Citrus Sinensis ID: 017795

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360------
Protein Sequence
MLAVLLLEDLEVANQNVLTVLAVGLIIIILLPVTIPVVLVFFTEPPPPVEETLLAETNKGEASKSEDYQEEVILSEVEDEKPPEVDSLPASERQKRIAHLQAKLFQAAAEGAVRVKRRKGPRRGEDFTLPQALMKADFLLLFFSLVLASGSGLTVIDNLGQICQSLGYADTSIYVSMISIWNFLGRVGGGYFSEAIVRKFAYPRPVAMAVAQVVMAFALLYYAIGWPGEIYVTTVLVGLSYGAHWAIVPAAASELFGLKSFGALYNFLTLASPAGSLIFSGVIASGIYDYYAEKQAGLLWKYNGNMLPVSFRDQETPTCLGSICYSITCGIMAGLCIIAMVMSLIVVHRTKSVYAQLYGNLNRSNR
Secondary Structure (PSIPRED)
cEEEEEEcccccccHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccHHHHHccccccccccccHHHHHHHccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccHHHHHHcHHHHHHHHHHHHHHHHHHHHHHcHHHHHHHHcccccHHHHHHHHHHHHHHHHcccccHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHccccccHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccc
Secondary Structure Prediction (SSPRO)
cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccHHHccccccccccccccccccccEccccccccccccccccccHHHccccHHHHHHHHHHHcccEEEEcccccccccccHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHccccccHEHHHHHHHHHHHHHHHHcHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHcccccEEEEEEEHHHHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHccccccccHHHcccccccccccEEccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccc
Coil and Loop (DISEMBL)
MLAVLLLEDLEVANQNVLTVLAVGLIIIILLPVTIPVVLVffteppppveeTLLAetnkgeasksedyqeEVILsevedekppevdslpaSERQKRIAHLQAKLFQAAAEGAVRVkrrkgprrgedftlpqALMKADFLLLFFSLVLasgsgltvIDNLGQICQslgyadtsIYVSMISIWNFLgrvgggyfSEAIVRKFAYPRPVAMAVAQVVMAFALLYYAIGWPGEIYVTTVLVGLSYGAHWAIVPAAASELFGLKSFGALYNFltlaspagsliFSGVIASGIYDYYAEKQAGLLWkyngnmlpvsfrdqetptclgsicySITCGIMAGLCIIAMVMSLIVVHRTKSVYAQLYgnlnrsnr
Flexible Loop (DISEMBL)
MLAVLLLEDLEVANQNVLTVLAVGLIIIILLPVTIPVVLVFFTEPPPPVEETLLAetnkgeasksedyQEEVIlsevedekppevDSLPASERQKRIAHLQAKLFQAaaegavrvkrrkgprrgedftlPQALMKADFLLLFFSLVLASGSGLTVIDNLGQICQSLGYADTSIYVSMISIWNFLGRVGGGYFSEAIVRKFAYPRPVAMAVAQVVMAFALLYYAIGWPGEIYVTTVLVGLSYGAHWAIVPAAASELFGLKSFGALYNFLTLASPAGSLIFSGVIASGIYDYYAEKQAGLLWKYNGNMLPVSFRDQETPTCLGSICYSITCGIMAGLCIIAMVMSLIVVHRTKSVYAqlygnlnrsnr
Low Complexity Region (SEG)
MlavllledlevaNQNvltvlavgliiiillpvtipvvlvffteppppveetllAETNKGEASKSEDYQEEVILSEVEDEKPPEVDSLPASERQKRIAHLQAKLFQAAAEGAvrvkrrkgprrgEDFTLPQALMKADflllffslvlasgsglTVIDNLGQICQSLGYADTSIYVSMISIWNFLGRVGGGYFSEAIVRKFAYPRPvamavaqvvmaFALLYYAIGWPGEIYVTTVLVGLSYGAHWAIVPAAASELFGLKSFGALYNFLTLASPAGSLIFSGVIASGIYDYYAEKQAGLLWKYNGNMLPVSFRDQETPTCLGSICYSITCGIMAGLCIIAMVMSLIVVHRTKSVYAQLYGNLNRSNR
Disordered region (IsUnstruct)
**AVLLLEDLEVANQNVLTVLAVGLIIIILLPVTIPVVLVFFT************************************************************LF*********************FTLPQALMKADFLLLFFSLVLASGSGLTVIDNLGQICQSLGYADTSIYVSMISIWNFLGRVGGGYFSEAIVRKFAYPRPVAMAVAQVVMAFALLYYAIGWPGEIYVTTVLVGLSYGAHWAIVPAAASELFGLKSFGALYNFLTLASPAGSLIFSGVIASGIYDYYAEKQAGLLWKYNGNMLPVSFRDQETPTCLGSICYSITCGIMAGLCIIAMVMSLIVVHRTKSVYAQLYGN******
Disordered Region (DISOPRED)
MLAVLLLEDLEVANQNVLTVLAVGLIIIILLPVTIPVVLVFFTEPP*********************************************************************************TLPQALMKADFLLLFFSLVLASGSGLTVIDNLGQICQSLGYADTSIYVSMISIWNFLGRVGGGYFSEAIVRKFAYPRPVAMAVAQVVMAFALLYYAIGWPGEIYVTTVLVGLSYGAHWAIVPAAASELFGLKSFGALYNFLTLASPAGSLIFSGVIASGIYDYYAEKQAGLLWKY*GNMLPVSFRDQETPTCLGSICYSITCGIMAGLCIIAMVMSLIVVHRTKSVYA***********
Disordered Region (DISEMBL)
MLAVLLLEDLEVANQNVLTVLAVGLIIIILLPVTIPVVLVFFTEPPPPVEETLLAE*************EEVILSE***************ERQKRIAHLQAKLFQAAAEGAVRVKRRKGPRRGEDFTLPQALMKADFLLLFFSLVLASGSGLTVIDNLGQICQSLGYADTSIYVSMISIWNFLGRVGGGYFSEAIVRKFAYPRPVAMAVAQVVMAFALLYYAIGWPGEIYVTTVLVGLSYGAHWAIVPAAASELFGLKSFGALYNFLTLASPAGSLIFSGVIASGIYDYYAEKQAGLLWKYNGNMLPVSFRDQETPTCLGSICYSITCGIMAGLCIIAMVMSLIVVHRTKSVYAQLYGNLNRSNR
Disordered Region (DISPRO)
MLAVLLLEDLEVANQNVLTVLAVGLIIIILLPVTIPVVLVFFTEPPPPVEETLLAE*****************************************AHLQAKLFQAAAEGAVRVKRRKGPRRGEDFTLPQALMKADFLLLFFSLVLASGSGLTVIDNLGQICQSLGYADTSIYVSMISIWNFLGRVGGGYFSEAIVRKFAYPRPVAMAVAQVVMAFALLYYAIGWPGEIYVTTVLVGLSYGAHWAIVPAAASELFGLKSFGALYNFLTLASPAGSLIFSGVIASGIYDYYAEKQAG****Y************ETPTCLGSICYSITCGIMAGLCIIAMVMSLIVVHRTKSVYAQLYGNLNR***
Transmembrane Helix (TMHMM)
oooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiii
Transmembrane Helix (HMMTOP)
ooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHooooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiii
Transmembrane Helix (MEMSAT)
oooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHoooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
oooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooHHHHHHHHHHHHHHHHHHiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHoooHHHHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHoooooooooooHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHoooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiii
Signal Peptide (SignalP HMM Mode)
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MLAVLLLEDLEVANQNVLTVLAVGLIIIILLPVTIPVVLVFFTEPPPPVEETLLAETNKGEASKSEDYQEEVILSEVEDEKPPEVDSLPASERQKRIAHLQAKLFQAAAEGAVRVKRRKGPRRGEDFTLPQALMKADFLLLFFSLVLASGSGLTVIDNLGQICQSLGYADTSIYVSMISIWNFLGRVGGGYFSEAIVRKFAYPRPVAMAVAQVVMAFALLYYAIGWPGEIYVTTVLVGLSYGAHWAIVPAAASELFGLKSFGALYNFLTLASPAGSLIFSGVIASGIYDYYAEKQAGLLWKYNGNMLPVSFRDQETPTCLGSICYSITCGIMAGLCIIAMVMSLIVVHRTKSVYAQLYGNLNRSNR
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	366	2.2.26 [Sep-21-2011]
P37662	402	Inner membrane protein Yh	N/A	no	0.415	0.378	0.288	3e-05
Q6CGU8	486	Probable transporter MCH1	no	no	0.568	0.427	0.254	0.0004

>sp|P37662|YHJX_ECOLI Inner membrane protein YhjX OS=Escherichia coli (strain K12) GN=yhjX PE=1 SV=1

 Score = 50.1 bits (118), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 47/163 (28%), Positives = 76/163 (46%), Gaps = 11/163 (6%)

Query: 125 EDFTLPQALMKADFLLLFFSLVLASGSGLTVIDNLGQICQSLGYADT---SIYVSMISIW 181
           +D+TL +++ K  + +L    + A  SGL VI     I QSL + D    +  V++ISI 
Sbjct: 203 KDYTLAESMRKPQYWMLAVMFLTACMSGLYVIGVAKDIAQSLAHLDVVSAANAVTVISIA 262

Query: 182 NFLGRVGGGYFSEAIVRKFAYPRPVAMAVAQVVMAFALLYYAIGWPGEIYVTTVLVGLSY 241
           N  GR+  G  S+ I R     R + +     ++  A L +A       +     V  ++
Sbjct: 263 NLSGRLVLGILSDKIAR----IRVITIGQVISLVGMAALLFAPLNAVTFFAAIACVAFNF 318

Query: 242 GAHWAIVPAAASELFGL----KSFGALYNFLTLASPAGSLIFS 280
           G    + P+  SE FGL    K++G +Y    + S  GS+I S
Sbjct: 319 GGTITVFPSLVSEFFGLNNLAKNYGVIYLGFGIGSICGSIIAS 361

Escherichia coli (strain K12) (taxid: 83333)

>sp|Q6CGU8|MCH1_YARLI Probable transporter MCH1 OS=Yarrowia lipolytica (strain CLIB 122 / E 150) GN=MCH1 PE=3 SV=1

 Score = 46.2 bits (108), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 63/248 (25%), Positives = 107/248 (43%), Gaps = 40/248 (16%)

Query: 96  RIAHLQAKLFQAAAEGAVRVKRRKGPRRGEDFTLPQALMKADFLLLFFSLVLASGSGLTV 155
           R A   A   +  AE +       GP   E  TL +        L     V   G     
Sbjct: 234 RTAESMASELRKKAEASTDCNC-DGPGH-EGATLKEFFTDKTAWLFLLCFVFIGGPFEMF 291

Query: 156 IDNLGQICQSLGY--ADT---SIYVSMISIWNFLGRVGGGYFSEAIVRKFAYPRPVAMAV 210
            +N+G I  ++    AD+   S +VS+ + ++ + R+  G+ SEA+    +  RPV ++V
Sbjct: 292 QNNMGAILDTVTVENADSPSFSTHVSLFATFSTVSRLVVGFSSEAMESHVS--RPVLLSV 349

Query: 211 AQVVMAFALLYYAIGWPGEIY----------VTTVLVGLSYGAHWAIVPAAASELFGLKS 260
             +V A   L      P  I+          V T++ G SYG+ + +VP   ++++G+ +
Sbjct: 350 IALVAACIHLMV----PSGIFTVFDNAKYFSVVTIVNGFSYGSSFTLVPTIVTKVWGIAN 405

Query: 261 FGALYNFLTLASPAGSLIFSGVIASGIYDYYAEKQAGLLWKYNGNMLPVSFRDQETPTCL 320
            G ++    LA   GSL + G++ + +YD  A  + G+     G+M  V         C 
Sbjct: 406 LGTIWGSFILALAVGSLGY-GLLFAKVYD--AASEVGV-----GSMSQV---------CS 448

Query: 321 GSICYSIT 328
           G  CY +T
Sbjct: 449 GVHCYGLT 456

Probable transporter.

Yarrowia lipolytica (strain CLIB 122 / E 150) (taxid: 284591)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	366
255540211	589	conserved hypothetical protein [Ricinus	0.983	0.611	0.761	1e-150
224122040	591	predicted protein [Populus trichocarpa]	0.983	0.609	0.745	1e-147
147789864	590	hypothetical protein VITISV_001273 [Viti	0.898	0.557	0.732	1e-139
359491100	588	PREDICTED: uncharacterized protein LOC10	0.898	0.559	0.732	1e-139
147853498	591	hypothetical protein VITISV_016786 [Viti	0.983	0.609	0.663	1e-129
225451469	591	PREDICTED: uncharacterized protein LOC10	0.983	0.609	0.663	1e-129
255536871	589	conserved hypothetical protein [Ricinus	0.983	0.611	0.659	1e-123
312282435	579	unnamed protein product [Thellungiella h	0.948	0.599	0.614	1e-119
225451471	591	PREDICTED: uncharacterized protein LOC10	0.983	0.609	0.655	1e-118
297807437	579	nodulin family protein [Arabidopsis lyra	0.948	0.599	0.606	1e-117

>gi|255540211|ref|XP_002511170.1| conserved hypothetical protein [Ricinus communis] gi|223550285|gb|EEF51772.1| conserved hypothetical protein [Ricinus communis]

 Score =  536 bits (1380), Expect = e-150,   Method: Compositional matrix adjust.
 Identities = 278/365 (76%), Positives = 319/365 (87%), Gaps = 5/365 (1%)

Query: 1   MLAVLLLEDLEVANQNVLTVLAVGLIIIILLPVTIPVVLVFFTEPPPPVEETLLAETNKG 60
           +L VL+LED+   +Q+++T+ ++ LII+ILLP+TIPV+LVFF EP   VEETLL E  K 
Sbjct: 226 LLGVLILEDVVDVSQSLVTLFSIILIILILLPITIPVLLVFFFEPRSQVEETLLPEPEKQ 285

Query: 61  EASKSEDYQE--EVILSEVEDEKPPEVDSLPASERQKRIAHLQAKLFQAAAEGAVRVKRR 118
           E   S   Q+  EVILSEVEDEKP EV+SLPASER KRIAHLQAKLFQAAAEGAVRVKR+
Sbjct: 286 EGVNSGQEQDANEVILSEVEDEKPAEVESLPASERHKRIAHLQAKLFQAAAEGAVRVKRK 345

Query: 119 KGPRRGEDFTLPQALMKADFLLLFFSLVLASGSGLTVIDNLGQICQSLGYADTSIYVSMI 178
           KGPRRGEDFTL QAL+KADFLL+FFSL+LASGSGLTVIDNLGQICQSLGY +TSI+VSMI
Sbjct: 346 KGPRRGEDFTLLQALVKADFLLMFFSLILASGSGLTVIDNLGQICQSLGYTNTSIFVSMI 405

Query: 179 SIWNFLGRVGGGYFSEAIVRKFAYPRPVAMAVAQVVMAFALLYYAIGWPGEIYVTTVLVG 238
           SIWNFLGRVGGGYFSEAI+R FAYPRPVAMAVAQV+MA  L YYA+GWPGEIYV ++L+G
Sbjct: 406 SIWNFLGRVGGGYFSEAIIRNFAYPRPVAMAVAQVIMAIGLFYYAMGWPGEIYVVSILIG 465

Query: 239 LSYGAHWAIVPAAASELFGLKSFGALYNFLTLASPAGSLIFSGVIASGIYDYYAEKQAGL 298
           LSYGAHWAIVPAA SELFGLKSFGALYNFLTL+S AGSLIFSGVIASGIYDYYAEKQA  
Sbjct: 466 LSYGAHWAIVPAAVSELFGLKSFGALYNFLTLSSTAGSLIFSGVIASGIYDYYAEKQA-- 523

Query: 299 LWKYN-GNMLPVSFRDQETPTCLGSICYSITCGIMAGLCIIAMVMSLIVVHRTKSVYAQL 357
           + + N G+ML     ++E+ TC+GSICYS+TCGIM+GLCI+AM++SLIVVHRT+SVYAQL
Sbjct: 524 IQQLNAGSMLAAHLVEEESLTCVGSICYSLTCGIMSGLCIVAMILSLIVVHRTRSVYAQL 583

Query: 358 YGNLN 362
           YG  N
Sbjct: 584 YGKTN 588

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224122040|ref|XP_002318735.1| predicted protein [Populus trichocarpa] gi|222859408|gb|EEE96955.1| predicted protein [Populus trichocarpa]

 Score =  526 bits (1354), Expect = e-147,   Method: Compositional matrix adjust.
 Identities = 269/361 (74%), Positives = 311/361 (86%), Gaps = 1/361 (0%)

Query: 1   MLAVLLLEDLEVANQNVLTVLAVGLIIIILLPVTIPVVLVFFTEPPPPVEETLLAETNKG 60
           +L VL++EDL   NQ +LTVL   LII++LLP+TIPV+L F++EP  PVEE LL ET+K 
Sbjct: 228 LLGVLIVEDLVNLNQTLLTVLVAVLIILVLLPITIPVLLAFYSEPRHPVEENLLPETDKQ 287

Query: 61  EASKSE-DYQEEVILSEVEDEKPPEVDSLPASERQKRIAHLQAKLFQAAAEGAVRVKRRK 119
           E+SKSE       ILSE+EDEKP E+D L  +ER +RIAHLQAKLFQAAAEGAVR+KRRK
Sbjct: 288 ESSKSELQIGGSFILSEMEDEKPSEMDLLQPTERHRRIAHLQAKLFQAAAEGAVRIKRRK 347

Query: 120 GPRRGEDFTLPQALMKADFLLLFFSLVLASGSGLTVIDNLGQICQSLGYADTSIYVSMIS 179
           GPRRGEDFTL QAL KADFLL+FFSLVLASGSGLTVIDNLGQICQSLGY DTSI+VSMIS
Sbjct: 348 GPRRGEDFTLMQALRKADFLLMFFSLVLASGSGLTVIDNLGQICQSLGYNDTSIFVSMIS 407

Query: 180 IWNFLGRVGGGYFSEAIVRKFAYPRPVAMAVAQVVMAFALLYYAIGWPGEIYVTTVLVGL 239
           IWNFLGRVGGGYFSEAI+RK+AYPRPVAMAV QVVMA AL YYA+GWPGEIYV ++ +GL
Sbjct: 408 IWNFLGRVGGGYFSEAIIRKYAYPRPVAMAVVQVVMAVALFYYAMGWPGEIYVLSIFIGL 467

Query: 240 SYGAHWAIVPAAASELFGLKSFGALYNFLTLASPAGSLIFSGVIASGIYDYYAEKQAGLL 299
            YGAHWAIVPA+ASELFGLKSFGALYNFLTL+SPAGSLIFSGVIASGIYD++A KQAGL 
Sbjct: 468 GYGAHWAIVPASASELFGLKSFGALYNFLTLSSPAGSLIFSGVIASGIYDHFARKQAGLQ 527

Query: 300 WKYNGNMLPVSFRDQETPTCLGSICYSITCGIMAGLCIIAMVMSLIVVHRTKSVYAQLYG 359
              +G++      ++++ TC+G  CYS+TCGIM+GLCIIA+++SLIVV RTKSVYAQLYG
Sbjct: 528 QLNSGSLPATHLEEEKSLTCVGLECYSLTCGIMSGLCIIAVILSLIVVRRTKSVYAQLYG 587

Query: 360 N 360
           N
Sbjct: 588 N 588

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|147789864|emb|CAN73867.1| hypothetical protein VITISV_001273 [Vitis vinifera]

 Score =  499 bits (1286), Expect = e-139,   Method: Compositional matrix adjust.
 Identities = 241/329 (73%), Positives = 279/329 (84%)

Query: 32  PVTIPVVLVFFTEPPPPVEETLLAETNKGEASKSEDYQEEVILSEVEDEKPPEVDSLPAS 91
           PV IP++LVFF+ P  P EE  L E  K E+ KSE   EEVILSEVEDEKP EVDSLPAS
Sbjct: 259 PVAIPIILVFFSGPIAPSEEAFLPEPQKQESGKSEQDGEEVILSEVEDEKPVEVDSLPAS 318

Query: 92  ERQKRIAHLQAKLFQAAAEGAVRVKRRKGPRRGEDFTLPQALMKADFLLLFFSLVLASGS 151
           ER KRIAHLQAKLFQAAAEGAVRVKR++GPRRGEDFTL QAL+KADF L+F SL+LA+GS
Sbjct: 319 ERHKRIAHLQAKLFQAAAEGAVRVKRKRGPRRGEDFTLMQALIKADFWLIFVSLLLAAGS 378

Query: 152 GLTVIDNLGQICQSLGYADTSIYVSMISIWNFLGRVGGGYFSEAIVRKFAYPRPVAMAVA 211
           GLT+IDN+GQ+C+SLGY+DTS++VSMISIWNFLGRVGGGYFSE+IVR FA+PRPV+MA+ 
Sbjct: 379 GLTIIDNMGQMCESLGYSDTSVFVSMISIWNFLGRVGGGYFSESIVRNFAFPRPVSMAMF 438

Query: 212 QVVMAFALLYYAIGWPGEIYVTTVLVGLSYGAHWAIVPAAASELFGLKSFGALYNFLTLA 271
           QV+M+  LLYYA+ WPG IYV +VL+GL YGAHWAIVPAAASELFGLKSFGALYNFLTL+
Sbjct: 439 QVLMSVGLLYYALAWPGAIYVVSVLIGLGYGAHWAIVPAAASELFGLKSFGALYNFLTLS 498

Query: 272 SPAGSLIFSGVIASGIYDYYAEKQAGLLWKYNGNMLPVSFRDQETPTCLGSICYSITCGI 331
           S  G+LIFS VIASGIYD+YAEKQA L     G M  +     E+ +C G ICYSITCG+
Sbjct: 499 SSIGTLIFSEVIASGIYDHYAEKQAALKQHSLGAMAGLPLGKDESLSCEGYICYSITCGV 558

Query: 332 MAGLCIIAMVMSLIVVHRTKSVYAQLYGN 360
           M+GLC++A+V+SLIVVHRTKSVYA LYG 
Sbjct: 559 MSGLCLVAVVLSLIVVHRTKSVYANLYGR 587

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359491100|ref|XP_002280267.2| PREDICTED: uncharacterized protein LOC100247479 [Vitis vinifera] gi|297734441|emb|CBI15688.3| unnamed protein product [Vitis vinifera]

 Score =  499 bits (1285), Expect = e-139,   Method: Compositional matrix adjust.
 Identities = 241/329 (73%), Positives = 279/329 (84%)

Query: 32  PVTIPVVLVFFTEPPPPVEETLLAETNKGEASKSEDYQEEVILSEVEDEKPPEVDSLPAS 91
           PV IP++LVFF+ P  P EE  L E  K E+ KSE   EEVILSEVEDEKP EVDSLPAS
Sbjct: 257 PVAIPIILVFFSGPIAPSEEAFLPEPQKQESGKSEQDGEEVILSEVEDEKPVEVDSLPAS 316

Query: 92  ERQKRIAHLQAKLFQAAAEGAVRVKRRKGPRRGEDFTLPQALMKADFLLLFFSLVLASGS 151
           ER KRIAHLQAKLFQAAAEGAVRVKR++GPRRGEDFTL QAL+KADF L+F SL+LA+GS
Sbjct: 317 ERHKRIAHLQAKLFQAAAEGAVRVKRKRGPRRGEDFTLMQALIKADFWLIFVSLLLAAGS 376

Query: 152 GLTVIDNLGQICQSLGYADTSIYVSMISIWNFLGRVGGGYFSEAIVRKFAYPRPVAMAVA 211
           GLT+IDN+GQ+C+SLGY+DTS++VSMISIWNFLGRVGGGYFSE+IVR FA+PRPV+MA+ 
Sbjct: 377 GLTIIDNMGQMCESLGYSDTSVFVSMISIWNFLGRVGGGYFSESIVRNFAFPRPVSMAMF 436

Query: 212 QVVMAFALLYYAIGWPGEIYVTTVLVGLSYGAHWAIVPAAASELFGLKSFGALYNFLTLA 271
           QV+M+  LLYYA+ WPG IYV +VL+GL YGAHWAIVPAAASELFGLKSFGALYNFLTL+
Sbjct: 437 QVLMSVGLLYYALAWPGAIYVVSVLIGLGYGAHWAIVPAAASELFGLKSFGALYNFLTLS 496

Query: 272 SPAGSLIFSGVIASGIYDYYAEKQAGLLWKYNGNMLPVSFRDQETPTCLGSICYSITCGI 331
           S  G+LIFS VIASGIYD+YAEKQA L     G M  +     E+ +C G ICYSITCG+
Sbjct: 497 SSIGTLIFSEVIASGIYDHYAEKQAALKQHSLGAMAGLPLGKDESLSCEGYICYSITCGV 556

Query: 332 MAGLCIIAMVMSLIVVHRTKSVYAQLYGN 360
           M+GLC++A+V+SLIVVHRTKSVYA LYG 
Sbjct: 557 MSGLCLVAVVLSLIVVHRTKSVYANLYGR 585

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|147853498|emb|CAN82292.1| hypothetical protein VITISV_016786 [Vitis vinifera]

 Score =  468 bits (1204), Expect = e-129,   Method: Compositional matrix adjust.
 Identities = 241/363 (66%), Positives = 285/363 (78%), Gaps = 3/363 (0%)

Query: 1   MLAVLLLEDLEVANQNVLTVLAVGLIIIILLPVTIPVVLVFFTEPPPPVEETLLAETNKG 60
           ++ V+L++DL   +  V+T+    L ++IL P+ IPV L FF+EP  P  E LL E  K 
Sbjct: 226 LMGVMLVQDLVHLSHTVVTIFTAILFVLILAPIVIPVSLSFFSEPKAPEAEALLTEPQKD 285

Query: 61  EASKSEDYQEEVILSEVEDEKPPEVDSLPASERQKRIAHLQAKLFQAAAEGAVRVKRRKG 120
           E  KSE    EVI SEVEDEKP EVD LPASERQKRIAHLQAKLFQAAAEGAVRVKRR+G
Sbjct: 286 EPGKSEQDATEVIFSEVEDEKPKEVDLLPASERQKRIAHLQAKLFQAAAEGAVRVKRRRG 345

Query: 121 PRRGEDFTLPQALMKADFLLLFFSLVLASGSGLTVIDNLGQICQSLGYADTSIYVSMISI 180
           P RGEDFTL QAL+KADF L+FFSL+L SGSGLTVIDNLGQ+ QSLGY +T I+VSMISI
Sbjct: 346 PHRGEDFTLMQALIKADFWLIFFSLLLGSGSGLTVIDNLGQMSQSLGYHNTHIFVSMISI 405

Query: 181 WNFLGRVGGGYFSEAIVRKFAYPRPVAMAVAQVVMAFALLYYAIGWPGEIYVTTVLVGLS 240
           WNFLGR+GGGYFSE IVR  AYPRPVAMA AQV+MA   L++A+GWPG +++ T+L+GL 
Sbjct: 406 WNFLGRIGGGYFSEMIVRDHAYPRPVAMAAAQVIMALGHLFFAMGWPGAMHIGTLLIGLG 465

Query: 241 YGAHWAIVPAAASELFGLKSFGALYNFLTLASPAGSLIFSGVIASGIYDYYAEKQA---G 297
           YGAHWAIVPAAASELFGLK+FGALYNFLTLA+PAGSL+FSGVIAS IYD  AEKQA    
Sbjct: 466 YGAHWAIVPAAASELFGLKNFGALYNFLTLANPAGSLVFSGVIASSIYDREAEKQAHHHH 525

Query: 298 LLWKYNGNMLPVSFRDQETPTCLGSICYSITCGIMAGLCIIAMVMSLIVVHRTKSVYAQL 357
            L +  G++        + P C GSIC+ +T  IM+GLCIIA+V+S+++VHRTK VYA L
Sbjct: 526 HLQQNVGSIFSGMLSMDDPPKCEGSICFFLTSMIMSGLCIIAVVLSMVLVHRTKIVYANL 585

Query: 358 YGN 360
           YG 
Sbjct: 586 YGK 588

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225451469|ref|XP_002270737.1| PREDICTED: uncharacterized protein LOC100244537 [Vitis vinifera] gi|296082334|emb|CBI21339.3| unnamed protein product [Vitis vinifera]

 Score =  468 bits (1203), Expect = e-129,   Method: Compositional matrix adjust.
 Identities = 241/363 (66%), Positives = 285/363 (78%), Gaps = 3/363 (0%)

Query: 1   MLAVLLLEDLEVANQNVLTVLAVGLIIIILLPVTIPVVLVFFTEPPPPVEETLLAETNKG 60
           ++ V+L++DL   +  V+T+    L ++IL P+ IPV L FF+EP  P  E LL E  K 
Sbjct: 226 LMGVMLVQDLVHLSHTVVTIFTAILFVLILAPIVIPVSLSFFSEPKAPEAEALLTEPQKD 285

Query: 61  EASKSEDYQEEVILSEVEDEKPPEVDSLPASERQKRIAHLQAKLFQAAAEGAVRVKRRKG 120
           E  KSE    EVI SEVEDEKP EVD LPASERQKRIAHLQAKLFQAAAEGAVRVKRR+G
Sbjct: 286 EPGKSEQDATEVIFSEVEDEKPKEVDLLPASERQKRIAHLQAKLFQAAAEGAVRVKRRRG 345

Query: 121 PRRGEDFTLPQALMKADFLLLFFSLVLASGSGLTVIDNLGQICQSLGYADTSIYVSMISI 180
           P RGEDFTL QAL+KADF L+FFSL+L SGSGLTVIDNLGQ+ QSLGY +T I+VSMISI
Sbjct: 346 PHRGEDFTLMQALIKADFWLIFFSLLLGSGSGLTVIDNLGQMSQSLGYHNTHIFVSMISI 405

Query: 181 WNFLGRVGGGYFSEAIVRKFAYPRPVAMAVAQVVMAFALLYYAIGWPGEIYVTTVLVGLS 240
           WNFLGR+GGGYFSE IVR  AYPRPVAMA AQV+MA   L++A+GWPG +++ T+L+GL 
Sbjct: 406 WNFLGRIGGGYFSEMIVRDHAYPRPVAMAAAQVIMALGHLFFAMGWPGAMHIGTLLIGLG 465

Query: 241 YGAHWAIVPAAASELFGLKSFGALYNFLTLASPAGSLIFSGVIASGIYDYYAEKQA---G 297
           YGAHWAIVPAAASELFGLK+FGALYNFLTLA+PAGSL+FSGVIAS IYD  AEKQA    
Sbjct: 466 YGAHWAIVPAAASELFGLKNFGALYNFLTLANPAGSLVFSGVIASSIYDREAEKQAHHHH 525

Query: 298 LLWKYNGNMLPVSFRDQETPTCLGSICYSITCGIMAGLCIIAMVMSLIVVHRTKSVYAQL 357
            L +  G++        + P C GSIC+ +T  IM+GLCIIA+V+S+++VHRTK VYA L
Sbjct: 526 HLQQNVGSIFSGMLSMDDPPKCEGSICFFLTSMIMSGLCIIAVVLSMVLVHRTKIVYANL 585

Query: 358 YGN 360
           YG 
Sbjct: 586 YGK 588

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255536871|ref|XP_002509502.1| conserved hypothetical protein [Ricinus communis] gi|223549401|gb|EEF50889.1| conserved hypothetical protein [Ricinus communis]

 Score =  447 bits (1151), Expect = e-123,   Method: Compositional matrix adjust.
 Identities = 238/361 (65%), Positives = 283/361 (78%), Gaps = 1/361 (0%)

Query: 1   MLAVLLLEDLEVANQNVLTVLAVGLIIIILLPVTIPVVLVFFTEPPPPVEETLLAETNKG 60
           ++ V+LLEDL   +  ++ V  V L +++LLP+ IP+ L FF EP  P EETLL E+ K 
Sbjct: 226 LMGVMLLEDLVDLSHTLIIVFTVVLFVLLLLPIVIPIWLSFFHEPRDPAEETLLPESEKQ 285

Query: 61  EASKSEDYQEEVILSEVEDEKPPEVDSLPASERQKRIAHLQAKLFQAAAEGAVRVKRRKG 120
           EA KSE    EVILSEVEDEKP EVD LPASER+KRIA LQ KLFQAAAEGAVR+KRR+G
Sbjct: 286 EAGKSEQDGHEVILSEVEDEKPKEVDLLPASERKKRIAQLQTKLFQAAAEGAVRIKRRRG 345

Query: 121 PRRGEDFTLPQALMKADFLLLFFSLVLASGSGLTVIDNLGQICQSLGYADTSIYVSMISI 180
           P RGEDFTL QAL+KADF L+F SL+L SGSGLTVIDNLGQ+ QSLGY +T I+VSMISI
Sbjct: 346 PHRGEDFTLMQALIKADFWLIFVSLLLGSGSGLTVIDNLGQMSQSLGYDNTHIFVSMISI 405

Query: 181 WNFLGRVGGGYFSEAIVRKFAYPRPVAMAVAQVVMAFALLYYAIGWPGEIYVTTVLVGLS 240
           WNFLGRVGGGYFSE IVR +AYPRP+AMAVAQ VMA   +++A  WPG +Y+ T+L+GL 
Sbjct: 406 WNFLGRVGGGYFSEIIVRDYAYPRPIAMAVAQFVMAIGHVFFAFDWPGTMYIGTLLIGLG 465

Query: 241 YGAHWAIVPAAASELFGLKSFGALYNFLTLASPAGSLIFSGVIASGIYDYYAEKQAG-LL 299
           YGAHWAIVPAAASELFGLK FGALYNFLTLA+PAGSL+FSG+IAS IYD  AE+QA    
Sbjct: 466 YGAHWAIVPAAASELFGLKKFGALYNFLTLANPAGSLVFSGLIASRIYDREAERQAHEHH 525

Query: 300 WKYNGNMLPVSFRDQETPTCLGSICYSITCGIMAGLCIIAMVMSLIVVHRTKSVYAQLYG 359
            +  G++    F   E   C G++CY +T  IM+G CIIA+++SLI+VHRTK VYA LYG
Sbjct: 526 MRTAGSLFSGLFGPDEPLKCEGAVCYFLTSMIMSGFCIIAVILSLILVHRTKIVYANLYG 585

Query: 360 N 360
            
Sbjct: 586 K 586

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|312282435|dbj|BAJ34083.1| unnamed protein product [Thellungiella halophila]

 Score =  432 bits (1112), Expect = e-119,   Method: Compositional matrix adjust.
 Identities = 223/363 (61%), Positives = 278/363 (76%), Gaps = 16/363 (4%)

Query: 1   MLAVLLLEDLEVANQNVLTVLAVGLIIIILLPVTIPVVLVFFTE---PPPPVEETLLAET 57
           ++AV+L+EDL V + N++TV  + L +I+++P+ +P++  FFTE   P   VEE L+ + 
Sbjct: 227 LMAVMLIEDLVVVSHNIITVFTIVLFVILVVPILVPIMTSFFTESNAPADTVEEPLVPKR 286

Query: 58  NKGEASKSEDYQEEVILSEVEDEKPPEVDSLPASERQKRIAHLQAKLFQAAAEGAVRVKR 117
              E  +      ++ILSEVEDEKP E+D LPASER KRIAHLQA+L QAAAEGAVRVKR
Sbjct: 287 ENQEPGQQ---TPDLILSEVEDEKPKEMDLLPASERHKRIAHLQARLMQAAAEGAVRVKR 343

Query: 118 RKGPRRGEDFTLPQALMKADFLLLFFSLVLASGSGLTVIDNLGQICQSLGYADTSIYVSM 177
            +GP RGEDFTL QAL+KADF L+FFSL+L SGSGLTVIDNLGQ+ QSLGY +T ++VSM
Sbjct: 344 HRGPHRGEDFTLTQALVKADFWLIFFSLLLGSGSGLTVIDNLGQMSQSLGYDNTHVFVSM 403

Query: 178 ISIWNFLGRVGGGYFSEAIVRKFAYPRPVAMAVAQVVMAFALLYYAIGWPGEIYVTTVLV 237
           ISIWNFLGR+GGGYFSE IVR +AYPRPVAMAVAQ+VM+   +++A GWPG +Y+ T+L+
Sbjct: 404 ISIWNFLGRIGGGYFSELIVRDYAYPRPVAMAVAQLVMSVGHVFFAFGWPGAMYIGTLLI 463

Query: 238 GLSYGAHWAIVPAAASELFGLKSFGALYNFLTLASPAGSLIFSGVIASGIYDYYAEKQAG 297
           GL YGAHWAIVPA ASELFGLK FGALYNFLTLA+PAGSL+FSG+IAS IYD  AE+QA 
Sbjct: 464 GLGYGAHWAIVPATASELFGLKKFGALYNFLTLANPAGSLVFSGLIASTIYDREAERQAH 523

Query: 298 LLWKYNGNMLPVSFRDQETPTCLGSICYSITCGIMAGLCIIAMVMSLIVVHRTKSVYAQL 357
           +            F   +   C G ICY +T  IM+G CIIA ++S+I+V RTKSVY+ L
Sbjct: 524 V----------SVFDPDDALRCEGYICYFLTSLIMSGFCIIACILSMILVRRTKSVYSHL 573

Query: 358 YGN 360
           YG 
Sbjct: 574 YGK 576

Source: Thellungiella halophila

Species: Eutrema halophilum

Genus: Eutrema

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225451471|ref|XP_002270809.1| PREDICTED: uncharacterized protein LOC100266857 [Vitis vinifera] gi|296082332|emb|CBI21337.3| unnamed protein product [Vitis vinifera]

 Score =  431 bits (1109), Expect = e-118,   Method: Compositional matrix adjust.
 Identities = 238/363 (65%), Positives = 283/363 (77%), Gaps = 3/363 (0%)

Query: 1   MLAVLLLEDLEVANQNVLTVLAVGLIIIILLPVTIPVVLVFFTEPPPPVEETLLAETNKG 60
           ++ V+LL+DL   +  V+T+    L +++L+P+ IPV L F +EP  P  E LL E  K 
Sbjct: 226 LMGVMLLQDLVDLSHTVVTIFTAILFVLVLVPIVIPVSLSFPSEPKAPELEALLTEPQKE 285

Query: 61  EASKSEDYQEEVILSEVEDEKPPEVDSLPASERQKRIAHLQAKLFQAAAEGAVRVKRRKG 120
           E  KSE    EVI SE+EDEKP EVD LPASERQKRIAHLQAKLFQAAAEGAVRVKRR+G
Sbjct: 286 EPGKSEQDATEVIFSELEDEKPKEVDLLPASERQKRIAHLQAKLFQAAAEGAVRVKRRRG 345

Query: 121 PRRGEDFTLPQALMKADFLLLFFSLVLASGSGLTVIDNLGQICQSLGYADTSIYVSMISI 180
           PRRGEDFTL QAL+KADF L+FFSL+L SGSGLTVIDNLGQ+ QSLGY +T I+VSMISI
Sbjct: 346 PRRGEDFTLMQALIKADFWLIFFSLLLGSGSGLTVIDNLGQMSQSLGYDNTHIFVSMISI 405

Query: 181 WNFLGRVGGGYFSEAIVRKFAYPRPVAMAVAQVVMAFALLYYAIGWPGEIYVTTVLVGLS 240
           WNFLGR+GGGYFSE IVR +AYPRPVAMAVAQV MA   L++A+GWPG +Y+ T+L+GL 
Sbjct: 406 WNFLGRIGGGYFSEMIVRDYAYPRPVAMAVAQVTMALGHLFFAMGWPGSLYIGTLLIGLG 465

Query: 241 YGAHWAIVPAAASELFGLKSFGALYNFLTLASPAGSLIFSGVIASGIYDYYAEKQAGLLW 300
           YGAHWAIVPAAASELFGLK+FGALYNF+ LA+P GSL+FSGVIAS IYD  AEKQA    
Sbjct: 466 YGAHWAIVPAAASELFGLKNFGALYNFINLANPTGSLVFSGVIASSIYDREAEKQAHHHH 525

Query: 301 KYNGNMLPV---SFRDQETPTCLGSICYSITCGIMAGLCIIAMVMSLIVVHRTKSVYAQL 357
               NM  +        + P C GSIC+ +T  IM+G+CIIA+V+S+++VHRTK VYA L
Sbjct: 526 HQQQNMGSIFSGMLSVDDPPKCEGSICFFLTSMIMSGICIIAVVLSMVLVHRTKVVYANL 585

Query: 358 YGN 360
           YG 
Sbjct: 586 YGK 588

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297807437|ref|XP_002871602.1| nodulin family protein [Arabidopsis lyrata subsp. lyrata] gi|297317439|gb|EFH47861.1| nodulin family protein [Arabidopsis lyrata subsp. lyrata]

 Score =  429 bits (1102), Expect = e-117,   Method: Compositional matrix adjust.
 Identities = 220/363 (60%), Positives = 280/363 (77%), Gaps = 16/363 (4%)

Query: 1   MLAVLLLEDLEVANQNVLTVLAVGLIIIILLPVTIPVVLVFFTE---PPPPVEETLLAET 57
           ++AV+L++DL V + NV+T+  + L +I+++P+ +P++  FFTE   P   +EE L+ + 
Sbjct: 227 LMAVMLIQDLVVVSHNVITMFTIVLFVILVVPILVPIMTSFFTETNEPDDTIEEPLVPKR 286

Query: 58  NKGEASKSEDYQEEVILSEVEDEKPPEVDSLPASERQKRIAHLQAKLFQAAAEGAVRVKR 117
              E         ++ILSEVEDEKP +VD LPASER KRIAHLQA+L QAAAEGAVRVKR
Sbjct: 287 EDQEPGMQT---PDLILSEVEDEKPKDVDLLPASERHKRIAHLQAQLMQAAAEGAVRVKR 343

Query: 118 RKGPRRGEDFTLPQALMKADFLLLFFSLVLASGSGLTVIDNLGQICQSLGYADTSIYVSM 177
           R+GP RGEDFTL QAL+KADF L+FFSL+L SGSGLTVIDNLGQ+ QSLGY +T + VSM
Sbjct: 344 RRGPHRGEDFTLTQALVKADFWLIFFSLLLGSGSGLTVIDNLGQMSQSLGYDNTHVLVSM 403

Query: 178 ISIWNFLGRVGGGYFSEAIVRKFAYPRPVAMAVAQVVMAFALLYYAIGWPGEIYVTTVLV 237
           ISIWNFLGR+GGGYFSE +VR +AYPRPVAMAVAQ++M+   +++A GWPG +Y+ T+L+
Sbjct: 404 ISIWNFLGRIGGGYFSELVVRDYAYPRPVAMAVAQLIMSVGHIFFAYGWPGAMYIGTLLI 463

Query: 238 GLSYGAHWAIVPAAASELFGLKSFGALYNFLTLASPAGSLIFSGVIASGIYDYYAEKQAG 297
           GL YGAHWAIVPA ASELFGLK FGALYNFLTLA+PAGSL+FSG+IAS IYD  AE+QA 
Sbjct: 464 GLGYGAHWAIVPATASELFGLKKFGALYNFLTLANPAGSLVFSGMIASSIYDREAERQA- 522

Query: 298 LLWKYNGNMLPVSFRDQETPTCLGSICYSITCGIMAGLCIIAMVMSLIVVHRTKSVYAQL 357
                +G++    F   +   C GSIC+ +T  +M+G CIIA ++S+I+V RTKSVY  L
Sbjct: 523 -----HGSV----FDPDDALRCNGSICFFLTSLVMSGFCIIACILSMILVRRTKSVYTHL 573

Query: 358 YGN 360
           YG 
Sbjct: 574 YGK 576

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	366
TAIR|locus:2174683	579	AT5G14120 [Arabidopsis thalian	0.762	0.481	0.584	1.7e-84
TAIR|locus:2078643	584	AT3G01930 [Arabidopsis thalian	0.784	0.491	0.572	2.2e-82
TAIR|locus:2159752	540	AT5G50520 [Arabidopsis thalian	0.622	0.422	0.525	2.6e-63
TAIR|locus:2832385	540	AT5G50630 [Arabidopsis thalian	0.622	0.422	0.525	2.6e-63
TAIR|locus:2056103	601	AT2G39210 "AT2G39210" [Arabido	0.617	0.376	0.354	3.8e-33
TAIR|locus:2046238	577	AT2G28120 [Arabidopsis thalian	0.633	0.402	0.345	3.1e-31
TAIR|locus:2198938	561	AT1G80530 "AT1G80530" [Arabido	0.519	0.338	0.352	4.6e-30
TAIR|locus:2116855	567	AT4G34950 [Arabidopsis thalian	0.472	0.305	0.381	7.8e-28
TAIR|locus:2059829	546	AT2G16660 [Arabidopsis thalian	0.472	0.316	0.369	1.4e-26
TAIR|locus:2027284	533	AT1G74780 [Arabidopsis thalian	0.505	0.347	0.354	2.7e-26

TAIR|locus:2174683 AT5G14120 [Arabidopsis thaliana (taxid:3702)]

 Score = 827 (296.2 bits), Expect = 1.7e-84, Sum P(2) = 1.7e-84
 Identities = 169/289 (58%), Positives = 202/289 (69%)

Query:    71 EVILSEVEDEKPPEVDSLPASERQKRIAHLQAKLFQAAAEGAXXXXXXXXXXXXEDFTLP 130
             ++ILSEVEDEKP +VD LPASER KRIAHLQA+L QAAAEGA            EDFTL 
Sbjct:   297 DLILSEVEDEKPKDVDLLPASERHKRIAHLQAQLMQAAAEGAVRVNRRRGPHRGEDFTLT 356

Query:   131 QALMKADXXXXXXXXXXXXXXXXTVIDNLGQICQSLGYADTSIYVSMISIWNFLGRVGGG 190
             QAL+KAD                TVIDNLGQ+ QSLGY +T + VSMISIWNFLGR+GGG
Sbjct:   357 QALVKADFWLIFFSLLLGSGSGLTVIDNLGQMSQSLGYDNTHVLVSMISIWNFLGRIGGG 416

Query:   191 YFSEAIVRKFAYPRPXXXXXXXXXXXFALLYYAIGWPGEIYVTTVLVGLSYGAHWAIVPA 250
             YFSE +VR +AYPRP              +++A GWPG +Y+ T+L+GL YGAHWAIVPA
Sbjct:   417 YFSELVVRDYAYPRPVAMAVAQLIMSVGHIFFAYGWPGAMYIGTLLIGLGYGAHWAIVPA 476

Query:   251 AASELFGLKSFGALYNFLTLASPAGSLIFSGVIASGIYDYYAEKQAGLLWKYNGNMLPVS 310
              ASELFGLK FGALYNFLTLA+PAGSL+FSG+IAS IYD  AE+QA      +G++    
Sbjct:   477 TASELFGLKKFGALYNFLTLANPAGSLVFSGMIASSIYDREAERQA------HGSV---- 526

Query:   311 FRDQETPTCLGSICYSITCGIMAGLCIIAMVMSLIVVHRTKSVYAQLYG 359
             F   +   C GSIC+ +T  IM+G CIIA ++S+I+V RTKSVY  LYG
Sbjct:   527 FDPDDALRCNGSICFFLTSLIMSGFCIIACMLSMILVRRTKSVYTHLYG 575

GO:0005773 "vacuole" evidence=IDA

GO:0005774 "vacuolar membrane" evidence=IDA

GO:0010167 "response to nitrate" evidence=RCA

GO:0015706 "nitrate transport" evidence=RCA

GO:0019344 "cysteine biosynthetic process" evidence=RCA

TAIR|locus:2078643 AT3G01930 [Arabidopsis thaliana (taxid:3702)]

 Score = 826 (295.8 bits), Expect = 2.2e-82, P = 2.2e-82
 Identities = 170/297 (57%), Positives = 201/297 (67%)

Query:    63 SKSEDYQEEVILSEVEDEKPPEVDSLPASERQKRIAHLQAKLFQAAAEGAXXXXXXXXXX 122
             S + D+  E+I SEVEDEKP EVD LPA ER KRIA LQAKL QAAAEGA          
Sbjct:   294 STTPDHGPELIFSEVEDEKPKEVDLLPAVERHKRIAQLQAKLMQAAAEGAVRVKRRRGPH 353

Query:   123 XXEDFTLPQALMKADXXXXXXXXXXXXXXXXTVIDNLGQICQSLGYADTSIYVSMISIWN 182
               EDFTL QAL+KAD                TVIDNLGQ+ QSLGY +T ++VSMISIWN
Sbjct:   354 RGEDFTLTQALVKADFWLIFFSLLLGSGSGLTVIDNLGQMSQSLGYDNTHVFVSMISIWN 413

Query:   183 FLGRVGGGYFSEAIVRKFAYPRPXXXXXXXXXXXFALLYYAIGWPGEIYVTTVLVGLSYG 242
             FLGR+GGGYFSE IVR +AYPRP              +++A GWPG +++ T+L+GL YG
Sbjct:   414 FLGRIGGGYFSELIVRDYAYPRPVAIAVAQLVMSVGHIFFAYGWPGAMHIGTLLIGLGYG 473

Query:   243 AHWAIVPAAASELFGLKSFGALYNFLTLASPAGSLIFSGVIASGIYDYYAEKQAGLLWKY 302
             AHWAIVPA ASELFGLK FGALYNFLTLA+PAGSL+FSG+IAS IYD  AE+QA      
Sbjct:   474 AHWAIVPATASELFGLKKFGALYNFLTLANPAGSLVFSGLIASSIYDREAERQA------ 527

Query:   303 NGNMLPVSFRDQETPTCLGSICYSITCGIMAGLCIIAMVMSLIVVHRTKSVYAQLYG 359
              G++    F   +   C GSICY +T  IM+G C+IA  +S+I+V RTK VY  LYG
Sbjct:   528 QGSL----FNPDDVLRCRGSICYFLTSLIMSGFCLIAAALSMILVQRTKPVYTNLYG 580

GO:0005886 "plasma membrane" evidence=ISM

TAIR|locus:2159752 AT5G50520 [Arabidopsis thaliana (taxid:3702)]

 Score = 646 (232.5 bits), Expect = 2.6e-63, P = 2.6e-63
 Identities = 126/240 (52%), Positives = 163/240 (67%)

Query:   125 EDFTLPQALMKADXXXXXXXXXXXXXXXXTVIDNLGQICQSLGYADTSIYVSMISIWNFL 184
             EDFTL QAL +AD                T+IDNLGQIC SLGY++T I+VS+ISI NFL
Sbjct:   313 EDFTLLQALGQADFWLIFMSLVLGVGSGITIIDNLGQICYSLGYSNTKIFVSLISISNFL 372

Query:   185 GRVGGGYFSEAIVRKFAYPRPXXXXXXXXXXXFALLYYAIGWPGEIYVTTVLVGLSYGAH 244
             GRV GGYFSE I+RK + PR              L+YYAI WPG+IYV T+++G+ YGAH
Sbjct:   373 GRVAGGYFSELIIRKLSLPRTLAMSVVQAIMSLGLIYYAIDWPGKIYVVTIVIGMGYGAH 432

Query:   245 WAIVPAAASELFGLKSFGALYNFLTLASPAGSLIFSGVIASGIYDYYAEKQAGLLWKYNG 304
             WAI PA+ S++FGLKSFG+LYNF   A P GS +FSGVIAS IYDYYA KQAG       
Sbjct:   433 WAIAPASVSDIFGLKSFGSLYNFQITALPIGSFVFSGVIASNIYDYYARKQAG------- 485

Query:   305 NMLPVSFRDQETPTCLGSICYSITCGIMAGLCIIAMVMSLIVVHRTKSVYAQLYGNLNRS 364
                P +  + E+  C GS+CYS+TC +M+ LC++AMV+SL VV+RT+  Y +L+  ++++
Sbjct:   486 ---PTT--ETESLVCTGSVCYSVTCSLMSMLCLMAMVLSLSVVYRTRKFYLRLHHRVSKT 540

GO:0005576 "extracellular region" evidence=ISM

TAIR|locus:2832385 AT5G50630 [Arabidopsis thaliana (taxid:3702)]

 Score = 646 (232.5 bits), Expect = 2.6e-63, P = 2.6e-63
 Identities = 126/240 (52%), Positives = 163/240 (67%)

Query:   125 EDFTLPQALMKADXXXXXXXXXXXXXXXXTVIDNLGQICQSLGYADTSIYVSMISIWNFL 184
             EDFTL QAL +AD                T+IDNLGQIC SLGY++T I+VS+ISI NFL
Sbjct:   313 EDFTLLQALGQADFWLIFMSLVLGVGSGITIIDNLGQICYSLGYSNTKIFVSLISISNFL 372

Query:   185 GRVGGGYFSEAIVRKFAYPRPXXXXXXXXXXXFALLYYAIGWPGEIYVTTVLVGLSYGAH 244
             GRV GGYFSE I+RK + PR              L+YYAI WPG+IYV T+++G+ YGAH
Sbjct:   373 GRVAGGYFSELIIRKLSLPRTLAMSVVQAIMSLGLIYYAIDWPGKIYVVTIVIGMGYGAH 432

Query:   245 WAIVPAAASELFGLKSFGALYNFLTLASPAGSLIFSGVIASGIYDYYAEKQAGLLWKYNG 304
             WAI PA+ S++FGLKSFG+LYNF   A P GS +FSGVIAS IYDYYA KQAG       
Sbjct:   433 WAIAPASVSDIFGLKSFGSLYNFQITALPIGSFVFSGVIASNIYDYYARKQAG------- 485

Query:   305 NMLPVSFRDQETPTCLGSICYSITCGIMAGLCIIAMVMSLIVVHRTKSVYAQLYGNLNRS 364
                P +  + E+  C GS+CYS+TC +M+ LC++AMV+SL VV+RT+  Y +L+  ++++
Sbjct:   486 ---PTT--ETESLVCTGSVCYSVTCSLMSMLCLMAMVLSLSVVYRTRKFYLRLHHRVSKT 540

GO:0005576 "extracellular region" evidence=ISM

TAIR|locus:2056103 AT2G39210 "AT2G39210" [Arabidopsis thaliana (taxid:3702)]

 Score = 366 (133.9 bits), Expect = 3.8e-33, P = 3.8e-33
 Identities = 84/237 (35%), Positives = 127/237 (53%)

Query:   125 EDFTLPQALMKADXXXXXXXXXXXXXXXXTVIDNLGQICQSLGYADTSI--YVSMISIWN 182
             +D+T+ QAL   D                T IDNLGQI  SLGY   S+  +VS++SIWN
Sbjct:   332 DDYTILQALFSVDMLILFLATICGVGGTLTAIDNLGQIGNSLGYPKRSVSTFVSLVSIWN 391

Query:   183 FLGRVGGGYFSEAIVRKFAYPRPXXXXXXXXXXXFALLYYAIGWPGEIYVTTVLVGLSYG 242
             + GRV  G  SE  + K+ +PRP              L  A   PG +YV +V++G  +G
Sbjct:   392 YYGRVVSGVVSEIFLIKYKFPRPLMLTMVLLLSCAGHLLIAFNVPGGLYVASVIIGFCFG 451

Query:   243 AHWAIVPAAASELFGLKSFGALYNFLTLASPAGSLIFSGVIASGIYDYYAEKQAGLLWKY 302
             A W ++ A  SE+FGLK +  LYNF ++ASP GS + +  +A  +YD  A KQ   L K 
Sbjct:   452 AQWPLLFAIISEIFGLKYYSTLYNFGSVASPIGSYLLNVRVAGYLYDVEAGKQYKALGKT 511

Query:   303 NGNMLPVSFRDQETPTCLGSICYSITCGIMAGLCIIAMVMSLIVVHRTKSVY-AQLY 358
                   V  +D     C+G+ C+ ++  I+A + +  +++S+++V RTK  Y + +Y
Sbjct:   512 R-----VEGQDLN---CIGTSCFKLSFIIIAAVTLFGVLVSMVLVIRTKKFYKSDIY 560

GO:0003674 "molecular_function" evidence=ND

GO:0009507 "chloroplast" evidence=ISM

GO:0055085 "transmembrane transport" evidence=IEA

GO:0009506 "plasmodesma" evidence=IDA

GO:0050832 "defense response to fungus" evidence=IEP

GO:0006865 "amino acid transport" evidence=RCA

GO:0006888 "ER to Golgi vesicle-mediated transport" evidence=RCA

GO:0009627 "systemic acquired resistance" evidence=RCA

GO:0034976 "response to endoplasmic reticulum stress" evidence=RCA

GO:0043090 "amino acid import" evidence=RCA

TAIR|locus:2046238 AT2G28120 [Arabidopsis thaliana (taxid:3702)]

 Score = 348 (127.6 bits), Expect = 3.1e-31, P = 3.1e-31
 Identities = 84/243 (34%), Positives = 125/243 (51%)

Query:   125 EDFTLPQALMKADXXXXXXXXXXXXXXXXTVIDNLGQICQSLGYADTSI--YVSMISIWN 182
             ED+T+ QAL+  D                T +DNLGQI +SLGY + ++  +VS++SIWN
Sbjct:   323 EDYTILQALLSTDMIILFVATFCGLGSSLTAVDNLGQIGESLGYPNHTVSSFVSLVSIWN 382

Query:   183 FLGRVGGGYFSEAIVRKFAYPRPXXXXXXXXXXXFALLYYAIGWPGEIYVTTVLVGLSYG 242
             + GRV  G+ SE ++ K+  PRP              L  A   PG +Y+ ++L+G S+G
Sbjct:   383 YFGRVFSGFVSEYLLAKYKLPRPLMMTLVLLLSCAGHLLIAFPVPGSVYIASILMGFSFG 442

Query:   243 AHWAIVPAAASELFGLKSFGALYNFLTLASPAGSLIFSGVIASGIYDYYAEKQAGLLWKY 302
             A   ++ A  SELFGLK +  L+N   LASP GS I +  +   +YD  A KQ       
Sbjct:   443 AQLPLLFAIISELFGLKYYSTLFNCGQLASPLGSYILNVRVTGMLYDKEALKQLTA---- 498

Query:   303 NGNMLPVSFRDQETPTCLGSICYSITCGIMAGLCIIAMVMSLIVVHRTKSVY-AQLYGNL 361
              G    ++ +D +  TCLGS CY +   I+A +     ++SL +  RT+  Y   +Y   
Sbjct:   499 RG----LTRKDVKDLTCLGSQCYKLPFLILAAVTFFGALVSLGLAIRTREFYKGDIYKKF 554

Query:   362 NRS 364
               S
Sbjct:   555 RES 557

GO:0016021 "integral to membrane" evidence=IEA

GO:0055085 "transmembrane transport" evidence=IEA

GO:0005886 "plasma membrane" evidence=IDA

TAIR|locus:2198938 AT1G80530 "AT1G80530" [Arabidopsis thaliana (taxid:3702)]

 Score = 272 (100.8 bits), Expect = 4.6e-30, Sum P(2) = 4.6e-30
 Identities = 68/193 (35%), Positives = 93/193 (48%)

Query:   103 KLFQAAAEGAXXXXXXXXXXXXEDFTLPQALMKADXXXXXXXXXXXXXXXXTVIDNLGQI 162
             ++  A AEGA            EDF   Q  +KAD                TV +NL QI
Sbjct:   314 EILLAEAEGAVKKKRKPRRG--EDFKFGQVFVKADFWLLWFVYFLGMGSGVTVSNNLAQI 371

Query:   163 CQSLGYADTSIYVSMISIWNFLGRVGGGYFSEAIVRKFAYPRPXXXXXXXXXXXFALLYY 222
               + G  DT+I + + S +NF+GR+  G  SE  VR    PR            F  L +
Sbjct:   372 GFAFGIKDTTILLCLFSFFNFIGRLASGAISEHFVRSRTLPRTLWMGAAQLVMVFTFLLF 431

Query:   223 AIGWPGEIYVTTVLVGLSYGAHWAIVPAAASELFGLKSFGALYNFLTLASPAGSLIFSGV 282
             A+     IYV T L+G+  G  +  + A  SELFGL+ FG  +NF+ L +P G+ IFS +
Sbjct:   432 AMAIDHTIYVATALIGICMGFQFLSI-ATISELFGLRHFGINFNFILLGNPLGATIFSAI 490

Query:   283 IASGIYDYYAEKQ 295
             +A  IYD  A+KQ
Sbjct:   491 LAGYIYDKEADKQ 503

GO:0003674 "molecular_function" evidence=ND

GO:0005634 "nucleus" evidence=IDA

GO:0080167 "response to karrikin" evidence=IEP

TAIR|locus:2116855 AT4G34950 [Arabidopsis thaliana (taxid:3702)]

 Score = 317 (116.6 bits), Expect = 7.8e-28, P = 7.8e-28
 Identities = 66/173 (38%), Positives = 92/173 (53%)

Query:   125 EDFTLPQALMKADXXXXXXXXXXXXXXXXTVIDNLGQICQSLGYADTSIYVSMISIWNFL 184
             E+ T+ +A++  D                 V++N+GQI  +LGY D SI+VSM SIW F 
Sbjct:   338 EEHTIMEAMLTVDFWVLFVSFLCGVGTGLAVMNNMGQIGLALGYTDVSIFVSMTSIWGFF 397

Query:   185 GRVGGGYFSEAIVRKFAYPRPXXXXXXXXXXXFALLYYAIGWPGEIYVTTVLVGLSYGAH 244
             GR+  G  SE  ++K   PRP              L  A+  PG +Y+ +++VG+ YG  
Sbjct:   398 GRILSGTISEHFIKKAGTPRPLWNAAAQIIMAVGYLLMALALPGSLYIGSMVVGVCYGVR 457

Query:   245 WAIVPAAASELFGLKSFGALYNFLTLASPAGSLIFSGVIASGIYDYYAEKQAG 297
              AI    ASELFGLK +G +YN L L  P GS +FSG++A  +YD  A    G
Sbjct:   458 LAITVPTASELFGLKYYGLIYNILILNMPLGSFLFSGLLAGLLYDAEATPTPG 510

GO:0009507 "chloroplast" evidence=ISM

GO:0007623 "circadian rhythm" evidence=RCA

GO:0019761 "glucosinolate biosynthetic process" evidence=RCA

TAIR|locus:2059829 AT2G16660 [Arabidopsis thaliana (taxid:3702)]

 Score = 305 (112.4 bits), Expect = 1.4e-26, P = 1.4e-26
 Identities = 64/173 (36%), Positives = 91/173 (52%)

Query:   125 EDFTLPQALMKADXXXXXXXXXXXXXXXXTVIDNLGQICQSLGYADTSIYVSMISIWNFL 184
             ED T+ +A++  D                 V++N+GQI  +LGY + SI+VSM SIW F 
Sbjct:   317 EDHTIMEAVLTVDFWVLFVSFLCGVGTGLAVMNNMGQIGLALGYTNVSIFVSMTSIWGFF 376

Query:   185 GRVGGGYFSEAIVRKFAYPRPXXXXXXXXXXXFALLYYAIGWPGEIYVTTVLVGLSYGAH 244
             GR+  G  SE  ++K   PRP              +  A+  P  +Y+ +++VG+ YG  
Sbjct:   377 GRILSGTLSEYFLKKAGTPRPLWNAASQILMAVGYILMALAVPNSLYIGSMVVGVCYGVR 436

Query:   245 WAIVPAAASELFGLKSFGALYNFLTLASPAGSLIFSGVIASGIYDYYAEKQAG 297
              AI    ASELFGLK +G +YN L L  P GS +FSG++A  +YD  A    G
Sbjct:   437 LAITVPTASELFGLKYYGLIYNILVLNLPLGSFLFSGLLAGFLYDAEATPTPG 489

GO:0009507 "chloroplast" evidence=ISM

GO:0080167 "response to karrikin" evidence=IEP

TAIR|locus:2027284 AT1G74780 [Arabidopsis thaliana (taxid:3702)]

 Score = 302 (111.4 bits), Expect = 2.7e-26, P = 2.7e-26
 Identities = 67/189 (35%), Positives = 99/189 (52%)

Query:   125 EDFTLPQALMKADXXXXXXXXXXXXXXXXTVIDNLGQICQSLGYADTSI--YVSMISIWN 182
             E+  L QA+ K                  + I+N+ QI +SL Y+   I   VS+ SIWN
Sbjct:   311 ENLNLLQAMKKLSFWLLFLAMICGMGSGLSTINNIRQIGESLRYSSVEINSLVSLWSIWN 370

Query:   183 FLGRVGGGYFSEAIVRKFAYPRPXXXXXXXXXXXFALLYYAIGWPGEIYVTTVLVGLSYG 242
             FLGR G GY S+A++ K  +PRP              L  A G+ G +YV +V+VG+ YG
Sbjct:   371 FLGRFGAGYASDALLHKKGWPRPLLMAATLGTMSIGHLIIASGFQGNLYVGSVIVGVCYG 430

Query:   243 AHWAIVPAAASELFGLKSFGALYNFLTLASPAGSLIFSGVIASGIYDYYAEKQAGLLWKY 302
             + W+++P   SELFG++  G ++N +++ASP GS IFS  +   IYD  A  +      Y
Sbjct:   431 SQWSLMPTITSELFGIRHMGTIFNTISVASPIGSYIFSVRLIGYIYDKTASGEGNTC--Y 488

Query:   303 NGNMLPVSF 311
               +   +SF
Sbjct:   489 GSHCFRLSF 497

GO:0016021 "integral to membrane" evidence=IEA

GO:0055085 "transmembrane transport" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	366
TIGR00890	377	TIGR00890, 2A0111, oxalate/formate antiporter fami	1e-14
TIGR04259	405	TIGR04259, oxa_formateAnti, oxalate/formate antipo	5e-05
cd06174	352	cd06174, MFS, The Major Facilitator Superfamily (M	1e-04
cd06174	352	cd06174, MFS, The Major Facilitator Superfamily (M	5e-04

>gnl|CDD|233171 TIGR00890, 2A0111, oxalate/formate antiporter family transporter

 Score = 74.0 bits (182), Expect = 1e-14
 Identities = 50/172 (29%), Positives = 77/172 (44%), Gaps = 6/172 (3%)

Query: 122 RRGEDFTLPQALMKADFLLLFFSLVLASGSGLTVIDNLGQICQSLGYADT--SIYVSMIS 179
              +D+T+ + L    F +L+ S  L + SGL +I       QSLG +D    + VS+ S
Sbjct: 191 VSVKDYTVWEMLRTPQFWVLYLSFFLNAVSGLLLIGLYKPYGQSLGLSDGFLVLAVSISS 250

Query: 180 IWNFLGRVGGGYFSEAIVRKFAYPRPVAMAVAQVVMAFALLYYAIGWPGEIYVTTVLVGL 239
           I+N  GR   G  S+ I R+      +   ++ V MA  L    +        T  LV  
Sbjct: 251 IFNGGGRPFLGALSDKIGRQKTM--SIVFGISAVGMAAMLFIPMLN-DVLFLATVALVFF 307

Query: 240 SYGAHWAIVPAAASELFGLKSFGALYNFLTLASPAGSLIFSGVIASGIYDYY 291
           ++G   ++ P+  S++FG  +  A Y FL  A      IF G+IAS      
Sbjct: 308 TWGGTISLFPSLVSDIFGPANSAANYGFLYTAKAVAG-IFGGLIASHALTEI 358

This subfamily belongs to the major facilitator family. Members include the oxalate/formate antiporter of Oxalobacter formigenes, where one substrate is decarboxylated in the cytosol into the other to consume a proton and drive an ion gradient [Transport and binding proteins, Carbohydrates, organic alcohols, and acids]. Length = 377

>gnl|CDD|234525 TIGR04259, oxa_formateAnti, oxalate/formate antiporter

 Score = 44.4 bits (105), Expect = 5e-05
 Identities = 38/167 (22%), Positives = 65/167 (38%), Gaps = 20/167 (11%)

Query: 126 DFTLPQALMKADFLLLFFSLVLASGSGLTVIDNLGQICQSLGYADT------------SI 173
           DF+  + L    F +++   V+ +  GL     LG I +  G AD             + 
Sbjct: 197 DFSPGEMLRTPVFWVMYTMFVMVAAGGLMATAQLGPIAKDFGVADVPVTLLGLTMAALTF 256

Query: 174 YVSMISIWNFLGRVGGGYFSEAIVRKFAYPRPVAMAVAQVVMAFAL-LYYAIGW-PGEIY 231
            +S+  I N   R   G+ S+ I R+        M VA  +    + L    G  P    
Sbjct: 257 ALSIDRILNGFTRPFFGWISDKIGRE------NTMFVAFGIEGVGIYLLPTFGHNPVAFV 310

Query: 232 VTTVLVGLSYGAHWAIVPAAASELFGLKSFGALYNFLTLASPAGSLI 278
           + + LV  ++G  +++ PA  ++ FG K        L  A    +L+
Sbjct: 311 ILSALVFFAWGEIYSLFPATCADTFGSKYAATNAGLLYTAKGTAALL 357

This model represents a subgroup of the more broadly defined model TIGR00890, which in turn belongs to the Major Facilitator transporter family. Seed members for this family include the known oxalate/formate antiporter of Oxalobacter formigenes, as well as transporter subunits co-clustered with the two genes of a system that decarboxylates oxalate into formate. In many of these cassettes, two subunits are found rather than one, suggesting the antiporter is sometimes homodimeric, sometimes heterodimeric. Length = 405

>gnl|CDD|119392 cd06174, MFS, The Major Facilitator Superfamily (MFS) is a large and diverse group of secondary transporters that includes uniporters, symporters, and antiporters

 Score = 43.1 bits (102), Expect = 1e-04
 Identities = 34/210 (16%), Positives = 63/210 (30%), Gaps = 34/210 (16%)

Query: 138 FLLLFFSLVLASGSGLTVIDNLGQICQSLGYADTSIYVSMISIWNFLGRVGGGYFSEAIV 197
            LLL  +  L S     ++  L    Q +     +    ++     LG + G      + 
Sbjct: 177 LLLLALAFFLLSFGYYGLLTYLPLYLQEVLGLSAA-EAGLLLSLFGLGGILGALLGGLLS 235

Query: 198 RKFAYPRPVAMAVAQVVMAFALLYYAIGWPGEIYVTTVLVGLSYGAHWAIVPAAASELFG 257
            +    R + +    +     LL         + V  +L+G   G  +  +   ASEL  
Sbjct: 236 DRLGRRRLLLLIGLLLAALGLLLLALAPSLALLLVALLLLGFGLGFAFPALLTLASELAP 295

Query: 258 LKSFGALYNFLTLASPAGSLIFSGVIASGIYDYYAEKQAGLLWKYNGNMLPVSFRDQETP 317
            ++ G            G  +   +             AGLL    G             
Sbjct: 296 PEARGTASGLFNTFGSLGGALGPLL-------------AGLLLDTGG------------- 329

Query: 318 TCLGSICYSITCGIMAGLCIIAMVMSLIVV 347
                  Y     I+A L ++A ++ L++ 
Sbjct: 330 -------YGGVFLILAALALLAALLLLLLP 352

MFS proteins facilitate the transport across cytoplasmic or internal membranes of a variety of substrates including ions, sugar phosphates, drugs, neurotransmitters, nucleosides, amino acids, and peptides. They do so using the electrochemical potential of the transported substrates. Uniporters transport a single substrate, while symporters and antiporters transport two substrates in the same or in opposite directions, respectively, across membranes. MFS proteins are typically 400 to 600 amino acids in length, and the majority contain 12 transmembrane alpha helices (TMs) connected by hydrophilic loops. The N- and C-terminal halves of these proteins display weak similarity and may be the result of a gene duplication/fusion event. Based on kinetic studies and the structures of a few bacterial superfamily members, GlpT (glycerol-3-phosphate transporter), LacY (lactose permease), and EmrD (multidrug transporter), MFS proteins are thought to function through a single substrate binding site, alternating-access mechanism involving a rocker-switch type of movement. Bacterial members function primarily for nutrient uptake, and as drug-efflux pumps to confer antibiotic resistance. Some MFS proteins have medical significance in humans such as the glucose transporter Glut4, which is impaired in type II diabetes, and glucose-6-phosphate transporter (G6PT), which causes glycogen storage disease when mutated. Length = 352

>gnl|CDD|119392 cd06174, MFS, The Major Facilitator Superfamily (MFS) is a large and diverse group of secondary transporters that includes uniporters, symporters, and antiporters

 Score = 41.5 bits (98), Expect = 5e-04
 Identities = 32/155 (20%), Positives = 54/155 (34%), Gaps = 8/155 (5%)

Query: 138 FLLLFFSLVLASGSGLTVIDNLGQICQSLGYADTSIYVSMISIWNFLGRVGGGYFSEAIV 197
            L L F L       L+    L      L  +   + VS  S+   LG +  GY S+   
Sbjct: 3   LLFLGFFLSGLDRGLLSPALPLLAEDLGLSASQAGLIVSAFSLGYALGSLLAGYLSDR-- 60

Query: 198 RKFAYPRPVAMAVAQVVMAFALLYYAIGW-PGEIYVTTVLVGLSYGAHWAIVPAAASELF 256
               + R   + +  ++ A   L  A       + V   L+GL  GA +    A  +E F
Sbjct: 61  ----FGRRRVLLLGLLLFALGSLLLAFASSLWLLLVGRFLLGLGGGALYPAAAALIAEWF 116

Query: 257 GLKSFGALYNFLTLASPAGSLIFSGVIASGIYDYY 291
             K  G      +     G+L+   ++   + +  
Sbjct: 117 PPKERGRALGLFSAGFGLGALL-GPLLGGLLAESL 150

MFS proteins facilitate the transport across cytoplasmic or internal membranes of a variety of substrates including ions, sugar phosphates, drugs, neurotransmitters, nucleosides, amino acids, and peptides. They do so using the electrochemical potential of the transported substrates. Uniporters transport a single substrate, while symporters and antiporters transport two substrates in the same or in opposite directions, respectively, across membranes. MFS proteins are typically 400 to 600 amino acids in length, and the majority contain 12 transmembrane alpha helices (TMs) connected by hydrophilic loops. The N- and C-terminal halves of these proteins display weak similarity and may be the result of a gene duplication/fusion event. Based on kinetic studies and the structures of a few bacterial superfamily members, GlpT (glycerol-3-phosphate transporter), LacY (lactose permease), and EmrD (multidrug transporter), MFS proteins are thought to function through a single substrate binding site, alternating-access mechanism involving a rocker-switch type of movement. Bacterial members function primarily for nutrient uptake, and as drug-efflux pumps to confer antibiotic resistance. Some MFS proteins have medical significance in humans such as the glucose transporter Glut4, which is impaired in type II diabetes, and glucose-6-phosphate transporter (G6PT), which causes glycogen storage disease when mutated. Length = 352

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	366
PTZ00207	591	hypothetical protein; Provisional	100.0
PRK11273	452	glpT sn-glycerol-3-phosphate transporter; Provisio	99.65
PRK09556	467	uhpT sugar phosphate antiporter; Reviewed	99.64
PRK11663	434	regulatory protein UhpC; Provisional	99.61
PRK10504	471	putative transporter; Provisional	99.61
COG2814	394	AraJ Arabinose efflux permease [Carbohydrate trans	99.61
TIGR00890	377	2A0111 Oxalate/Formate Antiporter.	99.6
TIGR00892	455	2A0113 monocarboxylate transporter 1.	99.6
KOG2504	509	consensus Monocarboxylate transporter [Carbohydrat	99.59
PRK11663	434	regulatory protein UhpC; Provisional	99.58
TIGR00893	399	2A0114 d-galactonate transporter.	99.58
PRK03545	390	putative arabinose transporter; Provisional	99.58
TIGR02332	412	HpaX 4-hydroxyphenylacetate permease. This protein	99.58
COG2271	448	UhpC Sugar phosphate permease [Carbohydrate transp	99.57
PRK14995	495	methyl viologen resistance protein SmvA; Provision	99.57
PRK10213	394	nepI ribonucleoside transporter; Reviewed	99.56
PRK10091	382	MFS transport protein AraJ; Provisional	99.56
PRK09705	393	cynX putative cyanate transporter; Provisional	99.55
PRK15403	413	multidrug efflux system protein MdtM; Provisional	99.54
TIGR00900	365	2A0121 H+ Antiporter protein.	99.54
TIGR01299	742	synapt_SV2 synaptic vesicle protein SV2. This mode	99.54
TIGR00710	385	efflux_Bcr_CflA drug resistance transporter, Bcr/C	99.54
PRK11551	406	putative 3-hydroxyphenylpropionic transporter MhpT	99.54
TIGR00711	485	efflux_EmrB drug resistance transporter, EmrB/QacA	99.53
PF07690	352	MFS_1: Major Facilitator Superfamily; InterPro: IP	99.53
PRK10054	395	putative transporter; Provisional	99.53
TIGR00893	399	2A0114 d-galactonate transporter.	99.52
PRK11551	406	putative 3-hydroxyphenylpropionic transporter MhpT	99.52
PRK10473	392	multidrug efflux system protein MdtL; Provisional	99.5
TIGR00903	368	2A0129 major facilitator 4 family protein. This fa	99.5
TIGR00890	377	2A0111 Oxalate/Formate Antiporter.	99.5
PRK03699	394	putative transporter; Provisional	99.49
COG2223	417	NarK Nitrate/nitrite transporter [Inorganic ion tr	99.49
TIGR00924	475	yjdL_sub1_fam amino acid/peptide transporter (Pept	99.49
cd06174	352	MFS The Major Facilitator Superfamily (MFS) is a l	99.49
PRK03699	394	putative transporter; Provisional	99.48
PRK15402	406	multidrug efflux system translocase MdfA; Provisio	99.48
TIGR00895	398	2A0115 benzoate transport.	99.48
PRK11652	394	emrD multidrug resistance protein D; Provisional	99.48
PRK12307	426	putative sialic acid transporter; Provisional	99.48
TIGR00889	418	2A0110 nucleoside transporter. This family of prot	99.48
PRK05122	399	major facilitator superfamily transporter; Provisi	99.48
TIGR00891	405	2A0112 putative sialic acid transporter.	99.47
TIGR00894	465	2A0114euk Na(+)-dependent inorganic phosphate cotr	99.47
PRK11102	377	bicyclomycin/multidrug efflux system; Provisional	99.47
PRK09874	408	drug efflux system protein MdtG; Provisional	99.47
PRK09584	500	tppB putative tripeptide transporter permease; Rev	99.46
PRK12382	392	putative transporter; Provisional	99.46
TIGR00712	438	glpT glycerol-3-phosphate transporter. This model	99.46
PRK15034	462	nitrate/nitrite transport protein NarU; Provisiona	99.46
PRK15462	493	dipeptide/tripeptide permease D; Provisional	99.45
TIGR00712	438	glpT glycerol-3-phosphate transporter. This model	99.45
PLN00028	476	nitrate transmembrane transporter; Provisional	99.45
TIGR00892	455	2A0113 monocarboxylate transporter 1.	99.45
TIGR02332	412	HpaX 4-hydroxyphenylacetate permease. This protein	99.45
PRK03893	496	putative sialic acid transporter; Provisional	99.45
TIGR00886	366	2A0108 nitrite extrusion protein (nitrite facilita	99.44
TIGR00881	379	2A0104 phosphoglycerate transporter family protein	99.44
TIGR00879	481	SP MFS transporter, sugar porter (SP) family. This	99.44
PRK11646	400	multidrug resistance protein MdtH; Provisional	99.44
PRK09528	420	lacY galactoside permease; Reviewed	99.44
PRK10207	489	dipeptide/tripeptide permease B; Provisional	99.44
PLN00028	476	nitrate transmembrane transporter; Provisional	99.44
PRK03633	381	putative MFS family transporter protein; Provision	99.44
PRK09952	438	shikimate transporter; Provisional	99.44
TIGR01299	742	synapt_SV2 synaptic vesicle protein SV2. This mode	99.44
PRK11043	401	putative transporter; Provisional	99.43
TIGR00897	402	2A0118 polyol permease family. This family of prot	99.43
TIGR00902	382	2A0127 phenyl proprionate permease family protein.	99.43
PRK10642	490	proline/glycine betaine transporter; Provisional	99.43
PRK03545	390	putative arabinose transporter; Provisional	99.43
PF06609	599	TRI12: Fungal trichothecene efflux pump (TRI12); I	99.43
PRK11195	393	lysophospholipid transporter LplT; Provisional	99.42
PRK11273	452	glpT sn-glycerol-3-phosphate transporter; Provisio	99.42
PRK09705	393	cynX putative cyanate transporter; Provisional	99.42
PRK10489	417	enterobactin exporter EntS; Provisional	99.42
PRK09556	467	uhpT sugar phosphate antiporter; Reviewed	99.42
COG2271	448	UhpC Sugar phosphate permease [Carbohydrate transp	99.41
KOG2532	466	consensus Permease of the major facilitator superf	99.41
PRK12382	392	putative transporter; Provisional	99.4
TIGR00903	368	2A0129 major facilitator 4 family protein. This fa	99.39
TIGR00879	481	SP MFS transporter, sugar porter (SP) family. This	99.39
TIGR00899	375	2A0120 sugar efflux transporter. This family of pr	99.39
TIGR00883	394	2A0106 metabolite-proton symporter. This model rep	99.39
TIGR00881	379	2A0104 phosphoglycerate transporter family protein	99.38
PRK09874	408	drug efflux system protein MdtG; Provisional	99.38
PRK10406	432	alpha-ketoglutarate transporter; Provisional	99.38
PRK05122	399	major facilitator superfamily transporter; Provisi	99.37
PRK15034	462	nitrate/nitrite transport protein NarU; Provisiona	99.37
TIGR00897	402	2A0118 polyol permease family. This family of prot	99.36
cd06174	352	MFS The Major Facilitator Superfamily (MFS) is a l	99.36
PRK10489	417	enterobactin exporter EntS; Provisional	99.36
PRK10077	479	xylE D-xylose transporter XylE; Provisional	99.36
PRK10642	490	proline/glycine betaine transporter; Provisional	99.35
TIGR00898	505	2A0119 cation transport protein.	99.35
TIGR00792	437	gph sugar (Glycoside-Pentoside-Hexuronide) transpo	99.35
PRK12307	426	putative sialic acid transporter; Provisional	99.35
TIGR00887	502	2A0109 phosphate:H+ symporter. This model represen	99.35
PRK03633	381	putative MFS family transporter protein; Provision	99.34
TIGR02718	390	sider_RhtX_FptX siderophore transporter, RhtX/FptX	99.33
TIGR00896	355	CynX cyanate transporter. This family of proteins	99.33
PRK10077	479	xylE D-xylose transporter XylE; Provisional	99.32
PF11700	477	ATG22: Vacuole effluxer Atg22 like; InterPro: IPR0	99.31
TIGR00894	465	2A0114euk Na(+)-dependent inorganic phosphate cotr	99.31
TIGR00880	141	2_A_01_02 Multidrug resistance protein.	99.3
KOG1330	493	consensus Sugar transporter/spinster transmembrane	99.3
TIGR00882	396	2A0105 oligosaccharide:H+ symporter.	99.3
TIGR00899	375	2A0120 sugar efflux transporter. This family of pr	99.3
PRK11128	382	putative 3-phenylpropionic acid transporter; Provi	99.3
PRK10406	432	alpha-ketoglutarate transporter; Provisional	99.29
PRK15011	393	sugar efflux transporter B; Provisional	99.29
TIGR01272	310	gluP glucose/galactose transporter. Disruption of	99.29
PRK09952	438	shikimate transporter; Provisional	99.29
TIGR00885	410	fucP L-fucose:H+ symporter permease. This family d	99.28
TIGR00900	365	2A0121 H+ Antiporter protein.	99.27
PRK15075	434	citrate-proton symporter; Provisional	99.27
TIGR00882	396	2A0105 oligosaccharide:H+ symporter.	99.27
PRK10091	382	MFS transport protein AraJ; Provisional	99.27
PRK09528	420	lacY galactoside permease; Reviewed	99.27
KOG4686	459	consensus Predicted sugar transporter [Carbohydrat	99.26
TIGR00895	398	2A0115 benzoate transport.	99.25
PRK03893	496	putative sialic acid transporter; Provisional	99.24
PRK11010	491	ampG muropeptide transporter; Validated	99.24
TIGR00896	355	CynX cyanate transporter. This family of proteins	99.24
TIGR00891	405	2A0112 putative sialic acid transporter.	99.24
PRK10504	471	putative transporter; Provisional	99.24
PRK11010	491	ampG muropeptide transporter; Validated	99.24
PTZ00207	591	hypothetical protein; Provisional	99.22
TIGR00887	502	2A0109 phosphate:H+ symporter. This model represen	99.22
PRK15075	434	citrate-proton symporter; Provisional	99.21
COG2814	394	AraJ Arabinose efflux permease [Carbohydrate trans	99.21
TIGR00898	505	2A0119 cation transport protein.	99.21
TIGR00806	511	rfc RFC reduced folate carrier. Proteins of the RF	99.2
TIGR00805	633	oat sodium-independent organic anion transporter.	99.2
PRK10133	438	L-fucose transporter; Provisional	99.2
PRK06814	1140	acylglycerophosphoethanolamine acyltransferase; Pr	99.19
COG2807	395	CynX Cyanate permease [Inorganic ion transport and	99.19
PRK15011	393	sugar efflux transporter B; Provisional	99.18
PRK10213	394	nepI ribonucleoside transporter; Reviewed	99.17
KOG3764	464	consensus Vesicular amine transporter [Intracellul	99.17
PRK10054	395	putative transporter; Provisional	99.16
TIGR00902	382	2A0127 phenyl proprionate permease family protein.	99.16
PRK08633	1146	2-acyl-glycerophospho-ethanolamine acyltransferase	99.15
COG3104	498	PTR2 Dipeptide/tripeptide permease [Amino acid tra	99.15
PRK15402	406	multidrug efflux system translocase MdfA; Provisio	99.15
PRK11902	402	ampG muropeptide transporter; Reviewed	99.14
PRK11646	400	multidrug resistance protein MdtH; Provisional	99.13
PRK11128	382	putative 3-phenylpropionic acid transporter; Provi	99.12
PRK10429	473	melibiose:sodium symporter; Provisional	99.12
TIGR00901	356	2A0125 AmpG-related permease.	99.12
KOG2533	495	consensus Permease of the major facilitator superf	99.11
PF05977	524	MFS_3: Transmembrane secretion effector; InterPro:	99.1
PRK06814	1140	acylglycerophosphoethanolamine acyltransferase; Pr	99.09
PRK10133	438	L-fucose transporter; Provisional	99.09
COG2223	417	NarK Nitrate/nitrite transporter [Inorganic ion tr	99.08
PRK11902	402	ampG muropeptide transporter; Reviewed	99.08
KOG0255	521	consensus Synaptic vesicle transporter SVOP and re	99.08
PRK09848	448	glucuronide transporter; Provisional	99.08
TIGR00885	410	fucP L-fucose:H+ symporter permease. This family d	99.07
COG2270	438	Permeases of the major facilitator superfamily [Ge	99.07
PRK09669	444	putative symporter YagG; Provisional	99.06
PRK08633	1146	2-acyl-glycerophospho-ethanolamine acyltransferase	99.05
KOG0569	485	consensus Permease of the major facilitator superf	99.04
TIGR00710	385	efflux_Bcr_CflA drug resistance transporter, Bcr/C	99.04
TIGR00711	485	efflux_EmrB drug resistance transporter, EmrB/QacA	99.03
TIGR00883	394	2A0106 metabolite-proton symporter. This model rep	99.01
PF03825	400	Nuc_H_symport: Nucleoside H+ symporter	99.01
PRK14995	495	methyl viologen resistance protein SmvA; Provision	99.01
PF01306	412	LacY_symp: LacY proton/sugar symporter; InterPro:	98.99
PRK11043	401	putative transporter; Provisional	98.99
KOG0254	513	consensus Predicted transporter (major facilitator	98.98
PF13347	428	MFS_2: MFS/sugar transport protein	98.97
PF07690	352	MFS_1: Major Facilitator Superfamily; InterPro: IP	98.94
TIGR01301	477	GPH_sucrose GPH family sucrose/H+ symporter. This	98.93
TIGR00886	366	2A0108 nitrite extrusion protein (nitrite facilita	98.91
PRK10473	392	multidrug efflux system protein MdtL; Provisional	98.91
KOG2615	451	consensus Permease of the major facilitator superf	98.91
TIGR02718	390	sider_RhtX_FptX siderophore transporter, RhtX/FptX	98.88
KOG2532	466	consensus Permease of the major facilitator superf	98.87
PRK11102	377	bicyclomycin/multidrug efflux system; Provisional	98.85
TIGR00792	437	gph sugar (Glycoside-Pentoside-Hexuronide) transpo	98.84
TIGR00901	356	2A0125 AmpG-related permease.	98.83
PRK11462	460	putative transporter; Provisional	98.83
KOG0253	528	consensus Synaptic vesicle transporter SV2 (major	98.82
COG0738	422	FucP Fucose permease [Carbohydrate transport and m	98.8
PF05977	524	MFS_3: Transmembrane secretion effector; InterPro:	98.79
KOG2504	509	consensus Monocarboxylate transporter [Carbohydrat	98.78
PRK11652	394	emrD multidrug resistance protein D; Provisional	98.76
PRK11195	393	lysophospholipid transporter LplT; Provisional	98.75
COG2211	467	MelB Na+/melibiose symporter and related transport	98.73
COG2807	395	CynX Cyanate permease [Inorganic ion transport and	98.71
KOG2533	495	consensus Permease of the major facilitator superf	98.71
TIGR00788	468	fbt folate/biopterin transporter. The only functio	98.65
KOG0252	538	consensus Inorganic phosphate transporter [Inorgan	98.6
PRK09669	444	putative symporter YagG; Provisional	98.55
KOG3764	464	consensus Vesicular amine transporter [Intracellul	98.55
KOG0252	538	consensus Inorganic phosphate transporter [Inorgan	98.54
COG0738	422	FucP Fucose permease [Carbohydrate transport and m	98.48
TIGR00924	475	yjdL_sub1_fam amino acid/peptide transporter (Pept	98.47
KOG0569	485	consensus Permease of the major facilitator superf	98.43
TIGR00889	418	2A0110 nucleoside transporter. This family of prot	98.42
PRK15403	413	multidrug efflux system protein MdtM; Provisional	98.41
TIGR00926	654	2A1704 Peptide:H+ symporter (also transports b-lac	98.41
PF00083	451	Sugar_tr: Sugar (and other) transporter; InterPro:	98.38
PF01306	412	LacY_symp: LacY proton/sugar symporter; InterPro:	98.36
PF13347	428	MFS_2: MFS/sugar transport protein	98.34
PRK10429	473	melibiose:sodium symporter; Provisional	98.33
PF03209	403	PUCC: PUCC protein; InterPro: IPR004896 This prote	98.33
PRK11462	460	putative transporter; Provisional	98.32
PF05631	354	DUF791: Protein of unknown function (DUF791); Inte	98.31
PF00083	451	Sugar_tr: Sugar (and other) transporter; InterPro:	98.3
TIGR00788	468	fbt folate/biopterin transporter. The only functio	98.24
TIGR01301	477	GPH_sucrose GPH family sucrose/H+ symporter. This	98.23
PRK10207	489	dipeptide/tripeptide permease B; Provisional	98.21
PRK09848	448	glucuronide transporter; Provisional	98.18
PRK09584	500	tppB putative tripeptide transporter permease; Rev	98.17
KOG3762	618	consensus Predicted transporter [General function	98.14
PF06813	250	Nodulin-like: Nodulin-like; InterPro: IPR010658 Th	98.13
PF03825	400	Nuc_H_symport: Nucleoside H+ symporter	98.09
PF03209	403	PUCC: PUCC protein; InterPro: IPR004896 This prote	98.07
KOG2563	480	consensus Permease of the major facilitator superf	98.07
KOG0254	513	consensus Predicted transporter (major facilitator	98.03
KOG0255	521	consensus Synaptic vesicle transporter SVOP and re	98.0
KOG2816	463	consensus Predicted transporter ADD1 (major facili	97.91
COG0477	338	ProP Permeases of the major facilitator superfamil	97.91
PF03092	433	BT1: BT1 family; InterPro: IPR004324 Members of th	97.9
COG2211	467	MelB Na+/melibiose symporter and related transport	97.9
KOG0253	528	consensus Synaptic vesicle transporter SV2 (major	97.87
PF06609	599	TRI12: Fungal trichothecene efflux pump (TRI12); I	97.87
KOG2325	488	consensus Predicted transporter/transmembrane prot	97.85
KOG1330	493	consensus Sugar transporter/spinster transmembrane	97.62
TIGR00805	633	oat sodium-independent organic anion transporter.	97.61
PF05978	156	UNC-93: Ion channel regulatory protein UNC-93; Int	97.37
PRK03612	521	spermidine synthase; Provisional	97.3
PF11700	477	ATG22: Vacuole effluxer Atg22 like; InterPro: IPR0	97.2
PF12832	77	MFS_1_like: MFS_1 like family	97.18
PRK15462	493	dipeptide/tripeptide permease D; Provisional	97.17
PF00854	372	PTR2: POT family; InterPro: IPR000109 This entry r	97.14
KOG2615	451	consensus Permease of the major facilitator superf	97.08
KOG4686	459	consensus Predicted sugar transporter [Carbohydrat	97.0
TIGR01272	310	gluP glucose/galactose transporter. Disruption of	96.55
KOG3626	735	consensus Organic anion transporter [Secondary met	96.55
PF03137	539	OATP: Organic Anion Transporter Polypeptide (OATP)	96.41
PF03137	539	OATP: Organic Anion Transporter Polypeptide (OATP)	96.36
TIGR00769	472	AAA ADP/ATP carrier protein family. These proteins	96.35
COG2270	438	Permeases of the major facilitator superfamily [Ge	96.19
PF02487	402	CLN3: CLN3 protein; InterPro: IPR003492 Batten's d	96.06
KOG2563	480	consensus Permease of the major facilitator superf	96.0
KOG3098	461	consensus Uncharacterized conserved protein [Funct	95.99
PF01770	412	Folate_carrier: Reduced folate carrier; InterPro:	95.91
PF06963	432	FPN1: Ferroportin1 (FPN1); InterPro: IPR009716 Thi	95.83
COG3104	498	PTR2 Dipeptide/tripeptide permease [Amino acid tra	95.82
TIGR00939	437	2a57 Equilibrative Nucleoside Transporter (ENT).	95.55
KOG3626	735	consensus Organic anion transporter [Secondary met	95.53
KOG2816	463	consensus Predicted transporter ADD1 (major facili	95.26
PF07672	267	MFS_Mycoplasma: Mycoplasma MFS transporter; InterP	95.18
PF01770	412	Folate_carrier: Reduced folate carrier; InterPro:	94.86
KOG2325	488	consensus Predicted transporter/transmembrane prot	94.77
PF03092	433	BT1: BT1 family; InterPro: IPR004324 Members of th	94.71
KOG1237	571	consensus H+/oligopeptide symporter [Amino acid tr	93.98
KOG3574	510	consensus Acetyl-CoA transporter [Inorganic ion tr	93.31
KOG0637	498	consensus Sucrose transporter and related proteins	93.04
KOG3098	461	consensus Uncharacterized conserved protein [Funct	92.48
PF06963	432	FPN1: Ferroportin1 (FPN1); InterPro: IPR009716 Thi	90.7
PF06779	85	DUF1228: Protein of unknown function (DUF1228); In	90.5
PF03219	491	TLC: TLC ATP/ADP transporter; InterPro: IPR004667	90.12
KOG4332	454	consensus Predicted sugar transporter [Carbohydrat	89.74
PF01733	309	Nucleoside_tran: Nucleoside transporter; InterPro:	89.07
PF13000	544	Acatn: Acetyl-coenzyme A transporter 1; InterPro:	89.0
KOG3762	618	consensus Predicted transporter [General function	88.83
KOG1479	406	consensus Nucleoside transporter [Nucleotide trans	88.14
KOG3810	433	consensus Micronutrient transporters (folate trans	86.76
TIGR00806	511	rfc RFC reduced folate carrier. Proteins of the RF	85.27
PF05631	354	DUF791: Protein of unknown function (DUF791); Inte	82.36
COG4262	508	Predicted spermidine synthase with an N-terminal m	82.24
PF11947	153	DUF3464: Protein of unknown function (DUF3464); In	81.0

>PTZ00207 hypothetical protein; Provisional

Probab=100.00  E-value=7.8e-35  Score=296.23  Aligned_cols=292  Identities=20%  Similarity=0.299  Sum_probs=229.3

Q ss_pred             CeEEeeeccccccchHHHHHHHHHHH-HHHHhh-hhhhhhcccccCCCCCcccccccccCcCcCCCccchhhhhhhcccc
Q 017795            1 MLAVLLLEDLEVANQNVLTVLAVGLI-IIILLP-VTIPVVLVFFTEPPPPVEETLLAETNKGEASKSEDYQEEVILSEVE   78 (366)
Q Consensus         1 ~~~~~~~~~~~~~~~~~~~~~~~~~~-~ll~~p-i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   78 (366)
                      |++.+++++.+.+++..+...+++++ +++++| ++++++. +.+.++++  +     ++.   +    . .+      +
T Consensus       259 l~~~~~~~~~~~~~~~~~~~~~~v~~~lll~~p~l~ip~~~-~~~~~~~~--~-----~~~---~----~-~~------~  316 (591)
T PTZ00207        259 LPLQGALVAYLKLGSNFKVGFAVTVIVLTVIFPFMAFPLTT-FDGKRPHD--D-----SDG---K----A-KE------H  316 (591)
T ss_pred             HHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHhhhHHH-hccCCcCC--C-----ccc---c----c-cc------c
Confidence            34567888999999999999999888 888889 8877765 22211100  0     000   0    0 00      0


Q ss_pred             CCCCCCCCCCCchhHHHHHHHHHHHHHHHhhhhhhhhhhc-CCCCCCCCCCHHHHhhhhHHHHHHHHHHHhhhhHHHHHh
Q 017795           79 DEKPPEVDSLPASERQKRIAHLQAKLFQAAAEGAVRVKRR-KGPRRGEDFTLPQALMKADFLLLFFSLVLASGSGLTVID  157 (366)
Q Consensus        79 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~l~~~~~~ll~~~~~~~~~~~~~~~~  157 (366)
                      .+...+. ..++.+                   ....+.+ ..|+.++  +++|++++.|||++++.++|+.++++++++
T Consensus       317 ~~~~~~~-~~~~~~-------------------~~~~~~~~~~P~~~~--t~~q~l~~~d~Wll~~~~~cg~g~gl~~~~  374 (591)
T PTZ00207        317 VEAGEEV-SAAEDK-------------------VVETDVDYIAPQFQE--TFIEGLKTARLWCLLWSIFCCVGAHFVIIF  374 (591)
T ss_pred             ccccccc-cccccc-------------------cccccccCCCCCCcc--hHHHHHhchhHHHHHHHHHHhhCchheeee
Confidence            0000000 000000                   0000111 2244444  999999999999999999999999999999


Q ss_pred             cHHHHHHHh-CC-Chh--HH-HHHHHHHHHhhhhhhhhhhhhhhhhhcc----CchhHHHHHHHHHHHHHHHHHHhcch-
Q 017795          158 NLGQICQSL-GY-ADT--SI-YVSMISIWNFLGRVGGGYFSEAIVRKFA----YPRPVAMAVAQVVMAFALLYYAIGWP-  227 (366)
Q Consensus       158 ~l~~i~~~~-g~-~~~--~~-~~sl~~i~~~~g~~~~G~lsD~~grr~~----~~R~~~~~~~~~~~~~~~~l~~~~~~-  227 (366)
                      |+.||.+++ |+ .+.  .+ ++++.++|+++||++.|+++ .+.+|+.    +||+.++++.++ +++++++++...+ 
T Consensus       375 N~~qI~~sl~g~~~~~~~~~~~vsL~si~~~~GRl~~g~~~-~~~~~~~~~~r~prt~~l~~~~~-~~~~~lll~~~~p~  452 (591)
T PTZ00207        375 NARFIYTALAGEAPDDALNTLLTVLNGVGSAVGRLCMSYFE-IWSQKRRAEDRVPITIALFIPSV-CIITMLTLFLTLPK  452 (591)
T ss_pred             cHHHHHHHhcCCCCCccceeeehhhhhHHHHhhHHHHHHHH-HHHHhhccccccchhHHHHHHHH-HHHHHHHHHHHCCc
Confidence            999999999 88 333  34 89999999999999999998 5544444    899999999999 8888888886666 


Q ss_pred             hHHHHHHHHHHHHhhhhhhhHHHHHHHhhCCCchhhHHHHHHhHhhhhHHHhhhhHHHHHhhhhhhhhhhhhhhccCCCC
Q 017795          228 GEIYVTTVLVGLSYGAHWAIVPAAASELFGLKSFGALYNFLTLASPAGSLIFSGVIASGIYDYYAEKQAGLLWKYNGNML  307 (366)
Q Consensus       228 ~~l~~~~~l~G~~~g~~~~~~~~~~se~f~~~~~g~~~g~~~~~~~~G~~i~gp~i~G~l~d~~~~~~~~~~~~~~~~~~  307 (366)
                      ..+++..+++|+|+|++|++.+++++|+|+ |++|+.||+..++.++|+++++..++|.+||+++.+             
T Consensus       453 ~~L~~~~~lvg~~~G~~~~~~~~i~selFg-k~~g~~yN~~~~a~pigs~~~n~~l~G~~Yd~ea~k-------------  518 (591)
T PTZ00207        453 AALPLPYFIAAFANGFMAATIALVTRTIFA-KDPAKHYNFCFLGSVLSAIFLNRLLYGEWYTQQADK-------------  518 (591)
T ss_pred             cHhHHHHHHHHHHhhHhHHHHHHHHHHHhc-cchHHHhhHHhHHHHHHHHHHHHHHHHHHHHHHHhh-------------
Confidence            789999999999999999999999999999 999999999999999999999999999999999843             


Q ss_pred             CcccCCCCCCcccCCcchHHHHHHHHHHHHHHHHHHHHHHhhcHHHHHHHh
Q 017795          308 PVSFRDQETPTCLGSICYSITCGIMAGLCIIAMVMSLIVVHRTKSVYAQLY  358 (366)
Q Consensus       308 ~~~~~~~~~~~c~g~~~~~~~f~i~~~~~~~~~~~~~~~~~~~r~~~~~~~  358 (366)
                            +++.+|+|++||+.+|.+++++|+++++++.++..|+|++|++..
T Consensus       519 ------~~~~~C~G~~C~~~~~~v~~~~~~~g~~~s~~l~~R~r~~y~~~~  563 (591)
T PTZ00207        519 ------LGQDVCTERVCVVMPLAFLLGLSFLAFITSTYVHLQYRRLCLKAL  563 (591)
T ss_pred             ------CCCCeeCCceeeHhHHHHHHHHHHHHHHHHhheeeehHHHHHHHH
Confidence                  345699999999999999999999999999999999999998653

>PRK11273 glpT sn-glycerol-3-phosphate transporter; Provisional

Probab=99.65  E-value=3.3e-14  Score=142.27  Aligned_cols=194  Identities=15%  Similarity=0.143  Sum_probs=135.7

Q ss_pred             HhhhhHHHHHHHHHHHhhhhHHHHHhcHHHHHHH-hCCChhHH--HHHHHHHHHhhhhhhhhhhhhhhhhhccCchhHHH
Q 017795          132 ALMKADFLLLFFSLVLASGSGLTVIDNLGQICQS-LGYADTSI--YVSMISIWNFLGRVGGGYFSEAIVRKFAYPRPVAM  208 (366)
Q Consensus       132 ~l~~~~~~ll~~~~~~~~~~~~~~~~~l~~i~~~-~g~~~~~~--~~sl~~i~~~~g~~~~G~lsD~~grr~~~~R~~~~  208 (366)
                      .++++.+|.+++..++.....+....++|.+.++ .|++..++  ..+++.++..+++++.|+++||+++++..   ...
T Consensus       249 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~P~~l~~~~g~s~~~~~~~~~~~~~~~~~g~~~~G~l~dr~~~~r~~---~~~  325 (452)
T PRK11273        249 VLPNKLLWYIAIANVFVYLLRYGILDWSPTYLKEVKHFALDKSSWAYFLYEYAGIPGTLLCGWMSDKVFRGNRG---ATG  325 (452)
T ss_pred             HHcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCcc---hHH
Confidence            5678889988888777776667778899999876 68886655  56677788889999999999999543221   111


Q ss_pred             HHHHHHHHHHHHHHH---hcchhHHHHHHHHHHHHhhhhhhhHHHHHHHhhCCCchhhHHHHHHhHhhhhHHHhhhhHHH
Q 017795          209 AVAQVVMAFALLYYA---IGWPGEIYVTTVLVGLSYGAHWAIVPAAASELFGLKSFGALYNFLTLASPAGSLIFSGVIAS  285 (366)
Q Consensus       209 ~~~~~~~~~~~~l~~---~~~~~~l~~~~~l~G~~~g~~~~~~~~~~se~f~~~~~g~~~g~~~~~~~~G~~i~gp~i~G  285 (366)
                      .....+..++.+++.   ..+....+++.+++|.+..+........+.|.+|++.+|++.|+.+....+|+.+.+|.++|
T Consensus       326 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~~~g~~v~g  405 (452)
T PRK11273        326 VFFMTLVTIATIVYWLNPAGNPTVDMACMIVIGFLIYGPVMLIGLHALELAPKKAAGTAAGFTGLFGYLGGSVAASAIVG  405 (452)
T ss_pred             HHHHHHHHHHHHHHHHhcccChHHHHHHHHHHHHHHHhHHHHHHHHHHHHcChhhhhhHHHHHHHHHHHHHHHhhhhhHH
Confidence            111222222222221   12223333444455554433333444567899999999999999999888887644799999


Q ss_pred             HHhhhhhhhhhhhhhhccCCCCCcccCCCCCCcccCCcchHHHHHHHHHHHHHHHHHHHHHHhhcHHHHHHHhhc
Q 017795          286 GIYDYYAEKQAGLLWKYNGNMLPVSFRDQETPTCLGSICYSITCGIMAGLCIIAMVMSLIVVHRTKSVYAQLYGN  360 (366)
Q Consensus       286 ~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~g~~~~~~~f~i~~~~~~~~~~~~~~~~~~~r~~~~~~~~~  360 (366)
                      ++.|..+                                |+.+|++++++++++++....+.+.+||.++++..|
T Consensus       406 ~l~~~~g--------------------------------~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  448 (452)
T PRK11273        406 YTVDFFG--------------------------------WDGGFMVMIGGSILAVILLIVVMIGEKRHHEELLQK  448 (452)
T ss_pred             HHHHHhc--------------------------------chHHHHHHHHHHHHHHHHHHHHhccccchHHHHHhh
Confidence            9999987                                999999999999998888887776666666665444

>PRK09556 uhpT sugar phosphate antiporter; Reviewed

Probab=99.64  E-value=2.8e-14  Score=143.41  Aligned_cols=188  Identities=14%  Similarity=0.058  Sum_probs=130.5

Q ss_pred             HhhhhHHHHHHHHHHHhhhhHHHHHhcHHHHHH-HhCCChhHH--HHHHHHHHHhhhhhhhhhhhhhhhhhccCchhHHH
Q 017795          132 ALMKADFLLLFFSLVLASGSGLTVIDNLGQICQ-SLGYADTSI--YVSMISIWNFLGRVGGGYFSEAIVRKFAYPRPVAM  208 (366)
Q Consensus       132 ~l~~~~~~ll~~~~~~~~~~~~~~~~~l~~i~~-~~g~~~~~~--~~sl~~i~~~~g~~~~G~lsD~~grr~~~~R~~~~  208 (366)
                      .++++.+|.+.+..++.......+..|+|.+.+ ++|++..++  ..+.+.++..+|++++|+++||++||+..      
T Consensus       254 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~p~yl~~~~g~s~~~a~~~~~~~~~~~~ig~~~~G~lsDr~g~r~~~------  327 (467)
T PRK09556        254 VLKNPVIWLLCFANIFLYIVRIGIDNWSPVYAFQELGFSKEDAINTFTLFEIGALVGSLLWGWLSDLANGRRAL------  327 (467)
T ss_pred             HHcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCchH------
Confidence            678999999998888887777778889998875 589987665  67778889999999999999999987543      


Q ss_pred             HHHHHHHHHH--HHHHHh-cchhHHHHHHHHHHHHhhhhhhhHHHHHHHhhCCCchhhHHHHHHhHhhh-hHHHhhhhHH
Q 017795          209 AVAQVVMAFA--LLYYAI-GWPGEIYVTTVLVGLSYGAHWAIVPAAASELFGLKSFGALYNFLTLASPA-GSLIFSGVIA  284 (366)
Q Consensus       209 ~~~~~~~~~~--~~l~~~-~~~~~l~~~~~l~G~~~g~~~~~~~~~~se~f~~~~~g~~~g~~~~~~~~-G~~i~gp~i~  284 (366)
                      .....+..++  .+.+.. .+...+++..++.|++..+........+.|.+|.+.+|++.|+.+..+.+ |+.+ +|.+.
T Consensus       328 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~p~~~~g~a~gi~~~~g~l~g~~~-~~~~~  406 (467)
T PRK09556        328 VACIALALIIFTLGVYQHATSEYMYLASLFALGFLVFGPQLLIGVAAVGFVPKKAIGVANGIKGTFAYLFGDSF-AKVGL  406 (467)
T ss_pred             HHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHhhHHHHHHHHHHhhcchhhHHHHHHHHHHHHHHHhHHH-HhhhH
Confidence            1111111112  122222 23334456666677554444444456777999999999999999999887 6575 99999


Q ss_pred             HHHhhhhh-hhhhhhhhhccCCCCCcccCCCCCCcccCCcchHHHHHHHHHHHHHHHHHHHHHH
Q 017795          285 SGIYDYYA-EKQAGLLWKYNGNMLPVSFRDQETPTCLGSICYSITCGIMAGLCIIAMVMSLIVV  347 (366)
Q Consensus       285 G~l~d~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~c~g~~~~~~~f~i~~~~~~~~~~~~~~~~  347 (366)
                      |++.|.+. .+.                     ..-+...+|+..|++++++++++++..+.+.
T Consensus       407 G~i~~~~~~g~~---------------------~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~  449 (467)
T PRK09556        407 GMIADPTKNGTP---------------------IFGYTLTGWAGTFAALDIAAIGCICLMAIVA  449 (467)
T ss_pred             HHHhcccccccc---------------------cccccccChHHHHHHHHHHHHHHHHHHHHHH
Confidence            99999211 000                     0000011399999999888888877776654

>PRK11663 regulatory protein UhpC; Provisional

Probab=99.61  E-value=1.3e-13  Score=137.39  Aligned_cols=185  Identities=18%  Similarity=0.152  Sum_probs=125.8

Q ss_pred             HhhhhHHHHHHHHHHHhhhhHHHHHhcHHHHH-HHhCCChhHH--HHHHHHHHHhhhhhhhhhhhhhhhhhccCchhHHH
Q 017795          132 ALMKADFLLLFFSLVLASGSGLTVIDNLGQIC-QSLGYADTSI--YVSMISIWNFLGRVGGGYFSEAIVRKFAYPRPVAM  208 (366)
Q Consensus       132 ~l~~~~~~ll~~~~~~~~~~~~~~~~~l~~i~-~~~g~~~~~~--~~sl~~i~~~~g~~~~G~lsD~~grr~~~~R~~~~  208 (366)
                      .++++.+|.+.+.+++.......+..++|.+. +++|++....  ..+++.++..+|++++|+++||+.++.........
T Consensus       239 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~l~~~~g~s~~~a~~~~~~~~~~~~~g~~~~g~l~dr~~~~~r~~~~~~~  318 (434)
T PRK11663        239 VLLNPYIWLLSFSYVLVYVVRAAINDWGNLYMSETLGVDLVTANSAVSMFELGGFIGALVAGWGSDKLFNGNRGPMNLIF  318 (434)
T ss_pred             HhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHHHHHHhhhHHHhccCCccHHHHHH
Confidence            56778899888777766666666778899988 4579887665  77888899999999999999999543211111111


Q ss_pred             HHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHhhhhhhhHHHHHHHhhCCCchhhHHHHHHhHhhhhHHHhhhhHHHHHh
Q 017795          209 AVAQVVMAFALLYYAIGWPGEIYVTTVLVGLSYGAHWAIVPAAASELFGLKSFGALYNFLTLASPAGSLIFSGVIASGIY  288 (366)
Q Consensus       209 ~~~~~~~~~~~~l~~~~~~~~l~~~~~l~G~~~g~~~~~~~~~~se~f~~~~~g~~~g~~~~~~~~G~~i~gp~i~G~l~  288 (366)
                      .++.++..++.+++...+.....+..+..|++..+........++|.++++++|++.|+.+....+|+.+ +|.+.|++.
T Consensus       319 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~-~p~~~g~l~  397 (434)
T PRK11663        319 AAGILLSVGSLWLMPFASYVMQAACFFTIGFFVFGPQMLIGMAAAECSHKEAAGAATGFVGLFAYLGAAL-SGYPLAKVL  397 (434)
T ss_pred             HHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHhhHHHHHHHHHHhcccHhhHHhHHHHHHHHHHHHHHH-hcccHHHHH
Confidence            2222222222222222222222233333444333333444567789999999999999999999999996 999999999


Q ss_pred             hhhhhhhhhhhhhccCCCCCcccCCCCCCcccCCcchHHHHHHHHHHHHHHHHHHHHHHhh
Q 017795          289 DYYAEKQAGLLWKYNGNMLPVSFRDQETPTCLGSICYSITCGIMAGLCIIAMVMSLIVVHR  349 (366)
Q Consensus       289 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~g~~~~~~~f~i~~~~~~~~~~~~~~~~~~  349 (366)
                      |..+                                |+.+|++.+++++++++..+...++
T Consensus       398 ~~~g--------------------------------~~~~f~~~~~~~~~~~~~~~~~~~~  426 (434)
T PRK11663        398 EIWH--------------------------------WTGFFVVISIAAGISALLLLPFLNA  426 (434)
T ss_pred             Hhcc--------------------------------cHHHHHHHHHHHHHHHHHHHHHHhh
Confidence            9877                                9999999998887776655544433

>PRK10504 putative transporter; Provisional

Probab=99.61  E-value=3.5e-14  Score=142.46  Aligned_cols=175  Identities=17%  Similarity=0.236  Sum_probs=143.7

Q ss_pred             hHHHHHHHHHHHhhhhHHHHHhcHHHHHHHhCCChhHH--HHHHHHHHHhhhhhhhhhhhhhhhhhccCchhHHHHHHHH
Q 017795          136 ADFLLLFFSLVLASGSGLTVIDNLGQICQSLGYADTSI--YVSMISIWNFLGRVGGGYFSEAIVRKFAYPRPVAMAVAQV  213 (366)
Q Consensus       136 ~~~~ll~~~~~~~~~~~~~~~~~l~~i~~~~g~~~~~~--~~sl~~i~~~~g~~~~G~lsD~~grr~~~~R~~~~~~~~~  213 (366)
                      +.+|++++++++.......+..++|.+.+++|.+....  ..+.+.++..++.+++|+++||+|||+..      ..+.+
T Consensus        10 ~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~r~~~------~~~~~   83 (471)
T PRK10504         10 WQLWIVAFGFFMQSLDTTIVNTALPSMAQSLGESPLHMHMVIVSYVLTVAVMLPASGWLADRVGVRNIF------FTAIV   83 (471)
T ss_pred             HHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHH------HHHHH
Confidence            35788888888887777778889999999999988765  66777888889999999999999998654      44555


Q ss_pred             HHHHHHHHHH-hcchhHHHHHHHHHHHHhhhhhhhHHHHHHHhhCCCchhhHHHHHHhHhhhhHHHhhhhHHHHHhhhhh
Q 017795          214 VMAFALLYYA-IGWPGEIYVTTVLVGLSYGAHWAIVPAAASELFGLKSFGALYNFLTLASPAGSLIFSGVIASGIYDYYA  292 (366)
Q Consensus       214 ~~~~~~~l~~-~~~~~~l~~~~~l~G~~~g~~~~~~~~~~se~f~~~~~g~~~g~~~~~~~~G~~i~gp~i~G~l~d~~~  292 (366)
                      +.+++.+++. ..+...+++..++.|++.+...+...+++.|.++.++++.++++......+|..+ ||.++|.+.+..+
T Consensus        84 ~~~~~~~~~~~~~~~~~l~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~-g~~~~g~l~~~~g  162 (471)
T PRK10504         84 LFTLGSLFCALSGTLNELLLARVLQGVGGAMMVPVGRLTVMKIVPREQYMAAMTFVTLPGQVGPLL-GPALGGLLVEYAS  162 (471)
T ss_pred             HHHHHHHHHHHhCCHHHHHHHHHHHHhhhHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHh-hhHHHHHHHhhcc
Confidence            5555555444 3455677888999999999988899999999999999999999999999999996 9999999998776


Q ss_pred             hhhhhhhhhccCCCCCcccCCCCCCcccCCcchHHHHHHHHHHHHHHHHHHHHHHhh
Q 017795          293 EKQAGLLWKYNGNMLPVSFRDQETPTCLGSICYSITCGIMAGLCIIAMVMSLIVVHR  349 (366)
Q Consensus       293 ~~~~~~~~~~~~~~~~~~~~~~~~~~c~g~~~~~~~f~i~~~~~~~~~~~~~~~~~~  349 (366)
                                                      |++.|++...++.++.++.....++
T Consensus       163 --------------------------------w~~~f~~~~~~~~l~~~~~~~~~~~  187 (471)
T PRK10504        163 --------------------------------WHWIFLINIPVGIIGAIATLMLMPN  187 (471)
T ss_pred             --------------------------------HHHHHHHHHHHHHHHHHHHHHhCCC
Confidence                                            9999999888887777666555443

>COG2814 AraJ Arabinose efflux permease [Carbohydrate transport and metabolism]

Probab=99.61  E-value=3.1e-14  Score=138.08  Aligned_cols=173  Identities=14%  Similarity=0.178  Sum_probs=155.8

Q ss_pred             HHHHHHHHHHHhhhhHHHHHhcHHHHHHHhCCChhHH--HHHHHHHHHhhhhhhhhhhhhhhhhhccCchhHHHHHHHHH
Q 017795          137 DFLLLFFSLVLASGSGLTVIDNLGQICQSLGYADTSI--YVSMISIWNFLGRVGGGYFSEAIVRKFAYPRPVAMAVAQVV  214 (366)
Q Consensus       137 ~~~ll~~~~~~~~~~~~~~~~~l~~i~~~~g~~~~~~--~~sl~~i~~~~g~~~~G~lsD~~grr~~~~R~~~~~~~~~~  214 (366)
                      ..+.+.++.|+.....+.....+|++.+++|.+...+  .++.+.++..++.++...++||+.||+.+      ...+.+
T Consensus        14 ~l~aLa~~~F~igttEfv~~gLLp~iA~dl~vs~~~aG~lis~yAl~~ai~ap~l~~lt~r~~Rr~lL------l~~l~l   87 (394)
T COG2814          14 ALLALALAAFAIGTTEFVPVGLLPPIAADLGVSEGAAGQLITAYALGVALGAPLLALLTGRLERRRLL------LGLLAL   87 (394)
T ss_pred             HHHHHHHHHHHHHhHHHHHHhchHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHcccchHHHH------HHHHHH
Confidence            4566777777877888888999999999999998777  99999999999999999999999887765      777788


Q ss_pred             HHHHHHHHH-hcchhHHHHHHHHHHHHhhhhhhhHHHHHHHhhCCCchhhHHHHHHhHhhhhHHHhhhhHHHHHhhhhhh
Q 017795          215 MAFALLYYA-IGWPGEIYVTTVLVGLSYGAHWAIVPAAASELFGLKSFGALYNFLTLASPAGSLIFSGVIASGIYDYYAE  293 (366)
Q Consensus       215 ~~~~~~l~~-~~~~~~l~~~~~l~G~~~g~~~~~~~~~~se~f~~~~~g~~~g~~~~~~~~G~~i~gp~i~G~l~d~~~~  293 (366)
                      +.++.++.+ ..+...+.+++++.|++.|..|++..++++++.|+++++.+.++++++..++..+ |.+++.++-|..| 
T Consensus        88 Fi~~n~l~alAp~f~~Ll~aR~~~g~a~G~f~~i~~~~a~~lvpp~~~~~Aiaiv~~G~tlA~v~-GvPLGt~ig~~~G-  165 (394)
T COG2814          88 FIVSNLLSALAPSFAVLLLARALAGLAHGVFWSIAAALAARLVPPGKRGRALALVFTGLTLATVL-GVPLGTFLGQLFG-  165 (394)
T ss_pred             HHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCccchhhHHHHHHHHHHHHHHH-hccHHHHHHHHhh-
Confidence            888888877 5677889999999999999999999999999999999999999999999999996 9999999999998 


Q ss_pred             hhhhhhhhccCCCCCcccCCCCCCcccCCcchHHHHHHHHHHHHHHHHHHHHHHh
Q 017795          294 KQAGLLWKYNGNMLPVSFRDQETPTCLGSICYSITCGIMAGLCIIAMVMSLIVVH  348 (366)
Q Consensus       294 ~~~~~~~~~~~~~~~~~~~~~~~~~c~g~~~~~~~f~i~~~~~~~~~~~~~~~~~  348 (366)
                                                     ||.+|++.+++++++.+..+...+
T Consensus       166 -------------------------------WR~~F~~ia~l~ll~~~~~~~~lP  189 (394)
T COG2814         166 -------------------------------WRATFLAIAVLALLALLLLWKLLP  189 (394)
T ss_pred             -------------------------------HHHHHHHHHHHHHHHHHHHHHhCC
Confidence                                           999999999999988877777666

>TIGR00890 2A0111 Oxalate/Formate Antiporter

Probab=99.60  E-value=3.6e-14  Score=136.41  Aligned_cols=174  Identities=26%  Similarity=0.314  Sum_probs=135.6

Q ss_pred             CHHHHhhhhHHHHHHHHHHHhhhhHHHHHhcHHHHHHHhCCChhHH--HHHHHHHHHhhhhhhhhhhhhhhhhhccCchh
Q 017795          128 TLPQALMKADFLLLFFSLVLASGSGLTVIDNLGQICQSLGYADTSI--YVSMISIWNFLGRVGGGYFSEAIVRKFAYPRP  205 (366)
Q Consensus       128 ~~~~~l~~~~~~ll~~~~~~~~~~~~~~~~~l~~i~~~~g~~~~~~--~~sl~~i~~~~g~~~~G~lsD~~grr~~~~R~  205 (366)
                      +.++.++++.+|.+.+.+++..........+.+++.+++|++....  ..++..+...++++..|+++||++||+..   
T Consensus       197 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~~~~~---  273 (377)
T TIGR00890       197 TVWEMLRTPQFWVLYLSFFLNAVSGLLLIGLYKPYGQSLGLSDGFLVLAVSISSIFNGGGRPFLGALSDKIGRQKTM---  273 (377)
T ss_pred             hHHHHHcCccHHHHHHHHHHHhHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhh---
Confidence            4567888889998877777666555555666777888888877554  77888899999999999999999987655   


Q ss_pred             HHHHHHHHHHHHHHHHHHhcc-h--hHHHHHHHHHHHHhhhhhhhHHHHHHHhhCCCchhhHHHHHHhHhhhhHHHhhhh
Q 017795          206 VAMAVAQVVMAFALLYYAIGW-P--GEIYVTTVLVGLSYGAHWAIVPAAASELFGLKSFGALYNFLTLASPAGSLIFSGV  282 (366)
Q Consensus       206 ~~~~~~~~~~~~~~~l~~~~~-~--~~l~~~~~l~G~~~g~~~~~~~~~~se~f~~~~~g~~~g~~~~~~~~G~~i~gp~  282 (366)
                         ..+.++++++.+++...+ .  ..++...++.|++.|..++..+.+++|.+|.+++++.+|+.+....+|..+ +|.
T Consensus       274 ---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~~~-~~~  349 (377)
T TIGR00890       274 ---SIVFGISAVGMAAMLFIPMLNDVLFLATVALVFFTWGGTISLFPSLVSDIFGPANSAANYGFLYTAKAVAGIF-GGL  349 (377)
T ss_pred             ---hHHHHHHHHHHHHHHHcccchhHHHHHHHHHHHHHhccchhccHHHHHHHhhhhhhhhHhHHHHHHHHHHHHH-HHH
Confidence               455555555555444222 1  223345567788888888888889999999999999999999999999996 999


Q ss_pred             HHHHHhhhhhhhhhhhhhhccCCCCCcccCCCCCCcccCCcchHHHHHHHHHHHHHHH
Q 017795          283 IASGIYDYYAEKQAGLLWKYNGNMLPVSFRDQETPTCLGSICYSITCGIMAGLCIIAM  340 (366)
Q Consensus       283 i~G~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~g~~~~~~~f~i~~~~~~~~~  340 (366)
                      ++|.+.|..+                                |++.|++.+++++++.
T Consensus       350 ~~g~l~~~~g--------------------------------~~~~f~~~~~~~~~~~  375 (377)
T TIGR00890       350 IASHALTEIG--------------------------------FEYTFIVTGAFALTSL  375 (377)
T ss_pred             HHHHHHhhhc--------------------------------hhhHHHHHHHHHHHhc
Confidence            9999999877                                9999988887766654

>TIGR00892 2A0113 monocarboxylate transporter 1

Probab=99.60  E-value=1.5e-13  Score=137.90  Aligned_cols=191  Identities=16%  Similarity=0.147  Sum_probs=139.6

Q ss_pred             HHhhhhHHHHHHHHHHHhhhhHHHHHhcHHHHHHHhCCChhHH--HHHHHHHHHhhhhhhhhhhhhhhhhhccCchhHHH
Q 017795          131 QALMKADFLLLFFSLVLASGSGLTVIDNLGQICQSLGYADTSI--YVSMISIWNFLGRVGGGYFSEAIVRKFAYPRPVAM  208 (366)
Q Consensus       131 ~~l~~~~~~ll~~~~~~~~~~~~~~~~~l~~i~~~~g~~~~~~--~~sl~~i~~~~g~~~~G~lsD~~grr~~~~R~~~~  208 (366)
                      +.++++.+|...+..++..........++|.+.+++|++...+  ..++..++..++++++|+++||...+.  .|...+
T Consensus       236 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~d~~~~~~--~~~~~~  313 (455)
T TIGR00892       236 SLFTHRGFLVYLSGNVIMFLGFFAPIIFLVPYAKDKGVDEYEAAFLLSIIGFVDIFARPSCGLIAGLKWIRP--HVQYLF  313 (455)
T ss_pred             HHhcCchHHHHHHHHHHHHHHccchHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcccccCH--HHHHHH
Confidence            5678888888777766666665666678888888999987665  778888999999999999999742211  111222


Q ss_pred             HHHHHHHHHHHHHHH-hcchhHHHHHHHHHHHHhhhhhhhHHHHHHHhhCCCchhhHHHHHHhHhhhhHHHhhhhHHHHH
Q 017795          209 AVAQVVMAFALLYYA-IGWPGEIYVTTVLVGLSYGAHWAIVPAAASELFGLKSFGALYNFLTLASPAGSLIFSGVIASGI  287 (366)
Q Consensus       209 ~~~~~~~~~~~~l~~-~~~~~~l~~~~~l~G~~~g~~~~~~~~~~se~f~~~~~g~~~g~~~~~~~~G~~i~gp~i~G~l  287 (366)
                      ..+.++.+++.++.. ..+...+++..++.|++.+...+...+++.|.++++++++.+|+.+....+|..+ ||.++|++
T Consensus       314 ~~~~~~~~l~~ll~~~~~~~~~~~i~~~~~G~~~g~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~lg~~i-gp~i~G~l  392 (455)
T TIGR00892       314 SFALLFNGLTHLLCALAGDYTGLVIYCIFFGLSFGSVGALLFEVLMDLVGAQRFSSAVGLVTIVECCAVLI-GPPLAGRL  392 (455)
T ss_pred             HHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHhchHHHHHHHHHHHHhhHHHHhhHHhHHHHHHHHHHHc-cccceeee
Confidence            333333333333333 3445566777888999999888889999999999999999999999999999996 99999999


Q ss_pred             hhhhhhhhhhhhhhccCCCCCcccCCCCCCcccCCcchHHHHHHHHHHHHHHHHHHH----HHHhhcHHHHH
Q 017795          288 YDYYAEKQAGLLWKYNGNMLPVSFRDQETPTCLGSICYSITCGIMAGLCIIAMVMSL----IVVHRTKSVYA  355 (366)
Q Consensus       288 ~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~g~~~~~~~f~i~~~~~~~~~~~~~----~~~~~~r~~~~  355 (366)
                      .|..+                               +|++.|++.+++.+++++...    +.++++||..|
T Consensus       393 ~~~~g-------------------------------~~~~~f~~~~~~~li~~~~~~~~~~~~~~~~~~~~~  433 (455)
T TIGR00892       393 VDATK-------------------------------NYKYIFYASGSIVVSAGLFLAIGNYINYRLLAKEQK  433 (455)
T ss_pred             ehhcC-------------------------------CcchHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            99875                               388999888877766655332    23344555444

>KOG2504 consensus Monocarboxylate transporter [Carbohydrate transport and metabolism]

Probab=99.59  E-value=3.9e-14  Score=143.39  Aligned_cols=182  Identities=22%  Similarity=0.289  Sum_probs=156.9

Q ss_pred             HHHhhhhHHHHHHHHHHHhhhhHHHHHhcHHHHHHHhCCChhHH--HHHHHHHHHhhhhhhhhhhhhhhhhhccCchhHH
Q 017795          130 PQALMKADFLLLFFSLVLASGSGLTVIDNLGQICQSLGYADTSI--YVSMISIWNFLGRVGGGYFSEAIVRKFAYPRPVA  207 (366)
Q Consensus       130 ~~~l~~~~~~ll~~~~~~~~~~~~~~~~~l~~i~~~~g~~~~~~--~~sl~~i~~~~g~~~~G~lsD~~grr~~~~R~~~  207 (366)
                      .+.++++.|+++.+...+...........+|.+.++.|++...+  .+++.++.+.+||++.|+++|+...    ++.+.
T Consensus       292 ~~ll~~~~fl~~~~~~~~~~~g~~~p~~~l~~~~~~~g~~~~~aa~l~Siigi~~i~gRi~~G~laD~~~~----~~~~~  367 (509)
T KOG2504|consen  292 LSLLKDPKFLLLALSNLFAYLGFNVPFVYLPSYAKSLGLSSNDAAFLLSIIGVSDIIGRIILGLLADKPGI----RALVL  367 (509)
T ss_pred             HHHHcCchHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCChhhhHHHHHHHHHhhhhhhhhhhhhcCcccc----chHHH
Confidence            47889999999999988888888888889999999999988776  8999999999999999999999863    23345


Q ss_pred             HHHHHHHHHHHHHHHH-hcchhHHHHHHHHHHHHhhhhhhhHHHHHHHhhCCCchhhHHHHHHhHhhhhHHHhhhhHHHH
Q 017795          208 MAVAQVVMAFALLYYA-IGWPGEIYVTTVLVGLSYGAHWAIVPAAASELFGLKSFGALYNFLTLASPAGSLIFSGVIASG  286 (366)
Q Consensus       208 ~~~~~~~~~~~~~l~~-~~~~~~l~~~~~l~G~~~g~~~~~~~~~~se~f~~~~~g~~~g~~~~~~~~G~~i~gp~i~G~  286 (366)
                      ..++.++.+++.+.+. ..+...+....+++|++.|...++.+.++.|+.+.+++..++|+..+...++.++ ||+++|+
T Consensus       368 ~~~~ll~~gl~~~~~p~~~~~~~l~~~~~~fG~~~g~~~~l~~~i~~~~~g~~~l~~a~Gl~l~~~gi~~l~-gpPiag~  446 (509)
T KOG2504|consen  368 FLLTLLIAGLARLFLPFATTYVGLIVFSILFGFCVGSFSSLTPVILVDLVGLEKLSNAYGLLLLFQGIGALV-GPPIAGL  446 (509)
T ss_pred             HHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcChhhcchHHHHHHHHhHHHHHc-Cccccee
Confidence            5667777777765655 3445678889999999999999998899999999999999999999999999997 9999999


Q ss_pred             HhhhhhhhhhhhhhhccCCCCCcccCCCCCCcccCCcchHHHHHHHHHHHHHHHHHHHHHH
Q 017795          287 IYDYYAEKQAGLLWKYNGNMLPVSFRDQETPTCLGSICYSITCGIMAGLCIIAMVMSLIVV  347 (366)
Q Consensus       287 l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~g~~~~~~~f~i~~~~~~~~~~~~~~~~  347 (366)
                      ++|.++                               +|...|+..+++.+++.++.++..
T Consensus       447 ~~d~tg-------------------------------~Y~~~f~~~g~~~~~s~~~~~~~~  476 (509)
T KOG2504|consen  447 LYDITG-------------------------------NYDHAFYFCGLCFLLSAVLLLILR  476 (509)
T ss_pred             eeeccC-------------------------------CeeeehhhcChHHHHHHHHHHHhH
Confidence            999998                               599999999988888877776655

>PRK11663 regulatory protein UhpC; Provisional

Probab=99.58  E-value=8.4e-14  Score=138.65  Aligned_cols=174  Identities=10%  Similarity=0.152  Sum_probs=138.1

Q ss_pred             hHHHHHHHHHHHhhhhHHHHHhcHHHHHHHhCCChhHH--HHHHHHHHHhhhhhhhhhhhhhhhhhccCchhHHHHHHHH
Q 017795          136 ADFLLLFFSLVLASGSGLTVIDNLGQICQSLGYADTSI--YVSMISIWNFLGRVGGGYFSEAIVRKFAYPRPVAMAVAQV  213 (366)
Q Consensus       136 ~~~~ll~~~~~~~~~~~~~~~~~l~~i~~~~g~~~~~~--~~sl~~i~~~~g~~~~G~lsD~~grr~~~~R~~~~~~~~~  213 (366)
                      ..++..++.+++.......+...+|++.+++|++..+.  ..+.+.++..++++++|+++||+|||+.+      .++.+
T Consensus        23 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~G~l~dr~g~r~~~------~~~~~   96 (434)
T PRK11663         23 HILITMYLGYALFYFTRKSFNAAMPEMLADLGLSRSDIGLLATLFYITYGVSKFVSGIVSDRSNARYFM------GIGLI   96 (434)
T ss_pred             HHHHHHHHHHHHHHHhhhhHHHhhHHHHHhcCCCHHHHHHHHHHHHHHHHHHHhhhhHHHhhcCCchhH------HHHHH
Confidence            34455556666666555567778999999999988765  78888899999999999999999998755      66666


Q ss_pred             HHHHHHHHHH-hcchhHHHHHHHHHHHHhhhhhhhHHHHHHHhhCCCchhhHHHHHHhHhhhhHHHhhhhHHHHHhhhhh
Q 017795          214 VMAFALLYYA-IGWPGEIYVTTVLVGLSYGAHWAIVPAAASELFGLKSFGALYNFLTLASPAGSLIFSGVIASGIYDYYA  292 (366)
Q Consensus       214 ~~~~~~~l~~-~~~~~~l~~~~~l~G~~~g~~~~~~~~~~se~f~~~~~g~~~g~~~~~~~~G~~i~gp~i~G~l~d~~~  292 (366)
                      +.+++.++.. ..+...+++..++.|++.|..++....++.+.++.++++.+.++.+.+..+|+.+ +|.+.|++.+..+
T Consensus        97 ~~~~~~~~~~~~~~~~~l~~~~~l~g~~~g~~~~~~~~~~~~~~~~~~rg~~~~~~~~~~~~g~~~-~~~~~~~l~~~~g  175 (434)
T PRK11663         97 ATGIINILFGFSSSLWAFALLWVLNAFFQGWGWPVCAKLLTAWYSRTERGGWWAIWNTAHNVGGAL-IPLVVGAIALHYG  175 (434)
T ss_pred             HHHHHHHHHHHHhHHHHHHHHHHHHHHHHHccchHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHccc
Confidence            6666666655 3445566677788899888888888899999999999999999999999999996 9999999998776


Q ss_pred             hhhhhhhhhccCCCCCcccCCCCCCcccCCcchHHHHHHHHHHHHHHHHHHHHHHh
Q 017795          293 EKQAGLLWKYNGNMLPVSFRDQETPTCLGSICYSITCGIMAGLCIIAMVMSLIVVH  348 (366)
Q Consensus       293 ~~~~~~~~~~~~~~~~~~~~~~~~~~c~g~~~~~~~f~i~~~~~~~~~~~~~~~~~  348 (366)
                                                      |++.|++.++++++.++...+..+
T Consensus       176 --------------------------------w~~~f~~~~i~~~~~~~~~~~~~~  199 (434)
T PRK11663        176 --------------------------------WRYGMMIAGIIAIVVGLFLCWRLR  199 (434)
T ss_pred             --------------------------------HHHHHHHHHHHHHHHHHHHHHHcC
Confidence                                            999999988776655544444333

>TIGR00893 2A0114 d-galactonate transporter

Probab=99.58  E-value=4.4e-13  Score=129.11  Aligned_cols=187  Identities=14%  Similarity=0.090  Sum_probs=131.1

Q ss_pred             CCHHHHhhhhHHHHHHHHHHHhhhhHHHHHhcHHHHHHH-hCCChhHH--HHHHHHHHHhhhhhhhhhhhhhhhhhccCc
Q 017795          127 FTLPQALMKADFLLLFFSLVLASGSGLTVIDNLGQICQS-LGYADTSI--YVSMISIWNFLGRVGGGYFSEAIVRKFAYP  203 (366)
Q Consensus       127 ~~~~~~l~~~~~~ll~~~~~~~~~~~~~~~~~l~~i~~~-~g~~~~~~--~~sl~~i~~~~g~~~~G~lsD~~grr~~~~  203 (366)
                      .+.++.++++++|.+.+..++.......+..++|.+.++ +|++....  ..+...+++.++++++|+++||++||+...
T Consensus       206 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~  285 (399)
T TIGR00893       206 YQIKELLKDRRVWGLALGQFLVNIGLGFFLTWFPTYLVQERGLSILEAGFMASLPGIVGFIGMILGGRLSDLLLRRGKSL  285 (399)
T ss_pred             cchHHHhcCHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhcccHHHhhHHHHHHHHHHHHHHHHHHHHHHHHhhcccch
Confidence            356778889999988888888877777888889988754 78876654  677788889999999999999999985220


Q ss_pred             --hhHHHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHhhhhhhhHHHHHHHhhCCCchhhHHHHHHhHhhhhHHHhhh
Q 017795          204 --RPVAMAVAQVVMAFALLYYAIGWPGEIYVTTVLVGLSYGAHWAIVPAAASELFGLKSFGALYNFLTLASPAGSLIFSG  281 (366)
Q Consensus       204 --R~~~~~~~~~~~~~~~~l~~~~~~~~l~~~~~l~G~~~g~~~~~~~~~~se~f~~~~~g~~~g~~~~~~~~G~~i~gp  281 (366)
                        .........++.++........+.....+...+.+.+..+..+...++++|.+|++++|+++++.+....+|+.+ +|
T Consensus       286 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~g~~~-~~  364 (399)
T TIGR00893       286 VFARKTAIIAGLVLSLLMFATNYVNIPYAALALVALGFFGLGAGAIGWALISDNAPGNIAGLTGGLINSLGNLGGIV-GP  364 (399)
T ss_pred             hHHHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHhchhhhhHHHHHHHhhcChhHHHHHHHHHHHHHHHhhhh-hh
Confidence              000111111111111111111112222333333333333367888889999999999999999999999999996 99


Q ss_pred             hHHHHHhhhhhhhhhhhhhhccCCCCCcccCCCCCCcccCCcchHHHHHHHHHHHHHHHHHHHH
Q 017795          282 VIASGIYDYYAEKQAGLLWKYNGNMLPVSFRDQETPTCLGSICYSITCGIMAGLCIIAMVMSLI  345 (366)
Q Consensus       282 ~i~G~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~g~~~~~~~f~i~~~~~~~~~~~~~~  345 (366)
                      .+.|++.|..+                               +|+..|++.+++++++.++.++
T Consensus       365 ~i~g~l~~~~g-------------------------------~~~~~~~~~~~~~~~~~~~~~~  397 (399)
T TIGR00893       365 IVIGAIAATTG-------------------------------SFAGALMVVAALALIGALSYLL  397 (399)
T ss_pred             HHhhhhccCCC-------------------------------chhHHHHHHHHHHHHHHHHHHH
Confidence            99999999776                               3888998888887777665543

>PRK03545 putative arabinose transporter; Provisional

Probab=99.58  E-value=7.9e-14  Score=136.54  Aligned_cols=172  Identities=10%  Similarity=0.121  Sum_probs=135.0

Q ss_pred             HHHHHHHHHHhhhhHHHHHhcHHHHHHHhCCChhHH--HHHHHHHHHhhhhhhhhhhhhhhhhhccCchhHHHHHHHHHH
Q 017795          138 FLLLFFSLVLASGSGLTVIDNLGQICQSLGYADTSI--YVSMISIWNFLGRVGGGYFSEAIVRKFAYPRPVAMAVAQVVM  215 (366)
Q Consensus       138 ~~ll~~~~~~~~~~~~~~~~~l~~i~~~~g~~~~~~--~~sl~~i~~~~g~~~~G~lsD~~grr~~~~R~~~~~~~~~~~  215 (366)
                      +|.+.++.++...........+|++.+++|.+..+.  ..+.+.++..++.+.+|+++||+|||+.+      ..+.++.
T Consensus        11 ~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~------~~~~~~~   84 (390)
T PRK03545         11 VVTLALAAFIFNTTEFVPVGLLSDIAQSFHMQTAQVGLMLTIYAWVVALMSLPLMLLTSNVERRKLL------IGLFVLF   84 (390)
T ss_pred             HHHHHHHHHHHHhHHHHHHcchHHHHhHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHcCCChHHHH------HHHHHHH
Confidence            444444433332233334456899999999988776  77788888889999999999999998755      6666777


Q ss_pred             HHHHHHHH-hcchhHHHHHHHHHHHHhhhhhhhHHHHHHHhhCCCchhhHHHHHHhHhhhhHHHhhhhHHHHHhhhhhhh
Q 017795          216 AFALLYYA-IGWPGEIYVTTVLVGLSYGAHWAIVPAAASELFGLKSFGALYNFLTLASPAGSLIFSGVIASGIYDYYAEK  294 (366)
Q Consensus       216 ~~~~~l~~-~~~~~~l~~~~~l~G~~~g~~~~~~~~~~se~f~~~~~g~~~g~~~~~~~~G~~i~gp~i~G~l~d~~~~~  294 (366)
                      +++.++.. ..+...+++++++.|++.+..++...++++|.+++++|+.+.|+...+..+|..+ ||.+++.+.+..+  
T Consensus        85 ~~~~~~~~~~~~~~~l~~~r~~~G~~~~~~~~~~~~~i~~~~~~~~r~~~~g~~~~~~~~g~~i-g~~l~~~l~~~~g--  161 (390)
T PRK03545         85 IASHVLSALAWNFTVLLISRIGIAFAHAIFWSITASLAIRVAPAGKKAQALSLLATGTALAMVL-GLPLGRVIGQYLG--  161 (390)
T ss_pred             HHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCChhhhhhHHHHHHHHHHHHHHH-HhhHHHHHHHHhc--
Confidence            77766655 4566778888899999988888888899999999999999999999999999996 9999999988776  


Q ss_pred             hhhhhhhccCCCCCcccCCCCCCcccCCcchHHHHHHHHHHHHHHHHHHHHHHh
Q 017795          295 QAGLLWKYNGNMLPVSFRDQETPTCLGSICYSITCGIMAGLCIIAMVMSLIVVH  348 (366)
Q Consensus       295 ~~~~~~~~~~~~~~~~~~~~~~~~c~g~~~~~~~f~i~~~~~~~~~~~~~~~~~  348 (366)
                                                    |++.|++.++++++..+......+
T Consensus       162 ------------------------------w~~~f~~~~~~~~l~~~~~~~~~~  185 (390)
T PRK03545        162 ------------------------------WRTTFLAIGGGALITLLLLIKLLP  185 (390)
T ss_pred             ------------------------------HHHHHHHHHHHHHHHHHHHHHhCC
Confidence                                          999999999887776655544433

>TIGR02332 HpaX 4-hydroxyphenylacetate permease

Probab=99.58  E-value=7.5e-14  Score=138.18  Aligned_cols=180  Identities=12%  Similarity=0.055  Sum_probs=140.1

Q ss_pred             HHHHHHHHHHHhhhhHHHHHhcHHHHHHHhCCChhHH--HHHHHHHHHhhhhhhhhhhhhhhhhhccCchhHHHHHHHHH
Q 017795          137 DFLLLFFSLVLASGSGLTVIDNLGQICQSLGYADTSI--YVSMISIWNFLGRVGGGYFSEAIVRKFAYPRPVAMAVAQVV  214 (366)
Q Consensus       137 ~~~ll~~~~~~~~~~~~~~~~~l~~i~~~~g~~~~~~--~~sl~~i~~~~g~~~~G~lsD~~grr~~~~R~~~~~~~~~~  214 (366)
                      .++++++++++............|.+.+++|.+..+.  ..+.+.++..++.+..|+++||+|||+.+      ..+.++
T Consensus         9 ~~~~~~~~~~~~~~d~~~~~~~~~~l~~~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~G~r~~~------~~~~~~   82 (412)
T TIGR02332         9 LIIFLFILFIFSFLDRINIGFAGLTMGKDLGLSATMFGLAATLFYAAYVICGIPSNIMLAIIGARRWI------AGIMVL   82 (412)
T ss_pred             HHHHHHHHHHHHHhhhhhHHHHHHhhHhhcCCCHHHHHHHHHHHHHHHHHHHhhHHHHHHHhChHHHH------HHHHHH
Confidence            3455566666666666666677788889999998776  78888999999999999999999998755      666666


Q ss_pred             HHHHHHHHH-hcchhHHHHHHHHHHHHhhhhhhhHHHHHHHhhCCCchhhHHHHHHhHhhhhHHHhhhhHHHHHhhhhhh
Q 017795          215 MAFALLYYA-IGWPGEIYVTTVLVGLSYGAHWAIVPAAASELFGLKSFGALYNFLTLASPAGSLIFSGVIASGIYDYYAE  293 (366)
Q Consensus       215 ~~~~~~l~~-~~~~~~l~~~~~l~G~~~g~~~~~~~~~~se~f~~~~~g~~~g~~~~~~~~G~~i~gp~i~G~l~d~~~~  293 (366)
                      ..++.++.+ ..+...+++.+++.|++.++.++....+++|.+++++|+.+.++.+...++|..+ +|.+++++.+..+ 
T Consensus        83 ~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~~~~~~~~~~rg~~~~~~~~~~~~g~~~-~~~~~~~l~~~~~-  160 (412)
T TIGR02332        83 WGIASTATMFATGPESLYLLRILVGIAEAGFLPGILLYLTFWFPAYFRARANALFMIAMPVTMAL-GLILSGYILALDG-  160 (412)
T ss_pred             HHHHHHHHHHhcCHHHHHHHHHHHHHHHhhHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHhCCC-
Confidence            666666655 4566778899999999999988888888999999999999999999999999996 9999998875311 


Q ss_pred             hhhhhhhhccCCCCCcccCCCCCCcccCCcchHHHHHHHHHHHHHHHHHHHHHHhh
Q 017795          294 KQAGLLWKYNGNMLPVSFRDQETPTCLGSICYSITCGIMAGLCIIAMVMSLIVVHR  349 (366)
Q Consensus       294 ~~~~~~~~~~~~~~~~~~~~~~~~~c~g~~~~~~~f~i~~~~~~~~~~~~~~~~~~  349 (366)
                                               ..+..+||++|++.++.+++.+++..++.++
T Consensus       161 -------------------------~~~~~gwr~~f~~~~~~~l~~~~~~~~~~~~  191 (412)
T TIGR02332       161 -------------------------LMALKGWQWLFLLEGFPSVILGVMTWFWLDD  191 (412)
T ss_pred             -------------------------CCCccchhHHHHHHHHHHHHHHHHHhhccCC
Confidence                                     0000139999999888777665555555444

This protein is a part of the Major Facilitator Superfamily (Pfam family pfam07690). Member of this family are found in a number of proteobacterial genomes, but only in the context of having genes for 4-hydroxyphenylacetate (4-HPA) degradation. The protein is characterized by Prieto, et al. (PubMed:9315705) as 4-hydroxyphenylacetate permease in E. coli, where 3-HPA and 3,4-dihydroxyphenylacetate are shown to competitively inhibit 4-HPA transport and therefore also interact specificially.

>COG2271 UhpC Sugar phosphate permease [Carbohydrate transport and metabolism]

Probab=99.57  E-value=1.2e-13  Score=133.18  Aligned_cols=190  Identities=14%  Similarity=0.126  Sum_probs=147.1

Q ss_pred             HHhhhhHHHHHHHHHHHhhhhHHHHHhcHHHHHHH-hCCChhHH--HHHHHHHHHhhhhhhhhhhhhhhhhhccCchhHH
Q 017795          131 QALMKADFLLLFFSLVLASGSGLTVIDNLGQICQS-LGYADTSI--YVSMISIWNFLGRVGGGYFSEAIVRKFAYPRPVA  207 (366)
Q Consensus       131 ~~l~~~~~~ll~~~~~~~~~~~~~~~~~l~~i~~~-~g~~~~~~--~~sl~~i~~~~g~~~~G~lsD~~grr~~~~R~~~  207 (366)
                      ..++|+..|++.++.+..+..-+++.+|.|.++.+ .|++...+  ..+++-.++..|.+++|++|||+-+.+..   ..
T Consensus       247 YVL~Nk~iW~la~a~vfvYivR~gi~dW~p~YL~e~k~~s~~~a~~a~~lfE~agl~G~Ll~GwlSDklfkgrR~---p~  323 (448)
T COG2271         247 YVLKNKLIWLLALANVFVYVVRYGINDWGPLYLSEVKGFSLVKANWAISLFEVAGLPGTLLAGWLSDKLFKGRRG---PM  323 (448)
T ss_pred             HHHcChHHHHHHHHHHHHHHHHHHHhhhHHHHHHHhcCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcccccc---hH
Confidence            36789999999999999999999999999998865 68887766  89999999999999999999998432211   22


Q ss_pred             HHHHHHHHHHHHHHHH-hc--chhHHHHHHHHHHHHhhhhhhhHHHHHHHhhCCCchhhHHHHHHhHhhh-hHHHhhhhH
Q 017795          208 MAVAQVVMAFALLYYA-IG--WPGEIYVTTVLVGLSYGAHWAIVPAAASELFGLKSFGALYNFLTLASPA-GSLIFSGVI  283 (366)
Q Consensus       208 ~~~~~~~~~~~~~l~~-~~--~~~~l~~~~~l~G~~~g~~~~~~~~~~se~f~~~~~g~~~g~~~~~~~~-G~~i~gp~i  283 (366)
                      ..+.++...++...+. ..  +.....++.+++|+...+..-+....+.|..|.+..|++.|+....+.+ |+. ++...
T Consensus       324 ~~i~~~~i~~~~~~~w~~~~~~~~l~~~~l~~iGf~IyGPqmLiGl~a~e~~pK~AaGtA~Gf~Glf~Yl~Ga~-~a~~~  402 (448)
T COG2271         324 ALIFMLLITASLVLYWLAPNGSYLLDAILLFIIGFLIYGPQMLIGLAAAEFVPKKAAGTATGFVGLFAYLIGAA-LAGLP  402 (448)
T ss_pred             HHHHHHHHHHHHHHHHcCCCccHHHHHHHHHHHHHHHhhHHHHHHHHHhccccHhhccchhchhhhHHHHhhHH-hcCCc
Confidence            2333333333333333 22  2345566777889887777777777888999999999999999999999 666 58899


Q ss_pred             HHHHhhhhhhhhhhhhhhccCCCCCcccCCCCCCcccCCcchHHHHHHHHHHHHHHHHHHHHHHhhcHHHHHH
Q 017795          284 ASGIYDYYAEKQAGLLWKYNGNMLPVSFRDQETPTCLGSICYSITCGIMAGLCIIAMVMSLIVVHRTKSVYAQ  356 (366)
Q Consensus       284 ~G~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~g~~~~~~~f~i~~~~~~~~~~~~~~~~~~~r~~~~~  356 (366)
                      .|++.|.+|                                |...|.++.+.++++.++.+.+..+.++.+++
T Consensus       403 ~g~i~d~~g--------------------------------W~g~Fi~~~~~a~l~~lll~~~~~~~~~~~~~  443 (448)
T COG2271         403 LGYIADTWG--------------------------------WDGGFIVLSIAALLAILLLLPVWNAEERKIRD  443 (448)
T ss_pred             ceeeEecCC--------------------------------CcchHHHHHHHHHHHHHHHHHHHhhcchhhhh
Confidence            999999877                                99999999988888888877776665554443

>PRK14995 methyl viologen resistance protein SmvA; Provisional

Probab=99.57  E-value=1.1e-13  Score=140.25  Aligned_cols=173  Identities=11%  Similarity=0.091  Sum_probs=141.9

Q ss_pred             HHHHHHHHHHhhhhHHHHHhcHHHHHHHhCCChhHH--HHHHHHHHHhhhhhhhhhhhhhhhhhccCchhHHHHHHHHHH
Q 017795          138 FLLLFFSLVLASGSGLTVIDNLGQICQSLGYADTSI--YVSMISIWNFLGRVGGGYFSEAIVRKFAYPRPVAMAVAQVVM  215 (366)
Q Consensus       138 ~~ll~~~~~~~~~~~~~~~~~l~~i~~~~g~~~~~~--~~sl~~i~~~~g~~~~G~lsD~~grr~~~~R~~~~~~~~~~~  215 (366)
                      +..+.+++++.......+...+|++.+++|.+..+.  ..+.+.++..++.+.+|+++||+|||+.+      ..+.++.
T Consensus         8 ~~~~~~~~~~~~ld~tiv~~a~p~i~~~l~~s~~~~~~~~~~~~l~~~~~~~~~G~l~D~~Grk~~l------~~~~~~~   81 (495)
T PRK14995          8 LVIIVLVYIPVAIDATVLHVAAPTLSMTLGASGNELLWIIDIYSLVMAGMVLPMGALGDRIGFKRLL------MLGGTLF   81 (495)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHH------HHHHHHH
Confidence            445566777777777778888999999999876554  78888888899999999999999998766      6777777


Q ss_pred             HHHHHHHH-hcchhHHHHHHHHHHHHhhhhhhhHHHHHHHhh-CCCchhhHHHHHHhHhhhhHHHhhhhHHHHHhhhhhh
Q 017795          216 AFALLYYA-IGWPGEIYVTTVLVGLSYGAHWAIVPAAASELF-GLKSFGALYNFLTLASPAGSLIFSGVIASGIYDYYAE  293 (366)
Q Consensus       216 ~~~~~l~~-~~~~~~l~~~~~l~G~~~g~~~~~~~~~~se~f-~~~~~g~~~g~~~~~~~~G~~i~gp~i~G~l~d~~~~  293 (366)
                      +++.++++ ..+...+++++++.|+|.+...+.....+.+.+ ++++|+.+.|+......+|..+ ||.++|++.+..+ 
T Consensus        82 ~~~~~~~~~a~~~~~li~~r~l~G~g~~~~~~~~~~~l~~~~~~~~~r~~~~g~~~~~~~~g~~~-gp~lgg~l~~~~g-  159 (495)
T PRK14995         82 GLASLAAAFSPTASWLIATRALLAIGAAMIVPATLAGIRATFTEEKQRNMALGVWAAVGSGGAAF-GPLVGGILLEHFY-  159 (495)
T ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHH-HHHHHHHhhccCC-
Confidence            77777666 456778888999999999887777777777776 5688999999999999999996 9999999998877 


Q ss_pred             hhhhhhhhccCCCCCcccCCCCCCcccCCcchHHHHHHHHHHHHHHHHHHHHHHhh
Q 017795          294 KQAGLLWKYNGNMLPVSFRDQETPTCLGSICYSITCGIMAGLCIIAMVMSLIVVHR  349 (366)
Q Consensus       294 ~~~~~~~~~~~~~~~~~~~~~~~~~c~g~~~~~~~f~i~~~~~~~~~~~~~~~~~~  349 (366)
                                                     ||+.|++...++++..++..+..++
T Consensus       160 -------------------------------wr~~f~i~~~~~~~~~~l~~~~l~~  184 (495)
T PRK14995        160 -------------------------------WGSVFLINVPIVLVVMGLTARYVPR  184 (495)
T ss_pred             -------------------------------hHHHHHHHHHHHHHHHHHHHHhCCC
Confidence                                           9999999988887776666555443

>PRK10213 nepI ribonucleoside transporter; Reviewed

Probab=99.56  E-value=1.5e-13  Score=135.15  Aligned_cols=156  Identities=12%  Similarity=0.154  Sum_probs=129.0

Q ss_pred             hhhhHHHHHhcHHHHHHHhCCChhHH--HHHHHHHHHhhhhhhhhhhhhhhhhhccCchhHHHHHHHHHHHHHHHHHH-h
Q 017795          148 ASGSGLTVIDNLGQICQSLGYADTSI--YVSMISIWNFLGRVGGGYFSEAIVRKFAYPRPVAMAVAQVVMAFALLYYA-I  224 (366)
Q Consensus       148 ~~~~~~~~~~~l~~i~~~~g~~~~~~--~~sl~~i~~~~g~~~~G~lsD~~grr~~~~R~~~~~~~~~~~~~~~~l~~-~  224 (366)
                      .....+.....+|++.+++|++..+.  .++...++..+++++.|.++||+|||+.+      ..+.++.+++.++.. .
T Consensus        32 ~~~~~~~~~~~l~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~Dr~grr~~~------~~~~~~~~~~~~~~~~~  105 (394)
T PRK10213         32 LIIVEFLPVSLLTPMAQDLGISEGVAGQSVTVTAFVAMFASLFITQTIQATDRRYVV------ILFAVLLTLSCLLVSFA  105 (394)
T ss_pred             HHHHHHHHHhhHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcccCcHHHH------HHHHHHHHHHHHHHHHH
Confidence            33344455567889999999988765  77888899999999999999999998765      666666666666655 4


Q ss_pred             cchhHHHHHHHHHHHHhhhhhhhHHHHHHHhhCCCchhhHHHHHHhHhhhhHHHhhhhHHHHHhhhhhhhhhhhhhhccC
Q 017795          225 GWPGEIYVTTVLVGLSYGAHWAIVPAAASELFGLKSFGALYNFLTLASPAGSLIFSGVIASGIYDYYAEKQAGLLWKYNG  304 (366)
Q Consensus       225 ~~~~~l~~~~~l~G~~~g~~~~~~~~~~se~f~~~~~g~~~g~~~~~~~~G~~i~gp~i~G~l~d~~~~~~~~~~~~~~~  304 (366)
                      .+...+++++++.|++.+..++...++++|.++.++++.+.++...+.++|..+ +|.+++++.+..+            
T Consensus       106 ~~~~~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~~~~a~~~~~~~~~~g~~i-g~~l~~~l~~~~g------------  172 (394)
T PRK10213        106 NSFSLLLIGRACLGLALGGFWAMSASLTMRLVPPRTVPKALSVIFGAVSIALVI-AAPLGSFLGELIG------------  172 (394)
T ss_pred             ChHHHHHHHHHHHHHhhHHHHHHHHHHHHHHcCHhHHHHHHHHHHHHHHHHHHH-HHHHHHHHHhhcC------------
Confidence            556788899999999999989999999999999999999999999999999996 9999999998776            


Q ss_pred             CCCCcccCCCCCCcccCCcchHHHHHHHHHHHHHHHHH
Q 017795          305 NMLPVSFRDQETPTCLGSICYSITCGIMAGLCIIAMVM  342 (366)
Q Consensus       305 ~~~~~~~~~~~~~~c~g~~~~~~~f~i~~~~~~~~~~~  342 (366)
                                          |++.|++.+++++++.+.
T Consensus       173 --------------------w~~~f~~~~~l~~~~~l~  190 (394)
T PRK10213        173 --------------------WRNVFNAAAVMGVLCIFW  190 (394)
T ss_pred             --------------------HHHHHHHHHHHHHHHHHH
Confidence                                999999888766554433

>PRK10091 MFS transport protein AraJ; Provisional

Probab=99.56  E-value=1.5e-13  Score=134.33  Aligned_cols=173  Identities=11%  Similarity=0.087  Sum_probs=141.4

Q ss_pred             hHHHHHHHHHHHhhhhHHHHHhcHHHHHHHhCCChhHH--HHHHHHHHHhhhhhhhhhhhhhhhhhccCchhHHHHHHHH
Q 017795          136 ADFLLLFFSLVLASGSGLTVIDNLGQICQSLGYADTSI--YVSMISIWNFLGRVGGGYFSEAIVRKFAYPRPVAMAVAQV  213 (366)
Q Consensus       136 ~~~~ll~~~~~~~~~~~~~~~~~l~~i~~~~g~~~~~~--~~sl~~i~~~~g~~~~G~lsD~~grr~~~~R~~~~~~~~~  213 (366)
                      +.+|.+.+..++.......+...+|.+.+++|++....  ..+...++..++++.+|+++||+|||+.+      .++.+
T Consensus         3 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~g~r~~~------~~~~~   76 (382)
T PRK10091          3 KVILSLALGTFGLGMAEFGIMGVLTELAHDVGISIPAAGHMISYYALGVVVGAPIIALFSSRYSLKHIL------LFLVA   76 (382)
T ss_pred             chHHHHHHHHHHHHhhHHHHHhChHHHHHHcCCCHHHHhHHHHHHHHHHHHHHHHHHHHHccCccHHHH------HHHHH
Confidence            34666666666666666677788999999999987765  88899999999999999999999998765      66666


Q ss_pred             HHHHHHHHHH-hcchhHHHHHHHHHHHHhhhhhhhHHHHHHHhhCCCchhhHHHHHHhHhhhhHHHhhhhHHHHHhhhhh
Q 017795          214 VMAFALLYYA-IGWPGEIYVTTVLVGLSYGAHWAIVPAAASELFGLKSFGALYNFLTLASPAGSLIFSGVIASGIYDYYA  292 (366)
Q Consensus       214 ~~~~~~~l~~-~~~~~~l~~~~~l~G~~~g~~~~~~~~~~se~f~~~~~g~~~g~~~~~~~~G~~i~gp~i~G~l~d~~~  292 (366)
                      +.+++.++.. ..+...+++.+++.|++.+...+....++.+++++++++.+.++...+..+|..+ ||.+++++.+..+
T Consensus        77 ~~~~~~~l~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~-g~~l~~~l~~~~g  155 (382)
T PRK10091         77 LCVIGNAMFTLSSSYLMLAIGRLVSGFPHGAFFGVGAIVLSKIIKPGKVTAAVAGMVSGMTVANLL-GIPLGTYLSQEFS  155 (382)
T ss_pred             HHHHHHHHHHHhCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCChHHhhHHHHHHHHHHHHHHHH-hccHHHHHhhhcc
Confidence            6677766665 4566778889999999999888888888999999999999999999999999996 9999999988766


Q ss_pred             hhhhhhhhhccCCCCCcccCCCCCCcccCCcchHHHHHHHHHHHHHHHHHHHHHH
Q 017795          293 EKQAGLLWKYNGNMLPVSFRDQETPTCLGSICYSITCGIMAGLCIIAMVMSLIVV  347 (366)
Q Consensus       293 ~~~~~~~~~~~~~~~~~~~~~~~~~~c~g~~~~~~~f~i~~~~~~~~~~~~~~~~  347 (366)
                                                      ||++|++.++++++..+......
T Consensus       156 --------------------------------wr~~f~~~~~~~~~~~~~~~~~l  178 (382)
T PRK10091        156 --------------------------------WRYTFLLIAVFNIAVLASIYFWV  178 (382)
T ss_pred             --------------------------------HHHHHHHHHHHHHHHHHHHHHhC
Confidence                                            99999998887776655444333

>PRK09705 cynX putative cyanate transporter; Provisional

Probab=99.55  E-value=2.2e-13  Score=133.85  Aligned_cols=185  Identities=11%  Similarity=0.051  Sum_probs=137.8

Q ss_pred             HHHHhhhhHHHHHHHHHHHhhhhHHHHHhcHHHHHHHhCCChhHH--HHHHHHHHHhhhhhhhhhhhhhhhhhccCchhH
Q 017795          129 LPQALMKADFLLLFFSLVLASGSGLTVIDNLGQICQSLGYADTSI--YVSMISIWNFLGRVGGGYFSEAIVRKFAYPRPV  206 (366)
Q Consensus       129 ~~~~l~~~~~~ll~~~~~~~~~~~~~~~~~l~~i~~~~g~~~~~~--~~sl~~i~~~~g~~~~G~lsD~~grr~~~~R~~  206 (366)
                      ..+.++++++|.+.+.+++..........++|.+.+++|++...+  ..+++.++..+|+++.|+++||++||+..    
T Consensus       198 ~~~~l~~~~~~~l~~~~~~~~~~~~~~~~~lp~~l~~~g~s~~~ag~~~~~~~i~~i~g~~~~g~l~~r~~~~~~~----  273 (393)
T PRK09705        198 PVRVVFTPRAWTLGVYFGLINGGYASLIAWLPAFYIEIGASAQYSGSLLALMTLGQAAGALLMPAMARHQDRRKLL----  273 (393)
T ss_pred             CcccccCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCChhhhhHHHHHHHHHHHHHHHHHHHHHhhccchHHH----
Confidence            345667888888877776666666678889999999899887655  78889999999999999999999886543    


Q ss_pred             HHHHHHHHHHHHHHHHH-hcchhHHHHHHHHHHHHhhhhhhhHHHHHHHhhC-CCchhhHHHHHHhHhhhhHHHhhhhHH
Q 017795          207 AMAVAQVVMAFALLYYA-IGWPGEIYVTTVLVGLSYGAHWAIVPAAASELFG-LKSFGALYNFLTLASPAGSLIFSGVIA  284 (366)
Q Consensus       207 ~~~~~~~~~~~~~~l~~-~~~~~~l~~~~~l~G~~~g~~~~~~~~~~se~f~-~~~~g~~~g~~~~~~~~G~~i~gp~i~  284 (366)
                        .++..+.+++.+++. ...... .+..++.|++.+..++.......+.++ .+++|+.+|+.+....+++.+ +|.+.
T Consensus       274 --~~~~~l~~~~~~~~~~~~~~~~-~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~~~~~-gp~~~  349 (393)
T PRK09705        274 --MLALVLQLVGFCGFIWLPLQLP-VLWAMVCGLGLGGAFPLCLLLALDHSVQPAIAGKLVAFMQGIGFIIAGL-APWFS  349 (393)
T ss_pred             --HHHHHHHHHHHHHHHHccchHH-HHHHHHHHHhccchHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHHHHH-HHHHH
Confidence              344444444444332 222111 123345677777777777767777775 467899999999999999996 99999


Q ss_pred             HHHhhhhhhhhhhhhhhccCCCCCcccCCCCCCcccCCcchHHHHHHHHHHHHHHHHHHHHHHhhcHH
Q 017795          285 SGIYDYYAEKQAGLLWKYNGNMLPVSFRDQETPTCLGSICYSITCGIMAGLCIIAMVMSLIVVHRTKS  352 (366)
Q Consensus       285 G~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~g~~~~~~~f~i~~~~~~~~~~~~~~~~~~~r~  352 (366)
                      |++.|..|                               +|+..|++.+++++++.++.+++.++++.
T Consensus       350 G~l~~~~g-------------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  386 (393)
T PRK09705        350 GVLRSISG-------------------------------NYLMDWAFHALCVVGLMIITLRFAPARFP  386 (393)
T ss_pred             HHHHHHhC-------------------------------CchHHHHHHHHHHHHHHHHHHHhcccccc
Confidence            99999887                               48999999888888777776666655544

>PRK15403 multidrug efflux system protein MdtM; Provisional

Probab=99.54  E-value=2.7e-13  Score=134.24  Aligned_cols=162  Identities=13%  Similarity=0.080  Sum_probs=129.8

Q ss_pred             hhhHHHHHhcHHHHHHHhCCChhHH--HHHHHHHHHhhhhhhhhhhhhhhhhhccCchhHHHHHHHHHHHHHHHHHH-hc
Q 017795          149 SGSGLTVIDNLGQICQSLGYADTSI--YVSMISIWNFLGRVGGGYFSEAIVRKFAYPRPVAMAVAQVVMAFALLYYA-IG  225 (366)
Q Consensus       149 ~~~~~~~~~~l~~i~~~~g~~~~~~--~~sl~~i~~~~g~~~~G~lsD~~grr~~~~R~~~~~~~~~~~~~~~~l~~-~~  225 (366)
                      ......+...+|++.+++|.+....  .++++.++..++.+.+|+++||+|||+.+      ..+.++.+++.++.. ..
T Consensus        29 ~~~~~~~~p~l~~i~~~~~~~~~~~~~~~s~~~~~~~~~~~~~G~l~dr~Grr~~l------~~~~~~~~~~~~~~~~a~  102 (413)
T PRK15403         29 YLTTDLIQPGIINVVRDFNADVSLAPASVSLYLAGGMALQWLLGPLSDRIGRRPVL------ITGALIFTLACAATLFTT  102 (413)
T ss_pred             HHHHHhhccCHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHhhhHHHHHcCchHHH------HHHHHHHHHHHHHHHHcC
Confidence            3344456677889999999887665  88899999999999999999999998755      555666666666555 44


Q ss_pred             chhHHHHHHHHHHHHhhhhhhhHHHHHHHhhCCCchhhHHHHHHhHhhhhHHHhhhhHHHHHhhhhhhhhhhhhhhccCC
Q 017795          226 WPGEIYVTTVLVGLSYGAHWAIVPAAASELFGLKSFGALYNFLTLASPAGSLIFSGVIASGIYDYYAEKQAGLLWKYNGN  305 (366)
Q Consensus       226 ~~~~l~~~~~l~G~~~g~~~~~~~~~~se~f~~~~~g~~~g~~~~~~~~G~~i~gp~i~G~l~d~~~~~~~~~~~~~~~~  305 (366)
                      +...+++++++.|++.+...+..++++.|.++.++++.++++.+....+|..+ ||.+++.+.+..+             
T Consensus       103 ~~~~l~~~r~l~Gi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-g~~lg~~l~~~~g-------------  168 (413)
T PRK15403        103 SMTQFLIARFIQGTSICFIATVGYVTVQEAFGQTKGIKLMAIITSIVLVAPII-GPLSGAALMHFVH-------------  168 (413)
T ss_pred             CHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHhcC-------------
Confidence            56678889999999887666667788999999999999999999999999996 9999999887665             


Q ss_pred             CCCcccCCCCCCcccCCcchHHHHHHHHHHHHHHHHHHHHHHhh
Q 017795          306 MLPVSFRDQETPTCLGSICYSITCGIMAGLCIIAMVMSLIVVHR  349 (366)
Q Consensus       306 ~~~~~~~~~~~~~c~g~~~~~~~f~i~~~~~~~~~~~~~~~~~~  349 (366)
                                         |++.|++.+++.+++.+..++..++
T Consensus       169 -------------------w~~~f~~~~~~~~i~~~~~~~~lp~  193 (413)
T PRK15403        169 -------------------WKVLFAIIAVMGLIAFVGLLLAMPE  193 (413)
T ss_pred             -------------------HHHHHHHHHHHHHHHHHHHHHhCCC
Confidence                               9999999998877766654444443

>TIGR00900 2A0121 H+ Antiporter protein

Probab=99.54  E-value=1.7e-13  Score=131.20  Aligned_cols=168  Identities=10%  Similarity=-0.016  Sum_probs=131.9

Q ss_pred             HHHHHHHHHhhhhHHHHHhcHHHHHHHhCCChhHH--HHHHHHHHHhhhhhhhhhhhhhhhhhccCchhHHHHHHHHHHH
Q 017795          139 LLLFFSLVLASGSGLTVIDNLGQICQSLGYADTSI--YVSMISIWNFLGRVGGGYFSEAIVRKFAYPRPVAMAVAQVVMA  216 (366)
Q Consensus       139 ~ll~~~~~~~~~~~~~~~~~l~~i~~~~g~~~~~~--~~sl~~i~~~~g~~~~G~lsD~~grr~~~~R~~~~~~~~~~~~  216 (366)
                      |.++++.++...........+|.+..+++.+....  ..++..++..++.+++|+++||+|||+.+      ..+.++.+
T Consensus         2 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~~~~~~~~~i~~~~~G~l~dr~g~r~~~------~~~~~~~~   75 (365)
T TIGR00900         2 RLLFAAQLISLIGTAITQVALPLYVLAGTGSASVLSLAALAGMLPYVVLSPIAGALADRYDRKKVM------IGADLIRA   75 (365)
T ss_pred             eehHHHHHHHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHHHHHhhhHHHHhhchhHHH------HHHHHHHH
Confidence            44555556665555566677888888988887665  77888889999999999999999998655      44444444


Q ss_pred             HHHHHHH-hc-----chhHHHHHHHHHHHHhhhhhhhHHHHHHHhhCCCchhhHHHHHHhHhhhhHHHhhhhHHHHHhhh
Q 017795          217 FALLYYA-IG-----WPGEIYVTTVLVGLSYGAHWAIVPAAASELFGLKSFGALYNFLTLASPAGSLIFSGVIASGIYDY  290 (366)
Q Consensus       217 ~~~~l~~-~~-----~~~~l~~~~~l~G~~~g~~~~~~~~~~se~f~~~~~g~~~g~~~~~~~~G~~i~gp~i~G~l~d~  290 (366)
                      ++.++.. ..     +...+++..++.|++.+...+...++++|.+++++++..+++.+....+|..+ ||.+++.+.+.
T Consensus        76 ~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~-g~~l~~~l~~~  154 (365)
T TIGR00900        76 VLVAVLPFVALLGGLNIWQVYVLAGILAIAQAFFTPAYQAMLPDLVPEEQLTQANSLSQAVRSLFYIV-GPGIGGLMYAT  154 (365)
T ss_pred             HHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHhHHHHHHHHHHHH-HHHHHHHHHHH
Confidence            4433332 22     55677888899999999988999999999999999999999999999999996 99999999987


Q ss_pred             hhhhhhhhhhhccCCCCCcccCCCCCCcccCCcchHHHHHHHHHHHHHHHHHHHH
Q 017795          291 YAEKQAGLLWKYNGNMLPVSFRDQETPTCLGSICYSITCGIMAGLCIIAMVMSLI  345 (366)
Q Consensus       291 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~g~~~~~~~f~i~~~~~~~~~~~~~~  345 (366)
                      .+                                |++.|++.++.++++.+....
T Consensus       155 ~g--------------------------------~~~~~~~~~~~~~~~~~~~~~  177 (365)
T TIGR00900       155 LG--------------------------------IKWAIWVDAVGFAISALLIVS  177 (365)
T ss_pred             hh--------------------------------HHHHHHHHHHHHHHHHHHHHh
Confidence            77                                999998887766665544443

>TIGR01299 synapt_SV2 synaptic vesicle protein SV2

Probab=99.54  E-value=2.6e-13  Score=142.75  Aligned_cols=162  Identities=16%  Similarity=0.146  Sum_probs=122.8

Q ss_pred             HHHhcHHHHHHHhCCChhHH--HHHHHHHHHhhhhhhhhhhhhhhhhhccCchhHHHHHHHHHHHHHHHHHH-hcchhHH
Q 017795          154 TVIDNLGQICQSLGYADTSI--YVSMISIWNFLGRVGGGYFSEAIVRKFAYPRPVAMAVAQVVMAFALLYYA-IGWPGEI  230 (366)
Q Consensus       154 ~~~~~l~~i~~~~g~~~~~~--~~sl~~i~~~~g~~~~G~lsD~~grr~~~~R~~~~~~~~~~~~~~~~l~~-~~~~~~l  230 (366)
                      .+...+|.+.+++|.+....  +.+++.++.++|.+++|+++||+|||+.+      .++.++.+++.++.+ ..+...+
T Consensus       185 ~is~ilp~i~~~~gls~~~~g~l~s~~~lG~iiG~li~G~LsDR~GRR~~l------ii~lil~~i~~ll~afa~s~~~l  258 (742)
T TIGR01299       185 VVGFVLPSAEKDLCIPDSGKGMLGLIVYLGMMVGAFFWGGLADKLGRKQCL------LICLSVNGFFAFFSSFVQGYGFF  258 (742)
T ss_pred             HHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcHHHH------HHHHHHHHHHHHHHHHHhhHHHH
Confidence            35556888888999987665  78888999999999999999999998665      445555555555544 3456678


Q ss_pred             HHHHHHHHHHhhhhhhhHHHHHHHhhCCCchhhHHHHHHhHhhhhHHHhhhhHHHHHhhhhhhhhhhhhhhccCCCCCcc
Q 017795          231 YVTTVLVGLSYGAHWAIVPAAASELFGLKSFGALYNFLTLASPAGSLIFSGVIASGIYDYYAEKQAGLLWKYNGNMLPVS  310 (366)
Q Consensus       231 ~~~~~l~G~~~g~~~~~~~~~~se~f~~~~~g~~~g~~~~~~~~G~~i~gp~i~G~l~d~~~~~~~~~~~~~~~~~~~~~  310 (366)
                      ++++++.|++.|+..+..+++++|.+|.+.||..++++.+...+|.++ ++.+++.+....+...               
T Consensus       259 lv~R~l~G~g~g~~~p~~~~~isE~~p~~~Rg~~~g~~~~~~~iG~il-a~~la~~il~~~G~~~---------------  322 (742)
T TIGR01299       259 LFCRLLSGFGIGGAIPIVFSYFAEFLAQEKRGEHLSWLCMFWMIGGIY-AAAMAWAIIPHYGWSF---------------  322 (742)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHhccchh---------------
Confidence            889999999999999999999999999999999999999999999996 8888877765544110               


Q ss_pred             cCCCCCCcccCCcchHHHHHHHHHHHHHHHH
Q 017795          311 FRDQETPTCLGSICYSITCGIMAGLCIIAMV  341 (366)
Q Consensus       311 ~~~~~~~~c~g~~~~~~~f~i~~~~~~~~~~  341 (366)
                       ..   ...+...+||+.|++.++.++++.+
T Consensus       323 -~~---g~~~~~~gWR~l~~i~~lp~ll~ll  349 (742)
T TIGR01299       323 -QM---GSAYQFHSWRVFVIVCAFPCVFAIG  349 (742)
T ss_pred             -cc---ccccccccHHHHHHHHHHHHHHHHH
Confidence             00   0112233599998887766555443

This model describes a tightly conserved subfamily of the larger family of sugar (and other) transporters described by pfam model pfam00083. Members of this subfamily include closely related forms SV2A and SV2B of synaptic vesicle protein from vertebrates and a more distantly related homolog (below trusted cutoff) from Drosophila melanogaster. Members are predicted to have two sets of six transmembrane helices.

>TIGR00710 efflux_Bcr_CflA drug resistance transporter, Bcr/CflA subfamily

Probab=99.54  E-value=3.1e-13  Score=131.00  Aligned_cols=162  Identities=10%  Similarity=0.115  Sum_probs=131.8

Q ss_pred             hhhHHHHHhcHHHHHHHhCCChhHH--HHHHHHHHHhhhhhhhhhhhhhhhhhccCchhHHHHHHHHHHHHHHHHHH-hc
Q 017795          149 SGSGLTVIDNLGQICQSLGYADTSI--YVSMISIWNFLGRVGGGYFSEAIVRKFAYPRPVAMAVAQVVMAFALLYYA-IG  225 (366)
Q Consensus       149 ~~~~~~~~~~l~~i~~~~g~~~~~~--~~sl~~i~~~~g~~~~G~lsD~~grr~~~~R~~~~~~~~~~~~~~~~l~~-~~  225 (366)
                      ......+...+|.+.+++|.+..+.  ..+.+.++..++.+++|+++||+|||+..      ..+.++.+++.++.. ..
T Consensus        18 ~~~~~~~~~~~p~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~d~~g~r~~~------~~~~~~~~~~~~~~~~~~   91 (385)
T TIGR00710        18 PLGIDMYLPAFPEIAADLSTPASIVQMTLTLYLLGFAAGQLLWGPLSDRYGRRPVL------LLGLFIFALSSLGLALSN   91 (385)
T ss_pred             HHHHHHhcccHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHhhhhHHHhcCChHHH------HHHHHHHHHHHHHHHHHc
Confidence            3344456667899999999988766  78888899999999999999999987654      556666666666554 44


Q ss_pred             chhHHHHHHHHHHHHhhhhhhhHHHHHHHhhCCCchhhHHHHHHhHhhhhHHHhhhhHHHHHhhhhhhhhhhhhhhccCC
Q 017795          226 WPGEIYVTTVLVGLSYGAHWAIVPAAASELFGLKSFGALYNFLTLASPAGSLIFSGVIASGIYDYYAEKQAGLLWKYNGN  305 (366)
Q Consensus       226 ~~~~l~~~~~l~G~~~g~~~~~~~~~~se~f~~~~~g~~~g~~~~~~~~G~~i~gp~i~G~l~d~~~~~~~~~~~~~~~~  305 (366)
                      +...+++..++.|++.+...+...+++.|.+++++++..+++.+....+|..+ +|.++|.+.+..+             
T Consensus        92 ~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~-g~~~~~~l~~~~~-------------  157 (385)
T TIGR00710        92 NIETLLVLRFVQAFGASAGSVISQALVRDIYPGEELSRIYSILMPVLALAPAV-APLLGGYILVWLS-------------  157 (385)
T ss_pred             cHHHHHHHHHHHHcchhHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHcC-------------
Confidence            55677788899999999888999999999999999999999999999999996 9999999988776             


Q ss_pred             CCCcccCCCCCCcccCCcchHHHHHHHHHHHHHHHHHHHHHHhh
Q 017795          306 MLPVSFRDQETPTCLGSICYSITCGIMAGLCIIAMVMSLIVVHR  349 (366)
Q Consensus       306 ~~~~~~~~~~~~~c~g~~~~~~~f~i~~~~~~~~~~~~~~~~~~  349 (366)
                                         |++.|++.++++++..+...+..++
T Consensus       158 -------------------~~~~~~~~~~~~~~~~~~~~~~~~~  182 (385)
T TIGR00710       158 -------------------WHAIFAFLSLAGILLSALIFFILPE  182 (385)
T ss_pred             -------------------HHHHHHHHHHHHHHHHHHHHHhCCC
Confidence                               9999999888777766665554433

This subfamily of drug efflux proteins, a part of the major faciliator family, is predicted to have 12 membrane-spanning regions. Members with known activity include Bcr (bicyclomycin resistance protein) in E. coli, Flor (chloramphenicol and florfenicol resistance) in Salmonella typhimurium DT104, and CmlA (chloramphenicol resistance) in Pseudomonas sp. plasmid R1033.

>PRK11551 putative 3-hydroxyphenylpropionic transporter MhpT; Provisional

Probab=99.54  E-value=3.3e-13  Score=132.51  Aligned_cols=172  Identities=14%  Similarity=0.087  Sum_probs=126.8

Q ss_pred             HHHHHHHHHHhhhhHHHHHhcHHHHHHHhCCChhHH--HHHHHHHHHhhhhhhhhhhhhhhhhhccCchhHHHHHHHHHH
Q 017795          138 FLLLFFSLVLASGSGLTVIDNLGQICQSLGYADTSI--YVSMISIWNFLGRVGGGYFSEAIVRKFAYPRPVAMAVAQVVM  215 (366)
Q Consensus       138 ~~ll~~~~~~~~~~~~~~~~~l~~i~~~~g~~~~~~--~~sl~~i~~~~g~~~~G~lsD~~grr~~~~R~~~~~~~~~~~  215 (366)
                      .+.++..+++.......+..++|.+.++.|++....  ..+...++..+++++.|+++||++||+..      ....+..
T Consensus       222 ~~~~~~~~~~~~~~~~~~~~~~p~~~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~~~~~------~~~~~~~  295 (406)
T PRK11551        222 TLLLWISYFFTLIVLYFLLNWLPSLLVGQGLSRSQAGLVQIAFNIGGALGSLLIGALMDRLRPRRVV------LLIYAGI  295 (406)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCChhhhhHHHHHHHHHHHHHHHHHHHHHHHHhHHHHH------HHHHHHH
Confidence            344444444444455566778999999999887654  67778889999999999999999987544      3333444


Q ss_pred             HHHHHHHH-hcchhHHHHHHHHHHHHhhhhhhhHHHHHHHhhCCCchhhHHHHHHhHhhhhHHHhhhhHHHHHhhhhhhh
Q 017795          216 AFALLYYA-IGWPGEIYVTTVLVGLSYGAHWAIVPAAASELFGLKSFGALYNFLTLASPAGSLIFSGVIASGIYDYYAEK  294 (366)
Q Consensus       216 ~~~~~l~~-~~~~~~l~~~~~l~G~~~g~~~~~~~~~~se~f~~~~~g~~~g~~~~~~~~G~~i~gp~i~G~l~d~~~~~  294 (366)
                      +++.+++. ..+...+++..++.|++.++..+..+++++|.+|++++|+..|+.+....+|+.+ ||.++|+++|..+  
T Consensus       296 ~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~~-g~~~~g~l~~~~~--  372 (406)
T PRK11551        296 LASLAALAAAPSFAGMLLAGFAAGLFVVGGQSVLYALAPLFYPTQVRGTGVGAAVAVGRLGSMA-GPLLAGQLLALGR--  372 (406)
T ss_pred             HHHHHHHHhcCcHHHHHHHHHHHHHHHHhHHHHHHHHHHHHcchhhhhhhhhHHHHhhhHHHHH-HhhhHhhhhccCC--
Confidence            44444333 3344455666677888877778888899999999999999999999999999996 9999999998755  


Q ss_pred             hhhhhhhccCCCCCcccCCCCCCcccCCcchHHHHHHHHHHHHHHHHHHHHHH
Q 017795          295 QAGLLWKYNGNMLPVSFRDQETPTCLGSICYSITCGIMAGLCIIAMVMSLIVV  347 (366)
Q Consensus       295 ~~~~~~~~~~~~~~~~~~~~~~~~c~g~~~~~~~f~i~~~~~~~~~~~~~~~~  347 (366)
                                                   .|...+++.+.+.+++.++.+.+.
T Consensus       373 -----------------------------~~~~~~~~~~~~~~~~~~~~~~~~  396 (406)
T PRK11551        373 -----------------------------STVGVIGASIPVILVAALAALLLV  396 (406)
T ss_pred             -----------------------------chHHHHHHHHHHHHHHHHHHHHHh
Confidence                                         277777777766666665555443

>TIGR00711 efflux_EmrB drug resistance transporter, EmrB/QacA subfamily

Probab=99.53  E-value=1.4e-13  Score=138.09  Aligned_cols=171  Identities=12%  Similarity=0.168  Sum_probs=139.8

Q ss_pred             HHHHHHHHhhhhHHHHHhcHHHHHHHhCCChhHH--HHHHHHHHHhhhhhhhhhhhhhhhhhccCchhHHHHHHHHHHHH
Q 017795          140 LLFFSLVLASGSGLTVIDNLGQICQSLGYADTSI--YVSMISIWNFLGRVGGGYFSEAIVRKFAYPRPVAMAVAQVVMAF  217 (366)
Q Consensus       140 ll~~~~~~~~~~~~~~~~~l~~i~~~~g~~~~~~--~~sl~~i~~~~g~~~~G~lsD~~grr~~~~R~~~~~~~~~~~~~  217 (366)
                      .+.++.++...........+|.+.+++|.+..+.  ..+.+.++..++.++.|+++||+|||+.+      ..+.++.++
T Consensus         6 ~~~~~~~~~~~~~~~~~~~~p~~~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~------~~~~~~~~~   79 (485)
T TIGR00711         6 VLMLGTFMAVLDSTIVNVAIPTIAGDLGSSLSQVQWVITSYMLANAISIPLTGWLAKRFGTRRLF------LISTFAFTL   79 (485)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhcCCChhhhhHHHHHHHHHHHHHHHhHHHHHHHhCcHHHH------HHHHHHHHH
Confidence            3444555555555667778999999999987655  78888999999999999999999998655      666666677


Q ss_pred             HHHHHH-hcchhHHHHHHHHHHHHhhhhhhhHHHHHHHhhCCCchhhHHHHHHhHhhhhHHHhhhhHHHHHhhhhhhhhh
Q 017795          218 ALLYYA-IGWPGEIYVTTVLVGLSYGAHWAIVPAAASELFGLKSFGALYNFLTLASPAGSLIFSGVIASGIYDYYAEKQA  296 (366)
Q Consensus       218 ~~~l~~-~~~~~~l~~~~~l~G~~~g~~~~~~~~~~se~f~~~~~g~~~g~~~~~~~~G~~i~gp~i~G~l~d~~~~~~~  296 (366)
                      +.++.. ..+...+++++++.|++.+...+...+++.|.+++++++.+.++......+|..+ ||.++|++.+..+    
T Consensus        80 ~~~~~~~~~~~~~l~~~~~~~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~-g~~~~~~l~~~~~----  154 (485)
T TIGR00711        80 GSLLCGVAPNLELMIIFRVIQGFGGGPLIPLSFSTLLNIYPPEKRGRAMAIWGLTVLVAPAL-GPTLGGWIIENYH----  154 (485)
T ss_pred             HHHHHhCcCCHHHHHHHHHHHHhhhhhHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHhhh-hhccHhHhccCcC----
Confidence            766665 4556678889999999999988999999999999999999999999999999996 9999999998776    


Q ss_pred             hhhhhccCCCCCcccCCCCCCcccCCcchHHHHHHHHHHHHHHHHHHHHHHhh
Q 017795          297 GLLWKYNGNMLPVSFRDQETPTCLGSICYSITCGIMAGLCIIAMVMSLIVVHR  349 (366)
Q Consensus       297 ~~~~~~~~~~~~~~~~~~~~~~c~g~~~~~~~f~i~~~~~~~~~~~~~~~~~~  349 (366)
                                                  |++.|++.+.+++++.++..++.++
T Consensus       155 ----------------------------w~~~f~~~~~~~~~~~~~~~~~~~~  179 (485)
T TIGR00711       155 ----------------------------WRWIFLINVPIGIIVVVVAFFILPR  179 (485)
T ss_pred             ----------------------------ceehhhhhhHHHHHHHHHHHHHcCC
Confidence                                        9999999888877776666555443

This subfamily of drug efflux proteins, a part of the major faciliator family, is predicted to have 14 potential membrane-spanning regions. Members with known activities include EmrB (multiple drug resistance efflux pump) in E. coli, FarB (antibacterial fatty acid resistance) in Neisseria gonorrhoeae, TcmA (tetracenomycin C resistance) in Streptomyces glaucescens, etc. In most cases, the efflux pump is described as having a second component encoded in the same operon, such as EmrA of E. coli.

>PF07690 MFS_1: Major Facilitator Superfamily; InterPro: IPR011701 Among the different families of transporter, only two occur ubiquitously in all classifications of organisms

Probab=99.53  E-value=7.1e-14  Score=133.36  Aligned_cols=164  Identities=18%  Similarity=0.246  Sum_probs=132.7

Q ss_pred             HHHHHhhhhHHHHHhcHH-HHHHHhCCChhHH--HHHHHHHHHhhhhhhhhhhhhhhhhhccCchhHHHHHHHHHHHHHH
Q 017795          143 FSLVLASGSGLTVIDNLG-QICQSLGYADTSI--YVSMISIWNFLGRVGGGYFSEAIVRKFAYPRPVAMAVAQVVMAFAL  219 (366)
Q Consensus       143 ~~~~~~~~~~~~~~~~l~-~i~~~~g~~~~~~--~~sl~~i~~~~g~~~~G~lsD~~grr~~~~R~~~~~~~~~~~~~~~  219 (366)
                      ++.++.......+...+| .+.+++|.+..+.  ..+...++..++.+.+|+++||+|||+..      ..+.++.+++.
T Consensus         3 l~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~r~~l------~~~~~~~~~~~   76 (352)
T PF07690_consen    3 LAFFLSGFGFSIISPALPLYLAEELGLSPSQIGLLFSAFFLGSALFSPFAGYLSDRFGRRRVL------IIGLLLFALGS   76 (352)
T ss_dssp             HHHHHHHHHHHHHHHHHH-HHHCCSTTTSHCHHHHHHHHHHHHHHHHHHHHHHHHHS-HHHHH------HHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCeeeE------eehhhhhhhHH
Confidence            344445555555666777 6778899887765  78888899999999999999999987654      66666666664


Q ss_pred             HHHHh-cchhHHHHHHHHHHHHhhhhhhhHHHHHHHhhCCCchhhHHHHHHhHhhhhHHHhhhhHHHHHhhhhhhhhhhh
Q 017795          220 LYYAI-GWPGEIYVTTVLVGLSYGAHWAIVPAAASELFGLKSFGALYNFLTLASPAGSLIFSGVIASGIYDYYAEKQAGL  298 (366)
Q Consensus       220 ~l~~~-~~~~~l~~~~~l~G~~~g~~~~~~~~~~se~f~~~~~g~~~g~~~~~~~~G~~i~gp~i~G~l~d~~~~~~~~~  298 (366)
                      ++... .+...++++.++.|++.+...+...++++|.++.++++..+++......+|..+ +|.+++++.+..+      
T Consensus        77 ~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~g~~~-g~~l~~~l~~~~~------  149 (352)
T PF07690_consen   77 LLLAFASNFWLLLIARFLLGIGSGFFSPASNALIADWFPPEERGRAFGILSAGFSLGSIL-GPLLGGFLISYFG------  149 (352)
T ss_dssp             HHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCTCCHHHHHHHHHHHHHHHHHH-HHHHHHHCCCHCH------
T ss_pred             HHhhhhhhHHHHhhhccccccccccccccccccccccchhhhhhhccccccchhhhhhhc-ccchhhhhhhccc------
Confidence            44333 555578889999999999999999999999999999999999999999999996 9999999998777      


Q ss_pred             hhhccCCCCCcccCCCCCCcccCCcchHHHHHHHHHHHHHHHHHHHH
Q 017795          299 LWKYNGNMLPVSFRDQETPTCLGSICYSITCGIMAGLCIIAMVMSLI  345 (366)
Q Consensus       299 ~~~~~~~~~~~~~~~~~~~~c~g~~~~~~~f~i~~~~~~~~~~~~~~  345 (366)
                                                |++.|++.+++++++.++...
T Consensus       150 --------------------------~~~~~~~~~~~~~~~~il~~~  170 (352)
T PF07690_consen  150 --------------------------WRWAFLISAILSLIAAILFIL  170 (352)
T ss_dssp             --------------------------HCCHHHHHHHHHHHHHHHHHC
T ss_pred             --------------------------cccccccccchhhhhhhhHhh
Confidence                                      999999999988887764333

These are the ATP-Binding Cassette (ABC) superfamily and the Major Facilitator Superfamily (MFS). The MFS transporters are single-polypeptide secondary carriers capable only of transporting small solutes in response to chemiosmotic ion gradients [, ].; GO: 0055085 transmembrane transport, 0016021 integral to membrane; PDB: 2GFP_B 3O7P_A 3O7Q_A 1PW4_A.

>PRK10054 putative transporter; Provisional

Probab=99.53  E-value=4.3e-13  Score=132.05  Aligned_cols=173  Identities=11%  Similarity=0.054  Sum_probs=131.7

Q ss_pred             HHHHHHHHHHHhhhhHHHHHhcHHHHH-HHhCCChhHH--HHHHHHHHHhhhhhhhhhhhhhhhhhccCchhHHHHHHHH
Q 017795          137 DFLLLFFSLVLASGSGLTVIDNLGQIC-QSLGYADTSI--YVSMISIWNFLGRVGGGYFSEAIVRKFAYPRPVAMAVAQV  213 (366)
Q Consensus       137 ~~~ll~~~~~~~~~~~~~~~~~l~~i~-~~~g~~~~~~--~~sl~~i~~~~g~~~~G~lsD~~grr~~~~R~~~~~~~~~  213 (366)
                      ++|.+.+..++..........++|.+. +++|++..++  ..++..+...++++..|+++||+|||+..      ..+.+
T Consensus         8 ~~~~l~~~~~~~~~g~~~~~~~l~~~l~~~~g~s~~~~g~~~s~~~~~~~~~~~~~G~l~Dr~g~k~~~------~~~~~   81 (395)
T PRK10054          8 STSALLASSLLLTIGRGATLPFMTIYLSRQYSLSVDLIGYAMTIALTIGVVFSLGFGILADKFDKKRYM------LLAIT   81 (395)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCcchhH------HHHHH
Confidence            477777777777777667777777766 5689998776  77777888899999999999999998654      45555


Q ss_pred             HHHHHHHHHH-hcchhHHHHHHHHHHHHhhhhhhhHHHHHHHhhCCCchhhHHHHHHhHhhhhHHHhhhhHHHHHhhhhh
Q 017795          214 VMAFALLYYA-IGWPGEIYVTTVLVGLSYGAHWAIVPAAASELFGLKSFGALYNFLTLASPAGSLIFSGVIASGIYDYYA  292 (366)
Q Consensus       214 ~~~~~~~l~~-~~~~~~l~~~~~l~G~~~g~~~~~~~~~~se~f~~~~~g~~~g~~~~~~~~G~~i~gp~i~G~l~d~~~  292 (366)
                      +.+++.+++. ..+...++++..+.|.+.+...+...++.+|.++++++++++++.+...++|..+ ||.+++++++ .+
T Consensus        82 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~lg~~i-gp~l~~~l~~-~g  159 (395)
T PRK10054         82 AFASGFIAIPLVNNVTLVVLFFALINCAYSVFSTVLKAWFADNLSSTSKTKIFSLNYTMLNIGWTV-GPPLGTLLVM-QS  159 (395)
T ss_pred             HHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHhHHHHHHHHHHHHHHHHHHH-HHHHHHHHHH-hc
Confidence            5555555554 3344445555666676666666777888999999999999999999999999996 9999999874 44


Q ss_pred             hhhhhhhhhccCCCCCcccCCCCCCcccCCcchHHHHHHHHHHHHHHHHHHHHHHhh
Q 017795          293 EKQAGLLWKYNGNMLPVSFRDQETPTCLGSICYSITCGIMAGLCIIAMVMSLIVVHR  349 (366)
Q Consensus       293 ~~~~~~~~~~~~~~~~~~~~~~~~~~c~g~~~~~~~f~i~~~~~~~~~~~~~~~~~~  349 (366)
                                                      |+..|++.+++++++.++..++.+|
T Consensus       160 --------------------------------~~~~f~~~~~~~~i~~i~~~~~~~~  184 (395)
T PRK10054        160 --------------------------------INLPFWLAAICSAFPLVFIQIWVQR  184 (395)
T ss_pred             --------------------------------cCcHHHHHHHHHHHHHHHHHHHHhc
Confidence                                            9999998888777766555554433

>TIGR00893 2A0114 d-galactonate transporter

Probab=99.52  E-value=1.2e-13  Score=133.01  Aligned_cols=162  Identities=17%  Similarity=0.149  Sum_probs=133.1

Q ss_pred             hhhhHHHHHhcHHHHHHHhCCChhHH--HHHHHHHHHhhhhhhhhhhhhhhhhhccCchhHHHHHHHHHHHHHHHHHH-h
Q 017795          148 ASGSGLTVIDNLGQICQSLGYADTSI--YVSMISIWNFLGRVGGGYFSEAIVRKFAYPRPVAMAVAQVVMAFALLYYA-I  224 (366)
Q Consensus       148 ~~~~~~~~~~~l~~i~~~~g~~~~~~--~~sl~~i~~~~g~~~~G~lsD~~grr~~~~R~~~~~~~~~~~~~~~~l~~-~  224 (366)
                      .......+....|++.+++|++....  ..+...++..++.+++|+++||+|||+..      ..+.++.+++..+++ .
T Consensus         6 ~~~~~~~~~~~~~~~~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~r~~~------~~~~~~~~~~~~~~~~~   79 (399)
T TIGR00893         6 NYLDRANLSFAAPMLQEDLGLSAAQYGYVFSAFSWGYVVGQFPGGWLLDRFGARKTL------AVFIVIWGVFTGLQAFA   79 (399)
T ss_pred             HHHHHHhhhHhHHHHHHhhCCChhhHHHHHHHHHHHHHHHHHhHHHHHHhcCcceee------HHHHHHHHHHHHHHHHH
Confidence            33444556667788889999987765  78888999999999999999999998876      556666666655554 4


Q ss_pred             cchhHHHHHHHHHHHHhhhhhhhHHHHHHHhhCCCchhhHHHHHHhHhhhhHHHhhhhHHHHHhhhhhhhhhhhhhhccC
Q 017795          225 GWPGEIYVTTVLVGLSYGAHWAIVPAAASELFGLKSFGALYNFLTLASPAGSLIFSGVIASGIYDYYAEKQAGLLWKYNG  304 (366)
Q Consensus       225 ~~~~~l~~~~~l~G~~~g~~~~~~~~~~se~f~~~~~g~~~g~~~~~~~~G~~i~gp~i~G~l~d~~~~~~~~~~~~~~~  304 (366)
                      .+...++++.++.|++.+..++....+++|.+++++|+...++......+|..+ +|.+++.+.+..+            
T Consensus        80 ~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~-~~~~~~~l~~~~~------------  146 (399)
T TIGR00893        80 GAYVSLYILRVLLGAAEAPFFPGIILIVASWFPASERATAVSIFNSAQGLGGII-GGPLVGWILIHFS------------  146 (399)
T ss_pred             cCHHHHHHHHHHHHHHHHhhhhHHHHHHHHhCCHHHHHHHHHHHHHhchHHHHH-HHHHHHHHHHhCC------------
Confidence            466778889999999999999999999999999999999999999999999996 9999999988776            


Q ss_pred             CCCCcccCCCCCCcccCCcchHHHHHHHHHHHHHHHHHHHHHHh
Q 017795          305 NMLPVSFRDQETPTCLGSICYSITCGIMAGLCIIAMVMSLIVVH  348 (366)
Q Consensus       305 ~~~~~~~~~~~~~~c~g~~~~~~~f~i~~~~~~~~~~~~~~~~~  348 (366)
                                          |++.|++.++++++..++..++.+
T Consensus       147 --------------------~~~~~~~~~~~~~~~~~~~~~~~~  170 (399)
T TIGR00893       147 --------------------WQWAFIIEGVLGIIWGVLWLKFIP  170 (399)
T ss_pred             --------------------chHHHHHHHHHHHHHHHHhhheec
Confidence                                999999988877776665555443

>PRK11551 putative 3-hydroxyphenylpropionic transporter MhpT; Provisional

Probab=99.52  E-value=1.1e-12  Score=128.77  Aligned_cols=171  Identities=17%  Similarity=0.113  Sum_probs=130.8

Q ss_pred             HHHHHHHHhhhhHHHHHhcHHHHHHHhCCChhHH--HHHHHHHHHhhhhhhhhhhhhhhhhhccCchhHHHHHHHHHHHH
Q 017795          140 LLFFSLVLASGSGLTVIDNLGQICQSLGYADTSI--YVSMISIWNFLGRVGGGYFSEAIVRKFAYPRPVAMAVAQVVMAF  217 (366)
Q Consensus       140 ll~~~~~~~~~~~~~~~~~l~~i~~~~g~~~~~~--~~sl~~i~~~~g~~~~G~lsD~~grr~~~~R~~~~~~~~~~~~~  217 (366)
                      +.++..++............|.+.+++|++..+.  ..+...++..++.+.+|+++||+|||+..      ..+.++..+
T Consensus        19 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~------~~~~~~~~~   92 (406)
T PRK11551         19 LCFLVALLEGLDLQSAGVAAPRMAQEFGLDVAQMGWAFSAGILGLLPGALLGGRLADRIGRKRIL------IVSVALFGL   92 (406)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchhH------HHHHHHHHH
Confidence            3333444444444445556788999999988765  78888889999999999999999998765      445555555


Q ss_pred             HHHHHH-hcchhHHHHHHHHHHHHhhhhhhhHHHHHHHhhCCCchhhHHHHHHhHhhhhHHHhhhhHHHHHhhhhhhhhh
Q 017795          218 ALLYYA-IGWPGEIYVTTVLVGLSYGAHWAIVPAAASELFGLKSFGALYNFLTLASPAGSLIFSGVIASGIYDYYAEKQA  296 (366)
Q Consensus       218 ~~~l~~-~~~~~~l~~~~~l~G~~~g~~~~~~~~~~se~f~~~~~g~~~g~~~~~~~~G~~i~gp~i~G~l~d~~~~~~~  296 (366)
                      +.++.. ..+...+++..++.|++.+...+...+++.|.+++++++.+.++.+....+|..+ +|.+++.+.+..+    
T Consensus        93 ~~~~~~~~~~~~~~~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~-~~~~~~~~~~~~~----  167 (406)
T PRK11551         93 FSLATAQAWDFPSLLVARLLTGVGLGGALPNLIALTSEAVGPRLRGTAVSLMYCGVPFGGAL-ASVIGVLAAGDAA----  167 (406)
T ss_pred             HHHHHHHhccHHHHHHHHHHHHhhHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHccccC----
Confidence            544444 4556677888899999999888888999999999999999999999999999996 8988888777665    


Q ss_pred             hhhhhccCCCCCcccCCCCCCcccCCcchHHHHHHHHHHHHHHHHHHHHHHhh
Q 017795          297 GLLWKYNGNMLPVSFRDQETPTCLGSICYSITCGIMAGLCIIAMVMSLIVVHR  349 (366)
Q Consensus       297 ~~~~~~~~~~~~~~~~~~~~~~c~g~~~~~~~f~i~~~~~~~~~~~~~~~~~~  349 (366)
                                                  |++.|++.+++.++..++...+.++
T Consensus       168 ----------------------------~~~~~~~~~~~~~~~~~~~~~~l~~  192 (406)
T PRK11551        168 ----------------------------WRHIFYVGGVGPLLLVPLLMRWLPE  192 (406)
T ss_pred             ----------------------------HHHHHHHHHHHHHHHHHHHHHhCCC
Confidence                                        9999998877666655544444444

>PRK10473 multidrug efflux system protein MdtL; Provisional

Probab=99.50  E-value=1.1e-12  Score=128.39  Aligned_cols=168  Identities=13%  Similarity=0.114  Sum_probs=132.7

Q ss_pred             HHHHHhhhhHHHHHhcHHHHHHHhCCChhHH--HHHHHHHHHhhhhhhhhhhhhhhhhhccCchhHHHHHHHHHHHHHHH
Q 017795          143 FSLVLASGSGLTVIDNLGQICQSLGYADTSI--YVSMISIWNFLGRVGGGYFSEAIVRKFAYPRPVAMAVAQVVMAFALL  220 (366)
Q Consensus       143 ~~~~~~~~~~~~~~~~l~~i~~~~g~~~~~~--~~sl~~i~~~~g~~~~G~lsD~~grr~~~~R~~~~~~~~~~~~~~~~  220 (366)
                      +..+........+...+|++.+++|.+....  ..+.+.++..++.++.|+++||+|||+..      ..+.++.+++.+
T Consensus        10 ~~~~~~~~~~~~~~~~lp~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~G~l~Dr~g~r~~l------~~~~~~~~i~~~   83 (392)
T PRK10473         10 ALVLLYPAGIDMYLVGLPRIAADLNASEAQLHIAFSVYLAGMAAAMLFAGKIADRSGRKPVA------IPGAALFIIASL   83 (392)
T ss_pred             HHHHHHHHHHHHHhhhHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHhHhHHHHHhCChHHH------HHHHHHHHHHHH
Confidence            3334444444556678999999999988765  67788888899999999999999987644      556666666666


Q ss_pred             HHH-hcchhHHHHHHHHHHHHhhhhhhhHHHHHHHhhCCCchhhHHHHHHhHhhhhHHHhhhhHHHHHhhhhhhhhhhhh
Q 017795          221 YYA-IGWPGEIYVTTVLVGLSYGAHWAIVPAAASELFGLKSFGALYNFLTLASPAGSLIFSGVIASGIYDYYAEKQAGLL  299 (366)
Q Consensus       221 l~~-~~~~~~l~~~~~l~G~~~g~~~~~~~~~~se~f~~~~~g~~~g~~~~~~~~G~~i~gp~i~G~l~d~~~~~~~~~~  299 (366)
                      ++. ..+...+++..++.|++.+..++...+++.|.++.++|+...++.+....+|..+ +|.+++.+.+..+       
T Consensus        84 ~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~i~~~~-~~~i~~~l~~~~g-------  155 (392)
T PRK10473         84 LCSLAETSSLFLAGRFLQGIGAGCCYVVAFAILRDTLDDRRRAKVLSLLNGITCIIPVL-APVLGHLIMLKFP-------  155 (392)
T ss_pred             HHHHhCcHHHHHHHHHHHHhhhhHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHhCcC-------
Confidence            555 3445567778889999988888888999999999999999999999999999885 8999998887665       


Q ss_pred             hhccCCCCCcccCCCCCCcccCCcchHHHHHHHHHHHHHHHHHHHHHHhh
Q 017795          300 WKYNGNMLPVSFRDQETPTCLGSICYSITCGIMAGLCIIAMVMSLIVVHR  349 (366)
Q Consensus       300 ~~~~~~~~~~~~~~~~~~~c~g~~~~~~~f~i~~~~~~~~~~~~~~~~~~  349 (366)
                                               |++.|++.++++++..++.+...++
T Consensus       156 -------------------------~~~~~~~~~~~~~i~~~~~~~~~~~  180 (392)
T PRK10473        156 -------------------------WQSLFYTMAAMGILVLLLSLFILKE  180 (392)
T ss_pred             -------------------------hHHHHHHHHHHHHHHHHHHHHHcCC
Confidence                                     9999999988887777666555444

>TIGR00903 2A0129 major facilitator 4 family protein

Probab=99.50  E-value=5.7e-13  Score=130.13  Aligned_cols=160  Identities=10%  Similarity=0.014  Sum_probs=124.6

Q ss_pred             hhHHHHHhcHHHHHHHhCCChhHH--HHHHHHHHHhhhhhhhhhhhhhhhhhccCchhHHHHHHHHHHHHHHHHHHh-cc
Q 017795          150 GSGLTVIDNLGQICQSLGYADTSI--YVSMISIWNFLGRVGGGYFSEAIVRKFAYPRPVAMAVAQVVMAFALLYYAI-GW  226 (366)
Q Consensus       150 ~~~~~~~~~l~~i~~~~g~~~~~~--~~sl~~i~~~~g~~~~G~lsD~~grr~~~~R~~~~~~~~~~~~~~~~l~~~-~~  226 (366)
                      .....+...+|++.+++|.+..+.  ..+.+.++..++.+..|+++||+|||+..      .........+.+.... .+
T Consensus         5 ~~~~~~~~~lp~i~~~~~~s~~~~g~~~s~~~~g~~i~~~~~G~l~Dr~grr~~~------~~~~~~~~~~~~~~~~~~~   78 (368)
T TIGR00903         5 AIWVTFSPVLSLVAEDIDVSKEELGLLAITYPAAFLALTIPSGLLLDRAFKRWFL------FGSLATFAAAAGRLLDPFN   78 (368)
T ss_pred             HHHHHHHhhHHHHHHHhCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHccchHHH------HHHHHHHHHHHHHHHHhcc
Confidence            344567778999999999998776  78888899999999999999999987543      3333333333222222 45


Q ss_pred             hhHHHHHHHHHHHHhhhhhhhHHHHHHHhhCCCchhhHHHHHHhHhhhhHHHhhhhHHHHHhhhhhhhhhhhhhhccCCC
Q 017795          227 PGEIYVTTVLVGLSYGAHWAIVPAAASELFGLKSFGALYNFLTLASPAGSLIFSGVIASGIYDYYAEKQAGLLWKYNGNM  306 (366)
Q Consensus       227 ~~~l~~~~~l~G~~~g~~~~~~~~~~se~f~~~~~g~~~g~~~~~~~~G~~i~gp~i~G~l~d~~~~~~~~~~~~~~~~~  306 (366)
                      ...+++++++.|++.+. .......++|.+++++|+++.++...+.++|..+ ++.+++++.+..+              
T Consensus        79 ~~~l~~~R~l~G~g~~~-~~~~~~~~~~~~~~~~r~~a~~~~~~~~~lG~~l-~~~~~~~l~~~~g--------------  142 (368)
T TIGR00903        79 YEWLLACQLLAALGQPF-LLNAFAPAASQIREERRDLVISLLSFAMYLGIIF-ALAAGLKIYTAGG--------------  142 (368)
T ss_pred             HHHHHHHHHHHHhHhHH-HHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHccc--------------
Confidence            66888999999999886 4455556699999999999999999999999996 8999999987666              


Q ss_pred             CCcccCCCCCCcccCCcchHHHHHHHHHHHHHHHHHHHHHHhh
Q 017795          307 LPVSFRDQETPTCLGSICYSITCGIMAGLCIIAMVMSLIVVHR  349 (366)
Q Consensus       307 ~~~~~~~~~~~~c~g~~~~~~~f~i~~~~~~~~~~~~~~~~~~  349 (366)
                                        ||+.|++.+++.++..++..+..++
T Consensus       143 ------------------Wr~~f~~~~~l~~~~~~~~~~~lp~  167 (368)
T TIGR00903       143 ------------------LQLLIIPIAAVAAAGIILVLAALPA  167 (368)
T ss_pred             ------------------hHHHHHHHHHHHHHHHHHHHHHcCC
Confidence                              9999999888887776666655543

This family of proteins are uncharacterized proteins from archaea. This family includes proteins from Archaeoglobus fulgidus and Aeropyrum pernix.

>TIGR00890 2A0111 Oxalate/Formate Antiporter

Probab=99.50  E-value=5.1e-13  Score=128.37  Aligned_cols=164  Identities=14%  Similarity=0.204  Sum_probs=128.2

Q ss_pred             HHHHhhhhHHHHHhcHHHHHHHhCCChhHH--HHHHHHHHHhhhhhhhhhhhhhhhhhccCchhHHHHHHHHHHHHHHHH
Q 017795          144 SLVLASGSGLTVIDNLGQICQSLGYADTSI--YVSMISIWNFLGRVGGGYFSEAIVRKFAYPRPVAMAVAQVVMAFALLY  221 (366)
Q Consensus       144 ~~~~~~~~~~~~~~~l~~i~~~~g~~~~~~--~~sl~~i~~~~g~~~~G~lsD~~grr~~~~R~~~~~~~~~~~~~~~~l  221 (366)
                      ...+..+..+.....+|.+.+++|.+..+.  ..+.+.++..++.+.+|+++||+|||+.+      ..+.++.+++.++
T Consensus        11 ~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~s~~~~~~~~~~~~~G~l~d~~G~r~~~------~~~~~~~~~~~~~   84 (377)
T TIGR00890        11 IMCFTSGYVYTWTLLAPPLGRYFGVGVTAVAIWFTLLLIGLAMSMPVGGLLADKFGPRAVA------MLGGILYGLGFTF   84 (377)
T ss_pred             HHHHHhhHHhhhhhHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHhhhhHHHHHHcCccchh------HHhHHHHHHHHHH
Confidence            333333444556677899999999988776  88899999999999999999999998776      5666666666666


Q ss_pred             HH-hcchhHHHHHHHHHHHHhhhhhhhHHHHHHHhhCCCchhhHHHHHHhHhhhhHHHhhhhHHHHHhhhhhhhhhhhhh
Q 017795          222 YA-IGWPGEIYVTTVLVGLSYGAHWAIVPAAASELFGLKSFGALYNFLTLASPAGSLIFSGVIASGIYDYYAEKQAGLLW  300 (366)
Q Consensus       222 ~~-~~~~~~l~~~~~l~G~~~g~~~~~~~~~~se~f~~~~~g~~~g~~~~~~~~G~~i~gp~i~G~l~d~~~~~~~~~~~  300 (366)
                      .+ ..+...++++.++.|++.+..++.....+.+.++ ++++.+.++...+..+|..+ ++++.+.+.+..+        
T Consensus        85 ~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~g~~~-~~~~~~~~~~~~~--------  154 (377)
T TIGR00890        85 YAIADSLAALYLTYGLASAGVGIAYGIALNTAVKWFP-DKRGLASGIIIGGYGLGSFI-LSPLITSVINLEG--------  154 (377)
T ss_pred             HHHHHHHHHHHHHHHHHhHHHHHHHHhHHHHHHHHcC-cccHHHHHHHHHhcchhHhH-HHHHHHHHHhccc--------
Confidence            55 4455677788889999988777777777888886 67999999999999999986 5666777766555        


Q ss_pred             hccCCCCCcccCCCCCCcccCCcchHHHHHHHHHHHHHHHHHHHHHH
Q 017795          301 KYNGNMLPVSFRDQETPTCLGSICYSITCGIMAGLCIIAMVMSLIVV  347 (366)
Q Consensus       301 ~~~~~~~~~~~~~~~~~~c~g~~~~~~~f~i~~~~~~~~~~~~~~~~  347 (366)
                                              ||+.|++.++++++.++..+++.
T Consensus       155 ------------------------~~~~f~~~~~~~~~~~~~~~~~~  177 (377)
T TIGR00890       155 ------------------------VPAAFIYMGIIFLLVIVLGAFLI  177 (377)
T ss_pred             ------------------------HHHHHHHHHHHHHHHHHHHHHhe
Confidence                                    99999999988877766665554

>PRK03699 putative transporter; Provisional

Probab=99.49  E-value=2.2e-12  Score=126.62  Aligned_cols=179  Identities=16%  Similarity=0.155  Sum_probs=132.3

Q ss_pred             hhHHHHHHHHHHHhhhhHHHHHhcHHHHHH-HhCCChhHH--HHHHHHHHHhhhhhhhhhhhhhhhhhccCchhHHHHHH
Q 017795          135 KADFLLLFFSLVLASGSGLTVIDNLGQICQ-SLGYADTSI--YVSMISIWNFLGRVGGGYFSEAIVRKFAYPRPVAMAVA  211 (366)
Q Consensus       135 ~~~~~ll~~~~~~~~~~~~~~~~~l~~i~~-~~g~~~~~~--~~sl~~i~~~~g~~~~G~lsD~~grr~~~~R~~~~~~~  211 (366)
                      ++.+|++.+..++.......+..|+|.+.+ .+|++..+.  ..+.+.++..+|+++.|+++||+++|+..      ...
T Consensus       204 ~~~~~~~~~~~~~~~~~~~~~~~~~p~~l~~~~g~s~~~~~~~~~~~~~~~~ig~~~~g~l~dr~~~~~~l------~~~  277 (394)
T PRK03699        204 GIGVLFLAIAALLYILAQLTFISWVPEYAQKKFGMSLEDAGNLVSNFWMAYMVGMWIFSFIVRFFDLQRIL------TVL  277 (394)
T ss_pred             ChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCChHHhhHHHHHHHHHHHHHHHHHHHHHHHhchhhHH------HHH
Confidence            456777777777766666677889999985 479887655  77888889999999999999999887543      333


Q ss_pred             HHHHHHHHHHHH-hcchhHHHHHHHHHHHHhhhhhhhHHHHHHHhhCCCchhhHHHHHHhHhhhhHHHhhhhHHHHHhhh
Q 017795          212 QVVMAFALLYYA-IGWPGEIYVTTVLVGLSYGAHWAIVPAAASELFGLKSFGALYNFLTLASPAGSLIFSGVIASGIYDY  290 (366)
Q Consensus       212 ~~~~~~~~~l~~-~~~~~~l~~~~~l~G~~~g~~~~~~~~~~se~f~~~~~g~~~g~~~~~~~~G~~i~gp~i~G~l~d~  290 (366)
                      ..+.++..+++. ..+...+.+..++.|++.++.++...+...+..+ ++++...+.......+|+.+ +|.+.|++.|.
T Consensus       278 ~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~-~~~~~~~g~~~~~~~~g~~i-~p~~~G~l~~~  355 (394)
T PRK03699        278 AGLALVLMYLFVNTDDPSHLLYAILGLGFFSSAIYTTIITLGSQQTK-VASPKLVNFILTCGTIGTML-TFVVTSPIVAH  355 (394)
T ss_pred             HHHHHHHHHHHHHcCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHcc-CCCHHHHHHHHHhhhHHHHH-HHHHHHHHHHH
Confidence            333333333333 3344455566777888888878887777777664 55678888888889999996 99999999998


Q ss_pred             hhhhhhhhhhhccCCCCCcccCCCCCCcccCCcchHHHHHHHHHHHHHHHHHHHHHHhhcHHH
Q 017795          291 YAEKQAGLLWKYNGNMLPVSFRDQETPTCLGSICYSITCGIMAGLCIIAMVMSLIVVHRTKSV  353 (366)
Q Consensus       291 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~g~~~~~~~f~i~~~~~~~~~~~~~~~~~~~r~~  353 (366)
                      .+                                ++.++++.+++++++.++++.+.+-.|++
T Consensus       356 ~g--------------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  386 (394)
T PRK03699        356 FG--------------------------------LQAALLTANGLYAVVFVMCILLGFVSKHR  386 (394)
T ss_pred             hC--------------------------------chhhhhhhHHHHHHHHHHHHHHHHHHHHH
Confidence            77                                88899999888888776666555444443

>COG2223 NarK Nitrate/nitrite transporter [Inorganic ion transport and metabolism]

Probab=99.49  E-value=4.2e-13  Score=129.39  Aligned_cols=184  Identities=16%  Similarity=0.129  Sum_probs=139.0

Q ss_pred             HHHHhhhhHHHHHHHHHHHhhhhHHHHHhcHHHHHHH-hCCChhHH--HHHHHHHHHhhhhhhhhhhhhhhhhhccCchh
Q 017795          129 LPQALMKADFLLLFFSLVLASGSGLTVIDNLGQICQS-LGYADTSI--YVSMISIWNFLGRVGGGYFSEAIVRKFAYPRP  205 (366)
Q Consensus       129 ~~~~l~~~~~~ll~~~~~~~~~~~~~~~~~l~~i~~~-~g~~~~~~--~~sl~~i~~~~g~~~~G~lsD~~grr~~~~R~  205 (366)
                      ++...++++.|.+.+.|+...+....+..++|++.++ +|.++..+  ..++..+.+.+.|+++|++|||+|.++..   
T Consensus       211 ~~~v~~~~~~W~lsllY~~tFG~Fvgfs~~l~~~~~~~fg~~~~~Ag~~a~~f~~~g~l~Rp~GG~LsDR~Gg~rv~---  287 (417)
T COG2223         211 LKAVFSNKDTWLLSLLYFATFGGFVGFSAYLPMYLVTQFGLSPVTAGLIAFLFPLIGALARPLGGWLSDRIGGRRVT---  287 (417)
T ss_pred             HHHHhcCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChhhHHHHHHHHHHHHHHHHhccchhhhhccchhHH---
Confidence            4557789999999999999999999999999998865 89888775  88888899999999999999999886654   


Q ss_pred             HHHHHHHHHHHHHHHHHHhc--------chhHHHHHHHHHHHHhhhhhhhHHHHHHHhhCCCchhhHHHHHHhHhhhhHH
Q 017795          206 VAMAVAQVVMAFALLYYAIG--------WPGEIYVTTVLVGLSYGAHWAIVPAAASELFGLKSFGALYNFLTLASPAGSL  277 (366)
Q Consensus       206 ~~~~~~~~~~~~~~~l~~~~--------~~~~l~~~~~l~G~~~g~~~~~~~~~~se~f~~~~~g~~~g~~~~~~~~G~~  277 (366)
                         .+.+..++++..+....        +....+...+..+++.|.-....+-+++.+|+ ++.|...|+....+++|++
T Consensus       288 ---~~~f~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~l~~~~G~GnGsvfk~Ip~if~-~~~G~v~G~vga~G~lGGf  363 (417)
T COG2223         288 ---LAVFVGMALAAALLSLFLTGFGHGGSFVVFVAVFLALFVFAGLGNGSVFKMIPVIFP-KETGAVTGIVGAIGGLGGF  363 (417)
T ss_pred             ---HHHHHHHHHHHHHHHccccccccCcchHHHHHHHHHHHHHhccCcchheeechHHHH-hhhhHHHHHHHHhcccccc
Confidence               44444444444443321        11222222333344444444445556666673 4889999999999999999


Q ss_pred             HhhhhHHHHHhhhhhhhhhhhhhhccCCCCCcccCCCCCCcccCCcchHHHHHHHHHHHHHHHHHHHHHHhhcH
Q 017795          278 IFSGVIASGIYDYYAEKQAGLLWKYNGNMLPVSFRDQETPTCLGSICYSITCGIMAGLCIIAMVMSLIVVHRTK  351 (366)
Q Consensus       278 i~gp~i~G~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~g~~~~~~~f~i~~~~~~~~~~~~~~~~~~~r  351 (366)
                      . =|...|..+|.++                               +|...|++...+.+++.+.....+.|.|
T Consensus       364 ~-lp~~~g~~~~~tg-------------------------------~~~~~f~~~~~~~~~a~v~~~~~y~r~~  405 (417)
T COG2223         364 F-LPLAFGVSLDLTG-------------------------------SYTGAFMLLLAFYLVALVLTWALYARRR  405 (417)
T ss_pred             c-hhHHHHHHHHhcc-------------------------------cHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence            6 5999999999998                               4999999999999988888777766654

>TIGR00924 yjdL_sub1_fam amino acid/peptide transporter (Peptide:H+ symporter), bacterial

Probab=99.49  E-value=9.4e-13  Score=132.86  Aligned_cols=168  Identities=17%  Similarity=0.232  Sum_probs=136.3

Q ss_pred             HHHHHHHHHHHhhhhHHHHHhcHHHHHHH---hCCChhHH--HHHHHHHHHhhhhhhhhhhhhh-hhhhccCchhHHHHH
Q 017795          137 DFLLLFFSLVLASGSGLTVIDNLGQICQS---LGYADTSI--YVSMISIWNFLGRVGGGYFSEA-IVRKFAYPRPVAMAV  210 (366)
Q Consensus       137 ~~~ll~~~~~~~~~~~~~~~~~l~~i~~~---~g~~~~~~--~~sl~~i~~~~g~~~~G~lsD~-~grr~~~~R~~~~~~  210 (366)
                      .+|.+++..++...+.+....++|.+.++   +|++..++  ..+.+.+...++++++|+++|| +|||+..      ..
T Consensus        11 ~~~~l~~~~~~~~~~~~~~~~~L~~yl~~~~~lg~s~~~ag~~~~~~~~~~~~~~~~~G~laDr~~G~~~~l------~~   84 (475)
T TIGR00924        11 PLFTLFFVELWERFSYYGMQGILAVYLVQQAGLGFSQEQAFIIFGAYSALVYLLTSVGWWFGDRVWGTKKTM------VL   84 (475)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHHHHHHhhHHHHHHhhcchHHHH------HH
Confidence            35667777777667777778889988765   78887665  7888889999999999999999 7998766      67


Q ss_pred             HHHHHHHHHHHHHhc-chhHHHHHHHHHHHHhhhhhhhHHHHHHHhhCCCc---hhhHHHHHHhHhhhhHHHhhhhHHHH
Q 017795          211 AQVVMAFALLYYAIG-WPGEIYVTTVLVGLSYGAHWAIVPAAASELFGLKS---FGALYNFLTLASPAGSLIFSGVIASG  286 (366)
Q Consensus       211 ~~~~~~~~~~l~~~~-~~~~l~~~~~l~G~~~g~~~~~~~~~~se~f~~~~---~g~~~g~~~~~~~~G~~i~gp~i~G~  286 (366)
                      +.++.++++++++.. +...++++.++.|+|.|...+...+++++.++.++   ++.++++.+.+.++|+.+ ||.++|+
T Consensus        85 ~~~~~~~g~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~a~~~~~~~~~~r~~~~~~~~~~~niG~~i-g~~l~g~  163 (475)
T TIGR00924        85 GGIVLMLGHFMLAMSIYPDLIFYGLGTIAVGSGLFKANPSSMVGKLYERGDMPRRDGGFTLFYMSINIGSFI-SPLLAGV  163 (475)
T ss_pred             HHHHHHHHHHHHHhcccHhHHHHHHHHHHhccccccCCHHHHHHHhcCCCCcccccceehhHHHHHHHHHHH-HHHHHHH
Confidence            777777787776643 44566677888899998888899999999998764   888999999999999996 9999999


Q ss_pred             HhhhhhhhhhhhhhhccCCCCCcccCCCCCCcccCCcchHHHHHHHHHHHHHHHHHH
Q 017795          287 IYDYYAEKQAGLLWKYNGNMLPVSFRDQETPTCLGSICYSITCGIMAGLCIIAMVMS  343 (366)
Q Consensus       287 l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~g~~~~~~~f~i~~~~~~~~~~~~  343 (366)
                      +.+..+                                |++.|++.++.++++.+..
T Consensus       164 l~~~~g--------------------------------~~~~f~~~~~~~~~~~l~~  188 (475)
T TIGR00924       164 IAENYG--------------------------------YHVGFNLAAVGMVIGLLTF  188 (475)
T ss_pred             HHHhcC--------------------------------hHHHHHHHHHHHHHHHHHH
Confidence            998776                                9999998886665554433

The model describes proton-dependent oligopeptide transporters in bacteria. This model is restricted in its range in recognizing bacterial proton-dependent oligopeptide transporters, although they are found in yeast, plants and animals. They function by proton symport in a 1:1 stoichiometry, which is variable in different species. All of them are predicted to contain 12 transmembrane domains, for which limited experimental evidence exists.

>cd06174 MFS The Major Facilitator Superfamily (MFS) is a large and diverse group of secondary transporters that includes uniporters, symporters, and antiporters

Probab=99.49  E-value=1.9e-12  Score=122.91  Aligned_cols=169  Identities=22%  Similarity=0.284  Sum_probs=138.0

Q ss_pred             HHHHHHHHHhhhhHHHHHhcHHHHHHHhCCChhHH--HHHHHHHHHhhhhhhhhhhhhhhhhhccCchhHHHHHHHHHHH
Q 017795          139 LLLFFSLVLASGSGLTVIDNLGQICQSLGYADTSI--YVSMISIWNFLGRVGGGYFSEAIVRKFAYPRPVAMAVAQVVMA  216 (366)
Q Consensus       139 ~ll~~~~~~~~~~~~~~~~~l~~i~~~~g~~~~~~--~~sl~~i~~~~g~~~~G~lsD~~grr~~~~R~~~~~~~~~~~~  216 (366)
                      +.+.+..++...........+|.+.+++|.+..+.  ..+...++..++.+++|+++||+|||+..      ..+.++..
T Consensus         2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~d~~g~r~~~------~~~~~~~~   75 (352)
T cd06174           2 LLLFLGFFLSGLDRGLLSPALPLLAEDLGLSASQAGLIVSAFSLGYALGSLLAGYLSDRFGRRRVL------LLGLLLFA   75 (352)
T ss_pred             HHHHHHHHHHHHhhhhhHhhHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHhHHHHHHHhCCchhh------HHHHHHHH
Confidence            34445555555566667777888999999887765  78888899999999999999999998755      66666666


Q ss_pred             HHHHHHH-hcchhHHHHHHHHHHHHhhhhhhhHHHHHHHhhCCCchhhHHHHHHhHhhhhHHHhhhhHHHHHhhhhhhhh
Q 017795          217 FALLYYA-IGWPGEIYVTTVLVGLSYGAHWAIVPAAASELFGLKSFGALYNFLTLASPAGSLIFSGVIASGIYDYYAEKQ  295 (366)
Q Consensus       217 ~~~~l~~-~~~~~~l~~~~~l~G~~~g~~~~~~~~~~se~f~~~~~g~~~g~~~~~~~~G~~i~gp~i~G~l~d~~~~~~  295 (366)
                      ++.++.. ..+...+++..++.|++.+..++...+++.|.+++++|++..++......+|..+ +|.+++.+.+..+   
T Consensus        76 ~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~-~~~~~~~~~~~~~---  151 (352)
T cd06174          76 LGSLLLAFASSLWLLLVGRFLLGLGGGALYPAAAALIAEWFPPKERGRALGLFSAGFGLGALL-GPLLGGLLAESLG---  151 (352)
T ss_pred             HHHHHHHHhccHHHHHHHHHHHHcccccccHhHHHHHHHhCCccchhhhhhHHHHHHHHHHHH-HHHHHHHHHHHhh---
Confidence            6666655 3456677888999999999989999999999999999999999999999999996 9999999998776   


Q ss_pred             hhhhhhccCCCCCcccCCCCCCcccCCcchHHHHHHHHHHHHHHHHHHHHH
Q 017795          296 AGLLWKYNGNMLPVSFRDQETPTCLGSICYSITCGIMAGLCIIAMVMSLIV  346 (366)
Q Consensus       296 ~~~~~~~~~~~~~~~~~~~~~~~c~g~~~~~~~f~i~~~~~~~~~~~~~~~  346 (366)
                                                   |++.|++.+++.+++.+....+
T Consensus       152 -----------------------------~~~~~~~~~~~~~~~~~~~~~~  173 (352)
T cd06174         152 -----------------------------WRWLFLILAILGLLLALLLLFL  173 (352)
T ss_pred             -----------------------------HHHHHHHHHHHHHHHHHHHHHH
Confidence                                         9999998888777766655443

MFS proteins facilitate the transport across cytoplasmic or internal membranes of a variety of substrates including ions, sugar phosphates, drugs, neurotransmitters, nucleosides, amino acids, and peptides. They do so using the electrochemical potential of the transported substrates. Uniporters transport a single substrate, while symporters and antiporters transport two substrates in the same or in opposite directions, respectively, across membranes. MFS proteins are typically 400 to 600 amino acids in length, and the majority contain 12 transmembrane alpha helices (TMs) connected by hydrophilic loops. The N- and C-terminal halves of these proteins display weak similarity and may be the result of a gene duplication/fusion event. Based on kinetic studies and the structures of a few bacterial superfamily members, GlpT (glycerol-3

>PRK03699 putative transporter; Provisional

Probab=99.48  E-value=2.2e-12  Score=126.59  Aligned_cols=169  Identities=12%  Similarity=0.090  Sum_probs=132.5

Q ss_pred             hHHHHHHHHHHHhhhhHHHHHhcHHHHHHHhCCChhHH--HHHHHHHHHhhhhhhhhhhhhhhhhhccCchhHHHHHHHH
Q 017795          136 ADFLLLFFSLVLASGSGLTVIDNLGQICQSLGYADTSI--YVSMISIWNFLGRVGGGYFSEAIVRKFAYPRPVAMAVAQV  213 (366)
Q Consensus       136 ~~~~ll~~~~~~~~~~~~~~~~~l~~i~~~~g~~~~~~--~~sl~~i~~~~g~~~~G~lsD~~grr~~~~R~~~~~~~~~  213 (366)
                      +.+|..++.+++.......+...+|++.+++|++..+.  ..+...++..++.+++|+++||+|||+..      ..+.+
T Consensus         7 ~~~~~~~~~~~~~~~~~~~~g~~~~~i~~~~~~s~~~~g~~~s~~~~~~~i~~~~~g~l~dr~g~r~~~------~~~~~   80 (394)
T PRK03699          7 KLTWISFLSYALTGALVIVTGMVMGPIAEYFNLPVSSMSNTFTFLNAGILISIFLNAWLMEIIPLKRQL------IFGFA   80 (394)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhhhhHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHH------HHHHH
Confidence            34666666666666666667778999999999988765  77788889999999999999999998654      55555


Q ss_pred             HHHHHHHHHH-hcchhHHHHHHHHHHHHhhhhhhhHHHHHHHhhCCCchhhHHHHHHhHhhhhHHHhhhhHHHHHhhhhh
Q 017795          214 VMAFALLYYA-IGWPGEIYVTTVLVGLSYGAHWAIVPAAASELFGLKSFGALYNFLTLASPAGSLIFSGVIASGIYDYYA  292 (366)
Q Consensus       214 ~~~~~~~l~~-~~~~~~l~~~~~l~G~~~g~~~~~~~~~~se~f~~~~~g~~~g~~~~~~~~G~~i~gp~i~G~l~d~~~  292 (366)
                      +.+++.++.. ..+...+++..++.|++.|...+...+.+.|.++.++++...+..+....+|+.+ +|.+.+++.+...
T Consensus        81 ~~~i~~~l~~~~~~~~~~~~~~~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~-~~~~~~~l~~~~~  159 (394)
T PRK03699         81 LMILAVAGLMFSHSLALFSIAMFVLGVVSGITMSIGTFLITHVYEGKQRGSRLLFTDSFFSMAGMI-FPIIAAYLLARSI  159 (394)
T ss_pred             HHHHHHHHHHHcchHHHHHHHHHHHHHhhHhhccchhHHhhhhcccchHHHHHHHHHHHHHHHHHH-HHHHHHHHHhccc
Confidence            6666655555 3455567788899999988888888889999999899999999988888899886 8999888875432


Q ss_pred             hhhhhhhhhccCCCCCcccCCCCCCcccCCcchHHHHHHHHHHHHHHHHH
Q 017795          293 EKQAGLLWKYNGNMLPVSFRDQETPTCLGSICYSITCGIMAGLCIIAMVM  342 (366)
Q Consensus       293 ~~~~~~~~~~~~~~~~~~~~~~~~~~c~g~~~~~~~f~i~~~~~~~~~~~  342 (366)
                                                     +||+.|++.+++.++..++
T Consensus       160 -------------------------------gw~~~f~~~~~~~~~~~~~  178 (394)
T PRK03699        160 -------------------------------EWYWVYACIGLVYVAIFIL  178 (394)
T ss_pred             -------------------------------cHHHHHHHHHHHHHHHHHH
Confidence                                           2999999888776665443

>PRK15402 multidrug efflux system translocase MdfA; Provisional

Probab=99.48  E-value=1.8e-12  Score=127.60  Aligned_cols=159  Identities=9%  Similarity=0.029  Sum_probs=125.6

Q ss_pred             hHHHHHhcHHHHHHHhCCChhHH--HHHHHHHHHhhhhhhhhhhhhhhhhhccCchhHHHHHHHHHHHHHHHHHH-hcch
Q 017795          151 SGLTVIDNLGQICQSLGYADTSI--YVSMISIWNFLGRVGGGYFSEAIVRKFAYPRPVAMAVAQVVMAFALLYYA-IGWP  227 (366)
Q Consensus       151 ~~~~~~~~l~~i~~~~g~~~~~~--~~sl~~i~~~~g~~~~G~lsD~~grr~~~~R~~~~~~~~~~~~~~~~l~~-~~~~  227 (366)
                      ....+...+|++.+++|.+....  ..+.+.++..++.++.|+++||+|||+.+      ..+.++.+++.++.. ..+.
T Consensus        28 ~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~G~l~dr~g~r~~l------~~~~~~~~~~~~~~~~~~~~  101 (406)
T PRK15402         28 ANDMIQPGMLAVVEDFNAGAEWVPTSMTAYLAGGMFLQWLLGPLSDRIGRRPVM------LAGVAFFILTCLAILLAQSI  101 (406)
T ss_pred             hhhhHhcchHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCChHHH------HHHHHHHHHHHHHHHHHccH
Confidence            34455667888999999987765  77888889999999999999999997654      555555555555544 4455


Q ss_pred             hHHHHHHHHHHHHhhhhhhhHHHHHHHhhCCCchhhHHHHHHhHhhhhHHHhhhhHHHHHhhhhhhhhhhhhhhccCCCC
Q 017795          228 GEIYVTTVLVGLSYGAHWAIVPAAASELFGLKSFGALYNFLTLASPAGSLIFSGVIASGIYDYYAEKQAGLLWKYNGNML  307 (366)
Q Consensus       228 ~~l~~~~~l~G~~~g~~~~~~~~~~se~f~~~~~g~~~g~~~~~~~~G~~i~gp~i~G~l~d~~~~~~~~~~~~~~~~~~  307 (366)
                      ..+++..++.|++.+...+...+.+.|.+++++++...++......+|..+ ||.+++.+.+..+               
T Consensus       102 ~~l~~~~~l~G~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~-g~~i~~~l~~~~~---------------  165 (406)
T PRK15402        102 EQFTLLRFLQGIGLCFIGAVGYAAIQESFEEADAIKITALMANVALLAPLL-GPLVGAALIHVLP---------------  165 (406)
T ss_pred             HHHHHHHHHHHhHhhhHHHHHHHHHHHHhChhHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHccC---------------
Confidence            667788889999988877888889999999999999889888888888885 9999999988666               


Q ss_pred             CcccCCCCCCcccCCcchHHHHHHHHHHHHHHHHHHHHHHh
Q 017795          308 PVSFRDQETPTCLGSICYSITCGIMAGLCIIAMVMSLIVVH  348 (366)
Q Consensus       308 ~~~~~~~~~~~c~g~~~~~~~f~i~~~~~~~~~~~~~~~~~  348 (366)
                                       |++.|++.+++++++.+......+
T Consensus       166 -----------------w~~~~~~~~~~~~~~~~~~~~~~~  189 (406)
T PRK15402        166 -----------------WRGMFVLFAALAALSFFGLWRAMP  189 (406)
T ss_pred             -----------------ccHHHHHHHHHHHHHHHHHHHhCC
Confidence                             999999988888776665544433

>TIGR00895 2A0115 benzoate transport

Probab=99.48  E-value=8.1e-13  Score=128.05  Aligned_cols=167  Identities=14%  Similarity=0.111  Sum_probs=129.9

Q ss_pred             HHHHhhhhHHHHHhcHHHHHHHhCCChhHH--HHHHHHHHHhhhhhhhhhhhhhhhhhccCchhHHHHHHHHHHHHHHHH
Q 017795          144 SLVLASGSGLTVIDNLGQICQSLGYADTSI--YVSMISIWNFLGRVGGGYFSEAIVRKFAYPRPVAMAVAQVVMAFALLY  221 (366)
Q Consensus       144 ~~~~~~~~~~~~~~~l~~i~~~~g~~~~~~--~~sl~~i~~~~g~~~~G~lsD~~grr~~~~R~~~~~~~~~~~~~~~~l  221 (366)
                      .+++...........+|.+.+++|++....  ..++..++..++.++.|+++||+|||+..      ..+.++.+++.++
T Consensus        25 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~------~~~~~~~~~~~~~   98 (398)
T TIGR00895        25 IMLMDGYDLAAMGFAAPAISAEWGLDPVQLGFLFSAGLIGMAFGALFFGPLADRIGRKRVL------LWSILLFSVFTLL   98 (398)
T ss_pred             HHHHHHHHHHHHHhhHHHHhhccCCCHHHHHHHHHHHHHHHHHHHHHhHHHHHHhhhHHHH------HHHHHHHHHHHHH
Confidence            333333334455667888899999987665  67778888899999999999999987654      5555555555555


Q ss_pred             HH-hcchhHHHHHHHHHHHHhhhhhhhHHHHHHHhhCCCchhhHHHHHHhHhhhhHHHhhhhHHHHHhhhhhhhhhhhhh
Q 017795          222 YA-IGWPGEIYVTTVLVGLSYGAHWAIVPAAASELFGLKSFGALYNFLTLASPAGSLIFSGVIASGIYDYYAEKQAGLLW  300 (366)
Q Consensus       222 ~~-~~~~~~l~~~~~l~G~~~g~~~~~~~~~~se~f~~~~~g~~~g~~~~~~~~G~~i~gp~i~G~l~d~~~~~~~~~~~  300 (366)
                      .. ..+...+++..++.|++.+..++...++++|.++.++++.+.++......+|..+ +|.++|++.+..+        
T Consensus        99 ~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~-~~~~~~~l~~~~g--------  169 (398)
T TIGR00895        99 CALATNVTQLLILRFLAGLGLGGLMPNLNALVSEYAPKRFRGTAVGLMFCGYPIGAAV-GGFLAGWLIPVFG--------  169 (398)
T ss_pred             HHHccchHHHHHHHHHHhcccccchhhHHHHHHHHcCHHhhchhHhhHhhHHHHHHHH-HHHHHHHHhhccc--------
Confidence            44 3455567788889999999989999999999999999999999999999999996 9999999988776        


Q ss_pred             hccCCCCCcccCCCCCCcccCCcchHHHHHHHHHHHHHHHHHHHHHHhh
Q 017795          301 KYNGNMLPVSFRDQETPTCLGSICYSITCGIMAGLCIIAMVMSLIVVHR  349 (366)
Q Consensus       301 ~~~~~~~~~~~~~~~~~~c~g~~~~~~~f~i~~~~~~~~~~~~~~~~~~  349 (366)
                                              |++.|++.++++.+..++...+.++
T Consensus       170 ------------------------~~~~~~~~~~~~~~~~~~~~~~~~~  194 (398)
T TIGR00895       170 ------------------------WRSLFYVGGIAPLLLLLLLMRFLPE  194 (398)
T ss_pred             ------------------------ceeehhhhhhHHHHHHHHHHHhCCC
Confidence                                    9999988876666655555554443

>PRK11652 emrD multidrug resistance protein D; Provisional

Probab=99.48  E-value=1.8e-12  Score=126.89  Aligned_cols=172  Identities=9%  Similarity=0.102  Sum_probs=132.6

Q ss_pred             HHHHHHHHHhhhhHHHHHhcHHHHHHHhCCChhHH--HHHHHHHHHhhhhhhhhhhhhhhhhhccCchhHHHHHHHHHHH
Q 017795          139 LLLFFSLVLASGSGLTVIDNLGQICQSLGYADTSI--YVSMISIWNFLGRVGGGYFSEAIVRKFAYPRPVAMAVAQVVMA  216 (366)
Q Consensus       139 ~ll~~~~~~~~~~~~~~~~~l~~i~~~~g~~~~~~--~~sl~~i~~~~g~~~~G~lsD~~grr~~~~R~~~~~~~~~~~~  216 (366)
                      ++.....++.......+...+|++.+++|.+....  ..+...++..++.+++|+++||+|||+.+      ..+.++.+
T Consensus        11 ~~~~~~~~~~~~~~~~~~p~~~~i~~~~~~s~~~~~~~~~~~~~~~~~~~~~~G~l~Dr~grr~~~------~~~~~~~~   84 (394)
T PRK11652         11 FMLVLLVAVGQMAQTIYVPAIADMARDLNVREGAVQAVMAAYLLTYGLSQLFYGPLSDRVGRRPVI------LVGMSIFI   84 (394)
T ss_pred             HHHHHHHHHHHHHHHHHhccHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHhhhhHHHhcCChHHH------HHHHHHHH
Confidence            44445555555555666778999999999988766  77888899999999999999999997654      45555555


Q ss_pred             HHHHHHH-hcchhHHHHHHHHHHHHhhhhhhhHHHHHHHhhCCCchhhHHHHHHhHhhhhHHHhhhhHHHHHhhhhhhhh
Q 017795          217 FALLYYA-IGWPGEIYVTTVLVGLSYGAHWAIVPAAASELFGLKSFGALYNFLTLASPAGSLIFSGVIASGIYDYYAEKQ  295 (366)
Q Consensus       217 ~~~~l~~-~~~~~~l~~~~~l~G~~~g~~~~~~~~~~se~f~~~~~g~~~g~~~~~~~~G~~i~gp~i~G~l~d~~~~~~  295 (366)
                      ++.++.. ..+...+++.+++.|++.+...+.......|.++.++++.+.+..+++..++..+ +|.++|.+.+..+   
T Consensus        85 ~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-g~~i~~~l~~~~g---  160 (394)
T PRK11652         85 LGTLVALFAHSLTVLIAASAIQGLGTGVGGVMARTLPRDLYEGTQLRHANSLLNMGILVSPLL-APLIGGLLTTLFG---  160 (394)
T ss_pred             HHHHHHHHHccHHHHHHHHHHHHhhhhHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHhccC---
Confidence            5555544 3455667788889999888777777778899999899999999999999999986 9999999988766   


Q ss_pred             hhhhhhccCCCCCcccCCCCCCcccCCcchHHHHHHHHHHHHHHHHHHHHHHhh
Q 017795          296 AGLLWKYNGNMLPVSFRDQETPTCLGSICYSITCGIMAGLCIIAMVMSLIVVHR  349 (366)
Q Consensus       296 ~~~~~~~~~~~~~~~~~~~~~~~c~g~~~~~~~f~i~~~~~~~~~~~~~~~~~~  349 (366)
                                                   |++.|++.+++.++..++..++.++
T Consensus       161 -----------------------------~~~~f~~~~~~~~~~~~~~~~~~~~  185 (394)
T PRK11652        161 -----------------------------WRACYLFLLLLGAGVTFSMARWMPE  185 (394)
T ss_pred             -----------------------------hHHHHHHHHHHHHHHHHHHHHhCCc
Confidence                                         9999998887766555544444333

>PRK12307 putative sialic acid transporter; Provisional

Probab=99.48  E-value=2.7e-12  Score=126.79  Aligned_cols=148  Identities=14%  Similarity=0.104  Sum_probs=119.3

Q ss_pred             HHHHHHHHHHhhhhHHHHHhcHHHHHHHhCCChhHH--HHHHHHHHHhhhhhhhhhhhhhhhhhccCchhHHHHHHHHHH
Q 017795          138 FLLLFFSLVLASGSGLTVIDNLGQICQSLGYADTSI--YVSMISIWNFLGRVGGGYFSEAIVRKFAYPRPVAMAVAQVVM  215 (366)
Q Consensus       138 ~~ll~~~~~~~~~~~~~~~~~l~~i~~~~g~~~~~~--~~sl~~i~~~~g~~~~G~lsD~~grr~~~~R~~~~~~~~~~~  215 (366)
                      +...++.+++...........+|.+.+++|.+..+.  ..++..++..++.++.|+++||+|||+..      ..+.++.
T Consensus        20 ~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~~~~~~~~~~~~~~~l~~~~~g~l~dr~g~r~~l------~~~~~~~   93 (426)
T PRK12307         20 LFSAWLGYVFDGFDFMLIFYIMYLIKADLGLTDMEGAFLATAAFIGRPFGGALFGLLADKFGRKPLM------MWSIVAY   93 (426)
T ss_pred             HHHHHHHHHHHHhHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCChHHH------HHHHHHH
Confidence            444455555544555556667788889999987765  77888899999999999999999998765      6666666


Q ss_pred             HHHHHHHH-hcchhHHHHHHHHHHHHhhhhhhhHHHHHHHhhCCCchhhHHHHHHhHhhhhHHHhhhhHHHHHhhhhh
Q 017795          216 AFALLYYA-IGWPGEIYVTTVLVGLSYGAHWAIVPAAASELFGLKSFGALYNFLTLASPAGSLIFSGVIASGIYDYYA  292 (366)
Q Consensus       216 ~~~~~l~~-~~~~~~l~~~~~l~G~~~g~~~~~~~~~~se~f~~~~~g~~~g~~~~~~~~G~~i~gp~i~G~l~d~~~  292 (366)
                      +++.++.. ..+...+++++++.|++.+..++....++.|.+++++|+.+.++...+..+|..+ +|.+.+.+.+..+
T Consensus        94 ~~~~~~~~~~~~~~~l~~~r~l~G~g~g~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~lg~~~-~~~l~~~l~~~~~  170 (426)
T PRK12307         94 SVGTGLSGLASGVIMLTLSRFIVGMGMAGEYACASTYAVESWPKHLKSKASAFLVSGFGIGNII-AAYFMPSFAEAYG  170 (426)
T ss_pred             HHHHHHHHHHhHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhCCHhHhhHhhhHHHHHHhHHHHH-HHHHHHHHcccCC
Confidence            66666655 4456678889999999999988999999999999999999999999999999996 8888888877666

>TIGR00889 2A0110 nucleoside transporter

Probab=99.48  E-value=1.1e-12  Score=130.20  Aligned_cols=189  Identities=12%  Similarity=0.115  Sum_probs=138.6

Q ss_pred             HHHHhhhhHHHHHHHHHHHhhhhHHHHHhcHHHHHHHhCCCh--------h--HHHHHHHHHHHhhhhhhhhhhhhhhhh
Q 017795          129 LPQALMKADFLLLFFSLVLASGSGLTVIDNLGQICQSLGYAD--------T--SIYVSMISIWNFLGRVGGGYFSEAIVR  198 (366)
Q Consensus       129 ~~~~l~~~~~~ll~~~~~~~~~~~~~~~~~l~~i~~~~g~~~--------~--~~~~sl~~i~~~~g~~~~G~lsD~~gr  198 (366)
                      ..+.+|++.+|.+++..++..........+++.+.++.|++.        +  ....++..+...++.+..|+++||+|+
T Consensus       201 ~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~g~~~~~~~i~~i~~~~~~g~l~dr~g~  280 (418)
T TIGR00889       201 AFILFKNKRMAIFFFFSMLLGAPLQITNIFGNGFLHEFGRNPEFADSFVVKNASIWMSLSQFSEIFFILTIPFFLKRFGI  280 (418)
T ss_pred             HHHHhcCCCeeeHHHHHHHHHhHHHHHHHhHHHHHHHhcccccccchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhCc
Confidence            345778888887777666654444445556677777777553        1  226777778888999999999999998


Q ss_pred             hccCchhHHHHHHHHHHHHHHHHHHhc--ch---hHHHHHHHHHHHHhhhhhhhHHHHHHHhhCCCchhhHHHHHH-hHh
Q 017795          199 KFAYPRPVAMAVAQVVMAFALLYYAIG--WP---GEIYVTTVLVGLSYGAHWAIVPAAASELFGLKSFGALYNFLT-LAS  272 (366)
Q Consensus       199 r~~~~R~~~~~~~~~~~~~~~~l~~~~--~~---~~l~~~~~l~G~~~g~~~~~~~~~~se~f~~~~~g~~~g~~~-~~~  272 (366)
                      |+.+      ..+.++.+++..++...  +.   ..+++..++.|++.+...+.....++|.+|++.+|+++|+.+ ...
T Consensus       281 r~~l------~~~~~~~~v~~~l~~~~~~~~~~~~~l~l~~~l~g~~~~~~~~~~~~~i~~~~p~~~~g~~~g~~~~~~~  354 (418)
T TIGR00889       281 KKVM------LLSLVAWALRFGFFAYGDPEYFGYALLFLSMIVYGCAFDFFNISGSVFVEKEVPVHIRASAQGLFTLMCN  354 (418)
T ss_pred             HHHH------HHHHHHHHHHHHHHHHcCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHH
Confidence            7655      55666666655444431  11   234566778888888777777888999999999999999997 567


Q ss_pred             hhhHHHhhhhHHHHHhhhhhhhhhhhhhhccCCCCCcccCCCCCCcccCCcchHHHHHHHHHHHHHHHHHHHHHHhhc
Q 017795          273 PAGSLIFSGVIASGIYDYYAEKQAGLLWKYNGNMLPVSFRDQETPTCLGSICYSITCGIMAGLCIIAMVMSLIVVHRT  350 (366)
Q Consensus       273 ~~G~~i~gp~i~G~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~g~~~~~~~f~i~~~~~~~~~~~~~~~~~~~  350 (366)
                      .+|+.+ ||.++|+++|..+....                          .+|+.+|++.++++++++++..++.++.
T Consensus       355 ~lg~~i-Gp~l~G~l~~~~g~~~~--------------------------~~~~~~f~~~~~~~~i~~~l~~~~~~~~  405 (418)
T TIGR00889       355 GFGSLL-GYILSGVMVEKMFAYGT--------------------------FDWQTMWLFFAGYIAILAVLFMIFFKYS  405 (418)
T ss_pred             hhHHHH-HHHHHHHHHHHhccccC--------------------------CchHHHHHHHHHHHHHHHHHHHHHhCCc
Confidence            899996 99999999998652110                          1399999999988888887777776554

This family of proteins transports nucleosides at a high affinity. The transport mechanism is driven by proton motive force. This family includes nucleoside permease NupG and xanthosine permease from E.Coli.

>PRK05122 major facilitator superfamily transporter; Provisional

Probab=99.48  E-value=3.6e-12  Score=124.98  Aligned_cols=156  Identities=12%  Similarity=0.124  Sum_probs=118.9

Q ss_pred             HHHHhcHHHHHHHhCCChhHHHHHHHHHHHhhhhhhhhhhhhhhhhhccCchhHHHHHHHHHHHHHHHHHH-hcchhHHH
Q 017795          153 LTVIDNLGQICQSLGYADTSIYVSMISIWNFLGRVGGGYFSEAIVRKFAYPRPVAMAVAQVVMAFALLYYA-IGWPGEIY  231 (366)
Q Consensus       153 ~~~~~~l~~i~~~~g~~~~~~~~sl~~i~~~~g~~~~G~lsD~~grr~~~~R~~~~~~~~~~~~~~~~l~~-~~~~~~l~  231 (366)
                      .....+++.+.++.|++......+.+.++..++++..|+++||+++|+..      ..+..+++++.+++. ..+...++
T Consensus       233 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~~r~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~  306 (399)
T PRK05122        233 GTIATFITLYYAARGWDGAALALTLFGVAFVGARLLFGNLINRLGGLRVA------IVSLLVEILGLLLLWLAPSPWMAL  306 (399)
T ss_pred             HHHHHHHHHHHHHcccccchHHHHHHHHHHHHHHHHHHHHHHHhccHHHH------HHHHHHHHHHHHHHHHhccHHHHH
Confidence            34455677777777775444466778888899999999999999876543      445555555555544 33445566


Q ss_pred             HHHHHHHHHhhhhhhhHHHHHHHhhCCCchhhHHHHHHhHhhhhHHHhhhhHHHHHhhhhhhhhhhhhhhccCCCCCccc
Q 017795          232 VTTVLVGLSYGAHWAIVPAAASELFGLKSFGALYNFLTLASPAGSLIFSGVIASGIYDYYAEKQAGLLWKYNGNMLPVSF  311 (366)
Q Consensus       232 ~~~~l~G~~~g~~~~~~~~~~se~f~~~~~g~~~g~~~~~~~~G~~i~gp~i~G~l~d~~~~~~~~~~~~~~~~~~~~~~  311 (366)
                      +..++.|++.+..++.....+.|.++++++|+++++.+....+|..+ +|.+.|++.|..+                   
T Consensus       307 ~~~~l~G~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~-~~~~~g~l~~~~g-------------------  366 (399)
T PRK05122        307 IGAALTGFGFSLVFPALGVEAVKRVPPQNRGAALGAYSVFLDLSLGI-TGPLAGLVASWFG-------------------  366 (399)
T ss_pred             HHHHHHHHhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHcC-------------------
Confidence            67788899988877777777889999999999999999999999986 8999999998776                   


Q ss_pred             CCCCCCcccCCcchHHHHHHHHHHHHHHHHHHHHHH
Q 017795          312 RDQETPTCLGSICYSITCGIMAGLCIIAMVMSLIVV  347 (366)
Q Consensus       312 ~~~~~~~c~g~~~~~~~f~i~~~~~~~~~~~~~~~~  347 (366)
                                   |++.|++.+++++++.++...+.
T Consensus       367 -------------~~~~~~~~~~~~~~~~~~~~~~~  389 (399)
T PRK05122        367 -------------YPSIFLAAALAALLGLALTWLLY  389 (399)
T ss_pred             -------------HHHHHHHHHHHHHHHHHHHHHhc
Confidence                         99999998888887766655443

>TIGR00891 2A0112 putative sialic acid transporter

Probab=99.47  E-value=3.4e-12  Score=124.27  Aligned_cols=148  Identities=13%  Similarity=0.193  Sum_probs=120.5

Q ss_pred             HHHHHHHHHHhhhhHHHHHhcHHHHHHHhCCChhHH--HHHHHHHHHhhhhhhhhhhhhhhhhhccCchhHHHHHHHHHH
Q 017795          138 FLLLFFSLVLASGSGLTVIDNLGQICQSLGYADTSI--YVSMISIWNFLGRVGGGYFSEAIVRKFAYPRPVAMAVAQVVM  215 (366)
Q Consensus       138 ~~ll~~~~~~~~~~~~~~~~~l~~i~~~~g~~~~~~--~~sl~~i~~~~g~~~~G~lsD~~grr~~~~R~~~~~~~~~~~  215 (366)
                      +...++.+++............|++.+++|++..+.  ..++..++..++.++.|+++||+|||+.+      ..+.++.
T Consensus        14 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~s~~~~g~~~~~~~~~~~~~~~~~G~l~Dr~g~r~~~------~~~~~~~   87 (405)
T TIGR00891        14 FSAAWLGWLLDAFDFFLVALVLAEVAGEFGLTTVDAASLISAALISRWFGALMFGLWGDRYGRRLPM------VTSIVLF   87 (405)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHH------HHHHHHH
Confidence            445556666666666667777889999999987766  78888899999999999999999998655      5555666


Q ss_pred             HHHHHHHH-hcchhHHHHHHHHHHHHhhhhhhhHHHHHHHhhCCCchhhHHHHHHhHhhhhHHHhhhhHHHHHhhhhh
Q 017795          216 AFALLYYA-IGWPGEIYVTTVLVGLSYGAHWAIVPAAASELFGLKSFGALYNFLTLASPAGSLIFSGVIASGIYDYYA  292 (366)
Q Consensus       216 ~~~~~l~~-~~~~~~l~~~~~l~G~~~g~~~~~~~~~~se~f~~~~~g~~~g~~~~~~~~G~~i~gp~i~G~l~d~~~  292 (366)
                      +++.++.. ..+...+++..++.|++.+..++...+++.|.+++++++.+.++.+....+|..+ +|.+++.+.+..+
T Consensus        88 ~~~~~~~~~~~~~~~l~~~~~l~G~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~g~~~-~~~l~~~l~~~~~  164 (405)
T TIGR00891        88 SAGTLACGFAPGYITMFIARLVIGIGMGGEYGSSAAYVIESWPKHLRNKASGLLISGYAVGAVV-AAQVYSLVVPVWG  164 (405)
T ss_pred             HHHHHHHHHhccHHHHHHHHHHHHhhhhhhhHHHHHHHHHhCChhhhhHHHHHHHHHHHHHHHH-HHHHHHHHHHhcC
Confidence            66655554 4456677888999999999989999999999999999999999999999999996 8999998877554

>TIGR00894 2A0114euk Na(+)-dependent inorganic phosphate cotransporter

Probab=99.47  E-value=2.3e-12  Score=129.19  Aligned_cols=193  Identities=13%  Similarity=0.083  Sum_probs=132.9

Q ss_pred             CCHHHHhhhhHHHHHHHHHHHhhhhHHHHHhcHHHHHHH-hCCChhHH--HHHHHHHHHhhhhhhhhhhhhhhhhhccCc
Q 017795          127 FTLPQALMKADFLLLFFSLVLASGSGLTVIDNLGQICQS-LGYADTSI--YVSMISIWNFLGRVGGGYFSEAIVRKFAYP  203 (366)
Q Consensus       127 ~~~~~~l~~~~~~ll~~~~~~~~~~~~~~~~~l~~i~~~-~g~~~~~~--~~sl~~i~~~~g~~~~G~lsD~~grr~~~~  203 (366)
                      .++++.++++.+|.+.+..++.......+..++|.+.++ +|++....  ..+++.++..++.++.|+++||+++|+...
T Consensus       252 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lp~~l~~~~g~s~~~~g~~~~~~~~~~~i~~~~~g~l~d~~~~~~~~~  331 (465)
T TIGR00894       252 LPIKAIPKSLPVWAIWFAIFGHFWLYTILPTYLPTFISWVLRVSGKENGLLSSLPYLFAWLCSIFAGYLADFLKSSKTLS  331 (465)
T ss_pred             CCHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcChHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCc
Confidence            358889999999999998888888888888899998755 78887655  677888999999999999999998776554


Q ss_pred             hhHH----HHHHHHHHHHHHHHHHh-c-chhHHHHHHHHHHHHhhhhhhhHHHHHHHhhCCCchhhHHHHHHhHhhhhHH
Q 017795          204 RPVA----MAVAQVVMAFALLYYAI-G-WPGEIYVTTVLVGLSYGAHWAIVPAAASELFGLKSFGALYNFLTLASPAGSL  277 (366)
Q Consensus       204 R~~~----~~~~~~~~~~~~~l~~~-~-~~~~l~~~~~l~G~~~g~~~~~~~~~~se~f~~~~~g~~~g~~~~~~~~G~~  277 (366)
                      |...    ..++..+.++..+.... . +....+++..+.+.+.+...+.......|.. ++..|...++.+..+.+|+.
T Consensus       332 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~-~~~~g~~~g~~~~~~~l~~~  410 (465)
T TIGR00894       332 LTAARKIFNGIGGLGPGIFAYALPYLSAAFYLTIIILTLANAVSSGPLAGVLINSLDLA-PRFLGFIKGITGLPGFIGGL  410 (465)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHcCCchHHHHHHHHHHHHHhhhhhhhhhhchhhcC-hhHHHHHHHHHHHHHHHHHH
Confidence            4322    12221111111111121 1 2222333344444444444444444555655 45899999999999999999


Q ss_pred             HhhhhHHHHHhhhhhhhhhhhhhhccCCCCCcccCCCCCCcccCCcchHHHHHHHHHHHHHHHHHHHHHHhhc
Q 017795          278 IFSGVIASGIYDYYAEKQAGLLWKYNGNMLPVSFRDQETPTCLGSICYSITCGIMAGLCIIAMVMSLIVVHRT  350 (366)
Q Consensus       278 i~gp~i~G~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~g~~~~~~~f~i~~~~~~~~~~~~~~~~~~~  350 (366)
                      + +|.+.|++.|....  +                           .|..+|++.+++++++.++..++....
T Consensus       411 i-~p~l~g~~~~~~~~--~---------------------------~~~~~f~~~~~~~~i~~i~~~~~~~~~  453 (465)
T TIGR00894       411 I-ASTLAGNILSQDSK--N---------------------------VWLIVFLIMAFVNILCVIFYLIFGSAE  453 (465)
T ss_pred             H-HHHhhheeeCCCCc--h---------------------------HHHHHHHHHHHHHHHHHHHeeeeecce
Confidence            6 89999998875421  0                           399999999988888877766544333

>PRK11102 bicyclomycin/multidrug efflux system; Provisional

Probab=99.47  E-value=1.1e-12  Score=127.40  Aligned_cols=159  Identities=18%  Similarity=0.230  Sum_probs=130.4

Q ss_pred             HHHHHhcHHHHHHHhCCChhHH--HHHHHHHHHhhhhhhhhhhhhhhhhhccCchhHHHHHHHHHHHHHHHHHH-hcchh
Q 017795          152 GLTVIDNLGQICQSLGYADTSI--YVSMISIWNFLGRVGGGYFSEAIVRKFAYPRPVAMAVAQVVMAFALLYYA-IGWPG  228 (366)
Q Consensus       152 ~~~~~~~l~~i~~~~g~~~~~~--~~sl~~i~~~~g~~~~G~lsD~~grr~~~~R~~~~~~~~~~~~~~~~l~~-~~~~~  228 (366)
                      ...+...+|.+.+++|.+..+.  ..+...++..++++++|+++||+|||+..      ..+.++.+++.+++. ..+..
T Consensus         7 ~~~~~p~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~------~~~~~~~~i~~~~~~~~~~~~   80 (377)
T PRK11102          7 IDMYLPALPVIAADFGVSAGSVQMTLSAYILGFAIGQLFYGPMADSFGRKPVI------LGGTLVFALAAVACALAQTID   80 (377)
T ss_pred             HHHHhccHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHhhchHHhhcCChHHH------HHHHHHHHHHHHHHHHHccHH
Confidence            3445678899999999988766  77888899999999999999999987654      556666666665554 44556


Q ss_pred             HHHHHHHHHHHHhhhhhhhHHHHHHHhhCCCchhhHHHHHHhHhhhhHHHhhhhHHHHHhhhhhhhhhhhhhhccCCCCC
Q 017795          229 EIYVTTVLVGLSYGAHWAIVPAAASELFGLKSFGALYNFLTLASPAGSLIFSGVIASGIYDYYAEKQAGLLWKYNGNMLP  308 (366)
Q Consensus       229 ~l~~~~~l~G~~~g~~~~~~~~~~se~f~~~~~g~~~g~~~~~~~~G~~i~gp~i~G~l~d~~~~~~~~~~~~~~~~~~~  308 (366)
                      .+++..++.|++.+...+...+++.|.++.++++.+.++.+....+|..+ +|.+++.+.+..+                
T Consensus        81 ~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~-~~~~~~~l~~~~~----------------  143 (377)
T PRK11102         81 QLIYMRFLHGLAAAAASVVINALMRDMFPKEEFSRMMSFVTLVMTIAPLL-APIIGGWLLVWFS----------------  143 (377)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHcC----------------
Confidence            77788889999999888888999999999999999999999999999996 9999999998776                


Q ss_pred             cccCCCCCCcccCCcchHHHHHHHHHHHHHHHHHHHHHHhh
Q 017795          309 VSFRDQETPTCLGSICYSITCGIMAGLCIIAMVMSLIVVHR  349 (366)
Q Consensus       309 ~~~~~~~~~~c~g~~~~~~~f~i~~~~~~~~~~~~~~~~~~  349 (366)
                                      |++.|++.++++++..++..+..++
T Consensus       144 ----------------~~~~~~~~~~~~~~~~~~~~~~~~~  168 (377)
T PRK11102        144 ----------------WHAIFWVLALAAILAAALVFFFIPE  168 (377)
T ss_pred             ----------------hHHHHHHHHHHHHHHHHHHHHhCCc
Confidence                            9999999888887776665554443

>PRK09874 drug efflux system protein MdtG; Provisional

Probab=99.47  E-value=4.2e-12  Score=124.44  Aligned_cols=172  Identities=15%  Similarity=0.160  Sum_probs=131.5

Q ss_pred             HHHHHHHHHHHhhhhHHHHHhcHHHHHHHhCCChhH-------HHHHHHHHHHhhhhhhhhhhhhhhhhhccCchhHHHH
Q 017795          137 DFLLLFFSLVLASGSGLTVIDNLGQICQSLGYADTS-------IYVSMISIWNFLGRVGGGYFSEAIVRKFAYPRPVAMA  209 (366)
Q Consensus       137 ~~~ll~~~~~~~~~~~~~~~~~l~~i~~~~g~~~~~-------~~~sl~~i~~~~g~~~~G~lsD~~grr~~~~R~~~~~  209 (366)
                      .+..+++..++.......+...+|.+.+++|.+..+       ...++..+...++.+++|+++||++||+..      .
T Consensus        15 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~------~   88 (408)
T PRK09874         15 NLTVAWLGCFLTGAAFSLVMPFLPLYVEQLGVTGHSALNMWSGLVFSITFLFSAIASPFWGGLADRKGRKIML------L   88 (408)
T ss_pred             HHHHHHHHHHHHHHHHHHhhhhHHHHHHHhCCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhCcHHHH------H
Confidence            455666666666666666777899999999987532       256777788899999999999999987654      4


Q ss_pred             HHHHHHHHHHHHHH-hcchhHHHHHHHHHHHHhhhhhhhHHHHHHHhhCCCchhhHHHHHHhHhhhhHHHhhhhHHHHHh
Q 017795          210 VAQVVMAFALLYYA-IGWPGEIYVTTVLVGLSYGAHWAIVPAAASELFGLKSFGALYNFLTLASPAGSLIFSGVIASGIY  288 (366)
Q Consensus       210 ~~~~~~~~~~~l~~-~~~~~~l~~~~~l~G~~~g~~~~~~~~~~se~f~~~~~g~~~g~~~~~~~~G~~i~gp~i~G~l~  288 (366)
                      .+.++.+++.+++. ..+...+++..++.|++.+ ..+.....+.+.+++++++.+.++.+....+|..+ +|.++|.+.
T Consensus        89 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~-~~~~~~~l~  166 (408)
T PRK09874         89 RSALGMGIVMVLMGLAQNIWQFLILRALLGLLGG-FVPNANALIATQVPRNKSGWALGTLSTGGVSGALL-GPLAGGLLA  166 (408)
T ss_pred             HHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhh-hHHhHHHHHHHhcCHhhhhHHHHHHHHHHHHHHHH-HHHHHHHHH
Confidence            55555555555544 3455567778888888754 45666678889999999999999999999999996 999999998


Q ss_pred             hhhhhhhhhhhhhccCCCCCcccCCCCCCcccCCcchHHHHHHHHHHHHHHHHHHHHHHh
Q 017795          289 DYYAEKQAGLLWKYNGNMLPVSFRDQETPTCLGSICYSITCGIMAGLCIIAMVMSLIVVH  348 (366)
Q Consensus       289 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~g~~~~~~~f~i~~~~~~~~~~~~~~~~~  348 (366)
                      +..+                                |+++|++.+++.+++.+...++.+
T Consensus       167 ~~~~--------------------------------~~~~~~~~~~~~~~~~~~~~~~~~  194 (408)
T PRK09874        167 DSYG--------------------------------LRPVFFITASVLFLCFLVTLFCIR  194 (408)
T ss_pred             HHhC--------------------------------HHHHHHHHHHHHHHHHHHHHHHhc
Confidence            8776                                999999998887777666655544

>PRK09584 tppB putative tripeptide transporter permease; Reviewed

Probab=99.46  E-value=3.6e-12  Score=129.47  Aligned_cols=173  Identities=15%  Similarity=0.181  Sum_probs=129.8

Q ss_pred             Hhhhh-HHHHHHHHHHHhhhhHHHHHhcHHHHH-HHhCCChhHH--HHHHHHHHHhhhhhhhhhhhhh-hhhhccCchhH
Q 017795          132 ALMKA-DFLLLFFSLVLASGSGLTVIDNLGQIC-QSLGYADTSI--YVSMISIWNFLGRVGGGYFSEA-IVRKFAYPRPV  206 (366)
Q Consensus       132 ~l~~~-~~~ll~~~~~~~~~~~~~~~~~l~~i~-~~~g~~~~~~--~~sl~~i~~~~g~~~~G~lsD~-~grr~~~~R~~  206 (366)
                      .++++ .+|.+++..++.....+.+..+++.+. +++|++.+++  ..+.+........+++|+++|| +|||+.+    
T Consensus        16 ~~~~p~~~~~~~~~~~~~~~~~y~~~~~l~~yl~~~lg~s~~~a~~~~~~~~~~~~~~~~~~G~LaDr~~G~r~~~----   91 (500)
T PRK09584         16 AFKQPKAFYLIFSIELWERFGYYGLQGIMAVYLVKQLGMSEADSITLFSSFSALVYGLVAIGGWLGDKVLGTKRVI----   91 (500)
T ss_pred             hhcCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchHHHH----
Confidence            34555 488888887887777777778888876 6789987765  4444444445556789999999 5998755    


Q ss_pred             HHHHHHHHHHHHHHHHHhc--chhHHHHHHHHHHHHhhhhhhhHHHHHHHhhCCCc--hhhHHHHHHhHhhhhHHHhhhh
Q 017795          207 AMAVAQVVMAFALLYYAIG--WPGEIYVTTVLVGLSYGAHWAIVPAAASELFGLKS--FGALYNFLTLASPAGSLIFSGV  282 (366)
Q Consensus       207 ~~~~~~~~~~~~~~l~~~~--~~~~l~~~~~l~G~~~g~~~~~~~~~~se~f~~~~--~g~~~g~~~~~~~~G~~i~gp~  282 (366)
                        ..+.++++++++++...  ....++++.+++|+|.|...+...++++|.|+.++  ++.++++.+++.++|+.+ ||.
T Consensus        92 --~~g~~~~~ig~~l~~~~~~~~~~l~~~~~l~gig~g~~~~~~~~l~~~~f~~~~~~~~~~~~~~~~~~~iG~~~-gp~  168 (500)
T PRK09584         92 --MLGAIVLAIGYALVAWSGHDAGIVYMGMATIAVGNGLFKANPSSLLSTCYEKDDPRLDGAFTMYYMSINIGSFF-SML  168 (500)
T ss_pred             --HHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHhhhcccCCHHHHHHHhcCCCchhhhhcchHHHHHHHHHHHH-HHH
Confidence              66667777776666543  23345667788899988888888889999998653  556889999999999996 999


Q ss_pred             HHHHHhhhhhhhhhhhhhhccCCCCCcccCCCCCCcccCCcchHHHHHHHHHHHHHHHHHH
Q 017795          283 IASGIYDYYAEKQAGLLWKYNGNMLPVSFRDQETPTCLGSICYSITCGIMAGLCIIAMVMS  343 (366)
Q Consensus       283 i~G~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~g~~~~~~~f~i~~~~~~~~~~~~  343 (366)
                      +.|++.|..+                                |++.|++.++...++.+..
T Consensus       169 i~g~l~~~~g--------------------------------~~~~F~i~~i~~~i~~i~~  197 (500)
T PRK09584        169 ATPWLAAKYG--------------------------------WSVAFALSVVGMLITVVNF  197 (500)
T ss_pred             HHHHHHHhhC--------------------------------HHHHHHHHHHHHHHHHHHH
Confidence            9999998877                                9999998876555554433

>PRK12382 putative transporter; Provisional

Probab=99.46  E-value=6.4e-12  Score=122.95  Aligned_cols=154  Identities=12%  Similarity=0.049  Sum_probs=119.9

Q ss_pred             HHHhcHHHHHHHhCCChhHHHHHHHHHHHhhhhhhhhhhhhhhhhhccCchhHHHHHHHHHHHHHHHHHH-hcchhHHHH
Q 017795          154 TVIDNLGQICQSLGYADTSIYVSMISIWNFLGRVGGGYFSEAIVRKFAYPRPVAMAVAQVVMAFALLYYA-IGWPGEIYV  232 (366)
Q Consensus       154 ~~~~~l~~i~~~~g~~~~~~~~sl~~i~~~~g~~~~G~lsD~~grr~~~~R~~~~~~~~~~~~~~~~l~~-~~~~~~l~~  232 (366)
                      ....+.+.+.++.|++......+...++..+++++.|+++||+++|+..      ..+..+++++.+++. ..+....++
T Consensus       234 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~~r~g~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~  307 (392)
T PRK12382        234 VIGTFVSLYFASKGWAMAGFTLTAFGGAFVLMRVLFGWMPDRFGGVKVA------IVSLLVETVGLLLLWLAPTAWVALA  307 (392)
T ss_pred             HHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHHHHHHHHHHhcCCCeeh------HHHHHHHHHHHHHHHHcccHHHHHH
Confidence            3455677777777876554455667777889999999999999987665      445555555555544 334445566


Q ss_pred             HHHHHHHHhhhhhhhHHHHHHHhhCCCchhhHHHHHHhHhhhhHHHhhhhHHHHHhhhhhhhhhhhhhhccCCCCCcccC
Q 017795          233 TTVLVGLSYGAHWAIVPAAASELFGLKSFGALYNFLTLASPAGSLIFSGVIASGIYDYYAEKQAGLLWKYNGNMLPVSFR  312 (366)
Q Consensus       233 ~~~l~G~~~g~~~~~~~~~~se~f~~~~~g~~~g~~~~~~~~G~~i~gp~i~G~l~d~~~~~~~~~~~~~~~~~~~~~~~  312 (366)
                      +.++.|++.+...+...+.+.+.++++++|+++|+.+....+|..+ ||.++|++.|..+                    
T Consensus       308 ~~~l~g~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~i-g~~~~g~l~~~~g--------------------  366 (392)
T PRK12382        308 GAALTGAGCSLIFPALGVEVVKRVPSQVRGTALGGYAAFQDIAYGV-SGPLAGMLATSFG--------------------  366 (392)
T ss_pred             HHHHHHHHHHhHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHhC--------------------
Confidence            7778888888877777888899999999999999999999999996 9999999999887                    


Q ss_pred             CCCCCcccCCcchHHHHHHHHHHHHHHHHHHHHH
Q 017795          313 DQETPTCLGSICYSITCGIMAGLCIIAMVMSLIV  346 (366)
Q Consensus       313 ~~~~~~c~g~~~~~~~f~i~~~~~~~~~~~~~~~  346 (366)
                                  |++.|++.+++.+++.++.+..
T Consensus       367 ------------~~~~~~~~~~~~~~~~~~~~~~  388 (392)
T PRK12382        367 ------------YPSVFLAGAISAVLGIIVTILS  388 (392)
T ss_pred             ------------chHHHHHHHHHHHHHHHHHHhh
Confidence                        9999999988877776665543

>TIGR00712 glpT glycerol-3-phosphate transporter

Probab=99.46  E-value=2.5e-12  Score=128.17  Aligned_cols=176  Identities=14%  Similarity=0.134  Sum_probs=128.1

Q ss_pred             hhHHHHHHHHHHHhhhhHHHHHhcHHHHHHHhCCChhHH--HHHHHHHHHhhhhhhhhhhhhhhhhhccCchhHHHHHHH
Q 017795          135 KADFLLLFFSLVLASGSGLTVIDNLGQICQSLGYADTSI--YVSMISIWNFLGRVGGGYFSEAIVRKFAYPRPVAMAVAQ  212 (366)
Q Consensus       135 ~~~~~ll~~~~~~~~~~~~~~~~~l~~i~~~~g~~~~~~--~~sl~~i~~~~g~~~~G~lsD~~grr~~~~R~~~~~~~~  212 (366)
                      +..+|.+.+.+.+.......+....|.+. ++|++..+.  ..+++.++..++.+..|+++||+|||+..      ..+.
T Consensus        26 ~~~~~~~~~~~~~~~~~~~~~~~~~p~~~-~~g~s~~~~g~~~~~~~~~~~~~~~~~G~l~dr~g~~~~~------~~~~   98 (438)
T TIGR00712        26 WQVFLGIFFGYAAYYLVRKNFALAMPYLV-EQGFSKGELGFALSAISIAYGFSKFIMGSVSDRSNPRVFL------PAGL   98 (438)
T ss_pred             HHHHHHHHHHHHHHHHHhccHHhhhHHHH-HcCCCHhHhHHHHHHHHHHHHHhhhccchhhhccCCceeh------HHHH
Confidence            34445444544444444444455667655 468887765  77888899999999999999999998765      5555


Q ss_pred             HHHHHHHHHHHh-----cchhHHHHHHHHHHHHhhhhhhhHHHHHHHhhCCCchhhHHHHHHhHhhhhHHHhhhhHHHHH
Q 017795          213 VVMAFALLYYAI-----GWPGEIYVTTVLVGLSYGAHWAIVPAAASELFGLKSFGALYNFLTLASPAGSLIFSGVIASGI  287 (366)
Q Consensus       213 ~~~~~~~~l~~~-----~~~~~l~~~~~l~G~~~g~~~~~~~~~~se~f~~~~~g~~~g~~~~~~~~G~~i~gp~i~G~l  287 (366)
                      ++.+++.++...     .+...+++..++.|++.|..++.....+.|.++++++|++.++.+.+..+|+.+ +|.+.+.+
T Consensus        99 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~~~g~~~~~~~~~i~~~~~~~~rg~~~~~~~~~~~~g~~~-~~~l~~~~  177 (438)
T TIGR00712        99 ILSAAVMLLMGFVPWATSSIAIMFVLLFLNGWFQGMGWPPCGRTMVHWWSQSERGTIVSIWNCAHNIGGGI-PPLLVLLG  177 (438)
T ss_pred             HHHHHHHHHHhccccccchHHHHHHHHHHHHHHhhcchHHHHHHHHHhcCcccchhHHHHHHHHHHhHhHH-HHHHHHHH
Confidence            555555554432     123345667788899988888888888999999999999999999999999996 78877765


Q ss_pred             hhhhhhhhhhhhhhccCCCCCcccCCCCCCcccCCcchHHHHHHHHHHHHHHHHHHHHHHhh
Q 017795          288 YDYYAEKQAGLLWKYNGNMLPVSFRDQETPTCLGSICYSITCGIMAGLCIIAMVMSLIVVHR  349 (366)
Q Consensus       288 ~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~g~~~~~~~f~i~~~~~~~~~~~~~~~~~~  349 (366)
                      .+...                               .||++|++.++++++..++.+++.++
T Consensus       178 ~~~~~-------------------------------~w~~~f~~~~~~~~i~~~~~~~~~~~  208 (438)
T TIGR00712       178 MAWFN-------------------------------DWHAALYFPAICAIIVALFAFAMMRD  208 (438)
T ss_pred             HHHhh-------------------------------hhHHHHHHHHHHHHHHHHHHHHhccC
Confidence            55332                               29999999998888876666655544

This model describes a very hydrophobic protein, predicted to span the membrane at least 8 times. The two members confirmed experimentally as glycerol-3-phosphate transporters, from E. coli and B. subtilis, share more than 50 % amino acid identity. Proteins of the hexose phosphate and phosphoglycerate transport systems are also quite similar.

>PRK15034 nitrate/nitrite transport protein NarU; Provisional

Probab=99.46  E-value=1.7e-12  Score=129.48  Aligned_cols=184  Identities=13%  Similarity=0.099  Sum_probs=129.9

Q ss_pred             CHHHHhhhhHHHHHHHHHHHhhhhHHHHHhcHHHHHHHhCCChhHH--HHHHHHHHHhhhhhhhhhhhhhhhhhccCchh
Q 017795          128 TLPQALMKADFLLLFFSLVLASGSGLTVIDNLGQICQSLGYADTSI--YVSMISIWNFLGRVGGGYFSEAIVRKFAYPRP  205 (366)
Q Consensus       128 ~~~~~l~~~~~~ll~~~~~~~~~~~~~~~~~l~~i~~~~g~~~~~~--~~sl~~i~~~~g~~~~G~lsD~~grr~~~~R~  205 (366)
                      ...+.+|+++.|++.+.+++.++...++..++|++.++ .++....  ...+..+...++|+++|+++||+|+++..   
T Consensus       244 ~~~~vlk~~~~Wllslly~~tFG~fvg~s~~lp~~~~~-~~~~~~~l~~~~l~~l~~~l~rplgG~LADRiG~~~vl---  319 (462)
T PRK15034        244 DQLPVLQRLHLWLLSLLYLATFGSFIGFSAGFAMLAKT-QFPDVNILRLAFFGPFIGAIARSVGGAISDKFGGVRVT---  319 (462)
T ss_pred             HHHHHhCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHH-HcChHHHHHHHHHHHHHHHHHHHhhHHHHHhcCchHHH---
Confidence            35678899999999999999999888888899999876 4443333  34555778889999999999999987654   


Q ss_pred             HHHHHHHHHHHHHHHH--HHhc-----chhHHHHHHHHHHHHhhhhhhhHHHHHHHhhCC--------------------
Q 017795          206 VAMAVAQVVMAFALLY--YAIG-----WPGEIYVTTVLVGLSYGAHWAIVPAAASELFGL--------------------  258 (366)
Q Consensus       206 ~~~~~~~~~~~~~~~l--~~~~-----~~~~l~~~~~l~G~~~g~~~~~~~~~~se~f~~--------------------  258 (366)
                         .++.+++.++...  +...     +.....+..+...++.|......+-+++++|+.                    
T Consensus       320 ---~~~~i~~~i~~~~~~l~lp~~~~~~~~~~~~~~~~l~~~~G~gngsvfk~ip~~f~~~~~~~~~~~~~~~~~~~~~~  396 (462)
T PRK15034        320 ---LINFIFMAIFSALLFLTLPGTGSGNFIAFYAVFMGLFLTAGLGSGSTFQMIAVIFRQITIYRVKMKGGSDEQAQREA  396 (462)
T ss_pred             ---HHHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHhcccchHHHHhhHHHHhhhhhhcccccccchhHHhhHH
Confidence               3333333332211  1111     111222222222334444444455566666653                    


Q ss_pred             -CchhhHHHHHHhHhhhhHHHhhhhHHHHHhhhhhhhhhhhhhhccCCCCCcccCCCCCCcccCCcchHHHHHHHHHHHH
Q 017795          259 -KSFGALYNFLTLASPAGSLIFSGVIASGIYDYYAEKQAGLLWKYNGNMLPVSFRDQETPTCLGSICYSITCGIMAGLCI  337 (366)
Q Consensus       259 -~~~g~~~g~~~~~~~~G~~i~gp~i~G~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~g~~~~~~~f~i~~~~~~  337 (366)
                       ++.|...|+....+.+|+++ -|.+.|..++.++                               +|...|++..+..+
T Consensus       397 ~~~~g~v~G~v~a~G~~Ggf~-~p~~~g~~~~~~g-------------------------------~~~~~~~~~~~~~~  444 (462)
T PRK15034        397 VTETAAALGFISAIGAVGGFF-IPQAFGMSLNMTG-------------------------------SPVGAMKVFLIFYI  444 (462)
T ss_pred             HHHHHHHHHHHHHHHHcccch-hhHHHHHHHHHcC-------------------------------CcHHHHHHHHHHHH
Confidence             26889999999999999997 6999999999887                               48999999999999


Q ss_pred             HHHHHHHHHHhhc
Q 017795          338 IAMVMSLIVVHRT  350 (366)
Q Consensus       338 ~~~~~~~~~~~~~  350 (366)
                      ++.++.++.+.|.
T Consensus       445 ~~~~~~w~~y~r~  457 (462)
T PRK15034        445 VCVLLTWLVYGRR  457 (462)
T ss_pred             HHHHHHHHHhccC
Confidence            9999988877664

>PRK15462 dipeptide/tripeptide permease D; Provisional

Probab=99.45  E-value=3e-12  Score=128.90  Aligned_cols=167  Identities=16%  Similarity=0.235  Sum_probs=127.2

Q ss_pred             HHHHHHHHHHHhhhhHHHHHhcHHHHHH-HhCCChhHH--HHHHHHHHHhhhhhhhhhhhhhh-hhhccCchhHHHHHHH
Q 017795          137 DFLLLFFSLVLASGSGLTVIDNLGQICQ-SLGYADTSI--YVSMISIWNFLGRVGGGYFSEAI-VRKFAYPRPVAMAVAQ  212 (366)
Q Consensus       137 ~~~ll~~~~~~~~~~~~~~~~~l~~i~~-~~g~~~~~~--~~sl~~i~~~~g~~~~G~lsD~~-grr~~~~R~~~~~~~~  212 (366)
                      .+|.+++..++.....+++..++|.+++ ++|++..++  ..+.+.....++.+++|+++||+ |||+..      .++.
T Consensus        10 ~l~~l~~~~~~e~fs~Yg~~~~L~~yL~~~lgls~~~a~~i~~~~~~~~~l~~ligG~LaDRilGrrr~i------liG~   83 (493)
T PRK15462         10 AIYYVVALQIWEYFSFYGMRALLILYLTNQLKYDDNHAYELFSAYCSLVYVTPILGGFLADKVLGNRMAV------MLGA   83 (493)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCcHHHH------HHHH
Confidence            4666666666666677777788888875 479988766  67777788889999999999999 998755      6777


Q ss_pred             HHHHHHHHHHHhc--chhHHHHHHHHHHHHhhhhhhhHHHHHHHhhCCC--chhhHHHHHHhHhhhhHHHhhhhHHHHHh
Q 017795          213 VVMAFALLYYAIG--WPGEIYVTTVLVGLSYGAHWAIVPAAASELFGLK--SFGALYNFLTLASPAGSLIFSGVIASGIY  288 (366)
Q Consensus       213 ~~~~~~~~l~~~~--~~~~l~~~~~l~G~~~g~~~~~~~~~~se~f~~~--~~g~~~g~~~~~~~~G~~i~gp~i~G~l~  288 (366)
                      ++++++++++...  ....++++..+.++|.|...+...++++|.|+++  +|.+++++.+...++|+.+ +|.+.|++.
T Consensus        84 il~~lg~lll~~~~~~~~~~~l~l~li~iG~G~~~~~~~alv~elfp~~~~~R~sgf~i~Y~~~nlG~~i-ap~l~g~L~  162 (493)
T PRK15462         84 LLMAIGHVVLGASEIHPSFLYLSLAIIVCGYGLFKSNVSCLLGELYEPTDPRRDGGFSLMYAAGNVGSII-APIACGYAQ  162 (493)
T ss_pred             HHHHHHHHHHHHhhcchhHHHHHHHHHHHhcccccccHHHHHHHHCCCCCccccceehHHHHHHHHHHHH-HHHHHHHHH
Confidence            7777777665532  2233455555666777776677788999999876  6999999999999999996 999999998


Q ss_pred             hhhhhhhhhhhhhccCCCCCcccCCCCCCcccCCcchHHHHHHHHHHHHHHHHH
Q 017795          289 DYYAEKQAGLLWKYNGNMLPVSFRDQETPTCLGSICYSITCGIMAGLCIIAMVM  342 (366)
Q Consensus       289 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~g~~~~~~~f~i~~~~~~~~~~~  342 (366)
                      +..+                                |++.|.+.++..+++.+.
T Consensus       163 ~~~G--------------------------------w~~~F~iaaigm~l~li~  184 (493)
T PRK15462        163 EEYS--------------------------------WAMGFGLAAVGMIAGLVI  184 (493)
T ss_pred             hhhC--------------------------------hHHHHHHHHHHHHHHHHH
Confidence            8776                                999998876544444433

>TIGR00712 glpT glycerol-3-phosphate transporter

Probab=99.45  E-value=3e-12  Score=127.60  Aligned_cols=186  Identities=16%  Similarity=0.152  Sum_probs=126.9

Q ss_pred             HHhhhhHHHHHHHHHHHhhhhHHHHHhcHHHHHHH-hCCChhHH--HHHHHHHHHhhhhhhhhhhhhhhhhhccCchhHH
Q 017795          131 QALMKADFLLLFFSLVLASGSGLTVIDNLGQICQS-LGYADTSI--YVSMISIWNFLGRVGGGYFSEAIVRKFAYPRPVA  207 (366)
Q Consensus       131 ~~l~~~~~~ll~~~~~~~~~~~~~~~~~l~~i~~~-~g~~~~~~--~~sl~~i~~~~g~~~~G~lsD~~grr~~~~R~~~  207 (366)
                      ..++++.+|.+.+..++.....+....++|.+.++ .|++...+  ..+++.+.+.++++++|+++||+++++..   ..
T Consensus       246 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~l~~~~g~s~~~~~~~~~~~~~~~~ig~~~~g~l~dr~~~~~~~---~~  322 (438)
T TIGR00712       246 YVLPNKLLWYIAIANVFVYLLRYGVLDWSPTYLKEVKHFALDKSSWAYFLYEYAGIPGTLLCGWMSDKVFKGNRG---AT  322 (438)
T ss_pred             HHccCchHHHHHHHHHHHHHHHHHHHHhHHHHHHHccCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHhccCccc---HH
Confidence            35678889988777666666666777899999876 58887655  66778888999999999999999765432   11


Q ss_pred             HHHHHHHHHHHHHHHHh---cchhHHHHHHHHHHHHhhhhhhhHHHHHHHhhCCCchhhHHHHHHhHhhhhHHHhhhhHH
Q 017795          208 MAVAQVVMAFALLYYAI---GWPGEIYVTTVLVGLSYGAHWAIVPAAASELFGLKSFGALYNFLTLASPAGSLIFSGVIA  284 (366)
Q Consensus       208 ~~~~~~~~~~~~~l~~~---~~~~~l~~~~~l~G~~~g~~~~~~~~~~se~f~~~~~g~~~g~~~~~~~~G~~i~gp~i~  284 (366)
                      .........++.+++..   .+....++..++.|++..+........+.|.+|++.+|+++|+.+....+|+.+++|.+.
T Consensus       323 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~gg~~~gp~l~  402 (438)
T TIGR00712       323 GVFFMTLVTIAVIVYWMNPAGNPLVDMICMIVIGFLIYGPVMLIGLHALELAPKKAAGTAAGFTGLFGYLGGSVAASAIV  402 (438)
T ss_pred             HHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHccHHHHHHHHHHHhcChhheeeehhhhchHHHhhhhhhcchhH
Confidence            11111111222222221   122223333444555433333333446789999999999999999888887643499999


Q ss_pred             HHHhhhhhhhhhhhhhhccCCCCCcccCCCCCCcccCCcchHHHHHHHHHHHHHHHHHHHHHHhhcH
Q 017795          285 SGIYDYYAEKQAGLLWKYNGNMLPVSFRDQETPTCLGSICYSITCGIMAGLCIIAMVMSLIVVHRTK  351 (366)
Q Consensus       285 G~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~g~~~~~~~f~i~~~~~~~~~~~~~~~~~~~r  351 (366)
                      |.+.|..+                                |.++|++++++++++.+..+++.++.|
T Consensus       403 G~l~~~~g--------------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~  437 (438)
T TIGR00712       403 GYTVDFFG--------------------------------WDGGFMVMIGGSILAVILLIVVMIGEK  437 (438)
T ss_pred             HHHHHhcc--------------------------------chHHHHHHHHHHHHHHHHHHHHHhhcc
Confidence            99999877                                999999999888888888777666543

This model describes a very hydrophobic protein, predicted to span the membrane at least 8 times. The two members confirmed experimentally as glycerol-3-phosphate transporters, from E. coli and B. subtilis, share more than 50 % amino acid identity. Proteins of the hexose phosphate and phosphoglycerate transport systems are also quite similar.

>PLN00028 nitrate transmembrane transporter; Provisional

Probab=99.45  E-value=1.8e-12  Score=130.88  Aligned_cols=184  Identities=14%  Similarity=0.193  Sum_probs=123.9

Q ss_pred             HHHHhhhhHHHHHHHHHHHhhhhHHHHHhcHHHHHH-HhCCChhHH--HHHHHHHHHhhhhhhhhhhhhhhhhhccCc-h
Q 017795          129 LPQALMKADFLLLFFSLVLASGSGLTVIDNLGQICQ-SLGYADTSI--YVSMISIWNFLGRVGGGYFSEAIVRKFAYP-R  204 (366)
Q Consensus       129 ~~~~l~~~~~~ll~~~~~~~~~~~~~~~~~l~~i~~-~~g~~~~~~--~~sl~~i~~~~g~~~~G~lsD~~grr~~~~-R  204 (366)
                      +++.++++++|.+++.+++.......+.+++|.+.. ++|++...+  +.+++.+++.+|++++|+++||++||...+ |
T Consensus       245 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~l~~~~g~s~~~a~~~~~~~~~~~~ig~~~~G~lsDr~~~r~~~~~r  324 (476)
T PLN00028        245 LRYGVTNYRTWILALTYGYSFGVELTMDNIIAEYFYDRFGLSLETAGAIAASFGLMNLFARPAGGYLSDVAARRFGMRGR  324 (476)
T ss_pred             HHHHHcCchhHHHHHHHHHHHHHHHHHHhHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHhcCcchh
Confidence            456678888998888777666666667778888765 469987665  788888999999999999999999876432 4


Q ss_pred             hHHHHHHHHHHHHHHHHHHhc-chhHHHHHHHHHHHHhhhhhhhHHHHHHHhhCCCchhhHHHHHHhHhhhhHHHhhhhH
Q 017795          205 PVAMAVAQVVMAFALLYYAIG-WPGEIYVTTVLVGLSYGAHWAIVPAAASELFGLKSFGALYNFLTLASPAGSLIFSGVI  283 (366)
Q Consensus       205 ~~~~~~~~~~~~~~~~l~~~~-~~~~l~~~~~l~G~~~g~~~~~~~~~~se~f~~~~~g~~~g~~~~~~~~G~~i~gp~i  283 (366)
                      .....+.+++.+++.+++... +.....+..++.+++.+...+..+++++++ +++++|+++|+.+.++.+|+.+ +|  
T Consensus       325 ~~~~~~~~~l~~i~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~-~~~~~g~~~g~~~~~g~lg~~i-~~--  400 (476)
T PLN00028        325 LWALWIVQTLGGVFCIWLGRANSLGAAIVVMILFSIFVQAACGATFGIVPFV-SRRSLGVISGLTGAGGNVGAVL-TQ--  400 (476)
T ss_pred             HHHHHHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHHHhhhhhcccCccc-ChhhchhhhhhhhccccHHHHH-HH--
Confidence            444444555444444443322 223334445555665555455555556665 4678999999987766666664 44  


Q ss_pred             HHHHhhhhhhhhhhhhhhccCCCCCcccCCCCCCcccCCcchHHHHHHHHHHHHHHHHHHHHHH
Q 017795          284 ASGIYDYYAEKQAGLLWKYNGNMLPVSFRDQETPTCLGSICYSITCGIMAGLCIIAMVMSLIVV  347 (366)
Q Consensus       284 ~G~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~g~~~~~~~f~i~~~~~~~~~~~~~~~~  347 (366)
                        ++++..+.                             .+|+.+|++.+++.++++++.+++.
T Consensus       401 --~l~~~~~~-----------------------------~~y~~~f~~~~~~~~i~~~~~~~~~  433 (476)
T PLN00028        401 --LLFFTGSS-----------------------------YSTETGISLMGVMIIACTLPVAFIH  433 (476)
T ss_pred             --HHHHhcCC-----------------------------ccHhhHHHHHHHHHHHHHHHHHhee
Confidence              44443220                             1399999999988888877776654

>TIGR00892 2A0113 monocarboxylate transporter 1

Probab=99.45  E-value=2.8e-12  Score=128.69  Aligned_cols=153  Identities=10%  Similarity=0.104  Sum_probs=118.3

Q ss_pred             HHHhcHHHHHHHhCCChhHH--HHHHHHHHHhhhhhhhhhhhhhhhhhccCchhHHHHHHHHHHHHHHHHHHh-cchhHH
Q 017795          154 TVIDNLGQICQSLGYADTSI--YVSMISIWNFLGRVGGGYFSEAIVRKFAYPRPVAMAVAQVVMAFALLYYAI-GWPGEI  230 (366)
Q Consensus       154 ~~~~~l~~i~~~~g~~~~~~--~~sl~~i~~~~g~~~~G~lsD~~grr~~~~R~~~~~~~~~~~~~~~~l~~~-~~~~~l  230 (366)
                      .+...+|++.+++|.+.++.  ..+.+.++..++.+++|+++||++||+.+      ..+.++.+++.++++. .+...+
T Consensus        37 ~~~~~~~~i~~~~g~s~~~~~~~~s~~~~~~~~~~~~~G~l~dr~g~r~~l------~~~~~~~~~~~~~~~~~~~~~~l  110 (455)
T TIGR00892        37 AVTVFFKELQQIFQATYSETAWISSIMLAVLYAGGPISSILVNRFGCRPVV------IAGGLLASLGMILASFSSNVIEL  110 (455)
T ss_pred             chhhhHHHHHHHhCcchhHHHHHHHHHHHHHHHhhHHHHHHHHHcCchHHH------HhhHHHHHHHHHHHHHhhhHHHH
Confidence            34567888999999987765  67777778888999999999999998654      5556666666666543 334444


Q ss_pred             HH-HHHHHHHHhhhhhhhHHHHHHHhhCCCchhhHHHHHHhHhhhhHHHhhhhHHHHHhhhhhhhhhhhhhhccCCCCCc
Q 017795          231 YV-TTVLVGLSYGAHWAIVPAAASELFGLKSFGALYNFLTLASPAGSLIFSGVIASGIYDYYAEKQAGLLWKYNGNMLPV  309 (366)
Q Consensus       231 ~~-~~~l~G~~~g~~~~~~~~~~se~f~~~~~g~~~g~~~~~~~~G~~i~gp~i~G~l~d~~~~~~~~~~~~~~~~~~~~  309 (366)
                      ++ ..++.|++.+..+....+++.+.|+ ++|+.+.++.+.+..+|..+ +|.+.|.+.+..+                 
T Consensus       111 ~~~~~~l~G~~~~~~~~~~~~~~~~~~~-~~r~~a~g~~~~~~~~g~~~-~~~l~~~l~~~~g-----------------  171 (455)
T TIGR00892       111 YLTAGFITGLGLAFNFQPSLTMLGKYFY-RRRPLANGLAMAGSPVFLST-LAPLNQYLFESFG-----------------  171 (455)
T ss_pred             HHHHHHHHHhcchhhhhHHHHHHHHHHH-hhHHHHHHHHHhcccHHHHH-HHHHHHHHHHHhC-----------------
Confidence            44 3467788887766666678889995 78999999999999999996 8999999998777                 


Q ss_pred             ccCCCCCCcccCCcchHHHHHHHHHHHHHHHHHHHHH
Q 017795          310 SFRDQETPTCLGSICYSITCGIMAGLCIIAMVMSLIV  346 (366)
Q Consensus       310 ~~~~~~~~~c~g~~~~~~~f~i~~~~~~~~~~~~~~~  346 (366)
                                     ||++|++.+++++++.+..+++
T Consensus       172 ---------------wr~~f~~~~~~~~~~~v~~~~~  193 (455)
T TIGR00892       172 ---------------WRGSFLILGGLLLHCCVCGALM  193 (455)
T ss_pred             ---------------hHHHHHHHHHHHHHHHHHHHHh
Confidence                           9999999998887765554433

>TIGR02332 HpaX 4-hydroxyphenylacetate permease

Probab=99.45  E-value=1.3e-12  Score=129.40  Aligned_cols=154  Identities=12%  Similarity=0.089  Sum_probs=107.5

Q ss_pred             hhhhHHHHHHHHHHHhhhhHHHHHhcHHHHHHHh--CCChhHH--HHHHHHHHHhhhhhhhhhhhhhhhhhccCchhHHH
Q 017795          133 LMKADFLLLFFSLVLASGSGLTVIDNLGQICQSL--GYADTSI--YVSMISIWNFLGRVGGGYFSEAIVRKFAYPRPVAM  208 (366)
Q Consensus       133 l~~~~~~ll~~~~~~~~~~~~~~~~~l~~i~~~~--g~~~~~~--~~sl~~i~~~~g~~~~G~lsD~~grr~~~~R~~~~  208 (366)
                      ++++.+|...+.+++.......+..++|.+.+++  |++...+  ..++..++..+|++++|+++||+++|+..     .
T Consensus       239 ~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~l~~~~~~~s~~~~~~~~~~~~l~~~~g~l~~g~l~dr~~~r~~~-----~  313 (412)
T TIGR02332       239 IFTPAIMLYTLAYFCLTNTLSAINIWTPQILQSFNQGSSNIMIGLLAAIPQFCTIFGMIWWSRHSDRLKERKHH-----T  313 (412)
T ss_pred             hcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCcHHHhHHHhhHHHHHHHHHHHHHHHHhcccCccHHH-----H
Confidence            3457789888888888777778889999999885  5554443  67888899999999999999999875321     1


Q ss_pred             HHHHHHHHHHHHHHH-hcchhHHHHHHHHHHHHhhhhhhhHHHHHHHhhCCCchhhHHHHHHhHhhhhHHHhhhhHHHHH
Q 017795          209 AVAQVVMAFALLYYA-IGWPGEIYVTTVLVGLSYGAHWAIVPAAASELFGLKSFGALYNFLTLASPAGSLIFSGVIASGI  287 (366)
Q Consensus       209 ~~~~~~~~~~~~l~~-~~~~~~l~~~~~l~G~~~g~~~~~~~~~~se~f~~~~~g~~~g~~~~~~~~G~~i~gp~i~G~l  287 (366)
                      ....++.+++..+.. ..+....+.+..+.++|.....+..+....|.+|++++++++|+.+....+|+.+ +|.+.|.+
T Consensus       314 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~a~g~~~~~~~~g~~~-~p~~~g~i  392 (412)
T TIGR02332       314 ALPYLFAAAGWLLASATDHNLIQLLGIIMASMGSFSAMAIFWTTPDQSISLQARAIAIAVINATGNIGSAL-SPFLIGIL  392 (412)
T ss_pred             HHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhhhhhhHHHhhcccccchHHHHHHHHHHHHhhhhhhhh-hhhhcccc
Confidence            223333333332222 2222222222333344443333444555577899999999999999999999996 99999999


Q ss_pred             hhhhh
Q 017795          288 YDYYA  292 (366)
Q Consensus       288 ~d~~~  292 (366)
                      .|..+
T Consensus       393 ~~~~g  397 (412)
T TIGR02332       393 KDATG  397 (412)
T ss_pred             cccCC
Confidence            99876

This protein is a part of the Major Facilitator Superfamily (Pfam family pfam07690). Member of this family are found in a number of proteobacterial genomes, but only in the context of having genes for 4-hydroxyphenylacetate (4-HPA) degradation. The protein is characterized by Prieto, et al. (PubMed:9315705) as 4-hydroxyphenylacetate permease in E. coli, where 3-HPA and 3,4-dihydroxyphenylacetate are shown to competitively inhibit 4-HPA transport and therefore also interact specificially.

>PRK03893 putative sialic acid transporter; Provisional

Probab=99.45  E-value=5.2e-12  Score=127.34  Aligned_cols=149  Identities=12%  Similarity=0.176  Sum_probs=121.4

Q ss_pred             HHHHHHHHHHHhhhhHHHHHhcHHHHHHHhCCChhHH--HHHHHHHHHhhhhhhhhhhhhhhhhhccCchhHHHHHHHHH
Q 017795          137 DFLLLFFSLVLASGSGLTVIDNLGQICQSLGYADTSI--YVSMISIWNFLGRVGGGYFSEAIVRKFAYPRPVAMAVAQVV  214 (366)
Q Consensus       137 ~~~ll~~~~~~~~~~~~~~~~~l~~i~~~~g~~~~~~--~~sl~~i~~~~g~~~~G~lsD~~grr~~~~R~~~~~~~~~~  214 (366)
                      .+..+++.+++...........+|.+.+++|.+..+.  ..+.+.++..++.++.|+++||+|||+..      ..+.++
T Consensus        21 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~------~~~~~~   94 (496)
T PRK03893         21 AFSAAWLGYLLDGFDFVLITLVLTEVQGEFGLTTVQAASLISAAFISRWFGGLLLGAMGDRYGRRLAM------VISIVL   94 (496)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcHHHH------HHHHHH
Confidence            4455566666655666666677889999999988765  78888889999999999999999997654      556666


Q ss_pred             HHHHHHHHH-hcchhHHHHHHHHHHHHhhhhhhhHHHHHHHhhCCCchhhHHHHHHhHhhhhHHHhhhhHHHHHhhhhh
Q 017795          215 MAFALLYYA-IGWPGEIYVTTVLVGLSYGAHWAIVPAAASELFGLKSFGALYNFLTLASPAGSLIFSGVIASGIYDYYA  292 (366)
Q Consensus       215 ~~~~~~l~~-~~~~~~l~~~~~l~G~~~g~~~~~~~~~~se~f~~~~~g~~~g~~~~~~~~G~~i~gp~i~G~l~d~~~  292 (366)
                      .+++.++.. ..+...+++..++.|++.+..++....++.|.++.++++.+.++...+..+|..+ +|.+.+.+.+..+
T Consensus        95 ~~~~~~~~~~~~~~~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~-~~~~~~~l~~~~~  172 (496)
T PRK03893         95 FSVGTLACGFAPGYWTLFIARLVIGMGMAGEYGSSATYVIESWPKHLRNKASGFLISGFSIGAVV-AAQVYSLVVPVWG  172 (496)
T ss_pred             HHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHhccCC
Confidence            666666555 3455677888999999999888989999999999999999999999999999996 9999999988766

>TIGR00886 2A0108 nitrite extrusion protein (nitrite facilitator)

Probab=99.44  E-value=3.1e-12  Score=123.38  Aligned_cols=146  Identities=14%  Similarity=0.184  Sum_probs=115.7

Q ss_pred             HHHHHHHHHHHhhhhHHHHHhcHHH-HHHHhCCChhHH--HHHHHHHHHhhhhhhhhhhhhhhhhhccCchhHHHHHHHH
Q 017795          137 DFLLLFFSLVLASGSGLTVIDNLGQ-ICQSLGYADTSI--YVSMISIWNFLGRVGGGYFSEAIVRKFAYPRPVAMAVAQV  213 (366)
Q Consensus       137 ~~~ll~~~~~~~~~~~~~~~~~l~~-i~~~~g~~~~~~--~~sl~~i~~~~g~~~~G~lsD~~grr~~~~R~~~~~~~~~  213 (366)
                      .+|..++++++.......+...+|+ +.+++|++....  ..+...++..++.+++|+++||+|||+..      .++.+
T Consensus         2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~------~~~~~   75 (366)
T TIGR00886         2 NLFFSWFGFFLSFSVWFAFSPLAVQMIKDDLGLSTAQLGNLVAVPVLAGAVLRIILGFLVDKFGPRYTT------TLSLL   75 (366)
T ss_pred             chHHHHHHHHHHHHHHHHhHHhhhHHHHHHhCCCHHHhhHhhHHHHHHHHHHHHHHHHHHHHhCchHHH------HHHHH
Confidence            4677888888888888888888996 778899998776  77888999999999999999999998655      56666


Q ss_pred             HHHHHHHHHH-hc-chhHHHHHHHHHHHHhhhhhhhHHHHHHHhhCCCchhhHHHHHHhHhhhhHHHhhhhHHHHHhhh
Q 017795          214 VMAFALLYYA-IG-WPGEIYVTTVLVGLSYGAHWAIVPAAASELFGLKSFGALYNFLTLASPAGSLIFSGVIASGIYDY  290 (366)
Q Consensus       214 ~~~~~~~l~~-~~-~~~~l~~~~~l~G~~~g~~~~~~~~~~se~f~~~~~g~~~g~~~~~~~~G~~i~gp~i~G~l~d~  290 (366)
                      +++++.+++. .. +...+++..++.|++.+ .+....++++|.+++++++.+.++......+|..+ ++.+++.+...
T Consensus        76 ~~~i~~~~~~~~~~~~~~~~~~~~~~g~~~~-~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~-~~~i~~~l~~~  152 (366)
T TIGR00886        76 LLAIPCLWAGLAVQSYSVLLLLRLFIGIAGG-SFASCMPWISFFFPKKIQGTALGLAAGWGNMGGGV-AQFVMPPIIGS  152 (366)
T ss_pred             HHHHHHHHHHHHhhhHHHHHHHHHHHHHhch-hhHhHHHHHHHhcCHhhhhHHHHHHHHHhHHHHHH-HHHHHHHHHHH
Confidence            7777666655 34 55667788888998855 45666778999999999999999988777777775 67776666543

>TIGR00881 2A0104 phosphoglycerate transporter family protein

Probab=99.44  E-value=5.7e-13  Score=128.11  Aligned_cols=165  Identities=13%  Similarity=0.176  Sum_probs=130.4

Q ss_pred             HHHhhhhHHHHHhcHHHHHHHhCCChhHH--HHHHHHHHHhhhhhhhhhhhhhhhhhccCchhHHHHHHHHHHHHHHHHH
Q 017795          145 LVLASGSGLTVIDNLGQICQSLGYADTSI--YVSMISIWNFLGRVGGGYFSEAIVRKFAYPRPVAMAVAQVVMAFALLYY  222 (366)
Q Consensus       145 ~~~~~~~~~~~~~~l~~i~~~~g~~~~~~--~~sl~~i~~~~g~~~~G~lsD~~grr~~~~R~~~~~~~~~~~~~~~~l~  222 (366)
                      +++.......+...+|.+.+++|++..+.  ..++..++..++.+++|+++||+|||+..      ..+.++.+++.+++
T Consensus         4 ~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~------~~~~~~~~~~~~~~   77 (379)
T TIGR00881         4 YAAYYLVRKNFALAMPYLVEEIGLSKTDLGLLLSSFSIAYGISKFVMGSVSDRSNPRVFL------PIGLILCAIVNLFF   77 (379)
T ss_pred             hhHHHHhHHhhhhhhHHHHHHhCCCHhHHHHHHHHHHHHHHhhhhhhhHHHHhhCCeehh------HHHHHHHHHHHHHH
Confidence            34444455556677888899999988765  78888999999999999999999998765      66666666666665


Q ss_pred             H-hcchhHHHHHHHHHHHHhhhhhhhHHHHHHHhhCCCchhhHHHHHHhHhhhhHHHhhh-hHHHHHhhhhhhhhhhhhh
Q 017795          223 A-IGWPGEIYVTTVLVGLSYGAHWAIVPAAASELFGLKSFGALYNFLTLASPAGSLIFSG-VIASGIYDYYAEKQAGLLW  300 (366)
Q Consensus       223 ~-~~~~~~l~~~~~l~G~~~g~~~~~~~~~~se~f~~~~~g~~~g~~~~~~~~G~~i~gp-~i~G~l~d~~~~~~~~~~~  300 (366)
                      . ..+...+++..++.|++.+...+...++++|.++.++++.+.++.+....+|..+ +| .+.+.+.+..+        
T Consensus        78 ~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~-~~~~~~~~~~~~~~--------  148 (379)
T TIGR00881        78 GFSTSLWVMAALWALNGIFQGMGWPPCGRTVTKWFSRSERGTWVSFWNCSHNVGGGL-LPPLVLFGIAELYS--------  148 (379)
T ss_pred             HHhhhHHHHHHHHHHHHhhccccCCchHHHHHHhcCHhhheeeEeehhccchhHHHH-HHHHHHHHHHhcCC--------
Confidence            5 4455677788899999999888999999999999999999999999999999996 88 45566555444        


Q ss_pred             hccCCCCCcccCCCCCCcccCCcchHHHHHHHHHHHHHHHHHHHHHHh
Q 017795          301 KYNGNMLPVSFRDQETPTCLGSICYSITCGIMAGLCIIAMVMSLIVVH  348 (366)
Q Consensus       301 ~~~~~~~~~~~~~~~~~~c~g~~~~~~~f~i~~~~~~~~~~~~~~~~~  348 (366)
                                              |++.|++.++++++..++.+++.+
T Consensus       149 ------------------------~~~~~~~~~~~~~~~~~~~~~~~~  172 (379)
T TIGR00881       149 ------------------------WHWVFIVPGIIAIIVSLICFLLLR  172 (379)
T ss_pred             ------------------------chhHHHHHHHHHHHHHHHHheeeC
Confidence                                    999999888777776655555443

>TIGR00879 SP MFS transporter, sugar porter (SP) family

Probab=99.44  E-value=2.2e-12  Score=127.76  Aligned_cols=177  Identities=13%  Similarity=0.078  Sum_probs=122.6

Q ss_pred             hHHHHHHHHHHHhhhhHHHHHhcHHHHHHHhCCChhHH--HHHHHHHHHhhhhhhhhhhhhhhhhhccCchhHHHHHHHH
Q 017795          136 ADFLLLFFSLVLASGSGLTVIDNLGQICQSLGYADTSI--YVSMISIWNFLGRVGGGYFSEAIVRKFAYPRPVAMAVAQV  213 (366)
Q Consensus       136 ~~~~ll~~~~~~~~~~~~~~~~~l~~i~~~~g~~~~~~--~~sl~~i~~~~g~~~~G~lsD~~grr~~~~R~~~~~~~~~  213 (366)
                      +.++..++.++...........+.|.+.+++|++....  ......++.+++++++|+++||++||+..      ..+.+
T Consensus       284 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~------~~~~~  357 (481)
T TIGR00879       284 RLFLGVVLQWFQQFTGINAIMYYSPTIFENAGVSTDHAFLVSIIVGAVNFAFTFVAIFLVDRFGRRPLL------LIGAA  357 (481)
T ss_pred             HHHHHHHHHHHHHHhCCeehHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHH------HHHHH
Confidence            33444444444433334445667888888999987544  66777888899999999999999987644      44445


Q ss_pred             HHHHHHHHHH---h--cc------hhHHHHHHHHHHHHhhh-hhhhHHHHHHHhhCCCchhhHHHHHHhHhhhhHHHhhh
Q 017795          214 VMAFALLYYA---I--GW------PGEIYVTTVLVGLSYGA-HWAIVPAAASELFGLKSFGALYNFLTLASPAGSLIFSG  281 (366)
Q Consensus       214 ~~~~~~~l~~---~--~~------~~~l~~~~~l~G~~~g~-~~~~~~~~~se~f~~~~~g~~~g~~~~~~~~G~~i~gp  281 (366)
                      +++++.+++.   .  ..      .........+++.+.+. ..+....+++|.+|++.++++.++.+....+|+++ +|
T Consensus       358 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~lg~~i-~~  436 (481)
T TIGR00879       358 GMAICLFVLGILGASFVTGSSKSSGNVAIVFILLFIAFFAMGWGPVPWVIVSEIFPLSLRPKGISIAVAANWLANFI-VG  436 (481)
T ss_pred             HHHHHHHHHHHHhhcccCCcccchhHHHHHHHHHHHHHHHccccCeehhhhhccCChHHHHHHHHHHHHHHHHHHHH-HH
Confidence            5555444433   1  11      12222233333333332 23556667799999999999999999999999996 89


Q ss_pred             hHHHHHhhhhhhhhhhhhhhccCCCCCcccCCCCCCcccCCcchHHHHHHHHHHHHHHHHHHHHHHhhcH
Q 017795          282 VIASGIYDYYAEKQAGLLWKYNGNMLPVSFRDQETPTCLGSICYSITCGIMAGLCIIAMVMSLIVVHRTK  351 (366)
Q Consensus       282 ~i~G~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~g~~~~~~~f~i~~~~~~~~~~~~~~~~~~~r  351 (366)
                      .+.|.+.+..+                                |++.|++.++++++++++.+++.++++
T Consensus       437 ~~~~~~~~~~~--------------------------------~~~~f~~~~~~~~~~~i~~~~~~~~~~  474 (481)
T TIGR00879       437 FLFPTMLESIG--------------------------------VGGVFIFFGGLNVLGLIFVYFFLPETK  474 (481)
T ss_pred             HHHHHHHHhcC--------------------------------ccceehhHHHHHHHHHHHHheecccCC
Confidence            99999998876                                888999999888888877766655544

This model represent the sugar porter subfamily of the major facilitator superfamily (pfam00083)

>PRK11646 multidrug resistance protein MdtH; Provisional

Probab=99.44  E-value=6.2e-12  Score=124.00  Aligned_cols=169  Identities=17%  Similarity=0.215  Sum_probs=129.1

Q ss_pred             HHHHHHHHHhhhhHHHHHhcHHHH-HHHhCCChhHH--HHHHHHHHHhhhhhhhhhhhhhhhhhccCchhHHHHHHHHHH
Q 017795          139 LLLFFSLVLASGSGLTVIDNLGQI-CQSLGYADTSI--YVSMISIWNFLGRVGGGYFSEAIVRKFAYPRPVAMAVAQVVM  215 (366)
Q Consensus       139 ~ll~~~~~~~~~~~~~~~~~l~~i-~~~~g~~~~~~--~~sl~~i~~~~g~~~~G~lsD~~grr~~~~R~~~~~~~~~~~  215 (366)
                      +.+++..++.......+...++.+ .+++|++....  ..+...+...+.++++|+++||++||+..      ..+.++.
T Consensus        13 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~gl~~~~~~l~~~~~~~~~G~l~dr~g~k~~l------~~~~~~~   86 (400)
T PRK11646         13 YFLLIDNMLVVLGFFVVFPLISIRFVDQLGWAAVMVGIALGLRQFIQQGLGIFGGAIADRFGAKPMI------VTGMLMR   86 (400)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHHHhhhhHHHHHhCchHHH------HHHHHHH
Confidence            444455555555555555556654 57789988766  66677788888899999999999987655      6666666


Q ss_pred             HHHHHHHH-hcchhHHHHHHHHHHHHhhhhhhhHHHHHHHhhCCCchhhHHHHHHhHhhhhHHHhhhhHHHHHhhhhhhh
Q 017795          216 AFALLYYA-IGWPGEIYVTTVLVGLSYGAHWAIVPAAASELFGLKSFGALYNFLTLASPAGSLIFSGVIASGIYDYYAEK  294 (366)
Q Consensus       216 ~~~~~l~~-~~~~~~l~~~~~l~G~~~g~~~~~~~~~~se~f~~~~~g~~~g~~~~~~~~G~~i~gp~i~G~l~d~~~~~  294 (366)
                      +++.+++. ..+...+++..++.|++.+...+...+++.|.+++++++.++++......+|..+ ||.++|++. ..+  
T Consensus        87 ~~~~~~~~~~~~~~~l~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~g~~i-g~~l~g~l~-~~g--  162 (400)
T PRK11646         87 AAGFATMAIAHEPWLLWLSCILSGLGGTLFDPPRTALVIKLIRPHQRGRFFSLLMMQDSAGAVI-GALLGSWLL-QYD--  162 (400)
T ss_pred             HHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHH-Hhh--
Confidence            66666655 3455667788888899888777778888999999999999999999999999996 999999998 455  


Q ss_pred             hhhhhhhccCCCCCcccCCCCCCcccCCcchHHHHHHHHHHHHHHHHHHHHHH
Q 017795          295 QAGLLWKYNGNMLPVSFRDQETPTCLGSICYSITCGIMAGLCIIAMVMSLIVV  347 (366)
Q Consensus       295 ~~~~~~~~~~~~~~~~~~~~~~~~c~g~~~~~~~f~i~~~~~~~~~~~~~~~~  347 (366)
                                                    |++.|++.+.++++++++..+..
T Consensus       163 ------------------------------~~~~f~~~~~~~~~~~i~~~~~~  185 (400)
T PRK11646        163 ------------------------------FRLVCATGAVLFVLAAAFNAWLL  185 (400)
T ss_pred             ------------------------------HHHHHHHHHHHHHHHHHHHHHhC
Confidence                                          99999998877776655544443

>PRK09528 lacY galactoside permease; Reviewed

Probab=99.44  E-value=2.1e-12  Score=127.84  Aligned_cols=182  Identities=15%  Similarity=0.136  Sum_probs=127.7

Q ss_pred             HHHHhhhhHHHHHHHHHHHhhhhHHHHHhcHHHHHHHh----CCChhHH--HHHHHHHHHhhhhhhhhhhhhhhhhhccC
Q 017795          129 LPQALMKADFLLLFFSLVLASGSGLTVIDNLGQICQSL----GYADTSI--YVSMISIWNFLGRVGGGYFSEAIVRKFAY  202 (366)
Q Consensus       129 ~~~~l~~~~~~ll~~~~~~~~~~~~~~~~~l~~i~~~~----g~~~~~~--~~sl~~i~~~~g~~~~G~lsD~~grr~~~  202 (366)
                      .++.++++.+|.+.+..++.......+..++|.+..+.    +.+....  ..++..+...++.+.+|+++||+++|+..
T Consensus       216 ~~~~l~~~~~~~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~~~~~  295 (420)
T PRK09528        216 ALALLKLPKFWFLVLYVIGVACFYDVFDQQFPNFFASFFATPEQGTRVFGYLNSFQVFLEALIMFFAPFIINRIGAKNAL  295 (420)
T ss_pred             HHHHccCCCeEeehHHHHHHHHHHHHHHHHHHHHHHHHHhccCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcchhh
Confidence            44567888877655544333333333444566655442    3433332  56667778889999999999999997654


Q ss_pred             chhHHHHHHHHHHHHHHHHHH-hcchhHHHHHHHHHHHHhhhhhhhHHHHHHHhhCCCchhhHHHH-HHhHhhhhHHHhh
Q 017795          203 PRPVAMAVAQVVMAFALLYYA-IGWPGEIYVTTVLVGLSYGAHWAIVPAAASELFGLKSFGALYNF-LTLASPAGSLIFS  280 (366)
Q Consensus       203 ~R~~~~~~~~~~~~~~~~l~~-~~~~~~l~~~~~l~G~~~g~~~~~~~~~~se~f~~~~~g~~~g~-~~~~~~~G~~i~g  280 (366)
                            ..+.++.+++.+++. ..++..+++..++.|++.+.........+.+.++.+.+++.++. .++...+|..+ +
T Consensus       296 ------~~~~~l~~~~~~l~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~lg~~i-g  368 (420)
T PRK09528        296 ------LLAGTIMAVRIIGSGFATGPLEVSILKLLHAFEVPFLLVGVFKYITLNFDVRLSATIYLVGFQFAKQLGAVF-L  368 (420)
T ss_pred             ------HHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCccceeeeeeehHHHHHHHHHHH-H
Confidence                  455555555555554 44556666777788888777666667788999999999988776 56778899996 9


Q ss_pred             hhHHHHHhhhhhhhhhhhhhhccCCCCCcccCCCCCCcccCCcchHHHHHHHHHHHHHHHHHHHHHHhh
Q 017795          281 GVIASGIYDYYAEKQAGLLWKYNGNMLPVSFRDQETPTCLGSICYSITCGIMAGLCIIAMVMSLIVVHR  349 (366)
Q Consensus       281 p~i~G~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~g~~~~~~~f~i~~~~~~~~~~~~~~~~~~  349 (366)
                      |.+.|++.|..|                                |+.+|++.+++.+++.++.+...++
T Consensus       369 ~~~~G~l~~~~G--------------------------------~~~~f~~~~~~~~i~~~~~~~~~~~  405 (420)
T PRK09528        369 STLAGNLYDSIG--------------------------------FQGTYLILGGIVLLFTLISVFTLSG  405 (420)
T ss_pred             HHHHHHHHHhhC--------------------------------chHHHHHHHHHHHHHHHHHHHHhcC
Confidence            999999999887                                9999999888877766655544433

>PRK10207 dipeptide/tripeptide permease B; Provisional

Probab=99.44  E-value=3.7e-12  Score=128.96  Aligned_cols=149  Identities=18%  Similarity=0.264  Sum_probs=119.0

Q ss_pred             HHHHHHHHHHHhhhhHHHHHhcHHHHH-HHhCCChhHH--HHHHHHHHHhhhhhhhhhhhhh-hhhhccCchhHHHHHHH
Q 017795          137 DFLLLFFSLVLASGSGLTVIDNLGQIC-QSLGYADTSI--YVSMISIWNFLGRVGGGYFSEA-IVRKFAYPRPVAMAVAQ  212 (366)
Q Consensus       137 ~~~ll~~~~~~~~~~~~~~~~~l~~i~-~~~g~~~~~~--~~sl~~i~~~~g~~~~G~lsD~-~grr~~~~R~~~~~~~~  212 (366)
                      .+|.+++..++.-.+.+.....++.+. +++|++.+.+  ..+.+.....+..+++|+++|| +|||+.+      ..+.
T Consensus        15 ~~~~~~~~~~~er~~~y~~~~~l~~yl~~~lg~~~~~a~~i~~~~~~~~~~~~~~~G~laDr~~G~r~~~------~~g~   88 (489)
T PRK10207         15 PFFMIFFVELWERFGYYGVQGILAVFFVKQLGFSQEQAFITFGAFAALVYGLISIGGYVGDHLLGTKRTI------VLGA   88 (489)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHhhHHHhhhhccchHHHH------HHHH
Confidence            467777777676677776766676665 5689887765  6677777788888899999999 9998876      7777


Q ss_pred             HHHHHHHHHHHhc-c-hhHHHHHHHHHHHHhhhhhhhHHHHHHHhhCCC--chhhHHHHHHhHhhhhHHHhhhhHHHHHh
Q 017795          213 VVMAFALLYYAIG-W-PGEIYVTTVLVGLSYGAHWAIVPAAASELFGLK--SFGALYNFLTLASPAGSLIFSGVIASGIY  288 (366)
Q Consensus       213 ~~~~~~~~l~~~~-~-~~~l~~~~~l~G~~~g~~~~~~~~~~se~f~~~--~~g~~~g~~~~~~~~G~~i~gp~i~G~l~  288 (366)
                      +++.++++++... + ...++++.++.|+|.|...+...++++|.|+++  +++.++++.+++.++|+.+ ||.++|++.
T Consensus        89 ~~~~~g~~~~~~~~~~~~ll~~~~~l~~ig~g~~~~~~~~li~~~~p~~~~~~~~~~~~~~~~~nig~~~-g~~l~g~l~  167 (489)
T PRK10207         89 IVLAIGYFMTGMSLLKPDLIFIALGTIAVGNGLFKANPASLLSKCYPPKDPRLDGAFTLFYMSINIGSLI-SLSLAPVIA  167 (489)
T ss_pred             HHHHHHHHHHHHhccchhHHHHHHHHHHhccccccCCHHHHHHHhcCCCchhhhcchhHHHHHHHHHHHH-HHHHHHHHH
Confidence            8888887776633 2 234557888899999998888999999999877  4588999999999999996 999999998


Q ss_pred             hhhh
Q 017795          289 DYYA  292 (366)
Q Consensus       289 d~~~  292 (366)
                      +..+
T Consensus       168 ~~~g  171 (489)
T PRK10207        168 DKFG  171 (489)
T ss_pred             HhhC
Confidence            8776

>PLN00028 nitrate transmembrane transporter; Provisional

Probab=99.44  E-value=7.8e-12  Score=126.15  Aligned_cols=173  Identities=13%  Similarity=0.111  Sum_probs=119.8

Q ss_pred             HHHHHhhhhHHHHHhcHHHHHHHhCCChhHH--HHHHHHHHHhhhhhhhhhhhhhhhhhccCchhHHHHHHHHHHHHHHH
Q 017795          143 FSLVLASGSGLTVIDNLGQICQSLGYADTSI--YVSMISIWNFLGRVGGGYFSEAIVRKFAYPRPVAMAVAQVVMAFALL  220 (366)
Q Consensus       143 ~~~~~~~~~~~~~~~~l~~i~~~~g~~~~~~--~~sl~~i~~~~g~~~~G~lsD~~grr~~~~R~~~~~~~~~~~~~~~~  220 (366)
                      +.+++...........+|.+.+++|++..+.  ..+.+.++..++.+++|+++||+|||+..      ..+.++.+++.+
T Consensus        43 ~~~~~~~~~~~~~~~~~~~l~~~~gls~~~~g~~~~~~~~~~~~~~~~~G~l~dr~G~r~~~------~~~~~~~~~~~~  116 (476)
T PLN00028         43 ISFFTCFVSTFAAAPLLPIIRDNLNLTKSDIGNAGIASVSGSIFSRLAMGPVCDLYGPRYGS------AFLLMLTAPAVF  116 (476)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCChHHH------HHHHHHHHHHHH
Confidence            3344444444455566788999999987765  56667778888999999999999997654      455556666655


Q ss_pred             HHH-hcchhHHHHHHHHHHHHhhhhhhhHHHHHHHhhCCCchhhHHHHHHhHhhhhHHHhhhhHHHHHhhhhhhhhhhhh
Q 017795          221 YYA-IGWPGEIYVTTVLVGLSYGAHWAIVPAAASELFGLKSFGALYNFLTLASPAGSLIFSGVIASGIYDYYAEKQAGLL  299 (366)
Q Consensus       221 l~~-~~~~~~l~~~~~l~G~~~g~~~~~~~~~~se~f~~~~~g~~~g~~~~~~~~G~~i~gp~i~G~l~d~~~~~~~~~~  299 (366)
                      +.+ ..+...+++++++.|++.+.. .....+++|.|+.++||.+.|+.+....+|+.+ ++.+.+.+.+.....     
T Consensus       117 ~~~~~~s~~~l~~~r~l~G~~~~~~-~~~~~~i~~~~~~~~rg~a~g~~~~~~~~g~~~-~~~~~~~i~~~~~~~-----  189 (476)
T PLN00028        117 CMSLVSSATGFIAVRFFIGFSLATF-VSCQYWMSTMFNGKIVGTANGIAAGWGNLGGGV-TQLLMPLVFPLIKDA-----  189 (476)
T ss_pred             HHHHhcCHHHHHHHHHHHHHHHHhh-HHHHHHHHHhcChhheeHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHhc-----
Confidence            554 345566777888889887764 334557899999999999999998877777775 666666554422100     


Q ss_pred             hhccCCCCCcccCCCCCCcccCCcchHHHHHHHHHHHHHHHHHHHHH
Q 017795          300 WKYNGNMLPVSFRDQETPTCLGSICYSITCGIMAGLCIIAMVMSLIV  346 (366)
Q Consensus       300 ~~~~~~~~~~~~~~~~~~~c~g~~~~~~~f~i~~~~~~~~~~~~~~~  346 (366)
                                        .+.+..+||++|++.++++++.+++.+++
T Consensus       190 ------------------~~~~~~gWr~~f~i~g~l~l~~~l~~~~~  218 (476)
T PLN00028        190 ------------------GAPSFTAWRIAFFVPGLLHIIMGILVLTL  218 (476)
T ss_pred             ------------------CCcchhhhHHHHHHHHHHHHHHHHHHHHH
Confidence                              00011139999999998887766655544

>PRK03633 putative MFS family transporter protein; Provisional

Probab=99.44  E-value=8.5e-12  Score=121.87  Aligned_cols=173  Identities=14%  Similarity=0.137  Sum_probs=123.7

Q ss_pred             CCHHHHhhhhHHHHHHHHHHHhhhhHHHHHhcHHHHHHHhCCChhHH--HHHHHHHHHhhhhhhhhhhhhhhhhhccCch
Q 017795          127 FTLPQALMKADFLLLFFSLVLASGSGLTVIDNLGQICQSLGYADTSI--YVSMISIWNFLGRVGGGYFSEAIVRKFAYPR  204 (366)
Q Consensus       127 ~~~~~~l~~~~~~ll~~~~~~~~~~~~~~~~~l~~i~~~~g~~~~~~--~~sl~~i~~~~g~~~~G~lsD~~grr~~~~R  204 (366)
                      .+.++.++++.+|......+........+..++|.+.++.|++....  ..++..++..++++..|+++||+++|+..  
T Consensus       191 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lp~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~~~~~~l--  268 (381)
T PRK03633        191 TSIWPMLKLRQARLGVNGCIISGIVLGSLYGLMPLYLNHQGMSDASIGFWMALLVSAGILGQWPIGRLADRFGRLLVL--  268 (381)
T ss_pred             CCHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHhhhHHHHHHcCcHHHH--
Confidence            34667788888876544333333333344567888888889887654  67788888999999999999999987543  


Q ss_pred             hHHHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHhhhhhhhHHHHHHHhhCCCchhhHHHHHHhHhhhhHHHhhhhHH
Q 017795          205 PVAMAVAQVVMAFALLYYAIGWPGEIYVTTVLVGLSYGAHWAIVPAAASELFGLKSFGALYNFLTLASPAGSLIFSGVIA  284 (366)
Q Consensus       205 ~~~~~~~~~~~~~~~~l~~~~~~~~l~~~~~l~G~~~g~~~~~~~~~~se~f~~~~~g~~~g~~~~~~~~G~~i~gp~i~  284 (366)
                          ..+..+++++.+.+. . ....+...++.|++.+...+...+.+.|..++++++...+..+....+|+.+ ||.++
T Consensus       269 ----~~~~~~~~~~~~~~~-~-~~~~~~~~~l~g~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~lG~~i-gp~~~  341 (381)
T PRK03633        269 ----RVQVFVVILGSIAML-S-QAAMAPALFILGAAGFTLYPVAMAWACEKVEHHELVAMNQALLLSYTVGSLL-GPSFT  341 (381)
T ss_pred             ----HHHHHHHHHHHHHHh-h-hHHHHHHHHHHHHHHHhHHHHHHHHHHccCCHHHHHHHHHHHHHHHHHHHHH-HHHHH
Confidence                444444444443332 1 2233345566677666667777777888888888888888888889999996 99999


Q ss_pred             HHHhhhhhhhhhhhhhhccCCCCCcccCCCCCCcccCCcchHHHHHHHHHHHHHHH
Q 017795          285 SGIYDYYAEKQAGLLWKYNGNMLPVSFRDQETPTCLGSICYSITCGIMAGLCIIAM  340 (366)
Q Consensus       285 G~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~g~~~~~~~f~i~~~~~~~~~  340 (366)
                      |++.|..+                                |++.|++.+.+.+++.
T Consensus       342 G~l~~~~g--------------------------------~~~~f~~~~~~~l~~~  365 (381)
T PRK03633        342 AMLMQNYS--------------------------------DNLLFIMIASVSFIYL  365 (381)
T ss_pred             HHHHHHhC--------------------------------ccHHHHHHHHHHHHHH
Confidence            99999887                                8889988777665543

>PRK09952 shikimate transporter; Provisional

Probab=99.44  E-value=1.2e-11  Score=123.37  Aligned_cols=178  Identities=12%  Similarity=0.110  Sum_probs=119.4

Q ss_pred             HhhhhHHHHHHH-HHHHhhhhHHHHHhcHHHHHH-HhCCChhHH--HHHHHHHHHhhhhhhhhhhhhhhhhhccCchhHH
Q 017795          132 ALMKADFLLLFF-SLVLASGSGLTVIDNLGQICQ-SLGYADTSI--YVSMISIWNFLGRVGGGYFSEAIVRKFAYPRPVA  207 (366)
Q Consensus       132 ~l~~~~~~ll~~-~~~~~~~~~~~~~~~l~~i~~-~~g~~~~~~--~~sl~~i~~~~g~~~~G~lsD~~grr~~~~R~~~  207 (366)
                      .+++++.|...+ ..++.....+....++|.+.+ .+|++....  ...+..+..+++.+++|+++||++||+..     
T Consensus       245 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~~g~s~~~~~~~~~~~g~~~~i~~~~~g~l~Dr~grr~~~-----  319 (438)
T PRK09952        245 LLRHPGAFLKIIALRLCELLTMYIVTAFALNYSTQNLGLPRELFLNIGLLVGGLSCLTIPCFAWLADRFGRRRVY-----  319 (438)
T ss_pred             HHHchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCchHHH-----
Confidence            556777776543 344444455566677887764 578876543  34455667788899999999999987543     


Q ss_pred             HHHHHHHHHHHHHHH--H--hcchh-HHHHHHHHHHHHhhhhhhhHHHHHHHhhCCCchhhHHHHHHhH-hhhhHHHhhh
Q 017795          208 MAVAQVVMAFALLYY--A--IGWPG-EIYVTTVLVGLSYGAHWAIVPAAASELFGLKSFGALYNFLTLA-SPAGSLIFSG  281 (366)
Q Consensus       208 ~~~~~~~~~~~~~l~--~--~~~~~-~l~~~~~l~G~~~g~~~~~~~~~~se~f~~~~~g~~~g~~~~~-~~~G~~i~gp  281 (366)
                       ..+.++.+++.+.+  .  ..+.. .+++..++.+++.+...+..+++++|.||.+.|+++.++.+.. ..+|+.+ +|
T Consensus       320 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~e~~p~~~r~tg~g~~~~~~~~lgg~~-~p  397 (438)
T PRK09952        320 -ITGALIGTLSAFPFFMALEAQSIFWIVFFSIMLANIAHDMVVCVQQPMFTEMFGASYRYSGAGVGYQVASVVGGGF-TP  397 (438)
T ss_pred             -HHHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCcchhHHHHhHHHHHHHHHHHHH-HH
Confidence             23333333322211  1  11222 2334455567787777888899999999999999999986554 4578885 89


Q ss_pred             hHHHHHhhhhhhhhhhhhhhccCCCCCcccCCCCCCcccCCcchHHHHHHHHHHHHHHHHHHHHH
Q 017795          282 VIASGIYDYYAEKQAGLLWKYNGNMLPVSFRDQETPTCLGSICYSITCGIMAGLCIIAMVMSLIV  346 (366)
Q Consensus       282 ~i~G~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~g~~~~~~~f~i~~~~~~~~~~~~~~~  346 (366)
                      .+.|++.|..+.                              +|...+.+.+++.+++++..+.+
T Consensus       398 ~i~g~l~~~~~~------------------------------~~~~~~~~~~~~~~i~~v~~~~~  432 (438)
T PRK09952        398 FIAAALVTYFGG------------------------------SWHSVAIYLLAGCLISAMTALLM  432 (438)
T ss_pred             HHHHHHHHhcCC------------------------------CchHHHHHHHHHHHHHHHHHHHc
Confidence            999999986540                              38888888887777776665543

>TIGR01299 synapt_SV2 synaptic vesicle protein SV2

Probab=99.44  E-value=3.7e-12  Score=134.03  Aligned_cols=137  Identities=12%  Similarity=0.131  Sum_probs=106.1

Q ss_pred             HHHHHHHHhhhhhhhhhhhhhhhhhccCchhHHHHHHHHHHHHHHHHHHh-cchhHHHHHHHHHHHHhhhhhhhHHHHHH
Q 017795          175 VSMISIWNFLGRVGGGYFSEAIVRKFAYPRPVAMAVAQVVMAFALLYYAI-GWPGEIYVTTVLVGLSYGAHWAIVPAAAS  253 (366)
Q Consensus       175 ~sl~~i~~~~g~~~~G~lsD~~grr~~~~R~~~~~~~~~~~~~~~~l~~~-~~~~~l~~~~~l~G~~~g~~~~~~~~~~s  253 (366)
                      ..+..++.++|.++.|+++||+|||+.+      .+++++.+++.+++.. .+...+++..++.|++.++.++...++++
T Consensus       601 ~~l~~l~~i~G~il~g~L~Dr~GRr~~l------~~~~~lsai~~ll~~~~~s~~~ll~~~~l~g~~~~~~~~~~~a~~a  674 (742)
T TIGR01299       601 NFLGTLAVLPGNIVSALLMDKIGRLRML------AGSMVLSCISCFFLSFGNSESAMIALLCLFGGLSIAAWNALDVLTV  674 (742)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhCCHHHH------HHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            4455678889999999999999998655      6666666666655553 33445556666778888888899999999


Q ss_pred             HhhCCCchhhHHHHHHhHhhhhHHHhhhhHHHHHhhhhhhhhhhhhhhccCCCCCcccCCCCCCcccCCcchHHHHHHHH
Q 017795          254 ELFGLKSFGALYNFLTLASPAGSLIFSGVIASGIYDYYAEKQAGLLWKYNGNMLPVSFRDQETPTCLGSICYSITCGIMA  333 (366)
Q Consensus       254 e~f~~~~~g~~~g~~~~~~~~G~~i~gp~i~G~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~g~~~~~~~f~i~~  333 (366)
                      |+||++.|++++|+.++...+|+++ ||+++|.+.+. .                                ....|++.+
T Consensus       675 El~Pt~~Rgta~Gi~~~~~rlGaii-gp~i~g~L~~~-~--------------------------------~~~pf~i~a  720 (742)
T TIGR01299       675 ELYPSDKRATAFGFLNALCKAAAVL-GILIFGSFVGI-T--------------------------------KAAPILFAS  720 (742)
T ss_pred             HHcCHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHh-h--------------------------------hHHHHHHHH
Confidence            9999999999999999999999996 99999988764 2                                456777777


Q ss_pred             HHHHHHHHHHHHHHhhcHH
Q 017795          334 GLCIIAMVMSLIVVHRTKS  352 (366)
Q Consensus       334 ~~~~~~~~~~~~~~~~~r~  352 (366)
                      ++.++++++.+++ +++|+
T Consensus       721 ~~lll~~ll~~~L-PET~~  738 (742)
T TIGR01299       721 AALACGGLLALKL-PDTRG  738 (742)
T ss_pred             HHHHHHHHHHHhC-CCCcc
Confidence            7777766665544 56654

This model describes a tightly conserved subfamily of the larger family of sugar (and other) transporters described by pfam model pfam00083. Members of this subfamily include closely related forms SV2A and SV2B of synaptic vesicle protein from vertebrates and a more distantly related homolog (below trusted cutoff) from Drosophila melanogaster. Members are predicted to have two sets of six transmembrane helices.

>PRK11043 putative transporter; Provisional

Probab=99.43  E-value=6.1e-12  Score=123.47  Aligned_cols=161  Identities=10%  Similarity=0.106  Sum_probs=127.0

Q ss_pred             HhhhhHHHHHhcHHHHHHHhCCChhHH--HHHHHHHHHhhhhhhhhhhhhhhhhhccCchhHHHHHHHHHHHHHHHHHH-
Q 017795          147 LASGSGLTVIDNLGQICQSLGYADTSI--YVSMISIWNFLGRVGGGYFSEAIVRKFAYPRPVAMAVAQVVMAFALLYYA-  223 (366)
Q Consensus       147 ~~~~~~~~~~~~l~~i~~~~g~~~~~~--~~sl~~i~~~~g~~~~G~lsD~~grr~~~~R~~~~~~~~~~~~~~~~l~~-  223 (366)
                      ++......+...+|++.+++|.+..+.  ..+++.++..++.+++|+++||+|||+..      ..+.++..++.++.. 
T Consensus        17 ~~~~~~~~~~p~~~~i~~~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~g~r~~~------~~~~~~~~~~~~~~~~   90 (401)
T PRK11043         17 LGFLATDMYLPAFKAIQADLQTSASAVSASLSLFLAGFALGQLLWGPLSDRYGRKPVL------LAGLSLFALGSLGMLW   90 (401)
T ss_pred             HHHHHHHHHHhhHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHhhhhHHhhcCCcHHH------HHHHHHHHHHHHHHHH
Confidence            334444456667788889999988776  78888899999999999999999998654      555555555555544 


Q ss_pred             hcchhHHHHHHHHHHHHhhhhhhhHHHHHHHhhCCCchhhHHHHHHhHhhhhHHHhhhhHHHHHhhhhhhhhhhhhhhcc
Q 017795          224 IGWPGEIYVTTVLVGLSYGAHWAIVPAAASELFGLKSFGALYNFLTLASPAGSLIFSGVIASGIYDYYAEKQAGLLWKYN  303 (366)
Q Consensus       224 ~~~~~~l~~~~~l~G~~~g~~~~~~~~~~se~f~~~~~g~~~g~~~~~~~~G~~i~gp~i~G~l~d~~~~~~~~~~~~~~  303 (366)
                      ..+...+++..++.|++.+...+...+.+.|.++.++++...+..+....+|..+ +|.++|++.+..+           
T Consensus        91 ~~~~~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-g~~i~~~l~~~~g-----------  158 (401)
T PRK11043         91 VESAAQLLVLRFVQAVGVCSAAVIWQALVIDRYPAQKANRVFATIMPLVALSPAL-APLLGAWLLNHFG-----------  158 (401)
T ss_pred             hcCHHHHHHHHHHHHhhhHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHhcCC-----------
Confidence            3455667778888899888777777788999999998999999988888899996 9999999998776           


Q ss_pred             CCCCCcccCCCCCCcccCCcchHHHHHHHHHHHHHHHHHHHHH
Q 017795          304 GNMLPVSFRDQETPTCLGSICYSITCGIMAGLCIIAMVMSLIV  346 (366)
Q Consensus       304 ~~~~~~~~~~~~~~~c~g~~~~~~~f~i~~~~~~~~~~~~~~~  346 (366)
                                           |++.|++.+++.++..++.+.+
T Consensus       159 ---------------------~~~~~~~~~~~~~~~~~~~~~~  180 (401)
T PRK11043        159 ---------------------WQAIFATLFAITLLLILPTLRL  180 (401)
T ss_pred             ---------------------hHHHHHHHHHHHHHHHHHHHHc
Confidence                                 9999999888777766555444

>TIGR00897 2A0118 polyol permease family

Probab=99.43  E-value=1.2e-11  Score=121.76  Aligned_cols=181  Identities=14%  Similarity=0.115  Sum_probs=129.8

Q ss_pred             HHHHhhhhHHHHHHHHHHHhhhhHHHHHhcHHHHHHHhCCChhHH--HHHHHHHHHhhhhhhhhhhhhhhhhhccCchhH
Q 017795          129 LPQALMKADFLLLFFSLVLASGSGLTVIDNLGQICQSLGYADTSI--YVSMISIWNFLGRVGGGYFSEAIVRKFAYPRPV  206 (366)
Q Consensus       129 ~~~~l~~~~~~ll~~~~~~~~~~~~~~~~~l~~i~~~~g~~~~~~--~~sl~~i~~~~g~~~~G~lsD~~grr~~~~R~~  206 (366)
                      ++..++++.+|...+..++..........++|.+.+++|++..+.  ..++..+++.++++..|+++||++||+.. + .
T Consensus       215 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~g~s~~~~~~~~~~~~~~~~ig~~~~g~l~dr~~~~~~~-~-~  292 (402)
T TIGR00897       215 ATILFTNPNVLLGGMVRIINTIGLFGFAVFLPMFVAELGFSTSEWLQIWGTFFFTNIVFNVIFGIVGDKLGWMNTV-R-W  292 (402)
T ss_pred             HHHHHcChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCChhHHHHHHHHHHHHHHHHHHHHHHHHHhhcchhHH-H-H
Confidence            345678899998887777776666777889999999999987765  56777889999999999999999986543 0 0


Q ss_pred             HHHHHHHHHHHHHHHHHh---cchhHHHHHHHHHHHHhhhhhhhHHHHHHHhhCCCchhhHHHHHHhHhhhhHHHhhhhH
Q 017795          207 AMAVAQVVMAFALLYYAI---GWPGEIYVTTVLVGLSYGAHWAIVPAAASELFGLKSFGALYNFLTLASPAGSLIFSGVI  283 (366)
Q Consensus       207 ~~~~~~~~~~~~~~l~~~---~~~~~l~~~~~l~G~~~g~~~~~~~~~~se~f~~~~~g~~~g~~~~~~~~G~~i~gp~i  283 (366)
                      .......+..+.......   .+....+++.++.|++.++..+ ....+++.. ++++|+++|+.+....+|+.+ +|.+
T Consensus       293 ~~~l~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~-~~~~~~~~~-~~~~g~~~g~~~~~~~lg~~~-gp~i  369 (402)
T TIGR00897       293 FGGVGCGIFTLALYYIPQHFGHSFAVALIIAIALGIFLAGYVP-LAAVFPTLA-PKHKGAAMSVLNLSAGLSAFL-APAI  369 (402)
T ss_pred             HHHHHHHHHHHHHHHHHHccCCcHHHHHHHHHHHHHHHHHHHH-HHHHHHhhC-cchhHHHHHHHHHHHHHHHHH-HHHH
Confidence            111111121112111111   2233455667778887776544 345566754 568999999999999999996 9999


Q ss_pred             HHHHhhhhhhhhhhhhhhccCCCCCcccCCCCCCcccCCcchHHHHHHHHHHHHHHHHHHHHH
Q 017795          284 ASGIYDYYAEKQAGLLWKYNGNMLPVSFRDQETPTCLGSICYSITCGIMAGLCIIAMVMSLIV  346 (366)
Q Consensus       284 ~G~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~g~~~~~~~f~i~~~~~~~~~~~~~~~  346 (366)
                      +|.++|..+                                |..+|++.+++.+++.++..++
T Consensus       370 ~g~l~~~~g--------------------------------~~~~~~~~a~~~~i~~~~~~~~  400 (402)
T TIGR00897       370 AVLFIGFFG--------------------------------AIGVVWIFAALYVVSAFLTAFI  400 (402)
T ss_pred             HHHHHhhcc--------------------------------hHHHHHHHHHHHHHHHHHHHHh
Confidence            999999887                                8889999988887777665543

This family of proteins includes the ribitol and D-arabinitol transporters from Klebsiella pneumoniae and the alpha-ketoglutarate permease from Bacillus subtilis.

>TIGR00902 2A0127 phenyl proprionate permease family protein

Probab=99.43  E-value=8.9e-12  Score=121.90  Aligned_cols=157  Identities=10%  Similarity=-0.018  Sum_probs=124.7

Q ss_pred             CHHHHhhhhHHHHHHHHHHHhhhhHHHHHhcHHHHHHHhCCChhHH--HHHHHHHHHhhhhhhhhhhhhhhhhhccCchh
Q 017795          128 TLPQALMKADFLLLFFSLVLASGSGLTVIDNLGQICQSLGYADTSI--YVSMISIWNFLGRVGGGYFSEAIVRKFAYPRP  205 (366)
Q Consensus       128 ~~~~~l~~~~~~ll~~~~~~~~~~~~~~~~~l~~i~~~~g~~~~~~--~~sl~~i~~~~g~~~~G~lsD~~grr~~~~R~  205 (366)
                      +.++.+|++++|.+.+..++.......+..+.|.+.+++|++...+  ..++..+...++.+++|++.||++.|+..   
T Consensus       197 ~~~~~l~~~~~~~~l~~~~l~~~~~~~~~~~~~~~l~~~g~s~~~~g~l~~~~~~~~i~~~~~~~~l~~r~g~~~~l---  273 (382)
T TIGR00902       197 AFIALLKNPMNLRFLAAVCLIQGAHAAYYGFSAIYWQAAGISASATGLLWGIGVLAEIIIFAFSNKLFQNCSARDLL---  273 (382)
T ss_pred             hHHHHHcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHhHHHHHHHHHHHHHHHHHHHhHHHHhhCCHHHHH---
Confidence            4678889999999888877777777777888999999999988765  55556666777777788888888766543   


Q ss_pred             HHHHHHHHHHHHHHHHHH-hcchhHHHHHHHHHHHHhhhhhhhHHHHHHHhhCCCchhhHHHHHH-hHhhhhHHHhhhhH
Q 017795          206 VAMAVAQVVMAFALLYYA-IGWPGEIYVTTVLVGLSYGAHWAIVPAAASELFGLKSFGALYNFLT-LASPAGSLIFSGVI  283 (366)
Q Consensus       206 ~~~~~~~~~~~~~~~l~~-~~~~~~l~~~~~l~G~~~g~~~~~~~~~~se~f~~~~~g~~~g~~~-~~~~~G~~i~gp~i  283 (366)
                         .++.+...+...+++ ..+...++...++.|+++|..++....++.+. +.+++++..++.+ +...+|..+ ||.+
T Consensus       274 ---~~~~~~~~~~~~~~~~~~~~~~~~~~q~l~g~~~~~~~~~~~~~i~~~-~~~~~~~~q~~~~~~~~g~g~~~-g~~~  348 (382)
T TIGR00902       274 ---LISAIACVGRWAIIGAIEAFPLIFLLQILHCGTFAVCHLAAMRYIAAQ-PGSEIAKLQALYNALAMGGLIAI-FTAF  348 (382)
T ss_pred             ---HHHHHHHHHHHHHHHhHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhC-CHhhHHHHHHHHHHHHHHHHHHH-HHHH
Confidence               667777777766666 44556677788899999999888888888887 8888999999976 467788986 9999


Q ss_pred             HHHHhhhhh
Q 017795          284 ASGIYDYYA  292 (366)
Q Consensus       284 ~G~l~d~~~  292 (366)
                      +|+++|..+
T Consensus       349 ~G~l~~~~g  357 (382)
T TIGR00902       349 AGFIYPTLG  357 (382)
T ss_pred             HHHHHHhcc
Confidence            999999887

This family of proteins is involved in the uptake of 3-phenylpropionic acid. This uptake mechanism is for the metabolism of phenylpropanoid compounds and plays an important role in the natural degradative cycle of these aromatic molecules.

>PRK10642 proline/glycine betaine transporter; Provisional

Probab=99.43  E-value=2.7e-11  Score=122.57  Aligned_cols=158  Identities=11%  Similarity=0.064  Sum_probs=104.6

Q ss_pred             CHHHHhhh-hHHHHHH-HHHHHhhhhHHHHHhcHHHHHH-HhCCChhHH--HHHHHHHHHhhhhhhhhhhhhhhhhhccC
Q 017795          128 TLPQALMK-ADFLLLF-FSLVLASGSGLTVIDNLGQICQ-SLGYADTSI--YVSMISIWNFLGRVGGGYFSEAIVRKFAY  202 (366)
Q Consensus       128 ~~~~~l~~-~~~~ll~-~~~~~~~~~~~~~~~~l~~i~~-~~g~~~~~~--~~sl~~i~~~~g~~~~G~lsD~~grr~~~  202 (366)
                      ++++.+++ ++.+++. ...++.....+.+..++|.+.+ .+|++....  ..+...++..++.+++|+++||+|||+.+
T Consensus       240 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~l~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~grr~~~  319 (490)
T PRK10642        240 SFKEIATKHWRSLLTCIGLVIATNVTYYMLLTYMPSYLSHNLHYSEDHGVLIIIAIMIGMLFVQPVMGLLSDRFGRRPFV  319 (490)
T ss_pred             CHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHH
Confidence            56666653 2333322 2223334455566778999885 578876544  55666778889999999999999997643


Q ss_pred             chhHHHHHHHHH-HHHHH--HHHH-hcchhHHHHHHHHHHHHhhhhhhhHHHHHHHhhCCCchhhHHHHHHhHhhhhHHH
Q 017795          203 PRPVAMAVAQVV-MAFAL--LYYA-IGWPGEIYVTTVLVGLSYGAHWAIVPAAASELFGLKSFGALYNFLTLASPAGSLI  278 (366)
Q Consensus       203 ~R~~~~~~~~~~-~~~~~--~l~~-~~~~~~l~~~~~l~G~~~g~~~~~~~~~~se~f~~~~~g~~~g~~~~~~~~G~~i  278 (366)
                            ..+.++ ...+.  +... ..+...++++.++.|++.+...+..+.+++|+||++.||+++++.+....+++.+
T Consensus       320 ------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~g~~~~~~~~~~p~~~Rg~~~g~~~~~~~~~g~~  393 (490)
T PRK10642        320 ------ILGSVALFVLAIPAFILINSNVIGLIFAGLLMLAVILNCFTGVMASTLPAMFPTHIRYSALAAAFNISVLVAGL  393 (490)
T ss_pred             ------HHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCccchHHHHHHHHHHHHHHHH
Confidence                  232222 11111  1122 2233455666777787777777778888899999999999999865556666674


Q ss_pred             hhhhHHHHHhhhhh
Q 017795          279 FSGVIASGIYDYYA  292 (366)
Q Consensus       279 ~gp~i~G~l~d~~~  292 (366)
                       +|.+.|++.+..+
T Consensus       394 -~p~i~g~l~~~~~  406 (490)
T PRK10642        394 -TPTLAAWLVESTQ  406 (490)
T ss_pred             -HHHHHHHHHHHhC
Confidence             8999999988654

>PRK03545 putative arabinose transporter; Provisional

Probab=99.43  E-value=1.1e-11  Score=121.25  Aligned_cols=179  Identities=13%  Similarity=0.135  Sum_probs=127.6

Q ss_pred             CHHHHhhhhHHHHHHHHHHHhhhhHHHHHhcHHHHHHH-hCCChhHH--HHHHHHHHHhhhhhhhhhhhhhhhhhccCch
Q 017795          128 TLPQALMKADFLLLFFSLVLASGSGLTVIDNLGQICQS-LGYADTSI--YVSMISIWNFLGRVGGGYFSEAIVRKFAYPR  204 (366)
Q Consensus       128 ~~~~~l~~~~~~ll~~~~~~~~~~~~~~~~~l~~i~~~-~g~~~~~~--~~sl~~i~~~~g~~~~G~lsD~~grr~~~~R  204 (366)
                      +.++.++++.+|..++..++..........+++++.++ .|++....  ..++..++..+++++.|+++||++||..   
T Consensus       197 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~g~s~~~~~~~~~~~~~~~~~g~~~~g~l~dr~~~~~~---  273 (390)
T PRK03545        197 SLPLLFRRPALVSLYLLTVVVVTAHFTAYSYIEPFVQQVAGLSENFATLLLLLFGGAGIIGSVLFSRLGNRHPSGFL---  273 (390)
T ss_pred             HHHHHHhCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHHHHHHHHHHHhhccchhHH---
Confidence            45678888888876655555444444445566666655 68876654  6777888999999999999999976532   


Q ss_pred             hHHHHHHHHHHHHHHHHH-H-hcchhHHHHHHHHHHHHhhhhhhhHHHHHHHhhCCCchhhHHHHHHhHhhhhHHHhhhh
Q 017795          205 PVAMAVAQVVMAFALLYY-A-IGWPGEIYVTTVLVGLSYGAHWAIVPAAASELFGLKSFGALYNFLTLASPAGSLIFSGV  282 (366)
Q Consensus       205 ~~~~~~~~~~~~~~~~l~-~-~~~~~~l~~~~~l~G~~~g~~~~~~~~~~se~f~~~~~g~~~g~~~~~~~~G~~i~gp~  282 (366)
                          ..+..+..++..++ . ..+...++++.++.|++.+.........+.+..+ +.++.++++.+....+|..+ ||.
T Consensus       274 ----~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~-~~~~~~~g~~~~~~~~g~~~-G~~  347 (390)
T PRK03545        274 ----LIAIALLLVCLLLLLPAANSEWHLSVLSIFWGIAIMCIGLAMQVKVLKLAP-DATDVAMALFSGIFNIGIGA-GAL  347 (390)
T ss_pred             ----HHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHHhcchHHHHHHHHHhCC-CcHHHHHHHHHHHHHHHHHH-HHH
Confidence                22223333333222 2 3334456667778888877665666667777765 68899999999999999996 999


Q ss_pred             HHHHHhhhhhhhhhhhhhhccCCCCCcccCCCCCCcccCCcchHHHHHHHHHHHHHHHHHHHHHH
Q 017795          283 IASGIYDYYAEKQAGLLWKYNGNMLPVSFRDQETPTCLGSICYSITCGIMAGLCIIAMVMSLIVV  347 (366)
Q Consensus       283 i~G~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~g~~~~~~~f~i~~~~~~~~~~~~~~~~  347 (366)
                      ++|.++|..+                                ++.+|++.+.+.+++++......
T Consensus       348 ~~G~~~~~~g--------------------------------~~~~~~~~~~~~~~~~~~~~~~~  380 (390)
T PRK03545        348 LGNQVSLHLG--------------------------------LSSIGYVGAALALAALVWSILIF  380 (390)
T ss_pred             HHHHHHhccC--------------------------------hhHHHHHHHHHHHHHHHHHHHHc
Confidence            9999999987                                99999999988877776655443

>PF06609 TRI12: Fungal trichothecene efflux pump (TRI12); InterPro: IPR010573 This family consists of several fungal specific trichothecene efflux pump proteins

Probab=99.43  E-value=3.5e-12  Score=130.25  Aligned_cols=176  Identities=17%  Similarity=0.100  Sum_probs=130.6

Q ss_pred             hhhHHHHHHHHHHHhhh----hHHHHHhcHHHHHHHhCCChhHH-HHHHHHHHHhhhhhhhhhhhhhhhhhccCchhHHH
Q 017795          134 MKADFLLLFFSLVLASG----SGLTVIDNLGQICQSLGYADTSI-YVSMISIWNFLGRVGGGYFSEAIVRKFAYPRPVAM  208 (366)
Q Consensus       134 ~~~~~~ll~~~~~~~~~----~~~~~~~~l~~i~~~~g~~~~~~-~~sl~~i~~~~g~~~~G~lsD~~grr~~~~R~~~~  208 (366)
                      ++++++..+.++.+...    ........++++.+++|-++... +.+...+...++.++.|.+||.+|||+..      
T Consensus        38 ~s~~~i~~~~~~~~~~~~~~~~~~~~a~~l~~I~~diG~~~~~~w~~~~~~l~~av~~~~~G~LSDlfGRr~~~------  111 (599)
T PF06609_consen   38 RSPRFIASFAAFSLAVIAAYFVLVLPASILPYINADIGGSDNWSWFSTAWTLASAVSFPFVGRLSDLFGRRYFF------  111 (599)
T ss_pred             eCHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHhcCCCccchHHHHHHHHHHHHHHHhhHHHHHHhcchHHH------
Confidence            45566655544333332    22233455788999999776655 77778888999999999999999998765      


Q ss_pred             HHHHHHHHHHHHHHH-hcchhHHHHHHHHHHHHhhhhhhhHHHHHHHhhCCCchhhHHHHHHhHhhhhHHHhhhhHHHHH
Q 017795          209 AVAQVVMAFALLYYA-IGWPGEIYVTTVLVGLSYGAHWAIVPAAASELFGLKSFGALYNFLTLASPAGSLIFSGVIASGI  287 (366)
Q Consensus       209 ~~~~~~~~~~~~l~~-~~~~~~l~~~~~l~G~~~g~~~~~~~~~~se~f~~~~~g~~~g~~~~~~~~G~~i~gp~i~G~l  287 (366)
                      .++.++..+|.++.+ ..+...+..+..+.|+|.|... +....++|+.+.|.|+..+++......+...+ ||.++..+
T Consensus       112 i~g~~l~vvG~Iv~atA~~~~~~iag~~l~GvgaG~~~-~~~~~isEl~p~k~R~~~~~~~~~~~i~~~~~-~~~ia~~~  189 (599)
T PF06609_consen  112 IIGSLLGVVGSIVCATAQNMNTFIAGMVLYGVGAGVQE-LAALAISELVPNKWRGLGLAIASIPFIITTWI-SPLIAQLF  189 (599)
T ss_pred             HHHHHHHHhHHHHhhcCCcHHHHHHHHHHHHHhhHHHH-HHHHHHHHhcccchhhhHhHHHHHHHHhhhcc-cHHHHHHh
Confidence            888999999998877 4566778888999999987765 45666899999999988887776654444443 66666655


Q ss_pred             hhhhhhhhhhhhhhccCCCCCcccCCCCCCcccCCcchHHHHHHHHHHHHHHHHHHHHHHhh
Q 017795          288 YDYYAEKQAGLLWKYNGNMLPVSFRDQETPTCLGSICYSITCGIMAGLCIIAMVMSLIVVHR  349 (366)
Q Consensus       288 ~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~g~~~~~~~f~i~~~~~~~~~~~~~~~~~~  349 (366)
                      ....                                +|||.|++.+++..+++++..+++++
T Consensus       190 ~~~~--------------------------------~WRw~~~~~~i~~~i~~vl~~~fY~P  219 (599)
T PF06609_consen  190 AAHS--------------------------------GWRWIFYIFIIWSGIALVLIFFFYFP  219 (599)
T ss_pred             ccCC--------------------------------CcchHHHHHHHHHHHHHHHHHHHhCC
Confidence            4433                                39999999999988888877777654

Many of the genes involved in trichothecene toxin biosynthesis in Fusarium sporotrichioides are present within a gene cluster. It has been suggested that TRI12 may play a role in F. sporotrichioides self-protection against trichothecenes [].

>PRK11195 lysophospholipid transporter LplT; Provisional

Probab=99.42  E-value=5.1e-12  Score=124.30  Aligned_cols=147  Identities=14%  Similarity=0.101  Sum_probs=116.6

Q ss_pred             hhHHHHHHHHHHHhhhhHHHHHhcHHHHHHHhCCChhHH--HHHHHHHHHhhhhhhhhhhhhhhhhhccCchhHHHHHHH
Q 017795          135 KADFLLLFFSLVLASGSGLTVIDNLGQICQSLGYADTSI--YVSMISIWNFLGRVGGGYFSEAIVRKFAYPRPVAMAVAQ  212 (366)
Q Consensus       135 ~~~~~ll~~~~~~~~~~~~~~~~~l~~i~~~~g~~~~~~--~~sl~~i~~~~g~~~~G~lsD~~grr~~~~R~~~~~~~~  212 (366)
                      +++||.++++.++.......+...++.+.++++.+....  ..+.+.+...++.+++|+++||++||+.+      ..+.
T Consensus         2 ~~~f~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~l~~~l~~~~~G~laDr~grr~vl------~~~~   75 (393)
T PRK11195          2 SKGFYAIMAAQFFSALADNALLFAAIALLKELHYPDWSQPLLQMFFVLAYIVLAPFVGAFADSFPKGRVM------FIAN   75 (393)
T ss_pred             CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHHHHhhhhHhhhccCCchhh------HHHH
Confidence            346788888887777655556666777788888876554  67788889999999999999999998876      5555


Q ss_pred             HHHHHHHHHHHhcchhHHHHHHHHHHHHhhhhhhhHHHHHHHhhCCCchhhHHHHHHhHhhhhHHHhhhhHHHHHhhh
Q 017795          213 VVMAFALLYYAIGWPGEIYVTTVLVGLSYGAHWAIVPAAASELFGLKSFGALYNFLTLASPAGSLIFSGVIASGIYDY  290 (366)
Q Consensus       213 ~~~~~~~~l~~~~~~~~l~~~~~l~G~~~g~~~~~~~~~~se~f~~~~~g~~~g~~~~~~~~G~~i~gp~i~G~l~d~  290 (366)
                      ++.+++.+++.....  .++.+++.|++.+...+...++++|++++++++.+.++..+...+|..+ ||.++|.+.+.
T Consensus        76 ~~~~~~~~~~~~~~~--~~~~r~l~G~~~a~~~pa~~a~i~~~~~~~~~~~a~~~~~~~~~~~~~~-Gp~lgG~l~~~  150 (393)
T PRK11195         76 GIKLLGCLLMLFGIH--PLLAYGLVGIGAAAYSPAKYGILTELLPGEKLVKANGWMEGSTIAAILL-GTVLGGALADP  150 (393)
T ss_pred             HHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHH
Confidence            555554444332211  2667788999999999999999999999999999999999999999996 99999999884

>PRK11273 glpT sn-glycerol-3-phosphate transporter; Provisional

Probab=99.42  E-value=1.1e-11  Score=124.17  Aligned_cols=156  Identities=13%  Similarity=0.163  Sum_probs=115.6

Q ss_pred             HHhcHHHHHHHhCCChhHH--HHHHHHHHHhhhhhhhhhhhhhhhhhccCchhHHHHHHHHHHHHHHHHHHh-----cch
Q 017795          155 VIDNLGQICQSLGYADTSI--YVSMISIWNFLGRVGGGYFSEAIVRKFAYPRPVAMAVAQVVMAFALLYYAI-----GWP  227 (366)
Q Consensus       155 ~~~~l~~i~~~~g~~~~~~--~~sl~~i~~~~g~~~~G~lsD~~grr~~~~R~~~~~~~~~~~~~~~~l~~~-----~~~  227 (366)
                      +...+|.+.++ |++..+.  ..+...++..++.+++|+++||+|||+.+      ..+.++.+++.++++.     .+.
T Consensus        48 ~~~~~p~l~~~-g~s~~~~g~~~~~~~i~~~~~~~~~G~l~Dr~g~k~~l------~~~~~~~~i~~~~~~~~~~~~~~~  120 (452)
T PRK11273         48 FALAMPYLVEQ-GFSRGDLGFALSGISIAYGFSKFIMGSVSDRSNPRVFL------PAGLILAAAVMLFMGFVPWATSSI  120 (452)
T ss_pred             HHHhhHHHHHc-CCCHHHHHHHHHHHHHHHHHHHhhhhhhhhccCCchhH------HHHHHHHHHHHHHHHhhhcccccH
Confidence            44567777766 9887766  77888899999999999999999998755      5566666655555442     133


Q ss_pred             hHHHHHHHHHHHHhhhhhhhHHHHHHHhhCCCchhhHHHHHHhHhhhhHHHhhhhHHHHHhhhhhhhhhhhhhhccCCCC
Q 017795          228 GEIYVTTVLVGLSYGAHWAIVPAAASELFGLKSFGALYNFLTLASPAGSLIFSGVIASGIYDYYAEKQAGLLWKYNGNML  307 (366)
Q Consensus       228 ~~l~~~~~l~G~~~g~~~~~~~~~~se~f~~~~~g~~~g~~~~~~~~G~~i~gp~i~G~l~d~~~~~~~~~~~~~~~~~~  307 (366)
                      ..+++..++.|++.+..++.....+.+.+++++++.+.++.+.+..+|+.+.+|.+...+....+               
T Consensus       121 ~~~~~~~~l~gi~~g~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~l~~~~~~~~~g---------------  185 (452)
T PRK11273        121 AVMFVLLFLCGWFQGMGWPPCGRTMVHWWSQKERGGIVSVWNCAHNVGGGLPPLLFLLGMAWFND---------------  185 (452)
T ss_pred             HHHHHHHHHHHHHHhccchHHHHHHHHhCChHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhcc---------------
Confidence            45667778889988887777777889999999999999999999999876445554333332223               


Q ss_pred             CcccCCCCCCcccCCcchHHHHHHHHHHHHHHHHHHHHHHhh
Q 017795          308 PVSFRDQETPTCLGSICYSITCGIMAGLCIIAMVMSLIVVHR  349 (366)
Q Consensus       308 ~~~~~~~~~~~c~g~~~~~~~f~i~~~~~~~~~~~~~~~~~~  349 (366)
                                       |++.|++.++++++..++.+++.++
T Consensus       186 -----------------w~~~f~i~~~~~~~~~~l~~~~~~~  210 (452)
T PRK11273        186 -----------------WHAALYMPAFAAILVALFAFAMMRD  210 (452)
T ss_pred             -----------------HHHHHHHHHHHHHHHHHHHHHHccC
Confidence                             9999999988777766666555544

>PRK09705 cynX putative cyanate transporter; Provisional

Probab=99.42  E-value=8e-12  Score=122.81  Aligned_cols=130  Identities=14%  Similarity=0.143  Sum_probs=112.2

Q ss_pred             HHHhcHHHHHHHhCCChhHH--HHHHHHHHHhhhhhhhhhhhhhhhhhccCchhHHHHHHHHHHHHHHHHHH-hcchhHH
Q 017795          154 TVIDNLGQICQSLGYADTSI--YVSMISIWNFLGRVGGGYFSEAIVRKFAYPRPVAMAVAQVVMAFALLYYA-IGWPGEI  230 (366)
Q Consensus       154 ~~~~~l~~i~~~~g~~~~~~--~~sl~~i~~~~g~~~~G~lsD~~grr~~~~R~~~~~~~~~~~~~~~~l~~-~~~~~~l  230 (366)
                      .....+|.+.+++|.+..+.  ..+.+.++..++.+..|+++||+|||+.+      ..+..+.+++.++.+ ..+...+
T Consensus        27 ~~~~~lp~i~~~~~~s~~~~g~~~s~~~~~~~l~~~~~g~l~dr~G~r~~l------~~~~~l~~~~~~~~~~a~~~~~l  100 (393)
T PRK09705         27 SVGPLLPQLRQASGMSFSVAALLTALPVVTMGGLALAGSWLHQHVSERRSV------AISLLLIAVGALMRELYPQSALL  100 (393)
T ss_pred             ccchhHHHHHHHhCCCHHHHHHHHHHHHHHHHHHhhhhHHHHHHhCchHHH------HHHHHHHHHHHHHHHHCcchHHH
Confidence            34567899999999988776  88888899999999999999999998876      788888888888776 4566678


Q ss_pred             HHHHHHHHHHhhhhhhhHHHHHHHhhCCCchhhHHHHHHhHhhhhHHHhhhhHHHHHhhhh
Q 017795          231 YVTTVLVGLSYGAHWAIVPAAASELFGLKSFGALYNFLTLASPAGSLIFSGVIASGIYDYY  291 (366)
Q Consensus       231 ~~~~~l~G~~~g~~~~~~~~~~se~f~~~~~g~~~g~~~~~~~~G~~i~gp~i~G~l~d~~  291 (366)
                      ++++++.|++.+...+....++.+.|+ ++++.+.++...+..+|..+ |+.+++++.+..
T Consensus       101 l~~r~l~Gig~~~~~~~~~~~~~~~~~-~~~~~~~g~~~~~~~~g~~~-g~~~~~~l~~~~  159 (393)
T PRK09705        101 LSSALLGGVGIGIIQAVMPSVIKRRFQ-QRTPLVMGLWSAALMGGGGL-GAAITPWLVQHS  159 (393)
T ss_pred             HHHHHHHHhHHHHHhhhhhHHHHHHcc-ccchhHHHHHHHHHHHHHHH-HHHHHHHHHHhc
Confidence            889999999999988888889999996 78999999999998899996 899999888765

>PRK10489 enterobactin exporter EntS; Provisional

Probab=99.42  E-value=5.6e-12  Score=124.58  Aligned_cols=174  Identities=16%  Similarity=0.089  Sum_probs=130.4

Q ss_pred             HhhhhHHHHHHHHHHHhhhhHHHHHhcHHHHHHHhCCChhHH--HHHHHHHHHhhhhhhhhhhhhhhhhhccCchhHHHH
Q 017795          132 ALMKADFLLLFFSLVLASGSGLTVIDNLGQICQSLGYADTSI--YVSMISIWNFLGRVGGGYFSEAIVRKFAYPRPVAMA  209 (366)
Q Consensus       132 ~l~~~~~~ll~~~~~~~~~~~~~~~~~l~~i~~~~g~~~~~~--~~sl~~i~~~~g~~~~G~lsD~~grr~~~~R~~~~~  209 (366)
                      ..++++++.++...++...........+|.+.++++.+..+.  ..+...+...++.++.|+++||++||+..      .
T Consensus        13 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~~~~~l~~~~~~~~~G~l~dr~g~~~~l------~   86 (417)
T PRK10489         13 LKTHPAFRAVFIARFISIFGLGLLGVAVPVQIQMMTGSTLQVGLSVTLTGGAMFIGLMVGGVLADRYDRKKLI------L   86 (417)
T ss_pred             HHhCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHhhHHHhhhcCCceEE------E
Confidence            335666776666666665555566677888888888877655  78888888999999999999999998876      3


Q ss_pred             HHHHHHHHHHHHHH------hcchhHHHHHHHHHHHHhhhhhhhHHHHHHHhhCCCchhhHHHHHHhHhhhhHHHhhhhH
Q 017795          210 VAQVVMAFALLYYA------IGWPGEIYVTTVLVGLSYGAHWAIVPAAASELFGLKSFGALYNFLTLASPAGSLIFSGVI  283 (366)
Q Consensus       210 ~~~~~~~~~~~l~~------~~~~~~l~~~~~l~G~~~g~~~~~~~~~~se~f~~~~~g~~~g~~~~~~~~G~~i~gp~i  283 (366)
                      .+.++.+++.+.+.      ..+...+++..++.|++.+...+...+.+++.+++++++++.++.++...+|..+ ||.+
T Consensus        87 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~-g~~l  165 (417)
T PRK10489         87 LARGTCGLGFIGLALNAFLPEPSLLAIYLLGLWDGFFGSLGVTALLAATPALVGRENLMQAGAITMLTVRLGSVI-SPAL  165 (417)
T ss_pred             ehHHHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHHHHHHHhhhhhhccCHHHHHHHHHHHHHHHhHHHHh-HHHH
Confidence            34443343333221      1233456677788888877777777788999999999999999999999999996 9999


Q ss_pred             HHHHhhhhhhhhhhhhhhccCCCCCcccCCCCCCcccCCcchHHHHHHHHHHHHHHHHHHH
Q 017795          284 ASGIYDYYAEKQAGLLWKYNGNMLPVSFRDQETPTCLGSICYSITCGIMAGLCIIAMVMSL  344 (366)
Q Consensus       284 ~G~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~g~~~~~~~f~i~~~~~~~~~~~~~  344 (366)
                      +|.+.+..+                                |++.|++.++..+++.++.+
T Consensus       166 ~g~l~~~~~--------------------------------~~~~~~~~~~~~~~~~~~~~  194 (417)
T PRK10489        166 GGLLIAAGG--------------------------------VAWNYGLAAAGTFITLLPLL  194 (417)
T ss_pred             HHHHHHHHh--------------------------------hHHHHHHHHHHHHHHHHHHH
Confidence            999998776                                99999887776666554433

>PRK09556 uhpT sugar phosphate antiporter; Reviewed

Probab=99.42  E-value=3.5e-12  Score=128.20  Aligned_cols=168  Identities=13%  Similarity=0.053  Sum_probs=124.3

Q ss_pred             HHHHHhhhhHHHHHhcHHHHHHHhCCChhHH--HHHHHHHHHhhhhhhhhhhhhhhhhhccCchhHHHHHHHHHHHHHHH
Q 017795          143 FSLVLASGSGLTVIDNLGQICQSLGYADTSI--YVSMISIWNFLGRVGGGYFSEAIVRKFAYPRPVAMAVAQVVMAFALL  220 (366)
Q Consensus       143 ~~~~~~~~~~~~~~~~l~~i~~~~g~~~~~~--~~sl~~i~~~~g~~~~G~lsD~~grr~~~~R~~~~~~~~~~~~~~~~  220 (366)
                      +.+++.+..-..+...+|.+.+++|.+..+.  ..+.+.++..++.+++|+++||+|+|+.+      .++.++.+++.+
T Consensus        36 ~~~~~~y~~r~~~~~~~~~i~~~~~~s~~~~g~~~s~~~~~~~~~~~~~G~l~Dr~g~r~~l------~~~~~~~~~~~~  109 (467)
T PRK09556         36 IGYLTMYLIRKNFKAAQNDMISTYGLSTTELGMIGLGFSITYGVGKTLVGYYADGKNTKQFL------PFLLILSAICML  109 (467)
T ss_pred             HHHHHHHHHhcChhhhhHHHHHhcCCCHHHHHHHHHHHHHHHHHHHhhhhhHhhccCccchH------HHHHHHHHHHHH
Confidence            3333333334445566889999999988776  78888889999999999999999998765      444444333333


Q ss_pred             HHH------hcchhHHHHHHHHHHHHhhhhhhhHHHHHHHhhCCCchhhHHHHHHhHhhhhHHHhhhhHHHHHhhhhhhh
Q 017795          221 YYA------IGWPGEIYVTTVLVGLSYGAHWAIVPAAASELFGLKSFGALYNFLTLASPAGSLIFSGVIASGIYDYYAEK  294 (366)
Q Consensus       221 l~~------~~~~~~l~~~~~l~G~~~g~~~~~~~~~~se~f~~~~~g~~~g~~~~~~~~G~~i~gp~i~G~l~d~~~~~  294 (366)
                      +++      ..+...+++.+++.|++.+..++....++++.|+++++|.+.|+...+.++|..+ ++.+..++.+.... 
T Consensus       110 ~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~rg~a~gi~~~~~~lG~~l-~~~i~~~~~~~~~~-  187 (467)
T PRK09556        110 GFGASLGSGSVSLGLMIALWALSGFFQSTGGPCSYSTITRWTPRRKRGRFLGFWNISHNLGGAG-AGGVALWGANYFFD-  187 (467)
T ss_pred             HHHHHHhcccchHHHHHHHHHHHHHHHhccchHHHHHHHHHcCccceeeeEEeeecccchhhhH-HHHHHHHHHHhhcc-
Confidence            322      2455677888999999998888888899999999999999999999999999996 88887776654310 


Q ss_pred             hhhhhhhccCCCCCcccCCCCCCcccCCcchHHHHHHHHHHHHHHHHHHHHH
Q 017795          295 QAGLLWKYNGNMLPVSFRDQETPTCLGSICYSITCGIMAGLCIIAMVMSLIV  346 (366)
Q Consensus       295 ~~~~~~~~~~~~~~~~~~~~~~~~c~g~~~~~~~f~i~~~~~~~~~~~~~~~  346 (366)
                                                  .+|+..|.+.+++.++.+++.+++
T Consensus       188 ----------------------------~~~~~~f~~~g~~~~~~~i~~~~~  211 (467)
T PRK09556        188 ----------------------------GHVIGMFIFPSIIALIIGFIGLRY  211 (467)
T ss_pred             ----------------------------CcchhHHHHHHHHHHHHHHHHHHh
Confidence                                        028888888777766655555444

>COG2271 UhpC Sugar phosphate permease [Carbohydrate transport and metabolism]

Probab=99.41  E-value=3e-12  Score=123.59  Aligned_cols=177  Identities=15%  Similarity=0.130  Sum_probs=146.5

Q ss_pred             hhhHHHHHHHHHHHhhhhHHHHHhcHHHHHHHhCCChhHH--HHHHHHHHHhhhhhhhhhhhhhhhhhccCchhHHHHHH
Q 017795          134 MKADFLLLFFSLVLASGSGLTVIDNLGQICQSLGYADTSI--YVSMISIWNFLGRVGGGYFSEAIVRKFAYPRPVAMAVA  211 (366)
Q Consensus       134 ~~~~~~ll~~~~~~~~~~~~~~~~~l~~i~~~~g~~~~~~--~~sl~~i~~~~g~~~~G~lsD~~grr~~~~R~~~~~~~  211 (366)
                      +...|..+++.+.+.+..--.+....|.+.++.|++.++.  ..+.+++...++..+.|.+|||.+.|+-+      .++
T Consensus        27 r~qif~~~fiGYa~fYl~RknF~~a~p~l~e~~~lsk~~lG~i~s~f~i~YG~sKf~~G~~sDr~npr~fm------~~g  100 (448)
T COG2271          27 RIQIFLSIFIGYAAFYLTRKNFNLAMPALIEDGGLSKTQLGILGSAFSITYGVSKFVMGVLSDRSNPRYFM------AFG  100 (448)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhHhhccHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHhhhhcccCCCceee------hHH
Confidence            3334555666666666666677788999999999999887  89999999999999999999999887765      888


Q ss_pred             HHHHHHHHHHHHhc-chhHHHHHHHHHHHHhhhhhhhHHHHHHHhhCCCchhhHHHHHHhHhhhhHHHhhhhHH--HHHh
Q 017795          212 QVVMAFALLYYAIG-WPGEIYVTTVLVGLSYGAHWAIVPAAASELFGLKSFGALYNFLTLASPAGSLIFSGVIA--SGIY  288 (366)
Q Consensus       212 ~~~~~~~~~l~~~~-~~~~l~~~~~l~G~~~g~~~~~~~~~~se~f~~~~~g~~~g~~~~~~~~G~~i~gp~i~--G~l~  288 (366)
                      +++.++..+++.+. +...+.+..++-|+.-|.-|+....++...|+.++||+..++.+++-++|+.+ -|++.  |++.
T Consensus       101 Lilsai~nil~Gfs~s~~~~~~l~~lng~fQg~Gwpp~~~~i~~Wfsr~eRG~~~siWn~shNiGGal-~~~~~~la~~~  179 (448)
T COG2271         101 LILSAIVNILFGFSPSLFLFAVLWVLNGWFQGMGWPPCARTITHWFSRKERGTWWSIWNTSHNIGGAL-APLVALLAFFA  179 (448)
T ss_pred             HHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHcCccccCceEEEehhhhhcccch-HHHHHHHHHHH
Confidence            88888888888744 44456677778899999889999999999999999999999999999999997 68888  8887


Q ss_pred             hhhhhhhhhhhhhccCCCCCcccCCCCCCcccCCcchHHHHHHHHHHHHHHHHHHHHHHhh
Q 017795          289 DYYAEKQAGLLWKYNGNMLPVSFRDQETPTCLGSICYSITCGIMAGLCIIAMVMSLIVVHR  349 (366)
Q Consensus       289 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~g~~~~~~~f~i~~~~~~~~~~~~~~~~~~  349 (366)
                      ++.+                                |+.+|++-++++++..++.+...+.
T Consensus       180 ~~~~--------------------------------w~~~f~~pgiiaiival~~~~~~rd  208 (448)
T COG2271         180 FHGG--------------------------------WRAAFYFPGIIAIIVALILLFLLRD  208 (448)
T ss_pred             hccc--------------------------------hhHHHHHHHHHHHHHHHHHHHHhCC
Confidence            7665                                9999999998888766666655543

>KOG2532 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism]

Probab=99.41  E-value=4.7e-12  Score=126.85  Aligned_cols=192  Identities=12%  Similarity=0.086  Sum_probs=143.4

Q ss_pred             CCCCHHHHhhhhHHHHHHHHHHHhhhhHHHHHhcHHHHHHH-hCCChhHH--HHHHHHHHHhhhhhhhhhhhhhhhhhcc
Q 017795          125 EDFTLPQALMKADFLLLFFSLVLASGSGLTVIDNLGQICQS-LGYADTSI--YVSMISIWNFLGRVGGGYFSEAIVRKFA  201 (366)
Q Consensus       125 ~~~~~~~~l~~~~~~ll~~~~~~~~~~~~~~~~~l~~i~~~-~g~~~~~~--~~sl~~i~~~~g~~~~G~lsD~~grr~~  201 (366)
                      .+.++++.++++.+|.++++.++.......+..++|.++++ +|++-.+.  +.+++.+...+..+++|.++||+-+| .
T Consensus       247 ~~vP~~~i~ts~~vwai~~~~f~~~~~~~~l~~y~PtY~~~VL~f~v~~~G~~salP~l~~~~~k~~~g~lsD~l~~~-~  325 (466)
T KOG2532|consen  247 PPVPYKAILTSPPVWAIWISAFGGNWGFYLLLTYLPTYLKEVLGFDVRETGFLSALPFLAMAIVKFVAGQLSDRLTFR-I  325 (466)
T ss_pred             CCCCHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhCCChhhhhHHHHHHHHHHHHHHHHHHHHHHHHhhc-c
Confidence            46689999999999999999999999999999999999976 78876655  88899999999999999999999776 3


Q ss_pred             C----chhHHHHHHHHHHHHHHHHHHhcc--hhHHHHHHHHHHHHhhhhhhhHHHHHHHhhCCCchhhHHHHHHhHhhhh
Q 017795          202 Y----PRPVAMAVAQVVMAFALLYYAIGW--PGEIYVTTVLVGLSYGAHWAIVPAAASELFGLKSFGALYNFLTLASPAG  275 (366)
Q Consensus       202 ~----~R~~~~~~~~~~~~~~~~l~~~~~--~~~l~~~~~l~G~~~g~~~~~~~~~~se~f~~~~~g~~~g~~~~~~~~G  275 (366)
                      +    .|+.+-.+++...++.++.++...  ...+.+..+.++.+..+..............+++.+..+|+.+....+.
T Consensus       326 ls~t~~rkifn~i~~~~~ai~l~~l~~~~~~~~~~a~~~l~~~~~~~g~~~~Gf~~~~~~~apq~a~~l~g~~~~~~~~~  405 (466)
T KOG2532|consen  326 LSETTVRKIFNTIAFGGPAVFLLVLAFTSDEHRLLAVILLTIAIGLSGFNISGFYKNHQDIAPQHAGFVMGIINFVGALA  405 (466)
T ss_pred             CchHhHHHHHHhHHHHHHHHHHHeeeecCCCcchHHHHHHHHHHHHcccchhhhHhhhhhccchHHHHHHHHHHHHHHHH
Confidence            3    377788888888888777766322  2212222222223332222222222222227889999999999999999


Q ss_pred             HHHhhhhHHHHHhhhhhhhhhhhhhhccCCCCCcccCCCCCCcccCCcchHHHHHHHHHHHHHHHHHHHHHH
Q 017795          276 SLIFSGVIASGIYDYYAEKQAGLLWKYNGNMLPVSFRDQETPTCLGSICYSITCGIMAGLCIIAMVMSLIVV  347 (366)
Q Consensus       276 ~~i~gp~i~G~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~g~~~~~~~f~i~~~~~~~~~~~~~~~~  347 (366)
                      +++ +|.+.|.+..... +.                            .|+.+|++.+++.+++.+...++.
T Consensus       406 ~~~-~P~~vg~~~~~~t-~~----------------------------eW~~VF~i~a~i~~~~~i~f~~f~  447 (466)
T KOG2532|consen  406 GFI-APLLVGIIVTDNT-RE----------------------------EWRIVFLIAAGILIVGNIIFLFFG  447 (466)
T ss_pred             HHH-HHHheeeEeCCCC-HH----------------------------HHHHHHHHHHHHHHHhchheeEee
Confidence            996 9999999984211 11                            299999999999998886665554

>PRK12382 putative transporter; Provisional

Probab=99.40  E-value=1.1e-11  Score=121.44  Aligned_cols=152  Identities=13%  Similarity=0.071  Sum_probs=114.5

Q ss_pred             hhhHHHHHHHHHHHhhhhHHHHHhcHHHH-HHHhCCChhHH--HHHHHHHHHhhhhhhhhhhhhhhhhhccCchhHHHHH
Q 017795          134 MKADFLLLFFSLVLASGSGLTVIDNLGQI-CQSLGYADTSI--YVSMISIWNFLGRVGGGYFSEAIVRKFAYPRPVAMAV  210 (366)
Q Consensus       134 ~~~~~~ll~~~~~~~~~~~~~~~~~l~~i-~~~~g~~~~~~--~~sl~~i~~~~g~~~~G~lsD~~grr~~~~R~~~~~~  210 (366)
                      .+..++.++++.++...........+|.+ .+++|.+....  ..+...+...++++.+|+++||+|||+.+      ..
T Consensus        13 ~~~~~~~~~~~~~~~~~~~~~~~p~l~~~l~~~lg~s~~~~g~~~s~~~~~~~i~~~~~G~l~Dr~g~r~~l------~~   86 (392)
T PRK12382         13 ANFSLFRIAFAVFLTYMTVGLPLPVIPLFVHHDLGFGNTMVGIAVGIQFLATVLTRGYAGRLADQYGAKRSA------LQ   86 (392)
T ss_pred             ccccHHHHHHHHHHHHHHHHHHhhhhhHHHHHhcCCcHHHHHHHHHHHHHHHHHHhhhhhHHHHhhcchHHH------HH
Confidence            44456666666666655555566677765 56899988776  88899999999999999999999998755      44


Q ss_pred             HHHHHHHHHH---HHH------hcchhHHHHHHHHHHHHhhhhhhhHHHHHHHhhCCCchhhHHHHHHhHhhhhHHHhhh
Q 017795          211 AQVVMAFALL---YYA------IGWPGEIYVTTVLVGLSYGAHWAIVPAAASELFGLKSFGALYNFLTLASPAGSLIFSG  281 (366)
Q Consensus       211 ~~~~~~~~~~---l~~------~~~~~~l~~~~~l~G~~~g~~~~~~~~~~se~f~~~~~g~~~g~~~~~~~~G~~i~gp  281 (366)
                      +.+...++.+   +..      ..+...+++++++.|++.+...+...+++.|.+++++|+.+.++...+..+|..+ ||
T Consensus        87 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~~~~~~~~~~r~~a~~~~~~~~~~g~~~-g~  165 (392)
T PRK12382         87 GMLACGLAGLAYLLAAILPVSAPFKFALLVVGRLILGFGESQLLTGALTWGLGLVGPKHSGKVMSWNGMAMYGALAA-GA  165 (392)
T ss_pred             HHHHHHHHHHHHHhhhccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCccccchhhhHHHHHHHHHHHH-HH
Confidence            3333333222   111      1233467788899999988877777788899999999999999999988888886 99


Q ss_pred             hHHHHHhhhhh
Q 017795          282 VIASGIYDYYA  292 (366)
Q Consensus       282 ~i~G~l~d~~~  292 (366)
                      .+++++.+..+
T Consensus       166 ~~~~~l~~~~g  176 (392)
T PRK12382        166 PLGLLLHSHFG  176 (392)
T ss_pred             HHHHHHHhccC
Confidence            99999988766

>TIGR00903 2A0129 major facilitator 4 family protein

Probab=99.39  E-value=2.2e-11  Score=118.95  Aligned_cols=176  Identities=16%  Similarity=0.103  Sum_probs=125.6

Q ss_pred             HHHHhhhhHHHHHHHHHHHhhhhHHHHHhcHHHHHHHhCCChhHH-HHHHHHHHHhhhhhhhhhhhhhhhhhccCchhHH
Q 017795          129 LPQALMKADFLLLFFSLVLASGSGLTVIDNLGQICQSLGYADTSI-YVSMISIWNFLGRVGGGYFSEAIVRKFAYPRPVA  207 (366)
Q Consensus       129 ~~~~l~~~~~~ll~~~~~~~~~~~~~~~~~l~~i~~~~g~~~~~~-~~sl~~i~~~~g~~~~G~lsD~~grr~~~~R~~~  207 (366)
                      +++.++++.+|.+.+.+++.....+.+.+|+|++.++.|++.... ..++..+   .|.+..++++||..||..  |...
T Consensus       185 ~~~ll~~~~~~~~~~~~~~~~~~~~~~~~wlp~~L~~~g~s~~~~~~~~l~~~---~g~~g~~~~~d~~~r~~~--r~~~  259 (368)
T TIGR00903       185 FGALAGRKDLWIIGAILGFGVALFDNLAIWLEAALRPAGLEDIAGDAVALAIL---AGLIGVAVIPDRVARAGL--RSIY  259 (368)
T ss_pred             HHHHHcChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCChHHHHHHHHHHH---HHHHHHHHhhHHhhhhhh--HHHH
Confidence            567889999999999999998888899999999999888876422 4444444   344556899999977532  2222


Q ss_pred             HHHHHHHHHHHHHHHHh-cchhHHHHHHHHHHHHhhhhhhhHHHHHHHhhCCCchhhHHHHHHhHhhhhHHHhhhhHHHH
Q 017795          208 MAVAQVVMAFALLYYAI-GWPGEIYVTTVLVGLSYGAHWAIVPAAASELFGLKSFGALYNFLTLASPAGSLIFSGVIASG  286 (366)
Q Consensus       208 ~~~~~~~~~~~~~l~~~-~~~~~l~~~~~l~G~~~g~~~~~~~~~~se~f~~~~~g~~~g~~~~~~~~G~~i~gp~i~G~  286 (366)
                      .....++++++..++.. .++....+...+.+++....++..+++.+|.+|++.||++.|+.+..+.+|+.+ +|.+.|.
T Consensus       260 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~p~~~rgt~~G~~~~~g~~~~~~-~~~~~~~  338 (368)
T TIGR00903       260 IRAAALLIAAFFLALAFELNRLALFAFIGIAGLLMLPAYAIIMDWIGKFCDKELHGKAAGAIGFTSRAISVA-LALAAML  338 (368)
T ss_pred             HHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHhhhhhHHHHHHHHHHhcchhhcCcccchhhHHHHHHHHH-HHHHHHH
Confidence            23233333444333332 223333445555667677777778889999999999999999999999999986 8988887


Q ss_pred             HhhhhhhhhhhhhhhccCCCCCcccCCCCCCcccCCcchHHHHHHHHHHHHHHHHHHH
Q 017795          287 IYDYYAEKQAGLLWKYNGNMLPVSFRDQETPTCLGSICYSITCGIMAGLCIIAMVMSL  344 (366)
Q Consensus       287 l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~g~~~~~~~f~i~~~~~~~~~~~~~  344 (366)
                      +..  +                                ....|.+.++.++++++..+
T Consensus       339 ~~~--~--------------------------------~~~~f~~~~~~~~i~~~~~~  362 (368)
T TIGR00903       339 FIS--S--------------------------------AEAYFTFLAILITIAFAIAL  362 (368)
T ss_pred             Hhc--C--------------------------------HHHHHHHHHHHHHHHHHHHH
Confidence            773  3                                66678888877777666643

This family of proteins are uncharacterized proteins from archaea. This family includes proteins from Archaeoglobus fulgidus and Aeropyrum pernix.

>TIGR00879 SP MFS transporter, sugar porter (SP) family

Probab=99.39  E-value=1e-11  Score=122.98  Aligned_cols=126  Identities=21%  Similarity=0.265  Sum_probs=98.9

Q ss_pred             HHHHHhcHHHHHHHhCCC--------hhHH--HHHHHHHHHhhhhhhhhhhhhhhhhhccCchhHHHHHHHHHHHHHHHH
Q 017795          152 GLTVIDNLGQICQSLGYA--------DTSI--YVSMISIWNFLGRVGGGYFSEAIVRKFAYPRPVAMAVAQVVMAFALLY  221 (366)
Q Consensus       152 ~~~~~~~l~~i~~~~g~~--------~~~~--~~sl~~i~~~~g~~~~G~lsD~~grr~~~~R~~~~~~~~~~~~~~~~l  221 (366)
                      ...+...++.+..+++++        ....  ..+++.++..++.+++|+++||+|||+.+      .++.++..++.++
T Consensus        44 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~l~d~~grr~~~------~~~~~~~~~~~~~  117 (481)
T TIGR00879        44 TGVIGGALALPAFEFKFTSANSDSYSSSLWGLVVSIFLVGGFIGALFAGWLSDRFGRKKSL------LIIALLFVIGAIL  117 (481)
T ss_pred             cchhhhhhhcHHHHHhcCCcccCCCChhHHHHHHHHHHHHHHHHHHHhhHhhhhhhhHHHH------HHHHHHHHHHHHH
Confidence            334555667777776665        4443  78888999999999999999999997655      5555555555555


Q ss_pred             HH-hcc---hhHHHHHHHHHHHHhhhhhhhHHHHHHHhhCCCchhhHHHHHHhHhhhhHHHhhhhHH
Q 017795          222 YA-IGW---PGEIYVTTVLVGLSYGAHWAIVPAAASELFGLKSFGALYNFLTLASPAGSLIFSGVIA  284 (366)
Q Consensus       222 ~~-~~~---~~~l~~~~~l~G~~~g~~~~~~~~~~se~f~~~~~g~~~g~~~~~~~~G~~i~gp~i~  284 (366)
                      .. ..+   ...+++++++.|++.+..++...++++|.+++++|+.+.++.+....+|..+ +|.+.
T Consensus       118 ~~~~~~~~~~~~~~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~-~~~~~  183 (481)
T TIGR00879       118 MGLAAFALSVEMLIVGRVLLGIGVGIASALVPMYLSEIAPKALRGALTSLYQLAITFGILV-AYGFG  183 (481)
T ss_pred             HHHhccccchHHHHHHHHHHHhhhhHHHhHHHHHHHccCChhhhhhhhhHHHHHHHHHHHH-HHHHH
Confidence            43 222   2367889999999999999999999999999999999999999999999996 88887

This model represent the sugar porter subfamily of the major facilitator superfamily (pfam00083)

>TIGR00899 2A0120 sugar efflux transporter

Probab=99.39  E-value=2.5e-11  Score=117.35  Aligned_cols=176  Identities=17%  Similarity=0.133  Sum_probs=123.1

Q ss_pred             HHHHhhhhHHHHHHHHHHHhhhhHHHHHhcHHHHH-HHhCCChhHH--HHHHHHHHHhhhhhhhhhhhhhhhhhccCchh
Q 017795          129 LPQALMKADFLLLFFSLVLASGSGLTVIDNLGQIC-QSLGYADTSI--YVSMISIWNFLGRVGGGYFSEAIVRKFAYPRP  205 (366)
Q Consensus       129 ~~~~l~~~~~~ll~~~~~~~~~~~~~~~~~l~~i~-~~~g~~~~~~--~~sl~~i~~~~g~~~~G~lsD~~grr~~~~R~  205 (366)
                      .++.+++++++.++...++.......+..++|.+. +++|.+....  ..+...+....++++.|+++||++||+..   
T Consensus       192 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~g~l~~r~g~~~~~---  268 (375)
T TIGR00899       192 VRGLLASRDTRLLFVACTLMWGCNILYIINMPLLIIHELGLPDKLAGLMMGTAAGLEIPFMLLAGYLIKRFGKRRLM---  268 (375)
T ss_pred             hhhhhcCcchHHHHHHHHHHHHHHHHHHhhhHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHhHHHHHHHhcchhHH---
Confidence            44466777777666555554444444555677765 5678877655  44455556677889999999999987543   


Q ss_pred             HHHHHHHHHHHHHHHHHH-hcchhHHHHHHHHHHHHhhhhhhhHHHHHHHhhCCCchhhHHHHHHhHhhhhHHHhhhhHH
Q 017795          206 VAMAVAQVVMAFALLYYA-IGWPGEIYVTTVLVGLSYGAHWAIVPAAASELFGLKSFGALYNFLTLASPAGSLIFSGVIA  284 (366)
Q Consensus       206 ~~~~~~~~~~~~~~~l~~-~~~~~~l~~~~~l~G~~~g~~~~~~~~~~se~f~~~~~g~~~g~~~~~~~~G~~i~gp~i~  284 (366)
                         ....++..+....+. ..+...+++..++.|++.|...+.....+.|.++. +++++.++.+....+|..+ +|.++
T Consensus       269 ---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~g~~~-g~~~~  343 (375)
T TIGR00899       269 ---LLAALAGVAFYTGLAADNSLWALLMLQLLNAIFIGILAGIGMLYFQDLMPG-RAGAATTLYTNTGRVGWII-AGSVG  343 (375)
T ss_pred             ---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcc-hhhHHHHHHHHHHHHHHHH-HHHHH
Confidence               333333333333332 23344455566777888887777777888898865 5679999999999999996 99999


Q ss_pred             HHHhhhhhhhhhhhhhhccCCCCCcccCCCCCCcccCCcchHHHHHHHHHHHHHHHHHHH
Q 017795          285 SGIYDYYAEKQAGLLWKYNGNMLPVSFRDQETPTCLGSICYSITCGIMAGLCIIAMVMSL  344 (366)
Q Consensus       285 G~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~g~~~~~~~f~i~~~~~~~~~~~~~  344 (366)
                      |.+.|..+                                |+..|++.+++++++.++..
T Consensus       344 g~~~~~~g--------------------------------~~~~~~~~~~~~~~~~~~~~  371 (375)
T TIGR00899       344 GILAERWS--------------------------------YHAVYWFAIVMLIVALFCLL  371 (375)
T ss_pred             HHHHHhcc--------------------------------chhHHHHHHHHHHHHHHHHh
Confidence            99999876                                99999988888777766553

This family of proteins is an efflux system for lactose, glucose, aromatic glucosides and galactosides, cellobiose, maltose, a-methyl glucoside and other sugar compounds. They are found in both gram-negative and gram-postitive bacteria.

>TIGR00883 2A0106 metabolite-proton symporter

Probab=99.39  E-value=1.7e-11  Score=118.46  Aligned_cols=160  Identities=17%  Similarity=0.103  Sum_probs=112.4

Q ss_pred             CCHHHHhhhhH--HHHHHHHHHHhhhhHHHHHhcHHHHH-HHhCCChhHH--HHHHHHHHHhhhhhhhhhhhhhhhhhcc
Q 017795          127 FTLPQALMKAD--FLLLFFSLVLASGSGLTVIDNLGQIC-QSLGYADTSI--YVSMISIWNFLGRVGGGYFSEAIVRKFA  201 (366)
Q Consensus       127 ~~~~~~l~~~~--~~ll~~~~~~~~~~~~~~~~~l~~i~-~~~g~~~~~~--~~sl~~i~~~~g~~~~G~lsD~~grr~~  201 (366)
                      .++++.++++.  ++...+..++..........++|.+. +++|++....  ..++..++..++++++|+++||++||+.
T Consensus       208 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~~~~  287 (394)
T TIGR00883       208 GPIRETLTKHRKPFLLGLGLVIATTTTFYLITTYLPTYLTQTLGLSANSALLVLMLSLILFFITIPLSGALSDRIGRRPV  287 (394)
T ss_pred             CCHHHHHHhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHH
Confidence            35667777665  66666666665555566667888888 5578876654  6677788899999999999999998754


Q ss_pred             CchhHHHHHHHHHHHHHHH-HH-Hh--cchhHHHHHHHHHHHHhhhhhhhHHHHHHHhhCCCchhhHHHHH-HhHhhhhH
Q 017795          202 YPRPVAMAVAQVVMAFALL-YY-AI--GWPGEIYVTTVLVGLSYGAHWAIVPAAASELFGLKSFGALYNFL-TLASPAGS  276 (366)
Q Consensus       202 ~~R~~~~~~~~~~~~~~~~-l~-~~--~~~~~l~~~~~l~G~~~g~~~~~~~~~~se~f~~~~~g~~~g~~-~~~~~~G~  276 (366)
                      .     .....+....+.. +. ..  .+....+...++.|++.+..++...+.++|.+|.+.+++++++. +....+|+
T Consensus       288 ~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~g~  362 (394)
T TIGR00883       288 L-----IIFTVLAALLAVPLLMALLDSGSFTLFFFLVLGLALIGGMYTGPMGSFLPELFPTEVRYTGASLAYNLAGAIFG  362 (394)
T ss_pred             H-----HHHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHHhhhHHHHHHHhCCccceeeEeeehhHhHHHHHh
Confidence            3     1122222222211 11 11  23334455667778888888888999999999999999999984 45566788


Q ss_pred             HHhhhhHHHHHhhhhh
Q 017795          277 LIFSGVIASGIYDYYA  292 (366)
Q Consensus       277 ~i~gp~i~G~l~d~~~  292 (366)
                      .+ +|.++|++.|..+
T Consensus       363 ~~-~p~~~g~l~~~~g  377 (394)
T TIGR00883       363 GF-APYIAAALVAMTG  377 (394)
T ss_pred             hH-HHHHHHHHHHHcC
Confidence            75 9999999999876

This model represents the metabolite:H+ symport subfamily of the major facilitator superfamily (pfam00083), including citrate-H+ symporters, dicarboxylate:H+ symporters, the proline/glycine-betaine transporter ProP, etc.

>TIGR00881 2A0104 phosphoglycerate transporter family protein

Probab=99.38  E-value=2.1e-11  Score=117.16  Aligned_cols=160  Identities=14%  Similarity=0.177  Sum_probs=114.0

Q ss_pred             HHHHhhhhHHHHHHHHHHHhhhhHHHHHhcHHHHHH-HhCCChhHH--HHHHHHHHHhhhhhhhhhhhhhhhhhccCchh
Q 017795          129 LPQALMKADFLLLFFSLVLASGSGLTVIDNLGQICQ-SLGYADTSI--YVSMISIWNFLGRVGGGYFSEAIVRKFAYPRP  205 (366)
Q Consensus       129 ~~~~l~~~~~~ll~~~~~~~~~~~~~~~~~l~~i~~-~~g~~~~~~--~~sl~~i~~~~g~~~~G~lsD~~grr~~~~R~  205 (366)
                      .++.++++.+|.+.+..++.......+..++|.+.+ .+|++....  ..++..++..+++++.|+++||..+++..   
T Consensus       209 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~~r~~~~~~~---  285 (379)
T TIGR00881       209 LQYVLLNKVLWYISLGYVFVYVVRTGILDWSPLYLTQEKGFSKEKASWAFTLYELGGLVGTLLAGWLSDKLFNGRRG---  285 (379)
T ss_pred             HHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHcchhHHHHHHHHHHHcCCcch---
Confidence            456678888998888777777766777778888875 478887655  67778888999999999999987544322   


Q ss_pred             HHHHHHHHHHHHHHHHHHh---cchhHHHHHHHHHHHHhhhhhhhHHHHHHHhhCCCchhhHHHHHHhHhhhhHHHhhhh
Q 017795          206 VAMAVAQVVMAFALLYYAI---GWPGEIYVTTVLVGLSYGAHWAIVPAAASELFGLKSFGALYNFLTLASPAGSLIFSGV  282 (366)
Q Consensus       206 ~~~~~~~~~~~~~~~l~~~---~~~~~l~~~~~l~G~~~g~~~~~~~~~~se~f~~~~~g~~~g~~~~~~~~G~~i~gp~  282 (366)
                      ...........++...+..   .+.....+..++.|++.++........+.|.+|++.+|++.|+.+....+|+.+ +|.
T Consensus       286 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~-~~~  364 (379)
T TIGR00881       286 PLAVFFMALIIVSLLVYWLNPAANPLMDLICLFALGFLVYGPQMLIGVIASELAPKKAAGTAAGFVGFFAYLGGIL-AGL  364 (379)
T ss_pred             HHHHHHHHHHHHHHHHHhcCcchhHHHHHHHHHHHHHHHhhhhHHHHHHHHHhcCcchhHHHHHHHHHhhhhhhhh-hhh
Confidence            1111222222222222221   122334455566676665656666778899999999999999999999999996 999


Q ss_pred             HHHHHhhhhh
Q 017795          283 IASGIYDYYA  292 (366)
Q Consensus       283 i~G~l~d~~~  292 (366)
                      +.|.+.|..+
T Consensus       365 ~~g~l~~~~g  374 (379)
T TIGR00881       365 PLGYLADGFG  374 (379)
T ss_pred             hHHHHHHhhc
Confidence            9999999877

>PRK09874 drug efflux system protein MdtG; Provisional

Probab=99.38  E-value=1e-11  Score=121.64  Aligned_cols=178  Identities=14%  Similarity=0.160  Sum_probs=124.4

Q ss_pred             HHHhhhhHHHHHHHH-HHHhhhhHHHHHhcHHHHHHHhCCChhH------HHHHHHHHHHhhhhhhhhhhhhhhhhhccC
Q 017795          130 PQALMKADFLLLFFS-LVLASGSGLTVIDNLGQICQSLGYADTS------IYVSMISIWNFLGRVGGGYFSEAIVRKFAY  202 (366)
Q Consensus       130 ~~~l~~~~~~ll~~~-~~~~~~~~~~~~~~l~~i~~~~g~~~~~------~~~sl~~i~~~~g~~~~G~lsD~~grr~~~  202 (366)
                      .+.+++++++...+. .++.......+..+++.+..+.+.+...      ...++..++..++++.+|+++||++||+..
T Consensus       212 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~l~~~~~~~~~g~l~dr~g~~~~~  291 (408)
T PRK09874        212 VTSLKNPKLVLSLFVTTLIIQVATGSIAPILTLYVRELAGNVSNIAFISGMIASVPGVAALLSAPRLGKLGDRIGPEKIL  291 (408)
T ss_pred             HHhCcCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccchhH
Confidence            345566666543322 2222222233445566666665433221      134556677888999999999999987654


Q ss_pred             chhHHHHHHHHHHHHHHHHHH-hcchhHHHHHHHHHHHHhhhhhhhHHHHHHHhhCCCchhhHHHHHHhHhhhhHHHhhh
Q 017795          203 PRPVAMAVAQVVMAFALLYYA-IGWPGEIYVTTVLVGLSYGAHWAIVPAAASELFGLKSFGALYNFLTLASPAGSLIFSG  281 (366)
Q Consensus       203 ~R~~~~~~~~~~~~~~~~l~~-~~~~~~l~~~~~l~G~~~g~~~~~~~~~~se~f~~~~~g~~~g~~~~~~~~G~~i~gp  281 (366)
                            ..+.++.+++.+.+. ..+...+++..++.|++.+...+...+.+.+..+.+++|..+++.+....+|..+ ||
T Consensus       292 ------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~g~~~-gp  364 (408)
T PRK09874        292 ------ITALIFSVLLLIPMSFVQTPLQLGILRFLLGAADGALLPAVQTLLVYNSSNQIAGRIFSYNQSFRDIGNVT-GP  364 (408)
T ss_pred             ------HHHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhhHhhHHHHHHHHHHhCCcccceeeehHHHHHHHHHHHh-hH
Confidence                  444444444444433 3344556677778899998888888888888888899999999999999999996 99


Q ss_pred             hHHHHHhhhhhhhhhhhhhhccCCCCCcccCCCCCCcccCCcchHHHHHHHHHHHHHHHHHHHHH
Q 017795          282 VIASGIYDYYAEKQAGLLWKYNGNMLPVSFRDQETPTCLGSICYSITCGIMAGLCIIAMVMSLIV  346 (366)
Q Consensus       282 ~i~G~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~g~~~~~~~f~i~~~~~~~~~~~~~~~  346 (366)
                      .++|.+.|..+                                |++.|++.+++.+++++.....
T Consensus       365 ~~~G~l~~~~g--------------------------------~~~~f~~~~~~~l~~~~~~~~~  397 (408)
T PRK09874        365 LMGAAISANYG--------------------------------FRAVFLVTAGVVLFNAVYSWNS  397 (408)
T ss_pred             HHHHHHHhhcc--------------------------------hhHHHHHHHHHHHHHHHHHHHH
Confidence            99999998877                                9999999998888877666543

>PRK10406 alpha-ketoglutarate transporter; Provisional

Probab=99.38  E-value=5.9e-11  Score=118.10  Aligned_cols=180  Identities=12%  Similarity=0.014  Sum_probs=112.9

Q ss_pred             CHHHHhhhhHHHHHHHHHHHh-hhhHHHHHhcHHHHHH-HhCCChhHH--HHHHHHHHHhhhhhhhhhhhhhhhhhccCc
Q 017795          128 TLPQALMKADFLLLFFSLVLA-SGSGLTVIDNLGQICQ-SLGYADTSI--YVSMISIWNFLGRVGGGYFSEAIVRKFAYP  203 (366)
Q Consensus       128 ~~~~~l~~~~~~ll~~~~~~~-~~~~~~~~~~l~~i~~-~~g~~~~~~--~~sl~~i~~~~g~~~~G~lsD~~grr~~~~  203 (366)
                      ++++.++++++|.+.+..++. ....+.+..|+|++.+ .+|++..+.  ..++..+...+++++.|+++||++||+.. 
T Consensus       234 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~lp~~l~~~~g~s~~~~~~~~~i~~~~~~i~~~~~G~l~Dr~grr~~~-  312 (432)
T PRK10406        234 SLKGLWRNRRAFIMVLGFTAAGSLCFYTFTTYMQKYLVNTAGMHANVASGIMTAALFVFMLIQPLIGALSDKIGRRTSM-  312 (432)
T ss_pred             cHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCchHHH-
Confidence            577888888888776665543 4555667788999875 478887554  56666777788899999999999987533 


Q ss_pred             hhHHHHHHHHHHHHH---HHHHHh-c-chhHHHHHHHHHHHHhhhhhhhHHHHHHHhhCCCchhhHHHHHHhHhhh-hHH
Q 017795          204 RPVAMAVAQVVMAFA---LLYYAI-G-WPGEIYVTTVLVGLSYGAHWAIVPAAASELFGLKSFGALYNFLTLASPA-GSL  277 (366)
Q Consensus       204 R~~~~~~~~~~~~~~---~~l~~~-~-~~~~l~~~~~l~G~~~g~~~~~~~~~~se~f~~~~~g~~~g~~~~~~~~-G~~  277 (366)
                           .+..++.++.   .+.... . +....+....+.+++.+...+..+.+++|.||++.|++++|+.+..+.+ ++.
T Consensus       313 -----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~fp~~~r~t~~g~~~~~g~~~~g~  387 (432)
T PRK10406        313 -----LCFGSLAALFTVPILSALQNVSSPYAAFGLVMCALLIVSFYTSISGILKAEMFPAQVRALGVGLSYAVANALFGG  387 (432)
T ss_pred             -----HHHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCccchhhhHHHHHHHHHHHh
Confidence                 2222211111   111111 1 1222222222222333344456677889999999999999999876664 344


Q ss_pred             HhhhhHHHHHhhhhhhhhhhhhhhccCCCCCcccCCCCCCcccCCcchHHHHHHHHHHHHHHHHHHHHH
Q 017795          278 IFSGVIASGIYDYYAEKQAGLLWKYNGNMLPVSFRDQETPTCLGSICYSITCGIMAGLCIIAMVMSLIV  346 (366)
Q Consensus       278 i~gp~i~G~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~g~~~~~~~f~i~~~~~~~~~~~~~~~  346 (366)
                      . .|.+.+.+ +.++                               .|...+++.+++.+++.+..+++
T Consensus       388 ~-~p~~~~~l-~~~g-------------------------------~~~~~~~~~~~~~~i~~~~~~~l  423 (432)
T PRK10406        388 S-AEYVALSL-KSIG-------------------------------METAFFWYVTLMAVVAFLVSLML  423 (432)
T ss_pred             H-HHHHHHHH-HHhC-------------------------------CCcHHHHHHHHHHHHHHHHHHHh
Confidence            3 68878854 5444                               26666666666666665555543

>PRK05122 major facilitator superfamily transporter; Provisional

Probab=99.37  E-value=2.4e-11  Score=119.14  Aligned_cols=149  Identities=13%  Similarity=0.083  Sum_probs=112.5

Q ss_pred             HHHHHHHHHHHhhhhHHHHHhcHHHH-HHHhCCChhHH--HHHHHHHHHhhhhhhhhhhhhhhhhhccCchhHHHHHHHH
Q 017795          137 DFLLLFFSLVLASGSGLTVIDNLGQI-CQSLGYADTSI--YVSMISIWNFLGRVGGGYFSEAIVRKFAYPRPVAMAVAQV  213 (366)
Q Consensus       137 ~~~ll~~~~~~~~~~~~~~~~~l~~i-~~~~g~~~~~~--~~sl~~i~~~~g~~~~G~lsD~~grr~~~~R~~~~~~~~~  213 (366)
                      ++..+.+..+............+|.+ .+++|.+..+.  ..+...++..++.+++|+++||+|||+.+      ..+.+
T Consensus        16 ~~~~l~~~~~~~~~~~~~~~~~l~~~i~~~~g~s~~~~g~~~~~~~~~~~i~~~~~G~l~Dr~g~r~~l------~~~~~   89 (399)
T PRK05122         16 RIVSIVMFTFISYLTIGLPLAVLPGYVHDQLGFSAFLAGLVISLQYLATLLSRPHAGRYADTLGPKKAV------VFGLC   89 (399)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCccHHHHHHHHHHHHHHHHHhchhhHhHHhccCCcchH------HHHHH
Confidence            45555555555555555566677764 56789887765  78888999999999999999999998876      45544


Q ss_pred             HHHHHHHHHH---hc------chhHHHHHHHHHHHHhhhhhhhHHHHHHHhhCCCchhhHHHHHHhHhhhhHHHhhhhHH
Q 017795          214 VMAFALLYYA---IG------WPGEIYVTTVLVGLSYGAHWAIVPAAASELFGLKSFGALYNFLTLASPAGSLIFSGVIA  284 (366)
Q Consensus       214 ~~~~~~~l~~---~~------~~~~l~~~~~l~G~~~g~~~~~~~~~~se~f~~~~~g~~~g~~~~~~~~G~~i~gp~i~  284 (366)
                      +.+++.+.+.   ..      +...+++.+++.|++.+...+....++.|.++.++|+.+.++...+..+|..+ ||.++
T Consensus        90 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~-g~~l~  168 (399)
T PRK05122         90 GCALSGLLYLLAGLLAAWPVLSLLLLLLGRLLLGIGESLAGTGSILWGIGRVGALHTGRVISWNGIATYGALAI-GAPLG  168 (399)
T ss_pred             HHHHHHHHHHHhhhhhccchhHHHHHHHHHHHHHhhHHhhcchHHHHHHhhcChhhhccchhhhhhhhhHHHHH-HHHHH
Confidence            4444322221   11      12356778899999998888888888899999999999999988888888885 99999


Q ss_pred             HHHhhhhh
Q 017795          285 SGIYDYYA  292 (366)
Q Consensus       285 G~l~d~~~  292 (366)
                      +.+.+..+
T Consensus       169 ~~l~~~~g  176 (399)
T PRK05122        169 VLLYHWGG  176 (399)
T ss_pred             HHHHHccc
Confidence            99988776

>PRK15034 nitrate/nitrite transport protein NarU; Provisional

Probab=99.37  E-value=2.4e-11  Score=121.29  Aligned_cols=187  Identities=13%  Similarity=0.129  Sum_probs=130.9

Q ss_pred             hhHHHHHHHHHHHhhhhHHHHHhcHHHHHH-HhCCChhHH--HHHHHHHHHhhhhhhhhhhhhhhhhhccCchhHHHHHH
Q 017795          135 KADFLLLFFSLVLASGSGLTVIDNLGQICQ-SLGYADTSI--YVSMISIWNFLGRVGGGYFSEAIVRKFAYPRPVAMAVA  211 (366)
Q Consensus       135 ~~~~~ll~~~~~~~~~~~~~~~~~l~~i~~-~~g~~~~~~--~~sl~~i~~~~g~~~~G~lsD~~grr~~~~R~~~~~~~  211 (366)
                      ++.+|+.+++++.+....+......+.+.+ ++|++.++.  ..+++.+...++|+..|++.||+|.|+..      .++
T Consensus        33 ~r~l~~s~~~f~~~F~~w~~~~~l~~~~~~~~~~ls~~q~g~l~ai~~l~~al~rip~G~l~Dr~G~R~v~------~~~  106 (462)
T PRK15034         33 RRNLWISVSCLLLAFCVWMLFSAVTVNLNKIGFNFTTDQLFLLTALPSVSGALLRVPYSFMVPIFGGRRWT------VFS  106 (462)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCChHHH------HHH
Confidence            346777777777777777777766777766 799998876  78888999999999999999999987655      555


Q ss_pred             HHHHHHHHHHHHh------cchhHHHHHHHHHHHHhhhhhhhHHHHHHHhhCCCchhhHHHHHHhHhhhhHHHhhhhHHH
Q 017795          212 QVVMAFALLYYAI------GWPGEIYVTTVLVGLSYGAHWAIVPAAASELFGLKSFGALYNFLTLASPAGSLIFSGVIAS  285 (366)
Q Consensus       212 ~~~~~~~~~l~~~------~~~~~l~~~~~l~G~~~g~~~~~~~~~~se~f~~~~~g~~~g~~~~~~~~G~~i~gp~i~G  285 (366)
                      .++.++..++.+.      .+...+++..++.|++ |+.++.....+++.|+++++|++.|+....+++|..+ ++.+..
T Consensus       107 ~ll~~i~~~~~~~a~~~~~~s~~~lli~r~l~Gig-g~~f~~~~~~vs~wfp~~~rG~A~Gi~~g~G~~G~~l-~~~l~p  184 (462)
T PRK15034        107 TAILIIPCVWLGIAVQNPNTPFGIFIVIALLCGFA-GANFASSMGNISFFFPKAKQGSALGINGGLGNLGVSV-MQLVAP  184 (462)
T ss_pred             HHHHHHHHHHHHHHHcccCCCHHHHHHHHHHHHHH-HHhHHHHHHHHHHHCCHhHhHHHHHHHHHHHhhHHHH-HHHHHH
Confidence            5555555555443      3556788899999998 7778888889999999999999999996666666653 333332


Q ss_pred             H-----HhhhhhhhhhhhhhhccCCCCCcccCCCCCCcccCCcchHHHHHHHHHHHHHHHHHHHHHHh
Q 017795          286 G-----IYDYYAEKQAGLLWKYNGNMLPVSFRDQETPTCLGSICYSITCGIMAGLCIIAMVMSLIVVH  348 (366)
Q Consensus       286 ~-----l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~g~~~~~~~f~i~~~~~~~~~~~~~~~~~  348 (366)
                      .     +++..+...                .....   .+...|+.++++...+.++..++.+++..
T Consensus       185 ~~i~~~l~~~~G~~~----------------~~~~~---g~~~~~~~~~~~~~~~~iv~~i~~~~~~~  233 (462)
T PRK15034        185 LVIFVPVFAFLGVNG----------------VPQAD---GSVMSLANAAWIWVPLLAIATIAAWSGMN  233 (462)
T ss_pred             HHHHHHHHHHhcccc----------------ccccc---cchHHHHHHHHHHHHHHHHHHHHHHHhCC
Confidence            2     333333100                00000   01224888888888878777766665533

>TIGR00897 2A0118 polyol permease family

Probab=99.36  E-value=2.4e-11  Score=119.74  Aligned_cols=149  Identities=11%  Similarity=0.030  Sum_probs=110.0

Q ss_pred             HHHHHHHHHHhhhhHHHHHhcHHHHHHHhCCChhHH--HHHHHHHHHhhhhhhhhhhhhhhhhhccCchhHHHHHHHHHH
Q 017795          138 FLLLFFSLVLASGSGLTVIDNLGQICQSLGYADTSI--YVSMISIWNFLGRVGGGYFSEAIVRKFAYPRPVAMAVAQVVM  215 (366)
Q Consensus       138 ~~ll~~~~~~~~~~~~~~~~~l~~i~~~~g~~~~~~--~~sl~~i~~~~g~~~~G~lsD~~grr~~~~R~~~~~~~~~~~  215 (366)
                      ++..+++.++..........+++.+.+++|.+..+.  ..+.+.++..++.+++|+++||+|||+..      ..+.++.
T Consensus        15 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~i~~~~~g~l~dr~g~k~~l------~~~~~~~   88 (402)
T TIGR00897        15 LLWGYIGVVVFMTGDGLEQGWLSPFLKALGLSPQQSASAFTLYGIAAAISAWISGVVAEIIGPLKTM------MIGLLLW   88 (402)
T ss_pred             hhHHHHHHHHHHHhhhhHHHhHHHHHHHhCCCHHHhHHHHHHHHHHHHHHHHHHHHHHHHcCcHHHH------HHHHHHH
Confidence            344444444444444445557788889999987766  78888999999999999999999998755      4555555


Q ss_pred             HHHHHHH---Hh--cchhHHHHHHHHHHHHhhhhhhhHHHHHHHhhCCCchhhHHHHHHhHhhhhHHHhhhhHHHHHhhh
Q 017795          216 AFALLYY---AI--GWPGEIYVTTVLVGLSYGAHWAIVPAAASELFGLKSFGALYNFLTLASPAGSLIFSGVIASGIYDY  290 (366)
Q Consensus       216 ~~~~~l~---~~--~~~~~l~~~~~l~G~~~g~~~~~~~~~~se~f~~~~~g~~~g~~~~~~~~G~~i~gp~i~G~l~d~  290 (366)
                      +++.+++   ..  .+...+++..++.|++.+.......+.+.+.+++++++.+.|+.++...+|..++||.++|++.+.
T Consensus        89 ~~~~~~~~~~~~~~~~~~~l~~~~~i~G~g~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~~g~~~~~~l~~~  168 (402)
T TIGR00897        89 CVGHAAFIVFGLGHANYPLILLFYGIRGLGYPLFAYSFLVWVVYNTKQDNLSSAVGWFWAVYSIGIGVFGSYYSSYAIPA  168 (402)
T ss_pred             HHHHHHHHHHhccCccHHHHHHHHHHHHcchHHHHhHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccc
Confidence            5544332   22  244456677888888887766666677889999999999999999999999743489999999887


Q ss_pred             hh
Q 017795          291 YA  292 (366)
Q Consensus       291 ~~  292 (366)
                      .+
T Consensus       169 ~g  170 (402)
T TIGR00897       169 FG  170 (402)
T ss_pred             cc
Confidence            66

This family of proteins includes the ribitol and D-arabinitol transporters from Klebsiella pneumoniae and the alpha-ketoglutarate permease from Bacillus subtilis.

>cd06174 MFS The Major Facilitator Superfamily (MFS) is a large and diverse group of secondary transporters that includes uniporters, symporters, and antiporters

Probab=99.36  E-value=3.1e-11  Score=114.51  Aligned_cols=170  Identities=22%  Similarity=0.285  Sum_probs=137.3

Q ss_pred             hHHHHHHHHHHHhhhhHHHHHhcHHHHHHHh-CCChhHH--HHHHHHHHHhhhhhhhhhhhhhhhhhc-cCchhHHHHHH
Q 017795          136 ADFLLLFFSLVLASGSGLTVIDNLGQICQSL-GYADTSI--YVSMISIWNFLGRVGGGYFSEAIVRKF-AYPRPVAMAVA  211 (366)
Q Consensus       136 ~~~~ll~~~~~~~~~~~~~~~~~l~~i~~~~-g~~~~~~--~~sl~~i~~~~g~~~~G~lsD~~grr~-~~~R~~~~~~~  211 (366)
                      +.+|.+.+..++.......+..+.|.+.++. |++....  ..+...++..+++++.|+++||++||+ ..      ..+
T Consensus       175 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~------~~~  248 (352)
T cd06174         175 RLLLLLALAFFLLSFGYYGLLTYLPLYLQEVLGLSAAEAGLLLSLFGLGGILGALLGGLLSDRLGRRRLLL------LIG  248 (352)
T ss_pred             HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHH------HHH
Confidence            4566666666666666667777888888775 8877655  777888899999999999999999876 43      556


Q ss_pred             HHHHHHHHHHHH-hcchhHHHHHHHHHHHHhhhhhhhHHHHHHHhhCCCchhhHHHHHHhHhhhhHHHhhhhHHHHHhhh
Q 017795          212 QVVMAFALLYYA-IGWPGEIYVTTVLVGLSYGAHWAIVPAAASELFGLKSFGALYNFLTLASPAGSLIFSGVIASGIYDY  290 (366)
Q Consensus       212 ~~~~~~~~~l~~-~~~~~~l~~~~~l~G~~~g~~~~~~~~~~se~f~~~~~g~~~g~~~~~~~~G~~i~gp~i~G~l~d~  290 (366)
                      ..+..++.+++. ..+....++..++.|++.+..++...+.+.|.++++++++.+++.+....+|..+ +|.+.|.++|.
T Consensus       249 ~~~~~i~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i-~~~i~g~l~~~  327 (352)
T cd06174         249 LLLAALGLLLLALAPSLALLLVALLLLGFGLGFAFPALLTLASELAPPEARGTASGLFNTFGSLGGAL-GPLLAGLLLDT  327 (352)
T ss_pred             HHHHHHHHHHHHHhccHHHHHHHHHHHHHHHhccchhHHHHHHhhcCHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHhcc
Confidence            666666666555 3345567788888999999999999999999999999999999999999999996 99999999986


Q ss_pred             hhhhhhhhhhhccCCCCCcccCCCCCCcccCCcchHHHHHHHHHHHHHHHHHHH
Q 017795          291 YAEKQAGLLWKYNGNMLPVSFRDQETPTCLGSICYSITCGIMAGLCIIAMVMSL  344 (366)
Q Consensus       291 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~g~~~~~~~f~i~~~~~~~~~~~~~  344 (366)
                      .+                                |+..|++.+++++++.+...
T Consensus       328 ~~--------------------------------~~~~~~~~~~~~~i~~i~~~  349 (352)
T cd06174         328 GG--------------------------------YGGVFLILAALALLAALLLL  349 (352)
T ss_pred             cC--------------------------------cchHHHHHHHHHHHHHHHhe
Confidence            66                                99999999888877766543

MFS proteins facilitate the transport across cytoplasmic or internal membranes of a variety of substrates including ions, sugar phosphates, drugs, neurotransmitters, nucleosides, amino acids, and peptides. They do so using the electrochemical potential of the transported substrates. Uniporters transport a single substrate, while symporters and antiporters transport two substrates in the same or in opposite directions, respectively, across membranes. MFS proteins are typically 400 to 600 amino acids in length, and the majority contain 12 transmembrane alpha helices (TMs) connected by hydrophilic loops. The N- and C-terminal halves of these proteins display weak similarity and may be the result of a gene duplication/fusion event. Based on kinetic studies and the structures of a few bacterial superfamily members, GlpT (glycerol-3

>PRK10489 enterobactin exporter EntS; Provisional

Probab=99.36  E-value=3.1e-11  Score=119.22  Aligned_cols=183  Identities=11%  Similarity=0.036  Sum_probs=129.0

Q ss_pred             HHHhhhhHHHHHHHHHHHhhhhHHHHHhcHHHHHHH-hCCChhHH--HHHHHHHHHhhhhhhhhhhhhhhhhhccCchhH
Q 017795          130 PQALMKADFLLLFFSLVLASGSGLTVIDNLGQICQS-LGYADTSI--YVSMISIWNFLGRVGGGYFSEAIVRKFAYPRPV  206 (366)
Q Consensus       130 ~~~l~~~~~~ll~~~~~~~~~~~~~~~~~l~~i~~~-~g~~~~~~--~~sl~~i~~~~g~~~~G~lsD~~grr~~~~R~~  206 (366)
                      +..++++.++.+++..++... ...+..++|.+.++ +|++....  ..+...++..++.++.|+++||.++++.     
T Consensus       218 ~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~p~~~~~~~g~~~~~~g~~~~~~~~g~~ig~~~~~~l~~~~~~~~~-----  291 (417)
T PRK10489        218 RFLLASPVVGGIALLGGLLTM-ASAVRVLYPALADEVWQMGAAQIGLLYAAVPLGAALGALTSGWLAHSARPGLL-----  291 (417)
T ss_pred             HHHHcChHHHHHHHHHHHHHH-HHhHHHhhHHHHHhccCCChhHhHHHHHHHHHHHHHHHHHHHHhhhccCcchH-----
Confidence            345566766655544433322 23456678888887 88887654  6677788888999999999987543322     


Q ss_pred             HHHHHHHHHHHHHHHHHh-cchhHHHHHHHHHHHHhhhhhhhHHHHHHHhhCCCchhhHHHHHHhHhhhhHHHhhhhHHH
Q 017795          207 AMAVAQVVMAFALLYYAI-GWPGEIYVTTVLVGLSYGAHWAIVPAAASELFGLKSFGALYNFLTLASPAGSLIFSGVIAS  285 (366)
Q Consensus       207 ~~~~~~~~~~~~~~l~~~-~~~~~l~~~~~l~G~~~g~~~~~~~~~~se~f~~~~~g~~~g~~~~~~~~G~~i~gp~i~G  285 (366)
                       +..+.++.+++.+++.. .+.....++.++.|++.+...+...+++.+.+|.+.+|+++++.+....+|..+ ||.+.|
T Consensus       292 -l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~~-g~~l~G  369 (417)
T PRK10489        292 -MLLSTLGSFLAVGLFGLMPMWILAVLCLALFGYLSAISSLLQYTLLQTQTPDEMLGRINGLWTAQNVTGDAI-GAALLG  369 (417)
T ss_pred             -HHHHHHHHHHHHHHHHccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHhhhHhH-HHHHHH
Confidence             24445555555555543 333345566777888877766777788899999999999999999999999996 999999


Q ss_pred             HHhhhhhhhhhhhhhhccCCCCCcccCCCCCCcccCCcchHHHHHHHHHHHHHHHHHHHHHHhhcHH
Q 017795          286 GIYDYYAEKQAGLLWKYNGNMLPVSFRDQETPTCLGSICYSITCGIMAGLCIIAMVMSLIVVHRTKS  352 (366)
Q Consensus       286 ~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~g~~~~~~~f~i~~~~~~~~~~~~~~~~~~~r~  352 (366)
                      .+.|..+                                ++..+++.+++.++..++.....+++|+
T Consensus       370 ~l~~~~g--------------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~  404 (417)
T PRK10489        370 GLGAMMT--------------------------------PVASASASGFGLLIIGVLLLLVLGELRR  404 (417)
T ss_pred             HHHHHhc--------------------------------hhhHHHHHHHHHHHHHHHHHHhcccccc
Confidence            9999877                                7778887777666655555555555544

>PRK10077 xylE D-xylose transporter XylE; Provisional

Probab=99.36  E-value=2.5e-11  Score=121.82  Aligned_cols=162  Identities=17%  Similarity=0.144  Sum_probs=115.0

Q ss_pred             HhcHHHHHHHh--------CCChhHH--HHHHHHHHHhhhhhhhhhhhhhhhhhccCchhHHHHHHHHHHHHHHHHHHhc
Q 017795          156 IDNLGQICQSL--------GYADTSI--YVSMISIWNFLGRVGGGYFSEAIVRKFAYPRPVAMAVAQVVMAFALLYYAIG  225 (366)
Q Consensus       156 ~~~l~~i~~~~--------g~~~~~~--~~sl~~i~~~~g~~~~G~lsD~~grr~~~~R~~~~~~~~~~~~~~~~l~~~~  225 (366)
                      ....|.+.+.+        +.+....  ..+.+.++..++.+++|+++||+|||+.+      .++.++++++.+..+..
T Consensus        32 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~ig~~~~~~~~G~l~dr~Grr~~~------~~~~~l~~i~~~~~~~~  105 (479)
T PRK10077         32 SGTVESLNTVFVAPQNLSESAANSLLGFCVASALIGCIIGGALGGYCSNRFGRRDSL------KIAAVLFFISALGSAWP  105 (479)
T ss_pred             hHhHHHHHHHhcccccccccCChhHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHH------HHHHHHHHHHHHHHHhh
Confidence            33445565555        6665554  78899999999999999999999998765      55555555554443321


Q ss_pred             ----------c---hhHHHHHHHHHHHHhhhhhhhHHHHHHHhhCCCchhhHHHHHHhHhhhhHHHhhhhHHHHHhhhhh
Q 017795          226 ----------W---PGEIYVTTVLVGLSYGAHWAIVPAAASELFGLKSFGALYNFLTLASPAGSLIFSGVIASGIYDYYA  292 (366)
Q Consensus       226 ----------~---~~~l~~~~~l~G~~~g~~~~~~~~~~se~f~~~~~g~~~g~~~~~~~~G~~i~gp~i~G~l~d~~~  292 (366)
                                +   ...+++++++.|++.|+.++...++++|.+++++||.+.++...+..+|..+ ++.+++.+.....
T Consensus       106 ~~~~~~~~~~~~~~~~~l~~~R~l~G~~~g~~~~~~~~~i~e~~~~~~rg~~~~~~~~~~~~G~~~-~~~~~~~~~~~~~  184 (479)
T PRK10077        106 EFGFTSIGPDNTGYVPEFVIYRIIGGIGVGLASMLSPMYIAEIAPAHIRGKLVSFNQFAIIFGQLV-VYFVNYFIARSGD  184 (479)
T ss_pred             ccccccccccchhHHHHHHHHHHHHhhhHhHHhhHHHHHHHhhCChhhhhHHHHHHHHHHHHHHHH-HHHHHHHHhccCc
Confidence                      1   2346788999999999999999999999999999999999999999999886 7766655543221


Q ss_pred             hhhhhhhhhccCCCCCcccCCCCCCcccCCcchHHHHHHHHHHHHHHHHHHHHHHhh
Q 017795          293 EKQAGLLWKYNGNMLPVSFRDQETPTCLGSICYSITCGIMAGLCIIAMVMSLIVVHR  349 (366)
Q Consensus       293 ~~~~~~~~~~~~~~~~~~~~~~~~~~c~g~~~~~~~f~i~~~~~~~~~~~~~~~~~~  349 (366)
                      ...                        .+...||+.|++.++..++..+.. ++.++
T Consensus       185 ~~~------------------------~~~~gWr~~f~~~~~~~~~~~~~~-~~l~~  216 (479)
T PRK10077        185 ASW------------------------LNTDGWRYMFASEAIPALLFLMLL-YFVPE  216 (479)
T ss_pred             ccc------------------------cccCChHHHHHHHHHHHHHHHHHH-HcCCC
Confidence            000                        011139999998877776655443 34444

>PRK10642 proline/glycine betaine transporter; Provisional

Probab=99.35  E-value=5.8e-11  Score=120.19  Aligned_cols=144  Identities=13%  Similarity=0.028  Sum_probs=106.4

Q ss_pred             HHHHHHHHHHhhhhHHHHHhcHHHHHHHhCC--ChhH--H----HHHHHHHHHhhhhhhhhhhhhhhhhhccCchhHHHH
Q 017795          138 FLLLFFSLVLASGSGLTVIDNLGQICQSLGY--ADTS--I----YVSMISIWNFLGRVGGGYFSEAIVRKFAYPRPVAMA  209 (366)
Q Consensus       138 ~~ll~~~~~~~~~~~~~~~~~l~~i~~~~g~--~~~~--~----~~sl~~i~~~~g~~~~G~lsD~~grr~~~~R~~~~~  209 (366)
                      ++...++.++-......+....|.+.+++..  ++..  .    ..++..++..+|.++.|+++||+|||+.+      .
T Consensus        18 ~~~~~~g~~~~~~d~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ig~~~~G~l~Dr~Grr~~l------~   91 (490)
T PRK10642         18 ITAASLGNAMEWFDFGVYGFVAYALGKVFFPGADPSVQMIAALATFSVPFLIRPLGGLFFGMLGDKYGRQKIL------A   91 (490)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccHHHH------H
Confidence            3444455555555555666677878787743  2221  1    13556677889999999999999998766      7


Q ss_pred             HHHHHHHHHHHHHHh-cchh--------HHHHHHHHHHHHhhhhhhhHHHHHHHhhCCCchhhHHHHHHhHhhhhHHHhh
Q 017795          210 VAQVVMAFALLYYAI-GWPG--------EIYVTTVLVGLSYGAHWAIVPAAASELFGLKSFGALYNFLTLASPAGSLIFS  280 (366)
Q Consensus       210 ~~~~~~~~~~~l~~~-~~~~--------~l~~~~~l~G~~~g~~~~~~~~~~se~f~~~~~g~~~g~~~~~~~~G~~i~g  280 (366)
                      .+.++++++.++.+. .+..        .+++++++.|++.|+.++...++++|.+|+++||...++...+..+|..+ |
T Consensus        92 ~~~~l~~i~~~~~a~~~~~~~~g~~a~~~l~~~R~l~G~g~g~~~~~~~~~~~e~~p~~~Rg~~~~~~~~~~~~G~~l-g  170 (490)
T PRK10642         92 ITIVIMSISTFCIGLIPSYATIGIWAPILLLLCKMAQGFSVGGEYTGASIFVAEYSPDRKRGFMGSWLDFGSIAGFVL-G  170 (490)
T ss_pred             HHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHhHhHhhHHHHHHHHHHhCCCCCCcHHHHHHHHHHHHHHHH-H
Confidence            777777777777663 3322        36788999999999999999999999999999999999988888788775 7


Q ss_pred             hhHHHHHh
Q 017795          281 GVIASGIY  288 (366)
Q Consensus       281 p~i~G~l~  288 (366)
                      +.+...+.
T Consensus       171 ~~~~~~~~  178 (490)
T PRK10642        171 AGVVVLIS  178 (490)
T ss_pred             HHHHHHHH
Confidence            66554443

>TIGR00898 2A0119 cation transport protein

Probab=99.35  E-value=3.2e-11  Score=122.10  Aligned_cols=182  Identities=13%  Similarity=0.096  Sum_probs=121.0

Q ss_pred             CCHHHHhhhhHHHHHHHHHHHhhhhHHHHHhcHHHHHHHhCCChhHHHHHHHHHHHhhhhhhhhhhhhhhhhhccCchhH
Q 017795          127 FTLPQALMKADFLLLFFSLVLASGSGLTVIDNLGQICQSLGYADTSIYVSMISIWNFLGRVGGGYFSEAIVRKFAYPRPV  206 (366)
Q Consensus       127 ~~~~~~l~~~~~~ll~~~~~~~~~~~~~~~~~l~~i~~~~g~~~~~~~~sl~~i~~~~g~~~~G~lsD~~grr~~~~R~~  206 (366)
                      .++++.++++.++...+..++..+........++.....++.+.. ....+.++....+.++.++++||+|||+..    
T Consensus       314 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~i~~~~~~~~l~dr~grr~~~----  388 (505)
T TIGR00898       314 YSFLDLFRTPNLRKTTLCLMMLWFTTAFSYYGLVLDLGNLGGNIY-LDLFISGLVELPAKLITLLLIDRLGRRYTM----  388 (505)
T ss_pred             CcHHHHhCChHHHHHHHHHHHHHHHHHHHHHHHhccccccCCChH-HHHHHHHHHHHHHHHHHHHHHHHhCCHHHH----
Confidence            467888888888766555444333322222223333344454432 234455677788999999999999987654    


Q ss_pred             HHHHHHHHHHHHHHHHHh-cch--hHHHHHHHHHHHHhhhhhhhHHHHHHHhhCCCchhhHHHHHHhHhhhhHHHhhhhH
Q 017795          207 AMAVAQVVMAFALLYYAI-GWP--GEIYVTTVLVGLSYGAHWAIVPAAASELFGLKSFGALYNFLTLASPAGSLIFSGVI  283 (366)
Q Consensus       207 ~~~~~~~~~~~~~~l~~~-~~~--~~l~~~~~l~G~~~g~~~~~~~~~~se~f~~~~~g~~~g~~~~~~~~G~~i~gp~i  283 (366)
                        .+..++.+++.+++.. .+.  ....+..++.+++.++.++..+.+++|++|++.|+++.|+.++...+|+.+ +|.+
T Consensus       389 --~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~g~~~~~~~ig~~i-~p~i  465 (505)
T TIGR00898       389 --AASLLLAGVALLLLLFVPVDLYFLRTALAVLGKFGITSAFQMVYLYTAELYPTVVRNLGVGVCSTMARVGSII-SPFL  465 (505)
T ss_pred             --HHHHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHHHHHHHHHHhcccccHHHHhhhHhHHHHHHHHHHHH-HhHH
Confidence              5555555555554442 222  334445556667777778888899999999999999999999999999996 9999


Q ss_pred             HHHHhhhhhhhhhhhhhhccCCCCCcccCCCCCCcccCCcchHHHHHHHHHHHHHHHHHHHHHHhhcH
Q 017795          284 ASGIYDYYAEKQAGLLWKYNGNMLPVSFRDQETPTCLGSICYSITCGIMAGLCIIAMVMSLIVVHRTK  351 (366)
Q Consensus       284 ~G~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~g~~~~~~~f~i~~~~~~~~~~~~~~~~~~~r  351 (366)
                      .+ + +..+                                +...+++.+++++++.++.++ .+++|
T Consensus       466 ~~-~-~~~~--------------------------------~~~~~~~~~~~~~~~~~~~~~-lpet~  498 (505)
T TIGR00898       466 VY-L-GEKW--------------------------------LFLPLVLFGGLALLAGILTLF-LPETK  498 (505)
T ss_pred             HH-H-HHHH--------------------------------HhhHHHHHHHHHHHHHHHHHc-CcCCC
Confidence            88 3 3333                                566777777777776665544 34544

>TIGR00792 gph sugar (Glycoside-Pentoside-Hexuronide) transporter

Probab=99.35  E-value=7.7e-11  Score=116.73  Aligned_cols=157  Identities=15%  Similarity=0.140  Sum_probs=110.0

Q ss_pred             HHHHhhhhHHHHHHHHHHHhhhhHHHHHhcHHHHHHH-hCCChhHH-HHHHHHHHHhhhhhhhhhhhhhhhhhccCchhH
Q 017795          129 LPQALMKADFLLLFFSLVLASGSGLTVIDNLGQICQS-LGYADTSI-YVSMISIWNFLGRVGGGYFSEAIVRKFAYPRPV  206 (366)
Q Consensus       129 ~~~~l~~~~~~ll~~~~~~~~~~~~~~~~~l~~i~~~-~g~~~~~~-~~sl~~i~~~~g~~~~G~lsD~~grr~~~~R~~  206 (366)
                      +++.++++.++.+.+..++............+++.+. ++.+.... +.++..++..++.+++|+++||+|+|+..    
T Consensus       215 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ii~~~~~~~l~~r~g~~~~~----  290 (437)
T TIGR00792       215 FKALFKNDQLLILCLAYLFYNLAFNIKNGVQVYYFTYVLGDPELFSYMGSIAIVAGLIGVLLFPRLVKKFGRKILF----  290 (437)
T ss_pred             HHHHhCCHHHHHHHHHHHHHHHHHHHHcchhheeEeeecCChHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcHHHH----
Confidence            4556678888877766666555444444444444443 33222222 56666788899999999999999987654    


Q ss_pred             HHHHHHHHHHHHHHHHHh--cchhHHHHHHHHHHHHhhhhhhhHHHHHHHhhC-------CCchhhHHHHHHhHhhhhHH
Q 017795          207 AMAVAQVVMAFALLYYAI--GWPGEIYVTTVLVGLSYGAHWAIVPAAASELFG-------LKSFGALYNFLTLASPAGSL  277 (366)
Q Consensus       207 ~~~~~~~~~~~~~~l~~~--~~~~~l~~~~~l~G~~~g~~~~~~~~~~se~f~-------~~~~g~~~g~~~~~~~~G~~  277 (366)
                        ..+.++++++.+++..  .+...+++..++.|++.+..++..+++++|..+       .+..|..+++.+....+|..
T Consensus       291 --~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~~~~g~~  368 (437)
T TIGR00792       291 --AGGILLMVLGYLIFFFAGSNLPLILVLIILAGFGQNFVTGLVWALVADTVDYGEWKTGVRAEGLVYSVRTFVRKLGQA  368 (437)
T ss_pred             --HHHHHHHHHHHHHHHHcchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhcCccchHHHHHHHHHHHHHHHH
Confidence              4555555555544432  233445566677888888888888888888754       56689999999999999999


Q ss_pred             HhhhhHHHHHhhhhh
Q 017795          278 IFSGVIASGIYDYYA  292 (366)
Q Consensus       278 i~gp~i~G~l~d~~~  292 (366)
                      + ++.+.|++.|..|
T Consensus       369 l-g~~i~g~ll~~~G  382 (437)
T TIGR00792       369 L-AGFLVGLILGIIG  382 (437)
T ss_pred             H-HHHHHHHHHHHcC
Confidence            6 9999999998765

GPH:cation symporters catalyze uptake of sugars in symport with a monovalent cation (H+ or Na+). Members of this family includes transporters for melibiose, lactose, raffinose, glucuronides, pentosides and isoprimeverose. Mutants of two groups of these symporters (the melibiose permeases of enteric bacteria, and the lactose permease of Streptococcus thermophilus) have been isolated in which altered cation specificity is observed or in which sugar transport is uncoupled from cation symport (i.e., uniport is catalyzed). The various members of the family can use Na+, H+ or Li, Na+ or Li+, H+ or Li+, or only H+ as the symported cation. All of these proteins possess twelve putative transmembrane a-helical spanners.

>PRK12307 putative sialic acid transporter; Provisional

Probab=99.35  E-value=4.4e-11  Score=118.18  Aligned_cols=158  Identities=13%  Similarity=0.147  Sum_probs=108.1

Q ss_pred             CHHHHhhhhHHHHHHHHH---HHhhhhHHHHHhcHHHHHHHhCCChhHH--HHHHHHHHHhhhhhhhhhhhhhhhhhccC
Q 017795          128 TLPQALMKADFLLLFFSL---VLASGSGLTVIDNLGQICQSLGYADTSI--YVSMISIWNFLGRVGGGYFSEAIVRKFAY  202 (366)
Q Consensus       128 ~~~~~l~~~~~~ll~~~~---~~~~~~~~~~~~~l~~i~~~~g~~~~~~--~~sl~~i~~~~g~~~~G~lsD~~grr~~~  202 (366)
                      ++++.++++.++.....+   ++..+....+..++|.+.++.|++....  ..++..++..++++++|+++||++||+..
T Consensus       220 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~g~~~~g~l~dr~~~~~~~  299 (426)
T PRK12307        220 SMKGLFNRAQFPLTLCVFIVLFSIFGANWPIFGLLPTYLAGEGFDTGVVSNLMTAAAFGTVLGNIVWGLCADRIGLKKTF  299 (426)
T ss_pred             HHHHHHhhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHH
Confidence            456777888776543322   2222333345678899998889877654  66778888999999999999999987543


Q ss_pred             chhHHHHHHHHHHHHHHHHHH-hcchhHHHHHHHHHHHHh--hhhhhhHHHHHHHhhCCCchhhHHHHHHhHhhhhHHHh
Q 017795          203 PRPVAMAVAQVVMAFALLYYA-IGWPGEIYVTTVLVGLSY--GAHWAIVPAAASELFGLKSFGALYNFLTLASPAGSLIF  279 (366)
Q Consensus       203 ~R~~~~~~~~~~~~~~~~l~~-~~~~~~l~~~~~l~G~~~--g~~~~~~~~~~se~f~~~~~g~~~g~~~~~~~~G~~i~  279 (366)
                            ..+.++.++..+++. ........+..+++|++.  .+..++.+..+.|.+|.+.+|++.|+......+|+.+ 
T Consensus       300 ------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~~~~~-  372 (426)
T PRK12307        300 ------SIGLLMSFLFIFPLFRIPQDNYLLLGACLFGLMATNVGVGGLVPKFLYDYFPLEVRGLGTGLIYNLAATSGTF-  372 (426)
T ss_pred             ------HHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHhcccHhHHHHHHHHHhCcHHHHhhhhhHHHHHHhHHHHH-
Confidence                  344444433333322 222222223333444332  3345667788899999999999999999999999996 


Q ss_pred             hhhHHHHHhhhhh
Q 017795          280 SGVIASGIYDYYA  292 (366)
Q Consensus       280 gp~i~G~l~d~~~  292 (366)
                      +|.+.|++.|..+
T Consensus       373 gp~~~g~l~~~~g  385 (426)
T PRK12307        373 NSMAATWLGITMG  385 (426)
T ss_pred             HHHHHHHHHHccc
Confidence            9999999998876

>TIGR00887 2A0109 phosphate:H+ symporter

Probab=99.35  E-value=9.2e-12  Score=126.35  Aligned_cols=173  Identities=13%  Similarity=0.070  Sum_probs=107.9

Q ss_pred             hhHHHHHhcHHHHHHHhCCChhH------------H--HHHHHHHHHhhhhhhhhhhhhhhhhhccCchhHHHHHHHHHH
Q 017795          150 GSGLTVIDNLGQICQSLGYADTS------------I--YVSMISIWNFLGRVGGGYFSEAIVRKFAYPRPVAMAVAQVVM  215 (366)
Q Consensus       150 ~~~~~~~~~l~~i~~~~g~~~~~------------~--~~sl~~i~~~~g~~~~G~lsD~~grr~~~~R~~~~~~~~~~~  215 (366)
                      ...++...+.|.+.++.|++...            .  ...+..++..++.+++++++||+|||+..      .++.+++
T Consensus       302 ~~~y~~~~~~p~i~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~g~~~~~~l~dr~gRR~~l------~~~~~~~  375 (502)
T TIGR00887       302 IAFYGVNLNQKVILSAIGYSPPAATNNAYEELYKTAVGNLIIALAGTVPGYWVTVFLVDIIGRKPIQ------LMGFFIL  375 (502)
T ss_pred             HHHHccccccHHHHHHHcCCCCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcchhHH------HHHHHHH
Confidence            34445666789999988886431            1  23334456667889999999999998654      3444444


Q ss_pred             HHHHHHHHh--c--c-hhHHHHHHHHHHHHhhhhhhhHHHHHHHhhCCCchhhHHHHHHhHhhhhHHHhhhhHHHHHhhh
Q 017795          216 AFALLYYAI--G--W-PGEIYVTTVLVGLSYGAHWAIVPAAASELFGLKSFGALYNFLTLASPAGSLIFSGVIASGIYDY  290 (366)
Q Consensus       216 ~~~~~l~~~--~--~-~~~l~~~~~l~G~~~g~~~~~~~~~~se~f~~~~~g~~~g~~~~~~~~G~~i~gp~i~G~l~d~  290 (366)
                      +++..++..  .  . ...+....+...++..+..++.+.+.+|+||.+.|++++|+.+....+|+++ +|.+.|++.|.
T Consensus       376 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~~p~~~R~~~~g~~~~~~~~~~~~-~~~~~~~l~~~  454 (502)
T TIGR00887       376 TVLFFVLGFAYNHLSTHGFLAIYVLAQFFANFGPNATTFIVPGEVFPTRYRSTAHGISAASGKAGAII-GQFGFLYLAQH  454 (502)
T ss_pred             HHHHHHHHHHHHhcchhHHHHHHHHHHHHHhcCCCchhhhhhhccCchhHHHHHHHHHHHHhhhHHHH-HHHHhhhhhcc
Confidence            444333321  1  1 1111112112222222345667778899999999999999999999999996 99999999985


Q ss_pred             hhhhhhhhhhhccCCCCCcccCCCCCCcccCCcchHHHHHHHHHHHHHHHHHHHHHHhhcHH
Q 017795          291 YAEKQAGLLWKYNGNMLPVSFRDQETPTCLGSICYSITCGIMAGLCIIAMVMSLIVVHRTKS  352 (366)
Q Consensus       291 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~g~~~~~~~f~i~~~~~~~~~~~~~~~~~~~r~  352 (366)
                      .+..++     +                 +....+...|++.+++++++.+.. ++.++++.
T Consensus       455 ~~~~~~-----~-----------------~~~~~~~~~~~i~~~~~~~~~i~~-~~lpEt~~  493 (502)
T TIGR00887       455 GDPTKG-----Y-----------------PTGIWMGHVLEIFALFMFLGILFT-LLIPETKG  493 (502)
T ss_pred             cccccc-----c-----------------cccccchHHHHHHHHHHHHHHHHh-eEeccCCC
Confidence            431100     0                 000015667888888887776654 44466654

This model represents the phosphate uptake symporter subfamily of the major facilitator superfamily (pfam00083).

>PRK03633 putative MFS family transporter protein; Provisional

Probab=99.34  E-value=5.8e-11  Score=116.01  Aligned_cols=149  Identities=15%  Similarity=0.098  Sum_probs=122.3

Q ss_pred             hhHHHHHHHHHHHhhhhHHHHHhcHHHHHHHhCCChhHH--HHHHHHHHHhhhhhhhhhhhhhhhhhccCchhHHHHHHH
Q 017795          135 KADFLLLFFSLVLASGSGLTVIDNLGQICQSLGYADTSI--YVSMISIWNFLGRVGGGYFSEAIVRKFAYPRPVAMAVAQ  212 (366)
Q Consensus       135 ~~~~~ll~~~~~~~~~~~~~~~~~l~~i~~~~g~~~~~~--~~sl~~i~~~~g~~~~G~lsD~~grr~~~~R~~~~~~~~  212 (366)
                      ++++|+++.+.++...........+|.+.+++|.+..++  ..+...++..+++++.|+++||+|||+..      ..+.
T Consensus         5 ~~~~~~~~~~~~~~~~~~~~~~~~lp~~~~~~~~s~~~~G~~~s~~~l~~~~~~~~~g~l~dr~g~k~~~------~~~~   78 (381)
T PRK03633          5 TRPVLLLLCGLLLLTLAIAVLNTLVPLWLAQEHLPTWQVGVVSSSYFTGNLVGTLLAGYVIKRIGFNRSY------YLAS   78 (381)
T ss_pred             HHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHH------HHHH
Confidence            445788877777776666677788999999999987766  88888999999999999999999998765      5566


Q ss_pred             HHHHHHHHHHH-hcchhHHHHHHHHHHHHhhhhhhhHHHHHHHhhCCCchhhHHHHHHhHhhhhHHHhhhhHHHHHhhh
Q 017795          213 VVMAFALLYYA-IGWPGEIYVTTVLVGLSYGAHWAIVPAAASELFGLKSFGALYNFLTLASPAGSLIFSGVIASGIYDY  290 (366)
Q Consensus       213 ~~~~~~~~l~~-~~~~~~l~~~~~l~G~~~g~~~~~~~~~~se~f~~~~~g~~~g~~~~~~~~G~~i~gp~i~G~l~d~  290 (366)
                      ++.+++.++.. ..+...++++.++.|++.+..++...+.+.+..+.++++.+++.......+|..+ ||.+++.+.+.
T Consensus        79 ~~~~~~~~~~~~~~~~~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~-g~~~~~~l~~~  156 (381)
T PRK03633         79 LIFAAGCAGLGLMVGFWSWLAWRFVAGIGCAMIWVVVESALMCSGTSRNRGRLLAAYMMVYYLGTVL-GQLLVSKVSTE  156 (381)
T ss_pred             HHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHH-HHHHHhccccc
Confidence            66666655554 4556677888999999998887777777788888889999999999999999996 99999988765

>TIGR02718 sider_RhtX_FptX siderophore transporter, RhtX/FptX family

Probab=99.33  E-value=8.5e-11  Score=115.10  Aligned_cols=175  Identities=14%  Similarity=0.078  Sum_probs=121.5

Q ss_pred             CHHHHhhhhHHHHHHHHHHHhhhhHHHHHhcHHHHHHHhCCChhHH--HHHHHH-HHHhhhhhhhhhhhhhhhhhccCch
Q 017795          128 TLPQALMKADFLLLFFSLVLASGSGLTVIDNLGQICQSLGYADTSI--YVSMIS-IWNFLGRVGGGYFSEAIVRKFAYPR  204 (366)
Q Consensus       128 ~~~~~l~~~~~~ll~~~~~~~~~~~~~~~~~l~~i~~~~g~~~~~~--~~sl~~-i~~~~g~~~~G~lsD~~grr~~~~R  204 (366)
                      ++++.+|++.+|......++..........+.+.+.++.|++..++  ...... +...++.+++|++.||+++|+..  
T Consensus       200 ~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~~G~s~~~ig~~~~~~~~~~~~~g~~~~g~l~~r~g~~~~l--  277 (390)
T TIGR02718       200 SLFRFFRRPLAWSLLALALLSAMTAVSGFGLSKLYLVDAGWPLEWIGRLGMAGGAVTVLLGCGGGAWLVRRAGLWRTF--  277 (390)
T ss_pred             HHHHHHcCcCHHHHHHHHHHHHHHHHHHHHHhhHHHHhcCCCHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhhHHHHH--
Confidence            3567888888887776666665555555567788888999998876  334443 35667889999999999987644  


Q ss_pred             hHHHHHHHHHHHHHH-HHHHh------cchhHHHHHHHHHHHHhhhhhhhHHHHHHHhhCC-CchhhHHHHHHhHhhhhH
Q 017795          205 PVAMAVAQVVMAFAL-LYYAI------GWPGEIYVTTVLVGLSYGAHWAIVPAAASELFGL-KSFGALYNFLTLASPAGS  276 (366)
Q Consensus       205 ~~~~~~~~~~~~~~~-~l~~~------~~~~~l~~~~~l~G~~~g~~~~~~~~~~se~f~~-~~~g~~~g~~~~~~~~G~  276 (366)
                          ..+.++.++.. ..+..      .....++...++.+++.|..++...+.+.+..++ +.+|+.+++.+....+|.
T Consensus       278 ----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~lg~  353 (390)
T TIGR02718       278 ----ILGVGLAGSLALLWFAQAAFWLAPGIAVAWSCSAFGSLITGITSVAIYTAFMRFAGDGDQAGTDVTAVQSTRDLGE  353 (390)
T ss_pred             ----HHHHHHHHHHHHHHHHHHHcccCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcccchHHHHHHHHHHHHHHH
Confidence                22333221111 11111      1112223333445666777777777777777776 789999999999999999


Q ss_pred             HHhhhhHHHHHhhhhhhhhhhhhhhccCCCCCcccCCCCCCcccCCcchHHHHHHHHHHHHHHHH
Q 017795          277 LIFSGVIASGIYDYYAEKQAGLLWKYNGNMLPVSFRDQETPTCLGSICYSITCGIMAGLCIIAMV  341 (366)
Q Consensus       277 ~i~gp~i~G~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~g~~~~~~~f~i~~~~~~~~~~  341 (366)
                      .+ ||.++|+++|..|                                |+..|++.+++.+++.+
T Consensus       354 ~~-g~~~~G~l~~~~G--------------------------------~~~~f~~~~~~~l~a~~  385 (390)
T TIGR02718       354 LI-ASSIAGYLTDRFG--------------------------------YAGGFLSGTVLAVLAIL  385 (390)
T ss_pred             HH-HHHHHHHHHHHHc--------------------------------cHHHHHHHHHHHHHHHH
Confidence            96 9999999999887                                88899887776666543

RhtX from Sinorhizobium meliloti 2011 and FptX from Pseudomonas aeruginosa appear to be single polypeptide transporters, from the major facilitator family (see pfam07690) for import of siderophores as a means to import iron. This function was suggested by proximity to siderophore biosynthesis genes and then confirmed by study of knockout and heterologous expression phenotypes.

>TIGR00896 CynX cyanate transporter

Probab=99.33  E-value=4.6e-11  Score=115.30  Aligned_cols=159  Identities=12%  Similarity=0.029  Sum_probs=116.6

Q ss_pred             CHHHHhhhhHHHHHHHHHHHhhhhHHHHHhcHHHHHHHhCCChhHH--HHHHHHHHHhhhhhhhhhhhhhhhhhccCchh
Q 017795          128 TLPQALMKADFLLLFFSLVLASGSGLTVIDNLGQICQSLGYADTSI--YVSMISIWNFLGRVGGGYFSEAIVRKFAYPRP  205 (366)
Q Consensus       128 ~~~~~l~~~~~~ll~~~~~~~~~~~~~~~~~l~~i~~~~g~~~~~~--~~sl~~i~~~~g~~~~G~lsD~~grr~~~~R~  205 (366)
                      ..++.++++.+|.+.+..++..........++|.+.++.|++....  ..+++.++..++++++|+++||+++|+..   
T Consensus       189 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lp~~~~~~g~~~~~~g~~~~~~~~~~i~~~~~~g~l~dr~~~~~~~---  265 (355)
T TIGR00896       189 TPVRIWRSPLAWQVTVFFGLQSGLYYSLIGWLPAILISHGASAATAGSLLALMQLAQAASALLIPALARRVKDQRGI---  265 (355)
T ss_pred             CCchhhcCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHhHHHHHhhhccchHH---
Confidence            4567788898988776666665666667788999999999887655  78888999999999999999999543221   


Q ss_pred             HHHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHhhhhhhhHHHHHHHhhCC-CchhhHHHHHHhHhhhhHHHhhhhHH
Q 017795          206 VAMAVAQVVMAFALLYYAIGWPGEIYVTTVLVGLSYGAHWAIVPAAASELFGL-KSFGALYNFLTLASPAGSLIFSGVIA  284 (366)
Q Consensus       206 ~~~~~~~~~~~~~~~l~~~~~~~~l~~~~~l~G~~~g~~~~~~~~~~se~f~~-~~~g~~~g~~~~~~~~G~~i~gp~i~  284 (366)
                        +.++.++++++.+.+............++.|++.|..++...+.+.+..+. ++++..+++.+....+|..+ +|.++
T Consensus       266 --~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~g~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~-gp~~~  342 (355)
T TIGR00896       266 --VAVLAVLQLVGLCGLLFAPMHGLWAWALVLGLGQGGAFPLALTLIGLRSRQAAQAAALSAMAQSIGYLLAAL-GPLFV  342 (355)
T ss_pred             --HHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHhhhhHhHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHHHH-HHHHH
Confidence              234444555554443322212222345678999988888877777666554 56788999998888899886 99999


Q ss_pred             HHHhhhhh
Q 017795          285 SGIYDYYA  292 (366)
Q Consensus       285 G~l~d~~~  292 (366)
                      |++.|.++
T Consensus       343 G~l~~~~g  350 (355)
T TIGR00896       343 GVLHDISG  350 (355)
T ss_pred             HHHHHHhc
Confidence            99999887

This family of proteins is involved in active transport of cyanate. The cyanate transporter in E.Coli is used to transport cyanate into the cell so it can be metabolized into ammonia and bicarbonate. This process is used to overcome the toxicity of environmental cyanate.

>PRK10077 xylE D-xylose transporter XylE; Provisional

Probab=99.32  E-value=6e-11  Score=119.04  Aligned_cols=159  Identities=14%  Similarity=0.133  Sum_probs=109.9

Q ss_pred             HHhcHHHHHHHhCCChhHH--HHHHHHHHHhhhhhhhhhhhhhhhhhccCchhHHHHHHHHHHHHHHHHHHh---cc-hh
Q 017795          155 VIDNLGQICQSLGYADTSI--YVSMISIWNFLGRVGGGYFSEAIVRKFAYPRPVAMAVAQVVMAFALLYYAI---GW-PG  228 (366)
Q Consensus       155 ~~~~l~~i~~~~g~~~~~~--~~sl~~i~~~~g~~~~G~lsD~~grr~~~~R~~~~~~~~~~~~~~~~l~~~---~~-~~  228 (366)
                      ...+.|.+.++.|++....  ......+.+.++.+++|+++||++||+..      ..+.++++++.+++..   .+ ..
T Consensus       290 ~~~~~p~i~~~~g~~~~~~~~~~~~~~~~~~i~~~~~g~l~dr~g~r~~~------i~~~~~~~v~~~~l~~~~~~~~~~  363 (479)
T PRK10077        290 VLYYAPEIFKTLGASTDIALLQTIIVGVINLTFTVLAIMTVDKFGRKPLQ------IIGALGMAIGMFSLGTAFYTQAPG  363 (479)
T ss_pred             HHHHHHHHHHHcCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHhcChHHH------HHhHHHHHHHHHHHHHHHhcCccc
Confidence            4456788888899876543  55567788899999999999999987654      5555555555554431   11 11


Q ss_pred             -HHHHHHHHHHHHhhhhh-hhHHHHHHHhhCCCchhhHHHHHHhHhhhhHHHhhhhHHHHHh------hhhhhhhhhhhh
Q 017795          229 -EIYVTTVLVGLSYGAHW-AIVPAAASELFGLKSFGALYNFLTLASPAGSLIFSGVIASGIY------DYYAEKQAGLLW  300 (366)
Q Consensus       229 -~l~~~~~l~G~~~g~~~-~~~~~~~se~f~~~~~g~~~g~~~~~~~~G~~i~gp~i~G~l~------d~~~~~~~~~~~  300 (366)
                       ....+.++++.+.+..+ +..+.+++|.+|.+.|+++.|+.+....+|..+ ++.+.+.+.      |..+        
T Consensus       364 ~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~g~~~~~~~~g~~~-~~~~~p~~~~~~~~~~~~~--------  434 (479)
T PRK10077        364 IVALLSMLFYVAAFAMSWGPVCWVLLSEIFPNAIRGKALAIAVAAQWIANYF-VSWTFPMMDKNSWLVAHFH--------  434 (479)
T ss_pred             HHHHHHHHHHHHHHhccccchhHHHhHhhCChhHHHHHHHHHHHHHHHHHHH-HHHHhHHHHhccchhhhcc--------
Confidence             22234444454444333 567889999999999999999999999888886 766665444      3333        


Q ss_pred             hccCCCCCcccCCCCCCcccCCcchHHHHHHHHHHHHHHHHHHHHHHhhcHH
Q 017795          301 KYNGNMLPVSFRDQETPTCLGSICYSITCGIMAGLCIIAMVMSLIVVHRTKS  352 (366)
Q Consensus       301 ~~~~~~~~~~~~~~~~~~c~g~~~~~~~f~i~~~~~~~~~~~~~~~~~~~r~  352 (366)
                                              +++.|++.++++++++++.+.+.+++|+
T Consensus       435 ------------------------~~~~~~~~~~~~~~~~~~~~~~~~e~~~  462 (479)
T PRK10077        435 ------------------------NGFSYWIYGCMGVLAALFMWKFVPETKG  462 (479)
T ss_pred             ------------------------CccHHHHHHHHHHHHHHHHHhccccCCC
Confidence                                    7778888888888877776666666553

>PF11700 ATG22: Vacuole effluxer Atg22 like; InterPro: IPR024671 Autophagy is a major survival mechanism in which eukaryotes recycle cellular nutrients during stress conditions

Probab=99.31  E-value=1.9e-10  Score=115.87  Aligned_cols=183  Identities=17%  Similarity=0.219  Sum_probs=137.9

Q ss_pred             HHHHhhhhHHHHHHHHHHHhhhhHHHHHhcHHHHHH-HhCCChhHH--HHHHHHHHHhhhhhhhhhhhhhhhhhccCchh
Q 017795          129 LPQALMKADFLLLFFSLVLASGSGLTVIDNLGQICQ-SLGYADTSI--YVSMISIWNFLGRVGGGYFSEAIVRKFAYPRP  205 (366)
Q Consensus       129 ~~~~l~~~~~~ll~~~~~~~~~~~~~~~~~l~~i~~-~~g~~~~~~--~~sl~~i~~~~g~~~~G~lsD~~grr~~~~R~  205 (366)
                      ++++.+.++.+.+++++++..-+..+++.....+.+ ++|++..+.  +..+..+.+++|.+++|++.||+|.|..  |.
T Consensus       274 ~k~~~~~~~~~~fLia~~l~~dg~~ti~~~~~i~a~~~lg~s~~~l~~~~l~~~i~a~~Ga~~~g~l~~r~g~k~~--~~  351 (477)
T PF11700_consen  274 FKEIRKLRQLFLFLIAYFLYSDGVNTIISFAGIYATEVLGMSTTQLIVFGLVVQIVAIIGALLFGWLQDRFGPKTK--RT  351 (477)
T ss_pred             HHHHHhChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchh--HH
Confidence            344555667777777777665555555555666665 699998876  6667788899999999999999998722  11


Q ss_pred             HHHHHHHHHHHHHHHHHH--------hcchhHHHHHHHHHHHHhhhhhhhHHHHHHHhhCCCchhhHHHHHHhHhhhhHH
Q 017795          206 VAMAVAQVVMAFALLYYA--------IGWPGEIYVTTVLVGLSYGAHWAIVPAAASELFGLKSFGALYNFLTLASPAGSL  277 (366)
Q Consensus       206 ~~~~~~~~~~~~~~~l~~--------~~~~~~l~~~~~l~G~~~g~~~~~~~~~~se~f~~~~~g~~~g~~~~~~~~G~~  277 (366)
                      +. ....+...++...+.        ..+...+++..++.|++.|+.++..-++.+++.|+.+.+..+|+..+.+-..+.
T Consensus       352 l~-~~l~~~~~i~~~g~~G~~~~~~g~~~~~~f~~~a~~~G~~~G~~qs~sRs~~~~LiP~g~e~efFgly~i~gk~ss~  430 (477)
T PF11700_consen  352 LL-ISLILWIIIPLYGLFGFWPSFFGLKSPWEFWVLAVLIGLFMGGIQSASRSLFSRLIPPGREAEFFGLYAITGKASSW  430 (477)
T ss_pred             HH-HHHHHHHHHHHHHHHHhhhcccCcccHHHHHHHHHHHHHHhhhHHHHHHHHHHHhCCCchhhHHHHHHHHHHHHHHH
Confidence            11 211111122222221        455677889999999999999999999999999999999999999999999999


Q ss_pred             HhhhhHHHHHhhhhhhhhhhhhhhccCCCCCcccCCCCCCcccCCcchHHHHHHHHHHHHHHHHHHHHH
Q 017795          278 IFSGVIASGIYDYYAEKQAGLLWKYNGNMLPVSFRDQETPTCLGSICYSITCGIMAGLCIIAMVMSLIV  346 (366)
Q Consensus       278 i~gp~i~G~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~g~~~~~~~f~i~~~~~~~~~~~~~~~  346 (366)
                      + ||.+.|.+.|.++                               +.|..+..+.++.+++.++...+
T Consensus       431 l-GPll~g~i~~~tg-------------------------------~~r~g~~~l~~lf~~gl~ll~~v  467 (477)
T PF11700_consen  431 L-GPLLFGLITDATG-------------------------------SQRYGFLFLLVLFLIGLILLFFV  467 (477)
T ss_pred             H-HHHHHHHHHHHhC-------------------------------CchhHHHHHHHHHHHHHHHHhhc
Confidence            6 9999999999987                               48889988888888877766544

Atg22, Avt3 and Avt4 are partially redundant vacuolar effluxers, which mediate the efflux of leucine and other amino acids resulting from autophagy []. This family also includes other transporter proteins.

>TIGR00894 2A0114euk Na(+)-dependent inorganic phosphate cotransporter

Probab=99.31  E-value=1.8e-11  Score=122.78  Aligned_cols=144  Identities=11%  Similarity=0.090  Sum_probs=116.0

Q ss_pred             HhCCChhHH--HHHHHHHHHhhhhhhhhhhhhhhhhhccCchhHHHHHHHHHHHHHHHHHH---hcchhHHHHHHHHHHH
Q 017795          165 SLGYADTSI--YVSMISIWNFLGRVGGGYFSEAIVRKFAYPRPVAMAVAQVVMAFALLYYA---IGWPGEIYVTTVLVGL  239 (366)
Q Consensus       165 ~~g~~~~~~--~~sl~~i~~~~g~~~~G~lsD~~grr~~~~R~~~~~~~~~~~~~~~~l~~---~~~~~~l~~~~~l~G~  239 (366)
                      +++++....  +.+.+.++..++.+.+|+++||+|+|+..      ..+.++.+++.++..   ..+...+++.+++.|+
T Consensus        70 ~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~g~r~~l------~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~~~G~  143 (465)
T TIGR00894        70 NFKWSGALQGLILSSHFYGQIIIQIPVGYLAGKYVFKWSI------GIGMFLSSVISIVIPWAAGGGIALVVFCRVIQGL  143 (465)
T ss_pred             CCCCCHHHhhHHHHHHHHHHHHHHcchHHHHHHhCcchhh------HHHHHHHHHHHHHHHHHHHcCchHHHHHHHHHHH
Confidence            567766654  78888899999999999999999998765      555555555544432   2234567888999999


Q ss_pred             HhhhhhhhHHHHHHHhhCCCchhhHHHHHHhHhhhhHHHhhhhHHHHHhhhh-hhhhhhhhhhccCCCCCcccCCCCCCc
Q 017795          240 SYGAHWAIVPAAASELFGLKSFGALYNFLTLASPAGSLIFSGVIASGIYDYY-AEKQAGLLWKYNGNMLPVSFRDQETPT  318 (366)
Q Consensus       240 ~~g~~~~~~~~~~se~f~~~~~g~~~g~~~~~~~~G~~i~gp~i~G~l~d~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~  318 (366)
                      +.+..++....+++|.+++++++.+.++...+..+|..+ +|.+.+++.+.. +                          
T Consensus       144 ~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~i-~~~l~~~l~~~~~g--------------------------  196 (465)
T TIGR00894       144 AQGSVSPATHKIIVKWAPPKERSRLLGMSTSGFQLGTFI-FLPISGWLCESWGG--------------------------  196 (465)
T ss_pred             hcccchhhHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHhccCC--------------------------
Confidence            999999999999999999999999999999999999996 999999998874 5                          


Q ss_pred             ccCCcchHHHHHHHHHHHHHHHHHHHHHH
Q 017795          319 CLGSICYSITCGIMAGLCIIAMVMSLIVV  347 (366)
Q Consensus       319 c~g~~~~~~~f~i~~~~~~~~~~~~~~~~  347 (366)
                            |++.|++.+++.++..++.+.+.
T Consensus       197 ------w~~~f~i~~~~~~~~~~~~~~~~  219 (465)
T TIGR00894       197 ------WPMIFYVFGIVGCAWSLLWFVFP  219 (465)
T ss_pred             ------CCeehhhhhHHHHHHHHHHHHHh
Confidence                  99999998887766655554443

>TIGR00880 2_A_01_02 Multidrug resistance protein

Probab=99.30  E-value=2.8e-11  Score=99.31  Aligned_cols=131  Identities=11%  Similarity=0.169  Sum_probs=104.5

Q ss_pred             HHHHHHhhhhhhhhhhhhhhhhhccCchhHHHHHHHHHHHHHHHHHH-hcchhHHHHHHHHHHHHhhhhhhhHHHHHHHh
Q 017795          177 MISIWNFLGRVGGGYFSEAIVRKFAYPRPVAMAVAQVVMAFALLYYA-IGWPGEIYVTTVLVGLSYGAHWAIVPAAASEL  255 (366)
Q Consensus       177 l~~i~~~~g~~~~G~lsD~~grr~~~~R~~~~~~~~~~~~~~~~l~~-~~~~~~l~~~~~l~G~~~g~~~~~~~~~~se~  255 (366)
                      ...++..++.+..|+++||++||+..      ..+..+..++.++.. ..+...+.+..++.|++.+...+.....+.|.
T Consensus         6 ~~~~~~~~~~~~~g~~~d~~g~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~   79 (141)
T TIGR00880         6 GYALGQLIYSPLSGLLTDRFGRKPVL------LVGLFIFVLSTAMFALSSNITVLIIARFLQGFGAAFALVAGAALIADI   79 (141)
T ss_pred             eehhHHHHHHhhHHHHHhhcchhHHH------HHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHhHHHHHHHH
Confidence            45677888999999999999987654      445555555554444 34455667778889999998889999999999


Q ss_pred             hCCCchhhHHHHHHhHhhhhHHHhhhhHHHHHhhhhhhhhhhhhhhccCCCCCcccCCCCCCcccCCcchHHHHHHHHHH
Q 017795          256 FGLKSFGALYNFLTLASPAGSLIFSGVIASGIYDYYAEKQAGLLWKYNGNMLPVSFRDQETPTCLGSICYSITCGIMAGL  335 (366)
Q Consensus       256 f~~~~~g~~~g~~~~~~~~G~~i~gp~i~G~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~g~~~~~~~f~i~~~~  335 (366)
                      ++.++++...++.+....+|..+ +|.+.|.+.+..+                                |++.|++.+.+
T Consensus        80 ~~~~~~~~~~~~~~~~~~~g~~~-~~~~~~~~~~~~~--------------------------------~~~~~~~~~~~  126 (141)
T TIGR00880        80 YPPEERGVALGLMSAGIALGPLL-GPPLGGVLAQFLG--------------------------------WRAPFLFLAIL  126 (141)
T ss_pred             CChhhhhHHHHHHHHhHHHHHHH-hHHhHHHHhcccc--------------------------------hHHHHHHHHHH
Confidence            99999999999999999999996 9999999987766                                99999988877


Q ss_pred             HHHHHHHHHHH
Q 017795          336 CIIAMVMSLIV  346 (366)
Q Consensus       336 ~~~~~~~~~~~  346 (366)
                      ++++.+....+
T Consensus       127 ~~~~~~~~~~~  137 (141)
T TIGR00880       127 ALAAFILLAFL  137 (141)
T ss_pred             HHHHHHHHhhc
Confidence            77766655544

>KOG1330 consensus Sugar transporter/spinster transmembrane protein [Carbohydrate transport and metabolism]

Probab=99.30  E-value=2.1e-12  Score=125.74  Aligned_cols=175  Identities=15%  Similarity=0.191  Sum_probs=141.8

Q ss_pred             HHHHHHHHHhhhhHHHHHhcHHHHHHHhCCChhHH--HHHHHHHHHhhhhhhhhhhhhhhhhhccCchhHHHHHHHHHHH
Q 017795          139 LLLFFSLVLASGSGLTVIDNLGQICQSLGYADTSI--YVSMISIWNFLGRVGGGYFSEAIVRKFAYPRPVAMAVAQVVMA  216 (366)
Q Consensus       139 ~ll~~~~~~~~~~~~~~~~~l~~i~~~~g~~~~~~--~~sl~~i~~~~g~~~~G~lsD~~grr~~~~R~~~~~~~~~~~~  216 (366)
                      .++++........-+++...++.+.+.++.+++..  +.+.+.+...+..|+.|+++||+.||+.+      .++..+-.
T Consensus        36 ~il~~vnlmny~Dr~~iagv~~~v~~~fni~~s~~Gll~~vf~v~~~i~sPl~gyLadryNR~~v~------~vG~~iW~  109 (493)
T KOG1330|consen   36 VILCLVNLMNYADRYTIAGVLKEVQTYFNISDSELGLLQTVFIVVFMIASPLFGYLADRYNRKRVI------AVGIFIWT  109 (493)
T ss_pred             HHHHHHHHHHHhhhhhhhhhhHHHHHhcCCCchhccchhHHHHHHHHHHHHHHHHHHhhcCcceEE------eeHHHHHH
Confidence            34445555556666667777778888888887765  77788888999999999999999998877      66666666


Q ss_pred             HHHHHHHh-cchhHHHHHHHHHHHHhhhhhhhHHHHHHHhhCCCchhhHHHHHHhHhhhhHHHhhhhHHHHHhhhhhhhh
Q 017795          217 FALLYYAI-GWPGEIYVTTVLVGLSYGAHWAIVPAAASELFGLKSFGALYNFLTLASPAGSLIFSGVIASGIYDYYAEKQ  295 (366)
Q Consensus       217 ~~~~l~~~-~~~~~l~~~~~l~G~~~g~~~~~~~~~~se~f~~~~~g~~~g~~~~~~~~G~~i~gp~i~G~l~d~~~~~~  295 (366)
                      ++.+...+ ...+.+.+++.++|+|-+...++.+++++|.|+...|++.+++++.+.++|+.+ |-++++.+.+.++   
T Consensus       110 ~Av~~~~fs~~Fwq~~l~R~~vGiGeAs~~~ia~s~IaD~f~~~~Rs~~~~ify~~ipvGsgl-G~vvgs~va~~~~---  185 (493)
T KOG1330|consen  110 LAVFASGFSNHFWQVLLCRGFVGIGEASYSPIAPSLIADSFPDDKRSRVLGIFYFAIPVGSGL-GYVVGSVVASLTF---  185 (493)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhccchhhhcccchhHhhhcCcchhhhHHHHHhhhhcccccce-eEEeeeeeccCcc---
Confidence            66555553 445678899999999999999999999999999999999999999999999995 8777777777666   


Q ss_pred             hhhhhhccCCCCCcccCCCCCCcccCCcchHHHHHHHHHHHHHHHHHHHHHHhhcH
Q 017795          296 AGLLWKYNGNMLPVSFRDQETPTCLGSICYSITCGIMAGLCIIAMVMSLIVVHRTK  351 (366)
Q Consensus       296 ~~~~~~~~~~~~~~~~~~~~~~~c~g~~~~~~~f~i~~~~~~~~~~~~~~~~~~~r  351 (366)
                                                  .|||+|+..+++.++..++..++.++-+
T Consensus       186 ----------------------------~Wr~af~~~avl~vi~~~L~~~f~~eP~  213 (493)
T KOG1330|consen  186 ----------------------------WWRWAFRGSAVLGVIVGLLVFLFVREPE  213 (493)
T ss_pred             ----------------------------ceEEEEEeehHHHHHHHHHHHhhccCcc
Confidence                                        4999999999999998888877766533

>TIGR00882 2A0105 oligosaccharide:H+ symporter

Probab=99.30  E-value=1.6e-10  Score=113.32  Aligned_cols=179  Identities=11%  Similarity=0.111  Sum_probs=128.0

Q ss_pred             CHHHHhhhhHHHHHHHHHHHhhhhHHHHHhcHHHHHHHh----CCChhHH--HHHHHHHHHhhhhhhhhhhhhhhhhhcc
Q 017795          128 TLPQALMKADFLLLFFSLVLASGSGLTVIDNLGQICQSL----GYADTSI--YVSMISIWNFLGRVGGGYFSEAIVRKFA  201 (366)
Q Consensus       128 ~~~~~l~~~~~~ll~~~~~~~~~~~~~~~~~l~~i~~~~----g~~~~~~--~~sl~~i~~~~g~~~~G~lsD~~grr~~  201 (366)
                      +.++.++++++|.+.+..++..........+.+.+.++.    +.+....  ..++..+...++.+..|++.||+++|+.
T Consensus       207 ~~~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~g~~~~~~~i~~~~~~~~~g~l~~r~g~~~~  286 (396)
T TIGR00882       207 LALELFRQRKFWMFVLYVVGVACVYDVFDQQFANFFTSFFATPQQGTRVFGYVTTMGELLNALIMFCAPLIINRIGAKNA  286 (396)
T ss_pred             HHHHHHcCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchh
Confidence            467788899888766555444444344545677776654    3333222  5666677788888999999999998765


Q ss_pred             CchhHHHHHHHHHHHHHHHHHH-hcchhHHHHHHHHHHHHhhhhhhhHHHHHHHhhCCCchhhHHHH-HHhHhhhhHHHh
Q 017795          202 YPRPVAMAVAQVVMAFALLYYA-IGWPGEIYVTTVLVGLSYGAHWAIVPAAASELFGLKSFGALYNF-LTLASPAGSLIF  279 (366)
Q Consensus       202 ~~R~~~~~~~~~~~~~~~~l~~-~~~~~~l~~~~~l~G~~~g~~~~~~~~~~se~f~~~~~g~~~g~-~~~~~~~G~~i~  279 (366)
                      .      .++.++.+++..++. ..+...+++..++.|++.............+.++.+.+++..+. .+....+|+.+ 
T Consensus       287 l------~~~~~l~~l~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~at~~~~~~~~~~~lg~~~-  359 (396)
T TIGR00882       287 L------LIAGTIMSVRIIGSSFATTALEVVILKMLHAFEVPFLLVGCFKYITSQFDVRLSATIYLIGFQFAKQLAMIF-  359 (396)
T ss_pred             H------HHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCcceEEEeehHHHHHHHHHHHHH-
Confidence            4      555555665555544 44556666777778887766555556667788888888887776 56788899996 


Q ss_pred             hhhHHHHHhhhhhhhhhhhhhhccCCCCCcccCCCCCCcccCCcchHHHHHHHHHHHHHHHHHHHH
Q 017795          280 SGVIASGIYDYYAEKQAGLLWKYNGNMLPVSFRDQETPTCLGSICYSITCGIMAGLCIIAMVMSLI  345 (366)
Q Consensus       280 gp~i~G~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~g~~~~~~~f~i~~~~~~~~~~~~~~  345 (366)
                      +|.++|++.|..|                                |+.+|++.+++.++..+...+
T Consensus       360 ~~~l~G~l~~~~G--------------------------------~~~~f~~~~~~~~i~~~~~~~  393 (396)
T TIGR00882       360 LSTLAGNMYDSIG--------------------------------FQGAYLVLGCIVLLFTLISVF  393 (396)
T ss_pred             HHHhHHHHHHhcc--------------------------------cHHHHHHHHHHHHHHHHHHHH
Confidence            9999999999887                                999999999888777666543

>TIGR00899 2A0120 sugar efflux transporter

Probab=99.30  E-value=9.7e-11  Score=113.21  Aligned_cols=165  Identities=13%  Similarity=-0.004  Sum_probs=115.3

Q ss_pred             HHhhhhHHHHHhcHHHHH-HHhCCChhHH--HHHHHHHHHhhhhhhhhhhhhhhhhhccCchhHHHHHHHHHHHHHHHHH
Q 017795          146 VLASGSGLTVIDNLGQIC-QSLGYADTSI--YVSMISIWNFLGRVGGGYFSEAIVRKFAYPRPVAMAVAQVVMAFALLYY  222 (366)
Q Consensus       146 ~~~~~~~~~~~~~l~~i~-~~~g~~~~~~--~~sl~~i~~~~g~~~~G~lsD~~grr~~~~R~~~~~~~~~~~~~~~~l~  222 (366)
                      ++...+.......+|.+. +++|.+....  ..+.+.+...+..++.|+++||+|||+.+     +..+.++..++.+++
T Consensus         7 ~~~~~~~~~~~~~l~~~l~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~Dr~g~r~~~-----~~~~~~~~~~~~~~~   81 (375)
T TIGR00899         7 FLTGIAGALQFPTLSLFLSEEVRARPAMIGLFYTGSAIVGIAVSQLLATRSDYQGDRKGL-----ILFCCLLAALACLLF   81 (375)
T ss_pred             HHHHHHHHHHhhHHHHHHHcccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCchHH-----HHHHHHHHHHHHHHH
Confidence            333333344555666654 6789987765  67778888899999999999999986543     133344444444444


Q ss_pred             H-hcchhHHHHHHHHHHHHhhhhhhhHHHHHHHhhCCCchhhH--HHHHHhHhhhhHHHhhhhHHHHHhhhhhhhhhhhh
Q 017795          223 A-IGWPGEIYVTTVLVGLSYGAHWAIVPAAASELFGLKSFGAL--YNFLTLASPAGSLIFSGVIASGIYDYYAEKQAGLL  299 (366)
Q Consensus       223 ~-~~~~~~l~~~~~l~G~~~g~~~~~~~~~~se~f~~~~~g~~--~g~~~~~~~~G~~i~gp~i~G~l~d~~~~~~~~~~  299 (366)
                      + ..+...+++..++.|.+.+...+...+...|..+.+.++..  .+.......+|..+ ||.++|++.+..+       
T Consensus        82 ~~~~~~~~l~~~~~~~g~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i-g~~~~~~l~~~~~-------  153 (375)
T TIGR00899        82 AWNRNYFLLLVLGVLLSSFASTANPQLFALAREHADRTGREAVMFSSVMRAQISLAWVI-GPPLAFWLALGFG-------  153 (375)
T ss_pred             HhcchHHHHHHHHHHHHhhhhhhHHHHHHHHHHHhhhcchhhHHHHHHHHHHHhHHHHH-hhhHHHHHHHhcc-------
Confidence            4 34445566667777766666667667777888776666543  57777788899986 9999999988776       


Q ss_pred             hhccCCCCCcccCCCCCCcccCCcchHHHHHHHHHHHHHHHHHHHHHHh
Q 017795          300 WKYNGNMLPVSFRDQETPTCLGSICYSITCGIMAGLCIIAMVMSLIVVH  348 (366)
Q Consensus       300 ~~~~~~~~~~~~~~~~~~~c~g~~~~~~~f~i~~~~~~~~~~~~~~~~~  348 (366)
                                               |++.|++.+.++++..++.+.+.+
T Consensus       154 -------------------------~~~~f~~~~~~~~~~~~~~~~~~~  177 (375)
T TIGR00899       154 -------------------------FTVMFLTAALAFVLCGVLVWLFLP  177 (375)
T ss_pred             -------------------------cHHHHHHHHHHHHHHHHHHHHhCC
Confidence                                     999999998877776666555444

This family of proteins is an efflux system for lactose, glucose, aromatic glucosides and galactosides, cellobiose, maltose, a-methyl glucoside and other sugar compounds. They are found in both gram-negative and gram-postitive bacteria.

>PRK11128 putative 3-phenylpropionic acid transporter; Provisional

Probab=99.30  E-value=2.1e-10  Score=112.08  Aligned_cols=158  Identities=11%  Similarity=-0.003  Sum_probs=114.8

Q ss_pred             CCHHHHhhhhHHHHHHHHHHHhhhhHHHHHhcHHHHHHHhCCChhHH--HHHHHHHHHhhhhhhhhhhhhhhhhhccCch
Q 017795          127 FTLPQALMKADFLLLFFSLVLASGSGLTVIDNLGQICQSLGYADTSI--YVSMISIWNFLGRVGGGYFSEAIVRKFAYPR  204 (366)
Q Consensus       127 ~~~~~~l~~~~~~ll~~~~~~~~~~~~~~~~~l~~i~~~~g~~~~~~--~~sl~~i~~~~g~~~~G~lsD~~grr~~~~R  204 (366)
                      .++++.++++.+|.+.+..++.......+...+|.+.++.|++....  ..++..+...++.++.|++.||+++|+..  
T Consensus       196 ~~~~~i~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~~r~~~~~~l--  273 (382)
T PRK11128        196 PAWKALLKEPTVWRFLLCVSLLQGSHAAYYGFSAIYWQAAGYSASTIGYLWSLGVVAEVLIFAFSNRLFRRWSARDLL--  273 (382)
T ss_pred             chHHHHHcChhHHHHHHHHHHHHHHhHhHHHHHHHHHHHCCCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHH--
Confidence            46788999999998777666655555556667788888889887654  55566677777888888888888876544  


Q ss_pred             hHHHHHHHHHHHHHHHHHH-hcchhHHHHHHHHHHHHhhhhhhhHHHHHHHhhCCCchhhHHHHHH-hHhhhhHHHhhhh
Q 017795          205 PVAMAVAQVVMAFALLYYA-IGWPGEIYVTTVLVGLSYGAHWAIVPAAASELFGLKSFGALYNFLT-LASPAGSLIFSGV  282 (366)
Q Consensus       205 ~~~~~~~~~~~~~~~~l~~-~~~~~~l~~~~~l~G~~~g~~~~~~~~~~se~f~~~~~g~~~g~~~-~~~~~G~~i~gp~  282 (366)
                          ..+.++.+++.+++. ..++..+++..++.|++.+...+....++.+. +.+++++..+..+ ....+|..+ ||.
T Consensus       274 ----~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~g~~i-g~~  347 (382)
T PRK11128        274 ----LLSAICGVVRWGLMGSTTALPWLIVIQILHCGTFTVCHLAAMRYIAAR-PGSEVIRLQALYSALAMGGSIAI-MTV  347 (382)
T ss_pred             ----HHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHC-CHhhhHHHHHHHHHHHHHHHHHH-HHH
Confidence                556666666655554 44455667778888988887666666666665 5566788888876 445667675 999


Q ss_pred             HHHHHhhhhh
Q 017795          283 IASGIYDYYA  292 (366)
Q Consensus       283 i~G~l~d~~~  292 (366)
                      ++|.++|..+
T Consensus       348 i~G~l~~~~g  357 (382)
T PRK11128        348 LSGFLYQHLG  357 (382)
T ss_pred             HHHHHHHhcc
Confidence            9999999887

>PRK10406 alpha-ketoglutarate transporter; Provisional

Probab=99.29  E-value=1.7e-10  Score=114.79  Aligned_cols=137  Identities=14%  Similarity=0.039  Sum_probs=98.2

Q ss_pred             HHHHhhhhHHHHHhcHHHHHHHhC---CChhHH-----HHHHHHHHHhhhhhhhhhhhhhhhhhccCchhHHHHHHHHHH
Q 017795          144 SLVLASGSGLTVIDNLGQICQSLG---YADTSI-----YVSMISIWNFLGRVGGGYFSEAIVRKFAYPRPVAMAVAQVVM  215 (366)
Q Consensus       144 ~~~~~~~~~~~~~~~l~~i~~~~g---~~~~~~-----~~sl~~i~~~~g~~~~G~lsD~~grr~~~~R~~~~~~~~~~~  215 (366)
                      +.++-......+....|.+.++++   .+..+.     ..+...++..+|.+++|+++||+|||+.+      ..+.+++
T Consensus        30 ~~~~~~~d~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ig~~~~G~l~Dr~Grr~~l------~~~~~~~  103 (432)
T PRK10406         30 GNLVEWFDFYVYSFCSLYFAHIFFPSGNTTTQLLQTAGVFAAGFLMRPIGGWLFGRIADKHGRKKSM------LISVCMM  103 (432)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHH------HHHHHHH
Confidence            344444444455566777788874   333321     33444555668899999999999998766      6667777


Q ss_pred             HHHHHHHHh-cch--------hHHHHHHHHHHHHhhhhhhhHHHHHHHhhCCCchhhHHHHHHhHhhhhHHHhhhhHHHH
Q 017795          216 AFALLYYAI-GWP--------GEIYVTTVLVGLSYGAHWAIVPAAASELFGLKSFGALYNFLTLASPAGSLIFSGVIASG  286 (366)
Q Consensus       216 ~~~~~l~~~-~~~--------~~l~~~~~l~G~~~g~~~~~~~~~~se~f~~~~~g~~~g~~~~~~~~G~~i~gp~i~G~  286 (366)
                      +++.++.+. .+.        ..+++++++.|++.|+.++...++++|.+++++||...++.......|..+ ++.+.+.
T Consensus       104 ~~~~~~~~~~~~~~~~~~~~~~~l~~~R~l~G~g~g~~~~~~~~~i~e~~p~~~rg~~~~~~~~~~~~G~~~-~~~~~~~  182 (432)
T PRK10406        104 CFGSLVIACLPGYETIGTWAPALLLLARLFQGLSVGGEYGTSATYMSEVAVEGRKGFYASFQYVTLIGGQLL-ALLVVVV  182 (432)
T ss_pred             HHHHHHHhhcCCchhHHHHHHHHHHHHHHHHHhhhhhhHhhHHHHHHHhCCCCcccHHHHHHHHHHHHHHHH-HHHHHHH
Confidence            666666543 222        257789999999999999999999999999999999999887777777774 6655444


Q ss_pred             H
Q 017795          287 I  287 (366)
Q Consensus       287 l  287 (366)
                      +
T Consensus       183 ~  183 (432)
T PRK10406        183 L  183 (432)
T ss_pred             H
Confidence            3

>PRK15011 sugar efflux transporter B; Provisional

Probab=99.29  E-value=2.7e-10  Score=111.85  Aligned_cols=157  Identities=17%  Similarity=0.131  Sum_probs=108.2

Q ss_pred             hhhhHHHHHhcHHHHHH-HhCCChhHH--HHHHHHHHHhhhhhhhhhhhhhhhhhccCchhHHHHHHHHHHHHHHHHHH-
Q 017795          148 ASGSGLTVIDNLGQICQ-SLGYADTSI--YVSMISIWNFLGRVGGGYFSEAIVRKFAYPRPVAMAVAQVVMAFALLYYA-  223 (366)
Q Consensus       148 ~~~~~~~~~~~l~~i~~-~~g~~~~~~--~~sl~~i~~~~g~~~~G~lsD~~grr~~~~R~~~~~~~~~~~~~~~~l~~-  223 (366)
                      .......+..++|.+.+ ++|++....  ..+...+...++++++|+++||++||+..      ..+.+...+....+. 
T Consensus       228 ~~~~~~~~~~~~p~~l~~~~~~~~~~~g~~~~~~~~~~i~~~~~~G~l~dr~g~~~~~------~~~~~~~~~~~~~~~~  301 (393)
T PRK15011        228 MWGTNSLYIINMPLFIINELHLPEKLAGVMMGTAAGLEIPTMLIAGYFAKRLGKRFLM------RVAAVAGVCFYAGMLM  301 (393)
T ss_pred             HHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhChHHHH------HHHHHHHHHHHHHHHH
Confidence            33333445567887764 578887654  55555667788899999999999987533      222222222222222 


Q ss_pred             hcchhHHHHHHHHHHHHhhhhhhhHHHHHHHhhCCCchhhHHHHHHhHhhhhHHHhhhhHHHHHhhhhhhhhhhhhhhcc
Q 017795          224 IGWPGEIYVTTVLVGLSYGAHWAIVPAAASELFGLKSFGALYNFLTLASPAGSLIFSGVIASGIYDYYAEKQAGLLWKYN  303 (366)
Q Consensus       224 ~~~~~~l~~~~~l~G~~~g~~~~~~~~~~se~f~~~~~g~~~g~~~~~~~~G~~i~gp~i~G~l~d~~~~~~~~~~~~~~  303 (366)
                      ..++...++..++.+++.|...+..+....|.+|. ++|++.++.+....+|..+ +|.++|.++|..+           
T Consensus       302 ~~~~~~~l~~~~l~~~~~g~~~~~~~~~~~~~~p~-~~g~~~~~~~~~~~lg~~~-g~~l~G~i~~~~g-----------  368 (393)
T PRK15011        302 AHSPAILLGLQLLNAIYIGILGGIGMLYFQDLMPG-QAGSATTLYTNTSRVGWII-AGSLAGIVAEIWN-----------  368 (393)
T ss_pred             HhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCC-CcchHHHHHHHHHHHHHHH-HHHHHHHHHHHhh-----------
Confidence            33344445555666666666666677778898874 5999999998888999996 9999999999877           


Q ss_pred             CCCCCcccCCCCCCcccCCcchHHHHHHHHHHHHHHHHHHH
Q 017795          304 GNMLPVSFRDQETPTCLGSICYSITCGIMAGLCIIAMVMSL  344 (366)
Q Consensus       304 ~~~~~~~~~~~~~~~c~g~~~~~~~f~i~~~~~~~~~~~~~  344 (366)
                                           |+..|++.+++++++.++.+
T Consensus       369 ---------------------~~~~~~~~~~~~~~~~~~~~  388 (393)
T PRK15011        369 ---------------------YHAVFWFALVMIIATLFCLL  388 (393)
T ss_pred             ---------------------hHHHHHHHHHHHHHHHHHHH
Confidence                                 99999887777766555544

>TIGR01272 gluP glucose/galactose transporter

Probab=99.29  E-value=1.9e-10  Score=109.80  Aligned_cols=153  Identities=13%  Similarity=0.098  Sum_probs=114.3

Q ss_pred             HHhhhhHHHHHHHHHHHhhhhHHHHHhcHHHHHHH---hCCChhHH--HHHHHHHHHhhhhhhhhhhhhhhhhhccCchh
Q 017795          131 QALMKADFLLLFFSLVLASGSGLTVIDNLGQICQS---LGYADTSI--YVSMISIWNFLGRVGGGYFSEAIVRKFAYPRP  205 (366)
Q Consensus       131 ~~l~~~~~~ll~~~~~~~~~~~~~~~~~l~~i~~~---~g~~~~~~--~~sl~~i~~~~g~~~~G~lsD~~grr~~~~R~  205 (366)
                      ..++++.+|+..++.++..+...++.+|++.+..+   +|++....  ..+.+..+.++||++.++++||+++|+..   
T Consensus       135 ~~~~~~~~~l~~~~~f~yvg~e~~~~~w~~~yl~~~~~~g~s~~~a~~~~s~~~~~~~iGr~~~~~l~~r~g~~~~l---  211 (310)
T TIGR01272       135 SAFQFTHLVLGALGIFVYVGAEVSAGSFLVNFLSDPHALGLPEDQAAHFTAYTWGGAMVGRFIGSAVMPMISQGRYL---  211 (310)
T ss_pred             hHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCHHHHH---
Confidence            46678889988888888888888889999999975   47876655  78888889999999999999999876543   


Q ss_pred             HHHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHhhhhhhhHHHHHHHhhCCCchhhHHHHHHhHhhhhHHHhhhhHHH
Q 017795          206 VAMAVAQVVMAFALLYYAIGWPGEIYVTTVLVGLSYGAHWAIVPAAASELFGLKSFGALYNFLTLASPAGSLIFSGVIAS  285 (366)
Q Consensus       206 ~~~~~~~~~~~~~~~l~~~~~~~~l~~~~~l~G~~~g~~~~~~~~~~se~f~~~~~g~~~g~~~~~~~~G~~i~gp~i~G  285 (366)
                         .++.++.+++.+++...+.....+..+++|++.+..++...+...+.++.+ .+++.++. ..+.+|+.+ .|.+.|
T Consensus       212 ---~~~~~l~~~~~~l~~~~~~~~~~~~~~l~g~~~s~i~P~~~s~a~~~~~~~-~~~asai~-~~~~~Gg~i-~P~l~G  285 (310)
T TIGR01272       212 ---AFNAFLAVLLSIGAALTHGYVAMWFVLALGLFNSIMFPTIFSLALNALGRH-TSQGSGIL-CLAIVGGAI-VPLLQG  285 (310)
T ss_pred             ---HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhh-hhhhHHHH-HHHHhcchH-HHHHHH
Confidence               344444444444333322233344666789999999999888888888653 45566665 456688886 899999


Q ss_pred             HHhhhhh
Q 017795          286 GIYDYYA  292 (366)
Q Consensus       286 ~l~d~~~  292 (366)
                      .+.|..+
T Consensus       286 ~lad~~g  292 (310)
T TIGR01272       286 SLADCLG  292 (310)
T ss_pred             HHHHhcc
Confidence            9999877

Disruption of the loci leads to the total loss of glucose or galactose uptake in E.coli. Putative transporters in other bacterial species were isolated by functional complementation, which restored it functional activity.

>PRK09952 shikimate transporter; Provisional

Probab=99.29  E-value=4.1e-10  Score=112.41  Aligned_cols=145  Identities=16%  Similarity=0.040  Sum_probs=100.4

Q ss_pred             HHHHHHHHHHhhhhHHHHHhcHHHH-HHHh--CCChhHHHH------HHHHHHHhhhhhhhhhhhhhhhhhccCchhHHH
Q 017795          138 FLLLFFSLVLASGSGLTVIDNLGQI-CQSL--GYADTSIYV------SMISIWNFLGRVGGGYFSEAIVRKFAYPRPVAM  208 (366)
Q Consensus       138 ~~ll~~~~~~~~~~~~~~~~~l~~i-~~~~--g~~~~~~~~------sl~~i~~~~g~~~~G~lsD~~grr~~~~R~~~~  208 (366)
                      ++..++..++-......+....|.+ .+++  +.++.....      ++..++..+|.++.|+++||+|||+.+      
T Consensus        24 ~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~G~l~Dr~Grr~~l------   97 (438)
T PRK09952         24 ALGSFAGAVVDWYDFLLYGITAALVFNREFFPQVSPAMGTLAAFATFGVGFLFRPLGGVVFGHFGDRLGRKRML------   97 (438)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHhhccHHHH------
Confidence            4444455555444444444444443 3444  455443211      233455667888899999999998765      


Q ss_pred             HHHHHHHHHHHHHHHhc-chh--------HHHHHHHHHHHHhhhhhhhHHHHHHHhhCCCchhhHHHHHHhHhhhhHHHh
Q 017795          209 AVAQVVMAFALLYYAIG-WPG--------EIYVTTVLVGLSYGAHWAIVPAAASELFGLKSFGALYNFLTLASPAGSLIF  279 (366)
Q Consensus       209 ~~~~~~~~~~~~l~~~~-~~~--------~l~~~~~l~G~~~g~~~~~~~~~~se~f~~~~~g~~~g~~~~~~~~G~~i~  279 (366)
                      ..+.++.+++.++.+.. +..        .+++++++.|++.|+.++....+++|.+|+++||...+....+..+|..+ 
T Consensus        98 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~R~l~G~~~g~~~~~~~~~~~e~~p~~~rg~~~~~~~~g~~~G~~l-  176 (438)
T PRK09952         98 MLTVWMMGIATALIGLLPSFSTIGWWAPVLLVTLRAIQGFAVGGEWGGAALLAVESAPKNKKAFYSSGVQVGYGVGLLL-  176 (438)
T ss_pred             HHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHHHHhhhcccHHHHHHHHHHhCCCCCCcHHHHHHHHHHHHHHHH-
Confidence            66777777776666533 322        36778999999999999988999999999999999999999888888885 


Q ss_pred             hhhHHHHHhh
Q 017795          280 SGVIASGIYD  289 (366)
Q Consensus       280 gp~i~G~l~d  289 (366)
                      ++.+.+.+..
T Consensus       177 ~~~~~~~l~~  186 (438)
T PRK09952        177 STGLVSLISM  186 (438)
T ss_pred             HHHHHHHHHH
Confidence            7766666553

>TIGR00885 fucP L-fucose:H+ symporter permease

Probab=99.28  E-value=2.5e-10  Score=113.06  Aligned_cols=145  Identities=13%  Similarity=0.006  Sum_probs=115.8

Q ss_pred             HHHHHHHHHHhhhhHHHHHhcHHHHHHHhCCChhHH--HHHHHHHHHhhhhhhhhhhhhhhhhhccCchhHHHHHHHHHH
Q 017795          138 FLLLFFSLVLASGSGLTVIDNLGQICQSLGYADTSI--YVSMISIWNFLGRVGGGYFSEAIVRKFAYPRPVAMAVAQVVM  215 (366)
Q Consensus       138 ~~ll~~~~~~~~~~~~~~~~~l~~i~~~~g~~~~~~--~~sl~~i~~~~g~~~~G~lsD~~grr~~~~R~~~~~~~~~~~  215 (366)
                      ++++...++............+|++.+++|.+..+.  ..+...++..++.+..|++.||+|||+..      ..+.+++
T Consensus         5 ~~~~~~~f~~~G~~~~~~~~l~~~~~~~~~~s~~~~g~l~s~~~~g~~i~~~~~g~l~~r~G~r~~~------~~g~~l~   78 (410)
T TIGR00885         5 FALITSLFALWGFANDITNPMVPQFQQAFTLTAFQAALVQSAFYGGYFIMAIPAAIFMKKLSYKAGI------LLGLFLY   78 (410)
T ss_pred             HHHHHHHHHHHHHHHHhHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCchHHH------HHHHHHH
Confidence            455555555444443444567888989999988776  78888899999999999999999998766      7777777


Q ss_pred             HHHHHHHHh----cchhHHHHHHHHHHHHhhhhhhhHHHHHHHhhCCCchhhHHHHHHhHhhhhHHHhhhhHHHHHhh
Q 017795          216 AFALLYYAI----GWPGEIYVTTVLVGLSYGAHWAIVPAAASELFGLKSFGALYNFLTLASPAGSLIFSGVIASGIYD  289 (366)
Q Consensus       216 ~~~~~l~~~----~~~~~l~~~~~l~G~~~g~~~~~~~~~~se~f~~~~~g~~~g~~~~~~~~G~~i~gp~i~G~l~d  289 (366)
                      +++.+++..    .+...+++..++.|+|.|...+...+++.+..++++++...++.+....+|+.+ ||.+++.+..
T Consensus        79 ~~g~~l~~~~~~~~~~~~~l~~~~l~G~g~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lG~~~-g~~i~~~l~~  155 (410)
T TIGR00885        79 ALGAFLFWPAAEIMNYTLFLVGLFILTAGLGFLETAANPYILVMGPESTATRRLNLAQSFNPFGSII-GMVVAQQLIL  155 (410)
T ss_pred             HHHHHHHHHHHhhccHHHHHHHHHHHHhhHHHHHhhhhHHHHHHCCHhHHHHHHHHHHHHHHHHHHH-HHHHHHHHHh
Confidence            777766432    244567788889999999999888889999998889999999999999999996 9999988764

This family describes the L-fucose permease in bacteria. L-fucose(6-deoxy-L-galactose) is a monosaccharide found in glycoproteins and cell wall polysaccharides. L-fucose is used in bacteria through an inducible pathway mediated by atleast four enzymes: a permease, isomerase, kinase and an aldolase which are encoded by fucP, fucI, fucK, fucA respectively. The fuc genes belong to a regulon comprising of four linked operons: fucO, fucA, fucPIK and fucR. The positive regulator is encoded by fucR, whose protein responds to fuculose-1-phosphate, which acts as an effector.

>TIGR00900 2A0121 H+ Antiporter protein

Probab=99.27  E-value=1.6e-10  Score=110.55  Aligned_cols=157  Identities=15%  Similarity=0.093  Sum_probs=117.7

Q ss_pred             HHHHhhhhHHHHHHHHHHHhhhhHHHHH-hcHHHHHHH-hCCChhHH--HHHHHHHHHhhhhhhhhhhhhhhhhhccCch
Q 017795          129 LPQALMKADFLLLFFSLVLASGSGLTVI-DNLGQICQS-LGYADTSI--YVSMISIWNFLGRVGGGYFSEAIVRKFAYPR  204 (366)
Q Consensus       129 ~~~~l~~~~~~ll~~~~~~~~~~~~~~~-~~l~~i~~~-~g~~~~~~--~~sl~~i~~~~g~~~~G~lsD~~grr~~~~R  204 (366)
                      +++.++++.+|.+.+..++......... .+.|.+.++ +|++..+.  ..+...++..+++++.|+++||++||+..  
T Consensus       203 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~--  280 (365)
T TIGR00900       203 IKFVLKNPLLRTLLLLALLFNLVFAPAIVALFPYVQSKYLGRGSTHYGWVLAAFGLGALLGALLLGLLGRYFKRMALM--  280 (365)
T ss_pred             HHHHHcCcHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhchhHHH--
Confidence            3455677777776666555555444444 678888876 78877655  67777888899999999999999876543  


Q ss_pred             hHHHHHHHHHHHHHHHHHHh-c-chhHHHHHHHHHHHHhhhhhhhHHHHHHHhhCCCchhhHHHHHHhHhhhhHHHhhhh
Q 017795          205 PVAMAVAQVVMAFALLYYAI-G-WPGEIYVTTVLVGLSYGAHWAIVPAAASELFGLKSFGALYNFLTLASPAGSLIFSGV  282 (366)
Q Consensus       205 ~~~~~~~~~~~~~~~~l~~~-~-~~~~l~~~~~l~G~~~g~~~~~~~~~~se~f~~~~~g~~~g~~~~~~~~G~~i~gp~  282 (366)
                          ..+..+.+++.+++.. . +...+++..++.|++.+...+...+++.|.+|++++|+.+++.+....+|..+ +|.
T Consensus       281 ----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~-g~~  355 (365)
T TIGR00900       281 ----TGAIFVIGLAILVVGLTPPNFPLFLVLWFAIGVGYGPINVPQGTLLQRRVPAELLGRVFGAQFSLSHAAWPL-GLI  355 (365)
T ss_pred             ----HHHHHHHHHHHHHHHhhchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHH-HHH
Confidence                4444444544444442 2 24455677788899998888888899999999999999999999999999996 999


Q ss_pred             HHHHHhhhhh
Q 017795          283 IASGIYDYYA  292 (366)
Q Consensus       283 i~G~l~d~~~  292 (366)
                      ++|.+.|..|
T Consensus       356 ~~g~l~~~~g  365 (365)
T TIGR00900       356 LAGPLADHLG  365 (365)
T ss_pred             HHHHHHHHcC
Confidence            9999998653

>PRK15075 citrate-proton symporter; Provisional

Probab=99.27  E-value=3e-10  Score=113.09  Aligned_cols=154  Identities=12%  Similarity=0.090  Sum_probs=98.9

Q ss_pred             HhhhhHHHHHH-HHHHHhhhhHHHHHhcHHHHHHH-hCCChhHH--HHHHHHHHHhhhhhhhhhhhhhhhhhccCchhHH
Q 017795          132 ALMKADFLLLF-FSLVLASGSGLTVIDNLGQICQS-LGYADTSI--YVSMISIWNFLGRVGGGYFSEAIVRKFAYPRPVA  207 (366)
Q Consensus       132 ~l~~~~~~ll~-~~~~~~~~~~~~~~~~l~~i~~~-~g~~~~~~--~~sl~~i~~~~g~~~~G~lsD~~grr~~~~R~~~  207 (366)
                      ..++++.|... +..++..........++|.+.++ +|++..+.  ...++.+++.++++++|+++||++||+..     
T Consensus       233 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~Dr~g~r~~~-----  307 (434)
T PRK15075        233 LAANWRIVLAGMLMVAMTTVSFYLITVYTPTFGKTVLHLSAADSLLVTLCVGVSNFIWLPIGGALSDRIGRRPVL-----  307 (434)
T ss_pred             HHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHH-----
Confidence            34455555443 22333334445567789998876 79987655  55667788899999999999999987543     


Q ss_pred             HHHHHHHHHH-HHHH--HHhcch--hHHHHHHHHHHHHhhhhhhhHHHHHHHhhCCCchhhHHHHHHhHh-hhhHHHhhh
Q 017795          208 MAVAQVVMAF-ALLY--YAIGWP--GEIYVTTVLVGLSYGAHWAIVPAAASELFGLKSFGALYNFLTLAS-PAGSLIFSG  281 (366)
Q Consensus       208 ~~~~~~~~~~-~~~l--~~~~~~--~~l~~~~~l~G~~~g~~~~~~~~~~se~f~~~~~g~~~g~~~~~~-~~G~~i~gp  281 (366)
                       ..+.++.++ +...  .....+  ..+.+..++.+++.+...+..+.+++|.+|++.++++.++.+... .+++.+ +|
T Consensus       308 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~e~~p~~~rg~~~g~~~~~~~~~~g~~-~p  385 (434)
T PRK15075        308 -IAFTVLAILTAYPALSWLVAAPSFARMLAVELWLSFLYGSYNGAMVVALTEVMPAEVRTAGFSLAYSLATAIFGGF-TP  385 (434)
T ss_pred             -HHHHHHHHHHHHHHHHHHHcCCchHHHHHHHHHHHHHHHHHHhhHHHHHHHHCCCCccchheeHHHHHHHHHHhhh-HH
Confidence             222222111 1111  111122  223333445566766666667788899999999999999865444 445675 89


Q ss_pred             hHHHHHhhhhh
Q 017795          282 VIASGIYDYYA  292 (366)
Q Consensus       282 ~i~G~l~d~~~  292 (366)
                      .+.|++.|..+
T Consensus       386 ~~~g~i~~~~g  396 (434)
T PRK15075        386 AISTWLIHVTG  396 (434)
T ss_pred             HHHHHHHHhcC
Confidence            99999999876

>TIGR00882 2A0105 oligosaccharide:H+ symporter

Probab=99.27  E-value=1.3e-10  Score=114.02  Aligned_cols=172  Identities=15%  Similarity=0.125  Sum_probs=117.8

Q ss_pred             hhHHHHHHHHHHHhhhhHHHHHhcHHHHHH-HhCCChhHH--HHHHHHHHHhhhhhhhhhhhhhhhhhccCchhHHHHHH
Q 017795          135 KADFLLLFFSLVLASGSGLTVIDNLGQICQ-SLGYADTSI--YVSMISIWNFLGRVGGGYFSEAIVRKFAYPRPVAMAVA  211 (366)
Q Consensus       135 ~~~~~ll~~~~~~~~~~~~~~~~~l~~i~~-~~g~~~~~~--~~sl~~i~~~~g~~~~G~lsD~~grr~~~~R~~~~~~~  211 (366)
                      ++++|.+...+++.......+..++|.+.+ ++|++..+.  ..++..+...++++.+|+++||+|||+...   .....
T Consensus         1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~l~~~i~~~~~G~l~Dr~grr~~~~---~~~~~   77 (396)
T TIGR00882         1 NTNFWMFGLFFFLYFFIMSAYFPFFPIWLHDVNGLSKTDTGIVFSCISLFSILFQPLFGLISDKLGLKKHLL---WIISG   77 (396)
T ss_pred             ChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcHHHHH---HHHHH
Confidence            468898888888887777777778888765 579988776  899999999999999999999999987651   11111


Q ss_pred             HHHHHHHHHHHHhcc------hhHHHHHHHHHHHHhhhhhhhHHHHHHHhhCCCchhhHHHHHHhHhhhhHHHhhhhHHH
Q 017795          212 QVVMAFALLYYAIGW------PGEIYVTTVLVGLSYGAHWAIVPAAASELFGLKSFGALYNFLTLASPAGSLIFSGVIAS  285 (366)
Q Consensus       212 ~~~~~~~~~l~~~~~------~~~l~~~~~l~G~~~g~~~~~~~~~~se~f~~~~~g~~~g~~~~~~~~G~~i~gp~i~G  285 (366)
                      ..+.......+....      ....++..++.|++.+...+....+..+.-  ++.+..+|.......+|..+ ||.++|
T Consensus        78 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~--~~~~~~~g~~~~~~~~g~~~-g~~~~g  154 (396)
T TIGR00882        78 LLVLFAPFFIYVFGPLLQSNILVGAIVGGLYLGFVFSAGAGAIEAYIEKVS--RNSNFEYGKARMFGCVGWAL-CASIAG  154 (396)
T ss_pred             HHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhccchhhHHHHHHHhh--hhcccccchhhhhcccHHHH-HHHHHh
Confidence            111111111111111      112344456677777776666666666642  33456777777888899996 999999


Q ss_pred             HHhhhhhhhhhhhhhhccCCCCCcccCCCCCCcccCCcchHHHHHHHHHHHHHHHHHHHH
Q 017795          286 GIYDYYAEKQAGLLWKYNGNMLPVSFRDQETPTCLGSICYSITCGIMAGLCIIAMVMSLI  345 (366)
Q Consensus       286 ~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~g~~~~~~~f~i~~~~~~~~~~~~~~  345 (366)
                      .+.+. +                                |+..|++.+++.++.+++.+.
T Consensus       155 ~l~~~-~--------------------------------~~~~f~~~~~~~~~~~~~~~~  181 (396)
T TIGR00882       155 ILFSI-D--------------------------------PQIVFWLGSGFALILMLLLMF  181 (396)
T ss_pred             hhhcc-C--------------------------------chHHHHHHHHHHHHHHHHHHH
Confidence            88753 4                                899999888877776655543

>PRK10091 MFS transport protein AraJ; Provisional

Probab=99.27  E-value=2.8e-10  Score=111.32  Aligned_cols=177  Identities=18%  Similarity=0.113  Sum_probs=112.4

Q ss_pred             HHHhhhhHHHHHHHHHHHhhhhHHHHHhcHHHHH-HHhCCChhHH--HHHHHHHHHhhhhhhhhhhhhhhhhhccCchhH
Q 017795          130 PQALMKADFLLLFFSLVLASGSGLTVIDNLGQIC-QSLGYADTSI--YVSMISIWNFLGRVGGGYFSEAIVRKFAYPRPV  206 (366)
Q Consensus       130 ~~~l~~~~~~ll~~~~~~~~~~~~~~~~~l~~i~-~~~g~~~~~~--~~sl~~i~~~~g~~~~G~lsD~~grr~~~~R~~  206 (366)
                      .+.++++.+|.++...++..........+++.+. +.+|++....  +.++..++..+++++.|+++||+++|+..    
T Consensus       193 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~~~~~~~~~~~~~ig~~~~g~l~~r~~~~~~~----  268 (382)
T PRK10091        193 FHFLRSPAPWLIFAATMFGNAGVFAWFSYIKPYMMFISGFSETSMTFIMMLVGLGMVLGNLLSGRLSGRYSPLRIA----  268 (382)
T ss_pred             HHHhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHhHHHheeccccCchhHH----
Confidence            3566788888776665554443333334445444 4578887665  67888899999999999999999886544    


Q ss_pred             HHHHHHHHHHHHHHHHH--hcchhHHHHHHHHHHHHhhhhhhhHH-HHHHHhhCCCchhhHHHHHHhHhhhhHHHhhhhH
Q 017795          207 AMAVAQVVMAFALLYYA--IGWPGEIYVTTVLVGLSYGAHWAIVP-AAASELFGLKSFGALYNFLTLASPAGSLIFSGVI  283 (366)
Q Consensus       207 ~~~~~~~~~~~~~~l~~--~~~~~~l~~~~~l~G~~~g~~~~~~~-~~~se~f~~~~~g~~~g~~~~~~~~G~~i~gp~i  283 (366)
                        ..+..+++++.+++.  ..+.....+..++.+.+.++..+... ....+..+.+..+.+.  .+....+|..+ ||.+
T Consensus       269 --~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~g~~~-Gp~~  343 (382)
T PRK10091        269 --AVTDFIIVLALLMLFFFGGMKTASLIFAFICCAGLFALSAPLQILLLQNAKGGELLGAAG--GQIAFNLGSAI-GAYC  343 (382)
T ss_pred             --HHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhhhHHHHHHHHHhCCcchHHHHHH--HHHHHHHHHHH-HHHH
Confidence              444555555544432  22233334444455555444333333 3444545555565543  35567889996 9999


Q ss_pred             HHHHhhhhhhhhhhhhhhccCCCCCcccCCCCCCcccCCcchHHHHHHHHHHHHHHHHHHHHH
Q 017795          284 ASGIYDYYAEKQAGLLWKYNGNMLPVSFRDQETPTCLGSICYSITCGIMAGLCIIAMVMSLIV  346 (366)
Q Consensus       284 ~G~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~g~~~~~~~f~i~~~~~~~~~~~~~~~  346 (366)
                      +|+++|.++                               +|++.+.+.+++++++......+
T Consensus       344 ~G~l~~~~~-------------------------------~~~~~~~~~~~~~~~~~~~~~~~  375 (382)
T PRK10091        344 GGMMLTLGL-------------------------------AYNYVALPAALLSFAAMSSLLLY  375 (382)
T ss_pred             hHHHHHccc-------------------------------CcchHHHHHHHHHHHHHHHHHHH
Confidence            999999764                               39999998887776655544443

>PRK09528 lacY galactoside permease; Reviewed

Probab=99.27  E-value=9.9e-11  Score=115.84  Aligned_cols=173  Identities=14%  Similarity=0.093  Sum_probs=112.2

Q ss_pred             HhhhhHHHHHHHHHHHhhhhHHHHHhcHHHHHHH-hCCChhHH--HHHHHHHHHhhhhhhhhhhhhhhhhhccCchhHHH
Q 017795          132 ALMKADFLLLFFSLVLASGSGLTVIDNLGQICQS-LGYADTSI--YVSMISIWNFLGRVGGGYFSEAIVRKFAYPRPVAM  208 (366)
Q Consensus       132 ~l~~~~~~ll~~~~~~~~~~~~~~~~~l~~i~~~-~g~~~~~~--~~sl~~i~~~~g~~~~G~lsD~~grr~~~~R~~~~  208 (366)
                      .++++++|.+.+.+++...+...+...+|.+.++ +|++..++  ..+...+...++++++|+++||+|||+..      
T Consensus         6 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~g~s~~~~g~~~s~~~l~~~i~~~~~G~l~Dr~g~r~~~------   79 (420)
T PRK09528          6 YLKNPNYWIFSLFFFFFFFIWSSWFSFFPIWLHDINGLSGTDTGIIFSANSLFALLFQPLYGLISDKLGLKKHL------   79 (420)
T ss_pred             hhcCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCchHHH------
Confidence            4567789998888888777666667777777766 89998776  89999999999999999999999987654      


Q ss_pred             HHHHHHHHHHHH---HHHhcch-h-HH----HHHHHHHHHHhhhhhhhHHHHHHHhhCCCchhhHHHHHHhHhhhhHHHh
Q 017795          209 AVAQVVMAFALL---YYAIGWP-G-EI----YVTTVLVGLSYGAHWAIVPAAASELFGLKSFGALYNFLTLASPAGSLIF  279 (366)
Q Consensus       209 ~~~~~~~~~~~~---l~~~~~~-~-~l----~~~~~l~G~~~g~~~~~~~~~~se~f~~~~~g~~~g~~~~~~~~G~~i~  279 (366)
                      .++..+.+++..   ....... . ..    +++.++.|.+.....+....+..+ + .++++..+|.......+|..+ 
T Consensus        80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~-~~~~g~~~g~~~~~~~~g~~i-  156 (420)
T PRK09528         80 LWIISGLLVLFGPFFIYVFAPLLQYNILLGAIVGGIYLGFGFLAGAGAIEAYIER-V-SRRSGFEYGRARMWGSLGWAL-  156 (420)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhccchhhhhhHHHH-H-HhhccccchhhHHhhhHHHHH-
Confidence            222222222211   1111100 0 11    122222333332322333333322 2 345677888888888999996 


Q ss_pred             hhhHHHHHhhhhhhhhhhhhhhccCCCCCcccCCCCCCcccCCcchHHHHHHHHHHHHHHHHHHHHH
Q 017795          280 SGVIASGIYDYYAEKQAGLLWKYNGNMLPVSFRDQETPTCLGSICYSITCGIMAGLCIIAMVMSLIV  346 (366)
Q Consensus       280 gp~i~G~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~g~~~~~~~f~i~~~~~~~~~~~~~~~  346 (366)
                      +|.++|++.+. +                                |+..|++.+++++++.++.+..
T Consensus       157 ~~~~~g~l~~~-~--------------------------------~~~~f~~~~~~~~~~~~~~~~~  190 (420)
T PRK09528        157 CAFIAGILFNI-N--------------------------------PQINFWLGSGSALILLVLLFFA  190 (420)
T ss_pred             HHHHHHHHHhc-C--------------------------------chHhHHHHHHHHHHHHHHHhcc
Confidence            99999999863 4                                8889988887777665555443

>KOG4686 consensus Predicted sugar transporter [Carbohydrate transport and metabolism]

Probab=99.26  E-value=1.5e-10  Score=106.44  Aligned_cols=151  Identities=18%  Similarity=0.097  Sum_probs=120.2

Q ss_pred             hhHHHHHHHHHHHhhhhHHHHHhcHHHHHH-HhCCChhHH--HHHHHHHHHhhhhhhhhhhhhhhhhhccCchhHHHHHH
Q 017795          135 KADFLLLFFSLVLASGSGLTVIDNLGQICQ-SLGYADTSI--YVSMISIWNFLGRVGGGYFSEAIVRKFAYPRPVAMAVA  211 (366)
Q Consensus       135 ~~~~~ll~~~~~~~~~~~~~~~~~l~~i~~-~~g~~~~~~--~~sl~~i~~~~g~~~~G~lsD~~grr~~~~R~~~~~~~  211 (366)
                      .+.||++++..++.+....-++..-|.+.+ .+|+++.++  ..+.....+.+-.++.|.++|++|++..     +.+.+
T Consensus       263 ~ppfw~~~iicv~yyva~fPFi~lg~~fF~~rfGlS~~~a~~i~s~vy~Isav~spvfg~i~Dk~G~n~~-----wv~~a  337 (459)
T KOG4686|consen  263 YPPFWVLVIICVLYYVAWFPFITLGPMFFQKRFGLSAVSAGNILSTVYGISAVLSPVFGAISDKYGFNLW-----WVASA  337 (459)
T ss_pred             CccHHHHHHHHHHHHHHHHHHhhhhHHHHHHhhCCChhhccchhhhhhhhhhhhhhhHHHhHhhhcceeh-----hHHHH
Confidence            567999998888877776666665555554 589998776  7888888888899999999999998653     44666


Q ss_pred             HHHHHHHHHHHHhcchhHHHHHHHHHHHHhhhhhhhHHHHHHHhhCCCchhhHHHHHHhHhhhhHHHhhhhHHHHHhhhh
Q 017795          212 QVVMAFALLYYAIGWPGEIYVTTVLVGLSYGAHWAIVPAAASELFGLKSFGALYNFLTLASPAGSLIFSGVIASGIYDYY  291 (366)
Q Consensus       212 ~~~~~~~~~l~~~~~~~~l~~~~~l~G~~~g~~~~~~~~~~se~f~~~~~g~~~g~~~~~~~~G~~i~gp~i~G~l~d~~  291 (366)
                      .+....++..+.+.. ..-|++..+.|+++...-...|..++.+.|.++.|++||+.....++|-.+ .|+++|.+.|..
T Consensus       338 ~~~tl~~H~~l~Ft~-lsPy~~m~~lGLsysllAcslWP~va~~vpE~qLGTaygf~qsIqNLgla~-i~Iiag~i~d~~  415 (459)
T KOG4686|consen  338 CILTLLGHSGLFFTF-LSPYTSMTFLGLSYSLLACSLWPCVASLVPEEQLGTAYGFIQSIQNLGLAF-IPIIAGFIADGD  415 (459)
T ss_pred             HHHHHHHhhhHHhhh-ccHHHHHHHHhhhHHHHHHHHhhhhhhhCCHHHhcchHHHHHHHHhhhhhH-HhhhhheeecCC
Confidence            677777777765432 223567778898888776778888899999999999999999999999996 799999999987


Q ss_pred             h
Q 017795          292 A  292 (366)
Q Consensus       292 ~  292 (366)
                      +
T Consensus       416 g  416 (459)
T KOG4686|consen  416 G  416 (459)
T ss_pred             C
Confidence            6

>TIGR00895 2A0115 benzoate transport

Probab=99.25  E-value=8.6e-11  Score=113.85  Aligned_cols=144  Identities=11%  Similarity=0.103  Sum_probs=107.7

Q ss_pred             HHHHHHHHHHHhhhhHHHHHhcHHHHHHHhCCChhHH--HHHHHHHHHhhhhhhhhhhhhhhhhhccCchhHHHHHHHHH
Q 017795          137 DFLLLFFSLVLASGSGLTVIDNLGQICQSLGYADTSI--YVSMISIWNFLGRVGGGYFSEAIVRKFAYPRPVAMAVAQVV  214 (366)
Q Consensus       137 ~~~ll~~~~~~~~~~~~~~~~~l~~i~~~~g~~~~~~--~~sl~~i~~~~g~~~~G~lsD~~grr~~~~R~~~~~~~~~~  214 (366)
                      .++.+++.+++..........++|.+.+++|++....  ..++..++..++++++|+++||+++|. .     .....+.
T Consensus       251 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-~-----~~~~~~~  324 (398)
T TIGR00895       251 ITVLLWLLYFMLLVGVYFLTNWLPKLMVELGFSLSLAATGGALFNFGGVIGSIIFGWLADRLGPRV-T-----ALLLLLG  324 (398)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchHH-H-----HHHHHHH
Confidence            3444555555555555566778888888899887655  777888899999999999999998862 2     1222222


Q ss_pred             HHHHHHHHH-hcchhHHHHHHHHHHHHhhhhhhhHHHHHHHhhCCCchhhHHHHHHhHhhhhHHHhhhhHHHHH
Q 017795          215 MAFALLYYA-IGWPGEIYVTTVLVGLSYGAHWAIVPAAASELFGLKSFGALYNFLTLASPAGSLIFSGVIASGI  287 (366)
Q Consensus       215 ~~~~~~l~~-~~~~~~l~~~~~l~G~~~g~~~~~~~~~~se~f~~~~~g~~~g~~~~~~~~G~~i~gp~i~G~l  287 (366)
                      ...+.++.. ..+....++..++.|++.+...+...+.++|.+|++++|+++|+.+....+|..+ ||.++|++
T Consensus       325 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~-g~~~~G~l  397 (398)
T TIGR00895       325 AVFAVLVGSTLFSPTLLLLLGAIAGFFVNGGQSGLYALMALFYPTAIRATGVGWAIGIGRLGAII-GPILAGYL  397 (398)
T ss_pred             HHHHHHHHHHhhCHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHHHHH-HHHhHHhc
Confidence            222222222 3445566777888999999989999999999999999999999999999999996 99999976

>PRK03893 putative sialic acid transporter; Provisional

Probab=99.24  E-value=1.7e-10  Score=116.43  Aligned_cols=132  Identities=13%  Similarity=0.172  Sum_probs=95.2

Q ss_pred             HHHhcHHHHHH-HhCCChhHH--HHHHHHHHHhhhhhhhhhhhhhhhhhccCchhHHHHHHHHHHHHHHHHHH-hcchh-
Q 017795          154 TVIDNLGQICQ-SLGYADTSI--YVSMISIWNFLGRVGGGYFSEAIVRKFAYPRPVAMAVAQVVMAFALLYYA-IGWPG-  228 (366)
Q Consensus       154 ~~~~~l~~i~~-~~g~~~~~~--~~sl~~i~~~~g~~~~G~lsD~~grr~~~~R~~~~~~~~~~~~~~~~l~~-~~~~~-  228 (366)
                      ....++|.+.+ ++|++..++  ..+...++..+|++++|+++||++||+..      .++.++.+++.+++. ..... 
T Consensus       293 ~~~~~lp~~l~~~~g~~~~~~g~~~~~~~~~~~~g~~~~g~l~dr~g~~~~~------~~~~~~~~~~~~~~~~~~~~~~  366 (496)
T PRK03893        293 PIQALLPTYLKTDLGYDPHTVANVLFFSGFGAAVGCCVGGFLGDWLGTRKAY------VCSLLISQLLIIPVFAIGGANV  366 (496)
T ss_pred             hHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHH------HHHHHHHHHHHHHHhhccccHH
Confidence            45567899885 789988765  78888899999999999999999987543      333333333333222 22222 


Q ss_pred             -HHHHHHHHHHHHhhhhhhhHHHHHHHhhCCCchhhHHHHHHhHhhhhHHHhhhhHHHHHhhhhh
Q 017795          229 -EIYVTTVLVGLSYGAHWAIVPAAASELFGLKSFGALYNFLTLASPAGSLIFSGVIASGIYDYYA  292 (366)
Q Consensus       229 -~l~~~~~l~G~~~g~~~~~~~~~~se~f~~~~~g~~~g~~~~~~~~G~~i~gp~i~G~l~d~~~  292 (366)
                       .+.+..++.++...+..++.+++++|.++.+.+|+.+++.+....+|+.+ ||.++|.+.|..+
T Consensus       367 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~g~~l-gp~l~g~l~~~~g  430 (496)
T PRK03893        367 WVLGLLLFFQQMLGQGISGLLPKLIGGYFDTEQRAAGLGFTYNVGALGGAL-APILGALIAQRLD  430 (496)
T ss_pred             HHHHHHHHHHHHHhcccchhhHHHHHhhCCHHHhhcccchhhhhhhHHHHH-HHHHHHHHhccCC
Confidence             22233333333333445677888999999999999999999999999996 9999999999887

>PRK11010 ampG muropeptide transporter; Validated

Probab=99.24  E-value=9.4e-10  Score=111.56  Aligned_cols=182  Identities=13%  Similarity=0.117  Sum_probs=118.5

Q ss_pred             HHHHhhhhHHHHHHHHHHHhhhhHHHHHhcHHHHH-HHhCCChhHH--HH-HHHHHHHhhhhhhhhhhhhhhhhhccCch
Q 017795          129 LPQALMKADFLLLFFSLVLASGSGLTVIDNLGQIC-QSLGYADTSI--YV-SMISIWNFLGRVGGGYFSEAIVRKFAYPR  204 (366)
Q Consensus       129 ~~~~l~~~~~~ll~~~~~~~~~~~~~~~~~l~~i~-~~~g~~~~~~--~~-sl~~i~~~~g~~~~G~lsD~~grr~~~~R  204 (366)
                      +++.++++.+|.+.+..++..........+.+++. +++|++..+.  .. .+..++.++|.+++|+++||+++|+..  
T Consensus       215 l~~~~~~~~~~~~ll~~~l~~~~~~~~~~~~~~~l~~~~G~s~~~~g~~~~~~g~i~~iiG~ll~G~L~dr~g~~~~l--  292 (491)
T PRK11010        215 LRDFFGRNNAWLILLLIVLYKLGDAFAMSLTTTFLIRGVGFDAGEVGLVNKTLGLLATIVGALYGGILMQRLSLFRAL--  292 (491)
T ss_pred             HHHHHcCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHH--
Confidence            45566666667555444443333333444555554 5689988776  33 344578889999999999999986432  


Q ss_pred             hHHHHHHHHHHHHHHHHHHhc--chhHHHHHHHHHHHHhhhhhhhHHHHHHHhhCCCchhhHHHHHHhHhhhhHHHhhhh
Q 017795          205 PVAMAVAQVVMAFALLYYAIG--WPGEIYVTTVLVGLSYGAHWAIVPAAASELFGLKSFGALYNFLTLASPAGSLIFSGV  282 (366)
Q Consensus       205 ~~~~~~~~~~~~~~~~l~~~~--~~~~l~~~~~l~G~~~g~~~~~~~~~~se~f~~~~~g~~~g~~~~~~~~G~~i~gp~  282 (366)
                       ....+...+..+.+.++...  +...+....++..++.|...+...+...++.+.+..++.+++.+....+|..+ ++.
T Consensus       293 -~i~~~l~~l~~l~~~~l~~~~~~~~~l~~~~~l~~~~~g~~~~~~~a~~~~l~~~~~~~t~~gl~~s~~~lg~~~-~~~  370 (491)
T PRK11010        293 -MIFGILQGVSNAGYWLLSITDKNLYSMGAAVFFENLCGGMGTAAFVALLMTLCNKSFSATQFALLSALSAVGRVY-VGP  370 (491)
T ss_pred             -HHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHHHHHH-HHH
Confidence             11111112222222222222  22223334444444555455666778889998889999999999999999996 778


Q ss_pred             HHHHHhhhhhhhhhhhhhhccCCCCCcccCCCCCCcccCCcchHHHHHHHHHHHHHHHHHHHHH
Q 017795          283 IASGIYDYYAEKQAGLLWKYNGNMLPVSFRDQETPTCLGSICYSITCGIMAGLCIIAMVMSLIV  346 (366)
Q Consensus       283 i~G~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~g~~~~~~~f~i~~~~~~~~~~~~~~~  346 (366)
                      ++|+++|..|                                |+..|.+.+++++++.++...+
T Consensus       371 ~~G~l~~~~G--------------------------------~~~~f~~~~~~~l~~l~~~~~~  402 (491)
T PRK11010        371 VAGWFVEAHG--------------------------------WPTFYLFSVAAAVPGLLLLLVC  402 (491)
T ss_pred             HHHHHHHHhC--------------------------------hHHHHHHHHHHHHHHHHHHHHH
Confidence            9999999877                                9999999888888877666554

>TIGR00896 CynX cyanate transporter

Probab=99.24  E-value=1.7e-10  Score=111.38  Aligned_cols=131  Identities=13%  Similarity=0.146  Sum_probs=105.0

Q ss_pred             HHHhcHHHHHHHhCCChhHH--HHHHHHHHHhhhhhhhhhhhhhhhhhccCchhHHHHHHHHHHHHHHHHHHhcchhHHH
Q 017795          154 TVIDNLGQICQSLGYADTSI--YVSMISIWNFLGRVGGGYFSEAIVRKFAYPRPVAMAVAQVVMAFALLYYAIGWPGEIY  231 (366)
Q Consensus       154 ~~~~~l~~i~~~~g~~~~~~--~~sl~~i~~~~g~~~~G~lsD~~grr~~~~R~~~~~~~~~~~~~~~~l~~~~~~~~l~  231 (366)
                      .+...+|.+.+++|++..+.  ..+++.++..++.+..|+++||+|||+..      ..+.++.+++.+.....+...++
T Consensus        18 ~~~~~lp~l~~~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~g~r~~~------~~~~~~~~~~~~~~~~~~~~~l~   91 (355)
T TIGR00896        18 SVGPLLPQIRSALGMSFSVAGLLTALPVLCFAVLAPLAPWLARRFGEERSV------AAGLLLIAAGILIRSAPGTALLF   91 (355)
T ss_pred             cCcccHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHhHHHHHHHhCchHHH------HHHHHHHHHHHHHHHhccHHHHH
Confidence            34567899999999998776  78889999999999999999999998655      44554555554444344556677


Q ss_pred             HHHHHHHHHhhhhhhhHHHHHHHhhCCCchhhHHHHHHhHhhhhHHHhhhhHHHHHhhhhh
Q 017795          232 VTTVLVGLSYGAHWAIVPAAASELFGLKSFGALYNFLTLASPAGSLIFSGVIASGIYDYYA  292 (366)
Q Consensus       232 ~~~~l~G~~~g~~~~~~~~~~se~f~~~~~g~~~g~~~~~~~~G~~i~gp~i~G~l~d~~~  292 (366)
                      +.+++.|++.+...+..+..+.|.++ ++++.+.++.+....+|..+ ++.+.+.+.+..+
T Consensus        92 ~~~~~~g~g~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~g~~i-~~~~~~~l~~~~~  150 (355)
T TIGR00896        92 AGTALIGVGIAIINVLLPSLIKRDFP-QRVGLMTGLYSMALMGGAAL-AAAATVPLAQHSG  150 (355)
T ss_pred             HHHHHHHHHHHHHhccchHHHHHhCc-chhhHHHHHHHHHHHHHHHH-HHHHHHHHHHhhh
Confidence            88889999988877778888888885 68999999999999999996 8999998877653

This family of proteins is involved in active transport of cyanate. The cyanate transporter in E.Coli is used to transport cyanate into the cell so it can be metabolized into ammonia and bicarbonate. This process is used to overcome the toxicity of environmental cyanate.

>TIGR00891 2A0112 putative sialic acid transporter

Probab=99.24  E-value=4.3e-10  Score=109.45  Aligned_cols=132  Identities=17%  Similarity=0.241  Sum_probs=98.1

Q ss_pred             HHHhcHHHHHH-HhCCChhHH--HHHHHHHHHhhhhhhhhhhhhhhhhhccCchhHHHHHHHHHHHHH-HHHHHhc-chh
Q 017795          154 TVIDNLGQICQ-SLGYADTSI--YVSMISIWNFLGRVGGGYFSEAIVRKFAYPRPVAMAVAQVVMAFA-LLYYAIG-WPG  228 (366)
Q Consensus       154 ~~~~~l~~i~~-~~g~~~~~~--~~sl~~i~~~~g~~~~G~lsD~~grr~~~~R~~~~~~~~~~~~~~-~~l~~~~-~~~  228 (366)
                      ....++|.+.. ++|++..+.  ..+...++..+++++.|+++||++||+..      .++.++.++. ..++... +..
T Consensus       256 ~~~~~~~~~~~~~~g~s~~~~~~~~~~~~~~~~~g~~~~g~l~dr~g~~~~~------~~~~~~~~~~~~~~~~~~~~~~  329 (405)
T TIGR00891       256 PIQDLLPTYLKADLGLSPHTVANIVVFSNIGAIVGGCVFGFLGDWLGRRKAY------VCSLLAGQLLIIPVFAIGANVA  329 (405)
T ss_pred             hhhhhhHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCchhhh------HHHHHHHHHHHHHHHHhCCchH
Confidence            44556777664 578887665  67788889999999999999999987654      3333333222 2222222 223


Q ss_pred             HHHHHHHHHHHHhhhhhhhHHHHHHHhhCCCchhhHHHHHHhHhhhhHHHhhhhHHHHHhhhhh
Q 017795          229 EIYVTTVLVGLSYGAHWAIVPAAASELFGLKSFGALYNFLTLASPAGSLIFSGVIASGIYDYYA  292 (366)
Q Consensus       229 ~l~~~~~l~G~~~g~~~~~~~~~~se~f~~~~~g~~~g~~~~~~~~G~~i~gp~i~G~l~d~~~  292 (366)
                      .+.+..++.+++.++.++..++.++|.+|++++|+++|+.+....+|+.+ +|.++|++.|..|
T Consensus       330 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~~~-g~~~~g~l~~~~g  392 (405)
T TIGR00891       330 VLGLGLFFQQMLVQGIWGILPKHLGEYFPTDQRAAGLGFTYQLGNLGGAL-APIIGALLAQRLD  392 (405)
T ss_pred             HHHHHHHHHHHHHccchhhHHHHHhhhCCcchhHHHhhHHHHHHHHHHHH-HHHHHHHHHHhcc
Confidence            34445466677777777888899999999999999999999999999996 9999999999877

>PRK10504 putative transporter; Provisional

Probab=99.24  E-value=5.9e-10  Score=111.85  Aligned_cols=155  Identities=8%  Similarity=-0.029  Sum_probs=114.3

Q ss_pred             HHhhhhHHHHHHHHHHHhhhhHHHHHhcHHHHHHH-hCCChhHH--HHHHHHHHHhhhhhhhhhhhhhhhhhccCchhHH
Q 017795          131 QALMKADFLLLFFSLVLASGSGLTVIDNLGQICQS-LGYADTSI--YVSMISIWNFLGRVGGGYFSEAIVRKFAYPRPVA  207 (366)
Q Consensus       131 ~~l~~~~~~ll~~~~~~~~~~~~~~~~~l~~i~~~-~g~~~~~~--~~sl~~i~~~~g~~~~G~lsD~~grr~~~~R~~~  207 (366)
                      +.++++.++...+..++............|++.+. +|++....  ......++..++.+++|+++||+++|+..     
T Consensus       256 ~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~l~~r~g~~~~~-----  330 (471)
T PRK10504        256 KLFRTRTFSLGLAGSFAGRIGSGMLPFMTPVFLQIGLGFSPFHAGLMMIPMVLGSMGMKRIVVQVVNRFGYRRVL-----  330 (471)
T ss_pred             HHhcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCchHHH-----
Confidence            57788888887777776666555566678888875 78887655  45555666777889999999999987654     


Q ss_pred             HHHHHHHHHHHHHHHHh-c--c-hhHHHHHHHHHHHHhhhhhhhHHHHHHHhhCCCchhhHHHHHHhHhhhhHHHhhhhH
Q 017795          208 MAVAQVVMAFALLYYAI-G--W-PGEIYVTTVLVGLSYGAHWAIVPAAASELFGLKSFGALYNFLTLASPAGSLIFSGVI  283 (366)
Q Consensus       208 ~~~~~~~~~~~~~l~~~-~--~-~~~l~~~~~l~G~~~g~~~~~~~~~~se~f~~~~~g~~~g~~~~~~~~G~~i~gp~i  283 (366)
                       ..+.++.+++.+++.. .  . ...+.+..++.|++.+..++.....+.+.++.+.+|.++++.+....+|..+ |+.+
T Consensus       331 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~g~~i-g~~i  408 (471)
T PRK10504        331 -VATTLGLALVSLLFMLVALLGWYYLLPFVLFLQGMVNSTRFSSMNTLTLKDLPDNLASSGNSLLSMIMQLSMSI-GVTI  408 (471)
T ss_pred             -HHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHhccchHHHHHHHHHHHHHH-HHHH
Confidence             4444444444443332 1  1 1223345566778877777888888889999999999999999999999996 9999


Q ss_pred             HHHHhhhhh
Q 017795          284 ASGIYDYYA  292 (366)
Q Consensus       284 ~G~l~d~~~  292 (366)
                      +|.+.+..+
T Consensus       409 ~g~ll~~~g  417 (471)
T PRK10504        409 AGLLLGLFG  417 (471)
T ss_pred             HHHHHHHhh
Confidence            999998776

>PRK11010 ampG muropeptide transporter; Validated

Probab=99.24  E-value=1e-09  Score=111.27  Aligned_cols=170  Identities=13%  Similarity=0.065  Sum_probs=124.3

Q ss_pred             HHHHHHHHHHHhhhhHHHHHhcHHHHHHHhCCChhHH-HHHHHHHHHhhhhhhhhhhhhhh-----hhhccCchhHHHHH
Q 017795          137 DFLLLFFSLVLASGSGLTVIDNLGQICQSLGYADTSI-YVSMISIWNFLGRVGGGYFSEAI-----VRKFAYPRPVAMAV  210 (366)
Q Consensus       137 ~~~ll~~~~~~~~~~~~~~~~~l~~i~~~~g~~~~~~-~~sl~~i~~~~g~~~~G~lsD~~-----grr~~~~R~~~~~~  210 (366)
                      +.+.++..++............+|.+.++.|.+..++ ..+..... .++++++|+++||+     |||+     .++..
T Consensus        13 ~~~~~~~l~~~~gl~~~~~~~~l~~~l~~~g~~~~~ig~~~~~~~~-~~~~~l~gpl~Dr~~~~~~Grrr-----~~ll~   86 (491)
T PRK11010         13 NSAILLILGFASGLPLALTSGTLQAWMTVENIDLKTIGFFSLVGQA-YVFKFLWSPLMDRYTPPFLGRRR-----GWLLA   86 (491)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH-HHHHHHHHHHHHcccccCCCCch-----HHHHH
Confidence            3444444444444445556677899999999988776 44444433 36899999999999     6543     33456


Q ss_pred             HHHHHHHHHHHHHhc----chhHHHHHHHHHHHHhhhhhhhHHHHHHHhhCCCchhhHHHHHHhHhhhhHHHhhhhHHHH
Q 017795          211 AQVVMAFALLYYAIG----WPGEIYVTTVLVGLSYGAHWAIVPAAASELFGLKSFGALYNFLTLASPAGSLIFSGVIASG  286 (366)
Q Consensus       211 ~~~~~~~~~~l~~~~----~~~~l~~~~~l~G~~~g~~~~~~~~~~se~f~~~~~g~~~g~~~~~~~~G~~i~gp~i~G~  286 (366)
                      +++..+++...++..    +...+++..++.+++.+.......+++.|.++.++|+.+.++...+..+|..+ ++.+.++
T Consensus        87 ~~i~~~~~~~~~a~~~~~~~l~~l~~~~~l~~~~~a~~~i~~~a~~~~~~~~~~rg~~~~i~~~g~~lG~ll-g~~l~~~  165 (491)
T PRK11010         87 TQLLLLVAIAAMGFLEPGTQLRWLAALAVVIAFCSASQDIVFDAWKTDVLPAEERGAGAAISVLGYRLAMLV-SGGLALW  165 (491)
T ss_pred             HHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcChhhhHHHHHHHHHHHHHHHHH-HHHHHHH
Confidence            666666655554422    23356667778888888888888999999999999999999999999999996 8999999


Q ss_pred             Hhhh-hhhhhhhhhhhccCCCCCcccCCCCCCcccCCcchHHHHHHHHHHHHHHHHHHHH
Q 017795          287 IYDY-YAEKQAGLLWKYNGNMLPVSFRDQETPTCLGSICYSITCGIMAGLCIIAMVMSLI  345 (366)
Q Consensus       287 l~d~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~g~~~~~~~f~i~~~~~~~~~~~~~~  345 (366)
                      +.+. .+                                ||..|++.+++.++..+..+.
T Consensus       166 l~~~~~G--------------------------------Wr~~f~i~a~l~ll~~l~~~~  193 (491)
T PRK11010        166 LADRYLG--------------------------------WQGMYWLMAALLIPCIIATLL  193 (491)
T ss_pred             HHhcccC--------------------------------HHHHHHHHHHHHHHHHHHHHh
Confidence            8873 34                                999999999877776555443

>PTZ00207 hypothetical protein; Provisional

Probab=99.22  E-value=7.4e-10  Score=113.70  Aligned_cols=154  Identities=10%  Similarity=0.058  Sum_probs=114.6

Q ss_pred             HHHHHhcHHHHHHHhCCChhHH--HHHHHHHHHhhhhhhhhhhhhhhhhhccCchhHHHHHHHHHHHHHHHHHHhc----
Q 017795          152 GLTVIDNLGQICQSLGYADTSI--YVSMISIWNFLGRVGGGYFSEAIVRKFAYPRPVAMAVAQVVMAFALLYYAIG----  225 (366)
Q Consensus       152 ~~~~~~~l~~i~~~~g~~~~~~--~~sl~~i~~~~g~~~~G~lsD~~grr~~~~R~~~~~~~~~~~~~~~~l~~~~----  225 (366)
                      .+.+....+++.+++|++..+.  ..++ .....++.+..|+++||+|+|+.+      .++.++.+++.++.+..    
T Consensus        43 ~y~fsv~s~~L~~~lgls~~~l~~i~sv-g~~~g~~~lp~G~L~Dr~G~R~vl------lig~ll~~iG~ll~ala~~~~  115 (591)
T PTZ00207         43 MYAFNLISGAMQARYNLTQRDLSTITTV-GIAVGYFLLPYSFIYDYLGPRPIF------VLSMTVFCLGTLLFALTFQEV  115 (591)
T ss_pred             HHHHHHHHHHHHHHhCcCHHHHHHHHHH-HHHHHHHHHHHHHHHHHhCcHHHH------HHHHHHHHHHHHHHHHHhccc
Confidence            3455556788889999998775  3333 223334566789999999988765      77777778887776642    


Q ss_pred             ---chhHHHHHHHHHHHHhhhhhhhHHHHHHHhhCCCchhhHHHHHHhHhhhhHHHhhhhHHHHHhhhhhhhhhhhhhhc
Q 017795          226 ---WPGEIYVTTVLVGLSYGAHWAIVPAAASELFGLKSFGALYNFLTLASPAGSLIFSGVIASGIYDYYAEKQAGLLWKY  302 (366)
Q Consensus       226 ---~~~~l~~~~~l~G~~~g~~~~~~~~~~se~f~~~~~g~~~g~~~~~~~~G~~i~gp~i~G~l~d~~~~~~~~~~~~~  302 (366)
                         +...++++.++.|+|.+..++....++.+.|+ ++||.+.|+......+|+.+++++..+++.  .+          
T Consensus       116 i~~s~~~l~l~r~l~G~G~~~~~~~~~~~i~~~Fp-~~RG~a~Gi~~~~~gLGsaI~~~l~~~l~~--~~----------  182 (591)
T PTZ00207        116 IEGSVVRLSVYNGLMTLGCMLFDLGAVVTVLSVFP-SNRGAVVAIMKTFTGLGSAILGSIQLAFFS--DN----------  182 (591)
T ss_pred             ccCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCh-hhhHHHHHHHHHHHHHHHHHHHHHHHHHHH--Hh----------
Confidence               45567788889999988777777788899995 788999999999999999876666666543  23          


Q ss_pred             cCCCCCcccCCCCCCcccCCcchHHHHHHHHHHHHHHHHHHHHHH
Q 017795          303 NGNMLPVSFRDQETPTCLGSICYSITCGIMAGLCIIAMVMSLIVV  347 (366)
Q Consensus       303 ~~~~~~~~~~~~~~~~c~g~~~~~~~f~i~~~~~~~~~~~~~~~~  347 (366)
                                            |+..|++++++.++.+++.+.+.
T Consensus       183 ----------------------~~~~fl~l~vl~~vv~ll~~~~v  205 (591)
T PTZ00207        183 ----------------------TSAYFFFLMSFALVVGILAIVFM  205 (591)
T ss_pred             ----------------------HHHHHHHHHHHHHHHHHHHHhhe
Confidence                                  77788888887777666666554

>TIGR00887 2A0109 phosphate:H+ symporter

Probab=99.22  E-value=8.7e-10  Score=111.92  Aligned_cols=109  Identities=17%  Similarity=0.211  Sum_probs=89.6

Q ss_pred             HHHHHHHHHhhhhhhhhhhhhhhhhhccCchhHHHHHHHHHHHHHHHHHHh-cc------hhHHHHHHHHHHHHhhhhhh
Q 017795          174 YVSMISIWNFLGRVGGGYFSEAIVRKFAYPRPVAMAVAQVVMAFALLYYAI-GW------PGEIYVTTVLVGLSYGAHWA  246 (366)
Q Consensus       174 ~~sl~~i~~~~g~~~~G~lsD~~grr~~~~R~~~~~~~~~~~~~~~~l~~~-~~------~~~l~~~~~l~G~~~g~~~~  246 (366)
                      ..+...++..++.+++|+++||+|||+.+      ..+.+++.++.++.+. .+      ...+++++++.|++.|+.++
T Consensus        61 ~~~~~~ig~~ig~~~~g~l~d~~Grr~~~------~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~r~l~G~~~g~~~~  134 (502)
T TIGR00887        61 VNGSASIGTLAGQLFFGWLADKLGRKRVY------GMELIIMIIATVASGLSPGSSPKSVMATLCFWRFWLGVGIGGDYP  134 (502)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhhccHHHH------HHHHHHHHHHHHHHHHccCcccchHHHHHHHHHHHHHHHHhhhhH
Confidence            78888889999999999999999998765      4555555555444332 22      34678899999999999999


Q ss_pred             hHHHHHHHhhCCCchhhHHHHHHhHhhhhHHHhhhhHHHHHhh
Q 017795          247 IVPAAASELFGLKSFGALYNFLTLASPAGSLIFSGVIASGIYD  289 (366)
Q Consensus       247 ~~~~~~se~f~~~~~g~~~g~~~~~~~~G~~i~gp~i~G~l~d  289 (366)
                      ..+.+++|.+|++.||.+.++......+|..+ ++.+...+..
T Consensus       135 ~~~~~~~e~~p~~~Rg~~~~~~~~~~~~g~~~-g~~~~~~~~~  176 (502)
T TIGR00887       135 LSAIITSEFATKKWRGAMMAAVFAMQGFGILA-GAIVALIVLA  176 (502)
T ss_pred             HHHHHHHHhcChhhHHHHHHHHHHHHHHHHHH-HHHHHHHHHH
Confidence            99999999999999999999999999999985 8888776554

This model represents the phosphate uptake symporter subfamily of the major facilitator superfamily (pfam00083).

>PRK15075 citrate-proton symporter; Provisional

Probab=99.21  E-value=5.8e-10  Score=111.01  Aligned_cols=144  Identities=14%  Similarity=0.073  Sum_probs=106.5

Q ss_pred             HHHHHHHHHHhhhhHHHHHhcHHHHHHHhCCChhHH---HHHHH-----HHHHhhhhhhhhhhhhhhhhhccCchhHHHH
Q 017795          138 FLLLFFSLVLASGSGLTVIDNLGQICQSLGYADTSI---YVSMI-----SIWNFLGRVGGGYFSEAIVRKFAYPRPVAMA  209 (366)
Q Consensus       138 ~~ll~~~~~~~~~~~~~~~~~l~~i~~~~g~~~~~~---~~sl~-----~i~~~~g~~~~G~lsD~~grr~~~~R~~~~~  209 (366)
                      ...++++.++.......+....|++.++++.++.+.   ..+..     .+...+|.++.|+++||+|||+.+      .
T Consensus        17 ~~~~~~~~~~~~~d~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ig~~~~G~l~Dr~Grr~~l------~   90 (434)
T PRK15075         17 ILRVTSGNFLEMFDFFLFGFYATAIAKTFFPAGNEFASLMLTFAVFGAGFLMRPLGAIVLGAYIDRVGRRKGL------I   90 (434)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHHHHhhhHHHHHHHHhhhhchHHHH------H
Confidence            344556666777777778888999999998766442   22222     222246788899999999998765      5


Q ss_pred             HHHHHHHHHHHHHHhc-chh--------HHHHHHHHHHHHhhhhhhhHHHHHHHhhCCCchhhHHHHHHhHhhhhHHHhh
Q 017795          210 VAQVVMAFALLYYAIG-WPG--------EIYVTTVLVGLSYGAHWAIVPAAASELFGLKSFGALYNFLTLASPAGSLIFS  280 (366)
Q Consensus       210 ~~~~~~~~~~~l~~~~-~~~--------~l~~~~~l~G~~~g~~~~~~~~~~se~f~~~~~g~~~g~~~~~~~~G~~i~g  280 (366)
                      .+.++.+++.++.+.. +..        .+++++++.|++.|..++....+++|.+|+++|+...++......+|..+ +
T Consensus        91 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~R~l~G~~~g~~~~~~~~~~~e~~p~~~rg~~~~~~~~~~~~g~~~-g  169 (434)
T PRK15075         91 VTLSIMASGTLLIAFVPGYATIGLAAPLLVLLGRLLQGFSAGVELGGVSVYLAEIATPGRKGFYTSWQSASQQVAVVF-A  169 (434)
T ss_pred             HHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHHhhccccccHHHHHHHHHhhCCcccchHHHHHHHHHHHHHHHH-H
Confidence            6666666666665533 322        35778999999999888888899999999999999999998888888775 7


Q ss_pred             hhHHHHHh
Q 017795          281 GVIASGIY  288 (366)
Q Consensus       281 p~i~G~l~  288 (366)
                      +.+++.+.
T Consensus       170 ~~~g~~l~  177 (434)
T PRK15075        170 ALLGYLLN  177 (434)
T ss_pred             HHHHHHHH
Confidence            77766654

>COG2814 AraJ Arabinose efflux permease [Carbohydrate transport and metabolism]

Probab=99.21  E-value=1.1e-09  Score=106.56  Aligned_cols=180  Identities=17%  Similarity=0.238  Sum_probs=132.7

Q ss_pred             CHHHHhhhhHHHHHHHHHHHhhhhHHHHHhcHHHHHHH-hCCChhHH--HHHHHHHHHhhhhhhhhhhhhhhhhhccCch
Q 017795          128 TLPQALMKADFLLLFFSLVLASGSGLTVIDNLGQICQS-LGYADTSI--YVSMISIWNFLGRVGGGYFSEAIVRKFAYPR  204 (366)
Q Consensus       128 ~~~~~l~~~~~~ll~~~~~~~~~~~~~~~~~l~~i~~~-~g~~~~~~--~~sl~~i~~~~g~~~~G~lsD~~grr~~~~R  204 (366)
                      +..+.++++..|..++..++.....++...++.++.++ .|++.+..  ....++++.++|..++|+++|| +.|+..  
T Consensus       203 ~~~~~l~~p~v~~~l~~t~l~~~g~F~~ftYi~P~L~~v~g~s~~~vs~~Ll~~Gv~~~~Gn~~gGrl~dr-~~~~~l--  279 (394)
T COG2814         203 TLLRLLRRPGVLLGLLATFLFMTGHFALYTYIRPFLESVAGFSVSAVSLVLLAFGIAGFIGNLLGGRLADR-GPRRAL--  279 (394)
T ss_pred             HHHHHhcCchHHHHHHHHHHHHcchhhhHHhHHHHHHHccCCCHhHHHHHHHHHHHHHHHHHHHHhhhccc-cchhHH--
Confidence            46788999999999888888877777666666666655 68877665  7888899999999999999999 554333  


Q ss_pred             hHHHHHHHHHHHHHHHHHH--hcchhHHHHHHHHHHHHhhhhhhhHHHHHHHhhCCCchhhHHHHHHhHhhhhHHHhhhh
Q 017795          205 PVAMAVAQVVMAFALLYYA--IGWPGEIYVTTVLVGLSYGAHWAIVPAAASELFGLKSFGALYNFLTLASPAGSLIFSGV  282 (366)
Q Consensus       205 ~~~~~~~~~~~~~~~~l~~--~~~~~~l~~~~~l~G~~~g~~~~~~~~~~se~f~~~~~g~~~g~~~~~~~~G~~i~gp~  282 (366)
                          .....++++..+.+.  ..+.....+..++.|+..+..........++ ..++....+.++...+.++|-.+ |..
T Consensus       280 ----~~~~~l~a~~~l~l~~~~~~~~~~~~~~~~wg~a~~~~~~~~~~~~a~-~~p~~~~~a~sl~~aa~nlgia~-GA~  353 (394)
T COG2814         280 ----IAALLLLALALLALTFTGASPALALALLFLWGFAFSPALQGLQTRLAR-LAPDAADLAGSLNVAAFNLGIAL-GAA  353 (394)
T ss_pred             ----HHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHhhhhhhHHHHHhcc-cCCCchHHHHHHHHHHHHHHHHH-HHH
Confidence                344444444444433  2334444555555666665555555555566 55788999999999999999996 999


Q ss_pred             HHHHHhhhhhhhhhhhhhhccCCCCCcccCCCCCCcccCCcchHHHHHHHHHHHHHHHHHHHHHHh
Q 017795          283 IASGIYDYYAEKQAGLLWKYNGNMLPVSFRDQETPTCLGSICYSITCGIMAGLCIIAMVMSLIVVH  348 (366)
Q Consensus       283 i~G~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~g~~~~~~~f~i~~~~~~~~~~~~~~~~~  348 (366)
                      ++|.++|+.|                                |....++.+.+.+++.++.++..+
T Consensus       354 lGG~v~~~~g--------------------------------~~~~~~~~a~l~~~a~~~~~~~~~  387 (394)
T COG2814         354 LGGLVLDALG--------------------------------YAATGWVGAALLLLALLLALLSAR  387 (394)
T ss_pred             HHHHHHHhhc--------------------------------hHHHHHHHHHHHHHHHHHHHHHHh
Confidence            9999999977                                999999999888887777665443

>TIGR00898 2A0119 cation transport protein

Probab=99.21  E-value=8.6e-11  Score=118.94  Aligned_cols=145  Identities=17%  Similarity=0.132  Sum_probs=115.9

Q ss_pred             hcHHHHHHHhCCC---hhHH--HHHHHHHHHhhhhhhhhhhhhhhhhhccCchhHHHHHHHHHHHHHHHHHH-hcchhHH
Q 017795          157 DNLGQICQSLGYA---DTSI--YVSMISIWNFLGRVGGGYFSEAIVRKFAYPRPVAMAVAQVVMAFALLYYA-IGWPGEI  230 (366)
Q Consensus       157 ~~l~~i~~~~g~~---~~~~--~~sl~~i~~~~g~~~~G~lsD~~grr~~~~R~~~~~~~~~~~~~~~~l~~-~~~~~~l  230 (366)
                      ...+.+.++++.+   ....  ..+++.++..+|.+++|+++||+|||+.+      .++.++.+++.++.+ ..+...+
T Consensus       110 ~~~~~i~~e~~l~c~~~~~~~~~~s~~~~g~~~g~~~~g~l~Dr~Grr~~~------~~~~~~~~i~~~~~~~~~~~~~~  183 (505)
T TIGR00898       110 TFSSTIVTEWDLVCEDAWKVDLTQSCFFVGVLLGSFVFGYLSDRFGRKKVL------LLSTLVTAVSGVLTAFSPNYTVF  183 (505)
T ss_pred             cccccEEEEecceechHHHHHHHHHHHHHHHHHHHHhHHHhhhhccchHHH------HHHHHHHHHHHHHHHHcccHHHH
Confidence            3456777888886   4443  78889999999999999999999998655      556666666655554 4556678


Q ss_pred             HHHHHHHHHHhhhhhhhHHHHHHHhhCCCchhhHHHHHHhHhhhhHHHhhhhHHHHHhhhhhhhhhhhhhhccCCCCCcc
Q 017795          231 YVTTVLVGLSYGAHWAIVPAAASELFGLKSFGALYNFLTLASPAGSLIFSGVIASGIYDYYAEKQAGLLWKYNGNMLPVS  310 (366)
Q Consensus       231 ~~~~~l~G~~~g~~~~~~~~~~se~f~~~~~g~~~g~~~~~~~~G~~i~gp~i~G~l~d~~~~~~~~~~~~~~~~~~~~~  310 (366)
                      ++++++.|++.++.++...++++|.++.++|+.+.++...+..+|..+ +|.+++.+.   +                  
T Consensus       184 ~~~r~l~G~~~~~~~~~~~~~~~e~~~~~~r~~~~~~~~~~~~~g~~~-~~~~~~~~~---~------------------  241 (505)
T TIGR00898       184 LVFRLLVGMGIGGIWVQAVVLNTEFLPKKQRAIVGTLIQVFFSLGLVL-LPLVAYFIP---D------------------  241 (505)
T ss_pred             HHHHHHHHhhccchHHHHHHHhheecChhhhHHHHHHHHHHHHHHHHH-HHHHHHHhh---H------------------
Confidence            889999999999999999999999999999999999998888888885 787765542   2                  


Q ss_pred             cCCCCCCcccCCcchHHHHHHHHHHHHHHHHHH
Q 017795          311 FRDQETPTCLGSICYSITCGIMAGLCIIAMVMS  343 (366)
Q Consensus       311 ~~~~~~~~c~g~~~~~~~f~i~~~~~~~~~~~~  343 (366)
                                    ||+.|++.++.+++..+..
T Consensus       242 --------------wr~~~~~~~i~~~~~~~~~  260 (505)
T TIGR00898       242 --------------WRWLQLAVSLPTFLFFLLS  260 (505)
T ss_pred             --------------HHHHHHHHHHHHHHHHHHH
Confidence                          9999998887777665555

>TIGR00806 rfc RFC reduced folate carrier

Probab=99.20  E-value=7e-10  Score=109.99  Aligned_cols=161  Identities=10%  Similarity=0.042  Sum_probs=125.5

Q ss_pred             HHhcHHHHHHHhCCChhH-H--HHHHHHHHHhhhhhhhhhhhhhhhhhccCchhHHHHHHHHHHHHHHHHHH-hcchhHH
Q 017795          155 VIDNLGQICQSLGYADTS-I--YVSMISIWNFLGRVGGGYFSEAIVRKFAYPRPVAMAVAQVVMAFALLYYA-IGWPGEI  230 (366)
Q Consensus       155 ~~~~l~~i~~~~g~~~~~-~--~~sl~~i~~~~g~~~~G~lsD~~grr~~~~R~~~~~~~~~~~~~~~~l~~-~~~~~~l  230 (366)
                      .....|++.+++|++..+ .  ..+.+..+..+..+.+|+++||+|-|+.+      ..+.+.-.+..++.. ..+...+
T Consensus        45 ~s~a~p~L~~elglT~~qv~G~I~s~F~ysYal~qIp~GlLaDrlG~K~vL------~l~~l~Wsl~t~L~~fa~Sl~~L  118 (511)
T TIGR00806        45 ESFITPYLLTVLNFTEETVTNEIIPVLPYSHLAVLVPVFLLTDYLRYKPVL------VLQALSFVCVWLLLLLGTSVWHM  118 (511)
T ss_pred             HHHHHHHHHHHcCCCHHHhcchHHHHHHHHHHHHHHHHHHHHHHhCchHHH------HHHHHHHHHHHHHHHHHHHHHHH
Confidence            334567788899999888 4  78888889999999999999999987655      555555555555544 3356678


Q ss_pred             HHHHHHHHHHhhhhhhhHHHHHHHhhCCCchhhHHHHHHhHhhhhHHHhhhhHHHHHhhhhhhhhhhhhhhccCCCCCcc
Q 017795          231 YVTTVLVGLSYGAHWAIVPAAASELFGLKSFGALYNFLTLASPAGSLIFSGVIASGIYDYYAEKQAGLLWKYNGNMLPVS  310 (366)
Q Consensus       231 ~~~~~l~G~~~g~~~~~~~~~~se~f~~~~~g~~~g~~~~~~~~G~~i~gp~i~G~l~d~~~~~~~~~~~~~~~~~~~~~  310 (366)
                      .+..++.|++-|+.+ ....++...||+++|+++.++.+.+..+|.++ ++++++++. ..+.+                
T Consensus       119 ~i~R~llGvaEA~~~-A~~syI~~WfP~kER~ratsi~~sg~~vG~~I-a~~L~qll~-s~gWr----------------  179 (511)
T TIGR00806       119 QLMEVFYSVTMAARI-AYSSYIFSLVPPSRYQRAAAYSRAAVLLGVFL-SSVLGQLLV-TLGWI----------------  179 (511)
T ss_pred             HHHHHHHHHHHHHHH-HHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHH-hcCch----------------
Confidence            899999999999998 88889999999999999999999999999997 899988843 34411                


Q ss_pred             cCCCCCCcccCCcchHHHHHHHHHHHHHHHHHHHHHHhhcHHH
Q 017795          311 FRDQETPTCLGSICYSITCGIMAGLCIIAMVMSLIVVHRTKSV  353 (366)
Q Consensus       311 ~~~~~~~~c~g~~~~~~~f~i~~~~~~~~~~~~~~~~~~~r~~  353 (366)
                                   .|+...+|..+...+++++++++....|..
T Consensus       180 -------------~y~~Ln~Isl~s~~~a~~~a~~LP~~~~sl  209 (511)
T TIGR00806       180 -------------SYSTLNIISLVFMTFSVFLALFLKRPKRSL  209 (511)
T ss_pred             -------------hHHHHHHHHHHHHHHHHHHHHhCCCCchhh
Confidence                         266667777777777777777776555543

Proteins of the RFC family are so-far restricted to animals. RFC proteins possess 12 putative transmembrane a-helical spanners (TMSs) and evidence for a 12 TMS topology has been published for the human RFC. The RFC transporters appear to transport reduced folate by an energy-dependent, pH-dependent, Na+-independent mechanism. Folate:H+ symport, folate:OH- antiport and folate:anion antiport mechanisms have been proposed, but the energetic mechanism is not well defined.

>TIGR00805 oat sodium-independent organic anion transporter

Probab=99.20  E-value=9.6e-11  Score=122.16  Aligned_cols=133  Identities=14%  Similarity=0.110  Sum_probs=111.2

Q ss_pred             HHHHHhcHHHHHHHhCCChhHH--HHHHHHHHHhhhhhhhhhhhhhhhhhccCchhHHHHHHHHHHHHHHHHHHhcc---
Q 017795          152 GLTVIDNLGQICQSLGYADTSI--YVSMISIWNFLGRVGGGYFSEAIVRKFAYPRPVAMAVAQVVMAFALLYYAIGW---  226 (366)
Q Consensus       152 ~~~~~~~l~~i~~~~g~~~~~~--~~sl~~i~~~~g~~~~G~lsD~~grr~~~~R~~~~~~~~~~~~~~~~l~~~~~---  226 (366)
                      ...+...++++.+++++++.+.  +.+.+.++..++.++.|++.||++||+.+      .++.++++++.++++..+   
T Consensus        49 ~g~~~~~l~~iek~F~lss~~~G~i~s~~~i~~~~~~i~v~~~~~r~~r~~~i------~~g~ll~~lg~ll~alphf~~  122 (633)
T TIGR00805        49 NGLVNSSLTTIERRFKLSTSSSGLINGSYEIGNLLLIIFVSYFGTKLHRPIVI------GIGCAIMGLGSFLLSLPHFLS  122 (633)
T ss_pred             HHHHHhhchhhhhhhCCCCCcceeeeehhhHHHHHHHHHHHHhhcccCcceEE------EecHHHHHHHHHHHhChHHhc
Confidence            3345566888889999988776  88899999999999999999999998876      667777777766654221   


Q ss_pred             -------------------------------------------------hhHHHHHHHHHHHHhhhhhhhHHHHHHHhhC
Q 017795          227 -------------------------------------------------PGEIYVTTVLVGLSYGAHWAIVPAAASELFG  257 (366)
Q Consensus       227 -------------------------------------------------~~~l~~~~~l~G~~~g~~~~~~~~~~se~f~  257 (366)
                                                                       ...++++.++.|+|.+..+++..+++.|.++
T Consensus       123 ~~y~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~GiG~~~~~~~~~~~i~d~~~  202 (633)
T TIGR00805       123 GRYSYSTTVSSTGNLSSANSFLCMENLTQALRPTQCPSECQKQHKESLMWLLFLVSQLLRGIGATPIFPLGISYIDDFAK  202 (633)
T ss_pred             CCccccccccccccccccccccccCCCCCCccccccccccccccCCCceehhhHHHHHHHhccCCcchhcCchhhhccCC
Confidence                                                             1245678999999999999999999999999


Q ss_pred             CCchhhHHHHHHhHhhhhHHHhhhhHHHHHhhhh
Q 017795          258 LKSFGALYNFLTLASPAGSLIFSGVIASGIYDYY  291 (366)
Q Consensus       258 ~~~~g~~~g~~~~~~~~G~~i~gp~i~G~l~d~~  291 (366)
                      +++++...++.+....+|..+ |+.++|++.+.+
T Consensus       203 ~~~~~~~~~i~~~~~~iG~~l-G~llgg~l~~~~  235 (633)
T TIGR00805       203 SKNSPLYIGILESIAVFGPAF-GYLLGSFCLQIY  235 (633)
T ss_pred             ccccHHHHHHHHHHHHhhhHH-HHHHHHHHHhcc
Confidence            999999999999999999996 999999988654

Proteins of the OAT family catalyze the Na+-independent facilitated transport of organic anions such as bromosulfobromophthalein and prostaglandins as well as conjugated and unconjugated bile acids (taurocholate and cholate, respectively). These transporters have been characterized in mammals, but homologues are present in C. elegans and A. thaliana. Some of the mammalian proteins exhibit a high degree of tissue specificity. For example, the rat OAT is found at high levels in liver and kidney and at lower levels in other tissues. These proteins possess 10-12 putative a-helical transmembrane spanners. They may catalyze electrogenic anion uniport or anion exchange.

>PRK10133 L-fucose transporter; Provisional

Probab=99.20  E-value=1.7e-09  Score=108.17  Aligned_cols=145  Identities=15%  Similarity=0.047  Sum_probs=115.0

Q ss_pred             HHHHHHHHHHHhhhhHHHHHhcHHHHHHHhCCChhHH--HHHHHHHHHhhhhhhhhhhhhhhhhhccCchhHHHHHHHHH
Q 017795          137 DFLLLFFSLVLASGSGLTVIDNLGQICQSLGYADTSI--YVSMISIWNFLGRVGGGYFSEAIVRKFAYPRPVAMAVAQVV  214 (366)
Q Consensus       137 ~~~ll~~~~~~~~~~~~~~~~~l~~i~~~~g~~~~~~--~~sl~~i~~~~g~~~~G~lsD~~grr~~~~R~~~~~~~~~~  214 (366)
                      .++++++.++............+|++.+++|.+..+.  ..+.+.++..++.+..|+++||+|||+..      ..+.++
T Consensus        27 ~~~~~~~~~~~~~~~~~~~~~~~p~i~~~~~~s~~~~gl~~~~~~~g~~i~~~~~g~l~dr~G~r~~l------~~g~~~  100 (438)
T PRK10133         27 PFALLCSLFFLWAVANNLNDILLPQFQQAFTLTNFQAGLIQSAFYFGYFIIPIPAGILMKKLSYKAGI------ITGLFL  100 (438)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcHHHH------HHHHHH
Confidence            4556666666655666667778999988999988776  78888999999999999999999998766      677777


Q ss_pred             HHHHHHHH---H-hcchhHHHHHHHHHHHHhhhhhhhHHHHHHHhhCCCchhhHHHHHHhHhhhhHHHhhhhHHHHHh
Q 017795          215 MAFALLYY---A-IGWPGEIYVTTVLVGLSYGAHWAIVPAAASELFGLKSFGALYNFLTLASPAGSLIFSGVIASGIY  288 (366)
Q Consensus       215 ~~~~~~l~---~-~~~~~~l~~~~~l~G~~~g~~~~~~~~~~se~f~~~~~g~~~g~~~~~~~~G~~i~gp~i~G~l~  288 (366)
                      .+++.+++   . ..+...+++++++.|+|.|...+.....+.|..+.++++...++......+|..+ ||.+++.+.
T Consensus       101 ~~~~~~l~~~~~~a~~~~~ll~~r~l~G~g~g~~~~~~~~~v~~~~~~~~~~~~~s~~~~~~~~G~~~-g~~~g~~l~  177 (438)
T PRK10133        101 YALGAALFWPAAEIMNYTLFLVGLFIIAAGLGCLETAANPFVTVLGPESSGHFRLNLAQTFNSFGAII-AVVFGQSLI  177 (438)
T ss_pred             HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHhhHHHHHHHhCChhhHHHHHHHHHHHHHHHHHH-HHHHHHHHH
Confidence            77776654   2 3455677889999999999999999998888766666666788999999999996 888877654

>PRK06814 acylglycerophosphoethanolamine acyltransferase; Provisional

Probab=99.19  E-value=5.6e-10  Score=123.97  Aligned_cols=159  Identities=9%  Similarity=0.056  Sum_probs=108.8

Q ss_pred             HHhhhhHHHHHHHHHHHhhhhHHHHHhcHHH-----HHHHhCCChhHH---HHHHHHHHHhhhhhhhhhhhhhhhhhccC
Q 017795          131 QALMKADFLLLFFSLVLASGSGLTVIDNLGQ-----ICQSLGYADTSI---YVSMISIWNFLGRVGGGYFSEAIVRKFAY  202 (366)
Q Consensus       131 ~~l~~~~~~ll~~~~~~~~~~~~~~~~~l~~-----i~~~~g~~~~~~---~~sl~~i~~~~g~~~~G~lsD~~grr~~~  202 (366)
                      ..+++.+|+.+++..+++..........++.     +..+.+.+....   ..+++.+...+..+++|+++||++||+.+
T Consensus         6 ~l~~~~~f~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~l~~~~~G~laDr~~rk~~~   85 (1140)
T PRK06814          6 YLMKSRRFAPLFWTQFFGAFNDNFLKNALVILILYGLSGALGAYNNALVTLAGAVFILPFFIFSALAGQLADKYDKAKLA   85 (1140)
T ss_pred             hhhhccccHHHHHHHHHhHHHHHHHHHHHHHHHHHHhccccccchHHHHHHHHHHHHHHHHHHhhhHHhhhhhccHHHHH
Confidence            3556667777666666655443322222221     112222222221   45566777888999999999999998643


Q ss_pred             chhHHHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHhhhhhhhHHHHHHHhhCCCchhhHHHHHHhHhhhhHHHhhhh
Q 017795          203 PRPVAMAVAQVVMAFALLYYAIGWPGEIYVTTVLVGLSYGAHWAIVPAAASELFGLKSFGALYNFLTLASPAGSLIFSGV  282 (366)
Q Consensus       203 ~R~~~~~~~~~~~~~~~~l~~~~~~~~l~~~~~l~G~~~g~~~~~~~~~~se~f~~~~~g~~~g~~~~~~~~G~~i~gp~  282 (366)
                      .  ....+..+++..+.+.+...+...+++++++.|++.+..++...+++.++++.++++.++++.+++..+|.++ ||.
T Consensus        86 ~--~~~~~~~~~~~~~~~~~~~~s~~~l~~~~~l~gi~~a~~~p~~~a~l~~~~~~~~~~~a~~~~~~~~~ig~~i-gp~  162 (1140)
T PRK06814         86 K--ILKFAEIGIAALAIYGFHLNSVPLLFAALFLMGIHSALFGPIKYSILPDHLNKDELLGANALVEAGTFIAILL-GTI  162 (1140)
T ss_pred             H--HHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhhchHHHHhhHhhcCccccchhhHHHHHHHHHHHHH-HHH
Confidence            1  1111222222222222233566788899999999999989999999999999999999999999999999996 999


Q ss_pred             HHHHHhhhhh
Q 017795          283 IASGIYDYYA  292 (366)
Q Consensus       283 i~G~l~d~~~  292 (366)
                      ++|++.+..+
T Consensus       163 l~g~l~~~~~  172 (1140)
T PRK06814        163 IGGLATISGN  172 (1140)
T ss_pred             HHHHHHhccc
Confidence            9999998766

>COG2807 CynX Cyanate permease [Inorganic ion transport and metabolism]

Probab=99.19  E-value=2e-09  Score=102.37  Aligned_cols=180  Identities=13%  Similarity=0.051  Sum_probs=132.0

Q ss_pred             CHHHHhhhhHHHHHHHHHHHhhhhHHHHHhcHHHHHHHhCCChhHH--HHHHHHHHHhhhhhhhhhhhhhhhhhccCchh
Q 017795          128 TLPQALMKADFLLLFFSLVLASGSGLTVIDNLGQICQSLGYADTSI--YVSMISIWNFLGRVGGGYFSEAIVRKFAYPRP  205 (366)
Q Consensus       128 ~~~~~l~~~~~~ll~~~~~~~~~~~~~~~~~l~~i~~~~g~~~~~~--~~sl~~i~~~~g~~~~G~lsD~~grr~~~~R~  205 (366)
                      +-...++++.-|.+.+.+.......+....|+|+|..|.|++..++  .+++..+......++.-.+.+|...    .|+
T Consensus       200 ~~~~vw~~~~aW~vtLfmGlqS~~~Y~~~~WLP~ili~~G~sa~~aG~llsl~~l~~~~~~ll~P~la~R~~n----~r~  275 (395)
T COG2807         200 SVRKVWRSPLAWQVTLFMGLQSLLYYIVIGWLPAILIDRGLSAAEAGSLLSLMQLAQLPTALLIPLLARRSKN----QRP  275 (395)
T ss_pred             cccccccCchhHHHHHHHHhhHHHHHHHHHHHHHHHHHcCCCHHHhhhHHHHHHHHHHHHHHHHHHHHHHhcc----cch
Confidence            3345789999999988888888889999999999999999998877  8999999999999999989887422    222


Q ss_pred             HHHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHhhhhhhhHHHHHHHhhCC-CchhhHHHHHHhHhhhhHHHhhhhHH
Q 017795          206 VAMAVAQVVMAFALLYYAIGWPGEIYVTTVLVGLSYGAHWAIVPAAASELFGL-KSFGALYNFLTLASPAGSLIFSGVIA  284 (366)
Q Consensus       206 ~~~~~~~~~~~~~~~l~~~~~~~~l~~~~~l~G~~~g~~~~~~~~~~se~f~~-~~~g~~~g~~~~~~~~G~~i~gp~i~  284 (366)
                      .. .....++.+|.+-+........+...++.|+|.|+.+++.-..+.+.... +..+...|+....+.+=+.+ ||.+.
T Consensus       276 ~~-~~~~~~~l~G~~G~~~~P~~~~~lw~~llG~G~G~~F~laL~li~~rs~~a~~Aa~LSgmaQg~GYllAa~-GP~l~  353 (395)
T COG2807         276 LV-VLALLLMLVGLVGLLLAPGQLPILWALLLGLGQGGAFPLALTLILLRSSDAAIAAALSGMAQGVGYLLAAF-GPWLF  353 (395)
T ss_pred             HH-HHHHHHHHHHHHHHHHhhhhHHHHHHHHHhCccchHHHHHHHHHHhhcCChHHHHHHHHHhhhhhHHHHhh-hhhhH
Confidence            22 33333333333332221112222336899999999999999988887654 44667777777777777774 99999


Q ss_pred             HHHhhhhhhhhhhhhhhccCCCCCcccCCCCCCcccCCcchHHHHHHHHHHHHHHHHHHH
Q 017795          285 SGIYDYYAEKQAGLLWKYNGNMLPVSFRDQETPTCLGSICYSITCGIMAGLCIIAMVMSL  344 (366)
Q Consensus       285 G~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~g~~~~~~~f~i~~~~~~~~~~~~~  344 (366)
                      |++.|.+|                               +|...++..+.+.++..+..+
T Consensus       354 G~lhDa~g-------------------------------sw~~~~~~l~~~~i~m~i~Gl  382 (395)
T COG2807         354 GFLHDATG-------------------------------SWSAPLVLLALATLLMLIFGL  382 (395)
T ss_pred             hHHHHhcC-------------------------------ChHHHHHHHHHHHHHHHHHHh
Confidence            99999998                               599998877766555444443

>PRK15011 sugar efflux transporter B; Provisional

Probab=99.18  E-value=1.6e-09  Score=106.39  Aligned_cols=176  Identities=11%  Similarity=0.028  Sum_probs=110.9

Q ss_pred             hhHHHHHHHHHHHhhhhHHHHHhcHHHH-HHHhCCChhHH--HHHHHHH-HHhhhhhhhhhhhhhhhhhccCchhHHHHH
Q 017795          135 KADFLLLFFSLVLASGSGLTVIDNLGQI-CQSLGYADTSI--YVSMISI-WNFLGRVGGGYFSEAIVRKFAYPRPVAMAV  210 (366)
Q Consensus       135 ~~~~~ll~~~~~~~~~~~~~~~~~l~~i-~~~~g~~~~~~--~~sl~~i-~~~~g~~~~G~lsD~~grr~~~~R~~~~~~  210 (366)
                      +...|.+++..++...........+|.+ .+++|.+.++.  ..+...+ +..++.+.+|+ +||+|||+..     +..
T Consensus        14 ~~~~~~~~~~~~~~~~~~~~~~p~~~~~l~~~~~~s~~~~g~~~~~~~~~~~~~~~~~~~~-~dr~g~r~~~-----~~~   87 (393)
T PRK15011         14 DLTSTAFLIVAFLTGIAGALQTPTLSIFLTDEVHARPAMVGFFFTGSAVIGILVSQFLAGR-SDKRGDRKSL-----IVF   87 (393)
T ss_pred             cchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHHHHHHHHH-HhcccchhHH-----HHH
Confidence            4456666666666666555556666665 46789988776  3344444 44455555666 9999987643     133


Q ss_pred             HHHHHHHHHHHHHh-cchhHHHHHHHHHHHHhhhhhhhHHHHHHHhhCCCch--hhHHHHHHhHhhhhHHHhhhhHHHHH
Q 017795          211 AQVVMAFALLYYAI-GWPGEIYVTTVLVGLSYGAHWAIVPAAASELFGLKSF--GALYNFLTLASPAGSLIFSGVIASGI  287 (366)
Q Consensus       211 ~~~~~~~~~~l~~~-~~~~~l~~~~~l~G~~~g~~~~~~~~~~se~f~~~~~--g~~~g~~~~~~~~G~~i~gp~i~G~l  287 (366)
                      +.++.+++..+++. .+...+++...+.+...+...+....++.+..+.+.+  +...++.+.+..+|..+ ||.++|++
T Consensus        88 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lg~~~-g~~i~~~l  166 (393)
T PRK15011         88 CCLLGVLACTLFAWNRNYFVLLFVGVFLSSFGSTANPQMFALAREHADKTGREAVMFSSFLRAQVSLAWVI-GPPLAYAL  166 (393)
T ss_pred             HHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhhhccchHHHHHHHHHHHHHHHHHH-hhHHHHHH
Confidence            33444444444443 2333333343344333344556666677776665544  33447788889999996 99999999


Q ss_pred             hhhhhhhhhhhhhhccCCCCCcccCCCCCCcccCCcchHHHHHHHHHHHHHHHHHHHHHHhh
Q 017795          288 YDYYAEKQAGLLWKYNGNMLPVSFRDQETPTCLGSICYSITCGIMAGLCIIAMVMSLIVVHR  349 (366)
Q Consensus       288 ~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~g~~~~~~~f~i~~~~~~~~~~~~~~~~~~  349 (366)
                      .+..+                                ||..|++.++++++.++..++..++
T Consensus       167 ~~~~g--------------------------------w~~~f~~~~~~~~~~~~~~~~~~~~  196 (393)
T PRK15011        167 AMGFS--------------------------------FTVMYLSAAVAFIVCGVMVWLFLPS  196 (393)
T ss_pred             HHhcC--------------------------------hHHHHHHHHHHHHHHHHHHHhhcCc
Confidence            98777                                9999999988777766665554443

>PRK10213 nepI ribonucleoside transporter; Reviewed

Probab=99.17  E-value=3.4e-09  Score=104.35  Aligned_cols=157  Identities=8%  Similarity=0.030  Sum_probs=106.1

Q ss_pred             CHHHHhhhhHHHHHHHHHHHhhhhHHHHHhcH-HHHHHHhCCChhHH--HHHHHHHHHhhhhhhhhhhhhhhhhhccCch
Q 017795          128 TLPQALMKADFLLLFFSLVLASGSGLTVIDNL-GQICQSLGYADTSI--YVSMISIWNFLGRVGGGYFSEAIVRKFAYPR  204 (366)
Q Consensus       128 ~~~~~l~~~~~~ll~~~~~~~~~~~~~~~~~l-~~i~~~~g~~~~~~--~~sl~~i~~~~g~~~~G~lsD~~grr~~~~R  204 (366)
                      +.++.++++.+|...+..++..........++ |.+.+++|++....  ..+...++..+|+++.|++.||.+++     
T Consensus       208 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~g~s~~~~g~~~~~~~~~~iig~~~~~~l~~r~~~~-----  282 (394)
T PRK10213        208 NTFRLLQRPGVMAGMIAIFMSFAGQFAFFTYIRPVYMNLAGFGVDGLTLVLLSFGIASFVGTSLSSFILKRSVKL-----  282 (394)
T ss_pred             HHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChhHHHHHHHHHHHHHHHHHHHHHHHHhccchh-----
Confidence            35678889999887666555554444444454 66777889887654  56667778888888888888874322     


Q ss_pred             hHHHHHHHHHHHHHHHHHH-hcchhHHHHHHHHHHHHhhhhhhhHHHHHHHhhCCCchhhHHHHHHhHhhhhHHHhhhhH
Q 017795          205 PVAMAVAQVVMAFALLYYA-IGWPGEIYVTTVLVGLSYGAHWAIVPAAASELFGLKSFGALYNFLTLASPAGSLIFSGVI  283 (366)
Q Consensus       205 ~~~~~~~~~~~~~~~~l~~-~~~~~~l~~~~~l~G~~~g~~~~~~~~~~se~f~~~~~g~~~g~~~~~~~~G~~i~gp~i  283 (366)
                       .......+..+.+.++.. ..+...+++..++.|++.+...+...+.+.+..+ ++.+...++......+|..+ ||.+
T Consensus       283 -~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~G~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~lg~~~-G~~l  359 (394)
T PRK10213        283 -ALAGAPLVLAVSALVLTLWGSDKIVATGVAIIWGLTFALVPVGWSTWITRSLA-DQAEKAGSIQVAVIQLANTC-GAAI  359 (394)
T ss_pred             -HHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHhhhHHHHHHHHHHCc-ccHHHHHHHHHHHHHHHHHH-HHHH
Confidence             111222222333333322 3344556667778898888877777777777775 55667777777777889886 9999


Q ss_pred             HHHHhhhhh
Q 017795          284 ASGIYDYYA  292 (366)
Q Consensus       284 ~G~l~d~~~  292 (366)
                      +|+++|..+
T Consensus       360 ~G~l~~~~g  368 (394)
T PRK10213        360 GGYALDNIG  368 (394)
T ss_pred             HHHHHhccC
Confidence            999999877

>KOG3764 consensus Vesicular amine transporter [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.17  E-value=1e-10  Score=112.09  Aligned_cols=139  Identities=16%  Similarity=0.170  Sum_probs=124.5

Q ss_pred             HHHHHHHHHhhhhhhhhhhhhhhhhhccCchhHHHHHHHHHHHHHHHHHHhcc-hhHHHHHHHHHHHHhhhhhhhHHHHH
Q 017795          174 YVSMISIWNFLGRVGGGYFSEAIVRKFAYPRPVAMAVAQVVMAFALLYYAIGW-PGEIYVTTVLVGLSYGAHWAIVPAAA  252 (366)
Q Consensus       174 ~~sl~~i~~~~g~~~~G~lsD~~grr~~~~R~~~~~~~~~~~~~~~~l~~~~~-~~~l~~~~~l~G~~~g~~~~~~~~~~  252 (366)
                      +.+...+.+.+..++.|.+.||+|+|..+      .+++.++....+++++.+ ...+++++.+.|+|.+..++...+++
T Consensus       111 LFaskA~~qllvnp~~G~l~~~iGy~ipm------~~Gl~vmf~sTilFafg~sy~~l~vAR~LQgvgsA~~~tsglaml  184 (464)
T KOG3764|consen  111 LFASKALVQLLVNPFFGNLIDRIGYKIPM------VAGLFVMFLSTILFAFGNSYPMLFVARSLQGVGSAFADTSGLAML  184 (464)
T ss_pred             HHHHHHHHHHHhcccchhhHHHhccccHH------HHHHHHHHHHHHHHHHcchhHHHHHHHHHhhhhHHHHHhhhHHHH
Confidence            77888899999999999999999998655      899999999999998654 45788999999999999999999999


Q ss_pred             HHhhCCCc-hhhHHHHHHhHhhhhHHHhhhhHHHHHhhhhhhhhhhhhhhccCCCCCcccCCCCCCcccCCcchHHHHHH
Q 017795          253 SELFGLKS-FGALYNFLTLASPAGSLIFSGVIASGIYDYYAEKQAGLLWKYNGNMLPVSFRDQETPTCLGSICYSITCGI  331 (366)
Q Consensus       253 se~f~~~~-~g~~~g~~~~~~~~G~~i~gp~i~G~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~g~~~~~~~f~i  331 (366)
                      +|.|+.++ ||.++|+...+..+|-.+ ||+.+|.+||..|                                +...|++
T Consensus       185 Ad~f~~d~er~~vmGialgfislG~lv-gPpfGGilYe~~G--------------------------------k~aPFlV  231 (464)
T KOG3764|consen  185 ADVFPEDNERGSVMGIALGFISLGVLV-GPPFGGILYEFAG--------------------------------KSAPFLV  231 (464)
T ss_pred             HHHcccchhhhHHHHHHHHHHhcccee-cCCcccchHhhcC--------------------------------CcCcHHH
Confidence            99999876 799999999999999997 9999999999888                                8999999


Q ss_pred             HHHHHHHHHHHHHHHHhhcH
Q 017795          332 MAGLCIIAMVMSLIVVHRTK  351 (366)
Q Consensus       332 ~~~~~~~~~~~~~~~~~~~r  351 (366)
                      +++++++..++-+++...++
T Consensus       232 L~~v~Lld~~L~l~vi~p~~  251 (464)
T KOG3764|consen  232 LAIVLLLDGALQLLVIEPTE  251 (464)
T ss_pred             HHHHHHHHHHHHHheeCccc
Confidence            99999998888887766543

>PRK10054 putative transporter; Provisional

Probab=99.16  E-value=5.5e-10  Score=109.98  Aligned_cols=156  Identities=9%  Similarity=-0.050  Sum_probs=105.4

Q ss_pred             HHHHhhhhHHHHHHHHHHHhhhhHHHHHhcHHHHHHH---hCCChhHH--HHHHHHHHHhhhhhhhhhhhhhhhhhccCc
Q 017795          129 LPQALMKADFLLLFFSLVLASGSGLTVIDNLGQICQS---LGYADTSI--YVSMISIWNFLGRVGGGYFSEAIVRKFAYP  203 (366)
Q Consensus       129 ~~~~l~~~~~~ll~~~~~~~~~~~~~~~~~l~~i~~~---~g~~~~~~--~~sl~~i~~~~g~~~~G~lsD~~grr~~~~  203 (366)
                      .++.++++.+|.+.+..++.......+..+++.+...   .+.+....  ..+...+.....++..|.++||.++|+.. 
T Consensus       199 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~~l-  277 (395)
T PRK10054        199 PSVLLQDKALLWFTCSGFLASFVSGAFASCISQYVMVVADSDFAEKVVAVVLPVNAAMVVSLQYSVGRRLNAANIRPLM-  277 (395)
T ss_pred             hhhhccCceehHHHHHHHHHHHHHHHhhhhHHHHHHHhcccchHHHHHHHHHHhhhhheeeehhHHHHHHccCCchhHH-
Confidence            3567788888877766666555544454566666543   23333322  44444445555667778888988776543 


Q ss_pred             hhHHHHHHHHHHHHHHHHHHh--cchhHHHHHHHHHHHHhhhhhhhHHHHHHHhhCCCchhhHHHHHHhHhhhhHHHhhh
Q 017795          204 RPVAMAVAQVVMAFALLYYAI--GWPGEIYVTTVLVGLSYGAHWAIVPAAASELFGLKSFGALYNFLTLASPAGSLIFSG  281 (366)
Q Consensus       204 R~~~~~~~~~~~~~~~~l~~~--~~~~~l~~~~~l~G~~~g~~~~~~~~~~se~f~~~~~g~~~g~~~~~~~~G~~i~gp  281 (366)
                           ..+.++.+++...+..  .+...+++..++.|+|.+...+...+.+.+..+++.+++.++..+ ...+|..+ ||
T Consensus       278 -----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~p~~~~~~~~~~p~~~~~~~~~~~~-~~~~G~~~-Gp  350 (395)
T PRK10054        278 -----TAGTLCFVIGLVGFIFSGNSLLLWGMSAAVFTVGEIIYAPGEYMLIDHIAPPGMKASYFSAQS-LGWLGAAI-NP  350 (395)
T ss_pred             -----HHHHHHHHHHHHHHHHcchHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhCCcccceehHhHHH-HHHHHHHH-HH
Confidence                 5555666666555543  233345567778888887777777788889999889999988765 45588886 99


Q ss_pred             hHHHHHhhhhh
Q 017795          282 VIASGIYDYYA  292 (366)
Q Consensus       282 ~i~G~l~d~~~  292 (366)
                      .++|.++|..+
T Consensus       351 ~~~G~l~~~~g  361 (395)
T PRK10054        351 LVSGVILTTLP  361 (395)
T ss_pred             HHHHHHHHHcC
Confidence            99999999887

>TIGR00902 2A0127 phenyl proprionate permease family protein

Probab=99.16  E-value=1.6e-09  Score=106.07  Aligned_cols=147  Identities=16%  Similarity=0.147  Sum_probs=105.1

Q ss_pred             HHHHHHHHHhhhhHHHHHhcHHHHHHHhCCChhHH--HHHHHHHHHhhhhhhhhhhhhhhhhhccCchhHHHHHHHHHHH
Q 017795          139 LLLFFSLVLASGSGLTVIDNLGQICQSLGYADTSI--YVSMISIWNFLGRVGGGYFSEAIVRKFAYPRPVAMAVAQVVMA  216 (366)
Q Consensus       139 ~ll~~~~~~~~~~~~~~~~~l~~i~~~~g~~~~~~--~~sl~~i~~~~g~~~~G~lsD~~grr~~~~R~~~~~~~~~~~~  216 (366)
                      +.+.+.+++.......+...+|.+.+++|++..++  ..+...+...++.+++|+++||++|+... ++.. ..+..+..
T Consensus         7 ~~l~~~~~~~~~~~~~~~p~l~~~l~~~g~s~~~ig~~~s~~~~~~~~~~~~~g~l~d~~~~~~~~-~~~~-~~~~~l~~   84 (382)
T TIGR00902         7 RWLALGFFGYFCAYGIFLPFFPAWLKGIGLGEEMIGLLIGAALIARFAGGLFFAPLIKDANHIIIA-LRLL-ALASAIFA   84 (382)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHH-HHHH-HHHHHHHH
Confidence            33445555555555556778999999999998877  77888899999999999999999875432 1111 11222222


Q ss_pred             HHHHHHH-hcchhHHHHHHHHHHHHhhhhhhhHHHHHHHhhCCCchhhHHHHHHhHhhhhHHHhhhhHHHHHhhhhh
Q 017795          217 FALLYYA-IGWPGEIYVTTVLVGLSYGAHWAIVPAAASELFGLKSFGALYNFLTLASPAGSLIFSGVIASGIYDYYA  292 (366)
Q Consensus       217 ~~~~l~~-~~~~~~l~~~~~l~G~~~g~~~~~~~~~~se~f~~~~~g~~~g~~~~~~~~G~~i~gp~i~G~l~d~~~  292 (366)
                      +  .+.. ..+.+.+++..++.+.+.+...+...+++.+ + .++++..+|.......+|..+ +|.++|++.+..+
T Consensus        85 ~--~~~~~~~~~~~l~~~~~l~~~~~~~~~p~~~al~~~-~-~~~~~~~~g~~~~~~slG~~~-g~~l~g~l~~~~g  156 (382)
T TIGR00902        85 A--AFSAGAHNAWLLFIAIGLFALFFSAGMPIGDALANT-W-QKQFGLDYGKVRLIGSAAFII-GSALFGGLIGMFD  156 (382)
T ss_pred             H--HHHHhhhhHHHHHHHHHHHHHHHccchhHHHHHHHH-H-HHHcCCCccHHHHHHHHHHHH-HHHHHHHHHHHcC
Confidence            1  1222 3445566677777888877777777776655 3 577899999999999999996 9999999999887

This family of proteins is involved in the uptake of 3-phenylpropionic acid. This uptake mechanism is for the metabolism of phenylpropanoid compounds and plays an important role in the natural degradative cycle of these aromatic molecules.

>PRK08633 2-acyl-glycerophospho-ethanolamine acyltransferase; Validated

Probab=99.15  E-value=9.5e-10  Score=121.96  Aligned_cols=152  Identities=14%  Similarity=0.135  Sum_probs=110.3

Q ss_pred             HhhhhHHHHHHHHHHHhhhhHHHHHhc-HHHHHHHhCCChhHH----HHHHHHHHHhhhhhhhhhhhhhhhhhccCchhH
Q 017795          132 ALMKADFLLLFFSLVLASGSGLTVIDN-LGQICQSLGYADTSI----YVSMISIWNFLGRVGGGYFSEAIVRKFAYPRPV  206 (366)
Q Consensus       132 ~l~~~~~~ll~~~~~~~~~~~~~~~~~-l~~i~~~~g~~~~~~----~~sl~~i~~~~g~~~~G~lsD~~grr~~~~R~~  206 (366)
                      .+++..|+.++++.++.......+... .+.+..+++.+....    ..+++.+...++.+++|+++||+|||+.+    
T Consensus         5 ~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~G~l~Dr~grk~~l----   80 (1146)
T PRK08633          5 LLKIIGFLPLLLTQFLNAFNDLGHKILIQNTLIKAYDGSEQVILTAIVNALFLLPFLLLSSPAGFLADKFSKNRVI----   80 (1146)
T ss_pred             hhhhhhhHHHHHHHHHhHHHHHHHHHHHHHHHHHHcCcccHHHHHHHHHHHHHHHHHHHhhhHhhhcccccHHHHH----
Confidence            456677777777766655444333333 333445566554332    56777888889999999999999998755    


Q ss_pred             HHHHHHHHHHHHHH---HH-HhcchhHHHHHHHHHHHHhhhhhhhHHHHHHHhhCCCchhhHHHHHHhHhhhhHHHhhhh
Q 017795          207 AMAVAQVVMAFALL---YY-AIGWPGEIYVTTVLVGLSYGAHWAIVPAAASELFGLKSFGALYNFLTLASPAGSLIFSGV  282 (366)
Q Consensus       207 ~~~~~~~~~~~~~~---l~-~~~~~~~l~~~~~l~G~~~g~~~~~~~~~~se~f~~~~~g~~~g~~~~~~~~G~~i~gp~  282 (366)
                        ..+.++.++..+   +. ...+...++++.++.|++.+...+...++++|+++.++++.++++..++..+|..+ ||.
T Consensus        81 --~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~ig~~l-g~~  157 (1146)
T PRK08633         81 --RIVKLFEVGLTLLIVLAYYLGWFWLAFAVTFLLGAQSAIYSPAKYGIIPELVGKENLSRANGLLEAFTIVAILA-GTA  157 (1146)
T ss_pred             --HHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHhhchHHHhhhHHhcCcccchhhhhHHHHHHHHHHHH-HHH
Confidence              333322222211   11 13455678888999999999988999999999999999999999999999999996 999


Q ss_pred             HHHHHhhh
Q 017795          283 IASGIYDY  290 (366)
Q Consensus       283 i~G~l~d~  290 (366)
                      ++|++.+.
T Consensus       158 l~~~l~~~  165 (1146)
T PRK08633        158 LFSFLFES  165 (1146)
T ss_pred             HHHHHHHh
Confidence            99999876

>COG3104 PTR2 Dipeptide/tripeptide permease [Amino acid transport and metabolism]

Probab=99.15  E-value=4.8e-10  Score=110.65  Aligned_cols=170  Identities=21%  Similarity=0.303  Sum_probs=132.5

Q ss_pred             HHHHHHHHHHhhhhHHHHHhcHHHHH-HH----hCCChhHH--HHHHHHHHHhhhhhhhhhhhhhh-hhhccCchhHHHH
Q 017795          138 FLLLFFSLVLASGSGLTVIDNLGQIC-QS----LGYADTSI--YVSMISIWNFLGRVGGGYFSEAI-VRKFAYPRPVAMA  209 (366)
Q Consensus       138 ~~ll~~~~~~~~~~~~~~~~~l~~i~-~~----~g~~~~~~--~~sl~~i~~~~g~~~~G~lsD~~-grr~~~~R~~~~~  209 (366)
                      +|+++..=++=-++.+++-..+-.++ .+    +|++++++  ..+.+...-.+..+++||++||+ |+|+.+      +
T Consensus        23 l~~if~vE~WERFsyYGmraiL~~Yl~~~~~~gLg~~~~~A~~l~~~y~slVY~t~i~GG~laDr~LG~~~tI------~   96 (498)
T COG3104          23 LYLIFFVELWERFSYYGMRAILILYLYYQLGDGLGFDETHATGLFSAYGSLVYLTPIIGGWLADRVLGTRRTI------V   96 (498)
T ss_pred             HHHHHHHHHHHHHhhhhhHHHHHHHHHHhccccCCcChHhhHHHHHHHHHHHHHHHHHHHHHHHHhcchhHHH------H
Confidence            45555554444444444433333333 23    45888776  77888888888999999999996 887776      8


Q ss_pred             HHHHHHHHHHHHHHhc---chhHHHHHHHHHHHHhhhhhhhHHHHHHHhhCCCc--hhhHHHHHHhHhhhhHHHhhhhHH
Q 017795          210 VAQVVMAFALLYYAIG---WPGEIYVTTVLVGLSYGAHWAIVPAAASELFGLKS--FGALYNFLTLASPAGSLIFSGVIA  284 (366)
Q Consensus       210 ~~~~~~~~~~~l~~~~---~~~~l~~~~~l~G~~~g~~~~~~~~~~se~f~~~~--~g~~~g~~~~~~~~G~~i~gp~i~  284 (366)
                      .+.+++.+|+++++..   .+..++++.+++++|.|..-+...+++.|.++++.  +-..+++..++.++|+++ +|++.
T Consensus        97 lGail~~iGh~~L~~~~~~~~~gl~i~L~~I~iG~Gl~K~NiS~llg~ly~~~DprrD~gFt~fY~~iNiGsl~-~p~i~  175 (498)
T COG3104          97 LGAILMAIGHLVLAISSVSGPGGLYIGLALIIVGTGLFKPNISSLLGELYPKDDPRRDGGFTLFYMGINIGSLI-APIIT  175 (498)
T ss_pred             HHHHHHHHHHHHHhccccccccHHHHHHHHHHhccccccccHHHHHHHhcCCCCcccCCCccEEEEEeehHHHH-HHHHH
Confidence            8999999999998854   46789999999999999999999999999999764  778889999999999996 99999


Q ss_pred             HHHhhhhhhhhhhhhhhccCCCCCcccCCCCCCcccCCcchHHHHHHHHHHHHHHHHHHHHH
Q 017795          285 SGIYDYYAEKQAGLLWKYNGNMLPVSFRDQETPTCLGSICYSITCGIMAGLCIIAMVMSLIV  346 (366)
Q Consensus       285 G~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~g~~~~~~~f~i~~~~~~~~~~~~~~~  346 (366)
                      +++.+.++                                |...|.+.++-..++.+..++.
T Consensus       176 ~~~~~~~g--------------------------------~~~gF~~aavGm~~gl~~f~~~  205 (498)
T COG3104         176 GLLAINYG--------------------------------WHVGFGLAAVGMIIGLVIFLLG  205 (498)
T ss_pred             HHHHHhhC--------------------------------HHHHHHHHHHHHHHHHHHHHHc
Confidence            99999887                                9999988877666665555443

>PRK15402 multidrug efflux system translocase MdfA; Provisional

Probab=99.15  E-value=3e-09  Score=104.69  Aligned_cols=156  Identities=13%  Similarity=-0.106  Sum_probs=107.5

Q ss_pred             HHHHhhhhHHHHHHHHHHHhhhhHHHHHhcHHHHH-HHhCCChhHH--HHHHHHHHHhhhhhhhhhhhhhhhhhccCchh
Q 017795          129 LPQALMKADFLLLFFSLVLASGSGLTVIDNLGQIC-QSLGYADTSI--YVSMISIWNFLGRVGGGYFSEAIVRKFAYPRP  205 (366)
Q Consensus       129 ~~~~l~~~~~~ll~~~~~~~~~~~~~~~~~l~~i~-~~~g~~~~~~--~~sl~~i~~~~g~~~~G~lsD~~grr~~~~R~  205 (366)
                      +++.++++.+|...+..++............|.+. +++|++..+.  ......++..+|+++.|+++||+++|+..   
T Consensus       208 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~g~~~~~~g~~~~~~~~~~~~g~~~~g~l~~r~~~~~~~---  284 (406)
T PRK15402        208 YKLVLKNRRFVAGALALGLVSLPLLAWIALSPVILISGEQLSSYEYGLLQVPVFGALIAGNLTLARLTSRRPLRSLI---  284 (406)
T ss_pred             HHHHHcCcHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHH---
Confidence            35567888888877666555444444555567765 4578887654  34445567788999999999999886544   


Q ss_pred             HHHHHHHHHHHHHHHHHHh------cchhHHHHHHHHHHHHhhhhhhhHHHHHHHhhCCCchhhHHHHHHhHhhhhHHHh
Q 017795          206 VAMAVAQVVMAFALLYYAI------GWPGEIYVTTVLVGLSYGAHWAIVPAAASELFGLKSFGALYNFLTLASPAGSLIF  279 (366)
Q Consensus       206 ~~~~~~~~~~~~~~~l~~~------~~~~~l~~~~~l~G~~~g~~~~~~~~~~se~f~~~~~g~~~g~~~~~~~~G~~i~  279 (366)
                         .++.++++++.+++..      .+...+++..++.|++.+...+........ -.++++|+..+..++...+|..+ 
T Consensus       285 ---~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~g~~~~~~~~~~~~~~-~~~~~~g~~~~~~~~~~~~~~~~-  359 (406)
T PRK15402        285 ---RMGLWPMVAGLLLAALATVISSHAYLWLTAGLSLYAFGIGLANAGLYRLTLF-SSDVSKGTVSAAMGMLSMLIFTV-  359 (406)
T ss_pred             ---HHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHhhhHHHHHhh-hccccccHHHHHHHHHHHHHHHH-
Confidence               4455555554444331      122345566777888887766655544433 33478999999999999999986 


Q ss_pred             hhhHHHHHhhhhh
Q 017795          280 SGVIASGIYDYYA  292 (366)
Q Consensus       280 gp~i~G~l~d~~~  292 (366)
                      |+.++|.+++..+
T Consensus       360 g~~~~~~l~~~~~  372 (406)
T PRK15402        360 GIELSKHAYLGGG  372 (406)
T ss_pred             HHHHHHhcccCCc
Confidence            9999999998776

>PRK11902 ampG muropeptide transporter; Reviewed

Probab=99.14  E-value=2.6e-09  Score=105.19  Aligned_cols=153  Identities=17%  Similarity=0.100  Sum_probs=112.9

Q ss_pred             hHHHHHhcHHHHHHHhCCChhHH-HHHHHHHHHhhhhhhhhhhhhhh-----hhhccCchhHHHHHHHHHHHHHHHHHHh
Q 017795          151 SGLTVIDNLGQICQSLGYADTSI-YVSMISIWNFLGRVGGGYFSEAI-----VRKFAYPRPVAMAVAQVVMAFALLYYAI  224 (366)
Q Consensus       151 ~~~~~~~~l~~i~~~~g~~~~~~-~~sl~~i~~~~g~~~~G~lsD~~-----grr~~~~R~~~~~~~~~~~~~~~~l~~~  224 (366)
                      ........+|.+.++.|++.+++ ..+....- .+..+++|+++||+     |||+.     ++.++.++++++...+..
T Consensus        14 ~~~~~~~~~~~~l~~~g~~~~~ig~~~~~~~~-~~~~~l~g~~~Dr~~~~~~g~rr~-----~l~~~~~~~~l~~~~l~~   87 (402)
T PRK11902         14 PLALTSGTLQAWMTVEGLDIQTIGFFSLVGQA-YIFKFLWAPLMDRYTPPLLGRRRG-----WLLLTQVGLAASIAAMAF   87 (402)
T ss_pred             hHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHH-HHHHHHHHHHHHcccccCCCcchh-----HHHHHHHHHHHHHHHHHh
Confidence            33345567899999999999888 44444333 68899999999999     66432     335556666555555443


Q ss_pred             c----chhHHHHHHHHHHHHhhhhhhhHHHHHHHhhCCCchhhHHHHHHhHhhhhHHHhhhhHHHHHhhhh-hhhhhhhh
Q 017795          225 G----WPGEIYVTTVLVGLSYGAHWAIVPAAASELFGLKSFGALYNFLTLASPAGSLIFSGVIASGIYDYY-AEKQAGLL  299 (366)
Q Consensus       225 ~----~~~~l~~~~~l~G~~~g~~~~~~~~~~se~f~~~~~g~~~g~~~~~~~~G~~i~gp~i~G~l~d~~-~~~~~~~~  299 (366)
                      .    +...+++..++.+++.+...+...++++|.+++++++.+.++...+..+|..+ ++.+++.+.+.. +       
T Consensus        88 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~al~~~~~~~~~r~~~~~~~~~g~~~g~i~-g~~l~~~l~~~~~g-------  159 (402)
T PRK11902         88 CPPHAALWPLAGLAVLVAFLSASQDIVFDAYSTDVLHPEERGAGAAVKVLGYRLAMLV-SGGLALWLADRVLG-------  159 (402)
T ss_pred             cCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcChhhhhHHHHHHHHHHHHHHHH-HhHHHHHHHhcccC-------
Confidence            2    12334555556677777777888899999999999999999999999999996 888899888754 4       


Q ss_pred             hhccCCCCCcccCCCCCCcccCCcchHHHHHHHHHHHHHHHHH
Q 017795          300 WKYNGNMLPVSFRDQETPTCLGSICYSITCGIMAGLCIIAMVM  342 (366)
Q Consensus       300 ~~~~~~~~~~~~~~~~~~~c~g~~~~~~~f~i~~~~~~~~~~~  342 (366)
                                               |+..|++.+++.++..+.
T Consensus       160 -------------------------w~~~f~i~a~~~l~~~l~  177 (402)
T PRK11902        160 -------------------------WGNTYLLMAGLMLAGALT  177 (402)
T ss_pred             -------------------------HHHHHHHHHHHHHHHHHH
Confidence                                     999999988877665544

>PRK11646 multidrug resistance protein MdtH; Provisional

Probab=99.13  E-value=3.2e-09  Score=104.67  Aligned_cols=158  Identities=10%  Similarity=0.097  Sum_probs=102.5

Q ss_pred             CHHHHhhhhHHHHHHHHHHHhhhhHHHHHhcHHHHHHHhCCChhHH--HHHHHHHHHhhhhhhhhhhhhh-hhhhccCch
Q 017795          128 TLPQALMKADFLLLFFSLVLASGSGLTVIDNLGQICQSLGYADTSI--YVSMISIWNFLGRVGGGYFSEA-IVRKFAYPR  204 (366)
Q Consensus       128 ~~~~~l~~~~~~ll~~~~~~~~~~~~~~~~~l~~i~~~~g~~~~~~--~~sl~~i~~~~g~~~~G~lsD~-~grr~~~~R  204 (366)
                      ++++.++++.++...+..+...........++|.+.++.+.++...  ..++..+...++....+.+.|+ ++.++    
T Consensus       200 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~g~l~~~~~~~~~~~~~~~~~~~~~r~~~~~----  275 (400)
T PRK11646        200 GMTRVLRDKRFVTYVLTLTGYYMLAVQVMLMLPIMVNDIAGSPSAVKWMYAIEACLSLTLLYPIARWSEKRFRLEH----  275 (400)
T ss_pred             HHHHHHcCchHHHHHHHHHHHHHHHHHHHHhhhhhHHhhcCCchHHHHHHHHHHHHHHHHHHHHHHHHHHhcchhH----
Confidence            4566778888876555444333333334567888888876555443  3444444444444334444443 33221    


Q ss_pred             hHHHHHHHHHHHHHHHHHH-hcchhHHHHHHHHHHHHhhhhhhhHHHHHHHhhCCCchhhHHHHHHhHhhhhHHHhhhhH
Q 017795          205 PVAMAVAQVVMAFALLYYA-IGWPGEIYVTTVLVGLSYGAHWAIVPAAASELFGLKSFGALYNFLTLASPAGSLIFSGVI  283 (366)
Q Consensus       205 ~~~~~~~~~~~~~~~~l~~-~~~~~~l~~~~~l~G~~~g~~~~~~~~~~se~f~~~~~g~~~g~~~~~~~~G~~i~gp~i  283 (366)
                        .+..+.++.+++.+++. ..+...+.+..++.+++.+...+...+++.+..|++.+|+.+|+.+....+|..+ ||.+
T Consensus       276 --~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~l~~~g~~~~~p~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~i-g~~l  352 (400)
T PRK11646        276 --RLMAGLLIMSLSMFPIGMVSNLQQLFTLICLFYIGSIIAEPARETLSASLADARARGSYMGFSRLGLALGGAI-GYIG  352 (400)
T ss_pred             --HHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHccHHHHHHhcCCcccchhhhhHHHHHHHHHHHh-cccc
Confidence              12445555555555544 3333444455567778877777778889999999999999999999999999996 9999


Q ss_pred             HHHHhhhhh
Q 017795          284 ASGIYDYYA  292 (366)
Q Consensus       284 ~G~l~d~~~  292 (366)
                      +|+++|..+
T Consensus       353 ~G~l~~~~~  361 (400)
T PRK11646        353 GGWLFDLGK  361 (400)
T ss_pred             hHHHHHHHh
Confidence            999999865

>PRK11128 putative 3-phenylpropionic acid transporter; Provisional

Probab=99.12  E-value=1.7e-09  Score=105.79  Aligned_cols=133  Identities=14%  Similarity=0.134  Sum_probs=97.6

Q ss_pred             HHHHhcHHHHHHHhCCChhHH--HHHHHHHHHhhhhhhhhhhhhhhhhhccCchhHHHHHHHHHHHHHHHHHH-hcchhH
Q 017795          153 LTVIDNLGQICQSLGYADTSI--YVSMISIWNFLGRVGGGYFSEAIVRKFAYPRPVAMAVAQVVMAFALLYYA-IGWPGE  229 (366)
Q Consensus       153 ~~~~~~l~~i~~~~g~~~~~~--~~sl~~i~~~~g~~~~G~lsD~~grr~~~~R~~~~~~~~~~~~~~~~l~~-~~~~~~  229 (366)
                      ..+...+|.+.+++|.+...+  .+++..+...++.+++|+++||++|+....|.. .. ...+..  ..... ..+.+.
T Consensus        21 g~~~p~l~~~l~~~g~s~~~iG~~~~~~~l~~~l~~~~~g~l~dr~g~~~~~~~~~-~~-~~~~~~--~~~~~~~~~~~~   96 (382)
T PRK11128         21 GVFLPFWSVWLKGQGYTPETIGLLLGAGLVARFLGSLLIAPRVKDPSQLIPALRLL-AL-LTLLFA--VAFWFGAHSFWL   96 (382)
T ss_pred             HHHhhhHHHHHHhcCCCHHHHHHHHHHHHHHHHhhhHHHHHHHhhhcchHHHHHHH-HH-HHHHHH--HHHHHhcccHHH
Confidence            446677889999999988776  888889999999999999999999854332221 11 111111  11222 244556


Q ss_pred             HHHHHHHHHHHhhhhhhhHHHHHHHhhCCCchhhHHHHHHhHhhhhHHHhhhhHHHHHhhhhh
Q 017795          230 IYVTTVLVGLSYGAHWAIVPAAASELFGLKSFGALYNFLTLASPAGSLIFSGVIASGIYDYYA  292 (366)
Q Consensus       230 l~~~~~l~G~~~g~~~~~~~~~~se~f~~~~~g~~~g~~~~~~~~G~~i~gp~i~G~l~d~~~  292 (366)
                      +++..++.|++.+...+...+++.+.  .++++.+++.......+|..+ ||.++|++.+..+
T Consensus        97 l~i~~~l~g~~~~~~~~~~~a~~~~~--~~~~~~a~~~~~~~~~lg~~i-gp~lgg~l~~~~g  156 (382)
T PRK11128         97 LFVAIGLFNLFFSPLVPLTDALANTW--QKQIGLDYGKVRLWGSIAFVI-GSALTGKLVSWFG  156 (382)
T ss_pred             HHHHHHHHHHHHcccccHHHHHHHHH--HhhccCCcchHHHHHHHHHHH-HHHHHHHHHHHcC
Confidence            66778888888888778777776665  456788888888888999996 9999999999887

>PRK10429 melibiose:sodium symporter; Provisional

Probab=99.12  E-value=4.4e-09  Score=106.04  Aligned_cols=155  Identities=10%  Similarity=0.059  Sum_probs=103.5

Q ss_pred             HHhhhhHHHHHHHHHHHhhhhHHHHHhcHHHHHHHhCCChhHH--HHHHHHHHHhhhhhhhhhhhhhhhhhccCchhHHH
Q 017795          131 QALMKADFLLLFFSLVLASGSGLTVIDNLGQICQSLGYADTSI--YVSMISIWNFLGRVGGGYFSEAIVRKFAYPRPVAM  208 (366)
Q Consensus       131 ~~l~~~~~~ll~~~~~~~~~~~~~~~~~l~~i~~~~g~~~~~~--~~sl~~i~~~~g~~~~G~lsD~~grr~~~~R~~~~  208 (366)
                      ..++++.++.+++..++............+++.+....+....  +.++..+...++.+++++++||+|+|+.+      
T Consensus       226 ~~~~n~~~~~ll~~~~~~~~~~~~~~~~~~y~~~y~~~~~~~~~~~~~~~~i~~ii~~~~~~~l~~r~gkk~~~------  299 (473)
T PRK10429        226 LIYKNDQLSCLLGMALAYNIASNIINGFAIYYFTYVIGDADLFPYYLSYAGAANLVTLILFPRLVKSLSRRILW------  299 (473)
T ss_pred             HHhcCHHHHHHHHHHHHHHHHHHHHhhheeeEEEEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcHHHH------
Confidence            3457777776666666555444444444444444432232222  45555577888999999999999997654      


Q ss_pred             HHHHHHHHHHHHHHH------hcchhHHHHHHHHHHHHhhhhhhhHHHHHHHh-------hCCCchhhHHHHHHhHhhhh
Q 017795          209 AVAQVVMAFALLYYA------IGWPGEIYVTTVLVGLSYGAHWAIVPAAASEL-------FGLKSFGALYNFLTLASPAG  275 (366)
Q Consensus       209 ~~~~~~~~~~~~l~~------~~~~~~l~~~~~l~G~~~g~~~~~~~~~~se~-------f~~~~~g~~~g~~~~~~~~G  275 (366)
                      .++.++.+++.+.+.      ..+...+++..++.|++.+..++..+++++|.       .|.+.-|..++..+...-+|
T Consensus       300 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~g~~~~~~~~~~~am~ad~id~~e~~tG~R~~G~~~s~~~~~~K~~  379 (473)
T PRK10429        300 AGASIFPVLSCGVLLLMGLAAPHNALLIVIAGILLNIGTALFWVLQVIMVADTVDYGEYKLGIRCESIAYSVQTMVVKGG  379 (473)
T ss_pred             HHHHHHHHHHHHHHHHHhccCchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhHhcCccchhHHHHHHHHHHHHH
Confidence            333333333322211      12233455666778899998888889999988       44566788999999999999


Q ss_pred             HHHhhhhHHHHHhhhhh
Q 017795          276 SLIFSGVIASGIYDYYA  292 (366)
Q Consensus       276 ~~i~gp~i~G~l~d~~~  292 (366)
                      ..+ |+.+.|++.+..|
T Consensus       380 ~al-~~~i~g~~l~~~G  395 (473)
T PRK10429        380 SAF-AAFFIGVVLGLIG  395 (473)
T ss_pred             HHH-HHHHHHHHHHHcC
Confidence            996 9999999998765

>TIGR00901 2A0125 AmpG-related permease

Probab=99.12  E-value=3.2e-09  Score=102.39  Aligned_cols=167  Identities=14%  Similarity=0.040  Sum_probs=112.2

Q ss_pred             HHhcHHHHHHHhCCChhHH-HHHHHHHHHhhhhhhhhhhhhhhhhhccCchhHHHHHHHHHHHHHHHHHHhc----chhH
Q 017795          155 VIDNLGQICQSLGYADTSI-YVSMISIWNFLGRVGGGYFSEAIVRKFAYPRPVAMAVAQVVMAFALLYYAIG----WPGE  229 (366)
Q Consensus       155 ~~~~l~~i~~~~g~~~~~~-~~sl~~i~~~~g~~~~G~lsD~~grr~~~~R~~~~~~~~~~~~~~~~l~~~~----~~~~  229 (366)
                      +...+|.+.+++|++.+++ ..+...+... ..+++|+++||+..|+.-+|+.++..+.++.++....++..    +...
T Consensus         7 ~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~-~~~~~g~~~Dr~~~~~~Grr~~~l~~~~~~~~~~~~~l~~~~~~~~l~~   85 (356)
T TIGR00901         7 VGNTLPYWLRSKNVSLKTIGFFSLVGLPYS-LKFLWSPLVDTVYLPFFGRRRSWLVLTQVLLLSLLLILSFLVPSTDLPL   85 (356)
T ss_pred             HHhHHHHHHHHcCCCHHHHHHHHHHHHHHH-HHHHHHHHHhcccCCCCCccHHHHHHHHHHHHHHHHHHHcCCcchhHHH
Confidence            4456888999999998876 4443333333 38999999999832211123333455555555554444322    2223


Q ss_pred             HHHHHHHHHHHhhhhhhhHHHHHHHhhCCCchhhHHHHHHhHhhhhHHHhhhhHHHHHhhhhhhhhhhhhhhccCCCCCc
Q 017795          230 IYVTTVLVGLSYGAHWAIVPAAASELFGLKSFGALYNFLTLASPAGSLIFSGVIASGIYDYYAEKQAGLLWKYNGNMLPV  309 (366)
Q Consensus       230 l~~~~~l~G~~~g~~~~~~~~~~se~f~~~~~g~~~g~~~~~~~~G~~i~gp~i~G~l~d~~~~~~~~~~~~~~~~~~~~  309 (366)
                      ++...++.+++.+...+...++++|.+++++|+.+.++...+..+|..+ ++.+++.+.+..+.++              
T Consensus        86 l~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~r~~~~~~~~~~~~~G~~~-~~~l~~~l~~~~g~~~--------------  150 (356)
T TIGR00901        86 LAGLAFLIAFFSATQDIALDAWRLEILSDEELGYGSTIYIVGYRAGMLL-SGSLALVLASPEFANT--------------  150 (356)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhCCHhhhchHHHHHHHHHHHHHHH-HHHHHHHHhhhccccc--------------
Confidence            4445556677777777777889999999999999999999999999996 8999998887665110              


Q ss_pred             ccCCCCCCcccCCcchHHHHHHHHHHHHHHHHHHHHHH
Q 017795          310 SFRDQETPTCLGSICYSITCGIMAGLCIIAMVMSLIVV  347 (366)
Q Consensus       310 ~~~~~~~~~c~g~~~~~~~f~i~~~~~~~~~~~~~~~~  347 (366)
                                .....||..|++.+++.+++.+..+++.
T Consensus       151 ----------~~~~~wr~~f~i~ai~~l~~~~~~~~~~  178 (356)
T TIGR00901       151 ----------GLITLWGYIFFWTALLILPGLLVTLFLA  178 (356)
T ss_pred             ----------ccccccHHHHHHHHHHHHHHHHHHHHhc
Confidence                      0123499999988877766555444333

>KOG2533 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism]

Probab=99.11  E-value=2e-09  Score=108.52  Aligned_cols=137  Identities=11%  Similarity=0.020  Sum_probs=93.6

Q ss_pred             CCHHHHhhhhHHHHHHHHHHHhhhhHHHHHhcHHHHHHH-hCCChhHH--HHHHHHHHHhhhhhhhhhhhhhhhhhccCc
Q 017795          127 FTLPQALMKADFLLLFFSLVLASGSGLTVIDNLGQICQS-LGYADTSI--YVSMISIWNFLGRVGGGYFSEAIVRKFAYP  203 (366)
Q Consensus       127 ~~~~~~l~~~~~~ll~~~~~~~~~~~~~~~~~l~~i~~~-~g~~~~~~--~~sl~~i~~~~g~~~~G~lsD~~grr~~~~  203 (366)
                      ..+++++++|..|.+.++++|.....+++.+|+|.+.++ .|++..++  +...+.++++++.+++|++|||+.. ....
T Consensus       264 ~~~~~a~~dp~vw~~~l~~~~~~lv~~~~~~~lpl~l~~~~~~s~~~a~~ls~~~~~~g~v~~i~ag~lsdr~~~-~~~~  342 (495)
T KOG2533|consen  264 KGFKEALKDPGVWPFSLCYFFLKLVNYGFSYWLPLYLKSNGGYSELQANLLSTPYDVGGIVGLILAGYLSDRLKT-IFAR  342 (495)
T ss_pred             HHHHHHHhchhHHHHHHHHHHHhhccccHHHHHHHHHHcCCCcChHHhccccchHHhhhHHHHHHHHHHHHHHhh-hHHH
Confidence            457789999999999999999999999999999999998 56887766  7788889999999999999999530 0001


Q ss_pred             hhHHHHHHHHHHHHHHHHHH-hcchhHHHHHHHHHHHHhhhhhhhHHHHHHHhhCCCchhhH
Q 017795          204 RPVAMAVAQVVMAFALLYYA-IGWPGEIYVTTVLVGLSYGAHWAIVPAAASELFGLKSFGAL  264 (366)
Q Consensus       204 R~~~~~~~~~~~~~~~~l~~-~~~~~~l~~~~~l~G~~~g~~~~~~~~~~se~f~~~~~g~~  264 (366)
                      |..+.....+...++...+. .......+.+.+....+.+...+.....+++....+.+...
T Consensus       343 ~~~~~~~~~~~~~~g~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~s~~~~g~~k~~~  404 (495)
T KOG2533|consen  343 RLLFIVFLCLYAIIGAISLLAAAVLPGAYGAFLIGPYGLIATAIIALSWTSANLAGNTKALT  404 (495)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhhccchHHhHHHHhcchhhHHHHHHHHhhccccccchHHhHH
Confidence            22333444555555644443 32234444444444445555556666666666655543333

>PF05977 MFS_3: Transmembrane secretion effector; InterPro: IPR010290 This family consists of the enterobactin exporter EntS proteins and putative permeases all belonging to the major facilitator superfamily

Probab=99.10  E-value=3.1e-09  Score=108.31  Aligned_cols=155  Identities=14%  Similarity=0.145  Sum_probs=118.1

Q ss_pred             HHhhhhHHHHHHHHHHHhhhhHHHHHhcHHHHHHHhCCChhHH--HHHHHHHHHhhhhhhhhhhhhhhhhhccCchhHHH
Q 017795          131 QALMKADFLLLFFSLVLASGSGLTVIDNLGQICQSLGYADTSI--YVSMISIWNFLGRVGGGYFSEAIVRKFAYPRPVAM  208 (366)
Q Consensus       131 ~~l~~~~~~ll~~~~~~~~~~~~~~~~~l~~i~~~~g~~~~~~--~~sl~~i~~~~g~~~~G~lsD~~grr~~~~R~~~~  208 (366)
                      ..++++.|..++++.+....+.......++.++.++.-++...  ......+-.++..+++|.+.||+.||+.+      
T Consensus         5 aplr~~~Fr~lw~a~~iS~lG~~~~~va~~wlv~~lt~S~~~valv~~a~~LP~~Llsl~aG~laDr~drrril------   78 (524)
T PF05977_consen    5 APLRNRNFRRLWIAQLISNLGDWMQTVALAWLVTQLTGSPLMVALVQAASTLPILLLSLFAGALADRFDRRRIL------   78 (524)
T ss_pred             ccccCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHhhcccchHHH------
Confidence            3468888998988888887777777666777776665444333  33444455567888999999999988765      


Q ss_pred             HHHHHHHHHHHHHH---H---hcchhHHHHHHHHHHHHhhhhhhhHHHHHHHhhCCCchhhHHHHHHhHhhhhHHHhhhh
Q 017795          209 AVAQVVMAFALLYY---A---IGWPGEIYVTTVLVGLSYGAHWAIVPAAASELFGLKSFGALYNFLTLASPAGSLIFSGV  282 (366)
Q Consensus       209 ~~~~~~~~~~~~l~---~---~~~~~~l~~~~~l~G~~~g~~~~~~~~~~se~f~~~~~g~~~g~~~~~~~~G~~i~gp~  282 (366)
                      ..+.++.++..+++   .   ..+++.+++..++.|++.....+...++++|+.+.++...+.++.++..++...+ ||.
T Consensus        79 i~~~~~~~~~~~~L~~l~~~~~~~~~~Ll~~~fl~g~~~a~~~PA~~A~ip~lV~~~~L~~A~al~s~~~niar~i-GPa  157 (524)
T PF05977_consen   79 ILSQLLRALVALLLAVLAFFGLLSPWLLLILTFLLGIGSAFFNPAWQAIIPELVPKEDLPAANALNSISFNIARII-GPA  157 (524)
T ss_pred             HHHHHHHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHhhHHHHHHHHHHHHHHHHhc-cch
Confidence            44544443332221   1   2345677888899999998888999999999999999999999999999999996 999


Q ss_pred             HHHHHhhhhh
Q 017795          283 IASGIYDYYA  292 (366)
Q Consensus       283 i~G~l~d~~~  292 (366)
                      ++|.++...|
T Consensus       158 lgG~Lva~~G  167 (524)
T PF05977_consen  158 LGGILVAFFG  167 (524)
T ss_pred             HHHHHHHHHH
Confidence            9999998887

EntS exports the siderophore enterobactin out of the cell. The genetic locus entS was changed from ybdA so as to reflect its relevant biological function [].

>PRK06814 acylglycerophosphoethanolamine acyltransferase; Provisional

Probab=99.09  E-value=4.1e-09  Score=117.08  Aligned_cols=156  Identities=13%  Similarity=0.065  Sum_probs=116.1

Q ss_pred             HHHHhhhhHHHHHHHHHHHhhhhHHHHHhcHHHHHHH-hCCChhHH--HHHHHHHHHhhhhhhhhhhhhhhhhhccCchh
Q 017795          129 LPQALMKADFLLLFFSLVLASGSGLTVIDNLGQICQS-LGYADTSI--YVSMISIWNFLGRVGGGYFSEAIVRKFAYPRP  205 (366)
Q Consensus       129 ~~~~l~~~~~~ll~~~~~~~~~~~~~~~~~l~~i~~~-~g~~~~~~--~~sl~~i~~~~g~~~~G~lsD~~grr~~~~R~  205 (366)
                      ++.+.+++.+|.+.+.+++..+....+..++|.+.++ +|.+....  +.+.+.++..+|.++.|+++|+..+++..   
T Consensus       218 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~g~~~~~~g~~~~~~~~g~~ig~~~~g~l~~~~~~~~~~---  294 (1140)
T PRK06814        218 LKYAKADKRIWLAILGISWFWLVGAVVLSQLPLLAKETLGGDENVATLFLAVFSVGVAVGSFLASKLSEGRITLLYV---  294 (1140)
T ss_pred             HHHHhcCchHHHHHHHHHHHHHHHHHHHHHhHHHHHHHcCCchHHHHHHHHHHHHHHHHHHHHHHHHhCCceeeeee---
Confidence            4556677888888877777766666677788998876 68876654  77888899999999999999877665433   


Q ss_pred             HHHHHHHHHHHHHHHHHHh---------------------cchhHHHHHHHHHHHHhhhhhhhHHHHHHHhhCCCchhhH
Q 017795          206 VAMAVAQVVMAFALLYYAI---------------------GWPGEIYVTTVLVGLSYGAHWAIVPAAASELFGLKSFGAL  264 (366)
Q Consensus       206 ~~~~~~~~~~~~~~~l~~~---------------------~~~~~l~~~~~l~G~~~g~~~~~~~~~~se~f~~~~~g~~  264 (366)
                         ..+.++.+++.+.+..                     .+...++++.+++|++.+...+...+++.+.++.+.+|++
T Consensus       295 ---~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~~~G~v  371 (1140)
T PRK06814        295 ---PIGALLMGLFGLDLAFASSSVPAEPAQLKSILVFLSKRHGWRILIDLFGLAAAGGLYIVPLFAALQAWANPAHRARV  371 (1140)
T ss_pred             ---hHHHHHHHHHHHHHHhcccccccccccccchhhhhcccccHHHHHHHHHHHHHHHHhHHHHHHHHHhhCCcccceee
Confidence               1222222222111111                     3344556777888999888888889999999999999999


Q ss_pred             HHHHHhHhhhhHHHhhhhHHHHHhhhh
Q 017795          265 YNFLTLASPAGSLIFSGVIASGIYDYY  291 (366)
Q Consensus       265 ~g~~~~~~~~G~~i~gp~i~G~l~d~~  291 (366)
                      +|+.++...+|..+ ++.++|.+++..
T Consensus       372 ~g~~~~~~~~~~~i-g~~~~g~l~~~~  397 (1140)
T PRK06814        372 IAANNVLNAAFMVA-GTIILALLQALG  397 (1140)
T ss_pred             eHHHHHHHHHHHHH-HHHHHHHHHHhc
Confidence            99999999999996 899999988644

>PRK10133 L-fucose transporter; Provisional

Probab=99.09  E-value=5.4e-09  Score=104.46  Aligned_cols=155  Identities=12%  Similarity=0.075  Sum_probs=109.7

Q ss_pred             HHHHhhhhHHHHHHHHHHHhhhhHHHHHhcHHHHH-H-HhCCChhHH--HHHHHHHHHhhhhhhhhhhhhhhhhhccCch
Q 017795          129 LPQALMKADFLLLFFSLVLASGSGLTVIDNLGQIC-Q-SLGYADTSI--YVSMISIWNFLGRVGGGYFSEAIVRKFAYPR  204 (366)
Q Consensus       129 ~~~~l~~~~~~ll~~~~~~~~~~~~~~~~~l~~i~-~-~~g~~~~~~--~~sl~~i~~~~g~~~~G~lsD~~grr~~~~R  204 (366)
                      .++.++++.+|...+..++..+.......+++.+. + .+|++....  ....+.++.++|++++|+++||+++|+..  
T Consensus       251 ~~~ll~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~g~s~~~ag~~~~~~~~~~~vG~~~~g~l~~r~g~~~~l--  328 (438)
T PRK10133        251 LSRLARIRHWRWAVLAQFCYVGAQTACWSYLIRYAVEEIPGMTAGFAANYLTGTMVCFFIGRFTGTWLISRFAPHKVL--  328 (438)
T ss_pred             HHHHHhCchHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHH--
Confidence            45677889888776666666655555566777664 4 468888765  77888889999999999999999987654  


Q ss_pred             hHHHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHhhhhhhhHHHHHHHhhCCCchhhHHHHHHhHhhhhHHHhhhhHH
Q 017795          205 PVAMAVAQVVMAFALLYYAIGWPGEIYVTTVLVGLSYGAHWAIVPAAASELFGLKSFGALYNFLTLASPAGSLIFSGVIA  284 (366)
Q Consensus       205 ~~~~~~~~~~~~~~~~l~~~~~~~~l~~~~~l~G~~~g~~~~~~~~~~se~f~~~~~g~~~g~~~~~~~~G~~i~gp~i~  284 (366)
                          ..+.++.++++++.........+....+.|+|.+..++...+...+.++. +.+++.++..+. .+|+.+ +|.+.
T Consensus       329 ----~~~~~~~~~~~~~~~~~~~~~~~~~~~l~glg~~~i~P~~~s~a~~~~~~-~~~~as~l~~~~-~~g~~~-~~~i~  401 (438)
T PRK10133        329 ----AAYALIAMALCLISAFAGGHVGLIALTLCSAFMSIQYPTIFSLGIKNLGQ-DTKYGSSFIVMT-IIGGGI-VTPVM  401 (438)
T ss_pred             ----HHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHHHHHHHHHcccch-hhccchhHHhHH-hccchH-HHHHH
Confidence                33333333333333222112334566788999999999999998888865 466777777643 467775 78999


Q ss_pred             HHHhhhhh
Q 017795          285 SGIYDYYA  292 (366)
Q Consensus       285 G~l~d~~~  292 (366)
                      |++.|..+
T Consensus       402 G~l~~~~g  409 (438)
T PRK10133        402 GFVSDAAG  409 (438)
T ss_pred             HHHHHhcc
Confidence            99998765

>COG2223 NarK Nitrate/nitrite transporter [Inorganic ion transport and metabolism]

Probab=99.08  E-value=1.6e-09  Score=104.81  Aligned_cols=174  Identities=17%  Similarity=0.174  Sum_probs=131.5

Q ss_pred             HHHHHHHHHHHhhhhHHHHHhcHHHHHHHhCCChhHH--HHHHHHHHHhhhhhhhhhhhhhhhhhccCchhHHHHHHHHH
Q 017795          137 DFLLLFFSLVLASGSGLTVIDNLGQICQSLGYADTSI--YVSMISIWNFLGRVGGGYFSEAIVRKFAYPRPVAMAVAQVV  214 (366)
Q Consensus       137 ~~~ll~~~~~~~~~~~~~~~~~l~~i~~~~g~~~~~~--~~sl~~i~~~~g~~~~G~lsD~~grr~~~~R~~~~~~~~~~  214 (366)
                      ..|+-++++..+....+......+++.+++|+|..+.  +++++.+.+.+.|+..|++.||+|-|+..      ...+++
T Consensus        15 ~L~~S~~af~v~F~VW~l~s~l~~~i~~~~~LS~~q~~ll~aiPil~GallRl~~g~l~drfGgR~~~------~~s~~l   88 (417)
T COG2223          15 NLWLSTLAFDVGFMVWTLFSPLGVFIKSDFGLSEGQKGLLVAIPILVGALLRLPYGFLTDRFGGRKWT------ILSMLL   88 (417)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhhhccccCCCHHHHHHHHHHHHHHhHHHHHHHHhhhcccCchHHH------HHHHHH
Confidence            4565666666666666666666677778999998887  89999999999999999999999987665      666666


Q ss_pred             HHHHHHHHH--hcch--hHHHHHHHHHHHHhhhhhhhHHHHHHHhhCCCchhhHHHHHHhHhhhhHHHhhhhHHHHHhhh
Q 017795          215 MAFALLYYA--IGWP--GEIYVTTVLVGLSYGAHWAIVPAAASELFGLKSFGALYNFLTLASPAGSLIFSGVIASGIYDY  290 (366)
Q Consensus       215 ~~~~~~l~~--~~~~--~~l~~~~~l~G~~~g~~~~~~~~~~se~f~~~~~g~~~g~~~~~~~~G~~i~gp~i~G~l~d~  290 (366)
                      +.+..+.++  ..++  +.++++.++.|++ |+.++...+.++..||+++.|.+.|+.. .+++|..+ ...++..+...
T Consensus        89 ~~IP~~~~~~a~~~~~~~~ll~~gll~G~~-GasFav~m~~~s~~fP~~~qG~AlGI~g-~GN~G~av-~q~~~P~v~~~  165 (417)
T COG2223          89 LLIPCLGLAFAVTYPSTWQLLVIGLLLGLA-GASFAVGMPNASFFFPKEKQGLALGIAG-AGNLGVAV-AQLVAPLVAVA  165 (417)
T ss_pred             HHHHHHHHHHHccCCchHHHHHHHHHHhcc-cceehcccccccccCChhhhhHHHHHhc-cccccHHH-HHHHHHHHHHH
Confidence            666655544  2222  3788888888887 5568888899999999999999999998 88888886 66666666655


Q ss_pred             hhhhhhhhhhhccCCCCCcccCCCCCCcccCCcchHHHHHHHHHHHHHHHHHHHHHHh
Q 017795          291 YAEKQAGLLWKYNGNMLPVSFRDQETPTCLGSICYSITCGIMAGLCIIAMVMSLIVVH  348 (366)
Q Consensus       291 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~g~~~~~~~f~i~~~~~~~~~~~~~~~~~  348 (366)
                      .+..                             .|+.+..+.....++.+++.++...
T Consensus       166 ~g~~-----------------------------~w~~~~~i~~~~l~v~~v~~~~~~~  194 (417)
T COG2223         166 FGFL-----------------------------AWRNVAGIYVVALAIAAVLAWLGMN  194 (417)
T ss_pred             HhhH-----------------------------HHHHHHHHHHHHHHHHHHHHHHHhC
Confidence            5410                             1888888888777777766665543

>PRK11902 ampG muropeptide transporter; Reviewed

Probab=99.08  E-value=1.8e-08  Score=99.26  Aligned_cols=176  Identities=13%  Similarity=0.147  Sum_probs=104.8

Q ss_pred             CHHHHhhhhHHHHHHHHHHHhhhhHHHH-HhcHHHHHHHhCCChhHH--HHHHHH-HHHhhhhhhhhhhhhhhhhhccCc
Q 017795          128 TLPQALMKADFLLLFFSLVLASGSGLTV-IDNLGQICQSLGYADTSI--YVSMIS-IWNFLGRVGGGYFSEAIVRKFAYP  203 (366)
Q Consensus       128 ~~~~~l~~~~~~ll~~~~~~~~~~~~~~-~~~l~~i~~~~g~~~~~~--~~sl~~-i~~~~g~~~~G~lsD~~grr~~~~  203 (366)
                      ++++.++++.+|.+++..++........ ....+.+.+++|++....  ..+..+ ++..+|.+++|+++||+++|+.. 
T Consensus       201 ~~~~l~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~l~~~~G~~~~~~g~~~~~~~~~~~i~g~~~~g~l~~r~g~~~~l-  279 (402)
T PRK11902        201 PLRDFFSRRGAWALLLLIVLYKLGDAFAGSLSTTFLIRGAGFSAGEVGIVNKTLGLAATIVGALAGGTLMVRLGLYRSL-  279 (402)
T ss_pred             HHHHHHhCcCHHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCCHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHhHHHHH-
Confidence            3566778888887665544443322222 233344556689987765  333333 45788999999999999986543 


Q ss_pred             hhHHHHHHHHHHHHHHHHHHh--cchhHHHHHHH----HHHHHhhhhhhhHHHHHHHhhCCCchhhHHHHHHhHhhhhHH
Q 017795          204 RPVAMAVAQVVMAFALLYYAI--GWPGEIYVTTV----LVGLSYGAHWAIVPAAASELFGLKSFGALYNFLTLASPAGSL  277 (366)
Q Consensus       204 R~~~~~~~~~~~~~~~~l~~~--~~~~~l~~~~~----l~G~~~g~~~~~~~~~~se~f~~~~~g~~~g~~~~~~~~G~~  277 (366)
                        ........+..+.+.+++.  .+...+++..+    +.|++.+...+....++.+.++.+.    +++.+....+|..
T Consensus       280 --~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~l~~~  353 (402)
T PRK11902        280 --MLFGVLQAVSNLGYWVLAVTPKHLWTMALAIGIENLCGGMGTAAFVALLMALCNRSFSATQ----YALLSALASVGRV  353 (402)
T ss_pred             --HHHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCcHHH----HHHHHHHHHHHHH
Confidence              1111122222222222232  22233333333    3455555556666666666666544    4555555667777


Q ss_pred             HhhhhHHHHHhhhhhhhhhhhhhhccCCCCCcccCCCCCCcccCCcchHHHHHHHHHHHHHHHHHH
Q 017795          278 IFSGVIASGIYDYYAEKQAGLLWKYNGNMLPVSFRDQETPTCLGSICYSITCGIMAGLCIIAMVMS  343 (366)
Q Consensus       278 i~gp~i~G~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~g~~~~~~~f~i~~~~~~~~~~~~  343 (366)
                      + ++.++|.++|..|                                |+..|.+.+++++++.++.
T Consensus       354 ~-~~~~~G~l~~~~G--------------------------------~~~~f~~~~~~~~~~~~~~  386 (402)
T PRK11902        354 Y-VGPTSGYLVEAYG--------------------------------WPGFYLMTVVIALPGLALL  386 (402)
T ss_pred             H-HHHHHHHHHHHhC--------------------------------hHHHHHHHHHHHHHHHHHH
Confidence            5 5568999999988                                9999998887777765544

>KOG0255 consensus Synaptic vesicle transporter SVOP and related transporters (major facilitator superfamily) [General function prediction only]

Probab=99.08  E-value=9.5e-10  Score=112.06  Aligned_cols=127  Identities=14%  Similarity=0.012  Sum_probs=108.2

Q ss_pred             HHHHHHHHHhhhhhhhhhhhhhhhhhccCchhHHHHHHHHHHHHHHHHHH-hcchhHHHHHHHHHHHHhhhhhhhHHHHH
Q 017795          174 YVSMISIWNFLGRVGGGYFSEAIVRKFAYPRPVAMAVAQVVMAFALLYYA-IGWPGEIYVTTVLVGLSYGAHWAIVPAAA  252 (366)
Q Consensus       174 ~~sl~~i~~~~g~~~~G~lsD~~grr~~~~R~~~~~~~~~~~~~~~~l~~-~~~~~~l~~~~~l~G~~~g~~~~~~~~~~  252 (366)
                      ..+++.++..+|.+++|++||++|||+.+      ..++++..++.+..+ ..+...+++.+++.|++.++..+..+.++
T Consensus       123 ~~s~~~~G~~vG~~i~g~lsD~~GRk~~~------~~~~~~~~i~~~~~a~a~~~~~~~~~Rfl~G~~~~~~~~~~~~~~  196 (521)
T KOG0255|consen  123 GQSLFFLGVLVGSLIFGPLSDRFGRKPVL------LVSLLLFIIFGILTAFAPNYWMFLIFRFLSGFFGSGPLTVGFGLV  196 (521)
T ss_pred             HHHHHHHHHHHHHhhheehHhhcccHHHH------HHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHhhccchhHHhHhhh
Confidence            78888899999999999999999998776      667766666666655 56777889999999999999999999999


Q ss_pred             HHhhCCCchhhHHHHHHhHhhhhHHHhhhhHHHHHhhhhhhhhhhhhhhccCCCCCcccCCCCCCcccCCcchHHHHHHH
Q 017795          253 SELFGLKSFGALYNFLTLASPAGSLIFSGVIASGIYDYYAEKQAGLLWKYNGNMLPVSFRDQETPTCLGSICYSITCGIM  332 (366)
Q Consensus       253 se~f~~~~~g~~~g~~~~~~~~G~~i~gp~i~G~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~g~~~~~~~f~i~  332 (366)
                      +|++++++|+.+..+ ......++.+ +|.+++++..  +                                ||+.+++.
T Consensus       197 ~E~~~~~~R~~~~~~-~~~~~~~~~~-~~~~~a~~~~--~--------------------------------Wr~~~~~~  240 (521)
T KOG0255|consen  197 AEIVSPKQRGLALTL-GGFFFVGGLM-LPAGAAYITR--D--------------------------------WRWLFWII  240 (521)
T ss_pred             eeecCcchhhHHHHH-HHHHHHHHHH-HHHHHHHHHh--h--------------------------------HHHHHHHH
Confidence            999999999999999 6776777775 7888888776  3                                99999999


Q ss_pred             HHHHHHHHHH
Q 017795          333 AGLCIIAMVM  342 (366)
Q Consensus       333 ~~~~~~~~~~  342 (366)
                      ...+++..+.
T Consensus       241 ~~~~~~~~~~  250 (521)
T KOG0255|consen  241 SIPSGLFLLL  250 (521)
T ss_pred             HHHHHHHHHH
Confidence            8888776655

>PRK09848 glucuronide transporter; Provisional

Probab=99.08  E-value=2.8e-09  Score=106.51  Aligned_cols=157  Identities=12%  Similarity=0.074  Sum_probs=110.4

Q ss_pred             HHHHhhhhHHHHHHHHHHHhhhhHHHHHhcHHHHHHH-hCCChhHH-HHHHH-HHHHhhhhhhhhhhhhhhhhhccCchh
Q 017795          129 LPQALMKADFLLLFFSLVLASGSGLTVIDNLGQICQS-LGYADTSI-YVSMI-SIWNFLGRVGGGYFSEAIVRKFAYPRP  205 (366)
Q Consensus       129 ~~~~l~~~~~~ll~~~~~~~~~~~~~~~~~l~~i~~~-~g~~~~~~-~~sl~-~i~~~~g~~~~G~lsD~~grr~~~~R~  205 (366)
                      +++.++++.++.+.+..++............|++.++ +|.+.... +.... .++.+++.+++++++||+++|+.+   
T Consensus       221 ~~~l~~n~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~l~~~l~~r~g~~~~~---  297 (448)
T PRK09848        221 LQTLKRNRPLFMLCIGALCVLISTFAVSASSLFYVRYVLNDTGLFTVLVLVQNLVGTVASAPLVPGMVARIGKKNTF---  297 (448)
T ss_pred             HHHHhCCchHHHHHHHHHHHHHHHHHHhhhheeeEeeecCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcHHHH---
Confidence            4567889999888777777666555555566666654 56554433 32232 455677889999999999887654   


Q ss_pred             HHHHHHHHHHHHHHHHHHhc---chhHHHHHHHHHHHHhhhhhhhHHHHHHHhhCC-------CchhhHHHHHHhHhhhh
Q 017795          206 VAMAVAQVVMAFALLYYAIG---WPGEIYVTTVLVGLSYGAHWAIVPAAASELFGL-------KSFGALYNFLTLASPAG  275 (366)
Q Consensus       206 ~~~~~~~~~~~~~~~l~~~~---~~~~l~~~~~l~G~~~g~~~~~~~~~~se~f~~-------~~~g~~~g~~~~~~~~G  275 (366)
                         .++.++.+++.+++...   +...+++..++.|+|.+...+...++.+|..+.       ++.|..+++.+....+|
T Consensus       298 ---~~g~~~~~i~~~~~~~~~~~~~~~~~~~~~l~g~G~~~~~~~~~al~~~~~~~~~~~~g~r~~G~~~~~~~~~~klg  374 (448)
T PRK09848        298 ---LIGALLGTCGYLLFFWVSVWSLPVALVALAIASIGQGVTMTVMWALEADTVEYGEYLTGVRIEGLTYSLFSFTRKCG  374 (448)
T ss_pred             ---HHHHHHHHHHHHHHHHcCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHhhCccchhHHHHHHHHHHHHH
Confidence               55555655555554322   223445566778889888888888888877643       45699999999999999


Q ss_pred             HHHhhhhHHHHHhhhhh
Q 017795          276 SLIFSGVIASGIYDYYA  292 (366)
Q Consensus       276 ~~i~gp~i~G~l~d~~~  292 (366)
                      ..+ |+.+.|.+.+..|
T Consensus       375 ~ai-g~~i~g~~l~~~G  390 (448)
T PRK09848        375 QAI-GGSIPAFILGLSG  390 (448)
T ss_pred             HHH-HHHHHHHHHHHcC
Confidence            996 9999999987665

>TIGR00885 fucP L-fucose:H+ symporter permease

Probab=99.07  E-value=6.5e-09  Score=103.02  Aligned_cols=156  Identities=10%  Similarity=-0.033  Sum_probs=110.3

Q ss_pred             CHHHHhhhhHHHHHHHHHHHhhhhHHHHHhcHHHHHHHhCC--ChhHH--HHHHHHHHHhhhhhhhhhhhhhhhhhccCc
Q 017795          128 TLPQALMKADFLLLFFSLVLASGSGLTVIDNLGQICQSLGY--ADTSI--YVSMISIWNFLGRVGGGYFSEAIVRKFAYP  203 (366)
Q Consensus       128 ~~~~~l~~~~~~ll~~~~~~~~~~~~~~~~~l~~i~~~~g~--~~~~~--~~sl~~i~~~~g~~~~G~lsD~~grr~~~~  203 (366)
                      ++++.++++.++...++.++..+...+..++++.+.++.+.  +....  +.+.......+||+++|++.||+++|+.. 
T Consensus       224 ~~~~~~~~~~~~~~~l~~f~yvg~e~~~~s~l~~y~~~~~~~~~~~~a~~~~~~~~~~~~vGR~~~~~l~~r~~~~~~l-  302 (410)
T TIGR00885       224 SLSRLARIRHYREGVIAQFFYVGVQIMCWTFIIQYAVRLIPGMTAGFAANYNIGAMVIFFISRFIGTWLISYLAAHKVL-  302 (410)
T ss_pred             hHHHHHhChhHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHH-
Confidence            34577888989887777777766666677788888876543  33222  56666677889999999999999776533 


Q ss_pred             hhHHHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHhhhhhhhHHHHHHHhhCCCchhhHHHHHHhHhhhhHHHhhhhH
Q 017795          204 RPVAMAVAQVVMAFALLYYAIGWPGEIYVTTVLVGLSYGAHWAIVPAAASELFGLKSFGALYNFLTLASPAGSLIFSGVI  283 (366)
Q Consensus       204 R~~~~~~~~~~~~~~~~l~~~~~~~~l~~~~~l~G~~~g~~~~~~~~~~se~f~~~~~g~~~g~~~~~~~~G~~i~gp~i  283 (366)
                           .+..++.++.+++..........++.++.|++.+..|+...+...+..+++......++....  +|+.+ .|.+
T Consensus       303 -----~i~~~~~~~~~ll~~~~~~~~~~~~l~~~glf~s~~fp~i~sl~~~~~g~~~~~~s~~l~~~~--~Gga~-~p~l  374 (410)
T TIGR00885       303 -----MAYAIIGMALCLGSIFAGGHVGLYCLTLCSAFMSLMFPTIYGIALKGLGQDTKYGAAGLVMAI--IGGGI-VPPL  374 (410)
T ss_pred             -----HHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhHHHHHHHH--hccch-HHHH
Confidence                 444444444444444333334466777888888899999999999999876654444444433  88886 7999


Q ss_pred             HHHHhhhhh
Q 017795          284 ASGIYDYYA  292 (366)
Q Consensus       284 ~G~l~d~~~  292 (366)
                      .|++.|..+
T Consensus       375 ~G~~~d~~~  383 (410)
T TIGR00885       375 QGFIIDMKE  383 (410)
T ss_pred             HHHHHHHhc
Confidence            999999653

This family describes the L-fucose permease in bacteria. L-fucose(6-deoxy-L-galactose) is a monosaccharide found in glycoproteins and cell wall polysaccharides. L-fucose is used in bacteria through an inducible pathway mediated by atleast four enzymes: a permease, isomerase, kinase and an aldolase which are encoded by fucP, fucI, fucK, fucA respectively. The fuc genes belong to a regulon comprising of four linked operons: fucO, fucA, fucPIK and fucR. The positive regulator is encoded by fucR, whose protein responds to fuculose-1-phosphate, which acts as an effector.

>COG2270 Permeases of the major facilitator superfamily [General function prediction only]

Probab=99.07  E-value=2.9e-09  Score=103.16  Aligned_cols=181  Identities=17%  Similarity=0.208  Sum_probs=134.2

Q ss_pred             HHHHhhhhHHHHHHHHHHHhhhhHHHHHhcHHHHHH-HhCCChhHH--HHHHHHHHHhhhhhhhhhhhhhhhhhccCchh
Q 017795          129 LPQALMKADFLLLFFSLVLASGSGLTVIDNLGQICQ-SLGYADTSI--YVSMISIWNFLGRVGGGYFSEAIVRKFAYPRP  205 (366)
Q Consensus       129 ~~~~l~~~~~~ll~~~~~~~~~~~~~~~~~l~~i~~-~~g~~~~~~--~~sl~~i~~~~g~~~~G~lsD~~grr~~~~R~  205 (366)
                      ++++.+.++...+.++.+...=...+.......+.. ++|++..+.  +....++..++|.+++|++.||++.|...   
T Consensus       245 ~k~i~~~~~i~~FLiA~~~~~DGv~til~~~~~fg~~~~gls~~~lll~g~~~~vvA~lg~ii~g~Ld~rfg~k~vl---  321 (438)
T COG2270         245 FKEIRGRKNLVLFLIARFFYIDGVNTILAMGGVFGAADLGLSSTELLLIGIALSVVAALGAIIAGFLDERFGSKPVL---  321 (438)
T ss_pred             HHHHhcccchHHHHHHHHHHHhhHHHHHHHHHHHHHHHcCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCceee---
Confidence            445555555555555554443333344444555665 799998887  66677888999999999999999988655   


Q ss_pred             HHHHHHHHHH-HHHHHHHHhcchhHHHHHHHHHHHHhhhhhhhHHHHHHHhhCCCchhhHHHHHHhHhhhhHHHhhhhHH
Q 017795          206 VAMAVAQVVM-AFALLYYAIGWPGEIYVTTVLVGLSYGAHWAIVPAAASELFGLKSFGALYNFLTLASPAGSLIFSGVIA  284 (366)
Q Consensus       206 ~~~~~~~~~~-~~~~~l~~~~~~~~l~~~~~l~G~~~g~~~~~~~~~~se~f~~~~~g~~~g~~~~~~~~G~~i~gp~i~  284 (366)
                         .++.++. .++...+....+....++..++|++.|+.++..-++.+++.|+++-+..+|+.++.+..++.+ ||.+.
T Consensus       322 ---~~~lvi~~~~~~~~~~~~~~~~f~i~gll~g~s~G~~qA~SRSy~~~lvp~~k~~~fFglyaltgra~S~~-gp~lv  397 (438)
T COG2270         322 ---MIGLVILSIAALYLIFLEGELDFWILGLLVGTSLGGAQASSRSYLARLVPKGKEGRFFGLYALTGRAASFL-GPFLV  397 (438)
T ss_pred             ---hHHHHHHHHHHHHHHHccccHHHHHHHHHHHHhcchHHHHHHHHHHHhCCCccccceeehhhhhhhHHHHH-HHHHH
Confidence               3443333 333333444445667778889999999999999999999999999999999999999999995 99999


Q ss_pred             HHHhhhhhhhhhhhhhhccCCCCCcccCCCCCCcccCCcchHHHHHHHHHHHHHHHHHHHHHH
Q 017795          285 SGIYDYYAEKQAGLLWKYNGNMLPVSFRDQETPTCLGSICYSITCGIMAGLCIIAMVMSLIVV  347 (366)
Q Consensus       285 G~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~g~~~~~~~f~i~~~~~~~~~~~~~~~~  347 (366)
                      +.+.+.++                               +-|..+..+..+.+++.++.+.+.
T Consensus       398 ~v~t~iTg-------------------------------~~r~g~~~i~vll~iGl~~L~~v~  429 (438)
T COG2270         398 AVITQITG-------------------------------SSRAGVLSIIVLLLIGLLLLLRVK  429 (438)
T ss_pred             HHHHHHhc-------------------------------chhhHHHHHHHHHHhhHhhEEeec
Confidence            99999988                               367777777777777666554443

>PRK09669 putative symporter YagG; Provisional

Probab=99.06  E-value=6.4e-09  Score=103.83  Aligned_cols=157  Identities=14%  Similarity=0.093  Sum_probs=103.6

Q ss_pred             HHHHhhhhHHHHHHHHHHHhhhhHHHHHhcHHHHHHHh-CCChhHH-HHHHHHHHHhhhhhhhhhhhhhhhhhccCchhH
Q 017795          129 LPQALMKADFLLLFFSLVLASGSGLTVIDNLGQICQSL-GYADTSI-YVSMISIWNFLGRVGGGYFSEAIVRKFAYPRPV  206 (366)
Q Consensus       129 ~~~~l~~~~~~ll~~~~~~~~~~~~~~~~~l~~i~~~~-g~~~~~~-~~sl~~i~~~~g~~~~G~lsD~~grr~~~~R~~  206 (366)
                      +++.++++.+|.+++..++.............++.+.. +...... +.....+...++.+++++++||+|+|+..    
T Consensus       222 ~~~~~~n~~~~~l~~~~~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~i~~ii~~~~~~~l~~r~gk~~~~----  297 (444)
T PRK09669        222 LKLLLGNSQWRIMFIFNVVLLTAVVTRGGATLYYVNYVLLRPDLATLFLVTGMIAGLFGALLSERLLGKFDRVRAF----  297 (444)
T ss_pred             HHHHhCCchHHHHHHHHHHHHHHHHHHhhhhheeeeeecCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhChHHHH----
Confidence            55677889888877666554443332223233333322 2222222 44444566778889999999999987654    


Q ss_pred             HHHHHHHHHHH-HHHHHH--hcchhHHHHHHHHHHHHhhhhhhhHHHHHHHhh-------CCCchhhHHHHHHhHhhhhH
Q 017795          207 AMAVAQVVMAF-ALLYYA--IGWPGEIYVTTVLVGLSYGAHWAIVPAAASELF-------GLKSFGALYNFLTLASPAGS  276 (366)
Q Consensus       207 ~~~~~~~~~~~-~~~l~~--~~~~~~l~~~~~l~G~~~g~~~~~~~~~~se~f-------~~~~~g~~~g~~~~~~~~G~  276 (366)
                        ..+.++.++ +..++.  ..+...+++..++.|++.++..++.+++++|..       |.+.-|..++..+....+|.
T Consensus       298 --~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~g~~~~~~~~~~~am~ad~~d~~e~~~G~r~~g~~~s~~~~~~klg~  375 (444)
T PRK09669        298 --KWTIVAFVILSALIFFIPPSNVWLIFALNILFNFIQNLTTPLQWSMFSDVVDYEEKRSGRRLDGLVFSTNLFAIKLGL  375 (444)
T ss_pred             --HHHHHHHHHHHHHHHHhCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhcCcCcchHHHHHHHHHHHHHH
Confidence              333333332 222222  233445667778889999999999999999887       44557788899999999999


Q ss_pred             HHhhhhHHHHHhhhhh
Q 017795          277 LIFSGVIASGIYDYYA  292 (366)
Q Consensus       277 ~i~gp~i~G~l~d~~~  292 (366)
                      .+ |+.++|.+.|..|
T Consensus       376 al-g~~i~g~ll~~~G  390 (444)
T PRK09669        376 AI-GGAVVGWILAWVD  390 (444)
T ss_pred             HH-HHHHHHHHHHHcC
Confidence            96 9999999999776

>PRK08633 2-acyl-glycerophospho-ethanolamine acyltransferase; Validated

Probab=99.05  E-value=1.2e-08  Score=113.27  Aligned_cols=154  Identities=15%  Similarity=0.079  Sum_probs=112.7

Q ss_pred             HHHHhhhhHHHHHHHHHHHhhhhHHHHHhcHHHHHH-HhCCChh-HH--HHHHHHHHHhhhhhhhhhhhhhhhhhccCch
Q 017795          129 LPQALMKADFLLLFFSLVLASGSGLTVIDNLGQICQ-SLGYADT-SI--YVSMISIWNFLGRVGGGYFSEAIVRKFAYPR  204 (366)
Q Consensus       129 ~~~~l~~~~~~ll~~~~~~~~~~~~~~~~~l~~i~~-~~g~~~~-~~--~~sl~~i~~~~g~~~~G~lsD~~grr~~~~R  204 (366)
                      ++..++++.+|.+.+..++.......+..++|.+.+ .+|++.. ..  +.++..++.++|.+++|+++||++++...  
T Consensus       225 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~~g~~~~~~~ig~~~g~~~~g~l~~r~~~~~~~--  302 (1146)
T PRK08633        225 LKLLRSDRVLWLAIIGLSYFWFISQLAQANFPAYAKEVLGLDNTFQVQYLLAASAIGIGIGSLLAGRLSGRHIELGLV--  302 (1146)
T ss_pred             HHHHhcCcHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhCCCcHHHHHHHHHHHHHHHHHHHHHHHHHhCCceEccch--
Confidence            445667777787766666655555556667777765 4788766 44  67777888889999999999999876544  


Q ss_pred             hHHHHHHHHHHHHHHHHHH-hcchhHHHHHHHHHHHHhhhhhhhHHHHHHHhhCCCchhhHHHHHHhHhhhhHHHhhhhH
Q 017795          205 PVAMAVAQVVMAFALLYYA-IGWPGEIYVTTVLVGLSYGAHWAIVPAAASELFGLKSFGALYNFLTLASPAGSLIFSGVI  283 (366)
Q Consensus       205 ~~~~~~~~~~~~~~~~l~~-~~~~~~l~~~~~l~G~~~g~~~~~~~~~~se~f~~~~~g~~~g~~~~~~~~G~~i~gp~i  283 (366)
                          .++.++++++.+++. ..+...++++.+++|++.+...+...+++.+.++.+.+|+++++.++...+|..+ ++.+
T Consensus       303 ----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~~rg~~~~~~~~~~~lg~~~-~~~~  377 (1146)
T PRK08633        303 ----PLGALGLALSLFLLPTAPSLASVLVLFFLFGFSAGLFIVPLNALIQFRAPEKELGKVLAANNFLQNVGMLL-FLAL  377 (1146)
T ss_pred             ----hHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHhhHHHHHHHhhcCCccchhhhhHHHHHHHHHHHHH-HHHH
Confidence                444555555554444 3344456677788899988888888889999999999999999999999999875 6766


Q ss_pred             HHHHhh
Q 017795          284 ASGIYD  289 (366)
Q Consensus       284 ~G~l~d  289 (366)
                      ++.+..
T Consensus       378 ~~~l~~  383 (1146)
T PRK08633        378 TTLFSG  383 (1146)
T ss_pred             HHHHHH
Confidence            665543

>KOG0569 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism]

Probab=99.04  E-value=1.8e-08  Score=100.75  Aligned_cols=190  Identities=16%  Similarity=0.103  Sum_probs=122.8

Q ss_pred             CCCCHHHHhhhhHH----HHHHHHHHHhhhhHHH-HHhcHHHHHHHhCCChhHH--HHHHHHHHHhhhhhhhhhhhhhhh
Q 017795          125 EDFTLPQALMKADF----LLLFFSLVLASGSGLT-VIDNLGQICQSLGYADTSI--YVSMISIWNFLGRVGGGYFSEAIV  197 (366)
Q Consensus       125 ~~~~~~~~l~~~~~----~ll~~~~~~~~~~~~~-~~~~l~~i~~~~g~~~~~~--~~sl~~i~~~~g~~~~G~lsD~~g  197 (366)
                      ++.+++|.++++..    ++.+...++....+.. ...+--.+.++-|++...+  .....++.+.+..+.+.++.||+|
T Consensus       254 ~~~sl~~~~~~~~lR~~~~i~~~v~~~qq~sGi~ai~~Yst~i~~~aG~~~~~a~~an~~~g~v~~~~t~~~~~lid~~g  333 (485)
T KOG0569|consen  254 KQISLRQLLKNPTLRRPLLIGIVVSFAQQFSGINAIFFYSTSIFKTAGFTPEEAQYANLGIGIVNLLSTLVSPFLIDRLG  333 (485)
T ss_pred             cCCcHHHHhcCcchhHHHHHHHHHHHHHHhcCcceeHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence            55678888876532    2333333444444333 3333445778889987765  677778889999999999999999


Q ss_pred             hhccCchhHHHHHHHHHHHHHHHHHH-------hcchhHH---HHHHHHHHHHhh-hhhhhHHHHHHHhhCCCchhhHHH
Q 017795          198 RKFAYPRPVAMAVAQVVMAFALLYYA-------IGWPGEI---YVTTVLVGLSYG-AHWAIVPAAASELFGLKSFGALYN  266 (366)
Q Consensus       198 rr~~~~R~~~~~~~~~~~~~~~~l~~-------~~~~~~l---~~~~~l~G~~~g-~~~~~~~~~~se~f~~~~~g~~~g  266 (366)
                      ||+..      ..+..++++..+++.       ...++..   +++.+++.++++ +..++.+-+.+|+|+++.|+.+..
T Consensus       334 RRpLl------l~~~~~~~~~~~~~~~~~~l~~~~~~~~~y~~i~~~~~~~~~f~~G~gpi~~fi~aELf~~~~R~aa~s  407 (485)
T KOG0569|consen  334 RRPLL------LISLSLMAVALLLMSIALFLSNSFGSWLSYLCIAAIFLFIISFAIGPGPIPWFIGAELFPQSARSAAQS  407 (485)
T ss_pred             CcHHH------HHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhhhcCCCchhHHHHHHhCCccchHHHHH
Confidence            98655      444444443333322       1111222   233333443333 224667779999999999999999


Q ss_pred             HHHhHhhhhHHHhhhhHHHHHhhhhhhhhhhhhhhccCCCCCcccCCCCCCcccCCcchHHHHHHHHHHHHHHHHHHHHH
Q 017795          267 FLTLASPAGSLIFSGVIASGIYDYYAEKQAGLLWKYNGNMLPVSFRDQETPTCLGSICYSITCGIMAGLCIIAMVMSLIV  346 (366)
Q Consensus       267 ~~~~~~~~G~~i~gp~i~G~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~g~~~~~~~f~i~~~~~~~~~~~~~~~  346 (366)
                      +.....-+..++ -....-.+.+..|                                 ...|.+..+.+.+..+..+..
T Consensus       408 ~~~~~~w~~~fi-v~~~fp~l~~~~g---------------------------------~~~filF~i~~~~~~i~~~~~  453 (485)
T KOG0569|consen  408 VATAVNWLSNFI-VGFAFPPLQNVIG---------------------------------PYVFILFVIPLAIFLIYLYRY  453 (485)
T ss_pred             HHHHHHHHHHHH-HHHHHHHHHHHhc---------------------------------chhhHHHHHHHHHHHHHHHHh
Confidence            999988888886 3455555555555                                 146777777788878788788


Q ss_pred             HhhcHHHH
Q 017795          347 VHRTKSVY  354 (366)
Q Consensus       347 ~~~~r~~~  354 (366)
                      .++||.+.
T Consensus       454 lPETkgr~  461 (485)
T KOG0569|consen  454 LPETKGRT  461 (485)
T ss_pred             CcccCCCC
Confidence            88888533

>TIGR00710 efflux_Bcr_CflA drug resistance transporter, Bcr/CflA subfamily

Probab=99.04  E-value=7.5e-09  Score=100.26  Aligned_cols=152  Identities=16%  Similarity=0.071  Sum_probs=101.7

Q ss_pred             HHHHhhhhHHHHHHHHHHHhhhhHHHHHhcHHHHHH-HhCCChhHH--HHHHHHHHHhhhhhhhhhhhhhhhhhccCchh
Q 017795          129 LPQALMKADFLLLFFSLVLASGSGLTVIDNLGQICQ-SLGYADTSI--YVSMISIWNFLGRVGGGYFSEAIVRKFAYPRP  205 (366)
Q Consensus       129 ~~~~l~~~~~~ll~~~~~~~~~~~~~~~~~l~~i~~-~~g~~~~~~--~~sl~~i~~~~g~~~~G~lsD~~grr~~~~R~  205 (366)
                      +++.++++.+|...+...+.......+..+.|.+.+ ++|+++...  ..+...++..+++++.|+++||+++|+..   
T Consensus       199 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~g~l~~~~~~~~~~---  275 (385)
T TIGR00710       199 FLLLLKSKMFWGYALIYGASFGGFFAFFSGAPFVYIDIMGVSPSVFGLLFALNIIAMIFGGFLNGRFIKKWGAKSLL---  275 (385)
T ss_pred             HHHHHcCchhHHHHHHHHHHHHHHHHHHHcChHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHH---
Confidence            345677888887776665555555566667777765 688887665  66677888899999999999999887544   


Q ss_pred             HHHHHHHHHHHHHHHHHHh----c-c-hhHHHHHHHHHHHHhhhhhhhHHHHHHHhhCCCchhhHHHHHHhHhhhhHHHh
Q 017795          206 VAMAVAQVVMAFALLYYAI----G-W-PGEIYVTTVLVGLSYGAHWAIVPAAASELFGLKSFGALYNFLTLASPAGSLIF  279 (366)
Q Consensus       206 ~~~~~~~~~~~~~~~l~~~----~-~-~~~l~~~~~l~G~~~g~~~~~~~~~~se~f~~~~~g~~~g~~~~~~~~G~~i~  279 (366)
                         ..+.+++.++.+++..    . . ...++...++.|++.+...+.......|.++ +.++++.++.+.....++.+.
T Consensus       276 ---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~-~~~g~~~~~~~~~~~~~g~i~  351 (385)
T TIGR00710       276 ---RMGLILFAVSAVLLEITAILGLGSWAMIIGPMMFVGIGNSMISSIAMAYALEDFP-HVAGTASALFGTLRLVLGAIV  351 (385)
T ss_pred             ---HHHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHHHHHHHhccCc-ccchHHHHHHHHHHHHHHHHH
Confidence               3333333333333221    1 1 1233445567788888878888888888876 678999999888776655543


Q ss_pred             hhhHHHHHh
Q 017795          280 SGVIASGIY  288 (366)
Q Consensus       280 gp~i~G~l~  288 (366)
                      +| +.|.+.
T Consensus       352 ~~-~~~~~~  359 (385)
T TIGR00710       352 GY-LVSLIH  359 (385)
T ss_pred             HH-HHHhcc
Confidence            44 455443

This subfamily of drug efflux proteins, a part of the major faciliator family, is predicted to have 12 membrane-spanning regions. Members with known activity include Bcr (bicyclomycin resistance protein) in E. coli, Flor (chloramphenicol and florfenicol resistance) in Salmonella typhimurium DT104, and CmlA (chloramphenicol resistance) in Pseudomonas sp. plasmid R1033.

>TIGR00711 efflux_EmrB drug resistance transporter, EmrB/QacA subfamily

Probab=99.03  E-value=6.3e-09  Score=104.35  Aligned_cols=155  Identities=12%  Similarity=0.091  Sum_probs=119.0

Q ss_pred             HHHhhhhHHHHHHHHHHHhhhhHHHHHhcHHHHHHH-hCCChhHH--HHHHHHHHHhhhhhhhhhhhhhhhhhccCchhH
Q 017795          130 PQALMKADFLLLFFSLVLASGSGLTVIDNLGQICQS-LGYADTSI--YVSMISIWNFLGRVGGGYFSEAIVRKFAYPRPV  206 (366)
Q Consensus       130 ~~~l~~~~~~ll~~~~~~~~~~~~~~~~~l~~i~~~-~g~~~~~~--~~sl~~i~~~~g~~~~G~lsD~~grr~~~~R~~  206 (366)
                      .+.++++.++...+..++..........++|.+.++ +|++..+.  ......++..+++++.|+++||++||+..    
T Consensus       249 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~~r~~~~~~~----  324 (485)
T TIGR00711       249 LRLFKYRNFTIGCVYMSLLGLGLYGSFYLLPLYLQQVLGYTALQAGLHILPVGLAPMLSSPIAGRMGDKIDPRKLV----  324 (485)
T ss_pred             HHHHcCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCcHHHH----
Confidence            457788888887777666666666667788988876 78887665  66667788899999999999999886543    


Q ss_pred             HHHHHHHHHHHHHHHHH--h-c--chhHHHHHHHHHHHHhhhhhhhHHHHHHHhhCCCchhhHHHHHHhHhhhhHHHhhh
Q 017795          207 AMAVAQVVMAFALLYYA--I-G--WPGEIYVTTVLVGLSYGAHWAIVPAAASELFGLKSFGALYNFLTLASPAGSLIFSG  281 (366)
Q Consensus       207 ~~~~~~~~~~~~~~l~~--~-~--~~~~l~~~~~l~G~~~g~~~~~~~~~~se~f~~~~~g~~~g~~~~~~~~G~~i~gp  281 (366)
                        .++..+++++.+++.  . .  +...+++..++.|++.+..++.....+.+.+|++++|++.++.+....+|+.+ |+
T Consensus       325 --~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~g~~i-g~  401 (485)
T TIGR00711       325 --TIGLILYAVGFYWRAFTFTPDTPFLAIALPQFIRGFGMGCFFMPLTTIALSGLPPHKIARGSSLSNFTRQLGGSI-GT  401 (485)
T ss_pred             --HHHHHHHHHHHHHHhccCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHhHHHHHHHHHHHHHHHH-HH
Confidence              556666666655544  1 1  22345566778899888877766777778889999999999999999999996 99


Q ss_pred             hHHHHHhhhh
Q 017795          282 VIASGIYDYY  291 (366)
Q Consensus       282 ~i~G~l~d~~  291 (366)
                      .+.|.+++..
T Consensus       402 ~i~g~~~~~~  411 (485)
T TIGR00711       402 ALITTILTNR  411 (485)
T ss_pred             HHHHHHHHHH
Confidence            9999998854

This subfamily of drug efflux proteins, a part of the major faciliator family, is predicted to have 14 potential membrane-spanning regions. Members with known activities include EmrB (multiple drug resistance efflux pump) in E. coli, FarB (antibacterial fatty acid resistance) in Neisseria gonorrhoeae, TcmA (tetracenomycin C resistance) in Streptomyces glaucescens, etc. In most cases, the efflux pump is described as having a second component encoded in the same operon, such as EmrA of E. coli.

>TIGR00883 2A0106 metabolite-proton symporter

Probab=99.01  E-value=1.3e-08  Score=98.29  Aligned_cols=103  Identities=18%  Similarity=0.251  Sum_probs=81.8

Q ss_pred             HHHhhhhhhhhhhhhhhhhhccCchhHHHHHHHHHHHHHHHHHHh-cchh--------HHHHHHHHHHHHhhhhhhhHHH
Q 017795          180 IWNFLGRVGGGYFSEAIVRKFAYPRPVAMAVAQVVMAFALLYYAI-GWPG--------EIYVTTVLVGLSYGAHWAIVPA  250 (366)
Q Consensus       180 i~~~~g~~~~G~lsD~~grr~~~~R~~~~~~~~~~~~~~~~l~~~-~~~~--------~l~~~~~l~G~~~g~~~~~~~~  250 (366)
                      +...++.++.|+++||+|||+.+      ..+.++.+++.++... .+..        .+++.+++.|++.+..++....
T Consensus        46 ~~~~i~~~~~G~l~dr~g~r~~l------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~G~~~~~~~~~~~~  119 (394)
T TIGR00883        46 LARPLGAIVFGHFGDRIGRKKTL------VITLLMMGIGTLLIGLLPSYATIGIWAPILLLLARLIQGFSLGGEWGGAAL  119 (394)
T ss_pred             HHhhhHHHHhhhhhhhhhhHHHH------HHHHHHHHHHHHHHhhCCChhhhHHHHHHHHHHHHHHHHhhccccccccHH
Confidence            33456889999999999998765      5666666666666553 2221        3667788999999988888999


Q ss_pred             HHHHhhCCCchhhHHHHHHhHhhhhHHHhhhhHHHHHhh
Q 017795          251 AASELFGLKSFGALYNFLTLASPAGSLIFSGVIASGIYD  289 (366)
Q Consensus       251 ~~se~f~~~~~g~~~g~~~~~~~~G~~i~gp~i~G~l~d  289 (366)
                      +++|.++.++|+...++...+..+|..+ ++.+.+.+..
T Consensus       120 ~~~~~~~~~~r~~~~~~~~~~~~~G~~i-~~~~~~~~~~  157 (394)
T TIGR00883       120 YLAEYAPPGKRGFYGSFQQVGAPVGLLL-AALTVLLLSY  157 (394)
T ss_pred             HhhhcCCcccchHHHHHHHHHHHHHHHH-HHHHHHHHHH
Confidence            9999999999999999999999999996 8887776654

This model represents the metabolite:H+ symport subfamily of the major facilitator superfamily (pfam00083), including citrate-H+ symporters, dicarboxylate:H+ symporters, the proline/glycine-betaine transporter ProP, etc.

>PF03825 Nuc_H_symport: Nucleoside H+ symporter

Probab=99.01  E-value=2.5e-08  Score=98.44  Aligned_cols=159  Identities=19%  Similarity=0.195  Sum_probs=109.9

Q ss_pred             CHHHHhhhhHHHHHHHHHHHhhhhHHHHHhcHHHHHHHhC-CChhHH--HHHHHHHHHhhhhhhhhhhhhhhhhhccCch
Q 017795          128 TLPQALMKADFLLLFFSLVLASGSGLTVIDNLGQICQSLG-YADTSI--YVSMISIWNFLGRVGGGYFSEAIVRKFAYPR  204 (366)
Q Consensus       128 ~~~~~l~~~~~~ll~~~~~~~~~~~~~~~~~l~~i~~~~g-~~~~~~--~~sl~~i~~~~g~~~~G~lsD~~grr~~~~R  204 (366)
                      +..+.+|+++++.+++..++...+...+..+.+.+.++.| ++....  ..++-.+...+.-...+++-.|+|.|+    
T Consensus       199 ~~~~llk~~~~~~Fll~~~l~~~~~~~~~~f~~~yl~~~gg~~~~~~g~~~~l~~~aEi~~f~~~~~~~~r~g~~~----  274 (400)
T PF03825_consen  199 DALKLLKNPRFLVFLLAAFLIGISHAAYYTFFSIYLQELGGYSGSTIGILWALGVVAEIPFFFFSGRFLKRFGIKW----  274 (400)
T ss_pred             HHHHHhcCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccchhhHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHH----
Confidence            3457889999888777777766666667778888999998 665443  334444444444445555545554432    


Q ss_pred             hHHHHHHHHHHHHHHHHHHhc-ch-hHHHHH----HHHHHHHhhhhhhhHHHHHHHhhCCCchhhHHHHHHh-HhhhhHH
Q 017795          205 PVAMAVAQVVMAFALLYYAIG-WP-GEIYVT----TVLVGLSYGAHWAIVPAAASELFGLKSFGALYNFLTL-ASPAGSL  277 (366)
Q Consensus       205 ~~~~~~~~~~~~~~~~l~~~~-~~-~~l~~~----~~l~G~~~g~~~~~~~~~~se~f~~~~~g~~~g~~~~-~~~~G~~  277 (366)
                        .+.++.+..++=..+++.. ++ ...++.    ..+-|++++..+.....++.+..|++.++++.++.+. ...+|..
T Consensus       275 --ll~~a~~~~~vR~~l~a~~~~~~~~~~~~~~l~q~lhG~tf~~~~~a~~~yi~~~~p~~~~at~Q~l~~~~~~Glg~~  352 (400)
T PF03825_consen  275 --LLLLALVAYAVRWLLYAYFSDPWPFIVALQLLGQLLHGLTFGLFHAASVRYIDRIAPPELRATAQGLYSALSFGLGGA  352 (400)
T ss_pred             --HHHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHhCCccchHHHHHHHHHHHhhHHHH
Confidence              2355555555545555533 33 222222    3457999999999899999999999999999999876 4678999


Q ss_pred             HhhhhHHHHHhhhhhh
Q 017795          278 IFSGVIASGIYDYYAE  293 (366)
Q Consensus       278 i~gp~i~G~l~d~~~~  293 (366)
                      + |..++|+++|..+.
T Consensus       353 i-G~~igG~l~~~~g~  367 (400)
T PF03825_consen  353 I-GSLIGGWLYDAFGA  367 (400)
T ss_pred             H-HHHHHHHHHHHhcc
Confidence            6 99999999999873

>PRK14995 methyl viologen resistance protein SmvA; Provisional

Probab=99.01  E-value=1.9e-08  Score=101.97  Aligned_cols=155  Identities=11%  Similarity=-0.039  Sum_probs=118.4

Q ss_pred             HHHhhhhHHHHHHHHHHHhhhhHHHHHhcHHHHHHH-hCCChhHH--HHHHHHHHHhhhhhhhhhhhhhhhhhccCchhH
Q 017795          130 PQALMKADFLLLFFSLVLASGSGLTVIDNLGQICQS-LGYADTSI--YVSMISIWNFLGRVGGGYFSEAIVRKFAYPRPV  206 (366)
Q Consensus       130 ~~~l~~~~~~ll~~~~~~~~~~~~~~~~~l~~i~~~-~g~~~~~~--~~sl~~i~~~~g~~~~G~lsD~~grr~~~~R~~  206 (366)
                      .+.++++.++...+..++..........++|.+.+. +|++..++  ......++..++.++.|+++||+++|+..    
T Consensus       253 ~~lf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lq~v~g~s~~~ag~~~~~~~~~~~~~~~~~g~l~~r~g~~~~~----  328 (495)
T PRK14995        253 MRLFTHRIILSGVVMAMTAMITLVGFELLMAQELQFVHGLSPLEAGMFMLPVMVASGFSGPIAGILVSRLGLRLVA----  328 (495)
T ss_pred             HHHhCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCchHHH----
Confidence            467788888877776666666666666778887765 79988766  66667788899999999999999876533    


Q ss_pred             HHHHHHHHHHHHHHHHH-h---cchhHHHHHHHHHHHHhhhhhhhHHHHHHHhhCCCchhhHHHHHHhHhhhhHHHhhhh
Q 017795          207 AMAVAQVVMAFALLYYA-I---GWPGEIYVTTVLVGLSYGAHWAIVPAAASELFGLKSFGALYNFLTLASPAGSLIFSGV  282 (366)
Q Consensus       207 ~~~~~~~~~~~~~~l~~-~---~~~~~l~~~~~l~G~~~g~~~~~~~~~~se~f~~~~~g~~~g~~~~~~~~G~~i~gp~  282 (366)
                        ..+.++.+++.+++. .   .+....+...++.|+|.|...+.....+.+..+.+++|.+.++.++...+|+.+ |+.
T Consensus       329 --~~g~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~G~g~g~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~lG~~~-G~a  405 (495)
T PRK14995        329 --TGGMALSALSFYGLAMTDFSTQQWQAWGLMALLGFSAASALLASTSAIMAAAPPEKAAAAGAIETMAYELGAGL-GIA  405 (495)
T ss_pred             --HHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHhHHHHHHHHHHHHHhcCCHHhcchHHHHHHHHHHHHHHH-HHH
Confidence              455555555554433 1   223345567778899998887777777888899999999999999999999996 999


Q ss_pred             HHHHHhhhh
Q 017795          283 IASGIYDYY  291 (366)
Q Consensus       283 i~G~l~d~~  291 (366)
                      +.|.+++..
T Consensus       406 i~g~i~~~~  414 (495)
T PRK14995        406 IFGLLLSRS  414 (495)
T ss_pred             HHHHHHHHH
Confidence            999998753

>PF01306 LacY_symp: LacY proton/sugar symporter; InterPro: IPR022814 In bacteria there are a number of families of transport proteins, including symporters and antiporters, that mediate the intake of a variety of sugars with the concomitant uptake of hydrogen ions (proton symporters) []

Probab=98.99  E-value=1.8e-07  Score=91.96  Aligned_cols=183  Identities=15%  Similarity=0.097  Sum_probs=129.7

Q ss_pred             HHHHhhhhHHHHHHHHHHHhhhhHHHHHhcHHHHHHHhCCCh----hHH--HHHHHHHHHhhhhhhhhhhhhhhhhhccC
Q 017795          129 LPQALMKADFLLLFFSLVLASGSGLTVIDNLGQICQSLGYAD----TSI--YVSMISIWNFLGRVGGGYFSEAIVRKFAY  202 (366)
Q Consensus       129 ~~~~l~~~~~~ll~~~~~~~~~~~~~~~~~l~~i~~~~g~~~----~~~--~~sl~~i~~~~g~~~~G~lsD~~grr~~~  202 (366)
                      ..+.+|+++||.+.+...........+....+.+.+++--+.    ...  ..++-.+..++.-.+..++-+|+|.|+.+
T Consensus       213 ~~~l~k~~~fw~~~l~v~g~~~~Y~vfdqqf~~y~~~~f~~~~~g~~~~G~l~s~~v~~E~~~m~~~p~li~rig~k~~L  292 (412)
T PF01306_consen  213 VLSLFKMRNFWFFVLFVIGVAAIYDVFDQQFPIYFASFFQSAGQGNQMYGYLWSVQVFLEALMMFFSPWLINRIGAKNLL  292 (412)
T ss_dssp             HHHHTTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHH
T ss_pred             HHHHhcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccChhHHhHHHHHHHHHHHHHHHHHHHHHHhcChHhHH
Confidence            456788999998766544443444444444566665543332    212  56666677777888888899999887765


Q ss_pred             chhHHHHHHHHHHHHHHHHHH-hcchhHHHHHHHHHHHHhhhhhhhHHHHHHHhhCCCchhhHHHHH-HhHhhhhHHHhh
Q 017795          203 PRPVAMAVAQVVMAFALLYYA-IGWPGEIYVTTVLVGLSYGAHWAIVPAAASELFGLKSFGALYNFL-TLASPAGSLIFS  280 (366)
Q Consensus       203 ~R~~~~~~~~~~~~~~~~l~~-~~~~~~l~~~~~l~G~~~g~~~~~~~~~~se~f~~~~~g~~~g~~-~~~~~~G~~i~g  280 (366)
                            .++.+++++=....+ ..++..+.+.-.+-|+-.+.......-++++.|++|-.++.+.+. +.+..+|..+ .
T Consensus       293 ------llag~i~~iRi~~~~~~~~~~~i~~~klLH~~e~~l~lva~fkYI~~~fd~rlsAt~y~v~~~~~~~~~~~i-~  365 (412)
T PF01306_consen  293 ------LLAGVIMAIRIIGSGFATNPWVISLIKLLHALEFPLLLVAAFKYITAHFDKRLSATLYLVGFQFAKQIGIII-L  365 (412)
T ss_dssp             ------HHHHHHHHHHHHHHHT--SHHHHHHHHHHHHHHHHHHHHHHHHHHHHHS-GGGHHHHHHHHHTTTHHHHHHH-H
T ss_pred             ------HHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHhHHHHHHHHHHHHHHHHHHHH-H
Confidence                  666666666555555 456667777778888887777777777999999999999999985 6788899997 5


Q ss_pred             hhHHHHHhhhhhhhhhhhhhhccCCCCCcccCCCCCCcccCCcchHHHHHHHHHHHHHHHHHHHHHHhhc
Q 017795          281 GVIASGIYDYYAEKQAGLLWKYNGNMLPVSFRDQETPTCLGSICYSITCGIMAGLCIIAMVMSLIVVHRT  350 (366)
Q Consensus       281 p~i~G~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~g~~~~~~~f~i~~~~~~~~~~~~~~~~~~~  350 (366)
                      +.++|++||+.|                                |+.+|++++++.+...+++.+..++.
T Consensus       366 s~~~G~lyd~~G--------------------------------~~~tylimg~iv~~~~li~~f~l~~~  403 (412)
T PF01306_consen  366 SPLAGYLYDRIG--------------------------------FQHTYLIMGLIVLPFTLISAFTLKKD  403 (412)
T ss_dssp             HHHHHHHHHHHH--------------------------------HHHHHHHHHHHHHHHHHHHHHHS--S
T ss_pred             hhhHHhhHhhcC--------------------------------cHHHHHHHHHHHHHHHHHheeeecCC
Confidence            788999999998                                99999999988777777777665543

The lacY family of Escherichia coli and Klebsiella pneumoniae are proton/beta-galactoside symporters, which, like most sugar transporters, are integral membrane proteins with 12 predicted transmembrane (TM) regions. Also similar to the lacY family are the rafinose (rafB) and sucrose (cscB) permeases from E. coli []. This entry also includes bacterial phenylproprionate permease.; PDB: 1PV7_B 1PV6_A 2Y5Y_B 2CFQ_A 2V8N_B 2CFP_A.

>PRK11043 putative transporter; Provisional

Probab=98.99  E-value=3.3e-08  Score=96.96  Aligned_cols=159  Identities=15%  Similarity=0.111  Sum_probs=105.4

Q ss_pred             CHHHHhhhhHHHHHHHHHHHhhhhHHHHHhcHHHHHHHhCCChhHH--HHHHHHHHHhhhhhhhhhhhhhhhhhccCchh
Q 017795          128 TLPQALMKADFLLLFFSLVLASGSGLTVIDNLGQICQSLGYADTSI--YVSMISIWNFLGRVGGGYFSEAIVRKFAYPRP  205 (366)
Q Consensus       128 ~~~~~l~~~~~~ll~~~~~~~~~~~~~~~~~l~~i~~~~g~~~~~~--~~sl~~i~~~~g~~~~G~lsD~~grr~~~~R~  205 (366)
                      ++++.++++++|...+.+.+.......+..+.|.+.++.|++....  ......++..+|++..+++.||+++|+..   
T Consensus       195 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~g~s~~~~g~~~~~~~~~~~~g~~~~~~l~~r~~~~~~~---  271 (401)
T PRK11043        195 TFKQLLKSKTYLGNVLIFAACSAAFFAWLTGSPFILEQMGYSPADIGLSYVPQTIAFLVGGYGCRAALQKWGGEQLL---  271 (401)
T ss_pred             HHHHHHcChhHHHHHHHHHHHHHHHHHHHHHhHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHH---
Confidence            4667788888886665555555555566677888888899987655  34445567778888899999999876543   


Q ss_pred             HHHHHHHHHHHHHHHHHHh---cchhHHHHHHHHHHHHhhhhhhhHHHHHHHhhCCCchhhHHHHHHhHhhhhHHHhhhh
Q 017795          206 VAMAVAQVVMAFALLYYAI---GWPGEIYVTTVLVGLSYGAHWAIVPAAASELFGLKSFGALYNFLTLASPAGSLIFSGV  282 (366)
Q Consensus       206 ~~~~~~~~~~~~~~~l~~~---~~~~~l~~~~~l~G~~~g~~~~~~~~~~se~f~~~~~g~~~g~~~~~~~~G~~i~gp~  282 (366)
                      ....+...+..+...+...   .+...+.+...+.|++.+..++...+...+.++ +++|++.++.+.....++.+ ++.
T Consensus       272 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~g~~~g~~~~~~~~~~~~-~~~  349 (401)
T PRK11043        272 PWLLVLFAVSVIAIWLASLLSHPSLVPLLIPFCVMAAANGAIYPIVVAQALRPFP-QATGKAAALQNTLQLGLCFL-ASL  349 (401)
T ss_pred             HHHHHHHHHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHHHHHHHHHHHhhhCc-ccChHHHHHHHHHHHHHHHH-HHH
Confidence            1122222222222222221   222334445566777777777777766667665 67999999999988878885 888


Q ss_pred             HHHHHhhhh
Q 017795          283 IASGIYDYY  291 (366)
Q Consensus       283 i~G~l~d~~  291 (366)
                      +.|.+.|..
T Consensus       350 ~~g~l~~~~  358 (401)
T PRK11043        350 LVSALISTP  358 (401)
T ss_pred             HHHHccCCC
Confidence            888887744

>KOG0254 consensus Predicted transporter (major facilitator superfamily) [General function prediction only]

Probab=98.98  E-value=1.3e-08  Score=103.84  Aligned_cols=137  Identities=18%  Similarity=0.206  Sum_probs=111.2

Q ss_pred             HHHHHHHHHHhhhhhhhhhhhhhhhhhccCchhHHHHHHHHHHHHHHHHHH-hcchhHHHHHHHHHHHHhhhhhhhHHHH
Q 017795          173 IYVSMISIWNFLGRVGGGYFSEAIVRKFAYPRPVAMAVAQVVMAFALLYYA-IGWPGEIYVTTVLVGLSYGAHWAIVPAA  251 (366)
Q Consensus       173 ~~~sl~~i~~~~g~~~~G~lsD~~grr~~~~R~~~~~~~~~~~~~~~~l~~-~~~~~~l~~~~~l~G~~~g~~~~~~~~~  251 (366)
                      .+.+...++..+|.+.+|+++|++|||+.+      .++.++..++.++.+ ..+...+++++++.|+|.|+...+.+.+
T Consensus        93 ~~~s~~~lga~~g~l~~g~l~d~~GRk~~l------~~~~~~~~iG~ii~~~a~~~~~l~~GR~l~G~g~G~~~~~~piy  166 (513)
T KOG0254|consen   93 LLTSILNLGALVGSLLAGRLGDRIGRKKTL------LLAVVLFLIGAIIIALAPSWYQLIVGRILTGLGVGGASVLAPVY  166 (513)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhhhHHHH------HHHHHHHHHHHHHHHHhhhHHHHHHHHHHhccchhhhhhcchhh
Confidence            489999999999999999999999998776      777778888877766 4567789999999999999999999999


Q ss_pred             HHHhhCCCchhhHHHHHHhHhhhhHHHhhhhHHHHHhhhhhhhhhhhhhhccCCCCCcccCCCCCCcccCCcchHHHHHH
Q 017795          252 ASELFGLKSFGALYNFLTLASPAGSLIFSGVIASGIYDYYAEKQAGLLWKYNGNMLPVSFRDQETPTCLGSICYSITCGI  331 (366)
Q Consensus       252 ~se~f~~~~~g~~~g~~~~~~~~G~~i~gp~i~G~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~g~~~~~~~f~i  331 (366)
                      ++|+-|++.||...+.......+|..+ + .+.|.......                              ..||..+.+
T Consensus       167 ~sEiap~~~RG~l~~~~~l~~~~Gi~~-~-~~~~~~~~~~~------------------------------~~Wr~~~~~  214 (513)
T KOG0254|consen  167 ISEIAPAHIRGTLVSLYQLFITIGILL-G-YCINYGTSKVY------------------------------AGWRIPLGL  214 (513)
T ss_pred             HhhcCChhhhHHHHHHHHHHHHHHHHH-H-HHHhhhhccCC------------------------------ccHHHHHHH
Confidence            999999999999999999998877774 5 55555544320                              139988887


Q ss_pred             HHHHHHHHHHHHHHHHh
Q 017795          332 MAGLCIIAMVMSLIVVH  348 (366)
Q Consensus       332 ~~~~~~~~~~~~~~~~~  348 (366)
                      ..+.+++-.+. +++.+
T Consensus       215 ~~i~~~~~~~~-~~~~p  230 (513)
T KOG0254|consen  215 ALIPAVILALG-MLFLP  230 (513)
T ss_pred             HHHHHHHHHHH-HHhCC
Confidence            77777666555 44444

>PF13347 MFS_2: MFS/sugar transport protein

Probab=98.97  E-value=1.5e-08  Score=100.75  Aligned_cols=159  Identities=17%  Similarity=0.231  Sum_probs=124.6

Q ss_pred             CCHHHHhhhhHHHHHHHHHHHhhhhHHHHHhcHHHHHHH-hCCChhHH-HHHHHHHHHhhhhhhhhhhhhhhhhhccCch
Q 017795          127 FTLPQALMKADFLLLFFSLVLASGSGLTVIDNLGQICQS-LGYADTSI-YVSMISIWNFLGRVGGGYFSEAIVRKFAYPR  204 (366)
Q Consensus       127 ~~~~~~l~~~~~~ll~~~~~~~~~~~~~~~~~l~~i~~~-~g~~~~~~-~~sl~~i~~~~g~~~~G~lsD~~grr~~~~R  204 (366)
                      ..+++.++++.++.++++.++............+++.++ +|.+.... +..+..+...++.+++++++||+|+|+.+  
T Consensus       216 ~~~~~~~~nr~~~~l~~~~~~~~~~~~~~~~~~~y~~~~vl~~~~~~~~~~~~~~~~~~v~~~~~~~l~~r~gk~~~~--  293 (428)
T PF13347_consen  216 DSLRSLFRNRPFRILLLAFFLQWLAFALMNTFLPYYFTYVLGNEGLISIFMLIFFVASIVGSPLWGRLSKRFGKKKVY--  293 (428)
T ss_pred             cchhhhcccchHHHHHHHHHHHHhhhhhhhhHHHHHHHHHhcCchhhHHHHHHHHHHHHHHHHHHHHHHHHccceeeh--
Confidence            346778889998888888887766666666667777766 45553333 66778888899999999999999998877  


Q ss_pred             hHHHHHHHHHHHHHHHHHH-h--cchhHHHHHHHHHHHHhhhhhhhHHHHHHHhhC-------CCchhhHHHHHHhHhhh
Q 017795          205 PVAMAVAQVVMAFALLYYA-I--GWPGEIYVTTVLVGLSYGAHWAIVPAAASELFG-------LKSFGALYNFLTLASPA  274 (366)
Q Consensus       205 ~~~~~~~~~~~~~~~~l~~-~--~~~~~l~~~~~l~G~~~g~~~~~~~~~~se~f~-------~~~~g~~~g~~~~~~~~  274 (366)
                          ..+.++.+++.+++. .  .+...+++..++.|++.+..+.+.+++.+|..+       .+.-|..+++.+....+
T Consensus       294 ----~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~gi~~~~~~~~~~a~~ad~id~~e~~tg~r~~g~~~s~~~~~~k~  369 (428)
T PF13347_consen  294 ----IIGLLLAALGFLLLFFLGPGSPWLVLILFILAGIGYGAFFVIPWAMLADVIDYDEWKTGRRREGMYFSVNSFFIKI  369 (428)
T ss_pred             ----hhhHHHHHHHHHHHHHHHhhhHHHHHHHHHHhHhhhcccccccccccccchhhHHHhcCCCchHHHHHhhhhhhHH
Confidence                666666666655543 2  466778888999999999999999999988765       45579999999999999


Q ss_pred             hHHHhhhhHHHHHhhhhh
Q 017795          275 GSLIFSGVIASGIYDYYA  292 (366)
Q Consensus       275 G~~i~gp~i~G~l~d~~~  292 (366)
                      |..+ ++.+.|.+.+..|
T Consensus       370 ~~~l-a~~i~g~~l~~~G  386 (428)
T PF13347_consen  370 GQGL-AGAIVGLLLALVG  386 (428)
T ss_pred             HHHH-HHHHHHHHHHHhC
Confidence            9996 8999999988765

>PF07690 MFS_1: Major Facilitator Superfamily; InterPro: IPR011701 Among the different families of transporter, only two occur ubiquitously in all classifications of organisms

Probab=98.94  E-value=5.9e-09  Score=99.32  Aligned_cols=149  Identities=16%  Similarity=0.233  Sum_probs=107.7

Q ss_pred             HHHHhhhhHHHHHHHHHHHhhhhHHHHHhcHHHH-HHHhCCC-hhHH--HHHHHHHHHhhhhhhhhhhhhhhhhhccCch
Q 017795          129 LPQALMKADFLLLFFSLVLASGSGLTVIDNLGQI-CQSLGYA-DTSI--YVSMISIWNFLGRVGGGYFSEAIVRKFAYPR  204 (366)
Q Consensus       129 ~~~~l~~~~~~ll~~~~~~~~~~~~~~~~~l~~i-~~~~g~~-~~~~--~~sl~~i~~~~g~~~~G~lsD~~grr~~~~R  204 (366)
                      +++.++++.+|.+....++..........++|.+ .+.+|++ ....  ..++..+...+++++.|+++||+++|+..  
T Consensus       199 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~--  276 (352)
T PF07690_consen  199 FKSLFKNPVLWILLIAFFLFFFVFSGFSFFLPLYLQEVLGFSGPSQAGLLFSIFGIVGIIGSLLAGRLSDRFGRRRRL--  276 (352)
T ss_dssp             CTHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHCCTHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHH--
T ss_pred             cccccccchhhhhhhhhhHHHHHHHHhhcccchhhhhccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcHHHH--
Confidence            4566677777755555555555555677888887 6778888 4544  58888888889999999999999875433  


Q ss_pred             hHHHHHHHHHHHHHHHHHHh-cchhHHHHHHHHHHHHhhhhhhhHHHHHHHhhCCCchhhHHHHHHhHhhhhHHHhhh
Q 017795          205 PVAMAVAQVVMAFALLYYAI-GWPGEIYVTTVLVGLSYGAHWAIVPAAASELFGLKSFGALYNFLTLASPAGSLIFSG  281 (366)
Q Consensus       205 ~~~~~~~~~~~~~~~~l~~~-~~~~~l~~~~~l~G~~~g~~~~~~~~~~se~f~~~~~g~~~g~~~~~~~~G~~i~gp  281 (366)
                       ........+..++..+... .+....++..++.|++.+..++...+.+.+.+|++++|+++|+.+....+|+.+ ||
T Consensus       277 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~~~~i-gP  352 (352)
T PF07690_consen  277 -LIAILLLILGALGLLLLPFSSSPVWLIIALFLIGFGFGIVFPILFSLIQELVPPEYRGTAFGLFNSIGSLGGII-GP  352 (352)
T ss_dssp             -HHHHHHHHHHHHHHCCSHHHCHHHHHHHHHHHHHHHHHHHCHHHHHHHHCCCHTCHHHHHHHHHHHHHHHHHHH-HH
T ss_pred             -HHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHH-CC
Confidence             2222222222222222222 234456667788899999889999999999999999999999999999999996 76

These are the ATP-Binding Cassette (ABC) superfamily and the Major Facilitator Superfamily (MFS). The MFS transporters are single-polypeptide secondary carriers capable only of transporting small solutes in response to chemiosmotic ion gradients [, ].; GO: 0055085 transmembrane transport, 0016021 integral to membrane; PDB: 2GFP_B 3O7P_A 3O7Q_A 1PW4_A.

>TIGR01301 GPH_sucrose GPH family sucrose/H+ symporter

Probab=98.93  E-value=5.3e-08  Score=97.95  Aligned_cols=176  Identities=14%  Similarity=0.086  Sum_probs=116.3

Q ss_pred             hhHHHHHhcHHHHHHHhCCChhHH--HHHHHHHHHhhhhhhhhhhhhh----hhhhccCchhHHHHHHHHHHHHHHHHHH
Q 017795          150 GSGLTVIDNLGQICQSLGYADTSI--YVSMISIWNFLGRVGGGYFSEA----IVRKFAYPRPVAMAVAQVVMAFALLYYA  223 (366)
Q Consensus       150 ~~~~~~~~~l~~i~~~~g~~~~~~--~~sl~~i~~~~g~~~~G~lsD~----~grr~~~~R~~~~~~~~~~~~~~~~l~~  223 (366)
                      ........+++++.+++|.+....  ...+..+...+..|++|++|||    +|||+.+     +..+.+..+++++++.
T Consensus        18 ~~~~l~~~~l~~yl~~lg~~~~~~~~i~~~~~l~~~i~~Pi~G~lSDr~~sr~GRRrp~-----il~g~~~~~~~l~ll~   92 (477)
T TIGR01301        18 FGWALQLSLLTPYVQELGIPHAWASIIWLCGPLSGLLVQPLVGYLSDRCTSRFGRRRPF-----IAAGAALVAFAVILIG   92 (477)
T ss_pred             HHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHhHeeehhcCCCCCCCChHHH-----HHHHHHHHHHHHHHHH
Confidence            333445567778899999987665  6777788899999999999995    7875443     2334444444544443


Q ss_pred             hcch------------------hHHHHHHHHHHHHhhhhhhhHHHHHHHhhCCCch--hhHHHHHHhHhhhhHHHhhhhH
Q 017795          224 IGWP------------------GEIYVTTVLVGLSYGAHWAIVPAAASELFGLKSF--GALYNFLTLASPAGSLIFSGVI  283 (366)
Q Consensus       224 ~~~~------------------~~l~~~~~l~G~~~g~~~~~~~~~~se~f~~~~~--g~~~g~~~~~~~~G~~i~gp~i  283 (366)
                      ....                  ....++..+..++.....+..-++++|+++.+++  +.++++.+...++|+.+ |+.+
T Consensus        93 ~~~~~~~~~~~~~~~~~~~~~i~~~~i~~~lld~~~n~~~~p~rALiaDl~p~~~~~~~~a~~~~~~~~~lG~il-g~~~  171 (477)
T TIGR01301        93 FAADIGHLFGDNLDKKTKPRAIIVFVVGFWILDVANNMLQGPCRAFLADLTGGDARRTRIANAYFSFFMAIGNVL-GYAA  171 (477)
T ss_pred             hCchhhhhccccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccCchhHHHHHHHHHHHHHHHHHHHH-HHHH
Confidence            2111                  0112223334456666667778899999998754  67899999999999996 8887


Q ss_pred             HHHH--hhhhhhhhhhhhhhccCCCCCcccCCCCCCcccCCcchHHHHHHHHHHHHHHHHHHHHHHhhc
Q 017795          284 ASGI--YDYYAEKQAGLLWKYNGNMLPVSFRDQETPTCLGSICYSITCGIMAGLCIIAMVMSLIVVHRT  350 (366)
Q Consensus       284 ~G~l--~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~g~~~~~~~f~i~~~~~~~~~~~~~~~~~~~  350 (366)
                      +|+.  .+..+                   ....+..+.-+.+++..|++.+++.+++.++.++..+|.
T Consensus       172 g~~~~~~~~~~-------------------~~~~~~~~~~~~~~~~~F~i~a~~l~i~~l~t~~~v~E~  221 (477)
T TIGR01301       172 GAYSGLYKIFP-------------------FTKTEACGVSCANLKSCFLIDIILLAILTYIALSAVKEN  221 (477)
T ss_pred             HHHHhHHHhcc-------------------cccccccccccchHHHHHHHHHHHHHHHHHHHeeeeecc
Confidence            7764  22211                   001112233445699999998888888887777766653

This model represents sucrose/proton symporters, found in plants, from the Glycoside-Pentoside-Hexuronide (GPH)/cation symporter family. These proteins are predicted to have 12 transmembrane domains. Members may export sucrose (e.g. SUT1, SUT4) from green parts to the phloem for long-distance transport or import sucrose (e.g SUT2) to sucrose sinks such as the tap root of the carrot.

>TIGR00886 2A0108 nitrite extrusion protein (nitrite facilitator)

Probab=98.91  E-value=2.2e-08  Score=96.45  Aligned_cols=141  Identities=16%  Similarity=0.145  Sum_probs=96.0

Q ss_pred             HHHHhhhhHHHHHHHHHHHhhhhHHHHHhcHHHHHHH-hCCChhHH--HHHHHHHHHhhhhhhhhhhhhhhhhhccCchh
Q 017795          129 LPQALMKADFLLLFFSLVLASGSGLTVIDNLGQICQS-LGYADTSI--YVSMISIWNFLGRVGGGYFSEAIVRKFAYPRP  205 (366)
Q Consensus       129 ~~~~l~~~~~~ll~~~~~~~~~~~~~~~~~l~~i~~~-~g~~~~~~--~~sl~~i~~~~g~~~~G~lsD~~grr~~~~R~  205 (366)
                      .++.++++++|.+.+.+++.......+..++|++.++ +|++..++  +.++..+...++++++|+++||+++|+..   
T Consensus       218 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~~r~g~~~~~---  294 (366)
T TIGR00886       218 QLKVFRDRHTWILALLYSVTFGSFLGVSSIFAMFFKDQFGLSKVTAGAYASLGGLLGSLARPLGGAISDRLGGARKL---  294 (366)
T ss_pred             HHHHHhccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHHHhhccchHHHhhccchhH---
Confidence            4456677888888777777666666777888888865 68877655  67777888999999999999999987543   


Q ss_pred             HHHHHHHHHHHHHHHHH--Hhc---chhHHHHHHHHHHHHhhhhhhhHHHHHHHhhCCCchhhHHHHHHhHhhhhH
Q 017795          206 VAMAVAQVVMAFALLYY--AIG---WPGEIYVTTVLVGLSYGAHWAIVPAAASELFGLKSFGALYNFLTLASPAGS  276 (366)
Q Consensus       206 ~~~~~~~~~~~~~~~l~--~~~---~~~~l~~~~~l~G~~~g~~~~~~~~~~se~f~~~~~g~~~g~~~~~~~~G~  276 (366)
                         .......+.+..++  ...   +.....+...+.+++.|...+..++.++++++ +++|+.+|+.+....+|+
T Consensus       295 ---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~-~~~g~~~g~~~~~~~~g~  366 (366)
T TIGR00886       295 ---LMSFLGVAMGAFLVVLGLVSPLSLAVFIVLFVALFFFSGAGNGSTFALVPHIFR-RATGAVSGLVGAIGNLGG  366 (366)
T ss_pred             ---HHHHHHHHHHHHHHHhcCCCcchHHHHHHHHHHHHHHhccccchhhhcchhhch-hhcccHHHHHHHhccCCC
Confidence               22233333333222  222   22333344444555556556667777888885 799999999988877653

>PRK10473 multidrug efflux system protein MdtL; Provisional

Probab=98.91  E-value=6.5e-08  Score=94.60  Aligned_cols=151  Identities=11%  Similarity=0.071  Sum_probs=87.4

Q ss_pred             HHHHhhhhHHHHHHHHHHHhhhhHHHHHhcHHHHH-HHhCCChhHH--HHHHHHHHHhhhhhhhhhhhhhhhhhccCchh
Q 017795          129 LPQALMKADFLLLFFSLVLASGSGLTVIDNLGQIC-QSLGYADTSI--YVSMISIWNFLGRVGGGYFSEAIVRKFAYPRP  205 (366)
Q Consensus       129 ~~~~l~~~~~~ll~~~~~~~~~~~~~~~~~l~~i~-~~~g~~~~~~--~~sl~~i~~~~g~~~~G~lsD~~grr~~~~R~  205 (366)
                      .++.++++.++...+...+.......+..+.|.+. +++|++....  ..+...++..+++++.|+++||++||+..   
T Consensus       196 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~i~~~~~~~~l~~r~g~~~~~---  272 (392)
T PRK10473        196 NSESLLNRFFLSRLVITTLSVTVILTFVNTSPVLLMEQMGFSRGEYAIIMALTAGVSMTVSFSTPFALGIFKPRTLM---  272 (392)
T ss_pred             HHHHHhCHHHHHHHHHHHHHHHHHHHHHHhCHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHH---
Confidence            34567788777655554444444444555566655 4578887654  66777888899999999999999987544   


Q ss_pred             HHHHHHHHHHHHHHHHHHh-cchhHHHHHHHHHHHHhhhhhhhHHHHHHHhhCCCc-hhhHHHHHHhHhhhhHHHhhhhH
Q 017795          206 VAMAVAQVVMAFALLYYAI-GWPGEIYVTTVLVGLSYGAHWAIVPAAASELFGLKS-FGALYNFLTLASPAGSLIFSGVI  283 (366)
Q Consensus       206 ~~~~~~~~~~~~~~~l~~~-~~~~~l~~~~~l~G~~~g~~~~~~~~~~se~f~~~~-~g~~~g~~~~~~~~G~~i~gp~i  283 (366)
                         ..+.++..++.+++.. ......+....+.+.|.+..++.  ....++.+.++ -|.+.++.    .++..+ |+.+
T Consensus       273 ---~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~--~~~~~~~~~~~~~g~~~~~~----~~~~~~-g~~~  342 (392)
T PRK10473        273 ---LTSQVLFLAAGITLALSPSHAVSLFGITLICAGFSVGFGV--AMSQALGPFSLRAGVASSTL----GIAQVC-GSSL  342 (392)
T ss_pred             ---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHH--HHHHHhccCcccccHHHHHH----HHHHHH-HHHH
Confidence               4455555555444332 22233344444444444443333  23334444333 34444443    445553 5666


Q ss_pred             HHHHhhhhh
Q 017795          284 ASGIYDYYA  292 (366)
Q Consensus       284 ~G~l~d~~~  292 (366)
                      ++++.+..+
T Consensus       343 ~~~l~~~~g  351 (392)
T PRK10473        343 WIWLAAVLG  351 (392)
T ss_pred             HHHHHHHhc
Confidence            777777665

>KOG2615 consensus Permease of the major facilitator superfamily [General function prediction only]

Probab=98.91  E-value=4.9e-09  Score=100.16  Aligned_cols=108  Identities=19%  Similarity=0.172  Sum_probs=91.6

Q ss_pred             HHHHHHHHHhhhhhhhhhhhhhhhhhccCchhHHHHHHHHHHHHHHHHHHhc-chhHHHHHHHHHHHHhhhhhhhHHHHH
Q 017795          174 YVSMISIWNFLGRVGGGYFSEAIVRKFAYPRPVAMAVAQVVMAFALLYYAIG-WPGEIYVTTVLVGLSYGAHWAIVPAAA  252 (366)
Q Consensus       174 ~~sl~~i~~~~g~~~~G~lsD~~grr~~~~R~~~~~~~~~~~~~~~~l~~~~-~~~~l~~~~~l~G~~~g~~~~~~~~~~  252 (366)
                      +.|.+++..++..+.+|.+||++|||..+      .++.+..++.+.+++.. +...+.+++++.|+.-|- .++.-+++
T Consensus        73 lGSsF~ilQ~~sS~~~G~~SD~yGRkpvl------l~c~~~va~s~ll~~~S~~F~afv~aR~l~Gi~kgn-l~v~rAii  145 (451)
T KOG2615|consen   73 LGSSFSILQFISSPLWGCLSDRYGRKPVL------LACLIGVALSYLLWALSRNFAAFVLARFLGGIFKGN-LSVIRAII  145 (451)
T ss_pred             HhhHHHHHHHHhhhhhhhhhhhhCchHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCc-hHHHHHHH
Confidence            78899999999999999999999998765      66666666666666643 343555669999988765 57888999


Q ss_pred             HHhhCCCchhhHHHHHHhHhhhhHHHhhhhHHHHHhh
Q 017795          253 SELFGLKSFGALYNFLTLASPAGSLIFSGVIASGIYD  289 (366)
Q Consensus       253 se~f~~~~~g~~~g~~~~~~~~G~~i~gp~i~G~l~d  289 (366)
                      +|++++|+++.+++.++++..+|-.+ ||.++|++..
T Consensus       146 sdV~sek~r~l~ms~v~~a~~lGfil-GPmIGgyla~  181 (451)
T KOG2615|consen  146 SDVVSEKYRPLGMSLVGTAFGLGFIL-GPMIGGYLAQ  181 (451)
T ss_pred             HhhcChhhccceeeeeehhhhcchhh-cchhhhHHHh
Confidence            99999999999999999999999996 9999999987

>TIGR02718 sider_RhtX_FptX siderophore transporter, RhtX/FptX family

Probab=98.88  E-value=1.1e-07  Score=93.05  Aligned_cols=170  Identities=13%  Similarity=0.033  Sum_probs=108.2

Q ss_pred             HHHHHHHHhhhhHHHHHhcHHHHHHHhCCChhHH-H---HHHHHHHHhhhhhhh-hhhhhhhhhhccCchhHHHHHHHHH
Q 017795          140 LLFFSLVLASGSGLTVIDNLGQICQSLGYADTSI-Y---VSMISIWNFLGRVGG-GYFSEAIVRKFAYPRPVAMAVAQVV  214 (366)
Q Consensus       140 ll~~~~~~~~~~~~~~~~~l~~i~~~~g~~~~~~-~---~sl~~i~~~~g~~~~-G~lsD~~grr~~~~R~~~~~~~~~~  214 (366)
                      .++..++............+|.+.++.|++.+++ +   .+++.+..++..|++ ++.+||+|||+.+    . ...+++
T Consensus         5 ~~~~ly~~~g~~~~~~~p~lp~~l~~~g~~~~~iGl~~~~~l~~~~~~l~~p~~~~~~~~~~g~r~~~----i-~~~~~~   79 (390)
T TIGR02718         5 TLGLLYLSQGIPIGLAMDALPTLLREDGAPLTALAFLPLVGLPWVVKFLWAPLVDNWWSWRLGRRRSW----V-LPMQCL   79 (390)
T ss_pred             HHHHHHHHHHhHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHhccccccCCcchhH----H-HHHHHH
Confidence            3444444444444556678999999999998887 3   355566676666666 4467777775442    2 222222


Q ss_pred             HHHHHHHHH---hc-chh-HHHHHHHHHHHHhhhhhhhHHHHHHHhhCCCchhhHHHHHHhHhhhhHHHhhhhHHHHHhh
Q 017795          215 MAFALLYYA---IG-WPG-EIYVTTVLVGLSYGAHWAIVPAAASELFGLKSFGALYNFLTLASPAGSLIFSGVIASGIYD  289 (366)
Q Consensus       215 ~~~~~~l~~---~~-~~~-~l~~~~~l~G~~~g~~~~~~~~~~se~f~~~~~g~~~g~~~~~~~~G~~i~gp~i~G~l~d  289 (366)
                      .+.....+.   .. ... .+.....+.+++...+....-++..|..+.++++...+....+..+|..+ |+.+.+++.+
T Consensus        80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~d~~~d~~~~~~~~~~~~~~~~~~~~~g~~lG~~~-g~~~~~~l~~  158 (390)
T TIGR02718        80 VSACLASLALVGPDVAGAGWAVGLLACASLASATQDIATDGMAAEHFNGRTLAKGNAVQIAGVMIGFFG-GGAGTLVLFG  158 (390)
T ss_pred             HHHHHHHHHcCCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHhhhhHHHHHHHHHHHHHHHH-HHHHHHHHHH
Confidence            221111111   11 111 22333333445555555666667788888888888777777777888886 8888889998


Q ss_pred             hhhhhhhhhhhhccCCCCCcccCCCCCCcccCCcchHHHHHHHHHHHHHHHHHHHHHH
Q 017795          290 YYAEKQAGLLWKYNGNMLPVSFRDQETPTCLGSICYSITCGIMAGLCIIAMVMSLIVV  347 (366)
Q Consensus       290 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~g~~~~~~~f~i~~~~~~~~~~~~~~~~  347 (366)
                      ..+                                |+..|++.+++.++..+..+++.
T Consensus       159 ~~g--------------------------------w~~~f~~~a~l~~~~~~~~~~~~  184 (390)
T TIGR02718       159 KFG--------------------------------QRPAFLLVACVPLASLVCVLWLK  184 (390)
T ss_pred             HhC--------------------------------HHHHHHHHHHHHHHHHHHHHHcC
Confidence            887                                99999999988877666654443

RhtX from Sinorhizobium meliloti 2011 and FptX from Pseudomonas aeruginosa appear to be single polypeptide transporters, from the major facilitator family (see pfam07690) for import of siderophores as a means to import iron. This function was suggested by proximity to siderophore biosynthesis genes and then confirmed by study of knockout and heterologous expression phenotypes.

>KOG2532 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism]

Probab=98.87  E-value=8.3e-09  Score=103.58  Aligned_cols=144  Identities=14%  Similarity=0.197  Sum_probs=120.4

Q ss_pred             hCCChhHH--HHHHHHHHHhhhhhhhhhhhhhhhhhccCchhHHHHHHHHHHHHHHHHHHh---cchhHHHHHHHHHHHH
Q 017795          166 LGYADTSI--YVSMISIWNFLGRVGGGYFSEAIVRKFAYPRPVAMAVAQVVMAFALLYYAI---GWPGEIYVTTVLVGLS  240 (366)
Q Consensus       166 ~g~~~~~~--~~sl~~i~~~~g~~~~G~lsD~~grr~~~~R~~~~~~~~~~~~~~~~l~~~---~~~~~l~~~~~l~G~~  240 (366)
                      +.+++.+-  +.+.+..+..++.+.+|++.||+|-|+.+      ..+.++.+++.++...   .....+++.++++|++
T Consensus        68 ~~ws~~~k~~i~ss~~~G~i~~~iP~g~l~~k~G~r~v~------~~~~~~sa~~t~l~P~aa~~~~~~~~~~R~lqGl~  141 (466)
T KOG2532|consen   68 YDWSSTEKGLIFSSFFWGYILGQIPGGYLADKFGARRVF------FISGLISALLTLLTPLAASIGFYLLLVLRFLQGLG  141 (466)
T ss_pred             ecCCHHHHHHHHHHHHHHHHHHHcCcHHHHHHcCchHHH------HHHHHHHHHHHHHHHHHHHhcchhhHHHHHHhHHH
Confidence            45555443  88888999999999999999999988765      6666666666666442   2234678899999999


Q ss_pred             hhhhhhhHHHHHHHhhCCCchhhHHHHHHhHhhhhHHHhhhhHHHHHhhh-hhhhhhhhhhhccCCCCCcccCCCCCCcc
Q 017795          241 YGAHWAIVPAAASELFGLKSFGALYNFLTLASPAGSLIFSGVIASGIYDY-YAEKQAGLLWKYNGNMLPVSFRDQETPTC  319 (366)
Q Consensus       241 ~g~~~~~~~~~~se~f~~~~~g~~~g~~~~~~~~G~~i~gp~i~G~l~d~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~c  319 (366)
                      .|..++.+..+.+...|++++++..+++..+..+|.++ +-+++|++.+. .|                           
T Consensus       142 ~g~~~pa~~~i~~~W~P~~Ers~~~ail~~g~q~g~v~-~mp~sg~lc~s~~G---------------------------  193 (466)
T KOG2532|consen  142 QGVLFPAIGSILAKWAPPNERSTFIAILTAGSQLGTII-TMPVSGLLCESSLG---------------------------  193 (466)
T ss_pred             HhHHHhhhhceeeeECCHHHHHHHHHHHHHHHHHHHHH-HHHhHHHHhccCCC---------------------------
Confidence            99999999999999999999999999999999999996 78899999988 45                           


Q ss_pred             cCCcchHHHHHHHHHHHHHHHHHHHHHHh
Q 017795          320 LGSICYSITCGIMAGLCIIAMVMSLIVVH  348 (366)
Q Consensus       320 ~g~~~~~~~f~i~~~~~~~~~~~~~~~~~  348 (366)
                           |+.+|++.++++++-.++..++..
T Consensus       194 -----W~sifY~~g~~g~i~~~~w~~~~~  217 (466)
T KOG2532|consen  194 -----WPSIFYVFGIVGLIWFILWFLFYS  217 (466)
T ss_pred             -----CchHHHHHHHHHHHHHHHHHHHhc
Confidence                 999999999999887777776655

>PRK11102 bicyclomycin/multidrug efflux system; Provisional

Probab=98.85  E-value=1.2e-07  Score=91.98  Aligned_cols=149  Identities=9%  Similarity=0.040  Sum_probs=87.0

Q ss_pred             HHHHhhhhHHHHHHHHHHHhhhhHHHHHhcHHHHH-HHhCCChhHH--HHHHHHHHHhhhhhhhhhhhhhhhhhccCchh
Q 017795          129 LPQALMKADFLLLFFSLVLASGSGLTVIDNLGQIC-QSLGYADTSI--YVSMISIWNFLGRVGGGYFSEAIVRKFAYPRP  205 (366)
Q Consensus       129 ~~~~l~~~~~~ll~~~~~~~~~~~~~~~~~l~~i~-~~~g~~~~~~--~~sl~~i~~~~g~~~~G~lsD~~grr~~~~R~  205 (366)
                      +++.++++.+|...+..++.......+..+.|.+. +.+|++..+.  ..+...++..+++++.|+++||+++|+..   
T Consensus       187 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~~r~g~~~~~---  263 (377)
T PRK11102        187 FASLFRHKRVLGYMLASGFSFAGMFSFLTAGPFVYIELNGVSPQNFGYYFALNIVFLFVMTIINSRFVRRVGALNML---  263 (377)
T ss_pred             HHHHHcChHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCHHHHH---
Confidence            34566777777766665555555555556666655 4578887665  67777888899999999999999987644   


Q ss_pred             HHHHHHHHH---HHHHHHHHHh-c-chhHHHHHHHHHHHHhhhhhhhHHHHHHHhhCCCchhhHHHHHHhHh-hhhHHHh
Q 017795          206 VAMAVAQVV---MAFALLYYAI-G-WPGEIYVTTVLVGLSYGAHWAIVPAAASELFGLKSFGALYNFLTLAS-PAGSLIF  279 (366)
Q Consensus       206 ~~~~~~~~~---~~~~~~l~~~-~-~~~~l~~~~~l~G~~~g~~~~~~~~~~se~f~~~~~g~~~g~~~~~~-~~G~~i~  279 (366)
                         ..+.++   .++..+.... . ......++..+.+.+.+.........+.|..| +.+|...++.+... .+|+.+ 
T Consensus       264 ---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~g~~~~~~~~~~~~~g~~~-  338 (377)
T PRK11102        264 ---RFGLWIQFIMGIWLVVSALLDLGFWALVVGVAAFVGCVSMISSNAMAVILDEFP-HMAGTASSLAGTLRFGIGAIV-  338 (377)
T ss_pred             ---HHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHhhHHHHHHHhcccc-ccchHHHHHHHHHHHHHHHHH-
Confidence               222222   2222222211 1 11222333333443444434444455667665 77888888876543 345553 


Q ss_pred             hhhHHH
Q 017795          280 SGVIAS  285 (366)
Q Consensus       280 gp~i~G  285 (366)
                      |+++++
T Consensus       339 g~~~~~  344 (377)
T PRK11102        339 GALLSL  344 (377)
T ss_pred             HHHHHh
Confidence            555443

>TIGR00792 gph sugar (Glycoside-Pentoside-Hexuronide) transporter

Probab=98.84  E-value=4.5e-08  Score=96.95  Aligned_cols=166  Identities=13%  Similarity=0.152  Sum_probs=107.9

Q ss_pred             hcHHH-HHHHhCCChhHH--HHHHHHHHHhhhhhhhhhhhhhhhhhccCchhHHHHHHHHHHHHHHHHHH-hcch-----
Q 017795          157 DNLGQ-ICQSLGYADTSI--YVSMISIWNFLGRVGGGYFSEAIVRKFAYPRPVAMAVAQVVMAFALLYYA-IGWP-----  227 (366)
Q Consensus       157 ~~l~~-i~~~~g~~~~~~--~~sl~~i~~~~g~~~~G~lsD~~grr~~~~R~~~~~~~~~~~~~~~~l~~-~~~~-----  227 (366)
                      .++++ +.+++|.+...+  ..++..++..+..|+.|+++||.++|+..+|+++ ..+.+..+++.+++. ..+.     
T Consensus        20 ~~l~~~~~~~~g~s~~~~g~i~~~~~i~~~i~~p~~G~lsDr~~~r~Grrr~~i-~~~~~~~~i~~~~~~~~~~~~~~~~   98 (437)
T TIGR00792        20 TYLLFFYTDVLGLSAAFVGTLFLVARILDAITDPIMGNIVDRTRTRWGKFRPWL-LIGAIPFSIVLVLLFTTPDFSATGK   98 (437)
T ss_pred             HHHHHHHHHccCCCHHHHHHHHHHHHHHHHhccchheEeeecCCCCCCCcchhH-HHhHHHHHHHHHHHHhCCCCCcchH
Confidence            33444 455689988766  7888889999999999999999776655444444 444444454444433 2211     


Q ss_pred             -hHHHHHHHHHHHHhhhhhhhHHHHHHHhhC-CCchhhHHHHHHhHhhhhHHHhhhhHHHHHhhhhhhhhhhhhhhccCC
Q 017795          228 -GEIYVTTVLVGLSYGAHWAIVPAAASELFG-LKSFGALYNFLTLASPAGSLIFSGVIASGIYDYYAEKQAGLLWKYNGN  305 (366)
Q Consensus       228 -~~l~~~~~l~G~~~g~~~~~~~~~~se~f~-~~~~g~~~g~~~~~~~~G~~i~gp~i~G~l~d~~~~~~~~~~~~~~~~  305 (366)
                       ...++..++.+++++.......+..+|+.. .++|+...++......+|+.+ ++.+.+.+....+..           
T Consensus        99 ~~~~~~~~~~~~~~~~~~~~~~~al~~~~~~~~~~R~~~~~~~~~~~~~g~~l-~~~~~~~l~~~~~~~-----------  166 (437)
T TIGR00792        99 LVYAYITYILLGLFYSFVNIPYWSLVPAITLDPRERESLSTFRRFGATLGGLL-VAVIVLPLVSYFGGG-----------  166 (437)
T ss_pred             HHHHHHHHHHHHHHHHhhcccHhhCcccccCCHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHhCCC-----------
Confidence             123344455677766655666677788864 578999999988888888886 666666665433200           


Q ss_pred             CCCcccCCCCCCcccCCcchHHHHHHHHHHHHHHHHHHHHHHhh
Q 017795          306 MLPVSFRDQETPTCLGSICYSITCGIMAGLCIIAMVMSLIVVHR  349 (366)
Q Consensus       306 ~~~~~~~~~~~~~c~g~~~~~~~f~i~~~~~~~~~~~~~~~~~~  349 (366)
                                    ....+|++.+.+.++++++..++..+..++
T Consensus       167 --------------~~~~g~~~~~~i~~~l~~~~~~~~~~~~~e  196 (437)
T TIGR00792       167 --------------DDKFGWFMFALVLALIGVVSLIICFFGTKE  196 (437)
T ss_pred             --------------cccccHHHHHHHHHHHHHHHHHHHHcCCEe
Confidence                          001139999998888877766655544443

GPH:cation symporters catalyze uptake of sugars in symport with a monovalent cation (H+ or Na+). Members of this family includes transporters for melibiose, lactose, raffinose, glucuronides, pentosides and isoprimeverose. Mutants of two groups of these symporters (the melibiose permeases of enteric bacteria, and the lactose permease of Streptococcus thermophilus) have been isolated in which altered cation specificity is observed or in which sugar transport is uncoupled from cation symport (i.e., uniport is catalyzed). The various members of the family can use Na+, H+ or Li, Na+ or Li+, H+ or Li+, or only H+ as the symported cation. All of these proteins possess twelve putative transmembrane a-helical spanners.

>TIGR00901 2A0125 AmpG-related permease

Probab=98.83  E-value=9.2e-08  Score=92.22  Aligned_cols=138  Identities=17%  Similarity=0.148  Sum_probs=95.3

Q ss_pred             HHHhhhhH---HHHHHHHHHHhhhhHHHHHhcHHHHHHHhCCChhHH--HHHHHH-HHHhhhhhhhhhhhhhhhhhccCc
Q 017795          130 PQALMKAD---FLLLFFSLVLASGSGLTVIDNLGQICQSLGYADTSI--YVSMIS-IWNFLGRVGGGYFSEAIVRKFAYP  203 (366)
Q Consensus       130 ~~~l~~~~---~~ll~~~~~~~~~~~~~~~~~l~~i~~~~g~~~~~~--~~sl~~-i~~~~g~~~~G~lsD~~grr~~~~  203 (366)
                      ++.++++.   +|.+.+..++..........++|.+.+++|++..+.  ..+... +...+|.+++|+++||+++|+.. 
T Consensus       200 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~g~~~~~~~~~~~~~g~~~~g~l~~r~g~~~~l-  278 (356)
T TIGR00901       200 REFFQRKNMIQALLLLLLIVLYKLGDSAATVLTTLFLLDMGFSKEEIALVAKINGLLGAILGGLIGGIIMQPLNILYAL-  278 (356)
T ss_pred             HHHHHhcCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHhHHHHHHHHHHHHHHHHHHHhhhhHHHHH-
Confidence            34445543   666655555555555566778899888899988765  343333 56778999999999999987654 


Q ss_pred             hhHHHHHHHHHHHHHHHHHH-h-----------cchhHHHHHHHHHHHHhhhhhhhHHHHHHHhhCCCchhhHHHHHHhH
Q 017795          204 RPVAMAVAQVVMAFALLYYA-I-----------GWPGEIYVTTVLVGLSYGAHWAIVPAAASELFGLKSFGALYNFLTLA  271 (366)
Q Consensus       204 R~~~~~~~~~~~~~~~~l~~-~-----------~~~~~l~~~~~l~G~~~g~~~~~~~~~~se~f~~~~~g~~~g~~~~~  271 (366)
                           ..+.++.+++..++. .           .+...+..+.++.+++.+..++...+++.|.+|++++|+.+|+.+..
T Consensus       279 -----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~  353 (356)
T TIGR00901       279 -----LLFGIVQALTNAGFVWLASNGHHDGITFPHLLMLFLTITLEAVTGGLGTVAFVAFLSKLSNPKFGATQMALLSSL  353 (356)
T ss_pred             -----HHHHHHHHHHHHHHHHHHhcCcccccccchHHHHHHHHHHHHHHhHHHHHHHHHHHHHhcCCCccHHHHHHHHHH
Confidence                 333344444333322 1           11233455566778888988999999999999999999999998776


Q ss_pred             hh
Q 017795          272 SP  273 (366)
Q Consensus       272 ~~  273 (366)
                      .+
T Consensus       354 ~~  355 (356)
T TIGR00901       354 SA  355 (356)
T ss_pred             Hh
Confidence            54

>PRK11462 putative transporter; Provisional

Probab=98.83  E-value=2.7e-07  Score=92.85  Aligned_cols=157  Identities=8%  Similarity=0.054  Sum_probs=94.2

Q ss_pred             HHHhhhhHHHHHHHHHHHhhhhHHHHHhcHHHHHHHh-CCChhH-HHHHHHHHHHhhhhhhhhhhhhhhhhhccCchhHH
Q 017795          130 PQALMKADFLLLFFSLVLASGSGLTVIDNLGQICQSL-GYADTS-IYVSMISIWNFLGRVGGGYFSEAIVRKFAYPRPVA  207 (366)
Q Consensus       130 ~~~l~~~~~~ll~~~~~~~~~~~~~~~~~l~~i~~~~-g~~~~~-~~~sl~~i~~~~g~~~~G~lsD~~grr~~~~R~~~  207 (366)
                      +..++++.++.+....++.............++.+.. |..... .+.....+.+++|.+++++++||+++|+..    +
T Consensus       222 ~~~~~Nk~~~~l~~~~~~~~~~~~~~~~~~~y~~~y~~g~~~~~~~~l~~~~i~~iig~~l~~~l~~r~gkk~~~----~  297 (460)
T PRK11462        222 RDIWQNDQWRIVGLLTIFNILAVCVRGGAMMYYVTWILGTPEVFVAFLTTYCVGNLIGSALAKPLTDWKCKVTIF----W  297 (460)
T ss_pred             HHHhCChHHHHHHHHHHHHHHHHHHHHhHhhhhhhhhcCChHHHHHHHHHHHHHHHHHHHHHHHHHHHhChHHHH----H
Confidence            3455677776665554444443333333334444432 322222 256667788888999999999999887543    1


Q ss_pred             HHHHHHHHHHHHHHHHhcc--hhHHHHHHHHHHHHhhhhhhhHHHHHHHhhC-------CCchhhHHHHHHhHhhhhHHH
Q 017795          208 MAVAQVVMAFALLYYAIGW--PGEIYVTTVLVGLSYGAHWAIVPAAASELFG-------LKSFGALYNFLTLASPAGSLI  278 (366)
Q Consensus       208 ~~~~~~~~~~~~~l~~~~~--~~~l~~~~~l~G~~~g~~~~~~~~~~se~f~-------~~~~g~~~g~~~~~~~~G~~i  278 (366)
                       .........+.+++..+.  ...+++..++.|++.+...++.+++++|...       .+.-|..++..+...-+|..+
T Consensus       298 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~l~~~m~ad~~d~~e~~tG~r~~g~~~a~~~f~~Klg~al  376 (460)
T PRK11462        298 -WTNALLAVISLAMFFVPMQASITMFVFIFVIGVLHQLVTPIQWVMMSDTVDYGEWCNGKRLTGISFAGTLFVLKLGLAF  376 (460)
T ss_pred             -HHHHHHHHHHHHHHHhchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhHHhcCCCchHHHHHHHHHHHHHHHHH
Confidence             111112221222222222  2234455566777777767777777777644       555677778878888899996


Q ss_pred             hhhhHHHHHhhhhh
Q 017795          279 FSGVIASGIYDYYA  292 (366)
Q Consensus       279 ~gp~i~G~l~d~~~  292 (366)
                       |+.++|.+.+..|
T Consensus       377 -g~~i~g~iL~~~G  389 (460)
T PRK11462        377 -GGALIGWMLAYGG  389 (460)
T ss_pred             -HHHHHHHHHHHcC
Confidence             8999999888655

>KOG0253 consensus Synaptic vesicle transporter SV2 (major facilitator superfamily) [General function prediction only]

Probab=98.82  E-value=7e-08  Score=92.02  Aligned_cols=137  Identities=15%  Similarity=0.095  Sum_probs=99.9

Q ss_pred             HHHHHHHHhhhhhhhhhhhhhhhhhccCchhHHHHHHHHHHHHHHHHHHh-cchhHHHHHHHHHHHHhhhhhhhHHHHHH
Q 017795          175 VSMISIWNFLGRVGGGYFSEAIVRKFAYPRPVAMAVAQVVMAFALLYYAI-GWPGEIYVTTVLVGLSYGAHWAIVPAAAS  253 (366)
Q Consensus       175 ~sl~~i~~~~g~~~~G~lsD~~grr~~~~R~~~~~~~~~~~~~~~~l~~~-~~~~~l~~~~~l~G~~~g~~~~~~~~~~s  253 (366)
                      +-+.++..+-|-++.+++.||+|||+.+      +..++++++..+++.. .......+..+..-++..+.+...+.+.+
T Consensus       387 llitslaefPGlLIt~~iverlGRKkTM------al~l~~f~iflfll~~c~~rn~~tvllf~arafisg~fqvaYvYtP  460 (528)
T KOG0253|consen  387 LLITSLAEFPGLLITGVIVERLGRKKTM------ALSLILFGIFLFLLTTCKTRNAYTVLLFTARAFISGAFQVAYVYTP  460 (528)
T ss_pred             HHHHHHhhCCchhHHHHHHHHhcchhHH------HHHHHHHHHHHHHHHHhcCcchhHHHHHHHHHHHhchheEEEEecC
Confidence            4455677888999999999999999877      7777777776655442 33333333333344555566777888999


Q ss_pred             HhhCCCchhhHHHHHHhHhhhhHHHhhhhHHHHHhhhhhhhhhhhhhhccCCCCCcccCCCCCCcccCCcchHHHHHHHH
Q 017795          254 ELFGLKSFGALYNFLTLASPAGSLIFSGVIASGIYDYYAEKQAGLLWKYNGNMLPVSFRDQETPTCLGSICYSITCGIMA  333 (366)
Q Consensus       254 e~f~~~~~g~~~g~~~~~~~~G~~i~gp~i~G~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~g~~~~~~~f~i~~  333 (366)
                      |.||++.|+++.|..+....+|+++ .|.++ ...+..-                                +-.. .+.+
T Consensus       461 EVyPTavRatgvGtcSsmaRIggI~-~p~iA-~~~e~s~--------------------------------sl~i-~vy~  505 (528)
T KOG0253|consen  461 EVYPTAVRATGVGTCSSMARIGGIF-SPVIA-MRAELST--------------------------------SLPI-FVYG  505 (528)
T ss_pred             cccchhhhhcchhhhhhHHhhhhhh-hhHHH-HHhccce--------------------------------eehH-HHHH
Confidence            9999999999999999999999996 89988 3333221                                3333 4667


Q ss_pred             HHHHHHHHHHHHHHhhcHH
Q 017795          334 GLCIIAMVMSLIVVHRTKS  352 (366)
Q Consensus       334 ~~~~~~~~~~~~~~~~~r~  352 (366)
                      ++++++.+++.++..++|.
T Consensus       506 ~~~ilagIavcffPiEtkG  524 (528)
T KOG0253|consen  506 ALFILAGIAVCFFPIETKG  524 (528)
T ss_pred             HHHHHHHHHheeeeeccCC
Confidence            7888888888888777654

>COG0738 FucP Fucose permease [Carbohydrate transport and metabolism]

Probab=98.80  E-value=3.2e-07  Score=88.59  Aligned_cols=156  Identities=17%  Similarity=0.179  Sum_probs=113.7

Q ss_pred             CHHHHhhhhHHHHHHHHHHHhhhhHHHHHhcHHHHHHH-hCCChhHH--HHHHHHHHHhhhhhhhhhhhhhhhhhccCch
Q 017795          128 TLPQALMKADFLLLFFSLVLASGSGLTVIDNLGQICQS-LGYADTSI--YVSMISIWNFLGRVGGGYFSEAIVRKFAYPR  204 (366)
Q Consensus       128 ~~~~~l~~~~~~ll~~~~~~~~~~~~~~~~~l~~i~~~-~g~~~~~~--~~sl~~i~~~~g~~~~G~lsD~~grr~~~~R  204 (366)
                      ...++++++++++-.++.|+..+.-.+.-++++.+..+ .|.+..++  +++.+..+.++||.++-++-.|+-..+.+  
T Consensus       228 ~~~~l~~~~~~~~gvl~~FlYVG~Eva~gsfl~~y~~~~~g~~~~~aa~~~s~~~~~~~vGRFig~~lm~~~~~~k~L--  305 (422)
T COG0738         228 GLSSLFQNKHLRLGVLAIFLYVGAEVAIGSFLVSYLEELLGLNEQQAAYYLSFFWVGFMVGRFIGSALMSRIKPEKYL--  305 (422)
T ss_pred             hHHHHHhChHHHHHHHHHHHHHhHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCHHHHH--
Confidence            57889999999999999999999999999999999988 78777665  88999999999998777766676433222  


Q ss_pred             hHHHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHhhhhhhhHHHHHHHhhCCCchhhHHHHHHhHhhhhHHHhhhhHH
Q 017795          205 PVAMAVAQVVMAFALLYYAIGWPGEIYVTTVLVGLSYGAHWAIVPAAASELFGLKSFGALYNFLTLASPAGSLIFSGVIA  284 (366)
Q Consensus       205 ~~~~~~~~~~~~~~~~l~~~~~~~~l~~~~~l~G~~~g~~~~~~~~~~se~f~~~~~g~~~g~~~~~~~~G~~i~gp~i~  284 (366)
                          ....++..+-++.....+....+.+.++.|+..+..|+...+...+..| ++-....+++.+ ..+|+.+ -|++.
T Consensus       306 ----af~a~~~ill~~~~~l~~g~v~~~~l~~ig~F~simfPTIfslal~~l~-~~ts~~s~~l~m-aivGGAi-iP~l~  378 (422)
T COG0738         306 ----AFYALIAILLLLAVALIGGVVALYALFLIGLFNSIMFPTIFSLALKNLG-EHTSVGSGLLVM-AIVGGAI-IPPLQ  378 (422)
T ss_pred             ----HHHHHHHHHHHHHHHHhcChHHHHHHHHHHHHhHHHHHHHHHHHHhccC-ccccccceeeee-heecchH-HHHHH
Confidence                2222222222222223333445567778899999999999999999998 544444444444 4566665 59999


Q ss_pred             HHHhhhhh
Q 017795          285 SGIYDYYA  292 (366)
Q Consensus       285 G~l~d~~~  292 (366)
                      |++.|..+
T Consensus       379 G~i~d~~g  386 (422)
T COG0738         379 GVIADMFG  386 (422)
T ss_pred             HHHHHhhh
Confidence            99999987

>PF05977 MFS_3: Transmembrane secretion effector; InterPro: IPR010290 This family consists of the enterobactin exporter EntS proteins and putative permeases all belonging to the major facilitator superfamily

Probab=98.79  E-value=3.9e-07  Score=92.99  Aligned_cols=152  Identities=12%  Similarity=0.073  Sum_probs=104.6

Q ss_pred             hhhHHHHHHHHHHHhhhhHHHHHhcHHHHHHH-hCCChhHH--HHHHHHHHHhhhhhhhhhhhhhhhhhccCchhHHHHH
Q 017795          134 MKADFLLLFFSLVLASGSGLTVIDNLGQICQS-LGYADTSI--YVSMISIWNFLGRVGGGYFSEAIVRKFAYPRPVAMAV  210 (366)
Q Consensus       134 ~~~~~~ll~~~~~~~~~~~~~~~~~l~~i~~~-~g~~~~~~--~~sl~~i~~~~g~~~~G~lsD~~grr~~~~R~~~~~~  210 (366)
                      .++....+.+..++.......+...+|.+.++ +|.+....  +.+.++++..+|.++.+++.+++.+++.+      ..
T Consensus       216 ~~~~l~~~l~~~~~~~l~~~a~~aLlPl~a~~~l~~~a~~yGll~a~~gvGai~Gal~~~~l~~~~~~~~lv------~~  289 (524)
T PF05977_consen  216 SSPPLRSVLLRSFLFNLFASAVWALLPLFARDVLGGGASGYGLLLAAFGVGAILGALLLPRLRRRLSSRRLV------LL  289 (524)
T ss_pred             cchHHHHHHHHHHHHHHhhhHHHHhhhHHHHHHhCCcHHHHHHHHHHHHHHHHHHHHHHHHhhcccCcchhh------HH
Confidence            34444433333333333333444567887754 67766543  67777777777777777776666554333      55


Q ss_pred             HHHHHHHHHHHHHh-cchhHHHHHHHHHHHHhhhhhhhHHHHHHHhhCCCchhhHHHHHHhHhhhhHHHhhhhHHHHHhh
Q 017795          211 AQVVMAFALLYYAI-GWPGEIYVTTVLVGLSYGAHWAIVPAAASELFGLKSFGALYNFLTLASPAGSLIFSGVIASGIYD  289 (366)
Q Consensus       211 ~~~~~~~~~~l~~~-~~~~~l~~~~~l~G~~~g~~~~~~~~~~se~f~~~~~g~~~g~~~~~~~~G~~i~gp~i~G~l~d  289 (366)
                      +.++.+++.+.++. .+.....+..++.|++.....+...+.+-+..|.+.+|..+++..+....+..+ |..+.|.+.|
T Consensus       290 ~~~~~a~~~~~lal~~~~~~~~~~l~l~G~~~~~~~~~~~t~~Q~~~P~~~~GRv~si~~~~~~g~~~l-Gsll~G~la~  368 (524)
T PF05977_consen  290 ASLLFALALLLLALSPSFWLALIALFLAGAAWIIANSSLNTLVQLSVPDWVRGRVFSIYQMVFFGGMPL-GSLLWGFLAD  368 (524)
T ss_pred             HHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHhHHHHHHHHHHHHHHHH-HHHHHHHHHH
Confidence            56666666666664 344555667778888888877777888888899999999999999888877775 9999999999


Q ss_pred             hhh
Q 017795          290 YYA  292 (366)
Q Consensus       290 ~~~  292 (366)
                      ..+
T Consensus       369 ~~g  371 (524)
T PF05977_consen  369 HFG  371 (524)
T ss_pred             HhC
Confidence            887

EntS exports the siderophore enterobactin out of the cell. The genetic locus entS was changed from ybdA so as to reflect its relevant biological function [].

>KOG2504 consensus Monocarboxylate transporter [Carbohydrate transport and metabolism]

Probab=98.78  E-value=4.7e-08  Score=99.27  Aligned_cols=152  Identities=13%  Similarity=0.122  Sum_probs=122.1

Q ss_pred             hcHHHHHHHhCCChhHH--HHHHHHHHHhhhhhhhhhhhhhhhhhccCchhHHHHHHHHHHHHHHHHHHhc-chhH-HHH
Q 017795          157 DNLGQICQSLGYADTSI--YVSMISIWNFLGRVGGGYFSEAIVRKFAYPRPVAMAVAQVVMAFALLYYAIG-WPGE-IYV  232 (366)
Q Consensus       157 ~~l~~i~~~~g~~~~~~--~~sl~~i~~~~g~~~~G~lsD~~grr~~~~R~~~~~~~~~~~~~~~~l~~~~-~~~~-l~~  232 (366)
                      ...+.+.++++.+..++  ..++......+..|+.+.+.||+|.|...      .++.++.++|+++-.+. +.+. .+.
T Consensus        67 v~~~~~~~~f~~s~~~~~~i~sl~~~~~~~~gpl~s~l~~rfg~R~v~------i~G~~v~~~g~~lssF~~~i~~l~lt  140 (509)
T KOG2504|consen   67 LLFEELMDYFGSSSSQIAWIGSLLLGVYLLAGPLVSALCNRFGCRTVM------IAGGLVAALGLLLSSFATSLWQLYLT  140 (509)
T ss_pred             hhHHHHHHHhCCCccHHHHHHHHHHHHHHHhccHHHHHHhhcCchHHH------HHHHHHHHHHHHHHHHHhhHHHHHHH
Confidence            44667778888776644  78888888888999999999999988765      77888888888776643 3333 445


Q ss_pred             HHHHHHHHhhhhhhhHHHHHHHhhCCCchhhHHHHHHhHhhhhHHHhhhhHHHHHhhhhhhhhhhhhhhccCCCCCcccC
Q 017795          233 TTVLVGLSYGAHWAIVPAAASELFGLKSFGALYNFLTLASPAGSLIFSGVIASGIYDYYAEKQAGLLWKYNGNMLPVSFR  312 (366)
Q Consensus       233 ~~~l~G~~~g~~~~~~~~~~se~f~~~~~g~~~g~~~~~~~~G~~i~gp~i~G~l~d~~~~~~~~~~~~~~~~~~~~~~~  312 (366)
                      ..++.|+|.|..+.....++..+| .|+|+.+.|+...+.++|.+++ |.+.-++.+..|                    
T Consensus       141 ~gvi~G~G~~~~~~paiviv~~YF-~kkR~lA~Gia~~GsG~G~~~~-~~l~~~l~~~~G--------------------  198 (509)
T KOG2504|consen  141 FGVIGGLGLGLIYLPAVVILGTYF-EKKRALATGIAVSGTGVGTVVF-PPLLKYLLSKYG--------------------  198 (509)
T ss_pred             HHHHhhccchhhhcchhhhhhhHh-HHHHHHHHhhhhccCCcceeeH-HHHHHHHHHHhC--------------------
Confidence            677889999998888888888777 7889999999999999999986 888999999998                    


Q ss_pred             CCCCCcccCCcchHHHHHHHHHHHHHHHHHHHHHHh
Q 017795          313 DQETPTCLGSICYSITCGIMAGLCIIAMVMSLIVVH  348 (366)
Q Consensus       313 ~~~~~~c~g~~~~~~~f~i~~~~~~~~~~~~~~~~~  348 (366)
                                  ||+++++.+.+++-.++......+
T Consensus       199 ------------~r~~~l~~~~~~l~~~~~~~~~rp  222 (509)
T KOG2504|consen  199 ------------WRGALLIFGGISLNVLVAGALLRP  222 (509)
T ss_pred             ------------cHHHHHHHHHHHHHHHHHHHHcCC
Confidence                        999999999888666655555433

>PRK11652 emrD multidrug resistance protein D; Provisional

Probab=98.76  E-value=4.1e-07  Score=89.04  Aligned_cols=155  Identities=12%  Similarity=0.074  Sum_probs=96.3

Q ss_pred             HHHHhhhhHHHHHHHHHHHhhhhHHHHHhcHHHHHHH-hCCChhHH--HHHHHHHHHhhhhhhhhhhhhhhhhhccCchh
Q 017795          129 LPQALMKADFLLLFFSLVLASGSGLTVIDNLGQICQS-LGYADTSI--YVSMISIWNFLGRVGGGYFSEAIVRKFAYPRP  205 (366)
Q Consensus       129 ~~~~l~~~~~~ll~~~~~~~~~~~~~~~~~l~~i~~~-~g~~~~~~--~~sl~~i~~~~g~~~~G~lsD~~grr~~~~R~  205 (366)
                      +++.++++.+|...+..++.......+....+.+.++ +|++....  ......++..++.++.+++.||++++.     
T Consensus       200 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~g~~~~~~l~~~~~~~~-----  274 (394)
T PRK11652        200 YRTLLSNRRFNCYLLMLIGTLAGIAVFEACSGVLMGAVLGLSSMTVSILFILPIPAAFFGAWFAGRPNKRFSTLM-----  274 (394)
T ss_pred             HHHHHcChHHHHHHHHHHHHHHHHHHHHHhChHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----
Confidence            4556778888765555444433333344455666665 78887654  344445555566666677777665321     


Q ss_pred             HHHHHHHHHHHHHHHHHHh---cchhHHHHHHHHHHHHhhhhhhhHHHHHHHhhCCCchhhHHHHHHhHhhhhHHHhhhh
Q 017795          206 VAMAVAQVVMAFALLYYAI---GWPGEIYVTTVLVGLSYGAHWAIVPAAASELFGLKSFGALYNFLTLASPAGSLIFSGV  282 (366)
Q Consensus       206 ~~~~~~~~~~~~~~~l~~~---~~~~~l~~~~~l~G~~~g~~~~~~~~~~se~f~~~~~g~~~g~~~~~~~~G~~i~gp~  282 (366)
                      .......++..+.......   .+...++...++.|++.+...+...+...|.++ +++|+..++.+....+|+.+ ++.
T Consensus       275 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~-~~~g~~~~~~~~~~~lg~~~-~~~  352 (394)
T PRK11652        275 WQSVICCLLAGLLMWIPGWFGVMNVWTLLVPAALFFFGAGMLFPLATSGAMEPFP-YLAGTAGALLGGLQNIGSGL-AAL  352 (394)
T ss_pred             HHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc-ccchHHHHHHHHHHHHHHHH-HHH
Confidence            1112222222222222221   233445666778888888888888888888885 67899999999999999996 899


Q ss_pred             HHHHHhhh
Q 017795          283 IASGIYDY  290 (366)
Q Consensus       283 i~G~l~d~  290 (366)
                      ++|++.+.
T Consensus       353 ~~~~~~~~  360 (394)
T PRK11652        353 LSAMLPQT  360 (394)
T ss_pred             HHHHccCC
Confidence            88887654

>PRK11195 lysophospholipid transporter LplT; Provisional

Probab=98.75  E-value=6.7e-07  Score=87.97  Aligned_cols=129  Identities=12%  Similarity=-0.024  Sum_probs=82.9

Q ss_pred             HHhcHHHHHH-HhCCChhHH--HHHHHHHHHhhhhhhhhhhhhhhhhhccCchhHHHHHHHHHHHHHHHHHHhc-chhHH
Q 017795          155 VIDNLGQICQ-SLGYADTSI--YVSMISIWNFLGRVGGGYFSEAIVRKFAYPRPVAMAVAQVVMAFALLYYAIG-WPGEI  230 (366)
Q Consensus       155 ~~~~l~~i~~-~~g~~~~~~--~~sl~~i~~~~g~~~~G~lsD~~grr~~~~R~~~~~~~~~~~~~~~~l~~~~-~~~~l  230 (366)
                      ....+|.+.+ .+|++..+.  ..+...++..+|.+..+++.|+.++++..      ..+.+ +++..+++... +....
T Consensus       224 ~~~~~~~~~~~~lg~s~~~~G~~~~~~~~g~i~g~~~~~~l~~~~~~~~~~------~~g~~-~~~~~~~~~~~~~~~~~  296 (393)
T PRK11195        224 LRFLVLAWAPVALGITLNQPAYLQAVVAIGIAVGAGAAARLVTLETVLRVL------PAGIL-MGLVVLLMALQHSLLPA  296 (393)
T ss_pred             HHHHHHHHHHHHcCCChhHHHHHHHHHHHHHHHHHHHHHHHhcCCcccchH------HHHHH-HHHHHHHHHHHhHHHHH
Confidence            3344555554 468877665  66777778888888888888876654322      33332 23333333322 23334


Q ss_pred             HHHHHHHHHHhhhhhhhHHHHHHHhhCCCc-hhhHHHHHHhHhhhhHHHhhhhHHHHHhhhhh
Q 017795          231 YVTTVLVGLSYGAHWAIVPAAASELFGLKS-FGALYNFLTLASPAGSLIFSGVIASGIYDYYA  292 (366)
Q Consensus       231 ~~~~~l~G~~~g~~~~~~~~~~se~f~~~~-~g~~~g~~~~~~~~G~~i~gp~i~G~l~d~~~  292 (366)
                      .+..++.|++.+...+...+.+.+.-+.+. +|.+.++.++...+|..+ +..+.+.+ +..+
T Consensus       297 ~~~~~~~G~~~g~~~~~~~~~~q~~~~~~~~~g~~~a~~~~~~~~~~~~-~~~~~~~~-~~~~  357 (393)
T PRK11195        297 YPLLILIGALGGFFVVPMNALLQHRGHVLVGAGHSIAVQNFNENLAMLL-MLGLYSLL-VKLG  357 (393)
T ss_pred             HHHHHHHHHhhhhhhhhHHHHHHhhCcccccchhHHHHHhHHHHHHHHH-HHHHHHHH-HHcC
Confidence            456667888877766666777777544433 699999999999999996 88888855 5555

>COG2211 MelB Na+/melibiose symporter and related transporters [Carbohydrate transport and metabolism]

Probab=98.73  E-value=4.5e-07  Score=90.22  Aligned_cols=155  Identities=16%  Similarity=0.133  Sum_probs=106.9

Q ss_pred             HHhhhhHHHHHHHHHHHhhhhHHHHHhcHHHHHHH-hCCChhHH-HHHHHHHHH-hhhhhhhhhhhhhhhhhccCchhHH
Q 017795          131 QALMKADFLLLFFSLVLASGSGLTVIDNLGQICQS-LGYADTSI-YVSMISIWN-FLGRVGGGYFSEAIVRKFAYPRPVA  207 (366)
Q Consensus       131 ~~l~~~~~~ll~~~~~~~~~~~~~~~~~l~~i~~~-~g~~~~~~-~~sl~~i~~-~~g~~~~G~lsD~~grr~~~~R~~~  207 (366)
                      ..++|+.+..+.+++++...........+.++.+. +|.++... .....+.+. ..+.+++..+++|+|+|+.+     
T Consensus       231 ~~~~Nrp~~~~l~~~l~~~~~~~i~~s~~~yy~~y~lg~~~l~~~~~~~~~~~~~l~~~~~~p~L~~~~gkk~~~-----  305 (467)
T COG2211         231 LIFKNRPLLLLLLMNLLLFIAFNIRGSIMVYYVTYVLGDPELFAYLLLLASGAGLLIGLILWPRLVKKFGKKKLF-----  305 (467)
T ss_pred             HHHccchHHHHHHHHHHHHHHHHHHhhhhheeEEEEcCChHHHHHHHHHHHHHHHHHHHHhHHHHHHHhchHHHH-----
Confidence            45677777766666666555444444444444443 45555444 333334444 44588999999999998776     


Q ss_pred             HHHHHHHHHHHHHHHH-h--cchhHHHHHHHHHHHHhhhhhhhHHHHHHHhh-------CCCchhhHHHHHHhHhhhhHH
Q 017795          208 MAVAQVVMAFALLYYA-I--GWPGEIYVTTVLVGLSYGAHWAIVPAAASELF-------GLKSFGALYNFLTLASPAGSL  277 (366)
Q Consensus       208 ~~~~~~~~~~~~~l~~-~--~~~~~l~~~~~l~G~~~g~~~~~~~~~~se~f-------~~~~~g~~~g~~~~~~~~G~~  277 (366)
                       ..+.++.+++.+++. .  .+...+++..++.+++.+...++.+++++|..       |.+.-|..++.+....=+|..
T Consensus       306 -~~~~~~~~i~~~~~~f~~~~~~~l~~~~~~i~~~g~~~~~~l~wam~~d~vDyge~~TG~R~eGi~~s~~tF~~K~g~a  384 (467)
T COG2211         306 -LIGLLLLAVGYLLLYFTPAGSVVLIVVALIIAGVGTGIANPLPWAMVADTVDYGEWKTGVRREGIVYSGMTFFRKLGLA  384 (467)
T ss_pred             -HHHHHHHHHHHHHHHhhcCcchHHHHHHHHHHHHHhhccccccHHHhcchhhHHHHHhCCCchhhHHHHHHHHHHHHHH
Confidence             555666666555543 2  23445667778889999999999999998764       455688999999999999999


Q ss_pred             HhhhhHHHHHhhhhh
Q 017795          278 IFSGVIASGIYDYYA  292 (366)
Q Consensus       278 i~gp~i~G~l~d~~~  292 (366)
                      + +..+.|++.+..|
T Consensus       385 l-a~~~~g~~L~~~G  398 (467)
T COG2211         385 L-AGFIPGWILGAIG  398 (467)
T ss_pred             H-HHHHHHHHHHHcC
Confidence            6 8888999988776

>COG2807 CynX Cyanate permease [Inorganic ion transport and metabolism]

Probab=98.71  E-value=9.8e-07  Score=84.23  Aligned_cols=154  Identities=17%  Similarity=0.177  Sum_probs=125.9

Q ss_pred             HHHhcHHHHHHHhCCChhHH--HHHHHHHHHhhhhhhhhhhhhhhhhhccCchhHHHHHHHHHHHHHHHHHHhcchhHHH
Q 017795          154 TVIDNLGQICQSLGYADTSI--YVSMISIWNFLGRVGGGYFSEAIVRKFAYPRPVAMAVAQVVMAFALLYYAIGWPGEIY  231 (366)
Q Consensus       154 ~~~~~l~~i~~~~g~~~~~~--~~sl~~i~~~~g~~~~G~lsD~~grr~~~~R~~~~~~~~~~~~~~~~l~~~~~~~~l~  231 (366)
                      .+-..++++-+++|.+.+.+  ..+++.++..+..++..++..|+|.++.+      ..++++.++|.++=.......++
T Consensus        30 svgPLL~~Ir~~~gls~s~aGlLTtLPll~fg~~ap~a~~Lar~~g~er~l------~~~Llli~~G~~iR~~~~~~~L~  103 (395)
T COG2807          30 SVGPLLDEIRQDLGLSFSVAGLLTTLPLLAFGLFAPAAPRLARRFGEERSL------FLALLLIAAGILIRSLGGLPLLF  103 (395)
T ss_pred             hhhhhHHHHHHHhcccHHHHHHHHHHHHHHHHHHHhhhHHHHHHHhhHHHH------HHHHHHHHHHHHHHhcccHHHHH
Confidence            34456778888899988776  88999999999999999999999987655      77777777777765545667789


Q ss_pred             HHHHHHHHHhhhhhhhHHHHHHHhhCCCchhhHHHHHHhHhhhhHHHhhhhHHHHHhhhhhhhhhhhhhhccCCCCCccc
Q 017795          232 VTTVLVGLSYGAHWAIVPAAASELFGLKSFGALYNFLTLASPAGSLIFSGVIASGIYDYYAEKQAGLLWKYNGNMLPVSF  311 (366)
Q Consensus       232 ~~~~l~G~~~g~~~~~~~~~~se~f~~~~~g~~~g~~~~~~~~G~~i~gp~i~G~l~d~~~~~~~~~~~~~~~~~~~~~~  311 (366)
                      .+..+.|+|.+....+.|+.+-+.|| |+.+..+|++.+...+|+.+ ++.++-.+.+..+                   
T Consensus       104 ~gt~l~G~gIav~nVLLPslIK~~Fp-k~~~~mtglYs~sl~~~aaL-aa~lavpla~~~~-------------------  162 (395)
T COG2807         104 LGTLLAGAGIAVINVLLPSLIKRDFP-KRVGLMTGLYSTSLGAGAAL-AAALAVPLAQHSG-------------------  162 (395)
T ss_pred             HHHHHHHhhHHHHHHhhhHHHHhhcc-cchhhHHhHHHHHHHHHHHH-HhhhhhHHHHhhc-------------------
Confidence            99999999999999999999999995 67788999999998888885 7776666666553                   


Q ss_pred             CCCCCCcccCCcchHHHHHHHHHHHHHHHHHHHHH
Q 017795          312 RDQETPTCLGSICYSITCGIMAGLCIIAMVMSLIV  346 (366)
Q Consensus       312 ~~~~~~~c~g~~~~~~~f~i~~~~~~~~~~~~~~~  346 (366)
                                  +|+.+..+.+..++++.++.+.-
T Consensus       163 ------------gW~~aL~~WAl~allAl~~WlPq  185 (395)
T COG2807         163 ------------GWRGALGFWALLALLALLIWLPQ  185 (395)
T ss_pred             ------------cHHHHHHHHHHHHHHHHHHHhhh
Confidence                        39999999999988877766554

>KOG2533 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism]

Probab=98.71  E-value=1.5e-07  Score=94.96  Aligned_cols=153  Identities=14%  Similarity=0.196  Sum_probs=115.4

Q ss_pred             HHhCCChhHH--HHHHHHHHHhhhhhhhhhhhhhhhhhccCchhHHHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHh
Q 017795          164 QSLGYADTSI--YVSMISIWNFLGRVGGGYFSEAIVRKFAYPRPVAMAVAQVVMAFALLYYAIGWPGEIYVTTVLVGLSY  241 (366)
Q Consensus       164 ~~~g~~~~~~--~~sl~~i~~~~g~~~~G~lsD~~grr~~~~R~~~~~~~~~~~~~~~~l~~~~~~~~l~~~~~l~G~~~  241 (366)
                      ++.++.....  ..+++.++.++|.+.+|.+.||+.-     .......+.+...++.+-....+...+++.+++.|+.-
T Consensus        74 edl~~~~~~l~~~~t~F~v~Yii~~~p~~~L~~r~~l-----s~~l~~~~~~w~~~~~~~~~~~s~~~~ialr~llGl~e  148 (495)
T KOG2533|consen   74 EDLKLVGNQLGVLDTVFYVGYIIGQFPSGLLGDRFPL-----SKGLSVSGILWGLFGFLTAAVHSFPGLIALRFLLGLFE  148 (495)
T ss_pred             cccchhhhhhhhHHHHHHHHHHHHHhhHHHHHHhCCh-----HHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHh
Confidence            4444443333  8889999999999999999999972     22222333333333333333556678889999999999


Q ss_pred             hhhhhhHHHHHHHhhCCCchhhHHHHHHhHhhhhHHHhhhhHHHHHhhhhhhhhhhhhhhccCCCCCcccCCCCCCcccC
Q 017795          242 GAHWAIVPAAASELFGLKSFGALYNFLTLASPAGSLIFSGVIASGIYDYYAEKQAGLLWKYNGNMLPVSFRDQETPTCLG  321 (366)
Q Consensus       242 g~~~~~~~~~~se~f~~~~~g~~~g~~~~~~~~G~~i~gp~i~G~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~g  321 (366)
                      ++.|+....+++..|+.+++|...++.+....+|+.+ |++++..++...+.                          .+
T Consensus       149 s~~wP~~~~~lg~wy~~~e~g~r~~~~~a~~~~g~i~-ggliA~g~~~~~~~--------------------------~~  201 (495)
T KOG2533|consen  149 SGGWPGVVAILGNWYGKSERGLRMGIWYASASLGNIF-GGLIAYGVFKLNGS--------------------------GG  201 (495)
T ss_pred             cccchHHHHHHHhhcChhhhhhhHHHHHHhcchhhHH-HHHHHHHhhhhcCC--------------------------CC
Confidence            9999999999999999999999999999999999995 88888887654331                          01


Q ss_pred             CcchHHHHHHHHHHHHHHHHHHHHHHh
Q 017795          322 SICYSITCGIMAGLCIIAMVMSLIVVH  348 (366)
Q Consensus       322 ~~~~~~~f~i~~~~~~~~~~~~~~~~~  348 (366)
                      ..+|+|.|.+.++++++..++.+++.+
T Consensus       202 ~~gW~~~FiI~G~i~~~~gi~~f~~lp  228 (495)
T KOG2533|consen  202 LAGWRWLFIIEGVITLVLGIVVFFFLP  228 (495)
T ss_pred             cCCceeehhHHHHHHHHHHheEEEEec
Confidence            124999999999999887777766544

>TIGR00788 fbt folate/biopterin transporter

Probab=98.65  E-value=8.5e-07  Score=89.48  Aligned_cols=174  Identities=18%  Similarity=0.149  Sum_probs=110.4

Q ss_pred             HHHHHHHHHHhhhhHHHHHhcHHHHHH-HhCCChhHH--HHHHHHHHHhhhhhhhhhhhhhhhhhccCchhHHHHHHHHH
Q 017795          138 FLLLFFSLVLASGSGLTVIDNLGQICQ-SLGYADTSI--YVSMISIWNFLGRVGGGYFSEAIVRKFAYPRPVAMAVAQVV  214 (366)
Q Consensus       138 ~~ll~~~~~~~~~~~~~~~~~l~~i~~-~~g~~~~~~--~~sl~~i~~~~g~~~~G~lsD~~grr~~~~R~~~~~~~~~~  214 (366)
                      ..++...++..... ......++.+.+ ++|.+.+++  +.++..+.-.+ .+++|.++|+++. ...+|++++.++.++
T Consensus        28 ~~~~~~~y~~qGl~-~l~~~~~~~~l~~~lg~s~~~i~~~~sl~~lpw~~-K~l~g~l~D~~~i-~G~rRr~~l~~~~~l  104 (468)
T TIGR00788        28 LAIGLQVLFVKGIA-GLMRLPLSPMLTDDLGLDGARYQRLVGLSSLGWAL-KPFAGVMSDTFPL-FGYTKRWYLVLSGLL  104 (468)
T ss_pred             HHHHHHHHHHhhHH-HHhhhhhhHHHHHhcCCCHHHHHHHHHHHHHHHHH-HHHHHHHHHhcCC-CCccchHHHHHHHHH
Confidence            34444455555555 334444555554 689998876  55666655554 6669999999962 233455565666655


Q ss_pred             H-HHHHHHHHhc-chhHH-HHHHHHHHHHhhhhhhhHHHHHHHhhCCCchhh---HHHHHHhHhhhhHHHhhhhHHHHHh
Q 017795          215 M-AFALLYYAIG-WPGEI-YVTTVLVGLSYGAHWAIVPAAASELFGLKSFGA---LYNFLTLASPAGSLIFSGVIASGIY  288 (366)
Q Consensus       215 ~-~~~~~l~~~~-~~~~l-~~~~~l~G~~~g~~~~~~~~~~se~f~~~~~g~---~~g~~~~~~~~G~~i~gp~i~G~l~  288 (366)
                      . ++++..++.. +.... .+..++.+++.+.+....-++..|..+ ++.+.   ..+.......+|..+ |+.++|.+.
T Consensus       105 ~~~~~~~~l~~~~~~~~~~~~~~~l~~~~~a~~dv~~da~~~e~~~-~~~~~~~~~~s~~~~~~~~G~~v-g~~l~G~l~  182 (468)
T TIGR00788       105 GSAILYGLLPGKVSSAKVAAAFIFLAALAKALYDVLVDSLYSERIR-ESPSAGPSLVSWMWGASATGGLI-SSLLGGPLL  182 (468)
T ss_pred             HHHHHHHhcccccchHHHHHHHHHHHHHHHHHHHHhHHHHHhhhhh-cCCCcCCCeeeHHHHHHHHHHHH-HHHHHHHHH
Confidence            5 3333333322 22223 336677888888888888889999987 44333   334444445578886 999999999


Q ss_pred             hhhhhhhhhhhhhccCCCCCcccCCCCCCcccCCcchHHHHHHHHHHHHHHHHHHHHHHhh
Q 017795          289 DYYAEKQAGLLWKYNGNMLPVSFRDQETPTCLGSICYSITCGIMAGLCIIAMVMSLIVVHR  349 (366)
Q Consensus       289 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~g~~~~~~~f~i~~~~~~~~~~~~~~~~~~  349 (366)
                      +..+                                |+..|++.+++.++..+.. .+.++
T Consensus       183 ~~~~--------------------------------~~~~f~~~a~l~ll~~~~~-~~~~E  210 (468)
T TIGR00788       183 DKTL--------------------------------TRILFLITAALLLLQLFVS-NLSKE  210 (468)
T ss_pred             HhcC--------------------------------cchHHHHHHHHHHHHHHHH-Hhccc
Confidence            8877                                9999999988877764333 33344

The only functionally characterized members of the family are from protozoa and include FT1, the major folate transporter in Leishmania, and BT1, the Leishmania biopterin/folate transporter. A related protein in Trypanosoma brucei, ESAGIO, shows weak folate/biopterin transport activity.

>KOG0252 consensus Inorganic phosphate transporter [Inorganic ion transport and metabolism]

Probab=98.60  E-value=3.9e-07  Score=89.24  Aligned_cols=108  Identities=18%  Similarity=0.240  Sum_probs=85.0

Q ss_pred             HHHHHHHHHhhhhhhhhhhhhhhhhhccCchhHHHHHHHHHHHHHHHHHHh----cch----hHHHHHHHHHHHHhhhhh
Q 017795          174 YVSMISIWNFLGRVGGGYFSEAIVRKFAYPRPVAMAVAQVVMAFALLYYAI----GWP----GEIYVTTVLVGLSYGAHW  245 (366)
Q Consensus       174 ~~sl~~i~~~~g~~~~G~lsD~~grr~~~~R~~~~~~~~~~~~~~~~l~~~----~~~----~~l~~~~~l~G~~~g~~~  245 (366)
                      ......+++++|+++.|++.|++|||+.+      ...++++.++.++.+.    ..+    ..+...+++.|+|.|+-+
T Consensus        89 Vn~~A~vGti~GQl~FG~lgD~~GRK~vY------G~~liImIi~t~~~~~s~~~~~~~~~m~~L~~~R~~LGiGIGGDY  162 (538)
T KOG0252|consen   89 VNAAALVGTIFGQLFFGWLGDKFGRKKVY------GKELIIMIICSALSGLSVGTTSPLGVMMTLCFFRFLLGIGIGGDY  162 (538)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhhhcchhhh------hHHHHHHHHHHHHhccCCCCCCCcchhhHHHHHHHHhhccccCCC
Confidence            66677789999999999999999999988      5566666666554432    112    356678999999999999


Q ss_pred             hhHHHHHHHhhCCCchhhHHHHHHhHhhhhHHHhhhhHHHHHh
Q 017795          246 AIVPAAASELFGLKSFGALYNFLTLASPAGSLIFSGVIASGIY  288 (366)
Q Consensus       246 ~~~~~~~se~f~~~~~g~~~g~~~~~~~~G~~i~gp~i~G~l~  288 (366)
                      ++..++++|.--.+.||+..+.+.....+|... |.+++-.+.
T Consensus       163 PlSAtI~SE~an~~~RGa~iaavFa~Qg~Gila-G~ivt~Iv~  204 (538)
T KOG0252|consen  163 PLSATIMSESANKKTRGAFIAAVFAMQGFGILA-GGIVALIVS  204 (538)
T ss_pred             cchHHHhhhhhhhccccceeEEEEEecchhHhh-ccHHHHHHH
Confidence            999999999998899999999888887777773 665554443

>PRK09669 putative symporter YagG; Provisional

Probab=98.55  E-value=1.5e-06  Score=86.79  Aligned_cols=163  Identities=15%  Similarity=0.112  Sum_probs=100.4

Q ss_pred             hcHHH-HHHHhCCChhHH--HHHHHHHHHhhhhhhhhhhhhhhhhhccCchhHHHHHHHHHHHHHHHH-HHhcc----h-
Q 017795          157 DNLGQ-ICQSLGYADTSI--YVSMISIWNFLGRVGGGYFSEAIVRKFAYPRPVAMAVAQVVMAFALLY-YAIGW----P-  227 (366)
Q Consensus       157 ~~l~~-i~~~~g~~~~~~--~~sl~~i~~~~g~~~~G~lsD~~grr~~~~R~~~~~~~~~~~~~~~~l-~~~~~----~-  227 (366)
                      .+++. +.+.+|.+...+  ..++.-++..+..|+.|+++||...|...+|++++.. .+..+++..+ +..++    . 
T Consensus        30 ~~l~~~~t~~~gls~~~~g~i~~i~~i~dai~dp~~G~lsD~~~~r~Grrrp~il~~-~~~~~i~~~l~f~~p~~~~~~~  108 (444)
T PRK09669         30 LFLAYFYTDVFGLSAAIMGTMFLVVRVLDAVTDPLMGALVDRTRTRHGQFRPYLLWF-AIPFGVVCLLTFYTPDFGATGK  108 (444)
T ss_pred             HHHHHHHHHhcCCCHHHHHHHHHHHHHHHHcccceeeEeeecCCCCCCCcchhHHHH-HHHHHHHHHHHHhCCCCCcchH
Confidence            33444 456689988766  7788888999999999999999776666556655443 3333333332 32221    1 


Q ss_pred             -hHHHHHHHHHHHHhhhhhhhHHHHHHHhh-CCCchhhHHHHHHhHhhhhHHHhhhhHHHHHhhhhhhhhhhhhhhccCC
Q 017795          228 -GEIYVTTVLVGLSYGAHWAIVPAAASELF-GLKSFGALYNFLTLASPAGSLIFSGVIASGIYDYYAEKQAGLLWKYNGN  305 (366)
Q Consensus       228 -~~l~~~~~l~G~~~g~~~~~~~~~~se~f-~~~~~g~~~g~~~~~~~~G~~i~gp~i~G~l~d~~~~~~~~~~~~~~~~  305 (366)
                       ...++..++.+.++........++.+|+. ..++|+...+.-.....+|+.+ ++.+...+....+...          
T Consensus       109 ~~~~~~~~~l~~~~~t~~~ip~~al~~~~t~~~~eR~~l~~~r~~~~~~G~~i-~~~~~~pl~~~~~~~~----------  177 (444)
T PRK09669        109 IIYACVTYILLSLVYTAINVPYCAMPGAITNDPRERHSLQSWRFALSFIGGLI-VSVIALPLVDILGKGD----------  177 (444)
T ss_pred             HHHHHHHHHHHHHHHHhhcchHHHhHHHhcCCHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHhCCCc----------
Confidence             12223334556666666666677888987 4467888888877777777775 5555444443332100          


Q ss_pred             CCCcccCCCCCCcccCCcchHHHHHHHHHHHHHHHHHHHHH
Q 017795          306 MLPVSFRDQETPTCLGSICYSITCGIMAGLCIIAMVMSLIV  346 (366)
Q Consensus       306 ~~~~~~~~~~~~~c~g~~~~~~~f~i~~~~~~~~~~~~~~~  346 (366)
                                     ...+|+..+.+.++++.+..+++++.
T Consensus       178 ---------------~~~g~~~~~~i~~ii~~v~~~~~~~~  203 (444)
T PRK09669        178 ---------------EQKGYFYAMMVMGLLGVVLFFCCFFM  203 (444)
T ss_pred             ---------------hhhhHHHHHHHHHHHHHHHHHHHhCC
Confidence                           00138888888887777666555443

>KOG3764 consensus Vesicular amine transporter [Intracellular trafficking, secretion, and vesicular transport]

Probab=98.55  E-value=1e-06  Score=84.89  Aligned_cols=183  Identities=13%  Similarity=0.077  Sum_probs=115.7

Q ss_pred             CCCHHHHhhhhHHHHHHHHHHHhhhhHHHHHhcHHHHH-HHhCCChh-HH--HHHHHHHHHhhhhhhhhhhhhhhhhhcc
Q 017795          126 DFTLPQALMKADFLLLFFSLVLASGSGLTVIDNLGQIC-QSLGYADT-SI--YVSMISIWNFLGRVGGGYFSEAIVRKFA  201 (366)
Q Consensus       126 ~~~~~~~l~~~~~~ll~~~~~~~~~~~~~~~~~l~~i~-~~~g~~~~-~~--~~sl~~i~~~~g~~~~G~lsD~~grr~~  201 (366)
                      +.++++++++|..|+..++......+....-..++.++ +.+. ++. +.  ..-..++...+|..+.|.++||++.-  
T Consensus       260 ~~~~~~Ll~dP~I~~~agai~~~n~~lafLePtlslwm~e~m~-~p~w~~G~~fLp~~~~y~ig~~lfg~la~k~~~~--  336 (464)
T KOG3764|consen  260 GTPMWSLLMDPYILLIAGAITFSNSSLAFLEPTLSLWMLETMF-TPGWEVGLAFLPASLSYAIGTNLFGKLADKYPHL--  336 (464)
T ss_pred             CccHHHHHhCchHhhhhcchhhccchHHHhCcccHHHHHHhcc-CCCcceeeeecccccchhccCchHHHHHHhcCch--
Confidence            34578888999888776665444444444555566644 3344 322 22  22234556778999999999999731  


Q ss_pred             CchhHHHHHHHHHHHHHHHHHH-hcchhHHHHHHHHHHHHhhhhhhhHHHHHHHhhCCC------chhhHHHHHHhHhhh
Q 017795          202 YPRPVAMAVAQVVMAFALLYYA-IGWPGEIYVTTVLVGLSYGAHWAIVPAAASELFGLK------SFGALYNFLTLASPA  274 (366)
Q Consensus       202 ~~R~~~~~~~~~~~~~~~~l~~-~~~~~~l~~~~~l~G~~~g~~~~~~~~~~se~f~~~------~~g~~~g~~~~~~~~  274 (366)
                        |-...+.+++..++...... ..+...+++-.+..+++.+...+.+..+...+...+      .+|..|++...+..+
T Consensus       337 --~wl~~~~gl~~~G~~~~~iP~~~~~~~L~vp~~~l~~~i~~~dasl~P~l~~lvd~rh~s~~~vYGsVyaIad~a~sl  414 (464)
T KOG3764|consen  337 --RWLLSLGGLATVGVSSGPIPFATSIAQLWVPNFGLGFGIGLADASLIPTLGYLVDPRHVSGFNVYGSVYAIADAAFSL  414 (464)
T ss_pred             --hHHHHHHHHHHHHHHhchhHhhhhHHHHhhhhHHHHHHHHHHHHHHhhhhHHhcchhhccccceeeeHHHHHHHHHHH
Confidence              21122333333333222222 233344555555555665555555554555444433      589999999999999


Q ss_pred             hHHHhhhhHHHHHhhhhhhhhhhhhhhccCCCCCcccCCCCCCcccCCcchHHHHHHHHHHHHHHHHHHHHH
Q 017795          275 GSLIFSGVIASGIYDYYAEKQAGLLWKYNGNMLPVSFRDQETPTCLGSICYSITCGIMAGLCIIAMVMSLIV  346 (366)
Q Consensus       275 G~~i~gp~i~G~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~g~~~~~~~f~i~~~~~~~~~~~~~~~  346 (366)
                      |.++ ||.++|.+++..|                                |+|...+.+...++-+-+...+
T Consensus       415 a~a~-GP~~gg~iv~~iG--------------------------------F~wl~~iig~~n~iyapvl~ll  453 (464)
T KOG3764|consen  415 AYAI-GPTFGGSLVEAIG--------------------------------FEWLMTIIGILNLIYAPVLLLL  453 (464)
T ss_pred             hhhc-cccccchheeehh--------------------------------HHHHHHHHHHHHHHHHHHHHHH
Confidence            9996 9999999999888                                9999988888887766554443

>KOG0252 consensus Inorganic phosphate transporter [Inorganic ion transport and metabolism]

Probab=98.54  E-value=1.9e-07  Score=91.39  Aligned_cols=176  Identities=14%  Similarity=0.067  Sum_probs=116.5

Q ss_pred             HHHHHhhhhHHHHHhcHHHHHHHhCCChhHH----------HHHHHHHHHhh-hhhhhhhhhhhhhhhccCchhHHHHHH
Q 017795          143 FSLVLASGSGLTVIDNLGQICQSLGYADTSI----------YVSMISIWNFL-GRVGGGYFSEAIVRKFAYPRPVAMAVA  211 (366)
Q Consensus       143 ~~~~~~~~~~~~~~~~l~~i~~~~g~~~~~~----------~~sl~~i~~~~-g~~~~G~lsD~~grr~~~~R~~~~~~~  211 (366)
                      ...|..-.+.+...-+...+.+..|+.+...          ...+...+..+ |-.+..+++|++|||+..      ..+
T Consensus       311 ~~WFllDiafy~~nL~~s~I~~~ig~~~~~~~~~~~~~vA~~~~iia~~~~vPGyw~tv~~id~iGRk~iq------~~G  384 (538)
T KOG0252|consen  311 GTWFLLDIAFYGQNLFQSVIFSAIGVIPSANTYHELFKVAEGNLIIAVCSTVPGYWFTVYFIDIIGRKYIQ------LMG  384 (538)
T ss_pred             HHHHhhhhhhhccccHHHHHHHhhccCCCcchHHHHHHHHHHHHHHHHHccCCceeEEEEEeehhhhHHHH------Hhh
Confidence            3344444455555666777888888754321          23333444444 777888999999998766      777


Q ss_pred             HHHHHHHHHHHHhcch------hHHHHHHHHHHHHhhhhhhhHHHHHHHhhCCCchhhHHHHHHhHhhhhHHHhhhhHHH
Q 017795          212 QVVMAFALLYYAIGWP------GEIYVTTVLVGLSYGAHWAIVPAAASELFGLKSFGALYNFLTLASPAGSLIFSGVIAS  285 (366)
Q Consensus       212 ~~~~~~~~~l~~~~~~------~~l~~~~~l~G~~~g~~~~~~~~~~se~f~~~~~g~~~g~~~~~~~~G~~i~gp~i~G  285 (366)
                      ++++.+.++.++....      ..+....+..-++.-+..+....+.+|.||.+.||+.+|+....+-.|+.+ |...++
T Consensus       385 F~~~~i~~~~~~~~y~~~~~~~Gf~v~y~l~~ff~NFGPn~ttfivpaE~FParvR~t~hGIsAA~GK~GAiv-g~~~F~  463 (538)
T KOG0252|consen  385 FFIMTIFFFVIAGPYNQLENTIGFVVLYSLTFFFGNFGPNATTFIVPAEIFPARVRSTCHGISAASGKAGAIV-GAFGFL  463 (538)
T ss_pred             HHHHHHHHHHHcCCcccccccCceeehHHHHHHHHhcCCCceeEEeehhhchHHHhhhhhhHHHHhccchHHH-HHHHhh
Confidence            7777777666653322      112222222233333445556667899999999999999999999999996 877666


Q ss_pred             HHhhhhhhhhhhhhhhccCCCCCcccCCCCCCcccCCcchHHHHHHHHHHHHHHHHHHHHHHhhcHHH
Q 017795          286 GIYDYYAEKQAGLLWKYNGNMLPVSFRDQETPTCLGSICYSITCGIMAGLCIIAMVMSLIVVHRTKSV  353 (366)
Q Consensus       286 ~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~g~~~~~~~f~i~~~~~~~~~~~~~~~~~~~r~~  353 (366)
                      ++.++.-       +.+.                    .++++|++.++++.++.+..+++. +++++
T Consensus       464 ~~t~~~y-------p~~~--------------------g~~~v~~i~~~~~~~gi~~T~l~p-Etk~~  503 (538)
T KOG0252|consen  464 YLTDHNY-------PPNI--------------------GVRNVFIILAGCMLLGILFTLLIP-ETKGK  503 (538)
T ss_pred             HhhhccC-------Cccc--------------------cchHHHHHHHHHHHHhHheeEEee-ccccc
Confidence            6666321       1111                    289999999999999888887766 65543

>COG0738 FucP Fucose permease [Carbohydrate transport and metabolism]

Probab=98.48  E-value=5.3e-06  Score=80.34  Aligned_cols=130  Identities=9%  Similarity=-0.022  Sum_probs=107.0

Q ss_pred             HHHhcHHHHHHHhCCChhHH--HHHHHHHHHhhhhhhhhhhhhhhhhhccCchhHHHHHHHHHHHHHHHHHH----hcch
Q 017795          154 TVIDNLGQICQSLGYADTSI--YVSMISIWNFLGRVGGGYFSEAIVRKFAYPRPVAMAVAQVVMAFALLYYA----IGWP  227 (366)
Q Consensus       154 ~~~~~l~~i~~~~g~~~~~~--~~sl~~i~~~~g~~~~G~lsD~~grr~~~~R~~~~~~~~~~~~~~~~l~~----~~~~  227 (366)
                      .....+|++.+.++.+..++  .-..+..+.+++.+-.|++.+|+|.|..+      ..++.+++++..++.    ..+.
T Consensus        31 l~diLip~l~~~f~ls~~~a~liqfaff~gYf~~~lpa~~~~kk~gyk~gi------~lgL~l~avg~~lF~pAa~~~~y  104 (422)
T COG0738          31 LNDILIPHLKEVFDLTYFEASLIQFAFFGGYFIMSLPAGLLIKKLGYKAGI------VLGLLLYAVGAALFWPAASSKSY  104 (422)
T ss_pred             cchhhHHHHHHHhCccHHHHHHHHHHHHHHHHHHhccHHHHHHHhhhHHHH------HHHHHHHHHHHHHHhhhhhhhhH
Confidence            34456788888898887766  45555566778888999999999999887      889999999988874    2233


Q ss_pred             hHHHHHHHHHHHHhhhhhhhHHHHHHHhhCCCchhhHHHHHHhHhhhhHHHhhhhHHHHHhhh
Q 017795          228 GEIYVTTVLVGLSYGAHWAIVPAAASELFGLKSFGALYNFLTLASPAGSLIFSGVIASGIYDY  290 (366)
Q Consensus       228 ~~l~~~~~l~G~~~g~~~~~~~~~~se~f~~~~~g~~~g~~~~~~~~G~~i~gp~i~G~l~d~  290 (366)
                      ..++.+.++.|.|.|..-+...++++.+.+++.-....++.....++|+.+ +|.+++++.++
T Consensus       105 ~~FL~~lFila~Gi~~LetaaNp~v~~lg~~~~a~~rlnl~q~fn~lGa~~-gp~~g~~lils  166 (422)
T COG0738         105 GFFLVALFILASGIGLLETAANPYVTLLGKPESAAFRLNLAQAFNGLGAIL-GPLLGSSLILS  166 (422)
T ss_pred             HHHHHHHHHHHhhhHHHHhccchHHHHhCCchhHHHHHHHHHHhhhhHHHH-HHHHHHHHHHh
Confidence            456677788899999888888999999998888888999999999999997 99999999884

>TIGR00924 yjdL_sub1_fam amino acid/peptide transporter (Peptide:H+ symporter), bacterial

Probab=98.47  E-value=2.6e-05  Score=78.85  Aligned_cols=143  Identities=15%  Similarity=0.124  Sum_probs=101.1

Q ss_pred             HHHHHHHHHhhhhhhhhhhhhhhhhhcc-CchhHHHHHHHHHHHHHHHHHHh----------cchhHHHHHHHHHHHHhh
Q 017795          174 YVSMISIWNFLGRVGGGYFSEAIVRKFA-YPRPVAMAVAQVVMAFALLYYAI----------GWPGEIYVTTVLVGLSYG  242 (366)
Q Consensus       174 ~~sl~~i~~~~g~~~~G~lsD~~grr~~-~~R~~~~~~~~~~~~~~~~l~~~----------~~~~~l~~~~~l~G~~~g  242 (366)
                      +.++-.+.-.+..++..++-.++.||.. .....-+.+++++.+++++..+.          .+...+.+..++.++|-.
T Consensus       317 ~~~~n~~~iil~~p~~~~~~~~l~~~~~~~~~~~k~~~G~~l~~~~~~~~~~~~~~~~~~~~~s~~~~i~~~~~~~~ge~  396 (475)
T TIGR00924       317 FQSLNPFWVVVGSPVLAMIWTRLGRKGKDPTTPLKFTLGMLFCGASFLTFAASIWFADAGGLTSPWFMVLIYLFQTLGEL  396 (475)
T ss_pred             HHhhhHHHHHHHHHHHHHHHHHHHhCCCCCCcHHHHHHHHHHHHHHHHHHHHHHhhcCCCCccCHHHHHHHHHHHHHHHH
Confidence            5555566666666655544445555422 12222246677777777665442          245567788889999999


Q ss_pred             hhhhhHHHHHHHhhCCCchhhHHHHHHhHhhhhHHHhhhhHHHHHhhhhhhhhhhhhhhccCCCCCcccCCCCCCcccCC
Q 017795          243 AHWAIVPAAASELFGLKSFGALYNFLTLASPAGSLIFSGVIASGIYDYYAEKQAGLLWKYNGNMLPVSFRDQETPTCLGS  322 (366)
Q Consensus       243 ~~~~~~~~~~se~f~~~~~g~~~g~~~~~~~~G~~i~gp~i~G~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~g~  322 (366)
                      ...+...+.+++..|++.+|+.+|+..+...+|..+ ++.+.+...+..+                              
T Consensus       397 ~~~p~~~~~~~~~aP~~~~g~~~g~~~l~~~~g~~l-~~~~~~~~~~~~~------------------------------  445 (475)
T TIGR00924       397 MISPLGLSWWTKIAPQRLMGQMLGMWFLAQAMGSLL-GGYLATFGAVPQG------------------------------  445 (475)
T ss_pred             HHhHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHhcccc------------------------------
Confidence            999999999999999999999999999999999996 8888887766554                              


Q ss_pred             cchHHHHHHHHHHHHHHHHHHHHHHhh
Q 017795          323 ICYSITCGIMAGLCIIAMVMSLIVVHR  349 (366)
Q Consensus       323 ~~~~~~f~i~~~~~~~~~~~~~~~~~~  349 (366)
                        |...|...++++++..++.+++.++
T Consensus       446 --~~~~~~~~~~~~~~~~~~~~~~~~~  470 (475)
T TIGR00924       446 --VTGVFGKIGLVTLLVGVVMALMVPW  470 (475)
T ss_pred             --hhhHHHHHHHHHHHHHHHHHHHHHH
Confidence              7777877777777666665555443

The model describes proton-dependent oligopeptide transporters in bacteria. This model is restricted in its range in recognizing bacterial proton-dependent oligopeptide transporters, although they are found in yeast, plants and animals. They function by proton symport in a 1:1 stoichiometry, which is variable in different species. All of them are predicted to contain 12 transmembrane domains, for which limited experimental evidence exists.

>KOG0569 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism]

Probab=98.43  E-value=3.5e-06  Score=84.54  Aligned_cols=101  Identities=23%  Similarity=0.307  Sum_probs=81.3

Q ss_pred             HHHHHHHHHhhhhhhhhhhhhhhhhhccCchhHHHHHHHHHHHHHHHH--HH--hcchhHHHHHHHHHHHHhhhhhhhHH
Q 017795          174 YVSMISIWNFLGRVGGGYFSEAIVRKFAYPRPVAMAVAQVVMAFALLY--YA--IGWPGEIYVTTVLVGLSYGAHWAIVP  249 (366)
Q Consensus       174 ~~sl~~i~~~~g~~~~G~lsD~~grr~~~~R~~~~~~~~~~~~~~~~l--~~--~~~~~~l~~~~~l~G~~~g~~~~~~~  249 (366)
                      .++.+.+++++|....|+++|++|||..+      .+..++..++.++  +.  ......+.+++++.|+..|......+
T Consensus        65 ~vs~f~iG~~~Gs~~~~~la~~~GRK~~l------~~~~~l~~~~~~~~~~s~~~~~~e~li~GR~i~Gl~~gl~~~~~p  138 (485)
T KOG0569|consen   65 IVSIFFIGGMIGSFSSGLLADRFGRKNAL------LLSNLLAVLAALLMGLSKSAPSFEMLILGRLIVGLACGLSTGLVP  138 (485)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhhcchHHH------HHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhHHHHHHHH
Confidence            79999999999999999999999999655      3333333332222  22  34556788999999999999999999


Q ss_pred             HHHHHhhCCCchhhHHHHHHhHhhhhHHHhhh
Q 017795          250 AAASELFGLKSFGALYNFLTLASPAGSLIFSG  281 (366)
Q Consensus       250 ~~~se~f~~~~~g~~~g~~~~~~~~G~~i~gp  281 (366)
                      -++.|.-|.+.||..-.+..++..+|..+ |.
T Consensus       139 myl~E~sP~~~RG~~g~~~~~~~~~g~ll-~~  169 (485)
T KOG0569|consen  139 MYLTEISPKNLRGALGTLLQIGVVIGILL-GQ  169 (485)
T ss_pred             HHHhhcChhhhccHHHHHHHHHHHHHHHH-HH
Confidence            99999999999999998888888888885 53

>TIGR00889 2A0110 nucleoside transporter

Probab=98.42  E-value=4.8e-06  Score=82.69  Aligned_cols=121  Identities=16%  Similarity=0.126  Sum_probs=72.6

Q ss_pred             HHhcHHHHH-HHhCCChhHH--HHHHHHHHHhhhhhhhhhhhhhhhhhccCchhHHHHHHHHHHHHHHHHHH-hcchhHH
Q 017795          155 VIDNLGQIC-QSLGYADTSI--YVSMISIWNFLGRVGGGYFSEAIVRKFAYPRPVAMAVAQVVMAFALLYYA-IGWPGEI  230 (366)
Q Consensus       155 ~~~~l~~i~-~~~g~~~~~~--~~sl~~i~~~~g~~~~G~lsD~~grr~~~~R~~~~~~~~~~~~~~~~l~~-~~~~~~l  230 (366)
                      ....++.+. +++|++..++  +.+...++..++.+.+|+++||+|||+..     +.++.++..++..+.. ..+...+
T Consensus        21 ~~~~l~~~l~~~~g~s~~~iGl~~a~~~~~~~i~~~~~g~l~dr~g~~r~~-----~~~~~~~~~~~~~~~~~~~~~~~~   95 (418)
T TIGR00889        21 WLVTLGSYMSKTLHFSGAEIGWVYSSTGIAAILMPILVGIIADKWLSAQKV-----YAVCHFAGALLLFFAAQVTTPAGM   95 (418)
T ss_pred             HHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccHHH-----HHHHHHHHHHHHHHHHHhcCHHHH
Confidence            334444544 5589998776  78999999999999999999999763321     2344444444444433 3445556


Q ss_pred             HHHHHHHHHHhhhhhhhHHHHHHHh--------hCCCchhhHHHHHHhHhhhhHHHhhhhHHHHH
Q 017795          231 YVTTVLVGLSYGAHWAIVPAAASEL--------FGLKSFGALYNFLTLASPAGSLIFSGVIASGI  287 (366)
Q Consensus       231 ~~~~~l~G~~~g~~~~~~~~~~se~--------f~~~~~g~~~g~~~~~~~~G~~i~gp~i~G~l  287 (366)
                      ++..++.|++.+...++.-++....        .....+.+.+|      .+|..+ ||.++|.+
T Consensus        96 ~~~~~l~~~~~~~~~~~~~~l~~~~~~~~g~~~~~~~~~~r~~G------~lG~~i-g~~l~g~l  153 (418)
T TIGR00889        96 FPVLLANSLAYMPTIALTNSISYANLPQAGLDVVTDFPPIRVMG------TIGFIA-AMWAVSLL  153 (418)
T ss_pred             HHHHHHHHHHHccHHHHHHHHHHHHHhhcCCCchhcCCCeeeeh------hHHHHH-HHHHHHHh
Confidence            6666777777665555444432222        11112333333      356664 78888876

This family of proteins transports nucleosides at a high affinity. The transport mechanism is driven by proton motive force. This family includes nucleoside permease NupG and xanthosine permease from E.Coli.

>PRK15403 multidrug efflux system protein MdtM; Provisional

Probab=98.41  E-value=3.1e-05  Score=76.75  Aligned_cols=158  Identities=12%  Similarity=-0.025  Sum_probs=88.4

Q ss_pred             HHHHhhhhHHHHHHHHHHHhhhhHHHHHhcHHHHHHH-hCCChhHH--HHHHHHHHHhhhhhhhhhhh-hhhhhhccCch
Q 017795          129 LPQALMKADFLLLFFSLVLASGSGLTVIDNLGQICQS-LGYADTSI--YVSMISIWNFLGRVGGGYFS-EAIVRKFAYPR  204 (366)
Q Consensus       129 ~~~~l~~~~~~ll~~~~~~~~~~~~~~~~~l~~i~~~-~g~~~~~~--~~sl~~i~~~~g~~~~G~ls-D~~grr~~~~R  204 (366)
                      +++.++++.+|...+.+++.......+....|.+.++ +|++..+.  .......+..++..+.+.+. |+.++|.....
T Consensus       211 ~~~ll~~~~~~~~~l~~~~~~~~~~~~~~~~P~~l~~~~g~s~~~~gl~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~  290 (413)
T PRK15403        211 FRNVFRNRLFLTGAATLSLSYIPMMSWVAVSPVILIDAGGMTTSQFAWTQVPVFGAVIVANAIVARFVKDPTEPRFIWRA  290 (413)
T ss_pred             HHHHHcCHHHHHHHHHHHHHHHHHHHHHHhChHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHhccCCchhHHHHH
Confidence            4567889999988777777666666677778888876 48887765  22233444455555555433 33322211000


Q ss_pred             hHHHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHhhhhhhhHHHHHHHhhC-CCchhhHHHHHHhHhhhhHHHhhhhH
Q 017795          205 PVAMAVAQVVMAFALLYYAIGWPGEIYVTTVLVGLSYGAHWAIVPAAASELFG-LKSFGALYNFLTLASPAGSLIFSGVI  283 (366)
Q Consensus       205 ~~~~~~~~~~~~~~~~l~~~~~~~~l~~~~~l~G~~~g~~~~~~~~~~se~f~-~~~~g~~~g~~~~~~~~G~~i~gp~i  283 (366)
                      .....++.+++.++... ...+....++..+++++|.+...+......  +.+ ....|++.++.+.....+..+ ++.+
T Consensus       291 ~~~~~ig~~l~~~~~~~-~~~~~~~~~~~~~l~~~G~~~~~p~~~~~a--l~~~~~~~G~a~a~~~~~~~~~~~~-~~~~  366 (413)
T PRK15403        291 VPIQLVGLALLIVGNLL-WPHVWLWSVLGTSLYAFGIGLIFPTLFRFT--LFSNNLPKGTVSASLNMVILMVMAV-SVEI  366 (413)
T ss_pred             HHHHHHHHHHHHHHHHH-ccccHHHHHHHHHHHHHHHHHHhHHHHHHH--hccCCCCCcHHHHHHHHHHHHHHHH-HHHH
Confidence            00111122222111111 111112245666777888777665555322  222 224788888888887777775 8888


Q ss_pred             HHHHhhh
Q 017795          284 ASGIYDY  290 (366)
Q Consensus       284 ~G~l~d~  290 (366)
                      .|++++.
T Consensus       367 ~g~~~~~  373 (413)
T PRK15403        367 GRWLWFN  373 (413)
T ss_pred             HHHHHHc
Confidence            8888776

>TIGR00926 2A1704 Peptide:H+ symporter (also transports b-lactam antibiotics, the antitumor agent, bestatin, and various protease inhibitors)

Probab=98.41  E-value=6.6e-06  Score=86.05  Aligned_cols=150  Identities=20%  Similarity=0.301  Sum_probs=109.7

Q ss_pred             HHHhCCChhHH--HHHHHHHHHhhhhhhhhhhhhhh-hhhccCchhHHHHHHHHHHHHHHHHHHhcc---------hhHH
Q 017795          163 CQSLGYADTSI--YVSMISIWNFLGRVGGGYFSEAI-VRKFAYPRPVAMAVAQVVMAFALLYYAIGW---------PGEI  230 (366)
Q Consensus       163 ~~~~g~~~~~~--~~sl~~i~~~~g~~~~G~lsD~~-grr~~~~R~~~~~~~~~~~~~~~~l~~~~~---------~~~l  230 (366)
                      ...+|++.+.+  ....+.....+..+++|+++|++ |+++.+      ..+.++..+|+.+++...         ....
T Consensus        15 ~~~lg~~~~~A~~i~~~f~~l~yl~pilGg~iAD~~lG~~~tI------l~~~ii~~lG~~llai~a~~~~~~~~~~~~~   88 (654)
T TIGR00926        15 LNFLGFSESTSTVLFHTFTYLCYLTPLIGAIIADGWLGKFKTI------LYLSIVYVVGHALLSFGAIPSSGHPLHDLLD   88 (654)
T ss_pred             HHHcCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHH------HHHHHHHHHHHHHHHhccCcccccchHHHHH
Confidence            44578877655  55666666677888999999996 665444      666677777777765321         1235


Q ss_pred             HHHHHHHHHHhhhhhhhHHHHHHHhhCCC---chhhHHHHHHhHhhhhHHHhhhhHHHHHhhhhhhhhhhhhhhccCCCC
Q 017795          231 YVTTVLVGLSYGAHWAIVPAAASELFGLK---SFGALYNFLTLASPAGSLIFSGVIASGIYDYYAEKQAGLLWKYNGNML  307 (366)
Q Consensus       231 ~~~~~l~G~~~g~~~~~~~~~~se~f~~~---~~g~~~g~~~~~~~~G~~i~gp~i~G~l~d~~~~~~~~~~~~~~~~~~  307 (366)
                      +++..+..+|.|+.-+...+...|.|..+   .+-..+++...+.++|+++ ++++.+++.+..+               
T Consensus        89 l~gLaLia~G~GgiKp~vsaf~gdqf~~~~~~~~~s~F~~fY~~iNiGSli-s~~i~~~l~~~~~---------------  152 (654)
T TIGR00926        89 LLGLALIALGTGGIKPCVSAFGGDQFEERQLSLRSRFFSFFYFAINAGSLI-STIITPILRGDVG---------------  152 (654)
T ss_pred             HHHHHHHHhhccccccCchhhhHhhcCccchhHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHhhc---------------
Confidence            66777888899998899999999999754   3778899999999999996 8999988865432               


Q ss_pred             CcccCCCCCCcccC-CcchHHHHHHHHHHHHHHHHHHHH
Q 017795          308 PVSFRDQETPTCLG-SICYSITCGIMAGLCIIAMVMSLI  345 (366)
Q Consensus       308 ~~~~~~~~~~~c~g-~~~~~~~f~i~~~~~~~~~~~~~~  345 (366)
                                 |.| ..||..+|.+.+++.+++.++...
T Consensus       153 -----------~fg~~~~~~~aF~i~~i~m~ia~lvf~~  180 (654)
T TIGR00926       153 -----------CFGCQDCYPLAFGVPAILMILALIVFMA  180 (654)
T ss_pred             -----------ccccCcchHHHHHHHHHHHHHHHHHHHH
Confidence                       222 235999999988888777665544

>PF00083 Sugar_tr: Sugar (and other) transporter; InterPro: IPR005828 Recent genome-sequencing data and a wealth of biochemical and molecular genetic investigations have revealed the occurrence of dozens of families of primary and secondary transporters

Probab=98.38  E-value=4e-10  Score=112.24  Aligned_cols=161  Identities=16%  Similarity=0.171  Sum_probs=106.3

Q ss_pred             HHhcHHHHHHHhCCChhHHHHHHHHHHHhhhhhhhhhhhhhhhhhccCchhHHHHHHHHHHHHHHHHHH------hcc--
Q 017795          155 VIDNLGQICQSLGYADTSIYVSMISIWNFLGRVGGGYFSEAIVRKFAYPRPVAMAVAQVVMAFALLYYA------IGW--  226 (366)
Q Consensus       155 ~~~~l~~i~~~~g~~~~~~~~sl~~i~~~~g~~~~G~lsD~~grr~~~~R~~~~~~~~~~~~~~~~l~~------~~~--  226 (366)
                      ...+.+.+.+..|.+.......+..+...++.+++.++.||+|||+..      ..+..+++++.+.+.      ...  
T Consensus       272 ~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~GRr~~~------i~~~~~~~~~~~~~~~~~~~~~~~~~  345 (451)
T PF00083_consen  272 IFYYSPSIFENAGISNSFLATLILGLVNFLGTLLAIFLIDRFGRRKLL------IIGLLLMAICSLILGIIFFLGVSSSS  345 (451)
T ss_pred             cccccccccccccccccccccccccccccccccccccccccccccccc------cccccccccccccccccccccccccc
Confidence            344567777778877663344455567777888888999999999766      444444444333321      111  


Q ss_pred             --hhHHHHHHHHHHHHhh-hhhhhHHHHHHHhhCCCchhhHHHHHHhHhhhhHHHhhhhHHHHHhhhhhhhhhhhhhhcc
Q 017795          227 --PGEIYVTTVLVGLSYG-AHWAIVPAAASELFGLKSFGALYNFLTLASPAGSLIFSGVIASGIYDYYAEKQAGLLWKYN  303 (366)
Q Consensus       227 --~~~l~~~~~l~G~~~g-~~~~~~~~~~se~f~~~~~g~~~g~~~~~~~~G~~i~gp~i~G~l~d~~~~~~~~~~~~~~  303 (366)
                        ....++...+...+++ +..++.+.+++|+||++.|+++.++....+.+++++ +|.+...+.+..+           
T Consensus       346 ~~~~~~i~~~~l~~~~~~~g~~~~~~~~~~ElfPt~~R~~~~~~~~~~~~i~~~i-~~~~~~~~~~~~~-----------  413 (451)
T PF00083_consen  346 WWSILSIVFLALFFAFFSLGWGPLPWIYTAELFPTKVRSTGIGLSYAVGRIGGFI-IPFLFPYLFNNLG-----------  413 (451)
T ss_pred             ccccccceeeeeccccccccccccccccccccccccccccccccccccccccccc-ccccccccccccc-----------
Confidence              1112222222222333 334555678899999999999999999999999986 7888777776554           


Q ss_pred             CCCCCcccCCCCCCcccCCcchHHHHHHHHHHHHHHHHHHHHHHhhcHHHH
Q 017795          304 GNMLPVSFRDQETPTCLGSICYSITCGIMAGLCIIAMVMSLIVVHRTKSVY  354 (366)
Q Consensus       304 ~~~~~~~~~~~~~~~c~g~~~~~~~f~i~~~~~~~~~~~~~~~~~~~r~~~  354 (366)
                                           ....|++.+++++++.+...++.++||.+.
T Consensus       414 ---------------------~~~~~~i~~~~~~i~~i~~~~~lpET~g~~  443 (451)
T PF00083_consen  414 ---------------------GWGVFLIFAGVCLIAIIFVYFFLPETKGKT  443 (451)
T ss_pred             ---------------------ccccchhhHHHHHHHHhheeEEEeeCCCCC
Confidence                                 244667777777887877777888887644

Two such families have been found to occur ubiquitously in all classifications of living organisms. These are the ATP-binding cassette (ABC) superfamily and the major facilitator superfamily (MFS), also called the uniporter-symporter-antiporter family. While ABC family permeases are in general multicomponent primary active transporters, capable of transporting both small molecules and macromolecules in response to ATP hydrolysis the MFS transporters are single-polypeptide secondary carriers capable only of transporting small solutes in response to chemiosmotic ion gradients. Although well over 100 families of transporters have now been recognised and classified, the ABC superfamily and MFS account for nearly half of the solute transporters encoded within the genomes of microorganisms. They are also prevalent in higher organisms. The importance of these two families of transport systems to living organisms can therefore not be overestimated []. The MFS was originally believed to function primarily in the uptake of sugars but subsequent studies revealed that drug efflux systems, Krebs cycle metabolites, organophosphate:phosphate exchangers, oligosaccharide:H1 symport permeases, and bacterial aromatic acid permeases were all members of the MFS. These observations led to the probability that the MFS is far more widespread in nature and far more diverse in function than had been thought previously. 17 subgroups of the MFS have been identified []. Evidence suggests that the MFS permeases arose by a tandem intragenic duplication event in the early prokaryotes. This event generated a 2-transmembrane-spanner (TMS) protein topology from a primordial 6-TMS unit. Surprisingly, all currently recognised MFS permeases retain the two six-TMS units within a single polypeptide chain, although in 3 of the 17 MFS families, an additional two TMSs are found []. Moreover, the well-conserved MFS specific motif between TMS2 and TMS3 and the related but less well conserved motif between TMS8 and TMS9 [] prove to be a characteristic of virtually all of the more than 300 MFS proteins identified.; GO: 0022857 transmembrane transporter activity, 0055085 transmembrane transport, 0016021 integral to membrane

>PF01306 LacY_symp: LacY proton/sugar symporter; InterPro: IPR022814 In bacteria there are a number of families of transport proteins, including symporters and antiporters, that mediate the intake of a variety of sugars with the concomitant uptake of hydrogen ions (proton symporters) []

Probab=98.36  E-value=4.5e-06  Score=82.18  Aligned_cols=153  Identities=14%  Similarity=0.123  Sum_probs=84.8

Q ss_pred             hhhhHHHHHHHHHHHhhhhHHHHHhcHHHHHHH-hCCChhHH--HHHHHHHHHhhhhhhhhhhhhhhhhhccCchhHHHH
Q 017795          133 LMKADFLLLFFSLVLASGSGLTVIDNLGQICQS-LGYADTSI--YVSMISIWNFLGRVGGGYFSEAIVRKFAYPRPVAMA  209 (366)
Q Consensus       133 l~~~~~~ll~~~~~~~~~~~~~~~~~l~~i~~~-~g~~~~~~--~~sl~~i~~~~g~~~~G~lsD~~grr~~~~R~~~~~  209 (366)
                      .|++.+|.+...+++..+.........+..+++ .|++.+++  ..+..++...+.+|+.|.++||++.|+..   ++..
T Consensus         4 ~~~~~~~~~s~~~f~~Ff~~gi~~pF~~iWL~~~~GLs~~~iG~i~s~~~~~~l~~qp~~G~i~Dklg~kK~L---l~~i   80 (412)
T PF01306_consen    4 FKNKNYWWLSLFYFFYFFIWGIFLPFFPIWLTQVAGLSGTEIGIIFSAGSLFALLAQPVYGFISDKLGLKKHL---LWFI   80 (412)
T ss_dssp             CHSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHTHHHHHHHHHHCTTCSHH---HHHH
T ss_pred             ccCchHHHHHHHHHHHHHHHHHHHHHHHHHHccccCCCHHHHHHHHHHHHHHHHHHHHhHHHhcchhhhhHHH---HHHH
Confidence            367788877766666666655566667777765 89998887  88888899999999999999999976543   1222


Q ss_pred             HHHHHHHHHHHHHHh-----cchh-HHHHHHHHHHHHhhhhhhhHHHHHHHhhCCCchhhHHHHHHhHhhhhHHHhhhhH
Q 017795          210 VAQVVMAFALLYYAI-----GWPG-EIYVTTVLVGLSYGAHWAIVPAAASELFGLKSFGALYNFLTLASPAGSLIFSGVI  283 (366)
Q Consensus       210 ~~~~~~~~~~~l~~~-----~~~~-~l~~~~~l~G~~~g~~~~~~~~~~se~f~~~~~g~~~g~~~~~~~~G~~i~gp~i  283 (366)
                      ....+....++.+..     .+.. ..+++.+..|+++.+..++.=+++.. +. +..+--||=.=+.+.+|-++ +..+
T Consensus        81 ~~l~~l~~pff~~v~~pll~~n~~lg~iig~i~l~~~f~~~~~~~Ea~~er-~s-r~~~feYG~~R~wGSig~ai-~s~~  157 (412)
T PF01306_consen   81 AILLLLFGPFFIYVFGPLLQSNFWLGAIIGGIYLGLVFNAGVPLSEAYAER-VS-RRNGFEYGRARMWGSIGFAI-ASLL  157 (412)
T ss_dssp             HHHHHTCHHHHHHTHHHHHHTT-HHHHHHTTTTTTTTTTTHHHHHHHHHHH-HH-HHHSS-HHHHHHHHHHHHHH-HHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccchHHHHHHHH-HH-HHhcCCcchHHHHhhHHHHH-HHHH
Confidence            222222222222211     1111 12222233344444444444333322 21 23344455555555666665 6677


Q ss_pred             HHHHhhhh
Q 017795          284 ASGIYDYY  291 (366)
Q Consensus       284 ~G~l~d~~  291 (366)
                      +|.+++..
T Consensus       158 ~G~L~~i~  165 (412)
T PF01306_consen  158 AGILFNIN  165 (412)
T ss_dssp             HHHHHHHH
T ss_pred             hheeeeeC
Confidence            88888754

The lacY family of Escherichia coli and Klebsiella pneumoniae are proton/beta-galactoside symporters, which, like most sugar transporters, are integral membrane proteins with 12 predicted transmembrane (TM) regions. Also similar to the lacY family are the rafinose (rafB) and sucrose (cscB) permeases from E. coli []. This entry also includes bacterial phenylproprionate permease.; PDB: 1PV7_B 1PV6_A 2Y5Y_B 2CFQ_A 2V8N_B 2CFP_A.

>PF13347 MFS_2: MFS/sugar transport protein

Probab=98.34  E-value=2.7e-06  Score=84.56  Aligned_cols=160  Identities=17%  Similarity=0.217  Sum_probs=110.6

Q ss_pred             HHHHHHHhCCChhHH--HHHHHHHHHhhhhhhhhhhhh----hhhhhccCchhHHHHHHHHHHHHHHHHHHhcch-----
Q 017795          159 LGQICQSLGYADTSI--YVSMISIWNFLGRVGGGYFSE----AIVRKFAYPRPVAMAVAQVVMAFALLYYAIGWP-----  227 (366)
Q Consensus       159 l~~i~~~~g~~~~~~--~~sl~~i~~~~g~~~~G~lsD----~~grr~~~~R~~~~~~~~~~~~~~~~l~~~~~~-----  227 (366)
                      .+.+.+.+|.++...  ...+..+++.+..|+.|++||    |+|||+.    + +.++.++.++++.++....+     
T Consensus        25 ~~f~~~~~gl~~~~~g~i~~~~~i~dai~dp~~G~~sDr~~tr~Grrrp----~-~l~g~i~~~~~~~llf~~~p~~~~~   99 (428)
T PF13347_consen   25 LYFYTDVLGLSPALAGLILLVGRIWDAITDPLIGYLSDRTRTRWGRRRP----W-ILIGAILLALSFFLLFSPPPAGLSF   99 (428)
T ss_pred             HHHHHHHcCCCHHHHHHHHHHHHHhhhhcCCcEEEEEeeecccccccce----E-eehhhHHHHHHHHHhhccccchhhh
Confidence            334455579988765  677778899999999999999    5565433    3 35566666666555442211     


Q ss_pred             --h--HHHHHHHHHHHHhhhhhhhHHHHHHHhhCC-CchhhHHHHHHhHhhhhHHHhhhhHHHHHhhhhhhhhhhhhhhc
Q 017795          228 --G--EIYVTTVLVGLSYGAHWAIVPAAASELFGL-KSFGALYNFLTLASPAGSLIFSGVIASGIYDYYAEKQAGLLWKY  302 (366)
Q Consensus       228 --~--~l~~~~~l~G~~~g~~~~~~~~~~se~f~~-~~~g~~~g~~~~~~~~G~~i~gp~i~G~l~d~~~~~~~~~~~~~  302 (366)
                        .  .+.+..+++.+++........++.+|+.+. ++|....+.-.....+|+.+ ...+.+.+.+..++...      
T Consensus       100 ~~~~~~~~~~~~l~~~~~t~~~i~~~al~~~lt~~~~~R~~l~~~~~~~~~~g~~l-~~~~~~~l~~~~g~~~~------  172 (428)
T PF13347_consen  100 TAKLVWLFVFYILFDIAYTFVQIPYNALIPELTPDPDERTRLSSWRMIFSMIGSLL-ASFLAPILVSWFGGGDT------  172 (428)
T ss_pred             hhHHHHHHHHHHHHHHhhhhccCchhhcCccccccHhhhhhHHHHHHHHHHHHHHH-HHHHhhhhhhhhccCcc------
Confidence              1  134445556777777777777888999874 57999999998888888875 56777777765552210      


Q ss_pred             cCCCCCcccCCCCCCcccCCcchHHHHHHHHHHHHHHHHHHHHHHhh
Q 017795          303 NGNMLPVSFRDQETPTCLGSICYSITCGIMAGLCIIAMVMSLIVVHR  349 (366)
Q Consensus       303 ~~~~~~~~~~~~~~~~c~g~~~~~~~f~i~~~~~~~~~~~~~~~~~~  349 (366)
                                         ...|++..++.+++.+++.++.....++
T Consensus       173 -------------------~~~~~~~~~v~~iv~~v~~~i~~~~~ke  200 (428)
T PF13347_consen  173 -------------------SNGYRWMALVLAIVGLVFFLITFFFVKE  200 (428)
T ss_pred             -------------------chHHHHHHHHHHHHHHHHhhhhhheeee
Confidence                               0139999999998888888777777666

>PRK10429 melibiose:sodium symporter; Provisional

Probab=98.33  E-value=1.5e-05  Score=80.37  Aligned_cols=131  Identities=11%  Similarity=0.110  Sum_probs=82.5

Q ss_pred             HHhcHHHHH-HHhCCChhHH--HHHHHHHHHhhhhhhhhhhhhhhhhhccCchhHHHHHHHHHHHHHHHHHH-hc--chh
Q 017795          155 VIDNLGQIC-QSLGYADTSI--YVSMISIWNFLGRVGGGYFSEAIVRKFAYPRPVAMAVAQVVMAFALLYYA-IG--WPG  228 (366)
Q Consensus       155 ~~~~l~~i~-~~~g~~~~~~--~~sl~~i~~~~g~~~~G~lsD~~grr~~~~R~~~~~~~~~~~~~~~~l~~-~~--~~~  228 (366)
                      +..+++.+. +.+|.+...+  ...+.-++..+..|++|++|||...|+..+|+++ ..+.+.+++++.++. ..  ...
T Consensus        25 ~~~~l~~yyt~v~Gls~~~vg~i~~i~ri~dai~dp~~G~lsD~t~sr~Grrrp~i-l~g~i~~~i~~~llf~~p~~~~~  103 (473)
T PRK10429         25 VYMYLMYYYTDVVGLSVGLVGTLFLVARIWDAINDPIMGWIVNNTRSRWGKFKPWI-LIGTLANSVVLFLLFSAHLFEGT  103 (473)
T ss_pred             HHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhhchheeehhcCCCCCCCcchhH-hhhhHHHHHHHHHHHcCCCCCcc
Confidence            334445544 4569988765  7778889999999999999997644433345554 444455555544332 21  111


Q ss_pred             ----HHHHHHHHHHHHhhhhhhhHHHHHHHhh-CCCchhhHHHHHHhHhhhhHHHhhhhHHHHH
Q 017795          229 ----EIYVTTVLVGLSYGAHWAIVPAAASELF-GLKSFGALYNFLTLASPAGSLIFSGVIASGI  287 (366)
Q Consensus       229 ----~l~~~~~l~G~~~g~~~~~~~~~~se~f-~~~~~g~~~g~~~~~~~~G~~i~gp~i~G~l  287 (366)
                          .+++..++.++++........++.+|+. ..++|....+.-.....+|+.+ .+.+...+
T Consensus       104 ~~~~~~~~~~~l~~~~~t~~~ip~~al~~~lt~~~~eR~~l~~~~~~~~~ig~~~-~~~~~~~~  166 (473)
T PRK10429        104 AQYVFVCVTYILWGMTYTIMDIPFWSLVPTLTLDKREREQLVPYPRFFASLAGFV-TAGFTLPF  166 (473)
T ss_pred             HHHHHHHHHHHHHHHHHHHHcchHHhhhHHhCCCHHHHHHHHHHHHHHHHHHHHH-HHHHHHHH
Confidence                1223334556677666677778889987 4778999888877777777665 44444433

>PF03209 PUCC: PUCC protein; InterPro: IPR004896 This protein is required for high-level transcription of the PUC operon

Probab=98.33  E-value=4.3e-05  Score=74.48  Aligned_cols=190  Identities=16%  Similarity=0.130  Sum_probs=124.5

Q ss_pred             HHHHhhhhHHHHHHHHHHHhhhhHHHHHhcHHHHH-HHhCCChhHH--HHHHHHHHHhhhhhhhhhhhhhhhhhccCchh
Q 017795          129 LPQALMKADFLLLFFSLVLASGSGLTVIDNLGQIC-QSLGYADTSI--YVSMISIWNFLGRVGGGYFSEAIVRKFAYPRP  205 (366)
Q Consensus       129 ~~~~l~~~~~~ll~~~~~~~~~~~~~~~~~l~~i~-~~~g~~~~~~--~~sl~~i~~~~g~~~~G~lsD~~grr~~~~R~  205 (366)
                      +++...+++...++...+.+.....+-...+-+|. +-+|++..++  +..+...+..+|-.+.|++..+-..+   .|.
T Consensus       201 ~~~~~~~~~a~~f~~fl~l~t~a~~~QD~iLEPygg~Vfgmsv~eTT~Lta~~~~G~L~G~~~~g~~l~~~~~~---~~~  277 (403)
T PF03209_consen  201 WRQVWASPQARRFFVFLFLGTLAFFMQDVILEPYGGEVFGMSVGETTRLTAFWGGGTLLGMLLAGFLLSRRLGK---KRT  277 (403)
T ss_pred             HHHHHhCCChhHHHHHHHHHHHHHHhhHHHcCCchhHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCc---hHH
Confidence            34455566655555554444444443333444444 4589987665  88888888889999999876642221   121


Q ss_pred             HHHHHHHHHHHHHHHH--HH--hcchhHHHHHHHHHHHHhhhhhhhHHHHHHHhhCCCchhhHHHHHHhHhhhhHHHhhh
Q 017795          206 VAMAVAQVVMAFALLY--YA--IGWPGEIYVTTVLVGLSYGAHWAIVPAAASELFGLKSFGALYNFLTLASPAGSLIFSG  281 (366)
Q Consensus       206 ~~~~~~~~~~~~~~~l--~~--~~~~~~l~~~~~l~G~~~g~~~~~~~~~~se~f~~~~~g~~~g~~~~~~~~G~~i~gp  281 (366)
                      .  ..++.+.++++.+  ++  ..+...+....+++|++.|....-.-+.+.++-..++-|+..|....+..++..+ |.
T Consensus       278 a--~~G~~~~~~~f~lii~a~~~~~~~~~~~~~~l~G~g~G~f~vgals~mM~lt~~~~aG~~mG~WGaaQA~A~Gl-g~  354 (403)
T PF03209_consen  278 A--ALGCLLGALAFALIILAGPLGSPWLFRPGVFLLGLGNGLFTVGALSLMMDLTSAGRAGLFMGAWGAAQAIARGL-GT  354 (403)
T ss_pred             H--HHHHHHHHHHHHHHHHHHhcccchHHHHHHHHHHHhhhHHHHHHHHHHHhCCCCcchhHHHHHHHHHHHHHHHH-HH
Confidence            1  3344444433333  22  3456678889999999999877777778889888899999999999999999996 88


Q ss_pred             hHHHHHhhhhhhhhhhhhhhccCCCCCcccCCCCCCcccCCcchHHHHHHHHHHHHHHHHHHHHH
Q 017795          282 VIASGIYDYYAEKQAGLLWKYNGNMLPVSFRDQETPTCLGSICYSITCGIMAGLCIIAMVMSLIV  346 (366)
Q Consensus       282 ~i~G~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~g~~~~~~~f~i~~~~~~~~~~~~~~~  346 (366)
                      .++|.+.|....-.+        +              .....|..+|.+-++..+++..+...+
T Consensus       355 ~~GG~~~D~~~~~~~--------~--------------~~~~aY~~VF~lEa~ll~~a~~ll~~l  397 (403)
T PF03209_consen  355 FLGGALRDLVRALFG--------N--------------SPALAYGVVFALEAVLLLAALVLLGRL  397 (403)
T ss_pred             HHHHHHHHHHHHhcc--------C--------------CcchHHHHHHHHHHHHHHHHHHHHHHh
Confidence            999999986531100        0              011139999988887766665554433

It is an integral membrane protein. The family includes other proteins form Rhodobacter eg. bacteriochlorophyll synthase.

>PRK11462 putative transporter; Provisional

Probab=98.32  E-value=2.6e-05  Score=78.56  Aligned_cols=134  Identities=13%  Similarity=0.075  Sum_probs=89.4

Q ss_pred             hcHHH-HHHHhCCChhHH--HHHHHHHHHhhhhhhhhhhhhhhhhhccCchhHHHHHHHHHHHHHHHHHHhcc---hh-H
Q 017795          157 DNLGQ-ICQSLGYADTSI--YVSMISIWNFLGRVGGGYFSEAIVRKFAYPRPVAMAVAQVVMAFALLYYAIGW---PG-E  229 (366)
Q Consensus       157 ~~l~~-i~~~~g~~~~~~--~~sl~~i~~~~g~~~~G~lsD~~grr~~~~R~~~~~~~~~~~~~~~~l~~~~~---~~-~  229 (366)
                      .++.. +....|.+...+  ...+.-++..+.-|+.|++|||...|...+||+++..+........+++..+.   .. .
T Consensus        30 ~~l~~fyt~~~Gl~~~~~g~i~~~~ri~Dai~Dp~~G~~~D~t~~r~Gr~rp~il~g~i~~~i~~~llf~~p~~s~~~~~  109 (460)
T PRK11462         30 LYMMFFYTDIFGIPAGFVGTMFLVARALDAISDPCMGLLADRTRSRWGKFRPWVLFGALPFGIVCVLAYSTPDLSMNGKM  109 (460)
T ss_pred             HHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHHhhhheehhccCCCCCCCcchhHhHHHHHHHHHHHHHHhCCCCCcchHH
Confidence            33444 445579987765  67777889999999999999998766666677765544443333333332221   11 2


Q ss_pred             --HHHHHHHHHHHhhhhhhhHHHHHHHhhC-CCchhhHHHHHHhHhhhhHHHhhhhHHHHHhhhh
Q 017795          230 --IYVTTVLVGLSYGAHWAIVPAAASELFG-LKSFGALYNFLTLASPAGSLIFSGVIASGIYDYY  291 (366)
Q Consensus       230 --l~~~~~l~G~~~g~~~~~~~~~~se~f~-~~~~g~~~g~~~~~~~~G~~i~gp~i~G~l~d~~  291 (366)
                        +++..+++.+++........++.+|+.. .++|+...++-..+..+|+.+ ++.+...+....
T Consensus       110 ~y~~~~~~~~~~~~t~~~ipy~al~~~lt~d~~eRt~l~s~r~~~~~iG~~~-~~~~~~plv~~~  173 (460)
T PRK11462        110 IYAAITYTLLTLLYTVVNIPYCALGGVITNDPTQRISLQSWRFVLATAGGML-STVLMMPLVNLI  173 (460)
T ss_pred             HHHHHHHHHHHHHHHHHhccHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHh
Confidence              2334445677777777777788888876 567999999999988888875 666655554433

>PF05631 DUF791: Protein of unknown function (DUF791); InterPro: IPR008509 This family consists of several eukaryotic proteins of unknown function

Probab=98.31  E-value=3.6e-05  Score=73.84  Aligned_cols=124  Identities=14%  Similarity=0.135  Sum_probs=79.5

Q ss_pred             HHHHhCCChhHH--HHHHHHHHHhhhhhhhhhhhhhhhhhccCchhHHHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHH
Q 017795          162 ICQSLGYADTSI--YVSMISIWNFLGRVGGGYFSEAIVRKFAYPRPVAMAVAQVVMAFALLYYAIGWPGEIYVTTVLVGL  239 (366)
Q Consensus       162 i~~~~g~~~~~~--~~sl~~i~~~~g~~~~G~lsD~~grr~~~~R~~~~~~~~~~~~~~~~l~~~~~~~~l~~~~~l~G~  239 (366)
                      +.+++|++..++  +...-...+.+.+++.|.++||+|||+..      .+..++..++++.-...+...+++++++-|+
T Consensus        60 LY~~yg~~~~qIa~Lf~~Gf~Ss~i~g~~~G~laD~~Grk~~c------l~~cily~~scl~k~~~~~~~L~~GRvlgGi  133 (354)
T PF05631_consen   60 LYESYGFSEHQIAILFVAGFASSAIFGTFVGSLADRYGRKKAC------LLFCILYSLSCLTKHSSNYPVLLLGRVLGGI  133 (354)
T ss_pred             HHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCchHHH------HHHHHHHHHHHHHHhccccHHHHHHHHHHHH
Confidence            446789988776  33334445667788889999999998765      4555555555555556777889999999999


Q ss_pred             HhhhhhhhHHH-HHHHhh----CCCchhhHHHHHH-hHhhhhHHHhhhhHHHHHhhhhh
Q 017795          240 SYGAHWAIVPA-AASELF----GLKSFGALYNFLT-LASPAGSLIFSGVIASGIYDYYA  292 (366)
Q Consensus       240 ~~g~~~~~~~~-~~se~f----~~~~~g~~~g~~~-~~~~~G~~i~gp~i~G~l~d~~~  292 (366)
                      +....++..-+ ++.|.-    +.+..+..++.+. ..+.+-++ .+++++-++.|..+
T Consensus       134 aTSLLfS~FEsW~V~Eh~~~g~~~~~L~~tF~~~tf~~n~~vAI-~aGv~a~~l~~~~~  191 (354)
T PF05631_consen  134 ATSLLFSAFESWMVHEHNKRGFPQEWLSDTFSLATFFGNGVVAI-GAGVVANVLADWFG  191 (354)
T ss_pred             HHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHhHHHHH-HHhHHHHHHHHHhC
Confidence            98888877766 555653    3333444444443 22223333 24555555555544

>PF00083 Sugar_tr: Sugar (and other) transporter; InterPro: IPR005828 Recent genome-sequencing data and a wealth of biochemical and molecular genetic investigations have revealed the occurrence of dozens of families of primary and secondary transporters

Probab=98.30  E-value=6.3e-09  Score=103.66  Aligned_cols=103  Identities=21%  Similarity=0.273  Sum_probs=88.0

Q ss_pred             HHHHHHHHHhhhhhhhhhhhhhhhhhccCchhHHHHHHHHHHHHHHHHHH-hc---chhHHHHHHHHHHHHhhhhhhhHH
Q 017795          174 YVSMISIWNFLGRVGGGYFSEAIVRKFAYPRPVAMAVAQVVMAFALLYYA-IG---WPGEIYVTTVLVGLSYGAHWAIVP  249 (366)
Q Consensus       174 ~~sl~~i~~~~g~~~~G~lsD~~grr~~~~R~~~~~~~~~~~~~~~~l~~-~~---~~~~l~~~~~l~G~~~g~~~~~~~  249 (366)
                      ..+...++..+|.++.|+++||+|||+.+      .++.+++.++.++.. ..   +...+.+++++.|++.|+.....+
T Consensus        51 ~~~~~~~g~~~G~~~~g~~~d~~GRk~~~------~~~~~~~~i~~~~~~~~~~~~~~~~~~~~R~~~G~~~g~~~~~~~  124 (451)
T PF00083_consen   51 LTSSFFIGAIVGALIFGFLADRYGRKPAL------IISALLMIIGSILIAFAPSYNNFWMLLIGRFLIGFGIGGAYVVSP  124 (451)
T ss_pred             HHHHHHhhhcccccccccccccccccccc------ccccccccccccccccccccccccccccccccccccccccccccc
Confidence            67888899999999999999999999877      667777777766655 33   466788899999999999999999


Q ss_pred             HHHHHhhCCCchhhHHHHHHhHhhhhHHHhhhhH
Q 017795          250 AAASELFGLKSFGALYNFLTLASPAGSLIFSGVI  283 (366)
Q Consensus       250 ~~~se~f~~~~~g~~~g~~~~~~~~G~~i~gp~i  283 (366)
                      .++.|..++++|+....+......+|..+ +..+
T Consensus       125 ~~~~E~~~~~~R~~~~~~~~~~~~~G~~~-~~~~  157 (451)
T PF00083_consen  125 IYISEIAPPKHRGFLSSLFQLFWALGILL-ASLI  157 (451)
T ss_pred             ccccccccccccccccccccccccccccc-cccc
Confidence            99999999999999999999988888875 5443

Two such families have been found to occur ubiquitously in all classifications of living organisms. These are the ATP-binding cassette (ABC) superfamily and the major facilitator superfamily (MFS), also called the uniporter-symporter-antiporter family. While ABC family permeases are in general multicomponent primary active transporters, capable of transporting both small molecules and macromolecules in response to ATP hydrolysis the MFS transporters are single-polypeptide secondary carriers capable only of transporting small solutes in response to chemiosmotic ion gradients. Although well over 100 families of transporters have now been recognised and classified, the ABC superfamily and MFS account for nearly half of the solute transporters encoded within the genomes of microorganisms. They are also prevalent in higher organisms. The importance of these two families of transport systems to living organisms can therefore not be overestimated []. The MFS was originally believed to function primarily in the uptake of sugars but subsequent studies revealed that drug efflux systems, Krebs cycle metabolites, organophosphate:phosphate exchangers, oligosaccharide:H1 symport permeases, and bacterial aromatic acid permeases were all members of the MFS. These observations led to the probability that the MFS is far more widespread in nature and far more diverse in function than had been thought previously. 17 subgroups of the MFS have been identified []. Evidence suggests that the MFS permeases arose by a tandem intragenic duplication event in the early prokaryotes. This event generated a 2-transmembrane-spanner (TMS) protein topology from a primordial 6-TMS unit. Surprisingly, all currently recognised MFS permeases retain the two six-TMS units within a single polypeptide chain, although in 3 of the 17 MFS families, an additional two TMSs are found []. Moreover, the well-conserved MFS specific motif between TMS2 and TMS3 and the related but less well conserved motif between TMS8 and TMS9 [] prove to be a characteristic of virtually all of the more than 300 MFS proteins identified.; GO: 0022857 transmembrane transporter activity, 0055085 transmembrane transport, 0016021 integral to membrane

>TIGR00788 fbt folate/biopterin transporter

Probab=98.24  E-value=7.1e-06  Score=82.81  Aligned_cols=122  Identities=11%  Similarity=0.077  Sum_probs=85.9

Q ss_pred             HHhCCChhHH--HHHHHHHHHhhhhhhhhhhhhhhhhhccCchhHHHHHHHHHHHHHHHHHH---------h--cchhHH
Q 017795          164 QSLGYADTSI--YVSMISIWNFLGRVGGGYFSEAIVRKFAYPRPVAMAVAQVVMAFALLYYA---------I--GWPGEI  230 (366)
Q Consensus       164 ~~~g~~~~~~--~~sl~~i~~~~g~~~~G~lsD~~grr~~~~R~~~~~~~~~~~~~~~~l~~---------~--~~~~~l  230 (366)
                      ..+|+++...  .....+++..+|..+.+.+.+|++.|+.      +.++.++.+++.+...         .  .+...+
T Consensus       281 ~~lG~s~~~~G~~~~~~~v~~i~g~~~~~~~~~~~~~r~~------l~~~~~l~~~~~~~~~~l~~~~~~~~gi~~~~~~  354 (468)
T TIGR00788       281 QCLPGGPSFSGMSKVVGNLGSLCGVGGYDRFLKTFPYRLL------FGVTTLLYTLSSLFDLILVKRWNLAFGISDEVFV  354 (468)
T ss_pred             ccCCCCcchhhhHHHHHHHHHHHHHHHHHHHHhhCCHHHH------HHHHHHHHHHHHhCceeeeeccccccCCCCeeee
Confidence            3578887765  4555566666666666666555544332      2555555555443321         0  111233


Q ss_pred             HHHHHHHHHHhhhhhhhHHHHHHHhhCCCchhhHHHHHHhHhhhhHHHhhhhHHHHHhhhhh
Q 017795          231 YVTTVLVGLSYGAHWAIVPAAASELFGLKSFGALYNFLTLASPAGSLIFSGVIASGIYDYYA  292 (366)
Q Consensus       231 ~~~~~l~G~~~g~~~~~~~~~~se~f~~~~~g~~~g~~~~~~~~G~~i~gp~i~G~l~d~~~  292 (366)
                      ....++.+++.+..+......+++..+++..|+.+++.+...++|..+ ++.++|.+.+..|
T Consensus       355 ~~~~~l~~~~~g~~~~~~~~~~~~~~p~~~egt~~al~~s~~~lg~~v-~~~~gg~l~~~~g  415 (468)
T TIGR00788       355 LGDSIIAEVLAQLKFMPFLVLLARLCPSGCESSVFALLASILHLGSSV-SGFLGVLLMETIG  415 (468)
T ss_pred             eehhHHHHHHHHHHHccHHHHHHHhCCCCceehHHHHHHHHHHHHHHH-HHHHHHHHHHHcC
Confidence            455677788888888888889999999999999999999999999996 9999999998876

The only functionally characterized members of the family are from protozoa and include FT1, the major folate transporter in Leishmania, and BT1, the Leishmania biopterin/folate transporter. A related protein in Trypanosoma brucei, ESAGIO, shows weak folate/biopterin transport activity.

>TIGR01301 GPH_sucrose GPH family sucrose/H+ symporter

Probab=98.23  E-value=4.7e-05  Score=76.83  Aligned_cols=184  Identities=13%  Similarity=0.065  Sum_probs=114.1

Q ss_pred             hHHHHHHHHHHHhhhhHHHHHhcHHHH-HHH-hCCChh-------HH-HHHHHHHHHhhhhhhhhhhhhhhhhhccCchh
Q 017795          136 ADFLLLFFSLVLASGSGLTVIDNLGQI-CQS-LGYADT-------SI-YVSMISIWNFLGRVGGGYFSEAIVRKFAYPRP  205 (366)
Q Consensus       136 ~~~~ll~~~~~~~~~~~~~~~~~l~~i-~~~-~g~~~~-------~~-~~sl~~i~~~~g~~~~G~lsD~~grr~~~~R~  205 (366)
                      +.+|.+++..++.+.+.+.+..+...+ .++ ++.++.       .. +.+...+.+.+...+.+.+-+++.||..- |+
T Consensus       258 ~~m~~l~~vqffsW~a~f~~~~y~T~~vg~~v~~~~~~~~~~y~~gvr~G~~~l~~~s~~~~i~s~~l~~l~~~~g~-~k  336 (477)
T TIGR01301       258 RPVWILLLVTCLNWIAWFPFILFDTDWMGREVYGGSVNQGAKYDDGVRAGAFGLMLNSVVLGITSIGMEKLCRGWGA-GK  336 (477)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHcCCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc-ch
Confidence            467888888888877766555544444 333 332211       10 12222233333333434444444333221 12


Q ss_pred             HHHHHHHHHHHHHHHHHH-hcc---------------------hhHHHHHHHHHHHHhhhhhhhHHHHHHHhhCC--Cch
Q 017795          206 VAMAVAQVVMAFALLYYA-IGW---------------------PGEIYVTTVLVGLSYGAHWAIVPAAASELFGL--KSF  261 (366)
Q Consensus       206 ~~~~~~~~~~~~~~~l~~-~~~---------------------~~~l~~~~~l~G~~~g~~~~~~~~~~se~f~~--~~~  261 (366)
                      ..-.++.++.+++++... ..+                     ....++...++|+..+...++-++++++..+.  ++.
T Consensus       337 ~~~~~s~~~~~~~l~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~Gi~~A~~~siPfal~s~~~~~~~~~~  416 (477)
T TIGR01301       337 RLWGIVNIILAICLAATVLVTYVAKNSRYYDGDGESLPPPTGIKASALIVFAILGIPLAITYSIPFALASIRSSNLGAGQ  416 (477)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHhhhhccccccccccccCcchhhHHHHHHHHHHhhHHHHHHHHHhHHHHHHHccccCCCC
Confidence            222566566665555433 111                     14456667788999999889999999999884  567


Q ss_pred             hhHHHHHHhHhhhhHHHhhhhHHHHHhhhhhhhhhhhhhhccCCCCCcccCCCCCCcccCCcchHHHHHHHHHHHHHHHH
Q 017795          262 GALYNFLTLASPAGSLIFSGVIASGIYDYYAEKQAGLLWKYNGNMLPVSFRDQETPTCLGSICYSITCGIMAGLCIIAMV  341 (366)
Q Consensus       262 g~~~g~~~~~~~~G~~i~gp~i~G~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~g~~~~~~~f~i~~~~~~~~~~  341 (366)
                      |..+|+.|.+..+...+ .....|.+.+..++                              .-.+++.+.++..+++++
T Consensus       417 G~~mgilN~~I~lpQii-~sl~~g~~~~~~g~------------------------------~~~~~~~~~gv~~~~aa~  465 (477)
T TIGR01301       417 GLSMGVLNLAIVIPQII-VSLGSGPWDQLFGG------------------------------GNLPAFVVGAVAAFVSGL  465 (477)
T ss_pred             cchhhHHHHHHHHHHHH-HHHHHHHHHHHcCC------------------------------CCeeHHHHHHHHHHHHHH
Confidence            99999999999999997 56777876665551                              145678888888888888


Q ss_pred             HHHHHHhhcH
Q 017795          342 MSLIVVHRTK  351 (366)
Q Consensus       342 ~~~~~~~~~r  351 (366)
                      +++++.+|.+
T Consensus       466 ~~~~~~~~~~  475 (477)
T TIGR01301       466 LALILLPRPR  475 (477)
T ss_pred             HHHHhCCCCC
Confidence            8888777654

This model represents sucrose/proton symporters, found in plants, from the Glycoside-Pentoside-Hexuronide (GPH)/cation symporter family. These proteins are predicted to have 12 transmembrane domains. Members may export sucrose (e.g. SUT1, SUT4) from green parts to the phloem for long-distance transport or import sucrose (e.g SUT2) to sucrose sinks such as the tap root of the carrot.

>PRK10207 dipeptide/tripeptide permease B; Provisional

Probab=98.21  E-value=0.00018  Score=73.16  Aligned_cols=153  Identities=14%  Similarity=0.069  Sum_probs=99.7

Q ss_pred             HHHHHHHHHhhhhhhhhhhhhhhhhhccC-chhHHHHHHHHHHHHHHHHH-------Hhc----chhHHHHHHHHHHHHh
Q 017795          174 YVSMISIWNFLGRVGGGYFSEAIVRKFAY-PRPVAMAVAQVVMAFALLYY-------AIG----WPGEIYVTTVLVGLSY  241 (366)
Q Consensus       174 ~~sl~~i~~~~g~~~~G~lsD~~grr~~~-~R~~~~~~~~~~~~~~~~l~-------~~~----~~~~l~~~~~l~G~~~  241 (366)
                      +.++..++..+..++.|++.||+++|+.- ..+.-+.+++++.+++++.+       ...    +...+....++.|+|.
T Consensus       314 ~~~~n~~~iii~~pl~~~l~~rl~~r~~~~~~~~k~~~G~~l~~~~~~~~~~~~~~~~~~~~~~s~~~~i~~~~l~g~Ge  393 (489)
T PRK10207        314 FQALNPFWVVVASPILAGIYTHLGSKGKDLSMPMKFTLGMFLCSLGFLTAAAAGMWFADAQGLTSPWFIVLVYLFQSLGE  393 (489)
T ss_pred             HHhHhHHHHHHHHHHHHHHHHHHhhCCCCCCcHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCccCHHHHHHHHHHHHHHH
Confidence            55555566667788889999999988632 22223355666666565422       111    1234556677889999


Q ss_pred             hhhhhhHHHHHHHhhCCCchhhHHHHHHhHhhhhHHHhhhhHHHHHhhhhhhhhhhhhhhccCCCCCcccCCCCCCcccC
Q 017795          242 GAHWAIVPAAASELFGLKSFGALYNFLTLASPAGSLIFSGVIASGIYDYYAEKQAGLLWKYNGNMLPVSFRDQETPTCLG  321 (366)
Q Consensus       242 g~~~~~~~~~~se~f~~~~~g~~~g~~~~~~~~G~~i~gp~i~G~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~g  321 (366)
                      +...+...+.+.+..|++..|.++|+.++...+|+.+ |..+++........ .                ++.+     .
T Consensus       394 ~~~~~~g~~~~~~~aP~~~~g~~~g~~~l~~~ig~~l-g~~l~~~~~~~~~~-~----------------~~~~-----~  450 (489)
T PRK10207        394 LFISALGLAMIAALVPQHLMGFILGMWFLTQAAAFLL-GGYVATFTAVPDNI-T----------------DPLE-----T  450 (489)
T ss_pred             HHHhHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHH-HHHHHHHhcccccc-c----------------cchh-----h
Confidence            9888888899999999999999999999999999996 77766654211110 0                0000     0


Q ss_pred             CcchHHHHHHHHHHHHHHHHHHHHHHhh
Q 017795          322 SICYSITCGIMAGLCIIAMVMSLIVVHR  349 (366)
Q Consensus       322 ~~~~~~~f~i~~~~~~~~~~~~~~~~~~  349 (366)
                      ...|.+.|...++.++++.++.+++.++
T Consensus       451 ~~~~~~~f~~~~~~~~~~~v~~~~~~~~  478 (489)
T PRK10207        451 LPVYTNVFGKIGLVTLGVAVVMALMVPW  478 (489)
T ss_pred             hhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            0127788888887777766665554433

>PRK09848 glucuronide transporter; Provisional

Probab=98.18  E-value=7.5e-05  Score=74.60  Aligned_cols=112  Identities=15%  Similarity=0.196  Sum_probs=70.4

Q ss_pred             HHHHHHhCCChhHH--HHHHHHHHHhhhhhhhhhhhhhhhhhccCchhHHHHHHHHHHHHHHHHHHhc----c-hhH--H
Q 017795          160 GQICQSLGYADTSI--YVSMISIWNFLGRVGGGYFSEAIVRKFAYPRPVAMAVAQVVMAFALLYYAIG----W-PGE--I  230 (366)
Q Consensus       160 ~~i~~~~g~~~~~~--~~sl~~i~~~~g~~~~G~lsD~~grr~~~~R~~~~~~~~~~~~~~~~l~~~~----~-~~~--l  230 (366)
                      .++.+.+|++...+  ..++..++..+..+++|+++||.++|+..+|+++...+...+..+.+++...    . ...  .
T Consensus        33 ~y~~~~~gl~~~~~g~~~~~~~~~~~~~~~~~G~l~Dr~~~~~Gr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  112 (448)
T PRK09848         33 SYYTDVAGVGAAAAGTMLLLVRVFDAFADVFAGRVVDSVNTRWGKFRPFLLFGTAPLMIFSVLVFWVPTDWSHSSKVVYA  112 (448)
T ss_pred             HHHHHHcCCCHHHHHHHHHHHHHHHHHhhhhheeeeecCCCCCcCchHHHHHHHHHHHHHHHHHHhCcCCCCcchHHHHH
Confidence            34445579987766  7778889999999999999999988776666666555554444444433221    1 111  2


Q ss_pred             HHHHHHHHHHhhhhhhhHHHHHHHhhCC-CchhhHHHHHHhH
Q 017795          231 YVTTVLVGLSYGAHWAIVPAAASELFGL-KSFGALYNFLTLA  271 (366)
Q Consensus       231 ~~~~~l~G~~~g~~~~~~~~~~se~f~~-~~~g~~~g~~~~~  271 (366)
                      ++..++.+++++...+...++..++... ++|....+.-..+
T Consensus       113 ~~~~~~~~~~~~~~~~~~~al~~~~~~~~~~r~~~~~~r~~~  154 (448)
T PRK09848        113 YLTYMGLGLCYSLVNIPYGSLATAMTQQPQSRARLGAARGIA  154 (448)
T ss_pred             HHHHHHHHHHHHHhcccHhhhhhhhcCCHHHHHHHHHHHHHH
Confidence            2334556777776666666666666544 4577665554433

>PRK09584 tppB putative tripeptide transporter permease; Reviewed

Probab=98.17  E-value=0.00017  Score=73.49  Aligned_cols=154  Identities=15%  Similarity=0.133  Sum_probs=101.6

Q ss_pred             HHHHHHHHHhhhhhhhhhhhhhhhhhccCchhHHHHHHHHHHHHHHHHHHhcc----------hhHHHHHHHHHHHHhhh
Q 017795          174 YVSMISIWNFLGRVGGGYFSEAIVRKFAYPRPVAMAVAQVVMAFALLYYAIGW----------PGEIYVTTVLVGLSYGA  243 (366)
Q Consensus       174 ~~sl~~i~~~~g~~~~G~lsD~~grr~~~~R~~~~~~~~~~~~~~~~l~~~~~----------~~~l~~~~~l~G~~~g~  243 (366)
                      +.++-.+...+..++.+++-.|.++|..  .+..+.+++++++++++.+....          ...+....++.|+|-+.
T Consensus       321 ~~s~n~i~iil~~p~~~~~~~~l~~r~~--~~~~~~~G~~l~~l~f~~l~~~~~~~~~~~~vs~~~~~~~~~l~~~ge~~  398 (500)
T PRK09584        321 YQALNPFWIMIGSPILAAIYNKMGDRLP--MPHKFAIGMVLCSGAFLVLPLGAKFANDAGIVSVNWLIASYGLQSIGELM  398 (500)
T ss_pred             HHHHhHHHHHHHHHHHHHHHHHhCcCCC--cHHHHHHHHHHHHHHHHHHHHHHHhcCCCCccCHHHHHHHHHHHHHHHHH
Confidence            5556666666666766666666666543  34455778888888877754221          23566778889999999


Q ss_pred             hhhhHHHHHHHhhCCCchhhHHHHHHhHhhhhHHHhhhhHHHHHhhhhhhhhhhhhhhccCCCCCcccCCCCCCcccCC-
Q 017795          244 HWAIVPAAASELFGLKSFGALYNFLTLASPAGSLIFSGVIASGIYDYYAEKQAGLLWKYNGNMLPVSFRDQETPTCLGS-  322 (366)
Q Consensus       244 ~~~~~~~~~se~f~~~~~g~~~g~~~~~~~~G~~i~gp~i~G~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~g~-  322 (366)
                      ..+...+++.+..|++.+|..+|+..++..+|+.+ ++.+.+........                       ...... 
T Consensus       399 ~~p~g~s~~~~~aP~~~rg~~~g~~~l~~a~g~~~-~g~~~~~~~~~~~~-----------------------~~~~~~~  454 (500)
T PRK09584        399 ISGLGLAMVAQLVPQRLMGFIMGSWFLTTAGAALI-AGYVANLMAVPDNV-----------------------TDPLMSL  454 (500)
T ss_pred             HhHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHH-HHHHHHHhcccccc-----------------------ccchhhh
Confidence            99999999999999999999999888888777774 55555433211000                       000000 


Q ss_pred             cchHHHHHHHHHHHHHHHHHHHHHHhhcHHH
Q 017795          323 ICYSITCGIMAGLCIIAMVMSLIVVHRTKSV  353 (366)
Q Consensus       323 ~~~~~~f~i~~~~~~~~~~~~~~~~~~~r~~  353 (366)
                      ..|.+.|...++++++.+++.+++.++.+|.
T Consensus       455 ~~~~~~f~~~~~~~~~~a~~~~~~~~~~~k~  485 (500)
T PRK09584        455 EVYGRVFLQIGIATAVIAVLMLLTAPKLNRM  485 (500)
T ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            1278899888887776666655555554443

>KOG3762 consensus Predicted transporter [General function prediction only]

Probab=98.14  E-value=1.7e-05  Score=79.24  Aligned_cols=176  Identities=19%  Similarity=0.208  Sum_probs=119.9

Q ss_pred             HHhhhhHHHHHH-HHHHHhhhhHHHHHhcHHHHHHHhCCChhHH-HHH-HHHHHHhhhhhhhhhhhhhhhhhccCchhHH
Q 017795          131 QALMKADFLLLF-FSLVLASGSGLTVIDNLGQICQSLGYADTSI-YVS-MISIWNFLGRVGGGYFSEAIVRKFAYPRPVA  207 (366)
Q Consensus       131 ~~l~~~~~~ll~-~~~~~~~~~~~~~~~~l~~i~~~~g~~~~~~-~~s-l~~i~~~~g~~~~G~lsD~~grr~~~~R~~~  207 (366)
                      +.+.+++..+++ .+.+.+.+.++ +.+++=..+++.|-.+.-. .++ +...+-++.-++.+++-+|+|+-+.+     
T Consensus       366 ~~~~s~~~llff~~av~mG~g~~l-v~tFLfWHled~~~~~~LfGv~~a~~~~gEI~~~ffs~klI~kiGHv~v~-----  439 (618)
T KOG3762|consen  366 KVFASPHILLFFFVAVVMGAGVGL-VFTFLFWHLEDLGGIKTLFGVVSALCHAGEILFYFFSFKLIEKIGHVNVM-----  439 (618)
T ss_pred             HHhcCCCEEehhHHHHHHHHHHHH-HHHHHHHHHhhcCCcceeeeehhhhhccchHHHHHHHHHHHHHhccccee-----
Confidence            344455444333 33333333333 3344555678877433321 222 22334455556778888888886655     


Q ss_pred             HHHHHHHHHHHHHHHH-hcchhHHHHHHHHHHHHhhhhhhhHHHHHHHhhCCCchhhHHHHHHh-HhhhhHHHhhhhHHH
Q 017795          208 MAVAQVVMAFALLYYA-IGWPGEIYVTTVLVGLSYGAHWAIVPAAASELFGLKSFGALYNFLTL-ASPAGSLIFSGVIAS  285 (366)
Q Consensus       208 ~~~~~~~~~~~~~l~~-~~~~~~l~~~~~l~G~~~g~~~~~~~~~~se~f~~~~~g~~~g~~~~-~~~~G~~i~gp~i~G  285 (366)
                       ..++....+=++.+. ..+++.++..-++.|+..+..|..+.++++..-|++-++++.+++.. .-.+|-.+ |.+|+|
T Consensus       440 -~lgLa~~~~Rf~~~S~L~n~W~vLPieilqgit~aliWaa~~sY~s~vaPp~l~at~Q~l~~g~f~GlG~g~-GslIGG  517 (618)
T KOG3762|consen  440 -YLGLACNVGRFLYYSYLQNPWMVLPIEILQGITHALIWAAIISYASHVAPPGLRATAQGLLQGIFHGLGKGL-GSLIGG  517 (618)
T ss_pred             -eehhhHHHHHHHHHHHhcCchheeeHHHHHHHHHHHHHHHHHHHHHhhCCCcchHHHHHHHHHHhcccCcch-hhhhhh
Confidence             555555555555555 57788888888999999999999999999999999999999998755 46678885 889999


Q ss_pred             HHhhhhhhhhhhhhhhccCCCCCcccCCCCCCcccCCcchHHHHHHHHHHHHHHHHHHHHH
Q 017795          286 GIYDYYAEKQAGLLWKYNGNMLPVSFRDQETPTCLGSICYSITCGIMAGLCIIAMVMSLIV  346 (366)
Q Consensus       286 ~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~g~~~~~~~f~i~~~~~~~~~~~~~~~  346 (366)
                      .+..+.+                                -+..|.+.++.|++.++..+.+
T Consensus       518 ~~v~~fg--------------------------------~~ttf~~~giAcl~~l~~~~~i  546 (618)
T KOG3762|consen  518 FVVERFG--------------------------------ARTTFRIFGIACLVTLALFISI  546 (618)
T ss_pred             hhheeeh--------------------------------hHHHHHHHHHHHHHHHHHHHHh
Confidence            9998887                                6788888888777765554443

>PF06813 Nodulin-like: Nodulin-like; InterPro: IPR010658 This entry represents a conserved region within plant nodulin-like proteins and a number of uncharacterised proteins

Probab=98.13  E-value=0.0001  Score=68.00  Aligned_cols=126  Identities=15%  Similarity=0.098  Sum_probs=82.6

Q ss_pred             hhhHHHHHhcHHHHHHHhCCChhHH--HHHHHHHHHhhhhhhhhhhhhhhhhhccCchhHHHHHHHHHHHHHHHHHH--h
Q 017795          149 SGSGLTVIDNLGQICQSLGYADTSI--YVSMISIWNFLGRVGGGYFSEAIVRKFAYPRPVAMAVAQVVMAFALLYYA--I  224 (366)
Q Consensus       149 ~~~~~~~~~~l~~i~~~~g~~~~~~--~~sl~~i~~~~g~~~~G~lsD~~grr~~~~R~~~~~~~~~~~~~~~~l~~--~  224 (366)
                      .+..+.+..+-|++.+.+|++.++.  ....-.++..+ .+..|.+.|++|.+...      .++.+...+|+.++.  .
T Consensus        15 ~Gt~Y~Fs~yS~~Lk~~l~~sq~~l~~l~~~~~~G~~~-G~~~G~l~d~~gp~~~l------~iG~~~~~~GY~~~~l~~   87 (250)
T PF06813_consen   15 SGTTYTFSAYSPQLKSRLGYSQSQLNTLSTAGDIGSYF-GILAGLLYDRFGPWVVL------LIGAVLGFVGYGLLWLAV   87 (250)
T ss_pred             cCcccchhhhhHHHHHHhCCCHHHHHHHHHHHHHHhhc-cHHHHHHHHhcchHHHH------HHHHHHHHHHHHHHHHHH
Confidence            4455677778889999999998876  44444566665 48889999999865433      667777777766543  2


Q ss_pred             cc----hh--HHHHHHHHHHHHhhhhhhhHHHHHHHhhCCCchhhHHHHHHhHhhhhHHHhhhh
Q 017795          225 GW----PG--EIYVTTVLVGLSYGAHWAIVPAAASELFGLKSFGALYNFLTLASPAGSLIFSGV  282 (366)
Q Consensus       225 ~~----~~--~l~~~~~l~G~~~g~~~~~~~~~~se~f~~~~~g~~~g~~~~~~~~G~~i~gp~  282 (366)
                      ..    +.  .+.+..++.|.+.....+....+..+.|| ++||++.|+.-....+++.+++.+
T Consensus        88 ~~~i~~~~~~~~~~~~~l~~~s~~~~~ta~lvt~~~NFP-~~RG~vvgilk~~~GLSaai~t~i  150 (250)
T PF06813_consen   88 SGRIPSLPVWLMCLFLFLGGNSSCWFNTASLVTCVRNFP-RSRGTVVGILKGFFGLSAAIFTQI  150 (250)
T ss_pred             hCccCccchHHHHHHHHHHcccHHHhhhHHHHHHHHhCc-cccCceehhhhHHHHhHHHHHHHH
Confidence            11    12  22233333334333323344445568896 689999999999988888876543

>PF03825 Nuc_H_symport: Nucleoside H+ symporter

Probab=98.09  E-value=0.00016  Score=71.49  Aligned_cols=117  Identities=15%  Similarity=0.177  Sum_probs=76.3

Q ss_pred             HHhcHHHHHHHhCCChhHH--HHHHHHHHHhhhhhhhhhhhhhhhhhccCchhHHHHHHHHHHHHHHHHHH-hcchhHHH
Q 017795          155 VIDNLGQICQSLGYADTSI--YVSMISIWNFLGRVGGGYFSEAIVRKFAYPRPVAMAVAQVVMAFALLYYA-IGWPGEIY  231 (366)
Q Consensus       155 ~~~~l~~i~~~~g~~~~~~--~~sl~~i~~~~g~~~~G~lsD~~grr~~~~R~~~~~~~~~~~~~~~~l~~-~~~~~~l~  231 (366)
                      +...++.+.++.|++..++  ..++..+..+++.+++|+++||.++++..     +.+..++.++..+... ..+...++
T Consensus        21 ~~p~~~~~L~~~G~s~~qIG~l~a~~~~~~i~~~~~~g~~aDr~~~~~~~-----l~~~~l~~~~~~~~~~~~~~f~~~~   95 (400)
T PF03825_consen   21 FLPYLPLYLESRGFSGTQIGILLAVGPLARIVSPPFWGAIADRFGSAKRI-----LALLSLLSALALLLLAFSSSFWWLF   95 (400)
T ss_pred             HHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhHHHH-----HHHHHHHHHHHHHHHHHhccHHHHH
Confidence            4456788999999998887  88889999999999999999998664332     2333444444333333 34445566


Q ss_pred             HHHHHHHHHhhhhhhhHHHHHHHhhCC--CchhhHHHHHHhHhhhhH
Q 017795          232 VTTVLVGLSYGAHWAIVPAAASELFGL--KSFGALYNFLTLASPAGS  276 (366)
Q Consensus       232 ~~~~l~G~~~g~~~~~~~~~~se~f~~--~~~g~~~g~~~~~~~~G~  276 (366)
                      +..++..+.+....++.-++..+....  +++|..--..+.+..+++
T Consensus        96 ~~~~l~~~~~~p~~pl~dsi~~~~~~~~~~~YG~iRlwGSiGf~~~~  142 (400)
T PF03825_consen   96 VIMLLFSFFFSPTMPLSDSIALSYLGDRGKDYGRIRLWGSIGFIVAA  142 (400)
T ss_pred             HHHHHHHHHHccHHHHHHHHHHHHcccccCCCCcchhhhhHHHHHHH
Confidence            666677777777777777777776542  234444444344443333

>PF03209 PUCC: PUCC protein; InterPro: IPR004896 This protein is required for high-level transcription of the PUC operon

Probab=98.07  E-value=0.0001  Score=71.93  Aligned_cols=128  Identities=15%  Similarity=0.043  Sum_probs=91.0

Q ss_pred             HHHhCCChhHH--HHHHHHHHHhhhhhhhhhhhhhhhhhccCchhHHHHHHHHHHHHHHHHHH-----hcc--------h
Q 017795          163 CQSLGYADTSI--YVSMISIWNFLGRVGGGYFSEAIVRKFAYPRPVAMAVAQVVMAFALLYYA-----IGW--------P  227 (366)
Q Consensus       163 ~~~~g~~~~~~--~~sl~~i~~~~g~~~~G~lsD~~grr~~~~R~~~~~~~~~~~~~~~~l~~-----~~~--------~  227 (366)
                      ..|++.+..-.  .+++..+... .|+.+|+.||+...-..++|..++..+.++.+.+..+..     ...        .
T Consensus         7 IvEL~vpA~lv~~lval~~~~ap-~R~~~G~~SD~~~s~~G~rRtPyI~~G~~~~~~g~~~ap~a~~~l~~~~~~~~~~~   85 (403)
T PF03209_consen    7 IVELGVPAWLVALLVALHYLVAP-LRVWFGHRSDTHPSILGWRRTPYIWGGTLLQAGGLAIAPFALLLLAESGQQSSGPF   85 (403)
T ss_pred             HHHhccHHHHHHHHHHHHHHHHH-HHHHhccccccCcccCcCCchhhhHHHHHHHHHHHHHHHHHHHHHccccccccccc
Confidence            45666654432  6666666555 699999999999833444455555666655555443321     111        1


Q ss_pred             h----HHHHHHHHHHHHhhhhhhhHHHHHHHhhCCCchhhHHHHHHhHhhhhHHHhhhhHHHHHhhhhh
Q 017795          228 G----EIYVTTVLVGLSYGAHWAIVPAAASELFGLKSFGALYNFLTLASPAGSLIFSGVIASGIYDYYA  292 (366)
Q Consensus       228 ~----~l~~~~~l~G~~~g~~~~~~~~~~se~f~~~~~g~~~g~~~~~~~~G~~i~gp~i~G~l~d~~~  292 (366)
                      .    ...+...++|+|.+...+...+.++|..++++|+.+.+++....-+|..+ +.++.|.+.|.+.
T Consensus        86 ~~g~~~a~l~F~l~G~G~~~s~T~~lALl~D~~~e~~R~~~v~ivw~Mli~G~iv-~ai~~g~lL~~~s  153 (403)
T PF03209_consen   86 WLGLALAALAFLLYGLGVHASGTSFLALLADLAPEERRPRVVAIVWVMLIVGIIV-SAIVFGRLLDPFS  153 (403)
T ss_pred             HHHHHHHHHHHHHHHhhHhHhHHHHHHHHHhcCCHhhhhhhHHHHHHHHHHHHHH-HHHHHHHHccccC
Confidence            1    22345567788888888888899999999999999999999998899986 8999999888765

It is an integral membrane protein. The family includes other proteins form Rhodobacter eg. bacteriochlorophyll synthase.

>KOG2563 consensus Permease of the major facilitator superfamily [General function prediction only]

Probab=98.07  E-value=4e-05  Score=75.27  Aligned_cols=159  Identities=14%  Similarity=0.108  Sum_probs=105.7

Q ss_pred             CCHHHHhhhhHHHHHHHHHHHhhhhHHHHHhcHHHHHHHhCCChhHH--HHHHHHHHHhhhhhhhhhhhhhhhhhccCch
Q 017795          127 FTLPQALMKADFLLLFFSLVLASGSGLTVIDNLGQICQSLGYADTSI--YVSMISIWNFLGRVGGGYFSEAIVRKFAYPR  204 (366)
Q Consensus       127 ~~~~~~l~~~~~~ll~~~~~~~~~~~~~~~~~l~~i~~~~g~~~~~~--~~sl~~i~~~~g~~~~G~lsD~~grr~~~~R  204 (366)
                      .++++.+++.+|.++.+++..+.+........+-..+...||+...+  ...+..+++++|..+.|.+.||..+-+..  
T Consensus       257 ~si~~~~~n~~F~il~~~ygi~~g~F~~l~~~l~~~l~~sgY~~~~aG~ig~l~iv~Gmlga~~~gii~Dktk~fk~~--  334 (480)
T KOG2563|consen  257 KSIKSCFKNRQFIILAICYGIGLGLFNSLSTLLNLALCPSGYEGVFAGYIGALMIVAGMLGALASGIIADKTKKFKLT--  334 (480)
T ss_pred             HHHHHHHcCccHHHHHHHHhhhHHHHHHHHHHhhhccccccCCccccchhHHHHHHHHHHHHHHHHhhhhhhhhHHHH--
Confidence            35778899999999999888887777666666665666678875333  66666778899999999999998543322  


Q ss_pred             hHHHHHHHHHHHHH-HHHHH----hcchhHHHHHHHHHHHHhhhhhhhHHHHHHHhhCCCchhhHHHHHHhHhhhhHHHh
Q 017795          205 PVAMAVAQVVMAFA-LLYYA----IGWPGEIYVTTVLVGLSYGAHWAIVPAAASELFGLKSFGALYNFLTLASPAGSLIF  279 (366)
Q Consensus       205 ~~~~~~~~~~~~~~-~~l~~----~~~~~~l~~~~~l~G~~~g~~~~~~~~~~se~f~~~~~g~~~g~~~~~~~~G~~i~  279 (366)
                        . .+......++ +.++.    ......++....+.|++..+..++..-+..|.--+..=++..|+.++.+.+-+.++
T Consensus       335 --~-~v~~~~~~v~~~~l~~~t~~~~~~viv~~t~~~~g~~~~~~~Pig~ElgvE~TyPv~E~tSsGll~~~gq~f~~~~  411 (480)
T KOG2563|consen  335 --T-LVLYLFALVGTLMLLTCTLFLGDSVIVFTTCGLLGFFGTGYLPIGFELGVETTYPVAEGTSSGLLNLSGQIFGVIL  411 (480)
T ss_pred             --H-HHHHHHHHHHHHHHHHhhccCCceEehhhhHHHHHHhhcCCCCcceeeeeeeccccCCcccceeEEeehhHHHHHH
Confidence              1 1222222222 22221    12234567777888888888888777777777556666777888888777666653


Q ss_pred             hhhHHHHHhhhh
Q 017795          280 SGVIASGIYDYY  291 (366)
Q Consensus       280 gp~i~G~l~d~~  291 (366)
                       ..+.+...+..
T Consensus       412 -~~~~~~~~~~~  422 (480)
T KOG2563|consen  412 -VFIMGILAEDL  422 (480)
T ss_pred             -HHHHHHHhhcc
Confidence             55556555443

>KOG0254 consensus Predicted transporter (major facilitator superfamily) [General function prediction only]

Probab=98.03  E-value=5e-05  Score=77.52  Aligned_cols=181  Identities=17%  Similarity=0.157  Sum_probs=108.3

Q ss_pred             hhHHHHHHHHHHHhhhhHHHHHhcHHHHHHHhCCChh-HHHHHHHHHHHhhhhhhhhhhhhhhhhhccCchhHHHHHHHH
Q 017795          135 KADFLLLFFSLVLASGSGLTVIDNLGQICQSLGYADT-SIYVSMISIWNFLGRVGGGYFSEAIVRKFAYPRPVAMAVAQV  213 (366)
Q Consensus       135 ~~~~~ll~~~~~~~~~~~~~~~~~l~~i~~~~g~~~~-~~~~sl~~i~~~~g~~~~G~lsD~~grr~~~~R~~~~~~~~~  213 (366)
                      ++.++...+..+..........+..+++.+..|.+.. .....+.++.+.++..+.+++.||+|||+..      ..+..
T Consensus       294 ~~~~i~~~l~~fqq~tG~~~~~~Y~~~if~~~g~~~~~~~~~~~~~~v~~~~t~~~~~lvd~~gRr~ll------l~s~~  367 (513)
T KOG0254|consen  294 KRLIIGLLLQLFQQLTGINYVFYYSTTIFKSAGLKSDTFLASIILGVVNFLGTLVATYLVDRFGRRKLL------LFGAA  367 (513)
T ss_pred             HHHHHHHHHHHHHHHhCCceEEeehHHHHHhcCCCCchHHHHHHHHHHHHHHHHHHHHHHHHhccHHHH------HHhHH
Confidence            3334444444444444444566778889999888755 3356666777788888889999999998765      55556


Q ss_pred             HHHHHHHHHHh-----cc--------hhHHHHHHHHH-HHHhhhhhhhHHHHHHHhhCCCchhhHHHHHHhHhhhhHHHh
Q 017795          214 VMAFALLYYAI-----GW--------PGEIYVTTVLV-GLSYGAHWAIVPAAASELFGLKSFGALYNFLTLASPAGSLIF  279 (366)
Q Consensus       214 ~~~~~~~l~~~-----~~--------~~~l~~~~~l~-G~~~g~~~~~~~~~~se~f~~~~~g~~~g~~~~~~~~G~~i~  279 (366)
                      .+.++.++++.     ..        .....++..++ .....+..++.+.+.+|+||.+.|+.+.++......+.+++.
T Consensus       368 ~m~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~f~~g~g~v~w~~~sEifp~~~r~~~~s~~~~~n~~~~~~v  447 (513)
T KOG0254|consen  368 GMSICLVILAVVGVFALYYPNSSKGAGWLAIVFLCLFIFSFAIGWGPVPWVIVSEIFPLRLRSKGASLAVAVNWLWNFLI  447 (513)
T ss_pred             HHHHHHHHHHHHHHHhccCCCcccchhHHHHHHHHHHHHHHhcccccchhhhhhccCcHhHHhhhHHHHHHHHHHHHHHH
Confidence            66555555431     11        01112222222 222223345556688999999999999999888776666642


Q ss_pred             hhhHHHHHhhhhhhhhhhhhhhccCCCCCcccCCCCCCcccCCcchHHHHHHHHHHHHHHHH-HHHHHHhhcHHHH
Q 017795          280 SGVIASGIYDYYAEKQAGLLWKYNGNMLPVSFRDQETPTCLGSICYSITCGIMAGLCIIAMV-MSLIVVHRTKSVY  354 (366)
Q Consensus       280 gp~i~G~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~g~~~~~~~f~i~~~~~~~~~~-~~~~~~~~~r~~~  354 (366)
                           ...+.......                            .....|...++++.+..+ ...++.+++|.+.
T Consensus       448 -----~~~~~~~~~~~----------------------------~~~~~f~~f~~~~~~~~~~fv~~~~pETkg~s  490 (513)
T KOG0254|consen  448 -----SFFFPFITEAL----------------------------GIGGTFGYFGGICLLSLIIFVFFFVPETKGLT  490 (513)
T ss_pred             -----HHHHHHHHHhc----------------------------cccchHHHHHHHHHHHHHHHheEEcccCCCCc
Confidence                 22222211000                            024566777777777666 5666677776544

>KOG0255 consensus Synaptic vesicle transporter SVOP and related transporters (major facilitator superfamily) [General function prediction only]

Probab=98.00  E-value=0.00099  Score=67.92  Aligned_cols=101  Identities=12%  Similarity=0.139  Sum_probs=71.4

Q ss_pred             HHhhhhhhhhhhhhhhhhhccCchhHHHHHHHHHHHHHHHHHHh-cch-h--HHHHHHHHHHHHhhhhhhhHHHHHHHhh
Q 017795          181 WNFLGRVGGGYFSEAIVRKFAYPRPVAMAVAQVVMAFALLYYAI-GWP-G--EIYVTTVLVGLSYGAHWAIVPAAASELF  256 (366)
Q Consensus       181 ~~~~g~~~~G~lsD~~grr~~~~R~~~~~~~~~~~~~~~~l~~~-~~~-~--~l~~~~~l~G~~~g~~~~~~~~~~se~f  256 (366)
                      ....+....+...|++|||...      .....+.++++++.+. ... .  ...+...+..++.+..+.+.+...+|++
T Consensus       362 ~~~p~~~~~~~~~~~~gR~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~el~  435 (521)
T KOG0255|consen  362 VELPAYFRNGLLLPEFGRRPPL------FLSLFLAGIGLLLFGWLPDDLGGWLHWILPLLGKFFIGSAFNLIFLYSAELI  435 (521)
T ss_pred             HHhhHHHHHHHHHHHhCcHHHH------HHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence            4444555568888999887654      7777777777776552 222 2  2333344444556666777788999999


Q ss_pred             CCCchhhHHHHHHhHhhhhHHHhhhhHHHHHh
Q 017795          257 GLKSFGALYNFLTLASPAGSLIFSGVIASGIY  288 (366)
Q Consensus       257 ~~~~~g~~~g~~~~~~~~G~~i~gp~i~G~l~  288 (366)
                      |+..|..+.+..++...+|+++ +|.+.-...
T Consensus       436 pt~~r~~~~~~~~~~~~~~~i~-ap~~~~~~~  466 (521)
T KOG0255|consen  436 PTVVRNTAVGAISAAARLGSIL-APLFPLLLR  466 (521)
T ss_pred             cHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHh
Confidence            9999999999999999999996 787665443

>KOG2816 consensus Predicted transporter ADD1 (major facilitator superfamily) [General function prediction only]

Probab=97.91  E-value=5.7e-05  Score=75.90  Aligned_cols=131  Identities=15%  Similarity=0.175  Sum_probs=94.0

Q ss_pred             HHHHhhhhhhhhhhhhhhhhhccCchhHHHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHH--HhhhhhhhHHHHHHHhh
Q 017795          179 SIWNFLGRVGGGYFSEAIVRKFAYPRPVAMAVAQVVMAFALLYYAIGWPGEIYVTTVLVGL--SYGAHWAIVPAAASELF  256 (366)
Q Consensus       179 ~i~~~~g~~~~G~lsD~~grr~~~~R~~~~~~~~~~~~~~~~l~~~~~~~~l~~~~~l~G~--~~g~~~~~~~~~~se~f  256 (366)
                      .+..++-.++.|.+||++|||...      ........+.-.......    ++..++.++  ++++.++...+.++|..
T Consensus        72 ~~~~~i~s~~iG~lSD~~grk~~L------~~~~~~~~l~~~~~~~~~----~~~~~~~~l~g~~~~~~s~~~a~vadis  141 (463)
T KOG2816|consen   72 GLLTLISSPLIGALSDRYGRKVVL------LLPLFGTILPALCLLFQG----YWFFLLLGLSGGFSAIFSVGFAYVADIS  141 (463)
T ss_pred             HHHHHHHHhhhHHhhhhhhhhhhH------HHHHHHHHHhHHHHHHHH----HHHhhhcccccchhhhhhhhhhheeecc
Confidence            566778889999999999998655      333333333322222222    222224333  34456677788899999


Q ss_pred             CCCchhhHHHHHHhHhhhhHHHhhhhHHHHHhhhhhhhhhhhhhhccCCCCCcccCCCCCCcccCCcchHHHHHHHHHHH
Q 017795          257 GLKSFGALYNFLTLASPAGSLIFSGVIASGIYDYYAEKQAGLLWKYNGNMLPVSFRDQETPTCLGSICYSITCGIMAGLC  336 (366)
Q Consensus       257 ~~~~~g~~~g~~~~~~~~G~~i~gp~i~G~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~g~~~~~~~f~i~~~~~  336 (366)
                      ..++|...+|+++.....+..+ +|.+++++....+                                +..+|++.++..
T Consensus       142 ~~~~R~~~~gll~~~~~~~~~~-~p~~~~~~~~~~~--------------------------------~a~~f~ia~~~~  188 (463)
T KOG2816|consen  142 SEEERSSSIGLLSGTFGAGLVI-GPALGGYLVKFLG--------------------------------IALVFLIAAASG  188 (463)
T ss_pred             chhHHHHHHHHHHHHHHHHHhH-HHHHHHHHHHhcC--------------------------------chHHHHHHHHHH
Confidence            9999999999999988888886 9999999988766                                888999999888


Q ss_pred             HHHHHHHHHHHhhcHH
Q 017795          337 IIAMVMSLIVVHRTKS  352 (366)
Q Consensus       337 ~~~~~~~~~~~~~~r~  352 (366)
                      +++.+-.+++.+++..
T Consensus       189 ~~~~~y~~~~l~Esl~  204 (463)
T KOG2816|consen  189 ILSLLYMLLFLPESLQ  204 (463)
T ss_pred             HHHHHHHhhccccccC
Confidence            8877777777766443

>COG0477 ProP Permeases of the major facilitator superfamily [Carbohydrate transport and metabolism / Amino acid transport and metabolism / Inorganic ion transport and metabolism / General function prediction only]

Probab=97.91  E-value=0.00087  Score=60.77  Aligned_cols=129  Identities=17%  Similarity=0.202  Sum_probs=88.7

Q ss_pred             HHhcHHHHHHHhCCCh----hHHHHHHHHHHHhhhhhhhhhhhhhhhhhccCchhHHHHHHHHHHHHHHHHHH-hcc--h
Q 017795          155 VIDNLGQICQSLGYAD----TSIYVSMISIWNFLGRVGGGYFSEAIVRKFAYPRPVAMAVAQVVMAFALLYYA-IGW--P  227 (366)
Q Consensus       155 ~~~~l~~i~~~~g~~~----~~~~~sl~~i~~~~g~~~~G~lsD~~grr~~~~R~~~~~~~~~~~~~~~~l~~-~~~--~  227 (366)
                      .....+.+..+.+.+.    .....+...+...++.+..|.++||+|||+..      ..+.....++.++.. ..+  .
T Consensus        21 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~------~~~~~~~~~~~~~~~~~~~~~~   94 (338)
T COG0477          21 LSPALPLLLSTLSLSSGRLLYGLLLSAFFLGYAIGSLLAGPLGDRYGRRKVL------IIGLLLFLLGTLLLALAPNVGL   94 (338)
T ss_pred             HHHHHHHHHHHcCCCchhHHHHHHHHHHHHHHHHHhhhhhhccccccchHHH------HHHHHHHHHHHHHHHhCccchH
Confidence            4445666667666554    22377777788888889999999999887322      333322233323322 222  4


Q ss_pred             hHHHHHHHHHHHHhhhhhhhHHHHHHHhhCC-CchhhHHHHHHh-HhhhhHHHhhhhHHHHHhhh
Q 017795          228 GEIYVTTVLVGLSYGAHWAIVPAAASELFGL-KSFGALYNFLTL-ASPAGSLIFSGVIASGIYDY  290 (366)
Q Consensus       228 ~~l~~~~~l~G~~~g~~~~~~~~~~se~f~~-~~~g~~~g~~~~-~~~~G~~i~gp~i~G~l~d~  290 (366)
                      ..+++..++.|++.+...+...++++|.++. ++++...+.... ...+|..+ +|.+++.+.+.
T Consensus        95 ~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~  158 (338)
T COG0477          95 ALLLILRLLQGLGGGGLLPVASALLSEWFPEATERGLAVGLVTLGAGALGLAL-GPLLAGLLLGA  158 (338)
T ss_pred             HHHHHHHHHHHhhhHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHH
Confidence            4566667778888888888899999999987 678888888888 56777775 88888877766

>PF03092 BT1: BT1 family; InterPro: IPR004324 Members of this family are transmembrane proteins

Probab=97.90  E-value=0.00027  Score=70.69  Aligned_cols=159  Identities=19%  Similarity=0.213  Sum_probs=107.1

Q ss_pred             hcHHHHHHHhCCChhHH-HHHHHHHHHhhhhhhhhhhhhhhhhhccCchhHHHHHHHHHHHHHHHHHH-hc----chhHH
Q 017795          157 DNLGQICQSLGYADTSI-YVSMISIWNFLGRVGGGYFSEAIVRKFAYPRPVAMAVAQVVMAFALLYYA-IG----WPGEI  230 (366)
Q Consensus       157 ~~l~~i~~~~g~~~~~~-~~sl~~i~~~~g~~~~G~lsD~~grr~~~~R~~~~~~~~~~~~~~~~l~~-~~----~~~~l  230 (366)
                      ...+.+.+++|.++++. ......-......++.|.+||-+-- ..++|+..+.++.++.+++.+.++ ..    +....
T Consensus        11 ~~~~~l~~~l~ls~~~~~~~~~~~~lPw~~Kp~~g~lsD~~pi-~G~rr~~Y~~i~~~~~~~~~~~~~~~~~~~~s~~~~   89 (433)
T PF03092_consen   11 AIYPFLKDDLGLSPAQLQRLSSLASLPWSIKPLYGLLSDSFPI-FGYRRKPYMIIGWLLGAVSALVLALLPASESSAAIA   89 (433)
T ss_pred             HHHHHHHHHcCCCHHHHHHHHHHHhCchHHhhhHHhhcccccc-cCCcchHHHHHHHHHHHHHHHHHHhcccccchhhhH
Confidence            34556677899998775 3333333445678999999999732 123455555666666654444433 11    22344


Q ss_pred             HHHHHHHHHHhhhhhhhHHHHHHHhhCCC--chhhHHHHHHhHhhhhHHHhhhhHHHHHhhhhhhhhhhhhhhccCCCCC
Q 017795          231 YVTTVLVGLSYGAHWAIVPAAASELFGLK--SFGALYNFLTLASPAGSLIFSGVIASGIYDYYAEKQAGLLWKYNGNMLP  308 (366)
Q Consensus       231 ~~~~~l~G~~~g~~~~~~~~~~se~f~~~--~~g~~~g~~~~~~~~G~~i~gp~i~G~l~d~~~~~~~~~~~~~~~~~~~  308 (366)
                      .+..++..+|+...-.+.=+.+.|.-..+  .+|...+.......+|+++ +..+.|.+.+..+                
T Consensus        90 ~~~l~la~~g~a~~DV~aDa~vvE~~~~~p~~~g~lqS~~~~~~~~G~lv-~~~l~G~l~~~~~----------------  152 (433)
T PF03092_consen   90 VVLLFLASFGYAFADVAADALVVELARREPESRGDLQSFVWGVRSVGSLV-GSLLSGPLLDSFG----------------  152 (433)
T ss_pred             HHHHHHHHHHHHHHHHhhhHHHHHHhhcCCchhHHHHHHHHHHHHHHHHH-HHHhhhhhhhcCC----------------
Confidence            45566667777777777778888876332  3778888888888899996 8889999988776                


Q ss_pred             cccCCCCCCcccCCcchHHHHHHHHHHHHHHHHHHHHHHhh
Q 017795          309 VSFRDQETPTCLGSICYSITCGIMAGLCIIAMVMSLIVVHR  349 (366)
Q Consensus       309 ~~~~~~~~~~c~g~~~~~~~f~i~~~~~~~~~~~~~~~~~~  349 (366)
                                      ++..|.+.+.+..+..+..+.+..+
T Consensus       153 ----------------~~~~f~i~~~~~~l~~~~~~~~~~e  177 (433)
T PF03092_consen  153 ----------------PQGVFLISAALPLLMLIVALFLLEE  177 (433)
T ss_pred             ----------------CeEEehHHHHHHHHHHHHHHHhhhh
Confidence                            7778888887777766666666554

Several are Leishmania putative proteins that are thought to be pteridine transporters [, ]. This family also contains five putative Arabidopsis thaliana proteins of unknown function as well as two predicted prokaryotic proteins (from the cyanobacteria Synechocystis and Synechococcus).

>COG2211 MelB Na+/melibiose symporter and related transporters [Carbohydrate transport and metabolism]

Probab=97.90  E-value=0.00042  Score=69.22  Aligned_cols=136  Identities=15%  Similarity=0.133  Sum_probs=98.7

Q ss_pred             HhcHHHHH-HHhCCChhHH--HHHHHHHHHhhhhhhhhhhhhhhhhhccCchhHHHHHHHHHHHHHHHHHHhcc----hh
Q 017795          156 IDNLGQIC-QSLGYADTSI--YVSMISIWNFLGRVGGGYFSEAIVRKFAYPRPVAMAVAQVVMAFALLYYAIGW----PG  228 (366)
Q Consensus       156 ~~~l~~i~-~~~g~~~~~~--~~sl~~i~~~~g~~~~G~lsD~~grr~~~~R~~~~~~~~~~~~~~~~l~~~~~----~~  228 (366)
                      ..++..+. ...|.+...+  ...+.-++.++.-|+.|.++||..+|+...||+++..+..+..+..+++...+    ..
T Consensus        32 ~~yLl~fYTdv~Gis~~~aG~iflv~RiiDAi~DP~~G~i~D~t~~r~GrfRP~lL~g~ip~~i~~~l~F~~p~~~~~~k  111 (467)
T COG2211          32 VLYLLFFYTDVFGLSAALAGTIFLVARIIDAITDPIMGFIVDRTRSRWGRFRPWLLWGAIPFAIVAVLLFITPDFSMTGK  111 (467)
T ss_pred             HHHHHHHHhcccCCcHHHHHHHHHHHHHHHHHhcchheeeecccccccccccHHHHHHhHHHHHHHHHHHcCCCcccCcc
Confidence            34444444 4578888765  66666788999999999999999888888888887777766666666654332    12


Q ss_pred             --HHHHHHHHHHHHhhhhhhhHHHHHHHhhC-CCchhhHHHHHHhHhhhhHHHhhhhHHHHHhhhhh
Q 017795          229 --EIYVTTVLVGLSYGAHWAIVPAAASELFG-LKSFGALYNFLTLASPAGSLIFSGVIASGIYDYYA  292 (366)
Q Consensus       229 --~l~~~~~l~G~~~g~~~~~~~~~~se~f~-~~~~g~~~g~~~~~~~~G~~i~gp~i~G~l~d~~~  292 (366)
                        ..++.-.+.++++........++.+++-. +++|....+.=.....+|+.+ ...+.+.+....+
T Consensus       112 ~~ya~vtY~l~~l~YT~vniPy~al~~~iT~d~~ER~~l~s~R~~~~~~g~~l-~~~~~~plv~~~g  177 (467)
T COG2211         112 LIYALVTYMLLGLGYTLVNIPYGALGPEITQDPQERASLTSWRMVFASLGGLL-VAVLFPPLVKLFG  177 (467)
T ss_pred             hHHHHHHHHHHHHHHHheeCchhhcchhhcCCHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHhC
Confidence              23445567788888888888888888864 467999999988888888776 4566666665554

>KOG0253 consensus Synaptic vesicle transporter SV2 (major facilitator superfamily) [General function prediction only]

Probab=97.87  E-value=0.00036  Score=67.22  Aligned_cols=132  Identities=13%  Similarity=0.092  Sum_probs=92.8

Q ss_pred             HHHHHHHHHhhhhhhhhhhhhhhhhhccCchhHHHHHHHHHHHHHHHHHH-hcchhHHHHHHHHHHHHhhhhhhhHHHHH
Q 017795          174 YVSMISIWNFLGRVGGGYFSEAIVRKFAYPRPVAMAVAQVVMAFALLYYA-IGWPGEIYVTTVLVGLSYGAHWAIVPAAA  252 (366)
Q Consensus       174 ~~sl~~i~~~~g~~~~G~lsD~~grr~~~~R~~~~~~~~~~~~~~~~l~~-~~~~~~l~~~~~l~G~~~g~~~~~~~~~~  252 (366)
                      +..-...+..+|...||.++|++|||+..      ...+.+.++...+-. ..+...+.+...+.|+|.|+ .+...++-
T Consensus       118 lt~~v~~gmllga~~w~l~~d~~grr~~f------~~T~l~t~v~~~is~~spnf~~L~~f~~l~~~g~gg-~pv~~~~y  190 (528)
T KOG0253|consen  118 LTLSVFLGMLVGAMVWGLSADTIGRRKGF------NLTFLVTGVFGVISGASPNFASLCVFRALWGFGVGG-LPVDSAIY  190 (528)
T ss_pred             HHHHHHhhhhhhhhhhheehhhhhcchhh------hhhHHHHHHHHHhhcCCCCeehhhHHHHHHhccCCC-ccHhHHHH
Confidence            44445566678999999999999999877      444444444333322 44556788889999999998 77777788


Q ss_pred             HHhhCCCchhhHHHHHHhHhhhhHHHhhhhHHHHHhhhhhhhhhhhhhhccCCCCCcccCCCCCCcccCCcchHHHHHHH
Q 017795          253 SELFGLKSFGALYNFLTLASPAGSLIFSGVIASGIYDYYAEKQAGLLWKYNGNMLPVSFRDQETPTCLGSICYSITCGIM  332 (366)
Q Consensus       253 se~f~~~~~g~~~g~~~~~~~~G~~i~gp~i~G~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~g~~~~~~~f~i~  332 (366)
                      .|..|..+++...-.. ..+.+|... ...++=......|                                |||-+..+
T Consensus       191 le~lp~~~r~~~~V~~-~~waig~v~-ea~law~vm~~~g--------------------------------wr~~l~~~  236 (528)
T KOG0253|consen  191 LEFLPSSHRWLLTVMS-FFWAIGQVF-EALLAWGVMSNFG--------------------------------WRYLLFTS  236 (528)
T ss_pred             HHhccCcCCCcchhHH-HHHHHHHHH-HHHHHHHHHHhhh--------------------------------HHHHHHHH
Confidence            8888878887766655 778888884 5555555555555                                99887777


Q ss_pred             HHHHHHHHHHHHHH
Q 017795          333 AGLCIIAMVMSLIV  346 (366)
Q Consensus       333 ~~~~~~~~~~~~~~  346 (366)
                      ..-..+.+..+.++
T Consensus       237 ~~pl~~~a~f~~w~  250 (528)
T KOG0253|consen  237 STPLMFAARFLVWV  250 (528)
T ss_pred             HhHHHHHHHHHhhc
Confidence            75555555555554

>PF06609 TRI12: Fungal trichothecene efflux pump (TRI12); InterPro: IPR010573 This family consists of several fungal specific trichothecene efflux pump proteins

Probab=97.87  E-value=0.00098  Score=68.81  Aligned_cols=155  Identities=15%  Similarity=0.073  Sum_probs=98.9

Q ss_pred             HHHHhhh-hHHHHHHHHHHHhhhhHHHHHhcHHHHHHH-hCCChh---HH--HHHHHHHHHhhhhhhhhhhhhhhhhhcc
Q 017795          129 LPQALMK-ADFLLLFFSLVLASGSGLTVIDNLGQICQS-LGYADT---SI--YVSMISIWNFLGRVGGGYFSEAIVRKFA  201 (366)
Q Consensus       129 ~~~~l~~-~~~~ll~~~~~~~~~~~~~~~~~l~~i~~~-~g~~~~---~~--~~sl~~i~~~~g~~~~G~lsD~~grr~~  201 (366)
                      ..+++++ +.|+...+..++.....+......|+.... ++-+..   ..  .....+++..+|.++.|.+.-+++|-  
T Consensus       302 P~~Lf~~~r~~~~~lvi~fi~G~~~~s~~~l~p~~~~~vf~~d~~~~~~~~~~s~~~~fg~~~g~~i~g~l~~~ir~~--  379 (599)
T PF06609_consen  302 PHRLFKDRRGFAALLVISFISGMNFFSVNILWPQQVVNVFGSDPISITEIGWISSPVGFGSCAGAVILGLLFSKIRHI--  379 (599)
T ss_pred             CHHHhccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCCcccceeehhhhhHHHHHHHHHHHHHHHHHHccch--
Confidence            4567776 456665555555555555565666766554 444332   12  45566777788888888888666432  


Q ss_pred             CchhHHHHHHHHHHHHHHHHHH---hcchhHHHHHHHHHHHHhhhhhhhHHHHHHHhhCCCchhhHHHHHHhHhhhhHHH
Q 017795          202 YPRPVAMAVAQVVMAFALLYYA---IGWPGEIYVTTVLVGLSYGAHWAIVPAAASELFGLKSFGALYNFLTLASPAGSLI  278 (366)
Q Consensus       202 ~~R~~~~~~~~~~~~~~~~l~~---~~~~~~l~~~~~l~G~~~g~~~~~~~~~~se~f~~~~~g~~~g~~~~~~~~G~~i  278 (366)
                        | +.+.++.+++.+++.+++   ..+....+...++.|++.|....+...++.-..+.++.|++.++....-.+|+.+
T Consensus       380 --K-w~li~~~~~~ta~~Gama~~~~~n~~~~i~~~~l~g~giG~~~~~~~~~~ql~~p~~~ig~a~gL~~s~R~~GGsI  456 (599)
T PF06609_consen  380 --K-WQLIFGSVLMTAFCGAMAAVRPDNKNAAIAFLVLAGFGIGGILVPAIVIAQLIVPDEDIGTATGLTGSIRSIGGSI  456 (599)
T ss_pred             --h-HHHHHHHHHHHHHHHHHHHccCCCcchHHHHHHHHHHhHHHHHHHHHHeeEeeeCchHHHHHHHHHHHHHHHhhHH
Confidence              2 334445555554434443   2344556677788888888766655555555677788999999999998888886


Q ss_pred             hhhhHHHHHhh
Q 017795          279 FSGVIASGIYD  289 (366)
Q Consensus       279 ~gp~i~G~l~d  289 (366)
                       |.-+...++.
T Consensus       457 -g~aIy~~I~~  466 (599)
T PF06609_consen  457 -GYAIYNAIFT  466 (599)
T ss_pred             -HHHHHHHHHH
Confidence             7666655554

Many of the genes involved in trichothecene toxin biosynthesis in Fusarium sporotrichioides are present within a gene cluster. It has been suggested that TRI12 may play a role in F. sporotrichioides self-protection against trichothecenes [].

>KOG2325 consensus Predicted transporter/transmembrane protein [General function prediction only]

Probab=97.85  E-value=0.00017  Score=72.21  Aligned_cols=186  Identities=18%  Similarity=0.153  Sum_probs=116.6

Q ss_pred             HHHHHHHHHHhhhhHHHHHhcHHHHHHHhCCChh--H--HHHHHHHHHHhhhhhhhhhhhhhhhh-hccCchhHHHHHHH
Q 017795          138 FLLLFFSLVLASGSGLTVIDNLGQICQSLGYADT--S--IYVSMISIWNFLGRVGGGYFSEAIVR-KFAYPRPVAMAVAQ  212 (366)
Q Consensus       138 ~~ll~~~~~~~~~~~~~~~~~l~~i~~~~g~~~~--~--~~~sl~~i~~~~g~~~~G~lsD~~gr-r~~~~R~~~~~~~~  212 (366)
                      .|+..+..+........+....-++.++++-+.+  -  ..++..+++..++.+..|+.+.|.++ |+.+      .++.
T Consensus        36 i~l~~~~sfl~~v~~sI~~~s~wpYl~~lD~~A~~~ffG~viaa~slg~~i~~liF~~Ws~k~~~~k~Pl------i~s~  109 (488)
T KOG2325|consen   36 IYLALLNSFLVAVQFSIYLTSMWPYLQKLDPTATATFFGLVIAASSLGHAIFSLIFGIWSNKTGSVKKPL------IVSF  109 (488)
T ss_pred             HHHHHHHHHHHhhhheEEEeecchhhhhcCCCCCcchhhHHHHHHHHHHHhcchhhcccccccCCcccCH------HHHH
Confidence            3444444444433333333334456666443332  2  27888999999999999999999875 3333      6788


Q ss_pred             HHHHHHHHHHH-h----c-chhHHHHHHHHHHHHhhhhhhhHHHHHHHhhCCCchhhHHHHHHhHhhhhHHHhhhhHHHH
Q 017795          213 VVMAFALLYYA-I----G-WPGEIYVTTVLVGLSYGAHWAIVPAAASELFGLKSFGALYNFLTLASPAGSLIFSGVIASG  286 (366)
Q Consensus       213 ~~~~~~~~l~~-~----~-~~~~l~~~~~l~G~~~g~~~~~~~~~~se~f~~~~~g~~~g~~~~~~~~G~~i~gp~i~G~  286 (366)
                      +++++|.+++. .    . ..+.+++++++.|+|.|. .+..=+++++..-.+.|.++++..+.+..+|..+ ||.+...
T Consensus       110 ii~~~g~llY~~l~~~~~~~~y~mL~~R~l~Gvg~~n-~a~lR~Y~a~~s~~~dR~rA~a~~~~~~vlg~il-Gp~~q~~  187 (488)
T KOG2325|consen  110 LIAIIGNLLYLALAYVPNGVKYLMLVARILTGVGVGN-FAVLRAYIADASTVEDRPRAFAATSGGFVLGIIL-GPTIQLA  187 (488)
T ss_pred             HHHHHHHHHHHHHHhcccchHHHHHHHHHHcCcCccc-HHHHHHHHHhccCccchHHHHHHhhhHHHHHHHH-hHHHHHH
Confidence            88888888762 1    2 345778899999999876 5777788888776777777777777766666664 6654433


Q ss_pred             HhhhhhhhhhhhhhhccCCCCCcccCCCCCCcccCCcchHHHHHHHHHHHHHHHHHHHHHHhhc
Q 017795          287 IYDYYAEKQAGLLWKYNGNMLPVSFRDQETPTCLGSICYSITCGIMAGLCIIAMVMSLIVVHRT  350 (366)
Q Consensus       287 l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~g~~~~~~~f~i~~~~~~~~~~~~~~~~~~~  350 (366)
                      +.. -+.+.--        ..+          -.-=+-|...-|+++.++++.++...++.++.
T Consensus       188 f~~-Lg~~G~~--------i~~----------~~~~n~YTap~w~m~i~~i~~~v~i~~~f~E~  232 (488)
T KOG2325|consen  188 FTP-LGEKGFM--------ILP----------GLIFNMYTAPAWLMAILWIIYIVIILFFFKEV  232 (488)
T ss_pred             Hhh-hcCCceE--------EcC----------cceEEecchHHHHHHHHHHHHHHHHHhheeec
Confidence            221 1100000        000          00001377888899999999888877776664

>KOG1330 consensus Sugar transporter/spinster transmembrane protein [Carbohydrate transport and metabolism]

Probab=97.62  E-value=0.00016  Score=71.32  Aligned_cols=138  Identities=15%  Similarity=0.107  Sum_probs=79.3

Q ss_pred             HHHhcHHHHHH----HhCCChh--HHHHHHHHHHHhhhhhhhhhhhhhhhhhccC-chh----HHHHHHHHHHHHHHHHH
Q 017795          154 TVIDNLGQICQ----SLGYADT--SIYVSMISIWNFLGRVGGGYFSEAIVRKFAY-PRP----VAMAVAQVVMAFALLYY  222 (366)
Q Consensus       154 ~~~~~l~~i~~----~~g~~~~--~~~~sl~~i~~~~g~~~~G~lsD~~grr~~~-~R~----~~~~~~~~~~~~~~~l~  222 (366)
                      ++..|.|.+..    -.|++..  .++..+...++.+|.+.+|.++|++.|+..- .|.    .....+..+.+....++
T Consensus       262 s~sww~p~~~~~~~~~~~~~~~~~~ifg~vt~~~G~lGvl~Ggiisd~~~~~~~~~~~~~~~q~~~~~g~~~s~~~L~~~  341 (493)
T KOG1330|consen  262 SLSWWAPAFIYYSYELIGFDHNATLIFGGVTCAGGSLGVLFGGIISDKLSRIFPNSGTLRASQLSAALGAPLSIPFLFLF  341 (493)
T ss_pred             ccchhhhhHHHHHHHHhCCccccchhhhhHHHhhchhhheehHHHHHHHHHhcccccchhHHHHHHhhhhhHHHHHHHHH
Confidence            34455555443    2344432  2388888899999999999999998763321 011    11111222222222222


Q ss_pred             HhcchhHHHHHHHHHHHH---hhhhhhhHHHHHHHhhCCCchhhHHHHHHhHhhh-hHHHhhhhHHHHHhhhhh
Q 017795          223 AIGWPGEIYVTTVLVGLS---YGAHWAIVPAAASELFGLKSFGALYNFLTLASPA-GSLIFSGVIASGIYDYYA  292 (366)
Q Consensus       223 ~~~~~~~l~~~~~l~G~~---~g~~~~~~~~~~se~f~~~~~g~~~g~~~~~~~~-G~~i~gp~i~G~l~d~~~  292 (366)
                      ........+.+.+++.+|   .-..|+....+..+..++++|.+++++..+..-+ |.+ -+|++.|.+.|+--
T Consensus       342 ~~~~~~s~~~~~il~~~g~~~~~~~~a~n~~i~l~vV~p~~Rt~a~a~~~~~~h~fgd~-~~p~ivGilsd~l~  414 (493)
T KOG1330|consen  342 PAFTSSSMIFGLILFLVGETISWFNWATNNPIFLEVVPPSRRTTAYALDTVFEHIFGDA-ASPYIVGILSDKLR  414 (493)
T ss_pred             HhhhhHHHHHHHHHHHHHHHHHhcccccccceeeEecCcccccHHHHHHHHHHHHhccC-CCcceehhHHHHhh
Confidence            221222333333333333   2233555566778889999999999998776554 555 36779999998753

>TIGR00805 oat sodium-independent organic anion transporter

Probab=97.61  E-value=0.0017  Score=68.15  Aligned_cols=72  Identities=15%  Similarity=0.238  Sum_probs=58.2

Q ss_pred             CHHHHhhhhHHHHHHHHHHHhhhhHHHHHhcHHHHHHH-hCCChhHH--HHHHHHH-HHhhhhhhhhhhhhhhhhh
Q 017795          128 TLPQALMKADFLLLFFSLVLASGSGLTVIDNLGQICQS-LGYADTSI--YVSMISI-WNFLGRVGGGYFSEAIVRK  199 (366)
Q Consensus       128 ~~~~~l~~~~~~ll~~~~~~~~~~~~~~~~~l~~i~~~-~g~~~~~~--~~sl~~i-~~~~g~~~~G~lsD~~grr  199 (366)
                      .++++++++.+|...+..++.......+..++|.+.++ +|++...+  +.++..+ +..+|.+++|+++||++.+
T Consensus       322 ~~~~Ll~n~~f~~~~l~~~~~~~~~~~~~~~lP~yl~~~~g~s~~~ag~l~~~~~i~~~~vG~~l~G~l~~r~~~~  397 (633)
T TIGR00805       322 IIKRLLCNPIYMLVILAQVIDSLAFNGYITFLPKYLENQYGISSAEANFLIGVVNLPAAGLGYLIGGFIMKKFKLN  397 (633)
T ss_pred             HHHHHHcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcHHHHHHHhhhhhhhHHHHHHhhhhheeeeeccc
Confidence            35678899999999999888888888899999999875 89987766  4444454 5578999999999999754

Proteins of the OAT family catalyze the Na+-independent facilitated transport of organic anions such as bromosulfobromophthalein and prostaglandins as well as conjugated and unconjugated bile acids (taurocholate and cholate, respectively). These transporters have been characterized in mammals, but homologues are present in C. elegans and A. thaliana. Some of the mammalian proteins exhibit a high degree of tissue specificity. For example, the rat OAT is found at high levels in liver and kidney and at lower levels in other tissues. These proteins possess 10-12 putative a-helical transmembrane spanners. They may catalyze electrogenic anion uniport or anion exchange.

>PF05978 UNC-93: Ion channel regulatory protein UNC-93; InterPro: IPR010291 The proteins in this family are represented by UNC-93 from Caenorhabditis elegans

Probab=97.37  E-value=0.0055  Score=52.44  Aligned_cols=108  Identities=7%  Similarity=0.055  Sum_probs=77.7

Q ss_pred             HHHHHHHHHhhhhhhhhhhhhhhhhhccCchhHHHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHhhhhhhhHHHHHH
Q 017795          174 YVSMISIWNFLGRVGGGYFSEAIVRKFAYPRPVAMAVAQVVMAFALLYYAIGWPGEIYVTTVLVGLSYGAHWAIVPAAAS  253 (366)
Q Consensus       174 ~~sl~~i~~~~g~~~~G~lsD~~grr~~~~R~~~~~~~~~~~~~~~~l~~~~~~~~l~~~~~l~G~~~g~~~~~~~~~~s  253 (366)
                      -.++......+..++.+.+.+++|.|+.+      .++.+..++-.......+...++.+.++.|++.+..|+....++.
T Consensus        42 slai~Y~~~~~s~l~~P~iv~~lg~K~sm------~lg~~~y~~y~~~~~~~~~~~l~~~s~l~G~~~a~lW~aqg~ylt  115 (156)
T PF05978_consen   42 SLAILYGSFAISCLFAPSIVNKLGPKWSM------ILGSLGYAIYIASFFYPNSYTLYPASALLGFGAALLWTAQGTYLT  115 (156)
T ss_pred             HHHHHHHHHHHHHHhHHHHHHHHhhHHHH------HHHHHHHHHHHHHHHhhhHHHHHHHHHHHhhhhHHhhHhhhHHHH
Confidence            45555556667777788888999887654      555444443333333455677889999999999999999999999


Q ss_pred             HhhCCCchhhHHHHHHhHhhhhHHHhhhhHHHHHh
Q 017795          254 ELFGLKSFGALYNFLTLASPAGSLIFSGVIASGIY  288 (366)
Q Consensus       254 e~f~~~~~g~~~g~~~~~~~~G~~i~gp~i~G~l~  288 (366)
                      +....+.+++..++.......+.++ |.++.-.++
T Consensus       116 ~~s~~~~~~~~~~ifw~i~~~s~i~-G~~~~~~~~  149 (156)
T PF05978_consen  116 SYSTEETIGRNTGIFWAIFQSSLIF-GNLFLFFIF  149 (156)
T ss_pred             HcCCHHHHhhHHHHHHHHHHHHHHH-HHHHHHHHH
Confidence            9888888999888887777776664 655544443

UNC-93 colocalizes with SUP-10 and SUP-9 within muscle cells. Genetic studies suggest that these three proteins forms complex that coordinates muscle contraction. The function of UNC-93 is not known but is most likely an ion channel regulatory protein [].

>PRK03612 spermidine synthase; Provisional

Probab=97.30  E-value=0.033  Score=57.06  Aligned_cols=142  Identities=19%  Similarity=0.216  Sum_probs=69.1

Q ss_pred             HHhhhhHHHHHhcHHHHH-HHhCCChhHH--HHHHHHHHHhhhhhhhhhhhhhhhhhccCchhHHHHHHHHHHHHHHHHH
Q 017795          146 VLASGSGLTVIDNLGQIC-QSLGYADTSI--YVSMISIWNFLGRVGGGYFSEAIVRKFAYPRPVAMAVAQVVMAFALLYY  222 (366)
Q Consensus       146 ~~~~~~~~~~~~~l~~i~-~~~g~~~~~~--~~sl~~i~~~~g~~~~G~lsD~~grr~~~~R~~~~~~~~~~~~~~~~l~  222 (366)
                      ++..++++.+-.....+. .-+|.+....  .++++.++..+|..++|++.++..++...   .-+.++.+......++.
T Consensus        24 f~sg~~~L~yEv~~~r~l~~~~G~s~~~~~~ii~~fl~glalGs~l~~~~~~~~~~~~~~---~e~~i~l~~~~~~~ll~  100 (521)
T PRK03612         24 FVCAACGLVYELLLGTLASYLLGDSVTQFSTVIGLMLFAMGVGALLSKYLLRDAAAGFVA---VELLLALLGGLSALILY  100 (521)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHH---HHHHHHHHHHHHHHHHH
Confidence            333444444433333333 2345554333  67777777778887777765333222211   00011111111111111


Q ss_pred             H-hcc--h--hHHHHHHHHHHHHhhhhhhhHHHHHHHhhCCCchhhHHHHHHhHhhhhHHHhhhhHHHHHhh-hhh
Q 017795          223 A-IGW--P--GEIYVTTVLVGLSYGAHWAIVPAAASELFGLKSFGALYNFLTLASPAGSLIFSGVIASGIYD-YYA  292 (366)
Q Consensus       223 ~-~~~--~--~~l~~~~~l~G~~~g~~~~~~~~~~se~f~~~~~g~~~g~~~~~~~~G~~i~gp~i~G~l~d-~~~  292 (366)
                      . ...  .  ...+...++.++..|+.+++..-+..+.. .++.|...|-++.+..+|+.+ |.++.|++.- ..|
T Consensus       101 ~~~~~~~~~~~~~~~~~~~~~~l~G~~~Pl~~~~~~~~~-~~~~g~~~g~ly~~ntlGa~~-G~l~~~~vLlp~lG  174 (521)
T PRK03612        101 AAFAFQGLSRLLLYVLVLLIGLLIGMEIPLLMRILQRIR-DQHLGHNVATVLAADYLGALV-GGLAFPFLLLPRLG  174 (521)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc-ccchhhhhhhhHhHHhHHHHH-HHHHHHHHHHHhcc
Confidence            1 111  1  12234445567777877766655544422 223556667777777778885 7777776654 444

>PF11700 ATG22: Vacuole effluxer Atg22 like; InterPro: IPR024671 Autophagy is a major survival mechanism in which eukaryotes recycle cellular nutrients during stress conditions

Probab=97.20  E-value=0.026  Score=57.26  Aligned_cols=145  Identities=11%  Similarity=0.015  Sum_probs=89.8

Q ss_pred             HHHHHHHHHhhhhhhhhhhhhhhhhhccCchhHHHHHHHHHHHHHHHHHHh--cchhHH-HHHHHHHHHHhhhhhhhHHH
Q 017795          174 YVSMISIWNFLGRVGGGYFSEAIVRKFAYPRPVAMAVAQVVMAFALLYYAI--GWPGEI-YVTTVLVGLSYGAHWAIVPA  250 (366)
Q Consensus       174 ~~sl~~i~~~~g~~~~G~lsD~~grr~~~~R~~~~~~~~~~~~~~~~l~~~--~~~~~l-~~~~~l~G~~~g~~~~~~~~  250 (366)
                      ..++..+...+-.|+.|.++|+-++|+.+     +.+..++..++..++..  .....+ .+..++.-++++.......+
T Consensus        75 ~~sis~l~~all~P~lGa~aD~~~~Rk~~-----l~~~~~~~~~~~~~l~~v~~~~~~~~~~l~iia~v~~~~~~vfyna  149 (477)
T PF11700_consen   75 ANSISGLLQALLAPFLGAIADYGGRRKRF-----LLIFTLLGVLATALLWFVSPGQWWLALVLFIIANVGYEASNVFYNA  149 (477)
T ss_pred             HHHHHHHHHHHHHHHHHHHHcccccchHH-----HHHHHHHHHHHHHHHHHhCcchHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            46666777788889999999988876543     33333333333333332  222222 22333334577777888889


Q ss_pred             HHHHhhCCCch--------------------------hhHHHHHHhHhhhhHHHhhhhHHHHHh-hhhhhhhhhhhhhcc
Q 017795          251 AASELFGLKSF--------------------------GALYNFLTLASPAGSLIFSGVIASGIY-DYYAEKQAGLLWKYN  303 (366)
Q Consensus       251 ~~se~f~~~~~--------------------------g~~~g~~~~~~~~G~~i~gp~i~G~l~-d~~~~~~~~~~~~~~  303 (366)
                      +.+|+-..+..                          +...|.....+.+|+.+ . ++...+. ...+..         
T Consensus       150 ~LP~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vS~~G~a~Gy~G~~v-~-l~i~l~~~~~~~~~---------  218 (477)
T PF11700_consen  150 YLPDLARPEPRVRAAREPSANGNISDSEYEAVDSLTRGRVSGLGWALGYIGGLV-A-LLISLLLVISPGST---------  218 (477)
T ss_pred             HhHhhcCCChhhhhhhhhhccCCCChhhhhhHHHhhhchhHHHHHHHHHHHHHH-H-HHHHHHHHHcCCCc---------
Confidence            99999988888                          89999988888899886 2 3333222 222100         


Q ss_pred             CCCCCcccCCCCCCcccCCcchHHHHHHHHHHHHHHHHHHHHHHhh
Q 017795          304 GNMLPVSFRDQETPTCLGSICYSITCGIMAGLCIIAMVMSLIVVHR  349 (366)
Q Consensus       304 ~~~~~~~~~~~~~~~c~g~~~~~~~f~i~~~~~~~~~~~~~~~~~~  349 (366)
                                     -.+..+.|.++.+.++..++-.+..++..++
T Consensus       219 ---------------~~~~~~~r~~~~~~a~ww~vfsiP~~~~~~~  249 (477)
T PF11700_consen  219 ---------------ASNTWAIRVAFLIVALWWLVFSIPLFLWLPD  249 (477)
T ss_pred             ---------------cccchhhhHHHHHHHHHHHHHHHHHHHhCCC
Confidence                           0111247889888888777666666555443

Atg22, Avt3 and Avt4 are partially redundant vacuolar effluxers, which mediate the efflux of leucine and other amino acids resulting from autophagy []. This family also includes other transporter proteins.

>PF12832 MFS_1_like: MFS_1 like family

Probab=97.18  E-value=0.0018  Score=48.49  Aligned_cols=53  Identities=13%  Similarity=0.160  Sum_probs=43.4

Q ss_pred             hhHHHHHhcHHHHHHHhCCChhHH--HHHHHHHHHhhhhhhhhhhhhhhhhhccC
Q 017795          150 GSGLTVIDNLGQICQSLGYADTSI--YVSMISIWNFLGRVGGGYFSEAIVRKFAY  202 (366)
Q Consensus       150 ~~~~~~~~~l~~i~~~~g~~~~~~--~~sl~~i~~~~g~~~~G~lsD~~grr~~~  202 (366)
                      ++...+...+|.+.++.|++..++  ..++..+...++.+++|.++||+++++..
T Consensus        14 ~~~g~~~Pfl~~~~~~~Gl~~~~iGil~~i~~~~~~~~~pl~g~laDk~~~~~~~   68 (77)
T PF12832_consen   14 AALGCLYPFLPLYLKQLGLSPSQIGILSAIRPLIRFLAPPLWGFLADKFGKRKVI   68 (77)
T ss_pred             HHHHHHHhhhhHhhhhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCccHHH
Confidence            333345667888899999999887  78888899999999999999999986544

>PRK15462 dipeptide/tripeptide permease D; Provisional

Probab=97.17  E-value=0.087  Score=53.59  Aligned_cols=119  Identities=14%  Similarity=0.069  Sum_probs=77.4

Q ss_pred             CCChhHH-HHHHHHHHHhhhhhhhhhhhhhhhhh-ccCchhHHHHHHHHHHHHHHHHHHh----------cchhHHHHHH
Q 017795          167 GYADTSI-YVSMISIWNFLGRVGGGYFSEAIVRK-FAYPRPVAMAVAQVVMAFALLYYAI----------GWPGEIYVTT  234 (366)
Q Consensus       167 g~~~~~~-~~sl~~i~~~~g~~~~G~lsD~~grr-~~~~R~~~~~~~~~~~~~~~~l~~~----------~~~~~l~~~~  234 (366)
                      |++-... +.++-.++-.+..|+.+++=.|..|| +..+.+.=+.+++++++++++++..          .++..+.+..
T Consensus       305 g~~ip~~~~qslNp~~ii~l~P~~a~lw~~l~~~~~~~s~~~Kfa~g~~~~g~~f~~l~~~~~~~~~~~~~s~~wl~~~~  384 (493)
T PRK15462        305 GYTVPTAMFQSINAFAVMLCGVFLAWVVKESVAGNRTVRIWGKFALGLGLMSAGFCILTLSARWSAMYGHSSLPLMVLGL  384 (493)
T ss_pred             ceeeCHHHHHhHhHHHHHHHHHHHHHHHHHHhcCCCCCCcHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCcCHHHHHHHH
Confidence            5443233 66777777777777777765666432 2112233357788888888766531          1223456667


Q ss_pred             HHHHHHhhhhhhhHHHHHHHhhCCCchhhHHHHHHhHh-hhhHHHhhhhHHHH
Q 017795          235 VLVGLSYGAHWAIVPAAASELFGLKSFGALYNFLTLAS-PAGSLIFSGVIASG  286 (366)
Q Consensus       235 ~l~G~~~g~~~~~~~~~~se~f~~~~~g~~~g~~~~~~-~~G~~i~gp~i~G~  286 (366)
                      ++.++|--...++..+.++++.|.+.+|..+|...+.. .+|..+ +..+++.
T Consensus       385 ~~~t~gEl~~sPvgls~~~~laP~~~~g~~mg~w~l~~~~~~~~~-~g~~~~~  436 (493)
T PRK15462        385 AVMGFAELFIDPVAMSQITRIEIPGVTGVLTGIYMLLSGAIANYL-AGVIADQ  436 (493)
T ss_pred             HHHHHHHHHHChHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHHH-HHHHHHH
Confidence            77788877778888999999999999999999986643 555554 4444443

>PF00854 PTR2: POT family; InterPro: IPR000109 This entry represents the POT (proton-dependent oligopeptide transport) family, which all appear to be proton dependent transporters

Probab=97.14  E-value=0.0026  Score=62.04  Aligned_cols=102  Identities=16%  Similarity=0.253  Sum_probs=81.4

Q ss_pred             HHHHHHHHHHHHHHH--h-c-ch------hHHHHHHHHHHHHhhhhhhhHHHHHHHhhCCC---chhhHHHHHHhHhhhh
Q 017795          209 AVAQVVMAFALLYYA--I-G-WP------GEIYVTTVLVGLSYGAHWAIVPAAASELFGLK---SFGALYNFLTLASPAG  275 (366)
Q Consensus       209 ~~~~~~~~~~~~l~~--~-~-~~------~~l~~~~~l~G~~~g~~~~~~~~~~se~f~~~---~~g~~~g~~~~~~~~G  275 (366)
                      ..+.++.++|++++.  . . ..      ..++++..++++|.|+.=+...+..+|.|..+   ++...++....+.++|
T Consensus         5 ~~g~~~~~~G~~ll~l~~~~~~~~~~~~~~~~~~gL~lia~G~G~~K~ni~~~~~dq~~~~~~~~~~~~F~~fY~~in~G   84 (372)
T PF00854_consen    5 LLGSIVYLLGHVLLTLSAIPPSLPSGIQLGLFYIGLALIAVGTGGIKPNISPFGADQYDEDDDSRRDSFFNWFYWGINIG   84 (372)
T ss_dssp             HHHHHHHHHHHHH--HHHTSSSC------CHHHHHHHHHHHHHHCCHHHHHHHHHHCSSTTTTTHHHHHHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHhHHHHhcchhhhhHHHHHHHHHHHHHHhccccccccHHHHHHHHhcccchhhhhhhHHHHHHHHhhh
Confidence            567777788887743  1 1 11      36889999999999999999999999999876   3788889999999999


Q ss_pred             HHHhhhhHHHHHhhhhhhhhhhhhhhccCCCCCcccCCCCCCcccCCcchHHHHHHHHHHHHHHHHHH
Q 017795          276 SLIFSGVIASGIYDYYAEKQAGLLWKYNGNMLPVSFRDQETPTCLGSICYSITCGIMAGLCIIAMVMS  343 (366)
Q Consensus       276 ~~i~gp~i~G~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~g~~~~~~~f~i~~~~~~~~~~~~  343 (366)
                      +++ ++.+.+++-+..+                                |.+.|.+.++..+++.+..
T Consensus        85 ~~~-~~~~~~~i~~~~~--------------------------------~~~~f~i~~~~~~~~~~~f  119 (372)
T PF00854_consen   85 SLF-SPTLVPYIQQNYG--------------------------------WFLGFGIPAIGMLLALIVF  119 (372)
T ss_dssp             HHH-HHHCCCHHHHCS---------------------------------HHHHHHHHHHHHHHHHHHH
T ss_pred             hHh-hcccchhhccccc--------------------------------hhhhhhHHHHHHHHHHHHH
Confidence            996 8999999998877                                9999998887776655543

The transport of peptides into cells is a well-documented biological phenomenon which is accomplished by specific, energy-dependent transporters found in a number of organisms as diverse as bacteria and humans. The POT family of proteins is distinct from the ABC-type peptide transporters and was uncovered by sequence analyses of a number of recently discovered peptide transport proteins []. These proteins that seem to be mainly involved in the intake of small peptides with the concomitant uptake of a proton []. These integral membrane proteins are predicted to comprise twelve transmembrane regions.; GO: 0005215 transporter activity, 0006857 oligopeptide transport, 0016020 membrane; PDB: 4APS_A 2XUT_C.

>KOG2615 consensus Permease of the major facilitator superfamily [General function prediction only]

Probab=97.08  E-value=0.0055  Score=59.40  Aligned_cols=124  Identities=10%  Similarity=0.113  Sum_probs=85.2

Q ss_pred             HHhCCChhHH--HHHHHHHHHhhhhhhhhhhhhhhhhhccCchhHHHHHHHHHHHHHHHHHH-hcchhHHHHHHHHHHHH
Q 017795          164 QSLGYADTSI--YVSMISIWNFLGRVGGGYFSEAIVRKFAYPRPVAMAVAQVVMAFALLYYA-IGWPGEIYVTTVLVGLS  240 (366)
Q Consensus       164 ~~~g~~~~~~--~~sl~~i~~~~g~~~~G~lsD~~grr~~~~R~~~~~~~~~~~~~~~~l~~-~~~~~~l~~~~~l~G~~  240 (366)
                      ..+||++.+.  +.+..++...+.+....+..|+...    .-...+...+.++...++++. ...+..++.+..+..++
T Consensus       290 ~rfg~ss~~~G~vl~~tGl~m~~~ql~~~~~l~~~~~----~~~a~l~~~l~~~vP~~llls~~~~~~~l~~~s~l~sf~  365 (451)
T KOG2615|consen  290 GRFGYSSMQQGKVLSTTGLLMLVIQLALVPILPRYKG----NIKAVLLFSLLLIVPAFLLLSLARTPVVLYLGSTLKSFS  365 (451)
T ss_pred             CccCCChhhheeeeehhhHHHHHHHHhcccccccccc----chhhHHHHHHHHHHHHHHHHhccccchhhhHHHHHHHHH
Confidence            4578887665  5555555555555544444454421    111223445555555555555 44566788888888888


Q ss_pred             hhhhhhhHHHHHHHhhCCCchhhHHHHHHhHhhhhHHHhhhhHHHHHhhhhh
Q 017795          241 YGAHWAIVPAAASELFGLKSFGALYNFLTLASPAGSLIFSGVIASGIYDYYA  292 (366)
Q Consensus       241 ~g~~~~~~~~~~se~f~~~~~g~~~g~~~~~~~~G~~i~gp~i~G~l~d~~~  292 (366)
                      .....+-...++....|.+.+|++.|+....+.++-++ ||.++|.+.....
T Consensus       366 ~A~~vt~Lt~Lv~~~~~~~qrG~~~Gi~~Sl~alaRai-GPlv~g~i~~Ws~  416 (451)
T KOG2615|consen  366 TASVVTCLTSLVHKYGPQSQRGTLNGIFRSLGALARAI-GPLVSGVIFSWSQ  416 (451)
T ss_pred             HHHhhHHHHHHHHhcCCcccchHHHHHHHHHHHHHHHh-hhhhhheeEEEec
Confidence            77766667778888888899999999999999999996 9999998876543

>KOG4686 consensus Predicted sugar transporter [Carbohydrate transport and metabolism]

Probab=97.00  E-value=0.00042  Score=64.52  Aligned_cols=148  Identities=16%  Similarity=0.139  Sum_probs=100.1

Q ss_pred             HHHHHHHHHHHhhhhHHHHHhcHHHHHHH----hCCChhHH--HHHHHHHHHhhhhhhhhhhhhhh-hhhccCchhHHHH
Q 017795          137 DFLLLFFSLVLASGSGLTVIDNLGQICQS----LGYADTSI--YVSMISIWNFLGRVGGGYFSEAI-VRKFAYPRPVAMA  209 (366)
Q Consensus       137 ~~~ll~~~~~~~~~~~~~~~~~l~~i~~~----~g~~~~~~--~~sl~~i~~~~g~~~~G~lsD~~-grr~~~~R~~~~~  209 (366)
                      +|..+.++.+.+.++...+. +-..+-.+    ...+.++.  .-+.++.-|.+-.+++|++.||. |-|...      .
T Consensus        42 r~m~lv~mc~lgfgsyfcyd-~p~alq~~fk~d~ni~~akftLlYsvYSwPNvVlcffgGflidr~fgir~gt------i  114 (459)
T KOG4686|consen   42 RFMALVFMCLLGFGSYFCYD-APGALQIDFKLDSNIEYAKFTLLYSVYSWPNVVLCFFGGFLIDRRFGIRLGT------I  114 (459)
T ss_pred             HHHHHHHHHHhcccceeecC-CchhhhhhhhcccccceeeeeeeeeeccCCCEEEeeecceeehhhhhhhHHH------H
Confidence            45555555556655544443 22222222    23333332  66777877888999999999984 554433      3


Q ss_pred             HHHHHHHHHHHHHHhc----chhHHHHHHHHHHHHhhhhhhhHHHHHHHhhCCCchhhHHHHHHhHhhhhHHHhhhhHHH
Q 017795          210 VAQVVMAFALLYYAIG----WPGEIYVTTVLVGLSYGAHWAIVPAAASELFGLKSFGALYNFLTLASPAGSLIFSGVIAS  285 (366)
Q Consensus       210 ~~~~~~~~~~~l~~~~----~~~~l~~~~~l~G~~~g~~~~~~~~~~se~f~~~~~g~~~g~~~~~~~~G~~i~gp~i~G  285 (366)
                      +...+.++|.++++.+    ..+.+..+++++|+|.-..-.....++.-.|-.|+.+..+|+......+|+.+ .=.+.+
T Consensus       115 i~~~fv~~GqliFa~Ggi~~aFw~M~~GRF~FGIGgESlAVaQN~yav~wFKGKELn~vfGlqlSvAR~Gstv-Nf~lm~  193 (459)
T KOG4686|consen  115 ILCIFVFLGQLIFAAGGISHAFWTMLAGRFLFGIGGESLAVAQNKYAVYWFKGKELNFVFGLQLSVARLGSTV-NFLLMP  193 (459)
T ss_pred             HHHHHHHHHHHHHHhchHHHHHHHHHhhheeeccCchhhhhhhcceeEEEecCccccchhhHHHHHHHhhcee-eeeecH
Confidence            4445555666666532    23567788999998865544555667778899999999999999999999996 788899


Q ss_pred             HHhhhhh
Q 017795          286 GIYDYYA  292 (366)
Q Consensus       286 ~l~d~~~  292 (366)
                      ++||+.+
T Consensus       194 ~ly~~~~  200 (459)
T KOG4686|consen  194 FLYDTMG  200 (459)
T ss_pred             HHHHHHH
Confidence            9999876

>TIGR01272 gluP glucose/galactose transporter

Probab=96.55  E-value=0.018  Score=54.82  Aligned_cols=64  Identities=5%  Similarity=-0.052  Sum_probs=57.2

Q ss_pred             chhHHHHHHHHHHHHhhhhhhhHHHHHHHhhCCCchhhHHHHHHhHhhhhHHHhhhhHHHHHhhh
Q 017795          226 WPGEIYVTTVLVGLSYGAHWAIVPAAASELFGLKSFGALYNFLTLASPAGSLIFSGVIASGIYDY  290 (366)
Q Consensus       226 ~~~~l~~~~~l~G~~~g~~~~~~~~~~se~f~~~~~g~~~g~~~~~~~~G~~i~gp~i~G~l~d~  290 (366)
                      +...++++.++.|.|.+...+...++++++.++++.+...|+......+|+.+ ||.+++.+...
T Consensus         9 ~~~~~l~~~f~~g~G~~~lq~~~n~~v~~~~~~~~~~~~l~~~~~~~~~G~~~-gP~i~~~~i~~   72 (310)
T TIGR01272         9 YYVLFLGALFVLASGLTILQVAANPYVSILGPIETAASRLALTQAFNKLGTTV-APLFGGSLILS   72 (310)
T ss_pred             HHHHHHHHHHHHHhhHHHHHhhHHHHHHHHCCcchHHHHHHHHHHHhhhHHHH-HHHHHHHHHhc
Confidence            34567788889999999999999999999999999999999999999999996 99999988854

Disruption of the loci leads to the total loss of glucose or galactose uptake in E.coli. Putative transporters in other bacterial species were isolated by functional complementation, which restored it functional activity.

>KOG3626 consensus Organic anion transporter [Secondary metabolites biosynthesis, transport and catabolism]

Probab=96.55  E-value=0.064  Score=56.50  Aligned_cols=69  Identities=17%  Similarity=0.229  Sum_probs=54.4

Q ss_pred             CHHHHhhhhHHHHHHHHHHHhhhhHHHHHhcHHHHHHH-hCCChhHH--HHHHHHH-HHhhhhhhhhhhhhhh
Q 017795          128 TLPQALMKADFLLLFFSLVLASGSGLTVIDNLGQICQS-LGYADTSI--YVSMISI-WNFLGRVGGGYFSEAI  196 (366)
Q Consensus       128 ~~~~~l~~~~~~ll~~~~~~~~~~~~~~~~~l~~i~~~-~g~~~~~~--~~sl~~i-~~~~g~~~~G~lsD~~  196 (366)
                      +++++++++.|.+..++..+-.....++..++|-+++. +|.+.+.+  +.+...+ +..+|-+++|++.-|+
T Consensus       384 s~~~ll~N~if~~~~l~~~~~~~~~~G~~tFlPKyLE~Qfg~sas~An~l~G~i~vp~~~~Gi~lGG~iikkf  456 (735)
T KOG3626|consen  384 SIKRLLSNPIFMLVVLASVIESLAITGYITFLPKYLETQFGISASLANILTGSIGVPAAAVGIFLGGLIIKKF  456 (735)
T ss_pred             HHHHHhcCchHHHHHHHHHHHHHHHhhHHHhhHHHHHHHcCCCHHHHHHHhhhhhhhhhhhhhhccceeeeee
Confidence            57788999999988888888888888899999998864 79887766  4544444 4457888899988776

>PF03137 OATP: Organic Anion Transporter Polypeptide (OATP) family; InterPro: IPR004156 This family consists of several eukaryotic Organic-Anion-Transporting Polypeptides (OATPs)

Probab=96.41  E-value=0.0008  Score=69.11  Aligned_cols=72  Identities=22%  Similarity=0.244  Sum_probs=0.0

Q ss_pred             CCCHHHHhhhhHHHHHHHHHHHhhhhHHHHHhcHHHHHHH-hCCChhHH--HHHHHHH-HHhhhhhhhhhhhhhhh
Q 017795          126 DFTLPQALMKADFLLLFFSLVLASGSGLTVIDNLGQICQS-LGYADTSI--YVSMISI-WNFLGRVGGGYFSEAIV  197 (366)
Q Consensus       126 ~~~~~~~l~~~~~~ll~~~~~~~~~~~~~~~~~l~~i~~~-~g~~~~~~--~~sl~~i-~~~~g~~~~G~lsD~~g  197 (366)
                      ...++++++|+.|....++..+-.....++..++|.+++. ++.+.+.+  +.....+ +.++|.+++|++..|+.
T Consensus       295 ~~~l~~Ll~Np~f~~~~la~~~~~~~~~G~~tF~pKylE~QF~~sas~A~~l~G~v~ip~~~~G~llGG~ivkk~k  370 (539)
T PF03137_consen  295 PKALKRLLTNPVFMCLILAGVFESFIVSGFATFLPKYLESQFGLSASQASLLTGIVSIPGAALGILLGGYIVKKFK  370 (539)
T ss_dssp             ----------------------------------------------------------------------------
T ss_pred             HHHHHHHhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHhhhhcchhheehheEEEEEEEec
Confidence            3467889999999888888877777777888999998865 78876655  4444443 56788999999988873

Several have been identified mostly in human and rat. Different OATPs vary in tissue distribution and substrate specificity. Since the numbering of different OATPs in particular species was based originally on the order of discovery, similarly numbered OATPs in humans and rats did not necessarily correspond in function, tissue distribution and substrate specificity (in spite of the name, some OATPs also transport organic cations and neutral molecules) so a scheme of using digits for rat OATPs and letters for human ones was introduced []. Prostaglandin transporter (PGT) proteins are also considered to be OATP family members. In addition, the methotrexate transporter OATK is closely related to OATPs. This family also includes several predicted proteins from Caenorhabditis elegans and Drosophila melanogaster. This similarity was not previously noted. Note: Members of this family are described (in the UniProtKB/Swiss-Prot database) as belonging to the SLC21 family of transporters.; GO: 0005215 transporter activity, 0006810 transport, 0016020 membrane; PDB: 3MRR_P.

>PF03137 OATP: Organic Anion Transporter Polypeptide (OATP) family; InterPro: IPR004156 This family consists of several eukaryotic Organic-Anion-Transporting Polypeptides (OATPs)

Probab=96.36  E-value=0.00065  Score=69.80  Aligned_cols=173  Identities=14%  Similarity=0.106  Sum_probs=2.6

Q ss_pred             HHhcHHHHHHHhCCChhHH--HHHHHHHHHhhhhhhhhhhhhhhhhhccCchhHHHHHHHHHHHHHHHHHHhcc------
Q 017795          155 VIDNLGQICQSLGYADTSI--YVSMISIWNFLGRVGGGYFSEAIVRKFAYPRPVAMAVAQVVMAFALLYYAIGW------  226 (366)
Q Consensus       155 ~~~~l~~i~~~~g~~~~~~--~~sl~~i~~~~g~~~~G~lsD~~grr~~~~R~~~~~~~~~~~~~~~~l~~~~~------  226 (366)
                      +...+.++-+.++++++++  +.+.+-+++.+..++..+..+|-      .|+.++.++.+++++|.++++.++      
T Consensus        22 ~~~~lttiErRF~l~S~~~G~i~s~~di~~~~~~~~vsy~g~~~------hrprwig~g~~~~~~g~~l~~lPhf~~~~y   95 (539)
T PF03137_consen   22 VNSSLTTIERRFGLSSSQSGLISSSYDIGSLVVVLFVSYFGGRG------HRPRWIGIGALLMGLGSLLFALPHFLSGPY   95 (539)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             HHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHhhhc------CCcceeeecHHHHHHHHHHHhccHhhcCCC
Confidence            4455777888899988776  77777788887777777665553      355566788888888777653110      


Q ss_pred             ---------------------------------------------hhHHHHHHHHHHHHhhhhhhhHHHHHHHhhCCCch
Q 017795          227 ---------------------------------------------PGEIYVTTVLVGLSYGAHWAIVPAAASELFGLKSF  261 (366)
Q Consensus       227 ---------------------------------------------~~~l~~~~~l~G~~~g~~~~~~~~~~se~f~~~~~  261 (366)
                                                                   ...++++-++.|+|....+++..+++-|...+++.
T Consensus        96 ~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~gq~l~GiG~~pl~tLG~tYiDDnv~~~~s  175 (539)
T PF03137_consen   96 SYEEASNSNGNSSISSNLCDSSSSSQASSDCQDCCSSSSSSLSGYFYVFILGQLLIGIGATPLYTLGITYIDDNVSKKNS  175 (539)
T ss_dssp             --------------------------------------------------------SSS---------------------
T ss_pred             ccccccccccccccccccccccccccccCccccccccccccchHHHHHHHHHHHHHhccccCCccceeeeeccccccccC
Confidence                                                         01234556778888888899999999999999999


Q ss_pred             hhHHHHHHhHhhhhHHHhhhhHHHHHhhhhhhhhhhhhhhccCCCCCcccCCC--CCCcccCCc---chHHHHHHHHHHH
Q 017795          262 GALYNFLTLASPAGSLIFSGVIASGIYDYYAEKQAGLLWKYNGNMLPVSFRDQ--ETPTCLGSI---CYSITCGIMAGLC  336 (366)
Q Consensus       262 g~~~g~~~~~~~~G~~i~gp~i~G~l~d~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~c~g~~---~~~~~f~i~~~~~  336 (366)
                      +...|++.....+|..+ |=.++|.....+...               ...+.  -+.+=..++   .|-..|.+.+.+.
T Consensus       176 plYiGi~~~~~~lGPa~-Gf~lg~~~L~~yvD~---------------~~~~~~~~~i~p~dp~WvGAWWLGfli~g~~~  239 (539)
T PF03137_consen  176 PLYIGILYAMSILGPAL-GFLLGSFCLRIYVDF---------------PKVPPDGVGITPSDPRWVGAWWLGFLICGILL  239 (539)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             ccchhhhhHHhhccHHH-HHHHHHHHHhceeCC---------------ccccccCCCCCCCCccHHHHHHHHHHHHHHHH
Confidence            99999999988888885 766666655443200               00000  011111111   3666777788777


Q ss_pred             HHHHHHHHHHHhh
Q 017795          337 IIAMVMSLIVVHR  349 (366)
Q Consensus       337 ~~~~~~~~~~~~~  349 (366)
                      ++.++..+.+.++
T Consensus       240 ~l~aipl~~FPk~  252 (539)
T PF03137_consen  240 FLSAIPLFFFPKK  252 (539)
T ss_dssp             -------------
T ss_pred             HHHHHHHHcCCcc
Confidence            7777666666544

Several have been identified mostly in human and rat. Different OATPs vary in tissue distribution and substrate specificity. Since the numbering of different OATPs in particular species was based originally on the order of discovery, similarly numbered OATPs in humans and rats did not necessarily correspond in function, tissue distribution and substrate specificity (in spite of the name, some OATPs also transport organic cations and neutral molecules) so a scheme of using digits for rat OATPs and letters for human ones was introduced []. Prostaglandin transporter (PGT) proteins are also considered to be OATP family members. In addition, the methotrexate transporter OATK is closely related to OATPs. This family also includes several predicted proteins from Caenorhabditis elegans and Drosophila melanogaster. This similarity was not previously noted. Note: Members of this family are described (in the UniProtKB/Swiss-Prot database) as belonging to the SLC21 family of transporters.; GO: 0005215 transporter activity, 0006810 transport, 0016020 membrane; PDB: 3MRR_P.

>TIGR00769 AAA ADP/ATP carrier protein family

Probab=96.35  E-value=0.22  Score=50.31  Aligned_cols=45  Identities=11%  Similarity=0.143  Sum_probs=39.6

Q ss_pred             hhh-hHHHHHHHhhCCCchhhHHHHHHhHhhhhHHHhhhhHHHHHhh
Q 017795          244 HWA-IVPAAASELFGLKSFGALYNFLTLASPAGSLIFSGVIASGIYD  289 (366)
Q Consensus       244 ~~~-~~~~~~se~f~~~~~g~~~g~~~~~~~~G~~i~gp~i~G~l~d  289 (366)
                      ..+ +.|+.+.|++..++..+.|++...++++|.++ ||.+..++.+
T Consensus       145 vvS~lFW~fandi~t~~qakRfy~l~~~ganlg~i~-sg~~~~~~~~  190 (472)
T TIGR00769       145 VLSLLFWGFANQITTIDEAKRFYALFGLGANVALIF-SGRTIKYFSK  190 (472)
T ss_pred             HHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHH
Confidence            344 78899999999999999999999999999996 8888888764

These proteins are members of the ATP:ADP Antiporter (AAA) Family (TC 2.A.12), which consists of nucleotide transporters that have 12 GES predicted transmembrane regions. One protein from Rickettsia prowazekii functions to take up ATP from the eukaryotic cell cytoplasm into the bacterium in exchange for ADP. Five AAA family paralogues are encoded within the genome of R. prowazekii. This organism transports UMP and GMP but not CMP, and it seems likely that one or more of the AAA family paralogues are responsible. The genome of Chlamydia trachomatis encodes two AAA family members, Npt1 and Npt2, which catalyse ATP/ADP exchange and GTP, CTP, ATP and UTP uptake probably employing a proton symport mechanism. Two homologous adenylate translocators of Arabidopsis thaliana are postulated to be localized to the intracellular plastid membrane where they function as ATP importers.

>COG2270 Permeases of the major facilitator superfamily [General function prediction only]

Probab=96.19  E-value=0.058  Score=53.09  Aligned_cols=152  Identities=9%  Similarity=-0.066  Sum_probs=91.4

Q ss_pred             HHHHHHHHHhhhhhhhhhhhhhhhhhccCchhHHHHHHHHHHHHHHHHHH--hc-chh-HHHHHHHHHHHHhhhhhhhHH
Q 017795          174 YVSMISIWNFLGRVGGGYFSEAIVRKFAYPRPVAMAVAQVVMAFALLYYA--IG-WPG-EIYVTTVLVGLSYGAHWAIVP  249 (366)
Q Consensus       174 ~~sl~~i~~~~g~~~~G~lsD~~grr~~~~R~~~~~~~~~~~~~~~~l~~--~~-~~~-~l~~~~~l~G~~~g~~~~~~~  249 (366)
                      ..++..+..++-.|..|.++|+.|+|+..     +.....+..+..+++.  .. ++. ...+...+...++........
T Consensus        63 ~~aia~llia~LapiLG~iaD~~g~Rk~~-----~~~f~~i~i~~~~~L~~i~~~s~~~~~l~~~il~~i~~~~s~Vfyd  137 (438)
T COG2270          63 ASAIAGLLIALLAPILGTIADYPGPRKKF-----FGFFTAIGIISTFLLWFIPPGSYLLLLLLFLILASIGFEFSNVFYD  137 (438)
T ss_pred             HHHHHHHHHHHHHHHhhhhhccCCCcchH-----HHHHHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHHhcchhheehh
Confidence            45566666677788889999999987654     2333333333333333  22 222 334445566777777778888


Q ss_pred             HHHHHhhCCCchhhHHHHHHhHhhhhHHHhhhhHHH---HHhh-hhhhhhhhhhhhccCCCCCcccCCCCCCcccCCcch
Q 017795          250 AAASELFGLKSFGALYNFLTLASPAGSLIFSGVIAS---GIYD-YYAEKQAGLLWKYNGNMLPVSFRDQETPTCLGSICY  325 (366)
Q Consensus       250 ~~~se~f~~~~~g~~~g~~~~~~~~G~~i~gp~i~G---~l~d-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~g~~~~  325 (366)
                      ++.+++..+++.+...|+....+.+|+.+  +.+..   .+.. ..+..+.     ..            .+.-.....-
T Consensus       138 s~L~~~~~k~~~~riS~lg~~~gylgs~i--~li~~~~~~~~~~~~~~~~~-----l~------------~l~~~~~~~~  198 (438)
T COG2270         138 SMLPRLTTKDNMGRISGLGWALGYLGSVI--LLIFVVLGFALGQQTGITII-----LL------------GLPPADGEDV  198 (438)
T ss_pred             hHhhhhcCccccCcccccccccccccchH--HHHHHHHHHhcccccceeEE-----ee------------ccCccccccc
Confidence            99999999988888888887778888875  44443   1111 1111110     00            0000111235


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHhh
Q 017795          326 SITCGIMAGLCIIAMVMSLIVVHR  349 (366)
Q Consensus       326 ~~~f~i~~~~~~~~~~~~~~~~~~  349 (366)
                      |.++.+.++..++-.+..+...++
T Consensus       199 ri~~~l~A~W~li~~iPm~~~v~~  222 (438)
T COG2270         199 RITGLLAALWWLLFALPMILNVHD  222 (438)
T ss_pred             hhHHHHHHHHHHHHHhHHHhcccc
Confidence            888888888888877777766543

>PF02487 CLN3: CLN3 protein; InterPro: IPR003492 Batten's disease, the juvenile variant of neuronal ceroid lipofuscionosis (NCL), is a recessively inherited disorder affecting children of 5-10 years of age

Probab=96.06  E-value=0.44  Score=47.04  Aligned_cols=103  Identities=20%  Similarity=0.212  Sum_probs=71.0

Q ss_pred             HHHHHHHHHhhhhhhhhhhhhhhhhhccCchhHHHHHHHHHHHHHHHHHH----hcchhHHHHHHHHHHHHhhhhhhhHH
Q 017795          174 YVSMISIWNFLGRVGGGYFSEAIVRKFAYPRPVAMAVAQVVMAFALLYYA----IGWPGEIYVTTVLVGLSYGAHWAIVP  249 (366)
Q Consensus       174 ~~sl~~i~~~~g~~~~G~lsD~~grr~~~~R~~~~~~~~~~~~~~~~l~~----~~~~~~l~~~~~l~G~~~g~~~~~~~  249 (366)
                      +..++.++.+++|--.-.+     |   .+|.+.+.+.+.+..+.+++-+    ..+.+.+++..+..|+..|+.+...+
T Consensus       286 Y~~~YQ~GVFISRSS~~~~-----r---ir~lwils~LQ~~nl~~~~l~s~~~fipsi~ivf~lif~eGLlGGa~YVNtF  357 (402)
T PF02487_consen  286 YQLLYQLGVFISRSSLPFF-----R---IRRLWILSLLQVINLVFLLLQSWYRFIPSIWIVFVLIFYEGLLGGASYVNTF  357 (402)
T ss_pred             HHHHHHHHHhhhhcceeee-----e---hhhHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHhhhHHHHHHH
Confidence            6667777777777543222     2   2344555665555544433322    23445556677778999999999999


Q ss_pred             HHHHHhhCCCchhhHHHHHHhHhhhhHHHhhhhHHH
Q 017795          250 AAASELFGLKSFGALYNFLTLASPAGSLIFSGVIAS  285 (366)
Q Consensus       250 ~~~se~f~~~~~g~~~g~~~~~~~~G~~i~gp~i~G  285 (366)
                      ..++|-.++++|--++|....+-.+|-.+ +..++-
T Consensus       358 ~~I~~~~~~~~REFslg~vsvsds~GI~l-Agll~l  392 (402)
T PF02487_consen  358 YRISEEVPPEDREFSLGAVSVSDSLGILL-AGLLGL  392 (402)
T ss_pred             HHHHhcCCHHHHHHHHHHHHHHhhHHHHH-HHHHHH
Confidence            99999899999999999999999988885 555443

The disease is characterised by progressive loss of vision, seizures and psychomotor disturbances. Biochemically, the disease is characterised by lysosomal accumulation of hydrophobic material, mainly ATP synthase subunit C, largely in the brain but also in other tissues. The disease is fatal within a decade []. Mutations in the CLN3 gene are believed to cause Batten's disease []. The CLN3 gene, with a predicted 438-residue product, maps to chromosome p16p12.1. The gene contains at least 15 exons spanning 15kb and is highly conserved in mammals []. A 1.02kb deletion in the CLN3 gene, occurring in either one or both alleles, is found in 85% of Batten disease chromosomes causing a frameshift generating a predicted translated product of 181 amino acid residues [, ]. 22 other mutations, including deletions, insertions and point mutations, have been reported. It has been suggested that such mutations result in severely truncated CLN3 proteins, or affect its structure/conformation [, ]. CLN3 proteins, which are believed to associate in complexes, are heavily glycosylated lysosomal membrane proteins [], containing complex Asn-linked oligosaccharides []. Extensive glycosylation is important for the stability of these lysosomal proteins in the highly hydrolytic lysosomal lumen. Lysosomal sequestration of active lysosomal enzymes, transport of degraded molecules from the lysosomes, and fusion and fission between lysosomes and other organelles. The CLN3 protein is a 43kDa, highly hydrophobic, multi-transmembrane (TM), phosphorylated protein []. Hydrophobicity analysis predicts 6-9 TM segments, suggesting that CLN3 is a TM protein that may function as a chaperone or signal transducer. The majority of putative phosphorylation sites are found in the N-terminal domain, encompassing 150 residues []. Phosphorylation is believed to be important for membrane compartment interaction, in the formation of functional complexes, and in regulation and interactions with other proteins []. CLN3 contains several motifs that may undergo lipid post-translational modifications (PTMs). PTMs contribute to targeting and anchoring of modified proteins to distinct biological membranes []. There are three general classes of lipid modification: N-terminal myristoylation, C-terminal prenylation, and palmitoylation of cysteine residues. Such modifications are believed to be a common form of PTM occurring in 0.5% of all cellular proteins, including brain tissue []. The C terminus of the CLN3 contains various lipid modification sites: C435, target for prenylation; G419, target for myristoylation; and C414, target for palmitoylation []. Prenylation results in protein hydrophobicity, influences interaction with upstream regulatory proteins and downstream effectors, facilitates protein-protein interaction (multisubunit assembly) and promotes anchoring to membrane lipids. The prenylation motif, Cys-A-A-X, is highly conserved within CLN3 protein sequences of different species []. Species with known CLN3 protein homologues include: Homo sapiens, Canis familiaris, Mus musculus, Saccharomyces cerevisiae and Drosophila melanogaster.; GO: 0016020 membrane

>KOG2563 consensus Permease of the major facilitator superfamily [General function prediction only]

Probab=96.00  E-value=0.13  Score=51.19  Aligned_cols=109  Identities=7%  Similarity=-0.012  Sum_probs=70.7

Q ss_pred             HHHHHHHHHhhhhhhhhhhhhhhhhhccCchhHHHHHHHHHHHHHHHHHH-hcch---h-----HHHHHHHHHHHHhhhh
Q 017795          174 YVSMISIWNFLGRVGGGYFSEAIVRKFAYPRPVAMAVAQVVMAFALLYYA-IGWP---G-----EIYVTTVLVGLSYGAH  244 (366)
Q Consensus       174 ~~sl~~i~~~~g~~~~G~lsD~~grr~~~~R~~~~~~~~~~~~~~~~l~~-~~~~---~-----~l~~~~~l~G~~~g~~  244 (366)
                      ...++.+......+.+-|+-|++|-|...      .++..+.++|..+=. ...+   .     ....+..+.+...-..
T Consensus        84 lsmIym~v~vp~gf~~mw~ldk~GLR~a~------llgt~ln~iGa~Ir~iss~p~v~~~f~~~l~~~Gq~iaa~Aq~Fi  157 (480)
T KOG2563|consen   84 LSMIYMVVSVPFGFAAMWILDKFGLRTAL------LLGTVLNGIGAWIRLISSLPFVPPLFRRPLTHTGQSIAAAAQPFI  157 (480)
T ss_pred             HHHHHHHHHHHHhhHHHHhhcccchHHHH------HHHHHHHHHHHHHhhhccCccccccchhhhhHHhHHHHHHhhhHh
Confidence            66667777788888888999999887655      677777787766622 2112   1     2234444444333222


Q ss_pred             hhhHHH-HHHHhhCCCchhhHHHHHHhHhhhhHHHhhhhHHHHHhhh
Q 017795          245 WAIVPA-AASELFGLKSFGALYNFLTLASPAGSLIFSGVIASGIYDY  290 (366)
Q Consensus       245 ~~~~~~-~~se~f~~~~~g~~~g~~~~~~~~G~~i~gp~i~G~l~d~  290 (366)
                       -..|+ +.+-.|++++|+++..+..++.++|..+ |-++...+..+
T Consensus       158 -m~lPskiA~~WF~~~qra~A~~~~v~~n~LGvav-g~llppilV~~  202 (480)
T KOG2563|consen  158 -LGLPSKIAAVWFPPDQRAIATVLGVMGNPLGVAV-GFLLPPILVPS  202 (480)
T ss_pred             -hccccHHHHhhCCcchhhhhhhHHHhcchHHHHH-HhhccceecCC
Confidence             22233 5566799999999999999988888885 65555555443

>KOG3098 consensus Uncharacterized conserved protein [Function unknown]

Probab=95.99  E-value=0.86  Score=45.85  Aligned_cols=142  Identities=13%  Similarity=0.098  Sum_probs=77.0

Q ss_pred             HHhhhhHHHHHHHHHHHhhhhHHHHHhcHHHHHH---HhCCChhHHHHHHH----HHHHhhhhhhhhhhhhhhhhhccCc
Q 017795          131 QALMKADFLLLFFSLVLASGSGLTVIDNLGQICQ---SLGYADTSIYVSMI----SIWNFLGRVGGGYFSEAIVRKFAYP  203 (366)
Q Consensus       131 ~~l~~~~~~ll~~~~~~~~~~~~~~~~~l~~i~~---~~g~~~~~~~~sl~----~i~~~~g~~~~G~lsD~~grr~~~~  203 (366)
                      ++++++.+.+++..++.............|.-..   ..+.+... +..+.    .++..++....+.+++|+.+..   
T Consensus       235 ~l~~~~~ml~L~~~f~~tG~~~Sf~~~iypt~i~ft~~~~~n~~~-~~ai~~~~~g~g~v~~g~~~~~l~~rir~fg---  310 (461)
T KOG3098|consen  235 KLLKTPKMLLLFPFFFYTGLETSFWISIYPTCISFTRKLGSNTTY-LIAIYSIGIGLGEVIGGLDFSILSKRIRGFG---  310 (461)
T ss_pred             HHhcCHhHHHHHHHHHHHHHHHHHHHhccchhhhhhhhccCcchh-HHHHHHHHHhHHHHHHHHHHHHHhhhhhhcc---
Confidence            4556677766665555544333333333333221   22332222 33333    3444555566677776653321   


Q ss_pred             hhHHHHHHHHHHHHHHHHHH--hc--c---------------hhHHHHHHHHHHHHhhhhhhhHHHHHHHhhCCCchhhH
Q 017795          204 RPVAMAVAQVVMAFALLYYA--IG--W---------------PGEIYVTTVLVGLSYGAHWAIVPAAASELFGLKSFGAL  264 (366)
Q Consensus       204 R~~~~~~~~~~~~~~~~l~~--~~--~---------------~~~l~~~~~l~G~~~g~~~~~~~~~~se~f~~~~~g~~  264 (366)
                      |...+.++.++-.+++++..  .+  .               .....+..++.|++-....+..+.++...+ ++.+..+
T Consensus       311 ~~~~~~~~~~~~~~~~~li~l~~p~dap~~~t~~~~~~~~~~~~~~~ii~~l~G~~D~~~~t~~~~ii~~~~-~~~~~~~  389 (461)
T KOG3098|consen  311 RKPTVLIGIIIHLIGFLLIHLSFPNDAPLRPTDSPPLLFTPSYYLALIIGFLLGFGDACFNTQRYVIIALLY-PDDRAQA  389 (461)
T ss_pred             cCcchhHHHHHHHHHHHHHhccccccCCCCCCcccccccccchhHHHHHHHHHhhHHHHHHHHHHHHHHHHh-cCchHHH
Confidence            11222444444333333322  11  1               124556778889998888888889999999 6777777


Q ss_pred             HHHHHhHhhhhHH
Q 017795          265 YNFLTLASPAGSL  277 (366)
Q Consensus       265 ~g~~~~~~~~G~~  277 (366)
                      .++.-.-..+++.
T Consensus       390 fsi~kfyq~~~s~  402 (461)
T KOG3098|consen  390 FSLFKFYQSVASC  402 (461)
T ss_pred             HHHHHHHHHHHHH
Confidence            7777666655555

>PF01770 Folate_carrier: Reduced folate carrier; InterPro: IPR002666 The reduced folate carrier (a transmembrane glycoprotein) transports reduced folate into mammalian cells via the carrier mediated mechanism (as opposed to the receptor mediated mechanism) it also transports cytotoxic folate analogues used in chemotherapy [], such as methotrexate (MTX)

Probab=95.91  E-value=0.94  Score=44.87  Aligned_cols=94  Identities=13%  Similarity=0.117  Sum_probs=58.2

Q ss_pred             HHHHHHHHHhhhhhhhhhhhhhhhhhccCchhHHHHHHHHHHHHHHHHHH-hcchhHHHHHHHHHHHHhhhhhhhHHHHH
Q 017795          174 YVSMISIWNFLGRVGGGYFSEAIVRKFAYPRPVAMAVAQVVMAFALLYYA-IGWPGEIYVTTVLVGLSYGAHWAIVPAAA  252 (366)
Q Consensus       174 ~~sl~~i~~~~g~~~~G~lsD~~grr~~~~R~~~~~~~~~~~~~~~~l~~-~~~~~~l~~~~~l~G~~~g~~~~~~~~~~  252 (366)
                      .-+...+.+.++.+..|++..++.+.    ..+.+.+..++.+..+++.. ..+.+..|++-++++..+-...++...-+
T Consensus       290 VeA~~tllgA~~al~~g~v~~~w~~~----~~l~l~~~S~l~a~~L~lm~~t~~Iwv~Y~~yIif~~~y~fliTiA~~qI  365 (412)
T PF01770_consen  290 VEAASTLLGAIAALLAGYVKVNWDRW----GELALGVFSLLQAGLLFLMSFTGNIWVCYAGYIIFRSLYMFLITIASFQI  365 (412)
T ss_pred             HHHHHHHHHHHHHHHHhHhhcchHHH----HHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            44555566677777888875444431    12233333344443344444 34556777888888877777777777767


Q ss_pred             HHhhCCCchhhHHHHHHhH
Q 017795          253 SELFGLKSFGALYNFLTLA  271 (366)
Q Consensus       253 se~f~~~~~g~~~g~~~~~  271 (366)
                      +.....+.+|..+|+-+..
T Consensus       366 A~~l~~e~yaLVFGiNtf~  384 (412)
T PF01770_consen  366 AKNLSEERYALVFGINTFV  384 (412)
T ss_pred             HHhccccceeeeeeeHHHH
Confidence            7777778888888875543

Mammalian cells have an absolute requirement for exogenous folates which are needed for growth, and biosynthesis of macromolecules [].; GO: 0005542 folic acid binding, 0008518 reduced folate carrier activity, 0006810 transport, 0016020 membrane

>PF06963 FPN1: Ferroportin1 (FPN1); InterPro: IPR009716 This entry represents the solute carrier family 40 member 1 family of proteins, also known as Ferroportin 1

Probab=95.83  E-value=1.5  Score=43.84  Aligned_cols=189  Identities=12%  Similarity=0.056  Sum_probs=94.9

Q ss_pred             HHHHHHHHHHhhhhHHHHHhcHHHHHHHhCC-C--hhHHHHHHHHHHHhhhhhhhhhhhhhhhhhccCchhHHHH-HHHH
Q 017795          138 FLLLFFSLVLASGSGLTVIDNLGQICQSLGY-A--DTSIYVSMISIWNFLGRVGGGYFSEAIVRKFAYPRPVAMA-VAQV  213 (366)
Q Consensus       138 ~~ll~~~~~~~~~~~~~~~~~l~~i~~~~g~-~--~~~~~~sl~~i~~~~g~~~~G~lsD~~grr~~~~R~~~~~-~~~~  213 (366)
                      .|.++...++.....-+..+..|-++.+..- +  ....+.-.-.+..++..+..|...||..|.+..+...+.- ....
T Consensus         4 ~~~Ly~sh~ls~w~dR~w~Fa~~L~L~~i~p~sLl~~siygl~~~~~~~~f~~~vG~~iD~~~Rl~~~~~~l~~Qn~sv~   83 (432)
T PF06963_consen    4 LWRLYLSHFLSTWGDRMWEFAVPLFLISIFPGSLLPVSIYGLVRSLSAILFGPWVGRWIDRSPRLKVIRTSLVVQNLSVA   83 (432)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHhhHHHHHHHhCCcchhhHHHHHHHHHHHHH
Confidence            4566677777766666676777777766521 1  1222333334455666677788889988876653222211 1222


Q ss_pred             HHHHHHHHHH-hcch----hHHHHHH--HHHHHHhhhh-hhhHHHH------HHHhhC--CCchhhHHHHHHhHhhhhHH
Q 017795          214 VMAFALLYYA-IGWP----GEIYVTT--VLVGLSYGAH-WAIVPAA------ASELFG--LKSFGALYNFLTLASPAGSL  277 (366)
Q Consensus       214 ~~~~~~~l~~-~~~~----~~l~~~~--~l~G~~~g~~-~~~~~~~------~se~f~--~~~~g~~~g~~~~~~~~G~~  277 (366)
                      +.++.++.+. ....    .......  ++..+|.-.. .+....+      +..+.+  +.......+.+--.=-+..+
T Consensus        84 ~s~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~i~~Las~~~~iavERDWVvvi~~~~~~~La~~NA~mRRIDL~ckl  163 (432)
T PF06963_consen   84 ASCALFLLLLSYPSSSSQSSWLFIALFALLILLGAIERLASIANTIAVERDWVVVIAGGDPGALARMNATMRRIDLFCKL  163 (432)
T ss_pred             HHHHHHHHHHhCCccccccchHHHHHHHHHHHHHHHHHHHHhhhhheeccchhhhhcCCChhhHHHHHHHHHHHHHHHHH
Confidence            2222222222 1111    1222211  1122221111 1111111      112221  11232223333323334455


Q ss_pred             HhhhhHHHHHhhhhhhhhhhhhhhccCCCCCcccCCCCCCcccCCcchHHHHHHHHHHHHHHHHHHHHHHhhcHHHHHHH
Q 017795          278 IFSGVIASGIYDYYAEKQAGLLWKYNGNMLPVSFRDQETPTCLGSICYSITCGIMAGLCIIAMVMSLIVVHRTKSVYAQL  357 (366)
Q Consensus       278 i~gp~i~G~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~g~~~~~~~f~i~~~~~~~~~~~~~~~~~~~r~~~~~~  357 (366)
                       ++|++.|.+.+..+                                +..+..+.++..+++..+=.++..+..+....+
T Consensus       164 -laPl~vG~l~t~~s--------------------------------~~~~~~~i~~~N~~S~~vEy~~l~~VY~~~P~L  210 (432)
T PF06963_consen  164 -LAPLFVGLLMTFAS--------------------------------PVIAAIFIAGWNLASVFVEYFLLARVYNSVPAL  210 (432)
T ss_pred             -HHHHHHHHHhhccC--------------------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHhChHh
Confidence             59999999998776                                777888888888888888777766654444444


Q ss_pred             hh
Q 017795          358 YG  359 (366)
Q Consensus       358 ~~  359 (366)
                      ..
T Consensus       211 ~~  212 (432)
T PF06963_consen  211 AV  212 (432)
T ss_pred             cC
Confidence            33

It is thought to be involved in iron export from duodenal epithelial cells and also in transfer of iron between maternal and fetal circulation. This family of proteins is known to be localised in the basolateral membrane of polarized epithelial cells [].; GO: 0005381 iron ion transmembrane transporter activity, 0034755 iron ion transmembrane transport, 0016021 integral to membrane

>COG3104 PTR2 Dipeptide/tripeptide permease [Amino acid transport and metabolism]

Probab=95.82  E-value=0.68  Score=46.67  Aligned_cols=120  Identities=14%  Similarity=0.117  Sum_probs=80.9

Q ss_pred             hCCChhHH-HHHHHHHHHhhhhhhhhhhhhhhhhhccCch-hHHHHHHHHHHHHHHHHHHh-----cc------hhHHHH
Q 017795          166 LGYADTSI-YVSMISIWNFLGRVGGGYFSEAIVRKFAYPR-PVAMAVAQVVMAFALLYYAI-----GW------PGEIYV  232 (366)
Q Consensus       166 ~g~~~~~~-~~sl~~i~~~~g~~~~G~lsD~~grr~~~~R-~~~~~~~~~~~~~~~~l~~~-----~~------~~~l~~  232 (366)
                      +|++-... +-++-.++-.+..|+..++--+.++++.-+| +.-+.+++.+++.+++++..     .+      ...++.
T Consensus       320 ~g~~vp~~~fQslNp~~Iii~~pI~a~l~~~l~~~~~~ps~~~KFalGl~l~g~~fl~l~~~~~~~~~~~~~~s~~~lil  399 (498)
T COG3104         320 FGFEVPPAWFQSLNPFFIILFSPILAALWTKLGRGNKQPSTPIKFALGLILAGLGFLILLLAGIWFGGPSGLVSVWWLVL  399 (498)
T ss_pred             cceecCHHHHHhhCHHHHHHHHHHHHHHHhHhhcCCCCCCcchHHHHHHHHHHHHHHHHHHHHHhhcCCCCCcCHHHHHH
Confidence            34443333 7777777778888877777777666644443 33456677777777666431     11      234566


Q ss_pred             HHHHHHHHhhhhhhhHHHHHHHhhCCCchhhHHHHHHhHhhhhHHHhhhhHHHH
Q 017795          233 TTVLVGLSYGAHWAIVPAAASELFGLKSFGALYNFLTLASPAGSLIFSGVIASG  286 (366)
Q Consensus       233 ~~~l~G~~~g~~~~~~~~~~se~f~~~~~g~~~g~~~~~~~~G~~i~gp~i~G~  286 (366)
                      ..++.++|--...++.-+.+..+-|++-.+..++...+....|..+ +..+++.
T Consensus       400 ~y~l~s~gEL~iSpvGLs~~t~laP~~~~s~~ma~wfLt~a~~~~l-~g~va~~  452 (498)
T COG3104         400 SYVLQSFGELFISPVGLSMVTKLAPPALKSFIMAMWFLTVAAGQTL-GGQVAGL  452 (498)
T ss_pred             HHHHHHHHHHHhCHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHh-hceeccc
Confidence            6777888876667777788888888877888888888887777775 6666663

>TIGR00939 2a57 Equilibrative Nucleoside Transporter (ENT)

Probab=95.55  E-value=0.16  Score=50.96  Aligned_cols=103  Identities=13%  Similarity=0.120  Sum_probs=61.1

Q ss_pred             HHHHHHHHHhhhhhhhhhhhhhhhhhccCchhHH-HHHHHHHHHHHHHHHHh----------cchhHHHHHHHHHHHHhh
Q 017795          174 YVSMISIWNFLGRVGGGYFSEAIVRKFAYPRPVA-MAVAQVVMAFALLYYAI----------GWPGEIYVTTVLVGLSYG  242 (366)
Q Consensus       174 ~~sl~~i~~~~g~~~~G~lsD~~grr~~~~R~~~-~~~~~~~~~~~~~l~~~----------~~~~~l~~~~~l~G~~~g  242 (366)
                      ...+++++..+||.+..+.. .-.+|   +|.++ ..+.=++....++++..          .+....++..+++|+..|
T Consensus       312 ~~~~fNvgD~vGR~~~~~~~-~p~~~---~~~l~i~s~~R~iFIPlf~lcn~~~~~~~p~~~~~d~~~~~~~~l~gltnG  387 (437)
T TIGR00939       312 CFLLFNLFDWLGRSLTSKFM-WPDED---SRWLPILSFLRVLFIPLFLLCNYPQRSRLPVFFPGDAYFIILMLLFGFSNG  387 (437)
T ss_pred             HHHHHHHHHHHHhhhhheeE-eeCCC---ccchHHHHHHHHHHHHHHHHhcCCccccCCeeecccHHHHHHHHHHHHhhh
Confidence            78888999999999665431 11111   11111 22222333333333322          233445667888898888


Q ss_pred             hhhhhHHHHHHHhhCCCchhhHHHHHHhHhhhhHHHhhh
Q 017795          243 AHWAIVPAAASELFGLKSFGALYNFLTLASPAGSLIFSG  281 (366)
Q Consensus       243 ~~~~~~~~~~se~f~~~~~g~~~g~~~~~~~~G~~i~gp  281 (366)
                      -..++.....++...++++-.+-++++.+-.+|-.+ |.
T Consensus       388 y~~s~~m~~~p~~v~~~e~e~aG~~~~~~l~~Gl~~-Gs  425 (437)
T TIGR00939       388 YLGSLSMCLAPRQVDPHEREVAGALMVIFLLVGLAL-GA  425 (437)
T ss_pred             HHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHHHH-HH
Confidence            776766666777777777877777777776666664 44

>KOG3626 consensus Organic anion transporter [Secondary metabolites biosynthesis, transport and catabolism]

Probab=95.53  E-value=0.052  Score=57.16  Aligned_cols=174  Identities=15%  Similarity=0.113  Sum_probs=113.9

Q ss_pred             HHHhcHHHHHHHhCCChhHH--HHHHHHHHHhhhhhhhhhhhhhhhhhccCchhHHHHHHHHHHHHHHHHHHhcc-----
Q 017795          154 TVIDNLGQICQSLGYADTSI--YVSMISIWNFLGRVGGGYFSEAIVRKFAYPRPVAMAVAQVVMAFALLYYAIGW-----  226 (366)
Q Consensus       154 ~~~~~l~~i~~~~g~~~~~~--~~sl~~i~~~~g~~~~G~lsD~~grr~~~~R~~~~~~~~~~~~~~~~l~~~~~-----  226 (366)
                      .+...+.++-+-++.+++..  +.+.+-+++.+.-.+..+..-|..|      +.++.++.++++++.++.+..+     
T Consensus       115 y~~s~IttiErRF~i~Ss~sG~I~s~~dig~~l~i~fVsYfG~r~Hr------Pr~Ig~G~~~m~lgsll~alPHf~~~~  188 (735)
T KOG3626|consen  115 YFNSVITTIERRFKISSSQSGLIASSYDIGNLLLIIFVSYFGSRGHR------PRWIGIGLVLMGLGSLLFALPHFFSGP  188 (735)
T ss_pred             hhhhhhhhhhhhcCCCCCcceeEeeecccchhhhhHhHHHhccccCc------cceeeechhHHHHHHHHHhChHHhcCc
Confidence            34455666777788877655  5677777777777777766555533      3344667777777666643210     


Q ss_pred             --------------h---------------------------------h-HHHHHHHHHHHHhhhhhhhHHHHHHHhhCC
Q 017795          227 --------------P---------------------------------G-EIYVTTVLVGLSYGAHWAIVPAAASELFGL  258 (366)
Q Consensus       227 --------------~---------------------------------~-~l~~~~~l~G~~~g~~~~~~~~~~se~f~~  258 (366)
                                    +                                 . .++++-++.|+|....+++..+++-|....
T Consensus       189 y~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~llff~~q~l~GIG~Tpi~tlGisYiDDnvk~  268 (735)
T KOG3626|consen  189 YEYELEVIKQSVENPSSSLSFCCCNKSTNLCRPSPENSKREKESTSYPFLLFFLGQLLLGIGATPIFTLGISYIDDNVKK  268 (735)
T ss_pred             chhhhhhhhccccCCccccchhhccCCccccCCCCCcccccccCCchhHHHHHHHHHHhhcCCCCCccCCCccccccccc
Confidence                          0                                 1 233455677888888889999999999999


Q ss_pred             CchhhHHHHHHhHhhhhHHHhhhhHHHHHhhhhhhhhhhhhhhccCCCCCcccCCCCCCcccCCc---chHHHHHHHHHH
Q 017795          259 KSFGALYNFLTLASPAGSLIFSGVIASGIYDYYAEKQAGLLWKYNGNMLPVSFRDQETPTCLGSI---CYSITCGIMAGL  335 (366)
Q Consensus       259 ~~~g~~~g~~~~~~~~G~~i~gp~i~G~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~g~~---~~~~~f~i~~~~  335 (366)
                      ++-....|++.....+|.++ |=.+++++...+...              +  ......+-..|+   .|...|++.+.+
T Consensus       269 ~~SplYlgi~~~~~~lGPai-GfllgS~~l~lYvD~--------------~--~~~~~it~~DPrWIGAWWlGFLi~g~~  331 (735)
T KOG3626|consen  269 KNSPLYLGILYSMAILGPAI-GFLLGSFCLKLYVDF--------------G--LSPIGITPTDPRWIGAWWLGFLICGAL  331 (735)
T ss_pred             cCCcHHHHHHHHHHHhhhHH-HHHHHHHHHHeeecc--------------c--cCCCCCCCCCcchhhHHHHHHHHHHHH
Confidence            99999999999988888885 777777766554311              0  000111112222   478888888888


Q ss_pred             HHHHHHHHHHHHhhc
Q 017795          336 CIIAMVMSLIVVHRT  350 (366)
Q Consensus       336 ~~~~~~~~~~~~~~~  350 (366)
                      .++.++..+.+.++.
T Consensus       332 ~~~~a~p~f~fPk~l  346 (735)
T KOG3626|consen  332 LLFSAVPLFFFPKEL  346 (735)
T ss_pred             HHHHHHHHHhCcccC
Confidence            888887777765543

>KOG2816 consensus Predicted transporter ADD1 (major facilitator superfamily) [General function prediction only]

Probab=95.26  E-value=0.19  Score=50.67  Aligned_cols=120  Identities=16%  Similarity=0.237  Sum_probs=92.0

Q ss_pred             HhCCChhHH--HHHHHHHHHhhhhhhhh-hhhhhhhhhccCchhHHHHHHHHHHHHHHHHHHhcchh-HHHHHHHHHHHH
Q 017795          165 SLGYADTSI--YVSMISIWNFLGRVGGG-YFSEAIVRKFAYPRPVAMAVAQVVMAFALLYYAIGWPG-EIYVTTVLVGLS  240 (366)
Q Consensus       165 ~~g~~~~~~--~~sl~~i~~~~g~~~~G-~lsD~~grr~~~~R~~~~~~~~~~~~~~~~l~~~~~~~-~l~~~~~l~G~~  240 (366)
                      .+|++..+.  +.++.++...++.++.. .++-.++.|+..      ..++....+..+++++.+.. ..+...++.+ .
T Consensus       271 ~f~w~~~~~s~~~~~~~~~~~i~~l~~~~~l~~~l~~~~~i------~lGl~~~~~~~~~~af~~~~w~~~~~~v~~~-~  343 (463)
T KOG2816|consen  271 KFGWNKKEFSDLLSLVSILGIISQLLLLPLLSSILGEKRLI------SLGLLSEFLQLLLFAFATETWMMFAAGVVVA-L  343 (463)
T ss_pred             ecCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHh------hHHHHHHHHHHHHHHHhccchhhhHHHHHHH-h
Confidence            468887765  77888888888887765 677777776533      77777788888888865544 4455544444 4


Q ss_pred             hhhhhhhHHHHHHHhhCCCchhhHHHHHHhHhhhhHHHhhhhHHHHHhhhhh
Q 017795          241 YGAHWAIVPAAASELFGLKSFGALYNFLTLASPAGSLIFSGVIASGIYDYYA  292 (366)
Q Consensus       241 ~g~~~~~~~~~~se~f~~~~~g~~~g~~~~~~~~G~~i~gp~i~G~l~d~~~  292 (366)
                      .+...+.+-+.++-+.+++++|.++++......+.+.+ +|.+.+.++..+.
T Consensus       344 ~~~~~pa~~s~~s~~v~~~e~g~v~~~is~i~~l~~~~-~~~~~~~i~~~t~  394 (463)
T KOG2816|consen  344 AGIVFPAIRAFASILVSPEEQGKVFGIISGIEGLSGVV-SPALYGNIFALTL  394 (463)
T ss_pred             hcchhHHHHhHHHhhcccccccchhhHHHHHHHHhhhh-hHHHHHHHHHHHH
Confidence            45667888889999999999999999999999999996 8999999987765

>PF07672 MFS_Mycoplasma: Mycoplasma MFS transporter; InterPro: IPR011699 These proteins share some similarity with members of the Major Facilitator Superfamily (MFS)

Probab=95.18  E-value=1.4  Score=40.89  Aligned_cols=141  Identities=10%  Similarity=0.096  Sum_probs=64.2

Q ss_pred             CCHHHHhhhhHHHHHHHHHHHhhhhHHHH-HhcHHH-HHHHhC-----------CChh-HHHHHHHHHHHhhhhhhhhhh
Q 017795          127 FTLPQALMKADFLLLFFSLVLASGSGLTV-IDNLGQ-ICQSLG-----------YADT-SIYVSMISIWNFLGRVGGGYF  192 (366)
Q Consensus       127 ~~~~~~l~~~~~~ll~~~~~~~~~~~~~~-~~~l~~-i~~~~g-----------~~~~-~~~~sl~~i~~~~g~~~~G~l  192 (366)
                      .+..+.+|+.+.|...+.+.+........ ...... +....+           ++.. ..+.-++..+.++|....|..
T Consensus        85 ~s~~~~LK~K~tw~w~~~Yg~wLv~~V~p~t~~~~~~~~~~s~~ni~~~~~~~~~~~~~~~~~I~fv~g~~~G~~~ig~~  164 (267)
T PF07672_consen   85 PSYKSILKEKETWKWILIYGIWLVVVVFPFTPSWFNILIWISPANIKSVVSGGGFNWIIPIFQILFVAGYFLGPFTIGLW  164 (267)
T ss_pred             chHHHHHccchHHHHHHHHHHHheeEEEeccchhHhHhhhcCcccccccccccccchhhHHHHHHHHHHHhhhceeeccc
Confidence            46778888888887666554433221110 011111 111111           1111 114445555556777777777


Q ss_pred             hhhhhhhccCchhHHHHHHHHHHHHHHHHHH---hcc---hhHHHHHHHHHHHHhhhhhhhHHHHHHHh--hCCCchhhH
Q 017795          193 SEAIVRKFAYPRPVAMAVAQVVMAFALLYYA---IGW---PGEIYVTTVLVGLSYGAHWAIVPAAASEL--FGLKSFGAL  264 (366)
Q Consensus       193 sD~~grr~~~~R~~~~~~~~~~~~~~~~l~~---~~~---~~~l~~~~~l~G~~~g~~~~~~~~~~se~--f~~~~~g~~  264 (366)
                      +-..-+|+.+- ...+..+.++..+..++..   ..+   ...+++..++.|++.=+..++.--...|.  ..+++.|..
T Consensus       165 nkt~~kRk~fi-~~~~~~gi~~~~l~~~~~~~~g~~~~~~~~~f~I~~Fl~G~f~WgiQ~ViL~lPhEyK~~~pk~ig~~  243 (267)
T PF07672_consen  165 NKTNYKRKPFI-HFIISLGIVFFVLSIVVVYFVGPGNAAGFAFFYIFGFLAGFFLWGIQGVILNLPHEYKGYNPKKIGIQ  243 (267)
T ss_pred             hhhhhhhhhHH-HHHHHHHHHHHHHHHHHHHHhCcchHHHHHHHHHHHHHHHHHHHhhhHHHhcChhhhcCCCcceehhH
Confidence            65544433220 0011122333333333311   112   23467777788877644444444444554  345555555


Q ss_pred             HHHH
Q 017795          265 YNFL  268 (366)
Q Consensus       265 ~g~~  268 (366)
                      +|+.
T Consensus       244 Fg~i  247 (267)
T PF07672_consen  244 FGLI  247 (267)
T ss_pred             HHHH
Confidence            5543

>PF01770 Folate_carrier: Reduced folate carrier; InterPro: IPR002666 The reduced folate carrier (a transmembrane glycoprotein) transports reduced folate into mammalian cells via the carrier mediated mechanism (as opposed to the receptor mediated mechanism) it also transports cytotoxic folate analogues used in chemotherapy [], such as methotrexate (MTX)

Probab=94.86  E-value=0.95  Score=44.83  Aligned_cols=149  Identities=10%  Similarity=0.116  Sum_probs=91.7

Q ss_pred             hCCChhHHHHHHHHHH---HhhhhhhhhhhhhhhhhhccCchhHHHHHHHHHHHHHHHHHH-hcchhHHHHHHHHHHHHh
Q 017795          166 LGYADTSIYVSMISIW---NFLGRVGGGYFSEAIVRKFAYPRPVAMAVAQVVMAFALLYYA-IGWPGEIYVTTVLVGLSY  241 (366)
Q Consensus       166 ~g~~~~~~~~sl~~i~---~~~g~~~~G~lsD~~grr~~~~R~~~~~~~~~~~~~~~~l~~-~~~~~~l~~~~~l~G~~~  241 (366)
                      .|++..+..--++.++   ....-+....++|.++-|+.+      .+..+...+...++. ..+...+-+.-++.|++.
T Consensus        35 kn~T~~qv~~~i~Pv~tYSyl~~l~~vflltd~l~Ykpvi------il~~~~~i~t~~lll~~~sv~~mq~~q~~yg~~~  108 (412)
T PF01770_consen   35 KNFTEEQVNNEIYPVWTYSYLAFLLPVFLLTDYLRYKPVI------ILQALSYIITWLLLLFGTSVLAMQLMQFFYGLAT  108 (412)
T ss_pred             cCCCHHHHHHhhhhHHHHHHHHHHHHHHHHHHHhhhhHHH------HHHHHHHHHHHHHHHHHCcHHHHHHHHHHHHHHH
Confidence            6787766522222222   233455678899999877544      333333233333333 344455666777788777


Q ss_pred             hhhhhhHHHHHHHhhCCCchhhHHHHHHhHhhhhHHHhhhhHHHHHhhhhhhhhhhhhhhccCCCCCcccCCCCCCcccC
Q 017795          242 GAHWAIVPAAASELFGLKSFGALYNFLTLASPAGSLIFSGVIASGIYDYYAEKQAGLLWKYNGNMLPVSFRDQETPTCLG  321 (366)
Q Consensus       242 g~~~~~~~~~~se~f~~~~~g~~~g~~~~~~~~G~~i~gp~i~G~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~g  321 (366)
                      ++ -...++++=...+++++..+.+....+.-+|..+ |..++-.+....+                             
T Consensus       109 a~-evay~sYiys~v~~~~yq~vts~~raa~l~g~~~-s~~lgQllvs~~~-----------------------------  157 (412)
T PF01770_consen  109 AA-EVAYYSYIYSVVDKEHYQKVTSYTRAATLVGRFI-SSLLGQLLVSFGG-----------------------------  157 (412)
T ss_pred             HH-HHHHHHHheeecCHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHhcC-----------------------------
Confidence            66 3555666666678888999988888887777775 6555444444332                             


Q ss_pred             CcchHHHHHHHHHHHHHHHHHHHHHHhhcHH
Q 017795          322 SICYSITCGIMAGLCIIAMVMSLIVVHRTKS  352 (366)
Q Consensus       322 ~~~~~~~f~i~~~~~~~~~~~~~~~~~~~r~  352 (366)
                       .+|...+++..+...++++.++++....|.
T Consensus       158 -~sy~~L~~isl~~~~~a~~~~~fLP~~~~S  187 (412)
T PF01770_consen  158 -VSYFQLNYISLASVSLALLIALFLPMPKRS  187 (412)
T ss_pred             -CCHHHHHHHHHHHHHHHHHHHHHcCCCCcc
Confidence             148888888887777777777776554443

Mammalian cells have an absolute requirement for exogenous folates which are needed for growth, and biosynthesis of macromolecules [].; GO: 0005542 folic acid binding, 0008518 reduced folate carrier activity, 0006810 transport, 0016020 membrane

>KOG2325 consensus Predicted transporter/transmembrane protein [General function prediction only]

Probab=94.77  E-value=0.15  Score=51.54  Aligned_cols=83  Identities=10%  Similarity=0.253  Sum_probs=63.3

Q ss_pred             HHHHhhhhhhhHHHHHHHhhCCCchhhHHHHHHhHhhhhHHHhhhhHHHHHhhhhhhhhhhhhhhccCCCCCcccCCCCC
Q 017795          237 VGLSYGAHWAIVPAAASELFGLKSFGALYNFLTLASPAGSLIFSGVIASGIYDYYAEKQAGLLWKYNGNMLPVSFRDQET  316 (366)
Q Consensus       237 ~G~~~g~~~~~~~~~~se~f~~~~~g~~~g~~~~~~~~G~~i~gp~i~G~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~  316 (366)
                      +|.+.-.......+.-++..++++.++..+++.....++..+ +|++...++...|                        
T Consensus       398 ~g~~~P~~~~~~~tlySkiLgp~~q~~~qg~~~~~~s~~~~~-~~~~~t~~~~~~g------------------------  452 (488)
T KOG2325|consen  398 FGIAFPFISTALDTLYSKILGPRDQGTMQGVFSISGSIARVV-GPIFSTAIFTLSG------------------------  452 (488)
T ss_pred             eccccccccchHHHHHHHHhCCccccceeEEEEeccchhhhh-hHHHHhhhHHhcC------------------------
Confidence            444444334455667899999999999999999999999996 9999999998887                        


Q ss_pred             CcccCCcchHHHHHHHHHHHHHHHHHHHHHHhhcHH
Q 017795          317 PTCLGSICYSITCGIMAGLCIIAMVMSLIVVHRTKS  352 (366)
Q Consensus       317 ~~c~g~~~~~~~f~i~~~~~~~~~~~~~~~~~~~r~  352 (366)
                              +++.+.+.++..++...+..++.+|.++
T Consensus       453 --------~~~v~~~~~~~~l~~~~l~~~~~~r~~~  480 (488)
T KOG2325|consen  453 --------PRPVWIILLCLLLVVAALWIVFLKRLVP  480 (488)
T ss_pred             --------ccHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence                    8888777776666666666666555443

>PF03092 BT1: BT1 family; InterPro: IPR004324 Members of this family are transmembrane proteins

Probab=94.71  E-value=0.84  Score=45.64  Aligned_cols=116  Identities=16%  Similarity=0.167  Sum_probs=69.5

Q ss_pred             HHHHHHHHHhhhhhhhhhhhhhhhhhccCchhHHHHHHHHHHHHHHHH---HHh--------cchhHHHHHHHHHHHHhh
Q 017795          174 YVSMISIWNFLGRVGGGYFSEAIVRKFAYPRPVAMAVAQVVMAFALLY---YAI--------GWPGEIYVTTVLVGLSYG  242 (366)
Q Consensus       174 ~~sl~~i~~~~g~~~~G~lsD~~grr~~~~R~~~~~~~~~~~~~~~~l---~~~--------~~~~~l~~~~~l~G~~~g  242 (366)
                      +.+...+.+.++.+++..+-.++.++..+ |..+.... ++.++..+.   +..        .+....+.-.++..+..+
T Consensus       256 f~~~~~~vg~~~~l~g~~~y~~~~~~~~~-R~~~~~t~-~~~~~~~l~~~~lv~~~n~~~Gi~d~~f~lgd~~l~~~~~~  333 (433)
T PF03092_consen  256 FYGTLSIVGSIASLLGILLYRKYFSNWSW-RRIFVVTT-LVSVLASLFDLLLVTRWNLDLGIPDQWFALGDTILEEVIGM  333 (433)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhCCCH-HHHHHHHH-HHHHHHhcccEEEEEEEeeeeCcCCeEEEEEhHHHHHHHHH
Confidence            44444455556666666666667666655 44433333 222222221   100        111112223445555555


Q ss_pred             hhhhhHHHHHHHhhCCCchhhHHHHHHhHhhhhHHHhhhhHHHHHhhhhh
Q 017795          243 AHWAIVPAAASELFGLKSFGALYNFLTLASPAGSLIFSGVIASGIYDYYA  292 (366)
Q Consensus       243 ~~~~~~~~~~se~f~~~~~g~~~g~~~~~~~~G~~i~gp~i~G~l~d~~~  292 (366)
                      ..+-.....++++-|+..=|+.|+++....++|..+ +..++..+.+..+
T Consensus       334 i~~mP~lvl~a~lcP~G~Egt~yall~s~~Nlg~~~-s~~lg~~l~~~~~  382 (433)
T PF03092_consen  334 IAFMPSLVLAARLCPKGSEGTVYALLASFSNLGSSV-SSTLGAFLMELFG  382 (433)
T ss_pred             HHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHHHH-HHHHHHHHHHHcC
Confidence            555555568899999999999999999999999995 8888888777665

Several are Leishmania putative proteins that are thought to be pteridine transporters [, ]. This family also contains five putative Arabidopsis thaliana proteins of unknown function as well as two predicted prokaryotic proteins (from the cyanobacteria Synechocystis and Synechococcus).

>KOG1237 consensus H+/oligopeptide symporter [Amino acid transport and metabolism]

Probab=93.98  E-value=0.54  Score=48.75  Aligned_cols=150  Identities=17%  Similarity=0.256  Sum_probs=97.7

Q ss_pred             hcHHHHHHHhCCChhHH--HHHHHHHHHhhhhhhhhhhhhhh-hhhccCchhHHHHHHHHHHHHHHHHHH-----h---c
Q 017795          157 DNLGQICQSLGYADTSI--YVSMISIWNFLGRVGGGYFSEAI-VRKFAYPRPVAMAVAQVVMAFALLYYA-----I---G  225 (366)
Q Consensus       157 ~~l~~i~~~~g~~~~~~--~~sl~~i~~~~g~~~~G~lsD~~-grr~~~~R~~~~~~~~~~~~~~~~l~~-----~---~  225 (366)
                      +.+.++...++.....+  .+..++-..+...+++++++|.+ ||-+.+      .++.++..+|..++.     .   .
T Consensus        59 nlv~ylt~~~~~~~~~aa~~v~~f~G~~~~~~l~g~~laD~f~gry~tI------~~~s~i~~~G~~~lt~~a~~~~l~p  132 (571)
T KOG1237|consen   59 NLVTYLTLELHASGGGAANNVNAFGGTQFLLPLLGAFLADSFLGRYFTI------NIGSLISLLGLFGLTLSAMIPALLP  132 (571)
T ss_pred             HHHHHHHHHhccchHHHHHHHHHHhhHHHHHHHHHHHHHHHHhHHHHHH------HHHHHHHHHHHHHHHHHHHhhhcCC
Confidence            44445566777766544  77777777788889999999997 554333      444444444433221     0   0


Q ss_pred             -------c------h-----hHHHHHHHHHHHHhhhhhhhHHHHHHHhhC---CC---chhhHHHHHHhHhhhhHHHhhh
Q 017795          226 -------W------P-----GEIYVTTVLVGLSYGAHWAIVPAAASELFG---LK---SFGALYNFLTLASPAGSLIFSG  281 (366)
Q Consensus       226 -------~------~-----~~l~~~~~l~G~~~g~~~~~~~~~~se~f~---~~---~~g~~~g~~~~~~~~G~~i~gp  281 (366)
                             .      +     ..++.+..+..+|.|+.-+...+.-+|-|+   ++   ....-++......++|..+ +.
T Consensus       133 ~~~~~~~~~~~c~~~s~~q~~~~~~~l~lia~G~gg~r~~~~~fGadQfd~~~~~~~~~~~~fFnW~yf~~~~g~l~-a~  211 (571)
T KOG1237|consen  133 FMCKFKPGGNVCESPSKLQLAVLYGALYLIALGAGGIRPCLLAFGADQFDELDPVEVKGIPSFFNWFYFSQNGGALL-AQ  211 (571)
T ss_pred             ccccCCCCCCcccCcchHHHHHHHHHHHHheeccCCCCCcchhhcccccCccCcchhhCcccchhHHHHHHHHHHHH-HH
Confidence                   0      0     145566667777888888888888888887   22   2447788888888888886 65


Q ss_pred             hHHHHHhhhhhhhhhhhhhhccCCCCCcccCCCCCCcccCCcchHHHHHHHHHHHHHHHHHHHH
Q 017795          282 VIASGIYDYYAEKQAGLLWKYNGNMLPVSFRDQETPTCLGSICYSITCGIMAGLCIIAMVMSLI  345 (366)
Q Consensus       282 ~i~G~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~g~~~~~~~f~i~~~~~~~~~~~~~~  345 (366)
                      .+.-++-|..+                                |.+.|.+..++.+++.++.+.
T Consensus       212 t~~vyiq~~~~--------------------------------w~lgf~i~~~~~~lai~iF~~  243 (571)
T KOG1237|consen  212 TVLVYIQDNVG--------------------------------WKLGFGIPTVLNALAILIFLP  243 (571)
T ss_pred             HHHHhhhhccc--------------------------------ceeeccHHHHHHHHHHHHHHc
Confidence            55555444443                                999999988877776655443

>KOG3574 consensus Acetyl-CoA transporter [Inorganic ion transport and metabolism]

Probab=93.31  E-value=0.69  Score=45.28  Aligned_cols=136  Identities=18%  Similarity=0.255  Sum_probs=77.6

Q ss_pred             HHHHHHHHHhhhhHHHHHhcHHHHHHHhCCChhHHHHHHHHHHHhhhhhhhhhhhh-----hhhhhccCchhHHHHHHHH
Q 017795          139 LLLFFSLVLASGSGLTVIDNLGQICQSLGYADTSIYVSMISIWNFLGRVGGGYFSE-----AIVRKFAYPRPVAMAVAQV  213 (366)
Q Consensus       139 ~ll~~~~~~~~~~~~~~~~~l~~i~~~~g~~~~~~~~sl~~i~~~~g~~~~G~lsD-----~~grr~~~~R~~~~~~~~~  213 (366)
                      .++.+.+.. .+.-++....+|.+.+.-|.+-+.....-+.-+.+.-.++|.++.|     |+|||+.+-     .-++.
T Consensus        34 llLl~LYll-QGiP~GL~~~iP~lL~ak~vSyt~~a~fS~ay~P~sLKllWaPiVDs~y~k~~GrrksWv-----vp~q~  107 (510)
T KOG3574|consen   34 LLLLFLYLL-QGIPLGLIGAIPLLLQAKGVSYTSQAIFSFAYWPFSLKLLWAPIVDSVYSKRFGRRKSWV-----VPCQY  107 (510)
T ss_pred             HHHHHHHHH-cCCchhHhhhhHHHhcCCCcchhhhhhhhhhhhHHHHHHHHHhhhHHHHHHhhcccccee-----eehHH
Confidence            333333333 3444455568999998776654433222333467777889999999     888876552     33444


Q ss_pred             HHHHHHHHHHh------c-c---hhH--HHHHHHHHHHHhhhhhhhHHHHHHHhhCCCchhhHHHHHHhHhhhhHHHhhh
Q 017795          214 VMAFALLYYAI------G-W---PGE--IYVTTVLVGLSYGAHWAIVPAAASELFGLKSFGALYNFLTLASPAGSLIFSG  281 (366)
Q Consensus       214 ~~~~~~~l~~~------~-~---~~~--l~~~~~l~G~~~g~~~~~~~~~~se~f~~~~~g~~~g~~~~~~~~G~~i~gp  281 (366)
                      +.+..+++++.      + +   +..  +-+..++.-+..+.+-..+=++.-.+..+++.|-+......+...|-++ |.
T Consensus       108 llG~~mllLs~~v~~~~g~ng~~p~v~~lt~~f~LLnflaAtQDIAVDgwALtmLs~e~lgyaST~q~Vg~~~GyfL-~~  186 (510)
T KOG3574|consen  108 LLGLFMLLLSYLVDRGLGGNGGLPNVVALTLLFLLLNFLAATQDIAVDGWALTMLSRENLGYASTCQSVGQTAGYFL-GN  186 (510)
T ss_pred             HHHHHHHHHhhCCCcccccCCCCcchHHHHHHHHHHHHHHhhhhhhhhHHHHHhcCHhhcCchhHHHHHHHhhhHHh-hc
Confidence            43433333331      1 1   121  1123344455555555555566667777788777777767777777775 53

>KOG0637 consensus Sucrose transporter and related proteins [Carbohydrate transport and metabolism]

Probab=93.04  E-value=0.24  Score=49.37  Aligned_cols=125  Identities=14%  Similarity=0.096  Sum_probs=75.2

Q ss_pred             HHhcHHHHHHHhCCChhHH--HHHHHHHHHhhhhhhhhhhhhhhhhhccCchhHHHHHHHHHHHHHHHHHHh-c------
Q 017795          155 VIDNLGQICQSLGYADTSI--YVSMISIWNFLGRVGGGYFSEAIVRKFAYPRPVAMAVAQVVMAFALLYYAI-G------  225 (366)
Q Consensus       155 ~~~~l~~i~~~~g~~~~~~--~~sl~~i~~~~g~~~~G~lsD~~grr~~~~R~~~~~~~~~~~~~~~~l~~~-~------  225 (366)
                      =...++++.+++|.+..-.  ..-.-.+.+++.+|+.|..|||.-.|+.-+||.+.+. .....++.+++.. .      
T Consensus        51 elsy~tPyl~~lGvphk~~S~iw~~gPi~G~~vQP~vG~~SDrc~sr~GRRRPfI~~~-s~~i~~~l~Lig~aaDig~~l  129 (498)
T KOG0637|consen   51 ELSYLTPYLQSLGVPHKWSSIIWLCGPLSGLLVQPLVGSASDRCTSRYGRRRPFILAG-SLLIAVSLFLIGYAADIGLLL  129 (498)
T ss_pred             HhccccHHHHHcCCCcccccccccccccccceecccccccccccccccccccchHHHh-hHHHHHHHhhhhhHhhhhHHh
Confidence            3456788999999875432  3333345567788999999998766555555544443 3333444444321 1      


Q ss_pred             --ch----hHHHHHHHHHHHH-----hhhhhhhHHHHHHHhhCCCchhh-HHHHHHhHhhhhHHHhhh
Q 017795          226 --WP----GEIYVTTVLVGLS-----YGAHWAIVPAAASELFGLKSFGA-LYNFLTLASPAGSLIFSG  281 (366)
Q Consensus       226 --~~----~~l~~~~~l~G~~-----~g~~~~~~~~~~se~f~~~~~g~-~~g~~~~~~~~G~~i~gp  281 (366)
                        +.    ...-+..++.|+.     .-......-+...|+...++..+ +++.......+|+.+ |-
T Consensus       130 gd~~~~~~~~rai~~~~lg~~LLD~A~n~~qgp~ra~L~Dl~~~d~~~~~Ans~f~~f~avGnvL-GY  196 (498)
T KOG0637|consen  130 GDNERKPVKPRAIVLFILGFWLLDVANNTLQGPCRALLADLARGDAKKTRANSVFSFFMAVGNVL-GY  196 (498)
T ss_pred             cCCcccccchHHHHHHHHHhHHHHhhhhhhhhhHHHHHHHhccChhhhhccchhHHHHHHhccee-ee
Confidence              11    1122333333433     22334445568899988777666 888888888888885 53

>KOG3098 consensus Uncharacterized conserved protein [Function unknown]

Probab=92.48  E-value=0.37  Score=48.44  Aligned_cols=102  Identities=11%  Similarity=0.081  Sum_probs=78.8

Q ss_pred             HHHHHHHHHhhhhhhhhhhhhhhhhhccCchhHHHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHhhhhhhhHHHHHH
Q 017795          174 YVSMISIWNFLGRVGGGYFSEAIVRKFAYPRPVAMAVAQVVMAFALLYYAIGWPGEIYVTTVLVGLSYGAHWAIVPAAAS  253 (366)
Q Consensus       174 ~~sl~~i~~~~g~~~~G~lsD~~grr~~~~R~~~~~~~~~~~~~~~~l~~~~~~~~l~~~~~l~G~~~g~~~~~~~~~~s  253 (366)
                      ..++......+..++++.+.|+++.|+.+      .++......-.+.+...|.+.+|+...+.|+|.+..|.-...+.+
T Consensus        55 ~~aiiY~~ftv~~l~~psiv~~i~~K~~l------v~ga~~y~~f~~gfl~~N~y~~yfssallG~Gaallw~GqG~ylt  128 (461)
T KOG3098|consen   55 GQAIIYAFFTVSCLFAPSIVNFLGPKWAL------VIGATCYAAFPLGFLFPNSYYLYFSSALLGFGAALLWTGQGGYLT  128 (461)
T ss_pred             HHHHHHHHHHHHHHhhHHHHHHhhHHHHH------HHHhHHHHHHHHHHHhcchHHHHHHHHHhhhhHHheecccceehh
Confidence            46677777888899999999999887554      555544444444444567788999999999999998999999999


Q ss_pred             HhhCCCchhhHHHHHHhHhhhhHHHhhhh
Q 017795          254 ELFGLKSFGALYNFLTLASPAGSLIFSGV  282 (366)
Q Consensus       254 e~f~~~~~g~~~g~~~~~~~~G~~i~gp~  282 (366)
                      +....+...+..++.......+.++ |..
T Consensus       129 ~~st~~tie~Nisi~Wai~~~~li~-Ggi  156 (461)
T KOG3098|consen  129 SNSTRETIERNISIFWAIGQSSLII-GGI  156 (461)
T ss_pred             hcCChhhHHHHHHHHHHHHHHHHHh-hhH
Confidence            9999888888888877777666664 543

>PF06963 FPN1: Ferroportin1 (FPN1); InterPro: IPR009716 This entry represents the solute carrier family 40 member 1 family of proteins, also known as Ferroportin 1

Probab=90.70  E-value=3.8  Score=41.00  Aligned_cols=156  Identities=17%  Similarity=0.141  Sum_probs=88.3

Q ss_pred             CHHHHhhhhHHHHHHHHHHHhhhhHHHHHhcHHHHHHHhCCChhHH--HHHHHHHHHhhhhhhhhhhhhhhhhhccCchh
Q 017795          128 TLPQALMKADFLLLFFSLVLASGSGLTVIDNLGQICQSLGYADTSI--YVSMISIWNFLGRVGGGYFSEAIVRKFAYPRP  205 (366)
Q Consensus       128 ~~~~~l~~~~~~ll~~~~~~~~~~~~~~~~~l~~i~~~~g~~~~~~--~~sl~~i~~~~g~~~~G~lsD~~grr~~~~R~  205 (366)
                      .|+..++++.|+ -.+++.+.+...+.+...+-.++.+.|+++..+  +=++-.+.+..|.+...++-+|+|-.+.-   
T Consensus       251 ~w~~Y~~q~vfl-as~alalLY~TVLsf~~lmt~yl~~~G~s~~~igi~R~~gav~Gl~gT~~~p~l~~riGlvr~G---  326 (432)
T PF06963_consen  251 GWRTYFRQPVFL-ASFALALLYFTVLSFGGLMTAYLKSQGYSPSVIGIFRGLGAVFGLLGTWVYPWLMKRIGLVRAG---  326 (432)
T ss_pred             cHHHHHhCHHHH-HHHHHHHHHHHHhcCcHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchhhH---
Confidence            466666776544 334444444444555566667888889998865  66666777788888888888888754322   


Q ss_pred             HHHHHHHH-HHHHHHHHHH-hcch-hHHHHHHHHHHHH--hhhhhhhHH---HHHHHhhCCCchhhHHHHHHhHhhhhHH
Q 017795          206 VAMAVAQV-VMAFALLYYA-IGWP-GEIYVTTVLVGLS--YGAHWAIVP---AAASELFGLKSFGALYNFLTLASPAGSL  277 (366)
Q Consensus       206 ~~~~~~~~-~~~~~~~l~~-~~~~-~~l~~~~~l~G~~--~g~~~~~~~---~~~se~f~~~~~g~~~g~~~~~~~~G~~  277 (366)
                      .+....+. ...++...+. ..++ .......++.|+.  --+.|+.-.   -++-|..+.++||+..|.-+...++-..
T Consensus       327 ~~~l~~q~~~L~~~v~~~~~~~~~~~~~s~~~l~~gi~~SR~GLW~fDL~~~qi~Qe~V~~~~Rg~v~gvq~sl~~lf~l  406 (432)
T PF06963_consen  327 LWSLWWQWVCLALCVVSFWAPGSPFSSISAYLLLGGIALSRIGLWSFDLAVTQIMQENVPESERGAVSGVQNSLQSLFEL  406 (432)
T ss_pred             HHHHHHHHHHHHHHHHHHhcCCCCchhhHHHHHHHHHHHHHHHHHhhhHHHHHhhcccCCHHHhhHHHHHHHHHHHHHHH
Confidence            12222222 2222222222 2322 2222233333322  223343332   2556778888999999998888887777


Q ss_pred             HhhhhHHHHHhh
Q 017795          278 IFSGVIASGIYD  289 (366)
Q Consensus       278 i~gp~i~G~l~d  289 (366)
                      +  -.+.+.+..
T Consensus       407 l--~~~~~ii~~  416 (432)
T PF06963_consen  407 L--SFVLTIIFP  416 (432)
T ss_pred             H--HHHHHhccC
Confidence            4  344454443

It is thought to be involved in iron export from duodenal epithelial cells and also in transfer of iron between maternal and fetal circulation. This family of proteins is known to be localised in the basolateral membrane of polarized epithelial cells [].; GO: 0005381 iron ion transmembrane transporter activity, 0034755 iron ion transmembrane transport, 0016021 integral to membrane

>PF06779 DUF1228: Protein of unknown function (DUF1228); InterPro: IPR010645 This entry represents the N terminus of several putative bacterial membrane proteins, which may be sugar transporters

Probab=90.50  E-value=1.5  Score=33.44  Aligned_cols=66  Identities=8%  Similarity=-0.004  Sum_probs=43.7

Q ss_pred             HHHHHhcHHHHHHHhCCChhHH--HHHHHHHHHhhhhhhhhhhhhhhhhhccCchhHHHHHHHHHHHHHHHHHH
Q 017795          152 GLTVIDNLGQICQSLGYADTSI--YVSMISIWNFLGRVGGGYFSEAIVRKFAYPRPVAMAVAQVVMAFALLYYA  223 (366)
Q Consensus       152 ~~~~~~~l~~i~~~~g~~~~~~--~~sl~~i~~~~g~~~~G~lsD~~grr~~~~R~~~~~~~~~~~~~~~~l~~  223 (366)
                      -+.+...+|.+.++.+++.++.  ..+.-.++..+|.+...++.++..++.      ++..+.++..+..+.++
T Consensus         8 RFayTplLP~M~~~~~ls~~~ag~lasaNy~GYL~GAl~~~~~~~~~~~~~------~~~~~l~~~~~~~~~ma   75 (85)
T PF06779_consen    8 RFAYTPLLPLMQADGGLSLSQAGWLASANYLGYLVGALLASRLPRHSRPRR------LLRAGLLLTVLSTAAMA   75 (85)
T ss_pred             HHHHHhHhHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhcccHHH------HHHHHHHHHHHHHHHHH
Confidence            3457778999999999998766  666777777788888877776643322      22445555555444444

Note that many members are hypothetical proteins.

>PF03219 TLC: TLC ATP/ADP transporter; InterPro: IPR004667 These proteins are members of the ATP:ADP Antiporter (AAA) family, which consists of nucleotide transporters that have 12 GES predicted transmembrane regions

Probab=90.12  E-value=17  Score=37.03  Aligned_cols=42  Identities=19%  Similarity=0.273  Sum_probs=36.0

Q ss_pred             hHHHHHHHhhCCCchhhHHHHHHhHhhhhHHHhhhhHHHHHhh
Q 017795          247 IVPAAASELFGLKSFGALYNFLTLASPAGSLIFSGVIASGIYD  289 (366)
Q Consensus       247 ~~~~~~se~f~~~~~g~~~g~~~~~~~~G~~i~gp~i~G~l~d  289 (366)
                      +.|..+.|++..++..+.|+++.+++++|.++ |+.+..++..
T Consensus       164 LFW~fAN~itt~~eAKRfYpl~g~ganigli~-sG~~~~~~~~  205 (491)
T PF03219_consen  164 LFWGFANEITTVEEAKRFYPLFGLGANIGLIF-SGQLTSYFSS  205 (491)
T ss_pred             HHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHH
Confidence            46888999999999999999999999999996 7777766665

One protein from Rickettsia prowazekii functions to take up ATP from the eukaryotic cell cytoplasm into the bacterium in exchange for ADP. Five AAA family paralogues are encoded within the genome of R. prowazekii. This organism transports UMP and GMP but not CMP, and it seems likely that one or more of the AAA family paralogues are responsible. The genome of Chlamydia trachomatis encodes two AAA family members, Npt1 and Npt2, which catalyse ATP/ADP exchange and GTP, CTP, ATP and UTP uptake probably employing a proton symport mechanism. Two homologous adenylate translocators of Arabidopsis thaliana are postulated to be localized to the intracellular plastid membrane where they function as ATP importers.; GO: 0005471 ATP:ADP antiporter activity, 0005524 ATP binding, 0006810 transport, 0016021 integral to membrane

>KOG4332 consensus Predicted sugar transporter [Carbohydrate transport and metabolism]

Probab=89.74  E-value=0.64  Score=43.46  Aligned_cols=92  Identities=14%  Similarity=0.119  Sum_probs=53.8

Q ss_pred             HHHhCCChhHH-HHHHHHH-HHhhhhhhhhhhhhhhhhhccCchhHHHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHH
Q 017795          163 CQSLGYADTSI-YVSMISI-WNFLGRVGGGYFSEAIVRKFAYPRPVAMAVAQVVMAFALLYYAIGWPGEIYVTTVLVGLS  240 (366)
Q Consensus       163 ~~~~g~~~~~~-~~sl~~i-~~~~g~~~~G~lsD~~grr~~~~R~~~~~~~~~~~~~~~~l~~~~~~~~l~~~~~l~G~~  240 (366)
                      .+.+|+...++ ..-+.++ ..++.+.+.|.+.|+.|||+..   ....+..++.++.   =-.+....+++++++-|+.
T Consensus        64 YstYgFgkG~IgqLfiaGfgSsmLFGtivgSLaDkqGRKrac---vtycitYiLsCiT---KhSpqYkVLmVGR~LGGia  137 (454)
T KOG4332|consen   64 YSTYGFGKGDIGQLFIAGFGSSMLFGTIVGSLADKQGRKRAC---VTYCITYILSCIT---KHSPQYKVLMVGRVLGGIA  137 (454)
T ss_pred             ehhcCccCCccceeeecccchHHHHHHHHHHHHhhhccccce---eeehHHHHHHHHh---hcCCceEEEeehhhhhhHH
Confidence            45667766554 2222222 2345566778899999998754   2223333333332   1123344678999999998


Q ss_pred             hhhhhhhHHH-HHHHhhCCCc
Q 017795          241 YGAHWAIVPA-AASELFGLKS  260 (366)
Q Consensus       241 ~g~~~~~~~~-~~se~f~~~~  260 (366)
                      ....++..-+ +++|.-..+.
T Consensus       138 TsLLFSaFEsWliaEHnekr~  158 (454)
T KOG4332|consen  138 TSLLFSAFESWLIAEHNEKRG  158 (454)
T ss_pred             HHHHHHHHHHHHHHHhhhccC
Confidence            8777776655 5667654443

>PF01733 Nucleoside_tran: Nucleoside transporter; InterPro: IPR002259 Delayed-early response (DER) gene products include growth progression factors and several unknown products of novel cDNAs

Probab=89.07  E-value=0.14  Score=48.74  Aligned_cols=99  Identities=11%  Similarity=0.126  Sum_probs=2.8

Q ss_pred             HHHHHHHHHhhhhhhhhhhhhhhh-hhccCchhHHH-HHHHHHHHHHHHHHH-----------hcchhHHHHHHHHHHHH
Q 017795          174 YVSMISIWNFLGRVGGGYFSEAIV-RKFAYPRPVAM-AVAQVVMAFALLYYA-----------IGWPGEIYVTTVLVGLS  240 (366)
Q Consensus       174 ~~sl~~i~~~~g~~~~G~lsD~~g-rr~~~~R~~~~-~~~~~~~~~~~~l~~-----------~~~~~~l~~~~~l~G~~  240 (366)
                      ...+++++..+||.+.++.-  +. ++   +|.++. .+.=+++...++++.           ..+....++..+++|+.
T Consensus       187 ~fl~Fn~gD~iGR~l~~~~~--~~~~~---~~~l~~~s~~R~~fiPlf~~cn~~p~~~~~~~~~~~d~~~~i~~~l~g~T  261 (309)
T PF01733_consen  187 LFLLFNLGDFIGRFLASWPR--WPGPS---PRWLWILSLLRFLFIPLFLLCNVQPRPRYLPVLFNSDAWFIILMLLFGFT  261 (309)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             HHHHHHHHHHhcchhcceeE--ecccc---cccHHHHHHHHHHHHHHHHHHHhhcccccCCCcccchHHHHHHHHHHHHc
Confidence            56678999999999888742  22 11   111111 111122222222221           22334445667788888


Q ss_pred             hhhhhhhHHHHHHHhhCCCchhhHHHHHHhHhhhhHH
Q 017795          241 YGAHWAIVPAAASELFGLKSFGALYNFLTLASPAGSL  277 (366)
Q Consensus       241 ~g~~~~~~~~~~se~f~~~~~g~~~g~~~~~~~~G~~  277 (366)
                      .|-..++.....++...++++..+-.++...-.+|-.
T Consensus       262 NGyl~tl~m~~~p~~v~~~e~e~aG~~~~~~L~~Gl~  298 (309)
T PF01733_consen  262 NGYLSTLAMMYAPKSVSPEERELAGSVMSFFLSFGLF  298 (309)
T ss_dssp             -----HHHH----------------------------
T ss_pred             cchhhhceeeeCCCcCCHHHHHHHHHHHHHHHHHHHH
Confidence            7776677777777877777777766666666555555

Murine and human cDNAs from one novel DER gene (DER12) have been characterised to identify its product and to examine its role in the growth response []. Both sequences encode a hydrophobic 36kDa protein that is predicted to contain 8 transmembrane (TM) domains. The protein has been localised to the nucleolus, where its concentration increases following mitogen stimulation []. Although the function of the protein is unknown, its identification as a nucleolar gene transcriptionally activated by growth factors implicates it as participating in the proliferative response []. Sequence analysis reveals the protein to share a high degree of similarity with the C-terminal portion of equilibrative nucleoside transporters. These proteins are integral membrane proteins which enable the movement of hydrophilic nucleosides and nucleoside analogs down their concentration gradients across cell membranes. ENT family members have been identified in humans, mice, fish, tunicates, slime molds, and bacteria []. ; GO: 0005337 nucleoside transmembrane transporter activity, 0006810 transport, 0016020 membrane; PDB: 1HXI_A.

>PF13000 Acatn: Acetyl-coenzyme A transporter 1; InterPro: IPR024371 Acetyl-coenzyme A transporter 1 (also known as acatn) is a multipass transmembrane protein that appears to promote 9-O-acetylation in gangliosides [, ]

Probab=89.00  E-value=29  Score=35.44  Aligned_cols=99  Identities=16%  Similarity=0.188  Sum_probs=57.5

Q ss_pred             HhhhhhhhHHHHHHHhhCCCchhhHHHHHHhHhhhhHHHhhhhHHHHHhhhhhhhhhhhhhhccCCCCCcc-cCCCCCCc
Q 017795          240 SYGAHWAIVPAAASELFGLKSFGALYNFLTLASPAGSLIFSGVIASGIYDYYAEKQAGLLWKYNGNMLPVS-FRDQETPT  318 (366)
Q Consensus       240 ~~g~~~~~~~~~~se~f~~~~~g~~~g~~~~~~~~G~~i~gp~i~G~l~d~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~  318 (366)
                      ..-.++....+.-+.+..+..=|+.+-++|+.+++|+- .-..+.=++.|....+.=.     ........ ....+...
T Consensus       418 ~stvmFVai~AFharISDP~IGGTYMTLLNTvSNLGGt-WP~~~vL~lVD~fT~~~C~-----~~~t~~~~c~~~~~k~~  491 (544)
T PF13000_consen  418 MSTVMFVAIMAFHARISDPAIGGTYMTLLNTVSNLGGT-WPRTFVLWLVDYFTVATCT-----VPGTNSFSCSSDAEKEQ  491 (544)
T ss_pred             HHHHHHHHHHHHHhhccCcccchHHHHHHHHHHhcCCC-chHHHHHHHhhhccccccC-----CCCCCCceeccHHHHHH
Confidence            33444555555667778888999999999999999998 4455666777765421100     00000000 01112234


Q ss_pred             c---cCCcch--HHHHHHHHHHHHHHHHHHH
Q 017795          319 C---LGSICY--SITCGIMAGLCIIAMVMSL  344 (366)
Q Consensus       319 c---~g~~~~--~~~f~i~~~~~~~~~~~~~  344 (366)
                      |   .|-.|-  |=.+++..++|++..++.+
T Consensus       492 Ct~~~GG~C~i~rDGYYi~~~lCvviGi~~~  522 (544)
T PF13000_consen  492 CTKAGGGTCVIIRDGYYITNILCVVIGIVLW  522 (544)
T ss_pred             HhhCCCCeEEEEeccchhhhHHHHHHHHHHH
Confidence            6   355564  6677887777776555443

This entry represents acatn and its homologues.; GO: 0008521 acetyl-CoA transporter activity, 0016021 integral to membrane

>KOG3762 consensus Predicted transporter [General function prediction only]

Probab=88.83  E-value=0.47  Score=48.28  Aligned_cols=48  Identities=13%  Similarity=0.252  Sum_probs=39.8

Q ss_pred             HHhcHHHHHHHhCCChhHH--HHHHHHHHHhhhhhhhhhhhhhhhhhccC
Q 017795          155 VIDNLGQICQSLGYADTSI--YVSMISIWNFLGRVGGGYFSEAIVRKFAY  202 (366)
Q Consensus       155 ~~~~l~~i~~~~g~~~~~~--~~sl~~i~~~~g~~~~G~lsD~~grr~~~  202 (366)
                      +...++.+.+.+|+++...  ++.+--+..+++.|++|+++||+-+|+..
T Consensus        30 l~pll~vy~kQLGl~p~~~Gtl~g~~P~v~~L~~P~~g~~Adr~r~~r~l   79 (618)
T KOG3762|consen   30 LFPLLAVYFKQLGLNPAVVGTLTGTLPLVEFLAAPLWGFLADRYRKRRPL   79 (618)
T ss_pred             cchHHHHHHHHcCCCHHHhhhhhhHHHHHHHHhHHHHHHHHHHHHhcCch
Confidence            3456778889999998876  77777888999999999999999876554

>KOG1479 consensus Nucleoside transporter [Nucleotide transport and metabolism]

Probab=88.14  E-value=25  Score=34.78  Aligned_cols=127  Identities=11%  Similarity=0.026  Sum_probs=55.4

Q ss_pred             HHHHHHHHHHHhhhhHHHHHhcHHHHHHHh-CCChhHHHHHHHHHHHhhhhhhhhhhhhhhhhhccCchhHHHHHHHHHH
Q 017795          137 DFLLLFFSLVLASGSGLTVIDNLGQICQSL-GYADTSIYVSMISIWNFLGRVGGGYFSEAIVRKFAYPRPVAMAVAQVVM  215 (366)
Q Consensus       137 ~~~ll~~~~~~~~~~~~~~~~~l~~i~~~~-g~~~~~~~~sl~~i~~~~g~~~~G~lsD~~grr~~~~R~~~~~~~~~~~  215 (366)
                      .++..++...-.....-.+++.-+++.+.+ +.+.+..+.+.+.+.+.+..++.-.+=-+...|... |-........+.
T Consensus        19 v~~i~~llGiG~LlpWN~fiTa~~y~~~~~~~~~~~~~F~~~~~~~a~i~~ll~~~~n~~~~~~~~~-~~~~~l~~~~il   97 (406)
T KOG1479|consen   19 VYLIFLLLGIGTLLPWNMFITASDYYYYRFPGYHNSKNFTSSYTLAAQIPLLLFNLLNAFLNTRLRT-RVGYLLSLIAIL   97 (406)
T ss_pred             HHHHHHHHhcccccchHhhhccHHHHHhhcCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHH
Confidence            344433333333344556666677777665 344433355555555555555544444444333111 111111111111


Q ss_pred             HHHHHHHHh--cc--h----hHHHHHHHHHHHHhhhhhhhHHHHHHHhhCCCchhhHH
Q 017795          216 AFALLYYAI--GW--P----GEIYVTTVLVGLSYGAHWAIVPAAASELFGLKSFGALY  265 (366)
Q Consensus       216 ~~~~~l~~~--~~--~----~~l~~~~~l~G~~~g~~~~~~~~~~se~f~~~~~g~~~  265 (366)
                      .+..+.++.  ..  .    ...++..++.+++.|.....+++..++ +|.+.-...+
T Consensus        98 ~i~~l~~~~v~~~~~~~~ff~vt~~~vv~~~~a~a~~qgs~~G~a~~-~P~~ytqavm  154 (406)
T KOG1479|consen   98 FIVTLDLALVKTDTWTNGFFLVTLIIVVLLNLANAVVQGSLYGLAGL-FPSEYTQAVM  154 (406)
T ss_pred             HHHHHHHHhhccCCccchhHHHHHHHHHHHhhhhhhhccchhhhhhc-CCHHHHHHHH
Confidence            111111221  11  1    123445556666666666666665544 6666543333

>KOG3810 consensus Micronutrient transporters (folate transporter family) [Coenzyme transport and metabolism]

Probab=86.76  E-value=13  Score=36.15  Aligned_cols=91  Identities=19%  Similarity=0.212  Sum_probs=58.7

Q ss_pred             HHHHHHhhhhhhhhhhhhhhhhhccCchhHHHHHHHHHHHHHHHHHH-hcchhHHHHHHHHHHHHhhhhhhhHHHHHHHh
Q 017795          177 MISIWNFLGRVGGGYFSEAIVRKFAYPRPVAMAVAQVVMAFALLYYA-IGWPGEIYVTTVLVGLSYGAHWAIVPAAASEL  255 (366)
Q Consensus       177 l~~i~~~~g~~~~G~lsD~~grr~~~~R~~~~~~~~~~~~~~~~l~~-~~~~~~l~~~~~l~G~~~g~~~~~~~~~~se~  255 (366)
                      +..+.++++.+..|++.-.+.|.    +...+.++.+..+...+++. ..+.+..|++-+++...+....++....++..
T Consensus       279 v~tlLGa~~~~~~g~l~i~w~r~----g~~ll~~~s~~~agllf~m~~t~~Iw~~Ya~yvlfr~~y~l~itiA~~~iA~n  354 (433)
T KOG3810|consen  279 VSTLLGAIAALAAGYLNINWNRW----GDLLLAVGSAVQAGLLFIMAQTQHIWVCYAGYVLFRVIYQLTITIATFQIARN  354 (433)
T ss_pred             HHHHHHHHHHHHHHheeeccchh----hHHHHHHHHHHhhhhhhhhhcccceehhhhhHHHHHhhHhhhhhHHHHHHHHh
Confidence            33445566677778875554442    23344555444443334444 44556778888888888877777777778888


Q ss_pred             hCCCchhhHHHHHHhH
Q 017795          256 FGLKSFGALYNFLTLA  271 (366)
Q Consensus       256 f~~~~~g~~~g~~~~~  271 (366)
                      ...+.+|..+|+-...
T Consensus       355 L~~e~~gLvFGiNTFv  370 (433)
T KOG3810|consen  355 LSSELFGLVFGINTFV  370 (433)
T ss_pred             hhhhhheeeeehHHHH
Confidence            8888889888875543

>TIGR00806 rfc RFC reduced folate carrier

Probab=85.27  E-value=16  Score=37.13  Aligned_cols=94  Identities=14%  Similarity=0.118  Sum_probs=60.2

Q ss_pred             HHHHHHHHHhhhhhhhhhhhhhhhhhccCchhHHHHHHHHHHHHHHHHHH-hcchhHHHHHHHHHHHHhhhhhhhHHHHH
Q 017795          174 YVSMISIWNFLGRVGGGYFSEAIVRKFAYPRPVAMAVAQVVMAFALLYYA-IGWPGEIYVTTVLVGLSYGAHWAIVPAAA  252 (366)
Q Consensus       174 ~~sl~~i~~~~g~~~~G~lsD~~grr~~~~R~~~~~~~~~~~~~~~~l~~-~~~~~~l~~~~~l~G~~~g~~~~~~~~~~  252 (366)
                      .-++..+.+.+..+..|++-.++.+ ..   .+.+.+..++.+..++++. ..+.+..|++-++++..+....++...-+
T Consensus       303 veA~~tllga~~a~~ag~~~~~w~~-~~---~l~l~v~s~~~~gll~~m~~t~~Iw~~Y~~yvlf~~~y~flitia~~~i  378 (511)
T TIGR00806       303 VDAASTLLGAITSFIAGFVNIRWAR-WS---KLLIAVVSAIQAGLVFWMSQSHDIWVLYVTYVLFRGIYQFLVPIATFQI  378 (511)
T ss_pred             HHHHHHHHHHHHHHHHHhhcCCchh-hH---HHHHHHHHHHHHHHhhhhhcccchHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3344445556677788887444321 11   1233333333333333333 45667788999999999988888888888


Q ss_pred             HHhhCCCchhhHHHHHHhH
Q 017795          253 SELFGLKSFGALYNFLTLA  271 (366)
Q Consensus       253 se~f~~~~~g~~~g~~~~~  271 (366)
                      +.....+.+|..+|+-+..
T Consensus       379 A~~L~~~~~aLvFGiNtfv  397 (511)
T TIGR00806       379 ASSLSKELCALVFGINTFV  397 (511)
T ss_pred             HHHhcccceEEEEecHHHH
Confidence            8888888899999886654

Proteins of the RFC family are so-far restricted to animals. RFC proteins possess 12 putative transmembrane a-helical spanners (TMSs) and evidence for a 12 TMS topology has been published for the human RFC. The RFC transporters appear to transport reduced folate by an energy-dependent, pH-dependent, Na+-independent mechanism. Folate:H+ symport, folate:OH- antiport and folate:anion antiport mechanisms have been proposed, but the energetic mechanism is not well defined.

>PF05631 DUF791: Protein of unknown function (DUF791); InterPro: IPR008509 This family consists of several eukaryotic proteins of unknown function

Probab=82.36  E-value=51  Score=32.09  Aligned_cols=66  Identities=12%  Similarity=0.179  Sum_probs=35.7

Q ss_pred             hhhHHHHHHHHHHHhhhhHHHHHh----cHHHHHHHhCCChhHH--HHHHHH-HHHhhhhhhhhhhhhhhhhh
Q 017795          134 MKADFLLLFFSLVLASGSGLTVID----NLGQICQSLGYADTSI--YVSMIS-IWNFLGRVGGGYFSEAIVRK  199 (366)
Q Consensus       134 ~~~~~~ll~~~~~~~~~~~~~~~~----~l~~i~~~~g~~~~~~--~~sl~~-i~~~~g~~~~G~lsD~~grr  199 (366)
                      +.++++.+++.-+++..+......    |+-.=-...|++....  ..+... ++|.+..++.|.+++...+.
T Consensus       117 ~~~~~~~L~~GRvlgGiaTSLLfS~FEsW~V~Eh~~~g~~~~~L~~tF~~~tf~~n~~vAI~aGv~a~~l~~~  189 (354)
T PF05631_consen  117 HSSNYPVLLLGRVLGGIATSLLFSAFESWMVHEHNKRGFPQEWLSDTFSLATFFGNGVVAIGAGVVANVLADW  189 (354)
T ss_pred             hccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHhHHHHHHHhHHHHHHHHH
Confidence            345677887776666554433322    3332223457765533  333333 55666667777777665443

>COG4262 Predicted spermidine synthase with an N-terminal membrane domain [General function prediction only]

Probab=82.24  E-value=53  Score=32.18  Aligned_cols=116  Identities=20%  Similarity=0.232  Sum_probs=55.9

Q ss_pred             HHHHHHHHHhhhhHHHHHhcHHHHHHHh-CCCh--hHHHHHHHHHHHhhhhhhhhhhhhhh-hhhccCchhHHHHHHHHH
Q 017795          139 LLLFFSLVLASGSGLTVIDNLGQICQSL-GYAD--TSIYVSMISIWNFLGRVGGGYFSEAI-VRKFAYPRPVAMAVAQVV  214 (366)
Q Consensus       139 ~ll~~~~~~~~~~~~~~~~~l~~i~~~~-g~~~--~~~~~sl~~i~~~~g~~~~G~lsD~~-grr~~~~R~~~~~~~~~~  214 (366)
                      |++.++.+....++..+-..+..+...+ |-..  .+..++.+.....+|..+.-++.|.- -.|....-...-.++-+-
T Consensus        10 alL~laVf~~aa~GlvyElal~tLatyLlG~~Ilq~S~Iia~yl~amGlGs~~sry~~dd~~~~~Fv~vElllgligg~S   89 (508)
T COG4262          10 ALLLLAVFVCAACGLVYELALGTLATYLLGGGILQTSLIIAGYLAAMGLGSLLSRYVLDDAALARFVDVELLLGLIGGVS   89 (508)
T ss_pred             HHHHHHHHHHHHhHHHHHHHHHHHHHHhcCCceeehHHHHHHHHHHhchhhhhhccccCchHHHHHHHHHHHHHHhccch
Confidence            4455555555566666666666666664 3222  12244444444445555444433321 111110000011111111


Q ss_pred             HHHHHHHHHhc---chhHHHHHHHHHHHHhhhhhhhHHHHHHH
Q 017795          215 MAFALLYYAIG---WPGEIYVTTVLVGLSYGAHWAIVPAAASE  254 (366)
Q Consensus       215 ~~~~~~l~~~~---~~~~l~~~~~l~G~~~g~~~~~~~~~~se  254 (366)
                      .++.++.++..   ....++...+++|.-.|+-.++...+...
T Consensus        90 a~~ly~~FA~~~~~~~~Vly~lt~vIG~LVG~EiPL~mrml~~  132 (508)
T COG4262          90 AAALYLLFALESAPSRLVLYALTAVIGVLVGAEIPLLMRMLQR  132 (508)
T ss_pred             HHHHHHHHHhccchHHHHHHHHHHHHHHHHhcchHHHHHHHHH
Confidence            12222234422   23467788888998888888887776655

>PF11947 DUF3464: Protein of unknown function (DUF3464); InterPro: IPR021855 This family of proteins are functionally uncharacterised

Probab=81.00  E-value=5  Score=34.07  Aligned_cols=33  Identities=15%  Similarity=0.161  Sum_probs=26.3

Q ss_pred             hhhHHHHHHHhhCCCchhhHHHHHHhHhhhhHH
Q 017795          245 WAIVPAAASELFGLKSFGALYNFLTLASPAGSL  277 (366)
Q Consensus       245 ~~~~~~~~se~f~~~~~g~~~g~~~~~~~~G~~  277 (366)
                      ..+.|.++|.-+.++.-|..+|+-..-.+++-+
T Consensus       112 lGisYGilSaSWD~~r~GSllG~~e~~~N~~r~  144 (153)
T PF11947_consen  112 LGISYGILSASWDPEREGSLLGWEEFKRNWGRM  144 (153)
T ss_pred             HhhhhhhcccccCCCCCCCcccHHHHHHhHHHH
Confidence            466778888889899899999988877776655

This protein is found in bacteria and eukaryotes. Proteins in this family are typically between 137 to 196 amino acids in length.

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

No hit with e-value below 0.005

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	366
1pw4_A	451	Glycerol-3-phosphate transporter; transmembrane, i	99.67
4aps_A	491	DI-OR tripeptide H+ symporter; transport protein,	99.61
1pw4_A	451	Glycerol-3-phosphate transporter; transmembrane, i	99.57
3o7q_A	438	L-fucose-proton symporter; transporter, multi-PASS	99.56
2gfp_A	375	EMRD, multidrug resistance protein D; membrane pro	99.56
3o7q_A	438	L-fucose-proton symporter; transporter, multi-PASS	99.53
2xut_A	524	Proton/peptide symporter family protein; transport	99.48
2cfq_A	417	Lactose permease; transport, transport mechanism,	99.45
4gc0_A	491	D-xylose-proton symporter; MFS, transport protein;	99.31
4aps_A	491	DI-OR tripeptide H+ symporter; transport protein,	99.24
4gc0_A	491	D-xylose-proton symporter; MFS, transport protein;	99.21
2gfp_A	375	EMRD, multidrug resistance protein D; membrane pro	99.14
2cfq_A	417	Lactose permease; transport, transport mechanism,	99.01
2xut_A	524	Proton/peptide symporter family protein; transport	98.61

>1pw4_A Glycerol-3-phosphate transporter; transmembrane, inner membrane, major facilitator superfamily, secondary active membrane transporter; 3.30A {Escherichia coli} SCOP: f.38.1.1

Probab=99.67  E-value=4.7e-15  Score=144.74  Aligned_cols=185  Identities=16%  Similarity=0.164  Sum_probs=147.0

Q ss_pred             HHHHhhhhHHHHHHHHHHHhhhhHHHHHhcHHHHHHH-hCCChhHH--HHHHHHHHHhhhhhhhhhhhhhh--hhhccCc
Q 017795          129 LPQALMKADFLLLFFSLVLASGSGLTVIDNLGQICQS-LGYADTSI--YVSMISIWNFLGRVGGGYFSEAI--VRKFAYP  203 (366)
Q Consensus       129 ~~~~l~~~~~~ll~~~~~~~~~~~~~~~~~l~~i~~~-~g~~~~~~--~~sl~~i~~~~g~~~~G~lsD~~--grr~~~~  203 (366)
                      .++.++++.+|.+.+..++.......+..++|.+.++ +|++....  ..++..++..++++++|+++||+  +||+.. 
T Consensus       245 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~~~~~~~~~~~~-  323 (451)
T 1pw4_A          245 MQYVLPNKLLWYIAIANVFVYLLRYGILDWSPTYLKEVKHFALDKSSWAYFLYEYAGIPGTLLCGWMSDKVFRGNRGAT-  323 (451)
T ss_dssp             HHHTSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHBTTBSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSTTCHHHH-
T ss_pred             HHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchhH-
Confidence            4567788999998888888877777788899999887 79987765  78888899999999999999999  775433 


Q ss_pred             hhHHHHHHHHHHH-HHHHHHHhc---chhHHHHHHHHHHHHhhhhhhhHHHHHHHhhCCCchhhHHHHHHhHhhh-hHHH
Q 017795          204 RPVAMAVAQVVMA-FALLYYAIG---WPGEIYVTTVLVGLSYGAHWAIVPAAASELFGLKSFGALYNFLTLASPA-GSLI  278 (366)
Q Consensus       204 R~~~~~~~~~~~~-~~~~l~~~~---~~~~l~~~~~l~G~~~g~~~~~~~~~~se~f~~~~~g~~~g~~~~~~~~-G~~i  278 (366)
                           ..+.++.. ++++++...   +...+.+..++.|++.+..++...+++.|.+|++++|+++|+.+....+ |..+
T Consensus       324 -----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~g~~~  398 (451)
T 1pw4_A          324 -----GVFFMTLVTIATIVYWMNPAGNPTVDMICMIVIGFLIYGPVMLIGLHALELAPKKAAGTAAGFTGLFGYLGGSVA  398 (451)
T ss_dssp             -----HHHHHHHHHHHHHHTTSCCTTCHHHHHHHHHHHHHHHTHHHHHHHHHHHHTSCTTHHHHHHHHHHHHHHHHHHHH
T ss_pred             -----HHHHHHHHHHHHHHHHHhcccCHHHHHHHHHHHHHHHhchHHHHHHHHHHHhchhhhhhHHHHHHHHHHHHHHHH
Confidence                 33333333 455544432   3445666777888888888888889999999999999999999999999 9996


Q ss_pred             hhhhHHHHHhhhhhhhhhhhhhhccCCCCCcccCCCCCCcccCCcchHHHHHHHHHHHHHHHHHHHHHHhhcHH
Q 017795          279 FSGVIASGIYDYYAEKQAGLLWKYNGNMLPVSFRDQETPTCLGSICYSITCGIMAGLCIIAMVMSLIVVHRTKS  352 (366)
Q Consensus       279 ~gp~i~G~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~g~~~~~~~f~i~~~~~~~~~~~~~~~~~~~r~  352 (366)
                       +|.+.|++.|..+                                |+..|++.+++++++.++.+++.++.++
T Consensus       399 -~~~~~g~l~~~~g--------------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~  439 (451)
T 1pw4_A          399 -ASAIVGYTVDFFG--------------------------------WDGGFMVMIGGSILAVILLIVVMIGEKR  439 (451)
T ss_dssp             -HHHHHHHHHHSSC--------------------------------SHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             -HHHHHHHHHHhcC--------------------------------cHHHHHHHHHHHHHHHHHHHHHHhhhhh
Confidence             9999999999877                                9999999998888887776665544333

>4aps_A DI-OR tripeptide H+ symporter; transport protein, peptide transport, major facilitator SUPE transporter, MFS; 3.30A {Streptococcus thermophilus}

Probab=99.61  E-value=2.5e-14  Score=141.75  Aligned_cols=173  Identities=13%  Similarity=0.124  Sum_probs=141.9

Q ss_pred             HHHHHHHHHHHhhhhHHHHHhcHHHHHHH------hCCChhHH--HHHHHHHHHhhhhhhhhhhhhh-hhhhccCchhHH
Q 017795          137 DFLLLFFSLVLASGSGLTVIDNLGQICQS------LGYADTSI--YVSMISIWNFLGRVGGGYFSEA-IVRKFAYPRPVA  207 (366)
Q Consensus       137 ~~~ll~~~~~~~~~~~~~~~~~l~~i~~~------~g~~~~~~--~~sl~~i~~~~g~~~~G~lsD~-~grr~~~~R~~~  207 (366)
                      .+|.+++..++.....+.+..+++.+.++      +|++..+.  ..+.+.++..++.+++|+++|| +|||+.+     
T Consensus        14 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~~g~r~~~-----   88 (491)
T 4aps_A           14 GLSTLFMTEMWERFSYYGMRAILLYYMWFLISTGDLHITRATAASIMAIYASMVYLSGTIGGFVADRIIGARPAV-----   88 (491)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSCCSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSCHHHHH-----
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchhhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhccccchHHH-----
Confidence            46777777766666666666777777654      78887766  8889999999999999999999 8998765     


Q ss_pred             HHHHHHHHHHHHHHHH-hcchhHHHHHHHHHHHHhhhhhhhHHHHHHHhhCCCc--hhhHHHHHHhHhhhhHHHhhhhHH
Q 017795          208 MAVAQVVMAFALLYYA-IGWPGEIYVTTVLVGLSYGAHWAIVPAAASELFGLKS--FGALYNFLTLASPAGSLIFSGVIA  284 (366)
Q Consensus       208 ~~~~~~~~~~~~~l~~-~~~~~~l~~~~~l~G~~~g~~~~~~~~~~se~f~~~~--~g~~~g~~~~~~~~G~~i~gp~i~  284 (366)
                       ..+.++.+++.++++ ..+...++++.++.|++.+...+...++++|.++.++  ++.++++.+....+|..+ ||.++
T Consensus        89 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~-~~~~~  166 (491)
T 4aps_A           89 -FWGGVLIMLGHIVLALPFGASALFGSIILIIIGTGFLKPNVSTLVGTLYDEHDRRRDAGFSIFVFGINLGAFI-APLIV  166 (491)
T ss_dssp             -HHHHHHHHHHHHHHHSCCSTTHHHHHHHHHHHHHHHHHHHHHHHHHHHSSSCTTHHHHHHHHHHHHHHHHHHH-HHHHH
T ss_pred             -HHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHhccchHHHHHHHHcCcccccceeeehHHHHHHHHHHHH-HHHHH
Confidence             677777777777766 4466778889999999999999999999999999988  888899899999999996 99999


Q ss_pred             HHHhhhhhhhhhhhhhhccCCCCCcccCCCCCCcccCCcchHHHHHHHHHHHHHHHHHHHHHHh
Q 017795          285 SGIYDYYAEKQAGLLWKYNGNMLPVSFRDQETPTCLGSICYSITCGIMAGLCIIAMVMSLIVVH  348 (366)
Q Consensus       285 G~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~g~~~~~~~f~i~~~~~~~~~~~~~~~~~  348 (366)
                      |++.+..+                                |++.|++.++.++++.++.++..+
T Consensus       167 ~~l~~~~g--------------------------------~~~~f~~~~~~~~~~~~~~~~~~~  198 (491)
T 4aps_A          167 GAAQEAAG--------------------------------YHVAFSLAAIGMFIGLLVYYFGGK  198 (491)
T ss_dssp             HHHHHHSC--------------------------------HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHhhhh--------------------------------HHHHHHHHHHHHHHHHHHHHHhCc
Confidence            99998776                                999999988877776666554433

>1pw4_A Glycerol-3-phosphate transporter; transmembrane, inner membrane, major facilitator superfamily, secondary active membrane transporter; 3.30A {Escherichia coli} SCOP: f.38.1.1

Probab=99.57  E-value=1.3e-14  Score=141.62  Aligned_cols=175  Identities=14%  Similarity=0.136  Sum_probs=140.6

Q ss_pred             hHHHHHHHHHHHhhhhHHHHHhcHHHHHHHhCCChhHH--HHHHHHHHHhhhhhhhhhhhhhhhhhccCchhHHHHHHHH
Q 017795          136 ADFLLLFFSLVLASGSGLTVIDNLGQICQSLGYADTSI--YVSMISIWNFLGRVGGGYFSEAIVRKFAYPRPVAMAVAQV  213 (366)
Q Consensus       136 ~~~~ll~~~~~~~~~~~~~~~~~l~~i~~~~g~~~~~~--~~sl~~i~~~~g~~~~G~lsD~~grr~~~~R~~~~~~~~~  213 (366)
                      +.++.+++..++.......+...+|.+.+++ .+..+.  ..++..++..++.+++|+++||+|||+.+      .++.+
T Consensus        28 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~s~~~~g~~~~~~~~~~~~~~~~~G~l~dr~g~r~~l------~~~~~  100 (451)
T 1pw4_A           28 QIFLGIFFGYAAYYLVRKNFALAMPYLVEQG-FSRGDLGFALSGISIAYGFSKFIMGSVSDRSNPRVFL------PAGLI  100 (451)
T ss_dssp             HHHHHHHHHHHHHHHHHTSHHHHHHHTTSST-TCSSCHHHHHHHHHHHHHHHHHHHHHHHHHSCHHHHH------HHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-ccHhHHHHHHHHHHHHHHHHHHhHHHHHHhcCchHHH------HHHHH
Confidence            3455555666655555555667788888888 776655  78889999999999999999999998654      66777


Q ss_pred             HHHHHHHHHHh-----cchhHHHHHHHHHHHHhhhhhhhHHHHHHHhhCCCchhhHHHHHHhHhhhhHHHhhhhHHHHHh
Q 017795          214 VMAFALLYYAI-----GWPGEIYVTTVLVGLSYGAHWAIVPAAASELFGLKSFGALYNFLTLASPAGSLIFSGVIASGIY  288 (366)
Q Consensus       214 ~~~~~~~l~~~-----~~~~~l~~~~~l~G~~~g~~~~~~~~~~se~f~~~~~g~~~g~~~~~~~~G~~i~gp~i~G~l~  288 (366)
                      +.+++.++++.     .+...++++.++.|++.+..++...++++|.++.++|+.++++.+....+|..+ ||.++|++.
T Consensus       101 ~~~~~~~~~~~~~~~~~~~~~l~~~~~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~-g~~~~~~l~  179 (451)
T 1pw4_A          101 LAAAVMLFMGFVPWATSSIAVMFVLLFLCGWFQGMGWPPCGRTMVHWWSQKERGGIVSVWNCAHNVGGGI-PPLLFLLGM  179 (451)
T ss_dssp             HHHHHHHHHHHCHHHHSSSSHHHHHHHHHHHHHHHTHHHHHHHHHTTCTTTHHHHHHHHHHHHHHHHHTS-HHHHHHHHH
T ss_pred             HHHHHHHHHHhhhhccccHHHHHHHHHHHHHHhhhccchHHHHHHHHCCchhhhHHHHHHHHHHHHHHHH-HHHHHHHHH
Confidence            77777666544     355678889999999999999999999999999999999999999999999996 999999988


Q ss_pred             hhhhhhhhhhhhhccCCCCCcccCCCCCCcccCCcchHHHHHHHHHHHHHHHHHHHHHHhh
Q 017795          289 DYYAEKQAGLLWKYNGNMLPVSFRDQETPTCLGSICYSITCGIMAGLCIIAMVMSLIVVHR  349 (366)
Q Consensus       289 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~g~~~~~~~f~i~~~~~~~~~~~~~~~~~~  349 (366)
                      +..+                               +|++.|++.++++++..++.+++.++
T Consensus       180 ~~~g-------------------------------~w~~~f~~~~~~~~~~~~~~~~~~~~  209 (451)
T 1pw4_A          180 AWFN-------------------------------DWHAALYMPAFCAILVALFAFAMMRD  209 (451)
T ss_dssp             HHTC-------------------------------CSTTCTHHHHHHHHHHHHHHHHHCCC
T ss_pred             HHhc-------------------------------cHHHHHHHHHHHHHHHHHHHHhhccC
Confidence            6554                               29999999998887777666555444

>3o7q_A L-fucose-proton symporter; transporter, multi-PASS membrane protei transport protein; HET: BNG; 3.14A {Escherichia coli} PDB: 3o7p_A*

Probab=99.56  E-value=9e-14  Score=135.27  Aligned_cols=144  Identities=15%  Similarity=0.049  Sum_probs=119.8

Q ss_pred             HHHHHHHHHHhhhhHHHHHhcHHHHHHHhCCChhHH--HHHHHHHHHhhhhhhhhhhhhhhhhhccCchhHHHHHHHHHH
Q 017795          138 FLLLFFSLVLASGSGLTVIDNLGQICQSLGYADTSI--YVSMISIWNFLGRVGGGYFSEAIVRKFAYPRPVAMAVAQVVM  215 (366)
Q Consensus       138 ~~ll~~~~~~~~~~~~~~~~~l~~i~~~~g~~~~~~--~~sl~~i~~~~g~~~~G~lsD~~grr~~~~R~~~~~~~~~~~  215 (366)
                      ++.+.+.+++...........+|.+.+++|.+..+.  ..+...++..++.+++|+++||+|||+.+      ..+.++.
T Consensus        28 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~i~~~~~G~l~dr~g~r~~l------~~~~~~~  101 (438)
T 3o7q_A           28 FALLCSLFFLWAVANNLNDILLPQFQQAFTLTNFQAGLIQSAFYFGYFIIPIPAGILMKKLSYKAGI------ITGLFLY  101 (438)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHSCCCSHHHHHHHHHHHHHHHTTHHHHHHHHHHSCHHHHH------HHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHhHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHhHHHHHHHhcchHHH------HHHHHHH
Confidence            344444555554444566667889999999988776  88899999999999999999999998765      6677777


Q ss_pred             HHHHHHH---H-hcchhHHHHHHHHHHHHhhhhhhhHHHHHHHhhCCCchhhHHHHHHhHhhhhHHHhhhhHHHHHh
Q 017795          216 AFALLYY---A-IGWPGEIYVTTVLVGLSYGAHWAIVPAAASELFGLKSFGALYNFLTLASPAGSLIFSGVIASGIY  288 (366)
Q Consensus       216 ~~~~~l~---~-~~~~~~l~~~~~l~G~~~g~~~~~~~~~~se~f~~~~~g~~~g~~~~~~~~G~~i~gp~i~G~l~  288 (366)
                      +++.++.   . ..+...++++.++.|++.+...+...++++|.+++++|+.+.++.+....+|..+ +|.+++.+.
T Consensus       102 ~~~~~~~~~~~~~~~~~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~-g~~~~~~l~  177 (438)
T 3o7q_A          102 ALGAALFWPAAEIMNYTLFLVGLFIIAAGLGCLETAANPFVTVLGPESSGHFRLNLAQTFNSFGAII-AVVFGQSLI  177 (438)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCSTTHHHHHHHHHHHHHHHHHH-HHHHTTHHH
T ss_pred             HHHHHHHHhccccccHHHHHHHHHHHHhhHHHhhhhHHHHHHHHcCchhHHHHHHHHHHHHHHHHHH-HHHHHHHHH
Confidence            7776665   4 3566778899999999999999999999999999999999999999999999996 999999988

>2gfp_A EMRD, multidrug resistance protein D; membrane protein, multidrug transporter; 3.50A {Escherichia coli}

Probab=99.56  E-value=2.3e-14  Score=136.98  Aligned_cols=171  Identities=10%  Similarity=0.128  Sum_probs=139.2

Q ss_pred             HHHHHHHHhhhhHHHHHhcHHHHHHHhCCChhHH--HHHHHHHHHhhhhhhhhhhhhhhhhhccCchhHHHHHHHHHHHH
Q 017795          140 LLFFSLVLASGSGLTVIDNLGQICQSLGYADTSI--YVSMISIWNFLGRVGGGYFSEAIVRKFAYPRPVAMAVAQVVMAF  217 (366)
Q Consensus       140 ll~~~~~~~~~~~~~~~~~l~~i~~~~g~~~~~~--~~sl~~i~~~~g~~~~G~lsD~~grr~~~~R~~~~~~~~~~~~~  217 (366)
                      ++.+..++.......+...+|.+.+++|.+..+.  ..+...++..++.+.+|+++||+|||+..      ..+.++.++
T Consensus         4 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~------~~~~~~~~~   77 (375)
T 2gfp_A            4 MLVLLVAVGQMAQTIYIPAIADMARDLNVREGAVQSVMGAYLLTYGVSQLFYGPISDRVGRRPVI------LVGMSIFML   77 (375)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHTTSSSTTHHHHHHHHHHHHHHHHHHTTHHHHHTTSCCCCCC------HHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHhhhhHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchhH------HHHHHHHHH
Confidence            3444555555555566677888999999988766  78889999999999999999999999887      667677777


Q ss_pred             HHHHHH-hcchhHHHHHHHHHHHHhhhhhhhHHHHHHHhhCCCchhhHHHHHHhHhhhhHHHhhhhHHHHHhhhhhhhhh
Q 017795          218 ALLYYA-IGWPGEIYVTTVLVGLSYGAHWAIVPAAASELFGLKSFGALYNFLTLASPAGSLIFSGVIASGIYDYYAEKQA  296 (366)
Q Consensus       218 ~~~l~~-~~~~~~l~~~~~l~G~~~g~~~~~~~~~~se~f~~~~~g~~~g~~~~~~~~G~~i~gp~i~G~l~d~~~~~~~  296 (366)
                      +.++.. ..+...+++..++.|++.+...+...++++|.+++++++.++++.+....+|..+ +|.++|++.+..+    
T Consensus        78 ~~~~~~~~~~~~~l~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~-~~~~~~~l~~~~~----  152 (375)
T 2gfp_A           78 ATLVAVTTSSLTVLIAASAMQGMGTGVGGVMARTLPRDLYERTQLRHANSLLNMGILVSPLL-APLIGGLLDTMWN----  152 (375)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSSCCSHHHHHHHHHHHHHHH-HHHHHHHSSCHHH----
T ss_pred             HHHHHHHhccHHHHHHHHHHHHHHHHhhhhhHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHh-hHHHHHHHHHhcc----
Confidence            666655 4455677888999999999999999999999999999999999999999999996 9999999998777    


Q ss_pred             hhhhhccCCCCCcccCCCCCCcccCCcchHHHHHHHHHHHHHHHHHHHHHHhh
Q 017795          297 GLLWKYNGNMLPVSFRDQETPTCLGSICYSITCGIMAGLCIIAMVMSLIVVHR  349 (366)
Q Consensus       297 ~~~~~~~~~~~~~~~~~~~~~~c~g~~~~~~~f~i~~~~~~~~~~~~~~~~~~  349 (366)
                                                  |++.|++.+++.++..+...+..++
T Consensus       153 ----------------------------~~~~~~~~~~~~~~~~~~~~~~~~~  177 (375)
T 2gfp_A          153 ----------------------------WRACYLFLLVLCAGVTFSMARWMPE  177 (375)
T ss_dssp             ----------------------------HHHHHHHHHHHHHHHHCCCCCSSCC
T ss_pred             ----------------------------HHHHHHHHHHHHHHHHHHHHHHCcc
Confidence                                        9999998887776665544333333

>3o7q_A L-fucose-proton symporter; transporter, multi-PASS membrane protei transport protein; HET: BNG; 3.14A {Escherichia coli} PDB: 3o7p_A*

Probab=99.53  E-value=2.5e-13  Score=132.14  Aligned_cols=155  Identities=12%  Similarity=0.084  Sum_probs=121.8

Q ss_pred             HHHHhhhhHHHHHHHHHHHhhhhHHHHHhcHHHH-HHHh-CCChhHH--HHHHHHHHHhhhhhhhhhhhhhhhhhccCch
Q 017795          129 LPQALMKADFLLLFFSLVLASGSGLTVIDNLGQI-CQSL-GYADTSI--YVSMISIWNFLGRVGGGYFSEAIVRKFAYPR  204 (366)
Q Consensus       129 ~~~~l~~~~~~ll~~~~~~~~~~~~~~~~~l~~i-~~~~-g~~~~~~--~~sl~~i~~~~g~~~~G~lsD~~grr~~~~R  204 (366)
                      +++.++++.+|...+..++.......+..++|.+ .++. |++....  ..++..++..+++++.|+++||++||+..  
T Consensus       251 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~~r~~~~~~~--  328 (438)
T 3o7q_A          251 LSRLARIRHWRWAVLAQFCYVGAQTACWSYLIRYAVEEIPGMTAGFAANYLTGTMVCFFIGRFTGTWLISRFAPHKVL--  328 (438)
T ss_dssp             HHHHTTCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCHHHHH--
T ss_pred             HHHHHhChHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHH--
Confidence            4566778889988888888777777888899998 8775 9887765  77778889999999999999999887544  


Q ss_pred             hHHHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHhhhhhhhHHHHHHHhhCCCchhhHHHHHHhHhhhhHHHhhhhHH
Q 017795          205 PVAMAVAQVVMAFALLYYAIGWPGEIYVTTVLVGLSYGAHWAIVPAAASELFGLKSFGALYNFLTLASPAGSLIFSGVIA  284 (366)
Q Consensus       205 ~~~~~~~~~~~~~~~~l~~~~~~~~l~~~~~l~G~~~g~~~~~~~~~~se~f~~~~~g~~~g~~~~~~~~G~~i~gp~i~  284 (366)
                          ..+.++.+++.+++.........+..++.|++.+..++...++..|.++++ ++.+.++.. ...+|+.+ +|.+.
T Consensus       329 ----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~-~~~~g~~~-~~~~~  401 (438)
T 3o7q_A          329 ----AAYALIAMALCLISAFAGGHVGLIALTLCSAFMSIQYPTIFSLGIKNLGQD-TKYGSSFIV-MTIIGGGI-VTPVM  401 (438)
T ss_dssp             ----HHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHTTHHHHHHHHHHSSCGGG-HHHHHHHHH-HTTHHHHH-HHHHH
T ss_pred             ----HHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHHHHHHHHHHhhcccc-ccchhhHHH-HHHHHHHH-HHHHH
Confidence                555566666655555444444455567888999988999999989999866 788888776 55688886 99999


Q ss_pred             HHHhhhhh
Q 017795          285 SGIYDYYA  292 (366)
Q Consensus       285 G~l~d~~~  292 (366)
                      |++.|..+
T Consensus       402 g~l~~~~g  409 (438)
T 3o7q_A          402 GFVSDAAG  409 (438)
T ss_dssp             HHHHHHHT
T ss_pred             HHHHHHhc
Confidence            99999876

>2xut_A Proton/peptide symporter family protein; transport protein, membrane protein, major facilitator super transporter; 3.62A {Shewanella oneidensis}

Probab=99.48  E-value=3.5e-13  Score=134.72  Aligned_cols=170  Identities=12%  Similarity=0.103  Sum_probs=134.1

Q ss_pred             hHHHHHHHHHHHhhhhHHHHHhcHHHHH-HHhC------CChhHH--HHHHHHHHHhhhhhhhhhhhhhh-hhhccCchh
Q 017795          136 ADFLLLFFSLVLASGSGLTVIDNLGQIC-QSLG------YADTSI--YVSMISIWNFLGRVGGGYFSEAI-VRKFAYPRP  205 (366)
Q Consensus       136 ~~~~ll~~~~~~~~~~~~~~~~~l~~i~-~~~g------~~~~~~--~~sl~~i~~~~g~~~~G~lsD~~-grr~~~~R~  205 (366)
                      +.+|.+++..++.....+....+++.+. +++|      ++....  ..+++.++..++.+++|+++||+ |||+.+   
T Consensus        12 ~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~s~~~~g~~~~~~~~~~~~~~~~~G~l~dr~~g~r~~~---   88 (524)
T 2xut_A           12 RQIPYIIASEACERFSFYGMRNILTPFLMTALLLSIPEELRGAVAKDVFHSFVIGVYFFPLLGGWIADRFFGKYNTI---   88 (524)
T ss_dssp             -CCTHHHHHHHHHHHHHHHHHHHHHHHHHHSCSSCCSSSTTTTTHHHHHHHHHHHHHHTHHHHHHHHTTSSCSHHHH---
T ss_pred             cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHH---
Confidence            3456666666666666666667777765 5578      877665  78888999999999999999999 987655   


Q ss_pred             HHHHHHHHHHHHHHHHHH-hc-chhHHHHHHHHHHHHhhhhhhhHHHHHHHhhCCCchhhHHHH---HHhHhhhhHHHhh
Q 017795          206 VAMAVAQVVMAFALLYYA-IG-WPGEIYVTTVLVGLSYGAHWAIVPAAASELFGLKSFGALYNF---LTLASPAGSLIFS  280 (366)
Q Consensus       206 ~~~~~~~~~~~~~~~l~~-~~-~~~~l~~~~~l~G~~~g~~~~~~~~~~se~f~~~~~g~~~g~---~~~~~~~G~~i~g  280 (366)
                         .++.++.+++.+++. .. +...++++.++.|++.+...+...++++|.+++++++...+.   .+....+|..+ |
T Consensus        89 ---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~g~~~-g  164 (524)
T 2xut_A           89 ---LWLSLIYCVGHAFLAIFEHSVQGFYTGLFLIALGSGGIKPLVSSFMGDQFDQSNKSLAQKAFDMFYFTINFGSFF-A  164 (524)
T ss_dssp             ---HHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHHHHHTTHHHHHHHHHHTCSTTTTTHHHHHHHHHHHHHHHHHHH-H
T ss_pred             ---HHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHhccccchhHHHHHHHHcCccchHHHHHHHHHHHHHHHHHHHH-H
Confidence               566667777766665 34 566788889999999999999999999999999998765555   88899999996 9


Q ss_pred             hhHHHHHhhhhhhhhhhhhhhccCCCCCcccCCCCCCcccCCcchHHHHHHHHHHHHHHHHHHH
Q 017795          281 GVIASGIYDYYAEKQAGLLWKYNGNMLPVSFRDQETPTCLGSICYSITCGIMAGLCIIAMVMSL  344 (366)
Q Consensus       281 p~i~G~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~g~~~~~~~f~i~~~~~~~~~~~~~  344 (366)
                      |.++|++.+..+                                |++.|++.+++.+++.++.+
T Consensus       165 ~~~~~~l~~~~g--------------------------------~~~~f~~~~~~~~~~~~~~~  196 (524)
T 2xut_A          165 SLSMPLLLKNFG--------------------------------AAVAFGIPGVLMFVATVFFW  196 (524)
T ss_dssp             HHTSTHHHHTSC--------------------------------HHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHhcccc--------------------------------HHHHHHHHHHHHHHHHHHHH
Confidence            999999988766                                99999998887766555443

>2cfq_A Lactose permease; transport, transport mechanism, lactose/H+ symport, sugar transport, transmembrane, formylation; 2.95A {Escherichia coli} SCOP: f.38.1.2 PDB: 1pv7_A* 1pv6_A 2cfp_A 2v8n_A 2y5y_A*

Probab=99.45  E-value=6.9e-13  Score=129.46  Aligned_cols=182  Identities=10%  Similarity=0.048  Sum_probs=128.0

Q ss_pred             HHHHhhhhHHHHHHHHHHHhhhhHHHHHhcHHHHHHHh-CCC---hhHH--HHHHHHHHHhhhhhhhhhhhhhhhhhccC
Q 017795          129 LPQALMKADFLLLFFSLVLASGSGLTVIDNLGQICQSL-GYA---DTSI--YVSMISIWNFLGRVGGGYFSEAIVRKFAY  202 (366)
Q Consensus       129 ~~~~l~~~~~~ll~~~~~~~~~~~~~~~~~l~~i~~~~-g~~---~~~~--~~sl~~i~~~~g~~~~G~lsD~~grr~~~  202 (366)
                      +++.++++++|.+.+..++.......+..++|.+.++. +..   ....  ..++..++..++.++.|+++||++||+..
T Consensus       213 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~~~~l  292 (417)
T 2cfq_A          213 ALELFRQPKLWFLSLYVIGVSCTYDVFDQQFANFFTSFFATGEQGTRVFGYVTTMGELLNASIMFFAPLIINRIGGKNAL  292 (417)
T ss_dssp             HHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSSSHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHH
T ss_pred             HHHHhcCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHhcHHHHH
Confidence            34677888888766554444433344555677776553 321   1111  45566677888999999999999987644


Q ss_pred             chhHHHHHHHHHHHHHHHHHHh-cchhHHHHHHHHHHHHhhhhhhhHHHHHHHhhCCCchhhHHHHH-HhHhhhhHHHhh
Q 017795          203 PRPVAMAVAQVVMAFALLYYAI-GWPGEIYVTTVLVGLSYGAHWAIVPAAASELFGLKSFGALYNFL-TLASPAGSLIFS  280 (366)
Q Consensus       203 ~R~~~~~~~~~~~~~~~~l~~~-~~~~~l~~~~~l~G~~~g~~~~~~~~~~se~f~~~~~g~~~g~~-~~~~~~G~~i~g  280 (366)
                            ..+.++++++.+++.. .+...+++..++.+++.+...+....+++|.+|++.+|+++++. +....+|+.+ +
T Consensus       293 ------~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~lg~~~-g  365 (417)
T 2cfq_A          293 ------LLAGTIMSVRIIGSSFATSALEVVILKTLHMFEVPFLLVGCFKYITSQFEVRFSATIYLVCFCFFKQLAMIF-M  365 (417)
T ss_dssp             ------HHHHHHHHHHHHHHTTCCSHHHHHHHTTHHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHTTTHHHHHHH-H
T ss_pred             ------HHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHhHHHHH-h
Confidence                  4555555555555543 33444555556667776666666778999999999999999994 8888899996 9


Q ss_pred             hhHHHHHhhhhhhhhhhhhhhccCCCCCcccCCCCCCcccCCcchHHHHHHHHHHHHHHHHHHHHHHhh
Q 017795          281 GVIASGIYDYYAEKQAGLLWKYNGNMLPVSFRDQETPTCLGSICYSITCGIMAGLCIIAMVMSLIVVHR  349 (366)
Q Consensus       281 p~i~G~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~g~~~~~~~f~i~~~~~~~~~~~~~~~~~~  349 (366)
                      |.++|+++|..+                                |...|.+.++++++++++.+.+.++
T Consensus       366 p~l~G~l~~~~g--------------------------------~~~~f~~~~~~~l~~~~~~~~~~~~  402 (417)
T 2cfq_A          366 SVLAGNMYESIG--------------------------------FQGAYLVLGLVALGFTLISVFTLSG  402 (417)
T ss_dssp             THHHHTHHHHSH--------------------------------HHHHHHHHHHHHHHHHHHHTTSSCC
T ss_pred             hhhHHHHHHhcC--------------------------------cHHHHHHHHHHHHHHHHHHHhhhcC
Confidence            999999999776                                8889999888888877665544433

>4gc0_A D-xylose-proton symporter; MFS, transport protein; HET: 6BG BNG; 2.60A {Escherichia coli} PDB: 4gbz_A* 4gby_A*

Probab=99.31  E-value=1.8e-11  Score=120.99  Aligned_cols=173  Identities=12%  Similarity=0.006  Sum_probs=116.4

Q ss_pred             hhhHHHHHhcHHHHHHHhCCChhHH--HHHHHHHHHhhhhhhhhhhhhhhhhhccCchhHHHHHHHHHHHHHHHHHH---
Q 017795          149 SGSGLTVIDNLGQICQSLGYADTSI--YVSMISIWNFLGRVGGGYFSEAIVRKFAYPRPVAMAVAQVVMAFALLYYA---  223 (366)
Q Consensus       149 ~~~~~~~~~~l~~i~~~~g~~~~~~--~~sl~~i~~~~g~~~~G~lsD~~grr~~~~R~~~~~~~~~~~~~~~~l~~---  223 (366)
                      ......+..+.+.+.+..+.+....  ...+.++...++.++.+++.||+|||+..      ..+...++++.+.+.   
T Consensus       290 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~dr~Grr~~~------~~~~~~~~~~~~~l~~~~  363 (491)
T 4gc0_A          290 FVGINVVLYYAPEVFKTLGASTDIALLQTIIVGVINLTFTVLAIMTVDKFGRKPLQ------IIGALGMAIGMFSLGTAF  363 (491)
T ss_dssp             HTCHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCSHHHH------HHHHHHHHHHHHHHHHHH
T ss_pred             HhhhhHHHhcchHHHHhcCCCccchhhHHHHHHHHHHHHHHHHHHHHHhhcCcchh------ccchHHHHHHHHHHHHHH
Confidence            3334455566777888888776554  55666788889999999999999998654      334444444333322   


Q ss_pred             -hcch-hHHHHHHHHHHHHhh-hhhhhHHHHHHHhhCCCchhhHHHHHHhHhhhhHHHhhhhHHHHHhhhhhhhhhhhhh
Q 017795          224 -IGWP-GEIYVTTVLVGLSYG-AHWAIVPAAASELFGLKSFGALYNFLTLASPAGSLIFSGVIASGIYDYYAEKQAGLLW  300 (366)
Q Consensus       224 -~~~~-~~l~~~~~l~G~~~g-~~~~~~~~~~se~f~~~~~g~~~g~~~~~~~~G~~i~gp~i~G~l~d~~~~~~~~~~~  300 (366)
                       .... ....+..++...+++ +..++.+.+.+|+||++.|+++.|+.+....+|+++ ++.+.+.+.+.......    
T Consensus       364 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~fPt~~R~~~~g~~~~~~~~~~~i-~~~~~p~l~~~~~~~~~----  438 (491)
T 4gc0_A          364 YTQAPGIVALLSMLFYVAAFAMSWGPVCWVLLSEIFPNAIRGKALAIAVAAQWLANYF-VSWTFPMMDKNSWLVAH----  438 (491)
T ss_dssp             HTTCCHHHHHHHHHHHHHHHHTTTTHHHHHHHHHSSCTTTHHHHHHHHHHHHHHHHHH-HHTHHHHHCHHHHHHHH----
T ss_pred             hcccchHHHHHHHHHHHHHHHhHHHHHHHHHHHHhCCHhHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHhh----
Confidence             1122 222233333333322 234667789999999999999999999999999996 78888777654321100    


Q ss_pred             hccCCCCCcccCCCCCCcccCCcchHHHHHHHHHHHHHHHHHHHHHHhhcHHHH
Q 017795          301 KYNGNMLPVSFRDQETPTCLGSICYSITCGIMAGLCIIAMVMSLIVVHRTKSVY  354 (366)
Q Consensus       301 ~~~~~~~~~~~~~~~~~~c~g~~~~~~~f~i~~~~~~~~~~~~~~~~~~~r~~~  354 (366)
                                            ..+...|++.+++++++++..+++.+|||.+.
T Consensus       439 ----------------------~~~~~~~~i~~~~~~~~~i~~~~~~PETkg~t  470 (491)
T 4gc0_A          439 ----------------------FHNGFSYWIYGCMGVLAALFMWKFVPETKGKT  470 (491)
T ss_dssp             ----------------------HTTCHHHHHHHHHHHHHHHHHHHHCCCCTTCC
T ss_pred             ----------------------hhhhHHHHHHHHHHHHHHHHHHheecCCCCCC
Confidence                                  01556788999999999988888888887643

>4aps_A DI-OR tripeptide H+ symporter; transport protein, peptide transport, major facilitator SUPE transporter, MFS; 3.30A {Streptococcus thermophilus}

Probab=99.24  E-value=1.5e-10  Score=114.40  Aligned_cols=180  Identities=14%  Similarity=0.061  Sum_probs=122.4

Q ss_pred             HHHHHHHHHHhhhhHHHHHhcHHHHHHH-hCCCh--hHHHHHHHHHHHhhhhhhhhhhhhhhhhhccCchhHHHHHHHHH
Q 017795          138 FLLLFFSLVLASGSGLTVIDNLGQICQS-LGYAD--TSIYVSMISIWNFLGRVGGGYFSEAIVRKFAYPRPVAMAVAQVV  214 (366)
Q Consensus       138 ~~ll~~~~~~~~~~~~~~~~~l~~i~~~-~g~~~--~~~~~sl~~i~~~~g~~~~G~lsD~~grr~~~~R~~~~~~~~~~  214 (366)
                      ++.+++..++...........++.+.++ ++.+.  .....++..++..++.++.|+++||++||+.. +...+..+.++
T Consensus       285 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~r~~~r~~~-~~~~~~~~~~~  363 (491)
T 4aps_A          285 YIPLFIAAVLFWAIEEQGSVVLATFAAERVDSSWFPVSWFQSLNPLFIMLYTPFFAWLWTAWKKNQPS-SPTKFAVGLMF  363 (491)
T ss_dssp             HHHHHHHHHHHHHHHGGGGTHHHHHHHHSCCCSSSCSGGGTTHHHHHHHHHHHHHHHHHHHTTTC----CHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHhhccHHHHHHHHHHhccCccCHHHHhccchHHHHHHHHHHHHHHHHHhccCCC-chHHHHHHHHH
Confidence            3444434333334444455667777765 45542  22366677778888899999999999998654 23334456666


Q ss_pred             HHHHHHHHHh----------cchhHHHHHHHHHHHHhhhhhhhHHHHHHHhhCCCchhhHHHHHHhHhhhhHHHhhhhHH
Q 017795          215 MAFALLYYAI----------GWPGEIYVTTVLVGLSYGAHWAIVPAAASELFGLKSFGALYNFLTLASPAGSLIFSGVIA  284 (366)
Q Consensus       215 ~~~~~~l~~~----------~~~~~l~~~~~l~G~~~g~~~~~~~~~~se~f~~~~~g~~~g~~~~~~~~G~~i~gp~i~  284 (366)
                      ++++++++..          .+...+.+..++.|++.+...+...+++.|.+|.+.+|++.|+.+....+|..+ +|.+.
T Consensus       364 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~i-~~~~~  442 (491)
T 4aps_A          364 AGLSFLLMAIPGALYGTSGKVSPLWLVGSWALVILGEMLISPVGLSVTTKLAPKAFNSQMMSMWFLSSSVGSAL-NAQLV  442 (491)
T ss_dssp             HHHHHTTTHHHHHHCCCCTTCCTHHHHHHHHHHHHHHHTTTTHHHHHHHHHTTTTCSSSSTHHHHHHHHHHHHH-HHHHG
T ss_pred             HHHHHHHHHHHHHhcCCCCCccHHHHHHHHHHHHHHHHHHhHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHH-HHHHH
Confidence            6666554432          133456677788899988888889999999999999999999999999999996 99999


Q ss_pred             HHHhhhhhhhhhhhhhhccCCCCCcccCCCCCCcccCCcchHHHHHHHHHHHHHHHHHHHHHHhhcHH
Q 017795          285 SGIYDYYAEKQAGLLWKYNGNMLPVSFRDQETPTCLGSICYSITCGIMAGLCIIAMVMSLIVVHRTKS  352 (366)
Q Consensus       285 G~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~g~~~~~~~f~i~~~~~~~~~~~~~~~~~~~r~  352 (366)
                      |++.|. +                                +.+.|++.+++++++.++.+++.++.++
T Consensus       443 ~~~~~~-~--------------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~  477 (491)
T 4aps_A          443 TLYNAK-S--------------------------------EVAYFSYFGLGSVVLGIVLVFLSKRIQG  477 (491)
T ss_dssp             GGGGGS-S--------------------------------TTHHHHHTHHHHHHHHHHHHHC------
T ss_pred             HHHhcc-c--------------------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            887753 2                                6678888888888777776666555444

>4gc0_A D-xylose-proton symporter; MFS, transport protein; HET: 6BG BNG; 2.60A {Escherichia coli} PDB: 4gbz_A* 4gby_A*

Probab=99.21  E-value=1.3e-10  Score=114.83  Aligned_cols=129  Identities=19%  Similarity=0.214  Sum_probs=101.0

Q ss_pred             HHhcHHHHHHHhCCC----hh--H----HHHHHHHHHHhhhhhhhhhhhhhhhhhccCchhHHHHHHHHHHHHHHHHHH-
Q 017795          155 VIDNLGQICQSLGYA----DT--S----IYVSMISIWNFLGRVGGGYFSEAIVRKFAYPRPVAMAVAQVVMAFALLYYA-  223 (366)
Q Consensus       155 ~~~~l~~i~~~~g~~----~~--~----~~~sl~~i~~~~g~~~~G~lsD~~grr~~~~R~~~~~~~~~~~~~~~~l~~-  223 (366)
                      +...+|.+.++++.+    ..  .    ..++.+.++..+|.+++|+++||+|||+.+      .++.+++.++.++.+ 
T Consensus        31 i~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~s~~~~G~~iG~~~~G~laDr~GRk~~l------~~~~~l~~i~~i~~a~  104 (491)
T 4gc0_A           31 ISGTVESLNTVFVAPQNLSESAANSLLGFCVASALIGCIIGGALGGYCSNRFGRRDSL------KIAAVLFFISGVGSAW  104 (491)
T ss_dssp             GGGTHHHHHHHHTGGGCCCHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHTCHHHHH------HHHHHHHHHHHHHHHC
T ss_pred             HHHHHHHHHHHhcCCCCCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHH------HHHHHHHHHHHHHHHH
Confidence            344577777666432    11  1    166778889999999999999999998766      666667766666544 


Q ss_pred             ------------------hcchhHHHHHHHHHHHHhhhhhhhHHHHHHHhhCCCchhhHHHHHHhHhhhhHHHhhhhHHH
Q 017795          224 ------------------IGWPGEIYVTTVLVGLSYGAHWAIVPAAASELFGLKSFGALYNFLTLASPAGSLIFSGVIAS  285 (366)
Q Consensus       224 ------------------~~~~~~l~~~~~l~G~~~g~~~~~~~~~~se~f~~~~~g~~~g~~~~~~~~G~~i~gp~i~G  285 (366)
                                        ..+...+++++++.|++.|+..+..+.+++|..|+++|+...++...+..+|..+ ++.+..
T Consensus       105 ~~~~~~~~~~~~~~~~~~a~~~~~l~~~R~l~G~g~G~~~~~~~~~i~E~~p~~~rg~~~~~~~~~~~~g~~~-~~~~~~  183 (491)
T 4gc0_A          105 PELGFTSINPDNTVPVYLAGYVPEFVIYRIIGGIGVGLASMLSPMYIAELAPAHIRGKLVSFNQFAIIFGQLL-VYCVNY  183 (491)
T ss_dssp             TTTTTSCSSSSSSCCGGGGGCHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCGGGHHHHHHHHHHHHHHHHHH-HHHHHH
T ss_pred             HhhhhhhhcchhHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCHHhhhhhHHhhhhhhhhhhhh-hhhcch
Confidence                              3455678999999999999999999999999999999999999999999999885 666665


Q ss_pred             HHhhh
Q 017795          286 GIYDY  290 (366)
Q Consensus       286 ~l~d~  290 (366)
                      .+...
T Consensus       184 ~~~~~  188 (491)
T 4gc0_A          184 FIARS  188 (491)
T ss_dssp             HHHTT
T ss_pred             hhccc
Confidence            55443

>2gfp_A EMRD, multidrug resistance protein D; membrane protein, multidrug transporter; 3.50A {Escherichia coli}

Probab=99.14  E-value=4.8e-11  Score=113.83  Aligned_cols=156  Identities=12%  Similarity=0.044  Sum_probs=117.5

Q ss_pred             CCHHHHhhhhHHHHHHHHHHHhhhhHHHHHhcHHHHHHH-hCCChhHH--HHHHHHHHHhhhhhhhhhhhhhhhhhccCc
Q 017795          127 FTLPQALMKADFLLLFFSLVLASGSGLTVIDNLGQICQS-LGYADTSI--YVSMISIWNFLGRVGGGYFSEAIVRKFAYP  203 (366)
Q Consensus       127 ~~~~~~l~~~~~~ll~~~~~~~~~~~~~~~~~l~~i~~~-~g~~~~~~--~~sl~~i~~~~g~~~~G~lsD~~grr~~~~  203 (366)
                      .++++.++++.+|.+.+..++.......+..++|.+.++ +|++....  ..+...++..+++++.|+++||++++.   
T Consensus       190 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~l~~r~~~~~---  266 (375)
T 2gfp_A          190 TSYKTLFGNSGFNCYLLMLIGGLAGIAAFEACSGVLMGAVLGLSSMTVSILFILPIPAAFFGAWFAGRPNKRFSTLM---  266 (375)
T ss_dssp             TCSTHHHHHHHHHHHHHHHHHHHHHHHHHHHHCSCSSHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHTTTTHHHHHH---
T ss_pred             HHHHHHhcCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---
Confidence            456788899999988888877777777777788887766 78876654  677778888999999999999987621   


Q ss_pred             hhHHHHHHHHH-HHHHHH--HHHh---cchhHHHHHHHHHHHHhhhhhhhHHHHHHHhhCCCchhhHHHHHHhHhhhhHH
Q 017795          204 RPVAMAVAQVV-MAFALL--YYAI---GWPGEIYVTTVLVGLSYGAHWAIVPAAASELFGLKSFGALYNFLTLASPAGSL  277 (366)
Q Consensus       204 R~~~~~~~~~~-~~~~~~--l~~~---~~~~~l~~~~~l~G~~~g~~~~~~~~~~se~f~~~~~g~~~g~~~~~~~~G~~  277 (366)
                           ..+..+ ...+..  ....   .+...+++..++.|++.+..++...+.+.|.+| +++|++.++.+....+|..
T Consensus       267 -----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~p-~~~g~~~g~~~~~~~~g~~  340 (375)
T 2gfp_A          267 -----WQSVICCLLAGLLMWIPDWFGVMNVWTLLVPAALFFFGAGMLFPLATSGAMEPFP-FLAGTAGALVGGLQNIGSG  340 (375)
T ss_dssp             -----HHHHHHHHHTSSSSSHHHHHHHHHHHHHHHHHHHHHHHHHHTSSTTHHHHHTHHH-HHHHHHHHHHHHHHHHHHH
T ss_pred             -----HHHHHHHHHHHHHHHHHhhhccccHHHHHHHHHHHHHHHHHhhHHHHHHHHHhCC-cccchHHHHHHHHHHHHHH
Confidence                 111111 121211  1111   233445567778899999889999999999998 8999999999999999999


Q ss_pred             HhhhhHHHHHhhhhh
Q 017795          278 IFSGVIASGIYDYYA  292 (366)
Q Consensus       278 i~gp~i~G~l~d~~~  292 (366)
                      + +|.+.|.+.+..+
T Consensus       341 ~-~~~~~g~l~~~~~  354 (375)
T 2gfp_A          341 V-LASLSAMLPQTGQ  354 (375)
T ss_dssp             C-CSTTCTHHHHHHH
T ss_pred             H-HHHHHHHHhcCCc
Confidence            6 9999999987665

>2cfq_A Lactose permease; transport, transport mechanism, lactose/H+ symport, sugar transport, transmembrane, formylation; 2.95A {Escherichia coli} SCOP: f.38.1.2 PDB: 1pv7_A* 1pv6_A 2cfp_A 2v8n_A 2y5y_A*

Probab=99.01  E-value=9.1e-11  Score=114.36  Aligned_cols=149  Identities=12%  Similarity=0.058  Sum_probs=93.7

Q ss_pred             HhhhhHHHHHHHHHHHhhhhHHHHHhcHHHHHHH-hCCChhHH--HHHHHHHHHhhhhhhhhhhhhhhhhhccCchhHHH
Q 017795          132 ALMKADFLLLFFSLVLASGSGLTVIDNLGQICQS-LGYADTSI--YVSMISIWNFLGRVGGGYFSEAIVRKFAYPRPVAM  208 (366)
Q Consensus       132 ~l~~~~~~ll~~~~~~~~~~~~~~~~~l~~i~~~-~g~~~~~~--~~sl~~i~~~~g~~~~G~lsD~~grr~~~~R~~~~  208 (366)
                      .++++.+|.+....++.......+...+|.+.++ +|++..+.  ..+...++..++++++|+++||+|||+.+      
T Consensus         3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~g~s~~~~g~~~~~~~~~~~i~~~~~G~lsDr~Grr~~l------   76 (417)
T 2cfq_A            3 YLKNTNFWMFGLFFFFYFFIMGAYFPFFPIWLHDINHISKSDTGIIFAAISLFSLLFQPLFGLLSDKLGLRKYL------   76 (417)
T ss_dssp             TTSCHHHHHHHHHHHHHHHHHHHHTTTHHHHHHTTTCCCTTTSHHHHHHHHHHHHHHHHHHHHHHTTSTTCCHH------
T ss_pred             cccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHH------
Confidence            4688899988777766665555666788887765 79887654  88888999999999999999999998755      


Q ss_pred             HHHHHHHHH---HHHHHHhcch--hHHHHHHHHHHHHhh----hhhhhHHHHHHHhhCCCchhhHHHHHHhHhhhhHHHh
Q 017795          209 AVAQVVMAF---ALLYYAIGWP--GEIYVTTVLVGLSYG----AHWAIVPAAASELFGLKSFGALYNFLTLASPAGSLIF  279 (366)
Q Consensus       209 ~~~~~~~~~---~~~l~~~~~~--~~l~~~~~l~G~~~g----~~~~~~~~~~se~f~~~~~g~~~g~~~~~~~~G~~i~  279 (366)
                      ..+.++.++   ..........  ...+...++.+++.|    ...+....+..+.  .++++..+|.......+|..+ 
T Consensus        77 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~--~~~~~~~~g~~~~~~~~g~~~-  153 (417)
T 2cfq_A           77 LWIITGMLVMFAPFFIFIFGPLLQYNILVGSIVGGIYLGFCFNAGAPAVEAFIEKV--SRRSNFEFGRARMFGCVGWAL-  153 (417)
T ss_dssp             HHHHHHTTSCHHHHHHHTHHHHHHTTCCHHHHGGGSSTTHHHHTTHHHHHHHHHHH--HHHHTCCHHHHSSSTTTHHHH-
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHh--hhhcccchHHHHHHHHHHHHH-
Confidence            333332222   1111111000  001122222233222    2223333333332  245677788888888999986 


Q ss_pred             hhhHHHHHhh
Q 017795          280 SGVIASGIYD  289 (366)
Q Consensus       280 gp~i~G~l~d  289 (366)
                      +|.++|++.+
T Consensus       154 ~~~l~~~l~~  163 (417)
T 2cfq_A          154 GASIVGIMFT  163 (417)
T ss_dssp             HHHHHHHHHH
T ss_pred             HHHHHHHHHH
Confidence            9999999886

>2xut_A Proton/peptide symporter family protein; transport protein, membrane protein, major facilitator super transporter; 3.62A {Shewanella oneidensis}

Probab=98.61  E-value=1.2e-07  Score=94.40  Aligned_cols=83  Identities=12%  Similarity=-0.044  Sum_probs=66.4

Q ss_pred             HHHHHHHHHHHHHHHHh----------cchhHHHHHHHHHHHHhhhhhhhHHHHHHHhhCCCchhhHHHHHHhHhhhhHH
Q 017795          208 MAVAQVVMAFALLYYAI----------GWPGEIYVTTVLVGLSYGAHWAIVPAAASELFGLKSFGALYNFLTLASPAGSL  277 (366)
Q Consensus       208 ~~~~~~~~~~~~~l~~~----------~~~~~l~~~~~l~G~~~g~~~~~~~~~~se~f~~~~~g~~~g~~~~~~~~G~~  277 (366)
                      +.++.++++++++++..          .+...+.+..++.|++.+...+...+++.|.+|++.+|+++|+.++...+|+.
T Consensus       376 ~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~  455 (524)
T 2xut_A          376 MGAGIAITGLSWIVVGTIQLMMDGGSALSIFWQILPYALLTFGEVLVSATGLEFAYSQAPKAMKGTIMSFWTLSVTVGNL  455 (524)
T ss_dssp             HHTHHHHHHHHHHTTTTTTTTTTTTCCCCSHHHHHHHHHHHHHHHHHHHHHTTTHHHHCCTTCCTTTHHHHGGGHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhcCCCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcHHHHhHHHHHHHHHHHHHHH
Confidence            34566666666655443          13345666778889998888888888999999999999999999999999999


Q ss_pred             HhhhhHHHHHhhhh
Q 017795          278 IFSGVIASGIYDYY  291 (366)
Q Consensus       278 i~gp~i~G~l~d~~  291 (366)
                      + ||.+.|.+.+..
T Consensus       456 ~-g~~~~g~~~~~~  468 (524)
T 2xut_A          456 W-VLLANVSVKSPT  468 (524)
T ss_dssp             H-HHHHHHHTTSCH
T ss_pred             H-HHHHHHHhcccc
Confidence            6 999999998854

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	366
d1pw4a_	447	Glycerol-3-phosphate transporter {Escherichia coli	99.68
d1pw4a_	447	Glycerol-3-phosphate transporter {Escherichia coli	99.51
d1pv7a_	417	Lactose permease {Escherichia coli [TaxId: 562]}	99.46
d1pv7a_	417	Lactose permease {Escherichia coli [TaxId: 562]}	99.15

>d1pw4a_ f.38.1.1 (A:) Glycerol-3-phosphate transporter {Escherichia coli [TaxId: 562]}

class: Membrane and cell surface proteins and peptides
fold: MFS general substrate transporter
superfamily: MFS general substrate transporter
family: Glycerol-3-phosphate transporter
domain: Glycerol-3-phosphate transporter
species: Escherichia coli [TaxId: 562]

Probab=99.68  E-value=6.9e-16  Score=147.45  Aligned_cols=197  Identities=16%  Similarity=0.149  Sum_probs=146.7

Q ss_pred             HHHHhhhhHHHHHHHHHHHhhhhHHHHHhcHHHHHHH-hCCChhHH--HHHHHHHHHhhhhhhhhhhhhhhhhhccCchh
Q 017795          129 LPQALMKADFLLLFFSLVLASGSGLTVIDNLGQICQS-LGYADTSI--YVSMISIWNFLGRVGGGYFSEAIVRKFAYPRP  205 (366)
Q Consensus       129 ~~~~l~~~~~~ll~~~~~~~~~~~~~~~~~l~~i~~~-~g~~~~~~--~~sl~~i~~~~g~~~~G~lsD~~grr~~~~R~  205 (366)
                      .++.++++.+|.+....++.......+..++|.+.++ .+++....  ..++..+...++++++|+++||++|++..   
T Consensus       242 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~---  318 (447)
T d1pw4a_         242 MQYVLPNKLLWYIAIANVFVYLLRYGILDWSPTYLKEVKHFALDKSSWAYFLYEYAGIPGTLLCGWMSDKVFRGNRG---  318 (447)
T ss_dssp             HHHTSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHBTTBSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSTTCHH---
T ss_pred             HHHHHcCchHHHHHHHhhhhhhhhhcchhhhhhhcccccccccchhhhhhhcchhhhhhhhhhhhhhhhhccccccc---
Confidence            4456778888988888888777777788888888765 67776655  77888889999999999999999886533   


Q ss_pred             HHHHHHHHHHHHHHHHHH---hcchhHHHHHHHHHHHHhhhhhhhHHHHHHHhhCCCchhhHHHHHHhHhhhhHHHhhhh
Q 017795          206 VAMAVAQVVMAFALLYYA---IGWPGEIYVTTVLVGLSYGAHWAIVPAAASELFGLKSFGALYNFLTLASPAGSLIFSGV  282 (366)
Q Consensus       206 ~~~~~~~~~~~~~~~l~~---~~~~~~l~~~~~l~G~~~g~~~~~~~~~~se~f~~~~~g~~~g~~~~~~~~G~~i~gp~  282 (366)
                      ........+..++.+++.   ..+.....++.++.|++.++..+.....+.|.+|.+.+|++.|+.+....+++.+.+|.
T Consensus       319 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~~g~~~~~~  398 (447)
T d1pw4a_         319 ATGVFFMTLVTIATIVYWMNPAGNPTVDMICMIVIGFLIYGPVMLIGLHALELAPKKAAGTAAGFTGLFGYLGGSVAASA  398 (447)
T ss_dssp             HHHHHHHHHHHHHHHHTTSCCTTCHHHHHHHHHHHHHHHTHHHHHHHHHHHHTSCTTHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             cccchhHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            222222222222222222   22344556667778888888888888999999999999999999998888765545899


Q ss_pred             HHHHHhhhhhhhhhhhhhhccCCCCCcccCCCCCCcccCCcchHHHHHHHHHHHHHHHHHHHHHHhhcHHHHHHHhhc
Q 017795          283 IASGIYDYYAEKQAGLLWKYNGNMLPVSFRDQETPTCLGSICYSITCGIMAGLCIIAMVMSLIVVHRTKSVYAQLYGN  360 (366)
Q Consensus       283 i~G~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~g~~~~~~~f~i~~~~~~~~~~~~~~~~~~~r~~~~~~~~~  360 (366)
                      +.|++.|..|                                |+..|++++++++++.++..++..+.+|+.++..++
T Consensus       399 ~~g~~~~~~g--------------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~e  444 (447)
T d1pw4a_         399 IVGYTVDFFG--------------------------------WDGGFMVMIGGSILAVILLIVVMIGEKRRHEQLLQE  444 (447)
T ss_dssp             HHHHHHHSSC--------------------------------SHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHGGGGG
T ss_pred             HHHHHHHHhC--------------------------------hHHHHHHHHHHHHHHHHHHHHHHHhccccHHHHHHh
Confidence            9999999887                                899999998888888877777766666655555443

>d1pw4a_ f.38.1.1 (A:) Glycerol-3-phosphate transporter {Escherichia coli [TaxId: 562]}

class: Membrane and cell surface proteins and peptides
fold: MFS general substrate transporter
superfamily: MFS general substrate transporter
family: Glycerol-3-phosphate transporter
domain: Glycerol-3-phosphate transporter
species: Escherichia coli [TaxId: 562]

Probab=99.51  E-value=3.8e-14  Score=135.06  Aligned_cols=155  Identities=14%  Similarity=0.146  Sum_probs=124.9

Q ss_pred             HHhcHHHHHHHhCCChhHH--HHHHHHHHHhhhhhhhhhhhhhhhhhccCchhHHHHHHHHHHHHHHHHHHh-----cch
Q 017795          155 VIDNLGQICQSLGYADTSI--YVSMISIWNFLGRVGGGYFSEAIVRKFAYPRPVAMAVAQVVMAFALLYYAI-----GWP  227 (366)
Q Consensus       155 ~~~~l~~i~~~~g~~~~~~--~~sl~~i~~~~g~~~~G~lsD~~grr~~~~R~~~~~~~~~~~~~~~~l~~~-----~~~  227 (366)
                      +....| +.+++|++.++.  ..+.+.++..++.+++|+++||+|||+.+      .++.++.+++.++.+.     .+.
T Consensus        44 ~~~~~p-~~~~~g~s~~~~g~~~s~~~~~~~~~~~~~G~l~Dr~g~r~~~------~~~~~~~~~~~~~~~~~~~~~~~~  116 (447)
T d1pw4a_          44 FALAMP-YLVEQGFSRGDLGFALSGISIAYGFSKFIMGSVSDRSNPRVFL------PAGLILAAAVMLFMGFVPWATSSI  116 (447)
T ss_dssp             HHHHHH-HTTSSTTCSSCHHHHHHHHHHHHHHHHHHHHHHHHHSCHHHHH------HHHHHHHHHHHHHHHHCHHHHSSS
T ss_pred             HHHHHH-HHHHhCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCchHHH------HHHHHHHHHHHhhccccchhhhhH
Confidence            333345 446789988776  78999999999999999999999998765      6666666666665442     345


Q ss_pred             hHHHHHHHHHHHHhhhhhhhHHHHHHHhhCCCchhhHHHHHHhHhhhhHHHhhhhHHHHHhhhhhhhhhhhhhhccCCCC
Q 017795          228 GEIYVTTVLVGLSYGAHWAIVPAAASELFGLKSFGALYNFLTLASPAGSLIFSGVIASGIYDYYAEKQAGLLWKYNGNML  307 (366)
Q Consensus       228 ~~l~~~~~l~G~~~g~~~~~~~~~~se~f~~~~~g~~~g~~~~~~~~G~~i~gp~i~G~l~d~~~~~~~~~~~~~~~~~~  307 (366)
                      ..+++..++.|++.|..++....+++|.+++++|+.++++.+.+..+|..+ +|.+++.+.+..+               
T Consensus       117 ~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~i-~~~~~~~~~~~~~---------------  180 (447)
T d1pw4a_         117 AVMFVLLFLCGWFQGMGWPPCGRTMVHWWSQKERGGIVSVWNCAHNVGGGI-PPLLFLLGMAWFN---------------  180 (447)
T ss_dssp             SHHHHHHHHHHHHHHHTHHHHHHHHHTTCTTTHHHHHHHHHHHHHHHHHTS-HHHHHHHHHHHTC---------------
T ss_pred             HHHHHHHHHHHHhhhhhhhHHHHHHHHHHHhhcccccccccccccchhhhh-hhhhhhhHhhhhh---------------
Confidence            678889999999999999999999999999999999999999999999996 8998888877654               


Q ss_pred             CcccCCCCCCcccCCcchHHHHHHHHHHHHHHHHHHHHHHh
Q 017795          308 PVSFRDQETPTCLGSICYSITCGIMAGLCIIAMVMSLIVVH  348 (366)
Q Consensus       308 ~~~~~~~~~~~c~g~~~~~~~f~i~~~~~~~~~~~~~~~~~  348 (366)
                                      .|++.|++.+.++++..++.+.+.+
T Consensus       181 ----------------~w~~~~~~~~~~~~~~~~~~~~~~~  205 (447)
T d1pw4a_         181 ----------------DWHAALYMPAFCAILVALFAFAMMR  205 (447)
T ss_dssp             ----------------CSTTCTHHHHHHHHHHHHHHHHHCC
T ss_pred             ----------------cccccchhhhhhHHHHHHHHHHhcc
Confidence                            3999999888887776666665543

>d1pv7a_ f.38.1.2 (A:) Lactose permease {Escherichia coli [TaxId: 562]}

class: Membrane and cell surface proteins and peptides
fold: MFS general substrate transporter
superfamily: MFS general substrate transporter
family: LacY-like proton/sugar symporter
domain: Lactose permease
species: Escherichia coli [TaxId: 562]

Probab=99.46  E-value=5.5e-13  Score=123.88  Aligned_cols=140  Identities=11%  Similarity=0.049  Sum_probs=115.0

Q ss_pred             HHHHHHHHHhhhhhhhhhhhhhhhhhccCchhHHHHHHHHHHHHHHHHHH-hcchhHHHHHHHHHHHHhhhhhhhHHHHH
Q 017795          174 YVSMISIWNFLGRVGGGYFSEAIVRKFAYPRPVAMAVAQVVMAFALLYYA-IGWPGEIYVTTVLVGLSYGAHWAIVPAAA  252 (366)
Q Consensus       174 ~~sl~~i~~~~g~~~~G~lsD~~grr~~~~R~~~~~~~~~~~~~~~~l~~-~~~~~~l~~~~~l~G~~~g~~~~~~~~~~  252 (366)
                      ..+...++..++..+.|+++||+++|+..      .++.++++++.+++. ..+...+++..++.|++.+..++...+++
T Consensus       264 ~~~~~~~~~~~~~~~~~~l~~r~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~  337 (417)
T d1pv7a_         264 VTTMGELLNASIMFFAPLIINRIGGKNAL------LLAGTIMSVRIIGSSFATSALEVVILKTLHMFEVPFLLVGCFKYI  337 (417)
T ss_dssp             HHHHHHHHHHHHHTTHHHHHHHHCHHHHH------HHHHHHHHHHHHHHHTCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             cccccccccccchhhhhhhhcccccccch------hhhHHHHHHhhhccccccccchhhHHHHHHHHHHHHHHHHHHHHH
Confidence            56666777888899999999999887654      666666666666666 45566777888889999999999999999


Q ss_pred             HHhhCCCchhhHHHHH-HhHhhhhHHHhhhhHHHHHhhhhhhhhhhhhhhccCCCCCcccCCCCCCcccCCcchHHHHHH
Q 017795          253 SELFGLKSFGALYNFL-TLASPAGSLIFSGVIASGIYDYYAEKQAGLLWKYNGNMLPVSFRDQETPTCLGSICYSITCGI  331 (366)
Q Consensus       253 se~f~~~~~g~~~g~~-~~~~~~G~~i~gp~i~G~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~g~~~~~~~f~i  331 (366)
                      .|.+|++.+|+.+++. +....+|..+ +|.++|+++|..|                                |+.+|++
T Consensus       338 ~~~~~~~~~~~~~~~~~~~~~~~g~~i-~~~~~G~l~~~~g--------------------------------~~~~~~~  384 (417)
T d1pv7a_         338 TSQFEVRFSATIYLVCFCFFKQLAMIF-MSVLAGNMYESIG--------------------------------FQGAYLV  384 (417)
T ss_dssp             HHHSCGGGHHHHHHHHHTTTHHHHHHH-HHHHHHHHHHHHC--------------------------------HHHHHHH
T ss_pred             HHHCCHhHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHC--------------------------------HHHHHHH
Confidence            9999999999999985 5567789996 9999999999988                                9999999


Q ss_pred             HHHHHHHHHHHHHHHHhhcHH
Q 017795          332 MAGLCIIAMVMSLIVVHRTKS  352 (366)
Q Consensus       332 ~~~~~~~~~~~~~~~~~~~r~  352 (366)
                      ++++++++.++.+++.++.++
T Consensus       385 ~~~~~~~~~~~~~~~l~~~~~  405 (417)
T d1pv7a_         385 LGLVALGFTLISVFTLSGPGP  405 (417)
T ss_dssp             HHHHHHHHHHHHHHHSCCSSC
T ss_pred             HHHHHHHHHHHHHHhhcCCCc
Confidence            999988888887777666543

>d1pv7a_ f.38.1.2 (A:) Lactose permease {Escherichia coli [TaxId: 562]}

class: Membrane and cell surface proteins and peptides
fold: MFS general substrate transporter
superfamily: MFS general substrate transporter
family: LacY-like proton/sugar symporter
domain: Lactose permease
species: Escherichia coli [TaxId: 562]

Probab=99.15  E-value=1.1e-10  Score=107.92  Aligned_cols=153  Identities=10%  Similarity=0.034  Sum_probs=97.5

Q ss_pred             HhhhhHHHHHHHHHHHhhhhHHHHHhcHHHHH-HHhCCChhHH--HHHHHHHHHhhhhhhhhhhhhhhhhhccCchhHHH
Q 017795          132 ALMKADFLLLFFSLVLASGSGLTVIDNLGQIC-QSLGYADTSI--YVSMISIWNFLGRVGGGYFSEAIVRKFAYPRPVAM  208 (366)
Q Consensus       132 ~l~~~~~~ll~~~~~~~~~~~~~~~~~l~~i~-~~~g~~~~~~--~~sl~~i~~~~g~~~~G~lsD~~grr~~~~R~~~~  208 (366)
                      .+||+++|.+.+.+++.......+...+|.+. +++|.+..+.  ..++..++..++.+++|+++||+|||+..      
T Consensus         3 ~lkn~~~~~l~~~~f~~~~~~~~~~~~l~~~l~~~~g~s~~~~g~i~s~~~l~~~i~~~~~G~l~Dr~grr~~l------   76 (417)
T d1pv7a_           3 YLKNTNFWMFGLFFFFYFFIMGAYFPFFPIWLHDINHISKSDTGIIFAAISLFSLLFQPLFGLLSDKLGLRKYL------   76 (417)
T ss_dssp             HHHSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHTHHHHHHHHHHHTTCTHH------
T ss_pred             cccCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCchHHH------
Confidence            57999999998888877766666667788765 4589998876  78889999999999999999999998755      


Q ss_pred             HHHHHHHHHHHHHHHh-cchh----HHHHHHHHHHHHhhhhhhhHHHHHHHhhCC--CchhhHHHHHHhHhhhhHHHhhh
Q 017795          209 AVAQVVMAFALLYYAI-GWPG----EIYVTTVLVGLSYGAHWAIVPAAASELFGL--KSFGALYNFLTLASPAGSLIFSG  281 (366)
Q Consensus       209 ~~~~~~~~~~~~l~~~-~~~~----~l~~~~~l~G~~~g~~~~~~~~~~se~f~~--~~~g~~~g~~~~~~~~G~~i~gp  281 (366)
                      ..+..+..++..++.. ....    ..++...+.+.+.+...........+....  +.+....+........+..+ +|
T Consensus        77 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~  155 (417)
T d1pv7a_          77 LWIITGMLVMFAPFFIFIFGPLLQYNILVGSIVGGIYLGFCFNAGAPAVEAFIEKVSRRSNFEFGRARMFGCVGWAL-GA  155 (417)
T ss_dssp             HHHHHHHHHTHHHHHHHTHHHHHHTTCHHHHHHTTTTGGGGGTTHHHHHHHHHHHHHHHHSCCHHHHHHHHHHHHHH-HH
T ss_pred             HHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHhhhcccccccchhhcccccccchhhhhHHHHHHHhhhhcccccc-cc
Confidence            4444444444443332 1111    122333333333333333333322222222  23444556666677777775 88


Q ss_pred             hHHHHHhhhh
Q 017795          282 VIASGIYDYY  291 (366)
Q Consensus       282 ~i~G~l~d~~  291 (366)
                      .++|.+.+..
T Consensus       156 ~~~~~l~~~~  165 (417)
T d1pv7a_         156 SIVGIMFTIN  165 (417)
T ss_dssp             HHHHHHHHHC
T ss_pred             cccccccccc
Confidence            8888887654