTLEDLEEAIAAGAQFC- 88 (187)
T ss_pred EEEEEEcCCHHHHHHHHHHHHHCCCCEEEEeCCCCCHHHHHHHHHHhC--CC-cEEe-EEEEEcHHHHHHHHHcCCCEE-
Confidence 445555667777777777777778888877776654322222222211 10 0000 000000000000000000011
Q ss_pred hccCCCCCHHHHHHHHHhcCCCEEEEeccCHHH----HHcCCcEEEEcCCCccCCCCCcchHHHHHHHHHHcCCCceEEE
Q 017781 206 GQIDRSLSWKDVKWLQTITKLPILVKGVLTAED----VQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFL 281 (366)
Q Consensus 206 ~~~d~~~~~~~i~~lr~~~~~pv~vK~v~~~~d----~~aGad~I~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~i~vi~ 281 (366)
.-|.+..+.++ .++..+++.++. +.|+.+ .+.|+|+|.+.-. ......+.+..++..++ ++|+++
T Consensus 89 --~~p~~~~~~~~-~~~~~~~~~i~G-~~t~~e~~~A~~~Gadyv~~Fpt------~~~~G~~~l~~~~~~~~-~ipvva 157 (187)
T PRK07455 89 --FTPHVDPELIE-AAVAQDIPIIPG-ALTPTEIVTAWQAGASCVKVFPV------QAVGGADYIKSLQGPLG-HIPLIP 157 (187)
T ss_pred --ECCCCCHHHHH-HHHHcCCCEEcC-cCCHHHHHHHHHCCCCEEEECcC------CcccCHHHHHHHHhhCC-CCcEEE
Confidence 11233434443 455556776654 788877 7899999988321 11223566777766652 599999
Q ss_pred ecCCCCHHHHHHHHHhCcCEEEecHHHH
Q 017781 282 DGGVRRGTDVFKALALGASGIFIGRPVV 309 (366)
Q Consensus 282 ~GGI~~~~dv~kalalGAd~V~igr~~l 309 (366)
.||| +.+++...++.||++|.+++.++
T Consensus 158 iGGI-~~~n~~~~l~aGa~~vav~s~i~ 184 (187)
T PRK07455 158 TGGV-TLENAQAFIQAGAIAVGLSGQLF 184 (187)
T ss_pred eCCC-CHHHHHHHHHCCCeEEEEehhcc
Confidence 9999 78999999999999999998764
|
|
| >PLN02411 12-oxophytodienoate reductase | Back alignment and domain information |
|---|
Probab=97.80 E-value=0.0006 Score=68.30 Aligned_cols=96 Identities=14% Similarity=0.035 Sum_probs=66.1
Q ss_pred CCHHHHHHHHHhcC-CCEEEEeccC-----------HHH--------HH----c--CCcEEEEcCCCcc---CCC---CC
Q 017781 212 LSWKDVKWLQTITK-LPILVKGVLT-----------AED--------VQ----A--GAAGIIVSNHGAR---QLD---YV 259 (366)
Q Consensus 212 ~~~~~i~~lr~~~~-~pv~vK~v~~-----------~~d--------~~----a--Gad~I~vs~~gg~---~~~---~~ 259 (366)
+..+.|+.+|+.++ -.|.+|.... .++ .+ . |+|+|.||..... +.. .+
T Consensus 217 F~lEIi~aVr~~vg~d~vgvRiS~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~vd~i~vs~g~~~~~~~~~~~~~~ 296 (391)
T PLN02411 217 FLMQVVQAVVSAIGADRVGVRVSPAIDHLDATDSDPLNLGLAVVERLNKLQLQNGSKLAYLHVTQPRYTAYGQTESGRHG 296 (391)
T ss_pred HHHHHHHHHHHHcCCCeEEEEEcccccccCCCCCcchhhHHHHHHHHHHHHhhcCCCeEEEEecCCcccccCCCcccccC
Confidence 56788999999984 2488887531 111 22 2 5999999863210 000 11
Q ss_pred cc-h-HHHHHHHHHHcCCCceEEEecCCCCHHHHHHHHHhC-cCEEEecHHHHH
Q 017781 260 PA-T-IMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALG-ASGIFIGRPVVY 310 (366)
Q Consensus 260 ~~-~-~~~l~~i~~~~~~~i~vi~~GGI~~~~dv~kalalG-Ad~V~igr~~l~ 310 (366)
+. . .....++++.+ ++|||+.|+| +.+++.++|+.| ||+|.+||+||.
T Consensus 297 ~~~~~~~~a~~ik~~v--~~pvi~~G~i-~~~~a~~~l~~g~aDlV~~gR~~ia 347 (391)
T PLN02411 297 SEEEEAQLMRTLRRAY--QGTFMCSGGF-TRELGMQAVQQGDADLVSYGRLFIS 347 (391)
T ss_pred CccchhHHHHHHHHHc--CCCEEEECCC-CHHHHHHHHHcCCCCEEEECHHHHh
Confidence 11 1 13446677777 7899999999 679999999999 999999999986
|
|
| >PF00290 Trp_syntA: Tryptophan synthase alpha chain; InterPro: IPR002028 Tryptophan synthase (4 | Back alignment and domain information |
|---|
Probab=97.80 E-value=0.0014 Score=61.91 Aligned_cols=50 Identities=24% Similarity=0.395 Sum_probs=39.4
Q ss_pred HHHHHHHHHcCCCceEEEecCCCCHHHHHHHHHhCcCEEEecHHHHHHhhhcC
Q 017781 264 MALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFIGRPVVYSLAAEG 316 (366)
Q Consensus 264 ~~l~~i~~~~~~~i~vi~~GGI~~~~dv~kalalGAd~V~igr~~l~~l~~~G 316 (366)
+.+..+++.. ++||++-=||++++++.+.. .|||+|.||++++..+...+
T Consensus 188 ~~i~~ik~~~--~~Pv~vGFGI~~~e~~~~~~-~~aDGvIVGSa~v~~i~~~~ 237 (259)
T PF00290_consen 188 EFIKRIKKHT--DLPVAVGFGISTPEQAKKLA-AGADGVIVGSAFVKIIEENG 237 (259)
T ss_dssp HHHHHHHHTT--SS-EEEESSS-SHHHHHHHH-TTSSEEEESHHHHHHHHHTC
T ss_pred HHHHHHHhhc--CcceEEecCCCCHHHHHHHH-ccCCEEEECHHHHHHHHHcc
Confidence 4566666655 89999988999999999888 99999999999998765434
|
2.1.20 from EC) catalyzes the last step in the biosynthesis of tryptophan [, ]: |
| >PRK13802 bifunctional indole-3-glycerol phosphate synthase/tryptophan synthase subunit beta; Provisional | Back alignment and domain information |
|---|
Probab=97.75 E-value=0.00075 Score=71.88 Aligned_cols=164 Identities=21% Similarity=0.255 Sum_probs=93.1
Q ss_pred HHHHHHHHHcCCCEEEEecCCCCCcchhHHHhh---hcCCCCccccccccccccCCCccccchhhHHHhhhccCCCCCHH
Q 017781 139 AQLVRRAERAGFKAIALTVDTPRLGRREADIKN---RFTLPPFLTLKNFQGLDLGKMDEANDSGLAAYVAGQIDRSLSWK 215 (366)
Q Consensus 139 ~~~l~ra~~~G~~ai~vtvd~p~~g~r~~d~~~---~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~ 215 (366)
.++.+.-++.|+.+|=|-.|....+....|++. ...+|- -.+.+- +....+.+....++...+. .-.-++-+
T Consensus 73 ~~~a~~y~~~GA~aiSVlTe~~~F~Gs~~~l~~vr~~v~~Pv--LrKDFI-id~~QI~ea~~~GADavLL--I~~~L~~~ 147 (695)
T PRK13802 73 AALAREYEQGGASAISVLTEGRRFLGSLDDFDKVRAAVHIPV--LRKDFI-VTDYQIWEARAHGADLVLL--IVAALDDA 147 (695)
T ss_pred HHHHHHHHHcCCcEEEEecCcCcCCCCHHHHHHHHHhCCCCE--Eecccc-CCHHHHHHHHHcCCCEeeh--hHhhcCHH
Confidence 345566788999999888887766655555543 233331 111110 0000010000000000000 00112223
Q ss_pred HHHHHHHh---cCCCEEEEeccCHHH----HHcCCcEEEEcCCCccCCCCCcchHHHHHHHHHHcCCCceEEEecCCCCH
Q 017781 216 DVKWLQTI---TKLPILVKGVLTAED----VQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRG 288 (366)
Q Consensus 216 ~i~~lr~~---~~~pv~vK~v~~~~d----~~aGad~I~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~i~vi~~GGI~~~ 288 (366)
.++.+.+. .++-++| .+-+.+| .++|++.|-|-|+.= ..-...++...++...++.++.+|+.+||+++
T Consensus 148 ~l~~l~~~a~~lGme~Lv-Evh~~~el~~a~~~ga~iiGINnRdL---~tf~vd~~~t~~L~~~ip~~~~~VsESGI~~~ 223 (695)
T PRK13802 148 QLKHLLDLAHELGMTVLV-ETHTREEIERAIAAGAKVIGINARNL---KDLKVDVNKYNELAADLPDDVIKVAESGVFGA 223 (695)
T ss_pred HHHHHHHHHHHcCCeEEE-EeCCHHHHHHHHhCCCCEEEEeCCCC---ccceeCHHHHHHHHhhCCCCcEEEEcCCCCCH
Confidence 34444433 3554444 3556665 888999887877532 22222344455566666777889999999999
Q ss_pred HHHHHHHHhCcCEEEecHHHHHH
Q 017781 289 TDVFKALALGASGIFIGRPVVYS 311 (366)
Q Consensus 289 ~dv~kalalGAd~V~igr~~l~~ 311 (366)
+|+..+..+|||+|.||+.+|.+
T Consensus 224 ~d~~~l~~~G~davLIGeslm~~ 246 (695)
T PRK13802 224 VEVEDYARAGADAVLVGEGVATA 246 (695)
T ss_pred HHHHHHHHCCCCEEEECHHhhCC
Confidence 99999999999999999988753
|
|
| >PRK00043 thiE thiamine-phosphate pyrophosphorylase; Reviewed | Back alignment and domain information |
|---|
Probab=97.72 E-value=0.00062 Score=61.77 Aligned_cols=74 Identities=26% Similarity=0.338 Sum_probs=54.5
Q ss_pred cCHHH----HHcCCcEEEEcCCC--ccCCC-CCcchHHHHHHHHHHcCCCceEEEecCCCCHHHHHHHHHhCcCEEEecH
Q 017781 234 LTAED----VQAGAAGIIVSNHG--ARQLD-YVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFIGR 306 (366)
Q Consensus 234 ~~~~d----~~aGad~I~vs~~g--g~~~~-~~~~~~~~l~~i~~~~~~~i~vi~~GGI~~~~dv~kalalGAd~V~igr 306 (366)
.+.++ .+.|+|.|.++.-. +.... ..+..++.+.++++..+ ++||++.||| +.+++.+++++||++|.+|+
T Consensus 112 ~t~~e~~~a~~~gaD~v~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~-~~~v~a~GGI-~~~~i~~~~~~Ga~gv~~gs 189 (212)
T PRK00043 112 HTLEEAAAALAAGADYVGVGPIFPTPTKKDAKAPQGLEGLREIRAAVG-DIPIVAIGGI-TPENAPEVLEAGADGVAVVS 189 (212)
T ss_pred CCHHHHHHHhHcCCCEEEECCccCCCCCCCCCCCCCHHHHHHHHHhcC-CCCEEEECCc-CHHHHHHHHHcCCCEEEEeH
Confidence 45555 68899999886421 11111 11223778888877762 4999999999 78999999999999999999
Q ss_pred HHH
Q 017781 307 PVV 309 (366)
Q Consensus 307 ~~l 309 (366)
.+.
T Consensus 190 ~i~ 192 (212)
T PRK00043 190 AIT 192 (212)
T ss_pred Hhh
Confidence 865
|
|
| >PRK06015 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional | Back alignment and domain information |
|---|
Probab=97.72 E-value=0.0018 Score=58.82 Aligned_cols=167 Identities=14% Similarity=0.097 Sum_probs=104.2
Q ss_pred EEEeeecCCHHHHHHHHHHHHHcCCCEEEEecCCCCCcchhHHHhhhcCCCCccccccccccccCCCccccchhhHHHhh
Q 017781 126 FFQLYVYKDRNVVAQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLTLKNFQGLDLGKMDEANDSGLAAYVA 205 (366)
Q Consensus 126 ~~Qly~~~d~~~~~~~l~ra~~~G~~ai~vtvd~p~~g~r~~d~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 205 (366)
.+-+....+.+...++++.+.+.|++.+-||.++|..-.-.+.++..+ |. +.+. ..........+........++.
T Consensus 6 vv~Vir~~~~~~a~~ia~al~~gGi~~iEit~~tp~a~~~I~~l~~~~--~~-~~vG-AGTVl~~e~a~~ai~aGA~Fiv 81 (201)
T PRK06015 6 VIPVLLIDDVEHAVPLARALAAGGLPAIEITLRTPAALDAIRAVAAEV--EE-AIVG-AGTILNAKQFEDAAKAGSRFIV 81 (201)
T ss_pred EEEEEEcCCHHHHHHHHHHHHHCCCCEEEEeCCCccHHHHHHHHHHHC--CC-CEEe-eEeCcCHHHHHHHHHcCCCEEE
Confidence 344555678888889999999999999999999987544445555444 21 1110 0000000000000011111222
Q ss_pred hccCCCCCHHHHHHHHHhcCCCEEEEeccCHHH----HHcCCcEEEEcCCCccCCCCCcchHHHHHHHHHHcCCCceEEE
Q 017781 206 GQIDRSLSWKDVKWLQTITKLPILVKGVLTAED----VQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFL 281 (366)
Q Consensus 206 ~~~d~~~~~~~i~~lr~~~~~pv~vK~v~~~~d----~~aGad~I~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~i~vi~ 281 (366)
.|.++-+.+++.++ .++| ++=|++|+.| .++|+|.|.+.-.+ .-+|+.. ++.++.-++ +++++.
T Consensus 82 ---SP~~~~~vi~~a~~-~~i~-~iPG~~TptEi~~A~~~Ga~~vK~FPa~---~~GG~~y---ikal~~plp-~~~l~p 149 (201)
T PRK06015 82 ---SPGTTQELLAAAND-SDVP-LLPGAATPSEVMALREEGYTVLKFFPAE---QAGGAAF---LKALSSPLA-GTFFCP 149 (201)
T ss_pred ---CCCCCHHHHHHHHH-cCCC-EeCCCCCHHHHHHHHHCCCCEEEECCch---hhCCHHH---HHHHHhhCC-CCcEEe
Confidence 35566777888776 4776 4557889887 99999999986521 1123433 444444443 799999
Q ss_pred ecCCCCHHHHHHHHHhCcCEEEecHHHH
Q 017781 282 DGGVRRGTDVFKALALGASGIFIGRPVV 309 (366)
Q Consensus 282 ~GGI~~~~dv~kalalGAd~V~igr~~l 309 (366)
+|||. .+++...|.+|+.+++.|+.+.
T Consensus 150 tGGV~-~~n~~~~l~ag~~~~~ggs~l~ 176 (201)
T PRK06015 150 TGGIS-LKNARDYLSLPNVVCVGGSWVA 176 (201)
T ss_pred cCCCC-HHHHHHHHhCCCeEEEEchhhC
Confidence 99995 4799999999988777776654
|
|
| >PRK05848 nicotinate-nucleotide pyrophosphorylase; Provisional | Back alignment and domain information |
|---|
Probab=97.71 E-value=0.00037 Score=66.27 Aligned_cols=85 Identities=14% Similarity=0.142 Sum_probs=66.1
Q ss_pred HHHHHHHHHhcC-CCEEEEeccCHHH----HHcCCcEEEEcCCCccCCCCCcchHHHHHHHHHHcC---CCceEEEecCC
Q 017781 214 WKDVKWLQTITK-LPILVKGVLTAED----VQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQ---GRIPVFLDGGV 285 (366)
Q Consensus 214 ~~~i~~lr~~~~-~pv~vK~v~~~~d----~~aGad~I~vs~~gg~~~~~~~~~~~~l~~i~~~~~---~~i~vi~~GGI 285 (366)
.+.++.+|+..+ ...+.-.+.+.++ .++|+|.|-+.| .+.+.+.++++..+ .++.+.++|||
T Consensus 169 ~~~v~~~k~~~p~~~~I~VEv~tleea~~A~~~GaDiI~LDn----------~~~e~l~~~v~~~~~~~~~~~ieAsGgI 238 (273)
T PRK05848 169 KEFIQHARKNIPFTAKIEIECESLEEAKNAMNAGADIVMCDN----------MSVEEIKEVVAYRNANYPHVLLEASGNI 238 (273)
T ss_pred HHHHHHHHHhCCCCceEEEEeCCHHHHHHHHHcCCCEEEECC----------CCHHHHHHHHHHhhccCCCeEEEEECCC
Confidence 456888988875 2334446778887 999999998877 24556666665543 36779999999
Q ss_pred CCHHHHHHHHHhCcCEEEecHHHH
Q 017781 286 RRGTDVFKALALGASGIFIGRPVV 309 (366)
Q Consensus 286 ~~~~dv~kalalGAd~V~igr~~l 309 (366)
+.+.+.++..+|+|.+.+|+++.
T Consensus 239 -t~~ni~~ya~~GvD~IsvG~l~~ 261 (273)
T PRK05848 239 -TLENINAYAKSGVDAISSGSLIH 261 (273)
T ss_pred -CHHHHHHHHHcCCCEEEeChhhc
Confidence 99999999999999999998765
|
|
| >TIGR03128 RuMP_HxlA 3-hexulose-6-phosphate synthase | Back alignment and domain information |
|---|
Probab=97.69 E-value=0.0011 Score=60.13 Aligned_cols=91 Identities=18% Similarity=0.180 Sum_probs=61.9
Q ss_pred HHHHHHHhcCCCEEEEec--cCH-HH----HHcCCcEEEEcCCCccCCCCCcchHHHHHHHHHHcCCCceEEEecCCCCH
Q 017781 216 DVKWLQTITKLPILVKGV--LTA-ED----VQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRG 288 (366)
Q Consensus 216 ~i~~lr~~~~~pv~vK~v--~~~-~d----~~aGad~I~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~i~vi~~GGI~~~ 288 (366)
.++++++ .++++++-.. .+. ++ .+.|+|.|.+......+ ..++..++.+.++++.++ .+++.++||| +.
T Consensus 94 ~i~~~~~-~g~~~~~~~~~~~t~~~~~~~~~~~g~d~v~~~pg~~~~-~~~~~~~~~i~~l~~~~~-~~~i~v~GGI-~~ 169 (206)
T TIGR03128 94 AVKAAKK-HGKEVQVDLINVKDKVKRAKELKELGADYIGVHTGLDEQ-AKGQNPFEDLQTILKLVK-EARVAVAGGI-NL 169 (206)
T ss_pred HHHHHHH-cCCEEEEEecCCCChHHHHHHHHHcCCCEEEEcCCcCcc-cCCCCCHHHHHHHHHhcC-CCcEEEECCc-CH
Confidence 4555555 4788777532 222 33 67799999875321111 223445666777777664 4677779999 88
Q ss_pred HHHHHHHHhCcCEEEecHHHHH
Q 017781 289 TDVFKALALGASGIFIGRPVVY 310 (366)
Q Consensus 289 ~dv~kalalGAd~V~igr~~l~ 310 (366)
+.+.+++..|||.|.+||.++.
T Consensus 170 ~n~~~~~~~Ga~~v~vGsai~~ 191 (206)
T TIGR03128 170 DTIPDVIKLGPDIVIVGGAITK 191 (206)
T ss_pred HHHHHHHHcCCCEEEEeehhcC
Confidence 8999999999999999999753
|
at the cost of also yielding formaldehyde. These latter species tend usually have a formaldehyde-activating enzyme to attach formaldehyde to the C1 carrier tetrahydromethanopterin. In these species, the enzyme is viewed as a lyase rather than a synthase and is called D-arabino 3-hexulose 6-phosphate formaldehyde lyase. Note that there is some overlap in specificity with the Escherichia coli enzyme 3-keto-L-gulonate 6-phosphate decarboxylase. |
| >PRK07028 bifunctional hexulose-6-phosphate synthase/ribonuclease regulator; Validated | Back alignment and domain information |
|---|
Probab=97.69 E-value=0.0014 Score=66.47 Aligned_cols=90 Identities=21% Similarity=0.280 Sum_probs=62.0
Q ss_pred HHHHHHHhcCCCEEEEec--cCH-HH----HHcCCcEEEEcCCCccCCCCCcchHHHHHHHHHHcCCCceEEEecCCCCH
Q 017781 216 DVKWLQTITKLPILVKGV--LTA-ED----VQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRG 288 (366)
Q Consensus 216 ~i~~lr~~~~~pv~vK~v--~~~-~d----~~aGad~I~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~i~vi~~GGI~~~ 288 (366)
.++.+++ .+.++++..+ .+. +. .+.|+|+|.++. |......++..++.+.++++.+ ++||++.||| +.
T Consensus 99 ~i~~a~~-~G~~~~~g~~s~~t~~e~~~~a~~~GaD~I~~~p-g~~~~~~~~~~~~~l~~l~~~~--~iPI~a~GGI-~~ 173 (430)
T PRK07028 99 AVRAARK-YGVRLMADLINVPDPVKRAVELEELGVDYINVHV-GIDQQMLGKDPLELLKEVSEEV--SIPIAVAGGL-DA 173 (430)
T ss_pred HHHHHHH-cCCEEEEEecCCCCHHHHHHHHHhcCCCEEEEEe-ccchhhcCCChHHHHHHHHhhC--CCcEEEECCC-CH
Confidence 4555555 4666665322 232 22 678999997652 2211112334567788877765 6999999999 68
Q ss_pred HHHHHHHHhCcCEEEecHHHHH
Q 017781 289 TDVFKALALGASGIFIGRPVVY 310 (366)
Q Consensus 289 ~dv~kalalGAd~V~igr~~l~ 310 (366)
+.+.++++.|||.+.+||.++.
T Consensus 174 ~n~~~~l~aGAdgv~vGsaI~~ 195 (430)
T PRK07028 174 ETAAKAVAAGADIVIVGGNIIK 195 (430)
T ss_pred HHHHHHHHcCCCEEEEChHHcC
Confidence 9999999999999999999764
|
|
| >cd04726 KGPDC_HPS 3-Keto-L-gulonate 6-phosphate decarboxylase (KGPDC) and D-arabino-3-hexulose-6-phosphate synthase (HPS) | Back alignment and domain information |
|---|
Probab=97.67 E-value=0.0011 Score=59.80 Aligned_cols=89 Identities=21% Similarity=0.203 Sum_probs=62.7
Q ss_pred HHHHHHHhcCCCEEEE--eccCHHH----HHcCCcEEEEc-CCCccCCCCCcchHHHHHHHHHHcCCCceEEEecCCCCH
Q 017781 216 DVKWLQTITKLPILVK--GVLTAED----VQAGAAGIIVS-NHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRG 288 (366)
Q Consensus 216 ~i~~lr~~~~~pv~vK--~v~~~~d----~~aGad~I~vs-~~gg~~~~~~~~~~~~l~~i~~~~~~~i~vi~~GGI~~~ 288 (366)
.++.+++ .++++++= +..++++ .+.|+|.+.+. +..+... +.+...+.+.++++.. ++|++++|||+ .
T Consensus 95 ~i~~~~~-~g~~~~v~~~~~~t~~e~~~~~~~~~d~v~~~~~~~~~~~-~~~~~~~~i~~~~~~~--~~~i~~~GGI~-~ 169 (202)
T cd04726 95 AVKAAKK-YGKEVQVDLIGVEDPEKRAKLLKLGVDIVILHRGIDAQAA-GGWWPEDDLKKVKKLL--GVKVAVAGGIT-P 169 (202)
T ss_pred HHHHHHH-cCCeEEEEEeCCCCHHHHHHHHHCCCCEEEEcCccccccc-CCCCCHHHHHHHHhhc--CCCEEEECCcC-H
Confidence 4555554 46676653 4456666 67799998874 2211111 1344567777776553 79999999995 9
Q ss_pred HHHHHHHHhCcCEEEecHHHH
Q 017781 289 TDVFKALALGASGIFIGRPVV 309 (366)
Q Consensus 289 ~dv~kalalGAd~V~igr~~l 309 (366)
+++.+++..|||+|.+|+++.
T Consensus 170 ~~i~~~~~~Gad~vvvGsai~ 190 (202)
T cd04726 170 DTLPEFKKAGADIVIVGRAIT 190 (202)
T ss_pred HHHHHHHhcCCCEEEEeehhc
Confidence 999999999999999999975
|
KGPDC catalyzes the formation of L-xylulose 5-phosphate and carbon dioxide from 3-keto-L-gulonate 6-phosphate as part of the anaerobic pathway for L-ascorbate utilization in some eubacteria. HPS catalyzes the formation of D-arabino-3-hexulose-6-phosphate from D-ribulose 5-phosphate and formaldehyde in microorganisms that can use formaldehyde as a carbon source. Both catalyze reactions that involve the Mg2+-assisted formation and stabilization of 1,2-enediolate reaction intermediates. |
| >PRK00748 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Validated | Back alignment and domain information |
|---|
Probab=97.66 E-value=0.00034 Score=64.69 Aligned_cols=69 Identities=29% Similarity=0.379 Sum_probs=56.1
Q ss_pred HHcCCcEEEEcCCCccCCCCCcchHHHHHHHHHHcCCCceEEEecCCCCHHHHHHHHHhCcCEEEecHHHHH
Q 017781 239 VQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFIGRPVVY 310 (366)
Q Consensus 239 ~~aGad~I~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~i~vi~~GGI~~~~dv~kalalGAd~V~igr~~l~ 310 (366)
.+.|+|.+.+..-.|. ..+....++.+.++++.+ .+||+++|||++.+|+.+++.+||+.|.+|+.++.
T Consensus 40 ~~~g~~~i~v~dld~~-~~g~~~~~~~i~~i~~~~--~~pv~~~GGI~~~ed~~~~~~~Ga~~vilg~~~l~ 108 (233)
T PRK00748 40 EDQGAKWLHLVDLDGA-KAGKPVNLELIEAIVKAV--DIPVQVGGGIRSLETVEALLDAGVSRVIIGTAAVK 108 (233)
T ss_pred HHcCCCEEEEEeCCcc-ccCCcccHHHHHHHHHHC--CCCEEEcCCcCCHHHHHHHHHcCCCEEEECchHHh
Confidence 5578899987663221 123346788899998887 79999999999999999999999999999998865
|
|
| >cd00958 DhnA Class I fructose-1,6-bisphosphate (FBP) aldolases of the archaeal type (DhnA homologs) found in bacteria and archaea | Back alignment and domain information |
|---|
Probab=97.66 E-value=0.00068 Score=62.89 Aligned_cols=61 Identities=28% Similarity=0.536 Sum_probs=49.0
Q ss_pred HHcCCcEEEEcCCCccCCCCCcchHHHHHHHHHHcCCCceEEEecCC--CCHHH----HHHHHHhCcCEEEecHHHHH
Q 017781 239 VQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGV--RRGTD----VFKALALGASGIFIGRPVVY 310 (366)
Q Consensus 239 ~~aGad~I~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~i~vi~~GGI--~~~~d----v~kalalGAd~V~igr~~l~ 310 (366)
.++|+|+|.+++.+ .++.+.++.+.. .+||++.||+ .+.+| +..++.+||++|.+||.++.
T Consensus 153 ~~~GaD~Ik~~~~~---------~~~~~~~i~~~~--~~pvv~~GG~~~~~~~~~l~~~~~~~~~Ga~gv~vg~~i~~ 219 (235)
T cd00958 153 AELGADIVKTKYTG---------DAESFKEVVEGC--PVPVVIAGGPKKDSEEEFLKMVYDAMEAGAAGVAVGRNIFQ 219 (235)
T ss_pred HHHCCCEEEecCCC---------CHHHHHHHHhcC--CCCEEEeCCCCCCCHHHHHHHHHHHHHcCCcEEEechhhhc
Confidence 68899999985422 456777777766 6899999997 67766 77788999999999999874
|
Catalysis of the enzymes proceeds via a Schiff-base mechanism like other class I aldolases, although this subfamily is clearly divergent based on sequence similarity to other class I and class II (metal dependent) aldolase subfamilies. |
| >TIGR00734 hisAF_rel hisA/hisF family protein | Back alignment and domain information |
|---|
Probab=97.64 E-value=0.00015 Score=66.92 Aligned_cols=49 Identities=20% Similarity=0.364 Sum_probs=44.2
Q ss_pred chHHHHHHHHHHcCCCceEEEecCCCCHHHHHHHHHhCcCEEEecHHHHHH
Q 017781 261 ATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFIGRPVVYS 311 (366)
Q Consensus 261 ~~~~~l~~i~~~~~~~i~vi~~GGI~~~~dv~kalalGAd~V~igr~~l~~ 311 (366)
+.++.+.++.+.+ .+|||++|||++.+|+.+...+|||+|.+|++|..+
T Consensus 171 ~d~eli~~i~~~~--~~pvia~GGi~s~ed~~~l~~~Ga~~vivgsal~~g 219 (221)
T TIGR00734 171 PNLELLTKTLELS--EHPVMLGGGISGVEDLELLKEMGVSAVLVATAVHKG 219 (221)
T ss_pred CCHHHHHHHHhhC--CCCEEEeCCCCCHHHHHHHHHCCCCEEEEhHHhhCC
Confidence 4788888998877 799999999999999999888999999999998653
|
This alignment models a family of proteins found so far in three archaeal species: Methanobacterium thermoautotrophicum, Methanococcus jannaschii, and Archaeoglobus fulgidus. This protein is homologous to phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase (HisA) and, with lower similarity, to the cyclase HisF, both of which are enzymes of histidine biosynthesis. Each species with this protein also encodes HisA. The function of this protein is unknown. |
| >PRK06806 fructose-bisphosphate aldolase; Provisional | Back alignment and domain information |
|---|
Probab=97.64 E-value=0.021 Score=54.63 Aligned_cols=105 Identities=17% Similarity=0.226 Sum_probs=71.6
Q ss_pred cCHHH-----HHcCCcEEEEc--CCCccCCCCCcchHHHHHHHHHHcCCCceEEEec--CCCCHHHHHHHHHhCcCEEEe
Q 017781 234 LTAED-----VQAGAAGIIVS--NHGARQLDYVPATIMALEEVVKATQGRIPVFLDG--GVRRGTDVFKALALGASGIFI 304 (366)
Q Consensus 234 ~~~~d-----~~aGad~I~vs--~~gg~~~~~~~~~~~~l~~i~~~~~~~i~vi~~G--GI~~~~dv~kalalGAd~V~i 304 (366)
.++++ .+.|+|++-++ +-.|...+..+-.++.|.++++.+ ++|+++-| || +.+++.+++..|++.|.+
T Consensus 153 t~~eea~~f~~~tg~DyLAvaiG~~hg~~~~~~~l~~~~L~~i~~~~--~iPlV~hG~SGI-~~e~~~~~i~~G~~kinv 229 (281)
T PRK06806 153 TSTTEAKRFAEETDVDALAVAIGNAHGMYNGDPNLRFDRLQEINDVV--HIPLVLHGGSGI-SPEDFKKCIQHGIRKINV 229 (281)
T ss_pred CCHHHHHHHHHhhCCCEEEEccCCCCCCCCCCCccCHHHHHHHHHhc--CCCEEEECCCCC-CHHHHHHHHHcCCcEEEE
Confidence 45555 34699999994 322322222234788999999988 79999999 88 578899999999999999
Q ss_pred cHHHHHHhhh-------cCH-----HHHHHHHHHHHHHHHHHHHHcCCC
Q 017781 305 GRPVVYSLAA-------EGE-----KGVRRVLEMLREEFELAMALSGCR 341 (366)
Q Consensus 305 gr~~l~~l~~-------~G~-----~gv~~~~~~l~~el~~~m~~~G~~ 341 (366)
.+.+..+... ..+ .-.....+.+++..+..|+.+|..
T Consensus 230 ~T~i~~a~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~gs~ 278 (281)
T PRK06806 230 ATATFNSVITAVNNLVLNTPYSDYFTYHQDVIKAAYENVKKHMQIFGSE 278 (281)
T ss_pred hHHHHHHHHHHHHHHHHhCCCCChHHHHHHHHHHHHHHHHHHHHHhCCC
Confidence 9988654211 000 112333455666677777777753
|
|
| >cd04732 HisA HisA | Back alignment and domain information |
|---|
Probab=97.63 E-value=0.00022 Score=65.95 Aligned_cols=69 Identities=35% Similarity=0.479 Sum_probs=55.7
Q ss_pred HHcCCcEEEEcCCCccCCCCCcchHHHHHHHHHHcCCCceEEEecCCCCHHHHHHHHHhCcCEEEecHHHHH
Q 017781 239 VQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFIGRPVVY 310 (366)
Q Consensus 239 ~~aGad~I~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~i~vi~~GGI~~~~dv~kalalGAd~V~igr~~l~ 310 (366)
.+.|+|.+.|..-.+. .......++.+.++.+.+ .+||++.|||++.+|+.+++..|||.|++|+..+.
T Consensus 39 ~~~g~d~l~v~dl~~~-~~~~~~~~~~i~~i~~~~--~~pv~~~GgI~~~e~~~~~~~~Gad~vvigs~~l~ 107 (234)
T cd04732 39 EEAGAKWLHVVDLDGA-KGGEPVNLELIEEIVKAV--GIPVQVGGGIRSLEDIERLLDLGVSRVIIGTAAVK 107 (234)
T ss_pred HHcCCCEEEEECCCcc-ccCCCCCHHHHHHHHHhc--CCCEEEeCCcCCHHHHHHHHHcCCCEEEECchHHh
Confidence 4578999998753221 112345678888998887 79999999999999999999999999999998754
|
Phosphoribosylformimino-5-aminoimidazole carboxamide ribonucleotide (ProFAR) isomerase catalyzes the fourth step in histidine biosynthesis, an isomerisation of the aminoaldose moiety of ProFAR to the aminoketose of PRFAR (N-(5'-phospho-D-1'-ribulosylformimino)-5-amino-1-(5''-phospho-ribosyl)-4-imidazolecarboxamide). In bacteria and archaea, ProFAR isomerase is encoded by the HisA gene. |
| >PRK09427 bifunctional indole-3-glycerol phosphate synthase/phosphoribosylanthranilate isomerase; Provisional | Back alignment and domain information |
|---|
Probab=97.62 E-value=0.00054 Score=69.70 Aligned_cols=75 Identities=13% Similarity=0.157 Sum_probs=52.7
Q ss_pred HHHHHHHHHHcCCCceEEEecCCCCHHHHHHHHHhCcCEEEecHHHHHHhhhcCHHHHHHHHHHHHHHHHHHHHHcCCCC
Q 017781 263 IMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFIGRPVVYSLAAEGEKGVRRVLEMLREEFELAMALSGCRS 342 (366)
Q Consensus 263 ~~~l~~i~~~~~~~i~vi~~GGI~~~~dv~kalalGAd~V~igr~~l~~l~~~G~~gv~~~~~~l~~el~~~m~~~G~~~ 342 (366)
...-.++...+++++.+|+.+||.+++|+..+ ..|||+|.||+.+|.+- . ....+..+ +......||.++
T Consensus 197 ~~~~~~l~~~ip~~~~~vseSGI~t~~d~~~~-~~~~davLiG~~lm~~~---d---~~~~~~~L---~~~~vKICGit~ 266 (454)
T PRK09427 197 LNRTRELAPLIPADVIVISESGIYTHAQVREL-SPFANGFLIGSSLMAED---D---LELAVRKL---ILGENKVCGLTR 266 (454)
T ss_pred HHHHHHHHhhCCCCcEEEEeCCCCCHHHHHHH-HhcCCEEEECHHHcCCC---C---HHHHHHHH---hccccccCCCCC
Confidence 34445556666778889999999999999885 45899999999998751 1 12222233 223457799998
Q ss_pred hhhhc
Q 017781 343 LKEIT 347 (366)
Q Consensus 343 l~el~ 347 (366)
.++..
T Consensus 267 ~eda~ 271 (454)
T PRK09427 267 PQDAK 271 (454)
T ss_pred HHHHH
Confidence 87775
|
|
| >PTZ00170 D-ribulose-5-phosphate 3-epimerase; Provisional | Back alignment and domain information |
|---|
Probab=97.61 E-value=0.0048 Score=57.22 Aligned_cols=63 Identities=22% Similarity=0.370 Sum_probs=41.6
Q ss_pred HHHHHHHHHHcCCCceEEEecCCCCHHHHHHHHHhCcCEEEecHHHHHHhhhcCHHHHHHHHHHHHHHHHH
Q 017781 263 IMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFIGRPVVYSLAAEGEKGVRRVLEMLREEFEL 333 (366)
Q Consensus 263 ~~~l~~i~~~~~~~i~vi~~GGI~~~~dv~kalalGAd~V~igr~~l~~l~~~G~~gv~~~~~~l~~el~~ 333 (366)
++-+.++++..+ .+.|.++|||+. +.+.++..+|||.+.+||++..+ . -..+.++.++++++.
T Consensus 161 ~~ki~~~~~~~~-~~~I~VdGGI~~-~ti~~~~~aGad~iVvGsaI~~a---~---d~~~~~~~i~~~~~~ 223 (228)
T PTZ00170 161 MPKVRELRKRYP-HLNIQVDGGINL-ETIDIAADAGANVIVAGSSIFKA---K---DRKQAIELLRESVQK 223 (228)
T ss_pred HHHHHHHHHhcc-cCeEEECCCCCH-HHHHHHHHcCCCEEEEchHHhCC---C---CHHHHHHHHHHHHHH
Confidence 344444444332 478999999965 67778889999999999985421 1 133455566665554
|
|
| >PLN02334 ribulose-phosphate 3-epimerase | Back alignment and domain information |
|---|
Probab=97.61 E-value=0.0026 Score=58.93 Aligned_cols=85 Identities=22% Similarity=0.289 Sum_probs=58.0
Q ss_pred CcEEEEcC-CCccC-CCCCcchHHHHHHHHHHcCCCceEEEecCCCCHHHHHHHHHhCcCEEEecHHHHHHhhhcCHHHH
Q 017781 243 AAGIIVSN-HGARQ-LDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFIGRPVVYSLAAEGEKGV 320 (366)
Q Consensus 243 ad~I~vs~-~gg~~-~~~~~~~~~~l~~i~~~~~~~i~vi~~GGI~~~~dv~kalalGAd~V~igr~~l~~l~~~G~~gv 320 (366)
+|.|.+.. +.|.. ....+..++.+.++++... ++||.++||| +.+++.+.+.+|||.+.+|++++.+ +-.
T Consensus 140 ~Dyi~~~~v~pg~~~~~~~~~~~~~i~~~~~~~~-~~~I~a~GGI-~~e~i~~l~~aGad~vvvgsai~~~------~d~ 211 (229)
T PLN02334 140 VDMVLVMSVEPGFGGQSFIPSMMDKVRALRKKYP-ELDIEVDGGV-GPSTIDKAAEAGANVIVAGSAVFGA------PDY 211 (229)
T ss_pred CCEEEEEEEecCCCccccCHHHHHHHHHHHHhCC-CCcEEEeCCC-CHHHHHHHHHcCCCEEEEChHHhCC------CCH
Confidence 89886532 22221 1234456677777776542 5799999999 7999999999999999999986432 123
Q ss_pred HHHHHHHHHHHHHHH
Q 017781 321 RRVLEMLREEFELAM 335 (366)
Q Consensus 321 ~~~~~~l~~el~~~m 335 (366)
...++.++++++..|
T Consensus 212 ~~~~~~l~~~~~~~~ 226 (229)
T PLN02334 212 AEVISGLRASVEKAA 226 (229)
T ss_pred HHHHHHHHHHHHHhh
Confidence 455666666666554
|
|
| >PRK13397 3-deoxy-7-phosphoheptulonate synthase; Provisional | Back alignment and domain information |
|---|
Probab=97.59 E-value=0.0073 Score=56.62 Aligned_cols=198 Identities=21% Similarity=0.254 Sum_probs=107.9
Q ss_pred ccceeEcCcccCCceEe-cccccccccCChhhHHHHHHHHHcCCceecC-CCCCCCHHHHhccCCCceEEEeeecCCHHH
Q 017781 60 DMNTTVLGFKISMPIMI-APTAMQKMAHPEGEYATARAASAAGTIMTLS-SWSTSSVEEVASTGPGIRFFQLYVYKDRNV 137 (366)
Q Consensus 60 d~st~l~g~~l~~Pi~i-Apm~~~~l~~~~~e~~la~aa~~~G~~~~vs-~~~~~~~e~i~~~~~~~~~~Qly~~~d~~~ 137 (366)
++-..+.+.....+.+| .|.+. -..+--..+|+.++++|+.+.-+ .+.+.+ .|+-|| +-..+-
T Consensus 3 ~~~~~~~~~~~~~~~~iaGPC~v---Es~e~~~~~a~~~~~~g~~~~r~g~~kpRt---------s~~sf~---G~G~~g 67 (250)
T PRK13397 3 DIMSDFQNKTCSKNNFIVGPCSI---ESYDHIRLAASSAKKLGYNYFRGGAYKPRT---------SAASFQ---GLGLQG 67 (250)
T ss_pred cceEEecCccCCCCcEEeccCcc---CCHHHHHHHHHHHHHcCCCEEEecccCCCC---------CCcccC---CCCHHH
Confidence 34444455555555444 45433 22333468999999999988864 232221 345565 233456
Q ss_pred HHHHHHHHHHcCCCEEEEecCCCCCcchhHHHhhhcCCCCccccccccccccCCCccccchhhHHHhhhccCCC-CCHHH
Q 017781 138 VAQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLTLKNFQGLDLGKMDEANDSGLAAYVAGQIDRS-LSWKD 216 (366)
Q Consensus 138 ~~~~l~ra~~~G~~ai~vtvd~p~~g~r~~d~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~-~~~~~ 216 (366)
...+.+.+++.|...+- ++-.+ +.-+....+ ++ + +. .+... ...+.
T Consensus 68 l~~L~~~~~~~Gl~~~T-ev~d~----~~v~~~~e~-vd----------i----------------lq-Igs~~~~n~~L 114 (250)
T PRK13397 68 IRYLHEVCQEFGLLSVS-EIMSE----RQLEEAYDY-LD----------V----------------IQ-VGARNMQNFEF 114 (250)
T ss_pred HHHHHHHHHHcCCCEEE-eeCCH----HHHHHHHhc-CC----------E----------------EE-ECcccccCHHH
Confidence 66677777788876653 21111 111111110 00 0 00 00011 13455
Q ss_pred HHHHHHhcCCCEEEEec--cCHHH--------HHcCCcEEEEcCCCccCCCCC---cchHHHHHHHHHHcCCCceEEEe-
Q 017781 217 VKWLQTITKLPILVKGV--LTAED--------VQAGAAGIIVSNHGARQLDYV---PATIMALEEVVKATQGRIPVFLD- 282 (366)
Q Consensus 217 i~~lr~~~~~pv~vK~v--~~~~d--------~~aGad~I~vs~~gg~~~~~~---~~~~~~l~~i~~~~~~~i~vi~~- 282 (366)
++.+.+ +++||++|-. .+++| .+.|..-|++--+|-+..... ...+..++.+++.. .+|||++
T Consensus 115 L~~va~-tgkPVilk~G~~~t~~e~~~A~e~i~~~Gn~~i~L~eRg~~~Y~~~~~n~~dl~ai~~lk~~~--~lPVivd~ 191 (250)
T PRK13397 115 LKTLSH-IDKPILFKRGLMATIEEYLGALSYLQDTGKSNIILCERGVRGYDVETRNMLDIMAVPIIQQKT--DLPIIVDV 191 (250)
T ss_pred HHHHHc-cCCeEEEeCCCCCCHHHHHHHHHHHHHcCCCeEEEEccccCCCCCccccccCHHHHHHHHHHh--CCCeEECC
Confidence 666655 5899999955 57766 667876555443232222111 34556677777655 6899997
Q ss_pred ---cCCCC--HHHHHHHHHhCcCEEEecHHH
Q 017781 283 ---GGVRR--GTDVFKALALGASGIFIGRPV 308 (366)
Q Consensus 283 ---GGI~~--~~dv~kalalGAd~V~igr~~ 308 (366)
+|.|. ..-...|+++|||+++|-+-+
T Consensus 192 SHs~G~r~~v~~~a~AAvA~GAdGl~IE~H~ 222 (250)
T PRK13397 192 SHSTGRRDLLLPAAKIAKAVGANGIMMEVHP 222 (250)
T ss_pred CCCCcccchHHHHHHHHHHhCCCEEEEEecC
Confidence 44433 133557888999999998754
|
|
| >CHL00162 thiG thiamin biosynthesis protein G; Validated | Back alignment and domain information |
|---|
Probab=97.57 E-value=0.00031 Score=65.25 Aligned_cols=69 Identities=22% Similarity=0.442 Sum_probs=54.1
Q ss_pred HHcCCcEEEEcCCC-ccCCCCCcchHHHHHHHHHHcCCCceEEEecCCCCHHHHHHHHHhCcCEEEecHHHHHH
Q 017781 239 VQAGAAGIIVSNHG-ARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFIGRPVVYS 311 (366)
Q Consensus 239 ~~aGad~I~vs~~g-g~~~~~~~~~~~~l~~i~~~~~~~i~vi~~GGI~~~~dv~kalalGAd~V~igr~~l~~ 311 (366)
.++||..|---+.. |+ ..|......|..+++.. ++||+.++||.+++|+.+|+++|||+|++.+.+..+
T Consensus 155 ed~Gc~aVMPlgsPIGS--g~Gl~n~~~l~~i~e~~--~vpVivdAGIgt~sDa~~AmElGaDgVL~nSaIakA 224 (267)
T CHL00162 155 EDIGCATVMPLGSPIGS--GQGLQNLLNLQIIIENA--KIPVIIDAGIGTPSEASQAMELGASGVLLNTAVAQA 224 (267)
T ss_pred HHcCCeEEeeccCcccC--CCCCCCHHHHHHHHHcC--CCcEEEeCCcCCHHHHHHHHHcCCCEEeecceeecC
Confidence 99999988743321 11 12455667777777665 799999999999999999999999999999988643
|
|
| >PLN02460 indole-3-glycerol-phosphate synthase | Back alignment and domain information |
|---|
Probab=97.56 E-value=0.0026 Score=61.95 Aligned_cols=183 Identities=17% Similarity=0.243 Sum_probs=98.0
Q ss_pred HHHhccCCCceEEEeeecCCHHHHHHHHHHHHHcCCCEEEEecCCCCCcchhHHHhh---h-cCCCCccccccccccccC
Q 017781 115 EEVASTGPGIRFFQLYVYKDRNVVAQLVRRAERAGFKAIALTVDTPRLGRREADIKN---R-FTLPPFLTLKNFQGLDLG 190 (366)
Q Consensus 115 e~i~~~~~~~~~~Qly~~~d~~~~~~~l~ra~~~G~~ai~vtvd~p~~g~r~~d~~~---~-~~~p~~~~~~~~~~~~~~ 190 (366)
.|++.+.|...++. ..-|+ .++.+.-++.|+.+|=|-.|....+....+++. . ..+|- -.+.+- +...
T Consensus 123 AEvKrASPSkG~I~--~~~dp---~~iA~~Ye~~GA~aISVLTd~~~F~Gs~e~L~~vr~~~v~lPv--LrKDFI-ID~y 194 (338)
T PLN02460 123 AEVKKASPSRGVLR--ENFDP---VEIAQAYEKGGAACLSVLTDEKYFQGSFENLEAIRNAGVKCPL--LCKEFI-VDAW 194 (338)
T ss_pred eeeccCCCCCCccC--CCCCH---HHHHHHHHhCCCcEEEEecCcCcCCCCHHHHHHHHHcCCCCCE--eecccc-CCHH
Confidence 45555556333332 12244 345556678899999888887777666655543 2 33331 111110 0000
Q ss_pred CCccccchhhHHHhhhccCCCCCHHHHHHHHH---hcCCCEEEEeccCHHH----HHc-CCcEEEEcCCCccCCCCCcch
Q 017781 191 KMDEANDSGLAAYVAGQIDRSLSWKDVKWLQT---ITKLPILVKGVLTAED----VQA-GAAGIIVSNHGARQLDYVPAT 262 (366)
Q Consensus 191 ~~~~~~~~~~~~~~~~~~d~~~~~~~i~~lr~---~~~~pv~vK~v~~~~d----~~a-Gad~I~vs~~gg~~~~~~~~~ 262 (366)
.+.+.+..|+...+. ...-++-+.++.+.+ ..+.-++| .+-+.++ .++ |++.|-|.|+.=..+...
T Consensus 195 QI~eAr~~GADAVLL--IaaiL~~~~L~~l~~~A~~LGme~LV-EVH~~~ElerAl~~~ga~iIGINNRdL~Tf~vD--- 268 (338)
T PLN02460 195 QIYYARSKGADAILL--IAAVLPDLDIKYMLKICKSLGMAALI-EVHDEREMDRVLGIEGVELIGINNRSLETFEVD--- 268 (338)
T ss_pred HHHHHHHcCCCcHHH--HHHhCCHHHHHHHHHHHHHcCCeEEE-EeCCHHHHHHHHhcCCCCEEEEeCCCCCcceEC---
Confidence 011111111100000 001122223444333 34555444 4556665 776 999888877543222222
Q ss_pred HHHHHHHHH-----Hc-CCCceEEEecCCCCHHHHHHHHHhCcCEEEecHHHHHH
Q 017781 263 IMALEEVVK-----AT-QGRIPVFLDGGVRRGTDVFKALALGASGIFIGRPVVYS 311 (366)
Q Consensus 263 ~~~l~~i~~-----~~-~~~i~vi~~GGI~~~~dv~kalalGAd~V~igr~~l~~ 311 (366)
++.-.++.. .+ +.++.+++.+||++++|+.....+|||+|.||..+|..
T Consensus 269 l~~t~~L~~~~~~~~i~~~~~~~VsESGI~t~~Dv~~l~~~GadAvLVGEsLMr~ 323 (338)
T PLN02460 269 ISNTKKLLEGERGEQIREKGIIVVGESGLFTPDDVAYVQNAGVKAVLVGESLVKQ 323 (338)
T ss_pred HHHHHHHhhhccccccCCCCeEEEECCCCCCHHHHHHHHHCCCCEEEECHHHhCC
Confidence 222233333 23 23567899999999999999999999999999999874
|
|
| >cd00405 PRAI Phosphoribosylanthranilate isomerase (PRAI) catalyzes the fourth step of the tryptophan biosynthesis, the conversion of N-(5'- phosphoribosyl)-anthranilate (PRA) to 1-(o-carboxyphenylamino)- 1-deoxyribulose 5-phosphate (CdRP) | Back alignment and domain information |
|---|
Probab=97.54 E-value=0.0092 Score=54.12 Aligned_cols=92 Identities=21% Similarity=0.208 Sum_probs=63.5
Q ss_pred HHHHHHHHHhcCCCEEEEe-ccCHHH------HHcCCcEEEEcCCCccCC--CCCcchHHHHHHHHHHcCCCceEEEecC
Q 017781 214 WKDVKWLQTITKLPILVKG-VLTAED------VQAGAAGIIVSNHGARQL--DYVPATIMALEEVVKATQGRIPVFLDGG 284 (366)
Q Consensus 214 ~~~i~~lr~~~~~pv~vK~-v~~~~d------~~aGad~I~vs~~gg~~~--~~~~~~~~~l~~i~~~~~~~i~vi~~GG 284 (366)
.+.++.+|+..+.+++... +.+..+ ...|+|++.+....+... .+.+..|+.+.++. . ++|+++.||
T Consensus 85 ~~~~~~l~~~~~~~~i~~i~~~~~~~~~~~~~~~~~aD~il~dt~~~~~~Gg~g~~~~~~~l~~~~--~--~~PvilaGG 160 (203)
T cd00405 85 PEYCAQLRARLGLPVIKAIRVKDEEDLEKAAAYAGEVDAILLDSKSGGGGGGTGKTFDWSLLRGLA--S--RKPVILAGG 160 (203)
T ss_pred HHHHHHHHhhcCCcEEEEEecCChhhHHHhhhccccCCEEEEcCCCCCCCCCCcceEChHHhhccc--c--CCCEEEECC
Confidence 4567777776666655322 222222 447899998876422111 12345677777665 3 789999999
Q ss_pred CCCHHHHHHHHHhC-cCEEEecHHHHH
Q 017781 285 VRRGTDVFKALALG-ASGIFIGRPVVY 310 (366)
Q Consensus 285 I~~~~dv~kalalG-Ad~V~igr~~l~ 310 (366)
| +++.+.+++..| +++|-+.+.+..
T Consensus 161 I-~~~Nv~~~i~~~~~~gvdv~S~ie~ 186 (203)
T cd00405 161 L-TPDNVAEAIRLVRPYGVDVSSGVET 186 (203)
T ss_pred C-ChHHHHHHHHhcCCCEEEcCCcccC
Confidence 9 999999999999 999999988753
|
Most PRAIs are monomeric, monofunctional and thermolabile, but in some thermophile organisms PRAI is dimeric for reasons of stability and in others it is fused to other components of the tryptophan biosynthesis pathway to form multifunctional enzymes. |
| >PRK04128 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Provisional | Back alignment and domain information |
|---|
Probab=97.53 E-value=0.00091 Score=62.06 Aligned_cols=36 Identities=31% Similarity=0.478 Sum_probs=33.7
Q ss_pred CceEEEecCCCCHHHHHHHHHhCcCEEEecHHHHHH
Q 017781 276 RIPVFLDGGVRRGTDVFKALALGASGIFIGRPVVYS 311 (366)
Q Consensus 276 ~i~vi~~GGI~~~~dv~kalalGAd~V~igr~~l~~ 311 (366)
++|||++|||++.+|+.++..+|+++|.+|++|.++
T Consensus 182 ~~pviasGGv~~~~Dl~~l~~~g~~gvivg~al~~g 217 (228)
T PRK04128 182 DEEFIYAGGVSSAEDVKKLAEIGFSGVIIGKALYEG 217 (228)
T ss_pred CCCEEEECCCCCHHHHHHHHHCCCCEEEEEhhhhcC
Confidence 689999999999999999999999999999998764
|
|
| >cd00564 TMP_TenI Thiamine monophosphate synthase (TMP synthase)/TenI | Back alignment and domain information |
|---|
Probab=97.50 E-value=0.0013 Score=58.47 Aligned_cols=69 Identities=22% Similarity=0.224 Sum_probs=52.7
Q ss_pred HHcCCcEEEEcCCC--cc-CCCCCcchHHHHHHHHHHcCCCceEEEecCCCCHHHHHHHHHhCcCEEEecHHHHH
Q 017781 239 VQAGAAGIIVSNHG--AR-QLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFIGRPVVY 310 (366)
Q Consensus 239 ~~aGad~I~vs~~g--g~-~~~~~~~~~~~l~~i~~~~~~~i~vi~~GGI~~~~dv~kalalGAd~V~igr~~l~ 310 (366)
.+.|+|.|.++... .. +..+.+..++.+.++++.. ++||++.|||. .+++.+++.+||++|.+|+.++.
T Consensus 112 ~~~g~d~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~pv~a~GGi~-~~~i~~~~~~Ga~~i~~g~~i~~ 183 (196)
T cd00564 112 EELGADYVGFGPVFPTPTKPGAGPPLGLELLREIAELV--EIPVVAIGGIT-PENAAEVLAAGADGVAVISAITG 183 (196)
T ss_pred hhcCCCEEEECCccCCCCCCCCCCCCCHHHHHHHHHhC--CCCEEEECCCC-HHHHHHHHHcCCCEEEEehHhhc
Confidence 77899999987532 11 1111445677788877664 79999999995 79999999999999999998753
|
TMP synthase catalyzes an important step in the thiamine biosynthesis pathway, the substitution of the pyrophosphate of 2-methyl-4-amino-5- hydroxymethylpyrimidine pyrophosphate by 4-methyl-5- (beta-hydroxyethyl) thiazole phosphate to yield thiamine phosphate. TenI is a enzymatically inactive regulatory protein involved in the regulation of several extracellular enzymes. This superfamily also contains other enzymatically inactive proteins with unknown functions. |
| >PF01081 Aldolase: KDPG and KHG aldolase; InterPro: IPR000887 4-Hydroxy-2-oxoglutarate aldolase (4 | Back alignment and domain information |
|---|
Probab=97.50 E-value=0.00069 Score=61.31 Aligned_cols=169 Identities=18% Similarity=0.239 Sum_probs=98.8
Q ss_pred EEEeeecCCHHHHHHHHHHHHHcCCCEEEEecCCCCCcchhHHHhhhcCCCCccccccccccccCCCccccchhhHHHhh
Q 017781 126 FFQLYVYKDRNVVAQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLTLKNFQGLDLGKMDEANDSGLAAYVA 205 (366)
Q Consensus 126 ~~Qly~~~d~~~~~~~l~ra~~~G~~ai~vtvd~p~~g~r~~d~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 205 (366)
.+-+....+.+...++++.+.+.|.+.+-||.++|..-.-.+.++..+ |. +... ..........+........++.
T Consensus 10 iiaVir~~~~~~a~~~~~al~~gGi~~iEiT~~t~~a~~~I~~l~~~~--p~-~~vG-AGTV~~~e~a~~a~~aGA~Fiv 85 (196)
T PF01081_consen 10 IIAVIRGDDPEDAVPIAEALIEGGIRAIEITLRTPNALEAIEALRKEF--PD-LLVG-AGTVLTAEQAEAAIAAGAQFIV 85 (196)
T ss_dssp EEEEETTSSGGGHHHHHHHHHHTT--EEEEETTSTTHHHHHHHHHHHH--TT-SEEE-EES--SHHHHHHHHHHT-SEEE
T ss_pred EEEEEEcCCHHHHHHHHHHHHHCCCCEEEEecCCccHHHHHHHHHHHC--CC-CeeE-EEeccCHHHHHHHHHcCCCEEE
Confidence 344455677888888888889999999999999986433334444444 22 1110 0000000000000111111222
Q ss_pred hccCCCCCHHHHHHHHHhcCCCEEEEeccCHHH----HHcCCcEEEEcCCCccCCCCCcchHHHHHHHHHHcCCCceEEE
Q 017781 206 GQIDRSLSWKDVKWLQTITKLPILVKGVLTAED----VQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFL 281 (366)
Q Consensus 206 ~~~d~~~~~~~i~~lr~~~~~pv~vK~v~~~~d----~~aGad~I~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~i~vi~ 281 (366)
.|.++-+.+++.++. ++| ++=|++|+.| .++|+|.|.+.-.+ .-+|+ ..++.++.-+ .+++++.
T Consensus 86 ---SP~~~~~v~~~~~~~-~i~-~iPG~~TptEi~~A~~~G~~~vK~FPA~---~~GG~---~~ik~l~~p~-p~~~~~p 153 (196)
T PF01081_consen 86 ---SPGFDPEVIEYAREY-GIP-YIPGVMTPTEIMQALEAGADIVKLFPAG---ALGGP---SYIKALRGPF-PDLPFMP 153 (196)
T ss_dssp ---ESS--HHHHHHHHHH-TSE-EEEEESSHHHHHHHHHTT-SEEEETTTT---TTTHH---HHHHHHHTTT-TT-EEEE
T ss_pred ---CCCCCHHHHHHHHHc-CCc-ccCCcCCHHHHHHHHHCCCCEEEEecch---hcCcH---HHHHHHhccC-CCCeEEE
Confidence 255667778877764 776 5567889887 99999999986532 11224 3444444334 3799999
Q ss_pred ecCCCCHHHHHHHHHhCcCEEEecHHHHHH
Q 017781 282 DGGVRRGTDVFKALALGASGIFIGRPVVYS 311 (366)
Q Consensus 282 ~GGI~~~~dv~kalalGAd~V~igr~~l~~ 311 (366)
.|||.- +++...+.+|+.+|++|+.+...
T Consensus 154 tGGV~~-~N~~~~l~ag~~~vg~Gs~L~~~ 182 (196)
T PF01081_consen 154 TGGVNP-DNLAEYLKAGAVAVGGGSWLFPK 182 (196)
T ss_dssp BSS--T-TTHHHHHTSTTBSEEEESGGGSH
T ss_pred cCCCCH-HHHHHHHhCCCEEEEECchhcCH
Confidence 999975 79999999999999999977543
|
1.3.16 from EC) (KHG-aldolase) catalyzes the interconversion of 4-hydroxy-2-oxoglutarate into pyruvate and glyoxylate. Phospho-2-dehydro-3-deoxygluconate aldolase (4.1.2.14 from EC) (KDPG-aldolase) catalyzes the interconversion of 6-phospho-2-dehydro-3-deoxy-D-gluconate into pyruvate and glyceraldehyde 3-phosphate. These two enzymes are structurally and functionally related []. They are both homotrimeric proteins of approximately 220 amino-acid residues. They are class I aldolases whose catalytic mechanism involves the formation of a Schiff-base intermediate between the substrate and the epsilon-amino group of a lysine residue. In both enzymes, an arginine is required for catalytic activity.; GO: 0003824 catalytic activity, 0008152 metabolic process; PDB: 3VCR_A 1FQ0_A 1EUN_A 1EUA_B 1FWR_A 2C0A_B 1WBH_A 1WAU_A 2YW3_B 2YW4_A .... |
| >PRK07226 fructose-bisphosphate aldolase; Provisional | Back alignment and domain information |
|---|
Probab=97.47 E-value=0.0013 Score=62.45 Aligned_cols=61 Identities=26% Similarity=0.495 Sum_probs=48.1
Q ss_pred HHcCCcEEEEcCCCccCCCCCcchHHHHHHHHHHcCCCceEEEecCCC--CHHHHHHHH----HhCcCEEEecHHHHH
Q 017781 239 VQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVR--RGTDVFKAL----ALGASGIFIGRPVVY 310 (366)
Q Consensus 239 ~~aGad~I~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~i~vi~~GGI~--~~~dv~kal----alGAd~V~igr~~l~ 310 (366)
.++|||+|..+-.+ ..+.+.++.+.. ++||+++|||+ +.+++.+.+ .+||+++.+||.++.
T Consensus 170 ~e~GAD~vKt~~~~---------~~~~l~~~~~~~--~ipV~a~GGi~~~~~~~~l~~v~~~~~aGA~Gis~gr~i~~ 236 (267)
T PRK07226 170 AELGADIVKTNYTG---------DPESFREVVEGC--PVPVVIAGGPKTDTDREFLEMVRDAMEAGAAGVAVGRNVFQ 236 (267)
T ss_pred HHHCCCEEeeCCCC---------CHHHHHHHHHhC--CCCEEEEeCCCCCCHHHHHHHHHHHHHcCCcEEehhhhhhc
Confidence 78999999886321 346677766654 79999999999 777777664 899999999999864
|
|
| >PRK14024 phosphoribosyl isomerase A; Provisional | Back alignment and domain information |
|---|
Probab=97.43 E-value=0.00068 Score=63.38 Aligned_cols=68 Identities=28% Similarity=0.269 Sum_probs=54.0
Q ss_pred HHcCCcEEEEcCCCccCCCCCcchHHHHHHHHHHcCCCceEEEecCCCCHHHHHHHHHhCcCEEEecHHHHH
Q 017781 239 VQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFIGRPVVY 310 (366)
Q Consensus 239 ~~aGad~I~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~i~vi~~GGI~~~~dv~kalalGAd~V~igr~~l~ 310 (366)
.+.|+|.+++-.--+. .+.....+.+.++.+.+ .+||.+.|||||.+|+.+++.+||+.|.+|+..+.
T Consensus 42 ~~~g~~~l~ivDLd~~--~g~~~n~~~i~~i~~~~--~~pv~vgGGirs~edv~~~l~~Ga~kvviGs~~l~ 109 (241)
T PRK14024 42 QRDGAEWIHLVDLDAA--FGRGSNRELLAEVVGKL--DVKVELSGGIRDDESLEAALATGCARVNIGTAALE 109 (241)
T ss_pred HHCCCCEEEEEecccc--CCCCccHHHHHHHHHHc--CCCEEEcCCCCCHHHHHHHHHCCCCEEEECchHhC
Confidence 4578887775432111 12345678999999888 79999999999999999999999999999998764
|
|
| >PF01791 DeoC: DeoC/LacD family aldolase; InterPro: IPR002915 This family includes the enzyme deoxyribose-phosphate aldolase, which is involved in nucleotide metabolism | Back alignment and domain information |
|---|
Probab=97.41 E-value=0.00096 Score=62.05 Aligned_cols=91 Identities=23% Similarity=0.356 Sum_probs=59.1
Q ss_pred HHHHHHHHh---cCCCEEEEeccCH-H-------H---------HHcCCcEEEEcCCCccCCCCCcchHHHHHHHHHHcC
Q 017781 215 KDVKWLQTI---TKLPILVKGVLTA-E-------D---------VQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQ 274 (366)
Q Consensus 215 ~~i~~lr~~---~~~pv~vK~v~~~-~-------d---------~~aGad~I~vs~~gg~~~~~~~~~~~~l~~i~~~~~ 274 (366)
+.++++++. +++|+++=..++. + + .++|+|+|..+..+. ........+.+.++.+..
T Consensus 112 ~~i~~v~~~~~~~gl~vIlE~~l~~~~~~~~~~~~~I~~a~ria~e~GaD~vKt~tg~~--~~~t~~~~~~~~~~~~~~- 188 (236)
T PF01791_consen 112 EEIAAVVEECHKYGLKVILEPYLRGEEVADEKKPDLIARAARIAAELGADFVKTSTGKP--VGATPEDVELMRKAVEAA- 188 (236)
T ss_dssp HHHHHHHHHHHTSEEEEEEEECECHHHBSSTTHHHHHHHHHHHHHHTT-SEEEEE-SSS--SCSHHHHHHHHHHHHHTH-
T ss_pred HHHHHHHHHHhcCCcEEEEEEecCchhhcccccHHHHHHHHHHHHHhCCCEEEecCCcc--ccccHHHHHHHHHHHHhc-
Confidence 344444443 4788888754322 2 1 899999999876411 111223344455555433
Q ss_pred CCce----EEEecCC------CCHHHHHHHHHhCc--CEEEecHHHH
Q 017781 275 GRIP----VFLDGGV------RRGTDVFKALALGA--SGIFIGRPVV 309 (366)
Q Consensus 275 ~~i~----vi~~GGI------~~~~dv~kalalGA--d~V~igr~~l 309 (366)
.+| |.++||| ++.+++.+++.+|| .++..||.+.
T Consensus 189 -~~p~~~~Vk~sGGi~~~~~~~~l~~a~~~i~aGa~~~G~~~Gr~i~ 234 (236)
T PF01791_consen 189 -PVPGKVGVKASGGIDAEDFLRTLEDALEFIEAGADRIGTSSGRNIW 234 (236)
T ss_dssp -SSTTTSEEEEESSSSHHHHHHSHHHHHHHHHTTHSEEEEEEHHHHH
T ss_pred -CCCcceEEEEeCCCChHHHHHHHHHHHHHHHcCChhHHHHHHHHHH
Confidence 456 9999999 99999999999999 8888888653
|
|
| >TIGR00875 fsa_talC_mipB fructose-6-phosphate aldolase, TalC/MipB family | Back alignment and domain information |
|---|
Probab=97.40 E-value=0.033 Score=51.11 Aligned_cols=95 Identities=25% Similarity=0.181 Sum_probs=71.8
Q ss_pred HHHHHHHHhcCCCEEEEeccCHHH----HHcCCcEEEEcCCCccCCCCCcchHHHHHHHHHHc---CCCceEEEecCCCC
Q 017781 215 KDVKWLQTITKLPILVKGVLTAED----VQAGAAGIIVSNHGARQLDYVPATIMALEEVVKAT---QGRIPVFLDGGVRR 287 (366)
Q Consensus 215 ~~i~~lr~~~~~pv~vK~v~~~~d----~~aGad~I~vs~~gg~~~~~~~~~~~~l~~i~~~~---~~~i~vi~~GGI~~ 287 (366)
+.++.|++. ++++-+=.+.+.+. .++|++.|.. .-||-.+.+...++.+.++.+.+ +.+..|++.+ +|+
T Consensus 92 ~A~~~L~~~-Gi~v~~T~vfs~~Qa~~Aa~aGa~yisp--yvgRi~d~g~dg~~~v~~~~~~~~~~~~~tkIlaAS-~r~ 167 (213)
T TIGR00875 92 KAVKILKKE-GIKTNVTLVFSAAQALLAAKAGATYVSP--FVGRLDDIGGDGMKLIEEVKTIFENHAPDTEVIAAS-VRH 167 (213)
T ss_pred HHHHHHHHC-CCceeEEEecCHHHHHHHHHcCCCEEEe--ecchHHHcCCCHHHHHHHHHHHHHHcCCCCEEEEec-cCC
Confidence 445566553 89999999999887 8999997753 33554455556677777776654 2366777755 999
Q ss_pred HHHHHHHHHhCcCEEEecHHHHHHhh
Q 017781 288 GTDVFKALALGASGIFIGRPVVYSLA 313 (366)
Q Consensus 288 ~~dv~kalalGAd~V~igr~~l~~l~ 313 (366)
..++.+++.+|+|.|-+.-.++..+.
T Consensus 168 ~~~v~~~~~~G~d~vTip~~vl~~l~ 193 (213)
T TIGR00875 168 PRHVLEAALIGADIATMPLDVMQQLF 193 (213)
T ss_pred HHHHHHHHHcCCCEEEcCHHHHHHHH
Confidence 99999999999999999999888764
|
This model represents a family that includes the E. coli transaldolase homologs TalC and MipB, both shown to be fructose-6-phosphate aldolases rather than transaldolases as previously thought. It is related to but distinct from the transaldolase family of E. coli TalA and TalB. The member from Bacillus subtilis becomes phosphorylated during early stationary phase but not during exponential growth. |
| >TIGR01859 fruc_bis_ald_ fructose-1,6-bisphosphate aldolase, class II, various bacterial and amitochondriate protist | Back alignment and domain information |
|---|
Probab=97.40 E-value=0.059 Score=51.62 Aligned_cols=103 Identities=25% Similarity=0.343 Sum_probs=72.2
Q ss_pred CHHH----H-HcCCcEEEEcC---CCccCCCCCcchHHHHHHHHHHcCCCceEEEec--CCCCHHHHHHHHHhCcCEEEe
Q 017781 235 TAED----V-QAGAAGIIVSN---HGARQLDYVPATIMALEEVVKATQGRIPVFLDG--GVRRGTDVFKALALGASGIFI 304 (366)
Q Consensus 235 ~~~d----~-~aGad~I~vs~---~gg~~~~~~~~~~~~l~~i~~~~~~~i~vi~~G--GI~~~~dv~kalalGAd~V~i 304 (366)
++++ . +.|+|.+.++. ||-. .....-.++.|.++++.+ ++|+++=| ||. .+++.+++.+|++.|-+
T Consensus 154 ~~eea~~f~~~tgvD~Lavs~Gt~hg~~-~~~~~l~~e~L~~i~~~~--~iPlv~hGgSGi~-~e~i~~~i~~Gi~kiNv 229 (282)
T TIGR01859 154 DPDEAEQFVKETGVDYLAAAIGTSHGKY-KGEPGLDFERLKEIKELT--NIPLVLHGASGIP-EEQIKKAIKLGIAKINI 229 (282)
T ss_pred CHHHHHHHHHHHCcCEEeeccCcccccc-CCCCccCHHHHHHHHHHh--CCCEEEECCCCCC-HHHHHHHHHcCCCEEEE
Confidence 5555 4 48999999762 4321 112234678899999988 79999999 984 67899999999999999
Q ss_pred cHHHHHHhhh-------cC------HHHHHHHHHHHHHHHHHHHHHcCCC
Q 017781 305 GRPVVYSLAA-------EG------EKGVRRVLEMLREEFELAMALSGCR 341 (366)
Q Consensus 305 gr~~l~~l~~-------~G------~~gv~~~~~~l~~el~~~m~~~G~~ 341 (366)
++-+..+... .. ..-.....+.+.+..+..|+.+|..
T Consensus 230 ~T~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~gs~ 279 (282)
T TIGR01859 230 DTDCRIAFTAAIRKVLTEKKDEYDPRKILGPAREAIKETVKEKMRLFGSA 279 (282)
T ss_pred CcHHHHHHHHHHHHHHHhCCCcCCHHHHHHHHHHHHHHHHHHHHHHhCCC
Confidence 9987554211 00 1223445567778888888888754
|
This model represents of one of several subtypes of the class II fructose-1,6-bisphosphate aldolase, an enzyme of glycolysis. The subtypes are split into several models to allow separation of a family of tagatose bisphosphate aldolases. This form is found in Gram-positive bacteria, a variety of Gram-negative, and in amitochondriate protists. The class II enzymes share homology with tagatose bisphosphate aldolase but not with class I aldolase. |
| >COG0036 Rpe Pentose-5-phosphate-3-epimerase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=97.38 E-value=0.014 Score=53.44 Aligned_cols=149 Identities=23% Similarity=0.328 Sum_probs=90.2
Q ss_pred cCCHHHHHHHHHHHHHcCCCEEEEecCCCCCcchhHHHhhhcCCCCccccccccccccCCCccccchhhHHHhhhccCCC
Q 017781 132 YKDRNVVAQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLTLKNFQGLDLGKMDEANDSGLAAYVAGQIDRS 211 (366)
Q Consensus 132 ~~d~~~~~~~l~ra~~~G~~ai~vtvd~p~~g~r~~d~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~ 211 (366)
..|.....+.+++++++|++.+ ++|. + -..| +| +-.
T Consensus 12 saD~~~l~~el~~~~~agad~i--H~DV--M-------DghF-VP--------------------------------NiT 47 (220)
T COG0036 12 SADFARLGEELKALEAAGADLI--HIDV--M-------DGHF-VP--------------------------------NIT 47 (220)
T ss_pred hCCHhHHHHHHHHHHHcCCCEE--EEec--c-------CCCc-CC--------------------------------Ccc
Confidence 4677788899999999999886 4442 0 0001 11 012
Q ss_pred CCHHHHHHHHHhcCCCEEEEe-ccCHHH-----HHcCCcEEEEcCCCc----c--------------------C------
Q 017781 212 LSWKDVKWLQTITKLPILVKG-VLTAED-----VQAGAAGIIVSNHGA----R--------------------Q------ 255 (366)
Q Consensus 212 ~~~~~i~~lr~~~~~pv~vK~-v~~~~d-----~~aGad~I~vs~~gg----~--------------------~------ 255 (366)
+....++++|+.++.|+=|=. +.+++. .++|||.|.++---. + .
T Consensus 48 fGp~~v~~l~~~t~~p~DvHLMV~~p~~~i~~fa~agad~It~H~E~~~~~~r~i~~Ik~~G~kaGv~lnP~Tp~~~i~~ 127 (220)
T COG0036 48 FGPPVVKALRKITDLPLDVHLMVENPDRYIEAFAKAGADIITFHAEATEHIHRTIQLIKELGVKAGLVLNPATPLEALEP 127 (220)
T ss_pred cCHHHHHHHhhcCCCceEEEEecCCHHHHHHHHHHhCCCEEEEEeccCcCHHHHHHHHHHcCCeEEEEECCCCCHHHHHH
Confidence 234567777777777766664 345544 777888887753211 0 0
Q ss_pred ----C-----------CCC----cchHHHHHHHHHHcCC--CceEEEecCCCCHHHHHHHHHhCcCEEEecHHHHHHhhh
Q 017781 256 ----L-----------DYV----PATIMALEEVVKATQG--RIPVFLDGGVRRGTDVFKALALGASGIFIGRPVVYSLAA 314 (366)
Q Consensus 256 ----~-----------~~~----~~~~~~l~~i~~~~~~--~i~vi~~GGI~~~~dv~kalalGAd~V~igr~~l~~l~~ 314 (366)
. .+| +..++-+.++++.... ++-|-+||||. .+-+-++.++|||.+..|+ .+|.
T Consensus 128 ~l~~vD~VllMsVnPGfgGQ~Fi~~~l~Ki~~lr~~~~~~~~~~IeVDGGI~-~~t~~~~~~AGad~~VaGS-alF~--- 202 (220)
T COG0036 128 VLDDVDLVLLMSVNPGFGGQKFIPEVLEKIRELRAMIDERLDILIEVDGGIN-LETIKQLAAAGADVFVAGS-ALFG--- 202 (220)
T ss_pred HHhhCCEEEEEeECCCCcccccCHHHHHHHHHHHHHhcccCCeEEEEeCCcC-HHHHHHHHHcCCCEEEEEE-EEeC---
Confidence 0 122 3355666666666532 57799999994 4556667779999999999 4453
Q ss_pred cCHHHHHHHHHHHHHHH
Q 017781 315 EGEKGVRRVLEMLREEF 331 (366)
Q Consensus 315 ~G~~gv~~~~~~l~~el 331 (366)
+.+ ....++.++.++
T Consensus 203 -~~d-~~~~i~~~~~~~ 217 (220)
T COG0036 203 -ADD-YKATIRELRGEL 217 (220)
T ss_pred -Ccc-HHHHHHHHHHHh
Confidence 222 344455555443
|
|
| >COG0106 HisA Phosphoribosylformimino-5-aminoimidazole carboxamide ribonucleotide (ProFAR) isomerase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=97.37 E-value=0.0026 Score=58.96 Aligned_cols=96 Identities=24% Similarity=0.266 Sum_probs=69.3
Q ss_pred CHHHHHHHHHhcCCCEEEEec----------------cCHHH-----HHcCCcEEEEcCCCccCCCCCcchHHHHHHHHH
Q 017781 213 SWKDVKWLQTITKLPILVKGV----------------LTAED-----VQAGAAGIIVSNHGARQLDYVPATIMALEEVVK 271 (366)
Q Consensus 213 ~~~~i~~lr~~~~~pv~vK~v----------------~~~~d-----~~aGad~I~vs~~gg~~~~~~~~~~~~l~~i~~ 271 (366)
.++.++++.+.++-.|+|-.= .++.+ .+.|+..|.+..-.--.. ..-+.++.+.++++
T Consensus 110 ~p~~v~~~~~~~g~rivv~lD~r~g~vav~GW~e~s~~~~~~l~~~~~~~g~~~ii~TdI~~DGt-l~G~n~~l~~~l~~ 188 (241)
T COG0106 110 NPDLVKELCEEYGDRIVVALDARDGKVAVSGWQEDSGVELEELAKRLEEVGLAHILYTDISRDGT-LSGPNVDLVKELAE 188 (241)
T ss_pred CHHHHHHHHHHcCCcEEEEEEccCCccccccccccccCCHHHHHHHHHhcCCCeEEEEecccccc-cCCCCHHHHHHHHH
Confidence 455666666766545555411 12233 888999998765221001 12257888999999
Q ss_pred HcCCCceEEEecCCCCHHHHHHHHHh-CcCEEEecHHHHHH
Q 017781 272 ATQGRIPVFLDGGVRRGTDVFKALAL-GASGIFIGRPVVYS 311 (366)
Q Consensus 272 ~~~~~i~vi~~GGI~~~~dv~kalal-GAd~V~igr~~l~~ 311 (366)
++ ++||+++|||++-.|+..+-.+ |...|.+||+++.+
T Consensus 189 ~~--~ipviaSGGv~s~~Di~~l~~~~G~~GvIvG~ALy~g 227 (241)
T COG0106 189 AV--DIPVIASGGVSSLDDIKALKELSGVEGVIVGRALYEG 227 (241)
T ss_pred Hh--CcCEEEecCcCCHHHHHHHHhcCCCcEEEEehHHhcC
Confidence 98 8999999999999999998889 99999999998754
|
|
| >cd00429 RPE Ribulose-5-phosphate 3-epimerase (RPE) | Back alignment and domain information |
|---|
Probab=97.36 E-value=0.01 Score=53.52 Aligned_cols=69 Identities=12% Similarity=0.208 Sum_probs=46.6
Q ss_pred cCCcEEEEcC-CCc-cCCCCCcchHHHHHHHHHHcC---CCceEEEecCCCCHHHHHHHHHhCcCEEEecHHHHH
Q 017781 241 AGAAGIIVSN-HGA-RQLDYVPATIMALEEVVKATQ---GRIPVFLDGGVRRGTDVFKALALGASGIFIGRPVVY 310 (366)
Q Consensus 241 aGad~I~vs~-~gg-~~~~~~~~~~~~l~~i~~~~~---~~i~vi~~GGI~~~~dv~kalalGAd~V~igr~~l~ 310 (366)
.++|.+.+.. +.| +.........+.+.++++..+ .++|+++.|||+. +++.+++..|||.|.+|++++.
T Consensus 126 ~~~d~i~~~~~~~g~tg~~~~~~~~~~i~~~~~~~~~~~~~~pi~v~GGI~~-env~~~~~~gad~iivgsai~~ 199 (211)
T cd00429 126 DEVDLVLVMSVNPGFGGQKFIPEVLEKIRKLRELIPENNLNLLIEVDGGINL-ETIPLLAEAGADVLVAGSALFG 199 (211)
T ss_pred hhCCEEEEEEECCCCCCcccCHHHHHHHHHHHHHHHhcCCCeEEEEECCCCH-HHHHHHHHcCCCEEEECHHHhC
Confidence 4478876543 222 211222334455556655442 1489999999995 9999999999999999999864
|
This enzyme catalyses the interconversion of D-ribulose 5-phosphate (Ru5P) into D-xylulose 5-phosphate, as part of the Calvin cycle (reductive pentose phosphate pathway) in chloroplasts and in the oxidative pentose phosphate pathway. In the Calvin cycle Ru5P is phosphorylated by phosphoribulose kinase to ribulose-1,5-bisphosphate, which in turn is used by RubisCO (ribulose-1,5-bisphosphate carboxylase/oxygenase) to incorporate CO2 as the central step in carbohydrate synthesis. |
| >PRK05283 deoxyribose-phosphate aldolase; Provisional | Back alignment and domain information |
|---|
Probab=97.35 E-value=0.0014 Score=61.58 Aligned_cols=92 Identities=26% Similarity=0.230 Sum_probs=63.2
Q ss_pred CHHHHHHHHHhcCCCEEEEec-----cCHH-H--------HHcCCcEEEEcCCCccCCCCCcchHHHHHHHHHHc-----
Q 017781 213 SWKDVKWLQTITKLPILVKGV-----LTAE-D--------VQAGAAGIIVSNHGARQLDYVPATIMALEEVVKAT----- 273 (366)
Q Consensus 213 ~~~~i~~lr~~~~~pv~vK~v-----~~~~-d--------~~aGad~I~vs~~gg~~~~~~~~~~~~l~~i~~~~----- 273 (366)
..++|+++++..+-++.+|.+ ++.+ . .++|||+|.-|...+ .+..+.+.+.-+++.+
T Consensus 117 v~~ei~~v~~~~~~~~~lKVIlEt~~L~~ee~i~~a~~~a~~aGADFVKTSTGf~----~~gAt~edv~lm~~~i~~~~~ 192 (257)
T PRK05283 117 GFELVKACKEACAANVLLKVIIETGELKDEALIRKASEIAIKAGADFIKTSTGKV----PVNATLEAARIMLEVIRDMGV 192 (257)
T ss_pred HHHHHHHHHHHhCCCceEEEEEeccccCCHHHHHHHHHHHHHhCCCEEEcCCCCC----CCCCCHHHHHHHHHHHHhccc
Confidence 345788888876435788866 3433 2 899999999876322 1224555444444443
Q ss_pred CCCceEEEecCCCCHHHHHHHHHhCcCEEEecHHHHH
Q 017781 274 QGRIPVFLDGGVRRGTDVFKALALGASGIFIGRPVVY 310 (366)
Q Consensus 274 ~~~i~vi~~GGI~~~~dv~kalalGAd~V~igr~~l~ 310 (366)
++++.|=++||||+.+++.+++.+|.+.. |.-|+.
T Consensus 193 ~~~vgIKAsGGIrt~~~A~~~i~ag~~~l--g~~~~~ 227 (257)
T PRK05283 193 AKTVGFKPAGGVRTAEDAAQYLALADEIL--GADWAD 227 (257)
T ss_pred CCCeeEEccCCCCCHHHHHHHHHHHHHHh--ChhhcC
Confidence 35789999999999999999999998754 555543
|
|
| >PRK04302 triosephosphate isomerase; Provisional | Back alignment and domain information |
|---|
Probab=97.34 E-value=0.011 Score=54.64 Aligned_cols=92 Identities=27% Similarity=0.371 Sum_probs=55.9
Q ss_pred HHHHHHhcCCCEEEEeccCHHH----HHcCCcEEEEcCCC--cc--CCCCC-cchHH-HHHHHHHHcCCCceEEEecCCC
Q 017781 217 VKWLQTITKLPILVKGVLTAED----VQAGAAGIIVSNHG--AR--QLDYV-PATIM-ALEEVVKATQGRIPVFLDGGVR 286 (366)
Q Consensus 217 i~~lr~~~~~pv~vK~v~~~~d----~~aGad~I~vs~~g--g~--~~~~~-~~~~~-~l~~i~~~~~~~i~vi~~GGI~ 286 (366)
++..++ .++.+++ .+.+.++ .+.|.|.|.+-..+ |+ ..... +...+ .+..+++. ..++||++.|||+
T Consensus 107 v~~a~~-~Gl~~I~-~v~~~~~~~~~~~~~~~~I~~~p~~~igt~~~~~~~~~~~i~~~~~~ir~~-~~~~pvi~GggI~ 183 (223)
T PRK04302 107 VERAKK-LGLESVV-CVNNPETSAAAAALGPDYVAVEPPELIGTGIPVSKAKPEVVEDAVEAVKKV-NPDVKVLCGAGIS 183 (223)
T ss_pred HHHHHH-CCCeEEE-EcCCHHHHHHHhcCCCCEEEEeCccccccCCCCCcCCHHHHHHHHHHHHhc-cCCCEEEEECCCC
Confidence 334444 2544333 3344444 56778888754321 21 11111 22222 23333332 2368999999999
Q ss_pred CHHHHHHHHHhCcCEEEecHHHHHH
Q 017781 287 RGTDVFKALALGASGIFIGRPVVYS 311 (366)
Q Consensus 287 ~~~dv~kalalGAd~V~igr~~l~~ 311 (366)
+++++..++..|||+|.+|+.++..
T Consensus 184 ~~e~~~~~~~~gadGvlVGsa~l~~ 208 (223)
T PRK04302 184 TGEDVKAALELGADGVLLASGVVKA 208 (223)
T ss_pred CHHHHHHHHcCCCCEEEEehHHhCC
Confidence 9999999999999999999999853
|
|
| >PRK08745 ribulose-phosphate 3-epimerase; Provisional | Back alignment and domain information |
|---|
Probab=97.31 E-value=0.023 Score=52.50 Aligned_cols=63 Identities=21% Similarity=0.374 Sum_probs=41.7
Q ss_pred hHHHHHHHHHHcC---CCceEEEecCCCCHHHHHHHHHhCcCEEEecHHHHHHhhhcCHHHHHHHHHHHHHHH
Q 017781 262 TIMALEEVVKATQ---GRIPVFLDGGVRRGTDVFKALALGASGIFIGRPVVYSLAAEGEKGVRRVLEMLREEF 331 (366)
Q Consensus 262 ~~~~l~~i~~~~~---~~i~vi~~GGI~~~~dv~kalalGAd~V~igr~~l~~l~~~G~~gv~~~~~~l~~el 331 (366)
.++-+.++++... .++.|-+||||. .+.+.+..++|||.+.+|+.+ |. .+.....++.+++.+
T Consensus 154 ~l~KI~~l~~~~~~~~~~~~IeVDGGI~-~eti~~l~~aGaDi~V~GSai-F~-----~~d~~~~~~~lr~~~ 219 (223)
T PRK08745 154 ALDKLRAIRKKIDALGKPIRLEIDGGVK-ADNIGAIAAAGADTFVAGSAI-FN-----APDYAQVIAQMRAAV 219 (223)
T ss_pred HHHHHHHHHHHHHhcCCCeeEEEECCCC-HHHHHHHHHcCCCEEEEChhh-hC-----CCCHHHHHHHHHHHH
Confidence 4455555555432 257799999996 667778888999999999984 43 111344555555443
|
|
| >PF00977 His_biosynth: Histidine biosynthesis protein; InterPro: IPR006062 Histidine is formed by several complex and distinct biochemical reactions catalysed by eight enzymes | Back alignment and domain information |
|---|
Probab=97.31 E-value=0.0009 Score=62.10 Aligned_cols=67 Identities=25% Similarity=0.394 Sum_probs=48.5
Q ss_pred HHcCCcEEEEcCC--CccCCCCCcchHHHHHHHHHHcCCCceEEEecCCCCHHHHHHHHHhCcCEEEecHHHHH
Q 017781 239 VQAGAAGIIVSNH--GARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFIGRPVVY 310 (366)
Q Consensus 239 ~~aGad~I~vs~~--gg~~~~~~~~~~~~l~~i~~~~~~~i~vi~~GGI~~~~dv~kalalGAd~V~igr~~l~ 310 (366)
.+.|+..|++..- -|+ ..| +.++.+.++++.+ ++|||++|||++.+|+.++...|+++|.+|++|..
T Consensus 157 ~~~g~~~ii~tdi~~dGt--~~G-~d~~~~~~l~~~~--~~~viasGGv~~~~Dl~~l~~~G~~gvivg~al~~ 225 (229)
T PF00977_consen 157 EELGAGEIILTDIDRDGT--MQG-PDLELLKQLAEAV--NIPVIASGGVRSLEDLRELKKAGIDGVIVGSALHE 225 (229)
T ss_dssp HHTT-SEEEEEETTTTTT--SSS---HHHHHHHHHHH--SSEEEEESS--SHHHHHHHHHTTECEEEESHHHHT
T ss_pred HhcCCcEEEEeeccccCC--cCC-CCHHHHHHHHHHc--CCCEEEecCCCCHHHHHHHHHCCCcEEEEehHhhC
Confidence 4456666665431 121 123 4678888898888 89999999999999999999999999999999864
|
Proteins involved in steps 4 and 6 of the histidine biosynthesis pathway are contained in one family. These enzymes are called His6 and His7 in eukaryotes and HisA and HisF in prokaryotes. HisA is a phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase (5.3.1.16 from EC), involved in the fourth step of histidine biosynthesis. The bacterial HisF protein is a cyclase which catalyzes the cyclization reaction that produces D-erythro-imidazole glycerol phosphate during the sixth step of histidine biosynthesis. The yeast His7 protein is a bifunctional protein which catalyzes an amido-transferase reaction that generates imidazole-glycerol phosphate and 5-aminoimidazol-4-carboxamide. The latter is the ribonucleotide used for purine biosynthesis. The enzyme also catalyzes the cyclization reaction that produces D-erythro-imidazole glycerol phosphate, and is involved in the fifth and sixth steps in histidine biosynthesis.; GO: 0000105 histidine biosynthetic process; PDB: 2VEP_A 2X30_A 1VZW_A 2WJZ_A 2LLE_A 2A0N_A 1THF_D 1GPW_E 1VH7_A 1KA9_F .... |
| >PLN02617 imidazole glycerol phosphate synthase hisHF | Back alignment and domain information |
|---|
Probab=97.29 E-value=0.0041 Score=64.67 Aligned_cols=68 Identities=18% Similarity=0.165 Sum_probs=52.7
Q ss_pred HHcCCcEEEEcCC--CccCCCCCcchHHHHHHHHHHcCCCceEEEecCCCCHHHHHHHHH-hCcCEEEecHHHHHH
Q 017781 239 VQAGAAGIIVSNH--GARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALA-LGASGIFIGRPVVYS 311 (366)
Q Consensus 239 ~~aGad~I~vs~~--gg~~~~~~~~~~~~l~~i~~~~~~~i~vi~~GGI~~~~dv~kala-lGAd~V~igr~~l~~ 311 (366)
.+.||..|.+..- -|+. .-..++.+..+.+.+ ++|||++||+.+.+|+.+++. .|||++..++.|-|.
T Consensus 448 ~~~Gageil~t~id~DGt~---~G~d~~l~~~v~~~~--~ipviasGG~g~~~d~~~~~~~~~~~a~~aa~~fh~~ 518 (538)
T PLN02617 448 EELGAGEILLNCIDCDGQG---KGFDIELVKLVSDAV--TIPVIASSGAGTPEHFSDVFSKTNASAALAAGIFHRK 518 (538)
T ss_pred HhcCCCEEEEeeccccccc---cCcCHHHHHHHHhhC--CCCEEEECCCCCHHHHHHHHhcCCccEEEEEeeeccC
Confidence 5678877776432 1211 124678888888887 899999999999999999998 679999999888764
|
|
| >COG0107 HisF Imidazoleglycerol-phosphate synthase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=97.27 E-value=0.0013 Score=60.25 Aligned_cols=69 Identities=25% Similarity=0.315 Sum_probs=55.8
Q ss_pred HHcCCcEEEEcCCCccCCCCCcchHHHHHHHHHHcCCCceEEEecCCCCHHHHHHHHHhCcCEEEecHHHHH
Q 017781 239 VQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFIGRPVVY 310 (366)
Q Consensus 239 ~~aGad~I~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~i~vi~~GGI~~~~dv~kalalGAd~V~igr~~l~ 310 (366)
.+.|||-++.-.-.. ..++..+.++.+.++++.+ .+|+.+-|||++-+|+-+.|.+|||-|.|.++-+.
T Consensus 40 ~e~GADElvFlDItA-s~~gr~~~~~vv~r~A~~v--fiPltVGGGI~s~eD~~~ll~aGADKVSINsaAv~ 108 (256)
T COG0107 40 NEEGADELVFLDITA-SSEGRETMLDVVERVAEQV--FIPLTVGGGIRSVEDARKLLRAGADKVSINSAAVK 108 (256)
T ss_pred HHcCCCeEEEEeccc-ccccchhHHHHHHHHHhhc--eeeeEecCCcCCHHHHHHHHHcCCCeeeeChhHhc
Confidence 889999998543211 1122345778899999888 89999999999999999999999999999998764
|
|
| >PRK06512 thiamine-phosphate pyrophosphorylase; Provisional | Back alignment and domain information |
|---|
Probab=97.26 E-value=0.0049 Score=56.92 Aligned_cols=91 Identities=13% Similarity=0.090 Sum_probs=62.5
Q ss_pred HHHHHHhcCCCEEEEe--ccCHHH----HHcCCcEEEEcCCCccC-CCCCcchHHHHHHHHHHcCCCceEEEecCCCCHH
Q 017781 217 VKWLQTITKLPILVKG--VLTAED----VQAGAAGIIVSNHGARQ-LDYVPATIMALEEVVKATQGRIPVFLDGGVRRGT 289 (366)
Q Consensus 217 i~~lr~~~~~pv~vK~--v~~~~d----~~aGad~I~vs~~gg~~-~~~~~~~~~~l~~i~~~~~~~i~vi~~GGI~~~~ 289 (366)
++.+|+..+--.++.. ..+.++ .+.|+|+|.++.-.-.. .+..+..++.+.++.+.+ ++||++-||| +.+
T Consensus 100 ~~~~r~~~~~~~iiG~s~~~s~~~a~~A~~~gaDYv~~Gpv~t~tK~~~~p~gl~~l~~~~~~~--~iPvvAIGGI-~~~ 176 (221)
T PRK06512 100 LAEAIEKHAPKMIVGFGNLRDRHGAMEIGELRPDYLFFGKLGADNKPEAHPRNLSLAEWWAEMI--EIPCIVQAGS-DLA 176 (221)
T ss_pred HHHHHHhcCCCCEEEecCCCCHHHHHHhhhcCCCEEEECCCCCCCCCCCCCCChHHHHHHHHhC--CCCEEEEeCC-CHH
Confidence 4555555432234432 224554 57899999987542111 112233466777777766 7999999999 899
Q ss_pred HHHHHHHhCcCEEEecHHHHH
Q 017781 290 DVFKALALGASGIFIGRPVVY 310 (366)
Q Consensus 290 dv~kalalGAd~V~igr~~l~ 310 (366)
++.+++..||++|.+-+.++.
T Consensus 177 n~~~~~~~GA~giAvisai~~ 197 (221)
T PRK06512 177 SAVEVAETGAEFVALERAVFD 197 (221)
T ss_pred HHHHHHHhCCCEEEEhHHhhC
Confidence 999999999999999999864
|
|
| >cd00956 Transaldolase_FSA Transaldolase-like fructose-6-phosphate aldolases (FSA) found in bacteria and archaea, which are member of the MipB/TalC subfamily of class I aldolases | Back alignment and domain information |
|---|
Probab=97.26 E-value=0.043 Score=50.29 Aligned_cols=96 Identities=21% Similarity=0.222 Sum_probs=72.8
Q ss_pred HHHHHHHHhcCCCEEEEeccCHHH----HHcCCcEEEEcCCCccCCCCCcchHHHHHHHHHHcCC---CceEEEecCCCC
Q 017781 215 KDVKWLQTITKLPILVKGVLTAED----VQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQG---RIPVFLDGGVRR 287 (366)
Q Consensus 215 ~~i~~lr~~~~~pv~vK~v~~~~d----~~aGad~I~vs~~gg~~~~~~~~~~~~l~~i~~~~~~---~i~vi~~GGI~~ 287 (366)
+.++.|++. ++++-+-.+.+.+. .++|+++| +-+-||--+.+...++.+.++.+.+.. +..|++ .|+|+
T Consensus 92 ~ai~~L~~~-gi~v~~T~V~s~~Qa~~Aa~AGA~yv--sP~vgR~~~~g~dg~~~i~~i~~~~~~~~~~tkil~-As~r~ 167 (211)
T cd00956 92 KAIKKLSEE-GIKTNVTAIFSAAQALLAAKAGATYV--SPFVGRIDDLGGDGMELIREIRTIFDNYGFDTKILA-ASIRN 167 (211)
T ss_pred HHHHHHHHc-CCceeeEEecCHHHHHHHHHcCCCEE--EEecChHhhcCCCHHHHHHHHHHHHHHcCCCceEEe-cccCC
Confidence 456666665 88999999999887 99999984 555566555666677777777665421 344555 56999
Q ss_pred HHHHHHHHHhCcCEEEecHHHHHHhhh
Q 017781 288 GTDVFKALALGASGIFIGRPVVYSLAA 314 (366)
Q Consensus 288 ~~dv~kalalGAd~V~igr~~l~~l~~ 314 (366)
..++..++.+|||.|-+.-.++..+..
T Consensus 168 ~~ei~~a~~~Gad~vTv~~~vl~~l~~ 194 (211)
T cd00956 168 PQHVIEAALAGADAITLPPDVLEQLLK 194 (211)
T ss_pred HHHHHHHHHcCCCEEEeCHHHHHHHhc
Confidence 999999999999999999988877653
|
FSA catalyze an aldol cleavage of fructose 6-phosphate and do not utilize fructose, fructose 1-phosphate, fructose 1,6-phosphate, or dihydroxyacetone phosphate. The enzymes belong to the transaldolase family that serves in transfer reactions in the pentose phosphate cycle, and are more distantly related to fructose 1,6-bisphosphate aldolase. |
| >PRK06801 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=97.23 E-value=0.075 Score=51.01 Aligned_cols=100 Identities=18% Similarity=0.217 Sum_probs=68.5
Q ss_pred HHcCCcEEEEcCCCccCCCCC--cchHHHHHHHHHHcCCCceEEEecC--CCCHHHHHHHHHhCcCEEEecHHHHHHhhh
Q 017781 239 VQAGAAGIIVSNHGARQLDYV--PATIMALEEVVKATQGRIPVFLDGG--VRRGTDVFKALALGASGIFIGRPVVYSLAA 314 (366)
Q Consensus 239 ~~aGad~I~vs~~gg~~~~~~--~~~~~~l~~i~~~~~~~i~vi~~GG--I~~~~dv~kalalGAd~V~igr~~l~~l~~ 314 (366)
.+.|+|.+-++...-+....+ ...++.|.++++.+ ++|+++-|| |. .+++.+++.+|++.|-+++.+..+...
T Consensus 166 ~~tgvD~LAvaiGt~Hg~y~~~~~l~~e~l~~i~~~~--~~PLVlHGGSgi~-~e~~~~~i~~Gi~KINv~T~~~~a~~~ 242 (286)
T PRK06801 166 DRTGIDALAVAIGNAHGKYKGEPKLDFARLAAIHQQT--GLPLVLHGGSGIS-DADFRRAIELGIHKINFYTGMSQAALA 242 (286)
T ss_pred HHHCcCEEEeccCCCCCCCCCCCCCCHHHHHHHHHhc--CCCEEEECCCCCC-HHHHHHHHHcCCcEEEehhHHHHHHHH
Confidence 478999999853211112222 24788999999887 799999998 75 678999999999999999987654210
Q ss_pred -------cCH-------HHHHHHHHHHHHHHHHHHHHcCCC
Q 017781 315 -------EGE-------KGVRRVLEMLREEFELAMALSGCR 341 (366)
Q Consensus 315 -------~G~-------~gv~~~~~~l~~el~~~m~~~G~~ 341 (366)
..+ .-.....+.+++..+..|+++|..
T Consensus 243 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~gs~ 283 (286)
T PRK06801 243 AVEQRMTHRHAIYDEFAELLLGIEEAISDTVAQQMRIFGSA 283 (286)
T ss_pred HHHHHHHhCCcccCCHHHHHHHHHHHHHHHHHHHHHHhCCC
Confidence 111 113334456677777788887754
|
|
| >PRK05742 nicotinate-nucleotide pyrophosphorylase; Provisional | Back alignment and domain information |
|---|
Probab=97.21 E-value=0.0033 Score=59.94 Aligned_cols=84 Identities=20% Similarity=0.219 Sum_probs=61.1
Q ss_pred HHHHHHHhcCCCEEEEeccCHHH----HHcCCcEEEEcCCCccCCCCCcchHHHHHHHHHHcCCCceEEEecCCCCHHHH
Q 017781 216 DVKWLQTITKLPILVKGVLTAED----VQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDV 291 (366)
Q Consensus 216 ~i~~lr~~~~~pv~vK~v~~~~d----~~aGad~I~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~i~vi~~GGI~~~~dv 291 (366)
.++.+|+..+...+.-.+-+.++ .++|+|+|.+.|- ..+.+.++.+..++++|+.++||| +.+.+
T Consensus 179 av~~~r~~~~~~~I~VEv~tleea~eA~~~gaD~I~LD~~----------~~e~l~~~v~~~~~~i~leAsGGI-t~~ni 247 (277)
T PRK05742 179 AVAAAHRIAPGKPVEVEVESLDELRQALAAGADIVMLDEL----------SLDDMREAVRLTAGRAKLEASGGI-NESTL 247 (277)
T ss_pred HHHHHHHhCCCCeEEEEeCCHHHHHHHHHcCCCEEEECCC----------CHHHHHHHHHHhCCCCcEEEECCC-CHHHH
Confidence 46777776432223233456666 8899999987652 345566666655558999999999 69999
Q ss_pred HHHHHhCcCEEEecHHHHH
Q 017781 292 FKALALGASGIFIGRPVVY 310 (366)
Q Consensus 292 ~kalalGAd~V~igr~~l~ 310 (366)
.++.+.|+|.+.+|.+...
T Consensus 248 ~~~a~tGvD~Isvg~lt~s 266 (277)
T PRK05742 248 RVIAETGVDYISIGAMTKD 266 (277)
T ss_pred HHHHHcCCCEEEEChhhcC
Confidence 9999999999999987643
|
|
| >PRK12595 bifunctional 3-deoxy-7-phosphoheptulonate synthase/chorismate mutase; Reviewed | Back alignment and domain information |
|---|
Probab=97.21 E-value=0.043 Score=54.39 Aligned_cols=203 Identities=21% Similarity=0.251 Sum_probs=110.8
Q ss_pred CCCCCccceeEcCcccC--Cc-eEecccccccccCChhhHHHHHHHHHcCCceecCC-CCCCCHHHHhccCCCceEEEee
Q 017781 55 DVSKIDMNTTVLGFKIS--MP-IMIAPTAMQKMAHPEGEYATARAASAAGTIMTLSS-WSTSSVEEVASTGPGIRFFQLY 130 (366)
Q Consensus 55 ~~~~vd~st~l~g~~l~--~P-i~iApm~~~~l~~~~~e~~la~aa~~~G~~~~vs~-~~~~~~e~i~~~~~~~~~~Qly 130 (366)
....-|+.+.+.+..+. .| ++++|.. +-..+.-..+|+.+++.|+.+.-.. +.+. . .|+.||
T Consensus 99 ~~~~~~~~~~~~~~~~g~~~~~~iaGpc~---iE~~~~~~~~A~~lk~~g~~~~r~~~~kpR-------t--sp~~f~-- 164 (360)
T PRK12595 99 KKKPEDTIVDVKGEVIGDGNQSFIFGPCS---VESYEQVEAVAKALKAKGLKLLRGGAFKPR-------T--SPYDFQ-- 164 (360)
T ss_pred ccCCCCCEEEECCEEecCCCeeeEEeccc---ccCHHHHHHHHHHHHHcCCcEEEccccCCC-------C--CCcccc--
Confidence 33344555555444332 34 4556632 2223344688888999888877632 1111 1 345555
Q ss_pred ecCCHHHHHHHHHHHHHcCCCEEEEecCCCCCcchhHHHhhhcCCCCccccccccccccCCCccccchhhHHHhhhccCC
Q 017781 131 VYKDRNVVAQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLTLKNFQGLDLGKMDEANDSGLAAYVAGQIDR 210 (366)
Q Consensus 131 ~~~d~~~~~~~l~ra~~~G~~ai~vtvd~p~~g~r~~d~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~ 210 (366)
+-..+....+.+.+++.|...+. ++-- .+.-+....+ ++. +. + +..
T Consensus 165 -g~~~e~l~~L~~~~~~~Gl~~~t-~v~d----~~~~~~l~~~-vd~-lk-----------I---------------~s~ 210 (360)
T PRK12595 165 -GLGVEGLKILKQVADEYGLAVIS-EIVN----PADVEVALDY-VDV-IQ-----------I---------------GAR 210 (360)
T ss_pred -CCCHHHHHHHHHHHHHcCCCEEE-eeCC----HHHHHHHHHh-CCe-EE-----------E---------------Ccc
Confidence 33446666777777888876653 2111 1111221111 110 00 0 001
Q ss_pred C-CCHHHHHHHHHhcCCCEEEEec--cCHHH--------HHcCCcEEEEcCCCccCCC---CCcchHHHHHHHHHHcCCC
Q 017781 211 S-LSWKDVKWLQTITKLPILVKGV--LTAED--------VQAGAAGIIVSNHGARQLD---YVPATIMALEEVVKATQGR 276 (366)
Q Consensus 211 ~-~~~~~i~~lr~~~~~pv~vK~v--~~~~d--------~~aGad~I~vs~~gg~~~~---~~~~~~~~l~~i~~~~~~~ 276 (366)
. ..+..++.+.+ +++||++|.. .+.+| .+.|.+-|++.-+|-+... .....+..++.+++.. .
T Consensus 211 ~~~n~~LL~~~a~-~gkPVilk~G~~~t~~e~~~Ave~i~~~Gn~~i~L~erg~s~yp~~~~~~ldl~~i~~lk~~~--~ 287 (360)
T PRK12595 211 NMQNFELLKAAGR-VNKPVLLKRGLSATIEEFIYAAEYIMSQGNGQIILCERGIRTYEKATRNTLDISAVPILKQET--H 287 (360)
T ss_pred cccCHHHHHHHHc-cCCcEEEeCCCCCCHHHHHHHHHHHHHCCCCCEEEECCccCCCCCCCCCCcCHHHHHHHHHHh--C
Confidence 1 23456666665 5899999966 37776 6678765655433432211 1123677888887765 6
Q ss_pred ceEEEecCCCCH----H--HHHHHHHhCcCEEEecHHH
Q 017781 277 IPVFLDGGVRRG----T--DVFKALALGASGIFIGRPV 308 (366)
Q Consensus 277 i~vi~~GGI~~~----~--dv~kalalGAd~V~igr~~ 308 (366)
+||++|.+=..| . -...|+++|||+++|-+-|
T Consensus 288 ~PV~~d~~Hs~G~r~~~~~~a~aAva~GAdg~~iE~H~ 325 (360)
T PRK12595 288 LPVMVDVTHSTGRRDLLLPTAKAALAIGADGVMAEVHP 325 (360)
T ss_pred CCEEEeCCCCCcchhhHHHHHHHHHHcCCCeEEEEecC
Confidence 899996432222 2 3445789999999999877
|
|
| >TIGR00693 thiE thiamine-phosphate pyrophosphorylase | Back alignment and domain information |
|---|
Probab=97.20 E-value=0.0057 Score=54.92 Aligned_cols=77 Identities=23% Similarity=0.275 Sum_probs=56.3
Q ss_pred eccCHHH----HHcCCcEEEEcCCCccC--CCC-CcchHHHHHHHHHHcCCCceEEEecCCCCHHHHHHHHHhCcCEEEe
Q 017781 232 GVLTAED----VQAGAAGIIVSNHGARQ--LDY-VPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFI 304 (366)
Q Consensus 232 ~v~~~~d----~~aGad~I~vs~~gg~~--~~~-~~~~~~~l~~i~~~~~~~i~vi~~GGI~~~~dv~kalalGAd~V~i 304 (366)
.+.+.++ .+.|+|+|.++.-.-+. ... .+..++.+.++.+..+ ++||++.||| +.+++.+++.+||++|.+
T Consensus 102 s~h~~~e~~~a~~~g~dyi~~~~v~~t~~k~~~~~~~g~~~l~~~~~~~~-~~pv~a~GGI-~~~~~~~~~~~G~~gva~ 179 (196)
T TIGR00693 102 STHNLEELAEAEAEGADYIGFGPIFPTPTKKDPAPPAGVELLREIAATSI-DIPIVAIGGI-TLENAAEVLAAGADGVAV 179 (196)
T ss_pred eCCCHHHHHHHhHcCCCEEEECCccCCCCCCCCCCCCCHHHHHHHHHhcC-CCCEEEECCc-CHHHHHHHHHcCCCEEEE
Confidence 3456665 67899999987643211 111 2225677777776543 5999999999 689999999999999999
Q ss_pred cHHHHH
Q 017781 305 GRPVVY 310 (366)
Q Consensus 305 gr~~l~ 310 (366)
|+.++.
T Consensus 180 ~~~i~~ 185 (196)
T TIGR00693 180 VSAIMQ 185 (196)
T ss_pred hHHhhC
Confidence 998863
|
This model includes ThiE from Bacillus subtilis but excludes its paralog, the regulatory protein TenI, and neighbors of TenI. |
| >cd04723 HisA_HisF Phosphoribosylformimino-5-aminoimidazole carboxamide ribonucleotide (ProFAR) isomerase (HisA) and the cyclase subunit of imidazoleglycerol phosphate synthase (HisF) | Back alignment and domain information |
|---|
Probab=97.20 E-value=0.00062 Score=63.35 Aligned_cols=49 Identities=31% Similarity=0.424 Sum_probs=44.2
Q ss_pred chHHHHHHHHHHcCCCceEEEecCCCCHHHHHHHHHhCcCEEEecHHHHHH
Q 017781 261 ATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFIGRPVVYS 311 (366)
Q Consensus 261 ~~~~~l~~i~~~~~~~i~vi~~GGI~~~~dv~kalalGAd~V~igr~~l~~ 311 (366)
+..+.+.++.+.+ .+||++.|||++.+|+.+++.+||++|.+|+++..+
T Consensus 176 ~~~~~~~~i~~~~--~ipvi~~GGi~s~edi~~l~~~G~~~vivGsal~~g 224 (233)
T cd04723 176 PDLELLERLAARA--DIPVIAAGGVRSVEDLELLKKLGASGALVASALHDG 224 (233)
T ss_pred cCHHHHHHHHHhc--CCCEEEeCCCCCHHHHHHHHHcCCCEEEEehHHHcC
Confidence 5678888888876 799999999999999999999999999999998754
|
The ProFAR isomerase catalyzes the fourth step in histidine biosynthesis, an isomerisation of the aminoaldose moiety of ProFAR to the aminoketose of PRFAR (N-(5'-phospho-D-1'-ribulosylformimino)-5-amino-1-(5''-phospho-ribosyl)-4-imidazolecarboxamide). In bacteria and archaea, ProFAR isomerase is encoded by the HisA gene. The Imidazole glycerol phosphate synthase (IGPS) catalyzes the fifth step of histidine biosynthesis, the formation of the imidazole ring. IGPS converts N1-(5'-phosphoribulosyl)-formimino-5-aminoimidazole-4-carboxamide ribonucleotide (PRFAR) to imidazole glycerol phosphate (ImGP) and 5'-(5-aminoimidazole-4-carboxamide) ribonucleotide (AICAR). This conversion involves two tightly coupled reactions in distinct active sites of IGPS. The two catalytic domains can be fused, like in fungi and pl |
| >PRK14114 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Provisional | Back alignment and domain information |
|---|
Probab=97.16 E-value=0.0011 Score=61.92 Aligned_cols=68 Identities=16% Similarity=0.303 Sum_probs=52.6
Q ss_pred HHcCCcEEEEcCC--CccCCCCCcchHHHHHHHHHHcCCCceEEEecCCCCHHHHHHHHHh-----C-cCEEEecHHHHH
Q 017781 239 VQAGAAGIIVSNH--GARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALAL-----G-ASGIFIGRPVVY 310 (366)
Q Consensus 239 ~~aGad~I~vs~~--gg~~~~~~~~~~~~l~~i~~~~~~~i~vi~~GGI~~~~dv~kalal-----G-Ad~V~igr~~l~ 310 (366)
.+.|+..|++..- -|+. .| +.++.+.++++.. ++|||++|||++.+|+.++..+ | +++|.+|+++..
T Consensus 154 ~~~g~~~ii~tdI~rdGt~--~G-~d~el~~~l~~~~--~~pviasGGv~s~~Dl~~l~~~~~~~~g~v~gvivg~Al~~ 228 (241)
T PRK14114 154 KEYGLEEIVHTEIEKDGTL--QE-HDFSLTRKIAIEA--EVKVFAAGGISSENSLKTAQRVHRETNGLLKGVIVGRAFLE 228 (241)
T ss_pred HhcCCCEEEEEeechhhcC--CC-cCHHHHHHHHHHC--CCCEEEECCCCCHHHHHHHHhcccccCCcEEEEEEehHHHC
Confidence 4567777776531 1211 22 5788888888876 8999999999999999999987 6 999999999865
Q ss_pred H
Q 017781 311 S 311 (366)
Q Consensus 311 ~ 311 (366)
+
T Consensus 229 g 229 (241)
T PRK14114 229 G 229 (241)
T ss_pred C
Confidence 3
|
|
| >PRK13585 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Provisional | Back alignment and domain information |
|---|
Probab=97.15 E-value=0.0015 Score=60.71 Aligned_cols=68 Identities=28% Similarity=0.491 Sum_probs=53.3
Q ss_pred HHcCCcEEEEcCCCccCCCCCcchHHHHHHHHHHcCCCceEEEecCCCCHHHHHHHHHhCcCEEEecHHHH
Q 017781 239 VQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFIGRPVV 309 (366)
Q Consensus 239 ~~aGad~I~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~i~vi~~GGI~~~~dv~kalalGAd~V~igr~~l 309 (366)
.+.|+|.+.+-...+ ........++.+.++.+.. .+|++++|||++.+|+.+++.+|||.|.+|+..+
T Consensus 42 ~~~G~~~l~i~dl~~-~~~~~~~~~~~i~~i~~~~--~~~l~v~GGi~~~~~~~~~~~~Ga~~v~iGs~~~ 109 (241)
T PRK13585 42 VDAGAETLHLVDLDG-AFEGERKNAEAIEKIIEAV--GVPVQLGGGIRSAEDAASLLDLGVDRVILGTAAV 109 (241)
T ss_pred HHcCCCEEEEEechh-hhcCCcccHHHHHHHHHHc--CCcEEEcCCcCCHHHHHHHHHcCCCEEEEChHHh
Confidence 567888887654321 1112345677888888876 7999999999999999999999999999999765
|
|
| >TIGR03572 WbuZ glycosyl amidation-associated protein WbuZ | Back alignment and domain information |
|---|
Probab=97.15 E-value=0.0019 Score=59.78 Aligned_cols=69 Identities=23% Similarity=0.291 Sum_probs=54.3
Q ss_pred HHcCCcEEEEcCCCccCCCCCcchHHHHHHHHHHcCCCceEEEecCCCCHHHHHHHHHhCcCEEEecHHHHH
Q 017781 239 VQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFIGRPVVY 310 (366)
Q Consensus 239 ~~aGad~I~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~i~vi~~GGI~~~~dv~kalalGAd~V~igr~~l~ 310 (366)
.+.|++.+.+..-.+ ........++.+.++++.+ .+||+++|||++.+|+.+++..||+.|.+|+..+.
T Consensus 40 ~~~g~~~i~i~dl~~-~~~~~~~n~~~~~~i~~~~--~~pv~~~ggi~~~~d~~~~~~~G~~~vilg~~~l~ 108 (232)
T TIGR03572 40 NAKGADELIVLDIDA-SKRGREPLFELISNLAEEC--FMPLTVGGGIRSLEDAKKLLSLGADKVSINTAALE 108 (232)
T ss_pred HHcCCCEEEEEeCCC-cccCCCCCHHHHHHHHHhC--CCCEEEECCCCCHHHHHHHHHcCCCEEEEChhHhc
Confidence 467888887654332 1112345778888898877 79999999999999999999999999999988754
|
This clade of sequences is highly similar to the HisF protein, but generally represents the second HisF homolog in the genome where the other is an authentic HisF observed in the context of a complete histidine biosynthesis operon. The similarity between these WbuZ sequences and true HisFs is such that often the closest match by BLAST of a WbuZ is a HisF. Only by making a multiple sequence alignment is the homology relationship among the WbuZ sequences made apparent. WbuZ genes are invariably observed in the presence of a homolog of the HisH protein (designated WbuY) and a proposed N-acetyl sugar amidotransferase designated in WbuX in E. coli, IfnA in P. aeriginosa and PseA in C. jejuni. Similarly, this trio of genes is invariably found in the context of saccharide biosynthesis loci. It has been shown that the WbuYZ homologs are not essential components of the activity expressed by WbuX, leading to the proposal that these to pr |
| >PRK04169 geranylgeranylglyceryl phosphate synthase-like protein; Reviewed | Back alignment and domain information |
|---|
Probab=97.13 E-value=0.002 Score=59.87 Aligned_cols=50 Identities=28% Similarity=0.415 Sum_probs=44.5
Q ss_pred CcchHHHHHHHHHHcCCCc-eEEEecCCCCHHHHHHHHHhCcCEEEecHHHHH
Q 017781 259 VPATIMALEEVVKATQGRI-PVFLDGGVRRGTDVFKALALGASGIFIGRPVVY 310 (366)
Q Consensus 259 ~~~~~~~l~~i~~~~~~~i-~vi~~GGI~~~~dv~kalalGAd~V~igr~~l~ 310 (366)
.+...+.+.++++.+ +. ||++.||||+.+++.+++..|||.|.+|+.+..
T Consensus 168 ~~~~~e~I~~v~~~~--~~~pvivGGGIrs~e~a~~~l~~GAD~VVVGSai~~ 218 (232)
T PRK04169 168 DPVPPEMVKAVKKAL--DITPLIYGGGIRSPEQARELMAAGADTIVVGNIIEE 218 (232)
T ss_pred CCCCHHHHHHHHHhc--CCCcEEEECCCCCHHHHHHHHHhCCCEEEEChHHhh
Confidence 455678888888877 66 999999999999999999999999999999874
|
|
| >PRK07998 gatY putative fructose-1,6-bisphosphate aldolase; Reviewed | Back alignment and domain information |
|---|
Probab=97.12 E-value=0.041 Score=52.66 Aligned_cols=98 Identities=13% Similarity=0.240 Sum_probs=70.1
Q ss_pred HHcCCcEEEEcC---CCccCCCCCc-chHHHHHHHHHHcCCCceEEEecCCCCH-HHHHHHHHhCcCEEEecHHHHHHhh
Q 017781 239 VQAGAAGIIVSN---HGARQLDYVP-ATIMALEEVVKATQGRIPVFLDGGVRRG-TDVFKALALGASGIFIGRPVVYSLA 313 (366)
Q Consensus 239 ~~aGad~I~vs~---~gg~~~~~~~-~~~~~l~~i~~~~~~~i~vi~~GGI~~~-~dv~kalalGAd~V~igr~~l~~l~ 313 (366)
.+.|+|.+-++. ||-+ .+| -.++.|.+|++.+ ++|+..-||=..+ +++.+++.+|+.-|-++|-+..+..
T Consensus 163 ~~TgvD~LAvaiGt~HG~Y---~~p~l~~~~l~~I~~~~--~vPLVlHGgSG~~~e~~~~ai~~Gi~KiNi~Tel~~a~~ 237 (283)
T PRK07998 163 ERTGCDMLAVSIGNVHGLE---DIPRIDIPLLKRIAEVS--PVPLVIHGGSGIPPEILRSFVNYKVAKVNIASDLRKAFI 237 (283)
T ss_pred HHhCcCeeehhccccccCC---CCCCcCHHHHHHHHhhC--CCCEEEeCCCCCCHHHHHHHHHcCCcEEEECHHHHHHHH
Confidence 678999999875 4432 232 2478999999988 8999999987777 6677899999999999997654321
Q ss_pred h-------cCH------HHHHHHHHHHHHHHHHHHHHcCCC
Q 017781 314 A-------EGE------KGVRRVLEMLREEFELAMALSGCR 341 (366)
Q Consensus 314 ~-------~G~------~gv~~~~~~l~~el~~~m~~~G~~ 341 (366)
. ..+ .-.....+.+++..+..|+.+|..
T Consensus 238 ~~~~~~l~~~~~~~d~~~~~~~~~~~~~~~v~~~i~~~gs~ 278 (283)
T PRK07998 238 TTVGKAYVNNHNEANLARVMAKAKQAVEEDVYSKIKMMNSN 278 (283)
T ss_pred HHHHHHHHhCcCcCCHHHHHHHHHHHHHHHHHHHHHHhCCC
Confidence 0 010 123344566778888888888864
|
|
| >PRK07428 nicotinate-nucleotide pyrophosphorylase; Provisional | Back alignment and domain information |
|---|
Probab=97.12 E-value=0.0056 Score=58.71 Aligned_cols=85 Identities=14% Similarity=0.154 Sum_probs=61.7
Q ss_pred HHHHHHHHhcCC-CEEEEeccCHHH----HHcCCcEEEEcCCCccCCCCCcchHHHHHHHHHHc---CCCceEEEecCCC
Q 017781 215 KDVKWLQTITKL-PILVKGVLTAED----VQAGAAGIIVSNHGARQLDYVPATIMALEEVVKAT---QGRIPVFLDGGVR 286 (366)
Q Consensus 215 ~~i~~lr~~~~~-pv~vK~v~~~~d----~~aGad~I~vs~~gg~~~~~~~~~~~~l~~i~~~~---~~~i~vi~~GGI~ 286 (366)
+.++.+|+..+. ..+--.+.+.++ .++|+|.|-++|- ++ +.+.++.+.+ ..++++.++|||
T Consensus 184 ~av~~~r~~~~~~~~I~VEv~tleea~eA~~~GaD~I~LDn~-------~~---e~l~~av~~~~~~~~~i~leAsGGI- 252 (288)
T PRK07428 184 EAITRIRQRIPYPLTIEVETETLEQVQEALEYGADIIMLDNM-------PV---DLMQQAVQLIRQQNPRVKIEASGNI- 252 (288)
T ss_pred HHHHHHHHhCCCCCEEEEECCCHHHHHHHHHcCCCEEEECCC-------CH---HHHHHHHHHHHhcCCCeEEEEECCC-
Confidence 458888887652 223234467776 8999999998863 23 3334433332 357999999999
Q ss_pred CHHHHHHHHHhCcCEEEecHHHHH
Q 017781 287 RGTDVFKALALGASGIFIGRPVVY 310 (366)
Q Consensus 287 ~~~dv~kalalGAd~V~igr~~l~ 310 (366)
+.+.+.++.+.|+|.+.+|+++..
T Consensus 253 t~~ni~~ya~tGvD~Isvgsl~~s 276 (288)
T PRK07428 253 TLETIRAVAETGVDYISSSAPITR 276 (288)
T ss_pred CHHHHHHHHHcCCCEEEEchhhhC
Confidence 699999999999999999997753
|
|
| >TIGR00078 nadC nicotinate-nucleotide pyrophosphorylase | Back alignment and domain information |
|---|
Probab=97.12 E-value=0.0057 Score=58.03 Aligned_cols=82 Identities=22% Similarity=0.230 Sum_probs=62.3
Q ss_pred HHHHHHHhcC-CCEEEEeccCHHH----HHcCCcEEEEcCCCccCCCCCcchHHHHHHHHHHcCCCceEEEecCCCCHHH
Q 017781 216 DVKWLQTITK-LPILVKGVLTAED----VQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTD 290 (366)
Q Consensus 216 ~i~~lr~~~~-~pv~vK~v~~~~d----~~aGad~I~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~i~vi~~GGI~~~~d 290 (366)
.++.+|+..+ ...+.-.+-+.++ .++|+|+|-+++- ..+.++++.+.++..+|+.++||| +.+.
T Consensus 167 av~~~r~~~~~~~~Igvev~t~eea~~A~~~gaDyI~ld~~----------~~e~lk~~v~~~~~~ipi~AsGGI-~~~n 235 (265)
T TIGR00078 167 AVKRARAAAPFALKIEVEVESLEEAEEAAEAGADIIMLDNM----------KPEEIKEAVQLLKGRVLLEASGGI-TLDN 235 (265)
T ss_pred HHHHHHHhCCCCCeEEEEeCCHHHHHHHHHcCCCEEEECCC----------CHHHHHHHHHHhcCCCcEEEECCC-CHHH
Confidence 4888888764 2334444567776 8999999988662 225666666666446999999999 6999
Q ss_pred HHHHHHhCcCEEEecHHH
Q 017781 291 VFKALALGASGIFIGRPV 308 (366)
Q Consensus 291 v~kalalGAd~V~igr~~ 308 (366)
+....+.|||.+.+|..+
T Consensus 236 i~~~a~~Gvd~Isvgait 253 (265)
T TIGR00078 236 LEEYAETGVDVISSGALT 253 (265)
T ss_pred HHHHHHcCCCEEEeCHHH
Confidence 999999999999997654
|
Synonym: quinolinate phosphoribosyltransferase (decarboxylating) |
| >PRK13587 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Provisional | Back alignment and domain information |
|---|
Probab=97.09 E-value=0.002 Score=59.95 Aligned_cols=66 Identities=12% Similarity=0.161 Sum_probs=52.6
Q ss_pred cCCcEEEEcCCCccCCCCCcchHHHHHHHHHHcCCCceEEEecCCCCHHHHHHHHHhCcCEEEecHHHH
Q 017781 241 AGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFIGRPVV 309 (366)
Q Consensus 241 aGad~I~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~i~vi~~GGI~~~~dv~kalalGAd~V~igr~~l 309 (366)
.|||.+.+-.-.+. ..+.+..++.+.++.+.+ .+||.+.|||||-+|+.+++.+||+.|.+|+..+
T Consensus 44 ~Ga~~l~ivDLd~a-~~~~~~n~~~I~~i~~~~--~~pi~vGGGIrs~e~v~~~l~~Ga~kvvigt~a~ 109 (234)
T PRK13587 44 ECVNRIHIVDLIGA-KAQHAREFDYIKSLRRLT--TKDIEVGGGIRTKSQIMDYFAAGINYCIVGTKGI 109 (234)
T ss_pred cCCCEEEEEECccc-ccCCcchHHHHHHHHhhc--CCeEEEcCCcCCHHHHHHHHHCCCCEEEECchHh
Confidence 58888886432111 123446788899998877 7999999999999999999999999999999764
|
|
| >PF04481 DUF561: Protein of unknown function (DUF561); InterPro: IPR007570 Protein in this entry are of unknown function and are found in cyanobacteria and the chloroplasts of algae | Back alignment and domain information |
|---|
Probab=97.09 E-value=0.01 Score=54.04 Aligned_cols=87 Identities=28% Similarity=0.360 Sum_probs=59.0
Q ss_pred HHHHHHhc-CCCEEEEec--cCHHH--------HHcCCcEEEEcCCCccCC-----------CCCcchHHHHHHHHHHcC
Q 017781 217 VKWLQTIT-KLPILVKGV--LTAED--------VQAGAAGIIVSNHGARQL-----------DYVPATIMALEEVVKATQ 274 (366)
Q Consensus 217 i~~lr~~~-~~pv~vK~v--~~~~d--------~~aGad~I~vs~~gg~~~-----------~~~~~~~~~l~~i~~~~~ 274 (366)
.++.|+.. ++|+.|-.- +..++ .++|+|.|.- .||+.. ...-|++.+..+|.+++
T Consensus 109 t~~tR~LLP~~~LsVTVPHiL~ld~Qv~LA~~L~~~GaDiIQT--EGgtss~p~~~g~lglIekaapTLAaay~ISr~v- 185 (242)
T PF04481_consen 109 TRETRSLLPDITLSVTVPHILPLDQQVQLAEDLVKAGADIIQT--EGGTSSKPTSPGILGLIEKAAPTLAAAYAISRAV- 185 (242)
T ss_pred HHHHHHhCCCCceEEecCccccHHHHHHHHHHHHHhCCcEEEc--CCCCCCCCCCcchHHHHHHHhHHHHHHHHHHhcc-
Confidence 44555544 466666532 33333 8999998853 444321 11235666677777777
Q ss_pred CCceEEEecCCCCHHHHHHHHHhCcCEEEecHHH
Q 017781 275 GRIPVFLDGGVRRGTDVFKALALGASGIFIGRPV 308 (366)
Q Consensus 275 ~~i~vi~~GGI~~~~dv~kalalGAd~V~igr~~ 308 (366)
++||+..+|+..-. +=-|+++||.+|++|+.+
T Consensus 186 -~iPVlcASGlS~vT-~PmAiaaGAsGVGVGSav 217 (242)
T PF04481_consen 186 -SIPVLCASGLSAVT-APMAIAAGASGVGVGSAV 217 (242)
T ss_pred -CCceEeccCcchhh-HHHHHHcCCcccchhHHh
Confidence 89999999997655 445899999999999876
|
As the family is exclusively found in phototrophic organisms it may play a role in photosynthesis. |
| >COG2022 ThiG Uncharacterized enzyme of thiazole biosynthesis [Nucleotide transport and metabolism] | Back alignment and domain information |
|---|
Probab=97.09 E-value=0.0015 Score=59.82 Aligned_cols=68 Identities=21% Similarity=0.393 Sum_probs=52.8
Q ss_pred HHcCCcEEEEcCCC-ccCCCCCcchHHHHHHHHHHcCCCceEEEecCCCCHHHHHHHHHhCcCEEEecHHHHH
Q 017781 239 VQAGAAGIIVSNHG-ARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFIGRPVVY 310 (366)
Q Consensus 239 ~~aGad~I~vs~~g-g~~~~~~~~~~~~l~~i~~~~~~~i~vi~~GGI~~~~dv~kalalGAd~V~igr~~l~ 310 (366)
.++||..|-=-+.. |+ .-|+-+...|..+.+.. ++|||+|-||.++.|++.++++|+|+|++-+++-.
T Consensus 148 ee~GcaavMPl~aPIGS--g~G~~n~~~l~iiie~a--~VPviVDAGiG~pSdAa~aMElG~DaVL~NTAiA~ 216 (262)
T COG2022 148 EEAGCAAVMPLGAPIGS--GLGLQNPYNLEIIIEEA--DVPVIVDAGIGTPSDAAQAMELGADAVLLNTAIAR 216 (262)
T ss_pred HhcCceEeccccccccC--CcCcCCHHHHHHHHHhC--CCCEEEeCCCCChhHHHHHHhcccceeehhhHhhc
Confidence 89999887521110 11 12455667787777777 89999999999999999999999999999998743
|
|
| >PRK01362 putative translaldolase; Provisional | Back alignment and domain information |
|---|
Probab=97.08 E-value=0.13 Score=47.25 Aligned_cols=95 Identities=22% Similarity=0.164 Sum_probs=71.7
Q ss_pred HHHHHHHHhcCCCEEEEeccCHHH----HHcCCcEEEEcCCCccCCCCCcchHHHHHHHHHHcC---CCceEEEecCCCC
Q 017781 215 KDVKWLQTITKLPILVKGVLTAED----VQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQ---GRIPVFLDGGVRR 287 (366)
Q Consensus 215 ~~i~~lr~~~~~pv~vK~v~~~~d----~~aGad~I~vs~~gg~~~~~~~~~~~~l~~i~~~~~---~~i~vi~~GGI~~ 287 (366)
+.++.|++. ++++-+=.+.+... .++|+++|.. .-||-.+.+...+..+.++.+.+. .+..|++ ..+|+
T Consensus 92 ~a~~~L~~~-Gi~v~~T~vfs~~Qa~~Aa~aGa~yisp--yvgRi~d~g~dg~~~i~~~~~~~~~~~~~tkila-AS~r~ 167 (214)
T PRK01362 92 KAVKALSKE-GIKTNVTLIFSANQALLAAKAGATYVSP--FVGRLDDIGTDGMELIEDIREIYDNYGFDTEIIA-ASVRH 167 (214)
T ss_pred HHHHHHHHC-CCceEEeeecCHHHHHHHHhcCCcEEEe--ecchHhhcCCCHHHHHHHHHHHHHHcCCCcEEEE-eecCC
Confidence 445666554 89999999999887 8999997753 445555566667777777766552 2455555 45999
Q ss_pred HHHHHHHHHhCcCEEEecHHHHHHhh
Q 017781 288 GTDVFKALALGASGIFIGRPVVYSLA 313 (366)
Q Consensus 288 ~~dv~kalalGAd~V~igr~~l~~l~ 313 (366)
..++.+++.+|||.+-+.-.++..+.
T Consensus 168 ~~~v~~~~~~G~d~iTi~~~vl~~l~ 193 (214)
T PRK01362 168 PMHVLEAALAGADIATIPYKVIKQLF 193 (214)
T ss_pred HHHHHHHHHcCCCEEecCHHHHHHHH
Confidence 99999999999999999988887765
|
|
| >cd01568 QPRTase_NadC Quinolinate phosphoribosyl transferase (QAPRTase or QPRTase), also called nicotinate-nucleotide pyrophosphorylase, is involved in the de novo synthesis of NAD in both prokaryotes and eukaryotes | Back alignment and domain information |
|---|
Probab=97.08 E-value=0.0063 Score=57.91 Aligned_cols=83 Identities=25% Similarity=0.262 Sum_probs=60.9
Q ss_pred HHHHHHHHhcC-CCEEEEeccCHHH----HHcCCcEEEEcCCCccCCCCCcchHHHHHHHHHHcCC--CceEEEecCCCC
Q 017781 215 KDVKWLQTITK-LPILVKGVLTAED----VQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQG--RIPVFLDGGVRR 287 (366)
Q Consensus 215 ~~i~~lr~~~~-~pv~vK~v~~~~d----~~aGad~I~vs~~gg~~~~~~~~~~~~l~~i~~~~~~--~i~vi~~GGI~~ 287 (366)
..++.+|+..+ ...+.-.+.+.++ .++|+|+|-+.+-. .+.+.++.+.++. ++||.++||| +
T Consensus 169 ~~v~~~r~~~~~~~~I~vev~t~eea~~A~~~gaD~I~ld~~~----------~e~l~~~v~~i~~~~~i~i~asGGI-t 237 (269)
T cd01568 169 EAVKRARAAAPFEKKIEVEVETLEEAEEALEAGADIIMLDNMS----------PEELKEAVKLLKGLPRVLLEASGGI-T 237 (269)
T ss_pred HHHHHHHHhCCCCCeEEEecCCHHHHHHHHHcCCCEEEECCCC----------HHHHHHHHHHhccCCCeEEEEECCC-C
Confidence 35888888874 2334445567776 78999999886632 2444555444433 7899999999 5
Q ss_pred HHHHHHHHHhCcCEEEecHHH
Q 017781 288 GTDVFKALALGASGIFIGRPV 308 (366)
Q Consensus 288 ~~dv~kalalGAd~V~igr~~ 308 (366)
.+.+.+..+.|||++.+|..+
T Consensus 238 ~~ni~~~a~~Gad~Isvgal~ 258 (269)
T cd01568 238 LENIRAYAETGVDVISTGALT 258 (269)
T ss_pred HHHHHHHHHcCCCEEEEcHHH
Confidence 899999999999999998654
|
It catalyses the reaction of quinolinic acid (QA) with 5-phosphoribosyl-1-pyrophosphate (PRPP) in the presence of Mg2+ to produce nicotinic acid mononucleotide (NAMN), pyrophosphate and carbon dioxide. QPRTase functions as a homodimer with two active sites, each formed by the C-terminal region of one subunit and the N-terminal region of the other. |
| >TIGR00007 phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase | Back alignment and domain information |
|---|
Probab=97.07 E-value=0.0024 Score=58.93 Aligned_cols=69 Identities=30% Similarity=0.463 Sum_probs=53.9
Q ss_pred HHcCCcEEEEcCCCccCCCCCcchHHHHHHHHHHcCCCceEEEecCCCCHHHHHHHHHhCcCEEEecHHHHH
Q 017781 239 VQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFIGRPVVY 310 (366)
Q Consensus 239 ~~aGad~I~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~i~vi~~GGI~~~~dv~kalalGAd~V~igr~~l~ 310 (366)
.+.|++.+.+-.-.+. ..+....++.+.++++.+ .+|+.+.|||++.+|+.+++.+|||.|.+|+..+.
T Consensus 38 ~~~g~~~l~v~dl~~~-~~g~~~~~~~i~~i~~~~--~~pi~~ggGI~~~ed~~~~~~~Ga~~vvlgs~~l~ 106 (230)
T TIGR00007 38 EEEGAERIHVVDLDGA-KEGGPVNLPVIKKIVRET--GVPVQVGGGIRSLEDVEKLLDLGVDRVIIGTAAVE 106 (230)
T ss_pred HHcCCCEEEEEeCCcc-ccCCCCcHHHHHHHHHhc--CCCEEEeCCcCCHHHHHHHHHcCCCEEEEChHHhh
Confidence 5678888886543221 123345678888888877 79999999999999999999999999999987653
|
Examples of this enzyme in Actinobacteria have been found to be bifunctional, also possessing phosphoribosylanthranilate isomerase activity ; the trusted cutoff here has now been raised to 275.0 to exclude the bifunctional group, now represented by model TIGR01919. HisA from Lactococcus lactis was reported to be inactive (MEDLINE:93322317). |
| >TIGR01949 AroFGH_arch predicted phospho-2-dehydro-3-deoxyheptonate aldolase | Back alignment and domain information |
|---|
Probab=97.07 E-value=0.007 Score=57.12 Aligned_cols=83 Identities=23% Similarity=0.351 Sum_probs=57.9
Q ss_pred HHHHHHhcCCCEEEEec--------cCHHH--------HHcCCcEEEEcCCCccCCCCCcchHHHHHHHHHHcCCCceEE
Q 017781 217 VKWLQTITKLPILVKGV--------LTAED--------VQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVF 280 (366)
Q Consensus 217 i~~lr~~~~~pv~vK~v--------~~~~d--------~~aGad~I~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~i~vi 280 (366)
+..+...+++|+++... .+.+. .++|||+|.++.. ...+.+.++.+.. .+||.
T Consensus 128 i~~~~~~~g~~liv~~~~~Gvh~~~~~~~~~~~~~~~a~~~GADyikt~~~---------~~~~~l~~~~~~~--~iPVv 196 (258)
T TIGR01949 128 IAEICDDWGVPLLAMMYPRGPHIDDRDPELVAHAARLGAELGADIVKTPYT---------GDIDSFRDVVKGC--PAPVV 196 (258)
T ss_pred HHHHHHHcCCCEEEEEeccCcccccccHHHHHHHHHHHHHHCCCEEeccCC---------CCHHHHHHHHHhC--CCcEE
Confidence 34444456889888422 12121 6899999987521 2466777777665 79999
Q ss_pred EecCCC--CHHHHH----HHHHhCcCEEEecHHHHH
Q 017781 281 LDGGVR--RGTDVF----KALALGASGIFIGRPVVY 310 (366)
Q Consensus 281 ~~GGI~--~~~dv~----kalalGAd~V~igr~~l~ 310 (366)
+.|||+ +.+++. .++.+||+++.+|+.++.
T Consensus 197 a~GGi~~~~~~~~~~~i~~~~~aGa~Gia~g~~i~~ 232 (258)
T TIGR01949 197 VAGGPKTNSDREFLQMIKDAMEAGAAGVAVGRNIFQ 232 (258)
T ss_pred EecCCCCCCHHHHHHHHHHHHHcCCcEEehhhHhhc
Confidence 999999 655554 455899999999998864
|
Together these two genes appear to perform the synthesis of 3-dehydroquinate. It is presumed that the substrates and the chemical transformations involved are identical, but this has not yet been proven experimentally. |
| >PRK02615 thiamine-phosphate pyrophosphorylase; Provisional | Back alignment and domain information |
|---|
Probab=97.06 E-value=0.01 Score=58.43 Aligned_cols=90 Identities=21% Similarity=0.244 Sum_probs=63.4
Q ss_pred HHHHHhcC-CCEEEEeccCHHH----HHcCCcEEEEcCCCccC--CCCCcchHHHHHHHHHHcCCCceEEEecCCCCHHH
Q 017781 218 KWLQTITK-LPILVKGVLTAED----VQAGAAGIIVSNHGARQ--LDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTD 290 (366)
Q Consensus 218 ~~lr~~~~-~pv~vK~v~~~~d----~~aGad~I~vs~~gg~~--~~~~~~~~~~l~~i~~~~~~~i~vi~~GGI~~~~d 290 (366)
...|+..+ ..++--.+.+.++ .+.|+|+|.++-...+. .+..+..++.+..+.+.. ++||++-|||. .++
T Consensus 231 ~~aR~llg~~~iIG~S~Hs~~e~~~A~~~GaDYI~lGPvf~T~tKp~~~~~Gle~l~~~~~~~--~iPv~AiGGI~-~~n 307 (347)
T PRK02615 231 AVARQLLGPEKIIGRSTTNPEEMAKAIAEGADYIGVGPVFPTPTKPGKAPAGLEYLKYAAKEA--PIPWFAIGGID-KSN 307 (347)
T ss_pred HHHHHhcCCCCEEEEecCCHHHHHHHHHcCCCEEEECCCcCCCCCCCCCCCCHHHHHHHHHhC--CCCEEEECCCC-HHH
Confidence 44455442 2344334456766 67899999987644321 112244567777777666 79999999994 899
Q ss_pred HHHHHHhCcCEEEecHHHHH
Q 017781 291 VFKALALGASGIFIGRPVVY 310 (366)
Q Consensus 291 v~kalalGAd~V~igr~~l~ 310 (366)
+.+.+.+||++|.+++.++.
T Consensus 308 i~~l~~~Ga~gVAvisaI~~ 327 (347)
T PRK02615 308 IPEVLQAGAKRVAVVRAIMG 327 (347)
T ss_pred HHHHHHcCCcEEEEeHHHhC
Confidence 99999999999999999864
|
|
| >PRK04128 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Provisional | Back alignment and domain information |
|---|
Probab=97.05 E-value=0.0019 Score=59.95 Aligned_cols=49 Identities=20% Similarity=0.463 Sum_probs=43.7
Q ss_pred CcchHHHHHHHHHHcCCCceEEEecCCCCHHHHHHHHHhCcCEEEecHHHH
Q 017781 259 VPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFIGRPVV 309 (366)
Q Consensus 259 ~~~~~~~l~~i~~~~~~~i~vi~~GGI~~~~dv~kalalGAd~V~igr~~l 309 (366)
.++.++.+.++.+.+ .+||+++|||++-+|+.+++.+||+.|.+|+..+
T Consensus 58 ~~~n~~~i~~i~~~~--~~pv~~gGGIrs~edv~~l~~~G~~~vivGtaa~ 106 (228)
T PRK04128 58 KPKNLDVVKNIIRET--GLKVQVGGGLRTYESIKDAYEIGVENVIIGTKAF 106 (228)
T ss_pred CcchHHHHHHHHhhC--CCCEEEcCCCCCHHHHHHHHHCCCCEEEECchhc
Confidence 346788899998876 7999999999999999999999999999998764
|
|
| >TIGR02129 hisA_euk phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase, eukaryotic type | Back alignment and domain information |
|---|
Probab=97.02 E-value=0.0017 Score=61.00 Aligned_cols=62 Identities=23% Similarity=0.188 Sum_probs=52.6
Q ss_pred HHcCCcEEEEcCCCccCCCCCcchHHHHHHHHHHcCCCceEEEecCCCCHHHHHHHHHhCcCEEEecHHHHH
Q 017781 239 VQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFIGRPVVY 310 (366)
Q Consensus 239 ~~aGad~I~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~i~vi~~GGI~~~~dv~kalalGAd~V~igr~~l~ 310 (366)
.+.|++.+.|-.= +.+..+.+.++.+.+ .+||.+.||||+ +++.+++.+||+.|.+|+..+.
T Consensus 48 ~~~Ga~~lHvVDL-------g~~n~~~i~~i~~~~--~~~v~vGGGIr~-e~v~~~l~aGa~rVvIGS~av~ 109 (253)
T TIGR02129 48 KDDGVKGCHVIML-------GPNNDDAAKEALHAY--PGGLQVGGGIND-TNAQEWLDEGASHVIVTSWLFT 109 (253)
T ss_pred HHcCCCEEEEEEC-------CCCcHHHHHHHHHhC--CCCEEEeCCcCH-HHHHHHHHcCCCEEEECcHHHh
Confidence 7789999886432 334788999999887 799999999998 9999999999999999997653
|
This enzyme acts in the biosynthesis of histidine and has been characterized in S. cerevisiae and Arabidopsis where it complements the E. coli HisA gene. In eukaryotes the gene is known as HIS6. In bacteria, this gene is found in Fibrobacter succinogenes, presumably due to lateral gene transfer from plants in the rumen gut. |
| >cd01572 QPRTase Quinolinate phosphoribosyl transferase (QAPRTase or QPRTase), also called nicotinate-nucleotide pyrophosphorylase, is involved in the de novo synthesis of NAD in both prokaryotes and eukaryotes | Back alignment and domain information |
|---|
Probab=97.01 E-value=0.0058 Score=58.10 Aligned_cols=83 Identities=23% Similarity=0.238 Sum_probs=63.7
Q ss_pred HHHHHHHhcC-CCEEEEeccCHHH----HHcCCcEEEEcCCCccCCCCCcchHHHHHHHHHHcCCCceEEEecCCCCHHH
Q 017781 216 DVKWLQTITK-LPILVKGVLTAED----VQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTD 290 (366)
Q Consensus 216 ~i~~lr~~~~-~pv~vK~v~~~~d----~~aGad~I~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~i~vi~~GGI~~~~d 290 (366)
.++.+|+..+ ...+.-.+-+.++ .++|+|+|-+++- ..+.+.++.+.++.++|+.++||| +.+.
T Consensus 171 ~v~~~r~~~~~~~~Igvev~s~eea~~A~~~gaDyI~ld~~----------~~e~l~~~~~~~~~~ipi~AiGGI-~~~n 239 (268)
T cd01572 171 AVRRARAAAPFTLKIEVEVETLEQLKEALEAGADIIMLDNM----------SPEELREAVALLKGRVLLEASGGI-TLEN 239 (268)
T ss_pred HHHHHHHhCCCCCeEEEEECCHHHHHHHHHcCCCEEEECCc----------CHHHHHHHHHHcCCCCcEEEECCC-CHHH
Confidence 4788888764 2233334567766 8899999988763 246677777666446999999999 6999
Q ss_pred HHHHHHhCcCEEEecHHHH
Q 017781 291 VFKALALGASGIFIGRPVV 309 (366)
Q Consensus 291 v~kalalGAd~V~igr~~l 309 (366)
+.+..+.|+|.+.+|+++.
T Consensus 240 i~~~a~~Gvd~Iav~sl~~ 258 (268)
T cd01572 240 IRAYAETGVDYISVGALTH 258 (268)
T ss_pred HHHHHHcCCCEEEEEeeec
Confidence 9999999999999998764
|
It catalyses the reaction of quinolinic acid (QA) with 5-phosphoribosyl-1-pyrophosphate (PRPP) in the presence of Mg2+ to produce nicotinic acid mononucleotide (NAMN), pyrophosphate and carbon dioxide. QPRTase functions as a homodimer with two active sites, each formed by the C-terminal region of one subunit and the N-terminal region of the other. |
| >PRK07315 fructose-bisphosphate aldolase; Provisional | Back alignment and domain information |
|---|
Probab=97.00 E-value=0.2 Score=48.26 Aligned_cols=70 Identities=21% Similarity=0.403 Sum_probs=54.4
Q ss_pred HHcCCcEEEEc--C-CCccCCCCCcchHHHHHHHHHHcCCCceEEEecC--CCCHHHHHHHHHhCcCEEEecHHHHH
Q 017781 239 VQAGAAGIIVS--N-HGARQLDYVPATIMALEEVVKATQGRIPVFLDGG--VRRGTDVFKALALGASGIFIGRPVVY 310 (366)
Q Consensus 239 ~~aGad~I~vs--~-~gg~~~~~~~~~~~~l~~i~~~~~~~i~vi~~GG--I~~~~dv~kalalGAd~V~igr~~l~ 310 (366)
.+.|+|.+-++ + ||-+.-....-.++.|.++++.+. ++|+++=|| | +.+++.+++..|++.|-+++.+..
T Consensus 163 ~~tgvD~LAv~iG~vHG~y~t~~k~l~~e~L~~i~~~~~-~iPlVlhGGSGi-~~e~~~~~i~~Gi~KiNv~T~i~~ 237 (293)
T PRK07315 163 VETGIDFLAAGIGNIHGPYPENWEGLDLDHLEKLTEAVP-GFPIVLHGGSGI-PDDQIQEAIKLGVAKVNVNTECQI 237 (293)
T ss_pred HHcCCCEEeeccccccccCCCCCCcCCHHHHHHHHHhcc-CCCEEEECCCCC-CHHHHHHHHHcCCCEEEEccHHHH
Confidence 77899999998 4 553221112356789999998872 499999998 7 568899999999999999998764
|
|
| >PRK05581 ribulose-phosphate 3-epimerase; Validated | Back alignment and domain information |
|---|
Probab=96.99 E-value=0.016 Score=52.92 Aligned_cols=69 Identities=17% Similarity=0.278 Sum_probs=44.6
Q ss_pred cCCcEEEEcCC--CccCCCCCcchHHHHHHHHHHcCC---CceEEEecCCCCHHHHHHHHHhCcCEEEecHHHHH
Q 017781 241 AGAAGIIVSNH--GARQLDYVPATIMALEEVVKATQG---RIPVFLDGGVRRGTDVFKALALGASGIFIGRPVVY 310 (366)
Q Consensus 241 aGad~I~vs~~--gg~~~~~~~~~~~~l~~i~~~~~~---~i~vi~~GGI~~~~dv~kalalGAd~V~igr~~l~ 310 (366)
.++|+|.+... |++.....+...+.+.++++..+. ..+|.++|||+. +++.+++..|||.|.+|++++.
T Consensus 130 ~~~d~i~~~~~~~g~tg~~~~~~~~~~i~~~~~~~~~~~~~~~i~v~GGI~~-~nv~~l~~~GaD~vvvgSai~~ 203 (220)
T PRK05581 130 DLLDLVLLMSVNPGFGGQKFIPEVLEKIRELRKLIDERGLDILIEVDGGINA-DNIKECAEAGADVFVAGSAVFG 203 (220)
T ss_pred hhCCEEEEEEECCCCCcccccHHHHHHHHHHHHHHHhcCCCceEEEECCCCH-HHHHHHHHcCCCEEEEChhhhC
Confidence 46787766432 221111222334555555554421 145779999988 7999999999999999999864
|
|
| >PRK09722 allulose-6-phosphate 3-epimerase; Provisional | Back alignment and domain information |
|---|
Probab=96.98 E-value=0.078 Score=49.22 Aligned_cols=66 Identities=14% Similarity=0.285 Sum_probs=43.0
Q ss_pred hHHHHHHHHHHcC---CCceEEEecCCCCHHHHHHHHHhCcCEEEecHHHHHHhhhcCHHHHHHHHHHHHHHHH
Q 017781 262 TIMALEEVVKATQ---GRIPVFLDGGVRRGTDVFKALALGASGIFIGRPVVYSLAAEGEKGVRRVLEMLREEFE 332 (366)
Q Consensus 262 ~~~~l~~i~~~~~---~~i~vi~~GGI~~~~dv~kalalGAd~V~igr~~l~~l~~~G~~gv~~~~~~l~~el~ 332 (366)
.++-+.++++... .++.|.+||||. .+-+.+..++|||.+.+|+..+|.. .+...+.++.++..++
T Consensus 152 ~l~KI~~lr~~~~~~~~~~~IeVDGGI~-~~~i~~~~~aGad~~V~Gss~iF~~----~~d~~~~i~~l~~~~~ 220 (229)
T PRK09722 152 MLDKIAELKALRERNGLEYLIEVDGSCN-QKTYEKLMEAGADVFIVGTSGLFNL----DEDIDEAWDIMTAQIE 220 (229)
T ss_pred HHHHHHHHHHHHHhcCCCeEEEEECCCC-HHHHHHHHHcCCCEEEEChHHHcCC----CCCHHHHHHHHHHHHH
Confidence 4455555555432 257799999997 5677788899999999998766631 1113345555555443
|
|
| >cd01573 modD_like ModD; Quinolinate phosphoribosyl transferase (QAPRTase or QPRTase) present in some modABC operons in bacteria, which are involved in molybdate transport | Back alignment and domain information |
|---|
Probab=96.98 E-value=0.0084 Score=57.12 Aligned_cols=84 Identities=21% Similarity=0.253 Sum_probs=58.1
Q ss_pred HHHHHHHHHhcCCCEEEEeccCHHH----HHcCCcEEEEcCCCccCCCCCcchHHHHHHHHHHcC---CCceEEEecCCC
Q 017781 214 WKDVKWLQTITKLPILVKGVLTAED----VQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQ---GRIPVFLDGGVR 286 (366)
Q Consensus 214 ~~~i~~lr~~~~~pv~vK~v~~~~d----~~aGad~I~vs~~gg~~~~~~~~~~~~l~~i~~~~~---~~i~vi~~GGI~ 286 (366)
.+.++.+|+..+-..+.-.+.+.++ .++|+|+|-+++-. +.. +.++.+.++ .++|++++|||
T Consensus 171 ~~av~~~R~~~~~~~IgVev~t~eea~~A~~~gaD~I~ld~~~-------p~~---l~~~~~~~~~~~~~i~i~AsGGI- 239 (272)
T cd01573 171 LKALARLRATAPEKKIVVEVDSLEEALAAAEAGADILQLDKFS-------PEE---LAELVPKLRSLAPPVLLAAAGGI- 239 (272)
T ss_pred HHHHHHHHHhCCCCeEEEEcCCHHHHHHHHHcCCCEEEECCCC-------HHH---HHHHHHHHhccCCCceEEEECCC-
Confidence 3567888876532223333467766 88999999887632 222 233333222 36999999999
Q ss_pred CHHHHHHHHHhCcCEEEecHHH
Q 017781 287 RGTDVFKALALGASGIFIGRPV 308 (366)
Q Consensus 287 ~~~dv~kalalGAd~V~igr~~ 308 (366)
+.+.+.+..+.|+|++.+|..+
T Consensus 240 ~~~ni~~~~~~Gvd~I~vsai~ 261 (272)
T cd01573 240 NIENAAAYAAAGADILVTSAPY 261 (272)
T ss_pred CHHHHHHHHHcCCcEEEEChhh
Confidence 8999999999999999877654
|
In general, QPRTases are part of the de novo synthesis pathway of NAD in both prokaryotes and eukaryotes. They catalyse the reaction of quinolinic acid (QA) with 5-phosphoribosyl-1-pyrophosphate (PRPP) in the presence of Mg2+ to produce nicotinic acid mononucleotide (NAMN), pyrophosphate and carbon dioxide. |
| >PRK12656 fructose-6-phosphate aldolase; Reviewed | Back alignment and domain information |
|---|
Probab=96.97 E-value=0.2 Score=46.22 Aligned_cols=96 Identities=19% Similarity=0.179 Sum_probs=70.3
Q ss_pred HHHHHHHHHhcCCCEEEEeccCHHH----HHcCCcEEEEcCCCccCCCCCcchHHHHHHHHHHc---CCCceEEEecCCC
Q 017781 214 WKDVKWLQTITKLPILVKGVLTAED----VQAGAAGIIVSNHGARQLDYVPATIMALEEVVKAT---QGRIPVFLDGGVR 286 (366)
Q Consensus 214 ~~~i~~lr~~~~~pv~vK~v~~~~d----~~aGad~I~vs~~gg~~~~~~~~~~~~l~~i~~~~---~~~i~vi~~GGI~ 286 (366)
.+.++.|++. ++++-+-.+.+.+. .++||++|. -.-||--+.|......+.++.+.+ ..+..|++.+ +|
T Consensus 95 l~Ai~~L~~~-Gi~vn~T~ifs~~Qa~~Aa~aGa~yvs--PyvgRi~d~g~D~~~~i~~i~~~~~~~~~~tkILaAS-~r 170 (222)
T PRK12656 95 LAAIKTLKAE-GYHITATAIYTVFQGLLAIEAGADYLA--PYYNRMENLNIDSNAVIGQLAEAIDRENSDSKILAAS-FK 170 (222)
T ss_pred HHHHHHHHHC-CCceEEeeeCCHHHHHHHHHCCCCEEe--cccchhhhcCCCHHHHHHHHHHHHHhcCCCCEEEEEe-cC
Confidence 3456666554 89999999999987 899998874 344554444444455555555443 3356677766 99
Q ss_pred CHHHHHHHHHhCcCEEEecHHHHHHhh
Q 017781 287 RGTDVFKALALGASGIFIGRPVVYSLA 313 (366)
Q Consensus 287 ~~~dv~kalalGAd~V~igr~~l~~l~ 313 (366)
+..++.+++.+|||.+-+.-.++..+.
T Consensus 171 ~~~~v~~a~~~G~d~vTvp~~vl~~l~ 197 (222)
T PRK12656 171 NVAQVNKAFALGAQAVTAGPDVFEAAF 197 (222)
T ss_pred CHHHHHHHHHcCCCEEecCHHHHHHHh
Confidence 999999999999999999988887764
|
|
| >PRK12655 fructose-6-phosphate aldolase; Reviewed | Back alignment and domain information |
|---|
Probab=96.96 E-value=0.18 Score=46.52 Aligned_cols=109 Identities=17% Similarity=0.128 Sum_probs=74.1
Q ss_pred HHHHHHHHhcCCCEEEEeccCHHH----HHcCCcEEEEcCCCccCCCCCcchHHHHHHHHHHc---CCCceEEEecCCCC
Q 017781 215 KDVKWLQTITKLPILVKGVLTAED----VQAGAAGIIVSNHGARQLDYVPATIMALEEVVKAT---QGRIPVFLDGGVRR 287 (366)
Q Consensus 215 ~~i~~lr~~~~~pv~vK~v~~~~d----~~aGad~I~vs~~gg~~~~~~~~~~~~l~~i~~~~---~~~i~vi~~GGI~~ 287 (366)
+.++.|++. ++++-+=.+.+... ..+|+++|.. .-||--+.|...+..+.++.+.+ +.+..|++.+ +|+
T Consensus 94 ~Ai~~L~~~-GI~vn~T~vfs~~Qa~~Aa~aGa~yIsp--yvgR~~~~g~dg~~~i~~~~~~~~~~~~~tkILaAS-~r~ 169 (220)
T PRK12655 94 AAIKKLKKE-GIPTLGTAVYSAAQGLLAALAGAKYVAP--YVNRVDAQGGDGIRMVQELQTLLEMHAPESMVLAAS-FKT 169 (220)
T ss_pred HHHHHHHHC-CCceeEeEecCHHHHHHHHHcCCeEEEe--ecchHhHcCCCHHHHHHHHHHHHHhcCCCcEEEEEe-cCC
Confidence 445556553 89999999999887 7899987753 33443334444555555555543 2355666655 999
Q ss_pred HHHHHHHHHhCcCEEEecHHHHHHhhhcC--HHHHHHHHHHH
Q 017781 288 GTDVFKALALGASGIFIGRPVVYSLAAEG--EKGVRRVLEML 327 (366)
Q Consensus 288 ~~dv~kalalGAd~V~igr~~l~~l~~~G--~~gv~~~~~~l 327 (366)
..++.+++.+|||.+-+.-.++..+...- .++++.+.+.|
T Consensus 170 ~~~v~~~~~~G~d~vTip~~vl~~l~~~p~t~~~~~~F~~dw 211 (220)
T PRK12655 170 PRQALDCLLAGCQSITLPLDVAQQMLNTPAVESAIEKFEQDW 211 (220)
T ss_pred HHHHHHHHHcCCCEEECCHHHHHHHHcCCChHHHHHHHHHHH
Confidence 99999999999999999998888765321 24555444443
|
|
| >cd04727 pdxS PdxS is a subunit of the pyridoxal 5'-phosphate (PLP) synthase, an important enzyme in deoxyxylulose 5-phosphate (DXP)-independent pathway for de novo biosynthesis of PLP, present in some eubacteria, in archaea, fungi, plants, plasmodia, and some metazoa | Back alignment and domain information |
|---|
Probab=96.95 E-value=0.057 Score=51.27 Aligned_cols=81 Identities=16% Similarity=0.107 Sum_probs=58.7
Q ss_pred CHHHHHHHHHhcCCCEEEEeccC-HHH----HHcCCcEEEEcCCCccCCCCCcchHHHHHHHHHHcCCCceEEEecCCCC
Q 017781 213 SWKDVKWLQTITKLPILVKGVLT-AED----VQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRR 287 (366)
Q Consensus 213 ~~~~i~~lr~~~~~pv~vK~v~~-~~d----~~aGad~I~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~i~vi~~GGI~~ 287 (366)
+.++|+++++.+++||+-|.-.. ..+ .++|+|.|..+..- .|.-+.+..+++.. ++|+++ |++|
T Consensus 53 ~~~~I~~Ik~~V~iPVIGi~K~~~~~Ea~~L~eaGvDiIDaT~r~-------rP~~~~~~~iK~~~--~~l~MA--D~st 121 (283)
T cd04727 53 DPKMIKEIMDAVSIPVMAKVRIGHFVEAQILEALGVDMIDESEVL-------TPADEEHHIDKHKF--KVPFVC--GARN 121 (283)
T ss_pred CHHHHHHHHHhCCCCeEEeeehhHHHHHHHHHHcCCCEEeccCCC-------CcHHHHHHHHHHHc--CCcEEc--cCCC
Confidence 56899999999999999875433 333 99999999533211 12344556665544 555554 6999
Q ss_pred HHHHHHHHHhCcCEEEe
Q 017781 288 GTDVFKALALGASGIFI 304 (366)
Q Consensus 288 ~~dv~kalalGAd~V~i 304 (366)
-+++..+..+|||.|.-
T Consensus 122 leEal~a~~~Gad~I~T 138 (283)
T cd04727 122 LGEALRRISEGAAMIRT 138 (283)
T ss_pred HHHHHHHHHCCCCEEEe
Confidence 99999999999998853
|
Together with PdxT, PdxS forms the PLP synthase, a heteromeric glutamine amidotransferase (GATase), whereby PdxT produces ammonia from glutamine and PdxS combines ammonia with five- and three-carbon phosphosugars to form PLP. PLP is the biologically active form of vitamin B6, an essential cofactor in many biochemical processes. PdxS subunits form two hexameric rings. |
| >PRK01033 imidazole glycerol phosphate synthase subunit HisF; Provisional | Back alignment and domain information |
|---|
Probab=96.94 E-value=0.006 Score=57.61 Aligned_cols=69 Identities=16% Similarity=0.218 Sum_probs=54.3
Q ss_pred HHcCCcEEEEcCCCccCCCCCcchHHHHHHHHHHcCCCceEEEecCCCCHHHHHHHHHhCcCEEEecHHHHH
Q 017781 239 VQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFIGRPVVY 310 (366)
Q Consensus 239 ~~aGad~I~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~i~vi~~GGI~~~~dv~kalalGAd~V~igr~~l~ 310 (366)
.+.|++.+.+..-.+. .....+.++.+.++.+.. .+||+++|||++.+|+.+++.+||+.|.+|+..+.
T Consensus 40 ~~~g~~~l~i~Dl~~~-~~~~~~n~~~i~~i~~~~--~~pv~~gGGi~s~~d~~~l~~~G~~~vvigs~~~~ 108 (258)
T PRK01033 40 NEKEVDELIVLDIDAS-KRGSEPNYELIENLASEC--FMPLCYGGGIKTLEQAKKIFSLGVEKVSINTAALE 108 (258)
T ss_pred HHcCCCEEEEEECCCC-cCCCcccHHHHHHHHHhC--CCCEEECCCCCCHHHHHHHHHCCCCEEEEChHHhc
Confidence 5678888887653221 012345788899998876 79999999999999999999999999999987643
|
|
| >TIGR01919 hisA-trpF 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase/N-(5'phosphoribosyl)anthranilate isomerase | Back alignment and domain information |
|---|
Probab=96.92 E-value=0.0036 Score=58.69 Aligned_cols=68 Identities=19% Similarity=0.120 Sum_probs=50.2
Q ss_pred HHcCCcEEEEcCC--CccCCCCCcchHHHHHHHHHHcCCCceEEEecCCCCHHHHHHHH---HhCcCEEEecHHHHHH
Q 017781 239 VQAGAAGIIVSNH--GARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKAL---ALGASGIFIGRPVVYS 311 (366)
Q Consensus 239 ~~aGad~I~vs~~--gg~~~~~~~~~~~~l~~i~~~~~~~i~vi~~GGI~~~~dv~kal---alGAd~V~igr~~l~~ 311 (366)
.+.|+..|++..- -|+. .| +.++.+.++++.. ++|||++|||++.+|+.+.- ..|+++|.+|++|..+
T Consensus 159 ~~~g~~~ii~tdI~~dGt~--~G-~d~~l~~~l~~~~--~~pviasGGv~s~eDl~~l~~l~~~Gv~gvivg~Al~~g 231 (243)
T TIGR01919 159 DSGGCSRVVVTDSKKDGLS--GG-PNELLLEVVAART--DAIVAASGGSSLLDDLRAIKYLDEGGVSVAIGGKLLYAR 231 (243)
T ss_pred HhCCCCEEEEEecCCcccC--CC-cCHHHHHHHHhhC--CCCEEEECCcCCHHHHHHHHhhccCCeeEEEEhHHHHcC
Confidence 3456666766542 2221 23 5777888888776 79999999999999999763 3599999999998653
|
This model represents a bifunctional protein posessing both hisA (1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase) and trpF (N-(5'phosphoribosyl)anthranilate isomerase) activities. Thus, it is involved in both the histidine and tryptophan biosynthetic pathways. Enzymes with this property have been described only in the Actinobacteria (High-GC gram-positive). The enzyme is closely related to the monofunctional HisA proteins (TIGR00007) and in Actinobacteria, the classical monofunctional TrpF is generally absent. |
| >PRK13307 bifunctional formaldehyde-activating enzyme/3-hexulose-6-phosphate synthase; Provisional | Back alignment and domain information |
|---|
Probab=96.92 E-value=0.039 Score=55.19 Aligned_cols=67 Identities=25% Similarity=0.342 Sum_probs=49.2
Q ss_pred HHcCCcEEEEcCCCccCCCCCcchHHHHHHHHHHcCCCceEEEecCCCCHHHHHHHHHhCcCEEEecHHHH
Q 017781 239 VQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFIGRPVV 309 (366)
Q Consensus 239 ~~aGad~I~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~i~vi~~GGI~~~~dv~kalalGAd~V~igr~~l 309 (366)
...++|.|.++. +.......+.++.+.++++. ..+++|.++|||. .+++-+++.+|||.+.+||.+.
T Consensus 296 l~~~vD~Vllht--~vdp~~~~~~~~kI~~ikk~-~~~~~I~VdGGI~-~eti~~l~~aGADivVVGsaIf 362 (391)
T PRK13307 296 LKVKPDVVELHR--GIDEEGTEHAWGNIKEIKKA-GGKILVAVAGGVR-VENVEEALKAGADILVVGRAIT 362 (391)
T ss_pred hhCCCCEEEEcc--ccCCCcccchHHHHHHHHHh-CCCCcEEEECCcC-HHHHHHHHHcCCCEEEEeHHHh
Confidence 466889887753 11111224566777777765 3478999999998 8888899999999999999854
|
|
| >KOG1606 consensus Stationary phase-induced protein, SOR/SNZ family [Coenzyme transport and metabolism] | Back alignment and domain information |
|---|
Probab=96.90 E-value=0.018 Score=52.08 Aligned_cols=36 Identities=39% Similarity=0.787 Sum_probs=31.5
Q ss_pred CCceE--EEecCCCCHHHHHHHHHhCcCEEEecHHHHH
Q 017781 275 GRIPV--FLDGGVRRGTDVFKALALGASGIFIGRPVVY 310 (366)
Q Consensus 275 ~~i~v--i~~GGI~~~~dv~kalalGAd~V~igr~~l~ 310 (366)
+++|| ++.|||.|+.|++-.+.||+|+|.+|+-++.
T Consensus 206 GrlPVV~FAaGGvaTPADAALmMQLGCdGVFVGSgiFk 243 (296)
T KOG1606|consen 206 GRLPVVNFAAGGVATPADAALMMQLGCDGVFVGSGIFK 243 (296)
T ss_pred CCCceEEecccCcCChhHHHHHHHcCCCeEEecccccc
Confidence 36775 7999999999999999999999999986543
|
|
| >COG0269 SgbH 3-hexulose-6-phosphate synthase and related proteins [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=96.87 E-value=0.039 Score=50.37 Aligned_cols=100 Identities=19% Similarity=0.239 Sum_probs=66.9
Q ss_pred cCCCEEEEec--cCHHH----HH-cCCcEEEEcCCCcc--CCCCCcchHHHHHHHHHHcCCCceEEEecCCCCHHHHHHH
Q 017781 224 TKLPILVKGV--LTAED----VQ-AGAAGIIVSNHGAR--QLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKA 294 (366)
Q Consensus 224 ~~~pv~vK~v--~~~~d----~~-aGad~I~vs~~gg~--~~~~~~~~~~~l~~i~~~~~~~i~vi~~GGI~~~~dv~ka 294 (366)
+++-+.+=.+ .++++ .+ +|+|.+.++ -|+ |..+--+.++.|.++.+.......|-+.||| +++++-..
T Consensus 105 ~~~~v~iDl~~~~~~~~~~~~l~~~gvd~~~~H--~g~D~q~~G~~~~~~~l~~ik~~~~~g~~vAVaGGI-~~~~i~~~ 181 (217)
T COG0269 105 YGKEVQIDLIGVWDPEQRAKWLKELGVDQVILH--RGRDAQAAGKSWGEDDLEKIKKLSDLGAKVAVAGGI-TPEDIPLF 181 (217)
T ss_pred cCCeEEEEeecCCCHHHHHHHHHHhCCCEEEEE--ecccHhhcCCCccHHHHHHHHHhhccCceEEEecCC-CHHHHHHH
Confidence 4555555544 34555 44 999999884 343 2222233467777777765334789999999 68999999
Q ss_pred HHhCcCEEEecHHHHHHhhhcCHHHHHHHHHHHHHHHH
Q 017781 295 LALGASGIFIGRPVVYSLAAEGEKGVRRVLEMLREEFE 332 (366)
Q Consensus 295 lalGAd~V~igr~~l~~l~~~G~~gv~~~~~~l~~el~ 332 (366)
...|++.|.+||.+.. ...+.+..+.+++++.
T Consensus 182 ~~~~~~ivIvGraIt~------a~dp~~~a~~~~~~i~ 213 (217)
T COG0269 182 KGIGADIVIVGRAITG------AKDPAEAARKFKEEID 213 (217)
T ss_pred hcCCCCEEEECchhcC------CCCHHHHHHHHHHHHh
Confidence 9999999999998753 3333445555665553
|
|
| >PRK11840 bifunctional sulfur carrier protein/thiazole synthase protein; Provisional | Back alignment and domain information |
|---|
Probab=96.87 E-value=0.0012 Score=63.66 Aligned_cols=76 Identities=21% Similarity=0.344 Sum_probs=54.2
Q ss_pred EEeccCHHH----HHcCCcEEEEcC--CCccCCCCCcchHHHHHHHHHHcCCCceEEEecCCCCHHHHHHHHHhCcCEEE
Q 017781 230 VKGVLTAED----VQAGAAGIIVSN--HGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIF 303 (366)
Q Consensus 230 vK~v~~~~d----~~aGad~I~vs~--~gg~~~~~~~~~~~~l~~i~~~~~~~i~vi~~GGI~~~~dv~kalalGAd~V~ 303 (366)
+=...++.. .++|+-+|---+ -|. ..|....+.+..+.+.. ++||+.++||.+++|+.+|+++|||+|.
T Consensus 202 ~yc~~d~~~a~~l~~~g~~avmPl~~pIGs---g~gv~~p~~i~~~~e~~--~vpVivdAGIg~~sda~~AmelGadgVL 276 (326)
T PRK11840 202 VYCSDDPIAAKRLEDAGAVAVMPLGAPIGS---GLGIQNPYTIRLIVEGA--TVPVLVDAGVGTASDAAVAMELGCDGVL 276 (326)
T ss_pred EEeCCCHHHHHHHHhcCCEEEeeccccccC---CCCCCCHHHHHHHHHcC--CCcEEEeCCCCCHHHHHHHHHcCCCEEE
Confidence 333445544 888984443211 111 12344667777777764 7999999999999999999999999999
Q ss_pred ecHHHHH
Q 017781 304 IGRPVVY 310 (366)
Q Consensus 304 igr~~l~ 310 (366)
+.+.+..
T Consensus 277 ~nSaIa~ 283 (326)
T PRK11840 277 MNTAIAE 283 (326)
T ss_pred Ecceecc
Confidence 9998753
|
|
| >PF00977 His_biosynth: Histidine biosynthesis protein; InterPro: IPR006062 Histidine is formed by several complex and distinct biochemical reactions catalysed by eight enzymes | Back alignment and domain information |
|---|
Probab=96.83 E-value=0.004 Score=57.75 Aligned_cols=69 Identities=25% Similarity=0.379 Sum_probs=50.7
Q ss_pred HHcCCcEEEEcCCCccCCCCCcchHHHHHHHHHHcCCCceEEEecCCCCHHHHHHHHHhCcCEEEecHHHHH
Q 017781 239 VQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFIGRPVVY 310 (366)
Q Consensus 239 ~~aGad~I~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~i~vi~~GGI~~~~dv~kalalGAd~V~igr~~l~ 310 (366)
.+.|+|.+.+-.=.+ ...+.+...+.+.++.+.+ .+||.++||||+.+|+.+.+.+||+.|.+|+..+.
T Consensus 39 ~~~g~~~l~ivDLda-a~~g~~~n~~~i~~i~~~~--~~~i~vgGGIrs~ed~~~ll~~Ga~~Vvigt~~~~ 107 (229)
T PF00977_consen 39 NEQGADELHIVDLDA-AKEGRGSNLELIKEIAKET--GIPIQVGGGIRSIEDAERLLDAGADRVVIGTEALE 107 (229)
T ss_dssp HHTT-SEEEEEEHHH-HCCTHHHHHHHHHHHHHHS--SSEEEEESSE-SHHHHHHHHHTT-SEEEESHHHHH
T ss_pred HHcCCCEEEEEEccC-cccCchhHHHHHHHHHhcC--CccEEEeCccCcHHHHHHHHHhCCCEEEeChHHhh
Confidence 355777777543111 1123346778899999887 69999999999999999999999999999998764
|
Proteins involved in steps 4 and 6 of the histidine biosynthesis pathway are contained in one family. These enzymes are called His6 and His7 in eukaryotes and HisA and HisF in prokaryotes. HisA is a phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase (5.3.1.16 from EC), involved in the fourth step of histidine biosynthesis. The bacterial HisF protein is a cyclase which catalyzes the cyclization reaction that produces D-erythro-imidazole glycerol phosphate during the sixth step of histidine biosynthesis. The yeast His7 protein is a bifunctional protein which catalyzes an amido-transferase reaction that generates imidazole-glycerol phosphate and 5-aminoimidazol-4-carboxamide. The latter is the ribonucleotide used for purine biosynthesis. The enzyme also catalyzes the cyclization reaction that produces D-erythro-imidazole glycerol phosphate, and is involved in the fifth and sixth steps in histidine biosynthesis.; GO: 0000105 histidine biosynthetic process; PDB: 2VEP_A 2X30_A 1VZW_A 2WJZ_A 2LLE_A 2A0N_A 1THF_D 1GPW_E 1VH7_A 1KA9_F .... |
| >PRK12653 fructose-6-phosphate aldolase; Reviewed | Back alignment and domain information |
|---|
Probab=96.80 E-value=0.34 Score=44.69 Aligned_cols=95 Identities=17% Similarity=0.157 Sum_probs=68.6
Q ss_pred HHHHHHHHhcCCCEEEEeccCHHH----HHcCCcEEEEcCCCccCCCCCcchHHHHHHHHHHc---CCCceEEEecCCCC
Q 017781 215 KDVKWLQTITKLPILVKGVLTAED----VQAGAAGIIVSNHGARQLDYVPATIMALEEVVKAT---QGRIPVFLDGGVRR 287 (366)
Q Consensus 215 ~~i~~lr~~~~~pv~vK~v~~~~d----~~aGad~I~vs~~gg~~~~~~~~~~~~l~~i~~~~---~~~i~vi~~GGI~~ 287 (366)
+.++.|++. ++++-+=.+.+.+. ..+||++|.. .-||--+.+...+..+.++.+.+ +.+..|++.+ +|+
T Consensus 94 ~A~~~L~~~-GI~vn~T~vfs~~Qa~~Aa~aGa~yIsp--yvgR~~~~g~dg~~~i~~i~~~~~~~~~~tkILaAS-~r~ 169 (220)
T PRK12653 94 AAIKMLKAE-GIPTLGTAVYGAAQGLLSALAGAEYVAP--YVNRIDAQGGSGIQTVTDLQQLLKMHAPQAKVLAAS-FKT 169 (220)
T ss_pred HHHHHHHHc-CCCeeEEEecCHHHHHHHHhcCCcEEEe--ecChHhhcCCChHHHHHHHHHHHHhcCCCcEEEEEe-cCC
Confidence 445566554 89999999999887 8899998754 33443344444555555555543 2355666655 999
Q ss_pred HHHHHHHHHhCcCEEEecHHHHHHhh
Q 017781 288 GTDVFKALALGASGIFIGRPVVYSLA 313 (366)
Q Consensus 288 ~~dv~kalalGAd~V~igr~~l~~l~ 313 (366)
..++.+++.+|||.+-+.-.++..+.
T Consensus 170 ~~~v~~~~~~G~d~vTip~~vl~~l~ 195 (220)
T PRK12653 170 PRQALDCLLAGCESITLPLDVAQQMI 195 (220)
T ss_pred HHHHHHHHHcCCCEEECCHHHHHHHH
Confidence 99999999999999999999888764
|
|
| >PRK08005 epimerase; Validated | Back alignment and domain information |
|---|
Probab=96.80 E-value=0.097 Score=47.96 Aligned_cols=47 Identities=21% Similarity=0.251 Sum_probs=34.7
Q ss_pred chHHHHHHHHHHcCCCceEEEecCCCCHHHHHHHHHhCcCEEEecHHHH
Q 017781 261 ATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFIGRPVV 309 (366)
Q Consensus 261 ~~~~~l~~i~~~~~~~i~vi~~GGI~~~~dv~kalalGAd~V~igr~~l 309 (366)
..++-+.++++... ...|.+||||. .+-+.+..++|||.+.+|+.+.
T Consensus 149 ~~~~KI~~l~~~~~-~~~I~VDGGI~-~~~i~~l~~aGad~~V~GsaiF 195 (210)
T PRK08005 149 AMCEKVSQSREHFP-AAECWADGGIT-LRAARLLAAAGAQHLVIGRALF 195 (210)
T ss_pred HHHHHHHHHHHhcc-cCCEEEECCCC-HHHHHHHHHCCCCEEEEChHhh
Confidence 34455555555442 34799999996 6677788899999999998753
|
|
| >PRK08227 autoinducer 2 aldolase; Validated | Back alignment and domain information |
|---|
Probab=96.80 E-value=0.021 Score=54.02 Aligned_cols=79 Identities=20% Similarity=0.342 Sum_probs=54.8
Q ss_pred HHHHHHHhcCCCEEEEecc------CHHH---------HHcCCcEEEEcCCCccCCCCCcchHHHHHHHHHHcCCCceEE
Q 017781 216 DVKWLQTITKLPILVKGVL------TAED---------VQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVF 280 (366)
Q Consensus 216 ~i~~lr~~~~~pv~vK~v~------~~~d---------~~aGad~I~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~i~vi 280 (366)
.+.+-.+.|++|+++ ... +..+ .+.|||.|.+.= +. +.+.++.+.. .+||+
T Consensus 131 ~v~~ea~~~G~Plla-~~prG~~~~~~~~~ia~aaRiaaELGADiVK~~y----------~~-~~f~~vv~a~--~vPVv 196 (264)
T PRK08227 131 QLVDAGLRYGMPVMA-VTAVGKDMVRDARYFSLATRIAAEMGAQIIKTYY----------VE-EGFERITAGC--PVPIV 196 (264)
T ss_pred HHHHHHHHhCCcEEE-EecCCCCcCchHHHHHHHHHHHHHHcCCEEecCC----------CH-HHHHHHHHcC--CCcEE
Confidence 344445568999887 221 1112 999999997621 12 5677777766 79999
Q ss_pred EecCCCCH-HHH----HHHHHhCcCEEEecHHH
Q 017781 281 LDGGVRRG-TDV----FKALALGASGIFIGRPV 308 (366)
Q Consensus 281 ~~GGI~~~-~dv----~kalalGAd~V~igr~~ 308 (366)
..||=+.. +|+ ..++..||.+|.+||=+
T Consensus 197 iaGG~k~~~~~~L~~v~~ai~aGa~Gv~~GRNI 229 (264)
T PRK08227 197 IAGGKKLPERDALEMCYQAIDEGASGVDMGRNI 229 (264)
T ss_pred EeCCCCCCHHHHHHHHHHHHHcCCceeeechhh
Confidence 99999853 334 35777899999999965
|
|
| >PRK08072 nicotinate-nucleotide pyrophosphorylase; Provisional | Back alignment and domain information |
|---|
Probab=96.79 E-value=0.016 Score=55.33 Aligned_cols=84 Identities=24% Similarity=0.161 Sum_probs=62.9
Q ss_pred HHHHHHHHhcCCCEEE-EeccCHHH----HHcCCcEEEEcCCCccCCCCCcchHHHHHHHHHHcCCCceEEEecCCCCHH
Q 017781 215 KDVKWLQTITKLPILV-KGVLTAED----VQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGT 289 (366)
Q Consensus 215 ~~i~~lr~~~~~pv~v-K~v~~~~d----~~aGad~I~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~i~vi~~GGI~~~~ 289 (366)
+.++.+|+..+-..++ =-+-+.++ .+.|+|+|.+.+ -..+.+.++++.++.++|+.+.||| +.+
T Consensus 176 ~~v~~aR~~~~~~~~Igvsv~tleea~~A~~~gaDyI~lD~----------~~~e~l~~~~~~~~~~i~i~AiGGI-t~~ 244 (277)
T PRK08072 176 KAVTSVREKLGHMVKIEVETETEEQVREAVAAGADIIMFDN----------RTPDEIREFVKLVPSAIVTEASGGI-TLE 244 (277)
T ss_pred HHHHHHHHhCCCCCEEEEEeCCHHHHHHHHHcCCCEEEECC----------CCHHHHHHHHHhcCCCceEEEECCC-CHH
Confidence 4588888887522222 23456666 889999998853 2336677777766446889999999 899
Q ss_pred HHHHHHHhCcCEEEecHHHH
Q 017781 290 DVFKALALGASGIFIGRPVV 309 (366)
Q Consensus 290 dv~kalalGAd~V~igr~~l 309 (366)
.+....+.|+|.+.+|.+..
T Consensus 245 ni~~~a~~Gvd~IAvg~l~~ 264 (277)
T PRK08072 245 NLPAYGGTGVDYISLGFLTH 264 (277)
T ss_pred HHHHHHHcCCCEEEEChhhc
Confidence 99999999999999998764
|
|
| >cd04723 HisA_HisF Phosphoribosylformimino-5-aminoimidazole carboxamide ribonucleotide (ProFAR) isomerase (HisA) and the cyclase subunit of imidazoleglycerol phosphate synthase (HisF) | Back alignment and domain information |
|---|
Probab=96.79 E-value=0.0044 Score=57.61 Aligned_cols=67 Identities=22% Similarity=0.308 Sum_probs=53.6
Q ss_pred HHcCCcEEEEcCCCccCCCCCcchHHHHHHHHHHcCCCceEEEecCCCCHHHHHHHHHhCcCEEEecHHHH
Q 017781 239 VQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFIGRPVV 309 (366)
Q Consensus 239 ~~aGad~I~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~i~vi~~GGI~~~~dv~kalalGAd~V~igr~~l 309 (366)
.+.|+|.+.+-.-.+. .+.....+.+.++.+.+ .+|+.+.||||+.+|+.+++.+||+-|.+|+..+
T Consensus 45 ~~~g~~~l~i~DLd~~--~~~~~n~~~i~~i~~~~--~~~v~vgGGir~~edv~~~l~~Ga~~viigt~~~ 111 (233)
T cd04723 45 KELGFRGLYIADLDAI--MGRGDNDEAIRELAAAW--PLGLWVDGGIRSLENAQEWLKRGASRVIVGTETL 111 (233)
T ss_pred HHCCCCEEEEEeCccc--cCCCccHHHHHHHHHhC--CCCEEEecCcCCHHHHHHHHHcCCCeEEEcceec
Confidence 5668888886542221 13455778888888877 6899999999999999999999999999999654
|
The ProFAR isomerase catalyzes the fourth step in histidine biosynthesis, an isomerisation of the aminoaldose moiety of ProFAR to the aminoketose of PRFAR (N-(5'-phospho-D-1'-ribulosylformimino)-5-amino-1-(5''-phospho-ribosyl)-4-imidazolecarboxamide). In bacteria and archaea, ProFAR isomerase is encoded by the HisA gene. The Imidazole glycerol phosphate synthase (IGPS) catalyzes the fifth step of histidine biosynthesis, the formation of the imidazole ring. IGPS converts N1-(5'-phosphoribulosyl)-formimino-5-aminoimidazole-4-carboxamide ribonucleotide (PRFAR) to imidazole glycerol phosphate (ImGP) and 5'-(5-aminoimidazole-4-carboxamide) ribonucleotide (AICAR). This conversion involves two tightly coupled reactions in distinct active sites of IGPS. The two catalytic domains can be fused, like in fungi and pl |
| >COG0800 Eda 2-keto-3-deoxy-6-phosphogluconate aldolase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=96.78 E-value=0.024 Score=51.58 Aligned_cols=164 Identities=18% Similarity=0.179 Sum_probs=101.6
Q ss_pred eeecCCHHHHHHHHHHHHHcCCCEEEEecCCCCCcchhHHHhhhcCCCCccccccccccccCCCccccchhhHHHhhhcc
Q 017781 129 LYVYKDRNVVAQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLTLKNFQGLDLGKMDEANDSGLAAYVAGQI 208 (366)
Q Consensus 129 ly~~~d~~~~~~~l~ra~~~G~~ai~vtvd~p~~g~r~~d~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 208 (366)
+....+.+....+++.+-+.|+++|-||+++|....-.+.++..+. . .... ..-................++ .
T Consensus 18 Vlr~~~~e~a~~~a~Ali~gGi~~IEITl~sp~a~e~I~~l~~~~p--~-~lIG-AGTVL~~~q~~~a~~aGa~fi---V 90 (211)
T COG0800 18 VIRGDDVEEALPLAKALIEGGIPAIEITLRTPAALEAIRALAKEFP--E-ALIG-AGTVLNPEQARQAIAAGAQFI---V 90 (211)
T ss_pred EEEeCCHHHHHHHHHHHHHcCCCeEEEecCCCCHHHHHHHHHHhCc--c-cEEc-cccccCHHHHHHHHHcCCCEE---E
Confidence 3345788888888988999999999999999988776677766653 1 1110 000000000000000011111 1
Q ss_pred CCCCCHHHHHHHHHhcCCCEEEEeccCHHH----HHcCCcEEEEcCCCccCCCCCcchHHHHHHHHHHcCCCceEEEecC
Q 017781 209 DRSLSWKDVKWLQTITKLPILVKGVLTAED----VQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGG 284 (366)
Q Consensus 209 d~~~~~~~i~~lr~~~~~pv~vK~v~~~~d----~~aGad~I~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~i~vi~~GG 284 (366)
.|.++-+.++..+. .++| ++=|+.|+-+ .++|++.+.+.-... .+|+..+..+ +....+++++-.||
T Consensus 91 sP~~~~ev~~~a~~-~~ip-~~PG~~TptEi~~Ale~G~~~lK~FPa~~---~Gg~~~~ka~----~gP~~~v~~~pTGG 161 (211)
T COG0800 91 SPGLNPEVAKAANR-YGIP-YIPGVATPTEIMAALELGASALKFFPAEV---VGGPAMLKAL----AGPFPQVRFCPTGG 161 (211)
T ss_pred CCCCCHHHHHHHHh-CCCc-ccCCCCCHHHHHHHHHcChhheeecCccc---cCcHHHHHHH----cCCCCCCeEeecCC
Confidence 35566666666555 4777 4457788877 999999999864321 1233222222 11123689999999
Q ss_pred CCCHHHHHHHHHhCcCEEEecHHHH
Q 017781 285 VRRGTDVFKALALGASGIFIGRPVV 309 (366)
Q Consensus 285 I~~~~dv~kalalGAd~V~igr~~l 309 (366)
|. ...+...+++|+.+|++|+-+.
T Consensus 162 Vs-~~N~~~yla~gv~avG~Gs~l~ 185 (211)
T COG0800 162 VS-LDNAADYLAAGVVAVGLGSWLV 185 (211)
T ss_pred CC-HHHHHHHHhCCceEEecCcccc
Confidence 95 5599999999999999998665
|
|
| >PRK05718 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional | Back alignment and domain information |
|---|
Probab=96.77 E-value=0.047 Score=50.11 Aligned_cols=114 Identities=19% Similarity=0.274 Sum_probs=81.5
Q ss_pred eEEEeeecCCHHHHHHHHHHHHHcCCCEEEEecCCCCCcchhHHHhhhcCCCCccccccccccccCCCccccchhhHHHh
Q 017781 125 RFFQLYVYKDRNVVAQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLTLKNFQGLDLGKMDEANDSGLAAYV 204 (366)
Q Consensus 125 ~~~Qly~~~d~~~~~~~l~ra~~~G~~ai~vtvd~p~~g~r~~d~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 204 (366)
..+-+....+.+...++++.+.+.|++.+-||++.|.
T Consensus 16 ~~iaV~r~~~~~~a~~i~~al~~~Gi~~iEitl~~~~------------------------------------------- 52 (212)
T PRK05718 16 PVVPVIVINKLEDAVPLAKALVAGGLPVLEVTLRTPA------------------------------------------- 52 (212)
T ss_pred CEEEEEEcCCHHHHHHHHHHHHHcCCCEEEEecCCcc-------------------------------------------
Confidence 3555666788888889999999999999999866431
Q ss_pred hhccCCCCCHHHHHHHHHhcC-CCEEEEeccCHHH----HHcCCcEEEEcCCCccCCCCCcchHHHHHHHHHHcCCCceE
Q 017781 205 AGQIDRSLSWKDVKWLQTITK-LPILVKGVLTAED----VQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPV 279 (366)
Q Consensus 205 ~~~~d~~~~~~~i~~lr~~~~-~pv~vK~v~~~~d----~~aGad~I~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~i~v 279 (366)
..+.|+.+++..+ +-|..-.+.+.++ .++|+|+++.-+. ..+.+..+.+ . .+|+
T Consensus 53 --------~~~~I~~l~~~~p~~~IGAGTVl~~~~a~~a~~aGA~FivsP~~----------~~~vi~~a~~-~--~i~~ 111 (212)
T PRK05718 53 --------ALEAIRLIAKEVPEALIGAGTVLNPEQLAQAIEAGAQFIVSPGL----------TPPLLKAAQE-G--PIPL 111 (212)
T ss_pred --------HHHHHHHHHHHCCCCEEEEeeccCHHHHHHHHHcCCCEEECCCC----------CHHHHHHHHH-c--CCCE
Confidence 2345777777764 4455556677776 9999999974331 2244544443 2 4444
Q ss_pred EEecCCCCHHHHHHHHHhCcCEEEe
Q 017781 280 FLDGGVRRGTDVFKALALGASGIFI 304 (366)
Q Consensus 280 i~~GGI~~~~dv~kalalGAd~V~i 304 (366)
+ =|+.|+.++..++.+||+.|-+
T Consensus 112 i--PG~~TptEi~~a~~~Ga~~vKl 134 (212)
T PRK05718 112 I--PGVSTPSELMLGMELGLRTFKF 134 (212)
T ss_pred e--CCCCCHHHHHHHHHCCCCEEEE
Confidence 4 4799999999999999999877
|
|
| >TIGR01769 GGGP geranylgeranylglyceryl phosphate synthase | Back alignment and domain information |
|---|
Probab=96.75 E-value=0.0076 Score=54.95 Aligned_cols=62 Identities=23% Similarity=0.349 Sum_probs=48.5
Q ss_pred HHcCCcEEEEcCCCccCCCCCcchHHHHHHHHHHcCCCceEEEecCCCCHHHHHHHHHhCcCEEEec
Q 017781 239 VQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFIG 305 (366)
Q Consensus 239 ~~aGad~I~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~i~vi~~GGI~~~~dv~kalalGAd~V~ig 305 (366)
...|++.|.+-...|. ..+...+.+.++++.+ ++|+++.||||+.+++.+++..|||.|.+|
T Consensus 144 ~~~G~~~i~Le~~sGa---~~~v~~e~i~~Vk~~~--~~Pv~vGGGIrs~e~a~~l~~~GAD~VVVG 205 (205)
T TIGR01769 144 KYFGMKWVYLEAGSGA---SYPVNPETISLVKKAS--GIPLIVGGGIRSPEIAYEIVLAGADAIVTG 205 (205)
T ss_pred HHcCCCEEEEEcCCCC---CCCCCHHHHHHHHHhh--CCCEEEeCCCCCHHHHHHHHHcCCCEEEeC
Confidence 4567888876442222 1223577888888877 799999999999999999999999999987
|
This model represents geranylgeranylglyceryl phosphate synthase which catalyzes the first committed step in the synthesis of ether-linked membrane lipids in archaea. The active enzyme is reported to be a homopentamer in Methanobacterium thermoautotrophicum but is reported to be a homodimer in Thermoplasma acidophilum. |
| >TIGR00343 pyridoxal 5'-phosphate synthase, synthase subunit Pdx1 | Back alignment and domain information |
|---|
Probab=96.74 E-value=0.043 Score=52.08 Aligned_cols=80 Identities=18% Similarity=0.132 Sum_probs=58.1
Q ss_pred CHHHHHHHHHhcCCCEEEEeccC-HHH----HHcCCcEEEEcCCCccCCCCCcchHHHHHHHHHHcCCCceEEEecCCCC
Q 017781 213 SWKDVKWLQTITKLPILVKGVLT-AED----VQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRR 287 (366)
Q Consensus 213 ~~~~i~~lr~~~~~pv~vK~v~~-~~d----~~aGad~I~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~i~vi~~GGI~~ 287 (366)
+.+.|+++++.+++||+-|.-.. ..+ .++|+|.|.-|..- .|.-+....+++.. ++|++ .|+++
T Consensus 55 ~p~~I~~I~~~V~iPVig~~kigh~~Ea~~L~~~GvDiIDeTe~l-------rPade~~~~~K~~f--~vpfm--ad~~~ 123 (287)
T TIGR00343 55 DPKMIKEIMDAVSIPVMAKVRIGHFVEAQILEALGVDYIDESEVL-------TPADWTFHIDKKKF--KVPFV--CGARD 123 (287)
T ss_pred CHHHHHHHHHhCCCCEEEEeeccHHHHHHHHHHcCCCEEEccCCC-------CcHHHHHHHHHHHc--CCCEE--ccCCC
Confidence 56789999999999999986543 333 99999999643321 12334445454433 45555 57999
Q ss_pred HHHHHHHHHhCcCEEE
Q 017781 288 GTDVFKALALGASGIF 303 (366)
Q Consensus 288 ~~dv~kalalGAd~V~ 303 (366)
-++++.++.+|||.|.
T Consensus 124 l~EAlrai~~GadmI~ 139 (287)
T TIGR00343 124 LGEALRRINEGAAMIR 139 (287)
T ss_pred HHHHHHHHHCCCCEEe
Confidence 9999999999999885
|
This protein had been believed to be a singlet oxygen resistance protein. Subsequent work showed that it is a protein of pyridoxine (vitamin B6) biosynthesis, and that pyridoxine quenches the highly toxic singlet form of oxygen produced by light in the presence of certain chemicals. |
| >PRK08385 nicotinate-nucleotide pyrophosphorylase; Provisional | Back alignment and domain information |
|---|
Probab=96.74 E-value=0.015 Score=55.45 Aligned_cols=83 Identities=22% Similarity=0.289 Sum_probs=61.0
Q ss_pred HHHHHHHHhcC-CCEEEEeccCHHH----HHcCCcEEEEcCCCccCCCCCcchHHHHHHHHHHc-----CCCceEEEecC
Q 017781 215 KDVKWLQTITK-LPILVKGVLTAED----VQAGAAGIIVSNHGARQLDYVPATIMALEEVVKAT-----QGRIPVFLDGG 284 (366)
Q Consensus 215 ~~i~~lr~~~~-~pv~vK~v~~~~d----~~aGad~I~vs~~gg~~~~~~~~~~~~l~~i~~~~-----~~~i~vi~~GG 284 (366)
+.++.+|+... .+ |.=.+-+.++ .++|+|.|.+.|. +.+.+.++++.+ +.++.+.++||
T Consensus 171 ~av~~~r~~~~~~k-IeVEv~~leea~~a~~agaDiI~LDn~----------~~e~l~~~v~~l~~~~~~~~~~leaSGG 239 (278)
T PRK08385 171 EAIRRAKEFSVYKV-VEVEVESLEDALKAAKAGADIIMLDNM----------TPEEIREVIEALKREGLRERVKIEVSGG 239 (278)
T ss_pred HHHHHHHHhCCCCc-EEEEeCCHHHHHHHHHcCcCEEEECCC----------CHHHHHHHHHHHHhcCcCCCEEEEEECC
Confidence 34778887653 44 3334567776 9999999988883 233444444433 24788999999
Q ss_pred CCCHHHHHHHHHhCcCEEEecHHHH
Q 017781 285 VRRGTDVFKALALGASGIFIGRPVV 309 (366)
Q Consensus 285 I~~~~dv~kalalGAd~V~igr~~l 309 (366)
| +.+.+.++...|+|.+.+|.++.
T Consensus 240 I-~~~ni~~yA~tGvD~Is~galt~ 263 (278)
T PRK08385 240 I-TPENIEEYAKLDVDVISLGALTH 263 (278)
T ss_pred C-CHHHHHHHHHcCCCEEEeChhhc
Confidence 9 89999999999999999998764
|
|
| >PF01884 PcrB: PcrB family; InterPro: IPR008205 This entry represents geranylgeranylglyceryl phosphate (GGGP) synthase, which is a prenyltransferase that catalyses the transfer of the geranylgeranyl moiety of geranylgeranyl diphosphate (GGPP) to the C3 hydroxyl of sn-glycerol-1-phosphate (G1P) | Back alignment and domain information |
|---|
Probab=96.71 E-value=0.0041 Score=57.53 Aligned_cols=66 Identities=23% Similarity=0.354 Sum_probs=43.0
Q ss_pred HcCCcEEEEcCCCccCCCCCcchHHHHHHHHHHcCCCceEEEecCCCCHHHHHHHHHhCcCEEEecHHHHH
Q 017781 240 QAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFIGRPVVY 310 (366)
Q Consensus 240 ~aGad~I~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~i~vi~~GGI~~~~dv~kalalGAd~V~igr~~l~ 310 (366)
=.|...|.+-...|+ .++.+ +.+.++++.+ .++|+|..||||+++++.+++..|||.|.+|+.|-.
T Consensus 151 ~~g~~~iYLEaGSGa---~~~v~-~~v~~~~~~~-~~~~LivGGGIrs~e~A~~~~~aGAD~IVvGn~iee 216 (230)
T PF01884_consen 151 YLGMPIIYLEAGSGA---YGPVP-EEVIAAVKKL-SDIPLIVGGGIRSPEQAREMAEAGADTIVVGNAIEE 216 (230)
T ss_dssp HTT-SEEEEE--TTS---SS-HH-HHHHHHHHHS-SSSEEEEESS--SHHHHHHHHCTTSSEEEESCHHHH
T ss_pred HhCCCEEEEEeCCCC---CCCcc-HHHHHHHHhc-CCccEEEeCCcCCHHHHHHHHHCCCCEEEECCEEEE
Confidence 345566665432221 12222 3344555555 389999999999999999999999999999998854
|
This reaction is the first ether-bond-formation step in the biosynthesis of archaeal membrane lipids. This entry also matches putative glycerol-1-phosphate prenyltransferases that may catalyse the transfer of a prenyl moiety to sn-glycerol-1-phosphate (G1P) []. Some of the prokaryotic proteins in this family are related to pcrB. The Staphylococcus aureus chromosomal gene pcrA encodes a protein with significant similarity (40% identity) to two Escherichia coli helicases: the helicase II encoded by the uvrD gene and the Rep helicase. PcrB gene seems to belong to an operon containing at least one other gene, pcrBA, downstream from pcrB []. The PcrB proteins often contain an FMN binding site although the function of these proteins is still unknown.; GO: 0016765 transferase activity, transferring alkyl or aryl (other than methyl) groups; PDB: 1VIZ_A 2F6X_B 2F6U_B 3VKD_A 3VKA_A 3VK5_B 3VKC_B 3VKB_B. |
| >cd02812 PcrB_like PcrB_like proteins | Back alignment and domain information |
|---|
Probab=96.61 E-value=0.0052 Score=56.59 Aligned_cols=65 Identities=20% Similarity=0.261 Sum_probs=50.3
Q ss_pred HHcCCcEEEEcCCCccCCCCCcchHHHHHHHHHHcCCCceEEEecCCCCHHHHHHHHHhCcCEEEecHHHHH
Q 017781 239 VQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFIGRPVVY 310 (366)
Q Consensus 239 ~~aGad~I~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~i~vi~~GGI~~~~dv~kalalGAd~V~igr~~l~ 310 (366)
...|...|.+. ..|. ....+.+..+++.+. ++|+++.||||+.+++.+++.+|||.|.+|+.+..
T Consensus 145 e~~g~~ivyLe-~SG~-----~~~~e~I~~v~~~~~-~~pl~vGGGIrs~e~a~~l~~aGAD~VVVGsai~~ 209 (219)
T cd02812 145 EYLGMPIVYLE-YSGA-----YGPPEVVRAVKKVLG-DTPLIVGGGIRSGEQAKEMAEAGADTIVVGNIVEE 209 (219)
T ss_pred HHcCCeEEEeC-CCCC-----cCCHHHHHHHHHhcC-CCCEEEeCCCCCHHHHHHHHHcCCCEEEECchhhC
Confidence 55566666666 2221 245677777777653 68999999999999999999999999999998864
|
One member of this family, a protein from Archaeoglobus fulgidus, has been characterized as a (S)-3-O-geranylgeranylglyceryl phosphate synthase (AfGGGPS). AfGGGPS catalyzes the formation of an ether linkage between sn-glycerol-1-phosphate (G1P) and geranylgeranyl diphosphate (GGPP), the committed step in archaeal lipid biosynthesis. Therefore, it has been proposed that PcrB-like proteins are either prenyltransferases or are involved in lipoteichoic acid biosynthesis although the exact function is still unknown. |
| >TIGR01768 GGGP-family geranylgeranylglyceryl phosphate synthase family protein | Back alignment and domain information |
|---|
Probab=96.61 E-value=0.009 Score=55.12 Aligned_cols=50 Identities=24% Similarity=0.349 Sum_probs=42.7
Q ss_pred cchHHHHHHHHHHcCCCceEEEecCCCCHHHHHHHHHhCcCEEEecHHHHH
Q 017781 260 PATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFIGRPVVY 310 (366)
Q Consensus 260 ~~~~~~l~~i~~~~~~~i~vi~~GGI~~~~dv~kalalGAd~V~igr~~l~ 310 (366)
+-..+.+..+++.++ ++||+..||||+.+++.+++.+|||.|.+|+.+..
T Consensus 164 ~v~~e~i~~v~~~~~-~~pl~vGGGIrs~e~a~~l~~aGAD~VVVGs~~~~ 213 (223)
T TIGR01768 164 PVPPELVAEVKKVLD-KARLFVGGGIRSVEKAREMAEAGADTIVTGNVIEE 213 (223)
T ss_pred CcCHHHHHHHHHHcC-CCCEEEecCCCCHHHHHHHHHcCCCEEEECcHHhh
Confidence 345677888877663 69999999999999999999999999999998764
|
This model represents a family of sequences including geranylgeranylglyceryl phosphate synthase which catalyzes the first committed step in the synthesis of ether-linked membrane lipids in archaea. The clade of bacterial sequences may have the same function or a closely related function. This model supercedes TIGR00265, which has been retired. |
| >COG0352 ThiE Thiamine monophosphate synthase [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=96.60 E-value=0.041 Score=50.39 Aligned_cols=91 Identities=19% Similarity=0.204 Sum_probs=64.5
Q ss_pred HHHHHhcCCCEEEEec-cCHHH----HHcCCcEEEEcCCCccC--CCCCcchHHHHHHHHHHcCCCceEEEecCCCCHHH
Q 017781 218 KWLQTITKLPILVKGV-LTAED----VQAGAAGIIVSNHGARQ--LDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTD 290 (366)
Q Consensus 218 ~~lr~~~~~pv~vK~v-~~~~d----~~aGad~I~vs~~gg~~--~~~~~~~~~~l~~i~~~~~~~i~vi~~GGI~~~~d 290 (366)
...++..+-..++... -+.++ .+.|+|+|.++.-..+. .+..+..++.+.++.+.. .+|+++-||| +.+.
T Consensus 95 ~~ar~~~~~~~iIG~S~h~~eea~~A~~~g~DYv~~GpifpT~tK~~~~~~G~~~l~~~~~~~--~iP~vAIGGi-~~~n 171 (211)
T COG0352 95 AEARELLGPGLIIGLSTHDLEEALEAEELGADYVGLGPIFPTSTKPDAPPLGLEGLREIRELV--NIPVVAIGGI-NLEN 171 (211)
T ss_pred HHHHHhcCCCCEEEeecCCHHHHHHHHhcCCCEEEECCcCCCCCCCCCCccCHHHHHHHHHhC--CCCEEEEcCC-CHHH
Confidence 4444544433444433 35555 67889999886644433 222334567888887766 6999999999 6899
Q ss_pred HHHHHHhCcCEEEecHHHHHH
Q 017781 291 VFKALALGASGIFIGRPVVYS 311 (366)
Q Consensus 291 v~kalalGAd~V~igr~~l~~ 311 (366)
+...++.||++|.+-|.++.+
T Consensus 172 v~~v~~~Ga~gVAvvsai~~a 192 (211)
T COG0352 172 VPEVLEAGADGVAVVSAITSA 192 (211)
T ss_pred HHHHHHhCCCeEEehhHhhcC
Confidence 999999999999999998753
|
|
| >PLN02446 (5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase | Back alignment and domain information |
|---|
Probab=96.59 E-value=0.018 Score=54.33 Aligned_cols=65 Identities=18% Similarity=0.234 Sum_probs=51.8
Q ss_pred HHcCCcEEEEcCCC--ccCCCCCcchHHHHHHHHHHcCCCceEEEecCCCCHHHHHHHHHhC--cCEEEecHHH
Q 017781 239 VQAGAAGIIVSNHG--ARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALG--ASGIFIGRPV 308 (366)
Q Consensus 239 ~~aGad~I~vs~~g--g~~~~~~~~~~~~l~~i~~~~~~~i~vi~~GGI~~~~dv~kalalG--Ad~V~igr~~ 308 (366)
.+.|+..|++..-. |+ -.| +.++.+.++++.+ ++|||++|||++-+|+.+...+| ...|.+|+++
T Consensus 173 ~~~g~~eii~TdI~rDGt--l~G-~d~el~~~l~~~~--~ipVIASGGv~sleDi~~L~~~g~g~~gvIvGkAl 241 (262)
T PLN02446 173 LAAYCDEFLVHGVDVEGK--RLG-IDEELVALLGEHS--PIPVTYAGGVRSLDDLERVKVAGGGRVDVTVGSAL 241 (262)
T ss_pred HHhCCCEEEEEEEcCCCc--ccC-CCHHHHHHHHhhC--CCCEEEECCCCCHHHHHHHHHcCCCCEEEEEEeeH
Confidence 77889988875421 21 112 4678888888887 89999999999999999998884 6889999997
|
|
| >PF01729 QRPTase_C: Quinolinate phosphoribosyl transferase, C-terminal domain; InterPro: IPR002638 Quinolinate phosphoribosyl transferase (QPRTase) or nicotinate-nucleotide pyrophosphorylase 2 | Back alignment and domain information |
|---|
Probab=96.59 E-value=0.016 Score=51.36 Aligned_cols=88 Identities=19% Similarity=0.223 Sum_probs=59.5
Q ss_pred HHHHHHHHhcC-CCEEEEeccCHHH----HHcCCcEEEEcCCCccCCCCCcchHHHHHHHHHHcCCCceEEEecCCCCHH
Q 017781 215 KDVKWLQTITK-LPILVKGVLTAED----VQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGT 289 (366)
Q Consensus 215 ~~i~~lr~~~~-~pv~vK~v~~~~d----~~aGad~I~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~i~vi~~GGI~~~~ 289 (366)
+.++.+|+..+ .+-+.=.+.+.++ .++|+|.|-+.|. .+..+..+.+..+....++.|.++||| +.+
T Consensus 68 ~av~~~~~~~~~~~~I~VEv~~~ee~~ea~~~g~d~I~lD~~-------~~~~~~~~v~~l~~~~~~v~ie~SGGI-~~~ 139 (169)
T PF01729_consen 68 EAVKAARQAAPEKKKIEVEVENLEEAEEALEAGADIIMLDNM-------SPEDLKEAVEELRELNPRVKIEASGGI-TLE 139 (169)
T ss_dssp HHHHHHHHHSTTTSEEEEEESSHHHHHHHHHTT-SEEEEES--------CHHHHHHHHHHHHHHTTTSEEEEESSS-STT
T ss_pred HHHHHHHHhCCCCceEEEEcCCHHHHHHHHHhCCCEEEecCc-------CHHHHHHHHHHHhhcCCcEEEEEECCC-CHH
Confidence 45888888774 3323335566665 9999999999883 333332222222345567999999999 678
Q ss_pred HHHHHHHhCcCEEEecHHHHH
Q 017781 290 DVFKALALGASGIFIGRPVVY 310 (366)
Q Consensus 290 dv~kalalGAd~V~igr~~l~ 310 (366)
.+.++...|+|.+.+|.....
T Consensus 140 ni~~ya~~gvD~isvg~~~~~ 160 (169)
T PF01729_consen 140 NIAEYAKTGVDVISVGSLTHS 160 (169)
T ss_dssp THHHHHHTT-SEEEECHHHHS
T ss_pred HHHHHHhcCCCEEEcChhhcC
Confidence 899999999999999986543
|
4.2.19 from EC is involved in the de novo synthesis of NAD in both prokaryotes and eukaryotes. It catalyses the reaction of quinolinic acid with 5-phosphoribosyl-1-pyrophosphate (PRPP) in the presence of Mg2+ to give rise to nicotinic acid mononucleotide (NaMN), pyrophosphate and carbon dioxide [, ]. Unlike IPR004393 from INTERPRO, this domain also includes the molybdenum transport system protein ModD.; GO: 0004514 nicotinate-nucleotide diphosphorylase (carboxylating) activity, 0009435 NAD biosynthetic process; PDB: 3C2O_A 3C2F_A 3C2E_A 3C2R_A 3C2V_A 1QPN_E 1QPO_A 1QPQ_F 1QPR_E 2I14_D .... |
| >PRK13586 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Provisional | Back alignment and domain information |
|---|
Probab=96.58 E-value=0.015 Score=54.07 Aligned_cols=68 Identities=21% Similarity=0.194 Sum_probs=52.3
Q ss_pred HHcCCcEEEEcCCCccCCCCCcchHHHHHHHHHHcCCCceEEEecCCCCHHHHHHHHHhCcCEEEecHHHHH
Q 017781 239 VQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFIGRPVVY 310 (366)
Q Consensus 239 ~~aGad~I~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~i~vi~~GGI~~~~dv~kalalGAd~V~igr~~l~ 310 (366)
.+.|+|.+++-.-.+.. +.....+.+.++.+.. ..|+.+.||||+.+|+.+++.+||+-|.+|+..+.
T Consensus 40 ~~~ga~~lhivDLd~a~--~~~~n~~~i~~i~~~~--~~~v~vGGGIrs~e~~~~~l~~Ga~kvvigt~a~~ 107 (232)
T PRK13586 40 YNEGYTRIHVVDLDAAE--GVGNNEMYIKEISKIG--FDWIQVGGGIRDIEKAKRLLSLDVNALVFSTIVFT 107 (232)
T ss_pred HHCCCCEEEEEECCCcC--CCcchHHHHHHHHhhC--CCCEEEeCCcCCHHHHHHHHHCCCCEEEECchhhC
Confidence 56788888865433221 3345668888888743 25999999999999999999999999999997653
|
|
| >PF09370 TIM-br_sig_trns: TIM-barrel signal transduction protein; InterPro: IPR009215 Members of this family are predicted to have a TIM barrel fold, based on PSI-BLAST analysis (iteration 4) and on SCOP prediction (using SMART) | Back alignment and domain information |
|---|
Probab=96.57 E-value=0.15 Score=47.97 Aligned_cols=191 Identities=16% Similarity=0.219 Sum_probs=92.6
Q ss_pred CceEecccccccccCChhhHHHHHHHHHcCCceecC------------CCCCC---------CH---HHHhccCC-CceE
Q 017781 72 MPIMIAPTAMQKMAHPEGEYATARAASAAGTIMTLS------------SWSTS---------SV---EEVASTGP-GIRF 126 (366)
Q Consensus 72 ~Pi~iApm~~~~l~~~~~e~~la~aa~~~G~~~~vs------------~~~~~---------~~---e~i~~~~~-~~~~ 126 (366)
.||+-+..| .+ -.|+.+++.|+.+.+- +.+.. .+ +||....+ .|.+
T Consensus 15 ~pIig~gaG-tG--------lsAk~ae~gGaDlI~~ynsGrfR~~G~~SlagllpygnaN~iv~em~~eiLp~v~~tPVi 85 (268)
T PF09370_consen 15 KPIIGAGAG-TG--------LSAKCAEKGGADLILIYNSGRFRMAGRGSLAGLLPYGNANEIVMEMAREILPVVKDTPVI 85 (268)
T ss_dssp --EEEEEES-SH--------HHHHHHHHTT-SEEEE-HHHHHHHTT--GGGGGBTEEEHHHHHHHHHHHHGGG-SSS-EE
T ss_pred CceEEEeec-cc--------hhhHHHHhcCCCEEEEecchhHhhCCCcchhhhhcccCHhHHHHHHHHhhhhhccCCCEE
Confidence 577766643 22 4899999999988861 11110 01 23333333 5777
Q ss_pred EEeeecCCHHHHHHHHHHHHHcCCCEEEEecCCCCCcchhHHHhhhcCCCCccccccccccccCCCccccchhhHHHhhh
Q 017781 127 FQLYVYKDRNVVAQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLTLKNFQGLDLGKMDEANDSGLAAYVAG 206 (366)
Q Consensus 127 ~Qly~~~d~~~~~~~l~ra~~~G~~ai~vtvd~p~~g~r~~d~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 206 (366)
+=+........+...++++++.|+.++. |.|..|.-.-..|+. +.
T Consensus 86 aGv~atDP~~~~~~fl~~lk~~Gf~GV~---NfPTvgliDG~fR~~-------------------------------LE- 130 (268)
T PF09370_consen 86 AGVCATDPFRDMDRFLDELKELGFSGVQ---NFPTVGLIDGQFRQN-------------------------------LE- 130 (268)
T ss_dssp EEE-TT-TT--HHHHHHHHHHHT-SEEE---E-S-GGG--HHHHHH-------------------------------HH-
T ss_pred EEecCcCCCCcHHHHHHHHHHhCCceEE---ECCcceeeccHHHHH-------------------------------HH-
Confidence 7776544445678889999999999975 445443221111111 11
Q ss_pred ccCCCCCHH-HHHHHHHhc-CCCEEEEeccCHHH----HHcCCcEEEEcC---CCccC-CCCCcc---hHHHHHHHHH--
Q 017781 207 QIDRSLSWK-DVKWLQTIT-KLPILVKGVLTAED----VQAGAAGIIVSN---HGARQ-LDYVPA---TIMALEEVVK-- 271 (366)
Q Consensus 207 ~~d~~~~~~-~i~~lr~~~-~~pv~vK~v~~~~d----~~aGad~I~vs~---~gg~~-~~~~~~---~~~~l~~i~~-- 271 (366)
.....++ +|+-||..- .--+.+--+.+.++ .++|||.|+++- .||.. .....+ ..+.+.++.+
T Consensus 131 --e~Gmgy~~EVemi~~A~~~gl~T~~yvf~~e~A~~M~~AGaDiiv~H~GlT~gG~~Ga~~~~sl~~a~~~~~~i~~aa 208 (268)
T PF09370_consen 131 --ETGMGYDREVEMIRKAHEKGLFTTAYVFNEEQARAMAEAGADIIVAHMGLTTGGSIGAKTALSLEEAAERIQEIFDAA 208 (268)
T ss_dssp --HTT--HHHHHHHHHHHHHTT-EE--EE-SHHHHHHHHHHT-SEEEEE-SS----------S--HHHHHHHHHHHHHHH
T ss_pred --hcCCCHHHHHHHHHHHHHCCCeeeeeecCHHHHHHHHHcCCCEEEecCCccCCCCcCccccCCHHHHHHHHHHHHHHH
Confidence 1122332 355555443 12344555678887 999999999863 23321 112222 1223333333
Q ss_pred -HcCCC-ceEEEecCCCCHHHHHHHHHh--CcCEEEecHHH
Q 017781 272 -ATQGR-IPVFLDGGVRRGTDVFKALAL--GASGIFIGRPV 308 (366)
Q Consensus 272 -~~~~~-i~vi~~GGI~~~~dv~kalal--GAd~V~igr~~ 308 (366)
.++.+ +.++--|-|.+++|+...+.. |+++..=|+.+
T Consensus 209 ~~v~~dii~l~hGGPI~~p~D~~~~l~~t~~~~Gf~G~Ss~ 249 (268)
T PF09370_consen 209 RAVNPDIIVLCHGGPIATPEDAQYVLRNTKGIHGFIGASSM 249 (268)
T ss_dssp HCC-TT-EEEEECTTB-SHHHHHHHHHH-TTEEEEEESTTT
T ss_pred HHhCCCeEEEEeCCCCCCHHHHHHHHhcCCCCCEEecccch
Confidence 33344 445555669999999999983 57887777654
|
Interestingly, this novel domain also exists as an N-terminal domain of sigma54-dependent transcriptional activators (enhancer-binding proteins). Because sigma54 dependent activators typically have a three-domain structure: the variable N-terminal regulatory (activation) domain involved in signal recognition/receiving, the central AAA-type ATPase domain, and the DNA-binding domain (see PIRSF003187 from PIRSF, PIRSF005263 from PIRSF, PIRSF003184 from PIRSF, PIRSF005263 from PIRSF, IPR014443 from INTERPRO for details), the proteins of the current entry may be predicted to play a role in signal recognition/receiving and signal transduction.; PDB: 2P10_C. |
| >PF04131 NanE: Putative N-acetylmannosamine-6-phosphate epimerase; InterPro: IPR007260 This family represents a putative ManNAc-6-P-to-GlcNAc-6P epimerase in the N-acetylmannosamine (ManNAc) utilization pathway found mainly in pathogenic bacteria for the reaction: |
Back alignment and domain information |
|---|
Probab=96.55 E-value=0.029 Score=50.27 Aligned_cols=85 Identities=20% Similarity=0.216 Sum_probs=54.0
Q ss_pred CHHHHHHHHHhcCCCEE--EEec---------cCHHH----HHcCCcEEEEcCCCccCCCCCcchHHHHHHHHHHcCCCc
Q 017781 213 SWKDVKWLQTITKLPIL--VKGV---------LTAED----VQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRI 277 (366)
Q Consensus 213 ~~~~i~~lr~~~~~pv~--vK~v---------~~~~d----~~aGad~I~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~i 277 (366)
..++|+.+|+.+++||| +|.. ++.++ .++|+|.|-++....... .+..+.+.++++.. .
T Consensus 20 ~~~dI~aik~~v~lPIIGi~K~~y~~~~V~ITPT~~ev~~l~~aGadIIAlDaT~R~Rp---~~l~~li~~i~~~~---~ 93 (192)
T PF04131_consen 20 GVEDIRAIKKAVDLPIIGIIKRDYPDSDVYITPTLKEVDALAEAGADIIALDATDRPRP---ETLEELIREIKEKY---Q 93 (192)
T ss_dssp SHHHHHHHHTTB-S-EEEE-B-SBTTSS--BS-SHHHHHHHHHCT-SEEEEE-SSSS-S---S-HHHHHHHHHHCT---S
T ss_pred CHHHHHHHHHhcCCCEEEEEeccCCCCCeEECCCHHHHHHHHHcCCCEEEEecCCCCCC---cCHHHHHHHHHHhC---c
Confidence 56789999999999976 3421 34555 999999999987543211 33445666666532 5
Q ss_pred eEEEecCCCCHHHHHHHHHhCcCEEEec
Q 017781 278 PVFLDGGVRRGTDVFKALALGASGIFIG 305 (366)
Q Consensus 278 ~vi~~GGI~~~~dv~kalalGAd~V~ig 305 (366)
.+++| |.|-+|...|..+|+|.|.--
T Consensus 94 l~MAD--ist~ee~~~A~~~G~D~I~TT 119 (192)
T PF04131_consen 94 LVMAD--ISTLEEAINAAELGFDIIGTT 119 (192)
T ss_dssp EEEEE---SSHHHHHHHHHTT-SEEE-T
T ss_pred EEeee--cCCHHHHHHHHHcCCCEEEcc
Confidence 56655 899999999999999999643
|
; GO: 0047465 N-acylglucosamine-6-phosphate 2-epimerase activity, 0006051 N-acetylmannosamine metabolic process; PDB: 1Y0E_B 3IGS_A 1YXY_A 3Q58_B. |
| >PF02581 TMP-TENI: Thiamine monophosphate synthase/TENI; InterPro: IPR003733 Thiamine monophosphate synthase (TMP) (2 | Back alignment and domain information |
|---|
Probab=96.52 E-value=0.028 Score=50.01 Aligned_cols=74 Identities=20% Similarity=0.314 Sum_probs=53.5
Q ss_pred eccCHHH----HHcCCcEEEEcCCCccC--CCCCcchHHHHHHHHHHcCCCceEEEecCCCCHHHHHHHHHhCcCEEEec
Q 017781 232 GVLTAED----VQAGAAGIIVSNHGARQ--LDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFIG 305 (366)
Q Consensus 232 ~v~~~~d----~~aGad~I~vs~~gg~~--~~~~~~~~~~l~~i~~~~~~~i~vi~~GGI~~~~dv~kalalGAd~V~ig 305 (366)
-+-+.++ .+.|+|++.++.-.-+. .+..+..++.+.++.+.. ++||++-||| +.+++.+...+||++|.+-
T Consensus 101 S~h~~~e~~~a~~~g~dYv~~gpvf~T~sk~~~~~~g~~~l~~~~~~~--~~pv~AlGGI-~~~~i~~l~~~Ga~gvAvi 177 (180)
T PF02581_consen 101 SCHSLEEAREAEELGADYVFLGPVFPTSSKPGAPPLGLDGLREIARAS--PIPVYALGGI-TPENIPELREAGADGVAVI 177 (180)
T ss_dssp EESSHHHHHHHHHCTTSEEEEETSS--SSSSS-TTCHHHHHHHHHHHT--SSCEEEESS---TTTHHHHHHTT-SEEEES
T ss_pred ecCcHHHHHHhhhcCCCEEEECCccCCCCCccccccCHHHHHHHHHhC--CCCEEEEcCC-CHHHHHHHHHcCCCEEEEE
Confidence 4457766 66899999988643221 122344678888888877 7999999999 7999999999999999988
Q ss_pred HHH
Q 017781 306 RPV 308 (366)
Q Consensus 306 r~~ 308 (366)
+++
T Consensus 178 ~aI 180 (180)
T PF02581_consen 178 SAI 180 (180)
T ss_dssp HHH
T ss_pred eeC
Confidence 753
|
5.1.3 from EC) catalyzes the substitution of the pyrophosphate of 2-methyl-4-amino-5- hydroxymethylpyrimidine pyrophosphate by 4-methyl-5- (beta-hydroxyethyl)thiazole phosphate to yield thiamine phosphate in the thiamine biosynthesis pathway []. TENI, a protein from Bacillus subtilis that regulates the production of several extracellular enzymes by reducing alkaline protease production belongs to this group [].; GO: 0004789 thiamine-phosphate diphosphorylase activity, 0009228 thiamine biosynthetic process; PDB: 3NL5_A 3NL2_A 3NM1_A 3NM3_C 3NL6_B 3NL3_A 3CEU_A 3O63_B 3QH2_C 1YAD_D .... |
| >TIGR01919 hisA-trpF 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase/N-(5'phosphoribosyl)anthranilate isomerase | Back alignment and domain information |
|---|
Probab=96.51 E-value=0.01 Score=55.60 Aligned_cols=67 Identities=30% Similarity=0.222 Sum_probs=51.2
Q ss_pred HHcCCcEEEEcCCCccCCCCCcchHHHHHHHHHHcCCCceEEEecCCCCHHHHHHHHHhCcCEEEecHHHH
Q 017781 239 VQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFIGRPVV 309 (366)
Q Consensus 239 ~~aGad~I~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~i~vi~~GGI~~~~dv~kalalGAd~V~igr~~l 309 (366)
.+.|+..+.+.---+. .+.+...+.+.++.+.+ .+|+.+.|||||.+|+.+++.+||+-|.+|+..+
T Consensus 41 ~~~g~~~lhivDLd~a--~g~~~n~~~i~~i~~~~--~~~v~vgGGIrs~e~~~~~l~~Ga~~vvigT~a~ 107 (243)
T TIGR01919 41 EQGGAEWIHLVDLDAA--FGGGNNEMMLEEVVKLL--VVVEELSGGRRDDSSLRAALTGGRARVNGGTAAL 107 (243)
T ss_pred HhCCCeEEEEEECCCC--CCCcchHHHHHHHHHHC--CCCEEEcCCCCCHHHHHHHHHcCCCEEEECchhh
Confidence 3456666665421111 13445778899999887 6999999999999999999999999999999754
|
This model represents a bifunctional protein posessing both hisA (1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase) and trpF (N-(5'phosphoribosyl)anthranilate isomerase) activities. Thus, it is involved in both the histidine and tryptophan biosynthetic pathways. Enzymes with this property have been described only in the Actinobacteria (High-GC gram-positive). The enzyme is closely related to the monofunctional HisA proteins (TIGR00007) and in Actinobacteria, the classical monofunctional TrpF is generally absent. |
| >PRK12376 putative translaldolase; Provisional | Back alignment and domain information |
|---|
Probab=96.49 E-value=0.47 Score=44.28 Aligned_cols=96 Identities=19% Similarity=0.175 Sum_probs=69.4
Q ss_pred HHHHHHHHHhcCCCEEEEeccCHHH----HH--c--CCcEEEEcCCCccCCCCCcchHHHHHHHHHHcC--CCceEEEec
Q 017781 214 WKDVKWLQTITKLPILVKGVLTAED----VQ--A--GAAGIIVSNHGARQLDYVPATIMALEEVVKATQ--GRIPVFLDG 283 (366)
Q Consensus 214 ~~~i~~lr~~~~~pv~vK~v~~~~d----~~--a--Gad~I~vs~~gg~~~~~~~~~~~~l~~i~~~~~--~~i~vi~~G 283 (366)
.+.++.+++. ++++-+-.+.++.. .+ + |++.|.. .-||-.|.+...+..+.++++.+. .+..|++.+
T Consensus 102 l~Ai~~L~~~-GI~vn~T~vfs~~Qa~~a~~A~ag~ga~yisp--fvgR~dd~g~D~~~~i~~i~~i~~~~~~tkILaAS 178 (236)
T PRK12376 102 IPLIKKLSAD-GVKLNVTAIFTIEQVKEVVDALTPGVPAIVSV--FAGRIADTGVDPVPLMKEALAICHSKPGVELLWAS 178 (236)
T ss_pred HHHHHHHHHC-CCeEEEeeecCHHHHHHHHHHhcCCCCeEEEE--ecchhhhcCCCcHHHHHHHHHHHHhCCCcEEEEEe
Confidence 4456666664 88999999988876 23 3 5877653 345544556556666666665542 256777766
Q ss_pred CCCCHHHHHHHHHhCcCEEEecHHHHHHhh
Q 017781 284 GVRRGTDVFKALALGASGIFIGRPVVYSLA 313 (366)
Q Consensus 284 GI~~~~dv~kalalGAd~V~igr~~l~~l~ 313 (366)
||+..++.+++.+|||.|-+.-.++..+.
T Consensus 179 -iR~~~~v~~a~~~Gad~vTvp~~v~~~l~ 207 (236)
T PRK12376 179 -PREVYNIIQADQLGCDIITVTPDVLKKLP 207 (236)
T ss_pred -cCCHHHHHHHHHcCCCEEEcCHHHHHHHH
Confidence 99999999999999999999988877654
|
|
| >PRK14114 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Provisional | Back alignment and domain information |
|---|
Probab=96.46 E-value=0.011 Score=55.25 Aligned_cols=67 Identities=18% Similarity=0.219 Sum_probs=52.1
Q ss_pred HHcCCcEEEEcCCCccCCCCCcchHHHHHHHHHHcCCCceEEEecCCCCHHHHHHHHHhCcCEEEecHHHH
Q 017781 239 VQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFIGRPVV 309 (366)
Q Consensus 239 ~~aGad~I~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~i~vi~~GGI~~~~dv~kalalGAd~V~igr~~l 309 (366)
.+.|+|.+.+----+. ..+.+...+.+.++.+.+ .||.+.||||+-+|+.+.+.+||+-|.+|+..+
T Consensus 40 ~~~ga~~lhivDLd~a-~~g~~~n~~~i~~i~~~~---~~v~vGGGIrs~e~~~~~l~~Ga~rvvigT~a~ 106 (241)
T PRK14114 40 IEEGFTLIHVVDLSKA-IENSVENLPVLEKLSEFA---EHIQIGGGIRSLDYAEKLRKLGYRRQIVSSKVL 106 (241)
T ss_pred HHCCCCEEEEEECCCc-ccCCcchHHHHHHHHhhc---CcEEEecCCCCHHHHHHHHHCCCCEEEECchhh
Confidence 5678888876432111 123446788899998875 599999999999999999999999999998654
|
|
| >PRK06106 nicotinate-nucleotide pyrophosphorylase; Provisional | Back alignment and domain information |
|---|
Probab=96.42 E-value=0.035 Score=53.04 Aligned_cols=83 Identities=20% Similarity=0.200 Sum_probs=64.2
Q ss_pred HHHHHHHHhcC--CCEEEEeccCHHH----HHcCCcEEEEcCCCccCCCCCcchHHHHHHHHHHcCCCceEEEecCCCCH
Q 017781 215 KDVKWLQTITK--LPILVKGVLTAED----VQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRG 288 (366)
Q Consensus 215 ~~i~~lr~~~~--~pv~vK~v~~~~d----~~aGad~I~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~i~vi~~GGI~~~ 288 (366)
+.++.+|+..+ .+|.| .+-+.++ .++|+|.|-+.|. +.+.+.++.+.++++.++-++||| +.
T Consensus 182 ~ai~~~r~~~~~~~kIeV-Ev~tleea~ea~~~gaDiI~LDn~----------s~e~l~~av~~~~~~~~leaSGGI-~~ 249 (281)
T PRK06106 182 EAIRRARAGVGHLVKIEV-EVDTLDQLEEALELGVDAVLLDNM----------TPDTLREAVAIVAGRAITEASGRI-TP 249 (281)
T ss_pred HHHHHHHHhCCCCCcEEE-EeCCHHHHHHHHHcCCCEEEeCCC----------CHHHHHHHHHHhCCCceEEEECCC-CH
Confidence 45888888764 34333 4567776 9999999999883 346666776666667889999999 67
Q ss_pred HHHHHHHHhCcCEEEecHHHH
Q 017781 289 TDVFKALALGASGIFIGRPVV 309 (366)
Q Consensus 289 ~dv~kalalGAd~V~igr~~l 309 (366)
+.+.++-+.|+|.+.+|.+..
T Consensus 250 ~ni~~yA~tGVD~Is~Galth 270 (281)
T PRK06106 250 ETAPAIAASGVDLISVGWLTH 270 (281)
T ss_pred HHHHHHHhcCCCEEEeChhhc
Confidence 888888889999999998654
|
|
| >PRK08185 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=96.41 E-value=0.79 Score=43.94 Aligned_cols=100 Identities=20% Similarity=0.310 Sum_probs=68.3
Q ss_pred HHcCCcEEEEcC---CCccCCCCCc--chHHHHHHHHHHcCCCceEEEecCCCCH-HHHHHHHHhCcCEEEecHHHHHHh
Q 017781 239 VQAGAAGIIVSN---HGARQLDYVP--ATIMALEEVVKATQGRIPVFLDGGVRRG-TDVFKALALGASGIFIGRPVVYSL 312 (366)
Q Consensus 239 ~~aGad~I~vs~---~gg~~~~~~~--~~~~~l~~i~~~~~~~i~vi~~GGI~~~-~dv~kalalGAd~V~igr~~l~~l 312 (366)
.+.|+|.+.++. ||-.. ..+. -.++.|.++++.+ ++|+++=||+..+ +++.|++.+|..-|-+++-+..+.
T Consensus 159 ~~TgvD~LAvaiGt~HG~y~-~~~kp~L~~e~l~~I~~~~--~iPLVlHGgsg~~~e~~~~ai~~GI~KiNi~T~l~~a~ 235 (283)
T PRK08185 159 SRTGVDTLAVAIGTAHGIYP-KDKKPELQMDLLKEINERV--DIPLVLHGGSANPDAEIAESVQLGVGKINISSDMKYAF 235 (283)
T ss_pred HhhCCCEEEeccCcccCCcC-CCCCCCcCHHHHHHHHHhh--CCCEEEECCCCCCHHHHHHHHHCCCeEEEeChHHHHHH
Confidence 445999999864 33221 1112 2588999999888 7999999999666 456679999999999999765432
Q ss_pred hh-------cC------HHHHHHHHHHHHHHHHHHHHHcCCC
Q 017781 313 AA-------EG------EKGVRRVLEMLREEFELAMALSGCR 341 (366)
Q Consensus 313 ~~-------~G------~~gv~~~~~~l~~el~~~m~~~G~~ 341 (366)
.. .. ..-.....+.+.+..+..|+.+|..
T Consensus 236 ~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~i~~~gs~ 277 (283)
T PRK08185 236 FKKVREILSDNPSLYEPNQIYPSAIEAAKEVVRHKMDLFNST 277 (283)
T ss_pred HHHHHHHHHhCcCcCCHHHHHHHHHHHHHHHHHHHHHHhCCC
Confidence 10 01 1223344566777888888888864
|
|
| >PF03437 BtpA: BtpA family; InterPro: IPR005137 Photosystem I (PSI) is a large protein complex embedded within the photosynthetic thylakoid membrane | Back alignment and domain information |
|---|
Probab=96.37 E-value=0.073 Score=50.12 Aligned_cols=64 Identities=25% Similarity=0.394 Sum_probs=52.4
Q ss_pred HHcCCcEEEEcCCCccCCCCCcchHHHHHHHHHHcCCCceEEEecCCCCHHHHHHHHHhCcCEEEecHHHHH
Q 017781 239 VQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFIGRPVVY 310 (366)
Q Consensus 239 ~~aGad~I~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~i~vi~~GGI~~~~dv~kalalGAd~V~igr~~l~ 310 (366)
...++|+|+|++.. .+.+++.+.|.++++.+ .+||++.+|+ |.+.+.+.|.. ||++.+|+.|-.
T Consensus 169 ~~~~aDaviVtG~~----TG~~~~~~~l~~vr~~~--~~PVlvGSGv-t~~Ni~~~l~~-ADG~IVGS~~K~ 232 (254)
T PF03437_consen 169 ERGGADAVIVTGKA----TGEPPDPEKLKRVREAV--PVPVLVGSGV-TPENIAEYLSY-ADGAIVGSYFKK 232 (254)
T ss_pred HhcCCCEEEECCcc----cCCCCCHHHHHHHHhcC--CCCEEEecCC-CHHHHHHHHHh-CCEEEEeeeeee
Confidence 46789999999843 13467888999999888 4999999998 68889888865 999999998743
|
It consists of 11 subunits, ~100 chlorophyll a molecules, 2 phylloquinones, and 3 Fe4S4-clusters. The three dimensional structure of the PSI complex has been resolved at 2.5 A [], which allows the precise localisation of each cofactor. PSI together with photosystem II (PSII) catalyses the light-induced steps in oxygenic photosynthesis - a process found in cyanobacteria, eukaryotic algae (e.g. red algae, green algae) and higher plants. To date, three thylakoid proteins involved in the stable accumulation of PSI have been identified: BtpA [], Ycf3 [, ], and Ycf4 (IPR003359 from INTERPRO) []. Because translation of the psaA and psaB mRNAs encoding the two reaction centre polypeptides, of PSI and PSII respectively, is not affected in mutant strains lacking functional ycf3 and ycf4, the products of these two genes appear to act at a post-translational step of PSI biosynthesis. These gene products are therefore involved either in the stabilisation or in the assembly of the PSI complex. However, their exact roles remain unknown. The BtpA protein appears to act at the level of PSI stabilisation []. It is an extrinsic membrane protein located on the cytoplasmic side of the thylakoid membrane [, ]. Homologs of BtpA are found in the crenarchaeota and euryarchaeota, where their function remains unknown. The Ycf4 protein is firmly associated with the thylakoid membrane, presumably through a transmembrane domain []. Ycf4 co-fractionates with a protein complex larger than PSI upon sucrose density gradient centrifugation of solubilised thylakoids []. The Ycf3 protein is loosely associated with the thylakoid membrane and can be released from the membrane with sodium carbonate. This suggests that Ycf3 is not part of a stable complex and that it probably interacts transiently with its partners []. Ycf3 contains a number of tetratrico peptide repeats (TPR, IPR001440 from INTERPRO); TPR is a structural motif present in a wide range of proteins, which mediates protein-protein interactions. |
| >PRK06559 nicotinate-nucleotide pyrophosphorylase; Provisional | Back alignment and domain information |
|---|
Probab=96.37 E-value=0.036 Score=53.14 Aligned_cols=83 Identities=18% Similarity=0.190 Sum_probs=63.4
Q ss_pred HHHHHHHHhcC--CCEEEEeccCHHH----HHcCCcEEEEcCCCccCCCCCcchHHHHHHHHHHcCCCceEEEecCCCCH
Q 017781 215 KDVKWLQTITK--LPILVKGVLTAED----VQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRG 288 (366)
Q Consensus 215 ~~i~~lr~~~~--~pv~vK~v~~~~d----~~aGad~I~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~i~vi~~GGI~~~ 288 (366)
+.++.+|+..+ .+|.| .+-+.++ .++|+|.|.+.|. +.+.+.++.+.+++++.+.++||| +.
T Consensus 185 ~av~~~r~~~~~~~kIeV-Ev~tleea~~a~~agaDiImLDnm----------spe~l~~av~~~~~~~~leaSGGI-~~ 252 (290)
T PRK06559 185 KAIAQARAYAPFVKMVEV-EVESLAAAEEAAAAGADIIMLDNM----------SLEQIEQAITLIAGRSRIECSGNI-DM 252 (290)
T ss_pred HHHHHHHHhCCCCCeEEE-ECCCHHHHHHHHHcCCCEEEECCC----------CHHHHHHHHHHhcCceEEEEECCC-CH
Confidence 45888888764 33333 4567776 9999999999883 345566666666668899999999 68
Q ss_pred HHHHHHHHhCcCEEEecHHHH
Q 017781 289 TDVFKALALGASGIFIGRPVV 309 (366)
Q Consensus 289 ~dv~kalalGAd~V~igr~~l 309 (366)
+.+..+..+|+|.+.+|.+..
T Consensus 253 ~ni~~yA~tGVD~Is~galth 273 (290)
T PRK06559 253 TTISRFRGLAIDYVSSGSLTH 273 (290)
T ss_pred HHHHHHHhcCCCEEEeCcccc
Confidence 888888889999999998764
|
|
| >PRK13586 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Provisional | Back alignment and domain information |
|---|
Probab=96.36 E-value=0.014 Score=54.32 Aligned_cols=66 Identities=17% Similarity=0.063 Sum_probs=47.2
Q ss_pred HHcCCcEEEEcCC--CccCCCCCcchHHHHHHHHHHcCCCceEEEecCCCCHHHHHHHHHhCcCEEEecHHHHH
Q 017781 239 VQAGAAGIIVSNH--GARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFIGRPVVY 310 (366)
Q Consensus 239 ~~aGad~I~vs~~--gg~~~~~~~~~~~~l~~i~~~~~~~i~vi~~GGI~~~~dv~kalalGAd~V~igr~~l~ 310 (366)
.+.|+..|++.+- -|+. .| +.++.+..+.+. ..|+|++|||++-+|+.++..+|+++|.+|+++..
T Consensus 156 ~~~g~~~ii~tdI~~dGt~--~G-~d~el~~~~~~~---~~~viasGGv~s~~Dl~~l~~~G~~gvivg~Aly~ 223 (232)
T PRK13586 156 NELELLGIIFTYISNEGTT--KG-IDYNVKDYARLI---RGLKEYAGGVSSDADLEYLKNVGFDYIIVGMAFYL 223 (232)
T ss_pred HhcCCCEEEEecccccccC--cC-cCHHHHHHHHhC---CCCEEEECCCCCHHHHHHHHHCCCCEEEEehhhhc
Confidence 3456666665431 1221 23 466677776653 34599999999999999999999999999999764
|
|
| >cd00331 IGPS Indole-3-glycerol phosphate synthase (IGPS); an enzyme in the tryptophan biosynthetic pathway, catalyzing the ring closure reaction of 1-(o-carboxyphenylamino)-1-deoxyribulose-5-phosphate (CdRP) to indole-3-glycerol phosphate (IGP), accompanied by the release of carbon dioxide and water | Back alignment and domain information |
|---|
Probab=96.35 E-value=0.07 Score=48.77 Aligned_cols=84 Identities=25% Similarity=0.353 Sum_probs=55.0
Q ss_pred CHHHHHHHHHhcCCCEEEEec-cCHHH----HHcCCcEEEEcCCCccCCCCCcchHHHHHHHHHHcCCCceEEEecCCCC
Q 017781 213 SWKDVKWLQTITKLPILVKGV-LTAED----VQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRR 287 (366)
Q Consensus 213 ~~~~i~~lr~~~~~pv~vK~v-~~~~d----~~aGad~I~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~i~vi~~GGI~~ 287 (366)
..+.++.+|+..++||++|+. .+.+. .++|+|+|++.... ..+..+..+.+....+ .+.++++ +.+
T Consensus 60 ~~~~~~~i~~~v~iPi~~~~~i~~~~~v~~~~~~Gad~v~l~~~~-----~~~~~~~~~~~~~~~~--g~~~~v~--v~~ 130 (217)
T cd00331 60 SLEDLRAVREAVSLPVLRKDFIIDPYQIYEARAAGADAVLLIVAA-----LDDEQLKELYELAREL--GMEVLVE--VHD 130 (217)
T ss_pred CHHHHHHHHHhcCCCEEECCeecCHHHHHHHHHcCCCEEEEeecc-----CCHHHHHHHHHHHHHc--CCeEEEE--ECC
Confidence 456788888888999999974 34333 89999999985531 1112222222222223 3333322 468
Q ss_pred HHHHHHHHHhCcCEEEec
Q 017781 288 GTDVFKALALGASGIFIG 305 (366)
Q Consensus 288 ~~dv~kalalGAd~V~ig 305 (366)
.+++.++..+|++.++++
T Consensus 131 ~~e~~~~~~~g~~~i~~t 148 (217)
T cd00331 131 EEELERALALGAKIIGIN 148 (217)
T ss_pred HHHHHHHHHcCCCEEEEe
Confidence 999999999999999887
|
IGPS is active as a separate monomer in most organisms, but is also found fused to other enzymes as part of a bifunctional or multifunctional enzyme involved in tryptophan biosynthesis. |
| >TIGR01182 eda Entner-Doudoroff aldolase | Back alignment and domain information |
|---|
Probab=96.28 E-value=0.028 Score=51.20 Aligned_cols=77 Identities=26% Similarity=0.305 Sum_probs=55.4
Q ss_pred CHHHHHHHHHhcC-CCEEEEeccCHHH----HHcCCcEEEEcCCCccCCCCCcchHHHHHHHHHHcCCCceEEEecCCCC
Q 017781 213 SWKDVKWLQTITK-LPILVKGVLTAED----VQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRR 287 (366)
Q Consensus 213 ~~~~i~~lr~~~~-~pv~vK~v~~~~d----~~aGad~I~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~i~vi~~GGI~~ 287 (366)
..+.|+++++.++ +.|....+++.++ .++|+++|+ |-+. ..+.+..+. .. .+|++- |+.|
T Consensus 46 a~~~i~~l~~~~~~~~vGAGTVl~~~~a~~a~~aGA~Fiv-sP~~---------~~~v~~~~~-~~--~i~~iP--G~~T 110 (204)
T TIGR01182 46 ALDAIRLLRKEVPDALIGAGTVLNPEQLRQAVDAGAQFIV-SPGL---------TPELAKHAQ-DH--GIPIIP--GVAT 110 (204)
T ss_pred HHHHHHHHHHHCCCCEEEEEeCCCHHHHHHHHHcCCCEEE-CCCC---------CHHHHHHHH-Hc--CCcEEC--CCCC
Confidence 3466999998774 5566667888887 999999995 3321 223343333 22 566666 8999
Q ss_pred HHHHHHHHHhCcCEEEe
Q 017781 288 GTDVFKALALGASGIFI 304 (366)
Q Consensus 288 ~~dv~kalalGAd~V~i 304 (366)
+.++.+|+.+|||.|=+
T Consensus 111 ptEi~~A~~~Ga~~vKl 127 (204)
T TIGR01182 111 PSEIMLALELGITALKL 127 (204)
T ss_pred HHHHHHHHHCCCCEEEE
Confidence 99999999999999743
|
2-deydro-3-deoxyphosphogluconate aldolase (EC 4.1.2.14) is an enzyme of the Entner-Doudoroff pathway. This aldolase has another function, 4-hydroxy-2-oxoglutarate aldolase (EC 4.1.3.16) shown experimentally in Escherichia coli and Pseudomonas putida |
| >cd00947 TBP_aldolase_IIB Tagatose-1,6-bisphosphate (TBP) aldolase and related Type B Class II aldolases | Back alignment and domain information |
|---|
Probab=96.28 E-value=0.67 Score=44.26 Aligned_cols=100 Identities=25% Similarity=0.353 Sum_probs=68.5
Q ss_pred HHcCCcEEEEcC---CCccCCCCCcchHHHHHHHHHHcCCCceEEEecCCCCHH-HHHHHHHhCcCEEEecHHHHHHhhh
Q 017781 239 VQAGAAGIIVSN---HGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGT-DVFKALALGASGIFIGRPVVYSLAA 314 (366)
Q Consensus 239 ~~aGad~I~vs~---~gg~~~~~~~~~~~~l~~i~~~~~~~i~vi~~GGI~~~~-dv~kalalGAd~V~igr~~l~~l~~ 314 (366)
.+.|+|.+-++. ||.+......-.++.|.++.+.+ ++|+..=||=..+. ++.|++..|..-|-+++-+..+...
T Consensus 158 ~~TgvD~LAvsiGt~HG~Y~~~~p~L~~~~L~~i~~~~--~vPLVlHGgSG~~~e~~~~ai~~Gi~KiNi~T~l~~a~~~ 235 (276)
T cd00947 158 EETGVDALAVAIGTSHGAYKGGEPKLDFDRLKEIAERV--NVPLVLHGGSGIPDEQIRKAIKLGVCKININTDLRLAFTA 235 (276)
T ss_pred HHHCCCEEEeccCccccccCCCCCccCHHHHHHHHHHh--CCCEEEeCCCCCCHHHHHHHHHcCCeEEEeChHHHHHHHH
Confidence 567899999874 44322101123678999999998 79999999877774 5888999999999999987554211
Q ss_pred -------cC------HHHHHHHHHHHHHHHHHHHHHcCC
Q 017781 315 -------EG------EKGVRRVLEMLREEFELAMALSGC 340 (366)
Q Consensus 315 -------~G------~~gv~~~~~~l~~el~~~m~~~G~ 340 (366)
.. ..-.....+.+.+.++..|..+|.
T Consensus 236 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~s 274 (276)
T cd00947 236 ALREYLAENPKEFDPRKYLAPAIEAVKEVVKHKMELFGS 274 (276)
T ss_pred HHHHHHHhCCCcCCHHHHHHHHHHHHHHHHHHHHHHhCC
Confidence 00 012334445667777777777765
|
TBP aldolase is a tetrameric class II aldolase that catalyzes the reversible condensation of dihydroxyacetone phosphate with glyceraldehyde 3-phsophate to produce tagatose 1,6-bisphosphate. There is an absolute requirement for a divalent metal ion, usually zinc, and in addition the enzymes are activated by monovalent cations such as Na+. The type A and type B Class II FBPA's differ in the presence and absence of distinct indels in the sequence that result in differing loop lengths in the structures. |
| >TIGR03569 NeuB_NnaB N-acetylneuraminate synthase | Back alignment and domain information |
|---|
Probab=96.27 E-value=0.27 Score=48.15 Aligned_cols=230 Identities=16% Similarity=0.133 Sum_probs=119.0
Q ss_pred ceEecccccccccCChhhHHHHHHHHHcCCceecCCCCCCCHHHHhcc-CCC-ce-----E-----EEeee--cCCHHHH
Q 017781 73 PIMIAPTAMQKMAHPEGEYATARAASAAGTIMTLSSWSTSSVEEVAST-GPG-IR-----F-----FQLYV--YKDRNVV 138 (366)
Q Consensus 73 Pi~iApm~~~~l~~~~~e~~la~aa~~~G~~~~vs~~~~~~~e~i~~~-~~~-~~-----~-----~Qly~--~~d~~~~ 138 (366)
|++||=+|...-..-+--..+.++|++.|+-.+= =+ ....+++... .+. .+ | +.+|. .-+.+..
T Consensus 1 ~~iIAEig~NH~Gdl~~A~~lI~~A~~aGadaVK-fQ-t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~e~~ 78 (329)
T TIGR03569 1 TFIIAEAGVNHNGSLELAKKLVDAAAEAGADAVK-FQ-TFKAEDLVSKNAPKAEYQKINTGAEESQLEMLKKLELSEEDH 78 (329)
T ss_pred CEEEEEeCCCccCcHHHHHHHHHHHHHhCCCEEE-ee-eCCHHHhhCcccccccccccCCcCCCcHHHHHHHhCCCHHHH
Confidence 6788888653211111224788899999976541 12 2334444221 111 11 1 11110 1245667
Q ss_pred HHHHHHHHHcCCCEEEEecCCCCCcchhHHHhhhcCCCCccccccccccccCCCccccchhhHHHhhhccCCC-CCHHHH
Q 017781 139 AQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLTLKNFQGLDLGKMDEANDSGLAAYVAGQIDRS-LSWKDV 217 (366)
Q Consensus 139 ~~~l~ra~~~G~~ai~vtvd~p~~g~r~~d~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~-~~~~~i 217 (366)
..+.+.+++.|...+.--.| .+.-|+...+.+|. +. + ...+ ..+..+
T Consensus 79 ~~L~~~~~~~Gi~~~stpfd-----~~svd~l~~~~v~~-~K-----------I---------------aS~~~~n~pLL 126 (329)
T TIGR03569 79 RELKEYCESKGIEFLSTPFD-----LESADFLEDLGVPR-FK-----------I---------------PSGEITNAPLL 126 (329)
T ss_pred HHHHHHHHHhCCcEEEEeCC-----HHHHHHHHhcCCCE-EE-----------E---------------CcccccCHHHH
Confidence 77788888888777642222 12223333332221 00 0 0112 246677
Q ss_pred HHHHHhcCCCEEEEec-cCHHH--------HHcCCc---EEEEcCCCccCCCCCcchHHHHHHHHHHcCCCceEEEecCC
Q 017781 218 KWLQTITKLPILVKGV-LTAED--------VQAGAA---GIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGV 285 (366)
Q Consensus 218 ~~lr~~~~~pv~vK~v-~~~~d--------~~aGad---~I~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~i~vi~~GGI 285 (366)
+.+.+ +++||+++.. .+.++ .+.|.+ .+.++....+........+..++.+++.. .+||..++=-
T Consensus 127 ~~~A~-~gkPvilStGmatl~Ei~~Av~~i~~~G~~~~~i~llhC~s~YP~~~~~~nL~~I~~Lk~~f--~~pVG~SdHt 203 (329)
T TIGR03569 127 KKIAR-FGKPVILSTGMATLEEIEAAVGVLRDAGTPDSNITLLHCTTEYPAPFEDVNLNAMDTLKEAF--DLPVGYSDHT 203 (329)
T ss_pred HHHHh-cCCcEEEECCCCCHHHHHHHHHHHHHcCCCcCcEEEEEECCCCCCCcccCCHHHHHHHHHHh--CCCEEECCCC
Confidence 77776 5899999955 56665 667764 44443322111111123456677777666 5899887533
Q ss_pred CCHHHHHHHHHhCcCEEEecHHHHHHhhhcCHHHH----HHHHHHHHHHHHHHHHHcCCC
Q 017781 286 RRGTDVFKALALGASGIFIGRPVVYSLAAEGEKGV----RRVLEMLREEFELAMALSGCR 341 (366)
Q Consensus 286 ~~~~dv~kalalGAd~V~igr~~l~~l~~~G~~gv----~~~~~~l~~el~~~m~~~G~~ 341 (366)
..-.-...|+++||+ +|=+-|--.-+..|++.- -.-+..|.++++..-..+|..
T Consensus 204 ~G~~~~~aAvalGA~--iIEkH~tldk~~~G~D~~~Sl~p~el~~lv~~ir~~~~~lG~~ 261 (329)
T TIGR03569 204 LGIEAPIAAVALGAT--VIEKHFTLDKNLPGPDHKASLEPDELKEMVQGIRNVEKALGDG 261 (329)
T ss_pred ccHHHHHHHHHcCCC--EEEeCCChhhcCCCCChhhcCCHHHHHHHHHHHHHHHHHcCCC
Confidence 323344567889999 556655433333343221 123456666677777777753
|
This family is a subset of the Pfam model pfam03102 and is believed to include only authentic NeuB N-acetylneuraminate (sialic acid) synthase enzymes. The majority of the genes identified by this model are observed adjacent to both the NeuA and NeuC genes which together effect the biosynthesis of CMP-N-acetylneuraminate from UDP-N-acetylglucosamine. |
| >PRK09016 quinolinate phosphoribosyltransferase; Validated | Back alignment and domain information |
|---|
Probab=96.24 E-value=0.037 Score=53.18 Aligned_cols=83 Identities=24% Similarity=0.261 Sum_probs=62.9
Q ss_pred HHHHHHHHhcC-CCEEEEeccCHHH----HHcCCcEEEEcCCCccCCCCCcchHHHHHHHHHHcCCCceEEEecCCCCHH
Q 017781 215 KDVKWLQTITK-LPILVKGVLTAED----VQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGT 289 (366)
Q Consensus 215 ~~i~~lr~~~~-~pv~vK~v~~~~d----~~aGad~I~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~i~vi~~GGI~~~~ 289 (366)
+.++.+|+... .| +.-.+-+.++ .++|+|.|-+.|. +.+.+.++.+.+++++.+.++||| +.+
T Consensus 197 ~av~~~r~~~~~~k-IeVEv~sleea~ea~~~gaDiI~LDn~----------s~e~~~~av~~~~~~~~ieaSGGI-~~~ 264 (296)
T PRK09016 197 QAVEKAFWLHPDVP-VEVEVENLDELDQALKAGADIIMLDNF----------TTEQMREAVKRTNGRALLEVSGNV-TLE 264 (296)
T ss_pred HHHHHHHHhCCCCC-EEEEeCCHHHHHHHHHcCCCEEEeCCC----------ChHHHHHHHHhhcCCeEEEEECCC-CHH
Confidence 45778887653 45 3335567776 9999999998883 235666666666668899999999 678
Q ss_pred HHHHHHHhCcCEEEecHHHH
Q 017781 290 DVFKALALGASGIFIGRPVV 309 (366)
Q Consensus 290 dv~kalalGAd~V~igr~~l 309 (366)
.+.++-.+|+|.+.+|.+.-
T Consensus 265 ni~~yA~tGVD~Is~galth 284 (296)
T PRK09016 265 TLREFAETGVDFISVGALTK 284 (296)
T ss_pred HHHHHHhcCCCEEEeCcccc
Confidence 88888889999999998653
|
|
| >PRK12738 kbaY tagatose-bisphosphate aldolase; Reviewed | Back alignment and domain information |
|---|
Probab=96.23 E-value=0.75 Score=44.15 Aligned_cols=100 Identities=17% Similarity=0.274 Sum_probs=67.6
Q ss_pred HHcCCcEEEEcC---CCccCCCCCcchHHHHHHHHHHcCCCceEEEecCCCC-HHHHHHHHHhCcCEEEecHHHHHHhhh
Q 017781 239 VQAGAAGIIVSN---HGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRR-GTDVFKALALGASGIFIGRPVVYSLAA 314 (366)
Q Consensus 239 ~~aGad~I~vs~---~gg~~~~~~~~~~~~l~~i~~~~~~~i~vi~~GGI~~-~~dv~kalalGAd~V~igr~~l~~l~~ 314 (366)
.+.|+|.+-++. ||-+. ....-.++.|.+|++.+ ++|+..=||=.. .+++.||+.+|..-|-+++-+..+...
T Consensus 165 ~~TgvD~LAvaiGt~HG~Y~-~~p~Ldfd~l~~I~~~~--~vPLVLHGgSG~~~e~~~kai~~GI~KiNi~T~l~~a~~~ 241 (286)
T PRK12738 165 ELTGVDSLAVAIGTAHGLYS-KTPKIDFQRLAEIREVV--DVPLVLHGASDVPDEFVRRTIELGVTKVNVATELKIAFAG 241 (286)
T ss_pred HHhCCCEEEeccCcccCCCC-CCCcCCHHHHHHHHHHh--CCCEEEeCCCCCCHHHHHHHHHcCCeEEEeCcHHHHHHHH
Confidence 567899999874 45332 11223678999999988 799888775444 466778999999999999977554211
Q ss_pred -------cCH------HHHHHHHHHHHHHHHHHHHHcCCC
Q 017781 315 -------EGE------KGVRRVLEMLREEFELAMALSGCR 341 (366)
Q Consensus 315 -------~G~------~gv~~~~~~l~~el~~~m~~~G~~ 341 (366)
..+ .-.....+.+++-.+..|+.+|..
T Consensus 242 ~~~~~~~~~~~~~d~~~~~~~~~~~~~~~v~~~i~~~gs~ 281 (286)
T PRK12738 242 AVKAWFAENPQGNDPRYYMRVGMDAMKEVVRNKINVCGSA 281 (286)
T ss_pred HHHHHHHhCCCcCCHHHHHHHHHHHHHHHHHHHHHHhCCC
Confidence 011 123344556777777888888754
|
|
| >cd00381 IMPDH IMPDH: The catalytic domain of the inosine monophosphate dehydrogenase | Back alignment and domain information |
|---|
Probab=96.20 E-value=0.039 Score=53.93 Aligned_cols=61 Identities=21% Similarity=0.319 Sum_probs=48.2
Q ss_pred HHcCCcEEEEcCCCccCCCCCcchHHHHHHHHHHcCCCceEEEecCCCCHHHHHHHHHhCcCEEEec
Q 017781 239 VQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFIG 305 (366)
Q Consensus 239 ~~aGad~I~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~i~vi~~GGI~~~~dv~kalalGAd~V~ig 305 (366)
.++|+|.|+++.+.|.. ....+.+.++++..+ +++|++ |.+.+.+++.+++.+|||+|.+|
T Consensus 103 ~eagv~~I~vd~~~G~~----~~~~~~i~~ik~~~p-~v~Vi~-G~v~t~~~A~~l~~aGaD~I~vg 163 (325)
T cd00381 103 VEAGVDVIVIDSAHGHS----VYVIEMIKFIKKKYP-NVDVIA-GNVVTAEAARDLIDAGADGVKVG 163 (325)
T ss_pred HhcCCCEEEEECCCCCc----HHHHHHHHHHHHHCC-CceEEE-CCCCCHHHHHHHHhcCCCEEEEC
Confidence 88999999987644321 234567777777653 588888 99999999999999999999874
|
IMPDH catalyzes the NAD-dependent oxidation of inosine 5'-monophosphate (IMP) to xanthosine 5' monophosphate (XMP). It is a rate-limiting step in the de novo synthesis of the guanine nucleotides. There is often a CBS domain inserted in the middle of this domain, which is proposed to play a regulatory role. IMPDH is a key enzyme in the regulation of cell proliferation and differentiation. It has been identified as an attractive target for developing chemotherapeutic agents. |
| >PRK13813 orotidine 5'-phosphate decarboxylase; Provisional | Back alignment and domain information |
|---|
Probab=96.20 E-value=0.018 Score=52.67 Aligned_cols=48 Identities=19% Similarity=0.351 Sum_probs=33.7
Q ss_pred EEEecCCCCHH-HHHHHHHhCcCEEEecHHHHHHhhhcCHHHHHHHHHHHHHHHH
Q 017781 279 VFLDGGVRRGT-DVFKALALGASGIFIGRPVVYSLAAEGEKGVRRVLEMLREEFE 332 (366)
Q Consensus 279 vi~~GGI~~~~-dv~kalalGAd~V~igr~~l~~l~~~G~~gv~~~~~~l~~el~ 332 (366)
.+++|||+... ++.+++..|||.+.+||+++.+ ++ ..+.++.++++++
T Consensus 165 ~ivdgGI~~~g~~~~~~~~aGad~iV~Gr~I~~~-----~d-~~~~~~~l~~~~~ 213 (215)
T PRK13813 165 KIISPGIGAQGGKAADAIKAGADYVIVGRSIYNA-----AD-PREAAKAINEEIR 213 (215)
T ss_pred EEEeCCcCCCCCCHHHHHHcCCCEEEECcccCCC-----CC-HHHHHHHHHHHHh
Confidence 34999999863 6778888999999999986432 11 3445566665554
|
|
| >PRK09195 gatY tagatose-bisphosphate aldolase; Reviewed | Back alignment and domain information |
|---|
Probab=96.16 E-value=0.76 Score=44.08 Aligned_cols=100 Identities=17% Similarity=0.293 Sum_probs=66.9
Q ss_pred HHcCCcEEEEcC---CCccCCCCCcchHHHHHHHHHHcCCCceEEEecCCCC-HHHHHHHHHhCcCEEEecHHHHHHhh-
Q 017781 239 VQAGAAGIIVSN---HGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRR-GTDVFKALALGASGIFIGRPVVYSLA- 313 (366)
Q Consensus 239 ~~aGad~I~vs~---~gg~~~~~~~~~~~~l~~i~~~~~~~i~vi~~GGI~~-~~dv~kalalGAd~V~igr~~l~~l~- 313 (366)
.+.|+|.+-|+. ||-+. ....-.++.|.+|++.+ ++|+..=||=.. -+++.||+.+|..-|-+++-+..+..
T Consensus 165 ~~TgvD~LAvaiGt~HG~y~-~~p~Ld~~~L~~I~~~~--~vPLVLHGgSG~~~e~~~~ai~~Gi~KiNi~T~l~~a~~~ 241 (284)
T PRK09195 165 EATGIDSLAVAIGTAHGMYK-GEPKLDFDRLENIRQWV--NIPLVLHGASGLPTKDIQQTIKLGICKVNVATELKIAFSQ 241 (284)
T ss_pred HHHCcCEEeeccCccccccC-CCCcCCHHHHHHHHHHh--CCCeEEecCCCCCHHHHHHHHHcCCeEEEeCcHHHHHHHH
Confidence 567999999875 55322 11123678899999988 789888775444 46677899999999999997754321
Q ss_pred ------hcC------HHHHHHHHHHHHHHHHHHHHHcCCC
Q 017781 314 ------AEG------EKGVRRVLEMLREEFELAMALSGCR 341 (366)
Q Consensus 314 ------~~G------~~gv~~~~~~l~~el~~~m~~~G~~ 341 (366)
... ..-.....+.+++-.+..|+.+|..
T Consensus 242 ~~~~~~~~~~~~~d~~~~~~~~~~~~~~~v~~~i~~~gs~ 281 (284)
T PRK09195 242 ALKNYLTEHPEANDPRHYLQPAKSAMKDVVSKVIADCGCE 281 (284)
T ss_pred HHHHHHHhCcCcCCHHHHHHHHHHHHHHHHHHHHHHhCCC
Confidence 001 0113344556777777788887753
|
|
| >PRK05718 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional | Back alignment and domain information |
|---|
Probab=96.12 E-value=0.17 Score=46.40 Aligned_cols=87 Identities=16% Similarity=0.101 Sum_probs=55.5
Q ss_pred CHHHHHHHHHhcCCCEEEEeccCHHH----HHcCCcEEEEcCCCccCCCCCcchHHHHHHHHHHcCCCceEEEecCCCCH
Q 017781 213 SWKDVKWLQTITKLPILVKGVLTAED----VQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRG 288 (366)
Q Consensus 213 ~~~~i~~lr~~~~~pv~vK~v~~~~d----~~aGad~I~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~i~vi~~GGI~~~ 288 (366)
+-+.+++.++ .++|+ +=|+.|+.+ .++|+|.|.+.-.+ .. +|+ ..++.++.-++ +++++..|||. .
T Consensus 97 ~~~vi~~a~~-~~i~~-iPG~~TptEi~~a~~~Ga~~vKlFPa~--~~-gg~---~~lk~l~~p~p-~~~~~ptGGV~-~ 166 (212)
T PRK05718 97 TPPLLKAAQE-GPIPL-IPGVSTPSELMLGMELGLRTFKFFPAE--AS-GGV---KMLKALAGPFP-DVRFCPTGGIS-P 166 (212)
T ss_pred CHHHHHHHHH-cCCCE-eCCCCCHHHHHHHHHCCCCEEEEccch--hc-cCH---HHHHHHhccCC-CCeEEEeCCCC-H
Confidence 3345555554 46653 346778776 89999999984321 11 133 33444444443 69999999995 5
Q ss_pred HHHHHHHHhCcCEEEecHHHHH
Q 017781 289 TDVFKALALGASGIFIGRPVVY 310 (366)
Q Consensus 289 ~dv~kalalGAd~V~igr~~l~ 310 (366)
+++...+.+|+..++.| .+|+
T Consensus 167 ~ni~~~l~ag~v~~vgg-s~L~ 187 (212)
T PRK05718 167 ANYRDYLALPNVLCIGG-SWMV 187 (212)
T ss_pred HHHHHHHhCCCEEEEEC-hHhC
Confidence 89999999996555554 4443
|
|
| >PF00834 Ribul_P_3_epim: Ribulose-phosphate 3 epimerase family; InterPro: IPR000056 Ribulose-phosphate 3-epimerase (5 | Back alignment and domain information |
|---|
Probab=96.11 E-value=0.097 Score=47.63 Aligned_cols=48 Identities=17% Similarity=0.302 Sum_probs=33.2
Q ss_pred chHHHHHHHHHHc---CCCceEEEecCCCCHHHHHHHHHhCcCEEEecHHHH
Q 017781 261 ATIMALEEVVKAT---QGRIPVFLDGGVRRGTDVFKALALGASGIFIGRPVV 309 (366)
Q Consensus 261 ~~~~~l~~i~~~~---~~~i~vi~~GGI~~~~dv~kalalGAd~V~igr~~l 309 (366)
..++-+.++++.. +.++.|.+||||+.. .+.+..++|||.+.+|+.+.
T Consensus 148 ~~~~KI~~l~~~~~~~~~~~~I~vDGGI~~~-~~~~~~~aGad~~V~Gs~iF 198 (201)
T PF00834_consen 148 EVLEKIRELRKLIPENGLDFEIEVDGGINEE-NIKQLVEAGADIFVAGSAIF 198 (201)
T ss_dssp GHHHHHHHHHHHHHHHTCGSEEEEESSESTT-THHHHHHHT--EEEESHHHH
T ss_pred HHHHHHHHHHHHHHhcCCceEEEEECCCCHH-HHHHHHHcCCCEEEECHHHh
Confidence 3555555555443 336899999999754 67778889999999998753
|
1.3.1 from EC) (also known as pentose-5-phosphate 3-epimerase or PPE) is the enzyme that converts D-ribulose 5-phosphate into D-xylulose 5-phosphate in Calvin's reductive pentose phosphate cycle. In Ralstonia eutropha (Alcaligenes eutrophus) two copies of the gene coding for PPE are known [], one is chromosomally encoded P40117 from SWISSPROT, the other one is on a plasmid Q04539 from SWISSPROT. PPE has been found in a wide range of bacteria, archaebacteria, fungi and plants. All the proteins have from 209 to 241 amino acid residues. The enzyme has a TIM barrel structure.; GO: 0004750 ribulose-phosphate 3-epimerase activity, 0005975 carbohydrate metabolic process; PDB: 3CTL_A 3CT7_D 3CU2_A 1RPX_A 3OVR_A 3OVP_A 3OVQ_B 3QC3_B 3INP_A 1TQJ_D .... |
| >PRK06543 nicotinate-nucleotide pyrophosphorylase; Provisional | Back alignment and domain information |
|---|
Probab=96.09 E-value=0.056 Score=51.61 Aligned_cols=83 Identities=20% Similarity=0.209 Sum_probs=63.0
Q ss_pred HHHHHHHHhcC--CCEEEEeccCHHH----HHcCCcEEEEcCCCccCCCCCcchHHHHHHHHHHcCCCceEEEecCCCCH
Q 017781 215 KDVKWLQTITK--LPILVKGVLTAED----VQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRG 288 (366)
Q Consensus 215 ~~i~~lr~~~~--~pv~vK~v~~~~d----~~aGad~I~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~i~vi~~GGI~~~ 288 (366)
+.++.+|+..+ .+ |.=.+-+.++ .++|+|.|.+.|. +.+.+.++.+.++++..+.++||| +.
T Consensus 181 ~av~~~r~~~~~~~k-IeVEv~slee~~ea~~~gaDiImLDn~----------s~e~l~~av~~~~~~~~leaSGgI-~~ 248 (281)
T PRK06543 181 EALRHVRAQLGHTTH-VEVEVDRLDQIEPVLAAGVDTIMLDNF----------SLDDLREGVELVDGRAIVEASGNV-NL 248 (281)
T ss_pred HHHHHHHHhCCCCCc-EEEEeCCHHHHHHHHhcCCCEEEECCC----------CHHHHHHHHHHhCCCeEEEEECCC-CH
Confidence 45888888764 33 3334567776 8899999999883 345556666666667789999999 68
Q ss_pred HHHHHHHHhCcCEEEecHHHH
Q 017781 289 TDVFKALALGASGIFIGRPVV 309 (366)
Q Consensus 289 ~dv~kalalGAd~V~igr~~l 309 (366)
+.+.++...|+|.+.+|.+..
T Consensus 249 ~ni~~yA~tGVD~Is~galth 269 (281)
T PRK06543 249 NTVGAIASTGVDVISVGALTH 269 (281)
T ss_pred HHHHHHHhcCCCEEEeCcccc
Confidence 889888889999999998653
|
|
| >PRK07896 nicotinate-nucleotide pyrophosphorylase; Provisional | Back alignment and domain information |
|---|
Probab=96.09 E-value=0.061 Score=51.61 Aligned_cols=83 Identities=16% Similarity=0.188 Sum_probs=60.3
Q ss_pred HHHHHHHHhcC-CCEEEEeccCHHH----HHcCCcEEEEcCCCccCCCCCcchHHHHHHHHHH---cCCCceEEEecCCC
Q 017781 215 KDVKWLQTITK-LPILVKGVLTAED----VQAGAAGIIVSNHGARQLDYVPATIMALEEVVKA---TQGRIPVFLDGGVR 286 (366)
Q Consensus 215 ~~i~~lr~~~~-~pv~vK~v~~~~d----~~aGad~I~vs~~gg~~~~~~~~~~~~l~~i~~~---~~~~i~vi~~GGI~ 286 (366)
+.++++|+..+ .| +.=.+-+.++ .++|+|.|-+.|. . .+.+.++.+. ...++.+.++|||
T Consensus 188 ~ai~~~r~~~~~~k-IeVEv~tl~ea~eal~~gaDiI~LDnm-------~---~e~vk~av~~~~~~~~~v~ieaSGGI- 255 (289)
T PRK07896 188 AALRAVRAAAPDLP-CEVEVDSLEQLDEVLAEGAELVLLDNF-------P---VWQTQEAVQRRDARAPTVLLESSGGL- 255 (289)
T ss_pred HHHHHHHHhCCCCC-EEEEcCCHHHHHHHHHcCCCEEEeCCC-------C---HHHHHHHHHHHhccCCCEEEEEECCC-
Confidence 45888888653 45 3334567766 8999999999873 2 2333333332 3457899999999
Q ss_pred CHHHHHHHHHhCcCEEEecHHHH
Q 017781 287 RGTDVFKALALGASGIFIGRPVV 309 (366)
Q Consensus 287 ~~~dv~kalalGAd~V~igr~~l 309 (366)
+.+.+.++-.+|+|.+.+|.+..
T Consensus 256 ~~~ni~~yA~tGvD~Is~galt~ 278 (289)
T PRK07896 256 TLDTAAAYAETGVDYLAVGALTH 278 (289)
T ss_pred CHHHHHHHHhcCCCEEEeChhhc
Confidence 68888888889999999998764
|
|
| >PRK11750 gltB glutamate synthase subunit alpha; Provisional | Back alignment and domain information |
|---|
Probab=96.06 E-value=0.046 Score=62.23 Aligned_cols=114 Identities=12% Similarity=0.148 Sum_probs=84.1
Q ss_pred HHcCCcEEEEcCCCccCCCCCcchHHHHHHHHHHc-----CCCceEEE-ecCCCCHHHHHHHHHhCcCEEEecHHHH--H
Q 017781 239 VQAGAAGIIVSNHGARQLDYVPATIMALEEVVKAT-----QGRIPVFL-DGGVRRGTDVFKALALGASGIFIGRPVV--Y 310 (366)
Q Consensus 239 ~~aGad~I~vs~~gg~~~~~~~~~~~~l~~i~~~~-----~~~i~vi~-~GGI~~~~dv~kalalGAd~V~igr~~l--~ 310 (366)
.+.|+..|++|-++-..-....|.+-++..+...+ +.++.||+ +|.+|+.-|++..+.+|||+|.-.-++- .
T Consensus 607 v~~G~~ilILSDr~~~~~~~~IP~LLAv~aVH~hLir~glR~~vsLIveSGe~RevHhfA~LiGyGA~AV~PYLA~eti~ 686 (1485)
T PRK11750 607 VRDGTVLLVLSDRNIAKGRLPIPAAMAVGAVQHRLVDKGLRCDANIIVETASARDPHHFAVLLGFGATAVYPYLAYETLG 686 (1485)
T ss_pred HHCCCeEEEEcCCCCCCCcCCcCHHHHHHHHHHHHHHcCCcceeeEEEecCCcCCHHHHHHHHhcChhhhhhHHHHHHHH
Confidence 78899999999875322223445555555555443 44788888 8999999999999999999995544331 1
Q ss_pred HhhhcC------HHHHHHHHHHHHHHHHHHHHHcCCCChhhhccccee
Q 017781 311 SLAAEG------EKGVRRVLEMLREEFELAMALSGCRSLKEITRDHIV 352 (366)
Q Consensus 311 ~l~~~G------~~gv~~~~~~l~~el~~~m~~~G~~~l~el~~~~l~ 352 (366)
.+...| .+.+.+++..+.++|...|..+|.++++.-++..+.
T Consensus 687 ~l~~~g~l~~~~~~a~~ny~~A~~kGLlKImsKMGIStl~SY~gaqiF 734 (1485)
T PRK11750 687 DLVDTGEILKDYRQVMLNYRKGINKGLYKIMSKMGISTIASYRGSQLF 734 (1485)
T ss_pred HHHhcCCCCCCHHHHHHHHHHHHHHHHHHHHhhcchhhHHhcCCcccc
Confidence 121223 367889999999999999999999999988776553
|
|
| >PLN02446 (5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase | Back alignment and domain information |
|---|
Probab=95.98 E-value=0.028 Score=53.08 Aligned_cols=64 Identities=25% Similarity=0.219 Sum_probs=50.9
Q ss_pred HHcCCcEEEEcCCCccCCCCCcchHHHHHHHHHHcCCCceEEEecCCCCHHHHHHHHHhCcCEEEecHHHHH
Q 017781 239 VQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFIGRPVVY 310 (366)
Q Consensus 239 ~~aGad~I~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~i~vi~~GGI~~~~dv~kalalGAd~V~igr~~l~ 310 (366)
.+.|++.+.|--=+| +.+...+++.++++ + .+||-+-||||+ +++.++|.+||+-|.||+..+.
T Consensus 53 ~~~Ga~~lHvVDLdg----g~~~n~~~i~~i~~-~--~~~vqvGGGIR~-e~i~~~l~~Ga~rViigT~Av~ 116 (262)
T PLN02446 53 KRDGLTGGHVIMLGA----DDASLAAALEALRA-Y--PGGLQVGGGVNS-ENAMSYLDAGASHVIVTSYVFR 116 (262)
T ss_pred HHCCCCEEEEEECCC----CCcccHHHHHHHHh-C--CCCEEEeCCccH-HHHHHHHHcCCCEEEEchHHHh
Confidence 678888887543222 23445788888888 6 599999999997 9999999999999999987654
|
|
| >PRK13398 3-deoxy-7-phosphoheptulonate synthase; Provisional | Back alignment and domain information |
|---|
Probab=95.94 E-value=0.73 Score=43.78 Aligned_cols=93 Identities=23% Similarity=0.330 Sum_probs=59.3
Q ss_pred HHHHHHHHHhcCCCEEEEec-c-CHHH--------HHcCCcEEEEcCCCccCCCCC-cc--hHHHHHHHHHHcCCCceEE
Q 017781 214 WKDVKWLQTITKLPILVKGV-L-TAED--------VQAGAAGIIVSNHGARQLDYV-PA--TIMALEEVVKATQGRIPVF 280 (366)
Q Consensus 214 ~~~i~~lr~~~~~pv~vK~v-~-~~~d--------~~aGad~I~vs~~gg~~~~~~-~~--~~~~l~~i~~~~~~~i~vi 280 (366)
.+.++.+ ..+++||++|.. . +.++ ...|-.-+++--.|++....- +. .+..++.+++.. .+||+
T Consensus 124 ~~LL~~~-a~~gkPV~lk~G~~~s~~e~~~A~e~i~~~Gn~~i~L~~rG~~t~~~Y~~~~vdl~~i~~lk~~~--~~pV~ 200 (266)
T PRK13398 124 FELLKEV-GKTKKPILLKRGMSATLEEWLYAAEYIMSEGNENVVLCERGIRTFETYTRNTLDLAAVAVIKELS--HLPII 200 (266)
T ss_pred HHHHHHH-hcCCCcEEEeCCCCCCHHHHHHHHHHHHhcCCCeEEEEECCCCCCCCCCHHHHHHHHHHHHHhcc--CCCEE
Confidence 4456666 456899999965 3 6665 556776565544455333211 11 344566555544 68999
Q ss_pred EecCCCC------HHHHHHHHHhCcCEEEecHHHH
Q 017781 281 LDGGVRR------GTDVFKALALGASGIFIGRPVV 309 (366)
Q Consensus 281 ~~GGI~~------~~dv~kalalGAd~V~igr~~l 309 (366)
+|..=.. ......|+++|||+++|-+-+-
T Consensus 201 ~D~sHs~G~~~~v~~~~~aAva~Ga~Gl~iE~H~~ 235 (266)
T PRK13398 201 VDPSHATGRRELVIPMAKAAIAAGADGLMIEVHPE 235 (266)
T ss_pred EeCCCcccchhhHHHHHHHHHHcCCCEEEEeccCC
Confidence 9643222 5677788999999999997653
|
|
| >TIGR02134 transald_staph transaldolase | Back alignment and domain information |
|---|
Probab=95.93 E-value=1.4 Score=41.01 Aligned_cols=96 Identities=15% Similarity=0.126 Sum_probs=71.2
Q ss_pred HHHHHHHHHhcCCCEEEEeccCHHH-------HHcC-CcEEEEcCCCccCCCCCcchHHHHHHHHHHcC--CCceEEEec
Q 017781 214 WKDVKWLQTITKLPILVKGVLTAED-------VQAG-AAGIIVSNHGARQLDYVPATIMALEEVVKATQ--GRIPVFLDG 283 (366)
Q Consensus 214 ~~~i~~lr~~~~~pv~vK~v~~~~d-------~~aG-ad~I~vs~~gg~~~~~~~~~~~~l~~i~~~~~--~~i~vi~~G 283 (366)
.+.++.+++. ++++-+-.+.+... ..+| +++|.. .-||--|.|......+.++.+.+. .+..|++.+
T Consensus 102 l~ai~~L~~~-GI~vn~T~vfs~~Qa~~aa~A~~aG~a~yisp--fvgR~dd~g~D~~~~i~~i~~i~~~~~~tkILaAS 178 (236)
T TIGR02134 102 GPLIQKLSAD-GITLNVTALTTIEQVEKVCQSFTDGVPGIVSV--FAGRIADTGVDPEPHMREALEIVAQKPGVELLWAS 178 (236)
T ss_pred HHHHHHHHHC-CCcEEeehcCCHHHHHHHHHHHhCCCCeEEEE--ecchhhhcCCCcHHHHHHHHHHHHhCCCcEEEEEc
Confidence 5667777775 88999988988876 2479 577754 335544556556666666655442 367788877
Q ss_pred CCCCHHHHHHHHHhCcCEEEecHHHHHHhh
Q 017781 284 GVRRGTDVFKALALGASGIFIGRPVVYSLA 313 (366)
Q Consensus 284 GI~~~~dv~kalalGAd~V~igr~~l~~l~ 313 (366)
+|+..++.++..+|||.|-+.-.++..+.
T Consensus 179 -~R~~~~v~~a~~~Gad~vTvp~~v~~~l~ 207 (236)
T TIGR02134 179 -PRELFNIIQADRIGCDIITCAHDILAKLP 207 (236)
T ss_pred -cCCHHHHHHHHHcCCCEEECCHHHHHHHH
Confidence 99999999999999999999988877764
|
This small family of proteins is a member of the transaldolase sybfamily represented by pfam00923. Coxiella and Staphylococcus lack members of the known transaldolase equivalog families and appear to require a transaldolase activity for completion of the pentose phosphate pathway. |
| >TIGR00167 cbbA ketose-bisphosphate aldolases | Back alignment and domain information |
|---|
Probab=95.93 E-value=1.6 Score=41.94 Aligned_cols=99 Identities=24% Similarity=0.320 Sum_probs=70.9
Q ss_pred HHcCCcEEEEcC---CCccCCCCCc--chHHHHHHHHHHcCCCceEEEecCCCCH-HHHHHHHHhCcCEEEecHHHHHHh
Q 017781 239 VQAGAAGIIVSN---HGARQLDYVP--ATIMALEEVVKATQGRIPVFLDGGVRRG-TDVFKALALGASGIFIGRPVVYSL 312 (366)
Q Consensus 239 ~~aGad~I~vs~---~gg~~~~~~~--~~~~~l~~i~~~~~~~i~vi~~GGI~~~-~dv~kalalGAd~V~igr~~l~~l 312 (366)
.+.|+|.+-++. ||.+. ..| -.++.|.+|.+.+ ++|+..=||=..+ +++.|++.+|..-|-+++-+..+.
T Consensus 168 ~~TgvD~LAvaiGt~HG~y~--~~p~~Ld~~~L~~I~~~v--~vPLVlHGgSG~~~e~~~~ai~~Gi~KiNi~T~l~~a~ 243 (288)
T TIGR00167 168 KLTGVDSLAAAIGNVHGVYK--GEPKGLDFERLEEIQKYV--NLPLVLHGGSGIPDEEIKKAISLGVVKVNIDTELQIAF 243 (288)
T ss_pred hccCCcEEeeccCccccccC--CCCCccCHHHHHHHHHHh--CCCEEEeCCCCCCHHHHHHHHHcCCeEEEcChHHHHHH
Confidence 567899999874 44322 223 3778999999988 8999999988777 578889999999999999775432
Q ss_pred hh-------cC------HHHHHHHHHHHHHHHHHHHHHcCCC
Q 017781 313 AA-------EG------EKGVRRVLEMLREEFELAMALSGCR 341 (366)
Q Consensus 313 ~~-------~G------~~gv~~~~~~l~~el~~~m~~~G~~ 341 (366)
.. .. ..-.....+.+.+..+..|+.+|+.
T Consensus 244 ~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~v~~~i~~~gs~ 285 (288)
T TIGR00167 244 AAAVRNYYAENKDYYDPRVWLRPGEKAMKEVVLEKIKLFGSA 285 (288)
T ss_pred HHHHHHHHHhCCCcCCHHHHHHHHHHHHHHHHHHHHHHhCCC
Confidence 10 00 1223445567777788888888764
|
fructose-bisphosphate and tagatose-bisphosphate aldolase. |
| >TIGR01858 tag_bisphos_ald class II aldolase, tagatose bisphosphate family | Back alignment and domain information |
|---|
Probab=95.92 E-value=1 Score=43.19 Aligned_cols=100 Identities=16% Similarity=0.270 Sum_probs=68.3
Q ss_pred HHcCCcEEEEcC---CCccCCCCCcchHHHHHHHHHHcCCCceEEEecCCCCH-HHHHHHHHhCcCEEEecHHHHHHhhh
Q 017781 239 VQAGAAGIIVSN---HGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRG-TDVFKALALGASGIFIGRPVVYSLAA 314 (366)
Q Consensus 239 ~~aGad~I~vs~---~gg~~~~~~~~~~~~l~~i~~~~~~~i~vi~~GGI~~~-~dv~kalalGAd~V~igr~~l~~l~~ 314 (366)
.+.|+|.+-++. ||-+. ....-.++.|.+|++.+ ++|+..=||=..+ +++.|++.+|..-|-+++-+..+...
T Consensus 163 ~~TgvD~LAvaiGt~HG~yk-~~p~Ldf~~L~~I~~~~--~iPLVlHGgSG~~~e~~~~ai~~Gi~KiNi~T~l~~a~~~ 239 (282)
T TIGR01858 163 EATGVDSLAVAIGTAHGLYK-KTPKLDFDRLAEIREVV--DVPLVLHGASDVPDEDVRRTIELGICKVNVATELKIAFSG 239 (282)
T ss_pred HHHCcCEEecccCccccCcC-CCCccCHHHHHHHHHHh--CCCeEEecCCCCCHHHHHHHHHcCCeEEEeCcHHHHHHHH
Confidence 678999998874 44322 11123678999999988 7999888865554 56678999999999999977544211
Q ss_pred -------cC------HHHHHHHHHHHHHHHHHHHHHcCCC
Q 017781 315 -------EG------EKGVRRVLEMLREEFELAMALSGCR 341 (366)
Q Consensus 315 -------~G------~~gv~~~~~~l~~el~~~m~~~G~~ 341 (366)
.. ..-.....+.+++-++..|+.+|..
T Consensus 240 ~~~~~~~~~~~~~d~~~~~~~~~~~~~~~v~~~i~~~gs~ 279 (282)
T TIGR01858 240 AVKAYFAENPQANDPRYYMRPGKDAMKKVVRNKINVCGSA 279 (282)
T ss_pred HHHHHHHhCCCcCCHHHHHHHHHHHHHHHHHHHHHHhCCC
Confidence 00 1223444566777778888888754
|
This model describes tagatose-1,6-bisphosphate aldolases, and perhaps other closely related class II aldolases. This tetrameric, Zn2+-dependent enzyme is related to the class II fructose bisphosphate aldolase; fructose 1,6-bisphosphate and tagatose 1,6 bisphosphate differ only in chirality at C4. |
| >PRK06978 nicotinate-nucleotide pyrophosphorylase; Provisional | Back alignment and domain information |
|---|
Probab=95.91 E-value=0.075 Score=51.01 Aligned_cols=82 Identities=24% Similarity=0.335 Sum_probs=60.5
Q ss_pred HHHHHHHhcC-CCEEEEeccCHHH----HHcCCcEEEEcCCCccCCCCCcchHHHHHHHHHHcCCCceEEEecCCCCHHH
Q 017781 216 DVKWLQTITK-LPILVKGVLTAED----VQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTD 290 (366)
Q Consensus 216 ~i~~lr~~~~-~pv~vK~v~~~~d----~~aGad~I~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~i~vi~~GGI~~~~d 290 (366)
.++.+|+... .+|.| .+-+.++ .++|+|.|-+.|. +.+.+.++.+.+++++.+-++||| +.+.
T Consensus 195 av~~~r~~~~~~kIeV-Evetleea~eA~~aGaDiImLDnm----------spe~l~~av~~~~~~~~lEaSGGI-t~~n 262 (294)
T PRK06978 195 ALDAAFALNAGVPVQI-EVETLAQLETALAHGAQSVLLDNF----------TLDMMREAVRVTAGRAVLEVSGGV-NFDT 262 (294)
T ss_pred HHHHHHHhCCCCcEEE-EcCCHHHHHHHHHcCCCEEEECCC----------CHHHHHHHHHhhcCCeEEEEECCC-CHHH
Confidence 4777776542 33332 4457766 9999999999883 345556666666667899999999 6888
Q ss_pred HHHHHHhCcCEEEecHHHH
Q 017781 291 VFKALALGASGIFIGRPVV 309 (366)
Q Consensus 291 v~kalalGAd~V~igr~~l 309 (366)
+.++-.+|.|.+.+|.+..
T Consensus 263 i~~yA~tGVD~IS~galth 281 (294)
T PRK06978 263 VRAFAETGVDRISIGALTK 281 (294)
T ss_pred HHHHHhcCCCEEEeCcccc
Confidence 8888889999999998654
|
|
| >PRK13306 ulaD 3-keto-L-gulonate-6-phosphate decarboxylase; Provisional | Back alignment and domain information |
|---|
Probab=95.89 E-value=0.059 Score=49.57 Aligned_cols=61 Identities=15% Similarity=0.133 Sum_probs=36.7
Q ss_pred HHHHHHHcCCCceEEEecCCCCHHHHHHHHHhCcCEEEecHHHHHHhhhcCHHHHHHHHHHHHHHHHH
Q 017781 266 LEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFIGRPVVYSLAAEGEKGVRRVLEMLREEFEL 333 (366)
Q Consensus 266 l~~i~~~~~~~i~vi~~GGI~~~~dv~kalalGAd~V~igr~~l~~l~~~G~~gv~~~~~~l~~el~~ 333 (366)
+..+++..+.+..+.++|||+-... -+....|||.+.+|||+..+ +-....++.++++++.
T Consensus 153 ~~~ir~~~~~~~~i~V~gGI~~~~~-~~~~~~~ad~~VvGr~I~~a------~dp~~a~~~i~~~i~~ 213 (216)
T PRK13306 153 LNKVKKLSDMGFKVSVTGGLVVEDL-KLFKGIPVKTFIAGRAIRGA------ADPAAAARAFKDEIAK 213 (216)
T ss_pred HHHHHHHhcCCCeEEEcCCCCHhhH-HHHhcCCCCEEEECCcccCC------CCHHHHHHHHHHHHHh
Confidence 3444444433456999999984322 12334599999999995432 1134456666666643
|
|
| >TIGR03586 PseI pseudaminic acid synthase | Back alignment and domain information |
|---|
Probab=95.86 E-value=1.1 Score=43.76 Aligned_cols=230 Identities=18% Similarity=0.205 Sum_probs=113.2
Q ss_pred ceEecccccccccCChhhHHHHHHHHHcCCceecCCCCCCCHHHHhccCC-Cc------eEE-----Eee--ecCCHHHH
Q 017781 73 PIMIAPTAMQKMAHPEGEYATARAASAAGTIMTLSSWSTSSVEEVASTGP-GI------RFF-----QLY--VYKDRNVV 138 (366)
Q Consensus 73 Pi~iApm~~~~l~~~~~e~~la~aa~~~G~~~~vs~~~~~~~e~i~~~~~-~~------~~~-----Qly--~~~d~~~~ 138 (366)
|++||=+|...-..-+--..++++|++.|.-.+= -+ ....+++..... .+ .|- .+| ..-..+..
T Consensus 2 ~~iIAEiG~NH~G~~~~A~~lI~~A~~aGAdavK-FQ-~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~el~~e~~ 79 (327)
T TIGR03586 2 PFIIAELSANHNGSLERALAMIEAAKAAGADAIK-LQ-TYTPDTITLDSDRPEFIIKGGLWDGRTLYDLYQEAHTPWEWH 79 (327)
T ss_pred CEEEEEECCCCCChHHHHHHHHHHHHHhCCCEEE-ee-eccHHHhhccccccccccccCCcCCccHHHHHHHhhCCHHHH
Confidence 6888887653211112224888999999987441 11 233444421111 11 110 000 01234556
Q ss_pred HHHHHHHHHcCCCEEEEecCCCCCcchhHHHhhhcCCCCccccccccccccCCCccccchhhHHHhhhccCCC-CCHHHH
Q 017781 139 AQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLTLKNFQGLDLGKMDEANDSGLAAYVAGQIDRS-LSWKDV 217 (366)
Q Consensus 139 ~~~l~ra~~~G~~ai~vtvd~p~~g~r~~d~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~-~~~~~i 217 (366)
.++.+.+++.|...+.- | ...+.-|+...+.+|. +. + ...+ ..+..+
T Consensus 80 ~~L~~~~~~~Gi~~~st----p-fd~~svd~l~~~~v~~-~K-----------I---------------~S~~~~n~~LL 127 (327)
T TIGR03586 80 KELFERAKELGLTIFSS----P-FDETAVDFLESLDVPA-YK-----------I---------------ASFEITDLPLI 127 (327)
T ss_pred HHHHHHHHHhCCcEEEc----c-CCHHHHHHHHHcCCCE-EE-----------E---------------CCccccCHHHH
Confidence 67777788888777642 2 1122223333332221 00 0 0112 246677
Q ss_pred HHHHHhcCCCEEEEec-cCHHH--------HHcCC-cEEEEcCCCccCCCCCcchHHHHHHHHHHcCCCceEEEecCCCC
Q 017781 218 KWLQTITKLPILVKGV-LTAED--------VQAGA-AGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRR 287 (366)
Q Consensus 218 ~~lr~~~~~pv~vK~v-~~~~d--------~~aGa-d~I~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~i~vi~~GGI~~ 287 (366)
+.+.+ +++||++|.. .+.++ .+.|. +.+.++....+.-......+..++.+++.. .+||-.+.=-..
T Consensus 128 ~~va~-~gkPvilstG~~t~~Ei~~Av~~i~~~g~~~i~LlhC~s~YP~~~~~~nL~~i~~lk~~f--~~pVG~SDHt~G 204 (327)
T TIGR03586 128 RYVAK-TGKPIIMSTGIATLEEIQEAVEACREAGCKDLVLLKCTSSYPAPLEDANLRTIPDLAERF--NVPVGLSDHTLG 204 (327)
T ss_pred HHHHh-cCCcEEEECCCCCHHHHHHHHHHHHHCCCCcEEEEecCCCCCCCcccCCHHHHHHHHHHh--CCCEEeeCCCCc
Confidence 77766 5899999955 56665 66787 444443221111111122456677666665 689855541111
Q ss_pred HHHHHHHHHhCcCEEEecHHHHHHhhhcCHHHH----HHHHHHHHHHHHHHHHHcCCC
Q 017781 288 GTDVFKALALGASGIFIGRPVVYSLAAEGEKGV----RRVLEMLREEFELAMALSGCR 341 (366)
Q Consensus 288 ~~dv~kalalGAd~V~igr~~l~~l~~~G~~gv----~~~~~~l~~el~~~m~~~G~~ 341 (366)
-.-...|+++||+ +|=+-|--.-+..|++.- -.-+..|.+.++..-..+|..
T Consensus 205 ~~~~~aAva~GA~--iIEkH~tld~~l~G~D~~~Sl~p~e~~~lv~~ir~~~~~lg~~ 260 (327)
T TIGR03586 205 ILAPVAAVALGAC--VIEKHFTLDRSDGGVDSAFSLEPDEFKALVKEVRNAWLALGEV 260 (327)
T ss_pred hHHHHHHHHcCCC--EEEeCCChhhcCCCCChhccCCHHHHHHHHHHHHHHHHHhCCC
Confidence 2333467789998 556655333222232210 112445666666666666653
|
|
| >PF03932 CutC: CutC family; InterPro: IPR005627 Copper transport in Escherichia coli is mediated by the products of at least six genes, cutA, cutB, cutC, cutD, cutE, and cutF | Back alignment and domain information |
|---|
Probab=95.84 E-value=0.14 Score=46.62 Aligned_cols=123 Identities=20% Similarity=0.304 Sum_probs=70.9
Q ss_pred eecCCHHHHHHHHHHHHHcCCCEEEEecCCCCCcchhHHHhhhcCCCCccccccccccccCCCccccchhhHHHhhhccC
Q 017781 130 YVYKDRNVVAQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLTLKNFQGLDLGKMDEANDSGLAAYVAGQID 209 (366)
Q Consensus 130 y~~~d~~~~~~~l~ra~~~G~~ai~vtvd~p~~g~r~~d~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d 209 (366)
|...+-+.+.+.++.++++|++++++.+-.+ |
T Consensus 66 Ys~~E~~~M~~dI~~~~~~GadG~VfG~L~~------------------------------------------------d 97 (201)
T PF03932_consen 66 YSDEEIEIMKEDIRMLRELGADGFVFGALTE------------------------------------------------D 97 (201)
T ss_dssp --HHHHHHHHHHHHHHHHTT-SEEEE--BET------------------------------------------------T
T ss_pred CCHHHHHHHHHHHHHHHHcCCCeeEEEeECC------------------------------------------------C
Confidence 5455567788888899999999998754211 2
Q ss_pred CCCCHHHHHHHHHhc-CCCEEEEec----cCHHH-----HHcCCcEEEEcCCCccCCCCCcchHHHHHHHHHHcCCCceE
Q 017781 210 RSLSWKDVKWLQTIT-KLPILVKGV----LTAED-----VQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPV 279 (366)
Q Consensus 210 ~~~~~~~i~~lr~~~-~~pv~vK~v----~~~~d-----~~aGad~I~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~i~v 279 (366)
...+.+.++.+.+.. +.|+.+=-. .++.+ .+.|++.|--|+.-. .....++.|.++.+..++++.|
T Consensus 98 g~iD~~~~~~Li~~a~~~~~tFHRAfD~~~d~~~al~~L~~lG~~rVLTSGg~~----~a~~g~~~L~~lv~~a~~~i~I 173 (201)
T PF03932_consen 98 GEIDEEALEELIEAAGGMPVTFHRAFDEVPDPEEALEQLIELGFDRVLTSGGAP----TALEGIENLKELVEQAKGRIEI 173 (201)
T ss_dssp SSB-HHHHHHHHHHHTTSEEEE-GGGGGSSTHHHHHHHHHHHT-SEEEESTTSS----STTTCHHHHHHHHHHHTTSSEE
T ss_pred CCcCHHHHHHHHHhcCCCeEEEeCcHHHhCCHHHHHHHHHhcCCCEEECCCCCC----CHHHHHHHHHHHHHHcCCCcEE
Confidence 234455555555544 455555422 22222 788999987665322 1223456677776666678999
Q ss_pred EEecCCCCHHHHHHHHH-hCcCEEEec
Q 017781 280 FLDGGVRRGTDVFKALA-LGASGIFIG 305 (366)
Q Consensus 280 i~~GGI~~~~dv~kala-lGAd~V~ig 305 (366)
++-|||+. +.+.+.++ .|+..+-.+
T Consensus 174 m~GgGv~~-~nv~~l~~~tg~~~~H~s 199 (201)
T PF03932_consen 174 MPGGGVRA-ENVPELVEETGVREIHGS 199 (201)
T ss_dssp EEESS--T-TTHHHHHHHHT-SEEEET
T ss_pred EecCCCCH-HHHHHHHHhhCCeEEeec
Confidence 99999964 55666666 888877543
|
A mutation in one or more of these genes results in an increased copper sensitivity. Members of this family are between 200 and 300 amino acids in length and are found in both eukaryotes and bacteria.; GO: 0005507 copper ion binding, 0055070 copper ion homeostasis; PDB: 2BDQ_A 3IWP_I 1X8C_B 1X7I_A 1TWD_B. |
| >cd02931 ER_like_FMN Enoate reductase (ER)-like FMN-binding domain | Back alignment and domain information |
|---|
Probab=95.81 E-value=0.17 Score=50.60 Aligned_cols=213 Identities=18% Similarity=0.135 Sum_probs=105.7
Q ss_pred eeEcCcccCCceEecccccccccCChh-----hHHHHHHHHHcCCceecCCCCCCCHHHHhccCCCceEEEeeecCC--H
Q 017781 63 TTVLGFKISMPIMIAPTAMQKMAHPEG-----EYATARAASAAGTIMTLSSWSTSSVEEVASTGPGIRFFQLYVYKD--R 135 (366)
Q Consensus 63 t~l~g~~l~~Pi~iApm~~~~l~~~~~-----e~~la~aa~~~G~~~~vs~~~~~~~e~i~~~~~~~~~~Qly~~~d--~ 135 (366)
.+|.+.++++-|+.|||+-.....+++ ..+.-+.-++-|+++++.+....+........+ ...|+-...+ -
T Consensus 5 ~~ig~~~lkNRiv~apm~~~~~~~~dg~~t~~~~~yy~~rA~gG~GlIi~~~~~v~~~~~~~~~~--~~~~~~~~~~~~i 82 (382)
T cd02931 5 IKIGKVEIKNRFAMAPMGPLGLADNDGAFNQRGIDYYVERAKGGTGLIITGVTMVDNEIEQFPMP--SLPCPTYNPTAFI 82 (382)
T ss_pred eeECCEEEeCCcEeCCcCcccccCCCCCCCHHHHHHHHHHhcCCCCEEEEEEEEeCCcccccCCC--CccccccCCHHHh
Confidence 467789999999999996322222332 345555556668888875543222110000001 1112211112 2
Q ss_pred HHHHHHHHHHHHcCCCEEEEecCCCCCcchhHHHhhhcCCCCccccccccccccCCCccccchhhHHHhhhccCCCCCHH
Q 017781 136 NVVAQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLTLKNFQGLDLGKMDEANDSGLAAYVAGQIDRSLSWK 215 (366)
Q Consensus 136 ~~~~~~l~ra~~~G~~ai~vtvd~p~~g~r~~d~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~ 215 (366)
+..+++.+.+.+.|++.+ +-+... .|+... ... ... ...+... .+.. ..........++.+
T Consensus 83 ~~~k~l~davh~~G~~i~-~QL~H~-~Gr~~~---~~~-~~~---~~~~~ps---~~~~-------~~~~~~~p~~mt~~ 143 (382)
T cd02931 83 RTAKEMTERVHAYGTKIF-LQLTAG-FGRVCI---PGF-LGE---DKPVAPS---PIPN-------RWLPEITCRELTTE 143 (382)
T ss_pred HHHHHHHHHHHHcCCEEE-EEccCc-CCCccC---ccc-cCC---CCccCCC---CCCC-------CcCCCCCCCcCCHH
Confidence 456778888888998765 344321 121110 000 000 0000000 0000 00000011346788
Q ss_pred HHHHHHHhcCCCEEEEeccCHHH-HHcCCcEEEEcC-C-Ccc--C----------CC-CC------cchHHHHHHHHHHc
Q 017781 216 DVKWLQTITKLPILVKGVLTAED-VQAGAAGIIVSN-H-GAR--Q----------LD-YV------PATIMALEEVVKAT 273 (366)
Q Consensus 216 ~i~~lr~~~~~pv~vK~v~~~~d-~~aGad~I~vs~-~-gg~--~----------~~-~~------~~~~~~l~~i~~~~ 273 (366)
+|+++.+.+-. ...- .++|.|+|.++. | |.- | -. +| .-..+.+..|++++
T Consensus 144 eI~~ii~~f~~--------AA~ra~~AGfDgVEih~ah~GyLl~qFLSp~~N~RtDeyGGslenR~rf~~eii~~vr~~~ 215 (382)
T cd02931 144 EVETFVGKFGE--------SAVIAKEAGFDGVEIHAVHEGYLLDQFTISLFNKRTDKYGGSLENRLRFAIEIVEEIKARC 215 (382)
T ss_pred HHHHHHHHHHH--------HHHHHHHcCCCEEEEeccccChHHHHhcCCccCCCCCcCCCCHHHHhHHHHHHHHHHHHhc
Confidence 88888876520 1112 789999999986 5 431 1 11 22 11346777777777
Q ss_pred CCCceEEE----------------------ecCCCCHH---HHHHHHH-hCcCEEEec
Q 017781 274 QGRIPVFL----------------------DGGVRRGT---DVFKALA-LGASGIFIG 305 (366)
Q Consensus 274 ~~~i~vi~----------------------~GGI~~~~---dv~kala-lGAd~V~ig 305 (366)
+.+++|.+ .||. +.+ ++++.|. .|+|.+-+.
T Consensus 216 g~~f~v~vri~~~~~~~~~~~~~~~~~~~~~~g~-~~e~~~~~~~~l~~~gvD~l~vs 272 (382)
T cd02931 216 GEDFPVSLRYSVKSYIKDLRQGALPGEEFQEKGR-DLEEGLKAAKILEEAGYDALDVD 272 (382)
T ss_pred CCCceEEEEEechhhccccccccccccccccCCC-CHHHHHHHHHHHHHhCCCEEEeC
Confidence 65555543 2233 334 4667775 799999885
|
Enoate reductase catalyzes the NADH-dependent reduction of carbon-carbon double bonds of several molecules, including nonactivated 2-enoates, alpha,beta-unsaturated aldehydes, cyclic ketones, and methylketones. ERs are similar to 2,4-dienoyl-CoA reductase from E. coli and to the old yellow enzyme from Saccharomyces cerevisiae. |
| >TIGR00259 thylakoid_BtpA membrane complex biogenesis protein, BtpA family | Back alignment and domain information |
|---|
Probab=95.72 E-value=0.046 Score=51.55 Aligned_cols=63 Identities=19% Similarity=0.300 Sum_probs=50.5
Q ss_pred HcCCcEEEEcCCCccCCCCCcchHHHHHHHHHHcCCCceEEEecCCCCHHHHHHHHHhCcCEEEecHHHH
Q 017781 240 QAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFIGRPVV 309 (366)
Q Consensus 240 ~aGad~I~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~i~vi~~GGI~~~~dv~kalalGAd~V~igr~~l 309 (366)
..++|+|+|++.+- +.++.++.|.++++..+ ++|+++.||+ +++.+.+++.. ||+|-+|+.|=
T Consensus 169 ~~~aDavivtG~~T----G~~~d~~~l~~vr~~~~-~~PvllggGv-t~eNv~e~l~~-adGviVgS~~K 231 (257)
T TIGR00259 169 RGLADAVILSGKTT----GTEVDLELLKLAKETVK-DTPVLAGSGV-NLENVEELLSI-ADGVIVATTIK 231 (257)
T ss_pred hcCCCEEEECcCCC----CCCCCHHHHHHHHhccC-CCeEEEECCC-CHHHHHHHHhh-CCEEEECCCcc
Confidence 34499999998541 23568888988887553 6899999999 68999999987 99999998863
|
Members of this family are found in C. elegans, Synechocystis sp., E. coli, and several of the Archaea. Members in Cyanobacteria have been shown to play a role in protein complex biogenesis, and designated BtpA (biogenesis of thylakoid protein). Homologs in non-photosynthetic species, where thylakoid intracytoplasmic membranes are lacking, are likely to act elsewhere in membrane protein biogenesis. |
| >TIGR01334 modD putative molybdenum utilization protein ModD | Back alignment and domain information |
|---|
Probab=95.69 E-value=0.094 Score=50.06 Aligned_cols=82 Identities=13% Similarity=0.136 Sum_probs=59.5
Q ss_pred HHHHHHHHhcC-CCEEEEeccCHHH----HHcCCcEEEEcCCCccCCCCCcchHHHHHHHHHHc---CCCceEEEecCCC
Q 017781 215 KDVKWLQTITK-LPILVKGVLTAED----VQAGAAGIIVSNHGARQLDYVPATIMALEEVVKAT---QGRIPVFLDGGVR 286 (366)
Q Consensus 215 ~~i~~lr~~~~-~pv~vK~v~~~~d----~~aGad~I~vs~~gg~~~~~~~~~~~~l~~i~~~~---~~~i~vi~~GGI~ 286 (366)
+.++.+|+..+ .+ +.=.+.+.++ .++|+|.|.++|. +.+.+.++.+.+ ..++.|.++|||
T Consensus 177 ~av~~~r~~~~~~k-IeVEv~tleea~ea~~~GaDiI~lDn~----------~~e~l~~~v~~l~~~~~~~~leasGGI- 244 (277)
T TIGR01334 177 GAIGRLKQTAPERK-ITVEADTIEQALTVLQASPDILQLDKF----------TPQQLHHLHERLKFFDHIPTLAAAGGI- 244 (277)
T ss_pred HHHHHHHHhCCCCC-EEEECCCHHHHHHHHHcCcCEEEECCC----------CHHHHHHHHHHHhccCCCEEEEEECCC-
Confidence 45888888753 34 3334567776 9999999998873 223333333333 347889999999
Q ss_pred CHHHHHHHHHhCcCEEEecHHH
Q 017781 287 RGTDVFKALALGASGIFIGRPV 308 (366)
Q Consensus 287 ~~~dv~kalalGAd~V~igr~~ 308 (366)
+.+.+.++..+|+|.+.+|.++
T Consensus 245 ~~~ni~~ya~~GvD~is~gal~ 266 (277)
T TIGR01334 245 NPENIADYIEAGIDLFITSAPY 266 (277)
T ss_pred CHHHHHHHHhcCCCEEEeCcce
Confidence 6889999999999999999874
|
The gene modD for a member of this family is found with molybdenum transport genes modABC in Rhodobacter capsulatus. However, disruption of modD causes only a 4-fold (rather than 500-fold for modA, modB, modC) change in the external molybdenum concentration required to suppress an alternative nitrogenase. ModD proteins are highly similar to nicotinate-nucleotide pyrophosphorylase (also called quinolinate phosphoribosyltransferase). The function unknown. |
| >PRK12737 gatY tagatose-bisphosphate aldolase; Reviewed | Back alignment and domain information |
|---|
Probab=95.69 E-value=1.6 Score=41.95 Aligned_cols=98 Identities=20% Similarity=0.280 Sum_probs=66.7
Q ss_pred HHcCCcEEEEcC---CCccCCCCCcc--hHHHHHHHHHHcCCCceEEEecCCCCH-HHHHHHHHhCcCEEEecHHHHHHh
Q 017781 239 VQAGAAGIIVSN---HGARQLDYVPA--TIMALEEVVKATQGRIPVFLDGGVRRG-TDVFKALALGASGIFIGRPVVYSL 312 (366)
Q Consensus 239 ~~aGad~I~vs~---~gg~~~~~~~~--~~~~l~~i~~~~~~~i~vi~~GGI~~~-~dv~kalalGAd~V~igr~~l~~l 312 (366)
.+.|+|.+-|+. ||-+ .+.| .++.|.+|++.+ ++|+..=||=..+ +++.||+.+|..-|-+++-+..+.
T Consensus 165 ~~TgvD~LAvaiGt~HG~y---~~~p~Ld~~~L~~I~~~~--~iPLVlHGgSG~~~e~~~kai~~Gi~KiNi~T~l~~a~ 239 (284)
T PRK12737 165 ERTGIDSLAVAIGTAHGLY---KGEPKLDFERLAEIREKV--SIPLVLHGASGVPDEDVKKAISLGICKVNVATELKIAF 239 (284)
T ss_pred HHhCCCEEeeccCcccccc---CCCCcCCHHHHHHHHHHh--CCCEEEeCCCCCCHHHHHHHHHCCCeEEEeCcHHHHHH
Confidence 567999999875 5532 2333 678899999988 7999888865554 556679999999999999765432
Q ss_pred h-------hcC------HHHHHHHHHHHHHHHHHHHHHcCCC
Q 017781 313 A-------AEG------EKGVRRVLEMLREEFELAMALSGCR 341 (366)
Q Consensus 313 ~-------~~G------~~gv~~~~~~l~~el~~~m~~~G~~ 341 (366)
. ... ..-.....+.+++..+..|+.+|..
T Consensus 240 ~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~v~~~i~~~gs~ 281 (284)
T PRK12737 240 SDAVKKYFYENPKANDPRKYMTPGKAAMKEVVREKIKVCGSE 281 (284)
T ss_pred HHHHHHHHHhCcCcCCHHHHHHHHHHHHHHHHHHHHHHhCCC
Confidence 1 000 1113334456777777788887754
|
|
| >PLN02617 imidazole glycerol phosphate synthase hisHF | Back alignment and domain information |
|---|
Probab=95.67 E-value=0.043 Score=57.18 Aligned_cols=70 Identities=21% Similarity=0.214 Sum_probs=54.7
Q ss_pred HHcCCcEEEEcCCCcc-C-CCCCcchHHHHHHHHHHcCCCceEEEecCCCCH-----------HHHHHHHHhCcCEEEec
Q 017781 239 VQAGAAGIIVSNHGAR-Q-LDYVPATIMALEEVVKATQGRIPVFLDGGVRRG-----------TDVFKALALGASGIFIG 305 (366)
Q Consensus 239 ~~aGad~I~vs~~gg~-~-~~~~~~~~~~l~~i~~~~~~~i~vi~~GGI~~~-----------~dv~kalalGAd~V~ig 305 (366)
.+.|||.|++-.-.+. . .....+.++.+.++++.+ .+|+.+-||||+- +++.+.|.+|||-|.||
T Consensus 277 ~~~Gadel~~~Di~~~~~~~~~~~~~~~~i~~i~~~~--~ip~~vGGGIr~~~d~~~~~~~~~e~~~~~l~~GadkV~i~ 354 (538)
T PLN02617 277 YKDGADEVAFLNITGFRDFPLGDLPMLEVLRRASENV--FVPLTVGGGIRDFTDANGRYYSSLEVASEYFRSGADKISIG 354 (538)
T ss_pred HHcCCCEEEEEECCCCcCCcccchhHHHHHHHHHhhC--CCCEEEcCCccccccccccccchHHHHHHHHHcCCCEEEEC
Confidence 8899999987653331 1 112234578899998887 7999999999998 55899999999999999
Q ss_pred HHHHH
Q 017781 306 RPVVY 310 (366)
Q Consensus 306 r~~l~ 310 (366)
+..+.
T Consensus 355 s~Av~ 359 (538)
T PLN02617 355 SDAVY 359 (538)
T ss_pred hHHHh
Confidence 97655
|
|
| >PF00478 IMPDH: IMP dehydrogenase / GMP reductase domain; InterPro: IPR001093 Synonym(s): Inosine-5'-monophosphate dehydrogenase, Inosinic acid dehydrogenase; Synonym(s): Guanosine 5'-monophosphate oxidoreductase This entry contains two related enzymes IMP dehydrogenase and GMP reducatase | Back alignment and domain information |
|---|
Probab=95.62 E-value=0.064 Score=52.81 Aligned_cols=61 Identities=21% Similarity=0.334 Sum_probs=46.0
Q ss_pred HHcCCcEEEEcCCCccCCCCCcchHHHHHHHHHHcCCCceEEEecCCCCHHHHHHHHHhCcCEEEec
Q 017781 239 VQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFIG 305 (366)
Q Consensus 239 ~~aGad~I~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~i~vi~~GGI~~~~dv~kalalGAd~V~ig 305 (366)
.++|+|.|+++...|+ ..-..+.+.++++..+ ++|||+ |.|-|++-+...+..|||+|-+|
T Consensus 117 ~~agvD~ivID~a~g~----s~~~~~~ik~ik~~~~-~~~via-GNV~T~e~a~~L~~aGad~vkVG 177 (352)
T PF00478_consen 117 VEAGVDVIVIDSAHGH----SEHVIDMIKKIKKKFP-DVPVIA-GNVVTYEGAKDLIDAGADAVKVG 177 (352)
T ss_dssp HHTT-SEEEEE-SSTT----SHHHHHHHHHHHHHST-TSEEEE-EEE-SHHHHHHHHHTT-SEEEES
T ss_pred HHcCCCEEEccccCcc----HHHHHHHHHHHHHhCC-CceEEe-cccCCHHHHHHHHHcCCCEEEEe
Confidence 8899999999854332 2335577888888775 789986 88999999999889999999888
|
These enzymes adopt a TIM barrel structure. IMP dehydrogenase (1.1.1.205 from EC) (IMPDH) catalyzes the rate-limiting reaction of de novo GTP biosynthesis, the NAD-dependent reduction of IMP into XMP []. |
| >PRK06852 aldolase; Validated | Back alignment and domain information |
|---|
Probab=95.61 E-value=0.19 Score=48.56 Aligned_cols=66 Identities=26% Similarity=0.282 Sum_probs=45.0
Q ss_pred HHcCCcEEEEcCCCccCCCCCcchHHHHHHHHHHcCCCceEEEecCCCCH-HHHH----HHHH-hCcCEEEecHHHH
Q 017781 239 VQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRG-TDVF----KALA-LGASGIFIGRPVV 309 (366)
Q Consensus 239 ~~aGad~I~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~i~vi~~GGI~~~-~dv~----kala-lGAd~V~igr~~l 309 (366)
.+.|||.|.+--.+- .+-...+.+.++.+.+ +.+||++.||=+.. .|++ .++. .||.+|.+||=+.
T Consensus 198 aELGADIVKv~y~~~----~~~g~~e~f~~vv~~~-g~vpVviaGG~k~~~~e~L~~v~~ai~~aGa~Gv~~GRNIf 269 (304)
T PRK06852 198 ACLGADFVKVNYPKK----EGANPAELFKEAVLAA-GRTKVVCAGGSSTDPEEFLKQLYEQIHISGASGNATGRNIH 269 (304)
T ss_pred HHHcCCEEEecCCCc----CCCCCHHHHHHHHHhC-CCCcEEEeCCCCCCHHHHHHHHHHHHHHcCCceeeechhhh
Confidence 999999998743210 0012345666676665 36899999998853 3444 4666 8999999999653
|
|
| >PRK08091 ribulose-phosphate 3-epimerase; Validated | Back alignment and domain information |
|---|
Probab=95.53 E-value=0.44 Score=44.23 Aligned_cols=48 Identities=8% Similarity=-0.055 Sum_probs=35.5
Q ss_pred cchHHHHHHHHHHcC---CCceEEEecCCCCHHHHHHHHHhCcCEEEecHHH
Q 017781 260 PATIMALEEVVKATQ---GRIPVFLDGGVRRGTDVFKALALGASGIFIGRPV 308 (366)
Q Consensus 260 ~~~~~~l~~i~~~~~---~~i~vi~~GGI~~~~dv~kalalGAd~V~igr~~ 308 (366)
+..++-+.++++... .++.|-+||||+ .+-+.+..++|||.+.+|+.+
T Consensus 160 ~~~l~KI~~lr~~~~~~~~~~~IeVDGGI~-~~ti~~l~~aGaD~~V~GSal 210 (228)
T PRK08091 160 DLILDRVIQVENRLGNRRVEKLISIDGSMT-LELASYLKQHQIDWVVSGSAL 210 (228)
T ss_pred HHHHHHHHHHHHHHHhcCCCceEEEECCCC-HHHHHHHHHCCCCEEEEChhh
Confidence 345555665555432 257799999996 667778889999999999874
|
|
| >PRK06843 inosine 5-monophosphate dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=95.52 E-value=0.081 Score=53.10 Aligned_cols=61 Identities=11% Similarity=0.256 Sum_probs=47.9
Q ss_pred HHcCCcEEEEcCCCccCCCCCcchHHHHHHHHHHcCCCceEEEecCCCCHHHHHHHHHhCcCEEEec
Q 017781 239 VQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFIG 305 (366)
Q Consensus 239 ~~aGad~I~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~i~vi~~GGI~~~~dv~kalalGAd~V~ig 305 (366)
.++|+|.|++....|. +....+.+.++++..+ +++|++ |+|.|.+++..++.+|||+|.+|
T Consensus 162 v~aGvDvI~iD~a~g~----~~~~~~~v~~ik~~~p-~~~vi~-g~V~T~e~a~~l~~aGaD~I~vG 222 (404)
T PRK06843 162 VKAHVDILVIDSAHGH----STRIIELVKKIKTKYP-NLDLIA-GNIVTKEAALDLISVGADCLKVG 222 (404)
T ss_pred HhcCCCEEEEECCCCC----ChhHHHHHHHHHhhCC-CCcEEE-EecCCHHHHHHHHHcCCCEEEEC
Confidence 8999999998754332 3345677888887664 466554 88999999999999999999877
|
|
| >PLN02898 HMP-P kinase/thiamin-monophosphate pyrophosphorylase | Back alignment and domain information |
|---|
Probab=95.51 E-value=0.18 Score=52.21 Aligned_cols=91 Identities=19% Similarity=0.253 Sum_probs=61.8
Q ss_pred HHHHHHhcCCCEEEE-eccCHHH----HHcCCcEEEEcCCCccC--CCCCcchHHHHHHHHHHcCCCceEEEecCCCCHH
Q 017781 217 VKWLQTITKLPILVK-GVLTAED----VQAGAAGIIVSNHGARQ--LDYVPATIMALEEVVKATQGRIPVFLDGGVRRGT 289 (366)
Q Consensus 217 i~~lr~~~~~pv~vK-~v~~~~d----~~aGad~I~vs~~gg~~--~~~~~~~~~~l~~i~~~~~~~i~vi~~GGI~~~~ 289 (366)
+...|+..+...++. -+.+.++ .+.|+|+|.++--.-+. .+..+..++.+.++.+.. ++||++-|||. .+
T Consensus 380 ~~~~r~~~~~~~~iG~S~h~~~e~~~a~~~gadyi~~gpif~t~tk~~~~~~g~~~~~~~~~~~--~~Pv~aiGGI~-~~ 456 (502)
T PLN02898 380 VRLARSLLGPGKIIGVSCKTPEQAEQAWKDGADYIGCGGVFPTNTKANNKTIGLDGLREVCEAS--KLPVVAIGGIS-AS 456 (502)
T ss_pred HHHHHHhcCCCCEEEEeCCCHHHHHHHhhcCCCEEEECCeecCCCCCCCCCCCHHHHHHHHHcC--CCCEEEECCCC-HH
Confidence 345555543223333 3456666 68899999876432211 112223467777776655 79999999995 99
Q ss_pred HHHHHHHhCcC---EEEecHHHHH
Q 017781 290 DVFKALALGAS---GIFIGRPVVY 310 (366)
Q Consensus 290 dv~kalalGAd---~V~igr~~l~ 310 (366)
++.+.+++||+ +|.+++.++.
T Consensus 457 ~~~~~~~~G~~~~~gvav~~~i~~ 480 (502)
T PLN02898 457 NAASVMESGAPNLKGVAVVSALFD 480 (502)
T ss_pred HHHHHHHcCCCcCceEEEEeHHhc
Confidence 99999999999 9999999863
|
|
| >PLN02417 dihydrodipicolinate synthase | Back alignment and domain information |
|---|
Probab=95.50 E-value=0.077 Score=50.68 Aligned_cols=103 Identities=17% Similarity=0.262 Sum_probs=66.3
Q ss_pred CCCCHHHHHHHHHhcCCCEEEEeccCHHHHHcCCcEEEEcCCCccCCCCCcc-hHHHHHHHHHHcCCCceEEEecCCCCH
Q 017781 210 RSLSWKDVKWLQTITKLPILVKGVLTAEDVQAGAAGIIVSNHGARQLDYVPA-TIMALEEVVKATQGRIPVFLDGGVRRG 288 (366)
Q Consensus 210 ~~~~~~~i~~lr~~~~~pv~vK~v~~~~d~~aGad~I~vs~~gg~~~~~~~~-~~~~l~~i~~~~~~~i~vi~~GGI~~~ 288 (366)
...+++.++++.+.. .+.|+|+|.+.++.|-...-... ..+.+..+++.+.+++||++.=|-.+-
T Consensus 17 g~iD~~~~~~~i~~l--------------~~~Gv~Gi~~~GstGE~~~ls~~Er~~~~~~~~~~~~~~~pvi~gv~~~~t 82 (280)
T PLN02417 17 GRFDLEAYDSLVNMQ--------------IENGAEGLIVGGTTGEGQLMSWDEHIMLIGHTVNCFGGKIKVIGNTGSNST 82 (280)
T ss_pred CCcCHHHHHHHHHHH--------------HHcCCCEEEECccCcchhhCCHHHHHHHHHHHHHHhCCCCcEEEECCCccH
Confidence 345666655554432 46799999998876643221221 234555566667778999886666566
Q ss_pred HHHHH----HHHhCcCEEEecHHHHHHhhhcCHHHHHHHHHHHHH
Q 017781 289 TDVFK----ALALGASGIFIGRPVVYSLAAEGEKGVRRVLEMLRE 329 (366)
Q Consensus 289 ~dv~k----alalGAd~V~igr~~l~~l~~~G~~gv~~~~~~l~~ 329 (366)
.|+++ |-++|||+|++-.|+++. ..++++.+++..+.+
T Consensus 83 ~~~i~~a~~a~~~Gadav~~~~P~y~~---~~~~~i~~~f~~va~ 124 (280)
T PLN02417 83 REAIHATEQGFAVGMHAALHINPYYGK---TSQEGLIKHFETVLD 124 (280)
T ss_pred HHHHHHHHHHHHcCCCEEEEcCCccCC---CCHHHHHHHHHHHHh
Confidence 66664 456899999999998664 245666666655544
|
|
| >PRK06096 molybdenum transport protein ModD; Provisional | Back alignment and domain information |
|---|
Probab=95.46 E-value=0.15 Score=48.92 Aligned_cols=82 Identities=12% Similarity=0.128 Sum_probs=59.6
Q ss_pred HHHHHHHHhcCCCEEEEeccCHHH----HHcCCcEEEEcCCCccCCCCCcchHHHHHHHHHHc---CCCceEEEecCCCC
Q 017781 215 KDVKWLQTITKLPILVKGVLTAED----VQAGAAGIIVSNHGARQLDYVPATIMALEEVVKAT---QGRIPVFLDGGVRR 287 (366)
Q Consensus 215 ~~i~~lr~~~~~pv~vK~v~~~~d----~~aGad~I~vs~~gg~~~~~~~~~~~~l~~i~~~~---~~~i~vi~~GGI~~ 287 (366)
+.++.+|+..+-.-+.=.+.+.++ .++|+|.|.+.|. +.+.+.++.+.+ ..++.+-++||| +
T Consensus 178 ~av~~~r~~~~~~kIeVEv~tleqa~ea~~agaDiI~LDn~----------~~e~l~~av~~~~~~~~~~~leaSGGI-~ 246 (284)
T PRK06096 178 GAINQLRRHAPEKKIVVEADTPKEAIAALRAQPDVLQLDKF----------SPQQATEIAQIAPSLAPHCTLSLAGGI-N 246 (284)
T ss_pred HHHHHHHHhCCCCCEEEECCCHHHHHHHHHcCCCEEEECCC----------CHHHHHHHHHHhhccCCCeEEEEECCC-C
Confidence 458888887642224445567777 9999999998773 223344444433 257889999999 6
Q ss_pred HHHHHHHHHhCcCEEEecHH
Q 017781 288 GTDVFKALALGASGIFIGRP 307 (366)
Q Consensus 288 ~~dv~kalalGAd~V~igr~ 307 (366)
.+.+.++-.+|+|.+.+|.+
T Consensus 247 ~~ni~~yA~tGvD~Is~gal 266 (284)
T PRK06096 247 LNTLKNYADCGIRLFITSAP 266 (284)
T ss_pred HHHHHHHHhcCCCEEEECcc
Confidence 88888888899999999976
|
|
| >COG2876 AroA 3-deoxy-D-arabino-heptulosonate 7-phosphate (DAHP) synthase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=95.40 E-value=1.3 Score=41.87 Aligned_cols=88 Identities=27% Similarity=0.416 Sum_probs=58.8
Q ss_pred HHHHHHHHhcCCCEEEEec--cCHHH--------HHcCCcEEEEcCCCccCCCCC-c--chHHHHHHHHHHcCCCceEEE
Q 017781 215 KDVKWLQTITKLPILVKGV--LTAED--------VQAGAAGIIVSNHGARQLDYV-P--ATIMALEEVVKATQGRIPVFL 281 (366)
Q Consensus 215 ~~i~~lr~~~~~pv~vK~v--~~~~d--------~~aGad~I~vs~~gg~~~~~~-~--~~~~~l~~i~~~~~~~i~vi~ 281 (366)
+.++++-+ .++||++|-. .|.++ ...|-..|++.-+|=|..+.+ + -.+.+++-+++.. .+|||+
T Consensus 143 ~LLke~G~-~~kPvLLKRg~~aTieEwL~AAEYI~s~GN~~vILCERGIRtfe~~TRntLDi~aV~~~kq~T--HLPViv 219 (286)
T COG2876 143 ALLKEVGR-QNKPVLLKRGLSATIEEWLNAAEYILSHGNGNVILCERGIRTFEKATRNTLDISAVPILKQET--HLPVIV 219 (286)
T ss_pred HHHHHhcc-cCCCeEEecCccccHHHHHHHHHHHHhCCCCcEEEEecccccccccccceechHHHHHHHhhc--CCCEEE
Confidence 34444433 4899999955 46666 788888888887776655443 2 2456777777665 799999
Q ss_pred ec----CCCCHHH--HHHHHHhCcCEEEec
Q 017781 282 DG----GVRRGTD--VFKALALGASGIFIG 305 (366)
Q Consensus 282 ~G----GI~~~~d--v~kalalGAd~V~ig 305 (366)
|= |=|+... +..|++.|||++|+-
T Consensus 220 DpSH~~Grr~lv~pla~AA~AaGAdglmiE 249 (286)
T COG2876 220 DPSHATGRRDLVEPLAKAAIAAGADGLMIE 249 (286)
T ss_pred CCCCcccchhhHHHHHHHHHhccCCeeEEE
Confidence 74 3333322 235678999999986
|
|
| >COG3010 NanE Putative N-acetylmannosamine-6-phosphate epimerase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=95.34 E-value=0.53 Score=42.75 Aligned_cols=84 Identities=19% Similarity=0.183 Sum_probs=55.1
Q ss_pred CHHHHHHHHHhcCCCEE--EE---------eccCHHH----HHcCCcEEEEcCCCccCCCCCcchHHHHHHHHHHcCCCc
Q 017781 213 SWKDVKWLQTITKLPIL--VK---------GVLTAED----VQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRI 277 (366)
Q Consensus 213 ~~~~i~~lr~~~~~pv~--vK---------~v~~~~d----~~aGad~I~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~i 277 (366)
..++|+.+|+.+++||| +| +..+.+| .++|++.|-+...-....++ +++ ++.+..+ .-
T Consensus 54 gv~dIkai~~~v~vPIIGIiKrd~~~s~v~ITptlkeVd~L~~~Ga~IIA~DaT~R~RP~~---~~~---~~i~~~k-~~ 126 (229)
T COG3010 54 GVEDIKAIRAVVDVPIIGIIKRDYPDSPVRITPTLKEVDALAEAGADIIAFDATDRPRPDG---DLE---ELIARIK-YP 126 (229)
T ss_pred chhhHHHHHhhCCCCeEEEEecCCCCCCceecccHHHHHHHHHCCCcEEEeecccCCCCcc---hHH---HHHHHhh-cC
Confidence 45688889999999975 33 1234444 99999999887754322222 332 2222221 12
Q ss_pred eEEEecCCCCHHHHHHHHHhCcCEEE
Q 017781 278 PVFLDGGVRRGTDVFKALALGASGIF 303 (366)
Q Consensus 278 ~vi~~GGI~~~~dv~kalalGAd~V~ 303 (366)
-.++--.+.+.+|..-|..+|+|.|+
T Consensus 127 ~~l~MAD~St~ee~l~a~~~G~D~IG 152 (229)
T COG3010 127 GQLAMADCSTFEEGLNAHKLGFDIIG 152 (229)
T ss_pred CcEEEeccCCHHHHHHHHHcCCcEEe
Confidence 24444568899999999999999985
|
|
| >PRK09517 multifunctional thiamine-phosphate pyrophosphorylase/synthase/phosphomethylpyrimidine kinase; Provisional | Back alignment and domain information |
|---|
Probab=95.34 E-value=0.089 Score=57.22 Aligned_cols=68 Identities=15% Similarity=0.115 Sum_probs=51.0
Q ss_pred CCcEEEEcCCCccC-CCC-C-cchHHHHHHHHHHcCC-CceEEEecCCCCHHHHHHHHHhCcCEEEecHHHHH
Q 017781 242 GAAGIIVSNHGARQ-LDY-V-PATIMALEEVVKATQG-RIPVFLDGGVRRGTDVFKALALGASGIFIGRPVVY 310 (366)
Q Consensus 242 Gad~I~vs~~gg~~-~~~-~-~~~~~~l~~i~~~~~~-~i~vi~~GGI~~~~dv~kalalGAd~V~igr~~l~ 310 (366)
|+|+|.++--.-+. ... . +..++.+.++++.+.. .+||++-||| +.+++.++++.||++|.+-+.++.
T Consensus 128 gaDYi~~Gpvf~T~tK~~~~~~lG~~~l~~~~~~~~~~~iPv~AiGGI-~~~~~~~~~~~Ga~giAvisai~~ 199 (755)
T PRK09517 128 LPDVIGIGPVASTATKPDAPPALGVDGIAEIAAVAQDHGIASVAIGGV-GLRNAAELAATGIDGLCVVSAIMA 199 (755)
T ss_pred CCCEEEECCccccCCCCCCCCCCCHHHHHHHHHhcCcCCCCEEEECCC-CHHHHHHHHHcCCCEEEEehHhhC
Confidence 59999987543221 111 1 2356778888777621 3999999999 899999999999999999999863
|
|
| >cd00452 KDPG_aldolase KDPG and KHG aldolase | Back alignment and domain information |
|---|
Probab=95.31 E-value=0.14 Score=45.95 Aligned_cols=76 Identities=26% Similarity=0.319 Sum_probs=53.8
Q ss_pred HHHHHHHHHhcC-CCEEEEeccCHHH----HHcCCcEEEEcCCCccCCCCCcchHHHHHHHHHHcCCCceEEEecCCCCH
Q 017781 214 WKDVKWLQTITK-LPILVKGVLTAED----VQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRG 288 (366)
Q Consensus 214 ~~~i~~lr~~~~-~pv~vK~v~~~~d----~~aGad~I~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~i~vi~~GGI~~~ 288 (366)
.+.++.+++.++ +++..-.+.+.++ .++|+|+|+..+ ...+ +.+.++.. .++++. |+.|.
T Consensus 43 ~~~i~~l~~~~~~~~iGag~v~~~~~~~~a~~~Ga~~i~~p~----------~~~~-~~~~~~~~--~~~~i~--gv~t~ 107 (190)
T cd00452 43 LEAIRALRKEFPEALIGAGTVLTPEQADAAIAAGAQFIVSPG----------LDPE-VVKAANRA--GIPLLP--GVATP 107 (190)
T ss_pred HHHHHHHHHHCCCCEEEEEeCCCHHHHHHHHHcCCCEEEcCC----------CCHH-HHHHHHHc--CCcEEC--CcCCH
Confidence 456899998875 5555556666665 899999996322 1122 23333334 567765 78899
Q ss_pred HHHHHHHHhCcCEEEe
Q 017781 289 TDVFKALALGASGIFI 304 (366)
Q Consensus 289 ~dv~kalalGAd~V~i 304 (366)
+++.+|+.+|||.+.+
T Consensus 108 ~e~~~A~~~Gad~i~~ 123 (190)
T cd00452 108 TEIMQALELGADIVKL 123 (190)
T ss_pred HHHHHHHHCCCCEEEE
Confidence 9999999999999998
|
This family belongs to the class I adolases whose reaction mechanism involves Schiff base formation between a substrate carbonyl and lysine residue in the active site. 2-keto-3-deoxy-6-phosphogluconate (KDPG) aldolase, is best known for its role in the Entner-Doudoroff pathway of bacteria, where it catalyzes the reversible cleavage of KDPG to pyruvate and glyceraldehyde-3-phosphate. 2-keto-4-hydroxyglutarate (KHG) aldolase, which has enzymatic specificity toward glyoxylate, forming KHG in the presence of pyruvate, and is capable of regulating glyoxylate levels in the glyoxylate bypass, an alternate pathway when bacteria are grown on acetate carbon sources. |
| >cd03319 L-Ala-DL-Glu_epimerase L-Ala-D/L-Glu epimerase catalyzes the epimerization of L-Ala-D/L-Glu and other dipeptides | Back alignment and domain information |
|---|
Probab=95.30 E-value=0.44 Score=46.10 Aligned_cols=123 Identities=15% Similarity=0.170 Sum_probs=80.6
Q ss_pred eEEEeeecCCHHHHHHHHHHHHHcCCCEEEEecCCCCCcchhHHHhhhcCCCCccccccccccccCCCccccchhhHHHh
Q 017781 125 RFFQLYVYKDRNVVAQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLTLKNFQGLDLGKMDEANDSGLAAYV 204 (366)
Q Consensus 125 ~~~Qly~~~d~~~~~~~l~ra~~~G~~ai~vtvd~p~~g~r~~d~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 204 (366)
..+++. ..+++...+.++++.+.|++++-+.++..
T Consensus 126 ~~~~~~-~~~~~~~~~~~~~~~~~Gf~~iKik~g~~-------------------------------------------- 160 (316)
T cd03319 126 TDYTIS-IDTPEAMAAAAKKAAKRGFPLLKIKLGGD-------------------------------------------- 160 (316)
T ss_pred eEEEEe-CCCHHHHHHHHHHHHHcCCCEEEEEeCCC--------------------------------------------
Confidence 334543 35667777777788888999988765321
Q ss_pred hhccCCCCCHHHHHHHHHhcC-CCEEEEecc--CHHH--------HHcCCcEEEEcCCCccCCCCCcchHHHHHHHHHHc
Q 017781 205 AGQIDRSLSWKDVKWLQTITK-LPILVKGVL--TAED--------VQAGAAGIIVSNHGARQLDYVPATIMALEEVVKAT 273 (366)
Q Consensus 205 ~~~~d~~~~~~~i~~lr~~~~-~pv~vK~v~--~~~d--------~~aGad~I~vs~~gg~~~~~~~~~~~~l~~i~~~~ 273 (366)
+....+.++.+|+.++ .++.++.-. +.++ .+.|+++|- +. ..+..++.+.++++..
T Consensus 161 -----~~~d~~~v~~lr~~~g~~~l~vD~n~~~~~~~A~~~~~~l~~~~l~~iE-------eP-~~~~d~~~~~~L~~~~ 227 (316)
T cd03319 161 -----LEDDIERIRAIREAAPDARLRVDANQGWTPEEAVELLRELAELGVELIE-------QP-VPAGDDDGLAYLRDKS 227 (316)
T ss_pred -----hhhHHHHHHHHHHhCCCCeEEEeCCCCcCHHHHHHHHHHHHhcCCCEEE-------CC-CCCCCHHHHHHHHhcC
Confidence 1123455666666553 556666432 2232 455666663 11 1234577788888876
Q ss_pred CCCceEEEecCCCCHHHHHHHHHhC-cCEEEecHH
Q 017781 274 QGRIPVFLDGGVRRGTDVFKALALG-ASGIFIGRP 307 (366)
Q Consensus 274 ~~~i~vi~~GGI~~~~dv~kalalG-Ad~V~igr~ 307 (366)
++||++++.+.+..|+.+++..| +|.|++--.
T Consensus 228 --~ipIa~~E~~~~~~~~~~~~~~~~~d~v~~~~~ 260 (316)
T cd03319 228 --PLPIMADESCFSAADAARLAGGGAYDGINIKLM 260 (316)
T ss_pred --CCCEEEeCCCCCHHHHHHHHhcCCCCEEEEecc
Confidence 79999999999999999999965 899988643
|
The genomic context and the substrate specificity of characterized members of this family from E.coli and B.subtilis indicates a possible role in the metabolism of the murein peptide of peptidoglycan, of which L-Ala-D-Glu is a component. L-Ala-D/L-Glu epimerase is a member of the enolase-superfamily, which is characterized by the presence of an enolate anion intermediate which is generated by abstraction of the alpha-proton of the carboxylate substrate by an active site residue and is stabilized by coordination to the essential Mg2+ ion. |
| >PRK14057 epimerase; Provisional | Back alignment and domain information |
|---|
Probab=95.25 E-value=0.69 Score=43.58 Aligned_cols=48 Identities=10% Similarity=0.163 Sum_probs=35.0
Q ss_pred cchHHHHHHHHHHcC---CCceEEEecCCCCHHHHHHHHHhCcCEEEecHHH
Q 017781 260 PATIMALEEVVKATQ---GRIPVFLDGGVRRGTDVFKALALGASGIFIGRPV 308 (366)
Q Consensus 260 ~~~~~~l~~i~~~~~---~~i~vi~~GGI~~~~dv~kalalGAd~V~igr~~ 308 (366)
+..++-+.++++... .++.|-+||||. .+-+.+..++|||.+..|+.+
T Consensus 174 ~~~l~KI~~lr~~~~~~~~~~~IeVDGGI~-~~ti~~l~~aGad~~V~GSal 224 (254)
T PRK14057 174 SDLHERVAQLLCLLGDKREGKIIVIDGSLT-QDQLPSLIAQGIDRVVSGSAL 224 (254)
T ss_pred HHHHHHHHHHHHHHHhcCCCceEEEECCCC-HHHHHHHHHCCCCEEEEChHh
Confidence 345555555555432 257899999995 457778889999999999875
|
|
| >PRK11572 copper homeostasis protein CutC; Provisional | Back alignment and domain information |
|---|
Probab=95.25 E-value=0.48 Score=44.41 Aligned_cols=122 Identities=16% Similarity=0.250 Sum_probs=74.5
Q ss_pred eecCCHHHHHHHHHHHHHcCCCEEEEecCCCCCcchhHHHhhhcCCCCccccccccccccCCCccccchhhHHHhhhccC
Q 017781 130 YVYKDRNVVAQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLTLKNFQGLDLGKMDEANDSGLAAYVAGQID 209 (366)
Q Consensus 130 y~~~d~~~~~~~l~ra~~~G~~ai~vtvd~p~~g~r~~d~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d 209 (366)
|...+.+.+.+.++.++++|++++++.+-.+ +
T Consensus 67 Ys~~E~~~M~~di~~~~~~GadGvV~G~L~~------------------------------------------------d 98 (248)
T PRK11572 67 YSDGEFAAMLEDIATVRELGFPGLVTGVLDV------------------------------------------------D 98 (248)
T ss_pred CCHHHHHHHHHHHHHHHHcCCCEEEEeeECC------------------------------------------------C
Confidence 4445566788888899999999998754322 2
Q ss_pred CCCCHHHHHHHHHhc-CCCEEEEec----cCHH----H-HHcCCcEEEEcCCCccCCCCCcchHHHHHHHHHHcCCCceE
Q 017781 210 RSLSWKDVKWLQTIT-KLPILVKGV----LTAE----D-VQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPV 279 (366)
Q Consensus 210 ~~~~~~~i~~lr~~~-~~pv~vK~v----~~~~----d-~~aGad~I~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~i~v 279 (366)
...+.+.++.+.+.. +.|+.+=-. .++. . .+.|+|.|--|+... .....++.|.++.+..++.+ |
T Consensus 99 g~vD~~~~~~Li~~a~~~~vTFHRAfD~~~d~~~al~~l~~lG~~rILTSGg~~----~a~~g~~~L~~lv~~a~~~~-I 173 (248)
T PRK11572 99 GHVDMPRMRKIMAAAGPLAVTFHRAFDMCANPLNALKQLADLGVARILTSGQQQ----DAEQGLSLIMELIAASDGPI-I 173 (248)
T ss_pred CCcCHHHHHHHHHHhcCCceEEechhhccCCHHHHHHHHHHcCCCEEECCCCCC----CHHHHHHHHHHHHHhcCCCE-E
Confidence 233455555555554 355544322 1222 2 888999987654221 12223456666666554434 7
Q ss_pred EEecCCCCHHHHHHHHHhCcCEEEec
Q 017781 280 FLDGGVRRGTDVFKALALGASGIFIG 305 (366)
Q Consensus 280 i~~GGI~~~~dv~kalalGAd~V~ig 305 (366)
++-|||+ ...+.+-...|+..+-..
T Consensus 174 m~GgGV~-~~Nv~~l~~tG~~~~H~s 198 (248)
T PRK11572 174 MAGAGVR-LSNLHKFLDAGVREVHSS 198 (248)
T ss_pred EeCCCCC-HHHHHHHHHcCCCEEeeC
Confidence 7777775 667777668999988765
|
|
| >COG0214 SNZ1 Pyridoxine biosynthesis enzyme [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=95.24 E-value=0.023 Score=52.20 Aligned_cols=47 Identities=34% Similarity=0.581 Sum_probs=37.9
Q ss_pred hHHHHHHHHHHcCCCce--EEEecCCCCHHHHHHHHHhCcCEEEecHHHHH
Q 017781 262 TIMALEEVVKATQGRIP--VFLDGGVRRGTDVFKALALGASGIFIGRPVVY 310 (366)
Q Consensus 262 ~~~~l~~i~~~~~~~i~--vi~~GGI~~~~dv~kalalGAd~V~igr~~l~ 310 (366)
+.+.+.++.+.- ++| -++.|||.|+.|++-.+.||||+|.+|+-++.
T Consensus 194 p~elv~~~~~~g--rLPVvnFAAGGvATPADAALMM~LGadGVFVGSGIFK 242 (296)
T COG0214 194 PYELVKEVAKLG--RLPVVNFAAGGVATPADAALMMQLGADGVFVGSGIFK 242 (296)
T ss_pred hHHHHHHHHHhC--CCCeEeecccCcCChhHHHHHHHhCCCeEEecccccC
Confidence 456666666543 555 47999999999999999999999999997654
|
|
| >TIGR02313 HpaI-NOT-DapA 2,4-dihydroxyhept-2-ene-1,7-dioic acid aldolase | Back alignment and domain information |
|---|
Probab=95.22 E-value=0.11 Score=50.04 Aligned_cols=89 Identities=16% Similarity=0.219 Sum_probs=59.4
Q ss_pred HHcCCcEEEEcCCCccCCCCCcc-hHHHHHHHHHHcCCCceEEEecCCCCHHHHH----HHHHhCcCEEEecHHHHHHhh
Q 017781 239 VQAGAAGIIVSNHGARQLDYVPA-TIMALEEVVKATQGRIPVFLDGGVRRGTDVF----KALALGASGIFIGRPVVYSLA 313 (366)
Q Consensus 239 ~~aGad~I~vs~~gg~~~~~~~~-~~~~l~~i~~~~~~~i~vi~~GGI~~~~dv~----kalalGAd~V~igr~~l~~l~ 313 (366)
.+.|+|+|.+.++.|-...-... ..+.+..+++.+.+++||++.-|-.+-.|.+ +|-++|||+|++..|+++..
T Consensus 31 ~~~Gv~gi~v~GstGE~~~Ls~~Er~~l~~~~~~~~~g~~pvi~gv~~~~t~~ai~~a~~A~~~Gad~v~v~pP~y~~~- 109 (294)
T TIGR02313 31 IEGGSHAISVGGTSGEPGSLTLEERKQAIENAIDQIAGRIPFAPGTGALNHDETLELTKFAEEAGADAAMVIVPYYNKP- 109 (294)
T ss_pred HHcCCCEEEECccCcccccCCHHHHHHHHHHHHHHhCCCCcEEEECCcchHHHHHHHHHHHHHcCCCEEEEcCccCCCC-
Confidence 46799999998876643221211 3345666666677789999766666666664 34558999999999987652
Q ss_pred hcCHHHHHHHHHHHHHH
Q 017781 314 AEGEKGVRRVLEMLREE 330 (366)
Q Consensus 314 ~~G~~gv~~~~~~l~~e 330 (366)
.++++.+++..+.+.
T Consensus 110 --~~~~l~~~f~~ia~a 124 (294)
T TIGR02313 110 --NQEALYDHFAEVADA 124 (294)
T ss_pred --CHHHHHHHHHHHHHh
Confidence 456666666555543
|
This model represents a subset of the DapA (dihydrodipicolinate synthase) family which has apparently evolved a separate function. The product of DapA, dihydrodipicolinate, results from the non-enzymatic cyclization and dehydration of 6-amino-2,4-dihydroxyhept-2-ene-1,7-dioic acid, which is different from the substrate of this reaction only in the presence of the amino group. In the absence of this amino group, and running the reaction in the opposite direction, the reaction corresponds to the HpaI aldolase component of the 4-hydroxyphenylacetic acid catabolism pathway (see TIGR02311). At present, this variant of DapA is found only in Oceanobacillus iheyensis HTE831 and Thermus thermophilus HB27. In both of these cases, one or more other DapA genes can be found and the one identified by this model is part of an operon for 4-hydroxyphenylacetic acid catabolism. |
| >PRK08673 3-deoxy-7-phosphoheptulonate synthase; Reviewed | Back alignment and domain information |
|---|
Probab=95.20 E-value=0.68 Score=45.44 Aligned_cols=123 Identities=22% Similarity=0.345 Sum_probs=72.5
Q ss_pred HHHHHHHHHhcCCCEEEEecc--CHHH--------HHcCCcEEEEcCCCccCCCC-Cc--chHHHHHHHHHHcCCCceEE
Q 017781 214 WKDVKWLQTITKLPILVKGVL--TAED--------VQAGAAGIIVSNHGARQLDY-VP--ATIMALEEVVKATQGRIPVF 280 (366)
Q Consensus 214 ~~~i~~lr~~~~~pv~vK~v~--~~~d--------~~aGad~I~vs~~gg~~~~~-~~--~~~~~l~~i~~~~~~~i~vi 280 (366)
...++++-+ +++||++|-.+ +.++ ...|-+-+++.-.|.+.... .. ..+..++.+++.. .+|||
T Consensus 190 ~~LL~~va~-~~kPViLk~G~~~ti~E~l~A~e~i~~~GN~~viL~erG~~tf~~~~~~~ldl~ai~~lk~~~--~lPVi 266 (335)
T PRK08673 190 FDLLKEVGK-TNKPVLLKRGMSATIEEWLMAAEYILAEGNPNVILCERGIRTFETATRNTLDLSAVPVIKKLT--HLPVI 266 (335)
T ss_pred HHHHHHHHc-CCCcEEEeCCCCCCHHHHHHHHHHHHHcCCCeEEEEECCCCCCCCcChhhhhHHHHHHHHHhc--CCCEE
Confidence 344555544 58999999653 5666 66777767665555544421 12 2455677776655 68999
Q ss_pred EecCCCCH------HHHHHHHHhCcCEEEecHHHHHHh-hhcCHHHH-HHHHHHHHHHHHHHHHHcC
Q 017781 281 LDGGVRRG------TDVFKALALGASGIFIGRPVVYSL-AAEGEKGV-RRVLEMLREEFELAMALSG 339 (366)
Q Consensus 281 ~~GGI~~~------~dv~kalalGAd~V~igr~~l~~l-~~~G~~gv-~~~~~~l~~el~~~m~~~G 339 (366)
++..=..| .-...|+++|||+++|-.-+--.- .++|+..+ -+-+..|.++++..-..+|
T Consensus 267 ~d~sH~~G~~~~v~~~a~AAvA~GAdGliIE~H~~pd~alsD~~~sl~p~e~~~lv~~i~~i~~~~g 333 (335)
T PRK08673 267 VDPSHATGKRDLVEPLALAAVAAGADGLIVEVHPDPEKALSDGPQSLTPEEFEELMKKLRAIAEALG 333 (335)
T ss_pred EeCCCCCccccchHHHHHHHHHhCCCEEEEEecCCcccCCCcchhcCCHHHHHHHHHHHHHHHHHhC
Confidence 87554444 455678899999999987542211 13343221 1234455555665555554
|
|
| >PRK12290 thiE thiamine-phosphate pyrophosphorylase; Reviewed | Back alignment and domain information |
|---|
Probab=95.18 E-value=0.3 Score=49.35 Aligned_cols=92 Identities=16% Similarity=0.142 Sum_probs=61.1
Q ss_pred HHHHHhcCCCEEEEec-cCHHH----HHcCCcEEEEcCCCccC---CCCCcchHHHHHHHHHHcC-------CCceEEEe
Q 017781 218 KWLQTITKLPILVKGV-LTAED----VQAGAAGIIVSNHGARQ---LDYVPATIMALEEVVKATQ-------GRIPVFLD 282 (366)
Q Consensus 218 ~~lr~~~~~pv~vK~v-~~~~d----~~aGad~I~vs~~gg~~---~~~~~~~~~~l~~i~~~~~-------~~i~vi~~ 282 (366)
..+|+..+--.++... -+.++ .+.|+|+|.++--.-+. ....+-.++.|.++++.+. ..+||++-
T Consensus 291 ~~aR~ilg~~~iIGvStHs~eEl~~A~~~gaDYI~lGPIFpT~TK~~~~~p~Gl~~L~~~~~l~~~~~~~~~~~iPVVAI 370 (437)
T PRK12290 291 ANLAQLTDAGIRLGLSTHGYYELLRIVQIQPSYIALGHIFPTTTKQMPSKPQGLVRLALYQKLIDTIPYQGQTGFPTVAI 370 (437)
T ss_pred hhhhhhcCCCCEEEEecCCHHHHHHHhhcCCCEEEECCccCCCCCCCCCCCCCHHHHHHHHHHhhhccccccCCCCEEEE
Confidence 3444443322334332 35555 77899999886432221 1223335666766665542 26999999
Q ss_pred cCCCCHHHHHHHHHhCcCEEEecHHHHH
Q 017781 283 GGVRRGTDVFKALALGASGIFIGRPVVY 310 (366)
Q Consensus 283 GGI~~~~dv~kalalGAd~V~igr~~l~ 310 (366)
||| +.+++...++.||++|.+-|.++.
T Consensus 371 GGI-~~~Ni~~vl~aGa~GVAVVSAI~~ 397 (437)
T PRK12290 371 GGI-DQSNAEQVWQCGVSSLAVVRAITL 397 (437)
T ss_pred CCc-CHHHHHHHHHcCCCEEEEehHhhc
Confidence 999 899999999999999999999874
|
|
| >PRK03620 5-dehydro-4-deoxyglucarate dehydratase; Provisional | Back alignment and domain information |
|---|
Probab=95.17 E-value=0.1 Score=50.35 Aligned_cols=88 Identities=20% Similarity=0.331 Sum_probs=58.7
Q ss_pred HHcCCcEEEEcCCCccCCCCCcc-hHHHHHHHHHHcCCCceEEEecCCCCHHHHHHH----HHhCcCEEEecHHHHHHhh
Q 017781 239 VQAGAAGIIVSNHGARQLDYVPA-TIMALEEVVKATQGRIPVFLDGGVRRGTDVFKA----LALGASGIFIGRPVVYSLA 313 (366)
Q Consensus 239 ~~aGad~I~vs~~gg~~~~~~~~-~~~~l~~i~~~~~~~i~vi~~GGI~~~~dv~ka----lalGAd~V~igr~~l~~l~ 313 (366)
.+.|+|+|.+.++.|-...-... ..+.+..+++.+.+++|||+.-|- +-.+.++. -.+|||+|++-.|+++..
T Consensus 38 ~~~Gv~Gi~~~GstGE~~~Lt~eEr~~~~~~~~~~~~~~~pvi~gv~~-~t~~~i~~~~~a~~~Gadav~~~pP~y~~~- 115 (303)
T PRK03620 38 APYGAAALFAAGGTGEFFSLTPDEYSQVVRAAVETTAGRVPVIAGAGG-GTAQAIEYAQAAERAGADGILLLPPYLTEA- 115 (303)
T ss_pred HHcCCCEEEECcCCcCcccCCHHHHHHHHHHHHHHhCCCCcEEEecCC-CHHHHHHHHHHHHHhCCCEEEECCCCCCCC-
Confidence 46799999998876643222222 234566667777778999986664 55666543 347999999999987642
Q ss_pred hcCHHHHHHHHHHHHHH
Q 017781 314 AEGEKGVRRVLEMLREE 330 (366)
Q Consensus 314 ~~G~~gv~~~~~~l~~e 330 (366)
.++++.+++..+.+.
T Consensus 116 --~~~~i~~~f~~va~~ 130 (303)
T PRK03620 116 --PQEGLAAHVEAVCKS 130 (303)
T ss_pred --CHHHHHHHHHHHHHh
Confidence 456666666665543
|
|
| >TIGR02129 hisA_euk phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase, eukaryotic type | Back alignment and domain information |
|---|
Probab=95.13 E-value=0.041 Score=51.75 Aligned_cols=47 Identities=19% Similarity=0.230 Sum_probs=38.9
Q ss_pred chHHHHHHHHHHcCCCceEEEecCCCCHHHHHHHHHh--CcCEEEecHHHH
Q 017781 261 ATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALAL--GASGIFIGRPVV 309 (366)
Q Consensus 261 ~~~~~l~~i~~~~~~~i~vi~~GGI~~~~dv~kalal--GAd~V~igr~~l 309 (366)
+.++.+.++++.+ ++|||++||+.+.+|+.+.-.+ |...+.+|+++.
T Consensus 188 ~dlel~~~l~~~~--~ipVIASGGv~s~eDi~~l~~~~~g~~~aIvG~Alf 236 (253)
T TIGR02129 188 IDEELVSKLGEWS--PIPITYAGGAKSIDDLDLVDELSKGKVDLTIGSALD 236 (253)
T ss_pred CCHHHHHHHHhhC--CCCEEEECCCCCHHHHHHHHHhcCCCCcEEeeehHH
Confidence 5788888888887 8999999999999999988555 555588888764
|
This enzyme acts in the biosynthesis of histidine and has been characterized in S. cerevisiae and Arabidopsis where it complements the E. coli HisA gene. In eukaryotes the gene is known as HIS6. In bacteria, this gene is found in Fibrobacter succinogenes, presumably due to lateral gene transfer from plants in the rumen gut. |
| >PRK01130 N-acetylmannosamine-6-phosphate 2-epimerase; Provisional | Back alignment and domain information |
|---|
Probab=95.13 E-value=0.87 Score=41.67 Aligned_cols=87 Identities=16% Similarity=0.085 Sum_probs=55.0
Q ss_pred HHHHHHHHHhcCCCEEEE---e-----c---cCHHH----HHcCCcEEEEcCCCccCCCCCcchHHHHHHHHHHcCCCce
Q 017781 214 WKDVKWLQTITKLPILVK---G-----V---LTAED----VQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIP 278 (366)
Q Consensus 214 ~~~i~~lr~~~~~pv~vK---~-----v---~~~~d----~~aGad~I~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~i~ 278 (366)
++.++.+|+.+++|++.. . + .+.++ .++|+|.|++...-.... .+....+.+..+++. ..++
T Consensus 45 ~~~i~~i~~~~~~Pil~~~~~d~~~~~~~~~~~~~~v~~a~~aGad~I~~d~~~~~~p-~~~~~~~~i~~~~~~--~~i~ 121 (221)
T PRK01130 45 VEDIKAIRAVVDVPIIGIIKRDYPDSEVYITPTLKEVDALAAAGADIIALDATLRPRP-DGETLAELVKRIKEY--PGQL 121 (221)
T ss_pred HHHHHHHHHhCCCCEEEEEecCCCCCCceECCCHHHHHHHHHcCCCEEEEeCCCCCCC-CCCCHHHHHHHHHhC--CCCe
Confidence 467788888888898622 1 1 12222 899999888754221100 011223445555442 3677
Q ss_pred EEEecCCCCHHHHHHHHHhCcCEEEec
Q 017781 279 VFLDGGVRRGTDVFKALALGASGIFIG 305 (366)
Q Consensus 279 vi~~GGI~~~~dv~kalalGAd~V~ig 305 (366)
++. ++.+.+++.++..+|+|.+.++
T Consensus 122 vi~--~v~t~ee~~~a~~~G~d~i~~~ 146 (221)
T PRK01130 122 LMA--DCSTLEEGLAAQKLGFDFIGTT 146 (221)
T ss_pred EEE--eCCCHHHHHHHHHcCCCEEEcC
Confidence 775 5789999999999999999774
|
|
| >PLN02591 tryptophan synthase | Back alignment and domain information |
|---|
Probab=95.10 E-value=0.11 Score=48.81 Aligned_cols=36 Identities=31% Similarity=0.472 Sum_probs=30.1
Q ss_pred HHHHHHHHhcCCCEEEE-eccCHHH----HHcCCcEEEEcC
Q 017781 215 KDVKWLQTITKLPILVK-GVLTAED----VQAGAAGIIVSN 250 (366)
Q Consensus 215 ~~i~~lr~~~~~pv~vK-~v~~~~d----~~aGad~I~vs~ 250 (366)
+.++++|+.+++||++. |+.++++ .+.|||+++|..
T Consensus 179 ~~i~~vk~~~~~Pv~vGFGI~~~e~v~~~~~~GADGvIVGS 219 (250)
T PLN02591 179 SLLQELKEVTDKPVAVGFGISKPEHAKQIAGWGADGVIVGS 219 (250)
T ss_pred HHHHHHHhcCCCceEEeCCCCCHHHHHHHHhcCCCEEEECH
Confidence 45999999999999998 4566887 889999999854
|
|
| >PRK06552 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional | Back alignment and domain information |
|---|
Probab=95.10 E-value=0.14 Score=47.02 Aligned_cols=77 Identities=25% Similarity=0.194 Sum_probs=54.6
Q ss_pred CHHHHHHHHHhcC----CCEEEEeccCHHH----HHcCCcEEEEcCCCccCCCCCcchHHHHHHHHHHcCCCceEEEecC
Q 017781 213 SWKDVKWLQTITK----LPILVKGVLTAED----VQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGG 284 (366)
Q Consensus 213 ~~~~i~~lr~~~~----~pv~vK~v~~~~d----~~aGad~I~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~i~vi~~GG 284 (366)
..+.|+.+++.++ +.|.+..|++.++ .++|+++|+ |-+ ...+++..+. .. ++|++- |
T Consensus 51 a~~~i~~l~~~~~~~p~~~vGaGTV~~~~~~~~a~~aGA~Fiv-sP~---------~~~~v~~~~~-~~--~i~~iP--G 115 (213)
T PRK06552 51 ASEVIKELVELYKDDPEVLIGAGTVLDAVTARLAILAGAQFIV-SPS---------FNRETAKICN-LY--QIPYLP--G 115 (213)
T ss_pred HHHHHHHHHHHcCCCCCeEEeeeeCCCHHHHHHHHHcCCCEEE-CCC---------CCHHHHHHHH-Hc--CCCEEC--C
Confidence 3466999998873 4455556788887 999999996 221 1223333322 22 566554 8
Q ss_pred CCCHHHHHHHHHhCcCEEEe
Q 017781 285 VRRGTDVFKALALGASGIFI 304 (366)
Q Consensus 285 I~~~~dv~kalalGAd~V~i 304 (366)
+.|+.++.+|+.+|||.|.+
T Consensus 116 ~~T~~E~~~A~~~Gad~vkl 135 (213)
T PRK06552 116 CMTVTEIVTALEAGSEIVKL 135 (213)
T ss_pred cCCHHHHHHHHHcCCCEEEE
Confidence 99999999999999999998
|
|
| >PRK08999 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=95.08 E-value=0.12 Score=49.82 Aligned_cols=73 Identities=22% Similarity=0.247 Sum_probs=53.8
Q ss_pred ccCHHH----HHcCCcEEEEcCCCccC-C-CCCcchHHHHHHHHHHcCCCceEEEecCCCCHHHHHHHHHhCcCEEEecH
Q 017781 233 VLTAED----VQAGAAGIIVSNHGARQ-L-DYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFIGR 306 (366)
Q Consensus 233 v~~~~d----~~aGad~I~vs~~gg~~-~-~~~~~~~~~l~~i~~~~~~~i~vi~~GGI~~~~dv~kalalGAd~V~igr 306 (366)
+-+.++ .+.|+|+|.++--.-+. . +..+..++.+.++++.. ++||++-||| +.+++...+++||++|.+-+
T Consensus 233 ~h~~~~~~~a~~~~~dyi~~gpvf~t~tk~~~~~~g~~~~~~~~~~~--~~Pv~AiGGI-~~~~~~~~~~~g~~gva~i~ 309 (312)
T PRK08999 233 CHDAEELARAQRLGVDFAVLSPVQPTASHPGAAPLGWEGFAALIAGV--PLPVYALGGL-GPGDLEEAREHGAQGIAGIR 309 (312)
T ss_pred cCCHHHHHHHHhcCCCEEEECCCcCCCCCCCCCCCCHHHHHHHHHhC--CCCEEEECCC-CHHHHHHHHHhCCCEEEEEE
Confidence 345555 57799999987543221 1 12223467788877766 7999999999 99999999999999998866
Q ss_pred HH
Q 017781 307 PV 308 (366)
Q Consensus 307 ~~ 308 (366)
.|
T Consensus 310 ~~ 311 (312)
T PRK08999 310 GL 311 (312)
T ss_pred Ee
Confidence 43
|
|
| >TIGR01305 GMP_reduct_1 guanosine monophosphate reductase, eukaryotic | Back alignment and domain information |
|---|
Probab=95.08 E-value=0.17 Score=49.39 Aligned_cols=91 Identities=15% Similarity=0.117 Sum_probs=60.3
Q ss_pred CCCCCHHH-HHHHHHh---cCCCEEEEeccCHHH-------HHc--CCcEEEEcCCCccCCCCCcchHHHHHHHHHHcCC
Q 017781 209 DRSLSWKD-VKWLQTI---TKLPILVKGVLTAED-------VQA--GAAGIIVSNHGARQLDYVPATIMALEEVVKATQG 275 (366)
Q Consensus 209 d~~~~~~~-i~~lr~~---~~~pv~vK~v~~~~d-------~~a--Gad~I~vs~~gg~~~~~~~~~~~~l~~i~~~~~~ 275 (366)
+..++.+. .+++++. ...-+.+-...+.+| .++ |+|.|++.-..|+ ....++.++.+++..+
T Consensus 75 Hk~~~~e~~~~~v~~~~~~~~~~~~vsvG~~~~d~er~~~L~~a~~~~d~iviD~AhGh----s~~~i~~ik~ir~~~p- 149 (343)
T TIGR01305 75 HKHYSVDEWKAFATNSSPDCLQNVAVSSGSSDNDLEKMTSILEAVPQLKFICLDVANGY----SEHFVEFVKLVREAFP- 149 (343)
T ss_pred eeCCCHHHHHHHHHhhcccccceEEEEeccCHHHHHHHHHHHhcCCCCCEEEEECCCCc----HHHHHHHHHHHHhhCC-
Confidence 34455554 5555542 223344433344444 666 5999999865443 2346678888887763
Q ss_pred CceEEEecCCCCHHHHHHHHHhCcCEEEec
Q 017781 276 RIPVFLDGGVRRGTDVFKALALGASGIFIG 305 (366)
Q Consensus 276 ~i~vi~~GGI~~~~dv~kalalGAd~V~ig 305 (366)
. +.+..|-|-|++++..++.+|||+|-+|
T Consensus 150 ~-~~viaGNV~T~e~a~~Li~aGAD~ikVg 178 (343)
T TIGR01305 150 E-HTIMAGNVVTGEMVEELILSGADIVKVG 178 (343)
T ss_pred C-CeEEEecccCHHHHHHHHHcCCCEEEEc
Confidence 2 4555588999999999999999999777
|
A deep split separates two families of GMP reductase. This family includes both eukaryotic and some proteobacterial sequences, while the other family contains other bacterial sequences. |
| >PRK03512 thiamine-phosphate pyrophosphorylase; Provisional | Back alignment and domain information |
|---|
Probab=95.02 E-value=0.41 Score=43.84 Aligned_cols=76 Identities=17% Similarity=0.162 Sum_probs=54.2
Q ss_pred ccCHHH----HHcCCcEEEEcCCCccC-CC--CCcchHHHHHHHHHHcCCCceEEEecCCCCHHHHHHHHHhCcCEEEec
Q 017781 233 VLTAED----VQAGAAGIIVSNHGARQ-LD--YVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFIG 305 (366)
Q Consensus 233 v~~~~d----~~aGad~I~vs~~gg~~-~~--~~~~~~~~l~~i~~~~~~~i~vi~~GGI~~~~dv~kalalGAd~V~ig 305 (366)
+-+.++ .+.|+|+|.++--..+. .. ..+..++.+.++.+.. .++||++-|||. .+++.+.++.||++|.+-
T Consensus 109 ~H~~~e~~~A~~~gaDYi~lgpvf~T~tK~~~~~~~G~~~l~~~~~~~-~~~PV~AiGGI~-~~ni~~l~~~Ga~GiAvi 186 (211)
T PRK03512 109 THDDMEIDVALAARPSYIALGHVFPTQTKQMPSAPQGLAQLARHVERL-ADYPTVAIGGIS-LERAPAVLATGVGSIAVV 186 (211)
T ss_pred CCCHHHHHHHhhcCCCEEEECCccCCCCCCCCCCCCCHHHHHHHHHhc-CCCCEEEECCCC-HHHHHHHHHcCCCEEEEh
Confidence 345555 56799999987533221 11 1223456666666542 169999999995 899999999999999999
Q ss_pred HHHHH
Q 017781 306 RPVVY 310 (366)
Q Consensus 306 r~~l~ 310 (366)
+.++.
T Consensus 187 sai~~ 191 (211)
T PRK03512 187 SAITQ 191 (211)
T ss_pred hHhhC
Confidence 98863
|
|
| >cd00951 KDGDH 5-dehydro-4-deoxyglucarate dehydratase, also called 5-keto-4-deoxy-glucarate dehydratase (KDGDH), which is member of dihydrodipicolinate synthase (DHDPS) family that comprises several pyruvate-dependent class I aldolases | Back alignment and domain information |
|---|
Probab=95.01 E-value=0.12 Score=49.48 Aligned_cols=87 Identities=21% Similarity=0.342 Sum_probs=58.4
Q ss_pred HHcCCcEEEEcCCCccCCCCCcc-hHHHHHHHHHHcCCCceEEEecCCCCHHHHHHH----HHhCcCEEEecHHHHHHhh
Q 017781 239 VQAGAAGIIVSNHGARQLDYVPA-TIMALEEVVKATQGRIPVFLDGGVRRGTDVFKA----LALGASGIFIGRPVVYSLA 313 (366)
Q Consensus 239 ~~aGad~I~vs~~gg~~~~~~~~-~~~~l~~i~~~~~~~i~vi~~GGI~~~~dv~ka----lalGAd~V~igr~~l~~l~ 313 (366)
.+.|+|+|.+.++.|-...-... ..+.+..+++.+.+++|||+.-|- +-.+.++. -.+|||++++-.|+++..
T Consensus 31 ~~~Gv~gi~v~GstGE~~~Ls~eEr~~l~~~~~~~~~~~~pvi~gv~~-~t~~~i~~a~~a~~~Gad~v~~~pP~y~~~- 108 (289)
T cd00951 31 LSYGAAALFAAGGTGEFFSLTPDEYAQVVRAAVEETAGRVPVLAGAGY-GTATAIAYAQAAEKAGADGILLLPPYLTEA- 108 (289)
T ss_pred HHcCCCEEEECcCCcCcccCCHHHHHHHHHHHHHHhCCCCCEEEecCC-CHHHHHHHHHHHHHhCCCEEEECCCCCCCC-
Confidence 56799999998876643322222 234556666777778999997775 66666643 347999999999987642
Q ss_pred hcCHHHHHHHHHHHHH
Q 017781 314 AEGEKGVRRVLEMLRE 329 (366)
Q Consensus 314 ~~G~~gv~~~~~~l~~ 329 (366)
.++++.+++..+.+
T Consensus 109 --~~~~i~~~f~~v~~ 122 (289)
T cd00951 109 --PQEGLYAHVEAVCK 122 (289)
T ss_pred --CHHHHHHHHHHHHh
Confidence 45666666655544
|
The enzyme is involved in glucarate metabolism, and its mechanism presumbly involves a Schiff-base intermediate similar to members of DHDPS family. While in the case of Pseudomonas sp. 5-dehydro-4-deoxy-D-glucarate is degraded by KDGDH to 2,5-dioxopentanoate, in certain species of Enterobacteriaceae it is degraded instead to pyruvate and glycerate. |
| >PTZ00314 inosine-5'-monophosphate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=95.00 E-value=0.14 Score=52.95 Aligned_cols=245 Identities=19% Similarity=0.265 Sum_probs=134.1
Q ss_pred cccceeeecccc-CCCCCCccceeEc-CcccCCceEecccccccccCChhhHHHHHHHHHcCCceecCCCCCCCHHHHhc
Q 017781 42 AFSRILFRPRIL-IDVSKIDMNTTVL-GFKISMPIMIAPTAMQKMAHPEGEYATARAASAAGTIMTLSSWSTSSVEEVAS 119 (366)
Q Consensus 42 ~f~~i~l~pr~l-~~~~~vd~st~l~-g~~l~~Pi~iApm~~~~l~~~~~e~~la~aa~~~G~~~~vs~~~~~~~e~i~~ 119 (366)
.|||+.|+|... ...+++|++|.+- +..+..|++.|||...+ |..||.+.++.|...+++. ++++|+..+
T Consensus 19 t~ddv~l~p~~~~~~~~~v~~~t~l~~~~~l~~Pii~a~M~~vt------~~~ma~a~a~~GglGvi~~--~~~~e~~~~ 90 (495)
T PTZ00314 19 TYDDVILLPGYIDFSRDDVDLSTRLTRNIRLKIPIVSSPMDTVT------EHKMAIAMALMGGIGVIHN--NCSIEEQVE 90 (495)
T ss_pred CccceEecccccccccccccccccccCCcccCCceeecCccccc------cHHHHHHHHHCCCeEEecC--CCCHHHHHH
Confidence 499999999865 3557899998876 46889999999996543 7899999999999999953 567776543
Q ss_pred cCC------Cc---eEEEeeecCCHHHHHHHHHHHHHcCCCEEEEecCCC----CCc-chhHHHhhhcCCCCcccccccc
Q 017781 120 TGP------GI---RFFQLYVYKDRNVVAQLVRRAERAGFKAIALTVDTP----RLG-RREADIKNRFTLPPFLTLKNFQ 185 (366)
Q Consensus 120 ~~~------~~---~~~Qly~~~d~~~~~~~l~ra~~~G~~ai~vtvd~p----~~g-~r~~d~~~~~~~p~~~~~~~~~ 185 (366)
... .. -.+-+. ......+.++...+.++..+.|+-+-. ..| -..+|++..- .....+..+.
T Consensus 91 ~v~kvk~~e~g~i~dpvtv~---pd~tv~eA~~lm~~~~~s~vpVvd~~~~~gkLvGIVt~~DL~~~~--~~~~~V~diM 165 (495)
T PTZ00314 91 EVRKVKRFENGFIMDPYVLS---PNHTVADVLEIKEKKGFSSILITVDGKVGGKLLGIVTSRDIDFVK--DKSTPVSEVM 165 (495)
T ss_pred HHhhccccccccccCCeecC---CCCCHHHHHHHHHHcCCcEEEEEeCCccCCeEEEEEEHHHHhhcc--cCCCCHHHhh
Confidence 211 00 011122 222345556666778888777753310 011 1223332100 0000000000
Q ss_pred cc--ccCCCcc-ccchhhHHHhhhc-------cC--C----CCCHHHHHHHHHh------cCCCEEEEec--cCHHH---
Q 017781 186 GL--DLGKMDE-ANDSGLAAYVAGQ-------ID--R----SLSWKDVKWLQTI------TKLPILVKGV--LTAED--- 238 (366)
Q Consensus 186 ~~--~~~~~~~-~~~~~~~~~~~~~-------~d--~----~~~~~~i~~lr~~------~~~pv~vK~v--~~~~d--- 238 (366)
.- ....... .........+... .+ . -.+.+++...+.. -...+.|-.. .++++
T Consensus 166 t~~~~lvtv~~~~sl~eAl~lm~e~~i~~LPVVd~~g~liGIIT~~DIl~~~~~p~a~~D~~GrL~Vgaavg~~~~~~~~ 245 (495)
T PTZ00314 166 TPREKLVVGNTPISLEEANEVLRESRKGKLPIVNDNGELVALVSRSDLKKNRGYPNASLDSNGQLLVGAAISTRPEDIER 245 (495)
T ss_pred CCcCCceEeCCCCCHHHHHHHHHHcCCCeEEEEcCCCcEEEEEEehHhhhcccCchhhhccCCCEEEEEEECCCHHHHHH
Confidence 00 0000000 0000000000000 00 0 0122222222110 0123344322 23332
Q ss_pred ----HHcCCcEEEEcCCCccCCCCCcchHHHHHHHHHHcCCCceEEEecCCCCHHHHHHHHHhCcCEEEec
Q 017781 239 ----VQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFIG 305 (366)
Q Consensus 239 ----~~aGad~I~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~i~vi~~GGI~~~~dv~kalalGAd~V~ig 305 (366)
.++|+|.|++....|+. ...++.+.++++..+ +++|++ |.|.|.+++..++.+|||++-+|
T Consensus 246 ~~~l~~ag~d~i~id~a~G~s----~~~~~~i~~ik~~~~-~~~v~a-G~V~t~~~a~~~~~aGad~I~vg 310 (495)
T PTZ00314 246 AAALIEAGVDVLVVDSSQGNS----IYQIDMIKKLKSNYP-HVDIIA-GNVVTADQAKNLIDAGADGLRIG 310 (495)
T ss_pred HHHHHHCCCCEEEEecCCCCc----hHHHHHHHHHHhhCC-CceEEE-CCcCCHHHHHHHHHcCCCEEEEC
Confidence 99999999988644432 234678888887753 688887 99999999999999999999754
|
|
| >PLN02274 inosine-5'-monophosphate dehydrogenase | Back alignment and domain information |
|---|
Probab=94.98 E-value=0.076 Score=55.00 Aligned_cols=246 Identities=17% Similarity=0.213 Sum_probs=131.9
Q ss_pred hcccceeeeccccC-CCCCCccceeEc-CcccCCceEecccccccccCChhhHHHHHHHHHcCCceecCCCCCCCHHHHh
Q 017781 41 NAFSRILFRPRILI-DVSKIDMNTTVL-GFKISMPIMIAPTAMQKMAHPEGEYATARAASAAGTIMTLSSWSTSSVEEVA 118 (366)
Q Consensus 41 ~~f~~i~l~pr~l~-~~~~vd~st~l~-g~~l~~Pi~iApm~~~~l~~~~~e~~la~aa~~~G~~~~vs~~~~~~~e~i~ 118 (366)
-.|||+.|+|.... ..+++|++|.+. ...+..||+.|||...+ +..+|.+.++.|...+++. +.+.|+..
T Consensus 22 ltfddv~l~p~~~~~~~~~~~~~t~lt~~~~~~~Pivsa~M~~vt------~~~lA~Ama~aGGiGfI~~--~as~E~q~ 93 (505)
T PLN02274 22 YTYDDVIFHPGYIDFPADAVDLSTRLSRNIPLSIPCVSSPMDTVT------ESDMAIAMAALGGIGIVHY--NNTAEEQA 93 (505)
T ss_pred CCccceEecccccCcCCcccccccccccccCcCCCEeccCCcccc------hHHHHHHHHhCCCeEEEcC--CCCHHHHH
Confidence 45999999998653 457889988775 46788999999996544 6789999999998777763 44555443
Q ss_pred c----cC--CC---ceEEEeeecCCHHHHHHHHHHHHHcCCCEEEEecCC----CCCc-chhHHHhhhcCCCCccccccc
Q 017781 119 S----TG--PG---IRFFQLYVYKDRNVVAQLVRRAERAGFKAIALTVDT----PRLG-RREADIKNRFTLPPFLTLKNF 184 (366)
Q Consensus 119 ~----~~--~~---~~~~Qly~~~d~~~~~~~l~ra~~~G~~ai~vtvd~----p~~g-~r~~d~~~~~~~p~~~~~~~~ 184 (366)
+ .. .. +..+.+ .......+.++...+.++..+.|+-+. -..| -..+|++..-. + ......+
T Consensus 94 ~~Irkvk~~~~gmi~dpvtV---~pd~tV~dA~~lm~~~~~~~lpVvD~~~~~GklvGIVT~~DL~~v~~-~-~~~V~eI 168 (505)
T PLN02274 94 AIVRKAKSRRVGFVSDPVVK---SPSSTISSLDELKASRGFSSVCVTETGTMGSKLLGYVTKRDWDFVND-R-ETKLSEV 168 (505)
T ss_pred HHHHHhhcccccccCCCeee---CCCCcHHHHHHHHHhcCCceEEEEeCCCcCCeEEEEEEHHHHhhccc-c-CCcHHHH
Confidence 2 11 10 011112 222334455666677788877765321 0001 11223221000 0 0000000
Q ss_pred cccc--cCCCcc-ccchhhHHHhhhc-------cC------CCCCHHHHHHHHHhc---------CCCEEEEec--cCHH
Q 017781 185 QGLD--LGKMDE-ANDSGLAAYVAGQ-------ID------RSLSWKDVKWLQTIT---------KLPILVKGV--LTAE 237 (366)
Q Consensus 185 ~~~~--~~~~~~-~~~~~~~~~~~~~-------~d------~~~~~~~i~~lr~~~---------~~pv~vK~v--~~~~ 237 (366)
..-. ...+.. .........+... .| .-.+.+++....+.- +..+.|... .+.+
T Consensus 169 Mt~~~~lvtv~~~~sL~eAl~~m~~~~~~~LPVVD~~g~LvGvITr~DIlk~~~~p~~~~~~~d~~~~l~vgaavg~~~~ 248 (505)
T PLN02274 169 MTSDDDLVTAPAGIDLEEAEAVLKDSKKGKLPLVNEDGELVDLVTRTDVKRVKGYPKLGKPSVGKDGKLLVGAAIGTRES 248 (505)
T ss_pred hccCCCcEEECCCCCHHHHHHHHHHcCCCEEEEEcCCCeEEEEEEHHHHHHHhhCcCccccccCCCCCEEEEEEEcCCcc
Confidence 0000 000000 0000000000000 00 012344444433321 123444422 2222
Q ss_pred H-------HHcCCcEEEEcCCCccCCCCCcchHHHHHHHHHHcCCCceEEEecCCCCHHHHHHHHHhCcCEEEec
Q 017781 238 D-------VQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFIG 305 (366)
Q Consensus 238 d-------~~aGad~I~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~i~vi~~GGI~~~~dv~kalalGAd~V~ig 305 (366)
+ .++|+|.|.++...|. ....|+.+.++++..+ +++||+ |+|.|.+++..++.+|||+|.+|
T Consensus 249 ~~~r~~~l~~ag~d~i~iD~~~g~----~~~~~~~i~~ik~~~p-~~~vi~-g~v~t~e~a~~a~~aGaD~i~vg 317 (505)
T PLN02274 249 DKERLEHLVKAGVDVVVLDSSQGD----SIYQLEMIKYIKKTYP-ELDVIG-GNVVTMYQAQNLIQAGVDGLRVG 317 (505)
T ss_pred HHHHHHHHHHcCCCEEEEeCCCCC----cHHHHHHHHHHHHhCC-CCcEEE-ecCCCHHHHHHHHHcCcCEEEEC
Confidence 2 9999999999875442 2346688888887663 455555 88999999999999999999775
|
|
| >PLN02716 nicotinate-nucleotide diphosphorylase (carboxylating) | Back alignment and domain information |
|---|
Probab=94.98 E-value=0.29 Score=47.29 Aligned_cols=91 Identities=19% Similarity=0.173 Sum_probs=62.9
Q ss_pred HHHHHHHHhcC-CCEEEE---eccCHHH----HH------cCCcEEEEcCC--CccCCCCCcchHHHHHHHHHHcCCCce
Q 017781 215 KDVKWLQTITK-LPILVK---GVLTAED----VQ------AGAAGIIVSNH--GARQLDYVPATIMALEEVVKATQGRIP 278 (366)
Q Consensus 215 ~~i~~lr~~~~-~pv~vK---~v~~~~d----~~------aGad~I~vs~~--gg~~~~~~~~~~~~l~~i~~~~~~~i~ 278 (366)
+.++.+|+..+ .+...| .+-+.++ .+ +|+|.|-+.|. .... ...+.+.+.++.+.++++.+
T Consensus 188 ~av~~~r~~~~~~~~~~kIeVEv~tleea~ea~~~~~~~~agaDiImLDnm~~~~~~---~~~~~e~l~~av~~~~~~~~ 264 (308)
T PLN02716 188 NAVQSADKYLEEKGLSMKIEVETRTLEEVKEVLEYLSDTKTSLTRVMLDNMVVPLEN---GDVDVSMLKEAVELINGRFE 264 (308)
T ss_pred HHHHHHHHhhhhcCCCeeEEEEECCHHHHHHHHHhcccccCCCCEEEeCCCcccccc---cCCCHHHHHHHHHhhCCCce
Confidence 34777777321 122223 3467776 88 99999999985 1111 11255666676666666789
Q ss_pred EEEecCCCCHHHHHHHHHhCcCEEEecHHHH
Q 017781 279 VFLDGGVRRGTDVFKALALGASGIFIGRPVV 309 (366)
Q Consensus 279 vi~~GGI~~~~dv~kalalGAd~V~igr~~l 309 (366)
+-++||| +.+.+.++..+|+|.+.+|.+..
T Consensus 265 lEaSGGI-t~~ni~~yA~tGVD~Is~Galth 294 (308)
T PLN02716 265 TEASGNV-TLDTVHKIGQTGVTYISSGALTH 294 (308)
T ss_pred EEEECCC-CHHHHHHHHHcCCCEEEeCcccc
Confidence 9999999 67888888889999999997654
|
|
| >TIGR01306 GMP_reduct_2 guanosine monophosphate reductase, bacterial | Back alignment and domain information |
|---|
Probab=94.95 E-value=0.23 Score=48.46 Aligned_cols=61 Identities=13% Similarity=0.128 Sum_probs=49.8
Q ss_pred HHcC--CcEEEEcCCCccCCCCCcchHHHHHHHHHHcCCCceEEEecCCCCHHHHHHHHHhCcCEEEec
Q 017781 239 VQAG--AAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFIG 305 (366)
Q Consensus 239 ~~aG--ad~I~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~i~vi~~GGI~~~~dv~kalalGAd~V~ig 305 (366)
.++| +|.|++.-..|+ ....++.++++++.. ..|.+..|.|-+++++..++.+|||+|-+|
T Consensus 103 v~a~~~~d~i~~D~ahg~----s~~~~~~i~~i~~~~--p~~~vi~GnV~t~e~a~~l~~aGad~I~V~ 165 (321)
T TIGR01306 103 AEEALTPEYITIDIAHGH----SNSVINMIKHIKTHL--PDSFVIAGNVGTPEAVRELENAGADATKVG 165 (321)
T ss_pred HhcCCCCCEEEEeCccCc----hHHHHHHHHHHHHhC--CCCEEEEecCCCHHHHHHHHHcCcCEEEEC
Confidence 7888 799998764442 235667888888877 568888899999999999999999999877
|
A deep split separates two families of GMP reductase. The other (TIGR01305) is found in eukaryotic and some proteobacterial lineages, including E. coli, while this family is found in a variety of bacterial lineages. |
| >cd00952 CHBPH_aldolase Trans-o-hydroxybenzylidenepyruvate hydratase-aldolase (HBPHA) and trans-2'-carboxybenzalpyruvate hydratase-aldolase (CBPHA) | Back alignment and domain information |
|---|
Probab=94.91 E-value=0.13 Score=49.77 Aligned_cols=103 Identities=21% Similarity=0.319 Sum_probs=65.9
Q ss_pred CCCCHHHHHHHHHhcCCCEEEEeccCHHHHHcCCcEEEEcCCCccCCCCCcc-hHHHHHHHHHHcCCCceEEEecCCCCH
Q 017781 210 RSLSWKDVKWLQTITKLPILVKGVLTAEDVQAGAAGIIVSNHGARQLDYVPA-TIMALEEVVKATQGRIPVFLDGGVRRG 288 (366)
Q Consensus 210 ~~~~~~~i~~lr~~~~~pv~vK~v~~~~d~~aGad~I~vs~~gg~~~~~~~~-~~~~l~~i~~~~~~~i~vi~~GGI~~~ 288 (366)
...+++.++++.+.. .+.|+++|.+.++.|-...-... ..+.+..+++.+.+++|||+.-|=.+-
T Consensus 24 g~iD~~~l~~lv~~l--------------i~~Gv~Gi~v~GstGE~~~Lt~eEr~~v~~~~~~~~~grvpvi~Gv~~~~t 89 (309)
T cd00952 24 DTVDLDETARLVERL--------------IAAGVDGILTMGTFGECATLTWEEKQAFVATVVETVAGRVPVFVGATTLNT 89 (309)
T ss_pred CCcCHHHHHHHHHHH--------------HHcCCCEEEECcccccchhCCHHHHHHHHHHHHHHhCCCCCEEEEeccCCH
Confidence 345666665555432 56899999998876643222222 234555666677778999986665566
Q ss_pred HHHHHHH----HhCcCEEEecHHHHHHhhhcCHHHHHHHHHHHHH
Q 017781 289 TDVFKAL----ALGASGIFIGRPVVYSLAAEGEKGVRRVLEMLRE 329 (366)
Q Consensus 289 ~dv~kal----alGAd~V~igr~~l~~l~~~G~~gv~~~~~~l~~ 329 (366)
.|+++.. .+|||+|++-.|+++.. .++++.++++.+.+
T Consensus 90 ~~ai~~a~~A~~~Gad~vlv~~P~y~~~---~~~~l~~yf~~va~ 131 (309)
T cd00952 90 RDTIARTRALLDLGADGTMLGRPMWLPL---DVDTAVQFYRDVAE 131 (309)
T ss_pred HHHHHHHHHHHHhCCCEEEECCCcCCCC---CHHHHHHHHHHHHH
Confidence 6666433 47999999999987642 35665555555444
|
HBPHA catalyzes HBP to salicyaldehyde and pyruvate. This reaction is part of the degradative pathways for naphthalene and naphthalenesulfonates by bacteria. CBPHA is homologous to HBPHA and catalyzes the cleavage of CBP to 2-carboxylbenzaldehyde and pyruvate during the degradation of phenanthrene. They are member of the DHDPS family of Schiff-base-dependent class I aldolases. |
| >PRK09250 fructose-bisphosphate aldolase; Provisional | Back alignment and domain information |
|---|
Probab=94.91 E-value=0.13 Score=50.31 Aligned_cols=71 Identities=24% Similarity=0.244 Sum_probs=46.3
Q ss_pred HHcCCcEEEEcCCC---c-------cCC------CCCcchHHHHHHHHHHc-CCCceEEEecCCCCH-HHH----HHH--
Q 017781 239 VQAGAAGIIVSNHG---A-------RQL------DYVPATIMALEEVVKAT-QGRIPVFLDGGVRRG-TDV----FKA-- 294 (366)
Q Consensus 239 ~~aGad~I~vs~~g---g-------~~~------~~~~~~~~~l~~i~~~~-~~~i~vi~~GGI~~~-~dv----~ka-- 294 (366)
.+.|||.|.+--.+ + ... ...-...+.+..+.+.+ .+.+||+.+||=+.. .|+ ..+
T Consensus 227 aELGADIVKv~yp~~~~~f~~v~~~~~~~~~~~~~~~~~~~~~~~~~V~ac~ag~vpVviAGG~k~~~~e~L~~v~~a~~ 306 (348)
T PRK09250 227 ATIGADIIKQKLPTNNGGYKAINFGKTDDRVYSKLTSDHPIDLVRYQVANCYMGRRGLINSGGASKGEDDLLDAVRTAVI 306 (348)
T ss_pred HHHcCCEEEecCCCChhhHHHhhcccccccccccccccchHHHHHHHHHhhccCCceEEEeCCCCCCHHHHHHHHHHHHH
Confidence 89999999975322 1 100 00112345566666655 347999999999853 333 356
Q ss_pred -HHhCcCEEEecHHHH
Q 017781 295 -LALGASGIFIGRPVV 309 (366)
Q Consensus 295 -lalGAd~V~igr~~l 309 (366)
+..||.+|.+||=..
T Consensus 307 ~i~aGa~Gv~iGRNIf 322 (348)
T PRK09250 307 NKRAGGMGLIIGRKAF 322 (348)
T ss_pred hhhcCCcchhhchhhh
Confidence 778999999999654
|
|
| >cd00408 DHDPS-like Dihydrodipicolinate synthase family | Back alignment and domain information |
|---|
Probab=94.89 E-value=0.16 Score=48.23 Aligned_cols=88 Identities=22% Similarity=0.402 Sum_probs=59.1
Q ss_pred HHcCCcEEEEcCCCccCCCCCcc-hHHHHHHHHHHcCCCceEEEecCCCCHHHHHH----HHHhCcCEEEecHHHHHHhh
Q 017781 239 VQAGAAGIIVSNHGARQLDYVPA-TIMALEEVVKATQGRIPVFLDGGVRRGTDVFK----ALALGASGIFIGRPVVYSLA 313 (366)
Q Consensus 239 ~~aGad~I~vs~~gg~~~~~~~~-~~~~l~~i~~~~~~~i~vi~~GGI~~~~dv~k----alalGAd~V~igr~~l~~l~ 313 (366)
.+.|+|+|.+.++.|....-... ..+.+..+++.+++++||++.-|-.+-.+.++ |-.+|||+|++..|+++.
T Consensus 28 ~~~Gv~gi~~~GstGE~~~ls~~Er~~l~~~~~~~~~~~~~vi~gv~~~~~~~~i~~a~~a~~~Gad~v~v~pP~y~~-- 105 (281)
T cd00408 28 IEAGVDGLVVLGTTGEAPTLTDEERKEVIEAVVEAVAGRVPVIAGVGANSTREAIELARHAEEAGADGVLVVPPYYNK-- 105 (281)
T ss_pred HHcCCCEEEECCCCcccccCCHHHHHHHHHHHHHHhCCCCeEEEecCCccHHHHHHHHHHHHHcCCCEEEECCCcCCC--
Confidence 45699999998876643322222 33556666777777899988766666665554 334799999999998775
Q ss_pred hcCHHHHHHHHHHHHH
Q 017781 314 AEGEKGVRRVLEMLRE 329 (366)
Q Consensus 314 ~~G~~gv~~~~~~l~~ 329 (366)
..++++.+++..+.+
T Consensus 106 -~~~~~~~~~~~~ia~ 120 (281)
T cd00408 106 -PSQEGIVAHFKAVAD 120 (281)
T ss_pred -CCHHHHHHHHHHHHh
Confidence 245666666555544
|
A member of the class I aldolases, which use an active-site lysine which stablilzes a reaction intermediate via Schiff base formation, and have TIM beta/alpha barrel fold. The dihydrodipicolinate synthase family comprises several pyruvate-dependent class I aldolases that use the same catalytic step to catalyze different reactions in different pathways and includes such proteins as N-acetylneuraminate lyase, MosA protein, 5-keto-4-deoxy-glucarate dehydratase, trans-o-hydroxybenzylidenepyruvate hydratase-aldolase, trans-2'-carboxybenzalpyruvate hydratase-aldolase, and 2-keto-3-deoxy- gluconate aldolase. The family is also referred to as the N-acetylneuraminate lyase (NAL) family. |
| >cd04728 ThiG Thiazole synthase (ThiG) is the tetrameric enzyme that is involved in the formation of the thiazole moiety of thiamin pyrophosphate, an essential ubiquitous cofactor that plays an important role in carbohydrate and amino acid metabolism | Back alignment and domain information |
|---|
Probab=94.83 E-value=0.16 Score=47.38 Aligned_cols=104 Identities=20% Similarity=0.360 Sum_probs=66.0
Q ss_pred CceEEEeeecCCHH----HHHHHHHHHHHc---CCCEEEEecCCCCCcchhHHHhhhcCCCCccccccccccccCCCccc
Q 017781 123 GIRFFQLYVYKDRN----VVAQLVRRAERA---GFKAIALTVDTPRLGRREADIKNRFTLPPFLTLKNFQGLDLGKMDEA 195 (366)
Q Consensus 123 ~~~~~Qly~~~d~~----~~~~~l~ra~~~---G~~ai~vtvd~p~~g~r~~d~~~~~~~p~~~~~~~~~~~~~~~~~~~ 195 (366)
+..|+.|-+-.|+. ...+.++++++. |+..+-+..|.|...+|..++.-.+-.| +
T Consensus 90 ~~~~iKlEVi~d~~~Llpd~~~tv~aa~~L~~~Gf~vlpyc~dd~~~ar~l~~~G~~~vmP-------l----------- 151 (248)
T cd04728 90 GTDWIKLEVIGDDKTLLPDPIETLKAAEILVKEGFTVLPYCTDDPVLAKRLEDAGCAAVMP-------L----------- 151 (248)
T ss_pred CCCeEEEEEecCccccccCHHHHHHHHHHHHHCCCEEEEEeCCCHHHHHHHHHcCCCEeCC-------C-----------
Confidence 34577765433332 245566677776 9999877778887777776652111111 0
Q ss_pred cchhhHHHhhhccCCCCCHHHHHHHHHhcCCCEEEEe-ccCHHH----HHcCCcEEEEcC
Q 017781 196 NDSGLAAYVAGQIDRSLSWKDVKWLQTITKLPILVKG-VLTAED----VQAGAAGIIVSN 250 (366)
Q Consensus 196 ~~~~~~~~~~~~~d~~~~~~~i~~lr~~~~~pv~vK~-v~~~~d----~~aGad~I~vs~ 250 (366)
++.+.+ ..+-.+++.|+.+++..++||++-+ +.+++| .+.|+|++.|..
T Consensus 152 -----g~pIGs-g~Gi~~~~~I~~I~e~~~vpVI~egGI~tpeda~~AmelGAdgVlV~S 205 (248)
T cd04728 152 -----GSPIGS-GQGLLNPYNLRIIIERADVPVIVDAGIGTPSDAAQAMELGADAVLLNT 205 (248)
T ss_pred -----CcCCCC-CCCCCCHHHHHHHHHhCCCcEEEeCCCCCHHHHHHHHHcCCCEEEECh
Confidence 000111 1122357889999998889999985 578888 999999998743
|
ThiG catalyzes the formation of thiazole from 1-deoxy-D-xylulose 5-phosphate (DXP) and dehydroglycine, with the help of the sulfur carrier protein ThiS that carries the sulfur needed for thiazole assembly on its carboxy terminus (ThiS-COSH). |
| >cd04729 NanE N-acetylmannosamine-6-phosphate epimerase (NanE) converts N-acetylmannosamine-6-phosphate to N-acetylglucosamine-6-phosphate | Back alignment and domain information |
|---|
Probab=94.81 E-value=1.2 Score=40.77 Aligned_cols=86 Identities=16% Similarity=0.155 Sum_probs=53.6
Q ss_pred HHHHHHHHhcCCCEEE---Eec--------cCHHH----HHcCCcEEEEcCCCccCCCCCcchHHHHHHHHHHcCCCceE
Q 017781 215 KDVKWLQTITKLPILV---KGV--------LTAED----VQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPV 279 (366)
Q Consensus 215 ~~i~~lr~~~~~pv~v---K~v--------~~~~d----~~aGad~I~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~i~v 279 (366)
+.++++|+..++|++. |.. .+.++ .++|+|.|++.....+ ...+....+.+..+++.. ++++
T Consensus 50 ~~~~~i~~~~~iPil~~~~~~~~~~~~~ig~~~~~~~~a~~aGad~I~~~~~~~~-~p~~~~~~~~i~~~~~~g--~~~i 126 (219)
T cd04729 50 EDIRAIRARVDLPIIGLIKRDYPDSEVYITPTIEEVDALAAAGADIIALDATDRP-RPDGETLAELIKRIHEEY--NCLL 126 (219)
T ss_pred HHHHHHHHhCCCCEEEEEecCCCCCCceeCCCHHHHHHHHHcCCCEEEEeCCCCC-CCCCcCHHHHHHHHHHHh--CCeE
Confidence 4667777767888763 222 12222 8999998876432111 001112334555555443 5777
Q ss_pred EEecCCCCHHHHHHHHHhCcCEEEec
Q 017781 280 FLDGGVRRGTDVFKALALGASGIFIG 305 (366)
Q Consensus 280 i~~GGI~~~~dv~kalalGAd~V~ig 305 (366)
+. ++.+.+++.++..+|+|.+.+.
T Consensus 127 iv--~v~t~~ea~~a~~~G~d~i~~~ 150 (219)
T cd04729 127 MA--DISTLEEALNAAKLGFDIIGTT 150 (219)
T ss_pred EE--ECCCHHHHHHHHHcCCCEEEcc
Confidence 66 6899999999999999999653
|
This reaction is part of the pathway that allows the usage of sialic acid as a carbohydrate source. Sialic acids are a family of related sugars that are found as a component of glycoproteins, gangliosides, and other sialoglycoconjugates. |
| >COG0106 HisA Phosphoribosylformimino-5-aminoimidazole carboxamide ribonucleotide (ProFAR) isomerase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=94.76 E-value=0.16 Score=47.22 Aligned_cols=66 Identities=30% Similarity=0.473 Sum_probs=51.6
Q ss_pred HHcCCcEEEEcC-CCccCCCCCcchHHHHHHHHHHcCCCceEEEecCCCCHHHHHHHHHhCcCEEEecHHH
Q 017781 239 VQAGAAGIIVSN-HGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFIGRPV 308 (366)
Q Consensus 239 ~~aGad~I~vs~-~gg~~~~~~~~~~~~l~~i~~~~~~~i~vi~~GGI~~~~dv~kalalGAd~V~igr~~ 308 (366)
.+.||..+.+-- .|. ..+++-..+++.++.+.+ ++||=.-||||+-+++.+.|.+|++-|.+|+.-
T Consensus 41 ~~~Ga~~lHlVDLdgA--~~g~~~n~~~i~~i~~~~--~~~vQvGGGIRs~~~v~~ll~~G~~rViiGt~a 107 (241)
T COG0106 41 SDQGAEWLHLVDLDGA--KAGGPRNLEAIKEILEAT--DVPVQVGGGIRSLEDVEALLDAGVARVIIGTAA 107 (241)
T ss_pred HHcCCcEEEEeecccc--ccCCcccHHHHHHHHHhC--CCCEEeeCCcCCHHHHHHHHHCCCCEEEEecce
Confidence 456777776422 121 123455778999999988 899999999999999999999999999999943
|
|
| >COG0329 DapA Dihydrodipicolinate synthase/N-acetylneuraminate lyase [Amino acid transport and metabolism / Cell envelope biogenesis, outer membrane] | Back alignment and domain information |
|---|
Probab=94.76 E-value=0.17 Score=48.95 Aligned_cols=103 Identities=24% Similarity=0.364 Sum_probs=64.2
Q ss_pred CCCCHHHHHHHHHhcCCCEEEEeccCHHHHHcCCcEEEEcCCCccCCCCCcc-hHHHHHHHHHHcCCCceEEEecCCCCH
Q 017781 210 RSLSWKDVKWLQTITKLPILVKGVLTAEDVQAGAAGIIVSNHGARQLDYVPA-TIMALEEVVKATQGRIPVFLDGGVRRG 288 (366)
Q Consensus 210 ~~~~~~~i~~lr~~~~~pv~vK~v~~~~d~~aGad~I~vs~~gg~~~~~~~~-~~~~l~~i~~~~~~~i~vi~~GGI~~~ 288 (366)
...+++.++++.+.. .+.|+|+|++.++.|-...-... ..+.+..+++.+.+++|||+--|=.+-
T Consensus 20 g~vD~~a~~~lv~~l--------------i~~Gv~gi~~~GttGE~~~Ls~eEr~~v~~~~v~~~~grvpviaG~g~~~t 85 (299)
T COG0329 20 GSVDEEALRRLVEFL--------------IAAGVDGLVVLGTTGESPTLTLEERKEVLEAVVEAVGGRVPVIAGVGSNST 85 (299)
T ss_pred CCcCHHHHHHHHHHH--------------HHcCCCEEEECCCCccchhcCHHHHHHHHHHHHHHHCCCCcEEEecCCCcH
Confidence 345666666555432 57899999998877643222222 234566667777788998885554444
Q ss_pred HHHH----HHHHhCcCEEEecHHHHHHhhhcCHHHHHHHHHHHHH
Q 017781 289 TDVF----KALALGASGIFIGRPVVYSLAAEGEKGVRRVLEMLRE 329 (366)
Q Consensus 289 ~dv~----kalalGAd~V~igr~~l~~l~~~G~~gv~~~~~~l~~ 329 (366)
.+++ .|-.+|||++++-.|+++.. .++++.+.+..+.+
T Consensus 86 ~eai~lak~a~~~Gad~il~v~PyY~k~---~~~gl~~hf~~ia~ 127 (299)
T COG0329 86 AEAIELAKHAEKLGADGILVVPPYYNKP---SQEGLYAHFKAIAE 127 (299)
T ss_pred HHHHHHHHHHHhcCCCEEEEeCCCCcCC---ChHHHHHHHHHHHH
Confidence 4443 33448999999999998753 34555444444433
|
|
| >PRK13396 3-deoxy-7-phosphoheptulonate synthase; Provisional | Back alignment and domain information |
|---|
Probab=94.68 E-value=0.68 Score=45.69 Aligned_cols=124 Identities=19% Similarity=0.324 Sum_probs=74.1
Q ss_pred HHHHHHHHHhcCCCEEEEecc--CHHH--------HHcCCcEEEEcCCCccCCCC----CcchHHHHHHHHHHcCCCceE
Q 017781 214 WKDVKWLQTITKLPILVKGVL--TAED--------VQAGAAGIIVSNHGARQLDY----VPATIMALEEVVKATQGRIPV 279 (366)
Q Consensus 214 ~~~i~~lr~~~~~pv~vK~v~--~~~d--------~~aGad~I~vs~~gg~~~~~----~~~~~~~l~~i~~~~~~~i~v 279 (366)
...++++-+ +++||++|-.+ +.++ .+.|-+-|++.-.|-|.... -...+.+++.+++.. .+||
T Consensus 198 ~~LL~~va~-t~kPVllk~G~~~t~ee~~~A~e~i~~~Gn~~viL~erG~rtf~s~y~~~~~dl~ai~~lk~~~--~lPV 274 (352)
T PRK13396 198 FSLLKKVGA-QDKPVLLKRGMAATIDEWLMAAEYILAAGNPNVILCERGIRTFDRQYTRNTLDLSVIPVLRSLT--HLPI 274 (352)
T ss_pred HHHHHHHHc-cCCeEEEeCCCCCCHHHHHHHHHHHHHcCCCeEEEEecCCccCcCCCCCCCcCHHHHHHHHHhh--CCCE
Confidence 445666655 58999999553 6666 66788777766555444432 223567788777655 6899
Q ss_pred EEec----CCCC--HHHHHHHHHhCcCEEEecHHHHHHh-hhcCHHHH-HHHHHHHHHHHHHHHHHcCC
Q 017781 280 FLDG----GVRR--GTDVFKALALGASGIFIGRPVVYSL-AAEGEKGV-RRVLEMLREEFELAMALSGC 340 (366)
Q Consensus 280 i~~G----GI~~--~~dv~kalalGAd~V~igr~~l~~l-~~~G~~gv-~~~~~~l~~el~~~m~~~G~ 340 (366)
|+|- |.++ ..-...|+++|||+++|=.-+--.- .++|+..+ -+-++.|.++++..-..+|.
T Consensus 275 i~DpsH~~G~sd~~~~~a~AAva~GAdGliIE~H~~pd~AlsD~~qsl~p~~~~~l~~~i~~i~~~~g~ 343 (352)
T PRK13396 275 MIDPSHGTGKSEYVPSMAMAAIAAGTDSLMIEVHPNPAKALSDGPQSLTPDRFDRLMQELAVIGKTVGR 343 (352)
T ss_pred EECCcccCCcHHHHHHHHHHHHhhCCCeEEEEecCCcccCCChhhhcCCHHHHHHHHHHHHHHHHHhCC
Confidence 9983 3332 2344577889999999987542211 11232211 12344555666666555553
|
|
| >cd02803 OYE_like_FMN_family Old yellow enzyme (OYE)-like FMN binding domain | Back alignment and domain information |
|---|
Probab=94.67 E-value=0.17 Score=49.22 Aligned_cols=210 Identities=17% Similarity=0.225 Sum_probs=106.4
Q ss_pred eeEcCcccCCceEecccccccccCChh---h--HHHHHHHHHcCCceecCCCCCCCHHHHhccCCCceEEEeeecCCHHH
Q 017781 63 TTVLGFKISMPIMIAPTAMQKMAHPEG---E--YATARAASAAGTIMTLSSWSTSSVEEVASTGPGIRFFQLYVYKDRNV 137 (366)
Q Consensus 63 t~l~g~~l~~Pi~iApm~~~~l~~~~~---e--~~la~aa~~~G~~~~vs~~~~~~~e~i~~~~~~~~~~Qly~~~d~~~ 137 (366)
.+|.+.++++-|++|||+-.. ..+++ + ...-+.-++-|+++++++....+.+ ....+ ...-+|....-+.
T Consensus 4 ~~i~~~~l~NR~~~~p~~~~~-~~~~g~~~~~~~~~y~~ra~gg~glii~e~~~v~~~--~~~~~--~~~~~~~~~~~~~ 78 (327)
T cd02803 4 IKIGGLTLKNRIVMAPMTENM-ATEDGTPTDELIEYYEERAKGGVGLIITEAAYVDPE--GKGYP--GQLGIYDDEQIPG 78 (327)
T ss_pred cccCCEeeccccEeccccccc-ccCCCCCCHHHHHHHHHHhCcCCcEEEECcEEEcCc--ccCCC--CCcCcCCHHHHHH
Confidence 467788999999999996332 22222 2 3444444456788887665433211 11111 1122332233455
Q ss_pred HHHHHHHHHHcCCCEEEEecCCCCCcchhHHHhhhcCCCCccccccccccccCCCccccchhhHHHhhhccCCCCCHHHH
Q 017781 138 VAQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLTLKNFQGLDLGKMDEANDSGLAAYVAGQIDRSLSWKDV 217 (366)
Q Consensus 138 ~~~~l~ra~~~G~~ai~vtvd~p~~g~r~~d~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~i 217 (366)
.+++++.+++.|++.++ -+.. .|++......+. .|. . .+ . ............++.++|
T Consensus 79 ~~~~~~~vh~~g~~~~~-Ql~h--~G~~~~~~~~~~-~~~--~-----------~s--~---~~~~~~~~~~~~mt~~ei 136 (327)
T cd02803 79 LRKLTEAVHAHGAKIFA-QLAH--AGRQAQPNLTGG-PPP--A-----------PS--A---IPSPGGGEPPREMTKEEI 136 (327)
T ss_pred HHHHHHHHHhCCCHhhH-HhhC--CCcCCCCcCCCC-Ccc--C-----------CC--C---CCCCCCCCCCCcCCHHHH
Confidence 77778888888877542 2222 222210000000 000 0 00 0 000000001234677888
Q ss_pred HHHHHhcCCCEEEEeccCHHH-HHcCCcEEEEcCCCcc---C----------CCCCcc-------hHHHHHHHHHHcCCC
Q 017781 218 KWLQTITKLPILVKGVLTAED-VQAGAAGIIVSNHGAR---Q----------LDYVPA-------TIMALEEVVKATQGR 276 (366)
Q Consensus 218 ~~lr~~~~~pv~vK~v~~~~d-~~aGad~I~vs~~gg~---~----------~~~~~~-------~~~~l~~i~~~~~~~ 276 (366)
+++.+.+- ..... .++|+|+|.++...|. | ..+|-+ ..+.+..+++.++.+
T Consensus 137 ~~~i~~~~--------~aA~~a~~aGfDgveih~~~gyL~~qFlsp~~n~R~d~yGgs~enr~r~~~eii~avr~~~g~d 208 (327)
T cd02803 137 EQIIEDFA--------AAARRAKEAGFDGVEIHGAHGYLLSQFLSPYTNKRTDEYGGSLENRARFLLEIVAAVREAVGPD 208 (327)
T ss_pred HHHHHHHH--------HHHHHHHHcCCCEEEEcchhhhHHHHhcCccccCCCcccCCCHHHHHHHHHHHHHHHHHHcCCC
Confidence 88877642 01222 8899999999754332 1 111211 246677777777667
Q ss_pred ceEEE--e------cCCCCHH---HHHHHHH-hCcCEEEecHHH
Q 017781 277 IPVFL--D------GGVRRGT---DVFKALA-LGASGIFIGRPV 308 (366)
Q Consensus 277 i~vi~--~------GGI~~~~---dv~kala-lGAd~V~igr~~ 308 (366)
+||.+ + +|. +.+ ++++.++ +|+|.+-+...+
T Consensus 209 ~~i~vris~~~~~~~g~-~~~e~~~la~~l~~~G~d~i~vs~g~ 251 (327)
T cd02803 209 FPVGVRLSADDFVPGGL-TLEEAIEIAKALEEAGVDALHVSGGS 251 (327)
T ss_pred ceEEEEechhccCCCCC-CHHHHHHHHHHHHHcCCCEEEeCCCC
Confidence 77765 3 222 334 4456665 799999876543
|
OYE was the first flavin-dependent enzyme identified, however its true physiological role remains elusive to this day. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Members of OYE family include trimethylamine dehydrogenase, 2,4-dienoyl-CoA reductase, enoate reductase, pentaerythriol tetranitrate reductase, xenobiotic reductase, and morphinone reductase. |
| >COG1830 FbaB DhnA-type fructose-1,6-bisphosphate aldolase and related enzymes [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=94.66 E-value=0.71 Score=43.55 Aligned_cols=60 Identities=30% Similarity=0.467 Sum_probs=44.0
Q ss_pred HHcCCcEEEEcCCCccCCCCCcchHHHHHHHHHHcCCCceEEEecCCCC-HHH-----HHHHHHhCcCEEEecHHHH
Q 017781 239 VQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRR-GTD-----VFKALALGASGIFIGRPVV 309 (366)
Q Consensus 239 ~~aGad~I~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~i~vi~~GGI~~-~~d-----v~kalalGAd~V~igr~~l 309 (366)
.+.|||.|.+.=.| ..+...++.+.+ .+||+.+||=++ .++ +..++..||.++.+||=+.
T Consensus 176 aelGADIiK~~ytg---------~~e~F~~vv~~~--~vpVviaGG~k~~~~~~~l~~~~~ai~aGa~G~~~GRNif 241 (265)
T COG1830 176 AELGADIIKTKYTG---------DPESFRRVVAAC--GVPVVIAGGPKTETEREFLEMVTAAIEAGAMGVAVGRNIF 241 (265)
T ss_pred HHhcCCeEeecCCC---------ChHHHHHHHHhC--CCCEEEeCCCCCCChHHHHHHHHHHHHccCcchhhhhhhh
Confidence 89999999863222 225667777777 499999999988 333 2345668999999999764
|
|
| >TIGR01302 IMP_dehydrog inosine-5'-monophosphate dehydrogenase | Back alignment and domain information |
|---|
Probab=94.64 E-value=0.098 Score=53.44 Aligned_cols=61 Identities=21% Similarity=0.362 Sum_probs=49.9
Q ss_pred HHcCCcEEEEcCCCccCCCCCcchHHHHHHHHHHcCCCceEEEecCCCCHHHHHHHHHhCcCEEEec
Q 017781 239 VQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFIG 305 (366)
Q Consensus 239 ~~aGad~I~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~i~vi~~GGI~~~~dv~kalalGAd~V~ig 305 (366)
.++|+|.|.|....|+ ....++.+.++++..+ ++||++ |.|-|.+++..++.+|||+|-+|
T Consensus 233 ~~aG~d~I~vd~a~g~----~~~~~~~i~~i~~~~~-~~~vi~-G~v~t~~~a~~l~~aGad~i~vg 293 (450)
T TIGR01302 233 VKAGVDVIVIDSSHGH----SIYVIDSIKEIKKTYP-DLDIIA-GNVATAEQAKALIDAGADGLRVG 293 (450)
T ss_pred HHhCCCEEEEECCCCc----HhHHHHHHHHHHHhCC-CCCEEE-EeCCCHHHHHHHHHhCCCEEEEC
Confidence 8999999999874442 2346678888887653 689888 99999999999999999999766
|
This model describes a rather tightly conserved cluster of IMP dehydrogenase sequences, many of which are characterized. The model excludes two related families of proteins proposed also to be IMP dehydrogenases, but without characterized members. These are related families are the subject of separate models. |
| >CHL00200 trpA tryptophan synthase alpha subunit; Provisional | Back alignment and domain information |
|---|
Probab=94.58 E-value=0.52 Score=44.69 Aligned_cols=37 Identities=22% Similarity=0.314 Sum_probs=30.2
Q ss_pred HHHHHHHHHhcCCCEEEEe-ccCHHH----HHcCCcEEEEcC
Q 017781 214 WKDVKWLQTITKLPILVKG-VLTAED----VQAGAAGIIVSN 250 (366)
Q Consensus 214 ~~~i~~lr~~~~~pv~vK~-v~~~~d----~~aGad~I~vs~ 250 (366)
.+.++++|+.++.|+.+.. +.++++ .++|||+++|..
T Consensus 191 ~~~i~~ir~~t~~Pi~vGFGI~~~e~~~~~~~~GADGvVVGS 232 (263)
T CHL00200 191 KKLIETIKKMTNKPIILGFGISTSEQIKQIKGWNINGIVIGS 232 (263)
T ss_pred HHHHHHHHHhcCCCEEEECCcCCHHHHHHHHhcCCCEEEECH
Confidence 3568999999999999984 456777 789999999854
|
|
| >PRK07565 dihydroorotate dehydrogenase 2; Reviewed | Back alignment and domain information |
|---|
Probab=94.58 E-value=0.4 Score=46.98 Aligned_cols=90 Identities=19% Similarity=0.202 Sum_probs=58.0
Q ss_pred HHHHHHHHhcCCCEEEEec-cCHHH--------HHcCCcEEEEcC---CCccCCCCC-c--chHHHHHHHHHHcCCCceE
Q 017781 215 KDVKWLQTITKLPILVKGV-LTAED--------VQAGAAGIIVSN---HGARQLDYV-P--ATIMALEEVVKATQGRIPV 279 (366)
Q Consensus 215 ~~i~~lr~~~~~pv~vK~v-~~~~d--------~~aGad~I~vs~---~gg~~~~~~-~--~~~~~l~~i~~~~~~~i~v 279 (366)
+.++.+++..++|++++.. .+.++ .++|+|+|.+.- ++.....+. + ..++.+.++++.+ ++||
T Consensus 91 ~~i~~~~~~~~~pvi~sI~g~~~~e~~~~a~~~~~agad~ielN~scpp~~~~~~g~~~~~~~~eil~~v~~~~--~iPV 168 (334)
T PRK07565 91 ELIRRAKEAVDIPVIASLNGSSAGGWVDYARQIEQAGADALELNIYYLPTDPDISGAEVEQRYLDILRAVKSAV--SIPV 168 (334)
T ss_pred HHHHHHHHhcCCcEEEEeccCCHHHHHHHHHHHHHcCCCEEEEeCCCCCCCCCCccccHHHHHHHHHHHHHhcc--CCcE
Confidence 3466676767899999975 34443 778999999832 111111111 1 1345666666665 6898
Q ss_pred EEe--cCCCCHHHHHHHHH-hCcCEEEecH
Q 017781 280 FLD--GGVRRGTDVFKALA-LGASGIFIGR 306 (366)
Q Consensus 280 i~~--GGI~~~~dv~kala-lGAd~V~igr 306 (366)
++- +++.+..++++++. .|||+|.+-.
T Consensus 169 ~vKl~p~~~~~~~~a~~l~~~G~dgI~~~n 198 (334)
T PRK07565 169 AVKLSPYFSNLANMAKRLDAAGADGLVLFN 198 (334)
T ss_pred EEEeCCCchhHHHHHHHHHHcCCCeEEEEC
Confidence 876 45556778888775 8999987743
|
|
| >PRK07709 fructose-bisphosphate aldolase; Provisional | Back alignment and domain information |
|---|
Probab=94.57 E-value=0.7 Score=44.36 Aligned_cols=98 Identities=19% Similarity=0.218 Sum_probs=70.2
Q ss_pred HHcCCcEEEEcC---CCccCCCCCc--chHHHHHHHHHHcCCCceEEEecCCCCH-HHHHHHHHhCcCEEEecHHHHHHh
Q 017781 239 VQAGAAGIIVSN---HGARQLDYVP--ATIMALEEVVKATQGRIPVFLDGGVRRG-TDVFKALALGASGIFIGRPVVYSL 312 (366)
Q Consensus 239 ~~aGad~I~vs~---~gg~~~~~~~--~~~~~l~~i~~~~~~~i~vi~~GGI~~~-~dv~kalalGAd~V~igr~~l~~l 312 (366)
.+.|+|.+-++. ||- +.+. -.++.|.+|++.+ ++|+..=||=..+ +++.|++.+|..-|-+++-+-.+.
T Consensus 166 ~~TgvD~LAvaiGt~HG~---Y~~~p~L~~~~L~~I~~~~--~iPLVLHGgSG~~~e~~~~ai~~Gi~KiNi~T~l~~a~ 240 (285)
T PRK07709 166 EATGIDCLAPALGSVHGP---YKGEPNLGFAEMEQVRDFT--GVPLVLHGGTGIPTADIEKAISLGTSKINVNTENQIEF 240 (285)
T ss_pred HHhCCCEEEEeecccccC---cCCCCccCHHHHHHHHHHH--CCCEEEeCCCCCCHHHHHHHHHcCCeEEEeChHHHHHH
Confidence 678999999874 442 2233 3678899999988 7999999987777 677789999999999999765432
Q ss_pred hh-------cC------HHHHHHHHHHHHHHHHHHHHHcCCC
Q 017781 313 AA-------EG------EKGVRRVLEMLREEFELAMALSGCR 341 (366)
Q Consensus 313 ~~-------~G------~~gv~~~~~~l~~el~~~m~~~G~~ 341 (366)
.. .. ..-.....+.+++..+..|+.+|+.
T Consensus 241 ~~~~~~~~~~~~~~~d~~~~~~~~~~a~~~~v~~~i~~~gs~ 282 (285)
T PRK07709 241 TKAVREVLNKDQEVYDPRKFIGPGRDAIKATVIGKIREFGSN 282 (285)
T ss_pred HHHHHHHHHhCCCcCCHHHHHHHHHHHHHHHHHHHHHHhCCC
Confidence 10 00 1223344566778888888888864
|
|
| >PRK12857 fructose-1,6-bisphosphate aldolase; Reviewed | Back alignment and domain information |
|---|
Probab=94.55 E-value=4.6 Score=38.75 Aligned_cols=98 Identities=19% Similarity=0.264 Sum_probs=67.3
Q ss_pred HHcCCcEEEEcC---CCccCCCCCc--chHHHHHHHHHHcCCCceEEEecCCCCH-HHHHHHHHhCcCEEEecHHHHHHh
Q 017781 239 VQAGAAGIIVSN---HGARQLDYVP--ATIMALEEVVKATQGRIPVFLDGGVRRG-TDVFKALALGASGIFIGRPVVYSL 312 (366)
Q Consensus 239 ~~aGad~I~vs~---~gg~~~~~~~--~~~~~l~~i~~~~~~~i~vi~~GGI~~~-~dv~kalalGAd~V~igr~~l~~l 312 (366)
.+.|+|.+-|+. ||.+ .+. -.++.|.+|++.+ ++|+..=||=..+ +++.|++.+|..-|-+++-+..+.
T Consensus 165 ~~TgvD~LAvaiGt~HG~y---~~~p~Ld~~~L~~i~~~~--~vPLVlHGgSG~~~e~~~~ai~~Gi~KiNi~T~~~~a~ 239 (284)
T PRK12857 165 EETGVDALAIAIGTAHGPY---KGEPKLDFDRLAKIKELV--NIPIVLHGSSGVPDEAIRKAISLGVRKVNIDTNIREAF 239 (284)
T ss_pred HHHCCCEEeeccCcccccc---CCCCcCCHHHHHHHHHHh--CCCEEEeCCCCCCHHHHHHHHHcCCeEEEeCcHHHHHH
Confidence 567899998874 4432 233 3678899999988 7999888865554 556779999999999999775442
Q ss_pred hh-------cC------HHHHHHHHHHHHHHHHHHHHHcCCC
Q 017781 313 AA-------EG------EKGVRRVLEMLREEFELAMALSGCR 341 (366)
Q Consensus 313 ~~-------~G------~~gv~~~~~~l~~el~~~m~~~G~~ 341 (366)
.. .. ..-.....+.+++..+..|+.+|..
T Consensus 240 ~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~v~~~i~~~gs~ 281 (284)
T PRK12857 240 VARLREVLEKNPDEIDPRKILGPAREAAKEVIREKIRLFGSA 281 (284)
T ss_pred HHHHHHHHHhCCCcCCHHHHHHHHHHHHHHHHHHHHHHhCCC
Confidence 10 00 1223444566777777888887754
|
|
| >PRK06015 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional | Back alignment and domain information |
|---|
Probab=94.55 E-value=0.24 Score=45.08 Aligned_cols=77 Identities=16% Similarity=0.197 Sum_probs=52.9
Q ss_pred CHHHHHHHHHhcC-CCEEEEeccCHHH----HHcCCcEEEEcCCCccCCCCCcchHHHHHHHHHHcCCCceEEEecCCCC
Q 017781 213 SWKDVKWLQTITK-LPILVKGVLTAED----VQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRR 287 (366)
Q Consensus 213 ~~~~i~~lr~~~~-~pv~vK~v~~~~d----~~aGad~I~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~i~vi~~GGI~~ 287 (366)
..+.|+.+++..+ +-|....|++.++ .++|+++|+ |-+ ...+.+..++ .. ++|++ =|+.|
T Consensus 42 a~~~I~~l~~~~~~~~vGAGTVl~~e~a~~ai~aGA~Fiv-SP~---------~~~~vi~~a~-~~--~i~~i--PG~~T 106 (201)
T PRK06015 42 ALDAIRAVAAEVEEAIVGAGTILNAKQFEDAAKAGSRFIV-SPG---------TTQELLAAAN-DS--DVPLL--PGAAT 106 (201)
T ss_pred HHHHHHHHHHHCCCCEEeeEeCcCHHHHHHHHHcCCCEEE-CCC---------CCHHHHHHHH-Hc--CCCEe--CCCCC
Confidence 3466888988774 4455556788887 999999996 221 1223333333 22 44444 58999
Q ss_pred HHHHHHHHHhCcCEEEe
Q 017781 288 GTDVFKALALGASGIFI 304 (366)
Q Consensus 288 ~~dv~kalalGAd~V~i 304 (366)
+.++..|+.+||+.|=+
T Consensus 107 ptEi~~A~~~Ga~~vK~ 123 (201)
T PRK06015 107 PSEVMALREEGYTVLKF 123 (201)
T ss_pred HHHHHHHHHCCCCEEEE
Confidence 99999999999998843
|
|
| >PRK00208 thiG thiazole synthase; Reviewed | Back alignment and domain information |
|---|
Probab=94.52 E-value=0.2 Score=46.82 Aligned_cols=104 Identities=20% Similarity=0.340 Sum_probs=65.9
Q ss_pred CceEEEeeecCCHH----HHHHHHHHHHHc---CCCEEEEecCCCCCcchhHHHhhhcCCCCccccccccccccCCCccc
Q 017781 123 GIRFFQLYVYKDRN----VVAQLVRRAERA---GFKAIALTVDTPRLGRREADIKNRFTLPPFLTLKNFQGLDLGKMDEA 195 (366)
Q Consensus 123 ~~~~~Qly~~~d~~----~~~~~l~ra~~~---G~~ai~vtvd~p~~g~r~~d~~~~~~~p~~~~~~~~~~~~~~~~~~~ 195 (366)
+..|+.|-+-.|+. ...+.+++++.. |+..+-+..|.|...+|..++.-.+-.| +
T Consensus 90 ~~~~iKlEVi~d~~~llpd~~~tv~aa~~L~~~Gf~vlpyc~~d~~~ak~l~~~G~~~vmP-------l----------- 151 (250)
T PRK00208 90 GTNWIKLEVIGDDKTLLPDPIETLKAAEILVKEGFVVLPYCTDDPVLAKRLEEAGCAAVMP-------L----------- 151 (250)
T ss_pred CCCeEEEEEecCCCCCCcCHHHHHHHHHHHHHCCCEEEEEeCCCHHHHHHHHHcCCCEeCC-------C-----------
Confidence 34577775433322 245566777776 9999877778887777776652111111 0
Q ss_pred cchhhHHHhhhccCCCCCHHHHHHHHHhcCCCEEEEe-ccCHHH----HHcCCcEEEEcC
Q 017781 196 NDSGLAAYVAGQIDRSLSWKDVKWLQTITKLPILVKG-VLTAED----VQAGAAGIIVSN 250 (366)
Q Consensus 196 ~~~~~~~~~~~~~d~~~~~~~i~~lr~~~~~pv~vK~-v~~~~d----~~aGad~I~vs~ 250 (366)
++.+.+ ..+-.+++.++.+++..++||++-+ +.+++| .+.|+|++.|..
T Consensus 152 -----g~pIGs-g~gi~~~~~i~~i~e~~~vpVIveaGI~tpeda~~AmelGAdgVlV~S 205 (250)
T PRK00208 152 -----GAPIGS-GLGLLNPYNLRIIIEQADVPVIVDAGIGTPSDAAQAMELGADAVLLNT 205 (250)
T ss_pred -----CcCCCC-CCCCCCHHHHHHHHHhcCCeEEEeCCCCCHHHHHHHHHcCCCEEEECh
Confidence 000111 1122257779999998889999985 568888 999999998743
|
|
| >TIGR02320 PEP_mutase phosphoenolpyruvate phosphomutase | Back alignment and domain information |
|---|
Probab=94.50 E-value=2.8 Score=40.24 Aligned_cols=182 Identities=18% Similarity=0.098 Sum_probs=96.7
Q ss_pred hHHHHHHHHHc---------CCceec-CCCC-----------CCCHHHHhc-------cCCCceEEEeeecCCHHHHHHH
Q 017781 90 EYATARAASAA---------GTIMTL-SSWS-----------TSSVEEVAS-------TGPGIRFFQLYVYKDRNVVAQL 141 (366)
Q Consensus 90 e~~la~aa~~~---------G~~~~v-s~~~-----------~~~~e~i~~-------~~~~~~~~Qly~~~d~~~~~~~ 141 (366)
+...|+.+++. |...+- |+.+ ..+.+|... ...-|..+=.=.+.++..+.+.
T Consensus 18 D~~SA~~~e~~~~~~~~~~~Gf~ai~~ss~~~a~s~G~pD~~~~~~~e~~~~~~~I~~a~~~Pv~~D~d~Gg~~~~v~r~ 97 (285)
T TIGR02320 18 NGLSALIAEEARVEVGGESLGFDGIWSSSLTDSTSRGVPDIEEASWTQRLDVVEFMFDVTTKPIILDGDTGGNFEHFRRL 97 (285)
T ss_pred CHHHHHHHHHhhhcccCcCCCcCEEEechHHHHHHCCCCCcCcCCHHHHHHHHHHHHhhcCCCEEEecCCCCCHHHHHHH
Confidence 55678888888 776553 3211 124444432 2223544444334677788888
Q ss_pred HHHHHHcCCCEEEEecCCCCCcchhHHHhhhcCCCCccccccccccccCCCccccchhhHHHhhhccCCCCCHHHHHHHH
Q 017781 142 VRRAERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLTLKNFQGLDLGKMDEANDSGLAAYVAGQIDRSLSWKDVKWLQ 221 (366)
Q Consensus 142 l~ra~~~G~~ai~vtvd~p~~g~r~~d~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~i~~lr 221 (366)
+++..++|+.++.|. |.. .|++... +.. . +.... .+...-.+.|+..+
T Consensus 98 V~~l~~aGvaGi~iE-Dq~--------------~pk~cg~--~~~---------~--~~~~l----~s~ee~~~kI~Aa~ 145 (285)
T TIGR02320 98 VRKLERRGVSAVCIE-DKL--------------GLKKNSL--FGN---------D--VAQPQ----ASVEEFCGKIRAGK 145 (285)
T ss_pred HHHHHHcCCeEEEEe-ccC--------------CCccccc--cCC---------C--Ccccc----cCHHHHHHHHHHHH
Confidence 999999999888762 211 1221110 000 0 00000 00011123355554
Q ss_pred Hh-c--CCCEEEE----e-ccCHHH--------HHcCCcEEEEcCCCccCCCCCcchHHHHHHHHHHcCC---CceEEEe
Q 017781 222 TI-T--KLPILVK----G-VLTAED--------VQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQG---RIPVFLD 282 (366)
Q Consensus 222 ~~-~--~~pv~vK----~-v~~~~d--------~~aGad~I~vs~~gg~~~~~~~~~~~~l~~i~~~~~~---~i~vi~~ 282 (366)
+. . +++|+.. . ..+.++ .++|||+|.+-. ++.+.+.+.++.+.++. ++|+++.
T Consensus 146 ~a~~~~~~~IiARTDa~~~~~~~~eAi~Ra~ay~eAGAD~ifv~~--------~~~~~~ei~~~~~~~~~~~p~~pl~~~ 217 (285)
T TIGR02320 146 DAQTTEDFMIIARVESLILGKGMEDALKRAEAYAEAGADGIMIHS--------RKKDPDEILEFARRFRNHYPRTPLVIV 217 (285)
T ss_pred HhccCCCeEEEEecccccccCCHHHHHHHHHHHHHcCCCEEEecC--------CCCCHHHHHHHHHHhhhhCCCCCEEEe
Confidence 43 2 4566666 1 224444 999999998842 22455666666666543 5687765
Q ss_pred cCCCCHHHHHHHHHhCcCEEEecHHHHHH
Q 017781 283 GGVRRGTDVFKALALGASGIFIGRPVVYS 311 (366)
Q Consensus 283 GGI~~~~dv~kalalGAd~V~igr~~l~~ 311 (366)
.+-.-...+...-++|.+.|..|..++++
T Consensus 218 ~~~~~~~~~~eL~~lG~~~v~~~~~~~~a 246 (285)
T TIGR02320 218 PTSYYTTPTDEFRDAGISVVIYANHLLRA 246 (285)
T ss_pred cCCCCCCCHHHHHHcCCCEEEEhHHHHHH
Confidence 43111123445556899999999877664
|
A closely related enzyme, phosphonopyruvate hydrolase from Variovorax sp. Pal2, is excluded from this model. |
| >PRK05096 guanosine 5'-monophosphate oxidoreductase; Provisional | Back alignment and domain information |
|---|
Probab=94.49 E-value=0.27 Score=47.97 Aligned_cols=59 Identities=15% Similarity=0.098 Sum_probs=45.6
Q ss_pred cCCcEEEEcCCCccCCCCCcchHHHHHHHHHHcCCCceEEEecCCCCHHHHHHHHHhCcCEEEec
Q 017781 241 AGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFIG 305 (366)
Q Consensus 241 aGad~I~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~i~vi~~GGI~~~~dv~kalalGAd~V~ig 305 (366)
+|+|.|+++-..|+ ....++.++++++..+ +++||+ |.|-|++-+...+.+|||+|=+|
T Consensus 121 ~g~D~iviD~AhGh----s~~~i~~ik~ik~~~P-~~~vIa-GNV~T~e~a~~Li~aGAD~vKVG 179 (346)
T PRK05096 121 PALNFICIDVANGY----SEHFVQFVAKAREAWP-DKTICA-GNVVTGEMVEELILSGADIVKVG 179 (346)
T ss_pred CCCCEEEEECCCCc----HHHHHHHHHHHHHhCC-CCcEEE-ecccCHHHHHHHHHcCCCEEEEc
Confidence 69999999864442 2346778888888774 577666 99999998888888999998544
|
|
| >TIGR00683 nanA N-acetylneuraminate lyase | Back alignment and domain information |
|---|
Probab=94.39 E-value=0.24 Score=47.59 Aligned_cols=88 Identities=10% Similarity=0.150 Sum_probs=56.0
Q ss_pred HHcC-CcEEEEcCCCccCCCCCcc-hHHHHHHHHHHcCCCceEEEecCCCCHHHHHH----HHHhCcCEEEecHHHHHHh
Q 017781 239 VQAG-AAGIIVSNHGARQLDYVPA-TIMALEEVVKATQGRIPVFLDGGVRRGTDVFK----ALALGASGIFIGRPVVYSL 312 (366)
Q Consensus 239 ~~aG-ad~I~vs~~gg~~~~~~~~-~~~~l~~i~~~~~~~i~vi~~GGI~~~~dv~k----alalGAd~V~igr~~l~~l 312 (366)
.+.| +|+|.+.++.|-...-... ..+.+..+++.+.+++||++.=|-.+-.|+++ |-.+|||+|++..|+.+..
T Consensus 31 i~~G~v~gi~~~GstGE~~~Lt~eEr~~~~~~~~~~~~~~~pvi~gv~~~~t~~~i~la~~a~~~Gad~v~v~~P~y~~~ 110 (290)
T TIGR00683 31 IDKMKVDGLYVGGSTGENFMLSTEEKKEIFRIAKDEAKDQIALIAQVGSVNLKEAVELGKYATELGYDCLSAVTPFYYKF 110 (290)
T ss_pred HhCCCcCEEEECCcccccccCCHHHHHHHHHHHHHHhCCCCcEEEecCCCCHHHHHHHHHHHHHhCCCEEEEeCCcCCCC
Confidence 4678 9999998876643222222 23445556666677899987645444555543 3348999999999987652
Q ss_pred hhcCHHHHHHHHHHHHH
Q 017781 313 AAEGEKGVRRVLEMLRE 329 (366)
Q Consensus 313 ~~~G~~gv~~~~~~l~~ 329 (366)
.++++.+++..+.+
T Consensus 111 ---~~~~i~~yf~~v~~ 124 (290)
T TIGR00683 111 ---SFPEIKHYYDTIIA 124 (290)
T ss_pred ---CHHHHHHHHHHHHh
Confidence 34555555555543
|
N-acetylneuraminate lyase is also known as N-acetylneuraminic acid aldolase, sialic acid aldolase, or sialate lyase. It is an intracellular enzyme. The structure of this homotetrameric enzyme related to dihydrodipicolinate synthase is known. In Clostridium tertium, the enzyme appears to be in an operon with a secreted sialidase that releases sialic acid from host sialoglycoconjugates. In several E. coli strains, however, this enzyme is responsible for N-acetyl-D-neuraminic acid synthesis for capsule production by condensing N-acetyl-D-mannosamine and pyruvate. |
| >COG2089 SpsE Sialic acid synthase [Cell envelope biogenesis, outer membrane] | Back alignment and domain information |
|---|
Probab=94.30 E-value=1.6 Score=42.40 Aligned_cols=239 Identities=17% Similarity=0.178 Sum_probs=121.5
Q ss_pred eEcCccc---CCceEecccccccccCChhhHHHHHHHHHcCCceecCCCCCCCHHHHhcc-CC----------CceEEEe
Q 017781 64 TVLGFKI---SMPIMIAPTAMQKMAHPEGEYATARAASAAGTIMTLSSWSTSSVEEVAST-GP----------GIRFFQL 129 (366)
Q Consensus 64 ~l~g~~l---~~Pi~iApm~~~~l~~~~~e~~la~aa~~~G~~~~vs~~~~~~~e~i~~~-~~----------~~~~~Ql 129 (366)
+++|+.+ ..|++||=+|...-..-+--.++.++|+++|+-.+=- +.-...+.+... .+ +.-.+|+
T Consensus 3 ~Ig~r~i~~~~~~~iIAEig~NHnG~le~A~~lIdaAk~aGADavKf-Qt~~~~d~~t~~~~~~~~~i~~~~~~~slyel 81 (347)
T COG2089 3 KIGNRTIGKDKKPFIIAEIGANHNGDLERAKELIDAAKEAGADAVKF-QTFYTPDIMTLESKNVPFKIKTLWDKVSLYEL 81 (347)
T ss_pred eeCceeecCCCCcEEEeeecccccCcHHHHHHHHHHHHHcCcceeee-ecccccccccccccCCccccccccccccHHHH
Confidence 4555543 5799999987543211122358889999999987621 111111222111 00 1122444
Q ss_pred ee--cCCHHHHHHHHHHHHHcCCCEEEEecCCCCCcchhHHHhhhcCCCCccccccccccccCCCccccchhhHHHhhhc
Q 017781 130 YV--YKDRNVVAQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLTLKNFQGLDLGKMDEANDSGLAAYVAGQ 207 (366)
Q Consensus 130 y~--~~d~~~~~~~l~ra~~~G~~ai~vtvd~p~~g~r~~d~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 207 (366)
|- .-+.++..++.+.|++.|.-.+ .+| ...+..|+.+.+..|. + .+
T Consensus 82 ~e~~~~p~e~~~~Lke~a~~~Gi~~~----SSP-fd~~svd~l~~~~~~a---------y---KI--------------- 129 (347)
T COG2089 82 YEEAETPLEWHAQLKEYARKRGIIFF----SSP-FDLTAVDLLESLNPPA---------Y---KI--------------- 129 (347)
T ss_pred HHHhcCCHHHHHHHHHHHHHcCeEEE----ecC-CCHHHHHHHHhcCCCe---------E---Ee---------------
Confidence 42 2356778888899998874332 333 3344455555443221 0 00
Q ss_pred cCCCCC-HHHHHHHHHhcCCCEEEEec-cCHHH--------HHcCCc-EEEEcCCCccCCCCCcchHHHHHHHHHHcCCC
Q 017781 208 IDRSLS-WKDVKWLQTITKLPILVKGV-LTAED--------VQAGAA-GIIVSNHGARQLDYVPATIMALEEVVKATQGR 276 (366)
Q Consensus 208 ~d~~~~-~~~i~~lr~~~~~pv~vK~v-~~~~d--------~~aGad-~I~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~ 276 (366)
.....+ ...|+.+.+. +.|+|+=.. .+.++ .+.|.- .+.++....+........+..++.+++.. .
T Consensus 130 aS~E~~~~plik~iA~~-~kPiIlSTGma~~~ei~~av~~~r~~g~~~i~LLhC~s~YPap~ed~NL~~i~~l~~~F--n 206 (347)
T COG2089 130 ASGEINDLPLIKYIAKK-GKPIILSTGMATIEEIEEAVAILRENGNPDIALLHCTSAYPAPFEDVNLKAIPKLAEAF--N 206 (347)
T ss_pred cCccccChHHHHHHHhc-CCCEEEEcccccHHHHHHHHHHHHhcCCCCeEEEEecCCCCCCHHHhhHHHHHHHHHHh--C
Confidence 012233 3457776664 679988844 45544 566654 44454432221111112345666777665 4
Q ss_pred ceEEEecCCCCHHHHHHHHHhCcCEEEecHHHHHHhhhcCHHHH----HHHHHHHHHHHHHHHHHcCC
Q 017781 277 IPVFLDGGVRRGTDVFKALALGASGIFIGRPVVYSLAAEGEKGV----RRVLEMLREEFELAMALSGC 340 (366)
Q Consensus 277 i~vi~~GGI~~~~dv~kalalGAd~V~igr~~l~~l~~~G~~gv----~~~~~~l~~el~~~m~~~G~ 340 (366)
++|=.|.-=..-.-.+-|+++||. +|-+-|.-.....|++.. -+-+..|.+.++..-..+|.
T Consensus 207 ~~vGlSDHT~g~~a~l~AvALGA~--viEKHFtldk~~~GpD~~fSldP~efk~mv~~ir~~~~alG~ 272 (347)
T COG2089 207 AIVGLSDHTLGILAPLAAVALGAS--VIEKHFTLDKSREGPDHAFSLDPDEFKEMVDAIRQVEKALGD 272 (347)
T ss_pred CccccccCccchhHHHHHHHhccc--ceeeeeeecCCCCCCCcceecCHHHHHHHHHHHHHHHHHhCC
Confidence 555444422223334568899995 457777654444454211 01234455555555556664
|
|
| >TIGR03249 KdgD 5-dehydro-4-deoxyglucarate dehydratase | Back alignment and domain information |
|---|
Probab=94.29 E-value=0.23 Score=47.79 Aligned_cols=88 Identities=20% Similarity=0.334 Sum_probs=57.6
Q ss_pred HHcCCcEEEEcCCCccCCCCCcc-hHHHHHHHHHHcCCCceEEEecCCCCHHHHHH----HHHhCcCEEEecHHHHHHhh
Q 017781 239 VQAGAAGIIVSNHGARQLDYVPA-TIMALEEVVKATQGRIPVFLDGGVRRGTDVFK----ALALGASGIFIGRPVVYSLA 313 (366)
Q Consensus 239 ~~aGad~I~vs~~gg~~~~~~~~-~~~~l~~i~~~~~~~i~vi~~GGI~~~~dv~k----alalGAd~V~igr~~l~~l~ 313 (366)
.+.|+|+|.+.++.|-...-... ..+++..+++.+.+++||++.=|- +-.+.++ |-.+|||++++-.|+++..
T Consensus 36 ~~~Gv~gi~v~GstGE~~~Lt~eEr~~v~~~~~~~~~g~~pvi~gv~~-~t~~ai~~a~~a~~~Gadav~~~pP~y~~~- 113 (296)
T TIGR03249 36 LGYGLEALFAAGGTGEFFSLTPAEYEQVVEIAVSTAKGKVPVYTGVGG-NTSDAIEIARLAEKAGADGYLLLPPYLING- 113 (296)
T ss_pred HhcCCCEEEECCCCcCcccCCHHHHHHHHHHHHHHhCCCCcEEEecCc-cHHHHHHHHHHHHHhCCCEEEECCCCCCCC-
Confidence 56899999998876643322222 234555566777778998887663 4555543 3348999999999987642
Q ss_pred hcCHHHHHHHHHHHHHH
Q 017781 314 AEGEKGVRRVLEMLREE 330 (366)
Q Consensus 314 ~~G~~gv~~~~~~l~~e 330 (366)
.++++.+++..+.+.
T Consensus 114 --s~~~i~~~f~~v~~a 128 (296)
T TIGR03249 114 --EQEGLYAHVEAVCES 128 (296)
T ss_pred --CHHHHHHHHHHHHhc
Confidence 356666666555443
|
5-dehydro-4-deoxyglucarate dehydratase not only catalyzes the dehydration of the substrate (diol to ketone + water), but causes the decarboxylation of the intermediate product to yield 2-oxoglutarate semialdehyde (2,5-dioxopentanoate). The gene for the enzyme is usually observed in the vicinity of transporters and dehydratases handling D-galactarate and D-gluconate as well as aldehyde dehydrogenases which convert the product to alpha-ketoglutarate. |
| >TIGR00674 dapA dihydrodipicolinate synthase | Back alignment and domain information |
|---|
Probab=94.14 E-value=0.29 Score=46.73 Aligned_cols=88 Identities=20% Similarity=0.353 Sum_probs=57.0
Q ss_pred HHcCCcEEEEcCCCccCCCCCcc-hHHHHHHHHHHcCCCceEEEecCCCCHHHHHH----HHHhCcCEEEecHHHHHHhh
Q 017781 239 VQAGAAGIIVSNHGARQLDYVPA-TIMALEEVVKATQGRIPVFLDGGVRRGTDVFK----ALALGASGIFIGRPVVYSLA 313 (366)
Q Consensus 239 ~~aGad~I~vs~~gg~~~~~~~~-~~~~l~~i~~~~~~~i~vi~~GGI~~~~dv~k----alalGAd~V~igr~~l~~l~ 313 (366)
.+.|+|+|.+.++.|....-... ..+.+..+++.+.+++||++.=|-.+-.++++ |-.+|||+|++..|+.+..
T Consensus 29 ~~~Gv~Gi~~~GstGE~~~Ls~~Er~~~~~~~~~~~~~~~~vi~gv~~~s~~~~i~~a~~a~~~Gad~v~v~pP~y~~~- 107 (285)
T TIGR00674 29 IENGTDAIVVVGTTGESPTLSHEEHKKVIEFVVDLVNGRVPVIAGTGSNATEEAISLTKFAEDVGADGFLVVTPYYNKP- 107 (285)
T ss_pred HHcCCCEEEECccCcccccCCHHHHHHHHHHHHHHhCCCCeEEEeCCCccHHHHHHHHHHHHHcCCCEEEEcCCcCCCC-
Confidence 46799999998776643222222 23455666666777899987666556666553 3347999999999987642
Q ss_pred hcCHHHHHHHHHHHHH
Q 017781 314 AEGEKGVRRVLEMLRE 329 (366)
Q Consensus 314 ~~G~~gv~~~~~~l~~ 329 (366)
.++++.+++..+.+
T Consensus 108 --~~~~i~~~~~~i~~ 121 (285)
T TIGR00674 108 --TQEGLYQHFKAIAE 121 (285)
T ss_pred --CHHHHHHHHHHHHh
Confidence 35555555555443
|
Dihydrodipicolinate synthase is a homotetrameric enzyme of lysine biosynthesis. E. coli has several paralogs closely related to dihydrodipicoline synthase (DapA), as well as the more distant N-acetylneuraminate lyase. In Pyrococcus horikoshii, the bidirectional best hit with E. coli is to an uncharacterized paralog of DapA, not DapA itself, and it is omitted from the seed. The putative members from the Chlamydias (pathogens with a parasitic metabolism) are easily the most divergent members of the multiple alignment. |
| >COG0157 NadC Nicotinate-nucleotide pyrophosphorylase [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=94.10 E-value=0.53 Score=44.68 Aligned_cols=85 Identities=24% Similarity=0.270 Sum_probs=61.8
Q ss_pred CHH-HHHHHHHhcCC-CEEEEeccCHHH----HHcCCcEEEEcCCCccCCCCCcchHHHHHHHHHH--cCCCceEEEecC
Q 017781 213 SWK-DVKWLQTITKL-PILVKGVLTAED----VQAGAAGIIVSNHGARQLDYVPATIMALEEVVKA--TQGRIPVFLDGG 284 (366)
Q Consensus 213 ~~~-~i~~lr~~~~~-pv~vK~v~~~~d----~~aGad~I~vs~~gg~~~~~~~~~~~~l~~i~~~--~~~~i~vi~~GG 284 (366)
+|+ .|+++|+..+. +-+-=.+-+.++ .++|+|.|-+.|. +.+.+.++.+. ..+++-+=+|||
T Consensus 173 ~i~~Av~~aR~~~~~~~kIEVEvesle~~~eAl~agaDiImLDNm----------~~e~~~~av~~l~~~~~~~lEaSGg 242 (280)
T COG0157 173 SITEAVRRARAAAPFTKKIEVEVESLEEAEEALEAGADIIMLDNM----------SPEELKEAVKLLGLAGRALLEASGG 242 (280)
T ss_pred cHHHHHHHHHHhCCCCceEEEEcCCHHHHHHHHHcCCCEEEecCC----------CHHHHHHHHHHhccCCceEEEEeCC
Confidence 564 48888887532 223234567777 9999999999884 22445555554 445788999999
Q ss_pred CCCHHHHHHHHHhCcCEEEecHHH
Q 017781 285 VRRGTDVFKALALGASGIFIGRPV 308 (366)
Q Consensus 285 I~~~~dv~kalalGAd~V~igr~~ 308 (366)
| +.+.+..+-.+|.|.+.+|.+.
T Consensus 243 I-t~~ni~~yA~tGVD~IS~galt 265 (280)
T COG0157 243 I-TLENIREYAETGVDVISVGALT 265 (280)
T ss_pred C-CHHHHHHHhhcCCCEEEeCccc
Confidence 9 6788888888999999999764
|
|
| >PRK04147 N-acetylneuraminate lyase; Provisional | Back alignment and domain information |
|---|
Probab=94.09 E-value=0.27 Score=47.17 Aligned_cols=87 Identities=16% Similarity=0.245 Sum_probs=57.0
Q ss_pred HH-cCCcEEEEcCCCccCCCCCcc-hHHHHHHHHHHcCCCceEEEecCCCCHHHHHH----HHHhCcCEEEecHHHHHHh
Q 017781 239 VQ-AGAAGIIVSNHGARQLDYVPA-TIMALEEVVKATQGRIPVFLDGGVRRGTDVFK----ALALGASGIFIGRPVVYSL 312 (366)
Q Consensus 239 ~~-aGad~I~vs~~gg~~~~~~~~-~~~~l~~i~~~~~~~i~vi~~GGI~~~~dv~k----alalGAd~V~igr~~l~~l 312 (366)
.+ .|+++|.+.++.|....-... ..+++..+++.+.+++|||+.=|-.+-.|+++ |-.+|||+|++-.|+.+..
T Consensus 34 ~~~~Gv~gi~v~GstGE~~~Ls~eEr~~~~~~~~~~~~~~~~viagvg~~~t~~ai~~a~~a~~~Gad~v~v~~P~y~~~ 113 (293)
T PRK04147 34 IEKQGIDGLYVGGSTGEAFLLSTEEKKQVLEIVAEEAKGKVKLIAQVGSVNTAEAQELAKYATELGYDAISAVTPFYYPF 113 (293)
T ss_pred HhcCCCCEEEECCCccccccCCHHHHHHHHHHHHHHhCCCCCEEecCCCCCHHHHHHHHHHHHHcCCCEEEEeCCcCCCC
Confidence 45 799999998877643222222 23455666677777899998666566666653 4458999999999987642
Q ss_pred hhcCHHHHHHHHHHHH
Q 017781 313 AAEGEKGVRRVLEMLR 328 (366)
Q Consensus 313 ~~~G~~gv~~~~~~l~ 328 (366)
.++++.++++.+.
T Consensus 114 ---~~~~l~~~f~~va 126 (293)
T PRK04147 114 ---SFEEICDYYREII 126 (293)
T ss_pred ---CHHHHHHHHHHHH
Confidence 2455554444443
|
|
| >cd03316 MR_like Mandelate racemase (MR)-like subfamily of the enolase superfamily | Back alignment and domain information |
|---|
Probab=94.04 E-value=0.69 Score=45.44 Aligned_cols=119 Identities=18% Similarity=0.195 Sum_probs=77.0
Q ss_pred CHHHHHHHHHHHHHcCCCEEEEecCCCCCcchhHHHhhhcCCCCccccccccccccCCCccccchhhHHHhhhccCCCCC
Q 017781 134 DRNVVAQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLTLKNFQGLDLGKMDEANDSGLAAYVAGQIDRSLS 213 (366)
Q Consensus 134 d~~~~~~~l~ra~~~G~~ai~vtvd~p~~g~r~~d~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~ 213 (366)
+.+.+.+.++++.+.|++++-+.++...... .....+
T Consensus 139 ~~~~~~~~a~~~~~~Gf~~~Kik~g~~~~~~-------------------------------------------~~~~~d 175 (357)
T cd03316 139 SPEELAEEAKRAVAEGFTAVKLKVGGPDSGG-------------------------------------------EDLRED 175 (357)
T ss_pred CHHHHHHHHHHHHHcCCCEEEEcCCCCCcch-------------------------------------------HHHHHH
Confidence 4666777777888899999877665321000 001224
Q ss_pred HHHHHHHHHhc--CCCEEEEec--cCHHH--------HHcCCcEEEEcCCCccCCCCCcchHHHHHHHHHHcCCCceEEE
Q 017781 214 WKDVKWLQTIT--KLPILVKGV--LTAED--------VQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFL 281 (366)
Q Consensus 214 ~~~i~~lr~~~--~~pv~vK~v--~~~~d--------~~aGad~I~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~i~vi~ 281 (366)
.+.++.+|+.+ +.++.+..- .+.++ .+.|+++|- +. ..+..++.+.++++.. .+||++
T Consensus 176 ~~~v~~ir~~~g~~~~l~vDaN~~~~~~~a~~~~~~l~~~~i~~iE-------qP-~~~~~~~~~~~l~~~~--~ipi~~ 245 (357)
T cd03316 176 LARVRAVREAVGPDVDLMVDANGRWDLAEAIRLARALEEYDLFWFE-------EP-VPPDDLEGLARLRQAT--SVPIAA 245 (357)
T ss_pred HHHHHHHHHhhCCCCEEEEECCCCCCHHHHHHHHHHhCccCCCeEc-------CC-CCccCHHHHHHHHHhC--CCCEEe
Confidence 56677777776 456666642 34444 234555442 10 1122567778888776 799999
Q ss_pred ecCCCCHHHHHHHHHhC-cCEEEec
Q 017781 282 DGGVRRGTDVFKALALG-ASGIFIG 305 (366)
Q Consensus 282 ~GGI~~~~dv~kalalG-Ad~V~ig 305 (366)
+..+.+..|+.+++..| +|.|++-
T Consensus 246 dE~~~~~~~~~~~i~~~~~d~v~~k 270 (357)
T cd03316 246 GENLYTRWEFRDLLEAGAVDIIQPD 270 (357)
T ss_pred ccccccHHHHHHHHHhCCCCEEecC
Confidence 99999999999999977 8888775
|
Enzymes of this subgroup share three conserved carboxylate ligands for the essential divalent metal ion (usually Mg2+), two aspartates and a glutamate, and conserved catalytic residues, a Lys-X-Lys motif and a conserved histidine-aspartate dyad. Members of the MR subgroup are mandelate racemase, D-glucarate/L-idarate dehydratase (GlucD), D-altronate/D-mannonate dehydratase , D-galactonate dehydratase (GalD) , D-gluconate dehydratase (GlcD), and L-rhamnonate dehydratase (RhamD). |
| >PRK03170 dihydrodipicolinate synthase; Provisional | Back alignment and domain information |
|---|
Probab=94.00 E-value=5.9 Score=37.83 Aligned_cols=84 Identities=14% Similarity=0.011 Sum_probs=53.2
Q ss_pred CceEecccccccccCChhhHHHHHHHHHcCCceec-----CCCCCCCHHHHhc-------cCC--CceEEEeeecCCHHH
Q 017781 72 MPIMIAPTAMQKMAHPEGEYATARAASAAGTIMTL-----SSWSTSSVEEVAS-------TGP--GIRFFQLYVYKDRNV 137 (366)
Q Consensus 72 ~Pi~iApm~~~~l~~~~~e~~la~aa~~~G~~~~v-----s~~~~~~~e~i~~-------~~~--~~~~~Qly~~~d~~~ 137 (366)
.|.++.|+.-.+-...++-..+.+-+.+.|+-..+ |++.+.+.+|..+ ..+ .+.+.++.. .+.+.
T Consensus 6 ~~~~~TPf~~dg~iD~~~l~~~i~~l~~~Gv~gi~~~Gs~GE~~~ls~~Er~~~~~~~~~~~~~~~~vi~gv~~-~~~~~ 84 (292)
T PRK03170 6 ITALVTPFKEDGSVDFAALRKLVDYLIANGTDGLVVVGTTGESPTLTHEEHEELIRAVVEAVNGRVPVIAGTGS-NSTAE 84 (292)
T ss_pred eeeeeCCcCCCCCcCHHHHHHHHHHHHHcCCCEEEECCcCCccccCCHHHHHHHHHHHHHHhCCCCcEEeecCC-chHHH
Confidence 46667787544334444456778888888876543 3344566665432 222 355566542 45667
Q ss_pred HHHHHHHHHHcCCCEEEEe
Q 017781 138 VAQLVRRAERAGFKAIALT 156 (366)
Q Consensus 138 ~~~~l~ra~~~G~~ai~vt 156 (366)
+.++++.++++|++++++.
T Consensus 85 ~i~~a~~a~~~G~d~v~~~ 103 (292)
T PRK03170 85 AIELTKFAEKAGADGALVV 103 (292)
T ss_pred HHHHHHHHHHcCCCEEEEC
Confidence 7788899999999999873
|
|
| >PF01081 Aldolase: KDPG and KHG aldolase; InterPro: IPR000887 4-Hydroxy-2-oxoglutarate aldolase (4 | Back alignment and domain information |
|---|
Probab=93.98 E-value=0.27 Score=44.57 Aligned_cols=77 Identities=27% Similarity=0.295 Sum_probs=50.6
Q ss_pred CHHHHHHHHHhc-CCCEEEEeccCHHH----HHcCCcEEEEcCCCccCCCCCcchHHHHHHHHHHcCCCceEEEecCCCC
Q 017781 213 SWKDVKWLQTIT-KLPILVKGVLTAED----VQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRR 287 (366)
Q Consensus 213 ~~~~i~~lr~~~-~~pv~vK~v~~~~d----~~aGad~I~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~i~vi~~GGI~~ 287 (366)
..+.|+.+++.. ++-|.+..|.+.++ .++||++++--+ ..-+.+..+.+. ++|++ =|+.|
T Consensus 46 a~~~I~~l~~~~p~~~vGAGTV~~~e~a~~a~~aGA~FivSP~----------~~~~v~~~~~~~---~i~~i--PG~~T 110 (196)
T PF01081_consen 46 ALEAIEALRKEFPDLLVGAGTVLTAEQAEAAIAAGAQFIVSPG----------FDPEVIEYAREY---GIPYI--PGVMT 110 (196)
T ss_dssp HHHHHHHHHHHHTTSEEEEES--SHHHHHHHHHHT-SEEEESS------------HHHHHHHHHH---TSEEE--EEESS
T ss_pred HHHHHHHHHHHCCCCeeEEEeccCHHHHHHHHHcCCCEEECCC----------CCHHHHHHHHHc---CCccc--CCcCC
Confidence 356788898887 44455556788887 999999996321 133444444432 56655 47999
Q ss_pred HHHHHHHHHhCcCEEEe
Q 017781 288 GTDVFKALALGASGIFI 304 (366)
Q Consensus 288 ~~dv~kalalGAd~V~i 304 (366)
+.++.+|+.+||+.|=+
T Consensus 111 ptEi~~A~~~G~~~vK~ 127 (196)
T PF01081_consen 111 PTEIMQALEAGADIVKL 127 (196)
T ss_dssp HHHHHHHHHTT-SEEEE
T ss_pred HHHHHHHHHCCCCEEEE
Confidence 99999999999999865
|
1.3.16 from EC) (KHG-aldolase) catalyzes the interconversion of 4-hydroxy-2-oxoglutarate into pyruvate and glyoxylate. Phospho-2-dehydro-3-deoxygluconate aldolase (4.1.2.14 from EC) (KDPG-aldolase) catalyzes the interconversion of 6-phospho-2-dehydro-3-deoxy-D-gluconate into pyruvate and glyceraldehyde 3-phosphate. These two enzymes are structurally and functionally related []. They are both homotrimeric proteins of approximately 220 amino-acid residues. They are class I aldolases whose catalytic mechanism involves the formation of a Schiff-base intermediate between the substrate and the epsilon-amino group of a lysine residue. In both enzymes, an arginine is required for catalytic activity.; GO: 0003824 catalytic activity, 0008152 metabolic process; PDB: 3VCR_A 1FQ0_A 1EUN_A 1EUA_B 1FWR_A 2C0A_B 1WBH_A 1WAU_A 2YW3_B 2YW4_A .... |
| >KOG4201 consensus Anthranilate synthase component II [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=93.98 E-value=0.23 Score=45.27 Aligned_cols=70 Identities=14% Similarity=0.242 Sum_probs=51.8
Q ss_pred HHcCCcEEEEcCCCccCCCCCcchHHHHHHHHHHcCCCceEEEecCCCCHHHHHHHHHhCcCEEEecHHHHHH
Q 017781 239 VQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFIGRPVVYS 311 (366)
Q Consensus 239 ~~aGad~I~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~i~vi~~GGI~~~~dv~kalalGAd~V~igr~~l~~ 311 (366)
.+.|+..|-|.|+.-.......++ -..+.+-.+.++-+++-+||.|+.|++++-..|..+|.+|-.++..
T Consensus 203 leiGakvvGvNNRnL~sFeVDlst---TskL~E~i~kDvilva~SGi~tpdDia~~q~~GV~avLVGEslmk~ 272 (289)
T KOG4201|consen 203 LEIGAKVVGVNNRNLHSFEVDLST---TSKLLEGIPKDVILVALSGIFTPDDIAKYQKAGVKAVLVGESLMKQ 272 (289)
T ss_pred HHhCcEEEeecCCccceeeechhh---HHHHHhhCccceEEEeccCCCCHHHHHHHHHcCceEEEecHHHHhc
Confidence 778998888877543222222222 2333344556788999999999999999999999999999998874
|
|
| >cd00954 NAL N-Acetylneuraminic acid aldolase, also called N-acetylneuraminate lyase (NAL), which catalyses the reversible aldol reaction of N-acetyl-D-mannosamine and pyruvate to give N-acetyl-D-neuraminic acid (D-sialic acid) | Back alignment and domain information |
|---|
Probab=93.97 E-value=0.29 Score=46.82 Aligned_cols=88 Identities=16% Similarity=0.208 Sum_probs=56.2
Q ss_pred HHc-CCcEEEEcCCCccCCCCCcc-hHHHHHHHHHHcCCCceEEEecCCCCHHHHH----HHHHhCcCEEEecHHHHHHh
Q 017781 239 VQA-GAAGIIVSNHGARQLDYVPA-TIMALEEVVKATQGRIPVFLDGGVRRGTDVF----KALALGASGIFIGRPVVYSL 312 (366)
Q Consensus 239 ~~a-Gad~I~vs~~gg~~~~~~~~-~~~~l~~i~~~~~~~i~vi~~GGI~~~~dv~----kalalGAd~V~igr~~l~~l 312 (366)
.+. |+++|.+.++.|....-... ..+.+..+++.+.+++|||+.=|-.+-.|++ .|-.+|||+|++-.|+.+..
T Consensus 31 ~~~~Gv~gi~~~GstGE~~~Lt~~Er~~~~~~~~~~~~~~~~viagv~~~~~~~ai~~a~~a~~~Gad~v~~~~P~y~~~ 110 (288)
T cd00954 31 IEKQGVDGLYVNGSTGEGFLLSVEERKQIAEIVAEAAKGKVTLIAHVGSLNLKESQELAKHAEELGYDAISAITPFYYKF 110 (288)
T ss_pred HhcCCCCEEEECcCCcCcccCCHHHHHHHHHHHHHHhCCCCeEEeccCCCCHHHHHHHHHHHHHcCCCEEEEeCCCCCCC
Confidence 457 99999998876643222222 2345555666677789998844434444444 34458999999999987642
Q ss_pred hhcCHHHHHHHHHHHHH
Q 017781 313 AAEGEKGVRRVLEMLRE 329 (366)
Q Consensus 313 ~~~G~~gv~~~~~~l~~ 329 (366)
.++++.++++.+.+
T Consensus 111 ---~~~~i~~~~~~v~~ 124 (288)
T cd00954 111 ---SFEEIKDYYREIIA 124 (288)
T ss_pred ---CHHHHHHHHHHHHH
Confidence 45666665555544
|
It has a widespread application as biocatalyst for the synthesis of sialic acid and its derivatives. This enzyme has been shown to be quite specific for pyruvate as the donor, but flexible to a variety of D- and, to some extent, L-hexoses and pentoses as acceptor substrates. NAL is member of dihydrodipicolinate synthase family that comprises several pyruvate-dependent class I aldolases. |
| >PRK07807 inosine 5-monophosphate dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=93.95 E-value=0.18 Score=51.89 Aligned_cols=244 Identities=15% Similarity=0.225 Sum_probs=127.5
Q ss_pred cccceeeeccccC-CC-CCCccceeEcCcccCCceEecccccccccCChhhHHHHHHHHHcCCceecCCCCCCCHHHHhc
Q 017781 42 AFSRILFRPRILI-DV-SKIDMNTTVLGFKISMPIMIAPTAMQKMAHPEGEYATARAASAAGTIMTLSSWSTSSVEEVAS 119 (366)
Q Consensus 42 ~f~~i~l~pr~l~-~~-~~vd~st~l~g~~l~~Pi~iApm~~~~l~~~~~e~~la~aa~~~G~~~~vs~~~~~~~e~i~~ 119 (366)
.|||+.|+|.... .. +++|++|++ +..+..||+.|||...+ +..||.+.++.|...++.. +.+.++..+
T Consensus 14 tfddvll~p~~~~~~~~~~v~~~t~~-~~~l~~Pi~sa~Mdtvt------~~~MAiaLAr~GGiGvih~--nl~~~~q~~ 84 (479)
T PRK07807 14 TYDDVFLVPSRSDVGSRFDVDLSTAD-GTGTTIPLVVANMTAVA------GRRMAETVARRGGLVVLPQ--DIPIDVVAE 84 (479)
T ss_pred CccceEecccccCccCCCceecccCC-CCccccceeecCCcchh------HHHHHHHHHHCCCceEeeC--CCCHHHHHH
Confidence 5999999998764 44 489999974 88999999999996543 7899999999998777753 445544332
Q ss_pred cC---C-CceEE-EeeecCCHHHHHHHHHHHHHcCCCEEEEecCCC-CCc-chhHHHhhhcCCCCccccccccccccCCC
Q 017781 120 TG---P-GIRFF-QLYVYKDRNVVAQLVRRAERAGFKAIALTVDTP-RLG-RREADIKNRFTLPPFLTLKNFQGLDLGKM 192 (366)
Q Consensus 120 ~~---~-~~~~~-Qly~~~d~~~~~~~l~ra~~~G~~ai~vtvd~p-~~g-~r~~d~~~~~~~p~~~~~~~~~~~~~~~~ 192 (366)
.. . ..... +...-.......+.++...+.++..+.|.-+.- ..| --.+|++.. +.......+.......+
T Consensus 85 ~l~~VKv~~iMi~~pvtv~~d~tv~eA~~~m~~~~~s~l~VVD~~gklvGIVT~rDL~~~---~~~~~V~diMt~~~itV 161 (479)
T PRK07807 85 VVAWVKSRDLVFDTPVTLSPDDTVGDALALLPKRAHGAVVVVDEEGRPVGVVTEADCAGV---DRFTQVRDVMSTDLVTL 161 (479)
T ss_pred HHhhcccccccccCCeEECCCCCHHHHHHHHHhcCCceEEEECCCCeEEEEEeHHHHhcC---ccCCCHHHhccCCceEE
Confidence 11 1 00000 000011222345566666677777766642210 001 112233210 00000000000000000
Q ss_pred cc-ccchhhHHHhhh-------ccC------CCCCHHHHHHHHHhcCCCE-------EEEec--cCHH--H-----HHcC
Q 017781 193 DE-ANDSGLAAYVAG-------QID------RSLSWKDVKWLQTITKLPI-------LVKGV--LTAE--D-----VQAG 242 (366)
Q Consensus 193 ~~-~~~~~~~~~~~~-------~~d------~~~~~~~i~~lr~~~~~pv-------~vK~v--~~~~--d-----~~aG 242 (366)
.. .........+.. -.| .-.+..+|...... + |. .+... .+.+ + .++|
T Consensus 162 ~~d~sL~eAl~lM~~~~i~~LPVVD~~g~lvGIIT~~DIl~~~~~-~-~~~~~~g~l~V~aav~~~~~~~~~a~~Lv~aG 239 (479)
T PRK07807 162 PAGTDPREAFDLLEAARVKLAPVVDADGRLVGVLTRTGALRATIY-T-PAVDAAGRLRVAAAVGINGDVAAKARALLEAG 239 (479)
T ss_pred CCCCcHHHHHHHHHhcCCCEEEEEcCCCeEEEEEEHHHHHHHhhC-C-chhhhhhccchHhhhccChhHHHHHHHHHHhC
Confidence 00 000000000000 000 01123333222221 1 11 11100 1111 1 8899
Q ss_pred CcEEEEcCCCccCCCCCcchHHHHHHHHHHcCCCceEEEecCCCCHHHHHHHHHhCcCEEEec
Q 017781 243 AAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFIG 305 (366)
Q Consensus 243 ad~I~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~i~vi~~GGI~~~~dv~kalalGAd~V~ig 305 (366)
+|.|++....|. +...++.+++|++..+ +++||+ |.|.|.+.+..++.+|||+|-+|
T Consensus 240 vd~i~~D~a~~~----~~~~~~~i~~ik~~~p-~~~v~a-gnv~t~~~a~~l~~aGad~v~vg 296 (479)
T PRK07807 240 VDVLVVDTAHGH----QEKMLEALRAVRALDP-GVPIVA-GNVVTAEGTRDLVEAGADIVKVG 296 (479)
T ss_pred CCEEEEeccCCc----cHHHHHHHHHHHHHCC-CCeEEe-eccCCHHHHHHHHHcCCCEEEEC
Confidence 999999865443 4567788999988764 577776 89999999999999999998744
|
|
| >cd04735 OYE_like_4_FMN Old yellow enzyme (OYE)-related FMN binding domain, group 4 | Back alignment and domain information |
|---|
Probab=93.92 E-value=3.1 Score=41.10 Aligned_cols=210 Identities=16% Similarity=0.135 Sum_probs=104.4
Q ss_pred eeEcC-cccCCceEecccccccccCChh---h--HHHHHHHHHcCCceecCCCCCCCHHHHhccCCCceEEEeeecCCHH
Q 017781 63 TTVLG-FKISMPIMIAPTAMQKMAHPEG---E--YATARAASAAGTIMTLSSWSTSSVEEVASTGPGIRFFQLYVYKDRN 136 (366)
Q Consensus 63 t~l~g-~~l~~Pi~iApm~~~~l~~~~~---e--~~la~aa~~~G~~~~vs~~~~~~~e~i~~~~~~~~~~Qly~~~d~~ 136 (366)
.+|.+ .++++-|++|||+.. ....+| + ...-+.-++ |+++++.+....+.+. ...+ ...-++.....+
T Consensus 5 ~~ig~g~~lkNRiv~apm~~~-~~~~~G~~t~~~~~yy~~rA~-g~glIi~e~~~v~~~~--~~~~--~~~~~~~d~~i~ 78 (353)
T cd04735 5 FTLKNGVTLKNRFVMAPMTTY-SSNPDGTITDDELAYYQRRAG-GVGMVITGATYVSPSG--IGFE--GGFSADDDSDIP 78 (353)
T ss_pred EEcCCCeEEeCcceecccccC-ccCCCCCCCHHHHHHHHHHhC-CCCEEEECceEECccc--CcCC--CCceecChhhhH
Confidence 46776 999999999999632 232333 2 222222222 4666665543322111 1111 112233333456
Q ss_pred HHHHHHHHHHHcCCCEEEEecCCCCCcchhHH-HhhhcCCCCccccccccccccCCCccccchhhHHHhhhccCCCCCHH
Q 017781 137 VVAQLVRRAERAGFKAIALTVDTPRLGRREAD-IKNRFTLPPFLTLKNFQGLDLGKMDEANDSGLAAYVAGQIDRSLSWK 215 (366)
Q Consensus 137 ~~~~~l~ra~~~G~~ai~vtvd~p~~g~r~~d-~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~ 215 (366)
..+++.+.+.+.|++.+ +-+..+ |..... ...+ ..| +.... +. . ..........++.+
T Consensus 79 ~~~~l~~~vh~~G~~i~-~QL~h~--G~~~~~~~~~~-~~~--~~ps~--------~~--~-----~~~~~~~p~~mt~~ 137 (353)
T cd04735 79 GLRKLAQAIKSKGAKAI-LQIFHA--GRMANPALVPG-GDV--VSPSA--------IA--A-----FRPGAHTPRELTHE 137 (353)
T ss_pred HHHHHHHHHHhCCCeEE-EEecCC--CCCCCccccCC-Cce--ecCCC--------Cc--c-----cCCCCCCCccCCHH
Confidence 67888889999998754 444432 211100 0000 000 00000 00 0 00000012346778
Q ss_pred HHHHHHHhcCCCEEEEeccCHHH-HHcCCcEEEEcC-CCcc--C----------C-CCCc------chHHHHHHHHHHcC
Q 017781 216 DVKWLQTITKLPILVKGVLTAED-VQAGAAGIIVSN-HGAR--Q----------L-DYVP------ATIMALEEVVKATQ 274 (366)
Q Consensus 216 ~i~~lr~~~~~pv~vK~v~~~~d-~~aGad~I~vs~-~gg~--~----------~-~~~~------~~~~~l~~i~~~~~ 274 (366)
+|+++.+.+- ..... .++|+|+|.++. ||.- | - .+|- -..+.+..++++++
T Consensus 138 eI~~ii~~f~--------~aA~~a~~aGfDgVeih~ahGyLl~qFlsp~~N~R~D~yGGslenR~r~~~eii~~vr~~vg 209 (353)
T cd04735 138 EIEDIIDAFG--------EATRRAIEAGFDGVEIHGANGYLIQQFFSPHSNRRTDEWGGSLENRMRFPLAVVKAVQEVID 209 (353)
T ss_pred HHHHHHHHHH--------HHHHHHHHcCCCEEEEccccchHHHHhcCCccCCCCcccCCcHHHHHHHHHHHHHHHHHHhc
Confidence 8888877642 01122 789999999975 4320 1 1 1221 13466777777775
Q ss_pred ----CCceEEE--------ecCCC--CHHHHHHHHH-hCcCEEEecHH
Q 017781 275 ----GRIPVFL--------DGGVR--RGTDVFKALA-LGASGIFIGRP 307 (366)
Q Consensus 275 ----~~i~vi~--------~GGI~--~~~dv~kala-lGAd~V~igr~ 307 (366)
.+++|.. .||+. ...++++.|. +|+|.+-+...
T Consensus 210 ~~~~~~~~v~~R~s~~~~~~~g~~~ee~~~i~~~L~~~GvD~I~Vs~g 257 (353)
T cd04735 210 KHADKDFILGYRFSPEEPEEPGIRMEDTLALVDKLADKGLDYLHISLW 257 (353)
T ss_pred cccCCCceEEEEECcccccCCCCCHHHHHHHHHHHHHcCCCEEEeccC
Confidence 4555443 45654 2335567775 79999998753
|
Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Other members of OYE family include trimethylamine dehydrogenase, 2,4-dienoyl-CoA reductase, enoate reductase, pentaerythriol tetranitrate reductase, xenobiotic reductase, and morphinone reductase. |
| >PRK07107 inosine 5-monophosphate dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=93.91 E-value=0.18 Score=52.18 Aligned_cols=246 Identities=17% Similarity=0.171 Sum_probs=124.7
Q ss_pred hcccceeeeccccC---CCCCCccceeEc--------CcccCCceEecccccccccCChhhHHHHHHHHHcCCceecCCC
Q 017781 41 NAFSRILFRPRILI---DVSKIDMNTTVL--------GFKISMPIMIAPTAMQKMAHPEGEYATARAASAAGTIMTLSSW 109 (366)
Q Consensus 41 ~~f~~i~l~pr~l~---~~~~vd~st~l~--------g~~l~~Pi~iApm~~~~l~~~~~e~~la~aa~~~G~~~~vs~~ 109 (366)
-.|||+.|+|.... ..+++|++|.+- +.++..|+..|+|.... +-+||.+..+.|-..++..
T Consensus 10 ~tfddvll~P~~~~~~~~~~~v~~~t~~~~~~~~~~~~i~l~iP~~Satmdtvt------gdalAiala~~gG~g~Ih~- 82 (502)
T PRK07107 10 RTFSEYLLVPGLSSKECVPANVSLKTPLVKFKKGEESAITLNIPLVSAIMQSVS------DDNMAIALAREGGLSFIFG- 82 (502)
T ss_pred ccccceEEccCCCCCCcCccceeccccccccccCcccccccCCChHHHHHHHHh------hHHHHHHHHHcCCCeEeeC-
Confidence 46999999998763 457899998875 45688899999985432 6689999999887777642
Q ss_pred CCCCHHHHhcc-------C----CCceEEEeeecCCHHHHHHHHHHHHHcCCCEEEEecCC----CCCc-chhHHHhhhc
Q 017781 110 STSSVEEVAST-------G----PGIRFFQLYVYKDRNVVAQLVRRAERAGFKAIALTVDT----PRLG-RREADIKNRF 173 (366)
Q Consensus 110 ~~~~~e~i~~~-------~----~~~~~~Qly~~~d~~~~~~~l~ra~~~G~~ai~vtvd~----p~~g-~r~~d~~~~~ 173 (366)
++++|+-++. . ..+. .+. ....+.+.++...+.+...+.|.=+. -..| --.+|++...
T Consensus 83 -n~sie~qa~lV~kVk~~~~g~i~~~~--tV~---pd~tl~eAl~~m~~~~~~~vpVVD~~~~~gkLvGIVT~~DLr~~~ 156 (502)
T PRK07107 83 -SQSIESEAAMVRRVKNYKAGFVVSDS--NLT---PDNTLADVLDLKEKTGHSTVAVTEDGTAHGKLLGIVTSRDYRISR 156 (502)
T ss_pred -CCCHHHHHHHHHHHHHHhcCCcCCCC--EeC---CCCcHHHHHHHHHhcCCCeEEEEeCCCcCCEEEEEEEcHHhhccc
Confidence 3455543221 1 0121 122 22334556666666677666654220 0000 0123332100
Q ss_pred CCCCccccccccccccCCC--c-cccchhhHHHhhh-------ccC------CCCCHHHHHHHH-------HhcCCCEEE
Q 017781 174 TLPPFLTLKNFQGLDLGKM--D-EANDSGLAAYVAG-------QID------RSLSWKDVKWLQ-------TITKLPILV 230 (366)
Q Consensus 174 ~~p~~~~~~~~~~~~~~~~--~-~~~~~~~~~~~~~-------~~d------~~~~~~~i~~lr-------~~~~~pv~v 230 (366)
..+. .....+.......+ . ........+.+.. -.| .-.+++++...+ +.-+-.++.
T Consensus 157 ~~~~-~~V~dIMt~~~~~itv~~d~~l~eAl~lM~e~~i~~LPVVD~~g~LvGIIT~~Dilk~~~~P~a~~d~~grL~V~ 235 (502)
T PRK07107 157 MSLD-TKVKDFMTPFEKLVTANEGTTLKEANDIIWDHKLNTLPIVDKNGNLVYLVFRKDYDSHKENPLELLDSSKRYVVG 235 (502)
T ss_pred cCCC-CCHHHHhCCCCCeEEECCCCcHHHHHHHHHHcCCCEEEEEcCCCeEEEEEEhHHHHhcccChhhhhhhccCeeee
Confidence 0000 00000000000000 0 0000000000000 000 011333332221 111112222
Q ss_pred EeccCHH--H-----HHcCCcEEEEcCCCccCCCCCcchHHHHHHHHHHcCCCceEEEecCCCCHHHHHHHHHhCcCEEE
Q 017781 231 KGVLTAE--D-----VQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIF 303 (366)
Q Consensus 231 K~v~~~~--d-----~~aGad~I~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~i~vi~~GGI~~~~dv~kalalGAd~V~ 303 (366)
..+...+ + .++|+|.|+|.+..|. ..-.++.+.++++..+++++|+ .|-|-+++++..++.+|||++-
T Consensus 236 ~av~~~~~~~ra~~Lv~aGvd~i~vd~a~g~----~~~~~~~i~~ir~~~~~~~~V~-aGnV~t~e~a~~li~aGAd~I~ 310 (502)
T PRK07107 236 AGINTRDYAERVPALVEAGADVLCIDSSEGY----SEWQKRTLDWIREKYGDSVKVG-AGNVVDREGFRYLAEAGADFVK 310 (502)
T ss_pred eccChhhHHHHHHHHHHhCCCeEeecCcccc----cHHHHHHHHHHHHhCCCCceEE-eccccCHHHHHHHHHcCCCEEE
Confidence 2332112 1 8899999998753332 1224678888888765345444 4889999999999999999998
Q ss_pred ec
Q 017781 304 IG 305 (366)
Q Consensus 304 ig 305 (366)
+|
T Consensus 311 vg 312 (502)
T PRK07107 311 VG 312 (502)
T ss_pred EC
Confidence 74
|
|
| >cd04733 OYE_like_2_FMN Old yellow enzyme (OYE)-related FMN binding domain, group 2 | Back alignment and domain information |
|---|
Probab=93.91 E-value=1.6 Score=42.77 Aligned_cols=211 Identities=17% Similarity=0.150 Sum_probs=104.6
Q ss_pred eeEc-CcccCCceEecccccccccCChh-----hHHHHHHHHHcCCceecCCCCCCCHHHHhccCCCceEEE--eeecCC
Q 017781 63 TTVL-GFKISMPIMIAPTAMQKMAHPEG-----EYATARAASAAGTIMTLSSWSTSSVEEVASTGPGIRFFQ--LYVYKD 134 (366)
Q Consensus 63 t~l~-g~~l~~Pi~iApm~~~~l~~~~~-----e~~la~aa~~~G~~~~vs~~~~~~~e~i~~~~~~~~~~Q--ly~~~d 134 (366)
.+|. |+++++-|+++||+.. ..+.++ ..+.-..-++-|+++++.+......+. ...+. ...| +|-...
T Consensus 5 ~~i~~~~~lkNRi~~~p~~~~-~~~~~g~~~~~~~~~y~~rA~gG~glii~~~~~v~~~~--~~~~~-~~~~~~~~~d~~ 80 (338)
T cd04733 5 LTLPNGATLPNRLAKAAMSER-LADGRGLPTPELIRLYRRWAEGGIGLIITGNVMVDPRH--LEEPG-IIGNVVLESGED 80 (338)
T ss_pred eEcCCCcEEcccceecccccc-cccCCCCCCHHHHHHHHHHhCCCceEEEEeeEEECccc--ccCCC-cCCCcccCCHHH
Confidence 4677 4999999999999632 222332 234444444457888765543322111 11110 0012 232222
Q ss_pred HHHHHHHHHHHHHcCCCEEEEecCCCCCcchhHHHhhhcCCCCccccccccccccCCCccccchhhHHHhhhccCCCCCH
Q 017781 135 RNVVAQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLTLKNFQGLDLGKMDEANDSGLAAYVAGQIDRSLSW 214 (366)
Q Consensus 135 ~~~~~~~l~ra~~~G~~ai~vtvd~p~~g~r~~d~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~ 214 (366)
-...+++.+.+++.|++.++ -+.. .|.+...-... .|...+ .+.. .. .. .. .......++.
T Consensus 81 i~~~~~l~~~vh~~G~~~~~-Ql~h--~G~~~~~~~~~--~~~~ps----------~~~~-~~-~~-~~-~~~~p~~mt~ 141 (338)
T cd04733 81 LEAFREWAAAAKANGALIWA-QLNH--PGRQSPAGLNQ--NPVAPS----------VALD-PG-GL-GK-LFGKPRAMTE 141 (338)
T ss_pred HHHHHHHHHHHHhcCCEEEE-EccC--CCcCCCccCCC--CCcCCC----------CCcC-cc-cc-cc-cCCCCCcCCH
Confidence 34567777888889987643 3332 23221100000 000000 0000 00 00 00 0001124577
Q ss_pred HHHHHHHHhcCCCEEEEeccCHHH-HHcCCcEEEEcCCCcc---C----------CCCCcc-------hHHHHHHHHHHc
Q 017781 215 KDVKWLQTITKLPILVKGVLTAED-VQAGAAGIIVSNHGAR---Q----------LDYVPA-------TIMALEEVVKAT 273 (366)
Q Consensus 215 ~~i~~lr~~~~~pv~vK~v~~~~d-~~aGad~I~vs~~gg~---~----------~~~~~~-------~~~~l~~i~~~~ 273 (366)
++|+++.+.+- ..... .++|.|+|.++...|. | -.+|-+ ..+.+.+|++++
T Consensus 142 ~eI~~~i~~~~--------~aA~ra~~aGfDgVeih~a~gyLl~qFlsp~~N~R~D~yGGslenR~rf~~EiI~aIR~av 213 (338)
T cd04733 142 EEIEDVIDRFA--------HAARLAQEAGFDGVQIHAAHGYLLSQFLSPLTNKRTDEYGGSLENRARLLLEIYDAIRAAV 213 (338)
T ss_pred HHHHHHHHHHH--------HHHHHHHHcCCCEEEEchhhhhHHHHhcCCcCCCCCccCCCCHHHHHHHHHHHHHHHHHHc
Confidence 77777777542 01112 8899999999753332 1 112211 356788888888
Q ss_pred CCCceEEEe--------cCCCCHH---HHHHHHH-hCcCEEEec
Q 017781 274 QGRIPVFLD--------GGVRRGT---DVFKALA-LGASGIFIG 305 (366)
Q Consensus 274 ~~~i~vi~~--------GGI~~~~---dv~kala-lGAd~V~ig 305 (366)
+++++|.+. +|. +.+ ++++.|+ +|.|.+-+.
T Consensus 214 G~d~~v~vris~~~~~~~g~-~~eea~~ia~~Le~~Gvd~iev~ 256 (338)
T cd04733 214 GPGFPVGIKLNSADFQRGGF-TEEDALEVVEALEEAGVDLVELS 256 (338)
T ss_pred CCCCeEEEEEcHHHcCCCCC-CHHHHHHHHHHHHHcCCCEEEec
Confidence 777777653 454 444 4566665 699998764
|
Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Other members of OYE family include trimethylamine dehydrogenase, 2,4-dienoyl-CoA reductase, enoate reductase, pentaerythriol tetranitrate reductase, xenobiotic reductase, and morphinone reductase. |
| >PF00724 Oxidored_FMN: NADH:flavin oxidoreductase / NADH oxidase family; InterPro: IPR001155 The TIM-barrel fold is a closed barrel structure composed of an eight-fold repeat of beta-alpha units, where the eight parallel beta strands on the inside are covered by the eight alpha helices on the outside [] | Back alignment and domain information |
|---|
Probab=93.86 E-value=0.49 Score=46.52 Aligned_cols=87 Identities=21% Similarity=0.237 Sum_probs=48.4
Q ss_pred eeEcCcccCCceEecccccccccCChh------hHHHHHHHHHcCCceecCCCCCCCHHHHhccCCCceEEEeeecCCHH
Q 017781 63 TTVLGFKISMPIMIAPTAMQKMAHPEG------EYATARAASAAGTIMTLSSWSTSSVEEVASTGPGIRFFQLYVYKDRN 136 (366)
Q Consensus 63 t~l~g~~l~~Pi~iApm~~~~l~~~~~------e~~la~aa~~~G~~~~vs~~~~~~~e~i~~~~~~~~~~Qly~~~d~~ 136 (366)
.+|.+.++++-|++|||+.. ...+++ ....-+.-++-|+++++.+....+.+-. ..+.. .-++....-+
T Consensus 6 ~~ig~~~lkNRiv~apm~~~-~~~~~g~~~~~~~~~yy~~rA~GG~Glii~~~~~v~~~~~--~~~~~--~~i~~d~~i~ 80 (341)
T PF00724_consen 6 LKIGNLTLKNRIVMAPMTTN-MADPDGGVPTDRLIAYYERRAKGGAGLIITEATAVSPEGR--GFPGQ--PGIWDDEQIP 80 (341)
T ss_dssp EEETTEEESSSEEE----SS-TSCTTTTBCHHHHHHHHHHHHHTTTSEEEEEEEESSGGGS--SSTTS--EBSSSHHHHH
T ss_pred eeECCEEecCCeEECCCCCC-CcccCCCCcHHHHHHHHHHHhhcCCceEEecccccccccc--ccccc--chhchhhHHH
Confidence 57888999999999999643 333443 2455556667788888866544332211 12211 1122222234
Q ss_pred HHHHHHHHHHHcCCCEEE
Q 017781 137 VVAQLVRRAERAGFKAIA 154 (366)
Q Consensus 137 ~~~~~l~ra~~~G~~ai~ 154 (366)
..+++++.+++.|++.++
T Consensus 81 ~~k~l~~~vh~~Ga~i~~ 98 (341)
T PF00724_consen 81 GLKKLADAVHAHGAKIIA 98 (341)
T ss_dssp HHHHHHHHHHHTTSEEEE
T ss_pred HHHHHHHHHHhcCcccee
Confidence 567777888889988754
|
It is a widely distributed fold which has been found in many enzyme families that catalyse completely unrelated reactions []. The active site is always found at the C-terminal end of this domain. Proteins in this entry are a variety of NADH:flavin oxidoreductase/NADH oxidase enzymes, found mostly in bacteria or fungi, that contain a TIM-barrel fold. They commonly use FMN/FAD as cofactor and include: dimethylamine dehydrogenase trimethylamine dehydrogenase 12-oxophytodienoate reductase NADPH dehydrogenase NADH oxidase ; GO: 0010181 FMN binding, 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 3GKA_B 3P67_A 3F03_K 2ABA_A 1VYR_A 1GVO_A 3KFT_B 3P8I_A 1GVQ_A 3P74_A .... |
| >COG3142 CutC Uncharacterized protein involved in copper resistance [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=93.85 E-value=1.3 Score=40.90 Aligned_cols=121 Identities=18% Similarity=0.327 Sum_probs=72.7
Q ss_pred eecCCHHHHHHHHHHHHHcCCCEEEEecCCCCCcchhHHHhhhcCCCCccccccccccccCCCccccchhhHHHhhhccC
Q 017781 130 YVYKDRNVVAQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLTLKNFQGLDLGKMDEANDSGLAAYVAGQID 209 (366)
Q Consensus 130 y~~~d~~~~~~~l~ra~~~G~~ai~vtvd~p~~g~r~~d~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d 209 (366)
|...+.+.+.+-++.++++|++++++..-.+ |
T Consensus 67 Y~~~E~~iM~~DI~~~~~lG~~GVV~G~lt~------------------------------------------------d 98 (241)
T COG3142 67 YSDDELEIMLEDIRLARELGVQGVVLGALTA------------------------------------------------D 98 (241)
T ss_pred cChHHHHHHHHHHHHHHHcCCCcEEEeeecC------------------------------------------------C
Confidence 4344556789999999999999998754322 2
Q ss_pred CCCCHHHHHHHHHhc-CCCEEEEec----cCHHH-----HHcCCcEEEEcCCCccCCCCCcchHHHHHHHHHHcCCCceE
Q 017781 210 RSLSWKDVKWLQTIT-KLPILVKGV----LTAED-----VQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPV 279 (366)
Q Consensus 210 ~~~~~~~i~~lr~~~-~~pv~vK~v----~~~~d-----~~aGad~I~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~i~v 279 (366)
...+.+.++.+.+.. +++|.+--. .++.+ .+.|+.-|--| ||. ....-.++.|.++.+...+++.|
T Consensus 99 g~iD~~~le~Li~aA~gL~vTFHrAFD~~~d~~~ale~li~~Gv~RILTs--Gg~--~sa~eg~~~l~~li~~a~gri~I 174 (241)
T COG3142 99 GNIDMPRLEKLIEAAGGLGVTFHRAFDECPDPLEALEQLIELGVERILTS--GGK--ASALEGLDLLKRLIEQAKGRIII 174 (241)
T ss_pred CccCHHHHHHHHHHccCCceeeehhhhhcCCHHHHHHHHHHCCCcEEecC--CCc--CchhhhHHHHHHHHHHhcCCEEE
Confidence 233444555555544 344444322 23332 88888877644 442 22233445566666665678888
Q ss_pred EEecCCCCHHHHHHH-HHhCcCEEE
Q 017781 280 FLDGGVRRGTDVFKA-LALGASGIF 303 (366)
Q Consensus 280 i~~GGI~~~~dv~ka-lalGAd~V~ 303 (366)
++-|||+ ++.+... ...|+.-+-
T Consensus 175 m~GaGV~-~~N~~~l~~~tg~~e~H 198 (241)
T COG3142 175 MAGAGVR-AENIAELVLLTGVTEVH 198 (241)
T ss_pred EeCCCCC-HHHHHHHHHhcCchhhh
Confidence 8888885 5555555 557765443
|
|
| >TIGR00734 hisAF_rel hisA/hisF family protein | Back alignment and domain information |
|---|
Probab=93.85 E-value=0.2 Score=46.16 Aligned_cols=65 Identities=18% Similarity=0.145 Sum_probs=48.2
Q ss_pred HHcCCcEEEEcCCCccCCCCCcchHHHHHHHHHHcCCCceEEEecCCCCHHHHHHHHH--hCcCEEEecHHHH
Q 017781 239 VQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALA--LGASGIFIGRPVV 309 (366)
Q Consensus 239 ~~aGad~I~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~i~vi~~GGI~~~~dv~kala--lGAd~V~igr~~l 309 (366)
.+.|+|.+++--=-+. .+.+...+.+.++.+. +|+.+.||||+.+|+.+++. .||+-|.+|+..+
T Consensus 46 ~~~g~~~l~ivDLd~~--~~~~~n~~~i~~i~~~----~~v~vgGGirs~e~~~~~~~~l~~a~rvvigT~a~ 112 (221)
T TIGR00734 46 EEIGARFIYIADLDRI--VGLGDNFSLLSKLSKR----VELIADCGVRSPEDLETLPFTLEFASRVVVATETL 112 (221)
T ss_pred HHcCCCEEEEEEcccc--cCCcchHHHHHHHHhh----CcEEEcCccCCHHHHHHHHhhhccceEEeecChhh
Confidence 5568888876432221 1344577888888764 48999999999999999876 2799999999754
|
This alignment models a family of proteins found so far in three archaeal species: Methanobacterium thermoautotrophicum, Methanococcus jannaschii, and Archaeoglobus fulgidus. This protein is homologous to phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase (HisA) and, with lower similarity, to the cyclase HisF, both of which are enzymes of histidine biosynthesis. Each species with this protein also encodes HisA. The function of this protein is unknown. |
| >cd02929 TMADH_HD_FMN Trimethylamine dehydrogenase (TMADH) and histamine dehydrogenase (HD) FMN-binding domain | Back alignment and domain information |
|---|
Probab=93.83 E-value=2.5 Score=42.12 Aligned_cols=214 Identities=14% Similarity=0.031 Sum_probs=102.0
Q ss_pred ceeEcCcccCCceEecccccccc-cCChhhHHHHHHHHHcCCceecCCCCCCCHHHHhccCCCceEEEeeecCCHHHHHH
Q 017781 62 NTTVLGFKISMPIMIAPTAMQKM-AHPEGEYATARAASAAGTIMTLSSWSTSSVEEVASTGPGIRFFQLYVYKDRNVVAQ 140 (366)
Q Consensus 62 st~l~g~~l~~Pi~iApm~~~~l-~~~~~e~~la~aa~~~G~~~~vs~~~~~~~e~i~~~~~~~~~~Qly~~~d~~~~~~ 140 (366)
..+|.++++++-|++|||+...- ..++-....-..-++-|+++++.+....+.+. ...+. .-..+|....-+..++
T Consensus 11 P~~ig~~~lkNRiv~apm~~~~~~~~~~~~~~y~~~rA~gG~GLIi~e~~~V~~~~--~~~~~-~~~~l~~d~~i~~~~~ 87 (370)
T cd02929 11 PIKIGPVTARNRFYQVPHCNGMGYRKPSAQAAMRGIKAEGGWGVVNTEQCSIHPSS--DDTPR-ISARLWDDGDIRNLAA 87 (370)
T ss_pred CccCCCEEeccceEECCcccCcCCCChHHHHHHHHHHhCCCceEEEEeeeEEcccc--ccCcc-cCcCcCCHHHHHHHHH
Confidence 35677899999999999953221 11211112222234567888776543332111 01110 0122332223445677
Q ss_pred HHHHHHHcCCCEEEEecCCCCCcchhHHHhhhcCCCCccccccccccccCCCccccchhhHHHhhhccCCCCCHHHHHHH
Q 017781 141 LVRRAERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLTLKNFQGLDLGKMDEANDSGLAAYVAGQIDRSLSWKDVKWL 220 (366)
Q Consensus 141 ~l~ra~~~G~~ai~vtvd~p~~g~r~~d~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~i~~l 220 (366)
+++.+++.|++.+ +-+.. .|.+......+. .|. .... +.. ... .........++.++|+++
T Consensus 88 l~~~vh~~G~~i~-~QL~H--~G~~~~~~~~~~-~~~--~ps~--------~~~-~~~----~~~~~~p~~mt~~eI~~i 148 (370)
T cd02929 88 MTDAVHKHGALAG-IELWH--GGAHAPNRESRE-TPL--GPSQ--------LPS-EFP----TGGPVQAREMDKDDIKRV 148 (370)
T ss_pred HHHHHHHCCCeEE-Eeccc--CCCCCCccCCCC-Ccc--CCCC--------CCC-Ccc----ccCCCCCccCCHHHHHHH
Confidence 7788888888754 33332 232211000000 000 0000 000 000 000001234677888888
Q ss_pred HHhcCCCEEEEeccCHHH-HHcCCcEEEEcCCCcc---C----------CCCCc-------chHHHHHHHHHHcCCCceE
Q 017781 221 QTITKLPILVKGVLTAED-VQAGAAGIIVSNHGAR---Q----------LDYVP-------ATIMALEEVVKATQGRIPV 279 (366)
Q Consensus 221 r~~~~~pv~vK~v~~~~d-~~aGad~I~vs~~gg~---~----------~~~~~-------~~~~~l~~i~~~~~~~i~v 279 (366)
.+.+. ..... .++|+|+|.++...|. | -.+|- -..+.+..|++.++.+++|
T Consensus 149 i~~f~--------~AA~ra~~aGfDgVEih~ahGyLl~QFlSp~~N~RtD~yGGslenR~Rf~~eii~aIr~~vg~~~~v 220 (370)
T cd02929 149 RRWYV--------DAALRARDAGFDIVYVYAAHGYLPLQFLLPRYNKRTDEYGGSLENRARFWRETLEDTKDAVGDDCAV 220 (370)
T ss_pred HHHHH--------HHHHHHHHcCCCEEEEcccccchHHHhhCccccCCccccCCChHhhhHHHHHHHHHHHHHcCCCceE
Confidence 77642 01122 8899999999753332 1 11221 2356777788877656665
Q ss_pred EE---------ecCCCCHH---HHHHHHHhCcCEEEec
Q 017781 280 FL---------DGGVRRGT---DVFKALALGASGIFIG 305 (366)
Q Consensus 280 i~---------~GGI~~~~---dv~kalalGAd~V~ig 305 (366)
.+ .||..+.+ ++++.|+-..|++-+.
T Consensus 221 ~vRls~~~~~~~~g~~~~~e~~~~~~~l~~~~D~i~vs 258 (370)
T cd02929 221 ATRFSVDELIGPGGIESEGEGVEFVEMLDELPDLWDVN 258 (370)
T ss_pred EEEecHHHhcCCCCCCCHHHHHHHHHHHHhhCCEEEec
Confidence 44 12223444 4556666556776554
|
TMADH is an iron-sulfur flavoprotein that catalyzes the oxidative demethylation of trimethylamine to form dimethylamine and formaldehyde. The protein forms a symetrical dimer with each subunit containing one 4Fe-4S cluster and one FMN cofactor. It contains a unique flavin, in the form of a 6-S-cysteinyl FMN which is bent by ~25 degrees along the N5-N10 axis of the flavin isoalloxazine ring. This modification of the conformation of the flavin is thought to facilitate catalysis.The closely related histamine dehydrogenase catalyzes oxidative deamination of histamine. |
| >PRK13957 indole-3-glycerol-phosphate synthase; Provisional | Back alignment and domain information |
|---|
Probab=93.68 E-value=0.26 Score=46.22 Aligned_cols=64 Identities=25% Similarity=0.326 Sum_probs=50.9
Q ss_pred HHcCCcEEEEcCCCccCCCCCcchHHHHHHHHHHcCCCceEEEecCCCCHHHHHHHHHhCcCEEEecHHH
Q 017781 239 VQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFIGRPV 308 (366)
Q Consensus 239 ~~aGad~I~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~i~vi~~GGI~~~~dv~kalalGAd~V~igr~~ 308 (366)
.++||++|.|-.-+. +-...++.|..+++.+ ++||+.-..|-+..++..+.++|||+|.+=-.+
T Consensus 71 ~~~GA~aISVlTe~~----~F~Gs~~~l~~v~~~v--~~PvL~KDFIid~~QI~ea~~~GADavLLI~~~ 134 (247)
T PRK13957 71 ETLGASAISVLTDQS----YFGGSLEDLKSVSSEL--KIPVLRKDFILDEIQIREARAFGASAILLIVRI 134 (247)
T ss_pred HHCCCcEEEEEcCCC----cCCCCHHHHHHHHHhc--CCCEEeccccCCHHHHHHHHHcCCCEEEeEHhh
Confidence 788999998765321 1113567888888887 899999999999999999999999999765444
|
|
| >PF00701 DHDPS: Dihydrodipicolinate synthetase family; InterPro: IPR002220 Dihydropicolinate synthase (DHDPS) is the key enzyme in lysine biosynthesis via the diaminopimelate pathway of prokaryotes, some phycomycetes and higher plants | Back alignment and domain information |
|---|
Probab=93.60 E-value=0.26 Score=47.13 Aligned_cols=87 Identities=21% Similarity=0.355 Sum_probs=54.5
Q ss_pred HHcCCcEEEEcCCCccCCCCCcc-hHHHHHHHHHHcCCCceEEEecCCCCHHHHHH----HHHhCcCEEEecHHHHHHhh
Q 017781 239 VQAGAAGIIVSNHGARQLDYVPA-TIMALEEVVKATQGRIPVFLDGGVRRGTDVFK----ALALGASGIFIGRPVVYSLA 313 (366)
Q Consensus 239 ~~aGad~I~vs~~gg~~~~~~~~-~~~~l~~i~~~~~~~i~vi~~GGI~~~~dv~k----alalGAd~V~igr~~l~~l~ 313 (366)
.+.|+|++.+.++.|-...-... ..+.+..+++.+++++|||+.=|=.+-.++++ |-.+|||++++..|+.+..
T Consensus 32 ~~~Gv~gl~~~GstGE~~~Lt~~Er~~l~~~~~~~~~~~~~vi~gv~~~st~~~i~~a~~a~~~Gad~v~v~~P~~~~~- 110 (289)
T PF00701_consen 32 IEAGVDGLVVLGSTGEFYSLTDEERKELLEIVVEAAAGRVPVIAGVGANSTEEAIELARHAQDAGADAVLVIPPYYFKP- 110 (289)
T ss_dssp HHTTSSEEEESSTTTTGGGS-HHHHHHHHHHHHHHHTTSSEEEEEEESSSHHHHHHHHHHHHHTT-SEEEEEESTSSSC-
T ss_pred HHcCCCEEEECCCCcccccCCHHHHHHHHHHHHHHccCceEEEecCcchhHHHHHHHHHHHhhcCceEEEEeccccccc-
Confidence 56799999998876643222222 23445555666777899888656556666553 3348999999999986642
Q ss_pred hcCHHHHHHHHHHHH
Q 017781 314 AEGEKGVRRVLEMLR 328 (366)
Q Consensus 314 ~~G~~gv~~~~~~l~ 328 (366)
.++++.++++.+.
T Consensus 111 --s~~~l~~y~~~ia 123 (289)
T PF00701_consen 111 --SQEELIDYFRAIA 123 (289)
T ss_dssp --CHHHHHHHHHHHH
T ss_pred --hhhHHHHHHHHHH
Confidence 3455555554443
|
The enzyme catalyses the condensation of L-aspartate-beta- semialdehyde and pyruvate to dihydropicolinic acid via a ping-pong mechanism in which pyruvate binds to the enzyme by forming a Schiff-base with a lysine residue []. Three other proteins are structurally related to DHDPS and probably also act via a similar catalytic mechanism. These are Escherichia coli N-acetylneuraminate lyase (4.1.3.3 from EC) (gene nanA), which catalyzes the condensation of N-acetyl-D-mannosamine and pyruvate to form N-acetylneuraminate; Rhizobium meliloti (Sinorhizobium meliloti) protein mosA [], which is involved in the biosynthesis of the rhizopine 3-o-methyl-scyllo-inosamine; and E. coli hypothetical protein yjhH. The sequences of DHDPS from different sources are well-conserved. The structure takes the form of a homotetramer, in which 2 monomers are related by an approximate 2-fold symmetry []. Each monomer comprises 2 domains: an 8-fold alpha-/beta-barrel, and a C-terminal alpha-helical domain. The fold resembles that of N-acetylneuraminate lyase. The active site lysine is located in the barrel domain, and has access via 2 channels on the C-terminal side of the barrel.; GO: 0016829 lyase activity, 0008152 metabolic process; PDB: 3B4U_B 3S8H_A 3QZE_B 1XXX_F 3L21_F 3IRD_A 3A5F_B 3G0S_B 3DAQ_C 3UQN_A .... |
| >TIGR02319 CPEP_Pphonmut carboxyvinyl-carboxyphosphonate phosphorylmutase | Back alignment and domain information |
|---|
Probab=93.59 E-value=5.8 Score=38.27 Aligned_cols=62 Identities=16% Similarity=0.178 Sum_probs=42.4
Q ss_pred HHcCCcEEEEcCCCccCCCCCcchHHHHHHHHHHcCCCceE---EEecCCCCHHHHHHHHHhCcCEEEecHHHHHH
Q 017781 239 VQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPV---FLDGGVRRGTDVFKALALGASGIFIGRPVVYS 311 (366)
Q Consensus 239 ~~aGad~I~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~i~v---i~~GGI~~~~dv~kalalGAd~V~igr~~l~~ 311 (366)
.++|||+|.+.+ +.+.+.+.++.+.++ .|+ +..||-.-...+...-++|.+.|..+...+++
T Consensus 175 ~eAGAD~ifi~~---------~~~~~ei~~~~~~~~--~P~~~nv~~~~~~p~~s~~eL~~lG~~~v~~~~~~~~a 239 (294)
T TIGR02319 175 VAAGADCIFLEA---------MLDVEEMKRVRDEID--APLLANMVEGGKTPWLTTKELESIGYNLAIYPLSGWMA 239 (294)
T ss_pred HHhCCCEEEecC---------CCCHHHHHHHHHhcC--CCeeEEEEecCCCCCCCHHHHHHcCCcEEEEcHHHHHH
Confidence 899999998732 345677778888774 444 44444322234555556899999999877765
|
This family consists of carboxyvinyl-carboxyphosphonate phosphorylmutase (CPEP phosphonomutase), an unusual enzyme involved in the biosynthesis of the antibiotic bialaphos. So far, it is known only in that pathway and only in Streptomyces hygroscopicus. Some related proteins annotated as being functionally equivalent are likely misannotated examples of methylisocitrate lyase, an enzyme of priopionate utilization. |
| >cd00950 DHDPS Dihydrodipicolinate synthase (DHDPS) is a key enzyme in lysine biosynthesis | Back alignment and domain information |
|---|
Probab=93.54 E-value=0.43 Score=45.44 Aligned_cols=88 Identities=20% Similarity=0.374 Sum_probs=55.9
Q ss_pred HHcCCcEEEEcCCCccCCCCCcc-hHHHHHHHHHHcCCCceEEEecCCCCHHHHHH----HHHhCcCEEEecHHHHHHhh
Q 017781 239 VQAGAAGIIVSNHGARQLDYVPA-TIMALEEVVKATQGRIPVFLDGGVRRGTDVFK----ALALGASGIFIGRPVVYSLA 313 (366)
Q Consensus 239 ~~aGad~I~vs~~gg~~~~~~~~-~~~~l~~i~~~~~~~i~vi~~GGI~~~~dv~k----alalGAd~V~igr~~l~~l~ 313 (366)
.+.|+|+|.+.++.|....-... ..+.+..+++.+.+++||++.=|-.+..++++ |-.+|||+|++..|+.+..
T Consensus 31 ~~~Gv~gl~v~GstGE~~~lt~~Er~~l~~~~~~~~~~~~~vi~gv~~~~~~~~~~~a~~a~~~G~d~v~~~~P~~~~~- 109 (284)
T cd00950 31 IENGTDGLVVCGTTGESPTLSDEEHEAVIEAVVEAVNGRVPVIAGTGSNNTAEAIELTKRAEKAGADAALVVTPYYNKP- 109 (284)
T ss_pred HHcCCCEEEECCCCcchhhCCHHHHHHHHHHHHHHhCCCCcEEeccCCccHHHHHHHHHHHHHcCCCEEEEcccccCCC-
Confidence 46799999998776643222222 23445556666667889876555455666654 3448999999999987642
Q ss_pred hcCHHHHHHHHHHHHH
Q 017781 314 AEGEKGVRRVLEMLRE 329 (366)
Q Consensus 314 ~~G~~gv~~~~~~l~~ 329 (366)
.++++.++++.+.+
T Consensus 110 --~~~~l~~~~~~ia~ 123 (284)
T cd00950 110 --SQEGLYAHFKAIAE 123 (284)
T ss_pred --CHHHHHHHHHHHHh
Confidence 34555555555544
|
It catalyzes the aldol condensation of L-aspartate-beta- semialdehyde and pyruvate to dihydropicolinic acid via a Schiff base formation between pyruvate and a lysine residue. The functional enzyme is a homotetramer consisting of a dimer of dimers. DHDPS is member of dihydrodipicolinate synthase family that comprises several pyruvate-dependent class I aldolases that use the same catalytic step to catalyze different reactions in different pathways. |
| >PRK12858 tagatose 1,6-diphosphate aldolase; Reviewed | Back alignment and domain information |
|---|
Probab=93.52 E-value=0.71 Score=45.43 Aligned_cols=68 Identities=24% Similarity=0.279 Sum_probs=41.1
Q ss_pred HcCCcEEEEcCCCc----cCCC------CCcchHHHHHHHHHHcCCCceEEE-ecCCCCHHHHHH----HHHhCc--CEE
Q 017781 240 QAGAAGIIVSNHGA----RQLD------YVPATIMALEEVVKATQGRIPVFL-DGGVRRGTDVFK----ALALGA--SGI 302 (366)
Q Consensus 240 ~aGad~I~vs~~gg----~~~~------~~~~~~~~l~~i~~~~~~~i~vi~-~GGI~~~~dv~k----alalGA--d~V 302 (366)
+.|+|.+.+---+. -..+ ......+.+.++.+.. .+|+++ +||. +.+++.+ |+..|| .+|
T Consensus 197 elGaDvlKve~p~~~~~veg~~~~~~~~~~~~~~~~f~~~~~a~--~~P~vvlsgG~-~~~~f~~~l~~A~~aGa~f~Gv 273 (340)
T PRK12858 197 RYGVDVLKVEVPVDMKFVEGFDGFEEAYTQEEAFKLFREQSDAT--DLPFIFLSAGV-SPELFRRTLEFACEAGADFSGV 273 (340)
T ss_pred ccCCeEEEeeCCCCcccccccccccccccHHHHHHHHHHHHhhC--CCCEEEECCCC-CHHHHHHHHHHHHHcCCCccch
Confidence 59999999742210 0001 1111224456666555 677555 7776 6676665 455799 999
Q ss_pred EecHHHHH
Q 017781 303 FIGRPVVY 310 (366)
Q Consensus 303 ~igr~~l~ 310 (366)
.+||....
T Consensus 274 l~GRniwq 281 (340)
T PRK12858 274 LCGRATWQ 281 (340)
T ss_pred hhhHHHHh
Confidence 99998744
|
|
| >PRK05835 fructose-bisphosphate aldolase; Provisional | Back alignment and domain information |
|---|
Probab=93.51 E-value=1.7 Score=42.11 Aligned_cols=101 Identities=19% Similarity=0.164 Sum_probs=70.0
Q ss_pred HHcCCcEEEEcC---CCccCCCCC-cchHHHHHHHHHHcCCCceEEEecCCCCHH----------------------HHH
Q 017781 239 VQAGAAGIIVSN---HGARQLDYV-PATIMALEEVVKATQGRIPVFLDGGVRRGT----------------------DVF 292 (366)
Q Consensus 239 ~~aGad~I~vs~---~gg~~~~~~-~~~~~~l~~i~~~~~~~i~vi~~GGI~~~~----------------------dv~ 292 (366)
.+.|+|.+-++. ||-+...+. .-.++.|.+|++.+ ++|+..=||=..+. ++.
T Consensus 165 ~~TgvD~LAvaiGt~HG~Yk~~~~p~L~f~~L~~I~~~~--~iPLVLHGgSGip~e~~~~~~~~g~~~~~~~g~~~e~~~ 242 (307)
T PRK05835 165 KESQVDYLAPAIGTSHGAFKFKGEPKLDFERLQEVKRLT--NIPLVLHGASAIPDDVRKSYLDAGGDLKGSKGVPFEFLQ 242 (307)
T ss_pred HhhCCCEEEEccCccccccCCCCCCccCHHHHHHHHHHh--CCCEEEeCCCCCchHHhhhhhhhccccccccCCCHHHHH
Confidence 567999998874 443211111 23678999999988 89999999877666 799
Q ss_pred HHHHhCcCEEEecHHHHHHhhh-------cC------HHHHHHHHHHHHHHHHHHHHHcCCC
Q 017781 293 KALALGASGIFIGRPVVYSLAA-------EG------EKGVRRVLEMLREEFELAMALSGCR 341 (366)
Q Consensus 293 kalalGAd~V~igr~~l~~l~~-------~G------~~gv~~~~~~l~~el~~~m~~~G~~ 341 (366)
||+.+|..-|-+++-+..+... .. ..-.....+.+++..+..|+.+|+.
T Consensus 243 kai~~GI~KiNi~T~l~~a~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~v~~~i~~~gs~ 304 (307)
T PRK05835 243 ESVKGGINKVNTDTDLRIAFIAEVRKVANEDKSQFDLRKFFSPAQLALKNVVKERMKLLGSA 304 (307)
T ss_pred HHHHcCceEEEeChHHHHHHHHHHHHHHHhCCccCCHHHHHHHHHHHHHHHHHHHHHHhCCC
Confidence 9999999999999977554211 00 1223344566777777888888764
|
|
| >PF01207 Dus: Dihydrouridine synthase (Dus); InterPro: IPR001269 Members of this family catalyse the reduction of the 5,6-double bond of a uridine residue on tRNA | Back alignment and domain information |
|---|
Probab=93.51 E-value=0.36 Score=46.84 Aligned_cols=86 Identities=22% Similarity=0.389 Sum_probs=54.8
Q ss_pred cCCCceEEEeeecCC--HHHHHHHHHHHHHcCCCEEEEecCCCCCcchhHHHhhhcCCCCccccccccccccCCCccccc
Q 017781 120 TGPGIRFFQLYVYKD--RNVVAQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLTLKNFQGLDLGKMDEAND 197 (366)
Q Consensus 120 ~~~~~~~~Qly~~~d--~~~~~~~l~ra~~~G~~ai~vtvd~p~~g~r~~d~~~~~~~p~~~~~~~~~~~~~~~~~~~~~ 197 (366)
..+.|..+.+-.+.+ .+.+.+++++++++|++.|.||--++.. .
T Consensus 120 ~~~~pvsvKiR~g~~~~~~~~~~~~~~l~~~G~~~i~vH~Rt~~q---------~------------------------- 165 (309)
T PF01207_consen 120 AVPIPVSVKIRLGWDDSPEETIEFARILEDAGVSAITVHGRTRKQ---------R------------------------- 165 (309)
T ss_dssp H-SSEEEEEEESECT--CHHHHHHHHHHHHTT--EEEEECS-TTC---------C-------------------------
T ss_pred ccccceEEecccccccchhHHHHHHHHhhhcccceEEEecCchhh---------c-------------------------
Confidence 334566666655544 6778899999999999999887533211 0
Q ss_pred hhhHHHhhhccCCCCCHHHHHHHHHhcCCCEEEEe-ccCHHH-----HHcCCcEEEEc
Q 017781 198 SGLAAYVAGQIDRSLSWKDVKWLQTITKLPILVKG-VLTAED-----VQAGAAGIIVS 249 (366)
Q Consensus 198 ~~~~~~~~~~~d~~~~~~~i~~lr~~~~~pv~vK~-v~~~~d-----~~aGad~I~vs 249 (366)
......|+.++++++..++||+.=| +.+.+| ...|+|+|-+.
T Consensus 166 ----------~~~~a~w~~i~~i~~~~~ipvi~NGdI~s~~d~~~~~~~tg~dgvMig 213 (309)
T PF01207_consen 166 ----------YKGPADWEAIAEIKEALPIPVIANGDIFSPEDAERMLEQTGADGVMIG 213 (309)
T ss_dssp ----------CTS---HHHHHHCHHC-TSEEEEESS--SHHHHHHHCCCH-SSEEEES
T ss_pred ----------CCcccchHHHHHHhhcccceeEEcCccCCHHHHHHHHHhcCCcEEEEc
Confidence 1224589999999999999999886 578887 45599999773
|
Dihydrouridine modification of tRNA is widely observed in prokaryotes and eukaryotes, and also in some archae. Most dihydrouridines are found in the D loop of t-RNAs. The role of dihydrouridine in tRNA is currently unknown, but may increase conformational flexibility of the tRNA. It is likely that different family members have different substrate specificities, which may overlap. Dus 1 (P53759 from SWISSPROT) from Saccharomyces cerevisiae (Baker's yeast) acts on pre-tRNA-Phe, while Dus 2 (P53720 from SWISSPROT) acts on pre-tRNA-Tyr and pre-tRNA-Leu. Dus 1 is active as a single subunit, requiring NADPH or NADH, and is stimulated by the presence of FAD []. Some family members may be targeted to the mitochondria and even have a role in mitochondria []. ; GO: 0017150 tRNA dihydrouridine synthase activity, 0050660 flavin adenine dinucleotide binding, 0008033 tRNA processing, 0055114 oxidation-reduction process; PDB: 1VHN_A 3B0P_A 3B0V_D 3B0U_Y. |
| >PRK09140 2-dehydro-3-deoxy-6-phosphogalactonate aldolase; Reviewed | Back alignment and domain information |
|---|
Probab=93.48 E-value=0.7 Score=42.17 Aligned_cols=76 Identities=25% Similarity=0.271 Sum_probs=52.1
Q ss_pred HHHHHHHHHhcCCC--EEEEeccCHHH----HHcCCcEEEEcCCCccCCCCCcchHHHHHHHHHHcCCCceEEEecCCCC
Q 017781 214 WKDVKWLQTITKLP--ILVKGVLTAED----VQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRR 287 (366)
Q Consensus 214 ~~~i~~lr~~~~~p--v~vK~v~~~~d----~~aGad~I~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~i~vi~~GGI~~ 287 (366)
.+.++.+++.++.+ |.+..+++.++ .++|+|+++..+ ...+.+ +.+... .++++. | +.|
T Consensus 49 ~~~i~~l~~~~~~~~~iGaGTV~~~~~~~~a~~aGA~fivsp~----------~~~~v~-~~~~~~--~~~~~~-G-~~t 113 (206)
T PRK09140 49 FDSIAALVKALGDRALIGAGTVLSPEQVDRLADAGGRLIVTPN----------TDPEVI-RRAVAL--GMVVMP-G-VAT 113 (206)
T ss_pred HHHHHHHHHHcCCCcEEeEEecCCHHHHHHHHHcCCCEEECCC----------CCHHHH-HHHHHC--CCcEEc-c-cCC
Confidence 35689999888544 44445677776 999999996422 122222 222222 455544 3 999
Q ss_pred HHHHHHHHHhCcCEEEe
Q 017781 288 GTDVFKALALGASGIFI 304 (366)
Q Consensus 288 ~~dv~kalalGAd~V~i 304 (366)
.+++.+|..+|||.|.+
T Consensus 114 ~~E~~~A~~~Gad~vk~ 130 (206)
T PRK09140 114 PTEAFAALRAGAQALKL 130 (206)
T ss_pred HHHHHHHHHcCCCEEEE
Confidence 99999999999999997
|
|
| >TIGR01303 IMP_DH_rel_1 IMP dehydrogenase family protein | Back alignment and domain information |
|---|
Probab=93.36 E-value=0.28 Score=50.52 Aligned_cols=242 Identities=16% Similarity=0.222 Sum_probs=128.9
Q ss_pred hcccceeeeccccC-CC-CCCccceeEcCcccCCceEecccccccccCChhhHHHHHHHHHcCCceecCCCCCCCHHHHh
Q 017781 41 NAFSRILFRPRILI-DV-SKIDMNTTVLGFKISMPIMIAPTAMQKMAHPEGEYATARAASAAGTIMTLSSWSTSSVEEVA 118 (366)
Q Consensus 41 ~~f~~i~l~pr~l~-~~-~~vd~st~l~g~~l~~Pi~iApm~~~~l~~~~~e~~la~aa~~~G~~~~vs~~~~~~~e~i~ 118 (366)
-.|||+.|+|.... .. +++|++|.+ ..++..||+.|||--.+ |..||.+.++.|...++.. ++++++..
T Consensus 12 ltfddvll~p~~~~~~~~~~v~~~t~~-~~~l~~P~vsa~mdtvT------e~~MAi~~A~~GGigvIh~--n~~i~~qa 82 (475)
T TIGR01303 12 LTYNDVFMVPSRSEVGSRFDVDLSTAD-GTGTTIPLVVANMTAVA------GRRMAETVARRGGIVILPQ--DLPIPAVK 82 (475)
T ss_pred CCccceEEccCccCccCCCceeecccc-cCccccceeeccchhhH------HHHHHHHHHHCCCEEEEeC--CCCHHHHH
Confidence 36999999998763 34 489999884 57999999999995433 8899999999999999854 56676554
Q ss_pred ccC---C-Cc----eEEEeeecCCHHHHHHHHHHHHHcCCCEEEEecCCCCCc-chhHHHhhhcCCCCcccccccccccc
Q 017781 119 STG---P-GI----RFFQLYVYKDRNVVAQLVRRAERAGFKAIALTVDTPRLG-RREADIKNRFTLPPFLTLKNFQGLDL 189 (366)
Q Consensus 119 ~~~---~-~~----~~~Qly~~~d~~~~~~~l~ra~~~G~~ai~vtvd~p~~g-~r~~d~~~~~~~p~~~~~~~~~~~~~ 189 (366)
+.- . .. ..+.+.+ .....+.++...+.+...++|.-+.-..| --.+|++.. +.......+.....
T Consensus 83 e~v~~VKv~eim~~~pvtv~p---~~tI~eA~~lm~~~~~~~~vVvD~gklvGIVT~rDL~~~---~~~~~V~dIMt~~l 156 (475)
T TIGR01303 83 QTVAFVKSRDLVLDTPITLAP---HDTVSDAMALIHKRAHGAAVVILEDRPVGLVTDSDLLGV---DRFTQVRDIMSTDL 156 (475)
T ss_pred HHHhhcchhhccccCCeEECC---CCCHHHHHHHHHhcCCeEEEEEECCEEEEEEEHHHhhcC---CCCCCHHHHccCCc
Confidence 321 0 00 1112221 22345556666666766655432210001 112232210 00000000000000
Q ss_pred CCCcc-ccchhhHHHhhh-------ccC------CCCCHHHHHHHHHhcCCCE-------EEE---ecc-CHHH-----H
Q 017781 190 GKMDE-ANDSGLAAYVAG-------QID------RSLSWKDVKWLQTITKLPI-------LVK---GVL-TAED-----V 239 (366)
Q Consensus 190 ~~~~~-~~~~~~~~~~~~-------~~d------~~~~~~~i~~lr~~~~~pv-------~vK---~v~-~~~d-----~ 239 (366)
..+.. .........+.. ..+ .-.+..++-..+.. + |. .+. ++. ...+ .
T Consensus 157 itv~~~~sL~eAl~lM~~~~i~~LPVVD~~g~LvGIIT~~DLl~~~~~-~-~~~d~~grl~Vgaav~~~~~~~~ra~~Lv 234 (475)
T TIGR01303 157 VTAPADTEPRKAFDLLEHAPRDVAPLVDADGTLAGILTRTGALRATIY-T-PATDAAGRLRIGAAVGINGDVGGKAKALL 234 (475)
T ss_pred eEeCCCCcHHHHHHHHHHcCCCEEEEEcCCCeEEEEEEHHHHHHHHhC-C-chhhhccCceehheeeeCccHHHHHHHHH
Confidence 00000 000000000000 000 01133333222221 1 11 111 110 1111 8
Q ss_pred HcCCcEEEEcCCCccCCCCCcchHHHHHHHHHHcCCCceEEEecCCCCHHHHHHHHHhCcCEEEec
Q 017781 240 QAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFIG 305 (366)
Q Consensus 240 ~aGad~I~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~i~vi~~GGI~~~~dv~kalalGAd~V~ig 305 (366)
++|+|.|++....|+. ....+.+++|++..+ ++|||+ |-+.|.+.+..++.+|||+|-+|
T Consensus 235 ~aGVd~i~~D~a~g~~----~~~~~~i~~i~~~~~-~~~vi~-g~~~t~~~~~~l~~~G~d~i~vg 294 (475)
T TIGR01303 235 DAGVDVLVIDTAHGHQ----VKMISAIKAVRALDL-GVPIVA-GNVVSAEGVRDLLEAGANIIKVG 294 (475)
T ss_pred HhCCCEEEEeCCCCCc----HHHHHHHHHHHHHCC-CCeEEE-eccCCHHHHHHHHHhCCCEEEEC
Confidence 8999999998654542 456678888887653 689999 77999999999999999998765
|
This model represents a family of proteins, often annotated as a putative IMP dehydrogenase, related to IMP dehydrogenase and GMP reductase and restricted to the high GC Gram-positive bacteria. All species in which a member is found so far (Corynebacterium glutamicum, Mycobacterium tuberculosis, Streptomyces coelicolor, etc.) also have IMP dehydrogenase as described by TIGRFAMs entry TIGR01302. |
| >cd03315 MLE_like Muconate lactonizing enzyme (MLE) like subgroup of the enolase superfamily | Back alignment and domain information |
|---|
Probab=93.34 E-value=1.8 Score=40.66 Aligned_cols=42 Identities=29% Similarity=0.443 Sum_probs=36.1
Q ss_pred hHHHHHHHHHHcCCCceEEEecCCCCHHHHHHHHHhC-cCEEEec
Q 017781 262 TIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALG-ASGIFIG 305 (366)
Q Consensus 262 ~~~~l~~i~~~~~~~i~vi~~GGI~~~~dv~kalalG-Ad~V~ig 305 (366)
.++.+.++++.. .+||++++.+.+..|+.+++..+ +|.|++-
T Consensus 168 d~~~~~~l~~~~--~ipia~dE~~~~~~~~~~~i~~~~~d~v~~k 210 (265)
T cd03315 168 DLEGRAALARAT--DTPIMADESAFTPHDAFRELALGAADAVNIK 210 (265)
T ss_pred cHHHHHHHHhhC--CCCEEECCCCCCHHHHHHHHHhCCCCEEEEe
Confidence 467777888776 79999999999999999999876 7988885
|
Enzymes of this subgroup share three conserved carboxylate ligands for the essential divalent metal ion (usually Mg2+), two aspartates and a glutamate, and residues that can function as general acid/base catalysts, a Lys-X-Lys motif and another conserved lysine. Despite these conserved residues, the members of the MLE subgroup, like muconate lactonizing enzyme, o-succinylbenzoate synthase (OSBS) and N-acylamino acid racemase (NAAAR), catalyze different reactions. |
| >COG1646 Predicted phosphate-binding enzymes, TIM-barrel fold [General function prediction only] | Back alignment and domain information |
|---|
Probab=93.33 E-value=0.14 Score=47.29 Aligned_cols=46 Identities=22% Similarity=0.432 Sum_probs=35.6
Q ss_pred cchHHHHHHHHHHcCCCceEEEecCCCCHHHHHHHHHhCcCEEEecHHHH
Q 017781 260 PATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFIGRPVV 309 (366)
Q Consensus 260 ~~~~~~l~~i~~~~~~~i~vi~~GGI~~~~dv~kalalGAd~V~igr~~l 309 (366)
|...+.++.+. ...++|.-||||+++.+.+...+|||.+.+|+.+-
T Consensus 179 Pv~~e~v~~v~----~~~~LivGGGIrs~E~A~~~a~agAD~IVtG~iie 224 (240)
T COG1646 179 PVPVEMVSRVL----SDTPLIVGGGIRSPEQAREMAEAGADTIVTGTIIE 224 (240)
T ss_pred CcCHHHHHHhh----ccceEEEcCCcCCHHHHHHHHHcCCCEEEECceee
Confidence 44445554333 24599999999999999988889999999998653
|
|
| >TIGR00736 nifR3_rel_arch TIM-barrel protein, putative | Back alignment and domain information |
|---|
Probab=93.23 E-value=0.63 Score=43.27 Aligned_cols=38 Identities=21% Similarity=0.137 Sum_probs=31.2
Q ss_pred CCHHHHHHHHHhcC-CCEEEEe-ccCHHH----HHcCCcEEEEc
Q 017781 212 LSWKDVKWLQTITK-LPILVKG-VLTAED----VQAGAAGIIVS 249 (366)
Q Consensus 212 ~~~~~i~~lr~~~~-~pv~vK~-v~~~~d----~~aGad~I~vs 249 (366)
..|+.|+.+++.++ +|||.=| +.+.+| .++|||+|.+.
T Consensus 177 a~~~~I~~i~~~~~~ipIIgNGgI~s~eda~e~l~~GAd~Vmvg 220 (231)
T TIGR00736 177 ADMDLLKILSEEFNDKIIIGNNSIDDIESAKEMLKAGADFVSVA 220 (231)
T ss_pred hhHHHHHHHHHhcCCCcEEEECCcCCHHHHHHHHHhCCCeEEEc
Confidence 47999999999984 8977664 578888 77999999874
|
Members of this family show a distant relationship by PSI-BLAST to alpha/beta (TIM) barrel enzymes such as dihydroorotate dehydrogenase and glycolate oxidase. At least two closely related but well-separable families among the bacteria, the nifR3/yhdG family and the yjbN family, share a more distant relationship to this family of shorter, exclusively archaeal proteins. |
| >KOG2335 consensus tRNA-dihydrouridine synthase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=93.22 E-value=1.1 Score=44.00 Aligned_cols=86 Identities=19% Similarity=0.357 Sum_probs=62.6
Q ss_pred CCceEEEeeecCCHHHHHHHHHHHHHcCCCEEEEecCCCCCcchhHHHhhhcCCCCccccccccccccCCCccccchhhH
Q 017781 122 PGIRFFQLYVYKDRNVVAQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLTLKNFQGLDLGKMDEANDSGLA 201 (366)
Q Consensus 122 ~~~~~~Qly~~~d~~~~~~~l~ra~~~G~~ai~vtvd~p~~g~r~~d~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~ 201 (366)
+.|....+-...|.+.+.+.++.++++|++.+.|+- |.++.+-
T Consensus 141 ~~pVs~KIRI~~d~~kTvd~ak~~e~aG~~~ltVHG-------Rtr~~kg------------------------------ 183 (358)
T KOG2335|consen 141 NVPVSVKIRIFVDLEKTVDYAKMLEDAGVSLLTVHG-------RTREQKG------------------------------ 183 (358)
T ss_pred CCCeEEEEEecCcHHHHHHHHHHHHhCCCcEEEEec-------ccHHhcC------------------------------
Confidence 345666666678888888999999999999887752 2222110
Q ss_pred HHhhhccCCCCCHHHHHHHHHhcC-CCEEEEe-ccCHHH-----HHcCCcEEEEc
Q 017781 202 AYVAGQIDRSLSWKDVKWLQTITK-LPILVKG-VLTAED-----VQAGAAGIIVS 249 (366)
Q Consensus 202 ~~~~~~~d~~~~~~~i~~lr~~~~-~pv~vK~-v~~~~d-----~~aGad~I~vs 249 (366)
...+..+|+.|+.+|+... +||++-| +.+.+| ...|+|||-+.
T Consensus 184 -----~~~~pad~~~i~~v~~~~~~ipviaNGnI~~~~d~~~~~~~tG~dGVM~a 233 (358)
T KOG2335|consen 184 -----LKTGPADWEAIKAVRENVPDIPVIANGNILSLEDVERCLKYTGADGVMSA 233 (358)
T ss_pred -----CCCCCcCHHHHHHHHHhCcCCcEEeeCCcCcHHHHHHHHHHhCCceEEec
Confidence 0134579999999999997 9999986 467776 55999999653
|
|
| >cd00377 ICL_PEPM Members of the ICL/PEPM enzyme family catalyze either P-C or C-C bond formation/cleavage | Back alignment and domain information |
|---|
Probab=93.06 E-value=0.65 Score=43.45 Aligned_cols=92 Identities=23% Similarity=0.360 Sum_probs=53.2
Q ss_pred HHHHHHHhcCCCEEEEecc---CHHH--------HHcCCcEEEE--------cCCCc-cCCCCCcchHHHHHHHHHHcCC
Q 017781 216 DVKWLQTITKLPILVKGVL---TAED--------VQAGAAGIIV--------SNHGA-RQLDYVPATIMALEEVVKATQG 275 (366)
Q Consensus 216 ~i~~lr~~~~~pv~vK~v~---~~~d--------~~aGad~I~v--------s~~gg-~~~~~~~~~~~~l~~i~~~~~~ 275 (366)
.++.+...+.+||++-+-. +.++ .++|+++|.+ .+|.| ..+-.--...+.|..++++..+
T Consensus 60 ~~~~I~~~~~~Pv~~D~~~G~g~~~~~~~~v~~~~~~G~~gv~iED~~~~k~~g~~~~~~~~~~ee~~~ki~aa~~a~~~ 139 (243)
T cd00377 60 AVRRIARAVDLPVIADADTGYGNALNVARTVRELEEAGAAGIHIEDQVGPKKCGHHGGKVLVPIEEFVAKIKAARDARDD 139 (243)
T ss_pred HHHHHHhhccCCEEEEcCCCCCCHHHHHHHHHHHHHcCCEEEEEecCCCCccccCCCCCeecCHHHHHHHHHHHHHHHhc
Confidence 4666667678998877433 4333 7899999998 23221 1110001122344444444444
Q ss_pred --CceEEEe--------cCCCCHHHHHHHH-HhCcCEEEecHH
Q 017781 276 --RIPVFLD--------GGVRRGTDVFKAL-ALGASGIFIGRP 307 (366)
Q Consensus 276 --~i~vi~~--------GGI~~~~dv~kal-alGAd~V~igr~ 307 (366)
+++|++= .|+...-.-+++. .+|||+|++-.+
T Consensus 140 ~~~~~IiARTDa~~~~~~~~~eai~Ra~ay~~AGAD~v~v~~~ 182 (243)
T cd00377 140 LPDFVIIARTDALLAGEEGLDEAIERAKAYAEAGADGIFVEGL 182 (243)
T ss_pred cCCeEEEEEcCchhccCCCHHHHHHHHHHHHHcCCCEEEeCCC
Confidence 6888876 3444444444444 489999999754
|
Known members are phosphoenolpyruvate mutase (PEPM), phosphonopyruvate hydrolase (PPH), carboxyPEP mutase (CPEP mutase), oxaloacetate hydrolase (OAH), isocitrate lyase (ICL), and 2-methylisocitrate lyase (MICL). Isocitrate lyase (ICL) catalyzes the conversion of isocitrate to succinate and glyoxylate, the first committed step in the glyoxylate pathway. This carbon-conserving pathway is present in most prokaryotes, lower eukaryotes and plants, but has not been observed in vertebrates. PEP mutase (PEPM) turns phosphoenolpyruvate (PEP) into phosphonopyruvate (P-pyr), an important intermediate in the formation of organophosphonates, which function as antibiotics or play a role in pathogenesis or signaling. P-pyr can be hydrolyzed by phosphonopyruvate hydrolase (PPH) to from pyruvate and phosphate. Oxaloacetate acetylhydrolase (OAH) catalyzes the hydrolytic cleavage of oxaloacetate to |
| >PRK03170 dihydrodipicolinate synthase; Provisional | Back alignment and domain information |
|---|
Probab=92.94 E-value=0.55 Score=44.93 Aligned_cols=88 Identities=20% Similarity=0.367 Sum_probs=55.5
Q ss_pred HHcCCcEEEEcCCCccCCCCCcc-hHHHHHHHHHHcCCCceEEEecCCCCHHHHHH----HHHhCcCEEEecHHHHHHhh
Q 017781 239 VQAGAAGIIVSNHGARQLDYVPA-TIMALEEVVKATQGRIPVFLDGGVRRGTDVFK----ALALGASGIFIGRPVVYSLA 313 (366)
Q Consensus 239 ~~aGad~I~vs~~gg~~~~~~~~-~~~~l~~i~~~~~~~i~vi~~GGI~~~~dv~k----alalGAd~V~igr~~l~~l~ 313 (366)
.+.|+|+|.+.++.|....-... ..+.+..+++.+.+++||++.=|=.+-.++++ |-.+|||+|++..|+++..
T Consensus 32 ~~~Gv~gi~~~Gs~GE~~~ls~~Er~~~~~~~~~~~~~~~~vi~gv~~~~~~~~i~~a~~a~~~G~d~v~~~pP~~~~~- 110 (292)
T PRK03170 32 IANGTDGLVVVGTTGESPTLTHEEHEELIRAVVEAVNGRVPVIAGTGSNSTAEAIELTKFAEKAGADGALVVTPYYNKP- 110 (292)
T ss_pred HHcCCCEEEECCcCCccccCCHHHHHHHHHHHHHHhCCCCcEEeecCCchHHHHHHHHHHHHHcCCCEEEECCCcCCCC-
Confidence 45799999987766643222322 23455666677777899876444444555543 2347999999999987642
Q ss_pred hcCHHHHHHHHHHHHH
Q 017781 314 AEGEKGVRRVLEMLRE 329 (366)
Q Consensus 314 ~~G~~gv~~~~~~l~~ 329 (366)
.++++.++++.+.+
T Consensus 111 --~~~~i~~~~~~ia~ 124 (292)
T PRK03170 111 --TQEGLYQHFKAIAE 124 (292)
T ss_pred --CHHHHHHHHHHHHh
Confidence 45666665555544
|
|
| >PF04898 Glu_syn_central: Glutamate synthase central domain; InterPro: IPR006982 Glutamate synthase (GltS)1 is a key enzyme in the early stages of the assimilation of ammonia in bacteria, yeasts, and plants | Back alignment and domain information |
|---|
Probab=92.92 E-value=0.76 Score=44.05 Aligned_cols=114 Identities=20% Similarity=0.268 Sum_probs=70.8
Q ss_pred HHcCCcEEEEcCCCccCCCCCcchHHHHHHHHHHc-----CCCceEEE-ecCCCCHHHHHHHHHhCcCEEEecHHH--HH
Q 017781 239 VQAGAAGIIVSNHGARQLDYVPATIMALEEVVKAT-----QGRIPVFL-DGGVRRGTDVFKALALGASGIFIGRPV--VY 310 (366)
Q Consensus 239 ~~aGad~I~vs~~gg~~~~~~~~~~~~l~~i~~~~-----~~~i~vi~-~GGI~~~~dv~kalalGAd~V~igr~~--l~ 310 (366)
.+.|+..|++|-.+...-.-..|++-++..+...+ +.++.||+ +|-+|+.-|++..+..|||+|.=.-+| +.
T Consensus 152 v~~G~~ilILsDr~~~~~~~~IP~lLAv~avh~~Li~~glR~~~slIvesge~re~Hh~a~LlGyGA~AV~PYla~e~~~ 231 (287)
T PF04898_consen 152 VREGANILILSDRNASPDRAPIPSLLAVSAVHHHLIREGLRTRVSLIVESGEAREVHHFATLLGYGADAVNPYLAYETIR 231 (287)
T ss_dssp HHCT-SEEEEESTC-CTTEEE--HHHHHHHHHHHHHCTT-CCC-EEEEEESS--SHHHHHHHHCTT-SEEEEHCCHHHHH
T ss_pred HHcCCcEEEECCCCCCcCcccccHHHHHHHHHHHHHHcCCcceeeEEEecCCcccHHHHHHHHcCCHhhhcHHHHHHHHH
Confidence 88999999999865322112334555555555443 33566554 678999999999999999998532221 11
Q ss_pred HhhhcC-------HHHHHHHHHHHHHHHHHHHHHcCCCChhhhccccee
Q 017781 311 SLAAEG-------EKGVRRVLEMLREEFELAMALSGCRSLKEITRDHIV 352 (366)
Q Consensus 311 ~l~~~G-------~~gv~~~~~~l~~el~~~m~~~G~~~l~el~~~~l~ 352 (366)
.+...| ++.+.+++..+.+.|...|..+|.+.++.-++..+.
T Consensus 232 ~~~~~~~~~~~~~~~~~~ny~~a~~kGllKimSKMGIstl~SY~gaqiF 280 (287)
T PF04898_consen 232 ELAERGELPELSPEEAIKNYRKALEKGLLKIMSKMGISTLQSYRGAQIF 280 (287)
T ss_dssp HCCCCCCCCT--HHHHHHHHHHHHHHHHHHHHHCTT--BHHHHCCS--E
T ss_pred HHHhcCCCCCCCHHHHHHHHHHHHHHHHHHHHHhcChHHhhhcccceee
Confidence 122222 367899999999999999999999999888766543
|
In bacteria, L-glutamate is involved in osmoregulation, is the precursor for other amino acids, and can be the precursor for haem biosynthesis. In plants, GltS is especially essential in the reassimilation of ammonia released by photorespiration. On the basis of the amino acid sequence and the nature of the electron donor, three different classes of GltS can de defined as follows: 1) ferredoxin-dependent GltS (Fd-GltS), 2) NADPH-dependent GltS (NADPH-GltS), and 3) NADH-dependent GltS (properties of the three classes have been reviewed extensively []). The enzyme is a complex iron-sulphur flavoprotein catalysing the reductive transfer of the amido nitrogen from L-glutamine to 2-oxoglutarate to form two molecules of L-glutamate via intramolecular channelling of ammonia from the amidotransferase domain to the FMN-binding domain. Reaction of amidotransferase domain: |
| >PRK10550 tRNA-dihydrouridine synthase C; Provisional | Back alignment and domain information |
|---|
Probab=92.85 E-value=1.2 Score=43.27 Aligned_cols=83 Identities=8% Similarity=0.230 Sum_probs=55.9
Q ss_pred CceEEEeeecC-CHHHHHHHHHHHHHcCCCEEEEecCCCCCcchhHHHhhhcCCCCccccccccccccCCCccccchhhH
Q 017781 123 GIRFFQLYVYK-DRNVVAQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLTLKNFQGLDLGKMDEANDSGLA 201 (366)
Q Consensus 123 ~~~~~Qly~~~-d~~~~~~~l~ra~~~G~~ai~vtvd~p~~g~r~~d~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~ 201 (366)
-|.++.+-.+. +.+...++++.++++|++.|.|+-.+.. +++
T Consensus 134 ~pVsvKiR~g~~~~~~~~~~a~~l~~~Gvd~i~Vh~Rt~~---------~~y---------------------------- 176 (312)
T PRK10550 134 LPVTVKVRLGWDSGERKFEIADAVQQAGATELVVHGRTKE---------DGY---------------------------- 176 (312)
T ss_pred cceEEEEECCCCCchHHHHHHHHHHhcCCCEEEECCCCCc---------cCC----------------------------
Confidence 36666654332 2234678888888999999877532110 000
Q ss_pred HHhhhccCCCCCHHHHHHHHHhcCCCEEEEe-ccCHHH-----HHcCCcEEEE
Q 017781 202 AYVAGQIDRSLSWKDVKWLQTITKLPILVKG-VLTAED-----VQAGAAGIIV 248 (366)
Q Consensus 202 ~~~~~~~d~~~~~~~i~~lr~~~~~pv~vK~-v~~~~d-----~~aGad~I~v 248 (366)
.-+...|+.++++++..++||+.=| +.+++| .+.|+|+|-+
T Consensus 177 ------~g~~~~~~~i~~ik~~~~iPVi~nGdI~t~~da~~~l~~~g~DgVmi 223 (312)
T PRK10550 177 ------RAEHINWQAIGEIRQRLTIPVIANGEIWDWQSAQQCMAITGCDAVMI 223 (312)
T ss_pred ------CCCcccHHHHHHHHhhcCCcEEEeCCcCCHHHHHHHHhccCCCEEEE
Confidence 0122479999999999999988775 468877 5689999977
|
|
| >KOG3111 consensus D-ribulose-5-phosphate 3-epimerase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=92.84 E-value=3.3 Score=37.30 Aligned_cols=109 Identities=23% Similarity=0.273 Sum_probs=61.0
Q ss_pred HHHHHHHhc-CCCEEEEeccCHHH---HHcCCcEEEEc----CCCccCCCCCcchHHHHHHHHHHcCCCceEEEecCCCC
Q 017781 216 DVKWLQTIT-KLPILVKGVLTAED---VQAGAAGIIVS----NHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRR 287 (366)
Q Consensus 216 ~i~~lr~~~-~~pv~vK~v~~~~d---~~aGad~I~vs----~~gg~~~~~~~~~~~~l~~i~~~~~~~i~vi~~GGI~~ 287 (366)
.++.+|+.- +.-+.+|-....++ ...-+|.+-|- +.|| |. .-+....-+..+++.. .++.+=+|||+ +
T Consensus 104 lv~~ir~~Gmk~G~alkPgT~Ve~~~~~~~~~D~vLvMtVePGFGG-Qk-Fme~mm~KV~~lR~ky-p~l~ievDGGv-~ 179 (224)
T KOG3111|consen 104 LVEKIREKGMKVGLALKPGTPVEDLEPLAEHVDMVLVMTVEPGFGG-QK-FMEDMMPKVEWLREKY-PNLDIEVDGGV-G 179 (224)
T ss_pred HHHHHHHcCCeeeEEeCCCCcHHHHHHhhccccEEEEEEecCCCch-hh-hHHHHHHHHHHHHHhC-CCceEEecCCc-C
Confidence 456666642 22344444445555 22345555432 2233 21 1112223334444332 25667799999 5
Q ss_pred HHHHHHHHHhCcCEEEecHHHHHHhhhcCHHHHHHHHHHHHHHHHHH
Q 017781 288 GTDVFKALALGASGIFIGRPVVYSLAAEGEKGVRRVLEMLREEFELA 334 (366)
Q Consensus 288 ~~dv~kalalGAd~V~igr~~l~~l~~~G~~gv~~~~~~l~~el~~~ 334 (366)
++-+-|+.++||+++..|+.++.+ .--.++|..|+++....
T Consensus 180 ~~ti~~~a~AGAN~iVaGsavf~a------~d~~~vi~~lr~~v~~a 220 (224)
T KOG3111|consen 180 PSTIDKAAEAGANMIVAGSAVFGA------ADPSDVISLLRNSVEKA 220 (224)
T ss_pred cchHHHHHHcCCCEEEecceeecC------CCHHHHHHHHHHHHhhh
Confidence 678999999999999999987643 12235677777766543
|
|
| >PRK08610 fructose-bisphosphate aldolase; Reviewed | Back alignment and domain information |
|---|
Probab=92.75 E-value=2.3 Score=40.90 Aligned_cols=98 Identities=20% Similarity=0.262 Sum_probs=69.2
Q ss_pred HHcCCcEEEEcC---CCccCCCCCcc--hHHHHHHHHHHcCCCceEEEecCCCCH-HHHHHHHHhCcCEEEecHHHHHHh
Q 017781 239 VQAGAAGIIVSN---HGARQLDYVPA--TIMALEEVVKATQGRIPVFLDGGVRRG-TDVFKALALGASGIFIGRPVVYSL 312 (366)
Q Consensus 239 ~~aGad~I~vs~---~gg~~~~~~~~--~~~~l~~i~~~~~~~i~vi~~GGI~~~-~dv~kalalGAd~V~igr~~l~~l 312 (366)
.+.|+|.+-++. ||-+ .+.| .++.|.+|++.+ ++|+..=||=..+ +++.|++.+|..-|-+++-+-.+.
T Consensus 166 ~~TgvD~LAvaiGt~HG~Y---~~~p~Ld~~~L~~I~~~~--~vPLVLHGgSG~~~e~~~~ai~~GI~KiNi~T~l~~a~ 240 (286)
T PRK08610 166 EKTGIDALAPALGSVHGPY---KGEPKLGFKEMEEIGLST--GLPLVLHGGTGIPTKDIQKAIPFGTAKINVNTENQIAS 240 (286)
T ss_pred HHHCCCEEEeecccccccc---CCCCCCCHHHHHHHHHHH--CCCEEEeCCCCCCHHHHHHHHHCCCeEEEeccHHHHHH
Confidence 567999999875 4432 2333 678899999988 7999999987777 667789999999999999764432
Q ss_pred hh-------cC------HHHHHHHHHHHHHHHHHHHHHcCCC
Q 017781 313 AA-------EG------EKGVRRVLEMLREEFELAMALSGCR 341 (366)
Q Consensus 313 ~~-------~G------~~gv~~~~~~l~~el~~~m~~~G~~ 341 (366)
.. .. ..-.....+.+++.++..|+.+|..
T Consensus 241 ~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~v~~~i~~fgs~ 282 (286)
T PRK08610 241 AKAVRDVLNNDKEVYDPRKYLGPAREAIKETVKGKIKEFGTS 282 (286)
T ss_pred HHHHHHHHHhccccCCHHHHHHHHHHHHHHHHHHHHHHhCCC
Confidence 10 01 1223344566777777888888754
|
|
| >cd00408 DHDPS-like Dihydrodipicolinate synthase family | Back alignment and domain information |
|---|
Probab=92.64 E-value=9.3 Score=36.11 Aligned_cols=177 Identities=18% Similarity=0.188 Sum_probs=98.5
Q ss_pred CceEecccccccccCChhhHHHHHHHHHcCCceec-----CCCCCCCHHHHhc-------cCC--CceEEEeeecCCHHH
Q 017781 72 MPIMIAPTAMQKMAHPEGEYATARAASAAGTIMTL-----SSWSTSSVEEVAS-------TGP--GIRFFQLYVYKDRNV 137 (366)
Q Consensus 72 ~Pi~iApm~~~~l~~~~~e~~la~aa~~~G~~~~v-----s~~~~~~~e~i~~-------~~~--~~~~~Qly~~~d~~~ 137 (366)
.|.++.|+.-.+-...++-..+.+-+.+.|+..++ |++.+.+.+|..+ ... .+.++++. ..+.+.
T Consensus 2 ~~a~~TPf~~dg~iD~~~~~~~i~~l~~~Gv~gi~~~GstGE~~~ls~~Er~~l~~~~~~~~~~~~~vi~gv~-~~~~~~ 80 (281)
T cd00408 2 IPALVTPFTADGEVDLDALRRLVEFLIEAGVDGLVVLGTTGEAPTLTDEERKEVIEAVVEAVAGRVPVIAGVG-ANSTRE 80 (281)
T ss_pred CCCeeCCcCCCCCcCHHHHHHHHHHHHHcCCCEEEECCCCcccccCCHHHHHHHHHHHHHHhCCCCeEEEecC-CccHHH
Confidence 35566777544434445556788888888876553 3334566665432 222 34555554 234555
Q ss_pred HHHHHHHHHHcCCCEEEEecCCCCCcchhHHHhhhcCCCCccccccccccccCCCccccchhhHHHhhhccCCCCCHHHH
Q 017781 138 VAQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLTLKNFQGLDLGKMDEANDSGLAAYVAGQIDRSLSWKDV 217 (366)
Q Consensus 138 ~~~~l~ra~~~G~~ai~vtvd~p~~g~r~~d~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~i 217 (366)
..++++.++++|++++++. .|... + ....-..+..
T Consensus 81 ~i~~a~~a~~~Gad~v~v~--pP~y~------------~-------------------------------~~~~~~~~~~ 115 (281)
T cd00408 81 AIELARHAEEAGADGVLVV--PPYYN------------K-------------------------------PSQEGIVAHF 115 (281)
T ss_pred HHHHHHHHHHcCCCEEEEC--CCcCC------------C-------------------------------CCHHHHHHHH
Confidence 7788889999999999873 22110 0 0000122345
Q ss_pred HHHHHhcCCCEEEEecc-------CHHH----HHc-CCcEEEEcCCCccCCCCCcchHHHHHHHHHHcCCCceEEEecCC
Q 017781 218 KWLQTITKLPILVKGVL-------TAED----VQA-GAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGV 285 (366)
Q Consensus 218 ~~lr~~~~~pv~vK~v~-------~~~d----~~a-Gad~I~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~i~vi~~GGI 285 (366)
+.+.+.+++|+++-... +++. .+. .+-+|.-+ . .....+.++++..++++.|+. |.
T Consensus 116 ~~ia~~~~~pi~iYn~P~~tg~~l~~~~~~~L~~~~~v~giK~s---------~-~d~~~~~~~~~~~~~~~~v~~-G~- 183 (281)
T cd00408 116 KAVADASDLPVILYNIPGRTGVDLSPETIARLAEHPNIVGIKDS---------S-GDLDRLTRLIALLGPDFAVLS-GD- 183 (281)
T ss_pred HHHHhcCCCCEEEEECccccCCCCCHHHHHHHhcCCCEEEEEeC---------C-CCHHHHHHHHHhcCCCeEEEE-cc-
Confidence 55566667888876442 3333 210 11222211 1 244455566655544554443 42
Q ss_pred CCHHHHHHHHHhCcCEEEecHHH
Q 017781 286 RRGTDVFKALALGASGIFIGRPV 308 (366)
Q Consensus 286 ~~~~dv~kalalGAd~V~igr~~ 308 (366)
...+...+.+|++++.-|..-
T Consensus 184 --d~~~~~~l~~G~~G~i~~~~n 204 (281)
T cd00408 184 --DDLLLPALALGADGAISGAAN 204 (281)
T ss_pred --hHHHHHHHHcCCCEEEehHHh
Confidence 677888999999999988753
|
A member of the class I aldolases, which use an active-site lysine which stablilzes a reaction intermediate via Schiff base formation, and have TIM beta/alpha barrel fold. The dihydrodipicolinate synthase family comprises several pyruvate-dependent class I aldolases that use the same catalytic step to catalyze different reactions in different pathways and includes such proteins as N-acetylneuraminate lyase, MosA protein, 5-keto-4-deoxy-glucarate dehydratase, trans-o-hydroxybenzylidenepyruvate hydratase-aldolase, trans-2'-carboxybenzalpyruvate hydratase-aldolase, and 2-keto-3-deoxy- gluconate aldolase. The family is also referred to as the N-acetylneuraminate lyase (NAL) family. |
| >PRK13111 trpA tryptophan synthase subunit alpha; Provisional | Back alignment and domain information |
|---|
Probab=92.55 E-value=2 Score=40.68 Aligned_cols=37 Identities=35% Similarity=0.391 Sum_probs=28.7
Q ss_pred HHHHHHHHHhcCCCEEEEe-ccCHHH---HHcCCcEEEEcC
Q 017781 214 WKDVKWLQTITKLPILVKG-VLTAED---VQAGAAGIIVSN 250 (366)
Q Consensus 214 ~~~i~~lr~~~~~pv~vK~-v~~~~d---~~aGad~I~vs~ 250 (366)
.+.++++|+..++|+++.. +.++++ ...+||+++|..
T Consensus 189 ~~~i~~vk~~~~~pv~vGfGI~~~e~v~~~~~~ADGviVGS 229 (258)
T PRK13111 189 AELVARLKAHTDLPVAVGFGISTPEQAAAIAAVADGVIVGS 229 (258)
T ss_pred HHHHHHHHhcCCCcEEEEcccCCHHHHHHHHHhCCEEEEcH
Confidence 4579999998899999985 457777 334599999854
|
|
| >cd04726 KGPDC_HPS 3-Keto-L-gulonate 6-phosphate decarboxylase (KGPDC) and D-arabino-3-hexulose-6-phosphate synthase (HPS) | Back alignment and domain information |
|---|
Probab=92.54 E-value=3.8 Score=36.56 Aligned_cols=83 Identities=25% Similarity=0.203 Sum_probs=55.7
Q ss_pred HHHHHHHHHh-cCCCEEE--EeccC----HHH-HHcCCcEEEEcCCCccCCCCCcchH-HHHHHHHHHcCCCceEEEe-c
Q 017781 214 WKDVKWLQTI-TKLPILV--KGVLT----AED-VQAGAAGIIVSNHGARQLDYVPATI-MALEEVVKATQGRIPVFLD-G 283 (366)
Q Consensus 214 ~~~i~~lr~~-~~~pv~v--K~v~~----~~d-~~aGad~I~vs~~gg~~~~~~~~~~-~~l~~i~~~~~~~i~vi~~-G 283 (366)
.+.++++|+. .+.|+++ |.... .+. .++|+|+|+++.... +... +.+..++ .. .++++++ =
T Consensus 41 ~~~i~~i~~~~~~~~i~~~~~v~~~~~~~~~~~~~aGad~i~~h~~~~------~~~~~~~i~~~~-~~--g~~~~v~~~ 111 (202)
T cd04726 41 MEAVRALREAFPDKIIVADLKTADAGALEAEMAFKAGADIVTVLGAAP------LSTIKKAVKAAK-KY--GKEVQVDLI 111 (202)
T ss_pred HHHHHHHHHHCCCCEEEEEEEeccccHHHHHHHHhcCCCEEEEEeeCC------HHHHHHHHHHHH-Hc--CCeEEEEEe
Confidence 5678888886 4788877 33221 122 899999999865321 1122 2333333 22 5777765 7
Q ss_pred CCCCHHHHHHHHHhCcCEEEec
Q 017781 284 GVRRGTDVFKALALGASGIFIG 305 (366)
Q Consensus 284 GI~~~~dv~kalalGAd~V~ig 305 (366)
+..|+.++.+++..|+|.|.++
T Consensus 112 ~~~t~~e~~~~~~~~~d~v~~~ 133 (202)
T cd04726 112 GVEDPEKRAKLLKLGVDIVILH 133 (202)
T ss_pred CCCCHHHHHHHHHCCCCEEEEc
Confidence 8999999999888999999985
|
KGPDC catalyzes the formation of L-xylulose 5-phosphate and carbon dioxide from 3-keto-L-gulonate 6-phosphate as part of the anaerobic pathway for L-ascorbate utilization in some eubacteria. HPS catalyzes the formation of D-arabino-3-hexulose-6-phosphate from D-ribulose 5-phosphate and formaldehyde in microorganisms that can use formaldehyde as a carbon source. Both catalyze reactions that involve the Mg2+-assisted formation and stabilization of 1,2-enediolate reaction intermediates. |
| >PRK07114 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional | Back alignment and domain information |
|---|
Probab=92.53 E-value=0.7 Score=42.72 Aligned_cols=77 Identities=16% Similarity=0.095 Sum_probs=50.3
Q ss_pred CHHHHHHHHHhc-----CCCEEEEeccCHHH----HHcCCcEEEEcCCCccCCCCCcchHHHHHHHHHHcCCCceEEEec
Q 017781 213 SWKDVKWLQTIT-----KLPILVKGVLTAED----VQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDG 283 (366)
Q Consensus 213 ~~~~i~~lr~~~-----~~pv~vK~v~~~~d----~~aGad~I~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~i~vi~~G 283 (366)
..+.|+.+++.+ ++-|.+..|++.++ .++|+++|+--+ ...+++..+. .. ++|++ =
T Consensus 53 a~~~i~~l~~~~~~~~p~~~vGaGTVl~~e~a~~a~~aGA~FiVsP~----------~~~~v~~~~~-~~--~i~~i--P 117 (222)
T PRK07114 53 AHEVFAELVKYAAKELPGMILGVGSIVDAATAALYIQLGANFIVTPL----------FNPDIAKVCN-RR--KVPYS--P 117 (222)
T ss_pred HHHHHHHHHHHHHhhCCCeEEeeEeCcCHHHHHHHHHcCCCEEECCC----------CCHHHHHHHH-Hc--CCCEe--C
Confidence 345577776443 24455556788887 999999996211 1223333333 22 45544 5
Q ss_pred CCCCHHHHHHHHHhCcCEEEe
Q 017781 284 GVRRGTDVFKALALGASGIFI 304 (366)
Q Consensus 284 GI~~~~dv~kalalGAd~V~i 304 (366)
|+.|+.++..|+.+||+.|=+
T Consensus 118 G~~TpsEi~~A~~~Ga~~vKl 138 (222)
T PRK07114 118 GCGSLSEIGYAEELGCEIVKL 138 (222)
T ss_pred CCCCHHHHHHHHHCCCCEEEE
Confidence 899999999999999998744
|
|
| >COG0159 TrpA Tryptophan synthase alpha chain [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=92.48 E-value=0.43 Score=45.13 Aligned_cols=163 Identities=22% Similarity=0.269 Sum_probs=81.8
Q ss_pred cCcccCCceEeccc---c----cccccCChhhHHHHHHHHHc--CCceecCCCCC----CCHHHHh-ccCC-CceEEEee
Q 017781 66 LGFKISMPIMIAPT---A----MQKMAHPEGEYATARAASAA--GTIMTLSSWST----SSVEEVA-STGP-GIRFFQLY 130 (366)
Q Consensus 66 ~g~~l~~Pi~iApm---~----~~~l~~~~~e~~la~aa~~~--G~~~~vs~~~~----~~~e~i~-~~~~-~~~~~Qly 130 (366)
+|.+++-|+.=.|+ + ..+-...+....+.+..++. ++|.++=+..+ ..++.-. ++.. +.-.+ |.
T Consensus 50 LGvPfSDPvADGP~Iq~A~~rAL~~g~t~~~~lel~~~~r~~~~~~Pivlm~Y~Npi~~~Gie~F~~~~~~~GvdGl-iv 128 (265)
T COG0159 50 LGVPFSDPVADGPTIQAAHLRALAAGVTLEDTLELVEEIRAKGVKVPIVLMTYYNPIFNYGIEKFLRRAKEAGVDGL-LV 128 (265)
T ss_pred ecCCCCCcCccCHHHHHHHHHHHHCCCCHHHHHHHHHHHHhcCCCCCEEEEEeccHHHHhhHHHHHHHHHHcCCCEE-Ee
Confidence 47888888776664 1 11111123356777777754 45666644333 2333311 1111 11111 22
Q ss_pred ecCCHHHHHHHHHHHHHcCCCEEEEecCCCCCc-chhHHHhhhcCCCCccccccccccccCCCccccchhhHHHhhhccC
Q 017781 131 VYKDRNVVAQLVRRAERAGFKAIALTVDTPRLG-RREADIKNRFTLPPFLTLKNFQGLDLGKMDEANDSGLAAYVAGQID 209 (366)
Q Consensus 131 ~~~d~~~~~~~l~ra~~~G~~ai~vtvd~p~~g-~r~~d~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d 209 (366)
+.-..+...++.+.+++.|.+.|.+- +|... +|.+.+...- .+...- ++.....+.. ...
T Consensus 129 pDLP~ee~~~~~~~~~~~gi~~I~lv--aPtt~~~rl~~i~~~a---~GFiY~---------vs~~GvTG~~-----~~~ 189 (265)
T COG0159 129 PDLPPEESDELLKAAEKHGIDPIFLV--APTTPDERLKKIAEAA---SGFIYY---------VSRMGVTGAR-----NPV 189 (265)
T ss_pred CCCChHHHHHHHHHHHHcCCcEEEEe--CCCCCHHHHHHHHHhC---CCcEEE---------EecccccCCC-----ccc
Confidence 33345555667777778888776542 34332 4444443221 011100 0000000000 001
Q ss_pred CCCCHHHHHHHHHhcCCCEEEE-eccCHHH----HHcCCcEEEEc
Q 017781 210 RSLSWKDVKWLQTITKLPILVK-GVLTAED----VQAGAAGIIVS 249 (366)
Q Consensus 210 ~~~~~~~i~~lr~~~~~pv~vK-~v~~~~d----~~aGad~I~vs 249 (366)
....-+.++++|+.+++|+.+. |+.++++ .++ ||+++|.
T Consensus 190 ~~~~~~~v~~vr~~~~~Pv~vGFGIs~~e~~~~v~~~-ADGVIVG 233 (265)
T COG0159 190 SADVKELVKRVRKYTDVPVLVGFGISSPEQAAQVAEA-ADGVIVG 233 (265)
T ss_pred chhHHHHHHHHHHhcCCCeEEecCcCCHHHHHHHHHh-CCeEEEc
Confidence 1123456999999999999999 6677776 777 9999884
|
|
| >PRK00230 orotidine 5'-phosphate decarboxylase; Reviewed | Back alignment and domain information |
|---|
Probab=92.48 E-value=0.26 Score=45.69 Aligned_cols=73 Identities=23% Similarity=0.370 Sum_probs=47.1
Q ss_pred HHcCCcEEEEcCCCccCCCCCcchHHHHHHHHHHcCCCceEEEecCCCCHH-----------HHHHHHHhCcCEEEecHH
Q 017781 239 VQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGT-----------DVFKALALGASGIFIGRP 307 (366)
Q Consensus 239 ~~aGad~I~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~i~vi~~GGI~~~~-----------dv~kalalGAd~V~igr~ 307 (366)
.+.|+|+++++.+ .+..+++..+ .--+++.+||+ +. .+-.++..|||.+.+||+
T Consensus 145 ~~~g~dgvv~~~~-------------~~~~ir~~~~-~~~~~v~pGI~-~~g~~~~dq~~~~~~~~ai~~Gad~iVvGR~ 209 (230)
T PRK00230 145 QEAGLDGVVCSAQ-------------EAAAIREATG-PDFLLVTPGIR-PAGSDAGDQKRVMTPAQAIAAGSDYIVVGRP 209 (230)
T ss_pred HHcCCeEEEeChH-------------HHHHHHhhcC-CceEEEcCCcC-CCCCCcchHHHHhCHHHHHHcCCCEEEECCc
Confidence 6789999987542 1344555543 33457779998 33 477788899999999999
Q ss_pred HHHHhhhcCHHHHHHHHHHHHHHHH
Q 017781 308 VVYSLAAEGEKGVRRVLEMLREEFE 332 (366)
Q Consensus 308 ~l~~l~~~G~~gv~~~~~~l~~el~ 332 (366)
+..+ .-+ ....+.+.+++.
T Consensus 210 I~~a---~dP---~~~a~~i~~~i~ 228 (230)
T PRK00230 210 ITQA---ADP---AAAYEAILAEIA 228 (230)
T ss_pred ccCC---CCH---HHHHHHHHHHhh
Confidence 8643 122 234455555543
|
|
| >PRK05458 guanosine 5'-monophosphate oxidoreductase; Provisional | Back alignment and domain information |
|---|
Probab=92.29 E-value=1.2 Score=43.56 Aligned_cols=61 Identities=18% Similarity=0.152 Sum_probs=46.3
Q ss_pred HHcCC--cEEEEcCCCccCCCCCcchHHHHHHHHHHcCCCceEEEecCCCCHHHHHHHHHhCcCEEEec
Q 017781 239 VQAGA--AGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFIG 305 (366)
Q Consensus 239 ~~aGa--d~I~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~i~vi~~GGI~~~~dv~kalalGAd~V~ig 305 (366)
.++|+ |.|.++...| .+....+.+.++++..+ ++|||+ |.|.|.+++..++.+|||++.+|
T Consensus 106 v~ag~~~d~i~iD~a~g----h~~~~~e~I~~ir~~~p-~~~vi~-g~V~t~e~a~~l~~aGad~i~vg 168 (326)
T PRK05458 106 AAEGLTPEYITIDIAHG----HSDSVINMIQHIKKHLP-ETFVIA-GNVGTPEAVRELENAGADATKVG 168 (326)
T ss_pred HhcCCCCCEEEEECCCC----chHHHHHHHHHHHhhCC-CCeEEE-EecCCHHHHHHHHHcCcCEEEEC
Confidence 88855 9999865333 23456677888887663 466655 67889999999999999999877
|
|
| >cd00950 DHDPS Dihydrodipicolinate synthase (DHDPS) is a key enzyme in lysine biosynthesis | Back alignment and domain information |
|---|
Probab=92.28 E-value=10 Score=35.88 Aligned_cols=84 Identities=17% Similarity=0.051 Sum_probs=51.7
Q ss_pred CceEecccccccccCChhhHHHHHHHHHcCCceec--C---CCCCCCHHHHhc-------cCC--CceEEEeeecCCHHH
Q 017781 72 MPIMIAPTAMQKMAHPEGEYATARAASAAGTIMTL--S---SWSTSSVEEVAS-------TGP--GIRFFQLYVYKDRNV 137 (366)
Q Consensus 72 ~Pi~iApm~~~~l~~~~~e~~la~aa~~~G~~~~v--s---~~~~~~~e~i~~-------~~~--~~~~~Qly~~~d~~~ 137 (366)
.|..+.|+.-..-.+.++-....+-+.+.|+...+ + ++.+.+.+|..+ ... .+.++++. ..+.+.
T Consensus 5 ~~~~~TPf~~dg~iD~~~~~~~i~~l~~~Gv~gl~v~GstGE~~~lt~~Er~~l~~~~~~~~~~~~~vi~gv~-~~~~~~ 83 (284)
T cd00950 5 ITALVTPFKDDGSVDFDALERLIEFQIENGTDGLVVCGTTGESPTLSDEEHEAVIEAVVEAVNGRVPVIAGTG-SNNTAE 83 (284)
T ss_pred eeeeeCCcCCCCCcCHHHHHHHHHHHHHcCCCEEEECCCCcchhhCCHHHHHHHHHHHHHHhCCCCcEEeccC-CccHHH
Confidence 35566777433334444456777788888875543 2 333456665432 222 34556654 245667
Q ss_pred HHHHHHHHHHcCCCEEEEe
Q 017781 138 VAQLVRRAERAGFKAIALT 156 (366)
Q Consensus 138 ~~~~l~ra~~~G~~ai~vt 156 (366)
+.++++.|+++|++++++.
T Consensus 84 ~~~~a~~a~~~G~d~v~~~ 102 (284)
T cd00950 84 AIELTKRAEKAGADAALVV 102 (284)
T ss_pred HHHHHHHHHHcCCCEEEEc
Confidence 7888899999999998873
|
It catalyzes the aldol condensation of L-aspartate-beta- semialdehyde and pyruvate to dihydropicolinic acid via a Schiff base formation between pyruvate and a lysine residue. The functional enzyme is a homotetramer consisting of a dimer of dimers. DHDPS is member of dihydrodipicolinate synthase family that comprises several pyruvate-dependent class I aldolases that use the same catalytic step to catalyze different reactions in different pathways. |
| >PRK05567 inosine 5'-monophosphate dehydrogenase; Reviewed | Back alignment and domain information |
|---|
Probab=92.21 E-value=0.47 Score=49.01 Aligned_cols=248 Identities=16% Similarity=0.218 Sum_probs=130.0
Q ss_pred cccceeeeccccC-CCCCCccceeEc-CcccCCceEecccccccccCChhhHHHHHHHHHcCCceecCCCCCCCHHHHhc
Q 017781 42 AFSRILFRPRILI-DVSKIDMNTTVL-GFKISMPIMIAPTAMQKMAHPEGEYATARAASAAGTIMTLSSWSTSSVEEVAS 119 (366)
Q Consensus 42 ~f~~i~l~pr~l~-~~~~vd~st~l~-g~~l~~Pi~iApm~~~~l~~~~~e~~la~aa~~~G~~~~vs~~~~~~~e~i~~ 119 (366)
.|||+.|+|.... ..+++|++|.+. +..+..||+.|||...+ +.+++.+.++.|...+++. +++.++..+
T Consensus 10 t~ddv~l~p~~~~~~~~~~~~~t~l~~~~~~~~Piv~a~m~~vT------~~ela~ava~~GglG~i~~--~~~~e~~~~ 81 (486)
T PRK05567 10 TFDDVLLVPAHSEVLPNDVDLSTQLTKNIRLNIPLLSAAMDTVT------EARMAIAMAREGGIGVIHK--NMSIEEQAE 81 (486)
T ss_pred CccceEecccccCcCcccccccchhhhhcCcCcCEEeCCCCCcC------HHHHHHHHHhCCCCCEecC--CCCHHHHHH
Confidence 5999999998653 456899998875 57788999999997654 6788888899988888863 445554422
Q ss_pred c------CCCceEEEeeecCCHHHHHHHHHHHHHcCCCEEEEecCCCC-Cc-chhHHHhhhcCCCCccccccccc-cccC
Q 017781 120 T------GPGIRFFQLYVYKDRNVVAQLVRRAERAGFKAIALTVDTPR-LG-RREADIKNRFTLPPFLTLKNFQG-LDLG 190 (366)
Q Consensus 120 ~------~~~~~~~Qly~~~d~~~~~~~l~ra~~~G~~ai~vtvd~p~-~g-~r~~d~~~~~~~p~~~~~~~~~~-~~~~ 190 (366)
. ......-++..-.......+.++...+.++..+.|.-+... .| -..+|+....... .....+.. ....
T Consensus 82 ~I~~vk~~~dim~~~~v~i~~~~tv~ea~~~m~~~~~~~lpVvd~~g~lvGiVt~~DL~~~~~~~--~~V~dim~~~~~v 159 (486)
T PRK05567 82 EVRKVKRSESGVVTDPVTVTPDTTLAEALALMARYGISGVPVVDENGKLVGIITNRDVRFETDLS--QPVSEVMTKERLV 159 (486)
T ss_pred HHHHhhhhhhcccCCCeEeCCCCCHHHHHHHHHHhCCCEEEEEccCCEEEEEEEHHHhhhcccCC--CcHHHHcCCCCCE
Confidence 1 01000001111112233455666667777777665422100 01 0112222100000 00000000 0000
Q ss_pred CCcc-ccchhhHHHhhhc-------c--C----CCCCHHHH-HHHHHh-----cCCCEEEEeccC--H---HH----HHc
Q 017781 191 KMDE-ANDSGLAAYVAGQ-------I--D----RSLSWKDV-KWLQTI-----TKLPILVKGVLT--A---ED----VQA 241 (366)
Q Consensus 191 ~~~~-~~~~~~~~~~~~~-------~--d----~~~~~~~i-~~lr~~-----~~~pv~vK~v~~--~---~d----~~a 241 (366)
.+.. .........+... . + .-.+.+++ +.+... ....+.+....+ + +. .++
T Consensus 160 ~v~~~~sl~eal~~m~~~~~~~lpVVDe~g~lvGiIT~~DLl~~~~~p~a~~d~~g~l~V~aai~~~~~~~e~a~~L~~a 239 (486)
T PRK05567 160 TVPEGTTLEEALELLHEHRIEKLPVVDDNGRLKGLITVKDIEKAEEFPNACKDEQGRLRVGAAVGVGADNEERAEALVEA 239 (486)
T ss_pred EECCCCCHHHHHHHHHHcCCCEEEEEcCCCcEEEEEEhHHhhhhhhCCCcccccCCCEEEEeecccCcchHHHHHHHHHh
Confidence 0000 0000000000000 0 0 01133332 222110 122455555433 2 22 899
Q ss_pred CCcEEEEcCCCccCCCCCcchHHHHHHHHHHcCCCceEEEecCCCCHHHHHHHHHhCcCEEEec
Q 017781 242 GAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFIG 305 (366)
Q Consensus 242 Gad~I~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~i~vi~~GGI~~~~dv~kalalGAd~V~ig 305 (366)
|+|.|++....|+. ...++.+.++++..+ ++||++ |+|.|.+++..++.+|||+|-+|
T Consensus 240 gvdvivvD~a~g~~----~~vl~~i~~i~~~~p-~~~vi~-g~v~t~e~a~~l~~aGad~i~vg 297 (486)
T PRK05567 240 GVDVLVVDTAHGHS----EGVLDRVREIKAKYP-DVQIIA-GNVATAEAARALIEAGADAVKVG 297 (486)
T ss_pred CCCEEEEECCCCcc----hhHHHHHHHHHhhCC-CCCEEE-eccCCHHHHHHHHHcCCCEEEEC
Confidence 99999886532321 235667777877653 688888 99999999999999999999775
|
|
| >PRK08255 salicylyl-CoA 5-hydroxylase; Reviewed | Back alignment and domain information |
|---|
Probab=92.18 E-value=4.6 Score=44.16 Aligned_cols=216 Identities=15% Similarity=0.189 Sum_probs=103.7
Q ss_pred ceeEcCcccCCceEecccccccccCChh-----hHHHHHHHHHcCCceecCCCCCCCHHHHhccCCCceEEEeeecCCHH
Q 017781 62 NTTVLGFKISMPIMIAPTAMQKMAHPEG-----EYATARAASAAGTIMTLSSWSTSSVEEVASTGPGIRFFQLYVYKDRN 136 (366)
Q Consensus 62 st~l~g~~l~~Pi~iApm~~~~l~~~~~-----e~~la~aa~~~G~~~~vs~~~~~~~e~i~~~~~~~~~~Qly~~~d~~ 136 (366)
-.+|.|+++++-|+++||.... ..++ ..+.-..-++-|+++++.+....+.+. ...+ ....+|....-+
T Consensus 402 P~~i~~~~l~NRi~~~pm~~~~--~~~g~~t~~~~~~y~~rA~gG~glii~e~~~v~~~g--~~~~--~~~~~~~d~~i~ 475 (765)
T PRK08255 402 PFRLRGLTLKNRVVVSPMAMYS--AVDGVPGDFHLVHLGARALGGAGLVMTEMTCVSPEG--RITP--GCPGLYNDEQEA 475 (765)
T ss_pred ccccCCEeeCCCccccCccccc--CCCCCCCHHHHHHHHHHHcCCCcEEEECCeEECCCc--CCCC--CCCccCCHHHHH
Confidence 3567889999999999995322 2222 234444555568888876654333211 1111 112234222234
Q ss_pred HHHHHHHHHHHc-CCCEEEEecCCCCCcchhHHHhhhc---CCCCccccccccccccCCCccccchhhHHHhhhccCCCC
Q 017781 137 VVAQLVRRAERA-GFKAIALTVDTPRLGRREADIKNRF---TLPPFLTLKNFQGLDLGKMDEANDSGLAAYVAGQIDRSL 212 (366)
Q Consensus 137 ~~~~~l~ra~~~-G~~ai~vtvd~p~~g~r~~d~~~~~---~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~ 212 (366)
..+++.+.+.+. |++. .+-+..+ |..... ...+ ..|. . . .+......+ . ............+
T Consensus 476 ~~~~~~~~vh~~gg~~i-~~QL~h~--Gr~~~~-~~~~~~~~~~~--~-~--~~~~~~~pS--~---~~~~~~~~~p~~m 541 (765)
T PRK08255 476 AWKRIVDFVHANSDAKI-GIQLGHS--GRKGST-RLGWEGIDEPL--E-E--GNWPLISAS--P---LPYLPGSQVPREM 541 (765)
T ss_pred HHHHHHHHHHhcCCceE-EEEccCC--cccccc-ccccccccccc--c-c--CCCceeCCC--C---CcCCCCCCCCCcC
Confidence 566677777777 4654 3444332 221100 0000 0000 0 0 000000000 0 0000000011246
Q ss_pred CHHHHHHHHHhcCCCEEEEeccCHHH-HHcCCcEEEEcCCCcc---C----------CC-CCc------chHHHHHHHHH
Q 017781 213 SWKDVKWLQTITKLPILVKGVLTAED-VQAGAAGIIVSNHGAR---Q----------LD-YVP------ATIMALEEVVK 271 (366)
Q Consensus 213 ~~~~i~~lr~~~~~pv~vK~v~~~~d-~~aGad~I~vs~~gg~---~----------~~-~~~------~~~~~l~~i~~ 271 (366)
+.++|+++.+.+- ..... .++|+|+|.++...|+ | -. +|- -..+.+..|++
T Consensus 542 t~~eI~~~i~~f~--------~aA~~a~~aGfDgveih~ahGyLl~qFlsp~~N~RtD~yGGslenR~r~~~eiv~~ir~ 613 (765)
T PRK08255 542 TRADMDRVRDDFV--------AAARRAAEAGFDWLELHCAHGYLLSSFISPLTNQRTDEYGGSLENRLRYPLEVFRAVRA 613 (765)
T ss_pred CHHHHHHHHHHHH--------HHHHHHHHcCCCEEEEecccchHHHHhcCCCCCCCCCCCCCCHHHHhHHHHHHHHHHHH
Confidence 7788888877642 01122 8899999999754332 1 11 221 13466777777
Q ss_pred HcCCCceEEE--------ecCCC--CHHHHHHHHH-hCcCEEEec
Q 017781 272 ATQGRIPVFL--------DGGVR--RGTDVFKALA-LGASGIFIG 305 (366)
Q Consensus 272 ~~~~~i~vi~--------~GGI~--~~~dv~kala-lGAd~V~ig 305 (366)
+++.++||.+ .||.. ...+++|.|+ .|+|.+-|.
T Consensus 614 ~~~~~~~v~~ri~~~~~~~~g~~~~~~~~~~~~l~~~g~d~i~vs 658 (765)
T PRK08255 614 VWPAEKPMSVRISAHDWVEGGNTPDDAVEIARAFKAAGADLIDVS 658 (765)
T ss_pred hcCCCCeeEEEEccccccCCCCCHHHHHHHHHHHHhcCCcEEEeC
Confidence 7765666543 23331 2235667776 799999885
|
|
| >PF05690 ThiG: Thiazole biosynthesis protein ThiG; InterPro: IPR008867 This family consists of several bacterial thiazole biosynthesis protein G sequences | Back alignment and domain information |
|---|
Probab=92.02 E-value=0.56 Score=43.48 Aligned_cols=38 Identities=21% Similarity=0.442 Sum_probs=28.5
Q ss_pred CCHHHHHHHHHhcCCCEEEE-eccCHHH----HHcCCcEEEEc
Q 017781 212 LSWKDVKWLQTITKLPILVK-GVLTAED----VQAGAAGIIVS 249 (366)
Q Consensus 212 ~~~~~i~~lr~~~~~pv~vK-~v~~~~d----~~aGad~I~vs 249 (366)
.+...++.+++..++||||- |+.++.| .+.|+|+|-|-
T Consensus 162 ~n~~~l~~i~~~~~vPvIvDAGiG~pSdaa~AMElG~daVLvN 204 (247)
T PF05690_consen 162 QNPYNLRIIIERADVPVIVDAGIGTPSDAAQAMELGADAVLVN 204 (247)
T ss_dssp STHHHHHHHHHHGSSSBEEES---SHHHHHHHHHTT-SEEEES
T ss_pred CCHHHHHHHHHhcCCcEEEeCCCCCHHHHHHHHHcCCceeehh
Confidence 35677999999999999998 5567766 99999999763
|
ThiG, together with ThiF and ThiH, is proposed to be involved in the synthesis of 4-methyl-5-(b-hydroxyethyl)thiazole (THZ) which is an intermediate in the thiazole production pathway [].; GO: 0009228 thiamine biosynthetic process; PDB: 1WV2_B 1TYG_C 1XM3_B 2HTM_C 2YZR_C. |
| >TIGR00262 trpA tryptophan synthase, alpha subunit | Back alignment and domain information |
|---|
Probab=91.97 E-value=2.9 Score=39.41 Aligned_cols=38 Identities=34% Similarity=0.402 Sum_probs=31.3
Q ss_pred CHHHHHHHHHhcCCCEEEEec-cCHHH----HHcCCcEEEEcC
Q 017781 213 SWKDVKWLQTITKLPILVKGV-LTAED----VQAGAAGIIVSN 250 (366)
Q Consensus 213 ~~~~i~~lr~~~~~pv~vK~v-~~~~d----~~aGad~I~vs~ 250 (366)
..+.++++|+.++.||++-+. .++++ .++|||+++|..
T Consensus 186 ~~~~i~~lr~~~~~pi~vgfGI~~~e~~~~~~~~GADgvVvGS 228 (256)
T TIGR00262 186 LNELVKRLKAYSAKPVLVGFGISKPEQVKQAIDAGADGVIVGS 228 (256)
T ss_pred HHHHHHHHHhhcCCCEEEeCCCCCHHHHHHHHHcCCCEEEECH
Confidence 456799999999999999865 45877 889999999854
|
Tryptophan synthase catalyzes the last step in the biosynthesis of tryptophan. The alpha chain is responsible for the aldol cleavage of indoleglycerol phosphate to indole and glyceraldehyde 3-phosphate. In bacteria and plants each domain is found on a separate subunit (alpha and beta chains), while in fungi the two domains are fused together on a single multifunctional protein. The signature pattern for trpA contains three conserved acidic residues. [LIVM]-E-[LIVM]-G-x(2)-[FYC]-[ST]-[DE]-[PA]-[LIVMY]-[AGLI]-[DE]-G and this is located between residues 43-58 of the model. The Sulfolobus solfataricus trpA is known to be quite divergent from other known trpA sequences. |
| >COG2022 ThiG Uncharacterized enzyme of thiazole biosynthesis [Nucleotide transport and metabolism] | Back alignment and domain information |
|---|
Probab=91.95 E-value=0.99 Score=41.75 Aligned_cols=38 Identities=18% Similarity=0.413 Sum_probs=31.0
Q ss_pred CCHHHHHHHHHhcCCCEEEE-eccCHHH----HHcCCcEEEEc
Q 017781 212 LSWKDVKWLQTITKLPILVK-GVLTAED----VQAGAAGIIVS 249 (366)
Q Consensus 212 ~~~~~i~~lr~~~~~pv~vK-~v~~~~d----~~aGad~I~vs 249 (366)
.+...++-+++..++||||- |+.++.| .|.|+|+|-+.
T Consensus 169 ~n~~~l~iiie~a~VPviVDAGiG~pSdAa~aMElG~DaVL~N 211 (262)
T COG2022 169 QNPYNLEIIIEEADVPVIVDAGIGTPSDAAQAMELGADAVLLN 211 (262)
T ss_pred CCHHHHHHHHHhCCCCEEEeCCCCChhHHHHHHhcccceeehh
Confidence 35678899999999999998 5566665 99999999753
|
|
| >COG4981 Enoyl reductase domain of yeast-type FAS1 [Lipid metabolism] | Back alignment and domain information |
|---|
Probab=91.90 E-value=4.9 Score=41.62 Aligned_cols=214 Identities=18% Similarity=0.309 Sum_probs=107.8
Q ss_pred eccccCC-CCCCccceeEcCcccCCceEecccccccccCChhhHHHHHHHHHcCCceecCCCCCCCHH-------HHhcc
Q 017781 49 RPRILID-VSKIDMNTTVLGFKISMPIMIAPTAMQKMAHPEGEYATARAASAAGTIMTLSSWSTSSVE-------EVAST 120 (366)
Q Consensus 49 ~pr~l~~-~~~vd~st~l~g~~l~~Pi~iApm~~~~l~~~~~e~~la~aa~~~G~~~~vs~~~~~~~e-------~i~~~ 120 (366)
-|+.... ...+-++|.|--+.=..|+++|-|+=.+ .+..+..+++++|--.-+......+.| .+...
T Consensus 11 aPklvk~~~Gr~~v~TkfsrLtGr~PillaGMTPtT-----Vdp~ivAAaAnAGhwaELAGGGq~t~e~~~~~i~ql~~~ 85 (717)
T COG4981 11 APKLVKLPDGRVKVSTKFSRLTGRSPILLAGMTPTT-----VDPDIVAAAANAGHWAELAGGGQVTEEIFTNAIEQLVSL 85 (717)
T ss_pred CcceEecCCCcEEEeechhhhcCCCCeeecCCCCCc-----CCHHHHHHHhcCCceeeecCCcccCHHHHHHHHHHHHhc
Confidence 3555443 2345566665544445799999987544 255788888888876666544333322 22211
Q ss_pred C-CC-ceEEE-ee----ecCCHHHHHHHHHHHHHcCCC--EEEEecCCCCCcchhHHHhhhcCCCCccccccccccccCC
Q 017781 121 G-PG-IRFFQ-LY----VYKDRNVVAQLVRRAERAGFK--AIALTVDTPRLGRREADIKNRFTLPPFLTLKNFQGLDLGK 191 (366)
Q Consensus 121 ~-~~-~~~~Q-ly----~~~d~~~~~~~l~ra~~~G~~--ai~vtvd~p~~g~r~~d~~~~~~~p~~~~~~~~~~~~~~~ 191 (366)
. |+ .+-|+ +| .++-.=--.++++++++.|+. .++|+.+.|..- -..++.+.+ .+.
T Consensus 86 lepG~t~qfN~ifldpylw~~qig~krLv~kara~G~~I~gvvIsAGIP~le-~A~ElI~~L-----------~~~---- 149 (717)
T COG4981 86 LEPGRTAQFNSIFLDPYLWKLQIGGKRLVQKARASGAPIDGVVISAGIPSLE-EAVELIEEL-----------GDD---- 149 (717)
T ss_pred cCCCccceeeEEEechHHhhhcCChHHHHHHHHhcCCCcceEEEecCCCcHH-HHHHHHHHH-----------hhc----
Confidence 1 11 11222 12 111100124578888888765 566665555320 001111110 000
Q ss_pred CccccchhhHHHhhhccCCCCCHHHHHHHHHhc----CCCEEEEeccCHHHHHcCCcEEEEcCCCccCCCC---CcchHH
Q 017781 192 MDEANDSGLAAYVAGQIDRSLSWKDVKWLQTIT----KLPILVKGVLTAEDVQAGAAGIIVSNHGARQLDY---VPATIM 264 (366)
Q Consensus 192 ~~~~~~~~~~~~~~~~~d~~~~~~~i~~lr~~~----~~pv~vK~v~~~~d~~aGad~I~vs~~gg~~~~~---~~~~~~ 264 (366)
+. .|+. ..| =+.+.|+.+.+.. ..||++-. -.+++|...++ --+.+.
T Consensus 150 -------G~-~yv~--fKP-GtIeqI~svi~IAka~P~~pIilq~---------------egGraGGHHSweDld~llL~ 203 (717)
T COG4981 150 -------GF-PYVA--FKP-GTIEQIRSVIRIAKANPTFPIILQW---------------EGGRAGGHHSWEDLDDLLLA 203 (717)
T ss_pred -------Cc-eeEE--ecC-CcHHHHHHHHHHHhcCCCCceEEEE---------------ecCccCCccchhhcccHHHH
Confidence 00 0110 011 1444444443332 46766542 12332211111 122334
Q ss_pred HHHHHHHHcCCCceEEEecCCCCHHHHHHHHH------hC-----cCEEEecHHHHHH
Q 017781 265 ALEEVVKATQGRIPVFLDGGVRRGTDVFKALA------LG-----ASGIFIGRPVVYS 311 (366)
Q Consensus 265 ~l~~i~~~~~~~i~vi~~GGI~~~~dv~kala------lG-----Ad~V~igr~~l~~ 311 (366)
...++++. +++.+++-|||.+++|.+.+|- .| .|++.+|++.|.+
T Consensus 204 tYs~lR~~--~NIvl~vGgGiGtp~~aa~YLTGeWSt~~g~P~MP~DGiLvGtaaMat 259 (717)
T COG4981 204 TYSELRSR--DNIVLCVGGGIGTPDDAAPYLTGEWSTAYGFPPMPFDGILVGTAAMAT 259 (717)
T ss_pred HHHHHhcC--CCEEEEecCCcCChhhcccccccchhhhcCCCCCCcceeEechhHHhh
Confidence 44555542 3799999999999999997762 33 5999999988753
|
|
| >cd04739 DHOD_like Dihydroorotate dehydrogenase (DHOD) like proteins | Back alignment and domain information |
|---|
Probab=91.86 E-value=2.7 Score=41.03 Aligned_cols=183 Identities=18% Similarity=0.185 Sum_probs=98.3
Q ss_pred CCceEecccccccccCChhhHHHHHHHHHcCCcee---cCCCCC------CC--------HHHHhccCCCceEEEeeecC
Q 017781 71 SMPIMIAPTAMQKMAHPEGEYATARAASAAGTIMT---LSSWST------SS--------VEEVASTGPGIRFFQLYVYK 133 (366)
Q Consensus 71 ~~Pi~iApm~~~~l~~~~~e~~la~aa~~~G~~~~---vs~~~~------~~--------~e~i~~~~~~~~~~Qly~~~ 133 (366)
..|++++=+ +. .++.-..+++.++++|+.+. +|.... .. ++.+++....|.++.|-+.
T Consensus 99 ~~pvi~si~-g~---~~~~~~~~a~~~~~~gad~iElN~s~~~~~~~~~g~~~~~~~~eiv~~v~~~~~iPv~vKl~p~- 173 (325)
T cd04739 99 SIPVIASLN-GV---SAGGWVDYARQIEEAGADALELNIYALPTDPDISGAEVEQRYLDILRAVKSAVTIPVAVKLSPF- 173 (325)
T ss_pred CCeEEEEeC-CC---CHHHHHHHHHHHHhcCCCEEEEeCCCCCCCCCcccchHHHHHHHHHHHHHhccCCCEEEEcCCC-
Confidence 578776633 22 23333588888888886554 221100 01 1222333336788887542
Q ss_pred CHHHHHHHHHHHHHcCCCEEEEecCCCCCcchhHHHhhhcCCCCccccccccccccCCCccccchhhHHHhhhccCCCCC
Q 017781 134 DRNVVAQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLTLKNFQGLDLGKMDEANDSGLAAYVAGQIDRSLS 213 (366)
Q Consensus 134 d~~~~~~~l~ra~~~G~~ai~vtvd~p~~g~r~~d~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~ 213 (366)
...+.++++.++++|+++++++--.+.. .-|+...-..+. .. ++.....+..
T Consensus 174 -~~~~~~~a~~l~~~Gadgi~~~nt~~~~---~id~~~~~~~~~-------~g-----------------lSG~~~~~~a 225 (325)
T cd04739 174 -FSALAHMAKQLDAAGADGLVLFNRFYQP---DIDLETLEVVPN-------LL-----------------LSSPAEIRLP 225 (325)
T ss_pred -ccCHHHHHHHHHHcCCCeEEEEcCcCCC---CccccccceecC-------CC-----------------cCCccchhHH
Confidence 2346778888999999999875332211 001000000000 00 0100111245
Q ss_pred HHHHHHHHHhcCCCEEEE-eccCHHH----HHcCCcEEEEcCCCccCCCCCcchH-HHHHHHHHHcCCCceEEEecCCCC
Q 017781 214 WKDVKWLQTITKLPILVK-GVLTAED----VQAGAAGIIVSNHGARQLDYVPATI-MALEEVVKATQGRIPVFLDGGVRR 287 (366)
Q Consensus 214 ~~~i~~lr~~~~~pv~vK-~v~~~~d----~~aGad~I~vs~~gg~~~~~~~~~~-~~l~~i~~~~~~~i~vi~~GGI~~ 287 (366)
++.+.++++..++||+.= |+.+.+| ..+|||+|.+...- +..|+..+ ..+.++.+++. .-|+.+
T Consensus 226 l~~v~~v~~~~~ipIig~GGI~s~~Da~e~l~aGA~~Vqv~ta~---~~~gp~~~~~i~~~L~~~l~-------~~g~~~ 295 (325)
T cd04739 226 LRWIAILSGRVKASLAASGGVHDAEDVVKYLLAGADVVMTTSAL---LRHGPDYIGTLLAGLEAWME-------EHGYES 295 (325)
T ss_pred HHHHHHHHcccCCCEEEECCCCCHHHHHHHHHcCCCeeEEehhh---hhcCchHHHHHHHHHHHHHH-------HcCCCC
Confidence 777888888889998854 5788888 77999999875311 12233322 33444444431 257888
Q ss_pred HHHHHHHHH
Q 017781 288 GTDVFKALA 296 (366)
Q Consensus 288 ~~dv~kala 296 (366)
-.|+.-.++
T Consensus 296 i~e~~G~~~ 304 (325)
T cd04739 296 VQQLRGSMS 304 (325)
T ss_pred HHHHhcccc
Confidence 888764433
|
DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences and cellular location. Members of class 1 are cytosolic enzymes and multimers while class 2 enzymes are membrane associated and monomeric. The class 1 enzymes can be further divided into subtypes 1A and 1B which are homodimers and heterotetrameric proteins, respectively. This subgroup has the conserved FMN binding site, but lacks some catalytic residues and may therefore be inactive. |
| >PRK09427 bifunctional indole-3-glycerol phosphate synthase/phosphoribosylanthranilate isomerase; Provisional | Back alignment and domain information |
|---|
Probab=91.65 E-value=1.6 Score=44.67 Aligned_cols=82 Identities=20% Similarity=0.210 Sum_probs=50.5
Q ss_pred HHHHHHHHHhcCCC-EEE--EeccCHHH---HHcCCcEEEEcCCCccCCCCCcchHHHHHHHHHHcCCCceEEEecCCCC
Q 017781 214 WKDVKWLQTITKLP-ILV--KGVLTAED---VQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRR 287 (366)
Q Consensus 214 ~~~i~~lr~~~~~p-v~v--K~v~~~~d---~~aGad~I~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~i~vi~~GGI~~ 287 (366)
.+...++....+.. ++| =|+.+++| ...|+|++.|... +-..+.....+.++.. ..+.| .|+++
T Consensus 197 ~~~~~~l~~~ip~~~~~vseSGI~t~~d~~~~~~~~davLiG~~----lm~~~d~~~~~~~L~~---~~vKI---CGit~ 266 (454)
T PRK09427 197 LNRTRELAPLIPADVIVISESGIYTHAQVRELSPFANGFLIGSS----LMAEDDLELAVRKLIL---GENKV---CGLTR 266 (454)
T ss_pred HHHHHHHHhhCCCCcEEEEeCCCCCHHHHHHHHhcCCEEEECHH----HcCCCCHHHHHHHHhc---ccccc---CCCCC
Confidence 34455555554322 222 26778888 5568999987432 2223333444444432 12222 57999
Q ss_pred HHHHHHHHHhCcCEEEec
Q 017781 288 GTDVFKALALGASGIFIG 305 (366)
Q Consensus 288 ~~dv~kalalGAd~V~ig 305 (366)
.+|+..+..+|||++++=
T Consensus 267 ~eda~~a~~~GaD~lGfI 284 (454)
T PRK09427 267 PQDAKAAYDAGAVYGGLI 284 (454)
T ss_pred HHHHHHHHhCCCCEEeeE
Confidence 999999999999999883
|
|
| >TIGR01361 DAHP_synth_Bsub phospho-2-dehydro-3-deoxyheptonate aldolase | Back alignment and domain information |
|---|
Probab=91.62 E-value=2.1 Score=40.53 Aligned_cols=94 Identities=24% Similarity=0.375 Sum_probs=59.4
Q ss_pred CHHHHHHHHHhcCCCEEEEecc--CHHH--------HHcCCcEEEEcCCCccCCC---CCcchHHHHHHHHHHcCCCceE
Q 017781 213 SWKDVKWLQTITKLPILVKGVL--TAED--------VQAGAAGIIVSNHGARQLD---YVPATIMALEEVVKATQGRIPV 279 (366)
Q Consensus 213 ~~~~i~~lr~~~~~pv~vK~v~--~~~d--------~~aGad~I~vs~~gg~~~~---~~~~~~~~l~~i~~~~~~~i~v 279 (366)
....++.+.+ +++||++|..+ +.++ .+.|.+-|++--.|-+... .-...+..+..+++.. .+||
T Consensus 121 n~~LL~~~a~-~gkPVilk~G~~~t~~e~~~Ave~i~~~Gn~~i~l~~rG~s~y~~~~~~~~dl~~i~~lk~~~--~~pV 197 (260)
T TIGR01361 121 NFELLKEVGK-QGKPVLLKRGMGNTIEEWLYAAEYILSSGNGNVILCERGIRTFEKATRNTLDLSAVPVLKKET--HLPI 197 (260)
T ss_pred CHHHHHHHhc-CCCcEEEeCCCCCCHHHHHHHHHHHHHcCCCcEEEEECCCCCCCCCCcCCcCHHHHHHHHHhh--CCCE
Confidence 3455666654 58999999653 5766 6678865655332322221 1124567777777655 6899
Q ss_pred EEec----CCCC--HHHHHHHHHhCcCEEEecHHHH
Q 017781 280 FLDG----GVRR--GTDVFKALALGASGIFIGRPVV 309 (366)
Q Consensus 280 i~~G----GI~~--~~dv~kalalGAd~V~igr~~l 309 (366)
+.|. |.|. ..-...|+++||++++|-+-|-
T Consensus 198 ~~ds~Hs~G~r~~~~~~~~aAva~Ga~gl~iE~H~t 233 (260)
T TIGR01361 198 IVDPSHAAGRRDLVIPLAKAAIAAGADGLMIEVHPD 233 (260)
T ss_pred EEcCCCCCCccchHHHHHHHHHHcCCCEEEEEeCCC
Confidence 9943 3222 2344478899999999988653
|
The member of this family from Synechocystis PCC 6803, CcmA, was shown to be essential for carboxysome formation. However, no other candidate for this enzyme is present in that species, chorismate biosynthesis does occur, other species having this protein lack carboxysomes but appear to make chorismate, and a requirement of CcmA for carboxysome formation does not prohibit a role in chorismate biosynthesis. |
| >COG0135 TrpF Phosphoribosylanthranilate isomerase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=91.61 E-value=1.3 Score=40.47 Aligned_cols=95 Identities=17% Similarity=0.211 Sum_probs=65.2
Q ss_pred cCCCCCHHHHHHHHHhcCCCEEEEeccCHH---H----HHcCCcEEEEcCCCcc-C-CCCCcchHHHHHHHHHHcCCCce
Q 017781 208 IDRSLSWKDVKWLQTITKLPILVKGVLTAE---D----VQAGAAGIIVSNHGAR-Q-LDYVPATIMALEEVVKATQGRIP 278 (366)
Q Consensus 208 ~d~~~~~~~i~~lr~~~~~pv~vK~v~~~~---d----~~aGad~I~vs~~gg~-~-~~~~~~~~~~l~~i~~~~~~~i~ 278 (366)
.+.+.+.+.++.+++..++||+--.....+ . ...-+|.+.+...... . ..+-.-.|+.++.. .. ..|
T Consensus 81 lHG~e~~~~~~~l~~~~~~~v~kai~v~~~~~~~~~~~~~~~~d~~LlDa~~~~~~GGtG~~fDW~~l~~~--~~--~~~ 156 (208)
T COG0135 81 LHGDEDPEYIDQLKEELGVPVIKAISVSEEGDLELAAREEGPVDAILLDAKVPGLPGGTGQTFDWNLLPKL--RL--SKP 156 (208)
T ss_pred ECCCCCHHHHHHHHhhcCCceEEEEEeCCccchhhhhhccCCccEEEEcCCCCCCCCCCCcEECHHHhccc--cc--cCC
Confidence 355678899999999888886644443321 1 5566899998875211 1 11223467777655 12 678
Q ss_pred EEEecCCCCHHHHHHHHHhCc-CEEEecHH
Q 017781 279 VFLDGGVRRGTDVFKALALGA-SGIFIGRP 307 (366)
Q Consensus 279 vi~~GGI~~~~dv~kalalGA-d~V~igr~ 307 (366)
++..||| +++.|.+|++++. .+|=+.+-
T Consensus 157 ~~LAGGL-~p~NV~~ai~~~~p~gvDvSSG 185 (208)
T COG0135 157 VMLAGGL-NPDNVAEAIALGPPYGVDVSSG 185 (208)
T ss_pred EEEECCC-CHHHHHHHHHhcCCceEEeccc
Confidence 9999999 7999999999987 77776643
|
|
| >cd00945 Aldolase_Class_I Class I aldolases | Back alignment and domain information |
|---|
Probab=91.48 E-value=1.6 Score=38.47 Aligned_cols=77 Identities=21% Similarity=0.182 Sum_probs=48.6
Q ss_pred HHcCCcEEEEcCCCccCCCCCcchHHHHHHHHHHcCC-CceEEEecCCCC--------HHHHHHHHHhCcCEEEecHHHH
Q 017781 239 VQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQG-RIPVFLDGGVRR--------GTDVFKALALGASGIFIGRPVV 309 (366)
Q Consensus 239 ~~aGad~I~vs~~gg~~~~~~~~~~~~l~~i~~~~~~-~i~vi~~GGI~~--------~~dv~kalalGAd~V~igr~~l 309 (366)
.+.|+|+|.+.+ +.+..+++..++ ++||++.=|-.+ -+.+..|..+|||++++..|+.
T Consensus 23 ~~~gv~gi~~~g-------------~~i~~~~~~~~~~~~~v~~~v~~~~~~~~~~~~~~~a~~a~~~Gad~i~v~~~~~ 89 (201)
T cd00945 23 IEYGFAAVCVNP-------------GYVRLAADALAGSDVPVIVVVGFPTGLTTTEVKVAEVEEAIDLGADEIDVVINIG 89 (201)
T ss_pred HHhCCcEEEECH-------------HHHHHHHHHhCCCCCeEEEEecCCCCCCcHHHHHHHHHHHHHcCCCEEEEeccHH
Confidence 567999998754 556666677766 789776433333 3445567779999999988876
Q ss_pred HHhhhcCHHHHHHHHHHHHH
Q 017781 310 YSLAAEGEKGVRRVLEMLRE 329 (366)
Q Consensus 310 ~~l~~~G~~gv~~~~~~l~~ 329 (366)
+... ..++++.+.+..+.+
T Consensus 90 ~~~~-~~~~~~~~~~~~i~~ 108 (201)
T cd00945 90 SLKE-GDWEEVLEEIAAVVE 108 (201)
T ss_pred HHhC-CCHHHHHHHHHHHHH
Confidence 5421 013444444444433
|
The class I aldolases use an active-site lysine which stablilzes a reaction intermediates via Schiff base formation, and have TIM beta/alpha barrel fold. The members of this family include 2-keto-3-deoxy-6-phosphogluconate (KDPG) and 2-keto-4-hydroxyglutarate (KHG) aldolases, transaldolase, dihydrodipicolinate synthase sub-family, Type I 3-dehydroquinate dehydratase, DeoC and DhnA proteins, and metal-independent fructose-1,6-bisphosphate aldolase. Although structurally similar, the class II aldolases use a different mechanism and are believed to have an independent evolutionary origin. |
| >COG0042 tRNA-dihydrouridine synthase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=91.37 E-value=1.3 Score=43.33 Aligned_cols=39 Identities=26% Similarity=0.619 Sum_probs=32.7
Q ss_pred CCCHHHHHHHHHhcC-CCEEEEe-ccCHHH-----HHcCCcEEEEc
Q 017781 211 SLSWKDVKWLQTITK-LPILVKG-VLTAED-----VQAGAAGIIVS 249 (366)
Q Consensus 211 ~~~~~~i~~lr~~~~-~pv~vK~-v~~~~d-----~~aGad~I~vs 249 (366)
+..|+.|+++|+..+ +||+.=| |.+.++ ...|+|+|.+.
T Consensus 183 ~ad~~~I~~vk~~~~~ipvi~NGdI~s~~~a~~~l~~tg~DgVMig 228 (323)
T COG0042 183 PADWDYIKELKEAVPSIPVIANGDIKSLEDAKEMLEYTGADGVMIG 228 (323)
T ss_pred ccCHHHHHHHHHhCCCCeEEeCCCcCCHHHHHHHHHhhCCCEEEEc
Confidence 368999999999998 9998886 478887 67889999773
|
|
| >PLN02411 12-oxophytodienoate reductase | Back alignment and domain information |
|---|
Probab=91.34 E-value=6.9 Score=39.27 Aligned_cols=85 Identities=16% Similarity=0.128 Sum_probs=45.3
Q ss_pred ceeEcCcccCCceEecccccccccCChh-----hHHHHHHHHHcCCceecCCCCCCCHHHHhccCCCceEEEeeecCCHH
Q 017781 62 NTTVLGFKISMPIMIAPTAMQKMAHPEG-----EYATARAASAAGTIMTLSSWSTSSVEEVASTGPGIRFFQLYVYKDRN 136 (366)
Q Consensus 62 st~l~g~~l~~Pi~iApm~~~~l~~~~~-----e~~la~aa~~~G~~~~vs~~~~~~~e~i~~~~~~~~~~Qly~~~d~~ 136 (366)
..+|.+.++++-|++|||+... . .++ ..+.-+.-++-| ++++.+....+.+. ...+ ....+|-...-+
T Consensus 15 P~~ig~~~lkNRiv~aPm~~~~-~-~dG~~t~~~~~yy~~rA~gG-GLIIte~~~V~~~g--~~~~--~~~gi~~d~~i~ 87 (391)
T PLN02411 15 PYKMGRFDLSHRVVLAPMTRCR-A-LNGIPNAALAEYYAQRSTPG-GFLISEGTLISPTA--PGFP--HVPGIYSDEQVE 87 (391)
T ss_pred CeeECCEEEcccCEECCcCcCc-C-CCCCCCHHHHHHHHHHHcCC-CEEEeCceEECccc--CcCC--CCCccCCHHHHH
Confidence 3578889999999999996432 2 222 123333333345 66665543322111 1111 112233222234
Q ss_pred HHHHHHHHHHHcCCCEE
Q 017781 137 VVAQLVRRAERAGFKAI 153 (366)
Q Consensus 137 ~~~~~l~ra~~~G~~ai 153 (366)
..+++.+.+++.|++.+
T Consensus 88 ~~~~l~~avH~~G~~i~ 104 (391)
T PLN02411 88 AWKKVVDAVHAKGSIIF 104 (391)
T ss_pred HHHHHHHHHHhcCCEEE
Confidence 56777788888898764
|
|
| >PF04309 G3P_antiterm: Glycerol-3-phosphate responsive antiterminator; InterPro: IPR006699 Glycerol enters bacterial cells via facilitated diffusion, an energy-independent transport process catalysed by the glycerol transport facilitator GlpF, an integral membrane protein of the aquaporin family | Back alignment and domain information |
|---|
Probab=91.31 E-value=0.14 Score=45.46 Aligned_cols=141 Identities=19% Similarity=0.231 Sum_probs=79.1
Q ss_pred ceEEEeeecCCHHHHHHHHHHHHHcCCCEEEEecCCCCCcchhHHHhhhcCCCCccccccccccccCCCccccchhhHHH
Q 017781 124 IRFFQLYVYKDRNVVAQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLTLKNFQGLDLGKMDEANDSGLAAY 203 (366)
Q Consensus 124 ~~~~Qly~~~d~~~~~~~l~ra~~~G~~ai~vtvd~p~~g~r~~d~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~ 203 (366)
...|=++ .|-....+++++++++|- -+.||+|. ..|+.- ....-+|
T Consensus 21 ~~vfLl~--g~I~~l~~~v~~~~~~gK-~vfVHiDl----------i~Gl~~---------------------D~~~i~~ 66 (175)
T PF04309_consen 21 EVVFLLT--GDIGNLKDIVKRLKAAGK-KVFVHIDL----------IEGLSR---------------------DEAGIEY 66 (175)
T ss_dssp SEEEE-S--EECCCHHHHHHHHHHTT--EEEEECCG----------EETB-S---------------------SHHHHHH
T ss_pred CEEEEEc--CcHHHHHHHHHHHHHcCC-EEEEEehh----------cCCCCC---------------------CHHHHHH
Confidence 3455454 344556788889998884 45678873 222210 0112233
Q ss_pred hhhcc--CCCC--CHHHHHHHHHhcCCCEEEEecc----CHHH-----HHcCCcEEEEcCCCccCCCCCcchHHHHHHHH
Q 017781 204 VAGQI--DRSL--SWKDVKWLQTITKLPILVKGVL----TAED-----VQAGAAGIIVSNHGARQLDYVPATIMALEEVV 270 (366)
Q Consensus 204 ~~~~~--d~~~--~~~~i~~lr~~~~~pv~vK~v~----~~~d-----~~aGad~I~vs~~gg~~~~~~~~~~~~l~~i~ 270 (366)
+.... |.-. -...++..|+. ++.-+-+... +.+. .+..+|+|-+-- + -....+.+++
T Consensus 67 L~~~~~~dGIISTk~~~i~~Ak~~-gl~tIqRiFliDS~al~~~~~~i~~~~PD~vEilP-------g--~~p~vi~~i~ 136 (175)
T PF04309_consen 67 LKEYGKPDGIISTKSNLIKRAKKL-GLLTIQRIFLIDSSALETGIKQIEQSKPDAVEILP-------G--VMPKVIKKIR 136 (175)
T ss_dssp HHHTT--SEEEESSHHHHHHHHHT-T-EEEEEEE-SSHHHHHHHHHHHHHHT-SEEEEES-------C--CHHHHHCCCC
T ss_pred HHHcCCCcEEEeCCHHHHHHHHHc-CCEEEEEeeeecHHHHHHHHHHHhhcCCCEEEEch-------H--HHHHHHHHHH
Confidence 33322 2222 23457777764 6666666432 2222 788899997622 1 1123444444
Q ss_pred HHcCCCceEEEecCCCCHHHHHHHHHhCcCEEEecHHHHH
Q 017781 271 KATQGRIPVFLDGGVRRGTDVFKALALGASGIFIGRPVVY 310 (366)
Q Consensus 271 ~~~~~~i~vi~~GGI~~~~dv~kalalGAd~V~igr~~l~ 310 (366)
+.+ ++|||+.|=|++.+|+.++|..||++|....+-||
T Consensus 137 ~~~--~~PiIAGGLI~~~e~v~~al~aGa~aVSTS~~~LW 174 (175)
T PF04309_consen 137 EET--NIPIIAGGLIRTKEDVEEALKAGADAVSTSNKELW 174 (175)
T ss_dssp CCC--SS-EEEESS--SHHHHHHHCCTTCEEEEE--HHHC
T ss_pred Hhc--CCCEEeecccCCHHHHHHHHHcCCEEEEcCChHhc
Confidence 444 69999999999999999999999999999887665
|
Intracellular glycerol is usually converted to glycerol-3-P in an ATP-requiring phosphorylation reaction catalysed by glycerol kinase (GlpK). Glycerol-3-P, the inducer of the glpFK operon, is not a substrate for GlpF and hence remains entrapped in the cell where it is metabolized further. In some bacterial species, for example Bacillus firmus, glycerol-3-P activates the antiterminator GlpP []. In B. subtilis, glpF and glpK are organised in an operon followed by the glycerol-3-P dehydrogenase-encoding glpD gene and preceded by glpP coding for an antiterminator regulating the expression of glpFK, glpD and glpTQ. Their induction requires the inducer glycerol-3-P, which activates the antiterminator GlpP by allowing it to bind to the leader region of glpD and presumably also of glpFK and glpTQ mRNAs.; GO: 0006355 regulation of transcription, DNA-dependent, 0009607 response to biotic stimulus; PDB: 1VKF_A 3KTS_G. |
| >COG0434 SgcQ Predicted TIM-barrel enzyme [General function prediction only] | Back alignment and domain information |
|---|
Probab=91.28 E-value=0.47 Score=44.01 Aligned_cols=63 Identities=22% Similarity=0.382 Sum_probs=52.0
Q ss_pred HHcCCcEEEEcCCCccCCCCCcchHHHHHHHHHHcCCCceEEEecCCCCHHHHHHHHHhCcCEEEecHHHH
Q 017781 239 VQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFIGRPVV 309 (366)
Q Consensus 239 ~~aGad~I~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~i~vi~~GGI~~~~dv~kalalGAd~V~igr~~l 309 (366)
...++|+|+++++. .++++..+.|..+.+.. ++||++.+|+ +.+.+.+.|.. ||++.+|+.+=
T Consensus 174 er~~aDaVI~tG~~----TG~~~d~~el~~a~~~~--~~pvlvGSGv-~~eN~~~~l~~-adG~IvgT~lK 236 (263)
T COG0434 174 ERGLADAVIVTGSR----TGSPPDLEELKLAKEAV--DTPVLVGSGV-NPENIEELLKI-ADGVIVGTSLK 236 (263)
T ss_pred HccCCCEEEEeccc----CCCCCCHHHHHHHHhcc--CCCEEEecCC-CHHHHHHHHHH-cCceEEEEEEc
Confidence 66789999999853 24678889998888887 6999999998 67788888877 99999998763
|
|
| >PF00290 Trp_syntA: Tryptophan synthase alpha chain; InterPro: IPR002028 Tryptophan synthase (4 | Back alignment and domain information |
|---|
Probab=91.18 E-value=0.92 Score=42.94 Aligned_cols=36 Identities=39% Similarity=0.634 Sum_probs=29.0
Q ss_pred HHHHHHHHhcCCCEEEE-eccCHHH---HHcCCcEEEEcC
Q 017781 215 KDVKWLQTITKLPILVK-GVLTAED---VQAGAAGIIVSN 250 (366)
Q Consensus 215 ~~i~~lr~~~~~pv~vK-~v~~~~d---~~aGad~I~vs~ 250 (366)
+.++.+|+.+++||.+. |+.++++ ...|+|+++|..
T Consensus 188 ~~i~~ik~~~~~Pv~vGFGI~~~e~~~~~~~~aDGvIVGS 227 (259)
T PF00290_consen 188 EFIKRIKKHTDLPVAVGFGISTPEQAKKLAAGADGVIVGS 227 (259)
T ss_dssp HHHHHHHHTTSS-EEEESSS-SHHHHHHHHTTSSEEEESH
T ss_pred HHHHHHHhhcCcceEEecCCCCHHHHHHHHccCCEEEECH
Confidence 56999999999999999 6778887 569999999854
|
2.1.20 from EC) catalyzes the last step in the biosynthesis of tryptophan [, ]: |
| >PF01116 F_bP_aldolase: Fructose-bisphosphate aldolase class-II; InterPro: IPR000771 Fructose-bisphosphate aldolase [, ] is a glycolytic enzyme that catalyses the reversible aldol cleavage or condensation of fructose-1,6-bisphosphate into dihydroxyacetone-phosphate and glyceraldehyde 3-phosphate | Back alignment and domain information |
|---|
Probab=90.91 E-value=5 Score=38.55 Aligned_cols=101 Identities=25% Similarity=0.329 Sum_probs=68.7
Q ss_pred HHcCCcEEEEcC---CCccCCCCCcc--hHHHHHHHHHHcCCCceEEEecCCCCHH-HHHHHHHhCcCEEEecHHHHHHh
Q 017781 239 VQAGAAGIIVSN---HGARQLDYVPA--TIMALEEVVKATQGRIPVFLDGGVRRGT-DVFKALALGASGIFIGRPVVYSL 312 (366)
Q Consensus 239 ~~aGad~I~vs~---~gg~~~~~~~~--~~~~l~~i~~~~~~~i~vi~~GGI~~~~-dv~kalalGAd~V~igr~~l~~l 312 (366)
.+.|+|.+-|+- ||..... ..| .++.|.+|.+.++ ++|+..=||=..+. ++.|++.+|..-|-+++-+..+.
T Consensus 165 ~~TgvD~LAvaiGt~HG~y~~~-~~p~Ld~~~L~~I~~~~~-~iPLVlHGgSG~~~e~~~~ai~~Gi~KiNi~T~~~~a~ 242 (287)
T PF01116_consen 165 EETGVDALAVAIGTAHGMYKGG-KKPKLDFDRLKEIREAVP-DIPLVLHGGSGLPDEQIRKAIKNGISKINIGTELRRAF 242 (287)
T ss_dssp HHHTTSEEEE-SSSBSSSBSSS-SSTC--HHHHHHHHHHHH-TSEEEESSCTTS-HHHHHHHHHTTEEEEEESHHHHHHH
T ss_pred HHhCCCEEEEecCccccccCCC-CCcccCHHHHHHHHHhcC-CCCEEEECCCCCCHHHHHHHHHcCceEEEEehHHHHHH
Confidence 566889998874 4532211 133 5788999998874 69999999877666 78899999999999999876542
Q ss_pred hh-------cC------HHHHHHHHHHHHHHHHHHHHHcCCC
Q 017781 313 AA-------EG------EKGVRRVLEMLREEFELAMALSGCR 341 (366)
Q Consensus 313 ~~-------~G------~~gv~~~~~~l~~el~~~m~~~G~~ 341 (366)
.. .. ..-.....+.+++.++..|..+|..
T Consensus 243 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~gs~ 284 (287)
T PF01116_consen 243 TDALREYLAENPDKYDPRKLMKAAKEAMKEVVKEKIRLFGSA 284 (287)
T ss_dssp HHHHHHHHHHSTTEHSHHHHHHHHHHHHHHHHHHHHHHHTTT
T ss_pred HHHHHHHHHhCcccCCHHHHHHHHHHHHHHHHHHHHHHhCCC
Confidence 11 00 1223444566777788888888864
|
There are two classes of fructose-bisphosphate aldolases with different catalytic mechanisms. Class-II aldolases [], mainly found in prokaryotes and fungi, are homodimeric enzymes, which require a divalent metal ion, generally zinc, for their activity. This family also includes the Escherichia coli galactitol operon protein, gatY, which catalyses the transformation of tagatose 1,6-bisphosphate into glycerone phosphate and D-glyceraldehyde 3-phosphate; and E. coli N-acetyl galactosamine operon protein, agaY, which catalyses the same reaction. There are two histidine residues in the first half of the sequence of these enzymes that have been shown to be involved in binding a zinc ion [].; GO: 0008270 zinc ion binding, 0016832 aldehyde-lyase activity, 0005975 carbohydrate metabolic process; PDB: 3Q94_A 1RVG_B 1RV8_C 3C4U_A 3C56_B 3C52_A 2FJK_A 3N9R_P 3N9S_A 1GVF_B .... |
| >PRK12457 2-dehydro-3-deoxyphosphooctonate aldolase; Provisional | Back alignment and domain information |
|---|
Probab=90.85 E-value=1.9 Score=41.01 Aligned_cols=91 Identities=24% Similarity=0.451 Sum_probs=60.4
Q ss_pred HHHHHHHHHhcCCCEEEEec--cCHHH--------HHcCCcEEEEcCCCccC-CCCCcchHHHHHHHHHHcCCCceEEEe
Q 017781 214 WKDVKWLQTITKLPILVKGV--LTAED--------VQAGAAGIIVSNHGARQ-LDYVPATIMALEEVVKATQGRIPVFLD 282 (366)
Q Consensus 214 ~~~i~~lr~~~~~pv~vK~v--~~~~d--------~~aGad~I~vs~~gg~~-~~~~~~~~~~l~~i~~~~~~~i~vi~~ 282 (366)
.+.++.+.+ ++.||.+|-. .++++ .+.|-.-|++.-+|-+- ...-...+..++.+++.. ..+|||+|
T Consensus 120 tdLL~a~~~-t~kpV~lKrGqf~s~~e~~~aae~i~~~Gn~~vilcERG~~fgy~~~~~D~~~ip~mk~~~-t~lPVi~D 197 (281)
T PRK12457 120 TDLVVAIAK-TGKPVNIKKPQFMSPTQMKHVVSKCREAGNDRVILCERGSSFGYDNLVVDMLGFRQMKRTT-GDLPVIFD 197 (281)
T ss_pred HHHHHHHhc-cCCeEEecCCCcCCHHHHHHHHHHHHHcCCCeEEEEeCCCCCCCCCcccchHHHHHHHhhC-CCCCEEEe
Confidence 455666555 5899999966 67776 77898989887766441 111233556677666642 25899987
Q ss_pred ---------------cCCCCH--HHHHHHHHhCcCEEEecH
Q 017781 283 ---------------GGVRRG--TDVFKALALGASGIFIGR 306 (366)
Q Consensus 283 ---------------GGI~~~--~dv~kalalGAd~V~igr 306 (366)
||.|.- .-+..|++.|||++++-.
T Consensus 198 pSHsvq~p~~~g~~s~G~re~v~~larAAvA~GaDGl~iEv 238 (281)
T PRK12457 198 VTHSLQCRDPLGAASGGRRRQVLDLARAGMAVGLAGLFLEA 238 (281)
T ss_pred CCccccCCCCCCCCCCCCHHHHHHHHHHHHHhCCCEEEEEe
Confidence 444432 223467789999999985
|
|
| >PRK05286 dihydroorotate dehydrogenase 2; Reviewed | Back alignment and domain information |
|---|
Probab=90.70 E-value=1.1 Score=44.13 Aligned_cols=100 Identities=19% Similarity=0.147 Sum_probs=60.8
Q ss_pred CceEEEeeecCCHHHHHHHHHHHHHcCCCEEEEecCCCCCcchhHHHhhhcCCCCccccccccccccCCCccccchhhHH
Q 017781 123 GIRFFQLYVYKDRNVVAQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLTLKNFQGLDLGKMDEANDSGLAA 202 (366)
Q Consensus 123 ~~~~~Qly~~~d~~~~~~~l~ra~~~G~~ai~vtvd~p~~g~r~~d~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~ 202 (366)
.|.++.|-+..+.+.+.++++.++++|++++.++-..+.. . ++ .-+ ...+ . ....++ .
T Consensus 212 ~PV~vKlsp~~~~~~~~~ia~~l~~~Gadgi~~~nt~~~~---~-~~----~~~---~~~~--------~-~gg~SG--~ 269 (344)
T PRK05286 212 VPLLVKIAPDLSDEELDDIADLALEHGIDGVIATNTTLSR---D-GL----KGL---PNAD--------E-AGGLSG--R 269 (344)
T ss_pred CceEEEeCCCCCHHHHHHHHHHHHHhCCcEEEEeCCcccc---c-cc----ccc---ccCC--------C-CCCccc--H
Confidence 4788888765555567888899999999999886433210 0 00 000 0000 0 000000 0
Q ss_pred HhhhccCCCCCHHHHHHHHHhc--CCCEE-EEeccCHHH----HHcCCcEEEEc
Q 017781 203 YVAGQIDRSLSWKDVKWLQTIT--KLPIL-VKGVLTAED----VQAGAAGIIVS 249 (366)
Q Consensus 203 ~~~~~~d~~~~~~~i~~lr~~~--~~pv~-vK~v~~~~d----~~aGad~I~vs 249 (366)
......|+.++.+++.. ++||+ +.|+.+.+| ..+|||.|.+.
T Consensus 270 -----~~~~~~l~~v~~l~~~~~~~ipIig~GGI~s~eda~e~l~aGAd~V~v~ 318 (344)
T PRK05286 270 -----PLFERSTEVIRRLYKELGGRLPIIGVGGIDSAEDAYEKIRAGASLVQIY 318 (344)
T ss_pred -----HHHHHHHHHHHHHHHHhCCCCCEEEECCCCCHHHHHHHHHcCCCHHHHH
Confidence 01124688899999988 78987 446788888 77999998653
|
|
| >cd02809 alpha_hydroxyacid_oxid_FMN Family of homologous FMN-dependent alpha-hydroxyacid oxidizing enzymes | Back alignment and domain information |
|---|
Probab=90.44 E-value=3 Score=40.14 Aligned_cols=84 Identities=18% Similarity=0.184 Sum_probs=57.5
Q ss_pred HHHHHHhcCCCEEEEecc--CHHH--------HHcCCcEEEEcCCCccCCCCCcchHHHHHHHHHHcCCCceEEEecCCC
Q 017781 217 VKWLQTITKLPILVKGVL--TAED--------VQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVR 286 (366)
Q Consensus 217 i~~lr~~~~~pv~vK~v~--~~~d--------~~aGad~I~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~i~vi~~GGI~ 286 (366)
.+.+++..+.|+++.... +++. .+.|+|+|.++-.- ...+....++.+.++++.+ ++||++- ++.
T Consensus 107 ~~~i~~~~~~~~~~ql~~~~~~~~~~~~i~~~~~~g~~~i~l~~~~--p~~~~~~~~~~i~~l~~~~--~~pvivK-~v~ 181 (299)
T cd02809 107 LEEVAAAAPGPRWFQLYVPRDREITEDLLRRAEAAGYKALVLTVDT--PVLGRRLTWDDLAWLRSQW--KGPLILK-GIL 181 (299)
T ss_pred HHHHHHhcCCCeEEEEeecCCHHHHHHHHHHHHHcCCCEEEEecCC--CCCCCCCCHHHHHHHHHhc--CCCEEEe-ecC
Confidence 344444445688877653 3332 66899999875311 0001113567888888877 6898885 589
Q ss_pred CHHHHHHHHHhCcCEEEec
Q 017781 287 RGTDVFKALALGASGIFIG 305 (366)
Q Consensus 287 ~~~dv~kalalGAd~V~ig 305 (366)
+.+++.++..+|||+|.+.
T Consensus 182 s~~~a~~a~~~G~d~I~v~ 200 (299)
T cd02809 182 TPEDALRAVDAGADGIVVS 200 (299)
T ss_pred CHHHHHHHHHCCCCEEEEc
Confidence 9999999999999999884
|
This family occurs in both prokaryotes and eukaryotes. Members of this family include flavocytochrome b2 (FCB2), glycolate oxidase (GOX), lactate monooxygenase (LMO), mandelate dehydrogenase (MDH), and long chain hydroxyacid oxidase (LCHAO). In green plants, glycolate oxidase is one of the key enzymes in photorespiration where it oxidizes glycolate to glyoxylate. LMO catalyzes the oxidation of L-lactate to acetate and carbon dioxide. MDH oxidizes (S)-mandelate to phenylglyoxalate. It is an enzyme in the mandelate pathway that occurs in several strains of Pseudomonas which converts (R)-mandelate to benzoate. |
| >PRK11840 bifunctional sulfur carrier protein/thiazole synthase protein; Provisional | Back alignment and domain information |
|---|
Probab=90.14 E-value=1.7 Score=42.36 Aligned_cols=102 Identities=24% Similarity=0.358 Sum_probs=66.2
Q ss_pred CceEEEeeecCCHH----HHHHHHHHHHHc---CCCEEEEecCCCCCcchhHHHhhhcCCCCccccccccccccCCCccc
Q 017781 123 GIRFFQLYVYKDRN----VVAQLVRRAERA---GFKAIALTVDTPRLGRREADIKNRFTLPPFLTLKNFQGLDLGKMDEA 195 (366)
Q Consensus 123 ~~~~~Qly~~~d~~----~~~~~l~ra~~~---G~~ai~vtvd~p~~g~r~~d~~~~~~~p~~~~~~~~~~~~~~~~~~~ 195 (366)
+.-|+.|-+-.|+. ...+.+++++.. |+..+.+..|.|...+|..++.-..-+|
T Consensus 164 ~~~~iKlEvi~e~~~llpd~~~~v~aa~~L~~~Gf~v~~yc~~d~~~a~~l~~~g~~avmP------------------- 224 (326)
T PRK11840 164 GWDLVKLEVLGDAKTLYPDMVETLKATEILVKEGFQVMVYCSDDPIAAKRLEDAGAVAVMP------------------- 224 (326)
T ss_pred CCCeEEEEEcCCCCCcccCHHHHHHHHHHHHHCCCEEEEEeCCCHHHHHHHHhcCCEEEee-------------------
Confidence 45688875533322 245667777777 9999888889888877776652100011
Q ss_pred cchhhHHHhhhccCCCCCHHHHHHHHHhcCCCEEEE-eccCHHH----HHcCCcEEEE
Q 017781 196 NDSGLAAYVAGQIDRSLSWKDVKWLQTITKLPILVK-GVLTAED----VQAGAAGIIV 248 (366)
Q Consensus 196 ~~~~~~~~~~~~~d~~~~~~~i~~lr~~~~~pv~vK-~v~~~~d----~~aGad~I~v 248 (366)
..+.+.+ +.+-.+.+.|+.+++..++||++- |+.+++| .+.|+|++-+
T Consensus 225 ----l~~pIGs-g~gv~~p~~i~~~~e~~~vpVivdAGIg~~sda~~AmelGadgVL~ 277 (326)
T PRK11840 225 ----LGAPIGS-GLGIQNPYTIRLIVEGATVPVLVDAGVGTASDAAVAMELGCDGVLM 277 (326)
T ss_pred ----ccccccC-CCCCCCHHHHHHHHHcCCCcEEEeCCCCCHHHHHHHHHcCCCEEEE
Confidence 0000110 111125678888888889999998 5678887 9999999965
|
|
| >cd00516 PRTase_typeII Phosphoribosyltransferase (PRTase) type II; This family contains two enzymes that play an important role in NAD production by either allowing quinolinic acid (QA) , quinolinate phosphoribosyl transferase (QAPRTase), or nicotinic acid (NA), nicotinate phosphoribosyltransferase (NAPRTase), to be used in the synthesis of NAD | Back alignment and domain information |
|---|
Probab=90.05 E-value=2.9 Score=39.74 Aligned_cols=91 Identities=19% Similarity=0.202 Sum_probs=56.3
Q ss_pred HHHHHHHHhcCCCEEEEe---ccCHHH----HHcC-CcEEEEcCCCccCCCCCcchHHHHHHHHHHc----CCCceEEEe
Q 017781 215 KDVKWLQTITKLPILVKG---VLTAED----VQAG-AAGIIVSNHGARQLDYVPATIMALEEVVKAT----QGRIPVFLD 282 (366)
Q Consensus 215 ~~i~~lr~~~~~pv~vK~---v~~~~d----~~aG-ad~I~vs~~gg~~~~~~~~~~~~l~~i~~~~----~~~i~vi~~ 282 (366)
+.++.+++..+.|...|. +.+.++ .++| +|+|-+.+.+-.. ..+....+ +..+.+ ..++.++++
T Consensus 170 ~a~~~~~~~~~~~~~~~idve~~~~~~~~~~~~~~~~d~irlDs~~~~~---~~~~~~~~-~~~~~~~~~~~~~~~i~~S 245 (281)
T cd00516 170 AAVKALRRWLPELFIALIDVEVDTLEEALEAAKAGGADGIRLDSGSPEE---LDPAVLIL-KARAHLDGKGLPRVKIEAS 245 (281)
T ss_pred HHHHHHHHhCCCCceEEEEEEeCCHHHHHHHHhcCCCCEEEeCCCChHH---HHHHHHHH-HHHHhhhhcCCCceEEEEe
Confidence 457777776543344442 234444 8888 9999887743211 11111112 111111 136789999
Q ss_pred cCCCCHHHHHHHHHhCcCEEEecHHHHH
Q 017781 283 GGVRRGTDVFKALALGASGIFIGRPVVY 310 (366)
Q Consensus 283 GGI~~~~dv~kalalGAd~V~igr~~l~ 310 (366)
|||. .+.+.....+|.|.+++|+.+..
T Consensus 246 ggi~-~~~i~~~~~~gvd~~gvG~~~~~ 272 (281)
T cd00516 246 GGLD-EENIRAYAETGVDVFGVGTLLHS 272 (281)
T ss_pred CCCC-HHHHHHHHHcCCCEEEeCccccc
Confidence 9997 77777777799999999987643
|
QAPRTase catalyses the reaction of quinolinic acid (QA) with 5-phosphoribosyl-1-pyrophosphate (PRPP) in the presence of Mg2+ to produce nicotinic acid mononucleotide (NAMN), pyrophosphate and carbon dioxide, an important step in the de novo synthesis of NAD. NAPRTase catalyses a similar reaction leading to NAMN and pyrophosphate, using nicotinic acid an PPRP as substrates, used in the NAD salvage pathway. |
| >PLN02858 fructose-bisphosphate aldolase | Back alignment and domain information |
|---|
Probab=89.90 E-value=41 Score=39.48 Aligned_cols=103 Identities=13% Similarity=0.113 Sum_probs=69.3
Q ss_pred HHcCCcEEEEcC---CCccCCCCCcchHHHHHHHHHHcC-CCceEEEecCCCC-HHHHHHHHHhCcCEEEecHHHHHHhh
Q 017781 239 VQAGAAGIIVSN---HGARQLDYVPATIMALEEVVKATQ-GRIPVFLDGGVRR-GTDVFKALALGASGIFIGRPVVYSLA 313 (366)
Q Consensus 239 ~~aGad~I~vs~---~gg~~~~~~~~~~~~l~~i~~~~~-~~i~vi~~GGI~~-~~dv~kalalGAd~V~igr~~l~~l~ 313 (366)
.+.|+|.+-|+- ||-+......-.++.|.+|++.+. .++|+..=||=.. -+++.||+.+|..-|-|++-+..+..
T Consensus 1260 ~~TgvD~LAvaiGt~HG~Y~~~~p~l~~~~l~~i~~~~~~~~vpLVlHGgSG~~~~~~~~ai~~Gi~KiNi~T~~~~a~~ 1339 (1378)
T PLN02858 1260 DETGIDALAVCIGNVHGKYPASGPNLRLDLLKELRALSSKKGVLLVLHGASGLPESLIKECIENGVRKFNVNTEVRTAYM 1339 (1378)
T ss_pred HhcCCcEEeeecccccccCCCCCCccCHHHHHHHHHHhcCCCCcEEEeCCCCCCHHHHHHHHHcCCeEEEeCHHHHHHHH
Confidence 678999999874 553321111236789999999883 2589888774333 46788999999999999997755421
Q ss_pred ----hcC----HHHHHHHHHHHHHHHHHHHHHcCCC
Q 017781 314 ----AEG----EKGVRRVLEMLREEFELAMALSGCR 341 (366)
Q Consensus 314 ----~~G----~~gv~~~~~~l~~el~~~m~~~G~~ 341 (366)
..+ ..-.....+.+++-.+..|+.+|..
T Consensus 1340 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~gs~ 1375 (1378)
T PLN02858 1340 EALSSPKKTDLIDVMSAAKEAMKAVVAEKLRLFGSA 1375 (1378)
T ss_pred HHHhCcccCCHHHHHHHHHHHHHHHHHHHHHHhCCC
Confidence 111 1223445567778888888888854
|
|
| >TIGR02317 prpB methylisocitrate lyase | Back alignment and domain information |
|---|
Probab=89.70 E-value=14 Score=35.49 Aligned_cols=61 Identities=16% Similarity=0.183 Sum_probs=42.1
Q ss_pred HHcCCcEEEEcCCCccCCCCCcchHHHHHHHHHHcCCCceEE---EecCCCCH-HHHHHHHHhCcCEEEecHHHHHH
Q 017781 239 VQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVF---LDGGVRRG-TDVFKALALGASGIFIGRPVVYS 311 (366)
Q Consensus 239 ~~aGad~I~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~i~vi---~~GGI~~~-~dv~kalalGAd~V~igr~~l~~ 311 (366)
.++|||+|.+-+ +.+.+.+.++.+.+ +.|++ ..+|- ++ -++...-++|.+.|..|...+++
T Consensus 171 ~~AGAD~vfi~g---------~~~~e~i~~~~~~i--~~Pl~~n~~~~~~-~p~~s~~eL~~lGv~~v~~~~~~~~a 235 (285)
T TIGR02317 171 VEAGADMIFPEA---------LTSLEEFRQFAKAV--KVPLLANMTEFGK-TPLFTADELREAGYKMVIYPVTAFRA 235 (285)
T ss_pred HHcCCCEEEeCC---------CCCHHHHHHHHHhc--CCCEEEEeccCCC-CCCCCHHHHHHcCCcEEEEchHHHHH
Confidence 999999998732 34566777888777 46763 33442 22 24555567899999999877665
|
Members of this family are methylisocitrate lyase, also called (2S,3R)-3-hydroxybutane-1,2,3-tricarboxylate pyruvate-lyase. This enzyme acts in propionate metabolism. It cleaves a carbon-carbon bond to convert 2-methylisocitrate to pyruvate plus succinate. Some members of this family have been annotated, incorrectly it seems, as the related protein carboxyphosphoenolpyruvate phosphomutase, which is involved in synthesizing the antibiotic bialaphos in Streptomyces hygroscopicus. |
| >PRK11320 prpB 2-methylisocitrate lyase; Provisional | Back alignment and domain information |
|---|
Probab=89.67 E-value=14 Score=35.65 Aligned_cols=61 Identities=15% Similarity=0.193 Sum_probs=41.4
Q ss_pred HHcCCcEEEEcCCCccCCCCCcchHHHHHHHHHHcCCCceEE---EecCCCCH-HHHHHHHHhCcCEEEecHHHHHH
Q 017781 239 VQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVF---LDGGVRRG-TDVFKALALGASGIFIGRPVVYS 311 (366)
Q Consensus 239 ~~aGad~I~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~i~vi---~~GGI~~~-~dv~kalalGAd~V~igr~~l~~ 311 (366)
.++|||+|.+.+ +.+.+.+.++.+.+ ++|++ ..+|- ++ .++...-++|.+.|..|...+++
T Consensus 176 ~eAGAD~ifi~~---------~~~~~~i~~~~~~~--~~Pl~~n~~~~~~-~p~~s~~~L~~lGv~~v~~~~~~~~a 240 (292)
T PRK11320 176 VEAGADMIFPEA---------MTELEMYRRFADAV--KVPILANITEFGA-TPLFTTEELASAGVAMVLYPLSAFRA 240 (292)
T ss_pred HHcCCCEEEecC---------CCCHHHHHHHHHhc--CCCEEEEeccCCC-CCCCCHHHHHHcCCcEEEEChHHHHH
Confidence 999999998733 34577777787777 56763 33442 22 23444556899999999877654
|
|
| >CHL00162 thiG thiamin biosynthesis protein G; Validated | Back alignment and domain information |
|---|
Probab=89.65 E-value=0.96 Score=42.44 Aligned_cols=37 Identities=19% Similarity=0.536 Sum_probs=31.5
Q ss_pred CCHHHHHHHHHhcCCCEEEE-eccCHHH----HHcCCcEEEE
Q 017781 212 LSWKDVKWLQTITKLPILVK-GVLTAED----VQAGAAGIIV 248 (366)
Q Consensus 212 ~~~~~i~~lr~~~~~pv~vK-~v~~~~d----~~aGad~I~v 248 (366)
.+...++.+++..++||++- |+.+++| .+.|+|++-+
T Consensus 176 ~n~~~l~~i~e~~~vpVivdAGIgt~sDa~~AmElGaDgVL~ 217 (267)
T CHL00162 176 QNLLNLQIIIENAKIPVIIDAGIGTPSEASQAMELGASGVLL 217 (267)
T ss_pred CCHHHHHHHHHcCCCcEEEeCCcCCHHHHHHHHHcCCCEEee
Confidence 36678999999999999998 5678888 9999999965
|
|
| >TIGR03249 KdgD 5-dehydro-4-deoxyglucarate dehydratase | Back alignment and domain information |
|---|
Probab=89.59 E-value=20 Score=34.36 Aligned_cols=82 Identities=12% Similarity=0.072 Sum_probs=51.6
Q ss_pred CceEecccccccccCChhhHHHHHHHHHcCCceec--C---CCCCCCHHHHhc-------cCC--CceEEEeeecCCHHH
Q 017781 72 MPIMIAPTAMQKMAHPEGEYATARAASAAGTIMTL--S---SWSTSSVEEVAS-------TGP--GIRFFQLYVYKDRNV 137 (366)
Q Consensus 72 ~Pi~iApm~~~~l~~~~~e~~la~aa~~~G~~~~v--s---~~~~~~~e~i~~-------~~~--~~~~~Qly~~~d~~~ 137 (366)
.|.++.|+.-.+-...++-..+++-..+.|+-..+ + ++.+.+.||..+ ... .+.++++- .+.+.
T Consensus 10 ~~a~vTPf~~dg~iD~~~l~~li~~l~~~Gv~gi~v~GstGE~~~Lt~eEr~~v~~~~~~~~~g~~pvi~gv~--~~t~~ 87 (296)
T TIGR03249 10 LSFPVTPFDADGSFDEAAYRENIEWLLGYGLEALFAAGGTGEFFSLTPAEYEQVVEIAVSTAKGKVPVYTGVG--GNTSD 87 (296)
T ss_pred EEeeeCCcCCCCCcCHHHHHHHHHHHHhcCCCEEEECCCCcCcccCCHHHHHHHHHHHHHHhCCCCcEEEecC--ccHHH
Confidence 45667776433333344445777788888866543 2 344567665432 222 35677764 34666
Q ss_pred HHHHHHHHHHcCCCEEEE
Q 017781 138 VAQLVRRAERAGFKAIAL 155 (366)
Q Consensus 138 ~~~~l~ra~~~G~~ai~v 155 (366)
..++++.++++|++++++
T Consensus 88 ai~~a~~a~~~Gadav~~ 105 (296)
T TIGR03249 88 AIEIARLAEKAGADGYLL 105 (296)
T ss_pred HHHHHHHHHHhCCCEEEE
Confidence 777888899999999987
|
5-dehydro-4-deoxyglucarate dehydratase not only catalyzes the dehydration of the substrate (diol to ketone + water), but causes the decarboxylation of the intermediate product to yield 2-oxoglutarate semialdehyde (2,5-dioxopentanoate). The gene for the enzyme is usually observed in the vicinity of transporters and dehydratases handling D-galactarate and D-gluconate as well as aldehyde dehydrogenases which convert the product to alpha-ketoglutarate. |
| >cd00439 Transaldolase Transaldolase | Back alignment and domain information |
|---|
Probab=89.45 E-value=19 Score=33.90 Aligned_cols=94 Identities=12% Similarity=0.016 Sum_probs=61.4
Q ss_pred HHHHHHHHhcCCCEEEEeccCHHH----HHcCCcEEEEcC-----CCccCC-CC-----CcchHHHHHHHHHHc---CCC
Q 017781 215 KDVKWLQTITKLPILVKGVLTAED----VQAGAAGIIVSN-----HGARQL-DY-----VPATIMALEEVVKAT---QGR 276 (366)
Q Consensus 215 ~~i~~lr~~~~~pv~vK~v~~~~d----~~aGad~I~vs~-----~gg~~~-~~-----~~~~~~~l~~i~~~~---~~~ 276 (366)
+.++.|++. ++++-+=.+.+.+. .++|++.|...- ++..++ .. +.+.+..+.++.+.. +.+
T Consensus 130 ~A~~~L~~~-GI~vn~T~vfs~~Qa~~aa~Aga~~ispfvgRid~~~~~~~~~~~~d~~~~~gi~~~~~~~~~~~~~~~~ 208 (252)
T cd00439 130 PAIKDLIAA-GISVNVTLIFSIAQYEAVADAGTSVASPFVSRIDTLMDKMLEQIGLDLRGKAGVAQVTLAYKLYKQKFKK 208 (252)
T ss_pred HHHHHHHHC-CCceeeeeecCHHHHHHHHHcCCCEEEEeccHHHHHhhhhccccccccccCcHHHHHHHHHHHHHHhCCC
Confidence 345555543 89999999999887 999999886431 121111 00 114445555555433 235
Q ss_pred ceEEEecCCCCHHHHHHHHHhCcCEEEecHHHHHHh
Q 017781 277 IPVFLDGGVRRGTDVFKALALGASGIFIGRPVVYSL 312 (366)
Q Consensus 277 i~vi~~GGI~~~~dv~kalalGAd~V~igr~~l~~l 312 (366)
..|++.+ +|+..++.+++ |+|.|-+.-..+..+
T Consensus 209 tkiL~AS-~r~~~~v~~l~--G~d~vT~~p~v~~~l 241 (252)
T cd00439 209 QRVLWAS-FSDTLYVAPLI--GCDTVTTMPDQALEA 241 (252)
T ss_pred CeEEEEe-eCCHHHHHHhh--CCCeeecCHHHHHHH
Confidence 6676655 99999998766 999999998877765
|
Enzymes found in the non-oxidative branch of the pentose phosphate pathway, that catalyze the reversible transfer of a dihydroxyacetone group from fructose-6-phosphate to erythrose-4-phosphate yielding sedoheptulose-7-phosphate and glyceraldehyde-3-phosphate. They are members of the class I aldolases, who are characterized by using a Schiff-base mechanism for stabilization of the reaction intermediates. |
| >cd01571 NAPRTase_B Nicotinate phosphoribosyltransferase (NAPRTase), subgroup B | Back alignment and domain information |
|---|
Probab=89.30 E-value=2.4 Score=41.01 Aligned_cols=90 Identities=18% Similarity=0.259 Sum_probs=58.8
Q ss_pred HHHHHHHHhcC--CCEEEEeccCH----HH----HHc---CCcEEEEcCCCccCCCCCcchHHHHHHHHHHc---C-CCc
Q 017781 215 KDVKWLQTITK--LPILVKGVLTA----ED----VQA---GAAGIIVSNHGARQLDYVPATIMALEEVVKAT---Q-GRI 277 (366)
Q Consensus 215 ~~i~~lr~~~~--~pv~vK~v~~~----~d----~~a---Gad~I~vs~~gg~~~~~~~~~~~~l~~i~~~~---~-~~i 277 (366)
+.++.+++..+ .|+++= +-+. .+ .++ ++|+|-++|.+++. | -..+.+.++++++ + .++
T Consensus 172 ~A~~~~~~~~p~~~~i~ve-vdt~~~~v~eal~~~~~~~~~~d~I~lDn~~~~~---G-~~~~~~~~~~~~l~~~g~~~~ 246 (302)
T cd01571 172 EAWKAFDETYPEDVPRIAL-IDTFNDEKEEALKAAKALGDKLDGVRLDTPSSRR---G-VFRYLIREVRWALDIRGYKHV 246 (302)
T ss_pred HHHHHHHHHCCCcCCeEEE-EeecCcchHHHHHHHHHhCCCCcEEEECCCCCCC---C-CHHHHHHHHHHHHHhCCCCCe
Confidence 34777777664 454443 3232 23 333 59999999865311 1 1333444444443 2 468
Q ss_pred eEEEecCCCCHHHHHHHHHhCcCEEEecHHHHH
Q 017781 278 PVFLDGGVRRGTDVFKALALGASGIFIGRPVVY 310 (366)
Q Consensus 278 ~vi~~GGI~~~~dv~kalalGAd~V~igr~~l~ 310 (366)
.|+++||| +.+.+.+..+.|+|.+.+|+.+..
T Consensus 247 ~ieaSGgI-~~~~i~~~a~~gvD~isvGs~~~~ 278 (302)
T cd01571 247 KIFVSGGL-DEEDIKELEDVGVDAFGVGTAISK 278 (302)
T ss_pred EEEEeCCC-CHHHHHHHHHcCCCEEECCcccCC
Confidence 89999999 889999888899999999986643
|
Nicotinate phosphoribosyltransferase catalyses the formation of NAMN and PPi from 5-phosphoribosy -1-pyrophosphate (PRPP) and nicotinic acid, this is the first, and also rate limiting, reaction in the NAD salvage synthesis. This salvage pathway serves to recycle NAD degradation products. |
| >PRK10415 tRNA-dihydrouridine synthase B; Provisional | Back alignment and domain information |
|---|
Probab=89.23 E-value=3.6 Score=40.13 Aligned_cols=38 Identities=11% Similarity=0.398 Sum_probs=31.0
Q ss_pred CCHHHHHHHHHhcCCCEEEEe-ccCHHH-----HHcCCcEEEEc
Q 017781 212 LSWKDVKWLQTITKLPILVKG-VLTAED-----VQAGAAGIIVS 249 (366)
Q Consensus 212 ~~~~~i~~lr~~~~~pv~vK~-v~~~~d-----~~aGad~I~vs 249 (366)
..|+.++++++.+++||+.=| +.++++ ...|+|+|.++
T Consensus 181 a~~~~i~~ik~~~~iPVI~nGgI~s~~da~~~l~~~gadgVmiG 224 (321)
T PRK10415 181 AEYDSIRAVKQKVSIPVIANGDITDPLKARAVLDYTGADALMIG 224 (321)
T ss_pred cChHHHHHHHHhcCCcEEEeCCCCCHHHHHHHHhccCCCEEEEC
Confidence 468999999999999988876 468877 45799999773
|
|
| >cd00377 ICL_PEPM Members of the ICL/PEPM enzyme family catalyze either P-C or C-C bond formation/cleavage | Back alignment and domain information |
|---|
Probab=89.20 E-value=19 Score=33.60 Aligned_cols=175 Identities=20% Similarity=0.179 Sum_probs=94.2
Q ss_pred hHHHHHHHHHcCCceec-CCC-----------CCCCHHHHhcc-------CCCceEEEee-ecCCHHHHHHHHHHHHHcC
Q 017781 90 EYATARAASAAGTIMTL-SSW-----------STSSVEEVAST-------GPGIRFFQLY-VYKDRNVVAQLVRRAERAG 149 (366)
Q Consensus 90 e~~la~aa~~~G~~~~v-s~~-----------~~~~~e~i~~~-------~~~~~~~Qly-~~~d~~~~~~~l~ra~~~G 149 (366)
+...|+.+++.|+..+. |+. ...+.+++... ...|...-+- ...+.+...+.+++..++|
T Consensus 18 D~~sA~~~e~~G~~ai~~s~~~~~~s~G~pD~~~~~~~e~~~~~~~I~~~~~~Pv~~D~~~G~g~~~~~~~~v~~~~~~G 97 (243)
T cd00377 18 DALSARLAERAGFKAIYTSGAGVAASLGLPDGGLLTLDEVLAAVRRIARAVDLPVIADADTGYGNALNVARTVRELEEAG 97 (243)
T ss_pred CHHHHHHHHHcCCCEEEeccHHHHHhcCCCCCCcCCHHHHHHHHHHHHhhccCCEEEEcCCCCCCHHHHHHHHHHHHHcC
Confidence 66899999999988764 321 11355554332 2223332221 1235667778888888899
Q ss_pred CCEEEEecCCCCCcchhHHHhhhcCCCCccccccccccccCCCccccchhhHHHhhhccCCCCCHHHHHHHHHhc----C
Q 017781 150 FKAIALTVDTPRLGRREADIKNRFTLPPFLTLKNFQGLDLGKMDEANDSGLAAYVAGQIDRSLSWKDVKWLQTIT----K 225 (366)
Q Consensus 150 ~~ai~vtvd~p~~g~r~~d~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~i~~lr~~~----~ 225 (366)
+.++.+. |.. .|++... +.. ... .+.+.-.+.|+..++.. +
T Consensus 98 ~~gv~iE-D~~--------------~~k~~g~--~~~--------------~~~----~~~ee~~~ki~aa~~a~~~~~~ 142 (243)
T cd00377 98 AAGIHIE-DQV--------------GPKKCGH--HGG--------------KVL----VPIEEFVAKIKAARDARDDLPD 142 (243)
T ss_pred CEEEEEe-cCC--------------CCccccC--CCC--------------Cee----cCHHHHHHHHHHHHHHHhccCC
Confidence 9888763 211 1111000 000 000 00111123355555543 3
Q ss_pred CCEEEE-----ec-cCHHH--------HHcCCcEEEEcCCCccCCCCCcchHHHHHHHHHHcCCCceEEEe--cCCCCHH
Q 017781 226 LPILVK-----GV-LTAED--------VQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLD--GGVRRGT 289 (366)
Q Consensus 226 ~pv~vK-----~v-~~~~d--------~~aGad~I~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~i~vi~~--GGI~~~~ 289 (366)
.+|+.. .. .+.++ .++|||+|.+.+ +.+.+.+.++.+.. +.||++. .+-. ..
T Consensus 143 ~~IiARTDa~~~~~~~~~eai~Ra~ay~~AGAD~v~v~~---------~~~~~~~~~~~~~~--~~Pl~~~~~~~~~-~~ 210 (243)
T cd00377 143 FVIIARTDALLAGEEGLDEAIERAKAYAEAGADGIFVEG---------LKDPEEIRAFAEAP--DVPLNVNMTPGGN-LL 210 (243)
T ss_pred eEEEEEcCchhccCCCHHHHHHHHHHHHHcCCCEEEeCC---------CCCHHHHHHHHhcC--CCCEEEEecCCCC-CC
Confidence 455555 11 34444 999999998743 22557777777776 5676654 2321 02
Q ss_pred HHHHHHHhCcCEEEecHHHHHH
Q 017781 290 DVFKALALGASGIFIGRPVVYS 311 (366)
Q Consensus 290 dv~kalalGAd~V~igr~~l~~ 311 (366)
.+-..-++|.+.|.+|...+++
T Consensus 211 ~~~~l~~lG~~~v~~~~~~~~~ 232 (243)
T cd00377 211 TVAELAELGVRRVSYGLALLRA 232 (243)
T ss_pred CHHHHHHCCCeEEEEChHHHHH
Confidence 3334446799999999877664
|
Known members are phosphoenolpyruvate mutase (PEPM), phosphonopyruvate hydrolase (PPH), carboxyPEP mutase (CPEP mutase), oxaloacetate hydrolase (OAH), isocitrate lyase (ICL), and 2-methylisocitrate lyase (MICL). Isocitrate lyase (ICL) catalyzes the conversion of isocitrate to succinate and glyoxylate, the first committed step in the glyoxylate pathway. This carbon-conserving pathway is present in most prokaryotes, lower eukaryotes and plants, but has not been observed in vertebrates. PEP mutase (PEPM) turns phosphoenolpyruvate (PEP) into phosphonopyruvate (P-pyr), an important intermediate in the formation of organophosphonates, which function as antibiotics or play a role in pathogenesis or signaling. P-pyr can be hydrolyzed by phosphonopyruvate hydrolase (PPH) to from pyruvate and phosphate. Oxaloacetate acetylhydrolase (OAH) catalyzes the hydrolytic cleavage of oxaloacetate to |
| >PRK08318 dihydropyrimidine dehydrogenase subunit B; Validated | Back alignment and domain information |
|---|
Probab=89.19 E-value=1.1 Score=45.28 Aligned_cols=107 Identities=21% Similarity=0.235 Sum_probs=59.9
Q ss_pred CceEEEeeecCCHHHHHHHHHHHHHcCCCEEEEecCCCCCcchhHHHhhhcCCCCccccccccccccCCCccccchhhHH
Q 017781 123 GIRFFQLYVYKDRNVVAQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLTLKNFQGLDLGKMDEANDSGLAA 202 (366)
Q Consensus 123 ~~~~~Qly~~~d~~~~~~~l~ra~~~G~~ai~vtvd~p~~g~r~~d~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~ 202 (366)
.|.++.|-+ +...+.++++.++++|++++.++ |+-.. .-.-|+...-..| .++. ... .+
T Consensus 169 ~Pv~vKl~p--~~~~~~~~a~~~~~~Gadgi~~~-Nt~~~-~~~id~~~~~~~p------~~~~-------~~~---~g- 227 (420)
T PRK08318 169 LPVIVKLTP--NITDIREPARAAKRGGADAVSLI-NTINS-ITGVDLDRMIPMP------IVNG-------KSS---HG- 227 (420)
T ss_pred CcEEEEcCC--CcccHHHHHHHHHHCCCCEEEEe-cccCc-cccccccccCCCc------eecC-------CCC---cc-
Confidence 578888864 33336788888999999998754 32110 0000110000000 0000 000 00
Q ss_pred HhhhccCCCCCHHHHHHHHHhc---CCCEEE-EeccCHHH----HHcCCcEEEEcC
Q 017781 203 YVAGQIDRSLSWKDVKWLQTIT---KLPILV-KGVLTAED----VQAGAAGIIVSN 250 (366)
Q Consensus 203 ~~~~~~d~~~~~~~i~~lr~~~---~~pv~v-K~v~~~~d----~~aGad~I~vs~ 250 (366)
.++.....+..|+.|.++++.+ ++||+- .|+.+.+| ..+|||+|.+..
T Consensus 228 g~SG~a~~p~~l~~v~~~~~~~~~~~ipIig~GGI~s~~da~e~i~aGA~~Vqi~t 283 (420)
T PRK08318 228 GYCGPAVKPIALNMVAEIARDPETRGLPISGIGGIETWRDAAEFILLGAGTVQVCT 283 (420)
T ss_pred cccchhhhHHHHHHHHHHHhccccCCCCEEeecCcCCHHHHHHHHHhCCChheeee
Confidence 0111011234789999999987 789774 46789888 889999998754
|
|
| >cd02810 DHOD_DHPD_FMN Dihydroorotate dehydrogenase (DHOD) and Dihydropyrimidine dehydrogenase (DHPD) FMN-binding domain | Back alignment and domain information |
|---|
Probab=89.16 E-value=1.6 Score=41.61 Aligned_cols=151 Identities=25% Similarity=0.289 Sum_probs=83.1
Q ss_pred CCceEecccccccccCChhhHHHHHHHHHcCCcee-c--CCCC-C------C---CH----HHHhccCCCceEEEeeecC
Q 017781 71 SMPIMIAPTAMQKMAHPEGEYATARAASAAGTIMT-L--SSWS-T------S---SV----EEVASTGPGIRFFQLYVYK 133 (366)
Q Consensus 71 ~~Pi~iApm~~~~l~~~~~e~~la~aa~~~G~~~~-v--s~~~-~------~---~~----e~i~~~~~~~~~~Qly~~~ 133 (366)
..|++++ +.+. .++.=...++.+.+.|+.++ + |.-. . . .+ +.+++....|.++.+-...
T Consensus 98 ~~pvi~s-i~g~---~~~~~~~~a~~~~~~G~d~ielN~~cP~~~~~~~~~~~~~~~~eiv~~vr~~~~~pv~vKl~~~~ 173 (289)
T cd02810 98 GQPLIAS-VGGS---SKEDYVELARKIERAGAKALELNLSCPNVGGGRQLGQDPEAVANLLKAVKAAVDIPLLVKLSPYF 173 (289)
T ss_pred CCeEEEE-eccC---CHHHHHHHHHHHHHhCCCEEEEEcCCCCCCCCcccccCHHHHHHHHHHHHHccCCCEEEEeCCCC
Confidence 4676654 3332 22323477888888887655 2 2110 0 0 11 2223333346777776666
Q ss_pred CHHHHHHHHHHHHHcCCCEEEEecCCCCCcchhHHHhhhcCCCCccccccccccccCCCccccchhhHHHhhhccCCCCC
Q 017781 134 DRNVVAQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLTLKNFQGLDLGKMDEANDSGLAAYVAGQIDRSLS 213 (366)
Q Consensus 134 d~~~~~~~l~ra~~~G~~ai~vtvd~p~~g~r~~d~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~ 213 (366)
+.+.+.++++.++++|++++.++-..... ..+... ..|. .. ....+ ++........
T Consensus 174 ~~~~~~~~a~~l~~~Gad~i~~~~~~~~~---~~~~~~--~~~~---~~------------~~~~g----~sg~~~~~~~ 229 (289)
T cd02810 174 DLEDIVELAKAAERAGADGLTAINTISGR---VVDLKT--VGPG---PK------------RGTGG----LSGAPIRPLA 229 (289)
T ss_pred CHHHHHHHHHHHHHcCCCEEEEEcccCcc---ceeccc--Cccc---cC------------CCCCc----cCcHHHHHHH
Confidence 66678889999999999999886332110 000000 0000 00 00000 0000011235
Q ss_pred HHHHHHHHHhc--CCCEEEEe-ccCHHH----HHcCCcEEEEc
Q 017781 214 WKDVKWLQTIT--KLPILVKG-VLTAED----VQAGAAGIIVS 249 (366)
Q Consensus 214 ~~~i~~lr~~~--~~pv~vK~-v~~~~d----~~aGad~I~vs 249 (366)
++.++++++.. ++||+.=| +.+.++ ..+|||+|.+.
T Consensus 230 ~~~v~~i~~~~~~~ipiia~GGI~~~~da~~~l~~GAd~V~vg 272 (289)
T cd02810 230 LRWVARLAARLQLDIPIIGVGGIDSGEDVLEMLMAGASAVQVA 272 (289)
T ss_pred HHHHHHHHHhcCCCCCEEEECCCCCHHHHHHHHHcCccHheEc
Confidence 78899999988 79988775 467777 88999999764
|
DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences and cellular location. Members of class 1 are cytosolic enzymes and multimers while class 2 enzymes are membrane associated and monomeric. The class 1 enzymes can be further divided into subtypes 1A and 1B which are homodimers and heterotetrameric proteins, respectively. DHPD catalyzes the first step in pyrimidine degradation: the NADPH-dependent reduction of uracil and thymine to the corresponding 5,6-dihydropyrimidines. DHPD contains two FAD, two FMN and eight [4Fe-4S] clusters, arranged in two electron transfer chains that pass its homodimeric interface twice. Two of |
| >cd04740 DHOD_1B_like Dihydroorotate dehydrogenase (DHOD) class 1B FMN-binding domain | Back alignment and domain information |
|---|
Probab=89.12 E-value=4.1 Score=38.92 Aligned_cols=87 Identities=23% Similarity=0.293 Sum_probs=50.6
Q ss_pred HHHHHHHhcCCCEEEEec-cCHHH--------HHcCCcEEEEcCC------CccCCCCCcc-hHHHHHHHHHHcCCCceE
Q 017781 216 DVKWLQTITKLPILVKGV-LTAED--------VQAGAAGIIVSNH------GARQLDYVPA-TIMALEEVVKATQGRIPV 279 (366)
Q Consensus 216 ~i~~lr~~~~~pv~vK~v-~~~~d--------~~aGad~I~vs~~------gg~~~~~~~~-~~~~l~~i~~~~~~~i~v 279 (366)
.+...++..+.|+++=.. .+.++ .++|+|+|.+.-+ +|.++...+. ..+.+..+++.+ ++||
T Consensus 80 ~~~~~~~~~~~p~ivsi~g~~~~~~~~~a~~~~~~G~d~iElN~~cP~~~~~g~~~~~~~~~~~eiv~~vr~~~--~~Pv 157 (296)
T cd04740 80 ELLPWLREFGTPVIASIAGSTVEEFVEVAEKLADAGADAIELNISCPNVKGGGMAFGTDPEAVAEIVKAVKKAT--DVPV 157 (296)
T ss_pred HHHHHhhcCCCcEEEEEecCCHHHHHHHHHHHHHcCCCEEEEECCCCCCCCCcccccCCHHHHHHHHHHHHhcc--CCCE
Confidence 344444445789888764 34555 7889999998421 1222211121 224455555555 6787
Q ss_pred EE--ecCCCCHHHHHHHH-HhCcCEEEe
Q 017781 280 FL--DGGVRRGTDVFKAL-ALGASGIFI 304 (366)
Q Consensus 280 i~--~GGI~~~~dv~kal-alGAd~V~i 304 (366)
++ +..+.+..++++.+ ++|||++.+
T Consensus 158 ~vKl~~~~~~~~~~a~~~~~~G~d~i~~ 185 (296)
T cd04740 158 IVKLTPNVTDIVEIARAAEEAGADGLTL 185 (296)
T ss_pred EEEeCCCchhHHHHHHHHHHcCCCEEEE
Confidence 75 33444566777655 589998865
|
DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences and cellular location. Members of class 1 are cytosolic enzymes and multimers while class 2 enzymes are membrane associated and monomeric. The class 1 enzymes can be further divided into subtypes 1A and 1B which are homodimers and heterotetrameric proteins, respectively. |
| >TIGR00674 dapA dihydrodipicolinate synthase | Back alignment and domain information |
|---|
Probab=88.58 E-value=23 Score=33.70 Aligned_cols=84 Identities=14% Similarity=-0.016 Sum_probs=49.7
Q ss_pred CceEecccccccccCChhhHHHHHHHHHcCCceec--C---CCCCCCHHHHhc-------cC-C-CceEEEeeecCCHHH
Q 017781 72 MPIMIAPTAMQKMAHPEGEYATARAASAAGTIMTL--S---SWSTSSVEEVAS-------TG-P-GIRFFQLYVYKDRNV 137 (366)
Q Consensus 72 ~Pi~iApm~~~~l~~~~~e~~la~aa~~~G~~~~v--s---~~~~~~~e~i~~-------~~-~-~~~~~Qly~~~d~~~ 137 (366)
.|.++.|+.-.+-.+.++-..+.+-+-+.|+-.++ + ++.+.+.+|..+ .. + .+.++++. ..+.+.
T Consensus 3 ~~a~~TPf~~~g~iD~~~~~~~i~~l~~~Gv~Gi~~~GstGE~~~Ls~~Er~~~~~~~~~~~~~~~~vi~gv~-~~s~~~ 81 (285)
T TIGR00674 3 ITALITPFKEDGSVDFAALEKLIDFQIENGTDAIVVVGTTGESPTLSHEEHKKVIEFVVDLVNGRVPVIAGTG-SNATEE 81 (285)
T ss_pred cCceeCCcCCCCCcCHHHHHHHHHHHHHcCCCEEEECccCcccccCCHHHHHHHHHHHHHHhCCCCeEEEeCC-CccHHH
Confidence 35566776433333334445667777778866543 2 334456665432 22 2 34566653 234566
Q ss_pred HHHHHHHHHHcCCCEEEEe
Q 017781 138 VAQLVRRAERAGFKAIALT 156 (366)
Q Consensus 138 ~~~~l~ra~~~G~~ai~vt 156 (366)
+.++.+.+++.|++++++.
T Consensus 82 ~i~~a~~a~~~Gad~v~v~ 100 (285)
T TIGR00674 82 AISLTKFAEDVGADGFLVV 100 (285)
T ss_pred HHHHHHHHHHcCCCEEEEc
Confidence 7778889999999999873
|
Dihydrodipicolinate synthase is a homotetrameric enzyme of lysine biosynthesis. E. coli has several paralogs closely related to dihydrodipicoline synthase (DapA), as well as the more distant N-acetylneuraminate lyase. In Pyrococcus horikoshii, the bidirectional best hit with E. coli is to an uncharacterized paralog of DapA, not DapA itself, and it is omitted from the seed. The putative members from the Chlamydias (pathogens with a parasitic metabolism) are easily the most divergent members of the multiple alignment. |
| >TIGR01521 FruBisAldo_II_B fructose-bisphosphate aldolase, class II, Calvin cycle subtype | Back alignment and domain information |
|---|
Probab=88.52 E-value=7.8 Score=38.23 Aligned_cols=103 Identities=16% Similarity=0.240 Sum_probs=71.0
Q ss_pred HHcCCcEEEEcC---CCccCCCCCc----chHHHHHHHHHHcCCCceEEEecCCCCH----------------------H
Q 017781 239 VQAGAAGIIVSN---HGARQLDYVP----ATIMALEEVVKATQGRIPVFLDGGVRRG----------------------T 289 (366)
Q Consensus 239 ~~aGad~I~vs~---~gg~~~~~~~----~~~~~l~~i~~~~~~~i~vi~~GGI~~~----------------------~ 289 (366)
.+.|+|.+-++. ||-+.....| -.++.|.+|++.++ ++|+..=||=..+ +
T Consensus 181 ~~TgvD~LAvaiGt~HG~Yk~~~~p~~~~Ld~~rL~eI~~~v~-~vPLVLHGgSG~p~~~~~~~~~~~~~~~~~~g~p~e 259 (347)
T TIGR01521 181 KKTKVDALAVAIGTSHGAYKFTRKPTGEVLAIQRIEEIHARLP-DTHLVMHGSSSVPQEWLDIINEYGGEIKETYGVPVE 259 (347)
T ss_pred HHHCcCEEehhcccccCCcCCCCCCChhhcCHHHHHHHHccCC-CCCEEEeCCCCCchHhhHHHHhhcccccccCCCCHH
Confidence 667899998874 4432211012 35788999998873 5999998876555 8
Q ss_pred HHHHHHHhCcCEEEecHHHHHHhhh-------cC------HHHHHHHHHHHHHHHHHHHHHcCCCC
Q 017781 290 DVFKALALGASGIFIGRPVVYSLAA-------EG------EKGVRRVLEMLREEFELAMALSGCRS 342 (366)
Q Consensus 290 dv~kalalGAd~V~igr~~l~~l~~-------~G------~~gv~~~~~~l~~el~~~m~~~G~~~ 342 (366)
++.||+.+|..-|-+++-+-.+... .. ..-.....+.+++-.+..|..+|...
T Consensus 260 ~i~~ai~~GI~KVNi~Tdl~~a~~~~~~~~~~~~~~~~d~~~~~~~~~~a~~~~v~~~i~~~gs~~ 325 (347)
T TIGR01521 260 EIVEGIKYGVRKVNIDTDLRLASTAAFRRFAAQNPSEFDPRKFLKPTVEAMRDVCIARYEAFGTAG 325 (347)
T ss_pred HHHHHHHCCCeeEEeChHHHHHHHHHHHHHHHhCCCcCCHHHHHHHHHHHHHHHHHHHHHHhCCCC
Confidence 8999999999999999976543210 11 12234445667888888899988653
|
Members of this family are class II examples of the enzyme fructose-bisphosphate aldolase, an enzyme both of glycolysis and (in the opposite direction) of the Calvin cycle of CO2 fixation. A deep split separates the tightly conserved yeast/E. coli/Mycobacterium subtype (all species lacking the Calvin cycle) represented by model TIGR01520 from a broader group of aldolases that includes both tagatose- and fructose-bisphosphate aldolases. This model represents a distinct, elongated, very well conserved subtype within the latter group. Most species with this aldolase subtype have the Calvin cycle. |
| >cd00951 KDGDH 5-dehydro-4-deoxyglucarate dehydratase, also called 5-keto-4-deoxy-glucarate dehydratase (KDGDH), which is member of dihydrodipicolinate synthase (DHDPS) family that comprises several pyruvate-dependent class I aldolases | Back alignment and domain information |
|---|
Probab=88.45 E-value=24 Score=33.74 Aligned_cols=82 Identities=13% Similarity=0.086 Sum_probs=51.9
Q ss_pred CceEecccccccccCChhhHHHHHHHHHcCCceec-----CCCCCCCHHHHhc-------cCC--CceEEEeeecCCHHH
Q 017781 72 MPIMIAPTAMQKMAHPEGEYATARAASAAGTIMTL-----SSWSTSSVEEVAS-------TGP--GIRFFQLYVYKDRNV 137 (366)
Q Consensus 72 ~Pi~iApm~~~~l~~~~~e~~la~aa~~~G~~~~v-----s~~~~~~~e~i~~-------~~~--~~~~~Qly~~~d~~~ 137 (366)
.|.++.|+.-..-...++-..+.+..-+.|+...+ |++...+.||..+ ... -|.+.++. . +...
T Consensus 5 ~~a~vTPf~~dg~iD~~~l~~l~~~l~~~Gv~gi~v~GstGE~~~Ls~eEr~~l~~~~~~~~~~~~pvi~gv~-~-~t~~ 82 (289)
T cd00951 5 LSFPVTHFDADGSFDEDAYRAHVEWLLSYGAAALFAAGGTGEFFSLTPDEYAQVVRAAVEETAGRVPVLAGAG-Y-GTAT 82 (289)
T ss_pred EEEeecCCCCCCCcCHHHHHHHHHHHHHcCCCEEEECcCCcCcccCCHHHHHHHHHHHHHHhCCCCCEEEecC-C-CHHH
Confidence 35566776433333344445788888888876543 2344566665432 222 35566664 3 6667
Q ss_pred HHHHHHHHHHcCCCEEEE
Q 017781 138 VAQLVRRAERAGFKAIAL 155 (366)
Q Consensus 138 ~~~~l~ra~~~G~~ai~v 155 (366)
..+++++++++|++++.+
T Consensus 83 ~i~~a~~a~~~Gad~v~~ 100 (289)
T cd00951 83 AIAYAQAAEKAGADGILL 100 (289)
T ss_pred HHHHHHHHHHhCCCEEEE
Confidence 778899999999999987
|
The enzyme is involved in glucarate metabolism, and its mechanism presumbly involves a Schiff-base intermediate similar to members of DHDPS family. While in the case of Pseudomonas sp. 5-dehydro-4-deoxy-D-glucarate is degraded by KDGDH to 2,5-dioxopentanoate, in certain species of Enterobacteriaceae it is degraded instead to pyruvate and glycerate. |
| >PRK09196 fructose-1,6-bisphosphate aldolase; Reviewed | Back alignment and domain information |
|---|
Probab=88.44 E-value=7.4 Score=38.42 Aligned_cols=103 Identities=13% Similarity=0.229 Sum_probs=70.6
Q ss_pred HHcCCcEEEEcC---CCccCCCCCc----chHHHHHHHHHHcCCCceEEEecCCCC----------------------HH
Q 017781 239 VQAGAAGIIVSN---HGARQLDYVP----ATIMALEEVVKATQGRIPVFLDGGVRR----------------------GT 289 (366)
Q Consensus 239 ~~aGad~I~vs~---~gg~~~~~~~----~~~~~l~~i~~~~~~~i~vi~~GGI~~----------------------~~ 289 (366)
.+.|+|.+-++. ||-+.....| -.++.|.+|++.++ ++|+..=||=.. -+
T Consensus 183 ~~TgvD~LAvaiGT~HG~Yk~~~~p~~~~LdfdrL~eI~~~v~-~vPLVLHGgSG~~~~~~~~~~~~g~~~~~~~G~~~e 261 (347)
T PRK09196 183 KKTQVDALAIAIGTSHGAYKFTRKPTGDVLAIDRIKEIHARLP-NTHLVMHGSSSVPQELLDIINEYGGDMPETYGVPVE 261 (347)
T ss_pred HHhCcCeEhhhhccccCCCCCCCCCChhhccHHHHHHHHhcCC-CCCEEEeCCCCCCHHHHHHHHHhcCCccccCCCCHH
Confidence 678999998875 4432211112 36788999998873 599988886543 47
Q ss_pred HHHHHHHhCcCEEEecHHHHHHhhh-------cC------HHHHHHHHHHHHHHHHHHHHHcCCCC
Q 017781 290 DVFKALALGASGIFIGRPVVYSLAA-------EG------EKGVRRVLEMLREEFELAMALSGCRS 342 (366)
Q Consensus 290 dv~kalalGAd~V~igr~~l~~l~~-------~G------~~gv~~~~~~l~~el~~~m~~~G~~~ 342 (366)
++.||+.+|..-|-+++-+..+... .. ..-.....+.+++..+..|+.+|...
T Consensus 262 ~i~~ai~~GI~KINi~Tdl~~a~~~~i~~~~~~~~~~~d~~~~~~~~~~~~~~~v~~~i~~~gs~~ 327 (347)
T PRK09196 262 EIQEGIKHGVRKVNIDTDLRLAMTGAIRRFLAENPSEFDPRKYLKPAMEAMKKICKARYEAFGTAG 327 (347)
T ss_pred HHHHHHHCCCceEEeChHHHHHHHHHHHHHHHhCCCcCCHHHHHHHHHHHHHHHHHHHHHHhCCCC
Confidence 7899999999999999977554211 00 12233445677888888999998653
|
|
| >cd00429 RPE Ribulose-5-phosphate 3-epimerase (RPE) | Back alignment and domain information |
|---|
Probab=88.22 E-value=18 Score=32.16 Aligned_cols=86 Identities=15% Similarity=0.067 Sum_probs=51.6
Q ss_pred CCHHHHHHHHHhcCCCEEEEec-cCHHH-----HHcCCcEEEEcCCCccCCCCCcchHHHHHHHHHHcCCCceEEEecCC
Q 017781 212 LSWKDVKWLQTITKLPILVKGV-LTAED-----VQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGV 285 (366)
Q Consensus 212 ~~~~~i~~lr~~~~~pv~vK~v-~~~~d-----~~aGad~I~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~i~vi~~GGI 285 (366)
+..+.++++++.++.|+.+... .++++ .++|+|+|.++. +.. ....+.+..+++ . .+.+..+-.-
T Consensus 44 ~~~~~~~~i~~~~~~~~~v~l~~~d~~~~~~~~~~~g~dgv~vh~--~~~----~~~~~~~~~~~~-~--~~~~g~~~~~ 114 (211)
T cd00429 44 FGPPVVKALRKHTDLPLDVHLMVENPERYIEAFAKAGADIITFHA--EAT----DHLHRTIQLIKE-L--GMKAGVALNP 114 (211)
T ss_pred cCHHHHHHHHhhCCCcEEEEeeeCCHHHHHHHHHHcCCCEEEECc--cch----hhHHHHHHHHHH-C--CCeEEEEecC
Confidence 4557888898876556654433 23333 899999998854 210 112233333332 2 4555554455
Q ss_pred CCHHHHHHHHHhCcCEEEecH
Q 017781 286 RRGTDVFKALALGASGIFIGR 306 (366)
Q Consensus 286 ~~~~dv~kalalGAd~V~igr 306 (366)
.+..+..+.+..++|.+.++.
T Consensus 115 ~~~~~~~~~~~~~~d~i~~~~ 135 (211)
T cd00429 115 GTPVEVLEPYLDEVDLVLVMS 135 (211)
T ss_pred CCCHHHHHHHHhhCCEEEEEE
Confidence 556777788877799998874
|
This enzyme catalyses the interconversion of D-ribulose 5-phosphate (Ru5P) into D-xylulose 5-phosphate, as part of the Calvin cycle (reductive pentose phosphate pathway) in chloroplasts and in the oxidative pentose phosphate pathway. In the Calvin cycle Ru5P is phosphorylated by phosphoribulose kinase to ribulose-1,5-bisphosphate, which in turn is used by RubisCO (ribulose-1,5-bisphosphate carboxylase/oxygenase) to incorporate CO2 as the central step in carbohydrate synthesis. |
| >cd02940 DHPD_FMN Dihydropyrimidine dehydrogenase (DHPD) FMN-binding domain | Back alignment and domain information |
|---|
Probab=88.03 E-value=2.7 Score=40.44 Aligned_cols=107 Identities=17% Similarity=0.219 Sum_probs=60.2
Q ss_pred CceEEEeeecCCHHHHHHHHHHHHHcCCCEEEEecCCCCCcchhHHHhhhcCCCCccccccccccccCCCccccchhhHH
Q 017781 123 GIRFFQLYVYKDRNVVAQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLTLKNFQGLDLGKMDEANDSGLAA 202 (366)
Q Consensus 123 ~~~~~Qly~~~d~~~~~~~l~ra~~~G~~ai~vtvd~p~~g~r~~d~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~ 202 (366)
.|.++.|-+ +...+.++++.++++|+++++++ |+-. +.-..|+... . |. .. ++ ..+. .+
T Consensus 169 ~Pv~vKl~~--~~~~~~~~a~~~~~~Gadgi~~~-Nt~~-~~~~id~~~~-~-~~-~~---~~-------~~~~---~g- 227 (299)
T cd02940 169 IPVIAKLTP--NITDIREIARAAKEGGADGVSAI-NTVN-SLMGVDLDGT-P-PA-PG---VE-------GKTT---YG- 227 (299)
T ss_pred CCeEEECCC--CchhHHHHHHHHHHcCCCEEEEe-cccc-cccccccccC-C-cc-cc---cc-------CCCC---cC-
Confidence 578888753 44456788889999999998764 2110 0000000000 0 00 00 00 0000 00
Q ss_pred HhhhccCCCCCHHHHHHHHHhc--CCCEEEE-eccCHHH----HHcCCcEEEEcC
Q 017781 203 YVAGQIDRSLSWKDVKWLQTIT--KLPILVK-GVLTAED----VQAGAAGIIVSN 250 (366)
Q Consensus 203 ~~~~~~d~~~~~~~i~~lr~~~--~~pv~vK-~v~~~~d----~~aGad~I~vs~ 250 (366)
.++.....+.+|+.|.++++.+ ++||+.= ++.+.+| ..+|||+|.+..
T Consensus 228 g~sG~a~~p~~l~~v~~~~~~~~~~ipIig~GGI~~~~da~~~l~aGA~~V~i~t 282 (299)
T cd02940 228 GYSGPAVKPIALRAVSQIARAPEPGLPISGIGGIESWEDAAEFLLLGASVVQVCT 282 (299)
T ss_pred cccCCCcchHHHHHHHHHHHhcCCCCcEEEECCCCCHHHHHHHHHcCCChheEce
Confidence 0111112335799999999999 7897766 4678888 789999998743
|
DHPD catalyzes the first step in pyrimidine degradation: the NADPH-dependent reduction of uracil and thymine to the corresponding 5,6-dihydropyrimidines. DHPD contains two FAD, two FMN, and eight [4Fe-4S] clusters, arranged in two electron transfer chains that pass the dimer interface twice. Two of the Fe-S clusters show a hitherto unobserved coordination involving a glutamine residue. |
| >COG0352 ThiE Thiamine monophosphate synthase [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=87.89 E-value=15 Score=33.68 Aligned_cols=40 Identities=23% Similarity=0.525 Sum_probs=34.4
Q ss_pred CCCCHHHHHHHHHhcCCCEEEEeccCHHH----HHcCCcEEEEc
Q 017781 210 RSLSWKDVKWLQTITKLPILVKGVLTAED----VQAGAAGIIVS 249 (366)
Q Consensus 210 ~~~~~~~i~~lr~~~~~pv~vK~v~~~~d----~~aGad~I~vs 249 (366)
+...|+.++|+++...+|++.-|..+.+. .++|+|+|.|.
T Consensus 143 ~~~G~~~l~~~~~~~~iP~vAIGGi~~~nv~~v~~~Ga~gVAvv 186 (211)
T COG0352 143 PPLGLEGLREIRELVNIPVVAIGGINLENVPEVLEAGADGVAVV 186 (211)
T ss_pred CccCHHHHHHHHHhCCCCEEEEcCCCHHHHHHHHHhCCCeEEeh
Confidence 34578999999999889999998888876 99999999864
|
|
| >cd04738 DHOD_2_like Dihydroorotate dehydrogenase (DHOD) class 2 | Back alignment and domain information |
|---|
Probab=87.75 E-value=1.4 Score=42.94 Aligned_cols=100 Identities=21% Similarity=0.240 Sum_probs=60.4
Q ss_pred CceEEEeeecCCHHHHHHHHHHHHHcCCCEEEEecCCCCCcchhHHHhhhcCCCCccccccccccccCCCccccchhhHH
Q 017781 123 GIRFFQLYVYKDRNVVAQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLTLKNFQGLDLGKMDEANDSGLAA 202 (366)
Q Consensus 123 ~~~~~Qly~~~d~~~~~~~l~ra~~~G~~ai~vtvd~p~~g~r~~d~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~ 202 (366)
.|.++.|-+..+.+.+.++++.++++|+++|.++-..... + ...-|. .. ... +.
T Consensus 203 ~Pv~vKl~~~~~~~~~~~ia~~l~~aGad~I~~~n~~~~~-----~---~~~~~~---~~-------------~~~--gG 256 (327)
T cd04738 203 VPLLVKIAPDLSDEELEDIADVALEHGVDGIIATNTTISR-----P---GLLRSP---LA-------------NET--GG 256 (327)
T ss_pred CCeEEEeCCCCCHHHHHHHHHHHHHcCCcEEEEECCcccc-----c---cccccc---cc-------------CCC--Cc
Confidence 4788888655555567888899999999999876322110 0 000000 00 000 00
Q ss_pred HhhhccCCCCCHHHHHHHHHhc--CCCEEEE-eccCHHH----HHcCCcEEEEc
Q 017781 203 YVAGQIDRSLSWKDVKWLQTIT--KLPILVK-GVLTAED----VQAGAAGIIVS 249 (366)
Q Consensus 203 ~~~~~~d~~~~~~~i~~lr~~~--~~pv~vK-~v~~~~d----~~aGad~I~vs 249 (366)
++........|+.++.+++.. ++||+.= ++.+.+| ..+|||.|.+.
T Consensus 257 -~sG~~~~~~~l~~v~~l~~~~~~~ipIi~~GGI~t~~da~e~l~aGAd~V~vg 309 (327)
T cd04738 257 -LSGAPLKERSTEVLRELYKLTGGKIPIIGVGGISSGEDAYEKIRAGASLVQLY 309 (327)
T ss_pred -cCChhhhHHHHHHHHHHHHHhCCCCcEEEECCCCCHHHHHHHHHcCCCHHhcc
Confidence 000001124678899999988 6888754 5678888 77999999764
|
DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences, their cellular location and their natural electron acceptor used to reoxidize the flavin group. Members of class 1 are cytosolic enzymes and multimers, while class 2 enzymes are membrane associated, monomeric and use respiratory quinones as their physiological electron acceptors. |
| >TIGR00737 nifR3_yhdG putative TIM-barrel protein, nifR3 family | Back alignment and domain information |
|---|
Probab=87.70 E-value=4.7 Score=39.12 Aligned_cols=37 Identities=19% Similarity=0.661 Sum_probs=30.6
Q ss_pred CCHHHHHHHHHhcCCCEEEEe-ccCHHH-----HHcCCcEEEE
Q 017781 212 LSWKDVKWLQTITKLPILVKG-VLTAED-----VQAGAAGIIV 248 (366)
Q Consensus 212 ~~~~~i~~lr~~~~~pv~vK~-v~~~~d-----~~aGad~I~v 248 (366)
..|+.++.+++.+++||+.=| +.++++ .+.|+|+|.+
T Consensus 179 ~~~~~i~~i~~~~~ipvi~nGgI~~~~da~~~l~~~gad~Vmi 221 (319)
T TIGR00737 179 ANWDIIARVKQAVRIPVIGNGDIFSPEDAKAMLETTGCDGVMI 221 (319)
T ss_pred hhHHHHHHHHHcCCCcEEEeCCCCCHHHHHHHHHhhCCCEEEE
Confidence 468899999999999988875 467777 4789999987
|
Members of this family show a distant relationship to alpha/beta (TIM) barrel enzymes such as dihydroorotate dehydrogenase and glycolate oxidase. |
| >PRK03620 5-dehydro-4-deoxyglucarate dehydratase; Provisional | Back alignment and domain information |
|---|
Probab=87.53 E-value=28 Score=33.52 Aligned_cols=82 Identities=13% Similarity=0.068 Sum_probs=52.1
Q ss_pred CceEecccccccccCChhhHHHHHHHHHcCCceec-----CCCCCCCHHHHhc-------cCC--CceEEEeeecCCHHH
Q 017781 72 MPIMIAPTAMQKMAHPEGEYATARAASAAGTIMTL-----SSWSTSSVEEVAS-------TGP--GIRFFQLYVYKDRNV 137 (366)
Q Consensus 72 ~Pi~iApm~~~~l~~~~~e~~la~aa~~~G~~~~v-----s~~~~~~~e~i~~-------~~~--~~~~~Qly~~~d~~~ 137 (366)
.|.++.|+.-.+-...++-..+++...+.|+...+ |++...+.||..+ ... .+.+..+. . +.+.
T Consensus 12 ~~a~vTPf~~dg~iD~~~l~~li~~l~~~Gv~Gi~~~GstGE~~~Lt~eEr~~~~~~~~~~~~~~~pvi~gv~-~-~t~~ 89 (303)
T PRK03620 12 LSFPVTPFDADGSFDEAAYREHLEWLAPYGAAALFAAGGTGEFFSLTPDEYSQVVRAAVETTAGRVPVIAGAG-G-GTAQ 89 (303)
T ss_pred EEeeeCCCCCCCCcCHHHHHHHHHHHHHcCCCEEEECcCCcCcccCCHHHHHHHHHHHHHHhCCCCcEEEecC-C-CHHH
Confidence 56677787543333344445777777788876543 3344566665432 222 35566663 3 6667
Q ss_pred HHHHHHHHHHcCCCEEEE
Q 017781 138 VAQLVRRAERAGFKAIAL 155 (366)
Q Consensus 138 ~~~~l~ra~~~G~~ai~v 155 (366)
+.+++++++++|++++++
T Consensus 90 ~i~~~~~a~~~Gadav~~ 107 (303)
T PRK03620 90 AIEYAQAAERAGADGILL 107 (303)
T ss_pred HHHHHHHHHHhCCCEEEE
Confidence 778889999999999987
|
|
| >PRK00311 panB 3-methyl-2-oxobutanoate hydroxymethyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=87.41 E-value=7.6 Score=36.88 Aligned_cols=135 Identities=22% Similarity=0.240 Sum_probs=0.0
Q ss_pred EecccccccccCChhhHHHHHHHHHcCCceecCCCCCCCH--------------------HHHhccCCCc-----eEEEe
Q 017781 75 MIAPTAMQKMAHPEGEYATARAASAAGTIMTLSSWSTSSV--------------------EEVASTGPGI-----RFFQL 129 (366)
Q Consensus 75 ~iApm~~~~l~~~~~e~~la~aa~~~G~~~~vs~~~~~~~--------------------e~i~~~~~~~-----~~~Ql 129 (366)
++.|..+ +...|+.+.++|+.+++ +.++... ..|++..+.+ .-|-=
T Consensus 17 i~~~tay--------D~~sArl~e~aG~d~i~-vGds~~~~~lG~~Dt~~vtl~em~~h~~~V~r~~~~p~vvaD~pfg~ 87 (264)
T PRK00311 17 IVMLTAY--------DYPFAKLFDEAGVDVIL-VGDSLGMVVLGYDSTLPVTLDDMIYHTKAVARGAPRALVVADMPFGS 87 (264)
T ss_pred EEEEeCC--------CHHHHHHHHHcCCCEEE-ECHHHHHHHcCCCCCCCcCHHHHHHHHHHHHhcCCCCcEEEeCCCCC
Q ss_pred eecCCHHHHHHHHHHHHHcCCCEEEEecCCCCCcchhHHHhhhcCCCCccccccccccccCCCccccchhhHHHhhhccC
Q 017781 130 YVYKDRNVVAQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLTLKNFQGLDLGKMDEANDSGLAAYVAGQID 209 (366)
Q Consensus 130 y~~~d~~~~~~~l~ra~~~G~~ai~vtvd~p~~g~r~~d~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d 209 (366)
|.....+......+..+++|+.++-+ .|
T Consensus 88 y~~~~~~av~~a~r~~~~aGa~aVki----------------------------------------------------Ed 115 (264)
T PRK00311 88 YQASPEQALRNAGRLMKEAGAHAVKL----------------------------------------------------EG 115 (264)
T ss_pred ccCCHHHHHHHHHHHHHHhCCeEEEE----------------------------------------------------cC
Q ss_pred CCCCHHHHHHHHHhcCCCEE---------------EEeccCHHH------------HHcCCcEEEEcCCCccCCCCCcch
Q 017781 210 RSLSWKDVKWLQTITKLPIL---------------VKGVLTAED------------VQAGAAGIIVSNHGARQLDYVPAT 262 (366)
Q Consensus 210 ~~~~~~~i~~lr~~~~~pv~---------------vK~v~~~~d------------~~aGad~I~vs~~gg~~~~~~~~~ 262 (366)
.....+.|+.+++. ++||. .|....-++ .++|||+|++ -+++.
T Consensus 116 g~~~~~~I~al~~a-gIpV~gHiGL~pq~~~~~gg~~i~grt~~~a~~~i~ra~a~~eAGA~~i~l---------E~v~~ 185 (264)
T PRK00311 116 GEEVAETIKRLVER-GIPVMGHLGLTPQSVNVLGGYKVQGRDEEAAEKLLEDAKALEEAGAFALVL---------ECVPA 185 (264)
T ss_pred cHHHHHHHHHHHHC-CCCEeeeecccceeecccCCeeeecCCHHHHHHHHHHHHHHHHCCCCEEEE---------cCCCH
Q ss_pred HHHHHHHHHHcCCCceEEEec
Q 017781 263 IMALEEVVKATQGRIPVFLDG 283 (366)
Q Consensus 263 ~~~l~~i~~~~~~~i~vi~~G 283 (366)
+...++.+.+ ++|+|.-|
T Consensus 186 -~~~~~i~~~l--~iP~igiG 203 (264)
T PRK00311 186 -ELAKEITEAL--SIPTIGIG 203 (264)
T ss_pred -HHHHHHHHhC--CCCEEEec
|
|
| >cd06557 KPHMT-like Ketopantoate hydroxymethyltransferase (KPHMT) is the first enzyme in the pantothenate biosynthesis pathway | Back alignment and domain information |
|---|
Probab=87.38 E-value=6 Score=37.33 Aligned_cols=135 Identities=22% Similarity=0.264 Sum_probs=0.0
Q ss_pred EecccccccccCChhhHHHHHHHHHcCCceecCCCCCC--------------------CHHHHhccCCCc-----eEEEe
Q 017781 75 MIAPTAMQKMAHPEGEYATARAASAAGTIMTLSSWSTS--------------------SVEEVASTGPGI-----RFFQL 129 (366)
Q Consensus 75 ~iApm~~~~l~~~~~e~~la~aa~~~G~~~~vs~~~~~--------------------~~e~i~~~~~~~-----~~~Ql 129 (366)
++.|..+ +...|+.+.++|+.+++ +.++. ....|++..+.| .-|-=
T Consensus 14 l~~~~ay--------D~~sA~l~e~aG~d~i~-vGds~~~~~lG~pDt~~vtl~em~~~~~~V~r~~~~p~viaD~~fg~ 84 (254)
T cd06557 14 IVMLTAY--------DYPTAKLADEAGVDVIL-VGDSLGMVVLGYDSTLPVTLDEMIYHTRAVRRGAPRALVVADMPFGS 84 (254)
T ss_pred EEEEeCC--------CHHHHHHHHHcCCCEEE-ECHHHHHHHcCCCCCCCcCHHHHHHHHHHHHhcCCCCeEEEeCCCCc
Q ss_pred eecCCHHHHHHHHHHHHHcCCCEEEEecCCCCCcchhHHHhhhcCCCCccccccccccccCCCccccchhhHHHhhhccC
Q 017781 130 YVYKDRNVVAQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLTLKNFQGLDLGKMDEANDSGLAAYVAGQID 209 (366)
Q Consensus 130 y~~~d~~~~~~~l~ra~~~G~~ai~vtvd~p~~g~r~~d~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d 209 (366)
|.....+......+..+++|+.++-| .|
T Consensus 85 y~~~~~~av~~a~r~~~~aGa~aVki----------------------------------------------------Ed 112 (254)
T cd06557 85 YQTSPEQALRNAARLMKEAGADAVKL----------------------------------------------------EG 112 (254)
T ss_pred ccCCHHHHHHHHHHHHHHhCCeEEEE----------------------------------------------------cC
Q ss_pred CCCCHHHHHHHHHhcCCCEE---------------EEeccCHHH------------HHcCCcEEEEcCCCccCCCCCcch
Q 017781 210 RSLSWKDVKWLQTITKLPIL---------------VKGVLTAED------------VQAGAAGIIVSNHGARQLDYVPAT 262 (366)
Q Consensus 210 ~~~~~~~i~~lr~~~~~pv~---------------vK~v~~~~d------------~~aGad~I~vs~~gg~~~~~~~~~ 262 (366)
.....+.|+.+++. ++||. .|....-++ .++|||+|++-+ .+
T Consensus 113 ~~~~~~~I~al~~a-gipV~gHiGL~pq~~~~~gg~~~~grt~~~a~~~i~ra~a~~~AGA~~i~lE~----------v~ 181 (254)
T cd06557 113 GAEVAETIRALVDA-GIPVMGHIGLTPQSVNQLGGYKVQGKTEEEAERLLEDALALEEAGAFALVLEC----------VP 181 (254)
T ss_pred cHHHHHHHHHHHHc-CCCeeccccccceeeeccCCceeccCCHHHHHHHHHHHHHHHHCCCCEEEEcC----------CC
Q ss_pred HHHHHHHHHHcCCCceEEEec
Q 017781 263 IMALEEVVKATQGRIPVFLDG 283 (366)
Q Consensus 263 ~~~l~~i~~~~~~~i~vi~~G 283 (366)
-+...++.+.+ ++|+|.-|
T Consensus 182 ~~~~~~i~~~v--~iP~igiG 200 (254)
T cd06557 182 AELAKEITEAL--SIPTIGIG 200 (254)
T ss_pred HHHHHHHHHhC--CCCEEEec
|
Ketopantoate hydroxymethyltransferase (KPHMT) catalyzes the first committed step in the biosynthesis of pantothenate (vitamin B5), which is a precursor to coenzyme A and is required for penicillin biosynthesis. |
| >PRK07259 dihydroorotate dehydrogenase 1B; Reviewed | Back alignment and domain information |
|---|
Probab=87.24 E-value=5.5 Score=38.22 Aligned_cols=86 Identities=21% Similarity=0.248 Sum_probs=51.5
Q ss_pred HHHHHHhcCCCEEEEec-cCHHH--------HHcC-CcEEEEcC------CCccCCCCCc-chHHHHHHHHHHcCCCceE
Q 017781 217 VKWLQTITKLPILVKGV-LTAED--------VQAG-AAGIIVSN------HGARQLDYVP-ATIMALEEVVKATQGRIPV 279 (366)
Q Consensus 217 i~~lr~~~~~pv~vK~v-~~~~d--------~~aG-ad~I~vs~------~gg~~~~~~~-~~~~~l~~i~~~~~~~i~v 279 (366)
+...++.++.|+++=.. .+.++ .++| +|+|.+.- |||..+...+ ...+.+..+++.+ ++||
T Consensus 83 ~~~~~~~~~~p~i~si~g~~~~~~~~~a~~~~~aG~~D~iElN~~cP~~~~gg~~~~~~~~~~~eiv~~vr~~~--~~pv 160 (301)
T PRK07259 83 ELPWLEEFDTPIIANVAGSTEEEYAEVAEKLSKAPNVDAIELNISCPNVKHGGMAFGTDPELAYEVVKAVKEVV--KVPV 160 (301)
T ss_pred HHHHHhccCCcEEEEeccCCHHHHHHHHHHHhccCCcCEEEEECCCCCCCCCccccccCHHHHHHHHHHHHHhc--CCCE
Confidence 33333445789888764 45665 7888 99998832 2232221111 2345566666655 6888
Q ss_pred EEec--CCCCHHHHHHHHH-hCcCEEEe
Q 017781 280 FLDG--GVRRGTDVFKALA-LGASGIFI 304 (366)
Q Consensus 280 i~~G--GI~~~~dv~kala-lGAd~V~i 304 (366)
++-- .+.+..++++.+. .|+|++.+
T Consensus 161 ~vKl~~~~~~~~~~a~~l~~~G~d~i~~ 188 (301)
T PRK07259 161 IVKLTPNVTDIVEIAKAAEEAGADGLSL 188 (301)
T ss_pred EEEcCCCchhHHHHHHHHHHcCCCEEEE
Confidence 7743 3445566777665 89999865
|
|
| >PRK13399 fructose-1,6-bisphosphate aldolase; Provisional | Back alignment and domain information |
|---|
Probab=87.15 E-value=9.8 Score=37.56 Aligned_cols=103 Identities=14% Similarity=0.268 Sum_probs=70.4
Q ss_pred HHcCCcEEEEcC---CCccCCCCCc----chHHHHHHHHHHcCCCceEEEecCCCCH----------------------H
Q 017781 239 VQAGAAGIIVSN---HGARQLDYVP----ATIMALEEVVKATQGRIPVFLDGGVRRG----------------------T 289 (366)
Q Consensus 239 ~~aGad~I~vs~---~gg~~~~~~~----~~~~~l~~i~~~~~~~i~vi~~GGI~~~----------------------~ 289 (366)
.+.|+|.+-++. ||-+.....| -.++.|.+|++.++ ++|+..=||=..+ +
T Consensus 183 ~~TgvD~LAvaiGt~HG~Yk~~~~p~~~~L~~drl~eI~~~v~-~vPLVLHGgSGvp~~~~~~~~~~g~~~~~~~g~~~e 261 (347)
T PRK13399 183 QRTGVDALAIAIGTSHGAYKFTRKPDGDILAIDRIEEIHARLP-NTHLVMHGSSSVPQELQEIINAYGGKMKETYGVPVE 261 (347)
T ss_pred HHHCcCEEhhhhccccCCcCCCCCCChhhccHHHHHHHHhhcC-CCCEEEeCCCCCCHHHHHHHHHhcCCccccCCCCHH
Confidence 567899998874 4432211012 35778999998883 4999998876555 8
Q ss_pred HHHHHHHhCcCEEEecHHHHHHhhh-------cC------HHHHHHHHHHHHHHHHHHHHHcCCCC
Q 017781 290 DVFKALALGASGIFIGRPVVYSLAA-------EG------EKGVRRVLEMLREEFELAMALSGCRS 342 (366)
Q Consensus 290 dv~kalalGAd~V~igr~~l~~l~~-------~G------~~gv~~~~~~l~~el~~~m~~~G~~~ 342 (366)
++.||+.+|..-|-+++-+..+... .. ..-.....+.+++-++..|+++|+..
T Consensus 262 ~~~kai~~GI~KINi~Tdl~~a~~~~~~~~~~~~~~~~d~~~~~~~~~~a~~~~v~~~i~l~gs~~ 327 (347)
T PRK13399 262 EIQRGIKHGVRKVNIDTDIRLAMTGAIRKVLAEHPSEFDPRKALKPAMKAMTALCKQRFEAFGTAG 327 (347)
T ss_pred HHHHHHHCCCeEEEeChHHHHHHHHHHHHHHHhCCCcCCHHHHHHHHHHHHHHHHHHHHHHhCCCC
Confidence 8999999999999999976543211 00 12233445667788888889998754
|
|
| >TIGR03569 NeuB_NnaB N-acetylneuraminate synthase | Back alignment and domain information |
|---|
Probab=87.15 E-value=12 Score=36.64 Aligned_cols=135 Identities=16% Similarity=0.178 Sum_probs=76.5
Q ss_pred cCCHHHHHHHHHHHHHcCCCEEEEecCCCCCcchhHHHhhhcCCCCccccccccccccCCCccccchhhHHHhhhccCCC
Q 017781 132 YKDRNVVAQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLTLKNFQGLDLGKMDEANDSGLAAYVAGQIDRS 211 (366)
Q Consensus 132 ~~d~~~~~~~l~ra~~~G~~ai~vtvd~p~~g~r~~d~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~ 211 (366)
+.|-+...++++.|.++|++++=.-.- +..++..... +.. .+...+.. .+....+... .-.
T Consensus 12 ~Gdl~~A~~lI~~A~~aGadaVKfQt~------~~~~~~~~~~-~~~-------~~~~~~~~--~~~~~~~~~~---~~~ 72 (329)
T TIGR03569 12 NGSLELAKKLVDAAAEAGADAVKFQTF------KAEDLVSKNA-PKA-------EYQKINTG--AEESQLEMLK---KLE 72 (329)
T ss_pred cCcHHHHHHHHHHHHHhCCCEEEeeeC------CHHHhhCccc-ccc-------cccccCCc--CCCcHHHHHH---HhC
Confidence 467888999999999999998754321 1111111000 000 00000000 0001111221 124
Q ss_pred CCHHHHHHHHH---hcCCCEEEEeccCHHH----HHcCCcEEEEcCCCccCCCCCcchHHHHHHHHHHcCCCceEEEecC
Q 017781 212 LSWKDVKWLQT---ITKLPILVKGVLTAED----VQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGG 284 (366)
Q Consensus 212 ~~~~~i~~lr~---~~~~pv~vK~v~~~~d----~~aGad~I~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~i~vi~~GG 284 (366)
++++..+++++ ..+++++. .+.+.++ .+.|++.+.|... ....+..|..+++. ..|||.+-|
T Consensus 73 l~~e~~~~L~~~~~~~Gi~~~s-tpfd~~svd~l~~~~v~~~KIaS~-------~~~n~pLL~~~A~~---gkPvilStG 141 (329)
T TIGR03569 73 LSEEDHRELKEYCESKGIEFLS-TPFDLESADFLEDLGVPRFKIPSG-------EITNAPLLKKIARF---GKPVILSTG 141 (329)
T ss_pred CCHHHHHHHHHHHHHhCCcEEE-EeCCHHHHHHHHhcCCCEEEECcc-------cccCHHHHHHHHhc---CCcEEEECC
Confidence 56665555554 45776543 3444443 7899999988431 22356677777653 689999999
Q ss_pred CCCHHHHHHHHH
Q 017781 285 VRRGTDVFKALA 296 (366)
Q Consensus 285 I~~~~dv~kala 296 (366)
..+-+++..|+.
T Consensus 142 matl~Ei~~Av~ 153 (329)
T TIGR03569 142 MATLEEIEAAVG 153 (329)
T ss_pred CCCHHHHHHHHH
Confidence 999999998875
|
This family is a subset of the Pfam model pfam03102 and is believed to include only authentic NeuB N-acetylneuraminate (sialic acid) synthase enzymes. The majority of the genes identified by this model are observed adjacent to both the NeuA and NeuC genes which together effect the biosynthesis of CMP-N-acetylneuraminate from UDP-N-acetylglucosamine. |
| >TIGR01362 KDO8P_synth 3-deoxy-8-phosphooctulonate synthase | Back alignment and domain information |
|---|
Probab=86.59 E-value=5.2 Score=37.68 Aligned_cols=88 Identities=24% Similarity=0.322 Sum_probs=58.7
Q ss_pred HHHHHHHHHhcCCCEEEEec--cCHHH--------HHcCCcEEEEcCCCccCCCCC--cchHHHHHHHHHHcCCCceEEE
Q 017781 214 WKDVKWLQTITKLPILVKGV--LTAED--------VQAGAAGIIVSNHGARQLDYV--PATIMALEEVVKATQGRIPVFL 281 (366)
Q Consensus 214 ~~~i~~lr~~~~~pv~vK~v--~~~~d--------~~aGad~I~vs~~gg~~~~~~--~~~~~~l~~i~~~~~~~i~vi~ 281 (366)
.+.++.+-+ ++.||.+|-. .++++ ...|-+-|++.-+|- ..... ...+..++.+++ . .+|||+
T Consensus 106 ~~LL~a~g~-t~kpV~lKrG~~~t~~e~l~aaeyi~~~Gn~~viLcERG~-tf~y~r~~~D~~~ip~~k~-~--~~PVi~ 180 (258)
T TIGR01362 106 TDLLVAAAK-TGRIVNVKKGQFLSPWDMKNVVEKVLSTGNKNILLCERGT-SFGYNNLVVDMRSLPIMRE-L--GCPVIF 180 (258)
T ss_pred HHHHHHHhc-cCCeEEecCCCcCCHHHHHHHHHHHHHcCCCcEEEEeCCC-CcCCCCcccchhhhHHHHh-c--CCCEEE
Confidence 455666655 5899999965 57776 778888888876664 22111 224556666654 3 589998
Q ss_pred e---------------cCCCCHH--HHHHHHHhCcCEEEecH
Q 017781 282 D---------------GGVRRGT--DVFKALALGASGIFIGR 306 (366)
Q Consensus 282 ~---------------GGI~~~~--dv~kalalGAd~V~igr 306 (366)
| ||.|.-- -...|+++|||+++|-.
T Consensus 181 DpSHsvq~pg~~g~~s~G~r~~v~~la~AAvA~GaDGl~iEv 222 (258)
T TIGR01362 181 DATHSVQQPGGLGGASGGLREFVPTLARAAVAVGIDGLFMET 222 (258)
T ss_pred eCCccccCCCCCCCCCCCcHHHHHHHHHHHHHhCCCEEEEEe
Confidence 7 5555432 23358889999999985
|
In Gram-negative bacteria, this is the first step in the biosynthesis of 3-deoxy-D-manno-octulosonate, part of the oligosaccharide core of lipopolysaccharide. |
| >TIGR02313 HpaI-NOT-DapA 2,4-dihydroxyhept-2-ene-1,7-dioic acid aldolase | Back alignment and domain information |
|---|
Probab=86.30 E-value=32 Score=32.97 Aligned_cols=84 Identities=14% Similarity=0.005 Sum_probs=51.3
Q ss_pred CceEecccccccccCChhhHHHHHHHHHcCCceec-----CCCCCCCHHHHhc-------cCC--CceEEEeeecCCHHH
Q 017781 72 MPIMIAPTAMQKMAHPEGEYATARAASAAGTIMTL-----SSWSTSSVEEVAS-------TGP--GIRFFQLYVYKDRNV 137 (366)
Q Consensus 72 ~Pi~iApm~~~~l~~~~~e~~la~aa~~~G~~~~v-----s~~~~~~~e~i~~-------~~~--~~~~~Qly~~~d~~~ 137 (366)
.|.++.|+.-.+-...++-..+.+...+.|+-..+ |++.+.+.+|..+ ... .+.+.++.. .+.+.
T Consensus 5 ~~a~~TPf~~dg~iD~~~l~~lv~~~~~~Gv~gi~v~GstGE~~~Ls~~Er~~l~~~~~~~~~g~~pvi~gv~~-~~t~~ 83 (294)
T TIGR02313 5 IAPLITPFKRNGDIDEEALRELIEFQIEGGSHAISVGGTSGEPGSLTLEERKQAIENAIDQIAGRIPFAPGTGA-LNHDE 83 (294)
T ss_pred eeeeeCCcCCCCCcCHHHHHHHHHHHHHcCCCEEEECccCcccccCCHHHHHHHHHHHHHHhCCCCcEEEECCc-chHHH
Confidence 46677887543333334445777777778875432 3445567766432 122 345555542 45555
Q ss_pred HHHHHHHHHHcCCCEEEEe
Q 017781 138 VAQLVRRAERAGFKAIALT 156 (366)
Q Consensus 138 ~~~~l~ra~~~G~~ai~vt 156 (366)
..++++.+++.|++++++.
T Consensus 84 ai~~a~~A~~~Gad~v~v~ 102 (294)
T TIGR02313 84 TLELTKFAEEAGADAAMVI 102 (294)
T ss_pred HHHHHHHHHHcCCCEEEEc
Confidence 6778888999999999873
|
This model represents a subset of the DapA (dihydrodipicolinate synthase) family which has apparently evolved a separate function. The product of DapA, dihydrodipicolinate, results from the non-enzymatic cyclization and dehydration of 6-amino-2,4-dihydroxyhept-2-ene-1,7-dioic acid, which is different from the substrate of this reaction only in the presence of the amino group. In the absence of this amino group, and running the reaction in the opposite direction, the reaction corresponds to the HpaI aldolase component of the 4-hydroxyphenylacetic acid catabolism pathway (see TIGR02311). At present, this variant of DapA is found only in Oceanobacillus iheyensis HTE831 and Thermus thermophilus HB27. In both of these cases, one or more other DapA genes can be found and the one identified by this model is part of an operon for 4-hydroxyphenylacetic acid catabolism. |
| >TIGR00742 yjbN tRNA dihydrouridine synthase A | Back alignment and domain information |
|---|
Probab=86.17 E-value=6.9 Score=38.14 Aligned_cols=38 Identities=24% Similarity=0.373 Sum_probs=29.4
Q ss_pred CCHHHHHHHHHhc-CCCEEEEe-ccCHHH---HHcCCcEEEEc
Q 017781 212 LSWKDVKWLQTIT-KLPILVKG-VLTAED---VQAGAAGIIVS 249 (366)
Q Consensus 212 ~~~~~i~~lr~~~-~~pv~vK~-v~~~~d---~~aGad~I~vs 249 (366)
..|+.+.++++.. ++||+.=| +.+.+| .-.|+|+|-++
T Consensus 181 ~~~~~i~~vk~~~~~ipVi~NGdI~s~~da~~~l~g~dgVMig 223 (318)
T TIGR00742 181 LRYERVYQLKKDFPHLTIEINGGIKNSEQIKQHLSHVDGVMVG 223 (318)
T ss_pred hhHHHHHHHHHhCCCCcEEEECCcCCHHHHHHHHhCCCEEEEC
Confidence 5799999999987 79987654 678888 22399999763
|
Members of this family show a distant relationship to alpha/beta (TIM) barrel enzymes such as dihydroorotate dehydrogenase and glycolate oxidase. |
| >COG0329 DapA Dihydrodipicolinate synthase/N-acetylneuraminate lyase [Amino acid transport and metabolism / Cell envelope biogenesis, outer membrane] | Back alignment and domain information |
|---|
Probab=85.78 E-value=35 Score=32.90 Aligned_cols=179 Identities=19% Similarity=0.221 Sum_probs=101.8
Q ss_pred CceEecccccccccCChhhHHHHHHHHHcCCceec--C---CCCCCCHHHHhc-------cCC--CceEEEeeecCCHHH
Q 017781 72 MPIMIAPTAMQKMAHPEGEYATARAASAAGTIMTL--S---SWSTSSVEEVAS-------TGP--GIRFFQLYVYKDRNV 137 (366)
Q Consensus 72 ~Pi~iApm~~~~l~~~~~e~~la~aa~~~G~~~~v--s---~~~~~~~e~i~~-------~~~--~~~~~Qly~~~d~~~ 137 (366)
.|.++.|+.-.+-...++-..+++-.-+.|+-.++ | +..+.+.||-.+ ... -|...+.. ..+.+.
T Consensus 9 i~a~vTPF~~dg~vD~~a~~~lv~~li~~Gv~gi~~~GttGE~~~Ls~eEr~~v~~~~v~~~~grvpviaG~g-~~~t~e 87 (299)
T COG0329 9 IPALVTPFDEDGSVDEEALRRLVEFLIAAGVDGLVVLGTTGESPTLTLEERKEVLEAVVEAVGGRVPVIAGVG-SNSTAE 87 (299)
T ss_pred eeccccCCCCCCCcCHHHHHHHHHHHHHcCCCEEEECCCCccchhcCHHHHHHHHHHHHHHHCCCCcEEEecC-CCcHHH
Confidence 56677787542324445556777777888866543 2 334567766432 222 34566654 345566
Q ss_pred HHHHHHHHHHcCCCEEEEecCCCCCcchhHHHhhhcCCCCccccccccccccCCCccccchhhHHHhhhccCCCCCHHHH
Q 017781 138 VAQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLTLKNFQGLDLGKMDEANDSGLAAYVAGQIDRSLSWKDV 217 (366)
Q Consensus 138 ~~~~l~ra~~~G~~ai~vtvd~p~~g~r~~d~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~i 217 (366)
..++.+.+++.|++++.+. +|.. + + ....-..+..
T Consensus 88 ai~lak~a~~~Gad~il~v--~PyY-~-----------k-------------------------------~~~~gl~~hf 122 (299)
T COG0329 88 AIELAKHAEKLGADGILVV--PPYY-N-----------K-------------------------------PSQEGLYAHF 122 (299)
T ss_pred HHHHHHHHHhcCCCEEEEe--CCCC-c-----------C-------------------------------CChHHHHHHH
Confidence 6788899999999999872 2211 0 0 0011123456
Q ss_pred HHHHHhcCCCEEEEecc-------CHHH-HHc-CCcEEE-EcCCCccCCCCCcchHHHHHHHHHHcCCCceEEEecCCCC
Q 017781 218 KWLQTITKLPILVKGVL-------TAED-VQA-GAAGII-VSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRR 287 (366)
Q Consensus 218 ~~lr~~~~~pv~vK~v~-------~~~d-~~a-Gad~I~-vs~~gg~~~~~~~~~~~~l~~i~~~~~~~i~vi~~GGI~~ 287 (366)
+++.+.+++|+++=.+. +++. .+. ....|+ +=. .-..+..+.++....+.+-=++.+|+
T Consensus 123 ~~ia~a~~lPvilYN~P~~tg~~l~~e~i~~la~~~nivgiKd--------~~gd~~~~~~~~~~~~~~~f~v~~G~--- 191 (299)
T COG0329 123 KAIAEAVDLPVILYNIPSRTGVDLSPETIARLAEHPNIVGVKD--------SSGDLDRLEEIIAALGDRDFIVLSGD--- 191 (299)
T ss_pred HHHHHhcCCCEEEEeCccccCCCCCHHHHHHHhcCCCEEEEEe--------CCcCHHHHHHHHHhcCccCeeEEeCc---
Confidence 77777788998888763 3333 111 011221 111 11255666666666533212455553
Q ss_pred HHHHHHHHHhCcCEEEecHH
Q 017781 288 GTDVFKALALGASGIFIGRP 307 (366)
Q Consensus 288 ~~dv~kalalGAd~V~igr~ 307 (366)
-+.++-++.+|++++.-+..
T Consensus 192 d~~~~~~~~~G~~G~is~~~ 211 (299)
T COG0329 192 DELALPALLLGADGVISVTA 211 (299)
T ss_pred hHHHHHHHhCCCCeEEeccc
Confidence 56678888899999988873
|
|
| >cd04722 TIM_phosphate_binding TIM barrel proteins share a structurally conserved phosphate binding motif and in general share an eight beta/alpha closed barrel structure | Back alignment and domain information |
|---|
Probab=85.73 E-value=14 Score=31.75 Aligned_cols=90 Identities=18% Similarity=0.152 Sum_probs=55.2
Q ss_pred HHHHHHHHhcCCCEEEEeccC-H-H-------H-HHcCCcEEEEcCCCccCCCCCcchHHHHHHHHHHcCCCceEEEecC
Q 017781 215 KDVKWLQTITKLPILVKGVLT-A-E-------D-VQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGG 284 (366)
Q Consensus 215 ~~i~~lr~~~~~pv~vK~v~~-~-~-------d-~~aGad~I~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~i~vi~~GG 284 (366)
+.++.+++..+.|+++....+ . + . .++|+|+|.+....+.. ..-..+.+.++++.+ .+++++..-.
T Consensus 47 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~d~v~l~~~~~~~---~~~~~~~~~~i~~~~-~~~~v~~~~~ 122 (200)
T cd04722 47 EVLKEVAAETDLPLGVQLAINDAAAAVDIAAAAARAAGADGVEIHGAVGYL---AREDLELIRELREAV-PDVKVVVKLS 122 (200)
T ss_pred cHHHHHHhhcCCcEEEEEccCCchhhhhHHHHHHHHcCCCEEEEeccCCcH---HHHHHHHHHHHHHhc-CCceEEEEEC
Confidence 456777777788988886521 1 1 2 78999999987643210 011345666666665 3577776654
Q ss_pred CCCHHHHHHHHHhCcCEEEecHHH
Q 017781 285 VRRGTDVFKALALGASGIFIGRPV 308 (366)
Q Consensus 285 I~~~~dv~kalalGAd~V~igr~~ 308 (366)
.....+...+...|+|.+.+...+
T Consensus 123 ~~~~~~~~~~~~~g~d~i~~~~~~ 146 (200)
T cd04722 123 PTGELAAAAAEEAGVDEVGLGNGG 146 (200)
T ss_pred CCCccchhhHHHcCCCEEEEcCCc
Confidence 433333222467899999998643
|
Specific for this family is the conserved phosphate binding site at the edges of strands 7 and 8. The phosphate comes either from the substrate, as in the case of inosine monophosphate dehydrogenase (IMPDH), or from ribulose-5-phosphate 3-epimerase (RPE) or from cofactors, like FMN. |
| >PLN02979 glycolate oxidase | Back alignment and domain information |
|---|
Probab=85.65 E-value=1.4 Score=43.65 Aligned_cols=44 Identities=25% Similarity=0.456 Sum_probs=38.0
Q ss_pred cchHHHHHHHHHHcCCCceEEEecCCCCHHHHHHHHHhCcCEEEecH
Q 017781 260 PATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFIGR 306 (366)
Q Consensus 260 ~~~~~~l~~i~~~~~~~i~vi~~GGI~~~~dv~kalalGAd~V~igr 306 (366)
..+|+.|..+++.- ++|||+ .||.+++|+.+++.+|+|+|.++.
T Consensus 209 ~ltW~dl~wlr~~~--~~Pviv-KgV~~~~dA~~a~~~Gvd~I~Vsn 252 (366)
T PLN02979 209 TLSWKDVQWLQTIT--KLPILV-KGVLTGEDARIAIQAGAAGIIVSN 252 (366)
T ss_pred CCCHHHHHHHHhcc--CCCEEe-ecCCCHHHHHHHHhcCCCEEEECC
Confidence 34788899898866 799998 568999999999999999999874
|
|
| >PRK05198 2-dehydro-3-deoxyphosphooctonate aldolase; Provisional | Back alignment and domain information |
|---|
Probab=85.65 E-value=6.1 Score=37.33 Aligned_cols=88 Identities=27% Similarity=0.330 Sum_probs=58.4
Q ss_pred HHHHHHHHHhcCCCEEEEec--cCHHH--------HHcCCcEEEEcCCCccCCCCC--cchHHHHHHHHHHcCCCceEEE
Q 017781 214 WKDVKWLQTITKLPILVKGV--LTAED--------VQAGAAGIIVSNHGARQLDYV--PATIMALEEVVKATQGRIPVFL 281 (366)
Q Consensus 214 ~~~i~~lr~~~~~pv~vK~v--~~~~d--------~~aGad~I~vs~~gg~~~~~~--~~~~~~l~~i~~~~~~~i~vi~ 281 (366)
.+.++++.+ ++.||.+|-. .++++ ...|-.-|++.-+|- ..... ...+..++.+++ . .+|||+
T Consensus 114 ~~LL~a~g~-t~kpV~lKrG~~~t~~e~~~aaeyi~~~Gn~~vilcERG~-tf~y~r~~~D~~~vp~~k~-~--~lPVi~ 188 (264)
T PRK05198 114 TDLLVAAAK-TGKVVNIKKGQFLAPWDMKNVVDKVREAGNDKIILCERGT-SFGYNNLVVDMRGLPIMRE-T--GAPVIF 188 (264)
T ss_pred HHHHHHHhc-cCCeEEecCCCcCCHHHHHHHHHHHHHcCCCeEEEEeCCC-CcCCCCeeechhhhHHHhh-C--CCCEEE
Confidence 455666655 5899999965 67776 778888888876664 22111 124556665554 3 489999
Q ss_pred e---------------cCCCCHH--HHHHHHHhCcCEEEecH
Q 017781 282 D---------------GGVRRGT--DVFKALALGASGIFIGR 306 (366)
Q Consensus 282 ~---------------GGI~~~~--dv~kalalGAd~V~igr 306 (366)
| ||-|.-- -...|+++|||++++-.
T Consensus 189 DpSHsvq~pg~~~~~s~G~r~~v~~la~AAvA~GadGl~iEv 230 (264)
T PRK05198 189 DATHSVQLPGGQGGSSGGQREFVPVLARAAVAVGVAGLFIET 230 (264)
T ss_pred eCCccccCCCCCCCCCCCcHHHHHHHHHHHHHcCCCEEEEEe
Confidence 7 4544422 23367889999999985
|
|
| >PTZ00411 transaldolase-like protein; Provisional | Back alignment and domain information |
|---|
Probab=85.61 E-value=7.5 Score=38.16 Aligned_cols=99 Identities=14% Similarity=0.268 Sum_probs=65.5
Q ss_pred CCHHHHHHHHHh--cCCCEEEEeccCHHH----HHcCCcEEEEcCCCccCCCC-------------CcchHHHHHHHHHH
Q 017781 212 LSWKDVKWLQTI--TKLPILVKGVLTAED----VQAGAAGIIVSNHGARQLDY-------------VPATIMALEEVVKA 272 (366)
Q Consensus 212 ~~~~~i~~lr~~--~~~pv~vK~v~~~~d----~~aGad~I~vs~~gg~~~~~-------------~~~~~~~l~~i~~~ 272 (366)
.+|+-++.++.. -++++-+=.+.+... .++|++.|... -||-.|| +.+....+.++.+.
T Consensus 145 aT~eGi~Aa~~L~~eGI~~N~TlvFS~~QA~aaaeAGa~~ISPf--VGRi~d~~~~~~~~~~~~~~~~~Gv~~v~~i~~~ 222 (333)
T PTZ00411 145 STWEGIQAAKALEKEGIHCNLTLLFSFAQAVACAQAGVTLISPF--VGRILDWYKKPEKAESYVGAQDPGVISVTKIYNY 222 (333)
T ss_pred CCHHHHHHHHHHHHCCCceeEeEecCHHHHHHHHHcCCCEEEee--cchHHHhcccccccccccccCCchHHHHHHHHHH
Confidence 367655444433 288999888999877 99999887642 2332222 33445566666654
Q ss_pred cC--CCceEEEecCCCCHHHHHHHHHhCcCEEEecHHHHHHhhh
Q 017781 273 TQ--GRIPVFLDGGVRRGTDVFKALALGASGIFIGRPVVYSLAA 314 (366)
Q Consensus 273 ~~--~~i~vi~~GGI~~~~dv~kalalGAd~V~igr~~l~~l~~ 314 (366)
.. +--..|....+|+..++.+ .+|+|.+-|.-.++..+..
T Consensus 223 ~k~~g~~T~Im~ASfRn~~qi~~--laG~D~lTi~p~ll~~L~~ 264 (333)
T PTZ00411 223 YKKHGYKTIVMGASFRNTGEILE--LAGCDKLTISPKLLEELAN 264 (333)
T ss_pred HHHcCCCeEEEecccCCHHHHHH--HHCCCEEeCCHHHHHHHHh
Confidence 42 2234555567999999997 3899999999888776643
|
|
| >PRK12309 transaldolase/EF-hand domain-containing protein; Provisional | Back alignment and domain information |
|---|
Probab=85.57 E-value=43 Score=33.72 Aligned_cols=96 Identities=14% Similarity=0.167 Sum_probs=62.2
Q ss_pred CCHHHHHHHHHh--cCCCEEEEeccCHHH----HHcCCcEEEEcCCCccCCC-----C--------CcchHHHHHHHHHH
Q 017781 212 LSWKDVKWLQTI--TKLPILVKGVLTAED----VQAGAAGIIVSNHGARQLD-----Y--------VPATIMALEEVVKA 272 (366)
Q Consensus 212 ~~~~~i~~lr~~--~~~pv~vK~v~~~~d----~~aGad~I~vs~~gg~~~~-----~--------~~~~~~~l~~i~~~ 272 (366)
.+|+-++.++.. -++++-+=.+.+... .++|++.|... -||-.+ . .-|....+.++.+.
T Consensus 139 aT~eGi~A~~~L~~~GI~~n~TlvFS~~QA~aaaeAGa~~ISPf--VgRi~dw~~~~~g~~~~~~~~dpGv~~v~~i~~~ 216 (391)
T PRK12309 139 STWEGIKAAEVLEKEGIHCNLTLLFGFHQAIACAEAGVTLISPF--VGRILDWYKKETGRDSYPGAEDPGVQSVTQIYNY 216 (391)
T ss_pred CCHHHHHHHHHHHHCCCceeeeeecCHHHHHHHHHcCCCEEEee--cchhhhhhhhccCCCccccccchHHHHHHHHHHH
Confidence 356554444432 288988888999877 99999877642 233222 1 12244556666554
Q ss_pred cC---CCceEEEecCCCCHHHHHHHHHhCcCEEEecHHHHHHh
Q 017781 273 TQ---GRIPVFLDGGVRRGTDVFKALALGASGIFIGRPVVYSL 312 (366)
Q Consensus 273 ~~---~~i~vi~~GGI~~~~dv~kalalGAd~V~igr~~l~~l 312 (366)
.. .+..|++ ..+|+..++.+ .+|+|.+-|.-.++..+
T Consensus 217 ~~~~~~~T~Im~-ASfRn~~~v~~--laG~d~~Ti~p~ll~~L 256 (391)
T PRK12309 217 YKKFGYKTEVMG-ASFRNIGEIIE--LAGCDLLTISPKLLEQL 256 (391)
T ss_pred HHhcCCCcEEEe-cccCCHHHHHH--HHCCCeeeCCHHHHHHH
Confidence 42 2444555 45999999997 48999999998776654
|
|
| >PF00701 DHDPS: Dihydrodipicolinate synthetase family; InterPro: IPR002220 Dihydropicolinate synthase (DHDPS) is the key enzyme in lysine biosynthesis via the diaminopimelate pathway of prokaryotes, some phycomycetes and higher plants | Back alignment and domain information |
|---|
Probab=85.57 E-value=34 Score=32.52 Aligned_cols=177 Identities=20% Similarity=0.198 Sum_probs=93.1
Q ss_pred ceEecccccccccCChhhHHHHHHHHHcCCceec--C---CCCCCCHHHHhc-------cCC--CceEEEeeecCCHHHH
Q 017781 73 PIMIAPTAMQKMAHPEGEYATARAASAAGTIMTL--S---SWSTSSVEEVAS-------TGP--GIRFFQLYVYKDRNVV 138 (366)
Q Consensus 73 Pi~iApm~~~~l~~~~~e~~la~aa~~~G~~~~v--s---~~~~~~~e~i~~-------~~~--~~~~~Qly~~~d~~~~ 138 (366)
|.++.|+.-..-.+.++-..+++-.-+.|+...+ + ++.+.+.+|..+ ..+ .+.+.++- ..+.+.+
T Consensus 7 ~~~~TPf~~dg~id~~~~~~~i~~l~~~Gv~gl~~~GstGE~~~Lt~~Er~~l~~~~~~~~~~~~~vi~gv~-~~st~~~ 85 (289)
T PF00701_consen 7 PALITPFNADGSIDEDALKRLIDFLIEAGVDGLVVLGSTGEFYSLTDEERKELLEIVVEAAAGRVPVIAGVG-ANSTEEA 85 (289)
T ss_dssp EEE---BETTSSB-HHHHHHHHHHHHHTTSSEEEESSTTTTGGGS-HHHHHHHHHHHHHHHTTSSEEEEEEE-SSSHHHH
T ss_pred eeeeCCCCCCcCcCHHHHHHHHHHHHHcCCCEEEECCCCcccccCCHHHHHHHHHHHHHHccCceEEEecCc-chhHHHH
Confidence 4556666432222233345777777788876543 2 233456655422 222 35666654 3467777
Q ss_pred HHHHHHHHHcCCCEEEEecCCCCCcchhHHHhhhcCCCCccccccccccccCCCccccchhhHHHhhhccCCCCCHHHHH
Q 017781 139 AQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLTLKNFQGLDLGKMDEANDSGLAAYVAGQIDRSLSWKDVK 218 (366)
Q Consensus 139 ~~~l~ra~~~G~~ai~vtvd~p~~g~r~~d~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~i~ 218 (366)
.++++.++++|++++.+.. |... + .+..-..+..+
T Consensus 86 i~~a~~a~~~Gad~v~v~~--P~~~------------~-------------------------------~s~~~l~~y~~ 120 (289)
T PF00701_consen 86 IELARHAQDAGADAVLVIP--PYYF------------K-------------------------------PSQEELIDYFR 120 (289)
T ss_dssp HHHHHHHHHTT-SEEEEEE--STSS------------S-------------------------------CCHHHHHHHHH
T ss_pred HHHHHHHhhcCceEEEEec--cccc------------c-------------------------------chhhHHHHHHH
Confidence 8889999999999998742 2210 0 00000123455
Q ss_pred HHHHhcCCCEEEEecc-------CHHH----HHc-CCcEEEEcCCCccCCCCCcchHHHHHHHHHHcCCCceEEEecCCC
Q 017781 219 WLQTITKLPILVKGVL-------TAED----VQA-GAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVR 286 (366)
Q Consensus 219 ~lr~~~~~pv~vK~v~-------~~~d----~~a-Gad~I~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~i~vi~~GGI~ 286 (366)
.+.+.+++|+++=... +++. .+. .+-+|..+. ..+..+.++.+...+++.|+ +|
T Consensus 121 ~ia~~~~~pi~iYn~P~~tg~~ls~~~l~~L~~~~nv~giK~s~----------~~~~~~~~~~~~~~~~~~v~-~G--- 186 (289)
T PF00701_consen 121 AIADATDLPIIIYNNPARTGNDLSPETLARLAKIPNVVGIKDSS----------GDLERLIQLLRAVGPDFSVF-CG--- 186 (289)
T ss_dssp HHHHHSSSEEEEEEBHHHHSSTSHHHHHHHHHTSTTEEEEEESS----------SBHHHHHHHHHHSSTTSEEE-ES---
T ss_pred HHHhhcCCCEEEEECCCccccCCCHHHHHHHhcCCcEEEEEcCc----------hhHHHHHHHhhhcccCeeee-cc---
Confidence 5566667787776542 2222 221 111222211 13344555666655566544 45
Q ss_pred CHHHHHHHHHhCcCEEEecHHHH
Q 017781 287 RGTDVFKALALGASGIFIGRPVV 309 (366)
Q Consensus 287 ~~~dv~kalalGAd~V~igr~~l 309 (366)
....+..++.+|+++++.+.+-+
T Consensus 187 ~d~~~~~~l~~G~~G~is~~~n~ 209 (289)
T PF00701_consen 187 DDELLLPALAAGADGFISGLANV 209 (289)
T ss_dssp SGGGHHHHHHTTSSEEEESGGGT
T ss_pred ccccccccccccCCEEEEccccc
Confidence 45568899999999999887643
|
The enzyme catalyses the condensation of L-aspartate-beta- semialdehyde and pyruvate to dihydropicolinic acid via a ping-pong mechanism in which pyruvate binds to the enzyme by forming a Schiff-base with a lysine residue []. Three other proteins are structurally related to DHDPS and probably also act via a similar catalytic mechanism. These are Escherichia coli N-acetylneuraminate lyase (4.1.3.3 from EC) (gene nanA), which catalyzes the condensation of N-acetyl-D-mannosamine and pyruvate to form N-acetylneuraminate; Rhizobium meliloti (Sinorhizobium meliloti) protein mosA [], which is involved in the biosynthesis of the rhizopine 3-o-methyl-scyllo-inosamine; and E. coli hypothetical protein yjhH. The sequences of DHDPS from different sources are well-conserved. The structure takes the form of a homotetramer, in which 2 monomers are related by an approximate 2-fold symmetry []. Each monomer comprises 2 domains: an 8-fold alpha-/beta-barrel, and a C-terminal alpha-helical domain. The fold resembles that of N-acetylneuraminate lyase. The active site lysine is located in the barrel domain, and has access via 2 channels on the C-terminal side of the barrel.; GO: 0016829 lyase activity, 0008152 metabolic process; PDB: 3B4U_B 3S8H_A 3QZE_B 1XXX_F 3L21_F 3IRD_A 3A5F_B 3G0S_B 3DAQ_C 3UQN_A .... |
| >TIGR01037 pyrD_sub1_fam dihydroorotate dehydrogenase (subfamily 1) family protein | Back alignment and domain information |
|---|
Probab=85.49 E-value=3.6 Score=39.44 Aligned_cols=37 Identities=27% Similarity=0.418 Sum_probs=29.8
Q ss_pred CHHHHHHHHHhcCCCEEEE-eccCHHH----HHcCCcEEEEc
Q 017781 213 SWKDVKWLQTITKLPILVK-GVLTAED----VQAGAAGIIVS 249 (366)
Q Consensus 213 ~~~~i~~lr~~~~~pv~vK-~v~~~~d----~~aGad~I~vs 249 (366)
.++.+.++++..++||+.= ++.+++| .++|||+|.+.
T Consensus 222 ~l~~v~~i~~~~~ipvi~~GGI~s~~da~~~l~~GAd~V~ig 263 (300)
T TIGR01037 222 ALRMVYDVYKMVDIPIIGVGGITSFEDALEFLMAGASAVQVG 263 (300)
T ss_pred HHHHHHHHHhcCCCCEEEECCCCCHHHHHHHHHcCCCceeec
Confidence 4577889999889998865 5678887 77999999763
|
This family includes subfamily 1 dihydroorotate dehydrogenases while excluding the closely related subfamily 2 (TIGR01036). This family also includes a number of uncharacterized proteins and a domain of dihydropyrimidine dehydrogenase. The uncharacterized proteins might all be dihydroorotate dehydrogenase. |
| >COG0269 SgbH 3-hexulose-6-phosphate synthase and related proteins [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=85.21 E-value=17 Score=33.39 Aligned_cols=87 Identities=28% Similarity=0.244 Sum_probs=58.3
Q ss_pred HHHHHHHHHhcCCCEEEEeccCHHH--------HHcCCcEEEEcCCCccCCCCCcchHHHHHHHHHHcCCCceEEEec-C
Q 017781 214 WKDVKWLQTITKLPILVKGVLTAED--------VQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDG-G 284 (366)
Q Consensus 214 ~~~i~~lr~~~~~pv~vK~v~~~~d--------~~aGad~I~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~i~vi~~G-G 284 (366)
.+.|+.+|+.++-.++|-..-+.+. .++|||+++|++.. -.+|+....+.++.. .+.+.++= |
T Consensus 44 ~~aV~~lr~~~pd~~IvAD~Kt~D~G~~e~~ma~~aGAd~~tV~g~A------~~~TI~~~i~~A~~~--~~~v~iDl~~ 115 (217)
T COG0269 44 MRAVRALRELFPDKIIVADLKTADAGAIEARMAFEAGADWVTVLGAA------DDATIKKAIKVAKEY--GKEVQIDLIG 115 (217)
T ss_pred HHHHHHHHHHCCCCeEEeeeeecchhHHHHHHHHHcCCCEEEEEecC------CHHHHHHHHHHHHHc--CCeEEEEeec
Confidence 4678899998855556554433221 99999999998732 224544333344444 34444443 6
Q ss_pred CCCHHHHHHHHH-hCcCEEEecHHH
Q 017781 285 VRRGTDVFKALA-LGASGIFIGRPV 308 (366)
Q Consensus 285 I~~~~dv~kala-lGAd~V~igr~~ 308 (366)
..++.+..+=+. +|.|.+.+=|..
T Consensus 116 ~~~~~~~~~~l~~~gvd~~~~H~g~ 140 (217)
T COG0269 116 VWDPEQRAKWLKELGVDQVILHRGR 140 (217)
T ss_pred CCCHHHHHHHHHHhCCCEEEEEecc
Confidence 999999999999 999999887654
|
|
| >KOG2550 consensus IMP dehydrogenase/GMP reductase [Nucleotide transport and metabolism] | Back alignment and domain information |
|---|
Probab=85.15 E-value=2.6 Score=42.12 Aligned_cols=61 Identities=20% Similarity=0.319 Sum_probs=48.0
Q ss_pred HHcCCcEEEEcCCCccCCCCCcchHHHHHHHHHHcCCCceEEEecCCCCHHHHHHHHHhCcCEEEec
Q 017781 239 VQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFIG 305 (366)
Q Consensus 239 ~~aGad~I~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~i~vi~~GGI~~~~dv~kalalGAd~V~ig 305 (366)
.++|+|.|++.-.-|. ..-.++.++.+++..+ +++||+ |-+-|.+.+...++.|||.+=||
T Consensus 260 ~~aGvdvviLDSSqGn----S~~qiemik~iK~~yP-~l~Via-GNVVT~~qa~nLI~aGaDgLrVG 320 (503)
T KOG2550|consen 260 VQAGVDVVILDSSQGN----SIYQLEMIKYIKETYP-DLQIIA-GNVVTKEQAANLIAAGADGLRVG 320 (503)
T ss_pred hhcCCcEEEEecCCCc----chhHHHHHHHHHhhCC-Cceeec-cceeeHHHHHHHHHccCceeEec
Confidence 8999999998765442 2235677888877664 678887 88999999999999999986655
|
|
| >cd03332 LMO_FMN L-Lactate 2-monooxygenase (LMO) FMN-binding domain | Back alignment and domain information |
|---|
Probab=85.11 E-value=1.6 Score=43.62 Aligned_cols=42 Identities=24% Similarity=0.393 Sum_probs=37.5
Q ss_pred chHHHHHHHHHHcCCCceEEEecCCCCHHHHHHHHHhCcCEEEec
Q 017781 261 ATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFIG 305 (366)
Q Consensus 261 ~~~~~l~~i~~~~~~~i~vi~~GGI~~~~dv~kalalGAd~V~ig 305 (366)
.+|+.|.++++.. ++||++- ||.+.+|+.+++.+|+|+|.+.
T Consensus 240 ~tW~~i~~lr~~~--~~pvivK-gV~~~~dA~~a~~~G~d~I~vs 281 (383)
T cd03332 240 LTWEDLAFLREWT--DLPIVLK-GILHPDDARRAVEAGVDGVVVS 281 (383)
T ss_pred CCHHHHHHHHHhc--CCCEEEe-cCCCHHHHHHHHHCCCCEEEEc
Confidence 4788999999877 7899885 7999999999999999999986
|
LMO is a FMN-containing enzyme that catalyzes the conversion of L-lactate and oxygen to acetate, carbon dioxide, and water. LMO is a member of the family of alpha-hydroxy acid oxidases. It is thought to be a homooctamer with two- and four- fold axes in the center of the octamer. |
| >PRK11197 lldD L-lactate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=85.09 E-value=1.6 Score=43.72 Aligned_cols=43 Identities=23% Similarity=0.309 Sum_probs=37.8
Q ss_pred chHHHHHHHHHHcCCCceEEEecCCCCHHHHHHHHHhCcCEEEecH
Q 017781 261 ATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFIGR 306 (366)
Q Consensus 261 ~~~~~l~~i~~~~~~~i~vi~~GGI~~~~dv~kalalGAd~V~igr 306 (366)
.+|+.|.++++.. ++|||+ .||-+.+|+.+++.+|+|+|.++.
T Consensus 232 ltW~di~~lr~~~--~~pviv-KgV~s~~dA~~a~~~Gvd~I~Vs~ 274 (381)
T PRK11197 232 ISWKDLEWIRDFW--DGPMVI-KGILDPEDARDAVRFGADGIVVSN 274 (381)
T ss_pred CCHHHHHHHHHhC--CCCEEE-EecCCHHHHHHHHhCCCCEEEECC
Confidence 4788899999887 789888 669999999999999999998763
|
|
| >cd02801 DUS_like_FMN Dihydrouridine synthase-like (DUS-like) FMN-binding domain | Back alignment and domain information |
|---|
Probab=85.08 E-value=8.4 Score=35.06 Aligned_cols=38 Identities=18% Similarity=0.615 Sum_probs=30.5
Q ss_pred CCHHHHHHHHHhcCCCEEEEec-cCHHH----HHc-CCcEEEEc
Q 017781 212 LSWKDVKWLQTITKLPILVKGV-LTAED----VQA-GAAGIIVS 249 (366)
Q Consensus 212 ~~~~~i~~lr~~~~~pv~vK~v-~~~~d----~~a-Gad~I~vs 249 (366)
..|+.++.+++..++||+.=|. .+.++ .+. |+|+|.+.
T Consensus 170 ~~~~~~~~i~~~~~ipvi~~Ggi~~~~d~~~~l~~~gad~V~ig 213 (231)
T cd02801 170 ADWDYIAEIKEAVSIPVIANGDIFSLEDALRCLEQTGVDGVMIG 213 (231)
T ss_pred CCHHHHHHHHhCCCCeEEEeCCCCCHHHHHHHHHhcCCCEEEEc
Confidence 4788899999999999998764 57777 555 89999763
|
Members of this family catalyze the reduction of the 5,6-double bond of a uridine residue on tRNA. Dihydrouridine modification of tRNA is widely observed in prokaryotes and eukaryotes, and also in some archaea. Most dihydrouridines are found in the D loop of t-RNAs. The role of dihydrouridine in tRNA is currently unknown, but may increase conformational flexibility of the tRNA. It is likely that different family members have different substrate specificities, which may overlap. 1VHN, a putative flavin oxidoreductase, has high sequence similarity to DUS. The enzymatic mechanism of 1VHN is not known at the present. |
| >cd00957 Transaldolase_TalAB Transaldolases including both TalA and TalB | Back alignment and domain information |
|---|
Probab=84.99 E-value=7.1 Score=38.02 Aligned_cols=97 Identities=12% Similarity=0.204 Sum_probs=64.4
Q ss_pred CCHHHHHHHHHhc--CCCEEEEeccCHHH----HHcCCcEEEEcCCCccCCCC-------------CcchHHHHHHHHHH
Q 017781 212 LSWKDVKWLQTIT--KLPILVKGVLTAED----VQAGAAGIIVSNHGARQLDY-------------VPATIMALEEVVKA 272 (366)
Q Consensus 212 ~~~~~i~~lr~~~--~~pv~vK~v~~~~d----~~aGad~I~vs~~gg~~~~~-------------~~~~~~~l~~i~~~ 272 (366)
.+|+-++.++... ++++-+-.+.+.+. .++|++.|.. .-||-.|| .-+.+..+.++.+.
T Consensus 133 aT~eGi~A~~~L~~~GI~vn~TlvFS~~Qa~~aa~AGa~~ISP--fVgRi~d~~~~~~~~~~~~~~~d~Gv~~v~~i~~~ 210 (313)
T cd00957 133 ATWEGIQAAKQLEKEGIHCNLTLLFSFAQAVACAEAGVTLISP--FVGRILDWYKKHSGDKAYTAEEDPGVASVKKIYNY 210 (313)
T ss_pred CCHHHHHHHHHHHHCCCceeeeeecCHHHHHHHHHcCCCEEEe--ecchHHHhhhhccccccCCccCCcHHHHHHHHHHH
Confidence 4666555444332 88999989999877 9999987763 22332222 12345556666554
Q ss_pred c---CCCceEEEecCCCCHHHHHHHHHhCcCEEEecHHHHHHhh
Q 017781 273 T---QGRIPVFLDGGVRRGTDVFKALALGASGIFIGRPVVYSLA 313 (366)
Q Consensus 273 ~---~~~i~vi~~GGI~~~~dv~kalalGAd~V~igr~~l~~l~ 313 (366)
. +.+..|+ ...+|+..++.+ .+|+|.+-+.-.++..|.
T Consensus 211 ~~~~~~~T~vm-aASfRn~~~v~~--laG~d~~Ti~p~ll~~L~ 251 (313)
T cd00957 211 YKKFGYKTKVM-GASFRNIGQILA--LAGCDYLTISPALLEELK 251 (313)
T ss_pred HHHcCCCcEEE-ecccCCHHHHHH--HhCCCeEEcCHHHHHHHH
Confidence 4 2244455 456999999997 579999999988887764
|
The enzyme catalyses the reversible transfer of a dyhydroxyacetone moiety, derived from fructose-6-phosphate to erythrose-4-phosphate yielding sedoheptulose-7-phosphate and glyceraldehyde-3-phosphate. The catalytic mechanism is similar to other class I aldolases. The enzyme is found in the non-oxidative branch of the pentose phosphate pathway and forms a dimer in solution. |
| >PRK09250 fructose-bisphosphate aldolase; Provisional | Back alignment and domain information |
|---|
Probab=84.97 E-value=4.9 Score=39.58 Aligned_cols=71 Identities=17% Similarity=0.158 Sum_probs=40.2
Q ss_pred cCHHH-HHcCCcEEEEcCCCccCCCCCcchHHHHHHHHHHcC-CCceEEE----ec-CCCCHH------HHH-----HHH
Q 017781 234 LTAED-VQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQ-GRIPVFL----DG-GVRRGT------DVF-----KAL 295 (366)
Q Consensus 234 ~~~~d-~~aGad~I~vs~~gg~~~~~~~~~~~~l~~i~~~~~-~~i~vi~----~G-GI~~~~------dv~-----kal 295 (366)
.++++ .+.|||+|.++-.-|.. .....++.+.++.+... -.+|+++ -| .|.+.. |.+ -+.
T Consensus 150 ~sVedAlrLGAdAV~~tvy~Gs~--~E~~ml~~l~~i~~ea~~~GlPlv~~~YpRG~~i~~~~d~~~~~d~Ia~AaRiaa 227 (348)
T PRK09250 150 ASVEDALRLGAVAVGATIYFGSE--ESRRQIEEISEAFEEAHELGLATVLWSYLRNSAFKKDGDYHTAADLTGQANHLAA 227 (348)
T ss_pred ecHHHHHHCCCCEEEEEEecCCH--HHHHHHHHHHHHHHHHHHhCCCEEEEecccCcccCCcccccccHHHHHHHHHHHH
Confidence 36777 99999999987654411 11223444444444332 2688776 22 233332 333 344
Q ss_pred HhCcCEEEecH
Q 017781 296 ALGASGIFIGR 306 (366)
Q Consensus 296 alGAd~V~igr 306 (366)
++|||.|=+--
T Consensus 228 ELGADIVKv~y 238 (348)
T PRK09250 228 TIGADIIKQKL 238 (348)
T ss_pred HHcCCEEEecC
Confidence 58999997653
|
|
| >PRK06512 thiamine-phosphate pyrophosphorylase; Provisional | Back alignment and domain information |
|---|
Probab=84.78 E-value=6.1 Score=36.40 Aligned_cols=79 Identities=16% Similarity=0.179 Sum_probs=51.8
Q ss_pred HHHHHHHHhcCCCEEEEeccCHHH-HHcCCcEEEEcCCCccCCCCCcchHHHHHHHHHHcCCCceEEEecCCCCHHHHHH
Q 017781 215 KDVKWLQTITKLPILVKGVLTAED-VQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFK 293 (366)
Q Consensus 215 ~~i~~lr~~~~~pv~vK~v~~~~d-~~aGad~I~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~i~vi~~GGI~~~~dv~k 293 (366)
+.+..+.+.+++|++|-. +++- .+.|+|+|.+...- . .+.++++.++ .--+|+.+-.++-.++.+
T Consensus 61 ~~l~~l~~~~gv~liINd--~~dlA~~~~adGVHLg~~d--------~---~~~~~r~~~~-~~~iiG~s~~~s~~~a~~ 126 (221)
T PRK06512 61 EKLVPVIQEAGAAALIAG--DSRIAGRVKADGLHIEGNL--------A---ALAEAIEKHA-PKMIVGFGNLRDRHGAME 126 (221)
T ss_pred HHHHHHHHHhCCEEEEeC--HHHHHHHhCCCEEEECccc--------c---CHHHHHHhcC-CCCEEEecCCCCHHHHHH
Confidence 345666666788988753 1222 88999999774321 0 1345555543 223555455678888999
Q ss_pred HHHhCcCEEEecHH
Q 017781 294 ALALGASGIFIGRP 307 (366)
Q Consensus 294 alalGAd~V~igr~ 307 (366)
|..+|||.|.+|--
T Consensus 127 A~~~gaDYv~~Gpv 140 (221)
T PRK06512 127 IGELRPDYLFFGKL 140 (221)
T ss_pred hhhcCCCEEEECCC
Confidence 99999999999953
|
|
| >PRK11320 prpB 2-methylisocitrate lyase; Provisional | Back alignment and domain information |
|---|
Probab=84.76 E-value=4.3 Score=39.13 Aligned_cols=78 Identities=22% Similarity=0.393 Sum_probs=52.0
Q ss_pred CCCEEEEeccCHHH----HHcCCcEEEEcCCCc--c---CCCCCcchH----HHHHHHHHHcCCCceEEEec--CCCCHH
Q 017781 225 KLPILVKGVLTAED----VQAGAAGIIVSNHGA--R---QLDYVPATI----MALEEVVKATQGRIPVFLDG--GVRRGT 289 (366)
Q Consensus 225 ~~pv~vK~v~~~~d----~~aGad~I~vs~~gg--~---~~~~~~~~~----~~l~~i~~~~~~~i~vi~~G--GI~~~~ 289 (366)
+.|+++=++.+.-. .++|.++|.+|+++= . ..|.+.-++ +.+.+|.+.+ ++||++|. |..++.
T Consensus 16 ~~~l~~p~~~Da~SAri~e~~Gf~ai~~Sg~~~a~~~lG~PD~g~l~~~e~~~~~~~I~~~~--~iPviaD~d~GyG~~~ 93 (292)
T PRK11320 16 EKPLQIVGTINAYHALLAERAGFKAIYLSGGGVAAASLGLPDLGITTLDDVLIDVRRITDAC--DLPLLVDIDTGFGGAF 93 (292)
T ss_pred CCcEEecCCCCHHHHHHHHHcCCCEEEeCHHHHHhHhcCCCCCCCCCHHHHHHHHHHHHhcc--CCCEEEECCCCCCCHH
Confidence 45777766655544 899999999987541 1 134444343 3344455555 79999986 777888
Q ss_pred HH---H-HHHHhCcCEEEe
Q 017781 290 DV---F-KALALGASGIFI 304 (366)
Q Consensus 290 dv---~-kalalGAd~V~i 304 (366)
.+ + +....||.++.|
T Consensus 94 ~v~r~V~~~~~aGaagi~I 112 (292)
T PRK11320 94 NIARTVKSMIKAGAAAVHI 112 (292)
T ss_pred HHHHHHHHHHHcCCeEEEE
Confidence 86 3 444589988888
|
|
| >COG1954 GlpP Glycerol-3-phosphate responsive antiterminator (mRNA-binding) [Transcription] | Back alignment and domain information |
|---|
Probab=84.72 E-value=1.8 Score=38.17 Aligned_cols=141 Identities=18% Similarity=0.227 Sum_probs=84.0
Q ss_pred ceEEEeeecCCHHHHHHHHHHHHHcCCCEEEEecCCCCCcchhHHHhhhcCCCCccccccccccccCCCccccchhhHHH
Q 017781 124 IRFFQLYVYKDRNVVAQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLTLKNFQGLDLGKMDEANDSGLAAY 203 (366)
Q Consensus 124 ~~~~Qly~~~d~~~~~~~l~ra~~~G~~ai~vtvd~p~~g~r~~d~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~ 203 (366)
.+.|-|+ .+-..+.+.++.+++.| +.+.+++|. .+|..- ..-..++
T Consensus 25 ~~vflL~--~~i~~ik~ivk~lK~~g-K~vfiHvDL----------v~Gl~~---------------------~e~~i~f 70 (181)
T COG1954 25 QYVFLLT--GHILNIKEIVKKLKNRG-KTVFIHVDL----------VEGLSN---------------------DEVAIEF 70 (181)
T ss_pred eEEEEEe--chhhhHHHHHHHHHhCC-cEEEEEeHH----------hcccCC---------------------chHHHHH
Confidence 3555555 45666777888887776 455678873 333210 0011122
Q ss_pred hhhcc--CCCCCH--HHHHHHHHhcCCCEEEEec----cCHHH-----HHcCCcEEEEcCCCccCCCCCcchHHHHHHHH
Q 017781 204 VAGQI--DRSLSW--KDVKWLQTITKLPILVKGV----LTAED-----VQAGAAGIIVSNHGARQLDYVPATIMALEEVV 270 (366)
Q Consensus 204 ~~~~~--d~~~~~--~~i~~lr~~~~~pv~vK~v----~~~~d-----~~aGad~I~vs~~gg~~~~~~~~~~~~l~~i~ 270 (366)
+.... |+-.+. ..+...|+. +++.+-..- ...+. .+.++|+|-+-- + -....+.++.
T Consensus 71 i~~~~~pdGIISTk~~~i~~Akk~-~~~aIqR~FilDS~Al~~~~~~i~~~~pD~iEvLP-------G--v~Pkvi~~i~ 140 (181)
T COG1954 71 IKEVIKPDGIISTKSNVIKKAKKL-GILAIQRLFILDSIALEKGIKQIEKSEPDFIEVLP-------G--VMPKVIKEIT 140 (181)
T ss_pred HHHhccCCeeEEccHHHHHHHHHc-CCceeeeeeeecHHHHHHHHHHHHHcCCCEEEEcC-------c--ccHHHHHHHH
Confidence 22222 222222 345555553 566555532 12222 778999997622 2 1335666776
Q ss_pred HHcCCCceEEEecCCCCHHHHHHHHHhCcCEEEecHHHHH
Q 017781 271 KATQGRIPVFLDGGVRRGTDVFKALALGASGIFIGRPVVY 310 (366)
Q Consensus 271 ~~~~~~i~vi~~GGI~~~~dv~kalalGAd~V~igr~~l~ 310 (366)
+.. .+|||+-|=|++-+|+..||..||-+|.-..--+|
T Consensus 141 ~~t--~~piIAGGLi~t~Eev~~Al~aGA~avSTs~~~lW 178 (181)
T COG1954 141 EKT--HIPIIAGGLIETEEEVREALKAGAVAVSTSNTKLW 178 (181)
T ss_pred Hhc--CCCEEeccccccHHHHHHHHHhCcEEEeecchhhc
Confidence 666 79999999999999999999999999876544444
|
|
| >PRK00278 trpC indole-3-glycerol-phosphate synthase; Reviewed | Back alignment and domain information |
|---|
Probab=84.72 E-value=3.7 Score=38.80 Aligned_cols=64 Identities=20% Similarity=0.261 Sum_probs=49.7
Q ss_pred HHcCCcEEEEcCCCccCCCCCcchHHHHHHHHHHcCCCceEEEecCCCCHHHHHHHHHhCcCEEEecHHH
Q 017781 239 VQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFIGRPV 308 (366)
Q Consensus 239 ~~aGad~I~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~i~vi~~GGI~~~~dv~kalalGAd~V~igr~~ 308 (366)
.++||++|.|..... .-...++.|..+++.+ ++||+.--=|..+.++..+..+|||+|.+.-..
T Consensus 80 ~~~GA~aisvlte~~----~f~g~~~~l~~v~~~v--~iPvl~kdfi~~~~qi~~a~~~GAD~VlLi~~~ 143 (260)
T PRK00278 80 EAGGAACLSVLTDER----FFQGSLEYLRAARAAV--SLPVLRKDFIIDPYQIYEARAAGADAILLIVAA 143 (260)
T ss_pred HhCCCeEEEEecccc----cCCCCHHHHHHHHHhc--CCCEEeeeecCCHHHHHHHHHcCCCEEEEEecc
Confidence 789999998754221 0112367888888887 899998777888999999999999999988544
|
|
| >cd08205 RuBisCO_IV_RLP Ribulose bisphosphate carboxylase like proteins, Rubisco-Form IV | Back alignment and domain information |
|---|
Probab=84.60 E-value=8.8 Score=38.22 Aligned_cols=101 Identities=19% Similarity=0.158 Sum_probs=59.1
Q ss_pred CCCCCHHHHHHHHHhcCCCEEEEec-----cCHHH--------HHcCCcEEEEcCCCccCCCCCcc-hHHHHHHHHHHcC
Q 017781 209 DRSLSWKDVKWLQTITKLPILVKGV-----LTAED--------VQAGAAGIIVSNHGARQLDYVPA-TIMALEEVVKATQ 274 (366)
Q Consensus 209 d~~~~~~~i~~lr~~~~~pv~vK~v-----~~~~d--------~~aGad~I~vs~~gg~~~~~~~~-~~~~l~~i~~~~~ 274 (366)
-|.+..+-++++....+.|++.-.+ ++++. .+.|+|+|...+..|.+...... ...++.++.+...
T Consensus 113 GP~fGi~g~R~~~gv~~rPli~Ti~kp~~gld~~~la~~~~~l~~gGvD~Ikdde~~ge~~~~~~eER~~~v~~av~~a~ 192 (367)
T cd08205 113 GPRFGIEGLRRLLGVHDRPLLGTIIKPSIGLSPEELAELAYELALGGIDLIKDDELLADQPYAPFEERVRACMEAVRRAN 192 (367)
T ss_pred CCCCCchhHHHHhCCCCCCeeeeeeCCCCCCCHHHHHHHHHHHHhcCCCeeeccccccCcccCCHHHHHHHHHHHHHHHH
Confidence 3566777788888877888765432 44443 88999999877665544322211 2233334433332
Q ss_pred ---CC-ceEEEecCCCCHHHHH----HHHHhCcCEEEecHHHHH
Q 017781 275 ---GR-IPVFLDGGVRRGTDVF----KALALGASGIFIGRPVVY 310 (366)
Q Consensus 275 ---~~-i~vi~~GGI~~~~dv~----kalalGAd~V~igr~~l~ 310 (366)
++ .+++++.. .+..++. .+..+|||+||+--++.+
T Consensus 193 ~~TG~~~~y~~nit-~~~~e~i~~a~~a~~~Gad~vmv~~~~~g 235 (367)
T cd08205 193 EETGRKTLYAPNIT-GDPDELRRRADRAVEAGANALLINPNLVG 235 (367)
T ss_pred HhhCCcceEEEEcC-CCHHHHHHHHHHHHHcCCCEEEEeccccc
Confidence 33 33343332 3335553 345589999999987643
|
Ribulose bisphosphate carboxylase (Rubisco) plays an important role in the Calvin reductive pentose phosphate pathway. It catalyzes the primary CO2 fixation step. Rubisco is activated by carbamylation of an active site lysine, stabilized by a divalent cation, which then catalyzes the proton abstraction from the substrate ribulose 1,5 bisphosphate (RuBP) and leads to the formation of two molecules of 3-phosphoglycerate. Members of the Rubisco family can be divided into 4 subgroups, Form I-IV, which differ in their taxonomic distribution and subunit composition. Form I-III have Rubisco activity, while Form IV, also called Rubisco-like proteins (RLP), are missing critical active site residues and therefore do not catalyze CO2 fixation. They are believed to utilize a related enzymatic mechanism, but have divergent functions, like for example 2,3-diketo-5-methylthiopentyl-1-phosphate enolase or 5-methyl |
| >COG0502 BioB Biotin synthase and related enzymes [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=84.35 E-value=17 Score=35.75 Aligned_cols=174 Identities=17% Similarity=0.185 Sum_probs=95.4
Q ss_pred hHHHHHHHHHcC-CceecCCC-CC--CCHHHHhccCC---CceEEEeeecCCHHHHHHHHHHHHHcCCCEEEEecCCCCC
Q 017781 90 EYATARAASAAG-TIMTLSSW-ST--SSVEEVASTGP---GIRFFQLYVYKDRNVVAQLVRRAERAGFKAIALTVDTPRL 162 (366)
Q Consensus 90 e~~la~aa~~~G-~~~~vs~~-~~--~~~e~i~~~~~---~~~~~Qly~~~d~~~~~~~l~ra~~~G~~ai~vtvd~p~~ 162 (366)
=++.|+.|++.| ..+++.+. -. ..++++.+... ......+...-. ....+.+++++++|.+...-++++..
T Consensus 89 Ile~Ak~ak~~Ga~r~c~~aagr~~~~~~~~i~~~v~~Vk~~~~le~c~slG-~l~~eq~~~L~~aGvd~ynhNLeTs~- 166 (335)
T COG0502 89 ILEAAKKAKAAGATRFCMGAAGRGPGRDMEEVVEAIKAVKEELGLEVCASLG-MLTEEQAEKLADAGVDRYNHNLETSP- 166 (335)
T ss_pred HHHHHHHHHHcCCceEEEEEeccCCCccHHHHHHHHHHHHHhcCcHHhhccC-CCCHHHHHHHHHcChhheecccccCH-
Confidence 358999999999 78876433 22 44455443221 001111111101 23345667788889888877777521
Q ss_pred cchhHHHhhhcCCCCccccccccccccCCCccccchhhHHHhhhccCCCCCHHH----HHHHHHhcCCCEEEEec----c
Q 017781 163 GRREADIKNRFTLPPFLTLKNFQGLDLGKMDEANDSGLAAYVAGQIDRSLSWKD----VKWLQTITKLPILVKGV----L 234 (366)
Q Consensus 163 g~r~~d~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~----i~~lr~~~~~pv~vK~v----~ 234 (366)
++.. ...+..+|++ ++.+|+. ++-+-..++ -
T Consensus 167 ---------------------------------------~~y~-~I~tt~t~edR~~tl~~vk~~-Gi~vcsGgI~GlGE 205 (335)
T COG0502 167 ---------------------------------------EFYE-NIITTRTYEDRLNTLENVREA-GIEVCSGGIVGLGE 205 (335)
T ss_pred ---------------------------------------HHHc-ccCCCCCHHHHHHHHHHHHHc-CCccccceEecCCC
Confidence 0000 0123345653 5555553 444444433 3
Q ss_pred CHHH--------HHcC-CcEEEEcC---CCccCCCC--CcchHHHHHHHHHH--cCCCceEEEecCCCCHHH--HHHHHH
Q 017781 235 TAED--------VQAG-AAGIIVSN---HGARQLDY--VPATIMALEEVVKA--TQGRIPVFLDGGVRRGTD--VFKALA 296 (366)
Q Consensus 235 ~~~d--------~~aG-ad~I~vs~---~gg~~~~~--~~~~~~~l~~i~~~--~~~~i~vi~~GGI~~~~d--v~kala 296 (366)
+.+| .+.. +|.|-+-. +-|+.+.. ..+.++.++-|+-+ .-.+.-|.++||..+-.. ...++.
T Consensus 206 s~eDri~~l~~L~~l~~pdsVPIn~l~P~~GTPle~~~~~~~~e~lk~IA~~Ri~~P~~~Ir~s~gr~~~~~~~q~~~~~ 285 (335)
T COG0502 206 TVEDRAELLLELANLPTPDSVPINFLNPIPGTPLENAKPLDPFEFLKTIAVARIIMPKSMIRLSAGRETMLPELQALAFM 285 (335)
T ss_pred CHHHHHHHHHHHHhCCCCCeeeeeeecCCCCCccccCCCCCHHHHHHHHHHHHHHCCcceeEccCCcccccHHHHHHHHH
Confidence 5555 5556 88887642 34554432 34566776655432 223566777787665444 466777
Q ss_pred hCcCEEEecH
Q 017781 297 LGASGIFIGR 306 (366)
Q Consensus 297 lGAd~V~igr 306 (366)
+||+.+++|-
T Consensus 286 aGansi~~g~ 295 (335)
T COG0502 286 AGANSIFVGD 295 (335)
T ss_pred hccceeeecc
Confidence 8999999997
|
|
| >PF00218 IGPS: Indole-3-glycerol phosphate synthase; InterPro: IPR013798 Indole-3-glycerol phosphate synthase (4 | Back alignment and domain information |
|---|
Probab=84.32 E-value=4.5 Score=38.18 Aligned_cols=65 Identities=25% Similarity=0.361 Sum_probs=45.8
Q ss_pred HHcCCcEEEEcCCCccCCCCCcchHHHHHHHHHHcCCCceEEEecCCCCHHHHHHHHHhCcCEEEecHHHH
Q 017781 239 VQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFIGRPVV 309 (366)
Q Consensus 239 ~~aGad~I~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~i~vi~~GGI~~~~dv~kalalGAd~V~igr~~l 309 (366)
.++||++|.|-.-. .+-..+++.|..+++.+ ++||+.-==|-++.++.+|-++|||+|.+=-.+|
T Consensus 78 ~~~GA~aiSVlTe~----~~F~Gs~~dL~~v~~~~--~~PvL~KDFIid~~QI~eA~~~GADaVLLI~~~L 142 (254)
T PF00218_consen 78 EEAGAAAISVLTEP----KFFGGSLEDLRAVRKAV--DLPVLRKDFIIDPYQIYEARAAGADAVLLIAAIL 142 (254)
T ss_dssp HHTT-SEEEEE--S----CCCHHHHHHHHHHHHHS--SS-EEEES---SHHHHHHHHHTT-SEEEEEGGGS
T ss_pred HhcCCCEEEEECCC----CCCCCCHHHHHHHHHHh--CCCcccccCCCCHHHHHHHHHcCCCEeehhHHhC
Confidence 88999999885421 11224778888898888 7999998889999999999999999998865543
|
1.1.48 from EC) (IGPS) catalyses the fourth step in the biosynthesis of tryptophan, the ring closure of 1-(2-carboxy-phenylamino)-1-deoxyribulose into indol-3-glycerol-phosphate. In some bacteria, IGPS is a single chain enzyme. In others, such as Escherichia coli, it is the N-terminal domain of a bifunctional enzyme that also catalyses N-(5'-phosphoribosyl)anthranilate isomerase (5.3.1.24 from EC) (PRAI) activity (see IPR001240 from INTERPRO), the third step of tryptophan biosynthesis. In fungi, IGPS is the central domain of a trifunctional enzyme that contains a PRAI C-terminal domain and a glutamine amidotransferase (2.4.2 from EC) (GATase) N-terminal domain (see IPR000991 from INTERPRO). A structure of the IGPS domain of the bifunctional enzyme from the mesophilic bacterium E. coli (eIGPS) has been compared with the monomeric indole-3-glycerol phosphate synthase from the hyperthermophilic archaeon Sulfolobus solfataricus (sIGPS). Both are single-domain (beta/alpha)8 barrel proteins, with one (eIGPS) or two (sIGPS) additional helices inserted before the first beta strand []. ; GO: 0004425 indole-3-glycerol-phosphate synthase activity; PDB: 1VC4_A 1PII_A 1JCM_P 1I4N_B 1J5T_A 3TSM_B 4FB7_A 3QJA_A 1JUL_A 2C3Z_A .... |
| >PLN02493 probable peroxisomal (S)-2-hydroxy-acid oxidase | Back alignment and domain information |
|---|
Probab=83.87 E-value=1.9 Score=42.90 Aligned_cols=43 Identities=26% Similarity=0.465 Sum_probs=37.5
Q ss_pred chHHHHHHHHHHcCCCceEEEecCCCCHHHHHHHHHhCcCEEEecH
Q 017781 261 ATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFIGR 306 (366)
Q Consensus 261 ~~~~~l~~i~~~~~~~i~vi~~GGI~~~~dv~kalalGAd~V~igr 306 (366)
.+|+.|..+++.- ++|||+ .||.+++|+.+++.+|+|+|.+..
T Consensus 211 ~tW~di~wlr~~~--~~Piiv-KgV~~~~dA~~a~~~Gvd~I~Vsn 253 (367)
T PLN02493 211 LSWKDVQWLQTIT--KLPILV-KGVLTGEDARIAIQAGAAGIIVSN 253 (367)
T ss_pred CCHHHHHHHHhcc--CCCEEe-ecCCCHHHHHHHHHcCCCEEEECC
Confidence 4788899888876 799998 558999999999999999999874
|
|
| >PF13714 PEP_mutase: Phosphoenolpyruvate phosphomutase; PDB: 1ZLP_A 3EOO_C 1UJQ_D 1O5Q_A 2DUA_A 2HJP_A 2HRW_A 2QIW_A 3KZ2_B 3IH1_B | Back alignment and domain information |
|---|
Probab=83.68 E-value=8.6 Score=35.88 Aligned_cols=79 Identities=29% Similarity=0.351 Sum_probs=49.7
Q ss_pred CCCEEEEeccCHHH----HHcCCcEEEEcCCCc----cCCCCCcchH----HHHHHHHHHcCCCceEEEec--CCCC-HH
Q 017781 225 KLPILVKGVLTAED----VQAGAAGIIVSNHGA----RQLDYVPATI----MALEEVVKATQGRIPVFLDG--GVRR-GT 289 (366)
Q Consensus 225 ~~pv~vK~v~~~~d----~~aGad~I~vs~~gg----~~~~~~~~~~----~~l~~i~~~~~~~i~vi~~G--GI~~-~~ 289 (366)
+.|+++=++-+.-. .++|.++|.+|+++- ...|.+.-++ +.+.+|.+.+ ++||++|+ |..+ +.
T Consensus 8 ~~~l~~p~~~D~~SAr~~e~~Gf~ai~~sg~~~a~s~G~pD~~~lt~~e~~~~~~~I~~~~--~iPv~vD~d~GyG~~~~ 85 (238)
T PF13714_consen 8 GKPLVLPNVWDALSARLAERAGFDAIATSGAGVAASLGYPDGGLLTLTEMLAAVRRIARAV--SIPVIVDADTGYGNDPE 85 (238)
T ss_dssp SSSEEEEEESSHHHHHHHHHTT-SEEEEHHHHHHHHTTS-SSS-S-HHHHHHHHHHHHHHS--SSEEEEE-TTTSSSSHH
T ss_pred CCcEEeCCCcCHHHHHHHHHcCCCEEEechHHHHHHcCCCCCCCCCHHHHHHHHHHHHhhh--cCcEEEEcccccCchhH
Confidence 36888888876655 899999999987431 1245454444 3455666666 89999987 6655 43
Q ss_pred HH----HHHHHhCcCEEEec
Q 017781 290 DV----FKALALGASGIFIG 305 (366)
Q Consensus 290 dv----~kalalGAd~V~ig 305 (366)
++ .+...+||.++.|-
T Consensus 86 ~v~~tv~~~~~aG~agi~IE 105 (238)
T PF13714_consen 86 NVARTVRELERAGAAGINIE 105 (238)
T ss_dssp HHHHHHHHHHHCT-SEEEEE
T ss_pred HHHHHHHHHHHcCCcEEEee
Confidence 43 34556899999885
|
... |
| >cd06556 ICL_KPHMT Members of the ICL/PEPM_KPHMT enzyme superfamily catalyze the formation and cleavage of either P-C or C-C bonds | Back alignment and domain information |
|---|
Probab=83.68 E-value=4.7 Score=37.71 Aligned_cols=80 Identities=16% Similarity=0.107 Sum_probs=50.0
Q ss_pred CCCEEEEeccCHHH----HHcCCcEEEEcCCCccC----CCCCcchHHH----HHHHHHHcCCCceEEEecCCCCH---H
Q 017781 225 KLPILVKGVLTAED----VQAGAAGIIVSNHGARQ----LDYVPATIMA----LEEVVKATQGRIPVFLDGGVRRG---T 289 (366)
Q Consensus 225 ~~pv~vK~v~~~~d----~~aGad~I~vs~~gg~~----~~~~~~~~~~----l~~i~~~~~~~i~vi~~GGI~~~---~ 289 (366)
+.|+++=++.+.-. .++|+|.|.++..++.. .|.+.-+++. +..+++.. ...||++|.---++ +
T Consensus 11 ~~~i~~~~ayD~~sA~i~e~aG~dai~v~~s~~a~~~G~pD~~~vtl~em~~~~~~I~r~~-~~~pviaD~~~G~g~~~~ 89 (240)
T cd06556 11 KERFATLTAYDYSMAKQFADAGLNVMLVGDSQGMTVAGYDDTLPYPVNDVPYHVRAVRRGA-PLALIVADLPFGAYGAPT 89 (240)
T ss_pred CCeEEEecCCCHHHHHHHHHcCCCEEEEChHHHHHhcCCCCCCCcCHHHHHHHHHHHHhhC-CCCCEEEeCCCCCCcCHH
Confidence 46777766655544 88899999999864421 2333334433 33333333 14799999754433 5
Q ss_pred HH----HHHHHhCcCEEEec
Q 017781 290 DV----FKALALGASGIFIG 305 (366)
Q Consensus 290 dv----~kalalGAd~V~ig 305 (366)
++ .+.+..||++|-|-
T Consensus 90 ~~~~~~~~l~~aGa~gv~iE 109 (240)
T cd06556 90 AAFELAKTFMRAGAAGVKIE 109 (240)
T ss_pred HHHHHHHHHHHcCCcEEEEc
Confidence 54 45667899999993
|
Typical members are phosphoenolpyruvate mutase (PEPM), phosphonopyruvate hydrolase (PPH), carboxyPEP mutase (CPEP mutase), oxaloacetate hydrolase (OAH), isocitrate lyase (ICL), 2-methylisocitrate lyase (MICL), and ketopantoate hydroxymethyltransferase (KPHMT). |
| >TIGR02317 prpB methylisocitrate lyase | Back alignment and domain information |
|---|
Probab=83.67 E-value=4.9 Score=38.57 Aligned_cols=79 Identities=20% Similarity=0.308 Sum_probs=52.3
Q ss_pred CCCEEEEeccCHHH----HHcCCcEEEEcCCCcc----CCCCCcchH----HHHHHHHHHcCCCceEEEec--CCCCHHH
Q 017781 225 KLPILVKGVLTAED----VQAGAAGIIVSNHGAR----QLDYVPATI----MALEEVVKATQGRIPVFLDG--GVRRGTD 290 (366)
Q Consensus 225 ~~pv~vK~v~~~~d----~~aGad~I~vs~~gg~----~~~~~~~~~----~~l~~i~~~~~~~i~vi~~G--GI~~~~d 290 (366)
+.|+++=++.+.-. .++|.++|.+|+++-. ..|.+.-++ +.+.+|.+.+ ++||++|. |..++.+
T Consensus 12 ~~~l~~p~~~Da~SAri~e~aGf~Ai~~sg~~~a~~lG~pD~g~lt~~e~~~~~~~I~~~~--~iPviaD~d~GyG~~~~ 89 (285)
T TIGR02317 12 EDILQIPGAINAMAALLAERAGFEAIYLSGAAVAASLGLPDLGITTLDEVAEDARRITRVT--DLPLLVDADTGFGEAFN 89 (285)
T ss_pred CCcEEeCCCCCHHHHHHHHHcCCCEEEEcHHHHHHhCCCCCCCCCCHHHHHHHHHHHHhcc--CCCEEEECCCCCCCHHH
Confidence 45777666655544 8999999999985421 134333333 3445555555 79999986 7777888
Q ss_pred H---H-HHHHhCcCEEEec
Q 017781 291 V---F-KALALGASGIFIG 305 (366)
Q Consensus 291 v---~-kalalGAd~V~ig 305 (366)
+ + +...+||.++.|-
T Consensus 90 v~~tv~~~~~aG~agi~IE 108 (285)
T TIGR02317 90 VARTVREMEDAGAAAVHIE 108 (285)
T ss_pred HHHHHHHHHHcCCeEEEEe
Confidence 6 3 4445899998884
|
Members of this family are methylisocitrate lyase, also called (2S,3R)-3-hydroxybutane-1,2,3-tricarboxylate pyruvate-lyase. This enzyme acts in propionate metabolism. It cleaves a carbon-carbon bond to convert 2-methylisocitrate to pyruvate plus succinate. Some members of this family have been annotated, incorrectly it seems, as the related protein carboxyphosphoenolpyruvate phosphomutase, which is involved in synthesizing the antibiotic bialaphos in Streptomyces hygroscopicus. |
| >PLN02334 ribulose-phosphate 3-epimerase | Back alignment and domain information |
|---|
Probab=83.47 E-value=36 Score=31.20 Aligned_cols=87 Identities=14% Similarity=0.041 Sum_probs=51.3
Q ss_pred CHHHHHHHHHhcCCCEEEEec-cCHHH-----HHcCCcEEEEcCCCccCCCCCcchHHHHHHHHHHcCCCceEEEecCCC
Q 017781 213 SWKDVKWLQTITKLPILVKGV-LTAED-----VQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVR 286 (366)
Q Consensus 213 ~~~~i~~lr~~~~~pv~vK~v-~~~~d-----~~aGad~I~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~i~vi~~GGI~ 286 (366)
..+.++++|+.++.|+-+-.. .++++ .++|||+|.++. + | +........+..+++. .+-+-.+-.-.
T Consensus 53 g~~~~~~l~~~~~~~~~vhlmv~~p~d~~~~~~~~gad~v~vH~--~-q-~~~d~~~~~~~~i~~~---g~~iGls~~~~ 125 (229)
T PLN02334 53 GPPVVKALRKHTDAPLDCHLMVTNPEDYVPDFAKAGASIFTFHI--E-Q-ASTIHLHRLIQQIKSA---GMKAGVVLNPG 125 (229)
T ss_pred CHHHHHHHHhcCCCcEEEEeccCCHHHHHHHHHHcCCCEEEEee--c-c-ccchhHHHHHHHHHHC---CCeEEEEECCC
Confidence 447889999887777655544 34554 899999998743 3 1 0011223444444432 23232222233
Q ss_pred CHHHHHHHHHhC--cCEEEecH
Q 017781 287 RGTDVFKALALG--ASGIFIGR 306 (366)
Q Consensus 287 ~~~dv~kalalG--Ad~V~igr 306 (366)
|..+.++.+..+ +|.+++|.
T Consensus 126 t~~~~~~~~~~~~~~Dyi~~~~ 147 (229)
T PLN02334 126 TPVEAVEPVVEKGLVDMVLVMS 147 (229)
T ss_pred CCHHHHHHHHhccCCCEEEEEE
Confidence 667777766544 99999985
|
|
| >PRK05437 isopentenyl pyrophosphate isomerase; Provisional | Back alignment and domain information |
|---|
Probab=83.45 E-value=10 Score=37.47 Aligned_cols=91 Identities=11% Similarity=0.055 Sum_probs=58.2
Q ss_pred HHHHHHHHHhc-CCCEEEEec------cCHHH-----HHcCCcEEEEcCCCccC--CCCCcchH----HHHHHHHHHcCC
Q 017781 214 WKDVKWLQTIT-KLPILVKGV------LTAED-----VQAGAAGIIVSNHGARQ--LDYVPATI----MALEEVVKATQG 275 (366)
Q Consensus 214 ~~~i~~lr~~~-~~pv~vK~v------~~~~d-----~~aGad~I~vs~~gg~~--~~~~~~~~----~~l~~i~~~~~~ 275 (366)
.+.++.+|+.. +.|+++=.. .+.++ ...++|++.++-.-... ...+...+ +.+.++++.+
T Consensus 108 ~~~~~~vr~~~p~~p~~aNl~~~~~~~~~~~~~~~~~~~~~adal~l~l~~~qe~~~p~g~~~f~~~le~i~~i~~~~-- 185 (352)
T PRK05437 108 ADSFSVVRKVAPDGLLFANLGAVQLYGYGVEEAQRAVEMIEADALQIHLNPLQELVQPEGDRDFRGWLDNIAEIVSAL-- 185 (352)
T ss_pred HHHHHHHHHHCCCceEEeecCccccCCCCHHHHHHHHHhcCCCcEEEeCccchhhcCCCCcccHHHHHHHHHHHHHhh--
Confidence 35577888877 788877432 12343 56789999885322111 11222233 5677777766
Q ss_pred CceEEE--ecCCCCHHHHHHHHHhCcCEEEecH
Q 017781 276 RIPVFL--DGGVRRGTDVFKALALGASGIFIGR 306 (366)
Q Consensus 276 ~i~vi~--~GGI~~~~dv~kalalGAd~V~igr 306 (366)
++||++ .|.-.+.+++.+....|+|++.++.
T Consensus 186 ~vPVivK~~g~g~s~~~a~~l~~~Gvd~I~Vsg 218 (352)
T PRK05437 186 PVPVIVKEVGFGISKETAKRLADAGVKAIDVAG 218 (352)
T ss_pred CCCEEEEeCCCCCcHHHHHHHHHcCCCEEEECC
Confidence 789987 4544667777777789999999853
|
|
| >cd02811 IDI-2_FMN Isopentenyl-diphosphate:dimethylallyl diphosphate isomerase type 2 (IDI-2) FMN-binding domain | Back alignment and domain information |
|---|
Probab=83.27 E-value=12 Score=36.62 Aligned_cols=92 Identities=14% Similarity=0.092 Sum_probs=57.5
Q ss_pred CHHHHHHHHHhcC-CCEEEEecc------CHHH-----HHcCCcEEEEcCCCcc--CCCCCcchH----HHHHHHHHHcC
Q 017781 213 SWKDVKWLQTITK-LPILVKGVL------TAED-----VQAGAAGIIVSNHGAR--QLDYVPATI----MALEEVVKATQ 274 (366)
Q Consensus 213 ~~~~i~~lr~~~~-~pv~vK~v~------~~~d-----~~aGad~I~vs~~gg~--~~~~~~~~~----~~l~~i~~~~~ 274 (366)
.|+.++.+|+..+ .|+++-... ++++ ..+++|++.++-.-.. ....+...+ +.|..+++.+
T Consensus 99 ~~~~~~~vr~~~~~~p~~~Nl~~~~~~~~~~~~~~~~i~~~~adalel~l~~~q~~~~~~~~~df~~~~~~i~~l~~~~- 177 (326)
T cd02811 99 LAESFTVVREAPPNGPLIANLGAVQLNGYGVEEARRAVEMIEADALAIHLNPLQEAVQPEGDRDFRGWLERIEELVKAL- 177 (326)
T ss_pred hhhHHHHHHHhCCCceEEeecCccccCCCCHHHHHHHHHhcCCCcEEEeCcchHhhcCCCCCcCHHHHHHHHHHHHHhc-
Confidence 4566778888775 887665321 4444 5678999988532110 011122233 5677777766
Q ss_pred CCceEEEe--cCCCCHHHHHHHHHhCcCEEEecH
Q 017781 275 GRIPVFLD--GGVRRGTDVFKALALGASGIFIGR 306 (366)
Q Consensus 275 ~~i~vi~~--GGI~~~~dv~kalalGAd~V~igr 306 (366)
++||++= |--.+.+++.+....|+|++.++.
T Consensus 178 -~vPVivK~~g~g~s~~~a~~l~~~Gvd~I~vsG 210 (326)
T cd02811 178 -SVPVIVKEVGFGISRETAKRLADAGVKAIDVAG 210 (326)
T ss_pred -CCCEEEEecCCCCCHHHHHHHHHcCCCEEEECC
Confidence 7899883 333667777777779999999864
|
Two types of IDIs have been characterized at present. The long known IDI-1 is only dependent on divalent metals for activity, whereas IDI-2 requires a metal, FMN and NADPH. IDI-2 catalyzes the interconversion of isopentenyl diphosphate (IPP) and dimethylallyl diphosphate (DMAPP) in the mevalonate pathway. |
| >COG0167 PyrD Dihydroorotate dehydrogenase [Nucleotide transport and metabolism] | Back alignment and domain information |
|---|
Probab=83.20 E-value=6.5 Score=38.21 Aligned_cols=135 Identities=21% Similarity=0.330 Sum_probs=75.7
Q ss_pred CCceEEEeeecCCHHHHHHHHHHHHHcCCCEEEEecCCCCCcchhHHHhhhcCCCCcccccc-ccccccCCCccccchhh
Q 017781 122 PGIRFFQLYVYKDRNVVAQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLTLKN-FQGLDLGKMDEANDSGL 200 (366)
Q Consensus 122 ~~~~~~Qly~~~d~~~~~~~l~ra~~~G~~ai~vtvd~p~~g~r~~d~~~~~~~p~~~~~~~-~~~~~~~~~~~~~~~~~ 200 (366)
..|.++.|-+ +.+.+.++.+.++++|+++++++ |+-..+-+ -|.... .| ..++ ..+++
T Consensus 161 ~~Pv~vKl~P--~~~di~~iA~~~~~~g~Dgl~~~-NT~~~~~~-id~~~~--~~---~~~~~~GGLS------------ 219 (310)
T COG0167 161 KVPVFVKLAP--NITDIDEIAKAAEEAGADGLIAI-NTTKSGMK-IDLETK--KP---VLANETGGLS------------ 219 (310)
T ss_pred cCceEEEeCC--CHHHHHHHHHHHHHcCCcEEEEE-eecccccc-cccccc--cc---ccCcCCCCcC------------
Confidence 3678888875 77888999999999999998864 33211100 011100 00 0000 00000
Q ss_pred HHHhhhccCCCCCHHHHHHHHHhcC--CCEEEE-eccCHHH----HHcCCcEEEEcCCCccCCCCCcchH-HHHHHHHHH
Q 017781 201 AAYVAGQIDRSLSWKDVKWLQTITK--LPILVK-GVLTAED----VQAGAAGIIVSNHGARQLDYVPATI-MALEEVVKA 272 (366)
Q Consensus 201 ~~~~~~~~d~~~~~~~i~~lr~~~~--~pv~vK-~v~~~~d----~~aGad~I~vs~~gg~~~~~~~~~~-~~l~~i~~~ 272 (366)
+..+ .+...+.|+++++.++ +|||-= |+.+.+| ..+||+.|.|...- +..||.-. +....+.++
T Consensus 220 G~~i-----kp~al~~v~~l~~~~~~~ipIIGvGGI~s~~DA~E~i~aGA~~vQv~Tal---~~~Gp~i~~~I~~~l~~~ 291 (310)
T COG0167 220 GPPL-----KPIALRVVAELYKRLGGDIPIIGVGGIETGEDALEFILAGASAVQVGTAL---IYKGPGIVKEIIKGLARW 291 (310)
T ss_pred cccc-----hHHHHHHHHHHHHhcCCCCcEEEecCcCcHHHHHHHHHcCCchheeeeee---eeeCchHHHHHHHHHHHH
Confidence 0011 1235678888888876 886644 6789988 99999999875421 22344433 233344433
Q ss_pred cCCCceEEEecCCCCHHHHH
Q 017781 273 TQGRIPVFLDGGVRRGTDVF 292 (366)
Q Consensus 273 ~~~~i~vi~~GGI~~~~dv~ 292 (366)
+. .-|+.+-+|+.
T Consensus 292 l~-------~~g~~si~d~i 304 (310)
T COG0167 292 LE-------EKGFESIQDII 304 (310)
T ss_pred HH-------HcCCCCHHHHh
Confidence 32 24566666654
|
|
| >cd00564 TMP_TenI Thiamine monophosphate synthase (TMP synthase)/TenI | Back alignment and domain information |
|---|
Probab=83.19 E-value=30 Score=30.07 Aligned_cols=40 Identities=25% Similarity=0.502 Sum_probs=32.6
Q ss_pred CCCHHHHHHHHHhcCCCEEEEeccCHHH----HHcCCcEEEEcC
Q 017781 211 SLSWKDVKWLQTITKLPILVKGVLTAED----VQAGAAGIIVSN 250 (366)
Q Consensus 211 ~~~~~~i~~lr~~~~~pv~vK~v~~~~d----~~aGad~I~vs~ 250 (366)
...++.++++++..++||++-|..+.++ .++|+|++.+..
T Consensus 136 ~~~~~~~~~~~~~~~~pv~a~GGi~~~~i~~~~~~Ga~~i~~g~ 179 (196)
T cd00564 136 PLGLELLREIAELVEIPVVAIGGITPENAAEVLAAGADGVAVIS 179 (196)
T ss_pred CCCHHHHHHHHHhCCCCEEEECCCCHHHHHHHHHcCCCEEEEeh
Confidence 3468888999887889999988777765 889999998753
|
TMP synthase catalyzes an important step in the thiamine biosynthesis pathway, the substitution of the pyrophosphate of 2-methyl-4-amino-5- hydroxymethylpyrimidine pyrophosphate by 4-methyl-5- (beta-hydroxyethyl) thiazole phosphate to yield thiamine phosphate. TenI is a enzymatically inactive regulatory protein involved in the regulation of several extracellular enzymes. This superfamily also contains other enzymatically inactive proteins with unknown functions. |
| >PRK07084 fructose-bisphosphate aldolase; Provisional | Back alignment and domain information |
|---|
Probab=83.15 E-value=26 Score=34.20 Aligned_cols=72 Identities=24% Similarity=0.277 Sum_probs=53.2
Q ss_pred HHcCCcEEEEcC---CCccCC-C---CCcchHHHHHHHHHHcCCCceEEEecCCCC----------------------HH
Q 017781 239 VQAGAAGIIVSN---HGARQL-D---YVPATIMALEEVVKATQGRIPVFLDGGVRR----------------------GT 289 (366)
Q Consensus 239 ~~aGad~I~vs~---~gg~~~-~---~~~~~~~~l~~i~~~~~~~i~vi~~GGI~~----------------------~~ 289 (366)
.+.|+|.+-++. ||-+.. + ...-.++.|.+|.+.+. ++|+..=||=.. -+
T Consensus 174 ~~TgvD~LAvaiGt~HG~Y~~~~~~~~p~Ld~d~L~~I~~~~~-~vPLVLHGgSg~~~~~~~~~~~~g~~~~~~~Gi~~e 252 (321)
T PRK07084 174 KKTGVDSLAISIGTSHGAYKFKPGQCPPPLRFDILEEIEKRIP-GFPIVLHGSSSVPQEYVKTINEYGGKLKDAIGIPEE 252 (321)
T ss_pred HHhCCCEEeeccccccccccCCCCCCCCccCHHHHHHHHHhcC-CCCEEEeCCCCCcHHHHHHHHHhcCccccCCCCCHH
Confidence 567999999875 553321 0 11236789999999883 599998887533 38
Q ss_pred HHHHHHHhCcCEEEecHHHHHH
Q 017781 290 DVFKALALGASGIFIGRPVVYS 311 (366)
Q Consensus 290 dv~kalalGAd~V~igr~~l~~ 311 (366)
|+.||+.+|..-|-+++-+..+
T Consensus 253 ~~~kai~~GI~KINi~Tdl~~a 274 (321)
T PRK07084 253 QLRKAAKSAVCKINIDSDGRLA 274 (321)
T ss_pred HHHHHHHcCCceeccchHHHHH
Confidence 8999999999999999976544
|
|
| >PLN02535 glycolate oxidase | Back alignment and domain information |
|---|
Probab=83.03 E-value=2 Score=42.68 Aligned_cols=42 Identities=26% Similarity=0.496 Sum_probs=36.9
Q ss_pred chHHHHHHHHHHcCCCceEEEecCCCCHHHHHHHHHhCcCEEEec
Q 017781 261 ATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFIG 305 (366)
Q Consensus 261 ~~~~~l~~i~~~~~~~i~vi~~GGI~~~~dv~kalalGAd~V~ig 305 (366)
.+|+.+..+++.. ++|||+ .||-+++|+.++..+|+|+|.+.
T Consensus 210 ~tW~~i~~lr~~~--~~Pviv-KgV~~~~dA~~a~~~GvD~I~vs 251 (364)
T PLN02535 210 LSWKDIEWLRSIT--NLPILI-KGVLTREDAIKAVEVGVAGIIVS 251 (364)
T ss_pred CCHHHHHHHHhcc--CCCEEE-ecCCCHHHHHHHHhcCCCEEEEe
Confidence 4788888888866 799888 66999999999999999999885
|
|
| >PRK15452 putative protease; Provisional | Back alignment and domain information |
|---|
Probab=83.01 E-value=22 Score=36.29 Aligned_cols=57 Identities=16% Similarity=0.230 Sum_probs=40.6
Q ss_pred HHcCCcEEEEcCCCccCCCCCcchHHHHHHHHHHcCCCceEEEec--CCCCHHHHHHHHHhCcCEEEecHHH
Q 017781 239 VQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDG--GVRRGTDVFKALALGASGIFIGRPV 308 (366)
Q Consensus 239 ~~aGad~I~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~i~vi~~G--GI~~~~dv~kalalGAd~V~igr~~ 308 (366)
.++|+|+|+|++-| .+.-+++.. .+++|.+|- .|.+...+.-...+|++.|.+.+-+
T Consensus 86 ~~~gvDgvIV~d~G------------~l~~~ke~~-p~l~ih~stqlni~N~~a~~f~~~lG~~rvvLSrEL 144 (443)
T PRK15452 86 IAMKPDALIMSDPG------------LIMMVREHF-PEMPIHLSVQANAVNWATVKFWQQMGLTRVILSREL 144 (443)
T ss_pred HhCCCCEEEEcCHH------------HHHHHHHhC-CCCeEEEEecccCCCHHHHHHHHHCCCcEEEECCcC
Confidence 68999999997733 233333332 267888887 5677777766667999999999865
|
|
| >cd04736 MDH_FMN Mandelate dehydrogenase (MDH)-like FMN-binding domain | Back alignment and domain information |
|---|
Probab=82.95 E-value=2.4 Score=42.11 Aligned_cols=41 Identities=17% Similarity=0.313 Sum_probs=36.4
Q ss_pred hHHHHHHHHHHcCCCceEEEecCCCCHHHHHHHHHhCcCEEEec
Q 017781 262 TIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFIG 305 (366)
Q Consensus 262 ~~~~l~~i~~~~~~~i~vi~~GGI~~~~dv~kalalGAd~V~ig 305 (366)
+|+.+.++++.. +.|||+- ||.+++|+.+++.+|+|+|.++
T Consensus 224 ~w~~i~~ir~~~--~~pviiK-gV~~~eda~~a~~~G~d~I~VS 264 (361)
T cd04736 224 NWQDLRWLRDLW--PHKLLVK-GIVTAEDAKRCIELGADGVILS 264 (361)
T ss_pred CHHHHHHHHHhC--CCCEEEe-cCCCHHHHHHHHHCCcCEEEEC
Confidence 678899999887 6788887 4999999999999999999886
|
MDH is part of a widespread family of homologous FMN-dependent a-hydroxy acid oxidizing enzymes that oxidizes (S)-mandelate to phenylglyoxalate. MDH is an enzyme in the mandelate pathway that occurs in several strains of Pseudomonas which converts (R)-mandelate to benzoate. This family occurs in both prokaryotes and eukaryotes. Members of this family include flavocytochrome b2 (FCB2), glycolate oxidase (GOX), lactate monooxygenase (LMO), mandelate dehydrogenase (MDH), and long chain hydroxyacid oxidase (LCHAO). |
| >PRK00043 thiE thiamine-phosphate pyrophosphorylase; Reviewed | Back alignment and domain information |
|---|
Probab=82.69 E-value=34 Score=30.47 Aligned_cols=39 Identities=26% Similarity=0.499 Sum_probs=32.6
Q ss_pred CCHHHHHHHHHhcC-CCEEEEeccCHHH----HHcCCcEEEEcC
Q 017781 212 LSWKDVKWLQTITK-LPILVKGVLTAED----VQAGAAGIIVSN 250 (366)
Q Consensus 212 ~~~~~i~~lr~~~~-~pv~vK~v~~~~d----~~aGad~I~vs~ 250 (366)
..++.++++++..+ +||++=|..+.++ .++|+|++++..
T Consensus 146 ~g~~~~~~~~~~~~~~~v~a~GGI~~~~i~~~~~~Ga~gv~~gs 189 (212)
T PRK00043 146 QGLEGLREIRAAVGDIPIVAIGGITPENAPEVLEAGADGVAVVS 189 (212)
T ss_pred CCHHHHHHHHHhcCCCCEEEECCcCHHHHHHHHHcCCCEEEEeH
Confidence 35888999998887 9999998878776 899999998743
|
|
| >cd00953 KDG_aldolase KDG (2-keto-3-deoxygluconate) aldolases found in archaea | Back alignment and domain information |
|---|
Probab=82.62 E-value=7.4 Score=37.04 Aligned_cols=86 Identities=13% Similarity=0.125 Sum_probs=50.3
Q ss_pred HHcCCcEEEEcCCCccCCCCCcc-hHHHHHHHHHHcCCCceEEEecCCCCHHHHHH----HHHhCcCEEEecHHHHHHhh
Q 017781 239 VQAGAAGIIVSNHGARQLDYVPA-TIMALEEVVKATQGRIPVFLDGGVRRGTDVFK----ALALGASGIFIGRPVVYSLA 313 (366)
Q Consensus 239 ~~aGad~I~vs~~gg~~~~~~~~-~~~~l~~i~~~~~~~i~vi~~GGI~~~~dv~k----alalGAd~V~igr~~l~~l~ 313 (366)
.+.|+|+|.+.++.|....-... ..+.+..+++.. +++ +...|+ .+-.|+++ |-.+|||+|++-.|+++..
T Consensus 30 ~~~Gv~Gl~~~GstGE~~~Lt~eEr~~l~~~~~~~~-~~v-i~gvg~-~~~~~ai~~a~~a~~~Gad~v~v~~P~y~~~- 105 (279)
T cd00953 30 ISKGIDYVFVAGTTGLGPSLSFQEKLELLKAYSDIT-DKV-IFQVGS-LNLEESIELARAAKSFGIYAIASLPPYYFPG- 105 (279)
T ss_pred HHcCCcEEEEcccCCCcccCCHHHHHHHHHHHHHHc-CCE-EEEeCc-CCHHHHHHHHHHHHHcCCCEEEEeCCcCCCC-
Confidence 56799999998876643222222 234455555555 232 444443 34444443 2338999999999987531
Q ss_pred hcCHHHHHHHHHHHHH
Q 017781 314 AEGEKGVRRVLEMLRE 329 (366)
Q Consensus 314 ~~G~~gv~~~~~~l~~ 329 (366)
..++++.+++..+.+
T Consensus 106 -~~~~~i~~yf~~v~~ 120 (279)
T cd00953 106 -IPEEWLIKYFTDISS 120 (279)
T ss_pred -CCHHHHHHHHHHHHh
Confidence 135677666666655
|
This subfamily of enzymes is adapted for high thermostability and shows specificity for non-phosphorylated substrates. The enzyme catalyses the reversible aldol cleavage of 2-keto-3-dexoygluconate to pyruvate and glyceraldehyde, the third step of a modified non-phosphorylated Entner-Doudoroff pathway of glucose oxidation. KDG aldolase shows no significant sequence similarity to microbial 2-keto-3-deoxyphosphogluconate (KDPG) aldolases, and the enzyme shows no activity with glyceraldehyde 3-phosphate as substrate. The enzyme is a tetramer and a member of the DHDPS family of Schiff-base-dependent class I aldolases. |
| >TIGR00640 acid_CoA_mut_C methylmalonyl-CoA mutase C-terminal domain | Back alignment and domain information |
|---|
Probab=82.52 E-value=13 Score=31.40 Aligned_cols=80 Identities=21% Similarity=0.200 Sum_probs=49.3
Q ss_pred HHHHHHHhcCCCEEEEec-cCHHH-----HHcCCcEEEEcCCCccCCCCCcchHHHHHHHHHHc----CCCceEEEecCC
Q 017781 216 DVKWLQTITKLPILVKGV-LTAED-----VQAGAAGIIVSNHGARQLDYVPATIMALEEVVKAT----QGRIPVFLDGGV 285 (366)
Q Consensus 216 ~i~~lr~~~~~pv~vK~v-~~~~d-----~~aGad~I~vs~~gg~~~~~~~~~~~~l~~i~~~~----~~~i~vi~~GGI 285 (366)
.+..+-+..+.-|+--++ .++++ .+.++|.|.+|..-+ .+.+..+++.+.+ .++++|++ ||.
T Consensus 21 iv~~~l~~~GfeVi~lg~~~s~e~~v~aa~e~~adii~iSsl~~-------~~~~~~~~~~~~L~~~g~~~i~viv-GG~ 92 (132)
T TIGR00640 21 VIATAYADLGFDVDVGPLFQTPEEIARQAVEADVHVVGVSSLAG-------GHLTLVPALRKELDKLGRPDILVVV-GGV 92 (132)
T ss_pred HHHHHHHhCCcEEEECCCCCCHHHHHHHHHHcCCCEEEEcCchh-------hhHHHHHHHHHHHHhcCCCCCEEEE-eCC
Confidence 344444445665555555 35555 788999999987532 2333333333333 12566666 776
Q ss_pred CCHHHHHHHHHhCcCEEE
Q 017781 286 RRGTDVFKALALGASGIF 303 (366)
Q Consensus 286 ~~~~dv~kalalGAd~V~ 303 (366)
.-.+|.....++|.|.+.
T Consensus 93 ~~~~~~~~l~~~Gvd~~~ 110 (132)
T TIGR00640 93 IPPQDFDELKEMGVAEIF 110 (132)
T ss_pred CChHhHHHHHHCCCCEEE
Confidence 677888888899987764
|
Methylmalonyl-CoA mutase (EC 5.4.99.2) catalyzes a reversible isomerization between L-methylmalonyl-CoA and succinyl-CoA. The enzyme uses an adenosylcobalamin cofactor. It may be a homodimer, as in mitochondrion, or a heterodimer with partially homologous beta chain that does not bind the adenosylcobalamin cofactor, as in Propionibacterium freudenreichii. The most similar archaeal sequences are separate chains, such as AF2215 and AF2219 of Archaeoglobus fulgidus, that correspond roughly to the first 500 and last 130 residues, respectively of known methylmalonyl-CoA mutases. This model describes the C-terminal domain subfamily. In a neighbor-joining tree (methylaspartate mutase S chain as the outgroup), AF2219 branches with a coenzyme B12-dependent enzyme known not to be 5.4.99.2. |
| >COG1411 Uncharacterized protein related to proFAR isomerase (HisA) [General function prediction only] | Back alignment and domain information |
|---|
Probab=82.20 E-value=2.3 Score=38.51 Aligned_cols=49 Identities=27% Similarity=0.429 Sum_probs=40.9
Q ss_pred chHHHHHHHHHHcCCCceEEEecCCCCHHHHHHHHHhCcCEEEecHHHHHH
Q 017781 261 ATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFIGRPVVYS 311 (366)
Q Consensus 261 ~~~~~l~~i~~~~~~~i~vi~~GGI~~~~dv~kalalGAd~V~igr~~l~~ 311 (366)
+..+++..+.... .-||+.-|||+-.+|..-+..+|.++|.+||++..+
T Consensus 168 ~~~E~l~~~~~~s--~~pVllGGGV~g~Edlel~~~~Gv~gvLvaTalh~G 216 (229)
T COG1411 168 PDYELLTKVLELS--EHPVLLGGGVGGMEDLELLLGMGVSGVLVATALHEG 216 (229)
T ss_pred CCHHHHHHHHHhc--cCceeecCCcCcHHHHHHHhcCCCceeeehhhhhcC
Confidence 4567776666554 679999999999999999999999999999987543
|
|
| >COG1830 FbaB DhnA-type fructose-1,6-bisphosphate aldolase and related enzymes [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=82.16 E-value=14 Score=34.91 Aligned_cols=71 Identities=24% Similarity=0.274 Sum_probs=39.7
Q ss_pred ccCHHH-HHcCCcEEEEcCCCccCCCCCcchHHHHHHHHHHcC-CCceEEEe-----cCC----CCHHHHH-----HHHH
Q 017781 233 VLTAED-VQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQ-GRIPVFLD-----GGV----RRGTDVF-----KALA 296 (366)
Q Consensus 233 v~~~~d-~~aGad~I~vs~~gg~~~~~~~~~~~~l~~i~~~~~-~~i~vi~~-----GGI----~~~~dv~-----kala 296 (366)
+.++|+ ..+|+|++.+.-..|...+ .-.++.+.++++... -.+|+++- =.+ ..-.|.+ -+.+
T Consensus 100 ~~~ve~ai~lgadAV~~~Vy~Gse~e--~~~i~~~~~v~~~a~~~Gmp~v~~~YpRg~~~~~~~~~d~~~v~~aaRlaae 177 (265)
T COG1830 100 VATVEDAIRLGADAVGATVYVGSETE--REMIENISQVVEDAHELGMPLVAWAYPRGPAIKDEYHRDADLVGYAARLAAE 177 (265)
T ss_pred eeeHHHHHhCCCcEEEEEEecCCcch--HHHHHHHHHHHHHHHHcCCceEEEEeccCCcccccccccHHHHHHHHHHHHH
Confidence 346677 9999999987755543211 123334444443321 26787771 122 2233333 3566
Q ss_pred hCcCEEEec
Q 017781 297 LGASGIFIG 305 (366)
Q Consensus 297 lGAd~V~ig 305 (366)
+|||.|=..
T Consensus 178 lGADIiK~~ 186 (265)
T COG1830 178 LGADIIKTK 186 (265)
T ss_pred hcCCeEeec
Confidence 899999765
|
|
| >COG0516 GuaB IMP dehydrogenase/GMP reductase [Nucleotide transport and metabolism] | Back alignment and domain information |
|---|
Probab=82.07 E-value=0.66 Score=40.95 Aligned_cols=59 Identities=20% Similarity=0.244 Sum_probs=44.7
Q ss_pred cccceeeeccccC-CCCCCccceeEcC-cccCCceEecccccccccCChhhHHHHHHHHHcCCceec
Q 017781 42 AFSRILFRPRILI-DVSKIDMNTTVLG-FKISMPIMIAPTAMQKMAHPEGEYATARAASAAGTIMTL 106 (366)
Q Consensus 42 ~f~~i~l~pr~l~-~~~~vd~st~l~g-~~l~~Pi~iApm~~~~l~~~~~e~~la~aa~~~G~~~~v 106 (366)
.|+++.++|..-. ...++|++|.+.. ..+..|++.|+|...+ |..+|.+.++.|...++
T Consensus 16 tfddVll~p~~s~v~p~~~~vkt~i~~~i~l~iP~vSA~MDtVt------ea~mAi~ma~~GGIGVi 76 (170)
T COG0516 16 TFDDVLLLPAASDVAPAGVDVKTGLGPGIGVNIPQVSAAMDTVT------EARMAIAMARDGGIGVM 76 (170)
T ss_pred eeccCcchhhHHhhccCCCeeEecccCCcccCchHHHHHHHHHH------HHHHhHHHHHcCCeEEE
Confidence 5999999996542 3345999999985 8999999999995433 66777777777766555
|
|
| >PRK07455 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional | Back alignment and domain information |
|---|
Probab=81.71 E-value=14 Score=32.95 Aligned_cols=82 Identities=15% Similarity=0.082 Sum_probs=52.9
Q ss_pred CHHHHHHHHHhcCCCEEEEeccCHHH--------HHcCCcEEEEcCCCccCCCCCcchHHHHHHHHHHcCCCceEEEecC
Q 017781 213 SWKDVKWLQTITKLPILVKGVLTAED--------VQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGG 284 (366)
Q Consensus 213 ~~~~i~~lr~~~~~pv~vK~v~~~~d--------~~aGad~I~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~i~vi~~GG 284 (366)
.|+.++.+.+.-=+|| +.. .+.++ .+.|++.|.+... .+...+.+..+++.. ..-.+..|-
T Consensus 2 ~~~~~~~l~~~~~~~v-~r~-~~~~~~~~~~~~~~~~Gv~~vqlr~k-------~~~~~e~~~~~~~~~--~~~~~g~gt 70 (187)
T PRK07455 2 QQDWLAQLQQHRAIAV-IRA-PDLELGLQMAEAVAAGGMRLIEITWN-------SDQPAELISQLREKL--PECIIGTGT 70 (187)
T ss_pred chHHHHHHHhCCEEEE-EEc-CCHHHHHHHHHHHHHCCCCEEEEeCC-------CCCHHHHHHHHHHhC--CCcEEeEEE
Confidence 3566666655311232 222 24443 8889999987542 234556666666543 344566788
Q ss_pred CCCHHHHHHHHHhCcCEEEec
Q 017781 285 VRRGTDVFKALALGASGIFIG 305 (366)
Q Consensus 285 I~~~~dv~kalalGAd~V~ig 305 (366)
+.+.+++-.|+++|||+|.++
T Consensus 71 vl~~d~~~~A~~~gAdgv~~p 91 (187)
T PRK07455 71 ILTLEDLEEAIAAGAQFCFTP 91 (187)
T ss_pred EEcHHHHHHHHHcCCCEEECC
Confidence 999999999999999999444
|
|
| >KOG0623 consensus Glutamine amidotransferase/cyclase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=81.44 E-value=3.4 Score=40.37 Aligned_cols=71 Identities=27% Similarity=0.336 Sum_probs=53.1
Q ss_pred HHcCCcEEEEcCCCc-cCC-CCCcchHHHHHHHHHHcCCCceEEEecCCCCHHHH-----------HHHHHhCcCEEEec
Q 017781 239 VQAGAAGIIVSNHGA-RQL-DYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDV-----------FKALALGASGIFIG 305 (366)
Q Consensus 239 ~~aGad~I~vs~~gg-~~~-~~~~~~~~~l~~i~~~~~~~i~vi~~GGI~~~~dv-----------~kalalGAd~V~ig 305 (366)
.+-|||-|+.-|-.+ |.- -...|.+++|.+.++.+ =+|+-+-||||+-.|+ ..++..|||-|.||
T Consensus 279 yq~GADEv~FLNITsFRdcPl~D~PMlqVL~qaaktV--FVPLTVGGGIrD~~D~dGt~~palEVA~~YFRSGADKvSIG 356 (541)
T KOG0623|consen 279 YQDGADEVSFLNITSFRDCPLGDLPMLQVLRQAAKTV--FVPLTVGGGIRDFTDADGTYYPALEVAAEYFRSGADKVSIG 356 (541)
T ss_pred HhcCCceeEEEeeccccCCCcccChHHHHHHHhhceE--EEEEeecCcccccccCCCcCchhHHHHHHHHhcCCceeeec
Confidence 778999998777433 321 23356788888877766 5899999999987663 45677899999999
Q ss_pred HHHHHH
Q 017781 306 RPVVYS 311 (366)
Q Consensus 306 r~~l~~ 311 (366)
+-..++
T Consensus 357 sDAVyA 362 (541)
T KOG0623|consen 357 SDAVYA 362 (541)
T ss_pred hhHHHH
Confidence 976665
|
|
| >PRK01222 N-(5'-phosphoribosyl)anthranilate isomerase; Provisional | Back alignment and domain information |
|---|
Probab=81.23 E-value=17 Score=33.23 Aligned_cols=90 Identities=18% Similarity=0.211 Sum_probs=55.9
Q ss_pred CCCCCHHHHHHHHHhcCCCEEEEecc-CHHH------HHcCCcEEEEcCC----CccCCCCCcchHHHHHHHHHHcCCCc
Q 017781 209 DRSLSWKDVKWLQTITKLPILVKGVL-TAED------VQAGAAGIIVSNH----GARQLDYVPATIMALEEVVKATQGRI 277 (366)
Q Consensus 209 d~~~~~~~i~~lr~~~~~pv~vK~v~-~~~d------~~aGad~I~vs~~----gg~~~~~~~~~~~~l~~i~~~~~~~i 277 (366)
+.+.+.+.++.+|+..+++++-.... ...+ ....+|++.+... ||+. -.-.|+.+. +.. ..
T Consensus 84 Hg~e~~~~~~~l~~~~~~~iik~i~v~~~~~l~~~~~~~~~~d~~L~Ds~~~~~GGtG---~~~dw~~l~---~~~--~~ 155 (210)
T PRK01222 84 HGDETPEFCRQLKRRYGLPVIKALRVRSAGDLEAAAAYYGDADGLLLDAYVGLPGGTG---KTFDWSLLP---AGL--AK 155 (210)
T ss_pred CCCCCHHHHHHHHhhcCCcEEEEEecCCHHHHHHHHhhhccCCEEEEcCCCCCCCCCC---CccchHHhh---hcc--CC
Confidence 33446677889998777775433322 2222 2236899988763 3221 112455551 122 46
Q ss_pred eEEEecCCCCHHHHHHHHH-hCcCEEEecHH
Q 017781 278 PVFLDGGVRRGTDVFKALA-LGASGIFIGRP 307 (366)
Q Consensus 278 ~vi~~GGI~~~~dv~kala-lGAd~V~igr~ 307 (366)
|++..||| +++.+.+++. ++..+|=+.+-
T Consensus 156 p~~LAGGi-~peNv~~ai~~~~p~gvDvsSg 185 (210)
T PRK01222 156 PWILAGGL-NPDNVAEAIRQVRPYGVDVSSG 185 (210)
T ss_pred CEEEECCC-CHHHHHHHHHhcCCCEEEecCc
Confidence 99999999 6889999998 47777777643
|
|
| >COG2070 Dioxygenases related to 2-nitropropane dioxygenase [General function prediction only] | Back alignment and domain information |
|---|
Probab=81.18 E-value=19 Score=35.41 Aligned_cols=114 Identities=21% Similarity=0.318 Sum_probs=68.3
Q ss_pred hHHHHHHHHHcCCceecCCCCCCCHHHHhccCC-CceEEEeeecCCHHHHHHHHHHHHHcCCCEEEEecCCCCCcchhHH
Q 017781 90 EYATARAASAAGTIMTLSSWSTSSVEEVASTGP-GIRFFQLYVYKDRNVVAQLVRRAERAGFKAIALTVDTPRLGRREAD 168 (366)
Q Consensus 90 e~~la~aa~~~G~~~~vs~~~~~~~e~i~~~~~-~~~~~Qly~~~d~~~~~~~l~ra~~~G~~ai~vtvd~p~~g~r~~d 168 (366)
+..+--.+..+|++.+..++...+-+.+..... +...+.... +.+..++++++|+++++.. .+..|
T Consensus 93 ~~~~~~ii~~~~vpvv~~~~g~~~~~~i~~~~~~g~~v~~~v~------~~~~A~~~~~~G~d~vI~~--g~eAG----- 159 (336)
T COG2070 93 EAGVDAIIEGAGVPVVSTSFGAPPAEFVARLKAAGIKVIHSVI------TVREALKAERAGADAVIAQ--GAEAG----- 159 (336)
T ss_pred HHhhhhHHhcCCCCEEeccCCCCcHHHHHHHHHcCCeEEEEeC------CHHHHHHHHhCCCCEEEec--CCcCC-----
Confidence 455666677779999987776333344332211 223333221 2345678889999998751 11000
Q ss_pred HhhhcCCCCccccccccccccCCCccccchhhHHHhhhccCCCC-CHHHHHHHHHhcC-CCEEEEec-cCHHH----HHc
Q 017781 169 IKNRFTLPPFLTLKNFQGLDLGKMDEANDSGLAAYVAGQIDRSL-SWKDVKWLQTITK-LPILVKGV-LTAED----VQA 241 (366)
Q Consensus 169 ~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~-~~~~i~~lr~~~~-~pv~vK~v-~~~~d----~~a 241 (366)
.|... .+..+ +...+.++++.++ +||+.-|. .+.++ ...
T Consensus 160 ---------------------------------GH~g~-~~~~~~t~~Lv~ev~~~~~~iPViAAGGI~dg~~i~AAlal 205 (336)
T COG2070 160 ---------------------------------GHRGG-VDLEVSTFALVPEVVDAVDGIPVIAAGGIADGRGIAAALAL 205 (336)
T ss_pred ---------------------------------CcCCC-CCCCccHHHHHHHHHHHhcCCCEEEecCccChHHHHHHHHh
Confidence 01000 12233 3456899999998 89999965 56665 889
Q ss_pred CCcEEEEcC
Q 017781 242 GAAGIIVSN 250 (366)
Q Consensus 242 Gad~I~vs~ 250 (366)
|||+|.+..
T Consensus 206 GA~gVq~GT 214 (336)
T COG2070 206 GADGVQMGT 214 (336)
T ss_pred ccHHHHhhh
Confidence 999998754
|
|
| >PF00563 EAL: EAL domain; InterPro: IPR001633 This domain is found in diverse bacterial signalling proteins | Back alignment and domain information |
|---|
Probab=81.15 E-value=4.8 Score=36.22 Aligned_cols=84 Identities=18% Similarity=0.171 Sum_probs=56.8
Q ss_pred HHHHHHHHhcCCCEEEEecc----CHHH-HHcCCcEEEEcCCCccCCCCCcc---hHHHHHHHHHHcCCCceEEEecCCC
Q 017781 215 KDVKWLQTITKLPILVKGVL----TAED-VQAGAAGIIVSNHGARQLDYVPA---TIMALEEVVKATQGRIPVFLDGGVR 286 (366)
Q Consensus 215 ~~i~~lr~~~~~pv~vK~v~----~~~d-~~aGad~I~vs~~gg~~~~~~~~---~~~~l~~i~~~~~~~i~vi~~GGI~ 286 (366)
+.++.+|+ .+..+.+.... +.+. ....+|+|.++..--+.+. ... .++.+..+.+.. .+.||++| |.
T Consensus 138 ~~l~~l~~-~G~~i~ld~~g~~~~~~~~l~~l~~~~ikld~~~~~~~~-~~~~~~~l~~l~~~~~~~--~~~via~g-Ve 212 (236)
T PF00563_consen 138 ENLRRLRS-LGFRIALDDFGSGSSSLEYLASLPPDYIKLDGSLVRDLS-DEEAQSLLQSLINLAKSL--GIKVIAEG-VE 212 (236)
T ss_dssp HHHHHHHH-CT-EEEEEEETSTCGCHHHHHHHCGSEEEEEHHGHTTTT-SHHHHHHHHHHHHHHHHT--T-EEEEEC-E-
T ss_pred HHHHHHHh-cCceeEeeeccCCcchhhhhhhcccccceeecccccccc-hhhHHHHHHHHHHHhhcc--ccccceee-cC
Confidence 45777777 68899998763 2333 8889999999874322233 322 334444455544 78899976 99
Q ss_pred CHHHHHHHHHhCcCEEE
Q 017781 287 RGTDVFKALALGASGIF 303 (366)
Q Consensus 287 ~~~dv~kalalGAd~V~ 303 (366)
+.++.-.+..+|++.++
T Consensus 213 ~~~~~~~l~~~G~~~~Q 229 (236)
T PF00563_consen 213 SEEQLELLKELGVDYIQ 229 (236)
T ss_dssp SHHHHHHHHHTTESEEE
T ss_pred CHHHHHHHHHcCCCEEE
Confidence 99999999999999886
|
It is called EAL after its conserved residues. The EAL domain is a good candidate for a diguanylate phosphodiesterase function []. The domain contains many conserved acidic residues that could participate in metal binding and might form the phosphodiesterase active site. It often but not always occurs along with IPR000014 from INTERPRO and IPR000160 from INTERPRO domains that are also found in many signalling proteins.; PDB: 3PJU_A 3PJX_A 3PJW_A 3PJT_B 3KZP_B 3U2E_B 3S83_A 2R6O_B 3N3T_B 3GG1_A .... |
| >COG0176 MipB Transaldolase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=81.03 E-value=48 Score=30.98 Aligned_cols=96 Identities=19% Similarity=0.181 Sum_probs=68.0
Q ss_pred HHHHHHHhcCCCEEEEeccCHHH----HHcCCcEEEEcCCCccCCCCCcchHHHHHHHHHHc---CCC-ceEEEecCCCC
Q 017781 216 DVKWLQTITKLPILVKGVLTAED----VQAGAAGIIVSNHGARQLDYVPATIMALEEVVKAT---QGR-IPVFLDGGVRR 287 (366)
Q Consensus 216 ~i~~lr~~~~~pv~vK~v~~~~d----~~aGad~I~vs~~gg~~~~~~~~~~~~l~~i~~~~---~~~-i~vi~~GGI~~ 287 (366)
.++.+++. ++++-+-.+.+... .++|++.|. -.-||-.|++......+.++++.. ... ..+++- +++.
T Consensus 107 Ai~~L~~e-GI~~NvTLiFS~~QAl~aa~aga~~iS--pFvgRi~D~~~d~~~~I~~~~~iy~~y~~~~~~t~va-s~~~ 182 (239)
T COG0176 107 AIKALEAE-GIKTNVTLIFSAAQALLAAEAGATYIS--PFVGRIDDWGIDGMLGIAEAREIYDYYKQHGAKTLVA-SARF 182 (239)
T ss_pred HHHHHHHC-CCeeeEEEEecHHHHHHHHHhCCeEEE--eecchHHhhccCchHHHHHHHHHHHHhccccceEEEe-cCcc
Confidence 45555554 68888888888876 888887664 444666666665555555555433 223 456665 4999
Q ss_pred HHHHHHHHHhCcCEEEecHHHHHHhhhc
Q 017781 288 GTDVFKALALGASGIFIGRPVVYSLAAE 315 (366)
Q Consensus 288 ~~dv~kalalGAd~V~igr~~l~~l~~~ 315 (366)
+.++..+..+|||.+-+.-..+..+...
T Consensus 183 ~~~~~~~~l~G~d~~Tip~~~l~~l~~~ 210 (239)
T COG0176 183 PNHVYIAALAGADVLTIPPDLLKQLLKH 210 (239)
T ss_pred HHHHHHHHHhCCCcccCCHHHHHHHHhc
Confidence 9999999999999999998888776544
|
|
| >PRK05581 ribulose-phosphate 3-epimerase; Validated | Back alignment and domain information |
|---|
Probab=80.96 E-value=42 Score=30.19 Aligned_cols=121 Identities=18% Similarity=0.111 Sum_probs=70.7
Q ss_pred CCHHHHHHHHHHHHHcCCCEEEEecCCCCCcchhHHHhhhcCCCCccccccccccccCCCccccchhhHHHhhhccCCCC
Q 017781 133 KDRNVVAQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLTLKNFQGLDLGKMDEANDSGLAAYVAGQIDRSL 212 (366)
Q Consensus 133 ~d~~~~~~~l~ra~~~G~~ai~vtvd~p~~g~r~~d~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~ 212 (366)
.|.....+.++++.+.|++.+-+.+- | +--.| ...+
T Consensus 13 ~~~~~~~~~~~~~~~~G~~~i~l~~~---------d---~~~~~--------------------------------~~~~ 48 (220)
T PRK05581 13 ADFARLGEEVKAVEAAGADWIHVDVM---------D---GHFVP--------------------------------NLTI 48 (220)
T ss_pred CCHHHHHHHHHHHHHcCCCEEEEeCc---------c---CCcCC--------------------------------CcCc
Confidence 46666778899999999999866311 0 00000 1123
Q ss_pred CHHHHHHHHHhcCCCEEEEec-cCHHH-----HHcCCcEEEEcCCCccCCCCCcchHHHHHHHHHHcCCCceEEEecCCC
Q 017781 213 SWKDVKWLQTITKLPILVKGV-LTAED-----VQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVR 286 (366)
Q Consensus 213 ~~~~i~~lr~~~~~pv~vK~v-~~~~d-----~~aGad~I~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~i~vi~~GGI~ 286 (366)
..+.++++++.++.|+-+-.. .+.++ .++|+|+|.++. +. . ......+..+++ . .+.+..+-+-.
T Consensus 49 ~~~~~~~i~~~~~~~~~v~l~v~d~~~~i~~~~~~g~d~v~vh~--~~-~---~~~~~~~~~~~~-~--~~~~g~~~~~~ 119 (220)
T PRK05581 49 GPPVVEAIRKVTKLPLDVHLMVENPDRYVPDFAKAGADIITFHV--EA-S---EHIHRLLQLIKS-A--GIKAGLVLNPA 119 (220)
T ss_pred CHHHHHHHHhcCCCcEEEEeeeCCHHHHHHHHHHcCCCEEEEee--cc-c---hhHHHHHHHHHH-c--CCEEEEEECCC
Confidence 567788888766544323221 23222 899999998854 21 0 112233333332 2 44444444566
Q ss_pred CHHHHHHHHHhCcCEEEecH
Q 017781 287 RGTDVFKALALGASGIFIGR 306 (366)
Q Consensus 287 ~~~dv~kalalGAd~V~igr 306 (366)
+..+..+.+..++|.+.++.
T Consensus 120 t~~e~~~~~~~~~d~i~~~~ 139 (220)
T PRK05581 120 TPLEPLEDVLDLLDLVLLMS 139 (220)
T ss_pred CCHHHHHHHHhhCCEEEEEE
Confidence 77888888888899988875
|
|
| >TIGR02320 PEP_mutase phosphoenolpyruvate phosphomutase | Back alignment and domain information |
|---|
Probab=80.79 E-value=13 Score=35.70 Aligned_cols=90 Identities=17% Similarity=0.198 Sum_probs=48.8
Q ss_pred HHHHHHHhcCCCEEEEec--cCHHH--------HHcCCcEEEEc--------CCCccCCC-CCcchHHHHHHHH---HH-
Q 017781 216 DVKWLQTITKLPILVKGV--LTAED--------VQAGAAGIIVS--------NHGARQLD-YVPATIMALEEVV---KA- 272 (366)
Q Consensus 216 ~i~~lr~~~~~pv~vK~v--~~~~d--------~~aGad~I~vs--------~~gg~~~~-~~~~~~~~l~~i~---~~- 272 (366)
.++.|...+++||++-.= .++.+ .++|+.+|.+= +|.|.... .-.+.-+.+..|+ ++
T Consensus 69 ~~~~I~~a~~~Pv~~D~d~Gg~~~~v~r~V~~l~~aGvaGi~iEDq~~pk~cg~~~~~~~~~l~s~ee~~~kI~Aa~~a~ 148 (285)
T TIGR02320 69 VVEFMFDVTTKPIILDGDTGGNFEHFRRLVRKLERRGVSAVCIEDKLGLKKNSLFGNDVAQPQASVEEFCGKIRAGKDAQ 148 (285)
T ss_pred HHHHHHhhcCCCEEEecCCCCCHHHHHHHHHHHHHcCCeEEEEeccCCCccccccCCCCcccccCHHHHHHHHHHHHHhc
Confidence 356666677899988721 34433 89999999981 12111100 1123333343443 33
Q ss_pred cCCCceEEEecCC----CCHHHHH---H-HHHhCcCEEEec
Q 017781 273 TQGRIPVFLDGGV----RRGTDVF---K-ALALGASGIFIG 305 (366)
Q Consensus 273 ~~~~i~vi~~GGI----~~~~dv~---k-alalGAd~V~ig 305 (366)
...+++|++--.- ..-++++ + +.++|||+|++-
T Consensus 149 ~~~~~~IiARTDa~~~~~~~~eAi~Ra~ay~eAGAD~ifv~ 189 (285)
T TIGR02320 149 TTEDFMIIARVESLILGKGMEDALKRAEAYAEAGADGIMIH 189 (285)
T ss_pred cCCCeEEEEecccccccCCHHHHHHHHHHHHHcCCCEEEec
Confidence 2346788775111 1233333 3 345899999985
|
A closely related enzyme, phosphonopyruvate hydrolase from Variovorax sp. Pal2, is excluded from this model. |
| >PRK05269 transaldolase B; Provisional | Back alignment and domain information |
|---|
Probab=80.74 E-value=59 Score=31.76 Aligned_cols=97 Identities=13% Similarity=0.205 Sum_probs=64.6
Q ss_pred CCHHHHHHHHHhc--CCCEEEEeccCHHH----HHcCCcEEEEcCCCccCCCC-------------CcchHHHHHHHHHH
Q 017781 212 LSWKDVKWLQTIT--KLPILVKGVLTAED----VQAGAAGIIVSNHGARQLDY-------------VPATIMALEEVVKA 272 (366)
Q Consensus 212 ~~~~~i~~lr~~~--~~pv~vK~v~~~~d----~~aGad~I~vs~~gg~~~~~-------------~~~~~~~l~~i~~~ 272 (366)
.+|+-++.++... ++++-+=.+.+.+. .++|++.|... -||-.|+ +.+.+..+.++.+.
T Consensus 135 aT~eGi~A~~~L~~~GI~vn~TlvFs~~Qa~~aa~AGa~~ISPf--VgRi~d~~~~~~~~~~~~~~~~~Gv~~v~~i~~~ 212 (318)
T PRK05269 135 STWEGIRAAEQLEKEGINCNLTLLFSFAQARACAEAGVFLISPF--VGRILDWYKKNTGKKEYAPAEDPGVVSVTKIYNY 212 (318)
T ss_pred CCHHHHHHHHHHHHcCCceeEeEecCHHHHHHHHHcCCCEEEee--ccHHHHHhhhcccccccCcCCCcHHHHHHHHHHH
Confidence 3565544444332 88998888999877 99999877642 2332111 33455556666554
Q ss_pred c---CCCceEEEecCCCCHHHHHHHHHhCcCEEEecHHHHHHhh
Q 017781 273 T---QGRIPVFLDGGVRRGTDVFKALALGASGIFIGRPVVYSLA 313 (366)
Q Consensus 273 ~---~~~i~vi~~GGI~~~~dv~kalalGAd~V~igr~~l~~l~ 313 (366)
. +.+..|++. .+|+..++.+ ..|+|.|-|.-.++..+.
T Consensus 213 ~k~~~~~t~im~A-Sfrn~~~v~~--laG~d~vTi~p~ll~~l~ 253 (318)
T PRK05269 213 YKKHGYKTVVMGA-SFRNTGQILE--LAGCDRLTISPALLEELA 253 (318)
T ss_pred HHHcCCCceEEee-ccCCHHHHHH--HhCCCeEECCHHHHHHHH
Confidence 4 234556664 6999999997 569999999988887765
|
|
| >COG5564 Predicted TIM-barrel enzyme, possibly a dioxygenase [General function prediction only] | Back alignment and domain information |
|---|
Probab=80.73 E-value=19 Score=33.28 Aligned_cols=74 Identities=22% Similarity=0.233 Sum_probs=41.1
Q ss_pred eccCHHH----HHcCCcEEEEcC---CCccC-CCCCcchH---HHHHHHHHH---cC-CCceEEEecCCCCHHHHHHHHH
Q 017781 232 GVLTAED----VQAGAAGIIVSN---HGARQ-LDYVPATI---MALEEVVKA---TQ-GRIPVFLDGGVRRGTDVFKALA 296 (366)
Q Consensus 232 ~v~~~~d----~~aGad~I~vs~---~gg~~-~~~~~~~~---~~l~~i~~~---~~-~~i~vi~~GGI~~~~dv~kala 296 (366)
-+.++++ .++|+|.|+.+- .||.- ...+.+.. +.+..+.++ ++ +-+++.--|=|.+++|..--+.
T Consensus 162 yV~s~~eAqa~~~aGadiiv~hmg~ttgG~Igar~~~Sl~~~vel~~~~~~aar~v~kd~i~l~~GGPi~~p~da~yi~d 241 (276)
T COG5564 162 YVFSFEEAQAMTKAGADIIVAHMGLTTGGLIGARSALSLADCVELIELAAEAARGVRKDVIPLCHGGPISMPEDARYILD 241 (276)
T ss_pred eecCHHHHHHHHHcCcceeeecccccccceeccccccCHHHHHHHHHHHHHHHhhhhhceeeeccCCCcCCchhhHHHHh
Confidence 3467776 899999998753 23321 11122221 222222222 22 2367777777999999875443
Q ss_pred --hCcCEEEec
Q 017781 297 --LGASGIFIG 305 (366)
Q Consensus 297 --lGAd~V~ig 305 (366)
-|+|+..=+
T Consensus 242 ~c~~~~gfyga 252 (276)
T COG5564 242 RCPGCDGFYGA 252 (276)
T ss_pred hCCCCCccccc
Confidence 477775433
|
|
| >TIGR01769 GGGP geranylgeranylglyceryl phosphate synthase | Back alignment and domain information |
|---|
Probab=80.67 E-value=15 Score=33.50 Aligned_cols=36 Identities=25% Similarity=0.410 Sum_probs=30.2
Q ss_pred CHHHHHHHHHhcCCCEEEEec-cCHHH----HHcCCcEEEE
Q 017781 213 SWKDVKWLQTITKLPILVKGV-LTAED----VQAGAAGIIV 248 (366)
Q Consensus 213 ~~~~i~~lr~~~~~pv~vK~v-~~~~d----~~aGad~I~v 248 (366)
+.+.++.+|+.++.|+++.+. .+.++ .++|||+|++
T Consensus 164 ~~e~i~~Vk~~~~~Pv~vGGGIrs~e~a~~l~~~GAD~VVV 204 (205)
T TIGR01769 164 NPETISLVKKASGIPLIVGGGIRSPEIAYEIVLAGADAIVT 204 (205)
T ss_pred CHHHHHHHHHhhCCCEEEeCCCCCHHHHHHHHHcCCCEEEe
Confidence 467899999999999999965 57766 5789999987
|
This model represents geranylgeranylglyceryl phosphate synthase which catalyzes the first committed step in the synthesis of ether-linked membrane lipids in archaea. The active enzyme is reported to be a homopentamer in Methanobacterium thermoautotrophicum but is reported to be a homodimer in Thermoplasma acidophilum. |
| >KOG4175 consensus Tryptophan synthase alpha chain [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=80.30 E-value=47 Score=30.35 Aligned_cols=46 Identities=28% Similarity=0.375 Sum_probs=35.2
Q ss_pred HHHHHHHHHcCCCceEEEecCCCCHHHHHHHHHhCcCEEEecHHHHHH
Q 017781 264 MALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFIGRPVVYS 311 (366)
Q Consensus 264 ~~l~~i~~~~~~~i~vi~~GGI~~~~dv~kalalGAd~V~igr~~l~~ 311 (366)
+.+.+++++. ++.|+.+-=||.+++++-..-.- ||+|.+|+.++.-
T Consensus 196 ~L~qrvrk~t-~dtPlAVGFGvst~EHf~qVgsv-aDGVvvGSkiv~l 241 (268)
T KOG4175|consen 196 SLLQRVRKAT-GDTPLAVGFGVSTPEHFKQVGSV-ADGVVVGSKIVKL 241 (268)
T ss_pred HHHHHHHHhc-CCCceeEeeccCCHHHHHhhhhh-ccceEecHHHHHH
Confidence 4556666665 47888887799999998765545 9999999988653
|
|
| >PRK12346 transaldolase A; Provisional | Back alignment and domain information |
|---|
Probab=80.13 E-value=17 Score=35.50 Aligned_cols=97 Identities=12% Similarity=0.190 Sum_probs=63.8
Q ss_pred CCHHHHHHHHHh--cCCCEEEEeccCHHH----HHcCCcEEEEcCCCccCCCC-------------CcchHHHHHHHHHH
Q 017781 212 LSWKDVKWLQTI--TKLPILVKGVLTAED----VQAGAAGIIVSNHGARQLDY-------------VPATIMALEEVVKA 272 (366)
Q Consensus 212 ~~~~~i~~lr~~--~~~pv~vK~v~~~~d----~~aGad~I~vs~~gg~~~~~-------------~~~~~~~l~~i~~~ 272 (366)
.+|+-++.++.. -++++-+-.+.+... .++|++.|.. .-||-.+| +.+....+.++.+.
T Consensus 134 aT~eGi~A~~~L~~~GI~~n~TliFS~~Qa~~aa~AGa~~ISP--fVgRi~d~~~~~~~~~~~~~~~~~Gv~~v~~i~~~ 211 (316)
T PRK12346 134 STWEGIRAAEELEKEGINCNLTLLFSFAQARACAEAGVFLISP--FVGRIYDWYQARKPMDPYVVEEDPGVKSVRNIYDY 211 (316)
T ss_pred CCHHHHHHHHHHHHCCCceeEEEecCHHHHHHHHHcCCCEEEe--cccHHHHhhhhccccccccccCCChHHHHHHHHHH
Confidence 467655544433 288988888999877 9999988753 32332221 33445555566554
Q ss_pred c---CCCceEEEecCCCCHHHHHHHHHhCcCEEEecHHHHHHhh
Q 017781 273 T---QGRIPVFLDGGVRRGTDVFKALALGASGIFIGRPVVYSLA 313 (366)
Q Consensus 273 ~---~~~i~vi~~GGI~~~~dv~kalalGAd~V~igr~~l~~l~ 313 (366)
. +.+..|++ ..+|+..++. ..+|+|.+-|.-.++..+.
T Consensus 212 ~k~~~~~T~Vm~-ASfRn~~qi~--alaG~d~lTi~p~ll~~L~ 252 (316)
T PRK12346 212 YKQHRYETIVMG-ASFRRTEQIL--ALAGCDRLTISPNLLKELQ 252 (316)
T ss_pred HHHcCCCcEEEe-cccCCHHHHH--HHhCCCEEeCCHHHHHHHH
Confidence 4 22444444 5599999998 3469999999988877664
|
|
| >cd04824 eu_ALAD_PBGS_cysteine_rich Porphobilinogen synthase (PBGS), which is also called delta-aminolevulinic acid dehydratase (ALAD), catalyzes the condensation of two 5-aminolevulinic acid (ALA) molecules to form the pyrrole porphobilinogen (PBG), which is the second step in the biosynthesis of tetrapyrroles, such as heme, vitamin B12 and chlorophyll | Back alignment and domain information |
|---|
Probab=80.09 E-value=20 Score=34.76 Aligned_cols=20 Identities=25% Similarity=0.214 Sum_probs=14.0
Q ss_pred HHHHHHHHHhc-CCCEEEEec
Q 017781 214 WKDVKWLQTIT-KLPILVKGV 233 (366)
Q Consensus 214 ~~~i~~lr~~~-~~pv~vK~v 233 (366)
++.|+.+|+.+ ++|+.+=.|
T Consensus 251 LDIi~~~k~~~~~~PvaaYqV 271 (320)
T cd04824 251 LDIVREAKDKHPDLPLAVYHV 271 (320)
T ss_pred HHHHHHHHHhccCCCEEEEEc
Confidence 45677777777 777776655
|
This reaction involves the formation of a Schiff base link between the substrate and the enzyme. PBGSs are metalloenzymes, some of which have a second, allosteric metal binding site, beside the metal ion binding site in their active site. Although PBGS is a family of homologous enzymes, its metal ion utilization at catalytic site varies between zinc and magnesium and/or potassium. PBGS can be classified into two groups based on differences in their active site metal binding site. The eukaryotic PBGSs represented by this model, which contain a cysteine-rich zinc binding motif (DXCXCX(Y/F)X3G(H/Q)CG), require zinc for their activity, they |
Homologous Structure Templates
Structure Templates Detected by BLAST
Original result of BLAST against Protein Data Bank
| ID | Alignment Graph | Length |
Definition |
E-value | |
| Query | 366 | ||||
| 1gox_A | 370 | Refined Structure Of Spinach Glycolate Oxidase At 2 | 0.0 | ||
| 1gyl_A | 369 | Involvement Of Tyr24 And Trp108 In Substrate Bindin | 0.0 | ||
| 1al7_A | 359 | Three-Dimensional Structures Of Glycolate Oxidase W | 0.0 | ||
| 2rdt_A | 387 | Crystal Structure Of Human Glycolate Oxidase (Go) I | 1e-109 | ||
| 2nzl_A | 392 | Crystal Structure Of Human Hydroxyacid Oxidase 1 Le | 1e-109 | ||
| 2w0u_A | 370 | Crystal Structure Of Human Glycolate Oxidase In Com | 1e-109 | ||
| 1tb3_A | 352 | Crystal Structure Analysis Of Recombinant Rat Kidne | 3e-78 | ||
| 2a7n_A | 380 | Crystal Structure Of The G81a Mutant Of The Active | 9e-77 | ||
| 1huv_A | 380 | Crystal Structure Of A Soluble Mutant Of The Membra | 3e-76 | ||
| 3sgz_A | 352 | High Resolution Crystal Structure Of Rat Long Chain | 5e-76 | ||
| 1qcw_A | 410 | Flavocytochrome B2, Arg289lys Mutant Length = 410 | 6e-71 | ||
| 1kbj_A | 412 | Crystallographic Study Of The Recombinant Flavin-Bi | 3e-70 | ||
| 1fcb_A | 511 | Molecular Structure Of Flavocytochrome B2 At 2.4 An | 4e-70 | ||
| 1ltd_A | 506 | The 2.6 Angstroms Refined Structure Of The Escheric | 4e-70 | ||
| 1ldc_A | 511 | X-Ray Structure Of Two Complexes Of The Y143f Flavo | 1e-69 | ||
| 1sze_A | 511 | L230a Mutant Flavocytochrome B2 With Benzoylformate | 2e-69 | ||
| 2oz0_A | 511 | Mechanistic And Structural Studies Of H373q Flavocy | 3e-69 | ||
| 1szf_A | 511 | A198g:l230a Mutant Flavocytochrome B2 With Pyruvate | 4e-69 | ||
| 2cdh_0 | 226 | Architecture Of The Thermomyces Lanuginosus Fungal | 2e-59 | ||
| 2j6x_A | 374 | The Crystal Structure Of Lactate Oxidase Length = 3 | 3e-51 | ||
| 2du2_A | 374 | Crystal Structure Analysis Of The L-Lactate Oxidase | 2e-50 | ||
| 2nli_A | 368 | Crystal Structure Of The Complex Between L-Lactate | 2e-50 | ||
| 1p0k_A | 349 | Ipp:dmapp Isomerase Type Ii Apo Structure Length = | 8e-05 | ||
| 3ffs_A | 400 | The Crystal Structure Of Cryptosporidium Parvum Ino | 8e-04 |
| >pdb|1GOX|A Chain A, Refined Structure Of Spinach Glycolate Oxidase At 2 Angstroms Resolution Length = 370 | Back alignment and structure |
|
| >pdb|1GYL|A Chain A, Involvement Of Tyr24 And Trp108 In Substrate Binding And Substrate Specificity Of Glycolate Oxidase Length = 369 | Back alignment and structure |
|
| >pdb|1AL7|A Chain A, Three-Dimensional Structures Of Glycolate Oxidase With Bound Active- Site Inhibitors Length = 359 | Back alignment and structure |
|
| >pdb|2RDT|A Chain A, Crystal Structure Of Human Glycolate Oxidase (Go) In Complex With Cdst Length = 387 | Back alignment and structure |
|
| >pdb|2NZL|A Chain A, Crystal Structure Of Human Hydroxyacid Oxidase 1 Length = 392 | Back alignment and structure |
|
| >pdb|2W0U|A Chain A, Crystal Structure Of Human Glycolate Oxidase In Complex With The Inhibitor 5-[(4-Chlorophenyl)sulfanyl]- 1,2,3-Thiadiazole-4-Carboxylate. Length = 370 | Back alignment and structure |
|
| >pdb|1TB3|A Chain A, Crystal Structure Analysis Of Recombinant Rat Kidney Long- Chain Hydroxy Acid Oxidase Length = 352 | Back alignment and structure |
|
| >pdb|2A7N|A Chain A, Crystal Structure Of The G81a Mutant Of The Active Chimera Of (S)- Mandelate Dehydrogenase Length = 380 | Back alignment and structure |
|
| >pdb|1HUV|A Chain A, Crystal Structure Of A Soluble Mutant Of The Membrane-Associated (S)- Mandelate Dehydrogenase From Pseudomonas Putida At 2.15a Resolution Length = 380 | Back alignment and structure |
|
| >pdb|3SGZ|A Chain A, High Resolution Crystal Structure Of Rat Long Chain Hydroxy Acid Oxidase In Complex With The Inhibitor 4-Carboxy-5-[(4-Chiorophenyl) Sulfanyl]-1, 2, 3-Thiadiazole. Length = 352 | Back alignment and structure |
|
| >pdb|1QCW|A Chain A, Flavocytochrome B2, Arg289lys Mutant Length = 410 | Back alignment and structure |
|
| >pdb|1KBJ|A Chain A, Crystallographic Study Of The Recombinant Flavin-Binding Domain Of Baker's Yeast Flavocytochrome B2: Comparison With The Intact Wild- Type Enzyme Length = 412 | Back alignment and structure |
|
| >pdb|1FCB|A Chain A, Molecular Structure Of Flavocytochrome B2 At 2.4 Angstroms Resolution Length = 511 | Back alignment and structure |
|
| >pdb|1LTD|A Chain A, The 2.6 Angstroms Refined Structure Of The Escherichia Coli Recombinant Saccharomyces Cerevisiae Flavocytochrome B2-Sulphite Complex Length = 506 | Back alignment and structure |
|
| >pdb|1LDC|A Chain A, X-Ray Structure Of Two Complexes Of The Y143f Flavocytochrome B2 Mutant Crystallized In The Presence Of Lactate Or Phenyl-Lactate Length = 511 | Back alignment and structure |
|
| >pdb|1SZE|A Chain A, L230a Mutant Flavocytochrome B2 With Benzoylformate Length = 511 | Back alignment and structure |
|
| >pdb|2OZ0|A Chain A, Mechanistic And Structural Studies Of H373q Flavocytochrome B2: Effects Of Mutating The Active Site Base Length = 511 | Back alignment and structure |
|
| >pdb|1SZF|A Chain A, A198g:l230a Mutant Flavocytochrome B2 With Pyruvate Bound Length = 511 | Back alignment and structure |
|
| >pdb|2CDH|0 Chain 0, Architecture Of The Thermomyces Lanuginosus Fungal Fatty Acid Synthase At 5 Angstrom Resolution. Length = 226 | Back alignment and structure |
|
| >pdb|2J6X|A Chain A, The Crystal Structure Of Lactate Oxidase Length = 374 | Back alignment and structure |
|
| >pdb|2DU2|A Chain A, Crystal Structure Analysis Of The L-Lactate Oxidase Length = 374 | Back alignment and structure |
|
| >pdb|2NLI|A Chain A, Crystal Structure Of The Complex Between L-Lactate Oxidase And A Substrate Analogue At 1.59 Angstrom Resolution Length = 368 | Back alignment and structure |
|
| >pdb|1P0K|A Chain A, Ipp:dmapp Isomerase Type Ii Apo Structure Length = 349 | Back alignment and structure |
|
| >pdb|3FFS|A Chain A, The Crystal Structure Of Cryptosporidium Parvum Inosine-5'- Monophosphate Dehydrogenase Length = 400 | Back alignment and structure |
|
Structure Templates Detected by RPS-BLAST
Original result of RPS-BLAST against PDB70 database
| >1gox_A (S)-2-hydroxy-acid oxidase, peroxisomal; oxidoreductase (oxygen(A)); HET: FMN; 2.00A {Spinacia oleracea} SCOP: c.1.4.1 PDB: 1gyl_A* 1al8_A* 1al7_A* 2cdh_0 Length = 370 | Back alignment and structure |
|---|
Score = 637 bits (1646), Expect = 0.0
Identities = 323/368 (87%), Positives = 344/368 (93%), Gaps = 4/368 (1%)
Query: 3 EITNVMEYEAIAKEKLPKMVFDYYASGAEDQWTLQENRNAFSRILFRPRILIDVSKIDMN 62
EITNV EYEAIAK+KLPKMV+DYYASGAEDQWTL ENRNAFSRILFRPRILIDV+ IDM
Sbjct: 3 EITNVNEYEAIAKQKLPKMVYDYYASGAEDQWTLAENRNAFSRILFRPRILIDVTNIDMT 62
Query: 63 TTVLGFKISMPIMIAPTAMQKMAHPEGEYATARAASAAGTIMTLSSWSTSSVEEVASTGP 122
TT+LGFKISMPIMIAPTAMQKMAHPEGEYATARAASAAGTIMTLSSW+TSSVEEVASTGP
Sbjct: 63 TTILGFKISMPIMIAPTAMQKMAHPEGEYATARAASAAGTIMTLSSWATSSVEEVASTGP 122
Query: 123 GIRFFQLYVYKDRNVVAQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLTLK 182
GIRFFQLYVYKDRNVVAQLVRRAERAGFKAIALTVDTPRLGRREADIKNRF LPPFLTLK
Sbjct: 123 GIRFFQLYVYKDRNVVAQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFVLPPFLTLK 182
Query: 183 NFQGLDLGKMDEANDSGLAAYVAGQIDRSLSWKDVKWLQTITKLPILVKGVLTAED---- 238
NF+G+DLGKMD+ANDSGL++YVAGQIDRSLSWKDV WLQTIT LPILVKGV+TAED
Sbjct: 183 NFEGIDLGKMDKANDSGLSSYVAGQIDRSLSWKDVAWLQTITSLPILVKGVITAEDARLA 242
Query: 239 VQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALG 298
VQ GAAGIIVSNHGARQLDYVPATIMALEEVVKA QGRIPVFLDGGVRRGTDVFKALALG
Sbjct: 243 VQHGAAGIIVSNHGARQLDYVPATIMALEEVVKAAQGRIPVFLDGGVRRGTDVFKALALG 302
Query: 299 ASGIFIGRPVVYSLAAEGEKGVRRVLEMLREEFELAMALSGCRSLKEITRDHIVTEWDAS 358
A+G+FIGRPVV+SLAAEGE GV++VL+M+R+EFEL MALSGCRSLKEI+R HI +WD
Sbjct: 303 AAGVFIGRPVVFSLAAEGEAGVKKVLQMMRDEFELTMALSGCRSLKEISRSHIAADWDGP 362
Query: 359 LPRPVPRL 366
R V RL
Sbjct: 363 SSRAVARL 370
|
| >2nzl_A Hydroxyacid oxidase 1; HAOX1, glycolate oxidase, GOX, GOX1, structural genomics, structural genom consortium, SGC, oxidoreductase; HET: FMN; 1.35A {Homo sapiens} PDB: 2rdu_A* 2rdt_A* 2rdw_A* 2w0u_A* Length = 392 | Back alignment and structure |
|---|
Score = 595 bits (1536), Expect = 0.0
Identities = 203/374 (54%), Positives = 269/374 (71%), Gaps = 13/374 (3%)
Query: 1 MGEITNVMEYEAIAKEKLPKMVFDYYASGAEDQWTLQENRNAFSRILFRPRILIDVSKID 60
+ + + +YE AK LPK ++DYY SGA D+ TL +N AFSR PR+L +V++ D
Sbjct: 24 LPRLICINDYEQHAKSVLPKSIYDYYRSGANDEETLADNIAAFSRWKLYPRMLRNVAETD 83
Query: 61 MNTTVLGFKISMPIMIAPTAMQKMAHPEGEYATARAASAAGTIMTLSSWSTSSVEEVAST 120
++T+VLG ++SMPI + TAMQ+MAH +GE AT RA + GT M LSSW+TSS+EEVA
Sbjct: 84 LSTSVLGQRVSMPICVGATAMQRMAHVDGELATVRACQSLGTGMMLSSWATSSIEEVAEA 143
Query: 121 GP-GIRFFQLYVYKDRNVVAQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFTLPPFL 179
GP +R+ QLY+YKDR V +LVR+AE+ G+KAI +TVDTP LG R D++NRF LPP L
Sbjct: 144 GPEALRWLQLYIYKDREVTKKLVRQAEKMGYKAIFVTVDTPYLGNRLDDVRNRFKLPPQL 203
Query: 180 TLKNFQGLDLGKMDEAN---DSGLAAYVAGQIDRSLSWKDVKWLQTITKLPILVKGVLTA 236
+KNF+ L E N DSGLAAYVA ID S+SW+D+KWL+ +T LPI+ KG+L
Sbjct: 204 RMKNFETSTLSFSPEENFGDDSGLAAYVAKAIDPSISWEDIKWLRRLTSLPIVAKGILRG 263
Query: 237 ED----VQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVF 292
+D V+ G GI+VSNHGARQLD VPATI L E+V+A +G++ VFLDGGVR+GTDV
Sbjct: 264 DDAREAVKHGLNGILVSNHGARQLDGVPATIDVLPEIVEAVEGKVEVFLDGGVRKGTDVL 323
Query: 293 KALALGASGIFIGRPVVYSLAAEGEKGVRRVLEMLREEFELAMALSGCRSLKEITRDHIV 352
KALALGA +F+GRP+V+ LA +GEKGV+ VLE+L+EEF LAMALSGC+++K I + +
Sbjct: 324 KALALGAKAVFVGRPIVWGLAFQGEKGVQDVLEILKEEFRLAMALSGCQNVKVIDKTLVR 383
Query: 353 TEWDASLPRPVPRL 366
P V ++
Sbjct: 384 KN-----PLAVSKI 392
|
| >1p4c_A L(+)-mandelate dehydrogenase; TIM barrel, hydroxy acid oxidizing enzyme, oxidoreductase; HET: FMN MES; 1.35A {Pseudomonas putida} SCOP: c.1.4.1 PDB: 1huv_A* 1p5b_A* 3giy_A* 2a7p_A* 2a85_A* 2a7n_A* Length = 380 | Back alignment and structure |
|---|
Score = 578 bits (1492), Expect = 0.0
Identities = 150/367 (40%), Positives = 225/367 (61%), Gaps = 10/367 (2%)
Query: 3 EITNVMEYEAIAKEKLPKMVFDYYASGAEDQWTLQENRNAFSRILFRPRILIDVSKIDMN 62
+ NV +Y +A+++LPKMV+DY GAED++ ++ NR+ F + F+P+ L+DVS+ +
Sbjct: 4 NLFNVEDYRKLAQKRLPKMVYDYLEGGAEDEYGVKHNRDVFQQWRFKPKRLVDVSRRSLQ 63
Query: 63 TTVLGFKISMPIMIAPTAMQKMAHPEGEYATARAASAAGTIMTLSSWSTSSVEEVASTGP 122
VLG + SMP++I PT + P+G+ A ARAA+ AG LS+ S S+E++A
Sbjct: 64 AEVLGKRQSMPLLIGPTGLNGALWPKGDLALARAATKAGIPFVLSTASNMSIEDLARQCD 123
Query: 123 GIRFFQLYVYKDRNVVAQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLTLK 182
G +FQLYV R + +V +A G+ + LT D G RE D+ NRF +PPFLTLK
Sbjct: 124 GDLWFQLYVIH-REIAQGMVLKALHTGYTTLVLTTDVAVNGYRERDLHNRFKIPPFLTLK 182
Query: 183 NFQGLDLGKMDEANDSGLAAYVAGQIDRSLSWKDVKWLQTITKLPILVKGVLTAED---- 238
NF+G+DLGKMD+AN AA ++ Q+D S +W+ ++WL+ + +LVKG+L+AED
Sbjct: 183 NFEGIDLGKMDKANLEMQAALMSRQMDASFNWEALRWLRDLWPHKLLVKGLLSAEDADRC 242
Query: 239 VQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALG 298
+ GA G+I+SNHG RQLD + + L + V PV +D G RRG+D+ KALALG
Sbjct: 243 IAEGADGVILSNHGGRQLDCAISPMEVLAQSVAK--TGKPVLIDSGFRRGSDIVKALALG 300
Query: 299 ASGIFIGRPVVYSLAAEGEKGVRRVLEMLREEFELAMALSGCRSLKEITRDHIVTEWDAS 358
A + +GR +Y LAA GE GV VL +L+ + + +A GC + ++ D++ E
Sbjct: 301 AEAVLLGRATLYGLAARGETGVDEVLTLLKADIDRTLAQIGCPDITSLSPDYLQNE---G 357
Query: 359 LPRPVPR 365
+ P
Sbjct: 358 VTNTAPV 364
|
| >3sgz_A Hydroxyacid oxidase 2; flavoprotein, homology, INH oxidoreductase-oxidoreductase inhibitor complex; HET: FMN HO6; 1.35A {Rattus norvegicus} PDB: 1tb3_A* Length = 352 | Back alignment and structure |
|---|
Score = 575 bits (1484), Expect = 0.0
Identities = 155/356 (43%), Positives = 221/356 (62%), Gaps = 12/356 (3%)
Query: 4 ITNVMEYEAIAKEKLPKMVFDYYASGAEDQWTLQENRNAFSRILFRPRILIDVSKIDMNT 63
+ + +++A A+++L K +D+ A+D T EN AF RI RPR L D+SK+D T
Sbjct: 2 LVCLADFKAHAQKQLSKTSWDFIEGEADDGITYSENIAAFKRIRLRPRYLRDMSKVDTRT 61
Query: 64 TVLGFKISMPIMIAPTAMQKMAHPEGEYATARAASAAGTIMTLSSWSTSSVEEVASTGP- 122
T+ G +IS PI I+PTA +A P+GE +TARAA A +SS+++ S+E++ + P
Sbjct: 62 TIQGQEISAPICISPTAFHSIAWPDGEKSTARAAQEANICYVISSYASYSLEDIVAAAPE 121
Query: 123 GIRFFQLYVYKDRNVVAQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLTLK 182
G R+FQLY+ D + Q+V+RAE GFKA+ +T+DTP LG R D +N+ L +
Sbjct: 122 GFRWFQLYMKSDWDFNKQMVQRAEALGFKALVITIDTPVLGNRRRDKRNQLNLEANILKA 181
Query: 183 NFQGLDLGKMDEANDSGLAAYVAGQIDRSLSWKDVKWLQTITKLPILVKGVLTAED---- 238
+ L + + S W D+ LQ+IT+LPI++KG+LT ED
Sbjct: 182 ALRALK-------EEKPTQSVPVLFPKASFCWNDLSLLQSITRLPIILKGILTKEDAELA 234
Query: 239 VQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALG 298
++ GI+VSNHG RQLD V A+I AL EVV A +G+I V++DGGVR GTDV KALALG
Sbjct: 235 MKHNVQGIVVSNHGGRQLDEVSASIDALREVVAAVKGKIEVYMDGGVRTGTDVLKALALG 294
Query: 299 ASGIFIGRPVVYSLAAEGEKGVRRVLEMLREEFELAMALSGCRSLKEITRDHIVTE 354
A IF+GRP+++ LA +GE GV+ VL++L E M LSGC+S+ EI+ D I
Sbjct: 295 ARCIFLGRPILWGLACKGEDGVKEVLDILTAELHRCMTLSGCQSVAEISPDLIQFS 350
|
| >2nli_A Lactate oxidase; flavoenzyme, FMN, D-lactate, oxidoreducta; HET: FMN; 1.59A {Aerococcus viridans} PDB: 2zfa_A* 2du2_A* 2e77_A* 2j6x_A* Length = 368 | Back alignment and structure |
|---|
Score = 572 bits (1477), Expect = 0.0
Identities = 117/357 (32%), Positives = 190/357 (53%), Gaps = 11/357 (3%)
Query: 3 EITNVMEYEAIAKEKLPKMVFDYYASGAEDQWTLQENRNAFSRILFRPRILIDVSKIDMN 62
++ N + E A + +P F+Y A + D+WT + N A+ L PR+ DV D +
Sbjct: 12 DVVNTYDLEEEASKVVPHGGFNYIAGASGDEWTKRANDRAWKHKLLYPRLAQDVEAPDTS 71
Query: 63 TTVLGFKISMPIMIAPTAMQKMAHPEGEYATARAASAAGTIMTLSSWSTSSVEEVASTGP 122
T +LG KI P ++AP A +AH E TARA S GTIM++S++S ++ EE++
Sbjct: 72 TEILGHKIKAPFIMAPIAAHGLAHTTKEAGTARAVSEFGTIMSISAYSGATFEEISEGLN 131
Query: 123 -GIRFFQLYVYKDRNVVAQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLTL 181
G R+FQ+Y+ KD ++ A+ G AI LT D+ G R+ D+KN+F P + +
Sbjct: 132 GGPRWFQIYMAKDDQQNRDILDEAKSDGATAIILTADSTVSGNRDRDVKNKFVYPFGMPI 191
Query: 182 KNFQGLDLGKMDEANDSGLAAYVAGQIDRSLSWKDVKWLQTITKLPILVKGVLTAED--- 238
+ + + G + +S +D++ + + LP+ VKG+ ED
Sbjct: 192 VQR------YLRGTAEGMSLNNIYGASKQKISPRDIEEIAGHSGLPVFVKGIQHPEDADM 245
Query: 239 -VQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALAL 297
++ GA+GI VSNHGARQL P + L + + R+P+ D GVRRG V KALA
Sbjct: 246 AIKRGASGIWVSNHGARQLYEAPGSFDTLPAIAERVNKRVPIVFDSGVRRGEHVAKALAS 305
Query: 298 GASGIFIGRPVVYSLAAEGEKGVRRVLEMLREEFELAMALSGCRSLKEITRDHIVTE 354
GA + +GRPV++ LA G +G VL+ +++ M L+G ++++++ +
Sbjct: 306 GADVVALGRPVLFGLALGGWQGAYSVLDYFQKDLTRVMQLTGSQNVEDLKGLDLFDN 362
|
| >1kbi_A Cytochrome B2, L-LCR; flavocytochrome B2, electron transfer, oxidoreductase; HET: HEM FMN; 2.30A {Saccharomyces cerevisiae} SCOP: c.1.4.1 d.120.1.1 PDB: 1fcb_A* 1lco_A* 1ldc_A* 1sze_A* 2oz0_A* 1szf_A* 1szg_A* 1ltd_A* 1kbj_A* 1qcw_A* 3ks0_A* Length = 511 | Back alignment and structure |
|---|
Score = 558 bits (1439), Expect = 0.0
Identities = 138/380 (36%), Positives = 218/380 (57%), Gaps = 21/380 (5%)
Query: 1 MGEITNVMEYEAIAKEKLPKMVFDYYASGAEDQWTLQENRNAFSRILFRPRILIDVSKID 60
+ I N+ ++E +A + L K + YY+SGA D+ T +EN NA+ RI F+P+IL+DV K+D
Sbjct: 119 LDNIINLYDFEYLASQTLTKQAWAYYSSGANDEVTHRENHNAYHRIFFKPKILVDVRKVD 178
Query: 61 MNTTVLGFKISMPIMIAPTAMQKMAHP---EGEYATARAASAAGTIMTLSSWSTSSVEEV 117
++T +LG + +P ++ TA+ K+ +P E + A +S+ ++ S EE+
Sbjct: 179 ISTDMLGSHVDVPFYVSATALCKLGNPLEGEKDVARGCGQGVTKVPQMISTLASCSPEEI 238
Query: 118 ASTGPG---IRFFQLYVYKDRNVVAQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFT 174
P I+++QLYV DR + LV+ E+ G KA+ +TVD P LG+RE D+K +F+
Sbjct: 239 IEAAPSDKQIQWYQLYVNSDRKITDDLVKNVEKLGVKALFVTVDAPSLGQREKDMKLKFS 298
Query: 175 LPPFLTLKNFQGLDLGKMDEANDSGLAAYVAGQIDRSLSWKDVKWLQTITKLPILVKGVL 234
+ + G + ++ ID SL+WKD++ L+ TKLPI++KGV
Sbjct: 299 NTKAGPKAMKKT------NVEESQGASRALSKFIDPSLTWKDIEELKKKTKLPIVIKGVQ 352
Query: 235 TAED----VQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQ-----GRIPVFLDGGV 285
ED + G +G+++SNHG RQLD+ A I L E + + ++ VF+DGGV
Sbjct: 353 RTEDVIKAAEIGVSGVVLSNHGGRQLDFSRAPIEVLAETMPILEQRNLKDKLEVFVDGGV 412
Query: 286 RRGTDVFKALALGASGIFIGRPVVYSLAAEGEKGVRRVLEMLREEFELAMALSGCRSLKE 345
RRGTDV KAL LGA G+ +GRP +Y+ + G GV + +E+LR+E E++M L G S+ E
Sbjct: 413 RRGTDVLKALCLGAKGVGLGRPFLYANSCYGRNGVEKAIEILRDEIEMSMRLLGVTSIAE 472
Query: 346 ITRDHIVTEWDASLPRPVPR 365
+ D + + VP
Sbjct: 473 LKPDLLDLSTLKARTVGVPN 492
|
| >3sr7_A Isopentenyl-diphosphate delta-isomerase; isopentenyl pyrophosphate isomerase, TIM-barrel; 2.04A {Streptococcus mutans} Length = 365 | Back alignment and structure |
|---|
Score = 285 bits (732), Expect = 1e-94
Identities = 59/375 (15%), Positives = 117/375 (31%), Gaps = 67/375 (17%)
Query: 4 ITNVMEYEAIAKEKLPKMVFDYYASGAEDQWTLQENRNAFSRILFRPRIL--IDVSKIDM 61
+ ++ + + + + D+ A D + N+F I L D+++ID+
Sbjct: 21 MASMTGGQQMGRGSMTNRKDDHI-KYALDY---RSPYNSFDDIELIHHSLPDYDLAEIDL 76
Query: 62 NTTVLGFKISMPIMIAPTAMQKMAHPEGEYATARAASAAGTIMTLSSWSTSSVEEVASTG 121
+T G P I E A+ A G + S
Sbjct: 77 STHFAGQDFDFPFYINAMTGGSQKGKEVNEKLAQVADTCGLLFVTGS------------- 123
Query: 122 PGIRFFQLYVYKDRNVVAQLVRRAERAGFKAIALTVDTPRLGRREA-DIKNRFTLPPFLT 180
K+ + + V+++ A + +D P +A L +
Sbjct: 124 ------YSTALKNPDDTSYQVKKSRPHLLLATNIGLDKPYQAGLQAVRDLQPLFLQVHIN 177
Query: 181 LKNFQGLDLGKMDEANDSGLAAYVAGQIDRSLSWKD-VKWLQTITKLPILVKGVLTAED- 238
L + G+ + SWK + +LP ++K V D
Sbjct: 178 LMQELLMPEGERE-----------------FRSWKKHLSDYAKKLQLPFILKEVGFGMDV 220
Query: 239 ------VQAGAAGIIVSNHGARQLDYVPA---------------TIMALEEVVKATQGRI 277
+ G + +S G Y+ T L + ++
Sbjct: 221 KTIQTAIDLGVKTVDISGRGGTSFAYIENRRGGNRSYLNQWGQTTAQVLLNA-QPLMDKV 279
Query: 278 PVFLDGGVRRGTDVFKALALGASGIFIGRPVVYSLAAEGEKGVRRVLEMLREEFELAMAL 337
+ GG+R D+ KAL LGA + + R ++ + V ++ +E+ L M
Sbjct: 280 EILASGGIRHPLDIIKALVLGAKAVGLSRTMLELVEQHSVHEVIAIVNGWKEDLRLIMCA 339
Query: 338 SGCRSLKEITRDHIV 352
C+++ E+ +
Sbjct: 340 LNCQTIAELRNVDYL 354
|
| >1p0k_A Isopentenyl-diphosphate delta-isomerase; terpene biosynthesis, dimethylallyl diphosphate, flavoprotein; 1.90A {Bacillus subtilis} SCOP: c.1.4.1 PDB: 1p0n_A* Length = 349 | Back alignment and structure |
|---|
Score = 258 bits (660), Expect = 5e-84
Identities = 66/349 (18%), Positives = 128/349 (36%), Gaps = 61/349 (17%)
Query: 35 TLQENRNAFSRILFRPRIL--IDVSKIDMNTTVLGFKISMPIMIAP-TAMQKMAHPEGEY 91
Q+ I F L + + ++D++T + S PI I T E
Sbjct: 17 IGQKRETGLDDITFVHVSLPDLALEQVDISTKIGELSSSSPIFINAMTGGGGKLTYEINK 76
Query: 92 ATARAASAAGTIMTLSSWSTSSVEEVASTGPGIRFFQLYVYKDRNVVAQLVRRAERAGFK 151
+ ARAAS AG + + S ++ + ++VR+ G
Sbjct: 77 SLARAASQAGIPLAVGSQMSALKDPSERLS-----------------YEIVRKENPNGLI 119
Query: 152 AIALTVDTPRLGRREA-DIKNRFTLPPFLTLKNFQGLDLGKMDEANDSGLAAYVAGQIDR 210
L + +EA ++ L + L + E G
Sbjct: 120 FANLGSEATAAQAKEAVEMIGANALQ----------IHLNVIQEIVMPE------GDRSF 163
Query: 211 SLSWKDVKWLQTITKLPILVKGVLTAED-------VQAGAAGIIVSNHGARQLDYVP--- 260
S + K ++ + + +P++VK V +AGAA + + +G +
Sbjct: 164 SGALKRIEQICSRVSVPVIVKEVGFGMSKASAGKLYEAGAAAVDIGGYGGTNFSKIENLR 223
Query: 261 -------------ATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFIGRP 307
+T +L E+ + GG++ DV KA+ALGAS +
Sbjct: 224 RQRQISFFNSWGISTAASLAEIRSE-FPASTMIASGGLQDALDVAKAIALGASCTGMAGH 282
Query: 308 VVYSLAAEGEKGVRRVLEMLREEFELAMALSGCRSLKEITRDHIVTEWD 356
+ +L GE+G+ ++++ EE +L M + G R++ ++ + +V + +
Sbjct: 283 FLKALTDSGEEGLLEEIQLILEELKLIMTVLGARTIADLQKAPLVIKGE 331
|
| >3vkj_A Isopentenyl-diphosphate delta-isomerase; type 2 isopentenyl diphosphate isomerase; HET: FNR; 1.70A {Sulfolobus shibatae} PDB: 2zrv_A* 2zrw_A* 2zrx_A* 2zry_A* 2zrz_A* 3b03_A* 3b04_A* 3b05_A* 3b06_A* 2zru_A* Length = 368 | Back alignment and structure |
|---|
Score = 225 bits (575), Expect = 4e-71
Identities = 56/362 (15%), Positives = 112/362 (30%), Gaps = 62/362 (17%)
Query: 24 DYYASGAEDQWTLQENRNAFSRILFRPRIL--IDVSKIDMNTTVLGFKISMPIMIAP-TA 80
++ A + + + ++ + I S+I+ T +IS+P+M+ T
Sbjct: 10 EHVEIAAFENVDGLSSSTFLNDVILVHQGFPGISFSEINTKTKFFRKEISVPVMVTGMTG 69
Query: 81 MQKMAHPEGEYATARAASAAGTIMTLSSWSTSSVEEVASTGPGIRFFQLYVYKDRNVVAQ 140
+ A A G M + S + + A
Sbjct: 70 GRNELG-RINKIIAEVAEKFGIPMGVGSQRVAIEKAEARES-----------------FA 111
Query: 141 LVRRAERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLTLKNFQGLDLGKMDEANDSGL 200
+VR+ L + G + ++ + + + +
Sbjct: 112 IVRKVAPTIPIIANLGMPQLVKGYGLKEFQDAIQMIEADAIA---------VHLNPAQEV 162
Query: 201 AAYVAGQIDRSLSWKDVKWLQTITKLPILVKGVLTAED-------VQAGAAGIIVSNHG- 252
+ + + ++ + +PI+VK G S G
Sbjct: 163 FQPEGEPEYQIYALEKLRDISKELSVPIIVKESGNGISMETAKLLYSYGIKNFDTSGQGG 222
Query: 253 ----------------------ARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTD 290
LD+ T ++ EV + + GG+R G D
Sbjct: 223 TNWIAIEMIRDIRRGNWKAESAKNFLDWGVPTAASIMEVRYSVPD-SFLVGSGGIRSGLD 281
Query: 291 VFKALALGASGIFIGRPVVYSLAAEGEKGVRRVLEMLREEFELAMALSGCRSLKEITRDH 350
KA+ALGA + PV+ S A EG++ + + + E + AM L+G + + + +
Sbjct: 282 AAKAIALGADIAGMALPVLKS-AIEGKESLEQFFRKIIFELKAAMMLTGSKDVDALKKTS 340
Query: 351 IV 352
IV
Sbjct: 341 IV 342
|
| >1vcf_A Isopentenyl-diphosphate delta-isomerase; TIM barrel, structural genomics, riken structural genomics/P initiative, RSGI; HET: FMN; 2.60A {Thermus thermophilus} SCOP: c.1.4.1 PDB: 1vcg_A* 3dh7_A* Length = 332 | Back alignment and structure |
|---|
Score = 177 bits (449), Expect = 9e-53
Identities = 70/347 (20%), Positives = 106/347 (30%), Gaps = 60/347 (17%)
Query: 29 GAEDQWTLQENRNAFSRILFRPRIL--IDVSKIDMNTTVLGFKISMPIMIAPTAMQKMAH 86
E + Q+ R + L + +S++D+ T LG + P +I +
Sbjct: 14 CLEGEVAYQKTTTGLEGFRLRYQALAGLALSEVDLTTPFLGKTLKAPFLIGAMTGGEENG 73
Query: 87 PEGEYATARAASAAGTIMTLSSWSTSSVEEVASTGPGIRFFQLYVYKDRNVVAQLVRRAE 146
A A AA A G M L S A +R V ++A L
Sbjct: 74 ERINLALAEAAEALGVGMMLGSGRILLERPEALRSFRVR----KVAPKALLIANL----- 124
Query: 147 RAGFKAIALTVDTPRLGRREADIKNRFTLPPFLTLKNFQGLDLGKMDEANDSGLAAYVAG 206
L R ++ L + + EA G +
Sbjct: 125 ----GLAQLRRYGRDDLLRLVEMLEADALA----------FHVNPLQEAVQRGDTDFR-- 168
Query: 207 QIDRSLSWKDVKWLQTITKLPILVKGVLTAED-------VQAGAAGIIVSNHGARQLDYV 259
+ P++VK V A + V+ G V
Sbjct: 169 ------GLVERLAELLPLPFPVMVKEVGHGLSREAALALRDLPLAAVDVAGAGGTSWARV 222
Query: 260 PA------------------TIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASG 301
T A+ EV + +P+ GGV GTD KALALGA
Sbjct: 223 EEWVRFGEVRHPELCEIGIPTARAILEV-REVLPHLPLVASGGVYTGTDGAKALALGADL 281
Query: 302 IFIGRPVVYSLAAEGEKGVRRVLEMLREEFELAMALSGCRSLKEITR 348
+ + RP++ A EG + V + EE A+ G R+ KE
Sbjct: 282 LAVARPLLR-PALEGAERVAAWIGDYLEELRTALFAIGARNPKEARG 327
|
| >2qr6_A IMP dehydrogenase/GMP reductase; NP_599840.1, G reductase domain, structural genomics, joint center for STR genomics, JCSG; HET: MSE; 1.50A {Corynebacterium glutamicum atcc 13032} Length = 393 | Back alignment and structure |
|---|
Score = 46.4 bits (110), Expect = 8e-06
Identities = 50/276 (18%), Positives = 85/276 (30%), Gaps = 39/276 (14%)
Query: 54 IDVSKIDMNTTVLGFKISMPIMIAPTAMQKMAHPEGEYATARAASAAGTIMTLSSWSTSS 113
+D + +K +P M P +A E+ ++
Sbjct: 50 RSSKDVDTTWHIDAYKFDLPFMNHP--SDALA--SPEFVIEMGKQGGLGVINAEG----L 101
Query: 114 VEEVASTGPGIRFFQLYVYKDRNVVAQLVRR-------AERAGFKAIALTVDTPRLGRRE 166
A I + A + + IA D+ +
Sbjct: 102 WGRHADLDEAIAKVIAAYEEGDQAAATRTLQELHAAPLDTELLSERIAQVRDSGEIVAVR 161
Query: 167 ADIKNRFTLPPFLTLKNFQGLDLGKMDEANDSGLAAYVAGQIDRSLSWKDVKWLQTITKL 226
+N + P + G DL + A +V + ++K +
Sbjct: 162 VSPQNVREIAPIVIK---AGADLLVIQGTL--ISAEHVNTGGE----ALNLKEFIGSLDV 212
Query: 227 PILVKGVLTAEDVQA----GAAGIIV-----SNHGARQLDYVPAT-IM----ALEEVVKA 272
P++ GV GA GIIV +N A ++ AT I A + +
Sbjct: 213 PVIAGGVNDYTTALHMMRTGAVGIIVGGGENTNSLALGMEVSMATAIADVAAARRDYLDE 272
Query: 273 TQGR-IPVFLDGGVRRGTDVFKALALGASGIFIGRP 307
T GR + + DG + DV KA+A GA + +G P
Sbjct: 273 TGGRYVHIIADGSIENSGDVVKAIACGADAVVLGSP 308
|
| >3ffs_A Inosine-5-monophosphate dehydrogenase; beta-alpha barrel, TIM fold, oxidoreductase; 3.19A {Cryptosporidium parvum} Length = 400 | Back alignment and structure |
|---|
Score = 42.9 bits (102), Expect = 1e-04
Identities = 32/107 (29%), Positives = 50/107 (46%), Gaps = 25/107 (23%)
Query: 217 VKWLQTITKLPILVKGVLTAED----VQAGAAGI-------------IVSNHGARQLDYV 259
+K +++ + ++V V+T E ++ GA GI IV+ G Q
Sbjct: 176 LKEIKSKMNIDVIVGNVVTEEATKELIENGADGIKVGIGPGSICTTRIVAGVGVPQ---- 231
Query: 260 PATIMALEEVVKATQGR-IPVFLDGGVRRGTDVFKALALGASGIFIG 305
I A+E+ IP+ DGG+R D+ KALA+GAS + IG
Sbjct: 232 ---ITAIEKCSSVASKFGIPIIADGGIRYSGDIGKALAVGASSVMIG 275
|
| >3khj_A Inosine-5-monophosphate dehydrogenase; enzyme-inhibitor complex, oxidoreductase; HET: IMP C64; 2.80A {Cryptosporidium parvum} Length = 361 | Back alignment and structure |
|---|
Score = 41.4 bits (98), Expect = 2e-04
Identities = 32/107 (29%), Positives = 50/107 (46%), Gaps = 25/107 (23%)
Query: 217 VKWLQTITKLPILVKGVLTAED----VQAGAAGI-------------IVSNHGARQLDYV 259
+K +++ + ++V V+T E ++ GA GI IV+ G Q
Sbjct: 137 LKEIKSKMNIDVIVGNVVTEEATKELIENGADGIKVGIGPGSICTTRIVAGVGVPQ---- 192
Query: 260 PATIMALEEVVKATQGR-IPVFLDGGVRRGTDVFKALALGASGIFIG 305
I A+E+ IP+ DGG+R D+ KALA+GAS + IG
Sbjct: 193 ---ITAIEKCSSVASKFGIPIIADGGIRYSGDIGKALAVGASSVMIG 236
|
| >2cu0_A Inosine-5'-monophosphate dehydrogenase; structural genomics, pyrococcus horikoshii OT3, riken structural genomics/PROT initiative, RSGI; HET: XMP; 2.10A {Pyrococcus horikoshii} SCOP: c.1.5.1 Length = 486 | Back alignment and structure |
|---|
Score = 40.9 bits (97), Expect = 5e-04
Identities = 24/105 (22%), Positives = 39/105 (37%), Gaps = 23/105 (21%)
Query: 217 VKWLQTITKLPILVKGVLTAEDVQ--AGAAGI-------------IVSNHGARQLDYVPA 261
+K ++ +V + + V A + IV+ G Q
Sbjct: 260 MKEMRQKVDADFIVGNIANPKAVDDLTFADAVKVGIGPGSICTTRIVAGVGVPQ------ 313
Query: 262 TIMALEEVVKATQGR-IPVFLDGGVRRGTDVFKALALGASGIFIG 305
I A+ V Q + V DGG+R D+ KA+A GA + +G
Sbjct: 314 -ITAVAMVADRAQEYGLYVIADGGIRYSGDIVKAIAAGADAVMLG 357
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 40.6 bits (94), Expect = 7e-04
Identities = 50/330 (15%), Positives = 94/330 (28%), Gaps = 102/330 (30%)
Query: 104 MTLSSWSTSSVEEVASTGPGI----RFFQLYVYKDRNVVAQLVRRAERAGFK----AIAL 155
M S S ++ + + + R F + K +V + V R +K I
Sbjct: 41 MPKSILSKEEIDHIIMSKDAVSGTLRLFWTLLSKQEEMVQKFVEEVLRINYKFLMSPIKT 100
Query: 156 TVDTPRLGRRE-ADIKNR-------FT------LPPFLTLKNF-------QGLDL----- 189
P + R + ++R F L P+L L+ + + +
Sbjct: 101 EQRQPSMMTRMYIEQRDRLYNDNQVFAKYNVSRLQPYLKLRQALLELRPAKNVLIDGVLG 160
Query: 190 -GKMDEANDSGLAAYVA------GQIDRSLSW-------KDVKWLQTITKLPILVKGVLT 235
GK + +A V ++D + W L+ + KL + T
Sbjct: 161 SGK------TWVALDVCLSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQIDPNWT 214
Query: 236 A------------EDVQAGAAGIIVSNHGARQL---DYVPATIMALEEVVKATQGRIPVF 280
+ +QA ++ S L V + A F
Sbjct: 215 SRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVLLNV-----QNAKAWNA-------F 262
Query: 281 LDGGVR-----RGTDVFKALALGASGIFIGRPVVYSLA-AEGEKGVRRVLEM----LREE 330
+ + R V L+ + +L E + + + L+ L E
Sbjct: 263 -NLSCKILLTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQDLPRE 321
Query: 331 FE----LAMALSGCRSLKEITRDHIVTEWD 356
+++ E RD + T WD
Sbjct: 322 VLTTNPRRLSIIA-----ESIRDGLAT-WD 345
|
| >1jcn_A Inosine monophosphate dehydrogenase I; IMPD, IMPDH, guanine nucleotide synthesis, oxidoreductase; HET: CPR; 2.50A {Homo sapiens} SCOP: c.1.5.1 d.37.1.1 PDB: 1jr1_A* 1nf7_A* 1b3o_A* 1nfb_A* Length = 514 | Back alignment and structure |
|---|
Score = 40.2 bits (95), Expect = 8e-04
Identities = 30/119 (25%), Positives = 47/119 (39%), Gaps = 32/119 (26%)
Query: 206 GQIDRSLSWKDVKWL-QTITKLPILVKGVLTAED----VQAGAAGI-------------I 247
QI V ++ Q L ++ V+TA + AG G+
Sbjct: 282 YQIAM------VHYIKQKYPHLQVIGGNVVTAAQAKNLIDAGVDGLRVGMGCGSICITQE 335
Query: 248 VSNHGARQLDYVPATIMALEEVVKATQGR-IPVFLDGGVRRGTDVFKALALGASGIFIG 305
V G Q A+ +V + + +P+ DGG++ V KALALGAS + +G
Sbjct: 336 VMACGRPQ-------GTAVYKVAEYARRFGVPIIADGGIQTVGHVVKALALGASTVMMG 387
|
| >1jub_A Dihydroorotate dehydrogenase A; homodimer, alpha-beta barrel, flavoprotein, mutant enzyme, oxidoreductase; HET: FMN; 1.40A {Lactococcus lactis} SCOP: c.1.4.1 PDB: 1ovd_A* 1jue_A* 1dor_A* 2bsl_A* 2bx7_A* 2dor_A* 1jqv_A* 1jrb_A* 1jrc_A* 1jqx_A* Length = 311 | Back alignment and structure |
|---|
Score = 39.9 bits (94), Expect = 8e-04
Identities = 33/176 (18%), Positives = 53/176 (30%), Gaps = 45/176 (25%)
Query: 207 QIDRSLSWKDVKWLQTITKLPILVKGVLT-----------AEDVQA-GAAGIIVSNHGA- 253
D + K +K + T P+ VK L AE + + N
Sbjct: 140 AYDFEATEKLLKEVFTFFTKPLGVK--LPPYFDLVHFDIMAEILNQFPLTYVNSVNSIGN 197
Query: 254 --------RQLDYVPATIM-----------ALE---EVVKATQGRIPVFLDGGVRRGTDV 291
+ P AL + I + GG+ G D
Sbjct: 198 GLFIDPEAESVVIKPKDGFGGIGGAYIKPTALANVRAFYTRLKPEIQIIGTGGIETGQDA 257
Query: 292 FKALALGASGIFIGRPVVYSLAAEGEKGVRRVLEMLREEFELAMALSGCRSLKEIT 347
F+ L GA+ + IG + EG R++ +E E M G +S+ +
Sbjct: 258 FEHLLCGATMLQIGTALHK----EGPAIFDRII----KELEEIMNQKGYQSIADFH 305
|
Structure Templates Detected by HHsearch
Original result of HHsearch against PDB70 database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 366 | |||
| 3sgz_A | 352 | Hydroxyacid oxidase 2; flavoprotein, homology, INH | 100.0 | |
| 2nzl_A | 392 | Hydroxyacid oxidase 1; HAOX1, glycolate oxidase, G | 100.0 | |
| 2nli_A | 368 | Lactate oxidase; flavoenzyme, FMN, D-lactate, oxid | 100.0 | |
| 1gox_A | 370 | (S)-2-hydroxy-acid oxidase, peroxisomal; oxidoredu | 100.0 | |
| 1kbi_A | 511 | Cytochrome B2, L-LCR; flavocytochrome B2, electron | 100.0 | |
| 1p4c_A | 380 | L(+)-mandelate dehydrogenase; TIM barrel, hydroxy | 100.0 | |
| 3sr7_A | 365 | Isopentenyl-diphosphate delta-isomerase; isopenten | 100.0 | |
| 1vcf_A | 332 | Isopentenyl-diphosphate delta-isomerase; TIM barre | 100.0 | |
| 3vkj_A | 368 | Isopentenyl-diphosphate delta-isomerase; type 2 is | 100.0 | |
| 1p0k_A | 349 | Isopentenyl-diphosphate delta-isomerase; terpene b | 100.0 | |
| 2qr6_A | 393 | IMP dehydrogenase/GMP reductase; NP_599840.1, G re | 100.0 | |
| 1ypf_A | 336 | GMP reductase; GUAC, purines, pyrimidines, nucleos | 100.0 | |
| 2c6q_A | 351 | GMP reductase 2; TIM barrel, metal-binding, NADP, | 100.0 | |
| 3r2g_A | 361 | Inosine 5'-monophosphate dehydrogenase; structural | 100.0 | |
| 1eep_A | 404 | Inosine 5'-monophosphate dehydrogenase; alpha-beta | 99.97 | |
| 3khj_A | 361 | Inosine-5-monophosphate dehydrogenase; enzyme-inhi | 99.93 | |
| 2e6f_A | 314 | Dihydroorotate dehydrogenase; chagas disease, pyri | 99.93 | |
| 1jub_A | 311 | Dihydroorotate dehydrogenase A; homodimer, alpha-b | 99.92 | |
| 1ea0_A | 1479 | Glutamate synthase [NADPH] large chain; oxidoreduc | 99.92 | |
| 1gte_A | 1025 | Dihydropyrimidine dehydrogenase; electron transfer | 99.92 | |
| 3ffs_A | 400 | Inosine-5-monophosphate dehydrogenase; beta-alpha | 99.92 | |
| 4fo4_A | 366 | Inosine 5'-monophosphate dehydrogenase; structural | 99.92 | |
| 4ef8_A | 354 | Dihydroorotate dehydrogenase; phenyl isothiocyanat | 99.91 | |
| 1ofd_A | 1520 | Ferredoxin-dependent glutamate synthase 2; oxidore | 99.91 | |
| 4af0_A | 556 | Inosine-5'-monophosphate dehydrogenase; oxidoreduc | 99.9 | |
| 3i65_A | 415 | Dihydroorotate dehydrogenase homolog, mitochondria | 99.89 | |
| 1vhn_A | 318 | Putative flavin oxidoreducatase; structural genomi | 99.89 | |
| 1ep3_A | 311 | Dihydroorotate dehydrogenase B (PYRD subunit); het | 99.89 | |
| 3zwt_A | 367 | Dihydroorotate dehydrogenase (quinone), mitochond; | 99.88 | |
| 3oix_A | 345 | Putative dihydroorotate dehydrogenase; dihydrooro | 99.88 | |
| 1me8_A | 503 | Inosine-5'-monophosphate dehydrogenase; alpha beta | 99.88 | |
| 3usb_A | 511 | Inosine-5'-monophosphate dehydrogenase; structural | 99.87 | |
| 1tv5_A | 443 | Dhodehase, dihydroorotate dehydrogenase homolog, m | 99.87 | |
| 1f76_A | 336 | Dihydroorotate dehydrogenase; monomer, alpha-beta- | 99.86 | |
| 4avf_A | 490 | Inosine-5'-monophosphate dehydrogenase; oxidoreduc | 99.86 | |
| 4fxs_A | 496 | Inosine-5'-monophosphate dehydrogenase; structural | 99.85 | |
| 3tjx_A | 354 | Dihydroorotate dehydrogenase; PYRD, dhodh, lmdhodh | 99.85 | |
| 1vrd_A | 494 | Inosine-5'-monophosphate dehydrogenase; TM1347, st | 99.84 | |
| 3b0p_A | 350 | TRNA-dihydrouridine synthase; TIM barrel, oxidored | 99.83 | |
| 1jcn_A | 514 | Inosine monophosphate dehydrogenase I; IMPD, IMPDH | 99.83 | |
| 1zfj_A | 491 | Inosine monophosphate dehydrogenase; IMPDH, CBS do | 99.83 | |
| 2cu0_A | 486 | Inosine-5'-monophosphate dehydrogenase; structural | 99.81 | |
| 2gjl_A | 328 | Hypothetical protein PA1024; 2-nitropropane dioxyg | 99.71 | |
| 2z6i_A | 332 | Trans-2-enoyl-ACP reductase II; fatty acid synthes | 99.7 | |
| 3bo9_A | 326 | Putative nitroalkan dioxygenase; TM0800, structura | 99.7 | |
| 3bw2_A | 369 | 2-nitropropane dioxygenase; TIM barrel, oxidoreduc | 99.65 | |
| 1z41_A | 338 | YQJM, probable NADH-dependent flavin oxidoreductas | 99.59 | |
| 2gou_A | 365 | Oxidoreductase, FMN-binding; OLD yeallow enzyme, f | 99.45 | |
| 2uva_G | 2060 | Fatty acid synthase beta subunits; fungal, dehydra | 99.45 | |
| 1vyr_A | 364 | Pentaerythritol tetranitrate reductase; oxidoreduc | 99.43 | |
| 2r14_A | 377 | Morphinone reductase; H-tunnelling, flavoprotein, | 99.43 | |
| 3gr7_A | 340 | NADPH dehydrogenase; flavin, FMN, beta-alpha-barre | 99.42 | |
| 2hsa_B | 402 | 12-oxophytodienoate reductase 3; alpha beta 8 barr | 99.35 | |
| 3hgj_A | 349 | Chromate reductase; TIM barrel, oxidoreductase; HE | 99.34 | |
| 1icp_A | 376 | OPR1, 12-oxophytodienoate reductase 1; beta-alpha- | 99.3 | |
| 3l5a_A | 419 | NADH/flavin oxidoreductase/NADH oxidase; OLD yello | 99.3 | |
| 3kru_A | 343 | NADH:flavin oxidoreductase/NADH oxidase; homotetra | 99.27 | |
| 1ps9_A | 671 | 2,4-dienoyl-COA reductase; iron-sulfur, TIM barrel | 99.26 | |
| 1o94_A | 729 | Tmadh, trimethylamine dehydrogenase; electron tran | 99.26 | |
| 3k30_A | 690 | Histamine dehydrogenase; 6-S-cysteinyl-FMN, ADP bi | 99.2 | |
| 3igs_A | 232 | N-acetylmannosamine-6-phosphate 2-epimerase 2; ene | 99.17 | |
| 1y0e_A | 223 | Putative N-acetylmannosamine-6-phosphate 2-epimer; | 99.17 | |
| 3q58_A | 229 | N-acetylmannosamine-6-phosphate 2-epimerase; TIM b | 99.17 | |
| 1mzh_A | 225 | Deoxyribose-phosphate aldolase; alpha-beta barrel, | 99.08 | |
| 2uv8_G | 2051 | Fatty acid synthase subunit beta (FAS1); fatty aci | 99.07 | |
| 3l5l_A | 363 | Xenobiotic reductase A; TIM barrel, oxidoreductase | 99.03 | |
| 1xm3_A | 264 | Thiazole biosynthesis protein THIG; structural gen | 98.99 | |
| 4ab4_A | 362 | Xenobiotic reductase B; oxidoreductase, OLD yellow | 98.93 | |
| 1yxy_A | 234 | Putative N-acetylmannosamine-6-phosphate 2-epimer; | 98.93 | |
| 3gka_A | 361 | N-ethylmaleimide reductase; decode biostructures, | 98.92 | |
| 1rd5_A | 262 | Tryptophan synthase alpha chain, chloroplast; hydr | 98.85 | |
| 1wv2_A | 265 | Thiazole moeity, thiazole biosynthesis protein THI | 98.82 | |
| 3vnd_A | 267 | TSA, tryptophan synthase alpha chain; psychrophili | 98.81 | |
| 3nav_A | 271 | Tryptophan synthase alpha chain; alpha subunit, st | 98.79 | |
| 3zen_D | 3089 | Fatty acid synthase; transferase, mycolic acid bio | 98.78 | |
| 3aty_A | 379 | Tcoye, prostaglandin F2A synthase; alpha/beta barr | 98.76 | |
| 4adt_A | 297 | Pyridoxine biosynthetic enzyme PDX1 homologue, PU; | 98.73 | |
| 1qop_A | 268 | Tryptophan synthase alpha chain; lyase, carbon-oxy | 98.7 | |
| 2zbt_A | 297 | Pyridoxal biosynthesis lyase PDXS; pyridoxine bios | 98.68 | |
| 1geq_A | 248 | Tryptophan synthase alpha-subunit; hyperthermophIl | 98.66 | |
| 3o07_A | 291 | Pyridoxine biosynthesis protein SNZ1; (beta/alpha) | 98.65 | |
| 1wa3_A | 205 | 2-keto-3-deoxy-6-phosphogluconate aldolase; KDPG, | 98.63 | |
| 2nv1_A | 305 | Pyridoxal biosynthesis lyase PDXS; (beta/alpha)8-b | 98.63 | |
| 3oa3_A | 288 | Aldolase; structural genomics, seattle structural | 98.62 | |
| 3ngj_A | 239 | Deoxyribose-phosphate aldolase; lyase, structural | 98.6 | |
| 3qja_A | 272 | IGPS, indole-3-glycerol phosphate synthase; struct | 98.59 | |
| 4a3u_A | 358 | NCR, NADH\:flavin oxidoreductase/NADH oxidase; HET | 98.56 | |
| 3tsm_A | 272 | IGPS, indole-3-glycerol phosphate synthase; struct | 98.54 | |
| 2qjg_A | 273 | Putative aldolase MJ0400; beta-alpha barrel, lyase | 98.48 | |
| 2v82_A | 212 | 2-dehydro-3-deoxy-6-phosphogalactonate aldolase; l | 98.48 | |
| 2w6r_A | 266 | Imidazole glycerol phosphate synthase subunit HISF | 98.45 | |
| 3r12_A | 260 | Deoxyribose-phosphate aldolase; TIM beta/alpha-bar | 98.45 | |
| 2ekc_A | 262 | AQ_1548, tryptophan synthase alpha chain; structur | 98.45 | |
| 3ndo_A | 231 | Deoxyribose-phosphate aldolase; ssgcid, NIH, niaid | 98.43 | |
| 3tdn_A | 247 | FLR symmetric alpha-beta TIM barrel; symmetric sup | 98.42 | |
| 1ub3_A | 220 | Aldolase protein; schiff base, deoxyribose phospha | 98.39 | |
| 2p10_A | 286 | MLL9387 protein; putative phosphonopyruvate hydrol | 98.33 | |
| 3ovp_A | 228 | Ribulose-phosphate 3-epimerase; iron binding, isom | 98.33 | |
| 2yzr_A | 330 | Pyridoxal biosynthesis lyase PDXS; redox protein, | 98.33 | |
| 3f4w_A | 211 | Putative hexulose 6 phosphate synthase; humps, mal | 98.32 | |
| 1yad_A | 221 | Regulatory protein TENI; TIM barrel, transcription | 98.27 | |
| 3tjl_A | 407 | NADPH dehydrogenase; OLD yellow enzyme, flavin mon | 98.24 | |
| 4e38_A | 232 | Keto-hydroxyglutarate-aldolase/keto-deoxy-phospho | 98.24 | |
| 1vc4_A | 254 | Indole-3-glycerol phosphate synthase; lyase, trypt | 98.24 | |
| 1qo2_A | 241 | Molecule: N-((5-phosphoribosyl)-formimino)-5-amino | 98.19 | |
| 2htm_A | 268 | Thiazole biosynthesis protein THIG; thiamin biosyn | 98.17 | |
| 1vzw_A | 244 | Phosphoribosyl isomerase A; histidine biosynthesis | 98.16 | |
| 1ka9_F | 252 | Imidazole glycerol phosphtate synthase; riken stru | 98.16 | |
| 1h5y_A | 253 | HISF; histidine biosynthesis, TIM-barrel; 2.0A {Py | 98.15 | |
| 2y88_A | 244 | Phosphoribosyl isomerase A; aromatic amino acid bi | 98.14 | |
| 1thf_D | 253 | HISF protein; thermophIle, TIM-barrel, histidine b | 98.11 | |
| 3inp_A | 246 | D-ribulose-phosphate 3-epimerase; IDP02542, isomer | 98.11 | |
| 3tha_A | 252 | Tryptophan synthase alpha chain; structural genomi | 98.1 | |
| 1rpx_A | 230 | Protein (ribulose-phosphate 3-epimerase); chloropl | 98.08 | |
| 1xi3_A | 215 | Thiamine phosphate pyrophosphorylase; structural g | 98.08 | |
| 4gbu_A | 400 | NADPH dehydrogenase 1; alpha/beta barrel, enenone | 98.07 | |
| 1vcv_A | 226 | Probable deoxyribose-phosphate aldolase; DERA, hyp | 98.05 | |
| 1jvn_A | 555 | Glutamine, bifunctional histidine biosynthesis pro | 98.04 | |
| 2yw3_A | 207 | 4-hydroxy-2-oxoglutarate aldolase/2-deydro-3- deox | 98.03 | |
| 1pii_A | 452 | N-(5'phosphoribosyl)anthranilate isomerase; bifunc | 98.02 | |
| 4a29_A | 258 | Engineered retro-aldol enzyme RA95.0; de novo prot | 98.01 | |
| 2tps_A | 227 | Protein (thiamin phosphate synthase); thiamin bios | 98.0 | |
| 1i4n_A | 251 | Indole-3-glycerol phosphate synthase; thermostable | 98.0 | |
| 2fli_A | 220 | Ribulose-phosphate 3-epimerase; (beta/alpha)8-barr | 98.0 | |
| 3tdn_A | 247 | FLR symmetric alpha-beta TIM barrel; symmetric sup | 97.99 | |
| 1n7k_A | 234 | Deoxyribose-phosphate aldolase; A.pernix, tetramer | 97.97 | |
| 1w8s_A | 263 | FBP aldolase, fructose-bisphosphate aldolase class | 97.96 | |
| 1h1y_A | 228 | D-ribulose-5-phosphate 3-epimerase; oxidative pent | 97.93 | |
| 2agk_A | 260 | 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino) me | 97.93 | |
| 3jr2_A | 218 | Hexulose-6-phosphate synthase SGBH; 3-keto-L-gulon | 97.91 | |
| 1vhc_A | 224 | Putative KHG/KDPG aldolase; structural genomics, u | 97.88 | |
| 3o63_A | 243 | Probable thiamine-phosphate pyrophosphorylase; thi | 97.87 | |
| 1ujp_A | 271 | Tryptophan synthase alpha chain; riken structural | 97.85 | |
| 2a4a_A | 281 | Deoxyribose-phosphate aldolase; lyase, TIM beta/al | 97.84 | |
| 1p1x_A | 260 | Deoxyribose-phosphate aldolase; alpha-beta barrel, | 97.81 | |
| 3lab_A | 217 | Putative KDPG (2-keto-3-deoxy-6-phosphogluconate) | 97.8 | |
| 3glc_A | 295 | Aldolase LSRF; TIM barrel, lyase, schiff base; HET | 97.75 | |
| 1ka9_F | 252 | Imidazole glycerol phosphtate synthase; riken stru | 97.65 | |
| 1thf_D | 253 | HISF protein; thermophIle, TIM-barrel, histidine b | 97.64 | |
| 1wbh_A | 214 | KHG/KDPG aldolase; lyase; 1.55A {Escherichia coli} | 97.64 | |
| 3ctl_A | 231 | D-allulose-6-phosphate 3-epimerase; D-glucitol 6-p | 97.63 | |
| 3vk5_A | 286 | MOEO5; TIM barrel, transferase; HET: FPQ; 1.39A {S | 97.63 | |
| 1tqj_A | 230 | Ribulose-phosphate 3-epimerase; beta-alpha barrel | 97.62 | |
| 1h5y_A | 253 | HISF; histidine biosynthesis, TIM-barrel; 2.0A {Py | 97.51 | |
| 2y88_A | 244 | Phosphoribosyl isomerase A; aromatic amino acid bi | 97.48 | |
| 1mxs_A | 225 | KDPG aldolase; 2-keto-3-deoxy-6-phosphogluconate a | 97.46 | |
| 3ajx_A | 207 | 3-hexulose-6-phosphate synthase; HPS, OMPDC supraf | 97.44 | |
| 1ypf_A | 336 | GMP reductase; GUAC, purines, pyrimidines, nucleos | 97.39 | |
| 1vzw_A | 244 | Phosphoribosyl isomerase A; histidine biosynthesis | 97.39 | |
| 1qap_A | 296 | Quinolinic acid phosphoribosyltransferase; glycosy | 97.38 | |
| 3vzx_A | 228 | Heptaprenylglyceryl phosphate synthase; biosynthes | 97.38 | |
| 1qo2_A | 241 | Molecule: N-((5-phosphoribosyl)-formimino)-5-amino | 97.38 | |
| 2qr6_A | 393 | IMP dehydrogenase/GMP reductase; NP_599840.1, G re | 97.35 | |
| 3kts_A | 192 | Glycerol uptake operon antiterminator regulatory; | 97.34 | |
| 2w6r_A | 266 | Imidazole glycerol phosphate synthase subunit HISF | 97.32 | |
| 3s1x_A | 223 | Probable transaldolase; alpha-beta barrel, conform | 97.31 | |
| 1q6o_A | 216 | Humps, 3-keto-L-gulonate 6-phosphate decarboxylase | 97.31 | |
| 2b7n_A | 273 | Probable nicotinate-nucleotide pyrophosphorylase; | 97.23 | |
| 3r8r_A | 212 | Transaldolase; pentose phosphate pathway, schiff b | 97.19 | |
| 3nvt_A | 385 | 3-deoxy-D-arabino-heptulosonate 7-phosphate synth; | 97.17 | |
| 3ceu_A | 210 | Thiamine phosphate pyrophosphorylase; TIM barrel-l | 97.16 | |
| 4eiv_A | 297 | Deoxyribose-phosphate aldolase; chemotherapy, brai | 97.16 | |
| 3cwo_X | 237 | Beta/alpha-barrel protein based on 1THF and 1TMY; | 97.14 | |
| 1x1o_A | 286 | Nicotinate-nucleotide pyrophosphorylase; transfera | 97.12 | |
| 4gj1_A | 243 | 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino) me | 97.1 | |
| 2czd_A | 208 | Orotidine 5'-phosphate decarboxylase; pyrimidine b | 97.07 | |
| 2h6r_A | 219 | Triosephosphate isomerase; beta-alpha barrel; 2.30 | 97.05 | |
| 3exr_A | 221 | RMPD (hexulose-6-phosphate synthase); beta barrel, | 97.03 | |
| 2jbm_A | 299 | Nicotinate-nucleotide pyrophosphorylase; NAD, enzy | 96.97 | |
| 1xg4_A | 295 | Probable methylisocitrate lyase; 2-methylisocitrat | 96.95 | |
| 1tqx_A | 227 | D-ribulose-5-phosphate 3-epimerase, putative; stru | 96.91 | |
| 2pgw_A | 384 | Muconate cycloisomerase; enolase superfamily, octa | 96.81 | |
| 3cu2_A | 237 | Ribulose-5-phosphate 3-epimerase; YP_718263.1, rib | 96.81 | |
| 3tqv_A | 287 | Nicotinate-nucleotide pyrophosphorylase; glycosylt | 96.81 | |
| 3iwp_A | 287 | Copper homeostasis protein CUTC homolog; conserved | 96.76 | |
| 1y0e_A | 223 | Putative N-acetylmannosamine-6-phosphate 2-epimer; | 96.76 | |
| 2f6u_A | 234 | GGGPS, (S)-3-O-geranylgeranylglyceryl phosphate sy | 96.75 | |
| 2ovl_A | 371 | Putative racemase; structural genomics, PSI-2, pro | 96.74 | |
| 3c2e_A | 294 | Nicotinate-nucleotide pyrophosphorylase; qprtase, | 96.71 | |
| 3q58_A | 229 | N-acetylmannosamine-6-phosphate 2-epimerase; TIM b | 96.69 | |
| 1to3_A | 304 | Putative aldolase YIHT; beta-alpha barrel, structu | 96.68 | |
| 3qja_A | 272 | IGPS, indole-3-glycerol phosphate synthase; struct | 96.66 | |
| 3igs_A | 232 | N-acetylmannosamine-6-phosphate 2-epimerase 2; ene | 96.65 | |
| 3ve9_A | 215 | Orotidine-5'-phosphate decarboxylase; TIM barrel f | 96.64 | |
| 1mdl_A | 359 | Mandelate racemase; isomerase, mandelate pathway, | 96.63 | |
| 3paj_A | 320 | Nicotinate-nucleotide pyrophosphorylase, carboxyl; | 96.62 | |
| 1viz_A | 240 | PCRB protein homolog; structural genomics, unknown | 96.53 | |
| 4gj1_A | 243 | 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino) me | 96.48 | |
| 3khj_A | 361 | Inosine-5-monophosphate dehydrogenase; enzyme-inhi | 96.46 | |
| 3iv3_A | 332 | Tagatose 1,6-diphosphate aldolase 2; TIM barrel, p | 96.45 | |
| 2wqp_A | 349 | Polysialic acid capsule biosynthesis protein SIAC; | 96.44 | |
| 1vkf_A | 188 | Glycerol uptake operon antiterminator-related Pro; | 96.4 | |
| 1vpx_A | 230 | Protein (transaldolase (EC 2.2.1.2)); TM0295, stru | 96.37 | |
| 4dbe_A | 222 | Orotidine 5'-phosphate decarboxylase; TIM barrel, | 96.37 | |
| 3l0g_A | 300 | Nicotinate-nucleotide pyrophosphorylase; ssgcid, N | 96.36 | |
| 1vli_A | 385 | Spore coat polysaccharide biosynthesis protein SP; | 96.34 | |
| 1o4u_A | 285 | Type II quinolic acid phosphoribosyltransferase; s | 96.34 | |
| 2nql_A | 388 | AGR_PAT_674P, isomerase/lactonizing enzyme; enolas | 96.33 | |
| 1zco_A | 262 | 2-dehydro-3-deoxyphosphoheptonate aldolase; arabin | 96.29 | |
| 3gnn_A | 298 | Nicotinate-nucleotide pyrophosphorylase; decode bi | 96.28 | |
| 3w01_A | 235 | Heptaprenylglyceryl phosphate synthase; biosynthes | 96.22 | |
| 1qpo_A | 284 | Quinolinate acid phosphoribosyl transferase; type | 96.18 | |
| 1rvk_A | 382 | Isomerase/lactonizing enzyme; enolase superfamily, | 96.16 | |
| 2qgy_A | 391 | Enolase from the environmental genome shotgun sequ | 96.11 | |
| 2og9_A | 393 | Mandelate racemase/muconate lactonizing enzyme; NY | 96.09 | |
| 2hzg_A | 401 | Mandelate racemase/muconate lactonizing enzyme/EN | 96.01 | |
| 2bdq_A | 224 | Copper homeostasis protein CUTC; alpha beta protei | 95.98 | |
| 4e38_A | 232 | Keto-hydroxyglutarate-aldolase/keto-deoxy-phospho | 95.98 | |
| 1nu5_A | 370 | Chloromuconate cycloisomerase; enzyme, dehalogenat | 95.89 | |
| 2rdx_A | 379 | Mandelate racemase/muconate lactonizing enzyme, P; | 95.83 | |
| 1jvn_A | 555 | Glutamine, bifunctional histidine biosynthesis pro | 95.79 | |
| 3nl6_A | 540 | Thiamine biosynthetic bifunctional enzyme; thiamin | 95.78 | |
| 3ozy_A | 389 | Putative mandelate racemase; beta-alpha barrel, en | 95.75 | |
| 2pp0_A | 398 | L-talarate/galactarate dehydratase; enolase superf | 95.68 | |
| 1l6w_A | 220 | Fructose-6-phosphate aldolase 1; alpha-beta barrel | 95.62 | |
| 3ih1_A | 305 | Methylisocitrate lyase; alpha-beta structure, TIM- | 95.59 | |
| 1tkk_A | 366 | Similar to chloromuconate cycloisomerase; epimeras | 95.51 | |
| 3daq_A | 292 | DHDPS, dihydrodipicolinate synthase; lysine biosyn | 95.48 | |
| 4adt_A | 297 | Pyridoxine biosynthetic enzyme PDX1 homologue, PU; | 95.44 | |
| 3lab_A | 217 | Putative KDPG (2-keto-3-deoxy-6-phosphogluconate) | 95.42 | |
| 4fo4_A | 366 | Inosine 5'-monophosphate dehydrogenase; structural | 95.41 | |
| 3cpr_A | 304 | Dihydrodipicolinate synthetase; (beta/alpha)8-barr | 95.41 | |
| 3g8r_A | 350 | Probable spore coat polysaccharide biosynthesis P; | 95.4 | |
| 3r2g_A | 361 | Inosine 5'-monophosphate dehydrogenase; structural | 95.38 | |
| 1yxy_A | 234 | Putative N-acetylmannosamine-6-phosphate 2-epimer; | 95.36 | |
| 2oz8_A | 389 | MLL7089 protein; structural genomics, unknown func | 95.31 | |
| 1twd_A | 256 | Copper homeostasis protein CUTC; TIM-like protein, | 95.3 | |
| 3tak_A | 291 | DHDPS, dihydrodipicolinate synthase; TIM barrel, l | 95.29 | |
| 1vr6_A | 350 | Phospho-2-dehydro-3-deoxyheptonate aldolase; TM034 | 95.28 | |
| 3i4k_A | 383 | Muconate lactonizing enzyme; structural genomics, | 95.26 | |
| 1f6k_A | 293 | N-acetylneuraminate lyase; beta barrel; 1.60A {Hae | 95.26 | |
| 2qde_A | 397 | Mandelate racemase/muconate lactonizing enzyme FA | 95.24 | |
| 3sjn_A | 374 | Mandelate racemase/muconate lactonizing protein; e | 95.22 | |
| 2qdd_A | 378 | Mandelate racemase/muconate lactonizing enzyme; en | 95.21 | |
| 3flu_A | 297 | DHDPS, dihydrodipicolinate synthase; TIM barrel, b | 95.19 | |
| 1vhc_A | 224 | Putative KHG/KDPG aldolase; structural genomics, u | 95.18 | |
| 1xky_A | 301 | Dihydrodipicolinate synthase; TIM barrel, , lysine | 95.18 | |
| 1vs1_A | 276 | 3-deoxy-7-phosphoheptulonate synthase; (beta/alpha | 95.17 | |
| 3jva_A | 354 | Dipeptide epimerase; enolase superfamily, isomeras | 95.16 | |
| 3eez_A | 378 | Putative mandelate racemase/muconate lactonizing e | 95.14 | |
| 3si9_A | 315 | DHDPS, dihydrodipicolinate synthase; structural ge | 95.13 | |
| 2wkj_A | 303 | N-acetylneuraminate lyase; directed evolution, sia | 95.12 | |
| 2yxg_A | 289 | DHDPS, dihydrodipicolinate synthase; MJ0244, TIM b | 95.1 | |
| 2ehh_A | 294 | DHDPS, dihydrodipicolinate synthase; structural ge | 95.09 | |
| 2r8w_A | 332 | AGR_C_1641P; APC7498, dihydrodipicolinate synthase | 95.03 | |
| 2gdq_A | 382 | YITF; mandelate racemase/muconate lactonizing enzy | 95.02 | |
| 3stp_A | 412 | Galactonate dehydratase, putative; PSI biology, st | 95.01 | |
| 3l21_A | 304 | DHDPS, dihydrodipicolinate synthase; DAPA, dimer, | 95.0 | |
| 1vc4_A | 254 | Indole-3-glycerol phosphate synthase; lyase, trypt | 94.98 | |
| 3na8_A | 315 | Putative dihydrodipicolinate synthetase; lyase; HE | 94.97 | |
| 4dwd_A | 393 | Mandelate racemase/muconate lactonizing enzyme, C | 94.95 | |
| 3qze_A | 314 | DHDPS, dihydrodipicolinate synthase; alpha beta ba | 94.94 | |
| 1wx0_A | 223 | Transaldolase; structural genomics, riken structur | 94.94 | |
| 3m47_A | 228 | Orotidine 5'-phosphate decarboxylase; orotidine 5' | 94.94 | |
| 1tzz_A | 392 | Hypothetical protein L1841; structural genomics, m | 94.93 | |
| 2rfg_A | 297 | Dihydrodipicolinate synthase; beta barrel, amino-a | 94.89 | |
| 3b4u_A | 294 | Dihydrodipicolinate synthase; structural genomics, | 94.88 | |
| 1i4n_A | 251 | Indole-3-glycerol phosphate synthase; thermostable | 94.81 | |
| 2v9d_A | 343 | YAGE; dihydrodipicolinic acid synthase, N-acetyl n | 94.8 | |
| 3rcy_A | 433 | Mandelate racemase/muconate lactonizing enzyme-LI | 94.8 | |
| 1xm3_A | 264 | Thiazole biosynthesis protein THIG; structural gen | 94.79 | |
| 1o5k_A | 306 | DHDPS, dihydrodipicolinate synthase; TM1521, struc | 94.75 | |
| 1w0m_A | 226 | TIM, triosephosphate isomerase; glycolysis, glucon | 94.74 | |
| 2agk_A | 260 | 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino) me | 94.73 | |
| 3m5v_A | 301 | DHDPS, dihydrodipicolinate synthase; TIM barrel, c | 94.73 | |
| 3tj4_A | 372 | Mandelate racemase; enolase, dehydratase, enzyme f | 94.73 | |
| 1hg3_A | 225 | Triosephosphate isomerase; thermostability, tetram | 94.7 | |
| 3fkr_A | 309 | L-2-keto-3-deoxyarabonate dehydratase; DHDPS/NAL f | 94.69 | |
| 3nav_A | 271 | Tryptophan synthase alpha chain; alpha subunit, st | 94.68 | |
| 2vc6_A | 292 | MOSA, dihydrodipicolinate synthase; DHDPS, TIM bar | 94.65 | |
| 3s5o_A | 307 | 4-hydroxy-2-oxoglutarate aldolase, mitochondrial; | 94.64 | |
| 2p8b_A | 369 | Mandelate racemase/muconate lactonizing enzyme fam | 94.62 | |
| 2ojp_A | 292 | DHDPS, dihydrodipicolinate synthase; dimer, lysine | 94.61 | |
| 3e96_A | 316 | Dihydrodipicolinate synthase; structural genomics, | 94.59 | |
| 3d0c_A | 314 | Dihydrodipicolinate synthase; lysine biosynthesis, | 94.56 | |
| 3qfe_A | 318 | Putative dihydrodipicolinate synthase family PROT; | 94.54 | |
| 1wbh_A | 214 | KHG/KDPG aldolase; lyase; 1.55A {Escherichia coli} | 94.46 | |
| 1s2w_A | 295 | Phosphoenolpyruvate phosphomutase; phosphonopyruva | 94.43 | |
| 2yyu_A | 246 | Orotidine 5'-phosphate decarboxylase; TIM barrel, | 94.42 | |
| 1zfj_A | 491 | Inosine monophosphate dehydrogenase; IMPDH, CBS do | 94.41 | |
| 3dg3_A | 367 | Muconate cycloisomerase; muconate lactonizing enzy | 94.39 | |
| 3toy_A | 383 | Mandelate racemase/muconate lactonizing enzyme FA | 94.28 | |
| 3dz1_A | 313 | Dihydrodipicolinate synthase; lysine biosynthesis, | 94.21 | |
| 3h5d_A | 311 | DHDPS, dihydrodipicolinate synthase; lysine biosyn | 94.15 | |
| 3tfx_A | 259 | Orotidine 5'-phosphate decarboxylase; PSI-biology, | 94.09 | |
| 3tsm_A | 272 | IGPS, indole-3-glycerol phosphate synthase; struct | 94.08 | |
| 2hxt_A | 441 | L-fuconate dehydratase; enolase superfamily, D-ery | 94.0 | |
| 3ugv_A | 390 | Enolase; enzyme function initiative, EFI, lyase; 2 | 93.99 | |
| 3ldv_A | 255 | Orotidine 5'-phosphate decarboxylase; structural g | 93.98 | |
| 2ps2_A | 371 | Putative mandelate racemase/muconate lactonizing e | 93.95 | |
| 4e5t_A | 404 | Mandelate racemase / muconate lactonizing enzyme, | 93.95 | |
| 3bjs_A | 428 | Mandelate racemase/muconate lactonizing enzyme; en | 93.94 | |
| 2poz_A | 392 | Putative dehydratase; octamer, structural genomics | 93.93 | |
| 3lye_A | 307 | Oxaloacetate acetyl hydrolase; (alpha/beta)8 barre | 93.87 | |
| 3q45_A | 368 | Mandelate racemase/muconate lactonizing enzyme FA | 93.84 | |
| 3ru6_A | 303 | Orotidine 5'-phosphate decarboxylase; structural g | 93.83 | |
| 3mqt_A | 394 | Mandelate racemase/muconate lactonizing protein; P | 93.76 | |
| 3rr1_A | 405 | GALD, putative D-galactonate dehydratase; enolase, | 93.76 | |
| 1pii_A | 452 | N-(5'phosphoribosyl)anthranilate isomerase; bifunc | 93.71 | |
| 2gl5_A | 410 | Putative dehydratase protein; structural genomics, | 93.65 | |
| 3eb2_A | 300 | Putative dihydrodipicolinate synthetase; lysine bi | 93.63 | |
| 1mxs_A | 225 | KDPG aldolase; 2-keto-3-deoxy-6-phosphogluconate a | 93.6 | |
| 3a5f_A | 291 | Dihydrodipicolinate synthase; TIM barrel, enzyme, | 93.57 | |
| 3go2_A | 409 | Putative L-alanine-DL-glutamate epimerase; structu | 93.55 | |
| 4dpp_A | 360 | DHDPS 2, dihydrodipicolinate synthase 2, chloropla | 93.53 | |
| 4af0_A | 556 | Inosine-5'-monophosphate dehydrogenase; oxidoreduc | 93.47 | |
| 3mkc_A | 394 | Racemase; metabolic process, PSI2, NYSGXRC, struct | 93.36 | |
| 2o56_A | 407 | Putative mandelate racemase; dehydratase, structur | 93.32 | |
| 3ddm_A | 392 | Putative mandelate racemase/muconate lactonizing e | 93.26 | |
| 1chr_A | 370 | Chloromuconate cycloisomerase; 3.00A {Ralstonia eu | 93.25 | |
| 2yw3_A | 207 | 4-hydroxy-2-oxoglutarate aldolase/2-deydro-3- deox | 93.16 | |
| 2hmc_A | 344 | AGR_L_411P, dihydrodipicolinate synthase; alpha-be | 93.14 | |
| 4e4u_A | 412 | Mandalate racemase/muconate lactonizing enzyme; ma | 93.14 | |
| 3tr2_A | 239 | Orotidine 5'-phosphate decarboxylase; purines, pyr | 93.11 | |
| 3sbf_A | 401 | Mandelate racemase / muconate lactonizing enzyme; | 93.05 | |
| 2ox4_A | 403 | Putative mandelate racemase; enolase, dehydratase, | 93.03 | |
| 1eix_A | 245 | Orotidine 5'-monophosphate decarboxylase; alpha-be | 93.0 | |
| 3vcn_A | 425 | Mannonate dehydratase; enolase, magnesium binding | 92.98 | |
| 4avf_A | 490 | Inosine-5'-monophosphate dehydrogenase; oxidoreduc | 92.84 | |
| 3ro6_B | 356 | Putative chloromuconate cycloisomerase; TIM barrel | 92.8 | |
| 3vnd_A | 267 | TSA, tryptophan synthase alpha chain; psychrophili | 92.75 | |
| 1sjd_A | 368 | N-acylamino acid racemase; lyase, isomerase; HET: | 92.74 | |
| 2zad_A | 345 | Muconate cycloisomerase; muconate lactonizing enzy | 92.72 | |
| 1tqj_A | 230 | Ribulose-phosphate 3-epimerase; beta-alpha barrel | 92.7 | |
| 3flu_A | 297 | DHDPS, dihydrodipicolinate synthase; TIM barrel, b | 92.7 | |
| 3tji_A | 422 | Mandelate racemase/muconate lactonizing enzyme, N | 92.67 | |
| 3ffs_A | 400 | Inosine-5-monophosphate dehydrogenase; beta-alpha | 92.64 | |
| 1dbt_A | 239 | Orotidine 5'-phosphate decarboxylase; UMP, TIM bar | 92.58 | |
| 3r4e_A | 418 | Mandelate racemase/muconate lactonizing enzyme; en | 92.55 | |
| 2qq6_A | 410 | Mandelate racemase/muconate lactonizing enzyme- li | 92.44 | |
| 1rpx_A | 230 | Protein (ribulose-phosphate 3-epimerase); chloropl | 92.41 | |
| 2v82_A | 212 | 2-dehydro-3-deoxy-6-phosphogalactonate aldolase; l | 92.34 | |
| 3my9_A | 377 | Muconate cycloisomerase; structural genomics, PSI- | 92.14 | |
| 4fxs_A | 496 | Inosine-5'-monophosphate dehydrogenase; structural | 92.08 | |
| 3mwc_A | 400 | Mandelate racemase/muconate lactonizing protein; e | 92.0 | |
| 1jcn_A | 514 | Inosine monophosphate dehydrogenase I; IMPD, IMPDH | 91.97 | |
| 3v3w_A | 424 | Starvation sensing protein RSPA; enolase, enzyme f | 91.93 | |
| 3usb_A | 511 | Inosine-5'-monophosphate dehydrogenase; structural | 91.74 | |
| 3r0u_A | 379 | Enzyme of enolase superfamily; structural genomics | 91.61 | |
| 3q94_A | 288 | Fructose-bisphosphate aldolase, class II; structur | 91.51 | |
| 1vrd_A | 494 | Inosine-5'-monophosphate dehydrogenase; TM1347, st | 91.33 | |
| 1xky_A | 301 | Dihydrodipicolinate synthase; TIM barrel, , lysine | 91.15 | |
| 3t6c_A | 440 | RSPA, putative MAND family dehydratase; enolase, m | 91.14 | |
| 3gd6_A | 391 | Muconate cycloisomerase; structural genomics, NYSG | 91.12 | |
| 2c6q_A | 351 | GMP reductase 2; TIM barrel, metal-binding, NADP, | 91.1 | |
| 2ze3_A | 275 | DFA0005; organic waste LEFT-OVER decomposition, al | 91.08 | |
| 4ab4_A | 362 | Xenobiotic reductase B; oxidoreductase, OLD yellow | 90.99 | |
| 3f4w_A | 211 | Putative hexulose 6 phosphate synthase; humps, mal | 90.71 | |
| 1jub_A | 311 | Dihydroorotate dehydrogenase A; homodimer, alpha-b | 90.68 | |
| 1gvf_A | 286 | Tagatose-bisphosphate aldolase AGAY; lyase, zinc.; | 90.67 | |
| 3tha_A | 252 | Tryptophan synthase alpha chain; structural genomi | 90.66 | |
| 1vqt_A | 213 | Orotidine 5'-phosphate decarboxylase; TM0332, stru | 90.59 | |
| 1r0m_A | 375 | N-acylamino acid racemase; isomerase; 1.30A {Deino | 90.57 | |
| 2ehh_A | 294 | DHDPS, dihydrodipicolinate synthase; structural ge | 90.5 | |
| 3tak_A | 291 | DHDPS, dihydrodipicolinate synthase; TIM barrel, l | 90.5 | |
| 1eep_A | 404 | Inosine 5'-monophosphate dehydrogenase; alpha-beta | 90.44 | |
| 3i6e_A | 385 | Muconate cycloisomerase I; structural genomics, NY | 90.33 | |
| 1nsj_A | 205 | PRAI, phosphoribosyl anthranilate isomerase; therm | 90.31 | |
| 3eoo_A | 298 | Methylisocitrate lyase; seattle structural genomic | 90.25 | |
| 2hjp_A | 290 | Phosphonopyruvate hydrolase; phosporus-Ca cleavage | 90.2 | |
| 3zwt_A | 367 | Dihydroorotate dehydrogenase (quinone), mitochond; | 90.03 | |
| 2zc8_A | 369 | N-acylamino acid racemase; octamer, TIM beta/alpha | 89.95 | |
| 4aaj_A | 228 | N-(5'-phosphoribosyl)anthranilate isomerase; alpha | 89.94 | |
| 2r91_A | 286 | 2-keto-3-deoxy-(6-phospho-)gluconate aldolase; TIM | 89.91 | |
| 1h1y_A | 228 | D-ribulose-5-phosphate 3-epimerase; oxidative pent | 89.71 | |
| 3pm6_A | 306 | Putative fructose-bisphosphate aldolase; structura | 89.68 | |
| 1ujp_A | 271 | Tryptophan synthase alpha chain; riken structural | 89.55 | |
| 3vav_A | 275 | 3-methyl-2-oxobutanoate hydroxymethyltransferase; | 89.54 | |
| 3b0p_A | 350 | TRNA-dihydrouridine synthase; TIM barrel, oxidored | 89.54 | |
| 2ekc_A | 262 | AQ_1548, tryptophan synthase alpha chain; structur | 89.44 | |
| 1wv2_A | 265 | Thiazole moeity, thiazole biosynthesis protein THI | 89.43 | |
| 1qop_A | 268 | Tryptophan synthase alpha chain; lyase, carbon-oxy | 89.4 | |
| 3na8_A | 315 | Putative dihydrodipicolinate synthetase; lyase; HE | 89.37 | |
| 3p3b_A | 392 | Mandelate racemase/muconate lactonizing protein; e | 89.23 | |
| 3fs2_A | 298 | 2-dehydro-3-deoxyphosphooctonate aldolase; ssgcid, | 89.19 | |
| 3gka_A | 361 | N-ethylmaleimide reductase; decode biostructures, | 89.19 | |
| 2isw_A | 323 | Putative fructose-1,6-bisphosphate aldolase; class | 88.79 | |
| 1z41_A | 338 | YQJM, probable NADH-dependent flavin oxidoreductas | 88.54 | |
| 1v5x_A | 203 | PRA isomerase, phosphoribosylanthranilate isomeras | 88.51 | |
| 3fok_A | 307 | Uncharacterized protein CGL0159; CGL0159 ,brevibac | 88.23 | |
| 1mzh_A | 225 | Deoxyribose-phosphate aldolase; alpha-beta barrel, | 88.22 | |
| 3bo9_A | 326 | Putative nitroalkan dioxygenase; TM0800, structura | 88.06 | |
| 1rvg_A | 305 | Fructose-1,6-bisphosphate aldolase; class II aldol | 88.04 | |
| 3daq_A | 292 | DHDPS, dihydrodipicolinate synthase; lysine biosyn | 88.01 | |
| 3sz8_A | 285 | 2-dehydro-3-deoxyphosphooctonate aldolase 2; ssgci | 87.88 | |
| 1zlp_A | 318 | PSR132, petal death protein; TIM-barrel, helix swa | 87.82 | |
| 3fa4_A | 302 | 2,3-dimethylmalate lyase; alpha/beta barrel, helix | 87.77 | |
| 1m3u_A | 264 | 3-methyl-2-oxobutanoate hydroxymethyltransferase; | 87.68 | |
| 2v9d_A | 343 | YAGE; dihydrodipicolinic acid synthase, N-acetyl n | 87.67 | |
| 3eb2_A | 300 | Putative dihydrodipicolinate synthetase; lysine bi | 87.67 | |
| 2vc6_A | 292 | MOSA, dihydrodipicolinate synthase; DHDPS, TIM bar | 87.66 | |
| 3b8i_A | 287 | PA4872 oxaloacetate decarboxylase; alpha/beta barr | 87.65 | |
| 3qze_A | 314 | DHDPS, dihydrodipicolinate synthase; alpha beta ba | 87.65 | |
| 1f76_A | 336 | Dihydroorotate dehydrogenase; monomer, alpha-beta- | 87.51 | |
| 1yad_A | 221 | Regulatory protein TENI; TIM barrel, transcription | 87.34 | |
| 1o66_A | 275 | 3-methyl-2-oxobutanoate hydroxymethyltransferase; | 87.23 | |
| 3si9_A | 315 | DHDPS, dihydrodipicolinate synthase; structural ge | 87.22 | |
| 3i65_A | 415 | Dihydroorotate dehydrogenase homolog, mitochondria | 87.19 | |
| 3tcs_A | 388 | Racemase, putative; PSI-biology, nysgrc, structura | 87.1 | |
| 2nuw_A | 288 | 2-keto-3-deoxygluconate/2-keto-3-deoxy-6-phospho a | 86.97 | |
| 3dgb_A | 382 | Muconate cycloisomerase; muconate lactonizing enzy | 86.91 | |
| 3hjz_A | 334 | Transaldolase B; parachlorococcus, marine, cyanoba | 86.85 | |
| 4e4f_A | 426 | Mannonate dehydratase; magnesium binding, enzyme f | 86.84 | |
| 2rfg_A | 297 | Dihydrodipicolinate synthase; beta barrel, amino-a | 86.81 | |
| 1w3i_A | 293 | EDA, 2-keto-3-deoxy gluconate aldolase; archaeal m | 86.75 | |
| 2fli_A | 220 | Ribulose-phosphate 3-epimerase; (beta/alpha)8-barr | 86.69 | |
| 4ef8_A | 354 | Dihydroorotate dehydrogenase; phenyl isothiocyanat | 86.68 | |
| 2z6i_A | 332 | Trans-2-enoyl-ACP reductase II; fatty acid synthes | 86.64 | |
| 4dye_A | 398 | Isomerase; enolase family protein, EFI, enzym func | 86.47 | |
| 2gjl_A | 328 | Hypothetical protein PA1024; 2-nitropropane dioxyg | 86.46 | |
| 2tps_A | 227 | Protein (thiamin phosphate synthase); thiamin bios | 86.31 | |
| 3dip_A | 410 | Enolase; structural genomics, isomerase, PSI-2, pr | 86.19 | |
| 3qw3_A | 255 | Orotidine-5-phosphate decarboxylase/orotate phosph | 85.77 | |
| 1xi3_A | 215 | Thiamine phosphate pyrophosphorylase; structural g | 85.76 | |
| 2qkf_A | 280 | 3-deoxy-D-manno-octulosonic acid 8- phosphate SYN; | 85.69 | |
| 1vli_A | 385 | Spore coat polysaccharide biosynthesis protein SP; | 85.68 | |
| 2nv1_A | 305 | Pyridoxal biosynthesis lyase PDXS; (beta/alpha)8-b | 85.67 | |
| 3gr7_A | 340 | NADPH dehydrogenase; flavin, FMN, beta-alpha-barre | 85.56 | |
| 3iwp_A | 287 | Copper homeostasis protein CUTC homolog; conserved | 85.51 | |
| 3ngj_A | 239 | Deoxyribose-phosphate aldolase; lyase, structural | 85.45 | |
| 3kts_A | 192 | Glycerol uptake operon antiterminator regulatory; | 85.39 | |
| 3n9r_A | 307 | Fructose-bisphosphate aldolase; FBP aldolase, clas | 85.32 | |
| 3ajx_A | 207 | 3-hexulose-6-phosphate synthase; HPS, OMPDC supraf | 85.3 | |
| 3vav_A | 275 | 3-methyl-2-oxobutanoate hydroxymethyltransferase; | 85.29 | |
| 3tml_A | 288 | 2-dehydro-3-deoxyphosphooctonate aldolase; ssgcid, | 85.2 | |
| 1vyr_A | 364 | Pentaerythritol tetranitrate reductase; oxidoreduc | 85.13 | |
| 1tv5_A | 443 | Dhodehase, dihydroorotate dehydrogenase homolog, m | 85.09 | |
| 2wqp_A | 349 | Polysialic acid capsule biosynthesis protein SIAC; | 84.99 | |
| 2e6f_A | 314 | Dihydroorotate dehydrogenase; chagas disease, pyri | 84.85 | |
| 3bw2_A | 369 | 2-nitropropane dioxygenase; TIM barrel, oxidoreduc | 84.81 | |
| 2r8w_A | 332 | AGR_C_1641P; APC7498, dihydrodipicolinate synthase | 84.69 | |
| 3fcp_A | 381 | L-Ala-D/L-Glu epimerase, A muconate lactonizing en | 84.33 | |
| 1o60_A | 292 | 2-dehydro-3-deoxyphosphooctonate aldolase; structu | 83.62 | |
| 2zbt_A | 297 | Pyridoxal biosynthesis lyase PDXS; pyridoxine bios | 83.57 | |
| 4e8g_A | 391 | Enolase, mandelate racemase/muconate lactonizing e | 83.43 | |
| 3o63_A | 243 | Probable thiamine-phosphate pyrophosphorylase; thi | 83.34 | |
| 1p0k_A | 349 | Isopentenyl-diphosphate delta-isomerase; terpene b | 83.21 | |
| 3fv9_G | 386 | Mandelate racemase/muconate lactonizing enzyme; st | 83.0 | |
| 2gou_A | 365 | Oxidoreductase, FMN-binding; OLD yeallow enzyme, f | 82.77 | |
| 3jr2_A | 218 | Hexulose-6-phosphate synthase SGBH; 3-keto-L-gulon | 82.76 | |
| 2nwr_A | 267 | 2-dehydro-3-deoxyphosphooctonate aldolase; KDO, KD | 82.69 | |
| 2htm_A | 268 | Thiazole biosynthesis protein THIG; thiamin biosyn | 82.67 | |
| 3hgj_A | 349 | Chromate reductase; TIM barrel, oxidoreductase; HE | 82.52 | |
| 1twd_A | 256 | Copper homeostasis protein CUTC; TIM-like protein, | 82.11 | |
| 3oa3_A | 288 | Aldolase; structural genomics, seattle structural | 81.68 | |
| 3l5l_A | 363 | Xenobiotic reductase A; TIM barrel, oxidoreductase | 81.34 | |
| 3ovp_A | 228 | Ribulose-phosphate 3-epimerase; iron binding, isom | 81.22 | |
| 1o5k_A | 306 | DHDPS, dihydrodipicolinate synthase; TM1521, struc | 81.15 | |
| 4a35_A | 441 | Mitochondrial enolase superfamily member 1; isomer | 80.94 | |
| 3a5f_A | 291 | Dihydrodipicolinate synthase; TIM barrel, enzyme, | 80.92 | |
| 3eoo_A | 298 | Methylisocitrate lyase; seattle structural genomic | 80.89 | |
| 4dxk_A | 400 | Mandelate racemase / muconate lactonizing enzyme p | 80.8 | |
| 4a29_A | 258 | Engineered retro-aldol enzyme RA95.0; de novo prot | 80.4 | |
| 1tqx_A | 227 | D-ribulose-5-phosphate 3-epimerase, putative; stru | 80.09 | |
| 3g8r_A | 350 | Probable spore coat polysaccharide biosynthesis P; | 80.04 |
| >3sgz_A Hydroxyacid oxidase 2; flavoprotein, homology, INH oxidoreductase-oxidoreductase inhibitor complex; HET: FMN HO6; 1.35A {Rattus norvegicus} PDB: 1tb3_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.7e-80 Score=602.32 Aligned_cols=343 Identities=45% Similarity=0.739 Sum_probs=316.7
Q ss_pred CCCChHHHHHHHHHhCCccchhhhcCCccchhhHHHhHhcccceeeeccccCCCCCCccceeEcCcccCCceEecccccc
Q 017781 3 EITNVMEYEAIAKEKLPKMVFDYYASGAEDQWTLQENRNAFSRILFRPRILIDVSKIDMNTTVLGFKISMPIMIAPTAMQ 82 (366)
Q Consensus 3 ~~~~~~d~~~~A~~~l~~~~~~y~~~ga~~~~t~~~N~~~f~~i~l~pr~l~~~~~vd~st~l~g~~l~~Pi~iApm~~~ 82 (366)
+++|++|||+.||++||+++|+|++||++||.|+++|+++|++|.|+||+|+|++++||+|++||+++++||++||++++
T Consensus 1 ~~~~~~d~~~~A~~~lp~~~~~Y~~~ga~~e~t~~~N~~af~~~~l~prvl~dv~~~d~~t~llG~~~~~P~~iaP~g~~ 80 (352)
T 3sgz_A 1 PLVCLADFKAHAQKQLSKTSWDFIEGEADDGITYSENIAAFKRIRLRPRYLRDMSKVDTRTTIQGQEISAPICISPTAFH 80 (352)
T ss_dssp CCCSHHHHHHHHHHTSCHHHHHHHHCCCTTCHHHHHHHHHHHTCCBCCCCSSCCSSCBCCEEETTEEESSSEEECCCSCG
T ss_pred CCCCHHHHHHHHHHHCCHHHHHHHhcCCcchHHHHHHHHHHHhceeeccccCCCCCCCCceEECCcccCCcceechHHHH
Confidence 36899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccCChhhHHHHHHHHHcCCceecCCCCCCCHHHHhccCC-CceEEEeeecCCHHHHHHHHHHHHHcCCCEEEEecCCCC
Q 017781 83 KMAHPEGEYATARAASAAGTIMTLSSWSTSSVEEVASTGP-GIRFFQLYVYKDRNVVAQLVRRAERAGFKAIALTVDTPR 161 (366)
Q Consensus 83 ~l~~~~~e~~la~aa~~~G~~~~vs~~~~~~~e~i~~~~~-~~~~~Qly~~~d~~~~~~~l~ra~~~G~~ai~vtvd~p~ 161 (366)
++.||++|.++|++|+++|+++++|+++++++|||+++.+ ++.|||||+++|++.+.++++||+++||++|++|+|+|+
T Consensus 81 ~l~~~~ge~~~araa~~~gi~~~lSt~ss~s~e~v~~~~~~~~~wfQlY~~~d~~~~~~l~~ra~~aG~~alvlTvD~p~ 160 (352)
T 3sgz_A 81 SIAWPDGEKSTARAAQEANICYVISSYASYSLEDIVAAAPEGFRWFQLYMKSDWDFNKQMVQRAEALGFKALVITIDTPV 160 (352)
T ss_dssp GGTCTTHHHHHHHHHHHHTCEEEECTTCSSCHHHHHHHSTTCEEEEECCCCSCHHHHHHHHHHHHHTTCCCEEEECSCSS
T ss_pred HhcCccHHHHHHHHHHHcCCCeEeCCCCCCCHHHHHHhccCccceeccccCCCHHHHHHHHHHHHHcCCCEEEEEeCCCC
Confidence 9999999999999999999999999999999999999887 689999999999999999999999999999999999999
Q ss_pred CcchhHHHhhhcCCCCccccccccccccCCCccccchhhHHHhhhccCCCCCHHHHHHHHHhcCCCEEEEeccCHHH---
Q 017781 162 LGRREADIKNRFTLPPFLTLKNFQGLDLGKMDEANDSGLAAYVAGQIDRSLSWKDVKWLQTITKLPILVKGVLTAED--- 238 (366)
Q Consensus 162 ~g~r~~d~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~i~~lr~~~~~pv~vK~v~~~~d--- 238 (366)
.|+|++|++++|.+|.+++++++.+... .... ........|+.++|+.|+|+|+.+++||++|++.+.++
T Consensus 161 ~g~R~~d~r~~~~~p~~~~~~~~~~~~~----~~~~---~~~~~~~~d~~~~w~~i~~lr~~~~~PvivK~v~~~e~A~~ 233 (352)
T 3sgz_A 161 LGNRRRDKRNQLNLEANILKAALRALKE----EKPT---QSVPVLFPKASFCWNDLSLLQSITRLPIILKGILTKEDAEL 233 (352)
T ss_dssp CCCCHHHHHHHHHSCHHHHTTCC----------------------CCCTTCCHHHHHHHHHHCCSCEEEEEECSHHHHHH
T ss_pred CCcchhhhhcCCCCCcccchhhhccccc----cccc---chhhhhccCCCCCHHHHHHHHHhcCCCEEEEecCcHHHHHH
Confidence 9999999999999997777666543210 0000 11111346888999999999999999999999999988
Q ss_pred -HHcCCcEEEEcCCCccCCCCCcchHHHHHHHHHHcCCCceEEEecCCCCHHHHHHHHHhCcCEEEecHHHHHHhhhcCH
Q 017781 239 -VQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFIGRPVVYSLAAEGE 317 (366)
Q Consensus 239 -~~aGad~I~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~i~vi~~GGI~~~~dv~kalalGAd~V~igr~~l~~l~~~G~ 317 (366)
.++|+|+|+|+||||+++++++++++.|+++++++++++|||++|||+++.|++|+|++|||+|+|||||+|++++.|+
T Consensus 234 a~~~GaD~I~vsn~GG~~~d~~~~~~~~L~~i~~av~~~ipVia~GGI~~g~Dv~kaLalGA~aV~iGr~~l~~l~~~G~ 313 (352)
T 3sgz_A 234 AMKHNVQGIVVSNHGGRQLDEVSASIDALREVVAAVKGKIEVYMDGGVRTGTDVLKALALGARCIFLGRPILWGLACKGE 313 (352)
T ss_dssp HHHTTCSEEEECCGGGTSSCSSCCHHHHHHHHHHHHTTSSEEEEESSCCSHHHHHHHHHTTCSEEEESHHHHHHHHHHHH
T ss_pred HHHcCCCEEEEeCCCCCccCCCccHHHHHHHHHHHhCCCCeEEEECCCCCHHHHHHHHHcCCCEEEECHHHHHHHHhcCc
Confidence 9999999999999999999999999999999999877899999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHcCCCChhhhccccee
Q 017781 318 KGVRRVLEMLREEFELAMALSGCRSLKEITRDHIV 352 (366)
Q Consensus 318 ~gv~~~~~~l~~el~~~m~~~G~~~l~el~~~~l~ 352 (366)
+||.++++.+++||+.+|.++|+++++||+++.++
T Consensus 314 ~gv~~~l~~l~~el~~~m~~~G~~~i~el~~~~~~ 348 (352)
T 3sgz_A 314 DGVKEVLDILTAELHRCMTLSGCQSVAEISPDLIQ 348 (352)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTCSBGGGCCGGGBS
T ss_pred HHHHHHHHHHHHHHHHHHHHhCCCcHHHHhhhcch
Confidence 99999999999999999999999999999998875
|
| >2nzl_A Hydroxyacid oxidase 1; HAOX1, glycolate oxidase, GOX, GOX1, structural genomics, structural genom consortium, SGC, oxidoreductase; HET: FMN; 1.35A {Homo sapiens} PDB: 2rdu_A* 2rdt_A* 2rdw_A* 2w0u_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=4.7e-73 Score=561.08 Aligned_cols=351 Identities=57% Similarity=0.937 Sum_probs=316.0
Q ss_pred CCCChHHHHHHHHHhCCccchhhhcCCccchhhHHHhHhcccceeeeccccCCCCCCccceeEcCcccCCceEecccccc
Q 017781 3 EITNVMEYEAIAKEKLPKMVFDYYASGAEDQWTLQENRNAFSRILFRPRILIDVSKIDMNTTVLGFKISMPIMIAPTAMQ 82 (366)
Q Consensus 3 ~~~~~~d~~~~A~~~l~~~~~~y~~~ga~~~~t~~~N~~~f~~i~l~pr~l~~~~~vd~st~l~g~~l~~Pi~iApm~~~ 82 (366)
.++|++|||+.||++||+.+|+|++||++||.|+++|+++|++|.|+||+|++++++||+|+|+|+++++||++||||++
T Consensus 26 ~~~~~~d~~~~A~~~lp~~~~~y~~~ga~~e~t~~~N~~~f~~i~l~pr~L~~~~~~d~st~i~G~~l~~Pi~iAPmg~~ 105 (392)
T 2nzl_A 26 RLICINDYEQHAKSVLPKSIYDYYRSGANDEETLADNIAAFSRWKLYPRMLRNVAETDLSTSVLGQRVSMPICVGATAMQ 105 (392)
T ss_dssp CCCSHHHHHHHHHHHSCHHHHHHHHCCSTTCHHHHHHHHHHHHSCBCCCCSSCCTTCBCCEEETTEEESSSEEECCCSCG
T ss_pred cCCCHHHHHHHHHhhCCHHHHhhcCCCCCccHHHHHHHHhhheEEeehhhccCCcCCCcceEECCEecCCceEecccccc
Confidence 46899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccCChhhHHHHHHHHHcCCceecCCCCCCCHHHHhccCC-CceEEEeeecCCHHHHHHHHHHHHHcCCCEEEEecCCCC
Q 017781 83 KMAHPEGEYATARAASAAGTIMTLSSWSTSSVEEVASTGP-GIRFFQLYVYKDRNVVAQLVRRAERAGFKAIALTVDTPR 161 (366)
Q Consensus 83 ~l~~~~~e~~la~aa~~~G~~~~vs~~~~~~~e~i~~~~~-~~~~~Qly~~~d~~~~~~~l~ra~~~G~~ai~vtvd~p~ 161 (366)
.+.||++|.++|++|+++|+++++|+++++++|++.+..+ .+.|||||+++|++.+.++++|++++|++++++|+|||+
T Consensus 106 ~l~~~~~e~~laraA~~~G~~~~~s~~~s~~le~v~~~~~~~~~~~QLy~~~d~~~~~~~~~ra~~~G~~al~itvd~p~ 185 (392)
T 2nzl_A 106 RMAHVDGELATVRACQSLGTGMMLSSWATSSIEEVAEAGPEALRWLQLYIYKDREVTKKLVRQAEKMGYKAIFVTVDTPY 185 (392)
T ss_dssp GGTSTTHHHHHHHHHHHHTCEEEECTTCSSCHHHHHHHCTTSEEEEEECCBSSHHHHHHHHHHHHHTTCCCEEEECSCSS
T ss_pred ccccchHHHHHHHHHHHcCCCeeccchHHHHHHHHHHhcCCCcEEEEEEecCCHHHHHHHHHHHHHCCCCEEEEeCCCCC
Confidence 9999999999999999999999999999999999987654 789999999999999999999999999999999999999
Q ss_pred CcchhHHHhhhcCCCCccccccccccccC-CCc-c-ccchhhHHHhhhccCCCCCHHHHHHHHHhcCCCEEEEeccCHHH
Q 017781 162 LGRREADIKNRFTLPPFLTLKNFQGLDLG-KMD-E-ANDSGLAAYVAGQIDRSLSWKDVKWLQTITKLPILVKGVLTAED 238 (366)
Q Consensus 162 ~g~r~~d~~~~~~~p~~~~~~~~~~~~~~-~~~-~-~~~~~~~~~~~~~~d~~~~~~~i~~lr~~~~~pv~vK~v~~~~d 238 (366)
.|+|++|++++|.+|.+++++++.+.... ... . ..+.....++....++.++|+.|+++|+.+++||++|++.+.++
T Consensus 186 ~g~R~~d~r~~~~lp~~~~~~n~~~~~~~~~p~~~~~~g~~~~~~~~~~~d~~~~~~~i~~lr~~~~~PvivKgv~~~e~ 265 (392)
T 2nzl_A 186 LGNRLDDVRNRFKLPPQLRMKNFETSTLSFSPEENFGDDSGLAAYVAKAIDPSISWEDIKWLRRLTSLPIVAKGILRGDD 265 (392)
T ss_dssp CCCCHHHHHHTCCCCTTCCCTTC-----------------CHHHHHHHHBCTTCCHHHHHHHC--CCSCEEEEEECCHHH
T ss_pred ccchhHhHhhccCCccccchhhhhhhhcccCccccccCcchHHHHHhhcCChHHHHHHHHHHHHhhCCCEEEEecCCHHH
Confidence 99999999999999987765554211000 000 0 01111234555566888999999999999999999999999888
Q ss_pred ----HHcCCcEEEEcCCCccCCCCCcchHHHHHHHHHHcCCCceEEEecCCCCHHHHHHHHHhCcCEEEecHHHHHHhhh
Q 017781 239 ----VQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFIGRPVVYSLAA 314 (366)
Q Consensus 239 ----~~aGad~I~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~i~vi~~GGI~~~~dv~kalalGAd~V~igr~~l~~l~~ 314 (366)
.++|+|+|+|+||||++.++++++++.|+++++++++++|||++|||+++.|++|+|++|||+|+|||||++++++
T Consensus 266 A~~a~~aGad~I~vs~~ggr~~~~g~~~~~~l~~v~~av~~~ipVia~GGI~~g~Dv~kalalGAd~V~iGr~~l~~~~~ 345 (392)
T 2nzl_A 266 AREAVKHGLNGILVSNHGARQLDGVPATIDVLPEIVEAVEGKVEVFLDGGVRKGTDVLKALALGAKAVFVGRPIVWGLAF 345 (392)
T ss_dssp HHHHHHTTCCEEEECCGGGTSSTTCCCHHHHHHHHHHHHTTSSEEEECSSCCSHHHHHHHHHTTCSEEEECHHHHHHHHH
T ss_pred HHHHHHcCCCEEEeCCCCCCcCCCCcChHHHHHHHHHHcCCCCEEEEECCCCCHHHHHHHHHhCCCeeEECHHHHHHHHh
Confidence 9999999999999999999999999999999999877899999999999999999999999999999999999988
Q ss_pred cCHHHHHHHHHHHHHHHHHHHHHcCCCChhhhcccceee
Q 017781 315 EGEKGVRRVLEMLREEFELAMALSGCRSLKEITRDHIVT 353 (366)
Q Consensus 315 ~G~~gv~~~~~~l~~el~~~m~~~G~~~l~el~~~~l~~ 353 (366)
.|++|++++++.+++||+.+|.++|+++++||++..|+.
T Consensus 346 ~g~~gv~~~l~~l~~el~~~m~~~G~~~i~el~~~~l~~ 384 (392)
T 2nzl_A 346 QGEKGVQDVLEILKEEFRLAMALSGCQNVKVIDKTLVRK 384 (392)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHTCSBGGGCCGGGBC-
T ss_pred cChHHHHHHHHHHHHHHHHHHHHhCCCcHHHHhhhhhhh
Confidence 899999999999999999999999999999999998865
|
| >2nli_A Lactate oxidase; flavoenzyme, FMN, D-lactate, oxidoreducta; HET: FMN; 1.59A {Aerococcus viridans} PDB: 2zfa_A* 2du2_A* 2e77_A* 2j6x_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=2.3e-72 Score=552.46 Aligned_cols=348 Identities=34% Similarity=0.563 Sum_probs=303.5
Q ss_pred CCCCChHHHHHHHHHhCCccchhhhcCCccchhhHHHhHhcccceeeeccccCCCCCCccceeEcCcccCCceEeccccc
Q 017781 2 GEITNVMEYEAIAKEKLPKMVFDYYASGAEDQWTLQENRNAFSRILFRPRILIDVSKIDMNTTVLGFKISMPIMIAPTAM 81 (366)
Q Consensus 2 ~~~~~~~d~~~~A~~~l~~~~~~y~~~ga~~~~t~~~N~~~f~~i~l~pr~l~~~~~vd~st~l~g~~l~~Pi~iApm~~ 81 (366)
..++|++|||+.||++||+.+|+|++||++||.|+++|+.+|++|.|+||+|++++++||+|+|+|++++.||++|||++
T Consensus 11 ~~~~~~~d~~~~A~~~l~~~~~~y~~~ga~~~~t~~~N~~~f~~i~l~pr~L~~~~~~d~st~i~G~~l~~Pi~iAPma~ 90 (368)
T 2nli_A 11 IDVVNTYDLEEEASKVVPHGGFNYIAGASGDEWTKRANDRAWKHKLLYPRLAQDVEAPDTSTEILGHKIKAPFIMAPIAA 90 (368)
T ss_dssp CCCSCSHHHHHHHHTTSCHHHHHHHHCCSBTSHHHHHHHHGGGGEEECCCCCCCCSCCCCCEEETTEEESSSEEECCCSC
T ss_pred ccCCCHHHHHHHHHHhCCHHHHhhcccCCCccHHHHHHHHHHhheeeeccccCCCccCCcceEECCEecCCceeecchhh
Confidence 45689999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccccCChhhHHHHHHHHHcCCceecCCCCCCCHHHHhccCC-CceEEEeeecCCHHHHHHHHHHHHHcCCCEEEEecCCC
Q 017781 82 QKMAHPEGEYATARAASAAGTIMTLSSWSTSSVEEVASTGP-GIRFFQLYVYKDRNVVAQLVRRAERAGFKAIALTVDTP 160 (366)
Q Consensus 82 ~~l~~~~~e~~la~aa~~~G~~~~vs~~~~~~~e~i~~~~~-~~~~~Qly~~~d~~~~~~~l~ra~~~G~~ai~vtvd~p 160 (366)
+++.||++|.+++++|+++|+++++|+++++++|++.+..+ .+.|||||+++|++.+.++++|++++|+++++||+|||
T Consensus 91 ~g~~~~~~e~~la~aa~~~G~~~~~s~~~s~~le~v~~~~~~~~~~~QLy~~~d~~~~~~~~~ra~~aG~~ai~it~d~p 170 (368)
T 2nli_A 91 HGLAHTTKEAGTARAVSEFGTIMSISAYSGATFEEISEGLNGGPRWFQIYMAKDDQQNRDILDEAKSDGATAIILTADST 170 (368)
T ss_dssp GGGTCTTHHHHHHHHHHHHTCCEEECTTCSSCHHHHHHHHTTCCEEEEECCBSSHHHHHHHHHHHHHTTCSCEEEESBCC
T ss_pred ccCCCcHHHHHHHHHHHHcCCCEEeechHhHHHHHHHHhCCCCCEEEEEeccCCHHHHHHHHHHHHHCCCCEEEEcCCCC
Confidence 99999999999999999999999999999899999977543 78999999999999999999999999999999999999
Q ss_pred CCcchhHHHhhhcCCCCccccccccccccCCCccccchhhHHHhhhccCCCCCHHHHHHHHHhcCCCEEEEeccCHHH--
Q 017781 161 RLGRREADIKNRFTLPPFLTLKNFQGLDLGKMDEANDSGLAAYVAGQIDRSLSWKDVKWLQTITKLPILVKGVLTAED-- 238 (366)
Q Consensus 161 ~~g~r~~d~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~i~~lr~~~~~pv~vK~v~~~~d-- 238 (366)
+.|+|++|++++|.+| ++.+++.... .. ...+... .+++.+.++.++|++|+++|+.+++||++|++.++++
T Consensus 171 ~~g~r~~d~~~~~~~p--~~~~~~~~~~-~~--~~~g~~l-~~~~~~~d~~~~~~~i~~lr~~~~~PvivK~v~~~e~a~ 244 (368)
T 2nli_A 171 VSGNRDRDVKNKFVYP--FGMPIVQRYL-RG--TAEGMSL-NNIYGASKQKISPRDIEEIAGHSGLPVFVKGIQHPEDAD 244 (368)
T ss_dssp ---CBC--------CC--SCCHHHHHHH-TT--SGGGC------CTTBCSBCCHHHHHHHHHHSSSCEEEEEECSHHHHH
T ss_pred cccchhHHHhhcccCc--chhhhhhccc-cc--CCCCchH-HhhhhccCchhhHHHHHHHHHHcCCCEEEEcCCCHHHHH
Confidence 9999999999999877 2322221000 00 0011111 2345456888999999999999999999999999988
Q ss_pred --HHcCCcEEEEcCCCccCCCCCcchHHHHHHHHHHcCCCceEEEecCCCCHHHHHHHHHhCcCEEEecHHHHHHhhhcC
Q 017781 239 --VQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFIGRPVVYSLAAEG 316 (366)
Q Consensus 239 --~~aGad~I~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~i~vi~~GGI~~~~dv~kalalGAd~V~igr~~l~~l~~~G 316 (366)
.++|+|+|+|+||||++.++++++++.|+++++++++++|||++|||+++.|++|+|++|||+|+|||||++++++.|
T Consensus 245 ~a~~~Gad~I~vs~~ggr~~~~g~~~~~~l~~v~~~v~~~ipVia~GGI~~g~D~~kalalGAd~V~iGr~~l~~~~~~G 324 (368)
T 2nli_A 245 MAIKRGASGIWVSNHGARQLYEAPGSFDTLPAIAERVNKRVPIVFDSGVRRGEHVAKALASGADVVALGRPVLFGLALGG 324 (368)
T ss_dssp HHHHTTCSEEEECCGGGTSCSSCCCHHHHHHHHHHHHTTSSCEEECSSCCSHHHHHHHHHTTCSEEEECHHHHHHHHHHH
T ss_pred HHHHcCCCEEEEcCCCcCCCCCCCChHHHHHHHHHHhCCCCeEEEECCCCCHHHHHHHHHcCCCEEEECHHHHHHHHhcC
Confidence 999999999999999999999999999999999987789999999999999999999999999999999999998889
Q ss_pred HHHHHHHHHHHHHHHHHHHHHcCCCChhhhcccceeecc
Q 017781 317 EKGVRRVLEMLREEFELAMALSGCRSLKEITRDHIVTEW 355 (366)
Q Consensus 317 ~~gv~~~~~~l~~el~~~m~~~G~~~l~el~~~~l~~~~ 355 (366)
++||+++++.+++||+.+|.++|+++++||++..++...
T Consensus 325 ~~gv~~~l~~l~~el~~~m~~~G~~~i~~l~~~~l~~~~ 363 (368)
T 2nli_A 325 WQGAYSVLDYFQKDLTRVMQLTGSQNVEDLKGLDLFDNP 363 (368)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTCSSHHHHHTCCEEECT
T ss_pred hHHHHHHHHHHHHHHHHHHHHhCCcCHHHhccccEeecc
Confidence 999999999999999999999999999999999887653
|
| >1gox_A (S)-2-hydroxy-acid oxidase, peroxisomal; oxidoreductase (oxygen(A)); HET: FMN; 2.00A {Spinacia oleracea} SCOP: c.1.4.1 PDB: 1gyl_A* 1al8_A* 1al7_A* 2cdh_0 | Back alignment and structure |
|---|
Probab=100.00 E-value=1.2e-70 Score=541.31 Aligned_cols=365 Identities=88% Similarity=1.328 Sum_probs=322.8
Q ss_pred CCCCChHHHHHHHHHhCCccchhhhcCCccchhhHHHhHhcccceeeeccccCCCCCCccceeEcCcccCCceEeccccc
Q 017781 2 GEITNVMEYEAIAKEKLPKMVFDYYASGAEDQWTLQENRNAFSRILFRPRILIDVSKIDMNTTVLGFKISMPIMIAPTAM 81 (366)
Q Consensus 2 ~~~~~~~d~~~~A~~~l~~~~~~y~~~ga~~~~t~~~N~~~f~~i~l~pr~l~~~~~vd~st~l~g~~l~~Pi~iApm~~ 81 (366)
.+++|++|||+.||++||+.+|+|++||++||.|+++|+++|++|.|+||+|++++++||+|+|+|++++.||++||||+
T Consensus 2 ~~~~~~~d~~~~A~~~l~~~~~~y~~~ga~~~~t~~~N~~~f~~i~l~pr~l~~~~~~d~~t~i~G~~~~~Pi~iAPmg~ 81 (370)
T 1gox_A 2 MEITNVNEYEAIAKQKLPKMVYDYYASGAEDQWTLAENRNAFSRILFRPRILIDVTNIDMTTTILGFKISMPIMIAPTAM 81 (370)
T ss_dssp CCCCSTTHHHHHHHHHSCHHHHHHHHCCSTTCHHHHHHHHGGGGEEECCCCSCCCSCCBCCEEETTEEESSSEEECCCSC
T ss_pred CcCCCHHHHHHHHHHhCCHHHHhhhCCCCCccHHHHHHHHHHhhheeeccccCCCCCCCCceEECCcccCCceeEcccch
Confidence 35789999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccccCChhhHHHHHHHHHcCCceecCCCCCCCHHHHhccCCCceEEEeeecCCHHHHHHHHHHHHHcCCCEEEEecCCCC
Q 017781 82 QKMAHPEGEYATARAASAAGTIMTLSSWSTSSVEEVASTGPGIRFFQLYVYKDRNVVAQLVRRAERAGFKAIALTVDTPR 161 (366)
Q Consensus 82 ~~l~~~~~e~~la~aa~~~G~~~~vs~~~~~~~e~i~~~~~~~~~~Qly~~~d~~~~~~~l~ra~~~G~~ai~vtvd~p~ 161 (366)
+.+.||++|.+++++|+++|+++++|++++.++|++.+..+++.|||||+++|++.+.+++++++++|+++++||+|||.
T Consensus 82 ~~l~~~~~e~a~a~aa~~~G~~~~~s~~~~~~ieev~~~~~~~~~~QLy~~~d~~~~~~~~~~a~~~G~~ai~it~d~p~ 161 (370)
T 1gox_A 82 QKMAHPEGEYATARAASAAGTIMTLSSWATSSVEEVASTGPGIRFFQLYVYKDRNVVAQLVRRAERAGFKAIALTVDTPR 161 (370)
T ss_dssp GGGTCTTHHHHHHHHHHHTTCCEEECTTCSSCHHHHHTTCCCCEEEEECCBSSHHHHHHHHHHHHHTTCCEEEEECSCSS
T ss_pred hhhccchHHHHHHHHHHHcCCCeeccCCCCCCHHHHHhhcCCCceEEEecCCCchHHHHHHHHHHHCCCCEEEEeCCCCc
Confidence 99999999999999999999999999999999999998777889999999999999999999999999999999999999
Q ss_pred CcchhHHHhhhcCCCCccccccccccccCCCccccchhhHHHhhhccCCCCCHHHHHHHHHhcCCCEEEEeccCHHH---
Q 017781 162 LGRREADIKNRFTLPPFLTLKNFQGLDLGKMDEANDSGLAAYVAGQIDRSLSWKDVKWLQTITKLPILVKGVLTAED--- 238 (366)
Q Consensus 162 ~g~r~~d~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~i~~lr~~~~~pv~vK~v~~~~d--- 238 (366)
.|+|++|+++++.+|..+..+++............+.....++++..++.++|+.++++++.+++||++|++.++++
T Consensus 162 ~g~r~~d~r~~~~~p~~~~~~~~~~~~~~~~~~~~g~~~~~~v~~~~~~~~~~~~i~~l~~~~~~pv~vK~~~~~e~a~~ 241 (370)
T 1gox_A 162 LGRREADIKNRFVLPPFLTLKNFEGIDLGKMDKANDSGLSSYVAGQIDRSLSWKDVAWLQTITSLPILVKGVITAEDARL 241 (370)
T ss_dssp CCCCHHHHHTTCCCCTTCCCGGGSSSCCC---------HHHHHHHTBCTTCCHHHHHHHHHHCCSCEEEECCCSHHHHHH
T ss_pred ccccHHHHHhccCCCcccchhhhhhhhhhccccccCccHHHHHHhhcCccchHHHHHHHHHHhCCCEEEEecCCHHHHHH
Confidence 99999999999988876655544321100000011122234566667888899999999999999999999999888
Q ss_pred -HHcCCcEEEEcCCCccCCCCCcchHHHHHHHHHHcCCCceEEEecCCCCHHHHHHHHHhCcCEEEecHHHHHHhhhcCH
Q 017781 239 -VQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFIGRPVVYSLAAEGE 317 (366)
Q Consensus 239 -~~aGad~I~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~i~vi~~GGI~~~~dv~kalalGAd~V~igr~~l~~l~~~G~ 317 (366)
.++|+|+|+|+||||++.++++++++.++++++.+++++|||++|||+++.|+.|+|++|||+|+|||+|+++++++|+
T Consensus 242 a~~~Gad~I~vs~~ggr~~~~~~~~~~~l~~v~~~~~~~ipvia~GGI~~~~D~~k~l~~GAdaV~iGr~~l~~~~~~G~ 321 (370)
T 1gox_A 242 AVQHGAAGIIVSNHGARQLDYVPATIMALEEVVKAAQGRIPVFLDGGVRRGTDVFKALALGAAGVFIGRPVVFSLAAEGE 321 (370)
T ss_dssp HHHTTCSEEEECCGGGTSSTTCCCHHHHHHHHHHHTTTSSCEEEESSCCSHHHHHHHHHHTCSEEEECHHHHHHHHHHHH
T ss_pred HHHcCCCEEEECCCCCccCCCcccHHHHHHHHHHHhCCCCEEEEECCCCCHHHHHHHHHcCCCEEeecHHHHHHHhhccH
Confidence 9999999999999999999999999999999999877899999999999999999999999999999999999888899
Q ss_pred HHHHHHHHHHHHHHHHHHHHcCCCChhhhcccceeeccCCCCCCCCCCC
Q 017781 318 KGVRRVLEMLREEFELAMALSGCRSLKEITRDHIVTEWDASLPRPVPRL 366 (366)
Q Consensus 318 ~gv~~~~~~l~~el~~~m~~~G~~~l~el~~~~l~~~~~~~~~~~~~~~ 366 (366)
+||.++++.+.+||+.+|.++|+.+++|+++..++...++++...+.+|
T Consensus 322 ~gv~~~~~~l~~el~~~m~~~G~~~i~el~~~~l~~~~~~~~~~~~~~~ 370 (370)
T 1gox_A 322 AGVKKVLQMMRDEFELTMALSGCRSLKEISRSHIAADWDGPSSRAVARL 370 (370)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTCSBTTTCCGGGEEETTC----------
T ss_pred HHHHHHHHHHHHHHHHHHHHhCCCCHHHhhhcceeccccccccchhhcC
Confidence 9999999999999999999999999999999999887777766665543
|
| >1kbi_A Cytochrome B2, L-LCR; flavocytochrome B2, electron transfer, oxidoreductase; HET: HEM FMN; 2.30A {Saccharomyces cerevisiae} SCOP: c.1.4.1 d.120.1.1 PDB: 1fcb_A* 1lco_A* 1ldc_A* 1sze_A* 2oz0_A* 1szf_A* 1szg_A* 1ltd_A* 1kbj_A* 1qcw_A* 3ks0_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.2e-68 Score=545.48 Aligned_cols=348 Identities=40% Similarity=0.693 Sum_probs=312.7
Q ss_pred CCCChHHHHHHHHHhCCccchhhhcCCccchhhHHHhHhcccceeeeccccCCCCCCccceeEcCcccCCceEecccccc
Q 017781 3 EITNVMEYEAIAKEKLPKMVFDYYASGAEDQWTLQENRNAFSRILFRPRILIDVSKIDMNTTVLGFKISMPIMIAPTAMQ 82 (366)
Q Consensus 3 ~~~~~~d~~~~A~~~l~~~~~~y~~~ga~~~~t~~~N~~~f~~i~l~pr~l~~~~~vd~st~l~g~~l~~Pi~iApm~~~ 82 (366)
.++|++|||+.||++||+.+|+|++||+++|.|+++|+++|++|.|+||+|++++++||+|+|+|+++++||+||||+++
T Consensus 121 ~~~~~~d~~~~A~~~l~~~~~~y~~~ga~~e~t~~~N~~af~~i~l~pr~L~dv~~~d~st~i~G~~l~~Pi~iAPma~~ 200 (511)
T 1kbi_A 121 NIINLYDFEYLASQTLTKQAWAYYSSGANDEVTHRENHNAYHRIFFKPKILVDVRKVDISTDMLGSHVDVPFYVSATALC 200 (511)
T ss_dssp GCCSHHHHHHHHHHHSCHHHHHHHHCCSTTCHHHHHHHHGGGGCEECCCCSCCCSSCBCCEEETTEEESSSEEECCCSCG
T ss_pred ccCCHHHHHHHHHhhCCHHHhhhccCCCCchhHHHHHHHHhhhhccccccccCcccccCccccCCccCCCCeEeccchhc
Confidence 46899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccCC-hhhHHHHHHHHH--cCCceecCCCCCCCHHHHhccC---CCceEEEeeecCCHHHHHHHHHHHHHcCCCEEEEe
Q 017781 83 KMAHP-EGEYATARAASA--AGTIMTLSSWSTSSVEEVASTG---PGIRFFQLYVYKDRNVVAQLVRRAERAGFKAIALT 156 (366)
Q Consensus 83 ~l~~~-~~e~~la~aa~~--~G~~~~vs~~~~~~~e~i~~~~---~~~~~~Qly~~~d~~~~~~~l~ra~~~G~~ai~vt 156 (366)
++.|| ++|.++|++|++ +|+++++|++++.++|++.+.. ..+.|||||+++|++.+.+++++++++|+++|+||
T Consensus 201 ~l~~~~~~e~alaraA~~~~~G~~~~~s~~a~~s~e~v~~~~~~~~~~~~~QLy~~~d~~~~~~~~~rae~aG~~al~it 280 (511)
T 1kbi_A 201 KLGNPLEGEKDVARGCGQGVTKVPQMISTLASCSPEEIIEAAPSDKQIQWYQLYVNSDRKITDDLVKNVEKLGVKALFVT 280 (511)
T ss_dssp GGTCTTTTHHHHHHHHHSSSSCCCEEECTTCSSCHHHHHHTCCCSSCCEEEEECCCSSHHHHHHHHHHHHHHTCSCEEEE
T ss_pred cccChhhHHHHHHHHHHHhCCCeeEEeCCcccCCHHHHHhhcCCCCCCeEEEEeecCCHHHHHHHHHHHHHcCCCEEEEe
Confidence 99999 999999999999 9999999999999999998765 26899999999999999999999999999999999
Q ss_pred cCCCCCcchhHHHhhhcCCCCccccccccccccCCCccccchhhHHHhhhccCCCCCHHHHHHHHHhcCCCEEEEeccCH
Q 017781 157 VDTPRLGRREADIKNRFTLPPFLTLKNFQGLDLGKMDEANDSGLAAYVAGQIDRSLSWKDVKWLQTITKLPILVKGVLTA 236 (366)
Q Consensus 157 vd~p~~g~r~~d~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~i~~lr~~~~~pv~vK~v~~~ 236 (366)
+|+|+.|+|+++++++|..|... ...+.+ ... ....+...++....++.++|+.|+++|+.+++||++|++.+.
T Consensus 281 vd~p~~g~R~~~~r~g~~~p~~~-~~~~~g---~~~--~~~~g~~~~~~~~~d~~~~~~~i~~lr~~~~~PvivKgv~~~ 354 (511)
T 1kbi_A 281 VDAPSLGQREKDMKLKFSNTKAG-PKAMKK---TNV--EESQGASRALSKFIDPSLTWKDIEELKKKTKLPIVIKGVQRT 354 (511)
T ss_dssp CSCSSCCCCHHHHHHHHTTCC--------C---CCC--SSCCCGGGGCBTTBCTTCCHHHHHHHHHHCSSCEEEEEECSH
T ss_pred CCCCCccccHHHHhccCCCCccc-cccccc---ccc--cccccHHHHHhhccChHhHHHHHHHHHHHhCCcEEEEeCCCH
Confidence 99999999999999999777421 110000 000 011122234444467889999999999999999999999998
Q ss_pred HH----HHcCCcEEEEcCCCccCCCCCcchHHHHHHHHHHc-----CCCceEEEecCCCCHHHHHHHHHhCcCEEEecHH
Q 017781 237 ED----VQAGAAGIIVSNHGARQLDYVPATIMALEEVVKAT-----QGRIPVFLDGGVRRGTDVFKALALGASGIFIGRP 307 (366)
Q Consensus 237 ~d----~~aGad~I~vs~~gg~~~~~~~~~~~~l~~i~~~~-----~~~i~vi~~GGI~~~~dv~kalalGAd~V~igr~ 307 (366)
++ .++|+|+|+||||||++++.++++++.|+++++++ .+++|||++|||+++.|++|+|++|||+|+||||
T Consensus 355 e~A~~a~~aGad~I~vs~hgG~~~d~~~~~~~~l~~v~~~v~~~~~~~~ipVia~GGI~~g~Dv~kaLalGAdaV~iGr~ 434 (511)
T 1kbi_A 355 EDVIKAAEIGVSGVVLSNHGGRQLDFSRAPIEVLAETMPILEQRNLKDKLEVFVDGGVRRGTDVLKALCLGAKGVGLGRP 434 (511)
T ss_dssp HHHHHHHHTTCSEEEECCTTTTSSTTCCCHHHHHHHHHHHHHTTTCBTTBEEEEESSCCSHHHHHHHHHHTCSEEEECHH
T ss_pred HHHHHHHHcCCCEEEEcCCCCccCCCCCchHHHHHHHHHHHHhhccCCCcEEEEECCCCCHHHHHHHHHcCCCEEEECHH
Confidence 87 99999999999999999999999999999999987 3589999999999999999999999999999999
Q ss_pred HHHHhhhcCHHHHHHHHHHHHHHHHHHHHHcCCCChhhhcccceeeccC
Q 017781 308 VVYSLAAEGEKGVRRVLEMLREEFELAMALSGCRSLKEITRDHIVTEWD 356 (366)
Q Consensus 308 ~l~~l~~~G~~gv~~~~~~l~~el~~~m~~~G~~~l~el~~~~l~~~~~ 356 (366)
|++++.+.|++|+.++++.+++||+.+|.++|+.+++||++..++....
T Consensus 435 ~l~~~~~~G~~gv~~~l~~l~~el~~~m~~~G~~~i~el~~~~l~~~~~ 483 (511)
T 1kbi_A 435 FLYANSCYGRNGVEKAIEILRDEIEMSMRLLGVTSIAELKPDLLDLSTL 483 (511)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCBGGGCCGGGEECTTT
T ss_pred HHHHHHhcChHHHHHHHHHHHHHHHHHHHHhCCCcHHHHhHHHhhhhhh
Confidence 9999988899999999999999999999999999999999998876544
|
| >1p4c_A L(+)-mandelate dehydrogenase; TIM barrel, hydroxy acid oxidizing enzyme, oxidoreductase; HET: FMN MES; 1.35A {Pseudomonas putida} SCOP: c.1.4.1 PDB: 1huv_A* 1p5b_A* 3giy_A* 2a7p_A* 2a85_A* 2a7n_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=8.2e-68 Score=522.54 Aligned_cols=351 Identities=43% Similarity=0.751 Sum_probs=312.1
Q ss_pred CCCChHHHHHHHHHhCCccchhhhcCCccchhhHHHhHhcccceeeeccccCCCCCCccceeEcCcccCCceEecccccc
Q 017781 3 EITNVMEYEAIAKEKLPKMVFDYYASGAEDQWTLQENRNAFSRILFRPRILIDVSKIDMNTTVLGFKISMPIMIAPTAMQ 82 (366)
Q Consensus 3 ~~~~~~d~~~~A~~~l~~~~~~y~~~ga~~~~t~~~N~~~f~~i~l~pr~l~~~~~vd~st~l~g~~l~~Pi~iApm~~~ 82 (366)
+++|++|||+.||++||+.+|+|++||++||.|+++|+.+|++|+|+||+|++++++||+|+|+|+++++||++|||+++
T Consensus 4 ~~~~~~d~~~~A~~~l~~~~~~y~~~ga~~~~t~~~n~~~f~~i~l~pr~L~~~~~~d~st~i~G~~l~~Pv~iap~~~~ 83 (380)
T 1p4c_A 4 NLFNVEDYRKLAQKRLPKMVYDYLEGGAEDEYGVKHNRDVFQQWRFKPKRLVDVSRRSLQAEVLGKRQSMPLLIGPTGLN 83 (380)
T ss_dssp CCSSHHHHHHHHHHHSCHHHHHHHHCCSTTCHHHHHHHHGGGGEEECCCCSCCCSSCBCCEEETTEEESSSEEECCCSCG
T ss_pred cCCCHHHHHHHHHHhCCHHHHHHhCCCCCccHHHHHHHHHHhheeeeccccCCCccCcceeEECCeecCCceEecCcccc
Confidence 56799999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccCChhhHHHHHHHHHcCCceecCCCCCCCHHHHhccCCCceEEEeeecCCHHHHHHHHHHHHHcCCCEEEEecCCCCC
Q 017781 83 KMAHPEGEYATARAASAAGTIMTLSSWSTSSVEEVASTGPGIRFFQLYVYKDRNVVAQLVRRAERAGFKAIALTVDTPRL 162 (366)
Q Consensus 83 ~l~~~~~e~~la~aa~~~G~~~~vs~~~~~~~e~i~~~~~~~~~~Qly~~~d~~~~~~~l~ra~~~G~~ai~vtvd~p~~ 162 (366)
++.||++|.++|++|+++|+++++|+++++++|++.+..+.+.|||||+++ ++...+++++++++|+++++||+|.|..
T Consensus 84 ~~~~~~~~~~~a~aa~~~G~~~~vss~s~~~le~i~~~~~~~~~fQly~~~-~~~~~~~i~~a~~aG~~al~vTvd~p~~ 162 (380)
T 1p4c_A 84 GALWPKGDLALARAATKAGIPFVLSTASNMSIEDLARQCDGDLWFQLYVIH-REIAQGMVLKALHTGYTTLVLTTDVAVN 162 (380)
T ss_dssp GGTSTTHHHHHHHHHHHHTCCEEECTTCSSCHHHHHHHCCSCEEEEECCSS-HHHHHHHHHHHHHTTCCEEEEECSCSSC
T ss_pred ccCCCcHHHHHHHHHHHcCCCeecCccccCCHHHHHhccCCCeEEEEEech-HHHHHHHHHHHHHcCCCEEEEeecCccc
Confidence 999999999999999999999999999999999998764578999999988 9999999999999999999999999999
Q ss_pred cchhHHHhhhcCCCCccccccccccccCCCccccchhhHHHhhhccCCCCCHHHHHHHHHhcCCCEEEEeccCHHH----
Q 017781 163 GRREADIKNRFTLPPFLTLKNFQGLDLGKMDEANDSGLAAYVAGQIDRSLSWKDVKWLQTITKLPILVKGVLTAED---- 238 (366)
Q Consensus 163 g~r~~d~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~i~~lr~~~~~pv~vK~v~~~~d---- 238 (366)
|+|++|++++|.+|..+...++.......+......+...+.....+++++|+.|+++++.+++||++|++.++++
T Consensus 163 g~r~~d~~~g~~~~~~~~~~~~~~~~~~~l~~~~~~ala~~~~~~~~p~~~~~~i~~i~~~~~~Pv~vkgv~t~e~a~~a 242 (380)
T 1p4c_A 163 GYRERDLHNRFKIPPFLTLKNFEGIDLGKMDKANLEMQAALMSRQMDASFNWEALRWLRDLWPHKLLVKGLLSAEDADRC 242 (380)
T ss_dssp CCCHHHHHHTCCCCTTCCCGGGTTCCCSCCSSTTTTTHHHHTSSCCCTTCCHHHHHHHHHHCCSEEEEEEECCHHHHHHH
T ss_pred cchhHHHhcCCCCccccCHHHhhhhhhhccCcccchHHHHHHHhhcCccccHHHHHHHHHhcCCCEEEEecCcHHHHHHH
Confidence 9999999999987755444332100000010011111222333334788899999999999999999999999988
Q ss_pred HHcCCcEEEEcCCCccCCCCCcchHHHHHHHHHHcCCCceEEEecCCCCHHHHHHHHHhCcCEEEecHHHHHHhhhcCHH
Q 017781 239 VQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFIGRPVVYSLAAEGEK 318 (366)
Q Consensus 239 ~~aGad~I~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~i~vi~~GGI~~~~dv~kalalGAd~V~igr~~l~~l~~~G~~ 318 (366)
.++|+|+|+|+||||++.++++++++.++++++.+ ++|||++|||+++.|+.|+|++|||+|++||+|++++.+.|++
T Consensus 243 ~~aGad~I~vs~~gg~~~d~~~~~~~~l~~v~~~~--~~pVia~GGI~~~~dv~kal~~GAdaV~iGr~~l~~~~~~g~~ 320 (380)
T 1p4c_A 243 IAEGADGVILSNHGGRQLDCAISPMEVLAQSVAKT--GKPVLIDSGFRRGSDIVKALALGAEAVLLGRATLYGLAARGET 320 (380)
T ss_dssp HHTTCSEEEECCGGGTSCTTCCCGGGTHHHHHHHH--CSCEEECSSCCSHHHHHHHHHTTCSCEEESHHHHHHHHHHHHH
T ss_pred HHcCCCEEEEcCCCCCcCCCCcCHHHHHHHHHHHc--CCeEEEECCCCCHHHHHHHHHhCCcHhhehHHHHHHHHhcCHH
Confidence 99999999999999999999999999999999988 5699999999999999999999999999999999998888999
Q ss_pred HHHHHHHHHHHHHHHHHHHcCCCChhhhcccceeeccC
Q 017781 319 GVRRVLEMLREEFELAMALSGCRSLKEITRDHIVTEWD 356 (366)
Q Consensus 319 gv~~~~~~l~~el~~~m~~~G~~~l~el~~~~l~~~~~ 356 (366)
++.++++.+.+||+.+|.++|+.+++|+++..++..+.
T Consensus 321 ~v~~~~~~l~~el~~~m~~~G~~~i~el~~~~l~~~g~ 358 (380)
T 1p4c_A 321 GVDEVLTLLKADIDRTLAQIGCPDITSLSPDYLQNEGV 358 (380)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTCCBGGGCCGGGEEEC--
T ss_pred HHHHHHHHHHHHHHHHHHHhCCCCHHHhccCeEEeccc
Confidence 99999999999999999999999999999998877553
|
| >3sr7_A Isopentenyl-diphosphate delta-isomerase; isopentenyl pyrophosphate isomerase, TIM-barrel; 2.04A {Streptococcus mutans} | Back alignment and structure |
|---|
Probab=100.00 E-value=3e-44 Score=351.00 Aligned_cols=270 Identities=19% Similarity=0.302 Sum_probs=213.0
Q ss_pred hcccceeeecccc--CCCCCCccceeEcCcccCCceEecccccccccCChhhHHHHHHHHHcCCceecCCCCCCCHHH--
Q 017781 41 NAFSRILFRPRIL--IDVSKIDMNTTVLGFKISMPIMIAPTAMQKMAHPEGEYATARAASAAGTIMTLSSWSTSSVEE-- 116 (366)
Q Consensus 41 ~~f~~i~l~pr~l--~~~~~vd~st~l~g~~l~~Pi~iApm~~~~l~~~~~e~~la~aa~~~G~~~~vs~~~~~~~e~-- 116 (366)
..||+|+|+|+.| .++++|||+|+|+|+++++||++|||++++..+++.|.++|++|+++|++|++|++... +|+
T Consensus 54 ~~fd~i~l~~~~lP~~~~~~vd~st~i~g~~l~~Pi~iapMtgg~~~~~~in~~lA~~a~~~G~~~~vGs~~~~-le~~~ 132 (365)
T 3sr7_A 54 NSFDDIELIHHSLPDYDLAEIDLSTHFAGQDFDFPFYINAMTGGSQKGKEVNEKLAQVADTCGLLFVTGSYSTA-LKNPD 132 (365)
T ss_dssp CGGGGEEECCCSSCCSCGGGCCCCEEETTEEESSSEEEECC----CCCHHHHHHHHHHHHHHTCCEEC------------
T ss_pred CCcceEEEECCCCCcCCcccccceEEECCEEccCceEeccccCCCcchhHHHHHHHHHHHHcCCCeeccccccc-ccCcc
Confidence 5899999999999 57889999999999999999999999999988889999999999999999999998642 121
Q ss_pred -----HhccCC-CceEEEeeecCCHHHHHHHHHHHHHcCCCEEEEecCCCCCcchhHHHhhhcCCCCccccccccccccC
Q 017781 117 -----VASTGP-GIRFFQLYVYKDRNVVAQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLTLKNFQGLDLG 190 (366)
Q Consensus 117 -----i~~~~~-~~~~~Qly~~~d~~~~~~~l~ra~~~G~~ai~vtvd~p~~g~r~~d~~~~~~~p~~~~~~~~~~~~~~ 190 (366)
+.+..| .+.+.++...... ++..+.++..|++++.+++|..
T Consensus 133 ~~~~~v~r~~P~~~~ianig~~~~~---e~~~~~ve~~~adal~ihln~~------------------------------ 179 (365)
T 3sr7_A 133 DTSYQVKKSRPHLLLATNIGLDKPY---QAGLQAVRDLQPLFLQVHINLM------------------------------ 179 (365)
T ss_dssp ------------CCEEEEEETTSCH---HHHHHHHHHHCCSCEEEEECHH------------------------------
T ss_pred ccceEehhhCCCCcEEEEeCCCCCH---HHHHHHHHhcCCCEEEEecccc------------------------------
Confidence 222224 3444455433232 2455566788999999998832
Q ss_pred CCccccchhhHHHhhhccCCCC-CH-HHHHHHHHhcCCCEEEEec---cCHHH----HHcCCcEEEEcCCCccCC-----
Q 017781 191 KMDEANDSGLAAYVAGQIDRSL-SW-KDVKWLQTITKLPILVKGV---LTAED----VQAGAAGIIVSNHGARQL----- 256 (366)
Q Consensus 191 ~~~~~~~~~~~~~~~~~~d~~~-~~-~~i~~lr~~~~~pv~vK~v---~~~~d----~~aGad~I~vs~~gg~~~----- 256 (366)
++.+++.+++++ +| +.|+++|+.+++||++|++ .++++ .++|+|+|+|+||||+++
T Consensus 180 ----------qe~~~p~Gd~~~~~~~~~I~~l~~~~~~PVivK~vg~g~s~e~A~~l~~aGad~I~V~g~GGt~~a~ie~ 249 (365)
T 3sr7_A 180 ----------QELLMPEGEREFRSWKKHLSDYAKKLQLPFILKEVGFGMDVKTIQTAIDLGVKTVDISGRGGTSFAYIEN 249 (365)
T ss_dssp ----------HHHTSSSSCCCCHHHHHHHHHHHHHCCSCEEEEECSSCCCHHHHHHHHHHTCCEEECCCBC---------
T ss_pred ----------ccccCCCCCCcHHHHHHHHHHHHHhhCCCEEEEECCCCCCHHHHHHHHHcCCCEEEEeCCCCcccchhhc
Confidence 122333356666 67 5799999999999999998 68877 999999999999999864
Q ss_pred ----------CCCcchHHHHHHHHHHcCCCceEEEecCCCCHHHHHHHHHhCcCEEEecHHHHHHhhhcCHHHHHHHHHH
Q 017781 257 ----------DYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFIGRPVVYSLAAEGEKGVRRVLEM 326 (366)
Q Consensus 257 ----------~~~~~~~~~l~~i~~~~~~~i~vi~~GGI~~~~dv~kalalGAd~V~igr~~l~~l~~~G~~gv~~~~~~ 326 (366)
+++.++.+.|.++. .+.+++|||++|||+++.|++|+|++|||+|++||+||+++.+.|+++|.++++.
T Consensus 250 ~r~~~~~~~~~~g~pt~~~L~~v~-~~~~~ipvia~GGI~~g~Dv~KaLalGAdaV~ig~~~l~a~~~~G~~~v~~~l~~ 328 (365)
T 3sr7_A 250 RRGGNRSYLNQWGQTTAQVLLNAQ-PLMDKVEILASGGIRHPLDIIKALVLGAKAVGLSRTMLELVEQHSVHEVIAIVNG 328 (365)
T ss_dssp -----CGGGTTCSCBHHHHHHHHG-GGTTTSEEEECSSCCSHHHHHHHHHHTCSEEEESHHHHHHHHHSCHHHHHHHHHH
T ss_pred cccccccccccccccHHHHHHHHH-HhcCCCeEEEeCCCCCHHHHHHHHHcCCCEEEECHHHHHHHHhcChHHHHHHHHH
Confidence 67899999998764 4555899999999999999999999999999999999999988999999999999
Q ss_pred HHHHHHHHHHHcCCCChhhhcccceeecc
Q 017781 327 LREEFELAMALSGCRSLKEITRDHIVTEW 355 (366)
Q Consensus 327 l~~el~~~m~~~G~~~l~el~~~~l~~~~ 355 (366)
+++||+.+|.++|+++++||++..++..+
T Consensus 329 l~~eL~~~m~~~G~~si~eL~~~~~~~~~ 357 (365)
T 3sr7_A 329 WKEDLRLIMCALNCQTIAELRNVDYLLYG 357 (365)
T ss_dssp HHHHHHHHHHHTTCSSTGGGGGCCEEECH
T ss_pred HHHHHHHHHHHhCCcCHHHhccCCEEEcc
Confidence 99999999999999999999998777643
|
| >1vcf_A Isopentenyl-diphosphate delta-isomerase; TIM barrel, structural genomics, riken structural genomics/P initiative, RSGI; HET: FMN; 2.60A {Thermus thermophilus} SCOP: c.1.4.1 PDB: 1vcg_A* 3dh7_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.1e-42 Score=337.70 Aligned_cols=276 Identities=26% Similarity=0.301 Sum_probs=208.7
Q ss_pred hhhhcCCccchhhHHHhHhcccceeeeccccC--CCCCCccceeEcCcccCCceEecccccccccCChh---hHHHHHHH
Q 017781 23 FDYYASGAEDQWTLQENRNAFSRILFRPRILI--DVSKIDMNTTVLGFKISMPIMIAPTAMQKMAHPEG---EYATARAA 97 (366)
Q Consensus 23 ~~y~~~ga~~~~t~~~N~~~f~~i~l~pr~l~--~~~~vd~st~l~g~~l~~Pi~iApm~~~~l~~~~~---e~~la~aa 97 (366)
.+|+..+..++.|+++|+.+|++|.|+||+|+ +++++||+|+|+|++++.||++|||++. |+.+ +.+++++|
T Consensus 8 ~~hi~~~~~~~~~~~~~~~~f~~~~l~p~~l~~~~~~~~d~~~~i~g~~l~~P~~iapm~g~---~~~~~~~~~~la~~a 84 (332)
T 1vcf_A 8 RKHLEACLEGEVAYQKTTTGLEGFRLRYQALAGLALSEVDLTTPFLGKTLKAPFLIGAMTGG---EENGERINLALAEAA 84 (332)
T ss_dssp ---------------CCCCSGGGEEECCCTTCCCCGGGCCCCEEETTEEESSSEEECCCC------CCHHHHHHHHHHHH
T ss_pred HHHHHHHHhcCcccccchhhhhhcEEehhhCCCCCCCCCCcceEECCcccCCceEEeccccC---CcchhHHHHHHHHHH
Confidence 48999999999999999999999999999998 7889999999999999999999999864 5554 47999999
Q ss_pred HHcCCceecCCCCCCCHHHH--------hccCC-CceE-----EEeeecCCHHHHHHHHHHHHHcCCCEEEEecCCCCCc
Q 017781 98 SAAGTIMTLSSWSTSSVEEV--------ASTGP-GIRF-----FQLYVYKDRNVVAQLVRRAERAGFKAIALTVDTPRLG 163 (366)
Q Consensus 98 ~~~G~~~~vs~~~~~~~e~i--------~~~~~-~~~~-----~Qly~~~d~~~~~~~l~ra~~~G~~ai~vtvd~p~~g 163 (366)
+++|+++++|++++. +++. ....+ .|.+ .|++ ..+++...+. ++..+++++.++++..
T Consensus 85 ~~~G~~~~~~~~~~~-le~~~~~~~~ql~~~~~d~pv~~~~~~~q~~-~~~~~~~~~a---~~~~~~~a~~i~~n~~--- 156 (332)
T 1vcf_A 85 EALGVGMMLGSGRIL-LERPEALRSFRVRKVAPKALLIANLGLAQLR-RYGRDDLLRL---VEMLEADALAFHVNPL--- 156 (332)
T ss_dssp HHHTCEEEEEECHHH-HHCTTTHHHHCCTTTCSSSCEEEEEEGGGGG-TCCHHHHHHH---HHHHTCSEEEEECCHH---
T ss_pred HHcCCCEEeCCchhc-ccCCCccceEEeeccCCCceeecccChhhhh-ccChHHHHHH---HhhcCCCceeeccchH---
Confidence 999999999998654 4431 11111 2222 2222 1233433333 3445788887776531
Q ss_pred chhHHHhhhcCCCCccccccccccccCCCccccchhhHHHhhhccCCCC--CHHHHHHHHHhcCCCEEEEec---cCHHH
Q 017781 164 RREADIKNRFTLPPFLTLKNFQGLDLGKMDEANDSGLAAYVAGQIDRSL--SWKDVKWLQTITKLPILVKGV---LTAED 238 (366)
Q Consensus 164 ~r~~d~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~--~~~~i~~lr~~~~~pv~vK~v---~~~~d 238 (366)
+++++ ..++.+ .|+.++++|+ +++||++|++ .++++
T Consensus 157 -------------------------------------~~~~~-~~~~~~~~~~~~i~~vr~-~~~Pv~vK~v~~g~~~e~ 197 (332)
T 1vcf_A 157 -------------------------------------QEAVQ-RGDTDFRGLVERLAELLP-LPFPVMVKEVGHGLSREA 197 (332)
T ss_dssp -------------------------------------HHHHT-TSCCCCTTHHHHHHHHCS-CSSCEEEECSSSCCCHHH
T ss_pred -------------------------------------HHHhc-CCCccHHHHHHHHHHHHc-CCCCEEEEecCCCCCHHH
Confidence 01111 112222 4789999999 9999999987 78887
Q ss_pred ----HHcCCcEEEEcCCCc---------cC---------CCCCcchHHHHHHHHHHcCCCceEEEecCCCCHHHHHHHHH
Q 017781 239 ----VQAGAAGIIVSNHGA---------RQ---------LDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALA 296 (366)
Q Consensus 239 ----~~aGad~I~vs~~gg---------~~---------~~~~~~~~~~l~~i~~~~~~~i~vi~~GGI~~~~dv~kala 296 (366)
.++|+|+|+|||||| ++ .++++++++.|.++++.++ ++|||++|||+++.|++|+|+
T Consensus 198 a~~~~~~G~d~I~vs~~ggt~~~~~~~~r~~~~~~~~~~~~~g~~~~~~l~~v~~~~~-~ipvia~GGI~~~~d~~kal~ 276 (332)
T 1vcf_A 198 ALALRDLPLAAVDVAGAGGTSWARVEEWVRFGEVRHPELCEIGIPTARAILEVREVLP-HLPLVASGGVYTGTDGAKALA 276 (332)
T ss_dssp HHHHTTSCCSEEECCCBTSCCHHHHHHTC--------CCTTCSCBHHHHHHHHHHHCS-SSCEEEESSCCSHHHHHHHHH
T ss_pred HHHHHHcCCCEEEeCCCCCCcchhHHHhhccccchhhhHhhccccHHHHHHHHHHhcC-CCeEEEECCCCCHHHHHHHHH
Confidence 899999999999988 55 6789999999999999885 699999999999999999999
Q ss_pred hCcCEEEecHHHHHHhhhcCHHHHHHHHHHHHHHHHHHHHHcCCCChhhhcccc
Q 017781 297 LGASGIFIGRPVVYSLAAEGEKGVRRVLEMLREEFELAMALSGCRSLKEITRDH 350 (366)
Q Consensus 297 lGAd~V~igr~~l~~l~~~G~~gv~~~~~~l~~el~~~m~~~G~~~l~el~~~~ 350 (366)
+|||+|++||||++++ +.|+++|.++++.+.+||+.+|.++|+++++||++..
T Consensus 277 ~GAd~V~igr~~l~~~-~~G~~gv~~~~~~l~~el~~~m~~~G~~~i~el~~~~ 329 (332)
T 1vcf_A 277 LGADLLAVARPLLRPA-LEGAERVAAWIGDYLEELRTALFAIGARNPKEARGRV 329 (332)
T ss_dssp HTCSEEEECGGGHHHH-TTCHHHHHHHHHHHHHHHHHHHHHHTCSSGGGGTTCE
T ss_pred hCCChHhhhHHHHHHH-hccHHHHHHHHHHHHHHHHHHHHHhCCCCHHHHhhhh
Confidence 9999999999999997 7899999999999999999999999999999998764
|
| >3vkj_A Isopentenyl-diphosphate delta-isomerase; type 2 isopentenyl diphosphate isomerase; HET: FNR; 1.70A {Sulfolobus shibatae} PDB: 2zrv_A* 2zrw_A* 2zrx_A* 2zry_A* 2zrz_A* 3b03_A* 3b04_A* 3b05_A* 3b06_A* 2zru_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.3e-40 Score=326.19 Aligned_cols=269 Identities=21% Similarity=0.243 Sum_probs=218.3
Q ss_pred hcccceeeeccccC--CCCCCccceeEcCcccCCceEecccccccccCChhhHHHHHHHHHcCCceecCCCCCC------
Q 017781 41 NAFSRILFRPRILI--DVSKIDMNTTVLGFKISMPIMIAPTAMQKMAHPEGEYATARAASAAGTIMTLSSWSTS------ 112 (366)
Q Consensus 41 ~~f~~i~l~pr~l~--~~~~vd~st~l~g~~l~~Pi~iApm~~~~l~~~~~e~~la~aa~~~G~~~~vs~~~~~------ 112 (366)
+.||+|+|+|+.|+ +.+++||+|+|+|++++.||++|||++++....+.|..+|++|+++|+++++|++...
T Consensus 27 ~~~~~v~l~~~~lp~~~~~~vd~st~~~g~~l~~Pv~ia~MtGgt~~~~~in~~la~~a~~~G~~~~vGs~~~~l~~~~~ 106 (368)
T 3vkj_A 27 TFLNDVILVHQGFPGISFSEINTKTKFFRKEISVPVMVTGMTGGRNELGRINKIIAEVAEKFGIPMGVGSQRVAIEKAEA 106 (368)
T ss_dssp CSGGGEEECCCSSCBSBGGGCBCCEEETTEEESSSEEECCCCCSSHHHHHHHHHHHHHHHHHTCCEECCCCHHHHHCGGG
T ss_pred CCcceEEEEcCCCCccCcccccceeEECCEeccCCeEEecCCCCCchhhHHHHHHHHHHHHhCCCeeeecchhccCCHHH
Confidence 57999999999998 7889999999999999999999999887755556788999999999999999998321
Q ss_pred --CHHHHhccCC-CceEEEeee----c-CCHHHHHHHHHHHHHcCCCEEEEecCCCCCcchhHHHhhhcCCCCccccccc
Q 017781 113 --SVEEVASTGP-GIRFFQLYV----Y-KDRNVVAQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLTLKNF 184 (366)
Q Consensus 113 --~~e~i~~~~~-~~~~~Qly~----~-~d~~~~~~~l~ra~~~G~~ai~vtvd~p~~g~r~~d~~~~~~~p~~~~~~~~ 184 (366)
+.+-+++.+| .+.+-++.. + .+.+...+ .++..+++++.|+++.
T Consensus 107 ~~s~~~vr~~ap~~~~~anlg~~ql~~~~~~~~~~~---av~~~~a~al~Ihln~------------------------- 158 (368)
T 3vkj_A 107 RESFAIVRKVAPTIPIIANLGMPQLVKGYGLKEFQD---AIQMIEADAIAVHLNP------------------------- 158 (368)
T ss_dssp SHHHHHHHHHCSSSCEEEEEEGGGGGTTCCHHHHHH---HHHHTTCSEEEEECCH-------------------------
T ss_pred HhhHHHHHHhCcCcceecCcCeeecCCCCCHHHHHH---HHHHhcCCCeEEEecc-------------------------
Confidence 1111344455 344445543 2 34444333 3445688899988762
Q ss_pred cccccCCCccccchhhHHHhhhccCCCCC---HHHHHHHHHhcCCCEEEEec---cCHHH----HHcCCcEEEEcCCCc-
Q 017781 185 QGLDLGKMDEANDSGLAAYVAGQIDRSLS---WKDVKWLQTITKLPILVKGV---LTAED----VQAGAAGIIVSNHGA- 253 (366)
Q Consensus 185 ~~~~~~~~~~~~~~~~~~~~~~~~d~~~~---~~~i~~lr~~~~~pv~vK~v---~~~~d----~~aGad~I~vs~~gg- 253 (366)
.++.+++.+++++. ++.|+++++.+++||++|++ .++++ .++|+|+|+|+||||
T Consensus 159 ---------------~~~~~~p~g~~~~~~~~~~~i~~i~~~~~vPVivK~vG~g~s~~~A~~l~~aGad~I~V~g~GGt 223 (368)
T 3vkj_A 159 ---------------AQEVFQPEGEPEYQIYALEKLRDISKELSVPIIVKESGNGISMETAKLLYSYGIKNFDTSGQGGT 223 (368)
T ss_dssp ---------------HHHHHSSSCCCBCBTHHHHHHHHHHTTCSSCEEEECSSSCCCHHHHHHHHHTTCCEEECCCBTSB
T ss_pred ---------------hhhhhCCCCCchhhHHHHHHHHHHHHHcCCCEEEEeCCCCCCHHHHHHHHhCCCCEEEEeCCCCC
Confidence 11122233345553 67899999999999999987 78877 999999999999999
Q ss_pred --------cC--------------CCCCcchHHHHHHHHHHcCCCceEEEecCCCCHHHHHHHHHhCcCEEEecHHHHHH
Q 017781 254 --------RQ--------------LDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFIGRPVVYS 311 (366)
Q Consensus 254 --------~~--------------~~~~~~~~~~l~~i~~~~~~~i~vi~~GGI~~~~dv~kalalGAd~V~igr~~l~~ 311 (366)
|+ .+++.|+...|.+++++++ ++|||++|||+++.|++|+|++|||+|++||||+++
T Consensus 224 ~~~~iE~~R~~~~~~~~~~~~~~~~~~g~pt~~~l~~v~~~~~-~ipvia~GGI~~~~d~~kal~lGA~~v~ig~~~l~~ 302 (368)
T 3vkj_A 224 NWIAIEMIRDIRRGNWKAESAKNFLDWGVPTAASIMEVRYSVP-DSFLVGSGGIRSGLDAAKAIALGADIAGMALPVLKS 302 (368)
T ss_dssp CHHHHHHHHHHHTTCTHHHHHHHTTTCSCBHHHHHHHHHHHST-TCEEEEESSCCSHHHHHHHHHHTCSEEEECHHHHHH
T ss_pred cccchhhhhcccccccchhhccccccccccHHHHHHHHHHHcC-CCcEEEECCCCCHHHHHHHHHcCCCEEEEcHHHHHH
Confidence 43 3458889999999998874 699999999999999999999999999999999998
Q ss_pred hhhcCHHHHHHHHHHHHHHHHHHHHHcCCCChhhhcccceeec
Q 017781 312 LAAEGEKGVRRVLEMLREEFELAMALSGCRSLKEITRDHIVTE 354 (366)
Q Consensus 312 l~~~G~~gv~~~~~~l~~el~~~m~~~G~~~l~el~~~~l~~~ 354 (366)
+. .|+++|.++++.+.+||+.+|.++|+++++||++..++..
T Consensus 303 ~~-~G~~~v~~~l~~l~~eL~~~m~~~G~~~i~el~~~~l~~~ 344 (368)
T 3vkj_A 303 AI-EGKESLEQFFRKIIFELKAAMMLTGSKDVDALKKTSIVIL 344 (368)
T ss_dssp HH-HCHHHHHHHHHHHHHHHHHHHHHTTCCBHHHHHTCCEEEC
T ss_pred Hh-cChHHHHHHHHHHHHHHHHHHHHhCCCCHHHhccCCEEec
Confidence 65 6899999999999999999999999999999999887754
|
| >1p0k_A Isopentenyl-diphosphate delta-isomerase; terpene biosynthesis, dimethylallyl diphosphate, flavoprotein; 1.90A {Bacillus subtilis} SCOP: c.1.4.1 PDB: 1p0n_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.4e-40 Score=324.99 Aligned_cols=271 Identities=24% Similarity=0.348 Sum_probs=219.4
Q ss_pred hHhcccceeeeccccC--CCCCCccceeEcCcccCCceEeccccccc-ccCChhhHHHHHHHHHcCCceecCCCCCCCHH
Q 017781 39 NRNAFSRILFRPRILI--DVSKIDMNTTVLGFKISMPIMIAPTAMQK-MAHPEGEYATARAASAAGTIMTLSSWSTSSVE 115 (366)
Q Consensus 39 N~~~f~~i~l~pr~l~--~~~~vd~st~l~g~~l~~Pi~iApm~~~~-l~~~~~e~~la~aa~~~G~~~~vs~~~~~~~e 115 (366)
++.+|++|.|+||+|+ +++++||+|+|+|.++++||++|||++.. ..++++|.+++++|+++|+++++|++++. ++
T Consensus 21 ~~~~f~~~~l~p~~l~~~~~~~~d~~~~i~g~~~~~P~~iApm~g~~~~~~~~~~~~~a~aa~~~G~~~~~~~~~~~-l~ 99 (349)
T 1p0k_A 21 RETGLDDITFVHVSLPDLALEQVDISTKIGELSSSSPIFINAMTGGGGKLTYEINKSLARAASQAGIPLAVGSQMSA-LK 99 (349)
T ss_dssp CCCSGGGEEECCCSCCCCCGGGCBCCEEETTEEESCSEEEECCCCSCHHHHHHHHHHHHHHHHHHTCCEECCCCTTT-TT
T ss_pred ccCccceEEEEccccCCCCcccCCceeEECCcccCCceEEcCccccchhhhhHHHHHHHHHHHHcCCcEEeccchhc-cc
Confidence 3678999999999998 77899999999999999999999995543 44466789999999999999999998654 22
Q ss_pred H---------HhccCC-CceEEEeeecCCHHHHHHHHHHHHHcCCCEEEEecCCCCCcchhHHHhhhcCCCCcccccccc
Q 017781 116 E---------VASTGP-GIRFFQLYVYKDRNVVAQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLTLKNFQ 185 (366)
Q Consensus 116 ~---------i~~~~~-~~~~~Qly~~~d~~~~~~~l~ra~~~G~~ai~vtvd~p~~g~r~~d~~~~~~~p~~~~~~~~~ 185 (366)
+ +.+..+ .|.+.|+..+.+.+... +.++++|++++.++++||.. +.
T Consensus 100 ~~~~~~~~~~~~~~~~~~pv~~~i~~~~~~~~~~---~~~~~~gad~i~i~~~~~~~----------~~----------- 155 (349)
T 1p0k_A 100 DPSERLSYEIVRKENPNGLIFANLGSEATAAQAK---EAVEMIGANALQIHLNVIQE----------IV----------- 155 (349)
T ss_dssp CHHHHHHHHHHHHHCSSSCEEEEEETTCCHHHHH---HHHHHTTCSEEEEEECTTTT----------C------------
T ss_pred CcccccceehhhhhCCCceeEEeecCCCCHHHHH---HHHHhcCCCeEEecccchhh----------hc-----------
Confidence 2 222233 57888987555655433 34667899999999998742 00
Q ss_pred ccccCCCccccchhhHHHhhhccCCCC--CHHHHHHHHHhcCCCEEEEec---cCHHH----HHcCCcEEEEcCCCc---
Q 017781 186 GLDLGKMDEANDSGLAAYVAGQIDRSL--SWKDVKWLQTITKLPILVKGV---LTAED----VQAGAAGIIVSNHGA--- 253 (366)
Q Consensus 186 ~~~~~~~~~~~~~~~~~~~~~~~d~~~--~~~~i~~lr~~~~~pv~vK~v---~~~~d----~~aGad~I~vs~~gg--- 253 (366)
++..++.+ .++.++++|+.+++||++|++ .+.++ .++|+|+|+++||||
T Consensus 156 -------------------~~~~~~~~~~~~~~i~~vr~~~~~Pv~vK~~~~~~~~~~a~~a~~~Gad~I~v~~~ggt~~ 216 (349)
T 1p0k_A 156 -------------------MPEGDRSFSGALKRIEQICSRVSVPVIVKEVGFGMSKASAGKLYEAGAAAVDIGGYGGTNF 216 (349)
T ss_dssp --------------------------CTTHHHHHHHHHHHCSSCEEEEEESSCCCHHHHHHHHHHTCSEEEEEC------
T ss_pred -------------------CCCCCcchHHHHHHHHHHHHHcCCCEEEEecCCCCCHHHHHHHHHcCCCEEEEcCCCCcch
Confidence 00123344 357799999999999999987 67776 899999999999988
Q ss_pred ------cC-------CCCCcchHHHHHHHHHHcCCCceEEEecCCCCHHHHHHHHHhCcCEEEecHHHHHHhhhcCHHHH
Q 017781 254 ------RQ-------LDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFIGRPVVYSLAAEGEKGV 320 (366)
Q Consensus 254 ------~~-------~~~~~~~~~~l~~i~~~~~~~i~vi~~GGI~~~~dv~kalalGAd~V~igr~~l~~l~~~G~~gv 320 (366)
++ .++++++++.|.++++.+ +++|||++|||++++|+.|+|++|||+|+|||+|++.+.+.|++++
T Consensus 217 ~~~e~~r~~~~~~~~~~~g~~~~~~l~~v~~~~-~~ipvia~GGI~~~~d~~k~l~~GAd~V~iG~~~l~~~~~~g~~~~ 295 (349)
T 1p0k_A 217 SKIENLRRQRQISFFNSWGISTAASLAEIRSEF-PASTMIASGGLQDALDVAKAIALGASCTGMAGHFLKALTDSGEEGL 295 (349)
T ss_dssp ---------CCGGGGTTCSCCHHHHHHHHHHHC-TTSEEEEESSCCSHHHHHHHHHTTCSEEEECHHHHHHHHHHHHHHH
T ss_pred hhHHHhhcccchhhhhccCccHHHHHHHHHHhc-CCCeEEEECCCCCHHHHHHHHHcCCCEEEEcHHHHHHHhhcCHHHH
Confidence 43 467889999999999877 4799999999999999999999999999999999999877889999
Q ss_pred HHHHHHHHHHHHHHHHHcCCCChhhhcccceeec
Q 017781 321 RRVLEMLREEFELAMALSGCRSLKEITRDHIVTE 354 (366)
Q Consensus 321 ~~~~~~l~~el~~~m~~~G~~~l~el~~~~l~~~ 354 (366)
.++++.+.+||+.+|.++|+.+++|+++..++..
T Consensus 296 ~~~~~~~~~~l~~~m~~~G~~~i~el~~~~~~~~ 329 (349)
T 1p0k_A 296 LEEIQLILEELKLIMTVLGARTIADLQKAPLVIK 329 (349)
T ss_dssp HHHHHHHHHHHHHHHHHHTCCBHHHHTTCCEEEC
T ss_pred HHHHHHHHHHHHHHHHHhCCCCHHHHhhCCeecc
Confidence 9999999999999999999999999999988753
|
| >2qr6_A IMP dehydrogenase/GMP reductase; NP_599840.1, G reductase domain, structural genomics, joint center for STR genomics, JCSG; HET: MSE; 1.50A {Corynebacterium glutamicum atcc 13032} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.6e-42 Score=342.27 Aligned_cols=310 Identities=18% Similarity=0.236 Sum_probs=231.2
Q ss_pred HHhCCccchhhhcCCccchhhHHHhHhcccceeeecc-ccCCCCCCccceeEcCcccCCceEecccccccccCChhhHHH
Q 017781 15 KEKLPKMVFDYYASGAEDQWTLQENRNAFSRILFRPR-ILIDVSKIDMNTTVLGFKISMPIMIAPTAMQKMAHPEGEYAT 93 (366)
Q Consensus 15 ~~~l~~~~~~y~~~ga~~~~t~~~N~~~f~~i~l~pr-~l~~~~~vd~st~l~g~~l~~Pi~iApm~~~~l~~~~~e~~l 93 (366)
+.+||+..|+|+.+|++++ ++|..+||+|.|+|+ .+++++++||+|+|+|+++++||++|||++ +.++ ++
T Consensus 13 ~~~~~~~~~~~~~~~~~~~---~~~~~~fd~v~l~p~~~~~~~~~vdlst~l~g~~l~~Pii~Apm~g--~~~~----~~ 83 (393)
T 2qr6_A 13 ENLYFQGMRDHVEIGIGRE---ARRTYSLDDISVVSSRRTRSSKDVDTTWHIDAYKFDLPFMNHPSDA--LASP----EF 83 (393)
T ss_dssp -CHHHHHHHHEEEEETTEE---EECCCCGGGEEECCCSCCCCGGGCBCCEEETTEEESSSEEECCCTT--TCCH----HH
T ss_pred ccccccchHHHHhcccccc---cccCCChhhEEEccCCCCCChhHCCceeEEcccccCCCeEeCCCCC--cccH----HH
Confidence 4578999999999999999 469999999999998 888999999999999999999999999984 3443 79
Q ss_pred HHHHHHcCCceecCC--------CCCCCHHHHhccCC-------CceEEEeeecC-CHHHHHHHHHHHHHcCCCEEEEec
Q 017781 94 ARAASAAGTIMTLSS--------WSTSSVEEVASTGP-------GIRFFQLYVYK-DRNVVAQLVRRAERAGFKAIALTV 157 (366)
Q Consensus 94 a~aa~~~G~~~~vs~--------~~~~~~e~i~~~~~-------~~~~~Qly~~~-d~~~~~~~l~ra~~~G~~ai~vtv 157 (366)
|+++++.|.++++++ ..+.++|++++..+ .+.|+|+|... |++...+++++++++|+..++ .+
T Consensus 84 a~a~a~~G~~gvl~~~~~~~~~~~~~~~~eeia~~~~~~d~~~g~~~~~q~~~~~~d~~~~~~~i~~~~~~g~~v~~-~v 162 (393)
T 2qr6_A 84 VIEMGKQGGLGVINAEGLWGRHADLDEAIAKVIAAYEEGDQAAATRTLQELHAAPLDTELLSERIAQVRDSGEIVAV-RV 162 (393)
T ss_dssp HHHHHHTTSBCEEETTSSTTTCSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHTTSCCEE-EE
T ss_pred HHHHHHcCCcEEEEecceecccCCchhHHHHHHHHHHhcCCCccchhhhhcccccCCHHHHHHHHHHHhhcCCeEEE-Ee
Confidence 999999999999986 22235566665432 35799998655 999999999999999988765 22
Q ss_pred CCCCCcchhHHHhhhcCCCCccccccccccccCCCccccchhhHHHhhhccCCCCCHHHHHHHHHhcCCCEEEEeccCHH
Q 017781 158 DTPRLGRREADIKNRFTLPPFLTLKNFQGLDLGKMDEANDSGLAAYVAGQIDRSLSWKDVKWLQTITKLPILVKGVLTAE 237 (366)
Q Consensus 158 d~p~~g~r~~d~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~i~~lr~~~~~pv~vK~v~~~~ 237 (366)
. +.+..+....+.- .+...-.+. ... ..+++ ..+..+|+.++|+++.+++||++|++.+++
T Consensus 163 ~----~~~~~e~a~~~~~-agad~i~i~---~~~-------~~~~~----~~~~~~~~~i~~l~~~~~~pvi~ggi~t~e 223 (393)
T 2qr6_A 163 S----PQNVREIAPIVIK-AGADLLVIQ---GTL-------ISAEH----VNTGGEALNLKEFIGSLDVPVIAGGVNDYT 223 (393)
T ss_dssp C----TTTHHHHHHHHHH-TTCSEEEEE---CSS-------CCSSC----CCC-----CHHHHHHHCSSCEEEECCCSHH
T ss_pred C----CccHHHHHHHHHH-CCCCEEEEe---CCc-------ccccc----CCCcccHHHHHHHHHhcCCCEEECCcCCHH
Confidence 2 2344443333210 000000000 000 00011 123347888999999999999999999998
Q ss_pred H----HHcCCcEEEEcC--CCccCCC-CCcchHHHHHHHHHH-------cCCC-ceEEEecCCCCHHHHHHHHHhCcCEE
Q 017781 238 D----VQAGAAGIIVSN--HGARQLD-YVPATIMALEEVVKA-------TQGR-IPVFLDGGVRRGTDVFKALALGASGI 302 (366)
Q Consensus 238 d----~~aGad~I~vs~--~gg~~~~-~~~~~~~~l~~i~~~-------~~~~-i~vi~~GGI~~~~dv~kalalGAd~V 302 (366)
+ .++|+|+|+|++ |++++.+ +++++++.|++++++ ++++ +|||++|||+++.|++|+|++|||+|
T Consensus 224 ~a~~~~~~Gad~i~vg~Gg~~~~~~~~~g~~~~~~l~~v~~~~~~~~~~~~~~~ipvia~GGI~~~~dv~kalalGA~~V 303 (393)
T 2qr6_A 224 TALHMMRTGAVGIIVGGGENTNSLALGMEVSMATAIADVAAARRDYLDETGGRYVHIIADGSIENSGDVVKAIACGADAV 303 (393)
T ss_dssp HHHHHHTTTCSEEEESCCSCCHHHHTSCCCCHHHHHHHHHHHHHHHHHHHTSCCCEEEECSSCCSHHHHHHHHHHTCSEE
T ss_pred HHHHHHHcCCCEEEECCCcccccccCCCCCChHHHHHHHHHHHHHhHhhcCCcceEEEEECCCCCHHHHHHHHHcCCCEE
Confidence 8 889999999987 5565544 478999999999887 5433 99999999999999999999999999
Q ss_pred EecHHH-----------HHHhhhcCH---HHH--------------HHHH----------HHHHHHHHHHHHHcCCCChh
Q 017781 303 FIGRPV-----------VYSLAAEGE---KGV--------------RRVL----------EMLREEFELAMALSGCRSLK 344 (366)
Q Consensus 303 ~igr~~-----------l~~l~~~G~---~gv--------------~~~~----------~~l~~el~~~m~~~G~~~l~ 344 (366)
++||+| +|++++.|. +|+ .+++ +.|++||+..|.++|+++++
T Consensus 304 ~iG~~~l~~~es~~~~~~~g~~~~~~~~~~Gv~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~el~~~m~~~G~~~i~ 383 (393)
T 2qr6_A 304 VLGSPLARAEEAAGKGYFWPAVAAHPRFPRGVVTESVDLDEAAPSLEQILHGPSTMPWGVENFEGGLKRALAKCGYTDLK 383 (393)
T ss_dssp EECGGGGGSTTCTTTTEECCGGGGCSSSCCCCCEECC----CCCCHHHHHHCCCSCTTSSSCHHHHHHHHHHHHTCSBHH
T ss_pred EECHHHHcCCCCCCceEEEecccCcccCCCccccccccccccchhHHHHhccchhHHHHHHHHHHHHHHHHHHhCCCCHH
Confidence 999996 455554432 333 2333 35689999999999999999
Q ss_pred hhcccceee
Q 017781 345 EITRDHIVT 353 (366)
Q Consensus 345 el~~~~l~~ 353 (366)
||++..++.
T Consensus 384 el~~~~~~~ 392 (393)
T 2qr6_A 384 SFQKVSLHV 392 (393)
T ss_dssp HHTTCCEEE
T ss_pred HHhhccEec
Confidence 999987754
|
| >1ypf_A GMP reductase; GUAC, purines, pyrimidines, nucleosides, nucleotides, nucleo nucleoside interconversions, spine, structural genomics; 1.80A {Bacillus anthracis} PDB: 2a1y_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=2.2e-36 Score=293.76 Aligned_cols=262 Identities=18% Similarity=0.189 Sum_probs=185.9
Q ss_pred hhHHHhHhcccceeeeccc--cCCCCCCccceeEcCcccCCceEecccccccccCChhhHHHHHHHHHc-CCceecCCCC
Q 017781 34 WTLQENRNAFSRILFRPRI--LIDVSKIDMNTTVLGFKISMPIMIAPTAMQKMAHPEGEYATARAASAA-GTIMTLSSWS 110 (366)
Q Consensus 34 ~t~~~N~~~f~~i~l~pr~--l~~~~~vd~st~l~g~~l~~Pi~iApm~~~~l~~~~~e~~la~aa~~~-G~~~~vs~~~ 110 (366)
+-...|..+||+|.|+||+ +.+++++||+|+|+|+++++||++|||++.+ +.++++++.+. |+.+...++.
T Consensus 7 ~~~~~~~~~fd~v~l~p~~~~~~~~~~vdl~t~i~g~~l~~Pi~~a~mag~s------~~~la~a~~~~gg~g~~~~~~~ 80 (336)
T 1ypf_A 7 HHHMGNVFDYEDIQLIPAKCIVNSRSECDTTVTLGKHKFKLPVVPANMQTII------DERIATYLAENNYFYIMHRFQP 80 (336)
T ss_dssp -----CCCCGGGEEECCCCCCCSSGGGCBCCEEETTEEESSSEEECSSTTTC------CHHHHHHHHHTTCCCCCCCSSG
T ss_pred cccccccCCcceEEEecccCCCCCcccCcceEEECCEEecCcEEECCCCCCC------hHHHHHHHHhCCCEEEecCCCC
Confidence 3456799999999999999 5789999999999999999999999998754 45677765554 4444443322
Q ss_pred CCCHHHHhcc--CCCceEEEeeecCCHHHHHHHHHHHHHcC--CCEEEEecCCCCCcchhHHHhhhcCCCCccccccccc
Q 017781 111 TSSVEEVAST--GPGIRFFQLYVYKDRNVVAQLVRRAERAG--FKAIALTVDTPRLGRREADIKNRFTLPPFLTLKNFQG 186 (366)
Q Consensus 111 ~~~~e~i~~~--~~~~~~~Qly~~~d~~~~~~~l~ra~~~G--~~ai~vtvd~p~~g~r~~d~~~~~~~p~~~~~~~~~~ 186 (366)
....+.+.+. ..-+...|+ +.+.+. .+.++.+.++| ++.+.+++.
T Consensus 81 ~~~~~~i~~~~~~g~~v~v~~--g~~~~~-~~~a~~~~~~g~~~~~i~i~~~---------------------------- 129 (336)
T 1ypf_A 81 EKRISFIRDMQSRGLIASISV--GVKEDE-YEFVQQLAAEHLTPEYITIDIA---------------------------- 129 (336)
T ss_dssp GGHHHHHHHHHHTTCCCEEEE--CCSHHH-HHHHHHHHHTTCCCSEEEEECS----------------------------
T ss_pred HHHHHHHHHHHhcCCeEEEeC--CCCHHH-HHHHHHHHhcCCCCCEEEEECC----------------------------
Confidence 1111111111 111334442 222322 23345555556 555544321
Q ss_pred cccCCCccccchhhHHHhhhccCCCCCHHHHHHHHHhcCCCEEEEe-ccCHHH----HHcCCcEEEEcCCCccCCC----
Q 017781 187 LDLGKMDEANDSGLAAYVAGQIDRSLSWKDVKWLQTITKLPILVKG-VLTAED----VQAGAAGIIVSNHGARQLD---- 257 (366)
Q Consensus 187 ~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~i~~lr~~~~~pv~vK~-v~~~~d----~~aGad~I~vs~~gg~~~~---- 257 (366)
.+++...|+.|+++|+.++.|+++|+ +.+.++ .++|||+|+++||||++.+
T Consensus 130 --------------------~G~~~~~~~~i~~lr~~~~~~~vi~G~v~s~e~A~~a~~aGad~Ivvs~hgG~~~~~~~~ 189 (336)
T 1ypf_A 130 --------------------HGHSNAVINMIQHIKKHLPESFVIAGNVGTPEAVRELENAGADATKVGIGPGKVCITKIK 189 (336)
T ss_dssp --------------------SCCSHHHHHHHHHHHHHCTTSEEEEEEECSHHHHHHHHHHTCSEEEECSSCSTTCHHHHH
T ss_pred --------------------CCCcHHHHHHHHHHHHhCCCCEEEECCcCCHHHHHHHHHcCCCEEEEecCCCceeecccc
Confidence 01234578899999999977778888 888887 9999999999999998754
Q ss_pred --CCcc--hHHHHHHHHHHcCCCceEEEecCCCCHHHHHHHHHhCcCEEEecHHHH--------------------HHhh
Q 017781 258 --YVPA--TIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFIGRPVV--------------------YSLA 313 (366)
Q Consensus 258 --~~~~--~~~~l~~i~~~~~~~i~vi~~GGI~~~~dv~kalalGAd~V~igr~~l--------------------~~l~ 313 (366)
++.+ +++.|+++++++ ++|||++|||+++.|++|+|++|||+|++||+|+ |+++
T Consensus 190 ~~~g~~g~~~~~l~~v~~~~--~ipVIa~GGI~~g~Dv~kalalGAdaV~iGr~~l~t~Es~~~~~~~~g~~~k~~~g~~ 267 (336)
T 1ypf_A 190 TGFGTGGWQLAALRWCAKAA--SKPIIADGGIRTNGDVAKSIRFGATMVMIGSLFAGHEESPGETIEKDGKLYKEYFGSA 267 (336)
T ss_dssp HSCSSTTCHHHHHHHHHHTC--SSCEEEESCCCSTHHHHHHHHTTCSEEEESGGGTTCTTSSSCCC--------------
T ss_pred cCcCCchhHHHHHHHHHHHc--CCcEEEeCCCCCHHHHHHHHHcCCCEEEeChhhhccccCCCceeeeCCeEeeeeeccc
Confidence 3445 789999999988 8999999999999999999999999999999999 8888
Q ss_pred hcCHHHHH-----------------HHHHHHHHHHHHHHHHcCCCChhhhcccceeec
Q 017781 314 AEGEKGVR-----------------RVLEMLREEFELAMALSGCRSLKEITRDHIVTE 354 (366)
Q Consensus 314 ~~G~~gv~-----------------~~~~~l~~el~~~m~~~G~~~l~el~~~~l~~~ 354 (366)
+.|++|+. ++++.+++||+..|.++|+++++||++..++..
T Consensus 268 ~~~~~g~~~~~~g~~~~~~~~g~~~~~~~~l~~el~~~m~~~G~~~i~el~~~~~~~~ 325 (336)
T 1ypf_A 268 SEFQKGEKKNVEGKKMFVEHKGSLEDTLIEMEQDLQSSISYAGGTKLDSIRTVDYVVV 325 (336)
T ss_dssp ---------CTTSCCSSSSCCCCHHHHHHHHHHHHHHHHHHTTSSBGGGGGGCCEEEC
T ss_pred chhhccCccccccceeeecccccHHHHHHHHHHHHHHHHHHhCcccHHHhCcCCEEEE
Confidence 87887766 899999999999999999999999998876654
|
| >2c6q_A GMP reductase 2; TIM barrel, metal-binding, NADP, oxidoreductase, potassium; HET: IMP NDP; 1.70A {Homo sapiens} PDB: 2bzn_A* 2a7r_A* 2ble_A* 2bwg_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=2.6e-35 Score=287.42 Aligned_cols=257 Identities=20% Similarity=0.218 Sum_probs=197.7
Q ss_pred hHHHhHhcccceeeeccccC-CC-CCCccceeEc-----CcccCCceEecccccccccCChhhHHHHHHHHHcCCceecC
Q 017781 35 TLQENRNAFSRILFRPRILI-DV-SKIDMNTTVL-----GFKISMPIMIAPTAMQKMAHPEGEYATARAASAAGTIMTLS 107 (366)
Q Consensus 35 t~~~N~~~f~~i~l~pr~l~-~~-~~vd~st~l~-----g~~l~~Pi~iApm~~~~l~~~~~e~~la~aa~~~G~~~~vs 107 (366)
-+++|..+||+|.|+|+.+. ++ +++||+|+|+ +.+++.||++|||++. ++.++|.+++++|..++++
T Consensus 14 ~~~~~~~~fddv~l~p~~~~~~~~~~vdl~t~l~~~~~~~~~l~~PIi~ApM~~~------~~~~lA~Ava~~Gglg~i~ 87 (351)
T 2c6q_A 14 LVPRGSLDFKDVLLRPKRSTLKSRSEVDLTRSFSFRNSKQTYSGVPIIAANMDTV------GTFEMAKVLCKFSLFTAVH 87 (351)
T ss_dssp -----CCCGGGEEECCCCBCCCCGGGCBCCEEEECTTTCCEEEECCEEECSSTTT------SCHHHHHHHHHTTCEEECC
T ss_pred ccccCCCCcceEEEECCCCCCCccccceeEEEeccccCcCccccCCEEECCCCCC------CcHHHHHHHHHCCCEEEEc
Confidence 36789999999999999986 67 7999999999 9999999999999853 4789999999999888886
Q ss_pred CCCCCCHHHHhcc---CCC---ceEEEeeecCCHHHHHHHHHHHHHc--CCCEEEEecCCCCCcchhHHHhhhcCCCCcc
Q 017781 108 SWSTSSVEEVAST---GPG---IRFFQLYVYKDRNVVAQLVRRAERA--GFKAIALTVDTPRLGRREADIKNRFTLPPFL 179 (366)
Q Consensus 108 ~~~~~~~e~i~~~---~~~---~~~~Qly~~~d~~~~~~~l~ra~~~--G~~ai~vtvd~p~~g~r~~d~~~~~~~p~~~ 179 (366)
. +.++|++.+. .|. .....+ +.+.+.. +.++.+.+. |++++.+++..
T Consensus 88 ~--~~s~e~~~~~i~~~p~~l~~v~~~~--g~~~~~~-~~~~~l~~~~~g~~~i~i~~~~-------------------- 142 (351)
T 2c6q_A 88 K--HYSLVQWQEFAGQNPDCLEHLAASS--GTGSSDF-EQLEQILEAIPQVKYICLDVAN-------------------- 142 (351)
T ss_dssp T--TCCHHHHHHHHHHCGGGCTTEEEEE--CSSHHHH-HHHHHHHHHCTTCCEEEEECSC--------------------
T ss_pred C--CCCHHHHHHHHhhCchhhheeEeec--CCChHHH-HHHHHHHhccCCCCEEEEEecC--------------------
Confidence 4 5677776543 221 122222 2233322 334444444 77776654321
Q ss_pred ccccccccccCCCccccchhhHHHhhhccCCCCCHHHHHHHHHhc-CCCEEEEeccCHHH----HHcCCcEEEEcCCCcc
Q 017781 180 TLKNFQGLDLGKMDEANDSGLAAYVAGQIDRSLSWKDVKWLQTIT-KLPILVKGVLTAED----VQAGAAGIIVSNHGAR 254 (366)
Q Consensus 180 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~i~~lr~~~-~~pv~vK~v~~~~d----~~aGad~I~vs~~gg~ 254 (366)
.++...|+.|+++|+.+ ++||++|.+.+.++ .++|+|+|+|++++|.
T Consensus 143 ----------------------------g~~~~~~~~i~~lr~~~~~~~vi~g~v~t~e~A~~a~~aGaD~I~v~~g~G~ 194 (351)
T 2c6q_A 143 ----------------------------GYSEHFVEFVKDVRKRFPQHTIMAGNVVTGEMVEELILSGADIIKVGIGPGS 194 (351)
T ss_dssp ----------------------------TTBHHHHHHHHHHHHHCTTSEEEEEEECSHHHHHHHHHTTCSEEEECSSCST
T ss_pred ----------------------------CCcHHHHHHHHHHHHhcCCCeEEEEeCCCHHHHHHHHHhCCCEEEECCCCCc
Confidence 01223578999999999 89999999999988 9999999999988763
Q ss_pred -----CC-CCCcchHHHHHHHHHHcCC-CceEEEecCCCCHHHHHHHHHhCcCEEEecHHHH------------------
Q 017781 255 -----QL-DYVPATIMALEEVVKATQG-RIPVFLDGGVRRGTDVFKALALGASGIFIGRPVV------------------ 309 (366)
Q Consensus 255 -----~~-~~~~~~~~~l~~i~~~~~~-~i~vi~~GGI~~~~dv~kalalGAd~V~igr~~l------------------ 309 (366)
+. .++.+++..|.++.+++.. ++|||++|||+++.|++|||++|||+|++||+|+
T Consensus 195 ~~~~r~~~g~~~p~~~~l~~v~~~~~~~~ipvIa~GGI~~g~di~kAlalGA~~V~vG~~fl~~~Es~~~~~~~~g~~~k 274 (351)
T 2c6q_A 195 VCTTRKKTGVGYPQLSAVMECADAAHGLKGHIISDGGCSCPGDVAKAFGAGADFVMLGGMLAGHSESGGELIERDGKKYK 274 (351)
T ss_dssp TBCHHHHHCBCCCHHHHHHHHHHHHHHTTCEEEEESCCCSHHHHHHHHHTTCSEEEESTTTTTBTTSCSCEEEETTEEEE
T ss_pred CcCccccCCCCccHHHHHHHHHHHHhhcCCcEEEeCCCCCHHHHHHHHHcCCCceeccHHHhcCccCcchhhhhcCeeee
Confidence 22 3467888889888876532 7999999999999999999999999999999997
Q ss_pred --HHhhhcC--------------HHH----------HHHHHHHHHHHHHHHHHHcCCCChhhhcccc
Q 017781 310 --YSLAAEG--------------EKG----------VRRVLEMLREEFELAMALSGCRSLKEITRDH 350 (366)
Q Consensus 310 --~~l~~~G--------------~~g----------v~~~~~~l~~el~~~m~~~G~~~l~el~~~~ 350 (366)
|++++.| ++| |.++++.|..||+..|.++|+++++||++..
T Consensus 275 ~~~g~~~~~a~~~~~g~~~~~~~~~g~~~~~~~~g~v~~~~~~l~~~l~~~m~~~G~~~i~~l~~~~ 341 (351)
T 2c6q_A 275 LFYGMSSEMAMKKYAGGVAEYRASEGKTVEVPFKGDVEHTIRDILGGIRSTCTYVGAAKLKELSRRT 341 (351)
T ss_dssp EEECTTBHHHHHHHSSSCCTTCCCCBCEEEEECCBCHHHHHHHHHHHHHHHHHHHTCSBGGGHHHHC
T ss_pred eccccccHhhhhcccccccccccccceEEEeeccCcHHHHHHHHHHHHHHHHHHcCCCCHHHHhhCC
Confidence 6665443 367 9999999999999999999999999998663
|
| >3r2g_A Inosine 5'-monophosphate dehydrogenase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 1.94A {Legionella pneumophila subsp} | Back alignment and structure |
|---|
Probab=100.00 E-value=3.6e-34 Score=278.78 Aligned_cols=250 Identities=18% Similarity=0.236 Sum_probs=204.3
Q ss_pred hcccceeeeccccCCCC--CCccc--eeEcCcccCCceEecccccccccCChhhHHHHHHHHHcCCceecCCCCCCCHHH
Q 017781 41 NAFSRILFRPRILIDVS--KIDMN--TTVLGFKISMPIMIAPTAMQKMAHPEGEYATARAASAAGTIMTLSSWSTSSVEE 116 (366)
Q Consensus 41 ~~f~~i~l~pr~l~~~~--~vd~s--t~l~g~~l~~Pi~iApm~~~~l~~~~~e~~la~aa~~~G~~~~vs~~~~~~~e~ 116 (366)
.+||+|.|+|+.+.+++ ++|++ |+|+|.+++.||++||| ++.+|.++|++++++|.++++++. .++|+
T Consensus 8 ~~fddv~l~P~~~~~~~r~~vd~~~~t~l~g~~l~~Pii~ApM------~~vte~~lA~A~a~~Gg~gvi~~~--~s~ee 79 (361)
T 3r2g_A 8 ITFDDVLLVPSYNHHESRRVVETTSTDRLGKLTLNLPVISANM------DTITESNMANFMHSKGAMGALHRF--MTIEE 79 (361)
T ss_dssp CCGGGEEECCCCCCSCTTCCCCCCEECTTSSCEESSCEEECCS------TTTCSHHHHHHHHHTTCEEBCCSC--SCHHH
T ss_pred cccceEEEECCCCCCCccccccceeeEEECCEEcCCCEEECCC------CCchHHHHHHHHHHcCCCEEEeCC--CCHHH
Confidence 47999999999998776 76654 59999999999999999 355799999999999999999864 78898
Q ss_pred HhccCCCceEEEeeecCCHHHHHHHHHHHHHcCCCEEEEecCCCCCcchhHHHhhhcCCCCccccccccccccCCCcccc
Q 017781 117 VASTGPGIRFFQLYVYKDRNVVAQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLTLKNFQGLDLGKMDEAN 196 (366)
Q Consensus 117 i~~~~~~~~~~Qly~~~d~~~~~~~l~ra~~~G~~ai~vtvd~p~~g~r~~d~~~~~~~p~~~~~~~~~~~~~~~~~~~~ 196 (366)
+.+......|+|.|...+++...+.++++.++|++.|.+ |++..
T Consensus 80 ~~~~i~~~~~~~~~~~g~~~~~~e~~~~a~~aGvdvI~i--d~a~G---------------------------------- 123 (361)
T 3r2g_A 80 NIQEFKKCKGPVFVSVGCTENELQRAEALRDAGADFFCV--DVAHA---------------------------------- 123 (361)
T ss_dssp HHHHHHTCCSCCBEEECSSHHHHHHHHHHHHTTCCEEEE--ECSCC----------------------------------
T ss_pred HHHHHhhcceEEEEEcCCCHHHHHHHHHHHHcCCCEEEE--eCCCC----------------------------------
Confidence 876544456788887778888889999999999996655 43310
Q ss_pred chhhHHHhhhccCCCCCHHHHHHHHHhc-CCCEEEEeccCHHH----HHcCCcEEEEcCCCccCC------CCCcchHHH
Q 017781 197 DSGLAAYVAGQIDRSLSWKDVKWLQTIT-KLPILVKGVLTAED----VQAGAAGIIVSNHGARQL------DYVPATIMA 265 (366)
Q Consensus 197 ~~~~~~~~~~~~d~~~~~~~i~~lr~~~-~~pv~vK~v~~~~d----~~aGad~I~vs~~gg~~~------~~~~~~~~~ 265 (366)
.+...|+.|+++|+.+ ++||++|.+.++++ .++|+|+|+|++|+|++. ..+.+.++.
T Consensus 124 ------------~~~~~~e~I~~ir~~~~~~~Vi~G~V~T~e~A~~a~~aGaD~I~Vg~g~G~~~~tr~~~g~g~p~l~a 191 (361)
T 3r2g_A 124 ------------HAKYVGKTLKSLRQLLGSRCIMAGNVATYAGADYLASCGADIIKAGIGGGSVCSTRIKTGFGVPMLTC 191 (361)
T ss_dssp ------------SSHHHHHHHHHHHHHHTTCEEEEEEECSHHHHHHHHHTTCSEEEECCSSSSCHHHHHHHCCCCCHHHH
T ss_pred ------------CcHhHHHHHHHHHHhcCCCeEEEcCcCCHHHHHHHHHcCCCEEEEcCCCCcCccccccCCccHHHHHH
Confidence 0112478899999998 78999999999988 999999999999988653 235678888
Q ss_pred HHHHHHHcCCCceEEEecCCCCHHHHHHHHHhCcCEEEecHHHHHHhhh--------c----------------------
Q 017781 266 LEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFIGRPVVYSLAA--------E---------------------- 315 (366)
Q Consensus 266 l~~i~~~~~~~i~vi~~GGI~~~~dv~kalalGAd~V~igr~~l~~l~~--------~---------------------- 315 (366)
+.++++.+ . |||++|||+++.|++|||++|||+|++||+|+-...+ +
T Consensus 192 I~~~~~~~--~-PVIAdGGI~~~~di~kALa~GAd~V~iGr~f~~t~Espg~~~~~~~g~~~k~y~Gm~s~~~~~~~~~~ 268 (361)
T 3r2g_A 192 IQDCSRAD--R-SIVADGGIKTSGDIVKALAFGADFVMIGGMLAGSAPTPGEVFQKDDGSKVKRYRGMASREAQEAFLGQ 268 (361)
T ss_dssp HHHHTTSS--S-EEEEESCCCSHHHHHHHHHTTCSEEEESGGGTTBTTSSSCEEECTTSCEEEEESCCHHHHHHHHHTTC
T ss_pred HHHHHHhC--C-CEEEECCCCCHHHHHHHHHcCCCEEEEChHHhCCccCCceeEEecCCeEEEEEecCCCcchhhhhhcc
Confidence 88887655 3 9999999999999999999999999999998632110 0
Q ss_pred --------CH-------HHHHHHHHHHHHHHHHHHHHcCCCChhhhccc
Q 017781 316 --------GE-------KGVRRVLEMLREEFELAMALSGCRSLKEITRD 349 (366)
Q Consensus 316 --------G~-------~gv~~~~~~l~~el~~~m~~~G~~~l~el~~~ 349 (366)
|- ..+++++..|...|+..|.++|+.+|+||+..
T Consensus 269 ~~~~~~~eG~~~~v~~~g~~~~~~~~~~~glr~~m~y~G~~~i~~l~~~ 317 (361)
T 3r2g_A 269 MHEWKTAEGVATEVPFKENPDGIIADIIGGLRSGLTYAGADSISELQRK 317 (361)
T ss_dssp CSTTCCSCCCCEEEECBCCHHHHHHHHHHHHHHHHHHTTCSSHHHHHHT
T ss_pred ccccccCCcceeecCCCCCHHHHHHHHHHHHHHHhhhcCcccHHHHHhC
Confidence 10 13789999999999999999999999999654
|
| >1eep_A Inosine 5'-monophosphate dehydrogenase; alpha-beta barrel, TIM barrel, IMPDH, IMP dehydrogenase, LOO purine biosynthesis, oxidoreductase; 2.40A {Borrelia burgdorferi} SCOP: c.1.5.1 | Back alignment and structure |
|---|
Probab=99.97 E-value=6.8e-31 Score=261.17 Aligned_cols=297 Identities=18% Similarity=0.223 Sum_probs=180.8
Q ss_pred HhcccceeeeccccC-CCCCCccceeEc-CcccCCceEecccccccccCChhhHHHHHHHHHcCCceecCCCCCCCHHHH
Q 017781 40 RNAFSRILFRPRILI-DVSKIDMNTTVL-GFKISMPIMIAPTAMQKMAHPEGEYATARAASAAGTIMTLSSWSTSSVEEV 117 (366)
Q Consensus 40 ~~~f~~i~l~pr~l~-~~~~vd~st~l~-g~~l~~Pi~iApm~~~~l~~~~~e~~la~aa~~~G~~~~vs~~~~~~~e~i 117 (366)
..+||+|.|+|+.+. +++++||+|+|+ |.++++||++|||++++ +.+++.++++.|...+++ ++.++|++
T Consensus 9 ~~~fd~v~l~p~~~~~~~~~vdlst~l~~g~~l~~Pii~Apm~~~~------~~ela~a~a~aGglg~i~--~~~s~e~~ 80 (404)
T 1eep_A 9 ALTFDDVSLIPRKSSVLPSEVSLKTQLTKNISLNIPFLSSAMDTVT------ESQMAIAIAKEGGIGIIH--KNMSIEAQ 80 (404)
T ss_dssp CCCGGGEEECCCCCCSCGGGCCCCEESSSSCEESSSEEECCCTTTC------SHHHHHHHHHHTSEEEEC--SSSCHHHH
T ss_pred CCCcccEEEccCCCCcCccccccceeccCCcccCCCEEeCCCCCCC------CHHHHHHHHHCCCEEEEC--CCCCHHHH
Confidence 357999999999997 789999999999 99999999999998743 556777788888888886 45678877
Q ss_pred hccCCCceEEE----eeecCCHHHHH-HHHHHHHHc----CCCEEEEecCCCCCcchhHHHhhhcCCCCccccccccccc
Q 017781 118 ASTGPGIRFFQ----LYVYKDRNVVA-QLVRRAERA----GFKAIALTVDTPRLGRREADIKNRFTLPPFLTLKNFQGLD 188 (366)
Q Consensus 118 ~~~~~~~~~~Q----ly~~~d~~~~~-~~l~ra~~~----G~~ai~vtvd~p~~g~r~~d~~~~~~~p~~~~~~~~~~~~ 188 (366)
.+..+...+++ ++...+..... .++...... +.+.+..+.+.|.. .|..+-+..+ + .++....
T Consensus 81 ~~~~~~~~~~~~~~g~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~p~~-~~~~~~~~~~----~---~~i~~~~ 152 (404)
T 1eep_A 81 RKEIEKVKTYKFQKTINTNGDTNEQKPEIFTAKQHLEKSDAYKNAEHKEDFPNA-CKDLNNKLRV----G---AAVSIDI 152 (404)
T ss_dssp HHHHHHHHTCC--------------------------------------CCTTC-CBCTTSCBCC----E---EEECSCT
T ss_pred HHHHHHHHhhccCCCceeccccccccccccccCCCCCHHHHHHHHHHhhhcchh-hhhcccCceE----E---EEeCCCh
Confidence 54322111221 22222211000 000000000 01111112222321 1110000000 0 0000000
Q ss_pred c-CCCccccchhhHHHh---hhccCCCCCHHHHHHHHHhc-CCCEEEEeccCHHH----HHcCCcEEEEcCCCccC----
Q 017781 189 L-GKMDEANDSGLAAYV---AGQIDRSLSWKDVKWLQTIT-KLPILVKGVLTAED----VQAGAAGIIVSNHGARQ---- 255 (366)
Q Consensus 189 ~-~~~~~~~~~~~~~~~---~~~~d~~~~~~~i~~lr~~~-~~pv~vK~v~~~~d----~~aGad~I~vs~~gg~~---- 255 (366)
. ..............+ ....++...|+.++++|+.+ ++||+++++.+.++ .++|+|+|+++.++|..
T Consensus 153 ~~~~~a~~~~~~G~d~i~i~~~~g~~~~~~e~i~~ir~~~~~~pviv~~v~~~~~a~~a~~~Gad~I~vg~~~G~~~~~~ 232 (404)
T 1eep_A 153 DTIERVEELVKAHVDILVIDSAHGHSTRIIELIKKIKTKYPNLDLIAGNIVTKEAALDLISVGADCLKVGIGPGSICTTR 232 (404)
T ss_dssp THHHHHHHHHHTTCSEEEECCSCCSSHHHHHHHHHHHHHCTTCEEEEEEECSHHHHHHHHTTTCSEEEECSSCSTTSHHH
T ss_pred hHHHHHHHHHHCCCCEEEEeCCCCChHHHHHHHHHHHHHCCCCeEEEcCCCcHHHHHHHHhcCCCEEEECCCCCcCcCcc
Confidence 0 000000000000000 01134455788999999999 89999999988887 89999999996544431
Q ss_pred --CCCCcchHHHHHHHHHHcC-CCceEEEecCCCCHHHHHHHHHhCcCEEEecHHHH--------------------HHh
Q 017781 256 --LDYVPATIMALEEVVKATQ-GRIPVFLDGGVRRGTDVFKALALGASGIFIGRPVV--------------------YSL 312 (366)
Q Consensus 256 --~~~~~~~~~~l~~i~~~~~-~~i~vi~~GGI~~~~dv~kalalGAd~V~igr~~l--------------------~~l 312 (366)
.+.+.+.++.+.++.+.+. .++|||++|||+++.|+.|++++|||+|++||+|+ +++
T Consensus 233 ~~~~~g~p~~~~l~~v~~~~~~~~ipVia~GGI~~~~d~~~ala~GAd~V~iG~~~l~~~e~~~~~~~~~g~~~k~~~g~ 312 (404)
T 1eep_A 233 IVAGVGVPQITAICDVYEACNNTNICIIADGGIRFSGDVVKAIAAGADSVMIGNLFAGTKESPSEEIIYNGKKFKSYVGM 312 (404)
T ss_dssp HHHCCCCCHHHHHHHHHHHHTTSSCEEEEESCCCSHHHHHHHHHHTCSEEEECHHHHTBTTSSSCEEEETTEEEEC----
T ss_pred ccCCCCcchHHHHHHHHHHHhhcCceEEEECCCCCHHHHHHHHHcCCCHHhhCHHHhcCCCCCcchhhhCCeEEeecCCC
Confidence 1235567888888887654 37999999999999999999999999999999995 333
Q ss_pred hh-------------------------cCHHH-------HHHHHHHHHHHHHHHHHHcCCCChhhhccccee
Q 017781 313 AA-------------------------EGEKG-------VRRVLEMLREEFELAMALSGCRSLKEITRDHIV 352 (366)
Q Consensus 313 ~~-------------------------~G~~g-------v~~~~~~l~~el~~~m~~~G~~~l~el~~~~l~ 352 (366)
+. +|.++ |.++++.|.+||+..|.++|+++++||++..+.
T Consensus 313 ~~~g~~~~g~~~~~~~g~~~~~~~l~~~g~~~~v~~~~~v~~~~~~l~~el~~~m~~~G~~~i~~l~~~~~~ 384 (404)
T 1eep_A 313 GSISAMKRGSKSRYFQLENNEPKKLVPEGIEGMVPYSGKLKDILTQLKGGLMSGMGYLGAATISDLKINSKF 384 (404)
T ss_dssp --------------------------------CEECCBCHHHHHHHHHHHHHHHHHHHTCSSHHHHHHSCCE
T ss_pred CCHHHHhhccccchhcccccccccccCceeEEeccCCccHHHHHHHHHHHHHHHHHHhCCCCHHHHhhcCcE
Confidence 22 22333 889999999999999999999999999987544
|
| >3khj_A Inosine-5-monophosphate dehydrogenase; enzyme-inhibitor complex, oxidoreductase; HET: IMP C64; 2.80A {Cryptosporidium parvum} | Back alignment and structure |
|---|
Probab=99.93 E-value=1.2e-24 Score=212.71 Aligned_cols=247 Identities=21% Similarity=0.288 Sum_probs=183.1
Q ss_pred hcccceeeeccccC--CCCCCccceeEc-CcccCCceEecccccccccCChhhHHHHHHHHHcCCceecCCCCCCCHHHH
Q 017781 41 NAFSRILFRPRILI--DVSKIDMNTTVL-GFKISMPIMIAPTAMQKMAHPEGEYATARAASAAGTIMTLSSWSTSSVEEV 117 (366)
Q Consensus 41 ~~f~~i~l~pr~l~--~~~~vd~st~l~-g~~l~~Pi~iApm~~~~l~~~~~e~~la~aa~~~G~~~~vs~~~~~~~e~i 117 (366)
..||++.|+|+ +. +.+++|++|+|. +..+..||+.|||++.+ +..+|.+.++.|...++.. +.+.+++
T Consensus 13 ~~fddv~l~p~-~~~~~~~~vdl~t~l~~~~~l~~Pii~apM~~vt------~~~lA~avA~~GGlgii~~--~~s~e~~ 83 (361)
T 3khj_A 13 LTFEDILLVPN-YSEVLPREVSLETKLTKNVSLKIPLISSAMDTVT------EHLMAVGMARLGGIGIIHK--NMDMESQ 83 (361)
T ss_dssp CCGGGEEECCC-CBCCCGGGCCCCEESSSSCEESSSEEECSSTTTC------SHHHHHHHHHTTCEEEECS--SSCHHHH
T ss_pred CCcceEEEECC-CCCCCHHHccCceecccccccCCCEEeecCCCCC------cHHHHHHHHHcCCCeEEec--CCCHHHH
Confidence 47999999998 44 457899999997 68999999999998653 6689998777776666643 4455544
Q ss_pred hc-------cCCCceEEEeeecCCHHHHHHHHHHHHHcCCCEEEEecCCCCCcchhHHHhhhcCCCCccccccccccccC
Q 017781 118 AS-------TGPGIRFFQLYVYKDRNVVAQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLTLKNFQGLDLG 190 (366)
Q Consensus 118 ~~-------~~~~~~~~Qly~~~d~~~~~~~l~ra~~~G~~ai~vtvd~p~~g~r~~d~~~~~~~p~~~~~~~~~~~~~~ 190 (366)
.+ ....+...++... + .+.++.+.++|++.++|+ ++.
T Consensus 84 ~~~I~~vk~~~~~pvga~ig~~-~----~e~a~~l~eaGad~I~ld--~a~----------------------------- 127 (361)
T 3khj_A 84 VNEVLKVKNSGGLRVGAAIGVN-E----IERAKLLVEAGVDVIVLD--SAH----------------------------- 127 (361)
T ss_dssp HHHHHHHHHTTCCCCEEEECTT-C----HHHHHHHHHTTCSEEEEC--CSC-----------------------------
T ss_pred HHHHHHHHhccCceEEEEeCCC-H----HHHHHHHHHcCcCeEEEe--CCC-----------------------------
Confidence 21 1224566676542 2 566778888999988764 221
Q ss_pred CCccccchhhHHHhhhccCCCCCHHHHHHHHHhcCCCEEEEeccCHHH----HHcCCcEEEEcCCCccC------CCCCc
Q 017781 191 KMDEANDSGLAAYVAGQIDRSLSWKDVKWLQTITKLPILVKGVLTAED----VQAGAAGIIVSNHGARQ------LDYVP 260 (366)
Q Consensus 191 ~~~~~~~~~~~~~~~~~~d~~~~~~~i~~lr~~~~~pv~vK~v~~~~d----~~aGad~I~vs~~gg~~------~~~~~ 260 (366)
.++....+.++++|+.+++||+++.+.+.++ .++|+|+|+++.++|.. ...+.
T Consensus 128 -----------------G~~~~~~~~i~~i~~~~~~~Vivg~v~t~e~A~~l~~aGaD~I~VG~~~Gs~~~tr~~~g~g~ 190 (361)
T 3khj_A 128 -----------------GHSLNIIRTLKEIKSKMNIDVIVGNVVTEEATKELIENGADGIKVGIGPGSICTTRIVAGVGV 190 (361)
T ss_dssp -----------------CSBHHHHHHHHHHHHHCCCEEEEEEECSHHHHHHHHHTTCSEEEECSSCCTTCCHHHHTCBCC
T ss_pred -----------------CCcHHHHHHHHHHHHhcCCcEEEccCCCHHHHHHHHHcCcCEEEEecCCCcCCCcccccCCCC
Confidence 0122234678999998899999999999887 99999999996554421 23456
Q ss_pred chHHHHHHHHHHcCC-CceEEEecCCCCHHHHHHHHHhCcCEEEecHHHH--------------------HHhhhc----
Q 017781 261 ATIMALEEVVKATQG-RIPVFLDGGVRRGTDVFKALALGASGIFIGRPVV--------------------YSLAAE---- 315 (366)
Q Consensus 261 ~~~~~l~~i~~~~~~-~i~vi~~GGI~~~~dv~kalalGAd~V~igr~~l--------------------~~l~~~---- 315 (366)
+.++.+.++++.... ++|||++|||+++.|+.|++++|||+|++|++|+ |+++..
T Consensus 191 p~~~~i~~v~~~~~~~~iPVIA~GGI~~~~di~kala~GAd~V~vGs~~~~t~Esp~~~~~~~g~~~k~y~gm~s~~a~~ 270 (361)
T 3khj_A 191 PQITAIEKCSSVASKFGIPIIADGGIRYSGDIGKALAVGASSVMIGSILAGTEESPGEKELIGDTVYKYYRGMGSVGAMK 270 (361)
T ss_dssp CHHHHHHHHHHHHHHHTCCEEEESCCCSHHHHHHHHHHTCSEEEESTTTTTBTTSSCEEEEETTEEEEEC----------
T ss_pred CcHHHHHHHHHHHhhcCCeEEEECCCCCHHHHHHHHHcCCCEEEEChhhhcCCcCCcchhhcCCeEEEEeeccchHHHHh
Confidence 788888888665321 7999999999999999999999999999999884 232200
Q ss_pred ----------C-------HHH----------HHHHHHHHHHHHHHHHHHcCCCChhhhccc
Q 017781 316 ----------G-------EKG----------VRRVLEMLREEFELAMALSGCRSLKEITRD 349 (366)
Q Consensus 316 ----------G-------~~g----------v~~~~~~l~~el~~~m~~~G~~~l~el~~~ 349 (366)
+ ++| +++++..+...|+..|.++|+.+++||+..
T Consensus 271 ~~~~~~y~~~~~~~~~~~~eg~~~~v~~~g~~~~~~~~~~~gl~~~~~~~g~~~~~~~~~~ 331 (361)
T 3khj_A 271 SGSGDRYFQEKRPENKMVPEGIEGRVKYKGEMEGVVYQLVGGLRSCMGYLGSASIEELWKK 331 (361)
T ss_dssp -----------------------CEEECCBCHHHHHHHHHHHHHHHHHHTTCSSHHHHHHH
T ss_pred ccchhhhhcccccccccCCCccEEeCCCCCCHHHHHHHHHHHHHHhhhhcCCccHHHHHhC
Confidence 1 122 778899999999999999999999999754
|
| >2e6f_A Dihydroorotate dehydrogenase; chagas disease, pyrimidine biosynthesis, fumarate reductase, energy metabolism, redox homeostasis, flavoprotein; HET: FMN OXC; 1.26A {Trypanosoma cruzi} PDB: 2e6a_A* 2e6d_A* 2e68_A* 2djl_A* 2djx_A* 3c3n_A* 2b4g_A* 3c61_A* 3mhu_A* 3mjy_A* | Back alignment and structure |
|---|
Probab=99.93 E-value=2e-24 Score=207.46 Aligned_cols=238 Identities=18% Similarity=0.181 Sum_probs=178.5
Q ss_pred CccceeEcCcccCCceEecccccccccCChhhHHHHHHHHHcCCceecCCC-C--------------------------C
Q 017781 59 IDMNTTVLGFKISMPIMIAPTAMQKMAHPEGEYATARAASAAGTIMTLSSW-S--------------------------T 111 (366)
Q Consensus 59 vd~st~l~g~~l~~Pi~iApm~~~~l~~~~~e~~la~aa~~~G~~~~vs~~-~--------------------------~ 111 (366)
+||+++++|+++++||++||+.. +.+....+.+.+.|+++++... + +
T Consensus 2 ~dl~~~i~g~~l~nPi~~Aag~~------~~~~~~~~~~~~~G~g~v~~~~v~~~~~~gn~~pr~~~~~~~~in~~g~~~ 75 (314)
T 2e6f_A 2 MCLKLNLLDHVFANPFMNAAGVL------CSTEEDLRCMTASSSGALVSKSCTSAPRDGNPEPRYMAFPLGSINSMGLPN 75 (314)
T ss_dssp CCCCEEETTEEESSSEEECTTSS------CSSHHHHHHHHHSSCSCEECCCBCSSCBCCSCSCCEEEETTEEEECCCCCB
T ss_pred CCcceEECCEecCCCcEECCCCC------CCCHHHHHHHHHCCCCEEEeCccCCcccCCCCCCcEEecccceeecCCCCC
Confidence 58999999999999999998532 1244567778999999865422 1 1
Q ss_pred CCHH----HHhcc-C--CCceEEEeeecCCHHHHHHHHHHHHHcCCC---EEEEecCCCCCcchhHHHhhhcCCCCcccc
Q 017781 112 SSVE----EVAST-G--PGIRFFQLYVYKDRNVVAQLVRRAERAGFK---AIALTVDTPRLGRREADIKNRFTLPPFLTL 181 (366)
Q Consensus 112 ~~~e----~i~~~-~--~~~~~~Qly~~~d~~~~~~~l~ra~~~G~~---ai~vtvd~p~~g~r~~d~~~~~~~p~~~~~ 181 (366)
...+ ++.+. . ..+.+.|+. ..+.+...+.+++++++|++ ++.+|+.||.. .+.++
T Consensus 76 ~g~~~~~~~~~~~~~~~~~p~~~~i~-g~~~~~~~~~a~~~~~~g~d~~~~iein~~~P~~-~g~~~------------- 140 (314)
T 2e6f_A 76 LGFDFYLKYASDLHDYSKKPLFLSIS-GLSVEENVAMVRRLAPVAQEKGVLLELNLSCPNV-PGKPQ------------- 140 (314)
T ss_dssp SCHHHHHHHHHHTCCTTTCCEEEEEC-CSSHHHHHHHHHHHHHHHHHHCCEEEEECCCCCS-TTCCC-------------
T ss_pred cCHHHHHHHHHHHhhcCCCcEEEEeC-CCCHHHHHHHHHHHHHhCCCcCceEEEEcCCCCC-CCchh-------------
Confidence 1122 23221 1 257888886 46778888899999999999 89999999864 11000
Q ss_pred ccccccccCCCccccchhhHHHhhhccCCCCCHHHHHHHHHhcCCCEEEEeccC--HHH--------HHcC-CcEEEEcC
Q 017781 182 KNFQGLDLGKMDEANDSGLAAYVAGQIDRSLSWKDVKWLQTITKLPILVKGVLT--AED--------VQAG-AAGIIVSN 250 (366)
Q Consensus 182 ~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~i~~lr~~~~~pv~vK~v~~--~~d--------~~aG-ad~I~vs~ 250 (366)
+ . .++...++.++++|+.+++||++|...+ .++ .++| +|+|+++|
T Consensus 141 ---------------------~-g--~~~~~~~~ii~~vr~~~~~Pv~vK~~~~~~~~~~~~~a~~~~~aG~~d~i~v~~ 196 (314)
T 2e6f_A 141 ---------------------V-A--YDFEAMRTYLQQVSLAYGLPFGVKMPPYFDIAHFDTAAAVLNEFPLVKFVTCVN 196 (314)
T ss_dssp ---------------------G-G--GSHHHHHHHHHHHHHHHCSCEEEEECCCCCHHHHHHHHHHHHTCTTEEEEEECC
T ss_pred ---------------------h-c--CCHHHHHHHHHHHHHhcCCCEEEEECCCCCHHHHHHHHHHHHhcCCceEEEEeC
Confidence 0 0 1333357789999999999999998753 333 7899 99999999
Q ss_pred CCcc--CCC-----------------CC----cchHHHHHHHHHHcCCCceEEEecCCCCHHHHHHHHHhCcCEEEecHH
Q 017781 251 HGAR--QLD-----------------YV----PATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFIGRP 307 (366)
Q Consensus 251 ~gg~--~~~-----------------~~----~~~~~~l~~i~~~~~~~i~vi~~GGI~~~~dv~kalalGAd~V~igr~ 307 (366)
+.++ ..+ .+ +..++.+.++++.+ +++|||++|||++++|+.++|++|||+|++||+
T Consensus 197 ~~~~~~~i~~~~~~~~~~~~~~~gG~sg~~~~p~~~~~i~~v~~~~-~~ipvi~~GGI~~~~da~~~l~~GAd~V~ig~~ 275 (314)
T 2e6f_A 197 SVGNGLVIDAESESVVIKPKQGFGGLGGKYILPTALANVNAFYRRC-PDKLVFGCGGVYSGEDAFLHILAGASMVQVGTA 275 (314)
T ss_dssp CEEEEECEETTTTEESCCGGGGEEEEESGGGHHHHHHHHHHHHHHC-TTSEEEEESSCCSHHHHHHHHHHTCSSEEECHH
T ss_pred CCCccccccCCCCCcccccCcCCCccCcccccHHHHHHHHHHHHhc-CCCCEEEECCCCCHHHHHHHHHcCCCEEEEchh
Confidence 7631 010 12 22467888888887 589999999999999999999999999999999
Q ss_pred HHHHhhhcCHHHHHHHHHHHHHHHHHHHHHcCCCChhhhcccc
Q 017781 308 VVYSLAAEGEKGVRRVLEMLREEFELAMALSGCRSLKEITRDH 350 (366)
Q Consensus 308 ~l~~l~~~G~~gv~~~~~~l~~el~~~m~~~G~~~l~el~~~~ 350 (366)
+++. |+ .+++.++++|+.+|...|+++++|+++..
T Consensus 276 ~l~~----~p----~~~~~i~~~l~~~~~~~g~~~i~~~~g~~ 310 (314)
T 2e6f_A 276 LQEE----GP----GIFTRLEDELLEIMARKGYRTLEEFRGRV 310 (314)
T ss_dssp HHHH----CT----THHHHHHHHHHHHHHHHTCCSSTTTTTCC
T ss_pred hHhc----Cc----HHHHHHHHHHHHHHHHcCCCCHHHHhchH
Confidence 9872 44 37788999999999999999999998764
|
| >1jub_A Dihydroorotate dehydrogenase A; homodimer, alpha-beta barrel, flavoprotein, mutant enzyme, oxidoreductase; HET: FMN; 1.40A {Lactococcus lactis} SCOP: c.1.4.1 PDB: 1ovd_A* 1jue_A* 1dor_A* 2bsl_A* 2bx7_A* 2dor_A* 1jqv_A* 1jrb_A* 1jrc_A* 1jqx_A* | Back alignment and structure |
|---|
Probab=99.92 E-value=3.8e-24 Score=205.24 Aligned_cols=237 Identities=19% Similarity=0.189 Sum_probs=178.4
Q ss_pred cceeEcCcccCCceEecccccccccCChhhHHHHHHHHHcCCceecCCCCC-C------C--------------------
Q 017781 61 MNTTVLGFKISMPIMIAPTAMQKMAHPEGEYATARAASAAGTIMTLSSWST-S------S-------------------- 113 (366)
Q Consensus 61 ~st~l~g~~l~~Pi~iApm~~~~l~~~~~e~~la~aa~~~G~~~~vs~~~~-~------~-------------------- 113 (366)
++++++|.++++||++||... +.+.+..+.+.+.|+++++....+ . .
T Consensus 2 l~~~i~g~~l~npv~~Aag~~------~~~~~~~~~~~~~G~g~i~~~~v~~~~~~gn~~pr~~~~~~~~in~~g~~~~g 75 (311)
T 1jub_A 2 LNTTFANAKFANPFMNASGVH------CMTIEDLEELKASQAGAYITKSSTLEKREGNPLPRYVDLELGSINSMGLPNLG 75 (311)
T ss_dssp CCEEETTEEESSSEEECTTSS------CSSHHHHHHHHHSSCSCCBCCCBCSSCBCCSCSCCEEEETTEEEECCCCCBSC
T ss_pred CceEECCEEcCCCcEECCCCC------CCCHHHHHHHHHCCCCEEEeCccCCcccCCCCCCcEEecccceeecCCCCCcc
Confidence 689999999999999997321 235677888999999988743321 1 0
Q ss_pred HH----HHhc---cC--CCceEEEeeecCCHHHHHHHHHHHHHcCCC-EEEEecCCCCCcchhHHHhhhcCCCCcccccc
Q 017781 114 VE----EVAS---TG--PGIRFFQLYVYKDRNVVAQLVRRAERAGFK-AIALTVDTPRLGRREADIKNRFTLPPFLTLKN 183 (366)
Q Consensus 114 ~e----~i~~---~~--~~~~~~Qly~~~d~~~~~~~l~ra~~~G~~-ai~vtvd~p~~g~r~~d~~~~~~~p~~~~~~~ 183 (366)
.+ ++.. .. ..|.+.|+. ..+.+...+.+++++++|++ ++.+++.||.. .+.+
T Consensus 76 ~~~~~~~~~~~~~~~~~~~p~~~~i~-g~~~~~~~~~a~~~~~~g~d~~iein~~~P~~-~g~~---------------- 137 (311)
T 1jub_A 76 FDYYLDYVLKNQKENAQEGPIFFSIA-GMSAAENIAMLKKIQESDFSGITELNLSCPNV-PGEP---------------- 137 (311)
T ss_dssp HHHHHHHHHHHHHHTCSSSCCEEEEC-CSSHHHHHHHHHHHHHSCCCSEEEEESCCCCS-SSCC----------------
T ss_pred HHHHHHHHHHHHHhcCCCCCEEEEcC-CCCHHHHHHHHHHHHhcCCCeEEEEeccCCCC-CCcc----------------
Confidence 22 2221 12 356788886 46778888999999999999 99999999864 1100
Q ss_pred ccccccCCCccccchhhHHHhhhccCCCCCHHHHHHHHHhcCCCEEEEeccC--HHH--------HHcCCcEEEEcCCCc
Q 017781 184 FQGLDLGKMDEANDSGLAAYVAGQIDRSLSWKDVKWLQTITKLPILVKGVLT--AED--------VQAGAAGIIVSNHGA 253 (366)
Q Consensus 184 ~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~i~~lr~~~~~pv~vK~v~~--~~d--------~~aGad~I~vs~~gg 253 (366)
.+ . .++...++.++++|+.+++||++|...+ .++ .++|+|+|+++|+.+
T Consensus 138 ------------------~~-g--~~~e~~~~iv~~vr~~~~~Pv~vKi~~~~~~~~~~~~a~~~~~~G~d~i~v~~~~~ 196 (311)
T 1jub_A 138 ------------------QL-A--YDFEATEKLLKEVFTFFTKPLGVKLPPYFDLVHFDIMAEILNQFPLTYVNSVNSIG 196 (311)
T ss_dssp ------------------CG-G--GCHHHHHHHHHHHTTTCCSCEEEEECCCCSHHHHHHHHHHHTTSCCCEEEECCCEE
T ss_pred ------------------cc-c--CCHHHHHHHHHHHHHhcCCCEEEEECCCCCHHHHHHHHHHHHHcCCcEEEecCCCC
Confidence 00 0 1333457889999999999999998753 222 788999999999752
Q ss_pred --cCCC-----------------CCc----chHHHHHHHHHHcCCCceEEEecCCCCHHHHHHHHHhCcCEEEecHHHHH
Q 017781 254 --RQLD-----------------YVP----ATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFIGRPVVY 310 (366)
Q Consensus 254 --~~~~-----------------~~~----~~~~~l~~i~~~~~~~i~vi~~GGI~~~~dv~kalalGAd~V~igr~~l~ 310 (366)
.+.+ .++ ..++.+.++++.+++++|||++|||++++|+.++|++|||+|++||++++
T Consensus 197 ~g~~i~~~~~~~~~~~~~~~gG~sg~~~~~~~~~~i~~v~~~~~~~ipvi~~GGI~~~~da~~~l~~GAd~V~vg~~~l~ 276 (311)
T 1jub_A 197 NGLFIDPEAESVVIKPKDGFGGIGGAYIKPTALANVRAFYTRLKPEIQIIGTGGIETGQDAFEHLLCGATMLQIGTALHK 276 (311)
T ss_dssp EEECEETTTTEESCSGGGGEEEEESGGGHHHHHHHHHHHHTTSCTTSEEEEESSCCSHHHHHHHHHHTCSEEEECHHHHH
T ss_pred cCceeccCCCCcccccCCCCCccccccccHHHHHHHHHHHHhcCCCCCEEEECCCCCHHHHHHHHHcCCCEEEEchHHHh
Confidence 1111 022 24677888888776689999999999999999999999999999999997
Q ss_pred HhhhcCHHHHHHHHHHHHHHHHHHHHHcCCCChhhhcccc
Q 017781 311 SLAAEGEKGVRRVLEMLREEFELAMALSGCRSLKEITRDH 350 (366)
Q Consensus 311 ~l~~~G~~gv~~~~~~l~~el~~~m~~~G~~~l~el~~~~ 350 (366)
. |+ .+++.++++|+.+|...|+++++|+++..
T Consensus 277 ~----~p----~~~~~i~~~l~~~l~~~g~~si~e~~g~~ 308 (311)
T 1jub_A 277 E----GP----AIFDRIIKELEEIMNQKGYQSIADFHGKL 308 (311)
T ss_dssp H----CT----HHHHHHHHHHHHHHHHHTCCSGGGTTTCC
T ss_pred c----Cc----HHHHHHHHHHHHHHHHcCCCCHHHHhChh
Confidence 2 44 37788999999999999999999998753
|
| >1ea0_A Glutamate synthase [NADPH] large chain; oxidoreductase, iron sulphur flavoprotein; HET: OMT FMN AKG; 3.0A {Azospirillum brasilense} SCOP: b.80.4.1 c.1.4.1 d.153.1.1 PDB: 2vdc_A* | Back alignment and structure |
|---|
Probab=99.92 E-value=2e-24 Score=237.26 Aligned_cols=306 Identities=18% Similarity=0.175 Sum_probs=206.2
Q ss_pred ChHHHHHHHHHhCCccchhhhcCCccchhhHHHhHhcccceeeeccccC--CCCCCccceeEcCcccCCceEeccccccc
Q 017781 6 NVMEYEAIAKEKLPKMVFDYYASGAEDQWTLQENRNAFSRILFRPRILI--DVSKIDMNTTVLGFKISMPIMIAPTAMQK 83 (366)
Q Consensus 6 ~~~d~~~~A~~~l~~~~~~y~~~ga~~~~t~~~N~~~f~~i~l~pr~l~--~~~~vd~st~l~g~~l~~Pi~iApm~~~~ 83 (366)
++..+++.|+..- ...|.-+. +.+-.+....|+++.+.+..+. +++++|+++ .+..||+++||+++.
T Consensus 794 ~i~~l~~~~~~g~-~~~~~~~~-----~~~~~~~~~~~~dl~~~~~~l~~i~~~ev~~~~-----~I~~Pf~isaMS~Ga 862 (1479)
T 1ea0_A 794 VIHTLQQAVTNDS-YTTFKKYS-----EQVNKRPPMQLRDLLELRSTKAPVPVDEVESIT-----AIRKRFITPGMSMGA 862 (1479)
T ss_dssp HHHHHHHHHHHTC-HHHHHHHH-----HHHHTSCCCSGGGGEEECCSSCCCCGGGSCCHH-----HHHTTEEEEECCBTT
T ss_pred HHHHHHHHHHhCC-HHHHHHHH-----hhhccCCCCchhhhhhccCCCCCCCcccccccc-----cccCCeEecCccccc
Confidence 3566777777662 22332221 1111133457999999887775 456788776 678999999999875
Q ss_pred ccCChhhHHHHHHHHHcCCceecCCCCCCCHHHHhccC----CCceEEEeeecCCHHHHHHHHHHHHHcCCCEEEEecCC
Q 017781 84 MAHPEGEYATARAASAAGTIMTLSSWSTSSVEEVASTG----PGIRFFQLYVYKDRNVVAQLVRRAERAGFKAIALTVDT 159 (366)
Q Consensus 84 l~~~~~e~~la~aa~~~G~~~~vs~~~~~~~e~i~~~~----~~~~~~Qly~~~d~~~~~~~l~ra~~~G~~ai~vtvd~ 159 (366)
+ .++.+.+||.+|+++|+.+.+++.. .+.++..... ....+.|+.. .........+ ..++++-|.+..
T Consensus 863 l-S~ea~~aLA~Aa~~aGg~~~tGeGg-~~pe~~~~~~~g~~~~~~IrQ~as-g~FGVn~~~l-----~~a~~ieIKigQ 934 (1479)
T 1ea0_A 863 L-SPEAHGTLNVAMNRIGAKSDSGEGG-EDPARFRPDKNGDNWNSAIKQVAS-GRFGVTAEYL-----NQCRELEIKVAQ 934 (1479)
T ss_dssp B-CHHHHHHHHHHHHHTTCEEECCTTC-CCGGGSSBCTTSCBCCCSEEEECS-SCTTCCHHHH-----TSCSEEEEECCC
T ss_pred c-CHHHHHHHHHHHHHcCCeeEcCCCc-cCHHHhhhccccchhhhhhhhhcC-CCCCcChHHc-----cccchHHHHHhc
Confidence 4 4678899999999999999998764 3444442110 1234677753 2222222222 356777777642
Q ss_pred CC---C-----cchhHHHhhhc-CCCCccccccccccccCCCccccchhhHHHhhhccCCCC-CH----HHHHHHHHhc-
Q 017781 160 PR---L-----GRREADIKNRF-TLPPFLTLKNFQGLDLGKMDEANDSGLAAYVAGQIDRSL-SW----KDVKWLQTIT- 224 (366)
Q Consensus 160 p~---~-----g~r~~d~~~~~-~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~-~~----~~i~~lr~~~- 224 (366)
.. . +.+..+..... .++.++ ..+++..++++ ++ +.|+++|+.+
T Consensus 935 GAKpG~GG~Lp~~kv~~~IA~~R~~~~Gv----------------------~lisP~~~~d~~s~edl~~~I~~Lk~~~~ 992 (1479)
T 1ea0_A 935 GAKPGEGGQLPGFKVTEMIARLRHSTPGV----------------------MLISPPPHHDIYSIEDLAQLIYDLKQINP 992 (1479)
T ss_dssp TTSTTTCCEECGGGCCHHHHHHHTCCTTC----------------------CEECCSSCTTCSSHHHHHHHHHHHHHHCT
T ss_pred cCCCCcCCCCCHHHHHHHHHHHcCCCCCC----------------------CccCCCCCcCcCCHHHHHHHHHHHHHhCC
Confidence 11 1 11111100000 111111 11122223332 34 4589999998
Q ss_pred CCCEEEEeccC---HHH----HHcCCcEEEEcCCCccC--------CCCCcchHHHHHHHHHHc-----CCCceEEEecC
Q 017781 225 KLPILVKGVLT---AED----VQAGAAGIIVSNHGARQ--------LDYVPATIMALEEVVKAT-----QGRIPVFLDGG 284 (366)
Q Consensus 225 ~~pv~vK~v~~---~~d----~~aGad~I~vs~~gg~~--------~~~~~~~~~~l~~i~~~~-----~~~i~vi~~GG 284 (366)
++||++|++.+ .++ .++|||+|+|+||+|.. .+++.|+...|+++.+++ ++++|||++||
T Consensus 993 ~~PV~VKlv~~~gi~~~A~~a~~AGAD~IvVsG~eGGTgasp~~~~~~~G~Pt~~aL~ev~~al~~~glr~~VpVIAdGG 1072 (1479)
T 1ea0_A 993 DAKVTVKLVSRSGIGTIAAGVAKANADIILISGNSGGTGASPQTSIKFAGLPWEMGLSEVHQVLTLNRLRHRVRLRTDGG 1072 (1479)
T ss_dssp TCEEEEEEECCTTHHHHHHHHHHTTCSEEEEECTTCCCSSEETTHHHHSCCCHHHHHHHHHHHHHTTTCTTTSEEEEESS
T ss_pred CCCEEEEEcCCCChHHHHHHHHHcCCcEEEEcCCCCCCCCCchhhhcCCchhHHHHHHHHHHHHHHcCCCCCceEEEECC
Confidence 88999999863 222 89999999999995432 246778889999998875 35799999999
Q ss_pred CCCHHHHHHHHHhCcCEEEecHHHHHHhhh---------------------------cCHHHHHHHHHHHHHHHHHHHHH
Q 017781 285 VRRGTDVFKALALGASGIFIGRPVVYSLAA---------------------------EGEKGVRRVLEMLREEFELAMAL 337 (366)
Q Consensus 285 I~~~~dv~kalalGAd~V~igr~~l~~l~~---------------------------~G~~gv~~~~~~l~~el~~~m~~ 337 (366)
|+++.|++|||++||++|++||+||++++| +|+++|.++++.+.+||+.+|..
T Consensus 1073 IrtG~DVakALaLGAdaV~iGTafL~a~gc~~~r~Ch~~~CP~Gvatqdp~l~~~~~gg~e~V~n~l~~l~~ELr~~Ma~ 1152 (1479)
T 1ea0_A 1073 LKTGRDIVIAAMLGAEEFGIGTASLIAMGCIMVRQCHSNTCPVGVCVQDDKLRQKFVGTPEKVVNLFTFLAEEVREILAG 1152 (1479)
T ss_dssp CCSHHHHHHHHHTTCSEEECCHHHHHHHTCCCCCCTTTTCCTTSSSCCCTTGGGSCCCCHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHcCCCeeeEcHHHHHHHHHHHHhhccCCCCCceeEEeCHHHHhhcCCchHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999998754 36899999999999999999999
Q ss_pred cCCCChhhhcc-ccee
Q 017781 338 SGCRSLKEITR-DHIV 352 (366)
Q Consensus 338 ~G~~~l~el~~-~~l~ 352 (366)
+|+++++||.+ ..+.
T Consensus 1153 lG~~si~eL~g~~~ll 1168 (1479)
T 1ea0_A 1153 LGFRSLNEVIGRTDLL 1168 (1479)
T ss_dssp HTCSCSGGGTTCGGGE
T ss_pred hCCCCHHHHhCchhee
Confidence 99999999943 3443
|
| >1gte_A Dihydropyrimidine dehydrogenase; electron transfer, flavin, iron-sulfur clusters, pyrimidine catabolism, 5-fluorouracil degradation, oxidoreductase; HET: FMN FAD; 1.65A {Sus scrofa} SCOP: a.1.2.2 c.1.4.1 c.3.1.1 c.4.1.1 d.58.1.5 PDB: 1gt8_A* 1gth_A* 1h7w_A* 1h7x_A* | Back alignment and structure |
|---|
Probab=99.92 E-value=6.1e-24 Score=233.20 Aligned_cols=252 Identities=21% Similarity=0.278 Sum_probs=190.8
Q ss_pred eeccccCCCCCCccceeEcCcccCCceEecccccccccCChhhHHHHHHHHHcCCceec-CCCC-------CC-------
Q 017781 48 FRPRILIDVSKIDMNTTVLGFKISMPIMIAPTAMQKMAHPEGEYATARAASAAGTIMTL-SSWS-------TS------- 112 (366)
Q Consensus 48 l~pr~l~~~~~vd~st~l~g~~l~~Pi~iApm~~~~l~~~~~e~~la~aa~~~G~~~~v-s~~~-------~~------- 112 (366)
-.|.....++++|++++++|.++++||++|||++. .+.++++.+.+.|.++++ .+.+ +.
T Consensus 520 ~~p~~~~ev~~v~ls~~~~G~~~~nPv~lAa~~~~------~~~~~~~~~~~~g~G~vv~~t~~~~~~~~gn~~pr~~~~ 593 (1025)
T 1gte_A 520 ELPLFYTPVDLVDISVEMAGLKFINPFGLASAAPT------TSSSMIRRAFEAGWGFALTKTFSLDKDIVTNVSPRIVRG 593 (1025)
T ss_dssp CBCCCCCGGGGCCCCEEETTEEESSSEEECSSGGG------SSHHHHHHHHHHTCSEEECCCBCCGGGCCCCCSSCEEEC
T ss_pred CccccccccccccceeeeccccccCcccccCCCCC------CCHHHHHHHHHCCcCeEEeceecccccccCCCCccEEec
Confidence 33443446789999999999999999999999764 367788889999998886 2111 10
Q ss_pred -----------------------C-------HHHHhccCC-CceEEEeeecCCHHHHHHHHHHHHHcCCCEEEEecCCCC
Q 017781 113 -----------------------S-------VEEVASTGP-GIRFFQLYVYKDRNVVAQLVRRAERAGFKAIALTVDTPR 161 (366)
Q Consensus 113 -----------------------~-------~e~i~~~~~-~~~~~Qly~~~d~~~~~~~l~ra~~~G~~ai~vtvd~p~ 161 (366)
. ++++.+..+ .+.++|++...+.+...+.+++++++|+++|.||++||.
T Consensus 594 ~~~g~~~~~~~~~~~n~e~~~~~~~~~~~~~i~~~~~~~~~~~~i~~i~~g~~~~~~~~~a~~~~~~g~d~iein~~~P~ 673 (1025)
T 1gte_A 594 TTSGPMYGPGQSSFLNIELISEKTAAYWCQSVTELKADFPDNIVIASIMCSYNKNDWMELSRKAEASGADALELNLSCPH 673 (1025)
T ss_dssp CTTCSCCSSCCSCEEECCCSCSSCHHHHHHHHHHHHHHCTTSEEEEEECCCSCHHHHHHHHHHHHHTTCSEEEEECCCBC
T ss_pred cccccccCCchhheeeeccccchhHHHHHHHHHHHHhcCCCCCeEEEecCCCCHHHHHHHHHHHHhcCCCEEEEECCCCC
Confidence 0 123344344 678999987788999999999999999999999999986
Q ss_pred CcchhHHHhhhcCCCCccccccccccccCCCccccchhhHHHhhhccCCCCCHHHHHHHHHhcCCCEEEEeccCHHH---
Q 017781 162 LGRREADIKNRFTLPPFLTLKNFQGLDLGKMDEANDSGLAAYVAGQIDRSLSWKDVKWLQTITKLPILVKGVLTAED--- 238 (366)
Q Consensus 162 ~g~r~~d~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~i~~lr~~~~~pv~vK~v~~~~d--- 238 (366)
. .+.++ + +..++ .++.+.++.++++|+.+++||++|...+.++
T Consensus 674 ~-~~~~~----~---------------------------G~~~~--~~~~~~~~iv~~v~~~~~~Pv~vK~~~~~~~~~~ 719 (1025)
T 1gte_A 674 G-MGERG----M---------------------------GLACG--QDPELVRNICRWVRQAVQIPFFAKLTPNVTDIVS 719 (1025)
T ss_dssp C-CC------------------------------------SBGG--GCHHHHHHHHHHHHHHCSSCEEEEECSCSSCHHH
T ss_pred C-CCCCC----c---------------------------ccccc--cCHHHHHHHHHHHHHhhCCceEEEeCCChHHHHH
Confidence 3 11100 0 00011 2455678899999999999999999865432
Q ss_pred -----HHcCCcEEEEcCC--------------------CccCCC--CCcch----HHHHHHHHHHcCCCceEEEecCCCC
Q 017781 239 -----VQAGAAGIIVSNH--------------------GARQLD--YVPAT----IMALEEVVKATQGRIPVFLDGGVRR 287 (366)
Q Consensus 239 -----~~aGad~I~vs~~--------------------gg~~~~--~~~~~----~~~l~~i~~~~~~~i~vi~~GGI~~ 287 (366)
.++|+|+|+++|+ |.+... .+++. ++.+.++++.+ +++|||++|||++
T Consensus 720 ~a~~~~~~G~d~i~v~Nt~~~~~~~~~~~~~~~~~~~~gr~~~gg~sg~~~~~~~~~~v~~v~~~~-~~ipvi~~GGI~s 798 (1025)
T 1gte_A 720 IARAAKEGGADGVTATNTVSGLMGLKADGTPWPAVGAGKRTTYGGVSGTAIRPIALRAVTTIARAL-PGFPILATGGIDS 798 (1025)
T ss_dssp HHHHHHHHTCSEEEECCCEEECCCBCTTSCBSSCBTTTTBBCCEEEESGGGHHHHHHHHHHHHHHS-TTCCEEEESSCCS
T ss_pred HHHHHHHcCCCEEEEeccccccccccccccccccccccccccCCCCCcccchhHHHHHHHHHHHHc-CCCCEEEecCcCC
Confidence 7999999999874 221111 13333 46788888887 4699999999999
Q ss_pred HHHHHHHHHhCcCEEEecHHHHHHhhhcCHHHHHHHHHHHHHHHHHHHHHcCCCChhhhcc
Q 017781 288 GTDVFKALALGASGIFIGRPVVYSLAAEGEKGVRRVLEMLREEFELAMALSGCRSLKEITR 348 (366)
Q Consensus 288 ~~dv~kalalGAd~V~igr~~l~~l~~~G~~gv~~~~~~l~~el~~~m~~~G~~~l~el~~ 348 (366)
++|+.++|++|||+|+|||++++. +. .+++.+.+||+.+|...|+.+++++.+
T Consensus 799 ~~da~~~l~~Ga~~v~vg~~~l~~----~~----~~~~~~~~~l~~~l~~~G~~~i~~l~g 851 (1025)
T 1gte_A 799 AESGLQFLHSGASVLQVCSAVQNQ----DF----TVIQDYCTGLKALLYLKSIEELQGWDG 851 (1025)
T ss_dssp HHHHHHHHHTTCSEEEESHHHHTS----CT----THHHHHHHHHHHHHHHTTCGGGTTSBT
T ss_pred HHHHHHHHHcCCCEEEEeeccccC----Cc----cHHHHHHHHHHHHHHHcCCCCHHHHhC
Confidence 999999999999999999999862 33 467789999999999999999999987
|
| >3ffs_A Inosine-5-monophosphate dehydrogenase; beta-alpha barrel, TIM fold, oxidoreductase; 3.19A {Cryptosporidium parvum} | Back alignment and structure |
|---|
Probab=99.92 E-value=1.3e-23 Score=207.15 Aligned_cols=252 Identities=21% Similarity=0.279 Sum_probs=169.7
Q ss_pred cccceeeecccc-CCCCCCccceeEc-CcccCCceEecccccccccCChhhHHHHHHHHHcCCceecCCCCCCCHHHHhc
Q 017781 42 AFSRILFRPRIL-IDVSKIDMNTTVL-GFKISMPIMIAPTAMQKMAHPEGEYATARAASAAGTIMTLSSWSTSSVEEVAS 119 (366)
Q Consensus 42 ~f~~i~l~pr~l-~~~~~vd~st~l~-g~~l~~Pi~iApm~~~~l~~~~~e~~la~aa~~~G~~~~vs~~~~~~~e~i~~ 119 (366)
.|||+.|+|..- ...+++|++|.|. ...+..||+.|||++.+ +..||.+.++.|...+++. +.++|++++
T Consensus 11 t~ddvll~P~~~~~~~~~v~l~t~lt~~l~l~~PIi~a~M~~Vs------~~~lA~Ava~aGGlGvi~~--~~~~e~~~~ 82 (400)
T 3ffs_A 11 TFEDILLVPNYSEVLPREVSLETKLTKNVSLKIPLISSAMDTVT------EHLMAVGMARLGGIGIIHK--NMDMESQVN 82 (400)
T ss_dssp CGGGEEECCCCBCSCGGGCCCCEESSSSCEESSSEEECSCTTTC------SSHHHHHHHTTTCEEEECS--SSCHHHHHH
T ss_pred CceeEEEecCCCccCHHHccCccchhcccCCCCCEEeCCCCCcC------cHHHHHHHHHCCCEEEeCC--CCCHHHHHH
Confidence 699999999754 3557899999986 57889999999997543 5589999999999999974 566765542
Q ss_pred c-------CC----CceE--EEeeec-CCHHHH------------------------------HHHHHHHHHcCCCEEEE
Q 017781 120 T-------GP----GIRF--FQLYVY-KDRNVV------------------------------AQLVRRAERAGFKAIAL 155 (366)
Q Consensus 120 ~-------~~----~~~~--~Qly~~-~d~~~~------------------------------~~~l~ra~~~G~~ai~v 155 (366)
. .. .|+- .+|++. .+.+.. .+.++.+.++|++.+++
T Consensus 83 ~i~~vk~~~~g~~~~P~~~~~nL~~~~~~~~~~~~~~~~~~~p~~~~d~~g~l~v~~~v~~~~~e~~~~lveaGvdvIvl 162 (400)
T 3ffs_A 83 EVLKVKNWISNLEKNESTPDQNLDKESTDGKDTKSNNNIDAYSNENLDNKGRLRVGAAIGVNEIERAKLLVEAGVDVIVL 162 (400)
T ss_dssp HHHHHHCCC-------------------------------CCTTCCBCTTSSBCCEEEECCC-CHHHHHHHHHTCSEEEE
T ss_pred HHHHHHhhccCcccCCCCccccccCCCCCHHHHHHHHHhhhCcchhhccccceeEEeecCCCHHHHHHHHHHcCCCEEEE
Confidence 1 11 1221 233210 000000 11111222222222211
Q ss_pred ecCCCCCcchhHHHhhhcCCCCccccccccccccCCCccccchhhHHHhhhccCCCCCHHHHHHHHHhcCCCEEEEeccC
Q 017781 156 TVDTPRLGRREADIKNRFTLPPFLTLKNFQGLDLGKMDEANDSGLAAYVAGQIDRSLSWKDVKWLQTITKLPILVKGVLT 235 (366)
Q Consensus 156 tvd~p~~g~r~~d~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~i~~lr~~~~~pv~vK~v~~ 235 (366)
+. ..+++...++.|+++|+.+++||+++.+.+
T Consensus 163 dt------------------------------------------------a~G~~~~~~e~I~~ik~~~~i~Vi~g~V~t 194 (400)
T 3ffs_A 163 DS------------------------------------------------AHGHSLNIIRTLKEIKSKMNIDVIVGNVVT 194 (400)
T ss_dssp CC------------------------------------------------SCCSBHHHHHHHHHHHTTCCCEEEEEEECS
T ss_pred eC------------------------------------------------CCCCcccHHHHHHHHHhcCCCeEEEeecCC
Confidence 10 001222235679999998899999999999
Q ss_pred HHH----HHcCCcEEEEcCCCcc-----C-CCCCcchHHHHHHHHHHcCC-CceEEEecCCCCHHHHHHHHHhCcCEEEe
Q 017781 236 AED----VQAGAAGIIVSNHGAR-----Q-LDYVPATIMALEEVVKATQG-RIPVFLDGGVRRGTDVFKALALGASGIFI 304 (366)
Q Consensus 236 ~~d----~~aGad~I~vs~~gg~-----~-~~~~~~~~~~l~~i~~~~~~-~i~vi~~GGI~~~~dv~kalalGAd~V~i 304 (366)
.++ .++|||+|++++.+|. . ...+.+.+.++.++++++.. ++|||++|||+++.|+.|+|++|||+|++
T Consensus 195 ~e~A~~a~~aGAD~I~vG~g~Gs~~~tr~~~g~g~p~~~al~~v~~~~~~~~IPVIA~GGI~~~~di~kalalGAd~V~v 274 (400)
T 3ffs_A 195 EEATKELIENGADGIKVGIGPGSICTTRIVAGVGVPQITAIEKCSSVASKFGIPIIADGGIRYSGDIGKALAVGASSVMI 274 (400)
T ss_dssp HHHHHHHHHTTCSEEEECC---------CCSCBCCCHHHHHHHHHHHHTTTTCCEEEESCCCSHHHHHHHHTTTCSEEEE
T ss_pred HHHHHHHHHcCCCEEEEeCCCCcCcccccccccchhHHHHHHHHHHHHHhcCCCEEecCCCCCHHHHHHHHHcCCCEEEE
Confidence 887 9999999999543332 1 13456889999999887542 79999999999999999999999999999
Q ss_pred cHHHH--------------------HHhhhc--------------C-------HHH----------HHHHHHHHHHHHHH
Q 017781 305 GRPVV--------------------YSLAAE--------------G-------EKG----------VRRVLEMLREEFEL 333 (366)
Q Consensus 305 gr~~l--------------------~~l~~~--------------G-------~~g----------v~~~~~~l~~el~~ 333 (366)
|++|+ |+++.. + ++| +++++..|...|+.
T Consensus 275 Gt~f~~t~Es~~~~~~~~g~~~k~y~Gm~s~~am~~~~~~ry~~~~~~~~~~~~eG~~~~v~~~g~~~~~~~~~~~glr~ 354 (400)
T 3ffs_A 275 GSILAGTEESPGEKELIGDTVYKYYRGMGSVGAMKSGSGDRYFQEKRPENKMVPEGIEGRVKYKGEMEGVVYQLVGGLRS 354 (400)
T ss_dssp CGGGTTBTTSSCCEEESSSSEEEC-----------------------------------CEECCBCHHHHHHHHHHHHHH
T ss_pred ChHHhcCCCCCchhhhcCCeeeeeecCcchHHHHhccccchhhcccccccccCCCCcEEecCCCCCHHHHHHHHHHHHHH
Confidence 99984 333210 0 222 77889999999999
Q ss_pred HHHHcCCCChhhhccc
Q 017781 334 AMALSGCRSLKEITRD 349 (366)
Q Consensus 334 ~m~~~G~~~l~el~~~ 349 (366)
.|.++|+.+|+||+..
T Consensus 355 ~~~y~G~~~i~el~~~ 370 (400)
T 3ffs_A 355 CMGYLGSASIEELWKK 370 (400)
T ss_dssp HHHHTTCSSHHHHHHH
T ss_pred hhhhcCcccHHHHHhC
Confidence 9999999999999754
|
| >4fo4_A Inosine 5'-monophosphate dehydrogenase; structural genomics, IMPDH, IMP, mycophenolic acid, MOA; HET: IMP MOA; 2.03A {Vibrio cholerae o1 biovar el tor} PDB: 4ff0_A* 4hlv_A* 4fez_A | Back alignment and structure |
|---|
Probab=99.92 E-value=7.6e-24 Score=207.01 Aligned_cols=252 Identities=19% Similarity=0.247 Sum_probs=183.5
Q ss_pred hcccceeeecccc-CCCCCCccceeEc-CcccCCceEecccccccccCChhhHHHHHHHHHcCCceecCCCCCCCHHHHh
Q 017781 41 NAFSRILFRPRIL-IDVSKIDMNTTVL-GFKISMPIMIAPTAMQKMAHPEGEYATARAASAAGTIMTLSSWSTSSVEEVA 118 (366)
Q Consensus 41 ~~f~~i~l~pr~l-~~~~~vd~st~l~-g~~l~~Pi~iApm~~~~l~~~~~e~~la~aa~~~G~~~~vs~~~~~~~e~i~ 118 (366)
..||++.|+|..- .+.+++|++|+|. ...+..||+.|||+..+ +..+|.+.++.|...++.. +.+.+++.
T Consensus 14 ~~fddv~lvp~~~~~~~~~vdl~t~lt~~~~l~~Pii~apM~~vs------~~~lA~avA~aGGlg~i~~--~~s~e~~~ 85 (366)
T 4fo4_A 14 LTFDDVLLVPAHSTVLPNTADLRTRLTKNIALNIPMVSASMDTVT------EARLAIALAQEGGIGFIHK--NMSIEQQA 85 (366)
T ss_dssp CCGGGEEECCCCCCCCGGGCBCCEEEETTEEESSSEEECCCTTTC------SHHHHHHHHHTTCEEEECS--SSCHHHHH
T ss_pred CCcceEEEECCCCCCChhhcccceecccccccCCCEEeCCCCCCC------hHHHHHHHHHcCCceEeec--CCCHHHHH
Confidence 3699999999733 2456899999997 68899999999997643 6789999888888777753 35565543
Q ss_pred cc----CC-CceEEEeeecCCHHHHHHHHHHHHHcCCCEEEEecCCCCCcchhHHHhhhcCCCCccccccccccccCCCc
Q 017781 119 ST----GP-GIRFFQLYVYKDRNVVAQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLTLKNFQGLDLGKMD 193 (366)
Q Consensus 119 ~~----~~-~~~~~Qly~~~d~~~~~~~l~ra~~~G~~ai~vtvd~p~~g~r~~d~~~~~~~p~~~~~~~~~~~~~~~~~ 193 (366)
+. .. ++..+.+-...+. ...+.++.+.++|++.++|+. ..
T Consensus 86 ~~i~~vk~~~~l~vga~vg~~~-~~~~~~~~lieaGvd~I~idt--a~-------------------------------- 130 (366)
T 4fo4_A 86 AQVHQVKISGGLRVGAAVGAAP-GNEERVKALVEAGVDVLLIDS--SH-------------------------------- 130 (366)
T ss_dssp HHHHHHHTTTSCCCEEECCSCT-TCHHHHHHHHHTTCSEEEEEC--SC--------------------------------
T ss_pred HHHHHHHhcCceeEEEEeccCh-hHHHHHHHHHhCCCCEEEEeC--CC--------------------------------
Confidence 21 11 2222333222221 234567788889999887742 10
Q ss_pred cccchhhHHHhhhccCCCCCHHHHHHHHHhc-CCCEEEEeccCHHH----HHcCCcEEEEcCCCccC------CCCCcch
Q 017781 194 EANDSGLAAYVAGQIDRSLSWKDVKWLQTIT-KLPILVKGVLTAED----VQAGAAGIIVSNHGARQ------LDYVPAT 262 (366)
Q Consensus 194 ~~~~~~~~~~~~~~~d~~~~~~~i~~lr~~~-~~pv~vK~v~~~~d----~~aGad~I~vs~~gg~~------~~~~~~~ 262 (366)
.++....+.|+++|+.+ ++||+++.+.+.++ .++|||+|+++...|.. ..++.+.
T Consensus 131 --------------G~~~~~~~~I~~ik~~~p~v~Vi~G~v~t~e~A~~a~~aGAD~I~vG~gpGs~~~tr~~~g~g~p~ 196 (366)
T 4fo4_A 131 --------------GHSEGVLQRIRETRAAYPHLEIIGGNVATAEGARALIEAGVSAVKVGIGPGSICTTRIVTGVGVPQ 196 (366)
T ss_dssp --------------TTSHHHHHHHHHHHHHCTTCEEEEEEECSHHHHHHHHHHTCSEEEECSSCSTTBCHHHHHCCCCCH
T ss_pred --------------CCCHHHHHHHHHHHHhcCCCceEeeeeCCHHHHHHHHHcCCCEEEEecCCCCCCCcccccCcccch
Confidence 01112345689999988 78999988999887 89999999995333321 1356788
Q ss_pred HHHHHHHHHHcC-CCceEEEecCCCCHHHHHHHHHhCcCEEEecHHHHHH--------------------hhh-----c-
Q 017781 263 IMALEEVVKATQ-GRIPVFLDGGVRRGTDVFKALALGASGIFIGRPVVYS--------------------LAA-----E- 315 (366)
Q Consensus 263 ~~~l~~i~~~~~-~~i~vi~~GGI~~~~dv~kalalGAd~V~igr~~l~~--------------------l~~-----~- 315 (366)
++.|.++++++. .++|||++|||+++.|+.|+|++|||+|++|++|+.. ++. .
T Consensus 197 ~~~l~~v~~~~~~~~iPVIA~GGI~~~~di~kala~GAd~V~vGs~f~~t~Esp~~~~~~~g~~~k~y~gm~s~~am~~~ 276 (366)
T 4fo4_A 197 ITAIADAAGVANEYGIPVIADGGIRFSGDISKAIAAGASCVMVGSMFAGTEEAPGEVILYQGRSYKAYRGMGSLGAMSKG 276 (366)
T ss_dssp HHHHHHHHHHHGGGTCCEEEESCCCSHHHHHHHHHTTCSEEEESTTTTTBTTSSSCCEEETTEEEEEEECTTSHHHHCC-
T ss_pred HHHHHHHHHHHhhcCCeEEEeCCCCCHHHHHHHHHcCCCEEEEChHhhcCCCCCchhhhhCCceeEEeeccccHHHHhcc
Confidence 899999887542 2799999999999999999999999999999998532 110 0
Q ss_pred --------C-------HH----------HHHHHHHHHHHHHHHHHHHcCCCChhhhccc
Q 017781 316 --------G-------EK----------GVRRVLEMLREEFELAMALSGCRSLKEITRD 349 (366)
Q Consensus 316 --------G-------~~----------gv~~~~~~l~~el~~~m~~~G~~~l~el~~~ 349 (366)
+ ++ .+++++..|...|+..|.++|+.+|+||+..
T Consensus 277 ~~~ry~~~~~~~~~~~~eg~~~~v~~~g~~~~~~~~~~~glr~~~~y~g~~~~~~~~~~ 335 (366)
T 4fo4_A 277 SSDRYFQTDNAADKLVPEGIEGRIAYKGHLKEIIHQQMGGLRSCMGLTGSATVEDLRTK 335 (366)
T ss_dssp --------------CCCSBCEEEEECCBCHHHHHHHHHHHHHHHHHHHTCSBHHHHHHH
T ss_pred cccchhccccccccccCCCcEEecCCCCCHHHHHHHHHHHHHHhhhccCcccHHHHHhC
Confidence 0 01 2778999999999999999999999999754
|
| >4ef8_A Dihydroorotate dehydrogenase; phenyl isothiocyanate, PYRD, oxidoreductase, oxidoreductase-oxidor inhibitor complex; HET: FMN; 1.56A {Leishmania major} PDB: 3gye_A* 3gz3_A* 4ef9_A* 3tro_A* 3tjx_A* | Back alignment and structure |
|---|
Probab=99.91 E-value=1.7e-23 Score=203.71 Aligned_cols=247 Identities=16% Similarity=0.105 Sum_probs=179.4
Q ss_pred eccccCCCCCCccceeEcCcccCCceEecccccccccCCh-hhHHHHHHHHHcCCceec-CCCC------C---------
Q 017781 49 RPRILIDVSKIDMNTTVLGFKISMPIMIAPTAMQKMAHPE-GEYATARAASAAGTIMTL-SSWS------T--------- 111 (366)
Q Consensus 49 ~pr~l~~~~~vd~st~l~g~~l~~Pi~iApm~~~~l~~~~-~e~~la~aa~~~G~~~~v-s~~~------~--------- 111 (366)
.|+.-..+++.|++++++|.+|++||++|+= ++ .+.+..+.+...|.++++ .|.. +
T Consensus 25 ~~~~~~~~~~~~L~~~~~Gl~~~NPv~lAAG-------~~~~~~e~~~~l~~~G~G~v~~ktvt~~pq~GNp~PR~~~~~ 97 (354)
T 4ef8_A 25 TGGQQMGRGSMSLQVNLLNNTFANPFMNAAG-------VMCTTTEELVAMTESASGSLVSKSCTPALREGNPTPRYQALP 97 (354)
T ss_dssp ---------CCCCCEEETTEEESSSEEECTT-------SSCSSHHHHHHHHHSSCSCEEEEEECSSCBCCSCSCCEEEET
T ss_pred CchhhcCCCCCCcceEECCEECCCCCEeccC-------CCCCCHHHHHHHHHcCCCeEEeCcccCcccCCCCCCcEEecc
Confidence 3455556788999999999999999999982 22 366788889999988764 2211 1
Q ss_pred -----------CCHH----HHhcc--C-CCceEEEeeecCCHHHHHHHHHHHH---HcCCCEEEEecCCCCCcchhHHHh
Q 017781 112 -----------SSVE----EVAST--G-PGIRFFQLYVYKDRNVVAQLVRRAE---RAGFKAIALTVDTPRLGRREADIK 170 (366)
Q Consensus 112 -----------~~~e----~i~~~--~-~~~~~~Qly~~~d~~~~~~~l~ra~---~~G~~ai~vtvd~p~~g~r~~d~~ 170 (366)
..++ ++.+. . ..|.++||. ..+.+.+.+.+++++ +.|+++|.||+.||..
T Consensus 98 ~~~iN~~G~~n~G~~~~~~~l~~~~~~~~~pvivsI~-G~~~~d~~~~a~~l~~~~~~g~d~ielNisCPn~-------- 168 (354)
T 4ef8_A 98 LGSINSMGLPNNGFDFYLAYAAEQHDYGKKPLFLSMS-GLSMRENVEMCKRLAAVATEKGVILELNLSCPNV-------- 168 (354)
T ss_dssp TEEEECCCCCBCCHHHHHHHHHHTCCTTTCCEEEEEC-CSSHHHHHHHHHHHHHHHHHHCCEEEEECSSCCS--------
T ss_pred hhhhccCCCCCcCHHHHHHHHHHHhhcCCCcEEEEec-cCCHHHHHHHHHHHhhhhhcCCCEEEEeCCCCCC--------
Confidence 1222 23222 1 257889986 567888888888888 5799999999999963
Q ss_pred hhcCCCCccccccccccccCCCccccchhhHHHhhhccCCCCCHHHHHHHHHhcCCCEEEEeccCH--HH--------HH
Q 017781 171 NRFTLPPFLTLKNFQGLDLGKMDEANDSGLAAYVAGQIDRSLSWKDVKWLQTITKLPILVKGVLTA--ED--------VQ 240 (366)
Q Consensus 171 ~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~i~~lr~~~~~pv~vK~v~~~--~d--------~~ 240 (366)
|.+ + .++ .+++...+.++++|+.+++||+||...+. ++ .+
T Consensus 169 -----~gg---~--------------------~l~--~~~e~~~~il~av~~~~~~PV~vKi~p~~d~~~~~~~a~~~~~ 218 (354)
T 4ef8_A 169 -----PGK---P--------------------QVA--YDFDAMRQCLTAVSEVYPHSFGVKMPPYFDFAHFDAAAEILNE 218 (354)
T ss_dssp -----TTS---C--------------------CGG--GSHHHHHHHHHHHHHHCCSCEEEEECCCCSHHHHHHHHHHHHT
T ss_pred -----CCc---h--------------------hhc--cCHHHHHHHHHHHHHhhCCCeEEEecCCCCHHHHHHHHHHHHh
Confidence 100 0 001 13444567899999999999999998643 22 47
Q ss_pred cC-CcEEEEcCCCc---------cC-------CCC---C----cchHHHHHHHHHHcCCCceEEEecCCCCHHHHHHHHH
Q 017781 241 AG-AAGIIVSNHGA---------RQ-------LDY---V----PATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALA 296 (366)
Q Consensus 241 aG-ad~I~vs~~gg---------~~-------~~~---~----~~~~~~l~~i~~~~~~~i~vi~~GGI~~~~dv~kala 296 (366)
+| +|+|+++|+.+ +. ..+ | +..++.+.++++.+ +++|||++|||++++|+.+++.
T Consensus 219 ~Gg~d~I~~~NT~~~g~~idi~~~~~~~~~~~~~gGlSG~~i~p~a~~~i~~v~~~~-~~ipII~~GGI~s~~da~~~l~ 297 (354)
T 4ef8_A 219 FPKVQFITCINSIGNGLVIDAETESVVIKPKQGFGGLGGRYVLPTALANINAFYRRC-PGKLIFGCGGVYTGEDAFLHVL 297 (354)
T ss_dssp CTTEEEEEECCCEEEEECEETTTTEESCSGGGGEEEEEGGGGHHHHHHHHHHHHHHC-TTSEEEEESCCCSHHHHHHHHH
T ss_pred CCCccEEEEecccCcceeeeccCCccccccccccCCCCCCCCchHHHHHHHHHHHhC-CCCCEEEECCcCCHHHHHHHHH
Confidence 87 99999988642 10 111 2 23578888888873 4799999999999999999999
Q ss_pred hCcCEEEecHHHHHHhhhcCHHHHHHHHHHHHHHHHHHHHHcCCCChhhhcccc
Q 017781 297 LGASGIFIGRPVVYSLAAEGEKGVRRVLEMLREEFELAMALSGCRSLKEITRDH 350 (366)
Q Consensus 297 lGAd~V~igr~~l~~l~~~G~~gv~~~~~~l~~el~~~m~~~G~~~l~el~~~~ 350 (366)
+|||+||+||++++. |+. +++.++++|+.+|...|+++++|+++..
T Consensus 298 aGAd~V~vgra~l~~----GP~----~~~~i~~~l~~~m~~~G~~si~el~G~~ 343 (354)
T 4ef8_A 298 AGASMVQVGTALQEE----GPS----IFERLTSELLGVMAKKRYQTLDEFRGKV 343 (354)
T ss_dssp HTEEEEEECHHHHHH----CTT----HHHHHHHHHHHHHHHHTCCSGGGTTTCC
T ss_pred cCCCEEEEhHHHHHh----CHH----HHHHHHHHHHHHHHHcCCCCHHHHHHHH
Confidence 999999999999874 553 6778999999999999999999999874
|
| >1ofd_A Ferredoxin-dependent glutamate synthase 2; oxidoreductase, complex enzyme, substrate channeling, amidotransferase, flavoprotein, iron-sulphur; HET: FMN AKG; 2.00A {Synechocystis SP} SCOP: b.80.4.1 c.1.4.1 d.153.1.1 PDB: 1llz_A* 1lm1_A* 1llw_A* 1ofe_A* | Back alignment and structure |
|---|
Probab=99.91 E-value=3.6e-23 Score=227.74 Aligned_cols=279 Identities=18% Similarity=0.146 Sum_probs=191.0
Q ss_pred hHhcccceeeeccccC--CCCCCccceeEcCcccCCceEecccccccccCChhhHHHHHHHHHcCCceecCCCCCCCHHH
Q 017781 39 NRNAFSRILFRPRILI--DVSKIDMNTTVLGFKISMPIMIAPTAMQKMAHPEGEYATARAASAAGTIMTLSSWSTSSVEE 116 (366)
Q Consensus 39 N~~~f~~i~l~pr~l~--~~~~vd~st~l~g~~l~~Pi~iApm~~~~l~~~~~e~~la~aa~~~G~~~~vs~~~~~~~e~ 116 (366)
....|+++...+..+. +++++|+++ .+..||+++||+++++ .++.+.+||.+|+++|+.+.+++.. .+.+.
T Consensus 838 ~~~~~r~l~~~~~~~~~i~~~ev~~~~-----~I~~Pfii~aMS~Gsl-S~ea~~aLA~Aas~aGg~~~tGeGg-~~pe~ 910 (1520)
T 1ofd_A 838 PVTALRDLLDFNADQPAISLEEVESVE-----SIVKRFCTGGMSLGAL-SREAHETLAIAMNRLGAKSNSGEGG-EDVVR 910 (1520)
T ss_dssp CSCSGGGGEEECCSSCCCCGGGSCCHH-----HHHTTEECCCBCTTTS-CHHHHHHHHHHHHHHTCBCEECTTC-CCGGG
T ss_pred CCcchhhhccccCCCCCCCchhhcccc-----cccCceEecCcCcccc-cHHHHHHHHHHHHHcCCceEeCCCC-CCHHH
Confidence 3357888888877664 345677665 5689999999998754 3567899999999999999998764 34444
Q ss_pred Hh-----------ccCC-----------CceEEEeeecCCHHHHHHHHHHHHHcCCCEEEEecCCCC---Cc-c----hh
Q 017781 117 VA-----------STGP-----------GIRFFQLYVYKDRNVVAQLVRRAERAGFKAIALTVDTPR---LG-R----RE 166 (366)
Q Consensus 117 i~-----------~~~~-----------~~~~~Qly~~~d~~~~~~~l~ra~~~G~~ai~vtvd~p~---~g-~----r~ 166 (366)
.. +..| .....|+-. .......+.+. .++.+.+.+..-. .| . +.
T Consensus 911 ~~~eir~~~~~~~~~~p~~~~~~nG~~~~~~I~Ql~s-g~FGVn~~~l~-----~ad~IeIKi~QGAKpG~GG~Lp~~kV 984 (1520)
T 1ofd_A 911 YLTLDDVDSEGNSPTLPHLHGLQNGDTANSAIKQIAS-GRFGVTPEYLM-----SGKQLEIKMAQGAKPGEGGQLPGKKV 984 (1520)
T ss_dssp GSCCCCCCTTSCCTTSTTCCSCCTTCCCCCSEEEECT-TCTTCCHHHHH-----HCSEEEEECCCTTSTTSCCEECGGGC
T ss_pred HHhhhccccccccccccccccccCcchHHHHHHHhcC-CCCccChhhcc-----chHHHHHHHhccCCCCCCCCCCHHHH
Confidence 32 0011 135667632 11122111221 2566777653211 10 0 00
Q ss_pred HHHhh-hcCCCCccccccccccccCCCccccchhhHHHhhhccCCCC-CH----HHHHHHHHhc-CCCEEEEeccC---H
Q 017781 167 ADIKN-RFTLPPFLTLKNFQGLDLGKMDEANDSGLAAYVAGQIDRSL-SW----KDVKWLQTIT-KLPILVKGVLT---A 236 (366)
Q Consensus 167 ~d~~~-~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~-~~----~~i~~lr~~~-~~pv~vK~v~~---~ 236 (366)
.+... -...|+++ ..+++..++++ ++ +.|+++|+.+ ++||++|.+.+ .
T Consensus 985 ~~~iA~~R~~~~Gv----------------------~lisP~~~~d~~s~edl~~~I~~Lk~~~~~~PV~VKlv~~~gi~ 1042 (1520)
T 1ofd_A 985 SEYIAMLRRSKPGV----------------------TLISPPPHHDIYSIEDLAQLIYDLHQINPEAQVSVKLVAEIGIG 1042 (1520)
T ss_dssp CHHHHHHHTSCTTC----------------------CEECCSSCTTCSSHHHHHHHHHHHHHHCTTSEEEEEEECSTTHH
T ss_pred HHHHHHHcCCCCCC----------------------CeeCCCCCcCcCCHHHHHHHHHHHHHhCCCCCEEEEecCCCChH
Confidence 00000 00011111 11122223333 33 4689999998 89999999853 2
Q ss_pred HH----HHcCCcEEEEcCCCccC--------CCCCcchHHHHHHHHHHc-----CCCceEEEecCCCCHHHHHHHHHhCc
Q 017781 237 ED----VQAGAAGIIVSNHGARQ--------LDYVPATIMALEEVVKAT-----QGRIPVFLDGGVRRGTDVFKALALGA 299 (366)
Q Consensus 237 ~d----~~aGad~I~vs~~gg~~--------~~~~~~~~~~l~~i~~~~-----~~~i~vi~~GGI~~~~dv~kalalGA 299 (366)
++ .++|||+|+|+||+|.+ .+++.|+...|+++.+++ ++++|||++|||+++.|++|||+|||
T Consensus 1043 ~~A~~a~kAGAD~IvVsG~eGGTgasp~~~~~~~GlPt~~aL~ev~~al~~~glr~~IpVIAdGGIrtG~DVakALaLGA 1122 (1520)
T 1ofd_A 1043 TIAAGVAKANADIIQISGHDGGTGASPLSSIKHAGSPWELGVTEVHRVLMENQLRDRVLLRADGGLKTGWDVVMAALMGA 1122 (1520)
T ss_dssp HHHHHHHHTTCSEEEEECTTCCCSSEEHHHHHHBCCCHHHHHHHHHHHHHHTTCGGGCEEEEESSCCSHHHHHHHHHTTC
T ss_pred HHHHHHHHcCCCEEEEeCCCCccCCCcchhhcCCchhHHHHHHHHHHHHHhcCCCCCceEEEECCCCCHHHHHHHHHcCC
Confidence 22 89999999999996432 246778889999998865 34799999999999999999999999
Q ss_pred CEEEecHHHHHHhhh---------------------------cCHHHHHHHHHHHHHHHHHHHHHcCCCChhhhc-ccce
Q 017781 300 SGIFIGRPVVYSLAA---------------------------EGEKGVRRVLEMLREEFELAMALSGCRSLKEIT-RDHI 351 (366)
Q Consensus 300 d~V~igr~~l~~l~~---------------------------~G~~gv~~~~~~l~~el~~~m~~~G~~~l~el~-~~~l 351 (366)
++|++||+||++++| +|+++|.++++.+.+||+.+|..+|+++++||. +..+
T Consensus 1123 daV~iGTafL~algc~~~r~Ch~~~CP~Gvatqdp~L~~~~~gg~e~V~n~l~~l~~ELr~~Ma~lG~~si~eL~gr~dl 1202 (1520)
T 1ofd_A 1123 EEYGFGSIAMIAEGCIMARVCHTNNCPVGVATQQERLRQRFKGVPGQVVNFFYFIAEEVRSLLAHLGYRSLDDIIGRTDL 1202 (1520)
T ss_dssp SEEECSHHHHHHTTCCCCCCGGGTCCTTSSSCCCHHHHTTCCCCHHHHHHHHHHHHHHHHHHHHHHTCSCGGGTTTCGGG
T ss_pred CeeEEcHHHHHHHHHHHHHhccCCCCCceeEeeCHHHHhhcCCcHHHHHHHHHHHHHHHHHHHHHhCCCCHHHHhCcceE
Confidence 999999999998754 268999999999999999999999999999995 4444
Q ss_pred e
Q 017781 352 V 352 (366)
Q Consensus 352 ~ 352 (366)
.
T Consensus 1203 l 1203 (1520)
T 1ofd_A 1203 L 1203 (1520)
T ss_dssp E
T ss_pred E
Confidence 3
|
| >4af0_A Inosine-5'-monophosphate dehydrogenase; oxidoreductase, GTP biosynthesis, drug resistance; HET: MOA IMP; 2.20A {Cryptococcus neoformans} PDB: 4af0_B* | Back alignment and structure |
|---|
Probab=99.90 E-value=1.9e-22 Score=202.28 Aligned_cols=137 Identities=21% Similarity=0.347 Sum_probs=112.8
Q ss_pred CHHHHHHHHHhc-CCCEEEEeccCHHH----HHcCCcEEEEcCCCcc------CCCCCcchHHHHHHHHHHcCC-CceEE
Q 017781 213 SWKDVKWLQTIT-KLPILVKGVLTAED----VQAGAAGIIVSNHGAR------QLDYVPATIMALEEVVKATQG-RIPVF 280 (366)
Q Consensus 213 ~~~~i~~lr~~~-~~pv~vK~v~~~~d----~~aGad~I~vs~~gg~------~~~~~~~~~~~l~~i~~~~~~-~i~vi 280 (366)
..+.++++|+.+ ++||+...+.+.+. .++|||+|.|.-.+|. ....|.|.+.++.+++++... .+|||
T Consensus 309 v~~~i~~ik~~~p~~~viaGNVaT~e~a~~Li~aGAD~vkVGiGpGSiCtTr~v~GvG~PQ~tAi~~~a~~a~~~~vpvI 388 (556)
T 4af0_A 309 QIEFIKWIKQTYPKIDVIAGNVVTREQAAQLIAAGADGLRIGMGSGSICITQEVMAVGRPQGTAVYAVAEFASRFGIPCI 388 (556)
T ss_dssp HHHHHHHHHHHCTTSEEEEEEECSHHHHHHHHHHTCSEEEECSSCSTTBCCTTTCCSCCCHHHHHHHHHHHHGGGTCCEE
T ss_pred HHHHHHHHHhhCCcceEEeccccCHHHHHHHHHcCCCEEeecCCCCcccccccccCCCCcHHHHHHHHHHHHHHcCCCEE
Confidence 457799999988 78999999999876 8999999999876563 134578899999999887643 69999
Q ss_pred EecCCCCHHHHHHHHHhCcCEEEecHHHH--------------------HHhhhc-----C-------------------
Q 017781 281 LDGGVRRGTDVFKALALGASGIFIGRPVV--------------------YSLAAE-----G------------------- 316 (366)
Q Consensus 281 ~~GGI~~~~dv~kalalGAd~V~igr~~l--------------------~~l~~~-----G------------------- 316 (366)
+||||++..|++|||++|||+||+|+.|- |+++.. +
T Consensus 389 ADGGI~~sGDi~KAlaaGAd~VMlGsllAGt~EsPGe~~~~~G~~~K~YrGMgS~~Am~~~~~~~~~~~~~~~~~~~~s~ 468 (556)
T 4af0_A 389 ADGGIGNIGHIAKALALGASAVMMGGLLAGTTESPGEYFYHEGKRVKVYRGMGSIEAMEHTQRGSASGKRSILGLDNAAT 468 (556)
T ss_dssp EESCCCSHHHHHHHHHTTCSEEEESTTTTTBTTSSSCCEEETTEEEEEEECTTSHHHHTTC------------CCSCSSE
T ss_pred ecCCcCcchHHHHHhhcCCCEEEEchhhccccCCCCcEEEECCEEEEeecccccHHHHHhcccCCcccccccccccccch
Confidence 99999999999999999999999999872 122110 0
Q ss_pred ------------HH----------HHHHHHHHHHHHHHHHHHHcCCCChhhhccc
Q 017781 317 ------------EK----------GVRRVLEMLREEFELAMALSGCRSLKEITRD 349 (366)
Q Consensus 317 ------------~~----------gv~~~~~~l~~el~~~m~~~G~~~l~el~~~ 349 (366)
++ .+.+++..|...|+..|.++|+.+|+||+..
T Consensus 469 dRyfq~~~~~~v~EGveg~VpykG~v~~~i~~l~gGlrs~m~y~Ga~~i~el~~~ 523 (556)
T 4af0_A 469 ARYFSEADAVKVAQGVSGDVADKGSINKFVPYLFTGLQHSLQDAAIKSVSELHSC 523 (556)
T ss_dssp EECCCBSSSSCBCCBCEEEEECCBCHHHHHHHHHHHHHHHHHHTTCSSHHHHHHH
T ss_pred hhhcccccccccCCccEEeccCCCcHHHHHHHHHHHHHHhhhccCCCcHHHHHHh
Confidence 01 2789999999999999999999999999864
|
| >3i65_A Dihydroorotate dehydrogenase homolog, mitochondrial; triazolopyrimidine,inhibitor, DSM1, FAD, flavoprotein, membrane, mitochondrion; HET: JZ8 FMN ORO LDA; 2.00A {Plasmodium falciparum 3D7} PDB: 3i68_A* 3i6r_A* 3o8a_A* 3sfk_A* | Back alignment and structure |
|---|
Probab=99.89 E-value=3.3e-22 Score=197.37 Aligned_cols=119 Identities=24% Similarity=0.315 Sum_probs=100.1
Q ss_pred CCC-EEEEeccCHH--H--------HHcCCcEEEEcCCCccCCC--------C---Cc----chHHHHHHHHHHcCCCce
Q 017781 225 KLP-ILVKGVLTAE--D--------VQAGAAGIIVSNHGARQLD--------Y---VP----ATIMALEEVVKATQGRIP 278 (366)
Q Consensus 225 ~~p-v~vK~v~~~~--d--------~~aGad~I~vs~~gg~~~~--------~---~~----~~~~~l~~i~~~~~~~i~ 278 (366)
++| |+||...+.+ + .++|+|+|+++|++..+.+ + |+ .+++.+.++++.+++++|
T Consensus 268 ~~P~V~VKi~pd~~~~~i~~iA~~a~~aGaDgIiv~Ntt~~r~dl~~~~~~~GGlSG~a~~p~al~~I~~v~~~v~~~iP 347 (415)
T 3i65_A 268 KKPLVFVKLAPDLNQEQKKEIADVLLETNIDGMIISNTTTQINDIKSFENKKGGVSGAKLKDISTKFICEMYNYTNKQIP 347 (415)
T ss_dssp SCCEEEEEECSCCCHHHHHHHHHHHHHHTCSEEEECCCBSCCCCCGGGTTCCSEEEEGGGHHHHHHHHHHHHHHTTTCSC
T ss_pred CCCeEEEEecCCCCHHHHHHHHHHHHHcCCcEEEEeCCCcccccccccccccCCcCCccchHHHHHHHHHHHHHhCCCCC
Confidence 689 9999986432 2 8999999999998764432 2 22 245789999998877899
Q ss_pred EEEecCCCCHHHHHHHHHhCcCEEEecHHHHHHhhhcCHHHHHHHHHHHHHHHHHHHHHcCCCChhhhcccce
Q 017781 279 VFLDGGVRRGTDVFKALALGASGIFIGRPVVYSLAAEGEKGVRRVLEMLREEFELAMALSGCRSLKEITRDHI 351 (366)
Q Consensus 279 vi~~GGI~~~~dv~kalalGAd~V~igr~~l~~l~~~G~~gv~~~~~~l~~el~~~m~~~G~~~l~el~~~~l 351 (366)
||++|||++++|+.++|++|||+|+|||++++. |+. ++..++++|+.+|...|+++++|+++...
T Consensus 348 IIg~GGI~s~eDa~e~l~aGAd~VqIgra~l~~----GP~----~~~~i~~~L~~~l~~~G~~si~e~~G~~~ 412 (415)
T 3i65_A 348 IIASGGIFSGLDALEKIEAGASVCQLYSCLVFN----GMK----SAVQIKRELNHLLYQRGYYNLKEAIGRKH 412 (415)
T ss_dssp EEECSSCCSHHHHHHHHHHTEEEEEESHHHHHH----GGG----HHHHHHHHHHHHHHHTTCSSSTTTTTTTC
T ss_pred EEEECCCCCHHHHHHHHHcCCCEEEEcHHHHhc----CHH----HHHHHHHHHHHHHHHcCCCCHHHHhChhc
Confidence 999999999999999999999999999999975 553 67789999999999999999999987643
|
| >1vhn_A Putative flavin oxidoreducatase; structural genomics, unknown function; HET: FMN; 1.59A {Thermotoga maritima} SCOP: c.1.4.1 | Back alignment and structure |
|---|
Probab=99.89 E-value=1.6e-23 Score=201.87 Aligned_cols=239 Identities=20% Similarity=0.193 Sum_probs=175.0
Q ss_pred ccCCceEecccccccccCChhhHHHHHHHHHcCCceecCCCCCC------C---HHHHhccCCCceEEEeeecCCHHHHH
Q 017781 69 KISMPIMIAPTAMQKMAHPEGEYATARAASAAGTIMTLSSWSTS------S---VEEVASTGPGIRFFQLYVYKDRNVVA 139 (366)
Q Consensus 69 ~l~~Pi~iApm~~~~l~~~~~e~~la~aa~~~G~~~~vs~~~~~------~---~e~i~~~~~~~~~~Qly~~~d~~~~~ 139 (366)
++++||++|||++.+ +.++...+++.|..++++++.+. . .+.+......+.++||+ ..+++...
T Consensus 2 ~l~nri~~APM~~~t------~~~~r~~~~~~G~gli~te~~~~~~~~~~~~~~~~~l~~~~~~~~~~QL~-g~~~~~~~ 74 (318)
T 1vhn_A 2 SLEVKVGLAPMAGYT------DSAFRTLAFEWGADFAFSEMVSAKGFLMNSQKTEELLPQPHERNVAVQIF-GSEPNELS 74 (318)
T ss_dssp ---CEEEECCCTTTC------SHHHHHHHHTTTCCCEECSCEEHHHHHTTCHHHHHHSCCTTCTTEEEEEE-CSCHHHHH
T ss_pred ccCCCEEECCCCCCC------cHHHHHHHHHHCcCEEEeCCEEEcccccCCHhHHHhhhCcCCCeEEEEeC-CCCHHHHH
Confidence 567999999998543 57899999999999888877432 1 12221112368999999 77899999
Q ss_pred HHHHHHHHcCCCEEEEecCCCCCcchhHHHhhhcCCCCccccccccccccCCCccccchhhHHHhhhccCCCCCHHHHHH
Q 017781 140 QLVRRAERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLTLKNFQGLDLGKMDEANDSGLAAYVAGQIDRSLSWKDVKW 219 (366)
Q Consensus 140 ~~l~ra~~~G~~ai~vtvd~p~~g~r~~d~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~i~~ 219 (366)
+.+++++++ +++|.||++||....|. .++ +..+. .++.+.++.+++
T Consensus 75 ~aa~~a~~~-~d~Iein~gcP~~~~r~----~~~---------------------------G~~l~--~~~~~~~eiv~~ 120 (318)
T 1vhn_A 75 EAARILSEK-YKWIDLNAGCPVRKVVK----EGA---------------------------GGALL--KDLRHFRYIVRE 120 (318)
T ss_dssp HHHHHHTTT-CSEEEEEECCCCHHHHH----TTC---------------------------GGGGG--SCHHHHHHHHHH
T ss_pred HHHHHHHHh-CCEEEEECCCCcHhcCC----CCc---------------------------ccchh--hCHHHHHHHHHH
Confidence 999999999 99999999999642221 111 00111 255678899999
Q ss_pred HHHhcCCCEEEEeccCH------HH----HHcCCcEEEEcCCCccCCCCCcchHHHHHHHHHHcCCCceEEEecCCCCHH
Q 017781 220 LQTITKLPILVKGVLTA------ED----VQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGT 289 (366)
Q Consensus 220 lr~~~~~pv~vK~v~~~------~d----~~aGad~I~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~i~vi~~GGI~~~~ 289 (366)
+++.+++||++|..... +. .++|+|+|+|++....+...+++.++.+.++++ ++|||++|||++++
T Consensus 121 v~~~~~~pv~vKir~G~~~~~~~~~a~~l~~~G~d~i~v~g~~~~~~~~~~~~~~~i~~i~~----~ipVi~~GgI~s~~ 196 (318)
T 1vhn_A 121 LRKSVSGKFSVKTRLGWEKNEVEEIYRILVEEGVDEVFIHTRTVVQSFTGRAEWKALSVLEK----RIPTFVSGDIFTPE 196 (318)
T ss_dssp HHHHCSSEEEEEEESCSSSCCHHHHHHHHHHTTCCEEEEESSCTTTTTSSCCCGGGGGGSCC----SSCEEEESSCCSHH
T ss_pred HHHhhCCCEEEEecCCCChHHHHHHHHHHHHhCCCEEEEcCCCccccCCCCcCHHHHHHHHc----CCeEEEECCcCCHH
Confidence 99999999999954321 11 899999999965322222245566666665553 79999999999999
Q ss_pred HHHHHHH-hCcCEEEecHHHHH-----Hhhhc----CH---HHHHHHHHHHHHHHHHHHHHcCCC-Chhhhccccee
Q 017781 290 DVFKALA-LGASGIFIGRPVVY-----SLAAE----GE---KGVRRVLEMLREEFELAMALSGCR-SLKEITRDHIV 352 (366)
Q Consensus 290 dv~kala-lGAd~V~igr~~l~-----~l~~~----G~---~gv~~~~~~l~~el~~~m~~~G~~-~l~el~~~~l~ 352 (366)
|+.++++ .|||+|++||+++. ..... |. .++.++++.+.++++..|.+.|.. .+.++++...+
T Consensus 197 da~~~l~~~gad~V~iGR~~l~~P~l~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~ 273 (318)
T 1vhn_A 197 DAKRALEESGCDGLLVARGAIGRPWIFKQIKDFLRSGKYSEPSREEILRTFERHLELLIKTKGERKAVVEMRKFLAG 273 (318)
T ss_dssp HHHHHHHHHCCSEEEESGGGTTCTTHHHHHHHHHHHSCCCCCCHHHHHHHHHHHHHHHHHHHCHHHHHHHHHTTHHH
T ss_pred HHHHHHHcCCCCEEEECHHHHhCcchHHHHHHHHhCCCCCCCCHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHH
Confidence 9999999 79999999998753 22211 43 467889999999999999999975 78888877544
|
| >1ep3_A Dihydroorotate dehydrogenase B (PYRD subunit); heterotetramer, alpha-beta barrel, beta sandwich, FAD domain alpha/beta NADP domain; HET: FMN FAD; 2.10A {Lactococcus lactis} SCOP: c.1.4.1 PDB: 1ep2_A* 1ep1_A* | Back alignment and structure |
|---|
Probab=99.89 E-value=1.1e-22 Score=194.48 Aligned_cols=239 Identities=18% Similarity=0.192 Sum_probs=169.4
Q ss_pred CCCCccceeEcCcccCCceEecc-cccccccCChhhHHHHHHHHHcCCceec-------------------------CCC
Q 017781 56 VSKIDMNTTVLGFKISMPIMIAP-TAMQKMAHPEGEYATARAASAAGTIMTL-------------------------SSW 109 (366)
Q Consensus 56 ~~~vd~st~l~g~~l~~Pi~iAp-m~~~~l~~~~~e~~la~aa~~~G~~~~v-------------------------s~~ 109 (366)
.+++|++++|+|+++++||++|| |.+.+ + .+.+.+.+.|+++++ +..
T Consensus 2 ~~~~~l~~~~~g~~l~npi~~aag~~~~~------~-~~~~~~~~~g~G~~~~~si~~~p~~g~~~p~l~~~~~g~~~~~ 74 (311)
T 1ep3_A 2 TENNRLSVKLPGLDLKNPIIPASGCFGFG------E-EYAKYYDLNKLGSIMVKATTLHPRFGNPTPRVAETASGMLNAI 74 (311)
T ss_dssp CCCTTTCEEETTEEESSSEEECTTSSTTS------T-TGGGTSCGGGSSCEEEEEECSSCBCCCCSCCEEEETTEEEECC
T ss_pred CCCCccceEECCEECCCCcEECCCCCCCC------H-HHHHHHHhcCCCEEEeCeeccCccCCCCCCeEEECCccccccc
Confidence 36899999999999999999999 53322 1 233444344444443 111
Q ss_pred --CCCCHHHH--------hccC-CCceEEEeeecCCHHHHHHHHHHHHH-cCCCEEEEecCCCCCcchhHHHhhhcCCCC
Q 017781 110 --STSSVEEV--------ASTG-PGIRFFQLYVYKDRNVVAQLVRRAER-AGFKAIALTVDTPRLGRREADIKNRFTLPP 177 (366)
Q Consensus 110 --~~~~~e~i--------~~~~-~~~~~~Qly~~~d~~~~~~~l~ra~~-~G~~ai~vtvd~p~~g~r~~d~~~~~~~p~ 177 (366)
.+...++. .+.. ..+.++|+.. .+.+...+.++++++ +|++++.+++.||..-.| +.
T Consensus 75 g~~~~~~~~~~~~~~~~~~~~~~~~p~~v~l~~-~~~~~~~~~a~~~~~~~g~d~iei~~~~p~~~~g------~~---- 143 (311)
T 1ep3_A 75 GLQNPGLEVIMTEKLPWLNENFPELPIIANVAG-SEEADYVAVCAKIGDAANVKAIELNISCPNVKHG------GQ---- 143 (311)
T ss_dssp CCCBCCHHHHHHTHHHHHHHHCTTSCEEEEECC-SSHHHHHHHHHHHTTSTTEEEEEEECCSEEGGGT------TE----
T ss_pred CCCCcCHHHHHHHHHHHHHhcCCCCcEEEEEcC-CCHHHHHHHHHHHhccCCCCEEEEeCCCCCCCCc------hh----
Confidence 12233332 2213 3678999974 467778888888888 999999999998852100 00
Q ss_pred ccccccccccccCCCccccchhhHHHhhhccCCCCCHHHHHHHHHhcCCCEEEEeccCH---HH-----HHcCCcEEEEc
Q 017781 178 FLTLKNFQGLDLGKMDEANDSGLAAYVAGQIDRSLSWKDVKWLQTITKLPILVKGVLTA---ED-----VQAGAAGIIVS 249 (366)
Q Consensus 178 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~i~~lr~~~~~pv~vK~v~~~---~d-----~~aGad~I~vs 249 (366)
.+. .++.+..+.++++++.+++||++|...+. .+ .++|+|+|+++
T Consensus 144 ------------------------~~g---~~~~~~~eii~~v~~~~~~pv~vk~~~~~~~~~~~a~~l~~~G~d~i~v~ 196 (311)
T 1ep3_A 144 ------------------------AFG---TDPEVAAALVKACKAVSKVPLYVKLSPNVTDIVPIAKAVEAAGADGLTMI 196 (311)
T ss_dssp ------------------------EGG---GCHHHHHHHHHHHHHHCSSCEEEEECSCSSCSHHHHHHHHHTTCSEEEEC
T ss_pred ------------------------hhc---CCHHHHHHHHHHHHHhcCCCEEEEECCChHHHHHHHHHHHHcCCCEEEEe
Confidence 000 13344577899999998999999976432 22 89999999998
Q ss_pred CC-------CccCC---------CCCcc----hHHHHHHHHHHcCCCceEEEecCCCCHHHHHHHHHhCcCEEEecHHHH
Q 017781 250 NH-------GARQL---------DYVPA----TIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFIGRPVV 309 (366)
Q Consensus 250 ~~-------gg~~~---------~~~~~----~~~~l~~i~~~~~~~i~vi~~GGI~~~~dv~kalalGAd~V~igr~~l 309 (366)
|. ..+.. ..++. .++.+.++++.+ ++|||++|||++++|+.+++++|||+|++||+|+
T Consensus 197 ~~~~g~~i~~~~~~~~~~~~~~g~~g~~~~~~~~~~i~~i~~~~--~ipvia~GGI~~~~d~~~~l~~GAd~V~vg~~~l 274 (311)
T 1ep3_A 197 NTLMGVRFDLKTRQPILANITGGLSGPAIKPVALKLIHQVAQDV--DIPIIGMGGVANAQDVLEMYMAGASAVAVGTANF 274 (311)
T ss_dssp CCEEECCBCTTTCSBSSTTSCEEEESGGGHHHHHHHHHHHHTTC--SSCEEECSSCCSHHHHHHHHHHTCSEEEECTHHH
T ss_pred CCCcccccCcccCCccccCCCCcccCccchHHHHHHHHHHHHhc--CCCEEEECCcCCHHHHHHHHHcCCCEEEECHHHH
Confidence 73 21100 11222 246777777766 7999999999999999999999999999999998
Q ss_pred HHhhhcCHHHHHHHHHHHHHHHHHHHHHcCCCChhhhcccc
Q 017781 310 YSLAAEGEKGVRRVLEMLREEFELAMALSGCRSLKEITRDH 350 (366)
Q Consensus 310 ~~l~~~G~~gv~~~~~~l~~el~~~m~~~G~~~l~el~~~~ 350 (366)
. +++ +++.++++++.+|...|+++++|+++..
T Consensus 275 ~-----~p~----~~~~i~~~l~~~~~~~g~~~~~~~~g~~ 306 (311)
T 1ep3_A 275 A-----DPF----VCPKIIDKLPELMDQYRIESLESLIQEV 306 (311)
T ss_dssp H-----CTT----HHHHHHHHHHHHHHHTTCSCHHHHHHHH
T ss_pred c-----CcH----HHHHHHHHHHHHHHHcCCCCHHHHhChh
Confidence 7 333 5678889999999999999999998754
|
| >3zwt_A Dihydroorotate dehydrogenase (quinone), mitochond; oxidoreductase; HET: FMN ORO KFZ; 1.55A {Homo sapiens} PDB: 1d3h_A* 2bxv_A* 2prh_A* 2prl_A* 2prm_A* 3f1q_A* 3fj6_A* 3fjl_A* 3g0u_A* 3g0x_A* 3zws_A* 1d3g_A* 3u2o_A* 2fpv_A* 2fpt_A* 2fpy_A* 2fqi_A* 3kvl_A* 3kvk_A* 3kvj_A* ... | Back alignment and structure |
|---|
Probab=99.88 E-value=2e-21 Score=190.27 Aligned_cols=240 Identities=19% Similarity=0.218 Sum_probs=163.6
Q ss_pred CCCCccceeEcCcccCCceEecccccccccCChhhHHHHHHHHHcCCceec-CCCCCC----------------------
Q 017781 56 VSKIDMNTTVLGFKISMPIMIAPTAMQKMAHPEGEYATARAASAAGTIMTL-SSWSTS---------------------- 112 (366)
Q Consensus 56 ~~~vd~st~l~g~~l~~Pi~iApm~~~~l~~~~~e~~la~aa~~~G~~~~v-s~~~~~---------------------- 112 (366)
.++.+++++++|.+|++||++|+ |.. .++ ...+...++|.++++ .|.+..
T Consensus 45 ~~~~~L~~~~~Gl~~~NPvglAa-G~~----~~~--~~~~~~~~~g~G~v~~ktvt~~pq~GNp~PR~~~~~~~~~~iN~ 117 (367)
T 3zwt_A 45 QDSDMLEVRVLGHKFRNPVGIAA-GFD----KHG--EAVDGLYKMGFGFVEIGSVTPKPQEGNPRPRVFRLPEDQAVINR 117 (367)
T ss_dssp CCCGGGCEEETTEEESSSEEECT-TSS----TTS--SSHHHHHHTTCSEEEEEEECSSCBCCSCSCCEEEEGGGTEEEEC
T ss_pred CCCCCCcEEECCEEcCCCCEeCC-CcC----CCH--HHHHHHHhcCcCeEEeCCccCCCCCCCCCCeEEEecCccceeec
Confidence 56789999999999999999996 321 222 234445556887764 322110
Q ss_pred ------CH----HHHhcc---------CCCceEEEeeecC----CHHHHHHHHHHHHHcCCCEEEEecCCCCCcchhHHH
Q 017781 113 ------SV----EEVAST---------GPGIRFFQLYVYK----DRNVVAQLVRRAERAGFKAIALTVDTPRLGRREADI 169 (366)
Q Consensus 113 ------~~----e~i~~~---------~~~~~~~Qly~~~----d~~~~~~~l~ra~~~G~~ai~vtvd~p~~g~r~~d~ 169 (366)
.+ +++.+. ...|..+||..++ +.+...+.++++.. +++++.||+.||...
T Consensus 118 ~G~~N~G~~~~~~~l~~~~~~~~~~~~~~~pv~vniggn~~t~~~~~dy~~~~~~~~~-~ad~ielNisCPn~~------ 190 (367)
T 3zwt_A 118 YGFNSHGLSVVEHRLRARQQKQAKLTEDGLPLGVNLGKNKTSVDAAEDYAEGVRVLGP-LADYLVVNVSSPNTA------ 190 (367)
T ss_dssp CCCCBCCHHHHHHHHHTTHHHHHHHHHTTCCEEEEECCCTTCSCHHHHHHHHHHHHGG-GCSEEEEECCCTTST------
T ss_pred cCCCCccHHHHHHHHHHHhhhccccccCCceEEEEEecCCCCCcCHHHHHHHHHHHhh-hCCEEEEECCCCCCC------
Confidence 11 122210 1246788886432 23333333344332 478999999998531
Q ss_pred hhhcCCCCccccccccccccCCCccccchhhHHHhhhccCCCCCHHHHHHHHHh-------cCCCEEEEeccCH--HH--
Q 017781 170 KNRFTLPPFLTLKNFQGLDLGKMDEANDSGLAAYVAGQIDRSLSWKDVKWLQTI-------TKLPILVKGVLTA--ED-- 238 (366)
Q Consensus 170 ~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~i~~lr~~-------~~~pv~vK~v~~~--~d-- 238 (366)
+. + .+ .+++..-+.++.+++. +++||+||...+. ++
T Consensus 191 --G~--------~--------------------~l---~~~~~l~~ll~av~~~~~~~~~~~~~Pv~vKi~p~~~~~~~~ 237 (367)
T 3zwt_A 191 --GL--------R--------------------SL---QGKAELRRLLTKVLQERDGLRRVHRPAVLVKIAPDLTSQDKE 237 (367)
T ss_dssp --TG--------G--------------------GG---GSHHHHHHHHHHHHHHHHTSCGGGCCEEEEEECSCCCHHHHH
T ss_pred --Cc--------c--------------------cc---CCHHHHHHHHHHHHHHHhhccccCCceEEEEeCCCCCHHHHH
Confidence 00 0 00 1222223445666543 6899999988543 23
Q ss_pred ------HHcCCcEEEEcCCC-ccC---------CCC---Ccc----hHHHHHHHHHHcCCCceEEEecCCCCHHHHHHHH
Q 017781 239 ------VQAGAAGIIVSNHG-ARQ---------LDY---VPA----TIMALEEVVKATQGRIPVFLDGGVRRGTDVFKAL 295 (366)
Q Consensus 239 ------~~aGad~I~vs~~g-g~~---------~~~---~~~----~~~~l~~i~~~~~~~i~vi~~GGI~~~~dv~kal 295 (366)
.++|+|+|+++|+. ++. ..+ |++ +++.+.++++.+++++|||++|||++++|+.+++
T Consensus 238 ~ia~~~~~aGadgi~v~ntt~~r~~~~~~~~~~~~gGlSG~~i~p~a~~~v~~i~~~v~~~ipvI~~GGI~s~~da~~~l 317 (367)
T 3zwt_A 238 DIASVVKELGIDGLIVTNTTVSRPAGLQGALRSETGGLSGKPLRDLSTQTIREMYALTQGRVPIIGVGGVSSGQDALEKI 317 (367)
T ss_dssp HHHHHHHHHTCCEEEECCCBSCCCTTCCCTTTTSSSEEEEGGGHHHHHHHHHHHHHHTTTCSCEEEESSCCSHHHHHHHH
T ss_pred HHHHHHHHcCCCEEEEeCCCcccccccccccccccCCcCCcccchhHHHHHHHHHHHcCCCceEEEECCCCCHHHHHHHH
Confidence 89999999999975 331 112 222 4678999999987789999999999999999999
Q ss_pred HhCcCEEEecHHHHHHhhhcCHHHHHHHHHHHHHHHHHHHHHcCCCChhhhcccc
Q 017781 296 ALGASGIFIGRPVVYSLAAEGEKGVRRVLEMLREEFELAMALSGCRSLKEITRDH 350 (366)
Q Consensus 296 alGAd~V~igr~~l~~l~~~G~~gv~~~~~~l~~el~~~m~~~G~~~l~el~~~~ 350 (366)
++|||+|++||++++. |+. ++..+.++|+.+|...|+++++|+++..
T Consensus 318 ~~GAd~V~vgra~l~~----gP~----~~~~i~~~l~~~m~~~G~~~i~e~~G~~ 364 (367)
T 3zwt_A 318 RAGASLVQLYTALTFW----GPP----VVGKVKRELEALLKEQGFGGVTDAIGAD 364 (367)
T ss_dssp HHTCSEEEESHHHHHH----CTH----HHHHHHHHHHHHHHHTTCSSHHHHTTGG
T ss_pred HcCCCEEEECHHHHhc----CcH----HHHHHHHHHHHHHHHcCCCCHHHhhCcc
Confidence 9999999999999874 553 6778899999999999999999998764
|
| >3oix_A Putative dihydroorotate dehydrogenase; dihydrooro oxidase; TIM barrel, oxidoreductase; HET: MLY FMN; 2.40A {Streptococcus mutans} | Back alignment and structure |
|---|
Probab=99.88 E-value=1.4e-21 Score=189.74 Aligned_cols=238 Identities=16% Similarity=0.164 Sum_probs=174.5
Q ss_pred CCccceeEcCcccCCceEecccccccccCCh-hhHHHHHHHHHcCCceecC-CCCCC-----------------------
Q 017781 58 KIDMNTTVLGFKISMPIMIAPTAMQKMAHPE-GEYATARAASAAGTIMTLS-SWSTS----------------------- 112 (366)
Q Consensus 58 ~vd~st~l~g~~l~~Pi~iApm~~~~l~~~~-~e~~la~aa~~~G~~~~vs-~~~~~----------------------- 112 (366)
..|++++++|.+|++||++|+ | ++ .+.+..+.+...|.++++. |.+..
T Consensus 35 m~~L~~~~~Gl~~~NPv~lAa-G------~~~~~~e~~~~~~~~G~G~v~~ktvt~~pq~gnp~PR~~~~~~~~iN~~G~ 107 (345)
T 3oix_A 35 MVSTHTTIGSFDFDNCLMNAA-G------VYCMTREELAAIDHSEAGSFVTXTGTLEERAGNPQPRYADTKLGSINSMGL 107 (345)
T ss_dssp -CCCCEEETTEEESCSEEECT-T------SSCSSHHHHHHHHTSSCSBCBCCCBCSSCBCCSCSCCEEECSSEEEECCCC
T ss_pred cCCcCeEECCEECCCCCEEcC-C------CCCCCHHHHHHHHHcCCCeEEeeeecCCCCCCCCCCcEEecccchhccCCC
Confidence 378999999999999999996 2 22 2557888899999988753 22111
Q ss_pred ---CH----HHHhc----cCCCceEEEeeecCCHHHHHHHHHHHHHcCCC-EEEEecCCCCCcchhHHHhhhcCCCCccc
Q 017781 113 ---SV----EEVAS----TGPGIRFFQLYVYKDRNVVAQLVRRAERAGFK-AIALTVDTPRLGRREADIKNRFTLPPFLT 180 (366)
Q Consensus 113 ---~~----e~i~~----~~~~~~~~Qly~~~d~~~~~~~l~ra~~~G~~-ai~vtvd~p~~g~r~~d~~~~~~~p~~~~ 180 (366)
.+ +++.+ ....|.++||. ..+.+...+.+++++++|+. +|.||+.||.. | +.
T Consensus 108 ~n~G~~~~~~~l~~~~~~~~~~pvivsI~-g~~~~d~~~~a~~l~~~g~~d~ielNisCPn~-------------~-G~- 171 (345)
T 3oix_A 108 PNLGINYYLDYVTELQKQPDSKNHFLSLV-GMSPEETHTILXMVEASKYQGLVELNLSCPNV-------------P-GX- 171 (345)
T ss_dssp CBSCHHHHHHHHHHHHHSTTCCCCEEEEC-CSSHHHHHHHHHHHHHSSCCSEEEEECSCCCS-------------T-TC-
T ss_pred CChhHHHHHHHHHHHhhccCCCCEEEEec-CCCHHHHHHHHHHHhccCCCcEEEEecCCCCc-------------C-Cc-
Confidence 11 22322 12367889997 56788888899999989988 99999999963 1 00
Q ss_pred cccccccccCCCccccchhhHHHhhhccCCCCCHHHHHHHHHhcCCCEEEEeccC--HHH-----HHcCCcEEEEcC---
Q 017781 181 LKNFQGLDLGKMDEANDSGLAAYVAGQIDRSLSWKDVKWLQTITKLPILVKGVLT--AED-----VQAGAAGIIVSN--- 250 (366)
Q Consensus 181 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~i~~lr~~~~~pv~vK~v~~--~~d-----~~aGad~I~vs~--- 250 (366)
+ .++ .+++...+.++++|+.+++||+||...+ .++ .++|+|+|.+.|
T Consensus 172 -~--------------------~l~--~~~e~l~~il~av~~~~~~PV~vKi~p~~~~~~~a~~~~~aga~~i~~int~n 228 (345)
T 3oix_A 172 -P--------------------QIA--YDFETTDQILSEVFTYFTKPLGIKLPPYFDIVHFDQAAAIFNXYPLTFVNCIN 228 (345)
T ss_dssp -C--------------------CGG--GCHHHHHHHHHHHTTTCCSCEEEEECCCCCHHHHHHHHHHHTTSCCSEEEECC
T ss_pred -h--------------------hhc--CCHHHHHHHHHHHHHHhCCCeEEEECCCCCHHHHHHHHHHhCCCceEEEEeec
Confidence 0 000 1334456779999999999999998853 333 667776664322
Q ss_pred C--------Ccc-CC--------CCCcc----hHHHHHHHHHHcCCCceEEEecCCCCHHHHHHHHHhCcCEEEecHHHH
Q 017781 251 H--------GAR-QL--------DYVPA----TIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFIGRPVV 309 (366)
Q Consensus 251 ~--------gg~-~~--------~~~~~----~~~~l~~i~~~~~~~i~vi~~GGI~~~~dv~kalalGAd~V~igr~~l 309 (366)
. ..+ .+ .+|++ +++.+.++++.+++++|||++|||++++|+.++|++|||+|+|||+|+
T Consensus 229 t~g~~~~i~~~~~~~~~~~~~gGlSG~ai~p~a~~~v~~i~~~~~~~ipIIg~GGI~s~~da~~~l~aGAd~V~igra~~ 308 (345)
T 3oix_A 229 SIGNGLVIEDETVVIXPKNGFGGIGGDYVKPTALANVHAFYKRLNPSIQIIGTGGVXTGRDAFEHILCGASMVQIGTALH 308 (345)
T ss_dssp CEEEEECEETTEESCSGGGGEEEEEEGGGHHHHHHHHHHHHTTSCTTSEEEEESSCCSHHHHHHHHHHTCSEEEESHHHH
T ss_pred ccccceeeccCccccccccccCCcCCccccHHHHHHHHHHHHHcCCCCcEEEECCCCChHHHHHHHHhCCCEEEEChHHH
Confidence 1 111 01 11233 367888888888668999999999999999999999999999999987
Q ss_pred HHhhhcCHHHHHHHHHHHHHHHHHHHHHcCCCChhhhccc
Q 017781 310 YSLAAEGEKGVRRVLEMLREEFELAMALSGCRSLKEITRD 349 (366)
Q Consensus 310 ~~l~~~G~~gv~~~~~~l~~el~~~m~~~G~~~l~el~~~ 349 (366)
+. |+. +++.+.++|+.+|...|+++++|+++.
T Consensus 309 ~~----gP~----~~~~i~~~L~~~l~~~G~~si~e~~G~ 340 (345)
T 3oix_A 309 QE----GPQ----IFKRITKELXAIMTEKGYETLEDFRGK 340 (345)
T ss_dssp HH----CTH----HHHHHHHHHHHHHHHHTCCSGGGTTTC
T ss_pred hc----ChH----HHHHHHHHHHHHHHHcCCCCHHHHHhH
Confidence 74 653 677899999999999999999999875
|
| >1me8_A Inosine-5'-monophosphate dehydrogenase; alpha beta barrel, oxidoreductase; HET: RVP; 1.90A {Tritrichomonas foetus} SCOP: c.1.5.1 PDB: 1ak5_A* 1me7_A* 1me9_A* 1meh_A* 1mei_A* 1mew_A* 1pvn_A* 1lrt_A* | Back alignment and structure |
|---|
Probab=99.88 E-value=1.1e-21 Score=200.00 Aligned_cols=136 Identities=20% Similarity=0.282 Sum_probs=114.4
Q ss_pred CHHHHHHHHHhc-C-CCEEEEeccCHHH----HHcCCcEEEEcCCCcc-----C-CCCCcchHHHHHHHHHHcCC-----
Q 017781 213 SWKDVKWLQTIT-K-LPILVKGVLTAED----VQAGAAGIIVSNHGAR-----Q-LDYVPATIMALEEVVKATQG----- 275 (366)
Q Consensus 213 ~~~~i~~lr~~~-~-~pv~vK~v~~~~d----~~aGad~I~vs~~gg~-----~-~~~~~~~~~~l~~i~~~~~~----- 275 (366)
.++.++++++.+ + .|++++.+.+.++ .++|+|+|+|+.++|. . .+++.|++.+|.++.+++..
T Consensus 270 ~~~~i~~lk~~~~~~~~Vi~G~V~t~~~a~~l~~aGad~I~Vg~~~g~~~~~r~~~~~g~p~~~~l~~v~~~~~~~~~~~ 349 (503)
T 1me8_A 270 QKITIGWIREKYGDKVKVGAGNIVDGEGFRYLADAGADFIKIGIGGGSICITREQKGIGRGQATAVIDVVAERNKYFEET 349 (503)
T ss_dssp HHHHHHHHHHHHGGGSCEEEEEECSHHHHHHHHHHTCSEEEECSSCSTTCCSTTTTCCCCCHHHHHHHHHHHHHHHHHHH
T ss_pred hhhHHHHHHHhCCCCceEeeccccCHHHHHHHHHhCCCeEEecccCCcCcccccccCCCCchHHHHHHHHHHHHHHhhhc
Confidence 467899999987 5 8999999999877 9999999999665542 2 24578899999999876532
Q ss_pred --CceEEEecCCCCHHHHHHHHHhCcCEEEecHHHH--------------------HHhhhcCH----------------
Q 017781 276 --RIPVFLDGGVRRGTDVFKALALGASGIFIGRPVV--------------------YSLAAEGE---------------- 317 (366)
Q Consensus 276 --~i~vi~~GGI~~~~dv~kalalGAd~V~igr~~l--------------------~~l~~~G~---------------- 317 (366)
++|||++|||+++.|++|||++|||+|++|++|+ |+++..|+
T Consensus 350 ~~~ipvia~GGi~~~~di~kAlalGA~~V~iG~~~~~~~E~~~~~~~~~g~~~k~~~g~~s~~~~~~~~~~~~~~~~~~~ 429 (503)
T 1me8_A 350 GIYIPVCSDGGIVYDYHMTLALAMGADFIMLGRYFARFEESPTRKVTINGSVMKEYWGEGSSRARNWQRYDLGGKQKLSF 429 (503)
T ss_dssp SEECCEEEESCCCSHHHHHHHHHTTCSEEEESHHHHTBTTSSSCEEEETTEEEEEEECTTSHHHHCC-------------
T ss_pred CCCceEEEeCCCCCHHHHHHHHHcCCCEEEECchhhccccCCCceEEECCeEEEeecCccchhHhhccccccccccceec
Confidence 5999999999999999999999999999999995 33332222
Q ss_pred -----------HHHHHHHHHHHHHHHHHHHHcCCCChhhhcc
Q 017781 318 -----------KGVRRVLEMLREEFELAMALSGCRSLKEITR 348 (366)
Q Consensus 318 -----------~gv~~~~~~l~~el~~~m~~~G~~~l~el~~ 348 (366)
.+|.++++.|..||+..|.++|+.+++||++
T Consensus 430 ~eg~~~~~~~~~~v~~~~~~~~~~l~~~m~~~G~~~i~~l~~ 471 (503)
T 1me8_A 430 EEGVDSYVPYAGKLKDNVEASLNKVKSTMCNCGALTIPQLQS 471 (503)
T ss_dssp -CCCEEEEECCBCHHHHHHHHHHHHHHHHHHTTCSBHHHHHH
T ss_pred ccceeEecCCCCcHHHHHHHHHHHHHHHHHhcCcchHHHHHh
Confidence 2578999999999999999999999999986
|
| >3usb_A Inosine-5'-monophosphate dehydrogenase; structural genomics, center for structural genomics of infec diseases, csgid, TIM barrel, CBS-domain; HET: MSE IMP; 2.38A {Bacillus anthracis} PDB: 3tsd_A* 3tsb_A* | Back alignment and structure |
|---|
Probab=99.87 E-value=5.4e-21 Score=194.97 Aligned_cols=137 Identities=24% Similarity=0.335 Sum_probs=110.6
Q ss_pred CHHHHHHHHHhcC-CCEEEEeccCHHH----HHcCCcEEEEcCCCccC------CCCCcchHHHHHHHHHHcCC-CceEE
Q 017781 213 SWKDVKWLQTITK-LPILVKGVLTAED----VQAGAAGIIVSNHGARQ------LDYVPATIMALEEVVKATQG-RIPVF 280 (366)
Q Consensus 213 ~~~~i~~lr~~~~-~pv~vK~v~~~~d----~~aGad~I~vs~~gg~~------~~~~~~~~~~l~~i~~~~~~-~i~vi 280 (366)
.++.++++++.++ +|++++.+.+.++ .++|+|+|+++.++|.. ..++.++++++.++++.++. ++|||
T Consensus 284 v~~~i~~i~~~~~~~~vi~g~v~t~e~a~~~~~aGad~i~vg~g~gsi~~~~~~~g~g~p~~~~l~~v~~~~~~~~iPVI 363 (511)
T 3usb_A 284 VIDKVKEVRAKYPSLNIIAGNVATAEATKALIEAGANVVKVGIGPGSICTTRVVAGVGVPQLTAVYDCATEARKHGIPVI 363 (511)
T ss_dssp HHHHHHHHHHHCTTSEEEEEEECSHHHHHHHHHHTCSEEEECSSCSTTCCHHHHHCCCCCHHHHHHHHHHHHHTTTCCEE
T ss_pred hhhHHHHHHHhCCCceEEeeeeccHHHHHHHHHhCCCEEEECCCCccccccccccCCCCCcHHHHHHHHHHHHhCCCcEE
Confidence 3578999999984 8999999999887 99999999996655531 23567889999888776643 69999
Q ss_pred EecCCCCHHHHHHHHHhCcCEEEecHHHHH--------------------HhhhcC-------------------HHH--
Q 017781 281 LDGGVRRGTDVFKALALGASGIFIGRPVVY--------------------SLAAEG-------------------EKG-- 319 (366)
Q Consensus 281 ~~GGI~~~~dv~kalalGAd~V~igr~~l~--------------------~l~~~G-------------------~~g-- 319 (366)
++|||+++.|++|||++|||+|++|++|+. +++..| ++|
T Consensus 364 a~GGI~~~~di~kala~GA~~V~vGs~~~~~~es~g~~~~~~g~~~k~~~gm~s~~a~~~~~~~r~~~~~~~~~~~eG~~ 443 (511)
T 3usb_A 364 ADGGIKYSGDMVKALAAGAHVVMLGSMFAGVAESPGETEIYQGRQFKVYRGMGSVGAMEKGSKDRYFQEGNKKLVPEGIE 443 (511)
T ss_dssp EESCCCSHHHHHHHHHTTCSEEEESTTTTTBTTSSSCEEECSSSEEEC--------------------------------
T ss_pred EeCCCCCHHHHHHHHHhCchhheecHHHhcCccCchhhhhccCeeeeeeeccccHHHHhcccccchhccccccccCCCcE
Confidence 999999999999999999999999999843 332211 122
Q ss_pred --------HHHHHHHHHHHHHHHHHHcCCCChhhhccc
Q 017781 320 --------VRRVLEMLREEFELAMALSGCRSLKEITRD 349 (366)
Q Consensus 320 --------v~~~~~~l~~el~~~m~~~G~~~l~el~~~ 349 (366)
+.++++.|..+|+..|.++|+.++++|+..
T Consensus 444 ~~~~~~~~~~~~~~~~~~~lr~~m~~~G~~~i~~l~~~ 481 (511)
T 3usb_A 444 GRVPYKGPLADTVHQLVGGLRAGMGYCGAQDLEFLREN 481 (511)
T ss_dssp --CBCCBCHHHHHHHHHHHHHHHHHHTTCSBHHHHHHH
T ss_pred EeCCCCCCHHHHHHHHHHHHHHHHHhcCcccHHHHHhC
Confidence 678899999999999999999999999864
|
| >1tv5_A Dhodehase, dihydroorotate dehydrogenase homolog, mitochondri, dihydroorotate; alpha-beta barrel, TIM barrel, oxidoreductase; HET: A26 FMN ORO N8E; 2.40A {Plasmodium falciparum} SCOP: c.1.4.1 | Back alignment and structure |
|---|
Probab=99.87 E-value=6.3e-21 Score=190.42 Aligned_cols=120 Identities=23% Similarity=0.320 Sum_probs=99.4
Q ss_pred cCCC-EEEEeccCH--HH--------HHcCCcEEEEcCCCccCCC--------C---Ccc----hHHHHHHHHHHcCCCc
Q 017781 224 TKLP-ILVKGVLTA--ED--------VQAGAAGIIVSNHGARQLD--------Y---VPA----TIMALEEVVKATQGRI 277 (366)
Q Consensus 224 ~~~p-v~vK~v~~~--~d--------~~aGad~I~vs~~gg~~~~--------~---~~~----~~~~l~~i~~~~~~~i 277 (366)
.++| |++|...+. ++ .++|+|+|+++|++..+.+ + |++ +++.+.++++.+++++
T Consensus 295 ~~~P~V~vKispd~~~ed~~~iA~~~~~aGaDgI~v~ntt~~~~d~~~~~~~~GGlSG~~~~~~sl~~i~~v~~~v~~~i 374 (443)
T 1tv5_A 295 KKKPLVFVKLAPDLNQEQKKEIADVLLETNIDGMIISNTTTQINDIKSFENKKGGVSGAKLKDISTKFICEMYNYTNKQI 374 (443)
T ss_dssp SSCCEEEEEECSCCCHHHHHHHHHHHHHTTCSEEEECCCBSCCCCCGGGTTCCSEEEEHHHHHHHHHHHHHHHHHTTTCS
T ss_pred CCCCeEEEEeCCCCCHHHHHHHHHHHHHcCCCEEEEECCCcccccccccccccCCcCCCcchHHHHHHHHHHHHHcCCCC
Confidence 4689 999988542 23 8999999999998764322 1 221 4578889998887789
Q ss_pred eEEEecCCCCHHHHHHHHHhCcCEEEecHHHHHHhhhcCHHHHHHHHHHHHHHHHHHHHHcCCCChhhhcccce
Q 017781 278 PVFLDGGVRRGTDVFKALALGASGIFIGRPVVYSLAAEGEKGVRRVLEMLREEFELAMALSGCRSLKEITRDHI 351 (366)
Q Consensus 278 ~vi~~GGI~~~~dv~kalalGAd~V~igr~~l~~l~~~G~~gv~~~~~~l~~el~~~m~~~G~~~l~el~~~~l 351 (366)
|||++|||++++|+.++|++|||+|++||++++. |+ .++..++++|+.+|...|+++++|+++...
T Consensus 375 PVIg~GGI~s~~DA~e~l~aGAd~Vqigrall~~----gP----~l~~~i~~~l~~~l~~~G~~si~e~~G~~~ 440 (443)
T 1tv5_A 375 PIIASGGIFSGLDALEKIEAGASVCQLYSCLVFN----GM----KSAVQIKRELNHLLYQRGYYNLKEAIGRKH 440 (443)
T ss_dssp CEEEESSCCSHHHHHHHHHTTEEEEEESHHHHHH----GG----GHHHHHHHHHHHHHHHHTCSSSGGGTTTTC
T ss_pred cEEEECCCCCHHHHHHHHHcCCCEEEEcHHHHhc----Ch----HHHHHHHHHHHHHHHHhCCCCHHHHhhhhc
Confidence 9999999999999999999999999999999973 44 367788999999999999999999998753
|
| >1f76_A Dihydroorotate dehydrogenase; monomer, alpha-beta-barrel, FMN binding domain, orotate complex, oxidoreductase; HET: MSE FMN ORO; 2.50A {Bacteria} SCOP: c.1.4.1 | Back alignment and structure |
|---|
Probab=99.86 E-value=1.1e-20 Score=183.19 Aligned_cols=232 Identities=17% Similarity=0.200 Sum_probs=141.6
Q ss_pred CCccceeEcCcccCCceEecccccccccCChhhHHHHHHHHHcCCceecCCCCCCCHHHHhccCCCceEEEeeec-----
Q 017781 58 KIDMNTTVLGFKISMPIMIAPTAMQKMAHPEGEYATARAASAAGTIMTLSSWSTSSVEEVASTGPGIRFFQLYVY----- 132 (366)
Q Consensus 58 ~vd~st~l~g~~l~~Pi~iApm~~~~l~~~~~e~~la~aa~~~G~~~~vs~~~~~~~e~i~~~~~~~~~~Qly~~----- 132 (366)
.+|++++++|+++++||++|++ . +.+++ +++++++.|+++++....+ .+.. ..++.+.|||+|..
T Consensus 42 ~~~l~~~i~g~~l~npi~~aag-~----~~~~~--~~~~~a~~G~g~i~~~~~~--~~~~-~g~~~pr~~~~~~d~~~in 111 (336)
T 1f76_A 42 VPAKPVNCMGLTFKNPLGLAAG-L----DKDGE--CIDALGAMGFGSIEIGTVT--PRPQ-PGNDKPRLFRLVDAEGLIN 111 (336)
T ss_dssp CCCCCEEETTEEESSSEEECTT-S----STTCC--CHHHHHHTTCSEEEEEEEC--SSCB-CCSCSCCEEEETTTTEEEE
T ss_pred CCCCCeEECCEEcCCCcEeCcc-c----CCcHH--HHHHHHHcCccEEEeCCCC--CCCC-CCCCCcceeeccccceeee
Confidence 4899999999999999999963 2 33333 8888999999987533221 1111 12235567776510
Q ss_pred ----CCHHHHHHHHHHHHHcCCC-EEEEecCCCCC---cchhHHHhhhcC-CCCccccccccccccCCCccccchhhHHH
Q 017781 133 ----KDRNVVAQLVRRAERAGFK-AIALTVDTPRL---GRREADIKNRFT-LPPFLTLKNFQGLDLGKMDEANDSGLAAY 203 (366)
Q Consensus 133 ----~d~~~~~~~l~ra~~~G~~-ai~vtvd~p~~---g~r~~d~~~~~~-~p~~~~~~~~~~~~~~~~~~~~~~~~~~~ 203 (366)
.++. ..+.++++++.+.+ .+++++..... .....++..... +..+. ..+.. +......++ ...
T Consensus 112 ~~g~~~~g-~~~~~~~~~~~~~~~~~~v~i~~~~~~~i~~~~~~~~~aa~~~~~g~-----d~iei-n~~sP~~~g-~~~ 183 (336)
T 1f76_A 112 RMGFNNLG-VDNLVENVKKAHYDGVLGINIGKNKDTPVEQGKDDYLICMEKIYAYA-----GYIAI-NISSPNTPG-LRT 183 (336)
T ss_dssp CCCCCBCC-HHHHHHHHHHCCCCSEEEEEECCCTTSCGGGTHHHHHHHHHHHGGGC-----SEEEE-ECCCSSSTT-GGG
T ss_pred cCCCCCcC-HHHHHHHHHhcccCCcEEEEecCCCCCcccccHHHHHHHHHHHhccC-----CEEEE-EccCCCCCC-ccc
Confidence 0111 23444555554443 45565532110 011223322211 00000 00000 000000011 011
Q ss_pred hhhccCCCCCHHHHHHHHHhc---------CCCEEEEeccC--HHH--------HHcCCcEEEEcCCC-ccC--------
Q 017781 204 VAGQIDRSLSWKDVKWLQTIT---------KLPILVKGVLT--AED--------VQAGAAGIIVSNHG-ARQ-------- 255 (366)
Q Consensus 204 ~~~~~d~~~~~~~i~~lr~~~---------~~pv~vK~v~~--~~d--------~~aGad~I~vs~~g-g~~-------- 255 (366)
. .++.+.|+.++++|+.+ ++||++|.... .++ .++|+|+|+|+|++ +++
T Consensus 184 ~---~~~~~~~~il~~vr~~~~~~~~~~g~~~Pv~vKi~~~~~~~~~~~~a~~l~~~Gvd~i~vsn~~~~~~~~~~~~~~ 260 (336)
T 1f76_A 184 L---QYGEALDDLLTAIKNKQNDLQAMHHKYVPIAVKIAPDLSEEELIQVADSLVRHNIDGVIATNTTLDRSLVQGMKNC 260 (336)
T ss_dssp G---GSHHHHHHHHHHHHHHHHHHHHHHTSCCCEEEECCSCCCHHHHHHHHHHHHHTTCSEEEECCCBCCCTTSTTSTTT
T ss_pred c---cCHHHHHHHHHHHHHHHHhhhhcccccCceEEEecCCCCHHHHHHHHHHHHHcCCcEEEEeCCccccccccccccc
Confidence 1 23456788999999998 89999997743 222 89999999999975 332
Q ss_pred -CCC---Cc----chHHHHHHHHHHcCCCceEEEecCCCCHHHHHHHHHhCcCEEEecHHHHH
Q 017781 256 -LDY---VP----ATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFIGRPVVY 310 (366)
Q Consensus 256 -~~~---~~----~~~~~l~~i~~~~~~~i~vi~~GGI~~~~dv~kalalGAd~V~igr~~l~ 310 (366)
..+ |+ .+++.+.++++.+++++|||++|||++++|+.++|++|||+|++||++++
T Consensus 261 ~~~gg~~g~~~~~~~~~~i~~i~~~~~~~ipVi~~GGI~~~~da~~~l~~GAd~V~igr~~l~ 323 (336)
T 1f76_A 261 DQTGGLSGRPLQLKSTEIIRRLSLELNGRLPIIGVGGIDSVIAAREKIAAGASLVQIYSGFIF 323 (336)
T ss_dssp TCSSEEEEGGGHHHHHHHHHHHHHHHTTSSCEEEESSCCSHHHHHHHHHHTCSEEEESHHHHH
T ss_pred ccCCCcCCchhHHHHHHHHHHHHHHhCCCCCEEEECCCCCHHHHHHHHHCCCCEEEeeHHHHh
Confidence 011 22 24577888888887789999999999999999999999999999999997
|
| >4avf_A Inosine-5'-monophosphate dehydrogenase; oxidoreductase; 2.23A {Pseudomonas aeruginosa} | Back alignment and structure |
|---|
Probab=99.86 E-value=4.4e-20 Score=187.41 Aligned_cols=137 Identities=22% Similarity=0.382 Sum_probs=111.9
Q ss_pred CHHHHHHHHHhc-CCCEEEEeccCHHH----HHcCCcEEEEcCCCccC------CCCCcchHHHHHHHHHHcCC-CceEE
Q 017781 213 SWKDVKWLQTIT-KLPILVKGVLTAED----VQAGAAGIIVSNHGARQ------LDYVPATIMALEEVVKATQG-RIPVF 280 (366)
Q Consensus 213 ~~~~i~~lr~~~-~~pv~vK~v~~~~d----~~aGad~I~vs~~gg~~------~~~~~~~~~~l~~i~~~~~~-~i~vi 280 (366)
.++.++++|+.+ ++||+++.+.+.++ .++|||+|+|++.+|.. ...+.+.++++.+++++++. ++|||
T Consensus 257 ~~~~v~~i~~~~p~~~Vi~g~v~t~e~a~~l~~aGaD~I~vg~g~Gs~~~t~~~~g~g~p~~~~l~~v~~~~~~~~iPVI 336 (490)
T 4avf_A 257 VIERVRWVKQTFPDVQVIGGNIATAEAAKALAEAGADAVKVGIGPGSICTTRIVAGVGVPQISAIANVAAALEGTGVPLI 336 (490)
T ss_dssp HHHHHHHHHHHCTTSEEEEEEECSHHHHHHHHHTTCSEEEECSSCSTTCHHHHHTCBCCCHHHHHHHHHHHHTTTTCCEE
T ss_pred HHHHHHHHHHHCCCceEEEeeeCcHHHHHHHHHcCCCEEEECCCCCcCCCccccCCCCccHHHHHHHHHHHhccCCCcEE
Confidence 457899999998 78999998999887 99999999996544431 34567899999999987743 69999
Q ss_pred EecCCCCHHHHHHHHHhCcCEEEecHHHHH--------------------HhhhcC------------------------
Q 017781 281 LDGGVRRGTDVFKALALGASGIFIGRPVVY--------------------SLAAEG------------------------ 316 (366)
Q Consensus 281 ~~GGI~~~~dv~kalalGAd~V~igr~~l~--------------------~l~~~G------------------------ 316 (366)
++|||+++.|+.|+|++|||+|++|++|+. +++..|
T Consensus 337 a~GGI~~~~di~kal~~GAd~V~vGs~~~~~~Esp~~~~~~~g~~~k~~~gm~s~~a~~~~~~~~~r~~~~~~~~~~~~~ 416 (490)
T 4avf_A 337 ADGGIRFSGDLAKAMVAGAYCVMMGSMFAGTEEAPGEIELFQGRSYKSYRGMGSLGAMSGSQGSSDRYFQDASAGAEKLV 416 (490)
T ss_dssp EESCCCSHHHHHHHHHHTCSEEEECTTTTTBTTSSSCEEEETTEEEEC--------------------------------
T ss_pred EeCCCCCHHHHHHHHHcCCCeeeecHHHhcCCCCCCceEeECCeEeeeecCcccHHHHhhcccccchhhccccccccccc
Confidence 999999999999999999999999998843 322100
Q ss_pred HH----------HHHHHHHHHHHHHHHHHHHcCCCChhhhccc
Q 017781 317 EK----------GVRRVLEMLREEFELAMALSGCRSLKEITRD 349 (366)
Q Consensus 317 ~~----------gv~~~~~~l~~el~~~m~~~G~~~l~el~~~ 349 (366)
++ .+.++++.|..+|+..|.++|+.+++||+..
T Consensus 417 ~eg~~~~v~~~g~~~~~~~~~~~~lr~~~~~~g~~~i~~l~~~ 459 (490)
T 4avf_A 417 PEGIEGRVPYKGALSAIVHQLMGGLRAAMGYTGSADIQQMRTQ 459 (490)
T ss_dssp -------CBCCBCHHHHHHHHHHHHHHHHHHHTCSSHHHHHHS
T ss_pred CCCcEEcCCcCCCHHHHHHHHHHHHHHHHHhcCcCcHHHHHhC
Confidence 12 3568999999999999999999999999865
|
| >4fxs_A Inosine-5'-monophosphate dehydrogenase; structural genomics, IMPDH, IMP, mycophenolic acid, MOA; HET: IMP MOA; 2.24A {Vibrio cholerae o1 biovar el tor} | Back alignment and structure |
|---|
Probab=99.85 E-value=3.3e-20 Score=188.53 Aligned_cols=137 Identities=23% Similarity=0.337 Sum_probs=112.4
Q ss_pred CHHHHHHHHHhc-CCCEEEEeccCHHH----HHcCCcEEEEcCCCccC------CCCCcchHHHHHHHHHHcCC-CceEE
Q 017781 213 SWKDVKWLQTIT-KLPILVKGVLTAED----VQAGAAGIIVSNHGARQ------LDYVPATIMALEEVVKATQG-RIPVF 280 (366)
Q Consensus 213 ~~~~i~~lr~~~-~~pv~vK~v~~~~d----~~aGad~I~vs~~gg~~------~~~~~~~~~~l~~i~~~~~~-~i~vi 280 (366)
.++.++++|+.+ ++||+++.+.+.++ .++|||+|+|++..|.. ...+.+.++++.+++++++. ++|||
T Consensus 259 ~~~~i~~ir~~~p~~~Vi~g~v~t~e~a~~l~~aGaD~I~Vg~g~Gs~~~tr~~~g~g~p~~~~i~~v~~~~~~~~iPVI 338 (496)
T 4fxs_A 259 VLQRIRETRAAYPHLEIIGGNVATAEGARALIEAGVSAVKVGIGPGSICTTRIVTGVGVPQITAIADAAGVANEYGIPVI 338 (496)
T ss_dssp HHHHHHHHHHHCTTCCEEEEEECSHHHHHHHHHHTCSEEEECSSCCTTBCHHHHHCCCCCHHHHHHHHHHHHGGGTCCEE
T ss_pred HHHHHHHHHHHCCCceEEEcccCcHHHHHHHHHhCCCEEEECCCCCcCcccccccCCCccHHHHHHHHHHHhccCCCeEE
Confidence 457899999998 79999999999887 99999999998644422 13467889999999887632 69999
Q ss_pred EecCCCCHHHHHHHHHhCcCEEEecHHHHHHhhhc-------------------------C----------------H--
Q 017781 281 LDGGVRRGTDVFKALALGASGIFIGRPVVYSLAAE-------------------------G----------------E-- 317 (366)
Q Consensus 281 ~~GGI~~~~dv~kalalGAd~V~igr~~l~~l~~~-------------------------G----------------~-- 317 (366)
++|||+++.|+.|++++|||+|++|++|+....+. | +
T Consensus 339 a~GGI~~~~di~kala~GAd~V~iGs~f~~t~Espg~~~~~~g~~~k~~~gm~s~~a~~~~~~~r~~~~~~~~~~~~~eg 418 (496)
T 4fxs_A 339 ADGGIRFSGDISKAIAAGASCVMVGSMFAGTEEAPGEVILYQGRSYKAYRGMGSLGAMSKGSSDRYFQTDNAADKLVPEG 418 (496)
T ss_dssp EESCCCSHHHHHHHHHTTCSEEEESTTTTTBTTSSSCCEESSSCEEEEEECTTSHHHHHSSSCCSTTTC---CCCCCCSB
T ss_pred EeCCCCCHHHHHHHHHcCCCeEEecHHHhcCCCCCcceeeeCCeEeeeecccchHHHHhccccccccccccccccccCCc
Confidence 99999999999999999999999999985321110 0 0
Q ss_pred --------HHHHHHHHHHHHHHHHHHHHcCCCChhhhccc
Q 017781 318 --------KGVRRVLEMLREEFELAMALSGCRSLKEITRD 349 (366)
Q Consensus 318 --------~gv~~~~~~l~~el~~~m~~~G~~~l~el~~~ 349 (366)
..+.+++..|..+|+..|.++|+.+++||+..
T Consensus 419 ~~~~v~~~g~~~~~~~~~~~~l~~~~~~~g~~~i~~l~~~ 458 (496)
T 4fxs_A 419 IEGRIAYKGHLKEIIHQQMGGLRSCMGLTGSATVEDLRTK 458 (496)
T ss_dssp CEEEEECCBCHHHHHHHHHHHHHHHHHHHTCSBHHHHHHH
T ss_pred cEEeCCCCCCHHHHHHHHHHHHHHHHHhcCcCcHHHHHhC
Confidence 13779999999999999999999999999853
|
| >3tjx_A Dihydroorotate dehydrogenase; PYRD, dhodh, lmdhodh, oxidored mutation H174A; HET: FMN; 1.64A {Leishmania major} PDB: 3gz3_A* 3gye_A* 3tro_A* | Back alignment and structure |
|---|
Probab=99.85 E-value=5.6e-20 Score=179.51 Aligned_cols=242 Identities=16% Similarity=0.116 Sum_probs=152.0
Q ss_pred CCCCCccceeEcCcccCCceEecccccccccCChhhHHHHHHHHHcCCceec-CCCCCCC--------------------
Q 017781 55 DVSKIDMNTTVLGFKISMPIMIAPTAMQKMAHPEGEYATARAASAAGTIMTL-SSWSTSS-------------------- 113 (366)
Q Consensus 55 ~~~~vd~st~l~g~~l~~Pi~iApm~~~~l~~~~~e~~la~aa~~~G~~~~v-s~~~~~~-------------------- 113 (366)
...+.||+|+++|++|++||++|+=.+ +.+.+..++....|.++++ +|.+..+
T Consensus 31 g~~~~~L~v~~~Gl~f~NPvglAaG~~------~~~~e~~~~l~~~G~G~v~~~tvt~~pq~GNp~PR~~~l~~~~iN~~ 104 (354)
T 3tjx_A 31 GRGSMSLQVNLLNNTFANPFMNAAGVM------CTTTEELVAMTESASGSLVSKSCTPALREGNPTPRYQALPLGSINSM 104 (354)
T ss_dssp --CCCCCCEEETTEEESSSEEECTTSS------CSSHHHHHHHHHSSCSCEEEEEECSSCBCCSCSCCEEEETTEEEECC
T ss_pred CCCCCceeEEECCEEcCCCcEEccCCC------CCCHHHHHHHHHcCCCEEEeCCcCcccccCCCCCeEEEccccccccc
Confidence 346889999999999999999997212 3467788888999988774 3322211
Q ss_pred ------HH----HHhccC---CCceEEEeeecCCHHHHHHHHHHHHH---cCCCEEEEecCCCCCcchhHHHhhhcCCCC
Q 017781 114 ------VE----EVASTG---PGIRFFQLYVYKDRNVVAQLVRRAER---AGFKAIALTVDTPRLGRREADIKNRFTLPP 177 (366)
Q Consensus 114 ------~e----~i~~~~---~~~~~~Qly~~~d~~~~~~~l~ra~~---~G~~ai~vtvd~p~~g~r~~d~~~~~~~p~ 177 (366)
.+ .+.+.. ..+...++.. .+.+...+..+++.+ .+++++.||+.||.. |
T Consensus 105 G~~n~G~~~~~~~~~~~~~~~~~pvivsi~g-~~~~~~~~~~~~~~~~~~~~ad~ielNiScPn~-------------~- 169 (354)
T 3tjx_A 105 GLPNNGFDFYLAYAAEQHDYGKKPLFLSMSG-LSMRENVEMCKRLAAVATEKGVILELNLSCPNV-------------P- 169 (354)
T ss_dssp CCCBCCHHHHHHHHHHTCCTTTCCEEEEECC-SSHHHHHHHHHHHHHHHHHHCCEEEEECC-------------------
T ss_pred ccCCHHHHHHHHHHHHhhccCCceEEEEEec-CChHHHHHHHHHHHHhhhcCCCEEEeeeCCCCC-------------c-
Confidence 11 111111 1344555542 233333333333322 356666666666632 0
Q ss_pred ccccccccccccCCCccccchhhHHHhhhccCCCCCHHHHHHHHHhcCCCEEEEeccCHHH----------HH-cCCcEE
Q 017781 178 FLTLKNFQGLDLGKMDEANDSGLAAYVAGQIDRSLSWKDVKWLQTITKLPILVKGVLTAED----------VQ-AGAAGI 246 (366)
Q Consensus 178 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~i~~lr~~~~~pv~vK~v~~~~d----------~~-aGad~I 246 (366)
+... + +.+++...+.++++++.++.|+.+|......+ .+ .+++++
T Consensus 170 ---------------------g~~~-l--~~~~~~~~~i~~~v~~~~~~pv~vK~~p~~~~~~~~~~~~~~~~~~~~~~i 225 (354)
T 3tjx_A 170 ---------------------GKPQ-V--AYDFDAMRQCLTAVSEVYPHSFGVKMPPYFDFAAFDAAAEILNEFPKVQFI 225 (354)
T ss_dssp --------------------------C--TTSHHHHHHHHHHHHHHCCSCEEEEECCCCSHHHHHHHHHHHHTCTTEEEE
T ss_pred ---------------------chhh-h--ccCHHHHHHHHHHHHHHhhcccccccCCCCCchhHHHHHHHHHhhcccchh
Confidence 0000 0 01233345668899999999999998753221 23 345555
Q ss_pred EEcCCCcc-------------------CCCCCcchH----HHHHHHHHHcCCCceEEEecCCCCHHHHHHHHHhCcCEEE
Q 017781 247 IVSNHGAR-------------------QLDYVPATI----MALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIF 303 (366)
Q Consensus 247 ~vs~~gg~-------------------~~~~~~~~~----~~l~~i~~~~~~~i~vi~~GGI~~~~dv~kalalGAd~V~ 303 (366)
...|.... +..+|++.+ +.+.++++.+ .++|||++|||+|++|++++|.+|||+||
T Consensus 226 ~~i~t~~~~~~id~~~~~~~~~~~~~~GGlSG~~~~~~a~~~v~~~~~~~-~~~pIIg~GGI~s~~Da~e~i~aGAs~Vq 304 (354)
T 3tjx_A 226 TCINSIGNGLVIDAETESVVIKPKQGFGGLGGRYVLPTALANINAFYRRC-PGKLIFGCGGVYTGEDAFLHVLAGASMVQ 304 (354)
T ss_dssp EECCCEEEEECEETTTTEESCSGGGGEEEEEGGGGHHHHHHHHHHHHHHC-TTSEEEEESSCCSHHHHHHHHHHTEEEEE
T ss_pred heecccccccccccccccccccCcccccccCchhhHHHHHHHHHHHHHhc-CCCcEEEeCCcCCHHHHHHHHHcCCCEEE
Confidence 44332110 112344443 3455555554 37899999999999999999999999999
Q ss_pred ecHHHHHHhhhcCHHHHHHHHHHHHHHHHHHHHHcCCCChhhhcccc
Q 017781 304 IGRPVVYSLAAEGEKGVRRVLEMLREEFELAMALSGCRSLKEITRDH 350 (366)
Q Consensus 304 igr~~l~~l~~~G~~gv~~~~~~l~~el~~~m~~~G~~~l~el~~~~ 350 (366)
|||+++|. |+. ++..|++||+.+|+..|+++++|+++..
T Consensus 305 v~Ta~~y~----GP~----~~~~I~~~L~~~L~~~G~~si~e~~G~~ 343 (354)
T 3tjx_A 305 VGTALQEE----GPS----IFERLTSELLGVMAKKRYQTLDEFRGKV 343 (354)
T ss_dssp ECHHHHHH----CTT----HHHHHHHHHHHHHHHHTCCSGGGTTTCC
T ss_pred EChhhhhc----Cch----HHHHHHHHHHHHHHHcCCCCHHHHhChh
Confidence 99999884 664 6678899999999999999999999874
|
| >1vrd_A Inosine-5'-monophosphate dehydrogenase; TM1347, structural G joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.18A {Thermotoga maritima} SCOP: c.1.5.1 | Back alignment and structure |
|---|
Probab=99.84 E-value=7.7e-20 Score=185.96 Aligned_cols=138 Identities=25% Similarity=0.416 Sum_probs=114.6
Q ss_pred CCHHHHHHHHHhc-CCCEEEEeccCHHH----HHcCCcEEEEcCCCccC------CCCCcchHHHHHHHHHHcCC-CceE
Q 017781 212 LSWKDVKWLQTIT-KLPILVKGVLTAED----VQAGAAGIIVSNHGARQ------LDYVPATIMALEEVVKATQG-RIPV 279 (366)
Q Consensus 212 ~~~~~i~~lr~~~-~~pv~vK~v~~~~d----~~aGad~I~vs~~gg~~------~~~~~~~~~~l~~i~~~~~~-~i~v 279 (366)
..|+.++++|+.+ ++||+++++.+.++ .++|+|+|++++++|.. ..++.+++..+.++++.++. ++||
T Consensus 264 ~~~e~i~~i~~~~p~~pvi~g~~~t~e~a~~l~~~G~d~I~v~~~~G~~~~~~~~~~~g~p~~~~l~~v~~~~~~~~ipv 343 (494)
T 1vrd_A 264 RVIETLEMIKADYPDLPVVAGNVATPEGTEALIKAGADAVKVGVGPGSICTTRVVAGVGVPQLTAVMECSEVARKYDVPI 343 (494)
T ss_dssp HHHHHHHHHHHHCTTSCEEEEEECSHHHHHHHHHTTCSEEEECSSCSTTCHHHHHHCCCCCHHHHHHHHHHHHHTTTCCE
T ss_pred HHHHHHHHHHHHCCCceEEeCCcCCHHHHHHHHHcCCCEEEEcCCCCccccccccCCCCccHHHHHHHHHHHHhhcCCCE
Confidence 3678899999999 79999999999988 89999999999887631 12456788888888877543 7999
Q ss_pred EEecCCCCHHHHHHHHHhCcCEEEecHHHHH--------------------Hhhh-----cC--------------HHH-
Q 017781 280 FLDGGVRRGTDVFKALALGASGIFIGRPVVY--------------------SLAA-----EG--------------EKG- 319 (366)
Q Consensus 280 i~~GGI~~~~dv~kalalGAd~V~igr~~l~--------------------~l~~-----~G--------------~~g- 319 (366)
|++|||+++.|++|+|++|||+|++||+|+. ++++ .| ++|
T Consensus 344 ia~GGI~~~~di~kala~GAd~V~iGr~~l~~~e~~~~~~~~~~~~~k~~~g~~~~~a~~~g~~~~~~~~~~~~~~~~g~ 423 (494)
T 1vrd_A 344 IADGGIRYSGDIVKALAAGAESVMVGSIFAGTEEAPGETILYQGRKYKAYRGMGSLGAMRSGSADRYGQEGENKFVPEGI 423 (494)
T ss_dssp EEESCCCSHHHHHHHHHTTCSEEEESHHHHTBTTSSSEEEEETTEEEEECBCCC-------------------------C
T ss_pred EEECCcCCHHHHHHHHHcCCCEEEECHHHhcCCcCCcceEEECCEEEEEEeccchHHHHhhccccchhhcccccccCCcc
Confidence 9999999999999999999999999999972 2221 01 244
Q ss_pred ---------HHHHHHHHHHHHHHHHHHcCCCChhhhccc
Q 017781 320 ---------VRRVLEMLREEFELAMALSGCRSLKEITRD 349 (366)
Q Consensus 320 ---------v~~~~~~l~~el~~~m~~~G~~~l~el~~~ 349 (366)
+.++++.+..+|+..|.++|+.++.+|++.
T Consensus 424 ~~~~~~~~~v~~~~~~l~~~l~~~~~~~G~~~~~~l~~~ 462 (494)
T 1vrd_A 424 EGMVPYKGTVKDVVHQLVGGLRSGMGYIGARTIKELQEK 462 (494)
T ss_dssp BCCEECCBCHHHHHHHHHHHHHHHHHHHTCSSHHHHHHH
T ss_pred eEccCcCCCHHHHHHHHHHHHHHHhhhcCCCCHHHHHhh
Confidence 679999999999999999999999999865
|
| >3b0p_A TRNA-dihydrouridine synthase; TIM barrel, oxidoreductase; HET: FMN; 1.70A {Thermus thermophilus} PDB: 3b0u_X* 3b0v_C* | Back alignment and structure |
|---|
Probab=99.83 E-value=2e-19 Score=175.39 Aligned_cols=239 Identities=18% Similarity=0.212 Sum_probs=170.6
Q ss_pred cCCceEecccccccccCChhhHHHHHHHHHcCC-ceecCCCCCC------CHHHHhccCC--CceEEEeeecCCHHHHHH
Q 017781 70 ISMPIMIAPTAMQKMAHPEGEYATARAASAAGT-IMTLSSWSTS------SVEEVASTGP--GIRFFQLYVYKDRNVVAQ 140 (366)
Q Consensus 70 l~~Pi~iApm~~~~l~~~~~e~~la~aa~~~G~-~~~vs~~~~~------~~e~i~~~~~--~~~~~Qly~~~d~~~~~~ 140 (366)
+++||++|||++. .+..++..++++|. .++++++.+. ..+++.+..+ .+.++||+ ..+++...+
T Consensus 2 l~nriv~APM~g~------td~~~r~~~r~~Gg~gli~te~~~~~~~~~~~~~~~~~~~~~~~p~~vQL~-g~~p~~~~~ 74 (350)
T 3b0p_A 2 LDPRLSVAPMVDR------TDRHFRFLVRQVSLGVRLYTEMTVDQAVLRGNRERLLAFRPEEHPIALQLA-GSDPKSLAE 74 (350)
T ss_dssp CCCSEEECCCTTT------SSHHHHHHHHHHCSSSBEECCCEEHHHHHHSCHHHHHCCCGGGCSEEEEEE-CSCHHHHHH
T ss_pred CCCCEEECCCCCC------CHHHHHHHHHHcCCCCEEEeCCEEechhhcCCHHHHhccCCCCCeEEEEeC-CCCHHHHHH
Confidence 5789999999863 37788888999986 6777776432 1123444333 68999998 678899999
Q ss_pred HHHHHHHcCCCEEEEecCCCCCcchhHHHhhhcCCCCccccccccccccCCCccccchhhHHHhhhccCCCCCHHHHHHH
Q 017781 141 LVRRAERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLTLKNFQGLDLGKMDEANDSGLAAYVAGQIDRSLSWKDVKWL 220 (366)
Q Consensus 141 ~l~ra~~~G~~ai~vtvd~p~~g~r~~d~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~i~~l 220 (366)
.+++++++|++.|.|++.||..-.|. .++ +..++ .++.+..+.++++
T Consensus 75 aA~~a~~~G~D~IeIn~gcP~~~~~~----d~~---------------------------G~~l~--~~~~~~~eiv~av 121 (350)
T 3b0p_A 75 AARIGEAFGYDEINLNLGCPSEKAQE----GGY---------------------------GACLL--LDLARVREILKAM 121 (350)
T ss_dssp HHHHHHHTTCSEEEEEECCCSHHHHH----TTC---------------------------GGGGG--GCHHHHHHHHHHH
T ss_pred HHHHHHHcCCCEEEECCcCCCCcCcC----CCc---------------------------chhHH--hCHHHHHHHHHHH
Confidence 99999999999999999999641111 011 00111 2455677889999
Q ss_pred HHhcCCCEEEEeccCH------HH--------HHcCCcEEEEcCCCccC-C------CCCcchHHHHHHHHHHcCCCceE
Q 017781 221 QTITKLPILVKGVLTA------ED--------VQAGAAGIIVSNHGARQ-L------DYVPATIMALEEVVKATQGRIPV 279 (366)
Q Consensus 221 r~~~~~pv~vK~v~~~------~d--------~~aGad~I~vs~~gg~~-~------~~~~~~~~~l~~i~~~~~~~i~v 279 (366)
++.+++||++|...+. ++ .++|+|+|+|++....+ . ...+..++.+.++++.++ ++||
T Consensus 122 ~~~v~~PV~vKiR~g~~~~~~~~~~~~~a~~l~~aG~d~I~V~~r~~~~g~~g~~~~~~~~~~~~~i~~ik~~~~-~iPV 200 (350)
T 3b0p_A 122 GEAVRVPVTVKMRLGLEGKETYRGLAQSVEAMAEAGVKVFVVHARSALLALSTKANREIPPLRHDWVHRLKGDFP-QLTF 200 (350)
T ss_dssp HHHCSSCEEEEEESCBTTCCCHHHHHHHHHHHHHTTCCEEEEECSCBC----------CCCCCHHHHHHHHHHCT-TSEE
T ss_pred HHHhCCceEEEEecCcCccccHHHHHHHHHHHHHcCCCEEEEecCchhcccCcccccCCCcccHHHHHHHHHhCC-CCeE
Confidence 9999999999976422 12 89999999997642111 1 111346888889988773 6999
Q ss_pred EEecCCCCHHHHHHHHHhCcCEEEecHHHHHHhh--------hcC---HHHHHHHHHHHHHHHHHHHHHcCCCChhhhcc
Q 017781 280 FLDGGVRRGTDVFKALALGASGIFIGRPVVYSLA--------AEG---EKGVRRVLEMLREEFELAMALSGCRSLKEITR 348 (366)
Q Consensus 280 i~~GGI~~~~dv~kalalGAd~V~igr~~l~~l~--------~~G---~~gv~~~~~~l~~el~~~m~~~G~~~l~el~~ 348 (366)
|++|||++++|+.++++ |||+||+||+++.... ..| .....++++.+.+.++..+.. |. .+.++++
T Consensus 201 ianGgI~s~eda~~~l~-GaD~V~iGRa~l~~P~l~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~-g~-~~~~~~k 277 (350)
T 3b0p_A 201 VTNGGIRSLEEALFHLK-RVDGVMLGRAVYEDPFVLEEADRRVFGLPRRPSRLEVARRMRAYLEEEVLK-GT-PPWAVLR 277 (350)
T ss_dssp EEESSCCSHHHHHHHHT-TSSEEEECHHHHHCGGGGTTHHHHTTCCSCCCCHHHHHHHHHHHHHHHHHH-TC-CHHHHHT
T ss_pred EEECCcCCHHHHHHHHh-CCCEEEECHHHHhCcHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHHHHc-Cc-cHHHHHH
Confidence 99999999999999998 9999999999865311 112 113456777788888877774 65 6888887
Q ss_pred ccee
Q 017781 349 DHIV 352 (366)
Q Consensus 349 ~~l~ 352 (366)
..++
T Consensus 278 h~~~ 281 (350)
T 3b0p_A 278 HMLN 281 (350)
T ss_dssp TSTT
T ss_pred HHHH
Confidence 7654
|
| >1jcn_A Inosine monophosphate dehydrogenase I; IMPD, IMPDH, guanine nucleotide synthesis, oxidoreductase; HET: CPR; 2.50A {Homo sapiens} SCOP: c.1.5.1 d.37.1.1 PDB: 1jr1_A* 1nf7_A* 1b3o_A* 1nfb_A* | Back alignment and structure |
|---|
Probab=99.83 E-value=2.3e-19 Score=183.38 Aligned_cols=138 Identities=22% Similarity=0.347 Sum_probs=107.9
Q ss_pred CCCCHHHHHHHHHhc-CCCEEEEeccCHHH----HHcCCcEEEEcCCCccC------CCCCcc---hHHHHHHHHHHcCC
Q 017781 210 RSLSWKDVKWLQTIT-KLPILVKGVLTAED----VQAGAAGIIVSNHGARQ------LDYVPA---TIMALEEVVKATQG 275 (366)
Q Consensus 210 ~~~~~~~i~~lr~~~-~~pv~vK~v~~~~d----~~aGad~I~vs~~gg~~------~~~~~~---~~~~l~~i~~~~~~ 275 (366)
+...++.++++|+.+ ++||++|.+.+.++ .++|+|+|++++|+|.. .+++.+ .+..+.++++.+
T Consensus 280 ~~~~~~~i~~i~~~~~~~pvi~~~v~t~~~a~~l~~aGad~I~vg~~~G~~~~t~~~~~~g~~~~~~~~~~~~~~~~~-- 357 (514)
T 1jcn_A 280 SVYQIAMVHYIKQKYPHLQVIGGNVVTAAQAKNLIDAGVDGLRVGMGCGSICITQEVMACGRPQGTAVYKVAEYARRF-- 357 (514)
T ss_dssp SHHHHHHHHHHHHHCTTCEEEEEEECSHHHHHHHHHHTCSEEEECSSCSCCBTTBCCCSCCCCHHHHHHHHHHHHGGG--
T ss_pred chhHHHHHHHHHHhCCCCceEecccchHHHHHHHHHcCCCEEEECCCCCcccccccccCCCccchhHHHHHHHHHhhC--
Confidence 334578899999999 89999999999887 89999999997765421 123433 345556665555
Q ss_pred CceEEEecCCCCHHHHHHHHHhCcCEEEecHHHHHH--------------------hhh---------------------
Q 017781 276 RIPVFLDGGVRRGTDVFKALALGASGIFIGRPVVYS--------------------LAA--------------------- 314 (366)
Q Consensus 276 ~i~vi~~GGI~~~~dv~kalalGAd~V~igr~~l~~--------------------l~~--------------------- 314 (366)
++|||++|||+++.|+.|++++|||+|++||+|+.. +..
T Consensus 358 ~ipVia~GGI~~~~di~kala~GAd~V~iG~~~l~~~e~~~~~~~~~g~~~k~~~g~~s~~~~~~~~~~~~~~~~~~~~~ 437 (514)
T 1jcn_A 358 GVPIIADGGIQTVGHVVKALALGASTVMMGSLLAATTEAPGEYFFSDGVRLKKYRGMGSLDAMEKSSSSQKRYFSEGDKV 437 (514)
T ss_dssp TCCEEEESCCCSHHHHHHHHHTTCSEEEESTTTTTSTTSSCC--------------------------------------
T ss_pred CCCEEEECCCCCHHHHHHHHHcCCCeeeECHHHHcCCcCCcceEeECCEEEEEecCcCCHHHHhhccccchhhccccccc
Confidence 799999999999999999999999999999988641 110
Q ss_pred cCHHHH----------HHHHHHHHHHHHHHHHHcCCCChhhhccc
Q 017781 315 EGEKGV----------RRVLEMLREEFELAMALSGCRSLKEITRD 349 (366)
Q Consensus 315 ~G~~gv----------~~~~~~l~~el~~~m~~~G~~~l~el~~~ 349 (366)
.+++|| .++++.|..||+..|.++|+++++||++.
T Consensus 438 ~~~~gv~~~~~~~g~~~~~i~~l~~~l~~~m~~~G~~~i~~l~~~ 482 (514)
T 1jcn_A 438 KIAQGVSGSIQDKGSIQKFVPYLIAGIQHGCQDIGARSLSVLRSM 482 (514)
T ss_dssp ------------CCCHHHHHHHHHHHHHHHHHHHTCSBHHHHHHH
T ss_pred eecccceecCCCcccHHHHHHHHHHHHHHHHHhhCcccHHHHHhh
Confidence 023555 89999999999999999999999999874
|
| >1zfj_A Inosine monophosphate dehydrogenase; IMPDH, CBS domains, oxidoreductase; HET: IMP; 1.90A {Streptococcus pyogenes} SCOP: c.1.5.1 d.37.1.1 | Back alignment and structure |
|---|
Probab=99.83 E-value=1.7e-19 Score=183.22 Aligned_cols=138 Identities=15% Similarity=0.242 Sum_probs=114.6
Q ss_pred CCHHHHHHHHHhc-CCCEEEEeccCHHH----HHcCCcEEEEcCCCccC------CCCCcchHHHHHHHHHHcC-CCceE
Q 017781 212 LSWKDVKWLQTIT-KLPILVKGVLTAED----VQAGAAGIIVSNHGARQ------LDYVPATIMALEEVVKATQ-GRIPV 279 (366)
Q Consensus 212 ~~~~~i~~lr~~~-~~pv~vK~v~~~~d----~~aGad~I~vs~~gg~~------~~~~~~~~~~l~~i~~~~~-~~i~v 279 (366)
..|+.++++++.+ ++|++.+++.+.++ .++|+|+|.+++.+|.. ..++.++++.+.+++.... .++||
T Consensus 260 ~~~~~i~~l~~~~p~~pvi~G~v~t~~~a~~~~~~Gad~I~vg~g~g~~~~tr~~~~~~~p~~~~l~~~~~~~~~~~ipv 339 (491)
T 1zfj_A 260 GVLRKIAEIRAHFPNRTLIAGNIATAEGARALYDAGVDVVKVGIGPGSICTTRVVAGVGVPQVTAIYDAAAVAREYGKTI 339 (491)
T ss_dssp HHHHHHHHHHHHCSSSCEEEEEECSHHHHHHHHHTTCSEEEECSSCCTTBCHHHHTCCCCCHHHHHHHHHHHHHHTTCEE
T ss_pred hHHHHHHHHHHHCCCCcEeCCCccCHHHHHHHHHcCCCEEEECccCCcceEEeeecCCCCCcHHHHHHHHHHHhhcCCCE
Confidence 3578899999999 89999999998877 89999999998765542 2346678888888887543 37999
Q ss_pred EEecCCCCHHHHHHHHHhCcCEEEecHHHHH--------------------HhhhcC----------------------H
Q 017781 280 FLDGGVRRGTDVFKALALGASGIFIGRPVVY--------------------SLAAEG----------------------E 317 (366)
Q Consensus 280 i~~GGI~~~~dv~kalalGAd~V~igr~~l~--------------------~l~~~G----------------------~ 317 (366)
|++|||+++.|++|++++|||+|++|++|+. +++..+ +
T Consensus 340 ia~GGi~~~~di~kal~~GA~~v~vG~~~~~~~e~~~~~~~~~g~~~k~~~g~~~~~a~~~~~~~~~~~g~~~~~~~~~~ 419 (491)
T 1zfj_A 340 IADGGIKYSGDIVKALAAGGNAVMLGSMFAGTDEAPGETEIYQGRKYKTYRGMGSIAAMKKGSSDRYFQGSVNEANKLVP 419 (491)
T ss_dssp EEESCCCSHHHHHHHHHTTCSEEEESTTTTTBSSCCCCEEEETTEEEEEEECTTSHHHHCC--------------CCCCC
T ss_pred EeeCCCCCHHHHHHHHHcCCcceeeCHHhhCCCcCcceEEEECCEEEEEEecccCHHHHhccccccccccccccccccCc
Confidence 9999999999999999999999999999972 111101 2
Q ss_pred HH----------HHHHHHHHHHHHHHHHHHcCCCChhhhccc
Q 017781 318 KG----------VRRVLEMLREEFELAMALSGCRSLKEITRD 349 (366)
Q Consensus 318 ~g----------v~~~~~~l~~el~~~m~~~G~~~l~el~~~ 349 (366)
+| +..+++.|..||+..|.++|+.++.+|+..
T Consensus 420 ~g~~~~~~~~~~~~~~~~~l~~~l~~~~~~~G~~~~~~l~~~ 461 (491)
T 1zfj_A 420 EGIEGRVAYKGAASDIVFQMLGGIRSGMGYVGAGDIQELHEN 461 (491)
T ss_dssp SBCEEEEECCBCHHHHHHHHHHHHHHHHHHTTCSSHHHHHHH
T ss_pred CcceEecCcCCCHHHHHHHHHHHHHHHhhhcCcccHHHHHhc
Confidence 33 899999999999999999999999999865
|
| >2cu0_A Inosine-5'-monophosphate dehydrogenase; structural genomics, pyrococcus horikoshii OT3, riken structural genomics/PROT initiative, RSGI; HET: XMP; 2.10A {Pyrococcus horikoshii} SCOP: c.1.5.1 | Back alignment and structure |
|---|
Probab=99.81 E-value=4.5e-19 Score=179.98 Aligned_cols=134 Identities=24% Similarity=0.359 Sum_probs=106.8
Q ss_pred HHHHHHHHHhcCCCEEEEeccCHHH---HHcCCcEEEEcCCCccC-------CCCCcchHHHHHHHHHHcCC-CceEEEe
Q 017781 214 WKDVKWLQTITKLPILVKGVLTAED---VQAGAAGIIVSNHGARQ-------LDYVPATIMALEEVVKATQG-RIPVFLD 282 (366)
Q Consensus 214 ~~~i~~lr~~~~~pv~vK~v~~~~d---~~aGad~I~vs~~gg~~-------~~~~~~~~~~l~~i~~~~~~-~i~vi~~ 282 (366)
++.++++++.+++|+++|++.+.++ .. |+|+|.+ +.|+.. ..+|.+++..+.++.+.... ++|||++
T Consensus 257 L~~I~~l~~~~~vpvi~k~v~~~~~a~~l~-G~d~v~v-g~g~g~~~~~r~~~~~g~~~~~~l~~~~~~~~~~~vpVia~ 334 (486)
T 2cu0_A 257 IKSMKEMRQKVDADFIVGNIANPKAVDDLT-FADAVKV-GIGPGSICTTRIVAGVGVPQITAVAMVADRAQEYGLYVIAD 334 (486)
T ss_dssp HHHHHHHHHTCCSEEEEEEECCHHHHTTCT-TSSEEEE-CSSCSTTBCHHHHTCCCCCHHHHHHHHHHHHHHHTCEEEEE
T ss_pred hhHHHHHHHHhCCccccCCcCCHHHHHHhh-CCCeEEE-eeeeccceeeeEEeecCcchHHHHHHHHHHHHHcCCcEEec
Confidence 4568999999999999999999887 44 9999999 544322 24566666666665544321 6999999
Q ss_pred cCCCCHHHHHHHHHhCcCEEEecHHHHH--------------------HhhhcC----------------------HHH-
Q 017781 283 GGVRRGTDVFKALALGASGIFIGRPVVY--------------------SLAAEG----------------------EKG- 319 (366)
Q Consensus 283 GGI~~~~dv~kalalGAd~V~igr~~l~--------------------~l~~~G----------------------~~g- 319 (366)
|||+++.|++|||++|||+|++|++|+. +++..| ++|
T Consensus 335 GGi~~~~di~kalalGA~~v~~g~~~~~~~e~~~~~~~~~g~~~k~~~g~~~~~a~~~~~~~r~~~g~~~~~~~~~~~g~ 414 (486)
T 2cu0_A 335 GGIRYSGDIVKAIAAGADAVMLGNLLAGTKEAPGKEVIINGRKYKQYRGMGSLGAMMKGGAERYYQGGYMKTRKFVPEGV 414 (486)
T ss_dssp SCCCSHHHHHHHHHTTCSEEEESTTTTTBTTCCSCEEEETTEEEEEEECTTSHHHHTC----------CCCCSCSSCCBC
T ss_pred CCCCCHHHHHHHHHcCCCceeeChhhhcCccCchhheeeCCcEEEEeecCCCHHHHhcccccccccccccccccccccce
Confidence 9999999999999999999999999983 221111 233
Q ss_pred ---------HHHHHHHHHHHHHHHHHHcCCCChhhhccc
Q 017781 320 ---------VRRVLEMLREEFELAMALSGCRSLKEITRD 349 (366)
Q Consensus 320 ---------v~~~~~~l~~el~~~m~~~G~~~l~el~~~ 349 (366)
+..+++.|..+|+..|.++|+.++.+|+..
T Consensus 415 ~~~~~~~~~~~~~~~~l~~~lr~~m~~~G~~~~~~l~~~ 453 (486)
T 2cu0_A 415 EGVVPYRGTVSEVLYQLVGGLKAGMGYVGARNIRELKEK 453 (486)
T ss_dssp EEEEECCBCHHHHHHHHHHHHHHHHHHTTCSBHHHHHHH
T ss_pred EEeecccCCHHHHHHHHHHHHHHhcccCCcCCHHHHHhh
Confidence 889999999999999999999999999854
|
| >2gjl_A Hypothetical protein PA1024; 2-nitropropane dioxygenase, 2-nitropropane, FMN, oxidoreduct; HET: FMN; 2.00A {Pseudomonas aeruginosa PAO1} PDB: 2gjn_A* | Back alignment and structure |
|---|
Probab=99.71 E-value=8.8e-16 Score=148.16 Aligned_cols=193 Identities=18% Similarity=0.234 Sum_probs=137.5
Q ss_pred eEcCcccCCceEecccccccccCChhhHHHHHHHHHcCCceecCCCCCCCHHHH-------hccCCCceEEEeeecC---
Q 017781 64 TVLGFKISMPIMIAPTAMQKMAHPEGEYATARAASAAGTIMTLSSWSTSSVEEV-------ASTGPGIRFFQLYVYK--- 133 (366)
Q Consensus 64 ~l~g~~l~~Pi~iApm~~~~l~~~~~e~~la~aa~~~G~~~~vs~~~~~~~e~i-------~~~~~~~~~~Qly~~~--- 133 (366)
++++ +..||+.|||++.+ +.+++.++.+.|...++......+.+++ ++....|+.++++...
T Consensus 10 ~~l~--~~~Pii~apM~gvs------~~~la~av~~aGglG~i~~~~~~s~~~l~~~i~~i~~~~~~p~~v~l~v~~~~~ 81 (328)
T 2gjl_A 10 ETFG--VEHPIMQGGMQWVG------RAEMAAAVANAGGLATLSALTQPSPEALAAEIARCRELTDRPFGVNLTLLPTQK 81 (328)
T ss_dssp HHHT--CSSSEEECCCTTTC------SHHHHHHHHHTTSBCEEETTTSSSHHHHHHHHHHHHHHCSSCCEEEEEECCCSS
T ss_pred HHhC--CCCCEEECCCCCCC------cHHHHHHHHHCCCeEEeCCCCCCCHHHHHHHHHHHHHhcCCCeEEEEecccccc
Confidence 3454 46899999997533 5689999999997666643322224433 2223357788888741
Q ss_pred CHHHHHHHHHHHHHcCCCEEEEecCCCCCcchhHHHhhhcCCCCccccccccccccCCCccccchhhHHHhhhccCCCCC
Q 017781 134 DRNVVAQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLTLKNFQGLDLGKMDEANDSGLAAYVAGQIDRSLS 213 (366)
Q Consensus 134 d~~~~~~~l~ra~~~G~~ai~vtvd~p~~g~r~~d~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~ 213 (366)
+++ ..+.++.+.+.|++.+.++.++|
T Consensus 82 ~~~-~~~~~~~~~~~g~d~V~~~~g~p----------------------------------------------------- 107 (328)
T 2gjl_A 82 PVP-YAEYRAAIIEAGIRVVETAGNDP----------------------------------------------------- 107 (328)
T ss_dssp CCC-HHHHHHHHHHTTCCEEEEEESCC-----------------------------------------------------
T ss_pred Ccc-HHHHHHHHHhcCCCEEEEcCCCc-----------------------------------------------------
Confidence 122 45677888889999887654321
Q ss_pred HHHHHHHHHhcCCCEEEEeccCHHH----HHcCCcEEEEcCC--CccCCCCCcchHHHHHHHHHHcCCCceEEEecCCCC
Q 017781 214 WKDVKWLQTITKLPILVKGVLTAED----VQAGAAGIIVSNH--GARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRR 287 (366)
Q Consensus 214 ~~~i~~lr~~~~~pv~vK~v~~~~d----~~aGad~I~vs~~--gg~~~~~~~~~~~~l~~i~~~~~~~i~vi~~GGI~~ 287 (366)
++.++++++. ++|++.+ +.+.++ .++|+|+|++++. ||+......++++.++++++.+ ++|||++|||++
T Consensus 108 ~~~~~~l~~~-gi~vi~~-v~t~~~a~~~~~~GaD~i~v~g~~~GG~~G~~~~~~~~~l~~v~~~~--~iPviaaGGI~~ 183 (328)
T 2gjl_A 108 GEHIAEFRRH-GVKVIHK-CTAVRHALKAERLGVDAVSIDGFECAGHPGEDDIPGLVLLPAAANRL--RVPIIASGGFAD 183 (328)
T ss_dssp HHHHHHHHHT-TCEEEEE-ESSHHHHHHHHHTTCSEEEEECTTCSBCCCSSCCCHHHHHHHHHTTC--CSCEEEESSCCS
T ss_pred HHHHHHHHHc-CCCEEee-CCCHHHHHHHHHcCCCEEEEECCCCCcCCCCccccHHHHHHHHHHhc--CCCEEEECCCCC
Confidence 3456777775 7888765 567666 8899999999763 3432212357889999998877 799999999999
Q ss_pred HHHHHHHHHhCcCEEEecHHHHHHhhhcCHHHHHH
Q 017781 288 GTDVFKALALGASGIFIGRPVVYSLAAEGEKGVRR 322 (366)
Q Consensus 288 ~~dv~kalalGAd~V~igr~~l~~l~~~G~~gv~~ 322 (366)
++|+.+++++|||+|++||+|+....+.+.+.+.+
T Consensus 184 ~~~v~~al~~GAdgV~vGs~~~~~~e~~~~~~~k~ 218 (328)
T 2gjl_A 184 GRGLVAALALGADAINMGTRFLATRECPIHPAVKA 218 (328)
T ss_dssp HHHHHHHHHHTCSEEEESHHHHTSSSSCSCHHHHH
T ss_pred HHHHHHHHHcCCCEEEECHHHHcCccccccHHHHH
Confidence 99999999999999999999988755545444433
|
| >2z6i_A Trans-2-enoyl-ACP reductase II; fatty acid synthesis, antibiotics, oxidoreductase, flavoprotein; HET: FMN; 1.70A {Streptococcus pneumoniae} PDB: 2z6j_A* | Back alignment and structure |
|---|
Probab=99.70 E-value=5.6e-16 Score=149.88 Aligned_cols=179 Identities=20% Similarity=0.234 Sum_probs=130.9
Q ss_pred cCCceEecccccccccCChhhHHHHHHHHHcCCceecCCCCCCCHHHH-------hccCCCceEEEeeecCCHHHHHHHH
Q 017781 70 ISMPIMIAPTAMQKMAHPEGEYATARAASAAGTIMTLSSWSTSSVEEV-------ASTGPGIRFFQLYVYKDRNVVAQLV 142 (366)
Q Consensus 70 l~~Pi~iApm~~~~l~~~~~e~~la~aa~~~G~~~~vs~~~~~~~e~i-------~~~~~~~~~~Qly~~~d~~~~~~~l 142 (366)
+.+||+.|||++.+ +.+++.++.+.|...++... ..+.+++ .+....++.+|++.. +++ ..+.+
T Consensus 11 ~~~Pii~apM~g~s------~~~la~av~~aG~lG~i~~~-~~~~~~~~~~i~~i~~~~~~p~gvnl~~~-~~~-~~~~~ 81 (332)
T 2z6i_A 11 IDYPIFQGGMAWVA------DGDLAGAVSKAGGLGIIGGG-NAPKEVVKANIDKIKSLTDKPFGVNIMLL-SPF-VEDIV 81 (332)
T ss_dssp CSSSEEECCCTTTC------CHHHHHHHHHHTSBEEEECT-TCCHHHHHHHHHHHHHHCCSCEEEEECTT-STT-HHHHH
T ss_pred CCCCEEeCCCCCCC------cHHHHHHHHhCCCcEEeCCC-CCCHHHHHHHHHHHHHhcCCCEEEEecCC-CCC-HHHHH
Confidence 67999999998532 56799999999975455322 2334432 222335788998853 222 45678
Q ss_pred HHHHHcCCCEEEEecCCCCCcchhHHHhhhcCCCCccccccccccccCCCccccchhhHHHhhhccCCCCCHHHHHHHHH
Q 017781 143 RRAERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLTLKNFQGLDLGKMDEANDSGLAAYVAGQIDRSLSWKDVKWLQT 222 (366)
Q Consensus 143 ~ra~~~G~~ai~vtvd~p~~g~r~~d~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~i~~lr~ 222 (366)
+++.++|++.+.++.++| .+.++++|+
T Consensus 82 ~~a~~~g~d~V~~~~g~p-----------------------------------------------------~~~i~~l~~ 108 (332)
T 2z6i_A 82 DLVIEEGVKVVTTGAGNP-----------------------------------------------------SKYMERFHE 108 (332)
T ss_dssp HHHHHTTCSEEEECSSCG-----------------------------------------------------GGTHHHHHH
T ss_pred HHHHHCCCCEEEECCCCh-----------------------------------------------------HHHHHHHHH
Confidence 888999999988765432 113556666
Q ss_pred hcCCCEEEEeccCHHH----HHcCCcEEEEcCC--CccCCCCCcchHHHHHHHHHHcCCCceEEEecCCCCHHHHHHHHH
Q 017781 223 ITKLPILVKGVLTAED----VQAGAAGIIVSNH--GARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALA 296 (366)
Q Consensus 223 ~~~~pv~vK~v~~~~d----~~aGad~I~vs~~--gg~~~~~~~~~~~~l~~i~~~~~~~i~vi~~GGI~~~~dv~kala 296 (366)
.++|+++|. .+.++ .++|+|+|++++. ||+. +..++++.++++++.+ ++|||++|||.+++++.++++
T Consensus 109 -~g~~v~~~v-~~~~~a~~~~~~GaD~i~v~g~~~GG~~--g~~~~~~ll~~i~~~~--~iPViaaGGI~~~~~~~~al~ 182 (332)
T 2z6i_A 109 -AGIIVIPVV-PSVALAKRMEKIGADAVIAEGMEAGGHI--GKLTTMTLVRQVATAI--SIPVIAAGGIADGEGAAAGFM 182 (332)
T ss_dssp -TTCEEEEEE-SSHHHHHHHHHTTCSCEEEECTTSSEEC--CSSCHHHHHHHHHHHC--SSCEEEESSCCSHHHHHHHHH
T ss_pred -cCCeEEEEe-CCHHHHHHHHHcCCCEEEEECCCCCCCC--CCccHHHHHHHHHHhc--CCCEEEECCCCCHHHHHHHHH
Confidence 488999885 55555 8899999999764 4432 2356889999999888 799999999999999999999
Q ss_pred hCcCEEEecHHHHHHhhhcC
Q 017781 297 LGASGIFIGRPVVYSLAAEG 316 (366)
Q Consensus 297 lGAd~V~igr~~l~~l~~~G 316 (366)
+|||+|++||+|+....+..
T Consensus 183 ~GAdgV~vGs~~l~~~e~~~ 202 (332)
T 2z6i_A 183 LGAEAVQVGTRFVVAKESNA 202 (332)
T ss_dssp TTCSEEEECHHHHTBTTCCS
T ss_pred cCCCEEEecHHHhcCccccc
Confidence 99999999999987654433
|
| >3bo9_A Putative nitroalkan dioxygenase; TM0800, structural genomics center for structural genomics, JCSG, protein structure INI PSI-2; HET: MSE 2PE; 2.71A {Thermotoga maritima MSB8} | Back alignment and structure |
|---|
Probab=99.70 E-value=1.5e-15 Score=146.59 Aligned_cols=186 Identities=20% Similarity=0.259 Sum_probs=134.1
Q ss_pred cccCCceEecccccccccCChhhHHHHHHHHHcCCceecCCCCCCCHHHH-------hccCCCceEEEeeecCCHHHHHH
Q 017781 68 FKISMPIMIAPTAMQKMAHPEGEYATARAASAAGTIMTLSSWSTSSVEEV-------ASTGPGIRFFQLYVYKDRNVVAQ 140 (366)
Q Consensus 68 ~~l~~Pi~iApm~~~~l~~~~~e~~la~aa~~~G~~~~vs~~~~~~~e~i-------~~~~~~~~~~Qly~~~d~~~~~~ 140 (366)
..+..||+.|||++.+ +..++.++.+.|...+++.. ..+.+++ .+....++.+++... ++. ..+
T Consensus 23 l~~~~Pii~apM~gvs------~~~la~av~~aGglG~i~~~-~~~~~~l~~~i~~i~~~~~~p~gVnl~~~-~~~-~~~ 93 (326)
T 3bo9_A 23 LEIEHPILMGGMAWAG------TPTLAAAVSEAGGLGIIGSG-AMKPDDLRKAISELRQKTDKPFGVNIILV-SPW-ADD 93 (326)
T ss_dssp HTCSSSEEECCCTTTS------CHHHHHHHHHTTSBEEEECT-TCCHHHHHHHHHHHHTTCSSCEEEEEETT-STT-HHH
T ss_pred cCCCCCEEECCCCCCC------CHHHHHHHHhCCCcEEeCCC-CCCHHHHHHHHHHHHHhcCCCEEEEEecc-CCC-HHH
Confidence 4567999999998643 66899999999976666432 2344433 222224677887652 222 356
Q ss_pred HHHHHHHcCCCEEEEecCCCCCcchhHHHhhhcCCCCccccccccccccCCCccccchhhHHHhhhccCCCCCHHHHHHH
Q 017781 141 LVRRAERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLTLKNFQGLDLGKMDEANDSGLAAYVAGQIDRSLSWKDVKWL 220 (366)
Q Consensus 141 ~l~ra~~~G~~ai~vtvd~p~~g~r~~d~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~i~~l 220 (366)
.++.+.+.|++.+.++.++| .+.++++
T Consensus 94 ~~~~~~~~g~d~V~l~~g~p-----------------------------------------------------~~~~~~l 120 (326)
T 3bo9_A 94 LVKVCIEEKVPVVTFGAGNP-----------------------------------------------------TKYIREL 120 (326)
T ss_dssp HHHHHHHTTCSEEEEESSCC-----------------------------------------------------HHHHHHH
T ss_pred HHHHHHHCCCCEEEECCCCc-----------------------------------------------------HHHHHHH
Confidence 77788889999887754432 1245666
Q ss_pred HHhcCCCEEEEeccCHHH----HHcCCcEEEEcC--CCccCCCCCcchHHHHHHHHHHcCCCceEEEecCCCCHHHHHHH
Q 017781 221 QTITKLPILVKGVLTAED----VQAGAAGIIVSN--HGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKA 294 (366)
Q Consensus 221 r~~~~~pv~vK~v~~~~d----~~aGad~I~vs~--~gg~~~~~~~~~~~~l~~i~~~~~~~i~vi~~GGI~~~~dv~ka 294 (366)
++ .++|++++ +.+.++ .++|+|+|++++ +||++ +..++++.++++++.+ ++|||++|||++++|+.++
T Consensus 121 ~~-~g~~v~~~-v~s~~~a~~a~~~GaD~i~v~g~~~GG~~--G~~~~~~ll~~i~~~~--~iPviaaGGI~~~~dv~~a 194 (326)
T 3bo9_A 121 KE-NGTKVIPV-VASDSLARMVERAGADAVIAEGMESGGHI--GEVTTFVLVNKVSRSV--NIPVIAAGGIADGRGMAAA 194 (326)
T ss_dssp HH-TTCEEEEE-ESSHHHHHHHHHTTCSCEEEECTTSSEEC--CSSCHHHHHHHHHHHC--SSCEEEESSCCSHHHHHHH
T ss_pred HH-cCCcEEEE-cCCHHHHHHHHHcCCCEEEEECCCCCccC--CCccHHHHHHHHHHHc--CCCEEEECCCCCHHHHHHH
Confidence 65 36777654 566666 889999999987 45543 2357889999999887 7999999999999999999
Q ss_pred HHhCcCEEEecHHHHHHhhhcCHHHHH
Q 017781 295 LALGASGIFIGRPVVYSLAAEGEKGVR 321 (366)
Q Consensus 295 lalGAd~V~igr~~l~~l~~~G~~gv~ 321 (366)
+++||++|++||+|+.+..+.+.+++.
T Consensus 195 l~~GA~gV~vGs~~~~~~e~~~~~~~k 221 (326)
T 3bo9_A 195 FALGAEAVQMGTRFVASVESDVHPVYK 221 (326)
T ss_dssp HHHTCSEEEESHHHHTBSSCCSCHHHH
T ss_pred HHhCCCEEEechHHHcCccccccHHHH
Confidence 999999999999998765554444433
|
| >3bw2_A 2-nitropropane dioxygenase; TIM barrel, oxidoreductase; HET: FMN; 2.10A {Streptomyces ansochromogenes} PDB: 3bw4_A* 3bw3_A* | Back alignment and structure |
|---|
Probab=99.65 E-value=9e-15 Score=143.36 Aligned_cols=201 Identities=22% Similarity=0.203 Sum_probs=125.0
Q ss_pred CCceEeccccc-ccccCChhhHHHHHHHHHcCCceecCCCCCCCHHHHh-------ccCCCceEEEeeecCCH----HHH
Q 017781 71 SMPIMIAPTAM-QKMAHPEGEYATARAASAAGTIMTLSSWSTSSVEEVA-------STGPGIRFFQLYVYKDR----NVV 138 (366)
Q Consensus 71 ~~Pi~iApm~~-~~l~~~~~e~~la~aa~~~G~~~~vs~~~~~~~e~i~-------~~~~~~~~~Qly~~~d~----~~~ 138 (366)
..||+.|||++ .+ +.+++.++.++|...+++.. ..+.+++. +..+.|+.+|++...+. +..
T Consensus 10 ~~Pii~apMaggvs------~~~la~av~~aGglG~i~~~-~~s~~~l~~~i~~~~~~~~~p~gVnl~~~~~~~~~~~~~ 82 (369)
T 3bw2_A 10 PLPIVQAPMAGGVS------VPQLAAAVCEAGGLGFLAAG-YKTADGMYQEIKRLRGLTGRPFGVNVFMPQPELAESGAV 82 (369)
T ss_dssp SSSEEECCCTTTTS------CHHHHHHHHHTTSBEEEECT-TSCHHHHHHHHHHHHHHCCSCEEEEEECCCCCC---CHH
T ss_pred cCCEEeCCCCCCCC------cHHHHHHHHHCCCEEEcCCC-CCCHHHHHHHHHHHHHhCCCCeEEEEecCCCCcccHHHH
Confidence 79999999975 32 66899999999987777542 34444432 22335778888764331 122
Q ss_pred HH----HHHHHHHcCCCEEEEecCCCCCcc--hhHHH---hhhcCCCCccccccccccccCCCccccchhhHHHhhhccC
Q 017781 139 AQ----LVRRAERAGFKAIALTVDTPRLGR--READI---KNRFTLPPFLTLKNFQGLDLGKMDEANDSGLAAYVAGQID 209 (366)
Q Consensus 139 ~~----~l~ra~~~G~~ai~vtvd~p~~g~--r~~d~---~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d 209 (366)
.+ +...+++.|.. ++.|.... +..+. ......+ .+.- ..
T Consensus 83 ~~~~~~l~~~~~~~g~~-----~~~~~~~~~~~~~~~~~~~~~~g~~--------------------------~V~~-~~ 130 (369)
T 3bw2_A 83 EVYAHQLAGEAAWYETE-----LGDPDGGRDDGYDAKLAVLLDDPVP--------------------------VVSF-HF 130 (369)
T ss_dssp HHHHHHTHHHHHHTTCC-----CCCSCSCSSTTHHHHHHHHHHSCCS--------------------------EEEE-ES
T ss_pred HHHHHHHHHHHHHcCCC-----cCcccccccccHHHHHHHHHhcCCC--------------------------EEEE-eC
Confidence 22 22333444433 22222110 00110 0000000 0000 00
Q ss_pred CCCCHHHHHHHHHhcCCCEEEEeccCHHH----HHcCCcEEEEcCC--Ccc---CCCC----C--cchHHHHHHHHHHcC
Q 017781 210 RSLSWKDVKWLQTITKLPILVKGVLTAED----VQAGAAGIIVSNH--GAR---QLDY----V--PATIMALEEVVKATQ 274 (366)
Q Consensus 210 ~~~~~~~i~~lr~~~~~pv~vK~v~~~~d----~~aGad~I~vs~~--gg~---~~~~----~--~~~~~~l~~i~~~~~ 274 (366)
....++.++++++ .++|++++ +.+.++ .++|+|+|++++. ||+ .... + .+.++.++++++.+
T Consensus 131 g~~~~~~i~~~~~-~g~~v~~~-v~t~~~a~~a~~~GaD~i~v~g~~~GGh~g~~~~~~~~~~~~~~~~~~l~~i~~~~- 207 (369)
T 3bw2_A 131 GVPDREVIARLRR-AGTLTLVT-ATTPEEARAVEAAGADAVIAQGVEAGGHQGTHRDSSEDDGAGIGLLSLLAQVREAV- 207 (369)
T ss_dssp SCCCHHHHHHHHH-TTCEEEEE-ESSHHHHHHHHHTTCSEEEEECTTCSEECCCSSCCGGGTTCCCCHHHHHHHHHHHC-
T ss_pred CCCcHHHHHHHHH-CCCeEEEE-CCCHHHHHHHHHcCCCEEEEeCCCcCCcCCCcccccccccccccHHHHHHHHHHhc-
Confidence 1124778899888 47777665 567766 8899999999763 332 2111 1 34588899998877
Q ss_pred CCceEEEecCCCCHHHHHHHHHhCcCEEEecHHHHHHhhh
Q 017781 275 GRIPVFLDGGVRRGTDVFKALALGASGIFIGRPVVYSLAA 314 (366)
Q Consensus 275 ~~i~vi~~GGI~~~~dv~kalalGAd~V~igr~~l~~l~~ 314 (366)
++|||++|||++++++.+++++|||+|++||+|+....+
T Consensus 208 -~iPViaaGGI~~~~~~~~~l~~GAd~V~vGs~~~~~~e~ 246 (369)
T 3bw2_A 208 -DIPVVAAGGIMRGGQIAAVLAAGADAAQLGTAFLATDES 246 (369)
T ss_dssp -SSCEEEESSCCSHHHHHHHHHTTCSEEEESHHHHTSTTC
T ss_pred -CceEEEECCCCCHHHHHHHHHcCCCEEEEChHHhCCccc
Confidence 899999999999999999999999999999999865433
|
| >1z41_A YQJM, probable NADH-dependent flavin oxidoreductase YQJ; FMN, beta-alpha-barrel; HET: FMN; 1.30A {Bacillus subtilis} SCOP: c.1.4.1 PDB: 1z42_A* 1z44_A* 1z48_A* | Back alignment and structure |
|---|
Probab=99.59 E-value=4.6e-14 Score=136.79 Aligned_cols=222 Identities=18% Similarity=0.198 Sum_probs=141.0
Q ss_pred eeEcCcccCCceEecccccccccCChh---hH--HHHHHHHHcCCceecCCCCCC--------------CHH------HH
Q 017781 63 TTVLGFKISMPIMIAPTAMQKMAHPEG---EY--ATARAASAAGTIMTLSSWSTS--------------SVE------EV 117 (366)
Q Consensus 63 t~l~g~~l~~Pi~iApm~~~~l~~~~~---e~--~la~aa~~~G~~~~vs~~~~~--------------~~e------~i 117 (366)
.+|.+.+++++|++|||+...-..+++ +. ..-+.-++.|++++++++.+. +.+ ++
T Consensus 9 ~~ig~~~l~NRiv~aPm~~~~~~~~~g~~~~~~~~~y~~rA~gG~gliite~~~v~~~g~~~~~~~~i~~d~~~~~~~~~ 88 (338)
T 1z41_A 9 ITIKDMTLKNRIVMSPMCMYSSHEKDGKLTPFHMAHYISRAIGQVGLIIVEASAVNPQGRITDQDLGIWSDEHIEGFAKL 88 (338)
T ss_dssp EEETTEEESSSEEECCCCCCCCTTSSSCCCHHHHHHHHHHHHTTCSEEEEEEEESSGGGCSSTTSCBCSSTHHHHHHHHH
T ss_pred eeECCEEEcCccEECCcCCCcCCCCCCCCCHHHHHHHHHHHcCCCCEEEeCCeeccccccCCCCCcccCCHHHHHHHHHH
Confidence 578899999999999997654210222 22 222222246788877554211 112 22
Q ss_pred hc---cCCCceEEEeeec----------------------CCH------------HHHHHHHHHHHHcCCCEEEEecCCC
Q 017781 118 AS---TGPGIRFFQLYVY----------------------KDR------------NVVAQLVRRAERAGFKAIALTVDTP 160 (366)
Q Consensus 118 ~~---~~~~~~~~Qly~~----------------------~d~------------~~~~~~l~ra~~~G~~ai~vtvd~p 160 (366)
.+ ....+.++||+-. ..+ +...+..++++++|++++.|+..|.
T Consensus 89 ~~~vh~~g~~i~~QL~h~Gr~~~~~~~~~~pS~~~~~~~~~~p~~mt~~eI~~~i~~~~~aA~~a~~aGfDgVeih~~~g 168 (338)
T 1z41_A 89 TEQVKEQGSKIGIQLAHAGRKAELEGDIFAPSAIAFDEQSATPVEMSAEKVKETVQEFKQAAARAKEAGFDVIEIHAAHG 168 (338)
T ss_dssp HHHHHHTTCEEEEEEECCGGGCCCSSCCEESSSCCSSTTSCCCEECCHHHHHHHHHHHHHHHHHHHHTTCSEEEEEECTT
T ss_pred HHHHHhcCCEEEEEecCCCcccCCCCCCcCCCCCCCCCCCCCCccCCHHHHHHHHHHHHHHHHHHHHcCCCEEEeccccc
Confidence 21 2235788999731 011 3445666788889999999998763
Q ss_pred CCcchhHHHhhhcCCCCccccccccccccCCCccccchhhHHHhhhccCCCCCHHHHHHHHHhcCCCEEEEecc------
Q 017781 161 RLGRREADIKNRFTLPPFLTLKNFQGLDLGKMDEANDSGLAAYVAGQIDRSLSWKDVKWLQTITKLPILVKGVL------ 234 (366)
Q Consensus 161 ~~g~r~~d~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~i~~lr~~~~~pv~vK~v~------ 234 (366)
.. .+.|--|. ...+ +..-+ +. +. ....+..+.++.+|+.++.||.+|...
T Consensus 169 yL-------l~qFlsp~-~n~R------------~d~yG-Gs-le--nr~r~~~eiv~avr~~v~~pv~vris~~~~~~~ 224 (338)
T 1z41_A 169 YL-------IHEFLSPL-SNHR------------TDEYG-GS-PE--NRYRFLREIIDEVKQVWDGPLFVRVSASDYTDK 224 (338)
T ss_dssp SH-------HHHHHCTT-TCCC------------CSTTS-SS-HH--HHHHHHHHHHHHHHHHCCSCEEEEEECCCCSTT
T ss_pred hH-------HHHccCCC-cCCc------------CcccC-cc-hh--hhHHHHHHHHHHHHHHcCCcEEEEecCcccCCC
Confidence 21 11221111 0000 00000 00 11 123456788999999999999999754
Q ss_pred --CHHH--------HHcCCcEEEEcCCCcc-C-CCCCc-chHHHHHHHHHHcCCCceEEEecCCCCHHHHHHHHHhC-cC
Q 017781 235 --TAED--------VQAGAAGIIVSNHGAR-Q-LDYVP-ATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALG-AS 300 (366)
Q Consensus 235 --~~~d--------~~aGad~I~vs~~gg~-~-~~~~~-~~~~~l~~i~~~~~~~i~vi~~GGI~~~~dv~kalalG-Ad 300 (366)
+.++ .++|+|+|.+++.... + ...++ ..++.+.++++.+ ++|||+.|||++++++.++|+.| ||
T Consensus 225 g~~~~~~~~~a~~l~~~Gvd~i~v~~~~~~~~~~~~~~~~~~~~~~~ir~~~--~iPVi~~Ggi~s~~~a~~~l~~G~aD 302 (338)
T 1z41_A 225 GLDIADHIGFAKWMKEQGVDLIDCSSGALVHADINVFPGYQVSFAEKIREQA--DMATGAVGMITDGSMAEEILQNGRAD 302 (338)
T ss_dssp SCCHHHHHHHHHHHHHTTCCEEEEECCCSSCCCCCCCTTTTHHHHHHHHHHH--CCEEEECSSCCSHHHHHHHHHTTSCS
T ss_pred CCCHHHHHHHHHHHHHcCCCEEEEecCccccCCCCCCccchHHHHHHHHHHC--CCCEEEECCCCCHHHHHHHHHcCCce
Confidence 3444 7899999999874321 1 11222 2467788888888 89999999999999999999999 99
Q ss_pred EEEecHHHHH
Q 017781 301 GIFIGRPVVY 310 (366)
Q Consensus 301 ~V~igr~~l~ 310 (366)
+|++||+++.
T Consensus 303 ~V~iGR~~i~ 312 (338)
T 1z41_A 303 LIFIGRELLR 312 (338)
T ss_dssp EEEECHHHHH
T ss_pred EEeecHHHHh
Confidence 9999999986
|
| >2gou_A Oxidoreductase, FMN-binding; OLD yeallow enzyme, flavoenzyme; HET: BOG FMN PE4; 1.40A {Shewanella oneidensis} PDB: 2gq8_A* 2gq9_A* 2gqa_A* | Back alignment and structure |
|---|
Probab=99.45 E-value=1.2e-12 Score=128.16 Aligned_cols=218 Identities=17% Similarity=0.136 Sum_probs=140.3
Q ss_pred eeEcCcccCCceEecccccccccCChh---hHHHHHHHHHcCCceecCCCCCC--------------CHHH------Hhc
Q 017781 63 TTVLGFKISMPIMIAPTAMQKMAHPEG---EYATARAASAAGTIMTLSSWSTS--------------SVEE------VAS 119 (366)
Q Consensus 63 t~l~g~~l~~Pi~iApm~~~~l~~~~~---e~~la~aa~~~G~~~~vs~~~~~--------------~~e~------i~~ 119 (366)
.+|.+.++++.|++|||+...-..+++ +..+..-++++++++++++..+. +.+. +.+
T Consensus 9 ~~ig~~~l~NRiv~aPm~~~~a~~~~g~~t~~~~~~y~~rA~~GLiite~~~v~~~g~~~~~~~gi~~d~~i~~~~~l~~ 88 (365)
T 2gou_A 9 ITLGALTLKNRIVMPPMTRSRASQPGDVANHMMAIYYAQRASAGLIVSEGTQISPTAKGYAWTPGIYTPEQIAGWRIVTE 88 (365)
T ss_dssp EEETTEEESSSEEECCCCCCCCBTTTTBCCHHHHHHHHTTTTSSEEEEEEEESSGGGCCSTTCCBSSSHHHHHHHHHHHH
T ss_pred eeECCEEEcCceEECCCCCCcccCCCCCCCHHHHHHHHHHhcCCEEEECceeecccccCCCCCCccCCHHHHHHHHHHHH
Confidence 578899999999999997654211332 56666777777777777544211 2222 211
Q ss_pred ---cCCCceEEEeee------------------------c-----------------CCH------------HHHHHHHH
Q 017781 120 ---TGPGIRFFQLYV------------------------Y-----------------KDR------------NVVAQLVR 143 (366)
Q Consensus 120 ---~~~~~~~~Qly~------------------------~-----------------~d~------------~~~~~~l~ 143 (366)
....+.++||+- . ..+ +...+..+
T Consensus 89 ~vh~~g~~i~~QL~H~Gr~~~~~~~~g~~~~apS~i~~~~~~~~~~~~~g~~~~~~~~~p~~mt~~eI~~~i~~f~~aA~ 168 (365)
T 2gou_A 89 AVHAKGCAIFAQLWHVGRVTHPDNIDGQQPISSSTLKAENVKVFVDNGSDEPGFVDVAVPRAMTKADIAQVIADYRQAAL 168 (365)
T ss_dssp HHHHHSCEEEEEEECCTTSSCGGGTTTCCCEESSSCCCTTCEEEECCSSSSCEEEECCCCEECCHHHHHHHHHHHHHHHH
T ss_pred HHHhcCCeEEEEeecCCCcccccccCCCCccCCCCccccccccccccccccccccCCCCCCcCCHHHHHHHHHHHHHHHH
Confidence 112567889862 0 112 34556667
Q ss_pred HHHHcCCCEEEEecCCCCCcchhHHHhhhcCCCCccccccccccccCCCccccchhhHHHhhhccCCCCCHHHHHHHHHh
Q 017781 144 RAERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLTLKNFQGLDLGKMDEANDSGLAAYVAGQIDRSLSWKDVKWLQTI 223 (366)
Q Consensus 144 ra~~~G~~ai~vtvd~p~~g~r~~d~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~i~~lr~~ 223 (366)
+++++|++++-|+..|... .+.|--|. + |.. +..-+ +. +. ....+..+.++.+|+.
T Consensus 169 ~a~~aGfDgVeih~a~gYL-------l~qFlsp~--~--N~R---------~D~yG-Gs-le--nr~r~~~eiv~avr~~ 224 (365)
T 2gou_A 169 NAMEAGFDGIELHAANGYL-------INQFIDSE--A--NNR---------SDEYG-GS-LE--NRLRFLDEVVAALVDA 224 (365)
T ss_dssp HHHHTTCSEEEEECCTTSH-------HHHHHSGG--G--CCC---------CSTTS-SS-HH--HHTHHHHHHHHHHHHH
T ss_pred HHHHcCCCEEEEecccchh-------HhhccCCC--c--cCc---------CcccC-cc-hh--hhHHHHHHHHHHHHHH
Confidence 7889999999998876421 11111110 0 000 00000 00 11 1234566889999999
Q ss_pred cCC-CEEEEeccC-----------HHH--------HHcCCcEEEEcCCCccCCCCCc-chHHHHHHHHHHcCCCceEEEe
Q 017781 224 TKL-PILVKGVLT-----------AED--------VQAGAAGIIVSNHGARQLDYVP-ATIMALEEVVKATQGRIPVFLD 282 (366)
Q Consensus 224 ~~~-pv~vK~v~~-----------~~d--------~~aGad~I~vs~~gg~~~~~~~-~~~~~l~~i~~~~~~~i~vi~~ 282 (366)
++. ||.+|.... .++ .++|+|+|.+++..- +..+ -.++.+.++++.+ ++|||+.
T Consensus 225 vg~~pv~vris~~~~~~~~~~~~~~~~~~~~a~~l~~~G~d~i~v~~~~~---~~~~~~~~~~~~~i~~~~--~iPvi~~ 299 (365)
T 2gou_A 225 IGAERVGVRLAPLTTLNGTVDADPILTYTAAAALLNKHRIVYLHIAEVDW---DDAPDTPVSFKRALREAY--QGVLIYA 299 (365)
T ss_dssp HCGGGEEEEECSSCCTTSCCCSSHHHHHHHHHHHHHHTTCSEEEEECCBT---TBCCCCCHHHHHHHHHHC--CSEEEEE
T ss_pred cCCCcEEEEEccccccCCCCCCCCHHHHHHHHHHHHHcCCCEEEEeCCCc---CCCCCccHHHHHHHHHHC--CCcEEEe
Confidence 843 999998752 122 789999999987421 1111 1356778888888 7999999
Q ss_pred cCCCCHHHHHHHHHhC-cCEEEecHHHHH
Q 017781 283 GGVRRGTDVFKALALG-ASGIFIGRPVVY 310 (366)
Q Consensus 283 GGI~~~~dv~kalalG-Ad~V~igr~~l~ 310 (366)
||| +++++.++|+.| ||+|++||+++.
T Consensus 300 Ggi-~~~~a~~~l~~g~aD~V~igR~~i~ 327 (365)
T 2gou_A 300 GRY-NAEKAEQAINDGLADMIGFGRPFIA 327 (365)
T ss_dssp SSC-CHHHHHHHHHTTSCSEEECCHHHHH
T ss_pred CCC-CHHHHHHHHHCCCcceehhcHHHHh
Confidence 999 999999999998 999999999986
|
| >2uva_G Fatty acid synthase beta subunits; fungal, dehydratase, enoyl reductase, ketoacyl synthase, ketoacyl reductase; HET: FMN; 3.10A {Thermomyces lanuginosus} PDB: 2uvc_G* | Back alignment and structure |
|---|
Probab=99.45 E-value=4.8e-13 Score=153.78 Aligned_cols=210 Identities=16% Similarity=0.177 Sum_probs=139.5
Q ss_pred eeccccCC-CCCCccceeEcCcccCCceEecccccccccCChhhHHHHHHHHHcCCceecCCCCCCCHHHH-------hc
Q 017781 48 FRPRILID-VSKIDMNTTVLGFKISMPIMIAPTAMQKMAHPEGEYATARAASAAGTIMTLSSWSTSSVEEV-------AS 119 (366)
Q Consensus 48 l~pr~l~~-~~~vd~st~l~g~~l~~Pi~iApm~~~~l~~~~~e~~la~aa~~~G~~~~vs~~~~~~~e~i-------~~ 119 (366)
|.||..+. -.+++++|.|....-..||+.|||++.. .+..|+.+++++|...+++.....+.+++ ++
T Consensus 558 f~prlv~~~~~~~~l~t~~t~~lg~~PIi~a~M~~~v-----s~~~LaaAva~aGglG~i~g~g~~~~e~l~~~i~~vk~ 632 (2060)
T 2uva_G 558 HGPRLVKTSVGQTFVDTKMSRLLGVPPVMVAGMTPTT-----VPWDFVAATMNAGYHIELAGGGYYNAQKMSDAISKIEK 632 (2060)
T ss_dssp HCCEEEECTTCCEEEECHHHHHHTSCSEEECCCTTTT-----CSHHHHHHHHHTTCEECEEGGGCCSHHHHHHHHHHHGG
T ss_pred cCCcceecCCCceecchhhhhccccceEEecCCCCcc-----ccHHHHHHHHHCCCEEEECcCCCCCHHHHHHHHHHHHh
Confidence 45666542 2345666654322116999999998421 26689999999999999944444555543 23
Q ss_pred cC--CCceEEEeeecCCH--HHHHHHHHHHHHcCCCE--EEEecCCCCCcchhHHHhhhcCCCCccccccccccccCCCc
Q 017781 120 TG--PGIRFFQLYVYKDR--NVVAQLVRRAERAGFKA--IALTVDTPRLGRREADIKNRFTLPPFLTLKNFQGLDLGKMD 193 (366)
Q Consensus 120 ~~--~~~~~~Qly~~~d~--~~~~~~l~ra~~~G~~a--i~vtvd~p~~g~r~~d~~~~~~~p~~~~~~~~~~~~~~~~~ 193 (366)
.. ..++.+++...... ....++++.+.+.|++. +.++.+.
T Consensus 633 ~~~~~~p~gvN~~~~~p~~~~~~~~~~~~~~~~gv~i~gv~~~~G~---------------------------------- 678 (2060)
T 2uva_G 633 AIPPGRGITVNLIYVNPRAMGWQIPLLGRLRADGVPIEGLTIGAGV---------------------------------- 678 (2060)
T ss_dssp GSCTTCCEEEEEETTCTTHHHHHHHHHHHHHTTTCCEEEEEEESSC----------------------------------
T ss_pred hcccCCCeEecccccCcccchhHHHHHHHHHHcCCCcceEeecCCC----------------------------------
Confidence 33 25677777543222 22457788888888877 4332221
Q ss_pred cccchhhHHHhhhccCCCCCHH-HHHHHHHhcCCCEEEEeccCHHH--------HHcCCcEEE---EcC--CCccC--CC
Q 017781 194 EANDSGLAAYVAGQIDRSLSWK-DVKWLQTITKLPILVKGVLTAED--------VQAGAAGII---VSN--HGARQ--LD 257 (366)
Q Consensus 194 ~~~~~~~~~~~~~~~d~~~~~~-~i~~lr~~~~~pv~vK~v~~~~d--------~~aGad~I~---vs~--~gg~~--~~ 257 (366)
| ..+ .++.+++ .+++++ +.+.+..+ .++|+|+|+ +.+ .||+. .+
T Consensus 679 ----------------p--~~e~~~~~l~~-~gi~~i-~~v~~~~~a~~~v~~l~~aG~D~iV~~q~~G~eaGGH~g~~d 738 (2060)
T 2uva_G 679 ----------------P--SIEVANEYIQT-LGIRHI-SFKPGSVDAIQQVINIAKANPTFPIILQWTGGRGGGHHSFED 738 (2060)
T ss_dssp ----------------C--CHHHHHHHHHH-SCCSEE-EECCCSHHHHHHHHHHHHHCTTSCEEEEECCTTSSSSCCSCC
T ss_pred ----------------C--CHHHHHHHHHH-cCCeEE-EecCCHHHHHHHHHHHHHcCCCEEEEeeeEcccCCCCCCccc
Confidence 1 222 3444544 478876 55555444 688999999 554 22321 23
Q ss_pred CCcchHHHHHHHHHHcCCCceEEEecCCCCHHHHHHHH-----------HhCcCEEEecHHHHHHhhhcCHH
Q 017781 258 YVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKAL-----------ALGASGIFIGRPVVYSLAAEGEK 318 (366)
Q Consensus 258 ~~~~~~~~l~~i~~~~~~~i~vi~~GGI~~~~dv~kal-----------alGAd~V~igr~~l~~l~~~G~~ 318 (366)
...+.+..+++|++.+ ++|||++|||.++.|++++| ++|||+|++|+.|+.+..+.-.+
T Consensus 739 ~~~~~l~lv~~i~~~~--~ipviaaGGI~~g~~i~aaltg~ws~~~g~palGAdgV~~GT~f~~t~Ea~~s~ 808 (2060)
T 2uva_G 739 FHQPILLMYSRIRKCS--NIVLVAGSGFGGSEDTYPYLTGSWSTKFGYPPMPFDGCMFGSRMMTAKEAHTSK 808 (2060)
T ss_dssp SHHHHHHHHHHHHTST--TEEEEEESSCCSHHHHHHHHHTCGGGTTTSCCCCCSCEEESGGGGGBTTSCCCH
T ss_pred ccchHHHHHHHHHHHc--CCCEEEeCCCCCHHHHHHHhcCcchhhcCCCCCCCCEEEEchhhhcCcCCCCCH
Confidence 3466788999999887 79999999999999999999 99999999999998765554333
|
| >1vyr_A Pentaerythritol tetranitrate reductase; oxidoreductase, flavoenzyme, explosive degradation, steroid binding; HET: FMN TNF; 0.9A {Enterobacter cloacae} SCOP: c.1.4.1 PDB: 1gvq_A* 1gvr_A* 1gvs_A* 1h50_A* 1h51_A* 1h60_A* 1h61_A* 1h62_A* 1h63_A* 1gvo_A* 2aba_A* 3f03_K* 3kft_A* 3p7y_A* 3p80_A* 3p81_A* 3p62_A* 3p8i_A* 2abb_A* 3p67_A* ... | Back alignment and structure |
|---|
Probab=99.43 E-value=6e-12 Score=123.03 Aligned_cols=219 Identities=17% Similarity=0.138 Sum_probs=141.7
Q ss_pred eeEcCcccCCceEecccccccccCCh---hhHHHHHHHHHcCCceecCCCCC--------------CCHHH------Hhc
Q 017781 63 TTVLGFKISMPIMIAPTAMQKMAHPE---GEYATARAASAAGTIMTLSSWST--------------SSVEE------VAS 119 (366)
Q Consensus 63 t~l~g~~l~~Pi~iApm~~~~l~~~~---~e~~la~aa~~~G~~~~vs~~~~--------------~~~e~------i~~ 119 (366)
.+|.+.++++.|++|||+...-..++ .+..+..-++++|+++++++..+ .+.+. +.+
T Consensus 9 ~~ig~~~l~NRiv~aPm~~~~a~~~~g~~t~~~~~~y~~rAg~GLiite~~~v~~~g~~~~~~~gi~~d~~i~~~~~l~~ 88 (364)
T 1vyr_A 9 LKVGAVTAPNRVFMAPLTRLRSIEPGDIPTPLMGEYYRQRASAGLIISEATQISAQAKGYAGAPGLHSPEQIAAWKKITA 88 (364)
T ss_dssp EEETTEEESSSEEECCCCCCCCBTTTTBCCHHHHHHHHHTTTSSEEEEEEEESSSTTCCSTTCCBSSSHHHHHHHHHHHH
T ss_pred eeECCEEECCccEECCCCCCcccCCCCCCCHHHHHHHHHHhcCCEEEEccccccccccCCCCCcccCCHHHHHHHHHHHH
Confidence 57889999999999999864321233 36677777777888888765421 12222 211
Q ss_pred ---cCCCceEEEeee------------c-----------------------------CCH------------HHHHHHHH
Q 017781 120 ---TGPGIRFFQLYV------------Y-----------------------------KDR------------NVVAQLVR 143 (366)
Q Consensus 120 ---~~~~~~~~Qly~------------~-----------------------------~d~------------~~~~~~l~ 143 (366)
....+.++||+- . ..+ +...+..+
T Consensus 89 ~vh~~g~~i~~QL~H~Gr~~~~~~~~~g~~~~apS~i~~~~~~~~~~~~g~~~~~~~~~p~~mt~~eI~~~i~~f~~aA~ 168 (364)
T 1vyr_A 89 GVHAEDGRIAVQLWHTGRISHSSIQPGGQAPVSASALNANTRTSLRDENGNAIRVDTTTPRALELDEIPGIVNDFRQAVA 168 (364)
T ss_dssp HHHHTTCCEEEEEECCTTSSCGGGSGGGCCCEESSSCCCCSEEEEECTTSCEEEEECCCCEECCGGGHHHHHHHHHHHHH
T ss_pred HHHhcCCeEEEEeccCCcccCcccccCCCccccCCCcccccccccccccccccccCCCCCCcCCHHHHHHHHHHHHHHHH
Confidence 223567899862 0 112 34556667
Q ss_pred HHHHcCCCEEEEecCCCCCcchhHHHhhhcCCCCccccccccccccCCCccccchhhHHHhhhccCCCCCHHHHHHHHHh
Q 017781 144 RAERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLTLKNFQGLDLGKMDEANDSGLAAYVAGQIDRSLSWKDVKWLQTI 223 (366)
Q Consensus 144 ra~~~G~~ai~vtvd~p~~g~r~~d~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~i~~lr~~ 223 (366)
+++++|++++-|+..|... .+.|--|. ...+ +..-+ +. +. ....+..+.++.+|+.
T Consensus 169 ~a~~aGfDgVeih~a~GyL-------l~qFlsp~-~N~R------------~D~yG-Gs-le--nr~r~~~eiv~avr~~ 224 (364)
T 1vyr_A 169 NAREAGFDLVELHSAHGYL-------LHQFLSPS-SNQR------------TDQYG-GS-VE--NRARLVLEVVDAVCNE 224 (364)
T ss_dssp HHHHTTCSEEEEEECTTSH-------HHHHHCTT-TCCC------------CSTTS-SS-HH--HHTHHHHHHHHHHHHH
T ss_pred HHHHcCCCEEEEcCccchH-------HHhccCCc-cccc------------CCcCC-cc-hh--cChhhHHHHHHHHHHh
Confidence 8889999999999876321 11221110 0000 00000 00 11 1234567889999999
Q ss_pred cC-CCEEEEeccC------------HHH--------HHcCCcEEEEcCCCccCCCCCcchHHHHHHHHHHcCCCceEEEe
Q 017781 224 TK-LPILVKGVLT------------AED--------VQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLD 282 (366)
Q Consensus 224 ~~-~pv~vK~v~~------------~~d--------~~aGad~I~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~i~vi~~ 282 (366)
++ .||.+|.... .++ .++|+|+|.+++.+-.+.. ...++.+.++++.+ ++|||+.
T Consensus 225 vg~~~v~vrls~~~~~~~~~~~~~~~~~~~~~a~~l~~~G~d~i~v~~~~~~~~~--~~~~~~~~~v~~~~--~iPvi~~ 300 (364)
T 1vyr_A 225 WSADRIGIRVSPIGTFQNVDNGPNEEADALYLIEELAKRGIAYLHMSETDLAGGK--PYSEAFRQKVRERF--HGVIIGA 300 (364)
T ss_dssp SCGGGEEEEECCSSCBTTBCCCTTHHHHHHHHHHHHHHTTCSEEEEECCBTTBCC--CCCHHHHHHHHHHC--CSEEEEE
T ss_pred cCCCcEEEEEccccccccccCCCCCHHHHHHHHHHHHHhCCCEEEEecCcccCCC--cccHHHHHHHHHHC--CCCEEEE
Confidence 84 3999997643 112 7899999999874321111 12456778888888 7999999
Q ss_pred cCCCCHHHHHHHHHhC-cCEEEecHHHHH
Q 017781 283 GGVRRGTDVFKALALG-ASGIFIGRPVVY 310 (366)
Q Consensus 283 GGI~~~~dv~kalalG-Ad~V~igr~~l~ 310 (366)
||| +++++.++|+.| ||+|++||+++.
T Consensus 301 Ggi-t~~~a~~~l~~g~aD~V~~gR~~l~ 328 (364)
T 1vyr_A 301 GAY-TAEKAEDLIGKGLIDAVAFGRDYIA 328 (364)
T ss_dssp SSC-CHHHHHHHHHTTSCSEEEESHHHHH
T ss_pred CCc-CHHHHHHHHHCCCccEEEECHHHHh
Confidence 999 999999999998 999999999975
|
| >2r14_A Morphinone reductase; H-tunnelling, flavoprotein, NADH, hydride transfer, oxidoreductase; HET: FMN TXD; 1.40A {Pseudomonas putida} PDB: 3gx9_A* 1gwj_A* | Back alignment and structure |
|---|
Probab=99.43 E-value=2.6e-12 Score=126.10 Aligned_cols=219 Identities=15% Similarity=0.144 Sum_probs=139.0
Q ss_pred ceeEcCcccCCceEecccccccccCCh---hhHHHHHHHHHcCCceecCCCCCC--------------CHHH------Hh
Q 017781 62 NTTVLGFKISMPIMIAPTAMQKMAHPE---GEYATARAASAAGTIMTLSSWSTS--------------SVEE------VA 118 (366)
Q Consensus 62 st~l~g~~l~~Pi~iApm~~~~l~~~~---~e~~la~aa~~~G~~~~vs~~~~~--------------~~e~------i~ 118 (366)
..+|.+.++++.|++|||+...- ++ .+..+..-++++|+++++++..+. +.+. +.
T Consensus 14 P~~ig~~~l~NRiv~aPm~~~~a--~~g~pt~~~~~~y~~rA~~GLiitE~~~v~~~g~~~~~~~gi~~d~~i~~~k~l~ 91 (377)
T 2r14_A 14 PLQLGSLSLPNRVIMAPLTRSRT--PDSVPGRLQQIYYGQRASAGLIISEATNISPTARGYVYTPGIWTDAQEAGWKGVV 91 (377)
T ss_dssp CEEETTEEESCSEEECCCCCCCC--TTSCCCHHHHHHHHHTTTSSCEEEEEEESSGGGCCBTTCCBSSSHHHHHHHHHHH
T ss_pred CeeECCEEecCCeEECCCcCCcC--CCCCCCHHHHHHHHHHhcCCEEEEcceeeccccccCCCCcccCCHHHHHHHHHHH
Confidence 36788999999999999976431 33 356666777777777776543211 2222 21
Q ss_pred c---cCCCceEEEeeec------------------------------------------CCH------------HHHHHH
Q 017781 119 S---TGPGIRFFQLYVY------------------------------------------KDR------------NVVAQL 141 (366)
Q Consensus 119 ~---~~~~~~~~Qly~~------------------------------------------~d~------------~~~~~~ 141 (366)
+ ....+.++||+-. ..+ +...+.
T Consensus 92 ~avh~~G~~i~~QL~H~Gr~~~~~~~~~~~~~~apS~i~~~~~~~~~~~~~~~~~~~~~~~p~~mt~~eI~~~i~~f~~a 171 (377)
T 2r14_A 92 EAVHAKGGRIALQLWHVGRVSHELVQPDGQQPVAPSALKAEGAECFVEFEDGTAGLHPTSTPRALETDEIPGIVEDYRQA 171 (377)
T ss_dssp HHHHHTTCCEEEEEECCTTSCCTTTSGGGCCCEESSSCCCTTCEEEEECTTSCEEEEECCCCEECCGGGHHHHHHHHHHH
T ss_pred HHHhhcCCeEEEEccCCccccccccccCCCcccCCCcccccccccccccccccccccCCCCCccCCHHHHHHHHHHHHHH
Confidence 1 1235678898630 112 345566
Q ss_pred HHHHHHcCCCEEEEecCCCCCcchhHHHhhhcCCCCccccccccccccCCCccccchhhHHHhhhccCCCCCHHHHHHHH
Q 017781 142 VRRAERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLTLKNFQGLDLGKMDEANDSGLAAYVAGQIDRSLSWKDVKWLQ 221 (366)
Q Consensus 142 l~ra~~~G~~ai~vtvd~p~~g~r~~d~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~i~~lr 221 (366)
.++++++|+++|.|+..|... .+.|--|. ...+ +..-+ +. +. ....+..+.++.+|
T Consensus 172 A~~a~~aGfDgVEIh~a~GYL-------l~QFlsp~-~N~R------------~D~yG-Gs-le--nR~r~~~eiv~aVr 227 (377)
T 2r14_A 172 AQRAKRAGFDMVEVHAANACL-------PNQFLATG-TNRR------------TDQYG-GS-IE--NRARFPLEVVDAVA 227 (377)
T ss_dssp HHHHHHHTCSEEEEEECTTCH-------HHHHHSTT-TCCC------------CSTTS-SS-HH--HHHHHHHHHHHHHH
T ss_pred HHHHHHcCCCEEEEcCcccch-------HHhccCCc-cccC------------CCccC-cc-hh--hchHHHHHHHHHHH
Confidence 678888999999999876321 11221110 0000 00000 00 11 12345678899999
Q ss_pred HhcCC-CEEEEeccC-----------HHH--------HHcCCcEEEEcCCCccCCCCCcchHHHHHHHHHHcCCCceEEE
Q 017781 222 TITKL-PILVKGVLT-----------AED--------VQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFL 281 (366)
Q Consensus 222 ~~~~~-pv~vK~v~~-----------~~d--------~~aGad~I~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~i~vi~ 281 (366)
+.++. ||.+|.... .++ .++|+|+|.+++....+...+ ..++.+.++++.+ ++|||+
T Consensus 228 ~avg~~~v~vrls~~~~~~~~~~~~~~~~~~~la~~le~~Gvd~i~v~~~~~~~~~~~-~~~~~~~~ik~~~--~iPvi~ 304 (377)
T 2r14_A 228 EVFGPERVGIRLTPFLELFGLTDDEPEAMAFYLAGELDRRGLAYLHFNEPDWIGGDIT-YPEGFREQMRQRF--KGGLIY 304 (377)
T ss_dssp HHHCGGGEEEEECTTCCCTTCCCSCHHHHHHHHHHHHHHTTCSEEEEECCC------C-CCTTHHHHHHHHC--CSEEEE
T ss_pred HHcCCCcEEEEeccccccCCCCCCCCHHHHHHHHHHHHHcCCCEEEEeCCcccCCCCc-chHHHHHHHHHHC--CCCEEE
Confidence 99853 999997532 222 789999999987421111111 1456778888888 799999
Q ss_pred ecCCCCHHHHHHHHHhC-cCEEEecHHHHH
Q 017781 282 DGGVRRGTDVFKALALG-ASGIFIGRPVVY 310 (366)
Q Consensus 282 ~GGI~~~~dv~kalalG-Ad~V~igr~~l~ 310 (366)
.||| +++++.++|+.| ||+|++||+++.
T Consensus 305 ~Ggi-~~~~a~~~l~~g~aD~V~igR~~l~ 333 (377)
T 2r14_A 305 CGNY-DAGRAQARLDDNTADAVAFGRPFIA 333 (377)
T ss_dssp ESSC-CHHHHHHHHHTTSCSEEEESHHHHH
T ss_pred ECCC-CHHHHHHHHHCCCceEEeecHHHHh
Confidence 9999 699999999998 999999999985
|
| >3gr7_A NADPH dehydrogenase; flavin, FMN, beta-alpha-barrel, oxidoreductase, flavoprotein; HET: FMN; 2.30A {Geobacillus kaustophilus} PDB: 3gr8_A* | Back alignment and structure |
|---|
Probab=99.42 E-value=5e-12 Score=122.54 Aligned_cols=98 Identities=19% Similarity=0.241 Sum_probs=78.8
Q ss_pred CCCHHHHHHHHHhcCCCEEEEeccC--------HHH--------HHcCCcEEEEcCCCccC--CCCCcc-hHHHHHHHHH
Q 017781 211 SLSWKDVKWLQTITKLPILVKGVLT--------AED--------VQAGAAGIIVSNHGARQ--LDYVPA-TIMALEEVVK 271 (366)
Q Consensus 211 ~~~~~~i~~lr~~~~~pv~vK~v~~--------~~d--------~~aGad~I~vs~~gg~~--~~~~~~-~~~~l~~i~~ 271 (366)
.+..+.++.+|+.++.||.||.... .++ .++|+|+|.|++.+-.. ...++. .++.+.++++
T Consensus 195 r~~~eiv~avr~~v~~pv~vRls~~~~~~~g~~~~~~~~la~~L~~~Gvd~i~vs~g~~~~~~~~~~~~~~~~~~~~ik~ 274 (340)
T 3gr7_A 195 RFLGEVIDAVREVWDGPLFVRISASDYHPDGLTAKDYVPYAKRMKEQGVDLVDVSSGAIVPARMNVYPGYQVPFAELIRR 274 (340)
T ss_dssp HHHHHHHHHHHHHCCSCEEEEEESCCCSTTSCCGGGHHHHHHHHHHTTCCEEEEECCCSSCCCCCCCTTTTHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCCceEEEeccccccCCCCCHHHHHHHHHHHHHcCCCEEEEecCCccCCCCCCCccccHHHHHHHHH
Confidence 4567889999999999999998742 333 88999999998632111 111222 5677888888
Q ss_pred HcCCCceEEEecCCCCHHHHHHHHHhC-cCEEEecHHHHH
Q 017781 272 ATQGRIPVFLDGGVRRGTDVFKALALG-ASGIFIGRPVVY 310 (366)
Q Consensus 272 ~~~~~i~vi~~GGI~~~~dv~kalalG-Ad~V~igr~~l~ 310 (366)
.+ ++|||+.|||++++++.++|+.| ||+|++||+++.
T Consensus 275 ~~--~iPVi~~GgI~s~e~a~~~L~~G~aD~V~iGR~~la 312 (340)
T 3gr7_A 275 EA--DIPTGAVGLITSGWQAEEILQNGRADLVFLGRELLR 312 (340)
T ss_dssp HT--TCCEEEESSCCCHHHHHHHHHTTSCSEEEECHHHHH
T ss_pred Hc--CCcEEeeCCCCCHHHHHHHHHCCCeeEEEecHHHHh
Confidence 88 79999999999999999999999 999999999985
|
| >2hsa_B 12-oxophytodienoate reductase 3; alpha beta 8 barrel, flavoprotein, jasmonate biosynthesis, oxidoreductase; HET: FMN; 1.50A {Solanum lycopersicum} PDB: 2hs6_A* 3hgs_A* 2hs8_A* 3hgo_A* 1q45_A* 2g5w_A* 2q3o_A* | Back alignment and structure |
|---|
Probab=99.35 E-value=3.8e-11 Score=118.78 Aligned_cols=148 Identities=15% Similarity=0.067 Sum_probs=97.7
Q ss_pred HHHHHHHHHHHHcCCCEEEEecCCCCCcchhHHHhhhcCCCCccccccccccccCCCccccchhhHHHhhhccCCCCCHH
Q 017781 136 NVVAQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLTLKNFQGLDLGKMDEANDSGLAAYVAGQIDRSLSWK 215 (366)
Q Consensus 136 ~~~~~~l~ra~~~G~~ai~vtvd~p~~g~r~~d~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~ 215 (366)
+...+..++|+++|+++|.|+..+... .+.|--|. ...+ +..-+ +.+ . ....+..+
T Consensus 171 ~~f~~AA~~a~~AGfDgVEIh~ahGYL-------l~QFLsp~-~N~R------------tD~yG-Gsl-e--nR~rf~~E 226 (402)
T 2hsa_B 171 EDYRRSALNAIEAGFDGIEIHGAHGYL-------IDQFLKDG-INDR------------TDEYG-GSL-A--NRCKFITQ 226 (402)
T ss_dssp HHHHHHHHHHHHTTCSEEEEECCTTSH-------HHHHHCTT-TCCC------------CSTTS-SSH-H--HHHHHHHH
T ss_pred HHHHHHHHHHHHcCCCEEEECCccchH-------HHhccCCc-cCcc------------CCccC-cCh-h--hhhHHHHH
Confidence 355666778889999999999875221 12221110 0000 00000 001 1 12345678
Q ss_pred HHHHHHHhcC-CCEEEEeccC-----------HHH--------HHcC------CcEEEEcCCCccCCCCCc--------c
Q 017781 216 DVKWLQTITK-LPILVKGVLT-----------AED--------VQAG------AAGIIVSNHGARQLDYVP--------A 261 (366)
Q Consensus 216 ~i~~lr~~~~-~pv~vK~v~~-----------~~d--------~~aG------ad~I~vs~~gg~~~~~~~--------~ 261 (366)
.++.+|+.++ .||.+|.... .++ .++| +|+|.+++....+....+ .
T Consensus 227 iv~aVr~avg~~~V~vRls~~~~~~g~~~~~~~~~~~~la~~le~~G~~gg~~vd~i~v~~~~~~~~~~~~~~~~~~~~~ 306 (402)
T 2hsa_B 227 VVQAVVSAIGADRVGVRVSPAIDHLDAMDSNPLSLGLAVVERLNKIQLHSGSKLAYLHVTQPRYVAYGQTEAGRLGSEEE 306 (402)
T ss_dssp HHHHHHHHHCGGGEEEEECSSCCSTTCCCSCHHHHHHHHHHHHHHHHHHHTSCCSEEEEECCCCCTTTTSSSTTTTHHHH
T ss_pred HHHHHHHHhCCCcEEEEeccccccCCCCCCCCHHHHHHHHHHHHhcCCccCCceEEEEEecCccccccCCccccccCCcc
Confidence 8999999985 4999997632 122 7889 999999874321111111 2
Q ss_pred hHHHHHHHHHHcCCCceEEEecCCCCHHHHHHHHHhC-cCEEEecHHHHH
Q 017781 262 TIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALG-ASGIFIGRPVVY 310 (366)
Q Consensus 262 ~~~~l~~i~~~~~~~i~vi~~GGI~~~~dv~kalalG-Ad~V~igr~~l~ 310 (366)
.++.+.++++.+ ++|||++||| +++++.++|+.| ||+|++||++|.
T Consensus 307 ~~~~~~~vk~~~--~iPvi~~G~i-~~~~a~~~l~~g~aD~V~igR~~l~ 353 (402)
T 2hsa_B 307 EARLMRTLRNAY--QGTFICSGGY-TRELGIEAVAQGDADLVSYGRLFIS 353 (402)
T ss_dssp HHHHHHHHHHHC--SSCEEEESSC-CHHHHHHHHHTTSCSEEEESHHHHH
T ss_pred hHHHHHHHHHHC--CCCEEEeCCC-CHHHHHHHHHCCCCceeeecHHHHh
Confidence 456677888888 7999999999 999999999998 999999999985
|
| >3hgj_A Chromate reductase; TIM barrel, oxidoreductase; HET: FMN; 2.00A {Thermus scotoductus} SCOP: c.1.4.0 PDB: 3hf3_A* | Back alignment and structure |
|---|
Probab=99.34 E-value=5.7e-11 Score=115.48 Aligned_cols=98 Identities=17% Similarity=0.233 Sum_probs=78.1
Q ss_pred CCCHHHHHHHHHhc--CCCEEEEecc--------CHHH--------HHcCCcEEEEcCCCcc-C--CCCCc-chHHHHHH
Q 017781 211 SLSWKDVKWLQTIT--KLPILVKGVL--------TAED--------VQAGAAGIIVSNHGAR-Q--LDYVP-ATIMALEE 268 (366)
Q Consensus 211 ~~~~~~i~~lr~~~--~~pv~vK~v~--------~~~d--------~~aGad~I~vs~~gg~-~--~~~~~-~~~~~l~~ 268 (366)
.+..+.++.+|+.+ +.||.+|... +.++ .++|+|+|.+++.+-. . ...++ ..++.+.+
T Consensus 203 r~~~eiv~aVR~avG~d~pV~vRls~~~~~~~g~~~~~~~~la~~L~~~Gvd~i~vs~g~~~~~~~~~~~~~~~~~~~~~ 282 (349)
T 3hgj_A 203 RFPLQVAQAVREVVPRELPLFVRVSATDWGEGGWSLEDTLAFARRLKELGVDLLDCSSGGVVLRVRIPLAPGFQVPFADA 282 (349)
T ss_dssp HHHHHHHHHHHHHSCTTSCEEEEEESCCCSTTSCCHHHHHHHHHHHHHTTCCEEEEECCCSCSSSCCCCCTTTTHHHHHH
T ss_pred HHHHHHHHHHHHHhcCCceEEEEeccccccCCCCCHHHHHHHHHHHHHcCCCEEEEecCCcCcccccCCCccccHHHHHH
Confidence 35678899999999 6899999874 3444 7899999999863211 1 11122 25677888
Q ss_pred HHHHcCCCceEEEecCCCCHHHHHHHHHhC-cCEEEecHHHHH
Q 017781 269 VVKATQGRIPVFLDGGVRRGTDVFKALALG-ASGIFIGRPVVY 310 (366)
Q Consensus 269 i~~~~~~~i~vi~~GGI~~~~dv~kalalG-Ad~V~igr~~l~ 310 (366)
+++.+ ++|||+.|||++++++.++|+.| ||+|++||+++.
T Consensus 283 ir~~~--~iPVi~~Ggi~t~e~a~~~l~~G~aD~V~iGR~~la 323 (349)
T 3hgj_A 283 VRKRV--GLRTGAVGLITTPEQAETLLQAGSADLVLLGRVLLR 323 (349)
T ss_dssp HHHHH--CCEEEECSSCCCHHHHHHHHHTTSCSEEEESTHHHH
T ss_pred HHHHc--CceEEEECCCCCHHHHHHHHHCCCceEEEecHHHHh
Confidence 88887 79999999999999999999999 999999999985
|
| >1icp_A OPR1, 12-oxophytodienoate reductase 1; beta-alpha-barrel, protein-FMN-PEG complex, oxidoreductase; HET: FMN 2PE; 1.90A {Solanum lycopersicum} SCOP: c.1.4.1 PDB: 1icq_A* 1ics_A* 3hgr_A* 1vji_A* 2q3r_A* | Back alignment and structure |
|---|
Probab=99.30 E-value=2.5e-11 Score=119.07 Aligned_cols=147 Identities=15% Similarity=0.059 Sum_probs=94.3
Q ss_pred HHHHHHHHHHHcCCCEEEEecCCCCCcchhHHHhhhcCCCCccccccccccccCCCccccchhhHHHhhhccCCCCCHHH
Q 017781 137 VVAQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLTLKNFQGLDLGKMDEANDSGLAAYVAGQIDRSLSWKD 216 (366)
Q Consensus 137 ~~~~~l~ra~~~G~~ai~vtvd~p~~g~r~~d~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~ 216 (366)
...+..++++++|++++.|+..|... .+.|--|. ...+ +..-+ +.. . ....+..+.
T Consensus 168 ~f~~AA~~a~~aGfDgVEih~a~GyL-------l~qFlsp~-~N~R------------~D~yG-Gsl-e--nR~r~~~ei 223 (376)
T 1icp_A 168 EFRVAARNAIEAGFDGVEIHGAHGYL-------IDQFMKDQ-VNDR------------SDKYG-GSL-E--NRCRFALEI 223 (376)
T ss_dssp HHHHHHHHHHHTTCSEEEEEECTTSH-------HHHHHCTT-TCCC------------CSTTS-SSH-H--HHHHHHHHH
T ss_pred HHHHHHHHHHHcCCCEEEEcCccchh-------hhhccCCc-ccCC------------CCccC-ccH-H--HhHHHHHHH
Confidence 45666778889999999999876321 11221110 0000 00000 000 1 123456788
Q ss_pred HHHHHHhcCC-CEEEEeccC-----------HHH--------HHcCCcEEEEcCCCccCCCCCcchHHHHHHHHHHcCCC
Q 017781 217 VKWLQTITKL-PILVKGVLT-----------AED--------VQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGR 276 (366)
Q Consensus 217 i~~lr~~~~~-pv~vK~v~~-----------~~d--------~~aGad~I~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~ 276 (366)
++.+|+.++. ||.+|.... .++ .++|+|+|.+++....+...+...++.+.++++.+ +
T Consensus 224 v~aVr~avg~~~V~vrls~~~~~~g~~~~~~~~~~~~la~~le~~Gvd~i~v~~~~~~~~~~~~~~~~~~~~vr~~~--~ 301 (376)
T 1icp_A 224 VEAVANEIGSDRVGIRISPFAHYNEAGDTNPTALGLYMVESLNKYDLAYCHVVEPRMKTAWEKIECTESLVPMRKAY--K 301 (376)
T ss_dssp HHHHHHHHCGGGEEEEECTTCCTTTCCCSCHHHHHHHHHHHHGGGCCSEEEEECCSCCC------CCCCSHHHHHHC--C
T ss_pred HHHHHHHhcCCceEEEeccccccCCCCCCCCHHHHHHHHHHHHHcCCCEEEEcCCcccCCCCccccHHHHHHHHHHc--C
Confidence 9999999853 999998631 112 78999999998642111000111234456777777 7
Q ss_pred ceEEEecCCCCHHHHHHHHHhC-cCEEEecHHHHH
Q 017781 277 IPVFLDGGVRRGTDVFKALALG-ASGIFIGRPVVY 310 (366)
Q Consensus 277 i~vi~~GGI~~~~dv~kalalG-Ad~V~igr~~l~ 310 (366)
+|||+.||| +++++.++|+.| ||+|++||+++.
T Consensus 302 iPvi~~G~i-~~~~a~~~l~~g~aD~V~~gR~~l~ 335 (376)
T 1icp_A 302 GTFIVAGGY-DREDGNRALIEDRADLVAYGRLFIS 335 (376)
T ss_dssp SCEEEESSC-CHHHHHHHHHTTSCSEEEESHHHHH
T ss_pred CCEEEeCCC-CHHHHHHHHHCCCCcEEeecHHHHh
Confidence 999999999 999999999998 999999999985
|
| >3l5a_A NADH/flavin oxidoreductase/NADH oxidase; OLD yellow enzyme family, OYE-like FMN-binding domain, TIM B oxidoreductase; HET: PGE; 1.65A {Staphylococcus aureus} | Back alignment and structure |
|---|
Probab=99.30 E-value=3.1e-11 Score=119.97 Aligned_cols=99 Identities=16% Similarity=0.222 Sum_probs=75.7
Q ss_pred CCCHHHHHHHHHhc------CCCEEEEecc----------CHHH--------HH-cCCcEEEEcCCCcc-----CCCCCc
Q 017781 211 SLSWKDVKWLQTIT------KLPILVKGVL----------TAED--------VQ-AGAAGIIVSNHGAR-----QLDYVP 260 (366)
Q Consensus 211 ~~~~~~i~~lr~~~------~~pv~vK~v~----------~~~d--------~~-aGad~I~vs~~gg~-----~~~~~~ 260 (366)
.+..+.++.+|+.+ +.||.+|... +.++ .+ +|+|+|.|++.+.. +...++
T Consensus 222 Rf~~evv~aVr~~v~~~~~~~f~v~vRis~~~~~~~~~G~~~ed~~~la~~L~~~~Gvd~I~vs~g~~~~~~~~~~~~g~ 301 (419)
T 3l5a_A 222 RLCLEVMRAVQEVIDKEAPDNFILGFRATPEETRGSDLGYTIDEFNQLIDWVMDVSNIQYLAIASWGRHIYQNTSRTPGD 301 (419)
T ss_dssp HHHHHHHHHHHHHHHHHCCTTCEEEEEECSCEEETTEEEECHHHHHHHHHHHHHHSCCCCEEECCTTCCGGGCBCCCSST
T ss_pred HHHHHHHHHHHHHHhhhcCCCeeEEEecccccccCCCCCCCHHHHHHHHHHHHhhcCCcEEEEeeCCccccccccCCCCc
Confidence 35678899999987 5799999653 4454 67 99999999875421 111122
Q ss_pred c-hHHHHHHHHHHcCCCceEEEecCCCCHHHHHHHHHhCcCEEEecHHHHH
Q 017781 261 A-TIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFIGRPVVY 310 (366)
Q Consensus 261 ~-~~~~l~~i~~~~~~~i~vi~~GGI~~~~dv~kalalGAd~V~igr~~l~ 310 (366)
. .++.+..+++.+++++|||+.|||++++++.++|+. ||+|++||++|.
T Consensus 302 ~~~~~~a~~Ik~~v~~~iPVI~~GgI~t~e~Ae~~L~~-aDlVaiGR~~Ia 351 (419)
T 3l5a_A 302 HFGRPVNQIVYEHLAGRIPLIASGGINSPESALDALQH-ADMVGMSSPFVT 351 (419)
T ss_dssp TTTSBHHHHHHHHHTTSSCEEECSSCCSHHHHHHHGGG-CSEEEESTHHHH
T ss_pred cccHHHHHHHHHHcCCCCeEEEECCCCCHHHHHHHHHh-CCcHHHHHHHHH
Confidence 1 234567777777667999999999999999999999 999999999975
|
| >3kru_A NADH:flavin oxidoreductase/NADH oxidase; homotetramer, dimer of dimers, TIM barrel, thermophilic, OLD enzyme; HET: FMN; 1.60A {Thermoanaerobacter pseudethanolicus AT} SCOP: c.1.4.0 PDB: 3krz_A* | Back alignment and structure |
|---|
Probab=99.27 E-value=1.2e-10 Score=112.73 Aligned_cols=97 Identities=16% Similarity=0.111 Sum_probs=75.8
Q ss_pred CCCHHHHHHHHHhc--CCCEEEEeccC--------HHH--------HHcCCcEEEEcCCCccC--CCCCc-chHHHHHHH
Q 017781 211 SLSWKDVKWLQTIT--KLPILVKGVLT--------AED--------VQAGAAGIIVSNHGARQ--LDYVP-ATIMALEEV 269 (366)
Q Consensus 211 ~~~~~~i~~lr~~~--~~pv~vK~v~~--------~~d--------~~aGad~I~vs~~gg~~--~~~~~-~~~~~l~~i 269 (366)
.+..+.++.+|+.+ +.||.+|...+ .++ .++ +|+|.++..+-.. ....+ ..++.+.++
T Consensus 194 rf~~eiv~aVr~avg~d~pv~vRls~~~~~~~g~~~~~~~~~a~~l~~~-vd~i~vs~g~~~~~~~~~~~~~~~~~~~~i 272 (343)
T 3kru_A 194 RFLIEVIDEVRKNWPENKPIFVRVSADDYMEGGINIDMMVEYINMIKDK-VDLIDVSSGGLLNVDINLYPGYQVKYAETI 272 (343)
T ss_dssp HHHHHHHHHHHHTSCTTSCEEEEEECCCSSTTSCCHHHHHHHHHHHTTT-CSEEEEECCCSSCCCCCCCTTTTHHHHHHH
T ss_pred HHHHHHHHHHHhcCCccCCeEEEeechhhhccCccHHHHHHHHHHhhcc-ccEEeccCCceEeeeecccCceeehHHHHH
Confidence 45678999999999 68999998742 444 667 9999997422111 11112 246777888
Q ss_pred HHHcCCCceEEEecCCCCHHHHHHHHHhC-cCEEEecHHHHH
Q 017781 270 VKATQGRIPVFLDGGVRRGTDVFKALALG-ASGIFIGRPVVY 310 (366)
Q Consensus 270 ~~~~~~~i~vi~~GGI~~~~dv~kalalG-Ad~V~igr~~l~ 310 (366)
++.+ ++|||++|||++++++.++|+.| ||+|++||++|.
T Consensus 273 r~~~--~iPVi~~Ggi~t~e~Ae~~l~~G~aD~V~iGR~~la 312 (343)
T 3kru_A 273 KKRC--NIKTSAVGLITTQELAEEILSNERADLVALGRELLR 312 (343)
T ss_dssp HHHH--TCEEEEESSCCCHHHHHHHHHTTSCSEEEESHHHHH
T ss_pred HHhc--CcccceeeeeeHHHHHHHHHhchhhHHHHHHHHHhc
Confidence 8888 79999999999999999999998 999999999985
|
| >1ps9_A 2,4-dienoyl-COA reductase; iron-sulfur, TIM barrel, flavodoxin, flavin, electron transfer, hydride transfer, oxidoreductase; HET: FAD FMN NAP MDE; 2.20A {Escherichia coli} SCOP: c.1.4.1 c.3.1.1 c.4.1.1 | Back alignment and structure |
|---|
Probab=99.26 E-value=6.7e-11 Score=124.21 Aligned_cols=223 Identities=13% Similarity=0.096 Sum_probs=136.7
Q ss_pred ceeEcCcccCCceEecccccccccCChh-h--HHHHHHHHHcCCceecCCCCCC--------------CHHH------Hh
Q 017781 62 NTTVLGFKISMPIMIAPTAMQKMAHPEG-E--YATARAASAAGTIMTLSSWSTS--------------SVEE------VA 118 (366)
Q Consensus 62 st~l~g~~l~~Pi~iApm~~~~l~~~~~-e--~~la~aa~~~G~~~~vs~~~~~--------------~~e~------i~ 118 (366)
..+|.+.+++++|++|||+...-..+.. + ...-+.-++.|++++++++.+. +.+. +.
T Consensus 8 p~~ig~~~l~nRi~~apm~~~~~~~~~~~~~~~~~y~~ra~gg~gliite~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~ 87 (671)
T 1ps9_A 8 PLDLGFTTLKNRVLMGSMHTGLEEYPDGAERLAAFYAERARHGVALIVSGGIAPDLTGVGMEGGAMLNDASQIPHHRTIT 87 (671)
T ss_dssp CEECSSCEESSSEEECCCCCSCTTSTTHHHHHHHHHHHHHHTTCSEEEEEEEBSSSTTCSBTTCCBCCSGGGHHHHHHHH
T ss_pred CeeECCEEEcCceEECCccCCcCCCCCCcHHHHHHHHHHhcCCCCEEEecccccCccccCCCCCCccCCHHHHHHHHHHH
Confidence 3578889999999999997532111211 1 2222223356788777543211 1121 21
Q ss_pred c---cCCCceEEEeeec---------------------CCH------------HHHHHHHHHHHHcCCCEEEEecCCCCC
Q 017781 119 S---TGPGIRFFQLYVY---------------------KDR------------NVVAQLVRRAERAGFKAIALTVDTPRL 162 (366)
Q Consensus 119 ~---~~~~~~~~Qly~~---------------------~d~------------~~~~~~l~ra~~~G~~ai~vtvd~p~~ 162 (366)
+ ....+.++||+-. ..+ +...+..++++++||+++-|+..+...
T Consensus 88 ~~vh~~g~~i~~Ql~h~Gr~~~~~~~~~ps~~~~~~~~~~p~~~t~~ei~~~i~~~~~aA~~a~~aGfd~veih~~~gyl 167 (671)
T 1ps9_A 88 EAVHQEGGKIALQILHTGRYSYQPHLVAPSALQAPINRFVPHELSHEEILQLIDNFARCAQLAREAGYDGVEVMGSEGYL 167 (671)
T ss_dssp HHHHHTTCCEEEEECCCGGGSBSTTCEESSSCCCTTCSSCCEECCHHHHHHHHHHHHHHHHHHHHTTCSEEEEEECBTSH
T ss_pred HHHHhcCCEEEEEeccCCcccCCCCCcCCCCcccccCCCCCccCCHHHHHHHHHHHHHHHHHHHHcCCCEEEEccccchH
Confidence 1 2235789999741 011 345566678888999999998875321
Q ss_pred cchhHHHhhhcCCCCccccccccccccCCCccccchhhHHHhhhccCCCCCHHHHHHHHHhc--CCCEEEEecc------
Q 017781 163 GRREADIKNRFTLPPFLTLKNFQGLDLGKMDEANDSGLAAYVAGQIDRSLSWKDVKWLQTIT--KLPILVKGVL------ 234 (366)
Q Consensus 163 g~r~~d~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~i~~lr~~~--~~pv~vK~v~------ 234 (366)
.+.|--|. ...+ +..-+ +. +. ....+..+.++.+|+.+ +.||.+|...
T Consensus 168 -------~~qFlsp~-~n~r------------~d~yG-gs-~~--~r~r~~~eiv~avr~~vG~~~~v~vrls~~~~~~~ 223 (671)
T 1ps9_A 168 -------INEFLTLR-TNQR------------SDQWG-GD-YR--NRMRFAVEVVRAVRERVGNDFIIIYRLSMLDLVED 223 (671)
T ss_dssp -------HHHHHCTT-TCCC------------CSTTS-SS-HH--HHHHHHHHHHHHHHHHHCSSSEEEEEEEEECCSTT
T ss_pred -------HHHhCCCc-cCCC------------cCcCC-Cc-HH--HHHHHHHHHHHHHHHHcCCCceEEEEECccccCCC
Confidence 12221110 0000 00000 00 01 12345678899999998 7899999762
Q ss_pred --CHHH--------HHcCCcEEEEcCCCccC------CCCCcc-hHHHHHHHHHHcCCCceEEEecCCCCHHHHHHHHHh
Q 017781 235 --TAED--------VQAGAAGIIVSNHGARQ------LDYVPA-TIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALAL 297 (366)
Q Consensus 235 --~~~d--------~~aGad~I~vs~~gg~~------~~~~~~-~~~~l~~i~~~~~~~i~vi~~GGI~~~~dv~kalal 297 (366)
+.++ .++|+|+|.+++..... ...++. .++.+.++++.+ ++|||+.|||.+++++.++|+.
T Consensus 224 g~~~~~~~~~a~~l~~~g~d~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~--~iPvi~~Ggi~~~~~a~~~l~~ 301 (671)
T 1ps9_A 224 GGTFAETVELAQAIEAAGATIINTGIGWHEARIPTIATPVPRGAFSWVTRKLKGHV--SLPLVTTNRINDPQVADDILSR 301 (671)
T ss_dssp CCCHHHHHHHHHHHHHHTCSEEEEEECBTTCSSCSSSTTSCTTTTHHHHHHHTTSC--SSCEEECSSCCSHHHHHHHHHT
T ss_pred CCCHHHHHHHHHHHHhcCCCEEEcCCCccccccccccccCCcchHHHHHHHHHHhc--CceEEEeCCCCCHHHHHHHHHc
Confidence 3443 78999999998632111 011111 246677777666 7999999999999999999999
Q ss_pred C-cCEEEecHHHHH
Q 017781 298 G-ASGIFIGRPVVY 310 (366)
Q Consensus 298 G-Ad~V~igr~~l~ 310 (366)
| ||+|++||+++.
T Consensus 302 g~aD~V~~gR~~l~ 315 (671)
T 1ps9_A 302 GDADMVSMARPFLA 315 (671)
T ss_dssp TSCSEEEESTHHHH
T ss_pred CCCCEEEeCHHHHh
Confidence 8 999999999985
|
| >1o94_A Tmadh, trimethylamine dehydrogenase; electron transport, protein complex; HET: FMN ADP AMP; 2.0A {Methylophilus methylotrophus} SCOP: c.1.4.1 c.3.1.1 c.4.1.1 PDB: 1djn_A* 1o95_A* 2tmd_A* 1djq_A* | Back alignment and structure |
|---|
Probab=99.26 E-value=3.9e-11 Score=127.30 Aligned_cols=222 Identities=12% Similarity=0.100 Sum_probs=135.9
Q ss_pred eeEcCcccCCceEecccccccc-cCChhhHHHHHHHHHcCCceecCCCCC-------C--------CHHH------Hhc-
Q 017781 63 TTVLGFKISMPIMIAPTAMQKM-AHPEGEYATARAASAAGTIMTLSSWST-------S--------SVEE------VAS- 119 (366)
Q Consensus 63 t~l~g~~l~~Pi~iApm~~~~l-~~~~~e~~la~aa~~~G~~~~vs~~~~-------~--------~~e~------i~~- 119 (366)
.+|.+.+++++|++|||+...- ..|......-+.-++.|+++++++..+ . +.+. +.+
T Consensus 13 ~~ig~~~l~NRiv~apm~~~~~~~~~~~~~~~y~~ra~gG~Gliite~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 92 (729)
T 1o94_A 13 IQIGPKTLRNRFYQVPHCIGAGSDKPGFQSAHRSVKAEGGWAALNTEYCSINPESDDTHRLSARIWDEGDVRNLKAMTDE 92 (729)
T ss_dssp EEETTEEESSSEEECCCCCSCTTTCHHHHHHHHHHHHHTTCSEEEEEEEESSTTSCCTTSCCEECSSHHHHHHHHHHHHH
T ss_pred eeECCEEECCccEECCCcCCcCCCCcHHHHHHHHHHhcCCCCEEEEcceEecCcccCCCCCCCccCChHHhHHHHHHHHH
Confidence 6788999999999999965321 112111122222336677777643211 0 1221 111
Q ss_pred --cCCCceEEEeeecC-----------------------C---------------HHHHHHHHHHHHHcCCCEEEEecCC
Q 017781 120 --TGPGIRFFQLYVYK-----------------------D---------------RNVVAQLVRRAERAGFKAIALTVDT 159 (366)
Q Consensus 120 --~~~~~~~~Qly~~~-----------------------d---------------~~~~~~~l~ra~~~G~~ai~vtvd~ 159 (366)
....+.++||+-.. + .+...+..++|+++|++++.|+..+
T Consensus 93 vh~~g~~i~~Ql~h~Gr~~~~~~~~~~~~~ps~~~~~~~~~~~p~~~t~~eI~~~i~~f~~aA~~a~~aGfDgVEih~a~ 172 (729)
T 1o94_A 93 VHKYGALAGVELWYGGAHAPNMESRATPRGPSQYASEFETLSYCKEMDLSDIAQVQQFYVDAAKRSRDAGFDIVYVYGAH 172 (729)
T ss_dssp HHTTTCEEEEEEECCGGGSCCTTTCCCCEESSCCBCSSSTTCBCEECCHHHHHHHHHHHHHHHHHHHHTTCSEEEEEECT
T ss_pred HHhCCCeEEEEecCCCccccccccCCCCcCCCcccccccCCCCCCcCCHHHHHHHHHHHHHHHHHHHHcCCCEEEEcccc
Confidence 12356889996410 0 1345566778889999999999876
Q ss_pred CCCcchhHHHhhhcCCCCccccccccccccCCCccccchhhHHHhhhccCCCCCHHHHHHHHHhc--CCCEEEEecc---
Q 017781 160 PRLGRREADIKNRFTLPPFLTLKNFQGLDLGKMDEANDSGLAAYVAGQIDRSLSWKDVKWLQTIT--KLPILVKGVL--- 234 (366)
Q Consensus 160 p~~g~r~~d~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~i~~lr~~~--~~pv~vK~v~--- 234 (366)
.. +.+.|--|. ..-+ ++.-+ +.+ . ....+..+.++.+|+.+ +.||.+|...
T Consensus 173 gy-------Ll~qFlsp~-~N~R------------~D~yG-Gs~-e--nR~r~~~eiv~avr~~vg~~~pv~vrls~~~~ 228 (729)
T 1o94_A 173 SY-------LPLQFLNPY-YNKR------------TDKYG-GSL-E--NRARFWLETLEKVKHAVGSDCAIATRFGVDTV 228 (729)
T ss_dssp TC-------HHHHHHCTT-TCCC------------CSTTS-SSH-H--HHTHHHHHHHHHHHHHHTTTSEEEEEEEEECS
T ss_pred ch-------HHHHhcCCc-cCCC------------cCcCC-CCH-H--HHhHHHHHHHHHHHHHhCCCceEEEEEccccC
Confidence 32 122221110 0000 00000 011 1 12346778999999999 7899999752
Q ss_pred ------C-HHH-------HHcCCcEEEEcCCCc-----c---CCCCCcc-hHHHHHHHHHHcCCCceEEEecCCCCHHHH
Q 017781 235 ------T-AED-------VQAGAAGIIVSNHGA-----R---QLDYVPA-TIMALEEVVKATQGRIPVFLDGGVRRGTDV 291 (366)
Q Consensus 235 ------~-~~d-------~~aGad~I~vs~~gg-----~---~~~~~~~-~~~~l~~i~~~~~~~i~vi~~GGI~~~~dv 291 (366)
+ .++ .+.|+|.+.+++.+. . +....+. .+....++++.+ ++|||+.|||.+++++
T Consensus 229 ~~~~G~~~~~~~~~~~~~l~~~~d~~~v~~g~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~--~~pvi~~G~i~~~~~a 306 (729)
T 1o94_A 229 YGPGQIEAEVDGQKFVEMADSLVDMWDITIGDIAEWGEDAGPSRFYQQGHTIPWVKLVKQVS--KKPVLGVGRYTDPEKM 306 (729)
T ss_dssp SCTTSCCTTTHHHHHHHHHGGGCSEEEEEECCSTTGGGTSCCTTTCCTTTTHHHHHHHHTTC--SSCEECCSCCCCHHHH
T ss_pred cCCCCCCchHHHHHHHHHHHhhcCEEEEeeecccccccccCCccccCccccHHHHHHHHHHC--CCEEEEeCCCCCHHHH
Confidence 2 233 555899999876321 0 0111111 356677787777 8999999999999999
Q ss_pred HHHHHhC-cCEEEecHHHHH
Q 017781 292 FKALALG-ASGIFIGRPVVY 310 (366)
Q Consensus 292 ~kalalG-Ad~V~igr~~l~ 310 (366)
.++|+.| ||+|++||++|.
T Consensus 307 ~~~l~~g~aD~V~~gR~~l~ 326 (729)
T 1o94_A 307 IEIVTKGYADIIGCARPSIA 326 (729)
T ss_dssp HHHHHTTSCSBEEESHHHHH
T ss_pred HHHHHCCCCCEEEeCchhhc
Confidence 9999998 999999999975
|
| >3k30_A Histamine dehydrogenase; 6-S-cysteinyl-FMN, ADP binding site, oxidoreductase; HET: FMN ADP; 2.70A {Pimelobacter simplex} | Back alignment and structure |
|---|
Probab=99.20 E-value=3.2e-10 Score=119.50 Aligned_cols=223 Identities=13% Similarity=0.039 Sum_probs=136.7
Q ss_pred ceeEcCcccCCceEecccccccccCChhh--HHHHHHHHHcCCceecCCCCCC---------------CHH------HHh
Q 017781 62 NTTVLGFKISMPIMIAPTAMQKMAHPEGE--YATARAASAAGTIMTLSSWSTS---------------SVE------EVA 118 (366)
Q Consensus 62 st~l~g~~l~~Pi~iApm~~~~l~~~~~e--~~la~aa~~~G~~~~vs~~~~~---------------~~e------~i~ 118 (366)
..+|.+.+++++|++|||+... ..+..+ .......++-|+++++++..+. +.+ ++.
T Consensus 17 p~~ig~~~l~NRiv~apm~~~~-~~~~~~~~~~~~~~~a~gG~gliite~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~ 95 (690)
T 3k30_A 17 PVQIGPFTTKNRFYQVPHCNGM-GYRDPSAQASMRKIKAEGGWSAVCTEQVEIHATSDIAPFIELRIWDDQDLPALKRIA 95 (690)
T ss_dssp CCEETTEECSSSEEECCCCCSC-SSSCHHHHHHHHHHHHHTTCSEEEEEEEECSGGGCCTTSCCEECSSGGGHHHHHHHH
T ss_pred CeeECCEEECCCeEeCCCcCCC-CCCChHHHHHHHHHHhccCCEEEEecceEeccccccCCCcCCccCCHHHHHHHHHHH
Confidence 3678899999999999996432 223222 2344455677888877543211 111 111
Q ss_pred c---cCCCceEEEeeecC-------------------------C---------------HHHHHHHHHHHHHcCCCEEEE
Q 017781 119 S---TGPGIRFFQLYVYK-------------------------D---------------RNVVAQLVRRAERAGFKAIAL 155 (366)
Q Consensus 119 ~---~~~~~~~~Qly~~~-------------------------d---------------~~~~~~~l~ra~~~G~~ai~v 155 (366)
+ ....+.++||+-.. + .+...+..++|+++||+++.|
T Consensus 96 ~~vh~~g~~i~~Ql~h~Gr~~~~~~~~~~~~~ps~~~~~~~~~~~~~p~~~t~~ei~~~i~~f~~aA~~a~~aGfDgVei 175 (690)
T 3k30_A 96 DAIHEGGGLAGIELAHNGMNAPNQLSRETPLGPGHLPVAPDTIAPIQARAMTKQDIDDLRRWHRNAVRRSIEAGYDIVYV 175 (690)
T ss_dssp HHHHHTTCEEEEEEECCGGGCCCTTTCCCCEESSSCBSCSSCCCSCBCEECCHHHHHHHHHHHHHHHHHHHHHTCSEEEE
T ss_pred HHHHhcCCEEEEEccCCcccccccccCCCccCCCCCcccccccCCCCCCcCCHHHHHHHHHHHHHHHHHHHHcCCCEEEE
Confidence 1 12356889997200 0 134556667888999999999
Q ss_pred ecCCCCCcchhHHHhhhcCCCCccccccccccccCCCccccchhhHHHhhhccCCCCCHHHHHHHHHhc--CCCEEEEec
Q 017781 156 TVDTPRLGRREADIKNRFTLPPFLTLKNFQGLDLGKMDEANDSGLAAYVAGQIDRSLSWKDVKWLQTIT--KLPILVKGV 233 (366)
Q Consensus 156 tvd~p~~g~r~~d~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~i~~lr~~~--~~pv~vK~v 233 (366)
+..++.. +.+.|--|. ..-+ ++.-+ +.. . ....+..+.++.+|+.+ +.||.+|..
T Consensus 176 h~a~gy~------L~~qFlsp~-~N~R------------~D~yG-Gs~-e--nR~r~~~ei~~avr~~~g~~~~v~~r~s 232 (690)
T 3k30_A 176 YGAHGYS------GVHHFLSKR-YNQR------------TDEYG-GSL-E--NRMRLLRELLEDTLDECAGRAAVACRIT 232 (690)
T ss_dssp EECTTCS------HHHHHHCTT-TCCC------------CSTTS-SSH-H--HHTHHHHHHHHHHHHHHTTSSEEEEEEE
T ss_pred cccccch------HHHHhCCCc-cCCC------------ccccC-CCH-H--HHHHHHHHHHHHHHHHhCCCceEEEEEC
Confidence 9876540 122221111 0000 00000 011 1 12345678899999998 578999974
Q ss_pred c--------CHHH-------HHcCCcEEEEcCCCc---cC--CCCCc-chHHHHHHHHHHcCCCceEEEecCCCCHHHHH
Q 017781 234 L--------TAED-------VQAGAAGIIVSNHGA---RQ--LDYVP-ATIMALEEVVKATQGRIPVFLDGGVRRGTDVF 292 (366)
Q Consensus 234 ~--------~~~d-------~~aGad~I~vs~~gg---~~--~~~~~-~~~~~l~~i~~~~~~~i~vi~~GGI~~~~dv~ 292 (366)
. +.++ .+.|+|.|.|+..+- .. ..... ..++...++++.+ ++|||+.|||++++++.
T Consensus 233 ~~~~~~~g~~~~~~~~~~~~l~~~~d~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~--~~pvi~~G~i~~~~~a~ 310 (690)
T 3k30_A 233 VEEEIDGGITREDIEGVLRELGELPDLWDFAMGSWEGDSVTSRFAPEGRQEEFVAGLKKLT--TKPVVGVGRFTSPDAMV 310 (690)
T ss_dssp CCCCSTTSCCHHHHHHHHHHHTTSSSEEEEECSCHHHHTCCTTTCCTTTTHHHHTTSGGGC--SSCEEECSCCCCHHHHH
T ss_pred ccccCCCCCCHHHHHHHHHHHHhhcCEEEEecccccccCCCCccCCccccHHHHHHHHHHc--CCeEEEeCCCCCHHHHH
Confidence 2 3444 555899999986321 00 11111 1245566666666 79999999999999999
Q ss_pred HHHHhC-cCEEEecHHHHH
Q 017781 293 KALALG-ASGIFIGRPVVY 310 (366)
Q Consensus 293 kalalG-Ad~V~igr~~l~ 310 (366)
++|+.| ||+|++||++|.
T Consensus 311 ~~l~~g~~d~v~~gR~~~~ 329 (690)
T 3k30_A 311 RQIKAGILDLIGAARPSIA 329 (690)
T ss_dssp HHHHTTSCSEEEESHHHHH
T ss_pred HHHHCCCcceEEEcHHhHh
Confidence 999998 999999999975
|
| >3igs_A N-acetylmannosamine-6-phosphate 2-epimerase 2; energy metabolism, sugars, csgid, carbohydrate metabolism, isomerase; HET: MSE 16G; 1.50A {Salmonella enterica subsp} SCOP: c.1.2.0 | Back alignment and structure |
|---|
Probab=99.17 E-value=1.3e-09 Score=99.90 Aligned_cols=166 Identities=15% Similarity=0.038 Sum_probs=107.8
Q ss_pred hHHHHHHHHHcCCceecCCCCCCCHHHHhccCCCceEEEe---eec----CCHHHHHHHHHHHHHcCCCEEEEecCCCCC
Q 017781 90 EYATARAASAAGTIMTLSSWSTSSVEEVASTGPGIRFFQL---YVY----KDRNVVAQLVRRAERAGFKAIALTVDTPRL 162 (366)
Q Consensus 90 e~~la~aa~~~G~~~~vs~~~~~~~e~i~~~~~~~~~~Ql---y~~----~d~~~~~~~l~ra~~~G~~ai~vtvd~p~~ 162 (366)
-..+|+++.+.|...+. ..+...++++++....|.+-+. |.. -++ ..+.++.+.++|++.+.+..-. .
T Consensus 38 ~~~~A~a~~~~Ga~~i~-~~~~~~i~~ir~~v~~Pvig~~k~d~~~~~~~I~~--~~~~i~~~~~~Gad~V~l~~~~--~ 112 (232)
T 3igs_A 38 VAAMALAAEQAGAVAVR-IEGIDNLRMTRSLVSVPIIGIIKRDLDESPVRITP--FLDDVDALAQAGAAIIAVDGTA--R 112 (232)
T ss_dssp HHHHHHHHHHTTCSEEE-EESHHHHHHHHTTCCSCEEEECBCCCSSCCCCBSC--SHHHHHHHHHHTCSEEEEECCS--S
T ss_pred HHHHHHHHHHCCCeEEE-ECCHHHHHHHHHhcCCCEEEEEeecCCCcceEeCc--cHHHHHHHHHcCCCEEEECccc--c
Confidence 45899999999988653 2222233444544433432111 100 011 1234667788999988763210 0
Q ss_pred cchhHHHhhhcCCCCccccccccccccCCCccccchhhHHHhhhccCCCCCHHHHHHHHHhcCCCEEEEeccCHHH----
Q 017781 163 GRREADIKNRFTLPPFLTLKNFQGLDLGKMDEANDSGLAAYVAGQIDRSLSWKDVKWLQTITKLPILVKGVLTAED---- 238 (366)
Q Consensus 163 g~r~~d~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~i~~lr~~~~~pv~vK~v~~~~d---- 238 (366)
.+|....+.++.+++. ++++++ .+.+.++
T Consensus 113 ---------------------------------------------~~p~~l~~~i~~~~~~-g~~v~~-~v~t~eea~~a 145 (232)
T 3igs_A 113 ---------------------------------------------QRPVAVEALLARIHHH-HLLTMA-DCSSVDDGLAC 145 (232)
T ss_dssp ---------------------------------------------CCSSCHHHHHHHHHHT-TCEEEE-ECCSHHHHHHH
T ss_pred ---------------------------------------------CCHHHHHHHHHHHHHC-CCEEEE-eCCCHHHHHHH
Confidence 0122233457777764 666655 4567776
Q ss_pred HHcCCcEEEEcCCCccCC-CCCcchHHHHHHHHHHcCCCceEEEecCCCCHHHHHHHHHhCcCEEEecHHHHH
Q 017781 239 VQAGAAGIIVSNHGARQL-DYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFIGRPVVY 310 (366)
Q Consensus 239 ~~aGad~I~vs~~gg~~~-~~~~~~~~~l~~i~~~~~~~i~vi~~GGI~~~~dv~kalalGAd~V~igr~~l~ 310 (366)
.++|+|.|.+.++|.+.. ....+.++.++++++. ++|||++|||.+++|+.+++++|||+|++|+.++.
T Consensus 146 ~~~Gad~Ig~~~~g~t~~~~~~~~~~~~i~~l~~~---~ipvIA~GGI~t~~d~~~~~~~GadgV~VGsal~~ 215 (232)
T 3igs_A 146 QRLGADIIGTTMSGYTTPDTPEEPDLPLVKALHDA---GCRVIAEGRYNSPALAAEAIRYGAWAVTVGSAITR 215 (232)
T ss_dssp HHTTCSEEECTTTTSSSSSCCSSCCHHHHHHHHHT---TCCEEEESCCCSHHHHHHHHHTTCSEEEECHHHHC
T ss_pred HhCCCCEEEEcCccCCCCCCCCCCCHHHHHHHHhc---CCcEEEECCCCCHHHHHHHHHcCCCEEEEehHhcC
Confidence 899999997766653221 1234578888888764 79999999999999999999999999999999874
|
| >1y0e_A Putative N-acetylmannosamine-6-phosphate 2-epimer; mannac-6-P epimerase, NANE, structural genomics, protein STR initiative, PSI; 1.95A {Staphylococcus aureus subsp} SCOP: c.1.2.5 | Back alignment and structure |
|---|
Probab=99.17 E-value=9.4e-10 Score=99.65 Aligned_cols=93 Identities=18% Similarity=0.248 Sum_probs=74.5
Q ss_pred HHHHHHHHHhc-CCCEEEEeccCHHH----HHcCCcEEEEcCCCccC--CCC--CcchHHHHHHHHHHcCCCceEEEecC
Q 017781 214 WKDVKWLQTIT-KLPILVKGVLTAED----VQAGAAGIIVSNHGARQ--LDY--VPATIMALEEVVKATQGRIPVFLDGG 284 (366)
Q Consensus 214 ~~~i~~lr~~~-~~pv~vK~v~~~~d----~~aGad~I~vs~~gg~~--~~~--~~~~~~~l~~i~~~~~~~i~vi~~GG 284 (366)
.+.++++|+.+ +.+++ ..+.+.++ .++|+|+|.++++|.+. .+. ..+.++.+.++++.+ ++||+++||
T Consensus 107 ~~~i~~~~~~~~~~~v~-~~~~t~~e~~~~~~~G~d~i~~~~~g~t~~~~~~~~~~~~~~~~~~~~~~~--~ipvia~GG 183 (223)
T 1y0e_A 107 DELVSYIRTHAPNVEIM-ADIATVEEAKNAARLGFDYIGTTLHGYTSYTQGQLLYQNDFQFLKDVLQSV--DAKVIAEGN 183 (223)
T ss_dssp HHHHHHHHHHCTTSEEE-EECSSHHHHHHHHHTTCSEEECTTTTSSTTSTTCCTTHHHHHHHHHHHHHC--CSEEEEESS
T ss_pred HHHHHHHHHhCCCceEE-ecCCCHHHHHHHHHcCCCEEEeCCCcCcCCCCCCCCCcccHHHHHHHHhhC--CCCEEEecC
Confidence 45689999987 45554 46677776 88999999887765432 122 345678888998887 799999999
Q ss_pred CCCHHHHHHHHHhCcCEEEecHHHH
Q 017781 285 VRRGTDVFKALALGASGIFIGRPVV 309 (366)
Q Consensus 285 I~~~~dv~kalalGAd~V~igr~~l 309 (366)
|++++|+.+++++|||+|++|++++
T Consensus 184 I~~~~~~~~~~~~Gad~v~vG~al~ 208 (223)
T 1y0e_A 184 VITPDMYKRVMDLGVHCSVVGGAIT 208 (223)
T ss_dssp CCSHHHHHHHHHTTCSEEEECHHHH
T ss_pred CCCHHHHHHHHHcCCCEEEEChHHc
Confidence 9999999999999999999999965
|
| >3q58_A N-acetylmannosamine-6-phosphate 2-epimerase; TIM beta/alpha barrel, ribulose-phosphate binding barrel, carbohydrate metabolic process; HET: BTB; 1.80A {Salmonella enterica subsp} | Back alignment and structure |
|---|
Probab=99.17 E-value=6.9e-10 Score=101.65 Aligned_cols=166 Identities=16% Similarity=0.047 Sum_probs=108.1
Q ss_pred hHHHHHHHHHcCCceecCCCCCCCHHHHhccCCCceEE---Eeeec----CCHHHHHHHHHHHHHcCCCEEEEecCCCCC
Q 017781 90 EYATARAASAAGTIMTLSSWSTSSVEEVASTGPGIRFF---QLYVY----KDRNVVAQLVRRAERAGFKAIALTVDTPRL 162 (366)
Q Consensus 90 e~~la~aa~~~G~~~~vs~~~~~~~e~i~~~~~~~~~~---Qly~~----~d~~~~~~~l~ra~~~G~~ai~vtvd~p~~ 162 (366)
-..+|+++.+.|...+-. .+...++++++....|.+- +-|.. -++ +.+.++.+.++|++.+.+..-. .
T Consensus 38 ~~~~A~a~~~~Ga~~i~~-~~~~~i~~ir~~v~~Pvig~~k~~~~~~~~~I~~--~~~~i~~~~~aGad~I~l~~~~--~ 112 (229)
T 3q58_A 38 VAAMAQAAASAGAVAVRI-EGIENLRTVRPHLSVPIIGIIKRDLTGSPVRITP--YLQDVDALAQAGADIIAFDASF--R 112 (229)
T ss_dssp HHHHHHHHHHTTCSEEEE-ESHHHHHHHGGGCCSCEEEECBCCCSSCCCCBSC--SHHHHHHHHHHTCSEEEEECCS--S
T ss_pred HHHHHHHHHHCCCcEEEE-CCHHHHHHHHHhcCCCEEEEEeecCCCCceEeCc--cHHHHHHHHHcCCCEEEECccc--c
Confidence 458999999999886532 2222234444444334331 21111 011 1234667788999988763210 0
Q ss_pred cchhHHHhhhcCCCCccccccccccccCCCccccchhhHHHhhhccCCCCCHHHHHHHHHhcCCCEEEEeccCHHH----
Q 017781 163 GRREADIKNRFTLPPFLTLKNFQGLDLGKMDEANDSGLAAYVAGQIDRSLSWKDVKWLQTITKLPILVKGVLTAED---- 238 (366)
Q Consensus 163 g~r~~d~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~i~~lr~~~~~pv~vK~v~~~~d---- 238 (366)
.+|....+.++.+++. +.++++ .+.+.++
T Consensus 113 ---------------------------------------------~~p~~l~~~i~~~~~~-g~~v~~-~v~t~eea~~a 145 (229)
T 3q58_A 113 ---------------------------------------------SRPVDIDSLLTRIRLH-GLLAMA-DCSTVNEGISC 145 (229)
T ss_dssp ---------------------------------------------CCSSCHHHHHHHHHHT-TCEEEE-ECSSHHHHHHH
T ss_pred ---------------------------------------------CChHHHHHHHHHHHHC-CCEEEE-ecCCHHHHHHH
Confidence 0122233557777764 666555 4667776
Q ss_pred HHcCCcEEEEcCCCccCC-CCCcchHHHHHHHHHHcCCCceEEEecCCCCHHHHHHHHHhCcCEEEecHHHHH
Q 017781 239 VQAGAAGIIVSNHGARQL-DYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFIGRPVVY 310 (366)
Q Consensus 239 ~~aGad~I~vs~~gg~~~-~~~~~~~~~l~~i~~~~~~~i~vi~~GGI~~~~dv~kalalGAd~V~igr~~l~ 310 (366)
.++|+|.|.+.++|.+.. ....+.++.++++++. ++|||++|||.+++|+.+++++|||+|++|+.++.
T Consensus 146 ~~~Gad~Ig~~~~g~t~~~~~~~~~~~li~~l~~~---~ipvIA~GGI~t~~d~~~~~~~GadgV~VGsai~~ 215 (229)
T 3q58_A 146 HQKGIEFIGTTLSGYTGPITPVEPDLAMVTQLSHA---GCRVIAEGRYNTPALAANAIEHGAWAVTVGSAITR 215 (229)
T ss_dssp HHTTCSEEECTTTTSSSSCCCSSCCHHHHHHHHTT---TCCEEEESSCCSHHHHHHHHHTTCSEEEECHHHHC
T ss_pred HhCCCCEEEecCccCCCCCcCCCCCHHHHHHHHHc---CCCEEEECCCCCHHHHHHHHHcCCCEEEEchHhcC
Confidence 899999998766653221 1234578888888753 79999999999999999999999999999998874
|
| >1mzh_A Deoxyribose-phosphate aldolase; alpha-beta barrel, structural genomics, PSI, protein structure initiative; 2.00A {Aquifex aeolicus} SCOP: c.1.10.1 | Back alignment and structure |
|---|
Probab=99.08 E-value=2.1e-09 Score=98.19 Aligned_cols=90 Identities=24% Similarity=0.264 Sum_probs=71.8
Q ss_pred CHHHHHHHHHhcCCCEEEEec-----cCHHH--------HHcCCcEEEEcCCCccCCCCCcchHHHHHHHHHHcCCCceE
Q 017781 213 SWKDVKWLQTITKLPILVKGV-----LTAED--------VQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPV 279 (366)
Q Consensus 213 ~~~~i~~lr~~~~~pv~vK~v-----~~~~d--------~~aGad~I~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~i~v 279 (366)
..+.++++++.++ |+++|.+ .+.++ .++|+|+|..+ +|. ..+..+++.+..+++.+++++||
T Consensus 104 ~~~~i~~v~~a~~-pv~vKvi~e~~~l~~~~~~~~a~~a~eaGad~I~ts-tg~---~~gga~~~~i~~v~~~v~~~ipV 178 (225)
T 1mzh_A 104 VVEELKEIFRETP-SAVHKVIVETPYLNEEEIKKAVEICIEAGADFIKTS-TGF---APRGTTLEEVRLIKSSAKGRIKV 178 (225)
T ss_dssp HHHHHHHHHHTCT-TSEEEEECCGGGCCHHHHHHHHHHHHHHTCSEEECC-CSC---SSSCCCHHHHHHHHHHHTTSSEE
T ss_pred HHHHHHHHHHHhc-CceEEEEEeCCCCCHHHHHHHHHHHHHhCCCEEEEC-CCC---CCCCCCHHHHHHHHHHhCCCCcE
Confidence 4456899999888 9999984 34443 88999999544 332 12335788888888888778999
Q ss_pred EEecCCCCHHHHHHHHHhCcCEEEecHH
Q 017781 280 FLDGGVRRGTDVFKALALGASGIFIGRP 307 (366)
Q Consensus 280 i~~GGI~~~~dv~kalalGAd~V~igr~ 307 (366)
+++|||++++|+.+++.+|||.|++++.
T Consensus 179 ia~GGI~t~~da~~~l~aGA~~iG~s~~ 206 (225)
T 1mzh_A 179 KASGGIRDLETAISMIEAGADRIGTSSG 206 (225)
T ss_dssp EEESSCCSHHHHHHHHHTTCSEEEESCH
T ss_pred EEECCCCCHHHHHHHHHhCchHHHHccH
Confidence 9999999999999999999998888764
|
| >2uv8_G Fatty acid synthase subunit beta (FAS1); fatty acid biosynthesis, malonyl/palmitoyl transferase, phosphopantetheine, transferase; HET: GVL FMN; 3.10A {Saccharomyces cerevisiae} PDB: 2vkz_G* 3hmj_G* | Back alignment and structure |
|---|
Probab=99.07 E-value=7.5e-10 Score=127.02 Aligned_cols=189 Identities=14% Similarity=0.166 Sum_probs=122.7
Q ss_pred eeEcCcccCCceEecccccccccCChhhHHHHHHHHHcCCceecCCCCCCCHHHHh-------ccC--CCceEEEeeecC
Q 017781 63 TTVLGFKISMPIMIAPTAMQKMAHPEGEYATARAASAAGTIMTLSSWSTSSVEEVA-------STG--PGIRFFQLYVYK 133 (366)
Q Consensus 63 t~l~g~~l~~Pi~iApm~~~~l~~~~~e~~la~aa~~~G~~~~vs~~~~~~~e~i~-------~~~--~~~~~~Qly~~~ 133 (366)
|+++| + .||+.+||+... .+..++.++.++|....+...+..+.|++. +.. +.++.+++....
T Consensus 584 t~llg-~--~PIi~~gM~~~~-----~~~~lvaAvsnAGglg~l~~~~~~~~e~l~~~I~~~~~~t~~~~~~gvN~~~~~ 655 (2051)
T 2uv8_G 584 SKLIG-R--PPLLVPGMTPCT-----VSPDFVAATTNAGYTIELAGGGYFSAAGMTAAIDSVVSQIEKGSTFGINLIYVN 655 (2051)
T ss_dssp HHHHS-S--CSEEECCCHHHH-----TCHHHHHHHHHTTCEEEEEGGGCCSHHHHHHHHHHHHHHSCTTCCEEEEEETTC
T ss_pred HHhhC-c--cceecCCCcccc-----ccHHHHHHHHcCCcEEEEccCCCCCHHHHHHHHHHHHHhcCCCCceEEEEeecC
Confidence 44678 3 799999997322 256799999999999888444444444432 222 256777764332
Q ss_pred CH--HHHHHHHHHHHHcCCCE--EEEecCCCCCcchhHHHhhhcCCCCccccccccccccCCCccccchhhHHHhhhccC
Q 017781 134 DR--NVVAQLVRRAERAGFKA--IALTVDTPRLGRREADIKNRFTLPPFLTLKNFQGLDLGKMDEANDSGLAAYVAGQID 209 (366)
Q Consensus 134 d~--~~~~~~l~ra~~~G~~a--i~vtvd~p~~g~r~~d~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d 209 (366)
.. ..-.++++.+.+.|+.. +.++.+.|
T Consensus 656 ~~~~~~~~~~~~~~~~~gv~i~~v~~~ag~p------------------------------------------------- 686 (2051)
T 2uv8_G 656 PFMLQWGIPLIKELRSKGYPIQFLTIGAGVP------------------------------------------------- 686 (2051)
T ss_dssp TTHHHHHHHHHHHHHHTTCSEEEEEEESSCC-------------------------------------------------
T ss_pred hhhhhhhHHHHHHHHHcCCCcceEEecCCCC-------------------------------------------------
Confidence 21 11227788888888877 43322211
Q ss_pred CCCCHHH-HHHHHHhcCCCEEEEeccCHHH-------HHcCCcEE---EEcCC--CccC--CCCCcchHHHHHHHHHHcC
Q 017781 210 RSLSWKD-VKWLQTITKLPILVKGVLTAED-------VQAGAAGI---IVSNH--GARQ--LDYVPATIMALEEVVKATQ 274 (366)
Q Consensus 210 ~~~~~~~-i~~lr~~~~~pv~vK~v~~~~d-------~~aGad~I---~vs~~--gg~~--~~~~~~~~~~l~~i~~~~~ 274 (366)
.++. ++.+.+ ++++++.....+... .++|+|++ ++.|. ||+. .+...+++..++++++.+
T Consensus 687 ---~~~~~~~~i~~-lG~~vi~~~~~~~~a~~~~~~~~~~g~d~~ii~~~~G~eaGGH~g~~d~~~~~l~l~~~v~~~~- 761 (2051)
T 2uv8_G 687 ---SLEVASEYIET-LGLKYLGLKPGSIDAISQVINIAKAHPNFPIALQWTGGRGGGHHSFEDAHTPMLQMYSKIRRHP- 761 (2051)
T ss_dssp ---CHHHHHHHHHH-SCCSCEEECCCSHHHHHHHHHHHHHSTTSCEEEEECCSSCSEECCSCCSSHHHHHHHHHHTTCT-
T ss_pred ---chhhHHHHHHH-cCCEEEEecCchHHHHHHHHHHHHhCCCceeEEEEEccCcCCCCCcccccccHHHHHHHHHhcC-
Confidence 2222 223333 378877654333322 78899993 33332 3432 123355667789998887
Q ss_pred CCceEEEecCCCCHHHHHHHH-----------HhCcCEEEecHHHHHHhhh
Q 017781 275 GRIPVFLDGGVRRGTDVFKAL-----------ALGASGIFIGRPVVYSLAA 314 (366)
Q Consensus 275 ~~i~vi~~GGI~~~~dv~kal-----------alGAd~V~igr~~l~~l~~ 314 (366)
++|||+.|||.+|.+++.|| +||||+|+||+.||-+-.+
T Consensus 762 -~ipviaaGGi~dg~~~~aaL~g~w~~~~g~~~lgadGv~~GTrf~~t~Ea 811 (2051)
T 2uv8_G 762 -NIMLIFGSGFGSADDTYPYLTGEWSTKFDYPPMPFDGFLFGSRVMIAKEV 811 (2051)
T ss_dssp -TBCCEEESSCCSHHHHTHHHHTCGGGTTTCCCCCCSCEECSGGGTTSTTS
T ss_pred -CceEEEeCCCCCHHHHHHHHccccccccCccCCCCceeeechHHHhCccc
Confidence 89999999999999999999 8999999999999876444
|
| >3l5l_A Xenobiotic reductase A; TIM barrel, oxidoreductase; HET: BU3 FMN; 1.03A {Pseudomonas putida} SCOP: c.1.4.0 PDB: 3l5m_A* 3n19_B* 3n16_A* 3l68_A* 3l67_A* 3l65_A* 3l66_A* 3n14_A* 2h8z_A* 2h90_A* 2h8x_A* | Back alignment and structure |
|---|
Probab=99.03 E-value=1.1e-09 Score=106.83 Aligned_cols=97 Identities=18% Similarity=0.131 Sum_probs=76.8
Q ss_pred CCHHHHHHHHHhc--CCCEEEEecc---------CHHH--------HHcCCcEEEEcCCCccC---CCCCc-chHHHHHH
Q 017781 212 LSWKDVKWLQTIT--KLPILVKGVL---------TAED--------VQAGAAGIIVSNHGARQ---LDYVP-ATIMALEE 268 (366)
Q Consensus 212 ~~~~~i~~lr~~~--~~pv~vK~v~---------~~~d--------~~aGad~I~vs~~gg~~---~~~~~-~~~~~l~~ 268 (366)
+..+.++.+|+.+ +.||.+|... +.++ .++|+|+|.+++.+-.. ...++ ..++.+..
T Consensus 210 ~~~eiv~aVr~avg~d~pV~vRis~~~~~~~G~~~~~~~~~la~~L~~~Gvd~i~vs~g~~~~~~~~~~~~~~~~~~~~~ 289 (363)
T 3l5l_A 210 FLLETLAAVREVWPENLPLTARFGVLEYDGRDEQTLEESIELARRFKAGGLDLLSVSVGFTIPDTNIPWGPAFMGPIAER 289 (363)
T ss_dssp HHHHHHHHHHTTSCTTSCEEEEEEEECSSSCHHHHHHHHHHHHHHHHHTTCCEEEEEECCCSSCCCCCCCTTTTHHHHHH
T ss_pred HHHHHHHHHHHHcCCCceEEEEecchhcCCCCCCCHHHHHHHHHHHHHcCCCEEEEecCccccccccCCCcchhHHHHHH
Confidence 4678899999998 5899999763 2233 78999999998742111 11222 24677788
Q ss_pred HHHHcCCCceEEEecCCCCHHHHHHHHHhC-cCEEEecHHHHH
Q 017781 269 VVKATQGRIPVFLDGGVRRGTDVFKALALG-ASGIFIGRPVVY 310 (366)
Q Consensus 269 i~~~~~~~i~vi~~GGI~~~~dv~kalalG-Ad~V~igr~~l~ 310 (366)
+++.+ ++|||+.|||++++++.++|+.| ||+|++||+++.
T Consensus 290 ir~~~--~iPVi~~GgI~s~e~a~~~l~~G~aD~V~iGR~~la 330 (363)
T 3l5l_A 290 VRREA--KLPVTSAWGFGTPQLAEAALQANQLDLVSVGRAHLA 330 (363)
T ss_dssp HHHHH--TCCEEECSSTTSHHHHHHHHHTTSCSEEECCHHHHH
T ss_pred HHHHc--CCcEEEeCCCCCHHHHHHHHHCCCccEEEecHHHHh
Confidence 88888 79999999999999999999999 999999999986
|
| >1xm3_A Thiazole biosynthesis protein THIG; structural genomics, protein structure initiative, PSI, NESG, northeast structural genomics consortium; 1.80A {Bacillus subtilis} SCOP: c.1.31.1 PDB: 1tyg_A | Back alignment and structure |
|---|
Probab=98.99 E-value=5.2e-08 Score=90.98 Aligned_cols=195 Identities=13% Similarity=0.108 Sum_probs=110.5
Q ss_pred ceeEcCcccCCceEecccccccccCChhhHHHHHHHHHcCCcee-cCC-CC---CCCHHHHhccCC---CceEEEeeecC
Q 017781 62 NTTVLGFKISMPIMIAPTAMQKMAHPEGEYATARAASAAGTIMT-LSS-WS---TSSVEEVASTGP---GIRFFQLYVYK 133 (366)
Q Consensus 62 st~l~g~~l~~Pi~iApm~~~~l~~~~~e~~la~aa~~~G~~~~-vs~-~~---~~~~e~i~~~~~---~~~~~Qly~~~ 133 (366)
.++|.|++|.+|++++.-+. |+.+ .+.++..+.|+-++ ++- .+ ..+++++.+..+ .+.+.+.....
T Consensus 3 ~~~i~~~~~~~~~~~~t~g~-----p~~~-~~~~~l~~~Gad~ielg~pr~~~~g~~~~~~~~~l~~~~~~~~pn~~~~~ 76 (264)
T 1xm3_A 3 MLTIGGKSFQSRLLLGTGKY-----PSFD-IQKEAVAVSESDILTFAVRRMNIFEASQPNFLEQLDLSKYTLLPNTAGAS 76 (264)
T ss_dssp CEEETTEEESCCEEEECSCS-----SCHH-HHHHHHHHHTCSEEEEETTSSTTC-------CTTCCGGGSEEEEECTTCS
T ss_pred CeEECCEEecCCCEEEecCC-----CCHH-HHHHHHHHcCCeEEEEcccccccCCCCHHHHHHHHHhcCCeEcCCccccC
Confidence 46799999999999998654 4333 33467777787655 221 11 123344433322 22223432224
Q ss_pred CHHHHHHHHHHHHHcCCCEEEEecCCCCCcchhHHHhhhcCCCCccccccccccccCCCccccchhhHHHhhhccCCCCC
Q 017781 134 DRNVVAQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLTLKNFQGLDLGKMDEANDSGLAAYVAGQIDRSLS 213 (366)
Q Consensus 134 d~~~~~~~l~ra~~~G~~ai~vtvd~p~~g~r~~d~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~ 213 (366)
+.+.....++.++++|...+ +.++.... .|. .....
T Consensus 77 ~~~~~~~f~~~a~~agg~~~-i~l~i~~d------------~~~-------------------------------~~~e~ 112 (264)
T 1xm3_A 77 TAEEAVRIARLAKASGLCDM-IKVEVIGC------------SRS-------------------------------LLPDP 112 (264)
T ss_dssp SHHHHHHHHHHHHHTTCCSS-EEECCBCC------------TTT-------------------------------CCBCH
T ss_pred CHHHHHHHHHHHHHcCCCCe-EEEeecCC------------Ccc-------------------------------cccch
Confidence 44443455666777643322 22332100 000 00111
Q ss_pred HHHHHHHHHhc--CCCEEEEeccCHHH----HHcCCcEEEEcCC-CccCCCCCcchHHHHHHHHHHcCCCceEEEecCCC
Q 017781 214 WKDVKWLQTIT--KLPILVKGVLTAED----VQAGAAGIIVSNH-GARQLDYVPATIMALEEVVKATQGRIPVFLDGGVR 286 (366)
Q Consensus 214 ~~~i~~lr~~~--~~pv~vK~v~~~~d----~~aGad~I~vs~~-gg~~~~~~~~~~~~l~~i~~~~~~~i~vi~~GGI~ 286 (366)
.+.++..++.+ ++.++.-...+.+. .++|+|+|...+. .|.. .+....+.+..+++.. ++||++.|||+
T Consensus 113 ~~~~~~a~~~~~~g~~vi~~~~~~~~~a~~~~~~gad~v~~~~~~~Gt~--~~~~~~~~l~~i~~~~--~iPviv~gGI~ 188 (264)
T 1xm3_A 113 VETLKASEQLLEEGFIVLPYTSDDVVLARKLEELGVHAIMPGASPIGSG--QGILNPLNLSFIIEQA--KVPVIVDAGIG 188 (264)
T ss_dssp HHHHHHHHHHHHTTCCEEEEECSCHHHHHHHHHHTCSCBEECSSSTTCC--CCCSCHHHHHHHHHHC--SSCBEEESCCC
T ss_pred HHHHHHHHHHHCCCeEEEEEcCCCHHHHHHHHHhCCCEEEECCcccCCC--CCCCCHHHHHHHHhcC--CCCEEEEeCCC
Confidence 23455565543 44555444456555 7889999944221 1221 1223466788887765 89999999999
Q ss_pred CHHHHHHHHHhCcCEEEecHHHHH
Q 017781 287 RGTDVFKALALGASGIFIGRPVVY 310 (366)
Q Consensus 287 ~~~dv~kalalGAd~V~igr~~l~ 310 (366)
+++|+.+++++|||+|.+|++++.
T Consensus 189 t~eda~~~~~~GAdgViVGSAi~~ 212 (264)
T 1xm3_A 189 SPKDAAYAMELGADGVLLNTAVSG 212 (264)
T ss_dssp SHHHHHHHHHTTCSEEEESHHHHT
T ss_pred CHHHHHHHHHcCCCEEEEcHHHhC
Confidence 999999999999999999999865
|
| >4ab4_A Xenobiotic reductase B; oxidoreductase, OLD yellow enzyme; HET: FMN TNL EDO; 1.50A {Pseudomonas putida KT2440} | Back alignment and structure |
|---|
Probab=98.93 E-value=3.9e-09 Score=102.88 Aligned_cols=89 Identities=18% Similarity=0.052 Sum_probs=71.5
Q ss_pred CCCHHHHHHHHHhcC-CCEEEEeccC-----------HHH--------HHcCCcEEEEcCCCccCCCCCcchHHHHHHHH
Q 017781 211 SLSWKDVKWLQTITK-LPILVKGVLT-----------AED--------VQAGAAGIIVSNHGARQLDYVPATIMALEEVV 270 (366)
Q Consensus 211 ~~~~~~i~~lr~~~~-~pv~vK~v~~-----------~~d--------~~aGad~I~vs~~gg~~~~~~~~~~~~l~~i~ 270 (366)
.+..+.++.+|+.++ -||.+|.... .++ .++|+|+|.+++.. .++ +.+.+++
T Consensus 204 rf~~eiv~aVr~~vg~~~v~vRls~~~~~~g~~~~~~~~~~~~la~~l~~~Gvd~i~v~~~~-----~~~---~~~~~ik 275 (362)
T 4ab4_A 204 RLLLEVTDAAIEVWGAQRVGVHLAPRADAHDMGDADRAETFTYVARELGKRGIAFICSRERE-----ADD---SIGPLIK 275 (362)
T ss_dssp HHHHHHHHHHHHHHCGGGEEEEECTTCCSSSCCCTTHHHHHHHHHHHHHHTTCSEEEEECCC-----CTT---CCHHHHH
T ss_pred HHHHHHHHHHHHhcCCCceEEEeeccccccccCCCCcHHHHHHHHHHHHHhCCCEEEECCCC-----CCH---HHHHHHH
Confidence 356788999999984 3999997642 222 78999999998743 122 3456777
Q ss_pred HHcCCCceEEEecCCCCHHHHHHHHHhC-cCEEEecHHHHH
Q 017781 271 KATQGRIPVFLDGGVRRGTDVFKALALG-ASGIFIGRPVVY 310 (366)
Q Consensus 271 ~~~~~~i~vi~~GGI~~~~dv~kalalG-Ad~V~igr~~l~ 310 (366)
+.+ ++|||+.||| +++++.++|+.| ||+|++||+++.
T Consensus 276 ~~~--~iPvi~~Ggi-t~e~a~~~l~~g~aD~V~iGR~~la 313 (362)
T 4ab4_A 276 EAF--GGPYIVNERF-DKASANAALASGKADAVAFGVPFIA 313 (362)
T ss_dssp HHH--CSCEEEESSC-CHHHHHHHHHTTSCSEEEESHHHHH
T ss_pred HHC--CCCEEEeCCC-CHHHHHHHHHcCCccEEEECHHhHh
Confidence 777 7899999999 999999999998 999999999986
|
| >1yxy_A Putative N-acetylmannosamine-6-phosphate 2-epimer; structural genomics, epimerase, PSI, structure initiative; 1.60A {Streptococcus pyogenes} SCOP: c.1.2.5 | Back alignment and structure |
|---|
Probab=98.93 E-value=2.8e-08 Score=90.62 Aligned_cols=165 Identities=17% Similarity=0.169 Sum_probs=106.1
Q ss_pred hHHHHHHHHHcCCceecCCCCCCCHHHHhccCCCceEEE----------eeecCCHHHHHHHHHHHHHcCCCEEEEecCC
Q 017781 90 EYATARAASAAGTIMTLSSWSTSSVEEVASTGPGIRFFQ----------LYVYKDRNVVAQLVRRAERAGFKAIALTVDT 159 (366)
Q Consensus 90 e~~la~aa~~~G~~~~vs~~~~~~~e~i~~~~~~~~~~Q----------ly~~~d~~~~~~~l~ra~~~G~~ai~vtvd~ 159 (366)
-..+++++.+.|+..+.- .+...++.+++....|. +. ++... ..+.++.+.++|++.+.++...
T Consensus 38 ~~~~a~~~~~~G~~~i~~-~~~~~i~~i~~~~~~p~-i~~~~~~~~~~~~~i~~----~~~~i~~~~~~Gad~V~l~~~~ 111 (234)
T 1yxy_A 38 MPLMAKAAQEAGAVGIRA-NSVRDIKEIQAITDLPI-IGIIKKDYPPQEPFITA----TMTEVDQLAALNIAVIAMDCTK 111 (234)
T ss_dssp HHHHHHHHHHHTCSEEEE-ESHHHHHHHHTTCCSCE-EEECBCCCTTSCCCBSC----SHHHHHHHHTTTCSEEEEECCS
T ss_pred HHHHHHHHHHCCCcEeec-CCHHHHHHHHHhCCCCE-EeeEcCCCCccccccCC----hHHHHHHHHHcCCCEEEEcccc
Confidence 468999999999876531 11122344544443332 22 12111 2345677888999988765421
Q ss_pred CCCcchhHHHhhhcCCCCccccccccccccCCCccccchhhHHHhhhccCCCCCHHHHHHHHHhc-CCCEEEEeccCHHH
Q 017781 160 PRLGRREADIKNRFTLPPFLTLKNFQGLDLGKMDEANDSGLAAYVAGQIDRSLSWKDVKWLQTIT-KLPILVKGVLTAED 238 (366)
Q Consensus 160 p~~g~r~~d~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~i~~lr~~~-~~pv~vK~v~~~~d 238 (366)
-. -| +.....+.++.+|+.+ +.++++ .+.+.++
T Consensus 112 ~~-------------~~--------------------------------~~~~~~~~i~~i~~~~~~~~v~~-~~~t~~e 145 (234)
T 1yxy_A 112 RD-------------RH--------------------------------DGLDIASFIRQVKEKYPNQLLMA-DISTFDE 145 (234)
T ss_dssp SC-------------CT--------------------------------TCCCHHHHHHHHHHHCTTCEEEE-ECSSHHH
T ss_pred cC-------------CC--------------------------------CCccHHHHHHHHHHhCCCCeEEE-eCCCHHH
Confidence 00 00 0012346788899877 556554 4566666
Q ss_pred ----HHcCCcEE--EEcCCC-ccCCCCCcchHHHHHHHHHHcCCCceEEEecCCCCHHHHHHHHHhCcCEEEecHHHHH
Q 017781 239 ----VQAGAAGI--IVSNHG-ARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFIGRPVVY 310 (366)
Q Consensus 239 ----~~aGad~I--~vs~~g-g~~~~~~~~~~~~l~~i~~~~~~~i~vi~~GGI~~~~dv~kalalGAd~V~igr~~l~ 310 (366)
.++|+|+| .+.+.. +.+ ....+.++.+.++++. ++||+++|||++.+|+.+++++|||+|++|++++.
T Consensus 146 a~~a~~~Gad~i~~~v~g~~~~~~-~~~~~~~~~i~~~~~~---~ipvia~GGI~s~~~~~~~~~~Gad~v~vGsal~~ 220 (234)
T 1yxy_A 146 GLVAHQAGIDFVGTTLSGYTPYSR-QEAGPDVALIEALCKA---GIAVIAEGKIHSPEEAKKINDLGVAGIVVGGAITR 220 (234)
T ss_dssp HHHHHHTTCSEEECTTTTSSTTSC-CSSSCCHHHHHHHHHT---TCCEEEESCCCSHHHHHHHHTTCCSEEEECHHHHC
T ss_pred HHHHHHcCCCEEeeeccccCCCCc-CCCCCCHHHHHHHHhC---CCCEEEECCCCCHHHHHHHHHCCCCEEEEchHHhC
Confidence 89999999 455432 221 1223467778877764 69999999999999999999999999999998753
|
| >3gka_A N-ethylmaleimide reductase; decode biostructures, ssgcid, niaid, targetdb bupsa00093A, structural genomics; HET: FMN; 2.30A {Burkholderia pseudomallei} SCOP: c.1.4.0 | Back alignment and structure |
|---|
Probab=98.92 E-value=5e-09 Score=102.07 Aligned_cols=89 Identities=13% Similarity=-0.013 Sum_probs=71.7
Q ss_pred CCCHHHHHHHHHhcCC-CEEEEeccC-----------HHH--------HHcCCcEEEEcCCCccCCCCCcchHHHHHHHH
Q 017781 211 SLSWKDVKWLQTITKL-PILVKGVLT-----------AED--------VQAGAAGIIVSNHGARQLDYVPATIMALEEVV 270 (366)
Q Consensus 211 ~~~~~~i~~lr~~~~~-pv~vK~v~~-----------~~d--------~~aGad~I~vs~~gg~~~~~~~~~~~~l~~i~ 270 (366)
.+..+.++.+|+.++. ||.+|.... .++ .++|+|+|.+++.. .++ +.+.+++
T Consensus 212 rf~~evv~aVr~~vg~~~v~vRls~~~~~~g~~~~~~~~~~~~la~~l~~~Gvd~i~v~~~~-----~~~---~~~~~ik 283 (361)
T 3gka_A 212 RLLLEVVDAAIDVWSAARVGVHLAPRGDAHTMGDSDPAATFGHVARELGRRRIAFLFARESF-----GGD---AIGQQLK 283 (361)
T ss_dssp HHHHHHHHHHHHHHCGGGEEEEECTTCCSSSCCCSCHHHHHHHHHHHHHHTTCSEEEEECCC-----STT---CCHHHHH
T ss_pred HHHHHHHHHHHHHcCCCeEEEecccccccCCCCCCCcHHHHHHHHHHHHHcCCCEEEECCCC-----CCH---HHHHHHH
Confidence 4567889999999843 999997642 222 78999999998743 122 3456777
Q ss_pred HHcCCCceEEEecCCCCHHHHHHHHHhC-cCEEEecHHHHH
Q 017781 271 KATQGRIPVFLDGGVRRGTDVFKALALG-ASGIFIGRPVVY 310 (366)
Q Consensus 271 ~~~~~~i~vi~~GGI~~~~dv~kalalG-Ad~V~igr~~l~ 310 (366)
+.+ ++|||+.||| +++++.++|+.| ||+|++||+++.
T Consensus 284 ~~~--~iPvi~~Ggi-t~e~a~~~l~~G~aD~V~iGR~~la 321 (361)
T 3gka_A 284 AAF--GGPFIVNENF-TLDSAQAALDAGQADAVAWGKLFIA 321 (361)
T ss_dssp HHH--CSCEEEESSC-CHHHHHHHHHTTSCSEEEESHHHHH
T ss_pred HHc--CCCEEEeCCC-CHHHHHHHHHcCCccEEEECHHhHh
Confidence 777 7899999999 999999999998 999999999986
|
| >1rd5_A Tryptophan synthase alpha chain, chloroplast; hydroxamic acid, diboa, dimboa, indole, indole-glycerol-PHOS lyase; 2.02A {Zea mays} SCOP: c.1.2.4 PDB: 1tjr_A | Back alignment and structure |
|---|
Probab=98.85 E-value=3.4e-07 Score=85.02 Aligned_cols=70 Identities=27% Similarity=0.316 Sum_probs=51.8
Q ss_pred hHHHHHHHHHHcCCCceEEEecCCCCHHHHHHHHHhCcCEEEecHHHHHHhhh-cCHHHHHHHHHHHHHHHHH
Q 017781 262 TIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFIGRPVVYSLAA-EGEKGVRRVLEMLREEFEL 333 (366)
Q Consensus 262 ~~~~l~~i~~~~~~~i~vi~~GGI~~~~dv~kalalGAd~V~igr~~l~~l~~-~G~~gv~~~~~~l~~el~~ 333 (366)
..+.+.++++.. ++||++.|||++++++.+++.+|||+|.+|+++...... ..++...+.+..+.++|+.
T Consensus 189 ~~~~i~~v~~~~--~~pI~vgGGI~~~e~~~~~~~~GAdgvvVGSai~~~~~~~~~~~~~~~~~~~~~~~l~~ 259 (262)
T 1rd5_A 189 VESLIQEVKKVT--NKPVAVGFGISKPEHVKQIAQWGADGVIIGSAMVRQLGEAASPKQGLRRLEEYARGMKN 259 (262)
T ss_dssp HHHHHHHHHHHC--SSCEEEESCCCSHHHHHHHHHTTCSEEEECHHHHHHHHSSSSHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhhc--CCeEEEECCcCCHHHHHHHHHcCCCEEEEChHHHhHHHhccChhHHHHHHHHHHHHHHH
Confidence 445777887776 799999999999999999999999999999999876532 2223222344455555544
|
| >1wv2_A Thiazole moeity, thiazole biosynthesis protein THIG; structural genomics, protein structure initiative, PSI; 2.90A {Pseudomonas aeruginosa} SCOP: c.1.31.1 | Back alignment and structure |
|---|
Probab=98.82 E-value=3.6e-08 Score=90.62 Aligned_cols=195 Identities=14% Similarity=0.164 Sum_probs=113.3
Q ss_pred ceeEcCcccCCceEecccccccccCChhhHHHHHHHHHcCCceecCCCC--C----CCHHHHhccCCCceEEEeeec---
Q 017781 62 NTTVLGFKISMPIMIAPTAMQKMAHPEGEYATARAASAAGTIMTLSSWS--T----SSVEEVASTGPGIRFFQLYVY--- 132 (366)
Q Consensus 62 st~l~g~~l~~Pi~iApm~~~~l~~~~~e~~la~aa~~~G~~~~vs~~~--~----~~~e~i~~~~~~~~~~Qly~~--- 132 (366)
..+|.|++|..-+++.-=-+ + -...+.++....|+-++.=... + ...+.+.+..+. .-+.+-++
T Consensus 10 ~l~i~~~~f~SRl~~Gtgky-----~-~~~~~~~a~~asg~e~vtva~rR~~~~~~~~~~~~~~~i~~-~~~~~lpNTag 82 (265)
T 1wv2_A 10 PFVIAGRTYGSRLLVGTGKY-----K-DLDETRRAIEASGAEIVTVAVRRTNIGQNPDEPNLLDVIPP-DRYTILPNTAG 82 (265)
T ss_dssp CEEETTEEESCCEEECCSCS-----S-SHHHHHHHHHHSCCSEEEEEGGGCCC-------------CT-TTSEEEEECTT
T ss_pred CeEECCEEeecceEEecCCC-----C-CHHHHHHHHHHhCCCeEEEEEEeeccccCCCcchHHhhhhh-cCCEECCcCCC
Confidence 37899999999999865221 1 1346777778888877631110 1 112333333221 01222222
Q ss_pred -CCHHHHHHHHHHHHH-c-CCCEEEEecCCCCCcchhHHHhhhcCCCCccccccccccccCCCccccchhhHHHhhhccC
Q 017781 133 -KDRNVVAQLVRRAER-A-GFKAIALTVDTPRLGRREADIKNRFTLPPFLTLKNFQGLDLGKMDEANDSGLAAYVAGQID 209 (366)
Q Consensus 133 -~d~~~~~~~l~ra~~-~-G~~ai~vtvd~p~~g~r~~d~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d 209 (366)
.+.+..-...+-+++ + |-+.+-+-|-.- + .+.+ .|
T Consensus 83 ~~ta~eAv~~a~lare~~~~~~~iKlEv~~d----~------~~ll--------------------------------pD 120 (265)
T 1wv2_A 83 CYDAVEAVRTCRLARELLDGHNLVKLEVLAD----Q------KTLF--------------------------------PN 120 (265)
T ss_dssp CCSHHHHHHHHHHHHTTTTSCCEEEECCBSC----T------TTCC--------------------------------BC
T ss_pred CCCHHHHHHHHHHHHHHcCCCCeEEEEeecC----c------cccC--------------------------------cC
Confidence 333333344455666 4 445544443211 0 0101 12
Q ss_pred CCCCHHHHHHHHHhcCCCEEEEeccCHHH----HHcCCcEEEEcCC-CccCCCCCcchHHHHHHHHHHcCCCceEEEecC
Q 017781 210 RSLSWKDVKWLQTITKLPILVKGVLTAED----VQAGAAGIIVSNH-GARQLDYVPATIMALEEVVKATQGRIPVFLDGG 284 (366)
Q Consensus 210 ~~~~~~~i~~lr~~~~~pv~vK~v~~~~d----~~aGad~I~vs~~-gg~~~~~~~~~~~~l~~i~~~~~~~i~vi~~GG 284 (366)
+..+.+..+.+.+. +..++.-...++.. .++|+++|...+. -|. ..+..+++.|..+++.. ++|||++||
T Consensus 121 ~~~tv~aa~~L~~~-Gf~Vlpy~~dd~~~akrl~~~G~~aVmPlg~pIGs--G~Gi~~~~lI~~I~e~~--~vPVI~eGG 195 (265)
T 1wv2_A 121 VVETLKAAEQLVKD-GFDVMVYTSDDPIIARQLAEIGCIAVMPLAGLIGS--GLGICNPYNLRIILEEA--KVPVLVDAG 195 (265)
T ss_dssp HHHHHHHHHHHHTT-TCEEEEEECSCHHHHHHHHHSCCSEEEECSSSTTC--CCCCSCHHHHHHHHHHC--SSCBEEESC
T ss_pred HHHHHHHHHHHHHC-CCEEEEEeCCCHHHHHHHHHhCCCEEEeCCccCCC--CCCcCCHHHHHHHHhcC--CCCEEEeCC
Confidence 22344555555543 55555445556654 8999999976443 121 12456788899898866 899999999
Q ss_pred CCCHHHHHHHHHhCcCEEEecHHHHH
Q 017781 285 VRRGTDVFKALALGASGIFIGRPVVY 310 (366)
Q Consensus 285 I~~~~dv~kalalGAd~V~igr~~l~ 310 (366)
|.+++|+.+++.+|||+|++|+.+..
T Consensus 196 I~TPsDAa~AmeLGAdgVlVgSAI~~ 221 (265)
T 1wv2_A 196 VGTASDAAIAMELGCEAVLMNTAIAH 221 (265)
T ss_dssp CCSHHHHHHHHHHTCSEEEESHHHHT
T ss_pred CCCHHHHHHHHHcCCCEEEEChHHhC
Confidence 99999999999999999999998864
|
| >3vnd_A TSA, tryptophan synthase alpha chain; psychrophilic enzyme, cold adaptation; HET: PE8; 2.60A {Shewanella frigidimarina} | Back alignment and structure |
|---|
Probab=98.81 E-value=1.4e-07 Score=88.01 Aligned_cols=149 Identities=15% Similarity=0.171 Sum_probs=95.1
Q ss_pred CHHHHHHHHHHHHHcCCCEEEEecCCCCCcchhHHHhhhcCCCC--ccccccccccccCCCccccchhhHHHhhhccCCC
Q 017781 134 DRNVVAQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFTLPP--FLTLKNFQGLDLGKMDEANDSGLAAYVAGQIDRS 211 (366)
Q Consensus 134 d~~~~~~~l~ra~~~G~~ai~vtvd~p~~g~r~~d~~~~~~~p~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~ 211 (366)
+.+.+.+.++.++++|++.|-+.+ |.. -|. |.... ......+.......
T Consensus 30 ~~~~~~~~~~~l~~~GaD~iElgi--PfS------------DP~aDGp~Iq---------------~a~~~AL~~G~~~~ 80 (267)
T 3vnd_A 30 SPELSLKIIQTLVDNGADALELGF--PFS------------DPLADGPVIQ---------------GANLRSLAAGTTSS 80 (267)
T ss_dssp CHHHHHHHHHHHHHTTCSSEEEEC--CCS------------CCTTCCHHHH---------------HHHHHHHHTTCCHH
T ss_pred CHHHHHHHHHHHHHcCCCEEEECC--CCC------------CCCCCCHHHH---------------HHHHHHHHcCCCHH
Confidence 448899999999999999987643 321 110 00000 01111222111111
Q ss_pred CCHHHHHHHHHh-cCCCEEEEeccCH------HH-----HHcCCcEEEEcCCCcc------------C------------
Q 017781 212 LSWKDVKWLQTI-TKLPILVKGVLTA------ED-----VQAGAAGIIVSNHGAR------------Q------------ 255 (366)
Q Consensus 212 ~~~~~i~~lr~~-~~~pv~vK~v~~~------~d-----~~aGad~I~vs~~gg~------------~------------ 255 (366)
..++.++++|+. .++|+++-+-.++ +. .++|+|++++..-.-. .
T Consensus 81 ~~~~~v~~ir~~~~~~Pivlm~Y~npv~~~g~e~f~~~~~~aGvdgvii~Dlp~ee~~~~~~~~~~~gl~~i~liaP~t~ 160 (267)
T 3vnd_A 81 DCFDIITKVRAQHPDMPIGLLLYANLVFANGIDEFYTKAQAAGVDSVLIADVPVEESAPFSKAAKAHGIAPIFIAPPNAD 160 (267)
T ss_dssp HHHHHHHHHHHHCTTCCEEEEECHHHHHHHCHHHHHHHHHHHTCCEEEETTSCGGGCHHHHHHHHHTTCEEECEECTTCC
T ss_pred HHHHHHHHHHhcCCCCCEEEEecCcHHHHhhHHHHHHHHHHcCCCEEEeCCCCHhhHHHHHHHHHHcCCeEEEEECCCCC
Confidence 235778999987 7899888754333 33 8999999887531100 0
Q ss_pred -------------------CC--CC-c-----chHHHHHHHHHHcCCCceEEEecCCCCHHHHHHHHHhCcCEEEecHHH
Q 017781 256 -------------------LD--YV-P-----ATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFIGRPV 308 (366)
Q Consensus 256 -------------------~~--~~-~-----~~~~~l~~i~~~~~~~i~vi~~GGI~~~~dv~kalalGAd~V~igr~~ 308 (366)
.. .| . ...+.+.++++.. ++||++.|||++++++.+++..|||+|.+|+++
T Consensus 161 ~eri~~i~~~~~gfvY~vS~~GvTG~~~~~~~~~~~~v~~vr~~~--~~pv~vGfGI~~~e~~~~~~~~gADgvVVGSai 238 (267)
T 3vnd_A 161 ADTLKMVSEQGEGYTYLLSRAGVTGTESKAGEPIENILTQLAEFN--APPPLLGFGIAEPEQVRAAIKAGAAGAISGSAV 238 (267)
T ss_dssp HHHHHHHHHHCCSCEEESCCCCCC--------CHHHHHHHHHTTT--CCCEEECSSCCSHHHHHHHHHTTCSEEEECHHH
T ss_pred HHHHHHHHHhCCCcEEEEecCCCCCCccCCcHHHHHHHHHHHHhc--CCCEEEECCcCCHHHHHHHHHcCCCEEEECHHH
Confidence 00 11 1 1235566666554 799999999999999999999999999999999
Q ss_pred HHHhh
Q 017781 309 VYSLA 313 (366)
Q Consensus 309 l~~l~ 313 (366)
+..+.
T Consensus 239 v~~i~ 243 (267)
T 3vnd_A 239 VKIIE 243 (267)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 87664
|
| >3nav_A Tryptophan synthase alpha chain; alpha subunit, structural genomics, CSG center for structural genomics of infectious diseases; 2.10A {Vibrio cholerae o1 biovar el tor} SCOP: c.1.2.4 | Back alignment and structure |
|---|
Probab=98.79 E-value=1.9e-07 Score=87.42 Aligned_cols=150 Identities=18% Similarity=0.224 Sum_probs=96.0
Q ss_pred CCHHHHHHHHHHHHHcCCCEEEEecCCCCCcchhHHHhhhcCCCC--ccccccccccccCCCccccchhhHHHhhhccCC
Q 017781 133 KDRNVVAQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFTLPP--FLTLKNFQGLDLGKMDEANDSGLAAYVAGQIDR 210 (366)
Q Consensus 133 ~d~~~~~~~l~ra~~~G~~ai~vtvd~p~~g~r~~d~~~~~~~p~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~ 210 (366)
.+.+.+.++++.++++|++.|-+.+ |.. -|. |.+ +. .+....+......
T Consensus 31 P~~~~~~~~~~~l~~~GaD~iElGi--PfS------------DP~aDGpv-----------Iq----~a~~rAL~~G~~~ 81 (271)
T 3nav_A 31 PNPEQSLAIMQTLIDAGADALELGM--PFS------------DPLADGPT-----------IQ----GANLRALAAKTTP 81 (271)
T ss_dssp SCHHHHHHHHHHHHHTTCSSEEEEC--CCC------------CGGGCCSH-----------HH----HHHHHHHHTTCCH
T ss_pred CCHHHHHHHHHHHHHcCCCEEEECC--CCC------------CCCCCCHH-----------HH----HHHHHHHHcCCCH
Confidence 4568899999999999999988754 321 010 000 00 0111222221111
Q ss_pred CCCHHHHHHHHHh-cCCCEEEEecc------CHHH-----HHcCCcEEEEcCC---------------Ccc--------C
Q 017781 211 SLSWKDVKWLQTI-TKLPILVKGVL------TAED-----VQAGAAGIIVSNH---------------GAR--------Q 255 (366)
Q Consensus 211 ~~~~~~i~~lr~~-~~~pv~vK~v~------~~~d-----~~aGad~I~vs~~---------------gg~--------~ 255 (366)
...++.++++|+. .++|+++-+-. ..+. .++|+|++++..- |-. .
T Consensus 82 ~~~~~~v~~~r~~~~~~Pivlm~Y~n~v~~~g~~~f~~~~~~aGvdGvIipDlp~ee~~~~~~~~~~~gl~~I~lvap~t 161 (271)
T 3nav_A 82 DICFELIAQIRARNPETPIGLLMYANLVYARGIDDFYQRCQKAGVDSVLIADVPTNESQPFVAAAEKFGIQPIFIAPPTA 161 (271)
T ss_dssp HHHHHHHHHHHHHCTTSCEEEEECHHHHHHTCHHHHHHHHHHHTCCEEEETTSCGGGCHHHHHHHHHTTCEEEEEECTTC
T ss_pred HHHHHHHHHHHhcCCCCCEEEEecCcHHHHHhHHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHHHHcCCeEEEEECCCC
Confidence 2245778999987 68999887532 2233 8899999877431 100 0
Q ss_pred --------------------CC--CCc-----c-hHHHHHHHHHHcCCCceEEEecCCCCHHHHHHHHHhCcCEEEecHH
Q 017781 256 --------------------LD--YVP-----A-TIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFIGRP 307 (366)
Q Consensus 256 --------------------~~--~~~-----~-~~~~l~~i~~~~~~~i~vi~~GGI~~~~dv~kalalGAd~V~igr~ 307 (366)
.. .|. . ..+.+.++++.. ++||++.+||++++++.+++..|||+|.+|++
T Consensus 162 ~~eri~~i~~~~~gfiY~vs~~GvTG~~~~~~~~~~~~v~~vr~~~--~~Pv~vGfGIst~e~~~~~~~~gADgvIVGSA 239 (271)
T 3nav_A 162 SDETLRAVAQLGKGYTYLLSRAGVTGAETKANMPVHALLERLQQFD--APPALLGFGISEPAQVKQAIEAGAAGAISGSA 239 (271)
T ss_dssp CHHHHHHHHHHCCSCEEECCCC--------CCHHHHHHHHHHHHTT--CCCEEECSSCCSHHHHHHHHHTTCSEEEESHH
T ss_pred CHHHHHHHHHHCCCeEEEEeccCCCCcccCCchhHHHHHHHHHHhc--CCCEEEECCCCCHHHHHHHHHcCCCEEEECHH
Confidence 00 111 1 235567776665 79999999999999999999999999999999
Q ss_pred HHHHhh
Q 017781 308 VVYSLA 313 (366)
Q Consensus 308 ~l~~l~ 313 (366)
++..+.
T Consensus 240 iv~~i~ 245 (271)
T 3nav_A 240 VVKIIE 245 (271)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 988764
|
| >3zen_D Fatty acid synthase; transferase, mycolic acid biosynthesis, multifunctional ENZY substrate channeling; HET: FMN; 7.50A {Mycobacterium smegmatis} PDB: 4b3y_A* | Back alignment and structure |
|---|
Probab=98.78 E-value=8.1e-09 Score=122.44 Aligned_cols=189 Identities=19% Similarity=0.243 Sum_probs=115.4
Q ss_pred eEcCcccCCceEecccccccccCChhhHHHHHHHHHcCCceecCCCCCCCHHHH-------hccC--CCceEEEeeecCC
Q 017781 64 TVLGFKISMPIMIAPTAMQKMAHPEGEYATARAASAAGTIMTLSSWSTSSVEEV-------ASTG--PGIRFFQLYVYKD 134 (366)
Q Consensus 64 ~l~g~~l~~Pi~iApm~~~~l~~~~~e~~la~aa~~~G~~~~vs~~~~~~~e~i-------~~~~--~~~~~~Qly~~~d 134 (366)
+++| ..||+.+||++.. + ...|+.+..++|....++.....+.+.+ ++.. +.++.+++.. .+
T Consensus 423 ~~lg---~~PIi~a~M~~~~-s----~~~LaaAVs~AGglG~l~~~g~~~~~~l~~~i~~~r~~~~~~~p~~vNl~~-~~ 493 (3089)
T 3zen_D 423 RLTG---RSPILLAGMTPTT-V----DAKIVAAAANAGHWAELAGGGQVTEQIFNDRIAELETLLEPGRAIQFNTLF-LD 493 (3089)
T ss_dssp HHHS---SCSEEECCCHHHH-T----SHHHHHHHHHTTCEEEECSTTCCSHHHHHHHHHHHHHHSCTTCCCEEEEEC-SC
T ss_pred hhcC---CCCEEeCCCcCCc-C----CHHHHHHHHhCCCceeecCCCCCCHHHHHHHHHHHHHhcCCCCceeechhh-cC
Confidence 3566 6899999997532 1 4579999999999999966544445433 2223 2345555532 23
Q ss_pred HHH------HHHHHHHHHHcC--CCEEEEecCCCCCcchhHHHhhhcCCCCccccccccccccCCCccccchhhHHHhhh
Q 017781 135 RNV------VAQLVRRAERAG--FKAIALTVDTPRLGRREADIKNRFTLPPFLTLKNFQGLDLGKMDEANDSGLAAYVAG 206 (366)
Q Consensus 135 ~~~------~~~~l~ra~~~G--~~ai~vtvd~p~~g~r~~d~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 206 (366)
+.. ..+.++.+.+.| +++++++.+.|.. . +
T Consensus 494 p~~~~~~~g~~~~~~~~~~~g~~vdgv~~~aG~P~~-e-e---------------------------------------- 531 (3089)
T 3zen_D 494 PYLWKLQVGGKRLVQRARQSGAPIDGLVVSAGIPDL-E-E---------------------------------------- 531 (3089)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTCSCCEEEEESSCCCH-H-H----------------------------------------
T ss_pred hhhhhhccCHHHHHHHHHHcCCCceEEEEeCCCCch-h-H----------------------------------------
Confidence 322 146788888999 6678877665521 0 0
Q ss_pred ccCCCCCHHHHHHHHHhcCCCEEEEeccCHHH----HHcCCc------EEEEcCC--CccCCCCCcchHHHH----HHHH
Q 017781 207 QIDRSLSWKDVKWLQTITKLPILVKGVLTAED----VQAGAA------GIIVSNH--GARQLDYVPATIMAL----EEVV 270 (366)
Q Consensus 207 ~~d~~~~~~~i~~lr~~~~~pv~vK~v~~~~d----~~aGad------~I~vs~~--gg~~~~~~~~~~~~l----~~i~ 270 (366)
..+.++.+++. ++.++.=.+.+.++ .+.|+| +|++.+. ||+. +.......+ .+++
T Consensus 532 ------~~~~i~~l~~~-Gi~~i~~~~~t~~~a~~~~~i~~d~~~~~y~vv~~G~eaGGH~--g~~~~~~ll~~~~~~ir 602 (3089)
T 3zen_D 532 ------AVDIIDELNEV-GISHVVFKPGTVEQIRSVIRIAAEVPTKPVIVHIEGGRAGGHH--SWEDLDDLLLATYSELR 602 (3089)
T ss_dssp ------HHHHHTSTTHH-HHCSEEECCCSHHHHHHHHHHHTTSTTSCEEEEECCSSSSEEC--CSCCHHHHHHHHHHHHT
T ss_pred ------hHHHHHHHHHc-CCEEEEEeCCCHHHHHHHHHhhhhcCCCcEEEEEeCCCcCCCC--CcccHHHHHHHHHHHHh
Confidence 00112222221 23333212233332 455556 6777653 3332 122344555 4444
Q ss_pred HHcCCCceEEEecCCCCHHHHHHHH-----------HhCcCEEEecHHHHHHhhh
Q 017781 271 KATQGRIPVFLDGGVRRGTDVFKAL-----------ALGASGIFIGRPVVYSLAA 314 (366)
Q Consensus 271 ~~~~~~i~vi~~GGI~~~~dv~kal-----------alGAd~V~igr~~l~~l~~ 314 (366)
+.. ++|||+.|||.+++++..+| ++|||+|++|+.|+....+
T Consensus 603 ~~~--~iPViaaGGI~d~~~vaaal~g~ws~~~~~p~lGAdGV~vGTrfl~t~Ea 655 (3089)
T 3zen_D 603 SRS--NITICVGGGIGTPERSAEYLSGRWAEVHGYPLMPIDGILVGTAAMATLEA 655 (3089)
T ss_dssp TCT--TEEEEEESSCCCTTTTHHHHHTGGGGTTTCCCCCCSEEECSSTTTTCTTS
T ss_pred hcC--CCeEEEEeCCCCHHHHHHHhccccccccCccCCCCCEEEecHHHHhCccc
Confidence 333 79999999999999999999 9999999999999876544
|
| >3aty_A Tcoye, prostaglandin F2A synthase; alpha/beta barrel, oxidoreductase, flavin mononucleotide; HET: FMN; 1.70A {Trypanosoma cruzi} PDB: 3atz_A* | Back alignment and structure |
|---|
Probab=98.76 E-value=5.7e-08 Score=95.27 Aligned_cols=93 Identities=6% Similarity=-0.125 Sum_probs=71.8
Q ss_pred CCCHHHHHHHHHhcC-CCEEEEeccC-----------HHH--------HHcCCcEEEEcCCCccCCCCCcchHHHHHHHH
Q 017781 211 SLSWKDVKWLQTITK-LPILVKGVLT-----------AED--------VQAGAAGIIVSNHGARQLDYVPATIMALEEVV 270 (366)
Q Consensus 211 ~~~~~~i~~lr~~~~-~pv~vK~v~~-----------~~d--------~~aGad~I~vs~~gg~~~~~~~~~~~~l~~i~ 270 (366)
.+..+.++.+|+.++ .||.+|.... .++ .++|+|+|.+++.+... ...+. + +.+++
T Consensus 228 r~~~eiv~aVr~avg~~~v~vRis~~~~~~~~~~~~~~~~~~~la~~l~~~Gvd~i~v~~~~~~~--~~~~~-~-~~~ir 303 (379)
T 3aty_A 228 QLIYDVTKSVCDAVGSDRVGLRISPLNGVHGMIDSNPEALTKHLCKKIEPLSLAYLHYLRGDMVN--QQIGD-V-VAWVR 303 (379)
T ss_dssp HHHHHHHHHHHHHHCGGGEEEEECTTCCGGGCCCSCHHHHHHHHHHHHGGGCCSEEEEECSCTTS--CCCCC-H-HHHHH
T ss_pred HHHHHHHHHHHHhcCCCeEEEEECcccccccCCCCCCHHHHHHHHHHHHHhCCCEEEEcCCCcCC--CCccH-H-HHHHH
Confidence 356788999999985 4899997642 222 78999999998743111 11122 5 67777
Q ss_pred HHcCCCceEEEecCCCCHHHHHHHHHhC-cCEEEecHHHHH
Q 017781 271 KATQGRIPVFLDGGVRRGTDVFKALALG-ASGIFIGRPVVY 310 (366)
Q Consensus 271 ~~~~~~i~vi~~GGI~~~~dv~kalalG-Ad~V~igr~~l~ 310 (366)
+.+ ++|||+.||| +++++.++|+.| ||+|++||+++.
T Consensus 304 ~~~--~iPvi~~G~i-t~~~a~~~l~~g~aD~V~igR~~l~ 341 (379)
T 3aty_A 304 GSY--SGVKISNLRY-DFEEADQQIREGKVDAVAFGAKFIA 341 (379)
T ss_dssp TTC--CSCEEEESSC-CHHHHHHHHHTTSCSEEEESHHHHH
T ss_pred HHC--CCcEEEECCC-CHHHHHHHHHcCCCeEEEecHHHHh
Confidence 777 7999999999 999999999998 999999999986
|
| >4adt_A Pyridoxine biosynthetic enzyme PDX1 homologue, PU; transferase, pyridoxal 5-phosphate biosynthesis; 2.42A {Plasmodium berghei} PDB: 4adu_A* 4ads_A | Back alignment and structure |
|---|
Probab=98.73 E-value=1.1e-08 Score=97.02 Aligned_cols=84 Identities=25% Similarity=0.397 Sum_probs=65.5
Q ss_pred CCCEEEEeccCHHH----HHcCCcEEEEcCCCccCC-----------------------CC-------CcchHHHHHHHH
Q 017781 225 KLPILVKGVLTAED----VQAGAAGIIVSNHGARQL-----------------------DY-------VPATIMALEEVV 270 (366)
Q Consensus 225 ~~pv~vK~v~~~~d----~~aGad~I~vs~~gg~~~-----------------------~~-------~~~~~~~l~~i~ 270 (366)
+.++++ .+.+.++ .++|+|.|.+.|++|+.. +. ..++++.+++++
T Consensus 125 g~~vvv-~v~~~~Ea~~a~~~Gad~I~v~g~~gTG~~~~~v~h~~~~~~eir~l~~~~~d~L~t~~~~~~~~~~ll~~i~ 203 (297)
T 4adt_A 125 KTPFVC-GCTNLGEALRRISEGASMIRTKGEAGTGNIIEAIKHIRTVNNEIKYLCSLDESEVYNFAKKLRAPIDLILLTR 203 (297)
T ss_dssp SSCEEE-EESSHHHHHHHHHHTCSEEEECCCTTSCCCHHHHHHHHHHHHHHHHHHHSCTTTHHHHHHHHTCCHHHHHHHH
T ss_pred CCeEEE-EeCCHHHHHHHHhCCCCEEEECCCcCCCchHHHHHHHHHhhhhhhhhccccccccccccccCCCCHHHHHHHH
Confidence 567766 5777766 688999999988755321 01 134577888888
Q ss_pred HHcCCCceEE--EecCCCCHHHHHHHHHhCcCEEEecHHHHHH
Q 017781 271 KATQGRIPVF--LDGGVRRGTDVFKALALGASGIFIGRPVVYS 311 (366)
Q Consensus 271 ~~~~~~i~vi--~~GGI~~~~dv~kalalGAd~V~igr~~l~~ 311 (366)
+.+ ++||+ +.|||++++|+.+++.+|||+|++|+.++.+
T Consensus 204 ~~~--~iPVivvA~GGI~t~~dv~~~~~~GAdgVlVGsai~~a 244 (297)
T 4adt_A 204 KLK--RLPVVNFAAGGIATPADAAMCMQLGMDGVFVGSGIFES 244 (297)
T ss_dssp HHT--SCSSEEEEESCCCSHHHHHHHHHTTCSCEEESHHHHTS
T ss_pred Hhc--CCCeEEEecCCCCCHHHHHHHHHcCCCEEEEhHHHHcC
Confidence 876 57765 9999999999999999999999999998753
|
| >1qop_A Tryptophan synthase alpha chain; lyase, carbon-oxygen lyase, tryptophan biosynthesis, pyridoxal phosphate; HET: IPL PLP; 1.4A {Salmonella typhimurium} SCOP: c.1.2.4 PDB: 1k8x_A* 1wbj_A* 2clk_A* 2j9z_A* 3cep_A* 1k8y_A* 1a5s_A* 1a50_A* 1c29_A* 1c8v_A* 1c9d_A* 1bks_A* 1cx9_A* 1fuy_A* 1cw2_A* 1k7e_A* 1k7f_A* 1k7x_A* 1k3u_A* 1k8z_A* ... | Back alignment and structure |
|---|
Probab=98.70 E-value=4.2e-07 Score=84.92 Aligned_cols=49 Identities=20% Similarity=0.285 Sum_probs=43.2
Q ss_pred HHHHHHHHHHcCCCceEEEecCCCCHHHHHHHHHhCcCEEEecHHHHHHhh
Q 017781 263 IMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFIGRPVVYSLA 313 (366)
Q Consensus 263 ~~~l~~i~~~~~~~i~vi~~GGI~~~~dv~kalalGAd~V~igr~~l~~l~ 313 (366)
.+.+.++++.. ++||+++|||++++++.+++..|||+|.+|+.+.....
T Consensus 194 ~~~i~~lr~~~--~~pi~vggGI~t~e~~~~~~~agAD~vVVGSai~~~~~ 242 (268)
T 1qop_A 194 HHLIEKLKEYH--AAPALQGFGISSPEQVSAAVRAGAAGAISGSAIVKIIE 242 (268)
T ss_dssp HHHHHHHHHTT--CCCEEEESSCCSHHHHHHHHHTTCSEEEECHHHHHHHH
T ss_pred HHHHHHHHhcc--CCcEEEECCCCCHHHHHHHHHcCCCEEEEChHHhhhHh
Confidence 56777777765 79999999999999999999999999999999987653
|
| >2zbt_A Pyridoxal biosynthesis lyase PDXS; pyridoxine biosynthesis, structural genomics, NPPSFA; 1.65A {Thermus thermophilus} PDB: 2iss_A* | Back alignment and structure |
|---|
Probab=98.68 E-value=2.5e-08 Score=94.40 Aligned_cols=81 Identities=19% Similarity=0.240 Sum_probs=62.3
Q ss_pred hHHHHHHHHHHcCCCceEE--EecCCCCHHHHHHHHHhCcCEEEecHHHHHHhhhcCHHHHHHHHHHHHHHHHHHHHHcC
Q 017781 262 TIMALEEVVKATQGRIPVF--LDGGVRRGTDVFKALALGASGIFIGRPVVYSLAAEGEKGVRRVLEMLREEFELAMALSG 339 (366)
Q Consensus 262 ~~~~l~~i~~~~~~~i~vi--~~GGI~~~~dv~kalalGAd~V~igr~~l~~l~~~G~~gv~~~~~~l~~el~~~m~~~G 339 (366)
.++.+.++++.. ++|++ ++|||++++|+.+++.+|||+|++|+.++.+ .. ....++.+++.++.++...+
T Consensus 195 ~~~~i~~l~~~~--~~pvi~~a~GGI~~~e~i~~~~~aGadgvvvGsai~~~---~d---p~~~~~~l~~~i~~~~~~~~ 266 (297)
T 2zbt_A 195 PFELVKWVHDHG--RLPVVNFAAGGIATPADAALMMHLGMDGVFVGSGIFKS---GD---PRKRARAIVRAVAHYNDPEV 266 (297)
T ss_dssp CHHHHHHHHHHS--SCSSCEEBCSSCCSHHHHHHHHHTTCSEEEECGGGGGS---SC---HHHHHHHHHHHHHTTTCHHH
T ss_pred hHHHHHHHHHhc--CCCcEEEeeCCCCCHHHHHHHHHcCCCEEEEchHHhCC---CC---HHHHHHHHHHHHHHHhchHh
Confidence 456777777765 68888 9999999999999999999999999998642 11 23456677777776666666
Q ss_pred CCChhhhcccc
Q 017781 340 CRSLKEITRDH 350 (366)
Q Consensus 340 ~~~l~el~~~~ 350 (366)
+.++.++.+..
T Consensus 267 ~~~~~~~~g~~ 277 (297)
T 2zbt_A 267 LAEVSEDLGEP 277 (297)
T ss_dssp HHHHHTTCCCC
T ss_pred hhHHHHhcCce
Confidence 66777777655
|
| >1geq_A Tryptophan synthase alpha-subunit; hyperthermophIle, pyrococ furiosus, X-RAY analysis, stability, calorimetry, lyase; 2.00A {Pyrococcus furiosus} SCOP: c.1.2.4 PDB: 1wdw_A* 2dzu_A 2dzp_A 2e09_A 2dzw_A 2dzs_A 2dzv_A 2dzt_A 2dzx_A | Back alignment and structure |
|---|
Probab=98.66 E-value=2.7e-07 Score=84.76 Aligned_cols=67 Identities=24% Similarity=0.337 Sum_probs=50.5
Q ss_pred hHHHHHHHHHHcCCCceEEEecCCCCHHHHHHHHHhCcCEEEecHHHHHHhhhcCHHHHHHHHHHHHHHH
Q 017781 262 TIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFIGRPVVYSLAAEGEKGVRRVLEMLREEF 331 (366)
Q Consensus 262 ~~~~l~~i~~~~~~~i~vi~~GGI~~~~dv~kalalGAd~V~igr~~l~~l~~~G~~gv~~~~~~l~~el 331 (366)
.++.+.++++.+ ++||+++|||++++++.+++.+|||+|.+|+.++.....+. +.+.++++.+++.|
T Consensus 179 ~~~~i~~l~~~~--~~pi~~~GGI~~~e~i~~~~~~Gad~vivGsai~~~~~~~~-~~~~~~~~~~~~~~ 245 (248)
T 1geq_A 179 AYDLLRRAKRIC--RNKVAVGFGVSKREHVVSLLKEGANGVVVGSALVKIIGEKG-REATEFLKKKVEEL 245 (248)
T ss_dssp HHHHHHHHHHHC--SSCEEEESCCCSHHHHHHHHHTTCSEEEECHHHHHHHHHHG-GGCHHHHHHHHHHH
T ss_pred HHHHHHHHHhhc--CCCEEEEeecCCHHHHHHHHHcCCCEEEEcHHHHhhHhhCh-HHHHHHHHHHHHHh
Confidence 356777777776 79999999999999999999999999999999876532111 34455555554444
|
| >3o07_A Pyridoxine biosynthesis protein SNZ1; (beta/alpha)8-barrel, pyridoxal 5-phosphate synthase, PLP G3 SNO1, biosynthetic protein; HET: 1GP; 1.80A {Saccharomyces cerevisiae} PDB: 3o06_A 3o05_A* 3fem_A | Back alignment and structure |
|---|
Probab=98.65 E-value=2.1e-07 Score=86.25 Aligned_cols=48 Identities=29% Similarity=0.621 Sum_probs=41.4
Q ss_pred chHHHHHHHHHHcCCCceE--EEecCCCCHHHHHHHHHhCcCEEEecHHHHH
Q 017781 261 ATIMALEEVVKATQGRIPV--FLDGGVRRGTDVFKALALGASGIFIGRPVVY 310 (366)
Q Consensus 261 ~~~~~l~~i~~~~~~~i~v--i~~GGI~~~~dv~kalalGAd~V~igr~~l~ 310 (366)
++++.|.++++.. ++|| |+.|||.|++|+.+++.+|||+|++||.++.
T Consensus 185 ad~elI~~Ike~~--~IPVV~IAnGGI~TpedA~~~le~GaDGVmVGrAI~~ 234 (291)
T 3o07_A 185 VPVSLLKDVLEKG--KLPVVNFAAGGVATPADAALLMQLGCDGVFVGSGIFK 234 (291)
T ss_dssp SCHHHHHHHHHHT--SCSSCEEBCSSCCSHHHHHHHHHTTCSCEEECGGGGG
T ss_pred CCHHHHHHHHHcc--CCCEEEecCCCCCCHHHHHHHHHhCCCEEEEchHHhC
Confidence 3577888888776 7888 5689999999999999999999999998764
|
| >1wa3_A 2-keto-3-deoxy-6-phosphogluconate aldolase; KDPG, pyruvate, lyase; 1.9A {Thermotoga maritima} SCOP: c.1.10.1 PDB: 1vlw_A | Back alignment and structure |
|---|
Probab=98.63 E-value=6.7e-07 Score=79.70 Aligned_cols=158 Identities=11% Similarity=0.088 Sum_probs=100.3
Q ss_pred cCCHHHHHHHHHHHHHcCCCEEEEecCCCCCcchhHHHhhhcCCCCccccccccccccCCCccccchhhHHHhhh----c
Q 017781 132 YKDRNVVAQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLTLKNFQGLDLGKMDEANDSGLAAYVAG----Q 207 (366)
Q Consensus 132 ~~d~~~~~~~l~ra~~~G~~ai~vtvd~p~~g~r~~d~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~ 207 (366)
..+.+...++++.+.+.|++.+.+++.+|..-.-.+.++..++-...+...... +. ......... .
T Consensus 18 ~~~~~~~~~~~~~~~~~G~~~iev~~~~~~~~~~i~~ir~~~~~~~~ig~~~v~-----~~-----~~~~~a~~~Gad~i 87 (205)
T 1wa3_A 18 ANSVEEAKEKALAVFEGGVHLIEITFTVPDADTVIKELSFLKEKGAIIGAGTVT-----SV-----EQCRKAVESGAEFI 87 (205)
T ss_dssp CSSHHHHHHHHHHHHHTTCCEEEEETTSTTHHHHHHHTHHHHHTTCEEEEESCC-----SH-----HHHHHHHHHTCSEE
T ss_pred cCCHHHHHHHHHHHHHCCCCEEEEeCCChhHHHHHHHHHHHCCCCcEEEecccC-----CH-----HHHHHHHHcCCCEE
Confidence 567888888999999999999999988864211133333332100000000000 00 001111111 1
Q ss_pred cCCCCCHHHHHHHHHhcCCCEEEEeccCHHH----HHcCCcEEEEcCCCccCCCCCcchHHHHHHHHHHcCCCceEEEec
Q 017781 208 IDRSLSWKDVKWLQTITKLPILVKGVLTAED----VQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDG 283 (366)
Q Consensus 208 ~d~~~~~~~i~~lr~~~~~pv~vK~v~~~~d----~~aGad~I~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~i~vi~~G 283 (366)
..+.+.-+.++..++ .++|++. ++.+..+ .++|+|.|.+... ....++.+.++++.++ ++||+++|
T Consensus 88 v~~~~~~~~~~~~~~-~g~~vi~-g~~t~~e~~~a~~~Gad~vk~~~~-------~~~g~~~~~~l~~~~~-~~pvia~G 157 (205)
T 1wa3_A 88 VSPHLDEEISQFCKE-KGVFYMP-GVMTPTELVKAMKLGHTILKLFPG-------EVVGPQFVKAMKGPFP-NVKFVPTG 157 (205)
T ss_dssp ECSSCCHHHHHHHHH-HTCEEEC-EECSHHHHHHHHHTTCCEEEETTH-------HHHHHHHHHHHHTTCT-TCEEEEBS
T ss_pred EcCCCCHHHHHHHHH-cCCcEEC-CcCCHHHHHHHHHcCCCEEEEcCc-------cccCHHHHHHHHHhCC-CCcEEEcC
Confidence 224445555766665 6899887 6667766 9999999987431 1123456666666554 79999999
Q ss_pred CCCCHHHHHHHHHhCcCEEEecHHHHH
Q 017781 284 GVRRGTDVFKALALGASGIFIGRPVVY 310 (366)
Q Consensus 284 GI~~~~dv~kalalGAd~V~igr~~l~ 310 (366)
||. .+++.+++.+|||+|.+|+.++.
T Consensus 158 GI~-~~~~~~~~~~Ga~~v~vGs~i~~ 183 (205)
T 1wa3_A 158 GVN-LDNVCEWFKAGVLAVGVGSALVK 183 (205)
T ss_dssp SCC-TTTHHHHHHHTCSCEEECHHHHC
T ss_pred CCC-HHHHHHHHHCCCCEEEECccccC
Confidence 996 78999999999999999998864
|
| >2nv1_A Pyridoxal biosynthesis lyase PDXS; (beta/alpha)8-barrel, synthase; 2.08A {Bacillus subtilis} PDB: 2nv2_A* 1znn_A | Back alignment and structure |
|---|
Probab=98.63 E-value=4e-08 Score=93.56 Aligned_cols=79 Identities=23% Similarity=0.318 Sum_probs=54.6
Q ss_pred chHHHHHHHHHHcCCCceEE--EecCCCCHHHHHHHHHhCcCEEEecHHHHHHhhhcCHHHHHHHHHHHHHHHHHHHHHc
Q 017781 261 ATIMALEEVVKATQGRIPVF--LDGGVRRGTDVFKALALGASGIFIGRPVVYSLAAEGEKGVRRVLEMLREEFELAMALS 338 (366)
Q Consensus 261 ~~~~~l~~i~~~~~~~i~vi--~~GGI~~~~dv~kalalGAd~V~igr~~l~~l~~~G~~gv~~~~~~l~~el~~~m~~~ 338 (366)
..++.+.++++.. ++||+ ++|||++++|+.+++.+|||+|++|+.++.. ..+ ...++.+.+.+..++...
T Consensus 194 ~~~~~i~~i~~~~--~iPvi~~a~GGI~~~~d~~~~~~~GadgV~vGsai~~~---~~p---~~~~~~l~~~~~~~~~~~ 265 (305)
T 2nv1_A 194 APYELLLQIKKDG--KLPVVNFAAGGVATPADAALMMQLGADGVFVGSGIFKS---DNP---AKFAKAIVEATTHFTDYK 265 (305)
T ss_dssp CCHHHHHHHHHHT--SCSSCEEBCSCCCSHHHHHHHHHTTCSCEEECGGGGGS---SCH---HHHHHHHHHHHHTTTCHH
T ss_pred ccHHHHHHHHHhc--CCCEEEEeccCCCCHHHHHHHHHcCCCEEEEcHHHHcC---CCH---HHHHHHHHHHHHHhcChh
Confidence 3456777777765 78988 9999999999999999999999999998753 112 234445555555444444
Q ss_pred CCCChhhhc
Q 017781 339 GCRSLKEIT 347 (366)
Q Consensus 339 G~~~l~el~ 347 (366)
+..++.++.
T Consensus 266 ~~~~~~~~~ 274 (305)
T 2nv1_A 266 LIAELSKEL 274 (305)
T ss_dssp HHHHHTSCC
T ss_pred hHHHHHHHh
Confidence 433344443
|
| >3oa3_A Aldolase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, pathogenic fungus; 1.60A {Coccidioides immitis} | Back alignment and structure |
|---|
Probab=98.62 E-value=1.1e-06 Score=82.47 Aligned_cols=168 Identities=16% Similarity=0.151 Sum_probs=102.0
Q ss_pred HHHHHHHHcCCceecCCCCCCCHHHHhccCC--CceEEE-e-eec--CCHHHHHHHHHHHHHcCCCEEEEecCCCCCcch
Q 017781 92 ATARAASAAGTIMTLSSWSTSSVEEVASTGP--GIRFFQ-L-YVY--KDRNVVAQLVRRAERAGFKAIALTVDTPRLGRR 165 (366)
Q Consensus 92 ~la~aa~~~G~~~~vs~~~~~~~e~i~~~~~--~~~~~Q-l-y~~--~d~~~~~~~l~ra~~~G~~ai~vtvd~p~~g~r 165 (366)
.+.+.|.+.|+..++- ...-+....+... +....- + |+. ...+.-...++.|.+.|++.|.+.+|...
T Consensus 78 ~lc~eA~~~g~aaVCV--~P~~V~~a~~~L~~s~V~V~tVigFP~G~~~~~~Kv~Ea~~Ai~~GAdEIDmVINig~---- 151 (288)
T 3oa3_A 78 VLCAEAKEYGFATVCV--RPDYVSRAVQYLQGTQVGVTCVIGFHEGTYSTDQKVSEAKRAMQNGASELDMVMNYPW---- 151 (288)
T ss_dssp HHHHHHHHHTCSEEEE--CGGGHHHHHHHTTTSSCEEEEEESTTTSCSCHHHHHHHHHHHHHTTCSEEEEECCHHH----
T ss_pred HHHHHHHhcCCcEEEE--CHHHHHHHHHHcCCCCCeEEEEeCCCCCCCcHHHHHHHHHHHHHcCCCEEEEEeehhh----
Confidence 6788888888876541 1222333222211 111111 1 221 23444455567777899999988766210
Q ss_pred hHHHhhhcCCCCccccccccccccCCCccccchhhHHHhhhccCCCCCHHHHHHHHHhcCCCEEEEec-----cCHHH--
Q 017781 166 EADIKNRFTLPPFLTLKNFQGLDLGKMDEANDSGLAAYVAGQIDRSLSWKDVKWLQTITKLPILVKGV-----LTAED-- 238 (366)
Q Consensus 166 ~~d~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~i~~lr~~~~~pv~vK~v-----~~~~d-- 238 (366)
+. .++.....++|+.+++..+.| ++|.+ ++.++
T Consensus 152 -------------------------------------lk--~g~~~~v~~eI~~V~~a~~~~-~lKVIlEt~~Lt~eei~ 191 (288)
T 3oa3_A 152 -------------------------------------LS--EKRYTDVFQDIRAVRLAAKDA-ILKVILETSQLTADEII 191 (288)
T ss_dssp -------------------------------------HH--TTCHHHHHHHHHHHHHHTTTS-EEEEECCGGGCCHHHHH
T ss_pred -------------------------------------hc--CCcHHHHHHHHHHHHHHhcCC-CceEEEECCCCCHHHHH
Confidence 00 012223456788898887766 58866 35444
Q ss_pred ------HHcCCcEEEEcCCCccCCCCCcchHHHHHHHHHHcCCCceEEEecCCCCHHHHHHHHHhCcCEEEecH
Q 017781 239 ------VQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFIGR 306 (366)
Q Consensus 239 ------~~aGad~I~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~i~vi~~GGI~~~~dv~kalalGAd~V~igr 306 (366)
.++|||+|..|...+ ...-.+.....+.++.+..+.+++|.++||||+.+|+.+++.+||+.++..+
T Consensus 192 ~A~~ia~eaGADfVKTSTGf~-~~GAT~edv~lmr~~v~~~g~~v~VKAAGGIrt~edAl~mi~aGA~RiGtS~ 264 (288)
T 3oa3_A 192 AGCVLSSLAGADYVKTSTGFN-GPGASIENVSLMSAVCDSLQSETRVKASGGIRTIEDCVKMVRAGAERLGASA 264 (288)
T ss_dssp HHHHHHHHTTCSEEECCCSSS-SCCCCHHHHHHHHHHHHHSSSCCEEEEESSCCSHHHHHHHHHTTCSEEEESC
T ss_pred HHHHHHHHcCCCEEEcCCCCC-CCCCCHHHHHHHHHHHHHhCCCceEEEeCCCCCHHHHHHHHHcCCceeehhh
Confidence 899999999884211 1111233445555555444568999999999999999999999999665554
|
| >3ngj_A Deoxyribose-phosphate aldolase; lyase, structural genomics, structural genomics center for infectious disease, ssgcid; 1.70A {Entamoeba histolytica} | Back alignment and structure |
|---|
Probab=98.60 E-value=6.4e-07 Score=81.96 Aligned_cols=90 Identities=29% Similarity=0.201 Sum_probs=67.6
Q ss_pred CHHHHHHHHHhcCCCEEEEec-----cCHHH--------HHcCCcEEEEcCCCccCCCCCcchHHHHHHHHHHcCCCceE
Q 017781 213 SWKDVKWLQTITKLPILVKGV-----LTAED--------VQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPV 279 (366)
Q Consensus 213 ~~~~i~~lr~~~~~pv~vK~v-----~~~~d--------~~aGad~I~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~i~v 279 (366)
..++|+.+++..+. .++|.+ ++.++ .++|+|+|..|...+ .+..+++.+...++.++++++|
T Consensus 129 v~~eI~~v~~a~~~-~~lKVIlEt~~Lt~eei~~a~~ia~~aGADfVKTSTGf~----~ggAt~~dv~lmr~~vg~~v~V 203 (239)
T 3ngj_A 129 VEKDVKAVVDASGK-ALTKVIIECCYLTNEEKVEVCKRCVAAGAEYVKTSTGFG----THGATPEDVKLMKDTVGDKALV 203 (239)
T ss_dssp HHHHHHHHHHHHTT-SEEEEECCGGGSCHHHHHHHHHHHHHHTCSEEECCCSSS----SCCCCHHHHHHHHHHHGGGSEE
T ss_pred HHHHHHHHHHHhcC-CceEEEEecCCCCHHHHHHHHHHHHHHCcCEEECCCCCC----CCCCCHHHHHHHHHhhCCCceE
Confidence 44678888888753 367755 45554 789999999885311 1235666666667777778999
Q ss_pred EEecCCCCHHHHHHHHHhCcCEEEecHH
Q 017781 280 FLDGGVRRGTDVFKALALGASGIFIGRP 307 (366)
Q Consensus 280 i~~GGI~~~~dv~kalalGAd~V~igr~ 307 (366)
.++||||+.+|+.+++.+||+.++..+.
T Consensus 204 KasGGIrt~~da~~~i~aGA~riGtS~~ 231 (239)
T 3ngj_A 204 KAAGGIRTFDDAMKMINNGASRIGASAG 231 (239)
T ss_dssp EEESSCCSHHHHHHHHHTTEEEEEESCH
T ss_pred EEeCCCCCHHHHHHHHHhcccceecccH
Confidence 9999999999999999999998776643
|
| >3qja_A IGPS, indole-3-glycerol phosphate synthase; structural genomics, T structural genomics consortium, TBSGC, lyase; 1.29A {Mycobacterium tuberculosis} PDB: 3t40_A* 3t44_A* 3t55_A* 3t78_A* 4fb7_A* | Back alignment and structure |
|---|
Probab=98.59 E-value=3.2e-07 Score=85.94 Aligned_cols=84 Identities=21% Similarity=0.300 Sum_probs=64.6
Q ss_pred cCCCEEEEeccCHHH----HHcCCcEEEEcCCCccCCCCCcchHHHHHHHHHHcCCCceEEEecCCCCHHHHHHHHHhCc
Q 017781 224 TKLPILVKGVLTAED----VQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGA 299 (366)
Q Consensus 224 ~~~pv~vK~v~~~~d----~~aGad~I~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~i~vi~~GGI~~~~dv~kalalGA 299 (366)
+++.+++ .+.+.++ .++|+|.|.+.|..... -...++.+.++++.++.++|+++.|||++++|+.+++.+||
T Consensus 161 lGl~~lv-ev~t~ee~~~A~~~Gad~IGv~~r~l~~---~~~dl~~~~~l~~~v~~~~pvVaegGI~t~edv~~l~~~Ga 236 (272)
T 3qja_A 161 LGMTALV-EVHTEQEADRALKAGAKVIGVNARDLMT---LDVDRDCFARIAPGLPSSVIRIAESGVRGTADLLAYAGAGA 236 (272)
T ss_dssp TTCEEEE-EESSHHHHHHHHHHTCSEEEEESBCTTT---CCBCTTHHHHHGGGSCTTSEEEEESCCCSHHHHHHHHHTTC
T ss_pred CCCcEEE-EcCCHHHHHHHHHCCCCEEEECCCcccc---cccCHHHHHHHHHhCcccCEEEEECCCCCHHHHHHHHHcCC
Confidence 5666554 4567766 78899999987643222 22345566677776765799999999999999999999999
Q ss_pred CEEEecHHHHHH
Q 017781 300 SGIFIGRPVVYS 311 (366)
Q Consensus 300 d~V~igr~~l~~ 311 (366)
|+|.||++++.+
T Consensus 237 dgvlVGsal~~a 248 (272)
T 3qja_A 237 DAVLVGEGLVTS 248 (272)
T ss_dssp SEEEECHHHHTC
T ss_pred CEEEEcHHHhCC
Confidence 999999999764
|
| >4a3u_A NCR, NADH\:flavin oxidoreductase/NADH oxidase; HET: FMN; 1.70A {Zymomonas mobilis} | Back alignment and structure |
|---|
Probab=98.56 E-value=1.3e-06 Score=85.02 Aligned_cols=97 Identities=14% Similarity=-0.021 Sum_probs=65.3
Q ss_pred CCHHHHHHHHHhcC-CCEEEEeccC-----------HHH--------HHcCCcEEEEcCCCccCCCCCcchHHHHHHHHH
Q 017781 212 LSWKDVKWLQTITK-LPILVKGVLT-----------AED--------VQAGAAGIIVSNHGARQLDYVPATIMALEEVVK 271 (366)
Q Consensus 212 ~~~~~i~~lr~~~~-~pv~vK~v~~-----------~~d--------~~aGad~I~vs~~gg~~~~~~~~~~~~l~~i~~ 271 (366)
+..+.++.+|+.++ -+|.+|...+ .+. .+.|+|.+.++...-..............++++
T Consensus 204 f~~Eii~avr~~vg~~~v~vRls~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~a~~ik~ 283 (358)
T 4a3u_A 204 LLKDVTERVIATIGKERTAVRLSPNGEIQGTVDSHPEQVFIPAAKMLSDLDIAFLGMREGAVDGTFGKTDQPKLSPEIRK 283 (358)
T ss_dssp HHHHHHHHHHHHHCGGGEEEEECCSSCBTTBCCSSTHHHHHHHHHHHHHHTCSEEEEECCBTTCSSSBCSSCCCHHHHHH
T ss_pred HHHHHHHHHHHHcCccceEEEeccCcccCCCcccchHHHHHHHHHhhhccCccccccccccccCcccccccHHHHHHHHH
Confidence 46688999999883 4688886421 111 678999998876331111110011123345566
Q ss_pred HcCCCceEEEecCCCCHHHHHHHHHhC-cCEEEecHHHHHH
Q 017781 272 ATQGRIPVFLDGGVRRGTDVFKALALG-ASGIFIGRPVVYS 311 (366)
Q Consensus 272 ~~~~~i~vi~~GGI~~~~dv~kalalG-Ad~V~igr~~l~~ 311 (366)
.. ..||+ .||+.+++++.++|+-| ||+|++||++|..
T Consensus 284 ~~--~~~v~-~~g~~~~~~ae~~l~~G~aD~V~~gR~~lad 321 (358)
T 4a3u_A 284 VF--KPPLV-LNQDYTFETAQAALDSGVADAISFGRPFIGN 321 (358)
T ss_dssp HC--CSCEE-EESSCCHHHHHHHHHHTSCSEEEESHHHHHC
T ss_pred hc--CCcEE-EeCCCCHHHHHHHHHcCCceEeHhhHHHHhC
Confidence 55 45665 57889999999999999 9999999999863
|
| >3tsm_A IGPS, indole-3-glycerol phosphate synthase; structural genomics, ssgcid, seattle structural GE center for infectious disease, lyase; 2.15A {Brucella melitensis} SCOP: c.1.2.0 | Back alignment and structure |
|---|
Probab=98.54 E-value=1.3e-06 Score=81.69 Aligned_cols=158 Identities=17% Similarity=0.214 Sum_probs=95.1
Q ss_pred HHHHHHHHHcCCCEEEEecCCCCCcchhHHH---hhhcCCCCccccccccccccCCCccccchhhHHHhhhccCC-----
Q 017781 139 AQLVRRAERAGFKAIALTVDTPRLGRREADI---KNRFTLPPFLTLKNFQGLDLGKMDEANDSGLAAYVAGQIDR----- 210 (366)
Q Consensus 139 ~~~l~ra~~~G~~ai~vtvd~p~~g~r~~d~---~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~----- 210 (366)
.++.+..++.|+.+|=|-.|....+....++ +....+|. ..+.+ - +. ..+ ..+.....-|.
T Consensus 82 ~~~A~~y~~~GA~~IsVltd~~~f~Gs~~~L~~ir~~v~lPV--l~Kdf---i---~d--~~q-i~ea~~~GAD~VlLi~ 150 (272)
T 3tsm_A 82 PALAKAYEEGGAACLSVLTDTPSFQGAPEFLTAARQACSLPA--LRKDF---L---FD--PYQ-VYEARSWGADCILIIM 150 (272)
T ss_dssp HHHHHHHHHTTCSEEEEECCSTTTCCCHHHHHHHHHTSSSCE--EEESC---C---CS--THH-HHHHHHTTCSEEEEET
T ss_pred HHHHHHHHHCCCCEEEEeccccccCCCHHHHHHHHHhcCCCE--EECCc---c---CC--HHH-HHHHHHcCCCEEEEcc
Confidence 4566778889999986655655554444443 33344442 11111 0 00 000 11111111222
Q ss_pred -CCCHHHHHHHHHh---cCCCEEEEeccCHHH----HHcCCcEEEEcCCCccCCCCCcchHHHHHHHHHHcCCCceEEEe
Q 017781 211 -SLSWKDVKWLQTI---TKLPILVKGVLTAED----VQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLD 282 (366)
Q Consensus 211 -~~~~~~i~~lr~~---~~~pv~vK~v~~~~d----~~aGad~I~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~i~vi~~ 282 (366)
.++.+.++++.+. .+.-+++ .+.+.++ .++|+|.|-+.|...+.. ...++...++.+.++.++|+|+.
T Consensus 151 a~L~~~~l~~l~~~a~~lGl~~lv-evh~~eEl~~A~~~ga~iIGinnr~l~t~---~~dl~~~~~L~~~ip~~~~vIae 226 (272)
T 3tsm_A 151 ASVDDDLAKELEDTAFALGMDALI-EVHDEAEMERALKLSSRLLGVNNRNLRSF---EVNLAVSERLAKMAPSDRLLVGE 226 (272)
T ss_dssp TTSCHHHHHHHHHHHHHTTCEEEE-EECSHHHHHHHTTSCCSEEEEECBCTTTC---CBCTHHHHHHHHHSCTTSEEEEE
T ss_pred cccCHHHHHHHHHHHHHcCCeEEE-EeCCHHHHHHHHhcCCCEEEECCCCCccC---CCChHHHHHHHHhCCCCCcEEEE
Confidence 2333445554332 3544333 3456666 788999887776543322 23456666777777778999999
Q ss_pred cCCCCHHHHHHHHHhCcCEEEecHHHHHH
Q 017781 283 GGVRRGTDVFKALALGASGIFIGRPVVYS 311 (366)
Q Consensus 283 GGI~~~~dv~kalalGAd~V~igr~~l~~ 311 (366)
|||.+++|+.++..+|||+|.||+.++.+
T Consensus 227 sGI~t~edv~~l~~~Ga~gvLVG~almr~ 255 (272)
T 3tsm_A 227 SGIFTHEDCLRLEKSGIGTFLIGESLMRQ 255 (272)
T ss_dssp SSCCSHHHHHHHHTTTCCEEEECHHHHTS
T ss_pred CCCCCHHHHHHHHHcCCCEEEEcHHHcCC
Confidence 99999999999999999999999999864
|
| >2qjg_A Putative aldolase MJ0400; beta-alpha barrel, lyase; HET: F2P; 2.60A {Methanocaldococcus jannaschii} PDB: 2qjh_A 2qji_A | Back alignment and structure |
|---|
Probab=98.48 E-value=9e-07 Score=82.44 Aligned_cols=179 Identities=18% Similarity=0.151 Sum_probs=107.0
Q ss_pred ccCCceEecccccccccCChhhHHHHHHHHHcCCceecCCCCCCCHHHHhccC--CCceEEEeeecCC----H--HHHHH
Q 017781 69 KISMPIMIAPTAMQKMAHPEGEYATARAASAAGTIMTLSSWSTSSVEEVASTG--PGIRFFQLYVYKD----R--NVVAQ 140 (366)
Q Consensus 69 ~l~~Pi~iApm~~~~l~~~~~e~~la~aa~~~G~~~~vs~~~~~~~e~i~~~~--~~~~~~Qly~~~d----~--~~~~~ 140 (366)
.+.+|+.++||.... .=..+++++.+.|+..++.+.. ..+.+.+.. ..+..+|+....+ . +...+
T Consensus 31 ~id~~~~l~p~~~~~-----~~~~~~~~~~~~g~~~i~~~~~--~~~~~~~~~~~~~~~~v~~~~~~~~~~d~~~~~~~~ 103 (273)
T 2qjg_A 31 PMDHGVSNGPIKGLI-----DIRKTVNDVAEGGANAVLLHKG--IVRHGHRGYGKDVGLIIHLSGGTAISPNPLKKVIVT 103 (273)
T ss_dssp ECCHHHHHCSCTTSS-----SHHHHHHHHHHHTCSEEEECHH--HHHSCCCSSSCCCEEEEECEECCTTSSSTTCCEECS
T ss_pred EcccccccCCCcchh-----hHHHHHHHHHhcCCCEEEeCHH--HHHHHHHhhcCCCCEEEEEcCCCcCCCCcccchHHH
Confidence 445677778874321 1237899999999988763210 011111111 1345667653221 1 11134
Q ss_pred HHHHHHHcCCCEEEEe--cCCCCCcchhHHHhhhcCCCCccccccccccccCCCccccchhhHHHhhhccCCCCCHHHHH
Q 017781 141 LVRRAERAGFKAIALT--VDTPRLGRREADIKNRFTLPPFLTLKNFQGLDLGKMDEANDSGLAAYVAGQIDRSLSWKDVK 218 (366)
Q Consensus 141 ~l~ra~~~G~~ai~vt--vd~p~~g~r~~d~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~i~ 218 (366)
.++++.++|++.+.+. ..++.. .+.. ...+.+.
T Consensus 104 ~v~~a~~~Ga~~v~~~l~~~~~~~--------------------------------------~~~~-------~~~~~v~ 138 (273)
T 2qjg_A 104 TVEEAIRMGADAVSIHVNVGSDED--------------------------------------WEAY-------RDLGMIA 138 (273)
T ss_dssp CHHHHHHTTCSEEEEEEEETSTTH--------------------------------------HHHH-------HHHHHHH
T ss_pred HHHHHHHcCCCEEEEEEecCCCCH--------------------------------------HHHH-------HHHHHHH
Confidence 5677888999998443 332100 0000 0112222
Q ss_pred HHHHhcCCCEEEEec---------cCHHH--------HHcCCcEEEEcCCCccCCCCCcchHHHHHHHHHHcCCCceEEE
Q 017781 219 WLQTITKLPILVKGV---------LTAED--------VQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFL 281 (366)
Q Consensus 219 ~lr~~~~~pv~vK~v---------~~~~d--------~~aGad~I~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~i~vi~ 281 (366)
.+.+.+++|+++... .+.++ .++|+|+|.++.. ..++.+.++++.+ ++||++
T Consensus 139 ~~~~~~g~~viv~~~~~G~~l~~~~~~~~~~~~a~~a~~~Gad~i~~~~~---------~~~~~l~~i~~~~--~ipvva 207 (273)
T 2qjg_A 139 ETCEYWGMPLIAMMYPRGKHIQNERDPELVAHAARLGAELGADIVKTSYT---------GDIDSFRDVVKGC--PAPVVV 207 (273)
T ss_dssp HHHHHHTCCEEEEEEECSTTCSCTTCHHHHHHHHHHHHHTTCSEEEECCC---------SSHHHHHHHHHHC--SSCEEE
T ss_pred HHHHHcCCCEEEEeCCCCcccCCCCCHhHHHHHHHHHHHcCCCEEEECCC---------CCHHHHHHHHHhC--CCCEEE
Confidence 333335788888741 23322 7899999988741 3567888888877 799999
Q ss_pred ecCCCC--HHH----HHHHHHhCcCEEEecHHHHH
Q 017781 282 DGGVRR--GTD----VFKALALGASGIFIGRPVVY 310 (366)
Q Consensus 282 ~GGI~~--~~d----v~kalalGAd~V~igr~~l~ 310 (366)
.|||++ .+| +.+++.+||++|.+|+.++.
T Consensus 208 ~GGi~~~~~~~~~~~~~~~~~~Ga~gv~vg~~i~~ 242 (273)
T 2qjg_A 208 AGGPKTNTDEEFLQMIKDAMEAGAAGVAVGRNIFQ 242 (273)
T ss_dssp ECCSCCSSHHHHHHHHHHHHHHTCSEEECCHHHHT
T ss_pred EeCCCCCCHHHHHHHHHHHHHcCCcEEEeeHHhhC
Confidence 999995 778 55666899999999999865
|
| >2v82_A 2-dehydro-3-deoxy-6-phosphogalactonate aldolase; lyase, kdpgal; HET: KDP; 2.1A {Escherichia coli} PDB: 2v81_A* | Back alignment and structure |
|---|
Probab=98.48 E-value=1.8e-06 Score=77.33 Aligned_cols=185 Identities=13% Similarity=0.156 Sum_probs=106.7
Q ss_pred ecCCHHHHHHHHHHHHHcCCCEEEEecCCCCCcchhHHHhhhcCCCCccccccccccccCCCccccchhhHHHhhhc---
Q 017781 131 VYKDRNVVAQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLTLKNFQGLDLGKMDEANDSGLAAYVAGQ--- 207 (366)
Q Consensus 131 ~~~d~~~~~~~l~ra~~~G~~ai~vtvd~p~~g~r~~d~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--- 207 (366)
...|.+...+.++++.+.|++.+-++...+..-...+.+...+..+.-+... ... ... ....+....
T Consensus 14 ~~~d~~~~~~~~~~~~~~G~~~i~l~~~~~~~~~~i~~i~~~~~~~l~vg~g---~~~----~~~---~i~~a~~~Gad~ 83 (212)
T 2v82_A 14 RGITPDEALAHVGAVIDAGFDAVEIPLNSPQWEQSIPAIVDAYGDKALIGAG---TVL----KPE---QVDALARMGCQL 83 (212)
T ss_dssp TTCCHHHHHHHHHHHHHHTCCEEEEETTSTTHHHHHHHHHHHHTTTSEEEEE---CCC----SHH---HHHHHHHTTCCE
T ss_pred eCCCHHHHHHHHHHHHHCCCCEEEEeCCChhHHHHHHHHHHhCCCCeEEEec---ccc----CHH---HHHHHHHcCCCE
Confidence 3567777777788888888888877766543322233344433322111000 000 000 000000000
Q ss_pred -cCCCCCHHHHHHHHHhcCCCEEEEeccCHHH----HHcCCcEEEEcCCCccCCCCCcchHHHHHHHHHHcCCCceEEEe
Q 017781 208 -IDRSLSWKDVKWLQTITKLPILVKGVLTAED----VQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLD 282 (366)
Q Consensus 208 -~d~~~~~~~i~~lr~~~~~pv~vK~v~~~~d----~~aGad~I~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~i~vi~~ 282 (366)
.-+....+.++..++ .+.++++. +.++++ .+.|+|+|.+... .+..++.+.++++.++.++||+++
T Consensus 84 V~~~~~~~~~~~~~~~-~g~~~~~g-~~t~~e~~~a~~~G~d~v~v~~t-------~~~g~~~~~~l~~~~~~~ipvia~ 154 (212)
T 2v82_A 84 IVTPNIHSEVIRRAVG-YGMTVCPG-CATATEAFTALEAGAQALKIFPS-------SAFGPQYIKALKAVLPSDIAVFAV 154 (212)
T ss_dssp EECSSCCHHHHHHHHH-TTCEEECE-ECSHHHHHHHHHTTCSEEEETTH-------HHHCHHHHHHHHTTSCTTCEEEEE
T ss_pred EEeCCCCHHHHHHHHH-cCCCEEee-cCCHHHHHHHHHCCCCEEEEecC-------CCCCHHHHHHHHHhccCCCeEEEe
Confidence 012233455555444 57666554 677776 7899999987331 122456777777665335999999
Q ss_pred cCCCCHHHHHHHHHhCcCEEEecHHHHHHhhhcCHHHHHHHHHHHHHHHHHHHHH
Q 017781 283 GGVRRGTDVFKALALGASGIFIGRPVVYSLAAEGEKGVRRVLEMLREEFELAMAL 337 (366)
Q Consensus 283 GGI~~~~dv~kalalGAd~V~igr~~l~~l~~~G~~gv~~~~~~l~~el~~~m~~ 337 (366)
|||. .+++.+++.+||++|.+|+.++.+. +..+.+.+.++.+.+.++...++
T Consensus 155 GGI~-~~~i~~~~~~Ga~gv~vGsai~~~~--~~~~d~~~~~~~l~~~~~~~~~~ 206 (212)
T 2v82_A 155 GGVT-PENLAQWIDAGCAGAGLGSDLYRAG--QSVERTAQQAAAFVKAYREAVQL 206 (212)
T ss_dssp SSCC-TTTHHHHHHHTCSEEEECTTTCCTT--CCHHHHHHHHHHHHHHHHHHHHC
T ss_pred CCCC-HHHHHHHHHcCCCEEEEChHHhCCC--CCHHHHHHHHHHHHHHHHHHHHh
Confidence 9997 9999999999999999999886421 01133555666666666655544
|
| >2w6r_A Imidazole glycerol phosphate synthase subunit HISF; lyase, fusion protein, cobalamin, precorrin, novel fold, VIT; 2.10A {Thermotoga maritima} | Back alignment and structure |
|---|
Probab=98.45 E-value=2.6e-06 Score=78.82 Aligned_cols=70 Identities=16% Similarity=0.227 Sum_probs=54.8
Q ss_pred HHcCCcEEEEcCCCccCCCCCcchHHHHHHHHHHcCCCceEEEecCCCCHHHHHHHHHhCcCEEEecHHHHHH
Q 017781 239 VQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFIGRPVVYS 311 (366)
Q Consensus 239 ~~aGad~I~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~i~vi~~GGI~~~~dv~kalalGAd~V~igr~~l~~ 311 (366)
.+.|++.|.+++........+ +.++.+.++++.+ ++|||+.|||++++|+.+++.+|||+|++|++++..
T Consensus 166 ~~~G~~~i~~t~~~~~g~~~g-~~~~~i~~l~~~~--~ipvia~GGI~~~ed~~~~~~~Gadgv~vgsal~~~ 235 (266)
T 2w6r_A 166 EKRGAGEILLTSIDRDGTKSG-YDTEMIRFVRPLT--TLPIIASGGAGKMEHFLEAFLAGADAALAASVFHFR 235 (266)
T ss_dssp HHTTCSEEEEEETTTTTTCSC-CCHHHHHHHGGGC--CSCEEEESCCCSHHHHHHHHHHTCSEEEESTTTC--
T ss_pred HHcCCCEEEEEeecCCCCcCC-CCHHHHHHHHHHc--CCCEEEeCCCCCHHHHHHHHHcCCHHHHccHHHHcC
Confidence 788999999864321111123 3578888888776 899999999999999999999999999999998754
|
| >3r12_A Deoxyribose-phosphate aldolase; TIM beta/alpha-barrel, structural genomics, joint center for structural genomics, JCSG; HET: MSE CIT; 1.75A {Thermotoga maritima} SCOP: c.1.10.1 PDB: 1o0y_A* 3r13_A* | Back alignment and structure |
|---|
Probab=98.45 E-value=3.8e-06 Score=77.65 Aligned_cols=89 Identities=24% Similarity=0.189 Sum_probs=67.1
Q ss_pred CHHHHHHHHHhcCCCEEEEec-----cCHHH--------HHcCCcEEEEcCCCccCCCCCcchHHHHHHHHHHcCCCceE
Q 017781 213 SWKDVKWLQTITKLPILVKGV-----LTAED--------VQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPV 279 (366)
Q Consensus 213 ~~~~i~~lr~~~~~pv~vK~v-----~~~~d--------~~aGad~I~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~i~v 279 (366)
..++|+.+++..+ ...+|.+ ++.++ .++|||+|..|...+ .+.++.+.+...++.++++++|
T Consensus 145 v~~eI~~v~~a~~-~~~lKVIlEt~~Lt~eei~~A~~ia~eaGADfVKTSTGf~----~~GAT~edV~lm~~~vg~~v~V 219 (260)
T 3r12_A 145 VYEDIRSVVESVK-GKVVKVIIETCYLDTEEKIAACVISKLAGAHFVKTSTGFG----TGGATAEDVHLMKWIVGDEMGV 219 (260)
T ss_dssp HHHHHHHHHHHTT-TSEEEEECCGGGCCHHHHHHHHHHHHHTTCSEEECCCSSS----SCCCCHHHHHHHHHHHCTTSEE
T ss_pred HHHHHHHHHHhcC-CCcEEEEEeCCCCCHHHHHHHHHHHHHhCcCEEEcCCCCC----CCCCCHHHHHHHHHHhCCCceE
Confidence 3467888888775 3456866 35544 899999999885211 2335667776677777779999
Q ss_pred EEecCCCCHHHHHHHHHhCcCEEEecH
Q 017781 280 FLDGGVRRGTDVFKALALGASGIFIGR 306 (366)
Q Consensus 280 i~~GGI~~~~dv~kalalGAd~V~igr 306 (366)
-++||||+.+|+.+.+.+||+-++..+
T Consensus 220 KaAGGIrt~~~al~mi~aGA~RiGtS~ 246 (260)
T 3r12_A 220 KASGGIRTFEDAVKMIMYGADRIGTSS 246 (260)
T ss_dssp EEESSCCSHHHHHHHHHTTCSEEEESC
T ss_pred EEeCCCCCHHHHHHHHHcCCceeecch
Confidence 999999999999999999999766553
|
| >2ekc_A AQ_1548, tryptophan synthase alpha chain; structural genomics, lyase, NPPSFA, national project on PROT structural and functional analyses; 2.00A {Aquifex aeolicus} | Back alignment and structure |
|---|
Probab=98.45 E-value=3.7e-06 Score=78.25 Aligned_cols=61 Identities=18% Similarity=0.242 Sum_probs=45.7
Q ss_pred HHHHHHHHHcCCCceEEEecCCCCHHHHHHHHHhCcCEEEecHHHHHHhhhcCHHHHHHHHHHH
Q 017781 264 MALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFIGRPVVYSLAAEGEKGVRRVLEML 327 (366)
Q Consensus 264 ~~l~~i~~~~~~~i~vi~~GGI~~~~dv~kalalGAd~V~igr~~l~~l~~~G~~gv~~~~~~l 327 (366)
+.+.++++.. ++||++.+||++++++.+ +..|||+|.+|+.+...+..+..+.+.++++.+
T Consensus 196 ~~v~~vr~~~--~~pv~vG~GI~t~e~~~~-~~~gADgvIVGSai~~~~~~~~~~~~~~~~~~~ 256 (262)
T 2ekc_A 196 KKVEEYRELC--DKPVVVGFGVSKKEHARE-IGSFADGVVVGSALVKLAGQKKIEDLGNLVKEL 256 (262)
T ss_dssp HHHHHHHHHC--CSCEEEESSCCSHHHHHH-HHTTSSEEEECHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHhhc--CCCEEEeCCCCCHHHHHH-HHcCCCEEEECHHHHhhhhhhhHHHHHHHHHHH
Confidence 5666776665 799999999999999999 889999999999998764322233344433333
|
| >3ndo_A Deoxyribose-phosphate aldolase; ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, ALS collaborative crystallography; HET: GOL; 1.25A {Mycobacterium smegmatis} PDB: 3ng3_A | Back alignment and structure |
|---|
Probab=98.43 E-value=4.3e-06 Score=76.16 Aligned_cols=90 Identities=20% Similarity=0.187 Sum_probs=67.5
Q ss_pred CHHHHHHHHHhcCCCEEEEec-----c----CHHH--------HHcCCcEEEEcCCCccCCCCCcchHHHHHHHHHHcCC
Q 017781 213 SWKDVKWLQTITKLPILVKGV-----L----TAED--------VQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQG 275 (366)
Q Consensus 213 ~~~~i~~lr~~~~~pv~vK~v-----~----~~~d--------~~aGad~I~vs~~gg~~~~~~~~~~~~l~~i~~~~~~ 275 (366)
..++|+.+++..+ ...+|.+ + +.++ .++|+|+|..|...+ ..+..+.+.+...++.+++
T Consensus 114 v~~ei~~v~~a~~-~~~lKvIiEt~~L~~~~t~eei~~a~~ia~~aGADfVKTSTGf~---~~~gAt~edv~lm~~~v~~ 189 (231)
T 3ndo_A 114 VSADITAVRKAVR-AATLKVIVESAALLEFSGEPLLADVCRVARDAGADFVKTSTGFH---PSGGASVQAVEIMARTVGE 189 (231)
T ss_dssp HHHHHHHHHHHTT-TSEEEEECCHHHHHHHTCHHHHHHHHHHHHHTTCSEEECCCSCC---TTCSCCHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHcc-CCceEEEEECcccCCCCCHHHHHHHHHHHHHHCcCEEEcCCCCC---CCCCCCHHHHHHHHHHhCC
Confidence 4467888888875 3456865 4 5544 899999999875211 0133567777777777777
Q ss_pred CceEEEecCCCCHHHHHHHHHhCcCEEEecH
Q 017781 276 RIPVFLDGGVRRGTDVFKALALGASGIFIGR 306 (366)
Q Consensus 276 ~i~vi~~GGI~~~~dv~kalalGAd~V~igr 306 (366)
+++|-++||||+.+|+.+.+.+||+-++..+
T Consensus 190 ~v~VKaaGGIrt~~~a~~~i~aGa~RiGtS~ 220 (231)
T 3ndo_A 190 RLGVKASGGIRTAEQAAAMLDAGATRLGLSG 220 (231)
T ss_dssp TSEEEEESSCCSHHHHHHHHHTTCSEEEESS
T ss_pred CceEEEeCCCCCHHHHHHHHHhcchhcccch
Confidence 9999999999999999999999999665543
|
| >1ub3_A Aldolase protein; schiff base, deoxyribose phosphate, carbinolamine, structural genomics, riken structural genomics/proteomics initiative; HET: HPD; 1.40A {Thermus thermophilus} SCOP: c.1.10.1 PDB: 1j2w_A* | Back alignment and structure |
|---|
Probab=98.39 E-value=6.5e-06 Score=74.63 Aligned_cols=164 Identities=21% Similarity=0.179 Sum_probs=100.2
Q ss_pred HHHHHHHHHcCCceecCCCCCCCHHHHhccCC--Cce--EEEeeec--CCHHHHHHHHHHHHHcCCCEEEEecCCCCCcc
Q 017781 91 YATARAASAAGTIMTLSSWSTSSVEEVASTGP--GIR--FFQLYVY--KDRNVVAQLVRRAERAGFKAIALTVDTPRLGR 164 (366)
Q Consensus 91 ~~la~aa~~~G~~~~vs~~~~~~~e~i~~~~~--~~~--~~Qly~~--~d~~~~~~~l~ra~~~G~~ai~vtvd~p~~g~ 164 (366)
..+.+.|.+.|+..++-. ..-++...+... ... ..--|+. ...+.....++.|.+.|++.+.+.+|...
T Consensus 22 ~~l~~~a~~~~~~aVcv~--p~~v~~~~~~l~~~~v~v~~vigFP~G~~~~~~k~~e~~~Ai~~GAdevd~vinig~--- 96 (220)
T 1ub3_A 22 AKAAEEALEYGFYGLCIP--PSYVAWVRARYPHAPFRLVTVVGFPLGYQEKEVKALEAALACARGADEVDMVLHLGR--- 96 (220)
T ss_dssp HHHHHHHHHHTCSEEECC--GGGHHHHHHHCTTCSSEEEEEESTTTCCSCHHHHHHHHHHHHHTTCSEEEEECCHHH---
T ss_pred HHHHHHHHHhCCCEEEEC--HHHHHHHHHHhCCCCceEEEEecCCCCCCchHHHHHHHHHHHHcCCCEEEecccchh---
Confidence 367788888887665421 111222222111 111 1111222 33444455667778899999988776210
Q ss_pred hhHHHhhhcCCCCccccccccccccCCCccccchhhHHHhhhccCCCCCHHHHHHHHHhcCCCEEEEec-----cCHHH-
Q 017781 165 READIKNRFTLPPFLTLKNFQGLDLGKMDEANDSGLAAYVAGQIDRSLSWKDVKWLQTITKLPILVKGV-----LTAED- 238 (366)
Q Consensus 165 r~~d~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~i~~lr~~~~~pv~vK~v-----~~~~d- 238 (366)
... ++.+...+++..+++..+.+ .+|.+ ++.++
T Consensus 97 --------------------------------------~~~--g~~~~v~~ei~~v~~a~~~~-~lkvIlet~~l~~e~i 135 (220)
T 1ub3_A 97 --------------------------------------AKA--GDLDYLEAEVRAVREAVPQA-VLKVILETGYFSPEEI 135 (220)
T ss_dssp --------------------------------------HHT--TCHHHHHHHHHHHHHHSTTS-EEEEECCGGGSCHHHH
T ss_pred --------------------------------------hhC--CCHHHHHHHHHHHHHHHcCC-CceEEEecCCCCHHHH
Confidence 000 11222456788888877544 77754 35554
Q ss_pred -------HHcCCcEEEEcCCCccCCCCCcchHHHHHHHHHHcCCCceEEEecCCCCHHHHHHHHHhCcCEEEe
Q 017781 239 -------VQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFI 304 (366)
Q Consensus 239 -------~~aGad~I~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~i~vi~~GGI~~~~dv~kalalGAd~V~i 304 (366)
.++|||+|..|...+ .+..+.+.+..+++.++.++||-++||||+.+|+++.+.+||+-++.
T Consensus 136 ~~a~~ia~eaGADfVKTsTGf~----~~gat~~dv~~m~~~vg~~v~VkaaGGirt~~~al~~i~aGa~RiG~ 204 (220)
T 1ub3_A 136 ARLAEAAIRGGADFLKTSTGFG----PRGASLEDVALLVRVAQGRAQVKAAGGIRDRETALRMLKAGASRLGT 204 (220)
T ss_dssp HHHHHHHHHHTCSEEECCCSSS----SCCCCHHHHHHHHHHHTTSSEEEEESSCCSHHHHHHHHHTTCSEEEE
T ss_pred HHHHHHHHHhCCCEEEeCCCCC----CCCCCHHHHHHHHHhhCCCCeEEEECCCCCHHHHHHHHHCCCcccch
Confidence 899999999875211 12245566666666666689999999999999999999999994443
|
| >2p10_A MLL9387 protein; putative phosphonopyruvate hydrolase, structural genomics, J center for structural genomics, JCSG; HET: MSE; 2.15A {Mesorhizobium loti} SCOP: c.1.12.9 | Back alignment and structure |
|---|
Probab=98.33 E-value=5.4e-05 Score=70.39 Aligned_cols=209 Identities=15% Similarity=0.194 Sum_probs=120.3
Q ss_pred CCceEecccccccccCChhhHHHHHHHHHcCCceecC------------CCCCC---------CH---HHHhccCC-Cce
Q 017781 71 SMPIMIAPTAMQKMAHPEGEYATARAASAAGTIMTLS------------SWSTS---------SV---EEVASTGP-GIR 125 (366)
Q Consensus 71 ~~Pi~iApm~~~~l~~~~~e~~la~aa~~~G~~~~vs------------~~~~~---------~~---e~i~~~~~-~~~ 125 (366)
..||+-+..| .+ -.|+.+++-|+.+.+- +.+.. .+ +|+....+ .|.
T Consensus 27 ~~~iig~gaG-tG--------lsAk~~e~gGaDlii~ynsGrfR~~G~~slag~lpygnaN~iv~e~~~evlp~v~~iPV 97 (286)
T 2p10_A 27 GEPIIGGGAG-TG--------LSAKSEEAGDIDLIVIYNSGRYRMAGRGSLAGLLAYGNANQIVVDMAREVLPVVRHTPV 97 (286)
T ss_dssp TCCEEEEEES-SH--------HHHHHHHHTTCSEEEECHHHHHHHTTCCGGGGGBTEEEHHHHHHHHHHHHGGGCSSSCE
T ss_pred CCceEEEecc-cc--------hhhHHHHhCCCCEEEEeccchhhhcCccchhhhccccCHHHHHHHHHHhhhccCCCCCE
Confidence 4677665543 33 4899999999998862 11110 01 13333333 589
Q ss_pred EEEeeecCCHHHHHHHHHHHHHcCCCEEEEecCCCCCcchhHHHhhhcCCCCccccccccccccCCCccccchhhHHHhh
Q 017781 126 FFQLYVYKDRNVVAQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLTLKNFQGLDLGKMDEANDSGLAAYVA 205 (366)
Q Consensus 126 ~~Qly~~~d~~~~~~~l~ra~~~G~~ai~vtvd~p~~g~r~~d~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 205 (366)
|+|+........+...++.++++|+.++ + |.|..|.-.-..|+. +.
T Consensus 98 ~Agv~~~DP~~~~g~~Le~lk~~Gf~Gv-~--N~ptvglidG~fr~~-------------------------------LE 143 (286)
T 2p10_A 98 LAGVNGTDPFMVMSTFLRELKEIGFAGV-Q--NFPTVGLIDGLFRQN-------------------------------LE 143 (286)
T ss_dssp EEEECTTCTTCCHHHHHHHHHHHTCCEE-E--ECSCGGGCCHHHHHH-------------------------------HH
T ss_pred EEEECCcCCCcCHHHHHHHHHHhCCceE-E--ECCCcccccchhhhh-------------------------------Hh
Confidence 9997643333457778899999999998 4 556443221111111 11
Q ss_pred hccCCCCCHHH-HHHHHHhc-CCCEEEEeccCHHH----HHcCCcEEEEcCC---CccC-CCCCcc--h-HHHHHHHH--
Q 017781 206 GQIDRSLSWKD-VKWLQTIT-KLPILVKGVLTAED----VQAGAAGIIVSNH---GARQ-LDYVPA--T-IMALEEVV-- 270 (366)
Q Consensus 206 ~~~d~~~~~~~-i~~lr~~~-~~pv~vK~v~~~~d----~~aGad~I~vs~~---gg~~-~~~~~~--~-~~~l~~i~-- 270 (366)
...+.++. ++-++..- ..-+.+--+.++++ .++|+|.|++.-. ||.- .....+ . .+.+.++.
T Consensus 144 ---E~gm~~~~eve~I~~A~~~gL~Ti~~v~~~eeA~amA~agpDiI~~h~glT~gglIG~~~avs~~~~~e~i~~i~~a 220 (286)
T 2p10_A 144 ---ETGMSYAQEVEMIAEAHKLDLLTTPYVFSPEDAVAMAKAGADILVCHMGLTTGGAIGARSGKSMDDCVSLINECIEA 220 (286)
T ss_dssp ---HTTCCHHHHHHHHHHHHHTTCEECCEECSHHHHHHHHHHTCSEEEEECSCC---------CCCHHHHHHHHHHHHHH
T ss_pred ---hcCCCHHHHHHHHHHHHHCCCeEEEecCCHHHHHHHHHcCCCEEEECCCCCCCCcccCCCcccHHHhHHHHHHHHHH
Confidence 11234433 33333322 12244445678887 9999999998643 2210 011111 1 23344443
Q ss_pred -HHcCCCceEEEec-CCCCHHHHHHHHHh--CcCEEEecHHHHHHhhhcCHHHHHHHHHHHHHHHH
Q 017781 271 -KATQGRIPVFLDG-GVRRGTDVFKALAL--GASGIFIGRPVVYSLAAEGEKGVRRVLEMLREEFE 332 (366)
Q Consensus 271 -~~~~~~i~vi~~G-GI~~~~dv~kalal--GAd~V~igr~~l~~l~~~G~~gv~~~~~~l~~el~ 332 (366)
+.+..++-|+.-| ||.+++|+.+++.+ |++++..++.+... + ++..+..+.++++
T Consensus 221 ~~~vnpdvivLc~gGpIstpeDv~~~l~~t~G~~G~~gASsier~------p-~e~ai~~~~~~fk 279 (286)
T 2p10_A 221 ARTIRDDIIILSHGGPIANPEDARFILDSCQGCHGFYGASSMERL------P-AEEAIRSQTLAFK 279 (286)
T ss_dssp HHHHCSCCEEEEESTTCCSHHHHHHHHHHCTTCCEEEESHHHHHH------H-HHHHHHHHHHHHH
T ss_pred HHHhCCCcEEEecCCCCCCHHHHHHHHhcCCCccEEEeehhhhcC------C-HHHHHHHHHHHHH
Confidence 3344567666666 99999999999999 99999999988764 2 4555555555554
|
| >3ovp_A Ribulose-phosphate 3-epimerase; iron binding, isomerase; HET: XPE; 1.70A {Homo sapiens} SCOP: c.1.2.0 PDB: 3ovq_A* 3ovr_A* 3qc3_A | Back alignment and structure |
|---|
Probab=98.33 E-value=1.5e-05 Score=72.60 Aligned_cols=71 Identities=24% Similarity=0.277 Sum_probs=52.1
Q ss_pred cchHHHHHHHHHHcCCCceEEEecCCCCHHHHHHHHHhCcCEEEecHHHHHHhhhcCHHHHHHHHHHHHHHHHHHHHHc
Q 017781 260 PATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFIGRPVVYSLAAEGEKGVRRVLEMLREEFELAMALS 338 (366)
Q Consensus 260 ~~~~~~l~~i~~~~~~~i~vi~~GGI~~~~dv~kalalGAd~V~igr~~l~~l~~~G~~gv~~~~~~l~~el~~~m~~~ 338 (366)
+..++-+.++++.. .+++|.++|||+ .+.+.++..+|||.+.+||++..+ + -....++.++++++......
T Consensus 154 ~~~l~ki~~lr~~~-~~~~I~VdGGI~-~~t~~~~~~aGAd~~VvGsaIf~a-----~-dp~~~~~~l~~~~~~~~~~~ 224 (228)
T 3ovp_A 154 EDMMPKVHWLRTQF-PSLDIEVDGGVG-PDTVHKCAEAGANMIVSGSAIMRS-----E-DPRSVINLLRNVCSEAAQKR 224 (228)
T ss_dssp GGGHHHHHHHHHHC-TTCEEEEESSCS-TTTHHHHHHHTCCEEEESHHHHTC-----S-CHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHhc-CCCCEEEeCCcC-HHHHHHHHHcCCCEEEEeHHHhCC-----C-CHHHHHHHHHHHHHHHHhhc
Confidence 44666777777654 368999999995 889999999999999999987532 1 12345667777777666543
|
| >2yzr_A Pyridoxal biosynthesis lyase PDXS; redox protein, pyridoxal phosphate, structural genomi NPPSFA; 2.30A {Methanocaldococcus jannaschii} | Back alignment and structure |
|---|
Probab=98.33 E-value=3.5e-06 Score=80.08 Aligned_cols=46 Identities=39% Similarity=0.629 Sum_probs=39.7
Q ss_pred HHHHHHHHHcCCCceE--EEecCCCCHHHHHHHHHhCcCEEEecHHHHHH
Q 017781 264 MALEEVVKATQGRIPV--FLDGGVRRGTDVFKALALGASGIFIGRPVVYS 311 (366)
Q Consensus 264 ~~l~~i~~~~~~~i~v--i~~GGI~~~~dv~kalalGAd~V~igr~~l~~ 311 (366)
+.|+++.+.. ++|| ++.|||.+++|+.+++.+|||+|+||+.++.+
T Consensus 230 ell~~i~~~~--~IPVV~VAeGGI~Tpeda~~~l~~GaDgV~VGsaI~~a 277 (330)
T 2yzr_A 230 EVLLEVKKLG--RLPVVNFAAGGVATPADAALMMQLGSDGVFVGSGIFKS 277 (330)
T ss_dssp HHHHHHHHHT--SCSSEEEECSCCCSHHHHHHHHHTTCSCEEESHHHHTS
T ss_pred HHHHHHHHhC--CCCeEEEEECCCCCHHHHHHHHHcCcCEEeeHHHHhcC
Confidence 6666776655 7888 69999999999999999999999999998753
|
| >3f4w_A Putative hexulose 6 phosphate synthase; humps, malonate, lyase; 1.65A {Salmonella typhimurium} SCOP: c.1.2.0 | Back alignment and structure |
|---|
Probab=98.32 E-value=5.1e-06 Score=74.18 Aligned_cols=89 Identities=17% Similarity=0.210 Sum_probs=61.6
Q ss_pred HHHHHHhcCCCEEEEe--ccCHHH-----HHcCCcEEEEcCC-CccCCCCCcchHHHHHHHHHHcCCCceEEEecCCCCH
Q 017781 217 VKWLQTITKLPILVKG--VLTAED-----VQAGAAGIIVSNH-GARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRG 288 (366)
Q Consensus 217 i~~lr~~~~~pv~vK~--v~~~~d-----~~aGad~I~vs~~-gg~~~~~~~~~~~~l~~i~~~~~~~i~vi~~GGI~~~ 288 (366)
++.+++. ++++++-. ..++.+ .+.|+|+|.+... +|.. .++..++.+.++++.++ ++||+++|||+ +
T Consensus 96 ~~~~~~~-g~~~~v~~~~~~t~~~~~~~~~~~g~d~i~v~~g~~g~~--~~~~~~~~i~~l~~~~~-~~~i~~~gGI~-~ 170 (211)
T 3f4w_A 96 IRAAKEA-GKQVVVDMICVDDLPARVRLLEEAGADMLAVHTGTDQQA--AGRKPIDDLITMLKVRR-KARIAVAGGIS-S 170 (211)
T ss_dssp HHHHHHH-TCEEEEECTTCSSHHHHHHHHHHHTCCEEEEECCHHHHH--TTCCSHHHHHHHHHHCS-SCEEEEESSCC-T
T ss_pred HHHHHHc-CCeEEEEecCCCCHHHHHHHHHHcCCCEEEEcCCCcccc--cCCCCHHHHHHHHHHcC-CCcEEEECCCC-H
Confidence 4444443 55655431 234322 7899999887532 1211 12235677888887753 69999999996 9
Q ss_pred HHHHHHHHhCcCEEEecHHHHH
Q 017781 289 TDVFKALALGASGIFIGRPVVY 310 (366)
Q Consensus 289 ~dv~kalalGAd~V~igr~~l~ 310 (366)
+++.+++.+|||+|.+||+++.
T Consensus 171 ~~~~~~~~~Gad~vvvGsai~~ 192 (211)
T 3f4w_A 171 QTVKDYALLGPDVVIVGSAITH 192 (211)
T ss_dssp TTHHHHHTTCCSEEEECHHHHT
T ss_pred HHHHHHHHcCCCEEEECHHHcC
Confidence 9999999999999999998864
|
| >1yad_A Regulatory protein TENI; TIM barrel, transcription; 2.10A {Bacillus subtilis} PDB: 3qh2_A* | Back alignment and structure |
|---|
Probab=98.27 E-value=8.4e-06 Score=73.46 Aligned_cols=92 Identities=18% Similarity=0.153 Sum_probs=63.6
Q ss_pred CHHHHHHHHHhcCCCEEEEeccCHHH----HHcCCcEEEEcCCCccC-CCC-CcchHHHHHHHHHHcCCCceEEEecCCC
Q 017781 213 SWKDVKWLQTITKLPILVKGVLTAED----VQAGAAGIIVSNHGARQ-LDY-VPATIMALEEVVKATQGRIPVFLDGGVR 286 (366)
Q Consensus 213 ~~~~i~~lr~~~~~pv~vK~v~~~~d----~~aGad~I~vs~~gg~~-~~~-~~~~~~~l~~i~~~~~~~i~vi~~GGI~ 286 (366)
..+.++.++. +..+.+ .+.+.++ .+.|+|+|.+++..+.+ ..+ .+..++.+.++++.+ ++||+++|||
T Consensus 100 ~~~~~~~~~~--~~~ig~-sv~t~~~~~~a~~~gaD~i~~~~~f~~~~~~g~~~~~~~~l~~~~~~~--~~pvia~GGI- 173 (221)
T 1yad_A 100 SPKQIRARFP--HLHIGR-SVHSLEEAVQAEKEDADYVLFGHVFETDCKKGLEGRGVSLLSDIKQRI--SIPVIAIGGM- 173 (221)
T ss_dssp CHHHHHHHCT--TCEEEE-EECSHHHHHHHHHTTCSEEEEECCC----------CHHHHHHHHHHHC--CSCEEEESSC-
T ss_pred CHHHHHHHCC--CCEEEE-EcCCHHHHHHHHhCCCCEEEECCccccCCCCCCCCCCHHHHHHHHHhC--CCCEEEECCC-
Confidence 3344444432 333333 3456666 78999999987642222 111 234678888887776 7999999999
Q ss_pred CHHHHHHHHHhCcCEEEecHHHHH
Q 017781 287 RGTDVFKALALGASGIFIGRPVVY 310 (366)
Q Consensus 287 ~~~dv~kalalGAd~V~igr~~l~ 310 (366)
+++++.+++++||++|.+|+.++.
T Consensus 174 ~~~nv~~~~~~Ga~gv~vgs~i~~ 197 (221)
T 1yad_A 174 TPDRLRDVKQAGADGIAVMSGIFS 197 (221)
T ss_dssp CGGGHHHHHHTTCSEEEESHHHHT
T ss_pred CHHHHHHHHHcCCCEEEEhHHhhC
Confidence 999999999999999999999864
|
| >3tjl_A NADPH dehydrogenase; OLD yellow enzyme, flavin mononucleotide, TIM barrel, NADPH oxidoreductase, enone reductase; HET: FMN; 1.50A {Scheffersomyces stipitis cbs 6054} PDB: 3upw_A* 4df2_A* | Back alignment and structure |
|---|
Probab=98.24 E-value=9.8e-07 Score=86.99 Aligned_cols=98 Identities=18% Similarity=0.061 Sum_probs=68.2
Q ss_pred CCCHHHHHHHHHhcC-CCEEEEecc-----------C----HHH-----------HHcC--CcEEEEcCCC-ccCCCCCc
Q 017781 211 SLSWKDVKWLQTITK-LPILVKGVL-----------T----AED-----------VQAG--AAGIIVSNHG-ARQLDYVP 260 (366)
Q Consensus 211 ~~~~~~i~~lr~~~~-~pv~vK~v~-----------~----~~d-----------~~aG--ad~I~vs~~g-g~~~~~~~ 260 (366)
.+..+.++.+|+.++ -||.+|... + .++ .++| +|+|.|+... ..+.+..+
T Consensus 219 r~~~ei~~av~~~~~~~~v~~r~~~~~~~~g~~~~~d~~~~~~~~~~l~~~L~~~~~~G~~l~ylhv~~~~~~~~~~~~~ 298 (407)
T 3tjl_A 219 RLILELIDHLSTIVGADKIGIRISPWATFQNMKAHKDTVHPLTTFSYLVHELQQRADKGQGIAYISVVEPRVSGNVDVSE 298 (407)
T ss_dssp HHHHHHHHHHHHHHCGGGEEEEECTTCCGGGCCGGGSSSCHHHHHHHHHHHHHHHHHTTCCCSEEEEECTTEETTEECCG
T ss_pred HHHHHHHHHHHHHhCCCeEEEEECcccccCCCcccccccccHHHHHHHHHHHHhHhhcCCceeEEEEEccccCCCCcCCc
Confidence 356788999999985 489999763 2 111 2348 9999997421 11111111
Q ss_pred c-hHHHHHHHHHHcCCCceEEEecCCCCHHHHHHHHHh---C-cCEEEecHHHHH
Q 017781 261 A-TIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALAL---G-ASGIFIGRPVVY 310 (366)
Q Consensus 261 ~-~~~~l~~i~~~~~~~i~vi~~GGI~~~~dv~kalal---G-Ad~V~igr~~l~ 310 (366)
. .+..+..+++.. ++|||++|||.+..|+.+++.. | ||+|++||+|+.
T Consensus 299 ~~~~~~~~~ir~~~--~~PvI~~Ggi~~~~dA~~~i~~~~~g~aDlVa~GR~~ia 351 (407)
T 3tjl_A 299 EDQAGDNEFVSKIW--KGVILKAGNYSYDAPEFKTLKEDIADKRTLVGFSRYFTS 351 (407)
T ss_dssp GGCCCCSHHHHHHC--CSEEEEESCGGGGTTTTHHHHHHHTTSSEEEECSHHHHH
T ss_pred cchhHHHHHHHHHh--CCCEEecCCCCCHHHHHHHHHhhccCCCeEEEeChhhhh
Confidence 1 113345566666 6899999999999988888876 5 999999999986
|
| >4e38_A Keto-hydroxyglutarate-aldolase/keto-deoxy-phospho aldolase; lyase; 1.64A {Vibrionales bacterium swat-3} | Back alignment and structure |
|---|
Probab=98.24 E-value=8.8e-06 Score=74.25 Aligned_cols=167 Identities=15% Similarity=0.140 Sum_probs=106.9
Q ss_pred EEEeeecCCHHHHHHHHHHHHHcCCCEEEEecCCCCCcchhHHHhhhcCCCCccccccccccccCCCccccchhhHHHhh
Q 017781 126 FFQLYVYKDRNVVAQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLTLKNFQGLDLGKMDEANDSGLAAYVA 205 (366)
Q Consensus 126 ~~Qly~~~d~~~~~~~l~ra~~~G~~ai~vtvd~p~~g~r~~d~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 205 (366)
.+-+....+.+...++++.+.+.|++.+-+|++.|..-.-.+.++..+ |. +... ..........+........++.
T Consensus 36 vv~Vir~~~~~~a~~~a~al~~gGi~~iEvt~~t~~a~e~I~~l~~~~--~~-~~iG-aGTVlt~~~a~~Ai~AGA~fIv 111 (232)
T 4e38_A 36 VIPVIAIDNAEDIIPLGKVLAENGLPAAEITFRSDAAVEAIRLLRQAQ--PE-MLIG-AGTILNGEQALAAKEAGATFVV 111 (232)
T ss_dssp EEEEECCSSGGGHHHHHHHHHHTTCCEEEEETTSTTHHHHHHHHHHHC--TT-CEEE-EECCCSHHHHHHHHHHTCSEEE
T ss_pred EEEEEEcCCHHHHHHHHHHHHHCCCCEEEEeCCCCCHHHHHHHHHHhC--CC-CEEe-ECCcCCHHHHHHHHHcCCCEEE
Confidence 445555678888888888899999999999998876444444455544 21 1110 0000000000000001111221
Q ss_pred hccCCCCCHHHHHHHHHhcCCCEEEEeccCHHH----HHcCCcEEEEcCCCccCCCCCcchHHHHHHHHHHcCCCceEEE
Q 017781 206 GQIDRSLSWKDVKWLQTITKLPILVKGVLTAED----VQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFL 281 (366)
Q Consensus 206 ~~~d~~~~~~~i~~lr~~~~~pv~vK~v~~~~d----~~aGad~I~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~i~vi~ 281 (366)
-|.++.+.++..++. ++|++. |+.|+.+ .++|+|.|.+.-.. .. + ..+.|+.++..++ ++|+++
T Consensus 112 ---sP~~~~~vi~~~~~~-gi~~ip-Gv~TptEi~~A~~~Gad~vK~FPa~--~~-g---G~~~lkal~~p~p-~ip~~p 179 (232)
T 4e38_A 112 ---SPGFNPNTVRACQEI-GIDIVP-GVNNPSTVEAALEMGLTTLKFFPAE--AS-G---GISMVKSLVGPYG-DIRLMP 179 (232)
T ss_dssp ---CSSCCHHHHHHHHHH-TCEEEC-EECSHHHHHHHHHTTCCEEEECSTT--TT-T---HHHHHHHHHTTCT-TCEEEE
T ss_pred ---eCCCCHHHHHHHHHc-CCCEEc-CCCCHHHHHHHHHcCCCEEEECcCc--cc-c---CHHHHHHHHHHhc-CCCeee
Confidence 245667778777764 887666 6789888 99999999985421 11 1 3466777765553 799999
Q ss_pred ecCCCCHHHHHHHHHhCcCEEEecHHHH
Q 017781 282 DGGVRRGTDVFKALALGASGIFIGRPVV 309 (366)
Q Consensus 282 ~GGI~~~~dv~kalalGAd~V~igr~~l 309 (366)
.|||. .+++..++++||.+|.+|+.+.
T Consensus 180 tGGI~-~~n~~~~l~aGa~~~vgGs~l~ 206 (232)
T 4e38_A 180 TGGIT-PSNIDNYLAIPQVLACGGTWMV 206 (232)
T ss_dssp BSSCC-TTTHHHHHTSTTBCCEEECGGG
T ss_pred EcCCC-HHHHHHHHHCCCeEEEECchhc
Confidence 99995 8999999999999999998764
|
| >1vc4_A Indole-3-glycerol phosphate synthase; lyase, tryptophan biosynthesis, riken structural genomics/PR initiative, RSGI, structural genomics; 1.80A {Thermus thermophilus} SCOP: c.1.2.4 | Back alignment and structure |
|---|
Probab=98.24 E-value=4.1e-06 Score=77.59 Aligned_cols=75 Identities=15% Similarity=0.193 Sum_probs=55.2
Q ss_pred ccCHHH----HHcCCcEEEEcCCCccCCCCCcchHHHHHHHHHHcCC---CceEEEecCCCCHHHHHHHHHhCcCEEEec
Q 017781 233 VLTAED----VQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQG---RIPVFLDGGVRRGTDVFKALALGASGIFIG 305 (366)
Q Consensus 233 v~~~~d----~~aGad~I~vs~~gg~~~~~~~~~~~~l~~i~~~~~~---~i~vi~~GGI~~~~dv~kalalGAd~V~ig 305 (366)
+.++++ .+.|+|.|-+.|...+.. ...++.+.++++.++. ++|+++.|||.+++|+.++.. |||+|.||
T Consensus 161 v~~~~E~~~a~~~gad~IGvn~~~l~~~---~~dl~~~~~L~~~i~~~~~~~~vIAegGI~s~~dv~~l~~-Ga~gvlVG 236 (254)
T 1vc4_A 161 VHTERELEIALEAGAEVLGINNRDLATL---HINLETAPRLGRLARKRGFGGVLVAESGYSRKEELKALEG-LFDAVLIG 236 (254)
T ss_dssp ECSHHHHHHHHHHTCSEEEEESBCTTTC---CBCTTHHHHHHHHHHHTTCCSEEEEESCCCSHHHHHTTTT-TCSEEEEC
T ss_pred ECCHHHHHHHHHcCCCEEEEccccCcCC---CCCHHHHHHHHHhCccccCCCeEEEEcCCCCHHHHHHHHc-CCCEEEEe
Confidence 345555 778888887776543222 2234455555555543 689999999999999999999 99999999
Q ss_pred HHHHHH
Q 017781 306 RPVVYS 311 (366)
Q Consensus 306 r~~l~~ 311 (366)
++++.+
T Consensus 237 sAl~~~ 242 (254)
T 1vc4_A 237 TSLMRA 242 (254)
T ss_dssp HHHHTS
T ss_pred HHHcCC
Confidence 999864
|
| >1qo2_A Molecule: N-((5-phosphoribosyl)-formimino)-5-aminoimidazol- 4-carboxamid ribonucleotid...; isomerase, histidine biosynthesis; 1.85A {Thermotoga maritima} SCOP: c.1.2.1 PDB: 2cff_A 2w79_A | Back alignment and structure |
|---|
Probab=98.19 E-value=3.5e-06 Score=77.03 Aligned_cols=70 Identities=14% Similarity=0.244 Sum_probs=57.5
Q ss_pred HHcCCcEEEEcCCCccCCCCCcchHHHHHHHHHHcCCCceEEEecCCCCHHHHHHHHHh-----C-cCEEEecHHHHHH
Q 017781 239 VQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALAL-----G-ASGIFIGRPVVYS 311 (366)
Q Consensus 239 ~~aGad~I~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~i~vi~~GGI~~~~dv~kalal-----G-Ad~V~igr~~l~~ 311 (366)
.++|++.|.+++....+...+ +.++.+.++++.+ ++|||++|||++++|+.+++.+ | ||+|++|++++.+
T Consensus 154 ~~~G~~~i~~t~~~~~g~~~g-~~~~~i~~l~~~~--~iPvia~GGI~~~~d~~~~~~~~~~~~G~adgv~vgsal~~~ 229 (241)
T 1qo2_A 154 KEYGLEEIVHTEIEKDGTLQE-HDFSLTKKIAIEA--EVKVLAAGGISSENSLKTAQKVHTETNGLLKGVIVGRAFLEG 229 (241)
T ss_dssp HTTTCCEEEEEETTHHHHTCC-CCHHHHHHHHHHH--TCEEEEESSCCSHHHHHHHHHHHHHTTTSEEEEEECHHHHTT
T ss_pred HhCCCCEEEEEeecccccCCc-CCHHHHHHHHHhc--CCcEEEECCCCCHHHHHHHHhcccccCCeEeEEEeeHHHHcC
Confidence 789999999876431111123 3688999999888 8999999999999999999998 9 9999999999764
|
| >2htm_A Thiazole biosynthesis protein THIG; thiamin biosynthesis, THIG, thermus thermophilus HB8, structural genomics, NPPSFA; 2.30A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=98.17 E-value=5e-06 Score=76.66 Aligned_cols=93 Identities=15% Similarity=0.147 Sum_probs=63.8
Q ss_pred CHHHHHHHHHhcCCCEEEEeccCHHH----HHcCCcEEEEcCC-CccCCCCCcchHHHHHHHHH-HcCCC-ceEEEecCC
Q 017781 213 SWKDVKWLQTITKLPILVKGVLTAED----VQAGAAGIIVSNH-GARQLDYVPATIMALEEVVK-ATQGR-IPVFLDGGV 285 (366)
Q Consensus 213 ~~~~i~~lr~~~~~pv~vK~v~~~~d----~~aGad~I~vs~~-gg~~~~~~~~~~~~l~~i~~-~~~~~-i~vi~~GGI 285 (366)
+++..+.+.+. +..++-....++.- .++|+++|.--+. -|+ ..|..+.+.|..+++ .. + +|||++|||
T Consensus 113 tv~aa~~L~k~-Gf~Vlpy~~~D~~~ak~l~~~G~~aVmPlg~pIGs--G~Gi~~~~~L~~i~~~~~--~~vPVI~~GGI 187 (268)
T 2htm_A 113 TLKAAERLIEE-DFLVLPYMGPDLVLAKRLAALGTATVMPLAAPIGS--GWGVRTRALLELFAREKA--SLPPVVVDAGL 187 (268)
T ss_dssp HHHHHHHHHHT-TCEECCEECSCHHHHHHHHHHTCSCBEEBSSSTTT--CCCSTTHHHHHHHHHTTT--TSSCBEEESCC
T ss_pred HHHHHHHHHHC-CCEEeeccCCCHHHHHHHHhcCCCEEEecCccCcC--CcccCCHHHHHHHHHhcC--CCCeEEEeCCC
Confidence 34444444442 33333233455543 8899999965232 121 124456677888877 43 6 999999999
Q ss_pred CCHHHHHHHHHhCcCEEEecHHHHH
Q 017781 286 RRGTDVFKALALGASGIFIGRPVVY 310 (366)
Q Consensus 286 ~~~~dv~kalalGAd~V~igr~~l~ 310 (366)
.+++|+.+++.+|||+|++|+.+..
T Consensus 188 ~tpsDAa~AmeLGAdgVlVgSAI~~ 212 (268)
T 2htm_A 188 GLPSHAAEVMELGLDAVLVNTAIAE 212 (268)
T ss_dssp CSHHHHHHHHHTTCCEEEESHHHHT
T ss_pred CCHHHHHHHHHcCCCEEEEChHHhC
Confidence 9999999999999999999998864
|
| >1vzw_A Phosphoribosyl isomerase A; histidine biosynthesis, tryptophan biosynthesis; 1.8A {Streptomyces coelicolor} SCOP: c.1.2.1 PDB: 2vep_A 2x30_A | Back alignment and structure |
|---|
Probab=98.16 E-value=5.8e-06 Score=75.59 Aligned_cols=67 Identities=25% Similarity=0.353 Sum_probs=54.6
Q ss_pred HHcCCcEEEEcCC--CccCCCCCcchHHHHHHHHHHcCCCceEEEecCCCCHHHHHHHHHh---CcCEEEecHHHHH
Q 017781 239 VQAGAAGIIVSNH--GARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALAL---GASGIFIGRPVVY 310 (366)
Q Consensus 239 ~~aGad~I~vs~~--gg~~~~~~~~~~~~l~~i~~~~~~~i~vi~~GGI~~~~dv~kalal---GAd~V~igr~~l~ 310 (366)
.+.|+|.|.+++. +|. ..+ ..++.+.++++.+ ++||+++|||++++|+.+++++ |||+|++|++++.
T Consensus 156 ~~~G~~~i~~~~~~~~~~--~~g-~~~~~~~~i~~~~--~ipvia~GGI~~~~d~~~~~~~~~~Gadgv~vG~al~~ 227 (244)
T 1vzw_A 156 NKEGCARYVVTDIAKDGT--LQG-PNLELLKNVCAAT--DRPVVASGGVSSLDDLRAIAGLVPAGVEGAIVGKALYA 227 (244)
T ss_dssp HHTTCCCEEEEEC---------C-CCHHHHHHHHHTC--SSCEEEESCCCSHHHHHHHHTTGGGTEEEEEECHHHHT
T ss_pred HhCCCCEEEEeccCcccc--cCC-CCHHHHHHHHHhc--CCCEEEECCCCCHHHHHHHHhhccCCCceeeeeHHHHc
Confidence 7899999988653 221 112 3688888988877 7999999999999999999999 9999999999875
|
| >1ka9_F Imidazole glycerol phosphtate synthase; riken structural genomics/proteomics initiative, RSGI, structural genomics, transferase; 2.30A {Thermus thermophilus} SCOP: c.1.2.1 | Back alignment and structure |
|---|
Probab=98.16 E-value=5.5e-06 Score=75.94 Aligned_cols=70 Identities=20% Similarity=0.289 Sum_probs=56.6
Q ss_pred HHcCCcEEEEcCCCccCCCCCcchHHHHHHHHHHcCCCceEEEecCCCCHHHHHHHHHhCcCEEEecHHHHHH
Q 017781 239 VQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFIGRPVVYS 311 (366)
Q Consensus 239 ~~aGad~I~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~i~vi~~GGI~~~~dv~kalalGAd~V~igr~~l~~ 311 (366)
.+.|++.|.+++.+..+...++ .++.+.++++.+ ++|||+.|||++.+|+.+++.+|||+|++|+.++.+
T Consensus 162 ~~~G~~~i~~~~~~~~g~~~g~-~~~~i~~l~~~~--~ipvia~GGI~~~~d~~~~~~~Gadgv~vgsal~~~ 231 (252)
T 1ka9_F 162 VELGAGEILLTSMDRDGTKEGY-DLRLTRMVAEAV--GVPVIASGGAGRMEHFLEAFQAGAEAALAASVFHFG 231 (252)
T ss_dssp HHHTCCEEEEEETTTTTTCSCC-CHHHHHHHHHHC--SSCEEEESCCCSHHHHHHHHHTTCSEEEESHHHHTT
T ss_pred HHcCCCEEEEecccCCCCcCCC-CHHHHHHHHHHc--CCCEEEeCCCCCHHHHHHHHHCCCHHHHHHHHHHcC
Confidence 6889999987642211112233 688999999887 899999999999999999999999999999998753
|
| >1h5y_A HISF; histidine biosynthesis, TIM-barrel; 2.0A {Pyrobaculum aerophilum} SCOP: c.1.2.1 | Back alignment and structure |
|---|
Probab=98.15 E-value=6.2e-06 Score=75.03 Aligned_cols=69 Identities=22% Similarity=0.361 Sum_probs=55.0
Q ss_pred HHcCCcEEEEcCCCccCCCCCcchHHHHHHHHHHcCCCceEEEecCCCCHHHHHHHHHhCcCEEEecHHHHH
Q 017781 239 VQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFIGRPVVY 310 (366)
Q Consensus 239 ~~aGad~I~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~i~vi~~GGI~~~~dv~kalalGAd~V~igr~~l~ 310 (366)
.++|+|.|.+.+........+ ..++.+.++++.+ ++||+++|||.+.+|+.+++.+|||+|++|+.++.
T Consensus 164 ~~~G~d~i~~~~~~~~g~~~~-~~~~~i~~l~~~~--~~pvia~GGi~~~~~~~~~~~~Ga~~v~vgsal~~ 232 (253)
T 1h5y_A 164 EELGAGEILLTSIDRDGTGLG-YDVELIRRVADSV--RIPVIASGGAGRVEHFYEAAAAGADAVLAASLFHF 232 (253)
T ss_dssp HHHTCSEEEEEETTTTTTCSC-CCHHHHHHHHHHC--SSCEEEESCCCSHHHHHHHHHTTCSEEEESHHHHT
T ss_pred HhCCCCEEEEecccCCCCcCc-CCHHHHHHHHHhc--CCCEEEeCCCCCHHHHHHHHHcCCcHHHHHHHHHc
Confidence 788999999865321111112 3677888888876 79999999999999999999999999999999865
|
| >2y88_A Phosphoribosyl isomerase A; aromatic amino acid biosynthesis, TIM-barrel, His biosynthesis, tryptophan biosynthesis; HET: 2ER; 1.33A {Mycobacterium tuberculosis} PDB: 2y89_A 2y85_A* | Back alignment and structure |
|---|
Probab=98.14 E-value=3.1e-06 Score=77.30 Aligned_cols=69 Identities=22% Similarity=0.287 Sum_probs=55.5
Q ss_pred HHcCCcEEEEcCCCccCCCCCcchHHHHHHHHHHcCCCceEEEecCCCCHHHHHHHHHh---CcCEEEecHHHHH
Q 017781 239 VQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALAL---GASGIFIGRPVVY 310 (366)
Q Consensus 239 ~~aGad~I~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~i~vi~~GGI~~~~dv~kalal---GAd~V~igr~~l~ 310 (366)
.++|++.|.+++....+...+ ..++.+.++++.+ ++|||++|||.+.+|+.+++++ |||+|++||.++.
T Consensus 159 ~~~G~~~i~~~~~~~~~~~~g-~~~~~~~~l~~~~--~ipvia~GGI~~~~d~~~~~~~~~~Gad~v~vG~al~~ 230 (244)
T 2y88_A 159 DSEGCSRFVVTDITKDGTLGG-PNLDLLAGVADRT--DAPVIASGGVSSLDDLRAIATLTHRGVEGAIVGKALYA 230 (244)
T ss_dssp HHTTCCCEEEEETTTTTTTSC-CCHHHHHHHHTTC--SSCEEEESCCCSHHHHHHHHTTGGGTEEEEEECHHHHT
T ss_pred HhCCCCEEEEEecCCccccCC-CCHHHHHHHHHhC--CCCEEEECCCCCHHHHHHHHhhccCCCCEEEEcHHHHC
Confidence 788999998876321111123 3688888888766 7999999999999999999998 9999999999875
|
| >1thf_D HISF protein; thermophIle, TIM-barrel, histidine biosynthesis, lyase, phosphate-binding sites; 1.45A {Thermotoga maritima} SCOP: c.1.2.1 PDB: 2wjz_A 2a0n_A* 1gpw_A 1vh7_A 2rkx_A 3iio_A 3iip_A* 3iiv_A | Back alignment and structure |
|---|
Probab=98.11 E-value=6.1e-06 Score=75.71 Aligned_cols=69 Identities=16% Similarity=0.231 Sum_probs=54.9
Q ss_pred HHcCCcEEEEcCCCccCCCCCcchHHHHHHHHHHcCCCceEEEecCCCCHHHHHHHHHhCcCEEEecHHHHH
Q 017781 239 VQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFIGRPVVY 310 (366)
Q Consensus 239 ~~aGad~I~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~i~vi~~GGI~~~~dv~kalalGAd~V~igr~~l~ 310 (366)
.+.|++.|.++.........+ ..++.+.++++.+ ++|||++|||++.+|+.+++.+|||+|++|+.++.
T Consensus 161 ~~~G~~~i~~~~~~~~g~~~g-~~~~~~~~l~~~~--~ipvia~GGI~~~~d~~~~~~~Gadgv~vGsal~~ 229 (253)
T 1thf_D 161 EKRGAGEILLTSIDRDGTKSG-YDTEMIRFVRPLT--TLPIIASGGAGKMEHFLEAFLAGADAALAASVFHF 229 (253)
T ss_dssp HHTTCSEEEEEETTTTTSCSC-CCHHHHHHHGGGC--CSCEEEESCCCSHHHHHHHHHTTCSEEEESHHHHT
T ss_pred HHCCCCEEEEEeccCCCCCCC-CCHHHHHHHHHhc--CCCEEEECCCCCHHHHHHHHHcCChHHHHHHHHHc
Confidence 788999998864221111123 3678888888766 79999999999999999999999999999999875
|
| >3inp_A D-ribulose-phosphate 3-epimerase; IDP02542, isomerase, struc genomics, center for structural genomics of infectious DISE csgid; 2.05A {Francisella tularensis subsp} | Back alignment and structure |
|---|
Probab=98.11 E-value=3.6e-05 Score=70.89 Aligned_cols=133 Identities=19% Similarity=0.257 Sum_probs=87.3
Q ss_pred cCCHHHHHHHHHHHHHcCCCEEEEecCCCCCcchhHHHhhhcCCCCccccccccccccCCCccccchhhHHHhhhccCCC
Q 017781 132 YKDRNVVAQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLTLKNFQGLDLGKMDEANDSGLAAYVAGQIDRS 211 (366)
Q Consensus 132 ~~d~~~~~~~l~ra~~~G~~ai~vtvd~p~~g~r~~d~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~ 211 (366)
..|.....+.+++++++|++.+-+.+- .+.=+| +-.
T Consensus 36 saD~~~L~~~i~~l~~~G~d~lHvDVm------------Dg~FVp--------------------------------nit 71 (246)
T 3inp_A 36 SADLARLGDDVKAVLAAGADNIHFDVM------------DNHYVP--------------------------------NLT 71 (246)
T ss_dssp GSCGGGHHHHHHHHHHTTCCCEEEEEE------------BSSSSS--------------------------------CBC
T ss_pred cCChhhHHHHHHHHHHcCCCEEEEEec------------CCCcCc--------------------------------chh
Confidence 457777788899999999987654331 000011 012
Q ss_pred CCHHHHHHHHHhc-CCCEEEEec-cCHHH-----HHcCCcEEEEcCCCccC-----------------------------
Q 017781 212 LSWKDVKWLQTIT-KLPILVKGV-LTAED-----VQAGAAGIIVSNHGARQ----------------------------- 255 (366)
Q Consensus 212 ~~~~~i~~lr~~~-~~pv~vK~v-~~~~d-----~~aGad~I~vs~~gg~~----------------------------- 255 (366)
+....++.+|+.+ ++|+-+... .++++ .++|||+|+++.-....
T Consensus 72 ~G~~~v~~lr~~~p~~~ldvHLmv~~p~~~i~~~~~aGAd~itvH~Ea~~~~~~~i~~ir~~G~k~Gvalnp~Tp~e~l~ 151 (246)
T 3inp_A 72 FGPMVLKALRDYGITAGMDVHLMVKPVDALIESFAKAGATSIVFHPEASEHIDRSLQLIKSFGIQAGLALNPATGIDCLK 151 (246)
T ss_dssp CCHHHHHHHHHHTCCSCEEEEEECSSCHHHHHHHHHHTCSEEEECGGGCSCHHHHHHHHHTTTSEEEEEECTTCCSGGGT
T ss_pred cCHHHHHHHHHhCCCCeEEEEEeeCCHHHHHHHHHHcCCCEEEEccccchhHHHHHHHHHHcCCeEEEEecCCCCHHHHH
Confidence 3446777888777 778777754 34443 77888888875421100
Q ss_pred --------------------CCCCcchHHHHHHHHHHcC---CCceEEEecCCCCHHHHHHHHHhCcCEEEecHHHH
Q 017781 256 --------------------LDYVPATIMALEEVVKATQ---GRIPVFLDGGVRRGTDVFKALALGASGIFIGRPVV 309 (366)
Q Consensus 256 --------------------~~~~~~~~~~l~~i~~~~~---~~i~vi~~GGI~~~~dv~kalalGAd~V~igr~~l 309 (366)
..+.+.+++-+.++++... .+++|.++|||. .+.+.++..+|||.+.+||++.
T Consensus 152 ~~l~~vD~VlvMsV~PGfgGQ~fi~~~l~KI~~lr~~~~~~~~~~~I~VDGGI~-~~ti~~~~~aGAD~~V~GSaIf 227 (246)
T 3inp_A 152 YVESNIDRVLIMSVNPGFGGQKFIPAMLDKAKEISKWISSTDRDILLEIDGGVN-PYNIAEIAVCGVNAFVAGSAIF 227 (246)
T ss_dssp TTGGGCSEEEEECSCTTC--CCCCTTHHHHHHHHHHHHHHHTSCCEEEEESSCC-TTTHHHHHTTTCCEEEESHHHH
T ss_pred HHHhcCCEEEEeeecCCCCCcccchHHHHHHHHHHHHHHhcCCCeeEEEECCcC-HHHHHHHHHcCCCEEEEehHHh
Confidence 0112445666777766542 368999999998 6788899999999999999765
|
| >3tha_A Tryptophan synthase alpha chain; structural genomics, center for structural genomics of infec diseases, csgid, lyase; 2.37A {Campylobacter jejuni} | Back alignment and structure |
|---|
Probab=98.10 E-value=1e-05 Score=74.73 Aligned_cols=52 Identities=21% Similarity=0.396 Sum_probs=40.4
Q ss_pred HHHHHHHHHcCCCceEEEecCCCCHHHHHHHHHhCcCEEEecHHHHHHhhhcCHH
Q 017781 264 MALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFIGRPVVYSLAAEGEK 318 (366)
Q Consensus 264 ~~l~~i~~~~~~~i~vi~~GGI~~~~dv~kalalGAd~V~igr~~l~~l~~~G~~ 318 (366)
+.+.++++.. ++||++.+||++++++.++.. +||+|.+|++++..+...+.+
T Consensus 189 ~~v~~vr~~~--~~Pv~vGfGIst~e~a~~~~~-~ADGVIVGSAiVk~i~~~~~~ 240 (252)
T 3tha_A 189 DKVKEIRSFT--NLPIFVGFGIQNNQDVKRMRK-VADGVIVGTSIVKCFKQGNLD 240 (252)
T ss_dssp HHHHHHHTTC--CSCEEEESSCCSHHHHHHHTT-TSSEEEECHHHHHHTTSSCHH
T ss_pred HHHHHHHHhc--CCcEEEEcCcCCHHHHHHHHh-cCCEEEECHHHHHHHHhcCHH
Confidence 3455555544 799999999999999987765 699999999999876544443
|
| >1rpx_A Protein (ribulose-phosphate 3-epimerase); chloroplast, calvin cycle, oxidative pentose PH pathway; 2.30A {Solanum tuberosum} SCOP: c.1.2.2 | Back alignment and structure |
|---|
Probab=98.08 E-value=0.00018 Score=65.02 Aligned_cols=165 Identities=14% Similarity=0.131 Sum_probs=97.8
Q ss_pred hHHHHHHHHHcCCcee-cCC----C---CCCCHH---HHhccCCCceEEEeeecCCHHHHHHHHHHHHHcCCCEEEEecC
Q 017781 90 EYATARAASAAGTIMT-LSS----W---STSSVE---EVASTGPGIRFFQLYVYKDRNVVAQLVRRAERAGFKAIALTVD 158 (366)
Q Consensus 90 e~~la~aa~~~G~~~~-vs~----~---~~~~~e---~i~~~~~~~~~~Qly~~~d~~~~~~~l~ra~~~G~~ai~vtvd 158 (366)
-...++++.+.|+-++ +.- + .....+ ++++..+.+..+-+|.. |++ +.++.+.++|++.+.++.+
T Consensus 25 ~~~~i~~~~~~G~d~i~l~~~dg~f~~~~~~~~~~i~~l~~~~~~~~~v~l~vn-d~~---~~v~~~~~~Gad~v~vh~~ 100 (230)
T 1rpx_A 25 LGEQVKAIEQAGCDWIHVDVMDGRFVPNITIGPLVVDSLRPITDLPLDVHLMIV-EPD---QRVPDFIKAGADIVSVHCE 100 (230)
T ss_dssp HHHHHHHHHHTTCCCEEEEEEBSSSSSCBCCCHHHHHHHGGGCCSCEEEEEESS-SHH---HHHHHHHHTTCSEEEEECS
T ss_pred HHHHHHHHHHCCCCEEEEeeccCCcccccccCHHHHHHHHhccCCcEEEEEEec-CHH---HHHHHHHHcCCCEEEEEec
Confidence 3567778888886543 320 1 122233 44444334566777754 433 5677788899999877644
Q ss_pred --CCCCcchhHHHhhhcCCCCccccccccccccCCCccccchhhHHHhhhccCCCCCHHHHHHHHHhcCCCEEEEec-cC
Q 017781 159 --TPRLGRREADIKNRFTLPPFLTLKNFQGLDLGKMDEANDSGLAAYVAGQIDRSLSWKDVKWLQTITKLPILVKGV-LT 235 (366)
Q Consensus 159 --~p~~g~r~~d~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~i~~lr~~~~~pv~vK~v-~~ 235 (366)
.+ +...+.++.+++. ++.+++-.. .+
T Consensus 101 ~~~~--------------------------------------------------~~~~~~~~~~~~~-g~~ig~~~~p~t 129 (230)
T 1rpx_A 101 QSST--------------------------------------------------IHLHRTINQIKSL-GAKAGVVLNPGT 129 (230)
T ss_dssp TTTC--------------------------------------------------SCHHHHHHHHHHT-TSEEEEEECTTC
T ss_pred Cccc--------------------------------------------------hhHHHHHHHHHHc-CCcEEEEeCCCC
Confidence 21 0112345556553 444333322 23
Q ss_pred HHH----HHcCCcEEEEcCC--CccCCCCCcchHHHHHHHHHHcC---CCceEEEecCCCCHHHHHHHHHhCcCEEEecH
Q 017781 236 AED----VQAGAAGIIVSNH--GARQLDYVPATIMALEEVVKATQ---GRIPVFLDGGVRRGTDVFKALALGASGIFIGR 306 (366)
Q Consensus 236 ~~d----~~aGad~I~vs~~--gg~~~~~~~~~~~~l~~i~~~~~---~~i~vi~~GGI~~~~dv~kalalGAd~V~igr 306 (366)
..+ ...++|+|.+... |+......+..++.+.++++.++ .++|++++|||+ .+.+.+++++|||+|.+|+
T Consensus 130 ~~e~~~~~~~~~d~vl~~~~~pg~~g~~~~~~~~~~i~~l~~~~~~~~~~~pi~v~GGI~-~~n~~~~~~aGad~vvvgS 208 (230)
T 1rpx_A 130 PLTAIEYVLDAVDLVLIMSVNPGFGGQSFIESQVKKISDLRKICAERGLNPWIEVDGGVG-PKNAYKVIEAGANALVAGS 208 (230)
T ss_dssp CGGGGTTTTTTCSEEEEESSCTTCSSCCCCTTHHHHHHHHHHHHHHHTCCCEEEEESSCC-TTTHHHHHHHTCCEEEESH
T ss_pred CHHHHHHHHhhCCEEEEEEEcCCCCCccccHHHHHHHHHHHHHHHhcCCCceEEEECCCC-HHHHHHHHHcCCCEEEECh
Confidence 223 4568998854432 22111223344556666665542 268999999998 7899899999999999999
Q ss_pred HHHH
Q 017781 307 PVVY 310 (366)
Q Consensus 307 ~~l~ 310 (366)
++..
T Consensus 209 aI~~ 212 (230)
T 1rpx_A 209 AVFG 212 (230)
T ss_dssp HHHT
T ss_pred hhhC
Confidence 9864
|
| >1xi3_A Thiamine phosphate pyrophosphorylase; structural genomics, southeast collaboratory for structural genomics, hyperthermophIle; 1.70A {Pyrococcus furiosus} SCOP: c.1.3.1 | Back alignment and structure |
|---|
Probab=98.08 E-value=7.5e-05 Score=66.43 Aligned_cols=74 Identities=22% Similarity=0.289 Sum_probs=57.0
Q ss_pred cCHHH----HHcCCcEEEEcCC--CccCCCCCcchHHHHHHHHHHcCCCceEEEecCCCCHHHHHHHHHhCcCEEEecHH
Q 017781 234 LTAED----VQAGAAGIIVSNH--GARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFIGRP 307 (366)
Q Consensus 234 ~~~~d----~~aGad~I~vs~~--gg~~~~~~~~~~~~l~~i~~~~~~~i~vi~~GGI~~~~dv~kalalGAd~V~igr~ 307 (366)
.+.++ .+.|+|+|.+++. ++......+..++.+.++++.. ++||++.|||. ++++.+++.+||++|.+|+.
T Consensus 116 ~t~~e~~~~~~~g~d~i~~~~~~~~~~~~~~~~~~~~~l~~l~~~~--~~pvia~GGI~-~~nv~~~~~~Ga~gv~vgs~ 192 (215)
T 1xi3_A 116 YSLEEALEAEKKGADYLGAGSVFPTKTKEDARVIGLEGLRKIVESV--KIPVVAIGGIN-KDNAREVLKTGVDGIAVISA 192 (215)
T ss_dssp SSHHHHHHHHHHTCSEEEEECSSCC----CCCCCHHHHHHHHHHHC--SSCEEEESSCC-TTTHHHHHTTTCSEEEESHH
T ss_pred CCHHHHHHHHhcCCCEEEEcCCccCCCCCCCCCcCHHHHHHHHHhC--CCCEEEECCcC-HHHHHHHHHcCCCEEEEhHH
Confidence 45555 6789999998651 2111112345788888888776 79999999999 99999999999999999999
Q ss_pred HHH
Q 017781 308 VVY 310 (366)
Q Consensus 308 ~l~ 310 (366)
++.
T Consensus 193 i~~ 195 (215)
T 1xi3_A 193 VMG 195 (215)
T ss_dssp HHT
T ss_pred HhC
Confidence 864
|
| >4gbu_A NADPH dehydrogenase 1; alpha/beta barrel, enenone reductase, alkene reductase, NADP oxidoreductase, carvone, enenatioselectivity; HET: 0WV 1PE FMN; 1.18A {Saccharomyces pastorianus} PDB: 4ge8_A* 1oya_A* 1oyb_A* 1oyc_A* 3tx9_A* 3rnd_A* 1k02_A* 1k03_A* 1bwk_A* 1bwl_A* | Back alignment and structure |
|---|
Probab=98.07 E-value=8.3e-05 Score=73.22 Aligned_cols=41 Identities=20% Similarity=0.133 Sum_probs=34.8
Q ss_pred HHHHcCCCceEEEecCCCCHHHHHHHHHh-CcCEEEecHHHHHH
Q 017781 269 VVKATQGRIPVFLDGGVRRGTDVFKALAL-GASGIFIGRPVVYS 311 (366)
Q Consensus 269 i~~~~~~~i~vi~~GGI~~~~dv~kalal-GAd~V~igr~~l~~ 311 (366)
+++.+ ++|||+.|||.+..++.+.+.. +||+|.+||+||..
T Consensus 313 ir~~~--~~pvi~~G~~~~~~~~~~~~~~~~aDlV~~gR~~iad 354 (400)
T 4gbu_A 313 VYSIW--KGPVIRAGNFALHPEVVREEVKDKRTLIGYGRFFISN 354 (400)
T ss_dssp HHHHC--CSCEEEESSCTTCHHHHHHHTTSTTEEEECCHHHHHC
T ss_pred HHHHh--CCCEEEeCCCCChHHHHHHHHcCCCeEhHHHHHHHHC
Confidence 45555 7899999999999999888876 59999999999863
|
| >1vcv_A Probable deoxyribose-phosphate aldolase; DERA, hyperthermophIle, archaea, lyase; 2.00A {Pyrobaculum aerophilum} SCOP: c.1.10.1 | Back alignment and structure |
|---|
Probab=98.05 E-value=0.00025 Score=64.33 Aligned_cols=92 Identities=24% Similarity=0.185 Sum_probs=63.0
Q ss_pred CHHHHHHHHHhcCCCEEEEec-----cCHHH--------HHcCCcEEEEcCCCcc------CCCCCcchHH---HHHHHH
Q 017781 213 SWKDVKWLQTITKLPILVKGV-----LTAED--------VQAGAAGIIVSNHGAR------QLDYVPATIM---ALEEVV 270 (366)
Q Consensus 213 ~~~~i~~lr~~~~~pv~vK~v-----~~~~d--------~~aGad~I~vs~~gg~------~~~~~~~~~~---~l~~i~ 270 (366)
..++|+.+++..+. ..+|.+ ++.++ .++|+|+|..|...+. ..+.+..+.+ .+.+..
T Consensus 100 v~~ei~~v~~a~~~-~~lKvIlEt~~Lt~eei~~a~~ia~eaGADfVKTSTGf~~~~~~~~~~~~~gAt~~dv~lm~~~i 178 (226)
T 1vcv_A 100 VRRDLISVVGAAGG-RVVKVITEEPYLRDEERYTLYDIIAEAGAHFIKSSTGFAEEAYAARQGNPVHSTPERAAAIARYI 178 (226)
T ss_dssp HHHHHHHHHHHTTT-SEEEEECCGGGCCHHHHHHHHHHHHHHTCSEEECCCSCCCHHHHHHTTCCSSCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcC-CCceEEEeccCCCHHHHHHHHHHHHHcCCCEEEeCCCCCccccccccCCCCCCCHHHHHHHHHHH
Confidence 45678888887743 367744 46554 8999999998753220 0112223444 444443
Q ss_pred HHcCCCceEEEecCCCCHHHHHHHHHh---CcC----EEEec
Q 017781 271 KATQGRIPVFLDGGVRRGTDVFKALAL---GAS----GIFIG 305 (366)
Q Consensus 271 ~~~~~~i~vi~~GGI~~~~dv~kalal---GAd----~V~ig 305 (366)
+.++++++|-++||||+.+|+.+.+.+ ||+ -++..
T Consensus 179 ~~~g~~v~vKaaGGirt~~~al~~i~a~~~Ga~~~~fRiGtS 220 (226)
T 1vcv_A 179 KEKGYRLGVKMAGGIRTREQAKAIVDAIGWGEDPARVRLGTS 220 (226)
T ss_dssp HHHTCCCEEEEESSCCSHHHHHHHHHHHCSCSCTTTEEEEES
T ss_pred HHhCCCceEEEeCCCCCHHHHHHHHHHHHCCCCcCCceEecC
Confidence 447778999999999999999999999 999 66554
|
| >1jvn_A Glutamine, bifunctional histidine biosynthesis protein hishf; substrate channeling, amidotransferase, TIM-barrel AS A SUBS tunnel; HET: 143; 2.10A {Saccharomyces cerevisiae} SCOP: c.1.2.1 c.23.16.1 PDB: 1ox4_B* 1ox5_A* 1ox6_A 1ox4_A | Back alignment and structure |
|---|
Probab=98.04 E-value=9.2e-06 Score=83.41 Aligned_cols=70 Identities=17% Similarity=0.125 Sum_probs=58.1
Q ss_pred HHcCCcEEEEcCCCccCCCCCcchHHHHHHHHHHcCCCceEEEecCCCCHHHHHHHHH-hCcCEEEecHHHHHH
Q 017781 239 VQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALA-LGASGIFIGRPVVYS 311 (366)
Q Consensus 239 ~~aGad~I~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~i~vi~~GGI~~~~dv~kala-lGAd~V~igr~~l~~ 311 (366)
.++|++.|.+.+...-+...| +.++.+.++++.+ ++|||++|||++.+|+.+++. +||++|++|++|+..
T Consensus 462 ~~~Ga~~il~t~~~~dG~~~G-~d~~li~~l~~~~--~iPVIasGGi~s~~d~~~~~~~~G~~gvivg~a~~~~ 532 (555)
T 1jvn_A 462 EALGAGEILLNCIDKDGSNSG-YDLELIEHVKDAV--KIPVIASSGAGVPEHFEEAFLKTRADACLGAGMFHRG 532 (555)
T ss_dssp HHTTCCEEEECCGGGTTTCSC-CCHHHHHHHHHHC--SSCEEECSCCCSHHHHHHHHHHSCCSEEEESHHHHTT
T ss_pred HHcCCCEEEEeCCCCCCCCCC-CCHHHHHHHHHhC--CccEEEECCCCCHHHHHHHHHhcCChHHHHHHHHHcC
Confidence 899999999865321112234 3799999999988 899999999999999999998 899999999998653
|
| >2yw3_A 4-hydroxy-2-oxoglutarate aldolase/2-deydro-3- deoxyphosphogluconate aldolase; structural genomics, NPPSFA; 1.67A {Thermus thermophilus} PDB: 2yw4_A | Back alignment and structure |
|---|
Probab=98.03 E-value=2.9e-05 Score=69.66 Aligned_cols=90 Identities=18% Similarity=0.155 Sum_probs=66.9
Q ss_pred CCCHHHHHHHHHhcCCCEEEEeccCHHH----HHcCCcEEEEcCCCccCCCCCcchHHHHHHHHHHcCCCceEEEecCCC
Q 017781 211 SLSWKDVKWLQTITKLPILVKGVLTAED----VQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVR 286 (366)
Q Consensus 211 ~~~~~~i~~lr~~~~~pv~vK~v~~~~d----~~aGad~I~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~i~vi~~GGI~ 286 (366)
..+.+.++..++ .+.|++. ++.|+++ .++|+|+|.+.. . ..-+ ..+.|+.++..++ ++|+++.|||.
T Consensus 91 ~~d~~v~~~~~~-~g~~~i~-G~~t~~e~~~A~~~Gad~v~~fp--a-~~~g---G~~~lk~l~~~~~-~ipvvaiGGI~ 161 (207)
T 2yw3_A 91 GLLEEVAALAQA-RGVPYLP-GVLTPTEVERALALGLSALKFFP--A-EPFQ---GVRVLRAYAEVFP-EVRFLPTGGIK 161 (207)
T ss_dssp SCCHHHHHHHHH-HTCCEEE-EECSHHHHHHHHHTTCCEEEETT--T-TTTT---HHHHHHHHHHHCT-TCEEEEBSSCC
T ss_pred CCCHHHHHHHHH-hCCCEEe-cCCCHHHHHHHHHCCCCEEEEec--C-cccc---CHHHHHHHHhhCC-CCcEEEeCCCC
Confidence 345555566655 6888777 4778877 889999999843 1 1111 2456777776654 79999999996
Q ss_pred CHHHHHHHHHhCcCEEEecHHHHH
Q 017781 287 RGTDVFKALALGASGIFIGRPVVY 310 (366)
Q Consensus 287 ~~~dv~kalalGAd~V~igr~~l~ 310 (366)
.+++...+++||++|.+|+.++.
T Consensus 162 -~~n~~~~l~aGa~~vavgSai~~ 184 (207)
T 2yw3_A 162 -EEHLPHYAALPNLLAVGGSWLLQ 184 (207)
T ss_dssp -GGGHHHHHTCSSBSCEEESGGGS
T ss_pred -HHHHHHHHhCCCcEEEEehhhhC
Confidence 79999999999999999998753
|
| >1pii_A N-(5'phosphoribosyl)anthranilate isomerase; bifunctional(isomerase and synthase); 2.00A {Escherichia coli} SCOP: c.1.2.4 c.1.2.4 PDB: 1jcm_P* 2kzh_A | Back alignment and structure |
|---|
Probab=98.02 E-value=5.8e-05 Score=75.28 Aligned_cols=116 Identities=13% Similarity=0.191 Sum_probs=81.4
Q ss_pred HHHHHHhcCCCEEEEeccCHHH----HHcCCcEEEEcCCCccCCCCCcchHHHHHHHHHHcCCCceEEEecCCCCHHHHH
Q 017781 217 VKWLQTITKLPILVKGVLTAED----VQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVF 292 (366)
Q Consensus 217 i~~lr~~~~~pv~vK~v~~~~d----~~aGad~I~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~i~vi~~GGI~~~~dv~ 292 (366)
++..++ .+.-+ +-.+.+.++ .++|+|.|-+.|++-+. -...++...++.+.++.++++|+.|||.+++|+.
T Consensus 150 ~~~a~~-lgm~~-LvEvh~~eE~~~A~~lga~iIGinnr~L~t---~~~dl~~~~~L~~~ip~~~~vIaEsGI~t~edv~ 224 (452)
T 1pii_A 150 AAVAHS-LEMGV-LTEVSNEEEQERAIALGAKVVGINNRDLRD---LSIDLNRTRELAPKLGHNVTVISESGINTYAQVR 224 (452)
T ss_dssp HHHHHH-TTCEE-EEEECSHHHHHHHHHTTCSEEEEESEETTT---TEECTHHHHHHHHHHCTTSEEEEESCCCCHHHHH
T ss_pred HHHHHH-cCCeE-EEEeCCHHHHHHHHHCCCCEEEEeCCCCCC---CCCCHHHHHHHHHhCCCCCeEEEECCCCCHHHHH
Confidence 444444 35543 345677777 88999999888865322 2345666667777777789999999999999999
Q ss_pred HHHHhCcCEEEecHHHHHHhhhcCHHHHHHHHHHHHHHHHHHHHHcCCCChhhhc
Q 017781 293 KALALGASGIFIGRPVVYSLAAEGEKGVRRVLEMLREEFELAMALSGCRSLKEIT 347 (366)
Q Consensus 293 kalalGAd~V~igr~~l~~l~~~G~~gv~~~~~~l~~el~~~m~~~G~~~l~el~ 347 (366)
++..+ ||+|.||+.++.+- -+...++.|.. .....||.++.++..
T Consensus 225 ~~~~~-a~avLVGealmr~~------d~~~~~~~l~~---~~~KICGit~~eda~ 269 (452)
T 1pii_A 225 ELSHF-ANGFLIGSALMAHD------DLHAAVRRVLL---GENKVCGLTRGQDAK 269 (452)
T ss_dssp HHTTT-CSEEEECHHHHTCS------CHHHHHHHHHH---CSCEECCCCSHHHHH
T ss_pred HHHHh-CCEEEEcHHHcCCc------CHHHHHHHHHH---HhccccCCCcHHHHH
Confidence 99999 99999999998641 12223333321 234678988887775
|
| >4a29_A Engineered retro-aldol enzyme RA95.0; de novo protein, engineered enzyme, retro-aldolase, directed evolution; HET: 3NK MLT; 1.10A {Synthetic construct} PDB: 4a2s_A* 4a2r_A* 3tc7_A 3tc6_A 3nl8_A* 3nxf_A* 3o6y_X 3ud6_A* 1igs_A 1juk_A 1jul_A* 3hoj_A 1a53_A* 1lbf_A* 1lbl_A* 3nyz_A 3nz1_A* 3uy7_A 3uxd_A* 3uxa_A* ... | Back alignment and structure |
|---|
Probab=98.01 E-value=5.8e-05 Score=69.38 Aligned_cols=50 Identities=8% Similarity=0.174 Sum_probs=43.2
Q ss_pred hHHHHHHHHHHcCCCceEEEecCCCCHHHHHHHHHhCcCEEEecHHHHHH
Q 017781 262 TIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFIGRPVVYS 311 (366)
Q Consensus 262 ~~~~l~~i~~~~~~~i~vi~~GGI~~~~dv~kalalGAd~V~igr~~l~~ 311 (366)
.++...++...++.++.+|+.+||++++|+.++...|+|+|.||..||.+
T Consensus 190 dl~~t~~L~~~ip~~~~~VsESGI~t~~dv~~l~~~G~~a~LVGealmr~ 239 (258)
T 4a29_A 190 NKENQRKLISMIPSNVVKVAKLGISERNEIEELRKLGVNAFLISSSLMRN 239 (258)
T ss_dssp CHHHHHHHHTTSCTTSEEEEEESSCCHHHHHHHHHTTCCEEEECHHHHHC
T ss_pred CHHHHHHHHhhCCCCCEEEEcCCCCCHHHHHHHHHCCCCEEEECHHHhCC
Confidence 45555666667777889999999999999999999999999999999974
|
| >2tps_A Protein (thiamin phosphate synthase); thiamin biosynthesis, TIM barrel; HET: TPS; 1.25A {Bacillus subtilis} SCOP: c.1.3.1 PDB: 1g4t_A* 3o15_A* 1g6c_A* 1g4e_A* 1g69_A* 3o16_A 1g4s_A* 1g4p_A* 1g67_A* | Back alignment and structure |
|---|
Probab=98.00 E-value=2.9e-05 Score=69.92 Aligned_cols=91 Identities=15% Similarity=0.165 Sum_probs=63.9
Q ss_pred HHHHHHhcCCCEEEEe-ccCHHH----HHcCCcEEEEcC--CCccCCC-CCcchHHHHHHHHHHcCCCceEEEecCCCCH
Q 017781 217 VKWLQTITKLPILVKG-VLTAED----VQAGAAGIIVSN--HGARQLD-YVPATIMALEEVVKATQGRIPVFLDGGVRRG 288 (366)
Q Consensus 217 i~~lr~~~~~pv~vK~-v~~~~d----~~aGad~I~vs~--~gg~~~~-~~~~~~~~l~~i~~~~~~~i~vi~~GGI~~~ 288 (366)
+..+++..+. +++.. +.+.++ .+.|+|+|.++. .++.... ..+..++.+.++++.++ ++||++.|||. +
T Consensus 107 ~~~~~~~~g~-~~~~~s~~t~~e~~~a~~~g~d~v~~~~v~~t~~~~~~~~~~~~~~l~~~~~~~~-~~pvia~GGI~-~ 183 (227)
T 2tps_A 107 AKEVRAAIGD-MILGVSAHTMSEVKQAEEDGADYVGLGPIYPTETKKDTRAVQGVSLIEAVRRQGI-SIPIVGIGGIT-I 183 (227)
T ss_dssp HHHHHHHHTT-SEEEEEECSHHHHHHHHHHTCSEEEECCSSCCCSSSSCCCCCTTHHHHHHHHTTC-CCCEEEESSCC-T
T ss_pred HHHHHHhcCC-cEEEEecCCHHHHHHHHhCCCCEEEECCCcCCCCCCCCCCccCHHHHHHHHHhCC-CCCEEEEcCCC-H
Confidence 4555555554 34443 256655 778999999753 1111111 23346778888877662 39999999999 9
Q ss_pred HHHHHHHHhCcCEEEecHHHHH
Q 017781 289 TDVFKALALGASGIFIGRPVVY 310 (366)
Q Consensus 289 ~dv~kalalGAd~V~igr~~l~ 310 (366)
+++.+++.+||++|.+|+.++.
T Consensus 184 ~nv~~~~~~Ga~gv~vgs~i~~ 205 (227)
T 2tps_A 184 DNAAPVIQAGADGVSMISAISQ 205 (227)
T ss_dssp TTSHHHHHTTCSEEEESHHHHT
T ss_pred HHHHHHHHcCCCEEEEhHHhhc
Confidence 9999999999999999999864
|
| >1i4n_A Indole-3-glycerol phosphate synthase; thermostable TIM-barrel protein, salt bridges, electrostatic interactions, lyase; 2.50A {Thermotoga maritima} SCOP: c.1.2.4 PDB: 1j5t_A | Back alignment and structure |
|---|
Probab=98.00 E-value=0.0001 Score=68.07 Aligned_cols=89 Identities=11% Similarity=0.132 Sum_probs=65.2
Q ss_pred HHHHHHhcCCCEEEEeccCHHH----HHc-CCcEEEEcCCCccCCCCCcchHHHHHHHHHHcCCCceEEEecCCCCHHHH
Q 017781 217 VKWLQTITKLPILVKGVLTAED----VQA-GAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDV 291 (366)
Q Consensus 217 i~~lr~~~~~pv~vK~v~~~~d----~~a-Gad~I~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~i~vi~~GGI~~~~dv 291 (366)
++..++ .+.-++ -.+.+.++ .++ |+|.|-+.|.+-+. -...++...++.+.++.++++|+.|||.+++|+
T Consensus 143 ~~~a~~-lGl~~l-vEv~~~eE~~~A~~l~g~~iIGinnr~l~t---~~~d~~~~~~l~~~ip~~~~vIaEsGI~t~edv 217 (251)
T 1i4n_A 143 YEAAEE-LGMDSL-VEVHSREDLEKVFSVIRPKIIGINTRDLDT---FEIKKNVLWELLPLVPDDTVVVAESGIKDPREL 217 (251)
T ss_dssp HHHHHT-TTCEEE-EEECSHHHHHHHHTTCCCSEEEEECBCTTT---CCBCTTHHHHHGGGSCTTSEEEEESCCCCGGGH
T ss_pred HHHHHH-cCCeEE-EEeCCHHHHHHHHhcCCCCEEEEeCccccc---CCCCHHHHHHHHHhCCCCCEEEEeCCCCCHHHH
Confidence 344444 355433 35667776 788 99999888865322 223345555666666667899999999999999
Q ss_pred HHHHHhCcCEEEecHHHHHH
Q 017781 292 FKALALGASGIFIGRPVVYS 311 (366)
Q Consensus 292 ~kalalGAd~V~igr~~l~~ 311 (366)
.++..+ ||+|.||+.++.+
T Consensus 218 ~~~~~~-a~avLVG~aimr~ 236 (251)
T 1i4n_A 218 KDLRGK-VNAVLVGTSIMKA 236 (251)
T ss_dssp HHHTTT-CSEEEECHHHHHC
T ss_pred HHHHHh-CCEEEEcHHHcCC
Confidence 999999 9999999999874
|
| >2fli_A Ribulose-phosphate 3-epimerase; (beta/alpha)8-barrel, D- xylitol 5-phosphate, isomerase; HET: DX5; 1.80A {Streptococcus pyogenes} SCOP: c.1.2.2 | Back alignment and structure |
|---|
Probab=98.00 E-value=0.00013 Score=65.38 Aligned_cols=92 Identities=13% Similarity=0.181 Sum_probs=58.0
Q ss_pred HHHHHHHhcCCCEEEEec--cCHHH----HHcCCcEEEEcC-C-CccCCCCCcchHHHHHHHHHHcC---CCceEEEecC
Q 017781 216 DVKWLQTITKLPILVKGV--LTAED----VQAGAAGIIVSN-H-GARQLDYVPATIMALEEVVKATQ---GRIPVFLDGG 284 (366)
Q Consensus 216 ~i~~lr~~~~~pv~vK~v--~~~~d----~~aGad~I~vs~-~-gg~~~~~~~~~~~~l~~i~~~~~---~~i~vi~~GG 284 (366)
.++++++. +.++ .+.+ .+..+ ...++|.|.+.. + |+......+..++.+.++++... .++|++++||
T Consensus 101 ~~~~~~~~-g~~i-~~~~~~~t~~e~~~~~~~~~d~vl~~~~~~g~~g~~~~~~~~~~i~~~~~~~~~~~~~~~i~v~GG 178 (220)
T 2fli_A 101 ALQKIKAA-GMKA-GVVINPGTPATALEPLLDLVDQVLIMTVNPGFGGQAFIPECLEKVATVAKWRDEKGLSFDIEVDGG 178 (220)
T ss_dssp HHHHHHHT-TSEE-EEEECTTSCGGGGGGGTTTCSEEEEESSCTTCSSCCCCGGGHHHHHHHHHHHHHTTCCCEEEEESS
T ss_pred HHHHHHHc-CCcE-EEEEcCCCCHHHHHHHHhhCCEEEEEEECCCCcccccCHHHHHHHHHHHHHHHhcCCCceEEEECc
Confidence 45555553 4443 3333 23333 456789886532 2 22112223444555666655442 2689999999
Q ss_pred CCCHHHHHHHHHhCcCEEEecHHHHH
Q 017781 285 VRRGTDVFKALALGASGIFIGRPVVY 310 (366)
Q Consensus 285 I~~~~dv~kalalGAd~V~igr~~l~ 310 (366)
|+ .+++.+++.+|||+|.+||++..
T Consensus 179 I~-~~~~~~~~~~Gad~vvvGsai~~ 203 (220)
T 2fli_A 179 VD-NKTIRACYEAGANVFVAGSYLFK 203 (220)
T ss_dssp CC-TTTHHHHHHHTCCEEEESHHHHT
T ss_pred CC-HHHHHHHHHcCCCEEEEChHHhC
Confidence 99 89999999999999999999864
|
| >3tdn_A FLR symmetric alpha-beta TIM barrel; symmetric superfold, de novo protein; 1.40A {Synthetic construct} PDB: 3og3_A 3tdm_A | Back alignment and structure |
|---|
Probab=97.99 E-value=1.1e-05 Score=73.90 Aligned_cols=69 Identities=19% Similarity=0.241 Sum_probs=54.8
Q ss_pred HHcCCcEEEEcCCCccCCCCCcchHHHHHHHHHHcCCCceEEEecCCCCHHHHHHHHHhCcCEEEecHHHHH
Q 017781 239 VQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFIGRPVVY 310 (366)
Q Consensus 239 ~~aGad~I~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~i~vi~~GGI~~~~dv~kalalGAd~V~igr~~l~ 310 (366)
.++|+|.|.++...+.. ......++.+.++++.+ ++||+++|||++.+|+.++++.|||+|++|++++.
T Consensus 45 ~~~G~~~i~v~d~~~~~-~~~~~~~~~i~~i~~~~--~ipvi~~Ggi~~~~~~~~~l~~Gad~V~ig~~~l~ 113 (247)
T 3tdn_A 45 EKRGAGEILLTSIDRDG-TKSGYDTEMIRFVRPLT--TLPIIASGGAGKMEHFLEAFLRGADKVSINTAAVE 113 (247)
T ss_dssp HHTTCSEEEEEETTTTT-CSSCCCHHHHHHHGGGC--CSCEEEESCCCSHHHHHHHHHTTCSEECCSHHHHH
T ss_pred HHcCCCEEEEEecCccc-CCCcccHHHHHHHHHhC--CCCEEEeCCCCCHHHHHHHHHcCCCeeehhhHHhh
Confidence 56799999886532111 11234678888888877 89999999999999999999999999999998763
|
| >1n7k_A Deoxyribose-phosphate aldolase; A.pernix, tetramer, alpha-beta TIM barrel, riken S genomics/proteomics initiative, RSGI, structural genomics,; 2.00A {Aeropyrum pernix} SCOP: c.1.10.1 | Back alignment and structure |
|---|
Probab=97.97 E-value=8.3e-05 Score=67.85 Aligned_cols=84 Identities=21% Similarity=0.208 Sum_probs=57.9
Q ss_pred HHHHHHHHHh---cCCCEEEEec-----cCHHH--------HHcCCcEEEEcCCCccCCCC-CcchHHHHHH--HHHHcC
Q 017781 214 WKDVKWLQTI---TKLPILVKGV-----LTAED--------VQAGAAGIIVSNHGARQLDY-VPATIMALEE--VVKATQ 274 (366)
Q Consensus 214 ~~~i~~lr~~---~~~pv~vK~v-----~~~~d--------~~aGad~I~vs~~gg~~~~~-~~~~~~~l~~--i~~~~~ 274 (366)
.+++..+++. |+.| +|.+ ++.++ .++|||+|..|...+ . +..+.+.+.. .++.++
T Consensus 119 ~~ei~~v~~a~~~~g~~--lKvIlEt~~L~~e~i~~a~ria~eaGADfVKTsTG~~----~~~gAt~~dv~l~~m~~~v~ 192 (234)
T 1n7k_A 119 YREVSGIVKLAKSYGAV--VKVILEAPLWDDKTLSLLVDSSRRAGADIVKTSTGVY----TKGGDPVTVFRLASLAKPLG 192 (234)
T ss_dssp HHHHHHHHHHHHHTTCE--EEEECCGGGSCHHHHHHHHHHHHHTTCSEEESCCSSS----CCCCSHHHHHHHHHHHGGGT
T ss_pred HHHHHHHHHHHhhcCCe--EEEEEeccCCCHHHHHHHHHHHHHhCCCEEEeCCCCC----CCCCCCHHHHHHHHHHHHHC
Confidence 3456666654 3454 4755 35444 999999999875211 1 2245555555 666664
Q ss_pred CCceEEEecCCCCHHHHHHHHHhCcCEEEec
Q 017781 275 GRIPVFLDGGVRRGTDVFKALALGASGIFIG 305 (366)
Q Consensus 275 ~~i~vi~~GGI~~~~dv~kalalGAd~V~ig 305 (366)
+||-++||||+.+|+++.+.+||+-++..
T Consensus 193 --v~VKaaGGirt~~~al~~i~aGa~RiG~S 221 (234)
T 1n7k_A 193 --MGVKASGGIRSGIDAVLAVGAGADIIGTS 221 (234)
T ss_dssp --CEEEEESSCCSHHHHHHHHHTTCSEEEET
T ss_pred --CCEEEecCCCCHHHHHHHHHcCccccchH
Confidence 99999999999999999999999944443
|
| >1w8s_A FBP aldolase, fructose-bisphosphate aldolase class I; TIM barrel, glycolytic, archaeal, catalytic mechanism, reaction intermediate, lyase; HET: FBP; 1.85A {Thermoproteus tenax} SCOP: c.1.10.1 PDB: 1w8r_A* 2yce_A* 1ojx_A 1ok4_A 1ok6_A | Back alignment and structure |
|---|
Probab=97.96 E-value=0.00016 Score=67.16 Aligned_cols=63 Identities=29% Similarity=0.506 Sum_probs=51.3
Q ss_pred HHcCCcEEEEcCCCccCCCCCcchHHHHHHHHHHcCCCceEEEecCCC--CHHHHHHHH----HhCcCEEEecHHHHHH
Q 017781 239 VQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVR--RGTDVFKAL----ALGASGIFIGRPVVYS 311 (366)
Q Consensus 239 ~~aGad~I~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~i~vi~~GGI~--~~~dv~kal----alGAd~V~igr~~l~~ 311 (366)
.++|+|+|.++-. ...+.+.++++.+ +.+||+++|||+ +.+|+.+.+ ..||+++.+||.++.+
T Consensus 169 ~~~GAD~vkt~~~---------~~~e~~~~~~~~~-~~~pV~asGGi~~~~~~~~l~~i~~~~~aGA~GvsvgraI~~~ 237 (263)
T 1w8s_A 169 LELGADAMKIKYT---------GDPKTFSWAVKVA-GKVPVLMSGGPKTKTEEDFLKQVEGVLEAGALGIAVGRNVWQR 237 (263)
T ss_dssp HHHTCSEEEEECC---------SSHHHHHHHHHHT-TTSCEEEECCSCCSSHHHHHHHHHHHHHTTCCEEEESHHHHTS
T ss_pred HHcCCCEEEEcCC---------CCHHHHHHHHHhC-CCCeEEEEeCCCCCCHHHHHHHHHHHHHcCCeEEEEehhhcCC
Confidence 8899999998731 2457788888777 235999999999 889888777 8999999999998653
|
| >1h1y_A D-ribulose-5-phosphate 3-epimerase; oxidative pentose phosphate pathway, isomerase; 1.87A {Oryza sativa} SCOP: c.1.2.2 PDB: 1h1z_A | Back alignment and structure |
|---|
Probab=97.93 E-value=0.00039 Score=62.88 Aligned_cols=93 Identities=16% Similarity=0.186 Sum_probs=62.7
Q ss_pred HHHHHHHHhcCCCEEEEec-cCHHH-----HHc--CCcEEEEcC-CCc-cCCCCCcchHHHHHHHHHHcCCCceEEEecC
Q 017781 215 KDVKWLQTITKLPILVKGV-LTAED-----VQA--GAAGIIVSN-HGA-RQLDYVPATIMALEEVVKATQGRIPVFLDGG 284 (366)
Q Consensus 215 ~~i~~lr~~~~~pv~vK~v-~~~~d-----~~a--Gad~I~vs~-~gg-~~~~~~~~~~~~l~~i~~~~~~~i~vi~~GG 284 (366)
+.++.+++. ++++++-.- .++.+ .+. ++|+|.+.. ++| ......+..++.+.++++..+ ++||+++||
T Consensus 104 ~~~~~i~~~-g~~igv~~~p~t~~e~~~~~~~~~~~~d~vl~~sv~pg~~g~~~~~~~l~~i~~~~~~~~-~~pi~v~GG 181 (228)
T 1h1y_A 104 ELIQSIKAK-GMRPGVSLRPGTPVEEVFPLVEAENPVELVLVMTVEPGFGGQKFMPEMMEKVRALRKKYP-SLDIEVDGG 181 (228)
T ss_dssp HHHHHHHHT-TCEEEEEECTTSCGGGGHHHHHSSSCCSEEEEESSCTTCSSCCCCGGGHHHHHHHHHHCT-TSEEEEESS
T ss_pred HHHHHHHHc-CCCEEEEEeCCCCHHHHHHHHhcCCCCCEEEEEeecCCCCcccCCHHHHHHHHHHHHhcC-CCCEEEECC
Confidence 456666664 555555432 12222 333 999998743 222 112234456677888877653 789999999
Q ss_pred CCCHHHHHHHHHhCcCEEEecHHHHH
Q 017781 285 VRRGTDVFKALALGASGIFIGRPVVY 310 (366)
Q Consensus 285 I~~~~dv~kalalGAd~V~igr~~l~ 310 (366)
|.. +.+.+++..|||.+.+|+.++.
T Consensus 182 I~~-~ni~~~~~aGaD~vvvGsai~~ 206 (228)
T 1h1y_A 182 LGP-STIDVAASAGANCIVAGSSIFG 206 (228)
T ss_dssp CST-TTHHHHHHHTCCEEEESHHHHT
T ss_pred cCH-HHHHHHHHcCCCEEEECHHHHC
Confidence 987 8898999999999999999864
|
| >2agk_A 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino) methylideneamino] imidazole-4-carboxamide...; TIM alpha/beta barrel; HET: CIT; 1.30A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=97.93 E-value=1e-05 Score=75.26 Aligned_cols=68 Identities=12% Similarity=0.162 Sum_probs=53.0
Q ss_pred HHcCCcEEEEcCCCccCCCCCcchHHHHHHHHHHcCC--CceEEEecCCCCHHHHHHHHHh--CcCEEEecHHH
Q 017781 239 VQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQG--RIPVFLDGGVRRGTDVFKALAL--GASGIFIGRPV 308 (366)
Q Consensus 239 ~~aGad~I~vs~~gg~~~~~~~~~~~~l~~i~~~~~~--~i~vi~~GGI~~~~dv~kalal--GAd~V~igr~~ 308 (366)
.++ ++.|.++....-+...|+ .++.+.++.++++. ++|||++|||++.+|+.+++.+ ||++|++|+++
T Consensus 168 ~~~-a~~il~t~i~~dG~~~G~-d~eli~~l~~~~~~~~~iPVIasGGi~s~ed~~~l~~~~~G~~gvivg~al 239 (260)
T 2agk_A 168 RKY-TNEFLIHAADVEGLCGGI-DELLVSKLFEWTKDYDDLKIVYAGGAKSVDDLKLVDELSHGKVDLTFGSSL 239 (260)
T ss_dssp TTT-CSEEEEEC-------CCC-CHHHHHHHHHHHTTCSSCEEEEESCCCCTHHHHHHHHHHTTCEEEECCTTB
T ss_pred HHh-cCEEEEEeeccccCcCCC-CHHHHHHHHHhhcccCCceEEEeCCCCCHHHHHHHHHhcCCCCEEEeeCCH
Confidence 667 899988653221223454 89999999988732 6999999999999999999998 99999999997
|
| >3jr2_A Hexulose-6-phosphate synthase SGBH; 3-keto-L-gulonate-6-phosphate decarboxylase, ULAD, niaid,CSG bound, biosynthetic protein; HET: MSE; 1.80A {Vibrio cholerae} SCOP: c.1.2.0 PDB: 3ieb_A* | Back alignment and structure |
|---|
Probab=97.91 E-value=5e-05 Score=68.39 Aligned_cols=164 Identities=16% Similarity=0.184 Sum_probs=93.4
Q ss_pred hhHHHHHHHHHcCCcee-cCC-----CCCCCHHHHhccCC-CceEEEeeecCCHHHHHHHHHHHHHcCCCEEEEecCCCC
Q 017781 89 GEYATARAASAAGTIMT-LSS-----WSTSSVEEVASTGP-GIRFFQLYVYKDRNVVAQLVRRAERAGFKAIALTVDTPR 161 (366)
Q Consensus 89 ~e~~la~aa~~~G~~~~-vs~-----~~~~~~e~i~~~~~-~~~~~Qly~~~d~~~~~~~l~ra~~~G~~ai~vtvd~p~ 161 (366)
....+++.. +.|+... ++. .....++++++..+ .+.++-++....++. .++.+.++|++.+.++...+
T Consensus 20 ~~~~~~~~~-~~~vd~ie~g~~~~~~~G~~~i~~lr~~~~~~~i~ld~~l~d~p~~---~~~~~~~aGad~i~vh~~~~- 94 (218)
T 3jr2_A 20 DAVAVASNV-ASYVDVIEVGTILAFAEGMKAVSTLRHNHPNHILVCDMKTTDGGAI---LSRMAFEAGADWITVSAAAH- 94 (218)
T ss_dssp HHHHHHHHH-GGGCSEEEECHHHHHHHTTHHHHHHHHHCTTSEEEEEEEECSCHHH---HHHHHHHHTCSEEEEETTSC-
T ss_pred HHHHHHHHh-cCCceEEEeCcHHHHhcCHHHHHHHHHhCCCCcEEEEEeecccHHH---HHHHHHhcCCCEEEEecCCC-
Confidence 345666664 3344443 331 12233566666643 355555555433332 55778889999987753211
Q ss_pred CcchhHHHhhhcCCCCccccccccccccCCCccccchhhHHHhhhccCCCCCH-HHHHHHHHhcCCCEEEE--eccCHHH
Q 017781 162 LGRREADIKNRFTLPPFLTLKNFQGLDLGKMDEANDSGLAAYVAGQIDRSLSW-KDVKWLQTITKLPILVK--GVLTAED 238 (366)
Q Consensus 162 ~g~r~~d~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~-~~i~~lr~~~~~pv~vK--~v~~~~d 238 (366)
..+. +.++.+++. +++..+. ++.|.++
T Consensus 95 -------------------------------------------------~~~~~~~~~~~~~~-g~~~~~d~l~~~T~~~ 124 (218)
T 3jr2_A 95 -------------------------------------------------IATIAACKKVADEL-NGEIQIEIYGNWTMQD 124 (218)
T ss_dssp -------------------------------------------------HHHHHHHHHHHHHH-TCEEEEECCSSCCHHH
T ss_pred -------------------------------------------------HHHHHHHHHHHHHh-CCccceeeeecCCHHH
Confidence 0011 234444443 5554432 3356654
Q ss_pred ----HHcCCcEEEEcCC--Ccc-CCCCCcchHHHHHHHHHHcCCCceEEEecCCCCHHHHHHHHHhCcCEEEecHHHHHH
Q 017781 239 ----VQAGAAGIIVSNH--GAR-QLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFIGRPVVYS 311 (366)
Q Consensus 239 ----~~aGad~I~vs~~--gg~-~~~~~~~~~~~l~~i~~~~~~~i~vi~~GGI~~~~dv~kalalGAd~V~igr~~l~~ 311 (366)
.+.|+|.+++... .+. .....+..++.++++. +.++|++++||| +.+.+.+++++|||.|.+||++..+
T Consensus 125 ~~~~~~~g~d~v~~~~~~~~~~~g~~~~~~~l~~i~~~~---~~~~pi~v~GGI-~~~~~~~~~~aGAd~vvvGsaI~~a 200 (218)
T 3jr2_A 125 AKAWVDLGITQAIYHRSRDAELAGIGWTTDDLDKMRQLS---ALGIELSITGGI-VPEDIYLFEGIKTKTFIAGRALAGA 200 (218)
T ss_dssp HHHHHHTTCCEEEEECCHHHHHHTCCSCHHHHHHHHHHH---HTTCEEEEESSC-CGGGGGGGTTSCEEEEEESGGGSHH
T ss_pred HHHHHHcCccceeeeeccccccCCCcCCHHHHHHHHHHh---CCCCCEEEECCC-CHHHHHHHHHcCCCEEEEchhhcCC
Confidence 5679998876321 110 0112233344444443 237999999999 5899999999999999999987643
|
| >1vhc_A Putative KHG/KDPG aldolase; structural genomics, unknown function; HET: MSE; 1.89A {Haemophilus influenzae} SCOP: c.1.10.1 | Back alignment and structure |
|---|
Probab=97.88 E-value=0.0002 Score=64.89 Aligned_cols=162 Identities=15% Similarity=0.173 Sum_probs=94.4
Q ss_pred cCCHHHHHHHHHHHHHcCCCEEEEecCCCCCcchhHHHhhhcCCCCccccccccccccCCCccccchhhHHHhhhccCCC
Q 017781 132 YKDRNVVAQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLTLKNFQGLDLGKMDEANDSGLAAYVAGQIDRS 211 (366)
Q Consensus 132 ~~d~~~~~~~l~ra~~~G~~ai~vtvd~p~~g~r~~d~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~ 211 (366)
..+.+...+.++.+.+.|++.+.++...+..-...+.++..+ |. +... ......+...+........++ .-|.
T Consensus 25 ~~~~~~~~~~~~al~~gGv~~iel~~k~~~~~~~i~~l~~~~--~~-l~vg-aGtvl~~d~~~~A~~aGAd~v---~~p~ 97 (224)
T 1vhc_A 25 LDNADDILPLADTLAKNGLSVAEITFRSEAAADAIRLLRANR--PD-FLIA-AGTVLTAEQVVLAKSSGADFV---VTPG 97 (224)
T ss_dssp CSSGGGHHHHHHHHHHTTCCEEEEETTSTTHHHHHHHHHHHC--TT-CEEE-EESCCSHHHHHHHHHHTCSEE---ECSS
T ss_pred CCCHHHHHHHHHHHHHcCCCEEEEeccCchHHHHHHHHHHhC--cC-cEEe-eCcEeeHHHHHHHHHCCCCEE---EECC
Confidence 455555566677777777887777766554322233344433 21 1100 000000000000000000111 1234
Q ss_pred CCHHHHHHHHHhcCCCEEEEeccCHHH----HHcCCcEEEEcCCCccCCCCCcchHHHHHHHHHHcCCCceEEEecCCCC
Q 017781 212 LSWKDVKWLQTITKLPILVKGVLTAED----VQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRR 287 (366)
Q Consensus 212 ~~~~~i~~lr~~~~~pv~vK~v~~~~d----~~aGad~I~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~i~vi~~GGI~~ 287 (366)
.+.+.++..|+ .+.|+++ |+.|+.+ .++|+|+|.+.. .. .....+.|++++..++ ++|+++.||| +
T Consensus 98 ~d~~v~~~ar~-~g~~~i~-Gv~t~~e~~~A~~~Gad~vk~Fp--a~----~~gG~~~lk~l~~~~~-~ipvvaiGGI-~ 167 (224)
T 1vhc_A 98 LNPKIVKLCQD-LNFPITP-GVNNPMAIEIALEMGISAVKFFP--AE----ASGGVKMIKALLGPYA-QLQIMPTGGI-G 167 (224)
T ss_dssp CCHHHHHHHHH-TTCCEEC-EECSHHHHHHHHHTTCCEEEETT--TT----TTTHHHHHHHHHTTTT-TCEEEEBSSC-C
T ss_pred CCHHHHHHHHH-hCCCEEe-ccCCHHHHHHHHHCCCCEEEEee--Cc----cccCHHHHHHHHhhCC-CCeEEEECCc-C
Confidence 45666788887 7888777 5888877 888999999843 10 0112566777776554 6999999999 5
Q ss_pred HHHHHHHHHh-CcCEEEecHHHHHH
Q 017781 288 GTDVFKALAL-GASGIFIGRPVVYS 311 (366)
Q Consensus 288 ~~dv~kalal-GAd~V~igr~~l~~ 311 (366)
.+++...+++ |+++|. |+.+..+
T Consensus 168 ~~N~~~~l~agga~~v~-gS~i~~~ 191 (224)
T 1vhc_A 168 LHNIRDYLAIPNIVACG-GSWFVEK 191 (224)
T ss_dssp TTTHHHHHTSTTBCCEE-ECGGGCH
T ss_pred HHHHHHHHhcCCCEEEE-EchhcCc
Confidence 6899999998 899999 8877543
|
| >3o63_A Probable thiamine-phosphate pyrophosphorylase; thiamin biosynthesis, TIM barrel, transferase; 2.35A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=97.87 E-value=7.8e-05 Score=68.50 Aligned_cols=78 Identities=14% Similarity=0.131 Sum_probs=56.9
Q ss_pred eccCHHH----HHcCCcEEEEcCCCccC--CCCCcchHHHHHHHHHHcCCCceEEEecCCCCHHHHHHHHHhCcCEEEec
Q 017781 232 GVLTAED----VQAGAAGIIVSNHGARQ--LDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFIG 305 (366)
Q Consensus 232 ~v~~~~d----~~aGad~I~vs~~gg~~--~~~~~~~~~~l~~i~~~~~~~i~vi~~GGI~~~~dv~kalalGAd~V~ig 305 (366)
-+.+.++ .+.|+|+|.+++-..+. .+..+..++.+.++++....++||++.||| +.+++.+++.+||++|.++
T Consensus 141 S~ht~~Ea~~A~~~GaDyI~vgpvf~T~tK~~~~~~gl~~l~~~~~~~~~~iPvvAiGGI-~~~ni~~~~~aGa~gvav~ 219 (243)
T 3o63_A 141 STHDPDQVAAAAAGDADYFCVGPCWPTPTKPGRAAPGLGLVRVAAELGGDDKPWFAIGGI-NAQRLPAVLDAGARRIVVV 219 (243)
T ss_dssp EECSHHHHHHHHHSSCSEEEECCSSCCCC-----CCCHHHHHHHHTC---CCCEEEESSC-CTTTHHHHHHTTCCCEEES
T ss_pred eCCCHHHHHHHhhCCCCEEEEcCccCCCCCCCcchhhHHHHHHHHHhccCCCCEEEecCC-CHHHHHHHHHcCCCEEEEe
Confidence 4567776 67899999997633221 111234567777776542237999999999 9999999999999999999
Q ss_pred HHHHH
Q 017781 306 RPVVY 310 (366)
Q Consensus 306 r~~l~ 310 (366)
+.++.
T Consensus 220 sai~~ 224 (243)
T 3o63_A 220 RAITS 224 (243)
T ss_dssp HHHHT
T ss_pred HHHhC
Confidence 99864
|
| >1ujp_A Tryptophan synthase alpha chain; riken structural genomics/P initiative, RSGI, structural genomics, lyase; HET: CIT; 1.34A {Thermus thermophilus} SCOP: c.1.2.4 PDB: 1wxj_A* | Back alignment and structure |
|---|
Probab=97.85 E-value=6.6e-05 Score=70.13 Aligned_cols=48 Identities=23% Similarity=0.302 Sum_probs=41.6
Q ss_pred chHHHHHHHHHHcCCCceEEEecCCCCHHHHHHHHHhCcCEEEecHHHHHHh
Q 017781 261 ATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFIGRPVVYSL 312 (366)
Q Consensus 261 ~~~~~l~~i~~~~~~~i~vi~~GGI~~~~dv~kalalGAd~V~igr~~l~~l 312 (366)
...+.+.++++.. ++||++.|||++++++.++ .|||+|.+|+++...+
T Consensus 189 ~~~~~v~~vr~~~--~~Pv~vGfGI~t~e~a~~~--~~ADgVIVGSAi~~~~ 236 (271)
T 1ujp_A 189 EVKDLVRRIKART--ALPVAVGFGVSGKATAAQA--AVADGVVVGSALVRAL 236 (271)
T ss_dssp CCHHHHHHHHTTC--CSCEEEESCCCSHHHHHHH--TTSSEEEECHHHHHHH
T ss_pred cHHHHHHHHHhhc--CCCEEEEcCCCCHHHHHHh--cCCCEEEEChHHhccc
Confidence 3456788887765 7999999999999999996 9999999999998764
|
| >2a4a_A Deoxyribose-phosphate aldolase; lyase, TIM beta/alpha barrel, DEOC, DERA, structur genomics, structural genomics consortium, SGC; 1.84A {Plasmodium yoelii yoelii} SCOP: c.1.10.1 | Back alignment and structure |
|---|
Probab=97.84 E-value=0.00011 Score=68.63 Aligned_cols=83 Identities=18% Similarity=0.192 Sum_probs=58.0
Q ss_pred CHHHHHHHHHhcCCCEEEEecc------CHHH--------HHcCCcEEEEcCCCccCCCCCcchHHHHHHHHHHc-----
Q 017781 213 SWKDVKWLQTITKLPILVKGVL------TAED--------VQAGAAGIIVSNHGARQLDYVPATIMALEEVVKAT----- 273 (366)
Q Consensus 213 ~~~~i~~lr~~~~~pv~vK~v~------~~~d--------~~aGad~I~vs~~gg~~~~~~~~~~~~l~~i~~~~----- 273 (366)
..++|+.+++..+ +..+|.++ +.+. .++|||+|..|...+ .+..+.+.+.-+++.+
T Consensus 143 v~~eI~~v~~a~~-~~~lKVIlEt~~L~d~e~i~~A~~ia~eaGADfVKTSTGf~----~~gAT~edv~lm~~~v~~~~~ 217 (281)
T 2a4a_A 143 ATKLTQSVKKLLT-NKILKVIIEVGELKTEDLIIKTTLAVLNGNADFIKTSTGKV----QINATPSSVEYIIKAIKEYIK 217 (281)
T ss_dssp HHHHHHHHHTTCT-TSEEEEECCHHHHCSHHHHHHHHHHHHTTTCSEEECCCSCS----SCCCCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhc-CCceEEEEecccCCcHHHHHHHHHHHHHhCCCEEEeCCCCC----CCCCCHHHHHHHHHHHHHhhc
Confidence 4567888888775 35788763 2231 899999999875211 1223444333333333
Q ss_pred -----CCCceEEEecCCCCHHHHHHHHHhCcC
Q 017781 274 -----QGRIPVFLDGGVRRGTDVFKALALGAS 300 (366)
Q Consensus 274 -----~~~i~vi~~GGI~~~~dv~kalalGAd 300 (366)
+.+++|-++||||+.+|+.+.+.+||+
T Consensus 218 ~~~~tg~~vgVKaaGGIrt~e~al~~i~aga~ 249 (281)
T 2a4a_A 218 NNPEKNNKIGLKVSGGISDLNTASHYILLARR 249 (281)
T ss_dssp HCGGGTTCCEEEEESSCCSHHHHHHHHHHHHH
T ss_pred ccccCCCCceEEEeCCCCCHHHHHHHHHHhhh
Confidence 568999999999999999999999987
|
| >1p1x_A Deoxyribose-phosphate aldolase; alpha-beta barrel, TIM barrel, lyase; 0.99A {Escherichia coli} SCOP: c.1.10.1 PDB: 1jcl_A 1jcj_A* 1ktn_A 3npv_B 3npu_A 3npw_A 3nq2_A 3npx_A 3nq8_A 3q2d_A* 3nr0_A 3nqv_A | Back alignment and structure |
|---|
Probab=97.81 E-value=0.00011 Score=68.04 Aligned_cols=84 Identities=24% Similarity=0.225 Sum_probs=58.5
Q ss_pred CHHHHHHHHHhcC-CCEEEEecc-----C-HHH--------HHcCCcEEEEcCCCccCCCCCcchHHHHHHHHHH-----
Q 017781 213 SWKDVKWLQTITK-LPILVKGVL-----T-AED--------VQAGAAGIIVSNHGARQLDYVPATIMALEEVVKA----- 272 (366)
Q Consensus 213 ~~~~i~~lr~~~~-~pv~vK~v~-----~-~~d--------~~aGad~I~vs~~gg~~~~~~~~~~~~l~~i~~~----- 272 (366)
..++|+.+++..+ .+..+|.++ + .+. .++|||+|..|...+ .+..+.+.+...++.
T Consensus 119 v~~ei~~v~~a~~~~g~~lKvIlEt~~L~d~e~i~~a~~ia~eaGADfVKTSTGf~----~~gAt~e~v~lm~~~I~~~~ 194 (260)
T 1p1x_A 119 GFDLVKACKEACAAANVLLKVIIETGELKDEALIRKASEISIKAGADFIKTSTGKV----AVNATPESARIMMEVIRDMG 194 (260)
T ss_dssp HHHHHHHHHHHHHHTTCEEEEECCHHHHCSHHHHHHHHHHHHHTTCSEEECCCSCS----SCCCCHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHhcccCCeEEEEEecccCCcHHHHHHHHHHHHHhCCCEEEeCCCCC----CCCCCHHHHHHHHHHHHHhc
Confidence 4567888887753 245788663 2 331 899999999875211 122455544334443
Q ss_pred cCCCceEEEecCCCCHHHHHHHHHhCcC
Q 017781 273 TQGRIPVFLDGGVRRGTDVFKALALGAS 300 (366)
Q Consensus 273 ~~~~i~vi~~GGI~~~~dv~kalalGAd 300 (366)
++.+++|-++||||+.+|+.+.+.+||+
T Consensus 195 ~g~~v~VKaaGGIrt~~~al~~i~aga~ 222 (260)
T 1p1x_A 195 VEKTVGFKPAGGVRTAEDAQKYLAIADE 222 (260)
T ss_dssp CTTTCEEECBSSCCSHHHHHHHHHHHHH
T ss_pred CCCCceEEEeCCCCCHHHHHHHHHhhhh
Confidence 4568999999999999999999999987
|
| >3glc_A Aldolase LSRF; TIM barrel, lyase, schiff base; HET: R5P; 2.50A {Escherichia coli} PDB: 3gnd_A* 3gkf_O | Back alignment and structure |
|---|
Probab=97.75 E-value=0.00038 Score=65.67 Aligned_cols=60 Identities=27% Similarity=0.430 Sum_probs=45.4
Q ss_pred HHcCCcEEEEcCCCccCCCCCcchHHHHHHHHHHcCCCceEEEecCCCCH-H----HHHHHHHhCcCEEEecHHHHHH
Q 017781 239 VQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRG-T----DVFKALALGASGIFIGRPVVYS 311 (366)
Q Consensus 239 ~~aGad~I~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~i~vi~~GGI~~~-~----dv~kalalGAd~V~igr~~l~~ 311 (366)
.++|||+|.++-. + +.+.++++.. .+||++.||+... + .+.+++.+||++|.+||.++..
T Consensus 199 ~elGAD~VKt~~t-~----------e~~~~vv~~~--~vPVv~~GG~~~~~~~~l~~v~~ai~aGA~Gv~vGRnI~q~ 263 (295)
T 3glc_A 199 AEMGAQIIKTYYV-E----------KGFERIVAGC--PVPIVIAGGKKLPEREALEMCWQAIDQGASGVDMGRNIFQS 263 (295)
T ss_dssp HHTTCSEEEEECC-T----------TTHHHHHHTC--SSCEEEECCSCCCHHHHHHHHHHHHHTTCSEEEESHHHHTS
T ss_pred HHhCCCEEEeCCC-H----------HHHHHHHHhC--CCcEEEEECCCCCHHHHHHHHHHHHHhCCeEEEeHHHHhcC
Confidence 8999999988621 1 2356666655 7999999999953 3 4556778999999999988653
|
| >1ka9_F Imidazole glycerol phosphtate synthase; riken structural genomics/proteomics initiative, RSGI, structural genomics, transferase; 2.30A {Thermus thermophilus} SCOP: c.1.2.1 | Back alignment and structure |
|---|
Probab=97.65 E-value=0.00015 Score=66.27 Aligned_cols=69 Identities=25% Similarity=0.311 Sum_probs=53.2
Q ss_pred HHcCCcEEEEcCCCccCCCCCcchHHHHHHHHHHcCCCceEEEecCCCCHHHHHHHHHhCcCEEEecHHHHH
Q 017781 239 VQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFIGRPVVY 310 (366)
Q Consensus 239 ~~aGad~I~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~i~vi~~GGI~~~~dv~kalalGAd~V~igr~~l~ 310 (366)
.++|+|.|.++.-.+.. ......++.+.++++.+ ++||++.|||++.+++.+++++|||+|.+|+.++.
T Consensus 41 ~~~Gad~i~v~d~~~~~-~~~~~~~~~i~~i~~~~--~iPvi~~Ggi~~~~~~~~~~~~Gad~V~lg~~~l~ 109 (252)
T 1ka9_F 41 DEAGADELVFLDISATH-EERAILLDVVARVAERV--FIPLTVGGGVRSLEDARKLLLSGADKVSVNSAAVR 109 (252)
T ss_dssp HHHTCSCEEEEECCSST-TCHHHHHHHHHHHHTTC--CSCEEEESSCCSHHHHHHHHHHTCSEEEECHHHHH
T ss_pred HHcCCCEEEEEcCCccc-cCccccHHHHHHHHHhC--CCCEEEECCcCCHHHHHHHHHcCCCEEEEChHHHh
Confidence 56789998887422110 11223566777777766 79999999999999999999999999999998864
|
| >1thf_D HISF protein; thermophIle, TIM-barrel, histidine biosynthesis, lyase, phosphate-binding sites; 1.45A {Thermotoga maritima} SCOP: c.1.2.1 PDB: 2wjz_A 2a0n_A* 1gpw_A 1vh7_A 2rkx_A 3iio_A 3iip_A* 3iiv_A | Back alignment and structure |
|---|
Probab=97.64 E-value=8.4e-05 Score=67.99 Aligned_cols=69 Identities=17% Similarity=0.240 Sum_probs=53.7
Q ss_pred HHcCCcEEEEcCCCccCCCCCcchHHHHHHHHHHcCCCceEEEecCCCCHHHHHHHHHhCcCEEEecHHHHH
Q 017781 239 VQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFIGRPVVY 310 (366)
Q Consensus 239 ~~aGad~I~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~i~vi~~GGI~~~~dv~kalalGAd~V~igr~~l~ 310 (366)
.++|+|.|.++...+.. ......++.+.++++.+ ++||++.|||++.+++.+++++|||+|.+|+..+.
T Consensus 40 ~~~Gad~i~v~d~~~~~-~~~~~~~~~i~~i~~~~--~ipvi~~ggI~~~~~~~~~~~~Gad~V~lg~~~l~ 108 (253)
T 1thf_D 40 SEIGIDELVFLDITASV-EKRKTMLELVEKVAEQI--DIPFTVGGGIHDFETASELILRGADKVSINTAAVE 108 (253)
T ss_dssp HHTTCCEEEEEESSCSS-SHHHHHHHHHHHHHTTC--CSCEEEESSCCSHHHHHHHHHTTCSEEEESHHHHH
T ss_pred HHcCCCEEEEECCchhh-cCCcccHHHHHHHHHhC--CCCEEEeCCCCCHHHHHHHHHcCCCEEEEChHHHh
Confidence 57899999987643211 11223456777777665 79999999999999999999999999999998764
|
| >1wbh_A KHG/KDPG aldolase; lyase; 1.55A {Escherichia coli} SCOP: c.1.10.1 PDB: 2c0a_A 1wau_A 1eua_A 1eun_A 1fq0_A* 1fwr_A* | Back alignment and structure |
|---|
Probab=97.64 E-value=0.0014 Score=58.85 Aligned_cols=166 Identities=16% Similarity=0.135 Sum_probs=95.0
Q ss_pred EEeeecCCHHHHHHHHHHHHHcCCCEEEEecCCCCCcchhHHHhhhcCCCCccccccccccccCCCccccchhhHHHhhh
Q 017781 127 FQLYVYKDRNVVAQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLTLKNFQGLDLGKMDEANDSGLAAYVAG 206 (366)
Q Consensus 127 ~Qly~~~d~~~~~~~l~ra~~~G~~ai~vtvd~p~~g~r~~d~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 206 (366)
+-+....+.+...+.++.+.+.|++.+.++...+..-...+.++..+ |. +... ...+..+...+........++.
T Consensus 19 i~v~r~~~~~~~~~~~~al~~gGv~~iel~~k~~~~~~~i~~l~~~~--~~-~~vg-agtvi~~d~~~~A~~aGAd~v~- 93 (214)
T 1wbh_A 19 VPVIVVKKLEHAVPMAKALVAGGVRVLNVTLRTECAVDAIRAIAKEV--PE-AIVG-AGTVLNPQQLAEVTEAGAQFAI- 93 (214)
T ss_dssp EEEECCSSGGGHHHHHHHHHHTTCCEEEEESCSTTHHHHHHHHHHHC--TT-SEEE-EESCCSHHHHHHHHHHTCSCEE-
T ss_pred EEEEECCCHHHHHHHHHHHHHcCCCEEEEeCCChhHHHHHHHHHHHC--cC-CEEe-eCEEEEHHHHHHHHHcCCCEEE-
Confidence 33444456666667777788888888888877654323333344443 21 1100 0000000000000000001111
Q ss_pred ccCCCCCHHHHHHHHHhcCCCEEEEeccCHHH----HHcCCcEEEEcCCCccCCCCCcchHHHHHHHHHHcCCCceEEEe
Q 017781 207 QIDRSLSWKDVKWLQTITKLPILVKGVLTAED----VQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLD 282 (366)
Q Consensus 207 ~~d~~~~~~~i~~lr~~~~~pv~vK~v~~~~d----~~aGad~I~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~i~vi~~ 282 (366)
-|..+.+.++.. +..+.|++. |+.|+++ .++|+|+|.+.. .. .....+.|.+++..++ ++|+++.
T Consensus 94 --~p~~d~~v~~~~-~~~g~~~i~-G~~t~~e~~~A~~~Gad~v~~Fp--a~----~~gG~~~lk~i~~~~~-~ipvvai 162 (214)
T 1wbh_A 94 --SPGLTEPLLKAA-TEGTIPLIP-GISTVSELMLGMDYGLKEFKFFP--AE----ANGGVKALQAIAGPFS-QVRFCPT 162 (214)
T ss_dssp --ESSCCHHHHHHH-HHSSSCEEE-EESSHHHHHHHHHTTCCEEEETT--TT----TTTHHHHHHHHHTTCT-TCEEEEB
T ss_pred --cCCCCHHHHHHH-HHhCCCEEE-ecCCHHHHHHHHHCCCCEEEEec--Cc----cccCHHHHHHHhhhCC-CCeEEEE
Confidence 123344444444 447888776 5888877 889999999833 11 0112566777776554 7999999
Q ss_pred cCCCCHHHHHHHHHh-CcCEEEecHHHHH
Q 017781 283 GGVRRGTDVFKALAL-GASGIFIGRPVVY 310 (366)
Q Consensus 283 GGI~~~~dv~kalal-GAd~V~igr~~l~ 310 (366)
||| +.+++...+++ |+++|. |+.+..
T Consensus 163 GGI-~~~n~~~~l~agg~~~v~-gS~i~~ 189 (214)
T 1wbh_A 163 GGI-SPANYRDYLALKSVLCIG-GSWLVP 189 (214)
T ss_dssp SSC-CTTTHHHHHTSTTBSCEE-EGGGSC
T ss_pred CCC-CHHHHHHHHhcCCCeEEE-eccccC
Confidence 999 56899999999 899999 887754
|
| >3ctl_A D-allulose-6-phosphate 3-epimerase; D-glucitol 6-phosphate, (beta/alpha)8 barrel, carbohydrate metabolism, isomerase; HET: S6P; 2.20A {Escherichia coli} PDB: 3ct7_A* | Back alignment and structure |
|---|
Probab=97.63 E-value=0.00068 Score=61.70 Aligned_cols=68 Identities=19% Similarity=0.218 Sum_probs=46.7
Q ss_pred cCCcEEEE-cCCCcc-CCCCCcchHHHHHHHHHHcC---CCceEEEecCCCCHHHHHHHHHhCcCEEEec-HHHH
Q 017781 241 AGAAGIIV-SNHGAR-QLDYVPATIMALEEVVKATQ---GRIPVFLDGGVRRGTDVFKALALGASGIFIG-RPVV 309 (366)
Q Consensus 241 aGad~I~v-s~~gg~-~~~~~~~~~~~l~~i~~~~~---~~i~vi~~GGI~~~~dv~kalalGAd~V~ig-r~~l 309 (366)
.++|.|.+ +-+.|. .....+..++.+.++++... .+++|.++|||. .+.+.++..+|||.+.+| +.+.
T Consensus 127 ~~~D~VlvmsV~pGfggQ~f~~~~l~kI~~lr~~~~~~~~~~~I~VdGGI~-~~~~~~~~~aGAd~~V~G~saif 200 (231)
T 3ctl_A 127 HKADKITVMTVDPGFAGQPFIPEMLDKLAELKAWREREGLEYEIEVDGSCN-QATYEKLMAAGADVFIVGTSGLF 200 (231)
T ss_dssp GGCSEEEEESSCTTCSSCCCCTTHHHHHHHHHHHHHHHTCCCEEEEESCCS-TTTHHHHHHHTCCEEEECTTTTG
T ss_pred hcCCEEEEeeeccCcCCccccHHHHHHHHHHHHHHhccCCCceEEEECCcC-HHHHHHHHHcCCCEEEEccHHHh
Confidence 46787753 222221 11234556677777766542 268999999997 677888999999999999 7764
|
| >3vk5_A MOEO5; TIM barrel, transferase; HET: FPQ; 1.39A {Streptomyces ghanaensis} PDB: 3vka_A* 3vkb_A* 3vkc_A* 3vkd_A* | Back alignment and structure |
|---|
Probab=97.63 E-value=0.00013 Score=68.07 Aligned_cols=66 Identities=17% Similarity=0.135 Sum_probs=54.5
Q ss_pred HHcCCcEEEEcCCCccCCCCCcchHHHHHHHHHHcCCCceEEEecCCCCHHHHHHHHHhCcCEEEecHHHHH
Q 017781 239 VQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFIGRPVVY 310 (366)
Q Consensus 239 ~~aGad~I~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~i~vi~~GGI~~~~dv~kalalGAd~V~igr~~l~ 310 (366)
.+.|.+.|.+...+ .+...+.+.++++.+.+.+||++.|||++.+|+.+++.+|||.|.+|+.++.
T Consensus 196 ad~G~~lV~LD~~~------~~v~~e~V~~I~~~~~~~iPV~vGGGIrs~Eda~~ll~aGAD~VVVGSAav~ 261 (286)
T 3vk5_A 196 RAFGFHMVYLYSRN------EHVPPEVVRHFRKGLGPDQVLFVSGNVRSGRQVTEYLDSGADYVGFAGALEQ 261 (286)
T ss_dssp HHTTCSEEEEECSS------SCCCHHHHHHHHHHSCTTCEEEEESSCCSHHHHHHHHHTTCSEEEESGGGSS
T ss_pred HHcCCCEEEEcCCC------CcCCHHHHHHHHHhcCCCCCEEEEeCCCCHHHHHHHHHcCCCEEEECchhhc
Confidence 56777888887432 3446688889988874469999999999999999999999999999998763
|
| >1tqj_A Ribulose-phosphate 3-epimerase; beta-alpha barrel epimerase, isomerase; 1.60A {Synechocystis SP} SCOP: c.1.2.2 | Back alignment and structure |
|---|
Probab=97.62 E-value=0.00035 Score=63.53 Aligned_cols=164 Identities=15% Similarity=0.185 Sum_probs=97.2
Q ss_pred HHHHHHHHHcCCcee-c----CCCC---CC---CHHHHhccCCCceEEEeeecCCHHHHHHHHHHHHHcCCCEEEEecC-
Q 017781 91 YATARAASAAGTIMT-L----SSWS---TS---SVEEVASTGPGIRFFQLYVYKDRNVVAQLVRRAERAGFKAIALTVD- 158 (366)
Q Consensus 91 ~~la~aa~~~G~~~~-v----s~~~---~~---~~e~i~~~~~~~~~~Qly~~~d~~~~~~~l~ra~~~G~~ai~vtvd- 158 (366)
....+.+.+.|+-+. + +.+. +. .++++++....++-..|.. .|++ +.++.+.++|++.+.++..
T Consensus 20 ~~~i~~~~~~Gad~ihldi~DG~fvp~~~~g~~~v~~lr~~~~~~~~vhlmv-~dp~---~~i~~~~~aGadgv~vh~e~ 95 (230)
T 1tqj_A 20 GEEIKAVDEAGADWIHVDVMDGRFVPNITIGPLIVDAIRPLTKKTLDVHLMI-VEPE---KYVEDFAKAGADIISVHVEH 95 (230)
T ss_dssp HHHHHHHHHTTCSEEEEEEEBSSSSSCBCBCHHHHHHHGGGCCSEEEEEEES-SSGG---GTHHHHHHHTCSEEEEECST
T ss_pred HHHHHHHHHcCCCEEEEEEEecCCCcchhhhHHHHHHHHhhcCCcEEEEEEc-cCHH---HHHHHHHHcCCCEEEECccc
Confidence 356677777787653 2 2211 11 2234444432345545655 4653 3567788899999887644
Q ss_pred -CCCCcchhHHHhhhcCCCCccccccccccccCCCccccchhhHHHhhhccCCCCCHHHHHHHHHhcCCCEEEEec-cCH
Q 017781 159 -TPRLGRREADIKNRFTLPPFLTLKNFQGLDLGKMDEANDSGLAAYVAGQIDRSLSWKDVKWLQTITKLPILVKGV-LTA 236 (366)
Q Consensus 159 -~p~~g~r~~d~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~i~~lr~~~~~pv~vK~v-~~~ 236 (366)
.. +...+.++.+++. ++-+.+=.- .|+
T Consensus 96 ~~~--------------------------------------------------~~~~~~~~~i~~~-g~~~gv~~~p~t~ 124 (230)
T 1tqj_A 96 NAS--------------------------------------------------PHLHRTLCQIREL-GKKAGAVLNPSTP 124 (230)
T ss_dssp TTC--------------------------------------------------TTHHHHHHHHHHT-TCEEEEEECTTCC
T ss_pred ccc--------------------------------------------------hhHHHHHHHHHHc-CCcEEEEEeCCCc
Confidence 21 0112345566553 443333322 233
Q ss_pred HH----HHcCCcEEEEcC-CCccC-CCCCcchHHHHHHHHHHcC---CCceEEEecCCCCHHHHHHHHHhCcCEEEecHH
Q 017781 237 ED----VQAGAAGIIVSN-HGARQ-LDYVPATIMALEEVVKATQ---GRIPVFLDGGVRRGTDVFKALALGASGIFIGRP 307 (366)
Q Consensus 237 ~d----~~aGad~I~vs~-~gg~~-~~~~~~~~~~l~~i~~~~~---~~i~vi~~GGI~~~~dv~kalalGAd~V~igr~ 307 (366)
.+ ...++|.|.+.. ++|.. ....+..++.+.++++... .++||.++|||.. +.+.++..+|||.+.+|+.
T Consensus 125 ~e~~~~~~~~~D~v~~msv~pg~ggq~~~~~~~~~i~~lr~~~~~~~~~~~I~v~GGI~~-~~~~~~~~aGad~vvvGSa 203 (230)
T 1tqj_A 125 LDFLEYVLPVCDLILIMSVNPGFGGQSFIPEVLPKIRALRQMCDERGLDPWIEVDGGLKP-NNTWQVLEAGANAIVAGSA 203 (230)
T ss_dssp GGGGTTTGGGCSEEEEESSCC----CCCCGGGHHHHHHHHHHHHHHTCCCEEEEESSCCT-TTTHHHHHHTCCEEEESHH
T ss_pred HHHHHHHHhcCCEEEEEEeccccCCccCcHHHHHHHHHHHHHHHhcCCCCcEEEECCcCH-HHHHHHHHcCCCEEEECHH
Confidence 33 445899886543 33211 1234556777777776552 2699999999997 8899999999999999998
Q ss_pred HHH
Q 017781 308 VVY 310 (366)
Q Consensus 308 ~l~ 310 (366)
++.
T Consensus 204 i~~ 206 (230)
T 1tqj_A 204 VFN 206 (230)
T ss_dssp HHT
T ss_pred HHC
Confidence 764
|
| >1h5y_A HISF; histidine biosynthesis, TIM-barrel; 2.0A {Pyrobaculum aerophilum} SCOP: c.1.2.1 | Back alignment and structure |
|---|
Probab=97.51 E-value=0.00021 Score=64.71 Aligned_cols=69 Identities=26% Similarity=0.346 Sum_probs=54.3
Q ss_pred HHcCCcEEEEcCCCccCCCCCcchHHHHHHHHHHcCCCceEEEecCCCCHHHHHHHHHhCcCEEEecHHHHH
Q 017781 239 VQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFIGRPVVY 310 (366)
Q Consensus 239 ~~aGad~I~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~i~vi~~GGI~~~~dv~kalalGAd~V~igr~~l~ 310 (366)
.++|+|+|.++...+.. ......++.+.++++.+ ++||++.|||++.+++.+++++|||+|.++++++.
T Consensus 43 ~~~G~d~i~v~~~~~~~-~~~~~~~~~i~~i~~~~--~ipvi~~g~i~~~~~~~~~~~~Gad~V~i~~~~~~ 111 (253)
T 1h5y_A 43 EEEGADEIAILDITAAP-EGRATFIDSVKRVAEAV--SIPVLVGGGVRSLEDATTLFRAGADKVSVNTAAVR 111 (253)
T ss_dssp HHTTCSCEEEEECCCCT-TTHHHHHHHHHHHHHHC--SSCEEEESSCCSHHHHHHHHHHTCSEEEESHHHHH
T ss_pred HHcCCCEEEEEeCCccc-cCCcccHHHHHHHHHhc--CCCEEEECCCCCHHHHHHHHHcCCCEEEEChHHhh
Confidence 67899999887533211 11223567788888777 79999999999999999999999999999998763
|
| >2y88_A Phosphoribosyl isomerase A; aromatic amino acid biosynthesis, TIM-barrel, His biosynthesis, tryptophan biosynthesis; HET: 2ER; 1.33A {Mycobacterium tuberculosis} PDB: 2y89_A 2y85_A* | Back alignment and structure |
|---|
Probab=97.48 E-value=0.00042 Score=62.92 Aligned_cols=68 Identities=26% Similarity=0.299 Sum_probs=54.4
Q ss_pred HHcCCcEEEEcCCCccCCCCCcchHHHHHHHHHHcCCCceEEEecCCCCHHHHHHHHHhCcCEEEecHHHHH
Q 017781 239 VQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFIGRPVVY 310 (366)
Q Consensus 239 ~~aGad~I~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~i~vi~~GGI~~~~dv~kalalGAd~V~igr~~l~ 310 (366)
.++|+|.|.+..-.+.. ...+.. +.+.++++.+ ++|+++.|||++++++.+++++|||.|.+|+..+.
T Consensus 41 ~~~Gad~i~v~~~d~~~-~~~~~~-~~i~~i~~~~--~ipv~v~ggi~~~~~~~~~l~~Gad~V~lg~~~l~ 108 (244)
T 2y88_A 41 QRDGAEWIHLVDLDAAF-GRGSNH-ELLAEVVGKL--DVQVELSGGIRDDESLAAALATGCARVNVGTAALE 108 (244)
T ss_dssp HHTTCSEEEEEEHHHHT-TSCCCH-HHHHHHHHHC--SSEEEEESSCCSHHHHHHHHHTTCSEEEECHHHHH
T ss_pred HHcCCCEEEEEcCcccc-cCCChH-HHHHHHHHhc--CCcEEEECCCCCHHHHHHHHHcCCCEEEECchHhh
Confidence 67899999987522211 122334 7888888877 79999999999999999999999999999997754
|
| >1mxs_A KDPG aldolase; 2-keto-3-deoxy-6-phosphogluconate aldolase, sulfate, beta-BA lyase; 2.20A {Pseudomonas putida} SCOP: c.1.10.1 | Back alignment and structure |
|---|
Probab=97.46 E-value=0.0012 Score=59.80 Aligned_cols=87 Identities=15% Similarity=0.111 Sum_probs=62.5
Q ss_pred CCHHHHHHHHHhcCCCEEEEeccCHHH----HHcCCcEEEEcCCCccCCCCCcc-hHHHHHHHHHHcCCCceEEEecCCC
Q 017781 212 LSWKDVKWLQTITKLPILVKGVLTAED----VQAGAAGIIVSNHGARQLDYVPA-TIMALEEVVKATQGRIPVFLDGGVR 286 (366)
Q Consensus 212 ~~~~~i~~lr~~~~~pv~vK~v~~~~d----~~aGad~I~vs~~gg~~~~~~~~-~~~~l~~i~~~~~~~i~vi~~GGI~ 286 (366)
.+.+.++. ++..+.|++. |+.|+++ .++|+|+|.+.- . ... ..+.|.+++..++ ++|+++.|||
T Consensus 107 ~d~~v~~~-~~~~g~~~i~-G~~t~~e~~~A~~~Gad~vk~FP--a-----~~~~G~~~lk~i~~~~~-~ipvvaiGGI- 175 (225)
T 1mxs_A 107 ITEDILEA-GVDSEIPLLP-GISTPSEIMMGYALGYRRFKLFP--A-----EISGGVAAIKAFGGPFG-DIRFCPTGGV- 175 (225)
T ss_dssp CCHHHHHH-HHHCSSCEEC-EECSHHHHHHHHTTTCCEEEETT--H-----HHHTHHHHHHHHHTTTT-TCEEEEBSSC-
T ss_pred CCHHHHHH-HHHhCCCEEE-eeCCHHHHHHHHHCCCCEEEEcc--C-----ccccCHHHHHHHHhhCC-CCeEEEECCC-
Confidence 34444444 4447888776 5888877 888999998832 1 111 2456676666553 7999999999
Q ss_pred CHHHHHHHHH-hCcCEEEecHHHHH
Q 017781 287 RGTDVFKALA-LGASGIFIGRPVVY 310 (366)
Q Consensus 287 ~~~dv~kala-lGAd~V~igr~~l~ 310 (366)
+.+.+...++ .||++|. |+.++.
T Consensus 176 ~~~N~~~~l~~~Ga~~v~-gSai~~ 199 (225)
T 1mxs_A 176 NPANVRNYMALPNVMCVG-TTWMLD 199 (225)
T ss_dssp CTTTHHHHHHSTTBCCEE-ECTTSC
T ss_pred CHHHHHHHHhccCCEEEE-EchhcC
Confidence 5788999999 6999999 887754
|
| >3ajx_A 3-hexulose-6-phosphate synthase; HPS, OMPDC suprafamily, LYA; 1.60A {Mycobacterium gastri} | Back alignment and structure |
|---|
Probab=97.44 E-value=0.00099 Score=58.90 Aligned_cols=67 Identities=19% Similarity=0.142 Sum_probs=44.4
Q ss_pred HHcCCcEEEEc-CCCccCCCCCcchHHHHHHHHHHcCCCceEEEecCCCCHHHHHHHHHhCcCEEEecHHHHH
Q 017781 239 VQAGAAGIIVS-NHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFIGRPVVY 310 (366)
Q Consensus 239 ~~aGad~I~vs-~~gg~~~~~~~~~~~~l~~i~~~~~~~i~vi~~GGI~~~~dv~kalalGAd~V~igr~~l~ 310 (366)
.+.|+|.|.+. +..+......+.. +.++++... ++|++++|||+ .+.+.++++.|||+|.+||+++.
T Consensus 124 ~~~g~d~v~~~~~~~~~~~g~~~~~-~~i~~~~~~---~~pi~v~GGI~-~~~~~~~~~aGad~vvvGsaI~~ 191 (207)
T 3ajx_A 124 RALGAKFVEMHAGLDEQAKPGFDLN-GLLAAGEKA---RVPFSVAGGVK-VATIPAVQKAGAEVAVAGGAIYG 191 (207)
T ss_dssp HHTTCSEEEEECCHHHHTSTTCCTH-HHHHHHHHH---TSCEEEESSCC-GGGHHHHHHTTCSEEEESHHHHT
T ss_pred HHhCCCEEEEEecccccccCCCchH-HHHHHhhCC---CCCEEEECCcC-HHHHHHHHHcCCCEEEEeeeccC
Confidence 56799998443 2111000011122 444444432 68999999998 78899999999999999999864
|
| >1ypf_A GMP reductase; GUAC, purines, pyrimidines, nucleosides, nucleotides, nucleo nucleoside interconversions, spine, structural genomics; 1.80A {Bacillus anthracis} PDB: 2a1y_A* | Back alignment and structure |
|---|
Probab=97.39 E-value=0.0004 Score=66.69 Aligned_cols=130 Identities=14% Similarity=0.144 Sum_probs=84.2
Q ss_pred CCceecCCCCCCCHHHHhccCCCceEEEeeecCCHHHHHHHHHHHHHcCCCEEEEecCCCCCcchhHHHhhhcCCCCccc
Q 017781 101 GTIMTLSSWSTSSVEEVASTGPGIRFFQLYVYKDRNVVAQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLT 180 (366)
Q Consensus 101 G~~~~vs~~~~~~~e~i~~~~~~~~~~Qly~~~d~~~~~~~l~ra~~~G~~ai~vtvd~p~~g~r~~d~~~~~~~p~~~~ 180 (366)
..|+++++++..+.++++.......|+|+|...+++.+.+.++++++.|+. +++|. |.+
T Consensus 46 ~~Pi~~a~mag~s~~~la~a~~~~gg~g~~~~~~~~~~~~~i~~~~~~g~~---v~v~~---g~~--------------- 104 (336)
T 1ypf_A 46 KLPVVPANMQTIIDERIATYLAENNYFYIMHRFQPEKRISFIRDMQSRGLI---ASISV---GVK--------------- 104 (336)
T ss_dssp SSSEEECSSTTTCCHHHHHHHHHTTCCCCCCCSSGGGHHHHHHHHHHTTCC---CEEEE---CCS---------------
T ss_pred cCcEEECCCCCCChHHHHHHHHhCCCEEEecCCCCHHHHHHHHHHHhcCCe---EEEeC---CCC---------------
Confidence 357888888888888886532245789999888888888888888876541 12221 000
Q ss_pred cccccccccCCCccccchhhHHHhhhccCCCCCHHHHHHHHHhcCCCEEEEeccCHHHHHcC--CcEEEEcCCCccCCCC
Q 017781 181 LKNFQGLDLGKMDEANDSGLAAYVAGQIDRSLSWKDVKWLQTITKLPILVKGVLTAEDVQAG--AAGIIVSNHGARQLDY 258 (366)
Q Consensus 181 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~i~~lr~~~~~pv~vK~v~~~~d~~aG--ad~I~vs~~gg~~~~~ 258 (366)
.+.++.++.. .++| +|+|.+....| .
T Consensus 105 ---------------------------------~~~~~~a~~~---------------~~~g~~~~~i~i~~~~G----~ 132 (336)
T 1ypf_A 105 ---------------------------------EDEYEFVQQL---------------AAEHLTPEYITIDIAHG----H 132 (336)
T ss_dssp ---------------------------------HHHHHHHHHH---------------HHTTCCCSEEEEECSSC----C
T ss_pred ---------------------------------HHHHHHHHHH---------------HhcCCCCCEEEEECCCC----C
Confidence 0111111111 3455 77776633111 1
Q ss_pred CcchHHHHHHHHHHcCCCceEEEecCCCCHHHHHHHHHhCcCEEEec
Q 017781 259 VPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFIG 305 (366)
Q Consensus 259 ~~~~~~~l~~i~~~~~~~i~vi~~GGI~~~~dv~kalalGAd~V~ig 305 (366)
....++.+.++++.. ..+++..|.|.+.+++.++..+|||+|.++
T Consensus 133 ~~~~~~~i~~lr~~~--~~~~vi~G~v~s~e~A~~a~~aGad~Ivvs 177 (336)
T 1ypf_A 133 SNAVINMIQHIKKHL--PESFVIAGNVGTPEAVRELENAGADATKVG 177 (336)
T ss_dssp SHHHHHHHHHHHHHC--TTSEEEEEEECSHHHHHHHHHHTCSEEEEC
T ss_pred cHHHHHHHHHHHHhC--CCCEEEECCcCCHHHHHHHHHcCCCEEEEe
Confidence 234678888888887 334445577999999999999999999993
|
| >1vzw_A Phosphoribosyl isomerase A; histidine biosynthesis, tryptophan biosynthesis; 1.8A {Streptomyces coelicolor} SCOP: c.1.2.1 PDB: 2vep_A 2x30_A | Back alignment and structure |
|---|
Probab=97.39 E-value=0.0005 Score=62.50 Aligned_cols=68 Identities=25% Similarity=0.310 Sum_probs=53.9
Q ss_pred HHcCCcEEEEcCCCccCCCCCcchHHHHHHHHHHcCCCceEEEecCCCCHHHHHHHHHhCcCEEEecHHHHH
Q 017781 239 VQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFIGRPVVY 310 (366)
Q Consensus 239 ~~aGad~I~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~i~vi~~GGI~~~~dv~kalalGAd~V~igr~~l~ 310 (366)
.++|+|.|.+..-.+.. ...... +.+.++++.. ++|+++.|||++++++.+++.+|||.|.+|+..+.
T Consensus 42 ~~~Gad~i~v~~~d~~~-~~~~~~-~~i~~i~~~~--~ipv~v~ggI~~~~~~~~~l~~Gad~V~lg~~~l~ 109 (244)
T 1vzw_A 42 QRSGAEWLHLVDLDAAF-GTGDNR-ALIAEVAQAM--DIKVELSGGIRDDDTLAAALATGCTRVNLGTAALE 109 (244)
T ss_dssp HHTTCSEEEEEEHHHHH-TSCCCH-HHHHHHHHHC--SSEEEEESSCCSHHHHHHHHHTTCSEEEECHHHHH
T ss_pred HHcCCCEEEEecCchhh-cCCChH-HHHHHHHHhc--CCcEEEECCcCCHHHHHHHHHcCCCEEEECchHhh
Confidence 67899999987532211 122345 7788888877 79999999999999999999999999999997653
|
| >1qap_A Quinolinic acid phosphoribosyltransferase; glycosyltransferase, NAD biosynthesis; HET: NTM; 2.80A {Salmonella typhimurium} SCOP: c.1.17.1 d.41.2.1 | Back alignment and structure |
|---|
Probab=97.38 E-value=0.0011 Score=62.56 Aligned_cols=82 Identities=22% Similarity=0.251 Sum_probs=64.8
Q ss_pred HHHHHHHHhcCC-CEEEEeccCHHH----HHcCCcEEEEcCCCccCCCCCcchHHHHHHHHHHcCCCceEEEecCCCCHH
Q 017781 215 KDVKWLQTITKL-PILVKGVLTAED----VQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGT 289 (366)
Q Consensus 215 ~~i~~lr~~~~~-pv~vK~v~~~~d----~~aGad~I~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~i~vi~~GGI~~~~ 289 (366)
+.++.+|+..+- ++++ .+-+.++ .++|+|+|-++| .+.+.+.++++.+.++++|.++||| +.+
T Consensus 197 ~ai~~~r~~~~~~kI~v-ev~tlee~~eA~~aGaD~I~ld~----------~~~e~l~~~v~~~~~~~~I~ASGGI-t~~ 264 (296)
T 1qap_A 197 QAVEKAFWLHPDVPVEV-EVENLDELDDALKAGADIIMLDN----------FNTDQMREAVKRVNGQARLEVSGNV-TAE 264 (296)
T ss_dssp HHHHHHHHHSTTSCEEE-EESSHHHHHHHHHTTCSEEEESS----------CCHHHHHHHHHTTCTTCCEEECCCS-CHH
T ss_pred HHHHHHHHhCCCCcEEE-EeCCHHHHHHHHHcCCCEEEECC----------CCHHHHHHHHHHhCCCCeEEEECCC-CHH
Confidence 458888887643 4444 4556665 889999999977 2446667777777668999999999 999
Q ss_pred HHHHHHHhCcCEEEecHHH
Q 017781 290 DVFKALALGASGIFIGRPV 308 (366)
Q Consensus 290 dv~kalalGAd~V~igr~~ 308 (366)
.+.+..+.|+|.+.+|+..
T Consensus 265 ~i~~~a~~GvD~isvGsli 283 (296)
T 1qap_A 265 TLREFAETGVDFISVGALT 283 (296)
T ss_dssp HHHHHHHTTCSEEECSHHH
T ss_pred HHHHHHHcCCCEEEEeHHH
Confidence 9999999999999999843
|
| >3vzx_A Heptaprenylglyceryl phosphate synthase; biosynthesis, prenyltransferases, enzyme catalysis, transfer; 1.54A {Bacillus subtilis} PDB: 3vzy_A* 3vzz_A* 3w00_A* 1viz_A | Back alignment and structure |
|---|
Probab=97.38 E-value=0.00084 Score=60.91 Aligned_cols=75 Identities=12% Similarity=0.137 Sum_probs=55.3
Q ss_pred cCCcEEEEcCCCccCCCCCcchHHHHHHHHHHcCCCceEEEecCCCCHHHHHHHHHhCcCEEEecHHHHHHhhhcCHHHH
Q 017781 241 AGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFIGRPVVYSLAAEGEKGV 320 (366)
Q Consensus 241 aGad~I~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~i~vi~~GGI~~~~dv~kalalGAd~V~igr~~l~~l~~~G~~gv 320 (366)
.|.+.|.+.. .|.. ...+.+.++++.+. ++||++-|||++++++.+++ .|||.|.+|+++.. .++-+
T Consensus 152 ~g~~~VYld~-sG~~-----~~~~~i~~i~~~~~-~~Pv~vGGGI~t~e~a~~~~-~gAD~VVVGSa~v~-----~p~~~ 218 (228)
T 3vzx_A 152 LQLPIFYLEY-SGVL-----GDIEAVKKTKAVLE-TSTLFYGGGIKDAETAKQYA-EHADVIVVGNAVYE-----DFDRA 218 (228)
T ss_dssp TTCSEEEEEC-TTSC-----CCHHHHHHHHHHCS-SSEEEEESSCCSHHHHHHHH-TTCSEEEECTHHHH-----CHHHH
T ss_pred cCCCEEEecC-CCCc-----CCHHHHHHHHHhcC-CCCEEEeCCCCCHHHHHHHH-hCCCEEEEChHHhc-----CHHHH
Confidence 4567777766 3321 25788888888762 58999999999999999887 79999999999875 34444
Q ss_pred HHHHHHHH
Q 017781 321 RRVLEMLR 328 (366)
Q Consensus 321 ~~~~~~l~ 328 (366)
.++++.++
T Consensus 219 ~~~v~a~~ 226 (228)
T 3vzx_A 219 LKTVAAVK 226 (228)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHh
Confidence 44444443
|
| >1qo2_A Molecule: N-((5-phosphoribosyl)-formimino)-5-aminoimidazol- 4-carboxamid ribonucleotid...; isomerase, histidine biosynthesis; 1.85A {Thermotoga maritima} SCOP: c.1.2.1 PDB: 2cff_A 2w79_A | Back alignment and structure |
|---|
Probab=97.38 E-value=0.00011 Score=66.95 Aligned_cols=68 Identities=18% Similarity=0.170 Sum_probs=52.4
Q ss_pred HHcCCcEEEEcCCCccCCCCCcchHHHHHHHHHHcCCCceEEEecCCCCHHHHHHHHHhCcCEEEecHHHHH
Q 017781 239 VQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFIGRPVVY 310 (366)
Q Consensus 239 ~~aGad~I~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~i~vi~~GGI~~~~dv~kalalGAd~V~igr~~l~ 310 (366)
.++|+|.|.++...+.. ......++.+.+++ .+ .+||++.|||++.+++.+++++|||+|++|+.++.
T Consensus 40 ~~~Gad~i~v~d~~~~~-~~~~~~~~~i~~i~-~~--~ipvi~~Ggi~~~~~~~~~~~~Gad~V~lg~~~l~ 107 (241)
T 1qo2_A 40 IEEGFTLIHVVDLSNAI-ENSGENLPVLEKLS-EF--AEHIQIGGGIRSLDYAEKLRKLGYRRQIVSSKVLE 107 (241)
T ss_dssp HHTTCCCEEEEEHHHHH-HCCCTTHHHHHHGG-GG--GGGEEEESSCCSHHHHHHHHHTTCCEEEECHHHHH
T ss_pred HHcCCCEEEEecccccc-cCCchhHHHHHHHH-hc--CCcEEEECCCCCHHHHHHHHHCCCCEEEECchHhh
Confidence 56799999987521100 01234577777777 55 79999999999999999999999999999998764
|
| >2qr6_A IMP dehydrogenase/GMP reductase; NP_599840.1, G reductase domain, structural genomics, joint center for STR genomics, JCSG; HET: MSE; 1.50A {Corynebacterium glutamicum atcc 13032} | Back alignment and structure |
|---|
Probab=97.35 E-value=0.00043 Score=67.83 Aligned_cols=94 Identities=20% Similarity=0.308 Sum_probs=65.5
Q ss_pred CCCCCHHHHHHHHHhcCCCEEEEecc-CHHH-----HHcCCcEEEEcCCCccCCCCCc-chHHHHHHHHHHcCCCceEEE
Q 017781 209 DRSLSWKDVKWLQTITKLPILVKGVL-TAED-----VQAGAAGIIVSNHGARQLDYVP-ATIMALEEVVKATQGRIPVFL 281 (366)
Q Consensus 209 d~~~~~~~i~~lr~~~~~pv~vK~v~-~~~d-----~~aGad~I~vs~~gg~~~~~~~-~~~~~l~~i~~~~~~~i~vi~ 281 (366)
++....+.++++++. +.|++++... ...+ .++|+|++.+++....+...++ ..+..+.++++.. ++||++
T Consensus 140 d~~~~~~~i~~~~~~-g~~v~~~v~~~~~~e~a~~~~~agad~i~i~~~~~~~~~~~~~~~~~~i~~l~~~~--~~pvi~ 216 (393)
T 2qr6_A 140 DTELLSERIAQVRDS-GEIVAVRVSPQNVREIAPIVIKAGADLLVIQGTLISAEHVNTGGEALNLKEFIGSL--DVPVIA 216 (393)
T ss_dssp CHHHHHHHHHHHHHT-TSCCEEEECTTTHHHHHHHHHHTTCSEEEEECSSCCSSCCCC-----CHHHHHHHC--SSCEEE
T ss_pred CHHHHHHHHHHHhhc-CCeEEEEeCCccHHHHHHHHHHCCCCEEEEeCCccccccCCCcccHHHHHHHHHhc--CCCEEE
Confidence 333344567888875 8899998753 2332 6789999988643211111122 1556677888877 799999
Q ss_pred ecCCCCHHHHHHHHHhCcCEEEecH
Q 017781 282 DGGVRRGTDVFKALALGASGIFIGR 306 (366)
Q Consensus 282 ~GGI~~~~dv~kalalGAd~V~igr 306 (366)
|||.+++|+.+++.+|||+|.+|+
T Consensus 217 -ggi~t~e~a~~~~~~Gad~i~vg~ 240 (393)
T 2qr6_A 217 -GGVNDYTTALHMMRTGAVGIIVGG 240 (393)
T ss_dssp -ECCCSHHHHHHHHTTTCSEEEESC
T ss_pred -CCcCCHHHHHHHHHcCCCEEEECC
Confidence 999999999999999999999986
|
| >3kts_A Glycerol uptake operon antiterminator regulatory; structural genomics, PSI-2, protein structur initiative; HET: UNL; 2.75A {Listeria monocytogenes str} | Back alignment and structure |
|---|
Probab=97.34 E-value=0.00013 Score=64.34 Aligned_cols=142 Identities=14% Similarity=0.142 Sum_probs=93.5
Q ss_pred ceEEEeeecCCHHHHHHHHHHHHHcCCCEEEEecCCCCCcchhHHHhhhcCCCCccccccccccccCCCccccchhhHHH
Q 017781 124 IRFFQLYVYKDRNVVAQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLTLKNFQGLDLGKMDEANDSGLAAY 203 (366)
Q Consensus 124 ~~~~Qly~~~d~~~~~~~l~ra~~~G~~ai~vtvd~p~~g~r~~d~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~ 203 (366)
..+|=++ .+-..+.+.+++++++|- -++|++|... |+. .....-.+
T Consensus 31 ~~ifll~--g~i~~l~~~v~~lk~~~K-~v~Vh~Dli~----------Gls---------------------~d~~ai~f 76 (192)
T 3kts_A 31 TYMVMLE--THVAQLKALVKYAQAGGK-KVLLHADLVN----------GLK---------------------NDDYAIDF 76 (192)
T ss_dssp CEEEECS--EETTTHHHHHHHHHHTTC-EEEEEGGGEE----------TCC---------------------CSHHHHHH
T ss_pred CEEEEec--CcHHHHHHHHHHHHHcCC-eEEEecCchh----------ccC---------------------CcHHHHHH
Confidence 4555555 355667888999999985 5556887431 211 00112233
Q ss_pred hhhccCCCC----CHHHHHHHHHhcCCCEEEEecc----CHHH-----HHcCCcEEEEcCCCccCCCCCcchHHHHHHHH
Q 017781 204 VAGQIDRSL----SWKDVKWLQTITKLPILVKGVL----TAED-----VQAGAAGIIVSNHGARQLDYVPATIMALEEVV 270 (366)
Q Consensus 204 ~~~~~d~~~----~~~~i~~lr~~~~~pv~vK~v~----~~~d-----~~aGad~I~vs~~gg~~~~~~~~~~~~l~~i~ 270 (366)
+.....++. -...++..|+. ++..+-+.-+ +.+. .+...|+|-+-- |+.+ ..+.+++
T Consensus 77 L~~~~~pdGIIsTk~~~i~~Ak~~-gL~tIqR~FliDS~al~~~~~~i~~~~PD~iEiLP--------Gi~p-~iI~~i~ 146 (192)
T 3kts_A 77 LCTEICPDGIISTRGNAIMKAKQH-KMLAIQRLFMIDSSAYNKGVALIQKVQPDCIELLP--------GIIP-EQVQKMT 146 (192)
T ss_dssp HHHTTCCSEEEESCHHHHHHHHHT-TCEEEEEEECCSHHHHHHHHHHHHHHCCSEEEEEC--------TTCH-HHHHHHH
T ss_pred HHhCCCCCEEEeCcHHHHHHHHHC-CCeEEEEEEEEEcchHHHHHHHHhhcCCCEEEECC--------chhH-HHHHHHH
Confidence 333223322 23457777664 7666666431 2122 667789887531 2222 6888888
Q ss_pred HHcCCCceEEEecCCCCHHHHHHHHHhCcCEEEecHHHHHH
Q 017781 271 KATQGRIPVFLDGGVRRGTDVFKALALGASGIFIGRPVVYS 311 (366)
Q Consensus 271 ~~~~~~i~vi~~GGI~~~~dv~kalalGAd~V~igr~~l~~ 311 (366)
+.+ ++|||+.|+|++.+|+.+|+..||++|..++..||.
T Consensus 147 ~~~--~~PiIaGGlI~~~edv~~al~aGA~aVsTs~~~LW~ 185 (192)
T 3kts_A 147 QKL--HIPVIAGGLIETSEQVNQVIASGAIAVTTSNKHLWE 185 (192)
T ss_dssp HHH--CCCEEEESSCCSHHHHHHHHTTTEEEEEECCGGGGT
T ss_pred Hhc--CCCEEEECCcCCHHHHHHHHHcCCeEEEeCCHHHhC
Confidence 888 899999999999999999999999999999999984
|
| >2w6r_A Imidazole glycerol phosphate synthase subunit HISF; lyase, fusion protein, cobalamin, precorrin, novel fold, VIT; 2.10A {Thermotoga maritima} | Back alignment and structure |
|---|
Probab=97.32 E-value=0.00022 Score=65.77 Aligned_cols=68 Identities=16% Similarity=0.201 Sum_probs=52.8
Q ss_pred HHcCCcEEEEcCCCccCCCCCcchHHHHHHHHHHcCCCceEEEecCCCCHHHHHHHHHhCcCEEEecHHHH
Q 017781 239 VQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFIGRPVV 309 (366)
Q Consensus 239 ~~aGad~I~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~i~vi~~GGI~~~~dv~kalalGAd~V~igr~~l 309 (366)
.++|+|.|.++.-.+... .....++.+.++++.+ ++||++.|||++..|+.+++.+|||+|.+|+.++
T Consensus 40 ~~~Ga~~i~v~d~~~~~~-~~g~~~~~i~~i~~~~--~iPvi~~ggi~~~~~i~~~~~~Gad~v~lg~~~~ 107 (266)
T 2w6r_A 40 EKRGAGEILLTSIDRDGT-KSGYDTEMIRFVRPLT--TLPIIASGGAGKMEHFLEAFLAGADKALAASVFH 107 (266)
T ss_dssp HHHTCSEEEEEETTTSSC-SSCCCHHHHHHHGGGC--CSCEEEESCCCSTHHHHHHHHHTCSEEECCCCC-
T ss_pred HHCCCCEEEEEecCcccC-CCcccHHHHHHHHHhc--CCCEEEECCCCCHHHHHHHHHcCCcHhhhhHHHH
Confidence 567999999865221111 1123577888887766 7999999999999999999999999999999776
|
| >3s1x_A Probable transaldolase; alpha-beta barrel, conformational selection, domain swapping transferase; HET: I22; 1.65A {Thermoplasma acidophilum} PDB: 3s1u_A* 3s1v_A* 3s0c_A* 3s1w_A* | Back alignment and structure |
|---|
Probab=97.31 E-value=0.012 Score=53.05 Aligned_cols=108 Identities=16% Similarity=0.182 Sum_probs=75.0
Q ss_pred HHHHHHHhcCCCEEEEeccCHHH----HHcCCcEEEEcCCCccCCCCCcchHHHHHHHHHHc---CCCceEEEecCCCCH
Q 017781 216 DVKWLQTITKLPILVKGVLTAED----VQAGAAGIIVSNHGARQLDYVPATIMALEEVVKAT---QGRIPVFLDGGVRRG 288 (366)
Q Consensus 216 ~i~~lr~~~~~pv~vK~v~~~~d----~~aGad~I~vs~~gg~~~~~~~~~~~~l~~i~~~~---~~~i~vi~~GGI~~~ 288 (366)
.++.+.+. ++++-+-.+.+... .++||+.|.. .-||-.|++.+....+.++.+.. +.+..|++.+ +|+.
T Consensus 96 A~~~L~~~-GI~vn~TlifS~~QA~~Aa~AGa~yISP--fvgRi~d~g~dG~~~v~~i~~~~~~~~~~T~IlaAS-~Rn~ 171 (223)
T 3s1x_A 96 AIKTLSSE-HINTNCTLVFNPIQALLAAKAGVTYVSP--FVGRLDDIGEDGMQIIDMIRTIFNNYIIKTQILVAS-IRNP 171 (223)
T ss_dssp HHHHHHHT-TCCEEEEEECSHHHHHHHHHTTCSEEEE--BSHHHHHTTSCTHHHHHHHHHHHHHTTCCSEEEEBS-CCSH
T ss_pred HHHHHHHC-CCcEEEEEeCCHHHHHHHHHcCCeEEEe--ecchHhhcCCCHHHHHHHHHHHHHHcCCCCEEEEEe-CCCH
Confidence 34555443 89999999999887 8999998754 44554455555566666665543 3355666655 9999
Q ss_pred HHHHHHHHhCcCEEEecHHHHHHhhhcC--HHHHHHHHHHH
Q 017781 289 TDVFKALALGASGIFIGRPVVYSLAAEG--EKGVRRVLEML 327 (366)
Q Consensus 289 ~dv~kalalGAd~V~igr~~l~~l~~~G--~~gv~~~~~~l 327 (366)
.++.++..+|||.+-+.-.++..+...- ..|++++.+.|
T Consensus 172 ~~v~~aa~~G~d~~Tip~~vl~~l~~hpltd~~~~~F~~Dw 212 (223)
T 3s1x_A 172 IHVLRSAVIGADVVTVPFNVLKSLMKHPKTDEGLAKFLEDW 212 (223)
T ss_dssp HHHHHHHHHTCSEEEECHHHHHHTTCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCCEEEeCHHHHHHHHcCCcHHHHHHHHHHHH
Confidence 9999999999999999988887764321 24555554444
|
| >1q6o_A Humps, 3-keto-L-gulonate 6-phosphate decarboxylase, D-; beta barrel, lyase; HET: LG6; 1.20A {Escherichia coli} SCOP: c.1.2.3 PDB: 1kw1_A* 1q6l_A* 1kv8_A* 1q6q_A* 1q6r_A* 1xbv_A* 1so5_A* 1so4_A* 1xby_A* 1so3_A* 1so6_A* 1xbz_A* 1xbx_A* | Back alignment and structure |
|---|
Probab=97.31 E-value=0.0036 Score=55.91 Aligned_cols=47 Identities=13% Similarity=0.129 Sum_probs=38.2
Q ss_pred HHHHHHHHHHcCCCceEEEecCCCCHHHHHHHHHhCcCEEEecHHHHH
Q 017781 263 IMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFIGRPVVY 310 (366)
Q Consensus 263 ~~~l~~i~~~~~~~i~vi~~GGI~~~~dv~kalalGAd~V~igr~~l~ 310 (366)
.+.+.++++..+.++||+++|||+ ++.+.+++.+|||.+.+||++..
T Consensus 150 ~~~i~~lr~~~~~~~~i~v~GGI~-~~~~~~~~~aGad~ivvG~~I~~ 196 (216)
T 1q6o_A 150 EADITAIKRLSDMGFKVTVTGGLA-LEDLPLFKGIPIHVFIAGRSIRD 196 (216)
T ss_dssp HHHHHHHHHHHHTTCEEEEESSCC-GGGGGGGTTSCCSEEEESHHHHT
T ss_pred HHHHHHHHHhcCCCCcEEEECCcC-hhhHHHHHHcCCCEEEEeehhcC
Confidence 455666666554478899999998 77788999999999999999864
|
| >2b7n_A Probable nicotinate-nucleotide pyrophosphorylase; quinolinate phosphoribosyltransferase, quinolinic acid, HELI pylori, transferase; HET: NTM; 2.30A {Helicobacter pylori} PDB: 2b7p_A* 2b7q_A* | Back alignment and structure |
|---|
Probab=97.23 E-value=0.00061 Score=63.60 Aligned_cols=84 Identities=13% Similarity=0.119 Sum_probs=63.2
Q ss_pred HHHHHHHHHhcC--CCEEEEeccCHHH----HHcCCcEEEEcCCCccCCCCCcchHHHHHHHHHHcC---CCceEEEecC
Q 017781 214 WKDVKWLQTITK--LPILVKGVLTAED----VQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQ---GRIPVFLDGG 284 (366)
Q Consensus 214 ~~~i~~lr~~~~--~pv~vK~v~~~~d----~~aGad~I~vs~~gg~~~~~~~~~~~~l~~i~~~~~---~~i~vi~~GG 284 (366)
.+.++.+|+..+ .++.+ .+.+.++ .++|+|+|.+++. + .+.+.++++.++ .+++|.++||
T Consensus 169 ~~ai~~~r~~~~~~~~i~v-ev~tlee~~~A~~aGaD~I~ld~~-------~---~~~l~~~v~~l~~~~~~~~i~AsGG 237 (273)
T 2b7n_A 169 KSFLTHARKNLPFTAKIEI-ECESFEEAKNAMNAGADIVMCDNL-------S---VLETKEIAAYRDAHYPFVLLEASGN 237 (273)
T ss_dssp HHHHHHHGGGSCTTCCEEE-EESSHHHHHHHHHHTCSEEEEETC-------C---HHHHHHHHHHHHHHCTTCEEEEESS
T ss_pred HHHHHHHHHhCCCCceEEE-EcCCHHHHHHHHHcCCCEEEECCC-------C---HHHHHHHHHHhhccCCCcEEEEECC
Confidence 356888888875 35555 6667766 7899999999872 2 244444444442 2599999999
Q ss_pred CCCHHHHHHHHHhCcCEEEecHHHH
Q 017781 285 VRRGTDVFKALALGASGIFIGRPVV 309 (366)
Q Consensus 285 I~~~~dv~kalalGAd~V~igr~~l 309 (366)
| +.+.+.+.++.|||.+.+|+.+.
T Consensus 238 I-~~~ni~~~~~aGaD~i~vGs~i~ 261 (273)
T 2b7n_A 238 I-SLESINAYAKSGVDAISVGALIH 261 (273)
T ss_dssp C-CTTTHHHHHTTTCSEEECTHHHH
T ss_pred C-CHHHHHHHHHcCCcEEEEcHHhc
Confidence 9 89999999999999999998754
|
| >3r8r_A Transaldolase; pentose phosphate pathway, schiff bases; 1.90A {Bacillus subtilis} | Back alignment and structure |
|---|
Probab=97.19 E-value=0.014 Score=52.15 Aligned_cols=107 Identities=20% Similarity=0.157 Sum_probs=74.7
Q ss_pred HHHHHHHhcCCCEEEEeccCHHH----HHcCCcEEEEcCCCccCCCCCcchHHHHHHHHHHc---CCCceEEEecCCCCH
Q 017781 216 DVKWLQTITKLPILVKGVLTAED----VQAGAAGIIVSNHGARQLDYVPATIMALEEVVKAT---QGRIPVFLDGGVRRG 288 (366)
Q Consensus 216 ~i~~lr~~~~~pv~vK~v~~~~d----~~aGad~I~vs~~gg~~~~~~~~~~~~l~~i~~~~---~~~i~vi~~GGI~~~ 288 (366)
.++.+.+. ++++-+-.+.+... .++||+.|.. .-||-.|++.+....+.++.+.. +.+..|++.+ +|+.
T Consensus 94 A~~~L~~~-GI~vn~TlifS~~Qa~~Aa~AGa~yISP--fvgRi~d~~~dG~~~v~~i~~~~~~~~~~t~ilaAS-~R~~ 169 (212)
T 3r8r_A 94 AVRALTDL-GIKTNVTLIFNANQALLAARAGATYVSP--FLGRLDDIGHNGLDLISEVKQIFDIHGLDTQIIAAS-IRHP 169 (212)
T ss_dssp HHHHHHHT-TCCEEEEEECSHHHHHHHHHHTCSEEEE--BHHHHHHTTSCHHHHHHHHHHHHHHHTCCCEEEEBS-CCSH
T ss_pred HHHHHHHC-CCcEEEEEeCCHHHHHHHHHcCCeEEEe--ccchhhhcCCChHHHHHHHHHHHHHcCCCCEEEEec-CCCH
Confidence 34455443 89999999999887 8999998754 34554556666666666666544 3355666655 9999
Q ss_pred HHHHHHHHhCcCEEEecHHHHHHhhhcC--HHHHHHHHHH
Q 017781 289 TDVFKALALGASGIFIGRPVVYSLAAEG--EKGVRRVLEM 326 (366)
Q Consensus 289 ~dv~kalalGAd~V~igr~~l~~l~~~G--~~gv~~~~~~ 326 (366)
.++.++..+|||.+-+.-.++..+...- ..|++.+.+.
T Consensus 170 ~~v~~~a~~G~d~~Tip~~vl~~l~~hpltd~~~~~F~~D 209 (212)
T 3r8r_A 170 QHVTEAALRGAHIGTMPLKVIHALTKHPLTDKGIEQFLAD 209 (212)
T ss_dssp HHHHHHHHTTCSEEEECHHHHHHHTCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCCEEEcCHHHHHHHHcCCcHHHHHHHHHHH
Confidence 9999999999999999988887764321 2445544443
|
| >3nvt_A 3-deoxy-D-arabino-heptulosonate 7-phosphate synth; bifunctional 3-deoxy-7-phosphoheptulonate synthase/chorismat listeria monocytogenes EGD-E; 1.95A {Listeria monocytogenes} PDB: 3tfc_A* | Back alignment and structure |
|---|
Probab=97.17 E-value=0.008 Score=58.64 Aligned_cols=202 Identities=23% Similarity=0.274 Sum_probs=112.1
Q ss_pred CCCCccceeEcCcccC---CceEecccccccccCChhhHHHHHHHHHcCCceec-CCCCCCCHHHHhccCCCceEEEeee
Q 017781 56 VSKIDMNTTVLGFKIS---MPIMIAPTAMQKMAHPEGEYATARAASAAGTIMTL-SSWSTSSVEEVASTGPGIRFFQLYV 131 (366)
Q Consensus 56 ~~~vd~st~l~g~~l~---~Pi~iApm~~~~l~~~~~e~~la~aa~~~G~~~~v-s~~~~~~~e~i~~~~~~~~~~Qly~ 131 (366)
...-|+.+++.+..+. .+++++|.+.. ..+.-..++++++++|+.++. .++.+.+ . ++.||
T Consensus 124 ~~~~~t~i~i~~~~iG~~~~~~Iigpcsve---s~e~a~~~a~~~k~aGa~~vk~q~fkprt-------s--~~~f~--- 188 (385)
T 3nvt_A 124 NKKEDTIVTVKGLPIGNGEPVFVFGPCSVE---SYEQVAAVAESIKAKGLKLIRGGAFKPRT-------S--PYDFQ--- 188 (385)
T ss_dssp TCCSCCCEEETTEEETSSSCEEEEECSBCC---CHHHHHHHHHHHHHTTCCEEECBSSCCCS-------S--TTSCC---
T ss_pred cCCCCcEEEECCEEECCCCeEEEEEeCCcC---CHHHHHHHHHHHHHcCCCeEEcccccCCC-------C--hHhhc---
Confidence 4445566666655443 46888888764 233346899999999998875 3343211 1 22233
Q ss_pred cCCHHHHHHHHHHHHHcCCCEEEEecCCCCCcchhHHHhhhcCCCCccccccccccccCCCccccchhhHHHhhhccCCC
Q 017781 132 YKDRNVVAQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLTLKNFQGLDLGKMDEANDSGLAAYVAGQIDRS 211 (366)
Q Consensus 132 ~~d~~~~~~~l~ra~~~G~~ai~vtvd~p~~g~r~~d~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~ 211 (366)
.-..+....+.+.+++.|...+.=-.| + ..-+....+ ++. + .+ +...
T Consensus 189 gl~~egl~~L~~~~~~~Gl~~~te~~d-~----~~~~~l~~~-vd~-l-----------kI---------------gs~~ 235 (385)
T 3nvt_A 189 GLGLEGLKILKRVSDEYGLGVISEIVT-P----ADIEVALDY-VDV-I-----------QI---------------GARN 235 (385)
T ss_dssp CCTHHHHHHHHHHHHHHTCEEEEECCS-G----GGHHHHTTT-CSE-E-----------EE---------------CGGG
T ss_pred CCCHHHHHHHHHHHHHcCCEEEEecCC-H----HHHHHHHhh-CCE-E-----------EE---------------Cccc
Confidence 123455666666777788766532111 1 111111111 110 0 00 0011
Q ss_pred -CCHHHHHHHHHhcCCCEEEEec--cCHHH--------HHcCCcEEEEcCCCccCCCC---CcchHHHHHHHHHHcCCCc
Q 017781 212 -LSWKDVKWLQTITKLPILVKGV--LTAED--------VQAGAAGIIVSNHGARQLDY---VPATIMALEEVVKATQGRI 277 (366)
Q Consensus 212 -~~~~~i~~lr~~~~~pv~vK~v--~~~~d--------~~aGad~I~vs~~gg~~~~~---~~~~~~~l~~i~~~~~~~i 277 (366)
..+..++.+.+ +++||++|.. .+.++ .+.|.+-|++--.|.+.... ....+..++.+++.. .+
T Consensus 236 ~~n~~LL~~~a~-~gkPVilk~G~~~t~~e~~~Ave~i~~~Gn~~i~L~~rG~s~yp~~~~~~ldl~~i~~lk~~~--~l 312 (385)
T 3nvt_A 236 MQNFELLKAAGR-VDKPILLKRGLSATIEEFIGAAEYIMSQGNGKIILCERGIRTYEKATRNTLDISAVPILKKET--HL 312 (385)
T ss_dssp TTCHHHHHHHHT-SSSCEEEECCTTCCHHHHHHHHHHHHTTTCCCEEEEECCBCCSCCSSSSBCCTTHHHHHHHHB--SS
T ss_pred ccCHHHHHHHHc-cCCcEEEecCCCCCHHHHHHHHHHHHHcCCCeEEEEECCCCCCCCCCccccCHHHHHHHHHhc--CC
Confidence 13455666554 6899999965 46666 66787656554434333221 122456677777665 68
Q ss_pred eEEEe----cCCCCH--HHHHHHHHhCcCEEEecHHH
Q 017781 278 PVFLD----GGVRRG--TDVFKALALGASGIFIGRPV 308 (366)
Q Consensus 278 ~vi~~----GGI~~~--~dv~kalalGAd~V~igr~~ 308 (366)
||+.| +|-+.- .-...|+++|||+++|=.-|
T Consensus 313 pV~~D~th~~G~r~~v~~~a~AAvA~GA~gl~iE~H~ 349 (385)
T 3nvt_A 313 PVMVDVTHSTGRKDLLLPCAKAALAIEADGVMAEVHP 349 (385)
T ss_dssp CEEEEHHHHHCCGGGHHHHHHHHHHTTCSEEEEEBCS
T ss_pred CEEEcCCCCCCccchHHHHHHHHHHhCCCEEEEEecC
Confidence 99887 344333 23456889999999998744
|
| >3ceu_A Thiamine phosphate pyrophosphorylase; TIM barrel-like protein, structural genomics, PSI-2, protein structure initiative; 2.30A {Bacteroides thetaiotaomicron vpi-5482} | Back alignment and structure |
|---|
Probab=97.16 E-value=0.001 Score=59.39 Aligned_cols=80 Identities=16% Similarity=0.125 Sum_probs=56.2
Q ss_pred EEeccCHHH---HHcCCcEEEEcCCC--ccCCC-CCcchHHHHHHHHHHcCCCceEEEecCCCCHHHHHHHHHhCcCEEE
Q 017781 230 VKGVLTAED---VQAGAAGIIVSNHG--ARQLD-YVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIF 303 (366)
Q Consensus 230 vK~v~~~~d---~~aGad~I~vs~~g--g~~~~-~~~~~~~~l~~i~~~~~~~i~vi~~GGI~~~~dv~kalalGAd~V~ 303 (366)
.-.+.+.++ .+.|+|+|.++.-. ....+ +.+..++.+.++.+.+..++||++.|||. ++++.+++.+||++|.
T Consensus 92 g~s~~t~~e~~~A~~GaDyv~~g~vf~t~sk~~~~~~~g~~~l~~~~~~~~~~iPviaiGGI~-~~nv~~~~~~Ga~gVa 170 (210)
T 3ceu_A 92 SCSCHSVEEVKNRKHFYDYVFMSPIYDSISKVNYYSTYTAEELREAQKAKIIDSKVMALGGIN-EDNLLEIKDFGFGGAV 170 (210)
T ss_dssp EEEECSHHHHHTTGGGSSEEEECCCC---------CCCCHHHHHHHHHTTCSSTTEEEESSCC-TTTHHHHHHTTCSEEE
T ss_pred EEecCCHHHHHHHhhCCCEEEECCcCCCCCCCCCCCCCCHHHHHHHHHhcCCCCCEEEECCCC-HHHHHHHHHhCCCEEE
Confidence 334567776 23899999976521 11111 12335677777776521279999999997 8999999999999999
Q ss_pred ecHHHHH
Q 017781 304 IGRPVVY 310 (366)
Q Consensus 304 igr~~l~ 310 (366)
+++.+..
T Consensus 171 v~s~i~~ 177 (210)
T 3ceu_A 171 VLGDLWN 177 (210)
T ss_dssp ESHHHHT
T ss_pred EhHHhHc
Confidence 9999854
|
| >4eiv_A Deoxyribose-phosphate aldolase; chemotherapy, brain cysts, bradyzoite, structural genomics, for structural genomics of infectious diseases; 1.37A {Toxoplasma gondii} PDB: 3qyq_A* | Back alignment and structure |
|---|
Probab=97.16 E-value=0.0054 Score=57.28 Aligned_cols=89 Identities=17% Similarity=0.104 Sum_probs=59.0
Q ss_pred CHHHHHHHHHhcCCCEEEEecc-----C-HHH--------HHcCCcEEEEcCCCccCCCCCcchHHHHHHHHHHc-----
Q 017781 213 SWKDVKWLQTITKLPILVKGVL-----T-AED--------VQAGAAGIIVSNHGARQLDYVPATIMALEEVVKAT----- 273 (366)
Q Consensus 213 ~~~~i~~lr~~~~~pv~vK~v~-----~-~~d--------~~aGad~I~vs~~gg~~~~~~~~~~~~l~~i~~~~----- 273 (366)
..++|+.+++..+ +..+|.++ + .+. .++|||+|.-|...+ .+.++.+.+.-+++.+
T Consensus 137 V~~eI~~v~~a~~-~~~lKVIlEt~~Lt~~e~i~~A~~ia~~AGADFVKTSTGf~----~~gAT~edV~lM~~~v~~~~~ 211 (297)
T 4eiv_A 137 IRLLVSEVKKVVG-PKTLKVVLSGGELQGGDIISRAAVAALEGGADFLQTSSGLG----ATHATMFTVHLISIALREYMV 211 (297)
T ss_dssp HHHHHHHHHHHHT-TSEEEEECCSSCCCCHHHHHHHHHHHHHHTCSEEECCCSSS----SCCCCHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHhc-CCceEEEEecccCCcHHHHHHHHHHHHHhCCCEEEcCCCCC----CCCCCHHHHHHHHHHHHHHhc
Confidence 3467888888875 67889762 2 331 799999999876422 1223444333333333
Q ss_pred -----------------CCCceEEEe-cCCCCHHHHHHHHHhCcCEEEecHHHH
Q 017781 274 -----------------QGRIPVFLD-GGVRRGTDVFKALALGASGIFIGRPVV 309 (366)
Q Consensus 274 -----------------~~~i~vi~~-GGI~~~~dv~kalalGAd~V~igr~~l 309 (366)
++++.|=++ ||||+.+|+.+++.+..+ +|..|+
T Consensus 212 ~~~~~~~~~~~~~~~~tg~~vgvKAs~GGIrt~e~A~~~i~~~~e---lG~~wl 262 (297)
T 4eiv_A 212 RENERIRVEGINREGAAVRCIGIKIEVGDVHMAETADFLMQMIFE---NGPRSI 262 (297)
T ss_dssp C------------------CCEEEEECTTCCHHHHHHHHHHHHHH---HCGGGC
T ss_pred cccccccccccccccccCCceeEEecCCCCCCHHHHHHHHHHHHH---hCcccc
Confidence 457999999 999999999999996555 455544
|
| >3cwo_X Beta/alpha-barrel protein based on 1THF and 1TMY; XRAY, CHEY, HISF, half barrel, de novo protein; 3.10A {Thermotoga maritima} PDB: 2lle_A | Back alignment and structure |
|---|
Probab=97.14 E-value=0.0011 Score=58.82 Aligned_cols=46 Identities=17% Similarity=0.298 Sum_probs=41.4
Q ss_pred HHHHHHHHHHcCCCceEEEecCCCCHHHHHHHHHhCcCEEEecHHHHH
Q 017781 263 IMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFIGRPVVY 310 (366)
Q Consensus 263 ~~~l~~i~~~~~~~i~vi~~GGI~~~~dv~kalalGAd~V~igr~~l~ 310 (366)
++.+.++.+.. ++|+|+.||+.+++|+.+++..|||+|++|++++.
T Consensus 163 ~~~i~~~~~~~--~~Pvia~~g~~~~~~~~~~~~~G~~~~~vg~a~~~ 208 (237)
T 3cwo_X 163 TEMIRFVRPLT--TLPIIASGGAGKMEHFLEAFLAGADAALAASVFHF 208 (237)
T ss_dssp HHHHHHHGGGC--CSCEEEESCCCSHHHHHHHHHHTCSEEEESHHHHT
T ss_pred HHHHHHHHHhc--CCCEEecCCCCCHHHHHHHHHcCcHHHhhhHHHHc
Confidence 67777777665 79999999999999999999999999999999865
|
| >1x1o_A Nicotinate-nucleotide pyrophosphorylase; transferase, structural genomics, NPPSFA, national project O structural and functional analyses; 1.90A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=97.12 E-value=0.0032 Score=59.08 Aligned_cols=82 Identities=26% Similarity=0.353 Sum_probs=63.0
Q ss_pred HHHHHHHHhcC--CCEEEEeccCHHH----HHcCCcEEEEcCCCccCCCCCcchHHHHHHHHHHcCCCceEEEecCCCCH
Q 017781 215 KDVKWLQTITK--LPILVKGVLTAED----VQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRG 288 (366)
Q Consensus 215 ~~i~~lr~~~~--~pv~vK~v~~~~d----~~aGad~I~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~i~vi~~GGI~~~ 288 (366)
+.++.+|+..+ .+|.+ .+.+.++ .++|+|+|.+.|- ..+.++++++.+++++|+.++||| +.
T Consensus 184 ~av~~ar~~~~~~~~IgV-ev~t~eea~eA~~aGaD~I~ld~~----------~~~~~k~av~~v~~~ipi~AsGGI-t~ 251 (286)
T 1x1o_A 184 EAVRRAKARAPHYLKVEV-EVRSLEELEEALEAGADLILLDNF----------PLEALREAVRRVGGRVPLEASGNM-TL 251 (286)
T ss_dssp HHHHHHHHHSCTTSCEEE-EESSHHHHHHHHHHTCSEEEEESC----------CHHHHHHHHHHHTTSSCEEEESSC-CH
T ss_pred HHHHHHHHhCCCCCEEEE-EeCCHHHHHHHHHcCCCEEEECCC----------CHHHHHHHHHHhCCCCeEEEEcCC-CH
Confidence 35788888763 45555 6667776 8899999998773 224455666666557999999999 58
Q ss_pred HHHHHHHHhCcCEEEecHHH
Q 017781 289 TDVFKALALGASGIFIGRPV 308 (366)
Q Consensus 289 ~dv~kalalGAd~V~igr~~ 308 (366)
+.+.+..+.|+|.+.+|+.+
T Consensus 252 eni~~~a~tGvD~IsVgs~~ 271 (286)
T 1x1o_A 252 ERAKAAAEAGVDYVSVGALT 271 (286)
T ss_dssp HHHHHHHHHTCSEEECTHHH
T ss_pred HHHHHHHHcCCCEEEEcHHH
Confidence 99999999999999998754
|
| >4gj1_A 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino) methylideneamino] imidazole-4-carboxamide...; HISA, csgid, niaid,; 2.15A {Campylobacter jejuni subsp} | Back alignment and structure |
|---|
Probab=97.10 E-value=0.0028 Score=58.01 Aligned_cols=98 Identities=15% Similarity=0.237 Sum_probs=69.1
Q ss_pred CCHHHHHHHHHhcCCCEEEEec-cCHHH----HHcCCcEEEEcCCC--------------ccC-----------------
Q 017781 212 LSWKDVKWLQTITKLPILVKGV-LTAED----VQAGAAGIIVSNHG--------------ARQ----------------- 255 (366)
Q Consensus 212 ~~~~~i~~lr~~~~~pv~vK~v-~~~~d----~~aGad~I~vs~~g--------------g~~----------------- 255 (366)
...+.++.+.+.+.+|+.+-|. -+.++ .++|||-|++...- |.|
T Consensus 62 ~~~~~i~~i~~~~~~pl~vGGGIrs~e~~~~~l~~GadkVii~t~a~~~p~li~e~~~~~g~q~iv~~iD~~~~~~~~v~ 141 (243)
T 4gj1_A 62 RQFALIEKLAKEVSVNLQVGGGIRSKEEVKALLDCGVKRVVIGSMAIKDATLCLEILKEFGSEAIVLALDTILKEDYVVA 141 (243)
T ss_dssp CCHHHHHHHHHHCCSEEEEESSCCCHHHHHHHHHTTCSEEEECTTTTTCHHHHHHHHHHHCTTTEEEEEEEEESSSEEEC
T ss_pred hHHHHHHHHHHhcCCCeEeccccccHHHHHHHHHcCCCEEEEccccccCCchHHHHHhcccCceEEEEEEEEeCCCCEEE
Confidence 3567788888888889888865 46665 78888888774311 000
Q ss_pred -------------------------------C--CC--CcchHHHHHHHHHHcCCCceEEEecCCCCHHHHHHHHHhCcC
Q 017781 256 -------------------------------L--DY--VPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGAS 300 (366)
Q Consensus 256 -------------------------------~--~~--~~~~~~~l~~i~~~~~~~i~vi~~GGI~~~~dv~kalalGAd 300 (366)
. |+ .-+.++.+..+.+.++ ++|||++||+++.+|+.+ +..+++
T Consensus 142 ~~gw~~~~~~~~~~~~~~~~~~g~~eil~t~Id~DGt~~G~d~~l~~~l~~~~~-~ipviasGGv~~~~Dl~~-l~~~~~ 219 (243)
T 4gj1_A 142 VNAWQEASDKKLMEVLDFYSNKGLKHILCTDISKDGTMQGVNVRLYKLIHEIFP-NICIQASGGVASLKDLEN-LKGICS 219 (243)
T ss_dssp --------CCBHHHHHHHHHTTTCCEEEEEETTC-----CCCHHHHHHHHHHCT-TSEEEEESCCCSHHHHHH-TTTTCS
T ss_pred ecCceecccchHHHHHHHHhhcCCcEEEeeeecccccccCCCHHHHHHHHHhcC-CCCEEEEcCCCCHHHHHH-HHccCc
Confidence 0 11 1135667777776652 699999999999999876 566799
Q ss_pred EEEecHHHHHH
Q 017781 301 GIFIGRPVVYS 311 (366)
Q Consensus 301 ~V~igr~~l~~ 311 (366)
+|.+|++|..+
T Consensus 220 gvivg~Al~~g 230 (243)
T 4gj1_A 220 GVIVGKALLDG 230 (243)
T ss_dssp EEEECHHHHTT
T ss_pred hhehHHHHHCC
Confidence 99999998653
|
| >2czd_A Orotidine 5'-phosphate decarboxylase; pyrimidine biosynthesis, orotidine 5'-phosphate decarboxylas (ompdecase), structural genomics; 1.60A {Pyrococcus horikoshii} SCOP: c.1.2.3 PDB: 2cz5_A 2cze_A* 2czf_A* | Back alignment and structure |
|---|
Probab=97.07 E-value=0.00098 Score=59.37 Aligned_cols=76 Identities=17% Similarity=0.239 Sum_probs=53.6
Q ss_pred HHcCCcEEEEcCCCccCCCCCcchHHHHHHHHHHcCCCceEEEecCCCC-HHHHHHHHHhCcCEEEecHHHHHHhhhcCH
Q 017781 239 VQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRR-GTDVFKALALGASGIFIGRPVVYSLAAEGE 317 (366)
Q Consensus 239 ~~aGad~I~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~i~vi~~GGI~~-~~dv~kalalGAd~V~igr~~l~~l~~~G~ 317 (366)
.+.|+++++++.+ ..+.+.++++..+.+ +++++|||+. +.++.+++++|||.+.+||+++.+ ..
T Consensus 129 ~~~G~~G~~~~~~----------~~~~i~~lr~~~~~~-~~iv~gGI~~~g~~~~~~~~aGad~vvvGr~I~~a---~d- 193 (208)
T 2czd_A 129 NEIEPFGVIAPGT----------RPERIGYIRDRLKEG-IKILAPGIGAQGGKAKDAVKAGADYIIVGRAIYNA---PN- 193 (208)
T ss_dssp HHHCCSEEECCCS----------STHHHHHHHHHSCTT-CEEEECCCCSSTTHHHHHHHHTCSEEEECHHHHTS---SS-
T ss_pred HHhCCcEEEECCC----------ChHHHHHHHHhCCCC-eEEEECCCCCCCCCHHHHHHcCCCEEEEChHHhcC---CC-
Confidence 6779999987653 234456666666433 4679999986 558999999999999999998753 12
Q ss_pred HHHHHHHHHHHHHH
Q 017781 318 KGVRRVLEMLREEF 331 (366)
Q Consensus 318 ~gv~~~~~~l~~el 331 (366)
....++.+++++
T Consensus 194 --p~~~~~~l~~~i 205 (208)
T 2czd_A 194 --PREAAKAIYDEI 205 (208)
T ss_dssp --HHHHHHHHHHHH
T ss_pred --HHHHHHHHHHHH
Confidence 334555565554
|
| >2h6r_A Triosephosphate isomerase; beta-alpha barrel; 2.30A {Methanocaldococcus jannaschii} | Back alignment and structure |
|---|
Probab=97.05 E-value=0.0075 Score=54.21 Aligned_cols=73 Identities=25% Similarity=0.342 Sum_probs=47.1
Q ss_pred HHcCCcEEEEcCCC--ccC---CCCCcchHHHHHHHHHHcCCCceEEEecCCCCHHHHHHHHHhCcCEEEecHHHHHH
Q 017781 239 VQAGAAGIIVSNHG--ARQ---LDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFIGRPVVYS 311 (366)
Q Consensus 239 ~~aGad~I~vs~~g--g~~---~~~~~~~~~~l~~i~~~~~~~i~vi~~GGI~~~~dv~kalalGAd~V~igr~~l~~ 311 (366)
.+.|++.|.+.+.- |+. ....+..++...+..+.+..++||++.|||.++.++.++...|||+|.+|++++.+
T Consensus 128 ~~~~~~~i~~~~~~~iGtG~~~~t~~~~~~~~~~~~ir~~~~~~~ii~ggGI~~~~~~~~~~~~gaDgvlVGsAi~~~ 205 (219)
T 2h6r_A 128 AALSPDCIAVEPPELIGTGIPVSKANPEVVEGTVRAVKEINKDVKVLCGAGISKGEDVKAALDLGAEGVLLASGVVKA 205 (219)
T ss_dssp TTTCCSEEEECCCC--------------CSHHHHHHHHHHCTTCEEEECSSCCSHHHHHHHHTTTCCCEEESHHHHTC
T ss_pred HhCCCCEEEEEeccccccCCCCccCCHHHHHHHHHHHHhccCCCeEEEEeCcCcHHHHHHHhhCCCCEEEEcHHHhCc
Confidence 55677877765532 211 11112212333333333334799999999999999999999999999999999864
|
| >3exr_A RMPD (hexulose-6-phosphate synthase); beta barrel, lyase; 1.70A {Streptococcus mutans} SCOP: c.1.2.3 PDB: 3exs_A* 3ext_A | Back alignment and structure |
|---|
Probab=97.03 E-value=0.004 Score=56.14 Aligned_cols=88 Identities=15% Similarity=0.118 Sum_probs=53.9
Q ss_pred HHcCCcEEEEcCCCccCCCCCcchHHHHHHHHHHcCCCceEEEecCCCCHHHHHHHHHhCcCEEEecHHHHHHhhhcCHH
Q 017781 239 VQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFIGRPVVYSLAAEGEK 318 (366)
Q Consensus 239 ~~aGad~I~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~i~vi~~GGI~~~~dv~kalalGAd~V~igr~~l~~l~~~G~~ 318 (366)
.+.|+|.+++.-....+.++-..+.+.+..+++..+.+++|.++||| +++++.++..+|||.+.+||++..+ ..+
T Consensus 131 ~~~~~~~~v~~~a~~~~~~Gvv~s~~e~~~ir~~~~~~~~i~v~gGI-~~~~~~~~~~aGad~~VvG~~I~~a---~dp- 205 (221)
T 3exr_A 131 LDAGISQAIYHQSRDALLAGETWGEKDLNKVKKLIEMGFRVSVTGGL-SVDTLKLFEGVDVFTFIAGRGITEA---KNP- 205 (221)
T ss_dssp HHTTCCEEEEECCHHHHHHTCCCCHHHHHHHHHHHHHTCEEEEESSC-CGGGGGGGTTCCCSEEEECHHHHTS---SSH-
T ss_pred HcCCHHHHHHHHHHhcCCCccccCHHHHHHHHHhhcCCceEEEECCC-CHHHHHHHHHCCCCEEEECchhhCC---CCH-
Confidence 45577777663211111222233344555666655447889999999 5667888888999999999987532 122
Q ss_pred HHHHHHHHHHHHHHH
Q 017781 319 GVRRVLEMLREEFEL 333 (366)
Q Consensus 319 gv~~~~~~l~~el~~ 333 (366)
...++.++++++.
T Consensus 206 --~~a~~~~~~~~~~ 218 (221)
T 3exr_A 206 --AGAARAFKDEIKR 218 (221)
T ss_dssp --HHHHHHHHHHHHH
T ss_pred --HHHHHHHHHHHHH
Confidence 2345556655543
|
| >2jbm_A Nicotinate-nucleotide pyrophosphorylase; NAD, enzyme, metabolism, transferase, polymorphism, glycosyltransferase, pyridine nucleotide biosynthesis; HET: SRT; 2.0A {Homo sapiens} PDB: 3lar_A | Back alignment and structure |
|---|
Probab=96.97 E-value=0.0011 Score=62.77 Aligned_cols=82 Identities=18% Similarity=0.218 Sum_probs=61.3
Q ss_pred HHHHHHHHhcC--CCEEEEeccCHHH----HHcCCcEEEEcCCCccCCCCCcchHHHHHHHHHHcC---CCceEEEecCC
Q 017781 215 KDVKWLQTITK--LPILVKGVLTAED----VQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQ---GRIPVFLDGGV 285 (366)
Q Consensus 215 ~~i~~lr~~~~--~pv~vK~v~~~~d----~~aGad~I~vs~~gg~~~~~~~~~~~~l~~i~~~~~---~~i~vi~~GGI 285 (366)
+.++.+|+..+ .++++ .+.+.++ .++|+|+|-+++. ++ +.+.++++.++ .+++|.++|||
T Consensus 185 ~ai~~~r~~~~~~~~i~v-ev~tlee~~~A~~aGaD~I~ld~~-------~~---~~l~~~v~~l~~~~~~~~I~ASGGI 253 (299)
T 2jbm_A 185 KAVRAARQAADFALKVEV-ECSSLQEAVQAAEAGADLVLLDNF-------KP---EELHPTATVLKAQFPSVAVEASGGI 253 (299)
T ss_dssp HHHHHHHHHHTTTSCEEE-EESSHHHHHHHHHTTCSEEEEESC-------CH---HHHHHHHHHHHHHCTTSEEEEESSC
T ss_pred HHHHHHHHhCCcCCeEEE-ecCCHHHHHHHHHcCCCEEEECCC-------CH---HHHHHHHHHhhccCCCeeEEEECCC
Confidence 45788888764 45555 6667766 7899999999872 22 44444444442 25899999999
Q ss_pred CCHHHHHHHHHhCcCEEEecHHH
Q 017781 286 RRGTDVFKALALGASGIFIGRPV 308 (366)
Q Consensus 286 ~~~~dv~kalalGAd~V~igr~~ 308 (366)
+.+.+.+..+.|||.+.+|+.+
T Consensus 254 -t~~ni~~~~~aGaD~i~vGs~i 275 (299)
T 2jbm_A 254 -TLDNLPQFCGPHIDVISMGMLT 275 (299)
T ss_dssp -CTTTHHHHCCTTCCEEECTHHH
T ss_pred -CHHHHHHHHHCCCCEEEEChhh
Confidence 8999999999999999999854
|
| >1xg4_A Probable methylisocitrate lyase; 2-methylisocitrate lyase/inhibitor complex, isocitrate lyase superfamily; HET: ICT; 1.60A {Escherichia coli} PDB: 1xg3_A* 1mum_A 1oqf_A 1ujq_A 1o5q_A | Back alignment and structure |
|---|
Probab=96.95 E-value=0.018 Score=54.09 Aligned_cols=175 Identities=11% Similarity=0.056 Sum_probs=105.3
Q ss_pred hHHHHHHHHHcCCceec-CCC------------CCCCHHHHh-------ccCCCceEEEe---eecCCHHHHHHHHHHHH
Q 017781 90 EYATARAASAAGTIMTL-SSW------------STSSVEEVA-------STGPGIRFFQL---YVYKDRNVVAQLVRRAE 146 (366)
Q Consensus 90 e~~la~aa~~~G~~~~v-s~~------------~~~~~e~i~-------~~~~~~~~~Ql---y~~~d~~~~~~~l~ra~ 146 (366)
+...|+.+.+.|+..+. |.. ...+++++. +..+.|....+ | +.+++...+.+++..
T Consensus 26 D~~sA~~~~~aG~~ai~vs~~~~a~~~~G~pD~~~vt~~em~~~~~~I~~~~~~PviaD~d~Gy-g~~~~~~~~~v~~l~ 104 (295)
T 1xg4_A 26 NANHALLAQRAGYQAIYLSGGGVAAGSLGLPDLGISTLDDVLTDIRRITDVCSLPLLVDADIGF-GSSAFNVARTVKSMI 104 (295)
T ss_dssp SHHHHHHHHHTTCSCEEECHHHHHHTTTCCCSSSCSCHHHHHHHHHHHHHHCCSCEEEECTTCS-SSSHHHHHHHHHHHH
T ss_pred CHHHHHHHHHcCCCEEEECchHhhhhhcCCCCCCCCCHHHHHHHHHHHHhhCCCCEEecCCccc-CCCHHHHHHHHHHHH
Confidence 66789999999988764 221 113555543 33345666666 4 236777888888888
Q ss_pred HcCCCEEEEecCCCCCcchhHHHhhhcCCCCccccccccccccCCCccccchhhHHHhhhccCCCCCHHHHHHHHHhc-C
Q 017781 147 RAGFKAIALTVDTPRLGRREADIKNRFTLPPFLTLKNFQGLDLGKMDEANDSGLAAYVAGQIDRSLSWKDVKWLQTIT-K 225 (366)
Q Consensus 147 ~~G~~ai~vtvd~p~~g~r~~d~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~i~~lr~~~-~ 225 (366)
++|+.++.|.=.+ .|+++. ++.+- .+ .+.....+.|+.+++.. +
T Consensus 105 ~aGa~gv~iEd~~---------------~~k~cg--H~~gk---------------~L---~p~~~~~~~I~Aa~~a~~~ 149 (295)
T 1xg4_A 105 KAGAAGLHIEDQV---------------GAKRSG--HRPNK---------------AI---VSKEEMVDRIRAAVDAKTD 149 (295)
T ss_dssp HHTCSEEEEECBC---------------SSCCCT--TSSSC---------------CB---CCHHHHHHHHHHHHHHCSS
T ss_pred HcCCeEEEECCCC---------------CCcccC--CCCCC---------------cc---CCHHHHHHHHHHHHHhccC
Confidence 9999998774221 122111 00000 00 00011123455555554 4
Q ss_pred CCEEEEeccC--H----HH--------HHcCCcEEEEcCCCccCCCCCcchHHHHHHHHHHcCCCceEEEecCC--CCHH
Q 017781 226 LPILVKGVLT--A----ED--------VQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGV--RRGT 289 (366)
Q Consensus 226 ~pv~vK~v~~--~----~d--------~~aGad~I~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~i~vi~~GGI--~~~~ 289 (366)
.++.|..... . ++ .++|||.|.+-+ +++.+.+.++.+.+ ++|++++.-. .++.
T Consensus 150 ~~~~i~aRtda~~~~gl~~ai~ra~ay~eAGAd~i~~e~---------~~~~~~~~~i~~~~--~iP~~~N~~~~g~~p~ 218 (295)
T 1xg4_A 150 PDFVIMARTDALAVEGLDAAIERAQAYVEAGAEMLFPEA---------ITELAMYRQFADAV--QVPILANITEFGATPL 218 (295)
T ss_dssp TTSEEEEEECCHHHHCHHHHHHHHHHHHHTTCSEEEETT---------CCSHHHHHHHHHHH--CSCBEEECCSSSSSCC
T ss_pred CCcEEEEecHHhhhcCHHHHHHHHHHHHHcCCCEEEEeC---------CCCHHHHHHHHHHc--CCCEEEEecccCCCCC
Confidence 5677776532 2 33 999999998843 35678888999888 7899876532 2333
Q ss_pred HHHHHH-HhCcCEEEecHHHHHH
Q 017781 290 DVFKAL-ALGASGIFIGRPVVYS 311 (366)
Q Consensus 290 dv~kal-alGAd~V~igr~~l~~ 311 (366)
.-.+-| ++|.+.|.+|...+.+
T Consensus 219 ~~~~eL~~~G~~~v~~~~~~~~a 241 (295)
T 1xg4_A 219 FTTDELRSAHVAMALYPLSAFRA 241 (295)
T ss_dssp CCHHHHHHTTCSEEEESSHHHHH
T ss_pred CCHHHHHHcCCCEEEEChHHHHH
Confidence 333444 5899999999987765
|
| >1tqx_A D-ribulose-5-phosphate 3-epimerase, putative; structural genomics, protein structure initiative, PSI; 2.00A {Plasmodium falciparum} SCOP: c.1.2.2 | Back alignment and structure |
|---|
Probab=96.91 E-value=0.011 Score=53.48 Aligned_cols=109 Identities=13% Similarity=0.160 Sum_probs=70.4
Q ss_pred HHHH---HHHHhcCCCEEEEec-cCHHH-----HHcC-CcEEEEcC-CCc-cCCCCCcchHHHHHHHHHHcCCCceEEEe
Q 017781 215 KDVK---WLQTITKLPILVKGV-LTAED-----VQAG-AAGIIVSN-HGA-RQLDYVPATIMALEEVVKATQGRIPVFLD 282 (366)
Q Consensus 215 ~~i~---~lr~~~~~pv~vK~v-~~~~d-----~~aG-ad~I~vs~-~gg-~~~~~~~~~~~~l~~i~~~~~~~i~vi~~ 282 (366)
+.++ .+|+. +..+.+-.- .++.+ .+.| +|.|.+-. +.| ......+..++-+.++++..+ +++|.++
T Consensus 102 ~~i~~~~~i~~~-G~k~gvalnp~tp~~~~~~~l~~g~~D~VlvmsV~pGf~gq~f~~~~l~ki~~lr~~~~-~~~I~Vd 179 (227)
T 1tqx_A 102 RCIQLAKEIRDN-NLWCGISIKPKTDVQKLVPILDTNLINTVLVMTVEPGFGGQSFMHDMMGKVSFLRKKYK-NLNIQVD 179 (227)
T ss_dssp HHHHHHHHHHTT-TCEEEEEECTTSCGGGGHHHHTTTCCSEEEEESSCTTCSSCCCCGGGHHHHHHHHHHCT-TCEEEEE
T ss_pred HHHHHHHHHHHc-CCeEEEEeCCCCcHHHHHHHhhcCCcCEEEEeeeccCCCCcccchHHHHHHHHHHHhcc-CCeEEEE
Confidence 4567 77774 544444332 23222 4555 99996532 222 122346677888888888764 7899999
Q ss_pred cCCCCHHHHHHHHHhCcCEEEecHHHHHHhhhcCHHHHHHHHHHHHHHHH
Q 017781 283 GGVRRGTDVFKALALGASGIFIGRPVVYSLAAEGEKGVRRVLEMLREEFE 332 (366)
Q Consensus 283 GGI~~~~dv~kalalGAd~V~igr~~l~~l~~~G~~gv~~~~~~l~~el~ 332 (366)
|||. .+.+.++.++|||.+.+||.+..+ .. ....++.+++.++
T Consensus 180 GGI~-~~ti~~~~~aGAd~~V~GsaIf~~---~d---~~~~i~~l~~~~~ 222 (227)
T 1tqx_A 180 GGLN-IETTEISASHGANIIVAGTSIFNA---ED---PKYVIDTMRVSVQ 222 (227)
T ss_dssp SSCC-HHHHHHHHHHTCCEEEESHHHHTC---SS---HHHHHHHHHHHHH
T ss_pred CCCC-HHHHHHHHHcCCCEEEEeHHHhCC---CC---HHHHHHHHHHHHH
Confidence 9997 788999999999999999987532 12 3344555555443
|
| >2pgw_A Muconate cycloisomerase; enolase superfamily, octamer, small metabolism, PSI-II, NYSGXRC, structural genomics, PR structure initiative; 1.95A {Sinorhizobium meliloti} | Back alignment and structure |
|---|
Probab=96.81 E-value=0.032 Score=54.12 Aligned_cols=117 Identities=18% Similarity=0.116 Sum_probs=85.6
Q ss_pred CCHHHHHHHHHHHHHcCCCEEEEecCCCCCcchhHHHhhhcCCCCccccccccccccCCCccccchhhHHHhhhccCCCC
Q 017781 133 KDRNVVAQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLTLKNFQGLDLGKMDEANDSGLAAYVAGQIDRSL 212 (366)
Q Consensus 133 ~d~~~~~~~l~ra~~~G~~ai~vtvd~p~~g~r~~d~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~ 212 (366)
.+.+.+.+.++++.+.|++++-+.+.+ + ...
T Consensus 146 ~~~e~~~~~a~~~~~~Gf~~iKik~g~-----~--------------------------------------------~~~ 176 (384)
T 2pgw_A 146 ETAEELARDAAVGHAQGERVFYLKVGR-----G--------------------------------------------EKL 176 (384)
T ss_dssp SSHHHHHHHHHHHHHTTCCEEEEECCS-----C--------------------------------------------HHH
T ss_pred CCHHHHHHHHHHHHHcCCCEEEECcCC-----C--------------------------------------------HHH
Confidence 567777888888889999999886542 0 012
Q ss_pred CHHHHHHHHHhc-CCCEEEEec--cCHHH--------HHcCCcEEEEcCCCccCCCCCcchHHHHHHHHHHcCCCceEEE
Q 017781 213 SWKDVKWLQTIT-KLPILVKGV--LTAED--------VQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFL 281 (366)
Q Consensus 213 ~~~~i~~lr~~~-~~pv~vK~v--~~~~d--------~~aGad~I~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~i~vi~ 281 (366)
..+.++.+|+.+ +.||.++.- .+.++ .+.|+++|- +. ..+..++.+.++++.+ ++||++
T Consensus 177 ~~e~v~avr~a~gd~~l~vD~n~~~~~~~a~~~~~~l~~~~i~~iE-------qP-~~~~~~~~~~~l~~~~--~iPI~~ 246 (384)
T 2pgw_A 177 DLEITAAVRGEIGDARLRLDANEGWSVHDAINMCRKLEKYDIEFIE-------QP-TVSWSIPAMAHVREKV--GIPIVA 246 (384)
T ss_dssp HHHHHHHHHTTSTTCEEEEECTTCCCHHHHHHHHHHHGGGCCSEEE-------CC-SCTTCHHHHHHHHHHC--SSCEEE
T ss_pred HHHHHHHHHHHcCCcEEEEecCCCCCHHHHHHHHHHHHhcCCCEEe-------CC-CChhhHHHHHHHHhhC--CCCEEE
Confidence 345677777776 466776632 34444 567888875 11 1234678888888887 799999
Q ss_pred ecCCCCHHHHHHHHHhC-cCEEEecHHH
Q 017781 282 DGGVRRGTDVFKALALG-ASGIFIGRPV 308 (366)
Q Consensus 282 ~GGI~~~~dv~kalalG-Ad~V~igr~~ 308 (366)
++.+.+..|+.+++..| +|.|++....
T Consensus 247 de~i~~~~~~~~~i~~~~~d~v~ik~~~ 274 (384)
T 2pgw_A 247 DQAAFTLYDVYEICRQRAADMICIGPRE 274 (384)
T ss_dssp STTCCSHHHHHHHHHTTCCSEEEECHHH
T ss_pred eCCcCCHHHHHHHHHcCCCCEEEEcchh
Confidence 99999999999999987 8999997643
|
| >3cu2_A Ribulose-5-phosphate 3-epimerase; YP_718263.1, ribulose-PHOS epimerase family, structural genomics, joint center for STR genomics, JCSG; 1.91A {Haemophilus somnus} | Back alignment and structure |
|---|
Probab=96.81 E-value=0.0071 Score=55.15 Aligned_cols=68 Identities=9% Similarity=-0.072 Sum_probs=49.0
Q ss_pred HcCCcEEEE-cCCC--ccCCCCCcchHHHHHHHHHHcCC---CceEEEecCCCCHHHHHHHHH--hCcCEEEecHHHH
Q 017781 240 QAGAAGIIV-SNHG--ARQLDYVPATIMALEEVVKATQG---RIPVFLDGGVRRGTDVFKALA--LGASGIFIGRPVV 309 (366)
Q Consensus 240 ~aGad~I~v-s~~g--g~~~~~~~~~~~~l~~i~~~~~~---~i~vi~~GGI~~~~dv~kala--lGAd~V~igr~~l 309 (366)
..++|.|.+ +-+. |.| ...+..++.+.++++.... +++|.++|||. .+.+.++.. +|||.+.+|+.++
T Consensus 146 l~~~D~vlvMsv~pgfggq-~f~~~~l~ki~~lr~~~~~~~~~~~I~vdGGI~-~~~~~~~~~~~aGad~~VvGSaIf 221 (237)
T 3cu2_A 146 LDQIDVIQLLTLDPRNGTK-YPSELILDRVIQVEKRLGNRRVEKLINIDGSMT-LELAKYFKQGTHQIDWLVSGSALF 221 (237)
T ss_dssp TTTCSEEEEESEETTTTEE-CCHHHHHHHHHHHHHHHGGGGGGCEEEEESSCC-HHHHHHHHHSSSCCCCEEECGGGG
T ss_pred hhcCceeeeeeeccCcCCe-ecChhHHHHHHHHHHHHHhcCCCceEEEECCcC-HHHHHHHHHhCCCCcEEEEeeHHh
Confidence 347998865 2222 222 1244456777777776532 58999999996 788999999 9999999999875
|
| >3tqv_A Nicotinate-nucleotide pyrophosphorylase; glycosyltransferase, transferase; 2.62A {Francisella tularensis subsp} | Back alignment and structure |
|---|
Probab=96.81 E-value=0.0047 Score=57.77 Aligned_cols=82 Identities=16% Similarity=0.246 Sum_probs=63.7
Q ss_pred HHHHHHHHhc-CCCEEEEeccCHHH----HHcCCcEEEEcCCCccCCCCCcchHHHHHHHHHHcCCCceEEEecCCCCHH
Q 017781 215 KDVKWLQTIT-KLPILVKGVLTAED----VQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGT 289 (366)
Q Consensus 215 ~~i~~lr~~~-~~pv~vK~v~~~~d----~~aGad~I~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~i~vi~~GGI~~~~ 289 (366)
+.++.+|+.. ..|+.| .+-+.++ .++|+|.|-+.|. +.+.+.++++.+++++++.++||| +.+
T Consensus 187 ~Av~~ar~~~~~~~IeV-Ev~tl~ea~eAl~aGaD~I~LDn~----------~~~~l~~av~~~~~~v~ieaSGGI-t~~ 254 (287)
T 3tqv_A 187 KAVTKAKKLDSNKVVEV-EVTNLDELNQAIAAKADIVMLDNF----------SGEDIDIAVSIARGKVALEVSGNI-DRN 254 (287)
T ss_dssp HHHHHHHHHCTTSCEEE-EESSHHHHHHHHHTTCSEEEEESC----------CHHHHHHHHHHHTTTCEEEEESSC-CTT
T ss_pred HHHHHHHhhCCCCcEEE-EeCCHHHHHHHHHcCCCEEEEcCC----------CHHHHHHHHHhhcCCceEEEECCC-CHH
Confidence 3477777754 467666 6777766 8899999999882 335677777777678999999999 677
Q ss_pred HHHHHHHhCcCEEEecHHH
Q 017781 290 DVFKALALGASGIFIGRPV 308 (366)
Q Consensus 290 dv~kalalGAd~V~igr~~ 308 (366)
.+.+....|+|.+.+|...
T Consensus 255 ~i~~~a~tGVD~IsvGalt 273 (287)
T 3tqv_A 255 SIVAIAKTGVDFISVGAIT 273 (287)
T ss_dssp THHHHHTTTCSEEECSHHH
T ss_pred HHHHHHHcCCCEEEEChhh
Confidence 8888888999999999754
|
| >3iwp_A Copper homeostasis protein CUTC homolog; conserved sequence motif, metal-binding site, polymorphism, metal binding protein; 2.50A {Homo sapiens} | Back alignment and structure |
|---|
Probab=96.76 E-value=0.015 Score=54.31 Aligned_cols=62 Identities=18% Similarity=0.332 Sum_probs=45.4
Q ss_pred HHcCCcEEEEcCCCccCCCCCcchHHHHHHHHHHcCCCceEEEecCCCCHHHHHHHHH-hCcCEEEec
Q 017781 239 VQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALA-LGASGIFIG 305 (366)
Q Consensus 239 ~~aGad~I~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~i~vi~~GGI~~~~dv~kala-lGAd~V~ig 305 (366)
.+.|+|.|-.|+. .......++.|.++.+..+++++|++.|||+ .+.+.+.++ +|++.+-..
T Consensus 176 i~lGvdrILTSG~----~~~a~~Gl~~Lk~Lv~~a~~rI~ImaGGGV~-~~Ni~~l~~~tG~~~~H~S 238 (287)
T 3iwp_A 176 LTLGFERVLTSGC----DSSALEGLPLIKRLIEQAKGRIVVMPGGGIT-DRNLQRILEGSGATEFHCS 238 (287)
T ss_dssp HHHTCSEEEECTT----SSSTTTTHHHHHHHHHHHTTSSEEEECTTCC-TTTHHHHHHHHCCSEEEEC
T ss_pred HHcCCCEEECCCC----CCChHHhHHHHHHHHHHhCCCCEEEECCCcC-HHHHHHHHHhhCCCEEeEC
Confidence 6679999977652 2223456677777777666689999999995 566776666 899988765
|
| >1y0e_A Putative N-acetylmannosamine-6-phosphate 2-epimer; mannac-6-P epimerase, NANE, structural genomics, protein STR initiative, PSI; 1.95A {Staphylococcus aureus subsp} SCOP: c.1.2.5 | Back alignment and structure |
|---|
Probab=96.76 E-value=0.032 Score=49.60 Aligned_cols=88 Identities=13% Similarity=0.126 Sum_probs=58.0
Q ss_pred HHHHHHHHhcCCCEEE--E-e-----c---cCHHH----HHcCCcEEEEcCCCccCCCCCcchHHHHHHHHHHcCCCceE
Q 017781 215 KDVKWLQTITKLPILV--K-G-----V---LTAED----VQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPV 279 (366)
Q Consensus 215 ~~i~~lr~~~~~pv~v--K-~-----v---~~~~d----~~aGad~I~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~i~v 279 (366)
+.++.+|+.+++|++- | . . .+.++ .++|+|.|.++..-.... .....+.+..+++.++ .+++
T Consensus 46 ~~i~~i~~~~~~pv~~~~~~~~~~~~~~i~~~~~~i~~~~~~Gad~v~l~~~~~~~p--~~~~~~~i~~~~~~~~-~~~v 122 (223)
T 1y0e_A 46 EDILAIKETVDLPVIGIVKRDYDHSDVFITATSKEVDELIESQCEVIALDATLQQRP--KETLDELVSYIRTHAP-NVEI 122 (223)
T ss_dssp HHHHHHHHHCCSCEEEECBCCCTTCCCCBSCSHHHHHHHHHHTCSEEEEECSCSCCS--SSCHHHHHHHHHHHCT-TSEE
T ss_pred HHHHHHHHhcCCCEEeeeccCCCccccccCCcHHHHHHHHhCCCCEEEEeeecccCc--ccCHHHHHHHHHHhCC-CceE
Confidence 4577788888888742 1 1 0 12222 789999998864321100 0134567777877763 5666
Q ss_pred EEecCCCCHHHHHHHHHhCcCEEEecHH
Q 017781 280 FLDGGVRRGTDVFKALALGASGIFIGRP 307 (366)
Q Consensus 280 i~~GGI~~~~dv~kalalGAd~V~igr~ 307 (366)
+. ++.+.+++.++..+|+|.++++.+
T Consensus 123 ~~--~~~t~~e~~~~~~~G~d~i~~~~~ 148 (223)
T 1y0e_A 123 MA--DIATVEEAKNAARLGFDYIGTTLH 148 (223)
T ss_dssp EE--ECSSHHHHHHHHHTTCSEEECTTT
T ss_pred Ee--cCCCHHHHHHHHHcCCCEEEeCCC
Confidence 55 578999999999999999988754
|
| >2f6u_A GGGPS, (S)-3-O-geranylgeranylglyceryl phosphate synthase; non-canonical TIM-barrel, prenyltransferase, archaeal lipid synthesis, dimer; HET: CIT; 1.55A {Archaeoglobus fulgidus} SCOP: c.1.4.1 PDB: 2f6x_A* | Back alignment and structure |
|---|
Probab=96.75 E-value=0.004 Score=56.69 Aligned_cols=60 Identities=18% Similarity=0.225 Sum_probs=48.5
Q ss_pred cEEEEcCCCccCCCCCcchHHHHHHHHHHcCCCceEEEecCCCCHHHHHHHHHhCcCEEEecHHHHHH
Q 017781 244 AGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFIGRPVVYS 311 (366)
Q Consensus 244 d~I~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~i~vi~~GGI~~~~dv~kalalGAd~V~igr~~l~~ 311 (366)
..|.+.. .|. ....+.+.++++.+. ++|+++-|||++++++.+++. |||.|.+|+++...
T Consensus 165 ~~Vyl~~-~G~-----~~~~~~i~~i~~~~~-~~Pv~vGgGI~s~e~a~~~~~-gAd~VIVGSa~v~~ 224 (234)
T 2f6u_A 165 PIIYIEY-SGT-----YGNPELVAEVKKVLD-KARLFYGGGIDSREKAREMLR-YADTIIVGNVIYEK 224 (234)
T ss_dssp SEEEEEC-TTS-----CCCHHHHHHHHHHCS-SSEEEEESCCCSHHHHHHHHH-HSSEEEECHHHHHH
T ss_pred CEEEEeC-CCC-----cchHHHHHHHHHhCC-CCCEEEEecCCCHHHHHHHHh-CCCEEEEChHHHhC
Confidence 6666555 232 346788888888752 689999999999999999999 99999999998754
|
| >2ovl_A Putative racemase; structural genomics, PSI-2, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.13A {Streptomyces coelicolor A3} PDB: 3ck5_A | Back alignment and structure |
|---|
Probab=96.74 E-value=0.012 Score=56.99 Aligned_cols=115 Identities=17% Similarity=0.157 Sum_probs=85.4
Q ss_pred CHHHHHHHHHHHHHcCCCEEEEecCCCCCcchhHHHhhhcCCCCccccccccccccCCCccccchhhHHHhhhccCCCCC
Q 017781 134 DRNVVAQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLTLKNFQGLDLGKMDEANDSGLAAYVAGQIDRSLS 213 (366)
Q Consensus 134 d~~~~~~~l~ra~~~G~~ai~vtvd~p~~g~r~~d~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~ 213 (366)
+.+.+.+.++++.+.|++++-+.+.++ +....
T Consensus 146 ~~e~~~~~a~~~~~~Gf~~iKik~g~~------------------------------------------------~~~~~ 177 (371)
T 2ovl_A 146 PVADLKTQADRFLAGGFRAIKMKVGRP------------------------------------------------DLKED 177 (371)
T ss_dssp CHHHHHHHHHHHHHTTCSCEEEECCCS------------------------------------------------SHHHH
T ss_pred CHHHHHHHHHHHHHcCCCEEEECCCCC------------------------------------------------CHHHH
Confidence 677777888888889999988766431 01123
Q ss_pred HHHHHHHHHhc--CCCEEEEec--cCHHH--------HHcCCcEEEEcCCCccCCCCCcchHHHHHHHHHHcCCCceEEE
Q 017781 214 WKDVKWLQTIT--KLPILVKGV--LTAED--------VQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFL 281 (366)
Q Consensus 214 ~~~i~~lr~~~--~~pv~vK~v--~~~~d--------~~aGad~I~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~i~vi~ 281 (366)
.+.++.+|+.+ +.+|.++.- .+.++ .+.|+++|- +. ..+..++.+.++++.+ ++||++
T Consensus 178 ~e~v~avr~a~G~d~~l~vDan~~~~~~~a~~~~~~l~~~~i~~iE-------qP-~~~~d~~~~~~l~~~~--~iPI~~ 247 (371)
T 2ovl_A 178 VDRVSALREHLGDSFPLMVDANMKWTVDGAIRAARALAPFDLHWIE-------EP-TIPDDLVGNARIVRES--GHTIAG 247 (371)
T ss_dssp HHHHHHHHHHHCTTSCEEEECTTCSCHHHHHHHHHHHGGGCCSEEE-------CC-SCTTCHHHHHHHHHHH--CSCEEE
T ss_pred HHHHHHHHHHhCCCCeEEEECCCCCCHHHHHHHHHHHHhcCCCEEE-------CC-CCcccHHHHHHHHhhC--CCCEEe
Confidence 45678888876 578888843 35554 667888774 11 1234678888888887 799999
Q ss_pred ecCCCCHHHHHHHHHhC-cCEEEecH
Q 017781 282 DGGVRRGTDVFKALALG-ASGIFIGR 306 (366)
Q Consensus 282 ~GGI~~~~dv~kalalG-Ad~V~igr 306 (366)
++.+.+..|+.+++..| +|.|++..
T Consensus 248 dE~~~~~~~~~~~i~~~~~d~v~ik~ 273 (371)
T 2ovl_A 248 GENLHTLYDFHNAVRAGSLTLPEPDV 273 (371)
T ss_dssp CTTCCSHHHHHHHHHHTCCSEECCCT
T ss_pred CCCCCCHHHHHHHHHcCCCCEEeeCc
Confidence 99999999999999987 89999964
|
| >3c2e_A Nicotinate-nucleotide pyrophosphorylase; qprtase, prtase, BNA6, mechanism, cytoplasm, glycosyltransferase, nucleus; 1.90A {Saccharomyces cerevisiae} PDB: 3c2f_A* 3c2o_A* 3c2v_A* 3c2r_A* | Back alignment and structure |
|---|
Probab=96.71 E-value=0.0013 Score=62.05 Aligned_cols=82 Identities=17% Similarity=0.168 Sum_probs=48.7
Q ss_pred HHHHHHHHhcC--CCEEEEeccCHHH----HHcCCcEEEEcCCCccCCCCCcchHHHHHHHHHHcCCC------ceEEEe
Q 017781 215 KDVKWLQTITK--LPILVKGVLTAED----VQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGR------IPVFLD 282 (366)
Q Consensus 215 ~~i~~lr~~~~--~pv~vK~v~~~~d----~~aGad~I~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~------i~vi~~ 282 (366)
+.++.+|+..+ .++++ .+.+.++ .++|+|+|-+++.+ .+.+.++++.+++. ++|.++
T Consensus 187 ~ai~~~r~~~~~~~~i~v-ev~tlee~~~A~~aGaD~I~ld~~~----------~~~l~~~v~~l~~~~~g~~~v~I~AS 255 (294)
T 3c2e_A 187 NAVKNARAVCGFAVKIEV-ECLSEDEATEAIEAGADVIMLDNFK----------GDGLKMCAQSLKNKWNGKKHFLLECS 255 (294)
T ss_dssp HHHHHHHHHHCTTSCEEE-ECSSSHHHHHHHHHTCSEEECCC-------------------------------CCEEEEE
T ss_pred HHHHHHHHhcCcCCeEEE-ecCCHHHHHHHHHcCCCEEEECCCC----------HHHHHHHHHHhcccccCCCCeEEEEE
Confidence 45788888764 45555 5666655 88999999987721 23444544444333 899999
Q ss_pred cCCCCHHHHHHHHHhCcCEEEecHHH
Q 017781 283 GGVRRGTDVFKALALGASGIFIGRPV 308 (366)
Q Consensus 283 GGI~~~~dv~kalalGAd~V~igr~~ 308 (366)
||| +.+.+.+..+.|||.+.+|+.+
T Consensus 256 GGI-t~~ni~~~~~~GvD~i~vGs~i 280 (294)
T 3c2e_A 256 GGL-NLDNLEEYLCDDIDIYSTSSIH 280 (294)
T ss_dssp CCC-CC------CCCSCSEEECGGGT
T ss_pred CCC-CHHHHHHHHHcCCCEEEEechh
Confidence 999 8999999999999999999864
|
| >3q58_A N-acetylmannosamine-6-phosphate 2-epimerase; TIM beta/alpha barrel, ribulose-phosphate binding barrel, carbohydrate metabolic process; HET: BTB; 1.80A {Salmonella enterica subsp} | Back alignment and structure |
|---|
Probab=96.69 E-value=0.031 Score=50.55 Aligned_cols=83 Identities=16% Similarity=0.103 Sum_probs=55.4
Q ss_pred CHHHHHHHHHhcCCCEE--EEe-------c--cCHHH----HHcCCcEEEEcCCCccCCCCCcch-HHHHHHHHHHcCCC
Q 017781 213 SWKDVKWLQTITKLPIL--VKG-------V--LTAED----VQAGAAGIIVSNHGARQLDYVPAT-IMALEEVVKATQGR 276 (366)
Q Consensus 213 ~~~~i~~lr~~~~~pv~--vK~-------v--~~~~d----~~aGad~I~vs~~gg~~~~~~~~~-~~~l~~i~~~~~~~ 276 (366)
+.++++++|+.+++||+ .|- . .+.++ .++|+|.|.+...... .|.. .+.+..+.+ . .
T Consensus 57 ~~~~i~~ir~~v~~Pvig~~k~~~~~~~~~I~~~~~~i~~~~~aGad~I~l~~~~~~----~p~~l~~~i~~~~~-~--g 129 (229)
T 3q58_A 57 GIENLRTVRPHLSVPIIGIIKRDLTGSPVRITPYLQDVDALAQAGADIIAFDASFRS----RPVDIDSLLTRIRL-H--G 129 (229)
T ss_dssp SHHHHHHHGGGCCSCEEEECBCCCSSCCCCBSCSHHHHHHHHHHTCSEEEEECCSSC----CSSCHHHHHHHHHH-T--T
T ss_pred CHHHHHHHHHhcCCCEEEEEeecCCCCceEeCccHHHHHHHHHcCCCEEEECccccC----ChHHHHHHHHHHHH-C--C
Confidence 35678999999999987 231 1 23333 8999999987543211 1222 234444433 2 4
Q ss_pred ceEEEecCCCCHHHHHHHHHhCcCEEEe
Q 017781 277 IPVFLDGGVRRGTDVFKALALGASGIFI 304 (366)
Q Consensus 277 i~vi~~GGI~~~~dv~kalalGAd~V~i 304 (366)
+++++ .+.+.+++.++..+|||.|.+
T Consensus 130 ~~v~~--~v~t~eea~~a~~~Gad~Ig~ 155 (229)
T 3q58_A 130 LLAMA--DCSTVNEGISCHQKGIEFIGT 155 (229)
T ss_dssp CEEEE--ECSSHHHHHHHHHTTCSEEEC
T ss_pred CEEEE--ecCCHHHHHHHHhCCCCEEEe
Confidence 66665 589999999999999999975
|
| >1to3_A Putative aldolase YIHT; beta-alpha barrel, structural genomics, PSI, protein structure initiative; 2.70A {Salmonella typhimurium} SCOP: c.1.10.1 | Back alignment and structure |
|---|
Probab=96.68 E-value=0.027 Score=53.14 Aligned_cols=65 Identities=29% Similarity=0.261 Sum_probs=46.4
Q ss_pred HHcCCcEEEEcCCCccCCCCCcchHHHHHHHHHH----cCCCce-EEEecCCCCHH----HHHHHHHhCcCEEEecHHHH
Q 017781 239 VQAGAAGIIVSNHGARQLDYVPATIMALEEVVKA----TQGRIP-VFLDGGVRRGT----DVFKALALGASGIFIGRPVV 309 (366)
Q Consensus 239 ~~aGad~I~vs~~gg~~~~~~~~~~~~l~~i~~~----~~~~i~-vi~~GGI~~~~----dv~kalalGAd~V~igr~~l 309 (366)
.+.|+|.+.+.-.. + +...++.+.++.+. + .+| |++.||+ +.+ .+..++..||++|.+||.+.
T Consensus 187 ~~lGaD~iKv~~~~----~-~~g~~~~~~~vv~~~~~~~--~~P~Vv~aGG~-~~~~~~~~~~~a~~aGa~Gv~vGRaI~ 258 (304)
T 1to3_A 187 GDSGADLYKVEMPL----Y-GKGARSDLLTASQRLNGHI--NMPWVILSSGV-DEKLFPRAVRVAMEAGASGFLAGRAVW 258 (304)
T ss_dssp TTSSCSEEEECCGG----G-GCSCHHHHHHHHHHHHHTC--CSCEEECCTTS-CTTTHHHHHHHHHHTTCCEEEESHHHH
T ss_pred HHcCCCEEEeCCCc----C-CCCCHHHHHHHHHhccccC--CCCeEEEecCC-CHHHHHHHHHHHHHcCCeEEEEehHHh
Confidence 67899999874310 0 01145556666655 4 789 9999999 553 47778889999999999986
Q ss_pred HH
Q 017781 310 YS 311 (366)
Q Consensus 310 ~~ 311 (366)
..
T Consensus 259 q~ 260 (304)
T 1to3_A 259 SS 260 (304)
T ss_dssp GG
T ss_pred Cc
Confidence 54
|
| >3qja_A IGPS, indole-3-glycerol phosphate synthase; structural genomics, T structural genomics consortium, TBSGC, lyase; 1.29A {Mycobacterium tuberculosis} PDB: 3t40_A* 3t44_A* 3t55_A* 3t78_A* 4fb7_A* | Back alignment and structure |
|---|
Probab=96.66 E-value=0.03 Score=52.00 Aligned_cols=84 Identities=14% Similarity=0.242 Sum_probs=59.3
Q ss_pred HHHHHHHHHhcCCCEEEEec-cCHHH----HHcCCcEEEEcCCCccCCCCCcchHHHHHHHHHHcCCCceEEEecCCCCH
Q 017781 214 WKDVKWLQTITKLPILVKGV-LTAED----VQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRG 288 (366)
Q Consensus 214 ~~~i~~lr~~~~~pv~vK~v-~~~~d----~~aGad~I~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~i~vi~~GGI~~~ 288 (366)
.++++.+|+.+++||+.|.. .+... .++|||+|.+...- ..+..+..+.+..+.+ .+.++++ +++.
T Consensus 102 ~~~l~~ir~~v~lPvl~kdfiid~~qv~~A~~~GAD~VlLi~a~-----l~~~~l~~l~~~a~~l--Gl~~lve--v~t~ 172 (272)
T 3qja_A 102 LDDLDAVRASVSIPVLRKDFVVQPYQIHEARAHGADMLLLIVAA-----LEQSVLVSMLDRTESL--GMTALVE--VHTE 172 (272)
T ss_dssp HHHHHHHHHHCSSCEEEESCCCSHHHHHHHHHTTCSEEEEEGGG-----SCHHHHHHHHHHHHHT--TCEEEEE--ESSH
T ss_pred HHHHHHHHHhCCCCEEECccccCHHHHHHHHHcCCCEEEEeccc-----CCHHHHHHHHHHHHHC--CCcEEEE--cCCH
Confidence 46889999999999999964 45432 88999999873211 1122333333333444 5666653 7899
Q ss_pred HHHHHHHHhCcCEEEecH
Q 017781 289 TDVFKALALGASGIFIGR 306 (366)
Q Consensus 289 ~dv~kalalGAd~V~igr 306 (366)
+++.+|+.+|||.++++.
T Consensus 173 ee~~~A~~~Gad~IGv~~ 190 (272)
T 3qja_A 173 QEADRALKAGAKVIGVNA 190 (272)
T ss_dssp HHHHHHHHHTCSEEEEES
T ss_pred HHHHHHHHCCCCEEEECC
Confidence 999999999999999984
|
| >3igs_A N-acetylmannosamine-6-phosphate 2-epimerase 2; energy metabolism, sugars, csgid, carbohydrate metabolism, isomerase; HET: MSE 16G; 1.50A {Salmonella enterica subsp} SCOP: c.1.2.0 | Back alignment and structure |
|---|
Probab=96.65 E-value=0.039 Score=49.95 Aligned_cols=82 Identities=23% Similarity=0.285 Sum_probs=54.8
Q ss_pred HHHHHHHHHhcCCCEEE--Ee------c---cCHHH----HHcCCcEEEEcCCCccCCCCCcchH-HHHHHHHHHcCCCc
Q 017781 214 WKDVKWLQTITKLPILV--KG------V---LTAED----VQAGAAGIIVSNHGARQLDYVPATI-MALEEVVKATQGRI 277 (366)
Q Consensus 214 ~~~i~~lr~~~~~pv~v--K~------v---~~~~d----~~aGad~I~vs~~gg~~~~~~~~~~-~~l~~i~~~~~~~i 277 (366)
.+.|+++|+.+++||+- |- + .+.++ .++|+|.|.+...... .|..+ +.+..+.+ . .+
T Consensus 58 ~~~i~~ir~~v~~Pvig~~k~d~~~~~~~I~~~~~~i~~~~~~Gad~V~l~~~~~~----~p~~l~~~i~~~~~-~--g~ 130 (232)
T 3igs_A 58 IDNLRMTRSLVSVPIIGIIKRDLDESPVRITPFLDDVDALAQAGAAIIAVDGTARQ----RPVAVEALLARIHH-H--HL 130 (232)
T ss_dssp HHHHHHHHTTCCSCEEEECBCCCSSCCCCBSCSHHHHHHHHHHTCSEEEEECCSSC----CSSCHHHHHHHHHH-T--TC
T ss_pred HHHHHHHHHhcCCCEEEEEeecCCCcceEeCccHHHHHHHHHcCCCEEEECccccC----CHHHHHHHHHHHHH-C--CC
Confidence 46789999999999862 31 1 23333 8999999987553211 12222 34444433 2 46
Q ss_pred eEEEecCCCCHHHHHHHHHhCcCEEEe
Q 017781 278 PVFLDGGVRRGTDVFKALALGASGIFI 304 (366)
Q Consensus 278 ~vi~~GGI~~~~dv~kalalGAd~V~i 304 (366)
++++ .+.+.+++.++..+|||.|.+
T Consensus 131 ~v~~--~v~t~eea~~a~~~Gad~Ig~ 155 (232)
T 3igs_A 131 LTMA--DCSSVDDGLACQRLGADIIGT 155 (232)
T ss_dssp EEEE--ECCSHHHHHHHHHTTCSEEEC
T ss_pred EEEE--eCCCHHHHHHHHhCCCCEEEE
Confidence 6665 589999999999999999975
|
| >3ve9_A Orotidine-5'-phosphate decarboxylase; TIM barrel fold, orotidine 5'-monopho decarboxylase, lyase; 1.45A {Metallosphaera sedula} PDB: 3ve7_A | Back alignment and structure |
|---|
Probab=96.64 E-value=0.0023 Score=57.53 Aligned_cols=79 Identities=22% Similarity=0.222 Sum_probs=55.6
Q ss_pred HHcCCcEEEEcCCCccCCCCCcchHHHHHHHHHHcCCCceEEEecCCCC-HHHHHHHHHhCcCEEEecHHHHHHhhhcCH
Q 017781 239 VQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRR-GTDVFKALALGASGIFIGRPVVYSLAAEGE 317 (366)
Q Consensus 239 ~~aGad~I~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~i~vi~~GGI~~-~~dv~kalalGAd~V~igr~~l~~l~~~G~ 317 (366)
.++|+|++++|.+ ..+.+..+++.++ + .+++++||+- +.+..+++..|||.+.+||+++.+ ..+
T Consensus 125 ~~~G~~GvV~sat----------~~~e~~~ir~~~~-~-f~~v~pGI~~~g~~~~~a~~~Gad~iVvGr~I~~a---~dp 189 (215)
T 3ve9_A 125 RRVNPKGFVAPAT----------RPSMISRVKGDFP-D-KLVISPGVGTQGAKPGIALCHGADYEIVGRSVYQS---ADP 189 (215)
T ss_dssp HHHCCSEEECCTT----------SHHHHHHHHHHCT-T-SEEEECCTTSTTCCTTHHHHTTCSEEEECHHHHTS---SSH
T ss_pred HHcCCCceeeCCC----------CHHHHHHHHHhCC-C-cEEEcCCCCcCcCCHHHHHHcCCCEEEeCHHHcCC---CCH
Confidence 6789999987552 2345667777775 4 6889999984 336778889999999999999754 122
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 017781 318 KGVRRVLEMLREEFELAM 335 (366)
Q Consensus 318 ~gv~~~~~~l~~el~~~m 335 (366)
...++.++++++...
T Consensus 190 ---~~a~~~i~~~i~~~~ 204 (215)
T 3ve9_A 190 ---VRKLEEIVRSQEEVL 204 (215)
T ss_dssp ---HHHHHHHHHHHHHHC
T ss_pred ---HHHHHHHHHHHHHHH
Confidence 234556666666544
|
| >1mdl_A Mandelate racemase; isomerase, mandelate pathway, magnesium; HET: RMN SMN; 1.85A {Pseudomonas aeruginosa} SCOP: c.1.11.2 d.54.1.1 PDB: 1mdr_A* 3uxk_A* 3uxl_A* 1dtn_A* 1mra_A* 2mnr_A 1mns_A | Back alignment and structure |
|---|
Probab=96.63 E-value=0.01 Score=57.01 Aligned_cols=116 Identities=16% Similarity=0.207 Sum_probs=84.7
Q ss_pred CCHHHHHHHHHHHHHcCCCEEEEecCCCCCcchhHHHhhhcCCCCccccccccccccCCCccccchhhHHHhhhccCCCC
Q 017781 133 KDRNVVAQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLTLKNFQGLDLGKMDEANDSGLAAYVAGQIDRSL 212 (366)
Q Consensus 133 ~d~~~~~~~l~ra~~~G~~ai~vtvd~p~~g~r~~d~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~ 212 (366)
.+.+.+.+.++++.+.|++++-++++++ +...
T Consensus 143 ~~~~~~~~~a~~~~~~Gf~~iKik~g~~------------------------------------------------~~~~ 174 (359)
T 1mdl_A 143 DGVKLATERAVTAAELGFRAVKTRIGYP------------------------------------------------ALDQ 174 (359)
T ss_dssp CHHHHHHHHHHHHHHTTCSEEEEECCCS------------------------------------------------SHHH
T ss_pred CCHHHHHHHHHHHHHcCCCEEEEecCCC------------------------------------------------CHHH
Confidence 4566677777888889999998866431 0112
Q ss_pred CHHHHHHHHHhc--CCCEEEEec--cCHHH--------HHcCCcEEEEcCCCccCCCCCcchHHHHHHHHHHcCCCceEE
Q 017781 213 SWKDVKWLQTIT--KLPILVKGV--LTAED--------VQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVF 280 (366)
Q Consensus 213 ~~~~i~~lr~~~--~~pv~vK~v--~~~~d--------~~aGad~I~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~i~vi 280 (366)
..+.++.+|+.+ +.||.++.- .+.++ .+.|+++|- +. ..+..++.+.++++.+ ++||+
T Consensus 175 ~~e~v~avr~a~g~~~~l~vDan~~~~~~~a~~~~~~l~~~~i~~iE-------~P-~~~~~~~~~~~l~~~~--~iPI~ 244 (359)
T 1mdl_A 175 DLAVVRSIRQAVGDDFGIMVDYNQSLDVPAAIKRSQALQQEGVTWIE-------EP-TLQHDYEGHQRIQSKL--NVPVQ 244 (359)
T ss_dssp HHHHHHHHHHHHCSSSEEEEECTTCSCHHHHHHHHHHHHHHTCSCEE-------CC-SCTTCHHHHHHHHHTC--SSCEE
T ss_pred HHHHHHHHHHHhCCCCEEEEECCCCCCHHHHHHHHHHHHHhCCCeEE-------CC-CChhhHHHHHHHHHhC--CCCEE
Confidence 346678888876 577888743 34444 667888773 11 1234678888888877 79999
Q ss_pred EecCCCCHHHHHHHHHhC-cCEEEecH
Q 017781 281 LDGGVRRGTDVFKALALG-ASGIFIGR 306 (366)
Q Consensus 281 ~~GGI~~~~dv~kalalG-Ad~V~igr 306 (366)
+++.+.+..|+.+++..| +|.|++..
T Consensus 245 ~de~~~~~~~~~~~i~~~~~d~v~ik~ 271 (359)
T 1mdl_A 245 MGENWLGPEEMFKALSIGACRLAMPDA 271 (359)
T ss_dssp ECTTCCSHHHHHHHHHTTCCSEECCBT
T ss_pred eCCCCCCHHHHHHHHHcCCCCEEeecc
Confidence 999999999999999987 89999964
|
| >3paj_A Nicotinate-nucleotide pyrophosphorylase, carboxyl; TIM barrel, pyridin dicarboxylate, 5-phospho-alpha-D-ribose 1-diphosphate; 2.00A {Vibrio cholerae o1 biovar el tor} | Back alignment and structure |
|---|
Probab=96.62 E-value=0.011 Score=56.10 Aligned_cols=81 Identities=21% Similarity=0.303 Sum_probs=62.7
Q ss_pred HHHHHHHHhcC-CCEEEEeccCHHH----HHcCCcEEEEcCCCccCCCCCcchHHHHHHHHHHcCCCceEEEecCCCCHH
Q 017781 215 KDVKWLQTITK-LPILVKGVLTAED----VQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGT 289 (366)
Q Consensus 215 ~~i~~lr~~~~-~pv~vK~v~~~~d----~~aGad~I~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~i~vi~~GGI~~~~ 289 (366)
+.++.+|+..+ .|+.| .+-+.++ .++|+|+|-+.|. +.+.+.++++.++++++|.++||| +.+
T Consensus 220 ~Av~~ar~~~p~~kIeV-EVdtldea~eAl~aGaD~I~LDn~----------~~~~l~~av~~l~~~v~ieaSGGI-t~~ 287 (320)
T 3paj_A 220 QAISTAKQLNPGKPVEV-ETETLAELEEAISAGADIIMLDNF----------SLEMMREAVKINAGRAALENSGNI-TLD 287 (320)
T ss_dssp HHHHHHHHHSTTSCEEE-EESSHHHHHHHHHTTCSEEEEESC----------CHHHHHHHHHHHTTSSEEEEESSC-CHH
T ss_pred HHHHHHHHhCCCCeEEE-EECCHHHHHHHHHcCCCEEEECCC----------CHHHHHHHHHHhCCCCeEEEECCC-CHH
Confidence 45778887763 45555 6677766 7899999999882 346677777777678999999999 577
Q ss_pred HHHHHHHhCcCEEEecHH
Q 017781 290 DVFKALALGASGIFIGRP 307 (366)
Q Consensus 290 dv~kalalGAd~V~igr~ 307 (366)
.+.+..+.|+|.+.+|..
T Consensus 288 ~I~~~a~tGVD~isvGal 305 (320)
T 3paj_A 288 NLKECAETGVDYISVGAL 305 (320)
T ss_dssp HHHHHHTTTCSEEECTHH
T ss_pred HHHHHHHcCCCEEEECce
Confidence 777777799999999974
|
| >1viz_A PCRB protein homolog; structural genomics, unknown function; 1.85A {Bacillus subtilis} SCOP: c.1.4.1 | Back alignment and structure |
|---|
Probab=96.53 E-value=0.0032 Score=57.52 Aligned_cols=50 Identities=18% Similarity=0.261 Sum_probs=42.8
Q ss_pred cchHHHHHHHHHHcCCCceEEEecCCCCHHHHHHHHHhCcCEEEecHHHHHH
Q 017781 260 PATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFIGRPVVYS 311 (366)
Q Consensus 260 ~~~~~~l~~i~~~~~~~i~vi~~GGI~~~~dv~kalalGAd~V~igr~~l~~ 311 (366)
....+.+.++++.+. ++||++-|||++++++.+++. |||+|.+|+++...
T Consensus 167 ~~~~~~i~~i~~~~~-~~Pv~vGgGI~t~e~a~~~~~-gAd~VIVGSa~v~~ 216 (240)
T 1viz_A 167 LGDIEAVKKTKAVLE-TSTLFYGGGIKDAETAKQYAE-HADVIVVGNAVYED 216 (240)
T ss_dssp CCCHHHHHHHHHTCS-SSEEEEESSCCSHHHHHHHHT-TCSEEEECTHHHHC
T ss_pred cChHHHHHHHHHhcC-CCCEEEEeccCCHHHHHHHHh-CCCEEEEChHHHhC
Confidence 346778888887652 689999999999999999888 99999999998753
|
| >4gj1_A 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino) methylideneamino] imidazole-4-carboxamide...; HISA, csgid, niaid,; 2.15A {Campylobacter jejuni subsp} | Back alignment and structure |
|---|
Probab=96.48 E-value=0.0023 Score=58.59 Aligned_cols=67 Identities=21% Similarity=0.313 Sum_probs=52.9
Q ss_pred HHcCCcEEEEcCCCccCCCCCcchHHHHHHHHHHcCCCceEEEecCCCCHHHHHHHHHhCcCEEEecHHH
Q 017781 239 VQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFIGRPV 308 (366)
Q Consensus 239 ~~aGad~I~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~i~vi~~GGI~~~~dv~kalalGAd~V~igr~~ 308 (366)
.+.|+|.+++-.-.+. ..+.+...+.+.++.+.+ .+|+.+.||||+-+|+.+.|.+|||-|.+++..
T Consensus 41 ~~~gad~lhvvDld~a-~~~~~~~~~~i~~i~~~~--~~pl~vGGGIrs~e~~~~~l~~GadkVii~t~a 107 (243)
T 4gj1_A 41 EKAGAKELHLVDLTGA-KDPSKRQFALIEKLAKEV--SVNLQVGGGIRSKEEVKALLDCGVKRVVIGSMA 107 (243)
T ss_dssp HHHTCCEEEEEEHHHH-HCGGGCCHHHHHHHHHHC--CSEEEEESSCCCHHHHHHHHHTTCSEEEECTTT
T ss_pred HHCCCCEEEEEecCcc-cccchhHHHHHHHHHHhc--CCCeEeccccccHHHHHHHHHcCCCEEEEcccc
Confidence 5678998876431110 112345678888998887 799999999999999999999999999999854
|
| >3khj_A Inosine-5-monophosphate dehydrogenase; enzyme-inhibitor complex, oxidoreductase; HET: IMP C64; 2.80A {Cryptosporidium parvum} | Back alignment and structure |
|---|
Probab=96.46 E-value=0.012 Score=56.91 Aligned_cols=84 Identities=21% Similarity=0.258 Sum_probs=62.8
Q ss_pred HHHHHHHHhcCCCEEEEeccCHHH-----HHcCCcEEEEcCCCccCCCCCcchHHHHHHHHHHcCCCceEEEecCCCCHH
Q 017781 215 KDVKWLQTITKLPILVKGVLTAED-----VQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGT 289 (366)
Q Consensus 215 ~~i~~lr~~~~~pv~vK~v~~~~d-----~~aGad~I~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~i~vi~~GGI~~~~ 289 (366)
+.++++|+..++|+.+-...+..+ .++|+|.|++....|. .....+.+.++++.+ ++||++ |.+.+.+
T Consensus 85 ~~I~~vk~~~~~pvga~ig~~~~e~a~~l~eaGad~I~ld~a~G~----~~~~~~~i~~i~~~~--~~~Viv-g~v~t~e 157 (361)
T 3khj_A 85 NEVLKVKNSGGLRVGAAIGVNEIERAKLLVEAGVDVIVLDSAHGH----SLNIIRTLKEIKSKM--NIDVIV-GNVVTEE 157 (361)
T ss_dssp HHHHHHHHTTCCCCEEEECTTCHHHHHHHHHTTCSEEEECCSCCS----BHHHHHHHHHHHHHC--CCEEEE-EEECSHH
T ss_pred HHHHHHHhccCceEEEEeCCCHHHHHHHHHHcCcCeEEEeCCCCC----cHHHHHHHHHHHHhc--CCcEEE-ccCCCHH
Confidence 467788877778988886543222 8999999988543221 122346777777776 788887 6789999
Q ss_pred HHHHHHHhCcCEEEec
Q 017781 290 DVFKALALGASGIFIG 305 (366)
Q Consensus 290 dv~kalalGAd~V~ig 305 (366)
++.+++.+|||+|.+|
T Consensus 158 ~A~~l~~aGaD~I~VG 173 (361)
T 3khj_A 158 ATKELIENGADGIKVG 173 (361)
T ss_dssp HHHHHHHTTCSEEEEC
T ss_pred HHHHHHHcCcCEEEEe
Confidence 9999999999999985
|
| >3iv3_A Tagatose 1,6-diphosphate aldolase 2; TIM barrel, phosphate binding, tagatose-bisphosphate aldolas tagatose-1,6-bisphosphate aldolase; HET: MSE; 1.80A {Streptococcus mutans} PDB: 3mhf_A 3mhg_A 3jrk_A 3kao_A* 3myp_A 3myo_A | Back alignment and structure |
|---|
Probab=96.45 E-value=0.03 Score=53.40 Aligned_cols=100 Identities=21% Similarity=0.254 Sum_probs=57.3
Q ss_pred HHcCCcEEEEcCCCccC----C---CCCcc---hHHHHHHHHHHcCCCceEE-EecCCCCHHHHHHH----HHhCc--CE
Q 017781 239 VQAGAAGIIVSNHGARQ----L---DYVPA---TIMALEEVVKATQGRIPVF-LDGGVRRGTDVFKA----LALGA--SG 301 (366)
Q Consensus 239 ~~aGad~I~vs~~gg~~----~---~~~~~---~~~~l~~i~~~~~~~i~vi-~~GGI~~~~dv~ka----lalGA--d~ 301 (366)
.+.|+|.+.+--.|-.. . ....+ ..+...++.+.. .+|+| .+||. +.+++.+. +..|| .+
T Consensus 200 ~elGaDv~Kve~p~~~~~v~g~~~~~~~y~~~ea~~~f~~~~~a~--~~P~v~lsgG~-~~~~fl~~v~~A~~aGa~f~G 276 (332)
T 3iv3_A 200 ERFGIDVLKVEVPVNMVYVEGFAEGEVVYSKEEAAQAFREQEAST--DLPYIYLSAGV-SAELFQETLVFAHKAGAKFNG 276 (332)
T ss_dssp GGGCCSEEEECCSSCGGGBTTTCSSCCCBCHHHHHHHHHHHHHTC--SSCEEEECTTC-CHHHHHHHHHHHHHHTCCCCE
T ss_pred cCcCCcEEEEecCCChhhhcccccccccccHHHHHHHHHHHHhcC--CCCEEEECCCC-CHHHHHHHHHHHHHcCCCcce
Confidence 46799999985322100 0 01112 223455555554 79965 79998 56666654 45799 99
Q ss_pred EEecHHHHHHhhhcCHHHHHHHHHHHHHHHHHHHHHcCCCChhhhcc
Q 017781 302 IFIGRPVVYSLAAEGEKGVRRVLEMLREEFELAMALSGCRSLKEITR 348 (366)
Q Consensus 302 V~igr~~l~~l~~~G~~gv~~~~~~l~~el~~~m~~~G~~~l~el~~ 348 (366)
|.+||.+-.. +|..+.+.=.+..+.+|+-.|..++++|+.
T Consensus 277 v~~GRnvwq~-------~v~~~~~~~~~~~~~~l~~~g~~~i~~l~~ 316 (332)
T 3iv3_A 277 VLCGRATWAG-------SVQVYMEEGKEAARQWLRTSGLQNINELNK 316 (332)
T ss_dssp EEECHHHHTT-------HHHHHHHHCHHHHHHHHTTHHHHHHHHHHH
T ss_pred EEeeHHHHHh-------hhhhhccccHHHHHHHHHHHhHHHHHHHHH
Confidence 9999987432 222233322344555666666666666653
|
| >2wqp_A Polysialic acid capsule biosynthesis protein SIAC; NEUB, inhibitor, TIM barrel, sialic acid synthase, transfera; HET: WQP; 1.75A {Neisseria meningitidis} PDB: 2zdr_A 1xuz_A* 1xuu_A 3cm4_A | Back alignment and structure |
|---|
Probab=96.44 E-value=0.11 Score=49.75 Aligned_cols=230 Identities=15% Similarity=0.176 Sum_probs=120.7
Q ss_pred CceEecccccccccCChhhHHHHHHHHHcCCceec-CCCCCCCHHHH-hc-c--CCC----ceEEEeee--cCCHHHHHH
Q 017781 72 MPIMIAPTAMQKMAHPEGEYATARAASAAGTIMTL-SSWSTSSVEEV-AS-T--GPG----IRFFQLYV--YKDRNVVAQ 140 (366)
Q Consensus 72 ~Pi~iApm~~~~l~~~~~e~~la~aa~~~G~~~~v-s~~~~~~~e~i-~~-~--~~~----~~~~Qly~--~~d~~~~~~ 140 (366)
.|++||-++.......+--..++++|+++|+-.+= .++ ..+.+ .. . ... ...+.+|. .-..+....
T Consensus 19 ~~~iIAe~g~NH~gs~e~a~~li~~ak~aGadavKfq~~---k~~tl~s~~~~~fq~~~~~~~~y~~~~~~~l~~e~~~~ 95 (349)
T 2wqp_A 19 EPLIICEIGINHEGSLKTAFEMVDAAYNAGAEVVKHQTH---IVEDEMSDEAKQVIPGNADVSIYEIMERCALNEEDEIK 95 (349)
T ss_dssp CCEEEEEEETTTTTCHHHHHHHHHHHHHHTCSEEEEEEC---CHHHHCCGGGGGCCCTTCSSCHHHHHHHHCCCHHHHHH
T ss_pred ceEEEEecCCcccCCHHHHHHHHHHHHHhCCCEEeeeec---ccccccCcchhccccCCCCccHHHHHHHhCCCHHHHHH
Confidence 58999988653322223345899999999998763 222 23333 11 1 100 00001111 235677788
Q ss_pred HHHHHHHcCCCEEEEecCCCCCcchhHHHhhhcCCCCccccccccccccCCCccccchhhHHHhhhccCCCC-CHHHHHH
Q 017781 141 LVRRAERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLTLKNFQGLDLGKMDEANDSGLAAYVAGQIDRSL-SWKDVKW 219 (366)
Q Consensus 141 ~l~ra~~~G~~ai~vtvd~p~~g~r~~d~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~-~~~~i~~ 219 (366)
+.+.+++.|...+--=.| .+.-|....+.+|. +. + ...+. .+..++.
T Consensus 96 L~~~~~~~Gi~~~st~~d-----~~svd~l~~~~v~~-~K-----------I---------------~S~~~~n~~LL~~ 143 (349)
T 2wqp_A 96 LKEYVESKGMIFISTLFS-----RAAALRLQRMDIPA-YK-----------I---------------GSGECNNYPLIKL 143 (349)
T ss_dssp HHHHHHHTTCEEEEEECS-----HHHHHHHHHHTCSC-EE-----------E---------------CGGGTTCHHHHHH
T ss_pred HHHHHHHhCCeEEEeeCC-----HHHHHHHHhcCCCE-EE-----------E---------------CcccccCHHHHHH
Confidence 888899999776542222 12223322232221 00 0 01122 4566777
Q ss_pred HHHhcCCCEEEEec-cCHHH--------HHcCCcEEEEcCCCccCCCCCcchHHHHHHHHHHcCCCceEEEecCCCCHHH
Q 017781 220 LQTITKLPILVKGV-LTAED--------VQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTD 290 (366)
Q Consensus 220 lr~~~~~pv~vK~v-~~~~d--------~~aGad~I~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~i~vi~~GGI~~~~d 290 (366)
+-+ +++||++|.. .+.++ .+.|.+.+.+.....+.-......+.+++.+++..+ .+||..++==.-..-
T Consensus 144 va~-~gkPviLstGmat~~Ei~~Ave~i~~~G~~iiLlhc~s~Yp~~~~~~nL~ai~~lk~~f~-~lpVg~sdHt~G~~~ 221 (349)
T 2wqp_A 144 VAS-FGKPIILSTGMNSIESIKKSVEIIREAGVPYALLHCTNIYPTPYEDVRLGGMNDLSEAFP-DAIIGLSDHTLDNYA 221 (349)
T ss_dssp HHT-TCSCEEEECTTCCHHHHHHHHHHHHHHTCCEEEEECCCCSSCCGGGCCTHHHHHHHHHCT-TSEEEEECCSSSSHH
T ss_pred HHh-cCCeEEEECCCCCHHHHHHHHHHHHHcCCCEEEEeccCCCCCChhhcCHHHHHHHHHHCC-CCCEEeCCCCCcHHH
Confidence 766 5899999955 46666 667887777643222111111124566777766542 478876652222444
Q ss_pred HHHHHHhCcCEEEecHHHHHHhhhcCHHHH----HHHHHHHHHHHHHHHHHcCC
Q 017781 291 VFKALALGASGIFIGRPVVYSLAAEGEKGV----RRVLEMLREEFELAMALSGC 340 (366)
Q Consensus 291 v~kalalGAd~V~igr~~l~~l~~~G~~gv----~~~~~~l~~el~~~m~~~G~ 340 (366)
...|+++||+ +|=+-|--.-+..|.++- -+-+..|.++++..-..+|.
T Consensus 222 ~~AAvAlGA~--iIEkH~tld~a~~G~D~~~SL~p~ef~~lv~~ir~~~~alG~ 273 (349)
T 2wqp_A 222 CLGAVALGGS--ILERHFTDRMDRPGPDIVCSMNPDTFKELKQGAHALKLARGG 273 (349)
T ss_dssp HHHHHHHTCC--EEEEEBCSCTTCCSTTGGGCBCHHHHHHHHHHHHHHHHHSSC
T ss_pred HHHHHHhCCC--EEEeCCCccccCCCCChhhhCCHHHHHHHHHHHHHHHHHhCC
Confidence 5568899999 555443221122232210 12345666777777777775
|
| >1vkf_A Glycerol uptake operon antiterminator-related Pro; struc genomics, joint center for structural genomics, JCSG, prote structure initiative; HET: CIT; 1.65A {Thermotoga maritima} SCOP: c.1.29.1 | Back alignment and structure |
|---|
Probab=96.40 E-value=0.0029 Score=55.52 Aligned_cols=82 Identities=12% Similarity=0.091 Sum_probs=56.0
Q ss_pred HHHHHHHHhcCCCEEEEecc----CHHH-----HHcCCcEEEEcCCCccCCCCCcchHHHHHHHHHHcCCCceEEEecCC
Q 017781 215 KDVKWLQTITKLPILVKGVL----TAED-----VQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGV 285 (366)
Q Consensus 215 ~~i~~lr~~~~~pv~vK~v~----~~~d-----~~aGad~I~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~i~vi~~GGI 285 (366)
..++..|+. ++..+-+.-. +.+. .+...|.+-+-- ++-..+.+.++ -++|||+.|+|
T Consensus 93 ~~i~~Akk~-GL~tIqR~FliDs~al~~~~~~I~~~kPD~iEiLP--------g~v~p~~I~~v-----~~~PiIaGGlI 158 (188)
T 1vkf_A 93 KNYVVAKKN-GIPAVLRFFALDSKAVERGIEQIETLGVDVVEVLP--------GAVAPKVARKI-----PGRTVIAAGLV 158 (188)
T ss_dssp HHHHHHHHT-TCCEEEEEECCSHHHHHHHHHHHHHHTCSEEEEES--------GGGHHHHHTTS-----TTSEEEEESCC
T ss_pred HHHHHHHHc-CCEEeeEEEEEEeHHHhhhhhhccccCCCeEeecC--------CCchHHHHHHh-----cCCCEEEECCc
Confidence 346666653 6655555431 1121 667788876521 12122444444 37899999999
Q ss_pred CCHHHHHHHHHhCcCEEEecHHHHHH
Q 017781 286 RRGTDVFKALALGASGIFIGRPVVYS 311 (366)
Q Consensus 286 ~~~~dv~kalalGAd~V~igr~~l~~ 311 (366)
++.+|+.+ +..||++|..++.-||.
T Consensus 159 ~t~edv~~-l~aGA~aIsTs~~~LW~ 183 (188)
T 1vkf_A 159 ETEEEARE-ILKHVSAISTSSRILWK 183 (188)
T ss_dssp CSHHHHHH-HTTTSSEEEECCHHHHT
T ss_pred CCHHHHHH-HHCCCeEEEeCCHHHhC
Confidence 99999999 99999999999998885
|
| >1vpx_A Protein (transaldolase (EC 2.2.1.2)); TM0295, structural genomics, JOI for structural genomics, JCSG; HET: GOL; 2.40A {Thermotoga maritima} SCOP: c.1.10.1 | Back alignment and structure |
|---|
Probab=96.37 E-value=0.23 Score=44.80 Aligned_cols=114 Identities=18% Similarity=0.208 Sum_probs=76.1
Q ss_pred CHHHHHHHHHhc--CCCEEEEeccCHHH----HHcCCcEEEEcCCCccCCCCCcchHHHHHHHHHHc---CCCceEEEec
Q 017781 213 SWKDVKWLQTIT--KLPILVKGVLTAED----VQAGAAGIIVSNHGARQLDYVPATIMALEEVVKAT---QGRIPVFLDG 283 (366)
Q Consensus 213 ~~~~i~~lr~~~--~~pv~vK~v~~~~d----~~aGad~I~vs~~gg~~~~~~~~~~~~l~~i~~~~---~~~i~vi~~G 283 (366)
+|+-++.++... ++++-+=.+.+.+. .++|++.|.. .-||-.+.+.+....+.+++... +.+..+++.
T Consensus 99 T~eGl~Ai~~L~~eGI~vNvTliFS~~QA~laa~AGa~~iSp--FVgRidd~g~dG~~~v~~i~~~~~~~~~~t~iL~A- 175 (230)
T 1vpx_A 99 TPDGIKAVKTLSAEGIKTNVTLVFSPAQAILAAKAGATYVSP--FVGRMDDLSNDGMRMLGEIVEIYNNYGFETEIIAA- 175 (230)
T ss_dssp SHHHHHHHHHHHHTTCCEEEEEECSHHHHHHHHHHTCSEEEE--BHHHHHHTTSCHHHHHHHHHHHHHHHTCSCEEEEB-
T ss_pred CHHHHHHHHHHHHCCCCEEEEEeCCHHHHHHHHhCCCeEEEe--ccchhhhccccHHHHHHHHHHHHHHcCCCeEEEee-
Confidence 555444444332 89999999999887 8899997753 33443344444555555555433 235566665
Q ss_pred CCCCHHHHHHHHHhCcCEEEecHHHHHHhhhcC--HHHHHHHHHHHHH
Q 017781 284 GVRRGTDVFKALALGASGIFIGRPVVYSLAAEG--EKGVRRVLEMLRE 329 (366)
Q Consensus 284 GI~~~~dv~kalalGAd~V~igr~~l~~l~~~G--~~gv~~~~~~l~~ 329 (366)
++|++.++.++..+|+|.+-+.-.++..+...+ .+|++.+.+.+.+
T Consensus 176 S~r~~~~v~~~~l~G~d~~Tip~~~l~~l~~h~lt~~gv~~F~~d~~~ 223 (230)
T 1vpx_A 176 SIRHPMHVVEAALMGVDIVTMPFAVLEKLFKHPMTDLGIERFMEDWKK 223 (230)
T ss_dssp SCCSHHHHHHHHHHTCSEEEECHHHHHHHTCCHHHHHHHHHHHHHHHH
T ss_pred ccCCHHHHHHHHHhCCCEEECCHHHHHHHHcCCCHHHHHHHHHHHHHH
Confidence 499999999999999999999988888765433 3556555555443
|
| >4dbe_A Orotidine 5'-phosphate decarboxylase; TIM barrel, orotidine 5'-monophosphate decarboxylase, inhibi lyase-lyase inhibitor complex; HET: BMP; 1.79A {Sulfolobus solfataricus} | Back alignment and structure |
|---|
Probab=96.37 E-value=0.0071 Score=54.59 Aligned_cols=81 Identities=15% Similarity=0.194 Sum_probs=56.1
Q ss_pred HHcCCcEEEEcCCCccCCCCCcchHHHHHHHHHHcCCCceEEEecCCCCH-HHHHHHHHhCcCEEEecHHHHHHhhhcCH
Q 017781 239 VQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRG-TDVFKALALGASGIFIGRPVVYSLAAEGE 317 (366)
Q Consensus 239 ~~aGad~I~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~i~vi~~GGI~~~-~dv~kalalGAd~V~igr~~l~~l~~~G~ 317 (366)
.++|+|++++|.+ ..+.+..+++.++ + -+++.+||+-. .+..+++..|||.+.+|||++.+ ..+
T Consensus 132 ~~~g~~GvV~sat----------~p~e~~~ir~~~~-~-~~~vtPGI~~~g~tp~~a~~~Gad~iVVGR~I~~A---~dP 196 (222)
T 4dbe_A 132 REISPKGIVVGGT----------KLDHITQYRRDFE-K-MTIVSPGMGSQGGSYGDAVCAGADYEIIGRSIYNA---GNP 196 (222)
T ss_dssp HHHCCSEEEECTT----------CHHHHHHHHHHCT-T-CEEEECCBSTTSBCTTHHHHHTCSEEEECHHHHTS---SSH
T ss_pred HHhCCCEEEECCC----------CHHHHHHHHHhCC-C-CEEEcCCcccCccCHHHHHHcCCCEEEECHHhcCC---CCH
Confidence 6789999998652 1245667777775 4 58888999853 26778888999999999999764 222
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 017781 318 KGVRRVLEMLREEFELAMAL 337 (366)
Q Consensus 318 ~gv~~~~~~l~~el~~~m~~ 337 (366)
....+.++++++.....
T Consensus 197 ---~~aa~~i~~~i~~~~~~ 213 (222)
T 4dbe_A 197 ---LTALRTINKIIEDKVMK 213 (222)
T ss_dssp ---HHHHHHHHHHHHHHHHH
T ss_pred ---HHHHHHHHHHHHHHHHH
Confidence 23455666666664443
|
| >3l0g_A Nicotinate-nucleotide pyrophosphorylase; ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, ALS collaborative crystallography; 2.05A {Ehrlichia chaffeensis} | Back alignment and structure |
|---|
Probab=96.36 E-value=0.013 Score=55.05 Aligned_cols=82 Identities=17% Similarity=0.167 Sum_probs=62.7
Q ss_pred HHHHHHHHhc-CCCEEEEeccCHHH----HHcCCcEEEEcCCCccCCCCCcchHHHHHHHHHHcCCCceEEEecCCCCHH
Q 017781 215 KDVKWLQTIT-KLPILVKGVLTAED----VQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGT 289 (366)
Q Consensus 215 ~~i~~lr~~~-~~pv~vK~v~~~~d----~~aGad~I~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~i~vi~~GGI~~~~ 289 (366)
+.++++|+.. ..|+.| .+-+.++ .++|+|.|-+.|. +.+.+.++++.+++++.+.++||| +.+
T Consensus 196 ~Av~~ar~~~p~~kIeV-Ev~tl~e~~eAl~aGaDiImLDn~----------s~~~l~~av~~~~~~v~leaSGGI-t~~ 263 (300)
T 3l0g_A 196 LAIQRLRKNLKNEYIAI-ECDNISQVEESLSNNVDMILLDNM----------SISEIKKAVDIVNGKSVLEVSGCV-NIR 263 (300)
T ss_dssp HHHHHHHHHSSSCCEEE-EESSHHHHHHHHHTTCSEEEEESC----------CHHHHHHHHHHHTTSSEEEEESSC-CTT
T ss_pred HHHHHHHHhCCCCCEEE-EECCHHHHHHHHHcCCCEEEECCC----------CHHHHHHHHHhhcCceEEEEECCC-CHH
Confidence 4577788765 345544 5667766 8999999999883 336667777767678999999999 677
Q ss_pred HHHHHHHhCcCEEEecHHH
Q 017781 290 DVFKALALGASGIFIGRPV 308 (366)
Q Consensus 290 dv~kalalGAd~V~igr~~ 308 (366)
.+.+..+.|+|.+.+|...
T Consensus 264 ~i~~~A~tGVD~IsvGalt 282 (300)
T 3l0g_A 264 NVRNIALTGVDYISIGCIT 282 (300)
T ss_dssp THHHHHTTTCSEEECGGGT
T ss_pred HHHHHHHcCCCEEEeCccc
Confidence 8887778999999999643
|
| >1vli_A Spore coat polysaccharide biosynthesis protein SP; 2636322, JCSG, protein structure initiative, BS SPSE, PSI; 2.38A {Bacillus subtilis} SCOP: b.85.1.1 c.1.10.6 | Back alignment and structure |
|---|
Probab=96.34 E-value=0.18 Score=48.94 Aligned_cols=195 Identities=12% Similarity=0.126 Sum_probs=102.4
Q ss_pred CceEecccccccccCChhhHHHHHHHHHcCCcee-cCCCCCCCHHHHh-ccCCCceEEE-----------eee--cCCHH
Q 017781 72 MPIMIAPTAMQKMAHPEGEYATARAASAAGTIMT-LSSWSTSSVEEVA-STGPGIRFFQ-----------LYV--YKDRN 136 (366)
Q Consensus 72 ~Pi~iApm~~~~l~~~~~e~~la~aa~~~G~~~~-vs~~~~~~~e~i~-~~~~~~~~~Q-----------ly~--~~d~~ 136 (366)
.|++||=+|.......+--..++++|+++|+-.+ ..++. .+.+. ... .-|| +|. .-..+
T Consensus 28 ~~~IIAEiG~NH~Gsle~A~~li~~Ak~aGAdavKfQ~~k---~~tl~s~~~---~~fq~~~~~~~~~ye~~~~~~l~~e 101 (385)
T 1vli_A 28 PVFIIAEAGINHDGKLDQAFALIDAAAEAGADAVKFQMFQ---ADRMYQKDP---GLYKTAAGKDVSIFSLVQSMEMPAE 101 (385)
T ss_dssp CCEEEEEEETTTTTCHHHHHHHHHHHHHHTCSEEEECCBC---GGGGTSCCC------------CCCHHHHGGGBSSCGG
T ss_pred CcEEEEeecCcccccHHHHHHHHHHHHHhCCCEEeeeeec---cCcccCcch---hhhccCCCCCccHHHHHHhcCCCHH
Confidence 6899998865432222223588999999998876 33332 22221 100 0122 221 23567
Q ss_pred HHHHHHHHHHHcCCCEEEEecCCCCCcchhHHHhhhcCCCCccccccccccccCCCccccchhhHHHhhhccCCCC-CHH
Q 017781 137 VVAQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLTLKNFQGLDLGKMDEANDSGLAAYVAGQIDRSL-SWK 215 (366)
Q Consensus 137 ~~~~~l~ra~~~G~~ai~vtvd~p~~g~r~~d~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~-~~~ 215 (366)
....+.+.+++.|...+. .|. ..+.-|+...+.+|. +. + ...+. .+.
T Consensus 102 ~~~~L~~~~~~~Gi~~~s----tpf-D~~svd~l~~~~vd~-~K-----------I---------------gS~~~~N~p 149 (385)
T 1vli_A 102 WILPLLDYCREKQVIFLS----TVC-DEGSADLLQSTSPSA-FK-----------I---------------ASYEINHLP 149 (385)
T ss_dssp GHHHHHHHHHHTTCEEEC----BCC-SHHHHHHHHTTCCSC-EE-----------E---------------CGGGTTCHH
T ss_pred HHHHHHHHHHHcCCcEEE----ccC-CHHHHHHHHhcCCCE-EE-----------E---------------CcccccCHH
Confidence 778888889999876542 222 222223332232221 00 0 01122 456
Q ss_pred HHHHHHHhcCCCEEEEec-cCHHH--------HHcCC-cEEEEcCCCccCCCCCcchHHHHHHHHHHcCCCceEEEecCC
Q 017781 216 DVKWLQTITKLPILVKGV-LTAED--------VQAGA-AGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGV 285 (366)
Q Consensus 216 ~i~~lr~~~~~pv~vK~v-~~~~d--------~~aGa-d~I~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~i~vi~~GGI 285 (366)
.++.+-+ +++||++|.. .+.++ .+.|. +.+.+.....+.-......+.+++.+++..+ .+||..++=-
T Consensus 150 LL~~va~-~gKPViLStGmaTl~Ei~~Ave~i~~~Gn~~iiLlhc~s~YPtp~~~~nL~aI~~Lk~~f~-~lpVG~SdHt 227 (385)
T 1vli_A 150 LLKYVAR-LNRPMIFSTAGAEISDVHEAWRTIRAEGNNQIAIMHCVAKYPAPPEYSNLSVIPMLAAAFP-EAVIGFSDHS 227 (385)
T ss_dssp HHHHHHT-TCSCEEEECTTCCHHHHHHHHHHHHTTTCCCEEEEEECSSSSCCGGGCCTTHHHHHHHHST-TSEEEEEECC
T ss_pred HHHHHHh-cCCeEEEECCCCCHHHHHHHHHHHHHCCCCcEEEEeccCCCCCChhhcCHHHHHHHHHHcC-CCCEEeCCCC
Confidence 6777766 5899999955 46666 66787 5555543211110001113456666666542 4788665532
Q ss_pred CC-HHHHHHHHHhCcCEEEecHHH
Q 017781 286 RR-GTDVFKALALGASGIFIGRPV 308 (366)
Q Consensus 286 ~~-~~dv~kalalGAd~V~igr~~ 308 (366)
.. ..-...|+++||+ +|=+-|
T Consensus 228 ~G~~~~~~AAvAlGA~--iIEkHf 249 (385)
T 1vli_A 228 EHPTEAPCAAVRLGAK--LIEKHF 249 (385)
T ss_dssp SSSSHHHHHHHHTTCS--EEEEEB
T ss_pred CCchHHHHHHHHcCCC--EEEeCC
Confidence 22 4455568899999 455443
|
| >1o4u_A Type II quinolic acid phosphoribosyltransferase; structural genomics, joint center for structural genomics, J protein structure initiative; 2.50A {Thermotoga maritima} SCOP: c.1.17.1 d.41.2.1 | Back alignment and structure |
|---|
Probab=96.34 E-value=0.0038 Score=58.48 Aligned_cols=82 Identities=22% Similarity=0.222 Sum_probs=61.3
Q ss_pred HHHHHHHHhcC--CCEEEEeccCHHH----HHcCCcEEEEcCCCccCCCCCcchHHHHHHHHHHcCC---CceEEEecCC
Q 017781 215 KDVKWLQTITK--LPILVKGVLTAED----VQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQG---RIPVFLDGGV 285 (366)
Q Consensus 215 ~~i~~lr~~~~--~pv~vK~v~~~~d----~~aGad~I~vs~~gg~~~~~~~~~~~~l~~i~~~~~~---~i~vi~~GGI 285 (366)
+.++.+|+..+ .+|.| .+.+.++ .++|+|+|.+.|. +.+.+.++++.+++ ++++.++|||
T Consensus 181 ~av~~ar~~~~~~~~I~V-EV~tleea~eA~~aGaD~I~LDn~----------~~e~l~~av~~l~~~~~~v~ieASGGI 249 (285)
T 1o4u_A 181 RAVQEVRKIIPFTTKIEV-EVENLEDALRAVEAGADIVMLDNL----------SPEEVKDISRRIKDINPNVIVEVSGGI 249 (285)
T ss_dssp HHHHHHHTTSCTTSCEEE-EESSHHHHHHHHHTTCSEEEEESC----------CHHHHHHHHHHHHHHCTTSEEEEEECC
T ss_pred HHHHHHHHhCCCCceEEE-EeCCHHHHHHHHHcCCCEEEECCC----------CHHHHHHHHHHhhccCCCceEEEECCC
Confidence 35788888763 46666 5667766 8999999999882 23444455544433 7999999999
Q ss_pred CCHHHHHHHHHhCcCEEEecHHH
Q 017781 286 RRGTDVFKALALGASGIFIGRPV 308 (366)
Q Consensus 286 ~~~~dv~kalalGAd~V~igr~~ 308 (366)
+.+.+.+..+.|+|.+.+|+..
T Consensus 250 -t~eni~~~a~tGVD~IsvGslt 271 (285)
T 1o4u_A 250 -TEENVSLYDFETVDVISSSRLT 271 (285)
T ss_dssp -CTTTGGGGCCTTCCEEEEGGGT
T ss_pred -CHHHHHHHHHcCCCEEEEeHHH
Confidence 6788888888999999999854
|
| >2nql_A AGR_PAT_674P, isomerase/lactonizing enzyme; enolase, structural genomics, protein structure initiative, nysgxrc; 1.80A {Agrobacterium tumefaciens str} PDB: 4dn1_A | Back alignment and structure |
|---|
Probab=96.33 E-value=0.022 Score=55.36 Aligned_cols=116 Identities=16% Similarity=0.089 Sum_probs=85.2
Q ss_pred CCHHHHHHHHHHHHHcCCCEEEEecCCCCCcchhHHHhhhcCCCCccccccccccccCCCccccchhhHHHhhhccCCCC
Q 017781 133 KDRNVVAQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLTLKNFQGLDLGKMDEANDSGLAAYVAGQIDRSL 212 (366)
Q Consensus 133 ~d~~~~~~~l~ra~~~G~~ai~vtvd~p~~g~r~~d~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~ 212 (366)
.+.+.+.+.++++.+.|++++-+++.++ +...
T Consensus 163 ~~~e~~~~~a~~~~~~Gf~~vKik~g~~------------------------------------------------~~~~ 194 (388)
T 2nql_A 163 RTLKARGELAKYWQDRGFNAFKFATPVA------------------------------------------------DDGP 194 (388)
T ss_dssp SSHHHHHHHHHHHHHTTCCEEEEEGGGC------------------------------------------------TTCH
T ss_pred CCHHHHHHHHHHHHHhCCCEEEEeCCCC------------------------------------------------ChHH
Confidence 4677777888888889999987764320 2234
Q ss_pred CHHHHHHHHHhc--CCCEEEEec--cCHHH--------HHcCCcEEEEcCCCccCCCCCcchHHHHHHHHHHcCCCceEE
Q 017781 213 SWKDVKWLQTIT--KLPILVKGV--LTAED--------VQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVF 280 (366)
Q Consensus 213 ~~~~i~~lr~~~--~~pv~vK~v--~~~~d--------~~aGad~I~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~i~vi 280 (366)
.+.++.+|+.+ +.+|.++.- .+.++ .+.|+++|- +. ..+..++.+.++++.+ ++||+
T Consensus 195 -~e~v~avr~a~g~d~~l~vDan~~~~~~~a~~~~~~l~~~~i~~iE-------qP-~~~~d~~~~~~l~~~~--~iPI~ 263 (388)
T 2nql_A 195 -AAEIANLRQVLGPQAKIAADMHWNQTPERALELIAEMQPFDPWFAE-------AP-VWTEDIAGLEKVSKNT--DVPIA 263 (388)
T ss_dssp -HHHHHHHHHHHCTTSEEEEECCSCSCHHHHHHHHHHHGGGCCSCEE-------CC-SCTTCHHHHHHHHTSC--CSCEE
T ss_pred -HHHHHHHHHHhCCCCEEEEECCCCCCHHHHHHHHHHHhhcCCCEEE-------CC-CChhhHHHHHHHHhhC--CCCEE
Confidence 66788888876 578888743 35554 567888774 11 1234677888888776 79999
Q ss_pred EecCCCCHHHHHHHHHhC-cCEEEecHH
Q 017781 281 LDGGVRRGTDVFKALALG-ASGIFIGRP 307 (366)
Q Consensus 281 ~~GGI~~~~dv~kalalG-Ad~V~igr~ 307 (366)
+++.+.+..++.+++..| +|.|++-..
T Consensus 264 ~dE~~~~~~~~~~~i~~~~~d~v~ik~~ 291 (388)
T 2nql_A 264 VGEEWRTHWDMRARIERCRIAIVQPEMG 291 (388)
T ss_dssp ECTTCCSHHHHHHHHTTSCCSEECCCHH
T ss_pred EeCCcCCHHHHHHHHHcCCCCEEEecCC
Confidence 999999999999999987 899999543
|
| >1zco_A 2-dehydro-3-deoxyphosphoheptonate aldolase; arabino-heptulosonate, synthase, shikimate, DAHP, DAH7P, DAH DAH7PS, lyase; HET: PEP; 2.25A {Pyrococcus furiosus} | Back alignment and structure |
|---|
Probab=96.29 E-value=0.14 Score=47.22 Aligned_cols=92 Identities=23% Similarity=0.395 Sum_probs=58.9
Q ss_pred HHHHHHHHHhcCCCEEEEecc--CHHH--------HHcCCcEEEEcCCCccCCC-C--CcchHHHHHHHHHHcCCCceEE
Q 017781 214 WKDVKWLQTITKLPILVKGVL--TAED--------VQAGAAGIIVSNHGARQLD-Y--VPATIMALEEVVKATQGRIPVF 280 (366)
Q Consensus 214 ~~~i~~lr~~~~~pv~vK~v~--~~~d--------~~aGad~I~vs~~gg~~~~-~--~~~~~~~l~~i~~~~~~~i~vi 280 (366)
...++++-+ +++||++|... +.++ ...|.+-+++--.|++... . ....+.+++.+++.. .+||+
T Consensus 120 ~~ll~~~a~-~~kPV~lk~G~~~t~~e~~~Av~~i~~~Gn~~i~L~~RG~~~~~~y~~~~v~L~ai~~lk~~~--~~pVi 196 (262)
T 1zco_A 120 FELLKEVGK-VENPVLLKRGMGNTIQELLYSAEYIMAQGNENVILCERGIRTFETATRFTLDISAVPVVKELS--HLPII 196 (262)
T ss_dssp HHHHHHHTT-SSSCEEEECCTTCCHHHHHHHHHHHHTTTCCCEEEEECCBCCSCCSSSSBCCTTHHHHHHHHB--SSCEE
T ss_pred HHHHHHHHh-cCCcEEEecCCCCCHHHHHHHHHHHHHCCCCeEEEEECCCCCCCCcChhhcCHHHHHHHHhhh--CCCEE
Confidence 345666666 68999999664 6776 5667755555444544321 1 122445677776665 58998
Q ss_pred EecCCCCHH-----H-HHHHHHhCcCEEEecHHH
Q 017781 281 LDGGVRRGT-----D-VFKALALGASGIFIGRPV 308 (366)
Q Consensus 281 ~~GGI~~~~-----d-v~kalalGAd~V~igr~~ 308 (366)
++..=..+. . +..|.++||++++|-+-+
T Consensus 197 ~d~sH~~g~~~~v~~~~~aAva~Ga~Gl~iE~H~ 230 (262)
T 1zco_A 197 VDPSHPAGRRSLVIPLAKAAYAIGADGIMVEVHP 230 (262)
T ss_dssp ECSSTTTCSGGGHHHHHHHHHHTTCSEEEEEBCS
T ss_pred EEcCCCCCccchHHHHHHHHHHcCCCEEEEEecC
Confidence 876443333 4 345778999999999865
|
| >3gnn_A Nicotinate-nucleotide pyrophosphorylase; decode biostructures, ssgcid, niaid, SBRI, UWPPG, glycosyltransferase, transferase, structural genomics; 2.25A {Burkholderia pseudomallei} | Back alignment and structure |
|---|
Probab=96.28 E-value=0.011 Score=55.44 Aligned_cols=81 Identities=23% Similarity=0.370 Sum_probs=60.6
Q ss_pred HHHHHHHHhcC-CCEEEEeccCHHH----HHcCCcEEEEcCCCccCCCCCcchHHHHHHHHHHcCCCceEEEecCCCCHH
Q 017781 215 KDVKWLQTITK-LPILVKGVLTAED----VQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGT 289 (366)
Q Consensus 215 ~~i~~lr~~~~-~pv~vK~v~~~~d----~~aGad~I~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~i~vi~~GGI~~~~ 289 (366)
+.++.+|+..+ .|+.| .+-+.++ .++|+|.|-+.|. +.+.+.++++.+.+++++.++||| +.+
T Consensus 198 ~Av~~~r~~~p~~~ieV-Evdtlde~~eAl~aGaD~I~LDn~----------~~~~l~~av~~i~~~v~ieaSGGI-~~~ 265 (298)
T 3gnn_A 198 EALDAAFALNAEVPVQI-EVETLDQLRTALAHGARSVLLDNF----------TLDMMRDAVRVTEGRAVLEVSGGV-NFD 265 (298)
T ss_dssp HHHHHHHHHC--CCCEE-EESSHHHHHHHHHTTCEEEEEESC----------CHHHHHHHHHHHTTSEEEEEESSC-STT
T ss_pred HHHHHHHHhCCCCCEEE-EeCCHHHHHHHHHcCCCEEEECCC----------CHHHHHHHHHHhCCCCeEEEEcCC-CHH
Confidence 34777887653 44433 3567766 7899999999882 335566666666668999999999 677
Q ss_pred HHHHHHHhCcCEEEecHH
Q 017781 290 DVFKALALGASGIFIGRP 307 (366)
Q Consensus 290 dv~kalalGAd~V~igr~ 307 (366)
.+.+..+.|+|.+.+|+.
T Consensus 266 ~i~~~a~tGVD~isvG~l 283 (298)
T 3gnn_A 266 TVRAIAETGVDRISIGAL 283 (298)
T ss_dssp THHHHHHTTCSEEECGGG
T ss_pred HHHHHHHcCCCEEEECCe
Confidence 788888899999999974
|
| >3w01_A Heptaprenylglyceryl phosphate synthase; biosynthesis, prenyltransferases, enzyme catalysis, transfer; HET: PGE; 1.54A {Staphylococcus aureus} PDB: 3w02_A | Back alignment and structure |
|---|
Probab=96.22 E-value=0.0061 Score=55.42 Aligned_cols=61 Identities=13% Similarity=0.181 Sum_probs=46.6
Q ss_pred CCcEEEEcCCCccCCCCCcchHHHHHHHHHHcCCCceEEEecCCCCHHHHHHHHHhCcCEEEecHHHHH
Q 017781 242 GAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFIGRPVVY 310 (366)
Q Consensus 242 Gad~I~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~i~vi~~GGI~~~~dv~kalalGAd~V~igr~~l~ 310 (366)
|...|.+-. .|. ....+.+.++++.. .++||++-|||++++++.++.. |||+|.+|+++..
T Consensus 159 g~~~vY~e~-sG~-----~g~~~~v~~ir~~~-~~~pv~vGfGI~~~e~a~~~~~-gAD~VVVGSai~~ 219 (235)
T 3w01_A 159 RLPVMYIEY-SGI-----YGDVSKVQAVSEHL-TETQLFYGGGISSEQQATEMAA-IADTIIVGDIIYK 219 (235)
T ss_dssp CCSEEEEEC-TTS-----CCCHHHHHHHHTTC-SSSEEEEESCCCSHHHHHHHHT-TSSEEEECTHHHH
T ss_pred CCCEEEEec-CCC-----cCCHHHHHHHHHhc-CCCCEEEECCcCCHHHHHHHHc-CCCEEEECCceec
Confidence 556666544 232 12567788887655 2689999999999999988776 9999999999875
|
| >1qpo_A Quinolinate acid phosphoribosyl transferase; type II prtase, de novo NAD biosynthesis, PRPP, phosphoribos transferase; 2.40A {Mycobacterium tuberculosis H37RV} SCOP: c.1.17.1 d.41.2.1 PDB: 1qpn_A 1qpq_A* 1qpr_A* | Back alignment and structure |
|---|
Probab=96.18 E-value=0.014 Score=54.70 Aligned_cols=82 Identities=15% Similarity=0.193 Sum_probs=59.9
Q ss_pred HHHHHHHHhcC-CCEEEEeccCHHH----HHcCCcEEEEcCCCccCCCCCcchHHHHHHHHHHcCC---CceEEEecCCC
Q 017781 215 KDVKWLQTITK-LPILVKGVLTAED----VQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQG---RIPVFLDGGVR 286 (366)
Q Consensus 215 ~~i~~lr~~~~-~pv~vK~v~~~~d----~~aGad~I~vs~~gg~~~~~~~~~~~~l~~i~~~~~~---~i~vi~~GGI~ 286 (366)
+.++..|+..+ .|+.| .+.+.++ .++|+|.|.++|. +.+.+.++++.+++ ++++.++|||
T Consensus 183 ~av~~ar~~~~~~~I~V-ev~t~eea~eal~aGaD~I~LDn~----------~~~~~~~~v~~l~~~~~~v~ieaSGGI- 250 (284)
T 1qpo_A 183 DALRAVRNAAPDLPCEV-EVDSLEQLDAVLPEKPELILLDNF----------AVWQTQTAVQRRDSRAPTVMLESSGGL- 250 (284)
T ss_dssp HHHHHHHHHCTTSCEEE-EESSHHHHHHHGGGCCSEEEEETC----------CHHHHHHHHHHHHHHCTTCEEEEESSC-
T ss_pred HHHHHHHHhCCCCCEEE-EeCCHHHHHHHHHcCCCEEEECCC----------CHHHHHHHHHHhhccCCCeEEEEECCC-
Confidence 45788888753 25555 5667766 8899999999883 22334444443332 7899999999
Q ss_pred CHHHHHHHHHhCcCEEEecHHH
Q 017781 287 RGTDVFKALALGASGIFIGRPV 308 (366)
Q Consensus 287 ~~~dv~kalalGAd~V~igr~~ 308 (366)
+.+.+.+....|+|.+.+|+..
T Consensus 251 t~~~i~~~a~tGVD~isvG~l~ 272 (284)
T 1qpo_A 251 SLQTAATYAETGVDYLAVGALT 272 (284)
T ss_dssp CTTTHHHHHHTTCSEEECGGGT
T ss_pred CHHHHHHHHhcCCCEEEECHHH
Confidence 6888999999999999999843
|
| >1rvk_A Isomerase/lactonizing enzyme; enolase superfamily, MR.GI-17937161, NYSGXRC, target T1522, structural genomics, PSI; 1.70A {Agrobacterium tumefaciens} SCOP: c.1.11.2 d.54.1.1 | Back alignment and structure |
|---|
Probab=96.16 E-value=0.055 Score=52.36 Aligned_cols=123 Identities=12% Similarity=0.136 Sum_probs=89.3
Q ss_pred CCHHHHHHHHHHHHHcCCCEEEEecCCCCCcchhHHHhhhcCCCCccccccccccccCCCccccchhhHHHhhhccCCCC
Q 017781 133 KDRNVVAQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLTLKNFQGLDLGKMDEANDSGLAAYVAGQIDRSL 212 (366)
Q Consensus 133 ~d~~~~~~~l~ra~~~G~~ai~vtvd~p~~g~r~~d~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~ 212 (366)
.+.+.+.+.++++.+.|++++-+.+.++..+ + ..+...
T Consensus 148 ~~~e~~~~~a~~~~~~Gf~~iKik~g~~~~~---------~---------------------------------~~~~~~ 185 (382)
T 1rvk_A 148 ATPEDYGRFAETLVKRGYKGIKLHTWMPPVS---------W---------------------------------APDVKM 185 (382)
T ss_dssp SSHHHHHHHHHHHHHHTCSEEEEECCCTTST---------T---------------------------------CCCHHH
T ss_pred CCHHHHHHHHHHHHHCCCCEEEEcCCcCccc---------c---------------------------------ccchHH
Confidence 4677777788888889999999887653210 0 001223
Q ss_pred CHHHHHHHHHhc--CCCEEEEec--cCHHH--------HHcCCcEEEEcCCCccCCCCCcchHHHHHHHHHHcCCCceEE
Q 017781 213 SWKDVKWLQTIT--KLPILVKGV--LTAED--------VQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVF 280 (366)
Q Consensus 213 ~~~~i~~lr~~~--~~pv~vK~v--~~~~d--------~~aGad~I~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~i~vi 280 (366)
..+.++.+|+.+ +.+|.++.- .+.++ .+.|+++|- +. ..+..++.+.++++.+ ++||+
T Consensus 186 ~~e~v~avr~a~g~d~~l~vDan~~~~~~~a~~~~~~l~~~~i~~iE-------~P-~~~~~~~~~~~l~~~~--~iPIa 255 (382)
T 1rvk_A 186 DLKACAAVREAVGPDIRLMIDAFHWYSRTDALALGRGLEKLGFDWIE-------EP-MDEQSLSSYKWLSDNL--DIPVV 255 (382)
T ss_dssp HHHHHHHHHHHHCTTSEEEEECCTTCCHHHHHHHHHHHHTTTCSEEE-------CC-SCTTCHHHHHHHHHHC--SSCEE
T ss_pred HHHHHHHHHHHhCCCCeEEEECCCCCCHHHHHHHHHHHHhcCCCEEe-------CC-CChhhHHHHHHHHhhC--CCCEE
Confidence 456788899877 588888843 45554 667888774 11 1234678888888887 79999
Q ss_pred EecCCCC-HHHHHHHHHhC-cCEEEecHH
Q 017781 281 LDGGVRR-GTDVFKALALG-ASGIFIGRP 307 (366)
Q Consensus 281 ~~GGI~~-~~dv~kalalG-Ad~V~igr~ 307 (366)
+++.+.+ ..|+.+++..| +|.|++--.
T Consensus 256 ~dE~~~~~~~~~~~~i~~~~~d~v~ik~~ 284 (382)
T 1rvk_A 256 GPESAAGKHWHRAEWIKAGACDILRTGVN 284 (382)
T ss_dssp ECSSCSSHHHHHHHHHHTTCCSEEEECHH
T ss_pred EeCCccCcHHHHHHHHHcCCCCEEeeCch
Confidence 9999999 99999999987 899999654
|
| >2qgy_A Enolase from the environmental genome shotgun sequencing of the sargasso SEA; structural genomics, unknown function, PSI-2; 1.80A {Environmental sample} | Back alignment and structure |
|---|
Probab=96.11 E-value=0.046 Score=53.19 Aligned_cols=115 Identities=14% Similarity=0.042 Sum_probs=84.4
Q ss_pred CCHHHHHHHHHHHHHcCCCEEEEecCCCCCcchhHHHhhhcCCCCccccccccccccCCCccccchhhHHHhhhccCCCC
Q 017781 133 KDRNVVAQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLTLKNFQGLDLGKMDEANDSGLAAYVAGQIDRSL 212 (366)
Q Consensus 133 ~d~~~~~~~l~ra~~~G~~ai~vtvd~p~~g~r~~d~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~ 212 (366)
.+++.+.+.++++.+.|++++-+.+... .+..
T Consensus 148 ~~~~~~~~~a~~~~~~Gf~~vKik~g~~------------------------------------------------~~~~ 179 (391)
T 2qgy_A 148 KDTNDYLRQIEKFYGKKYGGIKIYPMLD------------------------------------------------SLSI 179 (391)
T ss_dssp CCHHHHHHHHHHHHHTTCSCEEECCCCS------------------------------------------------SHHH
T ss_pred CCHHHHHHHHHHHHHcCCCEEEEccCCC------------------------------------------------hHHH
Confidence 5677777888888889999987643210 0122
Q ss_pred CHHHHHHHHHhc--CCCEEEEec--cCHHH--------HHcCCcEEEEcCCCccCCCCCcchHHHHHHHHHHcCCCceEE
Q 017781 213 SWKDVKWLQTIT--KLPILVKGV--LTAED--------VQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVF 280 (366)
Q Consensus 213 ~~~~i~~lr~~~--~~pv~vK~v--~~~~d--------~~aGad~I~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~i~vi 280 (366)
..+.++.+|+.+ +.+|.++.- .+.++ .+.|+++|-- . ..+..++.+.++++.+ ++||+
T Consensus 180 ~~e~v~avR~a~G~d~~l~vDan~~~~~~~a~~~~~~l~~~~i~~iEq-------P-~~~~d~~~~~~l~~~~--~iPIa 249 (391)
T 2qgy_A 180 SIQFVEKVREIVGDELPLMLDLAVPEDLDQTKSFLKEVSSFNPYWIEE-------P-VDGENISLLTEIKNTF--NMKVV 249 (391)
T ss_dssp HHHHHHHHHHHHCSSSCEEEECCCCSCHHHHHHHHHHHGGGCCSEEEC-------S-SCTTCHHHHHHHHHHC--SSCEE
T ss_pred HHHHHHHHHHHhCCCCEEEEEcCCCCCHHHHHHHHHHHHhcCCCeEeC-------C-CChhhHHHHHHHHhhC--CCCEE
Confidence 456788888876 578888843 45554 6678888741 1 1234678888888887 79999
Q ss_pred EecCCCCHHHHHHHHHhC-cCEEEec
Q 017781 281 LDGGVRRGTDVFKALALG-ASGIFIG 305 (366)
Q Consensus 281 ~~GGI~~~~dv~kalalG-Ad~V~ig 305 (366)
+++.+.+..++.+++..| +|.|++-
T Consensus 250 ~dE~~~~~~~~~~~i~~~~~d~v~ik 275 (391)
T 2qgy_A 250 TGEKQSGLVHFRELISRNAADIFNPD 275 (391)
T ss_dssp ECTTCCSHHHHHHHHHTTCCSEECCB
T ss_pred EcCCcCCHHHHHHHHHcCCCCEEEEC
Confidence 999999999999999987 8999984
|
| >2og9_A Mandelate racemase/muconate lactonizing enzyme; NYSGXRC, protein structure initiative (PSI) II, PSI-2, 9382A mandelate racemase; 1.90A {Polaromonas SP} PDB: 3cb3_A* | Back alignment and structure |
|---|
Probab=96.09 E-value=0.04 Score=53.66 Aligned_cols=116 Identities=12% Similarity=0.072 Sum_probs=84.2
Q ss_pred CHHHHHHHHHHHHHcCCCEEEEecCCCCCcchhHHHhhhcCCCCccccccccccccCCCccccchhhHHHhhhccCCCCC
Q 017781 134 DRNVVAQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLTLKNFQGLDLGKMDEANDSGLAAYVAGQIDRSLS 213 (366)
Q Consensus 134 d~~~~~~~l~ra~~~G~~ai~vtvd~p~~g~r~~d~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~ 213 (366)
+.+.+.+.++++.++|++++-+.+..+ +....
T Consensus 162 ~~e~~~~~a~~~~~~Gf~~vKik~g~~------------------------------------------------~~~~~ 193 (393)
T 2og9_A 162 PIDQLMVNASASIERGIGGIKLKVGQP------------------------------------------------DGALD 193 (393)
T ss_dssp CHHHHHHHHHHHHHTTCCCEEEECCCS------------------------------------------------CHHHH
T ss_pred CHHHHHHHHHHHHHcCCCEEEEecCCC------------------------------------------------CHHHH
Confidence 677777788888889999987754311 11224
Q ss_pred HHHHHHHHHhc--CCCEEEEec--cCHHH--------HHcCCcEEEEcCCCccCCCCCcchHHHHHHHHHHcCCCceEEE
Q 017781 214 WKDVKWLQTIT--KLPILVKGV--LTAED--------VQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFL 281 (366)
Q Consensus 214 ~~~i~~lr~~~--~~pv~vK~v--~~~~d--------~~aGad~I~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~i~vi~ 281 (366)
.+.++.+|+.+ +.+|.+..- .+.++ .+.|+++|- +. ..+..++.+.++++.+ ++||++
T Consensus 194 ~e~v~avR~avg~d~~l~vDan~~~~~~~a~~~~~~l~~~~i~~iE-------~P-~~~~~~~~~~~l~~~~--~iPIa~ 263 (393)
T 2og9_A 194 IARVTAVRKHLGDAVPLMVDANQQWDRPTAQRMCRIFEPFNLVWIE-------EP-LDAYDHEGHAALALQF--DTPIAT 263 (393)
T ss_dssp HHHHHHHHHHHCTTSCEEEECTTCCCHHHHHHHHHHHGGGCCSCEE-------CC-SCTTCHHHHHHHHHHC--SSCEEE
T ss_pred HHHHHHHHHHcCCCCEEEEECCCCCCHHHHHHHHHHHHhhCCCEEE-------CC-CCcccHHHHHHHHHhC--CCCEEe
Confidence 56678888876 578888732 35554 567888774 11 1234677888888887 799999
Q ss_pred ecCCCCHHHHHHHHHhC-cCEEEecHH
Q 017781 282 DGGVRRGTDVFKALALG-ASGIFIGRP 307 (366)
Q Consensus 282 ~GGI~~~~dv~kalalG-Ad~V~igr~ 307 (366)
++.+.+..++.+++..| +|.|++--.
T Consensus 264 dE~~~~~~~~~~~i~~~~~d~v~ik~~ 290 (393)
T 2og9_A 264 GEMLTSAAEHGDLIRHRAADYLMPDAP 290 (393)
T ss_dssp CTTCCSHHHHHHHHHTTCCSEECCCHH
T ss_pred CCCcCCHHHHHHHHHCCCCCEEeeCcc
Confidence 99999999999999988 899998643
|
| >2hzg_A Mandelate racemase/muconate lactonizing enzyme/EN superfamily; structural genomics, predicted mandelate racemase, PSI; 2.02A {Rhodobacter sphaeroides} | Back alignment and structure |
|---|
Probab=96.01 E-value=0.28 Score=47.69 Aligned_cols=120 Identities=13% Similarity=0.053 Sum_probs=87.4
Q ss_pred cCCHHHHHHHHHHHHHcCCCEEEEecCCCCCcchhHHHhhhcCCCCccccccccccccCCCccccchhhHHHhhhccCC-
Q 017781 132 YKDRNVVAQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLTLKNFQGLDLGKMDEANDSGLAAYVAGQIDR- 210 (366)
Q Consensus 132 ~~d~~~~~~~l~ra~~~G~~ai~vtvd~p~~g~r~~d~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~- 210 (366)
..+.+.+.+.++++.+.|++++-+.. +|.. .+.
T Consensus 143 ~~~~~~~~~~a~~~~~~Gf~~iKik~-spvG---------------------------------------------~~~~ 176 (401)
T 2hzg_A 143 GDTPQETLERARAARRDGFAAVKFGW-GPIG---------------------------------------------RGTV 176 (401)
T ss_dssp CSSHHHHHHHHHHHHHTTCSEEEEES-TTTT---------------------------------------------SSCH
T ss_pred CCCHHHHHHHHHHHHHhCCCeEEEcC-CCCC---------------------------------------------CCHH
Confidence 35777778888888899999998764 2210 011
Q ss_pred CCCHHHHHHHHHhc--CCCEEEEec--c--CHHH--------HHcCCcEEEEcCCCccCCCCCcchHHHHHHHHH-HcCC
Q 017781 211 SLSWKDVKWLQTIT--KLPILVKGV--L--TAED--------VQAGAAGIIVSNHGARQLDYVPATIMALEEVVK-ATQG 275 (366)
Q Consensus 211 ~~~~~~i~~lr~~~--~~pv~vK~v--~--~~~d--------~~aGad~I~vs~~gg~~~~~~~~~~~~l~~i~~-~~~~ 275 (366)
....+.++.+|+.+ +++|.++.- . +.++ .+.|++.|- +. ..+..++.+.++++ .+
T Consensus 177 ~~~~e~v~avr~a~G~d~~l~vDan~~~~~~~~~a~~~~~~l~~~~i~~iE-------qP-~~~~d~~~~~~l~~~~~-- 246 (401)
T 2hzg_A 177 AADADQIMAAREGLGPDGDLMVDVGQIFGEDVEAAAARLPTLDAAGVLWLE-------EP-FDAGALAAHAALAGRGA-- 246 (401)
T ss_dssp HHHHHHHHHHHHHHCSSSEEEEECTTTTTTCHHHHHTTHHHHHHTTCSEEE-------CC-SCTTCHHHHHHHHTTCC--
T ss_pred HHHHHHHHHHHHHhCCCCeEEEECCCCCCCCHHHHHHHHHHHHhcCCCEEE-------CC-CCccCHHHHHHHHhhCC--
Confidence 22456788888887 578888843 4 5555 677888874 11 12346778888877 66
Q ss_pred CceEEEecCCCCHHHHHHHHHhC-cCEEEecHH
Q 017781 276 RIPVFLDGGVRRGTDVFKALALG-ASGIFIGRP 307 (366)
Q Consensus 276 ~i~vi~~GGI~~~~dv~kalalG-Ad~V~igr~ 307 (366)
++||++++.+.+..++.+++..| +|.|++-..
T Consensus 247 ~iPI~~dE~~~~~~~~~~~i~~~~~d~v~ik~~ 279 (401)
T 2hzg_A 247 RVRIAGGEAAHNFHMAQHLMDYGRIGFIQIDCG 279 (401)
T ss_dssp SSEEEECTTCSSHHHHHHHHHHSCCSEEEECHH
T ss_pred CCCEEecCCcCCHHHHHHHHHCCCCCEEEeCcc
Confidence 79999999999999999999987 899999643
|
| >2bdq_A Copper homeostasis protein CUTC; alpha beta protein, structural genomics, PSI, protein structure initiative; 2.30A {Streptococcus agalactiae} | Back alignment and structure |
|---|
Probab=95.98 E-value=0.099 Score=46.98 Aligned_cols=126 Identities=17% Similarity=0.239 Sum_probs=79.1
Q ss_pred eecCCHHHHHHHHHHHHHcCCCEEEEecCCCCCcchhHHHhhhcCCCCccccccccccccCCCccccchhhHHHhhhccC
Q 017781 130 YVYKDRNVVAQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLTLKNFQGLDLGKMDEANDSGLAAYVAGQID 209 (366)
Q Consensus 130 y~~~d~~~~~~~l~ra~~~G~~ai~vtvd~p~~g~r~~d~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d 209 (366)
|...+.+.+.+-++.++++|++.+++.+-.+ |
T Consensus 70 Ys~~E~~~M~~Di~~~~~~GadGvV~G~Lt~------------------------------------------------d 101 (224)
T 2bdq_A 70 YNDLELRIMEEDILRAVELESDALVLGILTS------------------------------------------------N 101 (224)
T ss_dssp CCHHHHHHHHHHHHHHHHTTCSEEEECCBCT------------------------------------------------T
T ss_pred CCHHHHHHHHHHHHHHHHcCCCEEEEeeECC------------------------------------------------C
Confidence 5455667888889999999999999855322 2
Q ss_pred CCCCHHHHHHHHHhc-CCCEEEEec------cCHHH-----HHcCCcEEEEcCCCccCCCCCcchHHHHHHHHHHcCCCc
Q 017781 210 RSLSWKDVKWLQTIT-KLPILVKGV------LTAED-----VQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRI 277 (366)
Q Consensus 210 ~~~~~~~i~~lr~~~-~~pv~vK~v------~~~~d-----~~aGad~I~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~i 277 (366)
...+.+.++++.+.. +.|+.+=-. .++.+ .+.|+|.|--|+ |..-......++.|+++.+...+++
T Consensus 102 g~iD~~~~~~Li~~a~~~~vTFHRAFD~~~~~d~~~ale~L~~lGv~rILTSG--~~~~~~a~~g~~~L~~Lv~~a~~ri 179 (224)
T 2bdq_A 102 NHIDTEAIEQLLPATQGLPLVFHMAFDVIPKSDQKKSIDQLVALGFTRILLHG--SSNGEPIIENIKHIKALVEYANNRI 179 (224)
T ss_dssp SSBCHHHHHHHHHHHTTCCEEECGGGGGSCTTTHHHHHHHHHHTTCCEEEECS--CSSCCCGGGGHHHHHHHHHHHTTSS
T ss_pred CCcCHHHHHHHHHHhCCCeEEEECchhccCCcCHHHHHHHHHHcCCCEEECCC--CCCCCcHHHHHHHHHHHHHhhCCCe
Confidence 234455555555443 445444321 12221 778999997655 3211113345667777776656689
Q ss_pred eEEEecCCCCHHHHHHHH-HhCcCEEEecH
Q 017781 278 PVFLDGGVRRGTDVFKAL-ALGASGIFIGR 306 (366)
Q Consensus 278 ~vi~~GGI~~~~dv~kal-alGAd~V~igr 306 (366)
.|++-|||+ .+.+.+-+ .+|++.+-...
T Consensus 180 ~Im~GgGV~-~~Ni~~l~~~tGv~e~H~s~ 208 (224)
T 2bdq_A 180 EIMVGGGVT-AENYQYICQETGVKQAHGTR 208 (224)
T ss_dssp EEEECSSCC-TTTHHHHHHHHTCCEEEETT
T ss_pred EEEeCCCCC-HHHHHHHHHhhCCCEEcccc
Confidence 999999996 35555555 47999988643
|
| >4e38_A Keto-hydroxyglutarate-aldolase/keto-deoxy-phospho aldolase; lyase; 1.64A {Vibrionales bacterium swat-3} | Back alignment and structure |
|---|
Probab=95.98 E-value=0.03 Score=50.82 Aligned_cols=77 Identities=17% Similarity=0.231 Sum_probs=55.0
Q ss_pred CHHHHHHHHHhcCCCEEEE-eccCHHH----HHcCCcEEEEcCCCccCCCCCcchHHHHHHHHHHcCCCceEEEecCCCC
Q 017781 213 SWKDVKWLQTITKLPILVK-GVLTAED----VQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRR 287 (366)
Q Consensus 213 ~~~~i~~lr~~~~~pv~vK-~v~~~~d----~~aGad~I~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~i~vi~~GGI~~ 287 (366)
..+.|+++++.++..++-. .+++.++ .++|||+|+.-+ .+.+.+..+++. .+|++. |+.|
T Consensus 72 a~e~I~~l~~~~~~~~iGaGTVlt~~~a~~Ai~AGA~fIvsP~----------~~~~vi~~~~~~---gi~~ip--Gv~T 136 (232)
T 4e38_A 72 AVEAIRLLRQAQPEMLIGAGTILNGEQALAAKEAGATFVVSPG----------FNPNTVRACQEI---GIDIVP--GVNN 136 (232)
T ss_dssp HHHHHHHHHHHCTTCEEEEECCCSHHHHHHHHHHTCSEEECSS----------CCHHHHHHHHHH---TCEEEC--EECS
T ss_pred HHHHHHHHHHhCCCCEEeECCcCCHHHHHHHHHcCCCEEEeCC----------CCHHHHHHHHHc---CCCEEc--CCCC
Confidence 3467999999875444433 3567666 999999996321 233444444432 678777 5889
Q ss_pred HHHHHHHHHhCcCEEEe
Q 017781 288 GTDVFKALALGASGIFI 304 (366)
Q Consensus 288 ~~dv~kalalGAd~V~i 304 (366)
++++.+|+.+|||.|.+
T Consensus 137 ptEi~~A~~~Gad~vK~ 153 (232)
T 4e38_A 137 PSTVEAALEMGLTTLKF 153 (232)
T ss_dssp HHHHHHHHHTTCCEEEE
T ss_pred HHHHHHHHHcCCCEEEE
Confidence 99999999999999987
|
| >1nu5_A Chloromuconate cycloisomerase; enzyme, dehalogenation; 1.95A {Pseudomonas SP} SCOP: c.1.11.2 d.54.1.1 | Back alignment and structure |
|---|
Probab=95.89 E-value=0.076 Score=51.09 Aligned_cols=117 Identities=9% Similarity=0.050 Sum_probs=83.3
Q ss_pred CCHHHHHHHHHHHHH-cCCCEEEEecCCCCCcchhHHHhhhcCCCCccccccccccccCCCccccchhhHHHhhhccCCC
Q 017781 133 KDRNVVAQLVRRAER-AGFKAIALTVDTPRLGRREADIKNRFTLPPFLTLKNFQGLDLGKMDEANDSGLAAYVAGQIDRS 211 (366)
Q Consensus 133 ~d~~~~~~~l~ra~~-~G~~ai~vtvd~p~~g~r~~d~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~ 211 (366)
.+++.+.+.++++.+ .|++++-+.+.++. ..
T Consensus 141 ~~~e~~~~~a~~~~~~~Gf~~iKik~g~~~------------------------------------------------~~ 172 (370)
T 1nu5_A 141 GDTARDIDSALEMIETRRHNRFKVKLGART------------------------------------------------PA 172 (370)
T ss_dssp SCHHHHHHHHHHHHHTTSCSEEEEECSSSC------------------------------------------------HH
T ss_pred CCHHHHHHHHHHHHHhCCccEEEEecCCCC------------------------------------------------hH
Confidence 467777777888888 99999887664320 01
Q ss_pred CCHHHHHHHHHhc--CCCEEEEec--cCHHH--------HHcCCcEEEEcCCCccCCCCCcchHHHHHHHHHHcCCCceE
Q 017781 212 LSWKDVKWLQTIT--KLPILVKGV--LTAED--------VQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPV 279 (366)
Q Consensus 212 ~~~~~i~~lr~~~--~~pv~vK~v--~~~~d--------~~aGad~I~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~i~v 279 (366)
...+.++.+|+.+ +.++.+..- .+.++ .+.|+++|- +. ..+..++.+.++++.+ ++||
T Consensus 173 ~~~e~v~avr~a~g~~~~l~vDan~~~~~~~a~~~~~~l~~~~i~~iE-------qP-~~~~~~~~~~~l~~~~--~ipI 242 (370)
T 1nu5_A 173 QDLEHIRSIVKAVGDRASVRVDVNQGWDEQTASIWIPRLEEAGVELVE-------QP-VPRANFGALRRLTEQN--GVAI 242 (370)
T ss_dssp HHHHHHHHHHHHHGGGCEEEEECTTCCCHHHHHHHHHHHHHHTCCEEE-------CC-SCTTCHHHHHHHHHHC--SSEE
T ss_pred HHHHHHHHHHHhcCCCCEEEEECCCCCCHHHHHHHHHHHHhcCcceEe-------CC-CCcccHHHHHHHHHhC--CCCE
Confidence 2345677777765 366777633 34444 567888774 11 1234678888888887 7999
Q ss_pred EEecCCCCHHHHHHHHHhC-cCEEEecHH
Q 017781 280 FLDGGVRRGTDVFKALALG-ASGIFIGRP 307 (366)
Q Consensus 280 i~~GGI~~~~dv~kalalG-Ad~V~igr~ 307 (366)
++++.+.+..|+.+++..| +|.|++--.
T Consensus 243 a~dE~~~~~~~~~~~i~~~~~d~v~ik~~ 271 (370)
T 1nu5_A 243 LADESLSSLSSAFELARDHAVDAFSLKLC 271 (370)
T ss_dssp EESTTCCSHHHHHHHHHTTCCSEEEECHH
T ss_pred EeCCCCCCHHHHHHHHHhCCCCEEEEchh
Confidence 9999999999999999987 899999643
|
| >2rdx_A Mandelate racemase/muconate lactonizing enzyme, P; enolase, structural genomics, PSI, protein structu initiative, nysgrc; 2.00A {Roseovarius nubinhibens} | Back alignment and structure |
|---|
Probab=95.83 E-value=0.069 Score=51.67 Aligned_cols=112 Identities=11% Similarity=0.054 Sum_probs=80.7
Q ss_pred CCHHHHHHHHHHHHHcCCCEEEEecCCCCCcchhHHHhhhcCCCCccccccccccccCCCccccchhhHHHhhhccCCCC
Q 017781 133 KDRNVVAQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLTLKNFQGLDLGKMDEANDSGLAAYVAGQIDRSL 212 (366)
Q Consensus 133 ~d~~~~~~~l~ra~~~G~~ai~vtvd~p~~g~r~~d~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~ 212 (366)
.+.+.+.+.++++.+.|++++-+++... ...
T Consensus 144 ~~~~~~~~~a~~~~~~Gf~~iKik~g~~-------------------------------------------------~~~ 174 (379)
T 2rdx_A 144 RSEAETRAELARHRAAGYRQFQIKVGAD-------------------------------------------------WQS 174 (379)
T ss_dssp SCSHHHHHHHHHHHHTTCCEEEEECCSC-------------------------------------------------HHH
T ss_pred CCHHHHHHHHHHHHHcCCCEEEEeccCC-------------------------------------------------HHH
Confidence 4677778888888899999998765420 012
Q ss_pred CHHHHHHHHHhc--CCCEEEEec--cCHHH--------HHcCCcEEEEcCCCccCCCCCcchHHHHHHHHHHcCCCceEE
Q 017781 213 SWKDVKWLQTIT--KLPILVKGV--LTAED--------VQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVF 280 (366)
Q Consensus 213 ~~~~i~~lr~~~--~~pv~vK~v--~~~~d--------~~aGad~I~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~i~vi 280 (366)
..+.++.+|+.+ +.||.++.- .+.++ .+.|+ +|- +. -+ .++.+.++++.+ ++||+
T Consensus 175 ~~e~v~avr~a~g~d~~l~vDan~~~~~~~a~~~~~~l~~~~i-~iE-------~P--~~-~~~~~~~l~~~~--~iPI~ 241 (379)
T 2rdx_A 175 DIDRIRACLPLLEPGEKAMADANQGWRVDNAIRLARATRDLDY-ILE-------QP--CR-SYEECQQVRRVA--DQPMK 241 (379)
T ss_dssp HHHHHHHHGGGSCTTCEEEEECTTCSCHHHHHHHHHHTTTSCC-EEE-------CC--SS-SHHHHHHHHTTC--CSCEE
T ss_pred HHHHHHHHHHhcCCCCEEEEECCCCCCHHHHHHHHHHHHhCCe-EEe-------CC--cC-CHHHHHHHHhhC--CCCEE
Confidence 345677777776 467777733 34444 45676 553 11 11 677888888776 79999
Q ss_pred EecCCCCHHHHHHHHHhC-cCEEEecH
Q 017781 281 LDGGVRRGTDVFKALALG-ASGIFIGR 306 (366)
Q Consensus 281 ~~GGI~~~~dv~kalalG-Ad~V~igr 306 (366)
+++.+.+..|+.+++..| +|.|++-.
T Consensus 242 ~de~i~~~~~~~~~i~~~~~d~v~ik~ 268 (379)
T 2rdx_A 242 LDECVTGLHMAQRIVADRGAEICCLKI 268 (379)
T ss_dssp ECTTCCSHHHHHHHHHHTCCSEEEEET
T ss_pred EeCCcCCHHHHHHHHHcCCCCEEEEec
Confidence 999999999999999987 89999954
|
| >1jvn_A Glutamine, bifunctional histidine biosynthesis protein hishf; substrate channeling, amidotransferase, TIM-barrel AS A SUBS tunnel; HET: 143; 2.10A {Saccharomyces cerevisiae} SCOP: c.1.2.1 c.23.16.1 PDB: 1ox4_B* 1ox5_A* 1ox6_A 1ox4_A | Back alignment and structure |
|---|
Probab=95.79 E-value=0.0069 Score=61.97 Aligned_cols=70 Identities=21% Similarity=0.254 Sum_probs=52.6
Q ss_pred HHcCCcEEEEcCCCccC-C-CCCcchHHHHHHHHHHcCCCceEEEecCCCCH-----------HHHHHHHHhCcCEEEec
Q 017781 239 VQAGAAGIIVSNHGARQ-L-DYVPATIMALEEVVKATQGRIPVFLDGGVRRG-----------TDVFKALALGASGIFIG 305 (366)
Q Consensus 239 ~~aGad~I~vs~~gg~~-~-~~~~~~~~~l~~i~~~~~~~i~vi~~GGI~~~-----------~dv~kalalGAd~V~ig 305 (366)
.+.|||.+++.+-.+.. . .......+.+.++++.+ .+||++.|||++. +++.+.+.+|||.|.||
T Consensus 290 ~~~Ga~~l~~~dl~~~~~~~~~~~~~~~~i~~i~~~~--~ipi~vgGGIr~~~d~~~~~~~~~~~a~~~l~aGad~V~ig 367 (555)
T 1jvn_A 290 YQQGADEVTFLNITSFRDCPLKDTPMLEVLKQAAKTV--FVPLTVGGGIKDIVDVDGTKIPALEVASLYFRSGADKVSIG 367 (555)
T ss_dssp HHTTCSEEEEEEEC---CCCGGGCHHHHHHHHHTTTC--CSCEEEESSCSCEECTTCCEECHHHHHHHHHHHTCSEEEEC
T ss_pred HHcCCCEEEEEeCCccccccCCCchHHHHHHHHHhhC--CCcEEEeCccccchhcccccchHHHHHHHHHHcCCCEEEEC
Confidence 77899999877643311 0 01233577788777766 7999999999998 44999999999999999
Q ss_pred HHHHH
Q 017781 306 RPVVY 310 (366)
Q Consensus 306 r~~l~ 310 (366)
+..+.
T Consensus 368 t~~~~ 372 (555)
T 1jvn_A 368 TDAVY 372 (555)
T ss_dssp HHHHH
T ss_pred CHHhh
Confidence 98754
|
| >3nl6_A Thiamine biosynthetic bifunctional enzyme; thiamin biosynthesis, eukaryoyes, transferase; HET: TPS ACP; 2.61A {Candida glabrata} PDB: 3nl2_A* 3nl5_A* 3nl3_A* 3nm3_A* 3nm1_A* | Back alignment and structure |
|---|
Probab=95.78 E-value=0.08 Score=53.88 Aligned_cols=78 Identities=17% Similarity=0.103 Sum_probs=55.7
Q ss_pred eccCHHH----HHcC---CcEEEEcCCCccC--CCC--CcchHHHHHHHHHHc----CCCceEEEecCCCCHHHHHHHHH
Q 017781 232 GVLTAED----VQAG---AAGIIVSNHGARQ--LDY--VPATIMALEEVVKAT----QGRIPVFLDGGVRRGTDVFKALA 296 (366)
Q Consensus 232 ~v~~~~d----~~aG---ad~I~vs~~gg~~--~~~--~~~~~~~l~~i~~~~----~~~i~vi~~GGI~~~~dv~kala 296 (366)
-+.+.++ .+.| +|+|.++.-.-+. .+. .+..++.+.++++.+ ..++|+++.||| +.+++.+.++
T Consensus 114 S~ht~eea~~A~~~G~~~aDYv~~Gpvf~T~tK~~~~~~~~G~~~l~~i~~~~~~~~~~~iPvvAIGGI-~~~ni~~v~~ 192 (540)
T 3nl6_A 114 SVGFPEEVDELSKMGPDMVDYIGVGTLFPTLTKKNPKKAPMGTAGAIRVLDALERNNAHWCRTVGIGGL-HPDNIERVLY 192 (540)
T ss_dssp EECSHHHHHHHHHTCC--CCEEEESCCSCCCCCC----CCCHHHHHHHHHHHHHHTTCTTCEEEEESSC-CTTTHHHHHH
T ss_pred ECCCHHHHHHHHHcCCCCCCEEEEcCCCCCCCCCCcCCCCCCHHHHHHHHHHHHhhccCCCCEEEEcCC-CHHHHHHHHH
Confidence 4467776 7789 9999986532211 111 123466777776654 137999999999 7899999998
Q ss_pred --------hCcCEEEecHHHHH
Q 017781 297 --------LGASGIFIGRPVVY 310 (366)
Q Consensus 297 --------lGAd~V~igr~~l~ 310 (366)
.|||+|.+++.++.
T Consensus 193 ~~~~~g~~~GadgvAVvsaI~~ 214 (540)
T 3nl6_A 193 QCVSSNGKRSLDGICVVSDIIA 214 (540)
T ss_dssp HCBCTTSSCBCSCEEESHHHHT
T ss_pred hhcccccccCceEEEEeHHHhc
Confidence 89999999998864
|
| >3ozy_A Putative mandelate racemase; beta-alpha barrel, enolase superfamily member, M-xylarate, U function; HET: DXL; 1.30A {Bordetella bronchiseptica} PDB: 3ozm_A* 3h12_A 3op2_A* | Back alignment and structure |
|---|
Probab=95.75 E-value=0.054 Score=52.72 Aligned_cols=116 Identities=13% Similarity=0.056 Sum_probs=84.5
Q ss_pred cCCHHHHHHHHHHHHHcCCCEEEEecCCCCCcchhHHHhhhcCCCCccccccccccccCCCccccchhhHHHhhhccCCC
Q 017781 132 YKDRNVVAQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLTLKNFQGLDLGKMDEANDSGLAAYVAGQIDRS 211 (366)
Q Consensus 132 ~~d~~~~~~~l~ra~~~G~~ai~vtvd~p~~g~r~~d~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~ 211 (366)
..+++.+.+.++++.+.|++++-+.+++. +.
T Consensus 149 ~~~~e~~~~~a~~~~~~G~~~iKiKvG~~-------------------------------------------------~~ 179 (389)
T 3ozy_A 149 DLTPDQAADELAGWVEQGFTAAKLKVGRA-------------------------------------------------PR 179 (389)
T ss_dssp SCCHHHHHHHHHHHHHTTCSEEEEECCSC-------------------------------------------------HH
T ss_pred CCCHHHHHHHHHHHHHCCCCEEeeccCCC-------------------------------------------------HH
Confidence 46788888888888889999987765431 11
Q ss_pred CCHHHHHHHHHhc--CCCEEEEec--cCHHH--------HHcCCcEEEEcCCCccCCCCCcchHHHHHHHH-HHcCCCce
Q 017781 212 LSWKDVKWLQTIT--KLPILVKGV--LTAED--------VQAGAAGIIVSNHGARQLDYVPATIMALEEVV-KATQGRIP 278 (366)
Q Consensus 212 ~~~~~i~~lr~~~--~~pv~vK~v--~~~~d--------~~aGad~I~vs~~gg~~~~~~~~~~~~l~~i~-~~~~~~i~ 278 (366)
.+.+.++.+|+.+ +.+|.+..- .+.++ .+.|+++|- +. ..+..++.+.+++ +.+ .+|
T Consensus 180 ~d~~~v~avR~a~g~d~~l~vDan~~~~~~~A~~~~~~l~~~~i~~iE-------qP-~~~~d~~~~~~l~~~~~--~iP 249 (389)
T 3ozy_A 180 KDAANLRAMRQRVGADVEILVDANQSLGRHDALAMLRILDEAGCYWFE-------EP-LSIDDIEGHRILRAQGT--PVR 249 (389)
T ss_dssp HHHHHHHHHHHHHCTTSEEEEECTTCCCHHHHHHHHHHHHHTTCSEEE-------SC-SCTTCHHHHHHHHTTCC--SSE
T ss_pred HHHHHHHHHHHHcCCCceEEEECCCCcCHHHHHHHHHHHHhcCCCEEE-------CC-CCcccHHHHHHHHhcCC--CCC
Confidence 2345677788776 567777743 34444 667888884 11 1223577788887 666 799
Q ss_pred EEEecCCCCHHHHHHHHHhC-cCEEEecH
Q 017781 279 VFLDGGVRRGTDVFKALALG-ASGIFIGR 306 (366)
Q Consensus 279 vi~~GGI~~~~dv~kalalG-Ad~V~igr 306 (366)
|++++.+.+..|+.+++..| +|.|++--
T Consensus 250 Ia~dE~i~~~~~~~~~i~~~~~d~v~ik~ 278 (389)
T 3ozy_A 250 IATGENLYTRNAFNDYIRNDAIDVLQADA 278 (389)
T ss_dssp EEECTTCCHHHHHHHHHHTTCCSEECCCT
T ss_pred EEeCCCCCCHHHHHHHHHcCCCCEEEeCc
Confidence 99999999999999999987 89999864
|
| >2pp0_A L-talarate/galactarate dehydratase; enolase superfamily, LYA; 2.20A {Salmonella typhimurium} PDB: 2pp1_A* 2pp3_A* | Back alignment and structure |
|---|
Probab=95.68 E-value=0.076 Score=51.79 Aligned_cols=115 Identities=13% Similarity=0.068 Sum_probs=82.6
Q ss_pred CHHHHHHHHHHHHHcCCCEEEEecCCCCCcchhHHHhhhcCCCCccccccccccccCCCccccchhhHHHhhhccCCCCC
Q 017781 134 DRNVVAQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLTLKNFQGLDLGKMDEANDSGLAAYVAGQIDRSLS 213 (366)
Q Consensus 134 d~~~~~~~l~ra~~~G~~ai~vtvd~p~~g~r~~d~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~ 213 (366)
+.+.+.+.++++.+.|++++-+.+..+ +....
T Consensus 175 ~~e~~~~~a~~~~~~Gf~~vKik~g~~------------------------------------------------~~~~d 206 (398)
T 2pp0_A 175 PLDQVLKNVVISRENGIGGIKLKVGQP------------------------------------------------NCAED 206 (398)
T ss_dssp CHHHHHHHHHHHHHTTCSCEEEECCCS------------------------------------------------CHHHH
T ss_pred CHHHHHHHHHHHHHhCCCeEEEecCCC------------------------------------------------CHHHH
Confidence 677777778888889999987765321 01124
Q ss_pred HHHHHHHHHhc--CCCEEEEec--cCHHH--------HHcCCcEEEEcCCCccCCCCCcchHHHHHHHHHHcCCCceEEE
Q 017781 214 WKDVKWLQTIT--KLPILVKGV--LTAED--------VQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFL 281 (366)
Q Consensus 214 ~~~i~~lr~~~--~~pv~vK~v--~~~~d--------~~aGad~I~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~i~vi~ 281 (366)
.+.++.+|+.+ +++|.+..- .+.++ .+.|+++|-- ...+..++.+.++++.+ ++||++
T Consensus 207 ~e~v~avR~avG~d~~l~vDan~~~~~~~ai~~~~~l~~~~i~~iEq--------P~~~~d~~~~~~l~~~~--~iPIa~ 276 (398)
T 2pp0_A 207 IRRLTAVREALGDEFPLMVDANQQWDRETAIRMGRKMEQFNLIWIEE--------PLDAYDIEGHAQLAAAL--DTPIAT 276 (398)
T ss_dssp HHHHHHHHHHHCSSSCEEEECTTCSCHHHHHHHHHHHGGGTCSCEEC--------CSCTTCHHHHHHHHHHC--SSCEEE
T ss_pred HHHHHHHHHHcCCCCeEEEECCCCCCHHHHHHHHHHHHHcCCceeeC--------CCChhhHHHHHHHHhhC--CCCEEe
Confidence 55677788776 577777733 35544 5567776641 11234678888888887 799999
Q ss_pred ecCCCCHHHHHHHHHhC-cCEEEecH
Q 017781 282 DGGVRRGTDVFKALALG-ASGIFIGR 306 (366)
Q Consensus 282 ~GGI~~~~dv~kalalG-Ad~V~igr 306 (366)
++.+.+..++.+++..| +|.|++--
T Consensus 277 dE~~~~~~~~~~~i~~~~~d~v~ik~ 302 (398)
T 2pp0_A 277 GEMLTSFREHEQLILGNASDFVQPDA 302 (398)
T ss_dssp CTTCCSHHHHHHHHHTTCCSEECCCH
T ss_pred cCCcCCHHHHHHHHHcCCCCEEEeCc
Confidence 99999999999999988 89999864
|
| >1l6w_A Fructose-6-phosphate aldolase 1; alpha-beta barrel, domain swapping, lyase; 1.93A {Escherichia coli} SCOP: c.1.10.1 | Back alignment and structure |
|---|
Probab=95.62 E-value=0.42 Score=42.82 Aligned_cols=112 Identities=13% Similarity=0.120 Sum_probs=74.1
Q ss_pred CHHHHHHHHHhc--CCCEEEEeccCHHH----HHcCCcEEEEcCCCccCCCCCcchHHHHHHHHHHc---CCCceEEEec
Q 017781 213 SWKDVKWLQTIT--KLPILVKGVLTAED----VQAGAAGIIVSNHGARQLDYVPATIMALEEVVKAT---QGRIPVFLDG 283 (366)
Q Consensus 213 ~~~~i~~lr~~~--~~pv~vK~v~~~~d----~~aGad~I~vs~~gg~~~~~~~~~~~~l~~i~~~~---~~~i~vi~~G 283 (366)
+|+-++.++... ++++-+=.+.+.+. .++|++.|.. .-||-.+++.+....+.++++.. +.+..|++.
T Consensus 89 T~eGl~A~~~L~~~GI~vn~TliFS~~QA~~aa~AGa~~iSp--fvgRidd~g~~G~~~i~~~~~~y~~~~~~t~il~A- 165 (220)
T 1l6w_A 89 TAEGLAAIKMLKAEGIPTLGTAVYGAAQGLLSALAGAEYVAP--YVNRIDAQGGSGIQTVTDLHQLLKMHAPQAKVLAA- 165 (220)
T ss_dssp SHHHHHHHHHHHHHTCCEEEEEECSHHHHHHHHHHTCSEEEE--BHHHHHHTTSCHHHHHHHHHHHHHHHCTTCEEEEB-
T ss_pred CHHHHHHHHHHHHCCCcEEEEEeCCHHHHHHHHHCCCeEEEe--ccchhhcccccHHHHHHHHHHHHHhcCCCeEEeec-
Confidence 555444444332 89999999999887 8899987754 33443344444555555555433 235556665
Q ss_pred CCCCHHHHHHHHHhCcCEEEecHHHHHHhhhcC--HHHHHHHHHHH
Q 017781 284 GVRRGTDVFKALALGASGIFIGRPVVYSLAAEG--EKGVRRVLEML 327 (366)
Q Consensus 284 GI~~~~dv~kalalGAd~V~igr~~l~~l~~~G--~~gv~~~~~~l 327 (366)
++|++.++.++..+|+|.+-+.-.++..+...+ ..+++.+.+.+
T Consensus 166 S~r~~~~v~~~~l~G~d~~Tip~~~l~~l~~h~lt~~~v~~F~~D~ 211 (220)
T 1l6w_A 166 SFKTPRQALDCLLAGCESITLPLDVAQQMISYPAVDAAVAKFEQDW 211 (220)
T ss_dssp CCSSHHHHHHHHHTTCSEEEECHHHHHHTTCCHHHHHHHHHHHHHH
T ss_pred ccCCHHHHHHHHHhCCCeEECCHHHHHHHHcCCChHHHHHHHHHHH
Confidence 599999999999999999999988888765433 23444444333
|
| >1tkk_A Similar to chloromuconate cycloisomerase; epimerase, enolase super family,; 2.10A {Bacillus subtilis} SCOP: c.1.11.2 d.54.1.1 PDB: 1jpm_A | Back alignment and structure |
|---|
Probab=95.51 E-value=0.12 Score=49.51 Aligned_cols=117 Identities=16% Similarity=0.185 Sum_probs=82.3
Q ss_pred CCHHHHHHHHHHHHHcCCCEEEEecCCCCCcchhHHHhhhcCCCCccccccccccccCCCccccchhhHHHhhhccCCCC
Q 017781 133 KDRNVVAQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLTLKNFQGLDLGKMDEANDSGLAAYVAGQIDRSL 212 (366)
Q Consensus 133 ~d~~~~~~~l~ra~~~G~~ai~vtvd~p~~g~r~~d~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~ 212 (366)
.+++.+.+.++++.+.|++++-+.++++ +...
T Consensus 139 ~~~~~~~~~a~~~~~~Gf~~iKik~g~~------------------------------------------------~~~~ 170 (366)
T 1tkk_A 139 NSPEEMAADAENYLKQGFQTLKIKVGKD------------------------------------------------DIAT 170 (366)
T ss_dssp CCHHHHHHHHHHHHHHTCCEEEEECCSS------------------------------------------------CHHH
T ss_pred CCHHHHHHHHHHHHHcCCCeEEEEeCCC------------------------------------------------CHHH
Confidence 4677777777788888999988765431 0112
Q ss_pred CHHHHHHHHHhc--CCCEEEEec--cCHHH--------HH--cCCcEEEEcCCCccCCCCCcchHHHHHHHHHHcCCCce
Q 017781 213 SWKDVKWLQTIT--KLPILVKGV--LTAED--------VQ--AGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIP 278 (366)
Q Consensus 213 ~~~~i~~lr~~~--~~pv~vK~v--~~~~d--------~~--aGad~I~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~i~ 278 (366)
+.+.++.+|+.+ +.++.+..- .+.++ .+ .|+++|- +. ..+..++.+.++++.+ .+|
T Consensus 171 d~~~v~avr~a~g~~~~l~vDan~~~~~~~a~~~~~~l~~~~~~i~~iE-------qP-~~~~d~~~~~~l~~~~--~ip 240 (366)
T 1tkk_A 171 DIARIQEIRKRVGSAVKLRLDANQGWRPKEAVTAIRKMEDAGLGIELVE-------QP-VHKDDLAGLKKVTDAT--DTP 240 (366)
T ss_dssp HHHHHHHHHHHHCSSSEEEEECTTCSCHHHHHHHHHHHHHTTCCEEEEE-------CC-SCTTCHHHHHHHHHHC--SSC
T ss_pred HHHHHHHHHHHhCCCCeEEEECCCCCCHHHHHHHHHHHhhcCCCceEEE-------CC-CCcccHHHHHHHHhhC--CCC
Confidence 345677777766 466777633 34444 45 6766663 11 1234678888888877 799
Q ss_pred EEEecCCCCHHHHHHHHHhC-cCEEEecHH
Q 017781 279 VFLDGGVRRGTDVFKALALG-ASGIFIGRP 307 (366)
Q Consensus 279 vi~~GGI~~~~dv~kalalG-Ad~V~igr~ 307 (366)
|++++-+.+..|+.+++..| +|.|++--.
T Consensus 241 Ia~dE~~~~~~~~~~~i~~~~~d~v~ik~~ 270 (366)
T 1tkk_A 241 IMADESVFTPRQAFEVLQTRSADLINIKLM 270 (366)
T ss_dssp EEECTTCCSHHHHHHHHHHTCCSEEEECHH
T ss_pred EEEcCCCCCHHHHHHHHHhCCCCEEEeehh
Confidence 99999999999999999987 899999643
|
| >3daq_A DHDPS, dihydrodipicolinate synthase; lysine biosynthesis, amino-ACI biosynthesis, diaminopimelate biosynthesis, lyase, schiff B; 1.45A {Staphylococcus aureus} SCOP: c.1.10.0 PDB: 3di1_A 3di0_A | Back alignment and structure |
|---|
Probab=95.48 E-value=0.037 Score=51.83 Aligned_cols=88 Identities=23% Similarity=0.373 Sum_probs=58.7
Q ss_pred HHcCCcEEEEcCCCccCCCCCcc-hHHHHHHHHHHcCCCceEEEecCCCCHHHHHH----HHHhCcCEEEecHHHHHHhh
Q 017781 239 VQAGAAGIIVSNHGARQLDYVPA-TIMALEEVVKATQGRIPVFLDGGVRRGTDVFK----ALALGASGIFIGRPVVYSLA 313 (366)
Q Consensus 239 ~~aGad~I~vs~~gg~~~~~~~~-~~~~l~~i~~~~~~~i~vi~~GGI~~~~dv~k----alalGAd~V~igr~~l~~l~ 313 (366)
.+.|+|+|++.++.|-...-... ..+++..+++.+.+++|||+--|-.+-.++++ |-.+|||++++-.|+++..
T Consensus 33 i~~Gv~gl~v~GttGE~~~Lt~~Er~~v~~~~~~~~~grvpviaGvg~~~t~~ai~la~~a~~~Gadavlv~~P~y~~~- 111 (292)
T 3daq_A 33 LENNAQAIIVNGTTAESPTLTTDEKELILKTVIDLVDKRVPVIAGTGTNDTEKSIQASIQAKALGADAIMLITPYYNKT- 111 (292)
T ss_dssp HHTTCCEEEESSGGGTGGGSCHHHHHHHHHHHHHHHTTSSCEEEECCCSCHHHHHHHHHHHHHHTCSEEEEECCCSSCC-
T ss_pred HHcCCCEEEECccccccccCCHHHHHHHHHHHHHHhCCCCcEEEeCCcccHHHHHHHHHHHHHcCCCEEEECCCCCCCC-
Confidence 56899999998876632211111 23455666666777899998666666666664 4448999999999987642
Q ss_pred hcCHHHHHHHHHHHHH
Q 017781 314 AEGEKGVRRVLEMLRE 329 (366)
Q Consensus 314 ~~G~~gv~~~~~~l~~ 329 (366)
.++++.++++.+.+
T Consensus 112 --~~~~l~~~f~~ia~ 125 (292)
T 3daq_A 112 --NQRGLVKHFEAIAD 125 (292)
T ss_dssp --CHHHHHHHHHHHHH
T ss_pred --CHHHHHHHHHHHHH
Confidence 45666655555543
|
| >4adt_A Pyridoxine biosynthetic enzyme PDX1 homologue, PU; transferase, pyridoxal 5-phosphate biosynthesis; 2.42A {Plasmodium berghei} PDB: 4adu_A* 4ads_A | Back alignment and structure |
|---|
Probab=95.44 E-value=0.029 Score=52.79 Aligned_cols=83 Identities=12% Similarity=0.040 Sum_probs=57.3
Q ss_pred CCHHHHHHHHHhcCCCEEEEec-cCHHH----HHcCCcEEEEcCCCccCCCCCcchHHHHHHHHHHcCCCceEEEecCCC
Q 017781 212 LSWKDVKWLQTITKLPILVKGV-LTAED----VQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVR 286 (366)
Q Consensus 212 ~~~~~i~~lr~~~~~pv~vK~v-~~~~d----~~aGad~I~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~i~vi~~GGI~ 286 (366)
.+.+.|+++++.+++||+.|.. ...++ .++|||.|..+. + . ...+.+..+.+. ...+++++ +++
T Consensus 65 ~~~~~i~~i~~~v~iPvl~k~~i~~ide~qil~aaGAD~Id~s~-~-~------~~~~li~~i~~~-~~g~~vvv--~v~ 133 (297)
T 4adt_A 65 VDPLKIEEIRKCISINVLAKVRIGHFVEAQILEELKVDMLDESE-V-L------TMADEYNHINKH-KFKTPFVC--GCT 133 (297)
T ss_dssp CCHHHHHHHHTTCCSEEEEEEETTCHHHHHHHHHTTCSEEEEET-T-S------CCSCSSCCCCGG-GCSSCEEE--EES
T ss_pred CCHHHHHHHHHhcCCCEEEeccCCcHHHHHHHHHcCCCEEEcCC-C-C------CHHHHHHHHHhc-CCCCeEEE--EeC
Confidence 3678999999999999999953 34544 889999992211 1 0 011122222221 12577777 599
Q ss_pred CHHHHHHHHHhCcCEEEec
Q 017781 287 RGTDVFKALALGASGIFIG 305 (366)
Q Consensus 287 ~~~dv~kalalGAd~V~ig 305 (366)
+.+++.+++.+|||.|.+.
T Consensus 134 ~~~Ea~~a~~~Gad~I~v~ 152 (297)
T 4adt_A 134 NLGEALRRISEGASMIRTK 152 (297)
T ss_dssp SHHHHHHHHHHTCSEEEEC
T ss_pred CHHHHHHHHhCCCCEEEEC
Confidence 9999999999999999886
|
| >4fo4_A Inosine 5'-monophosphate dehydrogenase; structural genomics, IMPDH, IMP, mycophenolic acid, MOA; HET: IMP MOA; 2.03A {Vibrio cholerae o1 biovar el tor} PDB: 4ff0_A* 4hlv_A* 4fez_A | Back alignment and structure |
|---|
Probab=95.41 E-value=0.046 Score=52.95 Aligned_cols=85 Identities=15% Similarity=0.205 Sum_probs=57.5
Q ss_pred HHHHHHHHhcCCCEEEEeccC---HHH----HHcCCcEEEEcCCCccCCCCCcchHHHHHHHHHHcCCCceEEEecCCCC
Q 017781 215 KDVKWLQTITKLPILVKGVLT---AED----VQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRR 287 (366)
Q Consensus 215 ~~i~~lr~~~~~pv~vK~v~~---~~d----~~aGad~I~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~i~vi~~GGI~~ 287 (366)
+.++++|+.-.+++.+-...+ .+. .++|+|.|++....|. ....++.+.++++..+ +++|++ |.+.+
T Consensus 86 ~~i~~vk~~~~l~vga~vg~~~~~~~~~~~lieaGvd~I~idta~G~----~~~~~~~I~~ik~~~p-~v~Vi~-G~v~t 159 (366)
T 4fo4_A 86 AQVHQVKISGGLRVGAAVGAAPGNEERVKALVEAGVDVLLIDSSHGH----SEGVLQRIRETRAAYP-HLEIIG-GNVAT 159 (366)
T ss_dssp HHHHHHHTTTSCCCEEECCSCTTCHHHHHHHHHTTCSEEEEECSCTT----SHHHHHHHHHHHHHCT-TCEEEE-EEECS
T ss_pred HHHHHHHhcCceeEEEEeccChhHHHHHHHHHhCCCCEEEEeCCCCC----CHHHHHHHHHHHHhcC-CCceEe-eeeCC
Confidence 346666664334444433222 222 8999999998543331 1234566777877663 578777 67899
Q ss_pred HHHHHHHHHhCcCEEEec
Q 017781 288 GTDVFKALALGASGIFIG 305 (366)
Q Consensus 288 ~~dv~kalalGAd~V~ig 305 (366)
.+++.++..+|||+|.+|
T Consensus 160 ~e~A~~a~~aGAD~I~vG 177 (366)
T 4fo4_A 160 AEGARALIEAGVSAVKVG 177 (366)
T ss_dssp HHHHHHHHHHTCSEEEEC
T ss_pred HHHHHHHHHcCCCEEEEe
Confidence 999999999999999995
|
| >3cpr_A Dihydrodipicolinate synthetase; (beta/alpha)8-barrel fold with A C-terminal alpha-helical segment, amino-acid biosynthesis, cytoplasm; HET: MCL; 2.20A {Corynebacterium glutamicum} | Back alignment and structure |
|---|
Probab=95.41 E-value=0.058 Score=50.80 Aligned_cols=103 Identities=13% Similarity=0.194 Sum_probs=65.2
Q ss_pred CCCCHHHHHHHHHhcCCCEEEEeccCHHHHHcCCcEEEEcCCCccCCCCCcc-hHHHHHHHHHHcCCCceEEEecCCCCH
Q 017781 210 RSLSWKDVKWLQTITKLPILVKGVLTAEDVQAGAAGIIVSNHGARQLDYVPA-TIMALEEVVKATQGRIPVFLDGGVRRG 288 (366)
Q Consensus 210 ~~~~~~~i~~lr~~~~~pv~vK~v~~~~d~~aGad~I~vs~~gg~~~~~~~~-~~~~l~~i~~~~~~~i~vi~~GGI~~~ 288 (366)
...+++.++++.+.. .+.|+|+|++.++.|-...-... ..+++..+++.+.+++|||+--|=.+-
T Consensus 32 g~iD~~~l~~lv~~l--------------i~~Gv~gl~v~GttGE~~~Ls~~Er~~v~~~~~~~~~grvpviaGvg~~st 97 (304)
T 3cpr_A 32 GDIDIAAGREVAAYL--------------VDKGLDSLVLAGTTGESPTTTAAEKLELLKAVREEVGDRAKLIAGVGTNNT 97 (304)
T ss_dssp SCBCHHHHHHHHHHH--------------HHTTCCEEEESSTTTTTTTSCHHHHHHHHHHHHHHHTTTSEEEEECCCSCH
T ss_pred CCcCHHHHHHHHHHH--------------HHcCCCEEEECccccChhhCCHHHHHHHHHHHHHHhCCCCcEEecCCCCCH
Confidence 345666665554432 56799999998876643222222 234566666677778999876565555
Q ss_pred HHHHH----HHHhCcCEEEecHHHHHHhhhcCHHHHHHHHHHHHH
Q 017781 289 TDVFK----ALALGASGIFIGRPVVYSLAAEGEKGVRRVLEMLRE 329 (366)
Q Consensus 289 ~dv~k----alalGAd~V~igr~~l~~l~~~G~~gv~~~~~~l~~ 329 (366)
.++++ |-.+|||++++-.|+++.. .++++.++++.+.+
T Consensus 98 ~~ai~la~~A~~~Gadavlv~~P~y~~~---~~~~l~~~f~~ia~ 139 (304)
T 3cpr_A 98 RTSVELAEAAASAGADGLLVVTPYYSKP---SQEGLLAHFGAIAA 139 (304)
T ss_dssp HHHHHHHHHHHHTTCSEEEEECCCSSCC---CHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCCCEEEECCCCCCCC---CHHHHHHHHHHHHH
Confidence 55553 3347999999999987542 45666555554443
|
| >3g8r_A Probable spore coat polysaccharide biosynthesis P; structural genomics, protein structure initiative; 2.49A {Chromobacterium violaceum atcc 12472} | Back alignment and structure |
|---|
Probab=95.40 E-value=0.27 Score=47.13 Aligned_cols=230 Identities=14% Similarity=0.168 Sum_probs=115.7
Q ss_pred cCCceEecccccccccCChhhHHHHHHHHHcCCce----ecCCCCCCCHHHHhcc-C---CCceEEEeee--cCCHHHHH
Q 017781 70 ISMPIMIAPTAMQKMAHPEGEYATARAASAAGTIM----TLSSWSTSSVEEVAST-G---PGIRFFQLYV--YKDRNVVA 139 (366)
Q Consensus 70 l~~Pi~iApm~~~~l~~~~~e~~la~aa~~~G~~~----~vs~~~~~~~e~i~~~-~---~~~~~~Qly~--~~d~~~~~ 139 (366)
+..|++||=+|..--..-+.-..+.++|+++|.-. ++=-+ ....+++... . ....+++.|. .-..+...
T Consensus 3 ~~~~~IIAEig~NHnGdle~Ak~lI~~A~~aGad~~~d~avKfQ-t~~~d~l~~~~~~~~~~~~~~~~~~~~el~~e~~~ 81 (350)
T 3g8r_A 3 LSKPLFIFEMANNHMGNVEHGVALIRAIRESCQGFDFDFGFKLQ-YRNLDTFIHSSFKGRDDVKYVKRFEETRLQPEQMQ 81 (350)
T ss_dssp --CCEEEEECTTTTTTCSHHHHHHHHHHHHHTTTCCSEEEEEEE-ECCHHHHBCGGGTTCCSSSSHHHHHHTCCCHHHHH
T ss_pred CCCCEEEEEECCCccCcHHHHHHHHHHHHHhCCcccCCeeEEcc-ccchhhhcChhccCccHHHHHHHHHHhcCCHHHHH
Confidence 34799999997643222222357778999998741 21101 1223333211 0 1112233331 13567778
Q ss_pred HHHHHHHHcCCCEEEEecCCCCCcchhHHHhhhcCCCCccccccccccccCCCccccchhhHHHhhhccCCCC-CHHHHH
Q 017781 140 QLVRRAERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLTLKNFQGLDLGKMDEANDSGLAAYVAGQIDRSL-SWKDVK 218 (366)
Q Consensus 140 ~~l~ra~~~G~~ai~vtvd~p~~g~r~~d~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~-~~~~i~ 218 (366)
.+.+.+++.|...+.--.| .+.-|....+.+|. +. + ...+. .+..++
T Consensus 82 ~L~~~~~~~Gi~~~st~fD-----~~svd~l~~~~v~~-~K-----------I---------------~S~~~~N~pLL~ 129 (350)
T 3g8r_A 82 KLVAEMKANGFKAICTPFD-----EESVDLIEAHGIEI-IK-----------I---------------ASCSFTDWPLLE 129 (350)
T ss_dssp HHHHHHHHTTCEEEEEECS-----HHHHHHHHHTTCCE-EE-----------E---------------CSSSTTCHHHHH
T ss_pred HHHHHHHHcCCcEEeccCC-----HHHHHHHHHcCCCE-EE-----------E---------------CcccccCHHHHH
Confidence 8888899999877643222 22223333332221 00 0 11222 456677
Q ss_pred HHHHhcCCCEEEEec-cCHHH--------HHcCCcEEEEcCCCccCCCCCcchHHHHHHHHHHcCCCceEEEec---CCC
Q 017781 219 WLQTITKLPILVKGV-LTAED--------VQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDG---GVR 286 (366)
Q Consensus 219 ~lr~~~~~pv~vK~v-~~~~d--------~~aGad~I~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~i~vi~~G---GI~ 286 (366)
.+-+ +++||++|.. .+.++ .+.|.+.+.+....++.-...-..+.+++.+++..+ .+||-.++ |-.
T Consensus 130 ~va~-~gKPviLstGmstl~Ei~~Ave~i~~~g~~viLlhC~s~YPt~~~~~nL~aI~~Lk~~fp-~lpVG~SdHt~g~~ 207 (350)
T 3g8r_A 130 RIAR-SDKPVVASTAGARREDIDKVVSFMLHRGKDLTIMHCVAEYPTPDDHLHLARIKTLRQQYA-GVRIGYSTHEDPDL 207 (350)
T ss_dssp HHHT-SCSCEEEECTTCCHHHHHHHHHHHHTTTCCEEEEECCCCSSCCGGGCCTTHHHHHHHHCT-TSEEEEEECCCSSC
T ss_pred HHHh-hCCcEEEECCCCCHHHHHHHHHHHHHcCCCEEEEecCCCCCCCcccCCHHHHHHHHHHCC-CCCEEcCCCCCCCc
Confidence 7765 6899999955 56666 456777555533222111011123456777766552 48887662 111
Q ss_pred CHHHHHHHHHhCcCEEEecHHHHHHh--hhc-----CHHHHHHHHHHHHHHHHHHHHHcCCC
Q 017781 287 RGTDVFKALALGASGIFIGRPVVYSL--AAE-----GEKGVRRVLEMLREEFELAMALSGCR 341 (366)
Q Consensus 287 ~~~dv~kalalGAd~V~igr~~l~~l--~~~-----G~~gv~~~~~~l~~el~~~m~~~G~~ 341 (366)
. .-+..|+++||+ +|=+-|--.- ... -++. +..|.++++..-..+|..
T Consensus 208 ~-~~~~AAvAlGA~--vIEkH~tldr~~g~D~~~Sl~P~e----f~~lv~~ir~i~~alG~~ 262 (350)
T 3g8r_A 208 M-EPIMLAVAQGAT--VFEKHVGLPTDQYGINNYSANPEQ----VRRWLAAAARALAMLGDG 262 (350)
T ss_dssp C-HHHHHHHHTTCC--EEEEEBCCCBTTBCCCTTCBCHHH----HHHHHHHHHHHHHHHCCT
T ss_pred c-HHHHHHHHcCCC--EEEEecCcccCCCCcccccCCHHH----HHHHHHHHHHHHHHcCCC
Confidence 2 234578999997 4444332111 011 2333 445556666666677753
|
| >3r2g_A Inosine 5'-monophosphate dehydrogenase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 1.94A {Legionella pneumophila subsp} | Back alignment and structure |
|---|
Probab=95.38 E-value=0.084 Score=50.95 Aligned_cols=61 Identities=20% Similarity=0.050 Sum_probs=47.5
Q ss_pred HHcCCcEEEEcCCCccCCCCCcchHHHHHHHHHHcCCCceEEEecCCCCHHHHHHHHHhCcCEEEec
Q 017781 239 VQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFIG 305 (366)
Q Consensus 239 ~~aGad~I~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~i~vi~~GGI~~~~dv~kalalGAd~V~ig 305 (366)
.++|+|.|+++...|. ....++.+..+++..+ ++||++ |+|.+.+++.++..+|||+|.+|
T Consensus 109 ~~aGvdvI~id~a~G~----~~~~~e~I~~ir~~~~-~~~Vi~-G~V~T~e~A~~a~~aGaD~I~Vg 169 (361)
T 3r2g_A 109 RDAGADFFCVDVAHAH----AKYVGKTLKSLRQLLG-SRCIMA-GNVATYAGADYLASCGADIIKAG 169 (361)
T ss_dssp HHTTCCEEEEECSCCS----SHHHHHHHHHHHHHHT-TCEEEE-EEECSHHHHHHHHHTTCSEEEEC
T ss_pred HHcCCCEEEEeCCCCC----cHhHHHHHHHHHHhcC-CCeEEE-cCcCCHHHHHHHHHcCCCEEEEc
Confidence 8999999998643232 2234667888877653 688887 67999999999999999999985
|
| >1yxy_A Putative N-acetylmannosamine-6-phosphate 2-epimer; structural genomics, epimerase, PSI, structure initiative; 1.60A {Streptococcus pyogenes} SCOP: c.1.2.5 | Back alignment and structure |
|---|
Probab=95.36 E-value=0.23 Score=44.36 Aligned_cols=84 Identities=19% Similarity=0.174 Sum_probs=54.6
Q ss_pred HHHHHHHHhcCCCEEE--E-e-------c-cCHHH----HHcCCcEEEEcCCCccCCCCCcchHHHHHHHHHHcCCCceE
Q 017781 215 KDVKWLQTITKLPILV--K-G-------V-LTAED----VQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPV 279 (366)
Q Consensus 215 ~~i~~lr~~~~~pv~v--K-~-------v-~~~~d----~~aGad~I~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~i~v 279 (366)
+.++.+|+.+++|++- | . + ...+. .++|+|.|.++..-....+ +....+.+..+++..+ .+++
T Consensus 59 ~~i~~i~~~~~~p~i~~~~~~~~~~~~~i~~~~~~i~~~~~~Gad~V~l~~~~~~~~~-~~~~~~~i~~i~~~~~-~~~v 136 (234)
T 1yxy_A 59 RDIKEIQAITDLPIIGIIKKDYPPQEPFITATMTEVDQLAALNIAVIAMDCTKRDRHD-GLDIASFIRQVKEKYP-NQLL 136 (234)
T ss_dssp HHHHHHHTTCCSCEEEECBCCCTTSCCCBSCSHHHHHHHHTTTCSEEEEECCSSCCTT-CCCHHHHHHHHHHHCT-TCEE
T ss_pred HHHHHHHHhCCCCEEeeEcCCCCccccccCChHHHHHHHHHcCCCEEEEcccccCCCC-CccHHHHHHHHHHhCC-CCeE
Confidence 4567777777888741 1 1 1 12222 7899999988664211111 1134567777777663 4565
Q ss_pred EEecCCCCHHHHHHHHHhCcCEE
Q 017781 280 FLDGGVRRGTDVFKALALGASGI 302 (366)
Q Consensus 280 i~~GGI~~~~dv~kalalGAd~V 302 (366)
++ ++++.+++.++..+|||.|
T Consensus 137 ~~--~~~t~~ea~~a~~~Gad~i 157 (234)
T 1yxy_A 137 MA--DISTFDEGLVAHQAGIDFV 157 (234)
T ss_dssp EE--ECSSHHHHHHHHHTTCSEE
T ss_pred EE--eCCCHHHHHHHHHcCCCEE
Confidence 54 6899999999999999999
|
| >2oz8_A MLL7089 protein; structural genomics, unknown function, PSI-2, protein struct initiative; 2.48A {Mesorhizobium loti} | Back alignment and structure |
|---|
Probab=95.31 E-value=0.48 Score=45.89 Aligned_cols=114 Identities=12% Similarity=0.082 Sum_probs=78.4
Q ss_pred CHHHHHHHHHHHHHcCCCEEEEecCCCCCcchhHHHhhhcCCCCccccccccccccCCCccccchhhHHHhhhccCCCCC
Q 017781 134 DRNVVAQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLTLKNFQGLDLGKMDEANDSGLAAYVAGQIDRSLS 213 (366)
Q Consensus 134 d~~~~~~~l~ra~~~G~~ai~vtvd~p~~g~r~~d~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~ 213 (366)
+.+.+.+.++++.+.|++++-+.++.+ +....
T Consensus 145 ~~~~~~~~a~~~~~~Gf~~vKik~g~~------------------------------------------------~~~~~ 176 (389)
T 2oz8_A 145 DDDAFVSLFSHAASIGYSAFKIKVGHR------------------------------------------------DFDRD 176 (389)
T ss_dssp CHHHHHHHHHHHHHTTCCEEEEECCCS------------------------------------------------SHHHH
T ss_pred CHHHHHHHHHHHHHhCCCEEEEccCCC------------------------------------------------CHHHH
Confidence 677777788888889999998765431 01123
Q ss_pred HHHHHHHHHhc--CCCEEEEec--cCHHH--------HH--cCCcEEEEcCCCccCCCCCcchHHHHHHHHHHcCCCceE
Q 017781 214 WKDVKWLQTIT--KLPILVKGV--LTAED--------VQ--AGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPV 279 (366)
Q Consensus 214 ~~~i~~lr~~~--~~pv~vK~v--~~~~d--------~~--aGad~I~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~i~v 279 (366)
.+.++.+|+.+ +.+|.+..- .+.++ .+ .++++|- +. ..+..++.+.++++.++ ++||
T Consensus 177 ~e~v~avR~a~G~~~~l~vDan~~~~~~~a~~~~~~l~~~g~~i~~iE-------qP-~~~~~~~~~~~l~~~~~-~iPI 247 (389)
T 2oz8_A 177 LRRLELLKTCVPAGSKVMIDPNEAWTSKEALTKLVAIREAGHDLLWVE-------DP-ILRHDHDGLRTLRHAVT-WTQI 247 (389)
T ss_dssp HHHHHHHHTTSCTTCEEEEECTTCBCHHHHHHHHHHHHHTTCCCSEEE-------SC-BCTTCHHHHHHHHHHCC-SSEE
T ss_pred HHHHHHHHHhhCCCCeEEEECCCCCCHHHHHHHHHHHHhcCCCceEEe-------CC-CCCcCHHHHHHHHhhCC-CCCE
Confidence 45567777766 466666632 34443 45 4555552 11 12236778888887763 5999
Q ss_pred EEecCCCCHHHHHHHHHhC-cCEEEec
Q 017781 280 FLDGGVRRGTDVFKALALG-ASGIFIG 305 (366)
Q Consensus 280 i~~GGI~~~~dv~kalalG-Ad~V~ig 305 (366)
++++.+ +..|+.+++..| +|.|++.
T Consensus 248 a~dE~~-~~~~~~~~i~~~~~d~v~ik 273 (389)
T 2oz8_A 248 NSGEYL-DLQGKRLLLEAHAADILNVH 273 (389)
T ss_dssp EECTTC-CHHHHHHHHHTTCCSEEEEC
T ss_pred EeCCCC-CHHHHHHHHHcCCCCEEEEC
Confidence 999999 999999999988 8999996
|
| >1twd_A Copper homeostasis protein CUTC; TIM-like protein, structural genomics, PSI, protein structure initiative; 1.70A {Shigella flexneri} SCOP: c.1.30.1 PDB: 1x7i_A 1x8c_A | Back alignment and structure |
|---|
Probab=95.30 E-value=0.18 Score=46.14 Aligned_cols=122 Identities=14% Similarity=0.194 Sum_probs=76.8
Q ss_pred eecCCHHHHHHHHHHHHHcCCCEEEEecCCCCCcchhHHHhhhcCCCCccccccccccccCCCccccchhhHHHhhhccC
Q 017781 130 YVYKDRNVVAQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLTLKNFQGLDLGKMDEANDSGLAAYVAGQID 209 (366)
Q Consensus 130 y~~~d~~~~~~~l~ra~~~G~~ai~vtvd~p~~g~r~~d~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d 209 (366)
|...+.+.+.+-++.++++|++++++.+-.+ |
T Consensus 67 Ys~~E~~~M~~Di~~~~~~GadGvV~G~Lt~------------------------------------------------d 98 (256)
T 1twd_A 67 YSDGEFAAILEDVRTVRELGFPGLVTGVLDV------------------------------------------------D 98 (256)
T ss_dssp CCHHHHHHHHHHHHHHHHTTCSEEEECCBCT------------------------------------------------T
T ss_pred CCHHHHHHHHHHHHHHHHcCCCEEEEeeECC------------------------------------------------C
Confidence 5444667788888999999999999854322 2
Q ss_pred CCCCHHHHHHHHHhc-CCCEEEEec----cCHHH-----HHcCCcEEEEcCCCccCCCCCcchHHHHHHHHHHcCCCceE
Q 017781 210 RSLSWKDVKWLQTIT-KLPILVKGV----LTAED-----VQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPV 279 (366)
Q Consensus 210 ~~~~~~~i~~lr~~~-~~pv~vK~v----~~~~d-----~~aGad~I~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~i~v 279 (366)
...+.+.++++.+.. +.|+.+=-. .++.+ .+.|+|.|--|+... .....++.|.++.+... ++.|
T Consensus 99 g~iD~~~~~~Li~~a~~~~vTFHRAfD~~~d~~~ale~L~~lG~~rILTSG~~~----~a~~g~~~L~~Lv~~a~-~i~I 173 (256)
T 1twd_A 99 GNVDMPRMEKIMAAAGPLAVTFHRAFDMCANPLYTLNNLAELGIARVLTSGQKS----DALQGLSKIMELIAHRD-APII 173 (256)
T ss_dssp SSBCHHHHHHHHHHHTTSEEEECGGGGGCSCHHHHHHHHHHHTCCEEEECTTSS----STTTTHHHHHHHHTSSS-CCEE
T ss_pred CCcCHHHHHHHHHHhCCCcEEEECchhccCCHHHHHHHHHHcCCCEEECCCCCC----CHHHHHHHHHHHHHhhC-CcEE
Confidence 234555555555544 345444321 12222 778999997655321 22334556666665444 7889
Q ss_pred EEecCCCCHHHHHHHHHhCcCEEEec
Q 017781 280 FLDGGVRRGTDVFKALALGASGIFIG 305 (366)
Q Consensus 280 i~~GGI~~~~dv~kalalGAd~V~ig 305 (366)
++-|||+. +.+.+-+..|++.+-.+
T Consensus 174 m~GgGv~~-~Ni~~l~~tGv~e~H~S 198 (256)
T 1twd_A 174 MAGAGVRA-ENLHHFLDAGVLEVHSS 198 (256)
T ss_dssp EEESSCCT-TTHHHHHHHTCSEEEEC
T ss_pred EecCCcCH-HHHHHHHHcCCCeEeEC
Confidence 99999963 45555557899988865
|
| >3tak_A DHDPS, dihydrodipicolinate synthase; TIM barrel, lysine biosynthesis, pyruvate, lyase; 1.42A {Acinetobacter baumannii} PDB: 3pud_A* 3pue_A* 3pul_A 3rk8_A 3tce_A* 3tdf_A 3u8g_A 3uqn_A 4dxv_A | Back alignment and structure |
|---|
Probab=95.29 E-value=0.045 Score=51.16 Aligned_cols=103 Identities=17% Similarity=0.344 Sum_probs=66.1
Q ss_pred CCCCHHHHHHHHHhcCCCEEEEeccCHHHHHcCCcEEEEcCCCccCCCCCcc-hHHHHHHHHHHcCCCceEEEecCCCCH
Q 017781 210 RSLSWKDVKWLQTITKLPILVKGVLTAEDVQAGAAGIIVSNHGARQLDYVPA-TIMALEEVVKATQGRIPVFLDGGVRRG 288 (366)
Q Consensus 210 ~~~~~~~i~~lr~~~~~pv~vK~v~~~~d~~aGad~I~vs~~gg~~~~~~~~-~~~~l~~i~~~~~~~i~vi~~GGI~~~ 288 (366)
...+++.++++.+.. .+.|+|+|++.++.|....-... ..+++..+++.+.+++|||+--|=.+-
T Consensus 17 g~iD~~~l~~lv~~l--------------i~~Gv~gl~~~GttGE~~~Ls~~Er~~v~~~~~~~~~gr~pviaGvg~~~t 82 (291)
T 3tak_A 17 GGVDWKSLEKLVEWH--------------IEQGTNSIVAVGTTGEASTLSMEEHTQVIKEIIRVANKRIPIIAGTGANST 82 (291)
T ss_dssp SCBCHHHHHHHHHHH--------------HHHTCCEEEESSTTTTGGGSCHHHHHHHHHHHHHHHTTSSCEEEECCCSSH
T ss_pred CCcCHHHHHHHHHHH--------------HHCCCCEEEECccccccccCCHHHHHHHHHHHHHHhCCCCeEEEeCCCCCH
Confidence 456676666555432 56899999998876642211111 234556666667778999986665566
Q ss_pred HHHHH----HHHhCcCEEEecHHHHHHhhhcCHHHHHHHHHHHHH
Q 017781 289 TDVFK----ALALGASGIFIGRPVVYSLAAEGEKGVRRVLEMLRE 329 (366)
Q Consensus 289 ~dv~k----alalGAd~V~igr~~l~~l~~~G~~gv~~~~~~l~~ 329 (366)
.++++ |-.+|||++++-.|+++.. .++++.++++.+.+
T Consensus 83 ~~ai~la~~a~~~Gadavlv~~P~y~~~---~~~~l~~~f~~ia~ 124 (291)
T 3tak_A 83 REAIELTKAAKDLGADAALLVTPYYNKP---TQEGLYQHYKAIAE 124 (291)
T ss_dssp HHHHHHHHHHHHHTCSEEEEECCCSSCC---CHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCCCEEEEcCCCCCCC---CHHHHHHHHHHHHH
Confidence 66654 4458999999999987642 45666555554443
|
| >1vr6_A Phospho-2-dehydro-3-deoxyheptonate aldolase; TM0343, structural genomics, joint center for STRU genomics, JCSG, protein structure initiative; 1.92A {Thermotoga maritima} SCOP: c.1.10.4 PDB: 1rzm_A* 3pg9_A* 3pg8_A* | Back alignment and structure |
|---|
Probab=95.28 E-value=0.25 Score=47.43 Aligned_cols=265 Identities=18% Similarity=0.192 Sum_probs=135.6
Q ss_pred hhcCCccchhhH-HHhHhcccceeeeccccC-------CCCCCccceeEcCccc--CCceEecccccccccCChhhHHHH
Q 017781 25 YYASGAEDQWTL-QENRNAFSRILFRPRILI-------DVSKIDMNTTVLGFKI--SMPIMIAPTAMQKMAHPEGEYATA 94 (366)
Q Consensus 25 y~~~ga~~~~t~-~~N~~~f~~i~l~pr~l~-------~~~~vd~st~l~g~~l--~~Pi~iApm~~~~l~~~~~e~~la 94 (366)
.+-|-.||+..+ ....+++..+.=+-|+.. ....-|+..++.+..+ ..|++||=.+. ....+.-..+|
T Consensus 49 ~~ig~~g~~~~~~~~~~~~~~~v~~~~~i~~~~k~~sr~~~~~~~~i~i~~~~iG~~~~~vIAgpcs--~es~e~a~~~a 126 (350)
T 1vr6_A 49 TVIGIIGDDRYVVADKFESLDCVESVVRVLKPYKLVSREFHPEDTVIDLGDVKIGNGYFTIIAGPCS--VEGREMLMETA 126 (350)
T ss_dssp EEEEEEEEESSCCHHHHHTSTTEEEEEECSCSCCTTBTTTCCSCCCEECSSCEESTTEEEEEEECSB--CCCHHHHHHHH
T ss_pred EEEEEECCcCcCCHHHhhCCccceeeccCCCChhhhhhhcCCcCCEEEECCEEECCCCeEEEEeCCC--cCCHHHHHHHH
Confidence 344555776655 345556655554444432 2234455555554333 13777765432 22233346899
Q ss_pred HHHHHcCCceec-CCCCCCCHHHHhccCCCceEEEeeecCCHHHHHHHHHHHHHcCCCEEEEecCCCCCcchhHHHhhhc
Q 017781 95 RAASAAGTIMTL-SSWSTSSVEEVASTGPGIRFFQLYVYKDRNVVAQLVRRAERAGFKAIALTVDTPRLGRREADIKNRF 173 (366)
Q Consensus 95 ~aa~~~G~~~~v-s~~~~~~~e~i~~~~~~~~~~Qly~~~d~~~~~~~l~ra~~~G~~ai~vtvd~p~~g~r~~d~~~~~ 173 (366)
+.+++.|.-++- ..+.+.+ . ++.||- ...+....+.+.+++.|...+.==.| + ..-++...+
T Consensus 127 ~~~k~aGa~~vr~q~fKprT-------s--~~~f~g---lg~egl~~l~~~~~e~Gl~~~te~~d-~----~~~~~l~~~ 189 (350)
T 1vr6_A 127 HFLSELGVKVLRGGAYKPRT-------S--PYSFQG---LGEKGLEYLREAADKYGMYVVTEALG-E----DDLPKVAEY 189 (350)
T ss_dssp HHHHHTTCCEEECBSCCCCC-------S--TTSCCC---CTHHHHHHHHHHHHHHTCEEEEECSS-G----GGHHHHHHH
T ss_pred HHHHHcCCCeeeeeEEeCCC-------C--hHhhcC---CCHHHHHHHHHHHHHcCCcEEEEeCC-H----HHHHHHHHh
Confidence 999999988763 2333222 1 222331 13455555666667788766531111 1 111111111
Q ss_pred CCCCccccccccccccCCCccccchhhHHHhhhccCCC-CCHHHHHHHHHhcCCCEEEEecc--CHHH--------HHcC
Q 017781 174 TLPPFLTLKNFQGLDLGKMDEANDSGLAAYVAGQIDRS-LSWKDVKWLQTITKLPILVKGVL--TAED--------VQAG 242 (366)
Q Consensus 174 ~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~-~~~~~i~~lr~~~~~pv~vK~v~--~~~d--------~~aG 242 (366)
++- +. .+... .+...++++-+ +++||++|..+ +.++ ...|
T Consensus 190 -vd~--------------------------lk-IgAr~~~n~~LL~~va~-~~kPVilk~G~~~tl~ei~~Ave~i~~~G 240 (350)
T 1vr6_A 190 -ADI--------------------------IQ-IGARNAQNFRLLSKAGS-YNKPVLLKRGFMNTIEEFLLSAEYIANSG 240 (350)
T ss_dssp -CSE--------------------------EE-ECGGGTTCHHHHHHHHT-TCSCEEEECCTTCCHHHHHHHHHHHHHTT
T ss_pred -CCE--------------------------EE-ECcccccCHHHHHHHHc-cCCcEEEcCCCCCCHHHHHHHHHHHHHCC
Confidence 000 00 00111 13445666664 68999999664 6665 6778
Q ss_pred CcEEEEcCCCccCCCC---CcchHHHHHHHHHHcCCCceEEEec----CCCC--HHHHHHHHHhCcCEEEecHHHHHHhh
Q 017781 243 AAGIIVSNHGARQLDY---VPATIMALEEVVKATQGRIPVFLDG----GVRR--GTDVFKALALGASGIFIGRPVVYSLA 313 (366)
Q Consensus 243 ad~I~vs~~gg~~~~~---~~~~~~~l~~i~~~~~~~i~vi~~G----GI~~--~~dv~kalalGAd~V~igr~~l~~l~ 313 (366)
.+-+++.-||.+.... ....+..++.+++.. .+||+++. |-+. ..-...|+++||++++|-+-+--.-+
T Consensus 241 N~~viLceRG~~typ~~~~~~vdl~ai~~lk~~~--~lpVi~dssHs~G~~~~v~~~a~AAvA~GA~Gl~IE~H~~pd~a 318 (350)
T 1vr6_A 241 NTKIILCERGIRTFEKATRNTLDISAVPIIRKES--HLPILVDPSHSGGRRDLVIPLSRAAIAVGAHGIIVEVHPEPEKA 318 (350)
T ss_dssp CCCEEEEECCBCCSCCSSSSBCCTTHHHHHHHHB--SSCEEECHHHHHCSGGGHHHHHHHHHHHTCSEEEEEBCSCGGGC
T ss_pred CCeEEEEeCCCCCCCCcChhhhhHHHHHHHHHhh--CCCEEEeCCCCCcccchHHHHHHHHHHhCCCEEEEEecCCcccC
Confidence 7666665566543311 122455666666655 68998844 4433 34455678899999999986532111
Q ss_pred -hcCHHHH-HHHHHHHHHHHHHHHHHcC
Q 017781 314 -AEGEKGV-RRVLEMLREEFELAMALSG 339 (366)
Q Consensus 314 -~~G~~gv-~~~~~~l~~el~~~m~~~G 339 (366)
+.|+..+ -+-+..|.++++..-..+|
T Consensus 319 l~D~~~sL~p~e~~~lv~~ir~i~~alg 346 (350)
T 1vr6_A 319 LSDGKQSLDFELFKELVQEMKKLADALG 346 (350)
T ss_dssp SSCGGGCBCHHHHHHHHHHHHHHHHHHT
T ss_pred CCchhhcCCHHHHHHHHHHHHHHHHHhC
Confidence 1332110 1123455555565555555
|
| >3i4k_A Muconate lactonizing enzyme; structural genomics, NYSGXRC, target 9450D, isomerase, PSI-2, protein structure initiative; 2.20A {Corynebacterium glutamicum} | Back alignment and structure |
|---|
Probab=95.26 E-value=0.21 Score=48.40 Aligned_cols=84 Identities=15% Similarity=0.153 Sum_probs=62.9
Q ss_pred CHHHHHHHHHhc--CCCEEEEec--cCHHH--------HHcCCcEEEEcCCCccCCCCCcchHHHHHHHHHHcCCCceEE
Q 017781 213 SWKDVKWLQTIT--KLPILVKGV--LTAED--------VQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVF 280 (366)
Q Consensus 213 ~~~~i~~lr~~~--~~pv~vK~v--~~~~d--------~~aGad~I~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~i~vi 280 (366)
+.+.++.+|+.+ +.++.+..- .+.++ .+.|+++|- +. ..+..++.+.++++.+ .+||+
T Consensus 180 d~~~v~avR~a~g~~~~l~vDan~~~~~~~A~~~~~~l~~~~i~~iE-------qP-~~~~d~~~~~~l~~~~--~iPIa 249 (383)
T 3i4k_A 180 DTRRVAELAREVGDRVSLRIDINARWDRRTALHYLPILAEAGVELFE-------QP-TPADDLETLREITRRT--NVSVM 249 (383)
T ss_dssp HHHHHHHHHHTTTTTSEEEEECTTCSCHHHHHHHHHHHHHTTCCEEE-------SC-SCTTCHHHHHHHHHHH--CCEEE
T ss_pred HHHHHHHHHHHcCCCCEEEEECCCCCCHHHHHHHHHHHHhcCCCEEE-------CC-CChhhHHHHHHHHhhC--CCCEE
Confidence 456678888876 467877743 34444 667888885 11 1223577788888877 79999
Q ss_pred EecCCCCHHHHHHHHHhC-cCEEEecH
Q 017781 281 LDGGVRRGTDVFKALALG-ASGIFIGR 306 (366)
Q Consensus 281 ~~GGI~~~~dv~kalalG-Ad~V~igr 306 (366)
+++-+.+..|+.+++..| +|.|++--
T Consensus 250 ~dE~~~~~~~~~~~i~~~~~d~v~~k~ 276 (383)
T 3i4k_A 250 ADESVWTPAEALAVVKAQAADVIALKT 276 (383)
T ss_dssp ESTTCSSHHHHHHHHHHTCCSEEEECT
T ss_pred ecCccCCHHHHHHHHHcCCCCEEEEcc
Confidence 999999999999999988 89999864
|
| >1f6k_A N-acetylneuraminate lyase; beta barrel; 1.60A {Haemophilus influenzae} SCOP: c.1.10.1 PDB: 1f5z_A 1f6p_A 1f73_A* 1f74_A* 1f7b_A* | Back alignment and structure |
|---|
Probab=95.26 E-value=0.051 Score=50.89 Aligned_cols=103 Identities=10% Similarity=0.148 Sum_probs=65.9
Q ss_pred CCCCHHHHHHHHHhcCCCEEEEeccCHHHHH-cCCcEEEEcCCCccCCCCCcc-hHHHHHHHHHHcCCCceEEEecCCCC
Q 017781 210 RSLSWKDVKWLQTITKLPILVKGVLTAEDVQ-AGAAGIIVSNHGARQLDYVPA-TIMALEEVVKATQGRIPVFLDGGVRR 287 (366)
Q Consensus 210 ~~~~~~~i~~lr~~~~~pv~vK~v~~~~d~~-aGad~I~vs~~gg~~~~~~~~-~~~~l~~i~~~~~~~i~vi~~GGI~~ 287 (366)
...+++.++++.+.. .+ .|+|+|++.++.|....-... ..+++..+++.+.+++|||+--|=.+
T Consensus 19 g~iD~~~l~~lv~~l--------------i~~~Gv~gl~~~GttGE~~~Ls~~Er~~v~~~~~~~~~grvpviaGvg~~~ 84 (293)
T 1f6k_A 19 GTINEKGLRQIIRHN--------------IDKMKVDGLYVGGSTGENFMLSTEEKKEIFRIAKDEAKDQIALIAQVGSVN 84 (293)
T ss_dssp SCBCHHHHHHHHHHH--------------HHTSCCSEEEESSGGGTGGGSCHHHHHHHHHHHHHHHTTSSEEEEECCCSC
T ss_pred CCcCHHHHHHHHHHH--------------HhhCCCcEEEeCccccchhhCCHHHHHHHHHHHHHHhCCCCeEEEecCCCC
Confidence 456676666555432 56 799999998876643211221 23456666667777899987666656
Q ss_pred HHHHHH----HHHhCcCEEEecHHHHHHhhhcCHHHHHHHHHHHHH
Q 017781 288 GTDVFK----ALALGASGIFIGRPVVYSLAAEGEKGVRRVLEMLRE 329 (366)
Q Consensus 288 ~~dv~k----alalGAd~V~igr~~l~~l~~~G~~gv~~~~~~l~~ 329 (366)
-.++++ |-.+|||++++-.|+++.. .++++.++++.+.+
T Consensus 85 t~~ai~la~~a~~~Gadavlv~~P~y~~~---~~~~l~~~f~~va~ 127 (293)
T 1f6k_A 85 LKEAVELGKYATELGYDCLSAVTPFYYKF---SFPEIKHYYDTIIA 127 (293)
T ss_dssp HHHHHHHHHHHHHHTCSEEEEECCCSSCC---CHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCCCEEEECCCCCCCC---CHHHHHHHHHHHHH
Confidence 666553 3347999999999987642 35666655555443
|
| >2qde_A Mandelate racemase/muconate lactonizing enzyme FA protein; PSI-II, NYSGXRC, enolase, structural genomics, protei structure initiative, PSI-2; 1.93A {Azoarcus SP} | Back alignment and structure |
|---|
Probab=95.24 E-value=0.11 Score=50.70 Aligned_cols=115 Identities=16% Similarity=0.209 Sum_probs=81.4
Q ss_pred CCHHHHHHHHHHHHHcCCCEEEEecCCCCCcchhHHHhhhcCCCCccccccccccccCCCccccchhhHHHhhhccCCCC
Q 017781 133 KDRNVVAQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLTLKNFQGLDLGKMDEANDSGLAAYVAGQIDRSL 212 (366)
Q Consensus 133 ~d~~~~~~~l~ra~~~G~~ai~vtvd~p~~g~r~~d~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~ 212 (366)
.+.+.+.+.++++.+.|++++-+.+... ...
T Consensus 144 ~~~e~~~~~a~~~~~~Gf~~vKik~g~~-------------------------------------------------~~~ 174 (397)
T 2qde_A 144 GEPEAVAEEALAVLREGFHFVKLKAGGP-------------------------------------------------LKA 174 (397)
T ss_dssp SCHHHHHHHHHHHHHHTCSCEEEECCSC-------------------------------------------------HHH
T ss_pred CCHHHHHHHHHHHHHhhhhheeecccCC-------------------------------------------------HHH
Confidence 4677777778888888999987755310 112
Q ss_pred CHHHHHHHHHhc--CCCEEEEec--cCHHH--------HHcCCcEEEEcCCCccCCCCCcchHHHHHHHHHHcCCCceEE
Q 017781 213 SWKDVKWLQTIT--KLPILVKGV--LTAED--------VQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVF 280 (366)
Q Consensus 213 ~~~~i~~lr~~~--~~pv~vK~v--~~~~d--------~~aGad~I~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~i~vi 280 (366)
..+.++.+|+.+ +.+|.+..- .+.++ .+.|++.|- +. ..+..++.+.++++.+ ++||+
T Consensus 175 ~~e~v~avR~a~g~d~~l~vDan~~~~~~~a~~~~~~l~~~~i~~iE-------qP-~~~~~~~~~~~l~~~~--~iPIa 244 (397)
T 2qde_A 175 DIAMVAEVRRAVGDDVDLFIDINGAWTYDQALTTIRALEKYNLSKIE-------QP-LPAWDLDGMARLRGKV--ATPIY 244 (397)
T ss_dssp HHHHHHHHHHHHCTTSCEEEECTTCCCHHHHHHHHHHHGGGCCSCEE-------CC-SCTTCHHHHHHHHTTC--SSCEE
T ss_pred HHHHHHHHHHhhCCCCEEEEECCCCCCHHHHHHHHHHHHhCCCCEEE-------CC-CChhhHHHHHHHHhhC--CCCEE
Confidence 345677777775 477777732 34444 566777764 11 1233677788888766 79999
Q ss_pred EecCCCCHHHHHHHHHhC-cCEEEecH
Q 017781 281 LDGGVRRGTDVFKALALG-ASGIFIGR 306 (366)
Q Consensus 281 ~~GGI~~~~dv~kalalG-Ad~V~igr 306 (366)
+++.+.+..++.+++..| +|.|++--
T Consensus 245 ~dE~~~~~~~~~~~i~~~~~d~v~ik~ 271 (397)
T 2qde_A 245 ADESAQELHDLLAIINKGAADGLMIKT 271 (397)
T ss_dssp ESTTCCSHHHHHHHHHHTCCSEEEECH
T ss_pred EeCCcCCHHHHHHHHHcCCCCEEEEec
Confidence 999999999999999987 89999854
|
| >3sjn_A Mandelate racemase/muconate lactonizing protein; enolase, magnesium binding site, lyase; 1.90A {Shewanella pealeana} | Back alignment and structure |
|---|
Probab=95.22 E-value=0.085 Score=51.03 Aligned_cols=117 Identities=9% Similarity=0.059 Sum_probs=83.5
Q ss_pred CHHHHHHHHHHHHHcCCCEEEEecCCCCCcchhHHHhhhcCCCCccccccccccccCCCccccchhhHHHhhhccCCCCC
Q 017781 134 DRNVVAQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLTLKNFQGLDLGKMDEANDSGLAAYVAGQIDRSLS 213 (366)
Q Consensus 134 d~~~~~~~l~ra~~~G~~ai~vtvd~p~~g~r~~d~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~ 213 (366)
+++.+.+.++++.+.|++++-+.++++. .++..+
T Consensus 146 ~~e~~~~~a~~~~~~Gf~~iKlk~g~~g----------------------------------------------~~~~~d 179 (374)
T 3sjn_A 146 KPEDNVAIVQGLKDQGFSSIKFGGGVMG----------------------------------------------DDPDTD 179 (374)
T ss_dssp SGGGGHHHHHHHHTTTCSEEEEECTTTT----------------------------------------------SCHHHH
T ss_pred CHHHHHHHHHHHHHcCCCEEEeccCCCC----------------------------------------------CCHHHH
Confidence 3366777788888889999988765321 011224
Q ss_pred HHHHHHHHHhc--CCCEEEEec--cC-HHH--------HHcCCcEEEEcCCCccCCCCCcchHHHHHHHHHHcCCCceEE
Q 017781 214 WKDVKWLQTIT--KLPILVKGV--LT-AED--------VQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVF 280 (366)
Q Consensus 214 ~~~i~~lr~~~--~~pv~vK~v--~~-~~d--------~~aGad~I~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~i~vi 280 (366)
.+.++.+|+.+ +.+|.+..- .+ .++ .+.|+++|- +. ..+..++.+.++++.+ .+||+
T Consensus 180 ~~~v~avR~a~g~~~~l~vDan~~~~d~~~A~~~~~~l~~~~i~~iE-------qP-~~~~~~~~~~~l~~~~--~iPIa 249 (374)
T 3sjn_A 180 YAIVKAVREAAGPEMEVQIDLASKWHTCGHSAMMAKRLEEFNLNWIE-------EP-VLADSLISYEKLSRQV--SQKIA 249 (374)
T ss_dssp HHHHHHHHHHHCSSSEEEEECTTTTCSHHHHHHHHHHSGGGCCSEEE-------CS-SCTTCHHHHHHHHHHC--SSEEE
T ss_pred HHHHHHHHHHhCCCCeEEEECCCCCCCHHHHHHHHHHhhhcCceEEE-------CC-CCcccHHHHHHHHhhC--CCCEE
Confidence 56678888876 567888743 35 554 567888774 11 1223577888888887 79999
Q ss_pred EecCCCCHHHHHHHHHhC-cCEEEecH
Q 017781 281 LDGGVRRGTDVFKALALG-ASGIFIGR 306 (366)
Q Consensus 281 ~~GGI~~~~dv~kalalG-Ad~V~igr 306 (366)
+++-+.+..|+.++++.| +|.|++--
T Consensus 250 ~dE~~~~~~~~~~~l~~~~~d~v~~k~ 276 (374)
T 3sjn_A 250 GGESLTTRYEFQEFITKSNADIVQPDI 276 (374)
T ss_dssp ECTTCCHHHHHHHHHHHHCCSEECCBT
T ss_pred eCCCcCCHHHHHHHHHcCCCCEEEeCc
Confidence 999999999999999976 79998753
|
| >2qdd_A Mandelate racemase/muconate lactonizing enzyme; enolase, structural genomics, PSI, protein structu initiative, nysgrc; 2.30A {Roseovarius nubinhibens} PDB: 3fvd_B | Back alignment and structure |
|---|
Probab=95.21 E-value=0.42 Score=46.00 Aligned_cols=114 Identities=17% Similarity=0.168 Sum_probs=80.6
Q ss_pred CCHHHHHHHHHHHHHcCCCEEEEecCCCCCcchhHHHhhhcCCCCccccccccccccCCCccccchhhHHHhhhccCCCC
Q 017781 133 KDRNVVAQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLTLKNFQGLDLGKMDEANDSGLAAYVAGQIDRSL 212 (366)
Q Consensus 133 ~d~~~~~~~l~ra~~~G~~ai~vtvd~p~~g~r~~d~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~ 212 (366)
.+++.+.+.++++.+.|++++-+.+.++ +...
T Consensus 144 ~~~e~~~~~a~~~~~~Gf~~iKik~g~~------------------------------------------------~~~~ 175 (378)
T 2qdd_A 144 GTPDQMLGLIAEAAAQGYRTHSAKIGGS------------------------------------------------DPAQ 175 (378)
T ss_dssp CCHHHHHHHHHHHHHHTCCEEEEECCSS------------------------------------------------CHHH
T ss_pred CCHHHHHHHHHHHHHHhhhheeecCCCC------------------------------------------------ChHH
Confidence 5777777888888889999998766532 0112
Q ss_pred CHHHHHHHHHhc--CCCEEEEec--cCHHH-------HHcCCcEEEEcCCCccCCCCCcchHHHHHHHHHHcCCCceEEE
Q 017781 213 SWKDVKWLQTIT--KLPILVKGV--LTAED-------VQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFL 281 (366)
Q Consensus 213 ~~~~i~~lr~~~--~~pv~vK~v--~~~~d-------~~aGad~I~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~i~vi~ 281 (366)
..+.++.+|+.+ +.++.++.- .+.++ .+.|+ +|- +. -+ .++.+.++++.+ ++||++
T Consensus 176 ~~e~v~avr~a~g~~~~l~vDan~~~~~~~a~~~~~~l~~~i-~iE-------qP--~~-d~~~~~~l~~~~--~iPI~~ 242 (378)
T 2qdd_A 176 DIARIEAISAGLPDGHRVTFDVNRAWTPAIAVEVLNSVRARD-WIE-------QP--CQ-TLDQCAHVARRV--ANPIML 242 (378)
T ss_dssp HHHHHHHHHHSCCTTCEEEEECTTCCCHHHHHHHHTSCCCCC-EEE-------CC--SS-SHHHHHHHHTTC--CSCEEE
T ss_pred HHHHHHHHHHHhCCCCEEEEeCCCCCCHHHHHHHHHHhCCCc-EEE-------cC--CC-CHHHHHHHHHhC--CCCEEE
Confidence 345677777776 467777743 34554 11455 442 11 11 677888888766 799999
Q ss_pred ecCCCCHHHHHHHHHhC-cCEEEecHH
Q 017781 282 DGGVRRGTDVFKALALG-ASGIFIGRP 307 (366)
Q Consensus 282 ~GGI~~~~dv~kalalG-Ad~V~igr~ 307 (366)
++-+.+..|+.+++..| +|.|++-..
T Consensus 243 dE~~~~~~~~~~~i~~~~~d~v~ik~~ 269 (378)
T 2qdd_A 243 DECLHEFSDHLAAWSRGACEGVKIKPN 269 (378)
T ss_dssp CTTCCSHHHHHHHHHHTCCSEEEECHH
T ss_pred CCCcCCHHHHHHHHHhCCCCEEEeccc
Confidence 99999999999999987 899999654
|
| >3flu_A DHDPS, dihydrodipicolinate synthase; TIM barrel, beta-alpha-barrel, amino-acid biosynthesis, diaminopimelate biosynthesis; 2.00A {Neisseria meningitidis serogroup B} SCOP: c.1.10.0 | Back alignment and structure |
|---|
Probab=95.19 E-value=0.055 Score=50.79 Aligned_cols=103 Identities=18% Similarity=0.291 Sum_probs=65.8
Q ss_pred CCCCCHHHHHHHHHhcCCCEEEEeccCHHHHHcCCcEEEEcCCCccCCCCCcc-hHHHHHHHHHHcCCCceEEEecCCCC
Q 017781 209 DRSLSWKDVKWLQTITKLPILVKGVLTAEDVQAGAAGIIVSNHGARQLDYVPA-TIMALEEVVKATQGRIPVFLDGGVRR 287 (366)
Q Consensus 209 d~~~~~~~i~~lr~~~~~pv~vK~v~~~~d~~aGad~I~vs~~gg~~~~~~~~-~~~~l~~i~~~~~~~i~vi~~GGI~~ 287 (366)
|...+++.++++.+.. .+.|+|+|++.++.|....-... ..+++..+++.+.+++|||+--|=.+
T Consensus 22 dg~iD~~~l~~lv~~l--------------i~~Gv~gl~~~GttGE~~~Ls~~Er~~v~~~~~~~~~grvpviaGvg~~~ 87 (297)
T 3flu_A 22 DGSIHYEQLRDLIDWH--------------IENGTDGIVAVGTTGESATLSVEEHTAVIEAVVKHVAKRVPVIAGTGANN 87 (297)
T ss_dssp TSCBCHHHHHHHHHHH--------------HHTTCCEEEESSTTTTGGGSCHHHHHHHHHHHHHHHTTSSCEEEECCCSS
T ss_pred CCCcCHHHHHHHHHHH--------------HHcCCCEEEeCccccCcccCCHHHHHHHHHHHHHHhCCCCcEEEeCCCcC
Confidence 3456676666655532 56899999998876643221222 23455666667777899998656556
Q ss_pred HHHHHH----HHHhCcCEEEecHHHHHHhhhcCHHHHHHHHHHHH
Q 017781 288 GTDVFK----ALALGASGIFIGRPVVYSLAAEGEKGVRRVLEMLR 328 (366)
Q Consensus 288 ~~dv~k----alalGAd~V~igr~~l~~l~~~G~~gv~~~~~~l~ 328 (366)
-.++++ |-.+|||++++-.|+++.. .++++.++++.+.
T Consensus 88 t~~ai~la~~a~~~Gadavlv~~P~y~~~---~~~~l~~~f~~va 129 (297)
T 3flu_A 88 TVEAIALSQAAEKAGADYTLSVVPYYNKP---SQEGIYQHFKTIA 129 (297)
T ss_dssp HHHHHHHHHHHHHTTCSEEEEECCCSSCC---CHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCCEEEECCCCCCCC---CHHHHHHHHHHHH
Confidence 666553 3358999999999987642 3566555555443
|
| >1vhc_A Putative KHG/KDPG aldolase; structural genomics, unknown function; HET: MSE; 1.89A {Haemophilus influenzae} SCOP: c.1.10.1 | Back alignment and structure |
|---|
Probab=95.18 E-value=0.06 Score=48.50 Aligned_cols=76 Identities=21% Similarity=0.243 Sum_probs=51.3
Q ss_pred HHHHHHHHHhcC-CCEEEEeccCHHH----HHcCCcEEEEcCCCccCCCCCcchHHHHHHHHHHcCCCceEEEecCCCCH
Q 017781 214 WKDVKWLQTITK-LPILVKGVLTAED----VQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRG 288 (366)
Q Consensus 214 ~~~i~~lr~~~~-~pv~vK~v~~~~d----~~aGad~I~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~i~vi~~GGI~~~ 288 (366)
.+.++.+++.++ +-+....+.+.++ .++|||+|+..+ ...+.+..+++ . .++++. |+.|+
T Consensus 56 ~~~i~~l~~~~~~l~vgaGtvl~~d~~~~A~~aGAd~v~~p~----------~d~~v~~~ar~-~--g~~~i~--Gv~t~ 120 (224)
T 1vhc_A 56 ADAIRLLRANRPDFLIAAGTVLTAEQVVLAKSSGADFVVTPG----------LNPKIVKLCQD-L--NFPITP--GVNNP 120 (224)
T ss_dssp HHHHHHHHHHCTTCEEEEESCCSHHHHHHHHHHTCSEEECSS----------CCHHHHHHHHH-T--TCCEEC--EECSH
T ss_pred HHHHHHHHHhCcCcEEeeCcEeeHHHHHHHHHCCCCEEEECC----------CCHHHHHHHHH-h--CCCEEe--ccCCH
Confidence 456888888874 2222233345554 999999995321 23344444444 4 456655 49999
Q ss_pred HHHHHHHHhCcCEEEe
Q 017781 289 TDVFKALALGASGIFI 304 (366)
Q Consensus 289 ~dv~kalalGAd~V~i 304 (366)
+++.+|+.+|||.|.+
T Consensus 121 ~e~~~A~~~Gad~vk~ 136 (224)
T 1vhc_A 121 MAIEIALEMGISAVKF 136 (224)
T ss_dssp HHHHHHHHTTCCEEEE
T ss_pred HHHHHHHHCCCCEEEE
Confidence 9999999999999998
|
| >1xky_A Dihydrodipicolinate synthase; TIM barrel, , lysine biosynthesis;spine, lyase; 1.94A {Bacillus anthracis} SCOP: c.1.10.1 PDB: 1xl9_A 3hij_A* | Back alignment and structure |
|---|
Probab=95.18 E-value=0.053 Score=51.01 Aligned_cols=102 Identities=14% Similarity=0.295 Sum_probs=64.2
Q ss_pred CCCCCHHHHHHHHHhcCCCEEEEeccCHHHHHcCCcEEEEcCCCccCCCCCcc-hHHHHHHHHHHcCCCceEEEecCCCC
Q 017781 209 DRSLSWKDVKWLQTITKLPILVKGVLTAEDVQAGAAGIIVSNHGARQLDYVPA-TIMALEEVVKATQGRIPVFLDGGVRR 287 (366)
Q Consensus 209 d~~~~~~~i~~lr~~~~~pv~vK~v~~~~d~~aGad~I~vs~~gg~~~~~~~~-~~~~l~~i~~~~~~~i~vi~~GGI~~ 287 (366)
|...+++.++++.+.. .+.|+|+|++.++.|....-... ..+++..+++.+.+++|||+--|=.+
T Consensus 27 dg~iD~~~l~~lv~~l--------------i~~Gv~gl~v~GtTGE~~~Ls~eEr~~v~~~~~~~~~grvpViaGvg~~~ 92 (301)
T 1xky_A 27 NGNIDFAKTTKLVNYL--------------IDNGTTAIVVGGTTGESPTLTSEEKVALYRHVVSVVDKRVPVIAGTGSNN 92 (301)
T ss_dssp TSSBCHHHHHHHHHHH--------------HHTTCCEEEESSTTTTGGGSCHHHHHHHHHHHHHHHTTSSCEEEECCCSC
T ss_pred CCCcCHHHHHHHHHHH--------------HHcCCCEEEECccccChhhCCHHHHHHHHHHHHHHhCCCceEEeCCCCCC
Confidence 3456777666655532 56799999998876643211221 23455666666777899887656555
Q ss_pred HHHHHH----HHHhCcCEEEecHHHHHHhhhcCHHHHHHHHHHH
Q 017781 288 GTDVFK----ALALGASGIFIGRPVVYSLAAEGEKGVRRVLEML 327 (366)
Q Consensus 288 ~~dv~k----alalGAd~V~igr~~l~~l~~~G~~gv~~~~~~l 327 (366)
-.++++ |-.+|||++++-.|+++.. .++++.++++.+
T Consensus 93 t~~ai~la~~A~~~Gadavlv~~P~y~~~---s~~~l~~~f~~v 133 (301)
T 1xky_A 93 THASIDLTKKATEVGVDAVMLVAPYYNKP---SQEGMYQHFKAI 133 (301)
T ss_dssp HHHHHHHHHHHHHTTCSEEEEECCCSSCC---CHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCCCEEEEcCCCCCCC---CHHHHHHHHHHH
Confidence 555543 3348999999999987642 455555555444
|
| >1vs1_A 3-deoxy-7-phosphoheptulonate synthase; (beta/alpha)8 barrel, transferase; HET: PEP; 2.30A {Aeropyrum pernix} | Back alignment and structure |
|---|
Probab=95.17 E-value=0.52 Score=43.66 Aligned_cols=201 Identities=21% Similarity=0.288 Sum_probs=105.8
Q ss_pred CCccceeEcCccc--CCceEecccccccccCChhhHHHHHHHHHcCCceec-CCCCCCCHHHHhccCCCceEEEeeecCC
Q 017781 58 KIDMNTTVLGFKI--SMPIMIAPTAMQKMAHPEGEYATARAASAAGTIMTL-SSWSTSSVEEVASTGPGIRFFQLYVYKD 134 (366)
Q Consensus 58 ~vd~st~l~g~~l--~~Pi~iApm~~~~l~~~~~e~~la~aa~~~G~~~~v-s~~~~~~~e~i~~~~~~~~~~Qly~~~d 134 (366)
.-++..++.+..+ ..|++||=.+ .....+.-..+++.+++.|.-.+- ..+.+.+ . ++.||- ..
T Consensus 22 ~~~~~i~i~~~~iG~~~~~vIAgpc--~~~~~e~a~~~a~~~k~~ga~~~k~~~~kprt-------s--~~~f~g---~g 87 (276)
T 1vs1_A 22 RRETVVEVEGVRIGGGSKAVIAGPC--SVESWEQVREAALAVKEAGAHMLRGGAFKPRT-------S--PYSFQG---LG 87 (276)
T ss_dssp CSCCCEEETTEEEBTTBCEEEEECS--BCCCHHHHHHHHHHHHHHTCSEEECBSSCCCS-------S--TTSCCC---CT
T ss_pred CCCcEEEECCEEECCCCeEEEEecC--CCCCHHHHHHHHHHHHHhCCCEEEeEEEeCCC-------C--hhhhcC---CC
Confidence 3445555544332 1377777553 222233345889999999988763 2332222 1 112331 13
Q ss_pred HHHHHHHHHHHHHcCCCEEEEecCCCCCcchhHHHhhhcCCCCccccccccccccCCCccccchhhHHHhhhccCCC-CC
Q 017781 135 RNVVAQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLTLKNFQGLDLGKMDEANDSGLAAYVAGQIDRS-LS 213 (366)
Q Consensus 135 ~~~~~~~l~ra~~~G~~ai~vtvd~p~~g~r~~d~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~-~~ 213 (366)
.+....+.+.+++.|...+.==.| + ..-+....+ ++- +. .+... .+
T Consensus 88 ~~gl~~l~~~~~~~Gl~~~te~~d-~----~~~~~l~~~-vd~--------------------------~k-Igs~~~~n 134 (276)
T 1vs1_A 88 LEGLKLLRRAGDEAGLPVVTEVLD-P----RHVETVSRY-ADM--------------------------LQ-IGARNMQN 134 (276)
T ss_dssp HHHHHHHHHHHHHHTCCEEEECCC-G----GGHHHHHHH-CSE--------------------------EE-ECGGGTTC
T ss_pred HHHHHHHHHHHHHcCCcEEEecCC-H----HHHHHHHHh-CCe--------------------------EE-ECcccccC
Confidence 455566666677788776532111 1 111111111 000 00 00011 13
Q ss_pred HHHHHHHHHhcCCCEEEEecc--CHHH--------HHcCCcEEEEcCCCccCCC---CCcchHHHHHHHHHHcCCCceEE
Q 017781 214 WKDVKWLQTITKLPILVKGVL--TAED--------VQAGAAGIIVSNHGARQLD---YVPATIMALEEVVKATQGRIPVF 280 (366)
Q Consensus 214 ~~~i~~lr~~~~~pv~vK~v~--~~~d--------~~aGad~I~vs~~gg~~~~---~~~~~~~~l~~i~~~~~~~i~vi 280 (366)
...++.+-+ +++||++|..+ +.++ ...|.+-+++--+|.+... .....+..++.+++.. .+||+
T Consensus 135 ~~ll~~~a~-~~kPV~lk~G~~~t~~ei~~Ave~i~~~Gn~~i~L~~Rg~~~yp~y~~~~vdl~~i~~lk~~~--~lpVi 211 (276)
T 1vs1_A 135 FPLLREVGR-SGKPVLLKRGFGNTVEELLAAAEYILLEGNWQVVLVERGIRTFEPSTRFTLDVAAVAVLKEAT--HLPVI 211 (276)
T ss_dssp HHHHHHHHH-HTCCEEEECCTTCCHHHHHHHHHHHHHTTCCCEEEEECCBCCSCCSSSSBCBHHHHHHHHHHB--SSCEE
T ss_pred HHHHHHHHc-cCCeEEEcCCCCCCHHHHHHHHHHHHHcCCCeEEEEeCCcCCCCCcCcchhCHHHHHHHHHHh--CCCEE
Confidence 445666554 58999999664 6665 6678744544333443321 1223566677777765 68987
Q ss_pred Eec----CCCC--HHHHHHHHHhCcCEEEecHHH
Q 017781 281 LDG----GVRR--GTDVFKALALGASGIFIGRPV 308 (366)
Q Consensus 281 ~~G----GI~~--~~dv~kalalGAd~V~igr~~ 308 (366)
++. |.+. ..-...|+++||++++|=+-+
T Consensus 212 ~dssH~~g~~~~~~~~~~aAva~Ga~Gl~IE~H~ 245 (276)
T 1vs1_A 212 VDPSHPAGRRSLVPALAKAGLAAGADGLIVEVHP 245 (276)
T ss_dssp ECCHHHHCSGGGHHHHHHHHHHTTCSEEEEEBCS
T ss_pred EeCCCCCCccchHHHHHHHHHHcCCCEEEEEecC
Confidence 753 4443 344556788999999999865
|
| >3jva_A Dipeptide epimerase; enolase superfamily, isomerase; 1.70A {Enterococcus faecalis V583} PDB: 3jw7_A* 3jzu_A* 3k1g_A* 3kum_A* | Back alignment and structure |
|---|
Probab=95.16 E-value=0.18 Score=48.23 Aligned_cols=116 Identities=17% Similarity=0.176 Sum_probs=80.0
Q ss_pred CCHHHHHHHHHHHHHcCCCEEEEecCCCCCcchhHHHhhhcCCCCccccccccccccCCCccccchhhHHHhhhccCCCC
Q 017781 133 KDRNVVAQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLTLKNFQGLDLGKMDEANDSGLAAYVAGQIDRSL 212 (366)
Q Consensus 133 ~d~~~~~~~l~ra~~~G~~ai~vtvd~p~~g~r~~d~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~ 212 (366)
.+++.+.+.++++.+.|++++-+.+++.. ..
T Consensus 138 ~~~~~~~~~a~~~~~~G~~~~K~K~g~~~-------------------------------------------------~~ 168 (354)
T 3jva_A 138 DEPNVMAQKAVEKVKLGFDTLKIKVGTGI-------------------------------------------------EA 168 (354)
T ss_dssp CCHHHHHHHHHHHHHTTCSEEEEECCSCH-------------------------------------------------HH
T ss_pred CCHHHHHHHHHHHHHhCCCeEEEEeCCCH-------------------------------------------------HH
Confidence 56777777777777889999877654320 11
Q ss_pred CHHHHHHHHHhc--CCCEEEEec--cCHHH--------HHcCCcEEEEcCCCccCCCCCcchHHHHHHHHHHcCCCceEE
Q 017781 213 SWKDVKWLQTIT--KLPILVKGV--LTAED--------VQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVF 280 (366)
Q Consensus 213 ~~~~i~~lr~~~--~~pv~vK~v--~~~~d--------~~aGad~I~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~i~vi 280 (366)
+.+.++.+|+.+ +.++.+..- .+.++ .+.|+++|- + ...+..++.+.++++.+ .+||+
T Consensus 169 d~~~v~avR~a~g~~~~l~vDan~~~~~~~a~~~~~~L~~~~i~~iE-------q-P~~~~d~~~~~~l~~~~--~iPIa 238 (354)
T 3jva_A 169 DIARVKAIREAVGFDIKLRLDANQAWTPKDAVKAIQALADYQIELVE-------Q-PVKRRDLEGLKYVTSQV--NTTIM 238 (354)
T ss_dssp HHHHHHHHHHHHCTTSEEEEECTTCSCHHHHHHHHHHTTTSCEEEEE-------C-CSCTTCHHHHHHHHHHC--SSEEE
T ss_pred HHHHHHHHHHHcCCCCeEEEECCCCCCHHHHHHHHHHHHhcCCCEEE-------C-CCChhhHHHHHHHHHhC--CCCEE
Confidence 345566777765 456666632 34443 445666664 1 11223577788888877 79999
Q ss_pred EecCCCCHHHHHHHHHhC-cCEEEecHH
Q 017781 281 LDGGVRRGTDVFKALALG-ASGIFIGRP 307 (366)
Q Consensus 281 ~~GGI~~~~dv~kalalG-Ad~V~igr~ 307 (366)
+++.+.+..|+.+++..| +|.|++--.
T Consensus 239 ~dE~~~~~~~~~~~l~~~~~d~v~~k~~ 266 (354)
T 3jva_A 239 ADESCFDAQDALELVKKGTVDVINIKLM 266 (354)
T ss_dssp ESTTCCSHHHHHHHHHHTCCSEEEECHH
T ss_pred EcCCcCCHHHHHHHHHcCCCCEEEECch
Confidence 999999999999999987 799999754
|
| >3eez_A Putative mandelate racemase/muconate lactonizing enzyme; structural genomics, unknown function, PSI-2, protein structure initiative; 2.80A {Silicibacter pomeroyi} | Back alignment and structure |
|---|
Probab=95.14 E-value=0.29 Score=47.35 Aligned_cols=115 Identities=14% Similarity=0.062 Sum_probs=78.9
Q ss_pred cCCHHHHHHHHHHHHHcCCCEEEEecCCCCCcchhHHHhhhcCCCCccccccccccccCCCccccchhhHHHhhhccCCC
Q 017781 132 YKDRNVVAQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLTLKNFQGLDLGKMDEANDSGLAAYVAGQIDRS 211 (366)
Q Consensus 132 ~~d~~~~~~~l~ra~~~G~~ai~vtvd~p~~g~r~~d~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~ 211 (366)
..+++.+.+.++++.+.|++++-+.+++. +.
T Consensus 143 ~~~~e~~~~~a~~~~~~G~~~iKiK~G~~-------------------------------------------------~~ 173 (378)
T 3eez_A 143 AKSVEETRAVIDRYRQRGYVAHSVKIGGD-------------------------------------------------VE 173 (378)
T ss_dssp SCCHHHHHHHHHHHHHTTCCEEEEECCSC-------------------------------------------------HH
T ss_pred CCCHHHHHHHHHHHHhCCCCEEEeccCCC-------------------------------------------------HH
Confidence 35778788888888889999988776531 01
Q ss_pred CCHHHHHHHHHhc--CCCEEEEec--cCHHH--------HHcCCcEEEEcCCCccCCCCCcchHHHHHHHHHHcCCCceE
Q 017781 212 LSWKDVKWLQTIT--KLPILVKGV--LTAED--------VQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPV 279 (366)
Q Consensus 212 ~~~~~i~~lr~~~--~~pv~vK~v--~~~~d--------~~aGad~I~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~i~v 279 (366)
.+.+.++.+|+.+ +.+|.++.- .+.++ .+.|+ +|- + ..+.++.+.++++.+ .+||
T Consensus 174 ~d~~~v~avR~a~g~~~~l~vDan~~~~~~~a~~~~~~l~~~~i-~iE-------q---P~~~~~~~~~l~~~~--~iPI 240 (378)
T 3eez_A 174 RDIARIRDVEDIREPGEIVLYDVNRGWTRQQALRVMRATEDLHV-MFE-------Q---PGETLDDIAAIRPLH--SAPV 240 (378)
T ss_dssp HHHHHHHHHTTSCCTTCEEEEECTTCCCHHHHHHHHHHTGGGTC-CEE-------C---CSSSHHHHHHTGGGC--CCCE
T ss_pred HHHHHHHHHHHHcCCCceEEEECCCCCCHHHHHHHHHHhccCCe-EEe-------c---CCCCHHHHHHHHhhC--CCCE
Confidence 1334566666665 456666632 23333 44555 442 1 112567777777666 7999
Q ss_pred EEecCCCCHHHHHHHHHhC-cCEEEecHHH
Q 017781 280 FLDGGVRRGTDVFKALALG-ASGIFIGRPV 308 (366)
Q Consensus 280 i~~GGI~~~~dv~kalalG-Ad~V~igr~~ 308 (366)
++++.+.+..|+.+++..| +|.|++....
T Consensus 241 a~dE~~~~~~~~~~~l~~~~~d~v~ik~~~ 270 (378)
T 3eez_A 241 SVDECLVTLQDAARVARDGLAEVFGIKLNR 270 (378)
T ss_dssp EECTTCCSHHHHHHHHHTTCCSEEEEEHHH
T ss_pred EECCCCCCHHHHHHHHHcCCCCEEEeCchh
Confidence 9999999999999999987 8999998654
|
| >3si9_A DHDPS, dihydrodipicolinate synthase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, TIM barrel; 2.10A {Bartonella henselae} | Back alignment and structure |
|---|
Probab=95.13 E-value=0.042 Score=52.05 Aligned_cols=102 Identities=14% Similarity=0.202 Sum_probs=65.5
Q ss_pred CCCCHHHHHHHHHhcCCCEEEEeccCHHHHHcCCcEEEEcCCCccCCCCCcc-hHHHHHHHHHHcCCCceEEEecCCCCH
Q 017781 210 RSLSWKDVKWLQTITKLPILVKGVLTAEDVQAGAAGIIVSNHGARQLDYVPA-TIMALEEVVKATQGRIPVFLDGGVRRG 288 (366)
Q Consensus 210 ~~~~~~~i~~lr~~~~~pv~vK~v~~~~d~~aGad~I~vs~~gg~~~~~~~~-~~~~l~~i~~~~~~~i~vi~~GGI~~~ 288 (366)
...+++.++++.+.. .+.|+|+|++.+..|....-... ..+++..+++.+.+++|||+--|=.+-
T Consensus 38 g~iD~~~l~~li~~l--------------i~~Gv~Gl~v~GtTGE~~~Ls~~Er~~v~~~~v~~~~grvpViaGvg~~st 103 (315)
T 3si9_A 38 GAIDEKAFCNFVEWQ--------------ITQGINGVSPVGTTGESPTLTHEEHKRIIELCVEQVAKRVPVVAGAGSNST 103 (315)
T ss_dssp SCBCHHHHHHHHHHH--------------HHTTCSEEECSSTTTTGGGSCHHHHHHHHHHHHHHHTTSSCBEEECCCSSH
T ss_pred CCcCHHHHHHHHHHH--------------HHcCCCEEEeCccccCccccCHHHHHHHHHHHHHHhCCCCcEEEeCCCCCH
Confidence 445666666555432 56899999988876632211111 234566666677778999886666666
Q ss_pred HHHHH----HHHhCcCEEEecHHHHHHhhhcCHHHHHHHHHHHH
Q 017781 289 TDVFK----ALALGASGIFIGRPVVYSLAAEGEKGVRRVLEMLR 328 (366)
Q Consensus 289 ~dv~k----alalGAd~V~igr~~l~~l~~~G~~gv~~~~~~l~ 328 (366)
.++++ |-.+|||++++-.|+++.. .++++.++++.+.
T Consensus 104 ~~ai~la~~A~~~Gadavlv~~P~y~~~---~~~~l~~~f~~va 144 (315)
T 3si9_A 104 SEAVELAKHAEKAGADAVLVVTPYYNRP---NQRGLYTHFSSIA 144 (315)
T ss_dssp HHHHHHHHHHHHTTCSEEEEECCCSSCC---CHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCCCEEEECCCCCCCC---CHHHHHHHHHHHH
Confidence 66653 4458999999999987642 4566555555443
|
| >2wkj_A N-acetylneuraminate lyase; directed evolution, sialic acid mimetics, aldolase, S base, carbohydrate metabolism, N-acetylneuraminic acid LYAS; HET: KPI PYR; 1.45A {Escherichia coli} PDB: 2wnq_A 2xfw_A* 2wpb_A* 2wnz_A* 2ygy_A* 2wo5_A* 2wnn_A* 3lbm_A 3lbc_A 3lcf_A 3lcl_A 3lcg_A 3lch_A 3lci_A 1hl2_A 1fdy_A 1fdz_A 1nal_1 3lcx_A 3lcw_A | Back alignment and structure |
|---|
Probab=95.12 E-value=0.064 Score=50.46 Aligned_cols=106 Identities=15% Similarity=0.199 Sum_probs=67.8
Q ss_pred CCCCCHHHHHHHHHhcCCCEEEEeccCHHHHHcCCcEEEEcCCCccCCCCCcc-hHHHHHHHHHHcCCCceEEEecCCCC
Q 017781 209 DRSLSWKDVKWLQTITKLPILVKGVLTAEDVQAGAAGIIVSNHGARQLDYVPA-TIMALEEVVKATQGRIPVFLDGGVRR 287 (366)
Q Consensus 209 d~~~~~~~i~~lr~~~~~pv~vK~v~~~~d~~aGad~I~vs~~gg~~~~~~~~-~~~~l~~i~~~~~~~i~vi~~GGI~~ 287 (366)
|..++++.++++.+.. .+.|+|+|++.++.|....-... ..+++..+++.+.+++|||+--|=.+
T Consensus 26 dg~iD~~~l~~lv~~l--------------i~~Gv~Gl~v~GtTGE~~~Ls~eEr~~v~~~~~~~~~grvpViaGvg~~~ 91 (303)
T 2wkj_A 26 QQALDKASLRRLVQFN--------------IQQGIDGLYVGGSTGEAFVQSLSEREQVLEIVAEEAKGKIKLIAHVGCVS 91 (303)
T ss_dssp TSSBCHHHHHHHHHHH--------------HHTTCSEEEESSTTTTGGGSCHHHHHHHHHHHHHHHTTTSEEEEECCCSS
T ss_pred CCCcCHHHHHHHHHHH--------------HHcCCCEEEECeeccChhhCCHHHHHHHHHHHHHHhCCCCcEEEecCCCC
Confidence 3456777666655532 56799999998876643211221 23455666666777899987555545
Q ss_pred HHHHHH----HHHhCcCEEEecHHHHHHhhhcCHHHHHHHHHHHHHHH
Q 017781 288 GTDVFK----ALALGASGIFIGRPVVYSLAAEGEKGVRRVLEMLREEF 331 (366)
Q Consensus 288 ~~dv~k----alalGAd~V~igr~~l~~l~~~G~~gv~~~~~~l~~el 331 (366)
-.++++ |-.+|||++++-.|+++.. .++++.++++.+.+..
T Consensus 92 t~~ai~la~~A~~~Gadavlv~~P~y~~~---s~~~l~~~f~~va~a~ 136 (303)
T 2wkj_A 92 TAESQQLAASAKRYGFDAVSAVTPFYYPF---SFEEHCDHYRAIIDSA 136 (303)
T ss_dssp HHHHHHHHHHHHHHTCSEEEEECCCSSCC---CHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCCEEEecCCCCCCC---CHHHHHHHHHHHHHhC
Confidence 555543 3347999999999987642 5677766666665543
|
| >2yxg_A DHDPS, dihydrodipicolinate synthase; MJ0244, TIM beta/alpha-barrel fold, structural genomics, NPPSFA; 2.20A {Methanocaldococcus jannaschii DSM2661} | Back alignment and structure |
|---|
Probab=95.10 E-value=0.062 Score=50.15 Aligned_cols=87 Identities=18% Similarity=0.332 Sum_probs=55.9
Q ss_pred HHcCCcEEEEcCCCccCCCCCcc-hHHHHHHHHHHcCCCceEEEecCCCCHHHHHH----HHHhCcCEEEecHHHHHHhh
Q 017781 239 VQAGAAGIIVSNHGARQLDYVPA-TIMALEEVVKATQGRIPVFLDGGVRRGTDVFK----ALALGASGIFIGRPVVYSLA 313 (366)
Q Consensus 239 ~~aGad~I~vs~~gg~~~~~~~~-~~~~l~~i~~~~~~~i~vi~~GGI~~~~dv~k----alalGAd~V~igr~~l~~l~ 313 (366)
.+.|+|+|++.++.|....-... ..+++..+++.+.+++|||+--|=.+-.++++ |-.+|||++++-.|+++..
T Consensus 31 i~~Gv~gl~~~GttGE~~~Ls~~Er~~v~~~~~~~~~gr~pviaGvg~~~t~~ai~la~~a~~~Gadavlv~~P~y~~~- 109 (289)
T 2yxg_A 31 IENGVSGIVAVGTTGESPTLSHEEHKKVIEKVVDVVNGRVQVIAGAGSNCTEEAIELSVFAEDVGADAVLSITPYYNKP- 109 (289)
T ss_dssp HHTTCSEEEESSTTTTGGGSCHHHHHHHHHHHHHHHTTSSEEEEECCCSSHHHHHHHHHHHHHHTCSEEEEECCCSSCC-
T ss_pred HHCCCCEEEECccccChhhCCHHHHHHHHHHHHHHhCCCCcEEEeCCCCCHHHHHHHHHHHHhcCCCEEEECCCCCCCC-
Confidence 56799999998876643211221 23455666666777899887655555555543 3347999999999987642
Q ss_pred hcCHHHHHHHHHHHH
Q 017781 314 AEGEKGVRRVLEMLR 328 (366)
Q Consensus 314 ~~G~~gv~~~~~~l~ 328 (366)
.++++.++++.+.
T Consensus 110 --s~~~l~~~f~~ia 122 (289)
T 2yxg_A 110 --TQEGLRKHFGKVA 122 (289)
T ss_dssp --CHHHHHHHHHHHH
T ss_pred --CHHHHHHHHHHHH
Confidence 4566555554443
|
| >2ehh_A DHDPS, dihydrodipicolinate synthase; structural genomics, NPPSFA, national project on protein structural and functional analyses; 1.90A {Aquifex aeolicus} | Back alignment and structure |
|---|
Probab=95.09 E-value=0.059 Score=50.43 Aligned_cols=87 Identities=21% Similarity=0.283 Sum_probs=55.8
Q ss_pred HHcCCcEEEEcCCCccCCCCCcc-hHHHHHHHHHHcCCCceEEEecCCCCHHHHHH----HHHhCcCEEEecHHHHHHhh
Q 017781 239 VQAGAAGIIVSNHGARQLDYVPA-TIMALEEVVKATQGRIPVFLDGGVRRGTDVFK----ALALGASGIFIGRPVVYSLA 313 (366)
Q Consensus 239 ~~aGad~I~vs~~gg~~~~~~~~-~~~~l~~i~~~~~~~i~vi~~GGI~~~~dv~k----alalGAd~V~igr~~l~~l~ 313 (366)
.+.|+|+|++.++.|....-... ..+++..+++.+.+++|||+--|=.+-.++++ |-.+|||++++-.|+++..
T Consensus 31 i~~Gv~gl~~~GttGE~~~Ls~~Er~~v~~~~~~~~~grvpviaGvg~~~t~~ai~la~~A~~~Gadavlv~~P~y~~~- 109 (294)
T 2ehh_A 31 VDNGTDAILVCGTTGESPTLTFEEHEKVIEFAVKRAAGRIKVIAGTGGNATHEAVHLTAHAKEVGADGALVVVPYYNKP- 109 (294)
T ss_dssp HTTTCCEEEESSTTTTGGGSCHHHHHHHHHHHHHHHTTSSEEEEECCCSCHHHHHHHHHHHHHTTCSEEEEECCCSSCC-
T ss_pred HHCCCCEEEECccccChhhCCHHHHHHHHHHHHHHhCCCCcEEEecCCCCHHHHHHHHHHHHhcCCCEEEECCCCCCCC-
Confidence 46799999998876643211221 23456666666777899987666555555543 3348999999999987642
Q ss_pred hcCHHHHHHHHHHHH
Q 017781 314 AEGEKGVRRVLEMLR 328 (366)
Q Consensus 314 ~~G~~gv~~~~~~l~ 328 (366)
.++++.++++.+.
T Consensus 110 --s~~~l~~~f~~va 122 (294)
T 2ehh_A 110 --TQRGLYEHFKTVA 122 (294)
T ss_dssp --CHHHHHHHHHHHH
T ss_pred --CHHHHHHHHHHHH
Confidence 4555555544443
|
| >2r8w_A AGR_C_1641P; APC7498, dihydrodipicolinate synthase, agrobacterium tumefac C58, structural genomics, PSI-2; HET: MSE; 1.80A {Agrobacterium tumefaciens str} | Back alignment and structure |
|---|
Probab=95.03 E-value=0.059 Score=51.44 Aligned_cols=103 Identities=13% Similarity=0.088 Sum_probs=64.3
Q ss_pred CCCCHHHHHHHHHhcCCCEEEEeccCHHHHHcCCcEEEEcCCCccCCCCCcc-hHHHHHHHHHHcCCCceEEEecCCCCH
Q 017781 210 RSLSWKDVKWLQTITKLPILVKGVLTAEDVQAGAAGIIVSNHGARQLDYVPA-TIMALEEVVKATQGRIPVFLDGGVRRG 288 (366)
Q Consensus 210 ~~~~~~~i~~lr~~~~~pv~vK~v~~~~d~~aGad~I~vs~~gg~~~~~~~~-~~~~l~~i~~~~~~~i~vi~~GGI~~~ 288 (366)
..++++.++++.+.. .+.|+|+|++.++.|....-... ..+++..+++.+.+++|||+--|=.+-
T Consensus 50 g~iD~~~l~~lv~~l--------------i~~Gv~Gl~v~GtTGE~~~Ls~eEr~~vi~~~ve~~~grvpViaGvg~~st 115 (332)
T 2r8w_A 50 GRVDIEAFSALIARL--------------DAAEVDSVGILGSTGIYMYLTREERRRAIEAAATILRGRRTLMAGIGALRT 115 (332)
T ss_dssp CCBCHHHHHHHHHHH--------------HHHTCSEEEESSTTTTGGGSCHHHHHHHHHHHHHHHTTSSEEEEEECCSSH
T ss_pred CCcCHHHHHHHHHHH--------------HHcCCCEEEECccccChhhCCHHHHHHHHHHHHHHhCCCCcEEEecCCCCH
Confidence 456666665555432 56799999998876643211211 234566666677778999875554455
Q ss_pred HHHHH----HHHhCcCEEEecHHHHHHhhhcCHHHHHHHHHHHHH
Q 017781 289 TDVFK----ALALGASGIFIGRPVVYSLAAEGEKGVRRVLEMLRE 329 (366)
Q Consensus 289 ~dv~k----alalGAd~V~igr~~l~~l~~~G~~gv~~~~~~l~~ 329 (366)
.++++ |-.+|||+|++-.|+++.. .++++.++++.+.+
T Consensus 116 ~eai~la~~A~~~Gadavlv~~P~Y~~~---s~~~l~~~f~~VA~ 157 (332)
T 2r8w_A 116 DEAVALAKDAEAAGADALLLAPVSYTPL---TQEEAYHHFAAVAG 157 (332)
T ss_dssp HHHHHHHHHHHHHTCSEEEECCCCSSCC---CHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCCCEEEECCCCCCCC---CHHHHHHHHHHHHH
Confidence 55543 3348999999999987642 45666555555443
|
| >2gdq_A YITF; mandelate racemase/muconate lactonizing enzyme, TIM-barrel, octamer, structural genomics, PSI; 1.80A {Bacillus subtilis subsp} SCOP: c.1.11.2 d.54.1.1 PDB: 2gge_A | Back alignment and structure |
|---|
Probab=95.02 E-value=0.11 Score=50.41 Aligned_cols=115 Identities=10% Similarity=0.048 Sum_probs=80.6
Q ss_pred CCH---HHHHHHHHHHHHcCCCEEEEecCCCCCcchhHHHhhhcCCCCccccccccccccCCCccccchhhHHHhhhccC
Q 017781 133 KDR---NVVAQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLTLKNFQGLDLGKMDEANDSGLAAYVAGQID 209 (366)
Q Consensus 133 ~d~---~~~~~~l~ra~~~G~~ai~vtvd~p~~g~r~~d~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d 209 (366)
.++ +.+.+.++++.+.|++++-+.+..+ +
T Consensus 135 ~~~~~~e~~~~~a~~~~~~Gf~~vKik~g~~------------------------------------------------~ 166 (382)
T 2gdq_A 135 DSPQWISRSVSNVEAQLKKGFEQIKVKIGGT------------------------------------------------S 166 (382)
T ss_dssp SSTTHHHHHHHHHHHHHTTTCCEEEEECSSS------------------------------------------------C
T ss_pred CCcccHHHHHHHHHHHHHcCCCEEEEcCCCC------------------------------------------------C
Confidence 456 6677777888889999987765321 1
Q ss_pred CCCCHHHHHHHHHhc--CCCEEEEec--cCHHH--------HHc-CCcEEEEcCCCccCCCCCcchHHHHHHHHHHcCCC
Q 017781 210 RSLSWKDVKWLQTIT--KLPILVKGV--LTAED--------VQA-GAAGIIVSNHGARQLDYVPATIMALEEVVKATQGR 276 (366)
Q Consensus 210 ~~~~~~~i~~lr~~~--~~pv~vK~v--~~~~d--------~~a-Gad~I~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~ 276 (366)
.....+.++.+|+.+ +.++.+..- .+.++ .+. |+++|- +. ..+..++.+.++++.+ +
T Consensus 167 ~~~d~e~v~avR~a~G~d~~l~vDan~~~~~~~a~~~~~~l~~~~~i~~iE-------qP-~~~~d~~~~~~l~~~~--~ 236 (382)
T 2gdq_A 167 FKEDVRHINALQHTAGSSITMILDANQSYDAAAAFKWERYFSEWTNIGWLE-------EP-LPFDQPQDYAMLRSRL--S 236 (382)
T ss_dssp HHHHHHHHHHHHHHHCTTSEEEEECTTCCCHHHHHTTHHHHTTCSCEEEEE-------CC-SCSSCHHHHHHHHTTC--S
T ss_pred HHHHHHHHHHHHHhhCCCCEEEEECCCCCCHHHHHHHHHHHhhccCCeEEE-------CC-CCcccHHHHHHHHhhC--C
Confidence 112446677888776 577777743 35554 445 666663 11 1234677788888776 7
Q ss_pred ceEEEecCCCCHHHHHHHHHhC-cCEEEec
Q 017781 277 IPVFLDGGVRRGTDVFKALALG-ASGIFIG 305 (366)
Q Consensus 277 i~vi~~GGI~~~~dv~kalalG-Ad~V~ig 305 (366)
+||++++.+.+..++.+++..| +|.|++-
T Consensus 237 iPIa~dE~~~~~~~~~~~i~~~~~d~v~ik 266 (382)
T 2gdq_A 237 VPVAGGENMKGPAQYVPLLSQRCLDIIQPD 266 (382)
T ss_dssp SCEEECTTCCSHHHHHHHHHTTCCSEECCC
T ss_pred CCEEecCCcCCHHHHHHHHHcCCCCEEecC
Confidence 9999999999999999999987 8999884
|
| >3stp_A Galactonate dehydratase, putative; PSI biology, structural genomics, NEW YORK structural genomi research consortium; 1.88A {Labrenzia aggregata iam 12614} PDB: 3sqs_A 3ssz_A | Back alignment and structure |
|---|
Probab=95.01 E-value=0.19 Score=49.37 Aligned_cols=124 Identities=9% Similarity=0.026 Sum_probs=89.4
Q ss_pred CCHHHHHHHHHHHHHcCCCEEEEecCCCCCcchhHHHhhhcCCCCccccccccccccCCCccccchhhHHHhhhccCCCC
Q 017781 133 KDRNVVAQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLTLKNFQGLDLGKMDEANDSGLAAYVAGQIDRSL 212 (366)
Q Consensus 133 ~d~~~~~~~l~ra~~~G~~ai~vtvd~p~~g~r~~d~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~ 212 (366)
.+++.+.+.++++.+.|++++-+.+++... + + . .+...
T Consensus 178 ~~~e~~~~~a~~~~~~Gf~~iKik~g~gp~-----d------------------------------g-~------~~~~~ 215 (412)
T 3stp_A 178 GSIEAMQKEAEEAMKGGYKAFKSRFGYGPK-----D------------------------------G-M------PGMRE 215 (412)
T ss_dssp CCHHHHHHHHHHHHTTTCSEEEEECCCCGG-----G------------------------------H-H------HHHHH
T ss_pred CCHHHHHHHHHHHHHcCCCEEEEecccCcc-----c------------------------------c-c------chHHH
Confidence 577888888888888999999887654210 0 0 0 01123
Q ss_pred CHHHHHHHHHhc--CCCEEEEec--cCHHH--------HHcCCcEEEEcCCCccCCCCCcchHHHHHHHHHHcCCCceEE
Q 017781 213 SWKDVKWLQTIT--KLPILVKGV--LTAED--------VQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVF 280 (366)
Q Consensus 213 ~~~~i~~lr~~~--~~pv~vK~v--~~~~d--------~~aGad~I~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~i~vi 280 (366)
+.+.++.+|+.+ +.+|.+..- .+.++ .+.|+++|-- ...+..++.+.++++.+ .+||+
T Consensus 216 die~v~avReavG~d~~L~vDaN~~~~~~~Ai~~~~~Le~~~i~~iEe--------P~~~~d~~~~~~l~~~~--~iPIa 285 (412)
T 3stp_A 216 NLKRVEAVREVIGYDNDLMLECYMGWNLDYAKRMLPKLAPYEPRWLEE--------PVIADDVAGYAELNAMN--IVPIS 285 (412)
T ss_dssp HHHHHHHHHHHHCSSSEEEEECTTCSCHHHHHHHHHHHGGGCCSEEEC--------CSCTTCHHHHHHHHHTC--SSCEE
T ss_pred HHHHHHHHHHHcCCCCeEEEECCCCCCHHHHHHHHHHHHhcCCCEEEC--------CCCcccHHHHHHHHhCC--CCCEE
Confidence 556788899887 578888843 45554 6678888841 11233677888888876 79999
Q ss_pred EecCCCCHHHHHHHHHhC-cCEEEecHHH
Q 017781 281 LDGGVRRGTDVFKALALG-ASGIFIGRPV 308 (366)
Q Consensus 281 ~~GGI~~~~dv~kalalG-Ad~V~igr~~ 308 (366)
+++-+.+..|+.+++..| +|.|++--..
T Consensus 286 ~dE~~~~~~~~~~li~~~a~D~v~ik~~~ 314 (412)
T 3stp_A 286 GGEHEFSVIGCAELINRKAVSVLQYDTNR 314 (412)
T ss_dssp ECTTCCSHHHHHHHHHTTCCSEECCCHHH
T ss_pred eCCCCCCHHHHHHHHHcCCCCEEecChhh
Confidence 999999999999999987 8999987544
|
| >3l21_A DHDPS, dihydrodipicolinate synthase; DAPA, dimer, RV2753C, lysine biosynthesis, amino-acid biosynthesis, diaminopimelate biosynthesis; HET: KPI CME; 2.10A {Mycobacterium tuberculosis} SCOP: c.1.10.1 PDB: 1xxx_A | Back alignment and structure |
|---|
Probab=95.00 E-value=0.056 Score=50.94 Aligned_cols=101 Identities=21% Similarity=0.284 Sum_probs=65.0
Q ss_pred CCCCHHHHHHHHHhcCCCEEEEeccCHHHHHcCCcEEEEcCCCccCCCCCcc-hHHHHHHHHHHcCCCceEEEecCCCCH
Q 017781 210 RSLSWKDVKWLQTITKLPILVKGVLTAEDVQAGAAGIIVSNHGARQLDYVPA-TIMALEEVVKATQGRIPVFLDGGVRRG 288 (366)
Q Consensus 210 ~~~~~~~i~~lr~~~~~pv~vK~v~~~~d~~aGad~I~vs~~gg~~~~~~~~-~~~~l~~i~~~~~~~i~vi~~GGI~~~ 288 (366)
...+++.++++.+.. .+.|+|+|++.++.|....-... ..+++..+++.+.+++|||+.-|=.+-
T Consensus 31 g~iD~~~l~~lv~~l--------------i~~Gv~gi~v~GttGE~~~Lt~~Er~~v~~~~~~~~~grvpviaGvg~~~t 96 (304)
T 3l21_A 31 GSLDTATAARLANHL--------------VDQGCDGLVVSGTTGESPTTTDGEKIELLRAVLEAVGDRARVIAGAGTYDT 96 (304)
T ss_dssp SCBCHHHHHHHHHHH--------------HHTTCSEEEESSTTTTGGGSCHHHHHHHHHHHHHHHTTTSEEEEECCCSCH
T ss_pred CCcCHHHHHHHHHHH--------------HHcCCCEEEeCccccchhhCCHHHHHHHHHHHHHHhCCCCeEEEeCCCCCH
Confidence 456676666555432 56799999998876643211211 234566666777778999986665666
Q ss_pred HHHHH----HHHhCcCEEEecHHHHHHhhhcCHHHHHHHHHHH
Q 017781 289 TDVFK----ALALGASGIFIGRPVVYSLAAEGEKGVRRVLEML 327 (366)
Q Consensus 289 ~dv~k----alalGAd~V~igr~~l~~l~~~G~~gv~~~~~~l 327 (366)
.++++ |-.+|||+|++-.|+++.. .++++.++++.+
T Consensus 97 ~~ai~la~~a~~~Gadavlv~~P~y~~~---s~~~l~~~f~~v 136 (304)
T 3l21_A 97 AHSIRLAKACAAEGAHGLLVVTPYYSKP---PQRGLQAHFTAV 136 (304)
T ss_dssp HHHHHHHHHHHHHTCSEEEEECCCSSCC---CHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCCEEEECCCCCCCC---CHHHHHHHHHHH
Confidence 66653 3347999999999987642 455555544443
|
| >1vc4_A Indole-3-glycerol phosphate synthase; lyase, tryptophan biosynthesis, riken structural genomics/PR initiative, RSGI, structural genomics; 1.80A {Thermus thermophilus} SCOP: c.1.2.4 | Back alignment and structure |
|---|
Probab=94.98 E-value=0.094 Score=48.07 Aligned_cols=65 Identities=20% Similarity=0.232 Sum_probs=51.8
Q ss_pred HHcCCcEEEEcCCCccCCCCCcchHHHHHHHHHHcCCCceEEEecCCCCHHHHHHHHHhCcCEEEecHHHH
Q 017781 239 VQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFIGRPVV 309 (366)
Q Consensus 239 ~~aGad~I~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~i~vi~~GGI~~~~dv~kalalGAd~V~igr~~l 309 (366)
.++||++|.|-.-.+ .-....+.|..+++.+ ++||+.-++|.+..++..++++|||+|.++...+
T Consensus 75 ~~~GA~~isvlt~~~----~f~G~~~~l~~i~~~v--~lPvl~kdfI~d~~qi~~a~~~GAD~VlL~~~~l 139 (254)
T 1vc4_A 75 ARGGARAVSVLTEPH----RFGGSLLDLKRVREAV--DLPLLRKDFVVDPFMLEEARAFGASAALLIVALL 139 (254)
T ss_dssp HHTTCSEEEEECCCS----SSCCCHHHHHHHHHHC--CSCEEEESCCCSHHHHHHHHHTTCSEEEEEHHHH
T ss_pred HHcCCCEEEEecchh----hhccCHHHHHHHHHhc--CCCEEECCcCCCHHHHHHHHHcCCCEEEECccch
Confidence 788999998743211 0112556777788887 8999999999999999999999999999998765
|
| >3na8_A Putative dihydrodipicolinate synthetase; lyase; HET: MSE; 1.85A {Pseudomonas aeruginosa} | Back alignment and structure |
|---|
Probab=94.97 E-value=0.046 Score=51.80 Aligned_cols=103 Identities=14% Similarity=0.113 Sum_probs=65.6
Q ss_pred CCCCCHHHHHHHHHhcCCCEEEEeccCHHHHHcCCcEEEEcCCCccCCCCCcc-hHHHHHHHHHHcCCCceEEEecCCCC
Q 017781 209 DRSLSWKDVKWLQTITKLPILVKGVLTAEDVQAGAAGIIVSNHGARQLDYVPA-TIMALEEVVKATQGRIPVFLDGGVRR 287 (366)
Q Consensus 209 d~~~~~~~i~~lr~~~~~pv~vK~v~~~~d~~aGad~I~vs~~gg~~~~~~~~-~~~~l~~i~~~~~~~i~vi~~GGI~~ 287 (366)
|...+++.++++.+.. .+.|+|+|++.++.|....-... ..+++..+++.+.+++|||+--|=.+
T Consensus 39 dg~iD~~~l~~lv~~l--------------i~~Gv~Gi~v~GtTGE~~~Ls~~Er~~v~~~~v~~~~grvpViaGvg~~~ 104 (315)
T 3na8_A 39 DGGLDLPALGRSIERL--------------IDGGVHAIAPLGSTGEGAYLSDPEWDEVVDFTLKTVAHRVPTIVSVSDLT 104 (315)
T ss_dssp TSSBCHHHHHHHHHHH--------------HHTTCSEEECSSGGGTGGGSCHHHHHHHHHHHHHHHTTSSCBEEECCCSS
T ss_pred CCCcCHHHHHHHHHHH--------------HHcCCCEEEECccccChhhCCHHHHHHHHHHHHHHhCCCCcEEEecCCCC
Confidence 3456666666555432 56899999998876632211111 23456666666777899988666556
Q ss_pred HHHHHH----HHHhCcCEEEecHHHHHHhhhcCHHHHHHHHHHHH
Q 017781 288 GTDVFK----ALALGASGIFIGRPVVYSLAAEGEKGVRRVLEMLR 328 (366)
Q Consensus 288 ~~dv~k----alalGAd~V~igr~~l~~l~~~G~~gv~~~~~~l~ 328 (366)
-.++++ |-.+|||++++-.|+++.. .++++.++++.+.
T Consensus 105 t~~ai~la~~A~~~Gadavlv~~P~y~~~---s~~~l~~~f~~va 146 (315)
T 3na8_A 105 TAKTVRRAQFAESLGAEAVMVLPISYWKL---NEAEVFQHYRAVG 146 (315)
T ss_dssp HHHHHHHHHHHHHTTCSEEEECCCCSSCC---CHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCCCEEEECCCCCCCC---CHHHHHHHHHHHH
Confidence 666553 4458999999999987642 4556555554443
|
| >4dwd_A Mandelate racemase/muconate lactonizing enzyme, C domain protein; structural genomics, EFI, enzyme function initiative, metal protein; HET: MSE; 1.50A {Paracoccus denitrificans} PDB: 3n4e_A* | Back alignment and structure |
|---|
Probab=94.95 E-value=0.21 Score=48.62 Aligned_cols=122 Identities=14% Similarity=0.057 Sum_probs=87.3
Q ss_pred CCHHHHHHHH-HHHHHcCCCEEEEecCCCCCcchhHHHhhhcCCCCccccccccccccCCCccccchhhHHHhhhccCCC
Q 017781 133 KDRNVVAQLV-RRAERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLTLKNFQGLDLGKMDEANDSGLAAYVAGQIDRS 211 (366)
Q Consensus 133 ~d~~~~~~~l-~ra~~~G~~ai~vtvd~p~~g~r~~d~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~ 211 (366)
.+++.+.+.+ +++.+.|++++=+.++.+... . ..++.
T Consensus 138 ~~~e~~~~~a~~~~~~~G~~~~KlKvG~~~~~----------------~--------------------------~~~~~ 175 (393)
T 4dwd_A 138 RSVDEVVREVARRVEAEQPAAVKIRWDGDRTR----------------C--------------------------DVDIP 175 (393)
T ss_dssp SCHHHHHHHHHHHHHHHCCSEEEEECCCCTTC----------------C--------------------------SCCHH
T ss_pred CCHHHHHHHHHHHHHHcCCCEEEEccCCCCcc----------------c--------------------------ccCHH
Confidence 4567777777 777778999998877643110 0 00122
Q ss_pred CCHHHHHHHHHhc--CCCEEEEec--cCHHH--------HHcCCcEEEEcCCCccCCCCCcchHHHHHHHHHHcCCCceE
Q 017781 212 LSWKDVKWLQTIT--KLPILVKGV--LTAED--------VQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPV 279 (366)
Q Consensus 212 ~~~~~i~~lr~~~--~~pv~vK~v--~~~~d--------~~aGad~I~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~i~v 279 (366)
.+.+.++.+|+.+ +.+|.+..- .+.++ .+.|+++|- + ...+..++.+.++++.. .+||
T Consensus 176 ~d~~~v~avR~a~g~~~~l~vDaN~~~~~~~A~~~~~~L~~~~i~~iE-------q-P~~~~d~~~~~~l~~~~--~iPI 245 (393)
T 4dwd_A 176 GDIAKARAVRELLGPDAVIGFDANNGYSVGGAIRVGRALEDLGYSWFE-------E-PVQHYHVGAMGEVAQRL--DITV 245 (393)
T ss_dssp HHHHHHHHHHHHHCTTCCEEEECTTCCCHHHHHHHHHHHHHTTCSEEE-------C-CSCTTCHHHHHHHHHHC--SSEE
T ss_pred HHHHHHHHHHHHhCCCCeEEEECCCCCCHHHHHHHHHHHHhhCCCEEE-------C-CCCcccHHHHHHHHhhC--CCCE
Confidence 3456788899886 578888843 45554 677888885 1 11223577888888877 7999
Q ss_pred EEecCCCCHHHHHHHHHhCcCEEEecH
Q 017781 280 FLDGGVRRGTDVFKALALGASGIFIGR 306 (366)
Q Consensus 280 i~~GGI~~~~dv~kalalGAd~V~igr 306 (366)
+++.-+.+..|+.+++..|+|.|++--
T Consensus 246 a~dE~~~~~~~~~~~i~~~~d~v~~k~ 272 (393)
T 4dwd_A 246 SAGEQTYTLQALKDLILSGVRMVQPDI 272 (393)
T ss_dssp EBCTTCCSHHHHHHHHHHTCCEECCCT
T ss_pred EecCCcCCHHHHHHHHHcCCCEEEeCc
Confidence 999999999999999998999999853
|
| >3qze_A DHDPS, dihydrodipicolinate synthase; alpha beta barrel, cytoplasmic; 1.59A {Pseudomonas aeruginosa} PDB: 3puo_A* 3noe_A 3ps7_A* 3s8h_A | Back alignment and structure |
|---|
Probab=94.94 E-value=0.057 Score=51.12 Aligned_cols=102 Identities=20% Similarity=0.328 Sum_probs=65.6
Q ss_pred CCCCHHHHHHHHHhcCCCEEEEeccCHHHHHcCCcEEEEcCCCccCCCCCcc-hHHHHHHHHHHcCCCceEEEecCCCCH
Q 017781 210 RSLSWKDVKWLQTITKLPILVKGVLTAEDVQAGAAGIIVSNHGARQLDYVPA-TIMALEEVVKATQGRIPVFLDGGVRRG 288 (366)
Q Consensus 210 ~~~~~~~i~~lr~~~~~pv~vK~v~~~~d~~aGad~I~vs~~gg~~~~~~~~-~~~~l~~i~~~~~~~i~vi~~GGI~~~ 288 (366)
...+++.++++.+.. .+.|+|+|++.+..|....-... ..+++..+++.+.+++|||+--|=.+-
T Consensus 39 g~iD~~~l~~lv~~l--------------i~~Gv~Gl~v~GtTGE~~~Ls~~Er~~v~~~~v~~~~grvpViaGvg~~st 104 (314)
T 3qze_A 39 GRLDWDSLAKLVDFH--------------LQEGTNAIVAVGTTGESATLDVEEHIQVIRRVVDQVKGRIPVIAGTGANST 104 (314)
T ss_dssp SCBCHHHHHHHHHHH--------------HHHTCCEEEESSGGGTGGGCCHHHHHHHHHHHHHHHTTSSCEEEECCCSSH
T ss_pred CCcCHHHHHHHHHHH--------------HHcCCCEEEECccccChhhCCHHHHHHHHHHHHHHhCCCCcEEEeCCCcCH
Confidence 456666666555432 56899999998876642211221 234556666677778999986666566
Q ss_pred HHHHH----HHHhCcCEEEecHHHHHHhhhcCHHHHHHHHHHHH
Q 017781 289 TDVFK----ALALGASGIFIGRPVVYSLAAEGEKGVRRVLEMLR 328 (366)
Q Consensus 289 ~dv~k----alalGAd~V~igr~~l~~l~~~G~~gv~~~~~~l~ 328 (366)
.++++ |-.+|||++++-.|+++.. .++++.++++.+.
T Consensus 105 ~eai~la~~A~~~Gadavlv~~P~y~~~---s~~~l~~~f~~va 145 (314)
T 3qze_A 105 REAVALTEAAKSGGADACLLVTPYYNKP---TQEGMYQHFRHIA 145 (314)
T ss_dssp HHHHHHHHHHHHTTCSEEEEECCCSSCC---CHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCCEEEEcCCCCCCC---CHHHHHHHHHHHH
Confidence 66654 3358999999999987642 4566555555443
|
| >1wx0_A Transaldolase; structural genomics, riken structural genomics/proteomics initiative, RSGI, transferas; 2.27A {Thermus thermophilus HB8} SCOP: c.1.10.1 | Back alignment and structure |
|---|
Probab=94.94 E-value=0.44 Score=42.77 Aligned_cols=100 Identities=19% Similarity=0.150 Sum_probs=69.9
Q ss_pred CHHHHHHHHHhc--CCCEEEEeccCHHH----HHcCCcEEEEcCCCccCCCCCcchHHHHHHHHHHc---CCCceEEEec
Q 017781 213 SWKDVKWLQTIT--KLPILVKGVLTAED----VQAGAAGIIVSNHGARQLDYVPATIMALEEVVKAT---QGRIPVFLDG 283 (366)
Q Consensus 213 ~~~~i~~lr~~~--~~pv~vK~v~~~~d----~~aGad~I~vs~~gg~~~~~~~~~~~~l~~i~~~~---~~~i~vi~~G 283 (366)
+|+-++.++... ++++-+=.+.+.+. .++|++.|.. .-||-.+++.+....+.++++.. +.+..|++.
T Consensus 96 T~eGl~A~~~L~~~GI~vN~TliFS~~Qa~~aa~AGa~~iSp--FVgRidd~g~~G~~~v~~i~~~~~~~~~~t~vl~A- 172 (223)
T 1wx0_A 96 TEEGLKACKRLSAEGIKVNMTLIFSANQALLAARAGASYVSP--FLGRVDDISWDGGELLREIVEMIQVQDLPVKVIAA- 172 (223)
T ss_dssp SHHHHHHHHHHHHTTCCEEEEEECSHHHHHHHHHTTCSEEEE--BHHHHHHTTSCHHHHHHHHHHHHHHTTCSCEEEEB-
T ss_pred CHHHHHHHHHHHHCCCcEEEEEeCCHHHHHHHHHCCCeEEEe--ccchHhhcCCCHHHHHHHHHHHHHHcCCCeEEeec-
Confidence 565444444332 89999999999987 8999997653 33444444545556666655543 224556665
Q ss_pred CCCCHHHHHHHHHhCcCEEEecHHHHHHhhhc
Q 017781 284 GVRRGTDVFKALALGASGIFIGRPVVYSLAAE 315 (366)
Q Consensus 284 GI~~~~dv~kalalGAd~V~igr~~l~~l~~~ 315 (366)
++|++.++.++..+|+|.+-+.-.++..+...
T Consensus 173 S~r~~~~v~~~~l~G~d~~Tip~~~l~~l~~h 204 (223)
T 1wx0_A 173 SIRHPRHVTEAALLGADIATMPHAVFKQLLKH 204 (223)
T ss_dssp CCCSHHHHHHHHHTTCSEEEECHHHHHHHTCC
T ss_pred ccCCHHHHHHHHHhCCCEEECCHHHHHHHHcC
Confidence 69999999999999999999998888876543
|
| >3m47_A Orotidine 5'-phosphate decarboxylase; orotidine 5'-monophosphate decarboxylase, mutant I218A, LYAS; 1.20A {Methanothermobacter thermautotrophicusdelta H} SCOP: c.1.2.3 PDB: 3li1_A 3m5z_A 3lty_A 3ltp_A* 3g18_A* 3g1d_A* 3g1f_A* 3g1h_A* 3g1a_A* 3lv6_A* 1klz_A* 3g1y_A 3g22_A* 3g24_A* 3p5z_A* 3siz_A* 3sy5_A* 1loq_A* 1lor_A* 1kly_A* ... | Back alignment and structure |
|---|
Probab=94.94 E-value=0.027 Score=50.90 Aligned_cols=60 Identities=17% Similarity=0.156 Sum_probs=39.0
Q ss_pred HHcCCcEEEEcCCCccCCCCCcchHHHHHHHHHHcCCCceEEEecCCCCH-HHHHHHHHhCcCEEEecHHHHH
Q 017781 239 VQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRG-TDVFKALALGASGIFIGRPVVY 310 (366)
Q Consensus 239 ~~aGad~I~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~i~vi~~GGI~~~-~dv~kalalGAd~V~igr~~l~ 310 (366)
.++|+|+++++.+ ..+.+.++++.++.+.++ +++||+-. .+. +++..|||.+.+||+++.
T Consensus 147 ~~~G~~GvV~~at----------~~~e~~~ir~~~~~~~~i-v~PGI~~~g~~p-~~~~aGad~iVvGr~I~~ 207 (228)
T 3m47_A 147 VDLGVKNYVGPST----------RPERLSRLREIIGQDSFL-ISPGVGAQGGDP-GETLRFADAIIVGRSIYL 207 (228)
T ss_dssp HHTTCCEEECCSS----------CHHHHHHHHHHHCSSSEE-EECC----------CGGGTCSEEEECHHHHT
T ss_pred HHhCCcEEEECCC----------ChHHHHHHHHhcCCCCEE-EecCcCcCCCCH-hHHHcCCCEEEECHHHhC
Confidence 6789999987542 234566777777545655 78888753 367 889999999999999753
|
| >1tzz_A Hypothetical protein L1841; structural genomics, mandelate racemase like fold, nysgxrc target T1523, PSI, protein structure initiative; 1.86A {Bradyrhizobium japonicum} SCOP: c.1.11.2 d.54.1.1 PDB: 2dw7_A* 2dw6_A* | Back alignment and structure |
|---|
Probab=94.93 E-value=0.12 Score=50.19 Aligned_cols=114 Identities=8% Similarity=0.007 Sum_probs=79.2
Q ss_pred CHHHHHHHHHHHHHcCCCEEEEecCCCCCcchhHHHhhhcCCCCccccccccccccCCCccccchhhHHHhhhccCCCCC
Q 017781 134 DRNVVAQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLTLKNFQGLDLGKMDEANDSGLAAYVAGQIDRSLS 213 (366)
Q Consensus 134 d~~~~~~~l~ra~~~G~~ai~vtvd~p~~g~r~~d~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~ 213 (366)
+.+.+.+.++++.+.|++++-+.+..+. ....
T Consensus 165 ~~~~~~~~a~~~~~~Gf~~iKik~g~~~------------------------------------------------~~~~ 196 (392)
T 1tzz_A 165 GLSMLRGEMRGYLDRGYNVVKMKIGGAP------------------------------------------------IEED 196 (392)
T ss_dssp CHHHHHHHHHHHHTTTCSEEEEECSSSC------------------------------------------------HHHH
T ss_pred CHHHHHHHHHHHHHcCCCEEEEcCCCCC------------------------------------------------HHHH
Confidence 6677777778888899999887654310 1123
Q ss_pred HHHHHHHHHhc--CCCEEEEec--cCHHH--------HHcCCcEEEEcCCCccCCCCCcchHHHHHHHHHHcCCCceEEE
Q 017781 214 WKDVKWLQTIT--KLPILVKGV--LTAED--------VQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFL 281 (366)
Q Consensus 214 ~~~i~~lr~~~--~~pv~vK~v--~~~~d--------~~aGad~I~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~i~vi~ 281 (366)
.+.++.+|+.+ +.+|.+..- .+.++ .+.|+++|- +. ..+..++.+.++++.+ ++||++
T Consensus 197 ~e~v~avr~a~g~~~~l~vDan~~~~~~~a~~~~~~l~~~~i~~iE-------qP-~~~~d~~~~~~l~~~~--~iPIa~ 266 (392)
T 1tzz_A 197 RMRIEAVLEEIGKDAQLAVDANGRFNLETGIAYAKMLRDYPLFWYE-------EV-GDPLDYALQAALAEFY--PGPMAT 266 (392)
T ss_dssp HHHHHHHHHHHTTTCEEEEECTTCCCHHHHHHHHHHHTTSCCSEEE-------CC-SCTTCHHHHHHHTTTC--CSCEEE
T ss_pred HHHHHHHHHhcCCCCeEEEECCCCCCHHHHHHHHHHHHHcCCCeec-------CC-CChhhHHHHHHHHhhC--CCCEEE
Confidence 45667777765 466666632 34444 456777763 11 1233677777887766 799999
Q ss_pred ecCCCCHHHHHHHHHhC-----cCEEEec
Q 017781 282 DGGVRRGTDVFKALALG-----ASGIFIG 305 (366)
Q Consensus 282 ~GGI~~~~dv~kalalG-----Ad~V~ig 305 (366)
++.+.+..|+.+++..| +|.|++-
T Consensus 267 dE~~~~~~~~~~~i~~~~~~~~~d~v~ik 295 (392)
T 1tzz_A 267 GENLFSHQDARNLLRYGGMRPDRDWLQFD 295 (392)
T ss_dssp CTTCCSHHHHHHHHHHSCCCTTTCEECCC
T ss_pred CCCCCCHHHHHHHHHcCCCccCCcEEEEC
Confidence 99999999999999998 8999985
|
| >2rfg_A Dihydrodipicolinate synthase; beta barrel, amino-acid biosynthesis, diaminopimelate biosyn lyase, lysine biosynthesis, schiff base; 1.50A {Hahella chejuensis} | Back alignment and structure |
|---|
Probab=94.89 E-value=0.06 Score=50.53 Aligned_cols=88 Identities=17% Similarity=0.311 Sum_probs=56.4
Q ss_pred HHcCCcEEEEcCCCccCCCCCcc-hHHHHHHHHHHcCCCceEEEecCCCCHHHHHH----HHHhCcCEEEecHHHHHHhh
Q 017781 239 VQAGAAGIIVSNHGARQLDYVPA-TIMALEEVVKATQGRIPVFLDGGVRRGTDVFK----ALALGASGIFIGRPVVYSLA 313 (366)
Q Consensus 239 ~~aGad~I~vs~~gg~~~~~~~~-~~~~l~~i~~~~~~~i~vi~~GGI~~~~dv~k----alalGAd~V~igr~~l~~l~ 313 (366)
.+.|+|+|++.++.|....-... ..+++..+++.+.+++|||+--|=.+-.++++ |-.+|||++++-.|+++..
T Consensus 31 i~~Gv~gi~v~GttGE~~~Ls~~Er~~v~~~~~~~~~grvpviaGvg~~~t~~ai~la~~A~~~Gadavlv~~P~y~~~- 109 (297)
T 2rfg_A 31 IKHGAHGLVPVGTTGESPTLTEEEHKRVVALVAEQAQGRVPVIAGAGSNNPVEAVRYAQHAQQAGADAVLCVAGYYNRP- 109 (297)
T ss_dssp HHTTCSEEECSSGGGTGGGSCHHHHHHHHHHHHHHHTTSSCBEEECCCSSHHHHHHHHHHHHHHTCSEEEECCCTTTCC-
T ss_pred HHcCCCEEEECccccchhhCCHHHHHHHHHHHHHHhCCCCeEEEccCCCCHHHHHHHHHHHHhcCCCEEEEcCCCCCCC-
Confidence 56799999998876633211221 23455666666777899887555545555543 3347999999999987642
Q ss_pred hcCHHHHHHHHHHHHH
Q 017781 314 AEGEKGVRRVLEMLRE 329 (366)
Q Consensus 314 ~~G~~gv~~~~~~l~~ 329 (366)
.++++.++++.+.+
T Consensus 110 --s~~~l~~~f~~va~ 123 (297)
T 2rfg_A 110 --SQEGLYQHFKMVHD 123 (297)
T ss_dssp --CHHHHHHHHHHHHH
T ss_pred --CHHHHHHHHHHHHH
Confidence 45666655555443
|
| >3b4u_A Dihydrodipicolinate synthase; structural genomics, PSI-2, MC protein structure initiative, midwest center for structural genomics; 1.20A {Agrobacterium tumefaciens str} | Back alignment and structure |
|---|
Probab=94.88 E-value=0.06 Score=50.40 Aligned_cols=105 Identities=12% Similarity=0.122 Sum_probs=66.5
Q ss_pred CCCCCHHHHHHHHHhcCCCEEEEeccCHHHHHcCCcEEEEcCCCccCCCCCcc-hHHHHHHHHHHcCCCceEEEecCCCC
Q 017781 209 DRSLSWKDVKWLQTITKLPILVKGVLTAEDVQAGAAGIIVSNHGARQLDYVPA-TIMALEEVVKATQGRIPVFLDGGVRR 287 (366)
Q Consensus 209 d~~~~~~~i~~lr~~~~~pv~vK~v~~~~d~~aGad~I~vs~~gg~~~~~~~~-~~~~l~~i~~~~~~~i~vi~~GGI~~ 287 (366)
|...+++.++++.+.. .+.|+|+|++.++.|....-... ..+++..+++.+.+++|||+--|=.+
T Consensus 18 dg~iD~~~l~~lv~~l--------------i~~Gv~gl~~~GttGE~~~Ls~~Er~~v~~~~~~~~~gr~pviaGvg~~~ 83 (294)
T 3b4u_A 18 DGTVDIDAMIAHARRC--------------LSNGCDSVTLFGTTGEGCSVGSRERQAILSSFIAAGIAPSRIVTGVLVDS 83 (294)
T ss_dssp TSSBCHHHHHHHHHHH--------------HHTTCSEEEESSTTTTGGGSCHHHHHHHHHHHHHTTCCGGGEEEEECCSS
T ss_pred CCCcCHHHHHHHHHHH--------------HHcCCCEEEECccccChhhCCHHHHHHHHHHHHHHhCCCCcEEEeCCCcc
Confidence 3456676666555432 56799999998876643211221 23455556666667899887555555
Q ss_pred HHHHHH----HHHhCcCEEEecHHHHHH-hhhcCHHHHHHHHHHHHHH
Q 017781 288 GTDVFK----ALALGASGIFIGRPVVYS-LAAEGEKGVRRVLEMLREE 330 (366)
Q Consensus 288 ~~dv~k----alalGAd~V~igr~~l~~-l~~~G~~gv~~~~~~l~~e 330 (366)
-.++++ |-.+|||++++-.|+++. . .++++.++++.+.+.
T Consensus 84 t~~ai~la~~A~~~Gadavlv~~P~y~~~~---s~~~l~~~f~~va~a 128 (294)
T 3b4u_A 84 IEDAADQSAEALNAGARNILLAPPSYFKNV---SDDGLFAWFSAVFSK 128 (294)
T ss_dssp HHHHHHHHHHHHHTTCSEEEECCCCSSCSC---CHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCCCEEEEcCCcCCCCC---CHHHHHHHHHHHHHh
Confidence 555543 334799999999998764 2 466766666655543
|
| >1i4n_A Indole-3-glycerol phosphate synthase; thermostable TIM-barrel protein, salt bridges, electrostatic interactions, lyase; 2.50A {Thermotoga maritima} SCOP: c.1.2.4 PDB: 1j5t_A | Back alignment and structure |
|---|
Probab=94.81 E-value=0.097 Score=47.98 Aligned_cols=85 Identities=21% Similarity=0.219 Sum_probs=61.3
Q ss_pred CHHHHHHHHHhcCCCEEEEecc--CHHH---HHcCCcEEEEcCCCccCCCCCcchHHHHHHHHHHcCCCceEEEecCCCC
Q 017781 213 SWKDVKWLQTITKLPILVKGVL--TAED---VQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRR 287 (366)
Q Consensus 213 ~~~~i~~lr~~~~~pv~vK~v~--~~~d---~~aGad~I~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~i~vi~~GGI~~ 287 (366)
+.++++.+|+.+++||+-|.-. ..+- ..+|||+|.+...- + ...++..+.+..+.+ .+.++++ +++
T Consensus 89 s~~dL~~ir~~v~lPvLrKDfi~~~~qi~ea~~~GAD~ilLi~a~---l--~~~~l~~l~~~a~~l--Gl~~lvE--v~~ 159 (251)
T 1i4n_A 89 DPAFVRAARNLTCRPILAKDFYIDTVQVKLASSVGADAILIIARI---L--TAEQIKEIYEAAEEL--GMDSLVE--VHS 159 (251)
T ss_dssp CTHHHHHHHTTCCSCEEEECCCCSTHHHHHHHHTTCSEEEEEGGG---S--CHHHHHHHHHHHHTT--TCEEEEE--ECS
T ss_pred CHHHHHHHHHhCCCCEEEeeCCCCHHHHHHHHHcCCCEEEEeccc---C--CHHHHHHHHHHHHHc--CCeEEEE--eCC
Confidence 5678999999999999999642 3322 88999999875431 1 112344444444444 6777776 779
Q ss_pred HHHHHHHHHh-CcCEEEecH
Q 017781 288 GTDVFKALAL-GASGIFIGR 306 (366)
Q Consensus 288 ~~dv~kalal-GAd~V~igr 306 (366)
.+++..|+.+ |++.|++-.
T Consensus 160 ~eE~~~A~~l~g~~iIGinn 179 (251)
T 1i4n_A 160 REDLEKVFSVIRPKIIGINT 179 (251)
T ss_dssp HHHHHHHHTTCCCSEEEEEC
T ss_pred HHHHHHHHhcCCCCEEEEeC
Confidence 9999999999 999998875
|
| >2v9d_A YAGE; dihydrodipicolinic acid synthase, N-acetyl neuraminate lyase, NAL, lyase, DHDPS, prophage; 2.15A {Escherichia coli} PDB: 2v8z_A 3nev_A* 3n2x_A* | Back alignment and structure |
|---|
Probab=94.80 E-value=0.062 Score=51.55 Aligned_cols=101 Identities=19% Similarity=0.280 Sum_probs=63.5
Q ss_pred CCCCHHHHHHHHHhcCCCEEEEeccCHHHHHcCCcEEEEcCCCccCCCCCcc-hHHHHHHHHHHcCCCceEEEecCCCCH
Q 017781 210 RSLSWKDVKWLQTITKLPILVKGVLTAEDVQAGAAGIIVSNHGARQLDYVPA-TIMALEEVVKATQGRIPVFLDGGVRRG 288 (366)
Q Consensus 210 ~~~~~~~i~~lr~~~~~pv~vK~v~~~~d~~aGad~I~vs~~gg~~~~~~~~-~~~~l~~i~~~~~~~i~vi~~GGI~~~ 288 (366)
...+++.++++.+.. .+.|+|+|++.++.|....-... ..+++..+++.+.+++|||+--|=.+-
T Consensus 47 g~ID~~~l~~lv~~l--------------i~~Gv~Gl~v~GtTGE~~~Ls~eEr~~vi~~~ve~~~grvpViaGvg~~st 112 (343)
T 2v9d_A 47 GQLDKPGTAALIDDL--------------IKAGVDGLFFLGSGGEFSQLGAEERKAIARFAIDHVDRRVPVLIGTGGTNA 112 (343)
T ss_dssp SSBCHHHHHHHHHHH--------------HHTTCSCEEESSTTTTGGGSCHHHHHHHHHHHHHHHTTSSCEEEECCSSCH
T ss_pred CCcCHHHHHHHHHHH--------------HHcCCCEEEeCccccChhhCCHHHHHHHHHHHHHHhCCCCcEEEecCCCCH
Confidence 455666665555432 56799999998876642211211 234566666677778999876665555
Q ss_pred HHHHH----HHHhCcCEEEecHHHHHHhhhcCHHHHHHHHHHH
Q 017781 289 TDVFK----ALALGASGIFIGRPVVYSLAAEGEKGVRRVLEML 327 (366)
Q Consensus 289 ~dv~k----alalGAd~V~igr~~l~~l~~~G~~gv~~~~~~l 327 (366)
.++++ |-.+|||+|++-.|+++.. .++++.++++.+
T Consensus 113 ~eai~la~~A~~~Gadavlv~~P~Y~~~---s~~~l~~~f~~V 152 (343)
T 2v9d_A 113 RETIELSQHAQQAGADGIVVINPYYWKV---SEANLIRYFEQV 152 (343)
T ss_dssp HHHHHHHHHHHHHTCSEEEEECCSSSCC---CHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCCCEEEECCCCCCCC---CHHHHHHHHHHH
Confidence 55553 3448999999999987642 455555554443
|
| >3rcy_A Mandelate racemase/muconate lactonizing enzyme-LI protein; structural genomics, protein structure initiative; HET: RIB; 1.99A {Roseovarius SP} PDB: 3t4w_A | Back alignment and structure |
|---|
Probab=94.80 E-value=0.19 Score=49.66 Aligned_cols=129 Identities=18% Similarity=0.178 Sum_probs=89.7
Q ss_pred CCHHHHHHHHHHHHHcCCCEEEEecCCCCCcchhHHHhhhcCCCCccccccccccccCCCccccchhhHHHhhhccCCCC
Q 017781 133 KDRNVVAQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLTLKNFQGLDLGKMDEANDSGLAAYVAGQIDRSL 212 (366)
Q Consensus 133 ~d~~~~~~~l~ra~~~G~~ai~vtvd~p~~g~r~~d~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~ 212 (366)
.+++.+.+.++++.+.|++++=+.+.+|... ..+.. | .. .+...
T Consensus 145 ~~~e~~~~~a~~~~~~Gf~~iKlk~g~~~~~------~~G~~-~----------------------~~-------~~~~~ 188 (433)
T 3rcy_A 145 TSADMAAESAADCVARGYTAVKFDPAGPYTL------RGGHM-P----------------------AM-------TDISL 188 (433)
T ss_dssp TCHHHHHHHHHHHHHTTCSEEEECCSCCCBT------TCCBC-C----------------------CH-------HHHHH
T ss_pred CCHHHHHHHHHHHHHcCCCEEEEcCCCCccc------ccCCC-c----------------------ch-------hhHHH
Confidence 4677888888888889999998877665310 00000 0 00 01123
Q ss_pred CHHHHHHHHHhc--CCCEEEEec--cCHHH--------HHcCCcEEEEcCCCccCCCCCcchHHHHHHHHHHcCCCceEE
Q 017781 213 SWKDVKWLQTIT--KLPILVKGV--LTAED--------VQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVF 280 (366)
Q Consensus 213 ~~~~i~~lr~~~--~~pv~vK~v--~~~~d--------~~aGad~I~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~i~vi 280 (366)
+.+.++.+|+.+ +.+|.+..- .+.++ .+.|+++|-- ...+..++.+.++++.+ .+||+
T Consensus 189 d~e~v~avR~avG~d~~L~vDan~~~t~~~A~~~~~~Le~~~i~~iEe--------P~~~~~~~~~~~l~~~~--~iPIa 258 (433)
T 3rcy_A 189 SVEFCRKIRAAVGDKADLLFGTHGQFTTAGAIRLGQAIEPYSPLWYEE--------PVPPDNVGAMAQVARAV--RIPVA 258 (433)
T ss_dssp HHHHHHHHHHHHTTSSEEEECCCSCBCHHHHHHHHHHHGGGCCSEEEC--------CSCTTCHHHHHHHHHHS--SSCEE
T ss_pred HHHHHHHHHHHhCCCCeEEEeCCCCCCHHHHHHHHHHhhhcCCCEEEC--------CCChhhHHHHHHHHhcc--CCCEE
Confidence 456788999887 578888732 45554 5678888741 11223678888888887 79999
Q ss_pred EecCCCCHHHHHHHHHhC-cCEEEecHH
Q 017781 281 LDGGVRRGTDVFKALALG-ASGIFIGRP 307 (366)
Q Consensus 281 ~~GGI~~~~dv~kalalG-Ad~V~igr~ 307 (366)
+++.+.+..|+.+++..| +|.|++--.
T Consensus 259 ~dE~~~~~~~~~~~l~~g~~D~v~~d~~ 286 (433)
T 3rcy_A 259 TGERLTTKAEFAPVLREGAAAILQPALG 286 (433)
T ss_dssp ECTTCCSHHHHHHHHHTTCCSEECCCHH
T ss_pred ecCCCCCHHHHHHHHHcCCCCEEEeCch
Confidence 999999999999999987 899998743
|
| >1xm3_A Thiazole biosynthesis protein THIG; structural genomics, protein structure initiative, PSI, NESG, northeast structural genomics consortium; 1.80A {Bacillus subtilis} SCOP: c.1.31.1 PDB: 1tyg_A | Back alignment and structure |
|---|
Probab=94.79 E-value=0.071 Score=49.11 Aligned_cols=38 Identities=18% Similarity=0.499 Sum_probs=32.3
Q ss_pred CHHHHHHHHHhcCCCEEEEe-ccCHHH----HHcCCcEEEEcC
Q 017781 213 SWKDVKWLQTITKLPILVKG-VLTAED----VQAGAAGIIVSN 250 (366)
Q Consensus 213 ~~~~i~~lr~~~~~pv~vK~-v~~~~d----~~aGad~I~vs~ 250 (366)
+++.++++++..++||++.+ +.++++ .++|||+|+|..
T Consensus 166 ~~~~l~~i~~~~~iPviv~gGI~t~eda~~~~~~GAdgViVGS 208 (264)
T 1xm3_A 166 NPLNLSFIIEQAKVPVIVDAGIGSPKDAAYAMELGADGVLLNT 208 (264)
T ss_dssp CHHHHHHHHHHCSSCBEEESCCCSHHHHHHHHHTTCSEEEESH
T ss_pred CHHHHHHHHhcCCCCEEEEeCCCCHHHHHHHHHcCCCEEEEcH
Confidence 47789999998899999995 567887 899999999865
|
| >1o5k_A DHDPS, dihydrodipicolinate synthase; TM1521, structural genomics, J protein structure initiative, joint center for structural G lyase; HET: MCL; 1.80A {Thermotoga maritima} SCOP: c.1.10.1 PDB: 3pb2_A 3pb0_A | Back alignment and structure |
|---|
Probab=94.75 E-value=0.06 Score=50.75 Aligned_cols=86 Identities=19% Similarity=0.345 Sum_probs=55.1
Q ss_pred HHcCCcEEEEcCCCccCCCCCcc-hHHHHHHHHHHcCCCceEEEecCCCCHHHHHH----HHHhCcCEEEecHHHHHHhh
Q 017781 239 VQAGAAGIIVSNHGARQLDYVPA-TIMALEEVVKATQGRIPVFLDGGVRRGTDVFK----ALALGASGIFIGRPVVYSLA 313 (366)
Q Consensus 239 ~~aGad~I~vs~~gg~~~~~~~~-~~~~l~~i~~~~~~~i~vi~~GGI~~~~dv~k----alalGAd~V~igr~~l~~l~ 313 (366)
.+.|+|+|++.++.|....-... ..+++..+++.+.+++|||+--|=.+-.++++ |-.+|||++++-.|+++..
T Consensus 43 i~~Gv~gl~v~GtTGE~~~Ls~eEr~~vi~~~~~~~~grvpViaGvg~~st~~ai~la~~A~~~Gadavlv~~P~y~~~- 121 (306)
T 1o5k_A 43 LENGVNALIVLGTTGESPTVNEDEREKLVSRTLEIVDGKIPVIVGAGTNSTEKTLKLVKQAEKLGANGVLVVTPYYNKP- 121 (306)
T ss_dssp HHTTCCEEEESSGGGTGGGCCHHHHHHHHHHHHHHHTTSSCEEEECCCSCHHHHHHHHHHHHHHTCSEEEEECCCSSCC-
T ss_pred HHcCCCEEEeCccccchhhCCHHHHHHHHHHHHHHhCCCCeEEEcCCCccHHHHHHHHHHHHhcCCCEEEECCCCCCCC-
Confidence 56799999998876643211211 23456666666777899887656555555553 3347999999999987642
Q ss_pred hcCHHHHHHHHHHH
Q 017781 314 AEGEKGVRRVLEML 327 (366)
Q Consensus 314 ~~G~~gv~~~~~~l 327 (366)
.++++.++++.+
T Consensus 122 --s~~~l~~~f~~v 133 (306)
T 1o5k_A 122 --TQEGLYQHYKYI 133 (306)
T ss_dssp --CHHHHHHHHHHH
T ss_pred --CHHHHHHHHHHH
Confidence 455555444443
|
| >1w0m_A TIM, triosephosphate isomerase; glycolysis, gluconeogenesis; 2.5A {Thermoproteus tenax} SCOP: c.1.1.1 | Back alignment and structure |
|---|
Probab=94.74 E-value=0.58 Score=42.05 Aligned_cols=39 Identities=28% Similarity=0.509 Sum_probs=35.3
Q ss_pred cCCCceEEEecCCCCHHHHHHHHHhCcCEEEecHHHHHH
Q 017781 273 TQGRIPVFLDGGVRRGTDVFKALALGASGIFIGRPVVYS 311 (366)
Q Consensus 273 ~~~~i~vi~~GGI~~~~dv~kalalGAd~V~igr~~l~~ 311 (366)
+..+++|+.-|||.++.|+..+...|+|++.||+++|.+
T Consensus 170 ~~~~~~ilyggsV~~~n~~~~~~~~giDG~LVG~a~l~a 208 (226)
T 1w0m_A 170 HFPEVSVITGAGIESGDDVAAALRLGTRGVLLASAAVKA 208 (226)
T ss_dssp HCTTSEEEEESSCCSHHHHHHHHHTTCSEEEECHHHHTC
T ss_pred ccCCCEEEEeCCCCcHHHHHHHHhCCCCEEEECHHHHCC
Confidence 345789999999999999999999999999999999864
|
| >2agk_A 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino) methylideneamino] imidazole-4-carboxamide...; TIM alpha/beta barrel; HET: CIT; 1.30A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=94.73 E-value=0.02 Score=52.83 Aligned_cols=61 Identities=16% Similarity=0.147 Sum_probs=48.6
Q ss_pred HHcCCcEEEEcCCCccCCCCCcchHHHHHHHHHHcCCCceEEEecCCCCHHHHHHHHHhCcCEEEecHHHHH
Q 017781 239 VQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFIGRPVVY 310 (366)
Q Consensus 239 ~~aGad~I~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~i~vi~~GGI~~~~dv~kalalGAd~V~igr~~l~ 310 (366)
.+.|++.+.+-.-.+ ...+.+.++.+.+ .+||.+.|||++- |+.+.+ +||+-|.+|+..+.
T Consensus 48 ~~~Ga~~l~vvDL~~-------~n~~~i~~i~~~~--~~pv~vgGGir~~-~~~~~l-~Ga~~Viigs~a~~ 108 (260)
T 2agk_A 48 KDRDVQGCHVIKLGP-------NNDDAAREALQES--PQFLQVGGGINDT-NCLEWL-KWASKVIVTSWLFT 108 (260)
T ss_dssp HHTTCTTCEEEEESS-------SCHHHHHHHHHHS--TTTSEEESSCCTT-THHHHT-TTCSCEEECGGGBC
T ss_pred HHcCCCEEEEEeCCC-------CCHHHHHHHHhcC--CceEEEeCCCCHH-HHHHHh-cCCCEEEECcHHHh
Confidence 677888887632111 4567788888887 7999999999987 999999 99999999987653
|
| >3m5v_A DHDPS, dihydrodipicolinate synthase; TIM barrel, csgid, amino-acid biosynthesis, diaminopimelate biosynthesis, lyase, lysine biosynthesis; HET: MSE; 1.80A {Campylobacter jejuni} SCOP: c.1.10.0 PDB: 3ler_A* | Back alignment and structure |
|---|
Probab=94.73 E-value=0.077 Score=49.84 Aligned_cols=87 Identities=15% Similarity=0.261 Sum_probs=57.2
Q ss_pred HHcCCcEEEEcCCCccCCCCCcc-hHHHHHHHHHHcCC-CceEEEecCCCCHHHHHH----HHHhCcCEEEecHHHHHHh
Q 017781 239 VQAGAAGIIVSNHGARQLDYVPA-TIMALEEVVKATQG-RIPVFLDGGVRRGTDVFK----ALALGASGIFIGRPVVYSL 312 (366)
Q Consensus 239 ~~aGad~I~vs~~gg~~~~~~~~-~~~~l~~i~~~~~~-~i~vi~~GGI~~~~dv~k----alalGAd~V~igr~~l~~l 312 (366)
.+.|+|+|++.++.|....-... ..+++..+++.+.+ ++|||+--|=.+-.++++ |-.+|||++++-.|+++..
T Consensus 38 i~~Gv~gl~v~GttGE~~~Ls~~Er~~v~~~~~~~~~g~rvpviaGvg~~~t~~ai~la~~a~~~Gadavlv~~P~y~~~ 117 (301)
T 3m5v_A 38 IENGIDAVVPVGTTGESATLTHEEHRTCIEIAVETCKGTKVKVLAGAGSNATHEAVGLAKFAKEHGADGILSVAPYYNKP 117 (301)
T ss_dssp HHTTCCEEECSSTTTTGGGSCHHHHHHHHHHHHHHHTTSSCEEEEECCCSSHHHHHHHHHHHHHTTCSEEEEECCCSSCC
T ss_pred HHcCCCEEEECccccChhhCCHHHHHHHHHHHHHHhCCCCCeEEEeCCCCCHHHHHHHHHHHHHcCCCEEEEcCCCCCCC
Confidence 56899999998876642211211 23456666677777 899998666556666654 3348999999999987642
Q ss_pred hhcCHHHHHHHHHHHH
Q 017781 313 AAEGEKGVRRVLEMLR 328 (366)
Q Consensus 313 ~~~G~~gv~~~~~~l~ 328 (366)
.++++.++++.+.
T Consensus 118 ---s~~~l~~~f~~va 130 (301)
T 3m5v_A 118 ---TQQGLYEHYKAIA 130 (301)
T ss_dssp ---CHHHHHHHHHHHH
T ss_pred ---CHHHHHHHHHHHH
Confidence 3555555544443
|
| >3tj4_A Mandelate racemase; enolase, dehydratase, enzyme function initiative, EFI, lyase; 1.50A {Agrobacterium tumefaciens} PDB: 4h19_A* | Back alignment and structure |
|---|
Probab=94.73 E-value=0.24 Score=47.71 Aligned_cols=114 Identities=11% Similarity=0.077 Sum_probs=77.8
Q ss_pred CHHHHHHHHHHHHHc-CCCEEEEecCCCCCcchhHHHhhhcCCCCccccccccccccCCCccccchhhHHHhhhccCCCC
Q 017781 134 DRNVVAQLVRRAERA-GFKAIALTVDTPRLGRREADIKNRFTLPPFLTLKNFQGLDLGKMDEANDSGLAAYVAGQIDRSL 212 (366)
Q Consensus 134 d~~~~~~~l~ra~~~-G~~ai~vtvd~p~~g~r~~d~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~ 212 (366)
+++.+.+.++++.+. |++++=+.++.+. +..
T Consensus 151 ~~~~~~~~a~~~~~~~G~~~~K~Kvg~~~------------------------------------------------~~~ 182 (372)
T 3tj4_A 151 TLEDLLAGSARAVEEDGFTRLKIKVGHDD------------------------------------------------PNI 182 (372)
T ss_dssp CHHHHHHHHHHHHHTTCCCEEEEECCCSS------------------------------------------------HHH
T ss_pred CHHHHHHHHHHHHHccCCCEEEEcCCCCC------------------------------------------------HHH
Confidence 667677777777777 9999877665321 111
Q ss_pred CHHHHHHHHHhc--CCCEEEEec--cCHHH--------HHcCCcEEEEcCCCccCCCCCcchHHHHHHHHHHcCCCceEE
Q 017781 213 SWKDVKWLQTIT--KLPILVKGV--LTAED--------VQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVF 280 (366)
Q Consensus 213 ~~~~i~~lr~~~--~~pv~vK~v--~~~~d--------~~aGad~I~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~i~vi 280 (366)
+.+.++.+|+.+ +.++.+..- .+.++ .+.|+++|- +. ..+..++.+.++++.+ .+||+
T Consensus 183 d~~~v~avR~~~g~~~~l~vDan~~~~~~~a~~~~~~l~~~~i~~iE-------qP-~~~~d~~~~~~l~~~~--~iPIa 252 (372)
T 3tj4_A 183 DIARLTAVRERVDSAVRIAIDGNGKWDLPTCQRFCAAAKDLDIYWFE-------EP-LWYDDVTSHARLARNT--SIPIA 252 (372)
T ss_dssp HHHHHHHHHHHSCTTCEEEEECTTCCCHHHHHHHHHHTTTSCEEEEE-------SC-SCTTCHHHHHHHHHHC--SSCEE
T ss_pred HHHHHHHHHHHcCCCCcEEeeCCCCCCHHHHHHHHHHHhhcCCCEEE-------CC-CCchhHHHHHHHHhhc--CCCEE
Confidence 345677777776 456666632 34443 345555553 11 1223577888888877 79999
Q ss_pred EecCCCCHHHHHHHHHhC-cCEEEec
Q 017781 281 LDGGVRRGTDVFKALALG-ASGIFIG 305 (366)
Q Consensus 281 ~~GGI~~~~dv~kalalG-Ad~V~ig 305 (366)
++.-+.+..|+.+++..| +|.|++-
T Consensus 253 ~dE~~~~~~~~~~~i~~~~~d~v~~k 278 (372)
T 3tj4_A 253 LGEQLYTVDAFRSFIDAGAVAYVQPD 278 (372)
T ss_dssp ECTTCCSHHHHHHHHHTTCCSEECCC
T ss_pred eCCCccCHHHHHHHHHcCCCCEEEeC
Confidence 999999999999999987 7999885
|
| >1hg3_A Triosephosphate isomerase; thermostability, tetrameric; 2.7A {Pyrococcus woesei} SCOP: c.1.1.1 | Back alignment and structure |
|---|
Probab=94.70 E-value=1.1 Score=40.16 Aligned_cols=49 Identities=31% Similarity=0.496 Sum_probs=39.1
Q ss_pred HHHHHHHHHHcCCCceEEEecCCCCHHHHHHHHHhCcCEEEecHHHHHH
Q 017781 263 IMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFIGRPVVYS 311 (366)
Q Consensus 263 ~~~l~~i~~~~~~~i~vi~~GGI~~~~dv~kalalGAd~V~igr~~l~~ 311 (366)
++...+..+....+++|+.-|||.++.|+..+...|+|++.||++++.+
T Consensus 163 ~~~~~~~ir~~~~~~~ilyggsV~~~n~~~~~~~~~vDG~LVG~a~l~a 211 (225)
T 1hg3_A 163 ITNTVELVKKVNPEVKVLCGAGISTGEDVKKAIELGTVGVLLASGVTKA 211 (225)
T ss_dssp HHHHHHHHHHHCTTSEEEEESSCCSHHHHHHHHHTTCSEEEESHHHHTC
T ss_pred HHHHHHHHHhccCCCEEEEeCCCCcHHHHHHHHhCCCCEEEeCHHHHCC
Confidence 4333333333445799999999999999999999999999999999864
|
| >3fkr_A L-2-keto-3-deoxyarabonate dehydratase; DHDPS/NAL family, complex, pyruvate, lyase; HET: KPI; 1.80A {Azospirillum brasilense} PDB: 3fkk_A | Back alignment and structure |
|---|
Probab=94.69 E-value=0.072 Score=50.28 Aligned_cols=106 Identities=15% Similarity=0.155 Sum_probs=64.2
Q ss_pred CCCCCHHHHHHHHHhcCCCEEEEeccCHHHHHcCCcEEEEcCCCccCCCCCcc-hHHHHHHHHHHcCCCceEEEecCCCC
Q 017781 209 DRSLSWKDVKWLQTITKLPILVKGVLTAEDVQAGAAGIIVSNHGARQLDYVPA-TIMALEEVVKATQGRIPVFLDGGVRR 287 (366)
Q Consensus 209 d~~~~~~~i~~lr~~~~~pv~vK~v~~~~d~~aGad~I~vs~~gg~~~~~~~~-~~~~l~~i~~~~~~~i~vi~~GGI~~ 287 (366)
|...+++.++++.+.. .+.|+|+|++.++.|-...-... ..+++..+++.+.+++|||+--|=.+
T Consensus 23 dg~iD~~~l~~lv~~l--------------i~~Gv~gl~v~GtTGE~~~Ls~~Er~~v~~~~~~~~~grvpviaGvg~~~ 88 (309)
T 3fkr_A 23 TGDLDLASQKRAVDFM--------------IDAGSDGLCILANFSEQFAITDDERDVLTRTILEHVAGRVPVIVTTSHYS 88 (309)
T ss_dssp TSSBCHHHHHHHHHHH--------------HHTTCSCEEESSGGGTGGGSCHHHHHHHHHHHHHHHTTSSCEEEECCCSS
T ss_pred CCCcCHHHHHHHHHHH--------------HHcCCCEEEECccccCcccCCHHHHHHHHHHHHHHhCCCCcEEEecCCch
Confidence 3456676666555432 57899999998876632211111 23456666666777899998655555
Q ss_pred HHHHHH----HHHhCcCEEEecHHHHHHhhhcCHHHHHHHHHHHH
Q 017781 288 GTDVFK----ALALGASGIFIGRPVVYSLAAEGEKGVRRVLEMLR 328 (366)
Q Consensus 288 ~~dv~k----alalGAd~V~igr~~l~~l~~~G~~gv~~~~~~l~ 328 (366)
-.++++ |-.+|||++++-.|+.+...--.++++.++++.+.
T Consensus 89 t~~ai~la~~A~~~Gadavlv~~Pyy~~~~~~s~~~l~~~f~~va 133 (309)
T 3fkr_A 89 TQVCAARSLRAQQLGAAMVMAMPPYHGATFRVPEAQIFEFYARVS 133 (309)
T ss_dssp HHHHHHHHHHHHHTTCSEEEECCSCBTTTBCCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCCEEEEcCCCCccCCCCCHHHHHHHHHHHH
Confidence 555543 33479999999999762110114566555554443
|
| >3nav_A Tryptophan synthase alpha chain; alpha subunit, structural genomics, CSG center for structural genomics of infectious diseases; 2.10A {Vibrio cholerae o1 biovar el tor} SCOP: c.1.2.4 | Back alignment and structure |
|---|
Probab=94.68 E-value=0.084 Score=48.94 Aligned_cols=37 Identities=27% Similarity=0.347 Sum_probs=30.3
Q ss_pred HHHHHHHHHhcCCCEEEEe-ccCHHH----HHcCCcEEEEcC
Q 017781 214 WKDVKWLQTITKLPILVKG-VLTAED----VQAGAAGIIVSN 250 (366)
Q Consensus 214 ~~~i~~lr~~~~~pv~vK~-v~~~~d----~~aGad~I~vs~ 250 (366)
.+.++++|+.+++|+++-. +.++++ .++|||+++|..
T Consensus 197 ~~~v~~vr~~~~~Pv~vGfGIst~e~~~~~~~~gADgvIVGS 238 (271)
T 3nav_A 197 HALLERLQQFDAPPALLGFGISEPAQVKQAIEAGAAGAISGS 238 (271)
T ss_dssp HHHHHHHHHTTCCCEEECSSCCSHHHHHHHHHTTCSEEEESH
T ss_pred HHHHHHHHHhcCCCEEEECCCCCHHHHHHHHHcCCCEEEECH
Confidence 4568999999999999975 457877 689999999843
|
| >2vc6_A MOSA, dihydrodipicolinate synthase; DHDPS, TIM barrel, schiff base, lyase; HET: MCL; 1.95A {Sinorhizobium meliloti} | Back alignment and structure |
|---|
Probab=94.65 E-value=0.056 Score=50.57 Aligned_cols=87 Identities=18% Similarity=0.372 Sum_probs=54.7
Q ss_pred HHcCCcEEEEcCCCccCCCCCcc-hHHHHHHHHHHcCCCceEEEecCCCCHHHHHH----HHHhCcCEEEecHHHHHHhh
Q 017781 239 VQAGAAGIIVSNHGARQLDYVPA-TIMALEEVVKATQGRIPVFLDGGVRRGTDVFK----ALALGASGIFIGRPVVYSLA 313 (366)
Q Consensus 239 ~~aGad~I~vs~~gg~~~~~~~~-~~~~l~~i~~~~~~~i~vi~~GGI~~~~dv~k----alalGAd~V~igr~~l~~l~ 313 (366)
.+.|+|+|++.++.|....-... ..+.+..+++.+.+++|||+--|=.+-.++++ |-.+|||+|++-.|+++..
T Consensus 31 i~~Gv~gl~~~GttGE~~~Ls~~Er~~v~~~~~~~~~gr~pviaGvg~~~t~~ai~la~~A~~~Gadavlv~~P~y~~~- 109 (292)
T 2vc6_A 31 IEEGSFGLVPCGTTGESPTLSKSEHEQVVEITIKTANGRVPVIAGAGSNSTAEAIAFVRHAQNAGADGVLIVSPYYNKP- 109 (292)
T ss_dssp HHTTCSEEETTSGGGTGGGSCHHHHHHHHHHHHHHHTTSSCBEEECCCSSHHHHHHHHHHHHHTTCSEEEEECCCSSCC-
T ss_pred HHcCCCEEEECccccChhhCCHHHHHHHHHHHHHHhCCCCcEEEecCCccHHHHHHHHHHHHHcCCCEEEEcCCCCCCC-
Confidence 56799999988876643211221 23455666666667899876555445455543 3447999999999987642
Q ss_pred hcCHHHHHHHHHHHH
Q 017781 314 AEGEKGVRRVLEMLR 328 (366)
Q Consensus 314 ~~G~~gv~~~~~~l~ 328 (366)
.++++.++++.+.
T Consensus 110 --s~~~l~~~f~~ia 122 (292)
T 2vc6_A 110 --TQEGIYQHFKAID 122 (292)
T ss_dssp --CHHHHHHHHHHHH
T ss_pred --CHHHHHHHHHHHH
Confidence 4555555544443
|
| >3s5o_A 4-hydroxy-2-oxoglutarate aldolase, mitochondrial; beta barrel, schiff base, hydroxyproline metabolis; HET: KPI; 1.97A {Homo sapiens} SCOP: c.1.10.0 PDB: 3s5n_A | Back alignment and structure |
|---|
Probab=94.64 E-value=0.091 Score=49.50 Aligned_cols=105 Identities=9% Similarity=0.066 Sum_probs=65.9
Q ss_pred CCCCCHHHHHHHHHhcCCCEEEEeccCHHHHHcCCcEEEEcCCCccCCCCCcc-hHHHHHHHHHHcCCCceEEEecCCCC
Q 017781 209 DRSLSWKDVKWLQTITKLPILVKGVLTAEDVQAGAAGIIVSNHGARQLDYVPA-TIMALEEVVKATQGRIPVFLDGGVRR 287 (366)
Q Consensus 209 d~~~~~~~i~~lr~~~~~pv~vK~v~~~~d~~aGad~I~vs~~gg~~~~~~~~-~~~~l~~i~~~~~~~i~vi~~GGI~~ 287 (366)
|...+++.++++.+.. .+.|+|+|++.++.|-...-... ..+++..+++.+.+++|||+--|-.+
T Consensus 29 dg~iD~~~l~~lv~~l--------------i~~Gv~Gl~v~GtTGE~~~Ls~~Er~~v~~~~~~~~~gr~pviaGvg~~~ 94 (307)
T 3s5o_A 29 TAEVDYGKLEENLHKL--------------GTFPFRGFVVQGSNGEFPFLTSSERLEVVSRVRQAMPKNRLLLAGSGCES 94 (307)
T ss_dssp TSCBCHHHHHHHHHHH--------------TTSCCSEEEESSGGGTGGGSCHHHHHHHHHHHHHTSCTTSEEEEECCCSS
T ss_pred CCCcCHHHHHHHHHHH--------------HHcCCCEEEECccccchhhCCHHHHHHHHHHHHHHcCCCCcEEEecCCCC
Confidence 3456777666655532 46799999998876642211211 23456666666777899888555555
Q ss_pred HHHHH----HHHHhCcCEEEecHHHHHHhhhcCHHHHHHHHHHHH
Q 017781 288 GTDVF----KALALGASGIFIGRPVVYSLAAEGEKGVRRVLEMLR 328 (366)
Q Consensus 288 ~~dv~----kalalGAd~V~igr~~l~~l~~~G~~gv~~~~~~l~ 328 (366)
-.+++ .|-.+|||++++-.|+++... -.++++.++++.+.
T Consensus 95 t~~ai~la~~A~~~Gadavlv~~P~y~~~~-~s~~~l~~~f~~ia 138 (307)
T 3s5o_A 95 TQATVEMTVSMAQVGADAAMVVTPCYYRGR-MSSAALIHHYTKVA 138 (307)
T ss_dssp HHHHHHHHHHHHHTTCSEEEEECCCTTGGG-CCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCCEEEEcCCCcCCCC-CCHHHHHHHHHHHH
Confidence 55555 344589999999999876311 14566665555544
|
| >2p8b_A Mandelate racemase/muconate lactonizing enzyme family protein; enolase superfamily, prediction of function; HET: NSK; 1.70A {Bacillus cereus atcc 14579} PDB: 2p88_A* 2p8c_A* | Back alignment and structure |
|---|
Probab=94.62 E-value=0.48 Score=45.38 Aligned_cols=116 Identities=16% Similarity=0.202 Sum_probs=77.5
Q ss_pred CCHHHHHHHHHHHHHcCCCEEEEecCCCCCcchhHHHhhhcCCCCccccccccccccCCCccccchhhHHHhhhccCCCC
Q 017781 133 KDRNVVAQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLTLKNFQGLDLGKMDEANDSGLAAYVAGQIDRSL 212 (366)
Q Consensus 133 ~d~~~~~~~l~ra~~~G~~ai~vtvd~p~~g~r~~d~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~ 212 (366)
.+++.+.+.++++.+.|++++-+++... ...
T Consensus 140 ~~~~~~~~~a~~~~~~Gf~~iKik~g~~-------------------------------------------------~~~ 170 (369)
T 2p8b_A 140 ADPENMAEEAASMIQKGYQSFKMKVGTN-------------------------------------------------VKE 170 (369)
T ss_dssp CCHHHHHHHHHHHHHTTCCEEEEECCSC-------------------------------------------------HHH
T ss_pred CChHHHHHHHHHHHHcCcCEEEEEeCCC-------------------------------------------------HHH
Confidence 4677777788888889999998765421 011
Q ss_pred CHHHHHHHHHhc--CCCEEEEec--cCHHH---------HHcCCcEEEEcCCCccCCCCCcchHHHHHHHHHHcCCCceE
Q 017781 213 SWKDVKWLQTIT--KLPILVKGV--LTAED---------VQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPV 279 (366)
Q Consensus 213 ~~~~i~~lr~~~--~~pv~vK~v--~~~~d---------~~aGad~I~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~i~v 279 (366)
..+.++.+|+.+ +.++.++.- .+.++ .+.|+++|- +. ..+..++.+.++++.+ ++||
T Consensus 171 ~~e~v~avr~a~g~~~~l~vDan~~~~~~~a~~~~~~~l~~~~i~~iE-------qP-~~~~d~~~~~~l~~~~--~iPI 240 (369)
T 2p8b_A 171 DVKRIEAVRERVGNDIAIRVDVNQGWKNSANTLTALRSLGHLNIDWIE-------QP-VIADDIDAMAHIRSKT--DLPL 240 (369)
T ss_dssp HHHHHHHHHHHHCTTSEEEEECTTTTBSHHHHHHHHHTSTTSCCSCEE-------CC-BCTTCHHHHHHHHHTC--CSCE
T ss_pred HHHHHHHHHHHhCCCCeEEEECCCCCCHHHHHHHHHHHHHhCCCcEEE-------CC-CCcccHHHHHHHHHhC--CCCE
Confidence 234455555554 355555532 11111 345666553 11 1234677888888877 7999
Q ss_pred EEecCCCCHHHHHHHHHhC-cCEEEecHH
Q 017781 280 FLDGGVRRGTDVFKALALG-ASGIFIGRP 307 (366)
Q Consensus 280 i~~GGI~~~~dv~kalalG-Ad~V~igr~ 307 (366)
++++.+.+..++.+++..| +|.|++-..
T Consensus 241 ~~dE~~~~~~~~~~~i~~~~~d~v~ik~~ 269 (369)
T 2p8b_A 241 MIDEGLKSSREMRQIIKLEAADKVNIKLM 269 (369)
T ss_dssp EESTTCCSHHHHHHHHHHTCCSEEEECHH
T ss_pred EeCCCCCCHHHHHHHHHhCCCCEEEeecc
Confidence 9999999999999999987 899999754
|
| >2ojp_A DHDPS, dihydrodipicolinate synthase; dimer, lysine biosynthe lyase; HET: KGC GOL; 1.70A {Escherichia coli} PDB: 1yxc_A 1dhp_A 1yxd_A* 2ats_A* 3du0_A* 3c0j_A* 3ubs_A* 4eou_A* 3i7q_A* 3i7r_A* 3i7s_A* 2pur_A* 1s5v_A 1s5w_A 1s5t_A 3den_A* 2a6l_A 2a6n_A 3g0s_A | Back alignment and structure |
|---|
Probab=94.61 E-value=0.07 Score=49.89 Aligned_cols=101 Identities=15% Similarity=0.224 Sum_probs=63.7
Q ss_pred CCCCHHHHHHHHHhcCCCEEEEeccCHHHHHcCCcEEEEcCCCccCCCCCcc-hHHHHHHHHHHcCCCceEEEecCCCCH
Q 017781 210 RSLSWKDVKWLQTITKLPILVKGVLTAEDVQAGAAGIIVSNHGARQLDYVPA-TIMALEEVVKATQGRIPVFLDGGVRRG 288 (366)
Q Consensus 210 ~~~~~~~i~~lr~~~~~pv~vK~v~~~~d~~aGad~I~vs~~gg~~~~~~~~-~~~~l~~i~~~~~~~i~vi~~GGI~~~ 288 (366)
...+++.++++.+.. .+.|+|+|++.++.|....-... ..+++..+++.+.+++|||+--|=.+-
T Consensus 17 g~iD~~~l~~lv~~l--------------i~~Gv~gl~~~GttGE~~~Ls~~Er~~v~~~~~~~~~gr~pviaGvg~~~t 82 (292)
T 2ojp_A 17 GNVCRASLKKLIDYH--------------VASGTSAIVSVGTTGESATLNHDEHADVVMMTLDLADGRIPVIAGTGANAT 82 (292)
T ss_dssp SCBCHHHHHHHHHHH--------------HHHTCCEEEESSTTTTGGGSCHHHHHHHHHHHHHHHTTSSCEEEECCCSSH
T ss_pred CCcCHHHHHHHHHHH--------------HHcCCCEEEECccccchhhCCHHHHHHHHHHHHHHhCCCCcEEEecCCccH
Confidence 456676666555432 56799999998876643211221 234566666667778999876665566
Q ss_pred HHHHHHH----HhCcCEEEecHHHHHHhhhcCHHHHHHHHHHH
Q 017781 289 TDVFKAL----ALGASGIFIGRPVVYSLAAEGEKGVRRVLEML 327 (366)
Q Consensus 289 ~dv~kal----alGAd~V~igr~~l~~l~~~G~~gv~~~~~~l 327 (366)
.++++.. .+|||++++-.|+++.. .++++.++++.+
T Consensus 83 ~~ai~la~~a~~~Gadavlv~~P~y~~~---s~~~l~~~f~~i 122 (292)
T 2ojp_A 83 AEAISLTQRFNDSGIVGCLTVTPYYNRP---SQEGLYQHFKAI 122 (292)
T ss_dssp HHHHHHHHHTTTSSCSEEEEECCCSSCC---CHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCCCEEEECCCCCCCC---CHHHHHHHHHHH
Confidence 6665433 37999999999987642 455555444443
|
| >3e96_A Dihydrodipicolinate synthase; structural genomics, nysgrc, target 9375C, operon, PSI-2; 1.80A {Bacillus clausii ksm-k16} SCOP: c.1.10.0 | Back alignment and structure |
|---|
Probab=94.59 E-value=0.051 Score=51.47 Aligned_cols=103 Identities=19% Similarity=0.203 Sum_probs=67.4
Q ss_pred CCCCHHHHHHHHHhcCCCEEEEeccCHHHHHcCCcEEEEcCCCccCCCCCcc-hHHHHHHHHHHcCCCceEEEecCCCCH
Q 017781 210 RSLSWKDVKWLQTITKLPILVKGVLTAEDVQAGAAGIIVSNHGARQLDYVPA-TIMALEEVVKATQGRIPVFLDGGVRRG 288 (366)
Q Consensus 210 ~~~~~~~i~~lr~~~~~pv~vK~v~~~~d~~aGad~I~vs~~gg~~~~~~~~-~~~~l~~i~~~~~~~i~vi~~GGI~~~ 288 (366)
...+++.++++.+.. .+.|+|+|++.++.|....-... ..+++..+++.+.+++|||+.-|- +-
T Consensus 28 g~iD~~~l~~lv~~l--------------i~~Gv~Gl~v~GtTGE~~~Ls~eEr~~v~~~~v~~~~grvpViaGvg~-~t 92 (316)
T 3e96_A 28 GSIDWHHYKETVDRI--------------VDNGIDVIVPCGNTSEFYALSLEEAKEEVRRTVEYVHGRALVVAGIGY-AT 92 (316)
T ss_dssp CCBCHHHHHHHHHHH--------------HTTTCCEECTTSGGGTGGGSCHHHHHHHHHHHHHHHTTSSEEEEEECS-SH
T ss_pred CCCCHHHHHHHHHHH--------------HHcCCCEEEeCccccCcccCCHHHHHHHHHHHHHHhCCCCcEEEEeCc-CH
Confidence 345666666655532 46799999988876632211111 234566666777778999987674 77
Q ss_pred HHHHH----HHHhCcCEEEecHHHHHHhhhcCHHHHHHHHHHHHHH
Q 017781 289 TDVFK----ALALGASGIFIGRPVVYSLAAEGEKGVRRVLEMLREE 330 (366)
Q Consensus 289 ~dv~k----alalGAd~V~igr~~l~~l~~~G~~gv~~~~~~l~~e 330 (366)
.++++ |-.+|||+|++-.|+.+. -.++++.++++.+.+.
T Consensus 93 ~~ai~la~~A~~~Gadavlv~~P~y~~---~s~~~l~~~f~~va~a 135 (316)
T 3e96_A 93 STAIELGNAAKAAGADAVMIHMPIHPY---VTAGGVYAYFRDIIEA 135 (316)
T ss_dssp HHHHHHHHHHHHHTCSEEEECCCCCSC---CCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCCCEEEEcCCCCCC---CCHHHHHHHHHHHHHh
Confidence 77664 445899999999998653 2567776666666554
|
| >3d0c_A Dihydrodipicolinate synthase; lysine biosynthesis, pyruvate, TIM barrel, NYSGXRC, PSI-2, structural genomics; 1.90A {Oceanobacillus iheyensis HTE831} | Back alignment and structure |
|---|
Probab=94.56 E-value=0.054 Score=51.29 Aligned_cols=103 Identities=18% Similarity=0.240 Sum_probs=64.9
Q ss_pred CCCCCHHHHHHHHHhcCCCEEEEeccCHHHHHcCCcEEEEcCCCccCCCCCcc-hHHHHHHHHHHcCCCceEEEecCCCC
Q 017781 209 DRSLSWKDVKWLQTITKLPILVKGVLTAEDVQAGAAGIIVSNHGARQLDYVPA-TIMALEEVVKATQGRIPVFLDGGVRR 287 (366)
Q Consensus 209 d~~~~~~~i~~lr~~~~~pv~vK~v~~~~d~~aGad~I~vs~~gg~~~~~~~~-~~~~l~~i~~~~~~~i~vi~~GGI~~ 287 (366)
|...+++.++++.+.. .+.|+|+|++.++.|....-... ..+++..+++.+.+++|||+--|= +
T Consensus 27 dg~iD~~~l~~lv~~l--------------i~~Gv~gl~v~GtTGE~~~Ls~eEr~~vi~~~~~~~~grvpViaGvg~-s 91 (314)
T 3d0c_A 27 TREIDWKGLDDNVEFL--------------LQNGIEVIVPNGNTGEFYALTIEEAKQVATRVTELVNGRATVVAGIGY-S 91 (314)
T ss_dssp TCCBCHHHHHHHHHHH--------------HHTTCSEECTTSGGGTGGGSCHHHHHHHHHHHHHHHTTSSEEEEEECS-S
T ss_pred CCCCCHHHHHHHHHHH--------------HHcCCCEEEECcccCChhhCCHHHHHHHHHHHHHHhCCCCeEEecCCc-C
Confidence 3456777666655532 56799999988766532211211 234566666677778998864444 5
Q ss_pred HHHHHH----HHHhCcCEEEecHHHHHHhhhcCHHHHHHHHHHHHH
Q 017781 288 GTDVFK----ALALGASGIFIGRPVVYSLAAEGEKGVRRVLEMLRE 329 (366)
Q Consensus 288 ~~dv~k----alalGAd~V~igr~~l~~l~~~G~~gv~~~~~~l~~ 329 (366)
-.++++ |-.+|||++++-.|+++.. .++++.+++..+.+
T Consensus 92 t~~ai~la~~A~~~Gadavlv~~P~y~~~---s~~~l~~~f~~va~ 134 (314)
T 3d0c_A 92 VDTAIELGKSAIDSGADCVMIHQPVHPYI---TDAGAVEYYRNIIE 134 (314)
T ss_dssp HHHHHHHHHHHHHTTCSEEEECCCCCSCC---CHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCCEEEECCCCCCCC---CHHHHHHHHHHHHH
Confidence 555553 3347999999999987642 46666666555544
|
| >3qfe_A Putative dihydrodipicolinate synthase family PROT; seattle structural genomics center for infectious disease, S coccidioides, valley fever; 2.35A {Coccidioides immitis} | Back alignment and structure |
|---|
Probab=94.54 E-value=0.1 Score=49.38 Aligned_cols=103 Identities=14% Similarity=0.225 Sum_probs=62.3
Q ss_pred CCCCHHHHHHHHHhcCCCEEEEeccCHHHHHcCCcEEEEcCCCccCCCCCcc-hHHHHHHHHHHcCCCceEEEecCCCCH
Q 017781 210 RSLSWKDVKWLQTITKLPILVKGVLTAEDVQAGAAGIIVSNHGARQLDYVPA-TIMALEEVVKATQGRIPVFLDGGVRRG 288 (366)
Q Consensus 210 ~~~~~~~i~~lr~~~~~pv~vK~v~~~~d~~aGad~I~vs~~gg~~~~~~~~-~~~~l~~i~~~~~~~i~vi~~GGI~~~ 288 (366)
...+++.++++.+.. .+.|+|+|++.++.|-...-... ..+++..+++.+.+++|||+--|=.+-
T Consensus 27 g~iD~~~l~~lv~~l--------------i~~Gv~gl~v~GtTGE~~~Ls~~Er~~v~~~~~~~~~grvpviaGvg~~~t 92 (318)
T 3qfe_A 27 DTLDLASQERYYAYL--------------ARSGLTGLVILGTNAEAFLLTREERAQLIATARKAVGPDFPIMAGVGAHST 92 (318)
T ss_dssp TEECHHHHHHHHHHH--------------HTTTCSEEEESSGGGTGGGSCHHHHHHHHHHHHHHHCTTSCEEEECCCSSH
T ss_pred CCCCHHHHHHHHHHH--------------HHcCCCEEEeCccccChhhCCHHHHHHHHHHHHHHhCCCCcEEEeCCCCCH
Confidence 345666666555432 46799999998876632211111 234566666677778999885565566
Q ss_pred HHHHH----HHHhCcCEEEecHHHHHHhhhcCHHHHHHHHHHH
Q 017781 289 TDVFK----ALALGASGIFIGRPVVYSLAAEGEKGVRRVLEML 327 (366)
Q Consensus 289 ~dv~k----alalGAd~V~igr~~l~~l~~~G~~gv~~~~~~l 327 (366)
.++++ |-.+|||++++-.|++|.-. ..++++.++++.+
T Consensus 93 ~~ai~la~~a~~~Gadavlv~~P~y~~kp-~~~~~l~~~f~~i 134 (318)
T 3qfe_A 93 RQVLEHINDASVAGANYVLVLPPAYFGKA-TTPPVIKSFFDDV 134 (318)
T ss_dssp HHHHHHHHHHHHHTCSEEEECCCCC---C-CCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCCEEEEeCCcccCCC-CCHHHHHHHHHHH
Confidence 65553 33489999999999766310 1345555554444
|
| >1wbh_A KHG/KDPG aldolase; lyase; 1.55A {Escherichia coli} SCOP: c.1.10.1 PDB: 2c0a_A 1wau_A 1eua_A 1eun_A 1fq0_A* 1fwr_A* | Back alignment and structure |
|---|
Probab=94.46 E-value=0.11 Score=46.28 Aligned_cols=76 Identities=18% Similarity=0.248 Sum_probs=51.5
Q ss_pred HHHHHHHHHhcCCCEEEEe-ccCHHH----HHcCCcEEEEcCCCccCCCCCcchHHHHHHHHHHcCCCceEEEecCCCCH
Q 017781 214 WKDVKWLQTITKLPILVKG-VLTAED----VQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRG 288 (366)
Q Consensus 214 ~~~i~~lr~~~~~pv~vK~-v~~~~d----~~aGad~I~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~i~vi~~GGI~~~ 288 (366)
.+.++.+++.++-.++..+ +.+.++ .++|||+|+..+ ...+.+ +.++.. .++++. |+.|+
T Consensus 55 ~~~i~~l~~~~~~~~vgagtvi~~d~~~~A~~aGAd~v~~p~----------~d~~v~-~~~~~~--g~~~i~--G~~t~ 119 (214)
T 1wbh_A 55 VDAIRAIAKEVPEAIVGAGTVLNPQQLAEVTEAGAQFAISPG----------LTEPLL-KAATEG--TIPLIP--GISTV 119 (214)
T ss_dssp HHHHHHHHHHCTTSEEEEESCCSHHHHHHHHHHTCSCEEESS----------CCHHHH-HHHHHS--SSCEEE--EESSH
T ss_pred HHHHHHHHHHCcCCEEeeCEEEEHHHHHHHHHcCCCEEEcCC----------CCHHHH-HHHHHh--CCCEEE--ecCCH
Confidence 4568888888753333333 345554 999999996422 122333 333344 567766 49999
Q ss_pred HHHHHHHHhCcCEEEe
Q 017781 289 TDVFKALALGASGIFI 304 (366)
Q Consensus 289 ~dv~kalalGAd~V~i 304 (366)
+++.+|+.+|||.|.+
T Consensus 120 ~e~~~A~~~Gad~v~~ 135 (214)
T 1wbh_A 120 SELMLGMDYGLKEFKF 135 (214)
T ss_dssp HHHHHHHHTTCCEEEE
T ss_pred HHHHHHHHCCCCEEEE
Confidence 9999999999999998
|
| >1s2w_A Phosphoenolpyruvate phosphomutase; phosphonopyruvate, phosphonate biosynthesis pathway, isomera; 1.69A {Mytilus edulis} SCOP: c.1.12.7 PDB: 1m1b_A 1s2t_A 1s2v_A 1pym_A 1s2u_A | Back alignment and structure |
|---|
Probab=94.43 E-value=0.9 Score=42.46 Aligned_cols=65 Identities=20% Similarity=0.144 Sum_probs=45.2
Q ss_pred HHcCCcEEEEcCCCccCCCCCcchHHHHHHHHHHcCCCceEEEecCCCCHHHHHHHHHhCcCEEEecHHHHHH
Q 017781 239 VQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFIGRPVVYS 311 (366)
Q Consensus 239 ~~aGad~I~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~i~vi~~GGI~~~~dv~kalalGAd~V~igr~~l~~ 311 (366)
.++|||.|++-. +.++.+.+.++.+.++..+|+++.-+-....++.+.-++|...|.++...+.+
T Consensus 180 ~eAGAd~i~~e~--------~~~~~~~~~~i~~~~~~~~P~i~~~~~~~~~~~~eL~~lGv~~v~~~~~~~ra 244 (295)
T 1s2w_A 180 RNAGADAILMHS--------KKADPSDIEAFMKAWNNQGPVVIVPTKYYKTPTDHFRDMGVSMVIWANHNLRA 244 (295)
T ss_dssp HHTTCSEEEECC--------CSSSSHHHHHHHHHHTTCSCEEECCSTTTTSCHHHHHHHTCCEEEECSHHHHH
T ss_pred HHcCCCEEEEcC--------CCCCHHHHHHHHHHcCCCCCEEEeCCCCCCCCHHHHHHcCCcEEEEChHHHHH
Confidence 999999998732 23456777888888854599998733111112444556899999999877665
|
| >2yyu_A Orotidine 5'-phosphate decarboxylase; TIM barrel, structural genomics, NPPSFA, national project on structural and functional analyses; HET: C5P; 2.20A {Geobacillus kaustophilus} PDB: 2yyt_A* | Back alignment and structure |
|---|
Probab=94.42 E-value=0.069 Score=48.63 Aligned_cols=58 Identities=24% Similarity=0.275 Sum_probs=41.2
Q ss_pred HHcCCcEEEEcCCCccCCCCCcchHHHHHHHHHHcCCCceEEEecCCCCH-H---------HHHHHHHhCcCEEEecHHH
Q 017781 239 VQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRG-T---------DVFKALALGASGIFIGRPV 308 (366)
Q Consensus 239 ~~aGad~I~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~i~vi~~GGI~~~-~---------dv~kalalGAd~V~igr~~ 308 (366)
.+.|.++++.+ ..+ +.++++..+. .+++++|||+-. . .+.+++..|||.+.+||++
T Consensus 153 ~~~G~~g~V~~------------~~e-i~~lr~~~~~-~~i~V~gGI~~~g~~~~dq~rv~t~~~a~~aGad~iVvGr~I 218 (246)
T 2yyu_A 153 KESGLDGVVCS------------ANE-AAFIKERCGA-SFLAVTPGIRFADDAAHDQVRVVTPRKARALGSDYIVIGRSL 218 (246)
T ss_dssp HHHTCCEEECC------------HHH-HHHHHHHHCT-TSEEEECCCCCCC-------CCCCHHHHHHHTCSEEEECHHH
T ss_pred HHhCCCEEEeC------------HHH-HHHHHHhcCC-CCEEEeCCcCCCCCCcccccccCCHHHHHHcCCCEEEECHhh
Confidence 45677876542 234 6666666643 349999999843 2 2777888999999999998
Q ss_pred HH
Q 017781 309 VY 310 (366)
Q Consensus 309 l~ 310 (366)
+.
T Consensus 219 ~~ 220 (246)
T 2yyu_A 219 TR 220 (246)
T ss_dssp HT
T ss_pred cC
Confidence 64
|
| >1zfj_A Inosine monophosphate dehydrogenase; IMPDH, CBS domains, oxidoreductase; HET: IMP; 1.90A {Streptococcus pyogenes} SCOP: c.1.5.1 d.37.1.1 | Back alignment and structure |
|---|
Probab=94.41 E-value=0.065 Score=53.64 Aligned_cols=246 Identities=15% Similarity=0.182 Sum_probs=133.0
Q ss_pred hcccceeeecccc-CCCCCCccceeEcC-cccCCceEecccccccccCChhhHHHHHHHHHcCCceecCCCCCCCHHHHh
Q 017781 41 NAFSRILFRPRIL-IDVSKIDMNTTVLG-FKISMPIMIAPTAMQKMAHPEGEYATARAASAAGTIMTLSSWSTSSVEEVA 118 (366)
Q Consensus 41 ~~f~~i~l~pr~l-~~~~~vd~st~l~g-~~l~~Pi~iApm~~~~l~~~~~e~~la~aa~~~G~~~~vs~~~~~~~e~i~ 118 (366)
-.||++.|+|... .+..++|+++++-. ..+..||+.+||...+ +..++.+..+.|....+.. ..+.++..
T Consensus 12 ~~~~d~~~~p~~~~~~p~~v~~~t~lt~~l~~~~Piv~a~M~~vt------~~eLa~av~~~Gg~G~i~~--~~~~e~~~ 83 (491)
T 1zfj_A 12 YTFDDVLLIPAESHVLPNEVDLKTKLADNLTLNIPIITAAMDTVT------GSKMAIAIARAGGLGVIHK--NMSITEQA 83 (491)
T ss_dssp CCGGGEEECCCCCCSCGGGCCCCEEEETTEEESSSEEECCCTTTC------SHHHHHHHHHTTCEEEECC--SSCHHHHH
T ss_pred CChhhEEeccCcCCcCccccccchhhhhcceecCceEecCchhcc------HHHHHHHHHHcCCceEEeC--CCCHHHHH
Confidence 3699999999876 35578999998854 6788999999997532 5578888888887766642 24554432
Q ss_pred c-------cCC--CceEEEeeecCCHHHHHHHHHHHHHcCCCEEEEec--CC-CCCc-chhHHHhhhcCCCCcccccccc
Q 017781 119 S-------TGP--GIRFFQLYVYKDRNVVAQLVRRAERAGFKAIALTV--DT-PRLG-RREADIKNRFTLPPFLTLKNFQ 185 (366)
Q Consensus 119 ~-------~~~--~~~~~Qly~~~d~~~~~~~l~ra~~~G~~ai~vtv--d~-p~~g-~r~~d~~~~~~~p~~~~~~~~~ 185 (366)
+ ... .+-.+-+. ......+.++...+.+...+.|.- +. -..| -..+|+.... +....+..+.
T Consensus 84 ~~i~~v~~~~~im~~~~~~v~---~~~tv~ea~~~m~~~~~~~~pVvd~~~~~~lvGivt~~Dl~~~~--~~~~~v~~im 158 (491)
T 1zfj_A 84 EEVRKVKRSENGVIIDPFFLT---PEHKVSEAEELMQRYRISGVPIVETLANRKLVGIITNRDMRFIS--DYNAPISEHM 158 (491)
T ss_dssp HHHHHHHHHTTTTSSSCCCBC---SSSBHHHHHHHHHHTTCSEEEEESCTTTCBEEEEEEHHHHHHCS--CSSSBTTTSC
T ss_pred HHHHHHhhHHhcCcCCCeEEC---CCCcHHHHHHHHHHcCCCEEEEEEeCCCCEEEEEEEHHHHhhhc--cCCCcHHHHc
Confidence 2 111 11111111 223356677777788888776642 11 0011 1223333210 0000000000
Q ss_pred cc-ccCCCc-cccchhhHHHhhhc-------cC------CCCCHHH-HHHHHH-----hcCCCEEEEeccC-----HHH-
Q 017781 186 GL-DLGKMD-EANDSGLAAYVAGQ-------ID------RSLSWKD-VKWLQT-----ITKLPILVKGVLT-----AED- 238 (366)
Q Consensus 186 ~~-~~~~~~-~~~~~~~~~~~~~~-------~d------~~~~~~~-i~~lr~-----~~~~pv~vK~v~~-----~~d- 238 (366)
.- ....+. ..........+... .| .-.+.++ ++.+.+ ....++.+.+..+ .+.
T Consensus 159 ~~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVVd~~g~lvGivt~~Dil~~~~~~~~~~d~~~~~~vg~~i~~~~~~~~~a 238 (491)
T 1zfj_A 159 TSEHLVTAAVGTDLETAERILHEHRIEKLPLVDNSGRLSGLITIKDIEKVIEFPHAAKDEFGRLLVAAAVGVTSDTFERA 238 (491)
T ss_dssp CCSCCCCEETTCCHHHHHHHHHHTTCSEEEEECTTSBEEEEEEHHHHHHHHHCTTCCBCTTSCBCCEEEECSSTTHHHHH
T ss_pred CCCCCEEECCCCCHHHHHHHHHHcCCCEEEEEcCCCcEEEEEEHHHHHHHHhccccccCcCCcEEEEEeccCchhHHHHH
Confidence 00 000000 00000000000000 00 1124444 444442 0012222222222 232
Q ss_pred ---HHcCCcEEEEcCCCccCCCCCcchHHHHHHHHHHcCCCceEEEecCCCCHHHHHHHHHhCcCEEEec
Q 017781 239 ---VQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFIG 305 (366)
Q Consensus 239 ---~~aGad~I~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~i~vi~~GGI~~~~dv~kalalGAd~V~ig 305 (366)
.++|+|.|+++..+|+ ....++.+.++++.++ .+|++ .|+|.+.+++.+++.+|||+|.+|
T Consensus 239 ~~l~~~G~d~ivi~~a~g~----~~~~~~~i~~l~~~~p-~~pvi-~G~v~t~~~a~~~~~~Gad~I~vg 302 (491)
T 1zfj_A 239 EALFEAGADAIVIDTAHGH----SAGVLRKIAEIRAHFP-NRTLI-AGNIATAEGARALYDAGVDVVKVG 302 (491)
T ss_dssp HHHHHHTCSEEEECCSCTT----CHHHHHHHHHHHHHCS-SSCEE-EEEECSHHHHHHHHHTTCSEEEEC
T ss_pred HHHHHcCCCeEEEeeecCc----chhHHHHHHHHHHHCC-CCcEe-CCCccCHHHHHHHHHcCCCEEEEC
Confidence 8899999999875442 2245677888887764 68998 899999999999999999999887
|
| >3dg3_A Muconate cycloisomerase; muconate lactonizing enzyme, muconolactone binding; 1.60A {Mycobacterium smegmatis} PDB: 3dg6_A* 3dg7_A* | Back alignment and structure |
|---|
Probab=94.39 E-value=0.4 Score=46.05 Aligned_cols=86 Identities=17% Similarity=0.161 Sum_probs=59.3
Q ss_pred HHHHHHHHHhc--CCCEEEEec--cCHHH--------HHcCCcEEEEcCCCccCCCCCcchHHHHHHHHHHcCCCceEEE
Q 017781 214 WKDVKWLQTIT--KLPILVKGV--LTAED--------VQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFL 281 (366)
Q Consensus 214 ~~~i~~lr~~~--~~pv~vK~v--~~~~d--------~~aGad~I~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~i~vi~ 281 (366)
.+.++.+|+.+ +.++.+..- .+.++ .+.|+++|- + ...+..++.+.++++.. .+||++
T Consensus 172 ~~~v~avR~a~g~~~~l~vDan~~~~~~~a~~~~~~l~~~~i~~iE-------q-P~~~~d~~~~~~l~~~~--~iPIa~ 241 (367)
T 3dg3_A 172 TAVVRALRERFGDAIELYVDGNRGWSAAESLRAMREMADLDLLFAE-------E-LCPADDVLSRRRLVGQL--DMPFIA 241 (367)
T ss_dssp HHHHHHHHHHHGGGSEEEEECTTCSCHHHHHHHHHHTTTSCCSCEE-------S-CSCTTSHHHHHHHHHHC--SSCEEE
T ss_pred HHHHHHHHHHhCCCCEEEEECCCCCCHHHHHHHHHHHHHhCCCEEE-------C-CCCcccHHHHHHHHHhC--CCCEEe
Confidence 45566777765 456666632 34443 445666663 1 11223567788888877 799999
Q ss_pred ecCCCCHHHHHHHHHhC-cCEEEecHHHH
Q 017781 282 DGGVRRGTDVFKALALG-ASGIFIGRPVV 309 (366)
Q Consensus 282 ~GGI~~~~dv~kalalG-Ad~V~igr~~l 309 (366)
++.+.+..|+.+++..| +|.|++--..+
T Consensus 242 dE~~~~~~~~~~~i~~~~~d~v~~k~~~~ 270 (367)
T 3dg3_A 242 DESVPTPADVTREVLGGSATAISIKTART 270 (367)
T ss_dssp CTTCSSHHHHHHHHHHTSCSEEEECHHHH
T ss_pred cCCcCCHHHHHHHHHcCCCCEEEeehhhh
Confidence 99999999999999988 89999965443
|
| >3toy_A Mandelate racemase/muconate lactonizing enzyme FA protein; enolase, magnesium binding site, lyase; HET: P4C; 1.80A {Bradyrhizobium SP} PDB: 3tte_A* | Back alignment and structure |
|---|
Probab=94.28 E-value=0.35 Score=46.88 Aligned_cols=116 Identities=16% Similarity=0.123 Sum_probs=79.7
Q ss_pred CCHHHHHHHHHHHHHc-CCCEEEEecCCCCCcchhHHHhhhcCCCCccccccccccccCCCccccchhhHHHhhhccCCC
Q 017781 133 KDRNVVAQLVRRAERA-GFKAIALTVDTPRLGRREADIKNRFTLPPFLTLKNFQGLDLGKMDEANDSGLAAYVAGQIDRS 211 (366)
Q Consensus 133 ~d~~~~~~~l~ra~~~-G~~ai~vtvd~p~~g~r~~d~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~ 211 (366)
.+++.+.+.++++.+. |++++=+.++.+ ++.
T Consensus 166 ~~~e~~~~~a~~~~~~~G~~~~KlKvG~~------------------------------------------------~~~ 197 (383)
T 3toy_A 166 LDARDDERTLRTACDEHGFRAIKSKGGHG------------------------------------------------DLA 197 (383)
T ss_dssp CCHHHHHHHHHHHHHTSCCCEEEEECCSS------------------------------------------------CHH
T ss_pred CCHHHHHHHHHHHHHccCCcEEEEecCCC------------------------------------------------CHH
Confidence 4677777777777777 999887765421 011
Q ss_pred CCHHHHHHHHHhc--CCCEEEEec--cCHHH--------HHcCCcEEEEcCCCccCCCCCcchHHHHHHHHHHcCCCceE
Q 017781 212 LSWKDVKWLQTIT--KLPILVKGV--LTAED--------VQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPV 279 (366)
Q Consensus 212 ~~~~~i~~lr~~~--~~pv~vK~v--~~~~d--------~~aGad~I~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~i~v 279 (366)
.+.+.++.+|+.+ +.++.+..- .+.++ .+.|+++|- + ...+..++.+.++++.. .+||
T Consensus 198 ~d~~~v~avR~a~G~~~~l~vDaN~~~~~~~A~~~~~~l~~~~i~~iE-------e-P~~~~d~~~~~~l~~~~--~iPI 267 (383)
T 3toy_A 198 TDEAMIKGLRALLGPDIALMLDFNQSLDPAEATRRIARLADYDLTWIE-------E-PVPQENLSGHAAVRERS--EIPI 267 (383)
T ss_dssp HHHHHHHHHHHHHCTTSEEEEECTTCSCHHHHHHHHHHHGGGCCSEEE-------C-CSCTTCHHHHHHHHHHC--SSCE
T ss_pred HHHHHHHHHHHHhCCCCeEEEeCCCCCCHHHHHHHHHHHHhhCCCEEE-------C-CCCcchHHHHHHHHhhc--CCCE
Confidence 2345677777765 456666632 34443 556777774 1 11223577788888877 7999
Q ss_pred EEecCCCCHHHHHHHHHhC-cCEEEecH
Q 017781 280 FLDGGVRRGTDVFKALALG-ASGIFIGR 306 (366)
Q Consensus 280 i~~GGI~~~~dv~kalalG-Ad~V~igr 306 (366)
+++.-+.+..|+.+++..| +|.|++--
T Consensus 268 a~dE~~~~~~~~~~~i~~~a~d~v~ik~ 295 (383)
T 3toy_A 268 QAGENWWFPRGFAEAIAAGASDFIMPDL 295 (383)
T ss_dssp EECTTCCHHHHHHHHHHHTCCSEECCCT
T ss_pred EeCCCcCCHHHHHHHHHcCCCCEEEeCc
Confidence 9999999999999999988 79988863
|
| >3dz1_A Dihydrodipicolinate synthase; lysine biosynthesis, pyruvate, TIM barrel, NYSGXRC, PSI2, structural genomics; 1.87A {Rhodopseudomonas palustris} SCOP: c.1.10.0 | Back alignment and structure |
|---|
Probab=94.21 E-value=0.15 Score=48.23 Aligned_cols=103 Identities=13% Similarity=0.171 Sum_probs=66.2
Q ss_pred CCCCHHHHHHHHHhcCCCEEEEeccCHHHHHcCCcEEEEcCCCccCCCCCcc-hHHHHHHHHHHcCCCceEEEecCCCCH
Q 017781 210 RSLSWKDVKWLQTITKLPILVKGVLTAEDVQAGAAGIIVSNHGARQLDYVPA-TIMALEEVVKATQGRIPVFLDGGVRRG 288 (366)
Q Consensus 210 ~~~~~~~i~~lr~~~~~pv~vK~v~~~~d~~aGad~I~vs~~gg~~~~~~~~-~~~~l~~i~~~~~~~i~vi~~GGI~~~ 288 (366)
...+++.++++.+.. .+.|+|+|++.++.|-...-... ..+++..+++.+ +++|||+--|=.+-
T Consensus 24 g~iD~~~l~~lv~~l--------------i~~Gv~Gl~v~GtTGE~~~Lt~~Er~~v~~~~v~~~-grvpViaGvg~~~t 88 (313)
T 3dz1_A 24 GKIDDVSIDRLTDFY--------------AEVGCEGVTVLGILGEAPKLDAAEAEAVATRFIKRA-KSMQVIVGVSAPGF 88 (313)
T ss_dssp SCBCHHHHHHHHHHH--------------HHTTCSEEEESTGGGTGGGSCHHHHHHHHHHHHHHC-TTSEEEEECCCSSH
T ss_pred CCcCHHHHHHHHHHH--------------HHCCCCEEEeCccCcChhhCCHHHHHHHHHHHHHHc-CCCcEEEecCCCCH
Confidence 345666665554432 56899999998876632211111 234566667777 79999986565566
Q ss_pred HHHHH----HHHhCcCEEEecHHHHHHhhhcCHHHHHHHHHHHHHHH
Q 017781 289 TDVFK----ALALGASGIFIGRPVVYSLAAEGEKGVRRVLEMLREEF 331 (366)
Q Consensus 289 ~dv~k----alalGAd~V~igr~~l~~l~~~G~~gv~~~~~~l~~el 331 (366)
.++++ |-.+|||++++-.|+ +. ..++++.++++.+.+..
T Consensus 89 ~~ai~la~~A~~~Gadavlv~~P~-~~---~s~~~l~~~f~~va~a~ 131 (313)
T 3dz1_A 89 AAMRRLARLSMDAGAAGVMIAPPP-SL---RTDEQITTYFRQATEAI 131 (313)
T ss_dssp HHHHHHHHHHHHHTCSEEEECCCT-TC---CSHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCCEEEECCCC-CC---CCHHHHHHHHHHHHHhC
Confidence 66553 334899999999998 32 25677766666665543
|
| >3h5d_A DHDPS, dihydrodipicolinate synthase; lysine biosynthesis, amino-ACI biosynthesis, schiff base, cytoplasm, diaminopimelate biosy lyase; HET: MES; 1.99A {Streptococcus pneumoniae} | Back alignment and structure |
|---|
Probab=94.15 E-value=0.11 Score=49.07 Aligned_cols=86 Identities=15% Similarity=0.271 Sum_probs=56.2
Q ss_pred HHcCCcEEEEcCCCccCCCCCcc-hHHHHHHHHHHcCCCceEEEecCCCCHHHHHH----HHHhCc-CEEEecHHHHHHh
Q 017781 239 VQAGAAGIIVSNHGARQLDYVPA-TIMALEEVVKATQGRIPVFLDGGVRRGTDVFK----ALALGA-SGIFIGRPVVYSL 312 (366)
Q Consensus 239 ~~aGad~I~vs~~gg~~~~~~~~-~~~~l~~i~~~~~~~i~vi~~GGI~~~~dv~k----alalGA-d~V~igr~~l~~l 312 (366)
.+.|+|+|++.++.|....-... ..+++..+++.+.+++|||+.-|=.+-.++++ |-.+|| |++++-.|+++..
T Consensus 38 i~~Gv~Gl~v~GtTGE~~~Ls~~Er~~v~~~~~~~~~grvpViaGvg~~~t~~ai~la~~A~~~Ga~davlv~~P~y~~~ 117 (311)
T 3h5d_A 38 LAHHTDGILLAGTTAESPTLTHDEELELFAAVQKVVNGRVPLIAGVGTNDTRDSIEFVKEVAEFGGFAAGLAIVPYYNKP 117 (311)
T ss_dssp HHTTCCCEEESSTTTTGGGSCHHHHHHHHHHHHHHSCSSSCEEEECCCSSHHHHHHHHHHHHHSCCCSEEEEECCCSSCC
T ss_pred HHcCCCEEEECccccChhhCCHHHHHHHHHHHHHHhCCCCcEEEeCCCcCHHHHHHHHHHHHhcCCCcEEEEcCCCCCCC
Confidence 56799999998876643211211 23456666677777899998666656666664 334697 9999999987642
Q ss_pred hhcCHHHHHHHHHHH
Q 017781 313 AAEGEKGVRRVLEML 327 (366)
Q Consensus 313 ~~~G~~gv~~~~~~l 327 (366)
.++++.++++.+
T Consensus 118 ---s~~~l~~~f~~v 129 (311)
T 3h5d_A 118 ---SQEGMYQHFKAI 129 (311)
T ss_dssp ---CHHHHHHHHHHH
T ss_pred ---CHHHHHHHHHHH
Confidence 355555444443
|
| >3tfx_A Orotidine 5'-phosphate decarboxylase; PSI-biology, nysgrc, 000529, structural genomics, NEW YORK S genomics research consortium; 2.19A {Lactobacillus acidophilus} | Back alignment and structure |
|---|
Probab=94.09 E-value=0.098 Score=48.17 Aligned_cols=74 Identities=23% Similarity=0.476 Sum_probs=48.4
Q ss_pred HHcCCcEEEEcCCCccCCCCCcchHHHHHHHHHHcCCCceEEEecCCCCHHH----------HHHHHHhCcCEEEecHHH
Q 017781 239 VQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTD----------VFKALALGASGIFIGRPV 308 (366)
Q Consensus 239 ~~aGad~I~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~i~vi~~GGI~~~~d----------v~kalalGAd~V~igr~~ 308 (366)
.++|+|++++|. +.+..+++.++.+ -++++.|||-..+ +.+++..|||.+.+||++
T Consensus 154 ~~~G~dGvV~s~-------------~e~~~ir~~~~~~-f~~vtPGIr~~g~~~gDQ~Rv~T~~~a~~aGad~iVvGr~I 219 (259)
T 3tfx_A 154 KHSGADGVICSP-------------LEVKKLHENIGDD-FLYVTPGIRPAGNAKDDQSRVATPKMAKEWGSSAIVVGRPI 219 (259)
T ss_dssp HHTTCCEEECCG-------------GGHHHHHHHHCSS-SEEEECCCCCC-----------CHHHHHHTTCSEEEECHHH
T ss_pred HHhCCCEEEECH-------------HHHHHHHhhcCCc-cEEEcCCcCCCCCCcCCccccCCHHHHHHcCCCEEEEChHH
Confidence 578999998742 1234555555433 3678899986432 778899999999999997
Q ss_pred HHHhhhcCHHHHHHHHHHHHHHHH
Q 017781 309 VYSLAAEGEKGVRRVLEMLREEFE 332 (366)
Q Consensus 309 l~~l~~~G~~gv~~~~~~l~~el~ 332 (366)
..+ ..+ ...++.++++++
T Consensus 220 ~~a---~dp---~~a~~~i~~~~~ 237 (259)
T 3tfx_A 220 TLA---SDP---KAAYEAIKKEFN 237 (259)
T ss_dssp HTS---SSH---HHHHHHHHHHHT
T ss_pred hCC---CCH---HHHHHHHHHHHH
Confidence 643 122 234556666543
|
| >3tsm_A IGPS, indole-3-glycerol phosphate synthase; structural genomics, ssgcid, seattle structural GE center for infectious disease, lyase; 2.15A {Brucella melitensis} SCOP: c.1.2.0 | Back alignment and structure |
|---|
Probab=94.08 E-value=0.2 Score=46.34 Aligned_cols=65 Identities=22% Similarity=0.160 Sum_probs=51.9
Q ss_pred HHcCCcEEEEcCCCccCCCCCcchHHHHHHHHHHcCCCceEEEecCCCCHHHHHHHHHhCcCEEEecHHHH
Q 017781 239 VQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFIGRPVV 309 (366)
Q Consensus 239 ~~aGad~I~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~i~vi~~GGI~~~~dv~kalalGAd~V~igr~~l 309 (366)
.++||++|.|-.-.+. .. ...+.|..+++.+ ++||+.-..|.+..++..+.++|||+|.++...+
T Consensus 89 ~~~GA~~IsVltd~~~--f~--Gs~~~L~~ir~~v--~lPVl~Kdfi~d~~qi~ea~~~GAD~VlLi~a~L 153 (272)
T 3tsm_A 89 EEGGAACLSVLTDTPS--FQ--GAPEFLTAARQAC--SLPALRKDFLFDPYQVYEARSWGADCILIIMASV 153 (272)
T ss_dssp HHTTCSEEEEECCSTT--TC--CCHHHHHHHHHTS--SSCEEEESCCCSTHHHHHHHHTTCSEEEEETTTS
T ss_pred HHCCCCEEEEeccccc--cC--CCHHHHHHHHHhc--CCCEEECCccCCHHHHHHHHHcCCCEEEEccccc
Confidence 7899999987542211 11 2556778888877 8999999999999999999999999999997654
|
| >2hxt_A L-fuconate dehydratase; enolase superfamily, D-erythromohydr unknown function; HET: EHM; 1.70A {Xanthomonas campestris PV} PDB: 1yey_A 2hxu_A* 2hne_A | Back alignment and structure |
|---|
Probab=94.00 E-value=0.37 Score=47.53 Aligned_cols=114 Identities=15% Similarity=0.181 Sum_probs=79.0
Q ss_pred CHHHHHHHHHHHHHcCCCEEEEecCCCCCcchhHHHhhhcCCCCccccccccccccCCCccccchhhHHHhhhccCCCCC
Q 017781 134 DRNVVAQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLTLKNFQGLDLGKMDEANDSGLAAYVAGQIDRSLS 213 (366)
Q Consensus 134 d~~~~~~~l~ra~~~G~~ai~vtvd~p~~g~r~~d~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~ 213 (366)
+++.+.+.++++.+.||+++-+.+... ....
T Consensus 198 ~~e~~~~~a~~~~~~Gf~~vKik~g~~-------------------------------------------------~~~d 228 (441)
T 2hxt_A 198 SDEKLVRLAKEAVADGFRTIKLKVGAN-------------------------------------------------VQDD 228 (441)
T ss_dssp CHHHHHHHHHHHHHTTCSEEEEECCSC-------------------------------------------------HHHH
T ss_pred CHHHHHHHHHHHHHcCCCEEEEccCCC-------------------------------------------------HHHH
Confidence 677777888888899999988765421 0123
Q ss_pred HHHHHHHHHhc--CCCEEEEec--cCHHH--------HHcCCcEEEEcCCCccCCCCCcchHHHHHHHHHHcCCCceEEE
Q 017781 214 WKDVKWLQTIT--KLPILVKGV--LTAED--------VQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFL 281 (366)
Q Consensus 214 ~~~i~~lr~~~--~~pv~vK~v--~~~~d--------~~aGad~I~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~i~vi~ 281 (366)
.+.++.+|+.+ +.+|.+..- .+.++ .+.|++.|- +. ..+..++.+.++++.+. .+||++
T Consensus 229 ~e~v~avR~a~G~d~~l~vDan~~~~~~~a~~~~~~l~~~~i~~iE-------qP-~~~~d~~~~~~l~~~~~-~iPIa~ 299 (441)
T 2hxt_A 229 IRRCRLARAAIGPDIAMAVDANQRWDVGPAIDWMRQLAEFDIAWIE-------EP-TSPDDVLGHAAIRQGIT-PVPVST 299 (441)
T ss_dssp HHHHHHHHHHHCSSSEEEEECTTCCCHHHHHHHHHTTGGGCCSCEE-------CC-SCTTCHHHHHHHHHHHT-TSCEEE
T ss_pred HHHHHHHHHhcCCCCeEEEECCCCCCHHHHHHHHHHHHhcCCCeee-------CC-CCHHHHHHHHHHHhhCC-CCCEEE
Confidence 45567777765 466666532 34444 456777663 11 12235777888887762 599999
Q ss_pred ecCCCCHHHHHHHHHhC-cCEEEec
Q 017781 282 DGGVRRGTDVFKALALG-ASGIFIG 305 (366)
Q Consensus 282 ~GGI~~~~dv~kalalG-Ad~V~ig 305 (366)
++.+.+..++.+.+..| +|.|++-
T Consensus 300 dE~~~~~~~~~~~i~~~~~d~v~ik 324 (441)
T 2hxt_A 300 GEHTQNRVVFKQLLQAGAVDLIQID 324 (441)
T ss_dssp CTTCCSHHHHHHHHHHTCCSEECCC
T ss_pred eCCcCCHHHHHHHHHcCCCCEEEeC
Confidence 99999999999999988 7999885
|
| >3ugv_A Enolase; enzyme function initiative, EFI, lyase; 2.30A {Alpha proteobacterium BAL199} | Back alignment and structure |
|---|
Probab=93.99 E-value=0.36 Score=46.93 Aligned_cols=86 Identities=10% Similarity=0.081 Sum_probs=60.4
Q ss_pred CHHHHHHHHHhc--CCCEEEEec--cCHHH--------HHcCCcEEEEcCCCccCCCCCcchHHHHHHHHHHcCCCceEE
Q 017781 213 SWKDVKWLQTIT--KLPILVKGV--LTAED--------VQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVF 280 (366)
Q Consensus 213 ~~~~i~~lr~~~--~~pv~vK~v--~~~~d--------~~aGad~I~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~i~vi 280 (366)
+.+.++.+|+.+ +.++.+..- .+.++ .+.|+++|- +. ..+..++.+.++++.+ .+||+
T Consensus 205 d~~~v~avR~a~G~~~~l~vDaN~~~~~~~A~~~~~~l~~~~i~~iE-------qP-~~~~d~~~~~~l~~~~--~iPIa 274 (390)
T 3ugv_A 205 DIETAEAVWDAVGRDTALMVDFNQGLDMAEAMHRTRQIDDLGLEWIE-------EP-VVYDNFDGYAQLRHDL--KTPLM 274 (390)
T ss_dssp HHHHHHHHHHHHCTTSEEEEECTTCCCHHHHHHHHHHHTTSCCSEEE-------CC-SCTTCHHHHHHHHHHC--SSCEE
T ss_pred HHHHHHHHHHHhCCCCEEEEECCCCCCHHHHHHHHHHHHhhCCCEEE-------CC-CCcccHHHHHHHHHhc--CCCEE
Confidence 345577777765 456666632 34443 455677664 11 1223577888888877 79999
Q ss_pred EecCCCCHHHHHHHHHhC-cCEEEecHHH
Q 017781 281 LDGGVRRGTDVFKALALG-ASGIFIGRPV 308 (366)
Q Consensus 281 ~~GGI~~~~dv~kalalG-Ad~V~igr~~ 308 (366)
++.-+.+..|+.+++..| +|.|++--..
T Consensus 275 ~dE~~~~~~~~~~~i~~~a~d~v~ik~~~ 303 (390)
T 3ugv_A 275 IGENFYGPREMHQALQAGACDLVMPDFMR 303 (390)
T ss_dssp ECTTCCSHHHHHHHHHTTCCSEECCBHHH
T ss_pred eCCCcCCHHHHHHHHHcCCCCEEEeCccc
Confidence 999999999999999987 7999887543
|
| >3ldv_A Orotidine 5'-phosphate decarboxylase; structural genomics, infectious diseases; 1.77A {Vibrio cholerae o1 biovar el tor} PDB: 3uwq_A* | Back alignment and structure |
|---|
Probab=93.98 E-value=0.081 Score=48.62 Aligned_cols=73 Identities=22% Similarity=0.368 Sum_probs=48.9
Q ss_pred HHcCCcEEEEcCCCccCCCCCcchHHHHHHHHHHcCCCceEEEecCCCCH-HH---------HHHHHHhCcCEEEecHHH
Q 017781 239 VQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRG-TD---------VFKALALGASGIFIGRPV 308 (366)
Q Consensus 239 ~~aGad~I~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~i~vi~~GGI~~~-~d---------v~kalalGAd~V~igr~~ 308 (366)
.++|+|++++|. ..+..+++.++.+. ++++.||+-. .+ ..+++..|||.+.+||++
T Consensus 172 ~~aG~~GvV~sa-------------~e~~~iR~~~g~~f-l~VtPGIr~qg~~~~dQ~Rv~t~~~a~~aGad~iVvGr~I 237 (255)
T 3ldv_A 172 KNAGLDGVVCSA-------------QEASLLKQHLGREF-KLVTPGIRPAGSEQGDQRRIMTPAQAIASGSDYLVIGRPI 237 (255)
T ss_dssp HHTTCSEEECCH-------------HHHHHHHHHHCTTS-EEEEECCCCTTSTTSSCSSSCCHHHHHHTTCSEEEECHHH
T ss_pred HHcCCCEEEECH-------------HHHHHHHHhcCCCc-EEEeCCcccCcCCccceeccCCHHHHHHcCCCEEEECHHH
Confidence 578999998753 23556666665444 6788899853 23 567889999999999998
Q ss_pred HHHhhhcCHHHHHHHHHHHHHHH
Q 017781 309 VYSLAAEGEKGVRRVLEMLREEF 331 (366)
Q Consensus 309 l~~l~~~G~~gv~~~~~~l~~el 331 (366)
..+ ..+ ...++.+++|+
T Consensus 238 ~~a---~dp---~~a~~~i~~ei 254 (255)
T 3ldv_A 238 TQA---AHP---EVVLEEINSSL 254 (255)
T ss_dssp HTC---SCH---HHHHHHHHHHC
T ss_pred hCC---CCH---HHHHHHHHHhh
Confidence 643 122 23455565554
|
| >2ps2_A Putative mandelate racemase/muconate lactonizing enzyme; structural genomics, NYSGXRC, target 9440A, enolase superfamily, PSI-2; 1.80A {Aspergillus oryzae RIB40} | Back alignment and structure |
|---|
Probab=93.95 E-value=0.37 Score=46.27 Aligned_cols=44 Identities=25% Similarity=0.231 Sum_probs=38.2
Q ss_pred hHHHHHHHHHHcCCCceEEEecCCCCHHHHHHHHHhC-cCEEEecHH
Q 017781 262 TIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALG-ASGIFIGRP 307 (366)
Q Consensus 262 ~~~~l~~i~~~~~~~i~vi~~GGI~~~~dv~kalalG-Ad~V~igr~ 307 (366)
.++.+.++++.+ ++||++++.+.+..|+.+++..| +|.|++--.
T Consensus 227 ~~~~~~~l~~~~--~iPI~~dE~~~~~~~~~~~i~~~~~d~v~ik~~ 271 (371)
T 2ps2_A 227 TWRECISLRRKT--DIPIIYDELATNEMSIVKILADDAAEGIDLKIS 271 (371)
T ss_dssp SHHHHHHHHTTC--CSCEEESTTCCSHHHHHHHHHHTCCSEEEEEHH
T ss_pred CHHHHHHHHhhC--CCCEEeCCCcCCHHHHHHHHHhCCCCEEEechh
Confidence 677788887766 79999999999999999999987 799999643
|
| >4e5t_A Mandelate racemase / muconate lactonizing enzyme, terminal domain protein; aldolase, structural genomics, biology; 2.90A {Labrenzia alexandrii} | Back alignment and structure |
|---|
Probab=93.95 E-value=0.28 Score=47.91 Aligned_cols=128 Identities=19% Similarity=0.133 Sum_probs=87.2
Q ss_pred CCHHHHHHHHHHHHHcCCCEEEEecCCCCCcchhHHHhhhcCCCCccccccccccccCCCccccchhhHHHhhhccCCCC
Q 017781 133 KDRNVVAQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLTLKNFQGLDLGKMDEANDSGLAAYVAGQIDRSL 212 (366)
Q Consensus 133 ~d~~~~~~~l~ra~~~G~~ai~vtvd~p~~g~r~~d~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~ 212 (366)
.+++.+.+.++++.+.|++++-+.+..+..+. .+. .+ . . .+...
T Consensus 150 ~~~e~~~~~a~~~~~~G~~~~KlK~g~~~~~~------~g~-~~----------------------~-~------~~~~~ 193 (404)
T 4e5t_A 150 NDADMAAEAAAKAVDQGFTAVKFDPAGAYTIY------DGH-QP----------------------S-L------EDLER 193 (404)
T ss_dssp TCHHHHHHHHHHHHHHTCSEEEECCSCCCBTT------CSB-CC----------------------C-H------HHHHH
T ss_pred CCHHHHHHHHHHHHHcCCCEEeeCCCCCCccc------ccc-cc----------------------c-H------HHHHH
Confidence 36677777777777889999988765432110 000 00 0 0 01122
Q ss_pred CHHHHHHHHHhc--CCCEEEEec--cCHHH--------HHcCCcEEEEcCCCccCCCCCcchHHHHHHHHHHcCCCceEE
Q 017781 213 SWKDVKWLQTIT--KLPILVKGV--LTAED--------VQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVF 280 (366)
Q Consensus 213 ~~~~i~~lr~~~--~~pv~vK~v--~~~~d--------~~aGad~I~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~i~vi 280 (366)
+.+.++.+|+.+ +.+|.+..- .+.++ .+.|+++|-- . ..+..++.+.++++.+ .+||+
T Consensus 194 d~~~v~avR~a~G~d~~l~vDan~~~~~~~A~~~~~~l~~~~i~~iEe-------P-~~~~~~~~~~~l~~~~--~iPIa 263 (404)
T 4e5t_A 194 SEAFCKQIRAAVGTKADLLFGTHGQFTVSGAKRLARRLEAYDPLWFEE-------P-IPPEKPEDMAEVARYT--SIPVA 263 (404)
T ss_dssp HHHHHHHHHHHHGGGSEEEECCCSCBCHHHHHHHHHHHGGGCCSEEEC-------C-SCTTCHHHHHHHHHHC--SSCEE
T ss_pred HHHHHHHHHHHcCCCCeEEEeCCCCcCHHHHHHHHHHHhhcCCcEEEC-------C-CCcccHHHHHHHHhhC--CCCEE
Confidence 456788999887 578888743 45554 5678888851 1 1223577888888887 79999
Q ss_pred EecCCCCHHHHHHHHHhC-cCEEEecH
Q 017781 281 LDGGVRRGTDVFKALALG-ASGIFIGR 306 (366)
Q Consensus 281 ~~GGI~~~~dv~kalalG-Ad~V~igr 306 (366)
+++.+.+..|+.+++..| +|.|++--
T Consensus 264 ~dE~~~~~~~~~~~i~~~a~d~v~~d~ 290 (404)
T 4e5t_A 264 TGERLCTKYEFSRVLETGAASILQMNL 290 (404)
T ss_dssp ECTTCCHHHHHHHHHHHTCCSEECCCT
T ss_pred eCCCcCCHHHHHHHHHhCCCCEEecCc
Confidence 999999999999999988 79998863
|
| >3bjs_A Mandelate racemase/muconate lactonizing enzyme; enolase, structural genomics, PSI-2, protein struc initiative; 2.70A {Polaromonas SP} | Back alignment and structure |
|---|
Probab=93.94 E-value=0.17 Score=49.89 Aligned_cols=114 Identities=16% Similarity=0.189 Sum_probs=79.0
Q ss_pred CCH-HHHHHHHHHHHHcCCCEEEEecCCCCCcchhHHHhhhcCCCCccccccccccccCCCccccchhhHHHhhhccCCC
Q 017781 133 KDR-NVVAQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLTLKNFQGLDLGKMDEANDSGLAAYVAGQIDRS 211 (366)
Q Consensus 133 ~d~-~~~~~~l~ra~~~G~~ai~vtvd~p~~g~r~~d~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~ 211 (366)
.++ +.+.+.++++.+.|++++-+.+... ..
T Consensus 183 ~~~~e~~~~~a~~~~~~Gf~~vKik~g~~-------------------------------------------------~~ 213 (428)
T 3bjs_A 183 YQPKESLAEEAQEYIARGYKALKLRIGDA-------------------------------------------------AR 213 (428)
T ss_dssp SCCHHHHHHHHHHHHHHTCSEEEEECCSC-------------------------------------------------HH
T ss_pred CChHHHHHHHHHHHHHCCCCEEEECCCCC-------------------------------------------------HH
Confidence 456 7777777888888999987754320 01
Q ss_pred CCHHHHHHHHHhc--CCCEEEEec--cCHHH--------HHcCCcEEEEcCCCccCCCCCcchHHHHHHHHHHcCCC-ce
Q 017781 212 LSWKDVKWLQTIT--KLPILVKGV--LTAED--------VQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGR-IP 278 (366)
Q Consensus 212 ~~~~~i~~lr~~~--~~pv~vK~v--~~~~d--------~~aGad~I~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~-i~ 278 (366)
...+.++.+|+.+ +.+|.+..- .+.++ .+.|++.|- +. ..+..++.+.++++.+ . +|
T Consensus 214 ~d~e~v~avR~avG~d~~l~vDan~~~~~~eai~~~~~L~~~~i~~iE-------qP-~~~~d~~~~~~l~~~~--~~iP 283 (428)
T 3bjs_A 214 VDIERVRHVRKVLGDEVDILTDANTAYTMADARRVLPVLAEIQAGWLE-------EP-FACNDFASYREVAKIT--PLVP 283 (428)
T ss_dssp HHHHHHHHHHHHHCTTSEEEEECTTCCCHHHHHHHHHHHHHTTCSCEE-------CC-SCTTCHHHHHHHTTTC--SSSC
T ss_pred HHHHHHHHHHHhcCCCCEEEEECCCCCCHHHHHHHHHHHHhcCCCEEE-------CC-CCccCHHHHHHHHHhC--CCCc
Confidence 2345677777765 467777632 34444 567777764 11 1223577777777766 6 99
Q ss_pred EEEecCCCCHHHHHHHHHhC-cCEEEec
Q 017781 279 VFLDGGVRRGTDVFKALALG-ASGIFIG 305 (366)
Q Consensus 279 vi~~GGI~~~~dv~kalalG-Ad~V~ig 305 (366)
|++++.+.+..++.+++..| +|.|++-
T Consensus 284 Ia~dE~~~~~~~~~~~i~~~~~d~v~ik 311 (428)
T 3bjs_A 284 IAAGENHYTRFEFGQMLDAGAVQVWQPD 311 (428)
T ss_dssp EEECTTCCSHHHHHHHHTTCCEEEECCB
T ss_pred EEcCCCcCCHHHHHHHHHhCCCCEEEeC
Confidence 99999999999999999987 7888884
|
| >2poz_A Putative dehydratase; octamer, structural genomics, P protein structure initiative, NEW YORK SGX research center structural genomics, nysgxrc; 2.04A {Mesorhizobium loti} | Back alignment and structure |
|---|
Probab=93.93 E-value=0.4 Score=46.43 Aligned_cols=132 Identities=17% Similarity=0.175 Sum_probs=87.0
Q ss_pred CCHHHHHHHHHHHHHcCCCEEEEecCCCCCcchhHHHhhhcCCCCccccccccccccCCCccccchhhHHHhhhccCCCC
Q 017781 133 KDRNVVAQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLTLKNFQGLDLGKMDEANDSGLAAYVAGQIDRSL 212 (366)
Q Consensus 133 ~d~~~~~~~l~ra~~~G~~ai~vtvd~p~~g~r~~d~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~ 212 (366)
.+.+.+.+.++++.+.|++++-+.+.+...+.. .+++. + .++. ..+...
T Consensus 136 ~~~~~~~~~a~~~~~~Gf~~vKik~g~~~~g~~----~~~~~-~-------------------gg~~-------~~~~~~ 184 (392)
T 2poz_A 136 DTPDEFARAVERPLKEGYGALKFYPLAQRVGSA----LQHVT-R-------------------RSMS-------AEAIEL 184 (392)
T ss_dssp CSHHHHHHHTHHHHHTTCSEEEECCCCEEETTE----EECCB-T-------------------TBCC-------HHHHHH
T ss_pred CCHHHHHHHHHHHHHcCCCEEEEeccccccccc----ccccc-c-------------------CCcc-------hhhHHH
Confidence 467777777888889999999887654221100 00000 0 0000 001123
Q ss_pred CHHHHHHHHHhc--CCCEEEEec--cCHHH--------HHcCCcEEEEcCCCccCCCCCcchHHHHHHHHHHcCCCceEE
Q 017781 213 SWKDVKWLQTIT--KLPILVKGV--LTAED--------VQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVF 280 (366)
Q Consensus 213 ~~~~i~~lr~~~--~~pv~vK~v--~~~~d--------~~aGad~I~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~i~vi 280 (366)
..+.++.+|+.+ +++|.+..- .+.++ .+.|+++|-- ...+..++.+.++++.+ ++||+
T Consensus 185 ~~e~v~avr~a~G~d~~l~vD~n~~~~~~~a~~~~~~l~~~~i~~iE~--------P~~~~~~~~~~~l~~~~--~ipIa 254 (392)
T 2poz_A 185 AYRRVKAVRDAAGPEIELMVDLSGGLTTDETIRFCRKIGELDICFVEE--------PCDPFDNGALKVISEQI--PLPIA 254 (392)
T ss_dssp HHHHHHHHHHHHCTTSEEEEECTTCSCHHHHHHHHHHHGGGCEEEEEC--------CSCTTCHHHHHHHHHHC--SSCEE
T ss_pred HHHHHHHHHHhcCCCCEEEEECCCCCCHHHHHHHHHHHHhcCCCEEEC--------CCCcccHHHHHHHHhhC--CCCEE
Confidence 456788999877 578888743 45555 5667776641 11234678888888887 79999
Q ss_pred EecCCCCHHHHHHHHHhC-cCEEEec
Q 017781 281 LDGGVRRGTDVFKALALG-ASGIFIG 305 (366)
Q Consensus 281 ~~GGI~~~~dv~kalalG-Ad~V~ig 305 (366)
+++.+.+..++.+++..| +|.|++-
T Consensus 255 ~dE~~~~~~~~~~~i~~~~~d~v~ik 280 (392)
T 2poz_A 255 VGERVYTRFGFRKIFELQACGIIQPD 280 (392)
T ss_dssp ECTTCCHHHHHHHHHTTTCCSEECCC
T ss_pred ecCCcCCHHHHHHHHHcCCCCEEecC
Confidence 999999999999999987 8999884
|
| >3lye_A Oxaloacetate acetyl hydrolase; (alpha/beta)8 barrel; 1.30A {Cryphonectria parasitica} PDB: 3m0j_A* 3m0k_A | Back alignment and structure |
|---|
Probab=93.87 E-value=1.2 Score=41.96 Aligned_cols=63 Identities=17% Similarity=0.122 Sum_probs=41.1
Q ss_pred HHcCCcEEEEcCCCccCCCCCcchHHHHHHHHHHcCCCceEEE---ecCCCCHHHHHHHHHhCcCEEEecHHHHHH
Q 017781 239 VQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFL---DGGVRRGTDVFKALALGASGIFIGRPVVYS 311 (366)
Q Consensus 239 ~~aGad~I~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~i~vi~---~GGI~~~~dv~kalalGAd~V~igr~~l~~ 311 (366)
.++|||.|.+-+ +.+.+.+.++.+.++ .+|+.+ .||-.-.-.+.+.-++|.+.|..+...+.+
T Consensus 188 ~eAGAD~ifi~~---------~~~~~~~~~i~~~~~-~~Pv~~n~~~~g~~p~~t~~eL~~lGv~~v~~~~~~~ra 253 (307)
T 3lye_A 188 RDEGADVGLLEG---------FRSKEQAAAAVAALA-PWPLLLNSVENGHSPLITVEEAKAMGFRIMIFSFATLAP 253 (307)
T ss_dssp HHTTCSEEEECC---------CSCHHHHHHHHHHHT-TSCBEEEEETTSSSCCCCHHHHHHHTCSEEEEETTTHHH
T ss_pred HHCCCCEEEecC---------CCCHHHHHHHHHHcc-CCceeEEeecCCCCCCCCHHHHHHcCCeEEEEChHHHHH
Confidence 899999998732 346677888888874 367654 344221122344445799999888766554
|
| >3q45_A Mandelate racemase/muconate lactonizing enzyme FA possible chloromuconate cycloisomerase...; (beta/alpha)8-barrel; 3.00A {Cytophaga hutchinsonii} PDB: 3q4d_A | Back alignment and structure |
|---|
Probab=93.84 E-value=0.38 Score=46.24 Aligned_cols=115 Identities=13% Similarity=0.215 Sum_probs=78.3
Q ss_pred CCHHHHHHHHHHHHHcCCCEEEEecCCCCCcchhHHHhhhcCCCCccccccccccccCCCccccchhhHHHhhhccCCCC
Q 017781 133 KDRNVVAQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLTLKNFQGLDLGKMDEANDSGLAAYVAGQIDRSL 212 (366)
Q Consensus 133 ~d~~~~~~~l~ra~~~G~~ai~vtvd~p~~g~r~~d~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~ 212 (366)
.+++.+.+.++++.+.|++++=+.++.. +..
T Consensus 139 ~~~e~~~~~a~~~~~~G~~~~K~KvG~~-------------------------------------------------~~~ 169 (368)
T 3q45_A 139 DEPHKMAADAVQIKKNGFEIIKVKVGGS-------------------------------------------------KEL 169 (368)
T ss_dssp CCHHHHHHHHHHHHHTTCSEEEEECCSC-------------------------------------------------HHH
T ss_pred CCHHHHHHHHHHHHHcCCCeEEEEecCC-------------------------------------------------HHH
Confidence 5677777777777788999987655421 112
Q ss_pred CHHHHHHHHHhc--CCCEEEEec--cCHHH--------HHcCCcEEEEcCCCccCCCCCcchHHHHHHHHHHcCCCceEE
Q 017781 213 SWKDVKWLQTIT--KLPILVKGV--LTAED--------VQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVF 280 (366)
Q Consensus 213 ~~~~i~~lr~~~--~~pv~vK~v--~~~~d--------~~aGad~I~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~i~vi 280 (366)
+.+.++.+|+.+ +.++.+..- .+.++ .+.|+++|- + ...+..++.+.++++.. .+||+
T Consensus 170 d~~~v~avR~~~g~~~~l~vDaN~~~~~~~A~~~~~~l~~~~i~~iE-------q-P~~~~~~~~~~~l~~~~--~iPIa 239 (368)
T 3q45_A 170 DVERIRMIREAAGDSITLRIDANQGWSVETAIETLTLLEPYNIQHCE-------E-PVSRNLYTALPKIRQAC--RIPIM 239 (368)
T ss_dssp HHHHHHHHHHHHCSSSEEEEECTTCBCHHHHHHHHHHHGGGCCSCEE-------C-CBCGGGGGGHHHHHHTC--SSCEE
T ss_pred HHHHHHHHHHHhCCCCeEEEECCCCCChHHHHHHHHHHhhcCCCEEE-------C-CCChhHHHHHHHHHhhC--CCCEE
Confidence 345677777776 466666632 34443 456676664 1 11223456677787766 79999
Q ss_pred EecCCCCHHHHHHHHHhC-cCEEEecH
Q 017781 281 LDGGVRRGTDVFKALALG-ASGIFIGR 306 (366)
Q Consensus 281 ~~GGI~~~~dv~kalalG-Ad~V~igr 306 (366)
++..+.+..|+.+++..| +|.|++--
T Consensus 240 ~dE~~~~~~~~~~~~~~~~~d~v~~k~ 266 (368)
T 3q45_A 240 ADESCCNSFDAERLIQIQACDSFNLKL 266 (368)
T ss_dssp ESTTCCSHHHHHHHHHTTCCSEEEECT
T ss_pred EcCCcCCHHHHHHHHHcCCCCeEEech
Confidence 999999999999999987 79998864
|
| >3ru6_A Orotidine 5'-phosphate decarboxylase; structural genomics, center for structural genomics of infec diseases (csgid), TIM-barrel; 1.80A {Campylobacter jejuni subsp} | Back alignment and structure |
|---|
Probab=93.83 E-value=0.076 Score=49.99 Aligned_cols=58 Identities=21% Similarity=0.260 Sum_probs=42.2
Q ss_pred HHcCCcEEEEcCCCccCCCCCcchHHHHHHHHHHcCCCceEEEecCCCCHH----------HHHHHHHhCcCEEEecHHH
Q 017781 239 VQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGT----------DVFKALALGASGIFIGRPV 308 (366)
Q Consensus 239 ~~aGad~I~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~i~vi~~GGI~~~~----------dv~kalalGAd~V~igr~~ 308 (366)
.++|+|++++|.+ . +..+++.++.+ .+++++||+-.. .+.+++..|||.+.+||++
T Consensus 168 ~~~G~dGvV~s~~----------E---~~~IR~~~~~~-fl~VTPGIr~qG~~~~DQ~Rv~t~~~a~~aGAd~iVvGr~I 233 (303)
T 3ru6_A 168 YENGLDGMVCSVF----------E---SKKIKEHTSSN-FLTLTPGIRPFGETNDDQKRVANLAMARENLSDYIVVGRPI 233 (303)
T ss_dssp HHTTCSEEECCTT----------T---HHHHHHHSCTT-SEEEECCCCTTC--------CCSHHHHHHTTCSEEEECHHH
T ss_pred HHcCCCEEEECHH----------H---HHHHHHhCCCc-cEEECCCcCcccCCcccccccCCHHHHHHcCCCEEEEChHH
Confidence 6789999987442 1 34666666433 488899998332 3667788999999999997
Q ss_pred HH
Q 017781 309 VY 310 (366)
Q Consensus 309 l~ 310 (366)
..
T Consensus 234 ~~ 235 (303)
T 3ru6_A 234 YK 235 (303)
T ss_dssp HT
T ss_pred hC
Confidence 64
|
| >3mqt_A Mandelate racemase/muconate lactonizing protein; PSI-II, NYSGXRC, muconate lactonizing EN structural genomics, protein structure initiative; 2.10A {Shewanella pealeana} | Back alignment and structure |
|---|
Probab=93.76 E-value=0.39 Score=46.70 Aligned_cols=84 Identities=7% Similarity=-0.058 Sum_probs=63.5
Q ss_pred CHHHHHHHHHhc--CCCEEEEec--c-CHHH--------HHcCCcEEEEcCCCccCCCCCcchHHHHHHHHHHcCCCceE
Q 017781 213 SWKDVKWLQTIT--KLPILVKGV--L-TAED--------VQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPV 279 (366)
Q Consensus 213 ~~~~i~~lr~~~--~~pv~vK~v--~-~~~d--------~~aGad~I~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~i~v 279 (366)
+.+.++.+|+.+ +.+|.+..- . +.++ .+.|+++|- + ...+..++.+.++++.+ .+||
T Consensus 186 d~~~v~avR~a~G~d~~l~vDan~~~~~~~~A~~~~~~L~~~~i~~iE-------e-P~~~~~~~~~~~l~~~~--~iPI 255 (394)
T 3mqt_A 186 IVAYLRELREVIGWDMDMMVDCLYRWTDWQKARWTFRQLEDIDLYFIE-------A-CLQHDDLIGHQKLAAAI--NTRL 255 (394)
T ss_dssp HHHHHHHHHHHHCSSSEEEEECTTCCSCHHHHHHHHHHTGGGCCSEEE-------S-CSCTTCHHHHHHHHHHS--SSEE
T ss_pred HHHHHHHHHHHhCCCCeEEEECCCCCCCHHHHHHHHHHHhhcCCeEEE-------C-CCCcccHHHHHHHHhhC--CCCE
Confidence 456788888886 578888743 3 5554 667888884 1 11223577888888887 7999
Q ss_pred EEecCCCCHHHHHHHHHhC-cCEEEecH
Q 017781 280 FLDGGVRRGTDVFKALALG-ASGIFIGR 306 (366)
Q Consensus 280 i~~GGI~~~~dv~kalalG-Ad~V~igr 306 (366)
++++.+.+..|+.+++..| +|.|++--
T Consensus 256 a~dE~~~~~~~~~~~l~~~~~d~v~~k~ 283 (394)
T 3mqt_A 256 CGAEMSTTRFEAQEWLEKTGISVVQSDY 283 (394)
T ss_dssp EECTTCCHHHHHHHHHHHHCCSEECCCT
T ss_pred EeCCCcCCHHHHHHHHHcCCCCeEecCc
Confidence 9999999999999999987 89999853
|
| >3rr1_A GALD, putative D-galactonate dehydratase; enolase, magnesium binding site, lyase; 1.95A {Ralstonia pickettii} PDB: 3rra_A | Back alignment and structure |
|---|
Probab=93.76 E-value=0.24 Score=48.39 Aligned_cols=125 Identities=11% Similarity=0.011 Sum_probs=85.3
Q ss_pred cCCHHHHHHHHHHHHHcCCCEEEEecCCCCCcchhHHHhhhcCCCCccccccccccccCCCccccchhhHHHhhhccCCC
Q 017781 132 YKDRNVVAQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLTLKNFQGLDLGKMDEANDSGLAAYVAGQIDRS 211 (366)
Q Consensus 132 ~~d~~~~~~~l~ra~~~G~~ai~vtvd~p~~g~r~~d~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~ 211 (366)
..+++.+.+.++++.+.|++++=+ +..+..+.. . . . .+..
T Consensus 123 ~~~~e~~~~~a~~~~~~G~~~iKl-~G~~~~~~~----------~----------------------~-~------~~~~ 162 (405)
T 3rr1_A 123 GDRPADVIAGMKALQAGGFDHFKL-NGCEEMGII----------D----------------------T-S------RAVD 162 (405)
T ss_dssp CSSHHHHHHHHHHHHHTTCCEEEE-ESCCSSSCB----------C----------------------S-H------HHHH
T ss_pred CCCHHHHHHHHHHHHHcCCCEEEE-ecCCccccc----------c----------------------c-c------hhHH
Confidence 356788888888888899999877 554321000 0 0 0 0112
Q ss_pred CCHHHHHHHHHhc--CCCEEEEec--cCHHH--------HHcCCcEEEEcCCCccCCCCCcchHHHHHHHHHHcCCCceE
Q 017781 212 LSWKDVKWLQTIT--KLPILVKGV--LTAED--------VQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPV 279 (366)
Q Consensus 212 ~~~~~i~~lr~~~--~~pv~vK~v--~~~~d--------~~aGad~I~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~i~v 279 (366)
.+.+.++.+|+.+ +.+|.+..- .+.++ .+.|+++|-- ...+..++.+.++++.+ .+||
T Consensus 163 ~d~e~v~avR~avG~d~~L~vDaN~~~~~~~A~~~~~~L~~~~i~~iEe--------P~~~~d~~~~~~l~~~~--~iPI 232 (405)
T 3rr1_A 163 AAVARVAEIRSAFGNTVEFGLDFHGRVSAPMAKVLIKELEPYRPLFIEE--------PVLAEQAETYARLAAHT--HLPI 232 (405)
T ss_dssp HHHHHHHHHHHTTGGGSEEEEECCSCBCHHHHHHHHHHHGGGCCSCEEC--------SSCCSSTHHHHHHHTTC--SSCE
T ss_pred HHHHHHHHHHHHhCCCceEEEECCCCCCHHHHHHHHHHHHhcCCCEEEC--------CCCcccHHHHHHHHhcC--CCCE
Confidence 2456788889887 578888743 45554 5677777741 01223567778887766 7999
Q ss_pred EEecCCCCHHHHHHHHHhC-cCEEEecH
Q 017781 280 FLDGGVRRGTDVFKALALG-ASGIFIGR 306 (366)
Q Consensus 280 i~~GGI~~~~dv~kalalG-Ad~V~igr 306 (366)
++++.+.+..|+.+++..| +|.|++--
T Consensus 233 a~dE~i~~~~~~~~~l~~~a~d~v~~d~ 260 (405)
T 3rr1_A 233 AAGERMFSRFDFKRVLEAGGVSILQPDL 260 (405)
T ss_dssp EECTTCCSHHHHHHHHHHCCCSEECCBT
T ss_pred EecCCcCCHHHHHHHHHHhCCCeEEECh
Confidence 9999999999999999987 89999853
|
| >1pii_A N-(5'phosphoribosyl)anthranilate isomerase; bifunctional(isomerase and synthase); 2.00A {Escherichia coli} SCOP: c.1.2.4 c.1.2.4 PDB: 1jcm_P* 2kzh_A | Back alignment and structure |
|---|
Probab=93.71 E-value=0.27 Score=48.84 Aligned_cols=85 Identities=21% Similarity=0.212 Sum_probs=62.3
Q ss_pred CHHHHHHHHHhcCCCEEEEecc-CHHH----HHcCCcEEEEcCCCccCCCCCcchHHHHHHHHHHcCCCceEEEecCCCC
Q 017781 213 SWKDVKWLQTITKLPILVKGVL-TAED----VQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRR 287 (366)
Q Consensus 213 ~~~~i~~lr~~~~~pv~vK~v~-~~~d----~~aGad~I~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~i~vi~~GGI~~ 287 (366)
+.++++.+|+.+++||+-|.-. +.-. ..+|||+|-+...- + ....+..|.+..+.+ .+.++++ +++
T Consensus 96 s~~dL~~vr~~v~lPvLrKDFI~d~~Qi~ea~~~GAD~ILLi~a~---l--~~~~l~~l~~~a~~l--gm~~LvE--vh~ 166 (452)
T 1pii_A 96 SFNFLPIVSQIAPQPILCKDFIIDPYQIYLARYYQADACLLMLSV---L--DDDQYRQLAAVAHSL--EMGVLTE--VSN 166 (452)
T ss_dssp CTTHHHHHHHHCCSCEEEESCCCSHHHHHHHHHTTCSEEEEETTT---C--CHHHHHHHHHHHHHT--TCEEEEE--ECS
T ss_pred CHHHHHHHHHhcCCCeEEEeccCCHHHHHHHHHcCCCEEEEEccc---C--CHHHHHHHHHHHHHc--CCeEEEE--eCC
Confidence 4578999999999999999643 2222 89999999875431 1 123444444445555 6777776 899
Q ss_pred HHHHHHHHHhCcCEEEecH
Q 017781 288 GTDVFKALALGASGIFIGR 306 (366)
Q Consensus 288 ~~dv~kalalGAd~V~igr 306 (366)
.+++..|+.+||+.|++-.
T Consensus 167 ~eE~~~A~~lga~iIGinn 185 (452)
T 1pii_A 167 EEEQERAIALGAKVVGINN 185 (452)
T ss_dssp HHHHHHHHHTTCSEEEEES
T ss_pred HHHHHHHHHCCCCEEEEeC
Confidence 9999999999999999864
|
| >2gl5_A Putative dehydratase protein; structural genomics, protein structure initiati nysgxrc; 1.60A {Salmonella typhimurium} SCOP: c.1.11.2 d.54.1.1 PDB: 4e6m_A* | Back alignment and structure |
|---|
Probab=93.65 E-value=0.36 Score=47.01 Aligned_cols=83 Identities=11% Similarity=-0.031 Sum_probs=63.9
Q ss_pred CHHHHHHHHHhc--CCCEEEEec--cCHHH--------HHcCCcEEEEcCCCccCCCCCcchHHHHHHHHHHcCCCceEE
Q 017781 213 SWKDVKWLQTIT--KLPILVKGV--LTAED--------VQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVF 280 (366)
Q Consensus 213 ~~~~i~~lr~~~--~~pv~vK~v--~~~~d--------~~aGad~I~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~i~vi 280 (366)
..+.++.+|+.+ +++|.+..- .+.++ .+.|+++|-- ...+..++.+.++++.+ ++||+
T Consensus 204 ~~e~v~avR~a~G~d~~l~vDan~~~~~~~ai~~~~~l~~~~i~~iE~--------P~~~~~~~~~~~l~~~~--~iPIa 273 (410)
T 2gl5_A 204 GEARIAAMREAMGDDADIIVEIHSLLGTNSAIQFAKAIEKYRIFLYEE--------PIHPLNSDNMQKVSRST--TIPIA 273 (410)
T ss_dssp HHHHHHHHHHHHCSSSEEEEECTTCSCHHHHHHHHHHHGGGCEEEEEC--------SSCSSCHHHHHHHHHHC--SSCEE
T ss_pred HHHHHHHHHHhcCCCCEEEEECCCCCCHHHHHHHHHHHHhcCCCeEEC--------CCChhhHHHHHHHHhhC--CCCEE
Confidence 457789999987 588888843 45555 5677777641 01234678888888887 79999
Q ss_pred EecCCCCHHHHHHHHHhC-cCEEEec
Q 017781 281 LDGGVRRGTDVFKALALG-ASGIFIG 305 (366)
Q Consensus 281 ~~GGI~~~~dv~kalalG-Ad~V~ig 305 (366)
+++.+.+..++.+++..| +|.|++-
T Consensus 274 ~dE~~~~~~~~~~~i~~~~~d~v~ik 299 (410)
T 2gl5_A 274 TGERSYTRWGYRELLEKQSIAVAQPD 299 (410)
T ss_dssp ECTTCCTTHHHHHHHHTTCCSEECCC
T ss_pred ecCCcCCHHHHHHHHHcCCCCEEecC
Confidence 999999999999999988 7999884
|
| >3eb2_A Putative dihydrodipicolinate synthetase; lysine biosynthesis, pyruvate, TIM barrel, NYSGXRC, PSI2., structural genomics; HET: PGE; 2.04A {Rhodopseudomonas palustris} SCOP: c.1.10.0 | Back alignment and structure |
|---|
Probab=93.63 E-value=0.046 Score=51.37 Aligned_cols=102 Identities=18% Similarity=0.172 Sum_probs=63.2
Q ss_pred CCCCHHHHHHHHHhcCCCEEEEeccCHHHHHcCCcEEEEcCCCccCCCCCcc-hHHHHHHHHHHcCCCceEEEecCCCCH
Q 017781 210 RSLSWKDVKWLQTITKLPILVKGVLTAEDVQAGAAGIIVSNHGARQLDYVPA-TIMALEEVVKATQGRIPVFLDGGVRRG 288 (366)
Q Consensus 210 ~~~~~~~i~~lr~~~~~pv~vK~v~~~~d~~aGad~I~vs~~gg~~~~~~~~-~~~~l~~i~~~~~~~i~vi~~GGI~~~ 288 (366)
...+++.++++.+.. .+.|+|+|++.++.|....-... ..+++..+++.+++++|||+--|=.+-
T Consensus 20 g~iD~~~l~~lv~~l--------------i~~Gv~gl~v~GttGE~~~Ls~~Er~~v~~~~~~~~~grvpviaGvg~~~t 85 (300)
T 3eb2_A 20 GRVRADVMGRLCDDL--------------IQAGVHGLTPLGSTGEFAYLGTAQREAVVRATIEAAQRRVPVVAGVASTSV 85 (300)
T ss_dssp SCBCHHHHHHHHHHH--------------HHTTCSCBBTTSGGGTGGGCCHHHHHHHHHHHHHHHTTSSCBEEEEEESSH
T ss_pred CCcCHHHHHHHHHHH--------------HHcCCCEEEECccccCccccCHHHHHHHHHHHHHHhCCCCcEEEeCCCCCH
Confidence 345666666555432 56799999988766532211111 234566666677778998875454455
Q ss_pred HHHHH----HHHhCcCEEEecHHHHHHhhhcCHHHHHHHHHHHH
Q 017781 289 TDVFK----ALALGASGIFIGRPVVYSLAAEGEKGVRRVLEMLR 328 (366)
Q Consensus 289 ~dv~k----alalGAd~V~igr~~l~~l~~~G~~gv~~~~~~l~ 328 (366)
.++++ |-.+|||++++-.|+++.. .++++.++++.+.
T Consensus 86 ~~ai~la~~a~~~Gadavlv~~P~y~~~---~~~~l~~~f~~va 126 (300)
T 3eb2_A 86 ADAVAQAKLYEKLGADGILAILEAYFPL---KDAQIESYFRAIA 126 (300)
T ss_dssp HHHHHHHHHHHHHTCSEEEEEECCSSCC---CHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCCEEEEcCCCCCCC---CHHHHHHHHHHHH
Confidence 55443 3458999999999987652 4566555544443
|
| >1mxs_A KDPG aldolase; 2-keto-3-deoxy-6-phosphogluconate aldolase, sulfate, beta-BA lyase; 2.20A {Pseudomonas putida} SCOP: c.1.10.1 | Back alignment and structure |
|---|
Probab=93.60 E-value=0.12 Score=46.60 Aligned_cols=75 Identities=23% Similarity=0.261 Sum_probs=50.0
Q ss_pred HHHHHHHHhcC-CCEEEEeccCHHH----HHcCCcEEEEcCCCccCCCCCcchHHHHHHHHHHcCCCceEEEecCCCCHH
Q 017781 215 KDVKWLQTITK-LPILVKGVLTAED----VQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGT 289 (366)
Q Consensus 215 ~~i~~lr~~~~-~pv~vK~v~~~~d----~~aGad~I~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~i~vi~~GGI~~~~ 289 (366)
+.++.+++.++ +-+....+.+.++ .++|||+|+..+ ...+.+ +.++.. .+++|. |+.|++
T Consensus 66 ~~i~~l~~~~~~~~igagtvl~~d~~~~A~~aGAd~v~~p~----------~d~~v~-~~~~~~--g~~~i~--G~~t~~ 130 (225)
T 1mxs_A 66 KAIQVLREQRPELCVGAGTVLDRSMFAAVEAAGAQFVVTPG----------ITEDIL-EAGVDS--EIPLLP--GISTPS 130 (225)
T ss_dssp HHHHHHHHHCTTSEEEEECCCSHHHHHHHHHHTCSSEECSS----------CCHHHH-HHHHHC--SSCEEC--EECSHH
T ss_pred HHHHHHHHhCcccEEeeCeEeeHHHHHHHHHCCCCEEEeCC----------CCHHHH-HHHHHh--CCCEEE--eeCCHH
Confidence 45777777773 3333334455554 999999996321 122333 333444 466665 499999
Q ss_pred HHHHHHHhCcCEEEe
Q 017781 290 DVFKALALGASGIFI 304 (366)
Q Consensus 290 dv~kalalGAd~V~i 304 (366)
++.+|+.+|||.|.+
T Consensus 131 e~~~A~~~Gad~vk~ 145 (225)
T 1mxs_A 131 EIMMGYALGYRRFKL 145 (225)
T ss_dssp HHHHHHTTTCCEEEE
T ss_pred HHHHHHHCCCCEEEE
Confidence 999999999999999
|
| >3a5f_A Dihydrodipicolinate synthase; TIM barrel, enzyme, amino-acid biosynthesis, cytoplasm, diaminopimelate biosynthesis, lyase; HET: KPI; 1.19A {Clostridium botulinum A} PDB: 3bi8_A* 3ird_A* | Back alignment and structure |
|---|
Probab=93.57 E-value=0.074 Score=49.69 Aligned_cols=86 Identities=16% Similarity=0.274 Sum_probs=56.7
Q ss_pred CCHHHHHHHHHhcCCCEEEEeccCHHHHHcCCcEEEEcCCCccCCCCCcc-hHHHHHHHHHHcCCCceEEEecCCCCHHH
Q 017781 212 LSWKDVKWLQTITKLPILVKGVLTAEDVQAGAAGIIVSNHGARQLDYVPA-TIMALEEVVKATQGRIPVFLDGGVRRGTD 290 (366)
Q Consensus 212 ~~~~~i~~lr~~~~~pv~vK~v~~~~d~~aGad~I~vs~~gg~~~~~~~~-~~~~l~~i~~~~~~~i~vi~~GGI~~~~d 290 (366)
.+++.++++.+.. .+.|+|+|++.++.|....-... ..+++..+++.+.+++|||+--|=.+-.+
T Consensus 19 iD~~~l~~lv~~l--------------i~~Gv~gl~~~GttGE~~~Ls~~Er~~v~~~~~~~~~gr~pvi~Gvg~~~t~~ 84 (291)
T 3a5f_A 19 VDFDKLSELIEWH--------------IKSKTDAIIVCGTTGEATTMTETERKETIKFVIDKVNKRIPVIAGTGSNNTAA 84 (291)
T ss_dssp BCHHHHHHHHHHH--------------HHTTCCEEEESSGGGTGGGSCHHHHHHHHHHHHHHHTTSSCEEEECCCSSHHH
T ss_pred cCHHHHHHHHHHH--------------HHcCCCEEEECccccChhhCCHHHHHHHHHHHHHHhCCCCcEEEeCCcccHHH
Confidence 6676666555432 56799999998876643211221 23456666666777899887666555565
Q ss_pred HHH----HHHhCcCEEEecHHHHHH
Q 017781 291 VFK----ALALGASGIFIGRPVVYS 311 (366)
Q Consensus 291 v~k----alalGAd~V~igr~~l~~ 311 (366)
+++ |-.+|||++++-.|+++.
T Consensus 85 ai~la~~a~~~Gadavlv~~P~y~~ 109 (291)
T 3a5f_A 85 SIAMSKWAESIGVDGLLVITPYYNK 109 (291)
T ss_dssp HHHHHHHHHHTTCSEEEEECCCSSC
T ss_pred HHHHHHHHHhcCCCEEEEcCCCCCC
Confidence 553 334799999999998754
|
| >3go2_A Putative L-alanine-DL-glutamate epimerase; structural genomics, isomerase, PSI-2; 1.70A {Burkholderia xenovorans} PDB: 2oo6_A 3sn0_A 3sn1_A* 3sn4_A* | Back alignment and structure |
|---|
Probab=93.55 E-value=0.86 Score=44.46 Aligned_cols=82 Identities=9% Similarity=-0.037 Sum_probs=64.4
Q ss_pred CHHHHHHHHHhc--CCCEEEEec--cCHHH--------HHcCCcEEEEcCCCccCCCCCcchHHHHHHHHHHcCCCceEE
Q 017781 213 SWKDVKWLQTIT--KLPILVKGV--LTAED--------VQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVF 280 (366)
Q Consensus 213 ~~~~i~~lr~~~--~~pv~vK~v--~~~~d--------~~aGad~I~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~i~vi 280 (366)
..+.++.+|+.+ +.+|.+..- .+.++ .+.|+++|-.- ...++.+.++++.+ .+||+
T Consensus 199 ~~e~v~avR~avG~d~~l~vDaN~~~~~~~A~~~~~~L~~~~i~~iE~P----------~~d~~~~~~l~~~~--~iPIa 266 (409)
T 3go2_A 199 LRAHLEALRDGAGPDVEILLDLNFNAKPEGYLKILRELADFDLFWVEID----------SYSPQGLAYVRNHS--PHPIS 266 (409)
T ss_dssp HHHHHHHHHHHHCTTSEEEEECTTCSCHHHHHHHHHHTTTSCCSEEECC----------CSCHHHHHHHHHTC--SSCEE
T ss_pred HHHHHHHHHHHhCCCCEEEEECCCCCCHHHHHHHHHHHhhcCCeEEEeC----------cCCHHHHHHHHhhC--CCCEE
Confidence 356789999987 578888843 45554 56788888631 13667788888877 79999
Q ss_pred EecCCCCHHHHHHHHHhC-cCEEEecH
Q 017781 281 LDGGVRRGTDVFKALALG-ASGIFIGR 306 (366)
Q Consensus 281 ~~GGI~~~~dv~kalalG-Ad~V~igr 306 (366)
+++.+.+..|+.+++..| +|.|++--
T Consensus 267 ~dE~~~~~~~~~~~i~~~~~d~v~~k~ 293 (409)
T 3go2_A 267 SCETLFGIREFKPFFDANAVDVAIVDT 293 (409)
T ss_dssp ECTTCCHHHHHHHHHHTTCCSEEEECH
T ss_pred eCCCcCCHHHHHHHHHhCCCCEEEeCC
Confidence 999999999999999998 79998864
|
| >4dpp_A DHDPS 2, dihydrodipicolinate synthase 2, chloroplastic; amino-acid biosynthesis, (S)-lysine biosynthesis VIA DAP PAT (beta/alpha)8-barrel; 2.00A {Arabidopsis thaliana} PDB: 4dpq_A* 3tuu_A* | Back alignment and structure |
|---|
Probab=93.53 E-value=0.13 Score=49.66 Aligned_cols=86 Identities=20% Similarity=0.248 Sum_probs=55.4
Q ss_pred HHcCCcEEEEcCCCccCCCCCcc-hHHHHHHHHHHcCCCceEEEecCCCCHHHHHH----HHHhCcCEEEecHHHHHHhh
Q 017781 239 VQAGAAGIIVSNHGARQLDYVPA-TIMALEEVVKATQGRIPVFLDGGVRRGTDVFK----ALALGASGIFIGRPVVYSLA 313 (366)
Q Consensus 239 ~~aGad~I~vs~~gg~~~~~~~~-~~~~l~~i~~~~~~~i~vi~~GGI~~~~dv~k----alalGAd~V~igr~~l~~l~ 313 (366)
.+.|+|+|++.+..|-...-... ..+++..+++.+.+++|||+.-|=.+-.++++ |-.+|||++++-.|+++..
T Consensus 90 i~~Gv~Gl~v~GTTGE~~~Ls~eEr~~vi~~~ve~~~grvpViaGvg~~st~eai~la~~A~~~Gadavlvv~PyY~k~- 168 (360)
T 4dpp_A 90 IQNGAEGVIVGGTTGEGQLMSWDEHIMLIGHTVNCFGGSIKVIGNTGSNSTREAIHATEQGFAVGMHAALHINPYYGKT- 168 (360)
T ss_dssp HHTTCCEEEESSTTTTGGGSCHHHHHHHHHHHHHHHTTTSEEEEECCCSSHHHHHHHHHHHHHTTCSEEEEECCCSSCC-
T ss_pred HHcCCCEEEecccccChhhCCHHHHHHHHHHHHHHhCCCCeEEEecCCCCHHHHHHHHHHHHHcCCCEEEEcCCCCCCC-
Confidence 57899999998876632211211 23456666667777899998555555555553 3347999999999976542
Q ss_pred hcCHHHHHHHHHHH
Q 017781 314 AEGEKGVRRVLEML 327 (366)
Q Consensus 314 ~~G~~gv~~~~~~l 327 (366)
.++++.+.++.+
T Consensus 169 --sq~gl~~hf~~I 180 (360)
T 4dpp_A 169 --SIEGLIAHFQSV 180 (360)
T ss_dssp --CHHHHHHHHHTT
T ss_pred --CHHHHHHHHHHH
Confidence 456655555444
|
| >4af0_A Inosine-5'-monophosphate dehydrogenase; oxidoreductase, GTP biosynthesis, drug resistance; HET: MOA IMP; 2.20A {Cryptococcus neoformans} PDB: 4af0_B* | Back alignment and structure |
|---|
Probab=93.47 E-value=0.26 Score=49.73 Aligned_cols=245 Identities=18% Similarity=0.199 Sum_probs=111.4
Q ss_pred hcccceeeecccc-CCCCCCccceeEc-CcccCCceEecccccccccCChhhHHHHHHHHHcCCceecCCCCCCCHHHHh
Q 017781 41 NAFSRILFRPRIL-IDVSKIDMNTTVL-GFKISMPIMIAPTAMQKMAHPEGEYATARAASAAGTIMTLSSWSTSSVEEVA 118 (366)
Q Consensus 41 ~~f~~i~l~pr~l-~~~~~vd~st~l~-g~~l~~Pi~iApm~~~~l~~~~~e~~la~aa~~~G~~~~vs~~~~~~~e~i~ 118 (366)
-.|||+.|+|..- ...++|||+|.+- +.++..||+.|||.-.+ |..||.+.++.|...++. -++++|+.+
T Consensus 60 LTfDDVlLvP~~s~v~p~~Vdl~t~lt~~i~L~iPlvSA~MDTVT------e~~MAIamAr~GGiGvIH--~n~sie~Qa 131 (556)
T 4af0_A 60 LTYNDFLVLPGHINFPASDVSLQSKATKNIVLNTPFLSSPMDTVT------EDRMAIALALHGGLGIIH--HNCSAEEQA 131 (556)
T ss_dssp CCGGGEEECCCCCCSCGGGCCCCEEEETTEEESSCEEECCCTTTC------SHHHHHHHHHTTCEEEEC--CSSCHHHHH
T ss_pred CChhhEEEccCCCCCCcccceeeeeccCCcEeCCCEEecCccccc------CHHHHHHHHHCCCeEEEc--CCCCHHHHH
Confidence 4799999999765 3446899999995 78999999999995433 889999999999999994 467777654
Q ss_pred cc------CCCceEEE-eeecCCHHHHHHHHHHHHHcCCCEEEEecCCCCC----c-chhHHHhhh--c-----------
Q 017781 119 ST------GPGIRFFQ-LYVYKDRNVVAQLVRRAERAGFKAIALTVDTPRL----G-RREADIKNR--F----------- 173 (366)
Q Consensus 119 ~~------~~~~~~~Q-ly~~~d~~~~~~~l~ra~~~G~~ai~vtvd~p~~----g-~r~~d~~~~--~----------- 173 (366)
+. .. ..|+. -..-.....+.+.++..++.++.++.|+-+.... | .-.+|++-. .
T Consensus 132 ~~V~~VKr~e-~g~i~dPvtl~P~~Tv~da~~l~~~~~isgvpVvd~g~~~~kLvGIvT~RD~rf~d~~~~V~evMT~~l 210 (556)
T 4af0_A 132 AMVRRVKKYE-NGFITDPLCLGPDATVGDVLEIKAKFGFCGVPITETGEPDSKLLGIVTGRDVQFQDAETPIKSVMTTEV 210 (556)
T ss_dssp HHHHHHHHCC-C--------------------------------------------------------------------
T ss_pred HHHHHHHhcc-cCccCCCeEcCCCCCHHHHHHHHHHhCCCccccccccCcCCEEEEEEecccccccccceEhhhhcccce
Confidence 31 11 12221 0111223445556666667777777765442110 0 011222210 0
Q ss_pred -CCCCccccccccccccCCCccccchhhHHHhhhc--cCCCCCHHHHHHHHHhc---------CCCEEEEeccCHHH---
Q 017781 174 -TLPPFLTLKNFQGLDLGKMDEANDSGLAAYVAGQ--IDRSLSWKDVKWLQTIT---------KLPILVKGVLTAED--- 238 (366)
Q Consensus 174 -~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~d~~~~~~~i~~lr~~~---------~~pv~vK~v~~~~d--- 238 (366)
..|.++++.....+. .+.+...+ ..+... .-.-.+.+++...++.- .+.+..-...+.++
T Consensus 211 vt~~~~~~leeA~~iL----~~~kiekl-pVVd~~g~LvGlIT~kDi~k~~~~p~A~k~d~~grL~VgAAVgv~~d~~eR 285 (556)
T 4af0_A 211 VTGSSPITLEKANSLL----RETKKGKL-PIVDSNGHLVSLVARSDLLKNQNYPYASKVPESKQLYCGAAIGTRPGDKDR 285 (556)
T ss_dssp ----------------------------------------------------CTTCCBCTTTCCBCCEEEECSSHHHHHH
T ss_pred EEecCCCCHHHHHHHH----HHccccce-eEEccCCcEEEEEEechhhhhhhCCcchhcchhhceeeEEEeccCccHHHH
Confidence 000000000000000 00000000 000000 00001223333222210 01122222233333
Q ss_pred ----HHcCCcEEEEcCCCccCCCCCcchHHHHHHHHHHcCCCceEEEecCCCCHHHHHHHHHhCcCEEEec
Q 017781 239 ----VQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFIG 305 (366)
Q Consensus 239 ----~~aGad~I~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~i~vi~~GGI~~~~dv~kalalGAd~V~ig 305 (366)
.++|+|.|++....|+ ....++.+..+++..+ +++||+ |.|.|++-+...+..|||+|-+|
T Consensus 286 ~~aLv~AGvD~iviD~ahGh----s~~v~~~i~~ik~~~p-~~~via-GNVaT~e~a~~Li~aGAD~vkVG 350 (556)
T 4af0_A 286 LKLLAEAGLDVVVLDSSQGN----SVYQIEFIKWIKQTYP-KIDVIA-GNVVTREQAAQLIAAGADGLRIG 350 (556)
T ss_dssp HHHHHHTTCCEEEECCSCCC----SHHHHHHHHHHHHHCT-TSEEEE-EEECSHHHHHHHHHHTCSEEEEC
T ss_pred HHHHHhcCCcEEEEeccccc----cHHHHHHHHHHHhhCC-cceEEe-ccccCHHHHHHHHHcCCCEEeec
Confidence 8999999999865443 2345678888887763 688777 88999999998889999999776
|
| >3mkc_A Racemase; metabolic process, PSI2, NYSGXRC, structu genomics, protein structure initiative, NEW YORK SGX resear for structural genomics; 1.77A {Pseudovibrio SP} PDB: 3nzg_A | Back alignment and structure |
|---|
Probab=93.36 E-value=0.49 Score=45.97 Aligned_cols=84 Identities=8% Similarity=-0.073 Sum_probs=63.2
Q ss_pred CHHHHHHHHHhc--CCCEEEEec--c-CHHH--------HHcCCcEEEEcCCCccCCCCCcchHHHHHHHHHHcCCCceE
Q 017781 213 SWKDVKWLQTIT--KLPILVKGV--L-TAED--------VQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPV 279 (366)
Q Consensus 213 ~~~~i~~lr~~~--~~pv~vK~v--~-~~~d--------~~aGad~I~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~i~v 279 (366)
+.+.++.+|+.+ +.+|.+..- . +.++ .+.|+++|-- ...+..++.+.++++.+ .+||
T Consensus 191 d~e~v~avR~a~G~d~~l~vDaN~~~~~~~~A~~~~~~L~~~~i~~iEe--------P~~~~d~~~~~~l~~~~--~iPI 260 (394)
T 3mkc_A 191 VAYYLRELRGILGHDTDMMVDYLYRFTDWYEVARLLNSIEDLELYFAEA--------TLQHDDLSGHAKLVENT--RSRI 260 (394)
T ss_dssp HHHHHHHHHHHHCSSSEEEEECTTCCCCHHHHHHHHHHTGGGCCSEEES--------CSCTTCHHHHHHHHHHC--SSCB
T ss_pred HHHHHHHHHHHhCCCCeEEEeCCCCCCCHHHHHHHHHHhhhcCCeEEEC--------CCCchhHHHHHHHHhhC--CCCE
Confidence 456788888887 567887743 3 5554 5678888741 11223577888888887 7999
Q ss_pred EEecCCCCHHHHHHHHHhC-cCEEEecH
Q 017781 280 FLDGGVRRGTDVFKALALG-ASGIFIGR 306 (366)
Q Consensus 280 i~~GGI~~~~dv~kalalG-Ad~V~igr 306 (366)
++++.+.+..|+.+++..| +|.|++--
T Consensus 261 a~dE~~~~~~~~~~~l~~~~~d~v~~k~ 288 (394)
T 3mkc_A 261 CGAEMSTTRFEAEEWITKGKVHLLQSDY 288 (394)
T ss_dssp EECTTCCHHHHHHHHHHTTCCSEECCCT
T ss_pred EeCCCCCCHHHHHHHHHcCCCCeEecCc
Confidence 9999999999999999987 89999853
|
| >2o56_A Putative mandelate racemase; dehydratase, structural genomics, protein structure initiati 2; 2.00A {Salmonella typhimurium} | Back alignment and structure |
|---|
Probab=93.32 E-value=0.39 Score=46.71 Aligned_cols=83 Identities=12% Similarity=0.066 Sum_probs=63.9
Q ss_pred CHHHHHHHHHhc--CCCEEEEec--cCHHH--------HHcCCcEEEEcCCCccCCCCCcchHHHHHHHHHHcCCCceEE
Q 017781 213 SWKDVKWLQTIT--KLPILVKGV--LTAED--------VQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVF 280 (366)
Q Consensus 213 ~~~~i~~lr~~~--~~pv~vK~v--~~~~d--------~~aGad~I~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~i~vi 280 (366)
..+.++.+|+.+ +.+|.+..- .+.++ .+.|+++|-- ...+..++.+.++++.+ ++||+
T Consensus 201 ~~e~v~avR~a~G~d~~l~vDan~~~~~~~a~~~~~~l~~~~i~~iE~--------P~~~~~~~~~~~l~~~~--~iPIa 270 (407)
T 2o56_A 201 GYDRMAAIRDAVGPDVDIIAEMHAFTDTTSAIQFGRMIEELGIFYYEE--------PVMPLNPAQMKQVADKV--NIPLA 270 (407)
T ss_dssp HHHHHHHHHHHHCTTSEEEEECTTCSCHHHHHHHHHHHGGGCCSCEEC--------SSCSSSHHHHHHHHHHC--CSCEE
T ss_pred HHHHHHHHHHhcCCCCEEEEECCCCCCHHHHHHHHHHHHhcCCCEEeC--------CCChhhHHHHHHHHHhC--CCCEE
Confidence 457789999987 578888843 45555 5677777641 11234678888888887 79999
Q ss_pred EecCCCCHHHHHHHHHhC-cCEEEec
Q 017781 281 LDGGVRRGTDVFKALALG-ASGIFIG 305 (366)
Q Consensus 281 ~~GGI~~~~dv~kalalG-Ad~V~ig 305 (366)
+++.+.+..++.+++..| +|.|++-
T Consensus 271 ~dE~~~~~~~~~~~i~~~~~d~v~ik 296 (407)
T 2o56_A 271 AGERIYWRWGYRPFLENGSLSVIQPD 296 (407)
T ss_dssp ECTTCCHHHHHHHHHHTTCCSEECCC
T ss_pred eCCCcCCHHHHHHHHHcCCCCEEecC
Confidence 999999999999999988 8999884
|
| >3ddm_A Putative mandelate racemase/muconate lactonizing enzyme; structural genomics, NYSGXRC, target 9284B, enolase family, PSI-2; 2.60A {Bordetella bronchiseptica} | Back alignment and structure |
|---|
Probab=93.26 E-value=0.32 Score=47.25 Aligned_cols=83 Identities=10% Similarity=0.041 Sum_probs=60.8
Q ss_pred CHHHHHHHHHhc--CCCEEEEec--cCHHH--------HHcCCcEEEEcCCCccCCCCCcch-HHHHHHHHHHcCCCceE
Q 017781 213 SWKDVKWLQTIT--KLPILVKGV--LTAED--------VQAGAAGIIVSNHGARQLDYVPAT-IMALEEVVKATQGRIPV 279 (366)
Q Consensus 213 ~~~~i~~lr~~~--~~pv~vK~v--~~~~d--------~~aGad~I~vs~~gg~~~~~~~~~-~~~l~~i~~~~~~~i~v 279 (366)
+.+.++.+|+.+ +.++.+..- .+.++ .+.|+++|- + ...+.. ++.+.++++.. .+||
T Consensus 185 d~~~v~avR~a~g~~~~l~vDaN~~~~~~~A~~~~~~L~~~~i~~iE-------e-P~~~~d~~~~~~~l~~~~--~iPI 254 (392)
T 3ddm_A 185 DVRNALHVRELLGAATPLMADANQGWDLPRARQMAQRLGPAQLDWLE-------E-PLRADRPAAEWAELAQAA--PMPL 254 (392)
T ss_dssp HHHHHHHHHHHHCSSSCEEEECTTCCCHHHHHHHHHHHGGGCCSEEE-------C-CSCTTSCHHHHHHHHHHC--SSCE
T ss_pred HHHHHHHHHHhcCCCceEEEeCCCCCCHHHHHHHHHHHHHhCCCEEE-------C-CCCccchHHHHHHHHHhc--CCCE
Confidence 345677788876 467777743 34444 566788774 1 112224 77888888877 7999
Q ss_pred EEecCCCCHHHHHHHHHhC-cCEEEec
Q 017781 280 FLDGGVRRGTDVFKALALG-ASGIFIG 305 (366)
Q Consensus 280 i~~GGI~~~~dv~kalalG-Ad~V~ig 305 (366)
+++..+.+..|+.+++..| +|.|++-
T Consensus 255 a~dE~~~~~~~~~~~i~~~a~d~v~~k 281 (392)
T 3ddm_A 255 AGGENIAGVAAFETALAARSLRVMQPD 281 (392)
T ss_dssp EECTTCCSHHHHHHHHHHTCEEEECCC
T ss_pred EeCCCCCCHHHHHHHHHcCCCCEEEeC
Confidence 9999999999999999987 7999884
|
| >1chr_A Chloromuconate cycloisomerase; 3.00A {Ralstonia eutropha} PDB: 2chr_A | Back alignment and structure |
|---|
Probab=93.25 E-value=0.63 Score=44.71 Aligned_cols=84 Identities=13% Similarity=0.035 Sum_probs=60.5
Q ss_pred CHHHHHHHHHhc--CCCEEEEec--cCHHH--------HHcCCcEEEEcCCCccCCCCCcchHHHHHHHHHHcCCCceEE
Q 017781 213 SWKDVKWLQTIT--KLPILVKGV--LTAED--------VQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVF 280 (366)
Q Consensus 213 ~~~~i~~lr~~~--~~pv~vK~v--~~~~d--------~~aGad~I~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~i~vi 280 (366)
+.+.++.+|+.+ +.++.+..- .+.++ .+.|+++|- + ...+..++.+.++++.. .+||+
T Consensus 174 d~~~v~avR~~~g~~~~l~vDan~~~~~~~a~~~~~~l~~~~i~~iE-------q-P~~~~~~~~~~~l~~~~--~iPia 243 (370)
T 1chr_A 174 DLIHMEALSNSLGSKAYLRVDVNQAWDEQVASVYIPELEALGVELIE-------Q-PVGRENTQALRRLSDNN--RVAIM 243 (370)
T ss_dssp HHHHHHHHHHHSSTTCCEEEECTTCCCTTHHHHHTHHHHTTTEEEEE-------C-CSCTTCHHHHHHHHHHS--CSEEE
T ss_pred HHHHHHHHHHhcCCCCEEEEECCCCCCHHHHHHHHHHHHhcCCCEEE-------C-CCCcccHHHHHHHHhhC--CCCEE
Confidence 456678888877 367877733 23333 556777664 1 11233567788888877 79999
Q ss_pred EecCCCCHHHHHHHHHhC-cCEEEecH
Q 017781 281 LDGGVRRGTDVFKALALG-ASGIFIGR 306 (366)
Q Consensus 281 ~~GGI~~~~dv~kalalG-Ad~V~igr 306 (366)
++.-+.+..|+.+++..| +|.|++--
T Consensus 244 ~dE~~~~~~~~~~~~~~~~~d~v~~k~ 270 (370)
T 1chr_A 244 ADESLSTLASAFDLARDRSVDVFSLKL 270 (370)
T ss_dssp ESSSCCSHHHHHHHHTTTSCSEEEECT
T ss_pred eCCCcCCHHHHHHHHHcCCCCEEEECc
Confidence 999999999999999987 89999863
|
| >2yw3_A 4-hydroxy-2-oxoglutarate aldolase/2-deydro-3- deoxyphosphogluconate aldolase; structural genomics, NPPSFA; 1.67A {Thermus thermophilus} PDB: 2yw4_A | Back alignment and structure |
|---|
Probab=93.16 E-value=0.35 Score=42.74 Aligned_cols=74 Identities=27% Similarity=0.289 Sum_probs=49.5
Q ss_pred HHHHHHHHhcCCCEEEEeccCHHH----HHcCCcEEEEcCCCccCCCCCcchHHHHHHHHHHcCCCceEEEecCCCCHHH
Q 017781 215 KDVKWLQTITKLPILVKGVLTAED----VQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTD 290 (366)
Q Consensus 215 ~~i~~lr~~~~~pv~vK~v~~~~d----~~aGad~I~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~i~vi~~GGI~~~~d 290 (366)
+.++.+++ -++.+....+.+.++ .++|+|+++..+ ...+.+..++ .. .++++. |+.|.++
T Consensus 53 ~~i~~~~~-~~~~~gag~vl~~d~~~~A~~~GAd~v~~~~----------~d~~v~~~~~-~~--g~~~i~--G~~t~~e 116 (207)
T 2yw3_A 53 EALKALRK-SGLLLGAGTVRSPKEAEAALEAGAAFLVSPG----------LLEEVAALAQ-AR--GVPYLP--GVLTPTE 116 (207)
T ss_dssp HHHHHHTT-SSCEEEEESCCSHHHHHHHHHHTCSEEEESS----------CCHHHHHHHH-HH--TCCEEE--EECSHHH
T ss_pred HHHHHHhC-CCCEEEeCeEeeHHHHHHHHHcCCCEEEcCC----------CCHHHHHHHH-Hh--CCCEEe--cCCCHHH
Confidence 45677777 445555544455554 899999996422 1223333333 34 466665 3999999
Q ss_pred HHHHHHhCcCEEEe
Q 017781 291 VFKALALGASGIFI 304 (366)
Q Consensus 291 v~kalalGAd~V~i 304 (366)
+.+|+.+|||.|.+
T Consensus 117 ~~~A~~~Gad~v~~ 130 (207)
T 2yw3_A 117 VERALALGLSALKF 130 (207)
T ss_dssp HHHHHHTTCCEEEE
T ss_pred HHHHHHCCCCEEEE
Confidence 99999999999998
|
| >2hmc_A AGR_L_411P, dihydrodipicolinate synthase; alpha-beta barrel (TIM barrel), structural genomics, PSI-2, structure initiative; HET: MSE; 1.90A {Agrobacterium tumefaciens str} | Back alignment and structure |
|---|
Probab=93.14 E-value=0.14 Score=49.07 Aligned_cols=100 Identities=13% Similarity=0.124 Sum_probs=60.3
Q ss_pred CCCCHHHHHHHHHhcCCCEEEEeccCHHHHHcCCcEEEEcCCCccCCCCCcchHHHHHHHHHHcCCCceEEEecCCCCHH
Q 017781 210 RSLSWKDVKWLQTITKLPILVKGVLTAEDVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGT 289 (366)
Q Consensus 210 ~~~~~~~i~~lr~~~~~pv~vK~v~~~~d~~aGad~I~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~i~vi~~GGI~~~~ 289 (366)
..++++.++++.+.. .+.|+|+|++.++.|-...-...-...+-+. .+.+++|||+--|=.+-.
T Consensus 42 g~ID~~~l~~lv~~l--------------i~~Gv~Gl~v~GtTGE~~~Ls~eEr~~vi~~--~~~grvpViaGvg~~st~ 105 (344)
T 2hmc_A 42 RTPDFDALVRKGKEL--------------IADGMSAVVYCGSMGDWPLLTDEQRMEGVER--LVKAGIPVIVGTGAVNTA 105 (344)
T ss_dssp SSBCHHHHHHHHHHH--------------HHTTCCCEEESSGGGTGGGSCHHHHHHHHHH--HHHTTCCEEEECCCSSHH
T ss_pred CCcCHHHHHHHHHHH--------------HHcCCCEEEeCccCcChhhCCHHHHHHHHHH--HhCCCCcEEEecCCCCHH
Confidence 456666665554432 5679999999887663221122222223233 345689988766655555
Q ss_pred HHHH----HHHhCcCEEEecHHHHHH-hhhcCHHHHHHHHHHHH
Q 017781 290 DVFK----ALALGASGIFIGRPVVYS-LAAEGEKGVRRVLEMLR 328 (366)
Q Consensus 290 dv~k----alalGAd~V~igr~~l~~-l~~~G~~gv~~~~~~l~ 328 (366)
++++ |-.+|||+|++-.|+++. . .++++.++++.+.
T Consensus 106 eai~la~~A~~~Gadavlv~~P~y~~~~---s~~~l~~~f~~IA 146 (344)
T 2hmc_A 106 SAVAHAVHAQKVGAKGLMVIPRVLSRGS---VIAAQKAHFKAIL 146 (344)
T ss_dssp HHHHHHHHHHHHTCSEEEECCCCSSSTT---CHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCCCEEEECCCccCCCC---CHHHHHHHHHHHH
Confidence 5543 334899999999998764 2 3566655555443
|
| >4e4u_A Mandalate racemase/muconate lactonizing enzyme; mandelate racemase, aldolase, structural genomics, biology; 1.35A {Unidentified} | Back alignment and structure |
|---|
Probab=93.14 E-value=0.46 Score=46.53 Aligned_cols=127 Identities=16% Similarity=0.125 Sum_probs=86.6
Q ss_pred CCHHHHHHHHHHHHHcCCCEEEEecCCCCCcchhHHHhhhcCCCCccccccccccccCCCccccchhhHHHhhhccCCCC
Q 017781 133 KDRNVVAQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLTLKNFQGLDLGKMDEANDSGLAAYVAGQIDRSL 212 (366)
Q Consensus 133 ~d~~~~~~~l~ra~~~G~~ai~vtvd~p~~g~r~~d~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~ 212 (366)
.+++.+.+.++++.+.|++++=+.+..+..+. .+. .+ . . .+...
T Consensus 143 ~~~e~~~~~a~~~~~~G~~~iKlK~g~~~~~~------~g~-~~-------------------~----~------~~~~~ 186 (412)
T 4e4u_A 143 DDPDLAAECAAENVKLGFTAVKFDPAGPYTAY------SGH-QL-------------------S----L------EVLDR 186 (412)
T ss_dssp SCHHHHHHHHHHHHHHTCSEEEECCSCCCBTT------CCB-CC-------------------C----H------HHHHH
T ss_pred CCHHHHHHHHHHHHHcCCCEEEECCCCCCccc------ccc-cc-------------------c----h------hhHHH
Confidence 46777777788888889999988665432110 000 00 0 0 01122
Q ss_pred CHHHHHHHHHhc--CCCEEEEec--cCHHH--------HHcCCcEEEEcCCCccCCCCCcchHHHHHHHHHHcCCCceEE
Q 017781 213 SWKDVKWLQTIT--KLPILVKGV--LTAED--------VQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVF 280 (366)
Q Consensus 213 ~~~~i~~lr~~~--~~pv~vK~v--~~~~d--------~~aGad~I~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~i~vi 280 (366)
+.+.++.+|+.+ +.+|.+..- .+.++ .+.|+++|-- ...+..++.+.++++.+ .+||+
T Consensus 187 d~~~v~avR~a~G~d~~l~vDaN~~~~~~~A~~~~~~L~~~~i~~iEe--------P~~~~d~~~~~~l~~~~--~iPIa 256 (412)
T 4e4u_A 187 CELFCRRVREAVGSKADLLFGTHGQMVPSSAIRLAKRLEKYDPLWFEE--------PVPPGQEEAIAQVAKHT--SIPIA 256 (412)
T ss_dssp HHHHHHHHHHHHTTSSEEEECCCSCBCHHHHHHHHHHHGGGCCSEEEC--------CSCSSCHHHHHHHHHTC--SSCEE
T ss_pred HHHHHHHHHHHhCCCCeEEEECCCCCCHHHHHHHHHHhhhcCCcEEEC--------CCChhhHHHHHHHHhhC--CCCEE
Confidence 456788899887 578888743 35554 5678888751 11223577888888877 79999
Q ss_pred EecCCCCHHHHHHHHHhC-cCEEEec
Q 017781 281 LDGGVRRGTDVFKALALG-ASGIFIG 305 (366)
Q Consensus 281 ~~GGI~~~~dv~kalalG-Ad~V~ig 305 (366)
++.-+.+..|+.+++..| +|.|++-
T Consensus 257 ~dE~~~~~~~~~~~i~~~a~d~v~~d 282 (412)
T 4e4u_A 257 TGERLTTKYEFHKLLQAGGASILQLN 282 (412)
T ss_dssp ECTTCCHHHHHHHHHHTTCCSEECCC
T ss_pred ecCccCCHHHHHHHHHcCCCCEEEeC
Confidence 999999999999999998 7999885
|
| >3tr2_A Orotidine 5'-phosphate decarboxylase; purines, pyrimidines, nucleosides, nucleotides, lyase; 2.00A {Coxiella burnetii} | Back alignment and structure |
|---|
Probab=93.11 E-value=0.14 Score=46.57 Aligned_cols=58 Identities=26% Similarity=0.415 Sum_probs=39.3
Q ss_pred HHcCCcEEEEcCCCccCCCCCcchHHHHHHHHHHcCCCceEEEecCCCCHHH----------HHHHHHhCcCEEEecHHH
Q 017781 239 VQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTD----------VFKALALGASGIFIGRPV 308 (366)
Q Consensus 239 ~~aGad~I~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~i~vi~~GGI~~~~d----------v~kalalGAd~V~igr~~ 308 (366)
.++|+|++++|.+ -+..+++.++.+. ++++.|||-..+ ..+++..|||.+.+||++
T Consensus 154 ~~~g~~GvV~s~~-------------e~~~ir~~~~~~f-l~vtPGIr~~g~~~~dQ~rv~t~~~~~~aGad~lVvGr~I 219 (239)
T 3tr2_A 154 KSAGLDGVVCSAQ-------------EAALLRKQFDRNF-LLVTPGIRLETDEKGDQKRVMTPRAAIQAGSDYLVIGRPI 219 (239)
T ss_dssp HHHTCCEEECCHH-------------HHHHHHTTCCTTS-EEEECCBC----------CCBCHHHHHHHTCSEEEECHHH
T ss_pred HHcCCCEEEECch-------------hHHHHHHhcCCCc-EEECCCcCCCCCCcCcccccCCHHHHHHcCCCEEEEChHH
Confidence 5779999987541 1234555554344 778899985432 557888999999999997
Q ss_pred HH
Q 017781 309 VY 310 (366)
Q Consensus 309 l~ 310 (366)
..
T Consensus 220 ~~ 221 (239)
T 3tr2_A 220 TQ 221 (239)
T ss_dssp HT
T ss_pred hC
Confidence 64
|
| >3sbf_A Mandelate racemase / muconate lactonizing enzyme; enolase fold, acid sugar dehydratase, D-araninonate, isomera; HET: EPE D8T; 1.50A {Vibrionales bacterium swat-3} PDB: 3r25_A 3dfh_A 4gis_A 4gir_A 4ggh_A 3gy1_A | Back alignment and structure |
|---|
Probab=93.05 E-value=0.52 Score=45.87 Aligned_cols=140 Identities=14% Similarity=-0.022 Sum_probs=87.7
Q ss_pred cCCHHHHHHHHHHHHHcCCCEEEEecCCCCCcchhHHHhhhcCCCCccccccccccccCCCccccchhhHHHhhhccCCC
Q 017781 132 YKDRNVVAQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLTLKNFQGLDLGKMDEANDSGLAAYVAGQIDRS 211 (366)
Q Consensus 132 ~~d~~~~~~~l~ra~~~G~~ai~vtvd~p~~g~r~~d~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~ 211 (366)
..+++.+.+.++++.+.||+++=+.++.+... .|. ..-|.+.. .+. .+....+..
T Consensus 131 ~~~~e~~~~~a~~~~~~G~~~~K~KvG~~~~~---~~~---~~~~~~~~---------------~g~----~~~~~~~~~ 185 (401)
T 3sbf_A 131 SDTMEGIYDLVEGFLEKGYKHIRCQLGFYGGV---PTD---LHTTQNPT---------------EGS----YYDQDQYMD 185 (401)
T ss_dssp ESSHHHHHHHHHHHHHTTCCEEEEEESCCCSC---GGG---SCCCSSCC---------------SSE----ECCHHHHHH
T ss_pred CCCHHHHHHHHHHHHHcCCCEEEEeeccCCcc---ccc---cccccccc---------------ccc----cccchHHHH
Confidence 46778888888888889999998887653210 000 00000000 000 000000012
Q ss_pred CCHHHHHHHHHhc--CCCEEEEec--cCHHH--------HHcCCcEEEEcCCCccCCCCCcchHHHHHHHHHHcCCCceE
Q 017781 212 LSWKDVKWLQTIT--KLPILVKGV--LTAED--------VQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPV 279 (366)
Q Consensus 212 ~~~~~i~~lr~~~--~~pv~vK~v--~~~~d--------~~aGad~I~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~i~v 279 (366)
...+.++.+|+.+ +.+|.+..- .+.++ .+.|+++|-- . ..+..++.+.++++.+ .+||
T Consensus 186 ~d~~~v~avR~a~G~d~~l~vDan~~~~~~~A~~~~~~L~~~~i~~iEq-------P-~~~~~~~~~~~l~~~~--~iPI 255 (401)
T 3sbf_A 186 NTLTMFKSLREKYGNQFHILHDVHERLFPNQAIQFAKEVEQYKPYFIED-------I-LPPNQTEWLDNIRSQS--SVSL 255 (401)
T ss_dssp HHHHHHHHHHHHHTTSSEEEEECTTCSCHHHHHHHHHHHGGGCCSCEEC-------S-SCTTCGGGHHHHHTTC--CCCE
T ss_pred HHHHHHHHHHHHcCCCCEEEEECCCCCCHHHHHHHHHHHHhcCCCEEEC-------C-CChhHHHHHHHHHhhC--CCCE
Confidence 2456789999987 578888843 45554 5677777741 0 1122456677777766 7999
Q ss_pred EEecCCCCHHHHHHHHHhC-cCEEEecH
Q 017781 280 FLDGGVRRGTDVFKALALG-ASGIFIGR 306 (366)
Q Consensus 280 i~~GGI~~~~dv~kalalG-Ad~V~igr 306 (366)
++++.+.+..|+.+++..| +|.|++--
T Consensus 256 a~dE~~~~~~~~~~~i~~~~~d~v~~k~ 283 (401)
T 3sbf_A 256 GLGELFNNPEEWKSLIANRRIDFIRCHV 283 (401)
T ss_dssp EECTTCCSHHHHHHHHHTTCCSEECCCG
T ss_pred EeCCccCCHHHHHHHHhcCCCCEEecCc
Confidence 9999999999999999987 79998864
|
| >2ox4_A Putative mandelate racemase; enolase, dehydratase, structural genomics, protein structure initiative, PSI, nysgrc; 1.80A {Zymomonas mobilis} | Back alignment and structure |
|---|
Probab=93.03 E-value=0.37 Score=46.81 Aligned_cols=133 Identities=15% Similarity=0.047 Sum_probs=86.7
Q ss_pred CHHHHHHHHHHHHHcCCCEEEEecCC-CCCcchhHHHhhhcCCCCccccccccccccCCCccccchhhHHHhhhccCCCC
Q 017781 134 DRNVVAQLVRRAERAGFKAIALTVDT-PRLGRREADIKNRFTLPPFLTLKNFQGLDLGKMDEANDSGLAAYVAGQIDRSL 212 (366)
Q Consensus 134 d~~~~~~~l~ra~~~G~~ai~vtvd~-p~~g~r~~d~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~ 212 (366)
+.+.+.+.++++.+.|++++-+.+-. ...|.. |.-|. .+. . ...+...
T Consensus 146 ~~e~~~~~a~~~~~~Gf~~vKik~~~~~~~G~~-------~~s~~-------~g~--------~---------~~~~~~~ 194 (403)
T 2ox4_A 146 RKEEYAEEALKAVAEGYDAVKVDVLAHDRNGSR-------EGVFL-------EGP--------L---------PSETIKI 194 (403)
T ss_dssp SHHHHHHHHHHHHHTTCSEEEECCSSSCTTSCC-------TTCCC-------SSS--------C---------CHHHHHH
T ss_pred CHHHHHHHHHHHHHcCCCEEEEeccccCCcccc-------ccCcc-------cCC--------C---------chHHHHH
Confidence 77777788888889999999876420 000110 10010 000 0 0001123
Q ss_pred CHHHHHHHHHhc--CCCEEEEec--cCHHH--------HHcCCcEEEEcCCCccCCCCCcchHHHHHHHHHHcCCCceEE
Q 017781 213 SWKDVKWLQTIT--KLPILVKGV--LTAED--------VQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVF 280 (366)
Q Consensus 213 ~~~~i~~lr~~~--~~pv~vK~v--~~~~d--------~~aGad~I~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~i~vi 280 (366)
..+.++.+|+.+ +++|.+..- .+.++ .+.|+++|-- ...+..++.+.++++.+ ++||+
T Consensus 195 ~~e~v~avr~avG~d~~l~vDan~~~~~~~ai~~~~~l~~~~i~~iE~--------P~~~~d~~~~~~l~~~~--~iPIa 264 (403)
T 2ox4_A 195 GVERVEAIRNAVGPDVDIIVENHGHTDLVSAIQFAKAIEEFNIFFYEE--------INTPLNPRLLKEAKKKI--DIPLA 264 (403)
T ss_dssp HHHHHHHHHHHHCTTSEEEEECTTCSCHHHHHHHHHHHGGGCEEEEEC--------CSCTTSTHHHHHHHHTC--CSCEE
T ss_pred HHHHHHHHHHHhCCCCeEEEECCCCCCHHHHHHHHHHHHhhCCCEEeC--------CCChhhHHHHHHHHHhC--CCCEE
Confidence 456789999987 588888843 45555 5667776641 01223577788888877 79999
Q ss_pred EecCCCCHHHHHHHHHhC-cCEEEecHH
Q 017781 281 LDGGVRRGTDVFKALALG-ASGIFIGRP 307 (366)
Q Consensus 281 ~~GGI~~~~dv~kalalG-Ad~V~igr~ 307 (366)
+++.+.+..++.+++..| +|.|++--.
T Consensus 265 ~dE~~~~~~~~~~~i~~~~~d~v~ik~~ 292 (403)
T 2ox4_A 265 SGERIYSRWGFLPFLEDRSIDVIQPDLG 292 (403)
T ss_dssp ECTTCCHHHHHHHHHHTTCCSEECCCHH
T ss_pred ecCCcCCHHHHHHHHHcCCCCEEecCcc
Confidence 999999999999999987 899998643
|
| >1eix_A Orotidine 5'-monophosphate decarboxylase; alpha-beta-barrel, protein-inhibitor complex, homodimer, lyase; HET: BMQ; 2.50A {Escherichia coli} SCOP: c.1.2.3 PDB: 1jjk_A* 1l2u_A | Back alignment and structure |
|---|
Probab=93.00 E-value=0.1 Score=47.42 Aligned_cols=58 Identities=22% Similarity=0.288 Sum_probs=41.9
Q ss_pred HHcCCcEEEEcCCCccCCCCCcchHHHHHHHHHHcCCCceEEEecCCCCHH----------HHHHHHHhCcCEEEecHHH
Q 017781 239 VQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGT----------DVFKALALGASGIFIGRPV 308 (366)
Q Consensus 239 ~~aGad~I~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~i~vi~~GGI~~~~----------dv~kalalGAd~V~igr~~ 308 (366)
.+.|.++++.+. .+ +.++++..+ +.+++++|||+-.. .+.+++..|||.+.+||++
T Consensus 159 ~~~G~~g~V~~~------------~e-i~~lr~~~~-~~~i~v~gGI~~~g~~~~dq~rv~t~~~a~~aGad~iVvGr~I 224 (245)
T 1eix_A 159 QKCGLDGVVCSA------------QE-AVRFKQVFG-QEFKLVTPGIRPQGSEAGDQRRIMTPEQALSAGVDYMVIGRPV 224 (245)
T ss_dssp HHTTCSEEECCG------------GG-HHHHHHHHC-SSSEEEECCBCCTTCCCTTCCSCBCHHHHHHTTCSEEEECHHH
T ss_pred HHcCCCeEEeCH------------HH-HHHHHHhcC-CCCEEEECCcCCCCCCccchhccCCHHHHHHcCCCEEEECHHH
Confidence 467888876432 23 556666554 45899999998531 3677888999999999998
Q ss_pred HH
Q 017781 309 VY 310 (366)
Q Consensus 309 l~ 310 (366)
+.
T Consensus 225 ~~ 226 (245)
T 1eix_A 225 TQ 226 (245)
T ss_dssp HT
T ss_pred cC
Confidence 64
|
| >3vcn_A Mannonate dehydratase; enolase, magnesium binding site, enzyme function initiative, lyase; 1.45A {Caulobacter crescentus} PDB: 4gme_A* 4fi4_A 3thu_A | Back alignment and structure |
|---|
Probab=92.98 E-value=0.69 Score=45.42 Aligned_cols=85 Identities=8% Similarity=-0.110 Sum_probs=65.1
Q ss_pred CCHHHHHHHHHhc--CCCEEEEec--cCHHH--------HHcCCcEEEEcCCCccCCCCCcchHHHHHHHHHHcCCCceE
Q 017781 212 LSWKDVKWLQTIT--KLPILVKGV--LTAED--------VQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPV 279 (366)
Q Consensus 212 ~~~~~i~~lr~~~--~~pv~vK~v--~~~~d--------~~aGad~I~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~i~v 279 (366)
...+.++.+|+.+ +.+|.+..- .+.++ .+.|+++|-- . ..+..++.+.++++.+ .+||
T Consensus 212 ~d~e~v~avR~a~G~d~~l~vDaN~~~~~~~A~~~~~~L~~~~i~~iEq-------P-~~~~d~~~~~~l~~~~--~iPI 281 (425)
T 3vcn_A 212 SVPKLFERAREVLGWDVHLLHDVHHRLTPIEAARLGKDLEPYRLFWLED-------S-VPAENQAGFRLIRQHT--TTPL 281 (425)
T ss_dssp TTHHHHHHHHHHHCSSSEEEEECTTCCCHHHHHHHHHHHGGGCCSEEEC-------C-SCCSSTTHHHHHHHHC--CSCE
T ss_pred HHHHHHHHHHHHcCCCCEEEEECCCCCCHHHHHHHHHHHHhcCCCEEEC-------C-CChhhHHHHHHHHhcC--CCCE
Confidence 3577899999987 578888743 45555 6778888851 1 1122456778888877 7999
Q ss_pred EEecCCCCHHHHHHHHHhC-cCEEEecH
Q 017781 280 FLDGGVRRGTDVFKALALG-ASGIFIGR 306 (366)
Q Consensus 280 i~~GGI~~~~dv~kalalG-Ad~V~igr 306 (366)
++++.+.+..|+.+++..| +|.|++--
T Consensus 282 a~dE~~~~~~~~~~~i~~~a~d~v~~k~ 309 (425)
T 3vcn_A 282 AVGEIFAHVWDAKQLIEEQLIDYLRATV 309 (425)
T ss_dssp EECTTCCSGGGTHHHHHTTCCSEECCCT
T ss_pred EeCCCcCCHHHHHHHHHcCCCCeEecCh
Confidence 9999999999999999988 89998864
|
| >4avf_A Inosine-5'-monophosphate dehydrogenase; oxidoreductase; 2.23A {Pseudomonas aeruginosa} | Back alignment and structure |
|---|
Probab=92.84 E-value=0.19 Score=50.37 Aligned_cols=250 Identities=15% Similarity=0.196 Sum_probs=105.2
Q ss_pred cccceeeeccccC-CCCCCccceeEc-CcccCCceEecccccccccCChhhHHHHHHHHHcCCceecCCCCCCCHHHHhc
Q 017781 42 AFSRILFRPRILI-DVSKIDMNTTVL-GFKISMPIMIAPTAMQKMAHPEGEYATARAASAAGTIMTLSSWSTSSVEEVAS 119 (366)
Q Consensus 42 ~f~~i~l~pr~l~-~~~~vd~st~l~-g~~l~~Pi~iApm~~~~l~~~~~e~~la~aa~~~G~~~~vs~~~~~~~e~i~~ 119 (366)
.||++.|+|..-. ..+++|++|.+- +..+..|++.|||...+ +..+|.+.++.|...++.. +.+.++.++
T Consensus 11 t~~d~~~~p~~~~~~~~~~~~~t~lt~~i~l~iPivsa~M~tVT------e~~lA~ala~~GGiGvI~~--~~~~e~~a~ 82 (490)
T 4avf_A 11 TFDDVLLIPGYSEVLPKDVSLKTRLTRGIELNIPLVSAAMDTVT------EARLAIAMAQEGGIGIIHK--NMGIEQQAA 82 (490)
T ss_dssp CGGGEEECCCCBCSCGGGSCCCEEEETTEEESSSEEECSCTTTC------SHHHHHHHHHHTSEEEECC--SSCHHHHHH
T ss_pred CcceEEEeCCCCcccccceeeecccccCcccCCCccccchhhhC------HHHHHHHHHHcCCCccccC--CCCHHHHHH
Confidence 5999999997653 345799999886 67899999999996543 6788888888887777752 455554332
Q ss_pred c------CCCceEEEeeecCCHHHHHHHHHHHHHcCCCEEEEecCCCCCc-chhHHHhhhc--CCCCccccc---ccccc
Q 017781 120 T------GPGIRFFQLYVYKDRNVVAQLVRRAERAGFKAIALTVDTPRLG-RREADIKNRF--TLPPFLTLK---NFQGL 187 (366)
Q Consensus 120 ~------~~~~~~~Qly~~~d~~~~~~~l~ra~~~G~~ai~vtvd~p~~g-~r~~d~~~~~--~~p~~~~~~---~~~~~ 187 (366)
. ......-....-.......+.++...+.++..+.|.=+--..| -..+|++... ..|..-.+. ++.-.
T Consensus 83 ~v~~vk~~~~~m~~~~v~v~~~~tv~ea~~~m~~~~~s~~pVvd~g~lvGIVt~rDl~~~~~~~~~V~~vMtp~~~~vtv 162 (490)
T 4avf_A 83 EVRKVKKHETAIVRDPVTVTPSTKIIELLQMAREYGFSGFPVVEQGELVGIVTGRDLRVKPNAGDTVAAIMTPKDKLVTA 162 (490)
T ss_dssp HHHHHHHCCC----------------------------------------------------------------------
T ss_pred HhhhhcccccCcccCceEeCCCCcHHHHHHHHHHhCCCEEEEEECCEEEEEEEhHHhhhccccCCcHHHHhccCCCCEEE
Confidence 1 1110000111111223345555566666666554421110001 0112222100 000000000 00000
Q ss_pred ccC-CCccc----cchhhH--HHhhhc--cCCCCCHHHHHHHHHh------cCCCEEEE--eccCH--HH-----HHcCC
Q 017781 188 DLG-KMDEA----NDSGLA--AYVAGQ--IDRSLSWKDVKWLQTI------TKLPILVK--GVLTA--ED-----VQAGA 243 (366)
Q Consensus 188 ~~~-~~~~~----~~~~~~--~~~~~~--~d~~~~~~~i~~lr~~------~~~pv~vK--~v~~~--~d-----~~aGa 243 (366)
... .+.+. ...... ..+... .-.-.+.+++.+.++. .+..+.+. ...+. .+ .++|+
T Consensus 163 ~~~~~l~ea~~~m~~~~i~~lpVVDe~g~lvGiIT~~Dil~~~~~p~a~kd~~grl~v~aavG~~~~~~~~a~~l~~aG~ 242 (490)
T 4avf_A 163 REGTPLEEMKAKLYENRIEKMLVVDENFYLRGLVTFRDIEKAKTYPLASKDEQGRLRVGAAVGTGADTGERVAALVAAGV 242 (490)
T ss_dssp --------------------------------------------CTTCCBCTTSCBCCEEEECSSTTHHHHHHHHHHTTC
T ss_pred CCCCcHHHHHHHHHHcCCCEEEEEcCCCcEEEEEehHHhhhhccCcchhhhccCcceeeeeeccccchHHHHHHHhhccc
Confidence 000 00000 000000 000000 0011122332222111 01122222 11221 11 88999
Q ss_pred cEEEEcCCCccCCCCCcchHHHHHHHHHHcCCCceEEEecCCCCHHHHHHHHHhCcCEEEec
Q 017781 244 AGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFIG 305 (366)
Q Consensus 244 d~I~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~i~vi~~GGI~~~~dv~kalalGAd~V~ig 305 (366)
|.|++....|. ....++.+.++++..+ ++||++ |.+.+.+++.++..+|||+|.+|
T Consensus 243 d~I~id~a~g~----~~~~~~~v~~i~~~~p-~~~Vi~-g~v~t~e~a~~l~~aGaD~I~vg 298 (490)
T 4avf_A 243 DVVVVDTAHGH----SKGVIERVRWVKQTFP-DVQVIG-GNIATAEAAKALAEAGADAVKVG 298 (490)
T ss_dssp SEEEEECSCCS----BHHHHHHHHHHHHHCT-TSEEEE-EEECSHHHHHHHHHTTCSEEEEC
T ss_pred ceEEecccCCc----chhHHHHHHHHHHHCC-CceEEE-eeeCcHHHHHHHHHcCCCEEEEC
Confidence 99998653331 3345678888888764 588888 77999999999999999999985
|
| >3ro6_B Putative chloromuconate cycloisomerase; TIM barrel; 2.20A {Methylococcus capsulatus} PDB: 3rit_A | Back alignment and structure |
|---|
Probab=92.80 E-value=0.3 Score=46.77 Aligned_cols=117 Identities=15% Similarity=0.100 Sum_probs=80.2
Q ss_pred CCHHHHHHHHHHHHHcCCCEEEEecCCCCCcchhHHHhhhcCCCCccccccccccccCCCccccchhhHHHhhhccCCCC
Q 017781 133 KDRNVVAQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLTLKNFQGLDLGKMDEANDSGLAAYVAGQIDRSL 212 (366)
Q Consensus 133 ~d~~~~~~~l~ra~~~G~~ai~vtvd~p~~g~r~~d~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~ 212 (366)
.+++.+.+.++++.+.|++++-+.+++. +..
T Consensus 139 ~~~~~~~~~a~~~~~~G~~~~K~K~G~~-------------------------------------------------~~~ 169 (356)
T 3ro6_B 139 KPVEETLAEAREHLALGFRVLKVKLCGD-------------------------------------------------EEQ 169 (356)
T ss_dssp CCHHHHHHHHHHHHHTTCCEEEEECCSC-------------------------------------------------HHH
T ss_pred CCHHHHHHHHHHHHHcCCCEEEEEeCCC-------------------------------------------------HHH
Confidence 5677777777777788999987765421 112
Q ss_pred CHHHHHHHHHhc--CCCEEEEec--cCHHH--------HHcCCcEEEEcCCCccCCCCCcchHHHHHHHHHHcCCCceEE
Q 017781 213 SWKDVKWLQTIT--KLPILVKGV--LTAED--------VQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVF 280 (366)
Q Consensus 213 ~~~~i~~lr~~~--~~pv~vK~v--~~~~d--------~~aGad~I~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~i~vi 280 (366)
+.+.++.+|+.+ +.++.+..- .+.++ .+.|+++|- +. ..+..++.+.++++.. .+||+
T Consensus 170 d~~~v~avR~~~g~~~~l~vDan~~~~~~~a~~~~~~l~~~~i~~iE-------qP-~~~~d~~~~~~l~~~~--~iPIa 239 (356)
T 3ro6_B 170 DFERLRRLHETLAGRAVVRVDPNQSYDRDGLLRLDRLVQELGIEFIE-------QP-FPAGRTDWLRALPKAI--RRRIA 239 (356)
T ss_dssp HHHHHHHHHHHHTTSSEEEEECTTCCCHHHHHHHHHHHHHTTCCCEE-------CC-SCTTCHHHHHTSCHHH--HHTEE
T ss_pred HHHHHHHHHHHhCCCCEEEEeCCCCCCHHHHHHHHHHHHhcCCCEEE-------CC-CCCCcHHHHHHHHhcC--CCCEE
Confidence 345567777775 466777632 34443 556777774 11 1223567777777766 69999
Q ss_pred EecCCCCHHHHHHHHHhC--cCEEEecHHH
Q 017781 281 LDGGVRRGTDVFKALALG--ASGIFIGRPV 308 (366)
Q Consensus 281 ~~GGI~~~~dv~kalalG--Ad~V~igr~~ 308 (366)
++.-+.+..|+.+++..| +|.|++--..
T Consensus 240 ~dE~~~~~~~~~~~~~~~~~~d~v~~k~~~ 269 (356)
T 3ro6_B 240 ADESLLGPADAFALAAPPAACGIFNIKLMK 269 (356)
T ss_dssp ESTTCCSHHHHHHHHSSSCSCSEEEECHHH
T ss_pred eCCcCCCHHHHHHHHhcCCcCCEEEEcccc
Confidence 999999999999999976 8999987543
|
| >3vnd_A TSA, tryptophan synthase alpha chain; psychrophilic enzyme, cold adaptation; HET: PE8; 2.60A {Shewanella frigidimarina} | Back alignment and structure |
|---|
Probab=92.75 E-value=0.31 Score=44.98 Aligned_cols=38 Identities=26% Similarity=0.228 Sum_probs=31.0
Q ss_pred CHHHHHHHHHhcCCCEEEEec-cCHHH----HHcCCcEEEEcC
Q 017781 213 SWKDVKWLQTITKLPILVKGV-LTAED----VQAGAAGIIVSN 250 (366)
Q Consensus 213 ~~~~i~~lr~~~~~pv~vK~v-~~~~d----~~aGad~I~vs~ 250 (366)
..+.++++|+.+++|+++-+. .++++ .++|||+++|..
T Consensus 194 ~~~~v~~vr~~~~~pv~vGfGI~~~e~~~~~~~~gADgvVVGS 236 (267)
T 3vnd_A 194 IENILTQLAEFNAPPPLLGFGIAEPEQVRAAIKAGAAGAISGS 236 (267)
T ss_dssp HHHHHHHHHTTTCCCEEECSSCCSHHHHHHHHHTTCSEEEECH
T ss_pred HHHHHHHHHHhcCCCEEEECCcCCHHHHHHHHHcCCCEEEECH
Confidence 356799999999999999865 46777 689999999843
|
| >1sjd_A N-acylamino acid racemase; lyase, isomerase; HET: NPG; 1.87A {Amycolatopsis SP} SCOP: c.1.11.2 d.54.1.1 PDB: 1sja_A* 1sjb_A* 1sjc_A* | Back alignment and structure |
|---|
Probab=92.74 E-value=1.1 Score=42.75 Aligned_cols=43 Identities=19% Similarity=0.342 Sum_probs=37.1
Q ss_pred chHHHHHHHHHHcCCCceEEEecCCCCHHHHHHHHHhC-cCEEEec
Q 017781 261 ATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALG-ASGIFIG 305 (366)
Q Consensus 261 ~~~~~l~~i~~~~~~~i~vi~~GGI~~~~dv~kalalG-Ad~V~ig 305 (366)
..++.+.++++.+ .+||++++.+.+..++.+++..| +|.|++-
T Consensus 220 ~~~~~~~~l~~~~--~ipIa~dE~~~~~~~~~~~i~~~~~d~v~ik 263 (368)
T 1sjd_A 220 EDVLGHAELARRI--QTPICLDESIVSARAAADAIKLGAVQIVNIK 263 (368)
T ss_dssp TCHHHHHHHHTTC--SSCEEESTTCCSHHHHHHHHHTTCCSEEEEC
T ss_pred hhHHHHHHHHHhC--CCCEEECCCcCCHHHHHHHHHcCCCCEEEec
Confidence 3577777887766 79999999999999999999988 7999983
|
| >2zad_A Muconate cycloisomerase; muconate lactonizing enzyme (MLE), TM0006, struct genomics, NPPSFA; HET: 1PE; 1.60A {Thermotoga maritima} PDB: 3deq_A 3der_A* 3des_A* 3dfy_A | Back alignment and structure |
|---|
Probab=92.72 E-value=1.5 Score=41.43 Aligned_cols=42 Identities=24% Similarity=0.203 Sum_probs=37.8
Q ss_pred chHHHHHHHHHHcCCCceEEEecCCCCHHHHHHHHHhC-cCEEEe
Q 017781 261 ATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALG-ASGIFI 304 (366)
Q Consensus 261 ~~~~~l~~i~~~~~~~i~vi~~GGI~~~~dv~kalalG-Ad~V~i 304 (366)
..++.+.++++.+ ++||++++.+.+..|+.+.+..| +|.|++
T Consensus 222 ~~~~~~~~l~~~~--~ipia~dE~~~~~~~~~~~i~~~~~d~v~i 264 (345)
T 2zad_A 222 EDIEGLKFVRFHS--PFPVAADESARTKFDVMRLVKEEAVDYVNI 264 (345)
T ss_dssp TCHHHHHHHHHHS--SSCEEESTTCCSHHHHHHHHHHTCCSEEEE
T ss_pred ccHHHHHHHHHhC--CCCEEEeCCcCCHHHHHHHHHhCCCCEEEE
Confidence 4577888888877 79999999999999999999988 899999
|
| >1tqj_A Ribulose-phosphate 3-epimerase; beta-alpha barrel epimerase, isomerase; 1.60A {Synechocystis SP} SCOP: c.1.2.2 | Back alignment and structure |
|---|
Probab=92.70 E-value=0.78 Score=41.11 Aligned_cols=124 Identities=19% Similarity=0.132 Sum_probs=79.7
Q ss_pred cCCHHHHHHHHHHHHHcCCCEEEEec-CCCCCcchhHHHhhhcCCCCccccccccccccCCCccccchhhHHHhhhccCC
Q 017781 132 YKDRNVVAQLVRRAERAGFKAIALTV-DTPRLGRREADIKNRFTLPPFLTLKNFQGLDLGKMDEANDSGLAAYVAGQIDR 210 (366)
Q Consensus 132 ~~d~~~~~~~l~ra~~~G~~ai~vtv-d~p~~g~r~~d~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~ 210 (366)
..|.....+.++++++.|++.+-+.+ |.+ | +| .-
T Consensus 13 a~D~~~l~~~i~~~~~~Gad~ihldi~DG~------------f-vp--------------------------------~~ 47 (230)
T 1tqj_A 13 SADFSRLGEEIKAVDEAGADWIHVDVMDGR------------F-VP--------------------------------NI 47 (230)
T ss_dssp GSCGGGHHHHHHHHHHTTCSEEEEEEEBSS------------S-SS--------------------------------CB
T ss_pred ecCHhHHHHHHHHHHHcCCCEEEEEEEecC------------C-Cc--------------------------------ch
Confidence 35677778889999999999875543 111 0 01 11
Q ss_pred CCCHHHHHHHHHhcCCCEEEEec-cCHH----H-HHcCCcEEEEcCCCccCCCCCcchHHHHHHHHHHcCCCceEEEecC
Q 017781 211 SLSWKDVKWLQTITKLPILVKGV-LTAE----D-VQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGG 284 (366)
Q Consensus 211 ~~~~~~i~~lr~~~~~pv~vK~v-~~~~----d-~~aGad~I~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~i~vi~~GG 284 (366)
.+..+.++.+|+.++.|+.+-.. .+++ . .++|||+|+++..-.. .......+..+++. .+.+..+=.
T Consensus 48 ~~g~~~v~~lr~~~~~~~~vhlmv~dp~~~i~~~~~aGadgv~vh~e~~~----~~~~~~~~~~i~~~---g~~~gv~~~ 120 (230)
T 1tqj_A 48 TIGPLIVDAIRPLTKKTLDVHLMIVEPEKYVEDFAKAGADIISVHVEHNA----SPHLHRTLCQIREL---GKKAGAVLN 120 (230)
T ss_dssp CBCHHHHHHHGGGCCSEEEEEEESSSGGGTHHHHHHHTCSEEEEECSTTT----CTTHHHHHHHHHHT---TCEEEEEEC
T ss_pred hhhHHHHHHHHhhcCCcEEEEEEccCHHHHHHHHHHcCCCEEEECccccc----chhHHHHHHHHHHc---CCcEEEEEe
Confidence 23457899999988888885543 4433 2 9999999998642000 11233445444432 344544446
Q ss_pred CCCHHHHHHHHHhCcCEEEecHH
Q 017781 285 VRRGTDVFKALALGASGIFIGRP 307 (366)
Q Consensus 285 I~~~~dv~kalalGAd~V~igr~ 307 (366)
..|+.+.++++..++|.|.+++-
T Consensus 121 p~t~~e~~~~~~~~~D~v~~msv 143 (230)
T 1tqj_A 121 PSTPLDFLEYVLPVCDLILIMSV 143 (230)
T ss_dssp TTCCGGGGTTTGGGCSEEEEESS
T ss_pred CCCcHHHHHHHHhcCCEEEEEEe
Confidence 67888889999899999988864
|
| >3flu_A DHDPS, dihydrodipicolinate synthase; TIM barrel, beta-alpha-barrel, amino-acid biosynthesis, diaminopimelate biosynthesis; 2.00A {Neisseria meningitidis serogroup B} SCOP: c.1.10.0 | Back alignment and structure |
|---|
Probab=92.70 E-value=5.4 Score=36.95 Aligned_cols=175 Identities=18% Similarity=0.186 Sum_probs=95.6
Q ss_pred ceEecccccccccCChhhHHHHHHHHHcCCceec--C---CCCCCCHHHHhc-------c-CC-CceEEEeeecCCHHHH
Q 017781 73 PIMIAPTAMQKMAHPEGEYATARAASAAGTIMTL--S---SWSTSSVEEVAS-------T-GP-GIRFFQLYVYKDRNVV 138 (366)
Q Consensus 73 Pi~iApm~~~~l~~~~~e~~la~aa~~~G~~~~v--s---~~~~~~~e~i~~-------~-~~-~~~~~Qly~~~d~~~~ 138 (366)
|.++.|+.-.+-...++-..+++-.-+.|+...+ + ++.+.+.+|..+ . .+ .|.+...- ..+.+..
T Consensus 13 ~a~vTPf~~dg~iD~~~l~~lv~~li~~Gv~gl~~~GttGE~~~Ls~~Er~~v~~~~~~~~~grvpviaGvg-~~~t~~a 91 (297)
T 3flu_A 13 VALITPMNQDGSIHYEQLRDLIDWHIENGTDGIVAVGTTGESATLSVEEHTAVIEAVVKHVAKRVPVIAGTG-ANNTVEA 91 (297)
T ss_dssp EECCCCBCTTSCBCHHHHHHHHHHHHHTTCCEEEESSTTTTGGGSCHHHHHHHHHHHHHHHTTSSCEEEECC-CSSHHHH
T ss_pred EeeeccCCCCCCcCHHHHHHHHHHHHHcCCCEEEeCccccCcccCCHHHHHHHHHHHHHHhCCCCcEEEeCC-CcCHHHH
Confidence 4455666422222223334666667778876443 3 334566665432 1 12 35666654 3466677
Q ss_pred HHHHHHHHHcCCCEEEEecCCCCCcchhHHHhhhcCCCCccccccccccccCCCccccchhhHHHhhhccCCCCCHHHHH
Q 017781 139 AQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLTLKNFQGLDLGKMDEANDSGLAAYVAGQIDRSLSWKDVK 218 (366)
Q Consensus 139 ~~~l~ra~~~G~~ai~vtvd~p~~g~r~~d~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~i~ 218 (366)
.++.++++++|++++.+. +|... + | ..+-..+..+
T Consensus 92 i~la~~a~~~Gadavlv~--~P~y~-~----------~--------------------------------~~~~l~~~f~ 126 (297)
T 3flu_A 92 IALSQAAEKAGADYTLSV--VPYYN-K----------P--------------------------------SQEGIYQHFK 126 (297)
T ss_dssp HHHHHHHHHTTCSEEEEE--CCCSS-C----------C--------------------------------CHHHHHHHHH
T ss_pred HHHHHHHHHcCCCEEEEC--CCCCC-C----------C--------------------------------CHHHHHHHHH
Confidence 788999999999998873 23210 0 0 0000123455
Q ss_pred HHHHhcCCCEEEEec-------cCHHH-HHc-C---CcEEEEcCCCccCCCCCcchHHHHHHHHHHcCCCceEEEecCCC
Q 017781 219 WLQTITKLPILVKGV-------LTAED-VQA-G---AAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVR 286 (366)
Q Consensus 219 ~lr~~~~~pv~vK~v-------~~~~d-~~a-G---ad~I~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~i~vi~~GGI~ 286 (366)
.+.+.+++||++=.+ .+++. .+. . +-+|.-+. ..+..+.++.+..++++.| .+|
T Consensus 127 ~va~a~~lPiilYn~P~~tg~~l~~~~~~~La~~pnivgiKdss----------gd~~~~~~~~~~~~~~f~v-~~G--- 192 (297)
T 3flu_A 127 TIAEATSIPMIIYNVPGRTVVSMTNDTILRLAEIPNIVGVKEAS----------GNIGSNIELINRAPEGFVV-LSG--- 192 (297)
T ss_dssp HHHHHCCSCEEEEECHHHHSSCCCHHHHHHHTTSTTEEEEEECS----------CCHHHHHHHHHHSCTTCEE-EEC---
T ss_pred HHHHhCCCCEEEEECCchhccCCCHHHHHHHHcCCCEEEEEeCC----------CCHHHHHHHHHhcCCCeEE-EEC---
Confidence 566667888887754 23333 111 1 11222111 2345555666666556665 445
Q ss_pred CHHHHHHHHHhCcCEEEecHH
Q 017781 287 RGTDVFKALALGASGIFIGRP 307 (366)
Q Consensus 287 ~~~dv~kalalGAd~V~igr~ 307 (366)
+..-++.++++||+++.-+..
T Consensus 193 ~d~~~l~~l~~G~~G~is~~a 213 (297)
T 3flu_A 193 DDHTALPFMLCGGHGVITVAA 213 (297)
T ss_dssp CGGGHHHHHHTTCCEEEESGG
T ss_pred cHHHHHHHHhCCCCEEEechH
Confidence 234577899999999987764
|
| >3tji_A Mandelate racemase/muconate lactonizing enzyme, N domain protein; enolase, dehydratase, enzyme function initiative, EFI, lyase; 1.80A {Enterobacter SP} | Back alignment and structure |
|---|
Probab=92.67 E-value=0.53 Score=46.25 Aligned_cols=140 Identities=16% Similarity=0.008 Sum_probs=88.7
Q ss_pred cCCHHHHHHHHHHHHHcCCCEEEEecCCCCCcchhHHHhhhcCCCCccccccccccccCCCccccchhhHHHhhhccCCC
Q 017781 132 YKDRNVVAQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLTLKNFQGLDLGKMDEANDSGLAAYVAGQIDRS 211 (366)
Q Consensus 132 ~~d~~~~~~~l~ra~~~G~~ai~vtvd~p~~g~r~~d~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~ 211 (366)
..+++.+.+.++++.+.|++++=+.++..... .+. ..-|.+.. .+ .+.....+..
T Consensus 152 ~~~~e~~~~~a~~~~~~G~~~iKlKvG~~~~~---~~~---~~~~~~~~---------------~~----~~~~~~~~~~ 206 (422)
T 3tji_A 152 GETLEALFASVDALIAQGYRHIRCQLGFYGGT---PSA---LHAPDNPT---------------PG----AWFDQQEYMS 206 (422)
T ss_dssp ESSHHHHHHHHHHHHHTTCSEEEEEESCCCBC---GGG---SCCCSSCC---------------SS----EECCHHHHHH
T ss_pred CCCHHHHHHHHHHHHHcCCCEEEEeeccCCcc---ccc---cccccccc---------------cc----ccccchhHHH
Confidence 46778888888888889999998877643110 000 00000000 00 0000000011
Q ss_pred CCHHHHHHHHHhc--CCCEEEEec--cCHHH--------HHcCCcEEEEcCCCccCCCCCcchHHHHHHHHHHcCCCceE
Q 017781 212 LSWKDVKWLQTIT--KLPILVKGV--LTAED--------VQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPV 279 (366)
Q Consensus 212 ~~~~~i~~lr~~~--~~pv~vK~v--~~~~d--------~~aGad~I~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~i~v 279 (366)
...+.++.+|+.+ +.+|.+..- .+.++ .+.|+++|- + ...+..++.+.++++.+ .+||
T Consensus 207 ~d~e~v~avR~avG~d~~L~vDaN~~~~~~~A~~~~~~Le~~~i~~iE-------q-P~~~~d~~~~~~l~~~~--~iPI 276 (422)
T 3tji_A 207 NTVEMFHALREKYGWKLHILHDVHERLFPQQAVQLAKQLEPFQPYFIE-------D-ILPPQQSAWLEQVRQQS--CVPL 276 (422)
T ss_dssp HHHHHHHHHHHHHCSSSEEEEECTTCSCHHHHHHHHHHHGGGCCSEEE-------C-CSCGGGGGGHHHHHHHC--CCCE
T ss_pred HHHHHHHHHHHHcCCCCEEEEECCCCCCHHHHHHHHHHHHhhCCCeEE-------C-CCChhhHHHHHHHHhhC--CCCE
Confidence 2456789999987 578888843 45554 567888774 1 11223566778888877 7999
Q ss_pred EEecCCCCHHHHHHHHHhC-cCEEEecH
Q 017781 280 FLDGGVRRGTDVFKALALG-ASGIFIGR 306 (366)
Q Consensus 280 i~~GGI~~~~dv~kalalG-Ad~V~igr 306 (366)
+++.-+.+..|+.+++..| +|.|++--
T Consensus 277 a~dE~~~~~~~~~~ll~~ga~d~v~~k~ 304 (422)
T 3tji_A 277 ALGELFNNPAEWHDLIVNRRIDFIRCHV 304 (422)
T ss_dssp EECTTCCSGGGTHHHHHTTCCSEECCCG
T ss_pred EEeCCcCCHHHHHHHHhcCCCCEEecCc
Confidence 9999999999999999987 79998854
|
| >3ffs_A Inosine-5-monophosphate dehydrogenase; beta-alpha barrel, TIM fold, oxidoreductase; 3.19A {Cryptosporidium parvum} | Back alignment and structure |
|---|
Probab=92.64 E-value=0.16 Score=49.59 Aligned_cols=60 Identities=27% Similarity=0.377 Sum_probs=45.7
Q ss_pred HHcCCcEEEEcCCCccCCCCCcchHHHHHHHHHHcCCCceEEEecCCCCHHHHHHHHHhCcCEEEec
Q 017781 239 VQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFIG 305 (366)
Q Consensus 239 ~~aGad~I~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~i~vi~~GGI~~~~dv~kalalGAd~V~ig 305 (366)
.++|+|.|++..+.|. .....+.+.++++.. .+||++ |++.+.+++.+++.+|||+|.+|
T Consensus 153 veaGvdvIvldta~G~----~~~~~e~I~~ik~~~--~i~Vi~-g~V~t~e~A~~a~~aGAD~I~vG 212 (400)
T 3ffs_A 153 VEAGVDVIVLDSAHGH----SLNIIRTLKEIKSKM--NIDVIV-GNVVTEEATKELIENGADGIKVG 212 (400)
T ss_dssp HHHTCSEEEECCSCCS----BHHHHHHHHHHHTTC--CCEEEE-EEECSHHHHHHHHHTTCSEEEEC
T ss_pred HHcCCCEEEEeCCCCC----cccHHHHHHHHHhcC--CCeEEE-eecCCHHHHHHHHHcCCCEEEEe
Confidence 8999999988543221 112356677776655 688887 77999999999999999999996
|
| >1dbt_A Orotidine 5'-phosphate decarboxylase; UMP, TIM barrel, lyase; HET: U5P; 2.40A {Bacillus subtilis} SCOP: c.1.2.3 | Back alignment and structure |
|---|
Probab=92.58 E-value=0.14 Score=46.40 Aligned_cols=58 Identities=22% Similarity=0.328 Sum_probs=41.5
Q ss_pred HHcCCcEEEEcCCCccCCCCCcchHHHHHHHHHHcCCCceEEEecCCCCHHH----------HHHHHHhCcCEEEecHHH
Q 017781 239 VQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTD----------VFKALALGASGIFIGRPV 308 (366)
Q Consensus 239 ~~aGad~I~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~i~vi~~GGI~~~~d----------v~kalalGAd~V~igr~~ 308 (366)
.+.|.++++.+. +.+.++++..+ ..+++++|||+-... ..+++..|||.+.+||++
T Consensus 152 ~~~G~~g~v~~~-------------~~i~~lr~~~~-~~~i~v~gGI~~~~~~~~dq~rv~tp~~a~~aGad~iVvGr~I 217 (239)
T 1dbt_A 152 EESGLDGVVCSV-------------HEAKAIYQAVS-PSFLTVTPGIRMSEDAANDQVRVATPAIAREKGSSAIVVGRSI 217 (239)
T ss_dssp HHTTCSEEECCG-------------GGHHHHTTTSC-TTCEEEECCBCCTTSCCTTCSSCBCHHHHHHTTCSEEEECHHH
T ss_pred HHhCCCEEEECH-------------HHHHHHHHhcC-CCcEEEeCCcCCCCCCccceeccCCHHHHHHcCCCEEEEChhh
Confidence 467888876432 23344554443 468999999986544 477889999999999998
Q ss_pred HH
Q 017781 309 VY 310 (366)
Q Consensus 309 l~ 310 (366)
+.
T Consensus 218 ~~ 219 (239)
T 1dbt_A 218 TK 219 (239)
T ss_dssp HT
T ss_pred cC
Confidence 64
|
| >3r4e_A Mandelate racemase/muconate lactonizing enzyme; enolase fold, mannonate dehydratase, D-mannonate, lyase; HET: CS2; 1.65A {Novosphingobium aromaticivorans} PDB: 2qjj_A 2qjn_A* 2qjm_A* | Back alignment and structure |
|---|
Probab=92.55 E-value=0.43 Score=46.77 Aligned_cols=149 Identities=13% Similarity=-0.006 Sum_probs=89.3
Q ss_pred cCCHHHHHHHHHHHHHcCCCEEEEecCCCCCcchhHHHhhhcCCCCccccccccccccCCCccccchhhHHHhhhccCCC
Q 017781 132 YKDRNVVAQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLTLKNFQGLDLGKMDEANDSGLAAYVAGQIDRS 211 (366)
Q Consensus 132 ~~d~~~~~~~l~ra~~~G~~ai~vtvd~p~~g~r~~d~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~ 211 (366)
..+++.+.+.++++.+.||+++=+.++.|.... ..+..-. +.... .......+...+.. ..+..
T Consensus 141 ~~~~e~~~~~a~~~~~~Gf~~~K~k~G~~~~~~-----~~g~~~~-~~~~~---------~~~~~~p~~~~~~~-~~~~~ 204 (418)
T 3r4e_A 141 GSDIAETVEAVGHYIDMGYKAIRAQTGVPGIKD-----AYGVGRG-KLYYE---------PADASLPSVTGWDT-RKALN 204 (418)
T ss_dssp ESSHHHHHHHHHHHHHTTCSEEEEEECCTTC---------------------------------CCCCEEEECH-HHHHH
T ss_pred CCCHHHHHHHHHHHHHcCCCEEEEecCCccccc-----ccccccc-ccccc---------cccccccccccccc-hhHHH
Confidence 467888888888888899999999887653100 0000000 00000 00000000000000 00011
Q ss_pred CCHHHHHHHHHhc--CCCEEEEec--cCHHH--------HHcCCcEEEEcCCCccCCCCCcchHHHHHHHHHHcCCCceE
Q 017781 212 LSWKDVKWLQTIT--KLPILVKGV--LTAED--------VQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPV 279 (366)
Q Consensus 212 ~~~~~i~~lr~~~--~~pv~vK~v--~~~~d--------~~aGad~I~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~i~v 279 (366)
...+.++.+|+.+ +.+|.+..- .+.++ .+.|+++|- +. ..+..++.+.++++.+ .+||
T Consensus 205 ~d~~~v~avR~a~G~d~~l~vDaN~~~~~~~A~~~~~~L~~~~i~~iE-------qP-~~~~d~~~~~~l~~~~--~iPI 274 (418)
T 3r4e_A 205 YVPKLFEELRKTYGFDHHLLHDGHHRYTPQEAANLGKMLEPYQLFWLE-------DC-TPAENQEAFRLVRQHT--VTPL 274 (418)
T ss_dssp HHHHHHHHHHHHHCSSSEEEEECTTCSCHHHHHHHHHHHGGGCCSEEE-------SC-SCCSSGGGGHHHHHHC--CSCE
T ss_pred HHHHHHHHHHHHcCCCCeEEEeCCCCCCHHHHHHHHHHHHhhCCCEEE-------CC-CCccCHHHHHHHHhcC--CCCE
Confidence 2456789999987 578888843 45554 677888885 11 1122456677888877 7999
Q ss_pred EEecCCCCHHHHHHHHHhC-cCEEEecH
Q 017781 280 FLDGGVRRGTDVFKALALG-ASGIFIGR 306 (366)
Q Consensus 280 i~~GGI~~~~dv~kalalG-Ad~V~igr 306 (366)
++++-+.+..|+.+++..| +|.|++--
T Consensus 275 a~dE~~~~~~~~~~~l~~~a~d~v~~k~ 302 (418)
T 3r4e_A 275 AVGEIFNTIWDAKDLIQNQLIDYIRATV 302 (418)
T ss_dssp EECTTCCSGGGTHHHHHTTCCSEECCCT
T ss_pred EEcCCcCCHHHHHHHHHcCCCCeEecCc
Confidence 9999999999999999988 89998864
|
| >2qq6_A Mandelate racemase/muconate lactonizing enzyme- like protein; enolase, Mg ION, PSI-2, NYSGXRC, structural genomics; 2.90A {Rubrobacter xylanophilus dsm 9941} | Back alignment and structure |
|---|
Probab=92.44 E-value=0.57 Score=45.61 Aligned_cols=84 Identities=14% Similarity=0.088 Sum_probs=63.3
Q ss_pred CHHHHHHHHHhc--CCCEEEEec--cCHHH--------HHcCCcEEEEcCCCccCCCCCcchHHHHHHHHHHcCCCceEE
Q 017781 213 SWKDVKWLQTIT--KLPILVKGV--LTAED--------VQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVF 280 (366)
Q Consensus 213 ~~~~i~~lr~~~--~~pv~vK~v--~~~~d--------~~aGad~I~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~i~vi 280 (366)
..+.++.+|+.+ +++|.+..- .+.++ .+.|+++|-- ...+..++.+.++++.+ ++||+
T Consensus 196 ~~e~v~avRea~G~d~~l~vDan~~~~~~~a~~~~~~l~~~~i~~iEe--------P~~~~d~~~~~~l~~~~--~iPIa 265 (410)
T 2qq6_A 196 MVARVAAVREAVGPEVEVAIDMHGRFDIPSSIRFARAMEPFGLLWLEE--------PTPPENLDALAEVRRST--STPIC 265 (410)
T ss_dssp HHHHHHHHHHHHCSSSEEEEECTTCCCHHHHHHHHHHHGGGCCSEEEC--------CSCTTCHHHHHHHHTTC--SSCEE
T ss_pred HHHHHHHHHHhcCCCCEEEEECCCCCCHHHHHHHHHHHhhcCCCeEEC--------CCChhhHHHHHHHHhhC--CCCEE
Confidence 456788999887 578888743 45555 5678887741 01223577888888776 79999
Q ss_pred EecCCCCHHHHHHHHHhC-cCEEEecH
Q 017781 281 LDGGVRRGTDVFKALALG-ASGIFIGR 306 (366)
Q Consensus 281 ~~GGI~~~~dv~kalalG-Ad~V~igr 306 (366)
+++.+.+..++.+++..| +|.|++--
T Consensus 266 ~dE~~~~~~~~~~~i~~~~~d~v~ik~ 292 (410)
T 2qq6_A 266 AGENVYTRFDFRELFAKRAVDYVMPDV 292 (410)
T ss_dssp ECTTCCSHHHHHHHHHTTCCSEECCBH
T ss_pred eCCCcCCHHHHHHHHHcCCCCEEecCc
Confidence 999999999999999987 89999853
|
| >1rpx_A Protein (ribulose-phosphate 3-epimerase); chloroplast, calvin cycle, oxidative pentose PH pathway; 2.30A {Solanum tuberosum} SCOP: c.1.2.2 | Back alignment and structure |
|---|
Probab=92.41 E-value=1.4 Score=39.01 Aligned_cols=124 Identities=16% Similarity=0.133 Sum_probs=78.0
Q ss_pred EeeecCCHHHHHHHHHHHHHcCCCEEEEec-CCCCCcchhHHHhhhcCCCCccccccccccccCCCccccchhhHHHhhh
Q 017781 128 QLYVYKDRNVVAQLVRRAERAGFKAIALTV-DTPRLGRREADIKNRFTLPPFLTLKNFQGLDLGKMDEANDSGLAAYVAG 206 (366)
Q Consensus 128 Qly~~~d~~~~~~~l~ra~~~G~~ai~vtv-d~p~~g~r~~d~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 206 (366)
......|.....+.++.+.+.|++.+-+.+ |.+. +|
T Consensus 15 p~i~a~d~~~~~~~i~~~~~~G~d~i~l~~~dg~f-------------~~------------------------------ 51 (230)
T 1rpx_A 15 PSILSANFSKLGEQVKAIEQAGCDWIHVDVMDGRF-------------VP------------------------------ 51 (230)
T ss_dssp EBGGGSCGGGHHHHHHHHHHTTCCCEEEEEEBSSS-------------SS------------------------------
T ss_pred EEeecCCHHHHHHHHHHHHHCCCCEEEEeeccCCc-------------cc------------------------------
Confidence 334457777788889999999998876654 2110 00
Q ss_pred ccCCCCCHHHHHHHHHhcCCCEEEEeccC-HHH-----HHcCCcEEEEcCC--CccCCCCCcchHHHHHHHHHHcCCCce
Q 017781 207 QIDRSLSWKDVKWLQTITKLPILVKGVLT-AED-----VQAGAAGIIVSNH--GARQLDYVPATIMALEEVVKATQGRIP 278 (366)
Q Consensus 207 ~~d~~~~~~~i~~lr~~~~~pv~vK~v~~-~~d-----~~aGad~I~vs~~--gg~~~~~~~~~~~~l~~i~~~~~~~i~ 278 (366)
......+.++++++.++.|+.+-...+ +++ .++|+|+|.++.. .. ....+.+..+.+. .+.
T Consensus 52 --~~~~~~~~i~~l~~~~~~~~~v~l~vnd~~~~v~~~~~~Gad~v~vh~~~~~~------~~~~~~~~~~~~~---g~~ 120 (230)
T 1rpx_A 52 --NITIGPLVVDSLRPITDLPLDVHLMIVEPDQRVPDFIKAGADIVSVHCEQSST------IHLHRTINQIKSL---GAK 120 (230)
T ss_dssp --CBCCCHHHHHHHGGGCCSCEEEEEESSSHHHHHHHHHHTTCSEEEEECSTTTC------SCHHHHHHHHHHT---TSE
T ss_pred --ccccCHHHHHHHHhccCCcEEEEEEecCHHHHHHHHHHcCCCEEEEEecCccc------hhHHHHHHHHHHc---CCc
Confidence 011346788999998777877765433 332 8899999998664 21 1223444444432 345
Q ss_pred EEEecCCCCHHHHHHHHHhCcCEEEec
Q 017781 279 VFLDGGVRRGTDVFKALALGASGIFIG 305 (366)
Q Consensus 279 vi~~GGI~~~~dv~kalalGAd~V~ig 305 (366)
++.+---.+..+.++++..++|.|.+.
T Consensus 121 ig~~~~p~t~~e~~~~~~~~~d~vl~~ 147 (230)
T 1rpx_A 121 AGVVLNPGTPLTAIEYVLDAVDLVLIM 147 (230)
T ss_dssp EEEEECTTCCGGGGTTTTTTCSEEEEE
T ss_pred EEEEeCCCCCHHHHHHHHhhCCEEEEE
Confidence 555533456777788888899998544
|
| >2v82_A 2-dehydro-3-deoxy-6-phosphogalactonate aldolase; lyase, kdpgal; HET: KDP; 2.1A {Escherichia coli} PDB: 2v81_A* | Back alignment and structure |
|---|
Probab=92.34 E-value=0.47 Score=41.53 Aligned_cols=76 Identities=20% Similarity=0.213 Sum_probs=51.9
Q ss_pred HHHHHHHHHhcCCCEEEEe--ccCHHH----HHcCCcEEEEcCCCccCCCCCcchHHHHHHHHHHcCCCceEEEecCCCC
Q 017781 214 WKDVKWLQTITKLPILVKG--VLTAED----VQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRR 287 (366)
Q Consensus 214 ~~~i~~lr~~~~~pv~vK~--v~~~~d----~~aGad~I~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~i~vi~~GGI~~ 287 (366)
.+.++.+++.++.|+++.. +.+.++ .++|+|+|.+.. ...+.+ +.++.. ..+++.. +.+
T Consensus 46 ~~~i~~i~~~~~~~l~vg~g~~~~~~~i~~a~~~Gad~V~~~~----------~~~~~~-~~~~~~--g~~~~~g--~~t 110 (212)
T 2v82_A 46 EQSIPAIVDAYGDKALIGAGTVLKPEQVDALARMGCQLIVTPN----------IHSEVI-RRAVGY--GMTVCPG--CAT 110 (212)
T ss_dssp HHHHHHHHHHHTTTSEEEEECCCSHHHHHHHHHTTCCEEECSS----------CCHHHH-HHHHHT--TCEEECE--ECS
T ss_pred HHHHHHHHHhCCCCeEEEeccccCHHHHHHHHHcCCCEEEeCC----------CCHHHH-HHHHHc--CCCEEee--cCC
Confidence 4567888887788888853 344444 899999996321 122333 333344 3555543 899
Q ss_pred HHHHHHHHHhCcCEEEe
Q 017781 288 GTDVFKALALGASGIFI 304 (366)
Q Consensus 288 ~~dv~kalalGAd~V~i 304 (366)
..++.++..+|+|.|.+
T Consensus 111 ~~e~~~a~~~G~d~v~v 127 (212)
T 2v82_A 111 ATEAFTALEAGAQALKI 127 (212)
T ss_dssp HHHHHHHHHTTCSEEEE
T ss_pred HHHHHHHHHCCCCEEEE
Confidence 99999999999999997
|
| >3my9_A Muconate cycloisomerase; structural genomics, PSI-2, protein structure INI NEW YORK SGX research center for structural genomics, nysgx; 2.20A {Azorhizobium caulinodans} | Back alignment and structure |
|---|
Probab=92.14 E-value=0.59 Score=45.04 Aligned_cols=84 Identities=13% Similarity=0.056 Sum_probs=58.7
Q ss_pred HHHHHHHHHhc--CCCEEEEec--cCHHH--------HHcCCcEEEEcCCCccCCCCCcchHHHHHHHHHHcCCCceEEE
Q 017781 214 WKDVKWLQTIT--KLPILVKGV--LTAED--------VQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFL 281 (366)
Q Consensus 214 ~~~i~~lr~~~--~~pv~vK~v--~~~~d--------~~aGad~I~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~i~vi~ 281 (366)
.+.++.+|+.+ +.++.+..- .+.++ .+.|+++|- + ...+..++.+.++++.. .+||++
T Consensus 178 ~~~v~avR~~~g~~~~l~vDan~~~~~~~A~~~~~~l~~~~i~~iE-------q-P~~~~d~~~~~~l~~~~--~ipIa~ 247 (377)
T 3my9_A 178 LRILETMRGEFGERIDLRLDFNQALTPFGAMKILRDVDAFRPTFIE-------Q-PVPRRHLDAMAGFAAAL--DTPILA 247 (377)
T ss_dssp HHHHHHHHHHHGGGSEEEEECTTCCCTTTHHHHHHHHHTTCCSCEE-------C-CSCTTCHHHHHHHHHHC--SSCEEE
T ss_pred HHHHHHHHHHhCCCCeEEEeCCCCcCHHHHHHHHHHHhhcCCCEEE-------C-CCCccCHHHHHHHHHhC--CCCEEE
Confidence 45677777765 466776632 22222 455666663 1 11223577888888877 799999
Q ss_pred ecCCCCHHHHHHHHHhC-cCEEEecHH
Q 017781 282 DGGVRRGTDVFKALALG-ASGIFIGRP 307 (366)
Q Consensus 282 ~GGI~~~~dv~kalalG-Ad~V~igr~ 307 (366)
+.-+.+..|+.+++..| +|.|++--.
T Consensus 248 dE~~~~~~~~~~~i~~~~~d~v~~k~~ 274 (377)
T 3my9_A 248 DESCFDAVDLMEVVRRQAADAISVKIM 274 (377)
T ss_dssp STTCSSHHHHHHHHHHTCCSEEECCHH
T ss_pred CCccCCHHHHHHHHHcCCCCEEEeccc
Confidence 99999999999999987 899988643
|
| >4fxs_A Inosine-5'-monophosphate dehydrogenase; structural genomics, IMPDH, IMP, mycophenolic acid, MOA; HET: IMP MOA; 2.24A {Vibrio cholerae o1 biovar el tor} | Back alignment and structure |
|---|
Probab=92.08 E-value=0.27 Score=49.41 Aligned_cols=243 Identities=16% Similarity=0.216 Sum_probs=130.2
Q ss_pred cccceeeeccccC-CCCCCccceeEc-CcccCCceEecccccccccCChhhHHHHHHHHHcCCceecCCCCCCCHHHHhc
Q 017781 42 AFSRILFRPRILI-DVSKIDMNTTVL-GFKISMPIMIAPTAMQKMAHPEGEYATARAASAAGTIMTLSSWSTSSVEEVAS 119 (366)
Q Consensus 42 ~f~~i~l~pr~l~-~~~~vd~st~l~-g~~l~~Pi~iApm~~~~l~~~~~e~~la~aa~~~G~~~~vs~~~~~~~e~i~~ 119 (366)
.||++.|+|..-. ..+++|++|.+- +..+..|++.|||...+ +..+|.+.++.|...+++ .+.+.++.++
T Consensus 12 t~~d~~~~p~~~~~~~~~~~~~t~lt~~i~l~iPivsa~MdtVT------e~~ma~a~a~~GGiGvI~--~n~s~e~qa~ 83 (496)
T 4fxs_A 12 TFDDVLLVPAHSTVLPNTADLRTRLTKNIALNIPMVSASMDTVT------EARLAIALAQEGGIGFIH--KNMSIEQQAA 83 (496)
T ss_dssp CGGGEEECCCCCCCCGGGCBCCEEEETTEEESSSEEECCCTTTC------SHHHHHHHHHHTCEEEEC--SSSCHHHHHH
T ss_pred CcccEEEecCccccccccccccceeccccccCCCceecCcchhh------HHHHHHHHHHcCCcceec--CCCCHHHHHH
Confidence 4999999997653 345899999886 67899999999996543 678888888888877775 3555554322
Q ss_pred -------cCC----CceEEEeeecCCHHHHHHHHHHHHHcCCCEEEEecCCCC-Cc-chhHHHhhhcCCCCccccccccc
Q 017781 120 -------TGP----GIRFFQLYVYKDRNVVAQLVRRAERAGFKAIALTVDTPR-LG-RREADIKNRFTLPPFLTLKNFQG 186 (366)
Q Consensus 120 -------~~~----~~~~~Qly~~~d~~~~~~~l~ra~~~G~~ai~vtvd~p~-~g-~r~~d~~~~~~~p~~~~~~~~~~ 186 (366)
... .+.++ .......+.++...+.++..+.|.=+.-. .| -..+|++... .....+..+..
T Consensus 84 ~V~~Vk~~~~~m~~d~v~v-----~~~~tv~ea~~~m~~~~~s~~PVvd~~~~lvGiVt~rDL~~~~--~~~~~v~diM~ 156 (496)
T 4fxs_A 84 QVHQVKIFEAGVVTHPVTV-----RPEQTIADVMELTHYHGFAGFPVVTENNELVGIITGRDVRFVT--DLTKSVAAVMT 156 (496)
T ss_dssp HHHHHHHCCC--CBCCCCB-----CSSSBHHHHHHHHTSSCCCEEEEECSSSBEEEEEEHHHHTTCC--CTTSBGGGTSE
T ss_pred HHHhccccccccccCceEE-----CCCCCHHHHHHHHHHcCCcEEEEEccCCEEEEEEEHHHHhhcc--cCCCcHHHHhc
Confidence 111 22222 22234566777777888888776532100 01 1234444111 00001110000
Q ss_pred -cc-cCCCcc-ccchhhHHH-----------hhhc--cCCCCCHHHHHHHHHh------cCCCEEEEec--c---CHHH-
Q 017781 187 -LD-LGKMDE-ANDSGLAAY-----------VAGQ--IDRSLSWKDVKWLQTI------TKLPILVKGV--L---TAED- 238 (366)
Q Consensus 187 -~~-~~~~~~-~~~~~~~~~-----------~~~~--~d~~~~~~~i~~lr~~------~~~pv~vK~v--~---~~~d- 238 (366)
.. ...+.. .......+. +... ...-.+.+++....+. .+..+.+... . ..+.
T Consensus 157 p~~~~vtv~~~~~l~ea~~~m~~~~i~~lpVVDe~G~l~GiIT~~DIl~~~~~p~a~~d~~grL~v~aavG~~~d~~~~a 236 (496)
T 4fxs_A 157 PKERLATVKEGATGAEVQEKMHKARVEKILVVNDEFQLKGMITAKDFHKAESKPNACKDEQGRLRVGAAVGAAPGNEERV 236 (496)
T ss_dssp EGGGCCEEECC----CGGGTCC---CCCEEEECTTSBCCEEECCC-----CCCTTCCBCTTSCBCCEEECCSSSCCHHHH
T ss_pred CCCCCEEECCCCCHHHHHHHHHHcCCCEEEEEcCCCCEEEeehHhHHHHhhcccchhhhcccceeeeeeeccccchHHHH
Confidence 00 000000 000000000 0000 0011133333222111 1123333321 1 1222
Q ss_pred ---HHcCCcEEEEcCCCccCCCCCcchHHHHHHHHHHcCCCceEEEecCCCCHHHHHHHHHhCcCEEEec
Q 017781 239 ---VQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFIG 305 (366)
Q Consensus 239 ---~~aGad~I~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~i~vi~~GGI~~~~dv~kalalGAd~V~ig 305 (366)
.++|+|.|++....| .....++.+.++++..+ ++||++ |.+.+.+++.++..+|||+|.+|
T Consensus 237 ~~l~~aG~d~I~id~a~g----~~~~~~~~i~~ir~~~p-~~~Vi~-g~v~t~e~a~~l~~aGaD~I~Vg 300 (496)
T 4fxs_A 237 KALVEAGVDVLLIDSSHG----HSEGVLQRIRETRAAYP-HLEIIG-GNVATAEGARALIEAGVSAVKVG 300 (496)
T ss_dssp HHHHHTTCSEEEEECSCT----TSHHHHHHHHHHHHHCT-TCCEEE-EEECSHHHHHHHHHHTCSEEEEC
T ss_pred HHHHhccCceEEeccccc----cchHHHHHHHHHHHHCC-CceEEE-cccCcHHHHHHHHHhCCCEEEEC
Confidence 889999999875432 12345678888888764 688888 77999999999999999999986
|
| >3mwc_A Mandelate racemase/muconate lactonizing protein; enolase, structural genomics, protein structure initiative, nysgrc; 1.80A {Kosmotoga olearia} | Back alignment and structure |
|---|
Probab=92.00 E-value=1.5 Score=42.52 Aligned_cols=44 Identities=18% Similarity=0.173 Sum_probs=38.5
Q ss_pred hHHHHHHHHHHcCCCceEEEecCCCCHHHHHHHHHhC-cCEEEecHH
Q 017781 262 TIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALG-ASGIFIGRP 307 (366)
Q Consensus 262 ~~~~l~~i~~~~~~~i~vi~~GGI~~~~dv~kalalG-Ad~V~igr~ 307 (366)
.++.+.++++.+ .+||+++.-+.+..|+.+++..| +|.|++--.
T Consensus 243 d~~~~~~l~~~~--~iPIa~dE~~~~~~~~~~~~~~~~~d~v~~k~~ 287 (400)
T 3mwc_A 243 ALLDLKELGERI--ETPICLDESLISSRVAEFVAKLGISNIWNIKIQ 287 (400)
T ss_dssp CHHHHHHHHHHS--SSCEEESTTCCSHHHHHHHHHTTCCSEEEECHH
T ss_pred hHHHHHHHHhhC--CCCEEEeCCcCCHHHHHHHHhcCCCCEEEEcch
Confidence 577888888877 79999999999999999999987 799998643
|
| >1jcn_A Inosine monophosphate dehydrogenase I; IMPD, IMPDH, guanine nucleotide synthesis, oxidoreductase; HET: CPR; 2.50A {Homo sapiens} SCOP: c.1.5.1 d.37.1.1 PDB: 1jr1_A* 1nf7_A* 1b3o_A* 1nfb_A* | Back alignment and structure |
|---|
Probab=91.97 E-value=0.3 Score=49.17 Aligned_cols=61 Identities=18% Similarity=0.274 Sum_probs=47.7
Q ss_pred HHcCCcEEEEcCCCccCCCCCcchHHHHHHHHHHcCCCceEEEecCCCCHHHHHHHHHhCcCEEEec
Q 017781 239 VQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFIG 305 (366)
Q Consensus 239 ~~aGad~I~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~i~vi~~GGI~~~~dv~kalalGAd~V~ig 305 (366)
.++|+|+|.++...|. ....++.+.++++.++ ++||++ |++.+.+++.++..+|||++.+|
T Consensus 264 ~~aG~d~v~i~~~~G~----~~~~~~~i~~i~~~~~-~~pvi~-~~v~t~~~a~~l~~aGad~I~vg 324 (514)
T 1jcn_A 264 TQAGVDVIVLDSSQGN----SVYQIAMVHYIKQKYP-HLQVIG-GNVVTAAQAKNLIDAGVDGLRVG 324 (514)
T ss_dssp HHTTCSEEEECCSCCC----SHHHHHHHHHHHHHCT-TCEEEE-EEECSHHHHHHHHHHTCSEEEEC
T ss_pred HHcCCCEEEeeccCCc----chhHHHHHHHHHHhCC-CCceEe-cccchHHHHHHHHHcCCCEEEEC
Confidence 8899999998543331 1234678888888773 688886 77999999999999999999773
|
| >3v3w_A Starvation sensing protein RSPA; enolase, enzyme function initiative, EFI, lyase; HET: NHE; 1.40A {Cellvibrio japonicus} PDB: 3v4b_A* 4f4r_A 3qkf_A* 3qke_A* 3p93_A* 3ow1_A 3pk7_A* 3rgt_A* 3bsm_A | Back alignment and structure |
|---|
Probab=91.93 E-value=0.71 Score=45.34 Aligned_cols=84 Identities=8% Similarity=-0.121 Sum_probs=63.9
Q ss_pred CHHHHHHHHHhc--CCCEEEEec--cCHHH--------HHcCCcEEEEcCCCccCCCCCcchHHHHHHHHHHcCCCceEE
Q 017781 213 SWKDVKWLQTIT--KLPILVKGV--LTAED--------VQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVF 280 (366)
Q Consensus 213 ~~~~i~~lr~~~--~~pv~vK~v--~~~~d--------~~aGad~I~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~i~vi 280 (366)
..+.++.+|+.+ +.+|.+..- .+.++ .+.|+++|-- . ..+..++.+.++++.+ .+||+
T Consensus 212 d~e~v~avR~avG~d~~l~vDaN~~~~~~~A~~~~~~L~~~~i~~iEq-------P-~~~~d~~~~~~l~~~~--~iPIa 281 (424)
T 3v3w_A 212 IPDVFAAVRKEFGPDIHLLHDVHHRLTPIEAARLGKALEPYHLFWMED-------A-VPAENQESFKLIRQHT--TTPLA 281 (424)
T ss_dssp HHHHHHHHHHHHCSSSEEEEECTTCCCHHHHHHHHHHHGGGCCSEEEC-------C-SCCSSTTHHHHHHHHC--CSCEE
T ss_pred HHHHHHHHHHHcCCCCcEEEeCCCCCCHHHHHHHHHHHHhcCCCEEEC-------C-CChHhHHHHHHHHhhC--CCCEE
Confidence 456789999987 578888843 45555 6778888851 1 1122456778888877 79999
Q ss_pred EecCCCCHHHHHHHHHhC-cCEEEecH
Q 017781 281 LDGGVRRGTDVFKALALG-ASGIFIGR 306 (366)
Q Consensus 281 ~~GGI~~~~dv~kalalG-Ad~V~igr 306 (366)
+++.+.+..|+.++++.| +|.|++--
T Consensus 282 ~dE~~~~~~~~~~~i~~ga~d~v~~k~ 308 (424)
T 3v3w_A 282 VGEVFNSIHDCRELIQNQWIDYIRTTI 308 (424)
T ss_dssp ECTTCCSGGGTHHHHHTTCCSEECCCT
T ss_pred EccCcCCHHHHHHHHHcCCCCeEeecc
Confidence 999999999999999998 79998864
|
| >3usb_A Inosine-5'-monophosphate dehydrogenase; structural genomics, center for structural genomics of infec diseases, csgid, TIM barrel, CBS-domain; HET: MSE IMP; 2.38A {Bacillus anthracis} PDB: 3tsd_A* 3tsb_A* | Back alignment and structure |
|---|
Probab=91.74 E-value=0.6 Score=47.06 Aligned_cols=243 Identities=16% Similarity=0.166 Sum_probs=133.5
Q ss_pred cccceeeeccccC-CCCCCccceeEc-CcccCCceEecccccccccCChhhHHHHHHHHHcCCceecCCCCCCCHHHHh-
Q 017781 42 AFSRILFRPRILI-DVSKIDMNTTVL-GFKISMPIMIAPTAMQKMAHPEGEYATARAASAAGTIMTLSSWSTSSVEEVA- 118 (366)
Q Consensus 42 ~f~~i~l~pr~l~-~~~~vd~st~l~-g~~l~~Pi~iApm~~~~l~~~~~e~~la~aa~~~G~~~~vs~~~~~~~e~i~- 118 (366)
.||++.|+|..-. ..+++|++|.+- +..+..|++.|||...+ +..+|.+.++.|...++.. +.++++..
T Consensus 36 t~~d~~~~p~~~~~~~~~~~~~t~lt~~i~l~iPivsa~MdtvT------e~~lAia~a~~GgiGvIh~--~~~~~~q~~ 107 (511)
T 3usb_A 36 TFDDVLLVPAKSDVLPREVSVKTVLSESLQLNIPLISAGMDTVT------EADMAIAMARQGGLGIIHK--NMSIEQQAE 107 (511)
T ss_dssp CGGGEEECCCCCCCCTTTSBCCEEEETTEEESSSEEECSCTTTC------SHHHHHHHHHHTCEEEECS--SSCHHHHHH
T ss_pred ceEEEEEECCcccccccceEeeeEeecccccCCCccccCchhhc------HHHHHHHHHhcCCceeecc--cCCHHHHHH
Confidence 5999999997642 446799999876 57899999999996433 7788888888888877753 44454322
Q ss_pred ---c---cC----CCceEEEeeecCCHHHHHHHHHHHHHcCCCEEEEecC--CC-CCc-chhHHHhhhcCCCCccccccc
Q 017781 119 ---S---TG----PGIRFFQLYVYKDRNVVAQLVRRAERAGFKAIALTVD--TP-RLG-RREADIKNRFTLPPFLTLKNF 184 (366)
Q Consensus 119 ---~---~~----~~~~~~Qly~~~d~~~~~~~l~ra~~~G~~ai~vtvd--~p-~~g-~r~~d~~~~~~~p~~~~~~~~ 184 (366)
+ .. +.+.+ + .......+.++...+.++..+.|.=+ .- ..| -..+|++... .....+..+
T Consensus 108 ~V~~V~~~~~~m~~d~v~--l---~~~~tv~ea~~~m~~~~~s~~pVvd~g~~~~lvGiVt~rDl~~~~--~~~~~V~~v 180 (511)
T 3usb_A 108 QVDKVKRSESGVISDPFF--L---TPEHQVYDAEHLMGKYRISGVPVVNNLDERKLVGIITNRDMRFIQ--DYSIKISDV 180 (511)
T ss_dssp HHHHHHTSSSCSSSSCCC--B---CTTSBHHHHHHHHHHHCCSEEEEESCTTTCBEEEEEEHHHHTTCC--CSSSBHHHH
T ss_pred HHHHhhccccccccCCEE--E---CCCCCHHHHHHHHHHcCCcEEEEEecCCCCEEEEEEEehHhhhhc--cCCCcHHHh
Confidence 1 11 11222 2 22334566777788888988877532 10 011 1234443210 000000000
Q ss_pred ccc-ccCCCcc-ccchhhHHHhhhc-------cC------CCCCHHH-HHHHHHh-------cCCCEEEEeccCH---HH
Q 017781 185 QGL-DLGKMDE-ANDSGLAAYVAGQ-------ID------RSLSWKD-VKWLQTI-------TKLPILVKGVLTA---ED 238 (366)
Q Consensus 185 ~~~-~~~~~~~-~~~~~~~~~~~~~-------~d------~~~~~~~-i~~lr~~-------~~~pv~vK~v~~~---~d 238 (366)
..- ....+.. .......+.+... .| .-.+.++ ++.+... ..+++.+....+. +.
T Consensus 181 M~~~~~vtv~~~~~l~eal~~m~~~~i~~lpVVDe~g~l~GiIT~~Dil~~~~~p~a~~D~~~rl~V~aavg~~~d~~er 260 (511)
T 3usb_A 181 MTKEQLITAPVGTTLSEAEKILQKYKIEKLPLVDNNGVLQGLITIKDIEKVIEFPNSAKDKQGRLLVGAAVGVTADAMTR 260 (511)
T ss_dssp CCCCCCCCEETTCCHHHHHHHHHHHTCSEEEEECTTSBEEEEEEHHHHHHHHHCTTCCBCTTSCBCCEEEECSSTTHHHH
T ss_pred cccCCCEEECCCCCHHHHHHHHHHcCCCEEEEEeCCCCEeeeccHHHHHHhhhcccchhhhccceeeeeeeeeccchHHH
Confidence 000 0000000 0000000000000 00 1124444 3443321 1233444433222 22
Q ss_pred ----HHcCCcEEEEcCCCccCCCCCcchHHHHHHHHHHcCCCceEEEecCCCCHHHHHHHHHhCcCEEEec
Q 017781 239 ----VQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFIG 305 (366)
Q Consensus 239 ----~~aGad~I~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~i~vi~~GGI~~~~dv~kalalGAd~V~ig 305 (366)
.++|+|.|++....| .....++.+.++++..+ ++||++ |+|.+.+++.++..+|||+|.+|
T Consensus 261 a~aLveaGvd~I~Id~a~g----~~~~v~~~i~~i~~~~~-~~~vi~-g~v~t~e~a~~~~~aGad~i~vg 325 (511)
T 3usb_A 261 IDALVKASVDAIVLDTAHG----HSQGVIDKVKEVRAKYP-SLNIIA-GNVATAEATKALIEAGANVVKVG 325 (511)
T ss_dssp HHHHHHTTCSEEEEECSCT----TSHHHHHHHHHHHHHCT-TSEEEE-EEECSHHHHHHHHHHTCSEEEEC
T ss_pred HHHHHhhccceEEeccccc----chhhhhhHHHHHHHhCC-CceEEe-eeeccHHHHHHHHHhCCCEEEEC
Confidence 899999999865332 12345678888887763 577775 78999999999999999999874
|
| >3r0u_A Enzyme of enolase superfamily; structural genomics, putative epimerase, PSI-biolog YORK structural genomics research consortium; HET: MSE TAR; 1.90A {Francisella philomiragia subsp} PDB: 3px5_A* 3r0k_A* 3r10_A 3r11_A 3r1z_A* | Back alignment and structure |
|---|
Probab=91.61 E-value=1.9 Score=41.54 Aligned_cols=117 Identities=18% Similarity=0.108 Sum_probs=76.9
Q ss_pred CCHHHHHHHHHHHHHcCCCEEEEecCCCCCcchhHHHhhhcCCCCccccccccccccCCCccccchhhHHHhhhccCCCC
Q 017781 133 KDRNVVAQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLTLKNFQGLDLGKMDEANDSGLAAYVAGQIDRSL 212 (366)
Q Consensus 133 ~d~~~~~~~l~ra~~~G~~ai~vtvd~p~~g~r~~d~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~ 212 (366)
.+++.+.+.++++.+.|++++=+.++.. +..
T Consensus 141 ~~~e~~~~~a~~~~~~Gf~~~KlK~g~~-------------------------------------------------~~~ 171 (379)
T 3r0u_A 141 GNVAETIQNIQNGVEANFTAIKVKTGAD-------------------------------------------------FNR 171 (379)
T ss_dssp CCHHHHHHHHHHHHHTTCCEEEEECSSC-------------------------------------------------HHH
T ss_pred CCHHHHHHHHHHHHHcCCCEEeeecCCC-------------------------------------------------HHH
Confidence 4667666777777778999887655421 111
Q ss_pred CHHHHHHHHHhc--CCCEEEEec--cCHHH--------HH--cCCcEEEEcCCCccCCCCCcchHHHHHHHHHHcCCCce
Q 017781 213 SWKDVKWLQTIT--KLPILVKGV--LTAED--------VQ--AGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIP 278 (366)
Q Consensus 213 ~~~~i~~lr~~~--~~pv~vK~v--~~~~d--------~~--aGad~I~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~i~ 278 (366)
+.+.++.+|+.+ +.++.+..- .+.++ .+ .++++|- + ...+..++.+.++++.. .+|
T Consensus 172 d~~~v~avR~a~g~~~~L~vDaN~~w~~~~A~~~~~~l~~~~~~l~~iE-------e-P~~~~d~~~~~~l~~~~--~iP 241 (379)
T 3r0u_A 172 DIQLLKALDNEFSKNIKFRFDANQGWNLAQTKQFIEEINKYSLNVEIIE-------Q-PVKYYDIKAMAEITKFS--NIP 241 (379)
T ss_dssp HHHHHHHHHHHCCTTSEEEEECTTCCCHHHHHHHHHHHHTSCCCEEEEE-------C-CSCTTCHHHHHHHHHHC--SSC
T ss_pred HHHHHHHHHHhcCCCCeEEEeCCCCcCHHHHHHHHHHHhhcCCCcEEEE-------C-CCCcccHHHHHHHHhcC--CCC
Confidence 344566666665 355666522 33433 33 3555553 1 11223577888888877 799
Q ss_pred EEEecCCCCHHHHHHHHHhC-cCEEEecHHH
Q 017781 279 VFLDGGVRRGTDVFKALALG-ASGIFIGRPV 308 (366)
Q Consensus 279 vi~~GGI~~~~dv~kalalG-Ad~V~igr~~ 308 (366)
|.++.-+.+..|+.+++..| +|.|++--..
T Consensus 242 Ia~dE~~~~~~~~~~~i~~~a~d~v~~k~~~ 272 (379)
T 3r0u_A 242 VVADESVFDAKDAERVIDEQACNMINIKLAK 272 (379)
T ss_dssp EEESTTCSSHHHHHHHHHTTCCSEEEECHHH
T ss_pred EEeCCccCCHHHHHHHHHcCCCCEEEECccc
Confidence 99999999999999999988 7999986543
|
| >3q94_A Fructose-bisphosphate aldolase, class II; structural genomics, center for structural genomics of infec diseases, csgid, alpha-beta barrel; HET: 13P; 2.30A {Bacillus anthracis} SCOP: c.1.10.0 | Back alignment and structure |
|---|
Probab=91.51 E-value=3.5 Score=38.29 Aligned_cols=100 Identities=19% Similarity=0.221 Sum_probs=68.9
Q ss_pred HHcCCcEEEEcC---CCccCCCCCcchHHHHHHHHHHcCCCceEEEecCCCCH-HHHHHHHHhCcCEEEecHHHHHHhhh
Q 017781 239 VQAGAAGIIVSN---HGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRG-TDVFKALALGASGIFIGRPVVYSLAA 314 (366)
Q Consensus 239 ~~aGad~I~vs~---~gg~~~~~~~~~~~~l~~i~~~~~~~i~vi~~GGI~~~-~dv~kalalGAd~V~igr~~l~~l~~ 314 (366)
.+.|+|.+-++. ||-+. ....-.++.|.+|.+.+ ++|+..=||=..+ +++.||+.+|..-|-|++-+.++...
T Consensus 169 ~~TgvD~LAvaiGt~HG~Y~-~~p~Ld~~~L~~I~~~v--~vpLVlHGgSG~~~e~i~~ai~~Gv~KiNi~Tdl~~a~~~ 245 (288)
T 3q94_A 169 EATGIDCLAPALGSVHGPYK-GEPNLGFAEMEQVRDFT--GVPLVLHGGTGIPTADIEKAISLGTSKINVNTENQIEFTK 245 (288)
T ss_dssp HHHCCSEEEECSSCBSSCCS-SSCCCCHHHHHHHHHHH--CSCEEECCCTTCCHHHHHHHHHTTEEEEEECHHHHHHHHH
T ss_pred HHHCCCEEEEEcCcccCCcC-CCCccCHHHHHHHHHhc--CCCEEEeCCCCCCHHHHHHHHHcCCeEEEEChHHHHHHHH
Confidence 578999999874 55331 11123678999999998 6999998875555 55889999999999999977554211
Q ss_pred -------c-----CH-HHHHHHHHHHHHHHHHHHHHcCCC
Q 017781 315 -------E-----GE-KGVRRVLEMLREEFELAMALSGCR 341 (366)
Q Consensus 315 -------~-----G~-~gv~~~~~~l~~el~~~m~~~G~~ 341 (366)
. .+ .-+....+.+++.++..|+.+|+.
T Consensus 246 ~~r~~~~~~~~~~dpr~~~~~~~~a~~~~v~~~~~~~gs~ 285 (288)
T 3q94_A 246 AVREVLNKDQEVYDPRKFIGPGRDAIKATVIGKIREFGSN 285 (288)
T ss_dssp HHHHHHHHCSSCCCTHHHHHHHHHHHHHHHHHHHHHHTCT
T ss_pred HHHHHHHhCCCcCCHHHHHHHHHHHHHHHHHHHHHHhCCC
Confidence 0 01 123333456777778888888864
|
| >1vrd_A Inosine-5'-monophosphate dehydrogenase; TM1347, structural G joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.18A {Thermotoga maritima} SCOP: c.1.5.1 | Back alignment and structure |
|---|
Probab=91.33 E-value=0.38 Score=48.08 Aligned_cols=61 Identities=23% Similarity=0.332 Sum_probs=48.8
Q ss_pred HHcCCcEEEEcCCCccCCCCCcchHHHHHHHHHHcCCCceEEEecCCCCHHHHHHHHHhCcCEEEec
Q 017781 239 VQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFIG 305 (366)
Q Consensus 239 ~~aGad~I~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~i~vi~~GGI~~~~dv~kalalGAd~V~ig 305 (366)
.++|+|.|.++...|. ....++.+.++++.++ ++||++ |++.+.+++.++..+|||++.+|
T Consensus 246 ~~aGvd~v~i~~~~G~----~~~~~e~i~~i~~~~p-~~pvi~-g~~~t~e~a~~l~~~G~d~I~v~ 306 (494)
T 1vrd_A 246 VKAGVDVIVIDTAHGH----SRRVIETLEMIKADYP-DLPVVA-GNVATPEGTEALIKAGADAVKVG 306 (494)
T ss_dssp HHTTCSEEEECCSCCS----SHHHHHHHHHHHHHCT-TSCEEE-EEECSHHHHHHHHHTTCSEEEEC
T ss_pred HHhCCCEEEEEecCCc----hHHHHHHHHHHHHHCC-CceEEe-CCcCCHHHHHHHHHcCCCEEEEc
Confidence 8999999998653331 2346788888888874 588887 77899999999999999999984
|
| >1xky_A Dihydrodipicolinate synthase; TIM barrel, , lysine biosynthesis;spine, lyase; 1.94A {Bacillus anthracis} SCOP: c.1.10.1 PDB: 1xl9_A 3hij_A* | Back alignment and structure |
|---|
Probab=91.15 E-value=9.5 Score=35.37 Aligned_cols=178 Identities=17% Similarity=0.248 Sum_probs=95.6
Q ss_pred ceEecccccccccCChhhHHHHHHHHHcCCceec--C---CCCCCCHHHHhc-------c-CC-CceEEEeeecCCHHHH
Q 017781 73 PIMIAPTAMQKMAHPEGEYATARAASAAGTIMTL--S---SWSTSSVEEVAS-------T-GP-GIRFFQLYVYKDRNVV 138 (366)
Q Consensus 73 Pi~iApm~~~~l~~~~~e~~la~aa~~~G~~~~v--s---~~~~~~~e~i~~-------~-~~-~~~~~Qly~~~d~~~~ 138 (366)
|-++.|+.-.+-...++-..+++-.-+.|+...+ + +..+.+.+|-.+ . .+ .|.+...- ..+.+..
T Consensus 18 ~a~vTPf~~dg~iD~~~l~~lv~~li~~Gv~gl~v~GtTGE~~~Ls~eEr~~v~~~~~~~~~grvpViaGvg-~~~t~~a 96 (301)
T 1xky_A 18 TAMVTPFDINGNIDFAKTTKLVNYLIDNGTTAIVVGGTTGESPTLTSEEKVALYRHVVSVVDKRVPVIAGTG-SNNTHAS 96 (301)
T ss_dssp EECCCCBCTTSSBCHHHHHHHHHHHHHTTCCEEEESSTTTTGGGSCHHHHHHHHHHHHHHHTTSSCEEEECC-CSCHHHH
T ss_pred EeeECcCCCCCCcCHHHHHHHHHHHHHcCCCEEEECccccChhhCCHHHHHHHHHHHHHHhCCCceEEeCCC-CCCHHHH
Confidence 4445565322222223334666666778875543 3 334566665432 1 22 35666654 3456667
Q ss_pred HHHHHHHHHcCCCEEEEecCCCCCcchhHHHhhhcCCCCccccccccccccCCCccccchhhHHHhhhccCCCCCHHHHH
Q 017781 139 AQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLTLKNFQGLDLGKMDEANDSGLAAYVAGQIDRSLSWKDVK 218 (366)
Q Consensus 139 ~~~l~ra~~~G~~ai~vtvd~p~~g~r~~d~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~i~ 218 (366)
.++.+.|+++|++++.+. +|.. ++ | ...-..+..+
T Consensus 97 i~la~~A~~~Gadavlv~--~P~y-~~----------~--------------------------------s~~~l~~~f~ 131 (301)
T 1xky_A 97 IDLTKKATEVGVDAVMLV--APYY-NK----------P--------------------------------SQEGMYQHFK 131 (301)
T ss_dssp HHHHHHHHHTTCSEEEEE--CCCS-SC----------C--------------------------------CHHHHHHHHH
T ss_pred HHHHHHHHhcCCCEEEEc--CCCC-CC----------C--------------------------------CHHHHHHHHH
Confidence 788999999999998874 2321 00 0 0000123345
Q ss_pred HHHHhcCCCEEEEec-------cCHHH----HHc-CCcEEEEcCCCccCCCCCcchHHHHHHHHHHcCCCceEEEecCCC
Q 017781 219 WLQTITKLPILVKGV-------LTAED----VQA-GAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVR 286 (366)
Q Consensus 219 ~lr~~~~~pv~vK~v-------~~~~d----~~a-Gad~I~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~i~vi~~GGI~ 286 (366)
.+-+.+++||++=.+ ++++. .+. .+-+|.-+. ..+..+.++.+..++++.| .+|.
T Consensus 132 ~va~a~~lPiilYn~P~~tg~~l~~~~~~~La~~pnIvgiKdss----------gd~~~~~~~~~~~~~~f~v-~~G~-- 198 (301)
T 1xky_A 132 AIAESTPLPVMLYNVPGRSIVQISVDTVVRLSEIENIVAIKDAG----------GDVLTMTEIIEKTADDFAV-YSGD-- 198 (301)
T ss_dssp HHHHTCSSCEEEEECHHHHSSCCCHHHHHHHHTSTTEEEEEECS----------SCHHHHHHHHHHSCTTCEE-EESS--
T ss_pred HHHHhcCCCEEEEeCccccCCCCCHHHHHHHHcCCCEEEEEcCC----------CCHHHHHHHHHhcCCCeEE-EECc--
Confidence 556667788887754 23343 111 122222211 1344555666666545555 4552
Q ss_pred CHHHHHHHHHhCcCEEEecHHHHH
Q 017781 287 RGTDVFKALALGASGIFIGRPVVY 310 (366)
Q Consensus 287 ~~~dv~kalalGAd~V~igr~~l~ 310 (366)
..-++.++++||+++.-+..-++
T Consensus 199 -d~~~l~~l~~G~~G~is~~an~~ 221 (301)
T 1xky_A 199 -DGLTLPAMAVGAKGIVSVASHVI 221 (301)
T ss_dssp -GGGHHHHHHTTCCEEEESTHHHH
T ss_pred -HHHHHHHHHcCCCEEEcCHHHhC
Confidence 34478889999999988875443
|
| >3t6c_A RSPA, putative MAND family dehydratase; enolase, mannonate dehydratase related protein, enzyme funct intitiative, lyase, hydro-lyases; HET: GCO; 1.60A {Pantoea ananatis} PDB: 3tw9_A 3twa_A 3twb_A* | Back alignment and structure |
|---|
Probab=91.14 E-value=1.5 Score=43.25 Aligned_cols=84 Identities=8% Similarity=-0.069 Sum_probs=63.5
Q ss_pred CHHHHHHHHHhc--CCCEEEEec--cCHHH--------HHcCCcEEEEcCCCccCCCCCcchHHHHHHHHHHcCCCceEE
Q 017781 213 SWKDVKWLQTIT--KLPILVKGV--LTAED--------VQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVF 280 (366)
Q Consensus 213 ~~~~i~~lr~~~--~~pv~vK~v--~~~~d--------~~aGad~I~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~i~vi 280 (366)
+.+.++.+|+.+ +.+|.+..- .+.++ .+.|+++|- +. ..+..++.+.++++.+ .+||+
T Consensus 226 d~~~v~avR~a~G~d~~L~vDaN~~~~~~~A~~~~~~L~~~~i~~iE-------eP-~~~~d~~~~~~l~~~~--~iPIa 295 (440)
T 3t6c_A 226 IPRLFDHLRNKLGFSVELLHDAHERITPINAIHMAKALEPYQLFFLE-------DP-VAPENTEWLKMLRQQS--STPIA 295 (440)
T ss_dssp HHHHHHHHHHHHCSSSEEEEECTTCSCHHHHHHHHHHTGGGCCSEEE-------CS-SCGGGGGGHHHHHHHC--CSCEE
T ss_pred HHHHHHHHHHhcCCCCeEEEECCCCCCHHHHHHHHHHhhhcCCCEEE-------CC-CChhhHHHHHHHHhhc--CCCEE
Confidence 356688999987 578888854 45554 567777774 11 1223566778888877 79999
Q ss_pred EecCCCCHHHHHHHHHhC-cCEEEecH
Q 017781 281 LDGGVRRGTDVFKALALG-ASGIFIGR 306 (366)
Q Consensus 281 ~~GGI~~~~dv~kalalG-Ad~V~igr 306 (366)
++.-+.+..|+.+++..| +|.|++--
T Consensus 296 ~dE~~~~~~~~~~~i~~~a~d~v~~k~ 322 (440)
T 3t6c_A 296 MGELFVNVNEWKPLIDNKLIDYIRCHI 322 (440)
T ss_dssp ECTTCCSHHHHHHHHHTTCCSEECCCG
T ss_pred eCcccCCHHHHHHHHHcCCccceeech
Confidence 999999999999999987 79998864
|
| >3gd6_A Muconate cycloisomerase; structural genomics, NYSGXRC, target 9375A, divergent enolase, lyase, PSI-2; 1.60A {Oceanobacillus iheyensis HTE831} PDB: 2oqy_A 3es8_A 3es7_A 3fyy_A 3hpf_A* | Back alignment and structure |
|---|
Probab=91.12 E-value=3.3 Score=39.93 Aligned_cols=115 Identities=13% Similarity=0.027 Sum_probs=77.8
Q ss_pred CCHHHHHHHHHHHHHcCCCEEEEecCCCCCcchhHHHhhhcCCCCccccccccccccCCCccccchhhHHHhhhccCCCC
Q 017781 133 KDRNVVAQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLTLKNFQGLDLGKMDEANDSGLAAYVAGQIDRSL 212 (366)
Q Consensus 133 ~d~~~~~~~l~ra~~~G~~ai~vtvd~p~~g~r~~d~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~ 212 (366)
.+++.+.+.++++.+.|++++-+.+++. +..
T Consensus 141 ~~~e~~~~~a~~~~~~G~~~~KiKvG~~-------------------------------------------------~~~ 171 (391)
T 3gd6_A 141 EEVESNLDVVRQKLEQGFDVFRLYVGKN-------------------------------------------------LDA 171 (391)
T ss_dssp THHHHHHHHHHHHHHTTCCEEEEECSSC-------------------------------------------------HHH
T ss_pred CCHHHHHHHHHHHHHcCCCEEEEeeCCC-------------------------------------------------HHH
Confidence 4566677777777788999987765431 111
Q ss_pred CHHHHHHHHHhc--CCCEE-EEec--cCHHH--------HHcCC--cEEEEcCCCccCCCCCcchHHHHHHHHHHcCCCc
Q 017781 213 SWKDVKWLQTIT--KLPIL-VKGV--LTAED--------VQAGA--AGIIVSNHGARQLDYVPATIMALEEVVKATQGRI 277 (366)
Q Consensus 213 ~~~~i~~lr~~~--~~pv~-vK~v--~~~~d--------~~aGa--d~I~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~i 277 (366)
+.+.++.+|+.+ +.++. +..- .+.++ .+.|+ ++|- +. ..+..++.+.++++.+ .+
T Consensus 172 d~~~v~avR~a~g~~~~l~~vDan~~~~~~~A~~~~~~l~~~~i~~~~iE-------qP-~~~~d~~~~~~l~~~~--~i 241 (391)
T 3gd6_A 172 DEEFLSRVKEEFGSRVRIKSYDFSHLLNWKDAHRAIKRLTKYDLGLEMIE-------SP-APRNDFDGLYQLRLKT--DY 241 (391)
T ss_dssp HHHHHHHHHHHHGGGCEEEEEECTTCSCHHHHHHHHHHHTTCCSSCCEEE-------CC-SCTTCHHHHHHHHHHC--SS
T ss_pred HHHHHHHHHHHcCCCCcEEEecCCCCcCHHHHHHHHHHHHhcCCCcceec-------CC-CChhhHHHHHHHHHHc--CC
Confidence 345566677665 45666 6532 34443 45677 6664 11 1223578888888887 79
Q ss_pred eEEEecCCCCHHHHHHHHHhC-cCEEEecHHH
Q 017781 278 PVFLDGGVRRGTDVFKALALG-ASGIFIGRPV 308 (366)
Q Consensus 278 ~vi~~GGI~~~~dv~kalalG-Ad~V~igr~~ 308 (366)
|| +..+.+..|+.+++..| +|.|++--..
T Consensus 242 PI--dE~~~~~~~~~~~~~~~~~d~v~~k~~~ 271 (391)
T 3gd6_A 242 PI--SEHVWSFKQQQEMIKKDAIDIFNISPVF 271 (391)
T ss_dssp CE--EEECCCHHHHHHHHHHTCCSEEEECHHH
T ss_pred Cc--CCCCCCHHHHHHHHHcCCCCEEEECchh
Confidence 99 88999999999999987 7999998644
|
| >2c6q_A GMP reductase 2; TIM barrel, metal-binding, NADP, oxidoreductase, potassium; HET: IMP NDP; 1.70A {Homo sapiens} PDB: 2bzn_A* 2a7r_A* 2ble_A* 2bwg_A* | Back alignment and structure |
|---|
Probab=91.10 E-value=0.79 Score=43.88 Aligned_cols=61 Identities=21% Similarity=0.232 Sum_probs=46.0
Q ss_pred HHc--CCcEEEEcCCCccCCCCCcchHHHHHHHHHHcCCCceEEEecCCCCHHHHHHHHHhCcCEEEec
Q 017781 239 VQA--GAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFIG 305 (366)
Q Consensus 239 ~~a--Gad~I~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~i~vi~~GGI~~~~dv~kalalGAd~V~ig 305 (366)
.+. |+|.|.++...| .....++.+.++++..+ ++||++ |++.+.+|+.++..+|||+|.++
T Consensus 127 ~~~~~g~~~i~i~~~~g----~~~~~~~~i~~lr~~~~-~~~vi~-g~v~t~e~A~~a~~aGaD~I~v~ 189 (351)
T 2c6q_A 127 LEAIPQVKYICLDVANG----YSEHFVEFVKDVRKRFP-QHTIMA-GNVVTGEMVEELILSGADIIKVG 189 (351)
T ss_dssp HHHCTTCCEEEEECSCT----TBHHHHHHHHHHHHHCT-TSEEEE-EEECSHHHHHHHHHTTCSEEEEC
T ss_pred HhccCCCCEEEEEecCC----CcHHHHHHHHHHHHhcC-CCeEEE-EeCCCHHHHHHHHHhCCCEEEEC
Confidence 444 999988764322 12335678888887763 588886 77899999999999999999775
|
| >2ze3_A DFA0005; organic waste LEFT-OVER decomposition, alkaliphilic, ICL/PEPM superfamily, alpha-ketoglutarate LIG isomerase; HET: AKG; 1.65A {Deinococcus ficus} | Back alignment and structure |
|---|
Probab=91.08 E-value=4.3 Score=37.40 Aligned_cols=59 Identities=24% Similarity=0.355 Sum_probs=43.0
Q ss_pred HHcCCcEEEEcCCCccCCCCCcchHHHHHHHHHHcCCCceEEEec--CCCCHHHHHHHHHhCcCEEEecHHHHHH
Q 017781 239 VQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDG--GVRRGTDVFKALALGASGIFIGRPVVYS 311 (366)
Q Consensus 239 ~~aGad~I~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~i~vi~~G--GI~~~~dv~kalalGAd~V~igr~~l~~ 311 (366)
.++|||.|.+-+ +++.+.+.++.+.+ ++|+-+.. +..+ +.+.-++|.+.|..+...+.+
T Consensus 178 ~eAGAd~i~~e~---------~~~~~~~~~i~~~~--~~P~n~~~~~~~~~---~~eL~~lGv~~v~~~~~~~ra 238 (275)
T 2ze3_A 178 ADAGADGIFVPL---------ALQSQDIRALADAL--RVPLNVMAFPGSPV---PRALLDAGAARVSFGQSLMLA 238 (275)
T ss_dssp HHTTCSEEECTT---------CCCHHHHHHHHHHC--SSCEEEECCTTSCC---HHHHHHTTCSEEECTTHHHHH
T ss_pred HHCCCCEEEECC---------CCCHHHHHHHHHhc--CCCEEEecCCCCCC---HHHHHHcCCcEEEEChHHHHH
Confidence 899999998632 45678888898888 57875553 3334 344446899999999877665
|
| >4ab4_A Xenobiotic reductase B; oxidoreductase, OLD yellow enzyme; HET: FMN TNL EDO; 1.50A {Pseudomonas putida KT2440} | Back alignment and structure |
|---|
Probab=90.99 E-value=2.9 Score=40.13 Aligned_cols=88 Identities=13% Similarity=0.071 Sum_probs=45.9
Q ss_pred ceeEcCcccCCceEecccccccccCChh---hHHHHHHHHHcCCceecCCCCCCCHHHHhccCCCceEEEeeecCCHHHH
Q 017781 62 NTTVLGFKISMPIMIAPTAMQKMAHPEG---EYATARAASAAGTIMTLSSWSTSSVEEVASTGPGIRFFQLYVYKDRNVV 138 (366)
Q Consensus 62 st~l~g~~l~~Pi~iApm~~~~l~~~~~---e~~la~aa~~~G~~~~vs~~~~~~~e~i~~~~~~~~~~Qly~~~d~~~~ 138 (366)
..+|.+.++++-|++|||+-.. ..+++ +..+.--.+++..++++.+....+.+ ....+. -.-+|....-+-.
T Consensus 7 P~~ig~~~lkNRiv~aPm~~~~-a~~~g~pt~~~~~yY~~rA~~GLIite~~~V~~~--g~~~~~--~~gi~~d~~i~~~ 81 (362)
T 4ab4_A 7 PIKLGDLQLPNRIIMAPLTRCR-ADEGRVPNALMAEYYVQRASAGLILSEATSVSPM--GVGYPD--TPGIWNDEQVRGW 81 (362)
T ss_dssp CEEETTEEESCSEEECCCCCCC-CBTTTBCCHHHHHHHHHTTTSSEEEEEEEESSGG--GCCSTT--CCBCSSHHHHHHH
T ss_pred CeeECCEEeeCccEECCccCCc-cCCCCCCCHHHHHHHHHHHhhCEEeeeeeEeccc--ccCCCC--CCCcCCHHHHHHH
Confidence 3578889999999999997532 22332 23222222333345566544333321 111221 1113322223446
Q ss_pred HHHHHHHHHcCCCEEE
Q 017781 139 AQLVRRAERAGFKAIA 154 (366)
Q Consensus 139 ~~~l~ra~~~G~~ai~ 154 (366)
+++.+.+.+.|++.++
T Consensus 82 k~l~~avH~~G~~i~~ 97 (362)
T 4ab4_A 82 NNVTKAVHAAGGRIFL 97 (362)
T ss_dssp HHHHHHHHHTTCCEEE
T ss_pred HHHHHHHHhcCCEEEE
Confidence 6777888888988643
|
| >3f4w_A Putative hexulose 6 phosphate synthase; humps, malonate, lyase; 1.65A {Salmonella typhimurium} SCOP: c.1.2.0 | Back alignment and structure |
|---|
Probab=90.71 E-value=1.6 Score=37.91 Aligned_cols=37 Identities=22% Similarity=0.299 Sum_probs=30.0
Q ss_pred CHHHHHHHHHhc-CCCEEEEeccCHHH----HHcCCcEEEEc
Q 017781 213 SWKDVKWLQTIT-KLPILVKGVLTAED----VQAGAAGIIVS 249 (366)
Q Consensus 213 ~~~~i~~lr~~~-~~pv~vK~v~~~~d----~~aGad~I~vs 249 (366)
.++.++++++.. ++|+++-+..+.++ .++|+|++++.
T Consensus 146 ~~~~i~~l~~~~~~~~i~~~gGI~~~~~~~~~~~Gad~vvvG 187 (211)
T 3f4w_A 146 PIDDLITMLKVRRKARIAVAGGISSQTVKDYALLGPDVVIVG 187 (211)
T ss_dssp SHHHHHHHHHHCSSCEEEEESSCCTTTHHHHHTTCCSEEEEC
T ss_pred CHHHHHHHHHHcCCCcEEEECCCCHHHHHHHHHcCCCEEEEC
Confidence 577889999986 88998887656555 88999999884
|
| >1jub_A Dihydroorotate dehydrogenase A; homodimer, alpha-beta barrel, flavoprotein, mutant enzyme, oxidoreductase; HET: FMN; 1.40A {Lactococcus lactis} SCOP: c.1.4.1 PDB: 1ovd_A* 1jue_A* 1dor_A* 2bsl_A* 2bx7_A* 2dor_A* 1jqv_A* 1jrb_A* 1jrc_A* 1jqx_A* | Back alignment and structure |
|---|
Probab=90.68 E-value=0.59 Score=43.57 Aligned_cols=155 Identities=15% Similarity=0.138 Sum_probs=83.4
Q ss_pred CCceEecccccccccCChhhHHHHHHHHHcCCc-ee-cCCC--C-----C--CCHH---HH----hccCCCceEEEeeec
Q 017781 71 SMPIMIAPTAMQKMAHPEGEYATARAASAAGTI-MT-LSSW--S-----T--SSVE---EV----ASTGPGIRFFQLYVY 132 (366)
Q Consensus 71 ~~Pi~iApm~~~~l~~~~~e~~la~aa~~~G~~-~~-vs~~--~-----~--~~~e---~i----~~~~~~~~~~Qly~~ 132 (366)
..|+++.-++. .++.-...++.+.+.|.. ++ ++-. . . .+.+ ++ ++....|.++.+...
T Consensus 93 ~~p~~~~i~g~----~~~~~~~~a~~~~~~g~d~~iein~~~P~~~g~~~~g~~~e~~~~iv~~vr~~~~~Pv~vKi~~~ 168 (311)
T 1jub_A 93 EGPIFFSIAGM----SAAENIAMLKKIQESDFSGITELNLSCPNVPGEPQLAYDFEATEKLLKEVFTFFTKPLGVKLPPY 168 (311)
T ss_dssp SSCCEEEECCS----SHHHHHHHHHHHHHSCCCSEEEEESCCCCSSSCCCGGGCHHHHHHHHHHHTTTCCSCEEEEECCC
T ss_pred CCCEEEEcCCC----CHHHHHHHHHHHHhcCCCeEEEEeccCCCCCCcccccCCHHHHHHHHHHHHHhcCCCEEEEECCC
Confidence 46776654421 123335777778888865 33 3210 0 0 1222 22 222235788888766
Q ss_pred CCHHHHHHHHHHHHHcCCCEEEEecCCCCCcchhHHHhhhcCCCCccccccccccccCCCccccchhhHHHhhhccCCCC
Q 017781 133 KDRNVVAQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLTLKNFQGLDLGKMDEANDSGLAAYVAGQIDRSL 212 (366)
Q Consensus 133 ~d~~~~~~~l~ra~~~G~~ai~vtvd~p~~g~r~~d~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~ 212 (366)
.+.+...++++.++++|++++.++ +....+.. -|.... ..... ..... .+ ++.....+.
T Consensus 169 ~~~~~~~~~a~~~~~~G~d~i~v~-~~~~~g~~-i~~~~~-----~~~~~---------~~~~~-gG----~sg~~~~~~ 227 (311)
T 1jub_A 169 FDLVHFDIMAEILNQFPLTYVNSV-NSIGNGLF-IDPEAE-----SVVIK---------PKDGF-GG----IGGAYIKPT 227 (311)
T ss_dssp CSHHHHHHHHHHHTTSCCCEEEEC-CCEEEEEC-EETTTT-----EESCS---------GGGGE-EE----EESGGGHHH
T ss_pred CCHHHHHHHHHHHHHcCCcEEEec-CCCCcCce-eccCCC-----Ccccc---------cCCCC-Cc----cccccccHH
Confidence 677777788899999999999875 22100000 000000 00000 00000 00 000001123
Q ss_pred CHHHHHHHHHhc--CCCEEEEe-ccCHHH----HHcCCcEEEEcC
Q 017781 213 SWKDVKWLQTIT--KLPILVKG-VLTAED----VQAGAAGIIVSN 250 (366)
Q Consensus 213 ~~~~i~~lr~~~--~~pv~vK~-v~~~~d----~~aGad~I~vs~ 250 (366)
.|+.++++++.+ ++||+.=| +.+.+| ..+|||+|.+..
T Consensus 228 ~~~~i~~v~~~~~~~ipvi~~GGI~~~~da~~~l~~GAd~V~vg~ 272 (311)
T 1jub_A 228 ALANVRAFYTRLKPEIQIIGTGGIETGQDAFEHLLCGATMLQIGT 272 (311)
T ss_dssp HHHHHHHHHTTSCTTSEEEEESSCCSHHHHHHHHHHTCSEEEECH
T ss_pred HHHHHHHHHHhcCCCCCEEEECCCCCHHHHHHHHHcCCCEEEEch
Confidence 578899999998 89988775 468887 778999998743
|
| >1gvf_A Tagatose-bisphosphate aldolase AGAY; lyase, zinc.; HET: PGH; 1.45A {Escherichia coli} SCOP: c.1.10.2 | Back alignment and structure |
|---|
Probab=90.67 E-value=4.1 Score=37.77 Aligned_cols=100 Identities=17% Similarity=0.284 Sum_probs=69.1
Q ss_pred HHcCCcEEEEcC---CCccCCCCCcchHHHHHHHHHHcCCCceEEEecCCCCH-HHHHHHHHhCcCEEEecHHHHHHhhh
Q 017781 239 VQAGAAGIIVSN---HGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRG-TDVFKALALGASGIFIGRPVVYSLAA 314 (366)
Q Consensus 239 ~~aGad~I~vs~---~gg~~~~~~~~~~~~l~~i~~~~~~~i~vi~~GGI~~~-~dv~kalalGAd~V~igr~~l~~l~~ 314 (366)
.+.|+|.+-++. ||-+. ....-.++.|.+|.+.+ ++|+..=||=..+ +++.|++.+|..-|-|++-+.++...
T Consensus 165 ~~TgvD~LAvaiGt~HG~Y~-~~p~Ld~~~L~~I~~~~--~vpLVlHGgSG~~~e~i~~ai~~Gv~KiNi~Tdl~~a~~~ 241 (286)
T 1gvf_A 165 ELTGVDSLAVAIGTAHGLYS-KTPKIDFQRLAEIREVV--DVPLVLHGASDVPDEFVRRTIELGVTKVNVATELKIAFAG 241 (286)
T ss_dssp HHHCCSEEEECSSCCSSCCS-SCCCCCHHHHHHHHHHC--CSCEEECCCTTCCHHHHHHHHHTTEEEEEECHHHHHHHHH
T ss_pred HHHCCCEEEeecCccccCcC-CCCccCHHHHHHHHHhc--CCCEEEECCCCCCHHHHHHHHHCCCeEEEEChHHHHHHHH
Confidence 578999999874 44322 11123678999999998 7999998865544 55888999999999999977554211
Q ss_pred -------cC-----HH-HHHHHHHHHHHHHHHHHHHcCCC
Q 017781 315 -------EG-----EK-GVRRVLEMLREEFELAMALSGCR 341 (366)
Q Consensus 315 -------~G-----~~-gv~~~~~~l~~el~~~m~~~G~~ 341 (366)
.. +. -+....+.+++.++..|..+|+.
T Consensus 242 ~~r~~~~~~~~~~dpr~~~~~~~~a~~~~v~~~~~~~gs~ 281 (286)
T 1gvf_A 242 AVKAWFAENPQGNDPRYYMRVGMDAMKEVVRNKINVCGSA 281 (286)
T ss_dssp HHHHHHHHCTTCCCHHHHHHHHHHHHHHHHHHHHHHHTCT
T ss_pred HHHHHHHhCcccCChHHHHHHHHHHHHHHHHHHHHHhCCC
Confidence 11 11 13334466778888888888864
|
| >3tha_A Tryptophan synthase alpha chain; structural genomics, center for structural genomics of infec diseases, csgid, lyase; 2.37A {Campylobacter jejuni} | Back alignment and structure |
|---|
Probab=90.66 E-value=0.47 Score=43.41 Aligned_cols=37 Identities=32% Similarity=0.478 Sum_probs=29.6
Q ss_pred HHHHHHHHHhcCCCEEEEe-ccCHHH---HHcCCcEEEEcC
Q 017781 214 WKDVKWLQTITKLPILVKG-VLTAED---VQAGAAGIIVSN 250 (366)
Q Consensus 214 ~~~i~~lr~~~~~pv~vK~-v~~~~d---~~aGad~I~vs~ 250 (366)
.+.++++|+.+++|+++.. +.++++ ...+||+++|..
T Consensus 188 ~~~v~~vr~~~~~Pv~vGfGIst~e~a~~~~~~ADGVIVGS 228 (252)
T 3tha_A 188 QDKVKEIRSFTNLPIFVGFGIQNNQDVKRMRKVADGVIVGT 228 (252)
T ss_dssp HHHHHHHHTTCCSCEEEESSCCSHHHHHHHTTTSSEEEECH
T ss_pred HHHHHHHHHhcCCcEEEEcCcCCHHHHHHHHhcCCEEEECH
Confidence 3568999999999999995 468877 555799999854
|
| >1vqt_A Orotidine 5'-phosphate decarboxylase; TM0332, structural GEN joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.00A {Thermotoga maritima} SCOP: c.1.2.3 | Back alignment and structure |
|---|
Probab=90.59 E-value=0.15 Score=45.52 Aligned_cols=44 Identities=18% Similarity=0.118 Sum_probs=29.9
Q ss_pred HHHHHHHHHcCCCceEEEecCCCCHH---H------HHHHHHhCcCEEEecHHHHHH
Q 017781 264 MALEEVVKATQGRIPVFLDGGVRRGT---D------VFKALALGASGIFIGRPVVYS 311 (366)
Q Consensus 264 ~~l~~i~~~~~~~i~vi~~GGI~~~~---d------v~kalalGAd~V~igr~~l~~ 311 (366)
+.+.++++.++ .+ ++++||+-.. | ..+ +..|||.+.+||+++.+
T Consensus 146 ~~~~~ir~~~~--~~-~v~pGI~~~~~~~dq~rv~t~~~-i~aGad~iVvGR~I~~a 198 (213)
T 1vqt_A 146 PWAKALREKIK--GK-ILVPGIRMEVKADDQKDVVTLEE-MKGIANFAVLGREIYLS 198 (213)
T ss_dssp HHHHHHTTTCC--SC-EEECCBC---------CCBCHHH-HTTTCSEEEESHHHHTS
T ss_pred HHHHHHHHHCC--CC-EEECCCCCCCCccchhhcCCHHH-HHCCCCEEEEChhhcCC
Confidence 34555655553 35 8889997543 2 677 88999999999998753
|
| >1r0m_A N-acylamino acid racemase; isomerase; 1.30A {Deinococcus radiodurans} SCOP: c.1.11.2 d.54.1.1 PDB: 1xpy_A* 1xs2_A 2ggj_A 2ggi_A 2ggh_A* 2ggg_A* 2fkp_A | Back alignment and structure |
|---|
Probab=90.57 E-value=2.6 Score=40.29 Aligned_cols=43 Identities=33% Similarity=0.458 Sum_probs=37.2
Q ss_pred chHHHHHHHHHHcCCCceEEEecCCCCHHHHHHHHHhC-cCEEEec
Q 017781 261 ATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALG-ASGIFIG 305 (366)
Q Consensus 261 ~~~~~l~~i~~~~~~~i~vi~~GGI~~~~dv~kalalG-Ad~V~ig 305 (366)
..++.+.++++.+ .+||+++.-+.+..|+.+.+..| +|.|++-
T Consensus 226 ~d~~~~~~l~~~~--~ipIa~dE~~~~~~~~~~~i~~~~~d~v~ik 269 (375)
T 1r0m_A 226 DDLVDHAELARRI--RTPLCLDESVASASDARKALALGAGGVINLK 269 (375)
T ss_dssp TCSHHHHHHHHHC--SSCEEESTTCCSHHHHHHHHHHTSCSEEEEC
T ss_pred ccHHHHHHHHHhC--CCCEEecCccCCHHHHHHHHHhCCCCEEEEC
Confidence 3566778888777 79999999999999999999988 8999984
|
| >2ehh_A DHDPS, dihydrodipicolinate synthase; structural genomics, NPPSFA, national project on protein structural and functional analyses; 1.90A {Aquifex aeolicus} | Back alignment and structure |
|---|
Probab=90.50 E-value=11 Score=34.85 Aligned_cols=174 Identities=17% Similarity=0.184 Sum_probs=95.0
Q ss_pred ceEecccccccccCChhhHHHHHHHHHcCCceec--CC---CCCCCHHHHhc-------c-CC-CceEEEeeecCCHHHH
Q 017781 73 PIMIAPTAMQKMAHPEGEYATARAASAAGTIMTL--SS---WSTSSVEEVAS-------T-GP-GIRFFQLYVYKDRNVV 138 (366)
Q Consensus 73 Pi~iApm~~~~l~~~~~e~~la~aa~~~G~~~~v--s~---~~~~~~e~i~~-------~-~~-~~~~~Qly~~~d~~~~ 138 (366)
|.++.|+. .+-...++-..+++-.-+.|+...+ +| ..+.+.+|-.+ . .. .|.+...- ..+.+..
T Consensus 7 ~a~vTPf~-dg~iD~~~l~~lv~~li~~Gv~gl~~~GttGE~~~Ls~~Er~~v~~~~~~~~~grvpviaGvg-~~~t~~a 84 (294)
T 2ehh_A 7 VALITPFK-EGEVDYEALGNLIEFHVDNGTDAILVCGTTGESPTLTFEEHEKVIEFAVKRAAGRIKVIAGTG-GNATHEA 84 (294)
T ss_dssp EECCCCEE-TTEECHHHHHHHHHHHHTTTCCEEEESSTTTTGGGSCHHHHHHHHHHHHHHHTTSSEEEEECC-CSCHHHH
T ss_pred eeeecCcC-CCCcCHHHHHHHHHHHHHCCCCEEEECccccChhhCCHHHHHHHHHHHHHHhCCCCcEEEecC-CCCHHHH
Confidence 44556665 4433334445677777778875543 33 34566665432 1 22 35555554 3456667
Q ss_pred HHHHHHHHHcCCCEEEEecCCCCCcchhHHHhhhcCCCCccccccccccccCCCccccchhhHHHhhhccCCCCCHHHHH
Q 017781 139 AQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLTLKNFQGLDLGKMDEANDSGLAAYVAGQIDRSLSWKDVK 218 (366)
Q Consensus 139 ~~~l~ra~~~G~~ai~vtvd~p~~g~r~~d~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~i~ 218 (366)
.++.++++++|++++.+. +|.. ++ | ...-..+..+
T Consensus 85 i~la~~A~~~Gadavlv~--~P~y-~~----------~--------------------------------s~~~l~~~f~ 119 (294)
T 2ehh_A 85 VHLTAHAKEVGADGALVV--VPYY-NK----------P--------------------------------TQRGLYEHFK 119 (294)
T ss_dssp HHHHHHHHHTTCSEEEEE--CCCS-SC----------C--------------------------------CHHHHHHHHH
T ss_pred HHHHHHHHhcCCCEEEEC--CCCC-CC----------C--------------------------------CHHHHHHHHH
Confidence 788899999999998874 2321 00 0 0000123345
Q ss_pred HHHHhcCCCEEEEec-------cCHHH----H-HcC-CcEEEEcCCCccCCCCCcchHHHHHHHHHHcCCCceEEEecCC
Q 017781 219 WLQTITKLPILVKGV-------LTAED----V-QAG-AAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGV 285 (366)
Q Consensus 219 ~lr~~~~~pv~vK~v-------~~~~d----~-~aG-ad~I~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~i~vi~~GGI 285 (366)
.+-+.+++||++=.+ ++++. . +.. +-+|.-+. ..+..+.++.+..++++.| .+|.
T Consensus 120 ~va~a~~lPiilYn~P~~tg~~l~~~~~~~La~~~pnivgiKds~----------gd~~~~~~~~~~~~~~f~v-~~G~- 187 (294)
T 2ehh_A 120 TVAQEVDIPIIIYNIPSRTCVEISVDTMFKLASECENIVASKEST----------PNMDRISEIVKRLGESFSV-LSGD- 187 (294)
T ss_dssp HHHHHCCSCEEEEECHHHHSCCCCHHHHHHHHHHCTTEEEEEECC----------SCHHHHHHHHHHHCTTSEE-EESS-
T ss_pred HHHHhcCCCEEEEeCCcccCcCCCHHHHHHHHhhCCCEEEEEeCC----------CCHHHHHHHHHhcCCCeEE-EECc-
Confidence 555666788887654 24443 2 221 22222211 1344455555555555655 4452
Q ss_pred CCHHHHHHHHHhCcCEEEecHH
Q 017781 286 RRGTDVFKALALGASGIFIGRP 307 (366)
Q Consensus 286 ~~~~dv~kalalGAd~V~igr~ 307 (366)
-.-++.++++||+++.-+..
T Consensus 188 --d~~~~~~l~~G~~G~is~~a 207 (294)
T 2ehh_A 188 --DSLTLPMMALGAKGVISVAN 207 (294)
T ss_dssp --GGGHHHHHHTTCCEEEESGG
T ss_pred --HHHHHHHHHCCCCEEEeCHH
Confidence 33477899999999998874
|
| >3tak_A DHDPS, dihydrodipicolinate synthase; TIM barrel, lysine biosynthesis, pyruvate, lyase; 1.42A {Acinetobacter baumannii} PDB: 3pud_A* 3pue_A* 3pul_A 3rk8_A 3tce_A* 3tdf_A 3u8g_A 3uqn_A 4dxv_A | Back alignment and structure |
|---|
Probab=90.50 E-value=11 Score=34.81 Aligned_cols=175 Identities=18% Similarity=0.217 Sum_probs=95.1
Q ss_pred ceEecccccccccCChhhHHHHHHHHHcCCceec--C---CCCCCCHHHHhc-------c-CC-CceEEEeeecCCHHHH
Q 017781 73 PIMIAPTAMQKMAHPEGEYATARAASAAGTIMTL--S---SWSTSSVEEVAS-------T-GP-GIRFFQLYVYKDRNVV 138 (366)
Q Consensus 73 Pi~iApm~~~~l~~~~~e~~la~aa~~~G~~~~v--s---~~~~~~~e~i~~-------~-~~-~~~~~Qly~~~d~~~~ 138 (366)
|-++.|+.-.+-...++-..+++-.-+.|+...+ + +..+.+.+|-.+ . .+ .+.+...- ..+.+..
T Consensus 7 ~a~vTPf~~dg~iD~~~l~~lv~~li~~Gv~gl~~~GttGE~~~Ls~~Er~~v~~~~~~~~~gr~pviaGvg-~~~t~~a 85 (291)
T 3tak_A 7 VAIVTPMLKDGGVDWKSLEKLVEWHIEQGTNSIVAVGTTGEASTLSMEEHTQVIKEIIRVANKRIPIIAGTG-ANSTREA 85 (291)
T ss_dssp EECCCCBCTTSCBCHHHHHHHHHHHHHHTCCEEEESSTTTTGGGSCHHHHHHHHHHHHHHHTTSSCEEEECC-CSSHHHH
T ss_pred eeeECCCCCCCCcCHHHHHHHHHHHHHCCCCEEEECccccccccCCHHHHHHHHHHHHHHhCCCCeEEEeCC-CCCHHHH
Confidence 4455666422222233334666666778876443 3 334556665432 1 22 35666654 3466667
Q ss_pred HHHHHHHHHcCCCEEEEecCCCCCcchhHHHhhhcCCCCccccccccccccCCCccccchhhHHHhhhccCCCCCHHHHH
Q 017781 139 AQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLTLKNFQGLDLGKMDEANDSGLAAYVAGQIDRSLSWKDVK 218 (366)
Q Consensus 139 ~~~l~ra~~~G~~ai~vtvd~p~~g~r~~d~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~i~ 218 (366)
.++.++++++|++++.+. +|... + | ..+-..+..+
T Consensus 86 i~la~~a~~~Gadavlv~--~P~y~-~----------~--------------------------------~~~~l~~~f~ 120 (291)
T 3tak_A 86 IELTKAAKDLGADAALLV--TPYYN-K----------P--------------------------------TQEGLYQHYK 120 (291)
T ss_dssp HHHHHHHHHHTCSEEEEE--CCCSS-C----------C--------------------------------CHHHHHHHHH
T ss_pred HHHHHHHHhcCCCEEEEc--CCCCC-C----------C--------------------------------CHHHHHHHHH
Confidence 788899999999998873 23210 0 0 0000123455
Q ss_pred HHHHhcCCCEEEEec-------cCHHH-HHc-C---CcEEEEcCCCccCCCCCcchHHHHHHHHHHcCCCceEEEecCCC
Q 017781 219 WLQTITKLPILVKGV-------LTAED-VQA-G---AAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVR 286 (366)
Q Consensus 219 ~lr~~~~~pv~vK~v-------~~~~d-~~a-G---ad~I~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~i~vi~~GGI~ 286 (366)
.+-+.+++||++=.+ .+++. .+. - +-+|.-+. ..+..+.++.+..++++.|+ +|.
T Consensus 121 ~ia~a~~lPiilYn~P~~tg~~l~~~~~~~La~~pnivgiK~ss----------gd~~~~~~~~~~~~~~f~v~-~G~-- 187 (291)
T 3tak_A 121 AIAEAVELPLILYNVPGRTGVDLSNDTAVRLAEIPNIVGIKDAT----------GDVPRGKALIDALNGKMAVY-SGD-- 187 (291)
T ss_dssp HHHHHCCSCEEEEECHHHHSCCCCHHHHHHHTTSTTEEEEEECS----------CCHHHHHHHHHHHTTSSEEE-ECC--
T ss_pred HHHHhcCCCEEEEecccccCCCCCHHHHHHHHcCCCEEEEEeCC----------CCHHHHHHHHHHcCCCeEEE-ECc--
Confidence 666667888887754 23333 111 1 11222111 23444555655555566654 453
Q ss_pred CHHHHHHHHHhCcCEEEecHH
Q 017781 287 RGTDVFKALALGASGIFIGRP 307 (366)
Q Consensus 287 ~~~dv~kalalGAd~V~igr~ 307 (366)
..-++.++++||+++.-+..
T Consensus 188 -d~~~~~~l~~G~~G~is~~~ 207 (291)
T 3tak_A 188 -DETAWELMLLGADGNISVTA 207 (291)
T ss_dssp -HHHHHHHHHTTCCEEEESGG
T ss_pred -HHHHHHHHHCCCCEEEechh
Confidence 45577889999999987764
|
| >1eep_A Inosine 5'-monophosphate dehydrogenase; alpha-beta barrel, TIM barrel, IMPDH, IMP dehydrogenase, LOO purine biosynthesis, oxidoreductase; 2.40A {Borrelia burgdorferi} SCOP: c.1.5.1 | Back alignment and structure |
|---|
Probab=90.44 E-value=0.47 Score=46.18 Aligned_cols=61 Identities=11% Similarity=0.262 Sum_probs=46.1
Q ss_pred HHcCCcEEEEcCCCccCCCCCcchHHHHHHHHHHcCCCceEEEecCCCCHHHHHHHHHhCcCEEEec
Q 017781 239 VQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFIG 305 (366)
Q Consensus 239 ~~aGad~I~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~i~vi~~GGI~~~~dv~kalalGAd~V~ig 305 (366)
.++|+|+|.+....|. ....++.+.++++.++ ++||++ |++.+.+++.++..+|||++.+|
T Consensus 162 ~~~G~d~i~i~~~~g~----~~~~~e~i~~ir~~~~-~~pviv-~~v~~~~~a~~a~~~Gad~I~vg 222 (404)
T 1eep_A 162 VKAHVDILVIDSAHGH----STRIIELIKKIKTKYP-NLDLIA-GNIVTKEAALDLISVGADCLKVG 222 (404)
T ss_dssp HHTTCSEEEECCSCCS----SHHHHHHHHHHHHHCT-TCEEEE-EEECSHHHHHHHHTTTCSEEEEC
T ss_pred HHCCCCEEEEeCCCCC----hHHHHHHHHHHHHHCC-CCeEEE-cCCCcHHHHHHHHhcCCCEEEEC
Confidence 7799999988321121 1235677788887764 689887 77889999999999999999993
|
| >3i6e_A Muconate cycloisomerase I; structural genomics, NYSGXRC, targer 9468A, muconate lactonizing enzyme, PSI-2, protein structure initiative; 1.70A {Ruegeria pomeroyi} PDB: 3i6t_A | Back alignment and structure |
|---|
Probab=90.33 E-value=1.6 Score=42.19 Aligned_cols=84 Identities=17% Similarity=0.140 Sum_probs=56.3
Q ss_pred HHHHHHHHHhc-CCCEEEEec--cCHHH--------HHcCCcEEEEcCCCccCCCCCcchHHHHHHHHHHcCCCceEEEe
Q 017781 214 WKDVKWLQTIT-KLPILVKGV--LTAED--------VQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLD 282 (366)
Q Consensus 214 ~~~i~~lr~~~-~~pv~vK~v--~~~~d--------~~aGad~I~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~i~vi~~ 282 (366)
.+.++.+|+.+ +.++.+..- .+.++ .+.|+++|- + ...+..++.+.++++.. .+||.++
T Consensus 180 ~~~v~avR~a~~~~~l~vDan~~~~~~~A~~~~~~L~~~~i~~iE-------q-P~~~~d~~~~~~l~~~~--~iPIa~d 249 (385)
T 3i6e_A 180 IMRLELIARDFPEFRVRVDYNQGLEIDEAVPRVLDVAQFQPDFIE-------Q-PVRAHHFELMARLRGLT--DVPLLAD 249 (385)
T ss_dssp HHHHHHHHHHCTTSEEEEECTTCCCGGGHHHHHHHHHTTCCSCEE-------C-CSCTTCHHHHHHHHTTC--SSCEEES
T ss_pred HHHHHHHHHhCCCCeEEEECCCCCCHHHHHHHHHHHHhcCCCEEE-------C-CCCcccHHHHHHHHHhC--CCCEEEe
Confidence 34566666665 455666532 22222 445666663 1 11223567788887766 7999999
Q ss_pred cCCCCHHHHHHHHHhC-cCEEEecHH
Q 017781 283 GGVRRGTDVFKALALG-ASGIFIGRP 307 (366)
Q Consensus 283 GGI~~~~dv~kalalG-Ad~V~igr~ 307 (366)
.-+.+..|+.+++..| +|.|++--.
T Consensus 250 E~~~~~~~~~~~~~~~~~d~v~~k~~ 275 (385)
T 3i6e_A 250 ESVYGPEDMVRAAHEGICDGVSIKIM 275 (385)
T ss_dssp TTCCSHHHHHHHHHHTCCSEEEECHH
T ss_pred CCcCCHHHHHHHHHcCCCCEEEeccc
Confidence 9999999999999987 799988643
|
| >1nsj_A PRAI, phosphoribosyl anthranilate isomerase; thermostability; 2.00A {Thermotoga maritima} SCOP: c.1.2.4 PDB: 1lbm_A 1dl3_A | Back alignment and structure |
|---|
Probab=90.31 E-value=1.9 Score=38.06 Aligned_cols=84 Identities=14% Similarity=0.223 Sum_probs=53.2
Q ss_pred CHHHHHHHHHhcCCCEEEEec--cCHHH----HHcCCcEEEEcCC----Ccc--CCCCCcchHHHHHHHHHHcCCCceEE
Q 017781 213 SWKDVKWLQTITKLPILVKGV--LTAED----VQAGAAGIIVSNH----GAR--QLDYVPATIMALEEVVKATQGRIPVF 280 (366)
Q Consensus 213 ~~~~i~~lr~~~~~pv~vK~v--~~~~d----~~aGad~I~vs~~----gg~--~~~~~~~~~~~l~~i~~~~~~~i~vi 280 (366)
+.+.++.+|+ ++|++ |-+ .+.++ .+..+|++.++.. ||+ ..||. .+.++. ....|++
T Consensus 87 ~~~~~~~l~~--~~~vi-ka~~v~~~~~l~~~~~~~~d~~LlD~~~~~~GGtG~~fdw~-----~l~~~~---~~~~p~~ 155 (205)
T 1nsj_A 87 PIELCRKIAE--RILVI-KAVGVSNERDMERALNYREFPILLDTKTPEYGGSGKTFDWS-----LILPYR---DRFRYLV 155 (205)
T ss_dssp CHHHHHHHHT--TSEEE-EEEEESSHHHHHHHGGGTTSCEEEEESCSSSSSCCSCCCGG-----GTGGGG---GGSSCEE
T ss_pred CHHHHHHHhc--CCCEE-EEEEcCCHHHHHHHHHcCCCEEEECCCCCCCCCCCCccCHH-----HHHhhh---cCCCcEE
Confidence 4456666654 35654 533 33333 2334899998764 442 34443 333321 1257999
Q ss_pred EecCCCCHHHHHHHHH-hCcCEEEecHHH
Q 017781 281 LDGGVRRGTDVFKALA-LGASGIFIGRPV 308 (366)
Q Consensus 281 ~~GGI~~~~dv~kala-lGAd~V~igr~~ 308 (366)
..||+ +++.+.+|+. +++.+|=+.+-+
T Consensus 156 LAGGL-~peNV~~ai~~~~p~gVDvsSGv 183 (205)
T 1nsj_A 156 LSGGL-NPENVRSAIDVVRPFAVDVSSGV 183 (205)
T ss_dssp EESSC-CTTTHHHHHHHHCCSEEEESGGG
T ss_pred EECCC-CHHHHHHHHHhcCCCEEEECCce
Confidence 99999 7889999987 699999998654
|
| >3eoo_A Methylisocitrate lyase; seattle structural genomics center for infectious disease, ssgcid; 2.90A {Burkholderia pseudomallei 1655} SCOP: c.1.12.7 | Back alignment and structure |
|---|
Probab=90.25 E-value=6.2 Score=36.80 Aligned_cols=62 Identities=15% Similarity=0.077 Sum_probs=43.7
Q ss_pred HHcCCcEEEEcCCCccCCCCCcchHHHHHHHHHHcCCCceEEEe---cCCCCHHHHHHHHHhCcCEEEecHHHHHH
Q 017781 239 VQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLD---GGVRRGTDVFKALALGASGIFIGRPVVYS 311 (366)
Q Consensus 239 ~~aGad~I~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~i~vi~~---GGI~~~~dv~kalalGAd~V~igr~~l~~ 311 (366)
.++|||.|.+-+ +.+.+.+.++.+.+ ++||+++ +|-.-.-.+.+.-++|.+.|.+|...+.+
T Consensus 181 ~~AGAD~if~~~---------~~~~ee~~~~~~~~--~~Pl~~n~~~~g~tp~~~~~eL~~lGv~~v~~~~~~~ra 245 (298)
T 3eoo_A 181 VEAGADMIFPEA---------MKTLDDYRRFKEAV--KVPILANLTEFGSTPLFTLDELKGANVDIALYCCGAYRA 245 (298)
T ss_dssp HHTTCSEEEECC---------CCSHHHHHHHHHHH--CSCBEEECCTTSSSCCCCHHHHHHTTCCEEEECSHHHHH
T ss_pred HhcCCCEEEeCC---------CCCHHHHHHHHHHc--CCCeEEEeccCCCCCCCCHHHHHHcCCeEEEEchHHHHH
Confidence 999999998733 34677888888888 5887664 43221123444556899999999877665
|
| >2hjp_A Phosphonopyruvate hydrolase; phosporus-Ca cleavage, PEP mutase/isocitrate lyase superfamily; HET: XYS PPR; 1.90A {Variovorax SP} PDB: 2dua_A* 2hrw_A | Back alignment and structure |
|---|
Probab=90.20 E-value=7.1 Score=36.22 Aligned_cols=65 Identities=20% Similarity=0.231 Sum_probs=44.4
Q ss_pred HHcCCcEEEEcCCCccCCCCCcchHHHHHHHHHHcCCCceEEEecCCCCHHHHHHHHHhC-cCEEEecHHHHHH
Q 017781 239 VQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALG-ASGIFIGRPVVYS 311 (366)
Q Consensus 239 ~~aGad~I~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~i~vi~~GGI~~~~dv~kalalG-Ad~V~igr~~l~~ 311 (366)
.++|||.|.+-+ ++++.+.+.++.+.++..+|+++.-.-...-++.+.-++| .+.|.+|...+.+
T Consensus 176 ~eAGAd~i~~e~--------~~~~~~~~~~i~~~~~~~vP~i~n~~~~~~~~~~eL~~lG~v~~v~~~~~~~ra 241 (290)
T 2hjp_A 176 EEAGADAILIHS--------RQKTPDEILAFVKSWPGKVPLVLVPTAYPQLTEADIAALSKVGIVIYGNHAIRA 241 (290)
T ss_dssp HHTTCSEEEECC--------CCSSSHHHHHHHHHCCCSSCEEECGGGCTTSCHHHHHTCTTEEEEEECSHHHHH
T ss_pred HHcCCcEEEeCC--------CCCCHHHHHHHHHHcCCCCCEEEeccCCCCCCHHHHHhcCCeeEEEechHHHHH
Confidence 899999998733 2455677788888885459999752100112344444589 9999999877665
|
| >3zwt_A Dihydroorotate dehydrogenase (quinone), mitochond; oxidoreductase; HET: FMN ORO KFZ; 1.55A {Homo sapiens} PDB: 1d3h_A* 2bxv_A* 2prh_A* 2prl_A* 2prm_A* 3f1q_A* 3fj6_A* 3fjl_A* 3g0u_A* 3g0x_A* 3zws_A* 1d3g_A* 3u2o_A* 2fpv_A* 2fpt_A* 2fpy_A* 2fqi_A* 3kvl_A* 3kvk_A* 3kvj_A* ... | Back alignment and structure |
|---|
Probab=90.03 E-value=0.89 Score=43.82 Aligned_cols=101 Identities=21% Similarity=0.289 Sum_probs=63.9
Q ss_pred CceEEEeeecCCHHHHHHHHHHHHHcCCCEEEEecCCCCCcchhHHHhhhcCCCCccccccccccccCCCccccchhhHH
Q 017781 123 GIRFFQLYVYKDRNVVAQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLTLKNFQGLDLGKMDEANDSGLAA 202 (366)
Q Consensus 123 ~~~~~Qly~~~d~~~~~~~l~ra~~~G~~ai~vtvd~p~~g~r~~d~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~ 202 (366)
.|.++.+-+..+.+.+.++++.++++|+++|.++--+.. |.. ...|. ..+ ... +
T Consensus 221 ~Pv~vKi~p~~~~~~~~~ia~~~~~aGadgi~v~ntt~~---r~~-----~~~~~---~~~----------~~g--G--- 274 (367)
T 3zwt_A 221 PAVLVKIAPDLTSQDKEDIASVVKELGIDGLIVTNTTVS---RPA-----GLQGA---LRS----------ETG--G--- 274 (367)
T ss_dssp CEEEEEECSCCCHHHHHHHHHHHHHHTCCEEEECCCBSC---CCT-----TCCCT---TTT----------SSS--E---
T ss_pred ceEEEEeCCCCCHHHHHHHHHHHHHcCCCEEEEeCCCcc---ccc-----ccccc---ccc----------ccC--C---
Confidence 578888877777778888999999999999987622110 100 00000 000 000 0
Q ss_pred HhhhccCCCCCHHHHHHHHHhc--CCCEEEEe-ccCHHH----HHcCCcEEEEcC
Q 017781 203 YVAGQIDRSLSWKDVKWLQTIT--KLPILVKG-VLTAED----VQAGAAGIIVSN 250 (366)
Q Consensus 203 ~~~~~~d~~~~~~~i~~lr~~~--~~pv~vK~-v~~~~d----~~aGad~I~vs~ 250 (366)
++.....+.+|+.|+++++.+ ++||+.=| +.+.+| .++|||+|.+..
T Consensus 275 -lSG~~i~p~a~~~v~~i~~~v~~~ipvI~~GGI~s~~da~~~l~~GAd~V~vgr 328 (367)
T 3zwt_A 275 -LSGKPLRDLSTQTIREMYALTQGRVPIIGVGGVSSGQDALEKIRAGASLVQLYT 328 (367)
T ss_dssp -EEEGGGHHHHHHHHHHHHHHTTTCSCEEEESSCCSHHHHHHHHHHTCSEEEESH
T ss_pred -cCCcccchhHHHHHHHHHHHcCCCceEEEECCCCCHHHHHHHHHcCCCEEEECH
Confidence 000011234678899999999 79988764 578888 779999998743
|
| >2zc8_A N-acylamino acid racemase; octamer, TIM beta/alpha-barrel, metal-binding, metal binding; 1.95A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=89.95 E-value=3.2 Score=39.53 Aligned_cols=42 Identities=17% Similarity=0.303 Sum_probs=36.9
Q ss_pred hHHHHHHHHHHcCCCceEEEecCCCCHHHHHHHHHhC-cCEEEec
Q 017781 262 TIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALG-ASGIFIG 305 (366)
Q Consensus 262 ~~~~l~~i~~~~~~~i~vi~~GGI~~~~dv~kalalG-Ad~V~ig 305 (366)
.++.+.++++.+ .+||+++.-+.+..|+.+++..| +|.|++-
T Consensus 220 d~~~~~~l~~~~--~ipIa~dE~~~~~~~~~~~i~~~~~d~v~ik 262 (369)
T 2zc8_A 220 DLLDHAKLQREL--STPICLDESLTGAEKARKAIELGAGRVFNVK 262 (369)
T ss_dssp CSHHHHHHHHHC--SSCEEESTTCCSHHHHHHHHHHTCCSEEEEC
T ss_pred cHHHHHHHHhhC--CCCEEEcCccCCHHHHHHHHHhCCCCEEEEc
Confidence 566777888777 79999999999999999999988 8999985
|
| >4aaj_A N-(5'-phosphoribosyl)anthranilate isomerase; alpha/beta-barrel, hyperthermophilic, phosphoribo isomerase; 1.75A {Pyrococcus furiosus} | Back alignment and structure |
|---|
Probab=89.94 E-value=1.2 Score=39.96 Aligned_cols=90 Identities=17% Similarity=0.267 Sum_probs=60.5
Q ss_pred cCCCCCHHHHHHHHHhcCCCEEEEec--c----CHH-H--------HHcCCcEEEEcCCCcc--CCCCCcchHHHHHHHH
Q 017781 208 IDRSLSWKDVKWLQTITKLPILVKGV--L----TAE-D--------VQAGAAGIIVSNHGAR--QLDYVPATIMALEEVV 270 (366)
Q Consensus 208 ~d~~~~~~~i~~lr~~~~~pv~vK~v--~----~~~-d--------~~aGad~I~vs~~gg~--~~~~~~~~~~~l~~i~ 270 (366)
.+.+.+.+.++.+++.+++|++ |-+ . ..+ + ....+|++.+...||+ ..| |+.+..+.
T Consensus 98 LHG~E~~~~~~~l~~~~~~~vi-Ka~~v~~~~~~~~~~~~~~~~~~~~~~~d~~LlDs~GGtG~~fD-----W~~~~~~~ 171 (228)
T 4aaj_A 98 VHSNALPQTIDTLKKEFGVFVM-KAFRVPTISKNPEEDANRLLSEISRYNADMVLLDTGAGSGKLHD-----LRVSSLVA 171 (228)
T ss_dssp ECSCCCHHHHHHHHHHHCCEEE-EEEECCSSCSCHHHHHHHHHHHHHHSCCSEEEEEC-------CC-----CHHHHHHH
T ss_pred cccccCHHHHHHHhhccCceEE-EEEEecccccchhhhHHHHHHHHhccCCCEEccCCCCCCcCcCC-----hHHHHHhh
Confidence 3456677889999998888754 532 1 111 1 4457999999877664 234 44555544
Q ss_pred HHcCCCceEEEecCCCCHHHHHHHHH-hCcCEEEecHHH
Q 017781 271 KATQGRIPVFLDGGVRRGTDVFKALA-LGASGIFIGRPV 308 (366)
Q Consensus 271 ~~~~~~i~vi~~GGI~~~~dv~kala-lGAd~V~igr~~ 308 (366)
. +.|+|..||+ +++.|.+|+. .+..+|=+.+-+
T Consensus 172 ~----~~p~iLAGGL-~peNV~~Ai~~~~P~gVDVsSGV 205 (228)
T 4aaj_A 172 R----KIPVIVAGGL-NAENVEEVIKVVKPYGVDVSSGV 205 (228)
T ss_dssp H----HSCEEEESSC-CTTTHHHHHHHHCCSEEEESGGG
T ss_pred h----cCCeEEECCC-CHHHHHHHHHHhCCCEEEeCCCC
Confidence 3 4699999999 6899999998 799888887643
|
| >2r91_A 2-keto-3-deoxy-(6-phospho-)gluconate aldolase; TIM barrel, thermophilic, lyase; 2.00A {Thermoproteus tenax} PDB: 2r94_A | Back alignment and structure |
|---|
Probab=89.91 E-value=0.98 Score=41.83 Aligned_cols=85 Identities=12% Similarity=0.151 Sum_probs=50.6
Q ss_pred HHcCCcEEEEcCCCccCCCCCcc-hHHHHHHHHHHcCCCceEEEecCCCCHHHHHH----HHHhCcCEEEecHHHHHH-h
Q 017781 239 VQAGAAGIIVSNHGARQLDYVPA-TIMALEEVVKATQGRIPVFLDGGVRRGTDVFK----ALALGASGIFIGRPVVYS-L 312 (366)
Q Consensus 239 ~~aGad~I~vs~~gg~~~~~~~~-~~~~l~~i~~~~~~~i~vi~~GGI~~~~dv~k----alalGAd~V~igr~~l~~-l 312 (366)
.+.|+|+|++.++.|....-... ..+++..+++.+.+ -|...|+. +-.++++ |-.+|||++++-.|+++. .
T Consensus 29 i~~Gv~gl~v~GttGE~~~Ls~~Er~~v~~~~~~~~~g--vi~Gvg~~-~t~~ai~la~~A~~~Gadavlv~~P~y~~~~ 105 (286)
T 2r91_A 29 TSKGVDVVFVAGTTGLGPALSLQEKMELTDAATSAARR--VIVQVASL-NADEAIALAKYAESRGAEAVASLPPYYFPRL 105 (286)
T ss_dssp HHTTCCEEEETSTTTTGGGSCHHHHHHHHHHHHHHCSS--EEEECCCS-SHHHHHHHHHHHHHTTCSEEEECCSCSSTTC
T ss_pred HHCCCCEEEECccccChhhCCHHHHHHHHHHHHHHhCC--EEEeeCCC-CHHHHHHHHHHHHhcCCCEEEEcCCcCCCCC
Confidence 56799999998876643211211 23455556666654 33444444 4444432 334799999999998764 2
Q ss_pred hhcCHHHHHHHHHHHHH
Q 017781 313 AAEGEKGVRRVLEMLRE 329 (366)
Q Consensus 313 ~~~G~~gv~~~~~~l~~ 329 (366)
.++++.++++.+.+
T Consensus 106 ---s~~~l~~~f~~va~ 119 (286)
T 2r91_A 106 ---SERQIAKYFRDLCS 119 (286)
T ss_dssp ---CHHHHHHHHHHHHH
T ss_pred ---CHHHHHHHHHHHHH
Confidence 45666555555443
|
| >1h1y_A D-ribulose-5-phosphate 3-epimerase; oxidative pentose phosphate pathway, isomerase; 1.87A {Oryza sativa} SCOP: c.1.2.2 PDB: 1h1z_A | Back alignment and structure |
|---|
Probab=89.71 E-value=3.2 Score=36.77 Aligned_cols=122 Identities=13% Similarity=0.076 Sum_probs=76.9
Q ss_pred cCCHHHHHHHHHHHHHcCCCEEEEec-CCCCCcchhHHHhhhcCCCCccccccccccccCCCccccchhhHHHhhhccCC
Q 017781 132 YKDRNVVAQLVRRAERAGFKAIALTV-DTPRLGRREADIKNRFTLPPFLTLKNFQGLDLGKMDEANDSGLAAYVAGQIDR 210 (366)
Q Consensus 132 ~~d~~~~~~~l~ra~~~G~~ai~vtv-d~p~~g~r~~d~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~ 210 (366)
..|.....+.++++.+.|++.+-+.+ |.+ | +| .-
T Consensus 15 a~d~~~l~~~i~~~~~~Gad~i~l~i~Dg~------------f-v~--------------------------------~~ 49 (228)
T 1h1y_A 15 SSDFANLAAEADRMVRLGADWLHMDIMDGH------------F-VP--------------------------------NL 49 (228)
T ss_dssp GSCGGGHHHHHHHHHHTTCSEEEEEEEBSS------------S-SS--------------------------------CB
T ss_pred eCCHHHHHHHHHHHHHcCCCEEEEEEecCC------------c-Cc--------------------------------ch
Confidence 45677778888999999999875532 111 0 01 01
Q ss_pred CCCHHHHHHHHHhcCCCEEEEec-cCHH----H-HHcCCcEEEEcCCCccCCCCCcch-HHHHHHHHHHcCCCceEEEec
Q 017781 211 SLSWKDVKWLQTITKLPILVKGV-LTAE----D-VQAGAAGIIVSNHGARQLDYVPAT-IMALEEVVKATQGRIPVFLDG 283 (366)
Q Consensus 211 ~~~~~~i~~lr~~~~~pv~vK~v-~~~~----d-~~aGad~I~vs~~gg~~~~~~~~~-~~~l~~i~~~~~~~i~vi~~G 283 (366)
.+..+.++.+|+.++.|+.+-.. .+++ . .++|+|+|+++..- .... ...+..+++. .+.++.+=
T Consensus 50 ~~~~~~~~~lr~~~~~~~~v~lmv~d~~~~i~~~~~agad~v~vH~~~------~~~~~~~~~~~i~~~---g~~igv~~ 120 (228)
T 1h1y_A 50 TIGAPVIQSLRKHTKAYLDCHLMVTNPSDYVEPLAKAGASGFTFHIEV------SRDNWQELIQSIKAK---GMRPGVSL 120 (228)
T ss_dssp CBCHHHHHHHHTTCCSEEEEEEESSCGGGGHHHHHHHTCSEEEEEGGG------CTTTHHHHHHHHHHT---TCEEEEEE
T ss_pred hhCHHHHHHHHhhcCCcEEEEEEecCHHHHHHHHHHcCCCEEEECCCC------cccHHHHHHHHHHHc---CCCEEEEE
Confidence 23457889999988767775543 3432 2 88999999985421 1123 3445444432 45566555
Q ss_pred CCCCHHHHHHHHHh---CcCEEEecHH
Q 017781 284 GVRRGTDVFKALAL---GASGIFIGRP 307 (366)
Q Consensus 284 GI~~~~dv~kalal---GAd~V~igr~ 307 (366)
.-.+..+.++.+.. ++|.|.+++-
T Consensus 121 ~p~t~~e~~~~~~~~~~~~d~vl~~sv 147 (228)
T 1h1y_A 121 RPGTPVEEVFPLVEAENPVELVLVMTV 147 (228)
T ss_dssp CTTSCGGGGHHHHHSSSCCSEEEEESS
T ss_pred eCCCCHHHHHHHHhcCCCCCEEEEEee
Confidence 56677777777776 9999999753
|
| >3pm6_A Putative fructose-bisphosphate aldolase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; 2.20A {Coccidioides immitis} | Back alignment and structure |
|---|
Probab=89.68 E-value=4.9 Score=37.60 Aligned_cols=105 Identities=16% Similarity=0.122 Sum_probs=71.6
Q ss_pred HHcCCcEEEEcC---CCccCCCCCcchHHHHHHHHHHcCCCceEEEecCCCCH-HHHHHHHHhCcCEEEecHHHHHHhhh
Q 017781 239 VQAGAAGIIVSN---HGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRG-TDVFKALALGASGIFIGRPVVYSLAA 314 (366)
Q Consensus 239 ~~aGad~I~vs~---~gg~~~~~~~~~~~~l~~i~~~~~~~i~vi~~GGI~~~-~dv~kalalGAd~V~igr~~l~~l~~ 314 (366)
.+.|+|.+-++. ||-+......-.++.|.+|.+.++.++|+..=||=..+ +++.+++.+|..-|-|++-+..+...
T Consensus 181 v~TgvD~LAvaiGt~HG~Yk~~~p~Ld~~~L~~I~~~v~~~vpLVlHGgSG~p~e~i~~ai~~GV~KiNi~Tdl~~a~~~ 260 (306)
T 3pm6_A 181 VATGINWLAPAFGNVHGNYGPRGVQLDYERLQRINEAVGERVGLVLHGADPFTKEIFEKCIERGVAKVNVNRAVNNEYVK 260 (306)
T ss_dssp HTTTCSEECCCSSCCSSCCCTTCCCCCHHHHHHHHHHHTTTSEEEECSCTTCCHHHHHHHHHTTEEEEEESHHHHHHHHH
T ss_pred HHcCCCEEEEEcCccccCcCCCCCccCHHHHHHHHHHhCCCCCEEeeCCCCCCHHHHHHHHHcCCeEEEeChHHHHHHHH
Confidence 667999888763 44332112233678999999988557999999876555 45789999999999999976543210
Q ss_pred --------cCH-HHHHHHHHHHHHHHHHHHHHcCCCCh
Q 017781 315 --------EGE-KGVRRVLEMLREEFELAMALSGCRSL 343 (366)
Q Consensus 315 --------~G~-~gv~~~~~~l~~el~~~m~~~G~~~l 343 (366)
..+ .-+....+.+++.++..|..+|+..-
T Consensus 261 ~~r~~~~~~~~~~~~~~~~~a~~~~v~~~i~~fgs~gk 298 (306)
T 3pm6_A 261 VMREKAGSLPITRLHEEVTNAMQAAVEKIMDMIDSTGK 298 (306)
T ss_dssp HHHHHTTTSCHHHHHHHHHHHHHHHHHHHHHHTTCTTG
T ss_pred HHHHHhccCCHHHHHHHHHHHHHHHHHHHHHHhCCCCc
Confidence 011 11233446677888889999997643
|
| >1ujp_A Tryptophan synthase alpha chain; riken structural genomics/P initiative, RSGI, structural genomics, lyase; HET: CIT; 1.34A {Thermus thermophilus} SCOP: c.1.2.4 PDB: 1wxj_A* | Back alignment and structure |
|---|
Probab=89.55 E-value=0.52 Score=43.49 Aligned_cols=37 Identities=24% Similarity=0.215 Sum_probs=30.9
Q ss_pred CHHHHHHHHHhcCCCEEEEec-cCHHH---HHcCCcEEEEcC
Q 017781 213 SWKDVKWLQTITKLPILVKGV-LTAED---VQAGAAGIIVSN 250 (366)
Q Consensus 213 ~~~~i~~lr~~~~~pv~vK~v-~~~~d---~~aGad~I~vs~ 250 (366)
..+.++++|+.+++||++-+. .++++ . .|||+++|..
T Consensus 190 ~~~~v~~vr~~~~~Pv~vGfGI~t~e~a~~~-~~ADgVIVGS 230 (271)
T 1ujp_A 190 VKDLVRRIKARTALPVAVGFGVSGKATAAQA-AVADGVVVGS 230 (271)
T ss_dssp CHHHHHHHHTTCCSCEEEESCCCSHHHHHHH-TTSSEEEECH
T ss_pred HHHHHHHHHhhcCCCEEEEcCCCCHHHHHHh-cCCCEEEECh
Confidence 457799999999999999965 45887 7 9999999854
|
| >3vav_A 3-methyl-2-oxobutanoate hydroxymethyltransferase; structural genomics, seattle structural genomics center for infectious disease; 1.80A {Burkholderia thailandensis} SCOP: c.1.12.8 PDB: 3ez4_A | Back alignment and structure |
|---|
Probab=89.54 E-value=3.3 Score=38.24 Aligned_cols=93 Identities=16% Similarity=0.113 Sum_probs=59.8
Q ss_pred CCCHHHHHHHHHhcCCCEEEEeccCHHH----HHcCCcEEEEcCCCcc----CCCCCcchHH-HHH---HHHHHcCCCce
Q 017781 211 SLSWKDVKWLQTITKLPILVKGVLTAED----VQAGAAGIIVSNHGAR----QLDYVPATIM-ALE---EVVKATQGRIP 278 (366)
Q Consensus 211 ~~~~~~i~~lr~~~~~pv~vK~v~~~~d----~~aGad~I~vs~~gg~----~~~~~~~~~~-~l~---~i~~~~~~~i~ 278 (366)
..+...++.+++. +.|+++=++-+... .++|+|.|.+....+. ..|..+-+++ .+. .+++.. .+.|
T Consensus 15 ~~t~~~lr~~~~~-g~~i~m~tayDa~sA~l~e~aG~d~ilvGdSl~~~~lG~~dt~~vtldem~~h~~aV~r~~-~~~~ 92 (275)
T 3vav_A 15 AVTVPKLQAMREA-GEKIAMLTCYDASFAALLDRANVDVQLIGDSLGNVLQGQTTTLPVTLDDIAYHTACVARAQ-PRAL 92 (275)
T ss_dssp CCCHHHHHHHHHH-TCCEEEEECCSHHHHHHHHHTTCSEEEECTTHHHHTTCCSSSTTCCHHHHHHHHHHHHHTC-CSSE
T ss_pred CcCHHHHHHHHHC-CCcEEEEeCcCHHHHHHHHHcCCCEEEECcHHHHHHcCCCCCCccCHHHHHHHHHHHHhcC-CCCC
Confidence 4577777777765 56888777766554 8999999955433221 1244444553 333 333333 2589
Q ss_pred EEEec---CCCCHHHHH----HHHHhCcCEEEec
Q 017781 279 VFLDG---GVRRGTDVF----KALALGASGIFIG 305 (366)
Q Consensus 279 vi~~G---GI~~~~dv~----kalalGAd~V~ig 305 (366)
|++|- |..++++++ +.+..||++|-|-
T Consensus 93 vvaD~pfgsY~s~~~a~~~a~rl~kaGa~aVklE 126 (275)
T 3vav_A 93 IVADLPFGTYGTPADAFASAVKLMRAGAQMVKFE 126 (275)
T ss_dssp EEEECCTTSCSSHHHHHHHHHHHHHTTCSEEEEE
T ss_pred EEEecCCCCCCCHHHHHHHHHHHHHcCCCEEEEC
Confidence 99995 456888875 5566899999885
|
| >3b0p_A TRNA-dihydrouridine synthase; TIM barrel, oxidoreductase; HET: FMN; 1.70A {Thermus thermophilus} PDB: 3b0u_X* 3b0v_C* | Back alignment and structure |
|---|
Probab=89.54 E-value=2.3 Score=40.53 Aligned_cols=38 Identities=18% Similarity=0.290 Sum_probs=31.5
Q ss_pred CCCHHHHHHHHHhc-CCCEEEEec-cCHHH----HHcCCcEEEEc
Q 017781 211 SLSWKDVKWLQTIT-KLPILVKGV-LTAED----VQAGAAGIIVS 249 (366)
Q Consensus 211 ~~~~~~i~~lr~~~-~~pv~vK~v-~~~~d----~~aGad~I~vs 249 (366)
...|+.++++++.+ ++||+.=|. .+.++ .+ |||+|.+.
T Consensus 182 ~~~~~~i~~ik~~~~~iPVianGgI~s~eda~~~l~-GaD~V~iG 225 (350)
T 3b0p_A 182 PLRHDWVHRLKGDFPQLTFVTNGGIRSLEEALFHLK-RVDGVMLG 225 (350)
T ss_dssp CCCHHHHHHHHHHCTTSEEEEESSCCSHHHHHHHHT-TSSEEEEC
T ss_pred cccHHHHHHHHHhCCCCeEEEECCcCCHHHHHHHHh-CCCEEEEC
Confidence 45799999999998 899998764 68887 55 99999874
|
| >2ekc_A AQ_1548, tryptophan synthase alpha chain; structural genomics, lyase, NPPSFA, national project on PROT structural and functional analyses; 2.00A {Aquifex aeolicus} | Back alignment and structure |
|---|
Probab=89.44 E-value=0.49 Score=43.31 Aligned_cols=37 Identities=22% Similarity=0.255 Sum_probs=30.4
Q ss_pred HHHHHHHHHhcCCCEEEEec-cCHHH---HHcCCcEEEEcC
Q 017781 214 WKDVKWLQTITKLPILVKGV-LTAED---VQAGAAGIIVSN 250 (366)
Q Consensus 214 ~~~i~~lr~~~~~pv~vK~v-~~~~d---~~aGad~I~vs~ 250 (366)
.+.++++|+.+++||.+-+. .++++ ..+|||+++|..
T Consensus 195 ~~~v~~vr~~~~~pv~vG~GI~t~e~~~~~~~gADgvIVGS 235 (262)
T 2ekc_A 195 KKKVEEYRELCDKPVVVGFGVSKKEHAREIGSFADGVVVGS 235 (262)
T ss_dssp HHHHHHHHHHCCSCEEEESSCCSHHHHHHHHTTSSEEEECH
T ss_pred HHHHHHHHhhcCCCEEEeCCCCCHHHHHHHHcCCCEEEECH
Confidence 46789999999999999855 45877 788999999854
|
| >1wv2_A Thiazole moeity, thiazole biosynthesis protein THIG; structural genomics, protein structure initiative, PSI; 2.90A {Pseudomonas aeruginosa} SCOP: c.1.31.1 | Back alignment and structure |
|---|
Probab=89.43 E-value=1.5 Score=40.22 Aligned_cols=104 Identities=21% Similarity=0.300 Sum_probs=75.2
Q ss_pred CceEEEeeec-------CCHHHHHHHHHHHHHcCCCEEEEecCCCCCcchhHHHhhhcCCCCccccccccccccCCCccc
Q 017781 123 GIRFFQLYVY-------KDRNVVAQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLTLKNFQGLDLGKMDEA 195 (366)
Q Consensus 123 ~~~~~Qly~~-------~d~~~~~~~l~ra~~~G~~ai~vtvd~p~~g~r~~d~~~~~~~p~~~~~~~~~~~~~~~~~~~ 195 (366)
+..|++|++- .|...+.+..+++.+.|++.+.++.|.|..++|..++...+-+|.+-
T Consensus 102 ~~~~iKlEv~~d~~~llpD~~~tv~aa~~L~~~Gf~Vlpy~~dd~~~akrl~~~G~~aVmPlg~---------------- 165 (265)
T 1wv2_A 102 GHNLVKLEVLADQKTLFPNVVETLKAAEQLVKDGFDVMVYTSDDPIIARQLAEIGCIAVMPLAG---------------- 165 (265)
T ss_dssp SCCEEEECCBSCTTTCCBCHHHHHHHHHHHHTTTCEEEEEECSCHHHHHHHHHSCCSEEEECSS----------------
T ss_pred CCCeEEEEeecCccccCcCHHHHHHHHHHHHHCCCEEEEEeCCCHHHHHHHHHhCCCEEEeCCc----------------
Confidence 4569998875 67777777777777789999988889998888887765333222100
Q ss_pred cchhhHHHhhhccCCCCCHHHHHHHHHhcCCCEEEE-eccCHHH----HHcCCcEEEEcC
Q 017781 196 NDSGLAAYVAGQIDRSLSWKDVKWLQTITKLPILVK-GVLTAED----VQAGAAGIIVSN 250 (366)
Q Consensus 196 ~~~~~~~~~~~~~d~~~~~~~i~~lr~~~~~pv~vK-~v~~~~d----~~aGad~I~vs~ 250 (366)
.+.. +.+-.+++.|+.+++..++|||+. ++.+++| .+.|+|+|.|..
T Consensus 166 -------pIGs-G~Gi~~~~lI~~I~e~~~vPVI~eGGI~TPsDAa~AmeLGAdgVlVgS 217 (265)
T 1wv2_A 166 -------LIGS-GLGICNPYNLRIILEEAKVPVLVDAGVGTASDAAIAMELGCEAVLMNT 217 (265)
T ss_dssp -------STTC-CCCCSCHHHHHHHHHHCSSCBEEESCCCSHHHHHHHHHHTCSEEEESH
T ss_pred -------cCCC-CCCcCCHHHHHHHHhcCCCCEEEeCCCCCHHHHHHHHHcCCCEEEECh
Confidence 0000 112236889999999889999999 5678888 999999998854
|
| >1qop_A Tryptophan synthase alpha chain; lyase, carbon-oxygen lyase, tryptophan biosynthesis, pyridoxal phosphate; HET: IPL PLP; 1.4A {Salmonella typhimurium} SCOP: c.1.2.4 PDB: 1k8x_A* 1wbj_A* 2clk_A* 2j9z_A* 3cep_A* 1k8y_A* 1a5s_A* 1a50_A* 1c29_A* 1c8v_A* 1c9d_A* 1bks_A* 1cx9_A* 1fuy_A* 1cw2_A* 1k7e_A* 1k7f_A* 1k7x_A* 1k3u_A* 1k8z_A* ... | Back alignment and structure |
|---|
Probab=89.40 E-value=1.6 Score=39.84 Aligned_cols=38 Identities=29% Similarity=0.308 Sum_probs=31.5
Q ss_pred CHHHHHHHHHhcCCCEEEEecc-CHHH----HHcCCcEEEEcC
Q 017781 213 SWKDVKWLQTITKLPILVKGVL-TAED----VQAGAAGIIVSN 250 (366)
Q Consensus 213 ~~~~i~~lr~~~~~pv~vK~v~-~~~d----~~aGad~I~vs~ 250 (366)
..+.++++|+..++||.+-+.. ++++ ..+|||+++|..
T Consensus 193 ~~~~i~~lr~~~~~pi~vggGI~t~e~~~~~~~agAD~vVVGS 235 (268)
T 1qop_A 193 LHHLIEKLKEYHAAPALQGFGISSPEQVSAAVRAGAAGAISGS 235 (268)
T ss_dssp CHHHHHHHHHTTCCCEEEESSCCSHHHHHHHHHTTCSEEEECH
T ss_pred HHHHHHHHHhccCCcEEEECCCCCHHHHHHHHHcCCCEEEECh
Confidence 4678999999889999998665 4776 679999999854
|
| >3na8_A Putative dihydrodipicolinate synthetase; lyase; HET: MSE; 1.85A {Pseudomonas aeruginosa} | Back alignment and structure |
|---|
Probab=89.37 E-value=14 Score=34.51 Aligned_cols=176 Identities=14% Similarity=0.121 Sum_probs=96.4
Q ss_pred CceEecccccccccCChhhHHHHHHHHHcCCceec--C---CCCCCCHHHHhc-------c-CC-CceEEEeeecCCHHH
Q 017781 72 MPIMIAPTAMQKMAHPEGEYATARAASAAGTIMTL--S---SWSTSSVEEVAS-------T-GP-GIRFFQLYVYKDRNV 137 (366)
Q Consensus 72 ~Pi~iApm~~~~l~~~~~e~~la~aa~~~G~~~~v--s---~~~~~~~e~i~~-------~-~~-~~~~~Qly~~~d~~~ 137 (366)
.|.++.|+.-.+-...++-..+++-.-+.|+...+ + +..+.+.+|..+ . .+ .|.+...- ..+.+.
T Consensus 29 ~~a~vTPf~~dg~iD~~~l~~lv~~li~~Gv~Gi~v~GtTGE~~~Ls~~Er~~v~~~~v~~~~grvpViaGvg-~~~t~~ 107 (315)
T 3na8_A 29 IGYTITPFAADGGLDLPALGRSIERLIDGGVHAIAPLGSTGEGAYLSDPEWDEVVDFTLKTVAHRVPTIVSVS-DLTTAK 107 (315)
T ss_dssp EEECCCCBCTTSSBCHHHHHHHHHHHHHTTCSEEECSSGGGTGGGSCHHHHHHHHHHHHHHHTTSSCBEEECC-CSSHHH
T ss_pred EEEeeCcCCCCCCcCHHHHHHHHHHHHHcCCCEEEECccccChhhCCHHHHHHHHHHHHHHhCCCCcEEEecC-CCCHHH
Confidence 45556676432223333345677777778886543 2 344566665432 1 22 45666654 345666
Q ss_pred HHHHHHHHHHcCCCEEEEecCCCCCcchhHHHhhhcCCCCccccccccccccCCCccccchhhHHHhhhccCCCCCHHHH
Q 017781 138 VAQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLTLKNFQGLDLGKMDEANDSGLAAYVAGQIDRSLSWKDV 217 (366)
Q Consensus 138 ~~~~l~ra~~~G~~ai~vtvd~p~~g~r~~d~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~i 217 (366)
..++.+.++++|++++.+. +|..- + | ..+-..+..
T Consensus 108 ai~la~~A~~~Gadavlv~--~P~y~-~----------~--------------------------------s~~~l~~~f 142 (315)
T 3na8_A 108 TVRRAQFAESLGAEAVMVL--PISYW-K----------L--------------------------------NEAEVFQHY 142 (315)
T ss_dssp HHHHHHHHHHTTCSEEEEC--CCCSS-C----------C--------------------------------CHHHHHHHH
T ss_pred HHHHHHHHHhcCCCEEEEC--CCCCC-C----------C--------------------------------CHHHHHHHH
Confidence 7788899999999998873 23210 0 0 000012334
Q ss_pred HHHHHhcCCCEEEEec-------cCHHH-HHc-----CCcEEEEcCCCccCCCCCcchHHHHHHHHHHcCCCceEEEecC
Q 017781 218 KWLQTITKLPILVKGV-------LTAED-VQA-----GAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGG 284 (366)
Q Consensus 218 ~~lr~~~~~pv~vK~v-------~~~~d-~~a-----Gad~I~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~i~vi~~GG 284 (366)
+.+-+.+++||++=.+ ++++. .+. .+-+|.-+. ..+..+.++.+..++++.|+. |.
T Consensus 143 ~~va~a~~lPiilYn~P~~tg~~l~~~~~~~L~a~~pnIvgiKdss----------gd~~~~~~~~~~~~~~f~v~~-G~ 211 (315)
T 3na8_A 143 RAVGEAIGVPVMLYNNPGTSGIDMSVELILRIVREVDNVTMVKEST----------GDIQRMHKLRLLGEGRVPFYN-GC 211 (315)
T ss_dssp HHHHHHCSSCEEEEECHHHHSCCCCHHHHHHHHHHSTTEEEEEECS----------SCHHHHHHHHHHTTTCSCEEE-CC
T ss_pred HHHHHhCCCcEEEEeCcchhCcCCCHHHHHHHHhcCCCEEEEECCC----------CCHHHHHHHHHHcCCCEEEEe-Cc
Confidence 5555566777777654 23333 111 122222211 134455566666665666664 43
Q ss_pred CCCHHHHHHHHHhCcCEEEecHH
Q 017781 285 VRRGTDVFKALALGASGIFIGRP 307 (366)
Q Consensus 285 I~~~~dv~kalalGAd~V~igr~ 307 (366)
..-++.++++||+++.-+..
T Consensus 212 ---D~~~l~~l~~G~~G~is~~a 231 (315)
T 3na8_A 212 ---NPLALEAFVAGAKGWCSAAP 231 (315)
T ss_dssp ---GGGHHHHHHHTCSEEEESGG
T ss_pred ---hHHHHHHHHCCCCEEEechh
Confidence 33467889999999988864
|
| >3p3b_A Mandelate racemase/muconate lactonizing protein; enolase superfamily fold, galacturonate dehydratase, D-tartr galacturonate, lyase; HET: TAR; 1.65A {Geobacillus SP} PDB: 3ops_A* 3n4f_A* 3qpe_A* | Back alignment and structure |
|---|
Probab=89.23 E-value=1.2 Score=43.03 Aligned_cols=81 Identities=5% Similarity=-0.031 Sum_probs=58.4
Q ss_pred CHHHHHHHHHhc--CCCEEEEec--cCHHH--------HHcCCcEEEEcCCCccCCCCCcchHHHHHHHHHH-----cCC
Q 017781 213 SWKDVKWLQTIT--KLPILVKGV--LTAED--------VQAGAAGIIVSNHGARQLDYVPATIMALEEVVKA-----TQG 275 (366)
Q Consensus 213 ~~~~i~~lr~~~--~~pv~vK~v--~~~~d--------~~aGad~I~vs~~gg~~~~~~~~~~~~l~~i~~~-----~~~ 275 (366)
..+.++.+|+.+ +.+|.+-.- .+.++ .+.|+++|- +. .. ..++.+.++++. .
T Consensus 187 ~~e~v~avR~~~g~d~~l~vDan~~~~~~~ai~~~~~l~~~~i~~iE-------~P-~~-~d~~~~~~l~~~l~~~g~-- 255 (392)
T 3p3b_A 187 DIAIVRGISEVAGPAGKIMIDANNAYNLNLTKEVLAALSDVNLYWLE-------EA-FH-EDEALYEDLKEWLGQRGQ-- 255 (392)
T ss_dssp HHHHHHHHHHHHCTTCCEEEECTTCCCHHHHHHHHHHTTTSCEEEEE-------CS-SS-CCHHHHHHHHHHHHHHTC--
T ss_pred HHHHHHHHHHHhCCCCeEEEECCCCCCHHHHHHHHHHHHhcCCCEEe-------cC-Cc-ccHHHHHHHHHhhccCCC--
Confidence 456788888876 477777632 35554 455666553 11 11 356778888877 5
Q ss_pred CceEEEecCCCCHHHHHHHHHhC-cCEEEec
Q 017781 276 RIPVFLDGGVRRGTDVFKALALG-ASGIFIG 305 (366)
Q Consensus 276 ~i~vi~~GGI~~~~dv~kalalG-Ad~V~ig 305 (366)
++||++++ +.+..++.+++..| +|.|++-
T Consensus 256 ~iPIa~dE-~~~~~~~~~~i~~~~~d~v~ik 285 (392)
T 3p3b_A 256 NVLIADGE-GLASPHLIEWATRGRVDVLQYD 285 (392)
T ss_dssp CCEEEECC-SSCCTTHHHHHHTTSCCEECCB
T ss_pred CccEEecC-CCCHHHHHHHHHcCCCCEEEeC
Confidence 79999999 99999999999998 7999884
|
| >3fs2_A 2-dehydro-3-deoxyphosphooctonate aldolase; ssgcid, bruciellla melitensis, DAHP synthetase I, cytoplasm, lipopolysaccharide biosynthesis; HET: PG4; 1.85A {Brucella melitensis} | Back alignment and structure |
|---|
Probab=89.19 E-value=0.87 Score=42.59 Aligned_cols=91 Identities=23% Similarity=0.268 Sum_probs=56.4
Q ss_pred CHHHHHHHHHhcCCCEEEEecc--CHHH--------HHcCCcEEEEcCCCccCCCCC--cchHHHHHHHHHHcCCCceEE
Q 017781 213 SWKDVKWLQTITKLPILVKGVL--TAED--------VQAGAAGIIVSNHGARQLDYV--PATIMALEEVVKATQGRIPVF 280 (366)
Q Consensus 213 ~~~~i~~lr~~~~~pv~vK~v~--~~~d--------~~aGad~I~vs~~gg~~~~~~--~~~~~~l~~i~~~~~~~i~vi 280 (366)
+.+.++++- .+++||++|..+ +++| .+.|.+-|++--.|- ..... ...+..++.+++ . .+||+
T Consensus 144 n~~LLr~va-~~gkPVilK~Gms~t~~ei~~ave~i~~~Gn~~iiL~erg~-~y~~~~~~vdl~~i~~lk~-~--~~PV~ 218 (298)
T 3fs2_A 144 QTDLLIAAA-RTGRVVNVKKGQFLAPWDMKNVLAKITESGNPNVLATERGV-SFGYNTLVSDMRALPIMAG-L--GAPVI 218 (298)
T ss_dssp CHHHHHHHH-HTTSEEEEECCTTCCGGGHHHHHHHHHTTTCCCEEEEECCE-ECSSSCEECCTTHHHHHHT-T--TSCEE
T ss_pred CHHHHHHHH-ccCCcEEEeCCCCCCHHHHHHHHHHHHHcCCCeEEEEECCC-CCCCCCCccCHHHHHHHHH-c--CCcEE
Confidence 445566665 468999999764 6655 667877676643332 11111 124566777666 5 79999
Q ss_pred Ee---------------cCCCCHH--HHHHHHHhCcCEEEecHHH
Q 017781 281 LD---------------GGVRRGT--DVFKALALGASGIFIGRPV 308 (366)
Q Consensus 281 ~~---------------GGI~~~~--dv~kalalGAd~V~igr~~ 308 (366)
+| ||.|.-- -...|+++|||+++|-.-|
T Consensus 219 ~D~sHsvq~p~~~~~~s~G~r~~v~~~a~AAvAlGAdGl~IE~H~ 263 (298)
T 3fs2_A 219 FDATHSVQQPGGQGGSTGGQREFVETLARAAVAVGVAGFFIETHE 263 (298)
T ss_dssp EEHHHHTCCCC--------CGGGHHHHHHHHHHHCCSEEEEEEES
T ss_pred EcCCCccccCCcccCCCCCchhhHHHHHHHHHHcCCCEEEEEecC
Confidence 96 3433322 2447889999999998754
|
| >3gka_A N-ethylmaleimide reductase; decode biostructures, ssgcid, niaid, targetdb bupsa00093A, structural genomics; HET: FMN; 2.30A {Burkholderia pseudomallei} SCOP: c.1.4.0 | Back alignment and structure |
|---|
Probab=89.19 E-value=4.2 Score=38.94 Aligned_cols=87 Identities=11% Similarity=0.064 Sum_probs=45.3
Q ss_pred eeEcCcccCCceEecccccccccCChh---hHHHHHHHHHcCCceecCCCCCCCHHHHhccCCCceEEEeeecCCHHHHH
Q 017781 63 TTVLGFKISMPIMIAPTAMQKMAHPEG---EYATARAASAAGTIMTLSSWSTSSVEEVASTGPGIRFFQLYVYKDRNVVA 139 (366)
Q Consensus 63 t~l~g~~l~~Pi~iApm~~~~l~~~~~---e~~la~aa~~~G~~~~vs~~~~~~~e~i~~~~~~~~~~Qly~~~d~~~~~ 139 (366)
.+|.+.++++-|++|||+-.. ..+++ +..+.--.+++..++++.+....+.+ ....+. -.-+|....-+..+
T Consensus 16 ~~ig~~~lkNRiv~aPm~~~~-a~~~g~pt~~~~~yY~~rA~~GLIite~~~V~~~--g~~~~~--~~gi~~d~~i~~~k 90 (361)
T 3gka_A 16 LTIGDLTLANRIIMAPLTRAR-AGDTRTPNALMARYYAERASAGLIISEATSVTPQ--GVGYAS--TPGIWSPEQVDGWR 90 (361)
T ss_dssp EEETTEEESCSEEECCCCCCC-STTTTCCCHHHHHHHHTTTTSSEEEEEEEESSGG--GCCSTT--CCBSSSHHHHHHHH
T ss_pred eeECCEEecCccEECCCCCCc-cCCCCCCCHHHHHHHHHHHhCCEEEEcceeeccc--ccCCCC--CCccCCHHHHHHHH
Confidence 578899999999999997532 32333 22222222222245555544333321 111221 11133222234466
Q ss_pred HHHHHHHHcCCCEEE
Q 017781 140 QLVRRAERAGFKAIA 154 (366)
Q Consensus 140 ~~l~ra~~~G~~ai~ 154 (366)
++.+.+.+.|++.++
T Consensus 91 ~l~~avH~~G~~i~~ 105 (361)
T 3gka_A 91 LVTDAVHAAGGRIFL 105 (361)
T ss_dssp HHHHHHHHTTCCEEE
T ss_pred HHHHHHHhcCCeEEE
Confidence 777888888987643
|
| >2isw_A Putative fructose-1,6-bisphosphate aldolase; class II fructose-1,6-bisphosphate aldolase, glycolytic pathway, giardia lamblia, drug target; HET: PGH; 1.75A {Giardia intestinalis} PDB: 2isv_A* 3ohi_A* 3gay_A* 3gak_A* 3gb6_A* | Back alignment and structure |
|---|
Probab=88.79 E-value=6.9 Score=36.90 Aligned_cols=100 Identities=16% Similarity=0.215 Sum_probs=69.5
Q ss_pred HHcCCcEEEEcC---CCccCCCCCcc----hHHHHHHHHHHcCCCceEEEecCC----------------------CCHH
Q 017781 239 VQAGAAGIIVSN---HGARQLDYVPA----TIMALEEVVKATQGRIPVFLDGGV----------------------RRGT 289 (366)
Q Consensus 239 ~~aGad~I~vs~---~gg~~~~~~~~----~~~~l~~i~~~~~~~i~vi~~GGI----------------------~~~~ 289 (366)
.+.|+|.+-++. ||-+... +.+ .++.|.+|.+.+ ++|+..=||= -.-+
T Consensus 163 ~~TgvD~LAvaiGt~HG~Yk~~-~~p~~~L~~~~L~~I~~~~--~vpLVlHGgSsvp~~~~~~~~~~gg~~~~~~Gvp~e 239 (323)
T 2isw_A 163 ELTGVDALAVAIGTSHGAYKFK-SESDIRLAIDRVKTISDLT--GIPLVMHGSSSVPKDVKDMINKYGGKMPDAVGVPIE 239 (323)
T ss_dssp HHHCCSEEEECSSCCSSSBCCC-C----CCCCHHHHHHHHHH--CSCEEECSCCCCCHHHHHHHHHTTCCCTTCBCCCHH
T ss_pred HHHCCCEEEEecCccccccCCC-CCcccccCHHHHHHHHHHh--CCCeEEECCCCCCHHHHHHHHHhccccccCCCCCHH
Confidence 678999999874 5533211 333 367899999988 7999999943 1457
Q ss_pred HHHHHHHhCcCEEEecHHHHHHhhh-------cC-----H-HHHHHHHHHHHHHHHHHHHHcCCC
Q 017781 290 DVFKALALGASGIFIGRPVVYSLAA-------EG-----E-KGVRRVLEMLREEFELAMALSGCR 341 (366)
Q Consensus 290 dv~kalalGAd~V~igr~~l~~l~~-------~G-----~-~gv~~~~~~l~~el~~~m~~~G~~ 341 (366)
++.||+.+|..-|-|++-+-++... .. + .-+....+.+++.++..|..+|+.
T Consensus 240 ~i~~ai~~GV~KiNi~Tdl~~A~~~~vr~~~~~~~~~~dpr~~l~~~~~a~~~~v~~~~~~~gs~ 304 (323)
T 2isw_A 240 SIVHAIGEGVCKINVDSDSRMAMTGAIRKVFVEHPEKFDPRDYLGPGRDAITEMLIPKIKAFGSA 304 (323)
T ss_dssp HHHHHHHTTEEEEEECHHHHHHHHHHHHHHHHHCTTCCCTHHHHHHHHHHHHHHHHHHHHHHTCT
T ss_pred HHHHHHHCCCeEEEEChHHHHHHHHHHHHHHHhccccCChHHHHHHHHHHHHHHHHHHHHHhCCC
Confidence 8999999999999999976554211 01 1 123334467888888889999875
|
| >1z41_A YQJM, probable NADH-dependent flavin oxidoreductase YQJ; FMN, beta-alpha-barrel; HET: FMN; 1.30A {Bacillus subtilis} SCOP: c.1.4.1 PDB: 1z42_A* 1z44_A* 1z48_A* | Back alignment and structure |
|---|
Probab=88.54 E-value=3.8 Score=38.66 Aligned_cols=86 Identities=12% Similarity=0.086 Sum_probs=57.9
Q ss_pred CCceEEEeee------cCCHHHHHHHHHHHHHcCCCEEEEecCCCCCcchhHHHhhhcCCCCccccccccccccCCCccc
Q 017781 122 PGIRFFQLYV------YKDRNVVAQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLTLKNFQGLDLGKMDEA 195 (366)
Q Consensus 122 ~~~~~~Qly~------~~d~~~~~~~l~ra~~~G~~ai~vtvd~p~~g~r~~d~~~~~~~p~~~~~~~~~~~~~~~~~~~ 195 (366)
.-+.++.|.. ..+.+...+++++++++|++.|.++...... .. .|
T Consensus 209 ~~pv~vris~~~~~~~g~~~~~~~~~a~~l~~~Gvd~i~v~~~~~~~--------~~--~~------------------- 259 (338)
T 1z41_A 209 DGPLFVRVSASDYTDKGLDIADHIGFAKWMKEQGVDLIDCSSGALVH--------AD--IN------------------- 259 (338)
T ss_dssp CSCEEEEEECCCCSTTSCCHHHHHHHHHHHHHTTCCEEEEECCCSSC--------CC--CC-------------------
T ss_pred CCcEEEEecCcccCCCCCCHHHHHHHHHHHHHcCCCEEEEecCcccc--------CC--CC-------------------
Confidence 4466777654 2356667788889999999998775321100 00 00
Q ss_pred cchhhHHHhhhccCCCCCHHHHHHHHHhcCCCEEEEecc-CHHH----HHcC-CcEEEE
Q 017781 196 NDSGLAAYVAGQIDRSLSWKDVKWLQTITKLPILVKGVL-TAED----VQAG-AAGIIV 248 (366)
Q Consensus 196 ~~~~~~~~~~~~~d~~~~~~~i~~lr~~~~~pv~vK~v~-~~~d----~~aG-ad~I~v 248 (366)
..+...++.++++|+.+++||+.-|.. +.++ .+.| ||.|.+
T Consensus 260 ------------~~~~~~~~~~~~ir~~~~iPVi~~Ggi~s~~~a~~~l~~G~aD~V~i 306 (338)
T 1z41_A 260 ------------VFPGYQVSFAEKIREQADMATGAVGMITDGSMAEEILQNGRADLIFI 306 (338)
T ss_dssp ------------CCTTTTHHHHHHHHHHHCCEEEECSSCCSHHHHHHHHHTTSCSEEEE
T ss_pred ------------CCccchHHHHHHHHHHCCCCEEEECCCCCHHHHHHHHHcCCceEEee
Confidence 012346788999999999999987654 7776 7777 999976
|
| >1v5x_A PRA isomerase, phosphoribosylanthranilate isomerase; alpha-beta barrel, TRPF, riken structural genomics/proteomics initiative, RSGI; 2.00A {Thermus thermophilus} SCOP: c.1.2.4 | Back alignment and structure |
|---|
Probab=88.51 E-value=5.6 Score=34.85 Aligned_cols=57 Identities=16% Similarity=0.213 Sum_probs=41.1
Q ss_pred CcEEEEcCC-Cc--cCCCCCcchHHHHHHHHHHcCCCceEEEecCCCCHHHHHHHHHhCcCEEEecHHH
Q 017781 243 AAGIIVSNH-GA--RQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFIGRPV 308 (366)
Q Consensus 243 ad~I~vs~~-gg--~~~~~~~~~~~~l~~i~~~~~~~i~vi~~GGI~~~~dv~kalalGAd~V~igr~~ 308 (366)
+|++.+... || ...|| +.++++.. ...|++..||+ +++.+.+|+.+++.+|=+.+-+
T Consensus 118 ~d~~LlD~~~gGtG~~fdW-----~~l~~~~~---~~~p~~LAGGL-~peNV~~ai~~~p~gVDvsSGv 177 (203)
T 1v5x_A 118 AQALLLDGKRPGSGEAYPR-----AWAKPLLA---TGRRVILAGGI-APENLEEVLALRPYALDLASGV 177 (203)
T ss_dssp CSEEEEECSSTTSCCCCCG-----GGGHHHHH---TTSCEEECSSC-CSTTHHHHHHHCCSEEEESGGG
T ss_pred CCEEEEcCCCCCCCCccCH-----HHHHhhhc---cCCcEEEECCC-CHHHHHHHHhcCCCEEEeCCce
Confidence 899998864 33 33444 33443211 25799999999 7889999997799999998754
|
| >3fok_A Uncharacterized protein CGL0159; CGL0159 ,brevibacterium flavum., structural genomics, PSI-2, protein structure initiative; 2.50A {Corynebacterium glutamicum} | Back alignment and structure |
|---|
Probab=88.23 E-value=1.6 Score=40.81 Aligned_cols=58 Identities=28% Similarity=0.496 Sum_probs=42.4
Q ss_pred HHcCCc----EEEEcCCCccCCCCCcchHHHHHHHHHHcCCCceEEEecCCCC--HHHHH----HHHH-hCcCEEEecHH
Q 017781 239 VQAGAA----GIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRR--GTDVF----KALA-LGASGIFIGRP 307 (366)
Q Consensus 239 ~~aGad----~I~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~i~vi~~GGI~~--~~dv~----kala-lGAd~V~igr~ 307 (366)
.+.|+| .|.+-= + +...++.+.. .+||+..||=.+ .++++ .++. .||.++.+||-
T Consensus 210 aELGADs~~tivK~~y----------~--e~f~~Vv~a~--~vPVViaGG~k~~~~~e~L~~v~~A~~~aGa~Gv~vGRN 275 (307)
T 3fok_A 210 AGLGNDSSYTWMKLPV----------V--EEMERVMEST--TMPTLLLGGEGGNDPDATFASWEHALTLPGVRGLTVGRT 275 (307)
T ss_dssp HTCSSCCSSEEEEEEC----------C--TTHHHHGGGC--SSCEEEECCSCC--CHHHHHHHHHHTTSTTEEEEEECTT
T ss_pred HHhCCCcCCCEEEeCC----------c--HHHHHHHHhC--CCCEEEeCCCCCCCHHHHHHHHHHHHHhCCCeEEeechh
Confidence 889999 888621 1 3346666666 699999998874 45655 5667 59999999998
Q ss_pred HHH
Q 017781 308 VVY 310 (366)
Q Consensus 308 ~l~ 310 (366)
+++
T Consensus 276 IfQ 278 (307)
T 3fok_A 276 LLY 278 (307)
T ss_dssp TSS
T ss_pred hcc
Confidence 754
|
| >1mzh_A Deoxyribose-phosphate aldolase; alpha-beta barrel, structural genomics, PSI, protein structure initiative; 2.00A {Aquifex aeolicus} SCOP: c.1.10.1 | Back alignment and structure |
|---|
Probab=88.22 E-value=4.4 Score=35.98 Aligned_cols=83 Identities=20% Similarity=0.316 Sum_probs=55.2
Q ss_pred hccCCCceEEEe---eecCCHHHHHHHHHHHHHcCCCEEEEecCCCCCcchhHHHhhhcCCCCccccccccccccCCCcc
Q 017781 118 ASTGPGIRFFQL---YVYKDRNVVAQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLTLKNFQGLDLGKMDE 194 (366)
Q Consensus 118 ~~~~~~~~~~Ql---y~~~d~~~~~~~l~ra~~~G~~ai~vtvd~p~~g~r~~d~~~~~~~p~~~~~~~~~~~~~~~~~~ 194 (366)
++..+ |.++.+ -...+.+.+.++.+.++++|++++.. ++ ++.
T Consensus 112 ~~a~~-pv~vKvi~e~~~l~~~~~~~~a~~a~eaGad~I~t--st------------g~~-------------------- 156 (225)
T 1mzh_A 112 FRETP-SAVHKVIVETPYLNEEEIKKAVEICIEAGADFIKT--ST------------GFA-------------------- 156 (225)
T ss_dssp HHTCT-TSEEEEECCGGGCCHHHHHHHHHHHHHHTCSEEEC--CC------------SCS--------------------
T ss_pred HHHhc-CceEEEEEeCCCCCHHHHHHHHHHHHHhCCCEEEE--CC------------CCC--------------------
Confidence 33443 667776 33346666788888999999999832 21 110
Q ss_pred ccchhhHHHhhhccCCCCCHHHHHHHHHhc--CCCEEEEe-ccCHHH----HHcCCcEEEEc
Q 017781 195 ANDSGLAAYVAGQIDRSLSWKDVKWLQTIT--KLPILVKG-VLTAED----VQAGAAGIIVS 249 (366)
Q Consensus 195 ~~~~~~~~~~~~~~d~~~~~~~i~~lr~~~--~~pv~vK~-v~~~~d----~~aGad~I~vs 249 (366)
.+..+|+.++.+++.+ ++||+.=| +.+.+| .++|||.|-++
T Consensus 157 --------------~gga~~~~i~~v~~~v~~~ipVia~GGI~t~~da~~~l~aGA~~iG~s 204 (225)
T 1mzh_A 157 --------------PRGTTLEEVRLIKSSAKGRIKVKASGGIRDLETAISMIEAGADRIGTS 204 (225)
T ss_dssp --------------SSCCCHHHHHHHHHHHTTSSEEEEESSCCSHHHHHHHHHTTCSEEEES
T ss_pred --------------CCCCCHHHHHHHHHHhCCCCcEEEECCCCCHHHHHHHHHhCchHHHHc
Confidence 1124788999999887 57777665 467777 88999976443
|
| >3bo9_A Putative nitroalkan dioxygenase; TM0800, structural genomics center for structural genomics, JCSG, protein structure INI PSI-2; HET: MSE 2PE; 2.71A {Thermotoga maritima MSB8} | Back alignment and structure |
|---|
Probab=88.06 E-value=2.4 Score=39.86 Aligned_cols=76 Identities=17% Similarity=0.144 Sum_probs=54.6
Q ss_pred HHHHHHHHhcCCCEEEEecc---CHHH-----HHcCCcEEEEcCCCccCCCCCcchHHHHHHHHHHcCCCceEEEecCCC
Q 017781 215 KDVKWLQTITKLPILVKGVL---TAED-----VQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVR 286 (366)
Q Consensus 215 ~~i~~lr~~~~~pv~vK~v~---~~~d-----~~aGad~I~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~i~vi~~GGI~ 286 (366)
+.++++++.++.|+.+.... +.++ .++|+|.|.++. | .+ .+.+..+++ . .++|+. ++.
T Consensus 67 ~~i~~i~~~~~~p~gVnl~~~~~~~~~~~~~~~~~g~d~V~l~~--g------~p-~~~~~~l~~-~--g~~v~~--~v~ 132 (326)
T 3bo9_A 67 KAISELRQKTDKPFGVNIILVSPWADDLVKVCIEEKVPVVTFGA--G------NP-TKYIRELKE-N--GTKVIP--VVA 132 (326)
T ss_dssp HHHHHHHTTCSSCEEEEEETTSTTHHHHHHHHHHTTCSEEEEES--S------CC-HHHHHHHHH-T--TCEEEE--EES
T ss_pred HHHHHHHHhcCCCEEEEEeccCCCHHHHHHHHHHCCCCEEEECC--C------Cc-HHHHHHHHH-c--CCcEEE--EcC
Confidence 45788888778899888664 2233 789999998733 2 12 334444443 2 577775 588
Q ss_pred CHHHHHHHHHhCcCEEEe
Q 017781 287 RGTDVFKALALGASGIFI 304 (366)
Q Consensus 287 ~~~dv~kalalGAd~V~i 304 (366)
+.+++.++...|||++.+
T Consensus 133 s~~~a~~a~~~GaD~i~v 150 (326)
T 3bo9_A 133 SDSLARMVERAGADAVIA 150 (326)
T ss_dssp SHHHHHHHHHTTCSCEEE
T ss_pred CHHHHHHHHHcCCCEEEE
Confidence 999999999999999998
|
| >1rvg_A Fructose-1,6-bisphosphate aldolase; class II aldolase, metal-depdendent aldolase, lyase; 2.00A {Thermus aquaticus} SCOP: c.1.10.2 PDB: 1rv8_A 2fjk_A* | Back alignment and structure |
|---|
Probab=88.04 E-value=12 Score=35.02 Aligned_cols=101 Identities=24% Similarity=0.264 Sum_probs=69.5
Q ss_pred HHcCCcEEEEcC---CCccCCCCC-cchHHHHHHHHHHcCCCceEEEecCC---------------------C-CHHHHH
Q 017781 239 VQAGAAGIIVSN---HGARQLDYV-PATIMALEEVVKATQGRIPVFLDGGV---------------------R-RGTDVF 292 (366)
Q Consensus 239 ~~aGad~I~vs~---~gg~~~~~~-~~~~~~l~~i~~~~~~~i~vi~~GGI---------------------~-~~~dv~ 292 (366)
.+.|+|.+-++. ||-+..++. .-.++.|.+|.+.+ .+|+..=||= . .-+++.
T Consensus 163 ~~TgvD~LAvaiGt~HG~Yk~~g~p~L~~~~L~~I~~~~--~vpLVlHGgSsv~~~~~~~~~~~gg~~~~~~G~p~e~i~ 240 (305)
T 1rvg_A 163 ERTGADYLAVAIGTSHGAYKGKGRPFIDHARLERIARLV--PAPLVLHGASAVPPELVERFRASGGEIGEAAGIHPEDIK 240 (305)
T ss_dssp HHHCCSEEEECSSCCSSSBCSSSSCCCCHHHHHHHHHHC--CSCEEECSCCCCCHHHHHHHHHTTCCCCSCBCCCHHHHH
T ss_pred HHHCCCEEEEecCccccccCCCCCCccCHHHHHHHHHhc--CCCEEEeCCCCCcHHHHHHHHhhccccccCCCCCHHHHH
Confidence 567999999874 554332222 23678999999998 6999998875 3 456788
Q ss_pred HHHHhCcCEEEecHHHHHHhhh-------cC-----H-HHHHHHHHHHHHHHHHHHHHcCCC
Q 017781 293 KALALGASGIFIGRPVVYSLAA-------EG-----E-KGVRRVLEMLREEFELAMALSGCR 341 (366)
Q Consensus 293 kalalGAd~V~igr~~l~~l~~-------~G-----~-~gv~~~~~~l~~el~~~m~~~G~~ 341 (366)
||+.+|..-|-|++-+-++... .. + .-+....+.+++.++..|..+|+.
T Consensus 241 ~ai~~GV~KiNi~Tdl~~A~~~~vr~~~~~~~~~~dpr~~l~~~~~a~~~~v~~~~~~~gs~ 302 (305)
T 1rvg_A 241 KAISLGIAKINTDTDLRLAFTALIREALNKNPKEFDPRKYLGPAREAVKEVVKSRMELFGSV 302 (305)
T ss_dssp HHHHTTEEEEEECHHHHHHHHHHHHHHHHHCTTCCCTHHHHHHHHHHHHHHHHHHHHHHTCT
T ss_pred HHHHCCCeEEEEChHHHHHHHHHHHHHHHhCccccChHHHHHHHHHHHHHHHHHHHHHhCCC
Confidence 9999999999999976554211 01 1 123334466777888888888864
|
| >3daq_A DHDPS, dihydrodipicolinate synthase; lysine biosynthesis, amino-ACI biosynthesis, diaminopimelate biosynthesis, lyase, schiff B; 1.45A {Staphylococcus aureus} SCOP: c.1.10.0 PDB: 3di1_A 3di0_A | Back alignment and structure |
|---|
Probab=88.01 E-value=16 Score=33.58 Aligned_cols=175 Identities=17% Similarity=0.143 Sum_probs=95.9
Q ss_pred CceEecccccccccCChhhHHHHHHHHHcCCceec-----CCCCCCCHHHHhc-------c-CC-CceEEEeeecCCHHH
Q 017781 72 MPIMIAPTAMQKMAHPEGEYATARAASAAGTIMTL-----SSWSTSSVEEVAS-------T-GP-GIRFFQLYVYKDRNV 137 (366)
Q Consensus 72 ~Pi~iApm~~~~l~~~~~e~~la~aa~~~G~~~~v-----s~~~~~~~e~i~~-------~-~~-~~~~~Qly~~~d~~~ 137 (366)
.|.++.|+.-. -...++-..+++-.-+.|+...+ |++.+.+.+|..+ . .. .|.+...- ..+.+.
T Consensus 8 ~~a~vTPf~~d-~iD~~~l~~lv~~li~~Gv~gl~v~GttGE~~~Lt~~Er~~v~~~~~~~~~grvpviaGvg-~~~t~~ 85 (292)
T 3daq_A 8 GVALTTPFTNN-KVNLEALKAHVNFLLENNAQAIIVNGTTAESPTLTTDEKELILKTVIDLVDKRVPVIAGTG-TNDTEK 85 (292)
T ss_dssp EEECCCCEETT-EECHHHHHHHHHHHHHTTCCEEEESSGGGTGGGSCHHHHHHHHHHHHHHHTTSSCEEEECC-CSCHHH
T ss_pred EEeeecCcCCC-CcCHHHHHHHHHHHHHcCCCEEEECccccccccCCHHHHHHHHHHHHHHhCCCCcEEEeCC-cccHHH
Confidence 34456666433 23333445677777778875543 3344566665422 1 22 35666654 346666
Q ss_pred HHHHHHHHHHcCCCEEEEecCCCCCcchhHHHhhhcCCCCccccccccccccCCCccccchhhHHHhhhccCCCCCHHHH
Q 017781 138 VAQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLTLKNFQGLDLGKMDEANDSGLAAYVAGQIDRSLSWKDV 217 (366)
Q Consensus 138 ~~~~l~ra~~~G~~ai~vtvd~p~~g~r~~d~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~i 217 (366)
..++.++++++|++++.+. +|... + | ..+-..+..
T Consensus 86 ai~la~~a~~~Gadavlv~--~P~y~-~----------~--------------------------------~~~~l~~~f 120 (292)
T 3daq_A 86 SIQASIQAKALGADAIMLI--TPYYN-K----------T--------------------------------NQRGLVKHF 120 (292)
T ss_dssp HHHHHHHHHHHTCSEEEEE--CCCSS-C----------C--------------------------------CHHHHHHHH
T ss_pred HHHHHHHHHHcCCCEEEEC--CCCCC-C----------C--------------------------------CHHHHHHHH
Confidence 7788999999999998874 23210 0 0 000012334
Q ss_pred HHHHHhcCCCEEEEec-------cCHHH----HHcC-CcEEEEcCCCccCCCCCcchHHHHHHHHHHcCC-CceEEEecC
Q 017781 218 KWLQTITKLPILVKGV-------LTAED----VQAG-AAGIIVSNHGARQLDYVPATIMALEEVVKATQG-RIPVFLDGG 284 (366)
Q Consensus 218 ~~lr~~~~~pv~vK~v-------~~~~d----~~aG-ad~I~vs~~gg~~~~~~~~~~~~l~~i~~~~~~-~i~vi~~GG 284 (366)
+.+-+.+++||++=.+ ++++. .+.. +-+|.-+. ..+..+.++.+..++ ++.|+ +|.
T Consensus 121 ~~ia~a~~lPiilYn~P~~tg~~l~~~~~~~La~~pnivgiK~ss----------gd~~~~~~~~~~~~~~~f~v~-~G~ 189 (292)
T 3daq_A 121 EAIADAVKLPVVLYNVPSRTNMTIEPETVEILSQHPYIVALKDAT----------NDFEYLEEVKKRIDTNSFALY-SGN 189 (292)
T ss_dssp HHHHHHHCSCEEEEECHHHHSCCCCHHHHHHHHTSTTEEEEEECC----------CCHHHHHHHHTTSCTTTSEEE-ESC
T ss_pred HHHHHhCCCCEEEEecccccCCCCCHHHHHHHhcCCCEEEEEeCC----------CCHHHHHHHHHHCCCCCEEEE-ECC
Confidence 5555566788887754 23333 2211 11121111 134556666666654 56554 453
Q ss_pred CCCHHHHHHHHHhCcCEEEecHH
Q 017781 285 VRRGTDVFKALALGASGIFIGRP 307 (366)
Q Consensus 285 I~~~~dv~kalalGAd~V~igr~ 307 (366)
...++.++++||+++.-+..
T Consensus 190 ---d~~~~~~l~~G~~G~is~~~ 209 (292)
T 3daq_A 190 ---DDNVVEYYQRGGQGVISVIA 209 (292)
T ss_dssp ---GGGHHHHHHTTCCEEEESGG
T ss_pred ---HHHHHHHHhcCCCEEEeCHH
Confidence 34478899999999988864
|
| >3sz8_A 2-dehydro-3-deoxyphosphooctonate aldolase 2; ssgcid, structural genomics, seattle structural genomics CEN infectious disease; 2.05A {Burkholderia pseudomallei} PDB: 3tmq_A* 3und_A* | Back alignment and structure |
|---|
Probab=87.88 E-value=1.8 Score=40.14 Aligned_cols=125 Identities=19% Similarity=0.283 Sum_probs=68.0
Q ss_pred CHHHHHHHHHhcCCCEEEEecc--CHHH--------HHcCCcEEEEcCCCccCCCCC--cchHHHHHHHHHHcCCCceEE
Q 017781 213 SWKDVKWLQTITKLPILVKGVL--TAED--------VQAGAAGIIVSNHGARQLDYV--PATIMALEEVVKATQGRIPVF 280 (366)
Q Consensus 213 ~~~~i~~lr~~~~~pv~vK~v~--~~~d--------~~aGad~I~vs~~gg~~~~~~--~~~~~~l~~i~~~~~~~i~vi 280 (366)
+.+.++++-+ +++||++|..+ +++| .+.|.+-|++--.|- ..... ...+..++.+++.. +.+||+
T Consensus 123 n~~LLr~va~-~gkPVilK~G~~~t~~ei~~ave~i~~~Gn~~i~L~erg~-~y~~~~~~vdl~~i~~lk~~~-~~~pV~ 199 (285)
T 3sz8_A 123 QTDLVVAIAK-AGKPVNVKKPQFMSPTQLKHVVSKCGEVGNDRVMLCERGS-SFGYDNLVVDMLGFRQMAETT-GGCPVI 199 (285)
T ss_dssp CHHHHHHHHH-TSSCEEEECCTTSCGGGTHHHHHHHHHTTCCCEEEEECCE-ECSSSCEECCTTHHHHHHHHT-TSCCEE
T ss_pred CHHHHHHHHc-cCCcEEEeCCCCCCHHHHHHHHHHHHHcCCCcEEEEeCCC-CCCCCcCccCHHHHHHHHHhC-CCCCEE
Confidence 4456666654 68999999764 6665 677887676643332 11111 12456677776654 138999
Q ss_pred Eec---------------CCCCH--HHHHHHHHhCcCEEEecHHHHHHh-hhcCHHHH-HHHHHHHHHHHHHHHHHcCC
Q 017781 281 LDG---------------GVRRG--TDVFKALALGASGIFIGRPVVYSL-AAEGEKGV-RRVLEMLREEFELAMALSGC 340 (366)
Q Consensus 281 ~~G---------------GI~~~--~dv~kalalGAd~V~igr~~l~~l-~~~G~~gv-~~~~~~l~~el~~~m~~~G~ 340 (366)
+|. |-|.- .-...|+++|||+++|-.-+--.- .+.|+..+ -+-++.|.++++..-..+|.
T Consensus 200 ~D~sHs~q~p~~~~~~s~G~r~~v~~~a~AAvA~GA~gl~IE~H~~pd~al~D~~~sl~p~el~~lv~~i~~i~~~lg~ 278 (285)
T 3sz8_A 200 FDVTHSLQCRDPLGDASGGRRRQVLDLARAGIAVGIAGLFLEAHPDPDRARCDGPSALPLHQLEGLLSQMKAIDDLVKR 278 (285)
T ss_dssp EETTTTCC---------------HHHHHHHHHHHCCSEEEEEEESCGGGCSCSSCCCEEGGGHHHHHHHHHHHHHHHTT
T ss_pred EeCCCccccCCCcCCCCCCchhhHHHHHHHHHHhCCCEEEEEeccChhccCCchhhccCHHHHHHHHHHHHHHHHHhCC
Confidence 963 32221 234578899999999987542111 12332110 01233455555555555554
|
| >1zlp_A PSR132, petal death protein; TIM-barrel, helix swapping,2-ethyl-3-methylmalate lyase, 2-P methylmalate lyase, lyase/PEP mutase superfamily; 2.70A {Dianthus caryophyllus} | Back alignment and structure |
|---|
Probab=87.82 E-value=9.2 Score=35.95 Aligned_cols=62 Identities=26% Similarity=0.239 Sum_probs=44.4
Q ss_pred HHcCCcEEEEcCCCccCCCCCcchHHHHHHHHHHcCCCceEEEe---cCCCCHHHHHHHHHhCcCEEEecHHHHHH
Q 017781 239 VQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLD---GGVRRGTDVFKALALGASGIFIGRPVVYS 311 (366)
Q Consensus 239 ~~aGad~I~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~i~vi~~---GGI~~~~dv~kalalGAd~V~igr~~l~~ 311 (366)
.++|||.|.+-+ +++.+.+.++.+.+ ++|++++ +|-...-++.+.-++|...|.++...+.+
T Consensus 199 ~eAGAd~i~~e~---------~~~~e~~~~i~~~l--~~P~lan~~~~g~~~~~~~~eL~~lGv~~v~~~~~~~ra 263 (318)
T 1zlp_A 199 KEAGADATFVEA---------PANVDELKEVSAKT--KGLRIANMIEGGKTPLHTPEEFKEMGFHLIAHSLTAVYA 263 (318)
T ss_dssp HHTTCSEEEECC---------CCSHHHHHHHHHHS--CSEEEEEECTTSSSCCCCHHHHHHHTCCEEEECSHHHHH
T ss_pred HHcCCCEEEEcC---------CCCHHHHHHHHHhc--CCCEEEEeccCCCCCCCCHHHHHHcCCeEEEEchHHHHH
Confidence 999999998732 35678888899888 6898543 33222223445556899999999877665
|
| >3fa4_A 2,3-dimethylmalate lyase; alpha/beta barrel, helix swapping; 2.18A {Aspergillus niger} PDB: 3fa3_A | Back alignment and structure |
|---|
Probab=87.77 E-value=7.7 Score=36.21 Aligned_cols=63 Identities=16% Similarity=0.150 Sum_probs=41.5
Q ss_pred HHcCCcEEEEcCCCccCCCCCcchHHHHHHHHHHcCCCceEEEe---cCCCCHHHHHHHHHhCcCEEEecHHHHHH
Q 017781 239 VQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLD---GGVRRGTDVFKALALGASGIFIGRPVVYS 311 (366)
Q Consensus 239 ~~aGad~I~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~i~vi~~---GGI~~~~dv~kalalGAd~V~igr~~l~~ 311 (366)
.++|||+|-+-+ +.+.+.+.++.+.++ .+|+.++ +|-...-.+.+.-++|.+.|..+...+.+
T Consensus 180 ~eAGAD~ifi~g---------~~~~~ei~~~~~~~~-~~Pl~~n~~~~g~~p~~~~~eL~~lGv~~v~~~~~~~ra 245 (302)
T 3fa4_A 180 RDAGADVGFLEG---------ITSREMARQVIQDLA-GWPLLLNMVEHGATPSISAAEAKEMGFRIIIFPFAALGP 245 (302)
T ss_dssp HTTTCSEEEETT---------CCCHHHHHHHHHHTT-TSCEEEECCTTSSSCCCCHHHHHHHTCSEEEETTTTHHH
T ss_pred HHcCCCEEeecC---------CCCHHHHHHHHHHhc-CCceeEEEecCCCCCCCCHHHHHHcCCCEEEEchHHHHH
Confidence 899999998733 345677788888874 3677663 33211123344445799999999877654
|
| >1m3u_A 3-methyl-2-oxobutanoate hydroxymethyltransferase; beta-alpha-barrel, TIM-barrel, ketopantoate, selenomethionin decamer; HET: KPL; 1.80A {Escherichia coli} SCOP: c.1.12.8 | Back alignment and structure |
|---|
Probab=87.68 E-value=16 Score=33.30 Aligned_cols=33 Identities=24% Similarity=0.293 Sum_probs=25.4
Q ss_pred HHcCCcEEEEcCCCccCCCCCcchHHHHHHHHHHcCCCceEEEec
Q 017781 239 VQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDG 283 (366)
Q Consensus 239 ~~aGad~I~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~i~vi~~G 283 (366)
.++|||+|++-. .+ .+...++.+.+ ++|+|.-|
T Consensus 171 ~eAGA~~ivlE~---------vp-~~~a~~it~~l--~iP~igIG 203 (264)
T 1m3u_A 171 EAAGAQLLVLEC---------VP-VELAKRITEAL--AIPVIGIG 203 (264)
T ss_dssp HHHTCCEEEEES---------CC-HHHHHHHHHHC--SSCEEEES
T ss_pred HHCCCcEEEEec---------CC-HHHHHHHHHhC--CCCEEEeC
Confidence 899999998733 23 35677888888 79999866
|
| >2v9d_A YAGE; dihydrodipicolinic acid synthase, N-acetyl neuraminate lyase, NAL, lyase, DHDPS, prophage; 2.15A {Escherichia coli} PDB: 2v8z_A 3nev_A* 3n2x_A* | Back alignment and structure |
|---|
Probab=87.67 E-value=13 Score=35.20 Aligned_cols=84 Identities=17% Similarity=0.098 Sum_probs=49.4
Q ss_pred CceEecccccccccCChhhHHHHHHHHHcCCcee--cC---CCCCCCHHHHhc-------c-CC-CceEEEeeecCCHHH
Q 017781 72 MPIMIAPTAMQKMAHPEGEYATARAASAAGTIMT--LS---SWSTSSVEEVAS-------T-GP-GIRFFQLYVYKDRNV 137 (366)
Q Consensus 72 ~Pi~iApm~~~~l~~~~~e~~la~aa~~~G~~~~--vs---~~~~~~~e~i~~-------~-~~-~~~~~Qly~~~d~~~ 137 (366)
.|.++.|+.-.+-...++-..+++-.-+.|+... ++ +..+.+.+|-.+ . .+ .|.+...- ..+.+.
T Consensus 36 ~~alvTPF~~dg~ID~~~l~~lv~~li~~Gv~Gl~v~GtTGE~~~Ls~eEr~~vi~~~ve~~~grvpViaGvg-~~st~e 114 (343)
T 2v9d_A 36 IPPVSTIFTADGQLDKPGTAALIDDLIKAGVDGLFFLGSGGEFSQLGAEERKAIARFAIDHVDRRVPVLIGTG-GTNARE 114 (343)
T ss_dssp CCEECCCBCTTSSBCHHHHHHHHHHHHHTTCSCEEESSTTTTGGGSCHHHHHHHHHHHHHHHTTSSCEEEECC-SSCHHH
T ss_pred EEeeECCCCCCCCcCHHHHHHHHHHHHHcCCCEEEeCccccChhhCCHHHHHHHHHHHHHHhCCCCcEEEecC-CCCHHH
Confidence 4566677642222223333466666667887543 33 334566665432 1 22 35666654 345666
Q ss_pred HHHHHHHHHHcCCCEEEEe
Q 017781 138 VAQLVRRAERAGFKAIALT 156 (366)
Q Consensus 138 ~~~~l~ra~~~G~~ai~vt 156 (366)
..++.+.|+++|++++.+.
T Consensus 115 ai~la~~A~~~Gadavlv~ 133 (343)
T 2v9d_A 115 TIELSQHAQQAGADGIVVI 133 (343)
T ss_dssp HHHHHHHHHHHTCSEEEEE
T ss_pred HHHHHHHHHhcCCCEEEEC
Confidence 7788899999999998874
|
| >3eb2_A Putative dihydrodipicolinate synthetase; lysine biosynthesis, pyruvate, TIM barrel, NYSGXRC, PSI2., structural genomics; HET: PGE; 2.04A {Rhodopseudomonas palustris} SCOP: c.1.10.0 | Back alignment and structure |
|---|
Probab=87.67 E-value=17 Score=33.54 Aligned_cols=84 Identities=8% Similarity=0.012 Sum_probs=50.1
Q ss_pred CceEecccccccccCChhhHHHHHHHHHcCCceec-----CCCCCCCHHHHhc-------c-CC-CceEEEeeecCCHHH
Q 017781 72 MPIMIAPTAMQKMAHPEGEYATARAASAAGTIMTL-----SSWSTSSVEEVAS-------T-GP-GIRFFQLYVYKDRNV 137 (366)
Q Consensus 72 ~Pi~iApm~~~~l~~~~~e~~la~aa~~~G~~~~v-----s~~~~~~~e~i~~-------~-~~-~~~~~Qly~~~d~~~ 137 (366)
.|.++.|+.-.+-...++-..+++-.-+.|+...+ |+..+.+.+|..+ . .. -|.+...- ..+.+.
T Consensus 9 ~~a~vTPf~~dg~iD~~~l~~lv~~li~~Gv~gl~v~GttGE~~~Ls~~Er~~v~~~~~~~~~grvpviaGvg-~~~t~~ 87 (300)
T 3eb2_A 9 FPYLVSPVDAEGRVRADVMGRLCDDLIQAGVHGLTPLGSTGEFAYLGTAQREAVVRATIEAAQRRVPVVAGVA-STSVAD 87 (300)
T ss_dssp EEBCCCCBCTTSCBCHHHHHHHHHHHHHTTCSCBBTTSGGGTGGGCCHHHHHHHHHHHHHHHTTSSCBEEEEE-ESSHHH
T ss_pred EEEEeccCCCCCCcCHHHHHHHHHHHHHcCCCEEEECccccCccccCHHHHHHHHHHHHHHhCCCCcEEEeCC-CCCHHH
Confidence 34455666422222233334666666778875543 3344567765432 1 22 35666664 356666
Q ss_pred HHHHHHHHHHcCCCEEEEe
Q 017781 138 VAQLVRRAERAGFKAIALT 156 (366)
Q Consensus 138 ~~~~l~ra~~~G~~ai~vt 156 (366)
..++.++++++|++++.+.
T Consensus 88 ai~la~~a~~~Gadavlv~ 106 (300)
T 3eb2_A 88 AVAQAKLYEKLGADGILAI 106 (300)
T ss_dssp HHHHHHHHHHHTCSEEEEE
T ss_pred HHHHHHHHHHcCCCEEEEc
Confidence 7788999999999998873
|
| >2vc6_A MOSA, dihydrodipicolinate synthase; DHDPS, TIM barrel, schiff base, lyase; HET: MCL; 1.95A {Sinorhizobium meliloti} | Back alignment and structure |
|---|
Probab=87.66 E-value=17 Score=33.42 Aligned_cols=174 Identities=14% Similarity=0.175 Sum_probs=95.7
Q ss_pred ceEecccccccccCChhhHHHHHHHHHcCCceec--C---CCCCCCHHHHhc-------c-CC-CceEEEeeecCCHHHH
Q 017781 73 PIMIAPTAMQKMAHPEGEYATARAASAAGTIMTL--S---SWSTSSVEEVAS-------T-GP-GIRFFQLYVYKDRNVV 138 (366)
Q Consensus 73 Pi~iApm~~~~l~~~~~e~~la~aa~~~G~~~~v--s---~~~~~~~e~i~~-------~-~~-~~~~~Qly~~~d~~~~ 138 (366)
|.++.|+ -.+-...++-..+++-.-+.|+...+ + +..+.+.+|-.+ . .. .|.+...- ..+.+..
T Consensus 7 ~a~vTPf-~dg~iD~~~l~~lv~~li~~Gv~gl~~~GttGE~~~Ls~~Er~~v~~~~~~~~~gr~pviaGvg-~~~t~~a 84 (292)
T 2vc6_A 7 TALVTPF-ADDRIDEVALHDLVEWQIEEGSFGLVPCGTTGESPTLSKSEHEQVVEITIKTANGRVPVIAGAG-SNSTAEA 84 (292)
T ss_dssp EECCCCE-ETTEECHHHHHHHHHHHHHTTCSEEETTSGGGTGGGSCHHHHHHHHHHHHHHHTTSSCBEEECC-CSSHHHH
T ss_pred EeeecCc-CCCCcCHHHHHHHHHHHHHcCCCEEEECccccChhhCCHHHHHHHHHHHHHHhCCCCcEEEecC-CccHHHH
Confidence 3344555 22223333345677777778876543 3 344566665432 1 22 45666654 3455667
Q ss_pred HHHHHHHHHcCCCEEEEecCCCCCcchhHHHhhhcCCCCccccccccccccCCCccccchhhHHHhhhccCCCCCHHHHH
Q 017781 139 AQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLTLKNFQGLDLGKMDEANDSGLAAYVAGQIDRSLSWKDVK 218 (366)
Q Consensus 139 ~~~l~ra~~~G~~ai~vtvd~p~~g~r~~d~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~i~ 218 (366)
.++.+.++++|++++.+. +|.. ++ | ...-..+..+
T Consensus 85 i~la~~A~~~Gadavlv~--~P~y-~~----------~--------------------------------s~~~l~~~f~ 119 (292)
T 2vc6_A 85 IAFVRHAQNAGADGVLIV--SPYY-NK----------P--------------------------------TQEGIYQHFK 119 (292)
T ss_dssp HHHHHHHHHTTCSEEEEE--CCCS-SC----------C--------------------------------CHHHHHHHHH
T ss_pred HHHHHHHHHcCCCEEEEc--CCCC-CC----------C--------------------------------CHHHHHHHHH
Confidence 788899999999998874 2321 00 0 0000123345
Q ss_pred HHHHhcCCCEEEEec-------cCHHH----HH-c-CCcEEEEcCCCccCCCCCcchHHHHHHHHHHcCCCceEEEecCC
Q 017781 219 WLQTITKLPILVKGV-------LTAED----VQ-A-GAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGV 285 (366)
Q Consensus 219 ~lr~~~~~pv~vK~v-------~~~~d----~~-a-Gad~I~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~i~vi~~GGI 285 (366)
.+.+.+++||++=.+ .+++. .+ . .+-+|.-+. ..+..+.++++..++++.|+ +|
T Consensus 120 ~ia~a~~lPiilYn~P~~tg~~l~~~~~~~La~~~pnIvgiK~s~----------gd~~~~~~~~~~~~~~f~v~-~G-- 186 (292)
T 2vc6_A 120 AIDAASTIPIIVYNIPGRSAIEIHVETLARIFEDCPNVKGVXDAT----------GNLLRPSLERMACGEDFNLL-TG-- 186 (292)
T ss_dssp HHHHHCSSCEEEEECHHHHSCCCCHHHHHHHHHHCTTEEEEEECS----------CCTHHHHHHHHHSCTTSEEE-ES--
T ss_pred HHHHhCCCCEEEEeCccccCcCCCHHHHHHHHhhCCCEEEEecCC----------CCHHHHHHHHHHcCCCEEEE-EC--
Confidence 566667888888643 34444 22 2 222333221 12334455656565567664 55
Q ss_pred CCHHHHHHHHHhCcCEEEecHH
Q 017781 286 RRGTDVFKALALGASGIFIGRP 307 (366)
Q Consensus 286 ~~~~dv~kalalGAd~V~igr~ 307 (366)
+...++.++++||+++.-+.+
T Consensus 187 -~d~~~~~~l~~G~~G~is~~~ 207 (292)
T 2vc6_A 187 -EDGTALGYMAHGGHGCISVTA 207 (292)
T ss_dssp -CGGGHHHHHHTTCCEEEESGG
T ss_pred -chHHHHHHHHcCCCEEEecHH
Confidence 244578899999999888764
|
| >3b8i_A PA4872 oxaloacetate decarboxylase; alpha/beta barrel, helix swapping, lyase; 1.90A {Pseudomonas aeruginosa} | Back alignment and structure |
|---|
Probab=87.65 E-value=12 Score=34.59 Aligned_cols=62 Identities=24% Similarity=0.333 Sum_probs=44.0
Q ss_pred HHcCCcEEEEcCCCccCCCCCcchHHHHHHHHHHcCCCceEEEe-cCCCCHHHHHHHHHhCcCEEEecHHHHHH
Q 017781 239 VQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLD-GGVRRGTDVFKALALGASGIFIGRPVVYS 311 (366)
Q Consensus 239 ~~aGad~I~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~i~vi~~-GGI~~~~dv~kalalGAd~V~igr~~l~~ 311 (366)
.++|||.|.+-+ +++.+.+.++.+.+ ++|++.. +|-...-++.+.-++|.+.|..|...+.+
T Consensus 178 ~eAGAd~i~~e~---------~~~~~~~~~i~~~~--~~P~ii~~~g~~~~~~~~eL~~lGv~~v~~~~~~~ra 240 (287)
T 3b8i_A 178 QEAGADGICLVG---------VRDFAHLEAIAEHL--HIPLMLVTYGNPQLRDDARLARLGVRVVVNGHAAYFA 240 (287)
T ss_dssp HHTTCSEEEEEC---------CCSHHHHHHHHTTC--CSCEEEECTTCGGGCCHHHHHHTTEEEEECCCHHHHH
T ss_pred HHcCCCEEEecC---------CCCHHHHHHHHHhC--CCCEEEeCCCCCCCCCHHHHHHcCCcEEEEChHHHHH
Confidence 899999998743 35677888888888 6887743 33322233445556999999999887765
|
| >3qze_A DHDPS, dihydrodipicolinate synthase; alpha beta barrel, cytoplasmic; 1.59A {Pseudomonas aeruginosa} PDB: 3puo_A* 3noe_A 3ps7_A* 3s8h_A | Back alignment and structure |
|---|
Probab=87.65 E-value=18 Score=33.71 Aligned_cols=176 Identities=16% Similarity=0.174 Sum_probs=95.8
Q ss_pred CceEecccccccccCChhhHHHHHHHHHcCCceec-----CCCCCCCHHHHhc-------c-CC-CceEEEeeecCCHHH
Q 017781 72 MPIMIAPTAMQKMAHPEGEYATARAASAAGTIMTL-----SSWSTSSVEEVAS-------T-GP-GIRFFQLYVYKDRNV 137 (366)
Q Consensus 72 ~Pi~iApm~~~~l~~~~~e~~la~aa~~~G~~~~v-----s~~~~~~~e~i~~-------~-~~-~~~~~Qly~~~d~~~ 137 (366)
.|.++.|+.-.+-...++-..+++-.-+.|+...+ |++.+.+.+|..+ . .+ .|.+...- ..+.+.
T Consensus 28 ~~a~vTPf~~dg~iD~~~l~~lv~~li~~Gv~Gl~v~GtTGE~~~Ls~~Er~~v~~~~v~~~~grvpViaGvg-~~st~e 106 (314)
T 3qze_A 28 MVALVTPFDAQGRLDWDSLAKLVDFHLQEGTNAIVAVGTTGESATLDVEEHIQVIRRVVDQVKGRIPVIAGTG-ANSTRE 106 (314)
T ss_dssp EEECCCCBCTTSCBCHHHHHHHHHHHHHHTCCEEEESSGGGTGGGCCHHHHHHHHHHHHHHHTTSSCEEEECC-CSSHHH
T ss_pred EEeeECCCCCCCCcCHHHHHHHHHHHHHcCCCEEEECccccChhhCCHHHHHHHHHHHHHHhCCCCcEEEeCC-CcCHHH
Confidence 35556666322222223334666666777875432 3344567665432 1 22 35666654 345666
Q ss_pred HHHHHHHHHHcCCCEEEEecCCCCCcchhHHHhhhcCCCCccccccccccccCCCccccchhhHHHhhhccCCCCCHHHH
Q 017781 138 VAQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLTLKNFQGLDLGKMDEANDSGLAAYVAGQIDRSLSWKDV 217 (366)
Q Consensus 138 ~~~~l~ra~~~G~~ai~vtvd~p~~g~r~~d~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~i 217 (366)
..++.+.++++|++++.+. +|... + | ...-..+..
T Consensus 107 ai~la~~A~~~Gadavlv~--~P~y~-~----------~--------------------------------s~~~l~~~f 141 (314)
T 3qze_A 107 AVALTEAAKSGGADACLLV--TPYYN-K----------P--------------------------------TQEGMYQHF 141 (314)
T ss_dssp HHHHHHHHHHTTCSEEEEE--CCCSS-C----------C--------------------------------CHHHHHHHH
T ss_pred HHHHHHHHHHcCCCEEEEc--CCCCC-C----------C--------------------------------CHHHHHHHH
Confidence 7788999999999998874 23210 0 0 000012345
Q ss_pred HHHHHhcCCCEEEEec-------cCHHH----HHc-CCcEEEEcCCCccCCCCCcchHHHHHHHHHHcCCCceEEEecCC
Q 017781 218 KWLQTITKLPILVKGV-------LTAED----VQA-GAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGV 285 (366)
Q Consensus 218 ~~lr~~~~~pv~vK~v-------~~~~d----~~a-Gad~I~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~i~vi~~GGI 285 (366)
+.+.+.+++||++=.+ .+++. .+. .+-+|.-+. ..+..+.++.+..++++.| .+|.
T Consensus 142 ~~va~a~~lPiilYn~P~~tg~~l~~~~~~~La~~pnIvgiKdss----------gd~~~~~~~~~~~~~~f~v-~~G~- 209 (314)
T 3qze_A 142 RHIAEAVAIPQILYNVPGRTSCDMLPETVERLSKVPNIIGIKEAT----------GDLQRAKEVIERVGKDFLV-YSGD- 209 (314)
T ss_dssp HHHHHHSCSCEEEEECHHHHSCCCCHHHHHHHHTSTTEEEEEECS----------CCHHHHHHHHHHSCTTSEE-EESC-
T ss_pred HHHHHhcCCCEEEEeCccccCCCCCHHHHHHHhcCCCEEEEEcCC----------CCHHHHHHHHHHcCCCeEE-EecC-
Confidence 5566667888887754 23333 211 112222111 2344555666666556665 4453
Q ss_pred CCHHHHHHHHHhCcCEEEecHH
Q 017781 286 RRGTDVFKALALGASGIFIGRP 307 (366)
Q Consensus 286 ~~~~dv~kalalGAd~V~igr~ 307 (366)
..-++.++++||+++.-+..
T Consensus 210 --d~~~l~~l~~Ga~G~is~~a 229 (314)
T 3qze_A 210 --DATAVELMLLGGKGNISVTA 229 (314)
T ss_dssp --GGGHHHHHHTTCCEEEESGG
T ss_pred --hHHHHHHHHCCCCEEEecHH
Confidence 23478899999999987764
|
| >1f76_A Dihydroorotate dehydrogenase; monomer, alpha-beta-barrel, FMN binding domain, orotate complex, oxidoreductase; HET: MSE FMN ORO; 2.50A {Bacteria} SCOP: c.1.4.1 | Back alignment and structure |
|---|
Probab=87.51 E-value=2 Score=40.49 Aligned_cols=100 Identities=18% Similarity=0.127 Sum_probs=60.5
Q ss_pred CceEEEeeecCCHHHHHHHHHHHHHcCCCEEEEecCCCCCcchhHHHhhhcCCCCccccccccccccCCCccccchhhHH
Q 017781 123 GIRFFQLYVYKDRNVVAQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLTLKNFQGLDLGKMDEANDSGLAA 202 (366)
Q Consensus 123 ~~~~~Qly~~~d~~~~~~~l~ra~~~G~~ai~vtvd~p~~g~r~~d~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~ 202 (366)
.|.++.+....+.+.+.++++.++++|+++|.++-.... |. +.+ .+. .. .... +.
T Consensus 212 ~Pv~vKi~~~~~~~~~~~~a~~l~~~Gvd~i~vsn~~~~---~~-~~~----~~~---~~----------~~~g--g~-- 266 (336)
T 1f76_A 212 VPIAVKIAPDLSEEELIQVADSLVRHNIDGVIATNTTLD---RS-LVQ----GMK---NC----------DQTG--GL-- 266 (336)
T ss_dssp CCEEEECCSCCCHHHHHHHHHHHHHTTCSEEEECCCBCC---CT-TST----TST---TT----------TCSS--EE--
T ss_pred CceEEEecCCCCHHHHHHHHHHHHHcCCcEEEEeCCccc---cc-ccc----ccc---cc----------ccCC--Cc--
Confidence 578888765556666788889999999999988632111 11 100 000 00 0000 00
Q ss_pred HhhhccCCCCCHHHHHHHHHhc--CCCEEEEe-ccCHHH----HHcCCcEEEEc
Q 017781 203 YVAGQIDRSLSWKDVKWLQTIT--KLPILVKG-VLTAED----VQAGAAGIIVS 249 (366)
Q Consensus 203 ~~~~~~d~~~~~~~i~~lr~~~--~~pv~vK~-v~~~~d----~~aGad~I~vs 249 (366)
.........++.++++++.+ ++||+.=| +.+.+| .++|||+|.+.
T Consensus 267 --~g~~~~~~~~~~i~~i~~~~~~~ipVi~~GGI~~~~da~~~l~~GAd~V~ig 318 (336)
T 1f76_A 267 --SGRPLQLKSTEIIRRLSLELNGRLPIIGVGGIDSVIAAREKIAAGASLVQIY 318 (336)
T ss_dssp --EEGGGHHHHHHHHHHHHHHHTTSSCEEEESSCCSHHHHHHHHHHTCSEEEES
T ss_pred --CCchhHHHHHHHHHHHHHHhCCCCCEEEECCCCCHHHHHHHHHCCCCEEEee
Confidence 00000123567889999988 79988775 568887 78999999773
|
| >1yad_A Regulatory protein TENI; TIM barrel, transcription; 2.10A {Bacillus subtilis} PDB: 3qh2_A* | Back alignment and structure |
|---|
Probab=87.34 E-value=5.5 Score=34.80 Aligned_cols=40 Identities=25% Similarity=0.340 Sum_probs=33.1
Q ss_pred CCCHHHHHHHHHhcCCCEEEEeccCHHH----HHcCCcEEEEcC
Q 017781 211 SLSWKDVKWLQTITKLPILVKGVLTAED----VQAGAAGIIVSN 250 (366)
Q Consensus 211 ~~~~~~i~~lr~~~~~pv~vK~v~~~~d----~~aGad~I~vs~ 250 (366)
...|+.++++++..++|+++-|..+.++ .++|+|+|.++.
T Consensus 150 ~~~~~~l~~~~~~~~~pvia~GGI~~~nv~~~~~~Ga~gv~vgs 193 (221)
T 1yad_A 150 GRGVSLLSDIKQRISIPVIAIGGMTPDRLRDVKQAGADGIAVMS 193 (221)
T ss_dssp -CHHHHHHHHHHHCCSCEEEESSCCGGGHHHHHHTTCSEEEESH
T ss_pred CCCHHHHHHHHHhCCCCEEEECCCCHHHHHHHHHcCCCEEEEhH
Confidence 4578889999988899999988778776 789999999854
|
| >1o66_A 3-methyl-2-oxobutanoate hydroxymethyltransferase; structural genomics; HET: MSE; 1.75A {Neisseria meningitidis serogroup B} SCOP: c.1.12.8 PDB: 1o68_A* | Back alignment and structure |
|---|
Probab=87.23 E-value=18 Score=33.25 Aligned_cols=33 Identities=21% Similarity=0.199 Sum_probs=25.5
Q ss_pred HHcCCcEEEEcCCCccCCCCCcchHHHHHHHHHHcCCCceEEEec
Q 017781 239 VQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDG 283 (366)
Q Consensus 239 ~~aGad~I~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~i~vi~~G 283 (366)
.++|||+|++-. .+ .+...++.+.+ ++|+|.-|
T Consensus 171 ~eAGA~~ivlE~---------vp-~~~a~~it~~l--~iP~igIG 203 (275)
T 1o66_A 171 DDAGAAVVLMEC---------VL-AELAKKVTETV--SCPTIGIG 203 (275)
T ss_dssp HHTTCSEEEEES---------CC-HHHHHHHHHHC--SSCEEEES
T ss_pred HHcCCcEEEEec---------CC-HHHHHHHHHhC--CCCEEEEC
Confidence 899999998733 23 36677888888 79999866
|
| >3si9_A DHDPS, dihydrodipicolinate synthase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, TIM barrel; 2.10A {Bartonella henselae} | Back alignment and structure |
|---|
Probab=87.22 E-value=19 Score=33.56 Aligned_cols=176 Identities=15% Similarity=0.147 Sum_probs=95.3
Q ss_pred CceEecccccccccCChhhHHHHHHHHHcCCceec--C---CCCCCCHHHHhc-------c-CC-CceEEEeeecCCHHH
Q 017781 72 MPIMIAPTAMQKMAHPEGEYATARAASAAGTIMTL--S---SWSTSSVEEVAS-------T-GP-GIRFFQLYVYKDRNV 137 (366)
Q Consensus 72 ~Pi~iApm~~~~l~~~~~e~~la~aa~~~G~~~~v--s---~~~~~~~e~i~~-------~-~~-~~~~~Qly~~~d~~~ 137 (366)
.|.++.|+.-.+-...++-..+++-.-+.|+...+ + +..+.+.+|..+ . .+ .|.+...- ..+...
T Consensus 27 ~~alvTPf~~dg~iD~~~l~~li~~li~~Gv~Gl~v~GtTGE~~~Ls~~Er~~v~~~~v~~~~grvpViaGvg-~~st~~ 105 (315)
T 3si9_A 27 VTALITPFDDNGAIDEKAFCNFVEWQITQGINGVSPVGTTGESPTLTHEEHKRIIELCVEQVAKRVPVVAGAG-SNSTSE 105 (315)
T ss_dssp EEECCCCBCTTSCBCHHHHHHHHHHHHHTTCSEEECSSTTTTGGGSCHHHHHHHHHHHHHHHTTSSCBEEECC-CSSHHH
T ss_pred eEeeECCCCCCCCcCHHHHHHHHHHHHHcCCCEEEeCccccCccccCHHHHHHHHHHHHHHhCCCCcEEEeCC-CCCHHH
Confidence 34556666422222233334666677778876543 2 234556665432 1 22 35666654 346666
Q ss_pred HHHHHHHHHHcCCCEEEEecCCCCCcchhHHHhhhcCCCCccccccccccccCCCccccchhhHHHhhhccCCCCCHHHH
Q 017781 138 VAQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLTLKNFQGLDLGKMDEANDSGLAAYVAGQIDRSLSWKDV 217 (366)
Q Consensus 138 ~~~~l~ra~~~G~~ai~vtvd~p~~g~r~~d~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~i 217 (366)
..++.+.++++|++++.+. +|... + | ...-..+..
T Consensus 106 ai~la~~A~~~Gadavlv~--~P~y~-~----------~--------------------------------~~~~l~~~f 140 (315)
T 3si9_A 106 AVELAKHAEKAGADAVLVV--TPYYN-R----------P--------------------------------NQRGLYTHF 140 (315)
T ss_dssp HHHHHHHHHHTTCSEEEEE--CCCSS-C----------C--------------------------------CHHHHHHHH
T ss_pred HHHHHHHHHhcCCCEEEEC--CCCCC-C----------C--------------------------------CHHHHHHHH
Confidence 7788899999999998873 23210 0 0 000012334
Q ss_pred HHHHHhcCCCEEEEec-------cCHHH----HH-c-CCcEEEEcCCCccCCCCCcchHHHHHHHHHHcCCCceEEEecC
Q 017781 218 KWLQTITKLPILVKGV-------LTAED----VQ-A-GAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGG 284 (366)
Q Consensus 218 ~~lr~~~~~pv~vK~v-------~~~~d----~~-a-Gad~I~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~i~vi~~GG 284 (366)
+.+-+.+++||++=.+ .+++. .+ . .+-+|.-+. ..+..+.++.+..++++.| .+|.
T Consensus 141 ~~va~a~~lPiilYn~P~~tg~~l~~~~~~~La~~~pnIvgiKdss----------gd~~~~~~l~~~~~~~f~v-~~G~ 209 (315)
T 3si9_A 141 SSIAKAISIPIIIYNIPSRSVIDMAVETMRDLCRDFKNIIGVKDAT----------GKIERASEQREKCGKDFVQ-LSGD 209 (315)
T ss_dssp HHHHHHCSSCEEEEECHHHHSCCCCHHHHHHHHHHCTTEEEEEECS----------CCTHHHHHHHHHHCSSSEE-EESC
T ss_pred HHHHHcCCCCEEEEeCchhhCCCCCHHHHHHHHhhCCCEEEEEeCC----------CCHHHHHHHHHHcCCCeEE-EecC
Confidence 5555666778777754 23333 22 1 222332221 1233445555555556666 4453
Q ss_pred CCCHHHHHHHHHhCcCEEEecHH
Q 017781 285 VRRGTDVFKALALGASGIFIGRP 307 (366)
Q Consensus 285 I~~~~dv~kalalGAd~V~igr~ 307 (366)
..-++.++++||+++.-+..
T Consensus 210 ---d~~~l~~l~~G~~G~is~~a 229 (315)
T 3si9_A 210 ---DCTALGFNAHGGVGCISVSS 229 (315)
T ss_dssp ---GGGHHHHHHTTCCEEEESGG
T ss_pred ---HHHHHHHHHcCCCEEEecHH
Confidence 34567889999999997764
|
| >3i65_A Dihydroorotate dehydrogenase homolog, mitochondrial; triazolopyrimidine,inhibitor, DSM1, FAD, flavoprotein, membrane, mitochondrion; HET: JZ8 FMN ORO LDA; 2.00A {Plasmodium falciparum 3D7} PDB: 3i68_A* 3i6r_A* 3o8a_A* 3sfk_A* | Back alignment and structure |
|---|
Probab=87.19 E-value=1.2 Score=43.65 Aligned_cols=99 Identities=21% Similarity=0.317 Sum_probs=62.3
Q ss_pred Cc-eEEEeeecCCHHHHHHHHHHHHHcCCCEEEEecCCCCCcchhHHHhhhcCCCCccccccccccccCCCccccchhhH
Q 017781 123 GI-RFFQLYVYKDRNVVAQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLTLKNFQGLDLGKMDEANDSGLA 201 (366)
Q Consensus 123 ~~-~~~Qly~~~d~~~~~~~l~ra~~~G~~ai~vtvd~p~~g~r~~d~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~ 201 (366)
.| .++.|-+..+.+.+.++++.++++|+++|+++--+. .|. |+.. + .+ ... +
T Consensus 269 ~P~V~VKi~pd~~~~~i~~iA~~a~~aGaDgIiv~Ntt~---~r~-dl~~-~--------~~----------~~G--G-- 321 (415)
T 3i65_A 269 KPLVFVKLAPDLNQEQKKEIADVLLETNIDGMIISNTTT---QIN-DIKS-F--------EN----------KKG--G-- 321 (415)
T ss_dssp CCEEEEEECSCCCHHHHHHHHHHHHHHTCSEEEECCCBS---CCC-CCGG-G--------TT----------CCS--E--
T ss_pred CCeEEEEecCCCCHHHHHHHHHHHHHcCCcEEEEeCCCc---ccc-cccc-c--------cc----------ccC--C--
Confidence 46 688887767777788999999999999998752111 110 0000 0 00 000 0
Q ss_pred HHhhhccCCCCCHHHHHHHHHhc--CCCEEEE-eccCHHH----HHcCCcEEEEcC
Q 017781 202 AYVAGQIDRSLSWKDVKWLQTIT--KLPILVK-GVLTAED----VQAGAAGIIVSN 250 (366)
Q Consensus 202 ~~~~~~~d~~~~~~~i~~lr~~~--~~pv~vK-~v~~~~d----~~aGad~I~vs~ 250 (366)
++.....+.+++.|+++++.+ ++|||.= ++.+.+| ..+|||+|.+..
T Consensus 322 --lSG~a~~p~al~~I~~v~~~v~~~iPIIg~GGI~s~eDa~e~l~aGAd~VqIgr 375 (415)
T 3i65_A 322 --VSGAKLKDISTKFICEMYNYTNKQIPIIASGGIFSGLDALEKIEAGASVCQLYS 375 (415)
T ss_dssp --EEEGGGHHHHHHHHHHHHHHTTTCSCEEECSSCCSHHHHHHHHHHTEEEEEESH
T ss_pred --cCCccchHHHHHHHHHHHHHhCCCCCEEEECCCCCHHHHHHHHHcCCCEEEEcH
Confidence 000001123568899999988 6898776 4578888 889999998743
|
| >3tcs_A Racemase, putative; PSI-biology, nysgrc, structural genomics, NEW YORK structura genomics research consortium, TIM barrel; HET: PG4; 1.88A {Roseobacter denitrificans} PDB: 3u4f_A 3t9p_A 3t8q_A | Back alignment and structure |
|---|
Probab=87.10 E-value=8.6 Score=37.04 Aligned_cols=85 Identities=8% Similarity=-0.047 Sum_probs=62.6
Q ss_pred CHHHHHHHHHhc--CCCEEEEec--cCHHH--------HHcCCcEEEEcCCCccCCCCCcchHHHHHHHHHHcCCCceEE
Q 017781 213 SWKDVKWLQTIT--KLPILVKGV--LTAED--------VQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVF 280 (366)
Q Consensus 213 ~~~~i~~lr~~~--~~pv~vK~v--~~~~d--------~~aGad~I~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~i~vi 280 (366)
..+.++.+|+.+ +.++.+..- .+.++ .+.|+++|- +. ..+..++.+.++++.+ .+||.
T Consensus 185 ~~~~v~avReavG~d~~l~vDaN~~~~~~~A~~~~~~l~~~~i~~iE-------eP-~~~~d~~~~~~l~~~~--~iPIa 254 (388)
T 3tcs_A 185 TEEIIPTMRRELGDDVDLLIDANSCYTPDRAIEVGHMLQDHGFCHFE-------EP-CPYWELAQTKQVTDAL--DIDVT 254 (388)
T ss_dssp HHHHHHHHHHHHCSSSEEEEECTTCCCHHHHHHHHHHHHHTTCCEEE-------CC-SCTTCHHHHHHHHHHC--SSCEE
T ss_pred HHHHHHHHHHHhCCCCeEEEeCCCCcCHHHHHHHHHHHhhcCCeEEE-------CC-CCccCHHHHHHHHHhc--CCCEE
Confidence 345688888887 567888743 35444 566777763 11 1223577888888887 79999
Q ss_pred EecCCCCHHHHHHHHHhC-cCEEEecHH
Q 017781 281 LDGGVRRGTDVFKALALG-ASGIFIGRP 307 (366)
Q Consensus 281 ~~GGI~~~~dv~kalalG-Ad~V~igr~ 307 (366)
++.-+.+..|+.+++..| +|.|++--.
T Consensus 255 ~dE~~~~~~~~~~~i~~~a~d~v~~d~~ 282 (388)
T 3tcs_A 255 GGEQDCDLPTWQRMIDMRAVDIVQPDIL 282 (388)
T ss_dssp ECTTCCCHHHHHHHHHHTCCSEECCCHH
T ss_pred cCCccCCHHHHHHHHHcCCCCEEEeCcc
Confidence 999999999999999987 799988743
|
| >2nuw_A 2-keto-3-deoxygluconate/2-keto-3-deoxy-6-phospho aldolase; TIM barrel, lyase; 1.80A {Sulfolobus acidocaldarius dsm 639} PDB: 2nux_A 2nuy_A | Back alignment and structure |
|---|
Probab=86.97 E-value=0.98 Score=41.89 Aligned_cols=99 Identities=16% Similarity=0.179 Sum_probs=55.3
Q ss_pred CCCCHHHHHHHHHhcCCCEEEEeccCHHHHHcCCcEEEEcCCCccCCCCCcc-hHHHHHHHHHHcCCCceEEEecCCCCH
Q 017781 210 RSLSWKDVKWLQTITKLPILVKGVLTAEDVQAGAAGIIVSNHGARQLDYVPA-TIMALEEVVKATQGRIPVFLDGGVRRG 288 (366)
Q Consensus 210 ~~~~~~~i~~lr~~~~~pv~vK~v~~~~d~~aGad~I~vs~~gg~~~~~~~~-~~~~l~~i~~~~~~~i~vi~~GGI~~~ 288 (366)
...+++.++++.+.. .+.|+|+|++.++.|....-... ..+.+..+++.+.+ -|...|+. +-
T Consensus 15 g~iD~~~l~~lv~~l--------------i~~Gv~gl~v~GtTGE~~~Ls~eEr~~v~~~~~~~~~g--ViaGvg~~-~t 77 (288)
T 2nuw_A 15 GKVNVDALKTHAKNL--------------LEKGIDAIFVNGTTGLGPALSKDEKRQNLNALYDVTHK--LIFQVGSL-NL 77 (288)
T ss_dssp SCBCHHHHHHHHHHH--------------HHTTCCEEEETSTTTTGGGSCHHHHHHHHHHHTTTCSC--EEEECCCS-CH
T ss_pred CCcCHHHHHHHHHHH--------------HHcCCCEEEECccccChhhCCHHHHHHHHHHHHHHhCC--eEEeeCCC-CH
Confidence 455666665555432 56799999998876632211111 12334444444433 23344444 44
Q ss_pred HHHHH----HHHhCcCEEEecHHHHHH-hhhcCHHHHHHHHHHHH
Q 017781 289 TDVFK----ALALGASGIFIGRPVVYS-LAAEGEKGVRRVLEMLR 328 (366)
Q Consensus 289 ~dv~k----alalGAd~V~igr~~l~~-l~~~G~~gv~~~~~~l~ 328 (366)
.++++ |-.+|||++++-.|+++. . .++++.++++.+.
T Consensus 78 ~~ai~la~~A~~~Gadavlv~~P~y~~~~---s~~~l~~~f~~va 119 (288)
T 2nuw_A 78 NDVMELVKFSNEMDILGVSSHSPYYFPRL---PEKFLAKYYEEIA 119 (288)
T ss_dssp HHHHHHHHHHHTSCCSEEEECCCCSSCSC---CHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCCCEEEEcCCcCCCCC---CHHHHHHHHHHHH
Confidence 44442 233799999999998764 2 4566655555544
|
| >3dgb_A Muconate cycloisomerase; muconate lactonizing enzyme, muconolactone binding, isomeras structural genomics, PSI-2; HET: MUC; 1.70A {Pseudomonas fluorescens} PDB: 3ct2_A* 3fj4_A* 1muc_A 1bkh_A 3muc_A 2muc_A 1f9c_A | Back alignment and structure |
|---|
Probab=86.91 E-value=5.5 Score=38.24 Aligned_cols=84 Identities=14% Similarity=0.069 Sum_probs=57.1
Q ss_pred HHHHHHHHHhc--CCCEEEEec--cCHHH--------HHcCCcEEEEcCCCccCCCCCcchHHHHHHHHHHcCCCceEEE
Q 017781 214 WKDVKWLQTIT--KLPILVKGV--LTAED--------VQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFL 281 (366)
Q Consensus 214 ~~~i~~lr~~~--~~pv~vK~v--~~~~d--------~~aGad~I~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~i~vi~ 281 (366)
.+.++.+|+.+ +.++.+..- .+.++ .+.|+.+|- + ...+..++.+.++++.. .+||++
T Consensus 181 ~~~v~avR~a~g~~~~l~vDaN~~~~~~~A~~~~~~l~~~~i~~iE-------q-P~~~~d~~~~~~l~~~~--~ipIa~ 250 (382)
T 3dgb_A 181 LAHVIAIKKALGDSASVRVDVNQAWDEAVALRACRILGGNGIDLIE-------Q-PISRNNRAGMVRLNASS--PAPIMA 250 (382)
T ss_dssp HHHHHHHHHHHGGGSEEEEECTTCBCHHHHHHHHHHHHTTTCCCEE-------C-CBCTTCHHHHHHHHHHC--SSCEEE
T ss_pred HHHHHHHHHHcCCCCeEEEeCCCCCCHHHHHHHHHHHhhcCcCeee-------C-CCCccCHHHHHHHHHhC--CCCEEe
Confidence 44566666665 355666532 23333 345555553 1 11233577888888877 799999
Q ss_pred ecCCCCHHHHHHHHHhC-cCEEEecHH
Q 017781 282 DGGVRRGTDVFKALALG-ASGIFIGRP 307 (366)
Q Consensus 282 ~GGI~~~~dv~kalalG-Ad~V~igr~ 307 (366)
+.-+.+..|+.+++..| +|.|++--.
T Consensus 251 dE~~~~~~~~~~~~~~~~~d~v~~k~~ 277 (382)
T 3dgb_A 251 DESIECVEDAFNLAREGAASVFALKIA 277 (382)
T ss_dssp STTCSSHHHHHHHHHHTCCSEEEECHH
T ss_pred CCCcCCHHHHHHHHHcCCCCEEEeccc
Confidence 99999999999999987 799998743
|
| >3hjz_A Transaldolase B; parachlorococcus, marine, cyanobacteria; HET: MSE; 1.90A {Prochlorococcus marinus str} | Back alignment and structure |
|---|
Probab=86.85 E-value=6.8 Score=37.11 Aligned_cols=96 Identities=14% Similarity=0.159 Sum_probs=61.6
Q ss_pred CHHHHHHHHHh--cCCCEEEEeccCHHH----HHcCCcEEEEcCCCccCCCC-----C--------cchHHHHHHHHHH-
Q 017781 213 SWKDVKWLQTI--TKLPILVKGVLTAED----VQAGAAGIIVSNHGARQLDY-----V--------PATIMALEEVVKA- 272 (366)
Q Consensus 213 ~~~~i~~lr~~--~~~pv~vK~v~~~~d----~~aGad~I~vs~~gg~~~~~-----~--------~~~~~~l~~i~~~- 272 (366)
+|+-++.++.. -++++-+-.+.+... .++|+..|.. .-||-.|| + -+.+..+.++.+.
T Consensus 140 T~eGl~A~~~L~~~GI~~N~TliFS~~Qa~~aa~AGa~~ISP--FVgRi~D~~~~~~g~~~~~~~~d~Gv~~v~~i~~~y 217 (334)
T 3hjz_A 140 TWEGIKAAEILEKEGIKCNLTLLFNFCQAVTCANANITLISP--FVGRILDWHKAKTGKTSFIGAEDPGVISVTQIYKYF 217 (334)
T ss_dssp SHHHHHHHHHHHHTTCCEEEESCCSHHHHHHHHHTTCSEECC--BHHHHHHHHHHHHCCCCCCGGGCHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHCCCcEEEEEeCCHHHHHHHHHcCCcEEEe--eccHHHHHhhhccCCcccccccCcHHHHHHHHHHHH
Confidence 56544444432 289999999999887 8999987743 22332111 1 1234445555443
Q ss_pred --cCCCceEEEecCCCCHHHHHHHHHhCcCEEEecHHHHHHhh
Q 017781 273 --TQGRIPVFLDGGVRRGTDVFKALALGASGIFIGRPVVYSLA 313 (366)
Q Consensus 273 --~~~~i~vi~~GGI~~~~dv~kalalGAd~V~igr~~l~~l~ 313 (366)
.+.+..|++. .+|+..+|.. .+|+|.+-|.-.++..+.
T Consensus 218 ~~~g~~T~vl~A-SfRn~~~v~~--laG~d~~Tipp~ll~~L~ 257 (334)
T 3hjz_A 218 KEKGFKTEVMGA-SFRNLDEIKE--LAGCDLLTIAPKFLEELK 257 (334)
T ss_dssp HHHTCCCEEEEB-CCSSHHHHHH--TTTCSEEEECHHHHHHHH
T ss_pred HHcCCCCEEEEe-cCCCHHHHHH--HhCCCEEEcCHHHHHHHH
Confidence 3335556655 5999999997 469999999988877653
|
| >4e4f_A Mannonate dehydratase; magnesium binding, enzyme function initiative, isomerase; 2.00A {Pectobacterium carotovorum subsp} | Back alignment and structure |
|---|
Probab=86.84 E-value=1.9 Score=42.26 Aligned_cols=83 Identities=10% Similarity=-0.131 Sum_probs=61.8
Q ss_pred HHHHHHHHHhc--CCCEEEEec--cCHHH--------HHcCCcEEEEcCCCccCCCCCcchHHHHHHHHHHcCCCceEEE
Q 017781 214 WKDVKWLQTIT--KLPILVKGV--LTAED--------VQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFL 281 (366)
Q Consensus 214 ~~~i~~lr~~~--~~pv~vK~v--~~~~d--------~~aGad~I~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~i~vi~ 281 (366)
.+.++.+|+.+ +.+|.+..- .+.++ .+.|+++|-- ...+..++.+.++++.+ .+||++
T Consensus 215 ~e~v~avR~a~G~d~~L~vDaN~~~~~~~A~~~~~~L~~~~i~~iEe--------P~~~~d~~~~~~l~~~~--~iPIa~ 284 (426)
T 4e4f_A 215 PKLFEAVRDKFGFNEHLLHDMHHRLTPIEAARFGKSVEDYRLFWMED--------PTPAENQACFRLIRQHT--VTPIAV 284 (426)
T ss_dssp HHHHHHHHHHHTTSSEEEEECTTCSCHHHHHHHHHHTGGGCCSEEEC--------CSCCSSGGGGHHHHTTC--CSCEEE
T ss_pred HHHHHHHHHHhCCCCEEEEECCCCCCHHHHHHHHHHHhhcCCCEEEC--------CCChHHHHHHHHHHhcC--CCCEEe
Confidence 46789999988 588888843 45554 6678887741 01122455667777766 799999
Q ss_pred ecCCCCHHHHHHHHHhC-cCEEEecH
Q 017781 282 DGGVRRGTDVFKALALG-ASGIFIGR 306 (366)
Q Consensus 282 ~GGI~~~~dv~kalalG-Ad~V~igr 306 (366)
+.-+.+..|+.+++..| +|.|++--
T Consensus 285 dE~~~~~~~~~~~i~~ga~d~v~~k~ 310 (426)
T 4e4f_A 285 GEVFNSIWDCKQLIEEQLIDYIRTTI 310 (426)
T ss_dssp CTTCCSGGGTHHHHHTTCCSEECCCT
T ss_pred CCCcCCHHHHHHHHHcCCCCEEEeCc
Confidence 99999999999999988 79998753
|
| >2rfg_A Dihydrodipicolinate synthase; beta barrel, amino-acid biosynthesis, diaminopimelate biosyn lyase, lysine biosynthesis, schiff base; 1.50A {Hahella chejuensis} | Back alignment and structure |
|---|
Probab=86.81 E-value=19 Score=33.17 Aligned_cols=82 Identities=13% Similarity=0.014 Sum_probs=48.4
Q ss_pred ceEecccccccccCChhhHHHHHHHHHcCCceec--C---CCCCCCHHHHhc-------c-CC-CceEEEeeecCCHHHH
Q 017781 73 PIMIAPTAMQKMAHPEGEYATARAASAAGTIMTL--S---SWSTSSVEEVAS-------T-GP-GIRFFQLYVYKDRNVV 138 (366)
Q Consensus 73 Pi~iApm~~~~l~~~~~e~~la~aa~~~G~~~~v--s---~~~~~~~e~i~~-------~-~~-~~~~~Qly~~~d~~~~ 138 (366)
|.++.|+ -.+-...++-..+++-.-+.|+...+ + +..+.+.+|-.+ . .. .|.+...- ..+.+..
T Consensus 7 ~a~vTPf-~dg~iD~~~l~~lv~~li~~Gv~gi~v~GttGE~~~Ls~~Er~~v~~~~~~~~~grvpviaGvg-~~~t~~a 84 (297)
T 2rfg_A 7 IAMITPF-INGQVDEKALAGLVDWQIKHGAHGLVPVGTTGESPTLTEEEHKRVVALVAEQAQGRVPVIAGAG-SNNPVEA 84 (297)
T ss_dssp EECCCCE-ETTEECHHHHHHHHHHHHHTTCSEEECSSGGGTGGGSCHHHHHHHHHHHHHHHTTSSCBEEECC-CSSHHHH
T ss_pred EeeecCc-CCCCcCHHHHHHHHHHHHHcCCCEEEECccccchhhCCHHHHHHHHHHHHHHhCCCCeEEEccC-CCCHHHH
Confidence 3445555 22223333345666767778876543 3 344566665432 1 22 35666654 3455667
Q ss_pred HHHHHHHHHcCCCEEEEe
Q 017781 139 AQLVRRAERAGFKAIALT 156 (366)
Q Consensus 139 ~~~l~ra~~~G~~ai~vt 156 (366)
.++.+.++++|++++.+.
T Consensus 85 i~la~~A~~~Gadavlv~ 102 (297)
T 2rfg_A 85 VRYAQHAQQAGADAVLCV 102 (297)
T ss_dssp HHHHHHHHHHTCSEEEEC
T ss_pred HHHHHHHHhcCCCEEEEc
Confidence 788899999999998873
|
| >1w3i_A EDA, 2-keto-3-deoxy gluconate aldolase; archaeal metabolism, pyruvate; 1.7A {Sulfolobus solfataricus} SCOP: c.1.10.1 PDB: 1w37_A 1w3n_A* 1w3t_A* 2yda_A* | Back alignment and structure |
|---|
Probab=86.75 E-value=1.4 Score=40.94 Aligned_cols=99 Identities=18% Similarity=0.261 Sum_probs=56.0
Q ss_pred CCCCHHHHHHHHHhcCCCEEEEeccCHHHHHcCCcEEEEcCCCccCCCCCcc-hHHHHHHHHHHcCCCceEEEecCCCCH
Q 017781 210 RSLSWKDVKWLQTITKLPILVKGVLTAEDVQAGAAGIIVSNHGARQLDYVPA-TIMALEEVVKATQGRIPVFLDGGVRRG 288 (366)
Q Consensus 210 ~~~~~~~i~~lr~~~~~pv~vK~v~~~~d~~aGad~I~vs~~gg~~~~~~~~-~~~~l~~i~~~~~~~i~vi~~GGI~~~ 288 (366)
...+++.++++.+.. .+.|+|+|++.++.|....-... ..+++..+++.+.+ -|...|+. +-
T Consensus 15 g~iD~~~l~~lv~~l--------------i~~Gv~gl~~~GttGE~~~Ls~eEr~~v~~~~~~~~~g--viaGvg~~-~t 77 (293)
T 1w3i_A 15 NRIDKEKLKIHAENL--------------IRKGIDKLFVNGTTGLGPSLSPEEKLENLKAVYDVTNK--IIFQVGGL-NL 77 (293)
T ss_dssp SSBCHHHHHHHHHHH--------------HHTTCCEEEESSTTTTGGGSCHHHHHHHHHHHHTTCSC--EEEECCCS-CH
T ss_pred CCcCHHHHHHHHHHH--------------HHcCCCEEEECccccChhhCCHHHHHHHHHHHHHHcCC--EEEecCCC-CH
Confidence 455666665554432 56799999998876632211111 22344444444443 33444444 44
Q ss_pred HHHHHHH----HhCcCEEEecHHHHHH-hhhcCHHHHHHHHHHHH
Q 017781 289 TDVFKAL----ALGASGIFIGRPVVYS-LAAEGEKGVRRVLEMLR 328 (366)
Q Consensus 289 ~dv~kal----alGAd~V~igr~~l~~-l~~~G~~gv~~~~~~l~ 328 (366)
.++++.. .+|||++++-.|+++. . .++++.++++.+.
T Consensus 78 ~~ai~la~~A~~~Gadavlv~~P~y~~~~---s~~~l~~~f~~va 119 (293)
T 1w3i_A 78 DDAIRLAKLSKDFDIVGIASYAPYYYPRM---SEKHLVKYFKTLC 119 (293)
T ss_dssp HHHHHHHHHGGGSCCSEEEEECCCSCSSC---CHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCCCEEEEcCCCCCCCC---CHHHHHHHHHHHH
Confidence 4444322 3799999999998764 2 4566655555443
|
| >2fli_A Ribulose-phosphate 3-epimerase; (beta/alpha)8-barrel, D- xylitol 5-phosphate, isomerase; HET: DX5; 1.80A {Streptococcus pyogenes} SCOP: c.1.2.2 | Back alignment and structure |
|---|
Probab=86.69 E-value=4.2 Score=35.34 Aligned_cols=83 Identities=14% Similarity=0.065 Sum_probs=54.2
Q ss_pred CHHHHHHHHHhcCCCEEEEecc-CHH----H-HHcCCcEEEEcCCCccCCCCCcchHHHHHHHHHHcCCCceEEEecCCC
Q 017781 213 SWKDVKWLQTITKLPILVKGVL-TAE----D-VQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVR 286 (366)
Q Consensus 213 ~~~~i~~lr~~~~~pv~vK~v~-~~~----d-~~aGad~I~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~i~vi~~GGI~ 286 (366)
..+.++++++.++.|+.+-+.. +.+ . .++|+|+|+++...+ ......+..+.+ . ...++.+=...
T Consensus 49 g~~~i~~i~~~~~~~~~v~l~v~d~~~~i~~~~~~gad~v~vh~~~~------~~~~~~~~~~~~-~--g~~i~~~~~~~ 119 (220)
T 2fli_A 49 GADVVASMRKHSKLVFDCHLMVVDPERYVEAFAQAGADIMTIHTEST------RHIHGALQKIKA-A--GMKAGVVINPG 119 (220)
T ss_dssp CHHHHHHHHTTCCSEEEEEEESSSGGGGHHHHHHHTCSEEEEEGGGC------SCHHHHHHHHHH-T--TSEEEEEECTT
T ss_pred CHHHHHHHHHhCCCCEEEEEeecCHHHHHHHHHHcCCCEEEEccCcc------ccHHHHHHHHHH-c--CCcEEEEEcCC
Confidence 4678999999888788777553 322 2 899999999865322 112233444433 2 34555554456
Q ss_pred CHHHHHHHHHhCcCEEEe
Q 017781 287 RGTDVFKALALGASGIFI 304 (366)
Q Consensus 287 ~~~dv~kalalGAd~V~i 304 (366)
+..+.++++..++|.|.+
T Consensus 120 t~~e~~~~~~~~~d~vl~ 137 (220)
T 2fli_A 120 TPATALEPLLDLVDQVLI 137 (220)
T ss_dssp SCGGGGGGGTTTCSEEEE
T ss_pred CCHHHHHHHHhhCCEEEE
Confidence 777888888888998865
|
| >4ef8_A Dihydroorotate dehydrogenase; phenyl isothiocyanate, PYRD, oxidoreductase, oxidoreductase-oxidor inhibitor complex; HET: FMN; 1.56A {Leishmania major} PDB: 3gye_A* 3gz3_A* 4ef9_A* 3tro_A* 3tjx_A* | Back alignment and structure |
|---|
Probab=86.68 E-value=1.2 Score=42.70 Aligned_cols=109 Identities=20% Similarity=0.151 Sum_probs=62.1
Q ss_pred cCCCceEEEeeecCCHHHHHHHHHHHHHcC-CCEEEEecCCCCCcchhHHHh-hhcCCCCccccccccccccCCCccccc
Q 017781 120 TGPGIRFFQLYVYKDRNVVAQLVRRAERAG-FKAIALTVDTPRLGRREADIK-NRFTLPPFLTLKNFQGLDLGKMDEAND 197 (366)
Q Consensus 120 ~~~~~~~~Qly~~~d~~~~~~~l~ra~~~G-~~ai~vtvd~p~~g~r~~d~~-~~~~~p~~~~~~~~~~~~~~~~~~~~~ 197 (366)
....|.++.+-+..|.+.+.+.++.++++| +++|.++ |+-..|-.. |+. ....+..+ ....++
T Consensus 191 ~~~~PV~vKi~p~~d~~~~~~~a~~~~~~Gg~d~I~~~-NT~~~g~~i-di~~~~~~~~~~---~~~gGl---------- 255 (354)
T 4ef8_A 191 VYPHSFGVKMPPYFDFAHFDAAAEILNEFPKVQFITCI-NSIGNGLVI-DAETESVVIKPK---QGFGGL---------- 255 (354)
T ss_dssp HCCSCEEEEECCCCSHHHHHHHHHHHHTCTTEEEEEEC-CCEEEEECE-ETTTTEESCSGG---GGEEEE----------
T ss_pred hhCCCeEEEecCCCCHHHHHHHHHHHHhCCCccEEEEe-cccCcceee-eccCCccccccc---cccCCC----------
Confidence 344688999887777777777788888887 9988753 210000000 000 00000000 000000
Q ss_pred hhhHHHhhhccCCCCCHHHHHHHHHhc-CCCEEEE-eccCHHH----HHcCCcEEEEcC
Q 017781 198 SGLAAYVAGQIDRSLSWKDVKWLQTIT-KLPILVK-GVLTAED----VQAGAAGIIVSN 250 (366)
Q Consensus 198 ~~~~~~~~~~~d~~~~~~~i~~lr~~~-~~pv~vK-~v~~~~d----~~aGad~I~vs~ 250 (366)
++ . .-.+..|+.|.++++.. ++||+.= ++.+.+| ..+|||+|.+..
T Consensus 256 SG--~-----~i~p~a~~~i~~v~~~~~~ipII~~GGI~s~~da~~~l~aGAd~V~vgr 307 (354)
T 4ef8_A 256 GG--R-----YVLPTALANINAFYRRCPGKLIFGCGGVYTGEDAFLHVLAGASMVQVGT 307 (354)
T ss_dssp EG--G-----GGHHHHHHHHHHHHHHCTTSEEEEESCCCSHHHHHHHHHHTEEEEEECH
T ss_pred CC--C-----CCchHHHHHHHHHHHhCCCCCEEEECCcCCHHHHHHHHHcCCCEEEEhH
Confidence 00 0 01134788999999986 6898866 4678888 789999998743
|
| >2z6i_A Trans-2-enoyl-ACP reductase II; fatty acid synthesis, antibiotics, oxidoreductase, flavoprotein; HET: FMN; 1.70A {Streptococcus pneumoniae} PDB: 2z6j_A* | Back alignment and structure |
|---|
Probab=86.64 E-value=4.8 Score=37.85 Aligned_cols=107 Identities=17% Similarity=0.199 Sum_probs=66.4
Q ss_pred HHHHHHHHHcCCceecCCCCCCC---HHHHhccCCCceEEEeeecCCHHHHHHHHHHHHHcCCCEEEEecCCCCCcchhH
Q 017781 91 YATARAASAAGTIMTLSSWSTSS---VEEVASTGPGIRFFQLYVYKDRNVVAQLVRRAERAGFKAIALTVDTPRLGRREA 167 (366)
Q Consensus 91 ~~la~aa~~~G~~~~vs~~~~~~---~e~i~~~~~~~~~~Qly~~~d~~~~~~~l~ra~~~G~~ai~vtvd~p~~g~r~~ 167 (366)
...++.+.+.|+.++..... .+ ++.+.+ ...+.++.+. + .+.++++++.|+++++++ .+..|.
T Consensus 78 ~~~~~~a~~~g~d~V~~~~g-~p~~~i~~l~~-~g~~v~~~v~---~----~~~a~~~~~~GaD~i~v~--g~~~GG--- 143 (332)
T 2z6i_A 78 EDIVDLVIEEGVKVVTTGAG-NPSKYMERFHE-AGIIVIPVVP---S----VALAKRMEKIGADAVIAE--GMEAGG--- 143 (332)
T ss_dssp HHHHHHHHHTTCSEEEECSS-CGGGTHHHHHH-TTCEEEEEES---S----HHHHHHHHHTTCSCEEEE--CTTSSE---
T ss_pred HHHHHHHHHCCCCEEEECCC-ChHHHHHHHHH-cCCeEEEEeC---C----HHHHHHHHHcCCCEEEEE--CCCCCC---
Confidence 35777888889887753332 22 233333 2234454442 2 234567788899998873 110000
Q ss_pred HHhhhcCCCCccccccccccccCCCccccchhhHHHhhhccCCCCCHHHHHHHHHhcCCCEEEEecc-CHHH----HHcC
Q 017781 168 DIKNRFTLPPFLTLKNFQGLDLGKMDEANDSGLAAYVAGQIDRSLSWKDVKWLQTITKLPILVKGVL-TAED----VQAG 242 (366)
Q Consensus 168 d~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~i~~lr~~~~~pv~vK~v~-~~~d----~~aG 242 (366)
+ .....+|+.++++++.+++||++-|.. +.++ ..+|
T Consensus 144 -----------------------------------~----~g~~~~~~ll~~i~~~~~iPViaaGGI~~~~~~~~al~~G 184 (332)
T 2z6i_A 144 -----------------------------------H----IGKLTTMTLVRQVATAISIPVIAAGGIADGEGAAAGFMLG 184 (332)
T ss_dssp -----------------------------------E----CCSSCHHHHHHHHHHHCSSCEEEESSCCSHHHHHHHHHTT
T ss_pred -----------------------------------C----CCCccHHHHHHHHHHhcCCCEEEECCCCCHHHHHHHHHcC
Confidence 0 001246788999999899999998765 4777 7789
Q ss_pred CcEEEEcC
Q 017781 243 AAGIIVSN 250 (366)
Q Consensus 243 ad~I~vs~ 250 (366)
||+|.++.
T Consensus 185 AdgV~vGs 192 (332)
T 2z6i_A 185 AEAVQVGT 192 (332)
T ss_dssp CSEEEECH
T ss_pred CCEEEecH
Confidence 99999853
|
| >4dye_A Isomerase; enolase family protein, EFI, enzym function initiative; 1.60A {Streptomyces coelicolor} PDB: 2oqh_A | Back alignment and structure |
|---|
Probab=86.47 E-value=6 Score=38.30 Aligned_cols=82 Identities=16% Similarity=0.055 Sum_probs=56.1
Q ss_pred HHHHHHHHHhc-CCCEEEEec--cCHHH--------HHcCCcEEEEcCCCccCCCCCcchHHHHHHHHHHcCCCceEEEe
Q 017781 214 WKDVKWLQTIT-KLPILVKGV--LTAED--------VQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLD 282 (366)
Q Consensus 214 ~~~i~~lr~~~-~~pv~vK~v--~~~~d--------~~aGad~I~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~i~vi~~ 282 (366)
.+.++.+|+.+ +.++.+-.- .+.++ .+.|+++|- +. .+.++.+.++++.. .+||.++
T Consensus 200 ~~~v~avR~~~~~~~l~vDaN~~w~~~~A~~~~~~l~~~~i~~iE-------qP---~~d~~~~~~l~~~~--~iPIa~d 267 (398)
T 4dye_A 200 VAILRAVREALPGVNLRVDPNAAWSVPDSVRAGIALEELDLEYLE-------DP---CVGIEGMAQVKAKV--RIPLCTN 267 (398)
T ss_dssp HHHHHHHHHHCTTSEEEEECTTCSCHHHHHHHHHHHGGGCCSEEE-------CC---SSHHHHHHHHHHHC--CSCEEES
T ss_pred HHHHHHHHHhCCCCeEEeeCCCCCCHHHHHHHHHHHhhcCCCEEc-------CC---CCCHHHHHHHHhhC--CCCEEeC
Confidence 34556666655 345555422 23333 455666663 11 12677888888877 7999999
Q ss_pred cCCCCHHHHHHHHHhC-cCEEEecHH
Q 017781 283 GGVRRGTDVFKALALG-ASGIFIGRP 307 (366)
Q Consensus 283 GGI~~~~dv~kalalG-Ad~V~igr~ 307 (366)
.-+.+..|+.+++..| +|.|++--.
T Consensus 268 E~~~~~~~~~~~i~~~a~d~v~~k~~ 293 (398)
T 4dye_A 268 MCVVRFEDFAPAMRLNAVDVIHGDVY 293 (398)
T ss_dssp SSCCSGGGHHHHHHTTCCSEEEECHH
T ss_pred CcCCCHHHHHHHHHhCCCCEEEeCcc
Confidence 9999999999999987 899998754
|
| >2gjl_A Hypothetical protein PA1024; 2-nitropropane dioxygenase, 2-nitropropane, FMN, oxidoreduct; HET: FMN; 2.00A {Pseudomonas aeruginosa PAO1} PDB: 2gjn_A* | Back alignment and structure |
|---|
Probab=86.46 E-value=3.6 Score=38.51 Aligned_cols=76 Identities=17% Similarity=0.197 Sum_probs=54.5
Q ss_pred HHHHHHHHhcCCCEEEEeccC-------HHH-----HHcCCcEEEEcCCCccCCCCCcchHHHHHHHHHHcCCCceEEEe
Q 017781 215 KDVKWLQTITKLPILVKGVLT-------AED-----VQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLD 282 (366)
Q Consensus 215 ~~i~~lr~~~~~pv~vK~v~~-------~~d-----~~aGad~I~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~i~vi~~ 282 (366)
+.++++++.++.|+.+-...+ .++ .++|+|+|.++. | .+ .+.+..+++. .++++.+
T Consensus 57 ~~i~~i~~~~~~p~~v~l~v~~~~~~~~~~~~~~~~~~~g~d~V~~~~--g------~p-~~~~~~l~~~---gi~vi~~ 124 (328)
T 2gjl_A 57 AEIARCRELTDRPFGVNLTLLPTQKPVPYAEYRAAIIEAGIRVVETAG--N------DP-GEHIAEFRRH---GVKVIHK 124 (328)
T ss_dssp HHHHHHHHHCSSCCEEEEEECCCSSCCCHHHHHHHHHHTTCCEEEEEE--S------CC-HHHHHHHHHT---TCEEEEE
T ss_pred HHHHHHHHhcCCCeEEEEeccccccCccHHHHHHHHHhcCCCEEEEcC--C------Cc-HHHHHHHHHc---CCCEEee
Confidence 457788887778887776554 122 889999998753 2 12 3445555442 5788854
Q ss_pred cCCCCHHHHHHHHHhCcCEEEe
Q 017781 283 GGVRRGTDVFKALALGASGIFI 304 (366)
Q Consensus 283 GGI~~~~dv~kalalGAd~V~i 304 (366)
+.+..++.++...|||++.+
T Consensus 125 --v~t~~~a~~~~~~GaD~i~v 144 (328)
T 2gjl_A 125 --CTAVRHALKAERLGVDAVSI 144 (328)
T ss_dssp --ESSHHHHHHHHHTTCSEEEE
T ss_pred --CCCHHHHHHHHHcCCCEEEE
Confidence 88999999999999999998
|
| >2tps_A Protein (thiamin phosphate synthase); thiamin biosynthesis, TIM barrel; HET: TPS; 1.25A {Bacillus subtilis} SCOP: c.1.3.1 PDB: 1g4t_A* 3o15_A* 1g6c_A* 1g4e_A* 1g69_A* 3o16_A 1g4s_A* 1g4p_A* 1g67_A* | Back alignment and structure |
|---|
Probab=86.31 E-value=5.1 Score=34.94 Aligned_cols=40 Identities=23% Similarity=0.327 Sum_probs=33.1
Q ss_pred CCCHHHHHHHHHhcC-CCEEEEeccCHHH----HHcCCcEEEEcC
Q 017781 211 SLSWKDVKWLQTITK-LPILVKGVLTAED----VQAGAAGIIVSN 250 (366)
Q Consensus 211 ~~~~~~i~~lr~~~~-~pv~vK~v~~~~d----~~aGad~I~vs~ 250 (366)
...|+.++++++..+ +|+++-|..++++ .++|+|+|.++.
T Consensus 157 ~~~~~~l~~~~~~~~~~pvia~GGI~~~nv~~~~~~Ga~gv~vgs 201 (227)
T 2tps_A 157 VQGVSLIEAVRRQGISIPIVGIGGITIDNAAPVIQAGADGVSMIS 201 (227)
T ss_dssp CCTTHHHHHHHHTTCCCCEEEESSCCTTTSHHHHHTTCSEEEESH
T ss_pred ccCHHHHHHHHHhCCCCCEEEEcCCCHHHHHHHHHcCCCEEEEhH
Confidence 357889999998887 9999988777665 778999999854
|
| >3dip_A Enolase; structural genomics, isomerase, PSI-2, protein structure initiative, NEW YORK SGX research center for structural genomics, NYSGXRC, lyase; HET: SIC; 2.50A {Unidentified} | Back alignment and structure |
|---|
Probab=86.19 E-value=2.9 Score=40.72 Aligned_cols=84 Identities=10% Similarity=0.099 Sum_probs=63.8
Q ss_pred CHHHHHHHHHhc--CCCEEEEec--cCHHH--------HHcCCcEEEEcCCCccCCCCCcchHHHHHHHHHHcCCCceEE
Q 017781 213 SWKDVKWLQTIT--KLPILVKGV--LTAED--------VQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVF 280 (366)
Q Consensus 213 ~~~~i~~lr~~~--~~pv~vK~v--~~~~d--------~~aGad~I~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~i~vi 280 (366)
+.+.++.+|+.+ +.+|.+-.- .+.++ .+.|+++|--- -..+..++.+.++++.+ .+||+
T Consensus 199 d~e~v~avR~a~g~d~~l~vDaN~~~~~~~A~~~~~~L~~~~i~~iEqP-------~~~~~~~~~~~~l~~~~--~iPIa 269 (410)
T 3dip_A 199 GLEPFRKIRAAVGQRIEIMCELHSLWGTHAAARICNALADYGVLWVEDP-------IAKMDNIPAVADLRRQT--RAPIC 269 (410)
T ss_dssp HHHHHHHHHHHHTTSSEEEEECTTCBCHHHHHHHHHHGGGGTCSEEECC-------BSCTTCHHHHHHHHHHH--CCCEE
T ss_pred HHHHHHHHHHHcCCCceEEEECCCCCCHHHHHHHHHHHHhcCCCEEECC-------CCCcccHHHHHHHHhhC--CCCEE
Confidence 456789999987 478888743 45555 56788888521 01223577788888877 79999
Q ss_pred EecCCCCHHHHHHHHHhC-cCEEEec
Q 017781 281 LDGGVRRGTDVFKALALG-ASGIFIG 305 (366)
Q Consensus 281 ~~GGI~~~~dv~kalalG-Ad~V~ig 305 (366)
++..+.+..|+.+++..| +|.|++-
T Consensus 270 ~dE~~~~~~~~~~~l~~~~~d~v~~k 295 (410)
T 3dip_A 270 GGENLAGTRRFHEMLCADAIDFVMLD 295 (410)
T ss_dssp ECTTCCSHHHHHHHHHTTCCSEEEEC
T ss_pred ecCCcCCHHHHHHHHHcCCCCeEeec
Confidence 999999999999999998 7999984
|
| >3qw3_A Orotidine-5-phosphate decarboxylase/orotate phosphoribosyltransferase, putative (OMPDCASE-OPRTASE,...; orotidine monophosphate decarboxylase; 1.70A {Leishmania infantum} | Back alignment and structure |
|---|
Probab=85.77 E-value=1.7 Score=39.65 Aligned_cols=77 Identities=22% Similarity=0.297 Sum_probs=47.7
Q ss_pred HcCCcEEEEcCCCccCCCCCcchHHHHHHHHHHcCCCceEEEecCCCC-HHHHHHHHHhCcC----E--EEecHHHHHHh
Q 017781 240 QAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRR-GTDVFKALALGAS----G--IFIGRPVVYSL 312 (366)
Q Consensus 240 ~aGad~I~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~i~vi~~GGI~~-~~dv~kalalGAd----~--V~igr~~l~~l 312 (366)
++|.|+++++.+ ..+.+..+++.+++ .+++ .=||+- +.+...+++.|+| . +.+|||++.+
T Consensus 168 ~~g~~GvV~~at----------~~~e~~~ir~~~~~-~~~l-~PGIg~qg~tp~~a~~~G~d~~~~~~livvGR~I~~A- 234 (255)
T 3qw3_A 168 VNGNVGLVVGAT----------DPVALARVRARAPT-LWFL-VPGIGAQGGSLKASLDAGLRADGSGMLINVSRGLARA- 234 (255)
T ss_dssp GGSCEEEEECSS----------CHHHHHHHHHHCSS-CCEE-ECCC-----CHHHHHHHHCCTTSCCEEEEESHHHHTS-
T ss_pred hhCCeEEEECCC----------CHHHHHHHHHHCCC-CeEE-ECCcCCCCCCHHHHHHcCCCcccCeeEEEeChhhcCC-
Confidence 479999998653 12345677777754 3454 456653 3456677788999 4 9999999875
Q ss_pred hhcCHHHHHHHHHHHHHHHHHH
Q 017781 313 AAEGEKGVRRVLEMLREEFELA 334 (366)
Q Consensus 313 ~~~G~~gv~~~~~~l~~el~~~ 334 (366)
..+ ....+.+++|+...
T Consensus 235 --~dp---~~aa~~i~~~i~~~ 251 (255)
T 3qw3_A 235 --ADP---RAAAKELCEEINAI 251 (255)
T ss_dssp --SCH---HHHHHHHHHHHHHH
T ss_pred --CCH---HHHHHHHHHHHHHH
Confidence 122 34455666666654
|
| >1xi3_A Thiamine phosphate pyrophosphorylase; structural genomics, southeast collaboratory for structural genomics, hyperthermophIle; 1.70A {Pyrococcus furiosus} SCOP: c.1.3.1 | Back alignment and structure |
|---|
Probab=85.76 E-value=5.5 Score=34.30 Aligned_cols=40 Identities=18% Similarity=0.446 Sum_probs=32.9
Q ss_pred CCCHHHHHHHHHhcCCCEEEEeccCHHH----HHcCCcEEEEcC
Q 017781 211 SLSWKDVKWLQTITKLPILVKGVLTAED----VQAGAAGIIVSN 250 (366)
Q Consensus 211 ~~~~~~i~~lr~~~~~pv~vK~v~~~~d----~~aGad~I~vs~ 250 (366)
...|+.++++++..++|+++-|..++++ .++|+|++.++.
T Consensus 148 ~~~~~~l~~l~~~~~~pvia~GGI~~~nv~~~~~~Ga~gv~vgs 191 (215)
T 1xi3_A 148 VIGLEGLRKIVESVKIPVVAIGGINKDNAREVLKTGVDGIAVIS 191 (215)
T ss_dssp CCHHHHHHHHHHHCSSCEEEESSCCTTTHHHHHTTTCSEEEESH
T ss_pred CcCHHHHHHHHHhCCCCEEEECCcCHHHHHHHHHcCCCEEEEhH
Confidence 3578889999988899999988777655 788999998854
|
| >2qkf_A 3-deoxy-D-manno-octulosonic acid 8- phosphate SYN; manno-octulosonate, synthase, lipopolysaccharide, KDOP, KDO8 KDO8PS; 1.75A {Neisseria meningitidis serogroup B} PDB: 3stf_A 3qpy_A 3ste_A 3qpz_A 3qq0_A 3fyo_A* 3qq1_A 3fyp_A* 3stc_A 3stg_A 1phw_A 1g7v_A* 1gg0_A 1phq_A* 1d9e_A 1pl9_A* 1q3n_A* 1x6u_A* 1x8f_A 1g7u_A* | Back alignment and structure |
|---|
Probab=85.69 E-value=2.5 Score=39.13 Aligned_cols=94 Identities=18% Similarity=0.294 Sum_probs=53.8
Q ss_pred CHHHHHHHHHhcCCCEEEEecc--CHHH--------HHcCCcEEEEcCCCccCCCCCc--chHHHHHHHHHHcCCCceEE
Q 017781 213 SWKDVKWLQTITKLPILVKGVL--TAED--------VQAGAAGIIVSNHGARQLDYVP--ATIMALEEVVKATQGRIPVF 280 (366)
Q Consensus 213 ~~~~i~~lr~~~~~pv~vK~v~--~~~d--------~~aGad~I~vs~~gg~~~~~~~--~~~~~l~~i~~~~~~~i~vi 280 (366)
+.+.++++- .++.||++|..+ +.++ ...|.+-+++--.|+.. .... ..+..++.+++.. ..+||+
T Consensus 118 n~~ll~~~a-~~~kPV~lk~G~~~t~~e~~~A~~~i~~~Gn~~i~L~~rg~~~-~~~~~~~dl~~i~~lk~~~-~~~pV~ 194 (280)
T 2qkf_A 118 QTDLVVAMA-KTGNVVNIKKPQFLSPSQMKNIVEKFHEAGNGKLILCERGSSF-GYDNLVVDMLGFGVMKQTC-GNLPVI 194 (280)
T ss_dssp BHHHHHHHH-HTCCEEEEECCTTSCGGGHHHHHHHHHHTTCCCEEEEECCEEC-STTCEECCTTHHHHHHHHT-TTCCEE
T ss_pred CHHHHHHHH-cCCCcEEEECCCCCCHHHHHHHHHHHHHcCCCeEEEEECCCCC-CCCccccCHHHHHHHHHhC-CCCCEE
Confidence 455677774 579999999764 5665 56787555554444321 1111 2445666666543 147999
Q ss_pred Ee-----------cCCCCH-----HH-HHHHHHhCcCEEEecHHHH
Q 017781 281 LD-----------GGVRRG-----TD-VFKALALGASGIFIGRPVV 309 (366)
Q Consensus 281 ~~-----------GGI~~~-----~d-v~kalalGAd~V~igr~~l 309 (366)
+| ||-..+ .. ...|+++||++++|=+-+-
T Consensus 195 ~D~sH~~q~~~~~~~~s~g~~~~~~~~a~aava~Ga~G~~IE~H~~ 240 (280)
T 2qkf_A 195 FDVTHSLQTRDAGSAASGGRRAQALDLALAGMATRLAGLFLESHPD 240 (280)
T ss_dssp EEHHHHCC----------CHHHHHHHHHHHHHTTCCSEEEEEC---
T ss_pred EECCCCccccCccccccCCchhhHHHHHHHHHHcCCCEEEEeecCC
Confidence 96 333334 23 3355679999999998764
|
| >1vli_A Spore coat polysaccharide biosynthesis protein SP; 2636322, JCSG, protein structure initiative, BS SPSE, PSI; 2.38A {Bacillus subtilis} SCOP: b.85.1.1 c.1.10.6 | Back alignment and structure |
|---|
Probab=85.68 E-value=11 Score=36.52 Aligned_cols=79 Identities=14% Similarity=0.090 Sum_probs=53.5
Q ss_pred HHHHHHHHhcCCCEEEEeccCHHH----HHcCCcEEEEcCCCccCCCCCcchHHHHHHHHHHcCCCceEEEecCCCCHHH
Q 017781 215 KDVKWLQTITKLPILVKGVLTAED----VQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTD 290 (366)
Q Consensus 215 ~~i~~lr~~~~~pv~vK~v~~~~d----~~aGad~I~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~i~vi~~GGI~~~~d 290 (366)
+.+.+.++..+++++ =.+.+.++ .+.|+|.+.|... ....+..|.++.+. ..|||.+-|..|-++
T Consensus 104 ~~L~~~~~~~Gi~~~-stpfD~~svd~l~~~~vd~~KIgS~-------~~~N~pLL~~va~~---gKPViLStGmaTl~E 172 (385)
T 1vli_A 104 LPLLDYCREKQVIFL-STVCDEGSADLLQSTSPSAFKIASY-------EINHLPLLKYVARL---NRPMIFSTAGAEISD 172 (385)
T ss_dssp HHHHHHHHHTTCEEE-CBCCSHHHHHHHHTTCCSCEEECGG-------GTTCHHHHHHHHTT---CSCEEEECTTCCHHH
T ss_pred HHHHHHHHHcCCcEE-EccCCHHHHHHHHhcCCCEEEECcc-------cccCHHHHHHHHhc---CCeEEEECCCCCHHH
Confidence 456666666787744 34455554 6789999988431 22356677776642 689999999999999
Q ss_pred HHHHHH----hCcCEEEe
Q 017781 291 VFKALA----LGASGIFI 304 (366)
Q Consensus 291 v~kala----lGAd~V~i 304 (366)
+..|+. .|.+-|.+
T Consensus 173 i~~Ave~i~~~Gn~~iiL 190 (385)
T 1vli_A 173 VHEAWRTIRAEGNNQIAI 190 (385)
T ss_dssp HHHHHHHHHTTTCCCEEE
T ss_pred HHHHHHHHHHCCCCcEEE
Confidence 887775 46644444
|
| >2nv1_A Pyridoxal biosynthesis lyase PDXS; (beta/alpha)8-barrel, synthase; 2.08A {Bacillus subtilis} PDB: 2nv2_A* 1znn_A | Back alignment and structure |
|---|
Probab=85.67 E-value=4.9 Score=37.27 Aligned_cols=83 Identities=24% Similarity=0.246 Sum_probs=53.2
Q ss_pred CHHHHHHHHHhcCCCEEEEeccCHHH----HHcCCcEEEEcC--------CCccCCCCCcchHHHHHHHHHHcCCCceEE
Q 017781 213 SWKDVKWLQTITKLPILVKGVLTAED----VQAGAAGIIVSN--------HGARQLDYVPATIMALEEVVKATQGRIPVF 280 (366)
Q Consensus 213 ~~~~i~~lr~~~~~pv~vK~v~~~~d----~~aGad~I~vs~--------~gg~~~~~~~~~~~~l~~i~~~~~~~i~vi 280 (366)
++...+.+.+..+.++++ .....+- .++|+|+|.+-+ .+|. ......+.+.++++.+ ++||+
T Consensus 9 ~~~~~~~~~~~~~~g~i~-~~~~~~~a~~~~~~Ga~~I~~l~p~~~~~~~~~G~---~~~~~~~~i~~I~~~~--~iPv~ 82 (305)
T 2nv1_A 9 TERVKRGMAEMQKGGVIM-DVINAEQAKIAEEAGAVAVMALERVPADIRAAGGV---ARMADPTIVEEVMNAV--SIPVM 82 (305)
T ss_dssp CHHHHHHHHHTTTTCEEE-EESSHHHHHHHHHTTCSEEEECCC-------CCCC---CCCCCHHHHHHHHHHC--SSCEE
T ss_pred cHHHHHHHHHHccCCeee-cCCHHHHHHHHHHcCCCEEEEcCCCcchhhhccCc---ccCCCHHHHHHHHHhC--CCCEE
Confidence 445555565666777877 4433332 889999994322 1111 0123467788888777 78988
Q ss_pred EecCCCC--HHHHHHHHHhCcCEEE
Q 017781 281 LDGGVRR--GTDVFKALALGASGIF 303 (366)
Q Consensus 281 ~~GGI~~--~~dv~kalalGAd~V~ 303 (366)
+ +++. -.++-.++++|||+|.
T Consensus 83 ~--k~r~g~~~~~~~~~a~GAd~V~ 105 (305)
T 2nv1_A 83 A--KARIGHIVEARVLEAMGVDYID 105 (305)
T ss_dssp E--EECTTCHHHHHHHHHHTCSEEE
T ss_pred e--cccccchHHHHHHHHCCCCEEE
Confidence 5 4555 6677777889999996
|
| >3gr7_A NADPH dehydrogenase; flavin, FMN, beta-alpha-barrel, oxidoreductase, flavoprotein; HET: FMN; 2.30A {Geobacillus kaustophilus} PDB: 3gr8_A* | Back alignment and structure |
|---|
Probab=85.56 E-value=8.4 Score=36.41 Aligned_cols=86 Identities=12% Similarity=0.178 Sum_probs=57.7
Q ss_pred CCceEEEeeec------CCHHHHHHHHHHHHHcCCCEEEEecCCCCCcchhHHHhhhcCCCCccccccccccccCCCccc
Q 017781 122 PGIRFFQLYVY------KDRNVVAQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLTLKNFQGLDLGKMDEA 195 (366)
Q Consensus 122 ~~~~~~Qly~~------~d~~~~~~~l~ra~~~G~~ai~vtvd~p~~g~r~~d~~~~~~~p~~~~~~~~~~~~~~~~~~~ 195 (366)
.-+.++.|.+. .+.+...+++++++++|++.|.++..... +...
T Consensus 209 ~~pv~vRls~~~~~~~g~~~~~~~~la~~L~~~Gvd~i~vs~g~~~--------------~~~~---------------- 258 (340)
T 3gr7_A 209 DGPLFVRISASDYHPDGLTAKDYVPYAKRMKEQGVDLVDVSSGAIV--------------PARM---------------- 258 (340)
T ss_dssp CSCEEEEEESCCCSTTSCCGGGHHHHHHHHHHTTCCEEEEECCCSS--------------CCCC----------------
T ss_pred CCceEEEeccccccCCCCCHHHHHHHHHHHHHcCCCEEEEecCCcc--------------CCCC----------------
Confidence 34677777642 24566778889999999998877532100 0000
Q ss_pred cchhhHHHhhhccCCCCCHHHHHHHHHhcCCCEEEEec-cCHHH----HHcC-CcEEEE
Q 017781 196 NDSGLAAYVAGQIDRSLSWKDVKWLQTITKLPILVKGV-LTAED----VQAG-AAGIIV 248 (366)
Q Consensus 196 ~~~~~~~~~~~~~d~~~~~~~i~~lr~~~~~pv~vK~v-~~~~d----~~aG-ad~I~v 248 (366)
. ..+...++.++++|+.+++||+.-|. .++++ .+.| ||.|.+
T Consensus 259 ----------~-~~~~~~~~~~~~ik~~~~iPVi~~GgI~s~e~a~~~L~~G~aD~V~i 306 (340)
T 3gr7_A 259 ----------N-VYPGYQVPFAELIRREADIPTGAVGLITSGWQAEEILQNGRADLVFL 306 (340)
T ss_dssp ----------C-CCTTTTHHHHHHHHHHTTCCEEEESSCCCHHHHHHHHHTTSCSEEEE
T ss_pred ----------C-CCccccHHHHHHHHHHcCCcEEeeCCCCCHHHHHHHHHCCCeeEEEe
Confidence 0 01234678899999999999998865 46766 7777 999976
|
| >3iwp_A Copper homeostasis protein CUTC homolog; conserved sequence motif, metal-binding site, polymorphism, metal binding protein; 2.50A {Homo sapiens} | Back alignment and structure |
|---|
Probab=85.51 E-value=2.1 Score=39.68 Aligned_cols=69 Identities=28% Similarity=0.329 Sum_probs=49.2
Q ss_pred ccCHHH----HHcCCcEEEEcCCCccCCCCCcchHHHHHHHHHHcCCCceEEEecCCCCH-------------HHHHHHH
Q 017781 233 VLTAED----VQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRG-------------TDVFKAL 295 (366)
Q Consensus 233 v~~~~d----~~aGad~I~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~i~vi~~GGI~~~-------------~dv~kal 295 (366)
+.+.++ .++|||.|-+...- ...+--|+...+..+++.+ ++||.+-=--|.+ .|+..+.
T Consensus 46 ~~s~~~a~~A~~gGAdRIELc~~l--~~GGlTPS~g~i~~a~~~~--~ipV~vMIRPRgGdF~Ys~~E~~~M~~dI~~~~ 121 (287)
T 3iwp_A 46 VDSVESAVNAERGGADRIELCSGL--SEGGTTPSMGVLQVVKQSV--QIPVFVMIRPRGGDFLYSDREIEVMKADIRLAK 121 (287)
T ss_dssp ESSHHHHHHHHHHTCSEEEECBCG--GGTCBCCCHHHHHHHHTTC--CSCEEEECCSSSSCSCCCHHHHHHHHHHHHHHH
T ss_pred eCCHHHHHHHHHhCCCEEEECCCC--CCCCCCCCHHHHHHHHHhc--CCCeEEEEecCCCCcccCHHHHHHHHHHHHHHH
Confidence 357776 88999999976421 0112235667777777766 6888775444444 7999999
Q ss_pred HhCcCEEEec
Q 017781 296 ALGASGIFIG 305 (366)
Q Consensus 296 alGAd~V~ig 305 (366)
++|||+|.+|
T Consensus 122 ~~GAdGvVfG 131 (287)
T 3iwp_A 122 LYGADGLVFG 131 (287)
T ss_dssp HTTCSEEEEC
T ss_pred HcCCCEEEEe
Confidence 9999999999
|
| >3ngj_A Deoxyribose-phosphate aldolase; lyase, structural genomics, structural genomics center for infectious disease, ssgcid; 1.70A {Entamoeba histolytica} | Back alignment and structure |
|---|
Probab=85.45 E-value=6.3 Score=35.53 Aligned_cols=70 Identities=14% Similarity=0.051 Sum_probs=47.5
Q ss_pred HHcCCcEEEEcCCCccCCCCCcc-hHHHHHHHHHHcCC-CceEEEecCCCCHHHHHHH----HHhCcCEEEecHHH
Q 017781 239 VQAGAAGIIVSNHGARQLDYVPA-TIMALEEVVKATQG-RIPVFLDGGVRRGTDVFKA----LALGASGIFIGRPV 308 (366)
Q Consensus 239 ~~aGad~I~vs~~gg~~~~~~~~-~~~~l~~i~~~~~~-~i~vi~~GGI~~~~dv~ka----lalGAd~V~igr~~ 308 (366)
.+.|||.|.+.-.-|.-.++... -.+.+..+++++++ -++||..-|.-+.+.+.++ ..+|||+|=..+-|
T Consensus 105 i~~GAdEIDmViNig~lk~g~~~~v~~eI~~v~~a~~~~~lKVIlEt~~Lt~eei~~a~~ia~~aGADfVKTSTGf 180 (239)
T 3ngj_A 105 VEQGAEEVDMVINIGMVKAKKYDDVEKDVKAVVDASGKALTKVIIECCYLTNEEKVEVCKRCVAAGAEYVKTSTGF 180 (239)
T ss_dssp HHTTCSEEEEECCHHHHHTTCHHHHHHHHHHHHHHHTTSEEEEECCGGGSCHHHHHHHHHHHHHHTCSEEECCCSS
T ss_pred HHcCCCEEEEEeehHHhccccHHHHHHHHHHHHHHhcCCceEEEEecCCCCHHHHHHHHHHHHHHCcCEEECCCCC
Confidence 67799999965332211111111 33456666666643 3788888888899999988 77899999988765
|
| >3kts_A Glycerol uptake operon antiterminator regulatory; structural genomics, PSI-2, protein structur initiative; HET: UNL; 2.75A {Listeria monocytogenes str} | Back alignment and structure |
|---|
Probab=85.39 E-value=0.89 Score=39.78 Aligned_cols=40 Identities=23% Similarity=0.420 Sum_probs=34.0
Q ss_pred CCHHHHHHHHHhcCCCEEEEec-cCHHH----HHcCCcEEEEcCC
Q 017781 212 LSWKDVKWLQTITKLPILVKGV-LTAED----VQAGAAGIIVSNH 251 (366)
Q Consensus 212 ~~~~~i~~lr~~~~~pv~vK~v-~~~~d----~~aGad~I~vs~~ 251 (366)
...+.++++++.+++||++.|. .+.+| .++|||+|+.|+.
T Consensus 137 i~p~iI~~i~~~~~~PiIaGGlI~~~edv~~al~aGA~aVsTs~~ 181 (192)
T 3kts_A 137 IIPEQVQKMTQKLHIPVIAGGLIETSEQVNQVIASGAIAVTTSNK 181 (192)
T ss_dssp TCHHHHHHHHHHHCCCEEEESSCCSHHHHHHHHTTTEEEEEECCG
T ss_pred hhHHHHHHHHHhcCCCEEEECCcCCHHHHHHHHHcCCeEEEeCCH
Confidence 3457899999999999999975 57777 9999999999874
|
| >3n9r_A Fructose-bisphosphate aldolase; FBP aldolase, class II, inhibitor, lyase; HET: TD3; 1.80A {Helicobacter pylori} SCOP: c.1.10.0 PDB: 3c52_A* 3c56_A* 3c4u_A* 3n9s_A* | Back alignment and structure |
|---|
Probab=85.32 E-value=15 Score=34.24 Aligned_cols=101 Identities=19% Similarity=0.142 Sum_probs=67.4
Q ss_pred HHcCCcEEEEcC---CCccCCCCC-cchHHHHHHHHHHcCCCceEEEecCC----------------------CCHHHHH
Q 017781 239 VQAGAAGIIVSN---HGARQLDYV-PATIMALEEVVKATQGRIPVFLDGGV----------------------RRGTDVF 292 (366)
Q Consensus 239 ~~aGad~I~vs~---~gg~~~~~~-~~~~~~l~~i~~~~~~~i~vi~~GGI----------------------~~~~dv~ 292 (366)
.+.|+|.+-++. ||-+...+. .-.++.|.+|.+.. ++|+..=||= ..-+++.
T Consensus 165 ~~TgvD~LAvaiGt~HG~Yk~~~~p~Ld~~~L~~I~~~~--~~PLVlHGgS~vp~~~~~~~~~~gg~~~~~~G~p~e~i~ 242 (307)
T 3n9r_A 165 KESQVDYLAPAIGTSHGAFKFKGEPKLDFERLQEVKRLT--NIPLVLHGASAIPDNVRKSYLDAGGDLKGSKGVPFEFLQ 242 (307)
T ss_dssp HHHCCSEEEECSSCCSSSBCCSSSCCCCHHHHHHHHHHH--CSCEEESSCCCCCHHHHHHHHHTTCCCTTCBCCCHHHHH
T ss_pred HHHCCCEEEEecCCcccccCCCCCCccCHHHHHHHHhcC--CCCeEEeCCCCcchHHHHHHHHhcCccCCCCCCCHHHHH
Confidence 568999999874 553322222 23678899996665 6999998853 2467888
Q ss_pred HHHHhCcCEEEecHHHHHHhhh-------cC-----H-HHHHHHHHHHHHHHHHHHHHcCCC
Q 017781 293 KALALGASGIFIGRPVVYSLAA-------EG-----E-KGVRRVLEMLREEFELAMALSGCR 341 (366)
Q Consensus 293 kalalGAd~V~igr~~l~~l~~-------~G-----~-~gv~~~~~~l~~el~~~m~~~G~~ 341 (366)
|++.+|..-|-|++-+-++... .. + .-+....+.+++-++..|+.+|+.
T Consensus 243 ~ai~~GV~KiNi~Tdl~~a~~~~vr~~~~~~~~~~dpr~~~~~~~~a~~~~v~~~~~~~gs~ 304 (307)
T 3n9r_A 243 ESVKGGINKVNTDTDLRIAFIAEVRKVANEDKSQFDLRKFFSPAQLALKNVVKERMKLLGSA 304 (307)
T ss_dssp HHHHTTEEEEEECHHHHHHHHHHHHHHHHHCTTCCCHHHHHHHHHHHHHHHHHHHHHHHTCT
T ss_pred HHHHcCceEEEechHHHHHHHHHHHHHHHhCCCcCCHHHHHHHHHHHHHHHHHHHHHHhCCC
Confidence 9999999999999976554211 01 1 122333456677777888888864
|
| >3ajx_A 3-hexulose-6-phosphate synthase; HPS, OMPDC suprafamily, LYA; 1.60A {Mycobacterium gastri} | Back alignment and structure |
|---|
Probab=85.30 E-value=8.3 Score=33.11 Aligned_cols=83 Identities=18% Similarity=0.158 Sum_probs=48.5
Q ss_pred HHHHHHHHHhc-CCCEEE--EeccC-HHH-----HHcCCcEEEEcCCCccCCCCCcchHHHHHHHHHHcCCCceEEE-ec
Q 017781 214 WKDVKWLQTIT-KLPILV--KGVLT-AED-----VQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFL-DG 283 (366)
Q Consensus 214 ~~~i~~lr~~~-~~pv~v--K~v~~-~~d-----~~aGad~I~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~i~vi~-~G 283 (366)
.+.++++|+.+ +.|+++ | +.+ ++. .++|+|+|+++...+ ...+..+.+..+.. .+++.+ .-
T Consensus 41 ~~~i~~l~~~~~~~~i~~~l~-~~di~~~~~~~a~~~Gad~v~vh~~~~------~~~~~~~~~~~~~~--g~~~gv~~~ 111 (207)
T 3ajx_A 41 LSVITAVKKAHPDKIVFADMK-TMDAGELEADIAFKAGADLVTVLGSAD------DSTIAGAVKAAQAH--NKGVVVDLI 111 (207)
T ss_dssp THHHHHHHHHSTTSEEEEEEE-ECSCHHHHHHHHHHTTCSEEEEETTSC------HHHHHHHHHHHHHH--TCEEEEECT
T ss_pred HHHHHHHHHhCCCCeEEEEEE-ecCccHHHHHHHHhCCCCEEEEeccCC------hHHHHHHHHHHHHc--CCceEEEEe
Confidence 35788999987 789886 7 345 433 899999999865432 11222222222222 344422 22
Q ss_pred CCCCHHHHHHHH-HhCcCEEEec
Q 017781 284 GVRRGTDVFKAL-ALGASGIFIG 305 (366)
Q Consensus 284 GI~~~~dv~kal-alGAd~V~ig 305 (366)
...++.+.++.+ .+|+|.|.+.
T Consensus 112 s~~~p~~~~~~~~~~g~d~v~~~ 134 (207)
T 3ajx_A 112 GIEDKATRAQEVRALGAKFVEMH 134 (207)
T ss_dssp TCSSHHHHHHHHHHTTCSEEEEE
T ss_pred cCCChHHHHHHHHHhCCCEEEEE
Confidence 334777755444 5799999554
|
| >3vav_A 3-methyl-2-oxobutanoate hydroxymethyltransferase; structural genomics, seattle structural genomics center for infectious disease; 1.80A {Burkholderia thailandensis} SCOP: c.1.12.8 PDB: 3ez4_A | Back alignment and structure |
|---|
Probab=85.29 E-value=23 Score=32.57 Aligned_cols=33 Identities=30% Similarity=0.378 Sum_probs=25.6
Q ss_pred HHcCCcEEEEcCCCccCCCCCcchHHHHHHHHHHcCCCceEEEec
Q 017781 239 VQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDG 283 (366)
Q Consensus 239 ~~aGad~I~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~i~vi~~G 283 (366)
.++|||+|++-+ ++. +...+|.+.+ ++|+|.-|
T Consensus 183 ~eAGA~~ivlE~---------vp~-~~a~~It~~l--~iP~igIG 215 (275)
T 3vav_A 183 EEAGAQLIVLEA---------VPT-LVAAEVTREL--SIPTIGIG 215 (275)
T ss_dssp HHHTCSEEEEES---------CCH-HHHHHHHHHC--SSCEEEES
T ss_pred HHcCCCEEEecC---------CCH-HHHHHHHHhC--CCCEEEEc
Confidence 899999998733 334 3778888888 79999876
|
| >3tml_A 2-dehydro-3-deoxyphosphooctonate aldolase; ssgcid, structural genomics, seattle structural genomics CEN infectious disease; 1.90A {Burkholderia cenocepacia} PDB: 3t4c_A | Back alignment and structure |
|---|
Probab=85.20 E-value=1.9 Score=40.05 Aligned_cols=91 Identities=21% Similarity=0.280 Sum_probs=55.4
Q ss_pred CHHHHHHHHHhcCCCEEEEecc--CHHH--------HHcCC------cEEEEcCCCccCCCCC--cchHHHHHHHHHHcC
Q 017781 213 SWKDVKWLQTITKLPILVKGVL--TAED--------VQAGA------AGIIVSNHGARQLDYV--PATIMALEEVVKATQ 274 (366)
Q Consensus 213 ~~~~i~~lr~~~~~pv~vK~v~--~~~d--------~~aGa------d~I~vs~~gg~~~~~~--~~~~~~l~~i~~~~~ 274 (366)
+.+.++++- .+++||++|..+ +++| .+.|. +-|++--.|- ..... ...+..++.+++ .
T Consensus 120 n~~LLr~~a-~~gkPVilK~G~~~t~~e~~~ave~i~~~Gn~~~~~~~~i~L~erg~-~y~~~~~~vdl~~i~~lk~-~- 195 (288)
T 3tml_A 120 QTDFIHACA-RSGKPVNIKKGQFLAPHDMKNVIDKARDAAREAGLSEDRFMACERGV-SFGYNNLVSDMRSLAIMRE-T- 195 (288)
T ss_dssp CHHHHHHHH-TSSSCEEEECCTTCCTTHHHHHHHHHHHHHHTTTCCSCCEEEEECCE-ECSSSCEECCHHHHHHGGG-G-
T ss_pred CHHHHHHHH-ccCCcEEEeCCCCCCHHHHHHHHHHHHHcCCCccCCCCcEEEEeCCC-CCCCCcCcCCHHHHHHHHh-c-
Confidence 344566654 468999999764 6655 55665 5555433221 11111 125677777765 5
Q ss_pred CCceEEEe---------------cCCCCHH--HHHHHHHhCcCEEEecHHH
Q 017781 275 GRIPVFLD---------------GGVRRGT--DVFKALALGASGIFIGRPV 308 (366)
Q Consensus 275 ~~i~vi~~---------------GGI~~~~--dv~kalalGAd~V~igr~~ 308 (366)
.+||++| ||-|.-- -...|+++|||+++|=.-+
T Consensus 196 -~~pV~~D~sHs~q~p~~~~~~s~G~r~~v~~~a~AAvA~GadGl~iE~H~ 245 (288)
T 3tml_A 196 -NAPVVFDATHSVQLPGGQGTSSGGQREFVPVLARAAVATGVAGLFMETHP 245 (288)
T ss_dssp -SSCEEEEHHHHTCCCC--------CTTHHHHHHHHHHHHCCSEEEEEEES
T ss_pred -CCcEEEcCCcccccCCcccCCCCCchhhHHHHHHHHHHcCCCEEEEeecc
Confidence 7999996 4544332 3457889999999998754
|
| >1vyr_A Pentaerythritol tetranitrate reductase; oxidoreductase, flavoenzyme, explosive degradation, steroid binding; HET: FMN TNF; 0.9A {Enterobacter cloacae} SCOP: c.1.4.1 PDB: 1gvq_A* 1gvr_A* 1gvs_A* 1h50_A* 1h51_A* 1h60_A* 1h61_A* 1h62_A* 1h63_A* 1gvo_A* 2aba_A* 3f03_K* 3kft_A* 3p7y_A* 3p80_A* 3p81_A* 3p62_A* 3p8i_A* 2abb_A* 3p67_A* ... | Back alignment and structure |
|---|
Probab=85.13 E-value=6.2 Score=37.70 Aligned_cols=36 Identities=19% Similarity=0.103 Sum_probs=30.0
Q ss_pred CHHHHHHHHHhcCCCEEEEeccCHHH----HHcC-CcEEEE
Q 017781 213 SWKDVKWLQTITKLPILVKGVLTAED----VQAG-AAGIIV 248 (366)
Q Consensus 213 ~~~~i~~lr~~~~~pv~vK~v~~~~d----~~aG-ad~I~v 248 (366)
.|+.++++|+.+++||+.-+..+.++ .+.| ||+|-+
T Consensus 282 ~~~~~~~v~~~~~iPvi~~Ggit~~~a~~~l~~g~aD~V~~ 322 (364)
T 1vyr_A 282 SEAFRQKVRERFHGVIIGAGAYTAEKAEDLIGKGLIDAVAF 322 (364)
T ss_dssp CHHHHHHHHHHCCSEEEEESSCCHHHHHHHHHTTSCSEEEE
T ss_pred cHHHHHHHHHHCCCCEEEECCcCHHHHHHHHHCCCccEEEE
Confidence 46778999999999999887778876 6666 999976
|
| >1tv5_A Dhodehase, dihydroorotate dehydrogenase homolog, mitochondri, dihydroorotate; alpha-beta barrel, TIM barrel, oxidoreductase; HET: A26 FMN ORO N8E; 2.40A {Plasmodium falciparum} SCOP: c.1.4.1 | Back alignment and structure |
|---|
Probab=85.09 E-value=4.3 Score=40.03 Aligned_cols=98 Identities=20% Similarity=0.273 Sum_probs=61.7
Q ss_pred Cc-eEEEeeecCCHHHHHHHHHHHHHcCCCEEEEecCCCCCcchhHHHhhhcCCCCccccccccccccCCCccccchhhH
Q 017781 123 GI-RFFQLYVYKDRNVVAQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLTLKNFQGLDLGKMDEANDSGLA 201 (366)
Q Consensus 123 ~~-~~~Qly~~~d~~~~~~~l~ra~~~G~~ai~vtvd~p~~g~r~~d~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~ 201 (366)
.| .++.+-+..+.+.+.++++.++++|+++|+++--+. .|. ++ ..+. ... ...++
T Consensus 297 ~P~V~vKispd~~~ed~~~iA~~~~~aGaDgI~v~ntt~---~~~-d~------------~~~~-----~~~-GGlSG-- 352 (443)
T 1tv5_A 297 KPLVFVKLAPDLNQEQKKEIADVLLETNIDGMIISNTTT---QIN-DI------------KSFE-----NKK-GGVSG-- 352 (443)
T ss_dssp CCEEEEEECSCCCHHHHHHHHHHHHHTTCSEEEECCCBS---CCC-CC------------GGGT-----TCC-SEEEE--
T ss_pred CCeEEEEeCCCCCHHHHHHHHHHHHHcCCCEEEEECCCc---ccc-cc------------cccc-----ccc-CCcCC--
Confidence 36 688887666666778889999999999998863321 010 00 0000 000 00000
Q ss_pred HHhhhccCCCCCHHHHHHHHHhc--CCCEEEEe-ccCHHH----HHcCCcEEEEc
Q 017781 202 AYVAGQIDRSLSWKDVKWLQTIT--KLPILVKG-VLTAED----VQAGAAGIIVS 249 (366)
Q Consensus 202 ~~~~~~~d~~~~~~~i~~lr~~~--~~pv~vK~-v~~~~d----~~aGad~I~vs 249 (366)
.. ..+.+++.++++++.+ ++|||.=| +.+.+| ..+|||+|.+.
T Consensus 353 ~~-----~~~~sl~~i~~v~~~v~~~iPVIg~GGI~s~~DA~e~l~aGAd~Vqig 402 (443)
T 1tv5_A 353 AK-----LKDISTKFICEMYNYTNKQIPIIASGGIFSGLDALEKIEAGASVCQLY 402 (443)
T ss_dssp HH-----HHHHHHHHHHHHHHHTTTCSCEEEESSCCSHHHHHHHHHTTEEEEEES
T ss_pred Cc-----chHHHHHHHHHHHHHcCCCCcEEEECCCCCHHHHHHHHHcCCCEEEEc
Confidence 00 0123578899999998 89988764 578888 88999999874
|
| >2wqp_A Polysialic acid capsule biosynthesis protein SIAC; NEUB, inhibitor, TIM barrel, sialic acid synthase, transfera; HET: WQP; 1.75A {Neisseria meningitidis} PDB: 2zdr_A 1xuz_A* 1xuu_A 3cm4_A | Back alignment and structure |
|---|
Probab=84.99 E-value=11 Score=35.80 Aligned_cols=139 Identities=12% Similarity=0.104 Sum_probs=79.8
Q ss_pred cCCHHHHHHHHHHHHHcCCCEEEEecCCCCCcchhHHHhhhcCCCCccccccccccccCCCccccchhhHHHhhhccCCC
Q 017781 132 YKDRNVVAQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLTLKNFQGLDLGKMDEANDSGLAAYVAGQIDRS 211 (366)
Q Consensus 132 ~~d~~~~~~~l~ra~~~G~~ai~vtvd~p~~g~r~~d~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~ 211 (366)
..+.+...++++.|+++|++++=...= ..+.+..... + .+...+ .+...-++... ..
T Consensus 31 ~gs~e~a~~li~~ak~aGadavKfq~~------k~~tl~s~~~-------~---~fq~~~----~~~~~y~~~~~---~~ 87 (349)
T 2wqp_A 31 EGSLKTAFEMVDAAYNAGAEVVKHQTH------IVEDEMSDEA-------K---QVIPGN----ADVSIYEIMER---CA 87 (349)
T ss_dssp TTCHHHHHHHHHHHHHHTCSEEEEEEC------CHHHHCCGGG-------G---GCCCTT----CSSCHHHHHHH---HC
T ss_pred cCCHHHHHHHHHHHHHhCCCEEeeeec------ccccccCcch-------h---ccccCC----CCccHHHHHHH---hC
Confidence 458899999999999999998754221 1111100000 0 000000 00000011111 13
Q ss_pred CCHHH---HHHHHHhcCCCEEEEeccCHHH----HHcCCcEEEEcCCCccCCCCCcchHHHHHHHHHHcCCCceEEEecC
Q 017781 212 LSWKD---VKWLQTITKLPILVKGVLTAED----VQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGG 284 (366)
Q Consensus 212 ~~~~~---i~~lr~~~~~pv~vK~v~~~~d----~~aGad~I~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~i~vi~~GG 284 (366)
+.|+. +.+.++..+++++ =.+.+.++ .+.|+|.+.+... ....+..|.++.+. ..|||.+-|
T Consensus 88 l~~e~~~~L~~~~~~~Gi~~~-st~~d~~svd~l~~~~v~~~KI~S~-------~~~n~~LL~~va~~---gkPviLstG 156 (349)
T 2wqp_A 88 LNEEDEIKLKEYVESKGMIFI-STLFSRAAALRLQRMDIPAYKIGSG-------ECNNYPLIKLVASF---GKPIILSTG 156 (349)
T ss_dssp CCHHHHHHHHHHHHHTTCEEE-EEECSHHHHHHHHHHTCSCEEECGG-------GTTCHHHHHHHHTT---CSCEEEECT
T ss_pred CCHHHHHHHHHHHHHhCCeEE-EeeCCHHHHHHHHhcCCCEEEECcc-------cccCHHHHHHHHhc---CCeEEEECC
Confidence 45554 4455555677754 44556655 7889999988431 22356677777642 689999999
Q ss_pred CCCHHHHHHHHH----hCcCEEEe
Q 017781 285 VRRGTDVFKALA----LGASGIFI 304 (366)
Q Consensus 285 I~~~~dv~kala----lGAd~V~i 304 (366)
..|-+++..|+. .|.+.+.+
T Consensus 157 mat~~Ei~~Ave~i~~~G~~iiLl 180 (349)
T 2wqp_A 157 MNSIESIKKSVEIIREAGVPYALL 180 (349)
T ss_dssp TCCHHHHHHHHHHHHHHTCCEEEE
T ss_pred CCCHHHHHHHHHHHHHcCCCEEEE
Confidence 999999887764 46655544
|
| >2e6f_A Dihydroorotate dehydrogenase; chagas disease, pyrimidine biosynthesis, fumarate reductase, energy metabolism, redox homeostasis, flavoprotein; HET: FMN OXC; 1.26A {Trypanosoma cruzi} PDB: 2e6a_A* 2e6d_A* 2e68_A* 2djl_A* 2djx_A* 3c3n_A* 2b4g_A* 3c61_A* 3mhu_A* 3mjy_A* | Back alignment and structure |
|---|
Probab=84.85 E-value=2.6 Score=39.12 Aligned_cols=107 Identities=17% Similarity=0.073 Sum_probs=61.4
Q ss_pred CCceEEEeeecCCHHHHHHHHHHHHHcC-CCEEEEecCCCCCcchhHHHhhhcCCCCccccccccccccCCCccccchhh
Q 017781 122 PGIRFFQLYVYKDRNVVAQLVRRAERAG-FKAIALTVDTPRLGRREADIKNRFTLPPFLTLKNFQGLDLGKMDEANDSGL 200 (366)
Q Consensus 122 ~~~~~~Qly~~~d~~~~~~~l~ra~~~G-~~ai~vtvd~p~~g~r~~d~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~ 200 (366)
..|.++.+....+.+.+.+++++++++| ++++.++-- ...+.. -|..... | .... ..... +.
T Consensus 160 ~~Pv~vK~~~~~~~~~~~~~a~~~~~aG~~d~i~v~~~-~~~~~~-i~~~~~~--~---~~~~--------~~~~g--G~ 222 (314)
T 2e6f_A 160 GLPFGVKMPPYFDIAHFDTAAAVLNEFPLVKFVTCVNS-VGNGLV-IDAESES--V---VIKP--------KQGFG--GL 222 (314)
T ss_dssp CSCEEEEECCCCCHHHHHHHHHHHHTCTTEEEEEECCC-EEEEEC-EETTTTE--E---SCCG--------GGGEE--EE
T ss_pred CCCEEEEECCCCCHHHHHHHHHHHHhcCCceEEEEeCC-CCcccc-ccCCCCC--c---cccc--------CcCCC--cc
Confidence 3578888876667777788889999999 999876421 100000 0000000 0 0000 00000 00
Q ss_pred HHHhhhccCCCCCHHHHHHHHHhc-CCCEEEEe-ccCHHH----HHcCCcEEEEc
Q 017781 201 AAYVAGQIDRSLSWKDVKWLQTIT-KLPILVKG-VLTAED----VQAGAAGIIVS 249 (366)
Q Consensus 201 ~~~~~~~~d~~~~~~~i~~lr~~~-~~pv~vK~-v~~~~d----~~aGad~I~vs 249 (366)
......+..|+.++++++.+ ++||+.=| +.+.+| ..+|||+|.+.
T Consensus 223 ----sg~~~~p~~~~~i~~v~~~~~~ipvi~~GGI~~~~da~~~l~~GAd~V~ig 273 (314)
T 2e6f_A 223 ----GGKYILPTALANVNAFYRRCPDKLVFGCGGVYSGEDAFLHILAGASMVQVG 273 (314)
T ss_dssp ----ESGGGHHHHHHHHHHHHHHCTTSEEEEESSCCSHHHHHHHHHHTCSSEEEC
T ss_pred ----CcccccHHHHHHHHHHHHhcCCCCEEEECCCCCHHHHHHHHHcCCCEEEEc
Confidence 00001123578899999998 89988775 467887 78899999874
|
| >3bw2_A 2-nitropropane dioxygenase; TIM barrel, oxidoreductase; HET: FMN; 2.10A {Streptomyces ansochromogenes} PDB: 3bw4_A* 3bw3_A* | Back alignment and structure |
|---|
Probab=84.81 E-value=6.1 Score=37.66 Aligned_cols=53 Identities=8% Similarity=0.044 Sum_probs=39.6
Q ss_pred HHcCCcEEEEcCCCccCCCCCcchHHHHHHHHHHcCCCceEEEecCCCCHHHHHHHHHhCcCEEEe
Q 017781 239 VQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFI 304 (366)
Q Consensus 239 ~~aGad~I~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~i~vi~~GGI~~~~dv~kalalGAd~V~i 304 (366)
.+.|+|.|.++. | .+..+.+..+++. .++|+. .+.+.+++.++...|+|+|.+
T Consensus 119 ~~~g~~~V~~~~--g------~~~~~~i~~~~~~---g~~v~~--~v~t~~~a~~a~~~GaD~i~v 171 (369)
T 3bw2_A 119 LDDPVPVVSFHF--G------VPDREVIARLRRA---GTLTLV--TATTPEEARAVEAAGADAVIA 171 (369)
T ss_dssp HHSCCSEEEEES--S------CCCHHHHHHHHHT---TCEEEE--EESSHHHHHHHHHTTCSEEEE
T ss_pred HhcCCCEEEEeC--C------CCcHHHHHHHHHC---CCeEEE--ECCCHHHHHHHHHcCCCEEEE
Confidence 889999998743 2 1335566666542 567776 478999999999999999998
|
| >2r8w_A AGR_C_1641P; APC7498, dihydrodipicolinate synthase, agrobacterium tumefac C58, structural genomics, PSI-2; HET: MSE; 1.80A {Agrobacterium tumefaciens str} | Back alignment and structure |
|---|
Probab=84.69 E-value=26 Score=32.84 Aligned_cols=178 Identities=13% Similarity=0.018 Sum_probs=93.0
Q ss_pred ceEecccccccccCChhhHHHHHHHHHcCCceec--C---CCCCCCHHHHhc-------c-CC-CceEEEeeecCCHHHH
Q 017781 73 PIMIAPTAMQKMAHPEGEYATARAASAAGTIMTL--S---SWSTSSVEEVAS-------T-GP-GIRFFQLYVYKDRNVV 138 (366)
Q Consensus 73 Pi~iApm~~~~l~~~~~e~~la~aa~~~G~~~~v--s---~~~~~~~e~i~~-------~-~~-~~~~~Qly~~~d~~~~ 138 (366)
|.++.|+.-.+-...++-..+++-.-+.|+...+ + +..+.+.+|-.+ . .. .|.+...- ..+.+..
T Consensus 40 ~a~vTPF~~dg~iD~~~l~~lv~~li~~Gv~Gl~v~GtTGE~~~Ls~eEr~~vi~~~ve~~~grvpViaGvg-~~st~ea 118 (332)
T 2r8w_A 40 AFPITPADEAGRVDIEAFSALIARLDAAEVDSVGILGSTGIYMYLTREERRRAIEAAATILRGRRTLMAGIG-ALRTDEA 118 (332)
T ss_dssp ECCCCCBCTTCCBCHHHHHHHHHHHHHHTCSEEEESSTTTTGGGSCHHHHHHHHHHHHHHHTTSSEEEEEEC-CSSHHHH
T ss_pred EEeeCCcCCCCCcCHHHHHHHHHHHHHcCCCEEEECccccChhhCCHHHHHHHHHHHHHHhCCCCcEEEecC-CCCHHHH
Confidence 4445565322222222334666666677875543 3 334566665432 1 22 35666654 3455667
Q ss_pred HHHHHHHHHcCCCEEEEecCCCCCcchhHHHhhhcCCCCccccccccccccCCCccccchhhHHHhhhccCCCCCHHHHH
Q 017781 139 AQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLTLKNFQGLDLGKMDEANDSGLAAYVAGQIDRSLSWKDVK 218 (366)
Q Consensus 139 ~~~l~ra~~~G~~ai~vtvd~p~~g~r~~d~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~i~ 218 (366)
.++.+.|+++|++++.+. +|.. ++ | ...-..+..+
T Consensus 119 i~la~~A~~~Gadavlv~--~P~Y-~~----------~--------------------------------s~~~l~~~f~ 153 (332)
T 2r8w_A 119 VALAKDAEAAGADALLLA--PVSY-TP----------L--------------------------------TQEEAYHHFA 153 (332)
T ss_dssp HHHHHHHHHHTCSEEEEC--CCCS-SC----------C--------------------------------CHHHHHHHHH
T ss_pred HHHHHHHHhcCCCEEEEC--CCCC-CC----------C--------------------------------CHHHHHHHHH
Confidence 788899999999998873 2321 00 0 0000123345
Q ss_pred HHHHhcCCCEEEEec-------cCHHH----HHc-CCcEEEEcCCCccCCCCCc-chHHHHHHHHHHcCCCceEEEecCC
Q 017781 219 WLQTITKLPILVKGV-------LTAED----VQA-GAAGIIVSNHGARQLDYVP-ATIMALEEVVKATQGRIPVFLDGGV 285 (366)
Q Consensus 219 ~lr~~~~~pv~vK~v-------~~~~d----~~a-Gad~I~vs~~gg~~~~~~~-~~~~~l~~i~~~~~~~i~vi~~GGI 285 (366)
.+-+.+++||++=.+ ++++. .+. .+-+|.-+. | .. ..+..+.++++..++++.|+ +|
T Consensus 154 ~VA~a~~lPiilYn~P~~tg~~l~~e~~~~La~~pnIvgiKdss--g-----d~~~~~~~~~~l~~~~~~~f~v~-~G-- 223 (332)
T 2r8w_A 154 AVAGATALPLAIYNNPTTTRFTFSDELLVRLAYIPNIRAIKMPL--P-----ADADYAGELARLRPKLSDDFAIG-YS-- 223 (332)
T ss_dssp HHHHHCSSCEEEECCHHHHCCCCCHHHHHHHHTSTTEEEEEECC--C-----TTCCHHHHHHHHTTTSCTTCEEE-EC--
T ss_pred HHHHhcCCCEEEEeCccccCcCCCHHHHHHHHcCCCEEEEEeCC--C-----CchhHHHHHHHHHHhcCCCEEEE-eC--
Confidence 555667788887654 23443 211 122222211 1 00 01455555555444445444 45
Q ss_pred CCHHHHHHHHHhCcCEEEecHH
Q 017781 286 RRGTDVFKALALGASGIFIGRP 307 (366)
Q Consensus 286 ~~~~dv~kalalGAd~V~igr~ 307 (366)
+..-++.++++||+++.-+..
T Consensus 224 -~D~~~l~~l~~G~~G~is~~a 244 (332)
T 2r8w_A 224 -GDWGCTDATLAGGDTWYSVVA 244 (332)
T ss_dssp -CHHHHHHHHHTTCSEEEESGG
T ss_pred -chHHHHHHHHCCCCEEEeCHH
Confidence 355678899999999998864
|
| >3fcp_A L-Ala-D/L-Glu epimerase, A muconate lactonizing enzyme; structural genomics, nysgrc,target 9450E, PSI-2; 1.80A {Klebsiella pneumoniae subsp} | Back alignment and structure |
|---|
Probab=84.33 E-value=8.9 Score=36.71 Aligned_cols=84 Identities=14% Similarity=0.089 Sum_probs=57.6
Q ss_pred HHHHHHHHHhcC--CCEEEEec--cCHHH--------HHcCCcEEEEcCCCccCCCCCcchHHHHHHHHHHcCCCceEEE
Q 017781 214 WKDVKWLQTITK--LPILVKGV--LTAED--------VQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFL 281 (366)
Q Consensus 214 ~~~i~~lr~~~~--~pv~vK~v--~~~~d--------~~aGad~I~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~i~vi~ 281 (366)
.+.++.+|+.++ .++.+..- .+.++ .+.|+.+|- +. ..+..++.+.++++.. .+||.+
T Consensus 180 ~~~v~avR~a~g~~~~l~vDaN~~~~~~~A~~~~~~l~~~~i~~iE-------eP-~~~~d~~~~~~l~~~~--~ipIa~ 249 (381)
T 3fcp_A 180 LRHTRAIVEALGDRASIRVDVNQAWDAATGAKGCRELAAMGVDLIE-------QP-VSAHDNAALVRLSQQI--ETAILA 249 (381)
T ss_dssp HHHHHHHHHHTCTTCEEEEECTTCBCHHHHHHHHHHHHHTTCSEEE-------CC-BCTTCHHHHHHHHHHS--SSEEEE
T ss_pred HHHHHHHHHHcCCCCeEEEECCCCCCHHHHHHHHHHHhhcCcccee-------CC-CCcccHHHHHHHHHhC--CCCEEE
Confidence 445666776652 45555532 23333 455666663 11 1233578888888877 799999
Q ss_pred ecCCCCHHHHHHHHHhC-cCEEEecHH
Q 017781 282 DGGVRRGTDVFKALALG-ASGIFIGRP 307 (366)
Q Consensus 282 ~GGI~~~~dv~kalalG-Ad~V~igr~ 307 (366)
+--+.+..|+.+++..| +|.|++--.
T Consensus 250 dE~~~~~~~~~~~~~~~a~d~v~~k~~ 276 (381)
T 3fcp_A 250 DEAVATAYDGYQLAQQGFTGAYALKIA 276 (381)
T ss_dssp STTCCSHHHHHHHHHTTCCSEEEECHH
T ss_pred CCCcCCHHHHHHHHHcCCCCEEEeccc
Confidence 99999999999999986 899998643
|
| >1o60_A 2-dehydro-3-deoxyphosphooctonate aldolase; structural genomics, transferase; 1.80A {Haemophilus influenzae} SCOP: c.1.10.4 PDB: 3e9a_A | Back alignment and structure |
|---|
Probab=83.62 E-value=3.3 Score=38.51 Aligned_cols=93 Identities=24% Similarity=0.334 Sum_probs=55.2
Q ss_pred CHHHHHHHHHhcCCCEEEEecc--CHHH--------HHcCCcEEEEcCCCccCCCCCc--chHHHHHHHHHHcCCCceEE
Q 017781 213 SWKDVKWLQTITKLPILVKGVL--TAED--------VQAGAAGIIVSNHGARQLDYVP--ATIMALEEVVKATQGRIPVF 280 (366)
Q Consensus 213 ~~~~i~~lr~~~~~pv~vK~v~--~~~d--------~~aGad~I~vs~~gg~~~~~~~--~~~~~l~~i~~~~~~~i~vi 280 (366)
+.+.++++- .+++||++|..+ ++++ ...|.+-+++--.|+.. .... ..+..++.+++.. ..+||+
T Consensus 121 n~~Ll~~~a-~~~kPV~lk~G~~~t~~ei~~Av~~i~~~Gn~~i~L~~rg~~~-~y~~~~~dl~~i~~lk~~~-~~~pV~ 197 (292)
T 1o60_A 121 QTDLVEAMA-KTGAVINVKKPQFLSPSQMGNIVEKIEECGNDKIILCDRGTNF-GYDNLIVDMLGFSVMKKAS-KGSPVI 197 (292)
T ss_dssp CHHHHHHHH-HTTCEEEEECCTTSCGGGHHHHHHHHHHTTCCCEEEEECCEEC-STTCEECCTTHHHHHHHHT-TSCCEE
T ss_pred CHHHHHHHH-cCCCcEEEeCCCCCCHHHHHHHHHHHHHcCCCeEEEEECCCCC-CCCccccCHHHHHHHHhhC-CCCCEE
Confidence 455677776 469999999764 5665 66787555554444321 1111 2445566665543 147999
Q ss_pred Eec-----------CCCCH-----HHHH-HHHHhCcCEEEecHHH
Q 017781 281 LDG-----------GVRRG-----TDVF-KALALGASGIFIGRPV 308 (366)
Q Consensus 281 ~~G-----------GI~~~-----~dv~-kalalGAd~V~igr~~ 308 (366)
+|. +-..+ ..+. .|+++||++++|=+-|
T Consensus 198 ~D~sH~~q~p~~~~~~~~g~~~~~~~ia~aAva~Ga~Gl~IE~H~ 242 (292)
T 1o60_A 198 FDVTHSLQCRDPFGAASSGRRAQVTELARSGLAVGIAGLFLEAHP 242 (292)
T ss_dssp EEHHHHCC------------CTTHHHHHHHHHHHCCSEEEEEEES
T ss_pred EECCCcccccCccccCCCCChhHHHHHHHHHHHcCCCEEEEEecC
Confidence 942 22233 2343 6678999999999865
|
| >2zbt_A Pyridoxal biosynthesis lyase PDXS; pyridoxine biosynthesis, structural genomics, NPPSFA; 1.65A {Thermus thermophilus} PDB: 2iss_A* | Back alignment and structure |
|---|
Probab=83.57 E-value=2.9 Score=38.53 Aligned_cols=73 Identities=22% Similarity=0.271 Sum_probs=49.7
Q ss_pred cCCCEEEEeccCHHH----HHcCCcEEEEcC--------CCccCCCCCcchHHHHHHHHHHcCCCceEEEecCCCCHHHH
Q 017781 224 TKLPILVKGVLTAED----VQAGAAGIIVSN--------HGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDV 291 (366)
Q Consensus 224 ~~~pv~vK~v~~~~d----~~aGad~I~vs~--------~gg~~~~~~~~~~~~l~~i~~~~~~~i~vi~~GGI~~~~dv 291 (366)
.+.|+++ .+...+- .++|+++|.+.. .+|.. .....+.+.++++.+ ++|+++..++.+.+++
T Consensus 20 ~~~~~i~-~~~~~~~a~~~~~~Ga~~i~~~e~v~~~~~~~~G~~---~~~~~~~i~~i~~~~--~~Pvi~~~~~~~~~~~ 93 (297)
T 2zbt_A 20 FKGGVIM-DVTTPEQAVIAEEAGAVAVMALERVPADIRAQGGVA---RMSDPKIIKEIMAAV--SIPVMAKVRIGHFVEA 93 (297)
T ss_dssp GTTEEEE-EESSHHHHHHHHHHTCSEEEECSSCHHHHHHTTCCC---CCCCHHHHHHHHTTC--SSCEEEEEETTCHHHH
T ss_pred hhCCeee-eechHHHHHHHHHCCCcEEEeccccchHHHhhcCCc---cCCCHHHHHHHHHhc--CCCeEEEeccCCHHHH
Confidence 3556665 3333332 889999997621 11111 122456777777665 7899998888888889
Q ss_pred HHHHHhCcCEE
Q 017781 292 FKALALGASGI 302 (366)
Q Consensus 292 ~kalalGAd~V 302 (366)
-.++++|||+|
T Consensus 94 ~~~~~aGad~v 104 (297)
T 2zbt_A 94 MILEAIGVDFI 104 (297)
T ss_dssp HHHHHTTCSEE
T ss_pred HHHHHCCCCEE
Confidence 99999999999
|
| >4e8g_A Enolase, mandelate racemase/muconate lactonizing enzyme, N domain protein; putative racemase, nysgrc, structural genomics, PSI-biology; 2.00A {Paracoccus denitrificans} | Back alignment and structure |
|---|
Probab=83.43 E-value=10 Score=36.51 Aligned_cols=45 Identities=16% Similarity=0.223 Sum_probs=37.8
Q ss_pred chHHHHHHHHHHcCCCceEEEecCCCCHHHHHHHHHhC-cCEEEecHH
Q 017781 261 ATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALG-ASGIFIGRP 307 (366)
Q Consensus 261 ~~~~~l~~i~~~~~~~i~vi~~GGI~~~~dv~kalalG-Ad~V~igr~ 307 (366)
..++.+.++++.. .+||.++--+.+..|+.+++..| +|.|++--.
T Consensus 245 ~~~~~~~~l~~~~--~iPIa~dE~~~~~~~~~~~~~~~a~d~v~ik~~ 290 (391)
T 4e8g_A 245 NTLEEIAAIRGRV--QHGIYLDESGEDLSTVIRAAGQGLCDGFGMKLT 290 (391)
T ss_dssp SSHHHHHHHGGGC--CSCEEESTTCCSHHHHHHHHHTTCCSEEEEEHH
T ss_pred ccHHHHHHHHhhC--CCCEEeCCCCCCHHHHHHHHHcCCCCEEEeCcc
Confidence 3567777777766 79999999999999999999987 799998643
|
| >3o63_A Probable thiamine-phosphate pyrophosphorylase; thiamin biosynthesis, TIM barrel, transferase; 2.35A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=83.34 E-value=8.1 Score=34.77 Aligned_cols=40 Identities=23% Similarity=0.294 Sum_probs=31.7
Q ss_pred CCCHHHHHHHHHh--cCCCEEEEeccCHHH----HHcCCcEEEEcC
Q 017781 211 SLSWKDVKWLQTI--TKLPILVKGVLTAED----VQAGAAGIIVSN 250 (366)
Q Consensus 211 ~~~~~~i~~lr~~--~~~pv~vK~v~~~~d----~~aGad~I~vs~ 250 (366)
...++.++++++. .++|++.-|..+.++ .++|+|+|.|..
T Consensus 175 ~~gl~~l~~~~~~~~~~iPvvAiGGI~~~ni~~~~~aGa~gvav~s 220 (243)
T 3o63_A 175 APGLGLVRVAAELGGDDKPWFAIGGINAQRLPAVLDAGARRIVVVR 220 (243)
T ss_dssp CCCHHHHHHHHTC---CCCEEEESSCCTTTHHHHHHTTCCCEEESH
T ss_pred hhhHHHHHHHHHhccCCCCEEEecCCCHHHHHHHHHcCCCEEEEeH
Confidence 3578889999886 489999887767665 899999998743
|
| >1p0k_A Isopentenyl-diphosphate delta-isomerase; terpene biosynthesis, dimethylallyl diphosphate, flavoprotein; 1.90A {Bacillus subtilis} SCOP: c.1.4.1 PDB: 1p0n_A* | Back alignment and structure |
|---|
Probab=83.21 E-value=7.3 Score=36.74 Aligned_cols=80 Identities=18% Similarity=0.163 Sum_probs=53.3
Q ss_pred cCCCEEEEec--cCHHH-----HHcCCcEEEEcCCCccC---CCCCc---chHHHHHHHHHHcCCCceEEEe--cCCCCH
Q 017781 224 TKLPILVKGV--LTAED-----VQAGAAGIIVSNHGARQ---LDYVP---ATIMALEEVVKATQGRIPVFLD--GGVRRG 288 (366)
Q Consensus 224 ~~~pv~vK~v--~~~~d-----~~aGad~I~vs~~gg~~---~~~~~---~~~~~l~~i~~~~~~~i~vi~~--GGI~~~ 288 (366)
.+.|+++... .+.++ .++|+|+|.+......+ ..+.+ ..++.+.++++.+ ++||++- |...+.
T Consensus 115 ~~~pv~~~i~~~~~~~~~~~~~~~~gad~i~i~~~~~~~~~~~~~~~~~~~~~~~i~~vr~~~--~~Pv~vK~~~~~~~~ 192 (349)
T 1p0k_A 115 PNGLIFANLGSEATAAQAKEAVEMIGANALQIHLNVIQEIVMPEGDRSFSGALKRIEQICSRV--SVPVIVKEVGFGMSK 192 (349)
T ss_dssp SSSCEEEEEETTCCHHHHHHHHHHTTCSEEEEEECTTTTC--------CTTHHHHHHHHHHHC--SSCEEEEEESSCCCH
T ss_pred CCceeEEeecCCCCHHHHHHHHHhcCCCeEEecccchhhhcCCCCCcchHHHHHHHHHHHHHc--CCCEEEEecCCCCCH
Confidence 4788887654 34544 67899999775321110 00111 1457788888777 7898885 444689
Q ss_pred HHHHHHHHhCcCEEEec
Q 017781 289 TDVFKALALGASGIFIG 305 (366)
Q Consensus 289 ~dv~kalalGAd~V~ig 305 (366)
+++.++..+|||+|.+.
T Consensus 193 ~~a~~a~~~Gad~I~v~ 209 (349)
T 1p0k_A 193 ASAGKLYEAGAAAVDIG 209 (349)
T ss_dssp HHHHHHHHHTCSEEEEE
T ss_pred HHHHHHHHcCCCEEEEc
Confidence 99999999999999994
|
| >3fv9_G Mandelate racemase/muconate lactonizing enzyme; structural genomics, mandelate racemase/muconatelactonizing hydrolase, PSI-2; 1.90A {Roseovarius nubinhibens ism} PDB: 2pce_A | Back alignment and structure |
|---|
Probab=83.00 E-value=9 Score=36.79 Aligned_cols=120 Identities=16% Similarity=0.138 Sum_probs=76.3
Q ss_pred cCCHHHHHHHHHHHHHcCCCEEEEecCCCCCcchhHHHhhhcCCCCccccccccccccCCCccccchhhHHHhhhccCCC
Q 017781 132 YKDRNVVAQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLTLKNFQGLDLGKMDEANDSGLAAYVAGQIDRS 211 (366)
Q Consensus 132 ~~d~~~~~~~l~ra~~~G~~ai~vtvd~p~~g~r~~d~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~ 211 (366)
..+++.+.+.++++.+.|++++=+.++++... .++.
T Consensus 143 ~~~~e~~~~~a~~~~~~G~~~~K~Kvg~~~~~--------------------------------------------~~~~ 178 (386)
T 3fv9_G 143 GDTPEAMRAKVARHRAQGFKGHSIKIGASEAE--------------------------------------------GGPA 178 (386)
T ss_dssp SCCHHHHHHHHHHHHHTTCCEEEEECCCCTTT--------------------------------------------THHH
T ss_pred CCCHHHHHHHHHHHHHCCCCEEEEeccCCCCC--------------------------------------------CCHH
Confidence 35777777788888889999998877643100 0011
Q ss_pred CCHHHHHHHHHhc--CCCEEEEec--cCHHH-----HH--cCCc-EEEEcCCCccCCCCCcchHHHHHHHHHHcCCCceE
Q 017781 212 LSWKDVKWLQTIT--KLPILVKGV--LTAED-----VQ--AGAA-GIIVSNHGARQLDYVPATIMALEEVVKATQGRIPV 279 (366)
Q Consensus 212 ~~~~~i~~lr~~~--~~pv~vK~v--~~~~d-----~~--aGad-~I~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~i~v 279 (366)
.+.+.++.+|+.+ +.++.+..- .+.++ .. .+.+ +|- + -.+.++.+.++++.. .+||
T Consensus 179 ~d~~~v~avR~a~G~~~~L~vDaN~~~~~~~A~~~~~~l~~~~~i~iE-------e---P~~~~~~~~~l~~~~--~iPI 246 (386)
T 3fv9_G 179 LDAERITACLADRQPGEWYLADANNGLTVEHALRMLSLLPPGLDIVLE-------A---PCASWAETKSLRARC--ALPL 246 (386)
T ss_dssp HHHHHHHHHTTTCCTTCEEEEECTTCCCHHHHHHHHHHSCSSCCCEEE-------C---CCSSHHHHHHHHTTC--CSCE
T ss_pred HHHHHHHHHHHHcCCCCeEEEECCCCCCHHHHHHHHHHhhccCCcEEe-------c---CCCCHHHHHHHHhhC--CCCE
Confidence 2334566666665 355666532 34433 11 1112 221 1 112567777777666 7999
Q ss_pred EEecCCCCHHHHHHHHHhC-cCEEEecHH
Q 017781 280 FLDGGVRRGTDVFKALALG-ASGIFIGRP 307 (366)
Q Consensus 280 i~~GGI~~~~dv~kalalG-Ad~V~igr~ 307 (366)
.++.-+.+..|+.+++..| +|.|++--.
T Consensus 247 a~dE~~~~~~~~~~~~~~~a~d~v~~k~~ 275 (386)
T 3fv9_G 247 LLDELIQTETDLIAAIRDDLCDGVGLKVS 275 (386)
T ss_dssp EESTTCCSHHHHHHHHHTTCCSEEEEEHH
T ss_pred EeCCCcCCHHHHHHHHHhCCCCEEEECcc
Confidence 9999999999999999987 899998643
|
| >2gou_A Oxidoreductase, FMN-binding; OLD yeallow enzyme, flavoenzyme; HET: BOG FMN PE4; 1.40A {Shewanella oneidensis} PDB: 2gq8_A* 2gq9_A* 2gqa_A* | Back alignment and structure |
|---|
Probab=82.77 E-value=6.1 Score=37.77 Aligned_cols=36 Identities=19% Similarity=0.121 Sum_probs=29.9
Q ss_pred CHHHHHHHHHhcCCCEEEEeccCHHH----HHcC-CcEEEE
Q 017781 213 SWKDVKWLQTITKLPILVKGVLTAED----VQAG-AAGIIV 248 (366)
Q Consensus 213 ~~~~i~~lr~~~~~pv~vK~v~~~~d----~~aG-ad~I~v 248 (366)
.|+.++++|+.+++||+.-|..++++ .+.| ||+|-+
T Consensus 281 ~~~~~~~i~~~~~iPvi~~Ggi~~~~a~~~l~~g~aD~V~i 321 (365)
T 2gou_A 281 PVSFKRALREAYQGVLIYAGRYNAEKAEQAINDGLADMIGF 321 (365)
T ss_dssp CHHHHHHHHHHCCSEEEEESSCCHHHHHHHHHTTSCSEEEC
T ss_pred cHHHHHHHHHHCCCcEEEeCCCCHHHHHHHHHCCCcceehh
Confidence 46778999999999999887668876 7777 999965
|
| >3jr2_A Hexulose-6-phosphate synthase SGBH; 3-keto-L-gulonate-6-phosphate decarboxylase, ULAD, niaid,CSG bound, biosynthetic protein; HET: MSE; 1.80A {Vibrio cholerae} SCOP: c.1.2.0 PDB: 3ieb_A* | Back alignment and structure |
|---|
Probab=82.76 E-value=9.1 Score=33.46 Aligned_cols=83 Identities=20% Similarity=0.037 Sum_probs=52.6
Q ss_pred HHHHHHHHHhc-CCCE--EEEeccCHHH-----HHcCCcEEEEcCCCccCCCCCcchH-HHHHHHHHHcCCCceEEE-ec
Q 017781 214 WKDVKWLQTIT-KLPI--LVKGVLTAED-----VQAGAAGIIVSNHGARQLDYVPATI-MALEEVVKATQGRIPVFL-DG 283 (366)
Q Consensus 214 ~~~i~~lr~~~-~~pv--~vK~v~~~~d-----~~aGad~I~vs~~gg~~~~~~~~~~-~~l~~i~~~~~~~i~vi~-~G 283 (366)
.+.|+++|+.. +.|+ -+|....++. .++|+|+|+++..++ ...+ +.+..+++ . .+..++ .=
T Consensus 47 ~~~i~~lr~~~~~~~i~ld~~l~d~p~~~~~~~~~aGad~i~vh~~~~------~~~~~~~~~~~~~-~--g~~~~~d~l 117 (218)
T 3jr2_A 47 MKAVSTLRHNHPNHILVCDMKTTDGGAILSRMAFEAGADWITVSAAAH------IATIAACKKVADE-L--NGEIQIEIY 117 (218)
T ss_dssp THHHHHHHHHCTTSEEEEEEEECSCHHHHHHHHHHHTCSEEEEETTSC------HHHHHHHHHHHHH-H--TCEEEEECC
T ss_pred HHHHHHHHHhCCCCcEEEEEeecccHHHHHHHHHhcCCCEEEEecCCC------HHHHHHHHHHHHH-h--CCccceeee
Confidence 46789999884 5555 4565544333 899999999976432 1222 23333333 2 455554 33
Q ss_pred CCCCHHHHHHHHHhCcCEEEec
Q 017781 284 GVRRGTDVFKALALGASGIFIG 305 (366)
Q Consensus 284 GI~~~~dv~kalalGAd~V~ig 305 (366)
|+.|.+++..+..+|+|.+.+.
T Consensus 118 ~~~T~~~~~~~~~~g~d~v~~~ 139 (218)
T 3jr2_A 118 GNWTMQDAKAWVDLGITQAIYH 139 (218)
T ss_dssp SSCCHHHHHHHHHTTCCEEEEE
T ss_pred ecCCHHHHHHHHHcCccceeee
Confidence 5678888998888999987653
|
| >2nwr_A 2-dehydro-3-deoxyphosphooctonate aldolase; KDO, KDO8P, KDO8PS, PEP, A5P, transferase; HET: PEP; 1.50A {Aquifex aeolicus} PDB: 2nws_A* 2nx1_A* 3e0i_A* 1fwn_A* 1fwt_A* 1fws_A* 1fx6_A 1fww_A 1fxq_A* 1fy6_A* 1jcx_A* 1jcy_A* 1pck_A* 1pcw_A* 1fxp_A* 2a21_A* 2a2i_A* 1pe1_A* 3e12_A* 2nx3_A* ... | Back alignment and structure |
|---|
Probab=82.69 E-value=2.4 Score=38.93 Aligned_cols=90 Identities=22% Similarity=0.217 Sum_probs=53.3
Q ss_pred CHHHHHHHHHhcCCCEEEEecc--CHHH--------HHcCCcEEEEcCCCccCCCCCc--chHHHHHHHHHHcCCCceEE
Q 017781 213 SWKDVKWLQTITKLPILVKGVL--TAED--------VQAGAAGIIVSNHGARQLDYVP--ATIMALEEVVKATQGRIPVF 280 (366)
Q Consensus 213 ~~~~i~~lr~~~~~pv~vK~v~--~~~d--------~~aGad~I~vs~~gg~~~~~~~--~~~~~l~~i~~~~~~~i~vi 280 (366)
+.+.++++. .++.||++|..+ ++++ ...|-.-+++--.|+.. .... ..+..++.+++. . ||+
T Consensus 107 n~~ll~~~a-~~~~PV~lK~G~~~t~~e~~~Av~~i~~~GN~~i~L~~rG~~~-~y~~~~~dl~~i~~lk~~---~-pVi 180 (267)
T 2nwr_A 107 QTDLLLAAA-KTGRAVNVKKGQFLAPWDTKNVVEKLKFGGAKEIYLTERGTTF-GYNNLVVDFRSLPIMKQW---A-KVI 180 (267)
T ss_dssp CHHHHHHHH-TTTSEEEEECCTTCCGGGGHHHHHHHHHTTCSSEEEEECCEEC-SSSCEECCTTHHHHHTTT---S-EEE
T ss_pred CHHHHHHHH-cCCCcEEEeCCCCCCHHHHHHHHHHHHHcCCCeEEEEECCCCC-CCCccccCHHHHHHHHHc---C-CEE
Confidence 455677774 579999999764 6665 56786545544444421 1111 234455555442 3 999
Q ss_pred Ee---------------cCCCCH-HH-HHHHHHhCcCEEEecHHH
Q 017781 281 LD---------------GGVRRG-TD-VFKALALGASGIFIGRPV 308 (366)
Q Consensus 281 ~~---------------GGI~~~-~d-v~kalalGAd~V~igr~~ 308 (366)
+| +|-+.- .+ +..++++||++++|=+-+
T Consensus 181 vD~sH~~q~p~G~s~hs~g~~~~~~~ia~aava~Ga~G~mIE~H~ 225 (267)
T 2nwr_A 181 YDATHSVQLPGGLGDKSGGMREFIFPLIRAAVAVGCDGVFMETHP 225 (267)
T ss_dssp EETTGGGCCTTC------CCGGGHHHHHHHHHHHCCSEEEEEEES
T ss_pred EcCCcccccCCCcCcCCCCchhHHHHHHHHHHHcCCCEEEEEecC
Confidence 97 443221 23 335678999999998754
|
| >2htm_A Thiazole biosynthesis protein THIG; thiamin biosynthesis, THIG, thermus thermophilus HB8, structural genomics, NPPSFA; 2.30A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=82.67 E-value=1.6 Score=40.08 Aligned_cols=38 Identities=11% Similarity=0.247 Sum_probs=31.1
Q ss_pred CHHHHHHHHH-hcC-CCEEEEe-ccCHHH----HHcCCcEEEEcC
Q 017781 213 SWKDVKWLQT-ITK-LPILVKG-VLTAED----VQAGAAGIIVSN 250 (366)
Q Consensus 213 ~~~~i~~lr~-~~~-~pv~vK~-v~~~~d----~~aGad~I~vs~ 250 (366)
+.+.++.+++ ..+ +||++-+ +.+++| .+.|+|+|.|..
T Consensus 164 ~~~~L~~i~~~~~~~vPVI~~GGI~tpsDAa~AmeLGAdgVlVgS 208 (268)
T 2htm_A 164 TRALLELFAREKASLPPVVVDAGLGLPSHAAEVMELGLDAVLVNT 208 (268)
T ss_dssp THHHHHHHHHTTTTSSCBEEESCCCSHHHHHHHHHTTCCEEEESH
T ss_pred CHHHHHHHHHhcCCCCeEEEeCCCCCHHHHHHHHHcCCCEEEECh
Confidence 4667899998 667 9999985 578888 999999998843
|
| >3hgj_A Chromate reductase; TIM barrel, oxidoreductase; HET: FMN; 2.00A {Thermus scotoductus} SCOP: c.1.4.0 PDB: 3hf3_A* | Back alignment and structure |
|---|
Probab=82.52 E-value=13 Score=35.13 Aligned_cols=85 Identities=18% Similarity=0.185 Sum_probs=56.3
Q ss_pred ceEEEeee------cCCHHHHHHHHHHHHHcCCCEEEEecCCCCCcchhHHHhhhcCCCCccccccccccccCCCccccc
Q 017781 124 IRFFQLYV------YKDRNVVAQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLTLKNFQGLDLGKMDEAND 197 (366)
Q Consensus 124 ~~~~Qly~------~~d~~~~~~~l~ra~~~G~~ai~vtvd~p~~g~r~~d~~~~~~~p~~~~~~~~~~~~~~~~~~~~~ 197 (366)
+.++.|.. ..+.+...+++++++++|++.|.++...... ....|
T Consensus 221 pV~vRls~~~~~~~g~~~~~~~~la~~L~~~Gvd~i~vs~g~~~~---------~~~~~--------------------- 270 (349)
T 3hgj_A 221 PLFVRVSATDWGEGGWSLEDTLAFARRLKELGVDLLDCSSGGVVL---------RVRIP--------------------- 270 (349)
T ss_dssp CEEEEEESCCCSTTSCCHHHHHHHHHHHHHTTCCEEEEECCCSCS---------SSCCC---------------------
T ss_pred eEEEEeccccccCCCCCHHHHHHHHHHHHHcCCCEEEEecCCcCc---------ccccC---------------------
Confidence 56676654 2355667788888999999988776421000 00000
Q ss_pred hhhHHHhhhccCCCCCHHHHHHHHHhcCCCEEEEec-cCHHH----HHcC-CcEEEE
Q 017781 198 SGLAAYVAGQIDRSLSWKDVKWLQTITKLPILVKGV-LTAED----VQAG-AAGIIV 248 (366)
Q Consensus 198 ~~~~~~~~~~~d~~~~~~~i~~lr~~~~~pv~vK~v-~~~~d----~~aG-ad~I~v 248 (366)
..+...++.++++|+.+++||+.-|. .++++ .+.| +|.|.+
T Consensus 271 ----------~~~~~~~~~~~~ir~~~~iPVi~~Ggi~t~e~a~~~l~~G~aD~V~i 317 (349)
T 3hgj_A 271 ----------LAPGFQVPFADAVRKRVGLRTGAVGLITTPEQAETLLQAGSADLVLL 317 (349)
T ss_dssp ----------CCTTTTHHHHHHHHHHHCCEEEECSSCCCHHHHHHHHHTTSCSEEEE
T ss_pred ----------CCccccHHHHHHHHHHcCceEEEECCCCCHHHHHHHHHCCCceEEEe
Confidence 01234678899999999999988765 46776 7778 999976
|
| >1twd_A Copper homeostasis protein CUTC; TIM-like protein, structural genomics, PSI, protein structure initiative; 1.70A {Shigella flexneri} SCOP: c.1.30.1 PDB: 1x7i_A 1x8c_A | Back alignment and structure |
|---|
Probab=82.11 E-value=5.4 Score=36.33 Aligned_cols=65 Identities=26% Similarity=0.368 Sum_probs=48.2
Q ss_pred cCHHH----HHcCCcEEEEcCC---CccCCCCCcchHHHHHHHHHHcCCCceEEE-----ecCCCCH--------HHHHH
Q 017781 234 LTAED----VQAGAAGIIVSNH---GARQLDYVPATIMALEEVVKATQGRIPVFL-----DGGVRRG--------TDVFK 293 (366)
Q Consensus 234 ~~~~d----~~aGad~I~vs~~---gg~~~~~~~~~~~~l~~i~~~~~~~i~vi~-----~GGI~~~--------~dv~k 293 (366)
.+.++ .+.|||-|-+... || --|++..+..+++.+ ++||.+ .|++... .|+..
T Consensus 9 ~s~~~a~~A~~~GAdRIELc~~L~~GG-----lTPS~g~i~~~~~~~--~ipv~vMIRPR~GdF~Ys~~E~~~M~~Di~~ 81 (256)
T 1twd_A 9 YSMECALTAQQNGADRVELCAAPKEGG-----LTPSLGVLKSVRQRV--TIPVHPIIRPRGGDFCYSDGEFAAILEDVRT 81 (256)
T ss_dssp SSHHHHHHHHHTTCSEEEECBCGGGTC-----BCCCHHHHHHHHHHC--CSCEEEBCCSSSSCSCCCHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHcCCCEEEEcCCcccCC-----CCCCHHHHHHHHHHc--CCceEEEECCCCCCCcCCHHHHHHHHHHHHH
Confidence 56776 8999999997653 33 235677777888877 788876 3455444 47777
Q ss_pred HHHhCcCEEEec
Q 017781 294 ALALGASGIFIG 305 (366)
Q Consensus 294 alalGAd~V~ig 305 (366)
+..+|||+|.+|
T Consensus 82 ~~~~GadGvV~G 93 (256)
T 1twd_A 82 VRELGFPGLVTG 93 (256)
T ss_dssp HHHTTCSEEEEC
T ss_pred HHHcCCCEEEEe
Confidence 888999999999
|
| >3oa3_A Aldolase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, pathogenic fungus; 1.60A {Coccidioides immitis} | Back alignment and structure |
|---|
Probab=81.68 E-value=6.6 Score=36.39 Aligned_cols=70 Identities=13% Similarity=0.109 Sum_probs=45.6
Q ss_pred HHcCCcEEEEcCCCccCCCCC-cchHHHHHHHHHHcCCC-ceEEEecCCCCHHHHHHH----HHhCcCEEEecHHH
Q 017781 239 VQAGAAGIIVSNHGARQLDYV-PATIMALEEVVKATQGR-IPVFLDGGVRRGTDVFKA----LALGASGIFIGRPV 308 (366)
Q Consensus 239 ~~aGad~I~vs~~gg~~~~~~-~~~~~~l~~i~~~~~~~-i~vi~~GGI~~~~dv~ka----lalGAd~V~igr~~ 308 (366)
.+.|||-|.+.-.-|.-.++. ..-.+.+..+++++++. +.||..-|.-+.+++.++ ..+|||+|--.+-|
T Consensus 136 i~~GAdEIDmVINig~lk~g~~~~v~~eI~~V~~a~~~~~lKVIlEt~~Lt~eei~~A~~ia~eaGADfVKTSTGf 211 (288)
T 3oa3_A 136 MQNGASELDMVMNYPWLSEKRYTDVFQDIRAVRLAAKDAILKVILETSQLTADEIIAGCVLSSLAGADYVKTSTGF 211 (288)
T ss_dssp HHTTCSEEEEECCHHHHHTTCHHHHHHHHHHHHHHTTTSEEEEECCGGGCCHHHHHHHHHHHHHTTCSEEECCCSS
T ss_pred HHcCCCEEEEEeehhhhcCCcHHHHHHHHHHHHHHhcCCCceEEEECCCCCHHHHHHHHHHHHHcCCCEEEcCCCC
Confidence 678999999653322111111 12345566777776543 788999888888886654 34799999887644
|
| >3l5l_A Xenobiotic reductase A; TIM barrel, oxidoreductase; HET: BU3 FMN; 1.03A {Pseudomonas putida} SCOP: c.1.4.0 PDB: 3l5m_A* 3n19_B* 3n16_A* 3l68_A* 3l67_A* 3l65_A* 3l66_A* 3n14_A* 2h8z_A* 2h90_A* 2h8x_A* | Back alignment and structure |
|---|
Probab=81.34 E-value=10 Score=36.08 Aligned_cols=85 Identities=16% Similarity=0.130 Sum_probs=55.3
Q ss_pred ceEEEeeec-------CCHHHHHHHHHHHHHcCCCEEEEecCCCCCcchhHHHhhhcCCCCccccccccccccCCCcccc
Q 017781 124 IRFFQLYVY-------KDRNVVAQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLTLKNFQGLDLGKMDEAN 196 (366)
Q Consensus 124 ~~~~Qly~~-------~d~~~~~~~l~ra~~~G~~ai~vtvd~p~~g~r~~d~~~~~~~p~~~~~~~~~~~~~~~~~~~~ 196 (366)
+.++.|... .+.+...+++++++++|++.|.++....... ...|
T Consensus 227 pV~vRis~~~~~~~G~~~~~~~~~la~~L~~~Gvd~i~vs~g~~~~~---------~~~~-------------------- 277 (363)
T 3l5l_A 227 PLTARFGVLEYDGRDEQTLEESIELARRFKAGGLDLLSVSVGFTIPD---------TNIP-------------------- 277 (363)
T ss_dssp CEEEEEEEECSSSCHHHHHHHHHHHHHHHHHTTCCEEEEEECCCSSC---------CCCC--------------------
T ss_pred eEEEEecchhcCCCCCCCHHHHHHHHHHHHHcCCCEEEEecCccccc---------cccC--------------------
Confidence 566766542 2345566778888999999988764321000 0000
Q ss_pred chhhHHHhhhccCCCCCHHHHHHHHHhcCCCEEEEecc-CHHH----HHcC-CcEEEE
Q 017781 197 DSGLAAYVAGQIDRSLSWKDVKWLQTITKLPILVKGVL-TAED----VQAG-AAGIIV 248 (366)
Q Consensus 197 ~~~~~~~~~~~~d~~~~~~~i~~lr~~~~~pv~vK~v~-~~~d----~~aG-ad~I~v 248 (366)
..+...++.++++|+.+++||+.-|.. ++++ .+.| +|.|.+
T Consensus 278 -----------~~~~~~~~~~~~ir~~~~iPVi~~GgI~s~e~a~~~l~~G~aD~V~i 324 (363)
T 3l5l_A 278 -----------WGPAFMGPIAERVRREAKLPVTSAWGFGTPQLAEAALQANQLDLVSV 324 (363)
T ss_dssp -----------CCTTTTHHHHHHHHHHHTCCEEECSSTTSHHHHHHHHHTTSCSEEEC
T ss_pred -----------CCcchhHHHHHHHHHHcCCcEEEeCCCCCHHHHHHHHHCCCccEEEe
Confidence 012346778899999999999888754 6766 6777 999965
|
| >3ovp_A Ribulose-phosphate 3-epimerase; iron binding, isomerase; HET: XPE; 1.70A {Homo sapiens} SCOP: c.1.2.0 PDB: 3ovq_A* 3ovr_A* 3qc3_A | Back alignment and structure |
|---|
Probab=81.22 E-value=7.7 Score=34.50 Aligned_cols=37 Identities=32% Similarity=0.461 Sum_probs=29.1
Q ss_pred CHHHHHHHHHhc-CCCEEEEeccCHHH----HHcCCcEEEEc
Q 017781 213 SWKDVKWLQTIT-KLPILVKGVLTAED----VQAGAAGIIVS 249 (366)
Q Consensus 213 ~~~~i~~lr~~~-~~pv~vK~v~~~~d----~~aGad~I~vs 249 (366)
.++.++++|+.. +.|+.|-|..+++. .++|||.+++.
T Consensus 156 ~l~ki~~lr~~~~~~~I~VdGGI~~~t~~~~~~aGAd~~VvG 197 (228)
T 3ovp_A 156 MMPKVHWLRTQFPSLDIEVDGGVGPDTVHKCAEAGANMIVSG 197 (228)
T ss_dssp GHHHHHHHHHHCTTCEEEEESSCSTTTHHHHHHHTCCEEEES
T ss_pred HHHHHHHHHHhcCCCCEEEeCCcCHHHHHHHHHcCCCEEEEe
Confidence 466789999876 57888887766554 89999999874
|
| >1o5k_A DHDPS, dihydrodipicolinate synthase; TM1521, structural genomics, J protein structure initiative, joint center for structural G lyase; HET: MCL; 1.80A {Thermotoga maritima} SCOP: c.1.10.1 PDB: 3pb2_A 3pb0_A | Back alignment and structure |
|---|
Probab=81.15 E-value=34 Score=31.58 Aligned_cols=83 Identities=14% Similarity=0.072 Sum_probs=50.2
Q ss_pred CceEecccccccccCChhhHHHHHHHHHcCCcee--cC---CCCCCCHHHHhc-------c-CC-CceEEEeeecCCHHH
Q 017781 72 MPIMIAPTAMQKMAHPEGEYATARAASAAGTIMT--LS---SWSTSSVEEVAS-------T-GP-GIRFFQLYVYKDRNV 137 (366)
Q Consensus 72 ~Pi~iApm~~~~l~~~~~e~~la~aa~~~G~~~~--vs---~~~~~~~e~i~~-------~-~~-~~~~~Qly~~~d~~~ 137 (366)
.|.++.|+. .+-...++-..+++-.-+.|+... ++ +..+.+.+|-.+ . .+ .|.+...- ..+.+.
T Consensus 18 ~~a~vTPf~-dg~iD~~~l~~lv~~li~~Gv~gl~v~GtTGE~~~Ls~eEr~~vi~~~~~~~~grvpViaGvg-~~st~~ 95 (306)
T 1o5k_A 18 GTAIVTPFK-NGELDLESYERLVRYQLENGVNALIVLGTTGESPTVNEDEREKLVSRTLEIVDGKIPVIVGAG-TNSTEK 95 (306)
T ss_dssp EEECCCCEE-TTEECHHHHHHHHHHHHHTTCCEEEESSGGGTGGGCCHHHHHHHHHHHHHHHTTSSCEEEECC-CSCHHH
T ss_pred eeeeecCcC-CCCcCHHHHHHHHHHHHHcCCCEEEeCccccchhhCCHHHHHHHHHHHHHHhCCCCeEEEcCC-CccHHH
Confidence 344556664 433333444567777777887554 23 344567665432 1 22 35566654 345666
Q ss_pred HHHHHHHHHHcCCCEEEEe
Q 017781 138 VAQLVRRAERAGFKAIALT 156 (366)
Q Consensus 138 ~~~~l~ra~~~G~~ai~vt 156 (366)
..++.+.|+++|++++.+.
T Consensus 96 ai~la~~A~~~Gadavlv~ 114 (306)
T 1o5k_A 96 TLKLVKQAEKLGANGVLVV 114 (306)
T ss_dssp HHHHHHHHHHHTCSEEEEE
T ss_pred HHHHHHHHHhcCCCEEEEC
Confidence 7788899999999998874
|
| >4a35_A Mitochondrial enolase superfamily member 1; isomerase; 1.74A {Homo sapiens} | Back alignment and structure |
|---|
Probab=80.94 E-value=16 Score=35.75 Aligned_cols=45 Identities=13% Similarity=-0.016 Sum_probs=36.2
Q ss_pred chHHHHHHHHHHcC-CCceEEEecCCCCHHHHHHHHHhC-cCEEEec
Q 017781 261 ATIMALEEVVKATQ-GRIPVFLDGGVRRGTDVFKALALG-ASGIFIG 305 (366)
Q Consensus 261 ~~~~~l~~i~~~~~-~~i~vi~~GGI~~~~dv~kalalG-Ad~V~ig 305 (366)
..++.+.++++.+. ..+||.++--+.+..|+.+++..| +|.|++-
T Consensus 283 ~d~~~~~~l~~~l~~~~iPIa~gE~~~~~~~~~~~l~~~a~div~~d 329 (441)
T 4a35_A 283 DDILGHATISKALVPLGIGIATGEQCHNRVIFKQLLQAKALQFLQID 329 (441)
T ss_dssp TCHHHHHHHHHHHGGGTCEEEECTTCCSHHHHHHHHHTTCCSEECCC
T ss_pred ccHHHHHHHHHhccCCCCCEEeCCccccHHHHHHHHHcCCCCEEEEC
Confidence 35677788887621 179999999999999999999987 7888875
|
| >3a5f_A Dihydrodipicolinate synthase; TIM barrel, enzyme, amino-acid biosynthesis, cytoplasm, diaminopimelate biosynthesis, lyase; HET: KPI; 1.19A {Clostridium botulinum A} PDB: 3bi8_A* 3ird_A* | Back alignment and structure |
|---|
Probab=80.92 E-value=33 Score=31.34 Aligned_cols=83 Identities=10% Similarity=-0.037 Sum_probs=51.7
Q ss_pred CceEecccccccccCChhhHHHHHHHHHcCCceec--C---CCCCCCHHHHhc-------c-CC-CceEEEeeecCCHHH
Q 017781 72 MPIMIAPTAMQKMAHPEGEYATARAASAAGTIMTL--S---SWSTSSVEEVAS-------T-GP-GIRFFQLYVYKDRNV 137 (366)
Q Consensus 72 ~Pi~iApm~~~~l~~~~~e~~la~aa~~~G~~~~v--s---~~~~~~~e~i~~-------~-~~-~~~~~Qly~~~d~~~ 137 (366)
.|.++.|+.-.+ ...++-..+++-.-+.|+...+ + +..+.+.+|-.+ . .. .|.+...- ..+.+.
T Consensus 7 ~~a~vTPf~~dg-iD~~~l~~lv~~li~~Gv~gl~~~GttGE~~~Ls~~Er~~v~~~~~~~~~gr~pvi~Gvg-~~~t~~ 84 (291)
T 3a5f_A 7 GVAIITPFTNTG-VDFDKLSELIEWHIKSKTDAIIVCGTTGEATTMTETERKETIKFVIDKVNKRIPVIAGTG-SNNTAA 84 (291)
T ss_dssp EEECCCCBCSSS-BCHHHHHHHHHHHHHTTCCEEEESSGGGTGGGSCHHHHHHHHHHHHHHHTTSSCEEEECC-CSSHHH
T ss_pred eeeeEcCcCCCC-cCHHHHHHHHHHHHHcCCCEEEECccccChhhCCHHHHHHHHHHHHHHhCCCCcEEEeCC-cccHHH
Confidence 345567774334 4455555777777778876543 3 344566665432 1 22 35666654 345566
Q ss_pred HHHHHHHHHHcCCCEEEEe
Q 017781 138 VAQLVRRAERAGFKAIALT 156 (366)
Q Consensus 138 ~~~~l~ra~~~G~~ai~vt 156 (366)
..++.+.++++|++++.+.
T Consensus 85 ai~la~~a~~~Gadavlv~ 103 (291)
T 3a5f_A 85 SIAMSKWAESIGVDGLLVI 103 (291)
T ss_dssp HHHHHHHHHHTTCSEEEEE
T ss_pred HHHHHHHHHhcCCCEEEEc
Confidence 7788899999999998874
|
| >3eoo_A Methylisocitrate lyase; seattle structural genomics center for infectious disease, ssgcid; 2.90A {Burkholderia pseudomallei 1655} SCOP: c.1.12.7 | Back alignment and structure |
|---|
Probab=80.89 E-value=12 Score=34.78 Aligned_cols=87 Identities=20% Similarity=0.282 Sum_probs=55.4
Q ss_pred HHHHHHHhcCCCEEEEeccCHHH----HHcCCcEEEEcCCC-c-c---CCCCCcchHH----HHHHHHHHcCCCceEEEe
Q 017781 216 DVKWLQTITKLPILVKGVLTAED----VQAGAAGIIVSNHG-A-R---QLDYVPATIM----ALEEVVKATQGRIPVFLD 282 (366)
Q Consensus 216 ~i~~lr~~~~~pv~vK~v~~~~d----~~aGad~I~vs~~g-g-~---~~~~~~~~~~----~l~~i~~~~~~~i~vi~~ 282 (366)
.++.+++. +.|+++=++.+.-. .++|+|+|.+++.+ + . ..|.++-+++ .+..|.+.. ++||++|
T Consensus 13 ~lr~l~~~-~~~i~~~~a~D~~sA~l~e~aGf~ai~vs~~s~a~~~~G~pD~~~vt~~em~~~~~~I~r~~--~~PviaD 89 (298)
T 3eoo_A 13 KFRAAVAA-EQPLQVVGAITAYAAKMAEAVGFKAVYLSGGGVAANSLGIPDLGISTMDDVLVDANRITNAT--NLPLLVD 89 (298)
T ss_dssp HHHHHHHH-SSSEEEEECSSHHHHHHHHHHTCSCEEECHHHHHHHTTCCCSSSCCCHHHHHHHHHHHHHHC--CSCEEEE
T ss_pred HHHHHHhC-CCcEEEecCCCHHHHHHHHHcCCCEEEECcHHHHHHhcCCCCCCCCCHHHHHHHHHHHHhhc--CCeEEEE
Confidence 35555543 56888878766654 88999999998722 1 0 2344554443 344455555 7999998
Q ss_pred c--CCCCHHHHH----HHHHhCcCEEEec
Q 017781 283 G--GVRRGTDVF----KALALGASGIFIG 305 (366)
Q Consensus 283 G--GI~~~~dv~----kalalGAd~V~ig 305 (366)
. |..++.++. +.+..||.+|.|-
T Consensus 90 ~d~Gyg~~~~v~~~v~~l~~aGaagv~iE 118 (298)
T 3eoo_A 90 IDTGWGGAFNIARTIRSFIKAGVGAVHLE 118 (298)
T ss_dssp CTTCSSSHHHHHHHHHHHHHTTCSEEEEE
T ss_pred CCCCCCCHHHHHHHHHHHHHhCCeEEEEC
Confidence 7 444555554 3345899999764
|
| >4dxk_A Mandelate racemase / muconate lactonizing enzyme protein; enolase, mandelate racemase subgroup, enzyme function initia EFI; 1.25A {Agrobacterium tumefaciens} PDB: 4dx3_A 2pod_A | Back alignment and structure |
|---|
Probab=80.80 E-value=3.3 Score=40.14 Aligned_cols=83 Identities=10% Similarity=0.019 Sum_probs=62.3
Q ss_pred CHHHHHHHHHhc--CCCEEEEec--cCHHH--------HHcCCcEEEEcCCCccCCCCCcchHHHHHHHHHHcCCCceEE
Q 017781 213 SWKDVKWLQTIT--KLPILVKGV--LTAED--------VQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVF 280 (366)
Q Consensus 213 ~~~~i~~lr~~~--~~pv~vK~v--~~~~d--------~~aGad~I~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~i~vi 280 (366)
+.+.++.+|+.+ +.+|.+-.- .+.++ .+.|+++|-- ...+..++.+.++++.. .+||+
T Consensus 196 d~~~v~avR~a~g~~~~l~vDaN~~~~~~~A~~~~~~L~~~~i~~iEe--------P~~~~~~~~~~~l~~~~--~iPIa 265 (400)
T 4dxk_A 196 ALEPFEKIRKAVGDKMDIMVEFHSMWQLLPAMQIAKALTPYQTFWHED--------PIKMDSLSSLTRYAAVS--PAPIS 265 (400)
T ss_dssp HHHHHHHHHHHHGGGSEEEEECTTCBCHHHHHHHHHHTGGGCCSEEEC--------CBCTTSGGGHHHHHHHC--SSCEE
T ss_pred HHHHHHHHHHHcCCCceEEEECCCCCCHHHHHHHHHHHhhcCCCEEEc--------CCCcccHHHHHHHHHhC--CCCEE
Confidence 466789999987 478888743 45555 5678887751 01122455677788777 79999
Q ss_pred EecCCCCHHHHHHHHHhC-cCEEEec
Q 017781 281 LDGGVRRGTDVFKALALG-ASGIFIG 305 (366)
Q Consensus 281 ~~GGI~~~~dv~kalalG-Ad~V~ig 305 (366)
++..+.+..|+.+++..| +|.|++-
T Consensus 266 ~dE~~~~~~~~~~~l~~~a~d~v~~d 291 (400)
T 4dxk_A 266 ASETLGSRWAFRDLLETGAAGVVMLD 291 (400)
T ss_dssp ECTTCCHHHHHHHHHHTTCCCEEEEC
T ss_pred ecCCcCCHHHHHHHHHcCCCCEEEeC
Confidence 999999999999999998 7999985
|
| >4a29_A Engineered retro-aldol enzyme RA95.0; de novo protein, engineered enzyme, retro-aldolase, directed evolution; HET: 3NK MLT; 1.10A {Synthetic construct} PDB: 4a2s_A* 4a2r_A* 3tc7_A 3tc6_A 3nl8_A* 3nxf_A* 3o6y_X 3ud6_A* 1igs_A 1juk_A 1jul_A* 3hoj_A 1a53_A* 1lbf_A* 1lbl_A* 3nyz_A 3nz1_A* 3uy7_A 3uxd_A* 3uxa_A* ... | Back alignment and structure |
|---|
Probab=80.40 E-value=4.3 Score=37.00 Aligned_cols=62 Identities=16% Similarity=0.351 Sum_probs=47.4
Q ss_pred HHcCCcEEEEcCCCccCCCCCcchHHHHHHHHHHcCCCceEEEecCCCCHHHHHHHHHhCcCEEEecH
Q 017781 239 VQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFIGR 306 (366)
Q Consensus 239 ~~aGad~I~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~i~vi~~GGI~~~~dv~kalalGAd~V~igr 306 (366)
.++||++|.|-.-.- +-..+.+.|..+++.+ ++||+--==|-++.++.+|-++|||+|.+=-
T Consensus 73 ~~~GA~aiSVLTd~~----~F~Gs~~~L~~vr~~v--~lPvLrKDFiid~yQI~eAr~~GADaILLI~ 134 (258)
T 4a29_A 73 MERYAVGLSITTEEK----YFNGSYETLRKIASSV--SIPILMSDFIVKESQIDDAYNLGADTVLLIV 134 (258)
T ss_dssp HTTTCSEEEEECCST----TTCCCHHHHHHHHTTC--SSCEEEESCCCSHHHHHHHHHHTCSEEEEEG
T ss_pred HhCCCeEEEEeCCCC----CCCCCHHHHHHHHHhc--CCCEeeccccccHHHHHHHHHcCCCeeehHH
Confidence 678999998754210 1113567788888777 8999887778999999999999999997643
|
| >1tqx_A D-ribulose-5-phosphate 3-epimerase, putative; structural genomics, protein structure initiative, PSI; 2.00A {Plasmodium falciparum} SCOP: c.1.2.2 | Back alignment and structure |
|---|
Probab=80.09 E-value=7.4 Score=34.68 Aligned_cols=38 Identities=29% Similarity=0.298 Sum_probs=31.7
Q ss_pred CCHHHHHHHHHhc-CCCEEEEeccCHHH----HHcCCcEEEEc
Q 017781 212 LSWKDVKWLQTIT-KLPILVKGVLTAED----VQAGAAGIIVS 249 (366)
Q Consensus 212 ~~~~~i~~lr~~~-~~pv~vK~v~~~~d----~~aGad~I~vs 249 (366)
..++.|+++|+.. +.+|.|=|..+.++ .++|||.+++.
T Consensus 159 ~~l~ki~~lr~~~~~~~I~VdGGI~~~ti~~~~~aGAd~~V~G 201 (227)
T 1tqx_A 159 DMMGKVSFLRKKYKNLNIQVDGGLNIETTEISASHGANIIVAG 201 (227)
T ss_dssp GGHHHHHHHHHHCTTCEEEEESSCCHHHHHHHHHHTCCEEEES
T ss_pred HHHHHHHHHHHhccCCeEEEECCCCHHHHHHHHHcCCCEEEEe
Confidence 4677889999877 68888888888876 89999999874
|
| >3g8r_A Probable spore coat polysaccharide biosynthesis P; structural genomics, protein structure initiative; 2.49A {Chromobacterium violaceum atcc 12472} | Back alignment and structure |
|---|
Probab=80.04 E-value=15 Score=35.05 Aligned_cols=81 Identities=16% Similarity=0.138 Sum_probs=54.9
Q ss_pred CCHHHHHHH---HHhcCCCEEEEeccCHHH----HHcCCcEEEEcCCCccCCCCCcchHHHHHHHHHHcCCCceEEEecC
Q 017781 212 LSWKDVKWL---QTITKLPILVKGVLTAED----VQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGG 284 (366)
Q Consensus 212 ~~~~~i~~l---r~~~~~pv~vK~v~~~~d----~~aGad~I~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~i~vi~~GG 284 (366)
+.|+..+.| ++..+++++ =.+++.++ .+.|+|.+.|... ....+..|..+.+. ..|||.+-|
T Consensus 75 l~~e~~~~L~~~~~~~Gi~~~-st~fD~~svd~l~~~~v~~~KI~S~-------~~~N~pLL~~va~~---gKPviLstG 143 (350)
T 3g8r_A 75 LQPEQMQKLVAEMKANGFKAI-CTPFDEESVDLIEAHGIEIIKIASC-------SFTDWPLLERIARS---DKPVVASTA 143 (350)
T ss_dssp CCHHHHHHHHHHHHHTTCEEE-EEECSHHHHHHHHHTTCCEEEECSS-------STTCHHHHHHHHTS---CSCEEEECT
T ss_pred CCHHHHHHHHHHHHHcCCcEE-eccCCHHHHHHHHHcCCCEEEECcc-------cccCHHHHHHHHhh---CCcEEEECC
Confidence 556554444 455577754 34555554 7899999998442 23456677777642 689999999
Q ss_pred CCCHHHHHHHHH----hCcCEEE
Q 017781 285 VRRGTDVFKALA----LGASGIF 303 (366)
Q Consensus 285 I~~~~dv~kala----lGAd~V~ 303 (366)
..|-+++..|+. .|-+.+.
T Consensus 144 mstl~Ei~~Ave~i~~~g~~viL 166 (350)
T 3g8r_A 144 GARREDIDKVVSFMLHRGKDLTI 166 (350)
T ss_dssp TCCHHHHHHHHHHHHTTTCCEEE
T ss_pred CCCHHHHHHHHHHHHHcCCCEEE
Confidence 999999988865 3655333
|
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST
Original result of RPS-BLAST against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
E-value |
| 366 | ||||
| d1goxa_ | 359 | c.1.4.1 (A:) Glycolate oxidase {Spinach (Spinacia | 1e-120 | |
| d1p4ca_ | 353 | c.1.4.1 (A:) Membrane-associated (S)-mandelate deh | 1e-103 | |
| d1kbia1 | 414 | c.1.4.1 (A:98-511) Flavocytochrome b2, C-terminal | 1e-100 | |
| d1tb3a1 | 349 | c.1.4.1 (A:1-349) Hydroxyacid oxidase {Rat (Rattus | 1e-100 | |
| d1p0ka_ | 329 | c.1.4.1 (A:) Isopentenyl-diphosphate delta-isomera | 5e-59 | |
| d1vcfa1 | 310 | c.1.4.1 (A:23-332) Isopentenyl-diphosphate delta-i | 1e-54 | |
| d1y0ea_ | 222 | c.1.2.5 (A:) Putative N-acetylmannosamine-6-phosph | 7e-14 | |
| d1yxya1 | 230 | c.1.2.5 (A:4-233) Putative N-acetylmannosamine-6-p | 5e-13 | |
| d1ea0a2 | 771 | c.1.4.1 (A:423-1193) Alpha subunit of glutamate sy | 4e-08 | |
| d1ofda2 | 809 | c.1.4.1 (A:431-1239) Alpha subunit of glutamate sy | 8e-08 | |
| d1juba_ | 311 | c.1.4.1 (A:) Dihydroorotate dehydrogenase {Lactoco | 7e-05 | |
| d1gtea2 | 312 | c.1.4.1 (A:533-844) Dihydropyrimidine dehydrogenas | 1e-04 | |
| d1tv5a1 | 409 | c.1.4.1 (A:158-566) Dihydroorotate dehydrogenase { | 3e-04 | |
| d1d3ga_ | 367 | c.1.4.1 (A:) Dihydroorotate dehydrogenase {Human ( | 0.002 |
| >d1goxa_ c.1.4.1 (A:) Glycolate oxidase {Spinach (Spinacia oleracea) [TaxId: 3562]} Length = 359 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: FMN-linked oxidoreductases family: FMN-linked oxidoreductases domain: Glycolate oxidase species: Spinach (Spinacia oleracea) [TaxId: 3562]
Score = 350 bits (899), Expect = e-120
Identities = 319/358 (89%), Positives = 340/358 (94%), Gaps = 4/358 (1%)
Query: 3 EITNVMEYEAIAKEKLPKMVFDYYASGAEDQWTLQENRNAFSRILFRPRILIDVSKIDMN 62
EITNV EYEAIAK+KLPKMV+DYYASGAEDQWTL ENRNAFSRILFRPRILIDV+ IDM
Sbjct: 2 EITNVNEYEAIAKQKLPKMVYDYYASGAEDQWTLAENRNAFSRILFRPRILIDVTNIDMT 61
Query: 63 TTVLGFKISMPIMIAPTAMQKMAHPEGEYATARAASAAGTIMTLSSWSTSSVEEVASTGP 122
TT+LGFKISMPIMIAPTAMQKMAHPEGEYATARAASAAGTIMTLSSW+TSSVEEVASTGP
Sbjct: 62 TTILGFKISMPIMIAPTAMQKMAHPEGEYATARAASAAGTIMTLSSWATSSVEEVASTGP 121
Query: 123 GIRFFQLYVYKDRNVVAQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLTLK 182
GIRFFQLYVYKDRNVVAQLVRRAERAGFKAIALTVDTPRLGRREADIKNRF LPPFLTLK
Sbjct: 122 GIRFFQLYVYKDRNVVAQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFVLPPFLTLK 181
Query: 183 NFQGLDLGKMDEANDSGLAAYVAGQIDRSLSWKDVKWLQTITKLPILVKGVLTAED---- 238
NF+G+DLGKMD+ANDSGL++YVAGQIDRSLSWKDV WLQTIT LPILVKGV+TAED
Sbjct: 182 NFEGIDLGKMDKANDSGLSSYVAGQIDRSLSWKDVAWLQTITSLPILVKGVITAEDARLA 241
Query: 239 VQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALG 298
VQ GAAGIIVSNHGARQLDYVPATIMALEEVVKA QGRIPVFLDGGVRRGTDVFKALALG
Sbjct: 242 VQHGAAGIIVSNHGARQLDYVPATIMALEEVVKAAQGRIPVFLDGGVRRGTDVFKALALG 301
Query: 299 ASGIFIGRPVVYSLAAEGEKGVRRVLEMLREEFELAMALSGCRSLKEITRDHIVTEWD 356
A+G+FIGRPVV+SLAAEGE GV++VL+M+R+EFEL MALSGCRSLKEI+R HI +WD
Sbjct: 302 AAGVFIGRPVVFSLAAEGEAGVKKVLQMMRDEFELTMALSGCRSLKEISRSHIAADWD 359
|
| >d1p4ca_ c.1.4.1 (A:) Membrane-associated (S)-mandelate dehydrogenase {Pseudomonas putida [TaxId: 303]} Length = 353 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: FMN-linked oxidoreductases family: FMN-linked oxidoreductases domain: Membrane-associated (S)-mandelate dehydrogenase species: Pseudomonas putida [TaxId: 303]
Score = 306 bits (785), Expect = e-103
Identities = 146/355 (41%), Positives = 221/355 (62%), Gaps = 7/355 (1%)
Query: 4 ITNVMEYEAIAKEKLPKMVFDYYASGAEDQWTLQENRNAFSRILFRPRILIDVSKIDMNT 63
+ NV +Y +A+++LPKMV+DY GAED++ ++ NR+ F + F+P+ L+DVS+ +
Sbjct: 2 LFNVEDYRKLAQKRLPKMVYDYLEGGAEDEYGVKHNRDVFQQWRFKPKRLVDVSRRSLQA 61
Query: 64 TVLGFKISMPIMIAPTAMQKMAHPEGEYATARAASAAGTIMTLSSWSTSSVEEVASTGPG 123
VLG + SMP++I PT + P+G+ A ARAA+ AG LS+ S S+E++A G
Sbjct: 62 EVLGKRQSMPLLIGPTGLNGALWPKGDLALARAATKAGIPFVLSTASNMSIEDLARQCDG 121
Query: 124 IRFFQLYVYKDRNVVAQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLTLKN 183
+FQ R + +V +A G+ + LT D G RE D+ NRF +PPFLTLKN
Sbjct: 122 DLWFQ-LYVIHREIAQGMVLKALHTGYTTLVLTTDVAVNGYRERDLHNRFKIPPFLTLKN 180
Query: 184 FQGLDLGKMDEANDSGLAAYVAGQIDRSLSWKDVKWLQTITKLPILVKGVLTAED----V 239
F+G+DLGKMD+AN AA ++ Q+D S +W+ ++WL+ + +LVKG+L+AED +
Sbjct: 181 FEGIDLGKMDKANLEMQAALMSRQMDASFNWEALRWLRDLWPHKLLVKGLLSAEDADRCI 240
Query: 240 QAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGA 299
GA G+I+SNHG RQLD + + L + V + PV +D G RRG+D+ KALALGA
Sbjct: 241 AEGADGVILSNHGGRQLDCAISPMEVLAQSVA--KTGKPVLIDSGFRRGSDIVKALALGA 298
Query: 300 SGIFIGRPVVYSLAAEGEKGVRRVLEMLREEFELAMALSGCRSLKEITRDHIVTE 354
+ +GR +Y LAA GE GV VL +L+ + + +A GC + ++ D++ E
Sbjct: 299 EAVLLGRATLYGLAARGETGVDEVLTLLKADIDRTLAQIGCPDITSLSPDYLQNE 353
|
| >d1kbia1 c.1.4.1 (A:98-511) Flavocytochrome b2, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 414 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: FMN-linked oxidoreductases family: FMN-linked oxidoreductases domain: Flavocytochrome b2, C-terminal domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 301 bits (772), Expect = e-100
Identities = 137/379 (36%), Positives = 214/379 (56%), Gaps = 21/379 (5%)
Query: 1 MGEITNVMEYEAIAKEKLPKMVFDYYASGAEDQWTLQENRNAFSRILFRPRILIDVSKID 60
+ I N+ ++E +A + L K + YY+SGA D+ T +EN NA+ RI F+P+IL+DV K+D
Sbjct: 22 LDNIINLYDFEYLASQTLTKQAWAYYSSGANDEVTHRENHNAYHRIFFKPKILVDVRKVD 81
Query: 61 MNTTVLGFKISMPIMIAPTAMQKMAHPEGE------YATARAASAAGTIMTLSSWSTSSV 114
++T +LG + +P ++ TA+ K+ +P I TL+S S +
Sbjct: 82 ISTDMLGSHVDVPFYVSATALCKLGNPLEGEKDVARGCGQGVTKVPQMISTLASCSPEEI 141
Query: 115 EEVASTGPGIRFFQLYVYKDRNVVAQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFT 174
E A + I+++QLYV DR + LV+ E+ G KA+ +TVD P LG+RE D+K +F+
Sbjct: 142 IEAAPSDKQIQWYQLYVNSDRKITDDLVKNVEKLGVKALFVTVDAPSLGQREKDMKLKFS 201
Query: 175 LPPFLTLKNFQGLDLGKMDEANDSGLAAYVAGQIDRSLSWKDVKWLQTITKLPILVKGVL 234
K + G + ++ ID SL+WKD++ L+ TKLPI++KGV
Sbjct: 202 NTKAGPKAMK------KTNVEESQGASRALSKFIDPSLTWKDIEELKKKTKLPIVIKGVQ 255
Query: 235 TA----EDVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQ-----GRIPVFLDGGV 285
+ + G +G+++SNHG RQLD+ A I L E + + ++ VF+DGGV
Sbjct: 256 RTEDVIKAAEIGVSGVVLSNHGGRQLDFSRAPIEVLAETMPILEQRNLKDKLEVFVDGGV 315
Query: 286 RRGTDVFKALALGASGIFIGRPVVYSLAAEGEKGVRRVLEMLREEFELAMALSGCRSLKE 345
RRGTDV KAL LGA G+ +GRP +Y+ + G GV + +E+LR+E E++M L G S+ E
Sbjct: 316 RRGTDVLKALCLGAKGVGLGRPFLYANSCYGRNGVEKAIEILRDEIEMSMRLLGVTSIAE 375
Query: 346 ITRDHIVTEWDASLPRPVP 364
+ D + + VP
Sbjct: 376 LKPDLLDLSTLKARTVGVP 394
|
| >d1tb3a1 c.1.4.1 (A:1-349) Hydroxyacid oxidase {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 349 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: FMN-linked oxidoreductases family: FMN-linked oxidoreductases domain: Hydroxyacid oxidase species: Rat (Rattus norvegicus) [TaxId: 10116]
Score = 299 bits (765), Expect = e-100
Identities = 154/353 (43%), Positives = 214/353 (60%), Gaps = 12/353 (3%)
Query: 4 ITNVMEYEAIAKEKLPKMVFDYYASGAEDQWTLQENRNAFSRILFRPRILIDVSKIDMNT 63
+ + +++A A+++L K +D+ A+D T EN AF RI RPR L D+SK+D T
Sbjct: 2 LVCLADFKAHAQKQLSKTSWDFIEGEADDGITYSENIAAFKRIRLRPRYLRDMSKVDTRT 61
Query: 64 TVLGFKISMPIMIAPTAMQKMAHPEGE-YATARAASAAGTIMTLSSWSTSSVEEVASTGP 122
T+ G +IS PI I+PTA +A P+GE A A + S S S + VA+
Sbjct: 62 TIQGQEISAPICISPTAFHSIAWPDGEKSTARAAQEANICYVISSYASYSLEDIVAAAPE 121
Query: 123 GIRFFQLYVYKDRNVVAQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLTLK 182
G R+FQLY+ D + Q+V+RAE GFKA+ +T+DTP LG R D +N+ L + LK
Sbjct: 122 GFRWFQLYMKSDWDFNKQMVQRAEALGFKALVITIDTPVLGNRRRDKRNQLNLEANILLK 181
Query: 183 NFQGLDLGKMDEANDSGLAAYVAGQIDRSLSWKDVKWLQTITKLPILVKGVLTAED---- 238
+ + L K + S W D+ LQ+IT+LPI++KG+LT ED
Sbjct: 182 DLRALKEEKP-------TQSVPVSFPKASFCWNDLSLLQSITRLPIILKGILTKEDAELA 234
Query: 239 VQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALG 298
++ GI+VSNHG RQLD V A+I AL EVV A +G+I V++DGGVR GTDV KALALG
Sbjct: 235 MKHNVQGIVVSNHGGRQLDEVSASIDALREVVAAVKGKIEVYMDGGVRTGTDVLKALALG 294
Query: 299 ASGIFIGRPVVYSLAAEGEKGVRRVLEMLREEFELAMALSGCRSLKEITRDHI 351
A IF+GRP+++ LA +GE GV+ VL++L E M LSGC+S+ EI+ D I
Sbjct: 295 ARCIFLGRPILWGLACKGEDGVKEVLDILTAELHRCMTLSGCQSVAEISPDLI 347
|
| >d1p0ka_ c.1.4.1 (A:) Isopentenyl-diphosphate delta-isomerase {Bacillus subtilis [TaxId: 1423]} Length = 329 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: FMN-linked oxidoreductases family: FMN-linked oxidoreductases domain: Isopentenyl-diphosphate delta-isomerase species: Bacillus subtilis [TaxId: 1423]
Score = 191 bits (487), Expect = 5e-59
Identities = 59/349 (16%), Positives = 117/349 (33%), Gaps = 71/349 (20%)
Query: 41 NAFSRILFRPRIL--IDVSKIDMNTTVLGFKISMPIMIAP-TAMQKMAHPEGEYATARAA 97
I F L + + ++D++T + S PI I T E + ARAA
Sbjct: 3 TGLDDITFVHVSLPDLALEQVDISTKIGELSSSSPIFINAMTGGGGKLTYEINKSLARAA 62
Query: 98 SAAGTIMTLSSWSTSSVEEVASTGPGI------RFFQLYVYKDRNVVAQLVRRAERAGFK 151
S AG + + S ++ + I AQ E G
Sbjct: 63 SQAGIPLAVGSQMSALKDPSERLSYEIVRKENPNGLIFANLGSEATAAQAKEAVEMIGAN 122
Query: 152 AIALTVDTPRLGRREADIKNRFTLPPFLTLKNFQGLDLGKMDEANDSGLAAYVAGQIDRS 211
A+ + ++ + ++
Sbjct: 123 ALQIHLNVIQEIVMPEGDRSFSG------------------------------------- 145
Query: 212 LSWKDVKWLQTITKLPILVKGVLTAED-------VQAGAAGIIVSNHGARQLDYVPAT-- 262
+ K ++ + + +P++VK V +AGAA + + +G +
Sbjct: 146 -ALKRIEQICSRVSVPVIVKEVGFGMSKASAGKLYEAGAAAVDIGGYGGTNFSKIENLRR 204
Query: 263 --------------IMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFIGRPV 308
+L E+ + GG++ DV KA+ALGAS +
Sbjct: 205 QRQISFFNSWGISTAASLAEIRSEF-PASTMIASGGLQDALDVAKAIALGASCTGMAGHF 263
Query: 309 VYSLAAEGEKGVRRVLEMLREEFELAMALSGCRSLKEITRDHIVTEWDA 357
+ +L GE+G+ ++++ EE +L M + G R++ ++ + +V + +
Sbjct: 264 LKALTDSGEEGLLEEIQLILEELKLIMTVLGARTIADLQKAPLVIKGET 312
|
| >d1vcfa1 c.1.4.1 (A:23-332) Isopentenyl-diphosphate delta-isomerase {Thermus thermophilus [TaxId: 274]} Length = 310 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: FMN-linked oxidoreductases family: FMN-linked oxidoreductases domain: Isopentenyl-diphosphate delta-isomerase species: Thermus thermophilus [TaxId: 274]
Score = 180 bits (456), Expect = 1e-54
Identities = 62/335 (18%), Positives = 97/335 (28%), Gaps = 58/335 (17%)
Query: 38 ENRNAFSRILFRPRIL--IDVSKIDMNTTVLGFKISMPIMIAPTAMQKMAHPEGEYATAR 95
+ R + L + +S++D+ T LG + P +I + A A
Sbjct: 1 KTTTGLEGFRLRYQALAGLALSEVDLTTPFLGKTLKAPFLIGAMTGGEENGERINLALAE 60
Query: 96 AASAAGTIMTLSSWSTSSVEEVASTGPGIRFFQLYVYKDRNVVAQLVRRAERAGFKAIAL 155
AA A G M L S A F++ + ++ A L
Sbjct: 61 AAEALGVGMMLGSGRILLERPEALRS-----FRVRKVAPKALL--------IANLGLAQL 107
Query: 156 TVDTPRLGRREADIKNRFTLPPFLTLKNFQGLDLGKMDEANDSGLAAYVAGQIDRSLSWK 215
R ++ L + V
Sbjct: 108 RRYGRDDLLRLVEMLEADALAFHVNPLQE------------------AVQRGDTDFRGLV 149
Query: 216 DVKWLQTITKLPILVKGVLTAED-------VQAGAAGIIVSNHGARQLDYVPATIMALEE 268
+ P++VK V A + V+ G V + E
Sbjct: 150 ERLAELLPLPFPVMVKEVGHGLSREAALALRDLPLAAVDVAGAGGTSWARVEEWVRFGEV 209
Query: 269 V-----------------VKATQGRIPVFLDGGVRRGTDVFKALALGASGIFIGRPVVYS 311
V+ +P+ GGV GTD KALALGA + + RP++
Sbjct: 210 RHPELCEIGIPTARAILEVREVLPHLPLVASGGVYTGTDGAKALALGADLLAVARPLLR- 268
Query: 312 LAAEGEKGVRRVLEMLREEFELAMALSGCRSLKEI 346
A EG + V + EE A+ G R+ KE
Sbjct: 269 PALEGAERVAAWIGDYLEELRTALFAIGARNPKEA 303
|
| >d1y0ea_ c.1.2.5 (A:) Putative N-acetylmannosamine-6-phosphate 2-epimerase NanE {Staphylococcus aureus [TaxId: 1280]} Length = 222 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Ribulose-phoshate binding barrel family: NanE-like domain: Putative N-acetylmannosamine-6-phosphate 2-epimerase NanE species: Staphylococcus aureus [TaxId: 1280]
Score = 68.0 bits (165), Expect = 7e-14
Identities = 24/188 (12%), Positives = 54/188 (28%), Gaps = 12/188 (6%)
Query: 134 DRNVVAQLVRRAERAGFKAI-ALTVDTPRLGRREAD-----IKNRFTLPPFLTLKNFQGL 187
+++++ A G I A T + + D I R + +
Sbjct: 21 SSFIMSKMALAAYEGGAVGIRANTKEDILAIKETVDLPVIGIVKRDYDHSDVFITATSKE 80
Query: 188 DLGKMDEANDSGLAAYVAGQIDRSLSWKDVKWLQTITKLPILVKGVLTAED----VQAGA 243
++ + Q + + V +++T ++ + T E+ + G
Sbjct: 81 VDELIESQCEVIALDATLQQRPKETLDELVSYIRTHAPNVEIMADIATVEEAKNAARLGF 140
Query: 244 AGIIVSNHGARQLDYVPATIMALEEVVK--ATQGRIPVFLDGGVRRGTDVFKALALGASG 301
I + HG + +K V +G V + + LG
Sbjct: 141 DYIGTTLHGYTSYTQGQLLYQNDFQFLKDVLQSVDAKVIAEGNVITPDMYKRVMDLGVHC 200
Query: 302 IFIGRPVV 309
+G +
Sbjct: 201 SVVGGAIT 208
|
| >d1yxya1 c.1.2.5 (A:4-233) Putative N-acetylmannosamine-6-phosphate 2-epimerase NanE {Streptococcus pyogenes [TaxId: 1314]} Length = 230 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Ribulose-phoshate binding barrel family: NanE-like domain: Putative N-acetylmannosamine-6-phosphate 2-epimerase NanE species: Streptococcus pyogenes [TaxId: 1314]
Score = 65.6 bits (159), Expect = 5e-13
Identities = 25/189 (13%), Positives = 52/189 (27%), Gaps = 22/189 (11%)
Query: 134 DRNVVAQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLTLKNFQGLD----- 188
++ + + A+ AG I +I+ LP +K
Sbjct: 31 TGGIMPLMAKAAQEAGAVGIRANSVRD-----IKEIQAITDLPIIGIIKKDYPPQEPFIT 85
Query: 189 ------LGKMDEANDSGLAAYVAGQIDRSLS-WKDVKWLQTITKLPILVKGVLTAED--- 238
L ++ ++ +L+ + T ++
Sbjct: 86 ATMTEVDQLAALNIAVIAMDCTKRDRHDGLDIASFIRQVKEKYPNQLLMADISTFDEGLV 145
Query: 239 -VQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALAL 297
QAG + + G A + + + I V +G + + K L
Sbjct: 146 AHQAGIDFVGTTLSGYTPYSRQEAGPD-VALIEALCKAGIAVIAEGKIHSPEEAKKINDL 204
Query: 298 GASGIFIGR 306
G +GI +G
Sbjct: 205 GVAGIVVGG 213
|
| >d1ea0a2 c.1.4.1 (A:423-1193) Alpha subunit of glutamate synthase, central and FMN domains {Azospirillum brasilense [TaxId: 192]} Length = 771 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: FMN-linked oxidoreductases family: FMN-linked oxidoreductases domain: Alpha subunit of glutamate synthase, central and FMN domains species: Azospirillum brasilense [TaxId: 192]
Score = 52.6 bits (126), Expect = 4e-08
Identities = 38/195 (19%), Positives = 62/195 (31%), Gaps = 51/195 (26%)
Query: 217 VKWLQTIT-KLPILVK-------GVLTAEDVQAGAAGIIVSNHGARQLDYVPATIM---- 264
+ L+ I + VK G + A +A A I++S + P T +
Sbjct: 562 IYDLKQINPDAKVTVKLVSRSGIGTIAAGVAKANADIILISGNSG-GTGASPQTSIKFAG 620
Query: 265 -----ALEEVVKA-----TQGRIPVFLDGGVRRGTDVFKALALGASGIFIGR-------- 306
L EV + + R+ + DGG++ G D+ A LGA IG
Sbjct: 621 LPWEMGLSEVHQVLTLNRLRHRVRLRTDGGLKTGRDIVIAAMLGAEEFGIGTASLIAMGC 680
Query: 307 -------------------PVVYSLAAEGEKGVRRVLEMLREEFELAMALSGCRSLKEIT 347
+ + V + L EE +A G RSL E+
Sbjct: 681 IMVRQCHSNTCPVGVCVQDDKLRQKFVGTPEKVVNLFTFLAEEVREILAGLGFRSLNEVI 740
Query: 348 -RDHIVTEWDASLPR 361
R ++ +
Sbjct: 741 GRTDLLHQVSRGAEH 755
|
| >d1ofda2 c.1.4.1 (A:431-1239) Alpha subunit of glutamate synthase, central and FMN domains {Synechocystis sp. [TaxId: 1143]} Length = 809 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: FMN-linked oxidoreductases family: FMN-linked oxidoreductases domain: Alpha subunit of glutamate synthase, central and FMN domains species: Synechocystis sp. [TaxId: 1143]
Score = 51.9 bits (124), Expect = 8e-08
Identities = 34/187 (18%), Positives = 58/187 (31%), Gaps = 51/187 (27%)
Query: 217 VKWLQTIT-KLPILVK-------GVLTAEDVQAGAAGIIVS-----NHGARQ--LDYV-- 259
+ L I + + VK G + A +A A I +S + + +
Sbjct: 589 IYDLHQINPEAQVSVKLVAEIGIGTIAAGVAKANADIIQISGHDGGTGASPLSSIKHAGS 648
Query: 260 PATIMALEEVVKA-----TQGRIPVFLDGGVRRGTDVFKALALGASGIFIGR-------- 306
P + + EV + + R+ + DGG++ G DV A +GA G
Sbjct: 649 P-WELGVTEVHRVLMENQLRDRVLLRADGGLKTGWDVVMAALMGAEEYGFGSIAMIAEGC 707
Query: 307 -------------------PVVYSLAAEGEKGVRRVLEMLREEFELAMALSGCRSLKEIT 347
+ V + EE +A G RSL +I
Sbjct: 708 IMARVCHTNNCPVGVATQQERLRQRFKGVPGQVVNFFYFIAEEVRSLLAHLGYRSLDDII 767
Query: 348 -RDHIVT 353
R ++
Sbjct: 768 GRTDLLK 774
|
| >d1juba_ c.1.4.1 (A:) Dihydroorotate dehydrogenase {Lactococcus lactis, isozyme A [TaxId: 1358]} Length = 311 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: FMN-linked oxidoreductases family: FMN-linked oxidoreductases domain: Dihydroorotate dehydrogenase species: Lactococcus lactis, isozyme A [TaxId: 1358]
Score = 41.9 bits (97), Expect = 7e-05
Identities = 58/322 (18%), Positives = 90/322 (27%), Gaps = 55/322 (17%)
Query: 61 MNTTVLGFKISMPIMIAPTAMQKMAHPEGEYATARAASAAGTIMTLSSWSTSSVEEVAST 120
+NTT K + P M A E AS AG +T S
Sbjct: 2 LNTTFANAKFANPFMNASGVHCM----TIEDLEELKASQAGAYIT------KSSTLEKRE 51
Query: 121 G-PGIRFFQLYVYKDRNVVAQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFTLPPFL 179
G P R+ L N + + + + + G I
Sbjct: 52 GNPLPRYVDLE-LGSINSMGLPNLGFDYYLDYVLKNQKENAQEGPIFFSIAGMSAAENIA 110
Query: 180 TLKNFQGLDLGKMDEAN--DSGLAAYVAGQIDRSLSWKDVKWLQTITKLPILVKGVLTAE 237
LK Q D + E N + D + K +K + T P+ VK +
Sbjct: 111 MLKKIQESDFSGITELNLSCPNVPGEPQLAYDFEATEKLLKEVFTFFTKPLGVKLPPYFD 170
Query: 238 DV----------QAGAAGIIVSNH-----------------------GARQLDYVPATIM 264
V Q + N G P +
Sbjct: 171 LVHFDIMAEILNQFPLTYVNSVNSIGNGLFIDPEAESVVIKPKDGFGGIGGAYIKPTALA 230
Query: 265 ALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFIGRPVVYSLAAEGEKGVRRVL 324
+ + I + GG+ G D F+ L GA+ + IG + EG R++
Sbjct: 231 NVRAFYTRLKPEIQIIGTGGIETGQDAFEHLLCGATMLQIGTALHK----EGPAIFDRII 286
Query: 325 EMLREEFELAMALSGCRSLKEI 346
+ L E M G +S+ +
Sbjct: 287 KELEE----IMNQKGYQSIADF 304
|
| >d1gtea2 c.1.4.1 (A:533-844) Dihydropyrimidine dehydrogenase, domain 4 {Pig (Sus scrofa) [TaxId: 9823]} Length = 312 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: FMN-linked oxidoreductases family: FMN-linked oxidoreductases domain: Dihydropyrimidine dehydrogenase, domain 4 species: Pig (Sus scrofa) [TaxId: 9823]
Score = 41.1 bits (95), Expect = 1e-04
Identities = 13/73 (17%), Positives = 26/73 (35%), Gaps = 5/73 (6%)
Query: 260 PATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFIGRPVVYSLAAEGEKG 319
P + A+ + +A G P+ GG+ + L GAS + + V +
Sbjct: 240 PIALRAVTTIARALPG-FPILATGGIDSAESGLQFLHSGASVLQVCSAVQN----QDFTV 294
Query: 320 VRRVLEMLREEFE 332
++ L+
Sbjct: 295 IQDYCTGLKALLY 307
|
| >d1tv5a1 c.1.4.1 (A:158-566) Dihydroorotate dehydrogenase {Plasmodium falciparum [TaxId: 5833]} Length = 409 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: FMN-linked oxidoreductases family: FMN-linked oxidoreductases domain: Dihydroorotate dehydrogenase species: Plasmodium falciparum [TaxId: 5833]
Score = 40.3 bits (93), Expect = 3e-04
Identities = 21/86 (24%), Positives = 35/86 (40%), Gaps = 9/86 (10%)
Query: 266 LEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFIGRPVVYSLAAEGEKGVRRVLE 325
+ E+ T +IP+ GG+ G D + + GAS + +V+ G K ++
Sbjct: 332 ICEMYNYTNKQIPIIASGGIFSGLDALEKIEAGASVCQLYSCLVF----NGMKSAVQIKR 387
Query: 326 MLREEFELAMALSGCRSLKEIT-RDH 350
L + G +LKE R H
Sbjct: 388 ELNHL----LYQRGYYNLKEAIGRKH 409
|
| >d1d3ga_ c.1.4.1 (A:) Dihydroorotate dehydrogenase {Human (Homo sapiens) [TaxId: 9606]} Length = 367 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: FMN-linked oxidoreductases family: FMN-linked oxidoreductases domain: Dihydroorotate dehydrogenase species: Human (Homo sapiens) [TaxId: 9606]
Score = 37.7 bits (86), Expect = 0.002
Identities = 21/84 (25%), Positives = 34/84 (40%), Gaps = 9/84 (10%)
Query: 268 EVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFIGRPVVYSLAAEGEKGVRRVLEML 327
E+ TQGR+P+ GGV G D + + GAS + + + + G V +V L
Sbjct: 290 EMYALTQGRVPIIGVGGVSSGQDALEKIRAGASLVQLYTALTF----WGPPVVGKVKREL 345
Query: 328 REEFELAMALSGCRSLKEIT-RDH 350
+ G + + DH
Sbjct: 346 EAL----LKEQGFGGVTDAIGADH 365
|
Homologous Domains Detected by HHsearch
Original result of HHsearch against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 366 | |||
| d1tb3a1 | 349 | Hydroxyacid oxidase {Rat (Rattus norvegicus) [TaxI | 100.0 | |
| d1goxa_ | 359 | Glycolate oxidase {Spinach (Spinacia oleracea) [Ta | 100.0 | |
| d1kbia1 | 414 | Flavocytochrome b2, C-terminal domain {Baker's yea | 100.0 | |
| d1p4ca_ | 353 | Membrane-associated (S)-mandelate dehydrogenase {P | 100.0 | |
| d1p0ka_ | 329 | Isopentenyl-diphosphate delta-isomerase {Bacillus | 100.0 | |
| d1vcfa1 | 310 | Isopentenyl-diphosphate delta-isomerase {Thermus t | 100.0 | |
| d1eepa_ | 388 | Inosine monophosphate dehydrogenase (IMPDH) {Lyme | 99.94 | |
| d1vrda1 | 330 | Inosine monophosphate dehydrogenase (IMPDH) {Therm | 99.92 | |
| d1zfja1 | 365 | Inosine monophosphate dehydrogenase (IMPDH) {Strep | 99.92 | |
| d1jr1a1 | 378 | Inosine monophosphate dehydrogenase (IMPDH) {Chine | 99.91 | |
| d1pvna1 | 362 | Inosine monophosphate dehydrogenase (IMPDH) {Tritr | 99.91 | |
| d2cu0a1 | 368 | Inosine monophosphate dehydrogenase (IMPDH) {Pyroc | 99.9 | |
| d1gtea2 | 312 | Dihydropyrimidine dehydrogenase, domain 4 {Pig (Su | 99.89 | |
| d1juba_ | 311 | Dihydroorotate dehydrogenase {Lactococcus lactis, | 99.87 | |
| d1ep3a_ | 311 | Dihydroorotate dehydrogenase {Lactococcus lactis, | 99.83 | |
| d1tv5a1 | 409 | Dihydroorotate dehydrogenase {Plasmodium falciparu | 99.82 | |
| d1d3ga_ | 367 | Dihydroorotate dehydrogenase {Human (Homo sapiens) | 99.82 | |
| d1vhna_ | 305 | Putative flavin oxidoreducatase TM0096 {Thermotoga | 99.82 | |
| d1ea0a2 | 771 | Alpha subunit of glutamate synthase, central and F | 99.8 | |
| d2b4ga1 | 312 | Dihydroorotate dehydrogenase {Trypanosoma brucei [ | 99.8 | |
| d1ofda2 | 809 | Alpha subunit of glutamate synthase, central and F | 99.74 | |
| d1f76a_ | 336 | Dihydroorotate dehydrogenase {Escherichia coli [Ta | 99.61 | |
| d1yxya1 | 230 | Putative N-acetylmannosamine-6-phosphate 2-epimera | 99.43 | |
| d1y0ea_ | 222 | Putative N-acetylmannosamine-6-phosphate 2-epimera | 99.4 | |
| d1z41a1 | 337 | NADPH dehydrogenase NamA {Bacillus subtilis [TaxId | 99.27 | |
| d1ps9a1 | 330 | 2,4-dienoyl-CoA reductase, N-terminal domain {Esch | 99.0 | |
| d1djqa1 | 340 | Trimethylamine dehydrogenase, N-terminal domain {M | 98.99 | |
| d1vyra_ | 363 | Pentaerythritol tetranirate reductase {Enterobacte | 98.54 | |
| d1icpa_ | 364 | 12-oxophytodienoate reductase (OPR, OYE homolog) { | 98.51 | |
| d1gwja_ | 374 | Morphinone reductase {Pseudomonas putida [TaxId: 3 | 98.44 | |
| d1rd5a_ | 261 | Trp synthase alpha-subunit {Maize (Zea mays) [TaxI | 98.38 | |
| d1qopa_ | 267 | Trp synthase alpha-subunit {Salmonella typhimurium | 98.38 | |
| d1mzha_ | 225 | Deoxyribose-phosphate aldolase DeoC {Aquifex aeoli | 98.26 | |
| d1wa3a1 | 202 | KDPG aldolase {Thermotoga maritima [TaxId: 2336]} | 98.25 | |
| d1o0ya_ | 251 | Deoxyribose-phosphate aldolase DeoC {Thermotoga ma | 98.24 | |
| d1ub3a_ | 211 | Deoxyribose-phosphate aldolase DeoC {Thermus therm | 98.2 | |
| d1q45a_ | 380 | 12-oxophytodienoate reductase (OPR, OYE homolog) { | 98.19 | |
| d1a53a_ | 247 | Indole-3-glycerophosphate synthase, IPGS {Archaeon | 98.08 | |
| d1geqa_ | 248 | Trp synthase alpha-subunit {Archaeon Pyrococcus fu | 98.06 | |
| d1oyaa_ | 399 | Old yellow enzyme (OYE) {Lager yeast (Saccharomyce | 98.03 | |
| d1vc4a_ | 254 | Indole-3-glycerophosphate synthase, IPGS {Thermus | 97.94 | |
| d1xm3a_ | 251 | Thiazole biosynthesis protein ThiG {Bacillus subti | 97.88 | |
| d1wv2a_ | 243 | Thiazole biosynthesis protein ThiG {Pseudomonas ae | 97.73 | |
| d1n7ka_ | 234 | Deoxyribose-phosphate aldolase DeoC {Archaeon Aero | 97.71 | |
| d1wbha1 | 213 | KDPG aldolase {Escherichia coli [TaxId: 562]} | 97.7 | |
| d1vhca_ | 212 | Hypothetical protein HI0047 {Haemophilus influenza | 97.67 | |
| d1vcva1 | 226 | Deoxyribose-phosphate aldolase DeoC {Archaeon Pyro | 97.65 | |
| d1i4na_ | 251 | Indole-3-glycerophosphate synthase, IPGS {Thermoto | 97.55 | |
| d1thfd_ | 253 | Cyclase subunit (or domain) of imidazoleglycerolph | 97.54 | |
| d1xi3a_ | 206 | Thiamin phosphate synthase {Archaeon (Pyrococcus f | 97.51 | |
| d1piia2 | 254 | Indole-3-glycerophosphate synthase, IPGS {Escheric | 97.45 | |
| d1ujpa_ | 271 | Trp synthase alpha-subunit {Thermus thermophilus [ | 97.45 | |
| d1vzwa1 | 239 | Phosphoribosylformimino-5-aminoimidazole carboxami | 97.3 | |
| d2flia1 | 217 | D-ribulose-5-phosphate 3-epimerase {Streptococcus | 97.27 | |
| d1p1xa_ | 250 | Deoxyribose-phosphate aldolase DeoC {Escherichia c | 97.26 | |
| d1ka9f_ | 251 | Cyclase subunit (or domain) of imidazoleglycerolph | 97.2 | |
| d1znna1 | 254 | Pyridoxal biosynthesis lyase PdxS {Bacillus stearo | 97.2 | |
| d1q6oa_ | 213 | 3-keto-L-gulonate 6-phosphate decarboxylase {Esche | 97.15 | |
| d2tpsa_ | 226 | Thiamin phosphate synthase {Bacillus subtilis [Tax | 97.12 | |
| d1hg3a_ | 224 | Triosephosphate isomerase {Archaeon Pyrococcus woe | 97.1 | |
| d1h5ya_ | 252 | Cyclase subunit (or domain) of imidazoleglycerolph | 97.06 | |
| d1w0ma_ | 226 | Triosephosphate isomerase {Thermoproteus tenax [Ta | 96.91 | |
| d1jvna1 | 323 | Cyclase subunit (or domain) of imidazoleglycerolph | 96.76 | |
| d1h1ya_ | 220 | D-ribulose-5-phosphate 3-epimerase {Rice (Oryza sa | 96.76 | |
| d1mxsa_ | 216 | KDPG aldolase {Pseudomonas putida [TaxId: 303]} | 96.72 | |
| d2a4aa1 | 256 | Fructose-1,6-bisphosphate aldolase {Plasmodium yoe | 96.66 | |
| d1qapa1 | 167 | Quinolinic acid phosphoribosyltransferase (Nicotin | 96.62 | |
| d1h5ya_ | 252 | Cyclase subunit (or domain) of imidazoleglycerolph | 96.54 | |
| d1thfd_ | 253 | Cyclase subunit (or domain) of imidazoleglycerolph | 96.51 | |
| d2czda1 | 206 | Orotidine 5'-monophosphate decarboxylase (OMP deca | 96.46 | |
| d1vpxa_ | 218 | Decameric fructose-6-phosphate aldolase/transaldol | 96.37 | |
| d1ka9f_ | 251 | Cyclase subunit (or domain) of imidazoleglycerolph | 96.35 | |
| d1qpoa1 | 169 | Quinolinic acid phosphoribosyltransferase (Nicotin | 96.28 | |
| d1qo2a_ | 241 | Phosphoribosylformimino-5-aminoimidazole carboxami | 96.21 | |
| d1vzwa1 | 239 | Phosphoribosylformimino-5-aminoimidazole carboxami | 96.01 | |
| d1rpxa_ | 230 | D-ribulose-5-phosphate 3-epimerase {Potato (Solanu | 95.66 | |
| d1tqja_ | 221 | D-ribulose-5-phosphate 3-epimerase {Synechocystis | 95.39 | |
| d1l6wa_ | 220 | Decameric fructose-6-phosphate aldolase/transaldol | 95.39 | |
| d1o4ua1 | 170 | Quinolinic acid phosphoribosyltransferase (Nicotin | 95.37 | |
| d1wx0a1 | 211 | Decameric fructose-6-phosphate aldolase/transaldol | 95.23 | |
| d1gvfa_ | 284 | Tagatose-1,6-bisphosphate aldolase {Escherichia co | 95.18 | |
| d1jvna1 | 323 | Cyclase subunit (or domain) of imidazoleglycerolph | 95.13 | |
| d1xkya1 | 292 | Dihydrodipicolinate synthase {Bacillus anthracis [ | 95.05 | |
| d1xxxa1 | 296 | Dihydrodipicolinate synthase {Mycobacterium tuberc | 95.0 | |
| d1viza_ | 229 | PcrB protein homolog YerE {Bacillus subtilis [TaxI | 94.88 | |
| d1tqxa_ | 221 | D-ribulose-5-phosphate 3-epimerase {Plasmodium fal | 94.88 | |
| d2a6na1 | 292 | Dihydrodipicolinate synthase {Escherichia coli [Ta | 94.87 | |
| d2f6ua1 | 231 | (S)-3-O-geranylgeranylglyceryl phosphate synthase | 94.86 | |
| d1qopa_ | 267 | Trp synthase alpha-subunit {Salmonella typhimurium | 94.56 | |
| d1ojxa_ | 251 | Archaeal fructose 1,6-bisphosphate aldolase {Archa | 94.33 | |
| d1geqa_ | 248 | Trp synthase alpha-subunit {Archaeon Pyrococcus fu | 94.27 | |
| d1zfja1 | 365 | Inosine monophosphate dehydrogenase (IMPDH) {Strep | 94.27 | |
| d1o5ka_ | 295 | Dihydrodipicolinate synthase {Thermotoga maritima | 94.23 | |
| d1km4a_ | 212 | Orotidine 5'-monophosphate decarboxylase (OMP deca | 94.21 | |
| d1twda_ | 247 | Copper homeostasis protein CutC {Shigella flexneri | 94.21 | |
| d1eepa_ | 388 | Inosine monophosphate dehydrogenase (IMPDH) {Lyme | 93.88 | |
| d1vrda1 | 330 | Inosine monophosphate dehydrogenase (IMPDH) {Therm | 93.75 | |
| d1vhca_ | 212 | Hypothetical protein HI0047 {Haemophilus influenza | 93.7 | |
| d1mxsa_ | 216 | KDPG aldolase {Pseudomonas putida [TaxId: 303]} | 93.48 | |
| d1yxya1 | 230 | Putative N-acetylmannosamine-6-phosphate 2-epimera | 93.4 | |
| d1wbha1 | 213 | KDPG aldolase {Escherichia coli [TaxId: 562]} | 93.08 | |
| d1xm3a_ | 251 | Thiazole biosynthesis protein ThiG {Bacillus subti | 92.65 | |
| d1y0ea_ | 222 | Putative N-acetylmannosamine-6-phosphate 2-epimera | 92.03 | |
| d1ujpa_ | 271 | Trp synthase alpha-subunit {Thermus thermophilus [ | 91.83 | |
| d1hl2a_ | 295 | N-acetylneuraminate lyase {Escherichia coli [TaxId | 91.82 | |
| d1f74a_ | 293 | N-acetylneuraminate lyase {Haemophilus influenzae | 91.45 | |
| d1jr1a1 | 378 | Inosine monophosphate dehydrogenase (IMPDH) {Chine | 91.31 | |
| d1wv2a_ | 243 | Thiazole biosynthesis protein ThiG {Pseudomonas ae | 89.84 | |
| d1qo2a_ | 241 | Phosphoribosylformimino-5-aminoimidazole carboxami | 89.82 | |
| d1pvna1 | 362 | Inosine monophosphate dehydrogenase (IMPDH) {Tritr | 89.29 | |
| d2p10a1 | 197 | Uncharacterized protein Mll9387 {Mesorhizobium lot | 88.84 | |
| d1rvga_ | 305 | Fructose-bisphosphate aldolase (FBP aldolase) {The | 88.64 | |
| d2mnra1 | 227 | Mandelate racemase {Pseudomonas putida [TaxId: 303 | 88.58 | |
| d2chra1 | 244 | Chlormuconate cycloisomerase {Alcaligenes eutrophu | 88.39 | |
| d1vc4a_ | 254 | Indole-3-glycerophosphate synthase, IPGS {Thermus | 87.84 | |
| d1oy0a_ | 262 | Ketopantoate hydroxymethyltransferase PanB {Mycoba | 87.25 | |
| d1wa3a1 | 202 | KDPG aldolase {Thermotoga maritima [TaxId: 2336]} | 87.13 | |
| d1o66a_ | 260 | Ketopantoate hydroxymethyltransferase PanB {Neisse | 86.88 | |
| d1ea0a2 | 771 | Alpha subunit of glutamate synthase, central and F | 86.83 | |
| d1muca1 | 242 | Muconate-lactonizing enzyme {Pseudomonas putida [T | 86.74 | |
| d1vhna_ | 305 | Putative flavin oxidoreducatase TM0096 {Thermotoga | 85.46 | |
| d1vr6a1 | 338 | 3-deoxy-D-arabino-heptulosonate-7-phosphate syntha | 85.41 | |
| d1geha1 | 307 | Ribulose 1,5-bisphosphate carboxylase-oxygenase {A | 84.58 | |
| d1dbta_ | 237 | Orotidine 5'-monophosphate decarboxylase (OMP deca | 83.87 | |
| d1to3a_ | 291 | Putative aldolase YihT {Salmonella typhimurium [Ta | 83.4 | |
| d1nu5a1 | 243 | Chlormuconate cycloisomerase {Pseudomonas sp. p51 | 83.3 | |
| d1tzza1 | 247 | Hypothetical protein Bll6730 {Bradyrhizobium japon | 83.04 | |
| d1wufa1 | 244 | N-acylamino acid racemase {Listeria innocua [TaxId | 82.77 | |
| d2cu0a1 | 368 | Inosine monophosphate dehydrogenase (IMPDH) {Pyroc | 82.67 | |
| d1muma_ | 289 | 2-methylisocitrate lyase {Escherichia coli [TaxId: | 82.24 | |
| d1xhfa1 | 121 | Aerobic respiration control protein ArcA, N-termin | 82.15 | |
| d1rvka1 | 255 | Hypothetical protein Atu3453 {Agrobacterium tumefa | 81.96 | |
| d2d69a1 | 291 | Ribulose 1,5-bisphosphate carboxylase-oxygenase {A | 81.43 | |
| d1xkya1 | 292 | Dihydrodipicolinate synthase {Bacillus anthracis [ | 80.96 | |
| d1dz3a_ | 123 | Sporulation response regulator Spo0A {Bacillus ste | 80.94 | |
| d7reqa2 | 168 | Methylmalonyl-CoA mutase alpha subunit, C-terminal | 80.84 | |
| d1rd5a_ | 261 | Trp synthase alpha-subunit {Maize (Zea mays) [TaxI | 80.68 | |
| d1s2wa_ | 275 | Phosphoenolpyruvate mutase {Blue mussel (Mytilus e | 80.53 | |
| d1eixa_ | 231 | Orotidine 5'-monophosphate decarboxylase (OMP deca | 80.31 | |
| d1ccwa_ | 137 | Glutamate mutase, small subunit {Clostridium cochl | 80.1 |
| >d1tb3a1 c.1.4.1 (A:1-349) Hydroxyacid oxidase {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: FMN-linked oxidoreductases family: FMN-linked oxidoreductases domain: Hydroxyacid oxidase species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=100.00 E-value=7.9e-75 Score=565.03 Aligned_cols=343 Identities=46% Similarity=0.754 Sum_probs=311.3
Q ss_pred CCCChHHHHHHHHHhCCccchhhhcCCccchhhHHHhHhcccceeeeccccCCCCCCccceeEcCcccCCceEecccccc
Q 017781 3 EITNVMEYEAIAKEKLPKMVFDYYASGAEDQWTLQENRNAFSRILFRPRILIDVSKIDMNTTVLGFKISMPIMIAPTAMQ 82 (366)
Q Consensus 3 ~~~~~~d~~~~A~~~l~~~~~~y~~~ga~~~~t~~~N~~~f~~i~l~pr~l~~~~~vd~st~l~g~~l~~Pi~iApm~~~ 82 (366)
.++|++|||+.||++||+.+|+|++||++||.|+++|+++||+|+|+||+|++++++||||+|+|+++++||+||||+++
T Consensus 1 ~~~~i~d~~~~A~~~lp~~~~~y~~~ga~de~t~~~N~~aFd~i~l~pr~L~d~~~idlst~~lG~~l~~P~~Iapmtgg 80 (349)
T d1tb3a1 1 PLVCLADFKAHAQKQLSKTSWDFIEGEADDGITYSENIAAFKRIRLRPRYLRDMSKVDTRTTIQGQEISAPICISPTAFH 80 (349)
T ss_dssp CCCSHHHHHHHHHHTSCHHHHHHHHCCCTTCHHHHHHHHHHHHCCBCCCCSSCCSSCBCCEEETTEEESSSEEECCCSCG
T ss_pred CcccHHHHHHHHHHHCCHHHHHHHhccccccHHHHHHHHHHHhccEEcccccCCCCCCCceeECCcCccceEEEcchhcc
Confidence 47899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccCChhhHHHHHHHHHcCCceecCCCCCCCHHHHhccCC-CceEEEeeecCCHHHHHHHHHHHHHcCCCEEEEecCCCC
Q 017781 83 KMAHPEGEYATARAASAAGTIMTLSSWSTSSVEEVASTGP-GIRFFQLYVYKDRNVVAQLVRRAERAGFKAIALTVDTPR 161 (366)
Q Consensus 83 ~l~~~~~e~~la~aa~~~G~~~~vs~~~~~~~e~i~~~~~-~~~~~Qly~~~d~~~~~~~l~ra~~~G~~ai~vtvd~p~ 161 (366)
++.|+++|..+|++|+++|++|++|++++.+.|++.+..+ ++.|||+|.+++++...+++++++++|+.++++|+|.|.
T Consensus 81 ~~~~~~~~~~lA~aA~~~g~~~~~~s~s~~~~e~v~~~~~~~~~~~ql~~~~~~~~~~~~i~~~~~~g~~a~~~tvd~~~ 160 (349)
T d1tb3a1 81 SIAWPDGEKSTARAAQEANICYVISSYASYSLEDIVAAAPEGFRWFQLYMKSDWDFNKQMVQRAEALGFKALVITIDTPV 160 (349)
T ss_dssp GGTCTTTHHHHHHHHHHHTCCEEECTTCSSCHHHHHHHSTTCCEEEECCCCSCTTHHHHHHHHHHHHTCCCEEEECSCSS
T ss_pred cccccchhhHHHHhhhhcccceeecccccccchhhhhhccCCCeeeeeecccCHHHHHHHHHHHHhcCCcccccccCchh
Confidence 9999999999999999999999999999999999987776 689999999999999999999999999999999999999
Q ss_pred CcchhHHHhhhcCCCCccccccccccccCCCccccchhhHHHhhhccCCCCCHHHHHHHHHhcCCCEEEEeccCHHH---
Q 017781 162 LGRREADIKNRFTLPPFLTLKNFQGLDLGKMDEANDSGLAAYVAGQIDRSLSWKDVKWLQTITKLPILVKGVLTAED--- 238 (366)
Q Consensus 162 ~g~r~~d~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~i~~lr~~~~~pv~vK~v~~~~d--- 238 (366)
.++|++|++++|.+|..+...++..+...... ........++.++|++++|+|+.|+.|+++|++.+.+|
T Consensus 161 ~~~~~~d~r~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~i~~l~~~~~~pii~Kgi~~~~da~~ 233 (349)
T d1tb3a1 161 LGNRRRDKRNQLNLEANILLKDLRALKEEKPT-------QSVPVSFPKASFCWNDLSLLQSITRLPIILKGILTKEDAEL 233 (349)
T ss_dssp CCCCHHHHHTTCCCCC----CCSCCCCC--------------------CCCCHHHHHHHHTTCCSCEEEEEECSHHHHHH
T ss_pred hcchhhhhhccccCCcccchhhhhhhhhcccc-------ccccccccCCCCCHHHHHHHHHhcCCCcccchhhhhHHHHH
Confidence 99999999999988876554443322111100 00111123567899999999999999999999999998
Q ss_pred -HHcCCcEEEEcCCCccCCCCCcchHHHHHHHHHHcCCCceEEEecCCCCHHHHHHHHHhCcCEEEecHHHHHHhhhcCH
Q 017781 239 -VQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFIGRPVVYSLAAEGE 317 (366)
Q Consensus 239 -~~aGad~I~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~i~vi~~GGI~~~~dv~kalalGAd~V~igr~~l~~l~~~G~ 317 (366)
.++|+|+|+||||||+++++++++++.|+++++.+++++|||+|||||+|.||+|||+||||+|+|||||||+++++|+
T Consensus 234 a~~~G~d~i~vsnhggr~~d~~~~~~~~l~~i~~~~~~~~~iiadGGIR~G~Dv~KALALGA~~V~igrp~L~~la~~G~ 313 (349)
T d1tb3a1 234 AMKHNVQGIVVSNHGGRQLDEVSASIDALREVVAAVKGKIEVYMDGGVRTGTDVLKALALGARCIFLGRPILWGLACKGE 313 (349)
T ss_dssp HHHTTCSEEEECCGGGTSSCSBCCHHHHHHHHHHHHTTSSEEEEESSCCSHHHHHHHHHTTCSCEEESHHHHHHHHHHHH
T ss_pred HHHhhccceeeeccccccccccccchhhcceeeeccCCCeeEEeccCcCcHHHHHHHHHcCCCEEEEChHHHHHHHhccH
Confidence 9999999999999999999999999999999999988999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHcCCCChhhhccccee
Q 017781 318 KGVRRVLEMLREEFELAMALSGCRSLKEITRDHIV 352 (366)
Q Consensus 318 ~gv~~~~~~l~~el~~~m~~~G~~~l~el~~~~l~ 352 (366)
+||+++++.|++||+..|.++|+++++||+++.|.
T Consensus 314 ~gv~~~l~~l~~EL~~~M~l~G~~~i~eL~~~~i~ 348 (349)
T d1tb3a1 314 DGVKEVLDILTAELHRCMTLSGCQSVAEISPDLIQ 348 (349)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTCSBGGGCCGGGBC
T ss_pred HHHHHHHHHHHHHHHHHHHHhCCCCHHHcCHhhee
Confidence 99999999999999999999999999999998764
|
| >d1goxa_ c.1.4.1 (A:) Glycolate oxidase {Spinach (Spinacia oleracea) [TaxId: 3562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: FMN-linked oxidoreductases family: FMN-linked oxidoreductases domain: Glycolate oxidase species: Spinach (Spinacia oleracea) [TaxId: 3562]
Probab=100.00 E-value=4.8e-72 Score=547.17 Aligned_cols=353 Identities=90% Similarity=1.356 Sum_probs=324.2
Q ss_pred CCCChHHHHHHHHHhCCccchhhhcCCccchhhHHHhHhcccceeeeccccCCCCCCccceeEcCcccCCceEecccccc
Q 017781 3 EITNVMEYEAIAKEKLPKMVFDYYASGAEDQWTLQENRNAFSRILFRPRILIDVSKIDMNTTVLGFKISMPIMIAPTAMQ 82 (366)
Q Consensus 3 ~~~~~~d~~~~A~~~l~~~~~~y~~~ga~~~~t~~~N~~~f~~i~l~pr~l~~~~~vd~st~l~g~~l~~Pi~iApm~~~ 82 (366)
+++|++|||+.||++||+++|+|++||++||.|+++|+++|++|+|+||+|+|++++||||+|||+++++||+||||+++
T Consensus 2 ~~~~i~d~~~~A~~~lp~~~~~y~~gga~~~~t~~~N~~~Fd~i~l~pr~L~d~~~iDlst~~lG~~~~~P~~IspMtgg 81 (359)
T d1goxa_ 2 EITNVNEYEAIAKQKLPKMVYDYYASGAEDQWTLAENRNAFSRILFRPRILIDVTNIDMTTTILGFKISMPIMIAPTAMQ 81 (359)
T ss_dssp CCCSTTHHHHHHHHHSCHHHHHHHHCCSTTCHHHHHHHHGGGGEEECCCCSCCCSCCBCCEEETTEEESSSEEECCCSCG
T ss_pred cccCHHHHHHHHHHhCCHHHHHHHhccCCccHHHHHHHHHHHhcceecccccCCCCCCCceeECCcccCCceeecccccc
Confidence 47999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccCChhhHHHHHHHHHcCCceecCCCCCCCHHHHhccCCCceEEEeeecCCHHHHHHHHHHHHHcCCCEEEEecCCCCC
Q 017781 83 KMAHPEGEYATARAASAAGTIMTLSSWSTSSVEEVASTGPGIRFFQLYVYKDRNVVAQLVRRAERAGFKAIALTVDTPRL 162 (366)
Q Consensus 83 ~l~~~~~e~~la~aa~~~G~~~~vs~~~~~~~e~i~~~~~~~~~~Qly~~~d~~~~~~~l~ra~~~G~~ai~vtvd~p~~ 162 (366)
+..|+++|..+|++|.++|+++++|+++..+.+++++..+++.|||+|...+......++++++.+|++++++|+|.|..
T Consensus 82 ~~~~~~~e~~lA~aA~~~gi~~~~~s~s~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~a~~~~~~~~vd~~~~ 161 (359)
T d1goxa_ 82 KMAHPEGEYATARAASAAGTIMTLSSWATSSVEEVASTGPGIRFFQLYVYKDRNVVAQLVRRAERAGFKAIALTVDTPRL 161 (359)
T ss_dssp GGTCTTHHHHHHHHHHHTTCCEEECTTCSSCHHHHHTTCCCCEEEEECCBSSHHHHHHHHHHHHHTTCCEEEEECSCSSC
T ss_pred ccCCCchHHHhhhhHHhhCCcccccccccccchhhHHhcCCCcccccccchhHHHHHHHHHHHHHhhcccccccccchhh
Confidence 99999999999999999999999999999999999998888999999999999999999999999999999999999999
Q ss_pred cchhHHHhhhcCCCCccccccccccccCCCccccchhhHHHhhhccCCCCCHHHHHHHHHhcCCCEEEEeccCHHH----
Q 017781 163 GRREADIKNRFTLPPFLTLKNFQGLDLGKMDEANDSGLAAYVAGQIDRSLSWKDVKWLQTITKLPILVKGVLTAED---- 238 (366)
Q Consensus 163 g~r~~d~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~i~~lr~~~~~pv~vK~v~~~~d---- 238 (366)
+.|+++.++++..|......++..............+....+..+.++.++|++++|+++.|+.|+++|++.+.+|
T Consensus 162 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~kg~~~~~da~~a 241 (359)
T d1goxa_ 162 GRREADIKNRFVLPPFLTLKNFEGIDLGKMDKANDSGLSSYVAGQIDRSLSWKDVAWLQTITSLPILVKGVITAEDARLA 241 (359)
T ss_dssp CCCHHHHHTTCCCCTTCCCGGGSSSCCC---------HHHHHHHTBCTTCCHHHHHHHHHHCCSCEEEECCCSHHHHHHH
T ss_pred hhhhhhccccccCCcccchhhhhhhccccCcccccccHHHHHHhhcCCCCCHHHHHHHHhhcccceeeecccchHHHHHH
Confidence 9999999999988876665544333222111112223344556667888999999999999999999999999998
Q ss_pred HHcCCcEEEEcCCCccCCCCCcchHHHHHHHHHHcCCCceEEEecCCCCHHHHHHHHHhCcCEEEecHHHHHHhhhcCHH
Q 017781 239 VQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFIGRPVVYSLAAEGEK 318 (366)
Q Consensus 239 ~~aGad~I~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~i~vi~~GGI~~~~dv~kalalGAd~V~igr~~l~~l~~~G~~ 318 (366)
.+.|+|++.++||||+++++++++.+.|+++++.+++++|||+|||||+|.||+|||+||||+|++||||||+++..|++
T Consensus 242 ~~~g~~~~~vsnhggr~ld~~~~~~~~l~~i~~~~~~~~~iiadGGIR~G~Di~KALaLGAd~vgigrp~L~~la~~g~~ 321 (359)
T d1goxa_ 242 VQHGAAGIIVSNHGARQLDYVPATIMALEEVVKAAQGRIPVFLDGGVRRGTDVFKALALGAAGVFIGRPVVFSLAAEGEA 321 (359)
T ss_dssp HHTTCSEEEECCGGGTSSTTCCCHHHHHHHHHHHTTTSSCEEEESSCCSHHHHHHHHHHTCSEEEECHHHHHHHHHHHHH
T ss_pred HHccccceecccccccccccccchhhhchhhhhccCCccceeeccCcCcHHHHHHHHHcCCCEEEEcHHHHHHHHhccHH
Confidence 99999999999999999999999999999999999889999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHcCCCChhhhcccceeecc
Q 017781 319 GVRRVLEMLREEFELAMALSGCRSLKEITRDHIVTEW 355 (366)
Q Consensus 319 gv~~~~~~l~~el~~~m~~~G~~~l~el~~~~l~~~~ 355 (366)
||+++|+.|++||+.+|.++|+++++||++..|+...
T Consensus 322 gv~~~i~~l~~EL~~~M~l~G~~~i~~L~~~~l~~~~ 358 (359)
T d1goxa_ 322 GVKKVLQMMRDEFELTMALSGCRSLKEISRSHIAADW 358 (359)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTCSBTTTCCGGGEEETT
T ss_pred HHHHHHHHHHHHHHHHHHHhCCCCHHHcCHhhccCCC
Confidence 9999999999999999999999999999999997654
|
| >d1kbia1 c.1.4.1 (A:98-511) Flavocytochrome b2, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: FMN-linked oxidoreductases family: FMN-linked oxidoreductases domain: Flavocytochrome b2, C-terminal domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=100.00 E-value=5.1e-68 Score=527.74 Aligned_cols=357 Identities=39% Similarity=0.677 Sum_probs=307.9
Q ss_pred CCCCChHHHHHHHHHhCCccchhhhcCCccchhhHHHhHhcccceeeeccccCCCCCCccceeEcCcccCCceEeccccc
Q 017781 2 GEITNVMEYEAIAKEKLPKMVFDYYASGAEDQWTLQENRNAFSRILFRPRILIDVSKIDMNTTVLGFKISMPIMIAPTAM 81 (366)
Q Consensus 2 ~~~~~~~d~~~~A~~~l~~~~~~y~~~ga~~~~t~~~N~~~f~~i~l~pr~l~~~~~vd~st~l~g~~l~~Pi~iApm~~ 81 (366)
++++|++|||+.||++||+.+|+|++||++||.|+++|+++||+|+|+||+|+|++++||||+|||+++++||+|||||+
T Consensus 23 ~~~~~~~d~~~~A~~~lp~~~~~y~~~ga~~e~t~~~N~~aFd~i~l~Pr~L~dvs~iDlst~~lG~~l~~P~~Isp~g~ 102 (414)
T d1kbia1 23 DNIINLYDFEYLASQTLTKQAWAYYSSGANDEVTHRENHNAYHRIFFKPKILVDVRKVDISTDMLGSHVDVPFYVSATAL 102 (414)
T ss_dssp GGCCSHHHHHHHHHHHSCHHHHHHHHCCSTTCHHHHHHHHGGGGCEECCCCSCCCSSCBCCEEETTEEESSSEEECCCSC
T ss_pred hhcCCHHHHHHHHHHhCCHHHHHHHhccccchHHHHHHHHHHHhceeeccccCCCcCCCCceeECCccCCCCEEEChhhh
Confidence 56899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccccCCh-hh--HHHHHHHHHcCCceecCCCCCCCHHHHhccCC---CceEEEeeecCCHHHHHHHHHHHHHcCCCEEEE
Q 017781 82 QKMAHPE-GE--YATARAASAAGTIMTLSSWSTSSVEEVASTGP---GIRFFQLYVYKDRNVVAQLVRRAERAGFKAIAL 155 (366)
Q Consensus 82 ~~l~~~~-~e--~~la~aa~~~G~~~~vs~~~~~~~e~i~~~~~---~~~~~Qly~~~d~~~~~~~l~ra~~~G~~ai~v 155 (366)
+++.||. .+ .+.++++...|+++++|+.+..+.+++.+..+ .+.|||+|.+.+......++++++++|++++++
T Consensus 103 ~~~~~~~~~~~~~A~a~aa~~~~~~~~ls~~~~~~~~~~~~~a~~~~~~~~~q~y~~~~~~~~~~l~~ra~~ag~~al~~ 182 (414)
T d1kbia1 103 CKLGNPLEGEKDVARGCGQGVTKVPQMISTLASCSPEEIIEAAPSDKQIQWYQLYVNSDRKITDDLVKNVEKLGVKALFV 182 (414)
T ss_dssp GGGTCTTTTHHHHHHHHHSSSSCCCEEECTTCSSCHHHHHHTCCCSSCCEEEEECCCSSHHHHHHHHHHHHHHTCSCEEE
T ss_pred hcccCcchhHHHHHhhHHHhhhccccccccccccchHHHHHHhcCCccchhhcccccccHHHHHHHHHHHHHcCCccccc
Confidence 9999984 33 44555555589999999999999999987665 458999999999999999999999999999999
Q ss_pred ecCCCCCcchhHHHhhhcCCCCccccccccccccCCCccccchhhHHHhhhccCCCCCHHHHHHHHHhcCCCEEEEeccC
Q 017781 156 TVDTPRLGRREADIKNRFTLPPFLTLKNFQGLDLGKMDEANDSGLAAYVAGQIDRSLSWKDVKWLQTITKLPILVKGVLT 235 (366)
Q Consensus 156 tvd~p~~g~r~~d~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~i~~lr~~~~~pv~vK~v~~ 235 (366)
|+|.|..++|++|+++.+..+..... .+.. .... ...+....+....++.++|++++|+++.++.|+++|++.+
T Consensus 183 tvD~~~~g~re~d~~~~~~~~~~~~~-~~~~---~~~~--~~~~~~~~i~~~~~~~l~~~~i~~i~~~~~~~~i~kgi~~ 256 (414)
T d1kbia1 183 TVDAPSLGQREKDMKLKFSNTKAGPK-AMKK---TNVE--ESQGASRALSKFIDPSLTWKDIEELKKKTKLPIVIKGVQR 256 (414)
T ss_dssp ECSCSSCCCCHHHHHHHHTTCC--------C---CCCS--SCCCGGGGCBTTBCTTCCHHHHHHHHHHCSSCEEEEEECS
T ss_pred ccccccccccHHHHHhcccccccchh-hhhc---cccc--ccccHHHHHHHhcccCCCHHHHHHHhccCCceEEeeccch
Confidence 99999999999999988753321100 0000 0000 0011122333445677899999999999999999999999
Q ss_pred HHH----HHcCCcEEEEcCCCccCCCCCcchHHHHHHHHHHc-----CCCceEEEecCCCCHHHHHHHHHhCcCEEEecH
Q 017781 236 AED----VQAGAAGIIVSNHGARQLDYVPATIMALEEVVKAT-----QGRIPVFLDGGVRRGTDVFKALALGASGIFIGR 306 (366)
Q Consensus 236 ~~d----~~aGad~I~vs~~gg~~~~~~~~~~~~l~~i~~~~-----~~~i~vi~~GGI~~~~dv~kalalGAd~V~igr 306 (366)
.++ .++|+|+++++||||+++++.+++...++++.+.+ .+++|||+|||||+|.||+|||+||||+|+|||
T Consensus 257 ~~da~~~~~~G~~~i~vsnhggr~~d~~~~~~~~l~~i~~~~~~~~v~~~~~viadGGIR~G~DVaKALALGAdaVgigr 336 (414)
T d1kbia1 257 TEDVIKAAEIGVSGVVLSNHGGRQLDFSRAPIEVLAETMPILEQRNLKDKLEVFVDGGVRRGTDVLKALCLGAKGVGLGR 336 (414)
T ss_dssp HHHHHHHHHTTCSEEEECCTTTTSSTTCCCHHHHHHHHHHHHHTTTCBTTBEEEEESSCCSHHHHHHHHHHTCSEEEECH
T ss_pred hHHHHHHHhcCCcceeeccccccccccccccccchhhhhhhhhhhccCCceeEEecCCcCcHHHHHHHHHcCCCEEEEcH
Confidence 988 99999999999999999999999999999887653 467999999999999999999999999999999
Q ss_pred HHHHHhhhcCHHHHHHHHHHHHHHHHHHHHHcCCCChhhhcccceeeccCCCCCCCCC
Q 017781 307 PVVYSLAAEGEKGVRRVLEMLREEFELAMALSGCRSLKEITRDHIVTEWDASLPRPVP 364 (366)
Q Consensus 307 ~~l~~l~~~G~~gv~~~~~~l~~el~~~m~~~G~~~l~el~~~~l~~~~~~~~~~~~~ 364 (366)
||||++++.|++||+++++.|++||+.+|.++|+++++||+++.|....-+.+...+|
T Consensus 337 p~L~~la~~G~egv~~~l~~l~~EL~~~M~l~G~~si~eL~~~~l~~~~~~~~~~~~p 394 (414)
T d1kbia1 337 PFLYANSCYGRNGVEKAIEILRDEIEMSMRLLGVTSIAELKPDLLDLSTLKARTVGVP 394 (414)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCBGGGCCGGGEECTTTTCEECCCC
T ss_pred HHHHHHHhccHHHHHHHHHHHHHHHHHHHHHhCCCCHHHcCHHHccccccccccCCCC
Confidence 9999999999999999999999999999999999999999999988665544444443
|
| >d1p4ca_ c.1.4.1 (A:) Membrane-associated (S)-mandelate dehydrogenase {Pseudomonas putida [TaxId: 303]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: FMN-linked oxidoreductases family: FMN-linked oxidoreductases domain: Membrane-associated (S)-mandelate dehydrogenase species: Pseudomonas putida [TaxId: 303]
Probab=100.00 E-value=5.8e-67 Score=509.24 Aligned_cols=348 Identities=43% Similarity=0.754 Sum_probs=313.5
Q ss_pred CCCChHHHHHHHHHhCCccchhhhcCCccchhhHHHhHhcccceeeeccccCCCCCCccceeEcCcccCCceEecccccc
Q 017781 3 EITNVMEYEAIAKEKLPKMVFDYYASGAEDQWTLQENRNAFSRILFRPRILIDVSKIDMNTTVLGFKISMPIMIAPTAMQ 82 (366)
Q Consensus 3 ~~~~~~d~~~~A~~~l~~~~~~y~~~ga~~~~t~~~N~~~f~~i~l~pr~l~~~~~vd~st~l~g~~l~~Pi~iApm~~~ 82 (366)
.++|+.|||+.||++||++.|+|++||++||.|+++|+.+||+|+|+||+|+|+++|||||+|+|+++++||+|+||+++
T Consensus 1 ~~~~~~d~~~~a~~~~p~~~~~y~~~ga~~~~t~~~N~~aFd~i~l~pr~L~d~~~idlst~~lGk~ls~Pi~Iapmtgg 80 (353)
T d1p4ca_ 1 NLFNVEDYRKLAQKRLPKMVYDYLEGGAEDEYGVKHNRDVFQQWRFKPKRLVDVSRRSLQAEVLGKRQSMPLLIGPTGLN 80 (353)
T ss_dssp CCSSHHHHHHHHHHHSCHHHHHHHHCCSTTCHHHHHHHHGGGGEEECCCCSCCCSSCBCCEEETTEEESSSEEECCCSCG
T ss_pred CCCCHHHHHHHHHHhCCHHHHHHHhccccchHHHHHHHHHHHhCcEEcccccCCCCCCCceEECCcCccCceeecccccc
Confidence 47899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccCChhhHHHHHHHHHcCCceecCCCCCCCHHHHhccCCCceEEEeeecCCHHHHHHHHHHHHHcCCCEEEEecCCCCC
Q 017781 83 KMAHPEGEYATARAASAAGTIMTLSSWSTSSVEEVASTGPGIRFFQLYVYKDRNVVAQLVRRAERAGFKAIALTVDTPRL 162 (366)
Q Consensus 83 ~l~~~~~e~~la~aa~~~G~~~~vs~~~~~~~e~i~~~~~~~~~~Qly~~~d~~~~~~~l~ra~~~G~~ai~vtvd~p~~ 162 (366)
+..++++|..+|++|+++|++|++|++++.+.+++.+..+...|+|.+ ..+...+..++++++.+|++++++++|.|..
T Consensus 81 ~~~~~~~n~~lA~aA~~~~i~~~~gs~s~~~~~e~~~~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~l~~~vd~~~~ 159 (353)
T d1p4ca_ 81 GALWPKGDLALARAATKAGIPFVLSTASNMSIEDLARQCDGDLWFQLY-VIHREIAQGMVLKALHTGYTTLVLTTDVAVN 159 (353)
T ss_dssp GGTSTTHHHHHHHHHHHHTCCEEECTTCSSCHHHHHHHCCSCEEEEEC-CSSHHHHHHHHHHHHHTTCCEEEEECSCSSC
T ss_pred ccccchhhHHHHHHHHHhhccccccccccccchhHHHhcCCceeeeec-cccHHHHHHhHHHHHHcCCcceeeecccccc
Confidence 999999999999999999999999999999999998887777777766 4678889999999999999999999999999
Q ss_pred cchhHHHhhhcCCCCccccccccccccCCCccccchhhHHHhhhccCCCCCHHHHHHHHHhcCCCEEEEeccCHHH----
Q 017781 163 GRREADIKNRFTLPPFLTLKNFQGLDLGKMDEANDSGLAAYVAGQIDRSLSWKDVKWLQTITKLPILVKGVLTAED---- 238 (366)
Q Consensus 163 g~r~~d~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~i~~lr~~~~~pv~vK~v~~~~d---- 238 (366)
+.|+.|.++++..|...........................+..+.++.++|+.++++++.++.|+++|++.+.++
T Consensus 160 g~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~i~~kgv~~~~~~~~a 239 (353)
T d1p4ca_ 160 GYRERDLHNRFKIPPFLTLKNFEGIDLGKMDKANLEMQAALMSRQMDASFNWEALRWLRDLWPHKLLVKGLLSAEDADRC 239 (353)
T ss_dssp CCCHHHHHHTCCCCTTCCCGGGTTCCCSCCSSTTTTTHHHHTSSCCCTTCCHHHHHHHHHHCCSEEEEEEECCHHHHHHH
T ss_pred CcchhhhhhhhcccchhhhhhhhhhccccccccccchhHHHHHhccCCCCCHHHHHHHHhccccchhhhcchhhhhHHHH
Confidence 9999999999887765544333222111111111122334555666778899999999999999999999999988
Q ss_pred HHcCCcEEEEcCCCccCCCCCcchHHHHHHHHHHcCCCceEEEecCCCCHHHHHHHHHhCcCEEEecHHHHHHhhhcCHH
Q 017781 239 VQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFIGRPVVYSLAAEGEK 318 (366)
Q Consensus 239 ~~aGad~I~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~i~vi~~GGI~~~~dv~kalalGAd~V~igr~~l~~l~~~G~~ 318 (366)
.+.|+|+++++||||+++++.+++++.+++++... ++|||+|||||+|.||+|||+||||+|++|||||++++.+|++
T Consensus 240 ~~~g~~~~~~s~~gg~~~~~~~~~~~~l~~i~~~~--~~~viasGGIR~G~Dv~KALaLGAd~vgigrp~L~~l~~~G~e 317 (353)
T d1p4ca_ 240 IAEGADGVILSNHGGRQLDCAISPMEVLAQSVAKT--GKPVLIDSGFRRGSDIVKALALGAEAVLLGRATLYGLAARGET 317 (353)
T ss_dssp HHTTCSEEEECCGGGTSCTTCCCGGGTHHHHHHHH--CSCEEECSSCCSHHHHHHHHHTTCSCEEESHHHHHHHHHHHHH
T ss_pred HhcCCchhhhcccccccccccccchhcccchhccc--ccceeecCCcCchHHHHHHHHcCCCEEEEcHHHHHHHHhccHH
Confidence 89999999999999999999999999999998876 7899999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHcCCCChhhhcccceee
Q 017781 319 GVRRVLEMLREEFELAMALSGCRSLKEITRDHIVT 353 (366)
Q Consensus 319 gv~~~~~~l~~el~~~m~~~G~~~l~el~~~~l~~ 353 (366)
||+++++.|++||+.+|.++|+++++||+++.|+.
T Consensus 318 gv~~~l~~l~~El~~~M~l~G~~~i~eL~~~~l~~ 352 (353)
T d1p4ca_ 318 GVDEVLTLLKADIDRTLAQIGCPDITSLSPDYLQN 352 (353)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTCCBGGGCCGGGEEE
T ss_pred HHHHHHHHHHHHHHHHHHHhCCCCHHHcCHHhccC
Confidence 99999999999999999999999999999998864
|
| >d1p0ka_ c.1.4.1 (A:) Isopentenyl-diphosphate delta-isomerase {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: FMN-linked oxidoreductases family: FMN-linked oxidoreductases domain: Isopentenyl-diphosphate delta-isomerase species: Bacillus subtilis [TaxId: 1423]
Probab=100.00 E-value=4.7e-47 Score=365.12 Aligned_cols=276 Identities=21% Similarity=0.273 Sum_probs=222.0
Q ss_pred hcccceeeecccc--CCCCCCccceeEcCcccCCceEecccc-cccccCChhhHHHHHHHHHcCCceecCCCCCCCHHHH
Q 017781 41 NAFSRILFRPRIL--IDVSKIDMNTTVLGFKISMPIMIAPTA-MQKMAHPEGEYATARAASAAGTIMTLSSWSTSSVEEV 117 (366)
Q Consensus 41 ~~f~~i~l~pr~l--~~~~~vd~st~l~g~~l~~Pi~iApm~-~~~l~~~~~e~~la~aa~~~G~~~~vs~~~~~~~e~i 117 (366)
.+||+|.|+|++| .|+++|||+|+|+|+++++||++|||+ +....+++++.++|++|++.|+++++|++++.+.++.
T Consensus 3 tgfddi~lvP~~l~~~d~~~vdlst~i~G~~l~~Pi~is~Ms~g~~~~~~~~~~alA~aA~~~g~~~~~~~~~~~~~~~~ 82 (329)
T d1p0ka_ 3 TGLDDITFVHVSLPDLALEQVDISTKIGELSSSSPIFINAMTGGGGKLTYEINKSLARAASQAGIPLAVGSQMSALKDPS 82 (329)
T ss_dssp CSGGGEEECCCSCCCCCGGGCBCCEEETTEEESCSEEEECCCCSCHHHHHHHHHHHHHHHHHHTCCEECCCCTTTTTCHH
T ss_pred CCcceEEEECCCCCCCChhhCCCCEEECCEEcCCceEECCHHHhhhhccHHHHHHHHHHHHHcCCCeecccccccchhHH
Confidence 3699999999999 578999999999999999999999994 4455678889999999999999999999887766654
Q ss_pred hccC------CCceEEEeeecCCHHHHHHHHHHHHHcCCCEEEEecCCCCCcchhHHHhhhcCCCCccccccccccccCC
Q 017781 118 ASTG------PGIRFFQLYVYKDRNVVAQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLTLKNFQGLDLGK 191 (366)
Q Consensus 118 ~~~~------~~~~~~Qly~~~d~~~~~~~l~ra~~~G~~ai~vtvd~p~~g~r~~d~~~~~~~p~~~~~~~~~~~~~~~ 191 (366)
.... ..+.++|++............+.+++.|++++.+++++|....+...
T Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~ai~~~~~~~~~~~~~~~----------------------- 139 (329)
T d1p0ka_ 83 ERLSYEIVRKENPNGLIFANLGSEATAAQAKEAVEMIGANALQIHLNVIQEIVMPEG----------------------- 139 (329)
T ss_dssp HHHHHHHHHHHCSSSCEEEEEETTCCHHHHHHHHHHTTCSEEEEEECTTTTC----------------------------
T ss_pred HHhhhhhHhhhCCcceEEEeeccchhHHHHHHHHHHcCCCEEEecccccchhhhccc-----------------------
Confidence 3211 13445666554454555566677788999999999998853211100
Q ss_pred CccccchhhHHHhhhccCCCCCHHHHHHHHHhcCCCEEEEec---cCHHH----HHcCCcEEEEcCCCccCCC-------
Q 017781 192 MDEANDSGLAAYVAGQIDRSLSWKDVKWLQTITKLPILVKGV---LTAED----VQAGAAGIIVSNHGARQLD------- 257 (366)
Q Consensus 192 ~~~~~~~~~~~~~~~~~d~~~~~~~i~~lr~~~~~pv~vK~v---~~~~d----~~aGad~I~vs~~gg~~~~------- 257 (366)
..+....|+.++++++.++.|+++|++ .++++ .++|+|+|+|+||||++++
T Consensus 140 ---------------~~~~~~~~~~i~~i~~~~~~~vivk~v~~~~~~~~a~~~~~~GaD~i~v~~~gG~~~~~~~~~~~ 204 (329)
T d1p0ka_ 140 ---------------DRSFSGALKRIEQICSRVSVPVIVKEVGFGMSKASAGKLYEAGAAAVDIGGYGGTNFSKIENLRR 204 (329)
T ss_dssp ------------------CTTHHHHHHHHHHHCSSCEEEEEESSCCCHHHHHHHHHHTCSEEEEEC--------------
T ss_pred ---------------cccccchHHHHHHHHHHcCCCcEEEecCCcchHHHHHHHHhcCCCEEEEcCCCCCCccccchhhc
Confidence 012234688999999999999999998 46665 8999999999999998643
Q ss_pred ---------CCcchHHHHHHHHHHcCCCceEEEecCCCCHHHHHHHHHhCcCEEEecHHHHHHhhhcCHHHHHHHHHHHH
Q 017781 258 ---------YVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFIGRPVVYSLAAEGEKGVRRVLEMLR 328 (366)
Q Consensus 258 ---------~~~~~~~~l~~i~~~~~~~i~vi~~GGI~~~~dv~kalalGAd~V~igr~~l~~l~~~G~~gv~~~~~~l~ 328 (366)
++++....+.++....+ ++|||+|||||++.||+|||++|||+|++|||++|++++.|++||.++++.|+
T Consensus 205 ~~~~g~~~~~~~~~~~~l~~~~~~~~-~v~viadGGIr~g~Dv~KAlalGAdaV~iGr~~l~al~~~G~~gv~~~l~~l~ 283 (329)
T d1p0ka_ 205 QRQISFFNSWGISTAASLAEIRSEFP-ASTMIASGGLQDALDVAKAIALGASCTGMAGHFLKALTDSGEEGLLEEIQLIL 283 (329)
T ss_dssp -CCGGGGTTCSCCHHHHHHHHHHHCT-TSEEEEESSCCSHHHHHHHHHTTCSEEEECHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccCccchhHhHHHHHHHHHHHHhhcC-CceEEEcCCcccHHHHHHHHHcCCCchhccHHHHHHhccCCHHHHHHHHHHHH
Confidence 35667888888887664 79999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHcCCCChhhhcccceeecc
Q 017781 329 EEFELAMALSGCRSLKEITRDHIVTEW 355 (366)
Q Consensus 329 ~el~~~m~~~G~~~l~el~~~~l~~~~ 355 (366)
+||+..|.++|+++++||++..++..+
T Consensus 284 ~el~~~m~~~G~~~i~el~~~~lv~~~ 310 (329)
T d1p0ka_ 284 EELKLIMTVLGARTIADLQKAPLVIKG 310 (329)
T ss_dssp HHHHHHHHHHTCCBHHHHTTCCEEECH
T ss_pred HHHHHHHHHhCCCCHHHhCcCCEEecc
Confidence 999999999999999999998876543
|
| >d1vcfa1 c.1.4.1 (A:23-332) Isopentenyl-diphosphate delta-isomerase {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: FMN-linked oxidoreductases family: FMN-linked oxidoreductases domain: Isopentenyl-diphosphate delta-isomerase species: Thermus thermophilus [TaxId: 274]
Probab=100.00 E-value=5.6e-45 Score=346.68 Aligned_cols=270 Identities=25% Similarity=0.241 Sum_probs=216.2
Q ss_pred HhHhcccceeeeccccC--CCCCCccceeEcCcccCCceEecccccccccCChhhHHHHHHHHHcCCceecCCCCCCCHH
Q 017781 38 ENRNAFSRILFRPRILI--DVSKIDMNTTVLGFKISMPIMIAPTAMQKMAHPEGEYATARAASAAGTIMTLSSWSTSSVE 115 (366)
Q Consensus 38 ~N~~~f~~i~l~pr~l~--~~~~vd~st~l~g~~l~~Pi~iApm~~~~l~~~~~e~~la~aa~~~G~~~~vs~~~~~~~e 115 (366)
+|+++|++|+|+||+|+ |++++||||+|+|+++++||++|||++++..++..+.++|++|++.|+++++|+++..+.+
T Consensus 1 ~n~~~f~~~~~~p~~L~~~d~~~vDlst~~~G~~l~~Pi~iapm~~~~~~~~~~~~~lA~aA~~~g~~~~~~~~~~~~~~ 80 (310)
T d1vcfa1 1 KTTTGLEGFRLRYQALAGLALSEVDLTTPFLGKTLKAPFLIGAMTGGEENGERINLALAEAAEALGVGMMLGSGRILLER 80 (310)
T ss_dssp CCCCSGGGEEECCCTTCCCCGGGCCCCEEETTEEESSSEEECCCC---CCHHHHHHHHHHHHHHHTCEEEEEECHHHHHC
T ss_pred CCcccccceEEEcccCCCCCcccCcCCeEECCEEcCCCEEEcChhhhhhhhhHHHHHHHHHHHHcCCCeEeccchhcchh
Confidence 48999999999999995 7889999999999999999999999888777777889999999999999999887543222
Q ss_pred H-------HhccCC-CceEEEeeecCCHHHHHHHHHHH-HHcCCCEEEEecCCCCCcchhHHHhhhcCCCCccccccccc
Q 017781 116 E-------VASTGP-GIRFFQLYVYKDRNVVAQLVRRA-ERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLTLKNFQG 186 (366)
Q Consensus 116 ~-------i~~~~~-~~~~~Qly~~~d~~~~~~~l~ra-~~~G~~ai~vtvd~p~~g~r~~d~~~~~~~p~~~~~~~~~~ 186 (366)
+ +.+..+ ...++|++.....+...+.+.++ +..++.++..+++++.. ..
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~------~~---------------- 138 (310)
T d1vcfa1 81 PEALRSFRVRKVAPKALLIANLGLAQLRRYGRDDLLRLVEMLEADALAFHVNPLQE------AV---------------- 138 (310)
T ss_dssp TTTHHHHCCTTTCSSSCEEEEEEGGGGGTCCHHHHHHHHHHHTCSEEEEECCHHHH------HH----------------
T ss_pred hhhhcccchHHhcCCcceeeeecccchhhhhHHHHHHHHHhcCCCeeccccccchh------hh----------------
Confidence 2 122233 56888988766655555555555 44689999998875411 00
Q ss_pred cccCCCccccchhhHHHhhhccCCC-CCHHHHHHHHHhcCCCEEEEec---cCHHH----HHcCCcEEEEcCCCccCC--
Q 017781 187 LDLGKMDEANDSGLAAYVAGQIDRS-LSWKDVKWLQTITKLPILVKGV---LTAED----VQAGAAGIIVSNHGARQL-- 256 (366)
Q Consensus 187 ~~~~~~~~~~~~~~~~~~~~~~d~~-~~~~~i~~lr~~~~~pv~vK~v---~~~~d----~~aGad~I~vs~~gg~~~-- 256 (366)
.. .+.. ..|.+..+.+..++.|+++|++ .++++ .++|+|+|+||||||++.
T Consensus 139 ------------------~~-~~~~~~~~~~~~~~~~~~~~p~~~k~v~~~~~~e~a~~~~~aGvd~i~vsn~gg~~~~~ 199 (310)
T d1vcfa1 139 ------------------QR-GDTDFRGLVERLAELLPLPFPVMVKEVGHGLSREAALALRDLPLAAVDVAGAGGTSWAR 199 (310)
T ss_dssp ------------------TT-SCCCCTTHHHHHHHHCSCSSCEEEECSSSCCCHHHHHHHTTSCCSEEECCCBTSCCHHH
T ss_pred ------------------cc-cccccccHHHHHHHHhhccCCceeeeecCcccHHHHHHHHHcCCCEEEeccccccchhh
Confidence 00 1122 2466677777778999999988 56776 789999999999999642
Q ss_pred ----------------CCCcchHHHHHHHHHHcCCCceEEEecCCCCHHHHHHHHHhCcCEEEecHHHHHHhhhcCHHHH
Q 017781 257 ----------------DYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFIGRPVVYSLAAEGEKGV 320 (366)
Q Consensus 257 ----------------~~~~~~~~~l~~i~~~~~~~i~vi~~GGI~~~~dv~kalalGAd~V~igr~~l~~l~~~G~~gv 320 (366)
+.+.++++.|.++++.. +++|||+||||+++.||+|||++|||+|++||||+|+++ .|++||
T Consensus 200 ~~~~~~~~~~~~~~~~~~g~~~~~al~~~~~~~-~~i~Ii~dGGIr~g~Dv~KALalGAdaV~iGr~~l~~~~-~G~~gv 277 (310)
T d1vcfa1 200 VEEWVRFGEVRHPELCEIGIPTARAILEVREVL-PHLPLVASGGVYTGTDGAKALALGADLLAVARPLLRPAL-EGAERV 277 (310)
T ss_dssp HHHTC--------CCTTCSCBHHHHHHHHHHHC-SSSCEEEESSCCSHHHHHHHHHHTCSEEEECGGGHHHHT-TCHHHH
T ss_pred cccccccCchhhhhhhhcchHHHHHHHHHHhhc-CCCeEEeCCCCCchHHHHHHHHhCCCEeeEhHHHHHHhc-cCHHHH
Confidence 34577888999988765 479999999999999999999999999999999999755 589999
Q ss_pred HHHHHHHHHHHHHHHHHcCCCChhhhcccc
Q 017781 321 RRVLEMLREEFELAMALSGCRSLKEITRDH 350 (366)
Q Consensus 321 ~~~~~~l~~el~~~m~~~G~~~l~el~~~~ 350 (366)
+++++.|++||+.+|.++|+++++||+++.
T Consensus 278 ~~~l~~l~~El~~~m~~~G~~~i~el~g~~ 307 (310)
T d1vcfa1 278 AAWIGDYLEELRTALFAIGARNPKEARGRV 307 (310)
T ss_dssp HHHHHHHHHHHHHHHHHHTCSSGGGGTTCE
T ss_pred HHHHHHHHHHHHHHHHHhCCCCHHHHhhhh
Confidence 999999999999999999999999998653
|
| >d1eepa_ c.1.5.1 (A:) Inosine monophosphate dehydrogenase (IMPDH) {Lyme disease spirochete (Borrelia burgdorferi) [TaxId: 139]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Inosine monophosphate dehydrogenase (IMPDH) family: Inosine monophosphate dehydrogenase (IMPDH) domain: Inosine monophosphate dehydrogenase (IMPDH) species: Lyme disease spirochete (Borrelia burgdorferi) [TaxId: 139]
Probab=99.94 E-value=1.4e-25 Score=218.91 Aligned_cols=252 Identities=19% Similarity=0.261 Sum_probs=175.0
Q ss_pred cccceeeecccc-CCCCCCccceeE-cCcccCCceEecccccccccCChhhHHHHHHHHHcCCceecCCCCCCCHHHHhc
Q 017781 42 AFSRILFRPRIL-IDVSKIDMNTTV-LGFKISMPIMIAPTAMQKMAHPEGEYATARAASAAGTIMTLSSWSTSSVEEVAS 119 (366)
Q Consensus 42 ~f~~i~l~pr~l-~~~~~vd~st~l-~g~~l~~Pi~iApm~~~~l~~~~~e~~la~aa~~~G~~~~vs~~~~~~~e~i~~ 119 (366)
.|||+.|+|..- ...+++||+++| .+.++..||+.|||...+ +..+|.+.+++|...+++ -++++|+..+
T Consensus 9 tfDDVlLvP~~st~~~~~vdl~~~~t~~~~l~iPIisA~MDtVt------~~~mAi~ma~~GGlgVih--r~~~ie~q~~ 80 (388)
T d1eepa_ 9 TFDDVSLIPRKSSVLPSEVSLKTQLTKNISLNIPFLSSAMDTVT------ESQMAIAIAKEGGIGIIH--KNMSIEAQRK 80 (388)
T ss_dssp CGGGEEECCCCCCSCGGGCCCCEESSSSCEESSSEEECCCTTTC------SHHHHHHHHHHTSEEEEC--SSSCHHHHHH
T ss_pred CcccEEEeCCCCCCCHHHceeeEEeeCCEecCCCEEecCCCCCC------CHHHHHHHHHCCCEEEEe--CCCCHHHHHH
Confidence 599999999654 355789999999 578999999999995433 789999999999999995 3456665432
Q ss_pred cCC--CceEEEeeecCCH---------------------------------------------------HHHHHHHHHHH
Q 017781 120 TGP--GIRFFQLYVYKDR---------------------------------------------------NVVAQLVRRAE 146 (366)
Q Consensus 120 ~~~--~~~~~Qly~~~d~---------------------------------------------------~~~~~~l~ra~ 146 (366)
... ..+-++.....+. +...+.++.+.
T Consensus 81 ~v~~Vk~~~~~~~~~~~~d~~~~~~~~~t~~~~~~~~~a~~d~~~~~~~p~~~~d~~~~l~vgaAvg~~~~~~~ra~~L~ 160 (388)
T d1eepa_ 81 EIEKVKTYKFQKTINTNGDTNEQKPEIFTAKQHLEKSDAYKNAEHKEDFPNACKDLNNKLRVGAAVSIDIDTIERVEELV 160 (388)
T ss_dssp HHHHHHTCC--------------------------------------CCTTCCBCTTSCBCCEEEECSCTTHHHHHHHHH
T ss_pred HHHHhhhccccccccccCccccccchhhhhhhhhhhhHHHHhHHHHhhhhHHHhhhhccchhhhccCCCHHHHHHHHHHH
Confidence 100 0000000000000 00111222222
Q ss_pred HcCCCEEEEecCCCCCcchhHHHhhhcCCCCccccccccccccCCCccccchhhHHHhhhccCCCCCHHHHHHHHHhc-C
Q 017781 147 RAGFKAIALTVDTPRLGRREADIKNRFTLPPFLTLKNFQGLDLGKMDEANDSGLAAYVAGQIDRSLSWKDVKWLQTIT-K 225 (366)
Q Consensus 147 ~~G~~ai~vtvd~p~~g~r~~d~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~i~~lr~~~-~ 225 (366)
++|++.++|. +.+ ++.....+.++++|+.. +
T Consensus 161 ~aG~D~ivID--~Ah----------------------------------------------G~s~~~~~~i~~ik~~~~~ 192 (388)
T d1eepa_ 161 KAHVDILVID--SAH----------------------------------------------GHSTRIIELIKKIKTKYPN 192 (388)
T ss_dssp HTTCSEEEEC--CSC----------------------------------------------CSSHHHHHHHHHHHHHCTT
T ss_pred hhccceeeee--ccc----------------------------------------------cchHHHHHHHHHHHHHCCC
Confidence 3333333331 100 11112346789999877 7
Q ss_pred CCEEEEeccCHHH----HHcCCcEEEEcCCCcc------CCCCCcchHHHHHHHHHHcCC-CceEEEecCCCCHHHHHHH
Q 017781 226 LPILVKGVLTAED----VQAGAAGIIVSNHGAR------QLDYVPATIMALEEVVKATQG-RIPVFLDGGVRRGTDVFKA 294 (366)
Q Consensus 226 ~pv~vK~v~~~~d----~~aGad~I~vs~~gg~------~~~~~~~~~~~l~~i~~~~~~-~i~vi~~GGI~~~~dv~ka 294 (366)
+||++.++.|.+. .++|||+|.|.-.+|. ....|.|.+.++.++.++..+ .+|||+||||+++.|++||
T Consensus 193 v~vIaGNV~T~e~a~~L~~~GaD~VkVGiGpGs~CtTr~~~GvG~pq~sai~~~~~~~~~~~vpiIADGGi~~~Gdi~KA 272 (388)
T d1eepa_ 193 LDLIAGNIVTKEAALDLISVGADCLKVGIGPGSICTTRIVAGVGVPQITAICDVYEACNNTNICIIADGGIRFSGDVVKA 272 (388)
T ss_dssp CEEEEEEECSHHHHHHHHTTTCSEEEECSSCSTTSHHHHHHCCCCCHHHHHHHHHHHHTTSSCEEEEESCCCSHHHHHHH
T ss_pred CceeeccccCHHHHHHHHhcCCCeeeeccccccccccccccccCcchHHHHHHHHHHhccCCceEEeccccCcCCceeee
Confidence 9999999999886 9999999999865553 135678999999999887654 7999999999999999999
Q ss_pred HHhCcCEEEecHHHH--------------------HHhhhc----------------------CHHH----------HHH
Q 017781 295 LALGASGIFIGRPVV--------------------YSLAAE----------------------GEKG----------VRR 322 (366)
Q Consensus 295 lalGAd~V~igr~~l--------------------~~l~~~----------------------G~~g----------v~~ 322 (366)
|++|||+||+|++|- |+++.. .+|| +++
T Consensus 273 la~GAd~VMlG~~lAg~~Espg~~~~~~g~~~k~~~gm~S~~a~~~g~~~~~~~~~~~~~~~~~~EG~~~~v~~~G~~~~ 352 (388)
T d1eepa_ 273 IAAGADSVMIGNLFAGTKESPSEEIIYNGKKFKSYVGMGSISAMKRGSKSRYFQLENNEPKKLVPEGIEGMVPYSGKLKD 352 (388)
T ss_dssp HHHTCSEEEECHHHHTBTTSSSCEEEETTEEEEC------------------------------------CEECCBCHHH
T ss_pred EEeccceeecchhhhcccCCCceEEEeCCcEeecccccccHHHHhccccccccccccccccccccCceEEEeCCCCCHHH
Confidence 999999999999983 221110 0122 678
Q ss_pred HHHHHHHHHHHHHHHcCCCChhhhccc
Q 017781 323 VLEMLREEFELAMALSGCRSLKEITRD 349 (366)
Q Consensus 323 ~~~~l~~el~~~m~~~G~~~l~el~~~ 349 (366)
++..|...|+..|.++|+.+|+||+..
T Consensus 353 ~~~~l~gglrs~m~y~Ga~~l~e~~~~ 379 (388)
T d1eepa_ 353 ILTQLKGGLMSGMGYLGAATISDLKIN 379 (388)
T ss_dssp HHHHHHHHHHHHHHHHTCSSHHHHHHS
T ss_pred HHHHHHHHHHHHhhccCcccHHHHhhC
Confidence 899999999999999999999999854
|
| >d1vrda1 c.1.5.1 (A:1-85,A:213-457) Inosine monophosphate dehydrogenase (IMPDH) {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Inosine monophosphate dehydrogenase (IMPDH) family: Inosine monophosphate dehydrogenase (IMPDH) domain: Inosine monophosphate dehydrogenase (IMPDH) species: Thermotoga maritima [TaxId: 2336]
Probab=99.92 E-value=8.9e-24 Score=201.76 Aligned_cols=249 Identities=21% Similarity=0.311 Sum_probs=180.3
Q ss_pred cccceeeecccc-CCCCCCccceeEc-CcccCCceEecccccccccCChhhHHHHHHHHHcCCceecCCCCCCCHHHHhc
Q 017781 42 AFSRILFRPRIL-IDVSKIDMNTTVL-GFKISMPIMIAPTAMQKMAHPEGEYATARAASAAGTIMTLSSWSTSSVEEVAS 119 (366)
Q Consensus 42 ~f~~i~l~pr~l-~~~~~vd~st~l~-g~~l~~Pi~iApm~~~~l~~~~~e~~la~aa~~~G~~~~vs~~~~~~~e~i~~ 119 (366)
.|||+.|+|... ....++|++|+|. ...+..||+.|||...+ +..+|.+.+++|...+++.. .+.++..+
T Consensus 6 tfdDVllvP~~s~~~sr~vdl~t~lt~~l~~~iPIIaa~MdtV~------~~~mA~als~~GGlGvi~r~--~~~e~~~~ 77 (330)
T d1vrda1 6 TFDDVLLVPQYSEVLPKDVKIDTRLTRQIRINIPLVSAAMDTVT------EAALAKALAREGGIGIIHKN--LTPDEQAR 77 (330)
T ss_dssp CGGGEEECCCCCCCCGGGSCCCEESSSSCEESSSEEECCCTTTC------SHHHHHHHHTTTCEEEECSS--SCHHHHHH
T ss_pred ccccEEEeCCCCCcccccceEEEEEecCcccCCCEEeCCCCCcC------CHHHHHHHHHCCCeEEeecc--cchhhhHH
Confidence 699999999865 2345799999986 56889999999996543 77999999999999999653 34444322
Q ss_pred ----c--CCCceEEEeeecCCHHHHHHHHHHHHHcCCCEEEEecCCCCCcchhHHHhhhcCCCCccccccccccccCCCc
Q 017781 120 ----T--GPGIRFFQLYVYKDRNVVAQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLTLKNFQGLDLGKMD 193 (366)
Q Consensus 120 ----~--~~~~~~~Qly~~~d~~~~~~~l~ra~~~G~~ai~vtvd~p~~g~r~~d~~~~~~~p~~~~~~~~~~~~~~~~~ 193 (366)
. .......-+ .-+++ ..+.++.+.++|++.++|++-. +
T Consensus 78 ~i~~vk~~~~~v~~~v--gv~~~-~~e~~~~li~agvd~ivId~A~------------G--------------------- 121 (330)
T d1vrda1 78 QVSIVKKTRLLVGAAV--GTSPE-TMERVEKLVKAGVDVIVIDTAH------------G--------------------- 121 (330)
T ss_dssp HHHHHHTCCBCCEEEE--CSSTT-HHHHHHHHHHTTCSEEEECCSC------------C---------------------
T ss_pred HHHHHhhhccEEEEEE--ecCHH-HHHHHHHHHHCCCCEEEEecCC------------C---------------------
Confidence 1 111122222 22333 3356667778899988774321 1
Q ss_pred cccchhhHHHhhhccCCCCCHHHHHHHHHhc-CCCEEEEeccCHHH----HHcCCcEEEEcCCCccC------CCCCcch
Q 017781 194 EANDSGLAAYVAGQIDRSLSWKDVKWLQTIT-KLPILVKGVLTAED----VQAGAAGIIVSNHGARQ------LDYVPAT 262 (366)
Q Consensus 194 ~~~~~~~~~~~~~~~d~~~~~~~i~~lr~~~-~~pv~vK~v~~~~d----~~aGad~I~vs~~gg~~------~~~~~~~ 262 (366)
++....+.++++|+.. ++||++..+.+.+. .++|||+|.|...+|.. ...+.|.
T Consensus 122 ---------------~~~~~~~~ik~ik~~~~~~~viaGnV~t~~~a~~l~~~GaD~v~VGig~Gs~ctt~~~~G~g~p~ 186 (330)
T d1vrda1 122 ---------------HSRRVIETLEMIKADYPDLPVVAGNVATPEGTEALIKAGADAVKVGVGPGSICTTRVVAGVGVPQ 186 (330)
T ss_dssp ---------------SSHHHHHHHHHHHHHCTTSCEEEEEECSHHHHHHHHHTTCSEEEECSSCSTTCHHHHHHCCCCCH
T ss_pred ---------------CchhHHHHHHHHHHhCCCCCEEeechhHHHHHHHHHHcCCCEEeeccccCccccccceecccccc
Confidence 1111235688888876 69999999998876 79999999996544421 2346678
Q ss_pred HHHHHHHHHHcCC-CceEEEecCCCCHHHHHHHHHhCcCEEEecHHHHHHhhhc--------------------------
Q 017781 263 IMALEEVVKATQG-RIPVFLDGGVRRGTDVFKALALGASGIFIGRPVVYSLAAE-------------------------- 315 (366)
Q Consensus 263 ~~~l~~i~~~~~~-~i~vi~~GGI~~~~dv~kalalGAd~V~igr~~l~~l~~~-------------------------- 315 (366)
+.++.++.++... ++|||+||||+++.|++|||++|||+||+|++|.-.-.+.
T Consensus 187 ~sai~~~~~~~~~~~vpvIAdGGi~~~gdiakAla~GAd~Vm~Gs~fa~~~E~pg~~~~~~g~~~k~~~g~~s~~~~~~~ 266 (330)
T d1vrda1 187 LTAVMECSEVARKYDVPIIADGGIRYSGDIVKALAAGAESVMVGSIFAGTEEAPGETILYQGRKYKAYRGMGSLGAMRSG 266 (330)
T ss_dssp HHHHHHHHHHHHTTTCCEEEESCCCSHHHHHHHHHTTCSEEEESHHHHTBTTSSSEEEEETTEEEEECBCCC--------
T ss_pred chhHHHHHHHHHhcCceEEecCCcccCCchheeeeccCceeeecchheeecccCccEEEECCceeeeccccccccccccC
Confidence 8877777665432 7999999999999999999999999999999985321110
Q ss_pred -------------CHHH----------HHHHHHHHHHHHHHHHHHcCCCChhhhccc
Q 017781 316 -------------GEKG----------VRRVLEMLREEFELAMALSGCRSLKEITRD 349 (366)
Q Consensus 316 -------------G~~g----------v~~~~~~l~~el~~~m~~~G~~~l~el~~~ 349 (366)
-++| +.++++.|...|+..|.++|+++|+||++.
T Consensus 267 ~~~~~~~~~~~~~~~eG~~~~v~~~g~~~~~~~~l~gglrs~~~y~G~~~l~~~~~~ 323 (330)
T d1vrda1 267 SADRYGQEGENKFVPEGIEGMVPYKGTVKDVVHQLVGGLRSGMGYIGARTIKELQEK 323 (330)
T ss_dssp -----------------CBCCEECCBCHHHHHHHHHHHHHHHHHHHTCSSHHHHHHH
T ss_pred chhhccccccccccCCCcEEecCCCCCHHHHHHHHHHHHHHHHhhcCcchHHHHhcC
Confidence 0122 788999999999999999999999999875
|
| >d1zfja1 c.1.5.1 (A:2-94,A:221-492) Inosine monophosphate dehydrogenase (IMPDH) {Streptococcus pyogenes [TaxId: 1314]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Inosine monophosphate dehydrogenase (IMPDH) family: Inosine monophosphate dehydrogenase (IMPDH) domain: Inosine monophosphate dehydrogenase (IMPDH) species: Streptococcus pyogenes [TaxId: 1314]
Probab=99.92 E-value=2.8e-24 Score=207.36 Aligned_cols=251 Identities=18% Similarity=0.234 Sum_probs=182.7
Q ss_pred cccceeeecccc-CCCCCCccceeEc-CcccCCceEecccccccccCChhhHHHHHHHHHcCCceecCCCCCCCHHHHhc
Q 017781 42 AFSRILFRPRIL-IDVSKIDMNTTVL-GFKISMPIMIAPTAMQKMAHPEGEYATARAASAAGTIMTLSSWSTSSVEEVAS 119 (366)
Q Consensus 42 ~f~~i~l~pr~l-~~~~~vd~st~l~-g~~l~~Pi~iApm~~~~l~~~~~e~~la~aa~~~G~~~~vs~~~~~~~e~i~~ 119 (366)
.||||.|+|... .+.+++|++++|. ...+..||+.|||... ++..+|.+..++|...++.-. .+.++..+
T Consensus 13 ~fdDVllvP~~st~~s~~vdl~~~it~~~~~~iPIIsA~MDtV------~~~~mA~~ls~~Gglgvlhr~--~~~~e~~~ 84 (365)
T d1zfja1 13 TFDDVLLIPAESHVLPNEVDLKTKLADNLTLNIPIITAAMDTV------TGSKMAIAIARAGGLGVIHKN--MSITEQAE 84 (365)
T ss_dssp CGGGEEECCCCCCSCGGGCCCCEEEETTEEESSSEEECCCTTT------CSHHHHHHHHHTTCEEEECCS--SCHHHHHH
T ss_pred CcceEEEeCCCCCcCHhHceeeEEeeCCcccCCCEEECCCCCc------CCHHHHHHHHHCCCceEEcCc--cCHHHHHH
Confidence 699999999654 4557999999995 5799999999999543 377999999999999999643 44554432
Q ss_pred cC------CCceEEEeeecCCHHHHHHHHHHHHHcCCCEEEEecCCCCCcchhHHHhhhcCCCCccccccccccccCCCc
Q 017781 120 TG------PGIRFFQLYVYKDRNVVAQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLTLKNFQGLDLGKMD 193 (366)
Q Consensus 120 ~~------~~~~~~Qly~~~d~~~~~~~l~ra~~~G~~ai~vtvd~p~~g~r~~d~~~~~~~p~~~~~~~~~~~~~~~~~ 193 (366)
.. .....+..-.....+. .+.++.+.++|++.|+|+ .. +++
T Consensus 85 ~~~~~~~~~~~~~v~aavGv~~~~-~er~~~l~~agvd~ivID--~A----------~G~-------------------- 131 (365)
T d1zfja1 85 EVRKVKRSEGRLLVAAAVGVTSDT-FERAEALFEAGADAIVID--TA----------HGH-------------------- 131 (365)
T ss_dssp HHHHHHHHTSCBCCEEEECSSTTH-HHHHHHHHHHTCSEEEEC--CS----------CTT--------------------
T ss_pred HhhhhhhccCceEEEEEeccCchH-HHHHHHHHHcCCCEEEEE--CC----------ccc--------------------
Confidence 10 1112222222222222 345666667899998773 22 111
Q ss_pred cccchhhHHHhhhccCCCCCHHHHHHHHHhc-CCCEEEEeccCHHH----HHcCCcEEEEcCCCcc------CCCCCcch
Q 017781 194 EANDSGLAAYVAGQIDRSLSWKDVKWLQTIT-KLPILVKGVLTAED----VQAGAAGIIVSNHGAR------QLDYVPAT 262 (366)
Q Consensus 194 ~~~~~~~~~~~~~~~d~~~~~~~i~~lr~~~-~~pv~vK~v~~~~d----~~aGad~I~vs~~gg~------~~~~~~~~ 262 (366)
.....+.++++|+.. ++||++-.+.+.+. .++|||+|.|...+|. +...+.|.
T Consensus 132 ----------------s~~~~~~i~~ik~~~~~~~iIaGNV~T~e~a~~L~~aGaD~VkVGiG~Gs~CTTr~~tGvGvPq 195 (365)
T d1zfja1 132 ----------------SAGVLRKIAEIRAHFPNRTLIAGNIATAEGARALYDAGVDVVKVGIGPGSICTTRVVAGVGVPQ 195 (365)
T ss_dssp ----------------CHHHHHHHHHHHHHCSSSCEEEEEECSHHHHHHHHHTTCSEEEECSSCCTTBCHHHHTCCCCCH
T ss_pred ----------------ccchhHHHHHHHhhCCCcceeecccccHHHHHHHHhcCCceEEeeecccccccCcceeeeeccc
Confidence 111234678888877 68999999999876 9999999999765553 13457889
Q ss_pred HHHHHHHHHHcC-CCceEEEecCCCCHHHHHHHHHhCcCEEEecHHHHH--------------------Hhhh-------
Q 017781 263 IMALEEVVKATQ-GRIPVFLDGGVRRGTDVFKALALGASGIFIGRPVVY--------------------SLAA------- 314 (366)
Q Consensus 263 ~~~l~~i~~~~~-~~i~vi~~GGI~~~~dv~kalalGAd~V~igr~~l~--------------------~l~~------- 314 (366)
++++.+++++.. ..+|||+||||+++.|++|||++|||+||+|++|.- +++.
T Consensus 196 ~sai~~~~~~~~~~~~~iIADGGi~~~GDi~KAla~GAd~VMlG~~lAg~~EsPG~~~~~~g~~~k~~~Gm~s~~a~~~~ 275 (365)
T d1zfja1 196 VTAIYDAAAVAREYGKTIIADGGIKYSGDIVKALAAGGNAVMLGSMFAGTDEAPGETEIYQGRKYKTYRGMGSIAAMKKG 275 (365)
T ss_dssp HHHHHHHHHHHHHTTCEEEEESCCCSHHHHHHHHHTTCSEEEESTTTTTBSSCCCCEEEETTEEEEEEECTTSHHHHCC-
T ss_pred hhHHHHHHHHHHhCCceEEecCCcCcchhhhhhhhccCCEEEecchhccccCCCCcEEEECCeEeeecCCcccHhhhhcc
Confidence 999988876543 268999999999999999999999999999998831 1110
Q ss_pred ------------------cCH-------HHHHHHHHHHHHHHHHHHHHcCCCChhhhccc
Q 017781 315 ------------------EGE-------KGVRRVLEMLREEFELAMALSGCRSLKEITRD 349 (366)
Q Consensus 315 ------------------~G~-------~gv~~~~~~l~~el~~~m~~~G~~~l~el~~~ 349 (366)
+|. ..+.+.+..|...|+..|.++|+++|+||++.
T Consensus 276 ~~~r~~~~~~~~~~~~~~eG~~~~v~~~G~~~~~~~~l~gglrs~m~y~G~~~l~e~~~~ 335 (365)
T d1zfja1 276 SSDRYFQGSVNEANKLVPEGIEGRVAYKGAASDIVFQMLGGIRSGMGYVGAGDIQELHEN 335 (365)
T ss_dssp -------------CCCCCSBCEEEEECCBCHHHHHHHHHHHHHHHHHHTTCSSHHHHHHH
T ss_pred cccccccccccccccccccCceEEeccCCCHHHHHHHHHHHHHHHHhhcCCCcHHHHhhC
Confidence 000 02678899999999999999999999999864
|
| >d1jr1a1 c.1.5.1 (A:17-112,A:233-514) Inosine monophosphate dehydrogenase (IMPDH) {Chinese hamster (Cricetulus griseus) [TaxId: 10029]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Inosine monophosphate dehydrogenase (IMPDH) family: Inosine monophosphate dehydrogenase (IMPDH) domain: Inosine monophosphate dehydrogenase (IMPDH) species: Chinese hamster (Cricetulus griseus) [TaxId: 10029]
Probab=99.91 E-value=2.4e-24 Score=209.09 Aligned_cols=250 Identities=19% Similarity=0.265 Sum_probs=180.2
Q ss_pred cccceeeecccc-CCCCCCccceeE-cCcccCCceEecccccccccCChhhHHHHHHHHHcCCceecCCCCCCCHHHHhc
Q 017781 42 AFSRILFRPRIL-IDVSKIDMNTTV-LGFKISMPIMIAPTAMQKMAHPEGEYATARAASAAGTIMTLSSWSTSSVEEVAS 119 (366)
Q Consensus 42 ~f~~i~l~pr~l-~~~~~vd~st~l-~g~~l~~Pi~iApm~~~~l~~~~~e~~la~aa~~~G~~~~vs~~~~~~~e~i~~ 119 (366)
.|||+.|+|..- .+..++|++|+| ....+..||+-|||...+ +..+|.+.+++|...+++. ..++|+..+
T Consensus 15 tfdDVllvP~~st~~sr~V~l~t~lt~~~~l~iPIIsApMdtVt------~~~mA~als~~GGLGvLhr--~~~~e~~~~ 86 (378)
T d1jr1a1 15 TYNDFLILPGYIDFTADQVDLTSALTKKITLKTPLVSSPMDTVT------EAGMAIAMALTGGIGFIHH--NCTPEFQAN 86 (378)
T ss_dssp CGGGEEECCCCCCSCGGGCBCCEESSSSCEESSCEEECCCTTTC------SHHHHHHHHHHTCEEEECC--SSCHHHHHH
T ss_pred CcccEEEeCCCCCCcHHHceeeeEEECCccCCCCEEECCCCCcC------CHHHHHHHHHCCCeeEEcC--CCCHHHHHH
Confidence 499999999754 345689999999 567899999999996533 7799999999999999965 445554432
Q ss_pred -------cCCCceEE-----Eee----ecCCHHHHHHHHHHHHHcCCCEEEEecCCCCCcchhHHHhhhcCCCCcccccc
Q 017781 120 -------TGPGIRFF-----QLY----VYKDRNVVAQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLTLKN 183 (366)
Q Consensus 120 -------~~~~~~~~-----Qly----~~~d~~~~~~~l~ra~~~G~~ai~vtvd~p~~g~r~~d~~~~~~~p~~~~~~~ 183 (366)
....|... ++. .+.. +...+.++...++|++.+++++-.+.
T Consensus 87 ev~~v~~~~~~p~~~~~~~~~l~v~aavg~~-~~~~~~~~~l~~agv~vi~id~a~g~---------------------- 143 (378)
T d1jr1a1 87 EVRKVKKYEQYPLASKDAKKQLLCGAAIGTH-EDDKYRLDLLALAGVDVVVLDSSQGN---------------------- 143 (378)
T ss_dssp HHHHHHTSCCCTTCCBCTTSCBCCEEEECSS-THHHHHHHHHHHHTCCEEEECCSSCC----------------------
T ss_pred HHheehhhhhCcccccccccCEEEEEEeccC-HHHHHHHHHHHhhccceEeeeccCcc----------------------
Confidence 11111100 111 1111 22233455566788888776432110
Q ss_pred ccccccCCCccccchhhHHHhhhccCCCCCHHHHHHHHHhc-CCCEEEEeccCHHH----HHcCCcEEEEcCCCccC---
Q 017781 184 FQGLDLGKMDEANDSGLAAYVAGQIDRSLSWKDVKWLQTIT-KLPILVKGVLTAED----VQAGAAGIIVSNHGARQ--- 255 (366)
Q Consensus 184 ~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~i~~lr~~~-~~pv~vK~v~~~~d----~~aGad~I~vs~~gg~~--- 255 (366)
.....+.++++|+.. ++|+++-.+.+++. .++|||+|.|...+|..
T Consensus 144 --------------------------~~~~~~~i~~ik~~~~~~~iIaGnVaT~e~a~~L~~aGAD~VkVGiG~Gs~ctT 197 (378)
T d1jr1a1 144 --------------------------SIFQINMIKYMKEKYPNLQVIGGNVVTAAQAKNLIDAGVDALRVGMGCGSICIT 197 (378)
T ss_dssp --------------------------SHHHHHHHHHHHHHSTTCEEEEEEECSHHHHHHHHHHTCSEEEECSSCSTTBCH
T ss_pred --------------------------chhhHHHHHHHHHHCCCCceeecccccHHHHHHHHHhCCCEEeecccccccccc
Confidence 111235678888877 78999999999876 88999999997655432
Q ss_pred ---CCCCcchHHHHHHHHHHcCC-CceEEEecCCCCHHHHHHHHHhCcCEEEecHHHH--------------------HH
Q 017781 256 ---LDYVPATIMALEEVVKATQG-RIPVFLDGGVRRGTDVFKALALGASGIFIGRPVV--------------------YS 311 (366)
Q Consensus 256 ---~~~~~~~~~~l~~i~~~~~~-~i~vi~~GGI~~~~dv~kalalGAd~V~igr~~l--------------------~~ 311 (366)
...|.|.+.++.++.++..+ .+|||+||||+++.|++|||++|||+||+|++|. |+
T Consensus 198 r~~tGvG~pq~sai~~~~~~a~~~~vpIIADGGi~~~gdiakAla~GAd~VMmGs~fAgt~EspG~~~~~~g~~~k~~~g 277 (378)
T d1jr1a1 198 QEVLACGRPQATAVYKVSEYARRFGVPVIADGGIQNVGHIAKALALGASTVMMGSLLAATTEAPGEYFFSDGIRLKKYRG 277 (378)
T ss_dssp HHHHCCCCCHHHHHHHHHHHHGGGTCCEEEESCCCSHHHHHHHHHTTCSEEEESTTTTTBTTSSSCCEESSSCEEEEEEC
T ss_pred ccccccCcccchhhhHHHHhhcccCCceecccccccCCceeeEEEeecceeeecceeeeeecccCccceecCceeeeccc
Confidence 23467888888888776543 7999999999999999999999999999999984 12
Q ss_pred hhh------------------------cCH-------HHHHHHHHHHHHHHHHHHHHcCCCChhhhcc
Q 017781 312 LAA------------------------EGE-------KGVRRVLEMLREEFELAMALSGCRSLKEITR 348 (366)
Q Consensus 312 l~~------------------------~G~-------~gv~~~~~~l~~el~~~m~~~G~~~l~el~~ 348 (366)
++. +|. ..++++++.|...|+..|.++|+++|+||++
T Consensus 278 m~S~~a~~~~~~~~~~~~~~~~~~~~~eG~~~~v~~~G~v~~~~~~l~gglrs~m~y~G~~~l~e~~~ 345 (378)
T d1jr1a1 278 MGSLDAMDKHLSSQNRYFSEADKIKVAQGVSGAVQDKGSIHKFVPYLIAGIQHSCQDIGAKSLTQVRA 345 (378)
T ss_dssp TTSTTTC----------------CCCCCBCEEEEECCBCHHHHHHHHHHHHHHHHHHTTCSBHHHHHH
T ss_pred cchhhhhhcccchhhhhccccccccCCCccEEeeccCCCHHHHHHHHHHHHHHhhhccCcCcHHHHHh
Confidence 211 010 1278899999999999999999999999975
|
| >d1pvna1 c.1.5.1 (A:2-99,A:231-494) Inosine monophosphate dehydrogenase (IMPDH) {Tritrichomonas foetus [TaxId: 5724]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Inosine monophosphate dehydrogenase (IMPDH) family: Inosine monophosphate dehydrogenase (IMPDH) domain: Inosine monophosphate dehydrogenase (IMPDH) species: Tritrichomonas foetus [TaxId: 5724]
Probab=99.91 E-value=4.8e-24 Score=206.15 Aligned_cols=248 Identities=20% Similarity=0.243 Sum_probs=180.8
Q ss_pred cccceeeecccc--CC-CCCCccceeEc--------CcccCCceEecccccccccCChhhHHHHHHHHHcCCceecCCCC
Q 017781 42 AFSRILFRPRIL--ID-VSKIDMNTTVL--------GFKISMPIMIAPTAMQKMAHPEGEYATARAASAAGTIMTLSSWS 110 (366)
Q Consensus 42 ~f~~i~l~pr~l--~~-~~~vd~st~l~--------g~~l~~Pi~iApm~~~~l~~~~~e~~la~aa~~~G~~~~vs~~~ 110 (366)
+|||+.|+|... .. .++|||+++|. +..+..||+-|||... ++..+|.+..++|...++. -
T Consensus 10 tFdDVlLvP~~Sti~s~r~dVdl~~~l~~~~~~~~~~i~l~iPIIsAnMDTV------t~~~mA~~la~~Gglgvih--R 81 (362)
T d1pvna1 10 TFNEYLLIPGLSTVDCIPSNVNLSTPLVKFQKGQQSEINLKIPLVSAIMQSV------SGEKMAIALAREGGISFIF--G 81 (362)
T ss_dssp CGGGEEECCCCBCTTCCGGGCBCCEECSCEETTSCCSCEESSSEEECSCTTT------CSHHHHHHHHHTTCEEEEC--C
T ss_pred CccceEEeCCCCcCCCCccceeeeeEEEeeccccccccccCCcEEecCCCCc------CCHHHHHHHHHCCCEEEEe--e
Confidence 699999999874 33 68999999873 4568899999999533 3789999999999999995 3
Q ss_pred CCCHHHHhcc----CC-CceEEEeeecCCHHHHHHHHHHHHHcCCCEEEEecCCCCCcchhHHHhhhcCCCCcccccccc
Q 017781 111 TSSVEEVAST----GP-GIRFFQLYVYKDRNVVAQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLTLKNFQ 185 (366)
Q Consensus 111 ~~~~e~i~~~----~~-~~~~~Qly~~~d~~~~~~~l~ra~~~G~~ai~vtvd~p~~g~r~~d~~~~~~~p~~~~~~~~~ 185 (366)
.+++|+..+. .. ...........+ ..+.++.+.++|++.++|++- + ++
T Consensus 82 ~~~ie~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~L~~ag~d~i~IDvA--h----------G~------------ 134 (362)
T d1pvna1 82 SQSIESQAAMVHAVKNFRYLVGAGINTRD---FRERVPALVEAGADVLCIDSS--D----------GF------------ 134 (362)
T ss_dssp SSCHHHHHHHHHHHHTCCCCCEEEECSSS---HHHHHHHHHHHTCSEEEECCS--C----------CC------------
T ss_pred cCCHHHHHHHhhhhhhcccccccccchhh---hHHHHHHHhhcCceEEeechh--c----------cc------------
Confidence 4567665431 11 111111111122 233455666789998877432 1 11
Q ss_pred ccccCCCccccchhhHHHhhhccCCCCCHHHHHHHHHhc--CCCEEEEeccCHHH----HHcCCcEEEEcCCCccC----
Q 017781 186 GLDLGKMDEANDSGLAAYVAGQIDRSLSWKDVKWLQTIT--KLPILVKGVLTAED----VQAGAAGIIVSNHGARQ---- 255 (366)
Q Consensus 186 ~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~i~~lr~~~--~~pv~vK~v~~~~d----~~aGad~I~vs~~gg~~---- 255 (366)
.....+.++++|+.. +.||++..+.|.+. .++|+|+|.|.-.+|..
T Consensus 135 ------------------------~~~v~~~i~~ir~~~~~~~~IiAGNVaT~e~~~~L~~aGaD~vkVGIG~Gs~CTTr 190 (362)
T d1pvna1 135 ------------------------SEWQKITIGWIREKYGDKVKVGAGNIVDGEGFRYLADAGADFIKIGIGGGSICITR 190 (362)
T ss_dssp ------------------------BHHHHHHHHHHHHHHGGGSCEEEEEECSHHHHHHHHHHTCSEEEECSSCSTTBCHH
T ss_pred ------------------------hhHHHHHHHHHHHhhccceeeecccccCHHHHHHHHHhCCcEEEecccccccccch
Confidence 011234577776655 58899999999886 99999999998665532
Q ss_pred --CCCCcchHHHHHHHHHHcC-------CCceEEEecCCCCHHHHHHHHHhCcCEEEecHHHH-----------------
Q 017781 256 --LDYVPATIMALEEVVKATQ-------GRIPVFLDGGVRRGTDVFKALALGASGIFIGRPVV----------------- 309 (366)
Q Consensus 256 --~~~~~~~~~~l~~i~~~~~-------~~i~vi~~GGI~~~~dv~kalalGAd~V~igr~~l----------------- 309 (366)
...|.|.++++.+++++.. ..+|||+||||+++.|++|||++|||+||+|+.|-
T Consensus 191 ~~tGvG~Pq~sAv~e~a~~~~~~~~~~~~~v~iiaDGGi~~~gdi~KAla~GAd~VM~G~~lAg~~Espg~~~~~~g~~~ 270 (362)
T d1pvna1 191 EQKGIGRGQATAVIDVVAERNKYFEETGIYIPVCSDGGIVYDYHMTLALAMGADFIMLGRYFARFEESPTRKVTINGSVM 270 (362)
T ss_dssp HHTCBCCCHHHHHHHHHHHHHHHHHHHSEECCEEEESCCCSHHHHHHHHHTTCSEEEESHHHHTBTTSSSCEEEETTEEE
T ss_pred hhhccCCchHHHHHHHHHHHHHhhhhcccCCceeeccccCcccceeEEEEEeccceeehhhhhcccccCCcceeecccee
Confidence 3457889999999876532 25899999999999999999999999999999883
Q ss_pred ---HHhhh--------------------cCH-------HHHHHHHHHHHHHHHHHHHHcCCCChhhhcc
Q 017781 310 ---YSLAA--------------------EGE-------KGVRRVLEMLREEFELAMALSGCRSLKEITR 348 (366)
Q Consensus 310 ---~~l~~--------------------~G~-------~gv~~~~~~l~~el~~~m~~~G~~~l~el~~ 348 (366)
|+++. +|. ..+++++..|...|+..|.++|+++|+||+.
T Consensus 271 k~~~Gm~S~~a~~~~~~~~~~~~~~~~~eG~~~~v~~~g~~~~~~~~l~gglrs~~~y~G~~~l~~~~~ 339 (362)
T d1pvna1 271 KEYWGEGSSRARNWQRYDLGGKQKLSFEEGVDSYVPYAGKLKDNVEASLNKVKSTMCNCGALTIPQLQS 339 (362)
T ss_dssp EEEECTTSTTTCCGGGGCSSSCSSCSSCCBCEEEEECCBCHHHHHHHHHHHHHHHHHHTTCSBHHHHHH
T ss_pred eeeeccccccccccccccccccccccCCCCcEEEeccCCCHHHHHHHHHHHHHHHHhhcCcCcHHHHHh
Confidence 22221 011 1488999999999999999999999999985
|
| >d2cu0a1 c.1.5.1 (A:3-96,A:207-480) Inosine monophosphate dehydrogenase (IMPDH) {Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Inosine monophosphate dehydrogenase (IMPDH) family: Inosine monophosphate dehydrogenase (IMPDH) domain: Inosine monophosphate dehydrogenase (IMPDH) species: Pyrococcus horikoshii [TaxId: 53953]
Probab=99.90 E-value=1.5e-23 Score=202.93 Aligned_cols=248 Identities=20% Similarity=0.287 Sum_probs=181.6
Q ss_pred cccceeeecccc-CCCCCCccceeEc-CcccCCceEecccccccccCChhhHHHHHHHHHcCCceecCCCCCCCHHHHhc
Q 017781 42 AFSRILFRPRIL-IDVSKIDMNTTVL-GFKISMPIMIAPTAMQKMAHPEGEYATARAASAAGTIMTLSSWSTSSVEEVAS 119 (366)
Q Consensus 42 ~f~~i~l~pr~l-~~~~~vd~st~l~-g~~l~~Pi~iApm~~~~l~~~~~e~~la~aa~~~G~~~~vs~~~~~~~e~i~~ 119 (366)
.|||+.|+|..- .+..+|||+++|. +.++..||+.|||-.. ++..+|.+.+++|...++.- .+++|+..+
T Consensus 14 tfdDVlLvP~~sti~srdVdls~~~~~~~~l~iPIiss~MDtV------~~~~mA~~la~~Gglgvlhr--~~~~e~~~~ 85 (368)
T d2cu0a1 14 TFDDVLLIPQATEVEPKDVDVSTRITPNVKLNIPILSAAMDTV------TEWEMAVAMAREGGLGVIHR--NMGIEEQVE 85 (368)
T ss_dssp CGGGEEECCCCCSSCSTTCBCCEEEETTEEESSSEEECCCTTT------CSHHHHHHHHHTTCEEEECS--SSCHHHHHH
T ss_pred CcccEEEeCCCCcCchhhceeeEEeeCCcccCCCEEeCCCCCc------CCHHHHHHHHHCCCeeEecc--cCCHHHHHH
Confidence 799999999764 3445899999997 5799999999999543 37789999999999999964 345654322
Q ss_pred c---------CC-------CceEEEeeecCCHHHHHHHHHHHHHcCCCEEEEecCCCCCcchhHHHhhhcCCCCcccccc
Q 017781 120 T---------GP-------GIRFFQLYVYKDRNVVAQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLTLKN 183 (366)
Q Consensus 120 ~---------~~-------~~~~~Qly~~~d~~~~~~~l~ra~~~G~~ai~vtvd~p~~g~r~~d~~~~~~~p~~~~~~~ 183 (366)
. .+ ....+-... .++. .+.+..+.++|++.|+|++-. ++
T Consensus 86 ~v~~v~~~e~~~~~~~d~~~~~~v~~~~--~~~~-~~r~~~l~~aGvd~ivID~A~------------Gh---------- 140 (368)
T d2cu0a1 86 QVKRVKRAEKYKNAVRDENGELLVAAAV--SPFD-IKRAIELDKAGVDVIVVDTAH------------AH---------- 140 (368)
T ss_dssp HHHHHHTCCCCTTCCBCTTSCBCCEEEE--CTTC-HHHHHHHHHTTCSEEEEECSC------------CC----------
T ss_pred HHHhhhhhhhccccccccCccEEEEecc--ChHH-HHHHHHHHHcCCCEEEecCcc------------cc----------
Confidence 1 11 011111111 1111 233445667899998875321 11
Q ss_pred ccccccCCCccccchhhHHHhhhccCCCCCHHHHHHHHHhcCCCEEEEeccCHHH--HHcCCcEEEEcCCCccC------
Q 017781 184 FQGLDLGKMDEANDSGLAAYVAGQIDRSLSWKDVKWLQTITKLPILVKGVLTAED--VQAGAAGIIVSNHGARQ------ 255 (366)
Q Consensus 184 ~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~i~~lr~~~~~pv~vK~v~~~~d--~~aGad~I~vs~~gg~~------ 255 (366)
.....+.++++|+..+.|+++..+.+.+. ...|||+|.|.-.+|..
T Consensus 141 --------------------------~~~~i~~lK~ir~~~~~~vIaGNVaT~e~~~~l~gaD~VkVGIG~Gs~CTTr~~ 194 (368)
T d2cu0a1 141 --------------------------NLKAIKSMKEMRQKVDADFIVGNIANPKAVDDLTFADAVKVGIGPGSICTTRIV 194 (368)
T ss_dssp --------------------------CHHHHHHHHHHHHTCCSEEEEEEECCHHHHTTCTTSSEEEECSSCSTTBCHHHH
T ss_pred --------------------------hhhhhhhhhhhhhhcccceeeccccCHHHHHhhhcCcceeecccCcccccchhh
Confidence 01123568999999999999999999887 66799999997666642
Q ss_pred CCCCcchHHHHHHHHHHcCC-CceEEEecCCCCHHHHHHHHHhCcCEEEecHHHHH--------------------Hhhh
Q 017781 256 LDYVPATIMALEEVVKATQG-RIPVFLDGGVRRGTDVFKALALGASGIFIGRPVVY--------------------SLAA 314 (366)
Q Consensus 256 ~~~~~~~~~~l~~i~~~~~~-~i~vi~~GGI~~~~dv~kalalGAd~V~igr~~l~--------------------~l~~ 314 (366)
...|.|.++++.++.++..+ .+|||+||||+++.|++|||++|||+||+|++|-- +++.
T Consensus 195 tGvG~Pq~sAi~e~~~~~~~~~~~iiADGGi~~~Gdi~KAla~GAd~VMlG~~lAg~~Espg~~~~~~g~~~k~~~Gm~S 274 (368)
T d2cu0a1 195 AGVGVPQITAVAMVADRAQEYGLYVIADGGIRYSGDIVKAIAAGADAVMLGNLLAGTKEAPGKEVIINGRKYKQYRGMGS 274 (368)
T ss_dssp TCCCCCHHHHHHHHHHHHHHHTCEEEEESCCCSHHHHHHHHHTTCSEEEESTTTTTBTTCCSCEEEETTEEEEEEECTTS
T ss_pred cccccchHHHHHHHHHHHhccCCeeEecCCCCcCChhheeeeeccceeeccchhccccccCCceEeeCCeEcccccCccc
Confidence 34678999999898865432 69999999999999999999999999999998721 1110
Q ss_pred --------------cC--------HH----------HHHHHHHHHHHHHHHHHHHcCCCChhhhcc
Q 017781 315 --------------EG--------EK----------GVRRVLEMLREEFELAMALSGCRSLKEITR 348 (366)
Q Consensus 315 --------------~G--------~~----------gv~~~~~~l~~el~~~m~~~G~~~l~el~~ 348 (366)
.+ ++ .++++++.|...|+..|.++|+++|+||++
T Consensus 275 ~~a~~~~~~~~~~~~~~~~~~~~~~EG~~~~v~~~G~~~~~l~~l~gglrs~m~y~G~~~l~e~~~ 340 (368)
T d2cu0a1 275 LGAMMKGGAERYYQGGYMKTRKFVPEGVEGVVPYRGTVSEVLYQLVGGLKAGMGYVGARNIRELKE 340 (368)
T ss_dssp HHHHTC----------CCCCSCSSCCBCEEEEECCBCHHHHHHHHHHHHHHHHHHTTCSBHHHHHH
T ss_pred ccccccCCcccccccccccccccCCCceEEeeCCCCCHHHHHHHHHHHHHHHHHhcCcccHHHHhh
Confidence 00 12 378899999999999999999999999974
|
| >d1gtea2 c.1.4.1 (A:533-844) Dihydropyrimidine dehydrogenase, domain 4 {Pig (Sus scrofa) [TaxId: 9823]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: FMN-linked oxidoreductases family: FMN-linked oxidoreductases domain: Dihydropyrimidine dehydrogenase, domain 4 species: Pig (Sus scrofa) [TaxId: 9823]
Probab=99.89 E-value=3.6e-22 Score=189.37 Aligned_cols=232 Identities=19% Similarity=0.252 Sum_probs=162.0
Q ss_pred cceeEcCcccCCceEecccccccccCChhhHHHHHHHHHcCCceecC-CCCCC---------------------------
Q 017781 61 MNTTVLGFKISMPIMIAPTAMQKMAHPEGEYATARAASAAGTIMTLS-SWSTS--------------------------- 112 (366)
Q Consensus 61 ~st~l~g~~l~~Pi~iApm~~~~l~~~~~e~~la~aa~~~G~~~~vs-~~~~~--------------------------- 112 (366)
|||+|+|++|++||++|+-.. +.+.+..+.+.++|+++++. |.+..
T Consensus 1 Lsv~~~Gl~l~nPi~~Asg~~------~~~~~~~~~~~~~G~G~vv~ktvt~~~~~~~n~~pr~~~~~~~~~~~~~~~~~ 74 (312)
T d1gtea2 1 ISVEMAGLKFINPFGLASAAP------TTSSSMIRRAFEAGWGFALTKTFSLDKDIVTNVSPRIVRGTTSGPMYGPGQSS 74 (312)
T ss_dssp CCEEETTEEESSSEEECSSGG------GSSHHHHHHHHHHTCSEEECCCBCCGGGCCCCCSSCEEECCTTCSCCSSCCSC
T ss_pred CcEEECCEEcCCCcEECCcCC------CCCHHHHHHHHHcCCcEEEEeeecCCccccCCCCCcEEeccCCcccccccccc
Confidence 689999999999999998432 23678899999999988753 22100
Q ss_pred ----------CHH----HHh---ccCC-CceEEEeeecCCHHHHHHHHHHHHHcCCCEEEEecCCCCCcchhHHHhhhcC
Q 017781 113 ----------SVE----EVA---STGP-GIRFFQLYVYKDRNVVAQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFT 174 (366)
Q Consensus 113 ----------~~e----~i~---~~~~-~~~~~Qly~~~d~~~~~~~l~ra~~~G~~ai~vtvd~p~~g~r~~d~~~~~~ 174 (366)
..+ ++. ...+ .+....+....+.+...+..+.++++|++++.+++.||...... + +.
T Consensus 75 ~~n~~g~~~~g~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~d~~~~a~~~~~~gad~lelN~scPn~~~~~-~----~~ 149 (312)
T d1gtea2 75 FLNIELISEKTAAYWCQSVTELKADFPDNIVIASIMCSYNKNDWMELSRKAEASGADALELNLSCPHGMGER-G----MG 149 (312)
T ss_dssp EEECCCSCSSCHHHHHHHHHHHHHHCTTSEEEEEECCCSCHHHHHHHHHHHHHTTCSEEEEECCCBCCCC----------
T ss_pred ccccccccccchhhhhhhhccccccccccccccccccccchhHHHHHHHHhccCCCCeEeeccCCCCccccc-c----cc
Confidence 011 111 1112 22333444455677677788888899999999999999631100 0 00
Q ss_pred CCCccccccccccccCCCccccchhhHHHhhhccCCCCCHHHHHHHHHhcCCCEEEEeccC---HHH-----HHcCCcEE
Q 017781 175 LPPFLTLKNFQGLDLGKMDEANDSGLAAYVAGQIDRSLSWKDVKWLQTITKLPILVKGVLT---AED-----VQAGAAGI 246 (366)
Q Consensus 175 ~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~i~~lr~~~~~pv~vK~v~~---~~d-----~~aGad~I 246 (366)
... ..++....+.++++|+.+++||++|.... ..+ .++|+|+|
T Consensus 150 ---------------------------~~~--~~~~~~~~~i~~~v~~~~~~pv~vKl~~~~~~~~~i~~~~~~~g~~gi 200 (312)
T d1gtea2 150 ---------------------------LAC--GQDPELVRNICRWVRQAVQIPFFAKLTPNVTDIVSIARAAKEGGADGV 200 (312)
T ss_dssp ---------------------------SBG--GGCHHHHHHHHHHHHHHCSSCEEEEECSCSSCHHHHHHHHHHHTCSEE
T ss_pred ---------------------------hhh--hhhHHHHHHHHHHHhhccCCceeecccccchhHHHHHHHHHHhcccce
Confidence 000 01333344668999999999999997643 333 79999999
Q ss_pred EEcCCC-ccC------------------CC---CCc----chHHHHHHHHHHcCCCceEEEecCCCCHHHHHHHHHhCcC
Q 017781 247 IVSNHG-ARQ------------------LD---YVP----ATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGAS 300 (366)
Q Consensus 247 ~vs~~g-g~~------------------~~---~~~----~~~~~l~~i~~~~~~~i~vi~~GGI~~~~dv~kalalGAd 300 (366)
++.|+. ++. .. +|+ .+++.+.++++.++ ++|||++|||++++|++|+|++|||
T Consensus 201 ~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~gg~sG~~i~~~al~~v~~~~~~~~-~ipIi~~GGI~~~~d~~~~l~aGA~ 279 (312)
T d1gtea2 201 TATNTVSGLMGLKADGTPWPAVGAGKRTTYGGVSGTAIRPIALRAVTTIARALP-GFPILATGGIDSAESGLQFLHSGAS 279 (312)
T ss_dssp EECCCEEECCCBCTTSCBSSCBTTTTBBCCEEEESGGGHHHHHHHHHHHHHHST-TCCEEEESSCCSHHHHHHHHHTTCS
T ss_pred EEEeecccccccccccccccccccccccccccccCcCcchhhHHHHHHHHHHcC-CCcEEEEcCCCCHHHHHHHHHcCCC
Confidence 998863 210 00 122 24677888887774 5999999999999999999999999
Q ss_pred EEEecHHHHHHhhhcCHHHHHHHHHHHHHHHHHHHHHcCCC
Q 017781 301 GIFIGRPVVYSLAAEGEKGVRRVLEMLREEFELAMALSGCR 341 (366)
Q Consensus 301 ~V~igr~~l~~l~~~G~~gv~~~~~~l~~el~~~m~~~G~~ 341 (366)
+|+||+++++ .|+. +++.+.++|+.+|...|++
T Consensus 280 ~Vqv~ta~~~----~G~~----~i~~i~~~L~~~m~~~g~~ 312 (312)
T d1gtea2 280 VLQVCSAVQN----QDFT----VIQDYCTGLKALLYLKSIE 312 (312)
T ss_dssp EEEESHHHHT----SCTT----HHHHHHHHHHHHHHHTTCG
T ss_pred eeEECHhhhc----cChH----HHHHHHHHHHHHHHHcCCC
Confidence 9999999987 3653 6778999999999999873
|
| >d1juba_ c.1.4.1 (A:) Dihydroorotate dehydrogenase {Lactococcus lactis, isozyme A [TaxId: 1358]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: FMN-linked oxidoreductases family: FMN-linked oxidoreductases domain: Dihydroorotate dehydrogenase species: Lactococcus lactis, isozyme A [TaxId: 1358]
Probab=99.87 E-value=7e-21 Score=180.02 Aligned_cols=129 Identities=19% Similarity=0.175 Sum_probs=101.7
Q ss_pred CHHHHHHHHHhcCCCEEEEeccCH--HH--------HHcCCcEEEEcCCCccC-----------C-----CC---Ccc--
Q 017781 213 SWKDVKWLQTITKLPILVKGVLTA--ED--------VQAGAAGIIVSNHGARQ-----------L-----DY---VPA-- 261 (366)
Q Consensus 213 ~~~~i~~lr~~~~~pv~vK~v~~~--~d--------~~aGad~I~vs~~gg~~-----------~-----~~---~~~-- 261 (366)
..+.++++++..+.|+++|..... .+ .+.|++++...|..+.. . .+ +++
T Consensus 146 ~~~~~~~v~~~~~~pv~vKl~p~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~gG~sg~~l~ 225 (311)
T d1juba_ 146 TEKLLKEVFTFFTKPLGVKLPPYFDLVHFDIMAEILNQFPLTYVNSVNSIGNGLFIDPEAESVVIKPKDGFGGIGGAYIK 225 (311)
T ss_dssp HHHHHHHHTTTCCSCEEEEECCCCSHHHHHHHHHHHTTSCCCEEEECCCEEEEECEETTTTEESCSGGGGEEEEESGGGH
T ss_pred HHHHHHHhhcccccceeecccccchhhHHHHHHHHHHhhccceEeccccccccccccccccccccccccccCCccccccC
Confidence 345689999999999999987532 21 67789998877643210 0 01 121
Q ss_pred --hHHHHHHHHHHcCCCceEEEecCCCCHHHHHHHHHhCcCEEEecHHHHHHhhhcCHHHHHHHHHHHHHHHHHHHHHcC
Q 017781 262 --TIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFIGRPVVYSLAAEGEKGVRRVLEMLREEFELAMALSG 339 (366)
Q Consensus 262 --~~~~l~~i~~~~~~~i~vi~~GGI~~~~dv~kalalGAd~V~igr~~l~~l~~~G~~gv~~~~~~l~~el~~~m~~~G 339 (366)
++..+.++++.++.++|||++|||++++|++++|.+|||+|++++++++. |+. +++.+.+||+.+|...|
T Consensus 226 ~~al~~i~~i~~~~~~~~~Iig~GGI~s~~Da~~~i~aGA~~Vql~tal~~~----Gp~----~i~~i~~~L~~~m~~~G 297 (311)
T d1juba_ 226 PTALANVRAFYTRLKPEIQIIGTGGIETGQDAFEHLLCGATMLQIGTALHKE----GPA----IFDRIIKELEEIMNQKG 297 (311)
T ss_dssp HHHHHHHHHHHTTSCTTSEEEEESSCCSHHHHHHHHHHTCSEEEECHHHHHH----CTH----HHHHHHHHHHHHHHHHT
T ss_pred chHHHHHHHHHHhcCCCeeEEecCCcCCHHHHHHHHHcCCCceeeeHhhHhc----ChH----HHHHHHHHHHHHHHHcC
Confidence 34556666666666899999999999999999999999999999999874 654 67889999999999999
Q ss_pred CCChhhhccc
Q 017781 340 CRSLKEITRD 349 (366)
Q Consensus 340 ~~~l~el~~~ 349 (366)
+++++|+++.
T Consensus 298 ~~si~e~~G~ 307 (311)
T d1juba_ 298 YQSIADFHGK 307 (311)
T ss_dssp CCSGGGTTTC
T ss_pred CCCHHHhcCc
Confidence 9999999875
|
| >d1ep3a_ c.1.4.1 (A:) Dihydroorotate dehydrogenase {Lactococcus lactis, isozyme B [TaxId: 1358]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: FMN-linked oxidoreductases family: FMN-linked oxidoreductases domain: Dihydroorotate dehydrogenase species: Lactococcus lactis, isozyme B [TaxId: 1358]
Probab=99.83 E-value=1.2e-20 Score=178.12 Aligned_cols=239 Identities=18% Similarity=0.186 Sum_probs=161.9
Q ss_pred CCCCccceeEcCcccCCceEecccccccccCChhhHHHHHHHHHcCCceec-CCC-------------------------
Q 017781 56 VSKIDMNTTVLGFKISMPIMIAPTAMQKMAHPEGEYATARAASAAGTIMTL-SSW------------------------- 109 (366)
Q Consensus 56 ~~~vd~st~l~g~~l~~Pi~iApm~~~~l~~~~~e~~la~aa~~~G~~~~v-s~~------------------------- 109 (366)
++++.|+|+|+|++|++||++|+- ..+ .+..+.+.+...|+++++ .+.
T Consensus 2 ~~~~~L~~~~~Gl~l~nPi~~aAG-~~~-----~~~~~~~~~~~~g~G~v~~~ti~~~~~~gn~~pr~~~~~~~~~n~~g 75 (311)
T d1ep3a_ 2 TENNRLSVKLPGLDLKNPIIPASG-CFG-----FGEEYAKYYDLNKLGSIMVKATTLHPRFGNPTPRVAETASGMLNAIG 75 (311)
T ss_dssp CCCTTTCEEETTEEESSSEEECTT-SST-----TSTTGGGTSCGGGSSCEEEEEECSSCBCCCCSCCEEEETTEEEECCC
T ss_pred CCCCcceEEECCEEcCCCcEECCC-CCC-----CCHHHHHhhhhcCccEEEEeeEcccccCCCCCCeEeeeccccccccc
Confidence 367889999999999999999962 111 122344445555555442 111
Q ss_pred -CCCCHHHHh--------ccCC-CceEEEeeecCCHHHHHHHHHHHH-HcCCCEEEEecCCCCCcchhHHHhhhcCCCCc
Q 017781 110 -STSSVEEVA--------STGP-GIRFFQLYVYKDRNVVAQLVRRAE-RAGFKAIALTVDTPRLGRREADIKNRFTLPPF 178 (366)
Q Consensus 110 -~~~~~e~i~--------~~~~-~~~~~Qly~~~d~~~~~~~l~ra~-~~G~~ai~vtvd~p~~g~r~~d~~~~~~~p~~ 178 (366)
.+..++.+. +..+ .|...|+. ..+.+...+.+++.. .+|++++.+++.||.... +.
T Consensus 76 ~~~~g~~~~~~~~~~~~~~~~~~~pii~si~-~~~~~~~~~~~~~~~~~~g~d~ielN~~cP~~~~-------~~----- 142 (311)
T d1ep3a_ 76 LQNPGLEVIMTEKLPWLNENFPELPIIANVA-GSEEADYVAVCAKIGDAANVKAIELNISCPNVKH-------GG----- 142 (311)
T ss_dssp CCBCCHHHHHHTHHHHHHHHCTTSCEEEEEC-CSSHHHHHHHHHHHTTSTTEEEEEEECCSEEGGG-------TT-----
T ss_pred ccchhHHHHhhhhhhhhhcccCCCccccccc-chhhhHHHHHHHHHhhcccccccccccCCCcccc-------cc-----
Confidence 111223221 1222 57788886 345555556665553 468999999999984210 00
Q ss_pred cccccccccccCCCccccchhhHHHhhhccCCCCCHHHHHHHHHhcCCCEEEEeccCHHH--------HHcCCcEEEEcC
Q 017781 179 LTLKNFQGLDLGKMDEANDSGLAAYVAGQIDRSLSWKDVKWLQTITKLPILVKGVLTAED--------VQAGAAGIIVSN 250 (366)
Q Consensus 179 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~i~~lr~~~~~pv~vK~v~~~~d--------~~aGad~I~vs~ 250 (366)
. .. ..++....+.++++++..++|+++|......+ .++|+|+++++|
T Consensus 143 ---~--------------------~~--~~~~~~~~~~~~~v~~~~~~p~~vkl~~~~~~~~~~a~~~~~~~~~~~~~~n 197 (311)
T d1ep3a_ 143 ---Q--------------------AF--GTDPEVAAALVKACKAVSKVPLYVKLSPNVTDIVPIAKAVEAAGADGLTMIN 197 (311)
T ss_dssp ---E--------------------EG--GGCHHHHHHHHHHHHHHCSSCEEEEECSCSSCSHHHHHHHHHTTCSEEEECC
T ss_pred ---c--------------------cc--ccCHHHHHHHHHHHHhccCCCeeeeecccccchHHHHHHHHHhhhheeEEEe
Confidence 0 00 01233344567888888899999998754322 789999999998
Q ss_pred CCccC-----------C--C---CCc----chHHHHHHHHHHcCCCceEEEecCCCCHHHHHHHHHhCcCEEEecHHHHH
Q 017781 251 HGARQ-----------L--D---YVP----ATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFIGRPVVY 310 (366)
Q Consensus 251 ~gg~~-----------~--~---~~~----~~~~~l~~i~~~~~~~i~vi~~GGI~~~~dv~kalalGAd~V~igr~~l~ 310 (366)
..+.. . . .|+ .+++.+.++++.+ ++|||++|||++++|+.++|.+|||+|||||.++.
T Consensus 198 ~~~~~~~~~~~~~~~~~~~~~g~sG~~i~~~~l~~i~~i~~~~--~ipIig~GGI~s~~Da~~~i~~GAd~V~ig~~~~~ 275 (311)
T d1ep3a_ 198 TLMGVRFDLKTRQPILANITGGLSGPAIKPVALKLIHQVAQDV--DIPIIGMGGVANAQDVLEMYMAGASAVAVGTANFA 275 (311)
T ss_dssp CEEECCBCTTTCSBSSTTSCEEEESGGGHHHHHHHHHHHHTTC--SSCEEECSSCCSHHHHHHHHHHTCSEEEECTHHHH
T ss_pred eccccccccccccccccccCCCCCCCcccchhHHHHHHHhhhc--ceeEEEeCCcCCHHHHHHHHHcCCCEEEecHHHHc
Confidence 64321 0 0 122 2466777777766 79999999999999999999999999999999864
Q ss_pred HhhhcCHHHHHHHHHHHHHHHHHHHHHcCCCChhhhccc
Q 017781 311 SLAAEGEKGVRRVLEMLREEFELAMALSGCRSLKEITRD 349 (366)
Q Consensus 311 ~l~~~G~~gv~~~~~~l~~el~~~m~~~G~~~l~el~~~ 349 (366)
++ .++..+.+||..+|...|+++++|+.+.
T Consensus 276 -----~P----~i~~~I~~~L~~~m~~~g~~si~e~~g~ 305 (311)
T d1ep3a_ 276 -----DP----FVCPKIIDKLPELMDQYRIESLESLIQE 305 (311)
T ss_dssp -----CT----THHHHHHHHHHHHHHHTTCSCHHHHHHH
T ss_pred -----CC----hHHHHHHHHHHHHHHHcCCCCHHHHHHH
Confidence 22 2567889999999999999999999764
|
| >d1tv5a1 c.1.4.1 (A:158-566) Dihydroorotate dehydrogenase {Plasmodium falciparum [TaxId: 5833]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: FMN-linked oxidoreductases family: FMN-linked oxidoreductases domain: Dihydroorotate dehydrogenase species: Plasmodium falciparum [TaxId: 5833]
Probab=99.82 E-value=3.3e-19 Score=174.82 Aligned_cols=117 Identities=23% Similarity=0.292 Sum_probs=96.2
Q ss_pred CCCEEEEecc--CHHH--------HHcCCcEEEEcCCC-ccC-------CCCC---c----chHHHHHHHHHHcCCCceE
Q 017781 225 KLPILVKGVL--TAED--------VQAGAAGIIVSNHG-ARQ-------LDYV---P----ATIMALEEVVKATQGRIPV 279 (366)
Q Consensus 225 ~~pv~vK~v~--~~~d--------~~aGad~I~vs~~g-g~~-------~~~~---~----~~~~~l~~i~~~~~~~i~v 279 (366)
..||++|... +.++ .+.|+|+|++.|.. ++. ..+| + .+...+.++++.+++++||
T Consensus 266 ~ppi~vKlsPd~~~~~i~~i~~~~~~~g~dgii~~Nt~~~~~~~~~~~~~~GGlSG~~l~~~al~~v~~v~~~~~~~ipI 345 (409)
T d1tv5a1 266 KPLVFVKLAPDLNQEQKKEIADVLLETNIDGMIISNTTTQINDIKSFENKKGGVSGAKLKDISTKFICEMYNYTNKQIPI 345 (409)
T ss_dssp CCEEEEEECSCCCHHHHHHHHHHHHHTTCSEEEECCCBSCCCCCGGGTTCCSEEEEHHHHHHHHHHHHHHHHHTTTCSCE
T ss_pred CCceEEEeCCCCCchhhHHHHHHHHhccccceecccccccccccccccccCCcccchhHHHHHHHHHHHHHHHcCCCceE
Confidence 4589999986 3332 89999999999854 221 1222 2 2456788888888778999
Q ss_pred EEecCCCCHHHHHHHHHhCcCEEEecHHHHHHhhhcCHHHHHHHHHHHHHHHHHHHHHcCCCChhhhccc
Q 017781 280 FLDGGVRRGTDVFKALALGASGIFIGRPVVYSLAAEGEKGVRRVLEMLREEFELAMALSGCRSLKEITRD 349 (366)
Q Consensus 280 i~~GGI~~~~dv~kalalGAd~V~igr~~l~~l~~~G~~gv~~~~~~l~~el~~~m~~~G~~~l~el~~~ 349 (366)
|++|||.+++|+++.|.+||++|+|++.+++. |+. ++..|.+||..+|+..|+++++|+++.
T Consensus 346 IGvGGI~s~~Da~e~i~AGAs~VQv~T~li~~----Gp~----~v~~I~~~L~~~l~~~g~~~i~e~iG~ 407 (409)
T d1tv5a1 346 IASGGIFSGLDALEKIEAGASVCQLYSCLVFN----GMK----SAVQIKRELNHLLYQRGYYNLKEAIGR 407 (409)
T ss_dssp EEESSCCSHHHHHHHHHTTEEEEEESHHHHHH----GGG----HHHHHHHHHHHHHHHHTCSSSGGGTTT
T ss_pred EEECCCCCHHHHHHHHHcCCCHHhhhhHHHhc----ChH----HHHHHHHHHHHHHHHcCCCCHHHhcCC
Confidence 99999999999999999999999999999874 653 677899999999999999999999875
|
| >d1d3ga_ c.1.4.1 (A:) Dihydroorotate dehydrogenase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: FMN-linked oxidoreductases family: FMN-linked oxidoreductases domain: Dihydroorotate dehydrogenase species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.82 E-value=1.8e-19 Score=174.34 Aligned_cols=269 Identities=18% Similarity=0.165 Sum_probs=163.1
Q ss_pred hhhHHHhHhcccceeeeccccCCCCCCccceeEcCcccCCceEecccccccccCChhhHHHHHHHHHcCCceec-CCCCC
Q 017781 33 QWTLQENRNAFSRILFRPRILIDVSKIDMNTTVLGFKISMPIMIAPTAMQKMAHPEGEYATARAASAAGTIMTL-SSWST 111 (366)
Q Consensus 33 ~~t~~~N~~~f~~i~l~pr~l~~~~~vd~st~l~g~~l~~Pi~iApm~~~~l~~~~~e~~la~aa~~~G~~~~v-s~~~~ 111 (366)
|.+++-....+ ++.+.|.. +.....+++|+|+|.+|++||++|+ |. +++....+.+.++|+++++ .|.+.
T Consensus 24 e~ah~~~~~~~-~~~~~~~~-~~~~~~~L~v~~~Gl~~~nPi~lAs-G~------~~~~~~i~~~~~~G~G~vv~kTit~ 94 (367)
T d1d3ga_ 24 ESAHRLAVRFT-SLGLLPRA-RFQDSDMLEVRVLGHKFRNPVGIAA-GF------DKHGEAVDGLYKMGFGFVEIGSVTP 94 (367)
T ss_dssp HHHHHHHHHHH-HTTCCC----CCCCGGGCEEETTEEESSSEEECT-TS------STTSSSHHHHHHHTCSEEEEEEECS
T ss_pred HHHHHHHHHHH-HhcCcccc-ccCCCCCCceEECCEecCCCcEeCc-CC------CCCHHHHHHHhhcCCcEEeeccccc
Confidence 34443333333 35556653 3445678999999999999999987 32 2344567788888988875 22221
Q ss_pred CC----------------------------HHHHhc-------------cCCCceEEEeeecCC---HHHHHHHHHHHHH
Q 017781 112 SS----------------------------VEEVAS-------------TGPGIRFFQLYVYKD---RNVVAQLVRRAER 147 (366)
Q Consensus 112 ~~----------------------------~e~i~~-------------~~~~~~~~Qly~~~d---~~~~~~~l~ra~~ 147 (366)
.+ .+.+.+ ...-|....+....+ .........+..+
T Consensus 95 ~~~~gn~~pr~~~~~~~~~~~n~~g~~~~g~~~~~~~~~~~~~~~~~~~~~~~pv~vsi~~~~~~~~~~~~~~~~~~~~~ 174 (367)
T d1d3ga_ 95 KPQEGNPRPRVFRLPEDQAVINRYGFNSHGLSVVEHRLRARQQKQAKLTEDGLPLGVNLGKNKTSVDAAEDYAEGVRVLG 174 (367)
T ss_dssp SCBCCSCSCCEEEEGGGTEEEECCCCCBCCHHHHHHHHHTTHHHHHHHHHTTCCEEEEECCCTTCSCHHHHHHHHHHHHG
T ss_pred cccccCCchhhhhhccccccccccCcCCcchHHHHHHHHHHhhhcccccccCceEEEEeccccccHHHHHHHHHHHHHhh
Confidence 10 111100 000133333332111 1112222334445
Q ss_pred cCCCEEEEecCCCCCcchhHHHhhhcCCCCccccccccccccCCCccccchhhHHHhhhccCCCCCHHHHHHHHHhcCCC
Q 017781 148 AGFKAIALTVDTPRLGRREADIKNRFTLPPFLTLKNFQGLDLGKMDEANDSGLAAYVAGQIDRSLSWKDVKWLQTITKLP 227 (366)
Q Consensus 148 ~G~~ai~vtvd~p~~g~r~~d~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~i~~lr~~~~~p 227 (366)
.+++++.+++.||....- . .. .. ...... ......+...+++...++|
T Consensus 175 ~~ad~lelNiScPn~~~~----------~---~~--------------~~---~~~~~~--~~~~~~~~~~~~~~~~~~P 222 (367)
T d1d3ga_ 175 PLADYLVVNVSSPNTAGL----------R---SL--------------QG---KAELRR--LLTKVLQERDGLRRVHRPA 222 (367)
T ss_dssp GGCSEEEEESCCTTSTTC-------------------------------C---HHHHHH--HHHHHHHHHHTSCGGGCCE
T ss_pred hccccccccccccccccc----------c---cc--------------cc---cchhhh--HHHHHHHhhhhcccccCCc
Confidence 677777777777753100 0 00 00 000000 0000111223333445789
Q ss_pred EEEEeccC--HHH--------HHcCCcEEEEcCCC-ccCC---------CC---C----cchHHHHHHHHHHcCCCceEE
Q 017781 228 ILVKGVLT--AED--------VQAGAAGIIVSNHG-ARQL---------DY---V----PATIMALEEVVKATQGRIPVF 280 (366)
Q Consensus 228 v~vK~v~~--~~d--------~~aGad~I~vs~~g-g~~~---------~~---~----~~~~~~l~~i~~~~~~~i~vi 280 (366)
+++|...+ ..+ .++|+|+|++.|.. +... .+ | +.....+..+++..+.++|||
T Consensus 223 v~vKlsP~~~~~~i~~~a~~~~~~g~~gi~~~nt~~~~~~~~~~~~~~~~gg~sG~~~~~i~l~~v~~v~~~~~~~ipIi 302 (367)
T d1d3ga_ 223 VLVKIAPDLTSQDKEDIASVVKELGIDGLIVTNTTVSRPAGLQGALRSETGGLSGKPLRDLSTQTIREMYALTQGRVPII 302 (367)
T ss_dssp EEEEECSCCCHHHHHHHHHHHHHHTCCEEEECCCBSCCCTTCCCTTTTSSSEEEEGGGHHHHHHHHHHHHHHTTTCSCEE
T ss_pred cccccCcccchhhhhhhHHHHHhhhhheeecccccccccccccccccccccccccccchhhhHHHHHHHHHHhCCCccEE
Confidence 99998853 322 88999999998853 2110 11 2 224567777777776789999
Q ss_pred EecCCCCHHHHHHHHHhCcCEEEecHHHHHHhhhcCHHHHHHHHHHHHHHHHHHHHHcCCCChhhhcccc
Q 017781 281 LDGGVRRGTDVFKALALGASGIFIGRPVVYSLAAEGEKGVRRVLEMLREEFELAMALSGCRSLKEITRDH 350 (366)
Q Consensus 281 ~~GGI~~~~dv~kalalGAd~V~igr~~l~~l~~~G~~gv~~~~~~l~~el~~~m~~~G~~~l~el~~~~ 350 (366)
+.|||.+++|+++.|.+|||+|+|++.+++. |+. ++..+++||+.+|...|+++++|+++..
T Consensus 303 g~GGI~s~~Da~e~i~aGAs~VQi~Ta~~~~----Gp~----ii~~I~~~L~~~l~~~G~~si~dl~G~a 364 (367)
T d1d3ga_ 303 GVGGVSSGQDALEKIRAGASLVQLYTALTFW----GPP----VVGKVKRELEALLKEQGFGGVTDAIGAD 364 (367)
T ss_dssp EESSCCSHHHHHHHHHHTCSEEEESHHHHHH----CTH----HHHHHHHHHHHHHHHTTCSSHHHHTTGG
T ss_pred EECCCCCHHHHHHHHHcCCCHHHhhHHHHhc----CcH----HHHHHHHHHHHHHHHcCCCCHHHhcChh
Confidence 9999999999999999999999999998874 664 7788999999999999999999998753
|
| >d1vhna_ c.1.4.1 (A:) Putative flavin oxidoreducatase TM0096 {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: FMN-linked oxidoreductases family: FMN-linked oxidoreductases domain: Putative flavin oxidoreducatase TM0096 species: Thermotoga maritima [TaxId: 2336]
Probab=99.82 E-value=7.8e-20 Score=172.68 Aligned_cols=232 Identities=22% Similarity=0.248 Sum_probs=170.0
Q ss_pred ceEecccccccccCChhhHHHHHHHHHcCCceecCCCCCC------C--HHHHhcc-CCCceEEEeeecCCHHHHHHHHH
Q 017781 73 PIMIAPTAMQKMAHPEGEYATARAASAAGTIMTLSSWSTS------S--VEEVAST-GPGIRFFQLYVYKDRNVVAQLVR 143 (366)
Q Consensus 73 Pi~iApm~~~~l~~~~~e~~la~aa~~~G~~~~vs~~~~~------~--~e~i~~~-~~~~~~~Qly~~~d~~~~~~~l~ 143 (366)
.|.+|||.+.+ +.++++.|.++|...+.++|.+. . ..++... .+.|..+||+ ++|++.+.+..+
T Consensus 2 ki~LAPM~g~t------d~~fR~l~~~~g~~~~~Temi~~~~~~~~~~~~~~~~~~~~e~p~~~Ql~-g~~p~~~~~aa~ 74 (305)
T d1vhna_ 2 KVGLAPMAGYT------DSAFRTLAFEWGADFAFSEMVSAKGFLMNSQKTEELLPQPHERNVAVQIF-GSEPNELSEAAR 74 (305)
T ss_dssp EEEECCCTTTC------SHHHHHHHHTTTCCCEECSCEEHHHHHTTCHHHHHHSCCTTCTTEEEEEE-CSCHHHHHHHHH
T ss_pred eEEEECcCCCc------cHHHHHHHHHHCcCEEEECCEEechhhhCChhhHhhccCCCCCCeEEEEe-ccchhhhhhhhh
Confidence 47899998765 88999999999999888888532 1 1122211 1268999998 678888887775
Q ss_pred HHHHcCCCEEEEecCCCCCcchhHHHhhhcCCCCccccccccccccCCCccccchhhHHHhhhccCCCCCHHHHHHHHHh
Q 017781 144 RAERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLTLKNFQGLDLGKMDEANDSGLAAYVAGQIDRSLSWKDVKWLQTI 223 (366)
Q Consensus 144 ra~~~G~~ai~vtvd~p~~g~r~~d~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~i~~lr~~ 223 (366)
.+ +.|++.|.+|++||.. .+.. .+.+..++ .+|++..+.++.+++.
T Consensus 75 ~~-~~~~~~IdlN~GCP~~-----~v~~--------------------------~g~Ga~Ll--~~p~~~~~iv~~~~~~ 120 (305)
T d1vhna_ 75 IL-SEKYKWIDLNAGCPVR-----KVVK--------------------------EGAGGALL--KDLRHFRYIVRELRKS 120 (305)
T ss_dssp HH-TTTCSEEEEEECCCCH-----HHHH--------------------------TTCGGGGG--SCHHHHHHHHHHHHHH
T ss_pred hh-hhheeeeeEEEEecch-----hhcc--------------------------cccceeec--cCHHHHHHHhhhhhhh
Confidence 54 4599999999999963 0000 01122334 3677777889999999
Q ss_pred cCCCEEEEeccCHHH----------HHcCCcEEEEcCCCccCCCCCcchHHHHHHHHHHcCCCceEEEecCCCCHHHHHH
Q 017781 224 TKLPILVKGVLTAED----------VQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFK 293 (366)
Q Consensus 224 ~~~pv~vK~v~~~~d----------~~aGad~I~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~i~vi~~GGI~~~~dv~k 293 (366)
+++||.+|.....++ .++|++.|+|+++...|...+++.|+.+++++ .++|||++|||.+.+|+.+
T Consensus 121 ~~~pvsvK~RlG~d~~~~~~~~~~l~~~G~~~itvH~Rt~~q~~~~~a~~~~i~~~~----~~ipvi~NGdI~s~~d~~~ 196 (305)
T d1vhna_ 121 VSGKFSVKTRLGWEKNEVEEIYRILVEEGVDEVFIHTRTVVQSFTGRAEWKALSVLE----KRIPTFVSGDIFTPEDAKR 196 (305)
T ss_dssp CSSEEEEEEESCSSSCCHHHHHHHHHHTTCCEEEEESSCTTTTTSSCCCGGGGGGSC----CSSCEEEESSCCSHHHHHH
T ss_pred cccccccccccCcccchhhHHHHHHHHhCCcEEEechhhhhhccccchhhhHHHhhh----hhhhhhcccccccHHHHHH
Confidence 999999998865432 89999999999887777788888888876543 4799999999999999999
Q ss_pred HHH-hCcCEEEecH-----HHHHHhhh----cCH---HHHHHHHHHHHHHHHHHHHHcCCC-Chhhhccc
Q 017781 294 ALA-LGASGIFIGR-----PVVYSLAA----EGE---KGVRRVLEMLREEFELAMALSGCR-SLKEITRD 349 (366)
Q Consensus 294 ala-lGAd~V~igr-----~~l~~l~~----~G~---~gv~~~~~~l~~el~~~m~~~G~~-~l~el~~~ 349 (366)
++. .|+|+||||| ||++.-.. ++. ....+.++.+.+.++....+.|.. .+..+++.
T Consensus 197 ~l~~tg~dgVMiGRgal~nP~if~~i~~~l~~~~~~~~~~~e~~~~~~~~~~~~~~~~g~~~~l~~~rkh 266 (305)
T d1vhna_ 197 ALEESGCDGLLVARGAIGRPWIFKQIKDFLRSGKYSEPSREEILRTFERHLELLIKTKGERKAVVEMRKF 266 (305)
T ss_dssp HHHHHCCSEEEESGGGTTCTTHHHHHHHHHHHSCCCCCCHHHHHHHHHHHHHHHHHHHCHHHHHHHHHTT
T ss_pred HHHhcCCCeEehhHHHHHhhhHhhhhhhhhcCCCcccchhHHHHHhHHHHHHHHHHhcCcchHHHHHHHH
Confidence 998 6999999999 66665321 111 123456677777777777777643 45555554
|
| >d1ea0a2 c.1.4.1 (A:423-1193) Alpha subunit of glutamate synthase, central and FMN domains {Azospirillum brasilense [TaxId: 192]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: FMN-linked oxidoreductases family: FMN-linked oxidoreductases domain: Alpha subunit of glutamate synthase, central and FMN domains species: Azospirillum brasilense [TaxId: 192]
Probab=99.80 E-value=2.7e-18 Score=176.48 Aligned_cols=254 Identities=20% Similarity=0.196 Sum_probs=177.0
Q ss_pred ccCCceEecccccccccCChhhHHHHHHHHHcCCceecCCCCCCCHHHHhccC----CCceEEEeeecCCHHHHHHHHHH
Q 017781 69 KISMPIMIAPTAMQKMAHPEGEYATARAASAAGTIMTLSSWSTSSVEEVASTG----PGIRFFQLYVYKDRNVVAQLVRR 144 (366)
Q Consensus 69 ~l~~Pi~iApm~~~~l~~~~~e~~la~aa~~~G~~~~vs~~~~~~~e~i~~~~----~~~~~~Qly~~~d~~~~~~~l~r 144 (366)
.+-.||.++.|++++++ ++.-.+++++|+..|+....++..- +.+...... .+...+|+.. ....++.+.+
T Consensus 426 ~I~k~f~isaMSfGALS-~~A~~aLa~ga~~~g~~~ntGEGG~-~~~~~~~~~~~~~~~~~i~q~as-grfG~~~~~l-- 500 (771)
T d1ea0a2 426 AIRKRFITPGMSMGALS-PEAHGTLNVAMNRIGAKSDSGEGGE-DPARFRPDKNGDNWNSAIKQVAS-GRFGVTAEYL-- 500 (771)
T ss_dssp HHHTTEEEEECCBTTBC-HHHHHHHHHHHHHTTCEEECCTTCC-CGGGSSBCTTSCBCCCSEEEECS-SCTTCCHHHH--
T ss_pred hhheeeccccccccccC-HHHHHHHHHHHHhcCCeeecCCCCC-ChhhccccCCCcccccccceecC-CcCCcCHHHh--
Confidence 35589999999998875 5678899999999999988888753 333332111 1346788753 2333333333
Q ss_pred HHHcCCCEEEEecCC---CCCcchh------HHHhhhcCCCCccccccccccccCCCccccchhhHHHhhhccCCCC-CH
Q 017781 145 AERAGFKAIALTVDT---PRLGRRE------ADIKNRFTLPPFLTLKNFQGLDLGKMDEANDSGLAAYVAGQIDRSL-SW 214 (366)
Q Consensus 145 a~~~G~~ai~vtvd~---p~~g~r~------~d~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~-~~ 214 (366)
..+++|-|-+.. |..|... .++..-..+|++. ..+++..++++ +.
T Consensus 501 ---~~~~~ieIK~~QGAKpG~GG~Lpg~KVt~~IA~~R~~~~G~----------------------~~iSP~~h~di~si 555 (771)
T d1ea0a2 501 ---NQCRELEIKVAQGAKPGEGGQLPGFKVTEMIARLRHSTPGV----------------------MLISPPPHHDIYSI 555 (771)
T ss_dssp ---TSCSEEEEECCCTTSTTTCCEECGGGCCHHHHHHHTCCTTC----------------------CEECCSSCTTCSSH
T ss_pred ---cccceeEEeeecccccccccccccccCCHHHHHhcCCCCCC----------------------CccCCCCCCCCCCH
Confidence 357788777663 2211110 0000000111111 11222222332 33
Q ss_pred ----HHHHHHHHhc-CCCEEEEecc--CHHH-----HHcCCcEEEEcCCC-ccC-------CCCCcchHHHHHHHHHHc-
Q 017781 215 ----KDVKWLQTIT-KLPILVKGVL--TAED-----VQAGAAGIIVSNHG-ARQ-------LDYVPATIMALEEVVKAT- 273 (366)
Q Consensus 215 ----~~i~~lr~~~-~~pv~vK~v~--~~~d-----~~aGad~I~vs~~g-g~~-------~~~~~~~~~~l~~i~~~~- 273 (366)
+.|.+||+.. +.||.||.+. ..++ .++|+|+|+|+++. |+. .+.|.|....|.++.+++
T Consensus 556 edL~~~I~~Lr~~~~~~pv~vKl~~~~~~~~i~~~v~ka~~D~I~IdG~eGGTGAap~~~~d~~GlP~~~~l~~~~~~L~ 635 (771)
T d1ea0a2 556 EDLAQLIYDLKQINPDAKVTVKLVSRSGIGTIAAGVAKANADIILISGNSGGTGASPQTSIKFAGLPWEMGLSEVHQVLT 635 (771)
T ss_dssp HHHHHHHHHHHHHCTTCEEEEEEECCTTHHHHHHHHHHTTCSEEEEECTTCCCSSEETTHHHHSCCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCCCCCEEEEECCcCcHHHHHHHHHhcCCCEEEEecCCCccccccHHHhhcCCcCHHHHHHHHHHHHH
Confidence 3478888877 7899999874 2344 79999999999985 432 135778888898888875
Q ss_pred ----CCCceEEEecCCCCHHHHHHHHHhCcCEEEecHHHHHHhhhc---------------------------CHHHHHH
Q 017781 274 ----QGRIPVFLDGGVRRGTDVFKALALGASGIFIGRPVVYSLAAE---------------------------GEKGVRR 322 (366)
Q Consensus 274 ----~~~i~vi~~GGI~~~~dv~kalalGAd~V~igr~~l~~l~~~---------------------------G~~gv~~ 322 (366)
++++.|+++||++++.|++||++||||+|.+||.+|+++.|. .++.|.+
T Consensus 636 ~~glr~~V~l~a~Ggl~t~~Dv~ka~aLGAD~v~~gt~~m~alGCi~~r~Ch~~~CP~GIaTqd~~lr~~~~~~~~~v~n 715 (771)
T d1ea0a2 636 LNRLRHRVRLRTDGGLKTGRDIVIAAMLGAEEFGIGTASLIAMGCIMVRQCHSNTCPVGVCVQDDKLRQKFVGTPEKVVN 715 (771)
T ss_dssp TTTCTTTSEEEEESSCCSHHHHHHHHHTTCSEEECCHHHHHHHTCCCCCCTTTTCCTTSSSCCCTTGGGSCCCCHHHHHH
T ss_pred HcCCCCceEEEEeCCCCCHHHHHHHHHhCCCchHHhHHHHHHhhCHHhhhccCCCCCCeeecCCHHHHhhccCcHHHHHH
Confidence 468999999999999999999999999999999999998763 2577999
Q ss_pred HHHHHHHHHHHHHHHcCCCChhhhc-cccee
Q 017781 323 VLEMLREEFELAMALSGCRSLKEIT-RDHIV 352 (366)
Q Consensus 323 ~~~~l~~el~~~m~~~G~~~l~el~-~~~l~ 352 (366)
++..+.+|++..|..+|.++++|+. +.++.
T Consensus 716 ~~~~~~~e~~~~~~~~G~~s~~~lvG~~dll 746 (771)
T d1ea0a2 716 LFTFLAEEVREILAGLGFRSLNEVIGRTDLL 746 (771)
T ss_dssp HHHHHHHHHHHHHHHHTCSCSGGGTTCGGGE
T ss_pred HHHHHHHHHHHHHHHHcCCCHHHhccchhhh
Confidence 9999999999999999999999983 45543
|
| >d2b4ga1 c.1.4.1 (A:2-313) Dihydroorotate dehydrogenase {Trypanosoma brucei [TaxId: 5691]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: FMN-linked oxidoreductases family: FMN-linked oxidoreductases domain: Dihydroorotate dehydrogenase species: Trypanosoma brucei [TaxId: 5691]
Probab=99.80 E-value=4.8e-19 Score=167.58 Aligned_cols=130 Identities=18% Similarity=0.135 Sum_probs=96.9
Q ss_pred CCHHHHHHHHHhcCCCEEEEeccCH--H---H------HHcCCcEEEEcCCCcc---------C--C-----CC---Ccc
Q 017781 212 LSWKDVKWLQTITKLPILVKGVLTA--E---D------VQAGAAGIIVSNHGAR---------Q--L-----DY---VPA 261 (366)
Q Consensus 212 ~~~~~i~~lr~~~~~pv~vK~v~~~--~---d------~~aGad~I~vs~~gg~---------~--~-----~~---~~~ 261 (366)
...+.++++|+.+++|+++|..... . . ...+++++...|.-+. + . .+ |++
T Consensus 145 ~~~~i~~~v~~~~~~pi~vKl~p~~~~~~~~~~~~~~~~~~~~~~i~~~nt~~~~~~~~~~~~~~~~~~~~~~GGlSG~~ 224 (312)
T d2b4ga1 145 TTRTYLQKVSEAYGLPFGVKMPPYFDIAHFDMAAAVLNDFPLVKFITCVNSIGNGLVIDPANETVVIKPKQGFGGLGGKY 224 (312)
T ss_dssp HHHHHHHHHHHHHCSCEEEEECCCCCHHHHHHHHHHHTTCTTEEEEEECCCEEEEECEETTTTEESCCGGGGEEEEEEGG
T ss_pred HHHHHHHHhhccccccceeccccccchhHHHHHHHHHHhhhhhhhhhhcccccccccccccCCCccccccccccCccccc
Confidence 3446689999999999999987532 2 1 2234555554443221 0 0 01 222
Q ss_pred ----hHHHHHHHHHHcCCCceEEEecCCCCHHHHHHHHHhCcCEEEecHHHHHHhhhcCHHHHHHHHHHHHHHHHHHHHH
Q 017781 262 ----TIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFIGRPVVYSLAAEGEKGVRRVLEMLREEFELAMAL 337 (366)
Q Consensus 262 ----~~~~l~~i~~~~~~~i~vi~~GGI~~~~dv~kalalGAd~V~igr~~l~~l~~~G~~gv~~~~~~l~~el~~~m~~ 337 (366)
++..+.++++.++ ..+||+.|||++++|+++.|.+||++|++++.+++. |+ .+++.+.+||+.+|+.
T Consensus 225 l~~~al~~v~~~~~~~~-~~~Iig~GGI~s~~Da~e~i~aGAs~Vqv~Tal~~~----Gp----~~i~~i~~~L~~~l~~ 295 (312)
T d2b4ga1 225 VLPTALANVNAFFRRCP-DKLVFGCGGVYSGEEAFLHILAGASMVQVGTALHDE----GP----IIFARLNKELQEIMTN 295 (312)
T ss_dssp GHHHHHHHHHHHHHHCT-TSEEEEESSCCSHHHHHHHHHHTEEEEEESHHHHHH----CT----THHHHHHHHHHHHHHH
T ss_pred ccchhhHHHHHHHHHcC-CCceeecCCcCCHHHHHHHHHcCCChheeehhhHhc----Cc----HHHHHHHHHHHHHHHH
Confidence 4566777777764 567999999999999999999999999999999874 66 3778999999999999
Q ss_pred cCCCChhhhcccc
Q 017781 338 SGCRSLKEITRDH 350 (366)
Q Consensus 338 ~G~~~l~el~~~~ 350 (366)
.|++|++|+++..
T Consensus 296 ~G~~si~e~~G~~ 308 (312)
T d2b4ga1 296 KGYKTLDEFRGRV 308 (312)
T ss_dssp HTCCSGGGTTTCC
T ss_pred cCCCCHHHHcCee
Confidence 9999999999853
|
| >d1ofda2 c.1.4.1 (A:431-1239) Alpha subunit of glutamate synthase, central and FMN domains {Synechocystis sp. [TaxId: 1143]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: FMN-linked oxidoreductases family: FMN-linked oxidoreductases domain: Alpha subunit of glutamate synthase, central and FMN domains species: Synechocystis sp. [TaxId: 1143]
Probab=99.74 E-value=8.9e-17 Score=165.55 Aligned_cols=258 Identities=18% Similarity=0.162 Sum_probs=171.5
Q ss_pred ccCCceEecccccccccCChhhHHHHHHHHHcCCceecCCCCCCCHHHHhcc-------------------C---CCceE
Q 017781 69 KISMPIMIAPTAMQKMAHPEGEYATARAASAAGTIMTLSSWSTSSVEEVAST-------------------G---PGIRF 126 (366)
Q Consensus 69 ~l~~Pi~iApm~~~~l~~~~~e~~la~aa~~~G~~~~vs~~~~~~~e~i~~~-------------------~---~~~~~ 126 (366)
.+-.||.++.|++++++ ++.-.+++++|.+.|+....++..- +.+..... . .....
T Consensus 435 ~I~k~f~~~aMS~GslS-~~a~~ala~aa~~~G~~~ntGEGG~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~s~i 512 (809)
T d1ofda2 435 SIVKRFCTGGMSLGALS-REAHETLAIAMNRLGAKSNSGEGGE-DVVRYLTLDDVDSEGNSPTLPHLHGLQNGDTANSAI 512 (809)
T ss_dssp HHHTTEECCCBCTTTSC-HHHHHHHHHHHHHHTCBCEECTTCC-CGGGGSCCCCCCTTSCCTTSTTCCSCCTTCCCCCSE
T ss_pred hhhhhhccccccccccc-HHHHHHHHHHHHHhCceecCCCCCC-CceeeeccCccccccCcccccccccccCCCCCcchh
Confidence 35689999999998865 5677899999999999988888753 22221100 0 02234
Q ss_pred EEeeecCCHHHHHHHHHHHHHcCCCEEEEecCC---CCCcchhHHHhhhcCCCC-ccccccccccccCCCccccc-hhhH
Q 017781 127 FQLYVYKDRNVVAQLVRRAERAGFKAIALTVDT---PRLGRREADIKNRFTLPP-FLTLKNFQGLDLGKMDEAND-SGLA 201 (366)
Q Consensus 127 ~Qly~~~d~~~~~~~l~ra~~~G~~ai~vtvd~---p~~g~r~~d~~~~~~~p~-~~~~~~~~~~~~~~~~~~~~-~~~~ 201 (366)
.|+- .....++.+.+.. ++.|-|-+.. |..|. .+|. +++. . ++..+. ....
T Consensus 513 ~q~a-sgrfGv~~~~l~~-----~~~ieIK~~QGAKPG~GG---------~Lpg~KVt~-~--------IA~~R~~~~G~ 568 (809)
T d1ofda2 513 KQIA-SGRFGVTPEYLMS-----GKQLEIKMAQGAKPGEGG---------QLPGKKVSE-Y--------IAMLRRSKPGV 568 (809)
T ss_dssp EEEC-TTCTTCCHHHHHH-----CSEEEEECCCTTSTTSCC---------EECGGGCCH-H--------HHHHHTSCTTC
T ss_pred Hhhh-hcccCCChhhhcc-----cceEEEEEeccccccccc---------ccchhhcCH-H--------HHhhcCCCCCC
Confidence 5653 2333344444443 3556665543 22111 0110 1110 0 000000 0001
Q ss_pred HHhhhccCCCC-CHH----HHHHHHHhc-CCCEEEEecc--CHHH-----HHcCCcEEEEcCCC-ccC-------CCCCc
Q 017781 202 AYVAGQIDRSL-SWK----DVKWLQTIT-KLPILVKGVL--TAED-----VQAGAAGIIVSNHG-ARQ-------LDYVP 260 (366)
Q Consensus 202 ~~~~~~~d~~~-~~~----~i~~lr~~~-~~pv~vK~v~--~~~d-----~~aGad~I~vs~~g-g~~-------~~~~~ 260 (366)
..+++..++++ +.+ .|.++|+.. +.||.||.+. ...+ .++|+|.|+++++. |+. .+.|.
T Consensus 569 ~liSP~~h~diysiedL~q~I~~Lr~~~~~~pv~vKl~~~~g~~~ia~~vaka~aD~I~IdG~eGGTGAap~~~~~~~Gl 648 (809)
T d1ofda2 569 TLISPPPHHDIYSIEDLAQLIYDLHQINPEAQVSVKLVAEIGIGTIAAGVAKANADIIQISGHDGGTGASPLSSIKHAGS 648 (809)
T ss_dssp CEECCSSCTTCSSHHHHHHHHHHHHHHCTTSEEEEEEECSTTHHHHHHHHHHTTCSEEEEECTTCCCSSEEHHHHHHBCC
T ss_pred CCCCCCCCCCCCCHHHHHHHHHHHHHhCCCCceEEEEeeecChHHHHHHHhhcCCCEEEEeCCCCccccccHHHHhcCCc
Confidence 12222223332 333 478888876 6799999883 3333 79999999999984 442 13567
Q ss_pred chHHHHHHHHHHc-----CCCceEEEecCCCCHHHHHHHHHhCcCEEEecHHHHHHhhhc--------------------
Q 017781 261 ATIMALEEVVKAT-----QGRIPVFLDGGVRRGTDVFKALALGASGIFIGRPVVYSLAAE-------------------- 315 (366)
Q Consensus 261 ~~~~~l~~i~~~~-----~~~i~vi~~GGI~~~~dv~kalalGAd~V~igr~~l~~l~~~-------------------- 315 (366)
|....|.++.+++ ++++.++++||++|+.|++||++||||+|.+||.+|+++.|.
T Consensus 649 P~~~gl~~a~~~L~~~glR~~V~Lia~Ggl~t~~Dv~ka~aLGAD~v~~gt~~l~alGCi~~r~Ch~n~CP~GIaTqd~~ 728 (809)
T d1ofda2 649 PWELGVTEVHRVLMENQLRDRVLLRADGGLKTGWDVVMAALMGAEEYGFGSIAMIAEGCIMARVCHTNNCPVGVATQQER 728 (809)
T ss_dssp CHHHHHHHHHHHHHHTTCGGGCEEEEESSCCSHHHHHHHHHTTCSEEECSHHHHHHTTCCCCCCGGGTCCTTSSSCCCHH
T ss_pred cHHHHHHHHHHHHHHcCCCCceEEEEeCCCCCHHHHHHHHHhCCCchhHhHHHHHHHHCHHhHhhCCCCCCCcccCCCHH
Confidence 7778888887765 468999999999999999999999999999999999998663
Q ss_pred -------CHHHHHHHHHHHHHHHHHHHHHcCCCChhhhc-cccee
Q 017781 316 -------GEKGVRRVLEMLREEFELAMALSGCRSLKEIT-RDHIV 352 (366)
Q Consensus 316 -------G~~gv~~~~~~l~~el~~~m~~~G~~~l~el~-~~~l~ 352 (366)
.++.|.+++..+.+|++..|..+|.++++|+. +.++.
T Consensus 729 l~~~~~~~~~~v~n~~~~~~~e~~~~~a~~G~~s~~elvGr~dll 773 (809)
T d1ofda2 729 LRQRFKGVPGQVVNFFYFIAEEVRSLLAHLGYRSLDDIIGRTDLL 773 (809)
T ss_dssp HHTTCCCCHHHHHHHHHHHHHHHHHHHHHHTCSCGGGTTTCGGGE
T ss_pred HHhhCcCcHHHHHHHHHHHHHHHHHHHHHHcCCCHHHhcChHhhh
Confidence 24679999999999999999999999999984 43443
|
| >d1f76a_ c.1.4.1 (A:) Dihydroorotate dehydrogenase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: FMN-linked oxidoreductases family: FMN-linked oxidoreductases domain: Dihydroorotate dehydrogenase species: Escherichia coli [TaxId: 562]
Probab=99.61 E-value=9.4e-15 Score=139.12 Aligned_cols=100 Identities=20% Similarity=0.238 Sum_probs=74.8
Q ss_pred HHHHHhcCCCEEEEeccCHH--H--------HHcCCcEEEEcCCC-ccC---------CCC---Ccc----hHHHHHHHH
Q 017781 218 KWLQTITKLPILVKGVLTAE--D--------VQAGAAGIIVSNHG-ARQ---------LDY---VPA----TIMALEEVV 270 (366)
Q Consensus 218 ~~lr~~~~~pv~vK~v~~~~--d--------~~aGad~I~vs~~g-g~~---------~~~---~~~----~~~~l~~i~ 270 (366)
.+.+...++||++|...+.+ + .+.|+++++..|.. ++. ..+ |++ ++..+.+++
T Consensus 204 ~~~~~~~~~Pv~vKlsp~~~~~~i~~~a~~~~~~g~~gv~~int~~~~~~~~~~~~~~~~GGlSG~~i~~~al~~v~~v~ 283 (336)
T d1f76a_ 204 LQAMHHKYVPIAVKIAPDLSEEELIQVADSLVRHNIDGVIATNTTLDRSLVQGMKNCDQTGGLSGRPLQLKSTEIIRRLS 283 (336)
T ss_dssp HHHHHTSCCCEEEECCSCCCHHHHHHHHHHHHHTTCSEEEECCCBCCCTTSTTSTTTTCSSEEEEGGGHHHHHHHHHHHH
T ss_pred hhhhccCcCCcccccchhhhhhhhhhhHHHHHhcCccchhhhhhhhcccccccccccccccccccchhHHHHHHHHHHHH
Confidence 34445568999999885332 2 77899999988742 221 012 222 456677888
Q ss_pred HHcCCCceEEEecCCCCHHHHHHHHHhCcCEEEecHHHHHHhhhcCHHHHH
Q 017781 271 KATQGRIPVFLDGGVRRGTDVFKALALGASGIFIGRPVVYSLAAEGEKGVR 321 (366)
Q Consensus 271 ~~~~~~i~vi~~GGI~~~~dv~kalalGAd~V~igr~~l~~l~~~G~~gv~ 321 (366)
+.++.++|||++|||.+++|+.+.|.+||++|+||+.+++. |+.-+.
T Consensus 284 ~~~~~~ipIIG~GGI~s~~Da~e~i~aGAsaVQv~Tal~~~----Gp~ii~ 330 (336)
T d1f76a_ 284 LELNGRLPIIGVGGIDSVIAAREKIAAGASLVQIYSGFIFK----GPPLIK 330 (336)
T ss_dssp HHHTTSSCEEEESSCCSHHHHHHHHHHTCSEEEESHHHHHH----CHHHHH
T ss_pred HHcCCCCeEEEECCCCCHHHHHHHHHcCCcHHHHHHHHHhc----ChHHHH
Confidence 87777899999999999999999999999999999998874 775333
|
| >d1yxya1 c.1.2.5 (A:4-233) Putative N-acetylmannosamine-6-phosphate 2-epimerase NanE {Streptococcus pyogenes [TaxId: 1314]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Ribulose-phoshate binding barrel family: NanE-like domain: Putative N-acetylmannosamine-6-phosphate 2-epimerase NanE species: Streptococcus pyogenes [TaxId: 1314]
Probab=99.43 E-value=1.4e-12 Score=116.42 Aligned_cols=95 Identities=20% Similarity=0.212 Sum_probs=77.9
Q ss_pred CHHHHHHHHHhcCCCEEEEeccCHHH----HHcCCcEEEEcCCCccCCCCCcch-HHHHHHHHHHcCCCceEEEecCCCC
Q 017781 213 SWKDVKWLQTITKLPILVKGVLTAED----VQAGAAGIIVSNHGARQLDYVPAT-IMALEEVVKATQGRIPVFLDGGVRR 287 (366)
Q Consensus 213 ~~~~i~~lr~~~~~pv~vK~v~~~~d----~~aGad~I~vs~~gg~~~~~~~~~-~~~l~~i~~~~~~~i~vi~~GGI~~ 287 (366)
.|+.+++++..+..+++.+.+.+.++ .++|+|+|.++++++.+.+..... ...+.++.... ++|||++|||+|
T Consensus 117 ~~~~~~~~~~~~~~~~v~~~v~t~~~a~~a~~~Gad~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~ipvia~GGI~t 194 (230)
T d1yxya1 117 IASFIRQVKEKYPNQLLMADISTFDEGLVAHQAGIDFVGTTLSGYTPYSRQEAGPDVALIEALCKA--GIAVIAEGKIHS 194 (230)
T ss_dssp HHHHHHHHHHHCTTCEEEEECSSHHHHHHHHHTTCSEEECTTTTSSTTSCCSSSCCHHHHHHHHHT--TCCEEEESCCCS
T ss_pred HHHHHHHHHhcCCCceEecCCCCHHHHHHHHhcCCCEEEeecccccccccccchHHHHHHHHHhcC--CCeEEEeCCCCC
Confidence 57889999999888899999999887 899999999998876655443322 22344454545 899999999999
Q ss_pred HHHHHHHHHhCcCEEEecHHHH
Q 017781 288 GTDVFKALALGASGIFIGRPVV 309 (366)
Q Consensus 288 ~~dv~kalalGAd~V~igr~~l 309 (366)
++|+.+++++|||+|+||+++.
T Consensus 195 ~~d~~~al~~GAd~V~vGsAi~ 216 (230)
T d1yxya1 195 PEEAKKINDLGVAGIVVGGAIT 216 (230)
T ss_dssp HHHHHHHHTTCCSEEEECHHHH
T ss_pred HHHHHHHHHcCCCEEEEChhhc
Confidence 9999999999999999999875
|
| >d1y0ea_ c.1.2.5 (A:) Putative N-acetylmannosamine-6-phosphate 2-epimerase NanE {Staphylococcus aureus [TaxId: 1280]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Ribulose-phoshate binding barrel family: NanE-like domain: Putative N-acetylmannosamine-6-phosphate 2-epimerase NanE species: Staphylococcus aureus [TaxId: 1280]
Probab=99.40 E-value=3e-12 Score=113.45 Aligned_cols=95 Identities=17% Similarity=0.197 Sum_probs=80.1
Q ss_pred CHHHHHHHHHhcCCCEEEEeccCHHH----HHcCCcEEEEcCCCccCCCC----CcchHHHHHHHHHHcCCCceEEEecC
Q 017781 213 SWKDVKWLQTITKLPILVKGVLTAED----VQAGAAGIIVSNHGARQLDY----VPATIMALEEVVKATQGRIPVFLDGG 284 (366)
Q Consensus 213 ~~~~i~~lr~~~~~pv~vK~v~~~~d----~~aGad~I~vs~~gg~~~~~----~~~~~~~l~~i~~~~~~~i~vi~~GG 284 (366)
.++.++++++....+++...+.+.++ .+.|+|+|.+.+++++.... ....++.+.++++.+ ++|||++||
T Consensus 106 ~~~~~~~~~~~~~~~~v~~~~~t~~~a~~~~~~g~d~i~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~--~iPVia~GG 183 (222)
T d1y0ea_ 106 LDELVSYIRTHAPNVEIMADIATVEEAKNAARLGFDYIGTTLHGYTSYTQGQLLYQNDFQFLKDVLQSV--DAKVIAEGN 183 (222)
T ss_dssp HHHHHHHHHHHCTTSEEEEECSSHHHHHHHHHTTCSEEECTTTTSSTTSTTCCTTHHHHHHHHHHHHHC--CSEEEEESS
T ss_pred HHHHHHHHHHhCCceEEeecCCCHHHHHHHHHcCCCeEEEeccCCcccccCccchhhHHHHHHHHHhcC--CCcEEEeCC
Confidence 45678888888888889999988887 89999999988886543322 234577888888877 899999999
Q ss_pred CCCHHHHHHHHHhCcCEEEecHHHH
Q 017781 285 VRRGTDVFKALALGASGIFIGRPVV 309 (366)
Q Consensus 285 I~~~~dv~kalalGAd~V~igr~~l 309 (366)
|+|++|+.+++++|||+|++||++.
T Consensus 184 I~t~~d~~~~~~~GAdgV~iGsAi~ 208 (222)
T d1y0ea_ 184 VITPDMYKRVMDLGVHCSVVGGAIT 208 (222)
T ss_dssp CCSHHHHHHHHHTTCSEEEECHHHH
T ss_pred CCCHHHHHHHHHcCCCEEEEchhhc
Confidence 9999999999999999999999875
|
| >d1z41a1 c.1.4.1 (A:2-338) NADPH dehydrogenase NamA {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: FMN-linked oxidoreductases family: FMN-linked oxidoreductases domain: NADPH dehydrogenase NamA species: Bacillus subtilis [TaxId: 1423]
Probab=99.27 E-value=9.5e-11 Score=111.07 Aligned_cols=97 Identities=19% Similarity=0.211 Sum_probs=75.8
Q ss_pred CCHHHHHHHHHhcCCCEEEEecc--------CHHH--------HHcCCcEEEEcCCCccCC--CCCcc-hHHHHHHHHHH
Q 017781 212 LSWKDVKWLQTITKLPILVKGVL--------TAED--------VQAGAAGIIVSNHGARQL--DYVPA-TIMALEEVVKA 272 (366)
Q Consensus 212 ~~~~~i~~lr~~~~~pv~vK~v~--------~~~d--------~~aGad~I~vs~~gg~~~--~~~~~-~~~~l~~i~~~ 272 (366)
+..+.++.+|+.++.|++++... +.++ .++|+|.+.++....... ...+. ..+....+++.
T Consensus 195 f~~Eiv~air~~~~~~~~vr~~~~~~~~~g~~~~~~~~~~~~l~~~g~d~~~~s~g~~~~~~~~~~~~~~~~~~~~ik~~ 274 (337)
T d1z41a1 195 FLREIIDEVKQVWDGPLFVRVSASDYTDKGLDIADHIGFAKWMKEQGVDLIDCSSGALVHADINVFPGYQVSFAEKIREQ 274 (337)
T ss_dssp HHHHHHHHHHHHCCSCEEEEEECCCCSTTSCCHHHHHHHHHHHHHTTCCEEEEECCCSSCCCCCCCTTTTHHHHHHHHHH
T ss_pred HHHHHHHHHhhhhcccceEEecccccccCccchhhhHHHHHHHHHcCCcccccccccccccccccCCcccHHHHHHHHHh
Confidence 46788999999999999999652 3444 899999999986432211 11121 34555677777
Q ss_pred cCCCceEEEecCCCCHHHHHHHHHhC-cCEEEecHHHHH
Q 017781 273 TQGRIPVFLDGGVRRGTDVFKALALG-ASGIFIGRPVVY 310 (366)
Q Consensus 273 ~~~~i~vi~~GGI~~~~dv~kalalG-Ad~V~igr~~l~ 310 (366)
+ ++||++.|+|.+++++.++|+.| ||+|++||+||.
T Consensus 275 ~--~~pvi~~G~i~~~~~ae~~l~~g~~D~V~~gR~~ia 311 (337)
T d1z41a1 275 A--DMATGAVGMITDGSMAEEILQNGRADLIFIGRELLR 311 (337)
T ss_dssp H--CCEEEECSSCCSHHHHHHHHHTTSCSEEEECHHHHH
T ss_pred c--CceEEEeCCcCCHHHHHHHHHCCCcceehhhHHHHh
Confidence 7 79999999999999999999999 999999999986
|
| >d1ps9a1 c.1.4.1 (A:1-330) 2,4-dienoyl-CoA reductase, N-terminal domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: FMN-linked oxidoreductases family: FMN-linked oxidoreductases domain: 2,4-dienoyl-CoA reductase, N-terminal domain species: Escherichia coli [TaxId: 562]
Probab=99.00 E-value=3e-09 Score=100.20 Aligned_cols=97 Identities=15% Similarity=0.110 Sum_probs=70.3
Q ss_pred CCHHHHHHHHHhc--CCCEEEEec--------cCHHH--------HHcCCcEEEEcCCCc--cCCCC-C--c-c-hHHHH
Q 017781 212 LSWKDVKWLQTIT--KLPILVKGV--------LTAED--------VQAGAAGIIVSNHGA--RQLDY-V--P-A-TIMAL 266 (366)
Q Consensus 212 ~~~~~i~~lr~~~--~~pv~vK~v--------~~~~d--------~~aGad~I~vs~~gg--~~~~~-~--~-~-~~~~l 266 (366)
+..+.|+.+|+.+ +.||.+|.. .+.++ .++|+|.+.++..+. ..... . + . .....
T Consensus 193 f~~Eii~air~~vg~d~~v~~R~s~~d~~~~g~~~~~~~~~~~~l~~~g~d~~~~~~g~~~~~~~~~~~~~~~~~~~~~~ 272 (330)
T d1ps9a1 193 FAVEVVRAVRERVGNDFIIIYRLSMLDLVEDGGTFAETVELAQAIEAAGATIINTGIGWHEARIPTIATPVPRGAFSWVT 272 (330)
T ss_dssp HHHHHHHHHHHHHCSSSEEEEEEEEECCSTTCCCHHHHHHHHHHHHHHTCSEEEEEECBTTCSSCSSSTTSCTTTTHHHH
T ss_pred HHHHHHHHHHHHcCCCceeEecccccccccCCCCHHHHHHHHHHHHHhhhhhhhcccccccccccccCCCCcchhHHHHH
Confidence 4678899999998 467888754 24444 778999999875322 11111 1 1 1 12334
Q ss_pred HHHHHHcCCCceEEEecCCCCHHHHHHHHHhC-cCEEEecHHHHH
Q 017781 267 EEVVKATQGRIPVFLDGGVRRGTDVFKALALG-ASGIFIGRPVVY 310 (366)
Q Consensus 267 ~~i~~~~~~~i~vi~~GGI~~~~dv~kalalG-Ad~V~igr~~l~ 310 (366)
.++++.+ ++|||+.|+|.+++++.++|+.| ||+|++||+||.
T Consensus 273 ~~ik~~~--~~pvi~~G~i~~~~~ae~~l~~g~~D~V~~gR~~ia 315 (330)
T d1ps9a1 273 RKLKGHV--SLPLVTTNRINDPQVADDILSRGDADMVSMARPFLA 315 (330)
T ss_dssp HHHTTSC--SSCEEECSSCCSHHHHHHHHHTTSCSEEEESTHHHH
T ss_pred HHHHhhC--CceEEEeCCCCCHHHHHHHHHCCCcchhHhhHHHHh
Confidence 4555555 79999999999999999999999 999999999985
|
| >d1djqa1 c.1.4.1 (A:1-340) Trimethylamine dehydrogenase, N-terminal domain {Methylophilus methylotrophus, w3a1 [TaxId: 17]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: FMN-linked oxidoreductases family: FMN-linked oxidoreductases domain: Trimethylamine dehydrogenase, N-terminal domain species: Methylophilus methylotrophus, w3a1 [TaxId: 17]
Probab=98.99 E-value=1.5e-09 Score=102.82 Aligned_cols=97 Identities=15% Similarity=0.087 Sum_probs=70.7
Q ss_pred CCHHHHHHHHHhc--CCCEEEEecc---------CHH-H-------HHcCCcEEEEcCCCcc----CCC-----CCcchH
Q 017781 212 LSWKDVKWLQTIT--KLPILVKGVL---------TAE-D-------VQAGAAGIIVSNHGAR----QLD-----YVPATI 263 (366)
Q Consensus 212 ~~~~~i~~lr~~~--~~pv~vK~v~---------~~~-d-------~~aGad~I~vs~~gg~----~~~-----~~~~~~ 263 (366)
+..+.++.+|+.+ +.||.+|... ..+ + .+.|+|.+.||...-. ... .....+
T Consensus 201 f~~EIi~aIr~~vg~~~~i~~R~s~~~~~~~~~~~~e~~~~~~~~l~~~~vd~~~vs~g~~~~~~~~~~~~~~~~~~~~~ 280 (340)
T d1djqa1 201 FWLETLEKVKHAVGSDCAIATRFGVDTVYGPGQIEAEVDGQKFVEMADSLVDMWDITIGDIAEWGEDAGPSRFYQQGHTI 280 (340)
T ss_dssp HHHHHHHHHHHHHTTTSEEEEEEEEECSSCTTSCCTTTHHHHHHHHHTTTCSEEEEEESCSTTGGGTSCCTTTCCTTTTH
T ss_pred HHHHHHHHHHHHHhhhhhceeeccccccccCCCCchhhhHHHHHHHHhhccceeeeeecccccccccccccccCCccccH
Confidence 4678899999999 5788998541 111 1 7899999998753211 100 011133
Q ss_pred HHHHHHHHHcCCCceEEEecCCCCHHHHHHHHHhC-cCEEEecHHHHH
Q 017781 264 MALEEVVKATQGRIPVFLDGGVRRGTDVFKALALG-ASGIFIGRPVVY 310 (366)
Q Consensus 264 ~~l~~i~~~~~~~i~vi~~GGI~~~~dv~kalalG-Ad~V~igr~~l~ 310 (366)
.....+++.+ ++|||+.|||++++++.++|+.| ||+|++|||||.
T Consensus 281 ~~~~~ik~~~--~~pVi~~G~i~~~~~a~~~l~~G~aDlV~~gR~~ia 326 (340)
T d1djqa1 281 PWVKLVKQVS--KKPVLGVGRYTDPEKMIEIVTKGYADIIGCARPSIA 326 (340)
T ss_dssp HHHHHHHTTC--SSCEEECSCCCCHHHHHHHHHTTSCSBEEESHHHHH
T ss_pred HHHHHHHHHc--CCeEEEECCCCCHHHHHHHHHCCCccchhhHHHHHH
Confidence 4455566555 79999999999999999999999 999999999975
|
| >d1vyra_ c.1.4.1 (A:) Pentaerythritol tetranirate reductase {Enterobacter cloacae [TaxId: 550]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: FMN-linked oxidoreductases family: FMN-linked oxidoreductases domain: Pentaerythritol tetranirate reductase species: Enterobacter cloacae [TaxId: 550]
Probab=98.54 E-value=2.4e-06 Score=80.95 Aligned_cols=94 Identities=14% Similarity=0.044 Sum_probs=66.8
Q ss_pred CCHHHHHHHHHhcC-CCEEEEecc------------CHHH--------HHcCCcEEEEcCCCccCCCCCcc-hHHHHHHH
Q 017781 212 LSWKDVKWLQTITK-LPILVKGVL------------TAED--------VQAGAAGIIVSNHGARQLDYVPA-TIMALEEV 269 (366)
Q Consensus 212 ~~~~~i~~lr~~~~-~pv~vK~v~------------~~~d--------~~aGad~I~vs~~gg~~~~~~~~-~~~~l~~i 269 (366)
+..+.++.+|+.++ -+|.++... +.++ .++|+|++.+|... ...+++ ....-..+
T Consensus 212 f~~Eii~aIr~~~g~d~i~~r~s~~~~~~~~~~gg~~~~e~~~~~~~l~~~gvd~i~vs~~~---~~~~~~~~~~~~~~~ 288 (363)
T d1vyra_ 212 LVLEVVDAVCNEWSADRIGIRVSPIGTFQNVDNGPNEEADALYLIEELAKRGIAYLHMSETD---LAGGKPYSEAFRQKV 288 (363)
T ss_dssp HHHHHHHHHHHHSCGGGEEEEECCSSCBTTBCCCTTHHHHHHHHHHHHHHTTCSEEEEECCB---TTBCCCCCHHHHHHH
T ss_pred hHHHHHhhhhhhcCCCCcceeecccccccchhhcccchHHHHHHHHHHHhcCCeeeecccCC---ccCCccccHHHHHHH
Confidence 46788999999984 357777542 1223 78899999998532 122222 22334556
Q ss_pred HHHcCCCceEEEecCCCCHHHHHHHHHhC-cCEEEecHHHHHH
Q 017781 270 VKATQGRIPVFLDGGVRRGTDVFKALALG-ASGIFIGRPVVYS 311 (366)
Q Consensus 270 ~~~~~~~i~vi~~GGI~~~~dv~kalalG-Ad~V~igr~~l~~ 311 (366)
++.+ ++||++.| +.+++++.++|+.| ||+|++||++|..
T Consensus 289 ~~~~--~~~vi~~G-~~t~~~ae~~l~~G~~DlV~~gR~liad 328 (363)
T d1vyra_ 289 RERF--HGVIIGAG-AYTAEKAEDLIGKGLIDAVAFGRDYIAN 328 (363)
T ss_dssp HHHC--CSEEEEES-SCCHHHHHHHHHTTSCSEEEESHHHHHC
T ss_pred HHhc--CceEEecC-CCCHHHHHHHHHCCCcceehhhHHHHHC
Confidence 6666 67887765 66999999999999 8999999999863
|
| >d1icpa_ c.1.4.1 (A:) 12-oxophytodienoate reductase (OPR, OYE homolog) {Tomato (Lycopersicon esculentum), OPR1 [TaxId: 4081]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: FMN-linked oxidoreductases family: FMN-linked oxidoreductases domain: 12-oxophytodienoate reductase (OPR, OYE homolog) species: Tomato (Lycopersicon esculentum), OPR1 [TaxId: 4081]
Probab=98.51 E-value=9.7e-07 Score=83.70 Aligned_cols=97 Identities=15% Similarity=0.006 Sum_probs=61.6
Q ss_pred CCHHHHHHHHHhcC-CCEEEEecc---------CHHH----------HHcCCcEEEEcCCCccCCCCCcchHHHHHHHHH
Q 017781 212 LSWKDVKWLQTITK-LPILVKGVL---------TAED----------VQAGAAGIIVSNHGARQLDYVPATIMALEEVVK 271 (366)
Q Consensus 212 ~~~~~i~~lr~~~~-~pv~vK~v~---------~~~d----------~~aGad~I~vs~~gg~~~~~~~~~~~~l~~i~~ 271 (366)
+..+.|+.+|+.++ -+++++... +.++ ...+++.+.++...-..........+....+++
T Consensus 210 f~~Eii~aIr~~~g~~~i~~r~s~~~~~~~~g~~~~~~~~l~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ 289 (364)
T d1icpa_ 210 FALEIVEAVANEIGSDRVGIRISPFAHYNEAGDTNPTALGLYMVESLNKYDLAYCHVVEPRMKTAWEKIECTESLVPMRK 289 (364)
T ss_dssp HHHHHHHHHHHHHCGGGEEEEECTTCCTTTCCCSCHHHHHHHHHHHHGGGCCSEEEEECCSCCC------CCCCSHHHHH
T ss_pred HHHHHhhhhhcccCCcceeEEecccccccCCcCcchHHHHHHHHHHhhccceeeeeeecCcccccccccccHHHHHHHHH
Confidence 46688999999984 467777542 1111 445555565543211111011111223445667
Q ss_pred HcCCCceEEEecCCCCHHHHHHHHHhC-cCEEEecHHHHHH
Q 017781 272 ATQGRIPVFLDGGVRRGTDVFKALALG-ASGIFIGRPVVYS 311 (366)
Q Consensus 272 ~~~~~i~vi~~GGI~~~~dv~kalalG-Ad~V~igr~~l~~ 311 (366)
.+ +.|+++.||+ +++++.++|+-| ||+|++||++|.-
T Consensus 290 ~~--~~~vi~~g~~-~~~~ae~~l~~g~aD~V~~gR~~iad 327 (364)
T d1icpa_ 290 AY--KGTFIVAGGY-DREDGNRALIEDRADLVAYGRLFISN 327 (364)
T ss_dssp HC--CSCEEEESSC-CHHHHHHHHHTTSCSEEEESHHHHHC
T ss_pred hc--CCCEEEECCC-CHHHHHHHHHcCCCceehhHHHHHHC
Confidence 76 7899998876 789999999987 9999999999863
|
| >d1gwja_ c.1.4.1 (A:) Morphinone reductase {Pseudomonas putida [TaxId: 303]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: FMN-linked oxidoreductases family: FMN-linked oxidoreductases domain: Morphinone reductase species: Pseudomonas putida [TaxId: 303]
Probab=98.44 E-value=4e-06 Score=79.64 Aligned_cols=96 Identities=13% Similarity=0.025 Sum_probs=66.4
Q ss_pred CCHHHHHHHHHhcC-CCEEEEeccC----------HHH---------HHcCCcEEEEcCCCccCCCCCcchHHHHHHHHH
Q 017781 212 LSWKDVKWLQTITK-LPILVKGVLT----------AED---------VQAGAAGIIVSNHGARQLDYVPATIMALEEVVK 271 (366)
Q Consensus 212 ~~~~~i~~lr~~~~-~pv~vK~v~~----------~~d---------~~aGad~I~vs~~gg~~~~~~~~~~~~l~~i~~ 271 (366)
+..+.|+.+|+.++ ..|+++.... .+. ...|+|.+.++...-.......+ ......+++
T Consensus 215 f~~EIi~aIR~~vg~~~v~~r~~~~~~~~g~~~~~~~~~~~~~~~~ld~~~i~~~~~~~~~~~~~~~~~~-~~~~~~i~~ 293 (374)
T d1gwja_ 215 FPLEVVDAVAEVFGPERVGIRLTPFLELFGLTDDEPEAMAFYLAGELDRRGLAYLHFNEPDWIGGDITYP-EGFREQMRQ 293 (374)
T ss_dssp HHHHHHHHHHHHHCGGGEEEEECTTCCCTTCCCSCHHHHHHHHHHHHHHHTCSEEEEECSCBTTBCCCCC-TTHHHHHHH
T ss_pred hHHHHHHHHHHHcCCcceeeeeeeeccccCCcccchHHHHHHhhccccccCceEEEeccCcccCCCcchh-HHHHHHHHH
Confidence 56788999999984 4566664421 111 56799999887532111111111 112345667
Q ss_pred HcCCCceEEEecCCCCHHHHHHHHHhC-cCEEEecHHHHHH
Q 017781 272 ATQGRIPVFLDGGVRRGTDVFKALALG-ASGIFIGRPVVYS 311 (366)
Q Consensus 272 ~~~~~i~vi~~GGI~~~~dv~kalalG-Ad~V~igr~~l~~ 311 (366)
.+ ++|||+.|+| +++.+.++|+-| ||+|++||++|..
T Consensus 294 ~~--~~pvi~~G~i-~~~~ae~~l~~g~aDlV~~gR~~iad 331 (374)
T d1gwja_ 294 RF--KGGLIYCGNY-DAGRAQARLDDNTADAVAFGRPFIAN 331 (374)
T ss_dssp HC--CSEEEEESSC-CHHHHHHHHHTTSCSEEEESHHHHHC
T ss_pred Hc--CCCEEEECCc-CHHHHHHHHHcCCCcEehhhHHHHHC
Confidence 77 8999999999 799999999998 9999999999863
|
| >d1rd5a_ c.1.2.4 (A:) Trp synthase alpha-subunit {Maize (Zea mays) [TaxId: 4577]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Ribulose-phoshate binding barrel family: Tryptophan biosynthesis enzymes domain: Trp synthase alpha-subunit species: Maize (Zea mays) [TaxId: 4577]
Probab=98.38 E-value=1.4e-05 Score=71.92 Aligned_cols=70 Identities=29% Similarity=0.412 Sum_probs=51.4
Q ss_pred HHHHHHHHHHcCCCceEEEecCCCCHHHHHHHHHhCcCEEEecHHHHHHhhhcC--HHHHHHHHHHHHHHHHHHH
Q 017781 263 IMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFIGRPVVYSLAAEG--EKGVRRVLEMLREEFELAM 335 (366)
Q Consensus 263 ~~~l~~i~~~~~~~i~vi~~GGI~~~~dv~kalalGAd~V~igr~~l~~l~~~G--~~gv~~~~~~l~~el~~~m 335 (366)
.+.+.++++.. ++||++--||++++|+.+....|||+|.||++++.-+.... .+++ +.++.+.++|+..+
T Consensus 189 ~~~i~~ik~~t--~~Pi~vGFGI~~~e~v~~~~~~gaDGvIVGSaiv~~i~~~~~~~~~~-~~~~~~~~~lk~al 260 (261)
T d1rd5a_ 189 ESLIQEVKKVT--NKPVAVGFGISKPEHVKQIAQWGADGVIIGSAMVRQLGEAASPKQGL-RRLEEYARGMKNAL 260 (261)
T ss_dssp HHHHHHHHHHC--SSCEEEESCCCSHHHHHHHHHTTCSEEEECHHHHHHHHSSSSHHHHH-HHHHHHHHHHHHHH
T ss_pred HHHHHHhhhcc--CCCeEEEcCCCCHHHHHHHHhcCCCEEEECHHHHHHHHHcCCHHHHH-HHHHHHHHHHHHhh
Confidence 35677777665 89999999999999999999999999999999987654322 2222 33455555555543
|
| >d1qopa_ c.1.2.4 (A:) Trp synthase alpha-subunit {Salmonella typhimurium [TaxId: 90371]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Ribulose-phoshate binding barrel family: Tryptophan biosynthesis enzymes domain: Trp synthase alpha-subunit species: Salmonella typhimurium [TaxId: 90371]
Probab=98.38 E-value=1.2e-05 Score=72.83 Aligned_cols=151 Identities=15% Similarity=0.175 Sum_probs=96.9
Q ss_pred cCCHHHHHHHHHHHHHcCCCEEEEecCCCCCcchhHHHhhhcCCCCccccccccccccCCCccc-cc-hhhHHHhhhccC
Q 017781 132 YKDRNVVAQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLTLKNFQGLDLGKMDEA-ND-SGLAAYVAGQID 209 (366)
Q Consensus 132 ~~d~~~~~~~l~ra~~~G~~ai~vtvd~p~~g~r~~d~~~~~~~p~~~~~~~~~~~~~~~~~~~-~~-~~~~~~~~~~~d 209 (366)
..|.+.+.++++.+.++|++.+-+.+-.. =| ++++ .. .+....+.....
T Consensus 27 ~P~~~~~~~~~~~l~~~GaDiiElGiPfS--------------DP---------------~aDGpvIq~a~~~al~~G~~ 77 (267)
T d1qopa_ 27 DPGIEQSLKIIDTLIDAGADALELGVPFS--------------DP---------------LADGPTIQNANLRAFAAGVT 77 (267)
T ss_dssp SSCHHHHHHHHHHHHHTTCSSEEEECCCS--------------CC---------------TTCCHHHHHHHHHHHHTTCC
T ss_pred CCCHHHHHHHHHHHHHcCCCEEEECCCCC--------------cc---------------cccchHHHhhhhhcccccch
Confidence 35678889999999999999998754211 01 0000 00 011122222122
Q ss_pred CCCCHHHHHHHHHhc-CCCEEEEecc------CHHH-----HHcCCcEEEEcCCCcc------------C----------
Q 017781 210 RSLSWKDVKWLQTIT-KLPILVKGVL------TAED-----VQAGAAGIIVSNHGAR------------Q---------- 255 (366)
Q Consensus 210 ~~~~~~~i~~lr~~~-~~pv~vK~v~------~~~d-----~~aGad~I~vs~~gg~------------~---------- 255 (366)
....++.++.+|+.. +.|+++=+-. ..+. .++|+|++++---... .
T Consensus 78 ~~~~~~~~~~~r~~~~~~pivlm~Y~N~i~~~G~~~f~~~~~~~Gv~GliipDlP~ee~~~~~~~~~~~~l~~I~lvaPt 157 (267)
T d1qopa_ 78 PAQCFEMLAIIREKHPTIPIGLLMYANLVFNNGIDAFYARCEQVGVDSVLVADVPVEESAPFRQAALRHNIAPIFICPPN 157 (267)
T ss_dssp HHHHHHHHHHHHHHCSSSCEEEEECHHHHHTTCHHHHHHHHHHHTCCEEEETTCCGGGCHHHHHHHHHTTCEEECEECTT
T ss_pred hhhhhhhhhhhcccccccceEEEeeccchhhcCchHHHHHHHhcCCCceeccchhhhhhHHHHHhhhccCceEEEEeccc
Confidence 223456788888875 6898877532 2233 8899999987421100 0
Q ss_pred ------------------------CCCCc-----chHHHHHHHHHHcCCCceEEEecCCCCHHHHHHHHHhCcCEEEecH
Q 017781 256 ------------------------LDYVP-----ATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFIGR 306 (366)
Q Consensus 256 ------------------------~~~~~-----~~~~~l~~i~~~~~~~i~vi~~GGI~~~~dv~kalalGAd~V~igr 306 (366)
..+.. ...+.+.++++.. ++||++--||++++|+.+++..|||+|.||+
T Consensus 158 t~~~Ri~~i~~~a~gFiY~vs~~GvTG~~~~~~~~~~~~i~~ik~~t--~~Pv~vGFGI~~~e~v~~~~~~~ADGvIVGS 235 (267)
T d1qopa_ 158 ADDDLLRQVASYGRGYTYLLSRSGVTGAENRGALPLHHLIEKLKEYH--AAPALQGFGISSPEQVSAAVRAGAAGAISGS 235 (267)
T ss_dssp CCHHHHHHHHHHCCSCEEEESSSSCCCSSSCC--CCHHHHHHHHHTT--CCCEEEESSCCSHHHHHHHHHTTCSEEEECH
T ss_pred ccHHHHHHHHhhCchhhhhhcccccCCcccccchhHHHHHHHHhhhc--cCCceeecccCCHHHHHHHHhcCCCEEEECH
Confidence 00111 1235566776655 8999999999999999999999999999999
Q ss_pred HHHHHhh
Q 017781 307 PVVYSLA 313 (366)
Q Consensus 307 ~~l~~l~ 313 (366)
+++.-+.
T Consensus 236 Aivk~i~ 242 (267)
T d1qopa_ 236 AIVKIIE 242 (267)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 9988654
|
| >d1mzha_ c.1.10.1 (A:) Deoxyribose-phosphate aldolase DeoC {Aquifex aeolicus [TaxId: 63363]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Aldolase family: Class I aldolase domain: Deoxyribose-phosphate aldolase DeoC species: Aquifex aeolicus [TaxId: 63363]
Probab=98.26 E-value=1.2e-05 Score=70.85 Aligned_cols=89 Identities=25% Similarity=0.238 Sum_probs=67.0
Q ss_pred HHHHHHHHHhcCCCEEEEec-----cCHHH--------HHcCCcEEEEcCCCccCCCCCcchHHHHHHHHHHcCCCceEE
Q 017781 214 WKDVKWLQTITKLPILVKGV-----LTAED--------VQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVF 280 (366)
Q Consensus 214 ~~~i~~lr~~~~~pv~vK~v-----~~~~d--------~~aGad~I~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~i~vi 280 (366)
.++++.+++..+.+ ++|.+ ++.++ .++|+|+|..|...+ .+..+.+.+..+++.+++++.|=
T Consensus 105 ~~ei~~v~~~~~~~-~lKVIlEt~~L~~~ei~~a~~~a~~aGadfiKTSTG~~----~~gat~e~v~~m~~~~~~~~~iK 179 (225)
T d1mzha_ 105 VEELKEIFRETPSA-VHKVIVETPYLNEEEIKKAVEICIEAGADFIKTSTGFA----PRGTTLEEVRLIKSSAKGRIKVK 179 (225)
T ss_dssp HHHHHHHHHTCTTS-EEEEECCGGGCCHHHHHHHHHHHHHHTCSEEECCCSCS----SSCCCHHHHHHHHHHHTTSSEEE
T ss_pred HHHHHHHHHhccCc-eeehhhhhccCCHHHHHHHHHHHHHcccceEeecCCCC----CCCCCHHHHHHHHHHhCCCceEE
Confidence 35577777776544 56866 34444 999999999876422 12356677777777777889999
Q ss_pred EecCCCCHHHHHHHHHhCcCEEEecHH
Q 017781 281 LDGGVRRGTDVFKALALGASGIFIGRP 307 (366)
Q Consensus 281 ~~GGI~~~~dv~kalalGAd~V~igr~ 307 (366)
++||||+.+|+.+.+.+||+.++..+.
T Consensus 180 asGGIrt~~~a~~~i~~Ga~RiGtSs~ 206 (225)
T d1mzha_ 180 ASGGIRDLETAISMIEAGADRIGTSSG 206 (225)
T ss_dssp EESSCCSHHHHHHHHHTTCSEEEESCH
T ss_pred CcCCCCCHHHHHHHHHhchhheecCcH
Confidence 999999999999999999998766543
|
| >d1wa3a1 c.1.10.1 (A:2-203) KDPG aldolase {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Aldolase family: Class I aldolase domain: KDPG aldolase species: Thermotoga maritima [TaxId: 2336]
Probab=98.25 E-value=5.3e-06 Score=72.03 Aligned_cols=167 Identities=11% Similarity=0.082 Sum_probs=104.3
Q ss_pred EEEeeecCCHHHHHHHHHHHHHcCCCEEEEecCCCCCcchhHHHhhhcCCCCccccccccccccCCCccccchhhHHHhh
Q 017781 126 FFQLYVYKDRNVVAQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLTLKNFQGLDLGKMDEANDSGLAAYVA 205 (366)
Q Consensus 126 ~~Qly~~~d~~~~~~~l~ra~~~G~~ai~vtvd~p~~g~r~~d~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 205 (366)
.+.+....+.+....+++.+.+.|++.+-||+++|..-.-.++++..+. | .+.+. ..........+........++
T Consensus 11 iipvlr~~~~~~a~~~~~al~~~Gi~~iEitlr~p~a~~~i~~l~~~~~-~-~~~vG-aGTV~~~~~~~~a~~aGa~fi- 86 (202)
T d1wa3a1 11 IVAVLRANSVEEAKEKALAVFEGGVHLIEITFTVPDADTVIKELSFLKE-K-GAIIG-AGTVTSVEQCRKAVESGAEFI- 86 (202)
T ss_dssp EEEEECCSSHHHHHHHHHHHHHTTCCEEEEETTSTTHHHHHHHTHHHHH-T-TCEEE-EESCCSHHHHHHHHHHTCSEE-
T ss_pred EEEEEECCCHHHHHHHHHHHHHcCCCEEEEecCCccHHHHHHHHHHhcC-C-CcEEE-ecccccHHHHHHHHhhcccEE-
Confidence 4555557788888889999999999999999999865443344442221 1 11100 000000000000000011111
Q ss_pred hccCCCCCHHHHHHHHHhcCCCEEEEeccCHHH----HHcCCcEEEEcCCCccCCCCCcchHHHHHHHHHHcCCCceEEE
Q 017781 206 GQIDRSLSWKDVKWLQTITKLPILVKGVLTAED----VQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFL 281 (366)
Q Consensus 206 ~~~d~~~~~~~i~~lr~~~~~pv~vK~v~~~~d----~~aGad~I~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~i~vi~ 281 (366)
..|.++.+.++..++. ++| ++=|+.|+.+ .++|+|.+.+.... ..|+ ..++.+..-++ ++|++.
T Consensus 87 --vsP~~~~~v~~~~~~~-~i~-~iPGv~TpsEi~~A~~~G~~~lK~fPa~----~~G~---~~lk~l~~p~p-~i~~ip 154 (202)
T d1wa3a1 87 --VSPHLDEEISQFCKEK-GVF-YMPGVMTPTELVKAMKLGHTILKLFPGE----VVGP---QFVKAMKGPFP-NVKFVP 154 (202)
T ss_dssp --ECSSCCHHHHHHHHHH-TCE-EECEECSHHHHHHHHHTTCCEEEETTHH----HHHH---HHHHHHHTTCT-TCEEEE
T ss_pred --eCCCCcHHHHHHHHhc-CCc-eeCCcCcHHHHHHHHHCCCCEEEecchh----hcCH---HHHHHHhCccc-CCcEEe
Confidence 1355666777777764 665 4457888877 99999999985421 0122 34555544443 799999
Q ss_pred ecCCCCHHHHHHHHHhCcCEEEecHHHH
Q 017781 282 DGGVRRGTDVFKALALGASGIFIGRPVV 309 (366)
Q Consensus 282 ~GGI~~~~dv~kalalGAd~V~igr~~l 309 (366)
+||| +.+++...+.+||.+|++|+.+.
T Consensus 155 tGGI-~~~n~~~~l~aga~avg~Gs~l~ 181 (202)
T d1wa3a1 155 TGGV-NLDNVCEWFKAGVLAVGVGSALV 181 (202)
T ss_dssp BSSC-CTTTHHHHHHHTCSCEEECHHHH
T ss_pred eCCC-CHHHHHHHHHCCCeEEEEchhhc
Confidence 9999 78999999999999999998765
|
| >d1o0ya_ c.1.10.1 (A:) Deoxyribose-phosphate aldolase DeoC {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Aldolase family: Class I aldolase domain: Deoxyribose-phosphate aldolase DeoC species: Thermotoga maritima [TaxId: 2336]
Probab=98.24 E-value=1.2e-05 Score=71.97 Aligned_cols=180 Identities=18% Similarity=0.206 Sum_probs=106.1
Q ss_pred CCCHHHHhccCCCceEEEeeecCCHHHHHHHHHHHHHcCCCEEEEecCCCCCcchhHHHhhhcCCCCccccccccccccC
Q 017781 111 TSSVEEVASTGPGIRFFQLYVYKDRNVVAQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLTLKNFQGLDLG 190 (366)
Q Consensus 111 ~~~~e~i~~~~~~~~~~Qly~~~d~~~~~~~l~ra~~~G~~ai~vtvd~p~~g~r~~d~~~~~~~p~~~~~~~~~~~~~~ 190 (366)
..++++++..... --|-+....+.+.+++++|.+.|+.+++|. |..-...++...+-. +.+..+.+|+..
T Consensus 29 ~~~~~~la~~ID~---TlL~p~~t~e~i~~lc~~A~~~~~aaVcV~---P~~v~~a~~~L~gs~----v~v~tVigFP~G 98 (251)
T d1o0ya_ 29 SAGIEDVKSAIEH---TNLKPFATPDDIKKLCLEARENRFHGVCVN---PCYVKLAREELEGTD----VKVVTVVGFPLG 98 (251)
T ss_dssp CCCHHHHHHHEEE---EECCTTCCHHHHHHHHHHHHHHTCSEEEEC---GGGHHHHHHHHTTSC----CEEEEEESTTTC
T ss_pred hhCHHHHHHhccc---cCCCCCCCHHHHHHHHHHHhhcCceEEEEC---HHHHHHHHHHhcCCC----ceEEeeccCCCC
Confidence 3577888764321 113345668889999999999999999984 332222333222211 111111222211
Q ss_pred CCcc-ccc--------hhhHH--------HhhhccCCCCCHHHHHHHHHhcCCCEEEEecc-----CHHH--------HH
Q 017781 191 KMDE-AND--------SGLAA--------YVAGQIDRSLSWKDVKWLQTITKLPILVKGVL-----TAED--------VQ 240 (366)
Q Consensus 191 ~~~~-~~~--------~~~~~--------~~~~~~d~~~~~~~i~~lr~~~~~pv~vK~v~-----~~~d--------~~ 240 (366)
.... ... .+..+ ++. .++.....++|+.+++..+ ...+|.++ +.++ .+
T Consensus 99 ~~~~~~K~~Ea~~Ai~~GAdEID~Vin~~~l~-~g~~~~v~~ei~~v~~~~~-~~~lKVIlEt~~L~~~e~~~a~~ia~~ 176 (251)
T d1o0ya_ 99 ANETRTKAHEAIFAVESGADEIDMVINVGMLK-AKEWEYVYEDIRSVVESVK-GKVVKVIIETCYLDTEEKIAACVISKL 176 (251)
T ss_dssp CSCHHHHHHHHHHHHHHTCSEEEEECCHHHHH-TTCHHHHHHHHHHHHHHTT-TSEEEEECCGGGCCHHHHHHHHHHHHH
T ss_pred CCcHHHHHHHHHHHHHcCCceEEEEeccchhh-cCCHHHHHHHHHHHHHHhc-ccceeeeecccccCcHHHHHHHHHHHH
Confidence 1100 000 00000 111 0111122345777887765 45779773 4443 99
Q ss_pred cCCcEEEEcCCCccCCCCCcchHHHHHHHHHHcCCCceEEEecCCCCHHHHHHHHHhCcCEEEecH
Q 017781 241 AGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFIGR 306 (366)
Q Consensus 241 aGad~I~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~i~vi~~GGI~~~~dv~kalalGAd~V~igr 306 (366)
+|+|+|..|...+ .+..+.+.+..+++.+++++.|=++|||||.+|+.+.+.+||+.++..+
T Consensus 177 aGadfvKTSTGf~----~~gat~e~V~~m~~~~~~~~giKasGGIrt~~~a~~~i~aGa~riGtSs 238 (251)
T d1o0ya_ 177 AGAHFVKTSTGFG----TGGATAEDVHLMKWIVGDEMGVKASGGIRTFEDAVKMIMYGADRIGTSS 238 (251)
T ss_dssp TTCSEEECCCSSS----SCCCCHHHHHHHHHHHCTTSEEEEESSCCSHHHHHHHHHTTCSEEEESC
T ss_pred hCcceeeccCCCC----CCCcCHHHHHHHHHHhCCCceEeccCCcCCHHHHHHHHHHhhHHhCCCc
Confidence 9999999876422 2335666666666677778999999999999999999999999876543
|
| >d1ub3a_ c.1.10.1 (A:) Deoxyribose-phosphate aldolase DeoC {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Aldolase family: Class I aldolase domain: Deoxyribose-phosphate aldolase DeoC species: Thermus thermophilus [TaxId: 274]
Probab=98.20 E-value=1.8e-05 Score=69.05 Aligned_cols=89 Identities=21% Similarity=0.269 Sum_probs=68.0
Q ss_pred HHHHHHHHHhcCCCEEEEec-----cCHHH--------HHcCCcEEEEcCCCccCCCCCcchHHHHHHHHHHcCCCceEE
Q 017781 214 WKDVKWLQTITKLPILVKGV-----LTAED--------VQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVF 280 (366)
Q Consensus 214 ~~~i~~lr~~~~~pv~vK~v-----~~~~d--------~~aGad~I~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~i~vi 280 (366)
.++++.+++..+. ..+|.+ ++.++ .++|+|+|..|...+ .+..+.+.+..+++.+++++.|=
T Consensus 105 ~~ei~~v~~~~~~-~~lKVIlEt~~L~~~ei~~a~~~a~~aGadfiKTSTG~~----~~gat~e~v~~m~~~~~~~~~iK 179 (211)
T d1ub3a_ 105 EAEVRAVREAVPQ-AVLKVILETGYFSPEEIARLAEAAIRGGADFLKTSTGFG----PRGASLEDVALLVRVAQGRAQVK 179 (211)
T ss_dssp HHHHHHHHHHSTT-SEEEEECCGGGSCHHHHHHHHHHHHHHTCSEEECCCSSS----SCCCCHHHHHHHHHHHTTSSEEE
T ss_pred HHHHHHHHHhccC-CceEEEeccccCCHHHHHHHHHHHHHhccceEEecCCCC----CCCCCHHHHHHHHHHhCCCceEE
Confidence 3568888887753 467876 35554 999999999876322 12246666667777777889999
Q ss_pred EecCCCCHHHHHHHHHhCcCEEEecHH
Q 017781 281 LDGGVRRGTDVFKALALGASGIFIGRP 307 (366)
Q Consensus 281 ~~GGI~~~~dv~kalalGAd~V~igr~ 307 (366)
++|||||.+++.+.+.+||+-++..+.
T Consensus 180 asGGIrt~~~a~~~l~aGa~riGtSs~ 206 (211)
T d1ub3a_ 180 AAGGIRDRETALRMLKAGASRLGTSSG 206 (211)
T ss_dssp EESSCCSHHHHHHHHHTTCSEEEETTH
T ss_pred CcCCCCCHHHHHHHHHHhhhHhccCcH
Confidence 999999999999999999998876654
|
| >d1q45a_ c.1.4.1 (A:) 12-oxophytodienoate reductase (OPR, OYE homolog) {Thale cress (Arabidopsis thaliana), OPR3 [TaxId: 3702]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: FMN-linked oxidoreductases family: FMN-linked oxidoreductases domain: 12-oxophytodienoate reductase (OPR, OYE homolog) species: Thale cress (Arabidopsis thaliana), OPR3 [TaxId: 3702]
Probab=98.19 E-value=1.7e-05 Score=75.20 Aligned_cols=97 Identities=12% Similarity=0.015 Sum_probs=62.6
Q ss_pred CCHHHHHHHHHhcC-CCEEEEecc----------CHH-------H--------HHcCCcEEEEcCCCccCC---CC---C
Q 017781 212 LSWKDVKWLQTITK-LPILVKGVL----------TAE-------D--------VQAGAAGIIVSNHGARQL---DY---V 259 (366)
Q Consensus 212 ~~~~~i~~lr~~~~-~pv~vK~v~----------~~~-------d--------~~aGad~I~vs~~gg~~~---~~---~ 259 (366)
+..+.|+.+|+.++ -+++++... ... + ...++|.+.++....... .. +
T Consensus 211 f~lEii~aIr~~vg~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~ 290 (380)
T d1q45a_ 211 FLKQVVEGVVSAIGASKVGVRVSPAIDHLDATDSDPLSLGLAVVGMLNKLQGVNGSKLAYLHVTQPRYHAYGQTESGRQG 290 (380)
T ss_dssp HHHHHHHHHHHHHCGGGEEEEECTTCCGGGCCCSCHHHHHHHHHHHHHHHHHTTSSCCSEEEEECCC-------------
T ss_pred hHHHHHHHHHHHccccCceEEEeecccccccccccchhhhhhhhhhhhHhhhhccccceeEEeccCcccccccccccccC
Confidence 46788999999984 344444321 010 0 346788888875322111 00 1
Q ss_pred cc--hHHHHHHHHHHcCCCceEEEecCCCCHHHHHHHHHhC-cCEEEecHHHHHH
Q 017781 260 PA--TIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALG-ASGIFIGRPVVYS 311 (366)
Q Consensus 260 ~~--~~~~l~~i~~~~~~~i~vi~~GGI~~~~dv~kalalG-Ad~V~igr~~l~~ 311 (366)
+. .......+++.+ ++||+++||+ +++.+.++|+.| ||+|++|||||.-
T Consensus 291 ~~~~~~~~~~~ik~~~--~~pv~~~Gg~-~~~~ae~~l~~G~~DlV~~gR~liaD 342 (380)
T d1q45a_ 291 SDEEEAKLMKSLRMAY--NGTFMSSGGF-NKELGMQAVQQGDADLVSYGRLFIAN 342 (380)
T ss_dssp --CHHHHHHHHHHHHS--CSCEEEESSC-CHHHHHHHHHTTSCSEEEESHHHHHC
T ss_pred chhhhHHHHHHHhhcc--CCcEEeCCCC-CHHHHHHHHHcCCccchhhhHHHHHC
Confidence 11 223445556666 7899999998 699999999998 9999999999863
|
| >d1a53a_ c.1.2.4 (A:) Indole-3-glycerophosphate synthase, IPGS {Archaeon Sulfolobus solfataricus [TaxId: 2287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Ribulose-phoshate binding barrel family: Tryptophan biosynthesis enzymes domain: Indole-3-glycerophosphate synthase, IPGS species: Archaeon Sulfolobus solfataricus [TaxId: 2287]
Probab=98.08 E-value=2.6e-05 Score=69.41 Aligned_cols=99 Identities=14% Similarity=0.315 Sum_probs=70.6
Q ss_pred CHHHHHHHHHhcCCCEEEEec-cCHHH----HHcCCcEEEEcCCC--c--------------------------------
Q 017781 213 SWKDVKWLQTITKLPILVKGV-LTAED----VQAGAAGIIVSNHG--A-------------------------------- 253 (366)
Q Consensus 213 ~~~~i~~lr~~~~~pv~vK~v-~~~~d----~~aGad~I~vs~~g--g-------------------------------- 253 (366)
++++++.+++.+++||+.|.. .++.. ..+|||+|.+--.- .
T Consensus 91 s~~dl~~v~~~~~~PiLrKDFIid~~QI~ea~~~GADaiLLI~~~L~~~~l~~l~~~a~~lgl~~LvEvh~~~El~~a~~ 170 (247)
T d1a53a_ 91 SYETLRKIASSVSIPILMKDFIVKESQIDDAYNLGADTVLLIVKILTERELESLLEYARSYGMEPLIEINDENDLDIALR 170 (247)
T ss_dssp CHHHHHHHHHHCCSCEEEESCCCSHHHHHHHHHHTCSEEEEEGGGSCHHHHHHHHHHHHTTTCCCEEEECSHHHHHHHHH
T ss_pred chHHHHHHHhccccceeecccccChHHHHHHHHhhcchhhhhhhhccHHHHHHHHHHHHHHhhhHHhhcCCHHHHHHHHh
Confidence 567888888888888888853 34332 66677776653210 0
Q ss_pred ----------cCCCCCcchHHHHHHHHHHcCCCceEEEecCCCCHHHHHHHHHhCcCEEEecHHHHHH
Q 017781 254 ----------RQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFIGRPVVYS 311 (366)
Q Consensus 254 ----------~~~~~~~~~~~~l~~i~~~~~~~i~vi~~GGI~~~~dv~kalalGAd~V~igr~~l~~ 311 (366)
|.+..-....+...++...++.++.+|+.|||.+.+|+.+...+|||+|.||..+|..
T Consensus 171 ~~a~iIGINnRnL~t~~vd~~~~~~L~~~ip~~~~~IaESGI~t~~dv~~l~~~G~davLIGeaLmk~ 238 (247)
T d1a53a_ 171 IGARFIGINSRDLETLEINKENQRKLISMIPSNVVKVAESGISERNEIEELRKLGVNAFLIGSSLMRN 238 (247)
T ss_dssp TTCSEEEEESBCTTTCCBCHHHHHHHHHHSCTTSEEEEESCCCCHHHHHHHHHTTCCEEEECHHHHHC
T ss_pred CCCCeEeeeccChhhhhhhhhHHHHHHhhCCCCCeEEEecCCCCHHHHHHHHHCCCCEEEECHHHcCC
Confidence 0011112234555566677777899999999999999999999999999999999874
|
| >d1geqa_ c.1.2.4 (A:) Trp synthase alpha-subunit {Archaeon Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Ribulose-phoshate binding barrel family: Tryptophan biosynthesis enzymes domain: Trp synthase alpha-subunit species: Archaeon Pyrococcus furiosus [TaxId: 2261]
Probab=98.06 E-value=6.3e-05 Score=67.03 Aligned_cols=51 Identities=24% Similarity=0.318 Sum_probs=44.3
Q ss_pred hHHHHHHHHHHcCCCceEEEecCCCCHHHHHHHHHhCcCEEEecHHHHHHhhh
Q 017781 262 TIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFIGRPVVYSLAA 314 (366)
Q Consensus 262 ~~~~l~~i~~~~~~~i~vi~~GGI~~~~dv~kalalGAd~V~igr~~l~~l~~ 314 (366)
..+.+.++++.. ++||++--||++++|+.+++..|||+|.+|++++.-+.-
T Consensus 179 ~~~~v~~vk~~t--~~Pv~vGFGI~~~e~v~~~~~~~ADGvIVGSaiv~~i~~ 229 (248)
T d1geqa_ 179 AYDLLRRAKRIC--RNKVAVGFGVSKREHVVSLLKEGANGVVVGSALVKIIGE 229 (248)
T ss_dssp HHHHHHHHHHHC--SSCEEEESCCCSHHHHHHHHHTTCSEEEECHHHHHHHHH
T ss_pred HHHHHHHHhhhc--ccceeeecccCCHHHHHHHHhcCCCEEEECHHHHHHHHH
Confidence 346778888776 799999889999999999999999999999999876543
|
| >d1oyaa_ c.1.4.1 (A:) Old yellow enzyme (OYE) {Lager yeast (Saccharomyces pastorianus) [TaxId: 27292]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: FMN-linked oxidoreductases family: FMN-linked oxidoreductases domain: Old yellow enzyme (OYE) species: Lager yeast (Saccharomyces pastorianus) [TaxId: 27292]
Probab=98.03 E-value=2.5e-05 Score=74.65 Aligned_cols=40 Identities=20% Similarity=0.139 Sum_probs=34.8
Q ss_pred HHHHcCCCceEEEecCCCCHHHHHHHHHhC-cCEEEecHHHHH
Q 017781 269 VVKATQGRIPVFLDGGVRRGTDVFKALALG-ASGIFIGRPVVY 310 (366)
Q Consensus 269 i~~~~~~~i~vi~~GGI~~~~dv~kalalG-Ad~V~igr~~l~ 310 (366)
+++.+ ++|||+.|||.+..++.+.+..| ||+|++||++|.
T Consensus 312 ik~~~--~~PVi~~G~i~~~~~~~~~i~~~~aDlV~~gR~lia 352 (399)
T d1oyaa_ 312 VYSIW--KGPVIRAGNFALHPEVVREEVKDKRTLIGYGRFFIS 352 (399)
T ss_dssp HHHHC--CSCEEEESSCTTCHHHHHHHTTSTTEEEECCHHHHH
T ss_pred HHHHh--CCCEEEECCCCChHHHHHHHHcCCCeEhHHHHHHHH
Confidence 45566 79999999999999998888764 999999999986
|
| >d1vc4a_ c.1.2.4 (A:) Indole-3-glycerophosphate synthase, IPGS {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Ribulose-phoshate binding barrel family: Tryptophan biosynthesis enzymes domain: Indole-3-glycerophosphate synthase, IPGS species: Thermus thermophilus [TaxId: 274]
Probab=97.94 E-value=0.00015 Score=64.49 Aligned_cols=165 Identities=21% Similarity=0.229 Sum_probs=90.1
Q ss_pred HHHHHHHHcCCCEEEEecCCCCCcchhHHHh---hhcCCCCccccccccccccCCCccccchhhHH--HhhhccCCCCCH
Q 017781 140 QLVRRAERAGFKAIALTVDTPRLGRREADIK---NRFTLPPFLTLKNFQGLDLGKMDEANDSGLAA--YVAGQIDRSLSW 214 (366)
Q Consensus 140 ~~l~ra~~~G~~ai~vtvd~p~~g~r~~d~~---~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~d~~~~~ 214 (366)
++.+.-++.|+.+|=|-.|....+....|++ ....+|- -.+.+- +....+.+....|+.. ......+ . ..
T Consensus 69 ~~A~~y~~~GA~aiSVLTe~~~F~Gs~~dl~~v~~~~~iPv--LrKDFI-id~~QI~ea~~~GADaVLLIaall~-~-~l 143 (254)
T d1vc4a_ 69 EAALAYARGGARAVSVLTEPHRFGGSLLDLKRVREAVDLPL--LRKDFV-VDPFMLEEARAFGASAALLIVALLG-E-LT 143 (254)
T ss_dssp HHHHHHHHTTCSEEEEECCCSSSCCCHHHHHHHHHHCCSCE--EEESCC-CSHHHHHHHHHTTCSEEEEEHHHHG-G-GH
T ss_pred HHHHHHHhcCCceEEEEcCcccccccHHHHHHHHHHcCCCc--ccCCcc-ccHHHHHHHHhccchHHHHHHHHHH-H-HH
Confidence 4566778899999988888776665555544 3333441 111110 0000000000000000 0000000 1 11
Q ss_pred HHHHHHHHhcCCCEEEEeccCHHH----HHcCCcEEEEcCCCccCCCCCcchHHHHHHHHHHcCCCceEEEecCCCCHHH
Q 017781 215 KDVKWLQTITKLPILVKGVLTAED----VQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTD 290 (366)
Q Consensus 215 ~~i~~lr~~~~~pv~vK~v~~~~d----~~aGad~I~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~i~vi~~GGI~~~~d 290 (366)
..+-.....++.-++|- +.+.++ .++|++.|-|.|+-=+.+.....+...|.++....+.++.+|+.+||.+..|
T Consensus 144 ~~l~~~A~~lgl~~LVE-vh~~~El~~a~~~~a~iIGINnRdL~t~~vd~~~~~~l~~~i~~~~~~~i~IsESGI~~~~d 222 (254)
T d1vc4a_ 144 GAYLEEARRLGLEALVE-VHTERELEIALEAGAEVLGINNRDLATLHINLETAPRLGRLARKRGFGGVLVAESGYSRKEE 222 (254)
T ss_dssp HHHHHHHHHHTCEEEEE-ECSHHHHHHHHHHTCSEEEEESBCTTTCCBCTTHHHHHHHHHHHTTCCSEEEEESCCCSHHH
T ss_pred HHHHHHHHHhCCceEEE-eccHHHHhhhhcCCCCEEEEeccchhhhhcchHHHHHhhhcccccCCCCEEEEccCCCCHHH
Confidence 12222223346655554 445555 7888888877775433344444444555555544444688999999999999
Q ss_pred HHHHHHhCcCEEEecHHHHHH
Q 017781 291 VFKALALGASGIFIGRPVVYS 311 (366)
Q Consensus 291 v~kalalGAd~V~igr~~l~~ 311 (366)
+ +.+..|+|+|.||..+|.+
T Consensus 223 v-~~l~~g~davLIGesLm~~ 242 (254)
T d1vc4a_ 223 L-KALEGLFDAVLIGTSLMRA 242 (254)
T ss_dssp H-HTTTTTCSEEEECHHHHTS
T ss_pred H-HHHHcCCCEEEEChhhcCC
Confidence 7 5568899999999999864
|
| >d1xm3a_ c.1.31.1 (A:) Thiazole biosynthesis protein ThiG {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: ThiG-like family: ThiG-like domain: Thiazole biosynthesis protein ThiG species: Bacillus subtilis [TaxId: 1423]
Probab=97.88 E-value=3e-05 Score=68.04 Aligned_cols=92 Identities=18% Similarity=0.244 Sum_probs=65.1
Q ss_pred CHHHHHHHHHhcCCCEEEEeccCHHH----HHcCCcEEEEcCCC-ccCCCCCcchHHHHHHHHHHcCCCceEEEecCCCC
Q 017781 213 SWKDVKWLQTITKLPILVKGVLTAED----VQAGAAGIIVSNHG-ARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRR 287 (366)
Q Consensus 213 ~~~~i~~lr~~~~~pv~vK~v~~~~d----~~aGad~I~vs~~g-g~~~~~~~~~~~~l~~i~~~~~~~i~vi~~GGI~~ 287 (366)
+++..+.|.+. +.-|+.=...++.- .++||..|---+.. |+ ..|.-....|..+++.. ++|||+|.||.+
T Consensus 114 tl~Aae~Lv~e-GF~VlpY~~~D~v~ak~Le~~Gc~avMPlgsPIGS--g~Gl~n~~~l~~i~~~~--~vPvIvDAGIG~ 188 (251)
T d1xm3a_ 114 TLKASEQLLEE-GFIVLPYTSDDVVLARKLEELGVHAIMPGASPIGS--GQGILNPLNLSFIIEQA--KVPVIVDAGIGS 188 (251)
T ss_dssp HHHHHHHHHHT-TCCEEEEECSCHHHHHHHHHHTCSCBEECSSSTTC--CCCCSCHHHHHHHHHHC--SSCBEEESCCCS
T ss_pred HHHHHHHHHhC-CcEEEEecCCCHHHHHHHHHcCChhHHHhhhhhhc--CCCcCChHHHHHHHhcC--CccEEEecCCCC
Confidence 44445555443 44444444333322 99999988743321 11 12556777888888776 899999999999
Q ss_pred HHHHHHHHHhCcCEEEecHHHH
Q 017781 288 GTDVFKALALGASGIFIGRPVV 309 (366)
Q Consensus 288 ~~dv~kalalGAd~V~igr~~l 309 (366)
+.|+.+|+++|||+|.+-+++-
T Consensus 189 pSdAa~AMElG~daVLvNTAIA 210 (251)
T d1xm3a_ 189 PKDAAYAMELGADGVLLNTAVS 210 (251)
T ss_dssp HHHHHHHHHTTCSEEEESHHHH
T ss_pred HHHHHHHHHccCCEEEechhhh
Confidence 9999999999999999999874
|
| >d1wv2a_ c.1.31.1 (A:) Thiazole biosynthesis protein ThiG {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: ThiG-like family: ThiG-like domain: Thiazole biosynthesis protein ThiG species: Pseudomonas aeruginosa [TaxId: 287]
Probab=97.73 E-value=4.8e-05 Score=67.16 Aligned_cols=68 Identities=16% Similarity=0.326 Sum_probs=53.3
Q ss_pred HHcCCcEEEEcCCC-ccCCCCCcchHHHHHHHHHHcCCCceEEEecCCCCHHHHHHHHHhCcCEEEecHHHHH
Q 017781 239 VQAGAAGIIVSNHG-ARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFIGRPVVY 310 (366)
Q Consensus 239 ~~aGad~I~vs~~g-g~~~~~~~~~~~~l~~i~~~~~~~i~vi~~GGI~~~~dv~kalalGAd~V~igr~~l~ 310 (366)
.+.|+..+.--+.. |+. .|......+..+++.. ++|||+|+||.++.|+.+||++|||+|.+.+++..
T Consensus 145 e~~Gc~~vMplgsPIGsg--~Gi~n~~~l~~i~~~~--~vpvivdAGIg~psdaa~AMElG~dgVLvnsaIa~ 213 (243)
T d1wv2a_ 145 AEIGCIAVMPLAGLIGSG--LGICNPYNLRIILEEA--KVPVLVDAGVGTASDAAIAMELGCEAVLMNTAIAH 213 (243)
T ss_dssp HHSCCSEEEECSSSTTCC--CCCSCHHHHHHHHHHC--SSCBEEESCCCSHHHHHHHHHHTCSEEEESHHHHT
T ss_pred HHcCceeeeecccccccc--cccccHHHHHhccccC--CcceEeecccCCHHHHHHHHHccCCEEEechHhhc
Confidence 89999988754432 211 2444555676676665 89999999999999999999999999999998754
|
| >d1n7ka_ c.1.10.1 (A:) Deoxyribose-phosphate aldolase DeoC {Archaeon Aeropyrum pernix [TaxId: 56636]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Aldolase family: Class I aldolase domain: Deoxyribose-phosphate aldolase DeoC species: Archaeon Aeropyrum pernix [TaxId: 56636]
Probab=97.71 E-value=0.00019 Score=63.29 Aligned_cols=77 Identities=26% Similarity=0.236 Sum_probs=50.1
Q ss_pred CEEEEec-----cCHHH--------HHcCCcEEEEcCCCccCCCCCcchHHHHHHHHHHcCCCceEEEecCCCCHHHHHH
Q 017781 227 PILVKGV-----LTAED--------VQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFK 293 (366)
Q Consensus 227 pv~vK~v-----~~~~d--------~~aGad~I~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~i~vi~~GGI~~~~dv~k 293 (366)
+..+|.+ ++.++ .++|+|+|.-|...+ .....+.....+.+. ..+.++.|=++|||||.+|+.+
T Consensus 133 g~~lKVIlEt~~L~~~~i~~a~~~a~~aGadFVKTSTG~~-~~gat~~~~~~l~~~--~~~~~vgIKasGGIrt~~~a~~ 209 (234)
T d1n7ka_ 133 GAVVKVILEAPLWDDKTLSLLVDSSRRAGADIVKTSTGVY-TKGGDPVTVFRLASL--AKPLGMGVKASGGIRSGIDAVL 209 (234)
T ss_dssp TCEEEEECCGGGSCHHHHHHHHHHHHHTTCSEEESCCSSS-CCCCSHHHHHHHHHH--HGGGTCEEEEESSCCSHHHHHH
T ss_pred CceEEEEEeccccchHHHHHHHHHHHHhhhhheeeccccc-CCCCCHHHHHHHHHH--hcCCCCcEEeeCCcCCHHHHHH
Confidence 3568866 34443 899999999765311 111112122222222 2234789999999999999999
Q ss_pred HHHhCcCEEEecH
Q 017781 294 ALALGASGIFIGR 306 (366)
Q Consensus 294 alalGAd~V~igr 306 (366)
++.+||+-++..+
T Consensus 210 ~i~aGa~rIGtSs 222 (234)
T d1n7ka_ 210 AVGAGADIIGTSS 222 (234)
T ss_dssp HHHTTCSEEEETT
T ss_pred HHHccCceeecch
Confidence 9999999765543
|
| >d1wbha1 c.1.10.1 (A:1-213) KDPG aldolase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Aldolase family: Class I aldolase domain: KDPG aldolase species: Escherichia coli [TaxId: 562]
Probab=97.70 E-value=0.00027 Score=61.37 Aligned_cols=178 Identities=17% Similarity=0.170 Sum_probs=112.6
Q ss_pred CCHHHHhccCCCceEEEeeecCCHHHHHHHHHHHHHcCCCEEEEecCCCCCcchhHHHhhhcCCCCccccccccccccCC
Q 017781 112 SSVEEVASTGPGIRFFQLYVYKDRNVVAQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLTLKNFQGLDLGK 191 (366)
Q Consensus 112 ~~~e~i~~~~~~~~~~Qly~~~d~~~~~~~l~ra~~~G~~ai~vtvd~p~~g~r~~d~~~~~~~p~~~~~~~~~~~~~~~ 191 (366)
.+.+++....| .+-+....|.+...++++.+.+.|++.+-||+++|..-.....++..| |. +.+. ........
T Consensus 6 ~~~~~~l~~~~---iipvlr~~~~~~a~~~~~al~~~Gi~~iEitl~tp~a~~~I~~l~~~~--p~-~~vG-aGTV~~~~ 78 (213)
T d1wbha1 6 TSAESILTTGP---VVPVIVVKKLEHAVPMAKALVAGGVRVLNVTLRTECAVDAIRAIAKEV--PE-AIVG-AGTVLNPQ 78 (213)
T ss_dssp SCHHHHHHSCS---EEEEECCSSGGGHHHHHHHHHHTTCCEEEEESCSTTHHHHHHHHHHHC--TT-SEEE-EESCCSHH
T ss_pred cCHHHHHHhCC---EEEEEECCCHHHHHHHHHHHHHCCCCEEEEeCCChhHHHHHHHHHHHC--CC-Ceee-ccccccHH
Confidence 45677766543 333445678888889999999999999999999987555555555554 32 1110 00000000
Q ss_pred CccccchhhHHHhhhccCCCCCHHHHHHHHHhcCCCEEEEeccCHHH----HHcCCcEEEEcCCCccCCCCCcchHHHHH
Q 017781 192 MDEANDSGLAAYVAGQIDRSLSWKDVKWLQTITKLPILVKGVLTAED----VQAGAAGIIVSNHGARQLDYVPATIMALE 267 (366)
Q Consensus 192 ~~~~~~~~~~~~~~~~~d~~~~~~~i~~lr~~~~~pv~vK~v~~~~d----~~aGad~I~vs~~gg~~~~~~~~~~~~l~ 267 (366)
..+........++. .|.++.+.++..++. ++| ++=|+.|+.| .++|++.+.+.-... ......++
T Consensus 79 ~~~~a~~aGa~Fiv---SP~~~~~v~~~a~~~-~i~-~iPGv~TpsEi~~A~~~G~~~vKlFPA~~------~Gg~~~lk 147 (213)
T d1wbha1 79 QLAEVTEAGAQFAI---SPGLTEPLLKAATEG-TIP-LIPGISTVSELMLGMDYGLKEFKFFPAEA------NGGVKALQ 147 (213)
T ss_dssp HHHHHHHHTCSCEE---ESSCCHHHHHHHHHS-SSC-EEEEESSHHHHHHHHHTTCCEEEETTTTT------TTHHHHHH
T ss_pred HHHHHHHCCCcEEE---CCCCCHHHHHHHHhc-CCC-ccCCcCCHHHHHHHHHCCCCEEEeccchh------cChHHHHH
Confidence 00000000111211 255677777777774 676 4557888887 999999999865321 11234455
Q ss_pred HHHHHcCCCceEEEecCCCCHHHHHHHHHhCcCEEEecHHHH
Q 017781 268 EVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFIGRPVV 309 (366)
Q Consensus 268 ~i~~~~~~~i~vi~~GGI~~~~dv~kalalGAd~V~igr~~l 309 (366)
.+..-+ .+++++.+|||. .+++...+.+|+.++++|+.+.
T Consensus 148 al~~p~-p~~~~~ptGGV~-~~n~~~yl~~g~v~~~~Gs~l~ 187 (213)
T d1wbha1 148 AIAGPF-SQVRFCPTGGIS-PANYRDYLALKSVLCIGGSWLV 187 (213)
T ss_dssp HHHTTC-TTCEEEEBSSCC-TTTHHHHHTSTTBSCEEEGGGS
T ss_pred HhcCcc-cCCceeeeCCCC-HHHHHHHHhCCCEEEEEChhhC
Confidence 444444 379999999996 6799999999999999998664
|
| >d1vhca_ c.1.10.1 (A:) Hypothetical protein HI0047 {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Aldolase family: Class I aldolase domain: Hypothetical protein HI0047 species: Haemophilus influenzae [TaxId: 727]
Probab=97.67 E-value=0.00022 Score=61.93 Aligned_cols=167 Identities=14% Similarity=0.143 Sum_probs=103.6
Q ss_pred EEEeeecCCHHHHHHHHHHHHHcCCCEEEEecCCCCCcchhHHHhhhcCCCCccccccccccccCCCccccchhhHHHhh
Q 017781 126 FFQLYVYKDRNVVAQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLTLKNFQGLDLGKMDEANDSGLAAYVA 205 (366)
Q Consensus 126 ~~Qly~~~d~~~~~~~l~ra~~~G~~ai~vtvd~p~~g~r~~d~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 205 (366)
.+-+....+.+...++++.+.+.|.+.+-||++.|..-.-.+.++..+ |. +.+. .+........+........++.
T Consensus 16 iipvlr~~~~~~~~~~~~al~~~Gi~~iEitl~~~~a~~~I~~l~~~~--p~-~~vG-aGTV~~~~~~~~a~~aGa~Fiv 91 (212)
T d1vhca_ 16 IVPVIALDNADDILPLADTLAKNGLSVAEITFRSEAAADAIRLLRANR--PD-FLIA-AGTVLTAEQVVLAKSSGADFVV 91 (212)
T ss_dssp EEEEECCSSGGGHHHHHHHHHHTTCCEEEEETTSTTHHHHHHHHHHHC--TT-CEEE-EESCCSHHHHHHHHHHTCSEEE
T ss_pred EEEEEeCCCHHHHHHHHHHHHHCCCCEEEEeCCChhHHHHHHHHHhcC--CC-ceEe-eeecccHHHHHHHHhhCCcEEE
Confidence 344445667777888888888999999999999886544344444443 21 1110 0000000000000000011111
Q ss_pred hccCCCCCHHHHHHHHHhcCCCEEEEeccCHHH----HHcCCcEEEEcCCCccCCCCCcchHHHHHHHHHHcCCCceEEE
Q 017781 206 GQIDRSLSWKDVKWLQTITKLPILVKGVLTAED----VQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFL 281 (366)
Q Consensus 206 ~~~d~~~~~~~i~~lr~~~~~pv~vK~v~~~~d----~~aGad~I~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~i~vi~ 281 (366)
.|.++-+.++..++. ++| ++=|+.|+.+ .++|+|.+.+.-.+. .+|+ ..++.+..-++ +++++.
T Consensus 92 ---SP~~~~~v~~~a~~~-~i~-~iPGv~TpsEi~~A~~~G~~~vK~FPA~~---~gG~---~~lkal~~p~p-~~~~~p 159 (212)
T d1vhca_ 92 ---TPGLNPKIVKLCQDL-NFP-ITPGVNNPMAIEIALEMGISAVKFFPAEA---SGGV---KMIKALLGPYA-QLQIMP 159 (212)
T ss_dssp ---CSSCCHHHHHHHHHT-TCC-EECEECSHHHHHHHHHTTCCEEEETTTTT---TTHH---HHHHHHHTTTT-TCEEEE
T ss_pred ---CCCCCHHHHHHHHhc-CCC-ccCCcCCHHHHHHHHHCCCCEEEEccccc---cchH---HHHHHHhcccc-CCeEEe
Confidence 355666777777764 777 4457888887 899999999875321 1233 33444444343 799999
Q ss_pred ecCCCCHHHHHHHHHhCcCEEEecHHHH
Q 017781 282 DGGVRRGTDVFKALALGASGIFIGRPVV 309 (366)
Q Consensus 282 ~GGI~~~~dv~kalalGAd~V~igr~~l 309 (366)
+|||. .+++.+.|++|+.++++|+.+.
T Consensus 160 tGGV~-~~N~~~yl~~g~v~~~~Gs~l~ 186 (212)
T d1vhca_ 160 TGGIG-LHNIRDYLAIPNIVACGGSWFV 186 (212)
T ss_dssp BSSCC-TTTHHHHHTSTTBCCEEECGGG
T ss_pred cCCCC-HHHHHHHHhCCCEEEEEChhhC
Confidence 99995 6899999999999999998775
|
| >d1vcva1 c.1.10.1 (A:1-226) Deoxyribose-phosphate aldolase DeoC {Archaeon Pyrobaculum aerophilum [TaxId: 13773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Aldolase family: Class I aldolase domain: Deoxyribose-phosphate aldolase DeoC species: Archaeon Pyrobaculum aerophilum [TaxId: 13773]
Probab=97.65 E-value=0.00077 Score=58.91 Aligned_cols=91 Identities=20% Similarity=0.183 Sum_probs=62.6
Q ss_pred HHHHHHHHhcCCCEEEEecc-----CHHH--------HHcCCcEEEEcCCCc-c--------CCCCCcchHHHHHHHHHH
Q 017781 215 KDVKWLQTITKLPILVKGVL-----TAED--------VQAGAAGIIVSNHGA-R--------QLDYVPATIMALEEVVKA 272 (366)
Q Consensus 215 ~~i~~lr~~~~~pv~vK~v~-----~~~d--------~~aGad~I~vs~~gg-~--------~~~~~~~~~~~l~~i~~~ 272 (366)
++++.+++..+ +.++|.+. +.++ .++|+|+|.-|..-+ . .....+.....+.++.+.
T Consensus 102 ~ei~~v~~~~~-~~~lKVIlEt~~L~~~ei~~~~~~~~~aGadFIKTSTGf~~~g~~~~~~~~~~at~~~~~~~~~~~~~ 180 (226)
T d1vcva1 102 RDLISVVGAAG-GRVVKVITEEPYLRDEERYTLYDIIAEAGAHFIKSSTGFAEEAYAARQGNPVHSTPERAAAIARYIKE 180 (226)
T ss_dssp HHHHHHHHHTT-TSEEEEECCGGGCCHHHHHHHHHHHHHHTCSEEECCCSCCCHHHHHHTTCCSSCCHHHHHHHHHHHHH
T ss_pred HHHHHHHhccC-CCeEEEEecccccCHHHHHHHHHHHHHcCcceeeecccccCCcccccccCcccCcHHHHHHHHHHHHH
Confidence 34677777664 55789763 4443 889999999876321 0 111223345566666666
Q ss_pred cCCCceEEEecCCCCHHHHHHHHHh-------CcCEEEecH
Q 017781 273 TQGRIPVFLDGGVRRGTDVFKALAL-------GASGIFIGR 306 (366)
Q Consensus 273 ~~~~i~vi~~GGI~~~~dv~kalal-------GAd~V~igr 306 (366)
.++++.|=++||||+.+++.+.+.+ ||.-++..+
T Consensus 181 ~g~~vgiKasGGIrt~~~A~~~i~a~~~~~~~ga~RiGtSs 221 (226)
T d1vcva1 181 KGYRLGVKMAGGIRTREQAKAIVDAIGWGEDPARVRLGTST 221 (226)
T ss_dssp HTCCCEEEEESSCCSHHHHHHHHHHHCSCSCTTTEEEEESC
T ss_pred hCCceeEECcCCCCCHHHHHHHHHhhhcCCCCCCEEEecCC
Confidence 6678999999999999999999987 777665543
|
| >d1i4na_ c.1.2.4 (A:) Indole-3-glycerophosphate synthase, IPGS {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Ribulose-phoshate binding barrel family: Tryptophan biosynthesis enzymes domain: Indole-3-glycerophosphate synthase, IPGS species: Thermotoga maritima [TaxId: 2336]
Probab=97.55 E-value=0.00011 Score=65.28 Aligned_cols=98 Identities=18% Similarity=0.241 Sum_probs=65.1
Q ss_pred CHHHHHHHHHhcCCCEEEEec-cCHHH----HHcCCcEEEEcCCC--cc-------------------------------
Q 017781 213 SWKDVKWLQTITKLPILVKGV-LTAED----VQAGAAGIIVSNHG--AR------------------------------- 254 (366)
Q Consensus 213 ~~~~i~~lr~~~~~pv~vK~v-~~~~d----~~aGad~I~vs~~g--g~------------------------------- 254 (366)
++++++.+|+.+++||+-|.. .++-. ..+|||+|.+--.- ..
T Consensus 89 s~~~l~~vr~~~~~PiLrKDFIid~~QI~ea~~~GADaiLLI~~~L~~~~l~~l~~~a~~lgle~LvEvh~~~El~~al~ 168 (251)
T d1i4na_ 89 DPAFVRAARNLTCRPILAKDFYIDTVQVKLASSVGADAILIIARILTAEQIKEIYEAAEELGMDSLVEVHSREDLEKVFS 168 (251)
T ss_dssp CTHHHHHHHTTCCSCEEEECCCCSTHHHHHHHHTTCSEEEEEGGGSCHHHHHHHHHHHHTTTCEEEEEECSHHHHHHHHT
T ss_pred CHHHHHHHhhcccCchhhhhhhhCHHHHHHHHhhccceEEeecccccHHHHHHHHHHHHHhCCeeecccCCHHHHHHHhc
Confidence 467788888888999999953 33322 66677776653210 00
Q ss_pred ------------CCCCCcchHHHHHHHHHHcCCCceEEEecCCCCHHHHHHHHHhCcCEEEecHHHHHH
Q 017781 255 ------------QLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFIGRPVVYS 311 (366)
Q Consensus 255 ------------~~~~~~~~~~~l~~i~~~~~~~i~vi~~GGI~~~~dv~kalalGAd~V~igr~~l~~ 311 (366)
.+..-........++...++.+..+|+.+||++++|+. .+..|+|+|.||+.+|.+
T Consensus 169 ~~~a~iiGINnRdL~t~~vd~~~~~~L~~~ip~~~~~IaESGI~~~~d~~-~l~~G~davLIG~sLm~~ 236 (251)
T d1i4na_ 169 VIRPKIIGINTRDLDTFEIKKNVLWELLPLVPDDTVVVAESGIKDPRELK-DLRGKVNAVLVGTSIMKA 236 (251)
T ss_dssp TCCCSEEEEECBCTTTCCBCTTHHHHHGGGSCTTSEEEEESCCCCGGGHH-HHTTTCSEEEECHHHHHC
T ss_pred ccccceeeeeecchhccchhhhHHHHHHhhCCCCCEEEEcCCCCCHHHHH-HHHhCCCEEEEChHHhCC
Confidence 00010112233344555667788999999999999985 567899999999999874
|
| >d1thfd_ c.1.2.1 (D:) Cyclase subunit (or domain) of imidazoleglycerolphosphate synthase HisF {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Ribulose-phoshate binding barrel family: Histidine biosynthesis enzymes domain: Cyclase subunit (or domain) of imidazoleglycerolphosphate synthase HisF species: Thermotoga maritima [TaxId: 2336]
Probab=97.54 E-value=0.00014 Score=64.82 Aligned_cols=48 Identities=17% Similarity=0.284 Sum_probs=41.2
Q ss_pred hHHHHHHHHHHcCCCceEEEecCCCCHHHHHHHHHhCcCEEEecHHHHHH
Q 017781 262 TIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFIGRPVVYS 311 (366)
Q Consensus 262 ~~~~l~~i~~~~~~~i~vi~~GGI~~~~dv~kalalGAd~V~igr~~l~~ 311 (366)
.++.+.++.+.. ++|++++||+++.+|+.+++..|+++|.+|++|.++
T Consensus 183 d~~ll~~i~~~~--~~pvi~~GGv~s~~di~~l~~~g~~gvivgsal~~~ 230 (253)
T d1thfd_ 183 DTEMIRFVRPLT--TLPIIASGGAGKMEHFLEAFLAGADAALAASVFHFR 230 (253)
T ss_dssp CHHHHHHHGGGC--CSCEEEESCCCSHHHHHHHHHTTCSEEEESHHHHTT
T ss_pred cccccccccccc--cceEEEecCCCCHHHHHHHHHCCCCEEEEchHHHcC
Confidence 556676665554 799999999999999999999999999999998764
|
| >d1xi3a_ c.1.3.1 (A:) Thiamin phosphate synthase {Archaeon (Pyrococcus furiosus) [TaxId: 2261]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Thiamin phosphate synthase family: Thiamin phosphate synthase domain: Thiamin phosphate synthase species: Archaeon (Pyrococcus furiosus) [TaxId: 2261]
Probab=97.51 E-value=0.00051 Score=59.10 Aligned_cols=80 Identities=23% Similarity=0.282 Sum_probs=61.0
Q ss_pred EEEEeccCHHH----HHcCCcEEEEcCCCcc--CCCCCcchHHHHHHHHHHcCCCceEEEecCCCCHHHHHHHHHhCcCE
Q 017781 228 ILVKGVLTAED----VQAGAAGIIVSNHGAR--QLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASG 301 (366)
Q Consensus 228 v~vK~v~~~~d----~~aGad~I~vs~~gg~--~~~~~~~~~~~l~~i~~~~~~~i~vi~~GGI~~~~dv~kalalGAd~ 301 (366)
++.-.+.+.++ .+.|+|++.++--.-+ ..+..+..++.+.++.+.. ++||++-||| +.+++.+++.+||++
T Consensus 101 iig~s~h~~~e~~~a~~~g~DYi~~gpvf~T~tk~~~~~~g~~~l~~~~~~~--~~Pv~AiGGI-~~~ni~~~~~~Ga~g 177 (206)
T d1xi3a_ 101 IIGASVYSLEEALEAEKKGADYLGAGSVFPTKTKEDARVIGLEGLRKIVESV--KIPVVAIGGI-NKDNAREVLKTGVDG 177 (206)
T ss_dssp EEEEEESSHHHHHHHHHHTCSEEEEECSSCC----CCCCCHHHHHHHHHHHC--SSCEEEESSC-CTTTHHHHHTTTCSE
T ss_pred ccccccCCHHHHHHHHhcCCCEEEeccccccccccccccccHHHHHHHHHhc--CCCEEEECCC-CHHHHHHHHHhCCCE
Confidence 44434456666 7789999998763321 1223455788898888877 8999999999 778999999999999
Q ss_pred EEecHHHHH
Q 017781 302 IFIGRPVVY 310 (366)
Q Consensus 302 V~igr~~l~ 310 (366)
|.+.+.++.
T Consensus 178 vAvis~I~~ 186 (206)
T d1xi3a_ 178 IAVISAVMG 186 (206)
T ss_dssp EEESHHHHT
T ss_pred EEEhHHHHC
Confidence 999998864
|
| >d1piia2 c.1.2.4 (A:1-254) Indole-3-glycerophosphate synthase, IPGS {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Ribulose-phoshate binding barrel family: Tryptophan biosynthesis enzymes domain: Indole-3-glycerophosphate synthase, IPGS species: Escherichia coli [TaxId: 562]
Probab=97.45 E-value=0.00036 Score=62.00 Aligned_cols=98 Identities=17% Similarity=0.207 Sum_probs=64.7
Q ss_pred CHHHHHHHHHhcCCCEEEEec-cCHHH----HHcCCcEEEEcCCC-cc--------------------------------
Q 017781 213 SWKDVKWLQTITKLPILVKGV-LTAED----VQAGAAGIIVSNHG-AR-------------------------------- 254 (366)
Q Consensus 213 ~~~~i~~lr~~~~~pv~vK~v-~~~~d----~~aGad~I~vs~~g-g~-------------------------------- 254 (366)
+.++++.+|+.+++||+-|.. .++-. ..+|||+|.+--.- ..
T Consensus 96 s~~~l~~v~~~~~~PiLrKDFIid~~QI~ear~~GADavLLI~~~L~~~~l~~l~~~a~~lgl~~LVEvh~~~El~~a~~ 175 (254)
T d1piia2 96 SFNFLPIVSQIAPQPILCKDFIIDPYQIYLARYYQADACLLMLSVLDDDQYRQLAAVAHSLEMGVLTEVSNEEEQERAIA 175 (254)
T ss_dssp CTTHHHHHHHHCCSCEEEESCCCSHHHHHHHHHTTCSEEEEETTTCCHHHHHHHHHHHHHTTCEEEEEECSHHHHHHHHH
T ss_pred CHHHHHHHHhccccccchhcccCcHHHHHHHHhhccchhhhhHhhhcccHHHHHHHHHHHHhhhHHHhhccHHHHHHHHh
Confidence 345677788888888888843 34332 66677776653211 10
Q ss_pred -----------CCCCCcchHHHHHHHHHHcCCCceEEEecCCCCHHHHHHHHHhCcCEEEecHHHHHH
Q 017781 255 -----------QLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFIGRPVVYS 311 (366)
Q Consensus 255 -----------~~~~~~~~~~~l~~i~~~~~~~i~vi~~GGI~~~~dv~kalalGAd~V~igr~~l~~ 311 (366)
.+..-...++.-.++...++.+..+++.+||++.+|+.. +..|+|+|.||..+|.+
T Consensus 176 ~~a~iIGINnRnL~tf~vd~~~t~~L~~~ip~~~~~VsESGI~~~~d~~~-l~~g~davLiGeslm~~ 242 (254)
T d1piia2 176 LGAKVVGINNRDLRDLSIDLNRTRELAPKLGHNVTVISESGINTYAQVRE-LSHFANGFLIGSALMAH 242 (254)
T ss_dssp TTCSEEEEESEETTTTEECTHHHHHHHHHHCTTSEEEEESCCCCHHHHHH-HTTTCSEEEECHHHHTC
T ss_pred hcccccCccccchhhhhhhhHHHHHHHHhCCCCCEEEEcCCCCCHHHHHH-HHcCCCEEEEChHHhCC
Confidence 011111223344455566677888999999999999865 68899999999999864
|
| >d1ujpa_ c.1.2.4 (A:) Trp synthase alpha-subunit {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Ribulose-phoshate binding barrel family: Tryptophan biosynthesis enzymes domain: Trp synthase alpha-subunit species: Thermus thermophilus [TaxId: 274]
Probab=97.45 E-value=0.00046 Score=62.01 Aligned_cols=46 Identities=24% Similarity=0.330 Sum_probs=36.7
Q ss_pred HHHHHHHHHcCCCceEEEecCCCCHHHHHHHHHhCcCEEEecHHHHHHhh
Q 017781 264 MALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFIGRPVVYSLA 313 (366)
Q Consensus 264 ~~l~~i~~~~~~~i~vi~~GGI~~~~dv~kalalGAd~V~igr~~l~~l~ 313 (366)
+.+.++++.. ++||++-=||++++|+.++ .|||+|.||++|+..+.
T Consensus 192 ~~i~~ik~~t--~~Pv~vGFGIs~~e~v~~~--~~ADGvIVGSAiV~~i~ 237 (271)
T d1ujpa_ 192 DLVRRIKART--ALPVAVGFGVSGKATAAQA--AVADGVVVGSALVRALE 237 (271)
T ss_dssp HHHHHHHTTC--CSCEEEESCCCSHHHHHHH--TTSSEEEECHHHHHHHH
T ss_pred HHHHhhhccc--cCCeEEeCCCCCHHHHHHh--CCCCEEEEcHHHHHHHH
Confidence 4566665544 7999987799999998754 59999999999988654
|
| >d1vzwa1 c.1.2.1 (A:2-240) Phosphoribosylformimino-5-aminoimidazole carboxamide ribotite isomerase HisA {Streptomyces coelicolor [TaxId: 1902]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Ribulose-phoshate binding barrel family: Histidine biosynthesis enzymes domain: Phosphoribosylformimino-5-aminoimidazole carboxamide ribotite isomerase HisA species: Streptomyces coelicolor [TaxId: 1902]
Probab=97.30 E-value=0.0008 Score=59.13 Aligned_cols=48 Identities=29% Similarity=0.445 Sum_probs=40.3
Q ss_pred hHHHHHHHHHHcCCCceEEEecCCCCHHHHHHHHHh---CcCEEEecHHHHHH
Q 017781 262 TIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALAL---GASGIFIGRPVVYS 311 (366)
Q Consensus 262 ~~~~l~~i~~~~~~~i~vi~~GGI~~~~dv~kalal---GAd~V~igr~~l~~ 311 (366)
.++.+..+.+.. ++|++++|||++.+|+.+.-.+ |+++|.+|++|+++
T Consensus 177 d~~l~~~i~~~~--~~pvi~sGGv~s~~Di~~l~~l~~~g~~gvivg~al~~g 227 (239)
T d1vzwa1 177 NLELLKNVCAAT--DRPVVASGGVSSLDDLRAIAGLVPAGVEGAIVGKALYAK 227 (239)
T ss_dssp CHHHHHHHHHTC--SSCEEEESCCCSHHHHHHHHTTGGGTEEEEEECHHHHTT
T ss_pred cchhhhhhhhcc--CceEEEECCCCCHHHHHHHHhhhhCCccEeeEhHHHHCC
Confidence 566777777665 7999999999999999887554 99999999998764
|
| >d2flia1 c.1.2.2 (A:3-219) D-ribulose-5-phosphate 3-epimerase {Streptococcus pyogenes [TaxId: 1314]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Ribulose-phoshate binding barrel family: D-ribulose-5-phosphate 3-epimerase domain: D-ribulose-5-phosphate 3-epimerase species: Streptococcus pyogenes [TaxId: 1314]
Probab=97.27 E-value=0.0052 Score=53.09 Aligned_cols=49 Identities=20% Similarity=0.275 Sum_probs=37.0
Q ss_pred cchHHHHHHHHHHc---CCCceEEEecCCCCHHHHHHHHHhCcCEEEecHHHH
Q 017781 260 PATIMALEEVVKAT---QGRIPVFLDGGVRRGTDVFKALALGASGIFIGRPVV 309 (366)
Q Consensus 260 ~~~~~~l~~i~~~~---~~~i~vi~~GGI~~~~dv~kalalGAd~V~igr~~l 309 (366)
+..++-+.++++.. ..+++|.+||||+ .+.+.+...+|||.+.+|+.++
T Consensus 149 ~~~~~ki~~l~~~~~~~~~~~~I~vDGGIn-~~~i~~l~~aGad~~V~Gsaif 200 (217)
T d2flia1 149 PECLEKVATVAKWRDEKGLSFDIEVDGGVD-NKTIRACYEAGANVFVAGSYLF 200 (217)
T ss_dssp GGGHHHHHHHHHHHHHTTCCCEEEEESSCC-TTTHHHHHHHTCCEEEESHHHH
T ss_pred hhhHHHHHHHHHHHHhcCCCeEEEEeCCCC-HHHHHHHHHCCCCEEEEchHHh
Confidence 44566666666544 2368999999996 5568888889999999998654
|
| >d1p1xa_ c.1.10.1 (A:) Deoxyribose-phosphate aldolase DeoC {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Aldolase family: Class I aldolase domain: Deoxyribose-phosphate aldolase DeoC species: Escherichia coli [TaxId: 562]
Probab=97.26 E-value=0.00046 Score=61.27 Aligned_cols=89 Identities=24% Similarity=0.271 Sum_probs=58.2
Q ss_pred HHHHHHHHHhc-CCCEEEEecc-----CHHH---------HHcCCcEEEEcCCCccCCCCCcchHHHHHHHHHH--cCCC
Q 017781 214 WKDVKWLQTIT-KLPILVKGVL-----TAED---------VQAGAAGIIVSNHGARQLDYVPATIMALEEVVKA--TQGR 276 (366)
Q Consensus 214 ~~~i~~lr~~~-~~pv~vK~v~-----~~~d---------~~aGad~I~vs~~gg~~~~~~~~~~~~l~~i~~~--~~~~ 276 (366)
.++++.+++.. ..++.+|.+. +.++ .++|+|+|..|...+. ....+.....+.++.+. .+.+
T Consensus 119 ~~ei~~v~~~~~~~~~~lKVIlEt~~Ltd~e~i~~a~~ia~~aGadFvKTSTG~~~-~gat~~~v~~m~~~i~~~~~~~~ 197 (250)
T d1p1xa_ 119 FDLVKACKEACAAANVLLKVIIETGELKDEALIRKASEISIKAGADFIKTSTGKVA-VNATPESARIMMEVIRDMGVEKT 197 (250)
T ss_dssp HHHHHHHHHHHHHTTCEEEEECCHHHHCSHHHHHHHHHHHHHTTCSEEECCCSCSS-CCCCHHHHHHHHHHHHHHTCTTT
T ss_pred HHHHHHHHHhhccCCceEEEEEeccccCcHHHHHHHHHHHHHcCcCeEEecCCcCC-CCCCHHHHHHHHHHhhhhccCcc
Confidence 34566676654 3467889773 2222 8999999998763221 11123333444443322 2347
Q ss_pred ceEEEecCCCCHHHHHHHHHhCcCEEE
Q 017781 277 IPVFLDGGVRRGTDVFKALALGASGIF 303 (366)
Q Consensus 277 i~vi~~GGI~~~~dv~kalalGAd~V~ 303 (366)
+.|=++||||+.+|+.+.+.+||+.++
T Consensus 198 vgIKasGGIrt~~~a~~~i~~ga~~iG 224 (250)
T d1p1xa_ 198 VGFKPAGGVRTAEDAQKYLAIADELFG 224 (250)
T ss_dssp CEEECBSSCCSHHHHHHHHHHHHHHHC
T ss_pred eeeEecCCCCCHHHHHHHHHHHHHHhC
Confidence 999999999999999999999998654
|
| >d1ka9f_ c.1.2.1 (F:) Cyclase subunit (or domain) of imidazoleglycerolphosphate synthase HisF {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Ribulose-phoshate binding barrel family: Histidine biosynthesis enzymes domain: Cyclase subunit (or domain) of imidazoleglycerolphosphate synthase HisF species: Thermus thermophilus [TaxId: 274]
Probab=97.20 E-value=0.0006 Score=60.48 Aligned_cols=68 Identities=21% Similarity=0.319 Sum_probs=54.8
Q ss_pred HHcCCcEEEEcCC--CccCCCCCcchHHHHHHHHHHcCCCceEEEecCCCCHHHHHHHHHhCcCEEEecHHHHHH
Q 017781 239 VQAGAAGIIVSNH--GARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFIGRPVVYS 311 (366)
Q Consensus 239 ~~aGad~I~vs~~--gg~~~~~~~~~~~~l~~i~~~~~~~i~vi~~GGI~~~~dv~kalalGAd~V~igr~~l~~ 311 (366)
.+.|+..|.+..- -|+ ..| +.++.+.++.+.. ++|+|++||+++.+|+.+++..|+++|.+|++|.++
T Consensus 161 ~~~g~~eii~tdi~~dG~--~~G-~d~~l~~~i~~~~--~~pii~~GGv~~~~dl~~l~~~g~~gviig~al~~g 230 (251)
T d1ka9f_ 161 VELGAGEILLTSMDRDGT--KEG-YDLRLTRMVAEAV--GVPVIASGGAGRMEHFLEAFQAGAEAALAASVFHFG 230 (251)
T ss_dssp HHHTCCEEEEEETTTTTT--CSC-CCHHHHHHHHHHC--SSCEEEESCCCSHHHHHHHHHTTCSEEEESHHHHTT
T ss_pred HhcCCCEEEEEeecccCc--cCC-cchhHHHHHHhhc--ceeEEEecCCCCHHHHHHHHHCCCCEEEEhHHHHcC
Confidence 6778888887542 221 123 3578888888877 799999999999999999999999999999998764
|
| >d1znna1 c.1.2.6 (A:18-271) Pyridoxal biosynthesis lyase PdxS {Bacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Ribulose-phoshate binding barrel family: PdxS-like domain: Pyridoxal biosynthesis lyase PdxS species: Bacillus stearothermophilus [TaxId: 1422]
Probab=97.20 E-value=0.00019 Score=62.52 Aligned_cols=48 Identities=27% Similarity=0.472 Sum_probs=39.8
Q ss_pred HHHHHHHHHHcCCCceEEEecCCCCHHHHHHHHHhCcCEEEecHHHHH
Q 017781 263 IMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFIGRPVVY 310 (366)
Q Consensus 263 ~~~l~~i~~~~~~~i~vi~~GGI~~~~dv~kalalGAd~V~igr~~l~ 310 (366)
.+.+.++.+.-+-.+|+|++|||.|+.|+..++.||+|+|.+|+.+..
T Consensus 176 ~~l~~~v~~~g~l~v~~~~~~Gi~tpadaa~~MelG~dgV~v~s~I~~ 223 (254)
T d1znna1 176 VEVLREIKRLGRLPVVNFAAGGVTTPADAALMMHLGADGVFVGSGIFK 223 (254)
T ss_dssp HHHHHHHHHHTSCSSEEEEESSCCSHHHHHHHHHTTCSEEEECGGGGG
T ss_pred hHHHHHHHHhCCCCceEEecCCCCChhhHHHHHHcCCCEEEEcchhhc
Confidence 455666665433379999999999999999999999999999998754
|
| >d1q6oa_ c.1.2.3 (A:) 3-keto-L-gulonate 6-phosphate decarboxylase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Ribulose-phoshate binding barrel family: Decarboxylase domain: 3-keto-L-gulonate 6-phosphate decarboxylase species: Escherichia coli [TaxId: 562]
Probab=97.15 E-value=0.0026 Score=53.65 Aligned_cols=88 Identities=11% Similarity=0.097 Sum_probs=53.0
Q ss_pred HHcCCcEEEEcCCCccCCCCCcchHHHHHHHHHHcCCCceEEEecCCCCHHHHHHHHHhCcCEEEecHHHHHHhhhcCHH
Q 017781 239 VQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFIGRPVVYSLAAEGEK 318 (366)
Q Consensus 239 ~~aGad~I~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~i~vi~~GGI~~~~dv~kalalGAd~V~igr~~l~~l~~~G~~ 318 (366)
.+.|++.+++....-.+..+.......+..+++..+..+++..+||++ .+++-+++.+|||.+.+||++..+ .-+
T Consensus 124 ~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~i~~~~~~~~~i~~~gGi~-~~~~~~~~~~Gad~iVVGr~I~~a---~dp- 198 (213)
T d1q6oa_ 124 RDAGIGQVVYHRSRDAQAAGVAWGEADITAIKRLSDMGFKVTVTGGLA-LEDLPLFKGIPIHVFIAGRSIRDA---ASP- 198 (213)
T ss_dssp HHTTCCEEEEECCHHHHHTTCCCCHHHHHHHHHHHHTTCEEEEESSCC-GGGGGGGTTSCCSEEEESHHHHTS---SCH-
T ss_pred HHhHHHHHHHHHhcccCcCCeeCCHHHHHHHHHhhccCceEecCCCcC-cCCHHHHHHcCCCEEEEChhhcCC---CCH-
Confidence 667787776543110001111122234444444434478999999885 789999999999999999998643 122
Q ss_pred HHHHHHHHHHHHHHH
Q 017781 319 GVRRVLEMLREEFEL 333 (366)
Q Consensus 319 gv~~~~~~l~~el~~ 333 (366)
.+.++.++++++.
T Consensus 199 --~~a~~~~~~~i~~ 211 (213)
T d1q6oa_ 199 --VEAARQFKRSIAE 211 (213)
T ss_dssp --HHHHHHHHHHHHH
T ss_pred --HHHHHHHHHHHHH
Confidence 2344555555543
|
| >d2tpsa_ c.1.3.1 (A:) Thiamin phosphate synthase {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Thiamin phosphate synthase family: Thiamin phosphate synthase domain: Thiamin phosphate synthase species: Bacillus subtilis [TaxId: 1423]
Probab=97.12 E-value=0.0014 Score=57.08 Aligned_cols=108 Identities=19% Similarity=0.163 Sum_probs=68.3
Q ss_pred HHHHHhcCCCEEEEeccCHHH----HHcCCcEEEEcCCCccC--CCCC-cchHHHHHHHHHHcCCCceEEEecCCCCHHH
Q 017781 218 KWLQTITKLPILVKGVLTAED----VQAGAAGIIVSNHGARQ--LDYV-PATIMALEEVVKATQGRIPVFLDGGVRRGTD 290 (366)
Q Consensus 218 ~~lr~~~~~pv~vK~v~~~~d----~~aGad~I~vs~~gg~~--~~~~-~~~~~~l~~i~~~~~~~i~vi~~GGI~~~~d 290 (366)
..+|+..+..++.--+-+.++ .+.|+|+|.++.-..+. .+.. +...+.+..+.+.. -++||++-||| +.++
T Consensus 107 ~~~r~~~~~~iig~S~h~~~e~~~a~~~g~DYi~~gpvf~T~sK~~~~~~~~~~~~~~~~~~~-~~~Pv~AiGGI-~~~n 184 (226)
T d2tpsa_ 107 KEVRAAIGDMILGVSAHTMSEVKQAEEDGADYVGLGPIYPTETKKDTRAVQGVSLIEAVRRQG-ISIPIVGIGGI-TIDN 184 (226)
T ss_dssp HHHHHHHTTSEEEEEECSHHHHHHHHHHTCSEEEECCSSCCCSSSSCCCCCTTHHHHHHHHTT-CCCCEEEESSC-CTTT
T ss_pred hhhhhcccceeeeeeccchHHHHHHHhCcCCeEEEecccccccccccccccccchhHHHHHhc-CCCCEEEecCC-CHHH
Confidence 334444443344444556666 78899999988643221 1222 23345565554421 27999999999 8899
Q ss_pred HHHHHHhCcCEEEecHHHHHHhhhcCHHHHHHHHHHHHHHHHH
Q 017781 291 VFKALALGASGIFIGRPVVYSLAAEGEKGVRRVLEMLREEFEL 333 (366)
Q Consensus 291 v~kalalGAd~V~igr~~l~~l~~~G~~gv~~~~~~l~~el~~ 333 (366)
+.+++.+||++|.+.+.++.+ ..+ ...++.+++.++.
T Consensus 185 i~~l~~~Ga~giAvis~I~~a---~dp---~~~~~~~~~~~~~ 221 (226)
T d2tpsa_ 185 AAPVIQAGADGVSMISAISQA---EDP---ESAARKFREEIQT 221 (226)
T ss_dssp SHHHHHTTCSEEEESHHHHTS---SCH---HHHHHHHHHHHHH
T ss_pred HHHHHHhCCCEEEEhHHhhcC---CCH---HHHHHHHHHHHHH
Confidence 999999999999999988642 222 3344455554443
|
| >d1hg3a_ c.1.1.1 (A:) Triosephosphate isomerase {Archaeon Pyrococcus woesei [TaxId: 2262]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Triosephosphate isomerase (TIM) family: Triosephosphate isomerase (TIM) domain: Triosephosphate isomerase species: Archaeon Pyrococcus woesei [TaxId: 2262]
Probab=97.10 E-value=0.0019 Score=56.01 Aligned_cols=94 Identities=22% Similarity=0.308 Sum_probs=57.6
Q ss_pred HHHHHHhcCCCEEEEeccCHHH---HHcCCcEEEEcCC---C-ccCCC-CCcchHHHHHHHHHHcCCCceEEEecCCCCH
Q 017781 217 VKWLQTITKLPILVKGVLTAED---VQAGAAGIIVSNH---G-ARQLD-YVPATIMALEEVVKATQGRIPVFLDGGVRRG 288 (366)
Q Consensus 217 i~~lr~~~~~pv~vK~v~~~~d---~~aGad~I~vs~~---g-g~~~~-~~~~~~~~l~~i~~~~~~~i~vi~~GGI~~~ 288 (366)
++..++ .++.+++......+. .+.+.+.|-.-.. | |.... .-+..+....+..+.+..++||+..|||.++
T Consensus 109 i~~~~~-~gl~~i~cv~~~~~~~~~~~~~~~iiAyEpvwaIGtg~~~~~~~~~~i~~~i~~i~~~~~~v~vlygGsV~~~ 187 (224)
T d1hg3a_ 109 IRRAEE-VGLMTMVCSNNPAVSAAVAALNPDYVAVEPPELIGTGIPVSKAKPEVITNTVELVKKVNPEVKVLCGAGISTG 187 (224)
T ss_dssp HHHHHH-HTCEEEEEESSHHHHHHHHTTCCSEEEECCTTTTTTSCCTTTSCTHHHHHHHHHHHHHCTTSEEEEESSCCSH
T ss_pred HHHHHH-cCCceeechhhHHHHHhhhhcccceEEecchHhhccccCCCchhhhhhhhhhhhhhhhccccceEEeCCcCCH
Confidence 444333 255555443333333 6777777765332 1 11111 1122232222333344568999999999999
Q ss_pred HHHHHHHHhCcCEEEecHHHHHH
Q 017781 289 TDVFKALALGASGIFIGRPVVYS 311 (366)
Q Consensus 289 ~dv~kalalGAd~V~igr~~l~~ 311 (366)
.|+.+++.+|+|+|.||++++.+
T Consensus 188 n~~~~~~~~g~dGvLVGsAsl~a 210 (224)
T d1hg3a_ 188 EDVKKAIELGTVGVLLASGVTKA 210 (224)
T ss_dssp HHHHHHHHTTCSEEEESHHHHTC
T ss_pred HHHHHHHhCCCCEEEEcceeecC
Confidence 99999999999999999999863
|
| >d1h5ya_ c.1.2.1 (A:) Cyclase subunit (or domain) of imidazoleglycerolphosphate synthase HisF {Archaeon Pyrobaculum aerophilum [TaxId: 13773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Ribulose-phoshate binding barrel family: Histidine biosynthesis enzymes domain: Cyclase subunit (or domain) of imidazoleglycerolphosphate synthase HisF species: Archaeon Pyrobaculum aerophilum [TaxId: 13773]
Probab=97.06 E-value=0.00082 Score=59.67 Aligned_cols=68 Identities=22% Similarity=0.396 Sum_probs=53.5
Q ss_pred HHcCCcEEEEcC--CCccCCCCCcchHHHHHHHHHHcCCCceEEEecCCCCHHHHHHHHHhCcCEEEecHHHHHH
Q 017781 239 VQAGAAGIIVSN--HGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFIGRPVVYS 311 (366)
Q Consensus 239 ~~aGad~I~vs~--~gg~~~~~~~~~~~~l~~i~~~~~~~i~vi~~GGI~~~~dv~kalalGAd~V~igr~~l~~ 311 (366)
.+.|+..|.+.. +-|+ ..| +.++.+.++.+.. ++|++++|||++.+|+.++..+|+++|.+|+.|.++
T Consensus 163 ~~~g~~eii~tdI~~dG~--~~G-~d~~~~~~i~~~~--~~pii~~GGv~~~~di~~l~~~g~~gv~~gs~l~~~ 232 (252)
T d1h5ya_ 163 EELGAGEILLTSIDRDGT--GLG-YDVELIRRVADSV--RIPVIASGGAGRVEHFYEAAAAGADAVLAASLFHFR 232 (252)
T ss_dssp HHHTCSEEEEEETTTTTT--CSC-CCHHHHHHHHHHC--SSCEEEESCCCSHHHHHHHHHTTCSEEEESHHHHTT
T ss_pred HhcCCCEEEEEeecccCc--cCC-cCHHHHHHHHHhc--CCCEEEecCCCCHHHHHHHHHCCCCEEEEhhHHHcC
Confidence 566777777653 2121 112 4678888888776 799999999999999999999999999999999764
|
| >d1w0ma_ c.1.1.1 (A:) Triosephosphate isomerase {Thermoproteus tenax [TaxId: 2271]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Triosephosphate isomerase (TIM) family: Triosephosphate isomerase (TIM) domain: Triosephosphate isomerase species: Thermoproteus tenax [TaxId: 2271]
Probab=96.91 E-value=0.0042 Score=53.96 Aligned_cols=86 Identities=21% Similarity=0.265 Sum_probs=55.4
Q ss_pred CCCEEEEeccCHHH----HHcCCcEEEEcCC--CccCCCCCcchHHHHHHHH---HHcCCCceEEEecCCCCHHHHHHHH
Q 017781 225 KLPILVKGVLTAED----VQAGAAGIIVSNH--GARQLDYVPATIMALEEVV---KATQGRIPVFLDGGVRRGTDVFKAL 295 (366)
Q Consensus 225 ~~pv~vK~v~~~~d----~~aGad~I~vs~~--gg~~~~~~~~~~~~l~~i~---~~~~~~i~vi~~GGI~~~~dv~kal 295 (366)
++.+++ .+.+.++ .+.+.+.|..-.. .|+.....+...+.+.... +....++||+..|||.++.|+..++
T Consensus 114 gl~~iv-cvge~~~~~~~~~~~~~iIayep~waIGtg~~~~~~~~~~i~~~i~~~~~~~~~i~vlygGgV~~~n~~~~~~ 192 (226)
T d1w0ma_ 114 GLDVVV-CAPDPRTSLAAAALGPHAVAVEPPELIGTGRAVSRYKPEAIVETVGLVSRHFPEVSVITGAGIESGDDVAAAL 192 (226)
T ss_dssp TCEEEE-EESSHHHHHHHHHTCCSEEEECCGGGTTTSCCHHHHCHHHHHHHHHHHHHHCTTSEEEEESSCCSHHHHHHHH
T ss_pred CCEEEE-ecCchHHhhhhhccccceeeecchhhccCCCCCChhhhhHhhhhhhhhhccCCCceEEEecCcCChHHHHHHh
Confidence 554444 3444443 8888888876542 1221111122222222222 2233589999999999999999999
Q ss_pred HhCcCEEEecHHHHHH
Q 017781 296 ALGASGIFIGRPVVYS 311 (366)
Q Consensus 296 alGAd~V~igr~~l~~ 311 (366)
.+|+|+|.||++++.+
T Consensus 193 ~~g~dGvLVGsA~l~a 208 (226)
T d1w0ma_ 193 RLGTRGVLLASAAVKA 208 (226)
T ss_dssp HTTCSEEEECHHHHTC
T ss_pred cCCCCEEEechheecC
Confidence 9999999999999864
|
| >d1jvna1 c.1.2.1 (A:230-552) Cyclase subunit (or domain) of imidazoleglycerolphosphate synthase HisF {Baker's yeast (Saccharomyces cerevisiae), His7 [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Ribulose-phoshate binding barrel family: Histidine biosynthesis enzymes domain: Cyclase subunit (or domain) of imidazoleglycerolphosphate synthase HisF species: Baker's yeast (Saccharomyces cerevisiae), His7 [TaxId: 4932]
Probab=96.76 E-value=0.0018 Score=59.42 Aligned_cols=68 Identities=18% Similarity=0.171 Sum_probs=54.2
Q ss_pred HHcCCcEEEEcC--CCccCCCCCcchHHHHHHHHHHcCCCceEEEecCCCCHHHHHHHHHh-CcCEEEecHHHHHH
Q 017781 239 VQAGAAGIIVSN--HGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALAL-GASGIFIGRPVVYS 311 (366)
Q Consensus 239 ~~aGad~I~vs~--~gg~~~~~~~~~~~~l~~i~~~~~~~i~vi~~GGI~~~~dv~kalal-GAd~V~igr~~l~~ 311 (366)
.+.|+--|.+.. +-|+ . .-+.++.+.++.+.+ ++|||++||+.+.+|+.+++.. |+++|.+|+.|.+.
T Consensus 230 ~~~G~GEIlltdIdrDGt--~-~G~D~el~~~i~~~~--~iPiIasGGi~s~~di~~ll~~~~v~gv~~gs~~~~~ 300 (323)
T d1jvna1 230 EALGAGEILLNCIDKDGS--N-SGYDLELIEHVKDAV--KIPVIASSGAGVPEHFEEAFLKTRADACLGAGMFHRG 300 (323)
T ss_dssp HHTTCCEEEECCGGGTTT--C-SCCCHHHHHHHHHHC--SSCEEECSCCCSHHHHHHHHHHSCCSEEEESHHHHTT
T ss_pred hccCcceeEEEeeccccc--c-cccchhHHHHHHHhC--CCCEEEECCCCCHHHHHHHHHhCCCeEEEEhhHHHcC
Confidence 567888888764 2221 1 224788999998888 7999999999999999999975 69999999999764
|
| >d1h1ya_ c.1.2.2 (A:) D-ribulose-5-phosphate 3-epimerase {Rice (Oryza sativa) [TaxId: 4530]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Ribulose-phoshate binding barrel family: D-ribulose-5-phosphate 3-epimerase domain: D-ribulose-5-phosphate 3-epimerase species: Rice (Oryza sativa) [TaxId: 4530]
Probab=96.76 E-value=0.038 Score=47.47 Aligned_cols=66 Identities=18% Similarity=0.290 Sum_probs=46.1
Q ss_pred CCcEEEEcCC--CccCCCCCcchHHHHHHHHHHcCCCceEEEecCCCCHHHHHHHHHhCcCEEEecHHHH
Q 017781 242 GAAGIIVSNH--GARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFIGRPVV 309 (366)
Q Consensus 242 Gad~I~vs~~--gg~~~~~~~~~~~~l~~i~~~~~~~i~vi~~GGI~~~~dv~kalalGAd~V~igr~~l 309 (366)
-+|.|.+-.- |......-+..++-+.++++.. .+++|.+||||..- -+.+...+|||.+.+|+.++
T Consensus 133 ~~d~vlim~v~PG~~GQ~f~~~~l~kI~~l~~~~-~~~~I~VDGGIn~~-~i~~l~~aGad~~V~GS~if 200 (220)
T d1h1ya_ 133 PVELVLVMTVEPGFGGQKFMPEMMEKVRALRKKY-PSLDIEVDGGLGPS-TIDVAASAGANCIVAGSSIF 200 (220)
T ss_dssp CCSEEEEESSCTTCSSCCCCGGGHHHHHHHHHHC-TTSEEEEESSCSTT-THHHHHHHTCCEEEESHHHH
T ss_pred ccceEEEEecCCCCcccccchhhhHHHHHHHhcC-CCceEEEEecCCHH-HHHHHHHCCCCEEEECHHHH
Confidence 4787775432 2111122355677777777654 47999999999764 67778889999999998753
|
| >d1mxsa_ c.1.10.1 (A:) KDPG aldolase {Pseudomonas putida [TaxId: 303]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Aldolase family: Class I aldolase domain: KDPG aldolase species: Pseudomonas putida [TaxId: 303]
Probab=96.72 E-value=0.0044 Score=53.50 Aligned_cols=114 Identities=18% Similarity=0.254 Sum_probs=82.7
Q ss_pred EEEeeecCCHHHHHHHHHHHHHcCCCEEEEecCCCCCcchhHHHhhhcCCCCccccccccccccCCCccccchhhHHHhh
Q 017781 126 FFQLYVYKDRNVVAQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLTLKNFQGLDLGKMDEANDSGLAAYVA 205 (366)
Q Consensus 126 ~~Qly~~~d~~~~~~~l~ra~~~G~~ai~vtvd~p~~g~r~~d~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 205 (366)
.+-+....+.+...++++.+.+.|++.+-||.+.|.
T Consensus 19 iipvl~~~~~~~a~~~~~al~~~Gi~~iEitl~~p~-------------------------------------------- 54 (216)
T d1mxsa_ 19 ILPVITIAREEDILPLADALAAGGIRTLEVTLRSQH-------------------------------------------- 54 (216)
T ss_dssp EEEEECCSCGGGHHHHHHHHHHTTCCEEEEESSSTH--------------------------------------------
T ss_pred EEEEEECCCHHHHHHHHHHHHHCCCCEEEEeCCChh--------------------------------------------
Confidence 344455678888888899999999999999876431
Q ss_pred hccCCCCCHHHHHHHHHhc-CCCEEEEeccCHHH----HHcCCcEEEEcCCCccCCCCCcchHHHHHHHHHHcCCCceEE
Q 017781 206 GQIDRSLSWKDVKWLQTIT-KLPILVKGVLTAED----VQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVF 280 (366)
Q Consensus 206 ~~~d~~~~~~~i~~lr~~~-~~pv~vK~v~~~~d----~~aGad~I~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~i~vi 280 (366)
.++.|+.++++. ++-|.+..|.+.++ .++|+++++--+ ...+++..+. .. .+|++
T Consensus 55 -------a~~~i~~l~~~~p~~~vGaGTV~~~~~~~~a~~aGa~FivsP~----------~~~~v~~~a~-~~--~i~~i 114 (216)
T d1mxsa_ 55 -------GLKAIQVLREQRPELCVGAGTVLDRSMFAAVEAAGAQFVVTPG----------ITEDILEAGV-DS--EIPLL 114 (216)
T ss_dssp -------HHHHHHHHHHHCTTSEEEEECCCSHHHHHHHHHHTCSSEECSS----------CCHHHHHHHH-HC--SSCEE
T ss_pred -------HHHHHHHHHHhCCCcceeeeeeecHHHHHHHHhCCCCEEECCC----------CcHHHHHHHH-hc--CCCcc
Confidence 245678888877 56677777889887 999999996211 1334443333 22 45555
Q ss_pred EecCCCCHHHHHHHHHhCcCEEEec
Q 017781 281 LDGGVRRGTDVFKALALGASGIFIG 305 (366)
Q Consensus 281 ~~GGI~~~~dv~kalalGAd~V~ig 305 (366)
=|+.|+.++.+|+.+||+.|=+=
T Consensus 115 --PGv~TpsEi~~A~~~G~~~vKlF 137 (216)
T d1mxsa_ 115 --PGISTPSEIMMGYALGYRRFKLF 137 (216)
T ss_dssp --CEECSHHHHHHHHTTTCCEEEET
T ss_pred --CCcCCHHHHHHHHHCCCCEEEec
Confidence 47999999999999999998764
|
| >d2a4aa1 c.1.10.1 (A:3-258) Fructose-1,6-bisphosphate aldolase {Plasmodium yoelii yoelii [TaxId: 73239]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Aldolase family: Class I aldolase domain: Fructose-1,6-bisphosphate aldolase species: Plasmodium yoelii yoelii [TaxId: 73239]
Probab=96.66 E-value=0.0047 Score=54.74 Aligned_cols=64 Identities=14% Similarity=0.190 Sum_probs=43.8
Q ss_pred HHcCCcEEEEcCCCccCCCCCcchHHHHHHHHH-H------cCCCceEEEecCCCCHHHHHHHHHhCcCEEE
Q 017781 239 VQAGAAGIIVSNHGARQLDYVPATIMALEEVVK-A------TQGRIPVFLDGGVRRGTDVFKALALGASGIF 303 (366)
Q Consensus 239 ~~aGad~I~vs~~gg~~~~~~~~~~~~l~~i~~-~------~~~~i~vi~~GGI~~~~dv~kalalGAd~V~ 303 (366)
.++|+|+|.-|...+. ....+.....+.++.+ . .++++.|=++||||+.+++.+.+.+||+.++
T Consensus 161 ~~aGadFVKTSTG~~~-~gat~~~v~~m~~~v~e~~~~~~~~g~~~gVKASGGIrt~~~a~~~i~~g~~~lG 231 (256)
T d2a4aa1 161 LNGNADFIKTSTGKVQ-INATPSSVEYIIKAIKEYIKNNPEKNNKIGLKVSGGISDLNTASHYILLARRFLS 231 (256)
T ss_dssp HTTTCSEEECCCSCSS-CCCCHHHHHHHHHHHHHHHHHCGGGTTCCEEEEESSCCSHHHHHHHHHHHHHHTC
T ss_pred HhcccHHHHhccCCCC-CCCCHHHHHHHHHHHHHHHhhccccCCceeEEecCCCCCHHHHHHHHHHHHHhcc
Confidence 6899999997763221 1122334444333322 1 1468999999999999999999999999753
|
| >d1qapa1 c.1.17.1 (A:130-296) Quinolinic acid phosphoribosyltransferase (Nicotinate-nucleotide pyrophosphorylase, NadC), C-terminal domain {Salmonella typhimurium [TaxId: 90371]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Nicotinate/Quinolinate PRTase C-terminal domain-like family: NadC C-terminal domain-like domain: Quinolinic acid phosphoribosyltransferase (Nicotinate-nucleotide pyrophosphorylase, NadC), C-terminal domain species: Salmonella typhimurium [TaxId: 90371]
Probab=96.62 E-value=0.009 Score=49.42 Aligned_cols=84 Identities=19% Similarity=0.178 Sum_probs=63.0
Q ss_pred HHHHHHHHhcCCCEEEEeccCHHH----HHcCCcEEEEcCCCccCCCCCcchHHHHHHHHHHcCCCceEEEecCCCCHHH
Q 017781 215 KDVKWLQTITKLPILVKGVLTAED----VQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTD 290 (366)
Q Consensus 215 ~~i~~lr~~~~~pv~vK~v~~~~d----~~aGad~I~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~i~vi~~GGI~~~~d 290 (366)
+.++.+|+......+.-.+.+.++ .++|+|.|.+.|. +.+.+.++.+.+..++.+-++||| +.+.
T Consensus 68 ~~~~~~~~~~~~~~IeVEv~~~~~~~~a~~~g~diImLDN~----------~pe~~~~av~~i~~~~~lEaSGgI-~~~n 136 (167)
T d1qapa1 68 QAVEKAFWLHPDVPVEVEVENLDELDDALKAGADIIMLDNF----------NTDQMREAVKRVNGQARLEVSGNV-TAET 136 (167)
T ss_dssp HHHHHHHHHSTTSCEEEEESSHHHHHHHHHTTCSEEEESSC----------CHHHHHHHHHTTCTTCCEEECCCS-CHHH
T ss_pred hhhHHHhhcCCCceEEEecCcHHHHHHHHhcCCcEEEecCC----------CHHHHHHHHHhcCCceEEEEeCCC-CHHH
Confidence 457777765533334446677766 8999999999884 234555666667678899999999 6888
Q ss_pred HHHHHHhCcCEEEecHHHH
Q 017781 291 VFKALALGASGIFIGRPVV 309 (366)
Q Consensus 291 v~kalalGAd~V~igr~~l 309 (366)
+.++...|+|.+.+|.+..
T Consensus 137 i~~ya~~GVD~IS~galt~ 155 (167)
T d1qapa1 137 LREFAETGVDFISVGALTK 155 (167)
T ss_dssp HHHHHHTTCSEEECSHHHH
T ss_pred HHHHHHcCCCEEECCcccC
Confidence 9999999999999998754
|
| >d1h5ya_ c.1.2.1 (A:) Cyclase subunit (or domain) of imidazoleglycerolphosphate synthase HisF {Archaeon Pyrobaculum aerophilum [TaxId: 13773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Ribulose-phoshate binding barrel family: Histidine biosynthesis enzymes domain: Cyclase subunit (or domain) of imidazoleglycerolphosphate synthase HisF species: Archaeon Pyrobaculum aerophilum [TaxId: 13773]
Probab=96.54 E-value=0.003 Score=55.89 Aligned_cols=69 Identities=26% Similarity=0.336 Sum_probs=54.1
Q ss_pred HHcCCcEEEEcCCCccCCCCCcchHHHHHHHHHHcCCCceEEEecCCCCHHHHHHHHHhCcCEEEecHHHHH
Q 017781 239 VQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFIGRPVVY 310 (366)
Q Consensus 239 ~~aGad~I~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~i~vi~~GGI~~~~dv~kalalGAd~V~igr~~l~ 310 (366)
.+.|+|.+.+-.-.+. .......+..+.++.+.+ .+|+.+.||||+-+|+.+.+.+||+-|.+|+..+.
T Consensus 42 ~~~gadei~ivDl~~~-~~~~~~~~~~i~~i~~~~--~~pi~~gGGIr~~e~~~~ll~~G~~kVii~s~~~~ 110 (252)
T d1h5ya_ 42 EEEGADEIAILDITAA-PEGRATFIDSVKRVAEAV--SIPVLVGGGVRSLEDATTLFRAGADKVSVNTAAVR 110 (252)
T ss_dssp HHTTCSCEEEEECCCC-TTTHHHHHHHHHHHHHHC--SSCEEEESSCCSHHHHHHHHHHTCSEEEESHHHHH
T ss_pred HHCCCCEEEEEecccc-ccccccHHHHHHHHHhhc--CCcceeecccchhhhhhhHhhcCCcEEEecccccC
Confidence 5678998876542221 222345678888888877 89999999999999999999999999999987543
|
| >d1thfd_ c.1.2.1 (D:) Cyclase subunit (or domain) of imidazoleglycerolphosphate synthase HisF {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Ribulose-phoshate binding barrel family: Histidine biosynthesis enzymes domain: Cyclase subunit (or domain) of imidazoleglycerolphosphate synthase HisF species: Thermotoga maritima [TaxId: 2336]
Probab=96.51 E-value=0.0045 Score=54.65 Aligned_cols=69 Identities=17% Similarity=0.258 Sum_probs=53.3
Q ss_pred HHcCCcEEEEcCCCccCCCCCcchHHHHHHHHHHcCCCceEEEecCCCCHHHHHHHHHhCcCEEEecHHHHH
Q 017781 239 VQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFIGRPVVY 310 (366)
Q Consensus 239 ~~aGad~I~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~i~vi~~GGI~~~~dv~kalalGAd~V~igr~~l~ 310 (366)
.+.|+|.+.+-.--+ ........++.+.++.+.. .+|+.+.||||+-+|+.+.+.+||+-|.+|+..+.
T Consensus 40 ~~~g~dei~ivDld~-~~~~~~~~~~~i~~i~~~~--~~pi~vgGGIr~~e~i~~~l~~Ga~kviigs~~~~ 108 (253)
T d1thfd_ 40 SEIGIDELVFLDITA-SVEKRKTMLELVEKVAEQI--DIPFTVGGGIHDFETASELILRGADKVSINTAAVE 108 (253)
T ss_dssp HHTTCCEEEEEESSC-SSSHHHHHHHHHHHHHTTC--CSCEEEESSCCSHHHHHHHHHTTCSEEEESHHHHH
T ss_pred HHcCCCEEEEEeecc-cccCcccHHHHHHHHHhcc--CccceeecccccchhhhhHHhcCCCEEEEChHHhh
Confidence 567899988754221 1122334667777877766 89999999999999999999999999999997654
|
| >d2czda1 c.1.2.3 (A:1-206) Orotidine 5'-monophosphate decarboxylase (OMP decarboxylase) {Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Ribulose-phoshate binding barrel family: Decarboxylase domain: Orotidine 5'-monophosphate decarboxylase (OMP decarboxylase) species: Pyrococcus horikoshii [TaxId: 53953]
Probab=96.46 E-value=0.0062 Score=51.88 Aligned_cols=112 Identities=20% Similarity=0.226 Sum_probs=66.9
Q ss_pred HHHHHHHHHhcCCCEEE--Eecc---CHHH-----HHcCCcEEEEcCCCccC----------------CC----------
Q 017781 214 WKDVKWLQTITKLPILV--KGVL---TAED-----VQAGAAGIIVSNHGARQ----------------LD---------- 257 (366)
Q Consensus 214 ~~~i~~lr~~~~~pv~v--K~v~---~~~d-----~~aGad~I~vs~~gg~~----------------~~---------- 257 (366)
.+.++++++..+.||+. |..- +... .++|+|.++|+..+|.. ++
T Consensus 40 ~~~i~~l~~~~~~~if~DlK~~Di~~t~~~~~~~~~~~gad~~Tvh~~~g~~~i~~~~~~~~~~~~~~~s~~~~~~~~~~ 119 (206)
T d2czda1 40 VDIIRRLKEETGVEIIADLKLADIPNTNRLIARKVFGAGADYVIVHTFVGRDSVMAVKELGEIIMVVEMSHPGALEFINP 119 (206)
T ss_dssp TTHHHHHHHHHCCEEEEEEEECSCHHHHHHHHHHHHHTTCSEEEEESTTCHHHHHHHHTTSEEEEECCCCSGGGGTTTGG
T ss_pred HHHHHHHHHhcCCeEEEEeeeeeecccchheehhhccccccEEEeeecccHHHHHHhhhcccceEEEeccCCcccccccH
Confidence 34678888777878775 3321 2221 77899999998776631 00
Q ss_pred ------------------CCcchHHHHHHHHHHcCCCceEEEecCCC-CHHHHHHHHHhCcCEEEecHHHHHHhhhcCHH
Q 017781 258 ------------------YVPATIMALEEVVKATQGRIPVFLDGGVR-RGTDVFKALALGASGIFIGRPVVYSLAAEGEK 318 (366)
Q Consensus 258 ------------------~~~~~~~~l~~i~~~~~~~i~vi~~GGI~-~~~dv~kalalGAd~V~igr~~l~~l~~~G~~ 318 (366)
++....+.+..+++.++..+.++. .||+ .+.+..+++..|||.+.+||++..+ .-
T Consensus 120 ~~~~~~~~a~~~~~~g~~~~~~~~~~~~~~r~~~~~~~~i~~-pGI~~~~~~~~~ai~~Gad~iVvGR~I~~a---~d-- 193 (206)
T d2czda1 120 LTDRFIEVANEIEPFGVIAPGTRPERIGYIRDRLKEGIKILA-PGIGAQGGKAKDAVKAGADYIIVGRAIYNA---PN-- 193 (206)
T ss_dssp GHHHHHHHHHHHCCSEEECCCSSTHHHHHHHHHSCTTCEEEE-CCCCSSTTHHHHHHHHTCSEEEECHHHHTS---SS--
T ss_pred HHHHHHHHHHhcccccccccccCchhhhhhhhhhcccceEEC-CCccccCCCHHHHHHhCCCEEEEChhhccC---CC--
Confidence 001112334444444444454544 5555 3457788899999999999999653 12
Q ss_pred HHHHHHHHHHHHHH
Q 017781 319 GVRRVLEMLREEFE 332 (366)
Q Consensus 319 gv~~~~~~l~~el~ 332 (366)
....++.+++||+
T Consensus 194 -P~~aa~~i~~~ik 206 (206)
T d2czda1 194 -PREAAKAIYDEIR 206 (206)
T ss_dssp -HHHHHHHHHHHHC
T ss_pred -HHHHHHHHHHHhC
Confidence 2345566666653
|
| >d1vpxa_ c.1.10.1 (A:) Decameric fructose-6-phosphate aldolase/transaldolase {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Aldolase family: Class I aldolase domain: Decameric fructose-6-phosphate aldolase/transaldolase species: Thermotoga maritima [TaxId: 2336]
Probab=96.37 E-value=0.19 Score=42.82 Aligned_cols=95 Identities=21% Similarity=0.174 Sum_probs=70.5
Q ss_pred HHHHHHHHhcCCCEEEEeccCHHH----HHcCCcEEEEcCCCccCCCCCcchHHHHHHHHHHc---CCCceEEEecCCCC
Q 017781 215 KDVKWLQTITKLPILVKGVLTAED----VQAGAAGIIVSNHGARQLDYVPATIMALEEVVKAT---QGRIPVFLDGGVRR 287 (366)
Q Consensus 215 ~~i~~lr~~~~~pv~vK~v~~~~d----~~aGad~I~vs~~gg~~~~~~~~~~~~l~~i~~~~---~~~i~vi~~GGI~~ 287 (366)
+.++.|++. ++++-+=.+.+.+. .++|++.|.. .-||-.+.|......+.++.+.. +.+..|++ +.+|+
T Consensus 94 ~ai~~L~~~-Gi~~n~Tavfs~~Qa~~Aa~aga~yisp--y~gR~~d~g~d~~~~i~~~~~~~~~~~~~tkil~-AS~r~ 169 (218)
T d1vpxa_ 94 KAVKTLSAE-GIKTNVTLVFSPAQAILAAKAGATYVSP--FVGRMDDLSNDGMRMLGEIVEIYNNYGFETEIIA-ASIRH 169 (218)
T ss_dssp HHHHHHHHT-TCCEEEEEECSHHHHHHHHHHTCSEEEE--BHHHHHHTTSCHHHHHHHHHHHHHHHTCSCEEEE-BSCCS
T ss_pred HHHHHHHHc-CCceeeEEecCHHHHHHHHhcCCCEEEe--eecchhhhcccchhhHHHHHHHHhhhcccceeee-eccCC
Confidence 345666553 89999999999887 9999998753 33443344555566666665543 33667777 66999
Q ss_pred HHHHHHHHHhCcCEEEecHHHHHHhh
Q 017781 288 GTDVFKALALGASGIFIGRPVVYSLA 313 (366)
Q Consensus 288 ~~dv~kalalGAd~V~igr~~l~~l~ 313 (366)
..++.+++.+|||.+-+.-.++..+.
T Consensus 170 ~~~v~~a~~~G~d~iTip~~v~~~l~ 195 (218)
T d1vpxa_ 170 PMHVVEAALMGVDIVTMPFAVLEKLF 195 (218)
T ss_dssp HHHHHHHHHHTCSEEEECHHHHHHHT
T ss_pred HHHHHHHHHcCCCEEEcCHHHHHHHH
Confidence 99999999999999999999888764
|
| >d1ka9f_ c.1.2.1 (F:) Cyclase subunit (or domain) of imidazoleglycerolphosphate synthase HisF {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Ribulose-phoshate binding barrel family: Histidine biosynthesis enzymes domain: Cyclase subunit (or domain) of imidazoleglycerolphosphate synthase HisF species: Thermus thermophilus [TaxId: 274]
Probab=96.35 E-value=0.0059 Score=53.76 Aligned_cols=69 Identities=25% Similarity=0.296 Sum_probs=52.3
Q ss_pred HHcCCcEEEEcCCCccCCCCCcchHHHHHHHHHHcCCCceEEEecCCCCHHHHHHHHHhCcCEEEecHHHHH
Q 017781 239 VQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFIGRPVVY 310 (366)
Q Consensus 239 ~~aGad~I~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~i~vi~~GGI~~~~dv~kalalGAd~V~igr~~l~ 310 (366)
.+.|+|.+.+-.-.+. ........+.+.++.+.+ .+|+.+.||||+.+|+.+.+.+||+-|.+|+..+.
T Consensus 40 ~~~g~dei~iiDl~~~-~~~~~~~~~~i~~i~~~~--~~pi~vgGGIrs~e~~~~ll~~Ga~kVii~s~~~~ 108 (251)
T d1ka9f_ 40 DEAGADELVFLDISAT-HEERAILLDVVARVAERV--FIPLTVGGGVRSLEDARKLLLSGADKVSVNSAAVR 108 (251)
T ss_dssp HHHTCSCEEEEECCSS-TTCHHHHHHHHHHHHTTC--CSCEEEESSCCSHHHHHHHHHHTCSEEEECHHHHH
T ss_pred HHcCCCEEEEEecccc-cccchhHHHHHHHHHhcc--CcchheeccccCHHHHHHHHHcCCCEEEECchhhh
Confidence 5668888876542221 112234567788887766 79999999999999999999999999999997643
|
| >d1qpoa1 c.1.17.1 (A:117-285) Quinolinic acid phosphoribosyltransferase (Nicotinate-nucleotide pyrophosphorylase, NadC), C-terminal domain {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Nicotinate/Quinolinate PRTase C-terminal domain-like family: NadC C-terminal domain-like domain: Quinolinic acid phosphoribosyltransferase (Nicotinate-nucleotide pyrophosphorylase, NadC), C-terminal domain species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=96.28 E-value=0.01 Score=49.23 Aligned_cols=86 Identities=9% Similarity=0.008 Sum_probs=61.7
Q ss_pred HHHHHHHHhcCCCEEEEeccCHHH----HHcCCcEEEEcCCCccCCCCCcchHHHHHHHHHHcCCCceEEEecCCCCHHH
Q 017781 215 KDVKWLQTITKLPILVKGVLTAED----VQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTD 290 (366)
Q Consensus 215 ~~i~~lr~~~~~pv~vK~v~~~~d----~~aGad~I~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~i~vi~~GGI~~~~d 290 (366)
+.++.+|+..+...+.-.+.+.++ .++|+|.|-+.|. +|..+....+..+.....+.+-++||| +.+.
T Consensus 68 ~~i~~~k~~~~~~~I~VEv~s~~q~~~a~~~~~diImLDN~-------sp~~~k~~v~~~~~~~~~i~lEaSGgI-~~~n 139 (169)
T d1qpoa1 68 DALRAVRNAAPDLPCEVEVDSLEQLDAVLPEKPELILLDNF-------AVWQTQTAVQRRDSRAPTVMLESSGGL-SLQT 139 (169)
T ss_dssp HHHHHHHHHCTTSCEEEEESSHHHHHHHGGGCCSEEEEETC-------CHHHHHHHHHHHHHHCTTCEEEEESSC-CTTT
T ss_pred hhhhhhhhhcCCCceEEEeccHHHhhhhhhcCCcEEEecCc-------ChHhHHHHHHHhhccCCeeEEEEeCCC-CHHH
Confidence 347778877644445556677776 8899999999884 343433222333333457889999999 7888
Q ss_pred HHHHHHhCcCEEEecHHH
Q 017781 291 VFKALALGASGIFIGRPV 308 (366)
Q Consensus 291 v~kalalGAd~V~igr~~ 308 (366)
+.++...|+|.+.+|.+.
T Consensus 140 i~~ya~~GvD~IS~galt 157 (169)
T d1qpoa1 140 AATYAETGVDYLAVGALT 157 (169)
T ss_dssp HHHHHHTTCSEEECGGGT
T ss_pred HHHHHHcCCCEEECCccc
Confidence 999999999999999654
|
| >d1qo2a_ c.1.2.1 (A:) Phosphoribosylformimino-5-aminoimidazole carboxamide ribotite isomerase HisA {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Ribulose-phoshate binding barrel family: Histidine biosynthesis enzymes domain: Phosphoribosylformimino-5-aminoimidazole carboxamide ribotite isomerase HisA species: Thermotoga maritima [TaxId: 2336]
Probab=96.21 E-value=0.002 Score=56.54 Aligned_cols=68 Identities=13% Similarity=0.244 Sum_probs=50.2
Q ss_pred HHcCCcEEEEcCC--CccCCCCCcchHHHHHHHHHHcCCCceEEEecCCCCHHHHHHHHHhC------cCEEEecHHHHH
Q 017781 239 VQAGAAGIIVSNH--GARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALG------ASGIFIGRPVVY 310 (366)
Q Consensus 239 ~~aGad~I~vs~~--gg~~~~~~~~~~~~l~~i~~~~~~~i~vi~~GGI~~~~dv~kalalG------Ad~V~igr~~l~ 310 (366)
.+.|+.-|.+..- -|+. .| +.++.+..+.+.. ++|||++||+++.+|+.++..+| +++|.+|++|.+
T Consensus 154 ~~~g~~eii~~dId~dGt~--~G-~d~~l~~~i~~~~--~~pvi~~GGv~s~~di~~l~~ig~~~~~~~~gvivG~al~~ 228 (241)
T d1qo2a_ 154 KEYGLEEIVHTEIEKDGTL--QE-HDFSLTKKIAIEA--EVKVLAAGGISSENSLKTAQKVHTETNGLLKGVIVGRAFLE 228 (241)
T ss_dssp HTTTCCEEEEEETTHHHHT--CC-CCHHHHHHHHHHH--TCEEEEESSCCSHHHHHHHHHHHHHTTTSEEEEEECHHHHT
T ss_pred hccccceEEEeehhhhhhc--cc-cchhhhhhhhccC--CceEEEECCCCCHHHHHHHHHccccccCCEeeEEEHHHHHC
Confidence 3456666665431 1210 12 4778888887776 79999999999999999998866 889999999865
Q ss_pred H
Q 017781 311 S 311 (366)
Q Consensus 311 ~ 311 (366)
+
T Consensus 229 g 229 (241)
T d1qo2a_ 229 G 229 (241)
T ss_dssp T
T ss_pred C
Confidence 4
|
| >d1vzwa1 c.1.2.1 (A:2-240) Phosphoribosylformimino-5-aminoimidazole carboxamide ribotite isomerase HisA {Streptomyces coelicolor [TaxId: 1902]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Ribulose-phoshate binding barrel family: Histidine biosynthesis enzymes domain: Phosphoribosylformimino-5-aminoimidazole carboxamide ribotite isomerase HisA species: Streptomyces coelicolor [TaxId: 1902]
Probab=96.01 E-value=0.0048 Score=53.90 Aligned_cols=67 Identities=25% Similarity=0.320 Sum_probs=52.3
Q ss_pred HHcCCcEEEEcCCCccCCCCCcchHHHHHHHHHHcCCCceEEEecCCCCHHHHHHHHHhCcCEEEecHHHH
Q 017781 239 VQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFIGRPVV 309 (366)
Q Consensus 239 ~~aGad~I~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~i~vi~~GGI~~~~dv~kalalGAd~V~igr~~l 309 (366)
.+.|+|.|.+-.=.+.. ........+..+.+.+ .+||.+.|||++-+|+.+.+.+||+.|.+++..+
T Consensus 41 ~~~ga~~l~i~DLd~~~--~~~~~~~~i~~i~~~~--~~pi~vGGGIrs~~~~~~ll~~Ga~kVvi~s~~~ 107 (239)
T d1vzwa1 41 QRSGAEWLHLVDLDAAF--GTGDNRALIAEVAQAM--DIKVELSGGIRDDDTLAAALATGCTRVNLGTAAL 107 (239)
T ss_dssp HHTTCSEEEEEEHHHHH--TSCCCHHHHHHHHHHC--SSEEEEESSCCSHHHHHHHHHTTCSEEEECHHHH
T ss_pred HHcCCCEEEEEeecccc--cccchHHHHHHHHhhc--CcceEeecccccchhhhhhhccccccchhhHHhh
Confidence 56788988875421111 1224567788888877 7999999999999999999999999999999764
|
| >d1rpxa_ c.1.2.2 (A:) D-ribulose-5-phosphate 3-epimerase {Potato (Solanum tuberosum) [TaxId: 4113]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Ribulose-phoshate binding barrel family: D-ribulose-5-phosphate 3-epimerase domain: D-ribulose-5-phosphate 3-epimerase species: Potato (Solanum tuberosum) [TaxId: 4113]
Probab=95.66 E-value=0.3 Score=41.92 Aligned_cols=48 Identities=21% Similarity=0.367 Sum_probs=35.4
Q ss_pred chHHHHHHHHHHc---CCCceEEEecCCCCHHHHHHHHHhCcCEEEecHHHH
Q 017781 261 ATIMALEEVVKAT---QGRIPVFLDGGVRRGTDVFKALALGASGIFIGRPVV 309 (366)
Q Consensus 261 ~~~~~l~~i~~~~---~~~i~vi~~GGI~~~~dv~kalalGAd~V~igr~~l 309 (366)
..++-+.++++.. ..++.|.+||||.. +-+.+...+|||.+.+|+.++
T Consensus 161 ~~~~kI~~~~~~~~~~~~~~~I~vDGGIn~-~~i~~l~~~Gad~~V~GS~if 211 (230)
T d1rpxa_ 161 SQVKKISDLRKICAERGLNPWIEVDGGVGP-KNAYKVIEAGANALVAGSAVF 211 (230)
T ss_dssp THHHHHHHHHHHHHHHTCCCEEEEESSCCT-TTHHHHHHHTCCEEEESHHHH
T ss_pred hhHHHHHHHHHHHHhcCCceEEEEECCcCH-HHHHHHHHcCCCEEEEChHHH
Confidence 3556566655443 23688999999965 467788889999999998754
|
| >d1tqja_ c.1.2.2 (A:) D-ribulose-5-phosphate 3-epimerase {Synechocystis sp. PCC 6803 [TaxId: 1148]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Ribulose-phoshate binding barrel family: D-ribulose-5-phosphate 3-epimerase domain: D-ribulose-5-phosphate 3-epimerase species: Synechocystis sp. PCC 6803 [TaxId: 1148]
Probab=95.39 E-value=0.24 Score=42.20 Aligned_cols=49 Identities=20% Similarity=0.373 Sum_probs=35.5
Q ss_pred cchHHHHHHHHHHc---CCCceEEEecCCCCHHHHHHHHHhCcCEEEecHHHH
Q 017781 260 PATIMALEEVVKAT---QGRIPVFLDGGVRRGTDVFKALALGASGIFIGRPVV 309 (366)
Q Consensus 260 ~~~~~~l~~i~~~~---~~~i~vi~~GGI~~~~dv~kalalGAd~V~igr~~l 309 (366)
+..++-+.++++.. ..++.|.+||||.. +-+-+...+|||.+.+|+.++
T Consensus 152 ~~~~~ki~~l~~~~~~~~~~~~I~VDGGIn~-~~i~~l~~~Gad~~V~GS~if 203 (221)
T d1tqja_ 152 PEVLPKIRALRQMCDERGLDPWIEVDGGLKP-NNTWQVLEAGANAIVAGSAVF 203 (221)
T ss_dssp GGGHHHHHHHHHHHHHHTCCCEEEEESSCCT-TTTHHHHHHTCCEEEESHHHH
T ss_pred hhhHHHHHHHHhhhhccccceEEEEECCcCH-HHHHHHHHcCCCEEEEChHHh
Confidence 34556666655543 23688999999974 357777889999999998753
|
| >d1l6wa_ c.1.10.1 (A:) Decameric fructose-6-phosphate aldolase/transaldolase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Aldolase family: Class I aldolase domain: Decameric fructose-6-phosphate aldolase/transaldolase species: Escherichia coli [TaxId: 562]
Probab=95.39 E-value=0.091 Score=44.99 Aligned_cols=95 Identities=17% Similarity=0.158 Sum_probs=71.1
Q ss_pred HHHHHHHHhcCCCEEEEeccCHHH----HHcCCcEEEEcCCCccCCCCCcchHHHHHHHHHHc---CCCceEEEecCCCC
Q 017781 215 KDVKWLQTITKLPILVKGVLTAED----VQAGAAGIIVSNHGARQLDYVPATIMALEEVVKAT---QGRIPVFLDGGVRR 287 (366)
Q Consensus 215 ~~i~~lr~~~~~pv~vK~v~~~~d----~~aGad~I~vs~~gg~~~~~~~~~~~~l~~i~~~~---~~~i~vi~~GGI~~ 287 (366)
+.++.|.+. ++++-+=.+.+... .++|++.|.. .-||-.+.|....+.+.++.+.+ +.+..|++ +.+|+
T Consensus 94 ~ai~~L~~~-Gi~vn~Tavfs~~Qa~~Aa~aga~yvsp--y~gR~~d~g~dg~~~i~~~~~~~~~~~~~tkIl~-AS~R~ 169 (220)
T d1l6wa_ 94 AAIKMLKAE-GIPTLGTAVYGAAQGLLSALAGAEYVAP--YVNRIDAQGGSGIQTVTDLHQLLKMHAPQAKVLA-ASFKT 169 (220)
T ss_dssp HHHHHHHHH-TCCEEEEEECSHHHHHHHHHHTCSEEEE--BHHHHHHTTSCHHHHHHHHHHHHHHHCTTCEEEE-BCCSS
T ss_pred chhhhhhhc-ccchhhhhcccHHHHHHhhhcCCcEEee--eeeehhhcccCChHHHHHHHHHHHhcCCCceEee-hhcCC
Confidence 345555443 89999999999887 8999998754 33554455556666766666543 33566666 67999
Q ss_pred HHHHHHHHHhCcCEEEecHHHHHHhh
Q 017781 288 GTDVFKALALGASGIFIGRPVVYSLA 313 (366)
Q Consensus 288 ~~dv~kalalGAd~V~igr~~l~~l~ 313 (366)
..++.+++.+|||.+-+.-.++..+.
T Consensus 170 ~~~v~~~~~~G~d~iTip~~v~~~l~ 195 (220)
T d1l6wa_ 170 PRQALDCLLAGCESITLPLDVAQQMI 195 (220)
T ss_dssp HHHHHHHHHTTCSEEEECHHHHHHTT
T ss_pred HHHHHHHHHcCCCEEEcCHHHHHHHh
Confidence 99999999999999999999988764
|
| >d1o4ua1 c.1.17.1 (A:104-273) Quinolinic acid phosphoribosyltransferase (Nicotinate-nucleotide pyrophosphorylase, NadC), C-terminal domain {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Nicotinate/Quinolinate PRTase C-terminal domain-like family: NadC C-terminal domain-like domain: Quinolinic acid phosphoribosyltransferase (Nicotinate-nucleotide pyrophosphorylase, NadC), C-terminal domain species: Thermotoga maritima [TaxId: 2336]
Probab=95.37 E-value=0.013 Score=48.61 Aligned_cols=85 Identities=24% Similarity=0.238 Sum_probs=59.9
Q ss_pred HHHHHHHHhcC--CCEEEEeccCHHH----HHcCCcEEEEcCCCccCCCCCcchHHHHHHHHHHcCCCceEEEecCCCCH
Q 017781 215 KDVKWLQTITK--LPILVKGVLTAED----VQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRG 288 (366)
Q Consensus 215 ~~i~~lr~~~~--~pv~vK~v~~~~d----~~aGad~I~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~i~vi~~GGI~~~ 288 (366)
+.++.+|+..+ .+|.| .+.+.++ .++|+|.|.+.|. .|..+..+.+..+....++.+-++||| +.
T Consensus 66 ~~~~~~~~~~~~~~~I~V-Ev~~~~e~~~a~~~g~d~i~LDn~-------~pe~~k~~~~~lk~~~~~i~lEaSGGI-~~ 136 (170)
T d1o4ua1 66 RAVQEVRKIIPFTTKIEV-EVENLEDALRAVEAGADIVMLDNL-------SPEEVKDISRRIKDINPNVIVEVSGGI-TE 136 (170)
T ss_dssp HHHHHHHTTSCTTSCEEE-EESSHHHHHHHHHTTCSEEEEESC-------CHHHHHHHHHHHHHHCTTSEEEEEECC-CT
T ss_pred HHHHHHHhhCCCCceEEE-EeCcHHHHHHHHhcCccEEEEcCc-------ChhhHhHHHHHHHhhCCcEEEEEECCC-CH
Confidence 34778877653 34444 4667766 8999999999883 333443333333444567999999999 56
Q ss_pred HHHHHHHHhCcCEEEecHHH
Q 017781 289 TDVFKALALGASGIFIGRPV 308 (366)
Q Consensus 289 ~dv~kalalGAd~V~igr~~ 308 (366)
+.+.+....|+|.+.+|.+.
T Consensus 137 ~ni~~~a~~GVD~Is~g~lt 156 (170)
T d1o4ua1 137 ENVSLYDFETVDVISSSRLT 156 (170)
T ss_dssp TTGGGGCCTTCCEEEEGGGT
T ss_pred HHHHHHHHcCCCEEEcCccc
Confidence 77777777999999999764
|
| >d1wx0a1 c.1.10.1 (A:1-211) Decameric fructose-6-phosphate aldolase/transaldolase {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Aldolase family: Class I aldolase domain: Decameric fructose-6-phosphate aldolase/transaldolase species: Thermus thermophilus [TaxId: 274]
Probab=95.23 E-value=0.061 Score=45.80 Aligned_cols=93 Identities=22% Similarity=0.166 Sum_probs=70.0
Q ss_pred HHHHHHHhcCCCEEEEeccCHHH----HHcCCcEEEEcCCCccCCCCCcchHHHHHHHHHHc---CCCceEEEecCCCCH
Q 017781 216 DVKWLQTITKLPILVKGVLTAED----VQAGAAGIIVSNHGARQLDYVPATIMALEEVVKAT---QGRIPVFLDGGVRRG 288 (366)
Q Consensus 216 ~i~~lr~~~~~pv~vK~v~~~~d----~~aGad~I~vs~~gg~~~~~~~~~~~~l~~i~~~~---~~~i~vi~~GGI~~~ 288 (366)
.++.+++. ++++-+=.+.+... .++|+++|.. .-||-.+.+......+.++++.+ +.+..|++ .-+|+.
T Consensus 102 a~~~L~~~-Gi~vn~T~vfs~~Qa~~Aa~aga~yisp--yvgR~~d~g~d~~~~~~~~~~~~~~~~~~tkil~-AS~R~~ 177 (211)
T d1wx0a1 102 ACKRLSAE-GIKVNMTLIFSANQALLAARAGASYVSP--FLGRVDDISWDGGELLREIVEMIQVQDLPVKVIA-ASIRHP 177 (211)
T ss_dssp HHHHHHHT-TCCEEEEEECSHHHHHHHHHTTCSEEEE--BHHHHHHTTSCHHHHHHHHHHHHHHTTCSCEEEE-BCCCSH
T ss_pred HHHHHhhc-CCceeEEEecCHHHHHHHHHcCCCEEEE--eeecchhccccchhHHHHHHHHHHhccccceeEe-eecCCH
Confidence 45555553 89999999999887 9999998864 33554455556666666666554 23566777 559999
Q ss_pred HHHHHHHHhCcCEEEecHHHHHHh
Q 017781 289 TDVFKALALGASGIFIGRPVVYSL 312 (366)
Q Consensus 289 ~dv~kalalGAd~V~igr~~l~~l 312 (366)
.++.+++.+|+|.+-+.-+++..+
T Consensus 178 ~~~~~~~~~G~d~vTi~~~v~~~l 201 (211)
T d1wx0a1 178 RHVTEAALLGADIATMPHAVFKQL 201 (211)
T ss_dssp HHHHHHHHTTCSEEEECHHHHHHH
T ss_pred HHHHHHHHcCCCEEEeCHHHHHHH
Confidence 999999999999999998877654
|
| >d1gvfa_ c.1.10.2 (A:) Tagatose-1,6-bisphosphate aldolase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Aldolase family: Class II FBP aldolase domain: Tagatose-1,6-bisphosphate aldolase species: Escherichia coli [TaxId: 562]
Probab=95.18 E-value=0.34 Score=42.88 Aligned_cols=98 Identities=18% Similarity=0.284 Sum_probs=67.5
Q ss_pred HHcCCcEEEEcC---CCccCCCCCcc--hHHHHHHHHHHcCCCceEEEecCCCCH-HHHHHHHHhCcCEEEecHHHHHHh
Q 017781 239 VQAGAAGIIVSN---HGARQLDYVPA--TIMALEEVVKATQGRIPVFLDGGVRRG-TDVFKALALGASGIFIGRPVVYSL 312 (366)
Q Consensus 239 ~~aGad~I~vs~---~gg~~~~~~~~--~~~~l~~i~~~~~~~i~vi~~GGI~~~-~dv~kalalGAd~V~igr~~l~~l 312 (366)
.+.|+|.+-++. ||-+ .+.+ .++.|.++.+.+ ++|+..=||=..+ +++.+++..|..-|-|++-+-.+.
T Consensus 164 ~~TgvD~LAvaiGt~HG~y---~~~p~l~~~~L~~i~~~~--~vPLVlHGgSG~~~e~i~~ai~~Gi~KiNi~T~l~~a~ 238 (284)
T d1gvfa_ 164 ELTGVDSLAVAIGTAHGLY---SKTPKIDFQRLAEIREVV--DVPLVLHGASDVPDEFVRRTIELGVTKVNVATELKIAF 238 (284)
T ss_dssp HHHCCSEEEECSSCCSSCC---SSCCCCCHHHHHHHHHHC--CSCEEECCCTTCCHHHHHHHHHTTEEEEEECHHHHHHH
T ss_pred HHhCCCEEeeecCceeecc---CCCCccccchhhhhhccc--cCCeEeeCCCCCCHHHHHHHHHcCeEEEEechHHHHHH
Confidence 677899999874 4432 2333 568899999988 7999988865555 456688899999999999774432
Q ss_pred h-------hcCH------HHHHHHHHHHHHHHHHHHHHcCCC
Q 017781 313 A-------AEGE------KGVRRVLEMLREEFELAMALSGCR 341 (366)
Q Consensus 313 ~-------~~G~------~gv~~~~~~l~~el~~~m~~~G~~ 341 (366)
. ...+ .-.....+.+++-++..|+.+|..
T Consensus 239 ~~~~~~~l~~n~~~~d~~~~~~~~~~a~~~~v~~~i~~fGs~ 280 (284)
T d1gvfa_ 239 AGAVKAWFAENPQGNDPRYYMRVGMDAMKEVVRNKINVCGSA 280 (284)
T ss_dssp HHHHHHHHHHCTTCCCHHHHHHHHHHHHHHHHHHHHHHHTCT
T ss_pred HHHHHHHHHhCCCCCCHHHHHHHHHHHHHHHHHHHHHHhCCC
Confidence 1 0111 123444566777778888888864
|
| >d1jvna1 c.1.2.1 (A:230-552) Cyclase subunit (or domain) of imidazoleglycerolphosphate synthase HisF {Baker's yeast (Saccharomyces cerevisiae), His7 [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Ribulose-phoshate binding barrel family: Histidine biosynthesis enzymes domain: Cyclase subunit (or domain) of imidazoleglycerolphosphate synthase HisF species: Baker's yeast (Saccharomyces cerevisiae), His7 [TaxId: 4932]
Probab=95.13 E-value=0.0079 Score=55.03 Aligned_cols=70 Identities=23% Similarity=0.287 Sum_probs=50.6
Q ss_pred HHcCCcEEEEcCCCccC--CCCCcchHHHHHHHHHHcCCCceEEEecCCCCHHH-----------HHHHHHhCcCEEEec
Q 017781 239 VQAGAAGIIVSNHGARQ--LDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTD-----------VFKALALGASGIFIG 305 (366)
Q Consensus 239 ~~aGad~I~vs~~gg~~--~~~~~~~~~~l~~i~~~~~~~i~vi~~GGI~~~~d-----------v~kalalGAd~V~ig 305 (366)
.+.|||.|++-.--+.. ...-.+.++.+.++.+.+ .+||.+.||||+-+| +.+.+.+|||-|.||
T Consensus 58 ~~~gaDeL~ivDidas~~~~~~~~~~~~~I~~i~~~~--~vPi~vGGGIrsi~di~~~~~~~~e~A~~ll~~GadKVvI~ 135 (323)
T d1jvna1 58 YQQGADEVTFLNITSFRDCPLKDTPMLEVLKQAAKTV--FVPLTVGGGIKDIVDVDGTKIPALEVASLYFRSGADKVSIG 135 (323)
T ss_dssp HHTTCSEEEEEEEC---CCCGGGCHHHHHHHHHTTTC--CSCEEEESSCSCEECTTCCEECHHHHHHHHHHHTCSEEEEC
T ss_pred HHCCCCEEEEEECcCCCCCcCCCchHHHHHHhhcccc--ceeEEEecCcccHHHhhhccchhhHHHHHHHHcCCCeEEec
Confidence 78899999864311110 001124567787777766 799999999999766 578888999999999
Q ss_pred HHHHH
Q 017781 306 RPVVY 310 (366)
Q Consensus 306 r~~l~ 310 (366)
+..+.
T Consensus 136 T~ai~ 140 (323)
T d1jvna1 136 TDAVY 140 (323)
T ss_dssp HHHHH
T ss_pred hHHhh
Confidence 98764
|
| >d1xkya1 c.1.10.1 (A:1-292) Dihydrodipicolinate synthase {Bacillus anthracis [TaxId: 1392]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Aldolase family: Class I aldolase domain: Dihydrodipicolinate synthase species: Bacillus anthracis [TaxId: 1392]
Probab=95.05 E-value=0.029 Score=49.87 Aligned_cols=86 Identities=15% Similarity=0.324 Sum_probs=57.1
Q ss_pred HHcCCcEEEEcCCCccCCCCCcc-hHHHHHHHHHHcCCCceEEEecCCCCHHHHHH----HHHhCcCEEEecHHHHHHhh
Q 017781 239 VQAGAAGIIVSNHGARQLDYVPA-TIMALEEVVKATQGRIPVFLDGGVRRGTDVFK----ALALGASGIFIGRPVVYSLA 313 (366)
Q Consensus 239 ~~aGad~I~vs~~gg~~~~~~~~-~~~~l~~i~~~~~~~i~vi~~GGI~~~~dv~k----alalGAd~V~igr~~l~~l~ 313 (366)
.+.|+|++.+.++.|....-... -.+.+..+.+.+++++|||+.-|-.+..++++ |..+|||++++..|+.+..
T Consensus 34 ~~~Gv~gl~~~G~tGE~~~Ls~~Er~~l~~~~~~~~~~~~~vi~gv~~~s~~~~i~~a~~a~~~Gad~ilv~pP~~~~~- 112 (292)
T d1xkya1 34 IDNGTTAIVVGGTTGESPTLTSEEKVALYRHVVSVVDKRVPVIAGTGSNNTHASIDLTKKATEVGVDAVMLVAPYYNKP- 112 (292)
T ss_dssp HHTTCCEEEESSTTTTGGGSCHHHHHHHHHHHHHHHTTSSCEEEECCCSCHHHHHHHHHHHHHTTCSEEEEECCCSSCC-
T ss_pred HHCCCCEEEECeEccchhhCCHHHHHHHHHHHHHHhCCCceEEEecCcccHHHHHHHHHHHHHcCCCEEEECCCCCCCC-
Confidence 56899999998776533211221 23456666666777899998888777777653 4568999999999976642
Q ss_pred hcCHHHHHHHHHHH
Q 017781 314 AEGEKGVRRVLEML 327 (366)
Q Consensus 314 ~~G~~gv~~~~~~l 327 (366)
.++++.++++.+
T Consensus 113 --s~~~i~~~~~~v 124 (292)
T d1xkya1 113 --SQEGMYQHFKAI 124 (292)
T ss_dssp --CHHHHHHHHHHH
T ss_pred --CHHHHHHHHHHH
Confidence 345555444443
|
| >d1xxxa1 c.1.10.1 (A:5-300) Dihydrodipicolinate synthase {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Aldolase family: Class I aldolase domain: Dihydrodipicolinate synthase species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=95.00 E-value=0.035 Score=49.55 Aligned_cols=103 Identities=21% Similarity=0.298 Sum_probs=67.2
Q ss_pred CCCCCHHHHHHHHHhcCCCEEEEeccCHHHHHcCCcEEEEcCCCccCCCCCcc-hHHHHHHHHHHcCCCceEEEecCCCC
Q 017781 209 DRSLSWKDVKWLQTITKLPILVKGVLTAEDVQAGAAGIIVSNHGARQLDYVPA-TIMALEEVVKATQGRIPVFLDGGVRR 287 (366)
Q Consensus 209 d~~~~~~~i~~lr~~~~~pv~vK~v~~~~d~~aGad~I~vs~~gg~~~~~~~~-~~~~l~~i~~~~~~~i~vi~~GGI~~ 287 (366)
|..++++.++.+.+.+ .+.|+++|.+.++.|....-... -.+.+..+++.+++++|+++.-|=.+
T Consensus 22 dg~iD~~~l~~~i~~l--------------i~~Gv~Gi~v~G~tGE~~~Ls~eEr~~l~~~~~~~~~~~~~vi~g~~~~s 87 (296)
T d1xxxa1 22 DGSLDTATAARLANHL--------------VDQGCDGLVVSGTTGESPTTTDGEKIELLRAVLEAVGDRARVIAGAGTYD 87 (296)
T ss_dssp TSCBCHHHHHHHHHHH--------------HHTTCSEEEESSTTTTTTTSCHHHHHHHHHHHHHHHTTTSEEEEECCCSC
T ss_pred CcCcCHHHHHHHHHHH--------------HHcCCCEEEECeeccchhhCCHHHHHHHHHHHHHHhccccceEeccccch
Confidence 3456676665554432 56799999998776643322222 23455556667777899988777777
Q ss_pred HHHHHH----HHHhCcCEEEecHHHHHHhhhcCHHHHHHHHHHHH
Q 017781 288 GTDVFK----ALALGASGIFIGRPVVYSLAAEGEKGVRRVLEMLR 328 (366)
Q Consensus 288 ~~dv~k----alalGAd~V~igr~~l~~l~~~G~~gv~~~~~~l~ 328 (366)
..++++ |..+|||++++..|+.+. .+++++.++++.+.
T Consensus 88 ~~~~i~~a~~a~~~Gad~v~i~~P~~~~---~~~~~l~~~~~~v~ 129 (296)
T d1xxxa1 88 TAHSIRLAKACAAEGAHGLLVVTPYYSK---PPQRGLQAHFTAVA 129 (296)
T ss_dssp HHHHHHHHHHHHHHTCSEEEEECCCSSC---CCHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHhcCCeEEEEeccCCC---CCHHHHHHHHHHHH
Confidence 777664 445899999999998764 24555555555443
|
| >d1viza_ c.1.4.1 (A:) PcrB protein homolog YerE {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: FMN-linked oxidoreductases family: FMN-linked oxidoreductases domain: PcrB protein homolog YerE species: Bacillus subtilis [TaxId: 1423]
Probab=94.88 E-value=0.027 Score=48.69 Aligned_cols=46 Identities=22% Similarity=0.296 Sum_probs=36.2
Q ss_pred HHHHHHHHHHcCCCceEEEecCCCCHHHHHHHHHhCcCEEEecHHHHH
Q 017781 263 IMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFIGRPVVY 310 (366)
Q Consensus 263 ~~~l~~i~~~~~~~i~vi~~GGI~~~~dv~kalalGAd~V~igr~~l~ 310 (366)
.+.+..+++.+ .++||++-+||++++++.+ ++.|||+|.+|+++..
T Consensus 169 ~~~~~~v~~~~-~~~Pl~VGFGIst~e~a~~-v~~~ADgVVVGSAiv~ 214 (229)
T d1viza_ 169 IEAVKKTKAVL-ETSTLFYGGGIKDAETAKQ-YAEHADVIVVGNAVYE 214 (229)
T ss_dssp HHHHHHHHHTC-SSSEEEEESSCCSHHHHHH-HHTTCSEEEECTHHHH
T ss_pred chhHHHHHhhc-cCcceEEEcccCCHHHHHH-HHcCCCEEEECHHHHh
Confidence 34555555554 4799999999999999966 4579999999999864
|
| >d1tqxa_ c.1.2.2 (A:) D-ribulose-5-phosphate 3-epimerase {Plasmodium falciparum [TaxId: 5833]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Ribulose-phoshate binding barrel family: D-ribulose-5-phosphate 3-epimerase domain: D-ribulose-5-phosphate 3-epimerase species: Plasmodium falciparum [TaxId: 5833]
Probab=94.88 E-value=0.095 Score=44.84 Aligned_cols=84 Identities=13% Similarity=0.219 Sum_probs=56.1
Q ss_pred cCCcEEEEcC-CCc-cCCCCCcchHHHHHHHHHHcCCCceEEEecCCCCHHHHHHHHHhCcCEEEecHHHHHHhhhcCHH
Q 017781 241 AGAAGIIVSN-HGA-RQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFIGRPVVYSLAAEGEK 318 (366)
Q Consensus 241 aGad~I~vs~-~gg-~~~~~~~~~~~~l~~i~~~~~~~i~vi~~GGI~~~~dv~kalalGAd~V~igr~~l~~l~~~G~~ 318 (366)
..+|.|.+-. +.| ......+..++-+.++++.. .++.|.+||||.. +.+.+...+|||.+..|+.+ |. .+
T Consensus 134 ~~~d~vlim~V~pG~~GQ~f~~~~l~KI~~lr~~~-~~~~I~VDGGIn~-~~i~~l~~aGad~iV~GS~i-f~-----~~ 205 (221)
T d1tqxa_ 134 NLINTVLVMTVEPGFGGQSFMHDMMGKVSFLRKKY-KNLNIQVDGGLNI-ETTEISASHGANIIVAGTSI-FN-----AE 205 (221)
T ss_dssp TCCSEEEEESSCTTCSSCCCCGGGHHHHHHHHHHC-TTCEEEEESSCCH-HHHHHHHHHTCCEEEESHHH-HT-----CS
T ss_pred ccccEEEEEeecccccccccCcchhHHHHHHHHhc-CCcceEEEcccCH-HhHHHHHHcCCCEEEEChHH-HC-----CC
Confidence 4689887543 222 22233456777787877654 4789999999954 57888889999999999875 42 11
Q ss_pred HHHHHHHHHHHHHH
Q 017781 319 GVRRVLEMLREEFE 332 (366)
Q Consensus 319 gv~~~~~~l~~el~ 332 (366)
-....++.|++.++
T Consensus 206 d~~~~i~~Lr~~i~ 219 (221)
T d1tqxa_ 206 DPKYVIDTMRVSVQ 219 (221)
T ss_dssp SHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHh
Confidence 23445666666554
|
| >d2a6na1 c.1.10.1 (A:1-292) Dihydrodipicolinate synthase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Aldolase family: Class I aldolase domain: Dihydrodipicolinate synthase species: Escherichia coli [TaxId: 562]
Probab=94.87 E-value=0.031 Score=49.78 Aligned_cols=88 Identities=16% Similarity=0.257 Sum_probs=61.7
Q ss_pred HHcCCcEEEEcCCCccCCCCCcc-hHHHHHHHHHHcCCCceEEEecCCCCHHHHHHHHH----hCcCEEEecHHHHHHhh
Q 017781 239 VQAGAAGIIVSNHGARQLDYVPA-TIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALA----LGASGIFIGRPVVYSLA 313 (366)
Q Consensus 239 ~~aGad~I~vs~~gg~~~~~~~~-~~~~l~~i~~~~~~~i~vi~~GGI~~~~dv~kala----lGAd~V~igr~~l~~l~ 313 (366)
.+.|++++.+.++.|-...-... ..+.+..+++...+++||++..|-.+..++++... +|||++++..|+++..
T Consensus 32 ~~~Gv~Gl~~~GstGE~~~Ls~~Er~~~~~~~~~~~~~~~~vi~g~~~~s~~~~i~~~~~a~~~Gad~~~~~pP~~~~~- 110 (292)
T d2a6na1 32 VASGTSAIVSVGTTGESATLNHDEHADVVMMTLDLADGRIPVIAGTGANATAEAISLTQRFNDSGIVGCLTVTPYYNRP- 110 (292)
T ss_dssp HHHTCCEEEESSTTTTGGGSCHHHHHHHHHHHHHHHTTSSCEEEECCCSSHHHHHHHHHTTTTSSCCEEEEECCCSSCC-
T ss_pred HHcCCCEEEECeeccchhhCCHHHHHHHhhhhhhhccccceeEeecccchHHHHHHHhccHHhcCCcceeccCCCCCCC-
Confidence 46799999998876643222222 23456666677778899999998888888886654 6999999999987642
Q ss_pred hcCHHHHHHHHHHHHH
Q 017781 314 AEGEKGVRRVLEMLRE 329 (366)
Q Consensus 314 ~~G~~gv~~~~~~l~~ 329 (366)
.++++.++++.+.+
T Consensus 111 --~~~~i~~~f~~v~~ 124 (292)
T d2a6na1 111 --SQEGLYQHFKAIAE 124 (292)
T ss_dssp --CHHHHHHHHHHHHH
T ss_pred --CHHHHHHHHHHHhh
Confidence 45666655555443
|
| >d2f6ua1 c.1.4.1 (A:1001-1231) (S)-3-O-geranylgeranylglyceryl phosphate synthase {Archaeon Archaeoglobus fulgidus [TaxId: 2234]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: FMN-linked oxidoreductases family: FMN-linked oxidoreductases domain: (S)-3-O-geranylgeranylglyceryl phosphate synthase species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]
Probab=94.86 E-value=0.023 Score=49.07 Aligned_cols=46 Identities=22% Similarity=0.277 Sum_probs=36.9
Q ss_pred HHHHHHHHHHcCCCceEEEecCCCCHHHHHHHHHhCcCEEEecHHHHH
Q 017781 263 IMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFIGRPVVY 310 (366)
Q Consensus 263 ~~~l~~i~~~~~~~i~vi~~GGI~~~~dv~kalalGAd~V~igr~~l~ 310 (366)
.+.+..+++.+ .++||++-+||++++++.++. -+||+|.+|++|..
T Consensus 175 ~~~~~~~~k~~-~~~Pv~VGFGI~s~e~a~~~~-~~ADgvIVGSaive 220 (231)
T d2f6ua1 175 PELVAEVKKVL-DKARLFYGGGIDSREKAREML-RYADTIIVGNVIYE 220 (231)
T ss_dssp HHHHHHHHHHC-SSSEEEEESCCCSHHHHHHHH-HHSSEEEECHHHHH
T ss_pred hhHHHHHHHhc-CCCCEEEEeCcCCHHHHHHHH-hcCCEEEEChHHhc
Confidence 45555666665 369999999999999997765 48999999999864
|
| >d1qopa_ c.1.2.4 (A:) Trp synthase alpha-subunit {Salmonella typhimurium [TaxId: 90371]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Ribulose-phoshate binding barrel family: Tryptophan biosynthesis enzymes domain: Trp synthase alpha-subunit species: Salmonella typhimurium [TaxId: 90371]
Probab=94.56 E-value=0.072 Score=47.05 Aligned_cols=38 Identities=32% Similarity=0.424 Sum_probs=32.1
Q ss_pred CHHHHHHHHHhcCCCEEEE-eccCHHH----HHcCCcEEEEcC
Q 017781 213 SWKDVKWLQTITKLPILVK-GVLTAED----VQAGAAGIIVSN 250 (366)
Q Consensus 213 ~~~~i~~lr~~~~~pv~vK-~v~~~~d----~~aGad~I~vs~ 250 (366)
.-+.++++|+.+++||+|. |+.++++ .+.|||+++|..
T Consensus 193 ~~~~i~~ik~~t~~Pv~vGFGI~~~e~v~~~~~~~ADGvIVGS 235 (267)
T d1qopa_ 193 LHHLIEKLKEYHAAPALQGFGISSPEQVSAAVRAGAAGAISGS 235 (267)
T ss_dssp CHHHHHHHHHTTCCCEEEESSCCSHHHHHHHHHTTCSEEEECH
T ss_pred HHHHHHHHhhhccCCceeecccCCHHHHHHHHhcCCCEEEECH
Confidence 4567999999999999999 6678877 678999999853
|
| >d1ojxa_ c.1.10.1 (A:) Archaeal fructose 1,6-bisphosphate aldolase {Archaeon Thermoproteus tenax [TaxId: 2271]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Aldolase family: Class I aldolase domain: Archaeal fructose 1,6-bisphosphate aldolase species: Archaeon Thermoproteus tenax [TaxId: 2271]
Probab=94.33 E-value=0.35 Score=41.86 Aligned_cols=61 Identities=31% Similarity=0.549 Sum_probs=41.6
Q ss_pred HHcCCcEEEEcCCCccCCCCCcchHHHHHHHHHHcCCCceEEEecCCC--CHHHHHH----HHHhCcCEEEecHHHH
Q 017781 239 VQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVR--RGTDVFK----ALALGASGIFIGRPVV 309 (366)
Q Consensus 239 ~~aGad~I~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~i~vi~~GGI~--~~~dv~k----alalGAd~V~igr~~l 309 (366)
.+.|||.|.+-- +...+...++.+.. ..+||+..||-. +.+++++ |+..||.++.+||.+.
T Consensus 167 ~ElGaDivK~~~---------p~~~~~~~~~v~~a-~~~pv~~~gG~~~~~~~~~l~~~~~a~~~Ga~G~~~GRni~ 233 (251)
T d1ojxa_ 167 LELGADAMKIKY---------TGDPKTFSWAVKVA-GKVPVLMSGGPKTKTEEDFLKQVEGVLEAGALGIAVGRNVW 233 (251)
T ss_dssp HHHTCSEEEECC---------CSSHHHHHHHHHHT-TTSCEEEECCSCCSSHHHHHHHHHHHHHTTCCEEEESHHHH
T ss_pred HHhCCCEEEecC---------CCcHHHHHHHHHhc-CCCceEEeCCCCCCCHHHHHHHHHHHHHCCCcEEeechhhh
Confidence 899999998732 12334444444332 268888888765 5666664 5667999999999874
|
| >d1geqa_ c.1.2.4 (A:) Trp synthase alpha-subunit {Archaeon Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Ribulose-phoshate binding barrel family: Tryptophan biosynthesis enzymes domain: Trp synthase alpha-subunit species: Archaeon Pyrococcus furiosus [TaxId: 2261]
Probab=94.27 E-value=0.076 Score=46.37 Aligned_cols=37 Identities=24% Similarity=0.463 Sum_probs=31.0
Q ss_pred HHHHHHHHHhcCCCEEEE-eccCHHH----HHcCCcEEEEcC
Q 017781 214 WKDVKWLQTITKLPILVK-GVLTAED----VQAGAAGIIVSN 250 (366)
Q Consensus 214 ~~~i~~lr~~~~~pv~vK-~v~~~~d----~~aGad~I~vs~ 250 (366)
.+.++++|+.+++|+.|. |+.++++ .+.|||+++|..
T Consensus 180 ~~~v~~vk~~t~~Pv~vGFGI~~~e~v~~~~~~~ADGvIVGS 221 (248)
T d1geqa_ 180 YDLLRRAKRICRNKVAVGFGVSKREHVVSLLKEGANGVVVGS 221 (248)
T ss_dssp HHHHHHHHHHCSSCEEEESCCCSHHHHHHHHHTTCSEEEECH
T ss_pred HHHHHHHhhhcccceeeecccCCHHHHHHHHhcCCCEEEECH
Confidence 456999999999999998 5678887 678999999843
|
| >d1zfja1 c.1.5.1 (A:2-94,A:221-492) Inosine monophosphate dehydrogenase (IMPDH) {Streptococcus pyogenes [TaxId: 1314]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Inosine monophosphate dehydrogenase (IMPDH) family: Inosine monophosphate dehydrogenase (IMPDH) domain: Inosine monophosphate dehydrogenase (IMPDH) species: Streptococcus pyogenes [TaxId: 1314]
Probab=94.27 E-value=0.085 Score=48.71 Aligned_cols=61 Identities=13% Similarity=0.237 Sum_probs=47.9
Q ss_pred HHcCCcEEEEcCCCccCCCCCcchHHHHHHHHHHcCCCceEEEecCCCCHHHHHHHHHhCcCEEEec
Q 017781 239 VQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFIG 305 (366)
Q Consensus 239 ~~aGad~I~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~i~vi~~GGI~~~~dv~kalalGAd~V~ig 305 (366)
.++|+|.|+++...|+ .....+.+.++++.. .+++||+ |.|.|++.+.+.+..|||+|-+|
T Consensus 116 ~~agvd~ivID~A~G~----s~~~~~~i~~ik~~~-~~~~iIa-GNV~T~e~a~~L~~aGaD~VkVG 176 (365)
T d1zfja1 116 FEAGADAIVIDTAHGH----SAGVLRKIAEIRAHF-PNRTLIA-GNIATAEGARALYDAGVDVVKVG 176 (365)
T ss_dssp HHHTCSEEEECCSCTT----CHHHHHHHHHHHHHC-SSSCEEE-EEECSHHHHHHHHHTTCSEEEEC
T ss_pred HHcCCCEEEEECCccc----ccchhHHHHHHHhhC-CCcceee-cccccHHHHHHHHhcCCceEEee
Confidence 8999999999864442 223456777777665 3677775 99999999999999999998887
|
| >d1o5ka_ c.1.10.1 (A:) Dihydrodipicolinate synthase {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Aldolase family: Class I aldolase domain: Dihydrodipicolinate synthase species: Thermotoga maritima [TaxId: 2336]
Probab=94.23 E-value=0.044 Score=48.63 Aligned_cols=85 Identities=19% Similarity=0.345 Sum_probs=54.9
Q ss_pred HHcCCcEEEEcCCCccCCCCCcc-hHHHHHHHHHHcCCCceEEEecCCCCHHHHHH----HHHhCcCEEEecHHHHHHhh
Q 017781 239 VQAGAAGIIVSNHGARQLDYVPA-TIMALEEVVKATQGRIPVFLDGGVRRGTDVFK----ALALGASGIFIGRPVVYSLA 313 (366)
Q Consensus 239 ~~aGad~I~vs~~gg~~~~~~~~-~~~~l~~i~~~~~~~i~vi~~GGI~~~~dv~k----alalGAd~V~igr~~l~~l~ 313 (366)
.+.|+++|.+.++.|....-... ..+++..+.+...+++|||+.-|=.+..++++ |-.+|||+|++.-|+++.
T Consensus 32 ~~~Gv~Gi~v~GstGE~~~Ls~~Er~~~~~~~~~~~~~~~~vi~gv~~~st~~ai~~a~~A~~~Gad~v~v~pP~y~~-- 109 (295)
T d1o5ka_ 32 LENGVNALIVLGTTGESPTVNEDEREKLVSRTLEIVDGKIPVIVGAGTNSTEKTLKLVKQAEKLGANGVLVVTPYYNK-- 109 (295)
T ss_dssp HHTTCCEEEESSGGGTGGGCCHHHHHHHHHHHHHHHTTSSCEEEECCCSCHHHHHHHHHHHHHHTCSEEEEECCCSSC--
T ss_pred HHcCCCEEEECeeccchhhCCHHHHHHHhhhhccccccCCceEeecccccHHHHHHHHHHHHHcCCCEEEEeCCCCCC--
Confidence 56799999998766532211111 23445555666677899999888788777664 344799999999997653
Q ss_pred hcCHHHHHHHHHH
Q 017781 314 AEGEKGVRRVLEM 326 (366)
Q Consensus 314 ~~G~~gv~~~~~~ 326 (366)
..++++.++++.
T Consensus 110 -~s~~~i~~~~~~ 121 (295)
T d1o5ka_ 110 -PTQEGLYQHYKY 121 (295)
T ss_dssp -CCHHHHHHHHHH
T ss_pred -CCHHHHHHHHHH
Confidence 134444444433
|
| >d1km4a_ c.1.2.3 (A:) Orotidine 5'-monophosphate decarboxylase (OMP decarboxylase) {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Ribulose-phoshate binding barrel family: Decarboxylase domain: Orotidine 5'-monophosphate decarboxylase (OMP decarboxylase) species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]
Probab=94.21 E-value=0.051 Score=46.12 Aligned_cols=96 Identities=19% Similarity=0.162 Sum_probs=59.0
Q ss_pred HHHHHHHHHhcCCCEE--EEecc---CHHH-----HHcCCcEEEEcCCCccC---------------------CC-----
Q 017781 214 WKDVKWLQTITKLPIL--VKGVL---TAED-----VQAGAAGIIVSNHGARQ---------------------LD----- 257 (366)
Q Consensus 214 ~~~i~~lr~~~~~pv~--vK~v~---~~~d-----~~aGad~I~vs~~gg~~---------------------~~----- 257 (366)
.+.++++++..+.||+ .|..- +... .++|+|+++|+..+|.. ++
T Consensus 43 ~~~v~~l~~~~~~~i~~D~K~~DIg~t~~~~~~~~~~~gad~~TVh~~~g~~~i~~~~~~a~~~~~~~~~l~~~s~~~~~ 122 (212)
T d1km4a_ 43 MDIIAEFRKRFGCRIIADFAVADIPETNEKICRATFKAGADAIIVHGFPGADSVRACLNVAEEMGREVFLLTEMSHPGAE 122 (212)
T ss_dssp THHHHHHHHHHCCEEEEEEEECSCHHHHHHHHHHHHHTTCSEEEEESTTCHHHHHHHHHHHHHHTCEEEEECSCSSGGGG
T ss_pred HHHHHHHHHhcccceehhhhhhccccHHHHhHhhhccccccEEEEeccCChHHHHHHHHHHHhcCCccccchhhcchhhh
Confidence 4568888888888888 45442 2222 68899999999877631 00
Q ss_pred -----------------------CCcchHHHHHHHHHHcCCCceEEEecCCCCH-HHHHHHHHhCcCEEEecHHHHHH
Q 017781 258 -----------------------YVPATIMALEEVVKATQGRIPVFLDGGVRRG-TDVFKALALGASGIFIGRPVVYS 311 (366)
Q Consensus 258 -----------------------~~~~~~~~l~~i~~~~~~~i~vi~~GGI~~~-~dv~kalalGAd~V~igr~~l~~ 311 (366)
++....+.+..+++..+ +-.++.++||+.- .+...++ -|||.+.+||++..+
T Consensus 123 ~~~~~~~~~~~~~~~~~g~~g~v~~~~~~~~i~~ir~~~~-~~~~~vtpGI~~~g~~~~d~~-~~ad~iIvGR~I~~a 198 (212)
T d1km4a_ 123 MFIQGAADEIARMGVDLGVKNYVGPSTRPERLSRLREIIG-QDSFLISPGVGAQGGDPGETL-RFADAIIVGRSIYLA 198 (212)
T ss_dssp TTHHHHHHHHHHHHHHHTCCEEECCTTCHHHHHHHHHHHC-SSSEEEECCBSTTSBCHHHHT-TTCSEEEECHHHHTS
T ss_pred hhhhhHHHHHHHHHHHhCCccccccccCHHHHhhhhhccC-CceeEEcCccccCCCCHHHHH-hhCCEEEECchhccC
Confidence 01112233444444443 3447788999843 2333333 489999999998753
|
| >d1twda_ c.1.30.1 (A:) Copper homeostasis protein CutC {Shigella flexneri [TaxId: 623]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: CutC-like family: CutC-like domain: Copper homeostasis protein CutC species: Shigella flexneri [TaxId: 623]
Probab=94.21 E-value=0.22 Score=43.23 Aligned_cols=122 Identities=14% Similarity=0.194 Sum_probs=74.3
Q ss_pred eecCCHHHHHHHHHHHHHcCCCEEEEecCCCCCcchhHHHhhhcCCCCccccccccccccCCCccccchhhHHHhhhccC
Q 017781 130 YVYKDRNVVAQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLTLKNFQGLDLGKMDEANDSGLAAYVAGQID 209 (366)
Q Consensus 130 y~~~d~~~~~~~l~ra~~~G~~ai~vtvd~p~~g~r~~d~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d 209 (366)
|...+.+.+.+.++.++++|++.+++.+-.+ |
T Consensus 66 Ys~~E~~~M~~di~~~k~~G~dGvV~G~L~~------------------------------------------------d 97 (247)
T d1twda_ 66 YSDGEFAAILEDVRTVRELGFPGLVTGVLDV------------------------------------------------D 97 (247)
T ss_dssp CCHHHHHHHHHHHHHHHHTTCSEEEECCBCT------------------------------------------------T
T ss_pred CCHHHHHHHHHHHHHHHHcCCCeEEEEEECC------------------------------------------------C
Confidence 5445566788888899999999998754321 2
Q ss_pred CCCCHHHHHHHHHhc-CCCEEEEec----cCHHH-----HHcCCcEEEEcCCCccCCCCCcchHHHHHHHHHHcCCCceE
Q 017781 210 RSLSWKDVKWLQTIT-KLPILVKGV----LTAED-----VQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPV 279 (366)
Q Consensus 210 ~~~~~~~i~~lr~~~-~~pv~vK~v----~~~~d-----~~aGad~I~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~i~v 279 (366)
...+.+.++++.+.. +.|+.+=-. .++.+ .+.|++.|--|+... .....++.|.++.+... ..-|
T Consensus 98 g~iD~~~~~~L~~~a~~l~vTFHRAfD~~~d~~~al~~Li~lG~~rILTSGg~~----~a~~G~~~L~~L~~~a~-~~iI 172 (247)
T d1twda_ 98 GNVDMPRMEKIMAAAGPLAVTFHRAFDMCANPLYTLNNLAELGIARVLTSGQKS----DALQGLSKIMELIAHRD-APII 172 (247)
T ss_dssp SSBCHHHHHHHHHHHTTSEEEECGGGGGCSCHHHHHHHHHHHTCCEEEECTTSS----STTTTHHHHHHHHTSSS-CCEE
T ss_pred CCccHHHHHHHHHHhcccCeeeehhhhhhCCHHHHHHHHHhcCCCeEeccCCCC----chhHHHHHHHHHHHhcC-CcEE
Confidence 234555555555554 344433311 12222 778999997766332 12334556666655433 3348
Q ss_pred EEecCCCCHHHHHHHHHhCcCEEEec
Q 017781 280 FLDGGVRRGTDVFKALALGASGIFIG 305 (366)
Q Consensus 280 i~~GGI~~~~dv~kalalGAd~V~ig 305 (366)
++-|||+. ..+.+.+..|++.+-.+
T Consensus 173 m~GgGI~~-~Ni~~l~~~g~~e~H~s 197 (247)
T d1twda_ 173 MAGAGVRA-ENLHHFLDAGVLEVHSS 197 (247)
T ss_dssp EEESSCCT-TTHHHHHHHTCSEEEEC
T ss_pred EecCCCCH-HHHHHHHHcCCCEEEEC
Confidence 88889864 45666667899888754
|
| >d1eepa_ c.1.5.1 (A:) Inosine monophosphate dehydrogenase (IMPDH) {Lyme disease spirochete (Borrelia burgdorferi) [TaxId: 139]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Inosine monophosphate dehydrogenase (IMPDH) family: Inosine monophosphate dehydrogenase (IMPDH) domain: Inosine monophosphate dehydrogenase (IMPDH) species: Lyme disease spirochete (Borrelia burgdorferi) [TaxId: 139]
Probab=93.88 E-value=0.047 Score=50.92 Aligned_cols=61 Identities=11% Similarity=0.254 Sum_probs=48.2
Q ss_pred HHcCCcEEEEcCCCccCCCCCcchHHHHHHHHHHcCCCceEEEecCCCCHHHHHHHHHhCcCEEEec
Q 017781 239 VQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFIG 305 (366)
Q Consensus 239 ~~aGad~I~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~i~vi~~GGI~~~~dv~kalalGAd~V~ig 305 (366)
.++|+|.|+++...|+ .....+.+..+++.. .++|||+ |+|-|++-+...+..|||+|-+|
T Consensus 160 ~~aG~D~ivID~AhG~----s~~~~~~i~~ik~~~-~~v~vIa-GNV~T~e~a~~L~~~GaD~VkVG 220 (388)
T d1eepa_ 160 VKAHVDILVIDSAHGH----STRIIELIKKIKTKY-PNLDLIA-GNIVTKEAALDLISVGADCLKVG 220 (388)
T ss_dssp HHTTCSEEEECCSCCS----SHHHHHHHHHHHHHC-TTCEEEE-EEECSHHHHHHHHTTTCSEEEEC
T ss_pred Hhhccceeeeeccccc----hHHHHHHHHHHHHHC-CCCceee-ccccCHHHHHHHHhcCCCeeeec
Confidence 8899999999864443 223456777777665 3688877 88999999999999999999887
|
| >d1vrda1 c.1.5.1 (A:1-85,A:213-457) Inosine monophosphate dehydrogenase (IMPDH) {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Inosine monophosphate dehydrogenase (IMPDH) family: Inosine monophosphate dehydrogenase (IMPDH) domain: Inosine monophosphate dehydrogenase (IMPDH) species: Thermotoga maritima [TaxId: 2336]
Probab=93.75 E-value=0.12 Score=46.99 Aligned_cols=61 Identities=23% Similarity=0.332 Sum_probs=46.4
Q ss_pred HHcCCcEEEEcCCCccCCCCCcchHHHHHHHHHHcCCCceEEEecCCCCHHHHHHHHHhCcCEEEec
Q 017781 239 VQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFIG 305 (366)
Q Consensus 239 ~~aGad~I~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~i~vi~~GGI~~~~dv~kalalGAd~V~ig 305 (366)
.++|+|.++++...|+ .....+.+..+++..+ +++||+ |.+.+++-+.+.+..|||+|-+|
T Consensus 107 i~agvd~ivId~A~G~----~~~~~~~ik~ik~~~~-~~~via-GnV~t~~~a~~l~~~GaD~v~VG 167 (330)
T d1vrda1 107 VKAGVDVIVIDTAHGH----SRRVIETLEMIKADYP-DLPVVA-GNVATPEGTEALIKAGADAVKVG 167 (330)
T ss_dssp HHTTCSEEEECCSCCS----SHHHHHHHHHHHHHCT-TSCEEE-EEECSHHHHHHHHHTTCSEEEEC
T ss_pred HHCCCCEEEEecCCCC----chhHHHHHHHHHHhCC-CCCEEe-echhHHHHHHHHHHcCCCEEeec
Confidence 8899999998764442 2234567777776543 677776 88999999998889999999765
|
| >d1vhca_ c.1.10.1 (A:) Hypothetical protein HI0047 {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Aldolase family: Class I aldolase domain: Hypothetical protein HI0047 species: Haemophilus influenzae [TaxId: 727]
Probab=93.70 E-value=0.091 Score=44.77 Aligned_cols=77 Identities=21% Similarity=0.239 Sum_probs=55.8
Q ss_pred CHHHHHHHHHhc-CCCEEEEeccCHHH----HHcCCcEEEEcCCCccCCCCCcchHHHHHHHHHHcCCCceEEEecCCCC
Q 017781 213 SWKDVKWLQTIT-KLPILVKGVLTAED----VQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRR 287 (366)
Q Consensus 213 ~~~~i~~lr~~~-~~pv~vK~v~~~~d----~~aGad~I~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~i~vi~~GGI~~ 287 (366)
..+.|+.++++. ++-|.+..|.+.++ .++||++++- -+ ...+.+..+.+ . ++|++ =|+.|
T Consensus 52 a~~~I~~l~~~~p~~~vGaGTV~~~~~~~~a~~aGa~FivS-P~---------~~~~v~~~a~~-~--~i~~i--PGv~T 116 (212)
T d1vhca_ 52 AADAIRLLRANRPDFLIAAGTVLTAEQVVLAKSSGADFVVT-PG---------LNPKIVKLCQD-L--NFPIT--PGVNN 116 (212)
T ss_dssp HHHHHHHHHHHCTTCEEEEESCCSHHHHHHHHHHTCSEEEC-SS---------CCHHHHHHHHH-T--TCCEE--CEECS
T ss_pred HHHHHHHHHhcCCCceEeeeecccHHHHHHHHhhCCcEEEC-CC---------CCHHHHHHHHh-c--CCCcc--CCcCC
Confidence 457799998877 56666667889888 9999999962 21 12344443332 2 55555 57999
Q ss_pred HHHHHHHHHhCcCEEEe
Q 017781 288 GTDVFKALALGASGIFI 304 (366)
Q Consensus 288 ~~dv~kalalGAd~V~i 304 (366)
+.++.+|+.+||+.|=+
T Consensus 117 psEi~~A~~~G~~~vK~ 133 (212)
T d1vhca_ 117 PMAIEIALEMGISAVKF 133 (212)
T ss_dssp HHHHHHHHHTTCCEEEE
T ss_pred HHHHHHHHHCCCCEEEE
Confidence 99999999999998855
|
| >d1mxsa_ c.1.10.1 (A:) KDPG aldolase {Pseudomonas putida [TaxId: 303]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Aldolase family: Class I aldolase domain: KDPG aldolase species: Pseudomonas putida [TaxId: 303]
Probab=93.48 E-value=0.096 Score=44.74 Aligned_cols=90 Identities=16% Similarity=0.112 Sum_probs=62.1
Q ss_pred CCCCHHHHHHHHHhcCCCEEEEeccCHHH----HHcCCcEEEEcCCCccCCCCCcchHHHHHHHHHHcCCCceEEEecCC
Q 017781 210 RSLSWKDVKWLQTITKLPILVKGVLTAED----VQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGV 285 (366)
Q Consensus 210 ~~~~~~~i~~lr~~~~~pv~vK~v~~~~d----~~aGad~I~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~i~vi~~GGI 285 (366)
|.++.+.+++.++ .++| ++=|+.|+.| .++|++.+.+.-.+- .+| ...++.+..-+ .+++++.+|||
T Consensus 96 P~~~~~v~~~a~~-~~i~-~iPGv~TpsEi~~A~~~G~~~vKlFPA~~---~~g---~~~ikal~~p~-p~~~fiptGGV 166 (216)
T d1mxsa_ 96 PGITEDILEAGVD-SEIP-LLPGISTPSEIMMGYALGYRRFKLFPAEI---SGG---VAAIKAFGGPF-GDIRFCPTGGV 166 (216)
T ss_dssp SSCCHHHHHHHHH-CSSC-EECEECSHHHHHHHHTTTCCEEEETTHHH---HTH---HHHHHHHHTTT-TTCEEEEBSSC
T ss_pred CCCcHHHHHHHHh-cCCC-ccCCcCCHHHHHHHHHCCCCEEEeccccc---ccc---HHHHHHHhccc-ccCceeccCCC
Confidence 3455666776666 4666 4457888887 999999999864210 012 23444444334 37999999999
Q ss_pred CCHHHHHHHHHhCcCEEEecHHHH
Q 017781 286 RRGTDVFKALALGASGIFIGRPVV 309 (366)
Q Consensus 286 ~~~~dv~kalalGAd~V~igr~~l 309 (366)
. .+++...|++|+-+++.|+.++
T Consensus 167 ~-~~n~~~yl~~~~v~avggs~l~ 189 (216)
T d1mxsa_ 167 N-PANVRNYMALPNVMCVGTTWML 189 (216)
T ss_dssp C-TTTHHHHHHSTTBCCEEECTTS
T ss_pred C-HHHHHHHHhcCCeEEEEccccC
Confidence 6 5799999999988887776554
|
| >d1yxya1 c.1.2.5 (A:4-233) Putative N-acetylmannosamine-6-phosphate 2-epimerase NanE {Streptococcus pyogenes [TaxId: 1314]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Ribulose-phoshate binding barrel family: NanE-like domain: Putative N-acetylmannosamine-6-phosphate 2-epimerase NanE species: Streptococcus pyogenes [TaxId: 1314]
Probab=93.40 E-value=0.37 Score=40.32 Aligned_cols=88 Identities=17% Similarity=0.049 Sum_probs=55.0
Q ss_pred HHHHHHHHhcCCCEEEEec-----------cCHHH----HHcCCcEEEEcCCCccCCCCCcchHHHHHHHHHHcCCCceE
Q 017781 215 KDVKWLQTITKLPILVKGV-----------LTAED----VQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPV 279 (366)
Q Consensus 215 ~~i~~lr~~~~~pv~vK~v-----------~~~~d----~~aGad~I~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~i~v 279 (366)
+.++++|+..+.|+....- ...++ ..+|+|.+.+...-+... .....++.+..+.... .. +
T Consensus 56 ~~~~~ir~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gad~i~~~~~~~~~~-~~~~~~~~~~~~~~~~--~~-~ 131 (230)
T d1yxya1 56 RDIKEIQAITDLPIIGIIKKDYPPQEPFITATMTEVDQLAALNIAVIAMDCTKRDRH-DGLDIASFIRQVKEKY--PN-Q 131 (230)
T ss_dssp HHHHHHHTTCCSCEEEECBCCCTTSCCCBSCSHHHHHHHHTTTCSEEEEECCSSCCT-TCCCHHHHHHHHHHHC--TT-C
T ss_pred hhHHHHHhhhhcchhhhhcccCCcceeeechhHHHHHHHHhcCCCEEEEeccccccc-chhhHHHHHHHHHhcC--CC-c
Confidence 4556666666666544321 11122 788999998776433211 2233556666665544 22 3
Q ss_pred EEecCCCCHHHHHHHHHhCcCEEEecH
Q 017781 280 FLDGGVRRGTDVFKALALGASGIFIGR 306 (366)
Q Consensus 280 i~~GGI~~~~dv~kalalGAd~V~igr 306 (366)
+..+++.|.+++.++..+|||.+.++.
T Consensus 132 ~v~~~v~t~~~a~~a~~~Gad~i~~~~ 158 (230)
T d1yxya1 132 LLMADISTFDEGLVAHQAGIDFVGTTL 158 (230)
T ss_dssp EEEEECSSHHHHHHHHHTTCSEEECTT
T ss_pred eEecCCCCHHHHHHHHhcCCCEEEeec
Confidence 444579999999999999999998764
|
| >d1wbha1 c.1.10.1 (A:1-213) KDPG aldolase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Aldolase family: Class I aldolase domain: KDPG aldolase species: Escherichia coli [TaxId: 562]
Probab=93.08 E-value=0.1 Score=44.44 Aligned_cols=77 Identities=16% Similarity=0.201 Sum_probs=55.5
Q ss_pred CHHHHHHHHHhc-CCCEEEEeccCHHH----HHcCCcEEEEcCCCccCCCCCcchHHHHHHHHHHcCCCceEEEecCCCC
Q 017781 213 SWKDVKWLQTIT-KLPILVKGVLTAED----VQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRR 287 (366)
Q Consensus 213 ~~~~i~~lr~~~-~~pv~vK~v~~~~d----~~aGad~I~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~i~vi~~GGI~~ 287 (366)
..+.|+.++++. ++-|.+..+.+.++ .++|+++++--+ ...+++..+. .. .+|+| =|+.|
T Consensus 53 a~~~I~~l~~~~p~~~vGaGTV~~~~~~~~a~~aGa~FivSP~----------~~~~v~~~a~-~~--~i~~i--PGv~T 117 (213)
T d1wbha1 53 AVDAIRAIAKEVPEAIVGAGTVLNPQQLAEVTEAGAQFAISPG----------LTEPLLKAAT-EG--TIPLI--PGIST 117 (213)
T ss_dssp HHHHHHHHHHHCTTSEEEEESCCSHHHHHHHHHHTCSCEEESS----------CCHHHHHHHH-HS--SSCEE--EEESS
T ss_pred HHHHHHHHHHHCCCCeeeccccccHHHHHHHHHCCCcEEECCC----------CCHHHHHHHH-hc--CCCcc--CCcCC
Confidence 456799999987 56566667788887 999999996322 1233443333 22 56655 47999
Q ss_pred HHHHHHHHHhCcCEEEe
Q 017781 288 GTDVFKALALGASGIFI 304 (366)
Q Consensus 288 ~~dv~kalalGAd~V~i 304 (366)
+.++..|+.+||+.|=+
T Consensus 118 psEi~~A~~~G~~~vKl 134 (213)
T d1wbha1 118 VSELMLGMDYGLKEFKF 134 (213)
T ss_dssp HHHHHHHHHTTCCEEEE
T ss_pred HHHHHHHHHCCCCEEEe
Confidence 99999999999999854
|
| >d1xm3a_ c.1.31.1 (A:) Thiazole biosynthesis protein ThiG {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: ThiG-like family: ThiG-like domain: Thiazole biosynthesis protein ThiG species: Bacillus subtilis [TaxId: 1423]
Probab=92.65 E-value=0.17 Score=43.59 Aligned_cols=39 Identities=23% Similarity=0.553 Sum_probs=32.2
Q ss_pred CCCHHHHHHHHHhcCCCEEEE-eccCHHH----HHcCCcEEEEc
Q 017781 211 SLSWKDVKWLQTITKLPILVK-GVLTAED----VQAGAAGIIVS 249 (366)
Q Consensus 211 ~~~~~~i~~lr~~~~~pv~vK-~v~~~~d----~~aGad~I~vs 249 (366)
-.+...++.+++..++||||- |+.++.| .+.|+|+|-+-
T Consensus 163 l~n~~~l~~i~~~~~vPvIvDAGIG~pSdAa~AMElG~daVLvN 206 (251)
T d1xm3a_ 163 ILNPLNLSFIIEQAKVPVIVDAGIGSPKDAAYAMELGADGVLLN 206 (251)
T ss_dssp CSCHHHHHHHHHHCSSCBEEESCCCSHHHHHHHHHTTCSEEEES
T ss_pred cCChHHHHHHHhcCCccEEEecCCCCHHHHHHHHHccCCEEEec
Confidence 346778999999999999998 5567766 99999999763
|
| >d1y0ea_ c.1.2.5 (A:) Putative N-acetylmannosamine-6-phosphate 2-epimerase NanE {Staphylococcus aureus [TaxId: 1280]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Ribulose-phoshate binding barrel family: NanE-like domain: Putative N-acetylmannosamine-6-phosphate 2-epimerase NanE species: Staphylococcus aureus [TaxId: 1280]
Probab=92.03 E-value=1.3 Score=36.46 Aligned_cols=62 Identities=10% Similarity=-0.073 Sum_probs=40.5
Q ss_pred HHcCCcEEEEcCCCccCCCCCcchHHHHHHHHHHcCCCceEEEecCCCCHHHHHHHHHhCcCEEEec
Q 017781 239 VQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFIG 305 (366)
Q Consensus 239 ~~aGad~I~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~i~vi~~GGI~~~~dv~kalalGAd~V~ig 305 (366)
.++|+|.|.+...-. ........+.+..+.+.. ..++..+++.+..+..++.+.|+|++.++
T Consensus 85 ~~agad~v~~~~~~~--~~~~~~~~~~~~~~~~~~---~~~~v~~~~~t~~~a~~~~~~g~d~i~~~ 146 (222)
T d1y0ea_ 85 IESQCEVIALDATLQ--QRPKETLDELVSYIRTHA---PNVEIMADIATVEEAKNAARLGFDYIGTT 146 (222)
T ss_dssp HHHTCSEEEEECSCS--CCSSSCHHHHHHHHHHHC---TTSEEEEECSSHHHHHHHHHTTCSEEECT
T ss_pred HHcCCCEEEeecccc--ccccchHHHHHHHHHHhC---CceEEeecCCCHHHHHHHHHcCCCeEEEe
Confidence 678999998754321 111222334444444432 33455677999999999999999999875
|
| >d1ujpa_ c.1.2.4 (A:) Trp synthase alpha-subunit {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Ribulose-phoshate binding barrel family: Tryptophan biosynthesis enzymes domain: Trp synthase alpha-subunit species: Thermus thermophilus [TaxId: 274]
Probab=91.83 E-value=0.17 Score=44.66 Aligned_cols=61 Identities=25% Similarity=0.253 Sum_probs=40.5
Q ss_pred CHHHHHHHHHhcCCCEEEE-eccCHHH--HHcCCcEEEEcCCCccCCCCCcchHHHHHHHHHHc
Q 017781 213 SWKDVKWLQTITKLPILVK-GVLTAED--VQAGAAGIIVSNHGARQLDYVPATIMALEEVVKAT 273 (366)
Q Consensus 213 ~~~~i~~lr~~~~~pv~vK-~v~~~~d--~~aGad~I~vs~~gg~~~~~~~~~~~~l~~i~~~~ 273 (366)
.-+.++++|+.+++|+.+. |+.++++ .-.+||+++|..+-=+.+..+......+.++++.+
T Consensus 190 ~~~~i~~ik~~t~~Pv~vGFGIs~~e~v~~~~~ADGvIVGSAiV~~i~e~~~~~~~~~~i~~~l 253 (271)
T d1ujpa_ 190 VKDLVRRIKARTALPVAVGFGVSGKATAAQAAVADGVVVGSALVRALEEGRSLAPLLQEIRQGL 253 (271)
T ss_dssp CHHHHHHHHTTCCSCEEEESCCCSHHHHHHHTTSSEEEECHHHHHHHHTTCCHHHHHHHHHHHH
T ss_pred HHHHHHhhhccccCCeEEeCCCCCHHHHHHhCCCCEEEEcHHHHHHHHhCCCHHHHHHHHHHHH
Confidence 4567999999999999999 6778887 44699999995421111111223444566666655
|
| >d1hl2a_ c.1.10.1 (A:) N-acetylneuraminate lyase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Aldolase family: Class I aldolase domain: N-acetylneuraminate lyase species: Escherichia coli [TaxId: 562]
Probab=91.82 E-value=0.2 Score=44.16 Aligned_cols=85 Identities=16% Similarity=0.176 Sum_probs=54.1
Q ss_pred HHcCCcEEEEcCCCccCCCCCcc-hHHHHHHHHHHcCCCceEEEecCCCCHHHHHH----HHHhCcCEEEecHHHHHHhh
Q 017781 239 VQAGAAGIIVSNHGARQLDYVPA-TIMALEEVVKATQGRIPVFLDGGVRRGTDVFK----ALALGASGIFIGRPVVYSLA 313 (366)
Q Consensus 239 ~~aGad~I~vs~~gg~~~~~~~~-~~~~l~~i~~~~~~~i~vi~~GGI~~~~dv~k----alalGAd~V~igr~~l~~l~ 313 (366)
.+.|+++|.+.++.|....-... ..+.+..+++.+++++|+|+.-|=.+-.++++ |-.+|||++++-.|+.+.
T Consensus 33 ~~~Gv~gi~~~G~tGE~~~Ls~eEr~~l~~~~~~~~~~~~pvi~gv~~~s~~~~i~~a~~a~~~Gad~~~v~~p~~~~-- 110 (295)
T d1hl2a_ 33 IQQGIDGLYVGGSTGEAFVQSLSEREQVLEIVAEEAKGKIKLIAHVGCVSTAESQQLAASAKRYGFDAVSAVTPFYYP-- 110 (295)
T ss_dssp HHHTCSEEEESSGGGTGGGSCHHHHHHHHHHHHHHHTTTSEEEEECCCSSHHHHHHHHHHHHHHTCSEEEEECCCSSC--
T ss_pred HHcCCCEEEECeEccchhhCCHHHHHHHHhhhHHhhccccceeeccccchhhHHHHHHHHHHhcCCceeeeeeccccC--
Confidence 46799999998876643222222 23455556667777899988666666666553 334899999999987653
Q ss_pred hcCHHHHHHHHHH
Q 017781 314 AEGEKGVRRVLEM 326 (366)
Q Consensus 314 ~~G~~gv~~~~~~ 326 (366)
..++++.+.+..
T Consensus 111 -~~~~~~~~~~~~ 122 (295)
T d1hl2a_ 111 -FSFEEHCDHYRA 122 (295)
T ss_dssp -CCHHHHHHHHHH
T ss_pred -CChHHHHHHHHH
Confidence 234554444433
|
| >d1f74a_ c.1.10.1 (A:) N-acetylneuraminate lyase {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Aldolase family: Class I aldolase domain: N-acetylneuraminate lyase species: Haemophilus influenzae [TaxId: 727]
Probab=91.45 E-value=0.24 Score=43.62 Aligned_cols=83 Identities=11% Similarity=0.149 Sum_probs=52.6
Q ss_pred cCCcEEEEcCCCccCCCCCcc-hHHHHHHHHHHcCCCceEEEecCCCCHHHHHH----HHHhCcCEEEecHHHHHHhhhc
Q 017781 241 AGAAGIIVSNHGARQLDYVPA-TIMALEEVVKATQGRIPVFLDGGVRRGTDVFK----ALALGASGIFIGRPVVYSLAAE 315 (366)
Q Consensus 241 aGad~I~vs~~gg~~~~~~~~-~~~~l~~i~~~~~~~i~vi~~GGI~~~~dv~k----alalGAd~V~igr~~l~~l~~~ 315 (366)
.|+++|.+.++.|....-... ..+.+..+++..++++||++.-|=.+..|+++ |-.+|||++++..|+.+..
T Consensus 37 ~Gv~gi~v~GttGE~~~Ls~~Er~~l~~~~~~~~~~~~~vi~gv~~~s~~~~iela~~a~~~Gad~i~~~pP~~~~~--- 113 (293)
T d1f74a_ 37 MKVDGLYVGGSTGENFMLSTEEKKEIFRIAKDEAKDQIALIAQVGSVNLKEAVELGKYATELGYDCLSAVTPFYYKF--- 113 (293)
T ss_dssp SCCSEEEESSGGGTGGGSCHHHHHHHHHHHHHHHTTSSEEEEECCCSCHHHHHHHHHHHHHHTCSEEECCCCCSSCC---
T ss_pred CCCCEEEECccCcchhhCCHHHHhhhhheeeccccCccccccccccccHHHHHHHHHHHHHcCCCEeeccCcccccc---
Confidence 399999997765532211111 23455556666777899998666667777664 3348999999999987532
Q ss_pred CHHHHHHHHHH
Q 017781 316 GEKGVRRVLEM 326 (366)
Q Consensus 316 G~~gv~~~~~~ 326 (366)
.++++.+++..
T Consensus 114 s~~~~~~~~~~ 124 (293)
T d1f74a_ 114 SFPEIKHYYDT 124 (293)
T ss_dssp CHHHHHHHHHH
T ss_pred chHHHHHHHhc
Confidence 34444444433
|
| >d1jr1a1 c.1.5.1 (A:17-112,A:233-514) Inosine monophosphate dehydrogenase (IMPDH) {Chinese hamster (Cricetulus griseus) [TaxId: 10029]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Inosine monophosphate dehydrogenase (IMPDH) family: Inosine monophosphate dehydrogenase (IMPDH) domain: Inosine monophosphate dehydrogenase (IMPDH) species: Chinese hamster (Cricetulus griseus) [TaxId: 10029]
Probab=91.31 E-value=0.41 Score=44.07 Aligned_cols=61 Identities=13% Similarity=0.190 Sum_probs=46.1
Q ss_pred HHcCCcEEEEcCCCccCCCCCcchHHHHHHHHHHcCCCceEEEecCCCCHHHHHHHHHhCcCEEEec
Q 017781 239 VQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFIG 305 (366)
Q Consensus 239 ~~aGad~I~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~i~vi~~GGI~~~~dv~kalalGAd~V~ig 305 (366)
.++|+|.+++....|. .....+.+..+++.. .+++||+ |.+.|.+.+...+.+|||+|-+|
T Consensus 128 ~~agv~vi~id~a~g~----~~~~~~~i~~ik~~~-~~~~iIa-GnVaT~e~a~~L~~aGAD~VkVG 188 (378)
T d1jr1a1 128 ALAGVDVVVLDSSQGN----SIFQINMIKYMKEKY-PNLQVIG-GNVVTAAQAKNLIDAGVDALRVG 188 (378)
T ss_dssp HHHTCCEEEECCSSCC----SHHHHHHHHHHHHHS-TTCEEEE-EEECSHHHHHHHHHHTCSEEEEC
T ss_pred HhhccceEeeeccCcc----chhhHHHHHHHHHHC-CCCceee-cccccHHHHHHHHHhCCCEEeec
Confidence 8899999998764432 223445666666654 3677765 89999999999999999999777
|
| >d1wv2a_ c.1.31.1 (A:) Thiazole biosynthesis protein ThiG {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: ThiG-like family: ThiG-like domain: Thiazole biosynthesis protein ThiG species: Pseudomonas aeruginosa [TaxId: 287]
Probab=89.84 E-value=0.4 Score=41.33 Aligned_cols=36 Identities=28% Similarity=0.500 Sum_probs=30.4
Q ss_pred CHHHHHHHHHhcCCCEEEE-eccCHHH----HHcCCcEEEE
Q 017781 213 SWKDVKWLQTITKLPILVK-GVLTAED----VQAGAAGIIV 248 (366)
Q Consensus 213 ~~~~i~~lr~~~~~pv~vK-~v~~~~d----~~aGad~I~v 248 (366)
+...++.+++..++||++- |+.++.| .+.|+|+|-+
T Consensus 167 n~~~l~~i~~~~~vpvivdAGIg~psdaa~AMElG~dgVLv 207 (243)
T d1wv2a_ 167 NPYNLRIILEEAKVPVLVDAGVGTASDAAIAMELGCEAVLM 207 (243)
T ss_dssp CHHHHHHHHHHCSSCBEEESCCCSHHHHHHHHHHTCSEEEE
T ss_pred cHHHHHhccccCCcceEeecccCCHHHHHHHHHccCCEEEe
Confidence 5567888888889999998 5678887 9999999976
|
| >d1qo2a_ c.1.2.1 (A:) Phosphoribosylformimino-5-aminoimidazole carboxamide ribotite isomerase HisA {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Ribulose-phoshate binding barrel family: Histidine biosynthesis enzymes domain: Phosphoribosylformimino-5-aminoimidazole carboxamide ribotite isomerase HisA species: Thermotoga maritima [TaxId: 2336]
Probab=89.82 E-value=0.18 Score=43.39 Aligned_cols=68 Identities=18% Similarity=0.193 Sum_probs=45.7
Q ss_pred HHcCCcEEEEcCCCccCCCCCcchHHHHHHHHHHcCCCceEEEecCCCCHHHHHHHHHhCcCEEEecHHHHH
Q 017781 239 VQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFIGRPVVY 310 (366)
Q Consensus 239 ~~aGad~I~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~i~vi~~GGI~~~~dv~kalalGAd~V~igr~~l~ 310 (366)
.+.|+|.+.+-.-.+. ..+.+.....+..+. .. .+|+.+.|||++-+|+.+.+..||+-|.+++.++.
T Consensus 40 ~~~g~~~l~ivDLda~-~~~~~~~~~~~~~~~-~~--~~pl~~gGGI~s~~~~~~~~~~Ga~kVvi~s~~~~ 107 (241)
T d1qo2a_ 40 IEEGFTLIHVVDLSNA-IENSGENLPVLEKLS-EF--AEHIQIGGGIRSLDYAEKLRKLGYRRQIVSSKVLE 107 (241)
T ss_dssp HHTTCCCEEEEEHHHH-HHCCCTTHHHHHHGG-GG--GGGEEEESSCCSHHHHHHHHHTTCCEEEECHHHHH
T ss_pred HHCCCCEEEEEecccc-cccCCcchhheehhc-cc--ccchhhhhhhhhhhhhhhccccccceEecCccccc
Confidence 5668888875431110 001222333333333 33 47999999999999999999999999999997643
|
| >d1pvna1 c.1.5.1 (A:2-99,A:231-494) Inosine monophosphate dehydrogenase (IMPDH) {Tritrichomonas foetus [TaxId: 5724]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Inosine monophosphate dehydrogenase (IMPDH) family: Inosine monophosphate dehydrogenase (IMPDH) domain: Inosine monophosphate dehydrogenase (IMPDH) species: Tritrichomonas foetus [TaxId: 5724]
Probab=89.29 E-value=0.71 Score=42.10 Aligned_cols=62 Identities=19% Similarity=0.181 Sum_probs=47.8
Q ss_pred HHcCCcEEEEcCCCccCCCCCcchHHHHHHHHHHcCCCceEEEecCCCCHHHHHHHHHhCcCEEEec
Q 017781 239 VQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFIG 305 (366)
Q Consensus 239 ~~aGad~I~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~i~vi~~GGI~~~~dv~kalalGAd~V~ig 305 (366)
.++|+|.|++..+.|+. .-..+.+..+++.....+|||+ |.|.|++.+...+..|||+|-+|
T Consensus 119 ~~ag~d~i~IDvAhG~~----~~v~~~i~~ir~~~~~~~~IiA-GNVaT~e~~~~L~~aGaD~vkVG 180 (362)
T d1pvna1 119 VEAGADVLCIDSSDGFS----EWQKITIGWIREKYGDKVKVGA-GNIVDGEGFRYLADAGADFIKIG 180 (362)
T ss_dssp HHHTCSEEEECCSCCCB----HHHHHHHHHHHHHHGGGSCEEE-EEECSHHHHHHHHHHTCSEEEEC
T ss_pred hhcCceEEeechhccch----hHHHHHHHHHHHhhccceeeec-ccccCHHHHHHHHHhCCcEEEec
Confidence 88999999998655432 2244667777665544677765 89999999999999999999888
|
| >d2p10a1 c.1.12.9 (A:8-204) Uncharacterized protein Mll9387 {Mesorhizobium loti [TaxId: 381]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Phosphoenolpyruvate/pyruvate domain family: Mll9387-like domain: Uncharacterized protein Mll9387 species: Mesorhizobium loti [TaxId: 381]
Probab=88.84 E-value=0.55 Score=39.17 Aligned_cols=88 Identities=18% Similarity=0.131 Sum_probs=52.4
Q ss_pred HHHHHHHhc--CCCEEEEeccCHHH----HHcCCcEEEEcCCCc-----cCCCCCcc-----h---HHHHHHHHHHcCCC
Q 017781 216 DVKWLQTIT--KLPILVKGVLTAED----VQAGAAGIIVSNHGA-----RQLDYVPA-----T---IMALEEVVKATQGR 276 (366)
Q Consensus 216 ~i~~lr~~~--~~pv~vK~v~~~~d----~~aGad~I~vs~~gg-----~~~~~~~~-----~---~~~l~~i~~~~~~~ 276 (366)
..+.+|+.. +.||++=++.+.-. +++|+|+|.+++.|- .....+.. . ++...++...+ .+
T Consensus 8 ~~~~lr~~l~~~~~l~~~g~~d~lsAklae~aGfdai~~~~~g~~~s~g~~~~~g~l~~~d~~~~~~~~a~~i~~~v-~~ 86 (197)
T d2p10a1 8 LVDRFQKKIRAGEPIIGGGAGTGLSAKSEEAGDIDLIVIYNSGRYRMAGRGSLAGLLAYGNANQIVVDMAREVLPVV-RH 86 (197)
T ss_dssp HHHHHHHHHHTTCCEEEEEESSHHHHHHHHHTTCSEEEECHHHHHHHTTCCGGGGGBTEEEHHHHHHHHHHHHGGGC-SS
T ss_pred HHHHHHHHHhCCCCEEEcccccHHHHHHHHHcCCCEEEEecHHHHHHcCCcccccccChhHHHHHHHHHHHHHHHhc-cc
Confidence 355666644 67999999877655 999999999987441 11111111 1 22222332222 26
Q ss_pred ceEEEecC----CCCHHHHHHH-HHhCcCEEEe
Q 017781 277 IPVFLDGG----VRRGTDVFKA-LALGASGIFI 304 (366)
Q Consensus 277 i~vi~~GG----I~~~~dv~ka-lalGAd~V~i 304 (366)
+|||+|.+ ..+-...++- .++|+.+|++
T Consensus 87 iPviaD~dG~g~~~nv~rtv~~~~~aG~agI~~ 119 (197)
T d2p10a1 87 TPVLAGVNGTDPFMVMSTFLRELKEIGFAGVQN 119 (197)
T ss_dssp SCEEEEECTTCTTCCHHHHHHHHHHHTCCEEEE
T ss_pred CceEEecCCCCcchhHHHHHHHHHHcCCeEEec
Confidence 99999864 3333344444 4589999986
|
| >d1rvga_ c.1.10.2 (A:) Fructose-bisphosphate aldolase (FBP aldolase) {Thermus aquaticus [TaxId: 271]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Aldolase family: Class II FBP aldolase domain: Fructose-bisphosphate aldolase (FBP aldolase) species: Thermus aquaticus [TaxId: 271]
Probab=88.64 E-value=4.6 Score=35.52 Aligned_cols=101 Identities=25% Similarity=0.297 Sum_probs=68.6
Q ss_pred HHcCCcEEEEcC---CCccCCCCCc-chHHHHHHHHHHcCCCceEEEecCC----------------------CCHHHHH
Q 017781 239 VQAGAAGIIVSN---HGARQLDYVP-ATIMALEEVVKATQGRIPVFLDGGV----------------------RRGTDVF 292 (366)
Q Consensus 239 ~~aGad~I~vs~---~gg~~~~~~~-~~~~~l~~i~~~~~~~i~vi~~GGI----------------------~~~~dv~ 292 (366)
.+.|+|.+-++. ||-+.....| -.++.|.+|.+.+ ++|+..-||= -..+|+.
T Consensus 163 ~~TgvD~LAvaiGn~HG~Yk~~~~~~l~~~~l~~I~~~~--~~PLVlHGgS~vp~~~~~~~~~~g~~lhg~sG~~~e~i~ 240 (305)
T d1rvga_ 163 ERTGADYLAVAIGTSHGAYKGKGRPFIDHARLERIARLV--PAPLVLHGASAVPPELVERFRASGGEIGEAAGIHPEDIK 240 (305)
T ss_dssp HHHCCSEEEECSSCCSSSBCSSSSCCCCHHHHHHHHHHC--CSCEEECSCCCCCHHHHHHHHHTTCCCCSCBCCCHHHHH
T ss_pred HHhCccHhhhhhhhhhcccCCCCcccchHHHHHHHHhcc--CCCeeccCCccccHHHHhhhcccCcccCCCCCCCHHHHH
Confidence 567899999874 4432211112 4678999999988 7999988863 2478899
Q ss_pred HHHHhCcCEEEecHHHHHHhhh-------cC-----H-HHHHHHHHHHHHHHHHHHHHcCCC
Q 017781 293 KALALGASGIFIGRPVVYSLAA-------EG-----E-KGVRRVLEMLREEFELAMALSGCR 341 (366)
Q Consensus 293 kalalGAd~V~igr~~l~~l~~-------~G-----~-~gv~~~~~~l~~el~~~m~~~G~~ 341 (366)
+++..|..-|-+++-+..+... .. + .-.....+.+++-++..|+.+|..
T Consensus 241 ~ai~~GV~KiNi~T~l~~a~~~~~~~~l~~~~~~~d~~~~~~~~~~a~~~~v~~~i~~fgS~ 302 (305)
T d1rvga_ 241 KAISLGIAKINTDTDLRLAFTALIREALNKNPKEFDPRKYLGPAREAVKEVVKSRMELFGSV 302 (305)
T ss_dssp HHHHTTEEEEEECHHHHHHHHHHHHHHHHHCTTCCCTHHHHHHHHHHHHHHHHHHHHHHTCT
T ss_pred HHHHcCeEEEEeChHHHHHHHHHHHHHHHhCcCcCCHHHHHHHHHHHHHHHHHHHHHHhCCC
Confidence 9999999999999976543210 11 1 123344566777777778888764
|
| >d2mnra1 c.1.11.2 (A:133-359) Mandelate racemase {Pseudomonas putida [TaxId: 303]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Enolase C-terminal domain-like family: D-glucarate dehydratase-like domain: Mandelate racemase species: Pseudomonas putida [TaxId: 303]
Probab=88.58 E-value=2.7 Score=34.96 Aligned_cols=44 Identities=16% Similarity=0.222 Sum_probs=37.1
Q ss_pred chHHHHHHHHHHcCCCceEEEecCCCCHHHHHHHHHhC-cCEEEecH
Q 017781 261 ATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALG-ASGIFIGR 306 (366)
Q Consensus 261 ~~~~~l~~i~~~~~~~i~vi~~GGI~~~~dv~kalalG-Ad~V~igr 306 (366)
..++.+.++++.. .+||.++-.+.+..+..+++..| +|.+++.-
T Consensus 95 ~~~~~~~~l~~~~--~ipia~gE~~~~~~~~~~~~~~~~~d~~~~d~ 139 (227)
T d2mnra1 95 HDYEGHQRIQSKL--NVPVQMGENWLGPEEMFKALSIGACRLAMPDA 139 (227)
T ss_dssp TCHHHHHHHHHTC--SSCEEECTTCCSHHHHHHHHHTTCCSEECCBT
T ss_pred cchhhhHHHHHHc--CCccccCceeEeechhhhhHhcCceeeeeccc
Confidence 3567788888877 79999999999999999999998 57887764
|
| >d2chra1 c.1.11.2 (A:127-370) Chlormuconate cycloisomerase {Alcaligenes eutrophus [TaxId: 106590]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Enolase C-terminal domain-like family: D-glucarate dehydratase-like domain: Chlormuconate cycloisomerase species: Alcaligenes eutrophus [TaxId: 106590]
Probab=88.39 E-value=6.2 Score=33.01 Aligned_cols=46 Identities=11% Similarity=0.081 Sum_probs=39.6
Q ss_pred chHHHHHHHHHHcCCCceEEEecCCCCHHHHHHHHHhC-cCEEEecHHH
Q 017781 261 ATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALG-ASGIFIGRPV 308 (366)
Q Consensus 261 ~~~~~l~~i~~~~~~~i~vi~~GGI~~~~dv~kalalG-Ad~V~igr~~ 308 (366)
..++.+.++++.+ ++||+++--+.+..++...+..| +|.|++.-..
T Consensus 100 ~d~~~~~~l~~~~--~ipia~~E~~~~~~~~~~~i~~~~~d~v~~d~~~ 146 (244)
T d2chra1 100 ENTQALRRLSDNN--RVAIMADESLSTLASAFDLARDRSVDVFSLKLCN 146 (244)
T ss_dssp SCHHHHHHHHHHC--SSEEEESSSCCSHHHHHHHHTTTCCSEECCCHHH
T ss_pred ccchhhhhhccce--eeeeeecccccccchhhhhhhcceeEEEeecccc
Confidence 3577888898888 89999999999999999999987 7999988543
|
| >d1vc4a_ c.1.2.4 (A:) Indole-3-glycerophosphate synthase, IPGS {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Ribulose-phoshate binding barrel family: Tryptophan biosynthesis enzymes domain: Indole-3-glycerophosphate synthase, IPGS species: Thermus thermophilus [TaxId: 274]
Probab=87.84 E-value=1.1 Score=38.71 Aligned_cols=64 Identities=20% Similarity=0.226 Sum_probs=51.5
Q ss_pred HHcCCcEEEEcCCCccCCCCCcchHHHHHHHHHHcCCCceEEEecCCCCHHHHHHHHHhCcCEEEecHHH
Q 017781 239 VQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFIGRPV 308 (366)
Q Consensus 239 ~~aGad~I~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~i~vi~~GGI~~~~dv~kalalGAd~V~igr~~ 308 (366)
.+.||++|.|-.-.- +-...++.|..+++.+ ++||+.--=|.++.++.+|-++|||+|.+--.+
T Consensus 75 ~~~GA~aiSVLTe~~----~F~Gs~~dl~~v~~~~--~iPvLrKDFIid~~QI~ea~~~GADaVLLIaal 138 (254)
T d1vc4a_ 75 ARGGARAVSVLTEPH----RFGGSLLDLKRVREAV--DLPLLRKDFVVDPFMLEEARAFGASAALLIVAL 138 (254)
T ss_dssp HHTTCSEEEEECCCS----SSCCCHHHHHHHHHHC--CSCEEEESCCCSHHHHHHHHHTTCSEEEEEHHH
T ss_pred HhcCCceEEEEcCcc----cccccHHHHHHHHHHc--CCCcccCCccccHHHHHHHHhccchHHHHHHHH
Confidence 789999998865210 1113566778888887 899999999999999999999999999988654
|
| >d1oy0a_ c.1.12.8 (A:) Ketopantoate hydroxymethyltransferase PanB {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Phosphoenolpyruvate/pyruvate domain family: Ketopantoate hydroxymethyltransferase PanB domain: Ketopantoate hydroxymethyltransferase PanB species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=87.25 E-value=3.6 Score=35.45 Aligned_cols=33 Identities=18% Similarity=0.244 Sum_probs=25.7
Q ss_pred HHcCCcEEEEcCCCccCCCCCcchHHHHHHHHHHcCCCceEEEec
Q 017781 239 VQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDG 283 (366)
Q Consensus 239 ~~aGad~I~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~i~vi~~G 283 (366)
.++||.+|++-. -+.++..+|.+.+ ++|+|.-|
T Consensus 172 e~AGa~~ivlE~----------Vp~~la~~It~~~--~IPtIGIG 204 (262)
T d1oy0a_ 172 AEAGAFAVVMEM----------VPAELATQITGKL--TIPTVGIG 204 (262)
T ss_dssp HHHTCSEEEEES----------CCHHHHHHHHHHC--SSCEEEES
T ss_pred HhCCcEEEeccc----------ccHhHHHHHHhhC--CceEEEec
Confidence 789999998754 2445667888888 89999766
|
| >d1wa3a1 c.1.10.1 (A:2-203) KDPG aldolase {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Aldolase family: Class I aldolase domain: KDPG aldolase species: Thermotoga maritima [TaxId: 2336]
Probab=87.13 E-value=0.86 Score=38.05 Aligned_cols=78 Identities=23% Similarity=0.156 Sum_probs=53.3
Q ss_pred CHHHHHHHHHhc--CCCEEEEeccCHHH----HHcCCcEEEEcCCCccCCCCCcchHHHHHHHHHHcCCCceEEEecCCC
Q 017781 213 SWKDVKWLQTIT--KLPILVKGVLTAED----VQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVR 286 (366)
Q Consensus 213 ~~~~i~~lr~~~--~~pv~vK~v~~~~d----~~aGad~I~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~i~vi~~GGI~ 286 (366)
..+.|+.+++.. +.-|.+..+.+.++ .++|+++++ |-+ .+.+.+..+.+. .+|++ =|+.
T Consensus 47 a~~~i~~l~~~~~~~~~vGaGTV~~~~~~~~a~~aGa~fiv-sP~---------~~~~v~~~~~~~---~i~~i--PGv~ 111 (202)
T d1wa3a1 47 ADTVIKELSFLKEKGAIIGAGTVTSVEQCRKAVESGAEFIV-SPH---------LDEEISQFCKEK---GVFYM--PGVM 111 (202)
T ss_dssp HHHHHHHTHHHHHTTCEEEEESCCSHHHHHHHHHHTCSEEE-CSS---------CCHHHHHHHHHH---TCEEE--CEEC
T ss_pred HHHHHHHHHHhcCCCcEEEecccccHHHHHHHHhhcccEEe-CCC---------CcHHHHHHHHhc---CCcee--CCcC
Confidence 346678777543 34455556788887 999999996 221 123444444432 45554 5799
Q ss_pred CHHHHHHHHHhCcCEEEec
Q 017781 287 RGTDVFKALALGASGIFIG 305 (366)
Q Consensus 287 ~~~dv~kalalGAd~V~ig 305 (366)
|+.++.+|+.+||+.+-+-
T Consensus 112 TpsEi~~A~~~G~~~lK~f 130 (202)
T d1wa3a1 112 TPTELVKAMKLGHTILKLF 130 (202)
T ss_dssp SHHHHHHHHHTTCCEEEET
T ss_pred cHHHHHHHHHCCCCEEEec
Confidence 9999999999999999764
|
| >d1o66a_ c.1.12.8 (A:) Ketopantoate hydroxymethyltransferase PanB {Neisseria meningitidis [TaxId: 487]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Phosphoenolpyruvate/pyruvate domain family: Ketopantoate hydroxymethyltransferase PanB domain: Ketopantoate hydroxymethyltransferase PanB species: Neisseria meningitidis [TaxId: 487]
Probab=86.88 E-value=8.5 Score=32.94 Aligned_cols=33 Identities=21% Similarity=0.217 Sum_probs=25.6
Q ss_pred HHcCCcEEEEcCCCccCCCCCcchHHHHHHHHHHcCCCceEEEec
Q 017781 239 VQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDG 283 (366)
Q Consensus 239 ~~aGad~I~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~i~vi~~G 283 (366)
+++||-+|++-. -+-++..+|.+.+ ++|+|.-|
T Consensus 169 e~AGa~~ivlE~----------Vp~~va~~It~~~--~iptIgIG 201 (260)
T d1o66a_ 169 DDAGAAVVLMEC----------VLAELAKKVTETV--SCPTIGIG 201 (260)
T ss_dssp HHTTCSEEEEES----------CCHHHHHHHHHHC--SSCEEEES
T ss_pred HHhhhhehhhhh----------ccHHHHHHHHhhh--cceeeecc
Confidence 889999998754 2445667788888 89999766
|
| >d1ea0a2 c.1.4.1 (A:423-1193) Alpha subunit of glutamate synthase, central and FMN domains {Azospirillum brasilense [TaxId: 192]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: FMN-linked oxidoreductases family: FMN-linked oxidoreductases domain: Alpha subunit of glutamate synthase, central and FMN domains species: Azospirillum brasilense [TaxId: 192]
Probab=86.83 E-value=5.3 Score=39.51 Aligned_cols=144 Identities=11% Similarity=0.018 Sum_probs=94.9
Q ss_pred CCCCCHHHHHHHHHhcCCC-----EEEEecc---CHHH------------HHcCCcEEEEcCCCccCCCCCcchHHHHHH
Q 017781 209 DRSLSWKDVKWLQTITKLP-----ILVKGVL---TAED------------VQAGAAGIIVSNHGARQLDYVPATIMALEE 268 (366)
Q Consensus 209 d~~~~~~~i~~lr~~~~~p-----v~vK~v~---~~~d------------~~aGad~I~vs~~gg~~~~~~~~~~~~l~~ 268 (366)
.|-++.+.++.|++..+.+ +..+.-. +.++ .+.|+..|++|-.+-..-....|.+-++..
T Consensus 125 sPILs~~e~~~i~~~~~~~~~~id~~f~~~~g~~~L~~AL~~l~~eA~~AV~~G~~ilILSDr~~~~~~~~IP~LLAv~a 204 (771)
T d1ea0a2 125 SPVLTTAEFRAMRDYMGDTAAEIDATFPVDGGPEALRDALRRIRQETEDAVRGGATHVILTDEAMGPARAAIPAILATGA 204 (771)
T ss_dssp CSBCCHHHHHHHHHHHGGGEEEEECEEESTTCTTHHHHHHHHHHHHHHHHHHHTCCEEEEECTTCBTTEEECCHHHHHHH
T ss_pred CCccCHHHHHHHHccCCCCeEEEEEEEeCCCChHHHHHHHHHHHHHHHHHHhCCCcEEEEeccccccchhhhHHHHHHHH
Confidence 3556778888888654322 2222111 1222 889999999998653221223456656655
Q ss_pred HHHHc-----CCCceEE-EecCCCCHHHHHHHHHhCcCEEEecHHHH--HHhhhc-------CHHHHHHHHHHHHHHHHH
Q 017781 269 VVKAT-----QGRIPVF-LDGGVRRGTDVFKALALGASGIFIGRPVV--YSLAAE-------GEKGVRRVLEMLREEFEL 333 (366)
Q Consensus 269 i~~~~-----~~~i~vi-~~GGI~~~~dv~kalalGAd~V~igr~~l--~~l~~~-------G~~gv~~~~~~l~~el~~ 333 (366)
+...+ +.++.|| =+|-+|+.-+++-.+-.||++|.=.-++- ..+... -++.+.++...+.+.|..
T Consensus 205 VHh~Lir~gLR~~~sIIveSGeare~Hh~A~LiGyGA~AV~PYLa~e~i~~~~~~~~~~~~~~~~a~~ny~kAi~kGLlK 284 (771)
T d1ea0a2 205 VHTHLIRSNLRTFTSLNVRTAEGLDTHYFAVLIGVGATTVNAYLAQEAIAERHRRGLFGSMPLEKGMANYKKAIDDGLLK 284 (771)
T ss_dssp HHHHHHTTTCGGGCEEEEECSSCCSHHHHHHHHTTTCSEEECHHHHHHHHHHHTTTTTTTCCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCCccceeEEeehhhhhhhhhhheeeccccccChHHHHHHHHHHHhhhhccCCCHHHHHHHHHHHHHHHHHH
Confidence 55543 3356554 56779999999988889999996332221 111111 146788999999999999
Q ss_pred HHHHcCCCChhhhccccee
Q 017781 334 AMALSGCRSLKEITRDHIV 352 (366)
Q Consensus 334 ~m~~~G~~~l~el~~~~l~ 352 (366)
.|..+|.++++.-++..+.
T Consensus 285 IMSKMGIStl~SY~GaqiF 303 (771)
T d1ea0a2 285 IMSKMGISVISSYRGGGNF 303 (771)
T ss_dssp HHHTTTCCCHHHHTTSCCE
T ss_pred HHHHhchhhhhHHHHhhhh
Confidence 9999999999998877554
|
| >d1muca1 c.1.11.2 (A:131-372) Muconate-lactonizing enzyme {Pseudomonas putida [TaxId: 303]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Enolase C-terminal domain-like family: D-glucarate dehydratase-like domain: Muconate-lactonizing enzyme species: Pseudomonas putida [TaxId: 303]
Probab=86.74 E-value=7.6 Score=32.27 Aligned_cols=44 Identities=20% Similarity=0.157 Sum_probs=38.0
Q ss_pred chHHHHHHHHHHcCCCceEEEecCCCCHHHHHHHHHhC-cCEEEecH
Q 017781 261 ATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALG-ASGIFIGR 306 (366)
Q Consensus 261 ~~~~~l~~i~~~~~~~i~vi~~GGI~~~~dv~kalalG-Ad~V~igr 306 (366)
..++.+.++++.+ .+||.++-.+.+..|+.+++..| +|.+++--
T Consensus 100 ~d~~~~~~L~~~~--~~pIa~~E~~~~~~~~~~~i~~~~~d~~~~d~ 144 (242)
T d1muca1 100 INRGGQVRLNQRT--PAPIMADESIESVEDAFSLAADGAASIFALKI 144 (242)
T ss_dssp TCHHHHHHHHHHC--SSCEEESTTCSSHHHHHHHHHHTCCSEEEECH
T ss_pred hhhhhhhhhhhhh--hheeecccccccccchhhhhhccccccccccc
Confidence 3577788888887 79999999999999999999988 78888863
|
| >d1vhna_ c.1.4.1 (A:) Putative flavin oxidoreducatase TM0096 {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: FMN-linked oxidoreductases family: FMN-linked oxidoreductases domain: Putative flavin oxidoreducatase TM0096 species: Thermotoga maritima [TaxId: 2336]
Probab=85.46 E-value=0.71 Score=41.00 Aligned_cols=81 Identities=22% Similarity=0.412 Sum_probs=53.7
Q ss_pred CCceEEEeeecCCHHHHHHHHHHHHHcCCCEEEEecCCCCCcchhHHHhhhcCCCCccccccccccccCCCccccchhhH
Q 017781 122 PGIRFFQLYVYKDRNVVAQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLTLKNFQGLDLGKMDEANDSGLA 201 (366)
Q Consensus 122 ~~~~~~Qly~~~d~~~~~~~l~ra~~~G~~ai~vtvd~p~~g~r~~d~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~ 201 (366)
+.|..+.+-.+.|.+...+.++.++++|++.+.||--+.. .+
T Consensus 122 ~~pvsvK~RlG~d~~~~~~~~~~l~~~G~~~itvH~Rt~~---------q~----------------------------- 163 (305)
T d1vhna_ 122 SGKFSVKTRLGWEKNEVEEIYRILVEEGVDEVFIHTRTVV---------QS----------------------------- 163 (305)
T ss_dssp SSEEEEEEESCSSSCCHHHHHHHHHHTTCCEEEEESSCTT---------TT-----------------------------
T ss_pred ccccccccccCcccchhhHHHHHHHHhCCcEEEechhhhh---------hc-----------------------------
Confidence 4566666655555555667788888888888887632110 00
Q ss_pred HHhhhccCCCCCHHHHHHHHHhcCCCEEEEe-ccCHHH-----HHcCCcEEEE
Q 017781 202 AYVAGQIDRSLSWKDVKWLQTITKLPILVKG-VLTAED-----VQAGAAGIIV 248 (366)
Q Consensus 202 ~~~~~~~d~~~~~~~i~~lr~~~~~pv~vK~-v~~~~d-----~~aGad~I~v 248 (366)
..+...|+.|+.+++ ++||++=| +.+.+| .+.|+|+|-+
T Consensus 164 ------~~~~a~~~~i~~~~~--~ipvi~NGdI~s~~d~~~~l~~tg~dgVMi 208 (305)
T d1vhna_ 164 ------FTGRAEWKALSVLEK--RIPTFVSGDIFTPEDAKRALEESGCDGLLV 208 (305)
T ss_dssp ------TSSCCCGGGGGGSCC--SSCEEEESSCCSHHHHHHHHHHHCCSEEEE
T ss_pred ------cccchhhhHHHhhhh--hhhhhcccccccHHHHHHHHHhcCCCeEeh
Confidence 123347888887776 58988775 568887 5579999976
|
| >d1vr6a1 c.1.10.4 (A:1-338) 3-deoxy-D-arabino-heptulosonate-7-phosphate synthase (DAHP synthase, AroG) {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Aldolase family: Class I DAHP synthetase domain: 3-deoxy-D-arabino-heptulosonate-7-phosphate synthase (DAHP synthase, AroG) species: Thermotoga maritima [TaxId: 2336]
Probab=85.41 E-value=1.8 Score=38.95 Aligned_cols=263 Identities=19% Similarity=0.212 Sum_probs=136.1
Q ss_pred cCCccchhhH-HHhHhcccceeeeccccCC-------CCCCccceeEcCccc---CCceEecccccccccCChhhHHHHH
Q 017781 27 ASGAEDQWTL-QENRNAFSRILFRPRILID-------VSKIDMNTTVLGFKI---SMPIMIAPTAMQKMAHPEGEYATAR 95 (366)
Q Consensus 27 ~~ga~~~~t~-~~N~~~f~~i~l~pr~l~~-------~~~vd~st~l~g~~l---~~Pi~iApm~~~~l~~~~~e~~la~ 95 (366)
-|..||+..+ ....++|..+.=+-|+..+ ...-|+.+++.|.++ ...+|-.|...-+ .+--..+|+
T Consensus 39 ig~iGd~~~~~~~~~~~l~~Ve~v~~i~~pykl~SR~~~~~~t~I~v~gv~iG~~~l~lIAGPC~vES---~e~~~~~A~ 115 (338)
T d1vr6a1 39 IGIIGDDRYVVADKFESLDCVESVVRVLKPYKLVSREFHPEDTVIDLGDVKIGNGYFTIIAGPCSVEG---REMLMETAH 115 (338)
T ss_dssp EEEEEEESSCCHHHHHTSTTEEEEEECSCSCCTTBTTTCCSCCCEECSSCEESTTEEEEEEECSBCCC---HHHHHHHHH
T ss_pred EEEECCccccCHHHHhcCCcceEEEecCCchhhhhCccCCCCceEEeCCEEECCCceEEEecCCCCCC---HHHHHHHHH
Confidence 4555555544 3345667666555454432 233455555555444 2456666654322 222358899
Q ss_pred HHHHcCCceecCC-CCCCCHHHHhccCCCceEEEeeecCCHHHHHHHHHHHHH-cCCCEEEEecCCCCCcchhHHHhhhc
Q 017781 96 AASAAGTIMTLSS-WSTSSVEEVASTGPGIRFFQLYVYKDRNVVAQLVRRAER-AGFKAIALTVDTPRLGRREADIKNRF 173 (366)
Q Consensus 96 aa~~~G~~~~vs~-~~~~~~e~i~~~~~~~~~~Qly~~~d~~~~~~~l~ra~~-~G~~ai~vtvd~p~~g~r~~d~~~~~ 173 (366)
.+++.|..+..+. +-+ .. .++.||-. . +.-.++++++++ .|...+ ..+-.+ +.-+....+
T Consensus 116 ~lke~g~~~~r~g~fKp-------Rt--sp~sf~g~---g-~~gL~~l~~~k~~~glpvv-TdV~~~----~~~~~~~e~ 177 (338)
T d1vr6a1 116 FLSELGVKVLRGGAYKP-------RT--SPYSFQGL---G-EKGLEYLREAADKYGMYVV-TEALGE----DDLPKVAEY 177 (338)
T ss_dssp HHHHTTCCEEECBSCCC-------CC--STTSCCCC---T-HHHHHHHHHHHHHHTCEEE-EECSSG----GGHHHHHHH
T ss_pred HHHHhCccccccceecc-------cc--cccccccc---h-HHHHHHHHHHHhhcCceeE-Eeccch----hhhhhhhce
Confidence 9999988877642 221 11 23445521 2 333456666654 565432 222111 111111000
Q ss_pred CCCCccccccccccccCCCccccchhhHHHhhhccCCCCCHHHHHHHHHhcCCCEEEEec--cCHHH--------HHcCC
Q 017781 174 TLPPFLTLKNFQGLDLGKMDEANDSGLAAYVAGQIDRSLSWKDVKWLQTITKLPILVKGV--LTAED--------VQAGA 243 (366)
Q Consensus 174 ~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~i~~lr~~~~~pv~vK~v--~~~~d--------~~aGa 243 (366)
.++.. ...+.+ ...+.++++-+ ++.||.+|-. .++++ ...|-
T Consensus 178 -----------~DilQ----------I~A~~~------~n~~LL~~~g~-t~kpV~lKkG~~~s~~e~l~aae~i~~~Gn 229 (338)
T d1vr6a1 178 -----------ADIIQ----------IGARNA------QNFRLLSKAGS-YNKPVLLKRGFMNTIEEFLLSAEYIANSGN 229 (338)
T ss_dssp -----------CSEEE----------ECGGGT------TCHHHHHHHHT-TCSCEEEECCTTCCHHHHHHHHHHHHHTTC
T ss_pred -----------eeeEE----------echhhc------cCHHHHHHhhc-cCCcEEecCccccchhhhhhhHHHHHhcCC
Confidence 00000 000111 13455666655 5899999954 57776 67888
Q ss_pred cEEEEcCCCccCCCC-C--cchHHHHHHHHHHcCCCceEEEe----cCCCCHHH--HHHHHHhCcCEEEecHHHH-HHhh
Q 017781 244 AGIIVSNHGARQLDY-V--PATIMALEEVVKATQGRIPVFLD----GGVRRGTD--VFKALALGASGIFIGRPVV-YSLA 313 (366)
Q Consensus 244 d~I~vs~~gg~~~~~-~--~~~~~~l~~i~~~~~~~i~vi~~----GGI~~~~d--v~kalalGAd~V~igr~~l-~~l~ 313 (366)
+-|++.-+|-+.... . ...+..++.+++.. ..|||+| ||-+..-- +..|+++|||++++=...= ....
T Consensus 230 ~~vilcERG~~t~~~~~~~~lD~~~i~~~k~~~--~lPVi~DpsHs~G~r~~v~~larAAvA~GadGl~iE~Hp~P~~Al 307 (338)
T d1vr6a1 230 TKIILCERGIRTFEKATRNTLDISAVPIIRKES--HLPILVDPSHSGGRRDLVIPLSRAAIAVGAHGIIVEVHPEPEKAL 307 (338)
T ss_dssp CCEEEEECCBCCSCCSSSSBCCTTHHHHHHHHB--SSCEEECHHHHHCSGGGHHHHHHHHHHHTCSEEEEEBCSCGGGCS
T ss_pred ccceeeeccccccccccccchhhcccceeeccc--cCceeeCCCCCCCchhHHHHHHHHHHHhCCCEEEEEeCCCcccCC
Confidence 888887666332211 1 22455666666554 6899986 66665532 3467889999999986210 0001
Q ss_pred hcCHHHH-HHHHHHHHHHHHHHHHHcCC
Q 017781 314 AEGEKGV-RRVLEMLREEFELAMALSGC 340 (366)
Q Consensus 314 ~~G~~gv-~~~~~~l~~el~~~m~~~G~ 340 (366)
++|+..+ -+.++.|.++++..-...|.
T Consensus 308 sDg~q~l~~~~~~~ll~~l~~i~~~vg~ 335 (338)
T d1vr6a1 308 SDGKQSLDFELFKELVQEMKKLADALGV 335 (338)
T ss_dssp SCGGGCBCHHHHHHHHHHHHHHHHHHTC
T ss_pred CCccccCCHHHHHHHHHHHHHHHHHhcc
Confidence 2343221 12455666777776666653
|
| >d1geha1 c.1.14.1 (A:137-443) Ribulose 1,5-bisphosphate carboxylase-oxygenase {Archaeon Thermococcus kodakaraensis [TaxId: 311400]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: RuBisCo, C-terminal domain family: RuBisCo, large subunit, C-terminal domain domain: Ribulose 1,5-bisphosphate carboxylase-oxygenase species: Archaeon Thermococcus kodakaraensis [TaxId: 311400]
Probab=84.58 E-value=10 Score=33.23 Aligned_cols=66 Identities=18% Similarity=0.027 Sum_probs=43.5
Q ss_pred HHHHHHHHHcCCceec-----CCCCCCCHHHHhc-----------cCC--CceEEEeeecCCHHHHHHHHHHHHHcCCCE
Q 017781 91 YATARAASAAGTIMTL-----SSWSTSSVEEVAS-----------TGP--GIRFFQLYVYKDRNVVAQLVRRAERAGFKA 152 (366)
Q Consensus 91 ~~la~aa~~~G~~~~v-----s~~~~~~~e~i~~-----------~~~--~~~~~Qly~~~d~~~~~~~l~ra~~~G~~a 152 (366)
..++.....-|+-++= .+...++.+|..+ ... .-+.+++ ..+.+.+.+..++++++|+++
T Consensus 38 a~~~~~~~~GGvD~IKDDe~la~~~~~p~~eRv~~~~~a~~~a~~~TG~~~lYa~Ni--T~~~~em~~ra~~a~~~G~~~ 115 (307)
T d1geha1 38 EKLAYDLLSNGADYMKDDENLTSPWYNRFEERAEIMAKIIDKVENETGEKKTWFANI--TADLLEMEQRLEVLADLGLKH 115 (307)
T ss_dssp HHHHHHHHHTTCCEEECCTTCCCCTTSCHHHHHHHHHHHHHHHHHHTCSCCEEECBC--CSSHHHHHHHHHHHHHHTCCE
T ss_pred HHHHHHHHhcCCCeeeCCccccCCCCCcHHHHHHHHHHHHHHHHHHhCCeeEEEEEc--cCChHHHHHHHHHHHHcCCCE
Confidence 4677777788888764 3344456665431 112 2234443 467788888888899999999
Q ss_pred EEEecC
Q 017781 153 IALTVD 158 (366)
Q Consensus 153 i~vtvd 158 (366)
+.|++.
T Consensus 116 vmi~~~ 121 (307)
T d1geha1 116 AMVDVV 121 (307)
T ss_dssp EEEEHH
T ss_pred EEEecc
Confidence 998764
|
| >d1dbta_ c.1.2.3 (A:) Orotidine 5'-monophosphate decarboxylase (OMP decarboxylase) {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Ribulose-phoshate binding barrel family: Decarboxylase domain: Orotidine 5'-monophosphate decarboxylase (OMP decarboxylase) species: Bacillus subtilis [TaxId: 1423]
Probab=83.87 E-value=0.82 Score=38.92 Aligned_cols=74 Identities=24% Similarity=0.381 Sum_probs=46.4
Q ss_pred HHcCCcEEEEcCCCccCCCCCcchHHHHHHHHHHcCCCceEEEecCCCCHHH----------HHHHHHhCcCEEEecHHH
Q 017781 239 VQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTD----------VFKALALGASGIFIGRPV 308 (366)
Q Consensus 239 ~~aGad~I~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~i~vi~~GGI~~~~d----------v~kalalGAd~V~igr~~ 308 (366)
.+.|+++++.+.+ .+..+++... .-.++++.||+-..+ ..+|+..|||.+.|||++
T Consensus 152 ~~~g~~g~v~s~~-------------~~~~~r~~~~-~~~~ivtPGI~~~~~~~~dq~r~~tp~~a~~~GaD~iIVGR~I 217 (237)
T d1dbta_ 152 EESGLDGVVCSVH-------------EAKAIYQAVS-PSFLTVTPGIRMSEDAANDQVRVATPAIAREKGSSAIVVGRSI 217 (237)
T ss_dssp HHTTCSEEECCGG-------------GHHHHTTTSC-TTCEEEECCBCCTTSCCTTCSSCBCHHHHHHTTCSEEEECHHH
T ss_pred hhcCcceeecchh-------------hhhhhccccc-cceeEeccccccCCCCCCCceeeCCHHHHHHcCCCEEEECCcc
Confidence 5678888876432 1233333332 344778888876432 467888999999999999
Q ss_pred HHHhhhcCHHHHHHHHHHHHHHHH
Q 017781 309 VYSLAAEGEKGVRRVLEMLREEFE 332 (366)
Q Consensus 309 l~~l~~~G~~gv~~~~~~l~~el~ 332 (366)
+.+ .-+ .+.++.+++|++
T Consensus 218 ~~s---~dP---~~aa~~i~~~ie 235 (237)
T d1dbta_ 218 TKA---EDP---VKAYKAVRLEWE 235 (237)
T ss_dssp HTS---SCH---HHHHHHHHHHHH
T ss_pred cCC---CCH---HHHHHHHHHHHc
Confidence 753 122 244556666654
|
| >d1to3a_ c.1.10.1 (A:) Putative aldolase YihT {Salmonella typhimurium [TaxId: 90371]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Aldolase family: Class I aldolase domain: Putative aldolase YihT species: Salmonella typhimurium [TaxId: 90371]
Probab=83.40 E-value=2.7 Score=36.60 Aligned_cols=86 Identities=23% Similarity=0.214 Sum_probs=50.0
Q ss_pred HHhcCCCEEEEecc---------CHHH---------HHcCCcEEEEcCCCccCCCCCcchHHHHHHHHHHcCCCce-EEE
Q 017781 221 QTITKLPILVKGVL---------TAED---------VQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIP-VFL 281 (366)
Q Consensus 221 r~~~~~pv~vK~v~---------~~~d---------~~aGad~I~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~i~-vi~ 281 (366)
.+.+++|+++=.+. +.++ .+.|+|.+.+---|- .....-.......++.... .+| |+.
T Consensus 149 c~~~glp~llE~l~~~~~~~~~~~~~~~i~~a~r~~~e~GaDi~K~~~p~~-~~~~~~~~~~~~~~~~~~~--~~p~vvL 225 (291)
T d1to3a_ 149 CHSNGLLSIIEPVVRPPRCGDKFDREQAIIDAAKELGDSGADLYKVEMPLY-GKGARSDLLTASQRLNGHI--NMPWVIL 225 (291)
T ss_dssp HHTTTCEEEEEEEECCCSSCSCCCHHHHHHHHHHHHTTSSCSEEEECCGGG-GCSCHHHHHHHHHHHHHTC--CSCEEEC
T ss_pred HHHcCCcceEEEEecCCCcccccchHHHHHHHHHHHHhcCCcEEEEecCCC-chhhhHHHHHHHHHHhhcC--CCcEEEE
Confidence 34568998886441 1111 789999988732110 0000111223344444443 678 777
Q ss_pred ecCCCCHHHHHH----HHHhCcCEEEecHHHHH
Q 017781 282 DGGVRRGTDVFK----ALALGASGIFIGRPVVY 310 (366)
Q Consensus 282 ~GGI~~~~dv~k----alalGAd~V~igr~~l~ 310 (366)
+||. +.+++.+ |+..||.++.+||.+-+
T Consensus 226 s~G~-~~~~f~~~l~~A~~aGa~G~~~GR~iw~ 257 (291)
T d1to3a_ 226 SSGV-DEKLFPRAVRVAMEAGASGFLAGRAVWS 257 (291)
T ss_dssp CTTS-CTTTHHHHHHHHHHTTCCEEEESHHHHG
T ss_pred eCCC-CHHHHHHHHHHHHHCCCeEEEeChhhhh
Confidence 7776 5566665 44479999999998744
|
| >d1nu5a1 c.1.11.2 (A:127-369) Chlormuconate cycloisomerase {Pseudomonas sp. p51 [TaxId: 65067]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Enolase C-terminal domain-like family: D-glucarate dehydratase-like domain: Chlormuconate cycloisomerase species: Pseudomonas sp. p51 [TaxId: 65067]
Probab=83.30 E-value=11 Score=31.20 Aligned_cols=44 Identities=9% Similarity=0.106 Sum_probs=38.7
Q ss_pred hHHHHHHHHHHcCCCceEEEecCCCCHHHHHHHHHhC-cCEEEecHH
Q 017781 262 TIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALG-ASGIFIGRP 307 (366)
Q Consensus 262 ~~~~l~~i~~~~~~~i~vi~~GGI~~~~dv~kalalG-Ad~V~igr~ 307 (366)
.++.+.++++.. ++||..+--+.+..|....+..| +|.+++--.
T Consensus 101 ~~~~~~~l~~~~--~ipIa~gE~~~~~~~~~~~i~~~~~d~~~~d~~ 145 (243)
T d1nu5a1 101 NFGALRRLTEQN--GVAILADESLSSLSSAFELARDHAVDAFSLKLC 145 (243)
T ss_dssp CHHHHHHHHHHC--SSEEEESTTCCSHHHHHHHHHTTCCSEEEECHH
T ss_pred cccccccchhcc--ccccccccccccchhhhhccccccccccccccc
Confidence 567788888887 79999999999999999999998 689988854
|
| >d1tzza1 c.1.11.2 (A:1146-1392) Hypothetical protein Bll6730 {Bradyrhizobium japonicum [TaxId: 375]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Enolase C-terminal domain-like family: D-glucarate dehydratase-like domain: Hypothetical protein Bll6730 species: Bradyrhizobium japonicum [TaxId: 375]
Probab=83.04 E-value=5.6 Score=33.29 Aligned_cols=42 Identities=10% Similarity=0.011 Sum_probs=34.9
Q ss_pred hHHHHHHHHHHcCCCceEEEecCCCCHHHHHHHHHhCc-----CEEEec
Q 017781 262 TIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGA-----SGIFIG 305 (366)
Q Consensus 262 ~~~~l~~i~~~~~~~i~vi~~GGI~~~~dv~kalalGA-----d~V~ig 305 (366)
.++.+.++++.. .+||.++-.+.+..|....+..|| |.+++.
T Consensus 104 d~~~~~~l~~~~--~ipia~gE~~~~~~~~~~~i~~~a~~~~~Di~~~d 150 (247)
T d1tzza1 104 DYALQAALAEFY--PGPMATGENLFSHQDARNLLRYGGMRPDRDWLQFD 150 (247)
T ss_dssp CHHHHHHHTTTC--CSCEEECTTCCSHHHHHHHHHHSCCCTTTCEECCC
T ss_pred cchhhhhhhhcc--ccccccchhhhhhHHHHHHHHccCCcCcceeEeec
Confidence 466777777666 799999999999999999999987 678775
|
| >d1wufa1 c.1.11.2 (A:1127-1370) N-acylamino acid racemase {Listeria innocua [TaxId: 1642]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Enolase C-terminal domain-like family: D-glucarate dehydratase-like domain: N-acylamino acid racemase species: Listeria innocua [TaxId: 1642]
Probab=82.77 E-value=7.1 Score=32.46 Aligned_cols=42 Identities=21% Similarity=0.275 Sum_probs=36.1
Q ss_pred hHHHHHHHHHHcCCCceEEEecCCCCHHHHHHHHHhC-cCEEEec
Q 017781 262 TIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALG-ASGIFIG 305 (366)
Q Consensus 262 ~~~~l~~i~~~~~~~i~vi~~GGI~~~~dv~kalalG-Ad~V~ig 305 (366)
.++.+.++++.. ++||+++-.+.+..|+.+++..| +|.+++-
T Consensus 95 d~~~~~~l~~~~--~~pia~dE~~~~~~~~~~~i~~~a~d~v~~d 137 (244)
T d1wufa1 95 DFVDHAWLQKQL--KTRICLDENIRSVKDVEQAHSIGSCRAINLK 137 (244)
T ss_dssp CSHHHHHHHTTC--SSEEEECTTCCSHHHHHHHHHHTCCSEEEEC
T ss_pred chhhhhcccccc--ccccccCccccchhhhhhhccccccceeecc
Confidence 456777787776 79999999999999999999998 5999875
|
| >d2cu0a1 c.1.5.1 (A:3-96,A:207-480) Inosine monophosphate dehydrogenase (IMPDH) {Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Inosine monophosphate dehydrogenase (IMPDH) family: Inosine monophosphate dehydrogenase (IMPDH) domain: Inosine monophosphate dehydrogenase (IMPDH) species: Pyrococcus horikoshii [TaxId: 53953]
Probab=82.67 E-value=0.58 Score=42.84 Aligned_cols=58 Identities=21% Similarity=0.261 Sum_probs=43.4
Q ss_pred HHcCCcEEEEcCCCccCCCCCcchHHHHHHHHHHcCCCceEEEecCCCCHHHHHHHHHhCcCEEEec
Q 017781 239 VQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFIG 305 (366)
Q Consensus 239 ~~aGad~I~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~i~vi~~GGI~~~~dv~kalalGAd~V~ig 305 (366)
.++|+|.|+++...|+. .-..+.++++++.+ ++|||+ |+|.|++-+. .+ .|||+|-+|
T Consensus 125 ~~aGvd~ivID~A~Gh~----~~~i~~lK~ir~~~--~~~vIa-GNVaT~e~~~-~l-~gaD~VkVG 182 (368)
T d2cu0a1 125 DKAGVDVIVVDTAHAHN----LKAIKSMKEMRQKV--DADFIV-GNIANPKAVD-DL-TFADAVKVG 182 (368)
T ss_dssp HHTTCSEEEEECSCCCC----HHHHHHHHHHHHTC--CSEEEE-EEECCHHHHT-TC-TTSSEEEEC
T ss_pred HHcCCCEEEecCcccch----hhhhhhhhhhhhhc--ccceee-ccccCHHHHH-hh-hcCcceeec
Confidence 67899999988754432 23456778887766 688887 9999998764 33 599999888
|
| >d1muma_ c.1.12.7 (A:) 2-methylisocitrate lyase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Phosphoenolpyruvate/pyruvate domain family: Phosphoenolpyruvate mutase/Isocitrate lyase-like domain: 2-methylisocitrate lyase species: Escherichia coli [TaxId: 562]
Probab=82.24 E-value=14 Score=31.98 Aligned_cols=64 Identities=13% Similarity=0.013 Sum_probs=42.1
Q ss_pred HHcCCcEEEEcCCCccCCCCCcchHHHHHHHHHHcCCCceE-EEecCCCCHHHHHHHHHhCcCEEEecHHHHHH
Q 017781 239 VQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPV-FLDGGVRRGTDVFKALALGASGIFIGRPVVYS 311 (366)
Q Consensus 239 ~~aGad~I~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~i~v-i~~GGI~~~~dv~kalalGAd~V~igr~~l~~ 311 (366)
.++|||+|.+.+ +.+.+.+.++++.++..+++ +..||-..--+.-+.-.+|.+.|..+...+++
T Consensus 176 ~eAGAD~vf~~~---------~~~~~~~~~~~~~~~~Pl~~~~~~~~~~p~~s~~eL~~~Gv~~v~~~~~~~~a 240 (289)
T d1muma_ 176 VEAGAEMLFPEA---------ITELAMYRQFADAVQVPILANITEFGATPLFTTDELRSAHVAMALYPLSAFRA 240 (289)
T ss_dssp HHTTCSEEEETT---------CCCHHHHHHHHHHHCSCBEEECCSSSSSCCCCHHHHHHTTCSEEEESSHHHHH
T ss_pred hhcCCcEEEecC---------CCCHHHHHHHHHhcCCCEEEeecCcCCCccchHHHHHHhccceEEechHHHHH
Confidence 999999998733 34567788888887433332 33344332223445667999999998776664
|
| >d1xhfa1 c.23.1.1 (A:2-122) Aerobic respiration control protein ArcA, N-terminal domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Flavodoxin-like superfamily: CheY-like family: CheY-related domain: Aerobic respiration control protein ArcA, N-terminal domain species: Escherichia coli [TaxId: 562]
Probab=82.15 E-value=6.1 Score=29.20 Aligned_cols=83 Identities=12% Similarity=0.135 Sum_probs=55.7
Q ss_pred HHHHHHHhcCCCEEEEeccCHHH-----HHcCCcEEEEcCCCccCCCCCcchHHHHHHHHHHcCCCceEEEecCCCCHHH
Q 017781 216 DVKWLQTITKLPILVKGVLTAED-----VQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTD 290 (366)
Q Consensus 216 ~i~~lr~~~~~pv~vK~v~~~~d-----~~aGad~I~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~i~vi~~GGI~~~~d 290 (366)
.+..+-+.++. -+....+.++ .+.-.|.|+++-.-. +...++.+.++++.- ++|||+-.|-.+..+
T Consensus 17 ~l~~~L~~~g~--~v~~a~~~~~al~~l~~~~~dlii~D~~mp-----~~~G~~~~~~~r~~~--~~pii~lt~~~~~~~ 87 (121)
T d1xhfa1 17 TLKSIFEAEGY--DVFEATDGAEMHQILSEYDINLVIMDINLP-----GKNGLLLARELREQA--NVALMFLTGRDNEVD 87 (121)
T ss_dssp HHHHHHHTTTC--EEEEESSHHHHHHHHHHSCCSEEEECSSCS-----SSCHHHHHHHHHHHC--CCEEEEEESCCSHHH
T ss_pred HHHHHHHHCCC--EEEEECChHHHHHHHHhcCCCEEEeecccC-----CccCcHHHHHHHhcC--CCcEEEEECCCCHHH
Confidence 34333344453 3344556555 566788888764321 123457777776643 799999999999999
Q ss_pred HHHHHHhCcCEEEecHHH
Q 017781 291 VFKALALGASGIFIGRPV 308 (366)
Q Consensus 291 v~kalalGAd~V~igr~~ 308 (366)
..+++.+||+... ..||
T Consensus 88 ~~~a~~~Ga~dyl-~KP~ 104 (121)
T d1xhfa1 88 KILGLEIGADDYI-TKPF 104 (121)
T ss_dssp HHHHHHHTCSEEE-ESSC
T ss_pred HHHHHHcCCCEEE-eCCC
Confidence 9999999999875 4476
|
| >d1rvka1 c.1.11.2 (A:127-381) Hypothetical protein Atu3453 {Agrobacterium tumefaciens [TaxId: 358]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Enolase C-terminal domain-like family: D-glucarate dehydratase-like domain: Hypothetical protein Atu3453 species: Agrobacterium tumefaciens [TaxId: 358]
Probab=81.96 E-value=13 Score=30.94 Aligned_cols=123 Identities=12% Similarity=0.117 Sum_probs=76.4
Q ss_pred CHHHHHHHHHHHHHcCCCEEEEecCCCCCcchhHHHhhhcCCCCccccccccccccCCCccccchhhHHHhhhccCCCCC
Q 017781 134 DRNVVAQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLTLKNFQGLDLGKMDEANDSGLAAYVAGQIDRSLS 213 (366)
Q Consensus 134 d~~~~~~~l~ra~~~G~~ai~vtvd~p~~g~r~~d~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~ 213 (366)
+++.+.+.++.+.+.|++++=+.+..+.... ..+...+
T Consensus 23 tpe~~~~~a~~~~~~Gf~~~Kik~g~~~~~~------------------------------------------~~~~~~d 60 (255)
T d1rvka1 23 TPEDYGRFAETLVKRGYKGIKLHTWMPPVSW------------------------------------------APDVKMD 60 (255)
T ss_dssp SHHHHHHHHHHHHHHTCSEEEEECCCTTSTT------------------------------------------CCCHHHH
T ss_pred CHHHHHHHHHHHHHcCCCEEEEcCCCCcccc------------------------------------------ccCHHHH
Confidence 5677778888888889999988765432100 0011224
Q ss_pred HHHHHHHHHhc--CCCEEEEec--cCHHH--------HHcCCcEEEEcCCCccCCCCCcchHHHHHHHHHHcCCCceEEE
Q 017781 214 WKDVKWLQTIT--KLPILVKGV--LTAED--------VQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFL 281 (366)
Q Consensus 214 ~~~i~~lr~~~--~~pv~vK~v--~~~~d--------~~aGad~I~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~i~vi~ 281 (366)
.+.|+.+|+.+ ++.+.+-.- .+.++ .+.+..++- -...+..++.+.++++.. .+||.+
T Consensus 61 ~~~v~avR~~~G~~~~l~vDaN~~~~~~~A~~~~~~l~~~~l~~iE--------eP~~~~d~~~~~~l~~~~--~~pI~~ 130 (255)
T d1rvka1 61 LKACAAVREAVGPDIRLMIDAFHWYSRTDALALGRGLEKLGFDWIE--------EPMDEQSLSSYKWLSDNL--DIPVVG 130 (255)
T ss_dssp HHHHHHHHHHHCTTSEEEEECCTTCCHHHHHHHHHHHHTTTCSEEE--------CCSCTTCHHHHHHHHHHC--SSCEEE
T ss_pred HHHHHHHHHHcCCccceecccccccccchhhhhhhhcccchhhhhc--------CCcccccHHHHHHHHHhc--ccceee
Confidence 45677777765 334444321 23333 444444442 011223567888888887 799999
Q ss_pred ecCCCCHH-HHHHHHHhC-cCEEEecHHH
Q 017781 282 DGGVRRGT-DVFKALALG-ASGIFIGRPV 308 (366)
Q Consensus 282 ~GGI~~~~-dv~kalalG-Ad~V~igr~~ 308 (366)
+.-+.+.. +..+++..| +|.+++.-..
T Consensus 131 ~E~~~~~~~~~~~~i~~~~~dii~~d~~~ 159 (255)
T d1rvka1 131 PESAAGKHWHRAEWIKAGACDILRTGVND 159 (255)
T ss_dssp CSSCSSHHHHHHHHHHTTCCSEEEECHHH
T ss_pred hhhcccchhhhhhhhhhchhhhccccccc
Confidence 99998865 667888877 7888887543
|
| >d2d69a1 c.1.14.1 (A:134-424) Ribulose 1,5-bisphosphate carboxylase-oxygenase {Archaeon Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: RuBisCo, C-terminal domain family: RuBisCo, large subunit, C-terminal domain domain: Ribulose 1,5-bisphosphate carboxylase-oxygenase species: Archaeon Pyrococcus horikoshii [TaxId: 53953]
Probab=81.43 E-value=16 Score=31.64 Aligned_cols=66 Identities=11% Similarity=0.070 Sum_probs=43.9
Q ss_pred HHHHHHHHHcCCceec-----CCCCCCCHHHHhc--------c---CC--CceEEEeeecCCHHHHHHHHHHHHHcCCCE
Q 017781 91 YATARAASAAGTIMTL-----SSWSTSSVEEVAS--------T---GP--GIRFFQLYVYKDRNVVAQLVRRAERAGFKA 152 (366)
Q Consensus 91 ~~la~aa~~~G~~~~v-----s~~~~~~~e~i~~--------~---~~--~~~~~Qly~~~d~~~~~~~l~ra~~~G~~a 152 (366)
..++..+..-|+-++= .+...++.+|..+ + .. .-+.++| ..+.+.+.+..+.++++|.++
T Consensus 38 a~~~~~~~~GGvD~IKDDe~l~~~~~~p~~eRv~~~~~a~~~a~~~tG~~~~Ya~Ni--t~~~~~m~~ra~~~~~~G~~~ 115 (291)
T d2d69a1 38 AEIAYELWSGGIDLLKDDENFTSFPFNRFEERVRKLYRVRDRVEAETGETKEYLINI--TGPVNIMEKRAEMVANEGGQY 115 (291)
T ss_dssp HHHHHHHHHTTCSEEECCTTCSCBTTBCHHHHHHHHHHHHHHHHHHHSSCCEEECBC--CSSHHHHHHHHHHHHHHTCCE
T ss_pred HHHHHHHHccCCceecCCccCCCCCCCCHHHHHHHHHHHHHHHHHHhCCeeEEEEec--cCCHHHHHHHHHHHHHcCCCE
Confidence 4677777788888774 3344456665432 1 11 2344454 357788888888899999999
Q ss_pred EEEecC
Q 017781 153 IALTVD 158 (366)
Q Consensus 153 i~vtvd 158 (366)
+.|++.
T Consensus 116 vmi~~~ 121 (291)
T d2d69a1 116 VMIDIV 121 (291)
T ss_dssp EEEEHH
T ss_pred EEeccc
Confidence 998765
|
| >d1xkya1 c.1.10.1 (A:1-292) Dihydrodipicolinate synthase {Bacillus anthracis [TaxId: 1392]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Aldolase family: Class I aldolase domain: Dihydrodipicolinate synthase species: Bacillus anthracis [TaxId: 1392]
Probab=80.96 E-value=15 Score=31.11 Aligned_cols=84 Identities=15% Similarity=0.106 Sum_probs=50.7
Q ss_pred CceEecccccccccCChhhHHHHHHHHHcCCceec-----CCCCCCCHHHHh-------cc-CC-CceEEEeeecCCHHH
Q 017781 72 MPIMIAPTAMQKMAHPEGEYATARAASAAGTIMTL-----SSWSTSSVEEVA-------ST-GP-GIRFFQLYVYKDRNV 137 (366)
Q Consensus 72 ~Pi~iApm~~~~l~~~~~e~~la~aa~~~G~~~~v-----s~~~~~~~e~i~-------~~-~~-~~~~~Qly~~~d~~~ 137 (366)
.|.++.|+.-..-...++-...++-..+.|+...+ |++.+.+.+|.. +. .+ .+.+.+.. ..+.+.
T Consensus 8 ~~a~~TPf~~d~~iD~~~~~~~i~~l~~~Gv~gl~~~G~tGE~~~Ls~~Er~~l~~~~~~~~~~~~~vi~gv~-~~s~~~ 86 (292)
T d1xkya1 8 ATAMVTPFDINGNIDFAKTTKLVNYLIDNGTTAIVVGGTTGESPTLTSEEKVALYRHVVSVVDKRVPVIAGTG-SNNTHA 86 (292)
T ss_dssp EEECCCCBCTTSSBCHHHHHHHHHHHHHTTCCEEEESSTTTTGGGSCHHHHHHHHHHHHHHHTTSSCEEEECC-CSCHHH
T ss_pred eeeeeCCcCCCcCcCHHHHHHHHHHHHHCCCCEEEECeEccchhhCCHHHHHHHHHHHHHHhCCCceEEEecC-cccHHH
Confidence 35556665322222233345777777778886543 233456666642 22 22 45666665 345566
Q ss_pred HHHHHHHHHHcCCCEEEEe
Q 017781 138 VAQLVRRAERAGFKAIALT 156 (366)
Q Consensus 138 ~~~~l~ra~~~G~~ai~vt 156 (366)
+.++.++++++|++++.+.
T Consensus 87 ~i~~a~~a~~~Gad~ilv~ 105 (292)
T d1xkya1 87 SIDLTKKATEVGVDAVMLV 105 (292)
T ss_dssp HHHHHHHHHHTTCSEEEEE
T ss_pred HHHHHHHHHHcCCCEEEEC
Confidence 6788999999999999874
|
| >d1dz3a_ c.23.1.1 (A:) Sporulation response regulator Spo0A {Bacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Flavodoxin-like superfamily: CheY-like family: CheY-related domain: Sporulation response regulator Spo0A species: Bacillus stearothermophilus [TaxId: 1422]
Probab=80.94 E-value=8.1 Score=28.50 Aligned_cols=74 Identities=15% Similarity=0.130 Sum_probs=52.3
Q ss_pred EEEeccCHHH-----HHcCCcEEEEcCCCccCCCCCcchHHHHHHHHHHcCCCceEEEecCCCCHHHHHHHHHhCcCEEE
Q 017781 229 LVKGVLTAED-----VQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIF 303 (366)
Q Consensus 229 ~vK~v~~~~d-----~~aGad~I~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~i~vi~~GGI~~~~dv~kalalGAd~V~ 303 (366)
+|....+.++ .+...|.|.++-+-- +..-++++.++++..+...||++-.+-.+..+..+++.+||+...
T Consensus 29 ~v~~a~~g~~al~~~~~~~~dlillD~~mP-----~~dG~e~~~~ir~~~~~~~~ii~~t~~~~~~~~~~a~~~Ga~~~l 103 (123)
T d1dz3a_ 29 VIGTAYNGQDCLQMLEEKRPDILLLDIIMP-----HLDGLAVLERIRAGFEHQPNVIMLTAFGQEDVTKKAVELGASYFI 103 (123)
T ss_dssp EEEEESSHHHHHHHHHHHCCSEEEEESCCS-----SSCHHHHHHHHHHHCSSCCEEEEEEETTCHHHHHHHHHTTCEEEE
T ss_pred EEEEECCHHHHHHHHHhcCCCEEEEcCCCC-----CCCHHHHHHHHHhcCCCCCeEEEEECcCCHHHHHHHHHCCCCEEE
Confidence 3444556655 556689888765321 224577888888765545678888888999999999999999865
Q ss_pred ecHHH
Q 017781 304 IGRPV 308 (366)
Q Consensus 304 igr~~ 308 (366)
-.||
T Consensus 104 -~KP~ 107 (123)
T d1dz3a_ 104 -LKPF 107 (123)
T ss_dssp -ECSS
T ss_pred -ECCC
Confidence 4575
|
| >d7reqa2 c.23.6.1 (A:561-728) Methylmalonyl-CoA mutase alpha subunit, C-terminal domain {Propionibacterium freudenreichii, subsp. shermanii [TaxId: 1744]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Flavodoxin-like superfamily: Cobalamin (vitamin B12)-binding domain family: Cobalamin (vitamin B12)-binding domain domain: Methylmalonyl-CoA mutase alpha subunit, C-terminal domain species: Propionibacterium freudenreichii, subsp. shermanii [TaxId: 1744]
Probab=80.84 E-value=3 Score=33.49 Aligned_cols=80 Identities=20% Similarity=0.119 Sum_probs=50.0
Q ss_pred HHHHHHHhcCCCEEEEec-cCHHH-----HHcCCcEEEEcCCCccCCCCCcchHHHHHHHHHH---cC-CCceEEEecCC
Q 017781 216 DVKWLQTITKLPILVKGV-LTAED-----VQAGAAGIIVSNHGARQLDYVPATIMALEEVVKA---TQ-GRIPVFLDGGV 285 (366)
Q Consensus 216 ~i~~lr~~~~~pv~vK~v-~~~~d-----~~aGad~I~vs~~gg~~~~~~~~~~~~l~~i~~~---~~-~~i~vi~~GGI 285 (366)
.+...-+..+.-|+.=+. .++++ .+.++|.|.+|..-+. ..+..+++.+. .+ .+++|+ .||+
T Consensus 56 ~va~~l~~~G~eVi~lg~~~~~e~iv~aa~~~~advI~iSs~~~~-------~~~~~~~l~~~L~~~g~~~v~Vi-vGG~ 127 (168)
T d7reqa2 56 VIATAYADLGFDVDVGPLFQTPEETARQAVEADVHVVGVSSLAGG-------HLTLVPALRKELDKLGRPDILIT-VGGV 127 (168)
T ss_dssp HHHHHHHHTTCEEEECCTTBCHHHHHHHHHHHTCSEEEEEECSSC-------HHHHHHHHHHHHHHTTCTTSEEE-EEES
T ss_pred HHHHHHHhCCcceecCCCcCcHHHHHHHHHccCCCEEEEecCccc-------chHHHHHHHHHHHhcCCCCeEEE-EeCC
Confidence 333333444655555444 46666 8889999999975431 22333333332 22 357776 4777
Q ss_pred CCHHHHHHHHHhCcCEEE
Q 017781 286 RRGTDVFKALALGASGIF 303 (366)
Q Consensus 286 ~~~~dv~kalalGAd~V~ 303 (366)
--.+|..+...+|.++|.
T Consensus 128 ip~~d~~~l~~~Gv~~iF 145 (168)
T d7reqa2 128 IPEQDFDELRKDGAVEIY 145 (168)
T ss_dssp CCGGGHHHHHHHTEEEEE
T ss_pred CCHHHHHHHHhCCCCEEE
Confidence 788999888899999864
|
| >d1rd5a_ c.1.2.4 (A:) Trp synthase alpha-subunit {Maize (Zea mays) [TaxId: 4577]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Ribulose-phoshate binding barrel family: Tryptophan biosynthesis enzymes domain: Trp synthase alpha-subunit species: Maize (Zea mays) [TaxId: 4577]
Probab=80.68 E-value=0.87 Score=39.58 Aligned_cols=37 Identities=27% Similarity=0.448 Sum_probs=31.5
Q ss_pred HHHHHHHHHhcCCCEEEE-eccCHHH----HHcCCcEEEEcC
Q 017781 214 WKDVKWLQTITKLPILVK-GVLTAED----VQAGAAGIIVSN 250 (366)
Q Consensus 214 ~~~i~~lr~~~~~pv~vK-~v~~~~d----~~aGad~I~vs~ 250 (366)
.+.++++|+.+++||.+. |+.++++ .+.|||+++|..
T Consensus 189 ~~~i~~ik~~t~~Pi~vGFGI~~~e~v~~~~~~gaDGvIVGS 230 (261)
T d1rd5a_ 189 ESLIQEVKKVTNKPVAVGFGISKPEHVKQIAQWGADGVIIGS 230 (261)
T ss_dssp HHHHHHHHHHCSSCEEEESCCCSHHHHHHHHHTTCSEEEECH
T ss_pred HHHHHHhhhccCCCeEEEcCCCCHHHHHHHHhcCCCEEEECH
Confidence 356999999999999999 6678887 777999999954
|
| >d1s2wa_ c.1.12.7 (A:) Phosphoenolpyruvate mutase {Blue mussel (Mytilus edulis) [TaxId: 6550]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Phosphoenolpyruvate/pyruvate domain family: Phosphoenolpyruvate mutase/Isocitrate lyase-like domain: Phosphoenolpyruvate mutase species: Blue mussel (Mytilus edulis) [TaxId: 6550]
Probab=80.53 E-value=4.8 Score=34.79 Aligned_cols=80 Identities=23% Similarity=0.218 Sum_probs=51.4
Q ss_pred CCCEEEEeccCHHH----HHcCCcEEEEcCCCc-c---CCCCCcch----HHHHHHHHHHcCCCceEEEec--CCCCHHH
Q 017781 225 KLPILVKGVLTAED----VQAGAAGIIVSNHGA-R---QLDYVPAT----IMALEEVVKATQGRIPVFLDG--GVRRGTD 290 (366)
Q Consensus 225 ~~pv~vK~v~~~~d----~~aGad~I~vs~~gg-~---~~~~~~~~----~~~l~~i~~~~~~~i~vi~~G--GI~~~~d 290 (366)
+.++++=++.+.-. .++|+++|.+|+++= . ..|.+.-+ ++.+..|.+.+ ++||++|. |..++.+
T Consensus 15 ~~~~~~p~~~Da~SAr~~e~aGf~a~~~ss~~~aas~G~pD~~~lt~~e~~~~~~~I~~~~--~lPv~~D~d~GyG~~~~ 92 (275)
T d1s2wa_ 15 KDLEFIMEAHNGLSARIVQEAGFKGIWGSGLSVSAQLGVRDSNEASWTQVVEVLEFMSDAS--DVPILLDADTGYGNFNN 92 (275)
T ss_dssp SSCEEEEEECSHHHHHHHHHHTCSCEEECCHHHHHTC---------CHHHHHHHHHHHHTC--SSCEEEECCSSCSSHHH
T ss_pred CCCEEeecCcCHHHHHHHHHcCCCEEEhhHHHHHHHcCCCCCCccchhhHHHHHHhhhccc--CCceeEecccccccchH
Confidence 56777778866654 899999999987541 1 12333222 34456666666 89999987 6667676
Q ss_pred HH----HHHHhCcCEEEecH
Q 017781 291 VF----KALALGASGIFIGR 306 (366)
Q Consensus 291 v~----kalalGAd~V~igr 306 (366)
+. .....||.+|.|=-
T Consensus 93 v~~tv~~~~~aGaagi~iED 112 (275)
T d1s2wa_ 93 ARRLVRKLEDRGVAGACLED 112 (275)
T ss_dssp HHHHHHHHHHTTCCEEEEEC
T ss_pred HHHHHHHHHHhccceeEeec
Confidence 65 44457999998854
|
| >d1eixa_ c.1.2.3 (A:) Orotidine 5'-monophosphate decarboxylase (OMP decarboxylase) {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Ribulose-phoshate binding barrel family: Decarboxylase domain: Orotidine 5'-monophosphate decarboxylase (OMP decarboxylase) species: Escherichia coli [TaxId: 562]
Probab=80.31 E-value=0.44 Score=40.50 Aligned_cols=58 Identities=22% Similarity=0.320 Sum_probs=37.4
Q ss_pred HHcCCcEEEEcCCCccCCCCCcchHHHHHHHHHHcCCCceEEEecCCCCHHH----------HHHHHHhCcCEEEecHHH
Q 017781 239 VQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTD----------VFKALALGASGIFIGRPV 308 (366)
Q Consensus 239 ~~aGad~I~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~i~vi~~GGI~~~~d----------v~kalalGAd~V~igr~~ 308 (366)
.+.|+++++.+.+ . +..+++..+ .-.++++.||+-..+ .-+|+..|||.+.|||++
T Consensus 148 ~~~~~~~~~~~~~----------~---~~~~~~~~~-~~~~~~tPGI~~~~~~~~dq~r~~tp~~Ai~~GaD~iIVGR~I 213 (231)
T d1eixa_ 148 QKCGLDGVVCSAQ----------E---AVRFKQVFG-QEFKLVTPGIRPQGSEAGDQRRIMTPEQALSAGVDYMVIGRPV 213 (231)
T ss_dssp HHTTCSEEECCGG----------G---HHHHHHHHC-SSSEEEECCBCCTTCCCTTCCSCBCHHHHHHTTCSEEEECHHH
T ss_pred HHhccccccccch----------h---hhhhhhhcC-CccceecCCcccCCCCccCccccCCHHHHHHcCCCEEEECCcc
Confidence 5667777765332 1 223333332 345888888875321 456778999999999998
Q ss_pred HH
Q 017781 309 VY 310 (366)
Q Consensus 309 l~ 310 (366)
+.
T Consensus 214 t~ 215 (231)
T d1eixa_ 214 TQ 215 (231)
T ss_dssp HT
T ss_pred cC
Confidence 74
|
| >d1ccwa_ c.23.6.1 (A:) Glutamate mutase, small subunit {Clostridium cochlearium [TaxId: 1494]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Flavodoxin-like superfamily: Cobalamin (vitamin B12)-binding domain family: Cobalamin (vitamin B12)-binding domain domain: Glutamate mutase, small subunit species: Clostridium cochlearium [TaxId: 1494]
Probab=80.10 E-value=4.5 Score=31.08 Aligned_cols=103 Identities=17% Similarity=0.145 Sum_probs=61.0
Q ss_pred HHHHHHHHhcCCCEEEEec-cCHHH-----HHcCCcEEEEcCCCccCCCCCcchH-HHHHHHHHHcCCCceEEEecCCCC
Q 017781 215 KDVKWLQTITKLPILVKGV-LTAED-----VQAGAAGIIVSNHGARQLDYVPATI-MALEEVVKATQGRIPVFLDGGVRR 287 (366)
Q Consensus 215 ~~i~~lr~~~~~pv~vK~v-~~~~d-----~~aGad~I~vs~~gg~~~~~~~~~~-~~l~~i~~~~~~~i~vi~~GGI~~ 287 (366)
..+..+-+..+.-++.=|. ...++ .+.++|.|-+|..-+.. .+.+ +.+..+++....++||++-|++-+
T Consensus 21 ~mva~~l~~~G~~V~~LG~~~p~e~iv~a~~~~~~d~v~lS~~~~~~----~~~~~~~~~~l~~~~~~~i~iivGG~~~~ 96 (137)
T d1ccwa_ 21 KILDHAFTNAGFNVVNIGVLSPQELFIKAAIETKADAILVSSLYGQG----EIDCKGLRQKCDEAGLEGILLYVGGNIVV 96 (137)
T ss_dssp HHHHHHHHHTTCEEEEEEEEECHHHHHHHHHHHTCSEEEEEECSSTH----HHHHTTHHHHHHHTTCTTCEEEEEESCSS
T ss_pred HHHHHHHHHCCCeEEecccccCHHHHHHHHHhcCCCEEEEeeccccc----hHHHHHHHHHHHHhccCCCEEEEeCCcCC
Confidence 4555555555666666665 45566 88899999998754321 1122 233444443224799999888764
Q ss_pred ----HHHHHHH-HHhCcCEEEecHHHHHHhhhcCHHHHHHHHHHHHHHHH
Q 017781 288 ----GTDVFKA-LALGASGIFIGRPVVYSLAAEGEKGVRRVLEMLREEFE 332 (366)
Q Consensus 288 ----~~dv~ka-lalGAd~V~igr~~l~~l~~~G~~gv~~~~~~l~~el~ 332 (366)
..++.+- -++|.|+|.-.. .....+++.++++|+
T Consensus 97 ~~~~~~~~~~~l~~~Gv~~if~~~-----------t~~~~~~~~l~~~l~ 135 (137)
T d1ccwa_ 97 GKQHWPDVEKRFKDMGYDRVYAPG-----------TPPEVGIADLKKDLN 135 (137)
T ss_dssp SSCCHHHHHHHHHHTTCSEECCTT-----------CCHHHHHHHHHHHHT
T ss_pred CccccHHHHHHHHHcCCCEEECCC-----------CCHHHHHHHHHHHhC
Confidence 4555544 468999985221 123345666666664
|