Citrus Sinensis ID: 017799

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-----
Protein Sequence
MEARPLSIQRSSARQLNNLGVSGPMSSSLSVLPTPLEDTYSKLPNSQQVYMEQELRTRPLAPAPHIPANSGVVGHIFSSSSGLSSDLQYSSASPHEKLPRTTSFISQSSTPIPQTSHSGLPQSSTSSHYTKESSSSWCPESLPGYVDFAANTPVQNSQMEGSSCSGAIVSEEFSKRNDWHEWADQLITDDDPLGSSWNEILADTSMTEMEPKMSYQVPKTPTSMPAHRTQVHQQLPASSTEIRTVVTPSASANNAPAKPRMRWTPELHEAFVEAVNQLGGSERATPKGVLKLMKVEGLTIYHVKSHLQKYRTARYRPDSSEGSSEKRLTPLEEISSLDLKTGIEITEALRLQMEVQKRLHEQLEV
Secondary Structure (PSIPRED)
ccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHccccccccccccHHccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHccccccccHHHHHHcccccccHHHHHHHHHHHHHHcccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHccc
Secondary Structure Prediction (SSPRO)
cccccccccccccHHcccccccccccccccccccccHccccccccccccccHHHccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHccccHHHHHHHHccccccccccHHHHHcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHcccccccccHHHHHHcccccEEEEEHHHHHHHHHHHcccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHcc
Coil and Loop (DISEMBL)
mearplsiqrSSARQlnnlgvsgpmssslsvlptpledtysklpnsqqvymeqelrtrplapaphipansgvvghifssssglssdlqyssaspheklprttsfisqsstpipqtshsglpqsstsshytkesssswcpeslpgyvdfaantpvqnsqmegsscsgaivseefskrndwhewadqlitdddplgsswneILADtsmtemepkmsyqvpktptsmpahrtqvhqqlpassteirtvvtpsasannapakprmrwtpELHEAFVEAVNQlggseratpkGVLKLMKVEGLTIYHVKSHLQKYrtaryrpdssegssekrltpleeissldLKTGIEITEALRLQMEVQKRLHEQLEV
Flexible Loop (DISEMBL)
mearplsiqrssARQLNNLGVSGPMSSSLSVLPTPLEDTYSKLPNSQQVYMEQELRTRPLAPAPHIPANSGVVGHIFSSSSGLSSDLQYSSASPHEKLPRTTSFISQSSTPIPQTSHSGLPQSSTSSHYTKESSSSWCPESLPGYVDFAANTPVQNSQMEGSSCSGAIVSEEFSKRNDWHEWADQlitdddplgssWNEILADTSMTEMEPKMSYQVPKTPTSMPAHRTQVHqqlpassteirtvvtpsasannapakprMRWTPELHEAFVEAVNqlggseratpkGVLKLMKVEGLTIYHVkshlqkyrtaryrpdssegssekrltpleeissldlkTGIEITEALRLQMEVQKRLHEQLEV
Low Complexity Region (SEG)
MEARPLSIQRSSARQLNNLGVSGPMSSSLSVLPTPLEDTYSKLPNSQQVYMEQELRTRPLAPAPHIPANSGVVGHIFssssglssdlqyssasPHEKLPRTTSFISQSSTPIPQTSHSGLPQsstsshytkessssWCPESLPGYVDFAANTPVQNSQMEGSSCSGAIVSEEFSKRNDWHEWADQLITDDDPLGSSWNEILADTSMTEMEPKMSYQVPKTPTSMPAHRTQVHQQLPASSTEIRTVVTpsasannapaKPRMRWTPELHEAFVEAVNQLGGSERATPKGVLKLMKVEGLTIYHVKSHLQKYRTARYRPDSSEGSSEKRLTPLEEISSLDLKTGIEITEALRLQMEVQKRLHEQLEV
Disordered region (IsUnstruct)
*******************************************************************************************************************************************************************************RNDWHEWADQLITDDD*L***WN********************************************************************LHEAFVEAVNQLG*****TPKGVLKLMKVEGLTIYHVKSHLQKYR******************************GIEITEA*****************
Disordered Region (DISOPRED)
************************************************************************************************************************************************YVD******************************DWHEWAD******************************************************************************WTPELHEAFVEAVNQLGGSERATPKGVLKLMKVEGLTIYHVKSHLQKY*************************************ALRLQMEVQKRLHEQLEV
Disordered Region (DISEMBL)
*********RSSARQLNNLGVSGPMSSSLSVLPTPLEDTYSKLPNSQQVYMEQELRTRPLAPAPHIPANSGVVGHIFSS***********************************************************PESLPGYVDFAANTPVQ*********SGAIVSEEFSKRNDWHEWADQLITDDDPLGSSWNEILADTSMTEMEPKMSYQVPKTPTSMPAHRTQVHQQLPASSTEIRTVVTPSA*********RMRWTPELHEAFVEAVNQLGGSERATPKGVLKLMKVEGLTIYHVKSHLQK*****************RLTPLEEISSLDLKTGIEITEALRLQMEVQKRLHEQLEV
Disordered Region (DISPRO)
******************************VLPTPL*DTYSKLPNSQQVYM**********************************************************************************SSSWCPESLPGYVDFAANTPVQNSQMEGSSCSGAIVSEEFSKRNDWHEWADQLITDDDPLGSSWNEILADT******************************************************PRMRWTPELHEAFVEAVNQLGGSERATPKGVLKLMKVEGLTIYHVKSHLQKYRTARYR*************************GIEITEALRLQMEVQKRLHEQLEV
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (MEMSAT)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
SSSSSSSSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhoooo
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MEARPLSIQRSSARQLNNLGVSGPMSSSLSVLPTPLEDTYSKLPNSQQVYMEQELRTRPLAPAPHIPANSGVVGHIFSSSSGLSSDLQYSSASPHEKLPRTTSFISQSSTPIPQTSHSGLPQSSTSSHYTKESSSSWCPESLPGYVDFAANTPVQNSQMEGSSCSGAIVSEEFSKRNDWHEWADQLITDDDPLGSSWNEILADTSMTEMEPKMSYQVPKTPTSMPAHRTQVHQQLPASSTEIRTVVTPSASANNAPAKPRMRWTPELHEAFVEAVNQLGGSERATPKGVLKLMKVEGLTIYHVKSHLQKYRTARYRPDSSEGSSEKRLTPLEEISSLDLKTGIEITEALRLQMEVQKRLHEQLEV
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	365	2.2.26 [Sep-21-2011]
Q8GUN5	413	Protein PHR1-LIKE 1 OS=Ar	no	no	0.901	0.796	0.464	2e-67
Q9SAK5	358	Myb family transcription	no	no	0.287	0.293	0.491	8e-23
Q700D9	255	Putative Myb family trans	no	no	0.153	0.219	0.696	8e-17
Q93WJ9	403	Transcription repressor K	no	no	0.238	0.215	0.522	2e-16
Q941I2	322	Probable transcription fa	no	no	0.213	0.242	0.55	2e-16
Q9C616	388	Probable transcription fa	no	no	0.235	0.221	0.5	6e-16
Q9FJV5	276	Probable transcription fa	no	no	0.186	0.246	0.614	1e-15
Q0J235	532	Probable transcription fa	no	no	0.183	0.125	0.594	3e-15
Q940D0	690	Two-component response re	no	no	0.158	0.084	0.593	2e-11
Q9FFH0	386	Transcription activator G	no	no	0.167	0.158	0.516	3e-11

>sp|Q8GUN5|PHL1_ARATH Protein PHR1-LIKE 1 OS=Arabidopsis thaliana GN=PHL1 PE=1 SV=1

 Score =  256 bits (654), Expect = 2e-67,   Method: Compositional matrix adjust.
 Identities = 166/357 (46%), Positives = 221/357 (61%), Gaps = 28/357 (7%)

Query: 17  NNLGVSGPMSSSLSVLPTPLEDTYSKLPNSQQVYMEQELRTRPLAPAPHIPANSGVVGHI 76
           N+ G S  MSSS S L T +ED Y KLPNS  V   QEL   P+        NSG  G++
Sbjct: 5   NDFGYSTAMSSSYSALHTSVEDRYHKLPNSFWVSSGQELMNNPVPCQSVSGGNSG--GYL 62

Query: 77  FSSSSGLSSDLQYSSASPHEKLPRTTSFISQSSTPIPQTSHSGLP---QSSTSSHYTKES 133
           F SSSG  +    S+  PH +  +    +S  + P  + +    P   QSS  +H+ +E 
Sbjct: 63  FPSSSGYCN---VSAVLPHGRNLQNQPPVS--TVPRDRLAMQDCPLIAQSSLINHHPQE- 116

Query: 134 SSSWCPESLPGYVDFAANTPVQNSQMEGSSCSGAIV--SEEFSKRNDWHEWADQLITDDD 191
                 + L  + DF+ + PVQN Q E S   G  V  S E  K+++W +WADQLI+ DD
Sbjct: 117 ----FIDPLHEFFDFSDHVPVQNLQAESS---GVRVDSSVELHKKSEWQDWADQLISVDD 169

Query: 192 PLGSSWNEILADTSMTEMEPKMSYQVPKTPTSMPAHRTQVHQQLPASSTEIRTVVTPSAS 251
               +W+E+L D+S     P  + ++P     +P      +QQ    S+E + +   ++S
Sbjct: 170 GSEPNWSELLGDSS--SHNP--NSEIPTPFLDVPRLDITANQQQQMVSSEDQ-LSGRNSS 224

Query: 252 ANNAPAKPRMRWTPELHEAFVEAVNQLGGSERATPKGVLKLMKVEGLTIYHVKSHLQKYR 311
           ++ A +K RMRWTPELHEAFVEAVNQLGGSERATPK VLKL+   GLTIYHVKSHLQKYR
Sbjct: 225 SSVATSKQRMRWTPELHEAFVEAVNQLGGSERATPKAVLKLLNNPGLTIYHVKSHLQKYR 284

Query: 312 TARYRPDSSEGSS---EKRLTPLEEISSLDLKTGIEITEALRLQMEVQKRLHEQLEV 365
           TARY+P++SE +    EK++T +E+I SLD+KT +EIT+ALRLQMEVQKRLHEQLE+
Sbjct: 285 TARYKPETSEVTGEPQEKKMTSIEDIKSLDMKTSVEITQALRLQMEVQKRLHEQLEI 341

Transcription factor acting as central integrator of phosphate starvation responses.
Arabidopsis thaliana (taxid: 3702)

>sp|Q9SAK5|APL_ARATH Myb family transcription factor APL OS=Arabidopsis thaliana GN=APL PE=2 SV=2

 Score =  108 bits (269), Expect = 8e-23,   Method: Compositional matrix adjust.
 Identities = 56/114 (49%), Positives = 77/114 (67%), Gaps = 9/114 (7%)

Query: 258 KPRMRWTPELHEAFVEAVNQLGGSERATPKGVLKLMKVEGLTIYHVKSHLQKYRTAR--- 314
           KPR+RWT ELHE FV+AV QLGG ++ATPK ++++M V+GLT+YH+KSHLQK+R  +   
Sbjct: 34  KPRLRWTVELHERFVDAVAQLGGPDKATPKTIMRVMGVKGLTLYHLKSHLQKFRLGKQPH 93

Query: 315 --YRPDSS-EGSSEKRLTPLEEISSLDLKTGIEITEALRLQMEVQKRLHEQLEV 365
             Y   S+ EGS    +     ++S    +G+       +QMEVQ+RLHEQLEV
Sbjct: 94  KEYGDHSTKEGSRASAMDIQRNVAS---SSGMMSRNMNEMQMEVQRRLHEQLEV 144

Transcription factor required for phloem identity. Has a dual role both in promoting phloem differentiation and in repressing xylem differentiation during vascular development.

Arabidopsis thaliana (taxid: 3702)

>sp|Q700D9|MYBF_ARATH Putative Myb family transcription factor At1g14600 OS=Arabidopsis thaliana GN=At1g14600 PE=2 SV=2

 Score = 88.2 bits (217), Expect = 8e-17,   Method: Compositional matrix adjust.
 Identities = 39/56 (69%), Positives = 46/56 (82%)

Query: 259 PRMRWTPELHEAFVEAVNQLGGSERATPKGVLKLMKVEGLTIYHVKSHLQKYRTAR 314
           PR+RWTPELH +FV AV+ LGG  +ATPK VLK+M V+GLTI HVKSHLQ YR +R
Sbjct: 24  PRLRWTPELHRSFVHAVDLLGGQYKATPKLVLKIMDVKGLTISHVKSHLQMYRGSR 79

Putative transcription factor.

Arabidopsis thaliana (taxid: 3702)

>sp|Q93WJ9|KAN1_ARATH Transcription repressor KAN1 OS=Arabidopsis thaliana GN=KAN1 PE=1 SV=1

 Score = 87.0 bits (214), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 47/90 (52%), Positives = 57/90 (63%), Gaps = 3/90 (3%)

Query: 242 IRTVVTPSASANNAPAKPRMRWTPELHEAFVEAVNQLGGSERATPKGVLKLMKVEGLTIY 301
           IR+   P      +   PRMRWT  LH  FV AV  LGG ERATPK VL+LM V+ LT+ 
Sbjct: 203 IRSRFLPKMPTKRSMRAPRMRWTSSLHARFVHAVELLGGHERATPKSVLELMDVKDLTLA 262

Query: 302 HVKSHLQKYRTAR--YRP-DSSEGSSEKRL 328
           HVKSHLQ YRT +   +P  SS+GS E+ +
Sbjct: 263 HVKSHLQMYRTVKTTNKPAASSDGSGEEEM 292

Transcriptional repressor that regulates lateral organ polarity. Promotes lateral organ abaxial identity by repressing the adaxial regulator ASYMMETRIC LEAVES2 (AS2) in abaxial cells. Required for abaxial identity in both leaves and carpels. Functions with KAN2 in the specification of polarity of the ovule outer integument. Regulates cambium activity by repressing the auxin efflux carrier PIN1. Plays a role in lateral root formation and development.

Arabidopsis thaliana (taxid: 3702)

>sp|Q941I2|KAN3_ARATH Probable transcription factor KAN3 OS=Arabidopsis thaliana GN=KAN3 PE=2 SV=1

 Score = 87.0 bits (214), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 44/80 (55%), Positives = 52/80 (65%), Gaps = 2/80 (2%)

Query: 248 PSASANNAPAKPRMRWTPELHEAFVEAVNQLGGSERATPKGVLKLMKVEGLTIYHVKSHL 307
           P  +A      PRMRWT  LH  FV AV  LGG ERATPK VL+LM V+ LT+ HVKSHL
Sbjct: 154 PRFTAKRGVRAPRMRWTTTLHAHFVHAVQLLGGHERATPKSVLELMDVQDLTLAHVKSHL 213

Query: 308 QKYRTARY--RPDSSEGSSE 325
           Q YRT +   +P +S G S+
Sbjct: 214 QMYRTIKSTEKPTTSSGQSD 233

Probable transcription factor that regulates lateral organ polarity. Plays a role in lateral root formation and development.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9C616|KAN2_ARATH Probable transcription factor KAN2 OS=Arabidopsis thaliana GN=KAN2 PE=2 SV=1

 Score = 85.5 bits (210), Expect = 6e-16,   Method: Compositional matrix adjust.
 Identities = 46/92 (50%), Positives = 52/92 (56%), Gaps = 6/92 (6%)

Query: 223 SMPAHRTQVHQQLPASSTEIRTVVTPSASANNAPAKPRMRWTPELHEAFVEAVNQLGGSE 282
           S P +    HQ L       R    P   A  +   PRMRWT  LH  FV AV  LGG E
Sbjct: 184 SNPNYHNHHHQTLN------RARFMPRFPAKRSMRAPRMRWTTTLHARFVHAVELLGGHE 237

Query: 283 RATPKGVLKLMKVEGLTIYHVKSHLQKYRTAR 314
           RATPK VL+LM V+ LT+ HVKSHLQ YRT +
Sbjct: 238 RATPKSVLELMDVKDLTLAHVKSHLQMYRTVK 269

Probable transcription factor that regulates lateral organ polarity. Promotes abaxial cell fate during lateral organd formation. Functions with KAN1 in the specification of polarity of the ovule outer integument.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9FJV5|KAN4_ARATH Probable transcription factor KAN4 OS=Arabidopsis thaliana GN=KAN4 PE=1 SV=1

 Score = 84.3 bits (207), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 43/70 (61%), Positives = 47/70 (67%), Gaps = 2/70 (2%)

Query: 259 PRMRWTPELHEAFVEAVNQLGGSERATPKGVLKLMKVEGLTIYHVKSHLQKYRTARYRPD 318
           PRMRWT  LH  FV AV  LGG ERATPK VL+LM V+ LT+ HVKSHLQ YRT +    
Sbjct: 106 PRMRWTSTLHAHFVHAVQLLGGHERATPKSVLELMNVKDLTLAHVKSHLQMYRTVKCTDK 165

Query: 319 SS--EGSSEK 326
            S  EG  EK
Sbjct: 166 GSPGEGKVEK 175

Probable transcritpion factor that regulates carpel integuments formation. Required for the specification of polarity in the ovule inner integument. Modulates the content of flavonols and proanthocyanidin in seeds.

Arabidopsis thaliana (taxid: 3702)

>sp|Q0J235|ROLL9_ORYSJ Probable transcription factor RL9 OS=Oryza sativa subsp. japonica GN=RL9 PE=2 SV=2

 Score = 83.2 bits (204), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 41/69 (59%), Positives = 49/69 (71%), Gaps = 2/69 (2%)

Query: 259 PRMRWTPELHEAFVEAVNQLGGSERATPKGVLKLMKVEGLTIYHVKSHLQKYRTARY--R 316
           PRMRWT  LH  FV AV  LGG ERATPK VL+LM V+ LT+ HVKSHLQ YRT +   +
Sbjct: 325 PRMRWTSTLHARFVHAVELLGGHERATPKSVLELMDVKDLTLAHVKSHLQMYRTVKSTDK 384

Query: 317 PDSSEGSSE 325
           P +S G ++
Sbjct: 385 PAASSGPAD 393

Probable transcription factor that regulates abaxial identity during leaf development.

Oryza sativa subsp. japonica (taxid: 39947)

>sp|Q940D0|ARR1_ARATH Two-component response regulator ARR1 OS=Arabidopsis thaliana GN=ARR1 PE=1 SV=2

 Score = 70.5 bits (171), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 35/59 (59%), Positives = 42/59 (71%), Gaps = 1/59 (1%)

Query: 258 KPRMRWTPELHEAFVEAVNQLGGSERATPKGVLKLMKVEGLTIYHVKSHLQKYRTARYR 316
           KPR+ W+ ELH+ FV AVNQLG  E+A PK +L+LM V GLT  +V SHLQKYR    R
Sbjct: 237 KPRVVWSVELHQQFVAAVNQLG-VEKAVPKKILELMNVPGLTRENVASHLQKYRIYLRR 294

Transcriptional activator that binds specifically to the DNA sequence 5'-[AG]GATT-3'. Functions as a response regulator involved in His-to-Asp phosphorelay signal transduction system. Phosphorylation of the Asp residue in the receiver domain activates the ability of the protein to promote the transcription of target genes. Could directly activate some type-A response regulators in response to cytokinins.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9FFH0|GLK2_ARATH Transcription activator GLK2 OS=Arabidopsis thaliana GN=GLK2 PE=2 SV=1

 Score = 69.7 bits (169), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 32/62 (51%), Positives = 45/62 (72%), Gaps = 1/62 (1%)

Query: 253 NNAPAKPRMRWTPELHEAFVEAVNQLGGSERATPKGVLKLMKVEGLTIYHVKSHLQKYRT 312
           N+   KP++ WTPELH  FV+AV QL G ++A P  +L++M V+ LT ++V SHLQKYR+
Sbjct: 142 NDIKKKPKVDWTPELHRKFVQAVEQL-GVDKAVPSRILEIMNVKSLTRHNVASHLQKYRS 200

Query: 313 AR 314
            R
Sbjct: 201 HR 202

Transcriptional activator that functions with GLK1 to promote chloroplast development. Acts as an activator of nuclear photosynthetic genes involved in chlorophyll biosynthesis, light harvesting, and electron transport. Acts in a cell-autonomous manner to coordinate and maintain the photosynthetic apparatus within individual cells. May function in photosynthetic capacity optimization by integrating responses to variable environmental and endogenous cues.

Arabidopsis thaliana (taxid: 3702)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	365
255571218	491	transcription factor, putative [Ricinus	1.0	0.743	0.727	1e-154
225438007	517	PREDICTED: uncharacterized protein LOC10	1.0	0.705	0.694	1e-133
357510131	489	Two-component response regulator ARR [Me	0.991	0.740	0.631	1e-129
388494430	489	unknown [Medicago truncatula]	0.991	0.740	0.629	1e-128
356572282	484	PREDICTED: uncharacterized protein LOC10	0.980	0.739	0.637	1e-126
357510133	468	Two-component response regulator ARR [Me	0.936	0.730	0.626	1e-121
356548089	479	PREDICTED: uncharacterized protein LOC10	0.986	0.751	0.614	1e-120
356505050	469	PREDICTED: uncharacterized protein LOC10	0.942	0.733	0.628	1e-119
224065555	314	predicted protein [Populus trichocarpa]	0.8	0.929	0.669	1e-117
297744202	432	unnamed protein product [Vitis vinifera]	0.772	0.652	0.687	1e-115

>gi|255571218|ref|XP_002526559.1| transcription factor, putative [Ricinus communis] gi|223534120|gb|EEF35837.1| transcription factor, putative [Ricinus communis]

 Score =  551 bits (1421), Expect = e-154,   Method: Compositional matrix adjust.
 Identities = 270/371 (72%), Positives = 311/371 (83%), Gaps = 6/371 (1%)

Query: 1   MEARP-LSIQRSSARQLNNLGVSGPMSSSLSVLPTPLEDTYSKLPNSQQVYMEQELRTRP 59
           MEARP LSIQRS  +QL+NLGVSG +SSS  VLPT  E+TY KL ++QQV ME+ L TRP
Sbjct: 1   MEARPTLSIQRSGVKQLSNLGVSGALSSSYPVLPTSREETYPKLSDAQQVAMEKGLMTRP 60

Query: 60  LAPAPHIPANSGVVGHIFSSSSGLSSDLQYSSASPHEKLPRTTSFISQSSTPI-----PQ 114
           L    H+P+N+GVVGH+FSSS+G S+DLQYSS SP EK  R T FISQS T +     PQ
Sbjct: 61  LVHTNHLPSNNGVVGHLFSSSAGFSTDLQYSSVSPQEKHSRNTPFISQSPTNVAALTLPQ 120

Query: 115 TSHSGLPQSSTSSHYTKESSSSWCPESLPGYVDFAANTPVQNSQMEGSSCSGAIVSEEFS 174
           + HSGL Q + SS Y KE+S+SWCPESLPG++DF  N+ VQN+Q+E +SC+GAI SEEFS
Sbjct: 121 SPHSGLLQCTASSQYDKENSASWCPESLPGFLDFPVNSHVQNNQIESNSCTGAITSEEFS 180

Query: 175 KRNDWHEWADQLITDDDPLGSSWNEILADTSMTEMEPKMSYQVPKTPTSMPAHRTQVHQQ 234
           KRNDW EWADQLITDDD L S+WN++L D S  EMEPKM+YQV K P+ + AH+ QVHQQ
Sbjct: 181 KRNDWQEWADQLITDDDALTSNWNDLLVDNSAPEMEPKMAYQVSKPPSDISAHQPQVHQQ 240

Query: 235 LPASSTEIRTVVTPSASANNAPAKPRMRWTPELHEAFVEAVNQLGGSERATPKGVLKLMK 294
           LPA S +IR V+TP++S N AP+KPRMRWTPELHEAFV+AVNQLGGSERATPKGVLKLMK
Sbjct: 241 LPAPSIDIRPVLTPTSSVNTAPSKPRMRWTPELHEAFVDAVNQLGGSERATPKGVLKLMK 300

Query: 295 VEGLTIYHVKSHLQKYRTARYRPDSSEGSSEKRLTPLEEISSLDLKTGIEITEALRLQME 354
           VEGLTIYHVKSHLQKYRTARYRPDS EGSSE++LTPLEEISSLDLKTGIEITEALRLQME
Sbjct: 301 VEGLTIYHVKSHLQKYRTARYRPDSLEGSSEQKLTPLEEISSLDLKTGIEITEALRLQME 360

Query: 355 VQKRLHEQLEV 365
           VQKRLHEQLE+
Sbjct: 361 VQKRLHEQLEI 371

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225438007|ref|XP_002270511.1| PREDICTED: uncharacterized protein LOC100244545 [Vitis vinifera]

 Score =  481 bits (1238), Expect = e-133,   Method: Compositional matrix adjust.
 Identities = 259/373 (69%), Positives = 306/373 (82%), Gaps = 8/373 (2%)

Query: 1   MEARP-LSIQRSSARQLNNLGVSGPMSSSLSVLPTPLEDTYSKLPNSQQVYMEQELRTRP 59
           MEA   LSI+ S ++QLNNLG SG +SSSLSVLPT LE+T+ KLP+SQQVY+ +E+ TRP
Sbjct: 1   MEAHSTLSIRGSGSKQLNNLGASGALSSSLSVLPTSLEETHPKLPDSQQVYVGREIMTRP 60

Query: 60  LA-PAPHIPANSGVVGHIFSSSSGLSSDLQYSSASPHEKLPRTTSFISQSST-----PIP 113
            A  A  +P+NSG VGHIFSSSSG S+DL +SS SPHE+  R+  FISQSS+     P+ 
Sbjct: 61  QAMHASPLPSNSGAVGHIFSSSSGYSTDLHFSSVSPHERHSRSAPFISQSSSNGTSLPLA 120

Query: 114 QTSHSGLPQSSTSSHYTKESS-SSWCPESLPGYVDFAANTPVQNSQMEGSSCSGAIVSEE 172
            +SHSG  QS+ SSHY +E++ +SWC +SL G++DF  NTPVQ+SQ+E  S SG I SE+
Sbjct: 121 HSSHSGQLQSTASSHYIEENNNASWCTDSLSGFLDFPVNTPVQSSQIESRSASGVIASED 180

Query: 173 FSKRNDWHEWADQLITDDDPLGSSWNEILADTSMTEMEPKMSYQVPKTPTSMPAHRTQVH 232
            SKR+DW EWADQLITDDD L S+WNE L DT++ ++EPKM+YQVPK  ++  A++ QVH
Sbjct: 181 LSKRHDWQEWADQLITDDDALNSNWNEFLVDTNVADVEPKMAYQVPKPSSNFSANQPQVH 240

Query: 233 QQLPASSTEIRTVVTPSASANNAPAKPRMRWTPELHEAFVEAVNQLGGSERATPKGVLKL 292
            QL A S E+  VVTPS+S N AP KPRMRWTPELHEAFVEAVNQLGGSERATPKGVLKL
Sbjct: 241 PQLSAPSGEVHNVVTPSSSVNTAPTKPRMRWTPELHEAFVEAVNQLGGSERATPKGVLKL 300

Query: 293 MKVEGLTIYHVKSHLQKYRTARYRPDSSEGSSEKRLTPLEEISSLDLKTGIEITEALRLQ 352
           MKVEGLTIYHVKSHLQKYRTARYRP+SSEGSSEKRLT +EE+SSLDLKTGIEITEALRLQ
Sbjct: 301 MKVEGLTIYHVKSHLQKYRTARYRPESSEGSSEKRLTSIEEMSSLDLKTGIEITEALRLQ 360

Query: 353 MEVQKRLHEQLEV 365
           MEVQKRLHEQLE+
Sbjct: 361 MEVQKRLHEQLEI 373

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357510131|ref|XP_003625354.1| Two-component response regulator ARR [Medicago truncatula] gi|355500369|gb|AES81572.1| Two-component response regulator ARR [Medicago truncatula]

 Score =  468 bits (1204), Expect = e-129,   Method: Compositional matrix adjust.
 Identities = 235/372 (63%), Positives = 298/372 (80%), Gaps = 10/372 (2%)

Query: 1   MEARP-LSIQRSSARQLNNLGVSGPMSSSLSVLPTPLEDTYSKLPNSQQVYMEQELRTRP 59
           MEARP  SI+RSS++QLNN+G+SG + SSLSV PTPLE+TY +  +SQ  Y+E++L+T+ 
Sbjct: 1   MEARPAFSIERSSSQQLNNIGMSGALPSSLSVHPTPLEETYPRFSDSQPTYVEKDLKTKT 60

Query: 60  LAPAPHIPANSGVVGHIFSSSSGLSSDLQYSSASPHEKLPRTTSFISQS-----STPIPQ 114
              + HI ++SG VGH+FSSS G S+DL +SS SPHEK  R+  FISQS     S P+P 
Sbjct: 61  FNHSSHI-SSSGAVGHMFSSSPGYSTDLHHSSLSPHEKHSRSAHFISQSLSNMASVPLPY 119

Query: 115 TSHSGLPQSSTSSHYTKESSSSWCPESLPGYVDFAANTPVQNSQMEGSSCSGAIVSEEFS 174
           +S++G   S+TS+HY+  +S+SW  + LP ++DF+AN  + N+Q+E  +C+  + +EEFS
Sbjct: 120 SSNNGPVPSTTSTHYSNGNSASWHADPLPSFLDFSANASIDNNQVESGACN-IMATEEFS 178

Query: 175 KRNDWHEWADQLITDDDPLGSSWNEILADTSMTEMEPKMSYQVPKTPTSMPA-HRTQVHQ 233
           KRNDW EWADQLI+DDD L S+WN++LAD ++ ++EPK    + K+ +  PA H++Q HQ
Sbjct: 179 KRNDWQEWADQLISDDDTLTSNWNDLLAD-NIQDLEPKAVESISKSSSQFPAGHQSQDHQ 237

Query: 234 QLPASSTEIRTVVTPSASANNAPAKPRMRWTPELHEAFVEAVNQLGGSERATPKGVLKLM 293
           QLPA S E    V PS+SAN+A  KPRMRWTPELHEAFVEAVNQLGGSERATPKGVLKLM
Sbjct: 238 QLPALSGENHVGVAPSSSANSATTKPRMRWTPELHEAFVEAVNQLGGSERATPKGVLKLM 297

Query: 294 KVEGLTIYHVKSHLQKYRTARYRPDSSEGSSEKRLTPLEEISSLDLKTGIEITEALRLQM 353
           KVEGLTIYHVKSHLQKYRTARYRP+SSEG+ EK+L+P+E+ISSLDLKTGIEITEALRLQM
Sbjct: 298 KVEGLTIYHVKSHLQKYRTARYRPESSEGAGEKKLSPIEDISSLDLKTGIEITEALRLQM 357

Query: 354 EVQKRLHEQLEV 365
           EVQKRLHEQLE+
Sbjct: 358 EVQKRLHEQLEI 369

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|388494430|gb|AFK35281.1| unknown [Medicago truncatula]

 Score =  464 bits (1193), Expect = e-128,   Method: Compositional matrix adjust.
 Identities = 234/372 (62%), Positives = 296/372 (79%), Gaps = 10/372 (2%)

Query: 1   MEARP-LSIQRSSARQLNNLGVSGPMSSSLSVLPTPLEDTYSKLPNSQQVYMEQELRTRP 59
           MEARP  SI+RSS++QLNN+G+SG + SSLSV PTPLE+TY +  +SQ  Y+E++L+T+ 
Sbjct: 1   MEARPAFSIERSSSQQLNNIGMSGALPSSLSVHPTPLEETYPRFSDSQPTYVEKDLKTKT 60

Query: 60  LAPAPHIPANSGVVGHIFSSSSGLSSDLQYSSASPHEKLPRTTSFISQS-----STPIPQ 114
              + HI ++SG VGH+FSSS G  +DL +SS SPHEK  R+  FISQS     S P+P 
Sbjct: 61  FNHSSHI-SSSGAVGHMFSSSPGYLTDLHHSSLSPHEKHSRSAHFISQSLSNMASVPLPY 119

Query: 115 TSHSGLPQSSTSSHYTKESSSSWCPESLPGYVDFAANTPVQNSQMEGSSCSGAIVSEEFS 174
           +S++G   S+TS+HY+  +S+SW  + LP ++DF+AN  + N+Q+E  +C+  + +EEFS
Sbjct: 120 SSNNGPVPSTTSTHYSNGNSASWHADPLPSFLDFSANASIDNNQVESGACN-IMATEEFS 178

Query: 175 KRNDWHEWADQLITDDDPLGSSWNEILADTSMTEMEPKMSYQVPKTPTSMPA-HRTQVHQ 233
           KRNDW EWADQLI+DDD L S+WN++LAD ++ ++EPK    + K  +  PA H++Q HQ
Sbjct: 179 KRNDWQEWADQLISDDDTLTSNWNDLLAD-NIQDLEPKAVESISKPSSQFPAGHQSQDHQ 237

Query: 234 QLPASSTEIRTVVTPSASANNAPAKPRMRWTPELHEAFVEAVNQLGGSERATPKGVLKLM 293
           QLPA S E    V PS+SAN+A  KPRMRWTPELHEAFVEAVNQLGGSERATPKGVLKLM
Sbjct: 238 QLPALSGENHVGVAPSSSANSATTKPRMRWTPELHEAFVEAVNQLGGSERATPKGVLKLM 297

Query: 294 KVEGLTIYHVKSHLQKYRTARYRPDSSEGSSEKRLTPLEEISSLDLKTGIEITEALRLQM 353
           KVEGLTIYHVKSHLQKYRTARYRP+SSEG+ EK+L+P+E+ISSLDLKTGIEITEALRLQM
Sbjct: 298 KVEGLTIYHVKSHLQKYRTARYRPESSEGAGEKKLSPIEDISSLDLKTGIEITEALRLQM 357

Query: 354 EVQKRLHEQLEV 365
           EVQKRLHEQLE+
Sbjct: 358 EVQKRLHEQLEI 369

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356572282|ref|XP_003554298.1| PREDICTED: uncharacterized protein LOC100810560 [Glycine max]

 Score =  458 bits (1178), Expect = e-126,   Method: Compositional matrix adjust.
 Identities = 237/372 (63%), Positives = 296/372 (79%), Gaps = 14/372 (3%)

Query: 1   MEAR-PLSIQRSSARQLNNLGVSGPMSSSLSVLPTPLEDTYSKLPNSQQVYMEQELRTRP 59
           MEAR   SI RS+A+QLNN+G+S    SSL  LP+PLE+TY KL +S+ V+ME+EL+T+P
Sbjct: 1   MEARSAFSIDRSNAKQLNNMGMSEAFPSSLPALPSPLEETYPKLSDSKPVFMEKELKTKP 60

Query: 60  LAPAPHIPANSGVVGHIFSSSSGLSSDLQYSSASPHEKLPRTTSFISQS-----STPIPQ 114
              + H+  +SG VGH+FSSS G S+DL +SS S HEK PR T FISQS     S P+  
Sbjct: 61  YTHSSHL-TSSGAVGHMFSSSPGYSTDLHHSSFSSHEKQPRNTHFISQSLSNMASLPLSY 119

Query: 115 TSHSGLPQSSTSSHYTKESSSSWCPESLPGYVDFAANTPVQNSQMEGSSCSGAIVSEEFS 174
           +S+S    S+TS+ Y+  +S SW  +SLP ++DF ANT + NSQ+E S C+  + +EE+S
Sbjct: 120 SSNSEPIPSTTSTPYSNGNSVSWHTDSLPSFLDFPANTSIGNSQVESSDCN-IMATEEYS 178

Query: 175 KRNDWHEWADQLITDDDPLGSSWNEILADTSMTEMEPKMSYQVPKTPTSMP-AHRTQVHQ 233
           KRNDW EWADQLI+D DPL S+WN++LAD ++ ++EPK    V K+ + +P  H++Q HQ
Sbjct: 179 KRNDWQEWADQLISDVDPLTSNWNDLLAD-NIQDLEPK----VAKSSSQLPIGHQSQSHQ 233

Query: 234 QLPASSTEIRTVVTPSASANNAPAKPRMRWTPELHEAFVEAVNQLGGSERATPKGVLKLM 293
           QLPASS E R  V P++S N+APAKPRMRWTPELHEAFVEAVNQLGGSERATPKGVLKLM
Sbjct: 234 QLPASSGENRVGVAPTSSTNSAPAKPRMRWTPELHEAFVEAVNQLGGSERATPKGVLKLM 293

Query: 294 KVEGLTIYHVKSHLQKYRTARYRPDSSEGSSEKRLTPLEEISSLDLKTGIEITEALRLQM 353
           KV+GLTIYHVKSHLQKYRTARYRP+SSEG++EK+L+P+EE+SSLDLKTGIEITEALRLQM
Sbjct: 294 KVDGLTIYHVKSHLQKYRTARYRPESSEGAAEKKLSPIEEMSSLDLKTGIEITEALRLQM 353

Query: 354 EVQKRLHEQLEV 365
           EVQKRLHEQLE+
Sbjct: 354 EVQKRLHEQLEI 365

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357510133|ref|XP_003625355.1| Two-component response regulator ARR [Medicago truncatula] gi|355500370|gb|AES81573.1| Two-component response regulator ARR [Medicago truncatula]

 Score =  439 bits (1129), Expect = e-121,   Method: Compositional matrix adjust.
 Identities = 220/351 (62%), Positives = 279/351 (79%), Gaps = 9/351 (2%)

Query: 21  VSGPMSSSLSVLPTPLEDTYSKLPNSQQVYMEQELRTRPLAPAPHIPANSGVVGHIFSSS 80
           +SG + SSLSV PTPLE+TY +  +SQ  Y+E++L+T+    + HI ++SG VGH+FSSS
Sbjct: 1   MSGALPSSLSVHPTPLEETYPRFSDSQPTYVEKDLKTKTFNHSSHI-SSSGAVGHMFSSS 59

Query: 81  SGLSSDLQYSSASPHEKLPRTTSFISQS-----STPIPQTSHSGLPQSSTSSHYTKESSS 135
            G S+DL +SS SPHEK  R+  FISQS     S P+P +S++G   S+TS+HY+  +S+
Sbjct: 60  PGYSTDLHHSSLSPHEKHSRSAHFISQSLSNMASVPLPYSSNNGPVPSTTSTHYSNGNSA 119

Query: 136 SWCPESLPGYVDFAANTPVQNSQMEGSSCSGAIVSEEFSKRNDWHEWADQLITDDDPLGS 195
           SW  + LP ++DF+AN  + N+Q+E  +C+  + +EEFSKRNDW EWADQLI+DDD L S
Sbjct: 120 SWHADPLPSFLDFSANASIDNNQVESGACN-IMATEEFSKRNDWQEWADQLISDDDTLTS 178

Query: 196 SWNEILADTSMTEMEPKMSYQVPKTPTSMPA-HRTQVHQQLPASSTEIRTVVTPSASANN 254
           +WN++LAD ++ ++EPK    + K+ +  PA H++Q HQQLPA S E    V PS+SAN+
Sbjct: 179 NWNDLLAD-NIQDLEPKAVESISKSSSQFPAGHQSQDHQQLPALSGENHVGVAPSSSANS 237

Query: 255 APAKPRMRWTPELHEAFVEAVNQLGGSERATPKGVLKLMKVEGLTIYHVKSHLQKYRTAR 314
           A  KPRMRWTPELHEAFVEAVNQLGGSERATPKGVLKLMKVEGLTIYHVKSHLQKYRTAR
Sbjct: 238 ATTKPRMRWTPELHEAFVEAVNQLGGSERATPKGVLKLMKVEGLTIYHVKSHLQKYRTAR 297

Query: 315 YRPDSSEGSSEKRLTPLEEISSLDLKTGIEITEALRLQMEVQKRLHEQLEV 365
           YRP+SSEG+ EK+L+P+E+ISSLDLKTGIEITEALRLQMEVQKRLHEQLE+
Sbjct: 298 YRPESSEGAGEKKLSPIEDISSLDLKTGIEITEALRLQMEVQKRLHEQLEI 348

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356548089|ref|XP_003542436.1| PREDICTED: uncharacterized protein LOC100793593 [Glycine max]

 Score =  436 bits (1122), Expect = e-120,   Method: Compositional matrix adjust.
 Identities = 228/371 (61%), Positives = 287/371 (77%), Gaps = 11/371 (2%)

Query: 1   MEARP-LSIQRSSARQLNNLGVSGPMSSSLSVLPTPLEDTYSKLPNSQQVYMEQELRTRP 59
           MEA P  SI+RS  +QLNN+G+SG +SSSLS+LP P E+ + KLP SQ  ++EQEL TRP
Sbjct: 1   MEAHPTFSIERS--KQLNNMGMSGALSSSLSILPIPPEEMFPKLPQSQLDFVEQELMTRP 58

Query: 60  LAPAPHIPANSGVVGHIFSSSSGLSSDLQYSSASPHEKLPRTTSFISQSSTPIPQ----- 114
              + ++ +  GVVGHIFSSS G S+DL +SS SP EK       ISQSST I Q     
Sbjct: 59  FTHSSYLNSG-GVVGHIFSSSPGYSTDLHHSSLSPDEKHSTNAHLISQSSTNITQFPLSY 117

Query: 115 TSHSGLPQSSTSSHYTKESSSSWCPESLPGYVDFAANTPVQNSQMEGSSCSGAIVSEEFS 174
           +S++G P S+T SHY+KESS SW  +SLP ++DF  N  + N+++E S+C   + SEE+S
Sbjct: 118 SSNTGPPTSATPSHYSKESSVSWHTDSLPSFLDFPENGSIDNNRVESSACP-IMASEEYS 176

Query: 175 KRNDWHEWADQLITDDDPLGSSWNEILADTSMTEMEPKMSYQVPKTPTSMPAHRTQVHQQ 234
           K+NDW EWA++LI+DDD L ++WN++LAD ++ ++EPK+ +QV K  + +P H++Q HQQ
Sbjct: 177 KQNDWQEWAERLISDDDTLTTNWNDLLAD-NIQDLEPKVPFQVSKPLSQIPGHQSQGHQQ 235

Query: 235 LPASSTEIRTVVTPSASANNAPAKPRMRWTPELHEAFVEAVNQLGGSERATPKGVLKLMK 294
           LPAS  E       S+SAN APAK RMRWTPELHEAFVEAVNQLGGSE+ATPKGVLKLMK
Sbjct: 236 LPASYGENCIGAALSSSANFAPAKSRMRWTPELHEAFVEAVNQLGGSEKATPKGVLKLMK 295

Query: 295 VEGLTIYHVKSHLQKYRTARYRPDSSEGSSEKRLTPLEEISSLDLKTGIEITEALRLQME 354
           VEGLTIYHVKSHLQKYRTARYRP+SSEG  EK+ + +EE++SLDL+TGIEITEALRLQME
Sbjct: 296 VEGLTIYHVKSHLQKYRTARYRPESSEGVMEKKTSSVEEMASLDLRTGIEITEALRLQME 355

Query: 355 VQKRLHEQLEV 365
           VQKRLHEQLE+
Sbjct: 356 VQKRLHEQLEI 366

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356505050|ref|XP_003521305.1| PREDICTED: uncharacterized protein LOC100784711 [Glycine max]

 Score =  436 bits (1120), Expect = e-119,   Method: Compositional matrix adjust.
 Identities = 222/353 (62%), Positives = 281/353 (79%), Gaps = 9/353 (2%)

Query: 19  LGVSGPMSSSLSVLPTPLEDTYSKLPNSQQVYMEQELRTRPLAPAPHIPANSGVVGHIFS 78
           +G+S    SSL VLP+PLE+T+ KL +S+  +ME+EL+T+P   + H+  +SG VGH+FS
Sbjct: 1   MGMSEVFPSSLPVLPSPLEETFPKLSDSRPAFMEKELKTKPFTHSSHL-TSSGAVGHMFS 59

Query: 79  SSSGLSSDLQYSSASPHEKLPRTTSFISQ-----SSTPIPQTSHSGLPQSSTSSHYTKES 133
           SS G S+DL +SS S +EK PR T FISQ     +S P+  +S+S    S+TS+ Y+  +
Sbjct: 60  SSPGYSTDLHHSSFSSYEKQPRNTHFISQPLGNMASLPLSYSSNSEPIPSTTSTPYSNGN 119

Query: 134 SSSWCPESLPGYVDFAANTPVQNSQMEGSSCSGAIVSEEFSKRNDWHEWADQLITDDDPL 193
           S SW  +SLP ++DF ANT + NSQ+E  +C+  + +EE+SKRNDW EWADQLI+D DPL
Sbjct: 120 SVSWHTDSLPSFLDFTANTSIDNSQVENRACN-IMATEEYSKRNDWQEWADQLISDVDPL 178

Query: 194 GSSWNEILADTSMTEMEPKMSYQVPKTPTSMPA-HRTQVHQQLPASSTEIRTVVTPSASA 252
            S+WN++LAD ++ ++EPK  YQV K+ + +P  H++Q HQQL ASS E R  V P++SA
Sbjct: 179 TSNWNDLLAD-NIQDLEPKAVYQVTKSSSQLPIEHQSQSHQQLCASSGENRVGVAPTSSA 237

Query: 253 NNAPAKPRMRWTPELHEAFVEAVNQLGGSERATPKGVLKLMKVEGLTIYHVKSHLQKYRT 312
           N+APAKPRMRWTPELHEAFVEAVNQLGGSERATPKGVLKLMKVEGLTIYHVKSHLQKYRT
Sbjct: 238 NSAPAKPRMRWTPELHEAFVEAVNQLGGSERATPKGVLKLMKVEGLTIYHVKSHLQKYRT 297

Query: 313 ARYRPDSSEGSSEKRLTPLEEISSLDLKTGIEITEALRLQMEVQKRLHEQLEV 365
           ARYRP+SSEG++EK L+ +EE+SSLDLKTGIEITEALRLQMEVQKRLHEQLE+
Sbjct: 298 ARYRPESSEGAAEKNLSRIEEMSSLDLKTGIEITEALRLQMEVQKRLHEQLEI 350

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224065555|ref|XP_002301855.1| predicted protein [Populus trichocarpa] gi|222843581|gb|EEE81128.1| predicted protein [Populus trichocarpa]

 Score =  427 bits (1097), Expect = e-117,   Method: Compositional matrix adjust.
 Identities = 211/315 (66%), Positives = 247/315 (78%), Gaps = 23/315 (7%)

Query: 51  MEQELRTRPLAPAPHIPANSGVVGHIFSSSSGLSSDLQYSSASPHEKLPRTTSFISQSST 110
           ME+EL TRPL  A H+P+N+GVVGH+FSSS+  S+DLQYSS +P EK  R T FISQSS 
Sbjct: 1   MERELMTRPLVHASHLPSNNGVVGHLFSSSASFSTDLQYSSVTPREKHSRNTPFISQSS- 59

Query: 111 PIPQTSHSGLPQSSTSSHYTKESSSSWCPESLPGYVDFAANTPVQNSQMEGSSCSGAIVS 170
                           ++      +SWCPES PG++DF  NT VQN+Q+E +SC+G + S
Sbjct: 60  ----------------ANAGALLIASWCPESPPGFLDFPTNTTVQNNQIESNSCAGVMAS 103

Query: 171 EEFSKRNDWHEWADQLITDDDPLGSSWNEILADTSMTEMEPKMSYQVPKTPTSMPAHRTQ 230
           EEF KRNDW EWADQLITDDD L ++WNE+LADTS+      M+YQV K  ++ P   +Q
Sbjct: 104 EEFGKRNDWQEWADQLITDDDALTTNWNELLADTSI------MAYQVSKPSSNTPVQHSQ 157

Query: 231 VHQQLPASSTEIRTVVTPSASANNAPAKPRMRWTPELHEAFVEAVNQLGGSERATPKGVL 290
            H QLP+ S EIR V+TP++SAN+AP KPRMRWTPELHEAFVEAVN LGGSERATPKGVL
Sbjct: 158 GHLQLPSLSAEIRPVLTPTSSANSAPTKPRMRWTPELHEAFVEAVNNLGGSERATPKGVL 217

Query: 291 KLMKVEGLTIYHVKSHLQKYRTARYRPDSSEGSSEKRLTPLEEISSLDLKTGIEITEALR 350
           KLMKV+ LTIYHVKSHLQKYRTARYRP+SSEGSSEKRLT ++EISSLDLKTGIEITEALR
Sbjct: 218 KLMKVDSLTIYHVKSHLQKYRTARYRPESSEGSSEKRLTSIDEISSLDLKTGIEITEALR 277

Query: 351 LQMEVQKRLHEQLEV 365
           LQMEVQKRLHEQLE+
Sbjct: 278 LQMEVQKRLHEQLEI 292

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297744202|emb|CBI37172.3| unnamed protein product [Vitis vinifera]

 Score =  421 bits (1083), Expect = e-115,   Method: Compositional matrix adjust.
 Identities = 207/301 (68%), Positives = 240/301 (79%), Gaps = 19/301 (6%)

Query: 66  IPANSGVVGHIFSSSSGLSSDLQYSSASPHEKLPRTTSFISQSSTPIPQTSHSGLPQSST 125
           +P+NSG VGHIFSSSSG S+DL +SS SPHE+  R                     QS+ 
Sbjct: 6   LPSNSGAVGHIFSSSSGYSTDLHFSSVSPHERHSRRQ------------------LQSTA 47

Query: 126 SSHYTKESS-SSWCPESLPGYVDFAANTPVQNSQMEGSSCSGAIVSEEFSKRNDWHEWAD 184
           SSHY +E++ +SWC +SL G++DF  NTPVQ+SQ+E  S SG I SE+ SKR+DW EWAD
Sbjct: 48  SSHYIEENNNASWCTDSLSGFLDFPVNTPVQSSQIESRSASGVIASEDLSKRHDWQEWAD 107

Query: 185 QLITDDDPLGSSWNEILADTSMTEMEPKMSYQVPKTPTSMPAHRTQVHQQLPASSTEIRT 244
           QLITDDD L S+WNE L DT++ ++EPKM+YQVPK  ++  A++ QVH QL A S E+  
Sbjct: 108 QLITDDDALNSNWNEFLVDTNVADVEPKMAYQVPKPSSNFSANQPQVHPQLSAPSGEVHN 167

Query: 245 VVTPSASANNAPAKPRMRWTPELHEAFVEAVNQLGGSERATPKGVLKLMKVEGLTIYHVK 304
           VVTPS+S N AP KPRMRWTPELHEAFVEAVNQLGGSERATPKGVLKLMKVEGLTIYHVK
Sbjct: 168 VVTPSSSVNTAPTKPRMRWTPELHEAFVEAVNQLGGSERATPKGVLKLMKVEGLTIYHVK 227

Query: 305 SHLQKYRTARYRPDSSEGSSEKRLTPLEEISSLDLKTGIEITEALRLQMEVQKRLHEQLE 364
           SHLQKYRTARYRP+SSEGSSEKRLT +EE+SSLDLKTGIEITEALRLQMEVQKRLHEQLE
Sbjct: 228 SHLQKYRTARYRPESSEGSSEKRLTSIEEMSSLDLKTGIEITEALRLQMEVQKRLHEQLE 287

Query: 365 V 365
           +
Sbjct: 288 I 288

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	365
TAIR|locus:2139865	409	PHR1 "phosphate starvation res	0.819	0.731	0.488	2.3e-71
TAIR|locus:2148720	413	PHL1 "AT5G29000" [Arabidopsis	0.602	0.532	0.524	3.3e-63
TAIR|locus:2038957	397	AT2G20400 "AT2G20400" [Arabido	0.597	0.549	0.502	6.1e-52
TAIR|locus:2100880	442	AT3G04450 [Arabidopsis thalian	0.904	0.746	0.382	7.7e-52
TAIR|locus:2045761	286	AT2G01060 [Arabidopsis thalian	0.295	0.377	0.678	7.4e-34
TAIR|locus:2089260	449	AT3G13040 [Arabidopsis thalian	0.542	0.440	0.441	1.5e-33
TAIR|locus:2170199	375	AT5G06800 [Arabidopsis thalian	0.293	0.285	0.611	1.1e-32
TAIR|locus:2095933	394	MYR2 [Arabidopsis thaliana (ta	0.295	0.274	0.504	1.8e-25
TAIR|locus:2093726	298	AT3G24120 [Arabidopsis thalian	0.293	0.359	0.512	7.6e-25
TAIR|locus:2172394	402	MYR1 "myb-related protein 1" [	0.295	0.268	0.495	9.7e-25

TAIR|locus:2139865 PHR1 "phosphate starvation response 1" [Arabidopsis thaliana (taxid:3702)]

 Score = 722 (259.2 bits), Expect = 2.3e-71, P = 2.3e-71
 Identities = 167/342 (48%), Positives = 210/342 (61%)

Query:    33 PTPLEDTYSKLPNSQQVYMEQELRTRPLAPAPHI--PANSGVVGHIFXXXXXXXXXXXXX 90
             P+P+ED++ +  N+ Q      L +RPL    H+   +N G VGHI              
Sbjct:    26 PSPVEDSFMRSDNNSQ------LMSRPLGQTYHLLSSSNGGAVGHICSSSSSGFATNLHY 79

Query:    91 XXX-PHEKLPRTTSFISQSSTPIPQTSHSGLPQXXXXXXXXXXXXXXWCPESLPG-YVDF 148
                  HEK    T   S ++   P  + S                  WC +SLPG ++DF
Sbjct:    80 STMVSHEKQQHYTGSSSNNAVQTPSNNDSA-----------------WCHDSLPGGFLDF 122

Query:   149 AANTP-VQNS-QMEGSSCSGAIVSEEFSKRNDWHEWADQLITDDDPLGSS-WNEILADT- 204
                 P +QN+ Q+E    + A   ++  KR+DWHEWAD LITDDDPL S+ WN++L +T 
Sbjct:   123 HETNPAIQNNCQIEDGGIAAAF--DDIQKRSDWHEWADHLITDDDPLMSTNWNDLLLETN 180

Query:   205 SMTEMEPKMSYQVPKTPTSMPAHRTQVHQQLPASSTEIRTVVTXXXXXXXXXXKPRMRWT 264
             S ++ + + + Q+P+     P    Q+ QQ P+ S E+R V T          K RMRWT
Sbjct:   181 SNSDSKDQKTLQIPQ-----P----QIVQQQPSPSVELRPVSTTSSNSNNGTGKARMRWT 231

Query:   265 PELHEAFVEAVNQLGGSERATPKGVLKLMKVEGLTIYHVKSHLQKYRTARYRPDSSE-GS 323
             PELHEAFVEAVN LGGSERATPKGVLK+MKVEGLTIYHVKSHLQKYRTARYRP+ SE GS
Sbjct:   232 PELHEAFVEAVNSLGGSERATPKGVLKIMKVEGLTIYHVKSHLQKYRTARYRPEPSETGS 291

Query:   324 SEKRLTPLEEISSLDLKTGIEITEALRLQMEVQKRLHEQLEV 365
              E++LTPLE I+SLDLK GI ITEALRLQMEVQK+LHEQLE+
Sbjct:   292 PERKLTPLEHITSLDLKGGIGITEALRLQMEVQKQLHEQLEI 333

GO:0005634 "nucleus" evidence=ISM;IDA

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

GO:0006355 "regulation of transcription, DNA-dependent" evidence=TAS

GO:0016036 "cellular response to phosphate starvation" evidence=IMP

GO:0055063 "sulfate ion homeostasis" evidence=IMP

GO:0007623 "circadian rhythm" evidence=IEP

GO:0071486 "cellular response to high light intensity" evidence=IMP

TAIR|locus:2148720 PHL1 "AT5G29000" [Arabidopsis thaliana (taxid:3702)]

 Score = 556 (200.8 bits), Expect = 3.3e-63, Sum P(2) = 3.3e-63
 Identities = 120/229 (52%), Positives = 152/229 (66%)

Query:   140 ESLPGYVDFAANTPVQNSQMEGSSCSGAIVSEEFSKRNDWHEWADQLITDDDPLGSSWNE 199
             + L  + DF+ + PVQN Q E S       S E  K+++W +WADQLI+ DD    +W+E
Sbjct:   119 DPLHEFFDFSDHVPVQNLQAESSGVR-VDSSVELHKKSEWQDWADQLISVDDGSEPNWSE 177

Query:   200 ILADTSMTEMEPKMSYQVPKTPTSMPAHRTQVHQQLPASSTEIRTVVTXXXXXXXXXXKP 259
             +L D+S     P    ++P     +P      +QQ    S+E + +            K 
Sbjct:   178 LLGDSS--SHNPNS--EIPTPFLDVPRLDITANQQQQMVSSEDQ-LSGRNSSSSVATSKQ 232

Query:   260 RMRWTPELHEAFVEAVNQLGGSERATPKGVLKLMKVEGLTIYHVKSHLQKYRTARYRPDS 319
             RMRWTPELHEAFVEAVNQLGGSERATPK VLKL+   GLTIYHVKSHLQKYRTARY+P++
Sbjct:   233 RMRWTPELHEAFVEAVNQLGGSERATPKAVLKLLNNPGLTIYHVKSHLQKYRTARYKPET 292

Query:   320 SE--GS-SEKRLTPLEEISSLDLKTGIEITEALRLQMEVQKRLHEQLEV 365
             SE  G   EK++T +E+I SLD+KT +EIT+ALRLQMEVQKRLHEQLE+
Sbjct:   293 SEVTGEPQEKKMTSIEDIKSLDMKTSVEITQALRLQMEVQKRLHEQLEI 341

GO:0003677 "DNA binding" evidence=ISS

GO:0005634 "nucleus" evidence=ISM;ISS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

TAIR|locus:2038957 AT2G20400 "AT2G20400" [Arabidopsis thaliana (taxid:3702)]

 Score = 496 (179.7 bits), Expect = 6.1e-52, Sum P(2) = 6.1e-52
 Identities = 118/235 (50%), Positives = 145/235 (61%)

Query:   137 WCPESLPGYVDFAANTPVQNSQMEGSSCSGAIVSEEFSKRNDWHEWADQLIT-DDDPLGS 195
             W P  LP ++ F + +P  N  ME     G I  +E  K++D   W D LIT D+DPL S
Sbjct:   113 WIPSPLP-HIYFPSGSP--NLIME----DGVI--DEIHKQSDLPLWYDDLITTDEDPLMS 163

Query:   196 S-WNEILADTSMTE----MEPKMSYQVPKTPTSMPAHRTQVHQQLPASST-EIRTVVTXX 249
             S   ++L DT+        +P M  Q+ + P ++    +   +  P   T    +     
Sbjct:   164 SILGDLLLDTNFNSASKVQQPSMQSQIQQ-PQAVLQQPSSCVELRPLDRTVSSNSNNNSN 222

Query:   250 XXXXXXXXKPRMRWTPELHEAFVEAVNQLGGSERATPKGVLKLMKVEGLTIYHVKSHLQK 309
                     K RMRWTPELHE FV+AVNQLGGS  ATPKGVLK MKVEGLTI+HVKSHLQK
Sbjct:   223 SNNAAAAAKGRMRWTPELHEVFVDAVNQLGGSNEATPKGVLKHMKVEGLTIFHVKSHLQK 282

Query:   310 YRTARYRPDSSEGSSEKRLTPLEEISSLDLKTGIEITEALRLQMEVQKRLHEQLE 364
             YRTA+Y P  SEGS E RLTPLE+I+S D K GI+ITE LR+QME QK+LHEQLE
Sbjct:   283 YRTAKYIPVPSEGSPEARLTPLEQITSDDTKRGIDITETLRIQMEHQKKLHEQLE 337

GO:0003677 "DNA binding" evidence=ISS

GO:0005634 "nucleus" evidence=ISM

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

GO:0006355 "regulation of transcription, DNA-dependent" evidence=TAS

GO:0009555 "pollen development" evidence=IMP

TAIR|locus:2100880 AT3G04450 [Arabidopsis thaliana (taxid:3702)]

 Score = 518 (187.4 bits), Expect = 7.7e-52, Sum P(2) = 7.7e-52
 Identities = 139/363 (38%), Positives = 185/363 (50%)

Query:    17 NNLGVSGPMSSSLSVLPTPLEDTYSKLPNSQQVYMEQELRTRPLAPAPHIPANSGVV--G 74
             ++ G    +SSS ++L    E  ++  PN+  V   QE       P    P  SG    G
Sbjct:     5 SDFGFPSAISSSFTILE---ERYHNNFPNTLCVSSGQESMNNNPVPCQVFPLVSGGSSGG 61

Query:    75 HIFXXXXXX---XXXXXXXXXXPH-EKLPR---TTSFISQSST--PIPQTSHSGLPQXXX 125
             ++F                   P    +PR   T + +S        P  +HS       
Sbjct:    62 NLFSSSSGFCNGVYVSSSSQARPSVSTVPRDRITVAHVSGEGQRQECPVETHS----LQL 117

Query:   126 XXXXXXXXXXXWCPESLPGYVDFAANTPVQNSQMEGSSCSGAIVSEEFSKRNDWHEWADQ 185
                        W  + + G+ DF    PV + Q   +S    + S+E   + +W +WADQ
Sbjct:   118 INQPQEQKIMTWSSDQIRGFFDF----PVPDPQ--AASSRTMVSSKEVLSKCEWPDWADQ 171

Query:   186 LITDDDPLGSSWNEILADTSMTEMEPKMSYQVPKTPTSMPAHRTQVHQQLPASSTEIRTV 245
             LI+DD  L  +W+E+L D ++  +  K+  Q           R Q HQ  P+    +   
Sbjct:   172 LISDDS-LEPNWSELLGDPNVLNLYSKIETQSSDIARQEIVFRNQ-HQVDPS----MEPF 225

Query:   246 VTXXXXXXXXXXKPRMRWTPELHEAFVEAVNQLGGSERATPKGVLKLMKVEGLTIYHVKS 305
                         K RMRWTPELHEAFVEA+NQLGGSERATPK VLKL+   GLT+YHVKS
Sbjct:   226 NAKSPPASSMTSKQRMRWTPELHEAFVEAINQLGGSERATPKAVLKLINSPGLTVYHVKS 285

Query:   306 HLQKYRTARYRPDSSEGSSE---KRLTPLEEISSLDLKTGIEITEALRLQMEVQKRLHEQ 362
             HLQKYRTARY+P+ S+ + E   K L  +E+I SLDLKT IEITEALRLQM+VQK+LHEQ
Sbjct:   286 HLQKYRTARYKPELSKDTEEPLVKNLKTIEDIKSLDLKTSIEITEALRLQMKVQKQLHEQ 345

Query:   363 LEV 365
             LE+
Sbjct:   346 LEI 348

GO:0005634 "nucleus" evidence=ISM

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

GO:0006355 "regulation of transcription, DNA-dependent" evidence=TAS

GO:0016556 "mRNA modification" evidence=RCA

TAIR|locus:2045761 AT2G01060 [Arabidopsis thaliana (taxid:3702)]

 Score = 368 (134.6 bits), Expect = 7.4e-34, P = 7.4e-34
 Identities = 74/109 (67%), Positives = 88/109 (80%)

Query:   258 KPRMRWTPELHEAFVEAVNQLGGSERATPKGVLKLMKVEGLTIYHVKSHLQKYRTARYRP 317
             K R+RWT ELHE FV+AV QLGG +RATPKGVL++M V+GLTIYHVKSHLQKYR A+Y P
Sbjct:    15 KQRLRWTHELHERFVDAVAQLGGPDRATPKGVLRVMGVQGLTIYHVKSHLQKYRLAKYLP 74

Query:   318 DSS-EGSSEKRLTPLEEISSLDLKTGIEITEALRLQMEVQKRLHEQLEV 365
             DSS EG    +    + +S LD  +G++ITEAL+LQMEVQKRLHEQLEV
Sbjct:    75 DSSSEGKKTDKKESGDMLSGLDGSSGMQITEALKLQMEVQKRLHEQLEV 123

GO:0005634 "nucleus" evidence=ISM

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

GO:0006355 "regulation of transcription, DNA-dependent" evidence=TAS

GO:0006499 "N-terminal protein myristoylation" evidence=RCA

GO:0006635 "fatty acid beta-oxidation" evidence=RCA

GO:0006891 "intra-Golgi vesicle-mediated transport" evidence=RCA

GO:0016558 "protein import into peroxisome matrix" evidence=RCA

TAIR|locus:2089260 AT3G13040 [Arabidopsis thaliana (taxid:3702)]

 Score = 365 (133.5 bits), Expect = 1.5e-33, P = 1.5e-33
 Identities = 95/215 (44%), Positives = 125/215 (58%)

Query:   159 MEGSSCSGAIVSEEFSKRNDWHEWADQLITDDDPLGSSWNEI-LADTSMTEMEPKMSYQV 217
             + G +CS      +F   ND +  +DQ+      L    +E+ LA T   E  P++  ++
Sbjct:   148 LSGDACSDGDF-HDFGCSNDSYCLSDQM-----ELQFLSDELELAITDRAET-PRLD-EI 199

Query:   218 PKTP-TSMPAHRTQVHQQLPASSTEIRTVVTXXXXXXXXXXKPRMRWTPELHEAFVEAVN 276
              +TP  S P  R    Q     +  +  V +          K RMRWTPELHE+FV+AV 
Sbjct:   200 YETPLASNPVTRLSPSQSCVPGAMSVDVVSSHPSPGSAANQKSRMRWTPELHESFVKAVI 259

Query:   277 QLGGSERATPKGVLKLMKVEGLTIYHVKSHLQKYRTARYRPDSSE-----GSSEKRLTPL 331
             +L G E+ATPK V KLM VEGLTIYHVKSHLQKYR A+Y P+  E      S EK+L  L
Sbjct:   260 KLEGPEKATPKAVKKLMNVEGLTIYHVKSHLQKYRLAKYMPEKKEEKRTDNSEEKKLA-L 318

Query:   332 EEISSLDLKTG-IEITEALRLQMEVQKRLHEQLEV 365
              +  + + K G I++TEALR+QMEVQK+LHEQLEV
Sbjct:   319 SKSEADEKKKGAIQLTEALRMQMEVQKQLHEQLEV 353

GO:0005634 "nucleus" evidence=ISM

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

GO:0006355 "regulation of transcription, DNA-dependent" evidence=TAS

GO:0015996 "chlorophyll catabolic process" evidence=RCA

TAIR|locus:2170199 AT5G06800 [Arabidopsis thaliana (taxid:3702)]

 Score = 357 (130.7 bits), Expect = 1.1e-32, P = 1.1e-32
 Identities = 66/108 (61%), Positives = 87/108 (80%)

Query:   258 KPRMRWTPELHEAFVEAVNQLGGSERATPKGVLKLMKVEGLTIYHVKSHLQKYRTARYRP 317
             K R+RWT +LHE FVE VN+LGG+++ATPK +LK M  +GLTI+HVKSHLQKYR A+Y P
Sbjct:   192 KTRIRWTQDLHEKFVECVNRLGGADKATPKAILKRMDSDGLTIFHVKSHLQKYRIAKYMP 251

Query:   318 DSSEGSSEKRLTPLEEISSLDLKTGIEITEALRLQMEVQKRLHEQLEV 365
             +S EG  EKR    +E+S LD +TG++I EAL+LQ++VQ+ LHEQLE+
Sbjct:   252 ESQEGKFEKRACA-KELSQLDTRTGVQIKEALQLQLDVQRHLHEQLEI 298

GO:0005634 "nucleus" evidence=ISM

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

GO:0006355 "regulation of transcription, DNA-dependent" evidence=TAS

TAIR|locus:2095933 MYR2 [Arabidopsis thaliana (taxid:3702)]

 Score = 289 (106.8 bits), Expect = 1.8e-25, P = 1.8e-25
 Identities = 62/123 (50%), Positives = 85/123 (69%)

Query:   258 KPRMRWTPELHEAFVEAVNQLGGSERATPKGVLKLMKVEGLTIYHVKSHLQKYRTARYRP 317
             KPR++WTP+LHE F+EAVNQLGG+++ATPK ++K+M + GLT+YH+KSHLQKYR ++   
Sbjct:    45 KPRLKWTPDLHERFIEAVNQLGGADKATPKTIMKVMGIPGLTLYHLKSHLQKYRLSKNLN 104

Query:   318 DSSEGSSEK--------RLTP-LEEISSLDLKTGIE------ITEALRLQMEVQKRLHEQ 362
               +  S  K          TP  +EI S +L  G +      I EAL++Q+EVQ+RLHEQ
Sbjct:   105 GQANNSFNKIGIMTMMEEKTPDADEIQSENLSIGPQPNKNSPIGEALQMQIEVQRRLHEQ 164

Query:   363 LEV 365
             LEV
Sbjct:   165 LEV 167

GO:0005634 "nucleus" evidence=ISM

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

TAIR|locus:2093726 AT3G24120 [Arabidopsis thaliana (taxid:3702)]

 Score = 283 (104.7 bits), Expect = 7.6e-25, P = 7.6e-25
 Identities = 61/119 (51%), Positives = 81/119 (68%)

Query:   258 KPRMRWTPELHEAFVEAVNQLGGSERATPKGVLKLMKVEGLTIYHVKSHLQKYRTARYR- 316
             KPR+RWT ELHE FV+AV QLGG ++ATPK +++ M V+GLT+YH+KSHLQK+R  R   
Sbjct:    41 KPRLRWTTELHERFVDAVTQLGGPDKATPKTIMRTMGVKGLTLYHLKSHLQKFRLGRQAG 100

Query:   317 PDSSEGSS------EKRLTPLEEISSLDL-----KTGIEITEALRLQMEVQKRLHEQLE 364
              +S+E S       E + T     SS+ +       G ++TEALR QMEVQ+RLH+QLE
Sbjct:   101 KESTENSKDASCVGESQDTGSSSTSSMRMAQQEQNEGYQVTEALRAQMEVQRRLHDQLE 159

GO:0005634 "nucleus" evidence=ISM

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

GO:0006355 "regulation of transcription, DNA-dependent" evidence=TAS

GO:0000394 "RNA splicing, via endonucleolytic cleavage and ligation" evidence=RCA

GO:0009086 "methionine biosynthetic process" evidence=RCA

GO:0010048 "vernalization response" evidence=RCA

GO:0048573 "photoperiodism, flowering" evidence=RCA

TAIR|locus:2172394 MYR1 "myb-related protein 1" [Arabidopsis thaliana (taxid:3702)]

 Score = 282 (104.3 bits), Expect = 9.7e-25, P = 9.7e-25
 Identities = 61/123 (49%), Positives = 84/123 (68%)

Query:   258 KPRMRWTPELHEAFVEAVNQLGGSERATPKGVLKLMKVEGLTIYHVKSHLQKYRTARYRP 317
             KPR++WTP+LHE FVEAVNQLGG ++ATPK ++K+M + GLT+YH+KSHLQKYR ++   
Sbjct:    45 KPRLKWTPDLHERFVEAVNQLGGGDKATPKTIMKVMGIPGLTLYHLKSHLQKYRLSKNLN 104

Query:   318 DSSEGSSEKR--LTPLEE-------ISSLDLKTG------IEITEALRLQMEVQKRLHEQ 362
               +  S  K   +T +EE         S  L  G      + I++AL++Q+EVQ+RLHEQ
Sbjct:   105 GQANSSLNKTSVMTMVEENPPEVDESHSESLSIGPQPSMNLPISDALQMQIEVQRRLHEQ 164

Query:   363 LEV 365
             LEV
Sbjct:   165 LEV 167

GO:0005634 "nucleus" evidence=ISM

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	365
TIGR01557	57	TIGR01557, myb_SHAQKYF, myb-like DNA-binding domai	2e-23
PLN03162	526	PLN03162, PLN03162, golden-2 like transcription fa	5e-11
pfam14379	51	pfam14379, Myb_CC_LHEQLE, MYB-CC type transfactor,	4e-10
pfam00249	47	pfam00249, Myb_DNA-binding, Myb-like DNA-binding d	3e-08

>gnl|CDD|130620 TIGR01557, myb_SHAQKYF, myb-like DNA-binding domain, SHAQKYF class

 Score = 91.3 bits (227), Expect = 2e-23
 Identities = 32/55 (58%), Positives = 42/55 (76%)

Query: 258 KPRMRWTPELHEAFVEAVNQLGGSERATPKGVLKLMKVEGLTIYHVKSHLQKYRT 312
           KPR+ WT +LH+ F++AV +LGG + ATPK +L+LM V+GLT   V SHLQKYR 
Sbjct: 1   KPRVVWTEDLHDRFLQAVQKLGGPDWATPKRILELMVVDGLTRDQVASHLQKYRL 55

This model describes a DNA-binding domain restricted to (but common in) plant proteins, many of which also contain a response regulator domain. The domain appears related to the Myb-like DNA-binding domain described by pfam00249. It is distinguished in part by a well-conserved motif SH[AL]QKY[RF] at the C-terminal end of the motif. Length = 57

>gnl|CDD|178707 PLN03162, PLN03162, golden-2 like transcription factor; Provisional

 Score = 63.3 bits (153), Expect = 5e-11
 Identities = 35/70 (50%), Positives = 47/70 (67%), Gaps = 3/70 (4%)

Query: 247 TPSASANNAPAKPRMR--WTPELHEAFVEAVNQLGGSERATPKGVLKLMKVEGLTIYHVK 304
           +P +  N AP K + +  WTPELH  FV AV QLG  E+A P  +L+LM V+ LT +++ 
Sbjct: 222 SPKSCKNAAPGKKKAKVDWTPELHRRFVHAVEQLG-VEKAFPSRILELMGVQCLTRHNIA 280

Query: 305 SHLQKYRTAR 314
           SHLQKYR+ R
Sbjct: 281 SHLQKYRSHR 290

Length = 526

>gnl|CDD|206547 pfam14379, Myb_CC_LHEQLE, MYB-CC type transfactor, LHEQLE motif

 Score = 54.6 bits (132), Expect = 4e-10
 Identities = 21/24 (87%), Positives = 24/24 (100%)

Query: 342 GIEITEALRLQMEVQKRLHEQLEV 365
           G++ITEALRLQMEVQ+RLHEQLEV
Sbjct: 1   GMQITEALRLQMEVQRRLHEQLEV 24

This family is found towards the C-terminus of Myb-CC type transcription factors, and carries a highly conserved LHEQLE sequence motif. Length = 51

>gnl|CDD|215818 pfam00249, Myb_DNA-binding, Myb-like DNA-binding domain

 Score = 49.1 bits (118), Expect = 3e-08
 Identities = 15/52 (28%), Positives = 20/52 (38%), Gaps = 5/52 (9%)

Query: 260 RMRWTPELHEAFVEAVNQLGGSERATPKGVLKLMKVEGLTIYHVKSHLQKYR 311
           R  WTPE  E  +EAV + G         + K +   G T    K+    Y 
Sbjct: 1   RGPWTPEEDELLIEAVKKHGNGN---WSKIAKHLP--GRTDNQCKNRWNNYL 47

This family contains the DNA binding domains from Myb proteins, as well as the SANT domain family. Length = 47

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	365
PLN03162	526	golden-2 like transcription factor; Provisional	99.9
TIGR01557	57	myb_SHAQKYF myb-like DNA-binding domain, SHAQKYF c	99.85
PF14379	51	Myb_CC_LHEQLE: MYB-CC type transfactor, LHEQLE mot	98.93
PF00249	48	Myb_DNA-binding: Myb-like DNA-binding domain; Inte	97.37
smart00426	68	TEA TEA domain.	88.35

>PLN03162 golden-2 like transcription factor; Provisional

Probab=99.90  E-value=3.8e-24  Score=211.89  Aligned_cols=66  Identities=47%  Similarity=0.728  Sum_probs=61.1

Q ss_pred             CCCCCCCCcccChHHHHHHHHHHHHhCCCCCCChHHHHhhcCCCCCCHHHHHHHhhhhhhcccCCCC
Q 017799          253 NNAPAKPRMRWTPELHEAFVEAVNQLGGSERATPKGVLKLMKVEGLTIYHVKSHLQKYRTARYRPDS  319 (365)
Q Consensus       253 ~~~~~K~RlrWT~eLH~rFV~Av~~LGG~~kAtPK~IL~lM~v~gLT~~hVkSHLQKYR~~~~~~~~  319 (365)
                      +...+|+||+||+|||+|||+||++|| .+|||||+||++|+|+|||++||||||||||+.+++...
T Consensus       230 ~~g~KKpRLrWTpELH~rFVeAV~qLG-~dKATPK~ILelMnV~GLTRenVKSHLQKYRl~rk~l~~  295 (526)
T PLN03162        230 APGKKKAKVDWTPELHRRFVHAVEQLG-VEKAFPSRILELMGVQCLTRHNIASHLQKYRSHRRHLAA  295 (526)
T ss_pred             CCCCCCCcccCCHHHHHHHHHHHHHhC-cCccchHHHHHHcCCCCcCHHHHHHHHHHHHHhcccccc
Confidence            345689999999999999999999999 699999999999999999999999999999999886543

>TIGR01557 myb_SHAQKYF myb-like DNA-binding domain, SHAQKYF class

Probab=99.85  E-value=1.6e-21  Score=148.11  Aligned_cols=56  Identities=57%  Similarity=0.952  Sum_probs=54.3

Q ss_pred             CCCcccChHHHHHHHHHHHHhCCCCCCChHHHHhhcCCCCCCHHHHHHHhhhhhhc
Q 017799          258 KPRMRWTPELHEAFVEAVNQLGGSERATPKGVLKLMKVEGLTIYHVKSHLQKYRTA  313 (365)
Q Consensus       258 K~RlrWT~eLH~rFV~Av~~LGG~~kAtPK~IL~lM~v~gLT~~hVkSHLQKYR~~  313 (365)
                      |+|++||+|+|++|++||++||+.+.|+||.|+++|++++||+.||+|||||||+.
T Consensus         1 k~r~~WT~eeh~~Fl~ai~~~G~g~~a~pk~I~~~~~~~~lT~~qV~SH~QKy~~k   56 (57)
T TIGR01557         1 KPRVVWTEDLHDRFLQAVQKLGGPDWATPKRILELMVVDGLTRDQVASHLQKYRLK   56 (57)
T ss_pred             CCCCCCCHHHHHHHHHHHHHhCCCcccchHHHHHHcCCCCCCHHHHHHHHHHHHcc
Confidence            78999999999999999999998899999999999999999999999999999985

This model describes a DNA-binding domain restricted to (but common in) plant proteins, many of which also contain a response regulator domain. The domain appears related to the Myb-like DNA-binding domain described by Pfam model pfam00249. It is distinguished in part by a well-conserved motif SH[AL]QKY[RF] at the C-terminal end of the motif.

>PF14379 Myb_CC_LHEQLE: MYB-CC type transfactor, LHEQLE motif

Probab=98.93  E-value=4e-10  Score=84.80  Aligned_cols=24  Identities=83%  Similarity=1.196  Sum_probs=22.8

Q ss_pred             CcChHHHHHHHHHHhhhhhhhhcC
Q 017799          342 GIEITEALRLQMEVQKRLHEQLEV  365 (365)
Q Consensus       342 ~~~itEaLr~QmevQr~LhEQLEv  365 (365)
                      |++|+||||+||||||||||||||
T Consensus         1 g~~i~EALr~QmEvQrrLhEQLEv   24 (51)
T PF14379_consen    1 GMQITEALRMQMEVQRRLHEQLEV   24 (51)
T ss_pred             CCcHHHHHHHHHHHHHHHHHHHHH
Confidence            578999999999999999999996

>PF00249 Myb_DNA-binding: Myb-like DNA-binding domain; InterPro: IPR014778 The retroviral oncogene v-myb, and its cellular counterpart c-myb, encode nuclear DNA-binding proteins

Probab=97.37  E-value=0.00038  Score=50.09  Aligned_cols=48  Identities=33%  Similarity=0.418  Sum_probs=41.3

Q ss_pred             CcccChHHHHHHHHHHHHhCCCCCCChHHHHhhcCCCCCCHHHHHHHhhhhh
Q 017799          260 RMRWTPELHEAFVEAVNQLGGSERATPKGVLKLMKVEGLTIYHVKSHLQKYR  311 (365)
Q Consensus       260 RlrWT~eLH~rFV~Av~~LGG~~kAtPK~IL~lM~v~gLT~~hVkSHLQKYR  311 (365)
                      |..||+|=+++|++||.++|. +  .-+.|.+.|+ .|-|..++++|.++|+
T Consensus         1 r~~Wt~eE~~~l~~~v~~~g~-~--~W~~Ia~~~~-~~Rt~~qc~~~~~~~~   48 (48)
T PF00249_consen    1 RGPWTEEEDEKLLEAVKKYGK-D--NWKKIAKRMP-GGRTAKQCRSRYQNLL   48 (48)
T ss_dssp             S-SS-HHHHHHHHHHHHHSTT-T--HHHHHHHHHS-SSSTHHHHHHHHHHHT
T ss_pred             CCCCCHHHHHHHHHHHHHhCC-c--HHHHHHHHcC-CCCCHHHHHHHHHhhC
Confidence            568999999999999999993 2  6788988888 7999999999999985

These belong to the SANT domain family that specifically recognise the sequence YAAC(G/T)G [, ]. In myb, one of the most conserved regions consisting of three tandem repeats has been shown to be involved in DNA-binding [].; PDB: 1X41_A 2XAF_B 2XAG_B 2XAH_B 2UXN_B 2Y48_B 2XAQ_B 2X0L_B 2IW5_B 2XAJ_B ....

>smart00426 TEA TEA domain

Probab=88.35  E-value=0.59  Score=37.62  Aligned_cols=47  Identities=28%  Similarity=0.333  Sum_probs=29.8

Q ss_pred             ccChHHHHHHHHHHHHhCCCCCCChHHHHhh--c-C-----------CCC--CCHHHHHHHhhh
Q 017799          262 RWTPELHEAFVEAVNQLGGSERATPKGVLKL--M-K-----------VEG--LTIYHVKSHLQK  309 (365)
Q Consensus       262 rWT~eLH~rFV~Av~~LGG~~kAtPK~IL~l--M-~-----------v~g--LT~~hVkSHLQK  309 (365)
                      .|.++|-..|++|+...- +....+-.+...  | +           ..|  -|..+|.||||.
T Consensus         5 vWp~~lE~Af~~aL~~~~-~~g~~kik~~~r~k~~gRNelIs~YI~~~tGk~Rt~KQVsShIQv   67 (68)
T smart00426        5 VWSPDIEQAFQEALAIYP-PCGRRKIILSDEGKMYGRNELIARYIKLRTGKTRTRKQVSSHIQV   67 (68)
T ss_pred             cCcHHHHHHHHHHHHHcC-ccCcccchhhhcCcccchhHHHHHHHHHHhCCccchhhhcchhee
Confidence            699999999999998776 222111122211  1 0           133  688889999984

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	365
1irz_A	64	Solution Structure Of Arr10-B Belonging To The Garp		6e-10

>pdb|1IRZ|A Chain A, Solution Structure Of Arr10-B Belonging To The Garp Family Of Plant Myb-Related Dna Binding Motifs Of The Arabidopsis Response Regulators Length = 64

Iteration: 1
 Score = 61.6 bits (148), Expect = 6e-10,   Method: Composition-based stats.
 Identities = 32/56 (57%), Positives = 39/56 (69%), Gaps = 1/56 (1%)
Query: 258 KPRMRWTPELHEAFVEAVNQLGGSERATPKGVLKLMKVEGLTIYHVKSHLQKYRTA 313
           KPR+ WT ELH  F+ AV+ LG  ERA PK +L LM V+ LT  +V SHLQK+R A
Sbjct: 5   KPRVLWTHELHNKFLAAVDHLG-VERAVPKKILDLMNVDKLTRENVASHLQKFRVA 59

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	365
1irz_A	64	ARR10-B; helix-turn-helix, DNA binding protein; NM	2e-26

>1irz_A ARR10-B; helix-turn-helix, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: a.4.1.11 Length = 64

 Score = 99.2 bits (247), Expect = 2e-26
 Identities = 33/63 (52%), Positives = 41/63 (65%), Gaps = 1/63 (1%)

Query: 255 APAKPRMRWTPELHEAFVEAVNQLGGSERATPKGVLKLMKVEGLTIYHVKSHLQKYRTAR 314
           A  KPR+ WT ELH  F+ AV+ LG  ERA PK +L LM V+ LT  +V SHLQK+R A 
Sbjct: 2   AQKKPRVLWTHELHNKFLAAVDHLGV-ERAVPKKILDLMNVDKLTRENVASHLQKFRVAL 60

Query: 315 YRP 317
            + 
Sbjct: 61  KKV 63

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	365
1irz_A	64	ARR10-B; helix-turn-helix, DNA binding protein; NM	99.95
2yus_A	79	SWI/SNF-related matrix-associated actin- dependent	92.59
2yum_A	75	ZZZ3 protein, zinc finger ZZ-type-containing prote	92.59
2cu7_A	72	KIAA1915 protein; nuclear protein, SANT domain, DN	91.42
1x41_A	60	Transcriptional adaptor 2-like, isoform B; transcr	85.89
2hzd_A	82	Transcriptional enhancer factor TEF-1; DNA-binding	84.86
2cqq_A	72	RSGI RUH-037, DNAJ homolog subfamily C member 1; m	82.01
2cqr_A	73	RSGI RUH-043, DNAJ homolog subfamily C member 1; m	80.51

>1irz_A ARR10-B; helix-turn-helix, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: a.4.1.11

Probab=99.95  E-value=2.9e-29  Score=193.86  Aligned_cols=61  Identities=54%  Similarity=0.822  Sum_probs=58.1

Q ss_pred             CCCCCCcccChHHHHHHHHHHHHhCCCCCCChHHHHhhcCCCCCCHHHHHHHhhhhhhcccC
Q 017799          255 APAKPRMRWTPELHEAFVEAVNQLGGSERATPKGVLKLMKVEGLTIYHVKSHLQKYRTARYR  316 (365)
Q Consensus       255 ~~~K~RlrWT~eLH~rFV~Av~~LGG~~kAtPK~IL~lM~v~gLT~~hVkSHLQKYR~~~~~  316 (365)
                      +.+|+||+||+|||++||+||++|| .++||||+||++|+|+|||++||||||||||+..+|
T Consensus         2 ~~~k~r~~WT~elH~~Fv~Av~~LG-~~~AtPk~Il~~M~v~gLT~~~VkSHLQKYR~~l~r   62 (64)
T 1irz_A            2 AQKKPRVLWTHELHNKFLAAVDHLG-VERAVPKKILDLMNVDKLTRENVASHLQKFRVALKK   62 (64)
T ss_dssp             CCCCSSCSSCHHHHHHHHHHHHHHC-TTTCCHHHHHHHHCCTTCCHHHHHHHHHHHHHHHHS
T ss_pred             CCCCCCCcCCHHHHHHHHHHHHHhC-CCCCCcHHHHHHcCCCCCCHHHHHHHHHHHHHHHHc
Confidence            4589999999999999999999999 699999999999999999999999999999998765

>2yus_A SWI/SNF-related matrix-associated actin- dependent regulator of chromatin subfamily...; SWI/SNF complex 155 kDa subunit, BRG1-associated factor 155; NMR {Homo sapiens}

Probab=92.59  E-value=0.47  Score=37.19  Aligned_cols=48  Identities=17%  Similarity=0.139  Sum_probs=39.3

Q ss_pred             CCCCcccChHHHHHHHHHHHHhCCCCCCChHHHHhhcCCCCCCHHHHHHHhhhh
Q 017799          257 AKPRMRWTPELHEAFVEAVNQLGGSERATPKGVLKLMKVEGLTIYHVKSHLQKY  310 (365)
Q Consensus       257 ~K~RlrWT~eLH~rFV~Av~~LGG~~kAtPK~IL~lM~v~gLT~~hVkSHLQKY  310 (365)
                      ...+-.||+|=+++|++||+.+|+-    =+.|-+.|  ++-|..+++.|.++|
T Consensus        15 ~~~~~~WT~eEd~~Ll~~v~~~G~~----W~~IA~~v--~~RT~~qcr~r~~~~   62 (79)
T 2yus_A           15 ASAGREWTEQETLLLLEALEMYKDD----WNKVSEHV--GSRTQDECILHFLRL   62 (79)
T ss_dssp             SCCSCCCCHHHHHHHHHHHHHSSSC----HHHHHHHH--SSCCHHHHHHHHTTS
T ss_pred             cccCCCcCHHHHHHHHHHHHHhCCC----HHHHHHHc--CCCCHHHHHHHHHHh
Confidence            3446789999999999999999942    35666665  489999999999987

>2yum_A ZZZ3 protein, zinc finger ZZ-type-containing protein 3; transcription, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=92.59  E-value=0.24  Score=37.57  Aligned_cols=56  Identities=18%  Similarity=0.201  Sum_probs=41.9

Q ss_pred             CCCCcccChHHHHHHHHHHHHhCCCCCCChH---HHHhhcCCCCCCHHHHHHHhhhhhhccc
Q 017799          257 AKPRMRWTPELHEAFVEAVNQLGGSERATPK---GVLKLMKVEGLTIYHVKSHLQKYRTARY  315 (365)
Q Consensus       257 ~K~RlrWT~eLH~rFV~Av~~LGG~~kAtPK---~IL~lM~v~gLT~~hVkSHLQKYR~~~~  315 (365)
                      ...+-.||+|=+++|++||..+| .+...|+   .|-+.  |+|-|..+|+.|-|||-....
T Consensus         5 ~~~~~~WT~eEd~~L~~~v~~~g-~~~~~~~~W~~IA~~--~~~Rt~~qcr~r~~~~l~~~~   63 (75)
T 2yum_A            5 SSGNQLWTVEEQKKLEQLLIKYP-PEEVESRRWQKIADE--LGNRTAKQVASQVQKYFIKLT   63 (75)
T ss_dssp             CCCSSCCCHHHHHHHHHHHHHSC-CCSCHHHHHHHHHHH--HSSSCHHHHHHHHHHHHGGGS
T ss_pred             CCCCCCCCHHHHHHHHHHHHHhC-CCCCCcccHHHHHHH--hCCCCHHHHHHHHHHHHHHHH
Confidence            34455899999999999999999 3332233   34344  478999999999999976543

>2cu7_A KIAA1915 protein; nuclear protein, SANT domain, DNA binding, regulation of transcription, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.3

Probab=91.42  E-value=0.57  Score=35.46  Aligned_cols=53  Identities=25%  Similarity=0.382  Sum_probs=42.0

Q ss_pred             CCCCcccChHHHHHHHHHHHHhCCCCCCChHHHHhhcCCCCCCHHHHHHHhhhhhhccc
Q 017799          257 AKPRMRWTPELHEAFVEAVNQLGGSERATPKGVLKLMKVEGLTIYHVKSHLQKYRTARY  315 (365)
Q Consensus       257 ~K~RlrWT~eLH~rFV~Av~~LGG~~kAtPK~IL~lM~v~gLT~~hVkSHLQKYR~~~~  315 (365)
                      ...+-.||+|=++.|++||.++|-    .=+.|-+.  ++|-|-.+||.|.++|-..+.
T Consensus         6 ~~~~~~WT~eEd~~l~~~~~~~G~----~W~~Ia~~--~~~Rt~~q~k~r~~~~l~~~~   58 (72)
T 2cu7_A            6 SGYSVKWTIEEKELFEQGLAKFGR----RWTKISKL--IGSRTVLQVKSYARQYFKNKV   58 (72)
T ss_dssp             SSCCCCCCHHHHHHHHHHHHHTCS----CHHHHHHH--HSSSCHHHHHHHHHHHHHHHS
T ss_pred             CcCCCCCCHHHHHHHHHHHHHHCc----CHHHHHHH--cCCCCHHHHHHHHHHHHHHHH
Confidence            455668999999999999999993    33555554  479999999999999865543

>1x41_A Transcriptional adaptor 2-like, isoform B; transcriptional adaptor protein2, transcriptional activation, MYB domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.1

Probab=85.89  E-value=1.1  Score=32.77  Aligned_cols=50  Identities=28%  Similarity=0.319  Sum_probs=39.5

Q ss_pred             CCCCcccChHHHHHHHHHHHHhC-CCCCCChHHHHhhcCCCCCCHHHHHHHhhhhhh
Q 017799          257 AKPRMRWTPELHEAFVEAVNQLG-GSERATPKGVLKLMKVEGLTIYHVKSHLQKYRT  312 (365)
Q Consensus       257 ~K~RlrWT~eLH~rFV~Av~~LG-G~~kAtPK~IL~lM~v~gLT~~hVkSHLQKYR~  312 (365)
                      .-.|-.||+|=.+++++||.++| +-    =+.|-+.|  +|-|-.+++.|-++|-.
T Consensus         5 ~~~~~~WT~eED~~L~~~v~~~G~~~----W~~Ia~~~--~~Rt~~qcr~r~~~~l~   55 (60)
T 1x41_A            5 SSGDPSWTAQEEMALLEAVMDCGFGN----WQDVANQM--CTKTKEECEKHYMKYFS   55 (60)
T ss_dssp             CCCCSSSCHHHHHHHHHHHHHTCTTC----HHHHHHHH--TTSCHHHHHHHHHHHTT
T ss_pred             CCCCCCCCHHHHHHHHHHHHHHCcCc----HHHHHHHh--CCCCHHHHHHHHHHHcc
Confidence            34566799999999999999999 32    34555555  68999999999888754

>2hzd_A Transcriptional enhancer factor TEF-1; DNA-binding, helix-turn-helix, gene regulation; NMR {Homo sapiens}

Probab=84.86  E-value=1.2  Score=35.89  Aligned_cols=59  Identities=22%  Similarity=0.288  Sum_probs=38.4

Q ss_pred             CCCCcccChHHHHHHHHHHHHhCCCCCCChHHHH-h-hc-C-------------CCCCCHHHHHHHhhhhhhcccC
Q 017799          257 AKPRMRWTPELHEAFVEAVNQLGGSERATPKGVL-K-LM-K-------------VEGLTIYHVKSHLQKYRTARYR  316 (365)
Q Consensus       257 ~K~RlrWT~eLH~rFV~Av~~LGG~~kAtPK~IL-~-lM-~-------------v~gLT~~hVkSHLQKYR~~~~~  316 (365)
                      ++..-+|.++|-..|++|++..--....+-+ +. + .| |             -.--|+.+|.||||--|..+.+
T Consensus         3 ~~~e~vW~~~lE~aF~eaL~~yp~~g~~k~~-ls~~gk~~gRNelIs~yI~~~tGk~RtrKQVSShiQvlk~~~~~   77 (82)
T 2hzd_A            3 NDAEGVWSPDIEQSFQEALSIYPPCGRRKII-LSDEGKMYGRNELIARYIKLRTGKTRTRKQVSSHIQVLARRKSR   77 (82)
T ss_dssp             GGGSCCSCHHHHHHHHHHHHHSCSSSCCCCC-HHHHCCCCCTHHHHHHHHHHHHSCCCCSHHHHHHHHHHHHHHTT
T ss_pred             CCcCCcCCHHHHHHHHHHHHHcCCCCcccee-ecccccccchhHHHHHHHHHHHcccCCccchhHHHHHHHHHHhh
Confidence            3455689999999999999887622222221 10 0 11 1             1457889999999987765543

>2cqq_A RSGI RUH-037, DNAJ homolog subfamily C member 1; membrane protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.3

Probab=82.01  E-value=4.2  Score=31.35  Aligned_cols=48  Identities=17%  Similarity=0.355  Sum_probs=37.8

Q ss_pred             cccChHHHHHHHHHHHHhCCCCCCChHH---HHhhcCCCCCCHHHHHHHhhhhhhcc
Q 017799          261 MRWTPELHEAFVEAVNQLGGSERATPKG---VLKLMKVEGLTIYHVKSHLQKYRTAR  314 (365)
Q Consensus       261 lrWT~eLH~rFV~Av~~LGG~~kAtPK~---IL~lM~v~gLT~~hVkSHLQKYR~~~  314 (365)
                      -.||.|=+.+|+.|+..+++   -||.+   |-+.|   |-|..+|+.|-+++....
T Consensus         9 ~~WT~eE~k~fe~al~~~p~---~t~~RW~~IA~~l---gRt~~eV~~~y~~L~~d~   59 (72)
T 2cqq_A            9 PEWTEEDLSQLTRSMVKFPG---GTPGRWEKIAHEL---GRSVTDVTTKAKQLKDSV   59 (72)
T ss_dssp             CCCCHHHHHHHHHHHHHSCT---TCTTHHHHHHHHH---TSCHHHHHHHHHHHHHSC
T ss_pred             CCCCHHHHHHHHHHHHHCCC---CCCcHHHHHHHHh---CCCHHHHHHHHHHHHHhc
Confidence            36999999999999999983   34554   44555   689999999988876553

>2cqr_A RSGI RUH-043, DNAJ homolog subfamily C member 1; membrane protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.3

Probab=80.51  E-value=6.4  Score=30.40  Aligned_cols=51  Identities=12%  Similarity=0.108  Sum_probs=40.2

Q ss_pred             CCcccChHHHHHHHHHHHHhCCCCCCChHHHHhhcC-CCCCCHHHHHHHhhhhhh
Q 017799          259 PRMRWTPELHEAFVEAVNQLGGSERATPKGVLKLMK-VEGLTIYHVKSHLQKYRT  312 (365)
Q Consensus       259 ~RlrWT~eLH~rFV~Av~~LGG~~kAtPK~IL~lM~-v~gLT~~hVkSHLQKYR~  312 (365)
                      .+-.||.+=..+|++||..+|.   -+|..--++=. |+|-|-.+|+.|.+++..
T Consensus        17 ~~~~WT~eEd~~L~~al~~~g~---~~~~rW~~IA~~vpGRT~~qcr~Ry~~L~~   68 (73)
T 2cqr_A           17 AEEPWTQNQQKLLELALQQYPR---GSSDCWDKIARCVPSKSKEDCIARYKLLVS   68 (73)
T ss_dssp             SSCCCCHHHHHHHHHHHHHSCS---SSHHHHHHHGGGCSSSCHHHHHHHHHHHHS
T ss_pred             CCCCCCHHHHHHHHHHHHHcCC---CCCchHHHHHHHcCCCCHHHHHHHHHHHHH
Confidence            3446999999999999999992   37776554433 689999999999887653

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	365
d1irza_	64	a.4.1.11 (A:) Arr10-B {Thale cress (Arabidopsis th	2e-23

>d1irza_ a.4.1.11 (A:) Arr10-B {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} Length = 64

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: GARP response regulators
domain: Arr10-B
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

 Score = 89.6 bits (222), Expect = 2e-23
 Identities = 33/62 (53%), Positives = 41/62 (66%), Gaps = 1/62 (1%)

Query: 255 APAKPRMRWTPELHEAFVEAVNQLGGSERATPKGVLKLMKVEGLTIYHVKSHLQKYRTAR 314
           A  KPR+ WT ELH  F+ AV+ LG  ERA PK +L LM V+ LT  +V SHLQK+R A 
Sbjct: 2   AQKKPRVLWTHELHNKFLAAVDHLGV-ERAVPKKILDLMNVDKLTRENVASHLQKFRVAL 60

Query: 315 YR 316
            +
Sbjct: 61  KK 62

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	365
d1irza_	64	Arr10-B {Thale cress (Arabidopsis thaliana) [TaxId	99.93
d2cu7a1	65	MYSM1 (KIAA1915) {Human (Homo sapiens) [TaxId: 960	93.42
d1x41a1	47	Transcriptional adaptor 2-like, TADA2L, isoform b	90.68

>d1irza_ a.4.1.11 (A:) Arr10-B {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: GARP response regulators
domain: Arr10-B
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=99.93  E-value=1.1e-26  Score=177.51  Aligned_cols=61  Identities=54%  Similarity=0.809  Sum_probs=57.8

Q ss_pred             CCCCCCcccChHHHHHHHHHHHHhCCCCCCChHHHHhhcCCCCCCHHHHHHHhhhhhhcccC
Q 017799          255 APAKPRMRWTPELHEAFVEAVNQLGGSERATPKGVLKLMKVEGLTIYHVKSHLQKYRTARYR  316 (365)
Q Consensus       255 ~~~K~RlrWT~eLH~rFV~Av~~LGG~~kAtPK~IL~lM~v~gLT~~hVkSHLQKYR~~~~~  316 (365)
                      +.+|+|++||+|||++||+||++||+ ++|+||+|+++|+|+|||+.||+|||||||+.+.+
T Consensus         2 ~~kk~R~~WT~elH~~Fv~Av~~lG~-~~atpk~I~~~m~v~~lT~~qV~SHlQKYrl~l~k   62 (64)
T d1irza_           2 AQKKPRVLWTHELHNKFLAAVDHLGV-ERAVPKKILDLMNVDKLTRENVASHLQKFRVALKK   62 (64)
T ss_dssp             CCCCSSCSSCHHHHHHHHHHHHHHCT-TTCCHHHHHHHHCCTTCCHHHHHHHHHHHHHHHHS
T ss_pred             CCCCCCCCCCHHHHHHHHHHHHHhCc-cccchHHHHHHcCCCCCCHHHHHHHHHHHHHHHHh
Confidence            45899999999999999999999985 89999999999999999999999999999998765

>d2cu7a1 a.4.1.3 (A:8-72) MYSM1 (KIAA1915) {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: MYSM1 (KIAA1915)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=93.42  E-value=0.062  Score=38.14  Aligned_cols=50  Identities=26%  Similarity=0.421  Sum_probs=39.7

Q ss_pred             CcccChHHHHHHHHHHHHhCCCCCCChHHHHhhcCCCCCCHHHHHHHhhhhhhccc
Q 017799          260 RMRWTPELHEAFVEAVNQLGGSERATPKGVLKLMKVEGLTIYHVKSHLQKYRTARY  315 (365)
Q Consensus       260 RlrWT~eLH~rFV~Av~~LGG~~kAtPK~IL~lM~v~gLT~~hVkSHLQKYR~~~~  315 (365)
                      ..+||+|=++.|++||..+|.-    =..|-+.|  +|-|..+|++|.++|.....
T Consensus         2 ~~~WT~eEd~~l~~~~~~~G~~----W~~Ia~~~--~~Rt~~q~k~ry~~~~~~~~   51 (65)
T d2cu7a1           2 SVKWTIEEKELFEQGLAKFGRR----WTKISKLI--GSRTVLQVKSYARQYFKNKV   51 (65)
T ss_dssp             CCCCCHHHHHHHHHHHHHTCSC----HHHHHHHH--SSSCHHHHHHHHHHHHHHHS
T ss_pred             CCCCCHHHHHHHHHHHHHhcch----HHHHHHHc--CCCCHHHHHHHHHHHHHHHH
Confidence            3689999999999999999942    33554554  58999999999998865543

>d1x41a1 a.4.1.1 (A:8-54) Transcriptional adaptor 2-like, TADA2L, isoform b {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Homeodomain
domain: Transcriptional adaptor 2-like, TADA2L, isoform b
species: Human (Homo sapiens) [TaxId: 9606]

Probab=90.68  E-value=0.25  Score=33.40  Aligned_cols=44  Identities=30%  Similarity=0.320  Sum_probs=35.1

Q ss_pred             ccChHHHHHHHHHHHHhCCCCCCChHHHHhhcCCCCCCHHHHHHHhhhh
Q 017799          262 RWTPELHEAFVEAVNQLGGSERATPKGVLKLMKVEGLTIYHVKSHLQKY  310 (365)
Q Consensus       262 rWT~eLH~rFV~Av~~LGG~~kAtPK~IL~lM~v~gLT~~hVkSHLQKY  310 (365)
                      .||.|=++++++||.+.| ..  -=+.|-+.|+  |-|..+++.|-+||
T Consensus         3 ~Wt~eEd~~L~~~v~~~G-~~--nW~~Ia~~~~--~Rt~~Qcr~r~~~~   46 (47)
T d1x41a1           3 SWTAQEEMALLEAVMDCG-FG--NWQDVANQMC--TKTKEECEKHYMKY   46 (47)
T ss_dssp             SSCHHHHHHHHHHHHHTC-TT--CHHHHHHHHT--TSCHHHHHHHHHHH
T ss_pred             CCCHHHHHHHHHHHHHHC-Cc--cHHHHHHHcC--CCCHHHHHHHHHHh
Confidence            399999999999999999 11  2345555554  78999999999887