Citrus Sinensis ID: 017798

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-----
Protein Sequence
MAATMDFYSSRPVESSCDPFGGELMEALEPFMKSASASTSPSASPSSYSSSSSTLPPSTSYNYQSYPPPLPTIASLSNLLYPDACSTSSTHLFANGLSMNDLGLQQQQQHYQQGTVGLNNLNLFQIQQIQLQNQNFWPQQQQKSHLYPQGLNFLSPKPVPMKTVGCPPPKPAKLYRGVRQRHWGKWVAEIRLPKNRTRLWLGTFDTAEEAALAYDKAAYKLRGDFARLNFPNLRHNGSHIGGEFGEYKPLHSSVDAKLAAICENLAETQKLGTSKKEKQSNSAQKKRHRSGNKKVDVVEGAGGAGVGVKNECSLSDGSAGSSPVSDLTCQDLTEPPSELELDAASENFMLQKYPSYEIDWASILS
Secondary Structure (PSIPRED)
cccccccccccccccccccccccHHHHcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHcccccccccccccHHHHHHHHHcccccccHHHHcccccccccccccccccccccccccccccccccccccccccccEEEEEEccccccEEEEcccccHHHHHHHHHHHHHHHcccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHcccccccHHcccccHHHcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHccccccc
Secondary Structure Prediction (SSPRO)
cccHEEcccccccccccccccHHHHHHHHHHcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHccccccccccccccccccccccccccccccccccEccEEEcccccEEEEEEccccccEEEEcccccHHHHHHHHHHHHHHHHcccEEEcccccccccccccccccccccccHHHHHHHHHHHHHHHcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccEEEcHHHHHc
Coil and Loop (DISEMBL)
maatmdfyssrpvesscdpfgGELMEALEPfmksasastspsaspssyssssstlppstsynyqsyppplptiaslsnllypdacstssthlfanglsmndlglQQQQQHYQqgtvglnnLNLFQIQQIQLQnqnfwpqqqqkshlypqglnflspkpvpmktvgcpppkpaklyrgvrqrhwgkwvaeirlpknrtrlwlgtFDTAEEAALAYDKAAYKLRGdfarlnfpnlrhngshiggefgeykplhssVDAKLAAICENLAETQklgtskkekqsnsaqkkrhrsgnkkvdvvegaggagvgvknecslsdgsagsspvsdltcqdlteppselelDAASENfmlqkypsyeidwASILS
Flexible Loop (DISEMBL)
maatmdfyssrpvessCDPFGGELMEALEPFMKSASASTSPSASPSSYSSSSSTLPPSTSYNYQSYPPPLPTIASLSNLLYPDACSTSSTHLFANGLSMNDLGLQQQQQHYQQGTVGLNNLNLFQIQQIQLQNQNFWPQQQQKSHLYPQGLNFLSPKPVPMKTVGCPPPKPAKlyrgvrqrhwgkwvaeirlpknrtrlwLGTFDTAEEAALAYDKAAYKLRGDFARLNFPNLRHNGSHIGGEFGEYKPLHSSVDAKLAAICENLAEtqklgtskkekqsnsaqkkrhrsgnkkvdvvegaggagvgVKNECSLSDGSAGSSPVSDLTCQDLTEPPSELELDAASENFmlqkypsyeidwasils
Low Complexity Region (SEG)
MAATMDFYSSRPVESSCDPFGGELMEALEPFMKsasastspsaspssyssssstlppstsYNYQSYPPPLPTIASLSNLLYPDACSTSSTHLFANGLSMNDLGLqqqqqhyqqGTVGlnnlnlfqiqqiqlqnqnfwpqqqqKSHLYPQGLNFLSPKPVPMKTVGCPPPKPAKLYRGVRQRHWGKWVAEIRLPKNRTRLWLGTFDTaeeaalaydkaayklRGDFARLNFPNLRHNGSHIGGEFGEYKPLHSSVDAKLAAICENLAETQKLGTSKKEKQSNSAQKKRHRSGNKKvdvvegaggagvgvKNECSLSDGSAGSSPVSDLTCQDLTEPPSELELDAASENFMLQKYPSYEIDWASILS
Disordered region (IsUnstruct)
***********************************************************************TIASLSNLLYPDACSTSSTHLFANGLSMNDLGLQQQQQHYQQGTVGLNNLNLFQIQQIQLQNQNFWPQQ****HLYPQGLNFL*****************AKLYRGVRQRHWGKWVAEIRLPKNRTRLWLGTFDTAEEAALAYDKAAYKLRGDFARLNFPNLRHNGSHIGGEFGEYKPLHSSVDAKLAAICENL**********************************************************************************FMLQKYPSYEIDWA****
Disordered Region (DISOPRED)
MAATMDFY******************ALE*****************************************************************************************************************************************************RQRHWGKWVAEIRLPKNRTRLWLGTFDTAEEAALAYDKAAYKLRGDFARLNFPN**************************************************************************************************DLTEPPSELELDAASENFMLQKYPSYEIDWASILS
Disordered Region (DISEMBL)
***************SCDPFGGELMEALEPFM***************************SYNYQSYPPPLPTIASLSNLLYPDACSTSSTHLFANGLSMNDLGLQQQQQHYQQGTVGLNNLNLFQIQQIQLQNQNFWPQQQQKSHLYPQGLNFLSPKPVPMKTVGCPPPKPAKLYRGVRQRHWGKWVAEIRLPKNRTRLWLGTFDTAEEAALAYDKAAYKLRGDFARLNFPNLRHNGSHIGGEFGEYKPLHSSVDAKLAAICENLAETQ************************KVDVVEGAGGAGVGVKNECS**************TCQDLTEPPSELELDAASENFMLQKYPSYEIDWASILS
Disordered Region (DISPRO)
**********************ELMEALE**********************************QSYPPPLPTIASLSNLLYPDACSTSSTHLFANGLSM***************TVGLNNLNLFQIQQIQLQNQNFWPQ********************************AKLYRGVRQRHWGKWVAEIRLPKNRTRLWLGTFDTAEEAALAYDKAAYKLRGDFARLNFPNLRH************KPLHSSVDAKLAAICENLAE*************************************************************CQDLTEPPSELELDAASENFMLQKYPSYEIDWASILS
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
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TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MAATMDFYSSRPVESSCDPFGGELMEALEPFMKSASASTSPSASPSSYSSSSSTLPPSTSYNYQSYPPPLPTIASLSNLLYPDACSTSSTHLFANGLSMNDLGLQQQQQHYQQGTVGLNNLNLFQIQQIQLQNQNFWPQQQQKSHLYPQGLNFLSPKPVPMKTVGCPPPKPAKLYRGVRQRHWGKWVAEIRLPKNRTRLWLGTFDTAEEAALAYDKAAYKLRGDFARLNFPNLRHNGSHIGGEFGEYKPLHSSVDAKLAAICENLAETQKLGTSKKEKQSNSAQKKRHRSGNKKVDVVEGAGGAGVGVKNECSLSDGSAGSSPVSDLTCQDLTEPPSELELDAASENFMLQKYPSYEIDWASILS
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	365	2.2.26 [Sep-21-2011]
Q8H1E4	334	Ethylene-responsive trans	yes	no	0.873	0.955	0.507	5e-76
Q9LM15	261	Ethylene-responsive trans	no	no	0.528	0.739	0.573	4e-53
Q9SKW5	314	Ethylene-responsive trans	no	no	0.816	0.949	0.434	7e-53
O65665	272	Ethylene-responsive trans	no	no	0.6	0.805	0.474	1e-48
Q9SIE4	261	Ethylene-responsive trans	no	no	0.610	0.854	0.418	1e-41
Q9FJQ2	277	Ethylene-responsive trans	no	no	0.594	0.783	0.435	9e-41
Q9SVQ0	388	Ethylene-responsive trans	no	no	0.284	0.268	0.594	5e-29
Q9SKT1	336	Ethylene-responsive trans	no	no	0.183	0.199	0.785	5e-27
Q9M0J3	292	Ethylene-responsive trans	no	no	0.164	0.205	0.783	7e-23
Q9C7W2	335	Ethylene-responsive trans	no	no	0.312	0.340	0.556	7e-23

>sp|Q8H1E4|RAP24_ARATH Ethylene-responsive transcription factor RAP2-4 OS=Arabidopsis thaliana GN=RAP2-4 PE=1 SV=1

 Score =  285 bits (728), Expect = 5e-76,   Method: Compositional matrix adjust.
 Identities = 193/380 (50%), Positives = 235/380 (61%), Gaps = 61/380 (16%)

Query: 1   MAATMDFYS-SRPVESSCDPFGGELMEALEPFMKSASASTSPSASPSSYSSSSSTLPPST 59
           MAA M+ Y+ SR  + S    GGELM+AL PF+KS S S S S++    +S+S+ L PS 
Sbjct: 1   MAAAMNLYTCSRSFQDS----GGELMDALVPFIKSVSDSPSSSSA----ASASAFLHPS- 51

Query: 60  SYNYQSYPPPLPTIASLSNLLYPDACSTSSTHLFANGLSMNDLGLQQQQQHYQQGTVGLN 119
           +++     PPLP         YPD  ST  T  F+ G  +   G            +GLN
Sbjct: 52  AFSL----PPLPGY-------YPD--STFLTQPFSYGSDLQQTG----------SLIGLN 88

Query: 120 NLNLFQIQQIQLQNQNFWPQQQQKSHLYPQGLNFLSPKPVPMKTVGCP----------PP 169
           NL+  QI QIQ Q  +  P     ++      N LSPKP+ MK  G            P 
Sbjct: 89  NLSSSQIHQIQSQIHHPLPPTHHNNNN--SFSNLLSPKPLLMKQSGVAGSCFAYGSGVPS 146

Query: 170 KPAKLYRGVRQRHWGKWVAEIRLPKNRTRLWLGTFDTAEEAALAYDKAAYKLRGDFARLN 229
           KP KLYRGVRQRHWGKWVAEIRLP+NRTRLWLGTFDTAEEAALAYDKAAYKLRGDFARLN
Sbjct: 147 KPTKLYRGVRQRHWGKWVAEIRLPRNRTRLWLGTFDTAEEAALAYDKAAYKLRGDFARLN 206

Query: 230 FPNLRHNGSHIGGEFGEYKPLHSSVDAKLAAICENLAETQKLGTSKKEKQSNSAQKKRHR 289
           FPNLRHNGSHIGG+FGEYKPLHSSVDAKL AIC+++AETQ     K++K + S++K+  +
Sbjct: 207 FPNLRHNGSHIGGDFGEYKPLHSSVDAKLEAICKSMAETQ-----KQDKSTKSSKKREKK 261

Query: 290 SG----NKKVDVVEGAGGAGVGVKNECSLSDGSAGSSPVSDLTCQDLTEPPSELELDAAS 345
                 ++KV   E +   G G        + +AGSSP+SDLT  D  EPP        +
Sbjct: 262 VSSPDLSEKVKAEENSVSIG-GSPPVTEFEESTAGSSPLSDLTFADPEEPPQ------WN 314

Query: 346 ENFMLQKYPSYEIDWASILS 365
           E F L+KYPSYEIDW SIL+
Sbjct: 315 ETFSLEKYPSYEIDWDSILA 334

Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways.
Arabidopsis thaliana (taxid: 3702)

>sp|Q9LM15|RA213_ARATH Ethylene-responsive transcription factor RAP2-13 OS=Arabidopsis thaliana GN=RAP2-13 PE=1 SV=1

 Score =  208 bits (530), Expect = 4e-53,   Method: Compositional matrix adjust.
 Identities = 121/211 (57%), Positives = 136/211 (64%), Gaps = 18/211 (8%)

Query: 154 LSPKPVPMKTVGCPPPKPAKLYRGVRQRHWGKWVAEIRLPKNRTRLWLGTFDTAEEAALA 213
           LSPKPV MK  G    KP KLYRGVRQRHWGKWVAEIRLP+NRTRLWLGTFDTAEEAALA
Sbjct: 62  LSPKPVSMKQTGTSAAKPTKLYRGVRQRHWGKWVAEIRLPRNRTRLWLGTFDTAEEAALA 121

Query: 214 YDKAAYKLRGDFARLNFPNLRHNGSHIGGEFGEYKPLHSSVDAKLAAICENLAETQKLGT 273
           YDKAAYKLRGDFARLNFP+LRHN         EY+PL SSVDAKL AIC+NLAE     T
Sbjct: 122 YDKAAYKLRGDFARLNFPDLRHN--------DEYQPLQSSVDAKLEAICQNLAE-----T 168

Query: 274 SKKEKQSNSAQKKRHRSGNKKVDVVEGAGGAGVGVKNECSLSDGSAGSSPVSDLTCQDLT 333
           ++K+ +S      R RS    V + E    +                SSP+S+LT  D  
Sbjct: 169 TQKQVRSTKKSSSRKRSSTVAVKLPEEDYSSAGSSPLLTESYGSGGSSSPLSELTFGD-- 226

Query: 334 EPPSELELDAASENFMLQKYPSYEIDWASIL 364
              +E E+        L+KYPSYEIDW SIL
Sbjct: 227 ---TEEEIQPPWNENALEKYPSYEIDWDSIL 254

Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9SKW5|ERF55_ARATH Ethylene-responsive transcription factor ERF055 OS=Arabidopsis thaliana GN=ERF055 PE=2 SV=1

 Score =  207 bits (528), Expect = 7e-53,   Method: Compositional matrix adjust.
 Identities = 153/352 (43%), Positives = 189/352 (53%), Gaps = 54/352 (15%)

Query: 21  GGELMEALEPFMKSASASTSPSASPSS---YSSSSSTLPPSTSYNYQSYPPPLPTIASLS 77
           GGELMEAL+PF KSAS S S  A  SS   ++S+ + L  S+SY    Y P      S S
Sbjct: 10  GGELMEALQPFYKSASTSASNPAFASSNDAFASAPNDLFSSSSY----YNPHASLFPSHS 65

Query: 78  NLLYPDACSTSSTHLFANGLSMNDLGLQQQQQHYQQGTVGLNNLNLFQIQQIQLQNQNFW 137
              YPD  S S T+  + G   +DL   QQ ++YQ               Q   QN   +
Sbjct: 66  TTSYPDIYSGSMTYPSSFG---SDL---QQPENYQS--------------QFHYQNTITY 105

Query: 138 PQQQQKSHLYPQGLNFLSPKPVPMKTVGCPPP----KPAKLYRGVRQRHWGKWVAEIRLP 193
             Q   + +    LNF+ P      T   P      KPAKLYRGVRQRHWGKWVAEIRLP
Sbjct: 106 THQDNNTCM----LNFIEPSQPGFMTQPGPSSGSVSKPAKLYRGVRQRHWGKWVAEIRLP 161

Query: 194 KNRTRLWLGTFDTAEEAALAYDKAAYKLRGDFARLNFPNLRHNGSHIGGEFGEYKPLHSS 253
           +NRTRLWLGTFDTAEEAALAYD+AA+KLRGD ARLNFP LR+       + GEY P+ ++
Sbjct: 162 RNRTRLWLGTFDTAEEAALAYDRAAFKLRGDSARLNFPALRYQTGSSPSDTGEYGPIQAA 221

Query: 254 VDAKLAAICENLAETQKLGTSKKEKQSNSAQKKRHRSGNKKVDVVEGAGGAGVGVKNECS 313
           VDAKL AI   LAE +            +   K  R+  K+      +       +    
Sbjct: 222 VDAKLEAI---LAEPK------------NQPGKTERTSRKRAKAAASSAEQPSAPQQHSG 266

Query: 314 LSDGSAGSSPVSDLTCQDLTEPPSELELDAASENFMLQKYPSYEIDWASILS 365
             +     SP SD+  Q++ + P E+  +   ENFML K PSYEIDWASILS
Sbjct: 267 SGESDGSGSPTSDVMVQEMCQEP-EMPWN---ENFMLGKCPSYEIDWASILS 314

Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways.

Arabidopsis thaliana (taxid: 3702)

>sp|O65665|ERF60_ARATH Ethylene-responsive transcription factor ERF060 OS=Arabidopsis thaliana GN=ERF060 PE=2 SV=1

 Score =  194 bits (492), Expect = 1e-48,   Method: Compositional matrix adjust.
 Identities = 121/255 (47%), Positives = 149/255 (58%), Gaps = 36/255 (14%)

Query: 112 QQGTVGLNNLNLFQIQQIQLQNQNFWPQQQQKSHLYPQGLNFLSPKPVPMKTVGCPPPKP 171
           Q  ++GLN L  +QI QIQ Q        Q+++ + P     L+PKPVPMK +       
Sbjct: 45  QTTSLGLNQLTPYQIHQIQNQ------LNQRRNIISPN----LAPKPVPMKNMTA----- 89

Query: 172 AKLYRGVRQRHWGKWVAEIRLPKNRTRLWLGTFDTAEEAALAYDKAAYKLRGDFARLNFP 231
            KLYRGVRQRHWGKWVAEIRLPKNRTRLWLGTFDTAEEAA+AYD AAYKLRG+FARLNFP
Sbjct: 90  QKLYRGVRQRHWGKWVAEIRLPKNRTRLWLGTFDTAEEAAMAYDLAAYKLRGEFARLNFP 149

Query: 232 NLRHNGSHIGGEFGEYKPLHSSVDAKLAAICENLAETQKLGTSKKEKQSNSAQKKRHRSG 291
             RH   + GG    + PLHSSVDAKL  IC++L +T+ +     E +    + +   S 
Sbjct: 150 QFRHEDGYYGGG-SCFNPLHSSVDAKLQEICQSLRKTEDIDLPCSETELFPPKTEYQES- 207

Query: 292 NKKVDVVEGAGGAGVGVKNECSLSDGS--AGSSPVSDLTC-QDLTEPPSELELDAASENF 348
                        G    +E S SD S    SSP S +T   D     S+   D    +F
Sbjct: 208 -----------EYGFLRSDENSFSDESHVESSSPESGITTFLDF----SDSGFDEIG-SF 251

Query: 349 MLQKYPSYEIDWASI 363
            L+K+PS EIDW +I
Sbjct: 252 GLEKFPSVEIDWDAI 266

Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9SIE4|ERF56_ARATH Ethylene-responsive transcription factor ERF056 OS=Arabidopsis thaliana GN=ERF056 PE=2 SV=1

 Score =  170 bits (431), Expect = 1e-41,   Method: Compositional matrix adjust.
 Identities = 108/258 (41%), Positives = 141/258 (54%), Gaps = 35/258 (13%)

Query: 116 VGLNNLNLFQIQQIQLQNQNFWPQQQQKSHLYPQGLNFLSPKPVPMKTVGCPPPKPAKLY 175
           +GLN L  +QI QIQ           Q +H      N LSP  + MK +     K   LY
Sbjct: 23  LGLNQLTPYQIHQIQ----------NQLNHRRSTISN-LSPNRIRMKNLTPSTSKTKNLY 71

Query: 176 RGVRQRHWGKWVAEIRLPKNRTRLWLGTFDTAEEAALAYDKAAYKLRGDFARLNFPNLRH 235
           RGVRQRHWGKWVAEIRLPKNRTRLWLGTF+TAE+AALAYD+AA++LRGD A+LNFPNL H
Sbjct: 72  RGVRQRHWGKWVAEIRLPKNRTRLWLGTFETAEKAALAYDQAAFQLRGDIAKLNFPNLIH 131

Query: 236 NGSHIGGEFGEYKPLHSSVDAKLAAICENLAETQKLGTSKKEKQSNSAQKKRHRSGN--- 292
                     +  PL SSVD KL AIC++L +T+++ +   + +  S      ++     
Sbjct: 132 E---------DMNPLPSSVDTKLQAICKSLRKTEEICSVSDQTKEYSVYSVSDKTELFLP 182

Query: 293 -------KKVDVVEGAGGAGVGVKNECSLSDGSAGSSPVSDLTCQDLTEPPSELELDAAS 345
                  K+  +            +E SL D S      SD T  D ++  +E E   + 
Sbjct: 183 KAELFLPKREHLETNELSNESPRSDETSLLDESQAEYSSSDKTFLDFSD--TEFEEIGS- 239

Query: 346 ENFMLQKYPSYEIDWASI 363
             F L+K+PS EIDW +I
Sbjct: 240 --FGLRKFPSVEIDWDAI 255

Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9FJQ2|ERF57_ARATH Ethylene-responsive transcription factor ERF057 OS=Arabidopsis thaliana GN=ERF057 PE=2 SV=1

 Score =  167 bits (424), Expect = 9e-41,   Method: Compositional matrix adjust.
 Identities = 111/255 (43%), Positives = 145/255 (56%), Gaps = 38/255 (14%)

Query: 112 QQGTVGLNNLNLFQIQQIQLQNQNFWPQQQQKSHLYPQGLNFLSPKPVPMKTVGCPPPKP 171
           Q G +GLN L   QI QIQ +      Q ++++     G + L+ KP  MK +     KP
Sbjct: 54  QTGPIGLNQLTPTQILQIQTELHLRQNQSRRRA-----GSHLLTAKPTSMKKIDVAT-KP 107

Query: 172 AKLYRGVRQRHWGKWVAEIRLPKNRTRLWLGTFDTAEEAALAYDKAAYKLRGDFARLNFP 231
            KLYRGVRQR WGKWVAEIRLPKNRTRLWLGTF+TA+EAALAYD+AA+K+RGD ARLNFP
Sbjct: 108 VKLYRGVRQRQWGKWVAEIRLPKNRTRLWLGTFETAQEAALAYDQAAHKIRGDNARLNFP 167

Query: 232 NLRHNGSHIGGEFGEYKPLHS-SVDAKLAAICENLAETQKLGTSKKEKQSNSAQKKRHRS 290
           ++           G YK + S S++AK+ +IC     +  L   + EKQ+ + +     S
Sbjct: 168 DIVRQ--------GHYKQILSPSINAKIESIC----NSSDLPLPQIEKQNKTEEVLSGFS 215

Query: 291 GNKKVDVVEGAGGAGVGVKNECSLSDGSAGSSPVSDLTCQDLTEPPSELELDAASENFM- 349
             +K    E   G   G         G +GSSP SD+T  D +      +     E+F+ 
Sbjct: 216 KPEK----EPEFGEIYGC--------GYSGSSPESDITLLDFSS-----DCVKEDESFLM 258

Query: 350 -LQKYPSYEIDWASI 363
            L KYPS EIDW +I
Sbjct: 259 GLHKYPSLEIDWDAI 273

Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9SVQ0|ERF62_ARATH Ethylene-responsive transcription factor ERF062 OS=Arabidopsis thaliana GN=ERF062 PE=2 SV=1

 Score =  129 bits (323), Expect = 5e-29,   Method: Compositional matrix adjust.
 Identities = 66/111 (59%), Positives = 79/111 (71%), Gaps = 7/111 (6%)

Query: 132 QNQNFWPQQQQKSHLYPQ---GLNFLSP-KPVPMKTVG---CPPPKPAKLYRGVRQRHWG 184
           QN+N W +  +    YP    G  +LS  K  PMK+          P KLYRGVRQRHWG
Sbjct: 182 QNRNEWVEINKTLTNYPSKGFGNYWLSTTKTQPMKSKTRKVVQTTTPTKLYRGVRQRHWG 241

Query: 185 KWVAEIRLPKNRTRLWLGTFDTAEEAALAYDKAAYKLRGDFARLNFPNLRH 235
           KWVAEIRLP+NRTR+WLGTF+TAE+AA+AYD AAY LRG+FA LNFP+L+H
Sbjct: 242 KWVAEIRLPRNRTRVWLGTFETAEQAAMAYDTAAYILRGEFAHLNFPDLKH 292

Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9SKT1|ERF53_ARATH Ethylene-responsive transcription factor ERF053 OS=Arabidopsis thaliana GN=ERF053 PE=2 SV=1

 Score =  122 bits (306), Expect = 5e-27,   Method: Compositional matrix adjust.
 Identities = 55/70 (78%), Positives = 61/70 (87%), Gaps = 3/70 (4%)

Query: 167 PPPKP---AKLYRGVRQRHWGKWVAEIRLPKNRTRLWLGTFDTAEEAALAYDKAAYKLRG 223
           PP +P    KLYRGVRQRHWGKWVAEIR P+NRTRLWLGTFDTAEEAA+AYD+ A+KLRG
Sbjct: 176 PPVQPFSATKLYRGVRQRHWGKWVAEIRKPRNRTRLWLGTFDTAEEAAMAYDREAFKLRG 235

Query: 224 DFARLNFPNL 233
           + ARLNFP L
Sbjct: 236 ETARLNFPEL 245

Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9M0J3|ERF54_ARATH Ethylene-responsive transcription factor ERF054 OS=Arabidopsis thaliana GN=ERF054 PE=2 SV=1

 Score =  108 bits (270), Expect = 7e-23,   Method: Compositional matrix adjust.
 Identities = 47/60 (78%), Positives = 52/60 (86%)

Query: 172 AKLYRGVRQRHWGKWVAEIRLPKNRTRLWLGTFDTAEEAALAYDKAAYKLRGDFARLNFP 231
            KLYRGVRQR WGKWVAEIR P++R RLWLGTFDTAEEAA+AYD+ A+KLRG  A LNFP
Sbjct: 140 TKLYRGVRQRQWGKWVAEIRKPRSRARLWLGTFDTAEEAAMAYDRQAFKLRGHSATLNFP 199

Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9C7W2|ERF61_ARATH Ethylene-responsive transcription factor ERF061 OS=Arabidopsis thaliana GN=ERF061 PE=2 SV=1

 Score =  108 bits (270), Expect = 7e-23,   Method: Compositional matrix adjust.
 Identities = 64/115 (55%), Positives = 85/115 (73%), Gaps = 1/115 (0%)

Query: 170 KPAKLYRGVRQRHWGKWVAEIRLPKNRTRLWLGTFDTAEEAALAYDKAAYKLRGDFARLN 229
           K  KLYRGVRQRHWGKWVAEIRLP+NR R+WLGT+DTAE AA AYD+AAYKLRG++ARLN
Sbjct: 131 KKKKLYRGVRQRHWGKWVAEIRLPQNRMRVWLGTYDTAEAAAYAYDRAAYKLRGEYARLN 190

Query: 230 FPNLRHNGSHIG-GEFGEYKPLHSSVDAKLAAICENLAETQKLGTSKKEKQSNSA 283
           FPNL+     +G G+  +   L ++VD K+ +IC+ + + +   + K  K S++ 
Sbjct: 191 FPNLKDPSELLGLGDSSKLIALKNAVDGKIQSICQRVRKERAKKSVKVSKNSSAT 245

Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways.

Arabidopsis thaliana (taxid: 3702)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	365
428230424	376	ethylene-responsive element binding-fact	0.956	0.928	0.595	1e-100
225459344	367	PREDICTED: ethylene-responsive transcrip	0.915	0.910	0.539	1e-89
255545670	383	DNA binding protein, putative [Ricinus c	0.953	0.908	0.560	1e-89
118488563	344	unknown [Populus trichocarpa]	0.906	0.962	0.577	4e-88
386646590	355	dehydration-responsive element-binding p	0.917	0.943	0.545	1e-85
292668921	365	AP2 domain class transcription factor [M	0.936	0.936	0.538	3e-85
224063209	325	AP2/ERF domain-containing transcription	0.860	0.966	0.576	4e-83
323650795	271	DREB1p [Hevea brasiliensis]	0.698	0.940	0.614	4e-81
356515802	302	PREDICTED: ethylene-responsive transcrip	0.816	0.986	0.528	5e-80
336109262	318	dehydration-responsive element binding p	0.854	0.981	0.536	2e-79

>gi|428230424|gb|AFY98895.1| ethylene-responsive element binding-factor [Jatropha curcas]

 Score =  369 bits (948), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 233/391 (59%), Positives = 263/391 (67%), Gaps = 42/391 (10%)

Query: 1   MAATMDFYSSRPVESSCDPFGGELMEALEPFMKSASAST-SPSASPSSYSSSSSTLPPST 59
           MA TMDFYSSR V+S  D FGGELMEALEPFMKSA++ST    ++  S SSSS    PST
Sbjct: 1   MATTMDFYSSRHVQS--DLFGGELMEALEPFMKSATSSTIPSPSATPSISSSSLPPLPST 58

Query: 60  SYNYQSYPPPLPTIASLS------NLLYPDACSTSSTHLFANGLSMNDLGLQQQQQHYQQ 113
           SYNY S+ P   +   +S      + LY D CSTS+   F+NG S++D    QQ      
Sbjct: 59  SYNYLSFSPSPSSSPLVSFPQQNLSFLYSDGCSTSTALPFSNGFSIHDPNRLQQPT---- 114

Query: 114 GTVGLNNLNLFQIQQIQ----LQNQN---FWPQQQQKSHLYPQGLNFLSPKPVPMKTVGC 166
            ++GLN+L   QI QIQ     QNQN   F     Q  H    GLNFL PKPVPMK VG 
Sbjct: 115 SSIGLNHLTPTQIHQIQTQIHYQNQNGFNFQNFHTQNQH----GLNFLGPKPVPMKQVGS 170

Query: 167 PPPKPAKLYRGVRQRHWGKWVAEIRLPKNRTRLWLGTFDTAEEAALAYDKAAYKLRGDFA 226
           PP KP KLYRGVRQRHWGKWVAEIRLPKNRTRLWLGTFDTAEEAALAYDKAAYKLRGDFA
Sbjct: 171 PP-KPTKLYRGVRQRHWGKWVAEIRLPKNRTRLWLGTFDTAEEAALAYDKAAYKLRGDFA 229

Query: 227 RLNFPNLRHNGSHIGGEFGEYKPLHSSVDAKLAAICENLAETQKLGTSKKEKQSNSAQKK 286
           RLNFPNLRH GSHI G FGEYKPLHSSVDAKL AIC++LAE+QK G  K EKQSNS+ KK
Sbjct: 230 RLNFPNLRHQGSHIEGSFGEYKPLHSSVDAKLQAICQSLAESQKQG-GKAEKQSNSSAKK 288

Query: 287 RHRSGNK--KVDVVEGAGGAGVGVKNEC----------SLSDGSAGSSPVSDLTCQDLTE 334
           +   G      + V+ A      V ++C          + S+ S GSSP+SDLT  DL E
Sbjct: 289 KTSVGTTPATAEKVKEAKAPQQVVPDKCCKVETPSSVLTESEASGGSSPLSDLTFPDLEE 348

Query: 335 PPSELELDAASENFMLQKYPSYEIDWASILS 365
            P    LD  S NF L+KYPSYEIDWAS+LS
Sbjct: 349 AP----LDVDSGNFNLEKYPSYEIDWASLLS 375

Source: Jatropha curcas

Species: Jatropha curcas

Genus: Jatropha

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225459344|ref|XP_002285802.1| PREDICTED: ethylene-responsive transcription factor RAP2-4-like isoform 1 [Vitis vinifera]

 Score =  335 bits (860), Expect = 1e-89,   Method: Compositional matrix adjust.
 Identities = 213/395 (53%), Positives = 251/395 (63%), Gaps = 61/395 (15%)

Query: 1   MAATMDFYSSRPVES-SCDPFGGELMEALEPFMKSASASTSPSASPSSYSSSSSTLPPST 59
           MA T+DFYSSRP++S SC   GGELMEALEPFMK+AS+++  S    S S S+S+  PS+
Sbjct: 1   MAPTVDFYSSRPLQSASC---GGELMEALEPFMKNASSTSPSSTLSPSSSPSTSSFYPSS 57

Query: 60  SYNYQSYPPPLPTIASLSNLLYPDACSTSSTHLFANGLSMNDLGLQQQQQHYQQGTVGLN 119
            +    Y P         +  YPD CSTS+TH+ + G S +DL     Q     G +GLN
Sbjct: 58  DF----YSP--------ISTQYPDGCSTSTTHVISQGFSSHDL-----QGFEHSGPIGLN 100

Query: 120 NL-------------------NLFQIQQIQLQNQNFWPQQQQKSHLYPQGLNFLSPKPVP 160
           +L                   ++  +      N    PQ QQ+     Q  NFLSPKP+P
Sbjct: 101 HLTPSQIHQIQAQIQLQQHHNHMPAVAAAASFNTQNLPQWQQRQ----QAPNFLSPKPIP 156

Query: 161 MKTVGCPPPKPAKLYRGVRQRHWGKWVAEIRLPKNRTRLWLGTFDTAEEAALAYDKAAYK 220
           MK VG PP KP KLYRGVRQRHWGKWVAEIRLPKNRTRLWLGTFDTAEEAALAYDKAAYK
Sbjct: 157 MKQVGVPP-KPTKLYRGVRQRHWGKWVAEIRLPKNRTRLWLGTFDTAEEAALAYDKAAYK 215

Query: 221 LRGDFARLNFPNLRHNGSHIGGEFGEYKPLHSSVDAKLAAICENLAETQKLGTSKKEKQS 280
           LRGDFARLNFPNLRH GSHIGGEFG+YKPLHSSVDAKL AIC++LAETQK G   + K+S
Sbjct: 216 LRGDFARLNFPNLRHQGSHIGGEFGDYKPLHSSVDAKLQAICQSLAETQKQGKPTQGKKS 275

Query: 281 NSAQKKRHRSGNKKVDVVEGAGGAGVGVKNECSL----------SDGSAGSSPVSDLTCQ 330
            S  +    S ++ V V E +  +  G + +C +          SDGS GSSP+SDLT  
Sbjct: 276 RS--RAVAPSASQPVTVSESSTLSEQGSE-DCKVEPTSSSMFTESDGSGGSSPLSDLTFP 332

Query: 331 DLTEPPSELELDAASENFMLQKYPSYEIDWASILS 365
           D  E   E     A ENF LQKYPS EIDWA+I S
Sbjct: 333 DDCE---EAPFYGAWENFNLQKYPSNEIDWAAISS 364

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255545670|ref|XP_002513895.1| DNA binding protein, putative [Ricinus communis] gi|223546981|gb|EEF48478.1| DNA binding protein, putative [Ricinus communis]

 Score =  335 bits (860), Expect = 1e-89,   Method: Compositional matrix adjust.
 Identities = 223/398 (56%), Positives = 254/398 (63%), Gaps = 50/398 (12%)

Query: 1   MAATMDFYSSRPVES-SCDPFGG-ELMEALEPFMKSASASTSPSASPSSYSSSSSTLPPS 58
           MAATMDFYSS    +   D FGG ELMEALEPFM+SAS+S++PS SPSS S SS    PS
Sbjct: 1   MAATMDFYSSSSRHNLQNDLFGGGELMEALEPFMRSASSSSTPSPSPSSLSPSSLPPLPS 60

Query: 59  TSY---NYQSYPPPLPTIASLS------NLLYPDACSTSSTHLFANGLSMNDLGLQQQQQ 109
           TSY   N  SY          S        LY + CSTS+T  F+NG  + D  +     
Sbjct: 61  TSYYNNNNDSYLSFSSLSPFSSIQDQDQTFLYSNGCSTSNTLPFSNGFLIQDQTISTSLP 120

Query: 110 HYQQGTVGLNNLNLFQIQQIQ----LQNQNFWPQQQQKSHLYPQGLNFLSPKPVPMKTVG 165
               G++GLN+L   QI QIQ    LQN  +     Q S      LNFLSPKP+PMK VG
Sbjct: 121 QPLNGSIGLNHLTPTQIHQIQTQFHLQNHTYPLHHNQNS------LNFLSPKPIPMKQVG 174

Query: 166 CPPPKPAKLYRGVRQRHWGKWVAEIRLPKNRTRLWLGTFDTAEEAALAYDKAAYKLRGDF 225
            PP KP KLYRGVRQRHWGKWVAEIRLPKNRTRLWLGTFDTAEEAALAYDKAAYKLRGDF
Sbjct: 175 SPP-KPTKLYRGVRQRHWGKWVAEIRLPKNRTRLWLGTFDTAEEAALAYDKAAYKLRGDF 233

Query: 226 ARLNFPNLRHNGSHIGGEFGEYKPLHSSVDAKLAAICENLAETQKLGTSKKEKQSNSAQK 285
           ARLNFPNLRH GSHI G+FGEYKPLHS+VDAKL AICE+LA+      S  +KQS   +K
Sbjct: 234 ARLNFPNLRHQGSHIEGKFGEYKPLHSAVDAKLQAICESLAQ------SSSQKQSGKGEK 287

Query: 286 KRHRSGNKKVDVVEGAGG-------AGVGVKNEC----------SLSDGSAGS-SPVSDL 327
              +   K  +VV+             VGV+++C          + S+GS GS SP+SDL
Sbjct: 288 NSTKKSKKTPEVVKEEAKPTQEQHEVAVGVEDKCCKVETQSPLLTESEGSGGSCSPLSDL 347

Query: 328 TCQDLTEPPSELELDAASENFMLQKYPSYEIDWASILS 365
           T  D  E P    LD  S NFML KYPSYEIDWAS+LS
Sbjct: 348 TFPDFEEAP----LDVDSSNFMLLKYPSYEIDWASLLS 381

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|118488563|gb|ABK96094.1| unknown [Populus trichocarpa]

 Score =  331 bits (848), Expect = 4e-88,   Method: Compositional matrix adjust.
 Identities = 216/374 (57%), Positives = 249/374 (66%), Gaps = 43/374 (11%)

Query: 5   MDFYSSRPVESSCDPFGGELMEALEPFMKSASASTSPSASPSSYSSSSSTLPPSTSYNYQ 64
           MDF+SS P++S     GGELMEALEPFM+SAS ST+PS S +S   SS + P ++S  + 
Sbjct: 1   MDFHSSSPLQSDLLG-GGELMEALEPFMRSASPSTTPSPSQTSNYPSSPSPPSTSSNRF- 58

Query: 65  SYPPPLPTIASLSNLLYPDAC-STSSTHLFANGLSMND-LGLQQQQQHYQQGTVGLNNLN 122
           S+ P  P     S L  PD C STS+T+ F+ GLS ND +GLQQ        ++GLN+L 
Sbjct: 59  SFSPQPPQQHQQS-LFNPDGCCSTSTTYPFSTGLSFNDPMGLQQPS-----SSIGLNHLT 112

Query: 123 LFQIQQIQLQ----NQNFWPQQQQKSHLYPQGLNFLSPKPVPMKTVGCPPPKPAKLYRGV 178
             Q+ QIQ Q    N ++    QQ     PQ L FLSPKP+PMK +G PP K  KLYRGV
Sbjct: 113 PTQVHQIQTQMHHNNLSYLQAYQQ-----PQTLKFLSPKPIPMKQIGTPP-KATKLYRGV 166

Query: 179 RQRHWGKWVAEIRLPKNRTRLWLGTFDTAEEAALAYDKAAYKLRGDFARLNFPNLRHNGS 238
           RQRHWGKWVAEIRLPKNRTRLWLGTFDTAEEAALAYD+AAYKLRGDFARLNFPNL H GS
Sbjct: 167 RQRHWGKWVAEIRLPKNRTRLWLGTFDTAEEAALAYDRAAYKLRGDFARLNFPNLLHQGS 226

Query: 239 HIGGEFGEYKPLHSSVDAKLAAICENLAET--QKLGTSKKEKQSNSAQKKRHRSGNKKVD 296
           +I    GEYKPLHSSVDAKL AIC++L  +  QK G  K ++QSNS +KK     N  V 
Sbjct: 227 YI----GEYKPLHSSVDAKLQAICKSLENSSQQKQG-GKAKRQSNSTKKK----ANLAVV 277

Query: 297 VVEGAGGAGVGVKNEC-----SLSDGSAGSSPVSDLTCQDLTEPPSELELDAASENFMLQ 351
             E      V VK E      + S  S GSSP+SDLT  D  E P    LD  S NFMLQ
Sbjct: 278 TQE---EEQVVVKAETESPALTESTASGGSSPLSDLTFPDFEEAP----LDFESGNFMLQ 330

Query: 352 KYPSYEIDWASILS 365
           KYPSYEIDWASILS
Sbjct: 331 KYPSYEIDWASILS 344

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|386646590|gb|AFJ14639.1| dehydration-responsive element-binding protein (DREB6), partial [Malus x domestica]

 Score =  322 bits (826), Expect = 1e-85,   Method: Compositional matrix adjust.
 Identities = 210/385 (54%), Positives = 244/385 (63%), Gaps = 50/385 (12%)

Query: 1   MAATMDFYSSR-PVESSCDPFGGELMEALEPFMKSASASTSPSASPSSYSSSSSTLP--- 56
           MA  MDFYS R  + SS DPF GELMEALEPFMKS S+S   S   ++ S S S+ P   
Sbjct: 1   MATAMDFYSGRSALHSSSDPFRGELMEALEPFMKSVSSSPPSSLPTTTASPSFSSAPLLP 60

Query: 57  --PSTSYNYQSYPPPLPTIASLSNLLYPDACSTSS-THLFANGLSMNDLGLQQQQQHYQQ 113
             P TSY++ S+P       +  N  Y D CSTSS T +F++G        +QQ      
Sbjct: 61  SFPFTSYDFLSFP-------NQPNF-YHDGCSTSSMTQVFSDGF------FEQQPL---- 102

Query: 114 GTVGLNNLN---------LFQIQQIQLQNQNFWPQ-QQQKSHLYPQGLNFLSPKPVPMKT 163
            ++GLN+L            Q Q    Q Q  W    QQ S    + L+FLSPKP+PMK 
Sbjct: 103 -SIGLNHLTSSQIHQIQAQIQSQSQPQQPQISWDNYHQQVSQTTSRTLSFLSPKPIPMKQ 161

Query: 164 VGCP--PPKPAKLYRGVRQRHWGKWVAEIRLPKNRTRLWLGTFDTAEEAALAYDKAAYKL 221
           VG    PPKP KLYRGVRQRHWGKWVAEIRLPKNRTRLWLGTFDTAEEAALAYD+AAYKL
Sbjct: 162 VGSAGSPPKPTKLYRGVRQRHWGKWVAEIRLPKNRTRLWLGTFDTAEEAALAYDEAAYKL 221

Query: 222 RGDFARLNFPNLRHNGSHIGGEFGEYKPLHSSVDAKLAAICENLAETQKLGTSKKEKQSN 281
           RGDFARLNFP+LRHNGS +GGEFGEYKPLH+SVDAKL AIC  LAETQK G + K  + +
Sbjct: 222 RGDFARLNFPHLRHNGSVVGGEFGEYKPLHASVDAKLQAICGGLAETQKQGKAAKPAKRS 281

Query: 282 SAQKKRHRSGNKKVDVVEGAGGAGVGVKNECSLSDGSAGSSPVSDLTCQDLTEPPSELEL 341
           SA   R  +       VE +           + S+GSAGSSP+SDLT  D TEP    E 
Sbjct: 282 SAAASRQPAPETLAVKVETSSPV-------MTDSEGSAGSSPLSDLTFGDSTEP---WEN 331

Query: 342 DAASENF-MLQKYPSYEIDWASILS 365
             ASE+  +L+KYPS EIDWASI S
Sbjct: 332 SGASESTAVLEKYPS-EIDWASIFS 355

Source: Malus x domestica

Species: Malus x domestica

Genus: Malus

Family: Rosaceae

Order: Rosales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|292668921|gb|ADE41115.1| AP2 domain class transcription factor [Malus x domestica]

 Score =  321 bits (823), Expect = 3e-85,   Method: Compositional matrix adjust.
 Identities = 209/388 (53%), Positives = 246/388 (63%), Gaps = 46/388 (11%)

Query: 1   MAATMDFYSSRPV-ESSCDPFGGELMEALEPFMKSASASTSPSASPSSYSSSSSTLPPST 59
           MA TMDFYSSR   +SS DPFGGELMEALEPFMKSAS+S  P +S      +++T PPS 
Sbjct: 1   MATTMDFYSSRAAFQSSSDPFGGELMEALEPFMKSASSSPPPPSS----LPTTATSPPSF 56

Query: 60  SYNYQSYPPPLPTIASLSNL----LYPDACSTSS-THLFANGLSMNDLGLQQQQQHYQQG 114
           +    S+P    +   LS+      Y   CSTSS T LF++GL         ++ H Q  
Sbjct: 57  APFLPSFPSSSSSYDFLSSSNQPSFYDYGCSTSSMTQLFSDGLF--------EKHHQQLP 108

Query: 115 TVGLNNLNLFQIQQIQLQNQNFW--------------PQQQQKSHLYPQGLNFLSPKPVP 160
           ++GLN+L   +  + + ++                     QQ S      L+FL PKPV 
Sbjct: 109 SIGLNHLTPPRSTKSKPRSSPNPNPNPNPNKPKSLGKTHHQQVSQPSSHTLSFLGPKPVL 168

Query: 161 MKTVGCP--PPKPAKLYRGVRQRHWGKWVAEIRLPKNRTRLWLGTFDTAEEAALAYDKAA 218
           MK VG    PPKP KLYRGVRQRHWGKWVAEIRLPKNRTRLWLGTFDTAEEAALAYDKAA
Sbjct: 169 MKQVGSSGSPPKPTKLYRGVRQRHWGKWVAEIRLPKNRTRLWLGTFDTAEEAALAYDKAA 228

Query: 219 YKLRGDFARLNFPNLRHNGSHIGGEFGEYKPLHSSVDAKLAAICENLAETQKLGTSKKEK 278
           YKLRGDFARLNFP+LRHNGS +GGEFGEYKPLH+SVDAKL AICE LAETQK G + K  
Sbjct: 229 YKLRGDFARLNFPHLRHNGSVVGGEFGEYKPLHASVDAKLQAICEGLAETQKQGKAAKPA 288

Query: 279 QSNSAQKKRHRSGNKKVDVVEGAGGAGVGVKNECSLSDGSAGSSPVSDLTCQDLTEPPSE 338
           + +SA   R  +       VE +           + S+GSAGSSP+SDLT  D TEP   
Sbjct: 289 KRSSAAASRQPAPETLAVKVETSSPV-------MTDSEGSAGSSPLSDLTFGDSTEP--- 338

Query: 339 LELDAASENF-MLQKYPSYEIDWASILS 365
            E   ASE+  +L+KYPS EIDWASI S
Sbjct: 339 WENSGASESTAVLEKYPS-EIDWASIFS 365

Source: Malus x domestica

Species: Malus x domestica

Genus: Malus

Family: Rosaceae

Order: Rosales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224063209|ref|XP_002301042.1| AP2/ERF domain-containing transcription factor [Populus trichocarpa] gi|222842768|gb|EEE80315.1| AP2/ERF domain-containing transcription factor [Populus trichocarpa]

 Score =  314 bits (804), Expect = 4e-83,   Method: Compositional matrix adjust.
 Identities = 203/352 (57%), Positives = 235/352 (66%), Gaps = 38/352 (10%)

Query: 25  MEALEPFMKSASASTSPSASPSSYSSSSSTLPPSTSYNYQSYPPPLPTIASLSNLLYPDA 84
           MEALEPFM+SAS ST+PS S +S   SS + P ++S  + S+ P  P     S L  PD 
Sbjct: 1   MEALEPFMRSASPSTTPSPSQTSNYPSSPSPPSTSSNRF-SFSPQPPQQHQQS-LFNPDG 58

Query: 85  C-STSSTHLFANGLSMND-LGLQQQQQHYQQGTVGLNNLNLFQIQQIQLQ----NQNFWP 138
           C STS+T+ F+ GLS ND +GLQQ        ++GLN+L   Q+ QIQ Q    N ++  
Sbjct: 59  CCSTSTTYPFSTGLSFNDPMGLQQPS-----SSIGLNHLTPTQVHQIQTQMHHNNLSYLQ 113

Query: 139 QQQQKSHLYPQGLNFLSPKPVPMKTVGCPPPKPAKLYRGVRQRHWGKWVAEIRLPKNRTR 198
             QQ     PQ L FLSPKP+PMK +G PP K  KLYRGVRQRHWGKWVAEIRLPKNRTR
Sbjct: 114 AYQQ-----PQTLKFLSPKPIPMKQIGTPP-KATKLYRGVRQRHWGKWVAEIRLPKNRTR 167

Query: 199 LWLGTFDTAEEAALAYDKAAYKLRGDFARLNFPNLRHNGSHIGGEFGEYKPLHSSVDAKL 258
           LWLGTFDTAEEAALAYD+AAYKLRGDFARLNFPNL H GS+I    GEYKPLHSSVDAKL
Sbjct: 168 LWLGTFDTAEEAALAYDRAAYKLRGDFARLNFPNLLHQGSYI----GEYKPLHSSVDAKL 223

Query: 259 AAICENLAET--QKLGTSKKEKQSNSAQKKRHRSGNKKVDVVEGAGGAGVGVKNE---CS 313
            AIC++L  +  QK G  K ++QSNS +KK     N  V V +      V  + E    +
Sbjct: 224 QAICKSLENSSQQKQG-GKAKRQSNSTKKK----ANLAV-VTQEEEQVVVKAETESPALT 277

Query: 314 LSDGSAGSSPVSDLTCQDLTEPPSELELDAASENFMLQKYPSYEIDWASILS 365
            S  S GSSP+SDLT  D  E P    LD  S NFMLQKYPSYEIDWASILS
Sbjct: 278 ESTASGGSSPLSDLTFPDFEEAP----LDFESGNFMLQKYPSYEIDWASILS 325

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|323650795|gb|ADX97444.1| DREB1p [Hevea brasiliensis]

 Score =  308 bits (788), Expect = 4e-81,   Method: Compositional matrix adjust.
 Identities = 175/285 (61%), Positives = 197/285 (69%), Gaps = 30/285 (10%)

Query: 97  LSMND-LGLQQQQQHYQQGTVGLNNLNLFQIQQIQ----LQNQNFWPQQQQKSHLYPQ-G 150
            SM+D  G QQ        ++GL++L   QI QIQ    LQNQN +P Q    H+  Q  
Sbjct: 1   FSMHDPTGFQQP------SSIGLSHLTPCQIHQIQTQVHLQNQNGFPFQD--YHVQNQHT 52

Query: 151 LNFLSPKPVPMKTVGCPPPKPAKLYRGVRQRHWGKWVAEIRLPKNRTRLWLGTFDTAEEA 210
           LNFL PKP+PMK VG PP KP KLYRGVRQRHWGKWVAEIRLPKNRTRLWLGTFDTAEEA
Sbjct: 53  LNFLGPKPIPMKQVGSPP-KPTKLYRGVRQRHWGKWVAEIRLPKNRTRLWLGTFDTAEEA 111

Query: 211 ALAYDKAAYKLRGDFARLNFPNLRHNGSHIGGEFGEYKPLHSSVDAKLAAICENLAETQK 270
           ALAYDKAAYKLRGDFARLNFPNLRH GSHI G+FGEYKPLHSSVDAKL AIC++LAE+QK
Sbjct: 112 ALAYDKAAYKLRGDFARLNFPNLRHQGSHIKGKFGEYKPLHSSVDAKLQAICQSLAESQK 171

Query: 271 LGTSKKEKQSNSAQKKRHRSGNKKVDVVEGAGGAGVGVKNEC----------SLSDGSAG 320
            G  K EKQSNS+  K+       V   + A        ++C          + S+GS G
Sbjct: 172 QG-GKAEKQSNSSSTKKKAQVGMTVQAAKEAEFQQKSTLDKCCKVETPSPVLTESEGSGG 230

Query: 321 SSPVSDLTCQDLTEPPSELELDAASENFMLQKYPSYEIDWASILS 365
           SSP+SDLT  D  E P    LD  S NF L+KYPSYEIDWAS+LS
Sbjct: 231 SSPLSDLTFPDFEEAP----LDVDSGNFNLEKYPSYEIDWASLLS 271

Source: Hevea brasiliensis

Species: Hevea brasiliensis

Genus: Hevea

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356515802|ref|XP_003526587.1| PREDICTED: ethylene-responsive transcription factor RAP2-4-like [Glycine max]

 Score =  304 bits (778), Expect = 5e-80,   Method: Compositional matrix adjust.
 Identities = 194/367 (52%), Positives = 220/367 (59%), Gaps = 69/367 (18%)

Query: 1   MAATMDFYSSRP-VESSCDPFGGELMEALEPFMKSASASTSPSASPSSYSSSSSTLPPST 59
           MAA MDFYSS P  +   DPF GELME LEPFMKS S +  PS+                
Sbjct: 1   MAALMDFYSSSPEFQLHSDPFRGELMEVLEPFMKSPSPNYFPSS---------------- 44

Query: 60  SYNYQSYPPPLPTIASLSNLLYPDACSTSSTHLFANGLSMNDLGLQQQQQHYQQGTVGLN 119
                   P LP                   +L++NGLS N   L    Q      VGLN
Sbjct: 45  --------PSLP-------------------NLYSNGLSSNTQSLIGFGQAQPTSLVGLN 77

Query: 120 NLNLFQIQQIQLQNQNFWPQQQQKSHLYPQGLNFLSPKPVPMKTVGCPPPKPAKLYRGVR 179
           +L   QI QIQ Q Q    Q Q +S+     L+FL PKP+PMK  G PP KP KLYRGVR
Sbjct: 78  HLTPSQISQIQAQIQIQAQQHQNRSNT----LSFLGPKPIPMKHAGMPP-KPTKLYRGVR 132

Query: 180 QRHWGKWVAEIRLPKNRTRLWLGTFDTAEEAALAYDKAAYKLRGDFARLNFPNLRHNGSH 239
           QRHWGKWVAEIRLPKNRTRLWLGTFDTAEEAALAYDKAAYKLRGDFARLNFPNLRH GS 
Sbjct: 133 QRHWGKWVAEIRLPKNRTRLWLGTFDTAEEAALAYDKAAYKLRGDFARLNFPNLRHQGSS 192

Query: 240 IGGEFGEYKPLHSSVDAKLAAICENLAETQKLGTSKKEKQSNSAQKKRHRSGNKKVDVVE 299
           +GG+FGEYKPLHS+VDAKL AICE LAE QK G ++K       +K R +   K V   E
Sbjct: 193 VGGDFGEYKPLHSAVDAKLQAICEGLAELQKQGKTEK-----PPRKSRSKLAEKVVSDKE 247

Query: 300 GAGGAGVGVKNECSL---SDGSAGSSPVSDLTCQDLTEPPSELELDAASENFMLQKYPSY 356
                     N C +   S  S GSSP+SDLT  D+    SE + +  S+N+ LQKYPSY
Sbjct: 248 N--------NNSCKVEAASWSSEGSSPLSDLTFADV----SEAQWEGDSDNYNLQKYPSY 295

Query: 357 EIDWASI 363
           EIDW S+
Sbjct: 296 EIDWDSL 302

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|336109262|gb|AEI16474.1| dehydration-responsive element binding protein [Lespedeza potaninii]

 Score =  301 bits (772), Expect = 2e-79,   Method: Compositional matrix adjust.
 Identities = 198/369 (53%), Positives = 229/369 (62%), Gaps = 57/369 (15%)

Query: 1   MAATMDFYSSRPV--ESSCDPFGGELMEALEPFMKSASASTSPSASPSSYSSSSSTLPPS 58
           MAA MDFY+S     E   DPF GELME LEPFMKS S++ S S+S SS S S S     
Sbjct: 1   MAAMMDFYNSTEFQFEHHTDPFRGELMEVLEPFMKSPSSTPSSSSSSSSSSYSPSP---- 56

Query: 59  TSYNYQSYPPPLPTIASLSNLLYPDACSTSSTHLFANGLSMNDLGLQQQQQHYQQGTVGL 118
              NY  +P  LP                   + ++N  + N +G  Q Q       +GL
Sbjct: 57  --NNY--FPSSLP-------------------NFYSN--TQNLIGFGQVQP--TSSLLGL 89

Query: 119 NNLNLFQIQQIQ----LQNQNFWPQQQQKSHLYPQGLNFLSPKPVPMKTVGCPPPKPAKL 174
           N+L   QI QIQ    +QN N               LN L PKP+PMK VG PP KP KL
Sbjct: 90  NHLTPSQISQIQAQIHVQNHNI------------NSLNLLGPKPIPMKHVGMPP-KPTKL 136

Query: 175 YRGVRQRHWGKWVAEIRLPKNRTRLWLGTFDTAEEAALAYDKAAYKLRGDFARLNFPNLR 234
           YRGVRQRHWGKWVAEIRLPKNRTRLWLGTFDTAEEAALAYDKAAYKLRGDFARLNFPNLR
Sbjct: 137 YRGVRQRHWGKWVAEIRLPKNRTRLWLGTFDTAEEAALAYDKAAYKLRGDFARLNFPNLR 196

Query: 235 HNGSHIGGEFGEYKPLHSSVDAKLAAICENLAETQKLGTSKKEKQSNSAQKKRHRSGNKK 294
           H GS +GG+FGEYKPLHSSVDAKL AICE LAE QK G ++K+     ++ K   S  +K
Sbjct: 197 HQGSSVGGDFGEYKPLHSSVDAKLQAICEGLAELQKQGKNEKKPSK-KSRSKLAPSPPEK 255

Query: 295 VDVVEGAGGAGVGVKNECSLSDGSAGSSPVSDLTCQDLTEPPSELELDAASENFMLQKYP 354
           +D  E      V      + S+GS GSSP+SDLT  D++EP    + +  SENF L KYP
Sbjct: 256 LDSSENK--VEVSSPPVTTESEGSEGSSPLSDLTFADVSEP----QWEGDSENFNLHKYP 309

Query: 355 SYEIDWASI 363
           SYEIDW S+
Sbjct: 310 SYEIDWDSL 318

Source: Lespedeza potaninii

Species: Lespedeza potaninii

Genus: Lespedeza

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	365
TAIR|locus:2029491	334	RAP2.4 "related to AP2 4" [Ara	0.564	0.616	0.549	4.2e-61
TAIR|locus:2015061	261	AT1G22190 [Arabidopsis thalian	0.463	0.647	0.529	4.7e-48
TAIR|locus:2135282	272	AT4G39780 [Arabidopsis thalian	0.509	0.683	0.439	2.2e-38
TAIR|locus:2034295	314	AT1G36060 [Arabidopsis thalian	0.468	0.544	0.442	2.4e-35
TAIR|locus:2171840	277	AT5G65130 [Arabidopsis thalian	0.290	0.382	0.508	6.4e-35
TAIR|locus:2060385	261	AT2G22200 [Arabidopsis thalian	0.536	0.750	0.404	2.3e-30
TAIR|locus:2014185	335	AT1G64380 [Arabidopsis thalian	0.520	0.567	0.343	5.9e-25
TAIR|locus:2119555	388	AT4G13620 [Arabidopsis thalian	0.178	0.167	0.646	2.3e-20
TAIR|locus:2051359	336	ERF53 "ERF domain 53" [Arabido	0.183	0.199	0.628	5.1e-19
TAIR|locus:2145477	189	SHN3 "shine3" [Arabidopsis tha	0.328	0.634	0.352	6.9e-15

TAIR|locus:2029491 RAP2.4 "related to AP2 4" [Arabidopsis thaliana (taxid:3702)]

 Score = 574 (207.1 bits), Expect = 4.2e-61, Sum P(2) = 4.2e-61
 Identities = 123/224 (54%), Positives = 137/224 (61%)

Query:   152 NFLSPKPVPMKTVG----C------PPPKPAKLYRGVRQRHWGKWVAEIRLPKNRTRLWL 201
             N LSPKP+ MK  G    C       P KP KLYRGVRQRHWGKWVAEIRLP+NRTRLWL
Sbjct:   119 NLLSPKPLLMKQSGVAGSCFAYGSGVPSKPTKLYRGVRQRHWGKWVAEIRLPRNRTRLWL 178

Query:   202 GTFDTXXXXXXXXXXXXXXXRGDFARLNFPNLRHNGSHIGGEFGEYKPLHSSVDAKLAAI 261
             GTFDT               RGDFARLNFPNLRHNGSHIGG+FGEYKPLHSSVDAKL AI
Sbjct:   179 GTFDTAEEAALAYDKAAYKLRGDFARLNFPNLRHNGSHIGGDFGEYKPLHSSVDAKLEAI 238

Query:   262 CENLAETQKLGTSKKEKQSNSAQKKRHRSGNKKXXXXXXXXXXXXXXKNECSLSDGSAGS 321
             C+++AETQK    K  K S   +KK       +                     + +AGS
Sbjct:   239 CKSMAETQK--QDKSTKSSKKREKKVSSPDLSEKVKAEENSVSIGGSPPVTEFEESTAGS 296

Query:   322 SPVSDLTCQDLTEPPSELELDAASENFMLQKYPSYEIDWASILS 365
             SP+SDLT  D  EPP        +E F L+KYPSYEIDW SIL+
Sbjct:   297 SPLSDLTFADPEEPPQW------NETFSLEKYPSYEIDWDSILA 334

GO:0003677 "DNA binding" evidence=IEA;IDA;TAS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA;ISS;IDA;TAS

GO:0005634 "nucleus" evidence=ISM;IC;IDA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA;ISS

GO:0005515 "protein binding" evidence=IPI

GO:0006970 "response to osmotic stress" evidence=IEP

GO:0071472 "cellular response to salt stress" evidence=IEP

GO:0009414 "response to water deprivation" evidence=IEP;IMP

GO:0009416 "response to light stimulus" evidence=IEP

GO:0009651 "response to salt stress" evidence=IEP

GO:0009873 "ethylene mediated signaling pathway" evidence=IMP

GO:0010017 "red or far-red light signaling pathway" evidence=IGI

GO:0009611 "response to wounding" evidence=IEP

GO:0009736 "cytokinin mediated signaling pathway" evidence=IMP

GO:0045595 "regulation of cell differentiation" evidence=IMP

GO:0009409 "response to cold" evidence=IEP

GO:0043565 "sequence-specific DNA binding" evidence=IDA

TAIR|locus:2015061 AT1G22190 [Arabidopsis thaliana (taxid:3702)]

 Score = 413 (150.4 bits), Expect = 4.7e-48, Sum P(2) = 4.7e-48
 Identities = 99/187 (52%), Positives = 109/187 (58%)

Query:   154 LSPKPVPMKTVGCPPPKPAKLYRGVRQRHWGKWVAEIRLPKNRTRLWLGTFDTXXXXXXX 213
             LSPKPV MK  G    KP KLYRGVRQRHWGKWVAEIRLP+NRTRLWLGTFDT       
Sbjct:    62 LSPKPVSMKQTGTSAAKPTKLYRGVRQRHWGKWVAEIRLPRNRTRLWLGTFDTAEEAALA 121

Query:   214 XXXXXXXXRGDFARLNFPNLRHNGSHIGGEFGEYKPLHSSVDAKLAAICENLAET-QKLG 272
                     RGDFARLNFP+LRHN         EY+PL SSVDAKL AIC+NLAET QK  
Sbjct:   122 YDKAAYKLRGDFARLNFPDLRHND--------EYQPLQSSVDAKLEAICQNLAETTQKQV 173

Query:   273 TSKKEKQSNSAQKKRHRSGNKKXXXXXXXXXXXXXXKNECSLSDGSAGSSPVSDLTCQDL 332
              S K+    S+ +KR  +   K                E   S GS  SSP+S+LT  D 
Sbjct:   174 RSTKK----SSSRKRSSTVAVKLPEEDYSSAGSSPLLTESYGSGGS--SSPLSELTFGDT 227

Query:   333 TE---PP 336
              E   PP
Sbjct:   228 EEEIQPP 234

GO:0003677 "DNA binding" evidence=IEA;TAS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=ISM;IC

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA;ISS

GO:0005515 "protein binding" evidence=IPI

GO:0006970 "response to osmotic stress" evidence=IEP

GO:0009409 "response to cold" evidence=IEP

GO:0009414 "response to water deprivation" evidence=IEP

GO:0043565 "sequence-specific DNA binding" evidence=IDA

TAIR|locus:2135282 AT4G39780 [Arabidopsis thaliana (taxid:3702)]

 Score = 373 (136.4 bits), Expect = 2.2e-38, Sum P(2) = 2.2e-38
 Identities = 94/214 (43%), Positives = 117/214 (54%)

Query:   154 LSPKPVPMKTVGCPPPKPAKLYRGVRQRHWGKWVAEIRLPKNRTRLWLGTFDTXXXXXXX 213
             L+PKPVPMK +        KLYRGVRQRHWGKWVAEIRLPKNRTRLWLGTFDT       
Sbjct:    77 LAPKPVPMKNMTAQ-----KLYRGVRQRHWGKWVAEIRLPKNRTRLWLGTFDTAEEAAMA 131

Query:   214 XXXXXXXXRGDFARLNFPNLRHNGSHIGGEFGE-YKPLHSSVDAKLAAICENLAETQKLG 272
                     RG+FARLNFP  RH   + GG  G  + PLHSSVDAKL  IC++L +T+ + 
Sbjct:   132 YDLAAYKLRGEFARLNFPQFRHEDGYYGG--GSCFNPLHSSVDAKLQEICQSLRKTEDID 189

Query:   273 TSKKEKQSNSAQKKRHRSGNKKXXXXXXXXXXXXXXKNECSLSDGS--AGSSPVSDLTC- 329
                 E +    + +   S                   +E S SD S    SSP S +T  
Sbjct:   190 LPCSETELFPPKTEYQES------------EYGFLRSDENSFSDESHVESSSPESGITTF 237

Query:   330 QDLTEPPSELELDAASENFMLQKYPSYEIDWASI 363
              D ++   + E+ +    F L+K+PS EIDW +I
Sbjct:   238 LDFSDSGFD-EIGS----FGLEKFPSVEIDWDAI 266

GO:0003677 "DNA binding" evidence=IEA;TAS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=ISM;IC

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA;ISS

TAIR|locus:2034295 AT1G36060 [Arabidopsis thaliana (taxid:3702)]

 Score = 328 (120.5 bits), Expect = 2.4e-35, Sum P(2) = 2.4e-35
 Identities = 84/190 (44%), Positives = 98/190 (51%)

Query:   151 LNFLSPKPVPMKTVGCPPP----KPAKLYRGVRQRHWGKWVAEIRLPKNRTRLWLGTFDT 206
             LNF+ P      T   P      KPAKLYRGVRQRHWGKWVAEIRLP+NRTRLWLGTFDT
Sbjct:   115 LNFIEPSQPGFMTQPGPSSGSVSKPAKLYRGVRQRHWGKWVAEIRLPRNRTRLWLGTFDT 174

Query:   207 XXXXXXXXXXXXXXXRGDFARLNFPNLRHNGSHIGGEFGEYKPLHSSVDAKLAAICENLA 266
                            RGD ARLNFP LR+       + GEY P+ ++VDAKL AI   LA
Sbjct:   175 AEEAALAYDRAAFKLRGDSARLNFPALRYQTGSSPSDTGEYGPIQAAVDAKLEAI---LA 231

Query:   267 ETQKLGTSKKEKQSNSAQKKRHRSGNKKXXXXXXXXXXXXXXKNECSLSDGSAGSSPVSD 326
             E  K    K E+ S    +KR      K               +    SDGS   SP SD
Sbjct:   232 EP-KNQPGKTERTS----RKR-----AKAAASSAEQPSAPQQHSGSGESDGSG--SPTSD 279

Query:   327 LTCQDLTEPP 336
             +  Q++ + P
Sbjct:   280 VMVQEMCQEP 289

GO:0003677 "DNA binding" evidence=IEA;TAS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=ISM;IC

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA;ISS

TAIR|locus:2171840 AT5G65130 [Arabidopsis thaliana (taxid:3702)]

 Score = 271 (100.5 bits), Expect = 6.4e-35, Sum P(3) = 6.4e-35
 Identities = 59/116 (50%), Positives = 71/116 (61%)

Query:   150 GLNFLSPKPVPMKTVGCPPPKPAKLYRGVRQRHWGKWVAEIRLPKNRTRLWLGTFDTXXX 209
             G + L+ KP  MK +     KP KLYRGVRQR WGKWVAEIRLPKNRTRLWLGTF+T   
Sbjct:    87 GSHLLTAKPTSMKKIDVAT-KPVKLYRGVRQRQWGKWVAEIRLPKNRTRLWLGTFETAQE 145

Query:   210 XXXXXXXXXXXXRGDFARLNFPNLRHNGSHIGGEFGEYKPLHS-SVDAKLAAICEN 264
                         RGD ARLNFP++   G H       YK + S S++AK+ +IC +
Sbjct:   146 AALAYDQAAHKIRGDNARLNFPDIVRQG-H-------YKQILSPSINAKIESICNS 193

GO:0003677 "DNA binding" evidence=IEA;TAS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=ISM;IC

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA;ISS

TAIR|locus:2060385 AT2G22200 [Arabidopsis thaliana (taxid:3702)]

 Score = 335 (123.0 bits), Expect = 2.3e-30, P = 2.3e-30
 Identities = 89/220 (40%), Positives = 113/220 (51%)

Query:   154 LSPKPVPMKTVGCPPPKPAKLYRGVRQRHWGKWVAEIRLPKNRTRLWLGTFDTXXXXXXX 213
             LSP  + MK +     K   LYRGVRQRHWGKWVAEIRLPKNRTRLWLGTF+T       
Sbjct:    50 LSPNRIRMKNLTPSTSKTKNLYRGVRQRHWGKWVAEIRLPKNRTRLWLGTFETAEKAALA 109

Query:   214 XXXXXXXXRGDFARLNFPNLRHNGSHIGGEFGEYKPLHSSVDAKLAAICENLAETQKL-G 272
                     RGD A+LNFPNL H          +  PL SSVD KL AIC++L +T+++  
Sbjct:   110 YDQAAFQLRGDIAKLNFPNLIHE---------DMNPLPSSVDTKLQAICKSLRKTEEICS 160

Query:   273 TSKKEKQ------SNSAQ---KKRHRSGNKKXXXXXXXXXXXXXXKNECSLSDGSAGSSP 323
              S + K+      S+  +    K      K+               +E SL D S     
Sbjct:   161 VSDQTKEYSVYSVSDKTELFLPKAELFLPKREHLETNELSNESPRSDETSLLDESQAEYS 220

Query:   324 VSDLTCQDLTEPPSELELDAASENFMLQKYPSYEIDWASI 363
              SD T  D ++  +E E +  S  F L+K+PS EIDW +I
Sbjct:   221 SSDKTFLDFSD--TEFE-EIGS--FGLRKFPSVEIDWDAI 255

GO:0003677 "DNA binding" evidence=IEA;ISS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=ISM;IC

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA;ISS

TAIR|locus:2014185 AT1G64380 [Arabidopsis thaliana (taxid:3702)]

 Score = 284 (105.0 bits), Expect = 5.9e-25, P = 5.9e-25
 Identities = 69/201 (34%), Positives = 105/201 (52%)

Query:   170 KPAKLYRGVRQRHWGKWVAEIRLPKNRTRLWLGTFDTXXXXXXXXXXXXXXXRGDFARLN 229
             K  KLYRGVRQRHWGKWVAEIRLP+NR R+WLGT+DT               RG++ARLN
Sbjct:   131 KKKKLYRGVRQRHWGKWVAEIRLPQNRMRVWLGTYDTAEAAAYAYDRAAYKLRGEYARLN 190

Query:   230 FPNLRHNGSHIG-GEFGEYKPLHSSVDAKLAAICENLAETQKLGTSKKEKQSNSAQKKRH 288
             FPNL+     +G G+  +   L ++VD K+ +IC+ + + ++   S K  +++SA     
Sbjct:   191 FPNLKDPSELLGLGDSSKLIALKNAVDGKIQSICQRVRK-ERAKKSVKVSKNSSATADSS 249

Query:   289 RSGNKKXXXXXXXXXXXXXXKNECS--LSD-GSAGSSPVSDLTCQDLTEPPSELELDAA- 344
                + +               +E S  +S  G   S   S ++    +E P+  E +A  
Sbjct:   250 CLSSPEILSSSPVTTTTTAVTSEDSYWVSPMGLCNSENSSPVSVSVPSEVPATAEEEAMM 309

Query:   345 ---SENFMLQKYPSY--EIDW 360
                ++ F+L + PS+  E+ W
Sbjct:   310 GVDTDGFLLARMPSFDPELIW 330

GO:0003677 "DNA binding" evidence=IEA;ISS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=ISM;ISS

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA;ISS

GO:0010200 "response to chitin" evidence=IEP

GO:0015824 "proline transport" evidence=RCA

TAIR|locus:2119555 AT4G13620 [Arabidopsis thaliana (taxid:3702)]

 Score = 243 (90.6 bits), Expect = 2.3e-20, P = 2.3e-20
 Identities = 42/65 (64%), Positives = 48/65 (73%)

Query:   171 PAKLYRGVRQRHWGKWVAEIRLPKNRTRLWLGTFDTXXXXXXXXXXXXXXXRGDFARLNF 230
             P KLYRGVRQRHWGKWVAEIRLP+NRTR+WLGTF+T               RG+FA LNF
Sbjct:   228 PTKLYRGVRQRHWGKWVAEIRLPRNRTRVWLGTFETAEQAAMAYDTAAYILRGEFAHLNF 287

Query:   231 PNLRH 235
             P+L+H
Sbjct:   288 PDLKH 292

GO:0003677 "DNA binding" evidence=IEA;ISS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=ISM;ISS

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA;ISS

TAIR|locus:2051359 ERF53 "ERF domain 53" [Arabidopsis thaliana (taxid:3702)]

 Score = 228 (85.3 bits), Expect = 5.1e-19, P = 5.1e-19
 Identities = 44/70 (62%), Positives = 47/70 (67%)

Query:   167 PPPKP---AKLYRGVRQRHWGKWVAEIRLPKNRTRLWLGTFDTXXXXXXXXXXXXXXXRG 223
             PP +P    KLYRGVRQRHWGKWVAEIR P+NRTRLWLGTFDT               RG
Sbjct:   176 PPVQPFSATKLYRGVRQRHWGKWVAEIRKPRNRTRLWLGTFDTAEEAAMAYDREAFKLRG 235

Query:   224 DFARLNFPNL 233
             + ARLNFP L
Sbjct:   236 ETARLNFPEL 245

GO:0003677 "DNA binding" evidence=IEA;ISS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=ISM;ISS;IDA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA;ISS

GO:0005737 "cytoplasm" evidence=IDA

GO:0009651 "response to salt stress" evidence=IEP

GO:2000070 "regulation of response to water deprivation" evidence=IEP

TAIR|locus:2145477 SHN3 "shine3" [Arabidopsis thaliana (taxid:3702)]

 Score = 189 (71.6 bits), Expect = 6.9e-15, P = 6.9e-15
 Identities = 44/125 (35%), Positives = 64/125 (51%)

Query:   172 AKLYRGVRQRHWGKWVAEIRLPKNRTRLWLGTFDTXXXXXXXXXXXXXXXRGDFARLNFP 231
             +K +RGVRQR WG WV+EIR P  + R+WLGTFDT                G  A+ NFP
Sbjct:     4 SKKFRGVRQRQWGSWVSEIRHPLLKRRVWLGTFDTAETAARAYDQAAVLMNGQSAKTNFP 63

Query:   232 NLRHNGSH---IGGEFGEYKPLHSSVDAKLAAICENLAETQKLGTSKKEKQSNSAQKKRH 288
              ++ NGS+   I       K L   ++AKL   C++  +T  L   + +  S+     + 
Sbjct:    64 VIKSNGSNSLEINSALRSPKSLSELLNAKLRKNCKD--QTPYLTCLRLDNDSSHIGVWQK 121

Query:   289 RSGNK 293
             R+G+K
Sbjct:   122 RAGSK 126

GO:0003677 "DNA binding" evidence=IEA;ISS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA;ISS;IDA

GO:0005634 "nucleus" evidence=ISM;ISS

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA;ISS

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q8H1E4	RAP24_ARATH	No assigned EC number	0.5078	0.8739	0.9550	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	365
smart00380	64	smart00380, AP2, DNA-binding domain in plant prote	4e-36
cd00018	61	cd00018, AP2, DNA-binding domain found in transcri	5e-34
pfam00847	53	pfam00847, AP2, AP2 domain	2e-17

>gnl|CDD|197689 smart00380, AP2, DNA-binding domain in plant proteins such as APETALA2 and EREBPs

 Score =  125 bits (315), Expect = 4e-36
 Identities = 45/63 (71%), Positives = 50/63 (79%)

Query: 175 YRGVRQRHWGKWVAEIRLPKNRTRLWLGTFDTAEEAALAYDKAAYKLRGDFARLNFPNLR 234
           YRGVRQR WGKWVAEIR P    R+WLGTFDTAEEAA AYD+AA+K RG  ARLNFPN  
Sbjct: 2   YRGVRQRPWGKWVAEIRDPSKGKRVWLGTFDTAEEAARAYDRAAFKFRGRSARLNFPNSL 61

Query: 235 HNG 237
           ++ 
Sbjct: 62  YDS 64

Length = 64

>gnl|CDD|237985 cd00018, AP2, DNA-binding domain found in transcription regulators in plants such as APETALA2 and EREBP (ethylene responsive element binding protein)

 Score =  119 bits (301), Expect = 5e-34
 Identities = 44/61 (72%), Positives = 47/61 (77%)

Query: 173 KLYRGVRQRHWGKWVAEIRLPKNRTRLWLGTFDTAEEAALAYDKAAYKLRGDFARLNFPN 232
             YRGVRQR WGKWVAEIR P    R+WLGTFDTAEEAA AYD+AA KLRG  A LNFP+
Sbjct: 1   SKYRGVRQRPWGKWVAEIRDPSGGRRIWLGTFDTAEEAARAYDRAALKLRGSSAVLNFPD 60

Query: 233 L 233
            
Sbjct: 61  S 61

In EREBPs the domain specifically binds to the 11bp GCC box of the ethylene response element (ERE), a promotor element essential for ethylene responsiveness. EREBPs and the C-repeat binding factor CBF1, which is involved in stress response, contain a single copy of the AP2 domain. APETALA2-like proteins, which play a role in plant development contain two copies. Length = 61

>gnl|CDD|216148 pfam00847, AP2, AP2 domain

 Score = 75.0 bits (185), Expect = 2e-17
 Identities = 29/52 (55%), Positives = 32/52 (61%), Gaps = 4/52 (7%)

Query: 175 YRGVRQRH-WGKWVAEIRLPKNR--TRLWLGTFDTAEEAALAYDKAAYKLRG 223
           Y+GVR    WG+WVAEIR P  +   R  LGTF T EEAA A   A  KLRG
Sbjct: 3   YKGVRYDKRWGRWVAEIRDPGEKKKKRFSLGTFGT-EEAARAAIAARLKLRG 53

This 60 amino acid residue domain can bind to DNA and is found in transcription factor proteins. Length = 53

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	365
cd00018	61	AP2 DNA-binding domain found in transcription regu	99.81
smart00380	64	AP2 DNA-binding domain in plant proteins such as A	99.81
PHA00280	121	putative NHN endonuclease	99.54
PF00847	56	AP2: AP2 domain; InterPro: IPR001471 Pathogenesis-	99.13
PF14657	46	Integrase_AP2: AP2-like DNA-binding integrase doma	80.27

>cd00018 AP2 DNA-binding domain found in transcription regulators in plants such as APETALA2 and EREBP (ethylene responsive element binding protein)

Probab=99.81  E-value=5.3e-20  Score=138.75  Aligned_cols=61  Identities=72%  Similarity=1.165  Sum_probs=56.8

Q ss_pred             CCceeeEECCCCcEEEEEeecCCCeEeecCCCCCHHHHHHHHHHHHHHHhCCCCCCCCCCC
Q 017798          173 KLYRGVRQRHWGKWVAEIRLPKNRTRLWLGTFDTAEEAALAYDKAAYKLRGDFARLNFPNL  233 (365)
Q Consensus       173 SgYRGVr~r~~GKW~AeIr~p~~gKriyLGtFdTaEEAArAYD~AA~klrG~~A~lNFP~~  233 (365)
                      |+||||+++++|||+|+|+++..|+++|||+|+|+||||+|||+|+++++|.++++|||.+
T Consensus         1 s~~~GV~~~~~gkw~A~I~~~~~gk~~~lG~f~t~eeAa~Ayd~a~~~~~g~~a~~Nf~~~   61 (61)
T cd00018           1 SKYRGVRQRPWGKWVAEIRDPSGGRRIWLGTFDTAEEAARAYDRAALKLRGSSAVLNFPDS   61 (61)
T ss_pred             CCccCEEECCCCcEEEEEEeCCCCceEccCCCCCHHHHHHHHHHHHHHhcCCccccCCCCC
Confidence            6899998878899999999955599999999999999999999999999999999999963

In EREBPs the domain specifically binds to the 11bp GCC box of the ethylene response element (ERE), a promotor element essential for ethylene responsiveness. EREBPs and the C-repeat binding factor CBF1, which is involved in stress response, contain a single copy of the AP2 domain. APETALA2-like proteins, which play a role in plant development contain two copies.

>smart00380 AP2 DNA-binding domain in plant proteins such as APETALA2 and EREBPs

Probab=99.81  E-value=8.8e-20  Score=139.37  Aligned_cols=63  Identities=71%  Similarity=1.170  Sum_probs=60.0

Q ss_pred             CceeeEECCCCcEEEEEeecCCCeEeecCCCCCHHHHHHHHHHHHHHHhCCCCCCCCCCCCCC
Q 017798          174 LYRGVRQRHWGKWVAEIRLPKNRTRLWLGTFDTAEEAALAYDKAAYKLRGDFARLNFPNLRHN  236 (365)
Q Consensus       174 gYRGVr~r~~GKW~AeIr~p~~gKriyLGtFdTaEEAArAYD~AA~klrG~~A~lNFP~~~~~  236 (365)
                      +|+||+++++|||+|+|+++.+|+++|||+|+|+||||+|||.|+++++|.++++|||...|+
T Consensus         1 ~~kGV~~~~~gkw~A~I~~~~~~k~~~lG~f~t~eeAa~Ayd~a~~~~~g~~a~~Nf~~~~y~   63 (64)
T smart00380        1 KYRGVRQRPWGKWVAEIRDPSKGKRVWLGTFDTAEEAARAYDRAAFKFRGRSARLNFPNSLYD   63 (64)
T ss_pred             CEeeEEeCCCCeEEEEEEecCCCcEEecCCCCCHHHHHHHHHHHHHHhcCCccccCCCCccCC
Confidence            589998788999999999999999999999999999999999999999999999999998775

>PHA00280 putative NHN endonuclease

Probab=99.54  E-value=8.3e-15  Score=126.55  Aligned_cols=71  Identities=18%  Similarity=0.262  Sum_probs=62.3

Q ss_pred             CCCCCCCCCCCCCCCCCCCCCceee-EECCCCcEEEEEeecCCCeEeecCCCCCHHHHHHHHHHHHHHHhCCCCCC
Q 017798          154 LSPKPVPMKTVGCPPPKPAKLYRGV-RQRHWGKWVAEIRLPKNRTRLWLGTFDTAEEAALAYDKAAYKLRGDFARL  228 (365)
Q Consensus       154 l~pk~~~mK~~g~~~~~ntSgYRGV-r~r~~GKW~AeIr~p~~gKriyLGtFdTaEEAArAYD~AA~klrG~~A~l  228 (365)
                      +.+..+.++|.+.. ++|+|||+|| +++..|||+|+|++  +||+++||.|+++|+|+.||+ ++.+|||+||+.
T Consensus        49 ~~T~~eN~~N~~~~-~~N~SG~kGV~~~k~~~kw~A~I~~--~gK~~~lG~f~~~e~A~~a~~-~~~~lhGeFa~~  120 (121)
T PHA00280         49 LALPKENSWNMKTP-KSNTSGLKGLSWSKEREMWRGTVTA--EGKQHNFRSRDLLEVVAWIYR-TRRELHGQFARF  120 (121)
T ss_pred             hcCHHHHhcccCCC-CCCCCCCCeeEEecCCCeEEEEEEE--CCEEEEcCCCCCHHHHHHHHH-HHHHHhhccccC
Confidence            44555677887776 8899999999 68888999999998  999999999999999999997 778999999853

>PF00847 AP2: AP2 domain; InterPro: IPR001471 Pathogenesis-related genes transcriptional activator binds to the GCC-box pathogenesis-related promoter element and activates the plant's defence genes

Probab=99.13  E-value=1.3e-10  Score=85.63  Aligned_cols=52  Identities=38%  Similarity=0.597  Sum_probs=45.7

Q ss_pred             CCceee-EECCCCcEEEEEeecC-C--CeEeecCCCCCHHHHHHHHHHHHHHHhCC
Q 017798          173 KLYRGV-RQRHWGKWVAEIRLPK-N--RTRLWLGTFDTAEEAALAYDKAAYKLRGD  224 (365)
Q Consensus       173 SgYRGV-r~r~~GKW~AeIr~p~-~--gKriyLGtFdTaEEAArAYD~AA~klrG~  224 (365)
                      |+|+|| +++..++|+|+|+++. +  +++++||.|++++||++|++.++++++|+
T Consensus         1 s~~~GV~~~~~~~~W~a~i~~~~~~g~~k~f~~g~fg~~~eA~~~a~~~r~~~~~e   56 (56)
T PF00847_consen    1 SGYKGVSWDKRRGRWRAQIRVWSENGKRKRFSVGKFGFEEEAKRAAIEARKELEGE   56 (56)
T ss_dssp             SSSTTEEEETTTTEEEEEEEECCCTTEEEEEEECCCCCHHHHHHHHHHHHHHCTS-
T ss_pred             CCcEEEEEcCCCCEEEEEEEEcccCcccEEEeCccCCCHHHHHHHHHHHHHHhcCC
Confidence            689999 5788899999999842 2  49999999999999999999999999875

Ethylene, chemically the simplest plant hormone, participates in a number of stress responses and developmental processes: e.g., fruit ripening, inhibition of stem and root elongation, promotion of seed germination and flowering, senescence of leaves and flowers, and sex determination []. DNA sequence elements that confer ethylene responsiveness have been shown to contain two 11bp GCC boxes, which are necessary and sufficient for transcriptional control by ethylene. Ethylene responsive element binding proteins (EREBPs) have now been identified in a variety of plants. The proteins share a similar domain of around 59 amino acids, which interacts directly with the GCC box in the ERE.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent; PDB: 3IGM_A 3GCC_A 1GCC_A 2GCC_A.

>PF14657 Integrase_AP2: AP2-like DNA-binding integrase domain

Probab=80.27  E-value=7.9  Score=27.85  Aligned_cols=38  Identities=21%  Similarity=0.205  Sum_probs=29.9

Q ss_pred             cEEEEEe--ecCCC--eEeecCCCCCHHHHHHHHHHHHHHHh
Q 017798          185 KWVAEIR--LPKNR--TRLWLGTFDTAEEAALAYDKAAYKLR  222 (365)
Q Consensus       185 KW~AeIr--~p~~g--KriyLGtFdTaEEAArAYD~AA~klr  222 (365)
                      +|...|.  .+.+|  ++++-+.|.|..||..+...+...+.
T Consensus         1 ~w~~~v~g~~~~~Gkrk~~~k~GF~TkkeA~~~~~~~~~~~~   42 (46)
T PF14657_consen    1 TWYYRVYGYDDETGKRKQKTKRGFKTKKEAEKALAKIEAELE   42 (46)
T ss_pred             CEEEEEEEEECCCCCEEEEEcCCCCcHHHHHHHHHHHHHHHH
Confidence            6888883  44355  66888999999999999988777664

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	365
1gcc_A	63	Solution Nmr Structure Of The Complex Of Gcc-Box Bi		8e-10
2gcc_A	70	Solution Structure Of The Gcc-Box Binding Domain, N		1e-09

>pdb|1GCC|A Chain A, Solution Nmr Structure Of The Complex Of Gcc-Box Binding Domain Of Aterf1 And Gcc-Box Dna, Minimized Average Structure Length = 63

Iteration: 1
 Score = 61.2 bits (147), Expect = 8e-10,   Method: Composition-based stats.
 Identities = 32/60 (53%), Positives = 35/60 (58%), Gaps = 1/60 (1%)
Query: 173 KLYRGVRQRHWGKWVAEIRLP-KNRTRLWLGTFDTXXXXXXXXXXXXXXXRGDFARLNFP 231
           K YRGVRQR WGK+ AEIR P KN  R+WLGTF+T               RG  A LNFP
Sbjct: 1   KHYRGVRQRPWGKFAAEIRDPAKNGARVWLGTFETAEDAALAYDRAAFRMRGSRALLNFP 60

>pdb|2GCC|A Chain A, Solution Structure Of The Gcc-Box Binding Domain, Nmr, Minimized Mean Structure Length = 70

Iteration: 1
 Score = 60.8 bits (146), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 35/66 (53%), Positives = 38/66 (57%), Gaps = 2/66 (3%)
Query: 172 AKLYRGVRQRHWGKWVAEIRLP-KNRTRLWLGTFDTXXXXXXXXXXXXXXXRGDFARLNF 230
            K YRGVRQR WGK+ AEIR P KN  R+WLGTF+T               RG  A LNF
Sbjct: 3   GKHYRGVRQRPWGKFAAEIRDPAKNGARVWLGTFETAEDAALAYDRAAFRMRGSRALLNF 62
Query: 231 PNLRHN 236
           P LR N
Sbjct: 63  P-LRVN 67
  Database: pdbaa

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	365
1gcc_A	63	Ethylene responsive element binding factor 1; tran	7e-38
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	5e-05

>1gcc_A Ethylene responsive element binding factor 1; transcription factor, protein-DNA complex, ethylene inducible; HET: DNA; NMR {Arabidopsis thaliana} SCOP: d.10.1.2 PDB: 2gcc_A 3gcc_A Length = 63

 Score =  129 bits (326), Expect = 7e-38
 Identities = 42/61 (68%), Positives = 50/61 (81%), Gaps = 1/61 (1%)

Query: 173 KLYRGVRQRHWGKWVAEIRLP-KNRTRLWLGTFDTAEEAALAYDKAAYKLRGDFARLNFP 231
           K YRGVRQR WGK+ AEIR P KN  R+WLGTF+TAE+AALAYD+AA+++RG  A LNFP
Sbjct: 1   KHYRGVRQRPWGKFAAEIRDPAKNGARVWLGTFETAEDAALAYDRAAFRMRGSRALLNFP 60

Query: 232 N 232
            
Sbjct: 61  L 61

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 44.5 bits (104), Expect = 5e-05
 Identities = 47/320 (14%), Positives = 80/320 (25%), Gaps = 83/320 (25%)

Query: 14  ESSCDPFGGELMEALEPFMKSA--SASTSPSASPSSYSSSSSTL----PPSTSYNYQSYP 67
           E     F  E++     F+ S   +    PS     Y      L         YN     
Sbjct: 76  EEMVQKFVEEVLRINYKFLMSPIKTEQRQPSMMTRMYIEQRDRLYNDNQVFAKYNVSRLQ 135

Query: 68  PPLPTIASLSNL------------------LYPDACSTSSTHL-FANG---LSMN----- 100
           P L    +L  L                  +  D C +             L++      
Sbjct: 136 PYLKLRQALLELRPAKNVLIDGVLGSGKTWVALDVCLSYKVQCKMDFKIFWLNLKNCNSP 195

Query: 101 DLGLQQQQQHYQQGTVGLNNLNLFQIQQIQLQNQ-NFWPQQQQKSHLYPQGLNFL----S 155
           +  L+  Q+   Q      + +          +      ++  KS  Y   L  L    +
Sbjct: 196 ETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVLLNVQN 255

Query: 156 PKPVPMKTVGCPPPKPAKL-----YRGVRQRHWGKWVAEIRLPKNRTRL----------- 199
            K      + C      K+     ++ V           I L  +   L           
Sbjct: 256 AKAWNAFNLSC------KILLTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLK 309

Query: 200 WLGT--FDTAEEAA----LAYDKAAYKLRGDFARLNFPNLRHNGSHIGGEFGEYKPLHSS 253
           +L     D   E            A  +R   A  +  N +H              L + 
Sbjct: 310 YLDCRPQDLPREVLTTNPRRLSIIAESIRDGLATWD--NWKHV---------NCDKLTTI 358

Query: 254 VDAKLAAICENL--AETQKL 271
           +++ L      L  AE +K+
Sbjct: 359 IESSL----NVLEPAEYRKM 374

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	365
1gcc_A	63	Ethylene responsive element binding factor 1; tran	99.89
3igm_B	77	PF14_0633 protein; AP2 domain, specific transcript	91.06

>1gcc_A Ethylene responsive element binding factor 1; transcription factor, protein-DNA complex, ethylene inducible; HET: DNA; NMR {Arabidopsis thaliana} SCOP: d.10.1.2 PDB: 2gcc_A 3gcc_A

Probab=99.89  E-value=9.6e-24  Score=161.52  Aligned_cols=60  Identities=67%  Similarity=1.127  Sum_probs=56.9

Q ss_pred             CceeeEECCCCcEEEEEeecC-CCeEeecCCCCCHHHHHHHHHHHHHHHhCCCCCCCCCCC
Q 017798          174 LYRGVRQRHWGKWVAEIRLPK-NRTRLWLGTFDTAEEAALAYDKAAYKLRGDFARLNFPNL  233 (365)
Q Consensus       174 gYRGVr~r~~GKW~AeIr~p~-~gKriyLGtFdTaEEAArAYD~AA~klrG~~A~lNFP~~  233 (365)
                      +||||++++||||+|+|++|. +|+++|||+|+|+||||+|||.|+++++|..+.+|||.+
T Consensus         2 ~yrGV~~r~~gkw~A~I~~~~~~g~r~~LGtf~T~eeAA~AyD~Aa~~~~G~~a~~NFp~~   62 (63)
T 1gcc_A            2 HYRGVRQRPWGKFAAEIRDPAKNGARVWLGTFETAEDAALAYDRAAFRMRGSRALLNFPLR   62 (63)
T ss_dssp             CCTTEEEETTTEEEEEEEETTTTSEEEEEEEESSHHHHHHHHHHHHHHHHSSCCCCSSCTT
T ss_pred             CcccEeeCCCCcEEEEEccccCCCeEEEeeeCCCHHHHHHHHHHHHHHhcCcccccCCCCc
Confidence            799998888999999999986 589999999999999999999999999999999999975

>3igm_B PF14_0633 protein; AP2 domain, specific transcription FA protein-DNA complex, transcription-DNA complex; 2.20A {Plasmodium falciparum}

Probab=91.06  E-value=0.18  Score=40.16  Aligned_cols=29  Identities=21%  Similarity=0.244  Sum_probs=23.8

Q ss_pred             CCCCCceee-EECCCCcEEEEEeecCCCeEee
Q 017798          170 KPAKLYRGV-RQRHWGKWVAEIRLPKNRTRLW  200 (365)
Q Consensus       170 ~ntSgYRGV-r~r~~GKW~AeIr~p~~gKriy  200 (365)
                      ..+|+|.|| +.++.+.|+|.-..  +|++..
T Consensus         3 ~~~Sg~pGVsw~kR~~~WlA~W~e--~g~rrs   32 (77)
T 3igm_B            3 HMSSGYPGVSWNKRMCAWLAFFYD--GASRRS   32 (77)
T ss_dssp             -CCSSSTTEEEETTTTEEEEEEEE--TTEEEE
T ss_pred             CCCCCCCcEEeecCCceEEEEEec--CCeEee
Confidence            468999999 78899999999887  676653

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	365
d1gcca_	63	d.10.1.2 (A:) GCC-box binding domain {Mouse-ear cr	6e-34

>d1gcca_ d.10.1.2 (A:) GCC-box binding domain {Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]} Length = 63

class: Alpha and beta proteins (a+b)
fold: DNA-binding domain
superfamily: DNA-binding domain
family: GCC-box binding domain
domain: GCC-box binding domain
species: Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]

 Score =  117 bits (296), Expect = 6e-34
 Identities = 42/60 (70%), Positives = 50/60 (83%), Gaps = 1/60 (1%)

Query: 173 KLYRGVRQRHWGKWVAEIRLP-KNRTRLWLGTFDTAEEAALAYDKAAYKLRGDFARLNFP 231
           K YRGVRQR WGK+ AEIR P KN  R+WLGTF+TAE+AALAYD+AA+++RG  A LNFP
Sbjct: 1   KHYRGVRQRPWGKFAAEIRDPAKNGARVWLGTFETAEDAALAYDRAAFRMRGSRALLNFP 60

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	365
d1gcca_	63	GCC-box binding domain {Mouse-ear cress (Arabidops	99.88

>d1gcca_ d.10.1.2 (A:) GCC-box binding domain {Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a+b)
fold: DNA-binding domain
superfamily: DNA-binding domain
family: GCC-box binding domain
domain: GCC-box binding domain
species: Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=99.88  E-value=1.4e-23  Score=159.54  Aligned_cols=59  Identities=69%  Similarity=1.179  Sum_probs=55.6

Q ss_pred             CceeeEECCCCcEEEEEeec-CCCeEeecCCCCCHHHHHHHHHHHHHHHhCCCCCCCCCC
Q 017798          174 LYRGVRQRHWGKWVAEIRLP-KNRTRLWLGTFDTAEEAALAYDKAAYKLRGDFARLNFPN  232 (365)
Q Consensus       174 gYRGVr~r~~GKW~AeIr~p-~~gKriyLGtFdTaEEAArAYD~AA~klrG~~A~lNFP~  232 (365)
                      .||||+++++|||+|+|+++ .+++++|||+|+|+||||+|||+|+++++|.++.+|||.
T Consensus         2 ~yrGVr~r~~gkw~A~Ir~~~~~~~r~~LGtf~t~eeAArAYD~aa~~~~G~~a~~NFP~   61 (63)
T d1gcca_           2 HYRGVRQRPWGKFAAEIRDPAKNGARVWLGTFETAEDAALAYDRAAFRMRGSRALLNFPL   61 (63)
T ss_dssp             CCTTEEEETTTEEEEEEEETTTTSEEEEEEEESSHHHHHHHHHHHHHHHHSSCCCCSSCT
T ss_pred             CcceEeECCCCCEEEEEecCCCCCcEeccccccCHHHHHHHHHHHHHHhcCCCcccCCCc
Confidence            59999888899999999986 467899999999999999999999999999999999996