Citrus Sinensis ID: 017811

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-----
Protein Sequence
MEEVDGEPKSQAPGEVGESEIVTEDAAFVRGEPPQDGDGPPKVDSEVEVLHEKVTKQIIKEGHGQKPSKYSTCFLHYRAWAESTRHKFDDTWLEQQPLEMVLGKEKKEMTGLAIGVSSMKAGEHALLHVGWELGYGKEGSFSFPNVSPMADLVYEVVLIGFDETKEGKARSDMTVEERIGAADRRKMDGNALFKEEKLEEAMQQYEMAIAYMGDDFMFQLFGKYRDMALAVKNPCHLNMAACLLKLKRYEEAIGQCSLVLGEDENNVKALFRRGKARAELGQTDAAREDFLKAGKFAPEDKSIARELRLLAEHEKAVYKKQKEIYKGIFGPRPEPKQKKNWLIIFWQLLVSLVLGLFKRKRVKAE
Secondary Structure (PSIPRED)
ccccccccccccccccccccEEEEcccccccccccccccccccccEEEEccccEEEEEEEcccccccccccEEEEEEEEEEccccEEEcccccccccEEEEEccccccHHHHHHHHHccccccEEEEEEccccccccccccccccccccccEEEEEEEccccccccccccccccHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHcccccHHHHHHHHHHHHHcccHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccHHHHHHHHHHHHHHHHHHHHHccccc
Secondary Structure Prediction (SSPRO)
ccEEEHHHHHHHHHccccEEEEEEccHHcccccccccccccccEEEEEEccccEEEEEEEcccccccccccEEEEEEEEEEccccEEEcccccccccEEEEEccccccHHHHHHHHHHHccccEEEEEEccHHcccccccccccccccccEEEEEEEEEEcccccccccHccccHHHHHHHHHHHHHcccHHHHccHHHHHHHHHHHHHHHHHccccccccHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHccccccHHHHHHHHHHHHHcccHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHcccHHHHHccccccHHHcccHHHHHHHHHHHHHHHHHHccccc
Coil and Loop (DISEMBL)
meevdgepksqapgevgeseivtedaafvrgeppqdgdgppkvdsEVEVLHEKVTKQIIkeghgqkpskystCFLHYRAWAestrhkfddtwleqqplEMVLGKEKKEMTGLAIGVSSMKAGEHALLHVGwelgygkegsfsfpnvspmaDLVYEVVLIGfdetkegkarsdMTVEERIGAADRRKMDGNALFKEEKLEEAMQQYEMAIAYMGDDFMFQLFGKYRDMalavknpcHLNMAACLLKLKRYEEAIGQCslvlgedenNVKALFRRGKARAELGQTDAAREDFLkagkfapedKSIARELRLLAEHEKAVYKKQKEIYkgifgprpepkqkknWLIIFWQLLVSLVLGLFkrkrvkae
Flexible Loop (DISEMBL)
meevdgepksqapgevgeSEIVTEDAAFVrgeppqdgdgppkVDSEVEVLHEKVTKqiikeghgqkpskystCFLHYRAWAESTRHKFDDTWLEQQPLEMVLGKEKKEMTGLAIGVSSMKAGEHALLHVGWELGYGKEGSFSFPNVSPMADLVYEVVLIGFDetkegkarsdmtveerigaadrrkmdgnALFKEEKLEEAMQQYEMAIAYMGDDFMFQLFGKYRDMALAVKNPCHLNMAACLLKLKRYEEAIGQCslvlgedenNVKALFRRGKaraelgqtdaAREDFLkagkfapedkSIARELRLLAEHEKavykkqkeiykgifgprpepkqkKNWLIIFWQLLVSLVlglfkrkrvkae
Low Complexity Region (SEG)
MEEVDGEPKSQAPGEVGESEIVTEDAAFVRGEPPQDGDGPPKVDSEVEVLHEKVTKQIIKEGHGQKPSKYSTCFLHYRAWAESTRHKFDDTWLEQQPLEMVLGKEKKEMTGLAIGVSSMKAGEHALLHVGWELGYGKEGSFSFPNVSPMADLVYEVVLIGFDETKEGKARSDMTVEERIGAADRRKMDGNALFKEEKLEEAMQQYEMAIAYMGDDFMFQLFGKYRDMALAVKNPCHLNMAACLLKLKRYEEAIGQCSLVLGEDENNVKALFRRGKARAELGQTDAAREDFLKAGKFAPEDKSIARELRLLAEHEKAVYKKQKEIYKGIFGPRPEPKQKKNWLIIFWQLLVSLVLGLFKRKRVKAE
Disordered region (IsUnstruct)
********************************************************************KYSTCFLHYRAWAESTRHKFDDTWLEQQPLEMVLGKEKKEMTGLAIGVSSMKAGEHALLHVGWELGYGKEGSFSFPNVSPMADLVYEVVLIGFD***************************************MQQYEMAIAYMGDDFMFQLFGKYRDMALAVKNPCHLNMAACLLKLKRYEEAIGQCSLVLGEDENNVKALFRR******************************ARELRLLAEHEKAVYKKQKEIYKGIFGP******KKNWLIIFWQLLVSLVLGLFK*******
Disordered Region (DISOPRED)
MEEVDGEPKSQAP*EVG***************************SEVEVLHEKVTKQIIKEGHGQKPSKYSTCFLHYRAWAESTRHKFDDTWLEQQPLEMVLGKEKKEMTGLAIGVSSMKAGEHALLHVGWELGYGKEGSFSFPNVSPMADLVYEVVLIGFDETKEGKARSDMTVEERIGAADRRKMDGNALFKEEKLEEAMQQYEMAIAYMGDDFMFQ***K*RDMALAVKNPCHLNMAACLLKLKRYEEAIGQCSLVLGEDENNVKALFRRGKARAELGQTDAAREDFLKAGKFAPEDKSIARELRLLAEH*********EI********************FWQLLVSLVLGLF*RK*****
Disordered Region (DISEMBL)
*****************ESEIVTEDAAFVRG**************EVEVLHEKVTKQIIKEGHGQKPSKYSTCFLHYRAWAESTRHKFDDTWLEQQPLEMVLGKEKKEMTGLAIGVSSMKAGEHALLHVGWELGYGKEGSFSFPNVSPMADLVYEVVLIGFDETKEGKARSDMTVEERIGAADRRKMDGNALFKEEKLEEAMQQYEMAIAYMGDDFMFQLFGKYRDMALAVKNPCHLNMAACLLKLKRYEEAIGQCSLVLGEDENNVKALFRRGKARAELGQTDAAREDFLKAGKFAPEDKSIARELRLLAEHEKAVYKKQKEIYKGIFGPRPEPKQKKNWLIIFWQLLVSLVLGLFKRKRVKAE
Disordered Region (DISPRO)
MEEVDGEPKSQAPGEVGESEIVTEDAAFVRGEPPQDGDGPPKVDSEVEVLHEKVTKQIIKEGHGQKPSKYSTCFLHYRAWAESTRHKFDDTWLEQQPLEMVLGKEKKEMTGLAIGVSSMKAGEHALLHVGWELGYGKEGSFSFPNVSPMADLVYEVVLIGFDETKEGKARSDMTVEERIGAADRRKMDGNALFKEEKLEEAMQQYEMAIAYMGDDFMFQLFGKYRDMALAVKNPCHLNMAACLLKLKRYEEAIGQCSLVLGEDENNVKALFRRGKARAELGQTDAAREDFLKAGKFAPEDKSIARELRLLAEHEKAVYKKQKEIYKGIFGPRPEPKQKKNWLIIFWQLLVSLVLGLFKRKR****
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHiiiiiiii
Transmembrane Helix (HMMTOP)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHoooooooo
Transmembrane Helix (MEMSAT)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHiiiiiii
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHiiiiiiii
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MEEVDGEPKSQAPGEVGESEIVTEDAAFVRGEPPQDGDGPPKVDSEVEVLHEKVTKQIIKEGHGQKPSKYSTCFLHYRAWAESTRHKFDDTWLEQQPLEMVLGKEKKEMTGLAIGVSSMKAGEHALLHVGWELGYGKEGSFSFPNVSPMADLVYEVVLIGFDETKEGKARSDMTVEERIGAADRRKMDGNALFKEEKLEEAMQQYEMAIAYMGDDFMFQLFGKYRDMALAVKNPCHLNMAACLLKLKRYEEAIGQCSLVLGEDENNVKALFRRGKARAELGQTDAAREDFLKAGKFAPEDKSIARELRLLAEHEKAVYKKQKEIYKGIFGPRPEPKQKKNWLIIFWQLLVSLVLGLFKRKRVKAE
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	365	2.2.26 [Sep-21-2011]
Q9LDC0	365	Peptidyl-prolyl cis-trans	yes	no	0.953	0.953	0.757	1e-157
Q9FJL3	578	Peptidyl-prolyl cis-trans	no	no	0.769	0.486	0.341	2e-27
Q38931	551	Peptidyl-prolyl cis-trans	no	no	0.808	0.535	0.323	4e-27
Q43207	559	70 kDa peptidyl-prolyl is	N/A	no	0.758	0.495	0.327	6e-26
Q9QVC8	458	Peptidyl-prolyl cis-trans	yes	no	0.646	0.515	0.295	1e-22
P30416	458	Peptidyl-prolyl cis-trans	yes	no	0.586	0.467	0.309	1e-22
P0C1J7	385	FK506-binding protein 5 O	N/A	no	0.619	0.587	0.325	2e-22
Q9TRY0	459	Peptidyl-prolyl cis-trans	yes	no	0.586	0.466	0.304	3e-22
P27124	458	Peptidyl-prolyl cis-trans	yes	no	0.646	0.515	0.299	9e-22
Q02790	459	Peptidyl-prolyl cis-trans	yes	no	0.646	0.514	0.290	3e-21

>sp|Q9LDC0|FKB42_ARATH Peptidyl-prolyl cis-trans isomerase FKBP42 OS=Arabidopsis thaliana GN=FKBP42 PE=1 SV=1

 Score =  556 bits (1432), Expect = e-157,   Method: Compositional matrix adjust.
 Identities = 266/351 (75%), Positives = 307/351 (87%), Gaps = 3/351 (0%)

Query: 18  ESEIVTEDAAFVRGEPPQDGDGPPKVDSEVEVLHEKVTKQIIKEGHGQKPSKYSTCFLHY 77
           ESEIVTE +A V  EP Q+G+ PPKVDSE EVL EKV+KQIIKEGHG KPSKYSTCFLHY
Sbjct: 15  ESEIVTEGSAVVHSEPSQEGNVPPKVDSEAEVLDEKVSKQIIKEGHGSKPSKYSTCFLHY 74

Query: 78  RAWAESTRHKFDDTWLEQQPLEMVLGKEKKEMTGLAIGVSSMKAGEHALLHVGWELGYGK 137
           RAW ++++HKF+DTW EQQP+E+VLGKEKKE+ GLAIGV+SMK+GE AL+HVGWEL YGK
Sbjct: 75  RAWTKNSQHKFEDTWHEQQPIELVLGKEKKELAGLAIGVASMKSGERALVHVGWELAYGK 134

Query: 138 EGSFSFPNVSPMADLVYEVVLIGFDETKEGKARSDMTVEERIGAADRRKMDGNALFKEEK 197
           EG+FSFPNV PMADL+YEV +IGFDETKEGKARSDMTVEERIGAADRRKMDGN+LFKEEK
Sbjct: 135 EGNFSFPNVPPMADLLYEVEVIGFDETKEGKARSDMTVEERIGAADRRKMDGNSLFKEEK 194

Query: 198 LEEAMQQYEMAIAYMGDDFMFQLFGKYRDMALAVKNPCHLNMAACLLKLKRYEEAIGQCS 257
           LEEAMQQYEMAIAYMGDDFMFQL+GKY+DMALAVKNPCHLN+AACL+KLKRY+EAIG C+
Sbjct: 195 LEEAMQQYEMAIAYMGDDFMFQLYGKYQDMALAVKNPCHLNIAACLIKLKRYDEAIGHCN 254

Query: 258 LVLGEDENNVKALFRRGKARAELGQTDAAREDFLKAGKFAPEDKSIARELRLLAEHEKAV 317
           +VL E+E N KALFRRGKA+AELGQ D+AR+DF KA K+AP+DK+I RELR LAE EKA+
Sbjct: 255 IVLTEEEKNPKALFRRGKAKAELGQMDSARDDFRKAQKYAPDDKAIRRELRALAEQEKAL 314

Query: 318 YKKQKEIYKGIFGPRPEPKQKKN---WLIIFWQLLVSLVLGLFKRKRVKAE 365
           Y+KQKE+YKGIF  + E   K     WLI+ WQ  VSL   +F+R RVKA+
Sbjct: 315 YQKQKEMYKGIFKGKDEGGAKSKSLFWLIVLWQWFVSLFSRIFRRHRVKAD 365

PPIases accelerate the folding of proteins. It catalyzes the cis-trans isomerization of proline imidic peptide bonds in oligopeptides (By similarity). Modulates the uptake of MRP substrates into the vacuole; reduces metolachlor-GS (MOC-GS) and enhances 17-beta-estradiol 17-(beta-D-glucuronide) (E(2)17betaG) uptake. Regulates cell elongation and orientation. Functions as a positive regulator of PGP1-mediated auxin transport. Confers drug modulation of PGP1 efflux activity as interaction with NPA or flavonol quercetin prevents its physical and functional interaction with PGP1. Required for the proper localization of auxin-related ABCB transporters. Plays a role in brassinosteroid (BR) signaling pathway.
Arabidopsis thaliana (taxid: 3702)
EC: 5EC: .EC: 2EC: .EC: 1EC: .EC: 8

>sp|Q9FJL3|FKB65_ARATH Peptidyl-prolyl cis-trans isomerase FKBP65 OS=Arabidopsis thaliana GN=FKBP65 PE=1 SV=1

 Score =  123 bits (309), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 101/296 (34%), Positives = 148/296 (50%), Gaps = 15/296 (5%)

Query: 47  VEVLHE-KVTKQIIKEGHG-QKPSKYSTCFLHYRAWAESTRHKFDDTWLEQ--QPLEMVL 102
           VEV  + KV K+I+KEG G ++P++ +   L      +     F     E+  +P E  +
Sbjct: 274 VEVTDDRKVIKKILKEGEGYERPNEGAIVKLKLIGKLQDGTTVFVKKGHEEDEEPFEFKI 333

Query: 103 GKEKKEMTGLAIGVSSMKAGEHALLHVGWELGYGK-EGSFSFPNVSPMADLVYEVVLIGF 161
            +E+  + GL   V  MK GE AL+ +  E  +G  E       + P + + YEV L+ F
Sbjct: 334 DEEQV-IEGLEKAVMGMKKGEVALITISPEYAFGSSESKQELAVIPPNSTVYYEVELVSF 392

Query: 162 DETKEGKARSDMTVEERIGAADRRKMDGNALFKEEKLEEAMQQYEMAIAYMGDDFMF--Q 219
            + KE     DM  +ERI AA ++K +GN LFK  K   A ++YE  + Y+  D  F  +
Sbjct: 393 IKEKES---WDMNTQERIEAAGKKKEEGNVLFKAGKYARASKRYERGVKYIEYDSTFDEE 449

Query: 220 LFGKYRDMALAVKNPCHLNMAACLLKLKRYEEAIGQCSLVLGEDENNVKALFRRGKARAE 279
              K +D+ +A    C+LN AAC LKLK Y+EA    + VL  D  NVKA++RR  A  E
Sbjct: 450 EKKKSKDLKIA----CNLNDAACKLKLKDYKEAAKLSTKVLEMDSRNVKAMYRRAHAYLE 505

Query: 280 LGQTDAAREDFLKAGKFAPEDKSIARELRLLAEHEKAVYKKQKEIYKGIFGPRPEP 335
               D A  D  KA +  P++K +  E + L E  K   KK  + Y  +     EP
Sbjct: 506 TADLDLAELDIKKALEIDPDNKEVKIEYKKLKEKVKEYNKKDAKFYSNMLSKMLEP 561

PPIases accelerate the folding of proteins. It catalyzes the cis-trans isomerization of proline imidic peptide bonds in oligopeptides. Co-chaperone that negatively modulates thermotolerance by interacting with FKBP62 and decreasing the HSFA2-mediated accumulation of chaperones of the small-HSPs family. Plays a positive role in tolerance to intracellular acid stress by maintaining the pH homeostasis.

Arabidopsis thaliana (taxid: 3702)

EC: 5

EC: .

EC: 2

EC: .

EC: 1

EC: .

EC: 8

>sp|Q38931|FKB62_ARATH Peptidyl-prolyl cis-trans isomerase FKBP62 OS=Arabidopsis thaliana GN=FKBP62 PE=1 SV=2

 Score =  122 bits (307), Expect = 4e-27,   Method: Compositional matrix adjust.
 Identities = 103/318 (32%), Positives = 159/318 (50%), Gaps = 23/318 (7%)

Query: 30  RGEPPQDGDG--PPKVDSEV-----------EVLHE-KVTKQIIKEGHG-QKPSKYSTCF 74
           +G+P   G+G  PP    E+           EV  + KV K+++KEG G ++P++ +   
Sbjct: 235 KGKPASAGEGAVPPNATLEINLELVSWKTVSEVTDDNKVVKKVLKEGDGYERPNEGAVVK 294

Query: 75  LHYRA-WAESTRHKFDDTWLEQQPLEMVLGKEKKEMTGLAIGVSSMKAGEHALLHVGWEL 133
           +       + T          ++P E    +E+  + GL   V  MK GE AL+ +  E 
Sbjct: 295 VKLIGKLQDGTVFLKKGHGENEEPFEFKTDEEQV-VDGLDRAVMKMKKGEVALVTIDPEY 353

Query: 134 GYG-KEGSFSFPNVSPMADLVYEVVLIGFDETKEGKARSDMTVEERIGAADRRKMDGNAL 192
            +G  E       V P + + YEV L+ FD+ +E     DM  EE+I AA ++K +GN+ 
Sbjct: 354 AFGSNESQQELAVVPPNSTVTYEVDLLTFDKERES---WDMNTEEKIEAASKKKEEGNSK 410

Query: 193 FKEEKLEEAMQQYEMAIAYMGDDFMFQLFGKYRDMALAVKNPCHLNMAACLLKLKRYEEA 252
           FK  K   A ++YE A+ ++  D  F    + +  A A+K  C+LN AAC LKLK Y++A
Sbjct: 411 FKGGKYSLASKRYEKAVKFIEYDTSFS--EEEKKQAKALKVACNLNDAACKLKLKDYKQA 468

Query: 253 IGQCSLVLGEDENNVKALFRRGKARAELGQTDAAREDFLKAGKFAPEDKSIARELRLLAE 312
              C+ VL  +  NVKAL+RR +A  EL   D A  D  KA +  P ++ +  E + L E
Sbjct: 469 EKLCTKVLELESTNVKALYRRAQAYMELSDLDLAEFDVKKALEIDPNNREVKLEQKRLKE 528

Query: 313 HEKAVYKKQKEIYKGIFG 330
             K   KK+ + Y  +F 
Sbjct: 529 KMKEFNKKEAKFYGNMFA 546

PPIases accelerate the folding of proteins. It catalyzes the cis-trans isomerization of proline imidic peptide bonds in oligopeptides (By similarity). Co-chaperone that positively modulates thermotolerance by interacting with HSP90.1 and increasing the HSFA2-mediated accumulation of chaperones of the small-HSPs family.

Arabidopsis thaliana (taxid: 3702)

EC: 5

EC: .

EC: 2

EC: .

EC: 1

EC: .

EC: 8

>sp|Q43207|FKB70_WHEAT 70 kDa peptidyl-prolyl isomerase OS=Triticum aestivum GN=FKBP70 PE=1 SV=1

 Score =  118 bits (296), Expect = 6e-26,   Method: Compositional matrix adjust.
 Identities = 93/284 (32%), Positives = 142/284 (50%), Gaps = 7/284 (2%)

Query: 53  KVTKQIIKEGHG-QKPSKYSTCFLHYRAWAESTRHKFDDTWLEQQPLEMVLGKEKKEMTG 111
           K+ K+++KE  G ++P++ +   +      +           EQ+P E    +E   + G
Sbjct: 275 KILKKVLKEXEGYERPNEGAVVTVKITGKLQDGTVFLKKGHDEQEPFEFKTDEEAV-IEG 333

Query: 112 LAIGVSSMKAGEHALLHVGWELGYGKEGSFSFPNVSPMADLVYEVVLIGFDETKEGKARS 171
           L   V +MK GE AL+ +  E  YG   S     V P + ++YEV L+ F + KE     
Sbjct: 334 LDRAVLNMKKGEVALVTIPPEYAYGSTESKQDAIVPPNSTVIYEVELVSFVKDKES---W 390

Query: 172 DMTVEERIGAADRRKMDGNALFKEEKLEEAMQQYEMAIAYMGDDFMFQLFGKYRDMALAV 231
           D+   E+I AA  +K +GNALFK  K   A ++YE A  ++  D  F    K +   L +
Sbjct: 391 DLNNSEKIEAAGTKKEEGNALFKSGKYARASKRYEKAAKFIEYDTSFSEDEKKQSKQLKI 450

Query: 232 KNPCHLNMAACLLKLKRYEEAIGQCSLVLGEDENNVKALFRRGKARAELGQTDAAREDFL 291
              C+LN AAC LKLK Y++A   C+ VL  D  NVKAL+RR +A  +L   + A  D  
Sbjct: 451 T--CNLNNAACKLKLKDYKQAEKLCTKVLELDSRNVKALYRRAQAYTQLADLELAEVDIK 508

Query: 292 KAGKFAPEDKSIARELRLLAEHEKAVYKKQKEIYKGIFGPRPEP 335
           KA +  PE++ +    + L E  K + KK  + Y  +F    +P
Sbjct: 509 KALEIDPENRDVKLTYKTLKEKIKEINKKDAKFYSNMFSKMTKP 552

PPIases accelerate the folding of proteins during protein synthesis.

Triticum aestivum (taxid: 4565)

EC: 5

EC: .

EC: 2

EC: .

EC: 1

EC: .

EC: 8

>sp|Q9QVC8|FKBP4_RAT Peptidyl-prolyl cis-trans isomerase FKBP4 OS=Rattus norvegicus GN=Fkbp4 PE=1 SV=3

 Score =  107 bits (268), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 72/244 (29%), Positives = 128/244 (52%), Gaps = 8/244 (3%)

Query: 88  FDDTWLEQQPLEMVLGK-EKKEM-TGLAIGVSSMKAGEHALLHVGWELGYGKEGSFSFPN 145
           ++D   +Q+ L   +G+ E  ++  GL   +  M+ GEH+++++     +G  G   F  
Sbjct: 178 YNDRLFDQRELCFEVGEGESLDLPCGLEEAIQRMEKGEHSIVYLKPSYAFGSVGKERF-Q 236

Query: 146 VSPMADLVYEVVLIGFDETKEGKARSDMTVEERIGAADRRKMDGNALFKEEKLEEAMQQY 205
           + P A+L YEV L  F++    KA  +M  EE++  ++  K  G   FKE K ++A+ QY
Sbjct: 237 IPPHAELRYEVHLKSFEK---AKASWEMNSEEKLEQSNIVKERGTVYFKEGKYKQALLQY 293

Query: 206 EMAIAYMGDDFMFQLFGKYRDMALAVKNPCHLNMAACLLKLKRYEEAIGQCSLVLGEDEN 265
           +  ++++  ++     G+      A++   HLN+A C LKL+ +  AI  C+  L  D N
Sbjct: 294 KKIVSWL--EYESSFSGEEMQKVHALRLASHLNLAMCHLKLQAFSAAIESCNKALELDSN 351

Query: 266 NVKALFRRGKARAELGQTDAAREDFLKAGKFAPEDKSIARELRLLAEHEKAVYKKQKEIY 325
           N K LFRRG+A   +   D AR DF K  +  P +K+   +L +  +  +    ++K++Y
Sbjct: 352 NEKGLFRRGEAHLAVNDFDLARADFQKVLQLYPSNKAAKTQLAVCQQRTRRQLAREKKLY 411

Query: 326 KGIF 329
             +F
Sbjct: 412 ANMF 415

Immunophilin protein with PPIase and co-chaperone activities (By similarity). Component of unligated steroid receptors heterocomplexes through interaction with heat-shock protein 90 (HSP90) (By similarity). Plays a role in the intracellular trafficking of heterooligomeric forms of steroid hormone receptors between cytoplasm and nuclear compartments (By similarity). Acts also as a regulator of microtubule dynamics by inhibiting MAPT/TAU ability to promote microtubule assembly. The PPIase activity controls neuronal growth cones via regulation of TRPC1 channel opening.

Rattus norvegicus (taxid: 10116)

EC: 5

EC: .

EC: 2

EC: .

EC: 1

EC: .

EC: 8

>sp|P30416|FKBP4_MOUSE Peptidyl-prolyl cis-trans isomerase FKBP4 OS=Mus musculus GN=Fkbp4 PE=1 SV=5

 Score =  107 bits (267), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 68/220 (30%), Positives = 116/220 (52%), Gaps = 6/220 (2%)

Query: 110 TGLAIGVSSMKAGEHALLHVGWELGYGKEGSFSFPNVSPMADLVYEVVLIGFDETKEGKA 169
            GL   +  M+ GEH+++++     +G  G   F  + P A+L YEV L  F++ KE   
Sbjct: 202 CGLEEAIQRMEKGEHSIVYLKPSYAFGSVGKERF-QIPPHAELRYEVRLKSFEKAKES-- 258

Query: 170 RSDMTVEERIGAADRRKMDGNALFKEEKLEEAMQQYEMAIAYMGDDFMFQLFGKYRDMAL 229
             +M+  E++  ++  K  G A FKE K ++A+ QY+  ++++  +  F   G+      
Sbjct: 259 -WEMSSAEKLEQSNIVKERGTAYFKEGKYKQALLQYKKIVSWLEYESSFS--GEEMQKVH 315

Query: 230 AVKNPCHLNMAACLLKLKRYEEAIGQCSLVLGEDENNVKALFRRGKARAELGQTDAARED 289
           A++   HLN+A C LKL+ +  AI  C+  L  D NN K LFRRG+A   +   D AR D
Sbjct: 316 ALRLASHLNLAMCHLKLQAFSAAIESCNKALELDSNNEKGLFRRGEAHLAVNDFDLARAD 375

Query: 290 FLKAGKFAPEDKSIARELRLLAEHEKAVYKKQKEIYKGIF 329
           F K  +  P +K+   +L +  +  +    ++K++Y  +F
Sbjct: 376 FQKVLQLYPSNKAAKTQLAVCQQRTRRQLAREKKLYANMF 415

Immunophilin protein with PPIase and co-chaperone activities (By similarity). Component of unligated steroid receptors heterocomplexes through interaction with heat-shock protein 90 (HSP90) (By similarity). May play a role in the intracellular trafficking of heterooligomeric forms of steroid hormone receptors between cytoplasm and nuclear compartments (By similarity). The isomerase activity controls neuronal growth cones via regulation of TRPC1 channel opening (By similarity). Acts also as a regulator of microtubule dynamics by inhibiting MAPT/TAU ability to promote microtubule assembly.

Mus musculus (taxid: 10090)

EC: 5

EC: .

EC: 2

EC: .

EC: 1

EC: .

EC: 8

>sp|P0C1J7|FKBP5_RHIO9 FK506-binding protein 5 OS=Rhizopus delemar (strain RA 99-880 / ATCC MYA-4621 / FGSC 9543 / NRRL 43880) GN=FKBP5 PE=3 SV=1

 Score =  107 bits (266), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 79/243 (32%), Positives = 123/243 (50%), Gaps = 17/243 (6%)

Query: 54  VTKQIIKEGHGQKPSKYSTCFLHYRAWAESTRHKFDDTWLEQQPLEMVLGKEKKEMTGLA 113
           VTK+IIK G GQ+P   +   +HY A+   T  KFD +          L ++ K +    
Sbjct: 10  VTKRIIKAGLGQRPEPTNFVSVHYDAYLLDTSEKFDSSRDRNTEFTFQL-RDSKVIEAWE 68

Query: 114 IGVSSMKAGEHALLHVGWELGYGKEGSFSFPNVSPMADLVYEVVLIGFDETKEGKARSDM 173
           + + +M+ GE A +    + GYG +G      V P A L +EV LIGF E  +  +    
Sbjct: 69  LAIPTMQVGELAEIICTSDYGYGDQGRQYI--VPPRAQLRFEVELIGFWEKPKSAS---- 122

Query: 174 TVEERIGAADRRKMDGNALFKEEKLEEAMQQYEMAIAYMGD--DFMFQLFGKYRDMALAV 231
              ERI  A+++K +GNALFK + +E A+  Y     Y+ D  D   +   + R + +++
Sbjct: 123 ---ERIRLAEKKKNEGNALFKLDAIESALFAYRKGREYIQDLWDCEPEELEEARQLIVSI 179

Query: 232 KNPCHLNMAACLLKLKRYEEAIGQCSLVLGEDENNVKALFRRGKARAELGQTDAAREDFL 291
           +    LN+ AC LKLK Y+ AI  C   L  D   +KA +R G+A  E G  +++   F+
Sbjct: 180 Q----LNIGACHLKLKHYDHAIEVCQKALDRDMTKIKAYYRIGQAYMEKGDYESSLT-FI 234

Query: 292 KAG 294
           + G
Sbjct: 235 RIG 237

PPIases accelerate the folding of proteins. It catalyzes the cis-trans isomerization of proline imidic peptide bonds in oligopeptides.

Rhizopus delemar (strain RA 99-880 / ATCC MYA-4621 / FGSC 9543 / NRRL 43880) (taxid: 246409)

EC: 5

EC: .

EC: 2

EC: .

EC: 1

EC: .

EC: 8

>sp|Q9TRY0|FKBP4_BOVIN Peptidyl-prolyl cis-trans isomerase FKBP4 OS=Bos taurus GN=FKBP4 PE=1 SV=4

 Score =  106 bits (264), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 67/220 (30%), Positives = 117/220 (53%), Gaps = 6/220 (2%)

Query: 110 TGLAIGVSSMKAGEHALLHVGWELGYGKEGSFSFPNVSPMADLVYEVVLIGFDETKEGKA 169
            GL   +  M+ GEH+++++     +G  G   F  + P A+L YE+ L  F++ KE   
Sbjct: 202 CGLEKAIQRMEKGEHSIVYLKPRYAFGSAGKEKF-QIPPNAELKYEIHLKSFEKAKES-- 258

Query: 170 RSDMTVEERIGAADRRKMDGNALFKEEKLEEAMQQYEMAIAYMGDDFMFQLFGKYRDMAL 229
             +M+ EE++  +   K  G   FKE K ++A+ QY+  ++++  ++      +  + A 
Sbjct: 259 -WEMSSEEKLEQSTIVKERGTVYFKEGKYKQAVLQYKKIVSWL--EYESSFSDEDAEKAQ 315

Query: 230 AVKNPCHLNMAACLLKLKRYEEAIGQCSLVLGEDENNVKALFRRGKARAELGQTDAARED 289
           A++   HLN+A C LKL+ +  AI  C+  L  D NN K LFRRG+A   +   D AR D
Sbjct: 316 ALRLASHLNLAMCHLKLQAFSAAIENCNKALELDSNNEKGLFRRGEAHLAVNDFDLARAD 375

Query: 290 FLKAGKFAPEDKSIARELRLLAEHEKAVYKKQKEIYKGIF 329
           F K  +  P +K+   +L +  +  +   +K+K++Y  +F
Sbjct: 376 FQKVLQLYPSNKAAKAQLVVCQQRIRKQLEKEKKLYANMF 415

Immunophilin protein with PPIase and co-chaperone activities (By similarity). Component of unligated steroid receptors heterocomplexes through interaction with heat-shock protein 90 (HSP90) (By similarity). May play a role in the intracellular trafficking of heterooligomeric forms of steroid hormone receptors between cytoplasm and nuclear compartments (By similarity). The isomerase activity controls neuronal growth cones via regulation of TRPC1 channel opening (By similarity). Acts also as a regulator of microtubule dynamics by inhibiting MAPT/TAU ability to promote microtubule assembly.

Bos taurus (taxid: 9913)

EC: 5

EC: .

EC: 2

EC: .

EC: 1

EC: .

EC: 8

>sp|P27124|FKBP4_RABIT Peptidyl-prolyl cis-trans isomerase FKBP4 OS=Oryctolagus cuniculus GN=FKBP4 PE=1 SV=3

 Score =  104 bits (260), Expect = 9e-22,   Method: Compositional matrix adjust.
 Identities = 73/244 (29%), Positives = 127/244 (52%), Gaps = 8/244 (3%)

Query: 88  FDDTWLEQQPLEMVLGK-EKKEM-TGLAIGVSSMKAGEHALLHVGWELGYGKEGSFSFPN 145
           + D   +Q+ L   +G+ E  ++  GL   +  M+ GEH++L++     +G  G   F  
Sbjct: 178 YKDRLFDQRELRFEVGEGESLDLPCGLEKAIQRMEKGEHSILYLKPSYAFGNAGKEKF-Q 236

Query: 146 VSPMADLVYEVVLIGFDETKEGKARSDMTVEERIGAADRRKMDGNALFKEEKLEEAMQQY 205
           + P A+L YEV L  F++ KE     +M+ EE++  +   K  G   FKE K ++A+ QY
Sbjct: 237 IPPYAELKYEVHLKSFEKAKES---WEMSSEEKLEQSAIVKERGTVYFKEGKYKQALLQY 293

Query: 206 EMAIAYMGDDFMFQLFGKYRDMALAVKNPCHLNMAACLLKLKRYEEAIGQCSLVLGEDEN 265
           +  ++++  +  F      +  AL + +  HLN+A C LKL+ +  A+  C+  L  D N
Sbjct: 294 KKIVSWLEYESSFSSEEVQKAQALRLAS--HLNLAMCHLKLQAFSAAVESCNKALELDSN 351

Query: 266 NVKALFRRGKARAELGQTDAAREDFLKAGKFAPEDKSIARELRLLAEHEKAVYKKQKEIY 325
           N K LFRRG+A   +   D AR DF K  +  P +K+   +L +  +  +    ++K++Y
Sbjct: 352 NEKGLFRRGEAHLAVNDFDLARADFQKVLQLYPSNKAAKAQLAVCQQRIRKQIAREKKLY 411

Query: 326 KGIF 329
             +F
Sbjct: 412 ANMF 415

Immunophilin protein with PPIase and co-chaperone activities. Component of unligated steroid receptors heterocomplexes thought interaction with heat-shock protein 90 (HSP90) (By similarity). May play a role in the intracellular trafficking of heterooligomeric forms of steroid hormone receptors between cytoplasm and nuclear compartments. The isomerase activity controls neuronal growth cones via regulation of TRPC1 channel opening (By similarity). Acts also as a regulator of microtubule dynamics by inhibiting MAPT/TAU ability to promote microtubule assembly.

Oryctolagus cuniculus (taxid: 9986)

EC: 5

EC: .

EC: 2

EC: .

EC: 1

EC: .

EC: 8

>sp|Q02790|FKBP4_HUMAN Peptidyl-prolyl cis-trans isomerase FKBP4 OS=Homo sapiens GN=FKBP4 PE=1 SV=3

 Score =  103 bits (256), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 71/244 (29%), Positives = 126/244 (51%), Gaps = 8/244 (3%)

Query: 88  FDDTWLEQQPLEMVLGK-EKKEMT-GLAIGVSSMKAGEHALLHVGWELGYGKEGSFSFPN 145
           + D   +Q+ L   +G+ E  ++  GL   +  M+ GEH+++++     +G  G   F  
Sbjct: 178 YKDKLFDQRELRFEIGEGENLDLPYGLERAIQRMEKGEHSIVYLKPSYAFGSVGKEKF-Q 236

Query: 146 VSPMADLVYEVVLIGFDETKEGKARSDMTVEERIGAADRRKMDGNALFKEEKLEEAMQQY 205
           + P A+L YE+ L  F++ KE     +M  EE++  +   K  G   FKE K ++A+ QY
Sbjct: 237 IPPNAELKYELHLKSFEKAKES---WEMNSEEKLEQSTIVKERGTVYFKEGKYKQALLQY 293

Query: 206 EMAIAYMGDDFMFQLFGKYRDMALAVKNPCHLNMAACLLKLKRYEEAIGQCSLVLGEDEN 265
           +  ++++  +  F    +    A A++   HLN+A C LKL+ +  AI  C+  L  D N
Sbjct: 294 KKIVSWLEYESSFS--NEEAQKAQALRLASHLNLAMCHLKLQAFSAAIESCNKALELDSN 351

Query: 266 NVKALFRRGKARAELGQTDAAREDFLKAGKFAPEDKSIARELRLLAEHEKAVYKKQKEIY 325
           N K LFRRG+A   +   + AR DF K  +  P +K+   +L +  +  +    ++K++Y
Sbjct: 352 NEKGLFRRGEAHLAVNDFELARADFQKVLQLYPNNKAAKTQLAVCQQRIRRQLAREKKLY 411

Query: 326 KGIF 329
             +F
Sbjct: 412 ANMF 415

Immunophilin protein with PPIase and co-chaperone activities (By similarity). Component of unligated steroid receptors heterocomplexes through interaction with heat-shock protein 90 (HSP90). May play a role in the intracellular trafficking of heterooligomeric forms of steroid hormone receptors between cytoplasm and nuclear compartments (By similarity). The isomerase activity controls neuronal growth cones via regulation of TRPC1 channel opening. Acts also as a regulator of microtubule dynamics by inhibiting MAPT/TAU ability to promote microtubule assembly.

Homo sapiens (taxid: 9606)

EC: 5

EC: .

EC: 2

EC: .

EC: 1

EC: .

EC: 8

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	365
225450073	365	PREDICTED: 42 kDa peptidyl-prolyl isomer	0.997	0.997	0.836	1e-176
356531669	370	PREDICTED: 42 kDa peptidyl-prolyl isomer	1.0	0.986	0.8	1e-173
255645857	370	unknown [Glycine max]	1.0	0.986	0.797	1e-172
356542700	370	PREDICTED: 42 kDa peptidyl-prolyl isomer	1.0	0.986	0.797	1e-171
449464000	369	PREDICTED: peptidyl-prolyl cis-trans iso	0.975	0.964	0.803	1e-168
449516701	369	PREDICTED: peptidyl-prolyl cis-trans iso	0.978	0.967	0.801	1e-168
357470963	384	42 kDa peptidyl-prolyl isomerase [Medica	0.989	0.940	0.773	1e-164
357470971	372	42 kDa peptidyl-prolyl isomerase [Medica	0.989	0.970	0.773	1e-164
357470965	394	42 kDa peptidyl-prolyl isomerase [Medica	0.989	0.916	0.773	1e-164
357470967	389	42 kDa peptidyl-prolyl isomerase [Medica	0.989	0.928	0.773	1e-164

>gi|225450073|ref|XP_002277668.1| PREDICTED: 42 kDa peptidyl-prolyl isomerase isoform 2 [Vitis vinifera] gi|225450075|ref|XP_002277645.1| PREDICTED: 42 kDa peptidyl-prolyl isomerase isoform 1 [Vitis vinifera] gi|297736282|emb|CBI24920.3| unnamed protein product [Vitis vinifera]

 Score =  622 bits (1605), Expect = e-176,   Method: Compositional matrix adjust.
 Identities = 306/366 (83%), Positives = 335/366 (91%), Gaps = 2/366 (0%)

Query: 1   MEEVDGEPKSQAPGEVGESEIVTEDAAFVRGEPPQDGDGPPKVDSEVEVLHEKVTKQIIK 60
           ME+V+ E +SQ P +  E+EIVTE+AAFV GEP QDG GPPKVDSEVEVLHEKVTKQI+K
Sbjct: 1   MEDVE-ELQSQKPDQDDENEIVTENAAFVHGEPLQDGTGPPKVDSEVEVLHEKVTKQIMK 59

Query: 61  EGHGQKPSKYSTCFLHYRAWAESTRHKFDDTWLEQQPLEMVLGKEKKEMTGLAIGVSSMK 120
           EGHGQKPSKYSTCFLHYRAW EST+HKF+DTW EQ+P+E+V+GKEKKEMTGLAIGVS+MK
Sbjct: 60  EGHGQKPSKYSTCFLHYRAWTESTQHKFEDTWNEQRPVEIVIGKEKKEMTGLAIGVSNMK 119

Query: 121 AGEHALLHVGWELGYGKEGSFSFPNVSPMADLVYEVVLIGFDETKEGKARSDMTVEERIG 180
           +GE ALLHVGWELGYGKEGSFSFPNV PMAD++YEV LIGFDETKEGKAR DMTVEERIG
Sbjct: 120 SGERALLHVGWELGYGKEGSFSFPNVPPMADILYEVELIGFDETKEGKARGDMTVEERIG 179

Query: 181 AADRRKMDGNALFKEEKLEEAMQQYEMAIAYMGDDFMFQLFGKYRDMALAVKNPCHLNMA 240
           AADRRKMDGN  FKEEKLEEAMQQYEMAIAYMGDDFMFQLFGKYRDMALAVKNPCHLNMA
Sbjct: 180 AADRRKMDGNVYFKEEKLEEAMQQYEMAIAYMGDDFMFQLFGKYRDMALAVKNPCHLNMA 239

Query: 241 ACLLKLKRYEEAIGQCSLVLGEDENNVKALFRRGKARAELGQTDAAREDFLKAGKFAPED 300
           ACL+KLKRYEEAIGQCS+VL EDENNVKALFRRGKARAELGQTDAAREDF KA K+APED
Sbjct: 240 ACLIKLKRYEEAIGQCSIVLAEDENNVKALFRRGKARAELGQTDAAREDFSKARKYAPED 299

Query: 301 KSIARELRLLAEHEKAVYKKQKEIYKGIFG-PRPEPKQKKNWLIIFWQLLVSLVLGLFKR 359
           K+I+RELRLLAEH+KAVY+KQKEIYKGIFG P     +K NWLI+FWQ LVSL+  LFKR
Sbjct: 300 KAISRELRLLAEHDKAVYQKQKEIYKGIFGPPPEPKPKKTNWLILFWQWLVSLLYSLFKR 359

Query: 360 KRVKAE 365
           +R KA+
Sbjct: 360 ERHKAD 365

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356531669|ref|XP_003534399.1| PREDICTED: 42 kDa peptidyl-prolyl isomerase-like [Glycine max]

 Score =  613 bits (1580), Expect = e-173,   Method: Compositional matrix adjust.
 Identities = 296/370 (80%), Positives = 332/370 (89%), Gaps = 5/370 (1%)

Query: 1   MEEVDGEPKSQAPGEVGESEIVTEDAAFVRGEP-PQDGDGPPKVDSEVEVLHEKVTKQII 59
           MEE+ G     + G+  E+E++TE +AFV+GEP P+    PPKVDSEVEVLHEKVTKQII
Sbjct: 1   MEELQGSQTQSSLGQEDENEVITESSAFVKGEPAPEFSSNPPKVDSEVEVLHEKVTKQII 60

Query: 60  KEGHGQKPSKYSTCFLHYRAWAESTRHKFDDTWLEQQPLEMVLGKEKKEMTGLAIGVSSM 119
           KEGHGQKPSKYSTCF HYRAWAE + HKF+DTWLEQ+P+EMVLGKEKKEMTGL++GV+SM
Sbjct: 61  KEGHGQKPSKYSTCFFHYRAWAEKSEHKFEDTWLEQRPIEMVLGKEKKEMTGLSVGVASM 120

Query: 120 KAGEHALLHVGWELGYGKEGSFSFPNVSPMADLVYEVVLIGFDETKEGKARSDMTVEERI 179
           KAGE AL+ VGWELGYG+EGSFSFPNV P ADLVYEV LIGFDETKEGKARSDMTVEERI
Sbjct: 121 KAGERALVRVGWELGYGEEGSFSFPNVPPKADLVYEVELIGFDETKEGKARSDMTVEERI 180

Query: 180 GAADRRKMDGNALFKEEKLEEAMQQYEMAIAYMGDDFMFQLFGKYRDMALAVKNPCHLNM 239
           GAADRRKMDGNAL++EEKLEEAMQQYEMAIAYMGDDFMFQLFGKYRDMALAVKNPCHLNM
Sbjct: 181 GAADRRKMDGNALYQEEKLEEAMQQYEMAIAYMGDDFMFQLFGKYRDMALAVKNPCHLNM 240

Query: 240 AACLLKLKRYEEAIGQCSLVLGEDENNVKALFRRGKARAELGQTDAAREDFLKAGKFAPE 299
           AACL+KL RYEEAIGQC+ VLGEDENNVKALFRRGKARA LGQTDAAREDFLKA K+AP+
Sbjct: 241 AACLIKLNRYEEAIGQCNTVLGEDENNVKALFRRGKARATLGQTDAAREDFLKATKYAPQ 300

Query: 300 DKSIARELRLLAEHEKAVYKKQKEIYKGIFGPRPEPKQK-KNWLIIFWQLLVSLVLG--- 355
           DK+IA+ELRLLAEH+KAVY+KQKEIYKGIFGPRP+P  K +NWLI+ WQ L+S+  G   
Sbjct: 301 DKAIAKELRLLAEHDKAVYQKQKEIYKGIFGPRPQPVPKPRNWLILIWQWLLSVFYGLVT 360

Query: 356 LFKRKRVKAE 365
           LFKR+R K++
Sbjct: 361 LFKRERHKSD 370

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255645857|gb|ACU23419.1| unknown [Glycine max]

 Score =  611 bits (1576), Expect = e-172,   Method: Compositional matrix adjust.
 Identities = 295/370 (79%), Positives = 331/370 (89%), Gaps = 5/370 (1%)

Query: 1   MEEVDGEPKSQAPGEVGESEIVTEDAAFVRGEP-PQDGDGPPKVDSEVEVLHEKVTKQII 59
           MEE+ G     + G+  E+E++TE +AFV+GEP P+    PPKVDSEVEVLHEKVTKQII
Sbjct: 1   MEELQGSQTQSSLGQEDENEVITESSAFVKGEPAPEFSSNPPKVDSEVEVLHEKVTKQII 60

Query: 60  KEGHGQKPSKYSTCFLHYRAWAESTRHKFDDTWLEQQPLEMVLGKEKKEMTGLAIGVSSM 119
           KEGHGQKPSKYSTCF HYRAWAE + HKF+DTWLEQ+P+EMVLGKEKKEMTGL++GV+SM
Sbjct: 61  KEGHGQKPSKYSTCFFHYRAWAEKSEHKFEDTWLEQRPIEMVLGKEKKEMTGLSVGVASM 120

Query: 120 KAGEHALLHVGWELGYGKEGSFSFPNVSPMADLVYEVVLIGFDETKEGKARSDMTVEERI 179
           KAGE AL+ VGWELGYG+EGSFSFPNV P ADLVYEV LIGFDETKEGKARSDMTVEERI
Sbjct: 121 KAGERALVRVGWELGYGEEGSFSFPNVPPKADLVYEVELIGFDETKEGKARSDMTVEERI 180

Query: 180 GAADRRKMDGNALFKEEKLEEAMQQYEMAIAYMGDDFMFQLFGKYRDMALAVKNPCHLNM 239
           GAADRRKMDGNAL++EEKLEEAMQQYEMAIAYMGDDFMFQLFGKYRDMALAVKNPCHLNM
Sbjct: 181 GAADRRKMDGNALYQEEKLEEAMQQYEMAIAYMGDDFMFQLFGKYRDMALAVKNPCHLNM 240

Query: 240 AACLLKLKRYEEAIGQCSLVLGEDENNVKALFRRGKARAELGQTDAAREDFLKAGKFAPE 299
           AACL+KL RYEEAIGQC+ VLGEDENNVKALFRRGKARA  GQTDAAREDFLKA K+AP+
Sbjct: 241 AACLIKLNRYEEAIGQCNTVLGEDENNVKALFRRGKARATFGQTDAAREDFLKATKYAPQ 300

Query: 300 DKSIARELRLLAEHEKAVYKKQKEIYKGIFGPRPEPKQK-KNWLIIFWQLLVSLVLG--- 355
           DK+IA+ELRLLAEH+KAVY+KQKEIYKGIFGPRP+P  K +NWLI+ WQ L+S+  G   
Sbjct: 301 DKAIAKELRLLAEHDKAVYQKQKEIYKGIFGPRPQPVPKPRNWLILIWQWLLSVFYGLVT 360

Query: 356 LFKRKRVKAE 365
           LFKR+R K++
Sbjct: 361 LFKRERHKSD 370

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356542700|ref|XP_003539804.1| PREDICTED: 42 kDa peptidyl-prolyl isomerase-like [Glycine max]

 Score =  608 bits (1569), Expect = e-171,   Method: Compositional matrix adjust.
 Identities = 295/370 (79%), Positives = 330/370 (89%), Gaps = 5/370 (1%)

Query: 1   MEEVDGEPKSQAPGEVGESEIVTEDAAFVRGEP-PQDGDGPPKVDSEVEVLHEKVTKQII 59
           MEEV       + G+  E+E++TE +AFV+GEP P+    PPKVDSEVEVLHEKV+KQII
Sbjct: 1   MEEVQESQTQSSLGQEEENEVITESSAFVKGEPAPEFSSNPPKVDSEVEVLHEKVSKQII 60

Query: 60  KEGHGQKPSKYSTCFLHYRAWAESTRHKFDDTWLEQQPLEMVLGKEKKEMTGLAIGVSSM 119
           KEGHGQKPSKYSTCF HYRAWAE ++HKF+DTW EQ+P+EMVLGKEKKEMTGL IGV+SM
Sbjct: 61  KEGHGQKPSKYSTCFFHYRAWAEKSQHKFEDTWQEQRPIEMVLGKEKKEMTGLGIGVASM 120

Query: 120 KAGEHALLHVGWELGYGKEGSFSFPNVSPMADLVYEVVLIGFDETKEGKARSDMTVEERI 179
           KAGE AL+ VGWELGYG+EGSFSFPNV P ADLVYEV LIGFDETKEGKARSDMTVEERI
Sbjct: 121 KAGERALVRVGWELGYGEEGSFSFPNVPPKADLVYEVELIGFDETKEGKARSDMTVEERI 180

Query: 180 GAADRRKMDGNALFKEEKLEEAMQQYEMAIAYMGDDFMFQLFGKYRDMALAVKNPCHLNM 239
           GAADRRKMDGNAL++EEKLEEAMQQYEMAIAYMGDDFMFQLFGKYRDMALAVKNPCHLNM
Sbjct: 181 GAADRRKMDGNALYQEEKLEEAMQQYEMAIAYMGDDFMFQLFGKYRDMALAVKNPCHLNM 240

Query: 240 AACLLKLKRYEEAIGQCSLVLGEDENNVKALFRRGKARAELGQTDAAREDFLKAGKFAPE 299
           AACL+KL RYEEAIGQCS+VLGEDENNVKALFRRGKARA LGQTD AREDFLKA K+AP+
Sbjct: 241 AACLIKLNRYEEAIGQCSIVLGEDENNVKALFRRGKARAALGQTDTAREDFLKASKYAPQ 300

Query: 300 DKSIARELRLLAEHEKAVYKKQKEIYKGIFGPRPEPKQK-KNWLIIFWQLLVSLVLG--- 355
           DK+IA+ELRLLAEH+KAVY+KQKEIYKGIFGPRP+P  K +NWLI+ WQ L+S+  G   
Sbjct: 301 DKAIAKELRLLAEHDKAVYQKQKEIYKGIFGPRPQPVPKPRNWLILIWQWLLSVFYGLVT 360

Query: 356 LFKRKRVKAE 365
           LFKR+R K++
Sbjct: 361 LFKRQRHKSD 370

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449464000|ref|XP_004149717.1| PREDICTED: peptidyl-prolyl cis-trans isomerase FKBP42-like [Cucumis sativus]

 Score =  597 bits (1540), Expect = e-168,   Method: Compositional matrix adjust.
 Identities = 291/362 (80%), Positives = 319/362 (88%), Gaps = 6/362 (1%)

Query: 4   VDGEPKSQA--PGEVGESEIVTEDAAFVRGEPPQDGDGPPKVDSEVEVLHEKVTKQIIKE 61
           +DGE + Q   PG+  E+EIV E A+ V GEPP D +GPPKVDSEVEVL EKVTKQI+KE
Sbjct: 1   MDGEQEQQTHNPGQDDENEIVAEGASVVHGEPPSDDNGPPKVDSEVEVLQEKVTKQIMKE 60

Query: 62  GHGQKPSKYSTCFLHYRAWAESTRHKFDDTWLEQQPLEMVLGKEKKEMTGLAIGVSSMKA 121
           GHGQ PSKYSTCFLHYRAW ESTRHKF+DTW E +PLE+VLGKEKKEMTGL+IGV+SMK+
Sbjct: 61  GHGQIPSKYSTCFLHYRAWTESTRHKFEDTWNELRPLELVLGKEKKEMTGLSIGVASMKS 120

Query: 122 GEHALLHVGWELGYGKEGSFSFPNVSPMADLVYEVVLIGFDETKEGKARSDMTVEERIGA 181
           GE ALLHVGWEL YGKEG+FSFPNV PM+D++YEV LIGFDETKEGKARSDMTVEERIGA
Sbjct: 121 GERALLHVGWELAYGKEGNFSFPNVPPMSDVLYEVELIGFDETKEGKARSDMTVEERIGA 180

Query: 182 ADRRKMDGNALFKEEKLEEAMQQYEMAIAYMGDDFMFQLFGKYRDMALAVKNPCHLNMAA 241
           ADRRKMDGN LFKEEKLEEAMQQYEMAIAYMGDDFMFQLFGKYRDMALAVKNPCHLNM+A
Sbjct: 181 ADRRKMDGNVLFKEEKLEEAMQQYEMAIAYMGDDFMFQLFGKYRDMALAVKNPCHLNMSA 240

Query: 242 CLLKLKRYEEAIGQCSLVLGEDENNVKALFRRGKARAELGQTDAAREDFLKAGKFAPEDK 301
           CL+KLKRYEEAI QCS+VL EDE+N KALFRRGKARAELGQTDAARED LKA K+APEDK
Sbjct: 241 CLIKLKRYEEAIAQCSMVLAEDESNAKALFRRGKARAELGQTDAAREDLLKARKYAPEDK 300

Query: 302 SIARELRLLAEHEKAVYKKQKEIYKGIFGPRPEPKQKK----NWLIIFWQLLVSLVLGLF 357
           +I REL+LLAEH+KAVY+KQKEIYKGIFGPRPEPK K       LI+ WQ L+S    LF
Sbjct: 301 AIGRELKLLAEHDKAVYQKQKEIYKGIFGPRPEPKPKHGVIVTQLILIWQWLISFFYRLF 360

Query: 358 KR 359
           KR
Sbjct: 361 KR 362

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449516701|ref|XP_004165385.1| PREDICTED: peptidyl-prolyl cis-trans isomerase FKBP42-like [Cucumis sativus]

 Score =  597 bits (1539), Expect = e-168,   Method: Compositional matrix adjust.
 Identities = 291/363 (80%), Positives = 319/363 (87%), Gaps = 6/363 (1%)

Query: 4   VDGEPKSQA--PGEVGESEIVTEDAAFVRGEPPQDGDGPPKVDSEVEVLHEKVTKQIIKE 61
           +DGE + Q   PG+  E+EIV E A+ V GEPP D +GPPKVDSEVEVL EKVTKQI+KE
Sbjct: 1   MDGEQEQQTHNPGQDDENEIVAEGASVVHGEPPSDDNGPPKVDSEVEVLQEKVTKQIMKE 60

Query: 62  GHGQKPSKYSTCFLHYRAWAESTRHKFDDTWLEQQPLEMVLGKEKKEMTGLAIGVSSMKA 121
           GHGQ PSKYSTCFLHYRAW ESTRHKF+DTW E +PLE+VLGK KKEMTGL+IGV+SMK+
Sbjct: 61  GHGQIPSKYSTCFLHYRAWTESTRHKFEDTWNELRPLELVLGKRKKEMTGLSIGVASMKS 120

Query: 122 GEHALLHVGWELGYGKEGSFSFPNVSPMADLVYEVVLIGFDETKEGKARSDMTVEERIGA 181
           GE ALLHVGWEL YGKEG+FSFPNV PM+D++YEV LIGFDETKEGKARSDMTVEERIGA
Sbjct: 121 GERALLHVGWELAYGKEGNFSFPNVPPMSDVLYEVELIGFDETKEGKARSDMTVEERIGA 180

Query: 182 ADRRKMDGNALFKEEKLEEAMQQYEMAIAYMGDDFMFQLFGKYRDMALAVKNPCHLNMAA 241
           ADRRKMDGN LFKEEKLEEAMQQYEMAIAYMGDDFMFQLFGKYRDMALAVKNPCHLNM+A
Sbjct: 181 ADRRKMDGNVLFKEEKLEEAMQQYEMAIAYMGDDFMFQLFGKYRDMALAVKNPCHLNMSA 240

Query: 242 CLLKLKRYEEAIGQCSLVLGEDENNVKALFRRGKARAELGQTDAAREDFLKAGKFAPEDK 301
           CL+KLKRYEEAI QCS+VL EDE+N KALFRRGKARAELGQTDAARED LKA K+APEDK
Sbjct: 241 CLIKLKRYEEAIAQCSMVLAEDESNAKALFRRGKARAELGQTDAAREDLLKARKYAPEDK 300

Query: 302 SIARELRLLAEHEKAVYKKQKEIYKGIFGPRPEPKQKK----NWLIIFWQLLVSLVLGLF 357
           +I REL+LLAEH+KAVY+KQKEIYKGIFGPRPEPK K       LI+ WQ L+S    LF
Sbjct: 301 AIGRELKLLAEHDKAVYQKQKEIYKGIFGPRPEPKPKHGVIVTQLILIWQWLISFFYRLF 360

Query: 358 KRK 360
           KRK
Sbjct: 361 KRK 363

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357470963|ref|XP_003605766.1| 42 kDa peptidyl-prolyl isomerase [Medicago truncatula] gi|355506821|gb|AES87963.1| 42 kDa peptidyl-prolyl isomerase [Medicago truncatula]

 Score =  585 bits (1507), Expect = e-164,   Method: Compositional matrix adjust.
 Identities = 284/367 (77%), Positives = 321/367 (87%), Gaps = 6/367 (1%)

Query: 1   MEEV-DGEPKSQAPGEVGESEIVTEDAAFVRGEPPQDG-DGPPKVDSEVEVLHEKVTKQI 58
           MEEV + +P+S+   E    E++ E++ + +GE P++    PPKVDSEVEVLHEKVTKQI
Sbjct: 13  MEEVQESQPQSKPGQENNVDEVIDENSEYEKGETPEELLSSPPKVDSEVEVLHEKVTKQI 72

Query: 59  IKEGHGQKPSKYSTCFLHYRAWAESTRHKFDDTWLEQQPLEMVLGKEKKEMTGLAIGVSS 118
           IKEGHGQKPSKYSTCF HYRAW+E+T HKF+DTW EQ+P EMV+GKEKKEMTGL IGV+S
Sbjct: 73  IKEGHGQKPSKYSTCFFHYRAWSENTEHKFEDTWQEQRPTEMVIGKEKKEMTGLGIGVAS 132

Query: 119 MKAGEHALLHVGWELGYGKEGSFSFPNVSPMADLVYEVVLIGFDETKEGKARSDMTVEER 178
           MKAGE ALL V WELGYG+EGSFSFPNV PMADLVYEV LIGFDETK+GKARSDMTVEER
Sbjct: 133 MKAGERALLRVSWELGYGQEGSFSFPNVPPMADLVYEVELIGFDETKDGKARSDMTVEER 192

Query: 179 IGAADRRKMDGNALFKEEKLEEAMQQYEMAIAYMGDDFMFQLFGKYRDMALAVKNPCHLN 238
           IGAADRRKMDGN LF+E KLEEAMQQYEMAIAYMGDDFMFQLFGKYRDMALAVKNPCHLN
Sbjct: 193 IGAADRRKMDGNVLFQENKLEEAMQQYEMAIAYMGDDFMFQLFGKYRDMALAVKNPCHLN 252

Query: 239 MAACLLKLKRYEEAIGQCSLVLGEDENNVKALFRRGKARAELGQTDAAREDFLKAGKFAP 298
            AACL+KL RYEEAIGQCS+VL EDE+N+KALFRRGKARA LGQTDAAREDFLKA K AP
Sbjct: 253 TAACLIKLNRYEEAIGQCSIVLSEDESNLKALFRRGKARAALGQTDAAREDFLKARKHAP 312

Query: 299 EDKSIARELRLLAEHEKAVYKKQKEIYKGIFGPRPEP-KQKKNWLIIFWQLLVSL---VL 354
           EDK+IAREL+LLAEH+KA+Y+KQKEIYKGIFGPRP+P  QK+NW I+ WQ LVS+    +
Sbjct: 313 EDKAIARELKLLAEHDKAIYQKQKEIYKGIFGPRPQPVPQKRNWFIVVWQWLVSVFHNFI 372

Query: 355 GLFKRKR 361
            LF R++
Sbjct: 373 TLFNREK 379

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357470971|ref|XP_003605770.1| 42 kDa peptidyl-prolyl isomerase [Medicago truncatula] gi|355506825|gb|AES87967.1| 42 kDa peptidyl-prolyl isomerase [Medicago truncatula] gi|388520749|gb|AFK48436.1| unknown [Medicago truncatula]

 Score =  584 bits (1506), Expect = e-164,   Method: Compositional matrix adjust.
 Identities = 284/367 (77%), Positives = 321/367 (87%), Gaps = 6/367 (1%)

Query: 1   MEEV-DGEPKSQAPGEVGESEIVTEDAAFVRGEPPQDG-DGPPKVDSEVEVLHEKVTKQI 58
           MEEV + +P+S+   E    E++ E++ + +GE P++    PPKVDSEVEVLHEKVTKQI
Sbjct: 1   MEEVQESQPQSKPGQENNVDEVIDENSEYEKGETPEELLSSPPKVDSEVEVLHEKVTKQI 60

Query: 59  IKEGHGQKPSKYSTCFLHYRAWAESTRHKFDDTWLEQQPLEMVLGKEKKEMTGLAIGVSS 118
           IKEGHGQKPSKYSTCF HYRAW+E+T HKF+DTW EQ+P EMV+GKEKKEMTGL IGV+S
Sbjct: 61  IKEGHGQKPSKYSTCFFHYRAWSENTEHKFEDTWQEQRPTEMVIGKEKKEMTGLGIGVAS 120

Query: 119 MKAGEHALLHVGWELGYGKEGSFSFPNVSPMADLVYEVVLIGFDETKEGKARSDMTVEER 178
           MKAGE ALL V WELGYG+EGSFSFPNV PMADLVYEV LIGFDETK+GKARSDMTVEER
Sbjct: 121 MKAGERALLRVSWELGYGQEGSFSFPNVPPMADLVYEVELIGFDETKDGKARSDMTVEER 180

Query: 179 IGAADRRKMDGNALFKEEKLEEAMQQYEMAIAYMGDDFMFQLFGKYRDMALAVKNPCHLN 238
           IGAADRRKMDGN LF+E KLEEAMQQYEMAIAYMGDDFMFQLFGKYRDMALAVKNPCHLN
Sbjct: 181 IGAADRRKMDGNVLFQENKLEEAMQQYEMAIAYMGDDFMFQLFGKYRDMALAVKNPCHLN 240

Query: 239 MAACLLKLKRYEEAIGQCSLVLGEDENNVKALFRRGKARAELGQTDAAREDFLKAGKFAP 298
            AACL+KL RYEEAIGQCS+VL EDE+N+KALFRRGKARA LGQTDAAREDFLKA K AP
Sbjct: 241 TAACLIKLNRYEEAIGQCSIVLSEDESNLKALFRRGKARAALGQTDAAREDFLKARKHAP 300

Query: 299 EDKSIARELRLLAEHEKAVYKKQKEIYKGIFGPRPEP-KQKKNWLIIFWQLLVSL---VL 354
           EDK+IAREL+LLAEH+KA+Y+KQKEIYKGIFGPRP+P  QK+NW I+ WQ LVS+    +
Sbjct: 301 EDKAIARELKLLAEHDKAIYQKQKEIYKGIFGPRPQPVPQKRNWFIVVWQWLVSVFHNFI 360

Query: 355 GLFKRKR 361
            LF R++
Sbjct: 361 TLFNREK 367

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357470965|ref|XP_003605767.1| 42 kDa peptidyl-prolyl isomerase [Medicago truncatula] gi|355506822|gb|AES87964.1| 42 kDa peptidyl-prolyl isomerase [Medicago truncatula]

 Score =  584 bits (1505), Expect = e-164,   Method: Compositional matrix adjust.
 Identities = 284/367 (77%), Positives = 321/367 (87%), Gaps = 6/367 (1%)

Query: 1   MEEV-DGEPKSQAPGEVGESEIVTEDAAFVRGEPPQDG-DGPPKVDSEVEVLHEKVTKQI 58
           MEEV + +P+S+   E    E++ E++ + +GE P++    PPKVDSEVEVLHEKVTKQI
Sbjct: 23  MEEVQESQPQSKPGQENNVDEVIDENSEYEKGETPEELLSSPPKVDSEVEVLHEKVTKQI 82

Query: 59  IKEGHGQKPSKYSTCFLHYRAWAESTRHKFDDTWLEQQPLEMVLGKEKKEMTGLAIGVSS 118
           IKEGHGQKPSKYSTCF HYRAW+E+T HKF+DTW EQ+P EMV+GKEKKEMTGL IGV+S
Sbjct: 83  IKEGHGQKPSKYSTCFFHYRAWSENTEHKFEDTWQEQRPTEMVIGKEKKEMTGLGIGVAS 142

Query: 119 MKAGEHALLHVGWELGYGKEGSFSFPNVSPMADLVYEVVLIGFDETKEGKARSDMTVEER 178
           MKAGE ALL V WELGYG+EGSFSFPNV PMADLVYEV LIGFDETK+GKARSDMTVEER
Sbjct: 143 MKAGERALLRVSWELGYGQEGSFSFPNVPPMADLVYEVELIGFDETKDGKARSDMTVEER 202

Query: 179 IGAADRRKMDGNALFKEEKLEEAMQQYEMAIAYMGDDFMFQLFGKYRDMALAVKNPCHLN 238
           IGAADRRKMDGN LF+E KLEEAMQQYEMAIAYMGDDFMFQLFGKYRDMALAVKNPCHLN
Sbjct: 203 IGAADRRKMDGNVLFQENKLEEAMQQYEMAIAYMGDDFMFQLFGKYRDMALAVKNPCHLN 262

Query: 239 MAACLLKLKRYEEAIGQCSLVLGEDENNVKALFRRGKARAELGQTDAAREDFLKAGKFAP 298
            AACL+KL RYEEAIGQCS+VL EDE+N+KALFRRGKARA LGQTDAAREDFLKA K AP
Sbjct: 263 TAACLIKLNRYEEAIGQCSIVLSEDESNLKALFRRGKARAALGQTDAAREDFLKARKHAP 322

Query: 299 EDKSIARELRLLAEHEKAVYKKQKEIYKGIFGPRPEP-KQKKNWLIIFWQLLVSL---VL 354
           EDK+IAREL+LLAEH+KA+Y+KQKEIYKGIFGPRP+P  QK+NW I+ WQ LVS+    +
Sbjct: 323 EDKAIARELKLLAEHDKAIYQKQKEIYKGIFGPRPQPVPQKRNWFIVVWQWLVSVFHNFI 382

Query: 355 GLFKRKR 361
            LF R++
Sbjct: 383 TLFNREK 389

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357470967|ref|XP_003605768.1| 42 kDa peptidyl-prolyl isomerase [Medicago truncatula] gi|355506823|gb|AES87965.1| 42 kDa peptidyl-prolyl isomerase [Medicago truncatula]

 Score =  583 bits (1504), Expect = e-164,   Method: Compositional matrix adjust.
 Identities = 284/367 (77%), Positives = 321/367 (87%), Gaps = 6/367 (1%)

Query: 1   MEEV-DGEPKSQAPGEVGESEIVTEDAAFVRGEPPQDG-DGPPKVDSEVEVLHEKVTKQI 58
           MEEV + +P+S+   E    E++ E++ + +GE P++    PPKVDSEVEVLHEKVTKQI
Sbjct: 18  MEEVQESQPQSKPGQENNVDEVIDENSEYEKGETPEELLSSPPKVDSEVEVLHEKVTKQI 77

Query: 59  IKEGHGQKPSKYSTCFLHYRAWAESTRHKFDDTWLEQQPLEMVLGKEKKEMTGLAIGVSS 118
           IKEGHGQKPSKYSTCF HYRAW+E+T HKF+DTW EQ+P EMV+GKEKKEMTGL IGV+S
Sbjct: 78  IKEGHGQKPSKYSTCFFHYRAWSENTEHKFEDTWQEQRPTEMVIGKEKKEMTGLGIGVAS 137

Query: 119 MKAGEHALLHVGWELGYGKEGSFSFPNVSPMADLVYEVVLIGFDETKEGKARSDMTVEER 178
           MKAGE ALL V WELGYG+EGSFSFPNV PMADLVYEV LIGFDETK+GKARSDMTVEER
Sbjct: 138 MKAGERALLRVSWELGYGQEGSFSFPNVPPMADLVYEVELIGFDETKDGKARSDMTVEER 197

Query: 179 IGAADRRKMDGNALFKEEKLEEAMQQYEMAIAYMGDDFMFQLFGKYRDMALAVKNPCHLN 238
           IGAADRRKMDGN LF+E KLEEAMQQYEMAIAYMGDDFMFQLFGKYRDMALAVKNPCHLN
Sbjct: 198 IGAADRRKMDGNVLFQENKLEEAMQQYEMAIAYMGDDFMFQLFGKYRDMALAVKNPCHLN 257

Query: 239 MAACLLKLKRYEEAIGQCSLVLGEDENNVKALFRRGKARAELGQTDAAREDFLKAGKFAP 298
            AACL+KL RYEEAIGQCS+VL EDE+N+KALFRRGKARA LGQTDAAREDFLKA K AP
Sbjct: 258 TAACLIKLNRYEEAIGQCSIVLSEDESNLKALFRRGKARAALGQTDAAREDFLKARKHAP 317

Query: 299 EDKSIARELRLLAEHEKAVYKKQKEIYKGIFGPRPEP-KQKKNWLIIFWQLLVSL---VL 354
           EDK+IAREL+LLAEH+KA+Y+KQKEIYKGIFGPRP+P  QK+NW I+ WQ LVS+    +
Sbjct: 318 EDKAIARELKLLAEHDKAIYQKQKEIYKGIFGPRPQPVPQKRNWFIVVWQWLVSVFHNFI 377

Query: 355 GLFKRKR 361
            LF R++
Sbjct: 378 TLFNREK 384

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	365
TAIR|locus:2089890	365	TWD1 "AT3G21640" [Arabidopsis	0.953	0.953	0.757	5.9e-144
UNIPROTKB|Q2QXS0	370	LOC_Os12g05090 "Os12g0145500 p	0.967	0.954	0.731	7.5e-144
TAIR|locus:2152561	578	ROF2 "AT5G48570" [Arabidopsis	0.775	0.489	0.340	3.1e-31
TAIR|locus:2090265	562	ROF1 "AT3G25230" [Arabidopsis	0.805	0.523	0.324	9.7e-31
GENEDB_PFALCIPARUM|PFL2275c	304	PfFKBP35 "FK506-binding protei	0.758	0.911	0.329	1.3e-29
UNIPROTKB|Q8I4V8	304	FKBP35 "FK506-binding protein	0.758	0.911	0.329	1.3e-29
UNIPROTKB|Q7F1F2	580	OJ1191_A10.119 "cDNA clone:J03	0.745	0.468	0.314	1.6e-28
UNIPROTKB|Q6K5Q1	682	P0579G08.8 "Putative peptidylp	0.736	0.394	0.329	7e-28
ZFIN|ZDB-GENE-030131-514	450	fkbp4 "FK506 binding protein 4	0.742	0.602	0.292	5e-27
UNIPROTKB|Q7RM28	306	PY02360 "FK506-binding protein	0.756	0.901	0.315	5.7e-27

TAIR|locus:2089890 TWD1 "AT3G21640" [Arabidopsis thaliana (taxid:3702)]

 Score = 1407 (500.3 bits), Expect = 5.9e-144, P = 5.9e-144
 Identities = 266/351 (75%), Positives = 307/351 (87%)

Query:    18 ESEIVTEDAAFVRGEPPQDGDGPPKVDSEVEVLHEKVTKQIIKEGHGQKPSKYSTCFLHY 77
             ESEIVTE +A V  EP Q+G+ PPKVDSE EVL EKV+KQIIKEGHG KPSKYSTCFLHY
Sbjct:    15 ESEIVTEGSAVVHSEPSQEGNVPPKVDSEAEVLDEKVSKQIIKEGHGSKPSKYSTCFLHY 74

Query:    78 RAWAESTRHKFDDTWLEQQPLEMVLGKEKKEMTGLAIGVSSMKAGEHALLHVGWELGYGK 137
             RAW ++++HKF+DTW EQQP+E+VLGKEKKE+ GLAIGV+SMK+GE AL+HVGWEL YGK
Sbjct:    75 RAWTKNSQHKFEDTWHEQQPIELVLGKEKKELAGLAIGVASMKSGERALVHVGWELAYGK 134

Query:   138 EGSFSFPNVSPMADLVYEVVLIGFDETKEGKARSDMTVEERIGAADRRKMDGNALFKEEK 197
             EG+FSFPNV PMADL+YEV +IGFDETKEGKARSDMTVEERIGAADRRKMDGN+LFKEEK
Sbjct:   135 EGNFSFPNVPPMADLLYEVEVIGFDETKEGKARSDMTVEERIGAADRRKMDGNSLFKEEK 194

Query:   198 LEEAMQQYEMAIAYMGDDFMFQLFGKYRDMALAVKNPCHLNMAACLLKLKRYEEAIGQCS 257
             LEEAMQQYEMAIAYMGDDFMFQL+GKY+DMALAVKNPCHLN+AACL+KLKRY+EAIG C+
Sbjct:   195 LEEAMQQYEMAIAYMGDDFMFQLYGKYQDMALAVKNPCHLNIAACLIKLKRYDEAIGHCN 254

Query:   258 LVLGEDENNVKALFRRGKARAELGQTDAAREDFLKAGKFAPEDKSIARELRLLAEHEKAV 317
             +VL E+E N KALFRRGKA+AELGQ D+AR+DF KA K+AP+DK+I RELR LAE EKA+
Sbjct:   255 IVLTEEEKNPKALFRRGKAKAELGQMDSARDDFRKAQKYAPDDKAIRRELRALAEQEKAL 314

Query:   318 YKKQKEIYKGIFGPRPEPKQKKN---WLIIFWQLLVSLVLGLFKRKRVKAE 365
             Y+KQKE+YKGIF  + E   K     WLI+ WQ  VSL   +F+R RVKA+
Sbjct:   315 YQKQKEMYKGIFKGKDEGGAKSKSLFWLIVLWQWFVSLFSRIFRRHRVKAD 365

GO:0003755 "peptidyl-prolyl cis-trans isomerase activity" evidence=ISS;IDA

GO:0005528 "FK506 binding" evidence=ISS;IBA

GO:0005886 "plasma membrane" evidence=ISM;IDA

GO:0006457 "protein folding" evidence=IEA

GO:0018208 "peptidyl-proline modification" evidence=IBA

GO:0005516 "calmodulin binding" evidence=IDA

GO:0048366 "leaf development" evidence=IMP

GO:0005515 "protein binding" evidence=IPI

GO:0030244 "cellulose biosynthetic process" evidence=RCA

GO:0048193 "Golgi vesicle transport" evidence=RCA

UNIPROTKB|Q2QXS0 LOC_Os12g05090 "Os12g0145500 protein" [Oryza sativa Japonica Group (taxid:39947)]

 Score = 1406 (500.0 bits), Expect = 7.5e-144, P = 7.5e-144
 Identities = 261/357 (73%), Positives = 308/357 (86%)

Query:     8 PKSQAPGEVGESEIVTEDAAFVRGEPPQDGDGPPKVDSEVEVLHEKVTKQIIKEGHGQKP 67
             P + +     + EI  E+ +FV  EPPQDG  PP V S++EVL++KV KQ+IKEGHG+KP
Sbjct:    12 PAADSTSGASDDEITVEETSFVHTEPPQDGTAPPVVTSDMEVLNDKVKKQVIKEGHGKKP 71

Query:    68 SKYSTCFLHYRAWAESTRHKFDDTWLEQQPLEMVLGKEKKEMTGLAIGVSSMKAGEHALL 127
             S+++TCF+HYRAW + + HKF+DTW EQ  +E+VLGKEKKEMTGL IGVS+M++GE ALL
Sbjct:    72 SRFATCFVHYRAWVQGSSHKFEDTWQEQHSIELVLGKEKKEMTGLGIGVSNMRSGERALL 131

Query:   128 HVGWELGYGKEGSFSFPNVSPMADLVYEVVLIGFDETKEGKARSDMTVEERIGAADRRKM 187
             HV WELGYGKEGSFSFPNV PMADLVYEV LIGFD+ KEGKARSDMTVEERI AADRRK+
Sbjct:   132 HVNWELGYGKEGSFSFPNVPPMADLVYEVELIGFDDVKEGKARSDMTVEERIEAADRRKI 191

Query:   188 DGNALFKEEKLEEAMQQYEMAIAYMGDDFMFQLFGKYRDMALAVKNPCHLNMAACLLKLK 247
             +GN  FKE+K EEAMQQYEMAIAYMGDDFMFQLFGKYRDMALAVKNPCHLNMAACL+KLK
Sbjct:   192 EGNEYFKEKKFEEAMQQYEMAIAYMGDDFMFQLFGKYRDMALAVKNPCHLNMAACLIKLK 251

Query:   248 RYEEAIGQCSLVLGEDENNVKALFRRGKARAELGQTDAAREDFLKAGKFAPEDKSIAREL 307
             R++EAI QC++VL EDENNVKALFRRGKARAELGQT++AREDFLKA K++PEDK I REL
Sbjct:   252 RFDEAIAQCTIVLSEDENNVKALFRRGKARAELGQTESAREDFLKAKKYSPEDKEIQREL 311

Query:   308 RLLAEHEKAVYKKQKEIYKGIFGPRPEPKQK-KNWLIIFWQLLVSLV---LGLFKRK 360
             R LAE +KA+Y+KQKE+YKG+FGPRPEPK K  N+L++FW+ LVSL+   + LFKRK
Sbjct:   312 RSLAEQDKALYQKQKELYKGLFGPRPEPKPKASNFLVLFWRWLVSLIGYLVKLFKRK 368

GO:0000413 "protein peptidyl-prolyl isomerization" evidence=ISS

GO:0003755 "peptidyl-prolyl cis-trans isomerase activity" evidence=ISS

GO:0005528 "FK506 binding" evidence=ISS

GO:0016020 "membrane" evidence=ISS

GO:0018208 "peptidyl-proline modification" evidence=ISS

TAIR|locus:2152561 ROF2 "AT5G48570" [Arabidopsis thaliana (taxid:3702)]

 Score = 348 (127.6 bits), Expect = 3.1e-31, P = 3.1e-31
 Identities = 100/294 (34%), Positives = 145/294 (49%)

Query:    47 VEVLHE-KVTKQIIKEGHG-QKPSKYSTCFLHYRAWAESTRHKFDDTWLEQ--QPLEMVL 102
             VEV  + KV K+I+KEG G ++P++ +   L      +     F     E+  +P E  +
Sbjct:   274 VEVTDDRKVIKKILKEGEGYERPNEGAIVKLKLIGKLQDGTTVFVKKGHEEDEEPFEFKI 333

Query:   103 GKEKKEMTGLAIGVSSMKAGEHALLHVGWELGYGK-EGSFSFPNVSPMADLVYEVVLIGF 161
              +E+  + GL   V  MK GE AL+ +  E  +G  E       + P + + YEV L+ F
Sbjct:   334 DEEQV-IEGLEKAVMGMKKGEVALITISPEYAFGSSESKQELAVIPPNSTVYYEVELVSF 392

Query:   162 DETKEGKARSDMTVEERIGAADRRKMDGNALFKEEKLEEAMQQYEMAIAYMGDDFMFQLF 221
              + KE     DM  +ERI AA ++K +GN LFK  K   A ++YE  + Y+  D  F   
Sbjct:   393 IKEKESW---DMNTQERIEAAGKKKEEGNVLFKAGKYARASKRYERGVKYIEYDSTFDEE 449

Query:   222 GKYRDMALAVKNPCHLNMAACLLKLKRYEEAIGQCSLVLGEDENNVKALFRRGKARAELG 281
              K +   L +   C+LN AAC LKLK Y+EA    + VL  D  NVKA++RR  A  E  
Sbjct:   450 EKKKSKDLKIA--CNLNDAACKLKLKDYKEAAKLSTKVLEMDSRNVKAMYRRAHAYLETA 507

Query:   282 QTDAAREDFLKAGKFAPEDKSIARELRLLAEHEKAVYKKQKEIYKGIFGPRPEP 335
               D A  D  KA +  P++K +  E + L E  K   KK  + Y  +     EP
Sbjct:   508 DLDLAELDIKKALEIDPDNKEVKIEYKKLKEKVKEYNKKDAKFYSNMLSKMLEP 561

GO:0000413 "protein peptidyl-prolyl isomerization" evidence=IBA

GO:0003755 "peptidyl-prolyl cis-trans isomerase activity" evidence=ISS;IBA

GO:0005528 "FK506 binding" evidence=ISS;IBA

GO:0005634 "nucleus" evidence=ISM

GO:0006457 "protein folding" evidence=IEA;RCA

GO:0016020 "membrane" evidence=IBA

GO:0018208 "peptidyl-proline modification" evidence=IBA

GO:0005516 "calmodulin binding" evidence=ISS

GO:0005773 "vacuole" evidence=IDA

GO:0005515 "protein binding" evidence=IPI

GO:0070370 "cellular heat acclimation" evidence=IMP

GO:0006499 "N-terminal protein myristoylation" evidence=RCA

GO:0009408 "response to heat" evidence=RCA

GO:0009644 "response to high light intensity" evidence=RCA

GO:0034976 "response to endoplasmic reticulum stress" evidence=RCA

GO:0042542 "response to hydrogen peroxide" evidence=RCA

TAIR|locus:2090265 ROF1 "AT3G25230" [Arabidopsis thaliana (taxid:3702)]

 Score = 343 (125.8 bits), Expect = 9.7e-31, P = 9.7e-31
 Identities = 103/317 (32%), Positives = 159/317 (50%)

Query:    30 RGEPPQDGDG--PPKVDSEV-----------EVLHE-KVTKQIIKEGHG-QKPSKYSTCF 74
             +G+P   G+G  PP    E+           EV  + KV K+++KEG G ++P++ +   
Sbjct:   235 KGKPASAGEGAVPPNATLEINLELVSWKTVSEVTDDNKVVKKVLKEGDGYERPNEGAVVK 294

Query:    75 LHYRA-WAESTRHKFDDTWLEQQPLEMVLGKEKKEMTGLAIGVSSMKAGEHALLHVGWEL 133
             +       + T          ++P E    +E+  + GL   V  MK GE AL+ +  E 
Sbjct:   295 VKLIGKLQDGTVFLKKGHGENEEPFEFKTDEEQV-VDGLDRAVMKMKKGEVALVTIDPEY 353

Query:   134 GYGK-EGSFSFPNVSPMADLVYEVVLIGFDETKEGKARSDMTVEERIGAADRRKMDGNAL 192
              +G  E       V P + + YEV L+ FD+ +E     DM  EE+I AA ++K +GN+ 
Sbjct:   354 AFGSNESQQELAVVPPNSTVTYEVDLLTFDKERESW---DMNTEEKIEAASKKKEEGNSK 410

Query:   193 FKEEKLEEAMQQYEMAIAYMGDDFMFQLFGKYRDMALAVKNPCHLNMAACLLKLKRYEEA 252
             FK  K   A ++YE A+ ++  D  F    + +  A A+K  C+LN AAC LKLK Y++A
Sbjct:   411 FKGGKYSLASKRYEKAVKFIEYDTSFS--EEEKKQAKALKVACNLNDAACKLKLKDYKQA 468

Query:   253 IGQCSLVLGEDENNVKALFRRGKARAELGQTDAAREDFLKAGKFAPEDKSIARELRLLAE 312
                C+ VL  +  NVKAL+RR +A  EL   D A  D  KA +  P ++ +  E + L E
Sbjct:   469 EKLCTKVLELESTNVKALYRRAQAYMELSDLDLAEFDVKKALEIDPNNREVKLEQKRLKE 528

Query:   313 HEKAVYKKQKEIYKGIF 329
               K   KK+ + Y  +F
Sbjct:   529 KMKEFNKKEAKFYGNMF 545

GO:0000413 "protein peptidyl-prolyl isomerization" evidence=IBA

GO:0003755 "peptidyl-prolyl cis-trans isomerase activity" evidence=ISS;IBA

GO:0005528 "FK506 binding" evidence=ISS;IBA

GO:0005634 "nucleus" evidence=ISM;IDA

GO:0016020 "membrane" evidence=IBA

GO:0018208 "peptidyl-proline modification" evidence=IBA

GO:0005516 "calmodulin binding" evidence=ISS

GO:0046686 "response to cadmium ion" evidence=IEP

GO:0005515 "protein binding" evidence=IPI

GO:0005737 "cytoplasm" evidence=IDA

GO:0009408 "response to heat" evidence=RCA;IMP

GO:0070370 "cellular heat acclimation" evidence=IMP

GO:0005829 "cytosol" evidence=IDA

GO:0006457 "protein folding" evidence=RCA

GO:0006499 "N-terminal protein myristoylation" evidence=RCA

GO:0009644 "response to high light intensity" evidence=RCA

GO:0034976 "response to endoplasmic reticulum stress" evidence=RCA

GO:0042542 "response to hydrogen peroxide" evidence=RCA

GO:0006970 "response to osmotic stress" evidence=IMP

GO:0009845 "seed germination" evidence=IMP

GO:0032266 "phosphatidylinositol-3-phosphate binding" evidence=IDA

GO:0071944 "cell periphery" evidence=IDA

GO:0080025 "phosphatidylinositol-3,5-bisphosphate binding" evidence=IDA

GO:0009611 "response to wounding" evidence=IEP

GENEDB_PFALCIPARUM|PFL2275c PfFKBP35 "FK506-binding protein (FKBP)-type peptidyl-propyl isomerase" [Plasmodium falciparum (taxid:5833)]

 Score = 328 (120.5 bits), Expect = 1.3e-29, P = 1.3e-29
 Identities = 97/294 (32%), Positives = 152/294 (51%)

Query:    54 VTKQIIKEG-HGQK--PSKYSTCFLHYRAWAESTRHKFDDTWLEQQPLEMVLGKEKKEMT 110
             V K I+K+G  G++  P K +   +HY    EST   FD ++    P +  L ++ + + 
Sbjct:    18 VIKTILKKGDEGEENIPKKGNEVTVHYVGKLESTGKVFDSSFDRNVPFKFHL-EQGEVIK 76

Query:   111 GLAIGVSSMKAGEHALLHVGWELGYGKEG-SFSFPNVSPMADLVYEVVLIGFDETKEGKA 169
             G  I VSSM+  E  L+ +    GYG EG   S P  S    L++E+ L+ F E K  K+
Sbjct:    77 GWDICVSSMRKNEKCLVRIESMYGYGDEGCGESIPGNSV---LLFEIELLSFREAK--KS 131

Query:   170 RSDMTVEERIGAADRRKMDGNALFKEEKLEEAMQQYEMAIAYM--GDDFMFQ-LFGKYRD 226
               D T EE++ +A   K +GN  FK+ ++ EA+ +Y+ A+ +    +++  Q L  K ++
Sbjct:   132 IYDYTDEEKVQSAFDIKEEGNEFFKKNEINEAIVKYKEALDFFIHTEEWDDQILLDKKKN 191

Query:   227 MALAVKNPCHLNMAACLLKLKRYEEAIGQCSLVLGEDENNVKALFRRGKARAELGQTDAA 286
             + ++    C+LN+A C  K K Y +AI   S VL  D+NNVKAL++ G A    G  + A
Sbjct:   192 IEIS----CNLNLATCYNKNKDYPKAIDHASKVLKIDKNNVKALYKLGVANMYFGFLEEA 247

Query:   287 REDFLKAGKFAPEDKSIARELRLLAEHEKAVYKKQKEIYKGIFGPRPEPKQKKN 340
             +E+  KA    P +  I     L     K   KK K  + G+F   P  ++KKN
Sbjct:   248 KENLYKAASLNPNNLDIRNSYELCVNKLKEARKKDKLTFGGMFDKGPLYEEKKN 301

GO:0005528 "FK506 binding" evidence=ISS

GO:0003755 "peptidyl-prolyl cis-trans isomerase activity" evidence=ISS

GO:0005575 "cellular_component" evidence=ND

UNIPROTKB|Q8I4V8 FKBP35 "FK506-binding protein (FKBP)-type peptidyl-propyl isomerase" [Plasmodium falciparum 3D7 (taxid:36329)]

 Score = 328 (120.5 bits), Expect = 1.3e-29, P = 1.3e-29
 Identities = 97/294 (32%), Positives = 152/294 (51%)

Query:    54 VTKQIIKEG-HGQK--PSKYSTCFLHYRAWAESTRHKFDDTWLEQQPLEMVLGKEKKEMT 110
             V K I+K+G  G++  P K +   +HY    EST   FD ++    P +  L ++ + + 
Sbjct:    18 VIKTILKKGDEGEENIPKKGNEVTVHYVGKLESTGKVFDSSFDRNVPFKFHL-EQGEVIK 76

Query:   111 GLAIGVSSMKAGEHALLHVGWELGYGKEG-SFSFPNVSPMADLVYEVVLIGFDETKEGKA 169
             G  I VSSM+  E  L+ +    GYG EG   S P  S    L++E+ L+ F E K  K+
Sbjct:    77 GWDICVSSMRKNEKCLVRIESMYGYGDEGCGESIPGNSV---LLFEIELLSFREAK--KS 131

Query:   170 RSDMTVEERIGAADRRKMDGNALFKEEKLEEAMQQYEMAIAYM--GDDFMFQ-LFGKYRD 226
               D T EE++ +A   K +GN  FK+ ++ EA+ +Y+ A+ +    +++  Q L  K ++
Sbjct:   132 IYDYTDEEKVQSAFDIKEEGNEFFKKNEINEAIVKYKEALDFFIHTEEWDDQILLDKKKN 191

Query:   227 MALAVKNPCHLNMAACLLKLKRYEEAIGQCSLVLGEDENNVKALFRRGKARAELGQTDAA 286
             + ++    C+LN+A C  K K Y +AI   S VL  D+NNVKAL++ G A    G  + A
Sbjct:   192 IEIS----CNLNLATCYNKNKDYPKAIDHASKVLKIDKNNVKALYKLGVANMYFGFLEEA 247

Query:   287 REDFLKAGKFAPEDKSIARELRLLAEHEKAVYKKQKEIYKGIFGPRPEPKQKKN 340
             +E+  KA    P +  I     L     K   KK K  + G+F   P  ++KKN
Sbjct:   248 KENLYKAASLNPNNLDIRNSYELCVNKLKEARKKDKLTFGGMFDKGPLYEEKKN 301

GO:0000413 "protein peptidyl-prolyl isomerization" evidence=ISS

GO:0003755 "peptidyl-prolyl cis-trans isomerase activity" evidence=ISS

GO:0005528 "FK506 binding" evidence=ISS

GO:0005575 "cellular_component" evidence=ND

UNIPROTKB|Q7F1F2 OJ1191_A10.119 "cDNA clone:J033121G16, full insert sequence" [Oryza sativa Japonica Group (taxid:39947)]

 Score = 305 (112.4 bits), Expect = 1.6e-28, Sum P(2) = 1.6e-28
 Identities = 88/280 (31%), Positives = 139/280 (49%)

Query:    52 EKVTKQIIKEGHG-QKPSKYSTCFLHYRAWAESTRHKFDDTWLEQQPLEMVLGKEKKEMT 110
             +K+ K+++ EG G ++P++ +   +      +           E +P E    +E+  + 
Sbjct:   278 KKILKKVLTEGTGYERPNEGAVVKVKITGKLQDGTIFTKKGHDEPEPFEFKTDEEEV-ID 336

Query:   111 GLAIGVSSMKAGEHALLHVGWELGYGK-EGSFSFPNVSPMADLVYEVVLIGFDETKEGKA 169
             G+   V +MK GE AL+ +  E  +G  E       V P + ++YEV L+ F + KE   
Sbjct:   337 GIDRAVLNMKNGEVALVTIPPEYAFGSTESKQDLAVVPPNSTVIYEVELVSFVKDKESW- 395

Query:   170 RSDMTVEERIGAADRRKMDGNALFKEEKLEEAMQQYEMAIAYMGDDFMFQLFGKYRDMAL 229
               D+   E+I  A  +K +GNALFK  K   A ++YE A  ++  D  F    K +   L
Sbjct:   396 --DLNNTEKIETAGAKKEEGNALFKLGKYVRASKRYEKAAKFIEYDSSFSEDEKKQSKQL 453

Query:   230 AVKNPCHLNMAACLLKLKRYEEAIGQCSLVLGEDENNVKALFRRGKARAELGQTDAARED 289
              V   C+LN AAC LKLK Y++A   C+ VL  D  NVKAL+RR +A  +L   + A  D
Sbjct:   454 KVT--CNLNNAACKLKLKDYKQAEKLCTKVLELDSQNVKALYRRAQAYMQLADLELAEVD 511

Query:   290 FLKAGKFAPEDKSIARELRLLAEHEKAVYKKQKEIYKGIF 329
               KA +  P+++ +    + L E  K   KK  + Y  +F
Sbjct:   512 IKKALEIDPDNRDVKLTYKNLKEKVKEYNKKDAKFYSNMF 551

GO:0000413 "protein peptidyl-prolyl isomerization" evidence=ISS

GO:0003755 "peptidyl-prolyl cis-trans isomerase activity" evidence=ISS

GO:0005528 "FK506 binding" evidence=ISS

GO:0016020 "membrane" evidence=ISS

GO:0018208 "peptidyl-proline modification" evidence=ISS

UNIPROTKB|Q6K5Q1 P0579G08.8 "Putative peptidylprolyl isomerase" [Oryza sativa Japonica Group (taxid:39947)]

 Score = 302 (111.4 bits), Expect = 7.0e-28, Sum P(2) = 7.0e-28
 Identities = 91/276 (32%), Positives = 137/276 (49%)

Query:    52 EKVTKQIIKEGHG-QKPSKYSTCFLHYRAWAESTRHKFDDTWLEQQPLEMVLGKEKKEMT 110
             +K+ K+I+ EG G ++PS  +   +      E             +P E     E + + 
Sbjct:   327 KKILKKILHEGEGYERPSDCTLVRVKLIGKLEDGTIFVTRGHDGDEPFEFKTD-EDQVVE 385

Query:   111 GLAIGVSSMKAGEHALLHVGWELGYGK-EGSFSFPNVSPMADLVYEVVLIGFDETKEGKA 169
             GL   V SMK GE AL+ +  E  +G  E       V P + + YEV L+ FD+ KE   
Sbjct:   386 GLDKAVLSMKKGEVALVTIPPEYAFGSDETRQDLSVVPPNSTVYYEVELVSFDKEKESWD 445

Query:   170 RSDMTVEERIGAADRRKMDGNALFKEEKLEEAMQQYEMAIAYMGDDFMFQLFGKYRDMAL 229
               + T  E+I AA ++K +GNA FK EK   A ++Y  A+ ++  D  F    + + ++ 
Sbjct:   446 MKENT--EKIEAAAKKKDEGNAWFKMEKYARASKRYGKALNFIQYDSSFS--EEEKQLSK 501

Query:   230 AVKNPCHLNMAACLLKLKRYEEAIGQCSLVLGEDENNVKALFRRGKARAELGQTDAARED 289
              +K  C LN AAC LKLK Y+EA   C+ VL  D  NVKA +RR +A   L   D A  D
Sbjct:   502 PLKVSCKLNNAACKLKLKDYKEAKELCTEVLELDSMNVKAFYRRAQAHMYLVDFDLAELD 561

Query:   290 FLKAGKFAPEDKSIARELRLLAEHEKAVYKKQKEIY 325
               KA +  P+++ +    R L E  K   +K+ ++Y
Sbjct:   562 IKKALEIDPDNRDVKMGYRRLKEKVKEQKRKETKLY 597

GO:0000413 "protein peptidyl-prolyl isomerization" evidence=ISS

GO:0003755 "peptidyl-prolyl cis-trans isomerase activity" evidence=ISS

GO:0005528 "FK506 binding" evidence=ISS

GO:0016020 "membrane" evidence=ISS

GO:0018208 "peptidyl-proline modification" evidence=ISS

ZFIN|ZDB-GENE-030131-514 fkbp4 "FK506 binding protein 4" [Danio rerio (taxid:7955)]

 Score = 304 (112.1 bits), Expect = 5.0e-27, P = 5.0e-27
 Identities = 85/291 (29%), Positives = 150/291 (51%)

Query:    54 VTKQIIKEGHGQ-KPSKYSTCFLHYRAWAESTRHKFDDTWLEQQPLEMVLGKEKKEMTGL 112
             +T++II +G G  KP++ +T       W E + H  +D   +++ L+  +G    E  GL
Sbjct:   145 ITRRIITKGEGYTKPNEGATV----EVWLEGS-H--EDRVFDERELKFEVGDG--ENLGL 195

Query:   113 AIGVS----SMKAGEHALLHVGWELGYGKEGSFSFPNVSPMADLVYEVVLIGFDETKEGK 168
              +GV     +M+ GE AL  +  + G+G  GS  + N+ P A L Y++ +  F++ KE  
Sbjct:   196 PLGVEKALQAMEQGEEALFTIKPKYGFGTAGSEKY-NIPPNATLQYKIKMKAFEKAKESW 254

Query:   169 ARSDMTVEERIGAADRRKMDGNALFKEEKLEEAMQQYEMAIAYMGDDFMFQLFGKYRDMA 228
                +M   E++  +   K  G   FKE K ++A+ QY+  ++++  +   Q   +  + A
Sbjct:   255 ---EMNTIEKLEQSVIVKEKGTQYFKEGKYKQAIVQYKRIVSWLEHESSMQPDDE--EKA 309

Query:   229 LAVKNPCHLNMAACLLKLKRYEEAIGQCSLVLGEDENNVKALFRRGKARAELGQTDAARE 288
              A++   +LN+A C LKL+    A+  C   L  D NN KALFRRG+A   + + D A+ 
Sbjct:   310 KALRLAAYLNLAMCYLKLQDANPALENCDKALELDANNEKALFRRGEALVVMKEFDMAKV 369

Query:   289 DFLKAGKFAPEDKSIARELRLLAEHEKAVYKKQKEIYKGIFGPRPEPKQKK 339
             DF +  +  P +K+   ++ +  +H +  ++K K +Y  +F    E   KK
Sbjct:   370 DFQRVIELYPANKAAKSQISICQKHMREQHEKDKRLYANMFQKFAERDAKK 420

GO:0006457 "protein folding" evidence=IEA

GO:0000413 "protein peptidyl-prolyl isomerization" evidence=IBA

GO:0018208 "peptidyl-proline modification" evidence=IBA

GO:0016020 "membrane" evidence=IBA

GO:0005528 "FK506 binding" evidence=IBA

GO:0003755 "peptidyl-prolyl cis-trans isomerase activity" evidence=IBA

UNIPROTKB|Q7RM28 PY02360 "FK506-binding protein" [Plasmodium yoelii yoelii (taxid:73239)]

 Score = 303 (111.7 bits), Expect = 5.7e-27, P = 5.7e-27
 Identities = 92/292 (31%), Positives = 144/292 (49%)

Query:    54 VTKQIIKEG-HGQK--PSKYSTCFLHYRAWAESTRHKFDDTWLEQQPLEMVLGKEKKEMT 110
             V K I+++G  G++  P K +   +HY    ES    FD +     P +  LG  +  + 
Sbjct:    21 VIKTILRKGDEGEENVPKKGNEVTVHYVGKLESDGSIFDSSRQRDVPFKFHLGNGEV-IK 79

Query:   111 GLAIGVSSMKAGEHALLHVGWELGYGKEG-SFSFPNVSPMADLVYEVVLIGFDETKEGKA 169
             G  I V+SMK  E   + +  + GYGKEG   + P  S    L++E+ L+ F E K  K 
Sbjct:    80 GWDICVASMKKNEKCSVRLDSKYGYGKEGCGETIPGNSV---LIFEIELLSFKEAK--KN 134

Query:   170 RSDMTVEERIGAADRRKMDGNALFKEEKLEEAMQQYEMAIAYM--GDDFMFQLFGKYRDM 227
               D T EE+I AA   K +GN  FK+ ++ EA+ +Y+ A+ Y    D++  +L  K +++
Sbjct:   135 IYDYTDEEKIQAAFELKDEGNEFFKKNEINEAIAKYKEALDYFMHTDEWEDELLEKKQNI 194

Query:   228 ALAVKNPCHLNMAACLLKLKRYEEAIGQCSLVLGEDENNVKALFRRGKARAELGQTDAAR 287
              +     C+LN++ C  K K Y  AI   S VL  D+NNVK L++ G A    G  + A+
Sbjct:   195 QII----CNLNLSTCYNKNKDYPNAIEHASKVLKLDKNNVKGLYKLGVANMNFGFLEEAK 250

Query:   288 EDFLKAGKFAPEDKSIARELRLLAEHEKAVYKKQKEIYKGIFGPRPEPKQKK 339
              +  KA    P++  I     L     K   KK +  + G+F      ++KK
Sbjct:   251 INLYKAASLNPKNLDIRNSYELCIAKLKEARKKDQITFGGMFNKGSLYEEKK 302

GO:0000413 "protein peptidyl-prolyl isomerization" evidence=ISS

GO:0003755 "peptidyl-prolyl cis-trans isomerase activity" evidence=ISS

GO:0005528 "FK506 binding" evidence=ISS

GO:0016020 "membrane" evidence=ISS

GO:0018208 "peptidyl-proline modification" evidence=ISS

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q9LDC0	FKB42_ARATH	5, ., 2, ., 1, ., 8	0.7578	0.9534	0.9534	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

Prediction Level	EC number	Confidence of Prediction
3rd Layer	5.2.1	0.983
4th Layer	5.2.1.8	0.979

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	365
pfam00254	94	pfam00254, FKBP_C, FKBP-type peptidyl-prolyl cis-t	3e-13
cd00189	100	cd00189, TPR, Tetratricopeptide repeat domain; typ	3e-12
COG0545	205	COG0545, FkpA, FKBP-type peptidyl-prolyl cis-trans	2e-09
pfam13414	69	pfam13414, TPR_11, TPR repeat	9e-07
cd00189	100	cd00189, TPR, Tetratricopeptide repeat domain; typ	1e-06
pfam13414	69	pfam13414, TPR_11, TPR repeat	5e-05
COG0457	291	COG0457, NrfG, FOG: TPR repeat [General function p	9e-05
pfam13432	65	pfam13432, TPR_16, Tetratricopeptide repeat	2e-04
TIGR02917	899	TIGR02917, PEP_TPR_lipo, putative PEP-CTERM system	3e-04

>gnl|CDD|215821 pfam00254, FKBP_C, FKBP-type peptidyl-prolyl cis-trans isomerase

 Score = 65.0 bits (159), Expect = 3e-13
 Identities = 32/94 (34%), Positives = 43/94 (45%), Gaps = 3/94 (3%)

Query: 66  KPSKYSTCFLHYRAWAESTRHKFDDTWLEQQPLEMVLGKEKKEMTGLAIGVSSMKAGEHA 125
           K  K  T  +HY    E     FD +    +P E  LG  +  + G   G+  MK GE  
Sbjct: 4   KAKKGDTVTVHYTGKLEDGT-VFDSSKDRGKPFEFTLGSGQV-IPGWDEGLLGMKVGEKR 61

Query: 126 LLHVGWELGYGKEGSFSFPNVSPMADLVYEVVLI 159
            L +  EL YG+EG      + P A LV+EV L+
Sbjct: 62  KLTIPPELAYGEEGLAG-GVIPPNATLVFEVELL 94

Length = 94

>gnl|CDD|238112 cd00189, TPR, Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]- X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and Cdc27p components of the cyclosome/APC, the Pex5p/Pas10p receptor for peroxisomal targeting signals, the Tom70p co-receptor for mitochondrial targeting signals, Ser/Thr phosphatase 5C and the p110 subunit of O-GlcNAc transferase; three copies of the repeat are present here

 Score = 62.0 bits (151), Expect = 3e-12
 Identities = 32/105 (30%), Positives = 48/105 (45%), Gaps = 17/105 (16%)

Query: 189 GNALFKEEKLEEAMQQYEMAIAYMGDDFMFQLFGKYRDMALAVKNPCHLNMAACLLKLKR 248
           GN  +K    +EA++ YE A+         +L     D         + N+AA   KL +
Sbjct: 7   GNLYYKLGDYDEALEYYEKAL---------ELDPDNAD--------AYYNLAAAYYKLGK 49

Query: 249 YEEAIGQCSLVLGEDENNVKALFRRGKARAELGQTDAAREDFLKA 293
           YEEA+      L  D +N KA +  G A  +LG+ + A E + KA
Sbjct: 50  YEEALEDYEKALELDPDNAKAYYNLGLAYYKLGKYEEALEAYEKA 94

Length = 100

>gnl|CDD|223619 COG0545, FkpA, FKBP-type peptidyl-prolyl cis-trans isomerases 1 [Posttranslational modification, protein turnover, chaperones]

 Score = 56.7 bits (137), Expect = 2e-09
 Identities = 34/115 (29%), Positives = 49/115 (42%), Gaps = 6/115 (5%)

Query: 47  VEVLHEKVTKQIIKEGHGQKPSKYSTCFLHYRAWAESTRHKFDDTWLEQQPLEMVLGKEK 106
           V+ L   +  +++K G G  P K  T  +HY          FD ++   QP E  LG   
Sbjct: 96  VKTLPSGLQYKVLKAGDGAAPKKGDTVTVHYTGTLIDGT-VFDSSYDRGQPAEFPLGGVI 154

Query: 107 KEMTGLAIGVSSMKAGEHALLHVGWELGYGKEGSFSFPNVSPMADLVYEVVLIGF 161
               G   G+  MK G    L +  EL YG+ G      + P + LV+EV L+  
Sbjct: 155 P---GWDEGLQGMKVGGKRKLTIPPELAYGERG--VPGVIPPNSTLVFEVELLDV 204

Length = 205

>gnl|CDD|222112 pfam13414, TPR_11, TPR repeat

 Score = 45.4 bits (108), Expect = 9e-07
 Identities = 21/65 (32%), Positives = 29/65 (44%), Gaps = 1/65 (1%)

Query: 235 CHLNMAACLLKLKRYEEAIGQCSLVLGEDENNVKALFRRGKARAELG-QTDAAREDFLKA 293
              N+   L KL  Y+EAI      L  D +N +A +    A  +LG   + A ED  KA
Sbjct: 5   ALKNLGNALFKLGDYDEAIEAYEKALELDPDNAEAYYNLALAYLKLGKDYEEALEDLEKA 64

Query: 294 GKFAP 298
            +  P
Sbjct: 65  LELDP 69

Length = 69

>gnl|CDD|238112 cd00189, TPR, Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]- X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and Cdc27p components of the cyclosome/APC, the Pex5p/Pas10p receptor for peroxisomal targeting signals, the Tom70p co-receptor for mitochondrial targeting signals, Ser/Thr phosphatase 5C and the p110 subunit of O-GlcNAc transferase; three copies of the repeat are present here

 Score = 46.2 bits (110), Expect = 1e-06
 Identities = 26/96 (27%), Positives = 46/96 (47%), Gaps = 6/96 (6%)

Query: 237 LNMAACLLKLKRYEEAIGQCSLVLGEDENNVKALFRRGKARAELGQTDAAREDFLKAGKF 296
           LN+     KL  Y+EA+      L  D +N  A +    A  +LG+ + A ED+ KA + 
Sbjct: 4   LNLGNLYYKLGDYDEALEYYEKALELDPDNADAYYNLAAAYYKLGKYEEALEDYEKALEL 63

Query: 297 APED----KSIARELRLLAEHEKAV--YKKQKEIYK 326
            P++     ++      L ++E+A+  Y+K  E+  
Sbjct: 64  DPDNAKAYYNLGLAYYKLGKYEEALEAYEKALELDP 99

Length = 100

>gnl|CDD|222112 pfam13414, TPR_11, TPR repeat

 Score = 40.4 bits (95), Expect = 5e-05
 Identities = 25/80 (31%), Positives = 34/80 (42%), Gaps = 18/80 (22%)

Query: 182 ADRRKMDGNALFKEEKLEEAMQQYEMAIAYMGDDFMFQLFGKYRDMALAVKNPCHLNMAA 241
           A+  K  GNALFK    +EA++ YE A+    D+                    + N+A 
Sbjct: 3   AEALKNLGNALFKLGDYDEAIEAYEKALELDPDNAE-----------------AYYNLAL 45

Query: 242 CLLKL-KRYEEAIGQCSLVL 260
             LKL K YEEA+      L
Sbjct: 46  AYLKLGKDYEEALEDLEKAL 65

Length = 69

>gnl|CDD|223533 COG0457, NrfG, FOG: TPR repeat [General function prediction only]

 Score = 43.3 bits (100), Expect = 9e-05
 Identities = 36/147 (24%), Positives = 56/147 (38%), Gaps = 9/147 (6%)

Query: 176 EERIGAADRRKMDGNALFKEEKLEEAMQQYEMAIAYMGDDFMFQLFGKYRDMALAVKNPC 235
           E+ +           AL     L EA+ +YE A+             K   +        
Sbjct: 154 EKALELDPELNELAEALLALGALLEALGRYEEALEL---------LEKALKLNPDDDAEA 204

Query: 236 HLNMAACLLKLKRYEEAIGQCSLVLGEDENNVKALFRRGKARAELGQTDAAREDFLKAGK 295
            LN+    LKL +YEEA+      L  D +N +AL+       ELG+ + A E   KA +
Sbjct: 205 LLNLGLLYLKLGKYEEALEYYEKALELDPDNAEALYNLALLLLELGRYEEALEALEKALE 264

Query: 296 FAPEDKSIARELRLLAEHEKAVYKKQK 322
             P+  ++   L LL      + +K  
Sbjct: 265 LDPDLYNLGLALLLLLAEALELLEKAD 291

Length = 291

>gnl|CDD|222123 pfam13432, TPR_16, Tetratricopeptide repeat

 Score = 38.8 bits (91), Expect = 2e-04
 Identities = 14/58 (24%), Positives = 21/58 (36%)

Query: 243 LLKLKRYEEAIGQCSLVLGEDENNVKALFRRGKARAELGQTDAAREDFLKAGKFAPED 300
            L+   Y+EA+      L       +AL   G+A    G+   A      A    P+D
Sbjct: 7   ALRAGDYDEALAALEAALARYPLAAEALLLLGEALLRQGRLAEAAALLRAALAADPDD 64

Length = 65

>gnl|CDD|234059 TIGR02917, PEP_TPR_lipo, putative PEP-CTERM system TPR-repeat lipoprotein

 Score = 42.4 bits (100), Expect = 3e-04
 Identities = 24/72 (33%), Positives = 37/72 (51%)

Query: 239 MAACLLKLKRYEEAIGQCSLVLGEDENNVKALFRRGKARAELGQTDAAREDFLKAGKFAP 298
           +A+  L+L R +EAI   S  LG D ++  AL   G+A   LG  + A E   KA +  P
Sbjct: 335 LASIQLRLGRVDEAIATLSPALGLDPDDPAALSLLGEAYLALGDFEKAAEYLAKATELDP 394

Query: 299 EDKSIARELRLL 310
           E+ +   +L + 
Sbjct: 395 ENAAARTQLGIS 406

This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator. Length = 899

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	365
KOG0543	397	consensus FKBP-type peptidyl-prolyl cis-trans isom	100.0
KOG0545	329	consensus Aryl-hydrocarbon receptor-interacting pr	100.0
KOG0544	108	consensus FKBP-type peptidyl-prolyl cis-trans isom	99.97
COG0545	205	FkpA FKBP-type peptidyl-prolyl cis-trans isomerase	99.97
KOG0549	188	consensus FKBP-type peptidyl-prolyl cis-trans isom	99.92
PRK11570	206	peptidyl-prolyl cis-trans isomerase; Provisional	99.92
KOG0552	226	consensus FKBP-type peptidyl-prolyl cis-trans isom	99.9
PRK10902	269	FKBP-type peptidyl-prolyl cis-trans isomerase; Pro	99.89
TIGR03516	177	ppisom_GldI peptidyl-prolyl isomerase, gliding mot	99.89
KOG0553	304	consensus TPR repeat-containing protein [General f	99.87
KOG4234	271	consensus TPR repeat-containing protein [General f	99.85
PF00254	94	FKBP_C: FKBP-type peptidyl-prolyl cis-trans isomer	99.82
KOG0543	397	consensus FKBP-type peptidyl-prolyl cis-trans isom	99.77
KOG0550	486	consensus Molecular chaperone (DnaJ superfamily) [	99.76
KOG0547	606	consensus Translocase of outer mitochondrial membr	99.74
KOG0548	539	consensus Molecular co-chaperone STI1 [Posttransla	99.71
KOG4648	536	consensus Uncharacterized conserved protein, conta	99.69
PLN03088	356	SGT1, suppressor of G2 allele of SKP1; Provisional	99.63
TIGR00990	615	3a0801s09 mitochondrial precursor proteins import	99.63
KOG0551	390	consensus Hsp90 co-chaperone CNS1 (contains TPR re	99.62
PRK15095	156	FKBP-type peptidyl-prolyl cis-trans isomerase; Pro	99.6
PRK15359	144	type III secretion system chaperone protein SscB;	99.59
KOG0548	539	consensus Molecular co-chaperone STI1 [Posttransla	99.53
TIGR02552	135	LcrH_SycD type III secretion low calcium response	99.48
KOG4642	284	consensus Chaperone-dependent E3 ubiquitin protein	99.48
KOG0624	504	consensus dsRNA-activated protein kinase inhibitor	99.47
PRK15363	157	pathogenicity island 2 chaperone protein SscA; Pro	99.46
KOG0376	476	consensus Serine-threonine phosphatase 2A, catalyt	99.44
COG1047	174	SlpA FKBP-type peptidyl-prolyl cis-trans isomerase	99.42
TIGR00990	615	3a0801s09 mitochondrial precursor proteins import	99.4
KOG4626	966	consensus O-linked N-acetylglucosamine transferase	99.4
PRK10737	196	FKBP-type peptidyl-prolyl cis-trans isomerase; Pro	99.39
PRK11189	296	lipoprotein NlpI; Provisional	99.39
PRK15359	144	type III secretion system chaperone protein SscB;	99.36
KOG4626	966	consensus O-linked N-acetylglucosamine transferase	99.36
COG3063	250	PilF Tfp pilus assembly protein PilF [Cell motilit	99.35
KOG0546	372	consensus HSP90 co-chaperone CPR7/Cyclophilin [Pos	99.33
PRK10370	198	formate-dependent nitrite reductase complex subuni	99.33
TIGR02795	119	tol_pal_ybgF tol-pal system protein YbgF. Members	99.29
PF13414	69	TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A	99.28
PRK10370	198	formate-dependent nitrite reductase complex subuni	99.26
KOG1155	559	consensus Anaphase-promoting complex (APC), Cdc23	99.23
KOG0624	504	consensus dsRNA-activated protein kinase inhibitor	99.23
KOG1126	638	consensus DNA-binding cell division cycle control	99.22
PRK12370	553	invasion protein regulator; Provisional	99.2
PRK09782	987	bacteriophage N4 receptor, outer membrane subunit;	99.2
PRK02603	172	photosystem I assembly protein Ycf3; Provisional	99.18
PRK09782	987	bacteriophage N4 receptor, outer membrane subunit;	99.18
TIGR03302	235	OM_YfiO outer membrane assembly lipoprotein YfiO.	99.18
TIGR02552	135	LcrH_SycD type III secretion low calcium response	99.18
KOG1155	559	consensus Anaphase-promoting complex (APC), Cdc23	99.17
KOG0547	606	consensus Translocase of outer mitochondrial membr	99.17
KOG1126	638	consensus DNA-binding cell division cycle control	99.16
PRK11189	296	lipoprotein NlpI; Provisional	99.16
PRK12370	553	invasion protein regulator; Provisional	99.16
PF13432	65	TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL	99.16
PF12895	84	Apc3: Anaphase-promoting complex, cyclosome, subun	99.15
TIGR02521	234	type_IV_pilW type IV pilus biogenesis/stability pr	99.15
cd00189	100	TPR Tetratricopeptide repeat domain; typically con	99.15
PF13414	69	TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A	99.12
PRK15179	694	Vi polysaccharide biosynthesis protein TviE; Provi	99.12
PRK15174	656	Vi polysaccharide export protein VexE; Provisional	99.11
TIGR02521	234	type_IV_pilW type IV pilus biogenesis/stability pr	99.11
CHL00033	168	ycf3 photosystem I assembly protein Ycf3	99.09
PRK15331	165	chaperone protein SicA; Provisional	99.08
PLN02789	320	farnesyltranstransferase	99.05
PRK15174	656	Vi polysaccharide export protein VexE; Provisional	99.03
KOG1308	377	consensus Hsp70-interacting protein Hip/Transient	99.03
KOG0553	304	consensus TPR repeat-containing protein [General f	99.03
COG5010	257	TadD Flp pilus assembly protein TadD, contains TPR	99.02
PRK10803	263	tol-pal system protein YbgF; Provisional	98.99
KOG1125	579	consensus TPR repeat-containing protein [General f	98.97
PRK11788	389	tetratricopeptide repeat protein; Provisional	98.97
TIGR02917	899	PEP_TPR_lipo putative PEP-CTERM system TPR-repeat	98.96
KOG2076	895	consensus RNA polymerase III transcription factor	98.96
PRK11447	1157	cellulose synthase subunit BcsC; Provisional	98.96
KOG4555	175	consensus TPR repeat-containing protein [Function	98.96
PRK11447	1157	cellulose synthase subunit BcsC; Provisional	98.96
PLN02789	320	farnesyltranstransferase	98.96
PLN03088	356	SGT1, suppressor of G2 allele of SKP1; Provisional	98.96
KOG1173	611	consensus Anaphase-promoting complex (APC), Cdc16	98.95
PRK10866	243	outer membrane biogenesis protein BamD; Provisiona	98.95
PF13371	73	TPR_9: Tetratricopeptide repeat	98.93
KOG0550	486	consensus Molecular chaperone (DnaJ superfamily) [	98.93
COG3063	250	PilF Tfp pilus assembly protein PilF [Cell motilit	98.93
PF13429	280	TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2	98.92
TIGR02917	899	PEP_TPR_lipo putative PEP-CTERM system TPR-repeat	98.92
PF13512	142	TPR_18: Tetratricopeptide repeat	98.88
PF14559	68	TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN	98.88
TIGR03302	235	OM_YfiO outer membrane assembly lipoprotein YfiO.	98.88
PF13525	203	YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M	98.87
cd00189	100	TPR Tetratricopeptide repeat domain; typically con	98.87
PRK10049	765	pgaA outer membrane protein PgaA; Provisional	98.87
KOG2003	840	consensus TPR repeat-containing protein [General f	98.85
PRK11788	389	tetratricopeptide repeat protein; Provisional	98.85
KOG1125	579	consensus TPR repeat-containing protein [General f	98.84
KOG2002	1018	consensus TPR-containing nuclear phosphoprotein th	98.84
PRK15363	157	pathogenicity island 2 chaperone protein SscA; Pro	98.82
PF13432	65	TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL	98.79
COG4235	287	Cytochrome c biogenesis factor [Posttranslational	98.79
COG4785	297	NlpI Lipoprotein NlpI, contains TPR repeats [Gener	98.78
PRK15179	694	Vi polysaccharide biosynthesis protein TviE; Provi	98.78
COG1729	262	Uncharacterized protein conserved in bacteria [Fun	98.76
CHL00033	168	ycf3 photosystem I assembly protein Ycf3	98.76
PRK01490	435	tig trigger factor; Provisional	98.75
TIGR02795	119	tol_pal_ybgF tol-pal system protein YbgF. Members	98.74
PRK10049	765	pgaA outer membrane protein PgaA; Provisional	98.72
PRK14574	822	hmsH outer membrane protein; Provisional	98.71
TIGR00115	408	tig trigger factor. Trigger factor is a ribosome-a	98.71
PF14559	68	TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN	98.7
COG5010	257	TadD Flp pilus assembly protein TadD, contains TPR	98.69
PF06552	186	TOM20_plant: Plant specific mitochondrial import r	98.68
PRK02603	172	photosystem I assembly protein Ycf3; Provisional	98.68
PLN03098	453	LPA1 LOW PSII ACCUMULATION1; Provisional	98.67
KOG2002	1018	consensus TPR-containing nuclear phosphoprotein th	98.67
KOG1310	758	consensus WD40 repeat protein [General function pr	98.67
KOG4162	799	consensus Predicted calmodulin-binding protein [Si	98.66
PF09976	145	TPR_21: Tetratricopeptide repeat; InterPro: IPR018	98.65
KOG1173	611	consensus Anaphase-promoting complex (APC), Cdc16	98.59
COG4783	484	Putative Zn-dependent protease, contains TPR repea	98.59
PF13371	73	TPR_9: Tetratricopeptide repeat	98.58
PRK14720	906	transcript cleavage factor/unknown domain fusion p	98.58
PF13424	78	TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15	98.57
KOG2076	895	consensus RNA polymerase III transcription factor	98.57
KOG2003	840	consensus TPR repeat-containing protein [General f	98.55
KOG1128	777	consensus Uncharacterized conserved protein, conta	98.54
PF09976	145	TPR_21: Tetratricopeptide repeat; InterPro: IPR018	98.53
PF13429	280	TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2	98.53
PF12688	120	TPR_5: Tetratrico peptide repeat	98.51
COG2956	389	Predicted N-acetylglucosaminyl transferase [Carboh	98.5
cd05804	355	StaR_like StaR_like; a well-conserved protein foun	98.48
COG4235	287	Cytochrome c biogenesis factor [Posttranslational	98.48
KOG1840	508	consensus Kinesin light chain [Cytoskeleton]	98.48
PF13424	78	TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15	98.47
PF12569	517	NARP1: NMDA receptor-regulated protein 1 ; InterPr	98.44
PLN03098	453	LPA1 LOW PSII ACCUMULATION1; Provisional	98.44
KOG1129	478	consensus TPR repeat-containing protein [General f	98.42
PF12895	84	Apc3: Anaphase-promoting complex, cyclosome, subun	98.34
PF03704	146	BTAD: Bacterial transcriptional activator domain;	98.33
COG4783	484	Putative Zn-dependent protease, contains TPR repea	98.32
KOG3060	289	consensus Uncharacterized conserved protein [Funct	98.31
PRK10803	263	tol-pal system protein YbgF; Provisional	98.31
TIGR00540	409	hemY_coli hemY protein. This is an uncharacterized	98.3
COG0544	441	Tig FKBP-type peptidyl-prolyl cis-trans isomerase	98.3
KOG1156	700	consensus N-terminal acetyltransferase [Chromatin	98.28
PRK10747	398	putative protoheme IX biogenesis protein; Provisio	98.28
cd05804	355	StaR_like StaR_like; a well-conserved protein foun	98.27
COG2956	389	Predicted N-acetylglucosaminyl transferase [Carboh	98.26
PRK10153	517	DNA-binding transcriptional activator CadC; Provis	98.25
PRK14574	822	hmsH outer membrane protein; Provisional	98.23
TIGR00540	409	hemY_coli hemY protein. This is an uncharacterized	98.21
PF12688	120	TPR_5: Tetratrico peptide repeat	98.21
PRK11906	458	transcriptional regulator; Provisional	98.21
PF00515	34	TPR_1: Tetratricopeptide repeat; InterPro: IPR0014	98.21
PF14938	282	SNAP: Soluble NSF attachment protein, SNAP; PDB: 1	98.2
PRK14720	906	transcript cleavage factor/unknown domain fusion p	98.19
COG4105	254	ComL DNA uptake lipoprotein [General function pred	98.18
KOG4151	748	consensus Myosin assembly protein/sexual cycle pro	98.16
KOG1129	478	consensus TPR repeat-containing protein [General f	98.15
KOG1840	508	consensus Kinesin light chain [Cytoskeleton]	98.15
PF13431	34	TPR_17: Tetratricopeptide repeat	98.13
KOG1128	777	consensus Uncharacterized conserved protein, conta	98.11
KOG4234	271	consensus TPR repeat-containing protein [General f	98.1
PF09295	395	ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); Inter	98.08
PF07719	34	TPR_2: Tetratricopeptide repeat; InterPro: IPR0131	98.07
PF14938	282	SNAP: Soluble NSF attachment protein, SNAP; PDB: 1	98.07
KOG4162	799	consensus Predicted calmodulin-binding protein [Si	98.06
PF00515	34	TPR_1: Tetratricopeptide repeat; InterPro: IPR0014	98.04
PRK10747	398	putative protoheme IX biogenesis protein; Provisio	98.04
PF15015	569	NYD-SP12_N: Spermatogenesis-associated, N-terminal	98.03
PF13428	44	TPR_14: Tetratricopeptide repeat	98.01
KOG4648	536	consensus Uncharacterized conserved protein, conta	98.0
KOG3060	289	consensus Uncharacterized conserved protein [Funct	97.97
PF13525	203	YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M	97.94
PRK11906	458	transcriptional regulator; Provisional	97.93
PF09295	395	ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); Inter	97.93
PF04733	290	Coatomer_E: Coatomer epsilon subunit; InterPro: IP	97.92
KOG1174	564	consensus Anaphase-promoting complex (APC), subuni	97.92
COG1729	262	Uncharacterized protein conserved in bacteria [Fun	97.92
KOG1174	564	consensus Anaphase-promoting complex (APC), subuni	97.92
PF13428	44	TPR_14: Tetratricopeptide repeat	97.91
COG4785	297	NlpI Lipoprotein NlpI, contains TPR repeats [Gener	97.89
PF12569	517	NARP1: NMDA receptor-regulated protein 1 ; InterPr	97.88
PRK10153	517	DNA-binding transcriptional activator CadC; Provis	97.88
KOG1127	1238	consensus TPR repeat-containing protein [RNA proce	97.86
PRK15331	165	chaperone protein SicA; Provisional	97.84
PF12968	144	DUF3856: Domain of Unknown Function (DUF3856); Int	97.84
PF14853	53	Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repe	97.83
PRK10866	243	outer membrane biogenesis protein BamD; Provisiona	97.82
KOG4555	175	consensus TPR repeat-containing protein [Function	97.81
COG4700	251	Uncharacterized protein conserved in bacteria cont	97.77
KOG1156	700	consensus N-terminal acetyltransferase [Chromatin	97.77
PF07719	34	TPR_2: Tetratricopeptide repeat; InterPro: IPR0131	97.74
KOG4814	872	consensus Uncharacterized conserved protein [Funct	97.73
PF04733	290	Coatomer_E: Coatomer epsilon subunit; InterPro: IP	97.7
PRK10941	269	hypothetical protein; Provisional	97.69
KOG4507	886	consensus Uncharacterized conserved protein, conta	97.68
KOG1130	639	consensus Predicted G-alpha GTPase interaction pro	97.65
PF13181	34	TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_	97.65
KOG1586	288	consensus Protein required for fusion of vesicles	97.62
KOG0495	913	consensus HAT repeat protein [RNA processing and m	97.61
KOG1127	1238	consensus TPR repeat-containing protein [RNA proce	97.6
KOG3785	557	consensus Uncharacterized conserved protein [Funct	97.55
KOG0495	913	consensus HAT repeat protein [RNA processing and m	97.53
KOG4642	284	consensus Chaperone-dependent E3 ubiquitin protein	97.47
PF13512	142	TPR_18: Tetratricopeptide repeat	97.44
PF13431	34	TPR_17: Tetratricopeptide repeat	97.42
KOG1130	639	consensus Predicted G-alpha GTPase interaction pro	97.42
KOG2376	652	consensus Signal recognition particle, subunit Srp	97.41
PF14853	53	Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repe	97.37
COG2976	207	Uncharacterized protein conserved in bacteria [Fun	97.31
PF13181	34	TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_	97.31
COG3118	304	Thioredoxin domain-containing protein [Posttransla	97.3
KOG3785	557	consensus Uncharacterized conserved protein [Funct	97.21
KOG2376	652	consensus Signal recognition particle, subunit Srp	97.19
KOG0549	188	consensus FKBP-type peptidyl-prolyl cis-trans isom	97.18
KOG1941	518	consensus Acetylcholine receptor-associated protei	97.16
KOG3364	149	consensus Membrane protein involved in organellar	97.16
COG0457	291	NrfG FOG: TPR repeat [General function prediction	97.14
PF06552	186	TOM20_plant: Plant specific mitochondrial import r	97.12
KOG3081	299	consensus Vesicle coat complex COPI, epsilon subun	97.1
PF13174	33	TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_	97.06
COG3071	400	HemY Uncharacterized enzyme of heme biosynthesis [	97.05
KOG2053	932	consensus Mitochondrial inheritance and actin cyto	97.04
COG0457	291	NrfG FOG: TPR repeat [General function prediction	96.98
KOG0376	476	consensus Serine-threonine phosphatase 2A, catalyt	96.97
KOG2796	366	consensus Uncharacterized conserved protein [Funct	96.9
PF13174	33	TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_	96.9
smart00028	34	TPR Tetratricopeptide repeats. Repeats present in	96.81
smart00028	34	TPR Tetratricopeptide repeats. Repeats present in	96.8
KOG0551	390	consensus Hsp90 co-chaperone CNS1 (contains TPR re	96.78
PF13176	36	TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_	96.76
KOG0545	329	consensus Aryl-hydrocarbon receptor-interacting pr	96.72
PF13176	36	TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_	96.71
COG4105	254	ComL DNA uptake lipoprotein [General function pred	96.71
PF08631	278	SPO22: Meiosis protein SPO22/ZIP4 like; InterPro:	96.66
KOG3824	472	consensus Huntingtin interacting protein HYPE [Gen	96.65
PF10300	468	DUF3808: Protein of unknown function (DUF3808); In	96.63
KOG4340	459	consensus Uncharacterized conserved protein [Funct	96.59
KOG1941	518	consensus Acetylcholine receptor-associated protei	96.57
KOG1308	377	consensus Hsp70-interacting protein Hip/Transient	96.54
KOG4507	886	consensus Uncharacterized conserved protein, conta	96.5
PF03704	146	BTAD: Bacterial transcriptional activator domain;	96.47
COG2912	269	Uncharacterized conserved protein [Function unknow	96.46
KOG1915	677	consensus Cell cycle control protein (crooked neck	96.46
KOG2396	568	consensus HAT (Half-A-TPR) repeat-containing prote	96.44
PLN03081	697	pentatricopeptide (PPR) repeat-containing protein;	96.34
KOG2796	366	consensus Uncharacterized conserved protein [Funct	96.33
COG3629	280	DnrI DNA-binding transcriptional activator of the	96.32
PF05843	280	Suf: Suppressor of forked protein (Suf); InterPro:	96.29
KOG3824	472	consensus Huntingtin interacting protein HYPE [Gen	96.29
PF09986	214	DUF2225: Uncharacterized protein conserved in bact	96.25
PF04184	539	ST7: ST7 protein; InterPro: IPR007311 The ST7 (for	96.25
KOG1586	288	consensus Protein required for fusion of vesicles	96.21
COG4700	251	Uncharacterized protein conserved in bacteria cont	96.16
PF14561	90	TPR_20: Tetratricopeptide repeat; PDB: 3QOU_A 2R5S	96.16
COG4976	287	Predicted methyltransferase (contains TPR repeat)	95.96
PLN03077	857	Protein ECB2; Provisional	95.92
PRK04841	903	transcriptional regulator MalT; Provisional	95.91
KOG2610	491	consensus Uncharacterized conserved protein [Funct	95.91
KOG4340	459	consensus Uncharacterized conserved protein [Funct	95.9
PLN03081	697	pentatricopeptide (PPR) repeat-containing protein;	95.87
PLN03218	1060	maturation of RBCL 1; Provisional	95.85
PLN03218	1060	maturation of RBCL 1; Provisional	95.79
PF10300	468	DUF3808: Protein of unknown function (DUF3808); In	95.74
KOG1915	677	consensus Cell cycle control protein (crooked neck	95.67
KOG3081	299	consensus Vesicle coat complex COPI, epsilon subun	95.67
PLN03077	857	Protein ECB2; Provisional	95.6
KOG1070	1710	consensus rRNA processing protein Rrp5 [RNA proces	95.6
COG3071	400	HemY Uncharacterized enzyme of heme biosynthesis [	95.57
PRK04841	903	transcriptional regulator MalT; Provisional	95.5
PF10602	177	RPN7: 26S proteasome subunit RPN7; InterPro: IPR01	95.47
KOG1585	308	consensus Protein required for fusion of vesicles	95.21
COG3947	361	Response regulator containing CheY-like receiver a	95.15
PF13374	42	TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT	95.14
PF10579	80	Rapsyn_N: Rapsyn N-terminal myristoylation and lin	95.08
KOG0686	466	consensus COP9 signalosome, subunit CSN1 [Posttran	95.05
KOG2471	696	consensus TPR repeat-containing protein [General f	95.02
PF04781	111	DUF627: Protein of unknown function (DUF627); Inte	95.01
KOG1070	1710	consensus rRNA processing protein Rrp5 [RNA proces	94.85
PF05843	280	Suf: Suppressor of forked protein (Suf); InterPro:	94.75
PF02259	352	FAT: FAT domain; InterPro: IPR003151 The FAT domai	94.74
KOG2471	696	consensus TPR repeat-containing protein [General f	94.74
COG2976	207	Uncharacterized protein conserved in bacteria [Fun	94.66
PF07079	549	DUF1347: Protein of unknown function (DUF1347); In	94.64
KOG3364	149	consensus Membrane protein involved in organellar	94.46
PF08631	278	SPO22: Meiosis protein SPO22/ZIP4 like; InterPro:	94.45
KOG1585	308	consensus Protein required for fusion of vesicles	94.41
KOG2053	932	consensus Mitochondrial inheritance and actin cyto	94.36
COG4976	287	Predicted methyltransferase (contains TPR repeat)	94.33
PF04184	539	ST7: ST7 protein; InterPro: IPR007311 The ST7 (for	94.31
PRK10941	269	hypothetical protein; Provisional	94.26
PF13374	42	TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT	93.87
PF10516	38	SHNi-TPR: SHNi-TPR; InterPro: IPR019544 The tetrat	93.72
PF14561	90	TPR_20: Tetratricopeptide repeat; PDB: 3QOU_A 2R5S	93.69
KOG2300	629	consensus Uncharacterized conserved protein [Funct	93.45
KOG4814	872	consensus Uncharacterized conserved protein [Funct	93.19
PRK13184	932	pknD serine/threonine-protein kinase; Reviewed	93.03
PF12862	94	Apc5: Anaphase-promoting complex subunit 5	92.98
KOG2610	491	consensus Uncharacterized conserved protein [Funct	92.9
PF10373	278	EST1_DNA_bind: Est1 DNA/RNA binding domain; InterP	92.89
PF04910	360	Tcf25: Transcriptional repressor TCF25; InterPro:	92.05
PF09613	160	HrpB1_HrpK: Bacterial type III secretion protein (	91.96
PF07720	36	TPR_3: Tetratricopeptide repeat; InterPro: IPR0117	91.91
PF12862	94	Apc5: Anaphase-promoting complex subunit 5	91.88
PF02259	352	FAT: FAT domain; InterPro: IPR003151 The FAT domai	91.77
COG5191	435	Uncharacterized conserved protein, contains HAT (H	91.32
PF13281	374	DUF4071: Domain of unknown function (DUF4071)	91.22
PF09613	160	HrpB1_HrpK: Bacterial type III secretion protein (	91.04
PF09986	214	DUF2225: Uncharacterized protein conserved in bact	90.97
PF12968	144	DUF3856: Domain of Unknown Function (DUF3856); Int	90.95
cd02682	75	MIT_AAA_Arch MIT: domain contained within Microtub	90.87
KOG1550	552	consensus Extracellular protein SEL-1 and related	90.67
TIGR03504	44	FimV_Cterm FimV C-terminal domain. This protein is	90.46
PF04212	69	MIT: MIT (microtubule interacting and transport) d	90.35
COG3118	304	Thioredoxin domain-containing protein [Posttransla	90.32
PF10516	38	SHNi-TPR: SHNi-TPR; InterPro: IPR019544 The tetrat	90.28
cd02681	76	MIT_calpain7_1 MIT: domain contained within Microt	90.06
PF10952	140	DUF2753: Protein of unknown function (DUF2753); In	89.94
KOG2300	629	consensus Uncharacterized conserved protein [Funct	89.45
PF10602	177	RPN7: 26S proteasome subunit RPN7; InterPro: IPR01	89.33
PF11817	247	Foie-gras_1: Foie gras liver health family 1; Inte	88.93
PF06957	422	COPI_C: Coatomer (COPI) alpha subunit C-terminus;	88.88
PF13281	374	DUF4071: Domain of unknown function (DUF4071)	88.79
COG4455	273	ImpE Protein of avirulence locus involved in tempe	88.55
PF10345	608	Cohesin_load: Cohesin loading factor; InterPro: IP	88.07
PF07721	26	TPR_4: Tetratricopeptide repeat; InterPro: IPR0117	88.04
KOG0530	318	consensus Protein farnesyltransferase, alpha subun	87.87
KOG3617	1416	consensus WD40 and TPR repeat-containing protein [	87.86
cd02683	77	MIT_1 MIT: domain contained within Microtubule Int	87.66
PF08424	321	NRDE-2: NRDE-2, necessary for RNA interference; In	87.59
COG3914	620	Spy Predicted O-linked N-acetylglucosamine transfe	87.55
COG3914	620	Spy Predicted O-linked N-acetylglucosamine transfe	86.88
PF07721	26	TPR_4: Tetratricopeptide repeat; InterPro: IPR0117	86.28
PF10373	278	EST1_DNA_bind: Est1 DNA/RNA binding domain; InterP	86.21
COG3898	531	Uncharacterized membrane-bound protein [Function u	86.2
cd02684	75	MIT_2 MIT: domain contained within Microtubule Int	86.12
PF10255	404	Paf67: RNA polymerase I-associated factor PAF67; I	85.9
PF15015	569	NYD-SP12_N: Spermatogenesis-associated, N-terminal	85.65
cd02679	79	MIT_spastin MIT: domain contained within Microtubu	85.43
KOG2047	835	consensus mRNA splicing factor [RNA processing and	85.01
COG2912	269	Uncharacterized conserved protein [Function unknow	85.01
KOG1550	552	consensus Extracellular protein SEL-1 and related	84.8
COG0790	292	FOG: TPR repeat, SEL1 subfamily [General function	84.71
KOG2422	665	consensus Uncharacterized conserved protein [Funct	84.58
PF08424	321	NRDE-2: NRDE-2, necessary for RNA interference; In	84.25
COG3898	531	Uncharacterized membrane-bound protein [Function u	83.97
PF10345	608	Cohesin_load: Cohesin loading factor; InterPro: IP	83.63
KOG0985	1666	consensus Vesicle coat protein clathrin, heavy cha	83.46
PF14863	141	Alkyl_sulf_dimr: Alkyl sulfatase dimerisation; PDB	83.31
TIGR03504	44	FimV_Cterm FimV C-terminal domain. This protein is	83.22
PF04781	111	DUF627: Protein of unknown function (DUF627); Inte	83.19
cd02677	75	MIT_SNX15 MIT: domain contained within Microtubule	83.04
PF07720	36	TPR_3: Tetratricopeptide repeat; InterPro: IPR0117	82.93
cd02680	75	MIT_calpain7_2 MIT: domain contained within Microt	82.92
TIGR02561	153	HrpB1_HrpK type III secretion protein HrpB1/HrpK.	82.65
PF14863	141	Alkyl_sulf_dimr: Alkyl sulfatase dimerisation; PDB	81.71
PF07163	309	Pex26: Pex26 protein; InterPro: IPR010797 This fam	81.39
cd02678	75	MIT_VPS4 MIT: domain contained within Microtubule	81.34
KOG3617	1416	consensus WD40 and TPR repeat-containing protein [	81.16
KOG1839	1236	consensus Uncharacterized protein CLU1/cluA/TIF31	80.55
KOG2047	835	consensus mRNA splicing factor [RNA processing and	80.48
PRK13184	932	pknD serine/threonine-protein kinase; Reviewed	80.44
PF10579	80	Rapsyn_N: Rapsyn N-terminal myristoylation and lin	80.39
PF09670	379	Cas_Cas02710: CRISPR-associated protein (Cas_Cas02	80.34

>KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]

Probab=100.00  E-value=2.1e-55  Score=404.49  Aligned_cols=318  Identities=37%  Similarity=0.508  Sum_probs=278.7

Q ss_pred             CCCCCCCCCCCc--eeeeCCCeEEEEEecCCC-C-CCCCCCEEEEEEEEEEcCCCeeeccCcCCCCcceeecCCCCchhh
Q 017811           35 QDGDGPPKVDSE--VEVLHEKVTKQIIKEGHG-Q-KPSKYSTCFLHYRAWAESTRHKFDDTWLEQQPLEMVLGKEKKEMT  110 (365)
Q Consensus        35 ~~~~~~~~~~~~--~~~~~~gv~k~v~~~G~g-~-~p~~g~~v~v~y~~~~~~~g~~fd~s~~~~~p~~f~lg~~~~~i~  110 (365)
                      ....+|+..+..  +.+++++|.|+|+++|.| . .|..|..|+|||.|++.+ + +|+++.   .+|.|.+|++..||.
T Consensus        65 ~pp~ip~~a~l~fe~el~Dg~iiKriir~G~gd~~~P~~g~~V~v~~~G~~~~-~-~f~~~~---~~fe~~~Ge~~~vi~  139 (397)
T KOG0543|consen   65 SPPKIPSNATLLFEVELLDGGIIKRIIREGEGDYSRPNKGAVVKVHLEGELED-G-VFDQRE---LRFEFGEGEDIDVIE  139 (397)
T ss_pred             CCCCCCCCcceeeeecccCCceEEeeeecCCCCCCCCCCCcEEEEEEEEEECC-c-ceeccc---cceEEecCCccchhH
Confidence            333344444443  344499999999999999 3 999999999999999986 4 888763   348888888437999


Q ss_pred             hHHHHHhcCCcCcEEEEEeccccccCCCCCCCCCCCCCCCcEEEEEEEEeeecCcccccCCCCCHHHHHHHHHHhhhhhh
Q 017811          111 GLAIGVSSMKAGEHALLHVGWELGYGKEGSFSFPNVSPMADLVYEVVLIGFDETKEGKARSDMTVEERIGAADRRKMDGN  190 (365)
Q Consensus       111 g~e~~l~~Mk~GE~~~~~i~~~~~yg~~g~~~~~~ip~~~~l~~~iel~~~~~~~~~~~~~~~~~~e~~~~a~~~k~~G~  190 (365)
                      ||+.||++|++||++.|+|+|.|+||+.+.. ++.||||++|.|+|+|+++....  ...|.+..++++..|...++.||
T Consensus       140 Gle~al~~M~~GE~a~v~i~~~YayG~~~~~-~p~IPPnA~l~yEVeL~~f~~~~--~~s~~~~~~e~l~~A~~~ke~Gn  216 (397)
T KOG0543|consen  140 GLEIALRMMKVGEVALVTIDPKYAYGEEGGE-PPLIPPNATLLYEVELLDFELKE--DESWKMFAEERLEAADRKKERGN  216 (397)
T ss_pred             HHHHHHHhcCccceEEEEeCcccccCCCCCC-CCCCCCCceEEEEEEEEeeecCc--ccccccchHHHHHHHHHHHHhhh
Confidence            9999999999999999999999999954432 68999999999999999999333  24899999999999999999999


Q ss_pred             hhhhhhhHHHHHHHHHHHHHhhccchhhhhhhhHHHHHHHhhchhhhHHHHHHHHhcCHHHHHHHHHHHHhCCCCCHHHH
Q 017811          191 ALFKEEKLEEAMQQYEMAIAYMGDDFMFQLFGKYRDMALAVKNPCHLNMAACLLKLKRYEEAIGQCSLVLGEDENNVKAL  270 (365)
Q Consensus       191 ~~~~~~~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~kl~~~~~A~~~~~~aL~~~p~n~ka~  270 (365)
                      .+|+.|+|..|+..|.+|+..++....++  .++......++..||+|+|.||+|+++|.+|+..|++||+++|+|+||+
T Consensus       217 ~~fK~gk~~~A~~~Yerav~~l~~~~~~~--~ee~~~~~~~k~~~~lNlA~c~lKl~~~~~Ai~~c~kvLe~~~~N~KAL  294 (397)
T KOG0543|consen  217 VLFKEGKFKLAKKRYERAVSFLEYRRSFD--EEEQKKAEALKLACHLNLAACYLKLKEYKEAIESCNKVLELDPNNVKAL  294 (397)
T ss_pred             HHHhhchHHHHHHHHHHHHHHhhccccCC--HHHHHHHHHHHHHHhhHHHHHHHhhhhHHHHHHHHHHHHhcCCCchhHH
Confidence            99999999999999999999998765543  4667788899999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCCCcccc---chhHHHHHH
Q 017811          271 FRRGKARAELGQTDAAREDFLKAGKFAPEDKSIARELRLLAEHEKAVYKKQKEIYKGIFGPRPEPKQK---KNWLIIFWQ  347 (365)
Q Consensus       271 ~~~g~a~~~l~~~~~A~~~l~~al~l~P~n~~~~~~l~~l~~~~~~~~~~~k~~y~kmf~~~~~~~~~---~~~~~~~~~  347 (365)
                      ||+|+|++.+++|+.|+.+|++|++++|+|++++.+|..|.++.++++.++|++|.+||.......++   ..++...|.
T Consensus       295 yRrG~A~l~~~e~~~A~~df~ka~k~~P~Nka~~~el~~l~~k~~~~~~kekk~y~~mF~k~~~~~~k~~s~~~~~~~~~  374 (397)
T KOG0543|consen  295 YRRGQALLALGEYDLARDDFQKALKLEPSNKAARAELIKLKQKIREYEEKEKKMYANMFAKLAEESAKTKSEAALEDKPK  374 (397)
T ss_pred             HHHHHHHHhhccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccccccccchhcccCcc
Confidence            99999999999999999999999999999999999999999999999999999999999999866555   777778888


Q ss_pred             HHHHHHHHHHhhhcc
Q 017811          348 LLVSLVLGLFKRKRV  362 (365)
Q Consensus       348 ~~~~~~~~~~~~~~~  362 (365)
                      |..+.....+...+-
T Consensus       375 ~~~~~~~~~~~~~~~  389 (397)
T KOG0543|consen  375 EQEGLTKDKDGTARL  389 (397)
T ss_pred             chhcchhhhcchhhh
Confidence            888777766655543

>KOG0545 consensus Aryl-hydrocarbon receptor-interacting protein [Posttranslational modification, protein turnover, chaperones]

Probab=100.00  E-value=1.7e-37  Score=266.71  Aligned_cols=280  Identities=25%  Similarity=0.358  Sum_probs=236.5

Q ss_pred             CCCeEEEEEecCCCCCCC--CCCEEEEEEEEEEcCC-CeeeccCcCCCCcceeecCCCCchhhhHHHHHhcCCcCcEEEE
Q 017811           51 HEKVTKQIIKEGHGQKPS--KYSTCFLHYRAWAEST-RHKFDDTWLEQQPLEMVLGKEKKEMTGLAIGVSSMKAGEHALL  127 (365)
Q Consensus        51 ~~gv~k~v~~~G~g~~p~--~g~~v~v~y~~~~~~~-g~~fd~s~~~~~p~~f~lg~~~~~i~g~e~~l~~Mk~GE~~~~  127 (365)
                      ..||.|+|+..|.|..|.  +|+.|++||.....++ ++++|+|+..++|.++++|..|+ .+-||.+|.+|.++|++.|
T Consensus         9 ~~gv~Kril~~G~g~l~e~~dGTrv~FHfrtl~~~e~~tviDDsRk~gkPmeiiiGkkFk-L~VwE~il~tM~v~EvaqF   87 (329)
T KOG0545|consen    9 VEGVKKRILHGGTGELPEFIDGTRVIFHFRTLKCDEERTVIDDSRKVGKPMEIIIGKKFK-LEVWEIILTTMRVHEVAQF   87 (329)
T ss_pred             chhhhHhhccCCCccCccccCCceEEEEEEecccCcccccccchhhcCCCeEEeeccccc-cHHHHHHHHHHhhhhHHHh
Confidence            469999999999999764  7999999999887653 57999999999999999999864 6899999999999999999


Q ss_pred             Eeccc--------------cccCCCCCC------CCC---------------CCCCCCcEEEEEEEEeeecCccc-ccCC
Q 017811          128 HVGWE--------------LGYGKEGSF------SFP---------------NVSPMADLVYEVVLIGFDETKEG-KARS  171 (365)
Q Consensus       128 ~i~~~--------------~~yg~~g~~------~~~---------------~ip~~~~l~~~iel~~~~~~~~~-~~~~  171 (365)
                      .|.-.              .+-|.....      +..               ....-++|+|.|+|+.+..+.++ .+.|
T Consensus        88 ~~d~~~~vqYPfvsksLRdia~GK~p~e~~~H~Cg~a~m~~~~glGyedLDeL~knPqpL~FviellqVe~P~qYq~e~W  167 (329)
T KOG0545|consen   88 WCDTIHTVQYPFVSKSLRDIAQGKDPTEWHRHCCGLANMFAYHGLGYEDLDELQKNPQPLVFVIELLQVEAPSQYQRETW  167 (329)
T ss_pred             hhhhhheeechhHHHHHHHHhcCCCcchhhhhhhhhHHHHHhcCCChhhHHHHhhCCCceEeehhhhhccCchhhccccc
Confidence            88632              111211000      000               01123579999999999988775 5699


Q ss_pred             CCCHHHHHHHHHHhhhhhhhhhhhhhHHHHHHHHHHHHHhhccchhh-hhhhhHHHHHHHhhchhhhHHHHHHHHhcCHH
Q 017811          172 DMTVEERIGAADRRKMDGNALFKEEKLEEAMQQYEMAIAYMGDDFMF-QLFGKYRDMALAVKNPCHLNMAACLLKLKRYE  250 (365)
Q Consensus       172 ~~~~~e~~~~a~~~k~~G~~~~~~~~y~~A~~~y~~al~~~~~~~~~-~~~~~~~~~~~~~~~~~~~nla~~~~kl~~~~  250 (365)
                      .|+.+++++.+..++.+||.+|+.|+|.+|+..|..||..+..-..- ..-+.++..+..+...+++|.+.|++..++|.
T Consensus       168 qlsddeKmkav~~l~q~GN~lfk~~~ykEA~~~YreAi~~l~~L~lkEkP~e~eW~eLdk~~tpLllNy~QC~L~~~e~y  247 (329)
T KOG0545|consen  168 QLSDDEKMKAVPVLHQEGNRLFKLGRYKEASSKYREAIICLRNLQLKEKPGEPEWLELDKMITPLLLNYCQCLLKKEEYY  247 (329)
T ss_pred             cCCchHhhhhhHHHHHhhhhhhhhccHHHHHHHHHHHHHHHHHHHhccCCCChHHHHHHHhhhHHHHhHHHHHhhHHHHH
Confidence            99999999999999999999999999999999999999887542111 11234556677788899999999999999999


Q ss_pred             HHHHHHHHHHhCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCc-HHHHHHHHHHHHHHHHHHHHHHHHHhccc
Q 017811          251 EAIGQCSLVLGEDENNVKALFRRGKARAELGQTDAAREDFLKAGKFAPED-KSIARELRLLAEHEKAVYKKQKEIYKGIF  329 (365)
Q Consensus       251 ~A~~~~~~aL~~~p~n~ka~~~~g~a~~~l~~~~~A~~~l~~al~l~P~n-~~~~~~l~~l~~~~~~~~~~~k~~y~kmf  329 (365)
                      ++++.|..+|..+|.|+||||+||+|+....+-++|..+|.++|+++|.- ..+.++|+.+..++.+.++..|..|++||
T Consensus       248 evleh~seiL~~~~~nvKA~frRakAhaa~Wn~~eA~~D~~~vL~ldpslasvVsrElr~le~r~~ek~~edr~~~~kmf  327 (329)
T KOG0545|consen  248 EVLEHCSEILRHHPGNVKAYFRRAKAHAAVWNEAEAKADLQKVLELDPSLASVVSRELRLLENRMAEKQEEDRLRCRKMF  327 (329)
T ss_pred             HHHHHHHHHHhcCCchHHHHHHHHHHHHhhcCHHHHHHHHHHHHhcChhhHHHHHHHHHHHHHHHHHhhhHHHHHHHHhc
Confidence            99999999999999999999999999999999999999999999999985 55778999999999999999999999999


Q ss_pred             CC
Q 017811          330 GP  331 (365)
Q Consensus       330 ~~  331 (365)
                      +.
T Consensus       328 s~  329 (329)
T KOG0545|consen  328 SQ  329 (329)
T ss_pred             CC
Confidence            73

>KOG0544 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]

Probab=99.97  E-value=3.1e-30  Score=187.66  Aligned_cols=105  Identities=32%  Similarity=0.535  Sum_probs=101.2

Q ss_pred             CeEEEEEecCCCC-CCCCCCEEEEEEEEEEcCCCeeeccCcCCCCcceeecCCCCchhhhHHHHHhcCCcCcEEEEEecc
Q 017811           53 KVTKQIIKEGHGQ-KPSKYSTCFLHYRAWAESTRHKFDDTWLEQQPLEMVLGKEKKEMTGLAIGVSSMKAGEHALLHVGW  131 (365)
Q Consensus        53 gv~k~v~~~G~g~-~p~~g~~v~v~y~~~~~~~g~~fd~s~~~~~p~~f~lg~~~~~i~g~e~~l~~Mk~GE~~~~~i~~  131 (365)
                      |+.+.+|+.|+|. .|..|++|++||++.+.| |+.||||.+++.||.|.+|.| +||.|||+++.+|.+||+++++|+|
T Consensus         2 Gv~~~~i~~Gdg~tfpK~Gqtvt~hYtg~L~d-G~kfDSs~dr~kPfkf~IGkg-eVIkGwdegv~qmsvGekakLti~p   79 (108)
T KOG0544|consen    2 GVEKQVISPGDGRTFPKKGQTVTVHYTGTLQD-GKKFDSSRDRGKPFKFKIGKG-EVIKGWDEGVAQMSVGEKAKLTISP   79 (108)
T ss_pred             CceeEEeeCCCCcccCCCCCEEEEEEEeEecC-CcEeecccccCCCeeEEecCc-ceeechhhcchhccccccceeeecc
Confidence            7889999999996 999999999999999998 999999999999999999999 9999999999999999999999999


Q ss_pred             ccccCCCCCCCCCCCCCCCcEEEEEEEEee
Q 017811          132 ELGYGKEGSFSFPNVSPMADLVYEVVLIGF  161 (365)
Q Consensus       132 ~~~yg~~g~~~~~~ip~~~~l~~~iel~~~  161 (365)
                      ++|||..|.  +..||||++|+|+|||+.+
T Consensus        80 d~aYG~~G~--p~~IppNatL~FdVEll~v  107 (108)
T KOG0544|consen   80 DYAYGPRGH--PGGIPPNATLVFDVELLKV  107 (108)
T ss_pred             ccccCCCCC--CCccCCCcEEEEEEEEEec
Confidence            999999996  5789999999999999976

>COG0545 FkpA FKBP-type peptidyl-prolyl cis-trans isomerases 1 [Posttranslational modification, protein turnover, chaperones]

Probab=99.97  E-value=3.6e-30  Score=217.05  Aligned_cols=128  Identities=29%  Similarity=0.455  Sum_probs=114.6

Q ss_pred             cchhhccccccCCCCCCCCCCCCCCCCceeeeCCCeEEEEEecCCCCCCCCCCEEEEEEEEEEcCCCeeeccCcCCCCcc
Q 017811           19 SEIVTEDAAFVRGEPPQDGDGPPKVDSEVEVLHEKVTKQIIKEGHGQKPSKYSTCFLHYRAWAESTRHKFDDTWLEQQPL   98 (365)
Q Consensus        19 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gv~k~v~~~G~g~~p~~g~~v~v~y~~~~~~~g~~fd~s~~~~~p~   98 (365)
                      .....+...|+..++...         .+.++++||+|.+++.|.|..|..|++|+|||+|++.| |++||||+.+++|+
T Consensus        77 ~~~~~~~~~f~~~~~k~~---------~v~~~~sgl~y~~~~~G~G~~~~~~~~V~vhY~G~l~~-G~vFDsS~~rg~p~  146 (205)
T COG0545          77 AANAAEGKAFLEKNAKEK---------GVKTLPSGLQYKVLKAGDGAAPKKGDTVTVHYTGTLID-GTVFDSSYDRGQPA  146 (205)
T ss_pred             HHhHHhHHHHHhhhcccC---------CceECCCCcEEEEEeccCCCCCCCCCEEEEEEEEecCC-CCccccccccCCCc
Confidence            334444555666665555         38999999999999999999999999999999999998 99999999999999


Q ss_pred             eeecCCCCchhhhHHHHHhcCCcCcEEEEEeccccccCCCCCCCCCCCCCCCcEEEEEEEEee
Q 017811           99 EMVLGKEKKEMTGLAIGVSSMKAGEHALLHVGWELGYGKEGSFSFPNVSPMADLVYEVVLIGF  161 (365)
Q Consensus        99 ~f~lg~~~~~i~g~e~~l~~Mk~GE~~~~~i~~~~~yg~~g~~~~~~ip~~~~l~~~iel~~~  161 (365)
                      .|.||   +||+||+++|.+|++|++++++|||++|||..|.  +..||||++|+|+|+|+++
T Consensus       147 ~f~l~---~vI~Gw~egl~~M~vG~k~~l~IP~~laYG~~g~--~g~Ippns~LvFeVeLl~v  204 (205)
T COG0545         147 EFPLG---GVIPGWDEGLQGMKVGGKRKLTIPPELAYGERGV--PGVIPPNSTLVFEVELLDV  204 (205)
T ss_pred             eeecC---CeeehHHHHHhhCCCCceEEEEeCchhccCcCCC--CCCCCCCCeEEEEEEEEec
Confidence            99999   6999999999999999999999999999999996  3459999999999999986

>KOG0549 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]

Probab=99.92  E-value=1e-24  Score=179.91  Aligned_cols=110  Identities=26%  Similarity=0.459  Sum_probs=97.9

Q ss_pred             CCeEEEEEecC--CCCCCCCCCEEEEEEEEEEcCCCeeeccCcCCCCcceeecCCCCchhhhHHHHHhcCCcCcEEEEEe
Q 017811           52 EKVTKQIIKEG--HGQKPSKYSTCFLHYRAWAESTRHKFDDTWLEQQPLEMVLGKEKKEMTGLAIGVSSMKAGEHALLHV  129 (365)
Q Consensus        52 ~gv~k~v~~~G--~g~~p~~g~~v~v~y~~~~~~~g~~fd~s~~~~~p~~f~lg~~~~~i~g~e~~l~~Mk~GE~~~~~i  129 (365)
                      +++...+++.=  -..+...||.+.+||++.++| |+.||||+.++.|++|+||.+ +||+|||.+|.+|++||++.++|
T Consensus        68 ~~l~I~v~~~p~~C~~kak~GD~l~~HY~g~leD-Gt~fdSS~~rg~P~~f~LG~g-qVIkG~Dqgl~gMCvGEkRkl~I  145 (188)
T KOG0549|consen   68 EELQIGVLKKPEECPEKAKKGDTLHVHYTGSLED-GTKFDSSYSRGAPFTFTLGTG-QVIKGWDQGLLGMCVGEKRKLII  145 (188)
T ss_pred             CceeEEEEECCccccccccCCCEEEEEEEEEecC-CCEEeeeccCCCCEEEEeCCC-ceeccHhHHhhhhCcccceEEec
Confidence            45555565552  223667899999999999998 999999999999999999999 99999999999999999999999


Q ss_pred             ccccccCCCCCCCCCCCCCCCcEEEEEEEEeeecCc
Q 017811          130 GWELGYGKEGSFSFPNVSPMADLVYEVVLIGFDETK  165 (365)
Q Consensus       130 ~~~~~yg~~g~~~~~~ip~~~~l~~~iel~~~~~~~  165 (365)
                      ||+++||+.|.  ++.||++++|+|+|||+.+....
T Consensus       146 Pp~LgYG~~G~--~~~IP~~A~LiFdiELv~i~~~~  179 (188)
T KOG0549|consen  146 PPHLGYGERGA--PPKIPGDAVLIFDIELVKIERGP  179 (188)
T ss_pred             CccccCccCCC--CCCCCCCeeEEEEEEEEEeecCC
Confidence            99999999998  46799999999999999998764

>PRK11570 peptidyl-prolyl cis-trans isomerase; Provisional

Probab=99.92  E-value=9.3e-25  Score=190.61  Aligned_cols=124  Identities=22%  Similarity=0.409  Sum_probs=112.9

Q ss_pred             hccccccCCCCCCCCCCCCCCCCceeeeCCCeEEEEEecCCCCCCCCCCEEEEEEEEEEcCCCeeeccCcCCCCcceeec
Q 017811           23 TEDAAFVRGEPPQDGDGPPKVDSEVEVLHEKVTKQIIKEGHGQKPSKYSTCFLHYRAWAESTRHKFDDTWLEQQPLEMVL  102 (365)
Q Consensus        23 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gv~k~v~~~G~g~~p~~g~~v~v~y~~~~~~~g~~fd~s~~~~~p~~f~l  102 (365)
                      ..+..|++.+....         .+.++++|++++|+++|+|..|..||.|+|||++++.+ |++||+|+.++.|++|.+
T Consensus        82 ~~~~~fl~~~~k~~---------gv~~t~sGl~y~vi~~G~G~~p~~~d~V~v~Y~g~l~d-G~vfdss~~~g~P~~f~l  151 (206)
T PRK11570         82 AEGVKFLEENAKKE---------GVNSTESGLQFRVLTQGEGAIPARTDRVRVHYTGKLID-GTVFDSSVARGEPAEFPV  151 (206)
T ss_pred             HHHHHHHHHhhhcC---------CcEECCCCcEEEEEeCCCCCCCCCCCEEEEEEEEEECC-CCEEEeccCCCCCeEEEe
Confidence            34556766666655         48899999999999999999999999999999999987 999999998889999999


Q ss_pred             CCCCchhhhHHHHHhcCCcCcEEEEEeccccccCCCCCCCCCCCCCCCcEEEEEEEEee
Q 017811          103 GKEKKEMTGLAIGVSSMKAGEHALLHVGWELGYGKEGSFSFPNVSPMADLVYEVVLIGF  161 (365)
Q Consensus       103 g~~~~~i~g~e~~l~~Mk~GE~~~~~i~~~~~yg~~g~~~~~~ip~~~~l~~~iel~~~  161 (365)
                      |   ++|+||+++|.+|++|+++.|.|||+++||+.|.  .+.|||+++|+|+|+|+++
T Consensus       152 ~---~vipG~~eaL~~M~~G~k~~~~IP~~lAYG~~g~--~~~Ipp~s~Lif~veLl~i  205 (206)
T PRK11570        152 N---GVIPGWIEALTLMPVGSKWELTIPHELAYGERGA--GASIPPFSTLVFEVELLEI  205 (206)
T ss_pred             e---chhhHHHHHHcCCCCCCEEEEEECHHHcCCCCCC--CCCcCCCCeEEEEEEEEEE
Confidence            7   6899999999999999999999999999999987  4689999999999999987

>KOG0552 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]

Probab=99.90  E-value=3.8e-23  Score=179.02  Aligned_cols=109  Identities=27%  Similarity=0.484  Sum_probs=102.7

Q ss_pred             eeeCCCeEEEEEecCCCCCCCCCCEEEEEEEEEEcCCCeeeccCcCCCCcce-eecCCCCchhhhHHHHHhcCCcCcEEE
Q 017811           48 EVLHEKVTKQIIKEGHGQKPSKYSTCFLHYRAWAESTRHKFDDTWLEQQPLE-MVLGKEKKEMTGLAIGVSSMKAGEHAL  126 (365)
Q Consensus        48 ~~~~~gv~k~v~~~G~g~~p~~g~~v~v~y~~~~~~~g~~fd~s~~~~~p~~-f~lg~~~~~i~g~e~~l~~Mk~GE~~~  126 (365)
                      .++.+||++..++.|+|+.|..|+.|.|||.|++..+|++||+++. +.|+. |++|.+ +||+||+.+|.+|++|.+++
T Consensus       116 ~tl~~Gl~y~D~~vG~G~~a~~G~rV~v~Y~Gkl~~~GkvFd~~~~-~kp~~~f~lg~g-~VIkG~d~gv~GMkvGGkRr  193 (226)
T KOG0552|consen  116 RTLPGGLRYEDLRVGSGPSAKKGKRVSVRYIGKLKGNGKVFDSNFG-GKPFKLFRLGSG-EVIKGWDVGVEGMKVGGKRR  193 (226)
T ss_pred             eecCCCcEEEEEEecCCCCCCCCCEEEEEEEEEecCCCeEeecccC-CCCccccccCCC-CCCchHHHhhhhhccCCeeE
Confidence            5789999999999999999999999999999999955999999964 57888 999999 99999999999999999999


Q ss_pred             EEeccccccCCCCCCCCCCCCCCCcEEEEEEEEee
Q 017811          127 LHVGWELGYGKEGSFSFPNVSPMADLVYEVVLIGF  161 (365)
Q Consensus       127 ~~i~~~~~yg~~g~~~~~~ip~~~~l~~~iel~~~  161 (365)
                      |+|||.+|||..+.   +.||||++|+|+|+|+.+
T Consensus       194 viIPp~lgYg~~g~---~~IppnstL~fdVEL~~v  225 (226)
T KOG0552|consen  194 VIIPPELGYGKKGV---PEIPPNSTLVFDVELLSV  225 (226)
T ss_pred             EEeCccccccccCc---CcCCCCCcEEEEEEEEec
Confidence            99999999999996   799999999999999976

>PRK10902 FKBP-type peptidyl-prolyl cis-trans isomerase; Provisional

Probab=99.89  E-value=1.4e-22  Score=183.30  Aligned_cols=130  Identities=23%  Similarity=0.426  Sum_probs=117.0

Q ss_pred             hhhccccccCCCCCCCCCCCCCCCCceeeeCCCeEEEEEecCCCCCCCCCCEEEEEEEEEEcCCCeeeccCcCCCCccee
Q 017811           21 IVTEDAAFVRGEPPQDGDGPPKVDSEVEVLHEKVTKQIIKEGHGQKPSKYSTCFLHYRAWAESTRHKFDDTWLEQQPLEM  100 (365)
Q Consensus        21 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gv~k~v~~~G~g~~p~~g~~v~v~y~~~~~~~g~~fd~s~~~~~p~~f  100 (365)
                      ....+.+|+..+....+         +.++++||+|+|+++|+|..|..||.|+|||++++.+ |++||+++.++.|+.|
T Consensus       124 ~~~~~~~fl~~~~k~~g---------v~~t~sGl~y~Vi~~G~G~~p~~gD~V~V~Y~g~l~d-G~vfdss~~~g~p~~f  193 (269)
T PRK10902        124 NEAKGKKYREKFAKEKG---------VKTTSTGLLYKVEKEGTGEAPKDSDTVVVNYKGTLID-GKEFDNSYTRGEPLSF  193 (269)
T ss_pred             HHHHHHHHHHHhccCCC---------cEECCCccEEEEEeCCCCCCCCCCCEEEEEEEEEeCC-CCEeeccccCCCceEE
Confidence            34456678887777764         7889999999999999999999999999999999987 9999999988899999


Q ss_pred             ecCCCCchhhhHHHHHhcCCcCcEEEEEeccccccCCCCCCCCCCCCCCCcEEEEEEEEeeecCcc
Q 017811          101 VLGKEKKEMTGLAIGVSSMKAGEHALLHVGWELGYGKEGSFSFPNVSPMADLVYEVVLIGFDETKE  166 (365)
Q Consensus       101 ~lg~~~~~i~g~e~~l~~Mk~GE~~~~~i~~~~~yg~~g~~~~~~ip~~~~l~~~iel~~~~~~~~  166 (365)
                      .++   ++|+||+++|.+|++|+++.|+||+.++||..|.   +.||||++|+|+|+|+++.....
T Consensus       194 ~l~---~vipG~~EaL~~Mk~Gek~~l~IP~~laYG~~g~---~gIppns~LvfeVeLl~V~~~~~  253 (269)
T PRK10902        194 RLD---GVIPGWTEGLKNIKKGGKIKLVIPPELAYGKAGV---PGIPANSTLVFDVELLDVKPAPK  253 (269)
T ss_pred             ecC---CcchHHHHHHhcCCCCcEEEEEECchhhCCCCCC---CCCCCCCcEEEEEEEEEeccCcc
Confidence            997   6899999999999999999999999999999885   57999999999999999976543

>TIGR03516 ppisom_GldI peptidyl-prolyl isomerase, gliding motility-associated

Probab=99.89  E-value=3.1e-22  Score=170.65  Aligned_cols=113  Identities=19%  Similarity=0.212  Sum_probs=102.1

Q ss_pred             CceeeeCCCeEEEEEec--CCCCCCCCCCEEEEEEEEEEcCCCeeeccCcCCCCcceeecCCCCchhhhHHHHHhcCCcC
Q 017811           45 SEVEVLHEKVTKQIIKE--GHGQKPSKYSTCFLHYRAWAESTRHKFDDTWLEQQPLEMVLGKEKKEMTGLAIGVSSMKAG  122 (365)
Q Consensus        45 ~~~~~~~~gv~k~v~~~--G~g~~p~~g~~v~v~y~~~~~~~g~~fd~s~~~~~p~~f~lg~~~~~i~g~e~~l~~Mk~G  122 (365)
                      ..+..+++|+.+.+++.  |+|..|..||.|++||++++.+ |++|++++. ..|+.|.+|.+ ++++||+++|.+|++|
T Consensus        62 ~~~~~t~sGl~Y~v~~~~~g~g~~p~~gd~V~v~Y~~~~~d-G~v~~ss~~-~~P~~f~vg~~-~vi~Gl~e~L~~Mk~G  138 (177)
T TIGR03516        62 VKYETSQNGFWYYYNQKDTGEGTTPEFGDLVTFEYDIRALD-GDVIYSEEE-LGPQTYKVDQQ-DLFSGLRDGLKLMKEG  138 (177)
T ss_pred             CCceECCCccEEEEEEecCCCCCcCCCCCEEEEEEEEEeCC-CCEEEeCCC-CCCEEEEeCCc-chhHHHHHHHcCCCCC
Confidence            34677889999999876  6666999999999999999998 899999876 45999999998 8999999999999999


Q ss_pred             cEEEEEeccccccCCCCCCCCCCCCCCCcEEEEEEEEeee
Q 017811          123 EHALLHVGWELGYGKEGSFSFPNVSPMADLVYEVVLIGFD  162 (365)
Q Consensus       123 E~~~~~i~~~~~yg~~g~~~~~~ip~~~~l~~~iel~~~~  162 (365)
                      |+++|.|||.+|||..|.  ...||||++|+|+|+|+++.
T Consensus       139 e~~~~~iP~~~AYG~~g~--~~~Ippns~L~f~IeL~~i~  176 (177)
T TIGR03516       139 ETATFLFPSHKAYGYYGD--QNKIGPNLPIISTVTLLNIK  176 (177)
T ss_pred             CEEEEEECHHHcCCCCCC--CCCcCcCCcEEEEEEEEEec
Confidence            999999999999999986  36799999999999999885

Members of this protein family are exclusive to the Bacteroidetes phylum (previously Cytophaga-Flavobacteria-Bacteroides). GldI is a FKBP-type peptidyl-prolyl cis-trans isomerase (pfam00254) linked to a type of rapid surface gliding motility found in certain Bacteroidetes, such as Flavobacterium johnsoniae and Cytophaga hutchinsonii. Knockout of this gene abolishes the gliding phenotype. Gliding motility appears closely linked to chitin utilization in the model species Flavobacterium johnsoniae. This family is only found in Bacteroidetes containing the suite of genes proposed to confer the gliding motility phenotype.

>KOG0553 consensus TPR repeat-containing protein [General function prediction only]

Probab=99.87  E-value=9.7e-22  Score=175.28  Aligned_cols=128  Identities=30%  Similarity=0.393  Sum_probs=119.2

Q ss_pred             CHHHHHHHHHHhhhhhhhhhhhhhHHHHHHHHHHHHHhhccchhhhhhhhHHHHHHHhhchhhhHHHHHHHHhcCHHHHH
Q 017811          174 TVEERIGAADRRKMDGNALFKEEKLEEAMQQYEMAIAYMGDDFMFQLFGKYRDMALAVKNPCHLNMAACLLKLKRYEEAI  253 (365)
Q Consensus       174 ~~~e~~~~a~~~k~~G~~~~~~~~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~kl~~~~~A~  253 (365)
                      +..+....|+.+|.+||.+++.++|.+|+..|.+||.++|.+.-+                 |+|+|.+|.++|+|+.|+
T Consensus        73 ~~~e~~~~AE~LK~eGN~~m~~~~Y~eAv~kY~~AI~l~P~nAVy-----------------ycNRAAAy~~Lg~~~~AV  135 (304)
T KOG0553|consen   73 TPEEDKALAESLKNEGNKLMKNKDYQEAVDKYTEAIELDPTNAVY-----------------YCNRAAAYSKLGEYEDAV  135 (304)
T ss_pred             ChHhHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCCcchH-----------------HHHHHHHHHHhcchHHHH
Confidence            333678899999999999999999999999999999999998665                 999999999999999999


Q ss_pred             HHHHHHHhCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHHHHHH
Q 017811          254 GQCSLVLGEDENNVKALFRRGKARAELGQTDAAREDFLKAGKFAPEDKSIARELRLLAEHEKAVY  318 (365)
Q Consensus       254 ~~~~~aL~~~p~n~ka~~~~g~a~~~l~~~~~A~~~l~~al~l~P~n~~~~~~l~~l~~~~~~~~  318 (365)
                      .+|..+|.+||.+.|+|-|+|.||..+|+|++|+..|++||+++|+|......|+.+...+++..
T Consensus       136 kDce~Al~iDp~yskay~RLG~A~~~~gk~~~A~~aykKaLeldP~Ne~~K~nL~~Ae~~l~e~~  200 (304)
T KOG0553|consen  136 KDCESALSIDPHYSKAYGRLGLAYLALGKYEEAIEAYKKALELDPDNESYKSNLKIAEQKLNEPK  200 (304)
T ss_pred             HHHHHHHhcChHHHHHHHHHHHHHHccCcHHHHHHHHHhhhccCCCcHHHHHHHHHHHHHhcCCC
Confidence            99999999999999999999999999999999999999999999999999999998876665543

>KOG4234 consensus TPR repeat-containing protein [General function prediction only]

Probab=99.85  E-value=2.8e-20  Score=156.37  Aligned_cols=135  Identities=30%  Similarity=0.360  Sum_probs=124.2

Q ss_pred             HHHHHHHHhhhhhhhhhhhhhHHHHHHHHHHHHHhhccchhhhhhhhHHHHHHHhhchhhhHHHHHHHHhcCHHHHHHHH
Q 017811          177 ERIGAADRRKMDGNALFKEEKLEEAMQQYEMAIAYMGDDFMFQLFGKYRDMALAVKNPCHLNMAACLLKLKRYEEAIGQC  256 (365)
Q Consensus       177 e~~~~a~~~k~~G~~~~~~~~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~kl~~~~~A~~~~  256 (365)
                      ..+..+..+|..||.+|+.|+|.+|...|..||.+.|...            ..+++-||.|+|.|+++++.|+.||.+|
T Consensus        90 k~~~kad~lK~EGN~~F~ngdyeeA~skY~~Ale~cp~~~------------~e~rsIly~Nraaa~iKl~k~e~aI~dc  157 (271)
T KOG4234|consen   90 KAIEKADSLKKEGNELFKNGDYEEANSKYQEALESCPSTS------------TEERSILYSNRAAALIKLRKWESAIEDC  157 (271)
T ss_pred             HHHHHHHHHHHHHHHhhhcccHHHHHHHHHHHHHhCcccc------------HHHHHHHHhhhHHHHHHhhhHHHHHHHH
Confidence            4578899999999999999999999999999999999753            2456778999999999999999999999


Q ss_pred             HHHHhCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHHHHHHHHHHH
Q 017811          257 SLVLGEDENNVKALFRRGKARAELGQTDAAREDFLKAGKFAPEDKSIARELRLLAEHEKAVYKKQKE  323 (365)
Q Consensus       257 ~~aL~~~p~n~ka~~~~g~a~~~l~~~~~A~~~l~~al~l~P~n~~~~~~l~~l~~~~~~~~~~~k~  323 (365)
                      .++|+++|.+.||+.|||.+|..+..|++|+.+|++.++++|.+..++..+.++.....+.+++.|.
T Consensus       158 sKaiel~pty~kAl~RRAeayek~ek~eealeDyKki~E~dPs~~ear~~i~rl~~~i~ernEkmKe  224 (271)
T KOG4234|consen  158 SKAIELNPTYEKALERRAEAYEKMEKYEEALEDYKKILESDPSRREAREAIARLPPKINERNEKMKE  224 (271)
T ss_pred             HhhHhcCchhHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhCcchHHHHHHHHhcCHHHHHHHHHHHH
Confidence            9999999999999999999999999999999999999999999999999999988877777766654

>PF00254 FKBP_C: FKBP-type peptidyl-prolyl cis-trans isomerase; InterPro: IPR001179 Synonym(s): Peptidylprolyl cis-trans isomerase FKBP-type peptidylprolyl isomerases (5

Probab=99.82  E-value=8.7e-20  Score=140.64  Aligned_cols=91  Identities=33%  Similarity=0.557  Sum_probs=84.7

Q ss_pred             CCCCCCEEEEEEEEEEcCCCeeeccCcCCCCcceeecCCCCchhhhHHHHHhcCCcCcEEEEEeccccccCCCCCCCCCC
Q 017811           66 KPSKYSTCFLHYRAWAESTRHKFDDTWLEQQPLEMVLGKEKKEMTGLAIGVSSMKAGEHALLHVGWELGYGKEGSFSFPN  145 (365)
Q Consensus        66 ~p~~g~~v~v~y~~~~~~~g~~fd~s~~~~~p~~f~lg~~~~~i~g~e~~l~~Mk~GE~~~~~i~~~~~yg~~g~~~~~~  145 (365)
                      .|+.||.|+|||++++.+ |++|++++....|++|.+|.+ ++|+||+.+|.+|++||++.|.||+.++||+.+.. ...
T Consensus         4 ~~~~gd~V~i~y~~~~~~-g~~~~~~~~~~~~~~~~~g~~-~~i~g~e~al~~m~~Ge~~~~~vp~~~ayg~~~~~-~~~   80 (94)
T PF00254_consen    4 TPKEGDTVTIHYTGRLED-GKVFDSSYQEGEPFEFRLGSG-QVIPGLEEALIGMKVGEKREFYVPPELAYGEKGLE-PPK   80 (94)
T ss_dssp             SBSTTSEEEEEEEEEETT-SEEEEETTTTTSEEEEETTSS-SSSHHHHHHHTTSBTTEEEEEEEEGGGTTTTTTBC-TTT
T ss_pred             cCCCCCEEEEEEEEEECC-CcEEEEeeecCcceeeeeccC-ccccchhhhcccccCCCEeeeEeCChhhcCccccC-CCC
Confidence            589999999999999985 999999988889999999999 89999999999999999999999999999998863 245


Q ss_pred             CCCCCcEEEEEEEE
Q 017811          146 VSPMADLVYEVVLI  159 (365)
Q Consensus       146 ip~~~~l~~~iel~  159 (365)
                      ||++++|+|+|+|+
T Consensus        81 ip~~~~l~f~Iell   94 (94)
T PF00254_consen   81 IPPNSTLVFEIELL   94 (94)
T ss_dssp             BTTTSEEEEEEEEE
T ss_pred             cCCCCeEEEEEEEC
Confidence            99999999999986

2.1.8 from EC) in vertebrates, are receptors for the two immunosuppressants, FK506 and rapamycin. The drugs inhibit T cell proliferation by arresting two distinct cytoplasmic signal transmission pathways. Peptidylprolyl isomerases accelerate protein folding by catalysing the cis-trans isomerisation of proline imidic peptide bonds in oligopeptides. These proteins are found in a variety of organisms.; GO: 0006457 protein folding; PDB: 1IX5_A 3JXV_A 3JYM_A 1T11_A 1PBK_A 1FD9_A 2VCD_A 3B7X_A 1Q6H_B 1Q6I_B ....

>KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]

Probab=99.77  E-value=2.9e-17  Score=152.43  Aligned_cols=260  Identities=18%  Similarity=0.209  Sum_probs=174.6

Q ss_pred             ecCCCC-CCCCCCEEEEEEEEEEcCCCeeeccCcCCCCcceeecCCCCchhhhHHHHHhcCCcCcEEEEEeccccccCCC
Q 017811           60 KEGHGQ-KPSKYSTCFLHYRAWAESTRHKFDDTWLEQQPLEMVLGKEKKEMTGLAIGVSSMKAGEHALLHVGWELGYGKE  138 (365)
Q Consensus        60 ~~G~g~-~p~~g~~v~v~y~~~~~~~g~~fd~s~~~~~p~~f~lg~~~~~i~g~e~~l~~Mk~GE~~~~~i~~~~~yg~~  138 (365)
                      ++|.|+ .|..|+.|.+||++++.+ |+.||||.+ +.|+.|.+|.| ++|.||+.++.+|+.              |+.
T Consensus         1 ~eg~g~~~p~~g~~v~~hytg~l~d-gt~fdss~d-~~~~~~~lg~g-~vi~~~~~gv~tm~~--------------g~~   63 (397)
T KOG0543|consen    1 KEGTGTETPMTGDKVEVHYTGTLLD-GTKFDSSRD-GDPFKFDLGKG-SVIKGWDLGVATMKK--------------GEA   63 (397)
T ss_pred             CCCCCccCCCCCceeEEEEeEEecC-CeecccccC-CCceeeecCCC-ccccccccccccccc--------------ccc
Confidence            478998 999999999999999998 999999988 89999999999 999999999999998              555


Q ss_pred             CCCCCCCCCCCCcEEEEEEEE------eeecCcccc--cCCCCC-HHH----HHHHHHHhhhhhhhhhhhhhHHHHHHHH
Q 017811          139 GSFSFPNVSPMADLVYEVVLI------GFDETKEGK--ARSDMT-VEE----RIGAADRRKMDGNALFKEEKLEEAMQQY  205 (365)
Q Consensus       139 g~~~~~~ip~~~~l~~~iel~------~~~~~~~~~--~~~~~~-~~e----~~~~a~~~k~~G~~~~~~~~y~~A~~~y  205 (365)
                      +.  +|.||++++|.|+++|+      .+.....++  .+..-. ..-    .+..-......=+..|..|+=..-+.-.
T Consensus        64 ~~--pp~ip~~a~l~fe~el~Dg~iiKriir~G~gd~~~P~~g~~V~v~~~G~~~~~~f~~~~~~fe~~~Ge~~~vi~Gl  141 (397)
T KOG0543|consen   64 GS--PPKIPSNATLLFEVELLDGGIIKRIIREGEGDYSRPNKGAVVKVHLEGELEDGVFDQRELRFEFGEGEDIDVIEGL  141 (397)
T ss_pred             CC--CCCCCCCcceeeeecccCCceEEeeeecCCCCCCCCCCCcEEEEEEEEEECCcceeccccceEEecCCccchhHHH
Confidence            55  68899999999999974      222221110  000000 000    0000000000001122333311222223


Q ss_pred             HHHHHhh----------ccchhhhh--------------------------hhhHHHHHHH---hhchhhhHHHHHHHHh
Q 017811          206 EMAIAYM----------GDDFMFQL--------------------------FGKYRDMALA---VKNPCHLNMAACLLKL  246 (365)
Q Consensus       206 ~~al~~~----------~~~~~~~~--------------------------~~~~~~~~~~---~~~~~~~nla~~~~kl  246 (365)
                      ..|+...          +..+.|+.                          ..........   -.+...--.|..|++.
T Consensus       142 e~al~~M~~GE~a~v~i~~~YayG~~~~~~p~IPPnA~l~yEVeL~~f~~~~~~s~~~~~~e~l~~A~~~ke~Gn~~fK~  221 (397)
T KOG0543|consen  142 EIALRMMKVGEVALVTIDPKYAYGEEGGEPPLIPPNATLLYEVELLDFELKEDESWKMFAEERLEAADRKKERGNVLFKE  221 (397)
T ss_pred             HHHHHhcCccceEEEEeCcccccCCCCCCCCCCCCCceEEEEEEEEeeecCcccccccchHHHHHHHHHHHHhhhHHHhh
Confidence            3333222          11111110                          0000011111   1122355678899999


Q ss_pred             cCHHHHHHHHHHHHhCCC----C-----------CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHH
Q 017811          247 KRYEEAIGQCSLVLGEDE----N-----------NVKALFRRGKARAELGQTDAAREDFLKAGKFAPEDKSIARELRLLA  311 (365)
Q Consensus       247 ~~~~~A~~~~~~aL~~~p----~-----------n~ka~~~~g~a~~~l~~~~~A~~~l~~al~l~P~n~~~~~~l~~l~  311 (365)
                      |+|..|..-|++|+..=.    .           -..++.+++.||+.+++|.+|+....++|.++|+|.-+....+.+.
T Consensus       222 gk~~~A~~~Yerav~~l~~~~~~~~ee~~~~~~~k~~~~lNlA~c~lKl~~~~~Ai~~c~kvLe~~~~N~KALyRrG~A~  301 (397)
T KOG0543|consen  222 GKFKLAKKRYERAVSFLEYRRSFDEEEQKKAEALKLACHLNLAACYLKLKEYKEAIESCNKVLELDPNNVKALYRRGQAL  301 (397)
T ss_pred             chHHHHHHHHHHHHHHhhccccCCHHHHHHHHHHHHHHhhHHHHHHHhhhhHHHHHHHHHHHHhcCCCchhHHHHHHHHH
Confidence            999999999999875421    1           1248999999999999999999999999999999999999999998


Q ss_pred             HHHHHHHHHHHHHHhcccCCCCCccccc
Q 017811          312 EHEKAVYKKQKEIYKGIFGPRPEPKQKK  339 (365)
Q Consensus       312 ~~~~~~~~~~k~~y~kmf~~~~~~~~~~  339 (365)
                      ..+.+++.+ +..|.+++...|.+....
T Consensus       302 l~~~e~~~A-~~df~ka~k~~P~Nka~~  328 (397)
T KOG0543|consen  302 LALGEYDLA-RDDFQKALKLEPSNKAAR  328 (397)
T ss_pred             HhhccHHHH-HHHHHHHHHhCCCcHHHH
Confidence            888888755 556999999999986653

>KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]

Probab=99.76  E-value=2.7e-18  Score=158.39  Aligned_cols=157  Identities=24%  Similarity=0.250  Sum_probs=138.5

Q ss_pred             HHHHHHHHhhhhhhhhhhhhhHHHHHHHHHHHHHhhccchhhhhhhhHHHHHHHhhchhhhHHHHHHHHhcCHHHHHHHH
Q 017811          177 ERIGAADRRKMDGNALFKEEKLEEAMQQYEMAIAYMGDDFMFQLFGKYRDMALAVKNPCHLNMAACLLKLKRYEEAIGQC  256 (365)
Q Consensus       177 e~~~~a~~~k~~G~~~~~~~~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~kl~~~~~A~~~~  256 (365)
                      ...+..+.++..||..|++|+|..|.++|+.||.+.|.+..             ..+.||.|+|.+..++|+..+|+.+|
T Consensus       244 ~~~k~le~~k~~gN~~fk~G~y~~A~E~Yteal~idP~n~~-------------~naklY~nra~v~~rLgrl~eaisdc  310 (486)
T KOG0550|consen  244 MMPKKLEVKKERGNDAFKNGNYRKAYECYTEALNIDPSNKK-------------TNAKLYGNRALVNIRLGRLREAISDC  310 (486)
T ss_pred             hhHHHHHHHHhhhhhHhhccchhHHHHHHHHhhcCCccccc-------------hhHHHHHHhHhhhcccCCchhhhhhh
Confidence            45677888999999999999999999999999999998633             35778999999999999999999999


Q ss_pred             HHHHhCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCCCcc
Q 017811          257 SLVLGEDENNVKALFRRGKARAELGQTDAAREDFLKAGKFAPEDKSIARELRLLAEHEKAVYKKQKEIYKGIFGPRPEPK  336 (365)
Q Consensus       257 ~~aL~~~p~n~ka~~~~g~a~~~l~~~~~A~~~l~~al~l~P~n~~~~~~l~~l~~~~~~~~~~~k~~y~kmf~~~~~~~  336 (365)
                      +.|+.+||...|||.++|+|++.+++|++|..+|++|+++.-+ ..+++.+......+++   ..|+.|.++++.....+
T Consensus       311 ~~Al~iD~syikall~ra~c~l~le~~e~AV~d~~~a~q~~~s-~e~r~~l~~A~~aLkk---SkRkd~ykilGi~~~as  386 (486)
T KOG0550|consen  311 NEALKIDSSYIKALLRRANCHLALEKWEEAVEDYEKAMQLEKD-CEIRRTLREAQLALKK---SKRKDWYKILGISRNAS  386 (486)
T ss_pred             hhhhhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccc-cchHHHHHHHHHHHHH---hhhhhHHHHhhhhhhcc
Confidence            9999999999999999999999999999999999999999876 7788888766555554   56788999998888665


Q ss_pred             cc---chhHHHHHHHHH
Q 017811          337 QK---KNWLIIFWQLLV  350 (365)
Q Consensus       337 ~~---~~~~~~~~~~~~  350 (365)
                      ..   .+|+++.+.|..
T Consensus       387 ~~eikkayrk~AL~~Hp  403 (486)
T KOG0550|consen  387 DDEIKKAYRKLALVHHP  403 (486)
T ss_pred             cchhhhHHHHHHHHhCC
Confidence            44   899999988864

>KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.74  E-value=3.5e-17  Score=153.81  Aligned_cols=129  Identities=31%  Similarity=0.428  Sum_probs=110.4

Q ss_pred             CCCCCHHHHHHHHHHhhhhhhhhhhhhhHHHHHHHHHHHHHhhccchhhhhhhhHHHHHHHhhchhhhHHHHHHHHhcCH
Q 017811          170 RSDMTVEERIGAADRRKMDGNALFKEEKLEEAMQQYEMAIAYMGDDFMFQLFGKYRDMALAVKNPCHLNMAACLLKLKRY  249 (365)
Q Consensus       170 ~~~~~~~e~~~~a~~~k~~G~~~~~~~~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~kl~~~  249 (365)
                      .-.++.+++.+.|..+|.+||.+|+.|+|++||++|+.||.+.|+.+-|                 |.|+|.||..+|+|
T Consensus       103 ~~a~~~e~~~k~A~~lK~~GN~~f~~kkY~eAIkyY~~AI~l~p~epiF-----------------YsNraAcY~~lgd~  165 (606)
T KOG0547|consen  103 KKAMLKEERLKYAAALKTKGNKFFRNKKYDEAIKYYTQAIELCPDEPIF-----------------YSNRAACYESLGDW  165 (606)
T ss_pred             hhccChHHHHHHHHHHHhhhhhhhhcccHHHHHHHHHHHHhcCCCCchh-----------------hhhHHHHHHHHhhH
Confidence            4467788999999999999999999999999999999999999986555                 99999999999999


Q ss_pred             HHHHHHHHHHHhCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC-CcHHHHHHHHHHHHHHH
Q 017811          250 EEAIGQCSLVLGEDENNVKALFRRGKARAELGQTDAAREDFLKAGKFAP-EDKSIARELRLLAEHEK  315 (365)
Q Consensus       250 ~~A~~~~~~aL~~~p~n~ka~~~~g~a~~~l~~~~~A~~~l~~al~l~P-~n~~~~~~l~~l~~~~~  315 (365)
                      .+.+++|+++|+++|+++|||+||+.|+..+|++++|+.+..-..-++. +|..+.-.+.++...+.
T Consensus       166 ~~Vied~TkALEl~P~Y~KAl~RRA~A~E~lg~~~eal~D~tv~ci~~~F~n~s~~~~~eR~Lkk~a  232 (606)
T KOG0547|consen  166 EKVIEDCTKALELNPDYVKALLRRASAHEQLGKFDEALFDVTVLCILEGFQNASIEPMAERVLKKQA  232 (606)
T ss_pred             HHHHHHHHHHhhcCcHHHHHHHHHHHHHHhhccHHHHHHhhhHHHHhhhcccchhHHHHHHHHHHHH
Confidence            9999999999999999999999999999999999999999875444333 34444444554444333

>KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones]

Probab=99.71  E-value=7.1e-17  Score=153.57  Aligned_cols=117  Identities=30%  Similarity=0.396  Sum_probs=110.9

Q ss_pred             HHHHhhhhhhhhhhhhhHHHHHHHHHHHHHhhccchhhhhhhhHHHHHHHhhchhhhHHHHHHHHhcCHHHHHHHHHHHH
Q 017811          181 AADRRKMDGNALFKEEKLEEAMQQYEMAIAYMGDDFMFQLFGKYRDMALAVKNPCHLNMAACLLKLKRYEEAIGQCSLVL  260 (365)
Q Consensus       181 ~a~~~k~~G~~~~~~~~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~kl~~~~~A~~~~~~aL  260 (365)
                      .+...+..||.+|+.|+|..|+..|++||...|++..                 +|.|+|.||.+++++..|+.+|+.++
T Consensus       357 ~A~e~r~kGne~Fk~gdy~~Av~~YteAIkr~P~Da~-----------------lYsNRAac~~kL~~~~~aL~Da~~~i  419 (539)
T KOG0548|consen  357 KAEEEREKGNEAFKKGDYPEAVKHYTEAIKRDPEDAR-----------------LYSNRAACYLKLGEYPEALKDAKKCI  419 (539)
T ss_pred             HHHHHHHHHHHHHhccCHHHHHHHHHHHHhcCCchhH-----------------HHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence            3667788999999999999999999999999998744                 59999999999999999999999999


Q ss_pred             hCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHH
Q 017811          261 GEDENNVKALFRRGKARAELGQTDAAREDFLKAGKFAPEDKSIARELRLLAEHE  314 (365)
Q Consensus       261 ~~~p~n~ka~~~~g~a~~~l~~~~~A~~~l~~al~l~P~n~~~~~~l~~l~~~~  314 (365)
                      +++|+++++|+|.|.|+..+.+|++|+..|+++++++|++.++...+.+|...+
T Consensus       420 eL~p~~~kgy~RKg~al~~mk~ydkAleay~eale~dp~~~e~~~~~~rc~~a~  473 (539)
T KOG0548|consen  420 ELDPNFIKAYLRKGAALRAMKEYDKALEAYQEALELDPSNAEAIDGYRRCVEAQ  473 (539)
T ss_pred             hcCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHh
Confidence            999999999999999999999999999999999999999999999999997765

>KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown]

Probab=99.69  E-value=8.7e-17  Score=145.36  Aligned_cols=123  Identities=29%  Similarity=0.406  Sum_probs=113.9

Q ss_pred             CCHHHHHHHHHHhhhhhhhhhhhhhHHHHHHHHHHHHHhhccchhhhhhhhHHHHHHHhhchhhhHHHHHHHHhcCHHHH
Q 017811          173 MTVEERIGAADRRKMDGNALFKEEKLEEAMQQYEMAIAYMGDDFMFQLFGKYRDMALAVKNPCHLNMAACLLKLKRYEEA  252 (365)
Q Consensus       173 ~~~~e~~~~a~~~k~~G~~~~~~~~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~kl~~~~~A  252 (365)
                      .-.++.+..+..++++||.||++|+|++||.+|.+++...|.+...                 +.|+|.+|++++.|..|
T Consensus        88 ~I~~~LL~~~SEiKE~GN~yFKQgKy~EAIDCYs~~ia~~P~NpV~-----------------~~NRA~AYlk~K~FA~A  150 (536)
T KOG4648|consen   88 PIAQQLLKKASEIKERGNTYFKQGKYEEAIDCYSTAIAVYPHNPVY-----------------HINRALAYLKQKSFAQA  150 (536)
T ss_pred             HHHHHHHHhhHHHHHhhhhhhhccchhHHHHHhhhhhccCCCCccc-----------------hhhHHHHHHHHHHHHHH
Confidence            3356778888899999999999999999999999999999987543                 89999999999999999


Q ss_pred             HHHHHHHHhCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHH
Q 017811          253 IGQCSLVLGEDENNVKALFRRGKARAELGQTDAAREDFLKAGKFAPEDKSIARELRLLAE  312 (365)
Q Consensus       253 ~~~~~~aL~~~p~n~ka~~~~g~a~~~l~~~~~A~~~l~~al~l~P~n~~~~~~l~~l~~  312 (365)
                      ..+|+.|+.+|..++|||-|||.|...||+..+|.++++.+|.|+|++.+.++.+..+..
T Consensus       151 E~DC~~AiaLd~~Y~KAYSRR~~AR~~Lg~~~EAKkD~E~vL~LEP~~~ELkK~~a~i~S  210 (536)
T KOG4648|consen  151 EEDCEAAIALDKLYVKAYSRRMQARESLGNNMEAKKDCETVLALEPKNIELKKSLARINS  210 (536)
T ss_pred             HHhHHHHHHhhHHHHHHHHHHHHHHHHHhhHHHHHHhHHHHHhhCcccHHHHHHHHHhcc
Confidence            999999999999999999999999999999999999999999999999888888777744

>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional

Probab=99.63  E-value=4e-15  Score=142.01  Aligned_cols=118  Identities=19%  Similarity=0.262  Sum_probs=110.6

Q ss_pred             HHhhhhhhhhhhhhhHHHHHHHHHHHHHhhccchhhhhhhhHHHHHHHhhchhhhHHHHHHHHhcCHHHHHHHHHHHHhC
Q 017811          183 DRRKMDGNALFKEEKLEEAMQQYEMAIAYMGDDFMFQLFGKYRDMALAVKNPCHLNMAACLLKLKRYEEAIGQCSLVLGE  262 (365)
Q Consensus       183 ~~~k~~G~~~~~~~~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~kl~~~~~A~~~~~~aL~~  262 (365)
                      ..++.+|+.+|..++|..|+.+|.+||.+.|.+..                 +|+++|.||+++|+|++|+.+++++|.+
T Consensus         3 ~~l~~~a~~a~~~~~~~~Ai~~~~~Al~~~P~~~~-----------------a~~~~a~~~~~~g~~~eAl~~~~~Al~l   65 (356)
T PLN03088          3 KDLEDKAKEAFVDDDFALAVDLYTQAIDLDPNNAE-----------------LYADRAQANIKLGNFTEAVADANKAIEL   65 (356)
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHH-----------------HHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence            45788999999999999999999999999998744                 4999999999999999999999999999


Q ss_pred             CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHHHHH
Q 017811          263 DENNVKALFRRGKARAELGQTDAAREDFLKAGKFAPEDKSIARELRLLAEHEKAV  317 (365)
Q Consensus       263 ~p~n~ka~~~~g~a~~~l~~~~~A~~~l~~al~l~P~n~~~~~~l~~l~~~~~~~  317 (365)
                      +|.+..+|+++|.+|+.+|+|++|+..|++++.++|++..+...+..|..+++..
T Consensus        66 ~P~~~~a~~~lg~~~~~lg~~~eA~~~~~~al~l~P~~~~~~~~l~~~~~kl~~~  120 (356)
T PLN03088         66 DPSLAKAYLRKGTACMKLEEYQTAKAALEKGASLAPGDSRFTKLIKECDEKIAEE  120 (356)
T ss_pred             CcCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHhh
Confidence            9999999999999999999999999999999999999999999999997777543

>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70)

Probab=99.63  E-value=9e-15  Score=149.93  Aligned_cols=136  Identities=25%  Similarity=0.274  Sum_probs=119.4

Q ss_pred             CCCCCCCcEEEEEEEEeeecCcccccCCCCCHHHHHHHHHHhhhhhhhhhhhhhHHHHHHHHHHHHHhhccchhhhhhhh
Q 017811          144 PNVSPMADLVYEVVLIGFDETKEGKARSDMTVEERIGAADRRKMDGNALFKEEKLEEAMQQYEMAIAYMGDDFMFQLFGK  223 (365)
Q Consensus       144 ~~ip~~~~l~~~iel~~~~~~~~~~~~~~~~~~e~~~~a~~~k~~G~~~~~~~~y~~A~~~y~~al~~~~~~~~~~~~~~  223 (365)
                      +.+|++..+....++..+...    ..|.++.+++...+..++..|+.+|+.|+|.+|+..|++||.+.|+. .      
T Consensus        93 ~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~a~~~k~~G~~~~~~~~~~~Ai~~y~~al~~~p~~-~------  161 (615)
T TIGR00990        93 STAPKNAPVEPADELPEIDES----SVANLSEEERKKYAAKLKEKGNKAYRNKDFNKAIKLYSKAIECKPDP-V------  161 (615)
T ss_pred             CCCCCCCCCCccccccccchh----hcccCCHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCch-H------
Confidence            345666666666666555443    26899999999999999999999999999999999999999998852 1      


Q ss_pred             HHHHHHHhhchhhhHHHHHHHHhcCHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCcH
Q 017811          224 YRDMALAVKNPCHLNMAACLLKLKRYEEAIGQCSLVLGEDENNVKALFRRGKARAELGQTDAAREDFLKAGKFAPEDK  301 (365)
Q Consensus       224 ~~~~~~~~~~~~~~nla~~~~kl~~~~~A~~~~~~aL~~~p~n~ka~~~~g~a~~~l~~~~~A~~~l~~al~l~P~n~  301 (365)
                                 .|+|+|.||+++|+|++|+.+|+++|+++|+++++|+++|.+|..+|+|++|+.+|..++.+++.+.
T Consensus       162 -----------~~~n~a~~~~~l~~~~~Ai~~~~~al~l~p~~~~a~~~~a~a~~~lg~~~eA~~~~~~~~~~~~~~~  228 (615)
T TIGR00990       162 -----------YYSNRAACHNALGDWEKVVEDTTAALELDPDYSKALNRRANAYDGLGKYADALLDLTASCIIDGFRN  228 (615)
T ss_pred             -----------HHHHHHHHHHHhCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcc
Confidence                       3899999999999999999999999999999999999999999999999999999999988877554

>KOG0551 consensus Hsp90 co-chaperone CNS1 (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]

Probab=99.62  E-value=2.4e-15  Score=135.57  Aligned_cols=108  Identities=26%  Similarity=0.292  Sum_probs=96.7

Q ss_pred             HHHHHhhhhhhhhhhhhhHHHHHHHHHHHHHhhccchhhhhhhhHHHHHHHhhchhhhHHHHHHHHhcCHHHHHHHHHHH
Q 017811          180 GAADRRKMDGNALFKEEKLEEAMQQYEMAIAYMGDDFMFQLFGKYRDMALAVKNPCHLNMAACLLKLKRYEEAIGQCSLV  259 (365)
Q Consensus       180 ~~a~~~k~~G~~~~~~~~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~kl~~~~~A~~~~~~a  259 (365)
                      +.|..+++.||.||+.++|..|+..|+++|...-.+..             +.+.+|.|+|.|++.+|+|..|+.+|.+|
T Consensus        79 E~Aen~KeeGN~~fK~Kryk~A~~~Yt~Glk~kc~D~d-------------lnavLY~NRAAa~~~l~NyRs~l~Dcs~a  145 (390)
T KOG0551|consen   79 EQAENYKEEGNEYFKEKRYKDAVESYTEGLKKKCADPD-------------LNAVLYTNRAAAQLYLGNYRSALNDCSAA  145 (390)
T ss_pred             HHHHHHHHHhHHHHHhhhHHHHHHHHHHHHhhcCCCcc-------------HHHHHHhhHHHHHHHHHHHHHHHHHHHHH
Confidence            37999999999999999999999999999998766643             45778999999999999999999999999


Q ss_pred             HhCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCc
Q 017811          260 LGEDENNVKALFRRGKARAELGQTDAAREDFLKAGKFAPED  300 (365)
Q Consensus       260 L~~~p~n~ka~~~~g~a~~~l~~~~~A~~~l~~al~l~P~n  300 (365)
                      +.++|.+.||+||-|+|++.|.++++|..+....+.++-++
T Consensus       146 l~~~P~h~Ka~~R~Akc~~eLe~~~~a~nw~ee~~~~d~e~  186 (390)
T KOG0551|consen  146 LKLKPTHLKAYIRGAKCLLELERFAEAVNWCEEGLQIDDEA  186 (390)
T ss_pred             HhcCcchhhhhhhhhHHHHHHHHHHHHHHHHhhhhhhhHHH
Confidence            99999999999999999999999888887777666665443

>PRK15095 FKBP-type peptidyl-prolyl cis-trans isomerase; Provisional

Probab=99.60  E-value=3.6e-15  Score=124.84  Aligned_cols=72  Identities=17%  Similarity=0.248  Sum_probs=67.1

Q ss_pred             CCCCCCEEEEEEEEEEcCCCeeeccCcCCCCcceeecCCCCchhhhHHHHHhcCCcCcEEEEEeccccccCCCC
Q 017811           66 KPSKYSTCFLHYRAWAESTRHKFDDTWLEQQPLEMVLGKEKKEMTGLAIGVSSMKAGEHALLHVGWELGYGKEG  139 (365)
Q Consensus        66 ~p~~g~~v~v~y~~~~~~~g~~fd~s~~~~~p~~f~lg~~~~~i~g~e~~l~~Mk~GE~~~~~i~~~~~yg~~g  139 (365)
                      .++.|+.|++||++++.+ |++||+|+..+.|+.|.+|.+ ++++||+.+|.+|++|+++.|.|||+.|||+..
T Consensus         4 ~i~~~~~V~v~Y~~~~~d-G~v~dst~~~~~P~~f~~G~g-~vi~gle~aL~gm~~Ge~~~v~ipp~~ayG~~d   75 (156)
T PRK15095          4 SVQSNSAVLVHFTLKLDD-GSTAESTRNNGKPALFRLGDG-SLSEGLEQQLLGLKVGDKKTFSLEPEAAFGVPS   75 (156)
T ss_pred             ccCCCCEEEEEEEEEeCC-CCEEEECCCCCCCEEEEeCCC-CccHHHHHHHcCCCCCCEEEEEEChHHhcCCCC
Confidence            457899999999999987 899999987789999999999 899999999999999999999999999999763

>PRK15359 type III secretion system chaperone protein SscB; Provisional

Probab=99.59  E-value=3.4e-14  Score=118.23  Aligned_cols=113  Identities=20%  Similarity=0.226  Sum_probs=104.5

Q ss_pred             hhhhhhhhhhhhhHHHHHHHHHHHHHhhccchhhhhhhhHHHHHHHhhchhhhHHHHHHHHhcCHHHHHHHHHHHHhCCC
Q 017811          185 RKMDGNALFKEEKLEEAMQQYEMAIAYMGDDFMFQLFGKYRDMALAVKNPCHLNMAACLLKLKRYEEAIGQCSLVLGEDE  264 (365)
Q Consensus       185 ~k~~G~~~~~~~~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~kl~~~~~A~~~~~~aL~~~p  264 (365)
                      +...|..++..|+|.+|+..|.+++.+.|.+..                 ++.++|.++..+|++++|+..|.+++.++|
T Consensus        27 ~~~~g~~~~~~g~~~~A~~~~~~al~~~P~~~~-----------------a~~~lg~~~~~~g~~~~A~~~y~~Al~l~p   89 (144)
T PRK15359         27 VYASGYASWQEGDYSRAVIDFSWLVMAQPWSWR-----------------AHIALAGTWMMLKEYTTAINFYGHALMLDA   89 (144)
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHH-----------------HHHHHHHHHHHHhhHHHHHHHHHHHHhcCC
Confidence            456799999999999999999999999998755                 499999999999999999999999999999


Q ss_pred             CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHH
Q 017811          265 NNVKALFRRGKARAELGQTDAAREDFLKAGKFAPEDKSIARELRLLAEHE  314 (365)
Q Consensus       265 ~n~ka~~~~g~a~~~l~~~~~A~~~l~~al~l~P~n~~~~~~l~~l~~~~  314 (365)
                      +++.+++++|.++..+|++++|+..|.+++.+.|++......++.+...+
T Consensus        90 ~~~~a~~~lg~~l~~~g~~~eAi~~~~~Al~~~p~~~~~~~~~~~~~~~l  139 (144)
T PRK15359         90 SHPEPVYQTGVCLKMMGEPGLAREAFQTAIKMSYADASWSEIRQNAQIMV  139 (144)
T ss_pred             CCcHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHH
Confidence            99999999999999999999999999999999999999887777665443

>KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones]

Probab=99.53  E-value=4e-14  Score=135.01  Aligned_cols=113  Identities=23%  Similarity=0.248  Sum_probs=107.4

Q ss_pred             HHHhhhhhhhhhhhhhHHHHHHHHHHHHHhhccchhhhhhhhHHHHHHHhhchhhhHHHHHHHHhcCHHHHHHHHHHHHh
Q 017811          182 ADRRKMDGNALFKEEKLEEAMQQYEMAIAYMGDDFMFQLFGKYRDMALAVKNPCHLNMAACLLKLKRYEEAIGQCSLVLG  261 (365)
Q Consensus       182 a~~~k~~G~~~~~~~~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~kl~~~~~A~~~~~~aL~  261 (365)
                      +..+++.||..|..|+|+.|+.+|..||.+.|.+..                 +|.|+..||.++|+|.+|+.+..+..+
T Consensus         2 a~e~k~kgnaa~s~~d~~~ai~~~t~ai~l~p~nhv-----------------lySnrsaa~a~~~~~~~al~da~k~~~   64 (539)
T KOG0548|consen    2 AVELKEKGNAAFSSGDFETAIRLFTEAIMLSPTNHV-----------------LYSNRSAAYASLGSYEKALKDATKTRR   64 (539)
T ss_pred             hhHHHHHHHhhcccccHHHHHHHHHHHHccCCCccc-----------------hhcchHHHHHHHhhHHHHHHHHHHHHh
Confidence            456789999999999999999999999999998744                 599999999999999999999999999


Q ss_pred             CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHH
Q 017811          262 EDENNVKALFRRGKARAELGQTDAAREDFLKAGKFAPEDKSIARELRLLA  311 (365)
Q Consensus       262 ~~p~n~ka~~~~g~a~~~l~~~~~A~~~l~~al~l~P~n~~~~~~l~~l~  311 (365)
                      ++|..+|+|.|+|.++..+|+|++|+..|.+.|+.+|+|+.....|....
T Consensus        65 l~p~w~kgy~r~Gaa~~~lg~~~eA~~ay~~GL~~d~~n~~L~~gl~~a~  114 (539)
T KOG0548|consen   65 LNPDWAKGYSRKGAALFGLGDYEEAILAYSEGLEKDPSNKQLKTGLAQAY  114 (539)
T ss_pred             cCCchhhHHHHhHHHHHhcccHHHHHHHHHHHhhcCCchHHHHHhHHHhh
Confidence            99999999999999999999999999999999999999999999888776

>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD

Probab=99.48  E-value=1.2e-12  Score=107.32  Aligned_cols=116  Identities=21%  Similarity=0.285  Sum_probs=105.2

Q ss_pred             HHHHhhhhhhhhhhhhhHHHHHHHHHHHHHhhccchhhhhhhhHHHHHHHhhchhhhHHHHHHHHhcCHHHHHHHHHHHH
Q 017811          181 AADRRKMDGNALFKEEKLEEAMQQYEMAIAYMGDDFMFQLFGKYRDMALAVKNPCHLNMAACLLKLKRYEEAIGQCSLVL  260 (365)
Q Consensus       181 ~a~~~k~~G~~~~~~~~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~kl~~~~~A~~~~~~aL  260 (365)
                      .+......|..++..|+|.+|+..|++++...|.+..                 ++.++|.|+.++|++++|+..+++++
T Consensus        16 ~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~-----------------~~~~la~~~~~~~~~~~A~~~~~~~~   78 (135)
T TIGR02552        16 QLEQIYALAYNLYQQGRYDEALKLFQLLAAYDPYNSR-----------------YWLGLAACCQMLKEYEEAIDAYALAA   78 (135)
T ss_pred             hHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCCCcHH-----------------HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3456788999999999999999999999999987644                 48999999999999999999999999


Q ss_pred             hCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHH
Q 017811          261 GEDENNVKALFRRGKARAELGQTDAAREDFLKAGKFAPEDKSIARELRLLAEH  313 (365)
Q Consensus       261 ~~~p~n~ka~~~~g~a~~~l~~~~~A~~~l~~al~l~P~n~~~~~~l~~l~~~  313 (365)
                      .++|.++..++.+|.++..+|++++|+..|+++++++|++.........+...
T Consensus        79 ~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~  131 (135)
T TIGR02552        79 ALDPDDPRPYFHAAECLLALGEPESALKALDLAIEICGENPEYSELKERAEAM  131 (135)
T ss_pred             hcCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccccchHHHHHHHHHHH
Confidence            99999999999999999999999999999999999999998877666655443

ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.

>KOG4642 consensus Chaperone-dependent E3 ubiquitin protein ligase (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]

Probab=99.48  E-value=1.2e-13  Score=119.64  Aligned_cols=115  Identities=27%  Similarity=0.287  Sum_probs=102.4

Q ss_pred             HHHHHhhhhhhhhhhhhhHHHHHHHHHHHHHhhccchhhhhhhhHHHHHHHhhchhhhHHHHHHHHhcCHHHHHHHHHHH
Q 017811          180 GAADRRKMDGNALFKEEKLEEAMQQYEMAIAYMGDDFMFQLFGKYRDMALAVKNPCHLNMAACLLKLKRYEEAIGQCSLV  259 (365)
Q Consensus       180 ~~a~~~k~~G~~~~~~~~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~kl~~~~~A~~~~~~a  259 (365)
                      ..+.++++.||.+|..++|..|+.+|.+||.+.|....+                 |.|+|.||+++++|+.+..+|.++
T Consensus         8 ~~a~qlkE~gnk~f~~k~y~~ai~~y~raI~~nP~~~~Y-----------------~tnralchlk~~~~~~v~~dcrra   70 (284)
T KOG4642|consen    8 ESAEQLKEQGNKCFIPKRYDDAIDCYSRAICINPTVASY-----------------YTNRALCHLKLKHWEPVEEDCRRA   70 (284)
T ss_pred             hHHHHHHhccccccchhhhchHHHHHHHHHhcCCCcchh-----------------hhhHHHHHHHhhhhhhhhhhHHHH
Confidence            457899999999999999999999999999999987555                 899999999999999999999999


Q ss_pred             HhCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC-----CcHHHHHHHHHHH
Q 017811          260 LGEDENNVKALFRRGKARAELGQTDAAREDFLKAGKFAP-----EDKSIARELRLLA  311 (365)
Q Consensus       260 L~~~p~n~ka~~~~g~a~~~l~~~~~A~~~l~~al~l~P-----~n~~~~~~l~~l~  311 (365)
                      |+++|+.+|++|.+|.+++....|++|+..|++|+.+.-     .-.++...|..++
T Consensus        71 lql~~N~vk~h~flg~~~l~s~~~~eaI~~Lqra~sl~r~~~~~~~~di~~~L~~ak  127 (284)
T KOG4642|consen   71 LQLDPNLVKAHYFLGQWLLQSKGYDEAIKVLQRAYSLLREQPFTFGDDIPKALRDAK  127 (284)
T ss_pred             HhcChHHHHHHHHHHHHHHhhccccHHHHHHHHHHHHHhcCCCCCcchHHHHHHHHH
Confidence            999999999999999999999999999999999976632     1245666666553

>KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms]

Probab=99.47  E-value=3.3e-13  Score=122.38  Aligned_cols=163  Identities=18%  Similarity=0.210  Sum_probs=138.8

Q ss_pred             HHHHHHHHHhhhhhhhhhhhhhHHHHHHHHHHHHHhhccchhhhhhhhHHHHHHHhhchhhhHHHHHHHHhcCHHHHHHH
Q 017811          176 EERIGAADRRKMDGNALFKEEKLEEAMQQYEMAIAYMGDDFMFQLFGKYRDMALAVKNPCHLNMAACLLKLKRYEEAIGQ  255 (365)
Q Consensus       176 ~e~~~~a~~~k~~G~~~~~~~~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~kl~~~~~A~~~  255 (365)
                      -.++..+....+.+......++|.+++..+++.++..|.....             +...+--+..||-.-+++.+||..
T Consensus       263 YKklkKv~K~les~e~~ie~~~~t~cle~ge~vlk~ep~~~~i-------------r~~~~r~~c~C~~~d~~~~eAiqq  329 (504)
T KOG0624|consen  263 YKKLKKVVKSLESAEQAIEEKHWTECLEAGEKVLKNEPEETMI-------------RYNGFRVLCTCYREDEQFGEAIQQ  329 (504)
T ss_pred             HHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhcCCcccce-------------eeeeeheeeecccccCCHHHHHHH
Confidence            3456666667778888889999999999999999988874322             233455677899999999999999


Q ss_pred             HHHHHhCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCCCc
Q 017811          256 CSLVLGEDENNVKALFRRGKARAELGQTDAAREDFLKAGKFAPEDKSIARELRLLAEHEKAVYKKQKEIYKGIFGPRPEP  335 (365)
Q Consensus       256 ~~~aL~~~p~n~ka~~~~g~a~~~l~~~~~A~~~l~~al~l~P~n~~~~~~l~~l~~~~~~~~~~~k~~y~kmf~~~~~~  335 (365)
                      |+.+|.++|+++.+|..||.||+.-..|+.|+.+|++|++++|+|..++..+...++.+++   ..|+.|+|+|+..++.
T Consensus       330 C~evL~~d~~dv~~l~dRAeA~l~dE~YD~AI~dye~A~e~n~sn~~~reGle~Akrlkkq---s~kRDYYKILGVkRnA  406 (504)
T KOG0624|consen  330 CKEVLDIDPDDVQVLCDRAEAYLGDEMYDDAIHDYEKALELNESNTRAREGLERAKRLKKQ---SGKRDYYKILGVKRNA  406 (504)
T ss_pred             HHHHHhcCchHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHHH---hccchHHHHhhhcccc
Confidence            9999999999999999999999999999999999999999999999999999977555544   6788899999999988


Q ss_pred             ccc---chhHHHHHHHHHHHHH
Q 017811          336 KQK---KNWLIIFWQLLVSLVL  354 (365)
Q Consensus       336 ~~~---~~~~~~~~~~~~~~~~  354 (365)
                      ...   ++|+++...|.=-.|.
T Consensus       407 sKqEI~KAYRKlAqkWHPDNFq  428 (504)
T KOG0624|consen  407 SKQEITKAYRKLAQKWHPDNFQ  428 (504)
T ss_pred             cHHHHHHHHHHHHHhcCCcccc
Confidence            766   8999999999755443

>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional

Probab=99.46  E-value=1.5e-12  Score=107.54  Aligned_cols=103  Identities=12%  Similarity=0.098  Sum_probs=96.7

Q ss_pred             HHHHhhhhhhhhhhhhhHHHHHHHHHHHHHhhccchhhhhhhhHHHHHHHhhchhhhHHHHHHHHhcCHHHHHHHHHHHH
Q 017811          181 AADRRKMDGNALFKEEKLEEAMQQYEMAIAYMGDDFMFQLFGKYRDMALAVKNPCHLNMAACLLKLKRYEEAIGQCSLVL  260 (365)
Q Consensus       181 ~a~~~k~~G~~~~~~~~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~kl~~~~~A~~~~~~aL  260 (365)
                      ..+.+...|..++..|+|++|...|+-...++|.+..+                 ++|||.|+..+|+|.+|+..|..++
T Consensus        34 ~l~~lY~~A~~ly~~G~l~~A~~~f~~L~~~Dp~~~~y-----------------~~gLG~~~Q~~g~~~~AI~aY~~A~   96 (157)
T PRK15363         34 PLNTLYRYAMQLMEVKEFAGAARLFQLLTIYDAWSFDY-----------------WFRLGECCQAQKHWGEAIYAYGRAA   96 (157)
T ss_pred             HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHH-----------------HHHHHHHHHHHhhHHHHHHHHHHHH
Confidence            35678899999999999999999999999999998766                 9999999999999999999999999


Q ss_pred             hCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCc
Q 017811          261 GEDENNVKALFRRGKARAELGQTDAAREDFLKAGKFAPED  300 (365)
Q Consensus       261 ~~~p~n~ka~~~~g~a~~~l~~~~~A~~~l~~al~l~P~n  300 (365)
                      .++|+++.++++.|.|++.+|+.+.|.+.|+.|+...-.+
T Consensus        97 ~L~~ddp~~~~~ag~c~L~lG~~~~A~~aF~~Ai~~~~~~  136 (157)
T PRK15363         97 QIKIDAPQAPWAAAECYLACDNVCYAIKALKAVVRICGEV  136 (157)
T ss_pred             hcCCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHHhccC
Confidence            9999999999999999999999999999999999987433

>KOG0376 consensus Serine-threonine phosphatase 2A, catalytic subunit [General function prediction only]

Probab=99.44  E-value=2.1e-13  Score=129.21  Aligned_cols=120  Identities=25%  Similarity=0.315  Sum_probs=113.0

Q ss_pred             HHHHhhhhhhhhhhhhhHHHHHHHHHHHHHhhccchhhhhhhhHHHHHHHhhchhhhHHHHHHHHhcCHHHHHHHHHHHH
Q 017811          181 AADRRKMDGNALFKEEKLEEAMQQYEMAIAYMGDDFMFQLFGKYRDMALAVKNPCHLNMAACLLKLKRYEEAIGQCSLVL  260 (365)
Q Consensus       181 ~a~~~k~~G~~~~~~~~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~kl~~~~~A~~~~~~aL  260 (365)
                      .|+..+.+++.+|+.+.|+.|+..|.+||++.|++..+                 +.|+|.++++.++|..|+.++.+|+
T Consensus         3 ~a~e~k~ean~~l~~~~fd~avdlysKaI~ldpnca~~-----------------~anRa~a~lK~e~~~~Al~Da~kai   65 (476)
T KOG0376|consen    3 SAEELKNEANEALKDKVFDVAVDLYSKAIELDPNCAIY-----------------FANRALAHLKVESFGGALHDALKAI   65 (476)
T ss_pred             hhhhhhhHHhhhcccchHHHHHHHHHHHHhcCCcceee-----------------echhhhhheeechhhhHHHHHHhhh
Confidence            46778999999999999999999999999999987443                 8999999999999999999999999


Q ss_pred             hCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHHHHH
Q 017811          261 GEDENNVKALFRRGKARAELGQTDAAREDFLKAGKFAPEDKSIARELRLLAEHEKAV  317 (365)
Q Consensus       261 ~~~p~n~ka~~~~g~a~~~l~~~~~A~~~l~~al~l~P~n~~~~~~l~~l~~~~~~~  317 (365)
                      +++|.+.|+|+|+|.+.+.+++|.+|+.+|++...+.|+++.+.+.+..|.....++
T Consensus        66 e~dP~~~K~Y~rrg~a~m~l~~~~~A~~~l~~~~~l~Pnd~~~~r~~~Ec~~~vs~~  122 (476)
T KOG0376|consen   66 ELDPTYIKAYVRRGTAVMALGEFKKALLDLEKVKKLAPNDPDATRKIDECNKIVSEE  122 (476)
T ss_pred             hcCchhhheeeeccHHHHhHHHHHHHHHHHHHhhhcCcCcHHHHHHHHHHHHHHHHH
Confidence            999999999999999999999999999999999999999999999999998777663

>COG1047 SlpA FKBP-type peptidyl-prolyl cis-trans isomerases 2 [Posttranslational modification, protein turnover, chaperones]

Probab=99.42  E-value=7.1e-13  Score=110.54  Aligned_cols=71  Identities=23%  Similarity=0.265  Sum_probs=66.5

Q ss_pred             CCCCCEEEEEEEEEEcCCCeeeccCcCCCCcceeecCCCCchhhhHHHHHhcCCcCcEEEEEeccccccCCCC
Q 017811           67 PSKYSTCFLHYRAWAESTRHKFDDTWLEQQPLEMVLGKEKKEMTGLAIGVSSMKAGEHALLHVGWELGYGKEG  139 (365)
Q Consensus        67 p~~g~~v~v~y~~~~~~~g~~fd~s~~~~~p~~f~lg~~~~~i~g~e~~l~~Mk~GE~~~~~i~~~~~yg~~g  139 (365)
                      ...|+.|+++|++++.+ |++||+|.....|+.|.+|.| ++|+|||.||.+|.+|++..|.|||+.|||...
T Consensus         3 i~k~~~V~i~Y~~~~~d-g~v~Dtt~e~~~P~~~i~G~g-~li~glE~al~g~~~Ge~~~V~IpPE~AfGe~~   73 (174)
T COG1047           3 IEKGDVVSLHYTLKVED-GEVVDTTDENYGPLTFIVGAG-QLIPGLEEALLGKEVGEEFTVEIPPEDAFGEYD   73 (174)
T ss_pred             ccCCCEEEEEEEEEecC-CcEEEcccccCCCeEEEecCC-CcchhHHHHHhCCCCCceeEEEeCchHhcCCCC
Confidence            46799999999999998 999999977578999999999 999999999999999999999999999999864

>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70)

Probab=99.40  E-value=5e-12  Score=129.72  Aligned_cols=155  Identities=14%  Similarity=0.052  Sum_probs=116.6

Q ss_pred             HHHHhhhhhhhhhhhhhHHHHHHHHHHHHHhhccchhhh--------hhhhHHHHH------HH---hhchhhhHHHHHH
Q 017811          181 AADRRKMDGNALFKEEKLEEAMQQYEMAIAYMGDDFMFQ--------LFGKYRDMA------LA---VKNPCHLNMAACL  243 (365)
Q Consensus       181 ~a~~~k~~G~~~~~~~~y~~A~~~y~~al~~~~~~~~~~--------~~~~~~~~~------~~---~~~~~~~nla~~~  243 (365)
                      .+..+...|..++..|++++|+..|++++.+.|.....-        ..+...+..      ..   -...+++++|.++
T Consensus       330 ~a~a~~~lg~~~~~~g~~~eA~~~~~kal~l~P~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~lg~~~  409 (615)
T TIGR00990       330 EAIALNLRGTFKCLKGKHLEALADLSKSIELDPRVTQSYIKRASMNLELGDPDKAEEDFDKALKLNSEDPDIYYHRAQLH  409 (615)
T ss_pred             hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Confidence            445577889999999999999999999999998754210        001111111      11   1135788888888


Q ss_pred             HHhcCHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHHHHHHHHHHH
Q 017811          244 LKLKRYEEAIGQCSLVLGEDENNVKALFRRGKARAELGQTDAAREDFLKAGKFAPEDKSIARELRLLAEHEKAVYKKQKE  323 (365)
Q Consensus       244 ~kl~~~~~A~~~~~~aL~~~p~n~ka~~~~g~a~~~l~~~~~A~~~l~~al~l~P~n~~~~~~l~~l~~~~~~~~~~~k~  323 (365)
                      +.+|+|++|+.+|++++.++|++..+++.+|.++..+|++++|+..|++++.+.|++..+...++.+....++..++ ..
T Consensus       410 ~~~g~~~~A~~~~~kal~l~P~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~P~~~~~~~~lg~~~~~~g~~~~A-~~  488 (615)
T TIGR00990       410 FIKGEFAQAGKDYQKSIDLDPDFIFSHIQLGVTQYKEGSIASSMATFRRCKKNFPEAPDVYNYYGELLLDQNKFDEA-IE  488 (615)
T ss_pred             HHcCCHHHHHHHHHHHHHcCccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHccCHHHH-HH
Confidence            88888888888888888888888888888888888888888888888888888888888888888887777766544 44


Q ss_pred             HHhcccCCCCCcc
Q 017811          324 IYKGIFGPRPEPK  336 (365)
Q Consensus       324 ~y~kmf~~~~~~~  336 (365)
                      .|.+.+...|...
T Consensus       489 ~~~~Al~l~p~~~  501 (615)
T TIGR00990       489 KFDTAIELEKETK  501 (615)
T ss_pred             HHHHHHhcCCccc
Confidence            5888777766543

>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]

Probab=99.40  E-value=1.2e-12  Score=126.47  Aligned_cols=140  Identities=17%  Similarity=0.130  Sum_probs=103.2

Q ss_pred             HHHHhhhhhhhhhhhhhHHHHHHHHHHHHHhhccchhhhhhhhHHHHHHHhhchhhhHHHHHHHHhcCHHHHHHHHHHHH
Q 017811          181 AADRRKMDGNALFKEEKLEEAMQQYEMAIAYMGDDFMFQLFGKYRDMALAVKNPCHLNMAACLLKLKRYEEAIGQCSLVL  260 (365)
Q Consensus       181 ~a~~~k~~G~~~~~~~~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~kl~~~~~A~~~~~~aL  260 (365)
                      .+..+.+.||.|-..+.|++|+.+|.+|+.+.|...                 .++.|+|.+|...|..+-||..|+++|
T Consensus       251 f~dAYiNLGnV~ke~~~~d~Avs~Y~rAl~lrpn~A-----------------~a~gNla~iYyeqG~ldlAI~~Ykral  313 (966)
T KOG4626|consen  251 FLDAYINLGNVYKEARIFDRAVSCYLRALNLRPNHA-----------------VAHGNLACIYYEQGLLDLAIDTYKRAL  313 (966)
T ss_pred             chHHHhhHHHHHHHHhcchHHHHHHHHHHhcCCcch-----------------hhccceEEEEeccccHHHHHHHHHHHH
Confidence            345677888888888888888888888888887643                 347777777777777777777777777


Q ss_pred             hCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCCCcccc
Q 017811          261 GEDENNVKALFRRGKARAELGQTDAAREDFLKAGKFAPEDKSIARELRLLAEHEKAVYKKQKEIYKGIFGPRPEPKQK  338 (365)
Q Consensus       261 ~~~p~n~ka~~~~g~a~~~l~~~~~A~~~l~~al~l~P~n~~~~~~l~~l~~~~~~~~~~~k~~y~kmf~~~~~~~~~  338 (365)
                      +++|+.+.||.++|.|+..+|+..+|..+|++||.+.|+.+++...|+.++..+..-..+ ...|.+.|...|.....
T Consensus       314 ~~~P~F~~Ay~NlanALkd~G~V~ea~~cYnkaL~l~p~hadam~NLgni~~E~~~~e~A-~~ly~~al~v~p~~aaa  390 (966)
T KOG4626|consen  314 ELQPNFPDAYNNLANALKDKGSVTEAVDCYNKALRLCPNHADAMNNLGNIYREQGKIEEA-TRLYLKALEVFPEFAAA  390 (966)
T ss_pred             hcCCCchHHHhHHHHHHHhccchHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhccchHH-HHHHHHHHhhChhhhhh
Confidence            777777777777777777777777777777777777777777777777776665555443 34477777766654433

>PRK10737 FKBP-type peptidyl-prolyl cis-trans isomerase; Provisional

Probab=99.39  E-value=1.3e-12  Score=112.45  Aligned_cols=70  Identities=21%  Similarity=0.323  Sum_probs=64.7

Q ss_pred             CCCCCEEEEEEEEEEcCCCeeeccCcCCCCcceeecCCCCchhhhHHHHHhcCCcCcEEEEEeccccccCCCC
Q 017811           67 PSKYSTCFLHYRAWAESTRHKFDDTWLEQQPLEMVLGKEKKEMTGLAIGVSSMKAGEHALLHVGWELGYGKEG  139 (365)
Q Consensus        67 p~~g~~v~v~y~~~~~~~g~~fd~s~~~~~p~~f~lg~~~~~i~g~e~~l~~Mk~GE~~~~~i~~~~~yg~~g  139 (365)
                      ...++.|+|+|++++.+ |++||+|.. ..|+.|.+|.+ +++|||+.+|.+|.+|++..|+|+|+.|||+..
T Consensus         3 I~~~~vV~l~Y~l~~~d-G~v~dst~~-~~Pl~~~~G~g-~lipglE~aL~G~~~Gd~~~v~l~peeAyGe~d   72 (196)
T PRK10737          3 VAKDLVVSLAYQVRTED-GVLVDESPV-SAPLDYLHGHG-SLISGLETALEGHEVGDKFDVAVGANDAYGQYD   72 (196)
T ss_pred             cCCCCEEEEEEEEEeCC-CCEEEecCC-CCCeEEEeCCC-cchHHHHHHHcCCCCCCEEEEEEChHHhcCCCC
Confidence            46789999999999987 999999964 67999999999 999999999999999999999999999999864

>PRK11189 lipoprotein NlpI; Provisional

Probab=99.39  E-value=1e-11  Score=115.93  Aligned_cols=106  Identities=20%  Similarity=0.093  Sum_probs=99.9

Q ss_pred             HHHHHhhhhhhhhhhhhhHHHHHHHHHHHHHhhccchhhhhhhhHHHHHHHhhchhhhHHHHHHHHhcCHHHHHHHHHHH
Q 017811          180 GAADRRKMDGNALFKEEKLEEAMQQYEMAIAYMGDDFMFQLFGKYRDMALAVKNPCHLNMAACLLKLKRYEEAIGQCSLV  259 (365)
Q Consensus       180 ~~a~~~k~~G~~~~~~~~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~kl~~~~~A~~~~~~a  259 (365)
                      ..+..+..+|..+...|++.+|+..|++|+.+.|++..                 +|+++|.++..+|+|++|+..++++
T Consensus        62 ~~a~~~~~~g~~~~~~g~~~~A~~~~~~Al~l~P~~~~-----------------a~~~lg~~~~~~g~~~~A~~~~~~A  124 (296)
T PRK11189         62 ERAQLHYERGVLYDSLGLRALARNDFSQALALRPDMAD-----------------AYNYLGIYLTQAGNFDAAYEAFDSV  124 (296)
T ss_pred             hhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCHH-----------------HHHHHHHHHHHCCCHHHHHHHHHHH
Confidence            34667889999999999999999999999999998644                 4999999999999999999999999


Q ss_pred             HhCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCcHH
Q 017811          260 LGEDENNVKALFRRGKARAELGQTDAAREDFLKAGKFAPEDKS  302 (365)
Q Consensus       260 L~~~p~n~ka~~~~g~a~~~l~~~~~A~~~l~~al~l~P~n~~  302 (365)
                      ++++|++..+++++|.++...|++++|+.+|++++.++|+++.
T Consensus       125 l~l~P~~~~a~~~lg~~l~~~g~~~eA~~~~~~al~~~P~~~~  167 (296)
T PRK11189        125 LELDPTYNYAYLNRGIALYYGGRYELAQDDLLAFYQDDPNDPY  167 (296)
T ss_pred             HHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHH
Confidence            9999999999999999999999999999999999999999874

>PRK15359 type III secretion system chaperone protein SscB; Provisional

Probab=99.36  E-value=1.1e-11  Score=103.18  Aligned_cols=118  Identities=6%  Similarity=-0.080  Sum_probs=104.9

Q ss_pred             HHHHHHHHHhhccchhhhhhhhHHHHHHHhhchhhhHHHHHHHHhcCHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHcC
Q 017811          202 MQQYEMAIAYMGDDFMFQLFGKYRDMALAVKNPCHLNMAACLLKLKRYEEAIGQCSLVLGEDENNVKALFRRGKARAELG  281 (365)
Q Consensus       202 ~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~kl~~~~~A~~~~~~aL~~~p~n~ka~~~~g~a~~~l~  281 (365)
                      ...|++|+++.|.+                    +.++|.++...|++++|+.+|..++.++|.+..+++.+|.++..+|
T Consensus        13 ~~~~~~al~~~p~~--------------------~~~~g~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~g   72 (144)
T PRK15359         13 EDILKQLLSVDPET--------------------VYASGYASWQEGDYSRAVIDFSWLVMAQPWSWRAHIALAGTWMMLK   72 (144)
T ss_pred             HHHHHHHHHcCHHH--------------------HHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHh
Confidence            46788899988763                    5689999999999999999999999999999999999999999999


Q ss_pred             CHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCCCccccch
Q 017811          282 QTDAAREDFLKAGKFAPEDKSIARELRLLAEHEKAVYKKQKEIYKGIFGPRPEPKQKKN  340 (365)
Q Consensus       282 ~~~~A~~~l~~al~l~P~n~~~~~~l~~l~~~~~~~~~~~k~~y~kmf~~~~~~~~~~~  340 (365)
                      ++++|+..|.+++.++|++..+...++.+....++..++... |.+.+...|+....-.
T Consensus        73 ~~~~A~~~y~~Al~l~p~~~~a~~~lg~~l~~~g~~~eAi~~-~~~Al~~~p~~~~~~~  130 (144)
T PRK15359         73 EYTTAINFYGHALMLDASHPEPVYQTGVCLKMMGEPGLAREA-FQTAIKMSYADASWSE  130 (144)
T ss_pred             hHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHcCCHHHHHHH-HHHHHHhCCCChHHHH
Confidence            999999999999999999999999999998888877765554 8888888776655533

>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]

Probab=99.36  E-value=6.2e-12  Score=121.73  Aligned_cols=105  Identities=17%  Similarity=0.197  Sum_probs=95.0

Q ss_pred             chhhhHHHHHHHHhcCHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHH
Q 017811          233 NPCHLNMAACLLKLKRYEEAIGQCSLVLGEDENNVKALFRRGKARAELGQTDAAREDFLKAGKFAPEDKSIARELRLLAE  312 (365)
Q Consensus       233 ~~~~~nla~~~~kl~~~~~A~~~~~~aL~~~p~n~ka~~~~g~a~~~l~~~~~A~~~l~~al~l~P~n~~~~~~l~~l~~  312 (365)
                      ..+++|||.+|...|++++|+.+|+.||.++|..+.||.++|..|..+|+.+.|+.+|.+|+.++|...++...|+.+++
T Consensus       388 aaa~nNLa~i~kqqgnl~~Ai~~YkealrI~P~fAda~~NmGnt~ke~g~v~~A~q~y~rAI~~nPt~AeAhsNLasi~k  467 (966)
T KOG4626|consen  388 AAAHNNLASIYKQQGNLDDAIMCYKEALRIKPTFADALSNMGNTYKEMGDVSAAIQCYTRAIQINPTFAEAHSNLASIYK  467 (966)
T ss_pred             hhhhhhHHHHHHhcccHHHHHHHHHHHHhcCchHHHHHHhcchHHHHhhhHHHHHHHHHHHHhcCcHHHHHHhhHHHHhh
Confidence            45699999999999999999999999999999999999999999999999999999999999999999999999999987


Q ss_pred             HHHHHHHHHHHHHhcccCCCCCcccc
Q 017811          313 HEKAVYKKQKEIYKGIFGPRPEPKQK  338 (365)
Q Consensus       313 ~~~~~~~~~k~~y~kmf~~~~~~~~~  338 (365)
                      -.+.-.++... |+-.+..+|+-...
T Consensus       468 DsGni~~AI~s-Y~~aLklkPDfpdA  492 (966)
T KOG4626|consen  468 DSGNIPEAIQS-YRTALKLKPDFPDA  492 (966)
T ss_pred             ccCCcHHHHHH-HHHHHccCCCCchh
Confidence            66665555444 99999999887765

>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]

Probab=99.35  E-value=2.2e-11  Score=105.35  Aligned_cols=173  Identities=19%  Similarity=0.116  Sum_probs=111.3

Q ss_pred             HHHHHHhhhhhhhhhhhhhHHHHHHHHHHHHHhhccchhhhh--------hhhH---HHHH------HHhhchhhhHHHH
Q 017811          179 IGAADRRKMDGNALFKEEKLEEAMQQYEMAIAYMGDDFMFQL--------FGKY---RDMA------LAVKNPCHLNMAA  241 (365)
Q Consensus       179 ~~~a~~~k~~G~~~~~~~~y~~A~~~y~~al~~~~~~~~~~~--------~~~~---~~~~------~~~~~~~~~nla~  241 (365)
                      -..+......|..|+..|++..|....++||+++|..+..-.        .++.   .+..      ..-...+++|.|.
T Consensus        32 ~~aa~arlqLal~YL~~gd~~~A~~nlekAL~~DPs~~~a~~~~A~~Yq~~Ge~~~A~e~YrkAlsl~p~~GdVLNNYG~  111 (250)
T COG3063          32 NEAAKARLQLALGYLQQGDYAQAKKNLEKALEHDPSYYLAHLVRAHYYQKLGENDLADESYRKALSLAPNNGDVLNNYGA  111 (250)
T ss_pred             HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCChhhHHHHHHHHHhcCCCccchhhhhhH
Confidence            345677788899999999999999999999999988654310        0000   0000      0001234555555


Q ss_pred             HHHHhcCHHHHHHHHHHHHhC--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHHHHHHH
Q 017811          242 CLLKLKRYEEAIGQCSLVLGE--DENNVKALFRRGKARAELGQTDAAREDFLKAGKFAPEDKSIARELRLLAEHEKAVYK  319 (365)
Q Consensus       242 ~~~kl~~~~~A~~~~~~aL~~--~p~n~ka~~~~g~a~~~l~~~~~A~~~l~~al~l~P~n~~~~~~l~~l~~~~~~~~~  319 (365)
                      -+...|+|++|...|++|+..  .|.-..++-++|.|.+..|+++.|..+|+++|+++|+++....++...+-..+++- 
T Consensus       112 FLC~qg~~~eA~q~F~~Al~~P~Y~~~s~t~eN~G~Cal~~gq~~~A~~~l~raL~~dp~~~~~~l~~a~~~~~~~~y~-  190 (250)
T COG3063         112 FLCAQGRPEEAMQQFERALADPAYGEPSDTLENLGLCALKAGQFDQAEEYLKRALELDPQFPPALLELARLHYKAGDYA-  190 (250)
T ss_pred             HHHhCCChHHHHHHHHHHHhCCCCCCcchhhhhhHHHHhhcCCchhHHHHHHHHHHhCcCCChHHHHHHHHHHhcccch-
Confidence            555555555555555555541  23345577778888888888888888888888888888888877777655555543 


Q ss_pred             HHHHHHhcccCCCCCccccchhHHHHHHHHHHHH
Q 017811          320 KQKEIYKGIFGPRPEPKQKKNWLIIFWQLLVSLV  353 (365)
Q Consensus       320 ~~k~~y~kmf~~~~~~~~~~~~~~~~~~~~~~~~  353 (365)
                       ....|...+...-..+....|+++.+...+|--
T Consensus       191 -~Ar~~~~~~~~~~~~~A~sL~L~iriak~~gd~  223 (250)
T COG3063         191 -PARLYLERYQQRGGAQAESLLLGIRIAKRLGDR  223 (250)
T ss_pred             -HHHHHHHHHHhcccccHHHHHHHHHHHHHhccH
Confidence             333344444444446666889999888887743

>KOG0546 consensus HSP90 co-chaperone CPR7/Cyclophilin [Posttranslational modification, protein turnover, chaperones]

Probab=99.33  E-value=2e-12  Score=118.07  Aligned_cols=156  Identities=28%  Similarity=0.349  Sum_probs=135.9

Q ss_pred             HHHHHHHHHHhhhhhhhhhhhhhHHHHHHHHHHHHHhhccchh-hhhhhhH-HHHHHHhhchhhhHHHHHHHHhcCHHHH
Q 017811          175 VEERIGAADRRKMDGNALFKEEKLEEAMQQYEMAIAYMGDDFM-FQLFGKY-RDMALAVKNPCHLNMAACLLKLKRYEEA  252 (365)
Q Consensus       175 ~~e~~~~a~~~k~~G~~~~~~~~y~~A~~~y~~al~~~~~~~~-~~~~~~~-~~~~~~~~~~~~~nla~~~~kl~~~~~A  252 (365)
                      ....+..++..++.|+..|++++|..|...|.++++....... ......+ ......++..++.|++.|-++++.+..|
T Consensus       215 ~~~~~~~~~~~k~~~~~~~kk~~~~~a~~k~~k~~r~~~~~s~~~~~e~~~~~~~~~~~r~~~~~n~~~~~lk~~~~~~a  294 (372)
T KOG0546|consen  215 FDKALEREEKKKNIGNKEFKKQRYREALAKYRKALRYLSEQSRDREKEQENRIPPLRELRFSIRRNLAAVGLKVKGRGGA  294 (372)
T ss_pred             cchhhhhhhhhhccchhhhhhccHhHHHHHHHHHhhhhcccccccccccccccccccccccccccchHHhcccccCCCcc
Confidence            3456777888999999999999999999999999998863110 0001111 2335566778899999999999999999


Q ss_pred             HHHHHHHHhCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHHHHHHHHHHHHHhcccC
Q 017811          253 IGQCSLVLGEDENNVKALFRRGKARAELGQTDAAREDFLKAGKFAPEDKSIARELRLLAEHEKAVYKKQKEIYKGIFG  330 (365)
Q Consensus       253 ~~~~~~aL~~~p~n~ka~~~~g~a~~~l~~~~~A~~~l~~al~l~P~n~~~~~~l~~l~~~~~~~~~~~k~~y~kmf~  330 (365)
                      +..+..+++.++...+||||++++++.+.++++|+.+++.+....|++..+...+.......+++..++++.+.+||+
T Consensus       295 ~~~~~~~~~~~~s~tka~~Rr~~~~~~~~~~~~a~~~~~~a~~~~p~d~~i~~~~~~~~~~~~~~~~~~~~~~~k~~s  372 (372)
T KOG0546|consen  295 RFRTNEALRDERSKTKAHYRRGQAYKLLKNYDEALEDLKKAKQKAPNDKAIEEELENVRQKKKQYNRKQKKALSKMFS  372 (372)
T ss_pred             eeccccccccChhhCcHHHHHHhHHHhhhchhhhHHHHHHhhccCcchHHHHHHHHHhhhHHHHHHHHHHHHHHhhcC
Confidence            999999999999999999999999999999999999999999999999999999999999999999999999999984

>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional

Probab=99.33  E-value=2.9e-11  Score=106.00  Aligned_cols=112  Identities=14%  Similarity=0.125  Sum_probs=86.9

Q ss_pred             HHHHHhhhhhhhhhhhhhHHHHHHHHHHHHHhhccchhhhhhhhHHHHHHHhhchhhhHHHHHH-HHhcC--HHHHHHHH
Q 017811          180 GAADRRKMDGNALFKEEKLEEAMQQYEMAIAYMGDDFMFQLFGKYRDMALAVKNPCHLNMAACL-LKLKR--YEEAIGQC  256 (365)
Q Consensus       180 ~~a~~~k~~G~~~~~~~~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~-~kl~~--~~~A~~~~  256 (365)
                      +.+..+...|..+...|+|+.|+..|.+|+.+.|++..                 +++++|.++ ...|+  +++|+..+
T Consensus        71 ~~~~~w~~Lg~~~~~~g~~~~A~~a~~~Al~l~P~~~~-----------------~~~~lA~aL~~~~g~~~~~~A~~~l  133 (198)
T PRK10370         71 QNSEQWALLGEYYLWRNDYDNALLAYRQALQLRGENAE-----------------LYAALATVLYYQAGQHMTPQTREMI  133 (198)
T ss_pred             CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHH-----------------HHHHHHHHHHHhcCCCCcHHHHHHH
Confidence            34456777888888888888888888888888887644                 378888874 56676  48888888


Q ss_pred             HHHHhCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCcHHHHHHHH
Q 017811          257 SLVLGEDENNVKALFRRGKARAELGQTDAAREDFLKAGKFAPEDKSIARELR  308 (365)
Q Consensus       257 ~~aL~~~p~n~ka~~~~g~a~~~l~~~~~A~~~l~~al~l~P~n~~~~~~l~  308 (365)
                      +++++++|+++.+++.+|.++..+|+|++|+..++++++++|.+..-...+.
T Consensus       134 ~~al~~dP~~~~al~~LA~~~~~~g~~~~Ai~~~~~aL~l~~~~~~r~~~i~  185 (198)
T PRK10370        134 DKALALDANEVTALMLLASDAFMQADYAQAIELWQKVLDLNSPRVNRTQLVE  185 (198)
T ss_pred             HHHHHhCCCChhHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCccHHHHHH
Confidence            8888888888888888888888888888888888888888887654444443

>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF

Probab=99.29  E-value=5.5e-11  Score=94.65  Aligned_cols=112  Identities=14%  Similarity=0.178  Sum_probs=98.8

Q ss_pred             HHhhhhhhhhhhhhhHHHHHHHHHHHHHhhccchhhhhhhhHHHHHHHhhchhhhHHHHHHHHhcCHHHHHHHHHHHHhC
Q 017811          183 DRRKMDGNALFKEEKLEEAMQQYEMAIAYMGDDFMFQLFGKYRDMALAVKNPCHLNMAACLLKLKRYEEAIGQCSLVLGE  262 (365)
Q Consensus       183 ~~~k~~G~~~~~~~~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~kl~~~~~A~~~~~~aL~~  262 (365)
                      ..+...|..+++.|+|.+|+..|.+++...|++..              ...+++++|.++++.++++.|+..+..++..
T Consensus         3 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~--------------~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~   68 (119)
T TIGR02795         3 EAYYDAALLVLKAGDYADAIQAFQAFLKKYPKSTY--------------APNAHYWLGEAYYAQGKYADAAKAFLAVVKK   68 (119)
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccc--------------cHHHHHHHHHHHHhhccHHHHHHHHHHHHHH
Confidence            45678899999999999999999999998886422              1235889999999999999999999999999


Q ss_pred             CCCC---HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCcHHHHHHHH
Q 017811          263 DENN---VKALFRRGKARAELGQTDAAREDFLKAGKFAPEDKSIARELR  308 (365)
Q Consensus       263 ~p~n---~ka~~~~g~a~~~l~~~~~A~~~l~~al~l~P~n~~~~~~l~  308 (365)
                      +|++   ..+++.+|.++..++++++|+..|.+++...|++..+...+.
T Consensus        69 ~p~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~  117 (119)
T TIGR02795        69 YPKSPKAPDALLKLGMSLQELGDKEKAKATLQQVIKRYPGSSAAKLAQK  117 (119)
T ss_pred             CCCCCcccHHHHHHHHHHHHhCChHHHHHHHHHHHHHCcCChhHHHHHh
Confidence            9886   678999999999999999999999999999999987665543

Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.

>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A

Probab=99.28  E-value=8.7e-12  Score=89.87  Aligned_cols=65  Identities=34%  Similarity=0.431  Sum_probs=63.0

Q ss_pred             hhhhHHHHHHHHhcCHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHcC-CHHHHHHHHHHHHhhCC
Q 017811          234 PCHLNMAACLLKLKRYEEAIGQCSLVLGEDENNVKALFRRGKARAELG-QTDAAREDFLKAGKFAP  298 (365)
Q Consensus       234 ~~~~nla~~~~kl~~~~~A~~~~~~aL~~~p~n~ka~~~~g~a~~~l~-~~~~A~~~l~~al~l~P  298 (365)
                      .++.++|.+++.+++|++|+.+|+++|+++|+++.+++++|.++..+| ++++|+.+++++++++|
T Consensus         4 ~~~~~~g~~~~~~~~~~~A~~~~~~ai~~~p~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~l~P   69 (69)
T PF13414_consen    4 EAWYNLGQIYFQQGDYEEAIEYFEKAIELDPNNAEAYYNLGLAYMKLGKDYEEAIEDFEKALKLDP   69 (69)
T ss_dssp             HHHHHHHHHHHHTTHHHHHHHHHHHHHHHSTTHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHST
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCccHHHHHHHHHHHHHcCc
Confidence            358999999999999999999999999999999999999999999999 79999999999999998

...

>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional

Probab=99.26  E-value=9.6e-11  Score=102.69  Aligned_cols=127  Identities=13%  Similarity=0.043  Sum_probs=114.5

Q ss_pred             hhhhHHHHHHHHHHHHHhhccchhhhhhhhHHHHHHHhhchhhhHHHHHHHHhcCHHHHHHHHHHHHhCCCCCHHHHHHH
Q 017811          194 KEEKLEEAMQQYEMAIAYMGDDFMFQLFGKYRDMALAVKNPCHLNMAACLLKLKRYEEAIGQCSLVLGEDENNVKALFRR  273 (365)
Q Consensus       194 ~~~~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~kl~~~~~A~~~~~~aL~~~p~n~ka~~~~  273 (365)
                      ..++..+++..|++++...|++..                 .+.++|.+|+.+|+++.|+..|++++.++|++..+++.+
T Consensus        51 ~~~~~~~~i~~l~~~L~~~P~~~~-----------------~w~~Lg~~~~~~g~~~~A~~a~~~Al~l~P~~~~~~~~l  113 (198)
T PRK10370         51 SQQTPEAQLQALQDKIRANPQNSE-----------------QWALLGEYYLWRNDYDNALLAYRQALQLRGENAELYAAL  113 (198)
T ss_pred             CchhHHHHHHHHHHHHHHCCCCHH-----------------HHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHH
Confidence            467789999999999999999754                 499999999999999999999999999999999999999


Q ss_pred             HHHH-HHcCC--HHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCCCcccc
Q 017811          274 GKAR-AELGQ--TDAAREDFLKAGKFAPEDKSIARELRLLAEHEKAVYKKQKEIYKGIFGPRPEPKQK  338 (365)
Q Consensus       274 g~a~-~~l~~--~~~A~~~l~~al~l~P~n~~~~~~l~~l~~~~~~~~~~~k~~y~kmf~~~~~~~~~  338 (365)
                      |.++ ...|+  +++|...|.++++++|++..++..++.+....+++.++... |++++...+..+++
T Consensus       114 A~aL~~~~g~~~~~~A~~~l~~al~~dP~~~~al~~LA~~~~~~g~~~~Ai~~-~~~aL~l~~~~~~r  180 (198)
T PRK10370        114 ATVLYYQAGQHMTPQTREMIDKALALDANEVTALMLLASDAFMQADYAQAIEL-WQKVLDLNSPRVNR  180 (198)
T ss_pred             HHHHHHhcCCCCcHHHHHHHHHHHHhCCCChhHHHHHHHHHHHcCCHHHHHHH-HHHHHhhCCCCccH
Confidence            9986 67787  59999999999999999999999999998888888766655 99999888876665

>KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]

Probab=99.23  E-value=1.7e-10  Score=108.61  Aligned_cols=129  Identities=17%  Similarity=0.081  Sum_probs=114.9

Q ss_pred             hhhhhhhhhhhHHHHHHHHHHHHHhhccchhhhhhhhHHHHHHHhhchhhhHHHHHHHHhcCHHHHHHHHHHHHhCCCCC
Q 017811          187 MDGNALFKEEKLEEAMQQYEMAIAYMGDDFMFQLFGKYRDMALAVKNPCHLNMAACLLKLKRYEEAIGQCSLVLGEDENN  266 (365)
Q Consensus       187 ~~G~~~~~~~~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~kl~~~~~A~~~~~~aL~~~p~n  266 (365)
                      -.||-|--+++++.|+..|++|++++|.-                 ..++.-+|.=|+.+++-..|+..|+.|++++|.+
T Consensus       335 iIaNYYSlr~eHEKAv~YFkRALkLNp~~-----------------~~aWTLmGHEyvEmKNt~AAi~sYRrAvdi~p~D  397 (559)
T KOG1155|consen  335 IIANYYSLRSEHEKAVMYFKRALKLNPKY-----------------LSAWTLMGHEYVEMKNTHAAIESYRRAVDINPRD  397 (559)
T ss_pred             eehhHHHHHHhHHHHHHHHHHHHhcCcch-----------------hHHHHHhhHHHHHhcccHHHHHHHHHHHhcCchh
Confidence            37888889999999999999999999984                 3458889999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCC
Q 017811          267 VKALFRRGKARAELGQTDAAREDFLKAGKFAPEDKSIARELRLLAEHEKAVYKKQKEIYKGIFGPRP  333 (365)
Q Consensus       267 ~ka~~~~g~a~~~l~~~~~A~~~l~~al~l~P~n~~~~~~l~~l~~~~~~~~~~~k~~y~kmf~~~~  333 (365)
                      -+|||-+|++|.-++...-|+-+|++|+.+-|+|..++..|+.|+.++....++.+. |++......
T Consensus       398 yRAWYGLGQaYeim~Mh~YaLyYfqkA~~~kPnDsRlw~aLG~CY~kl~~~~eAiKC-ykrai~~~d  463 (559)
T KOG1155|consen  398 YRAWYGLGQAYEIMKMHFYALYYFQKALELKPNDSRLWVALGECYEKLNRLEEAIKC-YKRAILLGD  463 (559)
T ss_pred             HHHHhhhhHHHHHhcchHHHHHHHHHHHhcCCCchHHHHHHHHHHHHhccHHHHHHH-HHHHHhccc
Confidence            999999999999999999999999999999999999999999999888888777766 766654443

>KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms]

Probab=99.23  E-value=1e-10  Score=106.40  Aligned_cols=116  Identities=20%  Similarity=0.304  Sum_probs=104.4

Q ss_pred             HHHHHhhhhhhhhhhhhhHHHHHHHHHHHHHhhccchhhhhhhhHHHHHHHhhchhhhHHHHHHHHhcCHHHHHHHHHHH
Q 017811          180 GAADRRKMDGNALFKEEKLEEAMQQYEMAIAYMGDDFMFQLFGKYRDMALAVKNPCHLNMAACLLKLKRYEEAIGQCSLV  259 (365)
Q Consensus       180 ~~a~~~k~~G~~~~~~~~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~kl~~~~~A~~~~~~a  259 (365)
                      ..+..+.+.|+.++..|+|..|+..|..|++.+|+++.                 +++.+|.+|+.+|+-..|+.++.++
T Consensus        36 advekhlElGk~lla~~Q~sDALt~yHaAve~dp~~Y~-----------------aifrRaT~yLAmGksk~al~Dl~rV   98 (504)
T KOG0624|consen   36 ADVEKHLELGKELLARGQLSDALTHYHAAVEGDPNNYQ-----------------AIFRRATVYLAMGKSKAALQDLSRV   98 (504)
T ss_pred             HHHHHHHHHHHHHHHhhhHHHHHHHHHHHHcCCchhHH-----------------HHHHHHHHHhhhcCCccchhhHHHH
Confidence            45778999999999999999999999999999998755                 4899999999999999999999999


Q ss_pred             HhCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCcH---HHHHHHHHHHH
Q 017811          260 LGEDENNVKALFRRGKARAELGQTDAAREDFLKAGKFAPEDK---SIARELRLLAE  312 (365)
Q Consensus       260 L~~~p~n~ka~~~~g~a~~~l~~~~~A~~~l~~al~l~P~n~---~~~~~l~~l~~  312 (365)
                      |++.|+..-|...||.+++.+|+++.|..+|..+|..+|++.   +++..+..+.+
T Consensus        99 lelKpDF~~ARiQRg~vllK~Gele~A~~DF~~vl~~~~s~~~~~eaqskl~~~~e  154 (504)
T KOG0624|consen   99 LELKPDFMAARIQRGVVLLKQGELEQAEADFDQVLQHEPSNGLVLEAQSKLALIQE  154 (504)
T ss_pred             HhcCccHHHHHHHhchhhhhcccHHHHHHHHHHHHhcCCCcchhHHHHHHHHhHHH
Confidence            999999999999999999999999999999999999999764   44544544433

>KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning]

Probab=99.22  E-value=4.9e-11  Score=116.65  Aligned_cols=136  Identities=15%  Similarity=0.171  Sum_probs=79.8

Q ss_pred             HHHhhhhhhhhhhhhhHHHHHHHHHHHHHhhccchhhhhhhhHHHHHHHhhchhhhHHHHHHHHhcCHHHHHHHHHHHHh
Q 017811          182 ADRRKMDGNALFKEEKLEEAMQQYEMAIAYMGDDFMFQLFGKYRDMALAVKNPCHLNMAACLLKLKRYEEAIGQCSLVLG  261 (365)
Q Consensus       182 a~~~k~~G~~~~~~~~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~kl~~~~~A~~~~~~aL~  261 (365)
                      -+.|...||.+--+++++.||++|++||.++|....                 +|.-+|.=+....+|+.|..+|+.||.
T Consensus       421 PesWca~GNcfSLQkdh~~Aik~f~RAiQldp~faY-----------------ayTLlGhE~~~~ee~d~a~~~fr~Al~  483 (638)
T KOG1126|consen  421 PESWCALGNCFSLQKDHDTAIKCFKRAIQLDPRFAY-----------------AYTLLGHESIATEEFDKAMKSFRKALG  483 (638)
T ss_pred             cHHHHHhcchhhhhhHHHHHHHHHHHhhccCCccch-----------------hhhhcCChhhhhHHHHhHHHHHHhhhc
Confidence            456889999999999999999999999999996422                 244444444445555555555555555


Q ss_pred             CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCCCc
Q 017811          262 EDENNVKALFRRGKARAELGQTDAAREDFLKAGKFAPEDKSIARELRLLAEHEKAVYKKQKEIYKGIFGPRPEP  335 (365)
Q Consensus       262 ~~p~n~ka~~~~g~a~~~l~~~~~A~~~l~~al~l~P~n~~~~~~l~~l~~~~~~~~~~~k~~y~kmf~~~~~~  335 (365)
                      .+|.+-.|||-+|.+|+.+++++.|.-.|++|+.++|.|..+.-.++....++++.+++ -.+|.+.+-.++.+
T Consensus       484 ~~~rhYnAwYGlG~vy~Kqek~e~Ae~~fqkA~~INP~nsvi~~~~g~~~~~~k~~d~A-L~~~~~A~~ld~kn  556 (638)
T KOG1126|consen  484 VDPRHYNAWYGLGTVYLKQEKLEFAEFHFQKAVEINPSNSVILCHIGRIQHQLKRKDKA-LQLYEKAIHLDPKN  556 (638)
T ss_pred             CCchhhHHHHhhhhheeccchhhHHHHHHHhhhcCCccchhHHhhhhHHHHHhhhhhHH-HHHHHHHHhcCCCC
Confidence            55555555555555555555555555555555555555555555555444444433322 23344444444433

>PRK12370 invasion protein regulator; Provisional

Probab=99.20  E-value=2.5e-10  Score=115.62  Aligned_cols=120  Identities=8%  Similarity=-0.075  Sum_probs=99.4

Q ss_pred             hhhHHHHHHHHHHHHHhhccchhhhhhhhHHHHHHHhhchhhhHHHHHHHHhcCHHHHHHHHHHHHhCCCCCHHHHHHHH
Q 017811          195 EEKLEEAMQQYEMAIAYMGDDFMFQLFGKYRDMALAVKNPCHLNMAACLLKLKRYEEAIGQCSLVLGEDENNVKALFRRG  274 (365)
Q Consensus       195 ~~~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~kl~~~~~A~~~~~~aL~~~p~n~ka~~~~g  274 (365)
                      .+++.+|+..+++|+++.|.+..                 ++..+|.++...|++++|+..|+++++++|+++.+++.+|
T Consensus       317 ~~~~~~A~~~~~~Al~ldP~~~~-----------------a~~~lg~~~~~~g~~~~A~~~~~~Al~l~P~~~~a~~~lg  379 (553)
T PRK12370        317 QNAMIKAKEHAIKATELDHNNPQ-----------------ALGLLGLINTIHSEYIVGSLLFKQANLLSPISADIKYYYG  379 (553)
T ss_pred             chHHHHHHHHHHHHHhcCCCCHH-----------------HHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHH
Confidence            35589999999999999998754                 4889999999999999999999999999999999999999


Q ss_pred             HHHHHcCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCC
Q 017811          275 KARAELGQTDAAREDFLKAGKFAPEDKSIARELRLLAEHEKAVYKKQKEIYKGIFGPR  332 (365)
Q Consensus       275 ~a~~~l~~~~~A~~~l~~al~l~P~n~~~~~~l~~l~~~~~~~~~~~k~~y~kmf~~~  332 (365)
                      .++..+|++++|+..|+++++++|.+......+..+....+++ +.....+.+++...
T Consensus       380 ~~l~~~G~~~eAi~~~~~Al~l~P~~~~~~~~~~~~~~~~g~~-eeA~~~~~~~l~~~  436 (553)
T PRK12370        380 WNLFMAGQLEEALQTINECLKLDPTRAAAGITKLWITYYHTGI-DDAIRLGDELRSQH  436 (553)
T ss_pred             HHHHHCCCHHHHHHHHHHHHhcCCCChhhHHHHHHHHHhccCH-HHHHHHHHHHHHhc
Confidence            9999999999999999999999999876654444333444444 34444577776553

>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional

Probab=99.20  E-value=3.2e-10  Score=120.43  Aligned_cols=110  Identities=5%  Similarity=-0.072  Sum_probs=58.7

Q ss_pred             hhhhhhhhhhhhHHHHHHHHHHHHHhhccchhhhhhhhHHHHHHHhhchhhhHHHHHHHHhcCHHHHHHHHHHHHhCCCC
Q 017811          186 KMDGNALFKEEKLEEAMQQYEMAIAYMGDDFMFQLFGKYRDMALAVKNPCHLNMAACLLKLKRYEEAIGQCSLVLGEDEN  265 (365)
Q Consensus       186 k~~G~~~~~~~~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~kl~~~~~A~~~~~~aL~~~p~  265 (365)
                      ...|..+.+.|++++|+..|.+++.+.|++..                 +++|+|.++..+|++++|+..+.++++++|+
T Consensus       613 ~~LA~~l~~lG~~deA~~~l~~AL~l~Pd~~~-----------------a~~nLG~aL~~~G~~eeAi~~l~~AL~l~P~  675 (987)
T PRK09782        613 VARATIYRQRHNVPAAVSDLRAALELEPNNSN-----------------YQAALGYALWDSGDIAQSREMLERAHKGLPD  675 (987)
T ss_pred             HHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHH-----------------HHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC
Confidence            33444444444444444444444444444322                 2555555555555555555555555555555


Q ss_pred             CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHH
Q 017811          266 NVKALFRRGKARAELGQTDAAREDFLKAGKFAPEDKSIARELRLLAE  312 (365)
Q Consensus       266 n~ka~~~~g~a~~~l~~~~~A~~~l~~al~l~P~n~~~~~~l~~l~~  312 (365)
                      ++.+++.+|.++..+|++++|+..|++++.++|++..+......+..
T Consensus       676 ~~~a~~nLA~al~~lGd~~eA~~~l~~Al~l~P~~a~i~~~~g~~~~  722 (987)
T PRK09782        676 DPALIRQLAYVNQRLDDMAATQHYARLVIDDIDNQALITPLTPEQNQ  722 (987)
T ss_pred             CHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCchhhhhhhHHHH
Confidence            55555555555555555555555555555555555555555544433

>PRK02603 photosystem I assembly protein Ycf3; Provisional

Probab=99.18  E-value=4.2e-10  Score=96.44  Aligned_cols=110  Identities=20%  Similarity=0.162  Sum_probs=96.5

Q ss_pred             HHHHHHHHhhhhhhhhhhhhhHHHHHHHHHHHHHhhccchhhhhhhhHHHHHHHhhchhhhHHHHHHHHhcCHHHHHHHH
Q 017811          177 ERIGAADRRKMDGNALFKEEKLEEAMQQYEMAIAYMGDDFMFQLFGKYRDMALAVKNPCHLNMAACLLKLKRYEEAIGQC  256 (365)
Q Consensus       177 e~~~~a~~~k~~G~~~~~~~~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~kl~~~~~A~~~~  256 (365)
                      .....+..+...|..+...|+|++|+.+|++++...++...              ...++.++|.++.++|+|++|+..+
T Consensus        30 ~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~--------------~~~~~~~la~~~~~~g~~~~A~~~~   95 (172)
T PRK02603         30 KKAKEAFVYYRDGMSAQADGEYAEALENYEEALKLEEDPND--------------RSYILYNMGIIYASNGEHDKALEYY   95 (172)
T ss_pred             cHhhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhccch--------------HHHHHHHHHHHHHHcCCHHHHHHHH
Confidence            35567778899999999999999999999999998765321              1235899999999999999999999


Q ss_pred             HHHHhCCCCCHHHHHHHHHHHHHcCC--------------HHHHHHHHHHHHhhCCCc
Q 017811          257 SLVLGEDENNVKALFRRGKARAELGQ--------------TDAAREDFLKAGKFAPED  300 (365)
Q Consensus       257 ~~aL~~~p~n~ka~~~~g~a~~~l~~--------------~~~A~~~l~~al~l~P~n  300 (365)
                      .+++.++|.+..+++.+|.++..+|+              +++|+..+++++.++|+|
T Consensus        96 ~~al~~~p~~~~~~~~lg~~~~~~g~~~~a~~~~~~A~~~~~~A~~~~~~a~~~~p~~  153 (172)
T PRK02603         96 HQALELNPKQPSALNNIAVIYHKRGEKAEEAGDQDEAEALFDKAAEYWKQAIRLAPNN  153 (172)
T ss_pred             HHHHHhCcccHHHHHHHHHHHHHcCChHhHhhCHHHHHHHHHHHHHHHHHHHhhCchh
Confidence            99999999999999999999999998              677888888888888876

>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional

Probab=99.18  E-value=8.4e-10  Score=117.28  Aligned_cols=124  Identities=15%  Similarity=0.118  Sum_probs=107.1

Q ss_pred             hhHHHHHHHHHHHHHhhccchhhhhhhhHHHHHHHhhchhhhHHHHHHHHhcCHHHHHHHHHHHHhCCCCCHHHHHHHHH
Q 017811          196 EKLEEAMQQYEMAIAYMGDDFMFQLFGKYRDMALAVKNPCHLNMAACLLKLKRYEEAIGQCSLVLGEDENNVKALFRRGK  275 (365)
Q Consensus       196 ~~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~kl~~~~~A~~~~~~aL~~~p~n~ka~~~~g~  275 (365)
                      |++.+|+..|.+|+.+.|.                  ..++.|+|.++.++|++++|+..+.+++.++|+++.+++.+|.
T Consensus       590 Gr~~eAl~~~~~AL~l~P~------------------~~a~~~LA~~l~~lG~~deA~~~l~~AL~l~Pd~~~a~~nLG~  651 (987)
T PRK09782        590 GQPELALNDLTRSLNIAPS------------------ANAYVARATIYRQRHNVPAAVSDLRAALELEPNNSNYQAALGY  651 (987)
T ss_pred             CCHHHHHHHHHHHHHhCCC------------------HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHH
Confidence            5555555555555555553                  2358999999999999999999999999999999999999999


Q ss_pred             HHHHcCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCCCcccc
Q 017811          276 ARAELGQTDAAREDFLKAGKFAPEDKSIARELRLLAEHEKAVYKKQKEIYKGIFGPRPEPKQK  338 (365)
Q Consensus       276 a~~~l~~~~~A~~~l~~al~l~P~n~~~~~~l~~l~~~~~~~~~~~k~~y~kmf~~~~~~~~~  338 (365)
                      ++..+|++++|+..|+++++++|++..+...++.+....++..+... .|++.+...|+..+.
T Consensus       652 aL~~~G~~eeAi~~l~~AL~l~P~~~~a~~nLA~al~~lGd~~eA~~-~l~~Al~l~P~~a~i  713 (987)
T PRK09782        652 ALWDSGDIAQSREMLERAHKGLPDDPALIRQLAYVNQRLDDMAATQH-YARLVIDDIDNQALI  713 (987)
T ss_pred             HHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHH-HHHHHHhcCCCCchh
Confidence            99999999999999999999999999999999999988888776665 599999988876555

>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO

Probab=99.18  E-value=5e-10  Score=100.72  Aligned_cols=113  Identities=17%  Similarity=0.160  Sum_probs=99.7

Q ss_pred             HHHHhhhhhhhhhhhhhHHHHHHHHHHHHHhhccchhhhhhhhHHHHHHHhhchhhhHHHHHHHHhcCHHHHHHHHHHHH
Q 017811          181 AADRRKMDGNALFKEEKLEEAMQQYEMAIAYMGDDFMFQLFGKYRDMALAVKNPCHLNMAACLLKLKRYEEAIGQCSLVL  260 (365)
Q Consensus       181 ~a~~~k~~G~~~~~~~~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~kl~~~~~A~~~~~~aL  260 (365)
                      .+..+...|..++..|+|..|+..|.+++...|.+...              ..+++++|.+|+++++|++|+..+++++
T Consensus        32 ~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~p~~~~~--------------~~a~~~la~~~~~~~~~~~A~~~~~~~l   97 (235)
T TIGR03302        32 PAEELYEEAKEALDSGDYTEAIKYFEALESRYPFSPYA--------------EQAQLDLAYAYYKSGDYAEAIAAADRFI   97 (235)
T ss_pred             CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchhH--------------HHHHHHHHHHHHhcCCHHHHHHHHHHHH
Confidence            45678899999999999999999999999999875421              2358999999999999999999999999


Q ss_pred             hCCCCCHH---HHHHHHHHHHHc--------CCHHHHHHHHHHHHhhCCCcHHHHHHH
Q 017811          261 GEDENNVK---ALFRRGKARAEL--------GQTDAAREDFLKAGKFAPEDKSIAREL  307 (365)
Q Consensus       261 ~~~p~n~k---a~~~~g~a~~~l--------~~~~~A~~~l~~al~l~P~n~~~~~~l  307 (365)
                      +.+|+++.   ++|.+|.++..+        +++++|+..|++++..+|++..+...+
T Consensus        98 ~~~p~~~~~~~a~~~~g~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~a~  155 (235)
T TIGR03302        98 RLHPNHPDADYAYYLRGLSNYNQIDRVDRDQTAAREAFEAFQELIRRYPNSEYAPDAK  155 (235)
T ss_pred             HHCcCCCchHHHHHHHHHHHHHhcccccCCHHHHHHHHHHHHHHHHHCCCChhHHHHH
Confidence            99998876   799999999987        889999999999999999987655443

Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).

>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD

Probab=99.18  E-value=3.4e-10  Score=92.64  Aligned_cols=122  Identities=12%  Similarity=0.036  Sum_probs=105.3

Q ss_pred             HHHHHHHHhhccchhhhhhhhHHHHHHHhhchhhhHHHHHHHHhcCHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHcCC
Q 017811          203 QQYEMAIAYMGDDFMFQLFGKYRDMALAVKNPCHLNMAACLLKLKRYEEAIGQCSLVLGEDENNVKALFRRGKARAELGQ  282 (365)
Q Consensus       203 ~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~kl~~~~~A~~~~~~aL~~~p~n~ka~~~~g~a~~~l~~  282 (365)
                      ..|.+++...|.+..                 +++++|.+++..|++++|+..+++++.++|.+..+++++|.++..+|+
T Consensus         4 ~~~~~~l~~~p~~~~-----------------~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~~~   66 (135)
T TIGR02552         4 ATLKDLLGLDSEQLE-----------------QIYALAYNLYQQGRYDEALKLFQLLAAYDPYNSRYWLGLAACCQMLKE   66 (135)
T ss_pred             hhHHHHHcCChhhHH-----------------HHHHHHHHHHHcccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHH
Confidence            467888888887533                 388999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCCCccccchhH
Q 017811          283 TDAAREDFLKAGKFAPEDKSIARELRLLAEHEKAVYKKQKEIYKGIFGPRPEPKQKKNWL  342 (365)
Q Consensus       283 ~~~A~~~l~~al~l~P~n~~~~~~l~~l~~~~~~~~~~~k~~y~kmf~~~~~~~~~~~~~  342 (365)
                      +++|...|++++.++|.+......++.+....++..+.. +.|.+.+...|+......+.
T Consensus        67 ~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~g~~~~A~-~~~~~al~~~p~~~~~~~~~  125 (135)
T TIGR02552        67 YEEAIDAYALAAALDPDDPRPYFHAAECLLALGEPESAL-KALDLAIEICGENPEYSELK  125 (135)
T ss_pred             HHHHHHHHHHHHhcCCCChHHHHHHHHHHHHcCCHHHHH-HHHHHHHHhccccchHHHHH
Confidence            999999999999999999999999999988877765554 45888888887665544333

ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.

>KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]

Probab=99.17  E-value=7.7e-10  Score=104.30  Aligned_cols=133  Identities=14%  Similarity=0.132  Sum_probs=121.4

Q ss_pred             HHHhhhhhhhhhhhhhHHHHHHHHHHHHHhhccchhhhhhhhHHHHHHHhhchhhhHHHHHHHHhcCHHHHHHHHHHHHh
Q 017811          182 ADRRKMDGNALFKEEKLEEAMQQYEMAIAYMGDDFMFQLFGKYRDMALAVKNPCHLNMAACLLKLKRYEEAIGQCSLVLG  261 (365)
Q Consensus       182 a~~~k~~G~~~~~~~~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~kl~~~~~A~~~~~~aL~  261 (365)
                      +..|--+|.+++..++-..|+..|++|++++|.|+.                 +++.||++|--++.+-=|+-++++|++
T Consensus       364 ~~aWTLmGHEyvEmKNt~AAi~sYRrAvdi~p~DyR-----------------AWYGLGQaYeim~Mh~YaLyYfqkA~~  426 (559)
T KOG1155|consen  364 LSAWTLMGHEYVEMKNTHAAIESYRRAVDINPRDYR-----------------AWYGLGQAYEIMKMHFYALYYFQKALE  426 (559)
T ss_pred             hHHHHHhhHHHHHhcccHHHHHHHHHHHhcCchhHH-----------------HHhhhhHHHHHhcchHHHHHHHHHHHh
Confidence            345567999999999999999999999999999865                 499999999999999999999999999


Q ss_pred             CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCC
Q 017811          262 EDENNVKALFRRGKARAELGQTDAAREDFLKAGKFAPEDKSIARELRLLAEHEKAVYKKQKEIYKGIFGPR  332 (365)
Q Consensus       262 ~~p~n~ka~~~~g~a~~~l~~~~~A~~~l~~al~l~P~n~~~~~~l~~l~~~~~~~~~~~k~~y~kmf~~~  332 (365)
                      +.|++...|--+|.||..+++.++|+++|++|+.....+..+...|+.+++.+++.+++. ++|.+.+...
T Consensus       427 ~kPnDsRlw~aLG~CY~kl~~~~eAiKCykrai~~~dte~~~l~~LakLye~l~d~~eAa-~~yek~v~~~  496 (559)
T KOG1155|consen  427 LKPNDSRLWVALGECYEKLNRLEEAIKCYKRAILLGDTEGSALVRLAKLYEELKDLNEAA-QYYEKYVEVS  496 (559)
T ss_pred             cCCCchHHHHHHHHHHHHhccHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHhHHHHH-HHHHHHHHHH
Confidence            999999999999999999999999999999999999888999999999999999887654 4588877644

>KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.17  E-value=3.9e-10  Score=106.89  Aligned_cols=141  Identities=18%  Similarity=0.122  Sum_probs=105.5

Q ss_pred             HHHHHHhhhhhhhhhhhhhHHHHHHHHHHHHHhhccchhhhhhhhHHHHHHHhhchhhhHHHHHHHHhcCHHHHHHHHHH
Q 017811          179 IGAADRRKMDGNALFKEEKLEEAMQQYEMAIAYMGDDFMFQLFGKYRDMALAVKNPCHLNMAACLLKLKRYEEAIGQCSL  258 (365)
Q Consensus       179 ~~~a~~~k~~G~~~~~~~~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~kl~~~~~A~~~~~~  258 (365)
                      ...|..+.-.|..+|-.|++..|...+.++|.+.|.+..                 +|..||..|+..++..+-..++++
T Consensus       323 e~~A~al~~~gtF~fL~g~~~~a~~d~~~~I~l~~~~~~-----------------lyI~~a~~y~d~~~~~~~~~~F~~  385 (606)
T KOG0547|consen  323 EYMAEALLLRGTFHFLKGDSLGAQEDFDAAIKLDPAFNS-----------------LYIKRAAAYADENQSEKMWKDFNK  385 (606)
T ss_pred             HHHHHHHHHhhhhhhhcCCchhhhhhHHHHHhcCcccch-----------------HHHHHHHHHhhhhccHHHHHHHHH
Confidence            445778889999999999999999999999999988633                 477888888888888888888888


Q ss_pred             HHhCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCCCccc
Q 017811          259 VLGEDENNVKALFRRGKARAELGQTDAAREDFLKAGKFAPEDKSIARELRLLAEHEKAVYKKQKEIYKGIFGPRPEPKQ  337 (365)
Q Consensus       259 aL~~~p~n~ka~~~~g~a~~~l~~~~~A~~~l~~al~l~P~n~~~~~~l~~l~~~~~~~~~~~k~~y~kmf~~~~~~~~  337 (365)
                      |..+||+|+..||.||++++-+++|++|+.+|++|+.|+|+|.-...++.-+.-++.+..+. ...|...-.+-|.+..
T Consensus       386 A~~ldp~n~dvYyHRgQm~flL~q~e~A~aDF~Kai~L~pe~~~~~iQl~~a~Yr~~k~~~~-m~~Fee~kkkFP~~~E  463 (606)
T KOG0547|consen  386 AEDLDPENPDVYYHRGQMRFLLQQYEEAIADFQKAISLDPENAYAYIQLCCALYRQHKIAES-MKTFEEAKKKFPNCPE  463 (606)
T ss_pred             HHhcCCCCCchhHhHHHHHHHHHHHHHHHHHHHHHhhcChhhhHHHHHHHHHHHHHHHHHHH-HHHHHHHHHhCCCCch
Confidence            88888888888888888888888888888888888888888766665555444444433322 2335444344444443

>KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning]

Probab=99.16  E-value=2.6e-10  Score=111.63  Aligned_cols=136  Identities=17%  Similarity=0.147  Sum_probs=112.0

Q ss_pred             HhhhhhhhhhhhhhHHHHHHHHHHHHHhhccchhhhhhhhHHHHHHHhhchhhhHHHHHHHHhcCHHHHHHHHHHHHhCC
Q 017811          184 RRKMDGNALFKEEKLEEAMQQYEMAIAYMGDDFMFQLFGKYRDMALAVKNPCHLNMAACLLKLKRYEEAIGQCSLVLGED  263 (365)
Q Consensus       184 ~~k~~G~~~~~~~~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~kl~~~~~A~~~~~~aL~~~  263 (365)
                      +|...|..|.++++|+.|.-+|++|++++|.+.                 .+..-+|..+.++|+.++|+..+++|+.+|
T Consensus       491 AwYGlG~vy~Kqek~e~Ae~~fqkA~~INP~ns-----------------vi~~~~g~~~~~~k~~d~AL~~~~~A~~ld  553 (638)
T KOG1126|consen  491 AWYGLGTVYLKQEKLEFAEFHFQKAVEINPSNS-----------------VILCHIGRIQHQLKRKDKALQLYEKAIHLD  553 (638)
T ss_pred             HHHhhhhheeccchhhHHHHHHHhhhcCCccch-----------------hHHhhhhHHHHHhhhhhHHHHHHHHHHhcC
Confidence            455677788888888888888888888887752                 346778888889999999999999999999


Q ss_pred             CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCCCccc
Q 017811          264 ENNVKALFRRGKARAELGQTDAAREDFLKAGKFAPEDKSIARELRLLAEHEKAVYKKQKEIYKGIFGPRPEPKQ  337 (365)
Q Consensus       264 p~n~ka~~~~g~a~~~l~~~~~A~~~l~~al~l~P~n~~~~~~l~~l~~~~~~~~~~~k~~y~kmf~~~~~~~~  337 (365)
                      |.|+-+.|.+|.++..+++|++|+..|+..-++-|++..+...++++.++.+....+.+. |.=+.+.+|...+
T Consensus       554 ~kn~l~~~~~~~il~~~~~~~eal~~LEeLk~~vP~es~v~~llgki~k~~~~~~~Al~~-f~~A~~ldpkg~~  626 (638)
T KOG1126|consen  554 PKNPLCKYHRASILFSLGRYVEALQELEELKELVPQESSVFALLGKIYKRLGNTDLALLH-FSWALDLDPKGAQ  626 (638)
T ss_pred             CCCchhHHHHHHHHHhhcchHHHHHHHHHHHHhCcchHHHHHHHHHHHHHHccchHHHHh-hHHHhcCCCccch
Confidence            999999999999999999999999999999999999999999999988888887766665 7777777776555

>PRK11189 lipoprotein NlpI; Provisional

Probab=99.16  E-value=5.4e-10  Score=104.27  Aligned_cols=127  Identities=14%  Similarity=-0.006  Sum_probs=107.2

Q ss_pred             hhHHHHHHHHHHHHHhhccchhhhhhhhHHHHHHHhhchhhhHHHHHHHHhcCHHHHHHHHHHHHhCCCCCHHHHHHHHH
Q 017811          196 EKLEEAMQQYEMAIAYMGDDFMFQLFGKYRDMALAVKNPCHLNMAACLLKLKRYEEAIGQCSLVLGEDENNVKALFRRGK  275 (365)
Q Consensus       196 ~~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~kl~~~~~A~~~~~~aL~~~p~n~ka~~~~g~  275 (365)
                      +..+.++..+.++|...+.+..             .....|+++|.+|..+|++.+|+.+|+++++++|+++.+|+.+|.
T Consensus        40 ~~~e~~i~~~~~~l~~~~~~~~-------------~~a~~~~~~g~~~~~~g~~~~A~~~~~~Al~l~P~~~~a~~~lg~  106 (296)
T PRK11189         40 LQQEVILARLNQILASRDLTDE-------------ERAQLHYERGVLYDSLGLRALARNDFSQALALRPDMADAYNYLGI  106 (296)
T ss_pred             hHHHHHHHHHHHHHccccCCcH-------------hhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCHHHHHHHHH
Confidence            4667899999999975543211             123459999999999999999999999999999999999999999


Q ss_pred             HHHHcCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCCCcc
Q 017811          276 ARAELGQTDAAREDFLKAGKFAPEDKSIARELRLLAEHEKAVYKKQKEIYKGIFGPRPEPK  336 (365)
Q Consensus       276 a~~~l~~~~~A~~~l~~al~l~P~n~~~~~~l~~l~~~~~~~~~~~k~~y~kmf~~~~~~~  336 (365)
                      ++..+|++++|+..|.++++++|++..+...++.+....++..+... .|.+.+...|+..
T Consensus       107 ~~~~~g~~~~A~~~~~~Al~l~P~~~~a~~~lg~~l~~~g~~~eA~~-~~~~al~~~P~~~  166 (296)
T PRK11189        107 YLTQAGNFDAAYEAFDSVLELDPTYNYAYLNRGIALYYGGRYELAQD-DLLAFYQDDPNDP  166 (296)
T ss_pred             HHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHH-HHHHHHHhCCCCH
Confidence            99999999999999999999999999999999988777666665544 4777777777654

>PRK12370 invasion protein regulator; Provisional

Probab=99.16  E-value=8.7e-10  Score=111.66  Aligned_cols=134  Identities=10%  Similarity=-0.129  Sum_probs=116.0

Q ss_pred             HhhhhhhhhhhhhhHHHHHHHHHHHHHhhccchhhhhhhhHHHHHHHhhchhhhHHHHHHHHhcCHHHHHHHHHHHHhCC
Q 017811          184 RRKMDGNALFKEEKLEEAMQQYEMAIAYMGDDFMFQLFGKYRDMALAVKNPCHLNMAACLLKLKRYEEAIGQCSLVLGED  263 (365)
Q Consensus       184 ~~k~~G~~~~~~~~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~kl~~~~~A~~~~~~aL~~~  263 (365)
                      .+...|..+...|++++|+..|++|+++.|++..                 +++++|.++..+|++++|+..++++++++
T Consensus       340 a~~~lg~~~~~~g~~~~A~~~~~~Al~l~P~~~~-----------------a~~~lg~~l~~~G~~~eAi~~~~~Al~l~  402 (553)
T PRK12370        340 ALGLLGLINTIHSEYIVGSLLFKQANLLSPISAD-----------------IKYYYGWNLFMAGQLEEALQTINECLKLD  402 (553)
T ss_pred             HHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHH-----------------HHHHHHHHHHHCCCHHHHHHHHHHHHhcC
Confidence            4556788899999999999999999999998744                 48999999999999999999999999999


Q ss_pred             CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCcHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCCCc
Q 017811          264 ENNVKALFRRGKARAELGQTDAAREDFLKAGKFA-PEDKSIARELRLLAEHEKAVYKKQKEIYKGIFGPRPEP  335 (365)
Q Consensus       264 p~n~ka~~~~g~a~~~l~~~~~A~~~l~~al~l~-P~n~~~~~~l~~l~~~~~~~~~~~k~~y~kmf~~~~~~  335 (365)
                      |.++.+++.++.+++..|++++|+..+++++... |+++.+...++.+....++..++... +.++....+..
T Consensus       403 P~~~~~~~~~~~~~~~~g~~eeA~~~~~~~l~~~~p~~~~~~~~la~~l~~~G~~~eA~~~-~~~~~~~~~~~  474 (553)
T PRK12370        403 PTRAAAGITKLWITYYHTGIDDAIRLGDELRSQHLQDNPILLSMQVMFLSLKGKHELARKL-TKEISTQEITG  474 (553)
T ss_pred             CCChhhHHHHHHHHHhccCHHHHHHHHHHHHHhccccCHHHHHHHHHHHHhCCCHHHHHHH-HHHhhhccchh
Confidence            9999988888888999999999999999999885 78888888899888777776655554 77777666643

>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B

Probab=99.16  E-value=1.5e-10  Score=82.33  Aligned_cols=65  Identities=25%  Similarity=0.375  Sum_probs=61.0

Q ss_pred             hHHHHHHHHhcCHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCcH
Q 017811          237 LNMAACLLKLKRYEEAIGQCSLVLGEDENNVKALFRRGKARAELGQTDAAREDFLKAGKFAPEDK  301 (365)
Q Consensus       237 ~nla~~~~kl~~~~~A~~~~~~aL~~~p~n~ka~~~~g~a~~~l~~~~~A~~~l~~al~l~P~n~  301 (365)
                      +.+|..+++.|+|++|+..+++++..+|+++.+++.+|.++..+|++++|+..|+++++++|+|+
T Consensus         1 ~~~a~~~~~~g~~~~A~~~~~~~l~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~~P~~p   65 (65)
T PF13432_consen    1 YALARALYQQGDYDEAIAAFEQALKQDPDNPEAWYLLGRILYQQGRYDEALAYYERALELDPDNP   65 (65)
T ss_dssp             HHHHHHHHHCTHHHHHHHHHHHHHCCSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT-H
T ss_pred             ChHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCC
Confidence            46899999999999999999999999999999999999999999999999999999999999985

>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A

Probab=99.15  E-value=1.3e-10  Score=87.31  Aligned_cols=83  Identities=24%  Similarity=0.315  Sum_probs=72.9

Q ss_pred             hhhHHHHHHHHHHHHHhhccchhhhhhhhHHHHHHHhhchhhhHHHHHHHHhcCHHHHHHHHHHHHhCCCCCHHHHHHHH
Q 017811          195 EEKLEEAMQQYEMAIAYMGDDFMFQLFGKYRDMALAVKNPCHLNMAACLLKLKRYEEAIGQCSLVLGEDENNVKALFRRG  274 (365)
Q Consensus       195 ~~~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~kl~~~~~A~~~~~~aL~~~p~n~ka~~~~g  274 (365)
                      +|+|+.|+..|++++...|.+..               ...++++|.||+++|+|++|+..+++ +..+|.+...++.+|
T Consensus         2 ~~~y~~Ai~~~~k~~~~~~~~~~---------------~~~~~~la~~~~~~~~y~~A~~~~~~-~~~~~~~~~~~~l~a   65 (84)
T PF12895_consen    2 QGNYENAIKYYEKLLELDPTNPN---------------SAYLYNLAQCYFQQGKYEEAIELLQK-LKLDPSNPDIHYLLA   65 (84)
T ss_dssp             TT-HHHHHHHHHHHHHHHCGTHH---------------HHHHHHHHHHHHHTTHHHHHHHHHHC-HTHHHCHHHHHHHHH
T ss_pred             CccHHHHHHHHHHHHHHCCCChh---------------HHHHHHHHHHHHHCCCHHHHHHHHHH-hCCCCCCHHHHHHHH
Confidence            58999999999999999986321               22478899999999999999999999 999999999999999


Q ss_pred             HHHHHcCCHHHHHHHHHHH
Q 017811          275 KARAELGQTDAAREDFLKA  293 (365)
Q Consensus       275 ~a~~~l~~~~~A~~~l~~a  293 (365)
                      +|+..+|+|++|+..|+++
T Consensus        66 ~~~~~l~~y~eAi~~l~~~   84 (84)
T PF12895_consen   66 RCLLKLGKYEEAIKALEKA   84 (84)
T ss_dssp             HHHHHTT-HHHHHHHHHHH
T ss_pred             HHHHHhCCHHHHHHHHhcC
Confidence            9999999999999999875

>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW

Probab=99.15  E-value=1.4e-09  Score=95.88  Aligned_cols=149  Identities=17%  Similarity=0.168  Sum_probs=91.3

Q ss_pred             HHHhhhhhhhhhhhhhHHHHHHHHHHHHHhhccchhhhh--------hhhHHHH---HH---H---hhchhhhHHHHHHH
Q 017811          182 ADRRKMDGNALFKEEKLEEAMQQYEMAIAYMGDDFMFQL--------FGKYRDM---AL---A---VKNPCHLNMAACLL  244 (365)
Q Consensus       182 a~~~k~~G~~~~~~~~y~~A~~~y~~al~~~~~~~~~~~--------~~~~~~~---~~---~---~~~~~~~nla~~~~  244 (365)
                      +..+...|..++..|+|++|+..|.+++...|.+...-.        .+...+.   ..   .   -...++.++|.++.
T Consensus        31 ~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~  110 (234)
T TIGR02521        31 AKIRVQLALGYLEQGDLEVAKENLDKALEHDPDDYLAYLALALYYQQLGELEKAEDSFRRALTLNPNNGDVLNNYGTFLC  110 (234)
T ss_pred             HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHH
Confidence            444555566666666666666666666665554322100        0000000   00   0   00124677788888


Q ss_pred             HhcCHHHHHHHHHHHHhCC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHHHHHHHHHH
Q 017811          245 KLKRYEEAIGQCSLVLGED--ENNVKALFRRGKARAELGQTDAAREDFLKAGKFAPEDKSIARELRLLAEHEKAVYKKQK  322 (365)
Q Consensus       245 kl~~~~~A~~~~~~aL~~~--p~n~ka~~~~g~a~~~l~~~~~A~~~l~~al~l~P~n~~~~~~l~~l~~~~~~~~~~~k  322 (365)
                      ..|++++|+..+.+++...  +.....++.+|.++...|++++|...|.+++..+|++..+...+..+....++..+.. 
T Consensus       111 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~-  189 (234)
T TIGR02521       111 QQGKYEQAMQQFEQAIEDPLYPQPARSLENAGLCALKAGDFDKAEKYLTRALQIDPQRPESLLELAELYYLRGQYKDAR-  189 (234)
T ss_pred             HcccHHHHHHHHHHHHhccccccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCChHHHHHHHHHHHHcCCHHHHH-
Confidence            8888888888888877643  4556677778888888888888888888888888887777777777766666655443 


Q ss_pred             HHHhcccCC
Q 017811          323 EIYKGIFGP  331 (365)
Q Consensus       323 ~~y~kmf~~  331 (365)
                      ..+.++...
T Consensus       190 ~~~~~~~~~  198 (234)
T TIGR02521       190 AYLERYQQT  198 (234)
T ss_pred             HHHHHHHHh
Confidence            346665554

Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.

>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C

Probab=99.15  E-value=4.8e-10  Score=83.64  Aligned_cols=98  Identities=33%  Similarity=0.415  Sum_probs=89.1

Q ss_pred             hhhhhhhhhhhhhHHHHHHHHHHHHHhhccchhhhhhhhHHHHHHHhhchhhhHHHHHHHHhcCHHHHHHHHHHHHhCCC
Q 017811          185 RKMDGNALFKEEKLEEAMQQYEMAIAYMGDDFMFQLFGKYRDMALAVKNPCHLNMAACLLKLKRYEEAIGQCSLVLGEDE  264 (365)
Q Consensus       185 ~k~~G~~~~~~~~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~kl~~~~~A~~~~~~aL~~~p  264 (365)
                      +...|..++..|++.+|+..|.+++...|.+.                 .+++++|.|+...+++++|+..+..++...|
T Consensus         3 ~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~-----------------~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~   65 (100)
T cd00189           3 LLNLGNLYYKLGDYDEALEYYEKALELDPDNA-----------------DAYYNLAAAYYKLGKYEEALEDYEKALELDP   65 (100)
T ss_pred             HHHHHHHHHHHhcHHHHHHHHHHHHhcCCccH-----------------HHHHHHHHHHHHHHHHHHHHHHHHHHHhCCC
Confidence            56788899999999999999999999988753                 2488999999999999999999999999999


Q ss_pred             CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC
Q 017811          265 NNVKALFRRGKARAELGQTDAAREDFLKAGKFAPE  299 (365)
Q Consensus       265 ~n~ka~~~~g~a~~~l~~~~~A~~~l~~al~l~P~  299 (365)
                      .+..+++.+|.++...|+++.|...+.+++.++|.
T Consensus        66 ~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~  100 (100)
T cd00189          66 DNAKAYYNLGLAYYKLGKYEEALEAYEKALELDPN  100 (100)
T ss_pred             cchhHHHHHHHHHHHHHhHHHHHHHHHHHHccCCC
Confidence            99999999999999999999999999999998874

>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A

Probab=99.12  E-value=1.3e-10  Score=83.66  Aligned_cols=67  Identities=28%  Similarity=0.342  Sum_probs=62.3

Q ss_pred             HHHHhhhhhhhhhhhhhHHHHHHHHHHHHHhhccchhhhhhhhHHHHHHHhhchhhhHHHHHHHHhc-CHHHHHHHHHHH
Q 017811          181 AADRRKMDGNALFKEEKLEEAMQQYEMAIAYMGDDFMFQLFGKYRDMALAVKNPCHLNMAACLLKLK-RYEEAIGQCSLV  259 (365)
Q Consensus       181 ~a~~~k~~G~~~~~~~~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~kl~-~~~~A~~~~~~a  259 (365)
                      .|..+...|..++..|+|.+|+..|++||++.|.+..                 +++|+|.||.++| ++.+|+.+++++
T Consensus         2 ~a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~~p~~~~-----------------~~~~~g~~~~~~~~~~~~A~~~~~~a   64 (69)
T PF13414_consen    2 NAEAWYNLGQIYFQQGDYEEAIEYFEKAIELDPNNAE-----------------AYYNLGLAYMKLGKDYEEAIEDFEKA   64 (69)
T ss_dssp             SHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHSTTHHH-----------------HHHHHHHHHHHTTTHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHH-----------------HHHHHHHHHHHhCccHHHHHHHHHHH
Confidence            3678899999999999999999999999999998644                 5999999999999 799999999999


Q ss_pred             HhCCC
Q 017811          260 LGEDE  264 (365)
Q Consensus       260 L~~~p  264 (365)
                      |+++|
T Consensus        65 l~l~P   69 (69)
T PF13414_consen   65 LKLDP   69 (69)
T ss_dssp             HHHST
T ss_pred             HHcCc
Confidence            99998

...

>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional

Probab=99.12  E-value=1.1e-09  Score=112.23  Aligned_cols=138  Identities=12%  Similarity=0.123  Sum_probs=124.0

Q ss_pred             HHHHhhhhhhhhhhhhhHHHHHHHHHHHHHhhccchhhhhhhhHHHHHHHhhchhhhHHHHHHHHhcCHHHHHHHHHHHH
Q 017811          181 AADRRKMDGNALFKEEKLEEAMQQYEMAIAYMGDDFMFQLFGKYRDMALAVKNPCHLNMAACLLKLKRYEEAIGQCSLVL  260 (365)
Q Consensus       181 ~a~~~k~~G~~~~~~~~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~kl~~~~~A~~~~~~aL  260 (365)
                      .+..+...|......|+|++|...+..++++.|++..                 ++.++|.++.+++++++|+..++++|
T Consensus        85 ~~~~~~~La~i~~~~g~~~ea~~~l~~~~~~~Pd~~~-----------------a~~~~a~~L~~~~~~eeA~~~~~~~l  147 (694)
T PRK15179         85 TELFQVLVARALEAAHRSDEGLAVWRGIHQRFPDSSE-----------------AFILMLRGVKRQQGIEAGRAEIELYF  147 (694)
T ss_pred             cHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhCCCcHH-----------------HHHHHHHHHHHhccHHHHHHHHHHHh
Confidence            3566778999999999999999999999999999743                 59999999999999999999999999


Q ss_pred             hCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCCCcc
Q 017811          261 GEDENNVKALFRRGKARAELGQTDAAREDFLKAGKFAPEDKSIARELRLLAEHEKAVYKKQKEIYKGIFGPRPEPK  336 (365)
Q Consensus       261 ~~~p~n~ka~~~~g~a~~~l~~~~~A~~~l~~al~l~P~n~~~~~~l~~l~~~~~~~~~~~k~~y~kmf~~~~~~~  336 (365)
                      ..+|+|..+++.+|.++.++|+|++|+..|++++..+|++..++-.++.+.+..++..++.. .|.+.+.......
T Consensus       148 ~~~p~~~~~~~~~a~~l~~~g~~~~A~~~y~~~~~~~p~~~~~~~~~a~~l~~~G~~~~A~~-~~~~a~~~~~~~~  222 (694)
T PRK15179        148 SGGSSSAREILLEAKSWDEIGQSEQADACFERLSRQHPEFENGYVGWAQSLTRRGALWRARD-VLQAGLDAIGDGA  222 (694)
T ss_pred             hcCCCCHHHHHHHHHHHHHhcchHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHH-HHHHHHHhhCcch
Confidence            99999999999999999999999999999999999999999999999999887777765554 4888877666554

>PRK15174 Vi polysaccharide export protein VexE; Provisional

Probab=99.11  E-value=9.6e-10  Score=113.40  Aligned_cols=129  Identities=16%  Similarity=0.074  Sum_probs=105.0

Q ss_pred             hhhhhhhhhHHHHHHHHHHHHHhhccchhhhhhhhHHHHHHHhhchhhhHHHHHHHHhcCHHH----HHHHHHHHHhCCC
Q 017811          189 GNALFKEEKLEEAMQQYEMAIAYMGDDFMFQLFGKYRDMALAVKNPCHLNMAACLLKLKRYEE----AIGQCSLVLGEDE  264 (365)
Q Consensus       189 G~~~~~~~~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~kl~~~~~----A~~~~~~aL~~~p  264 (365)
                      |..++..|++.+|+..|.+++...|.+.                 .+++++|.+|..+|++++    |+..|++++.++|
T Consensus       219 ~~~l~~~g~~~eA~~~~~~al~~~p~~~-----------------~~~~~Lg~~l~~~G~~~eA~~~A~~~~~~Al~l~P  281 (656)
T PRK15174        219 VDTLCAVGKYQEAIQTGESALARGLDGA-----------------ALRRSLGLAYYQSGRSREAKLQAAEHWRHALQFNS  281 (656)
T ss_pred             HHHHHHCCCHHHHHHHHHHHHhcCCCCH-----------------HHHHHHHHHHHHcCCchhhHHHHHHHHHHHHhhCC
Confidence            5566677777777777777777776643                 247889999999999885    7899999999999


Q ss_pred             CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCCCc
Q 017811          265 NNVKALFRRGKARAELGQTDAAREDFLKAGKFAPEDKSIARELRLLAEHEKAVYKKQKEIYKGIFGPRPEP  335 (365)
Q Consensus       265 ~n~ka~~~~g~a~~~l~~~~~A~~~l~~al~l~P~n~~~~~~l~~l~~~~~~~~~~~k~~y~kmf~~~~~~  335 (365)
                      +++.+++.+|.++..+|++++|+..|++++.++|++..+...+..+....++..+.... |.+++...|..
T Consensus       282 ~~~~a~~~lg~~l~~~g~~~eA~~~l~~al~l~P~~~~a~~~La~~l~~~G~~~eA~~~-l~~al~~~P~~  351 (656)
T PRK15174        282 DNVRIVTLYADALIRTGQNEKAIPLLQQSLATHPDLPYVRAMYARALRQVGQYTAASDE-FVQLAREKGVT  351 (656)
T ss_pred             CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHH-HHHHHHhCccc
Confidence            99999999999999999999999999999999999998888888888777777655444 78887776653

>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW

Probab=99.11  E-value=3.6e-09  Score=93.27  Aligned_cols=137  Identities=15%  Similarity=0.014  Sum_probs=104.5

Q ss_pred             HHhhhhhhhhhhhhhHHHHHHHHHHHHHhhccchhhhh--------hhhHHH---HHHH--------hhchhhhHHHHHH
Q 017811          183 DRRKMDGNALFKEEKLEEAMQQYEMAIAYMGDDFMFQL--------FGKYRD---MALA--------VKNPCHLNMAACL  243 (365)
Q Consensus       183 ~~~k~~G~~~~~~~~y~~A~~~y~~al~~~~~~~~~~~--------~~~~~~---~~~~--------~~~~~~~nla~~~  243 (365)
                      ..+...|..++..|++++|+..|.+++...|.+...-.        .+...+   ....        ....++.++|.|+
T Consensus        66 ~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~  145 (234)
T TIGR02521        66 LAYLALALYYQQLGELEKAEDSFRRALTLNPNNGDVLNNYGTFLCQQGKYEQAMQQFEQAIEDPLYPQPARSLENAGLCA  145 (234)
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHhccccccchHHHHHHHHHH
Confidence            45556777888888888888888888887776432100        000000   0000        1124688999999


Q ss_pred             HHhcCHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHHHHHHH
Q 017811          244 LKLKRYEEAIGQCSLVLGEDENNVKALFRRGKARAELGQTDAAREDFLKAGKFAPEDKSIARELRLLAEHEKAVYK  319 (365)
Q Consensus       244 ~kl~~~~~A~~~~~~aL~~~p~n~ka~~~~g~a~~~l~~~~~A~~~l~~al~l~P~n~~~~~~l~~l~~~~~~~~~  319 (365)
                      ...|++++|+..+.+++..+|.+..+++.+|.++...|++++|...+++++.+.|.+......+..+....+...+
T Consensus       146 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  221 (234)
T TIGR02521       146 LKAGDFDKAEKYLTRALQIDPQRPESLLELAELYYLRGQYKDARAYLERYQQTYNQTAESLWLGIRIARALGDVAA  221 (234)
T ss_pred             HHcCCHHHHHHHHHHHHHhCcCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhhHHH
Confidence            9999999999999999999999999999999999999999999999999999999888877777777665555443

Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.

>CHL00033 ycf3 photosystem I assembly protein Ycf3

Probab=99.09  E-value=3e-09  Score=90.73  Aligned_cols=110  Identities=20%  Similarity=0.101  Sum_probs=93.1

Q ss_pred             HHHHHHHhhhhhhhhhhhhhHHHHHHHHHHHHHhhccchhhhhhhhHHHHHHHhhchhhhHHHHHHHHhcCHHHHHHHHH
Q 017811          178 RIGAADRRKMDGNALFKEEKLEEAMQQYEMAIAYMGDDFMFQLFGKYRDMALAVKNPCHLNMAACLLKLKRYEEAIGQCS  257 (365)
Q Consensus       178 ~~~~a~~~k~~G~~~~~~~~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~kl~~~~~A~~~~~  257 (365)
                      ....+..+...|..++..|+|++|+..|.+|+.+.++...              ...+++|+|.+|..+|++++|+..|.
T Consensus        31 ~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~--------------~~~~~~~lg~~~~~~g~~~eA~~~~~   96 (168)
T CHL00033         31 GEKEAFTYYRDGMSAQSEGEYAEALQNYYEAMRLEIDPYD--------------RSYILYNIGLIHTSNGEHTKALEYYF   96 (168)
T ss_pred             hhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccccchh--------------hHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence            3457888999999999999999999999999998765321              12369999999999999999999999


Q ss_pred             HHHhCCCCCHHHHHHHHHHHH-------HcCCHH-------HHHHHHHHHHhhCCCcH
Q 017811          258 LVLGEDENNVKALFRRGKARA-------ELGQTD-------AAREDFLKAGKFAPEDK  301 (365)
Q Consensus       258 ~aL~~~p~n~ka~~~~g~a~~-------~l~~~~-------~A~~~l~~al~l~P~n~  301 (365)
                      +++.++|.+..+++.+|.++.       .+|+++       +|+..|++++.++|.+.
T Consensus        97 ~Al~~~~~~~~~~~~la~i~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~a~~~~p~~~  154 (168)
T CHL00033         97 QALERNPFLPQALNNMAVICHYRGEQAIEQGDSEIAEAWFDQAAEYWKQAIALAPGNY  154 (168)
T ss_pred             HHHHhCcCcHHHHHHHHHHHHHhhHHHHHcccHHHHHHHHHHHHHHHHHHHHhCcccH
Confidence            999999999999999999999       777766       56666667888888654

>PRK15331 chaperone protein SicA; Provisional

Probab=99.08  E-value=2e-09  Score=89.43  Aligned_cols=106  Identities=17%  Similarity=0.243  Sum_probs=96.5

Q ss_pred             HHHhhhhhhhhhhhhhHHHHHHHHHHHHHhhccchhhhhhhhHHHHHHHhhchhhhHHHHHHHHhcCHHHHHHHHHHHHh
Q 017811          182 ADRRKMDGNALFKEEKLEEAMQQYEMAIAYMGDDFMFQLFGKYRDMALAVKNPCHLNMAACLLKLKRYEEAIGQCSLVLG  261 (365)
Q Consensus       182 a~~~k~~G~~~~~~~~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~kl~~~~~A~~~~~~aL~  261 (365)
                      .+.....|-.+|..|+|.+|...|+-...+.+.+..+                 ++.||.|+..+++|++|+..|..+..
T Consensus        37 le~iY~~Ay~~y~~Gk~~eA~~~F~~L~~~d~~n~~Y-----------------~~GLaa~~Q~~k~y~~Ai~~Y~~A~~   99 (165)
T PRK15331         37 MDGLYAHAYEFYNQGRLDEAETFFRFLCIYDFYNPDY-----------------TMGLAAVCQLKKQFQKACDLYAVAFT   99 (165)
T ss_pred             HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcCcHHH-----------------HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            4667889999999999999999999998888887665                 89999999999999999999999999


Q ss_pred             CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCcHHHHH
Q 017811          262 EDENNVKALFRRGKARAELGQTDAAREDFLKAGKFAPEDKSIAR  305 (365)
Q Consensus       262 ~~p~n~ka~~~~g~a~~~l~~~~~A~~~l~~al~l~P~n~~~~~  305 (365)
                      ++++++..+|+.|+||+.+|+.+.|+..|..++. .|.+..++.
T Consensus       100 l~~~dp~p~f~agqC~l~l~~~~~A~~~f~~a~~-~~~~~~l~~  142 (165)
T PRK15331        100 LLKNDYRPVFFTGQCQLLMRKAAKARQCFELVNE-RTEDESLRA  142 (165)
T ss_pred             cccCCCCccchHHHHHHHhCCHHHHHHHHHHHHh-CcchHHHHH
Confidence            9999999999999999999999999999999998 566555443

>PLN02789 farnesyltranstransferase

Probab=99.05  E-value=6.3e-09  Score=97.64  Aligned_cols=141  Identities=13%  Similarity=0.010  Sum_probs=108.9

Q ss_pred             HHHHhhhhhhhhhhhh-hHHHHHHHHHHHHHhhccchhhhhhhhHHHHHHHhhchhhhHHHHHHHHhcCH--HHHHHHHH
Q 017811          181 AADRRKMDGNALFKEE-KLEEAMQQYEMAIAYMGDDFMFQLFGKYRDMALAVKNPCHLNMAACLLKLKRY--EEAIGQCS  257 (365)
Q Consensus       181 ~a~~~k~~G~~~~~~~-~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~kl~~~--~~A~~~~~  257 (365)
                      ....+..+|..+...+ ++.+|+..+.+++..+|+++.                 ++++++.++.+++..  .+++.+++
T Consensus        70 ~ytaW~~R~~iL~~L~~~l~eeL~~~~~~i~~npknyq-----------------aW~~R~~~l~~l~~~~~~~el~~~~  132 (320)
T PLN02789         70 NYTVWHFRRLCLEALDADLEEELDFAEDVAEDNPKNYQ-----------------IWHHRRWLAEKLGPDAANKELEFTR  132 (320)
T ss_pred             hHHHHHHHHHHHHHcchhHHHHHHHHHHHHHHCCcchH-----------------HhHHHHHHHHHcCchhhHHHHHHHH
Confidence            3445566677777766 567788888888877777643                 488999999888874  78899999


Q ss_pred             HHHhCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHH------HHHHHHHHHHHhcccCC
Q 017811          258 LVLGEDENNVKALFRRGKARAELGQTDAAREDFLKAGKFAPEDKSIARELRLLAEHE------KAVYKKQKEIYKGIFGP  331 (365)
Q Consensus       258 ~aL~~~p~n~ka~~~~g~a~~~l~~~~~A~~~l~~al~l~P~n~~~~~~l~~l~~~~------~~~~~~~k~~y~kmf~~  331 (365)
                      ++|+++|.|..||+.|+.++..+|+|++|+..+.++++++|.|..+......+....      ....+.+-....+++..
T Consensus       133 kal~~dpkNy~AW~~R~w~l~~l~~~~eeL~~~~~~I~~d~~N~sAW~~R~~vl~~~~~l~~~~~~~e~el~y~~~aI~~  212 (320)
T PLN02789        133 KILSLDAKNYHAWSHRQWVLRTLGGWEDELEYCHQLLEEDVRNNSAWNQRYFVITRSPLLGGLEAMRDSELKYTIDAILA  212 (320)
T ss_pred             HHHHhCcccHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHCCCchhHHHHHHHHHHhccccccccccHHHHHHHHHHHHHh
Confidence            999999999999999999999999999999999999999999999888887765433      11224566656677777


Q ss_pred             CCCcccc
Q 017811          332 RPEPKQK  338 (365)
Q Consensus       332 ~~~~~~~  338 (365)
                      .|.+...
T Consensus       213 ~P~N~Sa  219 (320)
T PLN02789        213 NPRNESP  219 (320)
T ss_pred             CCCCcCH
Confidence            6655443

>PRK15174 Vi polysaccharide export protein VexE; Provisional

Probab=99.03  E-value=3e-09  Score=109.79  Aligned_cols=133  Identities=16%  Similarity=0.174  Sum_probs=100.9

Q ss_pred             HhhhhhhhhhhhhhHHH----HHHHHHHHHHhhccchhhhhhhhHHHHHHHhhchhhhHHHHHHHHhcCHHHHHHHHHHH
Q 017811          184 RRKMDGNALFKEEKLEE----AMQQYEMAIAYMGDDFMFQLFGKYRDMALAVKNPCHLNMAACLLKLKRYEEAIGQCSLV  259 (365)
Q Consensus       184 ~~k~~G~~~~~~~~y~~----A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~kl~~~~~A~~~~~~a  259 (365)
                      .+...|..++..|++.+    |+..|++++.+.|.+..                 ++.++|.++...|++++|+..++++
T Consensus       248 ~~~~Lg~~l~~~G~~~eA~~~A~~~~~~Al~l~P~~~~-----------------a~~~lg~~l~~~g~~~eA~~~l~~a  310 (656)
T PRK15174        248 LRRSLGLAYYQSGRSREAKLQAAEHWRHALQFNSDNVR-----------------IVTLYADALIRTGQNEKAIPLLQQS  310 (656)
T ss_pred             HHHHHHHHHHHcCCchhhHHHHHHHHHHHHhhCCCCHH-----------------HHHHHHHHHHHCCCHHHHHHHHHHH
Confidence            44567888899999985    89999999999887643                 4788888888888888888888888


Q ss_pred             HhCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCCC
Q 017811          260 LGEDENNVKALFRRGKARAELGQTDAAREDFLKAGKFAPEDKSIARELRLLAEHEKAVYKKQKEIYKGIFGPRPE  334 (365)
Q Consensus       260 L~~~p~n~ka~~~~g~a~~~l~~~~~A~~~l~~al~l~P~n~~~~~~l~~l~~~~~~~~~~~k~~y~kmf~~~~~  334 (365)
                      +.++|++..+++.+|.++..+|++++|+..|++++..+|++......+..+....++..+. ...|.+.+...|+
T Consensus       311 l~l~P~~~~a~~~La~~l~~~G~~~eA~~~l~~al~~~P~~~~~~~~~a~al~~~G~~deA-~~~l~~al~~~P~  384 (656)
T PRK15174        311 LATHPDLPYVRAMYARALRQVGQYTAASDEFVQLAREKGVTSKWNRYAAAALLQAGKTSEA-ESVFEHYIQARAS  384 (656)
T ss_pred             HHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCccchHHHHHHHHHHHHCCCHHHH-HHHHHHHHHhChh
Confidence            8888888888888888888888888888888888888888766555555554444444333 3336665555544

>KOG1308 consensus Hsp70-interacting protein Hip/Transient component of progesterone receptor complexes and an Hsp70-binding protein [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]

Probab=99.03  E-value=2.2e-10  Score=104.40  Aligned_cols=109  Identities=23%  Similarity=0.302  Sum_probs=102.3

Q ss_pred             CHHHHHHHHHHhhhhhhhhhhhhhHHHHHHHHHHHHHhhccchhhhhhhhHHHHHHHhhchhhhHHHHHHHHhcCHHHHH
Q 017811          174 TVEERIGAADRRKMDGNALFKEEKLEEAMQQYEMAIAYMGDDFMFQLFGKYRDMALAVKNPCHLNMAACLLKLKRYEEAI  253 (365)
Q Consensus       174 ~~~e~~~~a~~~k~~G~~~~~~~~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~kl~~~~~A~  253 (365)
                      ..++.++.|...+..+...+..|.++.|+..|..||.+.|...                 .+|.++|.++++++++..|+
T Consensus       106 ~Tee~~eqa~e~k~~A~eAln~G~~~~ai~~~t~ai~lnp~~a-----------------~l~~kr~sv~lkl~kp~~ai  168 (377)
T KOG1308|consen  106 ITEEMMDQANDKKVQASEALNDGEFDTAIELFTSAIELNPPLA-----------------ILYAKRASVFLKLKKPNAAI  168 (377)
T ss_pred             hhHHHHHHHHHHHHHHHHHhcCcchhhhhcccccccccCCchh-----------------hhcccccceeeeccCCchhh
Confidence            4567899999999999999999999999999999999999853                 35999999999999999999


Q ss_pred             HHHHHHHhCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC
Q 017811          254 GQCSLVLGEDENNVKALFRRGKARAELGQTDAAREDFLKAGKFAPE  299 (365)
Q Consensus       254 ~~~~~aL~~~p~n~ka~~~~g~a~~~l~~~~~A~~~l~~al~l~P~  299 (365)
                      .+|..+++++|+..+-|-.+|.++..+|+|++|..+|..+++++-+
T Consensus       169 rD~d~A~ein~Dsa~~ykfrg~A~rllg~~e~aa~dl~~a~kld~d  214 (377)
T KOG1308|consen  169 RDCDFAIEINPDSAKGYKFRGYAERLLGNWEEAAHDLALACKLDYD  214 (377)
T ss_pred             hhhhhhhccCcccccccchhhHHHHHhhchHHHHHHHHHHHhcccc
Confidence            9999999999999999999999999999999999999999998744

>KOG0553 consensus TPR repeat-containing protein [General function prediction only]

Probab=99.03  E-value=1.7e-09  Score=97.25  Aligned_cols=101  Identities=22%  Similarity=0.205  Sum_probs=95.2

Q ss_pred             hhHHHHHHHHhcCHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHHH
Q 017811          236 HLNMAACLLKLKRYEEAIGQCSLVLGEDENNVKALFRRGKARAELGQTDAAREDFLKAGKFAPEDKSIARELRLLAEHEK  315 (365)
Q Consensus       236 ~~nla~~~~kl~~~~~A~~~~~~aL~~~p~n~ka~~~~g~a~~~l~~~~~A~~~l~~al~l~P~n~~~~~~l~~l~~~~~  315 (365)
                      +-+-|.-+++.++|.+|+..|++||+++|.|+-.|.+||.||..||+|+.|+++.+.|+.+||....+...|+.++..+.
T Consensus        84 LK~eGN~~m~~~~Y~eAv~kY~~AI~l~P~nAVyycNRAAAy~~Lg~~~~AVkDce~Al~iDp~yskay~RLG~A~~~~g  163 (304)
T KOG0553|consen   84 LKNEGNKLMKNKDYQEAVDKYTEAIELDPTNAVYYCNRAAAYSKLGEYEDAVKDCESALSIDPHYSKAYGRLGLAYLALG  163 (304)
T ss_pred             HHHHHHHHHHhhhHHHHHHHHHHHHhcCCCcchHHHHHHHHHHHhcchHHHHHHHHHHHhcChHHHHHHHHHHHHHHccC
Confidence            44667888999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHhcccCCCCCccc
Q 017811          316 AVYKKQKEIYKGIFGPRPEPKQ  337 (365)
Q Consensus       316 ~~~~~~k~~y~kmf~~~~~~~~  337 (365)
                      ++.++... |+|.+..+|.+..
T Consensus       164 k~~~A~~a-ykKaLeldP~Ne~  184 (304)
T KOG0553|consen  164 KYEEAIEA-YKKALELDPDNES  184 (304)
T ss_pred             cHHHHHHH-HHhhhccCCCcHH
Confidence            99988888 9999999998873

>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]

Probab=99.02  E-value=4.8e-09  Score=92.70  Aligned_cols=124  Identities=17%  Similarity=0.134  Sum_probs=113.5

Q ss_pred             HHhhhhhhhhhhhhhHHHHHHHHHHHHHhhccchhhhhhhhHHHHHHHhhchhhhHHHHHHHHhcCHHHHHHHHHHHHhC
Q 017811          183 DRRKMDGNALFKEEKLEEAMQQYEMAIAYMGDDFMFQLFGKYRDMALAVKNPCHLNMAACLLKLKRYEEAIGQCSLVLGE  262 (365)
Q Consensus       183 ~~~k~~G~~~~~~~~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~kl~~~~~A~~~~~~aL~~  262 (365)
                      ..++..|...+..|+|..|+..+++|..+.|.++.+                 ++-+|.||.++|+++.|...|.+++++
T Consensus       101 ~ll~~~gk~~~~~g~~~~A~~~~rkA~~l~p~d~~~-----------------~~~lgaaldq~Gr~~~Ar~ay~qAl~L  163 (257)
T COG5010         101 ELLAAQGKNQIRNGNFGEAVSVLRKAARLAPTDWEA-----------------WNLLGAALDQLGRFDEARRAYRQALEL  163 (257)
T ss_pred             HHHHHHHHHHHHhcchHHHHHHHHHHhccCCCChhh-----------------hhHHHHHHHHccChhHHHHHHHHHHHh
Confidence            345559999999999999999999999999998764                 999999999999999999999999999


Q ss_pred             CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHHHHHHHHHHH
Q 017811          263 DENNVKALFRRGKARAELGQTDAAREDFLKAGKFAPEDKSIARELRLLAEHEKAVYKKQKE  323 (365)
Q Consensus       263 ~p~n~ka~~~~g~a~~~l~~~~~A~~~l~~al~l~P~n~~~~~~l~~l~~~~~~~~~~~k~  323 (365)
                      .|+++.++.++|..|+-.|+++.|...+..+...-+.|..+...|..+...+......++-
T Consensus       164 ~~~~p~~~nNlgms~~L~gd~~~A~~lll~a~l~~~ad~~v~~NLAl~~~~~g~~~~A~~i  224 (257)
T COG5010         164 APNEPSIANNLGMSLLLRGDLEDAETLLLPAYLSPAADSRVRQNLALVVGLQGDFREAEDI  224 (257)
T ss_pred             ccCCchhhhhHHHHHHHcCCHHHHHHHHHHHHhCCCCchHHHHHHHHHHhhcCChHHHHhh
Confidence            9999999999999999999999999999999998888999999999988777776655544

>PRK10803 tol-pal system protein YbgF; Provisional

Probab=98.99  E-value=9.9e-09  Score=93.59  Aligned_cols=114  Identities=13%  Similarity=0.144  Sum_probs=96.7

Q ss_pred             HHhhhhhhhh-hhhhhHHHHHHHHHHHHHhhccchhhhhhhhHHHHHHHhhchhhhHHHHHHHHhcCHHHHHHHHHHHHh
Q 017811          183 DRRKMDGNAL-FKEEKLEEAMQQYEMAIAYMGDDFMFQLFGKYRDMALAVKNPCHLNMAACLLKLKRYEEAIGQCSLVLG  261 (365)
Q Consensus       183 ~~~k~~G~~~-~~~~~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~kl~~~~~A~~~~~~aL~  261 (365)
                      ......+..+ ++.|+|.+|+..|+..+...|+...              ...+++.+|.+|+..|+|++|+..|..++.
T Consensus       143 ~~~Y~~A~~l~~~~~~y~~Ai~af~~fl~~yP~s~~--------------a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~  208 (263)
T PRK10803        143 NTDYNAAIALVQDKSRQDDAIVAFQNFVKKYPDSTY--------------QPNANYWLGQLNYNKGKKDDAAYYFASVVK  208 (263)
T ss_pred             HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCcc--------------hHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence            3345555555 5679999999999999999998532              133589999999999999999999999999


Q ss_pred             CCCCC---HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCcHHHHHHHHHH
Q 017811          262 EDENN---VKALFRRGKARAELGQTDAAREDFLKAGKFAPEDKSIARELRLL  310 (365)
Q Consensus       262 ~~p~n---~ka~~~~g~a~~~l~~~~~A~~~l~~al~l~P~n~~~~~~l~~l  310 (365)
                      ..|++   +.+++.+|.++..+|++++|...|+++++..|++..+.....++
T Consensus       209 ~yP~s~~~~dAl~klg~~~~~~g~~~~A~~~~~~vi~~yP~s~~a~~A~~rL  260 (263)
T PRK10803        209 NYPKSPKAADAMFKVGVIMQDKGDTAKAKAVYQQVIKKYPGTDGAKQAQKRL  260 (263)
T ss_pred             HCCCCcchhHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCHHHHHHHHHH
Confidence            88875   67999999999999999999999999999999988766555544

>KOG1125 consensus TPR repeat-containing protein [General function prediction only]

Probab=98.97  E-value=9.3e-10  Score=106.32  Aligned_cols=96  Identities=21%  Similarity=0.231  Sum_probs=91.1

Q ss_pred             hhhhhhhhhhhHHHHHHHHHHHHHhhccchhhhhhhhHHHHHHHhhchhhhHHHHHHHHhcCHHHHHHHHHHHHhCCCCC
Q 017811          187 MDGNALFKEEKLEEAMQQYEMAIAYMGDDFMFQLFGKYRDMALAVKNPCHLNMAACLLKLKRYEEAIGQCSLVLGEDENN  266 (365)
Q Consensus       187 ~~G~~~~~~~~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~kl~~~~~A~~~~~~aL~~~p~n  266 (365)
                      ..|..|+-.++|++|+.+|+.||...|.|+.                 +++.||..+..-.+..+||..|++||++.|..
T Consensus       435 ~LGVLy~ls~efdraiDcf~~AL~v~Pnd~~-----------------lWNRLGAtLAN~~~s~EAIsAY~rALqLqP~y  497 (579)
T KOG1125|consen  435 GLGVLYNLSGEFDRAVDCFEAALQVKPNDYL-----------------LWNRLGATLANGNRSEEAISAYNRALQLQPGY  497 (579)
T ss_pred             hhHHHHhcchHHHHHHHHHHHHHhcCCchHH-----------------HHHHhhHHhcCCcccHHHHHHHHHHHhcCCCe
Confidence            4788899999999999999999999999854                 49999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC
Q 017811          267 VKALFRRGKARAELGQTDAAREDFLKAGKFAPE  299 (365)
Q Consensus       267 ~ka~~~~g~a~~~l~~~~~A~~~l~~al~l~P~  299 (365)
                      +.+.|++|.+++.+|.|.+|...|-.||.+.++
T Consensus       498 VR~RyNlgIS~mNlG~ykEA~~hlL~AL~mq~k  530 (579)
T KOG1125|consen  498 VRVRYNLGISCMNLGAYKEAVKHLLEALSMQRK  530 (579)
T ss_pred             eeeehhhhhhhhhhhhHHHHHHHHHHHHHhhhc
Confidence            999999999999999999999999999999876

>PRK11788 tetratricopeptide repeat protein; Provisional

Probab=98.97  E-value=2.2e-08  Score=96.69  Aligned_cols=133  Identities=15%  Similarity=0.089  Sum_probs=97.1

Q ss_pred             hhhhhhhhhhhhhHHHHHHHHHHHHHhhccchhhhhhhhHHHHHHHhhchhhhHHHHHHHHhcCHHHHHHHHHHHHhCCC
Q 017811          185 RKMDGNALFKEEKLEEAMQQYEMAIAYMGDDFMFQLFGKYRDMALAVKNPCHLNMAACLLKLKRYEEAIGQCSLVLGEDE  264 (365)
Q Consensus       185 ~k~~G~~~~~~~~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~kl~~~~~A~~~~~~aL~~~p  264 (365)
                      +...|..++..|++.+|+..|.++++..|..                 ..+++.+|.+|.+.|++++|+..+++++..+|
T Consensus       183 ~~~la~~~~~~~~~~~A~~~~~~al~~~p~~-----------------~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p  245 (389)
T PRK11788        183 YCELAQQALARGDLDAARALLKKALAADPQC-----------------VRASILLGDLALAQGDYAAAIEALERVEEQDP  245 (389)
T ss_pred             HHHHHHHHHhCCCHHHHHHHHHHHHhHCcCC-----------------HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCh
Confidence            3445566666677777777777776665543                 22477888889999999999999999988888


Q ss_pred             CC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCCCcc
Q 017811          265 NN-VKALFRRGKARAELGQTDAAREDFLKAGKFAPEDKSIARELRLLAEHEKAVYKKQKEIYKGIFGPRPEPK  336 (365)
Q Consensus       265 ~n-~ka~~~~g~a~~~l~~~~~A~~~l~~al~l~P~n~~~~~~l~~l~~~~~~~~~~~k~~y~kmf~~~~~~~  336 (365)
                      .+ ..++..++.+|..+|++++|...+++++.++|++..+ ..+..+....++.. .....+.+++...|+..
T Consensus       246 ~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~~p~~~~~-~~la~~~~~~g~~~-~A~~~l~~~l~~~P~~~  316 (389)
T PRK11788        246 EYLSEVLPKLMECYQALGDEAEGLEFLRRALEEYPGADLL-LALAQLLEEQEGPE-AAQALLREQLRRHPSLR  316 (389)
T ss_pred             hhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchHH-HHHHHHHHHhCCHH-HHHHHHHHHHHhCcCHH
Confidence            76 4567788889999999999999999999888877544 55666655555554 44556877877766554

>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein

Probab=98.96  E-value=1.2e-08  Score=107.72  Aligned_cols=137  Identities=25%  Similarity=0.310  Sum_probs=105.1

Q ss_pred             HHHHHhhhhhhhhhhhhhHHHHHHHHHHHHHhhccchhhhhhhhHHHHHHHhhchhhhHHHHHHHHhcCHHHHHHHHHHH
Q 017811          180 GAADRRKMDGNALFKEEKLEEAMQQYEMAIAYMGDDFMFQLFGKYRDMALAVKNPCHLNMAACLLKLKRYEEAIGQCSLV  259 (365)
Q Consensus       180 ~~a~~~k~~G~~~~~~~~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~kl~~~~~A~~~~~~a  259 (365)
                      ..+..+...|..++..|+|++|+..|.+++...|.+..                 +++.+|.+++..|++++|+..++++
T Consensus       123 ~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~-----------------~~~~la~~~~~~~~~~~A~~~~~~~  185 (899)
T TIGR02917       123 GAAELLALRGLAYLGLGQLELAQKSYEQALAIDPRSLY-----------------AKLGLAQLALAENRFDEARALIDEV  185 (899)
T ss_pred             hhHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChh-----------------hHHHHHHHHHHCCCHHHHHHHHHHH
Confidence            34567788999999999999999999999999887533                 3777888888888888888888888


Q ss_pred             HhCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCCC
Q 017811          260 LGEDENNVKALFRRGKARAELGQTDAAREDFLKAGKFAPEDKSIARELRLLAEHEKAVYKKQKEIYKGIFGPRPE  334 (365)
Q Consensus       260 L~~~p~n~ka~~~~g~a~~~l~~~~~A~~~l~~al~l~P~n~~~~~~l~~l~~~~~~~~~~~k~~y~kmf~~~~~  334 (365)
                      +..+|.+..+++.+|.++...|++++|...|++++.++|++..+...+..+....++..+. ...+..+....|.
T Consensus       186 ~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~~~~~~~~~g~~~~A-~~~~~~~~~~~~~  259 (899)
T TIGR02917       186 LTADPGNVDALLLKGDLLLSLGNIELALAAYRKAIALRPNNPAVLLALATILIEAGEFEEA-EKHADALLKKAPN  259 (899)
T ss_pred             HHhCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHH-HHHHHHHHHhCCC
Confidence            8888888888888888888888888888888888888888877777776666555544433 3445555555444

This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.

>KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription]

Probab=98.96  E-value=3.2e-08  Score=100.04  Aligned_cols=135  Identities=16%  Similarity=0.137  Sum_probs=124.2

Q ss_pred             HHHHhhhhhhhhhhhhhHHHHHHHHHHHHHhhccchhhhhhhhHHHHHHHhhchhhhHHHHHHHHhcCHHHHHHHHHHHH
Q 017811          181 AADRRKMDGNALFKEEKLEEAMQQYEMAIAYMGDDFMFQLFGKYRDMALAVKNPCHLNMAACLLKLKRYEEAIGQCSLVL  260 (365)
Q Consensus       181 ~a~~~k~~G~~~~~~~~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~kl~~~~~A~~~~~~aL  260 (365)
                      .+..+..+||.+|..|++++|...+..+|+..|.+..                 +|..||.||-.+|+..+|+...-.|-
T Consensus       138 ~l~~ll~eAN~lfarg~~eeA~~i~~EvIkqdp~~~~-----------------ay~tL~~IyEqrGd~eK~l~~~llAA  200 (895)
T KOG2076|consen  138 ELRQLLGEANNLFARGDLEEAEEILMEVIKQDPRNPI-----------------AYYTLGEIYEQRGDIEKALNFWLLAA  200 (895)
T ss_pred             HHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCccchh-----------------hHHHHHHHHHHcccHHHHHHHHHHHH
Confidence            3678899999999999999999999999999998644                 49999999999999999999999999


Q ss_pred             hCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCC
Q 017811          261 GEDENNVKALFRRGKARAELGQTDAAREDFLKAGKFAPEDKSIARELRLLAEHEKAVYKKQKEIYKGIFGPRP  333 (365)
Q Consensus       261 ~~~p~n~ka~~~~g~a~~~l~~~~~A~~~l~~al~l~P~n~~~~~~l~~l~~~~~~~~~~~k~~y~kmf~~~~  333 (365)
                      -++|.+..-|.+.+.....+|+++.|.-+|.+|++++|.|.........+.++.++...+.. .|..+|...|
T Consensus       201 HL~p~d~e~W~~ladls~~~~~i~qA~~cy~rAI~~~p~n~~~~~ers~L~~~~G~~~~Am~-~f~~l~~~~p  272 (895)
T KOG2076|consen  201 HLNPKDYELWKRLADLSEQLGNINQARYCYSRAIQANPSNWELIYERSSLYQKTGDLKRAME-TFLQLLQLDP  272 (895)
T ss_pred             hcCCCChHHHHHHHHHHHhcccHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHhChHHHHHH-HHHHHHhhCC
Confidence            99999999999999999999999999999999999999999998888888888887765554 4999999888

>PRK11447 cellulose synthase subunit BcsC; Provisional

Probab=98.96  E-value=1.6e-08  Score=110.96  Aligned_cols=126  Identities=17%  Similarity=0.126  Sum_probs=89.6

Q ss_pred             HHhhhhhhhhhhhhhHHHHHHHHHHHHHhhccchhhhhhhhHHHHHHHhhchhhhHHHHHHHHhcCHHHHHHHHHHHHhC
Q 017811          183 DRRKMDGNALFKEEKLEEAMQQYEMAIAYMGDDFMFQLFGKYRDMALAVKNPCHLNMAACLLKLKRYEEAIGQCSLVLGE  262 (365)
Q Consensus       183 ~~~k~~G~~~~~~~~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~kl~~~~~A~~~~~~aL~~  262 (365)
                      ..+...|..+++.|++++|+..|+++++..|.+....   .....+......++.++|.++++.|++++|+..|++++.+
T Consensus       304 ~a~~~Lg~~~~~~g~~~eA~~~l~~Al~~~p~~~~~~---~~~~ll~~~~~~~~~~~g~~~~~~g~~~eA~~~~~~Al~~  380 (1157)
T PRK11447        304 EALGALGQAYSQQGDRARAVAQFEKALALDPHSSNRD---KWESLLKVNRYWLLIQQGDAALKANNLAQAERLYQQARQV  380 (1157)
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCccchh---HHHHHHHhhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh
Confidence            3455677788888888888888888888777643210   0011111111223456677888888888888888888888


Q ss_pred             CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHH
Q 017811          263 DENNVKALFRRGKARAELGQTDAAREDFLKAGKFAPEDKSIARELRLLA  311 (365)
Q Consensus       263 ~p~n~ka~~~~g~a~~~l~~~~~A~~~l~~al~l~P~n~~~~~~l~~l~  311 (365)
                      +|++..+++.+|.++..+|++++|+..|+++++++|++..+...+..+.
T Consensus       381 ~P~~~~a~~~Lg~~~~~~g~~~eA~~~y~~aL~~~p~~~~a~~~L~~l~  429 (1157)
T PRK11447        381 DNTDSYAVLGLGDVAMARKDYAAAERYYQQALRMDPGNTNAVRGLANLY  429 (1157)
T ss_pred             CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Confidence            8888888888888888888888888888888888888877766665543

>KOG4555 consensus TPR repeat-containing protein [Function unknown]

Probab=98.96  E-value=3.5e-08  Score=78.23  Aligned_cols=115  Identities=24%  Similarity=0.268  Sum_probs=99.6

Q ss_pred             HHHHHHHHHhhhhhhhhhhhhhHHHHHHHHHHHHHhhccchhhhhhhhHHHHHHHhhchhhhHHHHHHHHhcCHHHHHHH
Q 017811          176 EERIGAADRRKMDGNALFKEEKLEEAMQQYEMAIAYMGDDFMFQLFGKYRDMALAVKNPCHLNMAACLLKLKRYEEAIGQ  255 (365)
Q Consensus       176 ~e~~~~a~~~k~~G~~~~~~~~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~kl~~~~~A~~~  255 (365)
                      ...++....+-.+|..+...|+.+.|++.|.++|.+.|..                 .++|+|+|.++--.|+.++|+.+
T Consensus        37 ~~~~e~S~~LEl~~valaE~g~Ld~AlE~F~qal~l~P~r-----------------aSayNNRAQa~RLq~~~e~ALdD   99 (175)
T KOG4555|consen   37 TQAIKASRELELKAIALAEAGDLDGALELFGQALCLAPER-----------------ASAYNNRAQALRLQGDDEEALDD   99 (175)
T ss_pred             hHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHhcccc-----------------hHhhccHHHHHHHcCChHHHHHH
Confidence            3567788888899999999999999999999999999986                 44699999999999999999999


Q ss_pred             HHHHHhCCCCC----HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCcHHHHHHHHH
Q 017811          256 CSLVLGEDENN----VKALFRRGKARAELGQTDAAREDFLKAGKFAPEDKSIARELRL  309 (365)
Q Consensus       256 ~~~aL~~~p~n----~ka~~~~g~a~~~l~~~~~A~~~l~~al~l~P~n~~~~~~l~~  309 (365)
                      .+++|++...-    ..+|..+|..|..+|+-+.|..+|..|.++-.  +-++.+|-.
T Consensus       100 Ln~AleLag~~trtacqa~vQRg~lyRl~g~dd~AR~DFe~AA~LGS--~FAr~QLV~  155 (175)
T KOG4555|consen  100 LNKALELAGDQTRTACQAFVQRGLLYRLLGNDDAARADFEAAAQLGS--KFAREQLVE  155 (175)
T ss_pred             HHHHHHhcCccchHHHHHHHHHHHHHHHhCchHHHHHhHHHHHHhCC--HHHHHHHHh
Confidence            99999987554    35899999999999999999999999999865  344444443

>PRK11447 cellulose synthase subunit BcsC; Provisional

Probab=98.96  E-value=7.8e-09  Score=113.35  Aligned_cols=133  Identities=15%  Similarity=0.127  Sum_probs=116.2

Q ss_pred             hhhhhhhhhhhHHHHHHHHHHHHHhhccchhhhhhhhHHHHHHHhhchhhhHHHHHHHHhcCHHHHHHHHHHHHhCCCCC
Q 017811          187 MDGNALFKEEKLEEAMQQYEMAIAYMGDDFMFQLFGKYRDMALAVKNPCHLNMAACLLKLKRYEEAIGQCSLVLGEDENN  266 (365)
Q Consensus       187 ~~G~~~~~~~~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~kl~~~~~A~~~~~~aL~~~p~n  266 (365)
                      ..|..++..|++++|+..|++++...|.+..                 ++.++|.+|+++|++++|+.+++++++++|++
T Consensus       274 ~~G~~~~~~g~~~~A~~~l~~aL~~~P~~~~-----------------a~~~Lg~~~~~~g~~~eA~~~l~~Al~~~p~~  336 (1157)
T PRK11447        274 AQGLAAVDSGQGGKAIPELQQAVRANPKDSE-----------------ALGALGQAYSQQGDRARAVAQFEKALALDPHS  336 (1157)
T ss_pred             HHHHHHHHCCCHHHHHHHHHHHHHhCCCCHH-----------------HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCc
Confidence            4588999999999999999999999998643                 48999999999999999999999999999987


Q ss_pred             HH--------------HHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCC
Q 017811          267 VK--------------ALFRRGKARAELGQTDAAREDFLKAGKFAPEDKSIARELRLLAEHEKAVYKKQKEIYKGIFGPR  332 (365)
Q Consensus       267 ~k--------------a~~~~g~a~~~l~~~~~A~~~l~~al~l~P~n~~~~~~l~~l~~~~~~~~~~~k~~y~kmf~~~  332 (365)
                      ..              .+..+|.++...|++++|+..|++++.++|++..+...+..+....++..++.+ .|.+++...
T Consensus       337 ~~~~~~~~ll~~~~~~~~~~~g~~~~~~g~~~eA~~~~~~Al~~~P~~~~a~~~Lg~~~~~~g~~~eA~~-~y~~aL~~~  415 (1157)
T PRK11447        337 SNRDKWESLLKVNRYWLLIQQGDAALKANNLAQAERLYQQARQVDNTDSYAVLGLGDVAMARKDYAAAER-YYQQALRMD  415 (1157)
T ss_pred             cchhHHHHHHHhhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHH-HHHHHHHhC
Confidence            53              234568899999999999999999999999999999999999888877766654 499999888


Q ss_pred             CCccc
Q 017811          333 PEPKQ  337 (365)
Q Consensus       333 ~~~~~  337 (365)
                      |....
T Consensus       416 p~~~~  420 (1157)
T PRK11447        416 PGNTN  420 (1157)
T ss_pred             CCCHH
Confidence            76543

>PLN02789 farnesyltranstransferase

Probab=98.96  E-value=1.4e-08  Score=95.40  Aligned_cols=128  Identities=13%  Similarity=0.075  Sum_probs=113.4

Q ss_pred             hhhhhhHHHHHHHHHHHHHhhccchhhhhhhhHHHHHHHhhchhhhHHHHHHHHhc-CHHHHHHHHHHHHhCCCCCHHHH
Q 017811          192 LFKEEKLEEAMQQYEMAIAYMGDDFMFQLFGKYRDMALAVKNPCHLNMAACLLKLK-RYEEAIGQCSLVLGEDENNVKAL  270 (365)
Q Consensus       192 ~~~~~~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~kl~-~~~~A~~~~~~aL~~~p~n~ka~  270 (365)
                      +...+++.+|+..+.++|.++|.++.                 ++.+++.++.+++ .+.+++..++++++.+|+|..+|
T Consensus        47 l~~~e~serAL~lt~~aI~lnP~~yt-----------------aW~~R~~iL~~L~~~l~eeL~~~~~~i~~npknyqaW  109 (320)
T PLN02789         47 YASDERSPRALDLTADVIRLNPGNYT-----------------VWHFRRLCLEALDADLEEELDFAEDVAEDNPKNYQIW  109 (320)
T ss_pred             HHcCCCCHHHHHHHHHHHHHCchhHH-----------------HHHHHHHHHHHcchhHHHHHHHHHHHHHHCCcchHHh
Confidence            55678899999999999999999754                 4999999999999 68999999999999999999999


Q ss_pred             HHHHHHHHHcCCH--HHHHHHHHHHHhhCCCcHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCCCccc
Q 017811          271 FRRGKARAELGQT--DAAREDFLKAGKFAPEDKSIARELRLLAEHEKAVYKKQKEIYKGIFGPRPEPKQ  337 (365)
Q Consensus       271 ~~~g~a~~~l~~~--~~A~~~l~~al~l~P~n~~~~~~l~~l~~~~~~~~~~~k~~y~kmf~~~~~~~~  337 (365)
                      +.|+.++..+++.  ++++..+.++++++|+|-.+....+.+....+.+.+ +-..+.++++.++.+..
T Consensus       110 ~~R~~~l~~l~~~~~~~el~~~~kal~~dpkNy~AW~~R~w~l~~l~~~~e-eL~~~~~~I~~d~~N~s  177 (320)
T PLN02789        110 HHRRWLAEKLGPDAANKELEFTRKILSLDAKNYHAWSHRQWVLRTLGGWED-ELEYCHQLLEEDVRNNS  177 (320)
T ss_pred             HHHHHHHHHcCchhhHHHHHHHHHHHHhCcccHHHHHHHHHHHHHhhhHHH-HHHHHHHHHHHCCCchh
Confidence            9999999999984  788999999999999999999999999888877664 56668899887776543

>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional

Probab=98.96  E-value=7.3e-09  Score=99.07  Aligned_cols=114  Identities=13%  Similarity=0.022  Sum_probs=102.3

Q ss_pred             hhHHHHHHHHhcCHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHHH
Q 017811          236 HLNMAACLLKLKRYEEAIGQCSLVLGEDENNVKALFRRGKARAELGQTDAAREDFLKAGKFAPEDKSIARELRLLAEHEK  315 (365)
Q Consensus       236 ~~nla~~~~kl~~~~~A~~~~~~aL~~~p~n~ka~~~~g~a~~~l~~~~~A~~~l~~al~l~P~n~~~~~~l~~l~~~~~  315 (365)
                      +...|...+..++|.+|+..|+++|+++|++..+|+.+|.+|..+|+|++|+.++++++.++|++..++..++.+...++
T Consensus         5 l~~~a~~a~~~~~~~~Ai~~~~~Al~~~P~~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l~P~~~~a~~~lg~~~~~lg   84 (356)
T PLN03088          5 LEDKAKEAFVDDDFALAVDLYTQAIDLDPNNAELYADRAQANIKLGNFTEAVADANKAIELDPSLAKAYLRKGTACMKLE   84 (356)
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHhC
Confidence            56778999999999999999999999999999999999999999999999999999999999999999999999988888


Q ss_pred             HHHHHHHHHHhcccCCCCCccccchhHHHHHHHHH
Q 017811          316 AVYKKQKEIYKGIFGPRPEPKQKKNWLIIFWQLLV  350 (365)
Q Consensus       316 ~~~~~~k~~y~kmf~~~~~~~~~~~~~~~~~~~~~  350 (365)
                      ++.++... |.+.+...|+......|...+-..+.
T Consensus        85 ~~~eA~~~-~~~al~l~P~~~~~~~~l~~~~~kl~  118 (356)
T PLN03088         85 EYQTAKAA-LEKGASLAPGDSRFTKLIKECDEKIA  118 (356)
T ss_pred             CHHHHHHH-HHHHHHhCCCCHHHHHHHHHHHHHHH
Confidence            88766655 99999999988877777766655553

>KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]

Probab=98.95  E-value=5.9e-09  Score=100.58  Aligned_cols=80  Identities=29%  Similarity=0.316  Sum_probs=75.1

Q ss_pred             chhhhHHHHHHHHhcCHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHH
Q 017811          233 NPCHLNMAACLLKLKRYEEAIGQCSLVLGEDENNVKALFRRGKARAELGQTDAAREDFLKAGKFAPEDKSIARELRLLAE  312 (365)
Q Consensus       233 ~~~~~nla~~~~kl~~~~~A~~~~~~aL~~~p~n~ka~~~~g~a~~~l~~~~~A~~~l~~al~l~P~n~~~~~~l~~l~~  312 (365)
                      .+.+.|||.++-+++.|.+||.+++++|.+.|.++.++-..|.+|..+|+++.|+..|.++|-++|+|..+...|+.+..
T Consensus       455 ~p~~~NLGH~~Rkl~~~~eAI~~~q~aL~l~~k~~~~~asig~iy~llgnld~Aid~fhKaL~l~p~n~~~~~lL~~aie  534 (611)
T KOG1173|consen  455 EPTLNNLGHAYRKLNKYEEAIDYYQKALLLSPKDASTHASIGYIYHLLGNLDKAIDHFHKALALKPDNIFISELLKLAIE  534 (611)
T ss_pred             hHHHHhHHHHHHHHhhHHHHHHHHHHHHHcCCCchhHHHHHHHHHHHhcChHHHHHHHHHHHhcCCccHHHHHHHHHHHH
Confidence            44589999999999999999999999999999999999999999999999999999999999999999988888886544

>PRK10866 outer membrane biogenesis protein BamD; Provisional

Probab=98.95  E-value=2.8e-08  Score=89.87  Aligned_cols=132  Identities=15%  Similarity=0.121  Sum_probs=107.8

Q ss_pred             HHHhhhhhhhhhhhhhHHHHHHHHHHHHHhhccchhhhhhhhHHHHHHHhhchhhhHHHHHHHHhcCHHHHHHHHHHHHh
Q 017811          182 ADRRKMDGNALFKEEKLEEAMQQYEMAIAYMGDDFMFQLFGKYRDMALAVKNPCHLNMAACLLKLKRYEEAIGQCSLVLG  261 (365)
Q Consensus       182 a~~~k~~G~~~~~~~~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~kl~~~~~A~~~~~~aL~  261 (365)
                      +..+...|..++..|+|.+|+..|++++...|....              ...+.+++|.+|+++++|.+|+..+++.++
T Consensus        32 ~~~~Y~~A~~~~~~g~y~~Ai~~f~~l~~~yP~s~~--------------a~~a~l~la~ayy~~~~y~~A~~~~e~fi~   97 (243)
T PRK10866         32 PSEIYATAQQKLQDGNWKQAITQLEALDNRYPFGPY--------------SQQVQLDLIYAYYKNADLPLAQAAIDRFIR   97 (243)
T ss_pred             HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCChH--------------HHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Confidence            345678899999999999999999999999997532              234578999999999999999999999999


Q ss_pred             CCCCCH---HHHHHHHHHHHHcCC------------------HHHHHHHHHHHHhhCCCc---HHHHHHHHHHHHHHHHH
Q 017811          262 EDENNV---KALFRRGKARAELGQ------------------TDAAREDFLKAGKFAPED---KSIARELRLLAEHEKAV  317 (365)
Q Consensus       262 ~~p~n~---ka~~~~g~a~~~l~~------------------~~~A~~~l~~al~l~P~n---~~~~~~l~~l~~~~~~~  317 (365)
                      .+|+++   .|+|.+|.++..++.                  ..+|+..|+..++..|+.   +++...+..|+.++.++
T Consensus        98 ~~P~~~~~~~a~Y~~g~~~~~~~~~~~~~~~~~~~~~rD~~~~~~A~~~~~~li~~yP~S~ya~~A~~rl~~l~~~la~~  177 (243)
T PRK10866         98 LNPTHPNIDYVLYMRGLTNMALDDSALQGFFGVDRSDRDPQHARAAFRDFSKLVRGYPNSQYTTDATKRLVFLKDRLAKY  177 (243)
T ss_pred             hCcCCCchHHHHHHHHHhhhhcchhhhhhccCCCccccCHHHHHHHHHHHHHHHHHCcCChhHHHHHHHHHHHHHHHHHH
Confidence            999875   589999999866651                  257889999999999986   45666677777777776


Q ss_pred             HHHHHHHHhc
Q 017811          318 YKKQKEIYKG  327 (365)
Q Consensus       318 ~~~~k~~y~k  327 (365)
                      +-...+.|.+
T Consensus       178 e~~ia~~Y~~  187 (243)
T PRK10866        178 ELSVAEYYTK  187 (243)
T ss_pred             HHHHHHHHHH
Confidence            6666665554

>PF13371 TPR_9: Tetratricopeptide repeat

Probab=98.93  E-value=5.3e-09  Score=76.03  Aligned_cols=71  Identities=23%  Similarity=0.338  Sum_probs=65.7

Q ss_pred             HHHHHHHhcCHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCcHHHHHHHHH
Q 017811          239 MAACLLKLKRYEEAIGQCSLVLGEDENNVKALFRRGKARAELGQTDAAREDFLKAGKFAPEDKSIARELRL  309 (365)
Q Consensus       239 la~~~~kl~~~~~A~~~~~~aL~~~p~n~ka~~~~g~a~~~l~~~~~A~~~l~~al~l~P~n~~~~~~l~~  309 (365)
                      |...|++.++|++|+.+++.++.++|+++.+++.+|.++..+|+|.+|+.+|.++++++|++..+......
T Consensus         1 l~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~~~p~~~~~~~~~a~   71 (73)
T PF13371_consen    1 LKQIYLQQEDYEEALEVLERALELDPDDPELWLQRARCLFQLGRYEEALEDLERALELSPDDPDARALRAM   71 (73)
T ss_pred             CHHHHHhCCCHHHHHHHHHHHHHhCcccchhhHHHHHHHHHhccHHHHHHHHHHHHHHCCCcHHHHHHHHh
Confidence            35688999999999999999999999999999999999999999999999999999999998887765554

>KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]

Probab=98.93  E-value=1.4e-08  Score=94.69  Aligned_cols=157  Identities=14%  Similarity=0.070  Sum_probs=127.6

Q ss_pred             HHHHHhhhhhhhhhhhhhHHHHHHHHHHHHHhhccchhhhhhhhHHHHHHHhhchhhhHHHHHHHHhcCHHHHHHHHHHH
Q 017811          180 GAADRRKMDGNALFKEEKLEEAMQQYEMAIAYMGDDFMFQLFGKYRDMALAVKNPCHLNMAACLLKLKRYEEAIGQCSLV  259 (365)
Q Consensus       180 ~~a~~~k~~G~~~~~~~~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~kl~~~~~A~~~~~~a  259 (365)
                      ..+..++.+|..++-..+.+.|+.+|+++|.+.|+.......   .-....  ....-+.|.-.++.|+|..|...|+.+
T Consensus       201 ~n~~al~vrg~~~yy~~~~~ka~~hf~qal~ldpdh~~sk~~---~~~~k~--le~~k~~gN~~fk~G~y~~A~E~Ytea  275 (486)
T KOG0550|consen  201 TNAEALYVRGLCLYYNDNADKAINHFQQALRLDPDHQKSKSA---SMMPKK--LEVKKERGNDAFKNGNYRKAYECYTEA  275 (486)
T ss_pred             chhHHHHhcccccccccchHHHHHHHhhhhccChhhhhHHhH---hhhHHH--HHHHHhhhhhHhhccchhHHHHHHHHh
Confidence            456778889999999999999999999999999986543211   111111  123667888899999999999999999


Q ss_pred             HhCCCCC----HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCCCc
Q 017811          260 LGEDENN----VKALFRRGKARAELGQTDAAREDFLKAGKFAPEDKSIARELRLLAEHEKAVYKKQKEIYKGIFGPRPEP  335 (365)
Q Consensus       260 L~~~p~n----~ka~~~~g~a~~~l~~~~~A~~~l~~al~l~P~n~~~~~~l~~l~~~~~~~~~~~k~~y~kmf~~~~~~  335 (365)
                      |.+||+|    ++.|++||.+...+|+..+|+.+...|+.|+|.-..+....+.|+..+.++..+.+. |.+..+...+.
T Consensus       276 l~idP~n~~~naklY~nra~v~~rLgrl~eaisdc~~Al~iD~syikall~ra~c~l~le~~e~AV~d-~~~a~q~~~s~  354 (486)
T KOG0550|consen  276 LNIDPSNKKTNAKLYGNRALVNIRLGRLREAISDCNEALKIDSSYIKALLRRANCHLALEKWEEAVED-YEKAMQLEKDC  354 (486)
T ss_pred             hcCCccccchhHHHHHHhHhhhcccCCchhhhhhhhhhhhcCHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHhhcccc
Confidence            9999986    568999999999999999999999999999999888888888998888888776655 88887777765


Q ss_pred             cccchhH
Q 017811          336 KQKKNWL  342 (365)
Q Consensus       336 ~~~~~~~  342 (365)
                      ..++.|+
T Consensus       355 e~r~~l~  361 (486)
T KOG0550|consen  355 EIRRTLR  361 (486)
T ss_pred             chHHHHH
Confidence            5554443

>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]

Probab=98.93  E-value=1.8e-08  Score=87.59  Aligned_cols=118  Identities=16%  Similarity=0.141  Sum_probs=105.0

Q ss_pred             hhchhhhHHHHHHHHhcCHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCcHHHHHHHHHH
Q 017811          231 VKNPCHLNMAACLLKLKRYEEAIGQCSLVLGEDENNVKALFRRGKARAELGQTDAAREDFLKAGKFAPEDKSIARELRLL  310 (365)
Q Consensus       231 ~~~~~~~nla~~~~kl~~~~~A~~~~~~aL~~~p~n~ka~~~~g~a~~~l~~~~~A~~~l~~al~l~P~n~~~~~~l~~l  310 (365)
                      ....++..||.-|+..|++..|...+++||+.||++..+|.-+|.+|..+|+.+.|.+.|++|+.++|+|.++....+-.
T Consensus        33 ~aa~arlqLal~YL~~gd~~~A~~nlekAL~~DPs~~~a~~~~A~~Yq~~Ge~~~A~e~YrkAlsl~p~~GdVLNNYG~F  112 (250)
T COG3063          33 EAAKARLQLALGYLQQGDYAQAKKNLEKALEHDPSYYLAHLVRAHYYQKLGENDLADESYRKALSLAPNNGDVLNNYGAF  112 (250)
T ss_pred             HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCChhhHHHHHHHHHhcCCCccchhhhhhHH
Confidence            34567899999999999999999999999999999999999999999999999999999999999999999999999988


Q ss_pred             HHHHHHHHHHHHHHHhcccCCCCCccccchhHHHHHHHH
Q 017811          311 AEHEKAVYKKQKEIYKGIFGPRPEPKQKKNWLIIFWQLL  349 (365)
Q Consensus       311 ~~~~~~~~~~~k~~y~kmf~~~~~~~~~~~~~~~~~~~~  349 (365)
                      ...+++..+.. ++|.+.+..+-=..+...|..+.||.+
T Consensus       113 LC~qg~~~eA~-q~F~~Al~~P~Y~~~s~t~eN~G~Cal  150 (250)
T COG3063         113 LCAQGRPEEAM-QQFERALADPAYGEPSDTLENLGLCAL  150 (250)
T ss_pred             HHhCCChHHHH-HHHHHHHhCCCCCCcchhhhhhHHHHh
Confidence            77777665554 558888877777777788888888888

>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B

Probab=98.92  E-value=3.9e-09  Score=97.60  Aligned_cols=131  Identities=18%  Similarity=0.116  Sum_probs=98.1

Q ss_pred             HHHHhhhhhhhhhhhhhHHHHHHHHHHHHHhhccchhhhhhhhHHHHHHHhhchhhhHHHHHHHHhcCHHHHHHHHHHHH
Q 017811          181 AADRRKMDGNALFKEEKLEEAMQQYEMAIAYMGDDFMFQLFGKYRDMALAVKNPCHLNMAACLLKLKRYEEAIGQCSLVL  260 (365)
Q Consensus       181 ~a~~~k~~G~~~~~~~~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~kl~~~~~A~~~~~~aL  260 (365)
                      .+..+...|..+.+.|++++|+..|++|++..|++..                 +..+++.+++..|+++++...+....
T Consensus       145 ~~~~~~~~a~~~~~~G~~~~A~~~~~~al~~~P~~~~-----------------~~~~l~~~li~~~~~~~~~~~l~~~~  207 (280)
T PF13429_consen  145 SARFWLALAEIYEQLGDPDKALRDYRKALELDPDDPD-----------------ARNALAWLLIDMGDYDEAREALKRLL  207 (280)
T ss_dssp             -HHHHHHHHHHHHHCCHHHHHHHHHHHHHHH-TT-HH-----------------HHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHH-----------------HHHHHHHHHHHCCChHHHHHHHHHHH
Confidence            3445677899999999999999999999999998754                 37788899999999999888888888


Q ss_pred             hCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHHHHHHHHHHHHHhccc
Q 017811          261 GEDENNVKALFRRGKARAELGQTDAAREDFLKAGKFAPEDKSIARELRLLAEHEKAVYKKQKEIYKGIF  329 (365)
Q Consensus       261 ~~~p~n~ka~~~~g~a~~~l~~~~~A~~~l~~al~l~P~n~~~~~~l~~l~~~~~~~~~~~k~~y~kmf  329 (365)
                      ...|.++..+..+|.++..+|++++|+..|++++..+|+|+.+...+..+....+...++.. ++++.+
T Consensus       208 ~~~~~~~~~~~~la~~~~~lg~~~~Al~~~~~~~~~~p~d~~~~~~~a~~l~~~g~~~~A~~-~~~~~~  275 (280)
T PF13429_consen  208 KAAPDDPDLWDALAAAYLQLGRYEEALEYLEKALKLNPDDPLWLLAYADALEQAGRKDEALR-LRRQAL  275 (280)
T ss_dssp             HH-HTSCCHCHHHHHHHHHHT-HHHHHHHHHHHHHHSTT-HHHHHHHHHHHT-----------------
T ss_pred             HHCcCHHHHHHHHHHHhccccccccccccccccccccccccccccccccccccccccccccc-cccccc
Confidence            87788888899999999999999999999999999999999999999998777766655443 344444

>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein

Probab=98.92  E-value=2.2e-08  Score=105.84  Aligned_cols=132  Identities=16%  Similarity=0.154  Sum_probs=88.6

Q ss_pred             HhhhhhhhhhhhhhHHHHHHHHHHHHHhhccchhhhhhhhHHHHHHHhhchhhhHHHHHHHHhcCHHHHHHHHHHHHhCC
Q 017811          184 RRKMDGNALFKEEKLEEAMQQYEMAIAYMGDDFMFQLFGKYRDMALAVKNPCHLNMAACLLKLKRYEEAIGQCSLVLGED  263 (365)
Q Consensus       184 ~~k~~G~~~~~~~~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~kl~~~~~A~~~~~~aL~~~  263 (365)
                      .+...|..++..|+|.+|+..|.+++...|.+.                  .+.+++.++.++|++++|+..+.++++.+
T Consensus       705 ~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~------------------~~~~l~~~~~~~g~~~~A~~~~~~~l~~~  766 (899)
T TIGR02917       705 GFELEGDLYLRQKDYPAAIQAYRKALKRAPSSQ------------------NAIKLHRALLASGNTAEAVKTLEAWLKTH  766 (899)
T ss_pred             HHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCch------------------HHHHHHHHHHHCCCHHHHHHHHHHHHHhC
Confidence            345578888899999999999999998877641                  24566666666666666666666666666


Q ss_pred             CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCCCc
Q 017811          264 ENNVKALFRRGKARAELGQTDAAREDFLKAGKFAPEDKSIARELRLLAEHEKAVYKKQKEIYKGIFGPRPEP  335 (365)
Q Consensus       264 p~n~ka~~~~g~a~~~l~~~~~A~~~l~~al~l~P~n~~~~~~l~~l~~~~~~~~~~~k~~y~kmf~~~~~~  335 (365)
                      |+++.+++.+|.++..+|++++|+..|++++..+|++..+...+..+....++  .+...++.+++...|+.
T Consensus       767 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~--~~A~~~~~~~~~~~~~~  836 (899)
T TIGR02917       767 PNDAVLRTALAELYLAQKDYDKAIKHYRTVVKKAPDNAVVLNNLAWLYLELKD--PRALEYAEKALKLAPNI  836 (899)
T ss_pred             CCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCc--HHHHHHHHHHHhhCCCC
Confidence            66666666666666666666666666666666666666666666655554444  23555566665555443

This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.

>PF13512 TPR_18: Tetratricopeptide repeat

Probab=98.88  E-value=2.3e-08  Score=81.38  Aligned_cols=111  Identities=20%  Similarity=0.194  Sum_probs=96.8

Q ss_pred             HHHhhhhhhhhhhhhhHHHHHHHHHHHHHhhccchhhhhhhhHHHHHHHhhchhhhHHHHHHHHhcCHHHHHHHHHHHHh
Q 017811          182 ADRRKMDGNALFKEEKLEEAMQQYEMAIAYMGDDFMFQLFGKYRDMALAVKNPCHLNMAACLLKLKRYEEAIGQCSLVLG  261 (365)
Q Consensus       182 a~~~k~~G~~~~~~~~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~kl~~~~~A~~~~~~aL~  261 (365)
                      +..+...|...++.|+|..|+..++......|.....              ..+.+.|+-+|++.++|.+|+..+++-|+
T Consensus        10 ~~~ly~~a~~~l~~~~Y~~A~~~le~L~~ryP~g~ya--------------~qAqL~l~yayy~~~~y~~A~a~~~rFir   75 (142)
T PF13512_consen   10 PQELYQEAQEALQKGNYEEAIKQLEALDTRYPFGEYA--------------EQAQLDLAYAYYKQGDYEEAIAAYDRFIR   75 (142)
T ss_pred             HHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCccc--------------HHHHHHHHHHHHHccCHHHHHHHHHHHHH
Confidence            3567788999999999999999999999888875332              34688999999999999999999999999


Q ss_pred             CCCCCHH---HHHHHHHHHHHcCC---------------HHHHHHHHHHHHhhCCCcHHHHHH
Q 017811          262 EDENNVK---ALFRRGKARAELGQ---------------TDAAREDFLKAGKFAPEDKSIARE  306 (365)
Q Consensus       262 ~~p~n~k---a~~~~g~a~~~l~~---------------~~~A~~~l~~al~l~P~n~~~~~~  306 (365)
                      ++|.+++   |+|.+|.+++.+..               ...|..+|+..+...|++.-+...
T Consensus        76 LhP~hp~vdYa~Y~~gL~~~~~~~~~~~~~~~~drD~~~~~~A~~~f~~lv~~yP~S~ya~dA  138 (142)
T PF13512_consen   76 LHPTHPNVDYAYYMRGLSYYEQDEGSLQSFFRSDRDPTPARQAFRDFEQLVRRYPNSEYAADA  138 (142)
T ss_pred             hCCCCCCccHHHHHHHHHHHHHhhhHHhhhcccccCcHHHHHHHHHHHHHHHHCcCChhHHHH
Confidence            9999875   99999999999987               889999999999999998655443

>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A

Probab=98.88  E-value=6.2e-09  Score=74.54  Aligned_cols=68  Identities=26%  Similarity=0.276  Sum_probs=62.3

Q ss_pred             HHHhcCHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCcHHHHHHHHHH
Q 017811          243 LLKLKRYEEAIGQCSLVLGEDENNVKALFRRGKARAELGQTDAAREDFLKAGKFAPEDKSIARELRLL  310 (365)
Q Consensus       243 ~~kl~~~~~A~~~~~~aL~~~p~n~ka~~~~g~a~~~l~~~~~A~~~l~~al~l~P~n~~~~~~l~~l  310 (365)
                      +++.|+|++|+..+++++..+|+|..+++.+|.+|+..|++++|...+.+++..+|+++.+...+..|
T Consensus         1 ll~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~l~a~i   68 (68)
T PF14559_consen    1 LLKQGDYDEAIELLEKALQRNPDNPEARLLLAQCYLKQGQYDEAEELLERLLKQDPDNPEYQQLLAQI   68 (68)
T ss_dssp             HHHTTHHHHHHHHHHHHHHHTTTSHHHHHHHHHHHHHTT-HHHHHHHHHCCHGGGTTHHHHHHHHHHH
T ss_pred             ChhccCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCHHHHHHHHhcC
Confidence            36789999999999999999999999999999999999999999999999999999998888776643

...

>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO

Probab=98.88  E-value=4e-08  Score=88.33  Aligned_cols=131  Identities=12%  Similarity=-0.053  Sum_probs=107.4

Q ss_pred             HHhhhhhhhhhhhhhHHHHHHHHHHHHHhhccchhhhhhhhHHHHHHHhhchhhhHHHHHHHHh--------cCHHHHHH
Q 017811          183 DRRKMDGNALFKEEKLEEAMQQYEMAIAYMGDDFMFQLFGKYRDMALAVKNPCHLNMAACLLKL--------KRYEEAIG  254 (365)
Q Consensus       183 ~~~k~~G~~~~~~~~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~kl--------~~~~~A~~  254 (365)
                      ..+...|..++..|+|.+|+..|.++++..|++...              ..+++++|.|+..+        +++++|+.
T Consensus        71 ~a~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~--------------~~a~~~~g~~~~~~~~~~~~~~~~~~~A~~  136 (235)
T TIGR03302        71 QAQLDLAYAYYKSGDYAEAIAAADRFIRLHPNHPDA--------------DYAYYLRGLSNYNQIDRVDRDQTAAREAFE  136 (235)
T ss_pred             HHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCch--------------HHHHHHHHHHHHHhcccccCCHHHHHHHHH
Confidence            346778999999999999999999999999976432              12478899999887        89999999


Q ss_pred             HHHHHHhCCCCCHHHH-----------------HHHHHHHHHcCCHHHHHHHHHHHHhhCCCc---HHHHHHHHHHHHHH
Q 017811          255 QCSLVLGEDENNVKAL-----------------FRRGKARAELGQTDAAREDFLKAGKFAPED---KSIARELRLLAEHE  314 (365)
Q Consensus       255 ~~~~aL~~~p~n~ka~-----------------~~~g~a~~~l~~~~~A~~~l~~al~l~P~n---~~~~~~l~~l~~~~  314 (365)
                      .+++++..+|++..++                 +.+|..++..|++.+|+..|++++...|++   ..++..+..+....
T Consensus       137 ~~~~~~~~~p~~~~~~~a~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~a~~~l~~~~~~l  216 (235)
T TIGR03302       137 AFQELIRRYPNSEYAPDAKKRMDYLRNRLAGKELYVARFYLKRGAYVAAINRFETVVENYPDTPATEEALARLVEAYLKL  216 (235)
T ss_pred             HHHHHHHHCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHCCCCcchHHHHHHHHHHHHHc
Confidence            9999999999986542                 467889999999999999999999998765   46777888888877


Q ss_pred             HHHHHHHHHHHhcc
Q 017811          315 KAVYKKQKEIYKGI  328 (365)
Q Consensus       315 ~~~~~~~k~~y~km  328 (365)
                      ++..+... .+..+
T Consensus       217 g~~~~A~~-~~~~l  229 (235)
T TIGR03302       217 GLKDLAQD-AAAVL  229 (235)
T ss_pred             CCHHHHHH-HHHHH
Confidence            77765554 34433

Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).

>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A

Probab=98.87  E-value=5.9e-08  Score=85.44  Aligned_cols=133  Identities=20%  Similarity=0.145  Sum_probs=103.6

Q ss_pred             HHHHhhhhhhhhhhhhhHHHHHHHHHHHHHhhccchhhhhhhhHHHHHHHhhchhhhHHHHHHHHhcCHHHHHHHHHHHH
Q 017811          181 AADRRKMDGNALFKEEKLEEAMQQYEMAIAYMGDDFMFQLFGKYRDMALAVKNPCHLNMAACLLKLKRYEEAIGQCSLVL  260 (365)
Q Consensus       181 ~a~~~k~~G~~~~~~~~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~kl~~~~~A~~~~~~aL  260 (365)
                      .+..+...|..++..|+|.+|+..|++.+...|.....              ..+.+.+|.++++.|+|..|+..++..+
T Consensus         4 ~~~~lY~~a~~~~~~g~y~~Ai~~f~~l~~~~P~s~~a--------------~~A~l~la~a~y~~~~y~~A~~~~~~fi   69 (203)
T PF13525_consen    4 TAEALYQKALEALQQGDYEEAIKLFEKLIDRYPNSPYA--------------PQAQLMLAYAYYKQGDYEEAIAAYERFI   69 (203)
T ss_dssp             -HHHHHHHHHHHHHCT-HHHHHHHHHHHHHH-TTSTTH--------------HHHHHHHHHHHHHTT-HHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCChHH--------------HHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence            35678899999999999999999999999999875432              3468999999999999999999999999


Q ss_pred             hCCCCCH---HHHHHHHHHHHHcCC-----------HHHHHHHHHHHHhhCCCc---HHHHHHHHHHHHHHHHHHHHHHH
Q 017811          261 GEDENNV---KALFRRGKARAELGQ-----------TDAAREDFLKAGKFAPED---KSIARELRLLAEHEKAVYKKQKE  323 (365)
Q Consensus       261 ~~~p~n~---ka~~~~g~a~~~l~~-----------~~~A~~~l~~al~l~P~n---~~~~~~l~~l~~~~~~~~~~~k~  323 (365)
                      ...|+++   .|+|.+|.+++.+..           ..+|+..|+..+...|+.   ..+...+..|..++.+++-...+
T Consensus        70 ~~yP~~~~~~~A~Y~~g~~~~~~~~~~~~~~~D~~~~~~A~~~~~~li~~yP~S~y~~~A~~~l~~l~~~la~~e~~ia~  149 (203)
T PF13525_consen   70 KLYPNSPKADYALYMLGLSYYKQIPGILRSDRDQTSTRKAIEEFEELIKRYPNSEYAEEAKKRLAELRNRLAEHELYIAR  149 (203)
T ss_dssp             HH-TT-TTHHHHHHHHHHHHHHHHHHHH-TT---HHHHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHCCCCcchhhHHHHHHHHHHHhCccchhcccChHHHHHHHHHHHHHHHHCcCchHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            9999875   599999999877643           358999999999999997   45666677777776666655555


Q ss_pred             HHhc
Q 017811          324 IYKG  327 (365)
Q Consensus       324 ~y~k  327 (365)
                      .|.+
T Consensus       150 ~Y~~  153 (203)
T PF13525_consen  150 FYYK  153 (203)
T ss_dssp             HHHC
T ss_pred             HHHH
Confidence            5544

>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C

Probab=98.87  E-value=4.6e-08  Score=72.66  Aligned_cols=97  Identities=25%  Similarity=0.283  Sum_probs=84.4

Q ss_pred             hhhHHHHHHHHhcCHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHH
Q 017811          235 CHLNMAACLLKLKRYEEAIGQCSLVLGEDENNVKALFRRGKARAELGQTDAAREDFLKAGKFAPEDKSIARELRLLAEHE  314 (365)
Q Consensus       235 ~~~nla~~~~kl~~~~~A~~~~~~aL~~~p~n~ka~~~~g~a~~~l~~~~~A~~~l~~al~l~P~n~~~~~~l~~l~~~~  314 (365)
                      +++++|.++...|++.+|+..+.+++...|.+..+++.+|.++...+++++|+..|++++.+.|.+..+...+..+....
T Consensus         2 ~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~   81 (100)
T cd00189           2 ALLNLGNLYYKLGDYDEALEYYEKALELDPDNADAYYNLAAAYYKLGKYEEALEDYEKALELDPDNAKAYYNLGLAYYKL   81 (100)
T ss_pred             HHHHHHHHHHHHhcHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcchhHHHHHHHHHHHH
Confidence            48899999999999999999999999999999999999999999999999999999999999999998888888887777


Q ss_pred             HHHHHHHHHHHhcccCCC
Q 017811          315 KAVYKKQKEIYKGIFGPR  332 (365)
Q Consensus       315 ~~~~~~~k~~y~kmf~~~  332 (365)
                      ++..... ..+...+...
T Consensus        82 ~~~~~a~-~~~~~~~~~~   98 (100)
T cd00189          82 GKYEEAL-EAYEKALELD   98 (100)
T ss_pred             HhHHHHH-HHHHHHHccC
Confidence            7655443 4455555433

>PRK10049 pgaA outer membrane protein PgaA; Provisional

Probab=98.87  E-value=3.5e-08  Score=103.76  Aligned_cols=113  Identities=11%  Similarity=0.089  Sum_probs=103.9

Q ss_pred             HHhhhhhhhhhhhhhHHHHHHHHHHHHHhhccchhhhhhhhHHHHHHHhhchhhhHHHHHHHHhcCHHHHHHHHHHHHhC
Q 017811          183 DRRKMDGNALFKEEKLEEAMQQYEMAIAYMGDDFMFQLFGKYRDMALAVKNPCHLNMAACLLKLKRYEEAIGQCSLVLGE  262 (365)
Q Consensus       183 ~~~k~~G~~~~~~~~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~kl~~~~~A~~~~~~aL~~  262 (365)
                      ..+...|..+...|++.+|+..|++++...|.+..                 ++.++|.++...|++++|+..+.+++..
T Consensus        50 ~~~~~lA~~~~~~g~~~~A~~~~~~al~~~P~~~~-----------------a~~~la~~l~~~g~~~eA~~~l~~~l~~  112 (765)
T PRK10049         50 RGYAAVAVAYRNLKQWQNSLTLWQKALSLEPQNDD-----------------YQRGLILTLADAGQYDEALVKAKQLVSG  112 (765)
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHH-----------------HHHHHHHHHHHCCCHHHHHHHHHHHHHh
Confidence            34777889999999999999999999999998744                 3789999999999999999999999999


Q ss_pred             CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHH
Q 017811          263 DENNVKALFRRGKARAELGQTDAAREDFLKAGKFAPEDKSIARELRLLAEH  313 (365)
Q Consensus       263 ~p~n~ka~~~~g~a~~~l~~~~~A~~~l~~al~l~P~n~~~~~~l~~l~~~  313 (365)
                      +|++.. ++.+|.++...|++++|+..|+++++++|++..+...+..+...
T Consensus       113 ~P~~~~-~~~la~~l~~~g~~~~Al~~l~~al~~~P~~~~~~~~la~~l~~  162 (765)
T PRK10049        113 APDKAN-LLALAYVYKRAGRHWDELRAMTQALPRAPQTQQYPTEYVQALRN  162 (765)
T ss_pred             CCCCHH-HHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Confidence            999999 99999999999999999999999999999999998888776553

>KOG2003 consensus TPR repeat-containing protein [General function prediction only]

Probab=98.85  E-value=1.7e-08  Score=95.09  Aligned_cols=141  Identities=20%  Similarity=0.207  Sum_probs=119.4

Q ss_pred             HhhhhhhhhhhhhhHHHHHHHHHHHHHhhccchhhhhhhhHHHHHHHhhchhhhHHHHHHHHhcCHHHHHHHHHHHHhCC
Q 017811          184 RRKMDGNALFKEEKLEEAMQQYEMAIAYMGDDFMFQLFGKYRDMALAVKNPCHLNMAACLLKLKRYEEAIGQCSLVLGED  263 (365)
Q Consensus       184 ~~k~~G~~~~~~~~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~kl~~~~~A~~~~~~aL~~~  263 (365)
                      .+-+.||..|..|+|++|...|+.||.-...+                 ..+++|+|..+-++|+.++|+.+|-+.-.+-
T Consensus       492 a~~nkgn~~f~ngd~dka~~~ykeal~ndasc-----------------~ealfniglt~e~~~~ldeald~f~klh~il  554 (840)
T KOG2003|consen  492 ALTNKGNIAFANGDLDKAAEFYKEALNNDASC-----------------TEALFNIGLTAEALGNLDEALDCFLKLHAIL  554 (840)
T ss_pred             HhhcCCceeeecCcHHHHHHHHHHHHcCchHH-----------------HHHHHHhcccHHHhcCHHHHHHHHHHHHHHH
Confidence            45679999999999999999999999876554                 2359999999999999999999999987777


Q ss_pred             CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCCCccccchhH
Q 017811          264 ENNVKALFRRGKARAELGQTDAAREDFLKAGKFAPEDKSIARELRLLAEHEKAVYKKQKEIYKGIFGPRPEPKQKKNWL  342 (365)
Q Consensus       264 p~n~ka~~~~g~a~~~l~~~~~A~~~l~~al~l~P~n~~~~~~l~~l~~~~~~~~~~~k~~y~kmf~~~~~~~~~~~~~  342 (365)
                      -+|+.+++.++.+|..+.+...|+++|.++..+-|+++.+...|..++.+..+.-++....| .-+..-|-+....-|+
T Consensus       555 ~nn~evl~qianiye~led~aqaie~~~q~~slip~dp~ilskl~dlydqegdksqafq~~y-dsyryfp~nie~iewl  632 (840)
T KOG2003|consen  555 LNNAEVLVQIANIYELLEDPAQAIELLMQANSLIPNDPAILSKLADLYDQEGDKSQAFQCHY-DSYRYFPCNIETIEWL  632 (840)
T ss_pred             HhhHHHHHHHHHHHHHhhCHHHHHHHHHHhcccCCCCHHHHHHHHHHhhcccchhhhhhhhh-hcccccCcchHHHHHH
Confidence            78999999999999999999999999999999999999999999999988888777776644 3333335555444444

>PRK11788 tetratricopeptide repeat protein; Provisional

Probab=98.85  E-value=1.2e-07  Score=91.66  Aligned_cols=124  Identities=11%  Similarity=0.045  Sum_probs=71.6

Q ss_pred             HHHHHHHHhhhhhhhhhhhhhHHHHHHHHHHHHHhhccchhhhh--------hhhHHHH---HHH----------hhchh
Q 017811          177 ERIGAADRRKMDGNALFKEEKLEEAMQQYEMAIAYMGDDFMFQL--------FGKYRDM---ALA----------VKNPC  235 (365)
Q Consensus       177 e~~~~a~~~k~~G~~~~~~~~y~~A~~~y~~al~~~~~~~~~~~--------~~~~~~~---~~~----------~~~~~  235 (365)
                      +....+......|..+...|++++|+..|.+++...|.+...-.        .+...+.   ...          ....+
T Consensus        30 ~~~~~~~~~y~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~  109 (389)
T PRK11788         30 KESNRLSRDYFKGLNFLLNEQPDKAIDLFIEMLKVDPETVELHLALGNLFRRRGEVDRAIRIHQNLLSRPDLTREQRLLA  109 (389)
T ss_pred             hhhhhccHHHHHHHHHHhcCChHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcCcHHHHHHHHHHHhcCCCCCHHHHHHH
Confidence            33444555666777777888888888888888887776532100        0000000   000          01123


Q ss_pred             hhHHHHHHHHhcCHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCc
Q 017811          236 HLNMAACLLKLKRYEEAIGQCSLVLGEDENNVKALFRRGKARAELGQTDAAREDFLKAGKFAPED  300 (365)
Q Consensus       236 ~~nla~~~~kl~~~~~A~~~~~~aL~~~p~n~ka~~~~g~a~~~l~~~~~A~~~l~~al~l~P~n  300 (365)
                      +.++|.+|.+.|++++|+..+.++++.+|.+..++..++.++...|++++|+..+++++...|.+
T Consensus       110 ~~~La~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~  174 (389)
T PRK11788        110 LQELGQDYLKAGLLDRAEELFLQLVDEGDFAEGALQQLLEIYQQEKDWQKAIDVAERLEKLGGDS  174 (389)
T ss_pred             HHHHHHHHHHCCCHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHhchHHHHHHHHHHHHHhcCCc
Confidence            55666666666666666666666666666666666666666666666666666666666665544

>KOG1125 consensus TPR repeat-containing protein [General function prediction only]

Probab=98.84  E-value=2.9e-08  Score=96.13  Aligned_cols=157  Identities=11%  Similarity=0.113  Sum_probs=129.2

Q ss_pred             CCCHHHHHHHHHHhhhhhhhhhhhhhHHHHHHHHHHHHHhhccchhhhh--------h----------------------
Q 017811          172 DMTVEERIGAADRRKMDGNALFKEEKLEEAMQQYEMAIAYMGDDFMFQL--------F----------------------  221 (365)
Q Consensus       172 ~~~~~e~~~~a~~~k~~G~~~~~~~~y~~A~~~y~~al~~~~~~~~~~~--------~----------------------  221 (365)
                      +..+.+..+.++.|...|......++=..||..+++|+++.|.+...-.        .                      
T Consensus       309 EAAVkqdP~haeAW~~LG~~qaENE~E~~ai~AL~rcl~LdP~NleaLmaLAVSytNeg~q~~Al~~L~~Wi~~~p~y~~  388 (579)
T KOG1125|consen  309 EAAVKQDPQHAEAWQKLGITQAENENEQNAISALRRCLELDPTNLEALMALAVSYTNEGLQNQALKMLDKWIRNKPKYVH  388 (579)
T ss_pred             HHHHhhChHHHHHHHHhhhHhhhccchHHHHHHHHHHHhcCCccHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhCccchh
Confidence            3445567888999999999999999999999999999999987543100        0                      


Q ss_pred             ----------h------------hHHHHHHH--------hhchhhhHHHHHHHHhcCHHHHHHHHHHHHhCCCCCHHHHH
Q 017811          222 ----------G------------KYRDMALA--------VKNPCHLNMAACLLKLKRYEEAIGQCSLVLGEDENNVKALF  271 (365)
Q Consensus       222 ----------~------------~~~~~~~~--------~~~~~~~nla~~~~kl~~~~~A~~~~~~aL~~~p~n~ka~~  271 (365)
                                +            ...+.+.+        .-..++.-||..|.-.++|++|+++|+.||..+|+|...|.
T Consensus       389 l~~a~~~~~~~~~~s~~~~~~l~~i~~~fLeaa~~~~~~~DpdvQ~~LGVLy~ls~efdraiDcf~~AL~v~Pnd~~lWN  468 (579)
T KOG1125|consen  389 LVSAGENEDFENTKSFLDSSHLAHIQELFLEAARQLPTKIDPDVQSGLGVLYNLSGEFDRAVDCFEAALQVKPNDYLLWN  468 (579)
T ss_pred             ccccCccccccCCcCCCCHHHHHHHHHHHHHHHHhCCCCCChhHHhhhHHHHhcchHHHHHHHHHHHHHhcCCchHHHHH
Confidence                      0            00000000        11357788999999999999999999999999999999999


Q ss_pred             HHHHHHHHcCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Q 017811          272 RRGKARAELGQTDAAREDFLKAGKFAPEDKSIARELRLLAEHEKAVYKKQKEIYKGI  328 (365)
Q Consensus       272 ~~g~a~~~l~~~~~A~~~l~~al~l~P~n~~~~~~l~~l~~~~~~~~~~~k~~y~km  328 (365)
                      |+|-++..-.+.++|+..|.+||+|.|+...++..|+...--++.++++.+-...-+
T Consensus       469 RLGAtLAN~~~s~EAIsAY~rALqLqP~yVR~RyNlgIS~mNlG~ykEA~~hlL~AL  525 (579)
T KOG1125|consen  469 RLGATLANGNRSEEAISAYNRALQLQPGYVRVRYNLGISCMNLGAYKEAVKHLLEAL  525 (579)
T ss_pred             HhhHHhcCCcccHHHHHHHHHHHhcCCCeeeeehhhhhhhhhhhhHHHHHHHHHHHH
Confidence            999999999999999999999999999999999999999888999988877755543

>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism]

Probab=98.84  E-value=6.5e-08  Score=98.57  Aligned_cols=149  Identities=18%  Similarity=0.205  Sum_probs=116.9

Q ss_pred             hhhhhhhhhhhhhHHHHHHHHHHHHHhhccchhhhhhhhHHHHHHHhhchhhhHHHHHHHHhcCHHHHHHHHHHHHhCCC
Q 017811          185 RKMDGNALFKEEKLEEAMQQYEMAIAYMGDDFMFQLFGKYRDMALAVKNPCHLNMAACLLKLKRYEEAIGQCSLVLGEDE  264 (365)
Q Consensus       185 ~k~~G~~~~~~~~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~kl~~~~~A~~~~~~aL~~~p  264 (365)
                      +...++.+|-.|+|..+...+..|+.....              ..+.+..++++|.+|..+|+|++|..+|-+++..+|
T Consensus       273 l~~LAn~fyfK~dy~~v~~la~~ai~~t~~--------------~~~~aes~Y~~gRs~Ha~Gd~ekA~~yY~~s~k~~~  338 (1018)
T KOG2002|consen  273 LNHLANHFYFKKDYERVWHLAEHAIKNTEN--------------KSIKAESFYQLGRSYHAQGDFEKAFKYYMESLKADN  338 (1018)
T ss_pred             HHHHHHHHhhcccHHHHHHHHHHHHHhhhh--------------hHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHccCC
Confidence            334666777777777777777777765422              234456699999999999999999999999999999


Q ss_pred             CC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHHH---HHHHHHHHHHhcccCCCCCccccch
Q 017811          265 NN-VKALFRRGKARAELGQTDAAREDFLKAGKFAPEDKSIARELRLLAEHEK---AVYKKQKEIYKGIFGPRPEPKQKKN  340 (365)
Q Consensus       265 ~n-~ka~~~~g~a~~~l~~~~~A~~~l~~al~l~P~n~~~~~~l~~l~~~~~---~~~~~~k~~y~kmf~~~~~~~~~~~  340 (365)
                      +| +-+++.+|+.|+..|+++.|...|.++++..|++.+....|+.++....   ...++...+..+.+...+.  +..+
T Consensus       339 d~~~l~~~GlgQm~i~~~dle~s~~~fEkv~k~~p~~~etm~iLG~Lya~~~~~~~~~d~a~~~l~K~~~~~~~--d~~a  416 (1018)
T KOG2002|consen  339 DNFVLPLVGLGQMYIKRGDLEESKFCFEKVLKQLPNNYETMKILGCLYAHSAKKQEKRDKASNVLGKVLEQTPV--DSEA  416 (1018)
T ss_pred             CCccccccchhHHHHHhchHHHHHHHHHHHHHhCcchHHHHHHHHhHHHhhhhhhHHHHHHHHHHHHHHhcccc--cHHH
Confidence            99 8999999999999999999999999999999999999999999887662   3444556666676666643  3355


Q ss_pred             hHHHHHHHH
Q 017811          341 WLIIFWQLL  349 (365)
Q Consensus       341 ~~~~~~~~~  349 (365)
                      |..+..-|.
T Consensus       417 ~l~laql~e  425 (1018)
T KOG2002|consen  417 WLELAQLLE  425 (1018)
T ss_pred             HHHHHHHHH
Confidence            555554443

>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional

Probab=98.82  E-value=3.8e-08  Score=81.54  Aligned_cols=96  Identities=15%  Similarity=0.050  Sum_probs=87.2

Q ss_pred             hhhHHHHHHHHhcCHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHH
Q 017811          235 CHLNMAACLLKLKRYEEAIGQCSLVLGEDENNVKALFRRGKARAELGQTDAAREDFLKAGKFAPEDKSIARELRLLAEHE  314 (365)
Q Consensus       235 ~~~nla~~~~kl~~~~~A~~~~~~aL~~~p~n~ka~~~~g~a~~~l~~~~~A~~~l~~al~l~P~n~~~~~~l~~l~~~~  314 (365)
                      ..+.+|.-++..|++++|...|+.+..+||.|...||.+|.|+..+|+|.+|+..|.+|+.++|+|+.....++.|....
T Consensus        37 ~lY~~A~~ly~~G~l~~A~~~f~~L~~~Dp~~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~L~~ddp~~~~~ag~c~L~l  116 (157)
T PRK15363         37 TLYRYAMQLMEVKEFAGAARLFQLLTIYDAWSFDYWFRLGECCQAQKHWGEAIYAYGRAAQIKIDAPQAPWAAAECYLAC  116 (157)
T ss_pred             HHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHc
Confidence            47889999999999999999999999999999999999999999999999999999999999999999999999999888


Q ss_pred             HHHHHHHHHHHhcccCC
Q 017811          315 KAVYKKQKEIYKGIFGP  331 (365)
Q Consensus       315 ~~~~~~~k~~y~kmf~~  331 (365)
                      ++.....+. |+..+..
T Consensus       117 G~~~~A~~a-F~~Ai~~  132 (157)
T PRK15363        117 DNVCYAIKA-LKAVVRI  132 (157)
T ss_pred             CCHHHHHHH-HHHHHHH
Confidence            887766555 6655433

>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B

Probab=98.79  E-value=1.5e-08  Score=71.95  Aligned_cols=64  Identities=23%  Similarity=0.308  Sum_probs=57.7

Q ss_pred             hhhhhhhhhhhHHHHHHHHHHHHHhhccchhhhhhhhHHHHHHHhhchhhhHHHHHHHHhcCHHHHHHHHHHHHhCCCCC
Q 017811          187 MDGNALFKEEKLEEAMQQYEMAIAYMGDDFMFQLFGKYRDMALAVKNPCHLNMAACLLKLKRYEEAIGQCSLVLGEDENN  266 (365)
Q Consensus       187 ~~G~~~~~~~~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~kl~~~~~A~~~~~~aL~~~p~n  266 (365)
                      ..|..++..|+|++|+..|++++...|.+..                 +++.+|.|+..+|++++|+..++++++++|+|
T Consensus         2 ~~a~~~~~~g~~~~A~~~~~~~l~~~P~~~~-----------------a~~~lg~~~~~~g~~~~A~~~~~~a~~~~P~~   64 (65)
T PF13432_consen    2 ALARALYQQGDYDEAIAAFEQALKQDPDNPE-----------------AWYLLGRILYQQGRYDEALAYYERALELDPDN   64 (65)
T ss_dssp             HHHHHHHHCTHHHHHHHHHHHHHCCSTTHHH-----------------HHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT-
T ss_pred             hHHHHHHHcCCHHHHHHHHHHHHHHCCCCHH-----------------HHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCC
Confidence            5789999999999999999999999998644                 49999999999999999999999999999998


Q ss_pred             H
Q 017811          267 V  267 (365)
Q Consensus       267 ~  267 (365)
                      +
T Consensus        65 p   65 (65)
T PF13432_consen   65 P   65 (65)
T ss_dssp             H
T ss_pred             C
Confidence            5

>COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones]

Probab=98.79  E-value=7.8e-08  Score=87.11  Aligned_cols=117  Identities=21%  Similarity=0.178  Sum_probs=100.8

Q ss_pred             HHHHHHhhhhhhhhhhhhhHHHHHHHHHHHHHhhccchhhhhhhhHHHHHHHhhchhhhHHHHHHHHhc---CHHHHHHH
Q 017811          179 IGAADRRKMDGNALFKEEKLEEAMQQYEMAIAYMGDDFMFQLFGKYRDMALAVKNPCHLNMAACLLKLK---RYEEAIGQ  255 (365)
Q Consensus       179 ~~~a~~~k~~G~~~~~~~~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~kl~---~~~~A~~~  255 (365)
                      ...++.|.-.|..|+..|++..|...|.+|+++.|++...                 +.-+|.+++...   .-.++...
T Consensus       153 P~d~egW~~Lg~~ym~~~~~~~A~~AY~~A~rL~g~n~~~-----------------~~g~aeaL~~~a~~~~ta~a~~l  215 (287)
T COG4235         153 PGDAEGWDLLGRAYMALGRASDALLAYRNALRLAGDNPEI-----------------LLGLAEALYYQAGQQMTAKARAL  215 (287)
T ss_pred             CCCchhHHHHHHHHHHhcchhHHHHHHHHHHHhCCCCHHH-----------------HHHHHHHHHHhcCCcccHHHHHH
Confidence            3445567789999999999999999999999999998653                 667777776654   57789999


Q ss_pred             HHHHHhCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHH
Q 017811          256 CSLVLGEDENNVKALFRRGKARAELGQTDAAREDFLKAGKFAPEDKSIARELRLLAE  312 (365)
Q Consensus       256 ~~~aL~~~p~n~ka~~~~g~a~~~l~~~~~A~~~l~~al~l~P~n~~~~~~l~~l~~  312 (365)
                      ++++|.+||.|+.+++.+|..+++.|+|.+|...++..+.+.|.+..-+..+.....
T Consensus       216 l~~al~~D~~~iral~lLA~~afe~g~~~~A~~~Wq~lL~~lp~~~~rr~~ie~~ia  272 (287)
T COG4235         216 LRQALALDPANIRALSLLAFAAFEQGDYAEAAAAWQMLLDLLPADDPRRSLIERSIA  272 (287)
T ss_pred             HHHHHhcCCccHHHHHHHHHHHHHcccHHHHHHHHHHHHhcCCCCCchHHHHHHHHH
Confidence            999999999999999999999999999999999999999999988777766665433

>COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only]

Probab=98.78  E-value=9.7e-09  Score=88.28  Aligned_cols=134  Identities=22%  Similarity=0.114  Sum_probs=111.0

Q ss_pred             CCCCCcEEEEEEEEeeecCcccccCCCCCHHHHHHHHHHhhhhhhhhhhhhhHHHHHHHHHHHHHhhccchhhhhhhhHH
Q 017811          146 VSPMADLVYEVVLIGFDETKEGKARSDMTVEERIGAADRRKMDGNALFKEEKLEEAMQQYEMAIAYMGDDFMFQLFGKYR  225 (365)
Q Consensus       146 ip~~~~l~~~iel~~~~~~~~~~~~~~~~~~e~~~~a~~~k~~G~~~~~~~~y~~A~~~y~~al~~~~~~~~~~~~~~~~  225 (365)
                      +|-.+++.-+|.+..+...-.   ...++.++   .|.-+.++|+.|-..|-+..|...|.+++.+.|+.+.        
T Consensus        35 ~~~qp~lqqEV~iarlsqlL~---~~~l~~ee---RA~l~fERGvlYDSlGL~~LAR~DftQaLai~P~m~~--------  100 (297)
T COG4785          35 VPLQPTLQQEVILARMSQILA---SRALTDEE---RAQLLFERGVLYDSLGLRALARNDFSQALAIRPDMPE--------  100 (297)
T ss_pred             ccCCccHHHHHHHHHHHHHHH---hccCChHH---HHHHHHHhcchhhhhhHHHHHhhhhhhhhhcCCCcHH--------
Confidence            344444444444333332211   34555554   4788999999999999999999999999999998644        


Q ss_pred             HHHHHhhchhhhHHHHHHHHhcCHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCcHH
Q 017811          226 DMALAVKNPCHLNMAACLLKLKRYEEAIGQCSLVLGEDENNVKALFRRGKARAELGQTDAAREDFLKAGKFAPEDKS  302 (365)
Q Consensus       226 ~~~~~~~~~~~~nla~~~~kl~~~~~A~~~~~~aL~~~p~n~ka~~~~g~a~~~l~~~~~A~~~l~~al~l~P~n~~  302 (365)
                               +++-+|..+...|+|+.|.+.++.++++||.+.-|+.+||.+++--|+|.-|..++.+-..-||+|+-
T Consensus       101 ---------vfNyLG~Yl~~a~~fdaa~eaFds~~ELDp~y~Ya~lNRgi~~YY~gR~~LAq~d~~~fYQ~D~~DPf  168 (297)
T COG4785         101 ---------VFNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAHLNRGIALYYGGRYKLAQDDLLAFYQDDPNDPF  168 (297)
T ss_pred             ---------HHHHHHHHHHhcccchHHHHHhhhHhccCCcchHHHhccceeeeecCchHhhHHHHHHHHhcCCCChH
Confidence                     48899999999999999999999999999999999999999999999999999999999999999864

>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional

Probab=98.78  E-value=1.3e-07  Score=97.32  Aligned_cols=104  Identities=9%  Similarity=-0.042  Sum_probs=96.5

Q ss_pred             HHHHHHhhhhhhhhhhhhhHHHHHHHHHHHHHhhccchhhhhhhhHHHHHHHhhchhhhHHHHHHHHhcCHHHHHHHHHH
Q 017811          179 IGAADRRKMDGNALFKEEKLEEAMQQYEMAIAYMGDDFMFQLFGKYRDMALAVKNPCHLNMAACLLKLKRYEEAIGQCSL  258 (365)
Q Consensus       179 ~~~a~~~k~~G~~~~~~~~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~kl~~~~~A~~~~~~  258 (365)
                      .+.+..+...++.+++.+++++|+..+++++...|++...                 ++++|.|+.++|+|++|+..|++
T Consensus       117 Pd~~~a~~~~a~~L~~~~~~eeA~~~~~~~l~~~p~~~~~-----------------~~~~a~~l~~~g~~~~A~~~y~~  179 (694)
T PRK15179        117 PDSSEAFILMLRGVKRQQGIEAGRAEIELYFSGGSSSARE-----------------ILLEAKSWDEIGQSEQADACFER  179 (694)
T ss_pred             CCcHHHHHHHHHHHHHhccHHHHHHHHHHHhhcCCCCHHH-----------------HHHHHHHHHHhcchHHHHHHHHH
Confidence            4455677789999999999999999999999999997554                 99999999999999999999999


Q ss_pred             HHhCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC
Q 017811          259 VLGEDENNVKALFRRGKARAELGQTDAAREDFLKAGKFAPE  299 (365)
Q Consensus       259 aL~~~p~n~ka~~~~g~a~~~l~~~~~A~~~l~~al~l~P~  299 (365)
                      ++..+|++++++..+|.++..+|+.++|...|++|+.....
T Consensus       180 ~~~~~p~~~~~~~~~a~~l~~~G~~~~A~~~~~~a~~~~~~  220 (694)
T PRK15179        180 LSRQHPEFENGYVGWAQSLTRRGALWRARDVLQAGLDAIGD  220 (694)
T ss_pred             HHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhCc
Confidence            99999999999999999999999999999999999998654

>COG1729 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=98.76  E-value=8.4e-08  Score=85.89  Aligned_cols=114  Identities=19%  Similarity=0.165  Sum_probs=101.2

Q ss_pred             HHhhhhhhhhhhhhhHHHHHHHHHHHHHhhccchhhhhhhhHHHHHHHhhchhhhHHHHHHHHhcCHHHHHHHHHHHHhC
Q 017811          183 DRRKMDGNALFKEEKLEEAMQQYEMAIAYMGDDFMFQLFGKYRDMALAVKNPCHLNMAACLLKLKRYEEAIGQCSLVLGE  262 (365)
Q Consensus       183 ~~~k~~G~~~~~~~~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~kl~~~~~A~~~~~~aL~~  262 (365)
                      ....+.+-.+++.|+|..|...|..-|...|....              ...+++.||.|++.+|+|..|...|..+.+-
T Consensus       142 ~~~Y~~A~~~~ksgdy~~A~~~F~~fi~~YP~s~~--------------~~nA~yWLGe~~y~qg~y~~Aa~~f~~~~k~  207 (262)
T COG1729         142 TKLYNAALDLYKSGDYAEAEQAFQAFIKKYPNSTY--------------TPNAYYWLGESLYAQGDYEDAAYIFARVVKD  207 (262)
T ss_pred             hHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCcc--------------cchhHHHHHHHHHhcccchHHHHHHHHHHHh
Confidence            34888999999999999999999999999998533              2457999999999999999999999999999


Q ss_pred             CCCCH---HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCcHHHHHHHHHH
Q 017811          263 DENNV---KALFRRGKARAELGQTDAAREDFLKAGKFAPEDKSIARELRLL  310 (365)
Q Consensus       263 ~p~n~---ka~~~~g~a~~~l~~~~~A~~~l~~al~l~P~n~~~~~~l~~l  310 (365)
                      .|.++   .++|.+|.+...+|+.++|...|+.+++-.|+...+...-..+
T Consensus       208 ~P~s~KApdallKlg~~~~~l~~~d~A~atl~qv~k~YP~t~aA~~Ak~~~  258 (262)
T COG1729         208 YPKSPKAPDALLKLGVSLGRLGNTDEACATLQQVIKRYPGTDAAKLAKVAL  258 (262)
T ss_pred             CCCCCCChHHHHHHHHHHHHhcCHHHHHHHHHHHHHHCCCCHHHHHHHHHH
Confidence            88875   4799999999999999999999999999999988776554443

>CHL00033 ycf3 photosystem I assembly protein Ycf3

Probab=98.76  E-value=9e-08  Score=81.59  Aligned_cols=136  Identities=11%  Similarity=0.094  Sum_probs=103.1

Q ss_pred             hhhhhhhhhhHHHHHHHHHHHHHhhccchhhhhhhhHHHHHHHhhchhhhHHHHHHHHhcCHHHHHHHHHHHHhCCCCC-
Q 017811          188 DGNALFKEEKLEEAMQQYEMAIAYMGDDFMFQLFGKYRDMALAVKNPCHLNMAACLLKLKRYEEAIGQCSLVLGEDENN-  266 (365)
Q Consensus       188 ~G~~~~~~~~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~kl~~~~~A~~~~~~aL~~~p~n-  266 (365)
                      ..+.+|-...|..+...+...++..+.+               -...+++++|.++..+++|++|+..+++++.+.|+. 
T Consensus         5 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~---------------~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~   69 (168)
T CHL00033          5 QRNDNFIDKTFTIVADILLRILPTTSGE---------------KEAFTYYRDGMSAQSEGEYAEALQNYYEAMRLEIDPY   69 (168)
T ss_pred             cccccccccccccchhhhhHhccCCchh---------------HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccccch
Confidence            3456666677777777775555443332               134569999999999999999999999999987763 


Q ss_pred             --HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHHH-------HH------HHHHHHHHhcccCC
Q 017811          267 --VKALFRRGKARAELGQTDAAREDFLKAGKFAPEDKSIARELRLLAEHEK-------AV------YKKQKEIYKGIFGP  331 (365)
Q Consensus       267 --~ka~~~~g~a~~~l~~~~~A~~~l~~al~l~P~n~~~~~~l~~l~~~~~-------~~------~~~~k~~y~kmf~~  331 (365)
                        ..+++++|.++..+|++++|+..|++++.++|.+......+..+...+.       +.      ..+....|++.++.
T Consensus        70 ~~~~~~~~lg~~~~~~g~~~eA~~~~~~Al~~~~~~~~~~~~la~i~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~a~~~  149 (168)
T CHL00033         70 DRSYILYNIGLIHTSNGEHTKALEYYFQALERNPFLPQALNNMAVICHYRGEQAIEQGDSEIAEAWFDQAAEYWKQAIAL  149 (168)
T ss_pred             hhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHhhHHHHHcccHHHHHHHHHHHHHHHHHHHHh
Confidence              4599999999999999999999999999999999888888777766332       22      22334567777777


Q ss_pred             CCCcccc
Q 017811          332 RPEPKQK  338 (365)
Q Consensus       332 ~~~~~~~  338 (365)
                      .|.....
T Consensus       150 ~p~~~~~  156 (168)
T CHL00033        150 APGNYIE  156 (168)
T ss_pred             CcccHHH
Confidence            7755533

>PRK01490 tig trigger factor; Provisional

Probab=98.75  E-value=1.1e-06  Score=86.56  Aligned_cols=88  Identities=16%  Similarity=0.265  Sum_probs=74.9

Q ss_pred             CCCCCCEEEEEEEEEEcCCCeeeccCcCCCCcceeecCCCCchhhhHHHHHhcCCcCcEEEEEeccccccCCCCCCCCCC
Q 017811           66 KPSKYSTCFLHYRAWAESTRHKFDDTWLEQQPLEMVLGKEKKEMTGLAIGVSSMKAGEHALLHVGWELGYGKEGSFSFPN  145 (365)
Q Consensus        66 ~p~~g~~v~v~y~~~~~~~g~~fd~s~~~~~p~~f~lg~~~~~i~g~e~~l~~Mk~GE~~~~~i~~~~~yg~~g~~~~~~  145 (365)
                      .+..||.|+|+|.+.. + |.+|+++.  ..++.|.+|.+ ++++||+.+|.+|++|++..|.+++...|+....     
T Consensus       157 ~~~~gD~V~vd~~~~~-~-g~~~~~~~--~~~~~~~lg~~-~~~~~fee~L~G~k~Ge~~~~~~~~p~~~~~~~l-----  226 (435)
T PRK01490        157 PAENGDRVTIDFVGSI-D-GEEFEGGK--AEDFSLELGSG-RFIPGFEEQLVGMKAGEEKTIDVTFPEDYHAEDL-----  226 (435)
T ss_pred             cCCCCCEEEEEEEEEE-C-CEECcCCC--CCceEEEEcCC-CcchhHHHHhCCCCCCCeeEEEecCccccccccC-----
Confidence            3678999999999997 4 88998753  46899999999 8999999999999999999999988777765332     


Q ss_pred             CCCCCcEEEEEEEEeeecCc
Q 017811          146 VSPMADLVYEVVLIGFDETK  165 (365)
Q Consensus       146 ip~~~~l~~~iel~~~~~~~  165 (365)
                        .|.++.|.|.+..+....
T Consensus       227 --agk~~~f~v~v~~V~~~~  244 (435)
T PRK01490        227 --AGKEATFKVTVKEVKEKE  244 (435)
T ss_pred             --CCCeEEEEEEEEEeccCC
Confidence              578899999999998654

>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF

Probab=98.74  E-value=9.9e-08  Score=75.63  Aligned_cols=102  Identities=19%  Similarity=0.182  Sum_probs=86.3

Q ss_pred             hhhHHHHHHHHhcCHHHHHHHHHHHHhCCCCC---HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCc---HHHHHHHH
Q 017811          235 CHLNMAACLLKLKRYEEAIGQCSLVLGEDENN---VKALFRRGKARAELGQTDAAREDFLKAGKFAPED---KSIARELR  308 (365)
Q Consensus       235 ~~~nla~~~~kl~~~~~A~~~~~~aL~~~p~n---~ka~~~~g~a~~~l~~~~~A~~~l~~al~l~P~n---~~~~~~l~  308 (365)
                      .++++|..+++.|+|++|+..|.+++..+|++   ..+++.+|.++...|++++|+..|+.++..+|++   ..+...+.
T Consensus         4 ~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~   83 (119)
T TIGR02795         4 AYYDAALLVLKAGDYADAIQAFQAFLKKYPKSTYAPNAHYWLGEAYYAQGKYADAAKAFLAVVKKYPKSPKAPDALLKLG   83 (119)
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHCCCCCcccHHHHHHH
Confidence            48999999999999999999999999999877   6799999999999999999999999999999986   56677777


Q ss_pred             HHHHHHHHHHHHHHHHHhcccCCCCCccc
Q 017811          309 LLAEHEKAVYKKQKEIYKGIFGPRPEPKQ  337 (365)
Q Consensus       309 ~l~~~~~~~~~~~k~~y~kmf~~~~~~~~  337 (365)
                      .+....++..+.. ..|..++...|++..
T Consensus        84 ~~~~~~~~~~~A~-~~~~~~~~~~p~~~~  111 (119)
T TIGR02795        84 MSLQELGDKEKAK-ATLQQVIKRYPGSSA  111 (119)
T ss_pred             HHHHHhCChHHHH-HHHHHHHHHCcCChh
Confidence            7776666655444 558888777776543

Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.

>PRK10049 pgaA outer membrane protein PgaA; Provisional

Probab=98.72  E-value=1.9e-07  Score=98.32  Aligned_cols=132  Identities=14%  Similarity=0.025  Sum_probs=115.1

Q ss_pred             hhhhhhhhhhHHHHHHHHHHHHHhhccchhhhhhhhHHHHHHHhhchhhhHHHHHHHHhcCHHHHHHHHHHHHhCCCCCH
Q 017811          188 DGNALFKEEKLEEAMQQYEMAIAYMGDDFMFQLFGKYRDMALAVKNPCHLNMAACLLKLKRYEEAIGQCSLVLGEDENNV  267 (365)
Q Consensus       188 ~G~~~~~~~~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~kl~~~~~A~~~~~~aL~~~p~n~  267 (365)
                      --....-.|++.+|+..|.+++...|...                 .++.++|.++...|++.+|+..|+++|.++|.++
T Consensus        21 ~~~ia~~~g~~~~A~~~~~~~~~~~~~~a-----------------~~~~~lA~~~~~~g~~~~A~~~~~~al~~~P~~~   83 (765)
T PRK10049         21 WLQIALWAGQDAEVITVYNRYRVHMQLPA-----------------RGYAAVAVAYRNLKQWQNSLTLWQKALSLEPQND   83 (765)
T ss_pred             HHHHHHHcCCHHHHHHHHHHHHhhCCCCH-----------------HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH
Confidence            33456678999999999999988666542                 2489999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCCCcccc
Q 017811          268 KALFRRGKARAELGQTDAAREDFLKAGKFAPEDKSIARELRLLAEHEKAVYKKQKEIYKGIFGPRPEPKQK  338 (365)
Q Consensus       268 ka~~~~g~a~~~l~~~~~A~~~l~~al~l~P~n~~~~~~l~~l~~~~~~~~~~~k~~y~kmf~~~~~~~~~  338 (365)
                      .+++.+|.++...|++++|+..+++++..+|++.. ...+..+....++..++ -..|.+++...|+....
T Consensus        84 ~a~~~la~~l~~~g~~~eA~~~l~~~l~~~P~~~~-~~~la~~l~~~g~~~~A-l~~l~~al~~~P~~~~~  152 (765)
T PRK10049         84 DYQRGLILTLADAGQYDEALVKAKQLVSGAPDKAN-LLALAYVYKRAGRHWDE-LRAMTQALPRAPQTQQY  152 (765)
T ss_pred             HHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHH-HHHHHHHHHHCCCHHHH-HHHHHHHHHhCCCCHHH
Confidence            99999999999999999999999999999999999 88888888777766554 45599999988876655

>PRK14574 hmsH outer membrane protein; Provisional

Probab=98.71  E-value=2e-07  Score=97.62  Aligned_cols=155  Identities=11%  Similarity=0.036  Sum_probs=115.1

Q ss_pred             HHHhhhhhhhhhhhhhHHHHHHHHHHHHHhhccchhh--------hhhhhHHHHHH---H------hhchhhhHHHHHHH
Q 017811          182 ADRRKMDGNALFKEEKLEEAMQQYEMAIAYMGDDFMF--------QLFGKYRDMAL---A------VKNPCHLNMAACLL  244 (365)
Q Consensus       182 a~~~k~~G~~~~~~~~y~~A~~~y~~al~~~~~~~~~--------~~~~~~~~~~~---~------~~~~~~~nla~~~~  244 (365)
                      +...+..+...++.|+|..|+..|.++++..|.+...        ...+...+...   .      .....+..+|.+|.
T Consensus        34 ~~~~y~~aii~~r~Gd~~~Al~~L~qaL~~~P~~~~av~dll~l~~~~G~~~~A~~~~eka~~p~n~~~~~llalA~ly~  113 (822)
T PRK14574         34 ADTQYDSLIIRARAGDTAPVLDYLQEESKAGPLQSGQVDDWLQIAGWAGRDQEVIDVYERYQSSMNISSRGLASAARAYR  113 (822)
T ss_pred             hhHHHHHHHHHHhCCCHHHHHHHHHHHHhhCccchhhHHHHHHHHHHcCCcHHHHHHHHHhccCCCCCHHHHHHHHHHHH
Confidence            4467889999999999999999999999999986311        11111111111   1      11223444477999


Q ss_pred             HhcCHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHHHHHHHHHHHH
Q 017811          245 KLKRYEEAIGQCSLVLGEDENNVKALFRRGKARAELGQTDAAREDFLKAGKFAPEDKSIARELRLLAEHEKAVYKKQKEI  324 (365)
Q Consensus       245 kl~~~~~A~~~~~~aL~~~p~n~ka~~~~g~a~~~l~~~~~A~~~l~~al~l~P~n~~~~~~l~~l~~~~~~~~~~~k~~  324 (365)
                      .+|+|++|+..|+++++.+|+|+.+++-++.++...+++++|+..++++..++|.+... ..+..+.....+..+ +-..
T Consensus       114 ~~gdyd~Aiely~kaL~~dP~n~~~l~gLa~~y~~~~q~~eAl~~l~~l~~~dp~~~~~-l~layL~~~~~~~~~-AL~~  191 (822)
T PRK14574        114 NEKRWDQALALWQSSLKKDPTNPDLISGMIMTQADAGRGGVVLKQATELAERDPTVQNY-MTLSYLNRATDRNYD-ALQA  191 (822)
T ss_pred             HcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHhhcCCHHHHHHHHHHhcccCcchHHH-HHHHHHHHhcchHHH-HHHH
Confidence            99999999999999999999999999999999999999999999999999999987665 445555444344433 5666


Q ss_pred             HhcccCCCCCcccc
Q 017811          325 YKGIFGPRPEPKQK  338 (365)
Q Consensus       325 y~kmf~~~~~~~~~  338 (365)
                      |++++...|+..+.
T Consensus       192 ~ekll~~~P~n~e~  205 (822)
T PRK14574        192 SSEAVRLAPTSEEV  205 (822)
T ss_pred             HHHHHHhCCCCHHH
Confidence            99999888876644

>TIGR00115 tig trigger factor

Probab=98.71  E-value=1.4e-07  Score=92.14  Aligned_cols=88  Identities=17%  Similarity=0.290  Sum_probs=76.0

Q ss_pred             CCCCCCEEEEEEEEEEcCCCeeeccCcCCCCcceeecCCCCchhhhHHHHHhcCCcCcEEEEEeccccccCCCCCCCCCC
Q 017811           66 KPSKYSTCFLHYRAWAESTRHKFDDTWLEQQPLEMVLGKEKKEMTGLAIGVSSMKAGEHALLHVGWELGYGKEGSFSFPN  145 (365)
Q Consensus        66 ~p~~g~~v~v~y~~~~~~~g~~fd~s~~~~~p~~f~lg~~~~~i~g~e~~l~~Mk~GE~~~~~i~~~~~yg~~g~~~~~~  145 (365)
                      .+..||.|+|+|+++. + |..|+++.  ..++.|.+|.+ .+++||+.+|.+|++|++..|.+++...|+..+.     
T Consensus       146 ~~~~gD~V~v~~~~~~-d-g~~~~~~~--~~~~~~~lg~~-~~~~~~ee~L~G~k~Gd~~~~~v~~p~~~~~~~~-----  215 (408)
T TIGR00115       146 AAEKGDRVTIDFEGFI-D-GEAFEGGK--AENFSLELGSG-QFIPGFEEQLVGMKAGEEKEIKVTFPEDYHAEEL-----  215 (408)
T ss_pred             ccCCCCEEEEEEEEEE-C-CEECcCCC--CCCeEEEECCC-CcchhHHHHhCCCCCCCeeEEEecCccccCcccC-----
Confidence            4678999999999976 4 89998763  56899999998 8999999999999999999999998888875442     


Q ss_pred             CCCCCcEEEEEEEEeeecCc
Q 017811          146 VSPMADLVYEVVLIGFDETK  165 (365)
Q Consensus       146 ip~~~~l~~~iel~~~~~~~  165 (365)
                        +|.++.|.|++.++....
T Consensus       216 --~gk~~~f~v~i~~I~~~~  233 (408)
T TIGR00115       216 --AGKEATFKVTVKEVKEKE  233 (408)
T ss_pred             --CCCeEEEEEEEEEeccCC
Confidence              688999999999998654

Trigger factor is a ribosome-associated molecular chaperone and is the first chaperone to interact with nascent polypeptide. Trigger factor can bind at the same time as the signal recognition particle (SRP), but is excluded by the SRP receptor (FtsY). The central domain of trigger factor has peptidyl-prolyl cis/trans isomerase activity. This protein is found in a single copy in virtually every bacterial genome.

>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A

Probab=98.70  E-value=6.3e-08  Score=69.22  Aligned_cols=67  Identities=27%  Similarity=0.321  Sum_probs=59.1

Q ss_pred             hhhhhhHHHHHHHHHHHHHhhccchhhhhhhhHHHHHHHhhchhhhHHHHHHHHhcCHHHHHHHHHHHHhCCCCCHHHHH
Q 017811          192 LFKEEKLEEAMQQYEMAIAYMGDDFMFQLFGKYRDMALAVKNPCHLNMAACLLKLKRYEEAIGQCSLVLGEDENNVKALF  271 (365)
Q Consensus       192 ~~~~~~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~kl~~~~~A~~~~~~aL~~~p~n~ka~~  271 (365)
                      +++.|+|.+|+..|++++...|.+..                 +++++|.||++.|++++|...+.+++..+|+++..+.
T Consensus         1 ll~~~~~~~A~~~~~~~l~~~p~~~~-----------------~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~   63 (68)
T PF14559_consen    1 LLKQGDYDEAIELLEKALQRNPDNPE-----------------ARLLLAQCYLKQGQYDEAEELLERLLKQDPDNPEYQQ   63 (68)
T ss_dssp             HHHTTHHHHHHHHHHHHHHHTTTSHH-----------------HHHHHHHHHHHTT-HHHHHHHHHCCHGGGTTHHHHHH
T ss_pred             ChhccCHHHHHHHHHHHHHHCCCCHH-----------------HHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCHHHHHH
Confidence            46889999999999999999998754                 4889999999999999999999999999999877776


Q ss_pred             HHHH
Q 017811          272 RRGK  275 (365)
Q Consensus       272 ~~g~  275 (365)
                      -+++
T Consensus        64 l~a~   67 (68)
T PF14559_consen   64 LLAQ   67 (68)
T ss_dssp             HHHH
T ss_pred             HHhc
Confidence            6654

...

>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]

Probab=98.69  E-value=2.8e-07  Score=81.69  Aligned_cols=105  Identities=18%  Similarity=0.222  Sum_probs=91.4

Q ss_pred             hhHHHHHHHHhcCHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHHH
Q 017811          236 HLNMAACLLKLKRYEEAIGQCSLVLGEDENNVKALFRRGKARAELGQTDAAREDFLKAGKFAPEDKSIARELRLLAEHEK  315 (365)
Q Consensus       236 ~~nla~~~~kl~~~~~A~~~~~~aL~~~p~n~ka~~~~g~a~~~l~~~~~A~~~l~~al~l~P~n~~~~~~l~~l~~~~~  315 (365)
                      +.-+|..++..|+|..|+..+.++..++|+++++|.-+|.+|.++|++++|...|.+++++.|+++.+...+....-...
T Consensus       103 l~~~gk~~~~~g~~~~A~~~~rkA~~l~p~d~~~~~~lgaaldq~Gr~~~Ar~ay~qAl~L~~~~p~~~nNlgms~~L~g  182 (257)
T COG5010         103 LAAQGKNQIRNGNFGEAVSVLRKAARLAPTDWEAWNLLGAALDQLGRFDEARRAYRQALELAPNEPSIANNLGMSLLLRG  182 (257)
T ss_pred             HHHHHHHHHHhcchHHHHHHHHHHhccCCCChhhhhHHHHHHHHccChhHHHHHHHHHHHhccCCchhhhhHHHHHHHcC
Confidence            44589999999999999999999999999999999999999999999999999999999999999999999999988888


Q ss_pred             HHHHHHHHHHhcccCCCCCccccch
Q 017811          316 AVYKKQKEIYKGIFGPRPEPKQKKN  340 (365)
Q Consensus       316 ~~~~~~k~~y~kmf~~~~~~~~~~~  340 (365)
                      +.+.+++-+-.-.+....+....++
T Consensus       183 d~~~A~~lll~a~l~~~ad~~v~~N  207 (257)
T COG5010         183 DLEDAETLLLPAYLSPAADSRVRQN  207 (257)
T ss_pred             CHHHHHHHHHHHHhCCCCchHHHHH
Confidence            8877777765555555544444433

>PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins

Probab=98.68  E-value=3.2e-07  Score=77.14  Aligned_cols=110  Identities=27%  Similarity=0.229  Sum_probs=85.3

Q ss_pred             hHHHHHHHHHHHHHhhccchhhhhhhhHHHHHHHhhchhhhHHHHHHHHh----------cCHHHHHHHHHHHHhCCCCC
Q 017811          197 KLEEAMQQYEMAIAYMGDDFMFQLFGKYRDMALAVKNPCHLNMAACLLKL----------KRYEEAIGQCSLVLGEDENN  266 (365)
Q Consensus       197 ~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~kl----------~~~~~A~~~~~~aL~~~p~n  266 (365)
                      -|+.|.+.|+.....+|.+.+.                 ++|=|.+++.+          .-+++|+.-++.||.++|+.
T Consensus         6 ~FE~ark~aea~y~~nP~Dadn-----------------L~~WG~ALLELAqfk~g~es~~miedAisK~eeAL~I~P~~   68 (186)
T PF06552_consen    6 FFEHARKKAEAAYAKNPLDADN-----------------LTNWGGALLELAQFKQGPESKKMIEDAISKFEEALKINPNK   68 (186)
T ss_dssp             HHHHHHHHHHHHHHH-TT-HHH-----------------HHHHHHHHHHHHHHS-HHHHHHHHHHHHHHHHHHHHH-TT-
T ss_pred             HHHHHHHHHHHHHHhCcHhHHH-----------------HHHHHHHHHHHHhccCcchHHHHHHHHHHHHHHHHhcCCch
Confidence            4778999999999999987543                 55555555554          34778999999999999999


Q ss_pred             HHHHHHHHHHHHHcCC-----------HHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHHHHHHHHHHH
Q 017811          267 VKALFRRGKARAELGQ-----------TDAAREDFLKAGKFAPEDKSIARELRLLAEHEKAVYKKQKE  323 (365)
Q Consensus       267 ~ka~~~~g~a~~~l~~-----------~~~A~~~l~~al~l~P~n~~~~~~l~~l~~~~~~~~~~~k~  323 (365)
                      ..|++.+|.||..++.           |++|..+|++|...+|+|...+..|....+.-.-+.+-.|.
T Consensus        69 hdAlw~lGnA~ts~A~l~~d~~~A~~~F~kA~~~FqkAv~~~P~ne~Y~ksLe~~~kap~lh~e~~~~  136 (186)
T PF06552_consen   69 HDALWCLGNAYTSLAFLTPDTAEAEEYFEKATEYFQKAVDEDPNNELYRKSLEMAAKAPELHMEIHKQ  136 (186)
T ss_dssp             HHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHH-TT-HHHHHHHHHHHTHHHHHHHHHHS
T ss_pred             HHHHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHhhHHHHHHHHHH
Confidence            9999999999998866           79999999999999999999999999887766666555554

Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A.

>PRK02603 photosystem I assembly protein Ycf3; Provisional

Probab=98.68  E-value=2.9e-07  Score=78.80  Aligned_cols=103  Identities=18%  Similarity=0.207  Sum_probs=84.0

Q ss_pred             chhhhHHHHHHHHhcCHHHHHHHHHHHHhCCCCC---HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCcHHHHHHHHH
Q 017811          233 NPCHLNMAACLLKLKRYEEAIGQCSLVLGEDENN---VKALFRRGKARAELGQTDAAREDFLKAGKFAPEDKSIARELRL  309 (365)
Q Consensus       233 ~~~~~nla~~~~kl~~~~~A~~~~~~aL~~~p~n---~ka~~~~g~a~~~l~~~~~A~~~l~~al~l~P~n~~~~~~l~~  309 (365)
                      ..+++++|.++...|++++|+.+|++++.+.|+.   ..+++.+|.++..+|++++|+..|.+++.++|++......+..
T Consensus        35 a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~  114 (172)
T PRK02603         35 AFVYYRDGMSAQADGEYAEALENYEEALKLEEDPNDRSYILYNMGIIYASNGEHDKALEYYHQALELNPKQPSALNNIAV  114 (172)
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHHHHH
Confidence            4469999999999999999999999999887653   5799999999999999999999999999999999988888877


Q ss_pred             HHHHHHHH-------------HHHHHHHHhcccCCCCCc
Q 017811          310 LAEHEKAV-------------YKKQKEIYKGIFGPRPEP  335 (365)
Q Consensus       310 l~~~~~~~-------------~~~~k~~y~kmf~~~~~~  335 (365)
                      +...+.+.             .....+.+.+.+...|++
T Consensus       115 ~~~~~g~~~~a~~~~~~A~~~~~~A~~~~~~a~~~~p~~  153 (172)
T PRK02603        115 IYHKRGEKAEEAGDQDEAEALFDKAAEYWKQAIRLAPNN  153 (172)
T ss_pred             HHHHcCChHhHhhCHHHHHHHHHHHHHHHHHHHhhCchh
Confidence            76554432             223444566666666544

>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional

Probab=98.67  E-value=3.1e-07  Score=87.98  Aligned_cols=63  Identities=17%  Similarity=0.140  Sum_probs=60.4

Q ss_pred             hhhHHHHHHHHhcCHHHHHHHHHHHHhCCCCCHHH---HHHHHHHHHHcCCHHHHHHHHHHHHhhC
Q 017811          235 CHLNMAACLLKLKRYEEAIGQCSLVLGEDENNVKA---LFRRGKARAELGQTDAAREDFLKAGKFA  297 (365)
Q Consensus       235 ~~~nla~~~~kl~~~~~A~~~~~~aL~~~p~n~ka---~~~~g~a~~~l~~~~~A~~~l~~al~l~  297 (365)
                      .++|+|.+|+++|+|++|+..|+++|+++|++..+   ||++|.+|..+|++++|+.+|++|+++.
T Consensus        77 a~~NLG~AL~~lGryeEAIa~f~rALeL~Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrALels  142 (453)
T PLN03098         77 DAVNLGLSLFSKGRVKDALAQFETALELNPNPDEAQAAYYNKACCHAYREEGKKAADCLRTALRDY  142 (453)
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhc
Confidence            59999999999999999999999999999999965   9999999999999999999999999983

>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism]

Probab=98.67  E-value=1.6e-07  Score=95.71  Aligned_cols=144  Identities=15%  Similarity=0.094  Sum_probs=118.2

Q ss_pred             HhhhhhhhhhhhhhHHHHHHHHHHHHHhhccchhhhhhhhHHHHHHHhhchhhhHHHHHHHHhcCHHHHHHHHHHHHhCC
Q 017811          184 RRKMDGNALFKEEKLEEAMQQYEMAIAYMGDDFMFQLFGKYRDMALAVKNPCHLNMAACLLKLKRYEEAIGQCSLVLGED  263 (365)
Q Consensus       184 ~~k~~G~~~~~~~~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~kl~~~~~A~~~~~~aL~~~  263 (365)
                      -+.+.|..+|..|.+..|...+..|+..+......+       .-....+++.+|+|.|+-.++++..|...|..++...
T Consensus       454 ~LNNvaslhf~~g~~~~A~~~f~~A~~~~~~~~n~d-------e~~~~~lt~~YNlarl~E~l~~~~~A~e~Yk~Ilkeh  526 (1018)
T KOG2002|consen  454 VLNNVASLHFRLGNIEKALEHFKSALGKLLEVANKD-------EGKSTNLTLKYNLARLLEELHDTEVAEEMYKSILKEH  526 (1018)
T ss_pred             HHHhHHHHHHHhcChHHHHHHHHHHhhhhhhhcCcc-------ccccchhHHHHHHHHHHHhhhhhhHHHHHHHHHHHHC
Confidence            456788999999999999999999998843211100       0012235668999999999999999999999999999


Q ss_pred             CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCCCc
Q 017811          264 ENNVKALFRRGKARAELGQTDAAREDFLKAGKFAPEDKSIARELRLLAEHEKAVYKKQKEIYKGIFGPRPEP  335 (365)
Q Consensus       264 p~n~ka~~~~g~a~~~l~~~~~A~~~l~~al~l~P~n~~~~~~l~~l~~~~~~~~~~~k~~y~kmf~~~~~~  335 (365)
                      |.++.+|.|+|......++..+|...++.++.++..|+.++..++.++....+.....+. |..+|+.....
T Consensus       527 p~YId~ylRl~~ma~~k~~~~ea~~~lk~~l~~d~~np~arsl~G~~~l~k~~~~~a~k~-f~~i~~~~~~~  597 (1018)
T KOG2002|consen  527 PGYIDAYLRLGCMARDKNNLYEASLLLKDALNIDSSNPNARSLLGNLHLKKSEWKPAKKK-FETILKKTSTK  597 (1018)
T ss_pred             chhHHHHHHhhHHHHhccCcHHHHHHHHHHHhcccCCcHHHHHHHHHHHhhhhhcccccH-HHHHHhhhccC
Confidence            999999999998888899999999999999999999999999999998776666555444 77777666655

>KOG1310 consensus WD40 repeat protein [General function prediction only]

Probab=98.67  E-value=9.5e-08  Score=91.62  Aligned_cols=119  Identities=26%  Similarity=0.216  Sum_probs=105.4

Q ss_pred             HHHHHHHHHHhhhhhhhhhhhhhHHHHHHHHHHHHHhhccchhhhhhhhHHHHHHHhhchhhhHHHHHHHHhc---CHHH
Q 017811          175 VEERIGAADRRKMDGNALFKEEKLEEAMQQYEMAIAYMGDDFMFQLFGKYRDMALAVKNPCHLNMAACLLKLK---RYEE  251 (365)
Q Consensus       175 ~~e~~~~a~~~k~~G~~~~~~~~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~kl~---~~~~  251 (365)
                      .-+....++..+.+||..|.......|+..|.+++...|....                 +|.|+|.++++.+   +-..
T Consensus       367 ~~eL~e~ie~~~~egnd~ly~~~~~~~i~~~s~a~q~~~~~~~-----------------~l~nraa~lmkRkW~~d~~~  429 (758)
T KOG1310|consen  367 FYELPENIEKFKTEGNDGLYESIVSGAISHYSRAIQYVPDAIY-----------------LLENRAAALMKRKWRGDSYL  429 (758)
T ss_pred             hhhchHHHHHHHhhccchhhhHHHHHHHHHHHHHhhhccchhH-----------------HHHhHHHHHHhhhccccHHH
Confidence            3567888999999999999999999999999999999987543                 5999999999975   6778


Q ss_pred             HHHHHHHHHhCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCcHHHHHHHHHH
Q 017811          252 AIGQCSLVLGEDENNVKALFRRGKARAELGQTDAAREDFLKAGKFAPEDKSIARELRLL  310 (365)
Q Consensus       252 A~~~~~~aL~~~p~n~ka~~~~g~a~~~l~~~~~A~~~l~~al~l~P~n~~~~~~l~~l  310 (365)
                      |+.+|..||+++|...||+||++.++..++++.+|+.+...+....|.+.+......-+
T Consensus       430 AlrDch~Alrln~s~~kah~~la~aL~el~r~~eal~~~~alq~~~Ptd~a~~~~v~~l  488 (758)
T KOG1310|consen  430 ALRDCHVALRLNPSIQKAHFRLARALNELTRYLEALSCHWALQMSFPTDVARQNFVLCL  488 (758)
T ss_pred             HHHhHHhhccCChHHHHHHHHHHHHHHHHhhHHHhhhhHHHHhhcCchhhhhhhhhhcc
Confidence            99999999999999999999999999999999999999999998999776665554433

>KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms]

Probab=98.66  E-value=1.6e-07  Score=93.73  Aligned_cols=103  Identities=26%  Similarity=0.205  Sum_probs=81.8

Q ss_pred             HHHhhhhhhhhhhhhhHHHHHHHHHHHHHhhccchhhhhhhhHHHHHHHhhchhhhHHHHHHHHhcCHHHHHH--HHHHH
Q 017811          182 ADRRKMDGNALFKEEKLEEAMQQYEMAIAYMGDDFMFQLFGKYRDMALAVKNPCHLNMAACLLKLKRYEEAIG--QCSLV  259 (365)
Q Consensus       182 a~~~k~~G~~~~~~~~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~kl~~~~~A~~--~~~~a  259 (365)
                      +..+...|..+..+|++.+|...|..|+.++|++..                 +...+|.|+++.|+..-|..  ....+
T Consensus       684 ~~~~~~~G~~~~~~~~~~EA~~af~~Al~ldP~hv~-----------------s~~Ala~~lle~G~~~la~~~~~L~da  746 (799)
T KOG4162|consen  684 ASVYYLRGLLLEVKGQLEEAKEAFLVALALDPDHVP-----------------SMTALAELLLELGSPRLAEKRSLLSDA  746 (799)
T ss_pred             HHHHHHhhHHHHHHHhhHHHHHHHHHHHhcCCCCcH-----------------HHHHHHHHHHHhCCcchHHHHHHHHHH
Confidence            344567778888888888888888888888887643                 36778888888887766666  78888


Q ss_pred             HhCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCcH
Q 017811          260 LGEDENNVKALFRRGKARAELGQTDAAREDFLKAGKFAPEDK  301 (365)
Q Consensus       260 L~~~p~n~ka~~~~g~a~~~l~~~~~A~~~l~~al~l~P~n~  301 (365)
                      +++||.|.+|||.+|.++..+|+.+.|..+|..|+++++.++
T Consensus       747 lr~dp~n~eaW~~LG~v~k~~Gd~~~Aaecf~aa~qLe~S~P  788 (799)
T KOG4162|consen  747 LRLDPLNHEAWYYLGEVFKKLGDSKQAAECFQAALQLEESNP  788 (799)
T ss_pred             HhhCCCCHHHHHHHHHHHHHccchHHHHHHHHHHHhhccCCC
Confidence            888888888888888888888888888888888888887765

>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function

Probab=98.65  E-value=3e-07  Score=76.40  Aligned_cols=134  Identities=13%  Similarity=0.027  Sum_probs=86.3

Q ss_pred             HHHHHHHhhhhhhhhhhhhhHHHHHHHHHHHHHhhccchhhhhhhhHHHHHHHhhchhhhHHHHHHHHhcCHHHHHHHHH
Q 017811          178 RIGAADRRKMDGNALFKEEKLEEAMQQYEMAIAYMGDDFMFQLFGKYRDMALAVKNPCHLNMAACLLKLKRYEEAIGQCS  257 (365)
Q Consensus       178 ~~~~a~~~k~~G~~~~~~~~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~kl~~~~~A~~~~~  257 (365)
                      ....+..........+..+++..+...+...+.-.|....              ...+.+.+|.+++..|++++|+..++
T Consensus         7 ~~~~a~~~y~~~~~~~~~~~~~~~~~~~~~l~~~~~~s~y--------------a~~A~l~lA~~~~~~g~~~~A~~~l~   72 (145)
T PF09976_consen    7 QAEQASALYEQALQALQAGDPAKAEAAAEQLAKDYPSSPY--------------AALAALQLAKAAYEQGDYDEAKAALE   72 (145)
T ss_pred             HHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCChH--------------HHHHHHHHHHHHHHCCCHHHHHHHHH
Confidence            4455666666666666777777777777777777766421              13346777777777777777777777


Q ss_pred             HHHhCCCCC---HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 017811          258 LVLGEDENN---VKALFRRGKARAELGQTDAAREDFLKAGKFAPEDKSIARELRLLAEHEKAVYKKQKEIYKG  327 (365)
Q Consensus       258 ~aL~~~p~n---~ka~~~~g~a~~~l~~~~~A~~~l~~al~l~P~n~~~~~~l~~l~~~~~~~~~~~k~~y~k  327 (365)
                      .++...|+.   ..+.+|+|.+++..|+|++|+..|..+ .-.+-.+.+...++.+....++..++.. .|.+
T Consensus        73 ~~~~~~~d~~l~~~a~l~LA~~~~~~~~~d~Al~~L~~~-~~~~~~~~~~~~~Gdi~~~~g~~~~A~~-~y~~  143 (145)
T PF09976_consen   73 KALANAPDPELKPLARLRLARILLQQGQYDEALATLQQI-PDEAFKALAAELLGDIYLAQGDYDEARA-AYQK  143 (145)
T ss_pred             HHHhhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHhc-cCcchHHHHHHHHHHHHHHCCCHHHHHH-HHHH
Confidence            777766544   347777777777777777777777552 2233345566666677666655544433 3543

>KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]

Probab=98.59  E-value=5.2e-07  Score=87.39  Aligned_cols=166  Identities=17%  Similarity=0.148  Sum_probs=115.6

Q ss_pred             HHHhhhhhhhhhhhhhHHHHHHHHHHHHHhhccchhhhh-hh-hH-----HHHHHHhh----------chhhhHHHHHHH
Q 017811          182 ADRRKMDGNALFKEEKLEEAMQQYEMAIAYMGDDFMFQL-FG-KY-----RDMALAVK----------NPCHLNMAACLL  244 (365)
Q Consensus       182 a~~~k~~G~~~~~~~~y~~A~~~y~~al~~~~~~~~~~~-~~-~~-----~~~~~~~~----------~~~~~nla~~~~  244 (365)
                      +..|..-|..+.-.+..++|+.+|..|-++.+....-.+ .+ +.     ......+.          .-++.-+|.+.+
T Consensus       346 gpaWl~fghsfa~e~EhdQAmaaY~tAarl~~G~hlP~LYlgmey~~t~n~kLAe~Ff~~A~ai~P~Dplv~~Elgvvay  425 (611)
T KOG1173|consen  346 GPAWLAFGHSFAGEGEHDQAMAAYFTAARLMPGCHLPSLYLGMEYMRTNNLKLAEKFFKQALAIAPSDPLVLHELGVVAY  425 (611)
T ss_pred             cHHHHHHhHHhhhcchHHHHHHHHHHHHHhccCCcchHHHHHHHHHHhccHHHHHHHHHHHHhcCCCcchhhhhhhheee
Confidence            334555666666666666666666666666654321000 00 00     00000000          124778899999


Q ss_pred             HhcCHHHHHHHHHHHHhC----CCC---CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHHHHH
Q 017811          245 KLKRYEEAIGQCSLVLGE----DEN---NVKALFRRGKARAELGQTDAAREDFLKAGKFAPEDKSIARELRLLAEHEKAV  317 (365)
Q Consensus       245 kl~~~~~A~~~~~~aL~~----~p~---n~ka~~~~g~a~~~l~~~~~A~~~l~~al~l~P~n~~~~~~l~~l~~~~~~~  317 (365)
                      ..+.|.+|+.++..+|..    .+.   ..-.+.++|.++..++.|++|+..|+++|.+.|.+..+...++.+...++..
T Consensus       426 ~~~~y~~A~~~f~~~l~~ik~~~~e~~~w~p~~~NLGH~~Rkl~~~~eAI~~~q~aL~l~~k~~~~~asig~iy~llgnl  505 (611)
T KOG1173|consen  426 TYEEYPEALKYFQKALEVIKSVLNEKIFWEPTLNNLGHAYRKLNKYEEAIDYYQKALLLSPKDASTHASIGYIYHLLGNL  505 (611)
T ss_pred             hHhhhHHHHHHHHHHHHHhhhccccccchhHHHHhHHHHHHHHhhHHHHHHHHHHHHHcCCCchhHHHHHHHHHHHhcCh
Confidence            999999999999999832    221   2345889999999999999999999999999999999999999998877766


Q ss_pred             HHHHHHHHhcccCCCCCccccchhHHHHHHH
Q 017811          318 YKKQKEIYKGIFGPRPEPKQKKNWLIIFWQL  348 (365)
Q Consensus       318 ~~~~k~~y~kmf~~~~~~~~~~~~~~~~~~~  348 (365)
                      . +.-..|-|.|...|++.-..-.++..++-
T Consensus       506 d-~Aid~fhKaL~l~p~n~~~~~lL~~aie~  535 (611)
T KOG1173|consen  506 D-KAIDHFHKALALKPDNIFISELLKLAIED  535 (611)
T ss_pred             H-HHHHHHHHHHhcCCccHHHHHHHHHHHHh
Confidence            5 45566899999999887665555555543

>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only]

Probab=98.59  E-value=1e-06  Score=84.23  Aligned_cols=128  Identities=16%  Similarity=0.037  Sum_probs=111.6

Q ss_pred             HhhhhhhhhhhhhhHHHHHHHHHHHHHhhccchhhhhhhhHHHHHHHhhchhhhHHHHHHHHhcCHHHHHHHHHHHHhCC
Q 017811          184 RRKMDGNALFKEEKLEEAMQQYEMAIAYMGDDFMFQLFGKYRDMALAVKNPCHLNMAACLLKLKRYEEAIGQCSLVLGED  263 (365)
Q Consensus       184 ~~k~~G~~~~~~~~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~kl~~~~~A~~~~~~aL~~~  263 (365)
                      ..+..+..++..+.++.|.......+...|+|..+                 ..-++.++++.|+.++|++.+++++.++
T Consensus       308 a~YG~A~~~~~~~~~d~A~~~l~~L~~~~P~N~~~-----------------~~~~~~i~~~~nk~~~A~e~~~kal~l~  370 (484)
T COG4783         308 AQYGRALQTYLAGQYDEALKLLQPLIAAQPDNPYY-----------------LELAGDILLEANKAKEAIERLKKALALD  370 (484)
T ss_pred             HHHHHHHHHHHhcccchHHHHHHHHHHhCCCCHHH-----------------HHHHHHHHHHcCChHHHHHHHHHHHhcC
Confidence            45567777888888999999998888888988665                 5567889999999999999999999999


Q ss_pred             CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Q 017811          264 ENNVKALFRRGKARAELGQTDAAREDFLKAGKFAPEDKSIARELRLLAEHEKAVYKKQKEIYKGI  328 (365)
Q Consensus       264 p~n~ka~~~~g~a~~~l~~~~~A~~~l~~al~l~P~n~~~~~~l~~l~~~~~~~~~~~k~~y~km  328 (365)
                      |++.-..+.+|++|++.|++.+|+..++..+.-+|+|+..+..|...+..+++..+.....-..+
T Consensus       371 P~~~~l~~~~a~all~~g~~~eai~~L~~~~~~~p~dp~~w~~LAqay~~~g~~~~a~~A~AE~~  435 (484)
T COG4783         371 PNSPLLQLNLAQALLKGGKPQEAIRILNRYLFNDPEDPNGWDLLAQAYAELGNRAEALLARAEGY  435 (484)
T ss_pred             CCccHHHHHHHHHHHhcCChHHHHHHHHHHhhcCCCCchHHHHHHHHHHHhCchHHHHHHHHHHH
Confidence            99999999999999999999999999999999999999999999999888877666555544444

>PF13371 TPR_9: Tetratricopeptide repeat

Probab=98.58  E-value=2.7e-07  Score=66.90  Aligned_cols=70  Identities=30%  Similarity=0.362  Sum_probs=63.1

Q ss_pred             hhhhhhhhhHHHHHHHHHHHHHhhccchhhhhhhhHHHHHHHhhchhhhHHHHHHHHhcCHHHHHHHHHHHHhCCCCCHH
Q 017811          189 GNALFKEEKLEEAMQQYEMAIAYMGDDFMFQLFGKYRDMALAVKNPCHLNMAACLLKLKRYEEAIGQCSLVLGEDENNVK  268 (365)
Q Consensus       189 G~~~~~~~~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~kl~~~~~A~~~~~~aL~~~p~n~k  268 (365)
                      .+.++..++|..|+..+++++.+.|.+..                 ++.++|.|+.++|+|.+|+.+++++++..|++..
T Consensus         2 ~~~~~~~~~~~~A~~~~~~~l~~~p~~~~-----------------~~~~~a~~~~~~g~~~~A~~~l~~~l~~~p~~~~   64 (73)
T PF13371_consen    2 KQIYLQQEDYEEALEVLERALELDPDDPE-----------------LWLQRARCLFQLGRYEEALEDLERALELSPDDPD   64 (73)
T ss_pred             HHHHHhCCCHHHHHHHHHHHHHhCcccch-----------------hhHHHHHHHHHhccHHHHHHHHHHHHHHCCCcHH
Confidence            46789999999999999999999998754                 4999999999999999999999999999999998


Q ss_pred             HHHHHHH
Q 017811          269 ALFRRGK  275 (365)
Q Consensus       269 a~~~~g~  275 (365)
                      +..-++.
T Consensus        65 ~~~~~a~   71 (73)
T PF13371_consen   65 ARALRAM   71 (73)
T ss_pred             HHHHHHh
Confidence            8776654

>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional

Probab=98.58  E-value=4.8e-07  Score=94.21  Aligned_cols=134  Identities=14%  Similarity=-0.044  Sum_probs=96.5

Q ss_pred             HHHHhhhhhhhhhhhhhHHHHHHHHHHHHHhhccchhhhhhhhHHHHHHHhhchhhhHHHHHHHHhcCHHHHHHH-----
Q 017811          181 AADRRKMDGNALFKEEKLEEAMQQYEMAIAYMGDDFMFQLFGKYRDMALAVKNPCHLNMAACLLKLKRYEEAIGQ-----  255 (365)
Q Consensus       181 ~a~~~k~~G~~~~~~~~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~kl~~~~~A~~~-----  255 (365)
                      ....+....+.+...+++++|+..+..++...|....+                 |+.+|..+++.+++..+...     
T Consensus        30 n~~a~~~Li~~~~~~~~~deai~i~~~~l~~~P~~i~~-----------------yy~~G~l~~q~~~~~~~~lv~~l~~   92 (906)
T PRK14720         30 KFKELDDLIDAYKSENLTDEAKDICEEHLKEHKKSISA-----------------LYISGILSLSRRPLNDSNLLNLIDS   92 (906)
T ss_pred             hHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCcceeh-----------------HHHHHHHHHhhcchhhhhhhhhhhh
Confidence            34566677788889999999999999999999986443                 66666666666555544443     


Q ss_pred             ------------HHHHHhCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHHHHHHHHHHH
Q 017811          256 ------------CSLVLGEDENNVKALFRRGKARAELGQTDAAREDFLKAGKFAPEDKSIARELRLLAEHEKAVYKKQKE  323 (365)
Q Consensus       256 ------------~~~aL~~~p~n~ka~~~~g~a~~~l~~~~~A~~~l~~al~l~P~n~~~~~~l~~l~~~~~~~~~~~k~  323 (365)
                                  +...+...+.|-.|++.+|.||..+|++++|...|+++++++|+|+.+...++......  ..++...
T Consensus        93 ~~~~~~~~~ve~~~~~i~~~~~~k~Al~~LA~~Ydk~g~~~ka~~~yer~L~~D~~n~~aLNn~AY~~ae~--dL~KA~~  170 (906)
T PRK14720         93 FSQNLKWAIVEHICDKILLYGENKLALRTLAEAYAKLNENKKLKGVWERLVKADRDNPEIVKKLATSYEEE--DKEKAIT  170 (906)
T ss_pred             cccccchhHHHHHHHHHHhhhhhhHHHHHHHHHHHHcCChHHHHHHHHHHHhcCcccHHHHHHHHHHHHHh--hHHHHHH
Confidence                        22222223444478888888888888888888888888888888888888888776666  5666677


Q ss_pred             HHhcccCCCC
Q 017811          324 IYKGIFGPRP  333 (365)
Q Consensus       324 ~y~kmf~~~~  333 (365)
                      +|++.+..--
T Consensus       171 m~~KAV~~~i  180 (906)
T PRK14720        171 YLKKAIYRFI  180 (906)
T ss_pred             HHHHHHHHHH
Confidence            7776654433

>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H

Probab=98.57  E-value=9.3e-08  Score=70.41  Aligned_cols=65  Identities=25%  Similarity=0.278  Sum_probs=56.6

Q ss_pred             chhhhHHHHHHHHhcCHHHHHHHHHHHHhC----CC---CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC
Q 017811          233 NPCHLNMAACLLKLKRYEEAIGQCSLVLGE----DE---NNVKALFRRGKARAELGQTDAAREDFLKAGKFA  297 (365)
Q Consensus       233 ~~~~~nla~~~~kl~~~~~A~~~~~~aL~~----~p---~n~ka~~~~g~a~~~l~~~~~A~~~l~~al~l~  297 (365)
                      ..++.|+|.+|..+|+|++|+.++++++++    .+   .-..+++++|.++..+|++++|+..|++|+++.
T Consensus         5 a~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~i~   76 (78)
T PF13424_consen    5 ANAYNNLARVYRELGRYDEALDYYEKALDIEEQLGDDHPDTANTLNNLGECYYRLGDYEEALEYYQKALDIF   76 (78)
T ss_dssp             HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhh
Confidence            457999999999999999999999999965    22   236799999999999999999999999999863

...

>KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription]

Probab=98.57  E-value=1.5e-06  Score=88.26  Aligned_cols=104  Identities=22%  Similarity=0.166  Sum_probs=85.4

Q ss_pred             HHHHHhhhhhhhhhhhhhHHHHHHHHHHHHHhhccchhhhhhhhHHHHHHHhhchhhhHHHHHHHHhcCHHHHHHHHHHH
Q 017811          180 GAADRRKMDGNALFKEEKLEEAMQQYEMAIAYMGDDFMFQLFGKYRDMALAVKNPCHLNMAACLLKLKRYEEAIGQCSLV  259 (365)
Q Consensus       180 ~~a~~~k~~G~~~~~~~~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~kl~~~~~A~~~~~~a  259 (365)
                      ..+.-+.+.+..+...|+|.+|+.+|..++...+...                .-+|+++|.||+.+|.+++|+.+|.+|
T Consensus       412 d~~dL~~d~a~al~~~~~~~~Al~~l~~i~~~~~~~~----------------~~vw~~~a~c~~~l~e~e~A~e~y~kv  475 (895)
T KOG2076|consen  412 DDVDLYLDLADALTNIGKYKEALRLLSPITNREGYQN----------------AFVWYKLARCYMELGEYEEAIEFYEKV  475 (895)
T ss_pred             hhHHHHHHHHHHHHhcccHHHHHHHHHHHhcCccccc----------------hhhhHHHHHHHHHHhhHHHHHHHHHHH
Confidence            3455677888888899999999999988877665532                235889999999999999999999999


Q ss_pred             HhCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC
Q 017811          260 LGEDENNVKALFRRGKARAELGQTDAAREDFLKAGKFAPE  299 (365)
Q Consensus       260 L~~~p~n~ka~~~~g~a~~~l~~~~~A~~~l~~al~l~P~  299 (365)
                      |.++|+|..+...++..+..+|+.++|+..+.....-||.
T Consensus       476 l~~~p~~~D~Ri~Lasl~~~~g~~EkalEtL~~~~~~D~~  515 (895)
T KOG2076|consen  476 LILAPDNLDARITLASLYQQLGNHEKALETLEQIINPDGR  515 (895)
T ss_pred             HhcCCCchhhhhhHHHHHHhcCCHHHHHHHHhcccCCCcc
Confidence            9999999999999999999999999999888877644433

>KOG2003 consensus TPR repeat-containing protein [General function prediction only]

Probab=98.55  E-value=1.6e-07  Score=88.68  Aligned_cols=98  Identities=19%  Similarity=0.253  Sum_probs=89.9

Q ss_pred             hhhhhhhhhhhhHHHHHHHHHHHHHhhccchhhhhhhhHHHHHHHhhchhhhHHHHHHHHhcCHHHHHHHHHHHHhCCCC
Q 017811          186 KMDGNALFKEEKLEEAMQQYEMAIAYMGDDFMFQLFGKYRDMALAVKNPCHLNMAACLLKLKRYEEAIGQCSLVLGEDEN  265 (365)
Q Consensus       186 k~~G~~~~~~~~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~kl~~~~~A~~~~~~aL~~~p~  265 (365)
                      .+.||.+|++.+|.+|++.|+.||...|.-.            .+++++++.|+|..+.++|.|+.||..|+.+++..| 
T Consensus       241 mnigni~~kkr~fskaikfyrmaldqvpsin------------k~~rikil~nigvtfiq~gqy~dainsfdh~m~~~p-  307 (840)
T KOG2003|consen  241 MNIGNIHFKKREFSKAIKFYRMALDQVPSIN------------KDMRIKILNNIGVTFIQAGQYDDAINSFDHCMEEAP-  307 (840)
T ss_pred             eeecceeeehhhHHHHHHHHHHHHhhccccc------------hhhHHHHHhhcCeeEEecccchhhHhhHHHHHHhCc-
Confidence            3689999999999999999999999998631            456788999999999999999999999999999998 


Q ss_pred             CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Q 017811          266 NVKALFRRGKARAELGQTDAAREDFLKAGKF  296 (365)
Q Consensus       266 n~ka~~~~g~a~~~l~~~~~A~~~l~~al~l  296 (365)
                      |.++-+++-.|++..|+-++-.+.|++.+.+
T Consensus       308 n~~a~~nl~i~~f~i~d~ekmkeaf~kli~i  338 (840)
T KOG2003|consen  308 NFIAALNLIICAFAIGDAEKMKEAFQKLIDI  338 (840)
T ss_pred             cHHhhhhhhhhheecCcHHHHHHHHHHHhcC
Confidence            7888889999999999999999999999875

>KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only]

Probab=98.54  E-value=4.9e-07  Score=89.87  Aligned_cols=135  Identities=14%  Similarity=0.128  Sum_probs=107.4

Q ss_pred             HHHHhhhhhhhhhhhhhHHHHHHHHHHHHHhhccchhhhhhhhHHHHHHHhhchhhhHHHHHHHHhcCHHHHHHHHHHHH
Q 017811          181 AADRRKMDGNALFKEEKLEEAMQQYEMAIAYMGDDFMFQLFGKYRDMALAVKNPCHLNMAACLLKLKRYEEAIGQCSLVL  260 (365)
Q Consensus       181 ~a~~~k~~G~~~~~~~~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~kl~~~~~A~~~~~~aL  260 (365)
                      .+.+++..|+..+.+++|.+|.++++..++++|--.                 ..|+++|.|.++++++..|..+|..++
T Consensus       484 sarA~r~~~~~~~~~~~fs~~~~hle~sl~~nplq~-----------------~~wf~~G~~ALqlek~q~av~aF~rcv  546 (777)
T KOG1128|consen  484 SARAQRSLALLILSNKDFSEADKHLERSLEINPLQL-----------------GTWFGLGCAALQLEKEQAAVKAFHRCV  546 (777)
T ss_pred             hHHHHHhhccccccchhHHHHHHHHHHHhhcCccch-----------------hHHHhccHHHHHHhhhHHHHHHHHHHh
Confidence            344455666667778999999999999999987643                 349999999999999999999999999


Q ss_pred             hCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCC
Q 017811          261 GEDENNVKALFRRGKARAELGQTDAAREDFLKAGKFAPEDKSIARELRLLAEHEKAVYKKQKEIYKGIFGPRP  333 (365)
Q Consensus       261 ~~~p~n~ka~~~~g~a~~~l~~~~~A~~~l~~al~l~P~n~~~~~~l~~l~~~~~~~~~~~k~~y~kmf~~~~  333 (365)
                      .++|+|..+|.+++.+|+.+++-.+|...++.|++-+-++..+..+...+........++.+. |.+++.-+.
T Consensus       547 tL~Pd~~eaWnNls~ayi~~~~k~ra~~~l~EAlKcn~~~w~iWENymlvsvdvge~eda~~A-~~rll~~~~  618 (777)
T KOG1128|consen  547 TLEPDNAEAWNNLSTAYIRLKKKKRAFRKLKEALKCNYQHWQIWENYMLVSVDVGEFEDAIKA-YHRLLDLRK  618 (777)
T ss_pred             hcCCCchhhhhhhhHHHHHHhhhHHHHHHHHHHhhcCCCCCeeeechhhhhhhcccHHHHHHH-HHHHHHhhh
Confidence            999999999999999999999999999999999998877777776666665655555544443 555544333

>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function

Probab=98.53  E-value=4.8e-06  Score=69.12  Aligned_cols=96  Identities=24%  Similarity=0.257  Sum_probs=81.4

Q ss_pred             HhhhhhhhhhhhhhHHHHHHHHHHHHHhhccchhhhhhhhHHHHHHHhhchhhhHHHHHHHHhcCHHHHHHHHHHHHhCC
Q 017811          184 RRKMDGNALFKEEKLEEAMQQYEMAIAYMGDDFMFQLFGKYRDMALAVKNPCHLNMAACLLKLKRYEEAIGQCSLVLGED  263 (365)
Q Consensus       184 ~~k~~G~~~~~~~~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~kl~~~~~A~~~~~~aL~~~  263 (365)
                      .....|..++..|+|++|+..|+.++...++.              .+...+.++||.+++..|+|++|+..+.. +.-.
T Consensus        50 A~l~lA~~~~~~g~~~~A~~~l~~~~~~~~d~--------------~l~~~a~l~LA~~~~~~~~~d~Al~~L~~-~~~~  114 (145)
T PF09976_consen   50 AALQLAKAAYEQGDYDEAKAALEKALANAPDP--------------ELKPLARLRLARILLQQGQYDEALATLQQ-IPDE  114 (145)
T ss_pred             HHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCH--------------HHHHHHHHHHHHHHHHcCCHHHHHHHHHh-ccCc
Confidence            45568899999999999999999999977543              22345689999999999999999999966 3445


Q ss_pred             CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 017811          264 ENNVKALFRRGKARAELGQTDAAREDFLKAG  294 (365)
Q Consensus       264 p~n~ka~~~~g~a~~~l~~~~~A~~~l~~al  294 (365)
                      +-.+.++..+|.+|...|++++|+..|++|+
T Consensus       115 ~~~~~~~~~~Gdi~~~~g~~~~A~~~y~~Al  145 (145)
T PF09976_consen  115 AFKALAAELLGDIYLAQGDYDEARAAYQKAL  145 (145)
T ss_pred             chHHHHHHHHHHHHHHCCCHHHHHHHHHHhC
Confidence            5567788899999999999999999999885

>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B

Probab=98.53  E-value=2.7e-07  Score=85.35  Aligned_cols=138  Identities=16%  Similarity=0.080  Sum_probs=101.5

Q ss_pred             HHhhhhhhhhhhhhhHHHHHHHHHHHHHhhccchhhhhhhhHHHHHHHhhchhhhHHHHHHHHhcCHHHHHHHHHHHHhC
Q 017811          183 DRRKMDGNALFKEEKLEEAMQQYEMAIAYMGDDFMFQLFGKYRDMALAVKNPCHLNMAACLLKLKRYEEAIGQCSLVLGE  262 (365)
Q Consensus       183 ~~~k~~G~~~~~~~~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~kl~~~~~A~~~~~~aL~~  262 (365)
                      ..+......+...+++.++...+.++....+...               ...++..+|.++.+.|++++|+.+++++|++
T Consensus       111 ~~l~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~---------------~~~~~~~~a~~~~~~G~~~~A~~~~~~al~~  175 (280)
T PF13429_consen  111 RYLLSALQLYYRLGDYDEAEELLEKLEELPAAPD---------------SARFWLALAEIYEQLGDPDKALRDYRKALEL  175 (280)
T ss_dssp             -------H-HHHTT-HHHHHHHHHHHHH-T---T----------------HHHHHHHHHHHHHCCHHHHHHHHHHHHHHH
T ss_pred             chhhHHHHHHHHHhHHHHHHHHHHHHHhccCCCC---------------CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc
Confidence            3444555677888999999999888775432110               1224889999999999999999999999999


Q ss_pred             CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCCCcc
Q 017811          263 DENNVKALFRRGKARAELGQTDAAREDFLKAGKFAPEDKSIARELRLLAEHEKAVYKKQKEIYKGIFGPRPEPK  336 (365)
Q Consensus       263 ~p~n~ka~~~~g~a~~~l~~~~~A~~~l~~al~l~P~n~~~~~~l~~l~~~~~~~~~~~k~~y~kmf~~~~~~~  336 (365)
                      +|+|..++..++.++...|+++++...+.......|.|+.+...++.+...+++..++. ..|.+.+...|++.
T Consensus       176 ~P~~~~~~~~l~~~li~~~~~~~~~~~l~~~~~~~~~~~~~~~~la~~~~~lg~~~~Al-~~~~~~~~~~p~d~  248 (280)
T PF13429_consen  176 DPDDPDARNALAWLLIDMGDYDEAREALKRLLKAAPDDPDLWDALAAAYLQLGRYEEAL-EYLEKALKLNPDDP  248 (280)
T ss_dssp             -TT-HHHHHHHHHHHCTTCHHHHHHHHHHHHHHH-HTSCCHCHHHHHHHHHHT-HHHHH-HHHHHHHHHSTT-H
T ss_pred             CCCCHHHHHHHHHHHHHCCChHHHHHHHHHHHHHCcCHHHHHHHHHHHhcccccccccc-cccccccccccccc
Confidence            99999999999999999999999999999988888999899999999988888766544 45888877666443

>PF12688 TPR_5: Tetratrico peptide repeat

Probab=98.51  E-value=1.6e-06  Score=69.24  Aligned_cols=98  Identities=24%  Similarity=0.120  Sum_probs=84.9

Q ss_pred             HhhhhhhhhhhhhhHHHHHHHHHHHHHhhccchhhhhhhhHHHHHHHhhchhhhHHHHHHHHhcCHHHHHHHHHHHHhCC
Q 017811          184 RRKMDGNALFKEEKLEEAMQQYEMAIAYMGDDFMFQLFGKYRDMALAVKNPCHLNMAACLLKLKRYEEAIGQCSLVLGED  263 (365)
Q Consensus       184 ~~k~~G~~~~~~~~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~kl~~~~~A~~~~~~aL~~~  263 (365)
                      .+.+.|..+-..|+..+|+..|++|+..-....              ....++.++|.++..+|++++|+..+++++...
T Consensus         3 ~~~~~A~a~d~~G~~~~Ai~~Y~~Al~~gL~~~--------------~~~~a~i~lastlr~LG~~deA~~~L~~~~~~~   68 (120)
T PF12688_consen    3 ALYELAWAHDSLGREEEAIPLYRRALAAGLSGA--------------DRRRALIQLASTLRNLGRYDEALALLEEALEEF   68 (120)
T ss_pred             hHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCch--------------HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC
Confidence            456788888999999999999999999644321              124468999999999999999999999999988


Q ss_pred             CC---CHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 017811          264 EN---NVKALFRRGKARAELGQTDAAREDFLKAGK  295 (365)
Q Consensus       264 p~---n~ka~~~~g~a~~~l~~~~~A~~~l~~al~  295 (365)
                      |+   +......++.++..+|++++|+..+-.++.
T Consensus        69 p~~~~~~~l~~f~Al~L~~~gr~~eAl~~~l~~la  103 (120)
T PF12688_consen   69 PDDELNAALRVFLALALYNLGRPKEALEWLLEALA  103 (120)
T ss_pred             CCccccHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence            88   888888899999999999999999988875

>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]

Probab=98.50  E-value=3.9e-06  Score=76.47  Aligned_cols=142  Identities=13%  Similarity=0.079  Sum_probs=77.8

Q ss_pred             CCCCHHHHHHHHHHhhhhhhhhhhhhhHHHHHHHHHHHHHhhccchhhhhhhhHHHHHHHhhchhhhHHHHHHHHhcCHH
Q 017811          171 SDMTVEERIGAADRRKMDGNALFKEEKLEEAMQQYEMAIAYMGDDFMFQLFGKYRDMALAVKNPCHLNMAACLLKLKRYE  250 (365)
Q Consensus       171 ~~~~~~e~~~~a~~~k~~G~~~~~~~~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~kl~~~~  250 (365)
                      .+++.+++   ...+...|..|+..|-|++|...|...+..-.-                 ...++-.|..+|.+..+|+
T Consensus        99 pdlT~~qr---~lAl~qL~~Dym~aGl~DRAE~~f~~L~de~ef-----------------a~~AlqqLl~IYQ~treW~  158 (389)
T COG2956          99 PDLTFEQR---LLALQQLGRDYMAAGLLDRAEDIFNQLVDEGEF-----------------AEGALQQLLNIYQATREWE  158 (389)
T ss_pred             CCCchHHH---HHHHHHHHHHHHHhhhhhHHHHHHHHHhcchhh-----------------hHHHHHHHHHHHHHhhHHH
Confidence            34555544   566788899999999999999999876653211                 1122344444555555555


Q ss_pred             HHHHHHHHHHhCCCCC-----HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHHHHHHHHHHHHH
Q 017811          251 EAIGQCSLVLGEDENN-----VKALFRRGKARAELGQTDAAREDFLKAGKFAPEDKSIARELRLLAEHEKAVYKKQKEIY  325 (365)
Q Consensus       251 ~A~~~~~~aL~~~p~n-----~ka~~~~g~a~~~l~~~~~A~~~l~~al~l~P~n~~~~~~l~~l~~~~~~~~~~~k~~y  325 (365)
                      +||+..++...+.+..     +..|..+|+.++...+++.|+..+++|++-+|++..+--.++.+....+++.+..+. |
T Consensus       159 KAId~A~~L~k~~~q~~~~eIAqfyCELAq~~~~~~~~d~A~~~l~kAlqa~~~cvRAsi~lG~v~~~~g~y~~AV~~-~  237 (389)
T COG2956         159 KAIDVAERLVKLGGQTYRVEIAQFYCELAQQALASSDVDRARELLKKALQADKKCVRASIILGRVELAKGDYQKAVEA-L  237 (389)
T ss_pred             HHHHHHHHHHHcCCccchhHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHhhCccceehhhhhhHHHHhccchHHHHHH-H
Confidence            5555555555444432     224444555555555555555555555555555555555555554444444433333 4


Q ss_pred             hcccCCCC
Q 017811          326 KGIFGPRP  333 (365)
Q Consensus       326 ~kmf~~~~  333 (365)
                      ..+++.++
T Consensus       238 e~v~eQn~  245 (389)
T COG2956         238 ERVLEQNP  245 (389)
T ss_pred             HHHHHhCh
Confidence            44444443

>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals

Probab=98.48  E-value=3.3e-06  Score=80.51  Aligned_cols=148  Identities=13%  Similarity=0.030  Sum_probs=110.4

Q ss_pred             HhhhhhhhhhhhhhHHHHHHHHHHHHHhhccchhhhh-----------hhhHHHHHHHh---------hchhhhHHHHHH
Q 017811          184 RRKMDGNALFKEEKLEEAMQQYEMAIAYMGDDFMFQL-----------FGKYRDMALAV---------KNPCHLNMAACL  243 (365)
Q Consensus       184 ~~k~~G~~~~~~~~y~~A~~~y~~al~~~~~~~~~~~-----------~~~~~~~~~~~---------~~~~~~nla~~~  243 (365)
                      ....+|..++..|++.+|+..+.+++...|.+...-.           .+........+         ...++.++|.++
T Consensus        45 ~~~~~a~~~~~~g~~~~A~~~~~~~l~~~P~~~~a~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~a~~~  124 (355)
T cd05804          45 RAHVEALSAWIAGDLPKALALLEQLLDDYPRDLLALKLHLGAFGLGDFSGMRDHVARVLPLWAPENPDYWYLLGMLAFGL  124 (355)
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHhHHHHHhcccccCchhHHHHHhccCcCCCCcHHHHHHHHHHH
Confidence            3456788999999999999999999999998652200           01110111100         012456788999


Q ss_pred             HHhcCHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCcHHH----HHHHHHHHHHHHHHHH
Q 017811          244 LKLKRYEEAIGQCSLVLGEDENNVKALFRRGKARAELGQTDAAREDFLKAGKFAPEDKSI----ARELRLLAEHEKAVYK  319 (365)
Q Consensus       244 ~kl~~~~~A~~~~~~aL~~~p~n~ka~~~~g~a~~~l~~~~~A~~~l~~al~l~P~n~~~----~~~l~~l~~~~~~~~~  319 (365)
                      ..+|++++|+..++++++++|+++.+++.+|.++...|++++|+..+.+++.+.|.+...    ...+..+....++..+
T Consensus       125 ~~~G~~~~A~~~~~~al~~~p~~~~~~~~la~i~~~~g~~~eA~~~l~~~l~~~~~~~~~~~~~~~~la~~~~~~G~~~~  204 (355)
T cd05804         125 EEAGQYDRAEEAARRALELNPDDAWAVHAVAHVLEMQGRFKEGIAFMESWRDTWDCSSMLRGHNWWHLALFYLERGDYEA  204 (355)
T ss_pred             HHcCCHHHHHHHHHHHHhhCCCCcHHHHHHHHHHHHcCCHHHHHHHHHhhhhccCCCcchhHHHHHHHHHHHHHCCCHHH
Confidence            999999999999999999999999999999999999999999999999999998854332    3356677666666655


Q ss_pred             HHHHHHhcccCCC
Q 017811          320 KQKEIYKGIFGPR  332 (365)
Q Consensus       320 ~~k~~y~kmf~~~  332 (365)
                      .. ..|...+...
T Consensus       205 A~-~~~~~~~~~~  216 (355)
T cd05804         205 AL-AIYDTHIAPS  216 (355)
T ss_pred             HH-HHHHHHhccc
Confidence            44 4467665433

A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.

>COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones]

Probab=98.48  E-value=6.1e-06  Score=74.92  Aligned_cols=131  Identities=14%  Similarity=0.072  Sum_probs=110.7

Q ss_pred             hHHHHHHHHHHHHHhhccchhhhhhhhHHHHHHHhhchhhhHHHHHHHHhcCHHHHHHHHHHHHhCCCCCHHHHHHHHHH
Q 017811          197 KLEEAMQQYEMAIAYMGDDFMFQLFGKYRDMALAVKNPCHLNMAACLLKLKRYEEAIGQCSLVLGEDENNVKALFRRGKA  276 (365)
Q Consensus       197 ~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~kl~~~~~A~~~~~~aL~~~p~n~ka~~~~g~a  276 (365)
                      ..+.-+...+.-|..+|.|..-                 +.-||.+|+.+|++..|...|.+++++.|+|+..+.-+|.+
T Consensus       137 ~~~~l~a~Le~~L~~nP~d~eg-----------------W~~Lg~~ym~~~~~~~A~~AY~~A~rL~g~n~~~~~g~aea  199 (287)
T COG4235         137 EMEALIARLETHLQQNPGDAEG-----------------WDLLGRAYMALGRASDALLAYRNALRLAGDNPEILLGLAEA  199 (287)
T ss_pred             cHHHHHHHHHHHHHhCCCCchh-----------------HHHHHHHHHHhcchhHHHHHHHHHHHhCCCCHHHHHHHHHH
Confidence            3455667777788888887543                 88999999999999999999999999999999999999999


Q ss_pred             HHHcCC---HHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCCCccccchhHHHH
Q 017811          277 RAELGQ---TDAAREDFLKAGKFAPEDKSIARELRLLAEHEKAVYKKQKEIYKGIFGPRPEPKQKKNWLIIF  345 (365)
Q Consensus       277 ~~~l~~---~~~A~~~l~~al~l~P~n~~~~~~l~~l~~~~~~~~~~~k~~y~kmf~~~~~~~~~~~~~~~~  345 (365)
                      ++...+   -.++...|++++.+||.|..++..|..-....+++.+.. ..|++|++..|..++........
T Consensus       200 L~~~a~~~~ta~a~~ll~~al~~D~~~iral~lLA~~afe~g~~~~A~-~~Wq~lL~~lp~~~~rr~~ie~~  270 (287)
T COG4235         200 LYYQAGQQMTAKARALLRQALALDPANIRALSLLAFAAFEQGDYAEAA-AAWQMLLDLLPADDPRRSLIERS  270 (287)
T ss_pred             HHHhcCCcccHHHHHHHHHHHhcCCccHHHHHHHHHHHHHcccHHHHH-HHHHHHHhcCCCCCchHHHHHHH
Confidence            988755   578999999999999999999999999877777776655 45999999999888775544333

>KOG1840 consensus Kinesin light chain [Cytoskeleton]

Probab=98.48  E-value=1.8e-06  Score=85.15  Aligned_cols=146  Identities=18%  Similarity=0.114  Sum_probs=112.6

Q ss_pred             HHHHHHHhhhhhhhhhhhhhHHHHHHHHHHHHHhhccchhhhhhhhHHHHHHHhhchhhhHHHHHHHHhcCHHHHHHHHH
Q 017811          178 RIGAADRRKMDGNALFKEEKLEEAMQQYEMAIAYMGDDFMFQLFGKYRDMALAVKNPCHLNMAACLLKLKRYEEAIGQCS  257 (365)
Q Consensus       178 ~~~~a~~~k~~G~~~~~~~~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~kl~~~~~A~~~~~  257 (365)
                      .+..+..++..|..|...++|.+|+..|++|+.+......     +.    ..-.+..+.|||..|.+.|+|.+|..+|+
T Consensus       237 hl~va~~l~~~a~~y~~~~k~~eAv~ly~~AL~i~e~~~G-----~~----h~~va~~l~nLa~ly~~~GKf~EA~~~~e  307 (508)
T KOG1840|consen  237 HLVVASMLNILALVYRSLGKYDEAVNLYEEALTIREEVFG-----ED----HPAVAATLNNLAVLYYKQGKFAEAEEYCE  307 (508)
T ss_pred             CHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHhcC-----CC----CHHHHHHHHHHHHHHhccCChHHHHHHHH
Confidence            3445556667999999999999999999999998863211     00    11135569999999999999999999999


Q ss_pred             HHHhCC--------CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-----CCc---HHHHHHHHHHHHHHHHHHHHH
Q 017811          258 LVLGED--------ENNVKALFRRGKARAELGQTDAAREDFLKAGKFA-----PED---KSIARELRLLAEHEKAVYKKQ  321 (365)
Q Consensus       258 ~aL~~~--------p~n~ka~~~~g~a~~~l~~~~~A~~~l~~al~l~-----P~n---~~~~~~l~~l~~~~~~~~~~~  321 (365)
                      .|+++-        |.-...+...+.++..++++++|...|++++++-     +.|   ..+...|+.+....+++.+++
T Consensus       308 ~Al~I~~~~~~~~~~~v~~~l~~~~~~~~~~~~~Eea~~l~q~al~i~~~~~g~~~~~~a~~~~nl~~l~~~~gk~~ea~  387 (508)
T KOG1840|consen  308 RALEIYEKLLGASHPEVAAQLSELAAILQSMNEYEEAKKLLQKALKIYLDAPGEDNVNLAKIYANLAELYLKMGKYKEAE  387 (508)
T ss_pred             HHHHHHHHhhccChHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhhccccchHHHHHHHHHHHHHHHhcchhHHH
Confidence            999763        3345688899999999999999999999999873     233   556777888888888877655


Q ss_pred             HHHHhcccCCCC
Q 017811          322 KEIYKGIFGPRP  333 (365)
Q Consensus       322 k~~y~kmf~~~~  333 (365)
                       .+|++.+....
T Consensus       388 -~~~k~ai~~~~  398 (508)
T KOG1840|consen  388 -ELYKKAIQILR  398 (508)
T ss_pred             -HHHHHHHHHHH
Confidence             45777755443

>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H

Probab=98.47  E-value=6.3e-07  Score=65.91  Aligned_cols=73  Identities=19%  Similarity=0.146  Sum_probs=59.3

Q ss_pred             HHHHHhhhhhhhhhhhhhHHHHHHHHHHHHHhhccchhhhhhhhHHHHHHHhhchhhhHHHHHHHHhcCHHHHHHHHHHH
Q 017811          180 GAADRRKMDGNALFKEEKLEEAMQQYEMAIAYMGDDFMFQLFGKYRDMALAVKNPCHLNMAACLLKLKRYEEAIGQCSLV  259 (365)
Q Consensus       180 ~~a~~~k~~G~~~~~~~~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~kl~~~~~A~~~~~~a  259 (365)
                      ..+..+...|..++..|+|++|+..|++|+.+.......          ......++.|+|.||..+|++++|+.+++++
T Consensus         3 ~~a~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~----------~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~a   72 (78)
T PF13424_consen    3 DTANAYNNLARVYRELGRYDEALDYYEKALDIEEQLGDD----------HPDTANTLNNLGECYYRLGDYEEALEYYQKA   72 (78)
T ss_dssp             HHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTTTH----------HHHHHHHHHHHHHHHHHTTHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHCCC----------CHHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence            467788999999999999999999999999884221110          1123567999999999999999999999999


Q ss_pred             HhC
Q 017811          260 LGE  262 (365)
Q Consensus       260 L~~  262 (365)
                      +++
T Consensus        73 l~i   75 (78)
T PF13424_consen   73 LDI   75 (78)
T ss_dssp             HHH
T ss_pred             Hhh
Confidence            975

...

>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala

Probab=98.44  E-value=1.8e-05  Score=78.80  Aligned_cols=98  Identities=14%  Similarity=0.127  Sum_probs=82.3

Q ss_pred             hhhHHHHHHHHhcCHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHH
Q 017811          235 CHLNMAACLLKLKRYEEAIGQCSLVLGEDENNVKALFRRGKARAELGQTDAAREDFLKAGKFAPEDKSIARELRLLAEHE  314 (365)
Q Consensus       235 ~~~nla~~~~kl~~~~~A~~~~~~aL~~~p~n~ka~~~~g~a~~~l~~~~~A~~~l~~al~l~P~n~~~~~~l~~l~~~~  314 (365)
                      +++.+|++|..+|++++|+.+.++||+..|..+..|+.+|++|.+.|++.+|...+..|..+|+.|.-+.....+...+-
T Consensus       196 ~~~~lAqhyd~~g~~~~Al~~Id~aI~htPt~~ely~~KarilKh~G~~~~Aa~~~~~Ar~LD~~DRyiNsK~aKy~LRa  275 (517)
T PF12569_consen  196 TLYFLAQHYDYLGDYEKALEYIDKAIEHTPTLVELYMTKARILKHAGDLKEAAEAMDEARELDLADRYINSKCAKYLLRA  275 (517)
T ss_pred             HHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhCChhhHHHHHHHHHHHHHC
Confidence            56888999999999999999999999999999999999999999999999999999999999999988887776665555


Q ss_pred             HHHHHHHHHHHhcccCCCCC
Q 017811          315 KAVYKKQKEIYKGIFGPRPE  334 (365)
Q Consensus       315 ~~~~~~~k~~y~kmf~~~~~  334 (365)
                      .+.+++++  --++|-+...
T Consensus       276 ~~~e~A~~--~~~~Ftr~~~  293 (517)
T PF12569_consen  276 GRIEEAEK--TASLFTREDV  293 (517)
T ss_pred             CCHHHHHH--HHHhhcCCCC
Confidence            54443333  2345555554

N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].

>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional

Probab=98.44  E-value=1.8e-06  Score=82.87  Aligned_cols=72  Identities=18%  Similarity=0.192  Sum_probs=63.5

Q ss_pred             HHHHHHHhhhhhhhhhhhhhHHHHHHHHHHHHHhhccchhhhhhhhHHHHHHHhhchhhhHHHHHHHHhcCHHHHHHHHH
Q 017811          178 RIGAADRRKMDGNALFKEEKLEEAMQQYEMAIAYMGDDFMFQLFGKYRDMALAVKNPCHLNMAACLLKLKRYEEAIGQCS  257 (365)
Q Consensus       178 ~~~~a~~~k~~G~~~~~~~~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~kl~~~~~A~~~~~  257 (365)
                      ..+.+..+.+.|..|++.|+|++|+..|++||++.|++...              ..+|+|+|.||.++|++++|+.++.
T Consensus        71 dP~~a~a~~NLG~AL~~lGryeEAIa~f~rALeL~Pd~aeA--------------~~A~yNLAcaya~LGr~dEAla~Lr  136 (453)
T PLN03098         71 DVKTAEDAVNLGLSLFSKGRVKDALAQFETALELNPNPDEA--------------QAAYYNKACCHAYREEGKKAADCLR  136 (453)
T ss_pred             CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCchHH--------------HHHHHHHHHHHHHcCCHHHHHHHHH
Confidence            34567889999999999999999999999999999986421              1359999999999999999999999


Q ss_pred             HHHhCC
Q 017811          258 LVLGED  263 (365)
Q Consensus       258 ~aL~~~  263 (365)
                      +||++.
T Consensus       137 rALels  142 (453)
T PLN03098        137 TALRDY  142 (453)
T ss_pred             HHHHhc
Confidence            999984

>KOG1129 consensus TPR repeat-containing protein [General function prediction only]

Probab=98.42  E-value=6.4e-07  Score=81.58  Aligned_cols=143  Identities=13%  Similarity=0.164  Sum_probs=108.0

Q ss_pred             hhhhhhhhhhhhhHHHHHHHHHHHHHhhccchhhhh-------hhhHHHH-------HHHhh---chhhhHHHHHHHHhc
Q 017811          185 RKMDGNALFKEEKLEEAMQQYEMAIAYMGDDFMFQL-------FGKYRDM-------ALAVK---NPCHLNMAACLLKLK  247 (365)
Q Consensus       185 ~k~~G~~~~~~~~y~~A~~~y~~al~~~~~~~~~~~-------~~~~~~~-------~~~~~---~~~~~nla~~~~kl~  247 (365)
                      +-.++..+-..+++++|+++|+.+++..|.+...--       -+...++       +..+.   ..+++|+|.|.+-.+
T Consensus       293 l~g~ARi~eam~~~~~a~~lYk~vlk~~~~nvEaiAcia~~yfY~~~PE~AlryYRRiLqmG~~speLf~NigLCC~yaq  372 (478)
T KOG1129|consen  293 LLGQARIHEAMEQQEDALQLYKLVLKLHPINVEAIACIAVGYFYDNNPEMALRYYRRILQMGAQSPELFCNIGLCCLYAQ  372 (478)
T ss_pred             hhhhHHHHHHHHhHHHHHHHHHHHHhcCCccceeeeeeeeccccCCChHHHHHHHHHHHHhcCCChHHHhhHHHHHHhhc
Confidence            445777777888889999999999888876543100       0011111       11111   357999999999999


Q ss_pred             CHHHHHHHHHHHHhCCC---CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHHHHHHHHHHHH
Q 017811          248 RYEEAIGQCSLVLGEDE---NNVKALFRRGKARAELGQTDAAREDFLKAGKFAPEDKSIARELRLLAEHEKAVYKKQKEI  324 (365)
Q Consensus       248 ~~~~A~~~~~~aL~~~p---~n~ka~~~~g~a~~~l~~~~~A~~~l~~al~l~P~n~~~~~~l~~l~~~~~~~~~~~k~~  324 (365)
                      +++-++..+.+|+..-.   .-...||++|.+....|++.-|..+|+-||..||++.++...|..+..+.++-. ..|..
T Consensus       373 Q~D~~L~sf~RAlstat~~~~aaDvWYNlg~vaV~iGD~nlA~rcfrlaL~~d~~h~ealnNLavL~~r~G~i~-~Arsl  451 (478)
T KOG1129|consen  373 QIDLVLPSFQRALSTATQPGQAADVWYNLGFVAVTIGDFNLAKRCFRLALTSDAQHGEALNNLAVLAARSGDIL-GARSL  451 (478)
T ss_pred             chhhhHHHHHHHHhhccCcchhhhhhhccceeEEeccchHHHHHHHHHHhccCcchHHHHHhHHHHHhhcCchH-HHHHH
Confidence            99999999999997543   346799999999999999999999999999999999999999999976655543 34454


Q ss_pred             Hhcc
Q 017811          325 YKGI  328 (365)
Q Consensus       325 y~km  328 (365)
                      +...
T Consensus       452 l~~A  455 (478)
T KOG1129|consen  452 LNAA  455 (478)
T ss_pred             HHHh
Confidence            5443

>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A

Probab=98.34  E-value=1.1e-06  Score=65.75  Aligned_cols=77  Identities=22%  Similarity=0.155  Sum_probs=68.1

Q ss_pred             hcCHHHHHHHHHHHHhCCCC--CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHHHHHHHHHHH
Q 017811          246 LKRYEEAIGQCSLVLGEDEN--NVKALFRRGKARAELGQTDAAREDFLKAGKFAPEDKSIARELRLLAEHEKAVYKKQKE  323 (365)
Q Consensus       246 l~~~~~A~~~~~~aL~~~p~--n~ka~~~~g~a~~~l~~~~~A~~~l~~al~l~P~n~~~~~~l~~l~~~~~~~~~~~k~  323 (365)
                      .++|+.|+..++++++.+|.  +...++.+|.||+.+|+|++|+..+++ +..+|.+..+...++.|...+++++++.+.
T Consensus         2 ~~~y~~Ai~~~~k~~~~~~~~~~~~~~~~la~~~~~~~~y~~A~~~~~~-~~~~~~~~~~~~l~a~~~~~l~~y~eAi~~   80 (84)
T PF12895_consen    2 QGNYENAIKYYEKLLELDPTNPNSAYLYNLAQCYFQQGKYEEAIELLQK-LKLDPSNPDIHYLLARCLLKLGKYEEAIKA   80 (84)
T ss_dssp             TT-HHHHHHHHHHHHHHHCGTHHHHHHHHHHHHHHHTTHHHHHHHHHHC-HTHHHCHHHHHHHHHHHHHHTT-HHHHHHH
T ss_pred             CccHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHCCCHHHHHHHHHH-hCCCCCCHHHHHHHHHHHHHhCCHHHHHHH
Confidence            57899999999999999995  466788899999999999999999999 999999999999999999999998877665

>PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production

Probab=98.33  E-value=2.1e-05  Score=65.16  Aligned_cols=113  Identities=22%  Similarity=0.173  Sum_probs=88.5

Q ss_pred             HHhhhhhhhhhhhhhHHHHHHHHHHHHHhhccchhhhhh-----hhHHHHHHHhhchhhhHHHHHHHHhcCHHHHHHHHH
Q 017811          183 DRRKMDGNALFKEEKLEEAMQQYEMAIAYMGDDFMFQLF-----GKYRDMALAVKNPCHLNMAACLLKLKRYEEAIGQCS  257 (365)
Q Consensus       183 ~~~k~~G~~~~~~~~y~~A~~~y~~al~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~nla~~~~kl~~~~~A~~~~~  257 (365)
                      ..+...|......++...++..|.+++.+...+...+..     ...+..+......+...++.++...|++++|+..|.
T Consensus         7 ~~~~~~a~~~~~~~~~~~~~~~~~~al~ly~G~~l~~~~~~~W~~~~r~~l~~~~~~~~~~l~~~~~~~~~~~~a~~~~~   86 (146)
T PF03704_consen    7 EALVREARAAARAGDPEEAIELLEEALALYRGDFLPDLDDEEWVEPERERLRELYLDALERLAEALLEAGDYEEALRLLQ   86 (146)
T ss_dssp             HHHHHHHHHHHHTT-HHHHHHHHHHHHTT--SSTTGGGTTSTTHHHHHHHHHHHHHHHHHHHHHHHHHTT-HHHHHHHHH
T ss_pred             HHHHHHHHHHHHCCCHHHHHHHHHHHHHHhCCCCCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHH
Confidence            344555667777788999999999999988664432222     244556677778889999999999999999999999


Q ss_pred             HHHhCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 017811          258 LVLGEDENNVKALFRRGKARAELGQTDAAREDFLKAGK  295 (365)
Q Consensus       258 ~aL~~~p~n~ka~~~~g~a~~~l~~~~~A~~~l~~al~  295 (365)
                      .++.++|-+..++..+-.+|..+|++.+|+..|.++..
T Consensus        87 ~~l~~dP~~E~~~~~lm~~~~~~g~~~~A~~~Y~~~~~  124 (146)
T PF03704_consen   87 RALALDPYDEEAYRLLMRALAAQGRRAEALRVYERYRR  124 (146)
T ss_dssp             HHHHHSTT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred             HHHhcCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHH
Confidence            99999999999999999999999999999999987754

It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A.

>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only]

Probab=98.32  E-value=8.1e-06  Score=78.23  Aligned_cols=107  Identities=24%  Similarity=0.186  Sum_probs=93.4

Q ss_pred             hhhhhhhhhhhHHHHHHHHHHHHHhhccchhhhhhhhHHHHHHHhhchhhhHHHHHHHHhcCHHHHHHHHHHHHhCCCCC
Q 017811          187 MDGNALFKEEKLEEAMQQYEMAIAYMGDDFMFQLFGKYRDMALAVKNPCHLNMAACLLKLKRYEEAIGQCSLVLGEDENN  266 (365)
Q Consensus       187 ~~G~~~~~~~~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~kl~~~~~A~~~~~~aL~~~p~n  266 (365)
                      ..|..+++.+++.+|++.+++++...|....                 +..|+|.+|++.|++.+|+...+..+..+|++
T Consensus       345 ~~~~i~~~~nk~~~A~e~~~kal~l~P~~~~-----------------l~~~~a~all~~g~~~eai~~L~~~~~~~p~d  407 (484)
T COG4783         345 LAGDILLEANKAKEAIERLKKALALDPNSPL-----------------LQLNLAQALLKGGKPQEAIRILNRYLFNDPED  407 (484)
T ss_pred             HHHHHHHHcCChHHHHHHHHHHHhcCCCccH-----------------HHHHHHHHHHhcCChHHHHHHHHHHhhcCCCC
Confidence            4777899999999999999999999998533                 48899999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCcHHHHHHHHHH
Q 017811          267 VKALFRRGKARAELGQTDAAREDFLKAGKFAPEDKSIARELRLL  310 (365)
Q Consensus       267 ~ka~~~~g~a~~~l~~~~~A~~~l~~al~l~P~n~~~~~~l~~l  310 (365)
                      +..|..+|++|..+|+-.+|...+-..+.+..+-..+...+...
T Consensus       408 p~~w~~LAqay~~~g~~~~a~~A~AE~~~~~G~~~~A~~~l~~A  451 (484)
T COG4783         408 PNGWDLLAQAYAELGNRAEALLARAEGYALAGRLEQAIIFLMRA  451 (484)
T ss_pred             chHHHHHHHHHHHhCchHHHHHHHHHHHHhCCCHHHHHHHHHHH
Confidence            99999999999999999888888888888876655555544444

>KOG3060 consensus Uncharacterized conserved protein [Function unknown]

Probab=98.31  E-value=2.2e-05  Score=69.49  Aligned_cols=131  Identities=18%  Similarity=0.099  Sum_probs=80.5

Q ss_pred             hhhhhhhhhhhhhHHHHHHHHHHHHHhhccchhhhh--------hhhHHHHHHH-------hh--chhhhHHHHHHHHhc
Q 017811          185 RKMDGNALFKEEKLEEAMQQYEMAIAYMGDDFMFQL--------FGKYRDMALA-------VK--NPCHLNMAACLLKLK  247 (365)
Q Consensus       185 ~k~~G~~~~~~~~y~~A~~~y~~al~~~~~~~~~~~--------~~~~~~~~~~-------~~--~~~~~nla~~~~kl~  247 (365)
                      .+-.|..+-..|+|++|+..|...|+-+|.+...-.        .++..+.+..       +.  ..++..+|..|+.+|
T Consensus        89 ~~lkam~lEa~~~~~~A~e~y~~lL~ddpt~~v~~KRKlAilka~GK~l~aIk~ln~YL~~F~~D~EAW~eLaeiY~~~~  168 (289)
T KOG3060|consen   89 GKLKAMLLEATGNYKEAIEYYESLLEDDPTDTVIRKRKLAILKAQGKNLEAIKELNEYLDKFMNDQEAWHELAEIYLSEG  168 (289)
T ss_pred             HHHHHHHHHHhhchhhHHHHHHHHhccCcchhHHHHHHHHHHHHcCCcHHHHHHHHHHHHHhcCcHHHHHHHHHHHHhHh
Confidence            345677788899999999999999998887643200        0111111111       11  135666677777777


Q ss_pred             CHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHcCC---HHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHHH
Q 017811          248 RYEEAIGQCSLVLGEDENNVKALFRRGKARAELGQ---TDAAREDFLKAGKFAPEDKSIARELRLLAEHEK  315 (365)
Q Consensus       248 ~~~~A~~~~~~aL~~~p~n~ka~~~~g~a~~~l~~---~~~A~~~l~~al~l~P~n~~~~~~l~~l~~~~~  315 (365)
                      +|.+|+-++++++-+.|.|+-.+-|+|.+++-+|-   +.-|.++|.++++++|.|......+-.|-..+.
T Consensus       169 ~f~kA~fClEE~ll~~P~n~l~f~rlae~~Yt~gg~eN~~~arkyy~~alkl~~~~~ral~GI~lc~~~la  239 (289)
T KOG3060|consen  169 DFEKAAFCLEELLLIQPFNPLYFQRLAEVLYTQGGAENLELARKYYERALKLNPKNLRALFGIYLCGSALA  239 (289)
T ss_pred             HHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhChHhHHHHHHHHHHHHHHH
Confidence            77777777777777777777666677766666543   455666777777776655555444444443333

>PRK10803 tol-pal system protein YbgF; Provisional

Probab=98.31  E-value=4.4e-06  Score=76.26  Aligned_cols=104  Identities=17%  Similarity=0.201  Sum_probs=85.2

Q ss_pred             hhhhHHHHHH-HHhcCHHHHHHHHHHHHhCCCCC---HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCc---HHHHHH
Q 017811          234 PCHLNMAACL-LKLKRYEEAIGQCSLVLGEDENN---VKALFRRGKARAELGQTDAAREDFLKAGKFAPED---KSIARE  306 (365)
Q Consensus       234 ~~~~nla~~~-~kl~~~~~A~~~~~~aL~~~p~n---~ka~~~~g~a~~~l~~~~~A~~~l~~al~l~P~n---~~~~~~  306 (365)
                      ...++.|..+ ++.|+|++|+..|...+...|++   +.++|++|.+|+..|+|++|+..|++++...|++   .++...
T Consensus       143 ~~~Y~~A~~l~~~~~~y~~Ai~af~~fl~~yP~s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~yP~s~~~~dAl~k  222 (263)
T PRK10803        143 NTDYNAAIALVQDKSRQDDAIVAFQNFVKKYPDSTYQPNANYWLGQLNYNKGKKDDAAYYFASVVKNYPKSPKAADAMFK  222 (263)
T ss_pred             HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhHHHHH
Confidence            3578888887 66799999999999999999998   5899999999999999999999999999999985   556666


Q ss_pred             HHHHHHHHHHHHHHHHHHHhcccCCCCCcccc
Q 017811          307 LRLLAEHEKAVYKKQKEIYKGIFGPRPEPKQK  338 (365)
Q Consensus       307 l~~l~~~~~~~~~~~k~~y~kmf~~~~~~~~~  338 (365)
                      ++.+...+++ ..+.+..|..+...-|+....
T Consensus       223 lg~~~~~~g~-~~~A~~~~~~vi~~yP~s~~a  253 (263)
T PRK10803        223 VGVIMQDKGD-TAKAKAVYQQVIKKYPGTDGA  253 (263)
T ss_pred             HHHHHHHcCC-HHHHHHHHHHHHHHCcCCHHH
Confidence            6666655544 446667788888777765543

>TIGR00540 hemY_coli hemY protein

Probab=98.30  E-value=3e-05  Score=75.75  Aligned_cols=138  Identities=12%  Similarity=0.021  Sum_probs=103.4

Q ss_pred             HHHHHHHHHhhhhhhhhhhhhhHHHHHHHHHHHHHhhccchhhhhhhhHHHHHHHhhchhhhHHHHHHHHhcCHHHHHHH
Q 017811          176 EERIGAADRRKMDGNALFKEEKLEEAMQQYEMAIAYMGDDFMFQLFGKYRDMALAVKNPCHLNMAACLLKLKRYEEAIGQ  255 (365)
Q Consensus       176 ~e~~~~a~~~k~~G~~~~~~~~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~kl~~~~~A~~~  255 (365)
                      ..+.+.+...-.+|-..+..|+|..|.+...++.+..|....                 .+.-.|.++..+|+++.|..+
T Consensus        78 ~r~~~k~~~~~~~glla~~~g~~~~A~~~l~~~~~~~~~~~~-----------------~~llaA~aa~~~g~~~~A~~~  140 (409)
T TIGR00540        78 GRKRRKAQKQTEEALLKLAEGDYAKAEKLIAKNADHAAEPVL-----------------NLIKAAEAAQQRGDEARANQH  140 (409)
T ss_pred             HHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHhhcCCCCHH-----------------HHHHHHHHHHHCCCHHHHHHH
Confidence            345667788888999999999999999999999988776422                 255667777788888888888


Q ss_pred             HHHHHhCCCCCH-HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHHHHHHHHHHHHHhcccCC
Q 017811          256 CSLVLGEDENNV-KALFRRGKARAELGQTDAAREDFLKAGKFAPEDKSIARELRLLAEHEKAVYKKQKEIYKGIFGP  331 (365)
Q Consensus       256 ~~~aL~~~p~n~-ka~~~~g~a~~~l~~~~~A~~~l~~al~l~P~n~~~~~~l~~l~~~~~~~~~~~k~~y~kmf~~  331 (365)
                      +.++++..|++. .+...++.+++..|+++.|+..+++.++..|+|+.+...+..+....++..+.. ..+..+.+.
T Consensus       141 l~~a~~~~p~~~l~~~~~~a~l~l~~~~~~~Al~~l~~l~~~~P~~~~~l~ll~~~~~~~~d~~~a~-~~l~~l~k~  216 (409)
T TIGR00540       141 LEEAAELAGNDNILVEIARTRILLAQNELHAARHGVDKLLEMAPRHKEVLKLAEEAYIRSGAWQALD-DIIDNMAKA  216 (409)
T ss_pred             HHHHHHhCCcCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhhHHHHH-HHHHHHHHc
Confidence            888887777764 344446888888888888888888888888888888877777777776665433 335555444

This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.

>COG0544 Tig FKBP-type peptidyl-prolyl cis-trans isomerase (trigger factor) [Posttranslational modification, protein turnover, chaperones]

Probab=98.30  E-value=4.1e-06  Score=81.60  Aligned_cols=87  Identities=15%  Similarity=0.274  Sum_probs=70.1

Q ss_pred             CCCCCEEEEEEEEEEcCCCeeeccCcCCCCcceeecCCCCchhhhHHHHHhcCCcCcEEEEEeccccccCCCCCCCCCCC
Q 017811           67 PSKYSTCFLHYRAWAESTRHKFDDTWLEQQPLEMVLGKEKKEMTGLAIGVSSMKAGEHALLHVGWELGYGKEGSFSFPNV  146 (365)
Q Consensus        67 p~~g~~v~v~y~~~~~~~g~~fd~s~~~~~p~~f~lg~~~~~i~g~e~~l~~Mk~GE~~~~~i~~~~~yg~~g~~~~~~i  146 (365)
                      ...||.|+|+|.|+..  |..|.+.  ..+.+.|.||.| ++||||+.+|.||++|+...|.+.....|.....      
T Consensus       158 a~~gD~v~IDf~g~iD--g~~fegg--~ae~~~l~lGs~-~fipgFe~~LvG~k~Ge~k~i~vtFP~dy~a~~L------  226 (441)
T COG0544         158 AENGDRVTIDFEGSVD--GEEFEGG--KAENFSLELGSG-RFIPGFEDQLVGMKAGEEKDIKVTFPEDYHAEEL------  226 (441)
T ss_pred             cccCCEEEEEEEEEEc--CeeccCc--cccCeEEEEcCC-CchhhHHhhhccCcCCCeeEEEEEcccccchhHh------
Confidence            7789999999999763  7888774  356799999999 9999999999999999998876655544543322      


Q ss_pred             CCCCcEEEEEEEEeeecCc
Q 017811          147 SPMADLVYEVVLIGFDETK  165 (365)
Q Consensus       147 p~~~~l~~~iel~~~~~~~  165 (365)
                       .|....|.|.+..+....
T Consensus       227 -aGK~a~F~V~vkeVk~~e  244 (441)
T COG0544         227 -AGKEATFKVKVKEVKKRE  244 (441)
T ss_pred             -CCCceEEEEEEEEEeecC
Confidence             567889999999887664

>KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics]

Probab=98.28  E-value=1.6e-05  Score=78.36  Aligned_cols=120  Identities=15%  Similarity=0.052  Sum_probs=106.7

Q ss_pred             HhhhhhhhhhhhhhHHHHHHHHHHHHHhhccchhhhhhhhHHHHHHHhhchhhhHHHHHHHHhcCHHHHHHHHHHHHhCC
Q 017811          184 RRKMDGNALFKEEKLEEAMQQYEMAIAYMGDDFMFQLFGKYRDMALAVKNPCHLNMAACLLKLKRYEEAIGQCSLVLGED  263 (365)
Q Consensus       184 ~~k~~G~~~~~~~~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~kl~~~~~A~~~~~~aL~~~  263 (365)
                      .+..+...+|..++|...++..+..|.-.|.+.+.                 +.-.|..+..+|+-++|...+..++..|
T Consensus         9 ~lF~~~lk~yE~kQYkkgLK~~~~iL~k~~eHges-----------------lAmkGL~L~~lg~~~ea~~~vr~glr~d   71 (700)
T KOG1156|consen    9 ALFRRALKCYETKQYKKGLKLIKQILKKFPEHGES-----------------LAMKGLTLNCLGKKEEAYELVRLGLRND   71 (700)
T ss_pred             HHHHHHHHHHHHHHHHhHHHHHHHHHHhCCccchh-----------------HHhccchhhcccchHHHHHHHHHHhccC
Confidence            45566777889999999999999999988876442                 6667888999999999999999999999


Q ss_pred             CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHHHHHHHH
Q 017811          264 ENNVKALFRRGKARAELGQTDAAREDFLKAGKFAPEDKSIARELRLLAEHEKAVYKK  320 (365)
Q Consensus       264 p~n~ka~~~~g~a~~~l~~~~~A~~~l~~al~l~P~n~~~~~~l~~l~~~~~~~~~~  320 (365)
                      +.+.-+|.-+|..+..-.+|++|+++|+.|+.++|+|..+.+.+..++..++++.--
T Consensus        72 ~~S~vCwHv~gl~~R~dK~Y~eaiKcy~nAl~~~~dN~qilrDlslLQ~QmRd~~~~  128 (700)
T KOG1156|consen   72 LKSHVCWHVLGLLQRSDKKYDEAIKCYRNALKIEKDNLQILRDLSLLQIQMRDYEGY  128 (700)
T ss_pred             cccchhHHHHHHHHhhhhhHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHhhhhH
Confidence            999999999999999999999999999999999999999999999998877776543

>PRK10747 putative protoheme IX biogenesis protein; Provisional

Probab=98.28  E-value=3.9e-05  Score=74.68  Aligned_cols=140  Identities=11%  Similarity=-0.000  Sum_probs=106.7

Q ss_pred             HHHHHHHHHhhhhhhhhhhhhhHHHHHHHHHHHHHhhccchhhhhhhhHHHHHHHhhchhhhHHHHHHHHhcCHHHHHHH
Q 017811          176 EERIGAADRRKMDGNALFKEEKLEEAMQQYEMAIAYMGDDFMFQLFGKYRDMALAVKNPCHLNMAACLLKLKRYEEAIGQ  255 (365)
Q Consensus       176 ~e~~~~a~~~k~~G~~~~~~~~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~kl~~~~~A~~~  255 (365)
                      ..+.+.+......|-..+..|+|..|.+...++-+..+.. ..                .|...|.+..+.|+++.|..+
T Consensus        78 ~rr~~~~~~~~~~gl~a~~eGd~~~A~k~l~~~~~~~~~p-~l----------------~~llaA~aA~~~g~~~~A~~~  140 (398)
T PRK10747         78 GRKRRRARKQTEQALLKLAEGDYQQVEKLMTRNADHAEQP-VV----------------NYLLAAEAAQQRGDEARANQH  140 (398)
T ss_pred             HHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcccch-HH----------------HHHHHHHHHHHCCCHHHHHHH
Confidence            3466678888899999999999999997776655543221 10                144446666899999999999


Q ss_pred             HHHHHhCCCCCHH-HHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCC
Q 017811          256 CSLVLGEDENNVK-ALFRRGKARAELGQTDAAREDFLKAGKFAPEDKSIARELRLLAEHEKAVYKKQKEIYKGIFGPRP  333 (365)
Q Consensus       256 ~~~aL~~~p~n~k-a~~~~g~a~~~l~~~~~A~~~l~~al~l~P~n~~~~~~l~~l~~~~~~~~~~~k~~y~kmf~~~~  333 (365)
                      +.++.+.+|++.- .....+..+...|+++.|+..+++.++.+|+|+.+...+..++...++..+.. ..+..+-+...
T Consensus       141 l~~A~~~~~~~~~~~~l~~a~l~l~~g~~~~Al~~l~~~~~~~P~~~~al~ll~~~~~~~gdw~~a~-~~l~~l~k~~~  218 (398)
T PRK10747        141 LERAAELADNDQLPVEITRVRIQLARNENHAARHGVDKLLEVAPRHPEVLRLAEQAYIRTGAWSSLL-DILPSMAKAHV  218 (398)
T ss_pred             HHHHHhcCCcchHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhHHHHH-HHHHHHHHcCC
Confidence            9999999998854 44566999999999999999999999999999999999998888777765543 33555544433

>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals

Probab=98.27  E-value=8.3e-06  Score=77.73  Aligned_cols=99  Identities=15%  Similarity=-0.001  Sum_probs=86.6

Q ss_pred             HHhhhhhhhhhhhhhHHHHHHHHHHHHHhhccchhhhhhhhHHHHHHHhhchhhhHHHHHHHHhcCHHHHHHHHHHHHhC
Q 017811          183 DRRKMDGNALFKEEKLEEAMQQYEMAIAYMGDDFMFQLFGKYRDMALAVKNPCHLNMAACLLKLKRYEEAIGQCSLVLGE  262 (365)
Q Consensus       183 ~~~k~~G~~~~~~~~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~kl~~~~~A~~~~~~aL~~  262 (365)
                      ..+...|..+...|++.+|+..|++++...|.+..                 ++..+|.++...|++++|+..+.+++..
T Consensus       115 ~~~~~~a~~~~~~G~~~~A~~~~~~al~~~p~~~~-----------------~~~~la~i~~~~g~~~eA~~~l~~~l~~  177 (355)
T cd05804         115 YLLGMLAFGLEEAGQYDRAEEAARRALELNPDDAW-----------------AVHAVAHVLEMQGRFKEGIAFMESWRDT  177 (355)
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCcH-----------------HHHHHHHHHHHcCCHHHHHHHHHhhhhc
Confidence            34456778899999999999999999999998633                 4889999999999999999999999998


Q ss_pred             CCCCH----HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC
Q 017811          263 DENNV----KALFRRGKARAELGQTDAAREDFLKAGKFAP  298 (365)
Q Consensus       263 ~p~n~----ka~~~~g~a~~~l~~~~~A~~~l~~al~l~P  298 (365)
                      .|.+.    ..++.+|.++..+|++++|+..|++++...|
T Consensus       178 ~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~~~~~~~  217 (355)
T cd05804         178 WDCSSMLRGHNWWHLALFYLERGDYEAALAIYDTHIAPSA  217 (355)
T ss_pred             cCCCcchhHHHHHHHHHHHHHCCCHHHHHHHHHHHhcccc
Confidence            87432    4567899999999999999999999987777

A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.

>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]

Probab=98.26  E-value=1.8e-05  Score=72.24  Aligned_cols=124  Identities=15%  Similarity=0.067  Sum_probs=103.1

Q ss_pred             HhhhhhhhhhhhhhHHHHHHHHHHHHHhhccchhhhhhhhHHHHHHHhhchhhhHHHHHHHHhcCHHHHHHHHHHHHhCC
Q 017811          184 RRKMDGNALFKEEKLEEAMQQYEMAIAYMGDDFMFQLFGKYRDMALAVKNPCHLNMAACLLKLKRYEEAIGQCSLVLGED  263 (365)
Q Consensus       184 ~~k~~G~~~~~~~~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~kl~~~~~A~~~~~~aL~~~  263 (365)
                      .+...-+.|-...+|++||..-++...+.+.+..++            ....|+.||..++...+++.|.....+|++.|
T Consensus       143 AlqqLl~IYQ~treW~KAId~A~~L~k~~~q~~~~e------------IAqfyCELAq~~~~~~~~d~A~~~l~kAlqa~  210 (389)
T COG2956         143 ALQQLLNIYQATREWEKAIDVAERLVKLGGQTYRVE------------IAQFYCELAQQALASSDVDRARELLKKALQAD  210 (389)
T ss_pred             HHHHHHHHHHHhhHHHHHHHHHHHHHHcCCccchhH------------HHHHHHHHHHHHhhhhhHHHHHHHHHHHHhhC
Confidence            344566778888999999999998888887765432            24568999999999999999999999999999


Q ss_pred             CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCc-HHHHHHHHHHHHHHHHHHH
Q 017811          264 ENNVKALFRRGKARAELGQTDAAREDFLKAGKFAPED-KSIARELRLLAEHEKAVYK  319 (365)
Q Consensus       264 p~n~ka~~~~g~a~~~l~~~~~A~~~l~~al~l~P~n-~~~~~~l~~l~~~~~~~~~  319 (365)
                      |+++.|-..+|++++..|+|..|++.++.+++-+|.. +++...|..|+..+.+-.+
T Consensus       211 ~~cvRAsi~lG~v~~~~g~y~~AV~~~e~v~eQn~~yl~evl~~L~~~Y~~lg~~~~  267 (389)
T COG2956         211 KKCVRASIILGRVELAKGDYQKAVEALERVLEQNPEYLSEVLEMLYECYAQLGKPAE  267 (389)
T ss_pred             ccceehhhhhhHHHHhccchHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHhCCHHH
Confidence            9999999999999999999999999999999999975 5677777777776665444

>PRK10153 DNA-binding transcriptional activator CadC; Provisional

Probab=98.25  E-value=2.2e-05  Score=78.49  Aligned_cols=120  Identities=14%  Similarity=0.019  Sum_probs=84.4

Q ss_pred             HHHhhhhhhhhhhh---hhHHHHHHHHHHHHHhhccchhh--h----------hh---hhH----HHHHHH--------h
Q 017811          182 ADRRKMDGNALFKE---EKLEEAMQQYEMAIAYMGDDFMF--Q----------LF---GKY----RDMALA--------V  231 (365)
Q Consensus       182 a~~~k~~G~~~~~~---~~y~~A~~~y~~al~~~~~~~~~--~----------~~---~~~----~~~~~~--------~  231 (365)
                      |-.+.-+|..++..   +.+..|+.+|++|+++.|+....  .          ..   +..    ......        .
T Consensus       339 Ay~~~lrg~~~~~~~~~~~~~~A~~lle~Ai~ldP~~a~a~A~la~~~~~~~~~~~~~~~~l~~a~~~~~~a~al~~~~~  418 (517)
T PRK10153        339 ALTLFYQAHHYLNSGDAKSLNKASDLLEEILKSEPDFTYAQAEKALADIVRHSQQPLDEKQLAALSTELDNIVALPELNV  418 (517)
T ss_pred             HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHhhhcccCcC
Confidence            44555677777654   44889999999999999985321  0          00   000    000000        0


Q ss_pred             hchhhhHHHHHHHHhcCHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCcHH
Q 017811          232 KNPCHLNMAACLLKLKRYEEAIGQCSLVLGEDENNVKALFRRGKARAELGQTDAAREDFLKAGKFAPEDKS  302 (365)
Q Consensus       232 ~~~~~~nla~~~~kl~~~~~A~~~~~~aL~~~p~n~ka~~~~g~a~~~l~~~~~A~~~l~~al~l~P~n~~  302 (365)
                      ...+|.-+|..+...|++++|...+++|+.++| +..+|+.+|+++...|++++|...|++|+.++|.++.
T Consensus       419 ~~~~~~ala~~~~~~g~~~~A~~~l~rAl~L~p-s~~a~~~lG~~~~~~G~~~eA~~~~~~A~~L~P~~pt  488 (517)
T PRK10153        419 LPRIYEILAVQALVKGKTDEAYQAINKAIDLEM-SWLNYVLLGKVYELKGDNRLAADAYSTAFNLRPGENT  488 (517)
T ss_pred             ChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCch
Confidence            113466677777788888888888888888888 5788888888888888888888888888888888764

>PRK14574 hmsH outer membrane protein; Provisional

Probab=98.23  E-value=1.5e-05  Score=83.66  Aligned_cols=112  Identities=10%  Similarity=0.033  Sum_probs=92.2

Q ss_pred             HhhhhhhhhhhhhhHHHHHHHHHHHHHhhccchhhhhhhhHHHHHHHhhchhhhHHHHHHHHhcCHHHHHHHHHHHHhCC
Q 017811          184 RRKMDGNALFKEEKLEEAMQQYEMAIAYMGDDFMFQLFGKYRDMALAVKNPCHLNMAACLLKLKRYEEAIGQCSLVLGED  263 (365)
Q Consensus       184 ~~k~~G~~~~~~~~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~kl~~~~~A~~~~~~aL~~~  263 (365)
                      .+...|..+...|+|.+|+..|+++++..|.+..                 ++.-++.+|...+++++|+..+.+++..+
T Consensus       104 ~llalA~ly~~~gdyd~Aiely~kaL~~dP~n~~-----------------~l~gLa~~y~~~~q~~eAl~~l~~l~~~d  166 (822)
T PRK14574        104 GLASAARAYRNEKRWDQALALWQSSLKKDPTNPD-----------------LISGMIMTQADAGRGGVVLKQATELAERD  166 (822)
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHH-----------------HHHHHHHHHhhcCCHHHHHHHHHHhcccC
Confidence            3444577888899999999999999999999744                 36678999999999999999999999999


Q ss_pred             CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHH
Q 017811          264 ENNVKALFRRGKARAELGQTDAAREDFLKAGKFAPEDKSIARELRLLAEH  313 (365)
Q Consensus       264 p~n~ka~~~~g~a~~~l~~~~~A~~~l~~al~l~P~n~~~~~~l~~l~~~  313 (365)
                      |.+... .-++.++..++++.+|+..|+++++++|++.++...+-.+...
T Consensus       167 p~~~~~-l~layL~~~~~~~~~AL~~~ekll~~~P~n~e~~~~~~~~l~~  215 (822)
T PRK14574        167 PTVQNY-MTLSYLNRATDRNYDALQASSEAVRLAPTSEEVLKNHLEILQR  215 (822)
T ss_pred             cchHHH-HHHHHHHHhcchHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Confidence            985554 4445555557778779999999999999999887776655443

>TIGR00540 hemY_coli hemY protein

Probab=98.21  E-value=1.2e-05  Score=78.44  Aligned_cols=132  Identities=12%  Similarity=0.009  Sum_probs=103.1

Q ss_pred             HHHHhhhhhhhhhhhhhHHHHHHHHHHHHHhhccchhhhhhhhHHHHHHHhhchhhhHHHHHHHHhcCHHHHHHHHHHHH
Q 017811          181 AADRRKMDGNALFKEEKLEEAMQQYEMAIAYMGDDFMFQLFGKYRDMALAVKNPCHLNMAACLLKLKRYEEAIGQCSLVL  260 (365)
Q Consensus       181 ~a~~~k~~G~~~~~~~~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~kl~~~~~A~~~~~~aL  260 (365)
                      ........|..+...|+++.|+....++++..|++....               ...-+....+..++...++..+++++
T Consensus       262 ~~~l~~~~a~~l~~~g~~~~A~~~l~~~l~~~pd~~~~~---------------~~~l~~~~~l~~~~~~~~~~~~e~~l  326 (409)
T TIGR00540       262 NIALKIALAEHLIDCDDHDSAQEIIFDGLKKLGDDRAIS---------------LPLCLPIPRLKPEDNEKLEKLIEKQA  326 (409)
T ss_pred             CHHHHHHHHHHHHHCCChHHHHHHHHHHHhhCCCcccch---------------hHHHHHhhhcCCCChHHHHHHHHHHH
Confidence            445556678889999999999999999999999863210               01222333445678899999999999


Q ss_pred             hCCCCCH--HHHHHHHHHHHHcCCHHHHHHHHH--HHHhhCCCcHHHHHHHHHHHHHHHHHHHHHHHHHhccc
Q 017811          261 GEDENNV--KALFRRGKARAELGQTDAAREDFL--KAGKFAPEDKSIARELRLLAEHEKAVYKKQKEIYKGIF  329 (365)
Q Consensus       261 ~~~p~n~--ka~~~~g~a~~~l~~~~~A~~~l~--~al~l~P~n~~~~~~l~~l~~~~~~~~~~~k~~y~kmf  329 (365)
                      +.+|+|+  ..+..+|.+++..|+|++|...|+  .+++.+|++.... .+..+....++..+ .+.+|++-+
T Consensus       327 k~~p~~~~~~ll~sLg~l~~~~~~~~~A~~~le~a~a~~~~p~~~~~~-~La~ll~~~g~~~~-A~~~~~~~l  397 (409)
T TIGR00540       327 KNVDDKPKCCINRALGQLLMKHGEFIEAADAFKNVAACKEQLDANDLA-MAADAFDQAGDKAE-AAAMRQDSL  397 (409)
T ss_pred             HhCCCChhHHHHHHHHHHHHHcccHHHHHHHHHHhHHhhcCCCHHHHH-HHHHHHHHcCCHHH-HHHHHHHHH
Confidence            9999999  888899999999999999999999  6888999876644 88888777777544 466677643

This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.

>PF12688 TPR_5: Tetratrico peptide repeat

Probab=98.21  E-value=2.5e-05  Score=62.48  Aligned_cols=89  Identities=20%  Similarity=0.090  Sum_probs=75.4

Q ss_pred             hhhHHHHHHHHhcCHHHHHHHHHHHHhCCCCC---HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC---cHHHHHHHH
Q 017811          235 CHLNMAACLLKLKRYEEAIGQCSLVLGEDENN---VKALFRRGKARAELGQTDAAREDFLKAGKFAPE---DKSIARELR  308 (365)
Q Consensus       235 ~~~nla~~~~kl~~~~~A~~~~~~aL~~~p~n---~ka~~~~g~a~~~l~~~~~A~~~l~~al~l~P~---n~~~~~~l~  308 (365)
                      +.+++|.++-.+|+.++|+..|++++......   ..++..+|.++..+|++++|+..|++++.-.|+   +..+...+.
T Consensus         3 ~~~~~A~a~d~~G~~~~Ai~~Y~~Al~~gL~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~~~p~~~~~~~l~~f~A   82 (120)
T PF12688_consen    3 ALYELAWAHDSLGREEEAIPLYRRALAAGLSGADRRRALIQLASTLRNLGRYDEALALLEEALEEFPDDELNAALRVFLA   82 (120)
T ss_pred             hHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHH
Confidence            58899999999999999999999999975444   679999999999999999999999999999898   777777777


Q ss_pred             HHHHHHHHHHHHHHH
Q 017811          309 LLAEHEKAVYKKQKE  323 (365)
Q Consensus       309 ~l~~~~~~~~~~~k~  323 (365)
                      .+....++.++....
T Consensus        83 l~L~~~gr~~eAl~~   97 (120)
T PF12688_consen   83 LALYNLGRPKEALEW   97 (120)
T ss_pred             HHHHHCCCHHHHHHH
Confidence            666665655554444

>PRK11906 transcriptional regulator; Provisional

Probab=98.21  E-value=1.7e-05  Score=76.27  Aligned_cols=123  Identities=15%  Similarity=0.121  Sum_probs=97.1

Q ss_pred             HHHHHHHHHHHH---HhhccchhhhhhhhHHHHHHHhhchhhhHHHHHHHHh---------cCHHHHHHHHHHHHhCCCC
Q 017811          198 LEEAMQQYEMAI---AYMGDDFMFQLFGKYRDMALAVKNPCHLNMAACLLKL---------KRYEEAIGQCSLVLGEDEN  265 (365)
Q Consensus       198 y~~A~~~y~~al---~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~kl---------~~~~~A~~~~~~aL~~~p~  265 (365)
                      ...|+.++.+|+   .+.|..                 ..+|.-+|.||+..         .+-.+|.....+|+++||.
T Consensus       274 ~~~Al~lf~ra~~~~~ldp~~-----------------a~a~~~lA~~h~~~~~~g~~~~~~~~~~a~~~A~rAveld~~  336 (458)
T PRK11906        274 IYRAMTIFDRLQNKSDIQTLK-----------------TECYCLLAECHMSLALHGKSELELAAQKALELLDYVSDITTV  336 (458)
T ss_pred             HHHHHHHHHHHhhcccCCccc-----------------HHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHhcCCC
Confidence            457888888998   666553                 44688889998876         2456788899999999999


Q ss_pred             CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCCCcccc
Q 017811          266 NVKALFRRGKARAELGQTDAAREDFLKAGKFAPEDKSIARELRLLAEHEKAVYKKQKEIYKGIFGPRPEPKQK  338 (365)
Q Consensus       266 n~ka~~~~g~a~~~l~~~~~A~~~l~~al~l~P~n~~~~~~l~~l~~~~~~~~~~~k~~y~kmf~~~~~~~~~  338 (365)
                      ++.|++.+|.++...++++.|...|++|+.++|+...+....+.+...-++.. .......+.+..+|--...
T Consensus       337 Da~a~~~~g~~~~~~~~~~~a~~~f~rA~~L~Pn~A~~~~~~~~~~~~~G~~~-~a~~~i~~alrLsP~~~~~  408 (458)
T PRK11906        337 DGKILAIMGLITGLSGQAKVSHILFEQAKIHSTDIASLYYYRALVHFHNEKIE-EARICIDKSLQLEPRRRKA  408 (458)
T ss_pred             CHHHHHHHHHHHHhhcchhhHHHHHHHHhhcCCccHHHHHHHHHHHHHcCCHH-HHHHHHHHHhccCchhhHH
Confidence            99999999999999999999999999999999999999988888765555544 3444577777777644433

>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]

Probab=98.21  E-value=2.9e-06  Score=51.72  Aligned_cols=33  Identities=27%  Similarity=0.477  Sum_probs=21.8

Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCc
Q 017811          268 KALFRRGKARAELGQTDAAREDFLKAGKFAPED  300 (365)
Q Consensus       268 ka~~~~g~a~~~l~~~~~A~~~l~~al~l~P~n  300 (365)
                      ++|+++|.+|..+|++++|+..|++|++++|+|
T Consensus         2 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~   34 (34)
T PF00515_consen    2 EAYYNLGNAYFQLGDYEEALEYYQRALELDPDN   34 (34)
T ss_dssp             HHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTTH
T ss_pred             HHHHHHHHHHHHhCCchHHHHHHHHHHHHCcCC
Confidence            566677777777777777777777777776653

It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....

>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A

Probab=98.20  E-value=1.4e-05  Score=74.09  Aligned_cols=110  Identities=22%  Similarity=0.178  Sum_probs=86.0

Q ss_pred             HHHHHhhhhhhhhhhh-hhHHHHHHHHHHHHHhhccchhhhhhhhHHHHHHHhhchhhhHHHHHHHHhcCHHHHHHHHHH
Q 017811          180 GAADRRKMDGNALFKE-EKLEEAMQQYEMAIAYMGDDFMFQLFGKYRDMALAVKNPCHLNMAACLLKLKRYEEAIGQCSL  258 (365)
Q Consensus       180 ~~a~~~k~~G~~~~~~-~~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~kl~~~~~A~~~~~~  258 (365)
                      ..|..+...|..+... ++++.|+..|++|+.+......           ......++.++|.++.++++|++|+..|.+
T Consensus       112 ~aA~~~~~lA~~ye~~~~d~e~Ai~~Y~~A~~~y~~e~~-----------~~~a~~~~~~~A~l~~~l~~y~~A~~~~e~  180 (282)
T PF14938_consen  112 QAAKCLKELAEIYEEQLGDYEKAIEYYQKAAELYEQEGS-----------PHSAAECLLKAADLYARLGRYEEAIEIYEE  180 (282)
T ss_dssp             HHHHHHHHHHHHHCCTT--HHHHHHHHHHHHHHHHHTT------------HHHHHHHHHHHHHHHHHTT-HHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCC-----------hhhHHHHHHHHHHHHHHhCCHHHHHHHHHH
Confidence            4566777888888888 9999999999999999765321           122356789999999999999999999999


Q ss_pred             HHhCCCC------CHH-HHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCc
Q 017811          259 VLGEDEN------NVK-ALFRRGKARAELGQTDAAREDFLKAGKFAPED  300 (365)
Q Consensus       259 aL~~~p~------n~k-a~~~~g~a~~~l~~~~~A~~~l~~al~l~P~n  300 (365)
                      +....-+      +++ .+++.+.|++..|++..|...|++....+|.-
T Consensus       181 ~~~~~l~~~l~~~~~~~~~l~a~l~~L~~~D~v~A~~~~~~~~~~~~~F  229 (282)
T PF14938_consen  181 VAKKCLENNLLKYSAKEYFLKAILCHLAMGDYVAARKALERYCSQDPSF  229 (282)
T ss_dssp             HHHTCCCHCTTGHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHGTTSTTS
T ss_pred             HHHHhhcccccchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC
Confidence            8864321      344 55788999999999999999999999999964

>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional

Probab=98.19  E-value=2e-05  Score=82.31  Aligned_cols=135  Identities=14%  Similarity=0.104  Sum_probs=98.1

Q ss_pred             HhhhhhhhhhhhhhHHHHHHHHHHHHHhhccchhhhhhhhHHHHHHHhh--chhhhHHHHHHHHhcCHHHHHHHHHHHHh
Q 017811          184 RRKMDGNALFKEEKLEEAMQQYEMAIAYMGDDFMFQLFGKYRDMALAVK--NPCHLNMAACLLKLKRYEEAIGQCSLVLG  261 (365)
Q Consensus       184 ~~k~~G~~~~~~~~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~--~~~~~nla~~~~kl~~~~~A~~~~~~aL~  261 (365)
                      .+.-.|..++..+++..|...  .++...+.+..+...+-....+.+..  ..+++.||.||-++|++++|...++++|+
T Consensus        67 ~yy~~G~l~~q~~~~~~~~lv--~~l~~~~~~~~~~~ve~~~~~i~~~~~~k~Al~~LA~~Ydk~g~~~ka~~~yer~L~  144 (906)
T PRK14720         67 ALYISGILSLSRRPLNDSNLL--NLIDSFSQNLKWAIVEHICDKILLYGENKLALRTLAEAYAKLNENKKLKGVWERLVK  144 (906)
T ss_pred             hHHHHHHHHHhhcchhhhhhh--hhhhhcccccchhHHHHHHHHHHhhhhhhHHHHHHHHHHHHcCChHHHHHHHHHHHh
Confidence            345577777888888877777  77777766543322222222111111  13689999999999999999999999999


Q ss_pred             CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCCCcc
Q 017811          262 EDENNVKALFRRGKARAELGQTDAAREDFLKAGKFAPEDKSIARELRLLAEHEKAVYKKQKEIYKGIFGPRPEPK  336 (365)
Q Consensus       262 ~~p~n~ka~~~~g~a~~~l~~~~~A~~~l~~al~l~P~n~~~~~~l~~l~~~~~~~~~~~k~~y~kmf~~~~~~~  336 (365)
                      +||+|+-++.++|..|... +.++|+..+.+|+...=               ..++.......|.+++...++.-
T Consensus       145 ~D~~n~~aLNn~AY~~ae~-dL~KA~~m~~KAV~~~i---------------~~kq~~~~~e~W~k~~~~~~~d~  203 (906)
T PRK14720        145 ADRDNPEIVKKLATSYEEE-DKEKAITYLKKAIYRFI---------------KKKQYVGIEEIWSKLVHYNSDDF  203 (906)
T ss_pred             cCcccHHHHHHHHHHHHHh-hHHHHHHHHHHHHHHHH---------------hhhcchHHHHHHHHHHhcCcccc
Confidence            9999999999999999999 99999999999988711               11233455666777776666543

>COG4105 ComL DNA uptake lipoprotein [General function prediction only]

Probab=98.18  E-value=7.3e-05  Score=66.65  Aligned_cols=143  Identities=13%  Similarity=0.089  Sum_probs=108.2

Q ss_pred             HHHhhhhhhhhhhhhhHHHHHHHHHHHHHhhccchhhhhhhhHHHHHHHhhchhhhHHHHHHHHhcCHHHHHHHHHHHHh
Q 017811          182 ADRRKMDGNALFKEEKLEEAMQQYEMAIAYMGDDFMFQLFGKYRDMALAVKNPCHLNMAACLLKLKRYEEAIGQCSLVLG  261 (365)
Q Consensus       182 a~~~k~~G~~~~~~~~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~kl~~~~~A~~~~~~aL~  261 (365)
                      +..+.+.|...+..|+|.+|++.|+......|.....              ..+.+.++.++++.++|+.|+...++=+.
T Consensus        34 ~~~LY~~g~~~L~~gn~~~A~~~fe~l~~~~p~s~~~--------------~qa~l~l~yA~Yk~~~y~~A~~~~drFi~   99 (254)
T COG4105          34 ASELYNEGLTELQKGNYEEAIKYFEALDSRHPFSPYS--------------EQAQLDLAYAYYKNGEYDLALAYIDRFIR   99 (254)
T ss_pred             HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCccc--------------HHHHHHHHHHHHhcccHHHHHHHHHHHHH
Confidence            5678999999999999999999999999888875432              34588999999999999999999999999


Q ss_pred             CCCCCHH---HHHHHHHHHHHcCC--------HHHHHHHHHHHHhhCCCc---HHHHHHHHHHHHHHHHHHHH-------
Q 017811          262 EDENNVK---ALFRRGKARAELGQ--------TDAAREDFLKAGKFAPED---KSIARELRLLAEHEKAVYKK-------  320 (365)
Q Consensus       262 ~~p~n~k---a~~~~g~a~~~l~~--------~~~A~~~l~~al~l~P~n---~~~~~~l~~l~~~~~~~~~~-------  320 (365)
                      +.|.++.   ++|-+|.++...=+        -.+|...|+..+...|+.   +++...+..+..++..++-.       
T Consensus       100 lyP~~~n~dY~~YlkgLs~~~~i~~~~rDq~~~~~A~~~f~~~i~ryPnS~Ya~dA~~~i~~~~d~LA~~Em~IaryY~k  179 (254)
T COG4105         100 LYPTHPNADYAYYLKGLSYFFQIDDVTRDQSAARAAFAAFKELVQRYPNSRYAPDAKARIVKLNDALAGHEMAIARYYLK  179 (254)
T ss_pred             hCCCCCChhHHHHHHHHHHhccCCccccCHHHHHHHHHHHHHHHHHCCCCcchhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            9998764   88899998776533        367899999999999986   34444444444444443332       


Q ss_pred             ------HHHHHhcccCCCCCcccc
Q 017811          321 ------QKEIYKGIFGPRPEPKQK  338 (365)
Q Consensus       321 ------~k~~y~kmf~~~~~~~~~  338 (365)
                            ....++.|++.-++....
T Consensus       180 r~~~~AA~nR~~~v~e~y~~t~~~  203 (254)
T COG4105         180 RGAYVAAINRFEEVLENYPDTSAV  203 (254)
T ss_pred             hcChHHHHHHHHHHHhccccccch
Confidence                  233366677775544433

>KOG4151 consensus Myosin assembly protein/sexual cycle protein and related proteins [Posttranslational modification, protein turnover, chaperones; Cell cycle control, cell division, chromosome partitioning; General function prediction only]

Probab=98.16  E-value=6.3e-06  Score=83.08  Aligned_cols=126  Identities=29%  Similarity=0.419  Sum_probs=110.3

Q ss_pred             CCHHHHHHHHHHhhhhhhhhhhhhhHHHHHHHHHHHHHhhccchhhhhhhhHHHHHHHhhchhhhHHHHHHHHh--cCHH
Q 017811          173 MTVEERIGAADRRKMDGNALFKEEKLEEAMQQYEMAIAYMGDDFMFQLFGKYRDMALAVKNPCHLNMAACLLKL--KRYE  250 (365)
Q Consensus       173 ~~~~e~~~~a~~~k~~G~~~~~~~~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~kl--~~~~  250 (365)
                      .+....+..+...+.+||.+|.+++|..|.-.|..++.+.|.+..             ....++.|.+.||+.+  ++|.
T Consensus        44 ~di~v~l~ra~~~~~E~n~~~~K~d~~~~~~~~~~~~~llp~~~~-------------~~a~~~~~~~s~~m~~~l~~~~  110 (748)
T KOG4151|consen   44 EDIEVFLSRALELKEEGNKLFQKRDYEGAMFRYDCAIKLLPKDHH-------------VVATLRSNQASCYMQLGLGEYP  110 (748)
T ss_pred             cchHHHHHHHHHHHhhhhHHhhhhhhhccchhhhhhheeccccch-------------hhhhHHHHHHHHHhhcCccchh
Confidence            355667888999999999999999999999999999999996432             1355789999999876  5999


Q ss_pred             HHHHHHHHHHhCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHH
Q 017811          251 EAIGQCSLVLGEDENNVKALFRRGKARAELGQTDAAREDFLKAGKFAPEDKSIARELRLLA  311 (365)
Q Consensus       251 ~A~~~~~~aL~~~p~n~ka~~~~g~a~~~l~~~~~A~~~l~~al~l~P~n~~~~~~l~~l~  311 (365)
                      .++..|.-++...|...+++++++.+|..++.++-|+.++......+|++.++..-+..++
T Consensus       111 ~~~~E~~la~~~~p~i~~~Ll~r~~~y~al~k~d~a~rdl~i~~~~~p~~~~~~eif~elk  171 (748)
T KOG4151|consen  111 KAIPECELALESQPRISKALLKRARKYEALNKLDLAVRDLRIVEKMDPSNVSASEIFEELK  171 (748)
T ss_pred             hhcCchhhhhhccchHHHHHhhhhhHHHHHHHHHHHHHHHHHHhcCCCCcchHHHHHHHHH
Confidence            9999999999999999999999999999999999999999999999999977666555443

>KOG1129 consensus TPR repeat-containing protein [General function prediction only]

Probab=98.15  E-value=1.3e-05  Score=73.26  Aligned_cols=100  Identities=13%  Similarity=0.094  Sum_probs=75.7

Q ss_pred             hhhhhhhhhhhHHHHHHHHHHHHHhhccchhhhhhhhHHHHHHHhhchhhhHHHHHHHHhcCHHHHHHHHHHHHhCCCCC
Q 017811          187 MDGNALFKEEKLEEAMQQYEMAIAYMGDDFMFQLFGKYRDMALAVKNPCHLNMAACLLKLKRYEEAIGQCSLVLGEDENN  266 (365)
Q Consensus       187 ~~G~~~~~~~~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~kl~~~~~A~~~~~~aL~~~p~n  266 (365)
                      ..|..|++.|-+.+|...++.+|...|-..                  .++-|+.+|.++.++..|+..+...|+.-|.+
T Consensus       228 Q~gkCylrLgm~r~AekqlqssL~q~~~~d------------------TfllLskvY~ridQP~~AL~~~~~gld~fP~~  289 (478)
T KOG1129|consen  228 QMGKCYLRLGMPRRAEKQLQSSLTQFPHPD------------------TFLLLSKVYQRIDQPERALLVIGEGLDSFPFD  289 (478)
T ss_pred             HHHHHHHHhcChhhhHHHHHHHhhcCCchh------------------HHHHHHHHHHHhccHHHHHHHHhhhhhcCCch
Confidence            578899999999999999999998877532                  25666777777777777777777777777777


Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCcHHHH
Q 017811          267 VKALFRRGKARAELGQTDAAREDFLKAGKFAPEDKSIA  304 (365)
Q Consensus       267 ~ka~~~~g~a~~~l~~~~~A~~~l~~al~l~P~n~~~~  304 (365)
                      +..+.-.|+++.+++++++|++.|+.+++++|.|.++.
T Consensus       290 VT~l~g~ARi~eam~~~~~a~~lYk~vlk~~~~nvEai  327 (478)
T KOG1129|consen  290 VTYLLGQARIHEAMEQQEDALQLYKLVLKLHPINVEAI  327 (478)
T ss_pred             hhhhhhhHHHHHHHHhHHHHHHHHHHHHhcCCccceee
Confidence            77777777777777777777777777777777665444

>KOG1840 consensus Kinesin light chain [Cytoskeleton]

Probab=98.15  E-value=2.9e-05  Score=76.73  Aligned_cols=110  Identities=21%  Similarity=0.097  Sum_probs=91.3

Q ss_pred             HHHHHHhhhhhhhhhhhhhHHHHHHHHHHHHHhhccchhhhhhhhHHHHHHHhhchhhhHHHHHHHHhcCHHHHHHHHHH
Q 017811          179 IGAADRRKMDGNALFKEEKLEEAMQQYEMAIAYMGDDFMFQLFGKYRDMALAVKNPCHLNMAACLLKLKRYEEAIGQCSL  258 (365)
Q Consensus       179 ~~~a~~~k~~G~~~~~~~~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~kl~~~~~A~~~~~~  258 (365)
                      ...|..+.+.|..|.+.|+|.+|..+|.+|+++.......     .    ..-....+.|++..+..++++++|+.++.+
T Consensus       280 ~~va~~l~nLa~ly~~~GKf~EA~~~~e~Al~I~~~~~~~-----~----~~~v~~~l~~~~~~~~~~~~~Eea~~l~q~  350 (508)
T KOG1840|consen  280 PAVAATLNNLAVLYYKQGKFAEAEEYCERALEIYEKLLGA-----S----HPEVAAQLSELAAILQSMNEYEEAKKLLQK  350 (508)
T ss_pred             HHHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHhhcc-----C----hHHHHHHHHHHHHHHHHhcchhHHHHHHHH
Confidence            4667788899999999999999999999999998651110     0    111244589999999999999999999999


Q ss_pred             HHhCC-----C---CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC
Q 017811          259 VLGED-----E---NNVKALFRRGKARAELGQTDAAREDFLKAGKFA  297 (365)
Q Consensus       259 aL~~~-----p---~n~ka~~~~g~a~~~l~~~~~A~~~l~~al~l~  297 (365)
                      ++++.     +   .-++.+-++|.+|+.+|+|.+|...|++|+.+.
T Consensus       351 al~i~~~~~g~~~~~~a~~~~nl~~l~~~~gk~~ea~~~~k~ai~~~  397 (508)
T KOG1840|consen  351 ALKIYLDAPGEDNVNLAKIYANLAELYLKMGKYKEAEELYKKAIQIL  397 (508)
T ss_pred             HHHHHHhhccccchHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHH
Confidence            98652     2   346889999999999999999999999999875

>PF13431 TPR_17: Tetratricopeptide repeat

Probab=98.13  E-value=2.2e-06  Score=52.36  Aligned_cols=33  Identities=15%  Similarity=0.074  Sum_probs=31.3

Q ss_pred             HHHHHHhCCCCCHHHHHHHHHHHHHcCCHHHHH
Q 017811          255 QCSLVLGEDENNVKALFRRGKARAELGQTDAAR  287 (365)
Q Consensus       255 ~~~~aL~~~p~n~ka~~~~g~a~~~l~~~~~A~  287 (365)
                      .|+++|+++|+|+.+|+++|.+|...|++++|+
T Consensus         1 ~y~kAie~~P~n~~a~~nla~~~~~~g~~~~A~   33 (34)
T PF13431_consen    1 CYKKAIELNPNNAEAYNNLANLYLNQGDYEEAI   33 (34)
T ss_pred             ChHHHHHHCCCCHHHHHHHHHHHHHCcCHHhhc
Confidence            378999999999999999999999999999996

>KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only]

Probab=98.11  E-value=2.1e-05  Score=78.63  Aligned_cols=105  Identities=17%  Similarity=0.124  Sum_probs=88.5

Q ss_pred             chhhhHHHHHHHHhcCHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHH
Q 017811          233 NPCHLNMAACLLKLKRYEEAIGQCSLVLGEDENNVKALFRRGKARAELGQTDAAREDFLKAGKFAPEDKSIARELRLLAE  312 (365)
Q Consensus       233 ~~~~~nla~~~~kl~~~~~A~~~~~~aL~~~p~n~ka~~~~g~a~~~l~~~~~A~~~l~~al~l~P~n~~~~~~l~~l~~  312 (365)
                      ..+...+|.-.+..++|.+|..+++..++++|-....||++|.|..+++++..|..+|..++.++|+|.++.+.+...+-
T Consensus       485 arA~r~~~~~~~~~~~fs~~~~hle~sl~~nplq~~~wf~~G~~ALqlek~q~av~aF~rcvtL~Pd~~eaWnNls~ayi  564 (777)
T KOG1128|consen  485 ARAQRSLALLILSNKDFSEADKHLERSLEINPLQLGTWFGLGCAALQLEKEQAAVKAFHRCVTLEPDNAEAWNNLSTAYI  564 (777)
T ss_pred             HHHHHhhccccccchhHHHHHHHHHHHhhcCccchhHHHhccHHHHHHhhhHHHHHHHHHHhhcCCCchhhhhhhhHHHH
Confidence            34444555555667999999999999999999999999999999999999999999999999999999999999999888


Q ss_pred             HHHHHHHHHHHHHhcccCCCCCcccc
Q 017811          313 HEKAVYKKQKEIYKGIFGPRPEPKQK  338 (365)
Q Consensus       313 ~~~~~~~~~k~~y~kmf~~~~~~~~~  338 (365)
                      +.++..++-+. .+..++..-++++.
T Consensus       565 ~~~~k~ra~~~-l~EAlKcn~~~w~i  589 (777)
T KOG1128|consen  565 RLKKKKRAFRK-LKEALKCNYQHWQI  589 (777)
T ss_pred             HHhhhHHHHHH-HHHHhhcCCCCCee
Confidence            77776655544 66667766666655

>KOG4234 consensus TPR repeat-containing protein [General function prediction only]

Probab=98.10  E-value=1.9e-05  Score=67.52  Aligned_cols=99  Identities=22%  Similarity=0.161  Sum_probs=83.0

Q ss_pred             HHHHHHHhcCHHHHHHHHHHHHhCCCCCH-----HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHH
Q 017811          239 MAACLLKLKRYEEAIGQCSLVLGEDENNV-----KALFRRGKARAELGQTDAAREDFLKAGKFAPEDKSIARELRLLAEH  313 (365)
Q Consensus       239 la~~~~kl~~~~~A~~~~~~aL~~~p~n~-----ka~~~~g~a~~~l~~~~~A~~~l~~al~l~P~n~~~~~~l~~l~~~  313 (365)
                      -|.-+++.|+|.+|...|..||++.|.-.     -.|.++|.|++.++.++.|+.+..++++|+|.+..+....+.++..
T Consensus       101 EGN~~F~ngdyeeA~skY~~Ale~cp~~~~e~rsIly~Nraaa~iKl~k~e~aI~dcsKaiel~pty~kAl~RRAeayek  180 (271)
T KOG4234|consen  101 EGNELFKNGDYEEANSKYQEALESCPSTSTEERSILYSNRAAALIKLRKWESAIEDCSKAIELNPTYEKALERRAEAYEK  180 (271)
T ss_pred             HHHHhhhcccHHHHHHHHHHHHHhCccccHHHHHHHHhhhHHHHHHhhhHHHHHHHHHhhHhcCchhHHHHHHHHHHHHh
Confidence            35567899999999999999999998754     3677999999999999999999999999999988777777777777


Q ss_pred             HHHHHHHHHHHHhcccCCCCCcccc
Q 017811          314 EKAVYKKQKEIYKGIFGPRPEPKQK  338 (365)
Q Consensus       314 ~~~~~~~~k~~y~kmf~~~~~~~~~  338 (365)
                      ...+. ..-..|++++..+|...+.
T Consensus       181 ~ek~e-ealeDyKki~E~dPs~~ea  204 (271)
T KOG4234|consen  181 MEKYE-EALEDYKKILESDPSRREA  204 (271)
T ss_pred             hhhHH-HHHHHHHHHHHhCcchHHH
Confidence            75544 4556699999999976643

>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi

Probab=98.08  E-value=2.7e-05  Score=74.89  Aligned_cols=99  Identities=16%  Similarity=0.098  Sum_probs=76.6

Q ss_pred             hhhhhhhhhhHHHHHHHHHHHHHhhccchhhhhhhhHHHHHHHhhchhhhHHHHHHHHhcCHHHHHHHHHHHHhCCCCCH
Q 017811          188 DGNALFKEEKLEEAMQQYEMAIAYMGDDFMFQLFGKYRDMALAVKNPCHLNMAACLLKLKRYEEAIGQCSLVLGEDENNV  267 (365)
Q Consensus       188 ~G~~~~~~~~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~kl~~~~~A~~~~~~aL~~~p~n~  267 (365)
                      .+..++..++-.+|++...++|...|.+..                 ++.-.|..+++.++++.|+..+++++.+.|.+.
T Consensus       206 LA~v~l~~~~E~~AI~ll~~aL~~~p~d~~-----------------LL~~Qa~fLl~k~~~~lAL~iAk~av~lsP~~f  268 (395)
T PF09295_consen  206 LARVYLLMNEEVEAIRLLNEALKENPQDSE-----------------LLNLQAEFLLSKKKYELALEIAKKAVELSPSEF  268 (395)
T ss_pred             HHHHHHhcCcHHHHHHHHHHHHHhCCCCHH-----------------HHHHHHHHHHhcCCHHHHHHHHHHHHHhCchhH
Confidence            455566666777888888888877776532                 366778888899999999999999999999999


Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCcHHH
Q 017811          268 KALFRRGKARAELGQTDAAREDFLKAGKFAPEDKSI  303 (365)
Q Consensus       268 ka~~~~g~a~~~l~~~~~A~~~l~~al~l~P~n~~~  303 (365)
                      ++|+.++.+|..+|+|+.|+..++.+--+-++++..
T Consensus       269 ~~W~~La~~Yi~~~d~e~ALlaLNs~Pm~~~~~k~~  304 (395)
T PF09295_consen  269 ETWYQLAECYIQLGDFENALLALNSCPMLTYKDKYK  304 (395)
T ss_pred             HHHHHHHHHHHhcCCHHHHHHHHhcCcCCCCccchh
Confidence            999999999999999999998887654443344333

They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other [].

>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]

Probab=98.07  E-value=9.7e-06  Score=49.19  Aligned_cols=34  Identities=32%  Similarity=0.434  Sum_probs=25.6

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCc
Q 017811          267 VKALFRRGKARAELGQTDAAREDFLKAGKFAPED  300 (365)
Q Consensus       267 ~ka~~~~g~a~~~l~~~~~A~~~l~~al~l~P~n  300 (365)
                      +++++.+|.++..+|+|++|+..|++++.++|+|
T Consensus         1 a~~~~~lg~~~~~~~~~~~A~~~~~~al~l~p~~   34 (34)
T PF07719_consen    1 AEAWYYLGQAYYQLGNYEEAIEYFEKALELDPNN   34 (34)
T ss_dssp             HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTTS
T ss_pred             CHHHHHHHHHHHHhCCHHHHHHHHHHHHHHCcCC
Confidence            3577788888888888888888888888888765

It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....

>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A

Probab=98.07  E-value=3.2e-05  Score=71.69  Aligned_cols=160  Identities=19%  Similarity=0.084  Sum_probs=108.9

Q ss_pred             HHHHHHhhhhhhhhhhhhhHHHHHHHHHHHHHhhccchhhhhhhhHHHHHHHhhchhhhHHHHHHHHhcCHHHHHHHHHH
Q 017811          179 IGAADRRKMDGNALFKEEKLEEAMQQYEMAIAYMGDDFMFQLFGKYRDMALAVKNPCHLNMAACLLKLKRYEEAIGQCSL  258 (365)
Q Consensus       179 ~~~a~~~k~~G~~~~~~~~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~kl~~~~~A~~~~~~  258 (365)
                      -..+..+..-|+.+-..++|.+|...|.+|..+......           ......+|.+.+.||.+. ++.+|+.++++
T Consensus        32 e~Aa~~y~~Aa~~fk~~~~~~~A~~ay~kAa~~~~~~~~-----------~~~Aa~~~~~Aa~~~k~~-~~~~Ai~~~~~   99 (282)
T PF14938_consen   32 EEAADLYEKAANCFKLAKDWEKAAEAYEKAADCYEKLGD-----------KFEAAKAYEEAANCYKKG-DPDEAIECYEK   99 (282)
T ss_dssp             HHHHHHHHHHHHHHHHTT-CHHHHHHHHHHHHHHHHTT------------HHHHHHHHHHHHHHHHHT-THHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHcCC-----------HHHHHHHHHHHHHHHHhh-CHHHHHHHHHH
Confidence            345667777788777889999999999999887653211           011245688889998766 99999999999


Q ss_pred             HHhCC--CC----CHHHHHHHHHHHHHc-CCHHHHHHHHHHHHhhCCCc------HHHHHHHHHHHHHHHHHHHHHHHHH
Q 017811          259 VLGED--EN----NVKALFRRGKARAEL-GQTDAAREDFLKAGKFAPED------KSIARELRLLAEHEKAVYKKQKEIY  325 (365)
Q Consensus       259 aL~~~--p~----n~ka~~~~g~a~~~l-~~~~~A~~~l~~al~l~P~n------~~~~~~l~~l~~~~~~~~~~~k~~y  325 (365)
                      |+.+.  .+    -.+++.++|.+|... +++++|+..|++|+.+...+      ..+...+..+....+++.++ ...|
T Consensus       100 A~~~y~~~G~~~~aA~~~~~lA~~ye~~~~d~e~Ai~~Y~~A~~~y~~e~~~~~a~~~~~~~A~l~~~l~~y~~A-~~~~  178 (282)
T PF14938_consen  100 AIEIYREAGRFSQAAKCLKELAEIYEEQLGDYEKAIEYYQKAAELYEQEGSPHSAAECLLKAADLYARLGRYEEA-IEIY  178 (282)
T ss_dssp             HHHHHHHCT-HHHHHHHHHHHHHHHCCTT--HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTT-HHHH-HHHH
T ss_pred             HHHHHHhcCcHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCChhhHHHHHHHHHHHHHHhCCHHHH-HHHH
Confidence            98763  22    257999999999998 99999999999999974321      23445566676777777655 4447


Q ss_pred             hcccCCCCCcc-----ccchhHHHHHHHHHH
Q 017811          326 KGIFGPRPEPK-----QKKNWLIIFWQLLVS  351 (365)
Q Consensus       326 ~kmf~~~~~~~-----~~~~~~~~~~~~~~~  351 (365)
                      .++........     .+..++...+++|..
T Consensus       179 e~~~~~~l~~~l~~~~~~~~~l~a~l~~L~~  209 (282)
T PF14938_consen  179 EEVAKKCLENNLLKYSAKEYFLKAILCHLAM  209 (282)
T ss_dssp             HHHHHTCCCHCTTGHHHHHHHHHHHHHHHHT
T ss_pred             HHHHHHhhcccccchhHHHHHHHHHHHHHHc
Confidence            77644332222     224556666666654

>KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms]

Probab=98.06  E-value=4.8e-05  Score=76.49  Aligned_cols=135  Identities=13%  Similarity=0.019  Sum_probs=112.8

Q ss_pred             HHhhhhhhhhhhhhhHHHHHHHHHHHHHhhccchhhhhhhhHHHHHHHhhchhhhHHHHHHHHhcCHHHHHHHHHHHHhC
Q 017811          183 DRRKMDGNALFKEEKLEEAMQQYEMAIAYMGDDFMFQLFGKYRDMALAVKNPCHLNMAACLLKLKRYEEAIGQCSLVLGE  262 (365)
Q Consensus       183 ~~~k~~G~~~~~~~~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~kl~~~~~A~~~~~~aL~~  262 (365)
                      ..+...+..+.+.++-++|..+..+|-.+.|..                 ...|+-+|.++...|++.+|...|..|+.+
T Consensus       651 ~lwllaa~~~~~~~~~~~a~~CL~Ea~~~~~l~-----------------~~~~~~~G~~~~~~~~~~EA~~af~~Al~l  713 (799)
T KOG4162|consen  651 KLWLLAADLFLLSGNDDEARSCLLEASKIDPLS-----------------ASVYYLRGLLLEVKGQLEEAKEAFLVALAL  713 (799)
T ss_pred             HHHHHHHHHHHhcCCchHHHHHHHHHHhcchhh-----------------HHHHHHhhHHHHHHHhhHHHHHHHHHHHhc
Confidence            344556666667777888888999988887764                 335899999999999999999999999999


Q ss_pred             CCCCHHHHHHHHHHHHHcCCHHHHHH--HHHHHHhhCCCcHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCCCc
Q 017811          263 DENNVKALFRRGKARAELGQTDAARE--DFLKAGKFAPEDKSIARELRLLAEHEKAVYKKQKEIYKGIFGPRPEP  335 (365)
Q Consensus       263 ~p~n~ka~~~~g~a~~~l~~~~~A~~--~l~~al~l~P~n~~~~~~l~~l~~~~~~~~~~~k~~y~kmf~~~~~~  335 (365)
                      ||+++..+.-+|.++...|+-.-|..  .+..++++||.|.+++..++.+.+.+++..++ ...|.-.+...+.+
T Consensus       714 dP~hv~s~~Ala~~lle~G~~~la~~~~~L~dalr~dp~n~eaW~~LG~v~k~~Gd~~~A-aecf~aa~qLe~S~  787 (799)
T KOG4162|consen  714 DPDHVPSMTALAELLLELGSPRLAEKRSLLSDALRLDPLNHEAWYYLGEVFKKLGDSKQA-AECFQAALQLEESN  787 (799)
T ss_pred             CCCCcHHHHHHHHHHHHhCCcchHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHccchHHH-HHHHHHHHhhccCC
Confidence            99999999999999999999777777  99999999999999999999999888887644 44476665555433

>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]

Probab=98.04  E-value=4.2e-06  Score=50.99  Aligned_cols=32  Identities=28%  Similarity=0.393  Sum_probs=29.5

Q ss_pred             hhhHHHHHHHHhcCHHHHHHHHHHHHhCCCCC
Q 017811          235 CHLNMAACLLKLKRYEEAIGQCSLVLGEDENN  266 (365)
Q Consensus       235 ~~~nla~~~~kl~~~~~A~~~~~~aL~~~p~n  266 (365)
                      +|+++|.||+.+++|++|+.+|+++|+++|+|
T Consensus         3 ~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~   34 (34)
T PF00515_consen    3 AYYNLGNAYFQLGDYEEALEYYQRALELDPDN   34 (34)
T ss_dssp             HHHHHHHHHHHTT-HHHHHHHHHHHHHHSTTH
T ss_pred             HHHHHHHHHHHhCCchHHHHHHHHHHHHCcCC
Confidence            59999999999999999999999999999974

It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....

>PRK10747 putative protoheme IX biogenesis protein; Provisional

Probab=98.04  E-value=5.1e-05  Score=73.85  Aligned_cols=125  Identities=14%  Similarity=-0.025  Sum_probs=98.1

Q ss_pred             HhhhhhhhhhhhhhHHHHHHHHHHHHHhhccchhhhhhhhHHHHHHHhhchhhhHHHHHHHHhcCHHHHHHHHHHHHhCC
Q 017811          184 RRKMDGNALFKEEKLEEAMQQYEMAIAYMGDDFMFQLFGKYRDMALAVKNPCHLNMAACLLKLKRYEEAIGQCSLVLGED  263 (365)
Q Consensus       184 ~~k~~G~~~~~~~~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~kl~~~~~A~~~~~~aL~~~  263 (365)
                      .....+..+...|+++.|.....++++..+ +..                   .-+...++..+++++++..++..++.+
T Consensus       265 ~~~~~A~~l~~~g~~~~A~~~L~~~l~~~~-~~~-------------------l~~l~~~l~~~~~~~al~~~e~~lk~~  324 (398)
T PRK10747        265 LQVAMAEHLIECDDHDTAQQIILDGLKRQY-DER-------------------LVLLIPRLKTNNPEQLEKVLRQQIKQH  324 (398)
T ss_pred             HHHHHHHHHHHCCCHHHHHHHHHHHHhcCC-CHH-------------------HHHHHhhccCCChHHHHHHHHHHHhhC
Confidence            334557788899999999999999988433 211                   111223334599999999999999999


Q ss_pred             CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHHHHHHHHHHHHHhcccC
Q 017811          264 ENNVKALFRRGKARAELGQTDAAREDFLKAGKFAPEDKSIARELRLLAEHEKAVYKKQKEIYKGIFG  330 (365)
Q Consensus       264 p~n~ka~~~~g~a~~~l~~~~~A~~~l~~al~l~P~n~~~~~~l~~l~~~~~~~~~~~k~~y~kmf~  330 (365)
                      |+|+..++.+|++++..++|++|...|++++++.|++.... .+..+.....+..+. ...|++-+.
T Consensus       325 P~~~~l~l~lgrl~~~~~~~~~A~~~le~al~~~P~~~~~~-~La~~~~~~g~~~~A-~~~~~~~l~  389 (398)
T PRK10747        325 GDTPLLWSTLGQLLMKHGEWQEASLAFRAALKQRPDAYDYA-WLADALDRLHKPEEA-AAMRRDGLM  389 (398)
T ss_pred             CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCHHHHH-HHHHHHHHcCCHHHH-HHHHHHHHh
Confidence            99999999999999999999999999999999999976634 688887777776655 555776544

>PF15015 NYD-SP12_N: Spermatogenesis-associated, N-terminal

Probab=98.03  E-value=6.3e-05  Score=70.87  Aligned_cols=115  Identities=11%  Similarity=0.173  Sum_probs=93.1

Q ss_pred             HHHHhhhhhhhhhhhhhHHHHHHHHHHHHHhhccchhhhh-hhhHHHHHHHhhchhhhHHHHHHHHhcCHHHHHHHHHHH
Q 017811          181 AADRRKMDGNALFKEEKLEEAMQQYEMAIAYMGDDFMFQL-FGKYRDMALAVKNPCHLNMAACLLKLKRYEEAIGQCSLV  259 (365)
Q Consensus       181 ~a~~~k~~G~~~~~~~~y~~A~~~y~~al~~~~~~~~~~~-~~~~~~~~~~~~~~~~~nla~~~~kl~~~~~A~~~~~~a  259 (365)
                      ........|..+|++++|..|+-.|..||++..+....+. .....+....+.+-+-..|..||+++++.+.|+....+.
T Consensus       175 wl~vAL~das~~yrqk~ya~Aa~rF~taLelcskg~a~~k~~~~~~~di~~vaSfIetklv~CYL~~rkpdlALnh~hrs  254 (569)
T PF15015_consen  175 WLQVALKDASSCYRQKKYAVAAGRFRTALELCSKGAALSKPFKASAEDISSVASFIETKLVTCYLRMRKPDLALNHSHRS  254 (569)
T ss_pred             HHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHhhhhhccCCCCCChhhHHHHHHHHHHHHHHhhhhcCCCchHHHHHhhh
Confidence            3444556888999999999999999999999876433222 222233444555566789999999999999999999999


Q ss_pred             HhCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 017811          260 LGEDENNVKALFRRGKARAELGQTDAAREDFLKAGK  295 (365)
Q Consensus       260 L~~~p~n~ka~~~~g~a~~~l~~~~~A~~~l~~al~  295 (365)
                      +-++|.+..-+.|.|-|+..+.+|.+|...+.-+.-
T Consensus       255 I~lnP~~frnHLrqAavfR~LeRy~eAarSamia~y  290 (569)
T PF15015_consen  255 INLNPSYFRNHLRQAAVFRRLERYSEAARSAMIADY  290 (569)
T ss_pred             hhcCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            999999999999999999999999999877766554

>PF13428 TPR_14: Tetratricopeptide repeat

Probab=98.01  E-value=1.4e-05  Score=51.86  Aligned_cols=40  Identities=30%  Similarity=0.351  Sum_probs=23.3

Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCcHHHHHHHH
Q 017811          269 ALFRRGKARAELGQTDAAREDFLKAGKFAPEDKSIARELR  308 (365)
Q Consensus       269 a~~~~g~a~~~l~~~~~A~~~l~~al~l~P~n~~~~~~l~  308 (365)
                      +++.+|.+|..+|++++|+..|+++++.+|+|..++..+.
T Consensus         3 ~~~~la~~~~~~G~~~~A~~~~~~~l~~~P~~~~a~~~La   42 (44)
T PF13428_consen    3 AWLALARAYRRLGQPDEAERLLRRALALDPDDPEAWRALA   42 (44)
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCHHHHHHhh
Confidence            4555566666666666666666666666666655555443

>KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown]

Probab=98.00  E-value=1.5e-05  Score=73.19  Aligned_cols=98  Identities=17%  Similarity=0.049  Sum_probs=80.0

Q ss_pred             hhHHHHHHHHhcCHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHHH
Q 017811          236 HLNMAACLLKLKRYEEAIGQCSLVLGEDENNVKALFRRGKARAELGQTDAAREDFLKAGKFAPEDKSIARELRLLAEHEK  315 (365)
Q Consensus       236 ~~nla~~~~kl~~~~~A~~~~~~aL~~~p~n~ka~~~~g~a~~~l~~~~~A~~~l~~al~l~P~n~~~~~~l~~l~~~~~  315 (365)
                      +-..|.-|+++|.|++||.+|.+++..+|.|+-.+.+||.||+.+..|..|..+...|+.|+-....+.......+..++
T Consensus       100 iKE~GN~yFKQgKy~EAIDCYs~~ia~~P~NpV~~~NRA~AYlk~K~FA~AE~DC~~AiaLd~~Y~KAYSRR~~AR~~Lg  179 (536)
T KOG4648|consen  100 IKERGNTYFKQGKYEEAIDCYSTAIAVYPHNPVYHINRALAYLKQKSFAQAEEDCEAAIALDKLYVKAYSRRMQARESLG  179 (536)
T ss_pred             HHHhhhhhhhccchhHHHHHhhhhhccCCCCccchhhHHHHHHHHHHHHHHHHhHHHHHHhhHHHHHHHHHHHHHHHHHh
Confidence            34678899999999999999999999999999999999999999999999999999999998765555554444444444


Q ss_pred             HHHHHHHHHHhcccCCCCC
Q 017811          316 AVYKKQKEIYKGIFGPRPE  334 (365)
Q Consensus       316 ~~~~~~k~~y~kmf~~~~~  334 (365)
                      ... ..++.|...|...|.
T Consensus       180 ~~~-EAKkD~E~vL~LEP~  197 (536)
T KOG4648|consen  180 NNM-EAKKDCETVLALEPK  197 (536)
T ss_pred             hHH-HHHHhHHHHHhhCcc
Confidence            433 445568888777775

>KOG3060 consensus Uncharacterized conserved protein [Function unknown]

Probab=97.97  E-value=0.00028  Score=62.62  Aligned_cols=90  Identities=18%  Similarity=0.116  Sum_probs=74.5

Q ss_pred             HHHHHhhhhhhhhhhhhhHHHHHHHHHHHHHhhccchhhhhhhhHHHHHHHhhchhhhHHHHHHHHhc---CHHHHHHHH
Q 017811          180 GAADRRKMDGNALFKEEKLEEAMQQYEMAIAYMGDDFMFQLFGKYRDMALAVKNPCHLNMAACLLKLK---RYEEAIGQC  256 (365)
Q Consensus       180 ~~a~~~k~~G~~~~~~~~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~kl~---~~~~A~~~~  256 (365)
                      ...+.|.+.+..|+..|+|..|.-+|++.+-+.|-++..                 +..+|.+++-+|   ++.-|..+|
T Consensus       152 ~D~EAW~eLaeiY~~~~~f~kA~fClEE~ll~~P~n~l~-----------------f~rlae~~Yt~gg~eN~~~arkyy  214 (289)
T KOG3060|consen  152 NDQEAWHELAEIYLSEGDFEKAAFCLEELLLIQPFNPLY-----------------FQRLAEVLYTQGGAENLELARKYY  214 (289)
T ss_pred             CcHHHHHHHHHHHHhHhHHHHHHHHHHHHHHcCCCcHHH-----------------HHHHHHHHHHHhhHHHHHHHHHHH
Confidence            445578889999999999999999999999999987553                 778888888776   788899999


Q ss_pred             HHHHhCCCCCHHHHHHHHHHHHHcCCHHHH
Q 017811          257 SLVLGEDENNVKALFRRGKARAELGQTDAA  286 (365)
Q Consensus       257 ~~aL~~~p~n~ka~~~~g~a~~~l~~~~~A  286 (365)
                      .++|+++|.|..++|-+-.|--++-+...+
T Consensus       215 ~~alkl~~~~~ral~GI~lc~~~la~~sk~  244 (289)
T KOG3060|consen  215 ERALKLNPKNLRALFGIYLCGSALAQISKA  244 (289)
T ss_pred             HHHHHhChHhHHHHHHHHHHHHHHHHHhHH
Confidence            999999999999999888777666544433

>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A

Probab=97.94  E-value=0.00036  Score=61.34  Aligned_cols=115  Identities=19%  Similarity=0.121  Sum_probs=88.2

Q ss_pred             HhhhhhhhhhhhhhHHHHHHHHHHHHHhhccchhhhhhhhHHHHHHHhhchhhhHHHHHHHHhc-----------CHHHH
Q 017811          184 RRKMDGNALFKEEKLEEAMQQYEMAIAYMGDDFMFQLFGKYRDMALAVKNPCHLNMAACLLKLK-----------RYEEA  252 (365)
Q Consensus       184 ~~k~~G~~~~~~~~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~kl~-----------~~~~A  252 (365)
                      .....|..+++.|+|..|+..|++.+...|.+...              ..+++.+|.|++++.           ...+|
T Consensus        44 A~l~la~a~y~~~~y~~A~~~~~~fi~~yP~~~~~--------------~~A~Y~~g~~~~~~~~~~~~~~~D~~~~~~A  109 (203)
T PF13525_consen   44 AQLMLAYAYYKQGDYEEAIAAYERFIKLYPNSPKA--------------DYALYMLGLSYYKQIPGILRSDRDQTSTRKA  109 (203)
T ss_dssp             HHHHHHHHHHHTT-HHHHHHHHHHHHHH-TT-TTH--------------HHHHHHHHHHHHHHHHHHH-TT---HHHHHH
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcch--------------hhHHHHHHHHHHHhCccchhcccChHHHHHH
Confidence            45678999999999999999999999999986442              235888888887764           34589


Q ss_pred             HHHHHHHHhCCCCCHH-----------------HHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHH
Q 017811          253 IGQCSLVLGEDENNVK-----------------ALFRRGKARAELGQTDAAREDFLKAGKFAPEDKSIARELRLLAE  312 (365)
Q Consensus       253 ~~~~~~aL~~~p~n~k-----------------a~~~~g~a~~~l~~~~~A~~~l~~al~l~P~n~~~~~~l~~l~~  312 (365)
                      +..++..+...|++.-                 --+..|.-|...|.|..|+.-++.+++-.|+.+.+...+..+..
T Consensus       110 ~~~~~~li~~yP~S~y~~~A~~~l~~l~~~la~~e~~ia~~Y~~~~~y~aA~~r~~~v~~~yp~t~~~~~al~~l~~  186 (203)
T PF13525_consen  110 IEEFEELIKRYPNSEYAEEAKKRLAELRNRLAEHELYIARFYYKRGKYKAAIIRFQYVIENYPDTPAAEEALARLAE  186 (203)
T ss_dssp             HHHHHHHHHH-TTSTTHHHHHHHHHHHHHHHHHHHHHHHHHHHCTT-HHHHHHHHHHHHHHSTTSHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHCcCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCCchHHHHHHHHHH
Confidence            9999999999998742                 22346888999999999999999999999998776665555444

>PRK11906 transcriptional regulator; Provisional

Probab=97.93  E-value=0.00014  Score=70.09  Aligned_cols=90  Identities=10%  Similarity=-0.056  Sum_probs=80.6

Q ss_pred             hhhHHHHHHHHHHHHHhhccchhhhhhhhHHHHHHHhhchhhhHHHHHHHHhcCHHHHHHHHHHHHhCCCCCHHHHHHHH
Q 017811          195 EEKLEEAMQQYEMAIAYMGDDFMFQLFGKYRDMALAVKNPCHLNMAACLLKLKRYEEAIGQCSLVLGEDENNVKALFRRG  274 (365)
Q Consensus       195 ~~~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~kl~~~~~A~~~~~~aL~~~p~n~ka~~~~g  274 (365)
                      ...-.+|.+.-.+|+++.+.|..                 ++..+|.++...++++.|+..+++|+.++|+.+.++|..|
T Consensus       317 ~~~~~~a~~~A~rAveld~~Da~-----------------a~~~~g~~~~~~~~~~~a~~~f~rA~~L~Pn~A~~~~~~~  379 (458)
T PRK11906        317 ELAAQKALELLDYVSDITTVDGK-----------------ILAIMGLITGLSGQAKVSHILFEQAKIHSTDIASLYYYRA  379 (458)
T ss_pred             hHHHHHHHHHHHHHHhcCCCCHH-----------------HHHHHHHHHHhhcchhhHHHHHHHHhhcCCccHHHHHHHH
Confidence            34556778888888888887744                 4889999999999999999999999999999999999999


Q ss_pred             HHHHHcCCHHHHHHHHHHHHhhCCCcH
Q 017811          275 KARAELGQTDAAREDFLKAGKFAPEDK  301 (365)
Q Consensus       275 ~a~~~l~~~~~A~~~l~~al~l~P~n~  301 (365)
                      ..+...|+.++|...+.+|++++|.-.
T Consensus       380 ~~~~~~G~~~~a~~~i~~alrLsP~~~  406 (458)
T PRK11906        380 LVHFHNEKIEEARICIDKSLQLEPRRR  406 (458)
T ss_pred             HHHHHcCCHHHHHHHHHHHhccCchhh
Confidence            999999999999999999999999743

>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi

Probab=97.93  E-value=0.00013  Score=70.28  Aligned_cols=107  Identities=16%  Similarity=0.042  Sum_probs=97.7

Q ss_pred             hhhHHHHHHHHHHHHHhhccchhhhhhhhHHHHHHHhhchhhhHHHHHHHHhcCHHHHHHHHHHHHhCCCCCHHHHHHHH
Q 017811          195 EEKLEEAMQQYEMAIAYMGDDFMFQLFGKYRDMALAVKNPCHLNMAACLLKLKRYEEAIGQCSLVLGEDENNVKALFRRG  274 (365)
Q Consensus       195 ~~~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~kl~~~~~A~~~~~~aL~~~p~n~ka~~~~g  274 (365)
                      .++|+.|+..+++.....|..                    ..-+|.+++..++-.+|+....++|...|.+...+.-.+
T Consensus       182 t~~~~~ai~lle~L~~~~pev--------------------~~~LA~v~l~~~~E~~AI~ll~~aL~~~p~d~~LL~~Qa  241 (395)
T PF09295_consen  182 TQRYDEAIELLEKLRERDPEV--------------------AVLLARVYLLMNEEVEAIRLLNEALKENPQDSELLNLQA  241 (395)
T ss_pred             cccHHHHHHHHHHHHhcCCcH--------------------HHHHHHHHHhcCcHHHHHHHHHHHHHhCCCCHHHHHHHH
Confidence            467899999999988777652                    456899999999999999999999999999999999999


Q ss_pred             HHHHHcCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHHHHHHHHH
Q 017811          275 KARAELGQTDAAREDFLKAGKFAPEDKSIARELRLLAEHEKAVYKKQ  321 (365)
Q Consensus       275 ~a~~~l~~~~~A~~~l~~al~l~P~n~~~~~~l~~l~~~~~~~~~~~  321 (365)
                      ..++..++++.|+...+++..+.|++-..+..|..++...++++.+.
T Consensus       242 ~fLl~k~~~~lAL~iAk~av~lsP~~f~~W~~La~~Yi~~~d~e~AL  288 (395)
T PF09295_consen  242 EFLLSKKKYELALEIAKKAVELSPSEFETWYQLAECYIQLGDFENAL  288 (395)
T ss_pred             HHHHhcCCHHHHHHHHHHHHHhCchhHHHHHHHHHHHHhcCCHHHHH
Confidence            99999999999999999999999999999999999999999988763

They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other [].

>PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment

Probab=97.92  E-value=5.4e-05  Score=70.25  Aligned_cols=119  Identities=15%  Similarity=0.104  Sum_probs=83.0

Q ss_pred             hhhhhhhhHHHHHHHHHHHHHhhccchhhhhhhhHHHHHHHhhchhhhHHHHHHHH--hc--CHHHHHHHHHHHHhCCCC
Q 017811          190 NALFKEEKLEEAMQQYEMAIAYMGDDFMFQLFGKYRDMALAVKNPCHLNMAACLLK--LK--RYEEAIGQCSLVLGEDEN  265 (365)
Q Consensus       190 ~~~~~~~~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~k--l~--~~~~A~~~~~~aL~~~p~  265 (365)
                      ..+++.++++.|.+.++.+-++.++.                   +..++|.++..  .|  .+.+|...|+......+.
T Consensus       139 qi~L~~~R~dlA~k~l~~~~~~~eD~-------------------~l~qLa~awv~l~~g~e~~~~A~y~f~El~~~~~~  199 (290)
T PF04733_consen  139 QILLKMNRPDLAEKELKNMQQIDEDS-------------------ILTQLAEAWVNLATGGEKYQDAFYIFEELSDKFGS  199 (290)
T ss_dssp             HHHHHTT-HHHHHHHHHHHHCCSCCH-------------------HHHHHHHHHHHHHHTTTCCCHHHHHHHHHHCCS--
T ss_pred             HHHHHcCCHHHHHHHHHHHHhcCCcH-------------------HHHHHHHHHHHHHhCchhHHHHHHHHHHHHhccCC
Confidence            35666777777777776665554332                   35566554444  44  689999999998888788


Q ss_pred             CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 017811          266 NVKALFRRGKARAELGQTDAAREDFLKAGKFAPEDKSIARELRLLAEHEKAVYKKQKEIYKG  327 (365)
Q Consensus       266 n~ka~~~~g~a~~~l~~~~~A~~~l~~al~l~P~n~~~~~~l~~l~~~~~~~~~~~k~~y~k  327 (365)
                      +++.+..+|.|++.+|+|++|...++.++..+|+|+++...+..|....++......+....
T Consensus       200 t~~~lng~A~~~l~~~~~~eAe~~L~~al~~~~~~~d~LaNliv~~~~~gk~~~~~~~~l~q  261 (290)
T PF04733_consen  200 TPKLLNGLAVCHLQLGHYEEAEELLEEALEKDPNDPDTLANLIVCSLHLGKPTEAAERYLSQ  261 (290)
T ss_dssp             SHHHHHHHHHHHHHCT-HHHHHHHHHHHCCC-CCHHHHHHHHHHHHHHTT-TCHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHhCCChhHHHHHHHH
Confidence            99999999999999999999999999999999999998888877766666553334443333

This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A.

>KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]

Probab=97.92  E-value=0.00014  Score=68.60  Aligned_cols=135  Identities=18%  Similarity=0.130  Sum_probs=100.5

Q ss_pred             HHHhhhhhhhhhhhhhHHHHHHHHHHHHHhhccchhh--------hhhh---hHHHHHHHhhchh------hhHHHHHHH
Q 017811          182 ADRRKMDGNALFKEEKLEEAMQQYEMAIAYMGDDFMF--------QLFG---KYRDMALAVKNPC------HLNMAACLL  244 (365)
Q Consensus       182 a~~~k~~G~~~~~~~~y~~A~~~y~~al~~~~~~~~~--------~~~~---~~~~~~~~~~~~~------~~nla~~~~  244 (365)
                      ..-+-..|..+|..|++.+|+..|+++..++|.+...        ...+   ........+....      ++--+....
T Consensus       232 vhLl~~lak~~~~~Gdn~~a~~~Fe~~~~~dpy~i~~MD~Ya~LL~~eg~~e~~~~L~~~Lf~~~~~ta~~wfV~~~~l~  311 (564)
T KOG1174|consen  232 EHLMMALGKCLYYNGDYFQAEDIFSSTLCANPDNVEAMDLYAVLLGQEGGCEQDSALMDYLFAKVKYTASHWFVHAQLLY  311 (564)
T ss_pred             HHHHHHHhhhhhhhcCchHHHHHHHHHhhCChhhhhhHHHHHHHHHhccCHhhHHHHHHHHHhhhhcchhhhhhhhhhhh
Confidence            4456678999999999999999999999999875331        0000   0011111111111      222244455


Q ss_pred             HhcCHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHHHH
Q 017811          245 KLKRYEEAIGQCSLVLGEDENNVKALFRRGKARAELGQTDAAREDFLKAGKFAPEDKSIARELRLLAEHEKA  316 (365)
Q Consensus       245 kl~~~~~A~~~~~~aL~~~p~n~ka~~~~g~a~~~l~~~~~A~~~l~~al~l~P~n~~~~~~l~~l~~~~~~  316 (365)
                      ..++|..|+.+..++|..+|.|+.+|.-.|.++.++++.++|.-.|+.|..+.|.+-++...|-.++...+.
T Consensus       312 ~~K~~~rAL~~~eK~I~~~~r~~~alilKG~lL~~~~R~~~A~IaFR~Aq~Lap~rL~~Y~GL~hsYLA~~~  383 (564)
T KOG1174|consen  312 DEKKFERALNFVEKCIDSEPRNHEALILKGRLLIALERHTQAVIAFRTAQMLAPYRLEIYRGLFHSYLAQKR  383 (564)
T ss_pred             hhhhHHHHHHHHHHHhccCcccchHHHhccHHHHhccchHHHHHHHHHHHhcchhhHHHHHHHHHHHHhhch
Confidence            678999999999999999999999999999999999999999999999999999887777776666554433

>COG1729 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=97.92  E-value=7.7e-05  Score=67.07  Aligned_cols=102  Identities=17%  Similarity=0.112  Sum_probs=86.4

Q ss_pred             hhHHHHHHHHhcCHHHHHHHHHHHHhCCCCCH---HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCc---HHHHHHHHH
Q 017811          236 HLNMAACLLKLKRYEEAIGQCSLVLGEDENNV---KALFRRGKARAELGQTDAAREDFLKAGKFAPED---KSIARELRL  309 (365)
Q Consensus       236 ~~nla~~~~kl~~~~~A~~~~~~aL~~~p~n~---ka~~~~g~a~~~l~~~~~A~~~l~~al~l~P~n---~~~~~~l~~  309 (365)
                      ++|.|.-+++.|+|..|...|..=+...|++.   .|+||+|.+++.+|+|++|...|..+.+-.|++   +++.-.|+.
T Consensus       144 ~Y~~A~~~~ksgdy~~A~~~F~~fi~~YP~s~~~~nA~yWLGe~~y~qg~y~~Aa~~f~~~~k~~P~s~KApdallKlg~  223 (262)
T COG1729         144 LYNAALDLYKSGDYAEAEQAFQAFIKKYPNSTYTPNAYYWLGESLYAQGDYEDAAYIFARVVKDYPKSPKAPDALLKLGV  223 (262)
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCcccchhHHHHHHHHHhcccchHHHHHHHHHHHhCCCCCCChHHHHHHHH
Confidence            78999999999999999999999999999874   699999999999999999999999999998876   566666777


Q ss_pred             HHHHHHHHHHHHHHHHhcccCCCCCcccc
Q 017811          310 LAEHEKAVYKKQKEIYKGIFGPRPEPKQK  338 (365)
Q Consensus       310 l~~~~~~~~~~~k~~y~kmf~~~~~~~~~  338 (365)
                      +..++++.. ..+..|+.+.+.-|+....
T Consensus       224 ~~~~l~~~d-~A~atl~qv~k~YP~t~aA  251 (262)
T COG1729         224 SLGRLGNTD-EACATLQQVIKRYPGTDAA  251 (262)
T ss_pred             HHHHhcCHH-HHHHHHHHHHHHCCCCHHH
Confidence            766665544 5566688888877776654

>KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]

Probab=97.92  E-value=7.9e-05  Score=70.16  Aligned_cols=138  Identities=12%  Similarity=0.013  Sum_probs=99.1

Q ss_pred             HHHhhhhhhhhhhhhhHHHHHHHHHHHHHhhccchhhhhhhhHHHHHHHhhchhhhHHHHHHHHhcCHHHHHHHHHHHHh
Q 017811          182 ADRRKMDGNALFKEEKLEEAMQQYEMAIAYMGDDFMFQLFGKYRDMALAVKNPCHLNMAACLLKLKRYEEAIGQCSLVLG  261 (365)
Q Consensus       182 a~~~k~~G~~~~~~~~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~kl~~~~~A~~~~~~aL~  261 (365)
                      +..+...|..+|..++|..|+.+-.++|...|.+..                 .|.--|..+..+++..+|+-.|+.|..
T Consensus       300 a~~wfV~~~~l~~~K~~~rAL~~~eK~I~~~~r~~~-----------------alilKG~lL~~~~R~~~A~IaFR~Aq~  362 (564)
T KOG1174|consen  300 ASHWFVHAQLLYDEKKFERALNFVEKCIDSEPRNHE-----------------ALILKGRLLIALERHTQAVIAFRTAQM  362 (564)
T ss_pred             hhhhhhhhhhhhhhhhHHHHHHHHHHHhccCcccch-----------------HHHhccHHHHhccchHHHHHHHHHHHh
Confidence            344556777888899999999999999999887643                 366667777777777777777777777


Q ss_pred             CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCcHHHHHHHH-HHHHHHHHHHHHHHHHHhcccCCCCCcc
Q 017811          262 EDENNVKALFRRGKARAELGQTDAAREDFLKAGKFAPEDKSIARELR-LLAEHEKAVYKKQKEIYKGIFGPRPEPK  336 (365)
Q Consensus       262 ~~p~n~ka~~~~g~a~~~l~~~~~A~~~l~~al~l~P~n~~~~~~l~-~l~~~~~~~~~~~k~~y~kmf~~~~~~~  336 (365)
                      +.|..-..|--+-.+|++.|.+.+|...-+.++..-|++......++ .+..---.-+++.|+.|.+-+...|+-.
T Consensus       363 Lap~rL~~Y~GL~hsYLA~~~~kEA~~~An~~~~~~~~sA~~LtL~g~~V~~~dp~~rEKAKkf~ek~L~~~P~Y~  438 (564)
T KOG1174|consen  363 LAPYRLEIYRGLFHSYLAQKRFKEANALANWTIRLFQNSARSLTLFGTLVLFPDPRMREKAKKFAEKSLKINPIYT  438 (564)
T ss_pred             cchhhHHHHHHHHHHHHhhchHHHHHHHHHHHHHHhhcchhhhhhhcceeeccCchhHHHHHHHHHhhhccCCccH
Confidence            77777777777777777777777777777777777777777666664 3322222334466777777777777544

>PF13428 TPR_14: Tetratricopeptide repeat

Probab=97.91  E-value=2.1e-05  Score=51.08  Aligned_cols=42  Identities=19%  Similarity=0.130  Sum_probs=39.5

Q ss_pred             hhhHHHHHHHHhcCHHHHHHHHHHHHhCCCCCHHHHHHHHHH
Q 017811          235 CHLNMAACLLKLKRYEEAIGQCSLVLGEDENNVKALFRRGKA  276 (365)
Q Consensus       235 ~~~nla~~~~kl~~~~~A~~~~~~aL~~~p~n~ka~~~~g~a  276 (365)
                      +++.+|.+|..+|++++|+..++++++.+|+|+.+++.+|.+
T Consensus         3 ~~~~la~~~~~~G~~~~A~~~~~~~l~~~P~~~~a~~~La~l   44 (44)
T PF13428_consen    3 AWLALARAYRRLGQPDEAERLLRRALALDPDDPEAWRALAQL   44 (44)
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCHHHHHHhhhC
Confidence            488999999999999999999999999999999999998863

>COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only]

Probab=97.89  E-value=2.4e-05  Score=67.75  Aligned_cols=75  Identities=16%  Similarity=0.036  Sum_probs=69.5

Q ss_pred             hchhhhHHHHHHHHhcCHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCcHHHHHH
Q 017811          232 KNPCHLNMAACLLKLKRYEEAIGQCSLVLGEDENNVKALFRRGKARAELGQTDAAREDFLKAGKFAPEDKSIARE  306 (365)
Q Consensus       232 ~~~~~~nla~~~~kl~~~~~A~~~~~~aL~~~p~n~ka~~~~g~a~~~l~~~~~A~~~l~~al~l~P~n~~~~~~  306 (365)
                      +..+++.+|..|-.+|-|.-|..+++++|.+.|.-+.++..+|.-+..-|+|+.|.+.|..++++||.+.-+...
T Consensus        64 RA~l~fERGvlYDSlGL~~LAR~DftQaLai~P~m~~vfNyLG~Yl~~a~~fdaa~eaFds~~ELDp~y~Ya~lN  138 (297)
T COG4785          64 RAQLLFERGVLYDSLGLRALARNDFSQALAIRPDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAHLN  138 (297)
T ss_pred             HHHHHHHhcchhhhhhHHHHHhhhhhhhhhcCCCcHHHHHHHHHHHHhcccchHHHHHhhhHhccCCcchHHHhc
Confidence            566799999999999999999999999999999999999999999999999999999999999999997655544

>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala

Probab=97.88  E-value=0.00025  Score=70.81  Aligned_cols=56  Identities=16%  Similarity=0.090  Sum_probs=51.0

Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHHHHHHHHHHH
Q 017811          268 KALFRRGKARAELGQTDAAREDFLKAGKFAPEDKSIARELRLLAEHEKAVYKKQKE  323 (365)
Q Consensus       268 ka~~~~g~a~~~l~~~~~A~~~l~~al~l~P~n~~~~~~l~~l~~~~~~~~~~~k~  323 (365)
                      +++|.+|+.|..+|++++|+..+.+|+...|...+.....+++.++.++..++...
T Consensus       195 w~~~~lAqhyd~~g~~~~Al~~Id~aI~htPt~~ely~~KarilKh~G~~~~Aa~~  250 (517)
T PF12569_consen  195 WTLYFLAQHYDYLGDYEKALEYIDKAIEHTPTLVELYMTKARILKHAGDLKEAAEA  250 (517)
T ss_pred             HHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHCCCHHHHHHH
Confidence            68899999999999999999999999999999999999999998888887776654

N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].

>PRK10153 DNA-binding transcriptional activator CadC; Provisional

Probab=97.88  E-value=9.7e-05  Score=73.99  Aligned_cols=36  Identities=6%  Similarity=-0.164  Sum_probs=32.9

Q ss_pred             hhhhHHHHHHHHhcCHHHHHHHHHHHHhCCCCCHHH
Q 017811          234 PCHLNMAACLLKLKRYEEAIGQCSLVLGEDENNVKA  269 (365)
Q Consensus       234 ~~~~nla~~~~kl~~~~~A~~~~~~aL~~~p~n~ka  269 (365)
                      ..|..+|.++...|++++|+..|.+|+.++|.++.-
T Consensus       454 ~a~~~lG~~~~~~G~~~eA~~~~~~A~~L~P~~pt~  489 (517)
T PRK10153        454 LNYVLLGKVYELKGDNRLAADAYSTAFNLRPGENTL  489 (517)
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCchH
Confidence            358899999999999999999999999999998863

>KOG1127 consensus TPR repeat-containing protein [RNA processing and modification]

Probab=97.86  E-value=0.00012  Score=75.58  Aligned_cols=136  Identities=14%  Similarity=0.096  Sum_probs=104.7

Q ss_pred             hhhhhhhhhhHHHHHHHHHHHHHhhccchhhhh-------hhhHHHHHHH------------hhchhhhHHHHHHHHhcC
Q 017811          188 DGNALFKEEKLEEAMQQYEMAIAYMGDDFMFQL-------FGKYRDMALA------------VKNPCHLNMAACLLKLKR  248 (365)
Q Consensus       188 ~G~~~~~~~~y~~A~~~y~~al~~~~~~~~~~~-------~~~~~~~~~~------------~~~~~~~nla~~~~kl~~  248 (365)
                      .|..|-..-+..+|..+|.+|.++++.+.....       ...+.++...            ...-.+..+|..|++.++
T Consensus       498 LG~iYrd~~Dm~RA~kCf~KAFeLDatdaeaaaa~adtyae~~~we~a~~I~l~~~qka~a~~~k~nW~~rG~yyLea~n  577 (1238)
T KOG1127|consen  498 LGQIYRDSDDMKRAKKCFDKAFELDATDAEAAAASADTYAEESTWEEAFEICLRAAQKAPAFACKENWVQRGPYYLEAHN  577 (1238)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhcCCchhhhhHHHHHHHhhccccHHHHHHHHHHHhhhchHHHHHhhhhhccccccCccc
Confidence            555555555777899999999999887543211       0111121111            112234558999999999


Q ss_pred             HHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHHHHHHHHHHH
Q 017811          249 YEEAIGQCSLVLGEDENNVKALFRRGKARAELGQTDAAREDFLKAGKFAPEDKSIARELRLLAEHEKAVYKKQKE  323 (365)
Q Consensus       249 ~~~A~~~~~~aL~~~p~n~ka~~~~g~a~~~l~~~~~A~~~l~~al~l~P~n~~~~~~l~~l~~~~~~~~~~~k~  323 (365)
                      +..|+..++.+|..+|.+..+|.-+|.+|...|.|.-|++.|.+|..++|.+.-.+.....+.....++++....
T Consensus       578 ~h~aV~~fQsALR~dPkD~n~W~gLGeAY~~sGry~~AlKvF~kAs~LrP~s~y~~fk~A~~ecd~GkYkeald~  652 (1238)
T KOG1127|consen  578 LHGAVCEFQSALRTDPKDYNLWLGLGEAYPESGRYSHALKVFTKASLLRPLSKYGRFKEAVMECDNGKYKEALDA  652 (1238)
T ss_pred             hhhHHHHHHHHhcCCchhHHHHHHHHHHHHhcCceehHHHhhhhhHhcCcHhHHHHHHHHHHHHHhhhHHHHHHH
Confidence            999999999999999999999999999999999999999999999999999988888877777777777665433

>PRK15331 chaperone protein SicA; Provisional

Probab=97.84  E-value=9.9e-05  Score=61.66  Aligned_cols=94  Identities=12%  Similarity=-0.108  Sum_probs=85.4

Q ss_pred             hhHHHHHHHHhcCHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHHH
Q 017811          236 HLNMAACLLKLKRYEEAIGQCSLVLGEDENNVKALFRRGKARAELGQTDAAREDFLKAGKFAPEDKSIARELRLLAEHEK  315 (365)
Q Consensus       236 ~~nla~~~~kl~~~~~A~~~~~~aL~~~p~n~ka~~~~g~a~~~l~~~~~A~~~l~~al~l~P~n~~~~~~l~~l~~~~~  315 (365)
                      .+..|.-++..|++++|...|+-...+||.|.+.++-+|-|+..+++|++|+..|-.|..++++|+...-..+.|...++
T Consensus        40 iY~~Ay~~y~~Gk~~eA~~~F~~L~~~d~~n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l~~~dp~p~f~agqC~l~l~  119 (165)
T PRK15331         40 LYAHAYEFYNQGRLDEAETFFRFLCIYDFYNPDYTMGLAAVCQLKKQFQKACDLYAVAFTLLKNDYRPVFFTGQCQLLMR  119 (165)
T ss_pred             HHHHHHHHHHCCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccCCCCccchHHHHHHHhC
Confidence            67788889999999999999999999999999999999999999999999999999999999999999999999998888


Q ss_pred             HHHHHHHHHHhcccC
Q 017811          316 AVYKKQKEIYKGIFG  330 (365)
Q Consensus       316 ~~~~~~k~~y~kmf~  330 (365)
                      +...+... |.-...
T Consensus       120 ~~~~A~~~-f~~a~~  133 (165)
T PRK15331        120 KAAKARQC-FELVNE  133 (165)
T ss_pred             CHHHHHHH-HHHHHh
Confidence            87766554 655555

>PF12968 DUF3856: Domain of Unknown Function (DUF3856); InterPro: IPR024552 This domain of unknown function is found in a small group of tetratricopeptide-like proteins, which includes the uncharacterised protein Q8KAL8 from SWISSPROT

Probab=97.84  E-value=0.0011  Score=52.06  Aligned_cols=106  Identities=23%  Similarity=0.311  Sum_probs=78.1

Q ss_pred             hhhhhhhhhhhhHHHHHHHHHHHHHhhccchhhhhhhhHHHHHHHhhchhhhHHHHHHHHhcCHHHHHHHHHHHHh----
Q 017811          186 KMDGNALFKEEKLEEAMQQYEMAIAYMGDDFMFQLFGKYRDMALAVKNPCHLNMAACLLKLKRYEEAIGQCSLVLG----  261 (365)
Q Consensus       186 k~~G~~~~~~~~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~kl~~~~~A~~~~~~aL~----  261 (365)
                      ...|...+..|-|.+|...|++|.......+.-+-.  +.   ..+-.-||..|+.++..+|+|++++.....+|.    
T Consensus        13 Ls~ae~ql~~g~~~eAa~s~r~AM~~srtiP~eEaF--Dh---~GFDA~chA~Ls~A~~~Lgry~e~L~sA~~aL~YFNR   87 (144)
T PF12968_consen   13 LSDAERQLQDGAYEEAAASCRKAMEVSRTIPAEEAF--DH---DGFDAFCHAGLSGALAGLGRYDECLQSADRALRYFNR   87 (144)
T ss_dssp             HHHHHHHHHHT-HHHHHHHHHHHHHHHTTS-TTS-----H---HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHhhhHHHHHHHHHHHHHHhccCChHhhc--cc---ccHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHhh
Confidence            346667788899999999999999886442210000  01   222345899999999999999999999999883    


Q ss_pred             ---CCCC----CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Q 017811          262 ---EDEN----NVKALFRRGKARAELGQTDAAREDFLKAGKF  296 (365)
Q Consensus       262 ---~~p~----n~ka~~~~g~a~~~l~~~~~A~~~l~~al~l  296 (365)
                         ++.+    .+.+.|++|.++..+|+.++|+..|+++-++
T Consensus        88 RGEL~qdeGklWIaaVfsra~Al~~~Gr~~eA~~~fr~agEM  129 (144)
T PF12968_consen   88 RGELHQDEGKLWIAAVFSRAVALEGLGRKEEALKEFRMAGEM  129 (144)
T ss_dssp             H--TTSTHHHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred             ccccccccchhHHHHHHHHHHHHHhcCChHHHHHHHHHHHHH
Confidence               4444    4668999999999999999999999988653

The structure of Q8KAL8 is known and belongs to the SCOP all alpha class, TPR-like superfamily, CT2138-like family.; PDB: 2HR2_D.

>PF14853 Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repeat; PDB: 1IYG_A 1PC2_A 1NZN_A 3UUX_C 1Y8M_A 2PQR_A 2PQN_A 3O48_A

Probab=97.83  E-value=0.00013  Score=49.15  Aligned_cols=48  Identities=15%  Similarity=0.224  Sum_probs=37.8

Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHHH
Q 017811          268 KALFRRGKARAELGQTDAAREDFLKAGKFAPEDKSIARELRLLAEHEK  315 (365)
Q Consensus       268 ka~~~~g~a~~~l~~~~~A~~~l~~al~l~P~n~~~~~~l~~l~~~~~  315 (365)
                      ..+|.+|.++..+|+|++|......+|+++|+|..+......+..+..
T Consensus         2 d~lY~lAig~ykl~~Y~~A~~~~~~lL~~eP~N~Qa~~L~~~i~~~i~   49 (53)
T PF14853_consen    2 DCLYYLAIGHYKLGEYEKARRYCDALLEIEPDNRQAQSLKELIEDKIQ   49 (53)
T ss_dssp             HHHHHHHHHHHHTT-HHHHHHHHHHHHHHTTS-HHHHHHHHHHHHHHH
T ss_pred             hhHHHHHHHHHHhhhHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHHh
Confidence            467889999999999999999999999999999888877777655443

>PRK10866 outer membrane biogenesis protein BamD; Provisional

Probab=97.82  E-value=0.00059  Score=61.76  Aligned_cols=70  Identities=13%  Similarity=-0.033  Sum_probs=63.5

Q ss_pred             hhhHHHHHHHHhcCHHHHHHHHHHHHhCCCCCHH---HHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCcHHHH
Q 017811          235 CHLNMAACLLKLKRYEEAIGQCSLVLGEDENNVK---ALFRRGKARAELGQTDAAREDFLKAGKFAPEDKSIA  304 (365)
Q Consensus       235 ~~~nla~~~~kl~~~~~A~~~~~~aL~~~p~n~k---a~~~~g~a~~~l~~~~~A~~~l~~al~l~P~n~~~~  304 (365)
                      .++..|.-++..|+|++|+..++.++...|....   +.+++|.+|+.+++|++|+..+++.++++|+++.+-
T Consensus        34 ~~Y~~A~~~~~~g~y~~Ai~~f~~l~~~yP~s~~a~~a~l~la~ayy~~~~y~~A~~~~e~fi~~~P~~~~~~  106 (243)
T PRK10866         34 EIYATAQQKLQDGNWKQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNID  106 (243)
T ss_pred             HHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCcCCCchH
Confidence            3778999999999999999999999999998865   459999999999999999999999999999875443

>KOG4555 consensus TPR repeat-containing protein [Function unknown]

Probab=97.81  E-value=0.00031  Score=56.15  Aligned_cols=91  Identities=16%  Similarity=0.095  Sum_probs=70.9

Q ss_pred             hHHHHHHHHhcCHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCc-HH---HHHHHHHHHH
Q 017811          237 LNMAACLLKLKRYEEAIGQCSLVLGEDENNVKALFRRGKARAELGQTDAAREDFLKAGKFAPED-KS---IARELRLLAE  312 (365)
Q Consensus       237 ~nla~~~~kl~~~~~A~~~~~~aL~~~p~n~ka~~~~g~a~~~l~~~~~A~~~l~~al~l~P~n-~~---~~~~l~~l~~  312 (365)
                      ---|.+....|+.+.|++.|.++|.+-|.++.+|.++++++.-.|+.++|+.++.+|+++.... ..   +.-+.+.+++
T Consensus        47 El~~valaE~g~Ld~AlE~F~qal~l~P~raSayNNRAQa~RLq~~~e~ALdDLn~AleLag~~trtacqa~vQRg~lyR  126 (175)
T KOG4555|consen   47 ELKAIALAEAGDLDGALELFGQALCLAPERASAYNNRAQALRLQGDDEEALDDLNKALELAGDQTRTACQAFVQRGLLYR  126 (175)
T ss_pred             HHHHHHHHhccchHHHHHHHHHHHHhcccchHhhccHHHHHHHcCChHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHH
Confidence            3446778889999999999999999999999999999999999999999999999999997543 22   2222344433


Q ss_pred             HHHHHHHHHHHHHhcc
Q 017811          313 HEKAVYKKQKEIYKGI  328 (365)
Q Consensus       313 ~~~~~~~~~k~~y~km  328 (365)
                       +.....+.|..|...
T Consensus       127 -l~g~dd~AR~DFe~A  141 (175)
T KOG4555|consen  127 -LLGNDDAARADFEAA  141 (175)
T ss_pred             -HhCchHHHHHhHHHH
Confidence             334445566666655

>COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown]

Probab=97.77  E-value=0.00068  Score=57.55  Aligned_cols=101  Identities=18%  Similarity=0.194  Sum_probs=88.0

Q ss_pred             HhhhhhhhhhhhhhHHHHHHHHHHHHHhhc-cchhhhhhhhHHHHHHHhhchhhhHHHHHHHHhcCHHHHHHHHHHHHhC
Q 017811          184 RRKMDGNALFKEEKLEEAMQQYEMAIAYMG-DDFMFQLFGKYRDMALAVKNPCHLNMAACLLKLKRYEEAIGQCSLVLGE  262 (365)
Q Consensus       184 ~~k~~G~~~~~~~~y~~A~~~y~~al~~~~-~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~kl~~~~~A~~~~~~aL~~  262 (365)
                      .....|+.+...|+|.+|..+|.+++.-.= .+                 ..+++.+|.+++.++++..|....+++.+.
T Consensus        91 nr~rLa~al~elGr~~EA~~hy~qalsG~fA~d-----------------~a~lLglA~Aqfa~~~~A~a~~tLe~l~e~  153 (251)
T COG4700          91 NRYRLANALAELGRYHEAVPHYQQALSGIFAHD-----------------AAMLLGLAQAQFAIQEFAAAQQTLEDLMEY  153 (251)
T ss_pred             HHHHHHHHHHHhhhhhhhHHHHHHHhccccCCC-----------------HHHHHHHHHHHHhhccHHHHHHHHHHHhhc
Confidence            456789999999999999999999986432 22                 224889999999999999999999999999


Q ss_pred             CCC--CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCcH
Q 017811          263 DEN--NVKALFRRGKARAELGQTDAAREDFLKAGKFAPEDK  301 (365)
Q Consensus       263 ~p~--n~ka~~~~g~a~~~l~~~~~A~~~l~~al~l~P~n~  301 (365)
                      +|.  .+..+.-.|++|..+|.+.+|...|+.++...|+-.
T Consensus       154 ~pa~r~pd~~Ll~aR~laa~g~~a~Aesafe~a~~~ypg~~  194 (251)
T COG4700         154 NPAFRSPDGHLLFARTLAAQGKYADAESAFEVAISYYPGPQ  194 (251)
T ss_pred             CCccCCCCchHHHHHHHHhcCCchhHHHHHHHHHHhCCCHH
Confidence            885  577888999999999999999999999999998743

>KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics]

Probab=97.77  E-value=0.00043  Score=68.61  Aligned_cols=98  Identities=16%  Similarity=0.139  Sum_probs=84.4

Q ss_pred             HHhhhhhhhhhhhhhHHHHHHHHHHHHHhhccchhhhhhhhHHHHHHHhhchhhhHHHHHHHHhcCHHHHHHHHHHHHhC
Q 017811          183 DRRKMDGNALFKEEKLEEAMQQYEMAIAYMGDDFMFQLFGKYRDMALAVKNPCHLNMAACLLKLKRYEEAIGQCSLVLGE  262 (365)
Q Consensus       183 ~~~k~~G~~~~~~~~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~kl~~~~~A~~~~~~aL~~  262 (365)
                      -.|+..|-.+-..++|.+||++|+.|+.+.++|..                 ++.-+|..+.++++|+-....-.+.|++
T Consensus        76 vCwHv~gl~~R~dK~Y~eaiKcy~nAl~~~~dN~q-----------------ilrDlslLQ~QmRd~~~~~~tr~~LLql  138 (700)
T KOG1156|consen   76 VCWHVLGLLQRSDKKYDEAIKCYRNALKIEKDNLQ-----------------ILRDLSLLQIQMRDYEGYLETRNQLLQL  138 (700)
T ss_pred             hhHHHHHHHHhhhhhHHHHHHHHHHHHhcCCCcHH-----------------HHHHHHHHHHHHHhhhhHHHHHHHHHHh
Confidence            35778888888999999999999999999998733                 4888899999999999999988899999


Q ss_pred             CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC
Q 017811          263 DENNVKALFRRGKARAELGQTDAAREDFLKAGKFA  297 (365)
Q Consensus       263 ~p~n~ka~~~~g~a~~~l~~~~~A~~~l~~al~l~  297 (365)
                      .|.+--.|+-.|.++.-+|+|..|...++...+..
T Consensus       139 ~~~~ra~w~~~Avs~~L~g~y~~A~~il~ef~~t~  173 (700)
T KOG1156|consen  139 RPSQRASWIGFAVAQHLLGEYKMALEILEEFEKTQ  173 (700)
T ss_pred             hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence            99999999999999999999988887776655544

>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]

Probab=97.74  E-value=4.1e-05  Score=46.34  Aligned_cols=32  Identities=31%  Similarity=0.367  Sum_probs=29.5

Q ss_pred             hhhHHHHHHHHhcCHHHHHHHHHHHHhCCCCC
Q 017811          235 CHLNMAACLLKLKRYEEAIGQCSLVLGEDENN  266 (365)
Q Consensus       235 ~~~nla~~~~kl~~~~~A~~~~~~aL~~~p~n  266 (365)
                      +++++|.+|+++|+|++|+.+|++++.++|+|
T Consensus         3 ~~~~lg~~~~~~~~~~~A~~~~~~al~l~p~~   34 (34)
T PF07719_consen    3 AWYYLGQAYYQLGNYEEAIEYFEKALELDPNN   34 (34)
T ss_dssp             HHHHHHHHHHHTT-HHHHHHHHHHHHHHSTTS
T ss_pred             HHHHHHHHHHHhCCHHHHHHHHHHHHHHCcCC
Confidence            58999999999999999999999999999986

It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....

>KOG4814 consensus Uncharacterized conserved protein [Function unknown]

Probab=97.73  E-value=0.0017  Score=64.48  Aligned_cols=103  Identities=15%  Similarity=0.093  Sum_probs=90.5

Q ss_pred             HhhhhhhhhhhhhhHHHHHHHHHHHHHhhccchhhhhhhhHHHHHHHhhchhhhHHHHHHHHhcCHHHHHHHHHHHHhCC
Q 017811          184 RRKMDGNALFKEEKLEEAMQQYEMAIAYMGDDFMFQLFGKYRDMALAVKNPCHLNMAACLLKLKRYEEAIGQCSLVLGED  263 (365)
Q Consensus       184 ~~k~~G~~~~~~~~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~kl~~~~~A~~~~~~aL~~~  263 (365)
                      -+.+.+..+|+..+|..|++.|...+...|.|...           ....++.-+++.||+++.+.+.|.+++..|-+.|
T Consensus       356 iLWn~A~~~F~~~~Y~~s~~~y~~Sl~~i~~D~~~-----------~~FaK~qR~l~~CYL~L~QLD~A~E~~~EAE~~d  424 (872)
T KOG4814|consen  356 LLWNTAKKLFKMEKYVVSIRFYKLSLKDIISDNYS-----------DRFAKIQRALQVCYLKLEQLDNAVEVYQEAEEVD  424 (872)
T ss_pred             HHHHhhHHHHHHHHHHHHHHHHHHHHHhccchhhh-----------hHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhhc
Confidence            45678899999999999999999999999876432           1226678899999999999999999999999999


Q ss_pred             CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC
Q 017811          264 ENNVKALFRRGKARAELGQTDAAREDFLKAGKFA  297 (365)
Q Consensus       264 p~n~ka~~~~g~a~~~l~~~~~A~~~l~~al~l~  297 (365)
                      |.++-.-+..-++...-+.-++|+..+.+.....
T Consensus       425 ~~~~l~q~~~~~~~~~E~~Se~AL~~~~~~~s~~  458 (872)
T KOG4814|consen  425 RQSPLCQLLMLQSFLAEDKSEEALTCLQKIKSSE  458 (872)
T ss_pred             cccHHHHHHHHHHHHHhcchHHHHHHHHHHHhhh
Confidence            9999999999999999999999999988877653

>PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment

Probab=97.70  E-value=0.00019  Score=66.65  Aligned_cols=92  Identities=23%  Similarity=0.268  Sum_probs=74.4

Q ss_pred             hHHHHHHHHHHHHHhhccchhhhhhhhHHHHHHHhhchhhhHHHHHHHHhcCHHHHHHHHHHHHhCCCCCHHHHHHHHHH
Q 017811          197 KLEEAMQQYEMAIAYMGDDFMFQLFGKYRDMALAVKNPCHLNMAACLLKLKRYEEAIGQCSLVLGEDENNVKALFRRGKA  276 (365)
Q Consensus       197 ~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~kl~~~~~A~~~~~~aL~~~p~n~ka~~~~g~a  276 (365)
                      +|.+|...|+......+..                 ..+++.+|.|++.+|+|++|...+.+++..+|+++.++.+++.+
T Consensus       182 ~~~~A~y~f~El~~~~~~t-----------------~~~lng~A~~~l~~~~~~eAe~~L~~al~~~~~~~d~LaNliv~  244 (290)
T PF04733_consen  182 KYQDAFYIFEELSDKFGST-----------------PKLLNGLAVCHLQLGHYEEAEELLEEALEKDPNDPDTLANLIVC  244 (290)
T ss_dssp             CCCHHHHHHHHHHCCS--S-----------------HHHHHHHHHHHHHCT-HHHHHHHHHHHCCC-CCHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHhccCCC-----------------HHHHHHHHHHHHHhCCHHHHHHHHHHHHHhccCCHHHHHHHHHH
Confidence            5889999999966554433                 23478899999999999999999999999999999999999999


Q ss_pred             HHHcCCH-HHHHHHHHHHHhhCCCcHHHHH
Q 017811          277 RAELGQT-DAAREDFLKAGKFAPEDKSIAR  305 (365)
Q Consensus       277 ~~~l~~~-~~A~~~l~~al~l~P~n~~~~~  305 (365)
                      ...+|+- +.+...+.+....+|+++-+..
T Consensus       245 ~~~~gk~~~~~~~~l~qL~~~~p~h~~~~~  274 (290)
T PF04733_consen  245 SLHLGKPTEAAERYLSQLKQSNPNHPLVKD  274 (290)
T ss_dssp             HHHTT-TCHHHHHHHHHCHHHTTTSHHHHH
T ss_pred             HHHhCCChhHHHHHHHHHHHhCCCChHHHH
Confidence            9999998 6677788888889999875543

This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A.

>PRK10941 hypothetical protein; Provisional

Probab=97.69  E-value=0.00043  Score=63.30  Aligned_cols=80  Identities=21%  Similarity=0.133  Sum_probs=71.8

Q ss_pred             hhchhhhHHHHHHHHhcCHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCcHHHHHHHHHH
Q 017811          231 VKNPCHLNMAACLLKLKRYEEAIGQCSLVLGEDENNVKALFRRGKARAELGQTDAAREDFLKAGKFAPEDKSIARELRLL  310 (365)
Q Consensus       231 ~~~~~~~nla~~~~kl~~~~~A~~~~~~aL~~~p~n~ka~~~~g~a~~~l~~~~~A~~~l~~al~l~P~n~~~~~~l~~l  310 (365)
                      +....+.|+=.+|++.++|..|+.+++.+|.++|+++--+--||.+|.++|.+..|..+|+..++..|+++.+......+
T Consensus       179 il~Rml~nLK~~~~~~~~~~~AL~~~e~ll~l~P~dp~e~RDRGll~~qL~c~~~A~~DL~~fl~~~P~dp~a~~ik~ql  258 (269)
T PRK10941        179 VIRKLLDTLKAALMEEKQMELALRASEALLQFDPEDPYEIRDRGLIYAQLDCEHVALSDLSYFVEQCPEDPISEMIRAQI  258 (269)
T ss_pred             HHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHHhCCCchhHHHHHHHH
Confidence            44556889999999999999999999999999999999999999999999999999999999999999988766444443

>KOG4507 consensus Uncharacterized conserved protein, contains TPR repeats [Function unknown]

Probab=97.68  E-value=0.00013  Score=71.37  Aligned_cols=108  Identities=17%  Similarity=0.067  Sum_probs=95.0

Q ss_pred             hhhhhhhhhHHHHHHHHHHHHHhhccchhhhhhhhHHHHHHHhhchhhhHHHHHHHHhcCHHHHHHHHHHHHhCCCCCHH
Q 017811          189 GNALFKEEKLEEAMQQYEMAIAYMGDDFMFQLFGKYRDMALAVKNPCHLNMAACLLKLKRYEEAIGQCSLVLGEDENNVK  268 (365)
Q Consensus       189 G~~~~~~~~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~kl~~~~~A~~~~~~aL~~~p~n~k  268 (365)
                      |--+-..|+-..|+.+...|+...|.....                ...|||.+.++.+-...|-..+.++|.+....+-
T Consensus       614 glywr~~gn~~~a~~cl~~a~~~~p~~~~v----------------~~v~la~~~~~~~~~~da~~~l~q~l~~~~sepl  677 (886)
T KOG4507|consen  614 GLYWRAVGNSTFAIACLQRALNLAPLQQDV----------------PLVNLANLLIHYGLHLDATKLLLQALAINSSEPL  677 (886)
T ss_pred             cceeeecCCcHHHHHHHHHHhccChhhhcc----------------cHHHHHHHHHHhhhhccHHHHHHHHHhhcccCch
Confidence            333445789999999999999888763222                2789999999999999999999999999988899


Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHH
Q 017811          269 ALFRRGKARAELGQTDAAREDFLKAGKFAPEDKSIARELRLLAE  312 (365)
Q Consensus       269 a~~~~g~a~~~l~~~~~A~~~l~~al~l~P~n~~~~~~l~~l~~  312 (365)
                      .+|-+|++++.+.+.+.|++.|+.|++++|++..+...|..+..
T Consensus       678 ~~~~~g~~~l~l~~i~~a~~~~~~a~~~~~~~~~~~~~l~~i~c  721 (886)
T KOG4507|consen  678 TFLSLGNAYLALKNISGALEAFRQALKLTTKCPECENSLKLIRC  721 (886)
T ss_pred             HHHhcchhHHHHhhhHHHHHHHHHHHhcCCCChhhHHHHHHHHH
Confidence            99999999999999999999999999999999999999887754

>KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms]

Probab=97.65  E-value=7.8e-05  Score=70.18  Aligned_cols=110  Identities=17%  Similarity=0.240  Sum_probs=85.3

Q ss_pred             HHHHHHHhhhhhhhhhhhhhHHHHHHHHHHHHHhhccchhhhhhhhHHHHHHHhhchhhhHHHHHHHHhcCHHHHHHHHH
Q 017811          178 RIGAADRRKMDGNALFKEEKLEEAMQQYEMAIAYMGDDFMFQLFGKYRDMALAVKNPCHLNMAACLLKLKRYEEAIGQCS  257 (365)
Q Consensus       178 ~~~~a~~~k~~G~~~~~~~~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~kl~~~~~A~~~~~  257 (365)
                      +......+-+.||.|+-.|+|+.||..-+.-|.+...   |+.        ......++.|+|.||+-+|+|+.|+++|+
T Consensus       191 r~aqGRa~GnLGNTyYlLGdf~~ai~~H~~RL~ia~e---fGD--------rAaeRRA~sNlgN~hiflg~fe~A~ehYK  259 (639)
T KOG1130|consen  191 RLAQGRAYGNLGNTYYLLGDFDQAIHFHKLRLEIAQE---FGD--------RAAERRAHSNLGNCHIFLGNFELAIEHYK  259 (639)
T ss_pred             HHhhcchhcccCceeeeeccHHHHHHHHHHHHHHHHH---hhh--------HHHHHHhhcccchhhhhhcccHhHHHHHH
Confidence            4455556778999999999999999998887776532   111        11124569999999999999999999999


Q ss_pred             HHHh----CCCC--CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC
Q 017811          258 LVLG----EDEN--NVKALFRRGKARAELGQTDAAREDFLKAGKFAP  298 (365)
Q Consensus       258 ~aL~----~~p~--n~ka~~~~g~a~~~l~~~~~A~~~l~~al~l~P  298 (365)
                      ..+.    +...  -+..-|.+|.+|.-+.+|+.|+.++++-|.+.-
T Consensus       260 ~tl~LAielg~r~vEAQscYSLgNtytll~e~~kAI~Yh~rHLaIAq  306 (639)
T KOG1130|consen  260 LTLNLAIELGNRTVEAQSCYSLGNTYTLLKEVQKAITYHQRHLAIAQ  306 (639)
T ss_pred             HHHHHHHHhcchhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence            8654    3332  346789999999999999999999998877643

>PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A

Probab=97.65  E-value=8.7e-05  Score=44.94  Aligned_cols=33  Identities=33%  Similarity=0.504  Sum_probs=24.7

Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCc
Q 017811          268 KALFRRGKARAELGQTDAAREDFLKAGKFAPED  300 (365)
Q Consensus       268 ka~~~~g~a~~~l~~~~~A~~~l~~al~l~P~n  300 (365)
                      ++|+.+|.+|..+|++++|...|+++++++|+|
T Consensus         2 ~~~~~lg~~y~~~~~~~~A~~~~~~a~~~~~~n   34 (34)
T PF13181_consen    2 EAYYNLGKIYEQLGDYEEALEYFEKALELNPDN   34 (34)
T ss_dssp             HHHHHHHHHHHHTTSHHHHHHHHHHHHHHHTT-
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC
Confidence            567777788888888888888888887777743

...

>KOG1586 consensus Protein required for fusion of vesicles in vesicular transport, alpha-SNAP [Intracellular trafficking, secretion, and vesicular transport]

Probab=97.62  E-value=0.0076  Score=53.06  Aligned_cols=152  Identities=18%  Similarity=0.237  Sum_probs=100.7

Q ss_pred             Hhhhhhhhhhhh-hhHHHHHHHHHHHHHhhccchhhhhhhhHHHHHHHhhchhhhHHHHHHHHhcCHHHHHHHHHHHHhC
Q 017811          184 RRKMDGNALFKE-EKLEEAMQQYEMAIAYMGDDFMFQLFGKYRDMALAVKNPCHLNMAACLLKLKRYEEAIGQCSLVLGE  262 (365)
Q Consensus       184 ~~k~~G~~~~~~-~~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~kl~~~~~A~~~~~~aL~~  262 (365)
                      .+...|..|-.. .++..||.+|++|-+....+..           .....+|++..|..-..+++|.+|+..|.++...
T Consensus       115 ~~~~iaEiyEsdl~d~ekaI~~YE~Aae~yk~ees-----------~ssANKC~lKvA~yaa~leqY~~Ai~iyeqva~~  183 (288)
T KOG1586|consen  115 HHIEIAEIYESDLQDFEKAIAHYEQAAEYYKGEES-----------VSSANKCLLKVAQYAAQLEQYSKAIDIYEQVARS  183 (288)
T ss_pred             hhhhHHHHHhhhHHHHHHHHHHHHHHHHHHcchhh-----------hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            344555555544 7888999999999888765322           3345678999999999999999999999998764


Q ss_pred             CCCC------HHH-HHHHHHHHHHcCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHHHHHHHHHHHHHh---cccCCC
Q 017811          263 DENN------VKA-LFRRGKARAELGQTDAAREDFLKAGKFAPEDKSIARELRLLAEHEKAVYKKQKEIYK---GIFGPR  332 (365)
Q Consensus       263 ~p~n------~ka-~~~~g~a~~~l~~~~~A~~~l~~al~l~P~n~~~~~~l~~l~~~~~~~~~~~k~~y~---kmf~~~  332 (365)
                      .-+|      +|- ++..|.|++-..+.-.|...+++..+++|...+.+ +.+.++..+...++.....|.   +-|+.-
T Consensus       184 s~~n~LLKys~KdyflkAgLChl~~~D~v~a~~ALeky~~~dP~F~dsR-Eckflk~L~~aieE~d~e~fte~vkefDsi  262 (288)
T KOG1586|consen  184 SLDNNLLKYSAKDYFLKAGLCHLCKADEVNAQRALEKYQELDPAFTDSR-ECKFLKDLLDAIEEQDIEKFTEVVKEFDSI  262 (288)
T ss_pred             hccchHHHhHHHHHHHHHHHHhHhcccHHHHHHHHHHHHhcCCcccccH-HHHHHHHHHHHHhhhhHHHHHHHHHhhhcc
Confidence            4333      444 45778888888999999999999999999865444 223333333333333334444   234333


Q ss_pred             CCccccchhHHHHHHHHHHHHHHHH
Q 017811          333 PEPKQKKNWLIIFWQLLVSLVLGLF  357 (365)
Q Consensus       333 ~~~~~~~~~~~~~~~~~~~~~~~~~  357 (365)
                      .          ..-.|..++.+.+=
T Consensus       263 s----------rLD~W~ttiLlkiK  277 (288)
T KOG1586|consen  263 S----------RLDQWKTTILLKIK  277 (288)
T ss_pred             c----------hHHHHHHHHHHHHH
Confidence            3          33456666655543

>KOG0495 consensus HAT repeat protein [RNA processing and modification]

Probab=97.61  E-value=0.00079  Score=66.94  Aligned_cols=148  Identities=16%  Similarity=0.103  Sum_probs=106.2

Q ss_pred             hhhhhhhhhhhhhHHHHHHHHHHHHHhhccchhh-------hhhhhHHHHHHHhhc---------hhhhHHHHHHHHhcC
Q 017811          185 RKMDGNALFKEEKLEEAMQQYEMAIAYMGDDFMF-------QLFGKYRDMALAVKN---------PCHLNMAACLLKLKR  248 (365)
Q Consensus       185 ~k~~G~~~~~~~~y~~A~~~y~~al~~~~~~~~~-------~~~~~~~~~~~~~~~---------~~~~nla~~~~kl~~  248 (365)
                      +..-+..++..|+...|......|++..|.....       .....+.+....+..         .+|+.-+...--+++
T Consensus       587 wlM~ake~w~agdv~~ar~il~~af~~~pnseeiwlaavKle~en~e~eraR~llakar~~sgTeRv~mKs~~~er~ld~  666 (913)
T KOG0495|consen  587 WLMYAKEKWKAGDVPAARVILDQAFEANPNSEEIWLAAVKLEFENDELERARDLLAKARSISGTERVWMKSANLERYLDN  666 (913)
T ss_pred             HHHHHHHHHhcCCcHHHHHHHHHHHHhCCCcHHHHHHHHHHhhccccHHHHHHHHHHHhccCCcchhhHHHhHHHHHhhh
Confidence            3344556677788888888888888888764321       011112222222222         345555666666889


Q ss_pred             HHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Q 017811          249 YEEAIGQCSLVLGEDENNVKALFRRGKARAELGQTDAAREDFLKAGKFAPEDKSIARELRLLAEHEKAVYKKQKEIYKGI  328 (365)
Q Consensus       249 ~~~A~~~~~~aL~~~p~n~ka~~~~g~a~~~l~~~~~A~~~l~~al~l~P~n~~~~~~l~~l~~~~~~~~~~~k~~y~km  328 (365)
                      .++|+..|+.+|+..|...|.|..+|+++..+++.+.|...|...++..|+.....-.|..+.++.. ..-+.|..+.+.
T Consensus       667 ~eeA~rllEe~lk~fp~f~Kl~lmlGQi~e~~~~ie~aR~aY~~G~k~cP~~ipLWllLakleEk~~-~~~rAR~ildra  745 (913)
T KOG0495|consen  667 VEEALRLLEEALKSFPDFHKLWLMLGQIEEQMENIEMAREAYLQGTKKCPNSIPLWLLLAKLEEKDG-QLVRARSILDRA  745 (913)
T ss_pred             HHHHHHHHHHHHHhCCchHHHHHHHhHHHHHHHHHHHHHHHHHhccccCCCCchHHHHHHHHHHHhc-chhhHHHHHHHH
Confidence            9999999999999999999999999999999999999999999999999999999999988877665 444555656555


Q ss_pred             cCCCC
Q 017811          329 FGPRP  333 (365)
Q Consensus       329 f~~~~  333 (365)
                      .-..|
T Consensus       746 rlkNP  750 (913)
T KOG0495|consen  746 RLKNP  750 (913)
T ss_pred             HhcCC
Confidence            43333

>KOG1127 consensus TPR repeat-containing protein [RNA processing and modification]

Probab=97.60  E-value=0.00023  Score=73.56  Aligned_cols=111  Identities=12%  Similarity=0.062  Sum_probs=98.1

Q ss_pred             HhhhhhhhhhhhhhHHHHHHHHHHHHHhhccchhhhhhhhHHHHHHHhhchhhhHHHHHHHHhcCHHHHHHHHHHHHhCC
Q 017811          184 RRKMDGNALFKEEKLEEAMQQYEMAIAYMGDDFMFQLFGKYRDMALAVKNPCHLNMAACLLKLKRYEEAIGQCSLVLGED  263 (365)
Q Consensus       184 ~~k~~G~~~~~~~~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~kl~~~~~A~~~~~~aL~~~  263 (365)
                      .+..+|-.+.+.+++..|+..++.|++..|.+..                 ++..+|.+|...|.|..|+..+++|..++
T Consensus       564 nW~~rG~yyLea~n~h~aV~~fQsALR~dPkD~n-----------------~W~gLGeAY~~sGry~~AlKvF~kAs~Lr  626 (1238)
T KOG1127|consen  564 NWVQRGPYYLEAHNLHGAVCEFQSALRTDPKDYN-----------------LWLGLGEAYPESGRYSHALKVFTKASLLR  626 (1238)
T ss_pred             hhhhccccccCccchhhHHHHHHHHhcCCchhHH-----------------HHHHHHHHHHhcCceehHHHhhhhhHhcC
Confidence            4556899999999999999999999999999754                 48999999999999999999999999999


Q ss_pred             CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHH
Q 017811          264 ENNVKALFRRGKARAELGQTDAAREDFLKAGKFAPEDKSIARELRLLA  311 (365)
Q Consensus       264 p~n~ka~~~~g~a~~~l~~~~~A~~~l~~al~l~P~n~~~~~~l~~l~  311 (365)
                      |.+.-+.|..+.....+|+|.+|+..+...+.....-..++..+..+.
T Consensus       627 P~s~y~~fk~A~~ecd~GkYkeald~l~~ii~~~s~e~~~q~gLaE~~  674 (1238)
T KOG1127|consen  627 PLSKYGRFKEAVMECDNGKYKEALDALGLIIYAFSLERTGQNGLAESV  674 (1238)
T ss_pred             cHhHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhhhhHHHHH
Confidence            999999999999999999999999999998887655555555555443

>KOG3785 consensus Uncharacterized conserved protein [Function unknown]

Probab=97.55  E-value=0.00043  Score=64.14  Aligned_cols=99  Identities=20%  Similarity=0.282  Sum_probs=77.0

Q ss_pred             hhhhhhhhHHHHHHHHHHHHHhhccchhhhhhhhHHHHHHHhhchhhhHHHHHHHHhcCHHHHHHHHHHHHhCCCCCHHH
Q 017811          190 NALFKEEKLEEAMQQYEMAIAYMGDDFMFQLFGKYRDMALAVKNPCHLNMAACLLKLKRYEEAIGQCSLVLGEDENNVKA  269 (365)
Q Consensus       190 ~~~~~~~~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~kl~~~~~A~~~~~~aL~~~p~n~ka  269 (365)
                      ..+..+.+|..|+...+-.+......       +         ..+-+.+|.|++++|+|++|+..|+.+...+..+.+.
T Consensus        30 edfls~rDytGAislLefk~~~~~EE-------E---------~~~~lWia~C~fhLgdY~~Al~~Y~~~~~~~~~~~el   93 (557)
T KOG3785|consen   30 EDFLSNRDYTGAISLLEFKLNLDREE-------E---------DSLQLWIAHCYFHLGDYEEALNVYTFLMNKDDAPAEL   93 (557)
T ss_pred             HHHHhcccchhHHHHHHHhhccchhh-------h---------HHHHHHHHHHHHhhccHHHHHHHHHHHhccCCCCccc
Confidence            34567789999999887776433211       0         2346789999999999999999999999988889999


Q ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHhhCCCcHHHHHHHH
Q 017811          270 LFRRGKARAELGQTDAAREDFLKAGKFAPEDKSIARELR  308 (365)
Q Consensus       270 ~~~~g~a~~~l~~~~~A~~~l~~al~l~P~n~~~~~~l~  308 (365)
                      ..++|.|+.-+|.|.+|...-.+|    |+++-..+.+-
T Consensus        94 ~vnLAcc~FyLg~Y~eA~~~~~ka----~k~pL~~RLlf  128 (557)
T KOG3785|consen   94 GVNLACCKFYLGQYIEAKSIAEKA----PKTPLCIRLLF  128 (557)
T ss_pred             chhHHHHHHHHHHHHHHHHHHhhC----CCChHHHHHHH
Confidence            999999999999999998776655    55544444433

>KOG0495 consensus HAT repeat protein [RNA processing and modification]

Probab=97.53  E-value=0.0014  Score=65.18  Aligned_cols=126  Identities=16%  Similarity=0.032  Sum_probs=103.1

Q ss_pred             hhhhhhhhhhhhHHHHHHHHHHHHHhhccchhhhhhhhHHHHHHHhhchhhhHHHHHHHHhcCHHHHHHHHHHHHhCCCC
Q 017811          186 KMDGNALFKEEKLEEAMQQYEMAIAYMGDDFMFQLFGKYRDMALAVKNPCHLNMAACLLKLKRYEEAIGQCSLVLGEDEN  265 (365)
Q Consensus       186 k~~G~~~~~~~~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~kl~~~~~A~~~~~~aL~~~p~  265 (365)
                      ...++...-.++.++|++++++||+.+|..                 .++|+-+|+++-++++.+.|...|...++..|.
T Consensus       655 mKs~~~er~ld~~eeA~rllEe~lk~fp~f-----------------~Kl~lmlGQi~e~~~~ie~aR~aY~~G~k~cP~  717 (913)
T KOG0495|consen  655 MKSANLERYLDNVEEALRLLEEALKSFPDF-----------------HKLWLMLGQIEEQMENIEMAREAYLQGTKKCPN  717 (913)
T ss_pred             HHHhHHHHHhhhHHHHHHHHHHHHHhCCch-----------------HHHHHHHhHHHHHHHHHHHHHHHHHhccccCCC
Confidence            334455556788889999999999999875                 345999999999999999999999999999999


Q ss_pred             CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Q 017811          266 NVKALFRRGKARAELGQTDAAREDFLKAGKFAPEDKSIARELRLLAEHEKAVYKKQKEIYKGI  328 (365)
Q Consensus       266 n~ka~~~~g~a~~~l~~~~~A~~~l~~al~l~P~n~~~~~~l~~l~~~~~~~~~~~k~~y~km  328 (365)
                      .+-.|.-+++.-...|..-.|...|.++.-.+|+|....-+.-+...+.+....++-.|-+.+
T Consensus       718 ~ipLWllLakleEk~~~~~rAR~ildrarlkNPk~~~lwle~Ir~ElR~gn~~~a~~lmakAL  780 (913)
T KOG0495|consen  718 SIPLWLLLAKLEEKDGQLVRARSILDRARLKNPKNALLWLESIRMELRAGNKEQAELLMAKAL  780 (913)
T ss_pred             CchHHHHHHHHHHHhcchhhHHHHHHHHHhcCCCcchhHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence            999999999999999999999999999999999998877666665555555544444443333

>KOG4642 consensus Chaperone-dependent E3 ubiquitin protein ligase (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]

Probab=97.47  E-value=0.0004  Score=61.06  Aligned_cols=85  Identities=18%  Similarity=0.091  Sum_probs=75.5

Q ss_pred             HHHHHHHhcCHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHHHHHH
Q 017811          239 MAACLLKLKRYEEAIGQCSLVLGEDENNVKALFRRGKARAELGQTDAAREDFLKAGKFAPEDKSIARELRLLAEHEKAVY  318 (365)
Q Consensus       239 la~~~~kl~~~~~A~~~~~~aL~~~p~n~ka~~~~g~a~~~l~~~~~A~~~l~~al~l~P~n~~~~~~l~~l~~~~~~~~  318 (365)
                      -|.+++.-..|..|+..|.++|.++|..+..|-+++.||+++.+|+.+..+-++|++++|+.......++.+....+.+.
T Consensus        16 ~gnk~f~~k~y~~ai~~y~raI~~nP~~~~Y~tnralchlk~~~~~~v~~dcrralql~~N~vk~h~flg~~~l~s~~~~   95 (284)
T KOG4642|consen   16 QGNKCFIPKRYDDAIDCYSRAICINPTVASYYTNRALCHLKLKHWEPVEEDCRRALQLDPNLVKAHYFLGQWLLQSKGYD   95 (284)
T ss_pred             ccccccchhhhchHHHHHHHHHhcCCCcchhhhhHHHHHHHhhhhhhhhhhHHHHHhcChHHHHHHHHHHHHHHhhcccc
Confidence            35677788899999999999999999999999999999999999999999999999999999888888888877777666


Q ss_pred             HHHHH
Q 017811          319 KKQKE  323 (365)
Q Consensus       319 ~~~k~  323 (365)
                      +..+.
T Consensus        96 eaI~~  100 (284)
T KOG4642|consen   96 EAIKV  100 (284)
T ss_pred             HHHHH
Confidence            65544

>PF13512 TPR_18: Tetratricopeptide repeat

Probab=97.44  E-value=0.00074  Score=55.21  Aligned_cols=70  Identities=19%  Similarity=0.108  Sum_probs=64.1

Q ss_pred             hhhHHHHHHHHhcCHHHHHHHHHHHHhCCCCC---HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCcHHHH
Q 017811          235 CHLNMAACLLKLKRYEEAIGQCSLVLGEDENN---VKALFRRGKARAELGQTDAAREDFLKAGKFAPEDKSIA  304 (365)
Q Consensus       235 ~~~nla~~~~kl~~~~~A~~~~~~aL~~~p~n---~ka~~~~g~a~~~l~~~~~A~~~l~~al~l~P~n~~~~  304 (365)
                      .+++-|...++.|+|.+|+..++.+....|-.   ..|.+.+|.+|+..++|++|+..+++-++|+|.++.+-
T Consensus        12 ~ly~~a~~~l~~~~Y~~A~~~le~L~~ryP~g~ya~qAqL~l~yayy~~~~y~~A~a~~~rFirLhP~hp~vd   84 (142)
T PF13512_consen   12 ELYQEAQEALQKGNYEEAIKQLEALDTRYPFGEYAEQAQLDLAYAYYKQGDYEEAIAAYDRFIRLHPTHPNVD   84 (142)
T ss_pred             HHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCCCcc
Confidence            38899999999999999999999999988865   57999999999999999999999999999999986543

>PF13431 TPR_17: Tetratricopeptide repeat

Probab=97.42  E-value=0.00012  Score=44.53  Aligned_cols=33  Identities=33%  Similarity=0.341  Sum_probs=29.8

Q ss_pred             HHHHHHHhhccchhhhhhhhHHHHHHHhhchhhhHHHHHHHHhcCHHHHH
Q 017811          204 QYEMAIAYMGDDFMFQLFGKYRDMALAVKNPCHLNMAACLLKLKRYEEAI  253 (365)
Q Consensus       204 ~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~kl~~~~~A~  253 (365)
                      +|++||++.|++..                 +|+|+|.+|...|++++|+
T Consensus         1 ~y~kAie~~P~n~~-----------------a~~nla~~~~~~g~~~~A~   33 (34)
T PF13431_consen    1 CYKKAIELNPNNAE-----------------AYNNLANLYLNQGDYEEAI   33 (34)
T ss_pred             ChHHHHHHCCCCHH-----------------HHHHHHHHHHHCcCHHhhc
Confidence            48999999999855                 4999999999999999986

>KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms]

Probab=97.42  E-value=0.00068  Score=64.02  Aligned_cols=103  Identities=17%  Similarity=0.099  Sum_probs=83.0

Q ss_pred             HHhhhhhhhhhhhhhHHHHHHHHHHHHHhhccchhhhhhhhHHHHHHHhhchhhhHHHHHHHHhcCHHHHHHHHHHHHhC
Q 017811          183 DRRKMDGNALFKEEKLEEAMQQYEMAIAYMGDDFMFQLFGKYRDMALAVKNPCHLNMAACLLKLKRYEEAIGQCSLVLGE  262 (365)
Q Consensus       183 ~~~k~~G~~~~~~~~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~kl~~~~~A~~~~~~aL~~  262 (365)
                      ..+.+.||.+.-.|+|..|+++|++++.+...-.     +      ..+-....+.||..|.-+++|++||.+..+-|.+
T Consensus       236 RA~sNlgN~hiflg~fe~A~ehYK~tl~LAielg-----~------r~vEAQscYSLgNtytll~e~~kAI~Yh~rHLaI  304 (639)
T KOG1130|consen  236 RAHSNLGNCHIFLGNFELAIEHYKLTLNLAIELG-----N------RTVEAQSCYSLGNTYTLLKEVQKAITYHQRHLAI  304 (639)
T ss_pred             HhhcccchhhhhhcccHhHHHHHHHHHHHHHHhc-----c------hhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHH
Confidence            4567899999999999999999999887653210     0      1112334788999999999999999999987755


Q ss_pred             CC------CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Q 017811          263 DE------NNVKALFRRGKARAELGQTDAAREDFLKAGKF  296 (365)
Q Consensus       263 ~p------~n~ka~~~~g~a~~~l~~~~~A~~~l~~al~l  296 (365)
                      ..      .-..|+|.+|.+|-.+|+.+.|+....+.+++
T Consensus       305 AqeL~DriGe~RacwSLgna~~alg~h~kAl~fae~hl~~  344 (639)
T KOG1130|consen  305 AQELEDRIGELRACWSLGNAFNALGEHRKALYFAELHLRS  344 (639)
T ss_pred             HHHHHHhhhhHHHHHHHHHHHHhhhhHHHHHHHHHHHHHH
Confidence            32      35679999999999999999999988888776

>KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport]

Probab=97.41  E-value=0.0033  Score=61.96  Aligned_cols=118  Identities=20%  Similarity=0.192  Sum_probs=86.5

Q ss_pred             HhhhhhhhhhhhhhHHHHHHHHHHHHHhhccchhhhhhhhHHHHH-------H-------HhhchhhhHHHHHHHHhcCH
Q 017811          184 RRKMDGNALFKEEKLEEAMQQYEMAIAYMGDDFMFQLFGKYRDMA-------L-------AVKNPCHLNMAACLLKLKRY  249 (365)
Q Consensus       184 ~~k~~G~~~~~~~~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~-------~-------~~~~~~~~nla~~~~kl~~~  249 (365)
                      .+.-+|..+++.++|++|+..|+..++...++.+......-....       .       +--..+++|.|..++..|+|
T Consensus       112 ll~L~AQvlYrl~~ydealdiY~~L~kn~~dd~d~~~r~nl~a~~a~l~~~~~q~v~~v~e~syel~yN~Ac~~i~~gky  191 (652)
T KOG2376|consen  112 LLELRAQVLYRLERYDEALDIYQHLAKNNSDDQDEERRANLLAVAAALQVQLLQSVPEVPEDSYELLYNTACILIENGKY  191 (652)
T ss_pred             HHHHHHHHHHHHhhHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHhhhHHHHHhccCCCcchHHHHHHHHHHHHhcccH
Confidence            455688999999999999999999988776654422211100000       0       00124689999999999999


Q ss_pred             HHHHHHHHHHHhC-------CCCC--------HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCcH
Q 017811          250 EEAIGQCSLVLGE-------DENN--------VKALFRRGKARAELGQTDAAREDFLKAGKFAPEDK  301 (365)
Q Consensus       250 ~~A~~~~~~aL~~-------~p~n--------~ka~~~~g~a~~~l~~~~~A~~~l~~al~l~P~n~  301 (365)
                      .+|++.+.+++.+       +..+        .-....++.++..+|+-.+|.+.|...++.+|-|.
T Consensus       192 ~qA~elL~kA~~~~~e~l~~~d~~eEeie~el~~IrvQlayVlQ~~Gqt~ea~~iy~~~i~~~~~D~  258 (652)
T KOG2376|consen  192 NQAIELLEKALRICREKLEDEDTNEEEIEEELNPIRVQLAYVLQLQGQTAEASSIYVDIIKRNPADE  258 (652)
T ss_pred             HHHHHHHHHHHHHHHHhhcccccchhhHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHhcCCCc
Confidence            9999999988432       2222        12566789999999999999999999999988764

>PF14853 Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repeat; PDB: 1IYG_A 1PC2_A 1NZN_A 3UUX_C 1Y8M_A 2PQR_A 2PQN_A 3O48_A

Probab=97.37  E-value=0.00051  Score=46.27  Aligned_cols=41  Identities=27%  Similarity=0.339  Sum_probs=34.5

Q ss_pred             hhhHHHHHHHHhcCHHHHHHHHHHHHhCCCCCHHHHHHHHH
Q 017811          235 CHLNMAACLLKLKRYEEAIGQCSLVLGEDENNVKALFRRGK  275 (365)
Q Consensus       235 ~~~nla~~~~kl~~~~~A~~~~~~aL~~~p~n~ka~~~~g~  275 (365)
                      +++.+|..++++|+|.+|..+++.+|+++|+|..|.--...
T Consensus         3 ~lY~lAig~ykl~~Y~~A~~~~~~lL~~eP~N~Qa~~L~~~   43 (53)
T PF14853_consen    3 CLYYLAIGHYKLGEYEKARRYCDALLEIEPDNRQAQSLKEL   43 (53)
T ss_dssp             HHHHHHHHHHHTT-HHHHHHHHHHHHHHTTS-HHHHHHHHH
T ss_pred             hHHHHHHHHHHhhhHHHHHHHHHHHHhhCCCcHHHHHHHHH
Confidence            58899999999999999999999999999999987654443

>COG2976 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=97.31  E-value=0.0047  Score=52.93  Aligned_cols=100  Identities=20%  Similarity=0.158  Sum_probs=79.1

Q ss_pred             HhhhhhhhhhhhhhHHHHHHHHHHHHHhhccchhhhhhhhHHHHHHHhhchhhhHHHHHHHHhcCHHHHHHHHHHHHhCC
Q 017811          184 RRKMDGNALFKEEKLEEAMQQYEMAIAYMGDDFMFQLFGKYRDMALAVKNPCHLNMAACLLKLKRYEEAIGQCSLVLGED  263 (365)
Q Consensus       184 ~~k~~G~~~~~~~~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~kl~~~~~A~~~~~~aL~~~  263 (365)
                      .....+..++..++++.|+...+.++..-.+              ..+..-+-.+||.+++.+|.+++|+...+..-.  
T Consensus        91 aaL~lAk~~ve~~~~d~A~aqL~~~l~~t~D--------------e~lk~l~~lRLArvq~q~~k~D~AL~~L~t~~~--  154 (207)
T COG2976          91 AALELAKAEVEANNLDKAEAQLKQALAQTKD--------------ENLKALAALRLARVQLQQKKADAALKTLDTIKE--  154 (207)
T ss_pred             HHHHHHHHHHhhccHHHHHHHHHHHHccchh--------------HHHHHHHHHHHHHHHHHhhhHHHHHHHHhcccc--
Confidence            3446777889999999999999999865433              223445678999999999999999887665433  


Q ss_pred             CCCHH--HHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCc
Q 017811          264 ENNVK--ALFRRGKARAELGQTDAAREDFLKAGKFAPED  300 (365)
Q Consensus       264 p~n~k--a~~~~g~a~~~l~~~~~A~~~l~~al~l~P~n  300 (365)
                       .+..  ..-.+|.++..+|+-++|+..|.+++..++++
T Consensus       155 -~~w~~~~~elrGDill~kg~k~~Ar~ay~kAl~~~~s~  192 (207)
T COG2976         155 -ESWAAIVAELRGDILLAKGDKQEARAAYEKALESDASP  192 (207)
T ss_pred             -ccHHHHHHHHhhhHHHHcCchHHHHHHHHHHHHccCCh
Confidence             3333  36689999999999999999999999998553

>PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A

Probab=97.31  E-value=0.00025  Score=42.85  Aligned_cols=32  Identities=25%  Similarity=0.297  Sum_probs=29.6

Q ss_pred             hhhHHHHHHHHhcCHHHHHHHHHHHHhCCCCC
Q 017811          235 CHLNMAACLLKLKRYEEAIGQCSLVLGEDENN  266 (365)
Q Consensus       235 ~~~nla~~~~kl~~~~~A~~~~~~aL~~~p~n  266 (365)
                      +|+++|.+|..+|++++|+.+++++++++|+|
T Consensus         3 ~~~~lg~~y~~~~~~~~A~~~~~~a~~~~~~n   34 (34)
T PF13181_consen    3 AYYNLGKIYEQLGDYEEALEYFEKALELNPDN   34 (34)
T ss_dssp             HHHHHHHHHHHTTSHHHHHHHHHHHHHHHTT-
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC
Confidence            58999999999999999999999999999964

...

>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]

Probab=97.30  E-value=0.012  Score=53.78  Aligned_cols=111  Identities=23%  Similarity=0.235  Sum_probs=85.7

Q ss_pred             hhhhhhhhhhhhhHHHHHHHHHHHHHhhccchhhhhhhhHHHHHHHhhchhhhHHHHHHHHhcCHHHHHHHHHH------
Q 017811          185 RKMDGNALFKEEKLEEAMQQYEMAIAYMGDDFMFQLFGKYRDMALAVKNPCHLNMAACLLKLKRYEEAIGQCSL------  258 (365)
Q Consensus       185 ~k~~G~~~~~~~~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~kl~~~~~A~~~~~~------  258 (365)
                      ...++..+...+++..|...+..++...|.+..                 +.+-+|.||+..|+.+.|...+..      
T Consensus       137 ~~~~~~~~~~~e~~~~a~~~~~~al~~~~~~~~-----------------~~~~la~~~l~~g~~e~A~~iL~~lP~~~~  199 (304)
T COG3118         137 ALAEAKELIEAEDFGEAAPLLKQALQAAPENSE-----------------AKLLLAECLLAAGDVEAAQAILAALPLQAQ  199 (304)
T ss_pred             HHHHhhhhhhccchhhHHHHHHHHHHhCcccch-----------------HHHHHHHHHHHcCChHHHHHHHHhCcccch
Confidence            456788899999999999999999999988633                 477888888888888666554432      


Q ss_pred             ----------------------------HHhCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC--cHHHHHHHH
Q 017811          259 ----------------------------VLGEDENNVKALFRRGKARAELGQTDAAREDFLKAGKFAPE--DKSIARELR  308 (365)
Q Consensus       259 ----------------------------aL~~~p~n~ka~~~~g~a~~~l~~~~~A~~~l~~al~l~P~--n~~~~~~l~  308 (365)
                                                  .+..||++..+-+.+|..+...|++++|++.|-..++.+-.  |..+++.|-
T Consensus       200 ~~~~~~l~a~i~ll~qaa~~~~~~~l~~~~aadPdd~~aa~~lA~~~~~~g~~e~Ale~Ll~~l~~d~~~~d~~~Rk~ll  279 (304)
T COG3118         200 DKAAHGLQAQIELLEQAAATPEIQDLQRRLAADPDDVEAALALADQLHLVGRNEAALEHLLALLRRDRGFEDGEARKTLL  279 (304)
T ss_pred             hhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcccccCcHHHHHHH
Confidence                                        23447889999999999999999999999888888877653  455666555


Q ss_pred             HHHH
Q 017811          309 LLAE  312 (365)
Q Consensus       309 ~l~~  312 (365)
                      .+..
T Consensus       280 e~f~  283 (304)
T COG3118         280 ELFE  283 (304)
T ss_pred             HHHH
Confidence            5444

>KOG3785 consensus Uncharacterized conserved protein [Function unknown]

Probab=97.21  E-value=0.0026  Score=59.10  Aligned_cols=137  Identities=15%  Similarity=0.126  Sum_probs=83.0

Q ss_pred             hhhhhhhhhhhhHHHHHHHHHHHHHhhccchhhhhhhhHHHHHHHhhchhhhHHHHHHHHhcCHHHHHHHHHHHH-----
Q 017811          186 KMDGNALFKEEKLEEAMQQYEMAIAYMGDDFMFQLFGKYRDMALAVKNPCHLNMAACLLKLKRYEEAIGQCSLVL-----  260 (365)
Q Consensus       186 k~~G~~~~~~~~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~kl~~~~~A~~~~~~aL-----  260 (365)
                      .-.|..+|..|+|++|+..|+-+.+....+                 ..+..|||.|++-+|.|.+|.....++-     
T Consensus        61 lWia~C~fhLgdY~~Al~~Y~~~~~~~~~~-----------------~el~vnLAcc~FyLg~Y~eA~~~~~ka~k~pL~  123 (557)
T KOG3785|consen   61 LWIAHCYFHLGDYEEALNVYTFLMNKDDAP-----------------AELGVNLACCKFYLGQYIEAKSIAEKAPKTPLC  123 (557)
T ss_pred             HHHHHHHHhhccHHHHHHHHHHHhccCCCC-----------------cccchhHHHHHHHHHHHHHHHHHHhhCCCChHH
Confidence            346889999999999999999887743332                 2346777777777777777766544331     


Q ss_pred             ---------hCCC------------CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHHHHHHH
Q 017811          261 ---------GEDE------------NNVKALFRRGKARAELGQTDAAREDFLKAGKFAPEDKSIARELRLLAEHEKAVYK  319 (365)
Q Consensus       261 ---------~~~p------------~n~ka~~~~g~a~~~l~~~~~A~~~l~~al~l~P~n~~~~~~l~~l~~~~~~~~~  319 (365)
                               +++.            +...-...+|.+++..-.|.+|+..|+++|.-+|+-..+...++.|.-++.-+. 
T Consensus       124 ~RLlfhlahklndEk~~~~fh~~LqD~~EdqLSLAsvhYmR~HYQeAIdvYkrvL~dn~ey~alNVy~ALCyyKlDYyd-  202 (557)
T KOG3785|consen  124 IRLLFHLAHKLNDEKRILTFHSSLQDTLEDQLSLASVHYMRMHYQEAIDVYKRVLQDNPEYIALNVYMALCYYKLDYYD-  202 (557)
T ss_pred             HHHHHHHHHHhCcHHHHHHHHHHHhhhHHHHHhHHHHHHHHHHHHHHHHHHHHHHhcChhhhhhHHHHHHHHHhcchhh-
Confidence                     1110            111223345556666666777777777777777776666666666655443222 


Q ss_pred             HHHHHHhcccCCCCCccccch
Q 017811          320 KQKEIYKGIFGPRPEPKQKKN  340 (365)
Q Consensus       320 ~~k~~y~kmf~~~~~~~~~~~  340 (365)
                      -........+.+-|+++-...
T Consensus       203 vsqevl~vYL~q~pdStiA~N  223 (557)
T KOG3785|consen  203 VSQEVLKVYLRQFPDSTIAKN  223 (557)
T ss_pred             hHHHHHHHHHHhCCCcHHHHH
Confidence            223334444555565555544

>KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport]

Probab=97.19  E-value=0.0072  Score=59.63  Aligned_cols=117  Identities=22%  Similarity=0.214  Sum_probs=88.4

Q ss_pred             HHhhhhhhhhhhhhhHHHHHHHHHHHHHhhccchhhhh--------hhhHHHHHHHh-------hchh-hhHHHHHHHHh
Q 017811          183 DRRKMDGNALFKEEKLEEAMQQYEMAIAYMGDDFMFQL--------FGKYRDMALAV-------KNPC-HLNMAACLLKL  246 (365)
Q Consensus       183 ~~~k~~G~~~~~~~~y~~A~~~y~~al~~~~~~~~~~~--------~~~~~~~~~~~-------~~~~-~~nla~~~~kl  246 (365)
                      ..+...-|.+...++|++|.....+.+...|++...-.        .+...+.+..+       .... .+-.|.|++++
T Consensus        13 ~~l~t~ln~~~~~~e~e~a~k~~~Kil~~~pdd~~a~~cKvValIq~~ky~~ALk~ikk~~~~~~~~~~~fEKAYc~Yrl   92 (652)
T KOG2376|consen   13 EALLTDLNRHGKNGEYEEAVKTANKILSIVPDDEDAIRCKVVALIQLDKYEDALKLIKKNGALLVINSFFFEKAYCEYRL   92 (652)
T ss_pred             HHHHHHHHHhccchHHHHHHHHHHHHHhcCCCcHhhHhhhHhhhhhhhHHHHHHHHHHhcchhhhcchhhHHHHHHHHHc
Confidence            45566667788899999999999999999887654211        11222222111       1112 26889999999


Q ss_pred             cCHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCcHH
Q 017811          247 KRYEEAIGQCSLVLGEDENNVKALFRRGKARAELGQTDAAREDFLKAGKFAPEDKS  302 (365)
Q Consensus       247 ~~~~~A~~~~~~aL~~~p~n~ka~~~~g~a~~~l~~~~~A~~~l~~al~l~P~n~~  302 (365)
                      ++.++|+.+++   .+++...+.+.-+|+.++.+++|++|+..|+..++-+-++-+
T Consensus        93 nk~Dealk~~~---~~~~~~~~ll~L~AQvlYrl~~ydealdiY~~L~kn~~dd~d  145 (652)
T KOG2376|consen   93 NKLDEALKTLK---GLDRLDDKLLELRAQVLYRLERYDEALDIYQHLAKNNSDDQD  145 (652)
T ss_pred             ccHHHHHHHHh---cccccchHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCchHH
Confidence            99999999988   677788999999999999999999999999999887665443

>KOG0549 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]

Probab=97.18  E-value=0.00038  Score=58.52  Aligned_cols=40  Identities=25%  Similarity=0.463  Sum_probs=36.1

Q ss_pred             eecCCCCchhhhHHHHHhcCCcCcEEEEEeccccccCCCCC
Q 017811          100 MVLGKEKKEMTGLAIGVSSMKAGEHALLHVGWELGYGKEGS  140 (365)
Q Consensus       100 f~lg~~~~~i~g~e~~l~~Mk~GE~~~~~i~~~~~yg~~g~  140 (365)
                      |.+|.+ .||+|++.+|.+|+.||+..+++||+++||..+.
T Consensus         1 ~~~g~~-~vi~gm~~~~~g~c~ge~rkvv~pp~l~fg~~~~   40 (188)
T KOG0549|consen    1 FTLGQG-FVIPGMDQALEGMCNGEKRKVVIPPHLGFGEGGR   40 (188)
T ss_pred             Ccccce-EEecCHHHHhhhhhccccceeccCCccccccccc
Confidence            467888 7999999999999999999999999999996543

>KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures]

Probab=97.16  E-value=0.0026  Score=59.35  Aligned_cols=139  Identities=23%  Similarity=0.319  Sum_probs=101.9

Q ss_pred             HHHHhhhhhhhhhhhhhHHHHHHHHHHHHHhhccchh-h----------hhhhhHHHH---------------HHHhhch
Q 017811          181 AADRRKMDGNALFKEEKLEEAMQQYEMAIAYMGDDFM-F----------QLFGKYRDM---------------ALAVKNP  234 (365)
Q Consensus       181 ~a~~~k~~G~~~~~~~~y~~A~~~y~~al~~~~~~~~-~----------~~~~~~~~~---------------~~~~~~~  234 (365)
                      .+......|..++...++.+|+..+.+.|..+.+-.. |          ...+...++               -..+...
T Consensus         5 q~k~q~~~g~~Ly~s~~~~~al~~w~~~L~~l~~~~~Rf~~lG~l~~a~s~~g~y~~mL~~a~sqi~~a~~~~ds~~~~e   84 (518)
T KOG1941|consen    5 QTKKQIEKGLQLYQSNQTEKALQVWTKVLEKLSDLMGRFRVLGCLVTAHSEMGRYKEMLKFAVSQIDTARELEDSDFLLE   84 (518)
T ss_pred             hhHHHHHHHHhHhcCchHHHHHHHHHHHHHHHHHHHHHHHHhccchhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            4556778899999999999999999999887654211 0          001111111               1234456


Q ss_pred             hhhHHHHHHHHhcCHHHHHHHHHHHHhCCCCCH-----HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCcHH------H
Q 017811          235 CHLNMAACLLKLKRYEEAIGQCSLVLGEDENNV-----KALFRRGKARAELGQTDAAREDFLKAGKFAPEDKS------I  303 (365)
Q Consensus       235 ~~~nla~~~~kl~~~~~A~~~~~~aL~~~p~n~-----ka~~~~g~a~~~l~~~~~A~~~l~~al~l~P~n~~------~  303 (365)
                      +|.|++..+-++.+|.+++.+++..+.+....+     .++..+|.|+..++.|+.+++.|++|+++.-++.+      +
T Consensus        85 a~lnlar~~e~l~~f~kt~~y~k~~l~lpgt~~~~~~gq~~l~~~~Ahlgls~fq~~Lesfe~A~~~A~~~~D~~LElqv  164 (518)
T KOG1941|consen   85 AYLNLARSNEKLCEFHKTISYCKTCLGLPGTRAGQLGGQVSLSMGNAHLGLSVFQKALESFEKALRYAHNNDDAMLELQV  164 (518)
T ss_pred             HHHHHHHHHHHHHHhhhHHHHHHHHhcCCCCCcccccchhhhhHHHHhhhHHHHHHHHHHHHHHHHHhhccCCceeeeeh
Confidence            799999999999999999999999998764443     68888999999999999999999999998766543      3


Q ss_pred             HHHHHHHHHHHHHHHH
Q 017811          304 ARELRLLAEHEKAVYK  319 (365)
Q Consensus       304 ~~~l~~l~~~~~~~~~  319 (365)
                      --.|..+..+++++.+
T Consensus       165 cv~Lgslf~~l~D~~K  180 (518)
T KOG1941|consen  165 CVSLGSLFAQLKDYEK  180 (518)
T ss_pred             hhhHHHHHHHHHhhhH
Confidence            3345555556665543

>KOG3364 consensus Membrane protein involved in organellar division [Cell wall/membrane/envelope biogenesis]

Probab=97.16  E-value=0.0031  Score=50.67  Aligned_cols=80  Identities=11%  Similarity=0.109  Sum_probs=66.2

Q ss_pred             chhhhHHHHHHHHhcC---HHHHHHHHHHHHh-CCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCcHHHHHHH
Q 017811          233 NPCHLNMAACLLKLKR---YEEAIGQCSLVLG-EDEN-NVKALFRRGKARAELGQTDAAREDFLKAGKFAPEDKSIAREL  307 (365)
Q Consensus       233 ~~~~~nla~~~~kl~~---~~~A~~~~~~aL~-~~p~-n~ka~~~~g~a~~~l~~~~~A~~~l~~al~l~P~n~~~~~~l  307 (365)
                      ..+.+|+|.|+.+..+   ..+.+..++..++ -.|. .-..+|.+|..++.+++|+.|+.+....|+.+|+|..+...-
T Consensus        32 ~~s~f~lAwaLV~S~~~~dv~~GI~iLe~l~~~~~~~~rRe~lyYLAvg~yRlkeY~~s~~yvd~ll~~e~~n~Qa~~Lk  111 (149)
T KOG3364|consen   32 KQSQFNLAWALVRSRDTEDVQEGIVILEDLLKSAHPERRRECLYYLAVGHYRLKEYSKSLRYVDALLETEPNNRQALELK  111 (149)
T ss_pred             HHHHHHHHHHHHcccchHHHHHhHHHHHHHhhhcCcccchhhhhhhHHHHHHHhhHHHHHHHHHHHHhhCCCcHHHHHHH
Confidence            4568999999998764   5677888888886 4443 456999999999999999999999999999999999888766


Q ss_pred             HHHHH
Q 017811          308 RLLAE  312 (365)
Q Consensus       308 ~~l~~  312 (365)
                      ..+..
T Consensus       112 ~~ied  116 (149)
T KOG3364|consen  112 ETIED  116 (149)
T ss_pred             HHHHH
Confidence            66543

>COG0457 NrfG FOG: TPR repeat [General function prediction only]

Probab=97.14  E-value=0.017  Score=49.02  Aligned_cols=133  Identities=28%  Similarity=0.245  Sum_probs=74.4

Q ss_pred             HHhhhhhhhhhhhhhHHHHHHHHHHHHHhhccchhhhhhhhHHHHHHHhhchhhhHHHH-HHHHhcCHHHHHHHHHHHHh
Q 017811          183 DRRKMDGNALFKEEKLEEAMQQYEMAIAYMGDDFMFQLFGKYRDMALAVKNPCHLNMAA-CLLKLKRYEEAIGQCSLVLG  261 (365)
Q Consensus       183 ~~~k~~G~~~~~~~~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~-~~~kl~~~~~A~~~~~~aL~  261 (365)
                      ..+...|..+...+.|..|+..+..++...+....                 .....+. ++...++++.|+..+.+++.
T Consensus        96 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----------------~~~~~~~~~~~~~~~~~~a~~~~~~~~~  158 (291)
T COG0457          96 EALLNLGLLLEALGKYEEALELLEKALALDPDPDL-----------------AEALLALGALYELGDYEEALELYEKALE  158 (291)
T ss_pred             HHHHHHHHHHHHHhhHHHHHHHHHHHHcCCCCcch-----------------HHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence            34445556666666666666666666665544311                 1222222 66677777777777777766


Q ss_pred             CCC---CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC-cHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCC
Q 017811          262 EDE---NNVKALFRRGKARAELGQTDAAREDFLKAGKFAPE-DKSIARELRLLAEHEKAVYKKQKEIYKGIFGPRP  333 (365)
Q Consensus       262 ~~p---~n~ka~~~~g~a~~~l~~~~~A~~~l~~al~l~P~-n~~~~~~l~~l~~~~~~~~~~~k~~y~kmf~~~~  333 (365)
                      .+|   .....++.++..+...++++.|+..+.+++...|. .......+..+....... ......+...+...+
T Consensus       159 ~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~a~~~~~~~~~~~~  233 (291)
T COG0457         159 LDPELNELAEALLALGALLEALGRYEEALELLEKALKLNPDDDAEALLNLGLLYLKLGKY-EEALEYYEKALELDP  233 (291)
T ss_pred             cCCCccchHHHHHHhhhHHHHhcCHHHHHHHHHHHHhhCcccchHHHHHhhHHHHHcccH-HHHHHHHHHHHhhCc
Confidence            665   34555666666666667777777777777777666 455555555444333322 223333444444444

>PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins

Probab=97.12  E-value=0.0024  Score=54.10  Aligned_cols=89  Identities=19%  Similarity=0.208  Sum_probs=66.5

Q ss_pred             HHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHcCCH----------HHHHHHHHHHHhhCCCcHHHHHHHHHHHHHHH---
Q 017811          249 YEEAIGQCSLVLGEDENNVKALFRRGKARAELGQT----------DAAREDFLKAGKFAPEDKSIARELRLLAEHEK---  315 (365)
Q Consensus       249 ~~~A~~~~~~aL~~~p~n~ka~~~~g~a~~~l~~~----------~~A~~~l~~al~l~P~n~~~~~~l~~l~~~~~---  315 (365)
                      |+.|...+......+|.++.+++|-|.+++.+.++          ++|+.-|+.||.++|+..++...++.....+.   
T Consensus         7 FE~ark~aea~y~~nP~DadnL~~WG~ALLELAqfk~g~es~~miedAisK~eeAL~I~P~~hdAlw~lGnA~ts~A~l~   86 (186)
T PF06552_consen    7 FEHARKKAEAAYAKNPLDADNLTNWGGALLELAQFKQGPESKKMIEDAISKFEEALKINPNKHDALWCLGNAYTSLAFLT   86 (186)
T ss_dssp             HHHHHHHHHHHHHH-TT-HHHHHHHHHHHHHHHHHS-HHHHHHHHHHHHHHHHHHHHH-TT-HHHHHHHHHHHHHHHHH-
T ss_pred             HHHHHHHHHHHHHhCcHhHHHHHHHHHHHHHHHhccCcchHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHhhc
Confidence            78899999999999999999999999999998664          77999999999999999888888777655333   


Q ss_pred             -------HHHHHHHHHHhcccCCCCCccc
Q 017811          316 -------AVYKKQKEIYKGIFGPRPEPKQ  337 (365)
Q Consensus       316 -------~~~~~~k~~y~kmf~~~~~~~~  337 (365)
                             .+-++....|.+....+|.+.-
T Consensus        87 ~d~~~A~~~F~kA~~~FqkAv~~~P~ne~  115 (186)
T PF06552_consen   87 PDTAEAEEYFEKATEYFQKAVDEDPNNEL  115 (186)
T ss_dssp             --HHHHHHHHHHHHHHHHHHHHH-TT-HH
T ss_pred             CChHHHHHHHHHHHHHHHHHHhcCCCcHH
Confidence                   3344556667777777776543

Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A.

>KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=97.10  E-value=0.0093  Score=53.52  Aligned_cols=133  Identities=13%  Similarity=0.114  Sum_probs=89.1

Q ss_pred             hhhhhhhhhhhHHHHHHHHHHHHHhhcc--chhhh----hhhhHHHHHHHhh----chhhhHHHHHHHHh----cCHHHH
Q 017811          187 MDGNALFKEEKLEEAMQQYEMAIAYMGD--DFMFQ----LFGKYRDMALAVK----NPCHLNMAACLLKL----KRYEEA  252 (365)
Q Consensus       187 ~~G~~~~~~~~y~~A~~~y~~al~~~~~--~~~~~----~~~~~~~~~~~~~----~~~~~nla~~~~kl----~~~~~A  252 (365)
                      .-|..+...++|++|++.......+.-.  +....    ..+-....+..+.    -..+..||.++.++    +++..|
T Consensus       113 ~aa~i~~~~~~~deAl~~~~~~~~lE~~Al~VqI~lk~~r~d~A~~~lk~mq~ided~tLtQLA~awv~la~ggek~qdA  192 (299)
T KOG3081|consen  113 LAAIIYMHDGDFDEALKALHLGENLEAAALNVQILLKMHRFDLAEKELKKMQQIDEDATLTQLAQAWVKLATGGEKIQDA  192 (299)
T ss_pred             HhhHHhhcCCChHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHccchHHHHHHHHHHHHHHhccchhhhhH
Confidence            3566777888888888877663222110  00000    0000011111111    12355577777775    368888


Q ss_pred             HHHHHHHHhCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHHHHHHH
Q 017811          253 IGQCSLVLGEDENNVKALFRRGKARAELGQTDAAREDFLKAGKFAPEDKSIARELRLLAEHEKAVYK  319 (365)
Q Consensus       253 ~~~~~~aL~~~p~n~ka~~~~g~a~~~l~~~~~A~~~l~~al~l~P~n~~~~~~l~~l~~~~~~~~~  319 (365)
                      .-.|...-+..|.++..+.-.+.|++.+++|++|...++.+|..++++++....+-.+....+.-.+
T Consensus       193 fyifeE~s~k~~~T~~llnG~Av~~l~~~~~eeAe~lL~eaL~kd~~dpetL~Nliv~a~~~Gkd~~  259 (299)
T KOG3081|consen  193 FYIFEELSEKTPPTPLLLNGQAVCHLQLGRYEEAESLLEEALDKDAKDPETLANLIVLALHLGKDAE  259 (299)
T ss_pred             HHHHHHHhcccCCChHHHccHHHHHHHhcCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHhCCChH
Confidence            8888888887777999999999999999999999999999999999999988888777665555433

>PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A

Probab=97.06  E-value=0.001  Score=39.67  Aligned_cols=31  Identities=35%  Similarity=0.437  Sum_probs=19.8

Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC
Q 017811          269 ALFRRGKARAELGQTDAAREDFLKAGKFAPE  299 (365)
Q Consensus       269 a~~~~g~a~~~l~~~~~A~~~l~~al~l~P~  299 (365)
                      |+|++|.++..+|++++|+..|++++...|+
T Consensus         2 a~~~~a~~~~~~g~~~~A~~~~~~~~~~~P~   32 (33)
T PF13174_consen    2 ALYRLARCYYKLGDYDEAIEYFQRLIKRYPD   32 (33)
T ss_dssp             HHHHHHHHHHHHCHHHHHHHHHHHHHHHSTT
T ss_pred             HHHHHHHHHHHccCHHHHHHHHHHHHHHCcC
Confidence            5666666666666666666666666666664

>COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism]

Probab=97.05  E-value=0.023  Score=53.62  Aligned_cols=128  Identities=12%  Similarity=-0.027  Sum_probs=95.8

Q ss_pred             HHHHHHHHHHhhhhhhhhhhhhhHHHHHHHHHHHHHhhccchhhhhhhhHHHHHHHhhchhhhHHHHHHHHhcCHHHHHH
Q 017811          175 VEERIGAADRRKMDGNALFKEEKLEEAMQQYEMAIAYMGDDFMFQLFGKYRDMALAVKNPCHLNMAACLLKLKRYEEAIG  254 (365)
Q Consensus       175 ~~e~~~~a~~~k~~G~~~~~~~~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~kl~~~~~A~~  254 (365)
                      ...+...|...-..|-..+..|+|.+|.+.-.++-+.-+..                 ..+|.--|.+-..+|+++.|=.
T Consensus        77 ~~rKrrra~~~~~egl~~l~eG~~~qAEkl~~rnae~~e~p-----------------~l~~l~aA~AA~qrgd~~~an~  139 (400)
T COG3071          77 SRRKRRRARKALNEGLLKLFEGDFQQAEKLLRRNAEHGEQP-----------------VLAYLLAAEAAQQRGDEDRANR  139 (400)
T ss_pred             HHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHhhhcCcch-----------------HHHHHHHHHHHHhcccHHHHHH
Confidence            34567788888899999999999999999999877665442                 2235566677777888888888


Q ss_pred             HHHHHHhCCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHHHHHHH
Q 017811          255 QCSLVLGEDE-NNVKALFRRGKARAELGQTDAAREDFLKAGKFAPEDKSIARELRLLAEHEKAVYK  319 (365)
Q Consensus       255 ~~~~aL~~~p-~n~ka~~~~g~a~~~l~~~~~A~~~l~~al~l~P~n~~~~~~l~~l~~~~~~~~~  319 (365)
                      +..++-+..+ ++.-++..++..+...++++.|...+..+++..|.++.+......++.+.+++..
T Consensus       140 yL~eaae~~~~~~l~v~ltrarlll~~~d~~aA~~~v~~ll~~~pr~~~vlrLa~r~y~~~g~~~~  205 (400)
T COG3071         140 YLAEAAELAGDDTLAVELTRARLLLNRRDYPAARENVDQLLEMTPRHPEVLRLALRAYIRLGAWQA  205 (400)
T ss_pred             HHHHHhccCCCchHHHHHHHHHHHHhCCCchhHHHHHHHHHHhCcCChHHHHHHHHHHHHhccHHH
Confidence            8888777733 3556677788888888888888888888888888888777777777666666544

>KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton]

Probab=97.04  E-value=0.033  Score=57.57  Aligned_cols=114  Identities=18%  Similarity=0.206  Sum_probs=90.2

Q ss_pred             hhhhhhhHHHHHHHHHHHHHhhccchhhhhhhhHHHHHHHhhchhhhHHHHHHHHhcCHHHHHHHHHHHHhCCCCCHHHH
Q 017811          191 ALFKEEKLEEAMQQYEMAIAYMGDDFMFQLFGKYRDMALAVKNPCHLNMAACLLKLKRYEEAIGQCSLVLGEDENNVKAL  270 (365)
Q Consensus       191 ~~~~~~~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~kl~~~~~A~~~~~~aL~~~p~n~ka~  270 (365)
                      .....++|..|+....+.++..|+...+                 ..--|..+.++|++++|....+..-...+++.-.+
T Consensus        18 d~ld~~qfkkal~~~~kllkk~Pn~~~a-----------------~vLkaLsl~r~gk~~ea~~~Le~~~~~~~~D~~tL   80 (932)
T KOG2053|consen   18 DLLDSSQFKKALAKLGKLLKKHPNALYA-----------------KVLKALSLFRLGKGDEALKLLEALYGLKGTDDLTL   80 (932)
T ss_pred             HHhhhHHHHHHHHHHHHHHHHCCCcHHH-----------------HHHHHHHHHHhcCchhHHHHHhhhccCCCCchHHH
Confidence            3456788999999999999999875322                 44557899999999999955555555667788888


Q ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHHHHHHHHHH
Q 017811          271 FRRGKARAELGQTDAAREDFLKAGKFAPEDKSIARELRLLAEHEKAVYKKQK  322 (365)
Q Consensus       271 ~~~g~a~~~l~~~~~A~~~l~~al~l~P~n~~~~~~l~~l~~~~~~~~~~~k  322 (365)
                      --+-.+|..++++++|...|++++..+|+ .+....+=.++.+.+.+.+.++
T Consensus        81 q~l~~~y~d~~~~d~~~~~Ye~~~~~~P~-eell~~lFmayvR~~~yk~qQk  131 (932)
T KOG2053|consen   81 QFLQNVYRDLGKLDEAVHLYERANQKYPS-EELLYHLFMAYVREKSYKKQQK  131 (932)
T ss_pred             HHHHHHHHHHhhhhHHHHHHHHHHhhCCc-HHHHHHHHHHHHHHHHHHHHHH
Confidence            89999999999999999999999999999 6666666666666665554433

>COG0457 NrfG FOG: TPR repeat [General function prediction only]

Probab=96.98  E-value=0.017  Score=49.02  Aligned_cols=129  Identities=27%  Similarity=0.323  Sum_probs=94.2

Q ss_pred             hhhhhhhHHHHHHHHHHHHHhhccchhhhhhhhHHHHHHHhhchhhhHHHHHHHHhcCHHHHHHHHHHHHhCCCC-CHHH
Q 017811          191 ALFKEEKLEEAMQQYEMAIAYMGDDFMFQLFGKYRDMALAVKNPCHLNMAACLLKLKRYEEAIGQCSLVLGEDEN-NVKA  269 (365)
Q Consensus       191 ~~~~~~~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~kl~~~~~A~~~~~~aL~~~p~-n~ka  269 (365)
                      .++..+++..|+..|.+++...+....              ....+.+++..+...+++..|+..+..++...+. ...+
T Consensus       139 ~~~~~~~~~~a~~~~~~~~~~~~~~~~--------------~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~  204 (291)
T COG0457         139 ALYELGDYEEALELYEKALELDPELNE--------------LAEALLALGALLEALGRYEEALELLEKALKLNPDDDAEA  204 (291)
T ss_pred             HHHHcCCHHHHHHHHHHHHhcCCCccc--------------hHHHHHHhhhHHHHhcCHHHHHHHHHHHHhhCcccchHH
Confidence            788999999999999999885542000              1223556666688899999999999999999999 7999


Q ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCCC
Q 017811          270 LFRRGKARAELGQTDAAREDFLKAGKFAPEDKSIARELRLLAEHEKAVYKKQKEIYKGIFGPRPE  334 (365)
Q Consensus       270 ~~~~g~a~~~l~~~~~A~~~l~~al~l~P~n~~~~~~l~~l~~~~~~~~~~~k~~y~kmf~~~~~  334 (365)
                      ++.++.++...++++.|...+..++...|........+..... ...........+.+.+...+.
T Consensus       205 ~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~  268 (291)
T COG0457         205 LLNLGLLYLKLGKYEEALEYYEKALELDPDNAEALYNLALLLL-ELGRYEEALEALEKALELDPD  268 (291)
T ss_pred             HHHhhHHHHHcccHHHHHHHHHHHHhhCcccHHHHhhHHHHHH-HcCCHHHHHHHHHHHHHhCcc
Confidence            9999999999999999999999999999985444444444433 222223333334444444443

>KOG0376 consensus Serine-threonine phosphatase 2A, catalytic subunit [General function prediction only]

Probab=96.97  E-value=0.0016  Score=62.82  Aligned_cols=115  Identities=17%  Similarity=0.004  Sum_probs=85.4

Q ss_pred             hhHHHHHHHHhcCHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHHH
Q 017811          236 HLNMAACLLKLKRYEEAIGQCSLVLGEDENNVKALFRRGKARAELGQTDAAREDFLKAGKFAPEDKSIARELRLLAEHEK  315 (365)
Q Consensus       236 ~~nla~~~~kl~~~~~A~~~~~~aL~~~p~n~ka~~~~g~a~~~l~~~~~A~~~l~~al~l~P~n~~~~~~l~~l~~~~~  315 (365)
                      +-+-|.-.++-+.|+.|+..|.+||+++|+++-.+-.|+.++...++|..|+.++.+|++++|....+....+...-+..
T Consensus         7 ~k~ean~~l~~~~fd~avdlysKaI~ldpnca~~~anRa~a~lK~e~~~~Al~Da~kaie~dP~~~K~Y~rrg~a~m~l~   86 (476)
T KOG0376|consen    7 LKNEANEALKDKVFDVAVDLYSKAIELDPNCAIYFANRALAHLKVESFGGALHDALKAIELDPTYIKAYVRRGTAVMALG   86 (476)
T ss_pred             hhhHHhhhcccchHHHHHHHHHHHHhcCCcceeeechhhhhheeechhhhHHHHHHhhhhcCchhhheeeeccHHHHhHH
Confidence            45667788899999999999999999999999999999999999999999999999999999986544433333333444


Q ss_pred             HHHHHHHHHHhcccCCCCCccccchhHHHHHHHHHHHHHH
Q 017811          316 AVYKKQKEIYKGIFGPRPEPKQKKNWLIIFWQLLVSLVLG  355 (365)
Q Consensus       316 ~~~~~~k~~y~kmf~~~~~~~~~~~~~~~~~~~~~~~~~~  355 (365)
                      +..++.+. |.+.....|    ...+....+..|-.++..
T Consensus        87 ~~~~A~~~-l~~~~~l~P----nd~~~~r~~~Ec~~~vs~  121 (476)
T KOG0376|consen   87 EFKKALLD-LEKVKKLAP----NDPDATRKIDECNKIVSE  121 (476)
T ss_pred             HHHHHHHH-HHHhhhcCc----CcHHHHHHHHHHHHHHHH
Confidence            44433333 555444333    344455666777777766

>KOG2796 consensus Uncharacterized conserved protein [Function unknown]

Probab=96.90  E-value=0.0078  Score=53.93  Aligned_cols=117  Identities=18%  Similarity=0.093  Sum_probs=92.6

Q ss_pred             HhhhhhhhhhhhhhHHHHHHHHHHHHHhhcc-chhhhh--------------hhhHHH-------HHHH--hhchhhhHH
Q 017811          184 RRKMDGNALFKEEKLEEAMQQYEMAIAYMGD-DFMFQL--------------FGKYRD-------MALA--VKNPCHLNM  239 (365)
Q Consensus       184 ~~k~~G~~~~~~~~y~~A~~~y~~al~~~~~-~~~~~~--------------~~~~~~-------~~~~--~~~~~~~nl  239 (365)
                      -+.-..+.+.-.+.|.-.+..|.+.++.+|. ++....              .....+       .+..  ....++-|.
T Consensus       179 Vmy~~~~~llG~kEy~iS~d~~~~vi~~~~e~~p~L~s~Lgr~~MQ~GD~k~a~~yf~~vek~~~kL~~~q~~~~V~~n~  258 (366)
T KOG2796|consen  179 VMYSMANCLLGMKEYVLSVDAYHSVIKYYPEQEPQLLSGLGRISMQIGDIKTAEKYFQDVEKVTQKLDGLQGKIMVLMNS  258 (366)
T ss_pred             HHHHHHHHHhcchhhhhhHHHHHHHHHhCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhhhhccchhHHHHhhh
Confidence            4566788889999999999999999998853 221100              001111       1111  123467888


Q ss_pred             HHHHHHhcCHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCc
Q 017811          240 AACLLKLKRYEEAIGQCSLVLGEDENNVKALFRRGKARAELGQTDAAREDFLKAGKFAPED  300 (365)
Q Consensus       240 a~~~~kl~~~~~A~~~~~~aL~~~p~n~ka~~~~g~a~~~l~~~~~A~~~l~~al~l~P~n  300 (365)
                      +.+|+-.++|..|...+++++..||.++-+..+.|.|++.+|+..+|++.+..++...|..
T Consensus       259 a~i~lg~nn~a~a~r~~~~i~~~D~~~~~a~NnKALcllYlg~l~DAiK~~e~~~~~~P~~  319 (366)
T KOG2796|consen  259 AFLHLGQNNFAEAHRFFTEILRMDPRNAVANNNKALCLLYLGKLKDALKQLEAMVQQDPRH  319 (366)
T ss_pred             hhheecccchHHHHHHHhhccccCCCchhhhchHHHHHHHHHHHHHHHHHHHHHhccCCcc
Confidence            9999999999999999999999999999999999999999999999999999999999973

>PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A

Probab=96.90  E-value=0.0011  Score=39.48  Aligned_cols=32  Identities=25%  Similarity=0.415  Sum_probs=30.0

Q ss_pred             hhhHHHHHHHHhcCHHHHHHHHHHHHhCCCCC
Q 017811          235 CHLNMAACLLKLKRYEEAIGQCSLVLGEDENN  266 (365)
Q Consensus       235 ~~~nla~~~~kl~~~~~A~~~~~~aL~~~p~n  266 (365)
                      +++++|.||.++|++++|+..++++++..|++
T Consensus         2 a~~~~a~~~~~~g~~~~A~~~~~~~~~~~P~s   33 (33)
T PF13174_consen    2 ALYRLARCYYKLGDYDEAIEYFQRLIKRYPDS   33 (33)
T ss_dssp             HHHHHHHHHHHHCHHHHHHHHHHHHHHHSTTS
T ss_pred             HHHHHHHHHHHccCHHHHHHHHHHHHHHCcCC
Confidence            48899999999999999999999999999975

>smart00028 TPR Tetratricopeptide repeats

Probab=96.81  E-value=0.0019  Score=37.25  Aligned_cols=29  Identities=31%  Similarity=0.395  Sum_probs=14.8

Q ss_pred             hhHHHHHHHHhcCHHHHHHHHHHHHhCCC
Q 017811          236 HLNMAACLLKLKRYEEAIGQCSLVLGEDE  264 (365)
Q Consensus       236 ~~nla~~~~kl~~~~~A~~~~~~aL~~~p  264 (365)
                      ++++|.|+..+++++.|+..+..++.++|
T Consensus         4 ~~~~a~~~~~~~~~~~a~~~~~~~~~~~~   32 (34)
T smart00028        4 LYNLGNAYLKLGDYDEALEYYEKALELDP   32 (34)
T ss_pred             HHHHHHHHHHHhhHHHHHHHHHHHHccCC
Confidence            44555555555555555555555555444

Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.

>smart00028 TPR Tetratricopeptide repeats

Probab=96.80  E-value=0.0022  Score=36.90  Aligned_cols=33  Identities=36%  Similarity=0.518  Sum_probs=30.7

Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCc
Q 017811          268 KALFRRGKARAELGQTDAAREDFLKAGKFAPED  300 (365)
Q Consensus       268 ka~~~~g~a~~~l~~~~~A~~~l~~al~l~P~n  300 (365)
                      .+++++|.++..+++++.|...|+++++++|++
T Consensus         2 ~~~~~~a~~~~~~~~~~~a~~~~~~~~~~~~~~   34 (34)
T smart00028        2 EALYNLGNAYLKLGDYDEALEYYEKALELDPNN   34 (34)
T ss_pred             hHHHHHHHHHHHHhhHHHHHHHHHHHHccCCCC
Confidence            578999999999999999999999999999864

Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.

>KOG0551 consensus Hsp90 co-chaperone CNS1 (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]

Probab=96.78  E-value=0.019  Score=53.13  Aligned_cols=68  Identities=22%  Similarity=0.259  Sum_probs=60.1

Q ss_pred             HHHhhhhhhhhhhhhhHHHHHHHHHHHHHhhccchhhhhhhhHHHHHHHhhchhhhHHHHHHHHhcCHHHHHHHHHHHHh
Q 017811          182 ADRRKMDGNALFKEEKLEEAMQQYEMAIAYMGDDFMFQLFGKYRDMALAVKNPCHLNMAACLLKLKRYEEAIGQCSLVLG  261 (365)
Q Consensus       182 a~~~k~~G~~~~~~~~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~kl~~~~~A~~~~~~aL~  261 (365)
                      |..+.+++...+-.|+|..|+..+.+|+.+.|.+                 .++|+.=|.|++.++.+..|...|+..+.
T Consensus       119 avLY~NRAAa~~~l~NyRs~l~Dcs~al~~~P~h-----------------~Ka~~R~Akc~~eLe~~~~a~nw~ee~~~  181 (390)
T KOG0551|consen  119 AVLYTNRAAAQLYLGNYRSALNDCSAALKLKPTH-----------------LKAYIRGAKCLLELERFAEAVNWCEEGLQ  181 (390)
T ss_pred             HHHHhhHHHHHHHHHHHHHHHHHHHHHHhcCcch-----------------hhhhhhhhHHHHHHHHHHHHHHHHhhhhh
Confidence            4567788888889999999999999999999985                 56799999999999999999999999987


Q ss_pred             CCCCC
Q 017811          262 EDENN  266 (365)
Q Consensus       262 ~~p~n  266 (365)
                      ++-.+
T Consensus       182 ~d~e~  186 (390)
T KOG0551|consen  182 IDDEA  186 (390)
T ss_pred             hhHHH
Confidence            77543

>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A

Probab=96.76  E-value=0.0016  Score=40.11  Aligned_cols=24  Identities=21%  Similarity=0.162  Sum_probs=12.2

Q ss_pred             hhHHHHHHHHhcCHHHHHHHHHHH
Q 017811          236 HLNMAACLLKLKRYEEAIGQCSLV  259 (365)
Q Consensus       236 ~~nla~~~~kl~~~~~A~~~~~~a  259 (365)
                      |.+||.+|.++|+|++|+.+|+++
T Consensus         2 l~~Lg~~~~~~g~~~~Ai~~y~~a   25 (36)
T PF13176_consen    2 LNNLGRIYRQQGDYEKAIEYYEQA   25 (36)
T ss_dssp             HHHHHHHHHHCT-HHHHHHHHHHH
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHH
Confidence            445555555555555555555553

>KOG0545 consensus Aryl-hydrocarbon receptor-interacting protein [Posttranslational modification, protein turnover, chaperones]

Probab=96.72  E-value=0.017  Score=51.25  Aligned_cols=104  Identities=13%  Similarity=0.045  Sum_probs=80.4

Q ss_pred             chhhhHHHHHHHHhcCHHHHHHHHHHHHh--------CCCCC----------HHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 017811          233 NPCHLNMAACLLKLKRYEEAIGQCSLVLG--------EDENN----------VKALFRRGKARAELGQTDAAREDFLKAG  294 (365)
Q Consensus       233 ~~~~~nla~~~~kl~~~~~A~~~~~~aL~--------~~p~n----------~ka~~~~g~a~~~l~~~~~A~~~l~~al  294 (365)
                      +.++...|.-++++|+|.+|...|..|+.        ..|..          .-.+.++++|++..++|-++++.-..+|
T Consensus       178 v~~l~q~GN~lfk~~~ykEA~~~YreAi~~l~~L~lkEkP~e~eW~eLdk~~tpLllNy~QC~L~~~e~yevleh~seiL  257 (329)
T KOG0545|consen  178 VPVLHQEGNRLFKLGRYKEASSKYREAIICLRNLQLKEKPGEPEWLELDKMITPLLLNYCQCLLKKEEYYEVLEHCSEIL  257 (329)
T ss_pred             hHHHHHhhhhhhhhccHHHHHHHHHHHHHHHHHHHhccCCCChHHHHHHHhhhHHHHhHHHHHhhHHHHHHHHHHHHHHH
Confidence            45688889999999999999999998862        34443          3478899999999999999999999999


Q ss_pred             hhCCCcHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCCCccc
Q 017811          295 KFAPEDKSIARELRLLAEHEKAVYKKQKEIYKGIFGPRPEPKQ  337 (365)
Q Consensus       295 ~l~P~n~~~~~~l~~l~~~~~~~~~~~k~~y~kmf~~~~~~~~  337 (365)
                      ..+|.|..+....++.+. -.......+..+.+.+..+|....
T Consensus       258 ~~~~~nvKA~frRakAha-a~Wn~~eA~~D~~~vL~ldpslas  299 (329)
T KOG0545|consen  258 RHHPGNVKAYFRRAKAHA-AVWNEAEAKADLQKVLELDPSLAS  299 (329)
T ss_pred             hcCCchHHHHHHHHHHHH-hhcCHHHHHHHHHHHHhcChhhHH
Confidence            999998766654444322 222334567779999998885443

>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A

Probab=96.71  E-value=0.0031  Score=38.78  Aligned_cols=29  Identities=28%  Similarity=0.256  Sum_probs=25.0

Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHhhC
Q 017811          269 ALFRRGKARAELGQTDAAREDFLKAGKFA  297 (365)
Q Consensus       269 a~~~~g~a~~~l~~~~~A~~~l~~al~l~  297 (365)
                      ||.++|.+|..+|+|++|+..|+++|.+.
T Consensus         1 al~~Lg~~~~~~g~~~~Ai~~y~~aL~l~   29 (36)
T PF13176_consen    1 ALNNLGRIYRQQGDYEKAIEYYEQALALA   29 (36)
T ss_dssp             HHHHHHHHHHHCT-HHHHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHcCCHHHHHHHHHHHHHhc
Confidence            68899999999999999999999966553

>COG4105 ComL DNA uptake lipoprotein [General function prediction only]

Probab=96.71  E-value=0.07  Score=47.87  Aligned_cols=127  Identities=14%  Similarity=0.043  Sum_probs=89.6

Q ss_pred             hhhHHHHHHHHhcCHHHHHHHHHHHHhCCCCC---HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCcHHHHH--HHHH
Q 017811          235 CHLNMAACLLKLKRYEEAIGQCSLVLGEDENN---VKALFRRGKARAELGQTDAAREDFLKAGKFAPEDKSIAR--ELRL  309 (365)
Q Consensus       235 ~~~nla~~~~kl~~~~~A~~~~~~aL~~~p~n---~ka~~~~g~a~~~l~~~~~A~~~l~~al~l~P~n~~~~~--~l~~  309 (365)
                      -+++-|...+.-|+|.+|+..++.+....|.+   .++..-++.+++..++|++|+..+.+-+.+.|.++.+-.  .|.-
T Consensus        36 ~LY~~g~~~L~~gn~~~A~~~fe~l~~~~p~s~~~~qa~l~l~yA~Yk~~~y~~A~~~~drFi~lyP~~~n~dY~~Ylkg  115 (254)
T COG4105          36 ELYNEGLTELQKGNYEEAIKYFEALDSRHPFSPYSEQAQLDLAYAYYKNGEYDLALAYIDRFIRLYPTHPNADYAYYLKG  115 (254)
T ss_pred             HHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCCChhHHHHHHH
Confidence            48899999999999999999999999988765   589999999999999999999999999999998754432  2222


Q ss_pred             HHH--------HHHHHHHHHHHHHhcccCCCCCcccc------chhHHHHHHHHHHHHHHHHhhhc
Q 017811          310 LAE--------HEKAVYKKQKEIYKGIFGPRPEPKQK------KNWLIIFWQLLVSLVLGLFKRKR  361 (365)
Q Consensus       310 l~~--------~~~~~~~~~k~~y~kmf~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~  361 (365)
                      +-.        +-...-...-..++.++.+-|++.-.      ..+..-.+...=..|.++|.++.
T Consensus       116 Ls~~~~i~~~~rDq~~~~~A~~~f~~~i~ryPnS~Ya~dA~~~i~~~~d~LA~~Em~IaryY~kr~  181 (254)
T COG4105         116 LSYFFQIDDVTRDQSAARAAFAAFKELVQRYPNSRYAPDAKARIVKLNDALAGHEMAIARYYLKRG  181 (254)
T ss_pred             HHHhccCCccccCHHHHHHHHHHHHHHHHHCCCCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence            211        11112222333355666666654432      45555555555566666666554

>PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis []

Probab=96.66  E-value=0.072  Score=49.18  Aligned_cols=124  Identities=14%  Similarity=0.085  Sum_probs=92.6

Q ss_pred             CCCHHHHHHHHHHhhhhhhhhhhhh-hHHHHHHHHHHHHHhhccchhhhhhhhHHHHHHHhhchhhhHHHHHHHHhcCHH
Q 017811          172 DMTVEERIGAADRRKMDGNALFKEE-KLEEAMQQYEMAIAYMGDDFMFQLFGKYRDMALAVKNPCHLNMAACLLKLKRYE  250 (365)
Q Consensus       172 ~~~~~e~~~~a~~~k~~G~~~~~~~-~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~kl~~~~  250 (365)
                      .+++......+..+.+.|..+++++ +|..|+...++|+++++....   .........+++..++..++.+|+..+.++
T Consensus        25 ~~~~~~~~~La~~~yn~G~~l~~~~~~~~~a~~wL~~a~~~l~~~~~---~~~~~~~~~elr~~iL~~La~~~l~~~~~~  101 (278)
T PF08631_consen   25 SLDPDMAEELARVCYNIGKSLLSKKDKYEEAVKWLQRAYDILEKPGK---MDKLSPDGSELRLSILRLLANAYLEWDTYE  101 (278)
T ss_pred             cCCcHHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhhhh---ccccCCcHHHHHHHHHHHHHHHHHcCCChH
Confidence            4566677788999999999999999 999999999999999754211   112223345678889999999999998765


Q ss_pred             HH---HHHHHHHHhCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC
Q 017811          251 EA---IGQCSLVLGEDENNVKALFRRGKARAELGQTDAAREDFLKAGKFAP  298 (365)
Q Consensus       251 ~A---~~~~~~aL~~~p~n~ka~~~~g~a~~~l~~~~~A~~~l~~al~l~P  298 (365)
                      ..   ....+.+-...|+.+-.++-.=.++...++.+++...+.+++.--+
T Consensus       102 ~~~ka~~~l~~l~~e~~~~~~~~~L~l~il~~~~~~~~~~~~L~~mi~~~~  152 (278)
T PF08631_consen  102 SVEKALNALRLLESEYGNKPEVFLLKLEILLKSFDEEEYEEILMRMIRSVD  152 (278)
T ss_pred             HHHHHHHHHHHHHHhCCCCcHHHHHHHHHHhccCChhHHHHHHHHHHHhcc
Confidence            43   3333344455677777776666666668999999999998887544

It is also involved in sporulation [].

>KOG3824 consensus Huntingtin interacting protein HYPE [General function prediction only]

Probab=96.65  E-value=0.0079  Score=55.01  Aligned_cols=73  Identities=19%  Similarity=0.150  Sum_probs=65.5

Q ss_pred             hhHHHHHHHHhcCHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCcHHHHHHHH
Q 017811          236 HLNMAACLLKLKRYEEAIGQCSLVLGEDENNVKALFRRGKARAELGQTDAAREDFLKAGKFAPEDKSIARELR  308 (365)
Q Consensus       236 ~~nla~~~~kl~~~~~A~~~~~~aL~~~p~n~ka~~~~g~a~~~l~~~~~A~~~l~~al~l~P~n~~~~~~l~  308 (365)
                      -++.|.-..+.|+.++|...+..||.++|.|+.++.++|....+-++.-+|-.+|-+||.++|.|.++.....
T Consensus       119 Al~~A~~~~~~Gk~ekA~~lfeHAlalaP~~p~~L~e~G~f~E~~~~iv~ADq~Y~~ALtisP~nseALvnR~  191 (472)
T KOG3824|consen  119 ALKAAGRSRKDGKLEKAMTLFEHALALAPTNPQILIEMGQFREMHNEIVEADQCYVKALTISPGNSEALVNRA  191 (472)
T ss_pred             HHHHHHHHHhccchHHHHHHHHHHHhcCCCCHHHHHHHhHHHHhhhhhHhhhhhhheeeeeCCCchHHHhhhh
Confidence            3456666678899999999999999999999999999999999999999999999999999999988776544

>PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans

Probab=96.63  E-value=0.012  Score=58.51  Aligned_cols=101  Identities=25%  Similarity=0.281  Sum_probs=80.5

Q ss_pred             HhhhhhhhhhhhhhHHHHHHHHHHHHHhhccchhhhhhhhHHHHHHHhhchhhhHHHHHHHHhcCHHHHHHHHHHHHhCC
Q 017811          184 RRKMDGNALFKEEKLEEAMQQYEMAIAYMGDDFMFQLFGKYRDMALAVKNPCHLNMAACLLKLKRYEEAIGQCSLVLGED  263 (365)
Q Consensus       184 ~~k~~G~~~~~~~~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~kl~~~~~A~~~~~~aL~~~  263 (365)
                      -+...|..+...|+.++|+..|++|+.....             ..++..-+++.+|.|++-+.+|++|..++...++..
T Consensus       269 fl~~~gR~~~~~g~~~~Ai~~~~~a~~~q~~-------------~~Ql~~l~~~El~w~~~~~~~w~~A~~~f~~L~~~s  335 (468)
T PF10300_consen  269 FLFFEGRLERLKGNLEEAIESFERAIESQSE-------------WKQLHHLCYFELAWCHMFQHDWEEAAEYFLRLLKES  335 (468)
T ss_pred             HHHHHHHHHHHhcCHHHHHHHHHHhccchhh-------------HHhHHHHHHHHHHHHHHHHchHHHHHHHHHHHHhcc
Confidence            3456888889999999999999999843221             234556689999999999999999999999999966


Q ss_pred             CCCHHHHH--HHHHHHHHcCCH-------HHHHHHHHHHHhhCC
Q 017811          264 ENNVKALF--RRGKARAELGQT-------DAAREDFLKAGKFAP  298 (365)
Q Consensus       264 p~n~ka~~--~~g~a~~~l~~~-------~~A~~~l~~al~l~P  298 (365)
                      . ..+++|  -.|.|+..+++.       ++|...|.++-.+-.
T Consensus       336 ~-WSka~Y~Y~~a~c~~~l~~~~~~~~~~~~a~~l~~~vp~l~~  378 (468)
T PF10300_consen  336 K-WSKAFYAYLAAACLLMLGREEEAKEHKKEAEELFRKVPKLKQ  378 (468)
T ss_pred             c-cHHHHHHHHHHHHHHhhccchhhhhhHHHHHHHHHHHHHHHh
Confidence            5 445554  578899999999       888888888766543

In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus.

>KOG4340 consensus Uncharacterized conserved protein [Function unknown]

Probab=96.59  E-value=0.035  Score=50.77  Aligned_cols=86  Identities=8%  Similarity=-0.012  Sum_probs=73.9

Q ss_pred             hhhhhhHHHHHHHHHHHHHhhccchhhhhhhhHHHHHHHhhchhhhHHHHHHHHhcCHHHHHHHHHHHHhCCCCCHHHHH
Q 017811          192 LFKEEKLEEAMQQYEMAIAYMGDDFMFQLFGKYRDMALAVKNPCHLNMAACLLKLKRYEEAIGQCSLVLGEDENNVKALF  271 (365)
Q Consensus       192 ~~~~~~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~kl~~~~~A~~~~~~aL~~~p~n~ka~~  271 (365)
                      +.+..+|..||++..--.+..|.+.                 ..+.-||.||+...+|..|..+|.+.-.+.|...+-.+
T Consensus        20 lI~d~ry~DaI~~l~s~~Er~p~~r-----------------AgLSlLgyCYY~~Q~f~~AA~CYeQL~ql~P~~~qYrl   82 (459)
T KOG4340|consen   20 LIRDARYADAIQLLGSELERSPRSR-----------------AGLSLLGYCYYRLQEFALAAECYEQLGQLHPELEQYRL   82 (459)
T ss_pred             HHHHhhHHHHHHHHHHHHhcCccch-----------------HHHHHHHHHHHHHHHHHHHHHHHHHHHhhChHHHHHHH
Confidence            4677888999988887777777542                 23788999999999999999999999999999999999


Q ss_pred             HHHHHHHHcCCHHHHHHHHHHHH
Q 017811          272 RRGKARAELGQTDAAREDFLKAG  294 (365)
Q Consensus       272 ~~g~a~~~l~~~~~A~~~l~~al  294 (365)
                      ..++.++.-+.|.+|+.......
T Consensus        83 Y~AQSLY~A~i~ADALrV~~~~~  105 (459)
T KOG4340|consen   83 YQAQSLYKACIYADALRVAFLLL  105 (459)
T ss_pred             HHHHHHHHhcccHHHHHHHHHhc
Confidence            99999999999999987766554

>KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures]

Probab=96.57  E-value=0.021  Score=53.44  Aligned_cols=126  Identities=17%  Similarity=0.161  Sum_probs=86.6

Q ss_pred             hhhhhhhhhhhHHHHHHHHHHHHHhhccchhhhhhhhHHHHHHHhhchhhhHHHHHHHHhcCHHHHHHHHHHHHhCC---
Q 017811          187 MDGNALFKEEKLEEAMQQYEMAIAYMGDDFMFQLFGKYRDMALAVKNPCHLNMAACLLKLKRYEEAIGQCSLVLGED---  263 (365)
Q Consensus       187 ~~G~~~~~~~~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~kl~~~~~A~~~~~~aL~~~---  263 (365)
                      ..|+.+...+-|++|+..|++|+++...+.+.           -+-..++..|+..|-.++++++|+-+..+|+++-   
T Consensus       127 ~~~~Ahlgls~fq~~Lesfe~A~~~A~~~~D~-----------~LElqvcv~Lgslf~~l~D~~Kal~f~~kA~~lv~s~  195 (518)
T KOG1941|consen  127 SMGNAHLGLSVFQKALESFEKALRYAHNNDDA-----------MLELQVCVSLGSLFAQLKDYEKALFFPCKAAELVNSY  195 (518)
T ss_pred             hHHHHhhhHHHHHHHHHHHHHHHHHhhccCCc-----------eeeeehhhhHHHHHHHHHhhhHHhhhhHhHHHHHHhc
Confidence            37889999999999999999999987653221           1123468888888888888888888888877653   


Q ss_pred             ---CCCH----HHHHHHHHHHHHcCCHHHHHHHHHHHHhhC--CCcHHH----HHHHHHHHHHHHHHHHHHHH
Q 017811          264 ---ENNV----KALFRRGKARAELGQTDAAREDFLKAGKFA--PEDKSI----ARELRLLAEHEKAVYKKQKE  323 (365)
Q Consensus       264 ---p~n~----ka~~~~g~a~~~l~~~~~A~~~l~~al~l~--P~n~~~----~~~l~~l~~~~~~~~~~~k~  323 (365)
                         ..|.    -++|+++.++..+|+.-+|.+..+.+.++.  -.|..+    ..-++.+++...+.+...++
T Consensus       196 ~l~d~~~kyr~~~lyhmaValR~~G~LgdA~e~C~Ea~klal~~Gdra~~arc~~~~aDIyR~~gd~e~af~r  268 (518)
T KOG1941|consen  196 GLKDWSLKYRAMSLYHMAVALRLLGRLGDAMECCEEAMKLALQHGDRALQARCLLCFADIYRSRGDLERAFRR  268 (518)
T ss_pred             CcCchhHHHHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHhcccHhHHHHH
Confidence               2333    378888888888888888888888777653  233322    22344555544444444433

>KOG1308 consensus Hsp70-interacting protein Hip/Transient component of progesterone receptor complexes and an Hsp70-binding protein [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]

Probab=96.54  E-value=0.00088  Score=61.90  Aligned_cols=108  Identities=10%  Similarity=-0.033  Sum_probs=77.5

Q ss_pred             HHHhcCHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHHHHHHHHHH
Q 017811          243 LLKLKRYEEAIGQCSLVLGEDENNVKALFRRGKARAELGQTDAAREDFLKAGKFAPEDKSIARELRLLAEHEKAVYKKQK  322 (365)
Q Consensus       243 ~~kl~~~~~A~~~~~~aL~~~p~n~ka~~~~g~a~~~l~~~~~A~~~l~~al~l~P~n~~~~~~l~~l~~~~~~~~~~~k  322 (365)
                      .+..|+++.|+.+|..+++++|.+.-.|-.|+.+++.+++...|+.++..|++++|+...-.......++.++...++.+
T Consensus       124 Aln~G~~~~ai~~~t~ai~lnp~~a~l~~kr~sv~lkl~kp~~airD~d~A~ein~Dsa~~ykfrg~A~rllg~~e~aa~  203 (377)
T KOG1308|consen  124 ALNDGEFDTAIELFTSAIELNPPLAILYAKRASVFLKLKKPNAAIRDCDFAIEINPDSAKGYKFRGYAERLLGNWEEAAH  203 (377)
T ss_pred             HhcCcchhhhhcccccccccCCchhhhcccccceeeeccCCchhhhhhhhhhccCcccccccchhhHHHHHhhchHHHHH
Confidence            34567799999999999999999999999999999999999999999999999999876655555655555555544333


Q ss_pred             HHHhcccCCCCCccccchhHHHHHHHHHHH
Q 017811          323 EIYKGIFGPRPEPKQKKNWLIIFWQLLVSL  352 (365)
Q Consensus       323 ~~y~kmf~~~~~~~~~~~~~~~~~~~~~~~  352 (365)
                      . +......+-+ .....|++-+...+.++
T Consensus       204 d-l~~a~kld~d-E~~~a~lKeV~p~a~ki  231 (377)
T KOG1308|consen  204 D-LALACKLDYD-EANSATLKEVFPNAGKI  231 (377)
T ss_pred             H-HHHHHhcccc-HHHHHHHHHhccchhhh
Confidence            3 4444332221 12244555444444433

>KOG4507 consensus Uncharacterized conserved protein, contains TPR repeats [Function unknown]

Probab=96.50  E-value=0.011  Score=58.25  Aligned_cols=103  Identities=13%  Similarity=0.063  Sum_probs=87.0

Q ss_pred             hhhhhhhhhh-hhhHHHHHHHHHHHHHhhccchhhhhhhhHHHHHHHhhchhhhHHHHHHHHhcCHHHHHHHHHHHHhCC
Q 017811          185 RKMDGNALFK-EEKLEEAMQQYEMAIAYMGDDFMFQLFGKYRDMALAVKNPCHLNMAACLLKLKRYEEAIGQCSLVLGED  263 (365)
Q Consensus       185 ~k~~G~~~~~-~~~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~kl~~~~~A~~~~~~aL~~~  263 (365)
                      ++..+..|++ +|+..+|+.+|..|+-+.++...               ..+++.+|.++.++|.-.+|--.+..|+.-.
T Consensus       215 lH~~as~YWR~~G~~~~A~~Ca~~a~hf~~~h~k---------------di~lLSlaTiL~RaG~sadA~iILhAA~~dA  279 (886)
T KOG4507|consen  215 LHNMASFYWRIKGEPYQAVECAMRALHFSSRHNK---------------DIALLSLATVLHRAGFSADAAVILHAALDDA  279 (886)
T ss_pred             HHHHHHHHHHHcCChhhhhHHHHHHhhhCCcccc---------------cchhhhHHHHHHHcccccchhheeehhccCC
Confidence            4456666665 79999999999999999887422               2358899999999999999988888888887


Q ss_pred             CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCcHH
Q 017811          264 ENNVKALFRRGKARAELGQTDAAREDFLKAGKFAPEDKS  302 (365)
Q Consensus       264 p~n~ka~~~~g~a~~~l~~~~~A~~~l~~al~l~P~n~~  302 (365)
                      |.-..-+|-+|+++.++++|......|..+++.+|....
T Consensus       280 ~~~t~n~y~l~~i~aml~~~N~S~~~ydha~k~~p~f~q  318 (886)
T KOG4507|consen  280 DFFTSNYYTLGNIYAMLGEYNHSVLCYDHALQARPGFEQ  318 (886)
T ss_pred             ccccccceeHHHHHHHHhhhhhhhhhhhhhhccCcchhH
Confidence            776777999999999999999999999999999997533

>PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production

Probab=96.47  E-value=0.056  Score=44.47  Aligned_cols=106  Identities=20%  Similarity=0.147  Sum_probs=70.8

Q ss_pred             hHHHHHHHHhcCHHHHHHHHHHHHhCCCC----------------------CHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 017811          237 LNMAACLLKLKRYEEAIGQCSLVLGEDEN----------------------NVKALFRRGKARAELGQTDAAREDFLKAG  294 (365)
Q Consensus       237 ~nla~~~~kl~~~~~A~~~~~~aL~~~p~----------------------n~ka~~~~g~a~~~l~~~~~A~~~l~~al  294 (365)
                      ...|......++...++..+.+++.+...                      ...++.+++.++...|++++|+..+++++
T Consensus        10 ~~~a~~~~~~~~~~~~~~~~~~al~ly~G~~l~~~~~~~W~~~~r~~l~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~l   89 (146)
T PF03704_consen   10 VREARAAARAGDPEEAIELLEEALALYRGDFLPDLDDEEWVEPERERLRELYLDALERLAEALLEAGDYEEALRLLQRAL   89 (146)
T ss_dssp             HHHHHHHHHTT-HHHHHHHHHHHHTT--SSTTGGGTTSTTHHHHHHHHHHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHH
T ss_pred             HHHHHHHHHCCCHHHHHHHHHHHHHHhCCCCCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHH
Confidence            34455566677889999999998876421                      13477778889999999999999999999


Q ss_pred             hhCCCcHHHHHHHHHHHHHHHHHHHHHH------HHHhcccCCCCCccccchhH
Q 017811          295 KFAPEDKSIARELRLLAEHEKAVYKKQK------EIYKGIFGPRPEPKQKKNWL  342 (365)
Q Consensus       295 ~l~P~n~~~~~~l~~l~~~~~~~~~~~k------~~y~kmf~~~~~~~~~~~~~  342 (365)
                      .++|-|..+...+-.+....++.....+      ..+..-|+..|.......|.
T Consensus        90 ~~dP~~E~~~~~lm~~~~~~g~~~~A~~~Y~~~~~~l~~elg~~Ps~~~~~l~~  143 (146)
T PF03704_consen   90 ALDPYDEEAYRLLMRALAAQGRRAEALRVYERYRRRLREELGIEPSPETRALYR  143 (146)
T ss_dssp             HHSTT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHHHS----HHHHHHHH
T ss_pred             hcCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHHhCcCcCHHHHHHHH
Confidence            9999999999998888776666544333      33334466666555444444

It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A.

>COG2912 Uncharacterized conserved protein [Function unknown]

Probab=96.46  E-value=0.022  Score=51.48  Aligned_cols=77  Identities=22%  Similarity=0.211  Sum_probs=69.5

Q ss_pred             HhhchhhhHHHHHHHHhcCHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCcHHHHHH
Q 017811          230 AVKNPCHLNMAACLLKLKRYEEAIGQCSLVLGEDENNVKALFRRGKARAELGQTDAAREDFLKAGKFAPEDKSIARE  306 (365)
Q Consensus       230 ~~~~~~~~nla~~~~kl~~~~~A~~~~~~aL~~~p~n~ka~~~~g~a~~~l~~~~~A~~~l~~al~l~P~n~~~~~~  306 (365)
                      ++...+..|+=..|+..++|+.|..+..+.|.++|.++-.+--+|.+|.++|.+.-|+.++...++..|+++.+...
T Consensus       178 ~il~rll~~lk~~~~~e~~~~~al~~~~r~l~l~P~dp~eirDrGliY~ql~c~~vAl~dl~~~~~~~P~~~~a~~i  254 (269)
T COG2912         178 EILSRLLRNLKAALLRELQWELALRVAERLLDLNPEDPYEIRDRGLIYAQLGCYHVALEDLSYFVEHCPDDPIAEMI  254 (269)
T ss_pred             HHHHHHHHHHHHHHHHhhchHHHHHHHHHHHhhCCCChhhccCcHHHHHhcCCchhhHHHHHHHHHhCCCchHHHHH
Confidence            34456688888999999999999999999999999999999999999999999999999999999999998765433

>KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning]

Probab=96.46  E-value=0.15  Score=49.54  Aligned_cols=125  Identities=14%  Similarity=0.095  Sum_probs=73.6

Q ss_pred             hhhhHHHHHHHHHHHHHhhccchhhhhhhhHHHHHHHhhchhhhHHHHHHHHhcCHHHHHHHHHHHHhCCCCCHHHHHHH
Q 017811          194 KEEKLEEAMQQYEMAIAYMGDDFMFQLFGKYRDMALAVKNPCHLNMAACLLKLKRYEEAIGQCSLVLGEDENNVKALFRR  273 (365)
Q Consensus       194 ~~~~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~kl~~~~~A~~~~~~aL~~~p~n~ka~~~~  273 (365)
                      ...+...+...|+.||++.|.....             .+++++-.|.-.++..+...|...+-.||...|. .|.+--.
T Consensus       378 e~ed~ertr~vyq~~l~lIPHkkFt-------------FaKiWlmyA~feIRq~~l~~ARkiLG~AIG~cPK-~KlFk~Y  443 (677)
T KOG1915|consen  378 EAEDVERTRQVYQACLDLIPHKKFT-------------FAKIWLMYAQFEIRQLNLTGARKILGNAIGKCPK-DKLFKGY  443 (677)
T ss_pred             HhhhHHHHHHHHHHHHhhcCcccch-------------HHHHHHHHHHHHHHHcccHHHHHHHHHHhccCCc-hhHHHHH
Confidence            4577888999999999999864221             1344555555555666666666666666666553 2222223


Q ss_pred             HHHHHHcCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCC
Q 017811          274 GKARAELGQTDAAREDFLKAGKFAPEDKSIARELRLLAEHEKAVYKKQKEIYKGIFGPRP  333 (365)
Q Consensus       274 g~a~~~l~~~~~A~~~l~~al~l~P~n~~~~~~l~~l~~~~~~~~~~~k~~y~kmf~~~~  333 (365)
                      -..-.++++++.....|.+-|+..|.|-.+....+.+...+++.+ ..+..|.-..+++.
T Consensus       444 IelElqL~efDRcRkLYEkfle~~Pe~c~~W~kyaElE~~Lgdtd-RaRaifelAi~qp~  502 (677)
T KOG1915|consen  444 IELELQLREFDRCRKLYEKFLEFSPENCYAWSKYAELETSLGDTD-RARAIFELAISQPA  502 (677)
T ss_pred             HHHHHHHhhHHHHHHHHHHHHhcChHhhHHHHHHHHHHHHhhhHH-HHHHHHHHHhcCcc
Confidence            334445566666666666666666666666666666555555543 34455555555544

>KOG2396 consensus HAT (Half-A-TPR) repeat-containing protein [General function prediction only]

Probab=96.44  E-value=0.19  Score=49.14  Aligned_cols=115  Identities=19%  Similarity=0.163  Sum_probs=89.6

Q ss_pred             HHHHHHHHHHHHHhhccchhhhhhhhHHHHHHHhhchhhhHHHHHHHHhcCHHHHHHHHHHHHhCCCCCHHHHHHHHHHH
Q 017811          198 LEEAMQQYEMAIAYMGDDFMFQLFGKYRDMALAVKNPCHLNMAACLLKLKRYEEAIGQCSLVLGEDENNVKALFRRGKAR  277 (365)
Q Consensus       198 y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~kl~~~~~A~~~~~~aL~~~p~n~ka~~~~g~a~  277 (365)
                      -.+-...|+.|+.-.+.|..                 ++++......+.+.+.+.-..|.++|...|+|+..|..-|.=.
T Consensus        87 ~~rIv~lyr~at~rf~~D~~-----------------lW~~yi~f~kk~~~~~~v~ki~~~~l~~Hp~~~dLWI~aA~we  149 (568)
T KOG2396|consen   87 PNRIVFLYRRATNRFNGDVK-----------------LWLSYIAFCKKKKTYGEVKKIFAAMLAKHPNNPDLWIYAAKWE  149 (568)
T ss_pred             HHHHHHHHHHHHHhcCCCHH-----------------HHHHHHHHHHHhcchhHHHHHHHHHHHhCCCCchhHHhhhhhH
Confidence            34556789999988887633                 3666655555666799999999999999999999999999888


Q ss_pred             HHcCC-HHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHHHHHHHHHHHHHhccc
Q 017811          278 AELGQ-TDAAREDFLKAGKFAPEDKSIARELRLLAEHEKAVYKKQKEIYKGIF  329 (365)
Q Consensus       278 ~~l~~-~~~A~~~l~~al~l~P~n~~~~~~l~~l~~~~~~~~~~~k~~y~kmf  329 (365)
                      +..+. .+.|...|.++|+.+|+++.++.+.-++...--....+.+.......
T Consensus       150 fe~n~ni~saRalflrgLR~npdsp~Lw~eyfrmEL~~~~Kl~~rr~~~g~~~  202 (568)
T KOG2396|consen  150 FEINLNIESARALFLRGLRFNPDSPKLWKEYFRMELMYAEKLRNRREELGLDS  202 (568)
T ss_pred             HhhccchHHHHHHHHHHhhcCCCChHHHHHHHHHHHHHHHHHHHHHHHhcccc
Confidence            88777 89999999999999999999988876665555555555555444443

>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional

Probab=96.34  E-value=0.027  Score=58.95  Aligned_cols=115  Identities=8%  Similarity=-0.084  Sum_probs=75.8

Q ss_pred             HHHhhhhhhhhhhhhhHHHHHHHHHHHHHhh---ccchhh----------hhhhhHHHHHHHh----hchhhhHHHHHHH
Q 017811          182 ADRRKMDGNALFKEEKLEEAMQQYEMAIAYM---GDDFMF----------QLFGKYRDMALAV----KNPCHLNMAACLL  244 (365)
Q Consensus       182 a~~~k~~G~~~~~~~~y~~A~~~y~~al~~~---~~~~~~----------~~~~~~~~~~~~~----~~~~~~nla~~~~  244 (365)
                      ...+...-+.+.+.|.+++|...|....+..   |+...+          +..++-.+.+..+    ....|..+..++.
T Consensus       426 ~~T~~~ll~a~~~~g~~~~a~~~f~~m~~~~g~~p~~~~y~~li~~l~r~G~~~eA~~~~~~~~~~p~~~~~~~Ll~a~~  505 (697)
T PLN03081        426 HVTFLAVLSACRYSGLSEQGWEIFQSMSENHRIKPRAMHYACMIELLGREGLLDEAYAMIRRAPFKPTVNMWAALLTACR  505 (697)
T ss_pred             HHHHHHHHHHHhcCCcHHHHHHHHHHHHHhcCCCCCccchHhHHHHHHhcCCHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Confidence            3445556666677777777777777765432   221100          0001111111111    1234677777788


Q ss_pred             HhcCHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Q 017811          245 KLKRYEEAIGQCSLVLGEDENNVKALFRRGKARAELGQTDAAREDFLKAGKF  296 (365)
Q Consensus       245 kl~~~~~A~~~~~~aL~~~p~n~ka~~~~g~a~~~l~~~~~A~~~l~~al~l  296 (365)
                      ..|+++.|...++++++++|++...|..++.+|...|++++|...++...+.
T Consensus       506 ~~g~~~~a~~~~~~l~~~~p~~~~~y~~L~~~y~~~G~~~~A~~v~~~m~~~  557 (697)
T PLN03081        506 IHKNLELGRLAAEKLYGMGPEKLNNYVVLLNLYNSSGRQAEAAKVVETLKRK  557 (697)
T ss_pred             HcCCcHHHHHHHHHHhCCCCCCCcchHHHHHHHHhCCCHHHHHHHHHHHHHc
Confidence            8889999999999999999988888999999999999999999888877644

>KOG2796 consensus Uncharacterized conserved protein [Function unknown]

Probab=96.33  E-value=0.1  Score=46.94  Aligned_cols=105  Identities=10%  Similarity=0.027  Sum_probs=84.3

Q ss_pred             chhhhHHHHHHHHhcCHHHHHHHHHHHHh----CC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCcHHHHHH
Q 017811          233 NPCHLNMAACLLKLKRYEEAIGQCSLVLG----ED--ENNVKALFRRGKARAELGQTDAAREDFLKAGKFAPEDKSIARE  306 (365)
Q Consensus       233 ~~~~~nla~~~~kl~~~~~A~~~~~~aL~----~~--p~n~ka~~~~g~a~~~l~~~~~A~~~l~~al~l~P~n~~~~~~  306 (365)
                      ..+...|+.+.++.|+-+.|..+++.+-+    ++  ..+.-++-+.+.+|.-.++|.+|...|.+++..||.|+.+...
T Consensus       212 p~L~s~Lgr~~MQ~GD~k~a~~yf~~vek~~~kL~~~q~~~~V~~n~a~i~lg~nn~a~a~r~~~~i~~~D~~~~~a~Nn  291 (366)
T KOG2796|consen  212 PQLLSGLGRISMQIGDIKTAEKYFQDVEKVTQKLDGLQGKIMVLMNSAFLHLGQNNFAEAHRFFTEILRMDPRNAVANNN  291 (366)
T ss_pred             HHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhhhhccchhHHHHhhhhhheecccchHHHHHHHhhccccCCCchhhhch
Confidence            34577899999999999999999995532    22  3456677788888888999999999999999999999999998


Q ss_pred             HHHHHHHHHHHHHHHHHHHhcccCCCCCcccc
Q 017811          307 LRLLAEHEKAVYKKQKEIYKGIFGPRPEPKQK  338 (365)
Q Consensus       307 l~~l~~~~~~~~~~~k~~y~kmf~~~~~~~~~  338 (365)
                      .+.|..-.++...+.|. ...|....|...-.
T Consensus       292 KALcllYlg~l~DAiK~-~e~~~~~~P~~~l~  322 (366)
T KOG2796|consen  292 KALCLLYLGKLKDALKQ-LEAMVQQDPRHYLH  322 (366)
T ss_pred             HHHHHHHHHHHHHHHHH-HHHHhccCCccchh
Confidence            88888777777777666 66677777755444

>COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms]

Probab=96.32  E-value=0.063  Score=49.22  Aligned_cols=107  Identities=18%  Similarity=0.114  Sum_probs=84.5

Q ss_pred             hhhhhhhhhHHHHHHHHHHHHHhhccchhhhhhhhHHHHHHHhhchhhhHHHHHHHHhcCHHHHHHHHHHHHhCCCCCHH
Q 017811          189 GNALFKEEKLEEAMQQYEMAIAYMGDDFMFQLFGKYRDMALAVKNPCHLNMAACLLKLKRYEEAIGQCSLVLGEDENNVK  268 (365)
Q Consensus       189 G~~~~~~~~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~kl~~~~~A~~~~~~aL~~~p~n~k  268 (365)
                      |......+++.++...+... -..+++..+.-..+.+..+.+...+++..++..+...++++.++...+..+.++|-+.+
T Consensus       110 ~~~~~~~~~~~~~~~~~~~g-~~~~d~~f~~WV~~~R~~l~e~~~~~l~~lae~~~~~~~~~~~~~~l~~Li~~dp~~E~  188 (280)
T COG3629         110 GLKARAGLRFEQAGELLSEG-PVLGDDRFDEWVLEQRRALEELFIKALTKLAEALIACGRADAVIEHLERLIELDPYDEP  188 (280)
T ss_pred             ccchhhhHHHHHHHHHhhcC-CcCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHhcCccchH
Confidence            33334444666666666542 22223333333456777888889999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHhh
Q 017811          269 ALFRRGKARAELGQTDAAREDFLKAGKF  296 (365)
Q Consensus       269 a~~~~g~a~~~l~~~~~A~~~l~~al~l  296 (365)
                      +|.++-.+|+..|+...|+..|++.-++
T Consensus       189 ~~~~lm~~y~~~g~~~~ai~~y~~l~~~  216 (280)
T COG3629         189 AYLRLMEAYLVNGRQSAAIRAYRQLKKT  216 (280)
T ss_pred             HHHHHHHHHHHcCCchHHHHHHHHHHHH
Confidence            9999999999999999999999887764

>PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins

Probab=96.29  E-value=0.094  Score=48.47  Aligned_cols=109  Identities=15%  Similarity=0.004  Sum_probs=80.5

Q ss_pred             hhhhhhhhhHHHHHHHHHHHHHhhccchhhhhhhhHHHHHHHhhchhhhHHHHHHHH-hcCHHHHHHHHHHHHhCCCCCH
Q 017811          189 GNALFKEEKLEEAMQQYEMAIAYMGDDFMFQLFGKYRDMALAVKNPCHLNMAACLLK-LKRYEEAIGQCSLVLGEDENNV  267 (365)
Q Consensus       189 G~~~~~~~~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~k-l~~~~~A~~~~~~aL~~~p~n~  267 (365)
                      .+..-+.+..+.|...|.+|++..+-.                 ..+|...|..-++ .++.+.|...|+.+++..|.+.
T Consensus         8 m~~~~r~~g~~~aR~vF~~a~~~~~~~-----------------~~vy~~~A~~E~~~~~d~~~A~~Ife~glk~f~~~~   70 (280)
T PF05843_consen    8 MRFMRRTEGIEAARKVFKRARKDKRCT-----------------YHVYVAYALMEYYCNKDPKRARKIFERGLKKFPSDP   70 (280)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHCCCCS------------------THHHHHHHHHHHHTCS-HHHHHHHHHHHHHHHTT-H
T ss_pred             HHHHHHhCChHHHHHHHHHHHcCCCCC-----------------HHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHCCCCH
Confidence            344445566888999999998443322                 2348888888666 5667779999999999999999


Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCcH---HHHHHHHHHHHHH
Q 017811          268 KALFRRGKARAELGQTDAAREDFLKAGKFAPEDK---SIARELRLLAEHE  314 (365)
Q Consensus       268 ka~~~~g~a~~~l~~~~~A~~~l~~al~l~P~n~---~~~~~l~~l~~~~  314 (365)
                      ..+.....-+..+++.+.|...|++++..-|...   .+....-......
T Consensus        71 ~~~~~Y~~~l~~~~d~~~aR~lfer~i~~l~~~~~~~~iw~~~i~fE~~~  120 (280)
T PF05843_consen   71 DFWLEYLDFLIKLNDINNARALFERAISSLPKEKQSKKIWKKFIEFESKY  120 (280)
T ss_dssp             HHHHHHHHHHHHTT-HHHHHHHHHHHCCTSSCHHHCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhCcHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHc
Confidence            9999999999999999999999999999888765   3444443333333

The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B.

>KOG3824 consensus Huntingtin interacting protein HYPE [General function prediction only]

Probab=96.29  E-value=0.012  Score=53.76  Aligned_cols=84  Identities=21%  Similarity=0.137  Sum_probs=70.5

Q ss_pred             HHHHHHHhhhhhhhhhhhhhHHHHHHHHHHHHHhhccchhhhhhhhHHHHHHHhhchhhhHHHHHHHHhcCHHHHHHHHH
Q 017811          178 RIGAADRRKMDGNALFKEEKLEEAMQQYEMAIAYMGDDFMFQLFGKYRDMALAVKNPCHLNMAACLLKLKRYEEAIGQCS  257 (365)
Q Consensus       178 ~~~~a~~~k~~G~~~~~~~~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~kl~~~~~A~~~~~  257 (365)
                      +.+.|......+....+.|+.++|...|..|+.+.|.++.                 ++..+|...-.-++.-+|-.+|.
T Consensus       112 ~~kEA~~Al~~A~~~~~~Gk~ekA~~lfeHAlalaP~~p~-----------------~L~e~G~f~E~~~~iv~ADq~Y~  174 (472)
T KOG3824|consen  112 KVKEAILALKAAGRSRKDGKLEKAMTLFEHALALAPTNPQ-----------------ILIEMGQFREMHNEIVEADQCYV  174 (472)
T ss_pred             hhHHHHHHHHHHHHHHhccchHHHHHHHHHHHhcCCCCHH-----------------HHHHHhHHHHhhhhhHhhhhhhh
Confidence            3455555566677778999999999999999999999755                 37788888777788899999999


Q ss_pred             HHHhCCCCCHHHHHHHHHHHH
Q 017811          258 LVLGEDENNVKALFRRGKARA  278 (365)
Q Consensus       258 ~aL~~~p~n~ka~~~~g~a~~  278 (365)
                      +||.++|.|.+|+.++++..-
T Consensus       175 ~ALtisP~nseALvnR~RT~p  195 (472)
T KOG3824|consen  175 KALTISPGNSEALVNRARTTP  195 (472)
T ss_pred             eeeeeCCCchHHHhhhhccch
Confidence            999999999999999987543

>PF09986 DUF2225: Uncharacterized protein conserved in bacteria (DUF2225); InterPro: IPR018708 This conserved bacterial family has no known function

Probab=96.25  E-value=0.093  Score=46.45  Aligned_cols=102  Identities=20%  Similarity=0.198  Sum_probs=74.6

Q ss_pred             hhhhhhhhhhHHHHHHHHHHHHHhhccchhhhhhhhHHHHHHHhhchhhhHHHHHHHHhcC-------HHHHHHHHHHHH
Q 017811          188 DGNALFKEEKLEEAMQQYEMAIAYMGDDFMFQLFGKYRDMALAVKNPCHLNMAACLLKLKR-------YEEAIGQCSLVL  260 (365)
Q Consensus       188 ~G~~~~~~~~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~kl~~-------~~~A~~~~~~aL  260 (365)
                      .+..+-....+.+|+..|.-||-...-...     .     ....+.+++.+|.+|-.+++       +..|+..|.+++
T Consensus        83 ~~~~~~~~Rt~~~ai~~YkLAll~~~~~~~-----~-----~s~~A~l~LrlAWlyR~~~~~~~E~~fl~~Al~~y~~a~  152 (214)
T PF09986_consen   83 KPRDFSGERTLEEAIESYKLALLCAQIKKE-----K-----PSKKAGLCLRLAWLYRDLGDEENEKRFLRKALEFYEEAY  152 (214)
T ss_pred             ccCCCCCCCCHHHHHHHHHHHHHHHHHhCC-----C-----HHHHHHHHHHHHHHhhccCCHHHHHHHHHHHHHHHHHHH
Confidence            344666778899999999999866421100     0     11345679999999999998       455666666666


Q ss_pred             hCCC------CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC
Q 017811          261 GEDE------NNVKALFRRGKARAELGQTDAAREDFLKAGKFAPE  299 (365)
Q Consensus       261 ~~~p------~n~ka~~~~g~a~~~l~~~~~A~~~l~~al~l~P~  299 (365)
                      +...      +....+|-+|.....+|++++|..+|.+++..--.
T Consensus       153 ~~e~~~~~~~~~~~l~YLigeL~rrlg~~~eA~~~fs~vi~~~~~  197 (214)
T PF09986_consen  153 ENEDFPIEGMDEATLLYLIGELNRRLGNYDEAKRWFSRVIGSKKA  197 (214)
T ss_pred             HhCcCCCCCchHHHHHHHHHHHHHHhCCHHHHHHHHHHHHcCCCC
Confidence            5442      23579999999999999999999999999986433

>PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene

Probab=96.25  E-value=0.062  Score=52.46  Aligned_cols=139  Identities=22%  Similarity=0.155  Sum_probs=89.2

Q ss_pred             CCCHHHHHHHHHHhhhhhh------hhhh---hhhHHHHHHHHHHHHHhhccchhhhh----hhhHHHH----HHHhhch
Q 017811          172 DMTVEERIGAADRRKMDGN------ALFK---EEKLEEAMQQYEMAIAYMGDDFMFQL----FGKYRDM----ALAVKNP  234 (365)
Q Consensus       172 ~~~~~e~~~~a~~~k~~G~------~~~~---~~~y~~A~~~y~~al~~~~~~~~~~~----~~~~~~~----~~~~~~~  234 (365)
                      +.+.+.+++.|.+-.+.-.      .+..   ..-..+|.++|++|++.-........    .+...+.    ......-
T Consensus       181 ERnp~aRIkaA~eALei~pdCAdAYILLAEEeA~Ti~Eae~l~rqAvkAgE~~lg~s~~~~~~g~~~e~~~~Rdt~~~~y  260 (539)
T PF04184_consen  181 ERNPQARIKAAKEALEINPDCADAYILLAEEEASTIVEAEELLRQAVKAGEASLGKSQFLQHHGHFWEAWHRRDTNVLVY  260 (539)
T ss_pred             cCCHHHHHHHHHHHHHhhhhhhHHHhhcccccccCHHHHHHHHHHHHHHHHHhhchhhhhhcccchhhhhhccccchhhh
Confidence            4455566666554333221      2222   22356788888888776654322110    0011010    1122234


Q ss_pred             hhhHHHHHHHHhcCHHHHHHHHHHHHhCCCC--CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh-CCCcHHHHHHHHHH
Q 017811          235 CHLNMAACLLKLKRYEEAIGQCSLVLGEDEN--NVKALFRRGKARAELGQTDAAREDFLKAGKF-APEDKSIARELRLL  310 (365)
Q Consensus       235 ~~~nla~~~~kl~~~~~A~~~~~~aL~~~p~--n~ka~~~~g~a~~~l~~~~~A~~~l~~al~l-~P~n~~~~~~l~~l  310 (365)
                      +...+|+|.-++|+.++|+..++..++..|.  +...++++..+++.++.|.++...+.+.-.+ -|+...+...-..+
T Consensus       261 ~KrRLAmCarklGr~~EAIk~~rdLlke~p~~~~l~IrenLie~LLelq~Yad~q~lL~kYdDi~lpkSAti~YTaALL  339 (539)
T PF04184_consen  261 AKRRLAMCARKLGRLREAIKMFRDLLKEFPNLDNLNIRENLIEALLELQAYADVQALLAKYDDISLPKSATICYTAALL  339 (539)
T ss_pred             hHHHHHHHHHHhCChHHHHHHHHHHHhhCCccchhhHHHHHHHHHHhcCCHHHHHHHHHHhccccCCchHHHHHHHHHH
Confidence            5678999999999999999999999988775  5679999999999999999999999997654 35555544443333

The molecular function of this protein is uncertain.

>KOG1586 consensus Protein required for fusion of vesicles in vesicular transport, alpha-SNAP [Intracellular trafficking, secretion, and vesicular transport]

Probab=96.21  E-value=0.055  Score=47.81  Aligned_cols=104  Identities=19%  Similarity=0.202  Sum_probs=78.7

Q ss_pred             hhhhhhhHHHHHHHHHHHHHhhccchhhhhhhhHHHHHHHhhchhhhHHHHHHHHh-cCHHHHHHHHHHHHhCCC-----
Q 017811          191 ALFKEEKLEEAMQQYEMAIAYMGDDFMFQLFGKYRDMALAVKNPCHLNMAACLLKL-KRYEEAIGQCSLVLGEDE-----  264 (365)
Q Consensus       191 ~~~~~~~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~kl-~~~~~A~~~~~~aL~~~p-----  264 (365)
                      .+|++.+..+|+.+..+||++..+.-.|..           ...-+..+|..|-.- .++++||.+|+++-+...     
T Consensus        82 ~cykk~~~~eAv~cL~~aieIyt~~Grf~~-----------aAk~~~~iaEiyEsdl~d~ekaI~~YE~Aae~yk~ees~  150 (288)
T KOG1586|consen   82 NCYKKVDPEEAVNCLEKAIEIYTDMGRFTM-----------AAKHHIEIAEIYESDLQDFEKAIAHYEQAAEYYKGEESV  150 (288)
T ss_pred             HHhhccChHHHHHHHHHHHHHHHhhhHHHH-----------HHhhhhhHHHHHhhhHHHHHHHHHHHHHHHHHHcchhhh
Confidence            456777888888999999988876433311           122366777777654 899999999999876432     


Q ss_pred             -CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCcHHHHH
Q 017811          265 -NNVKALFRRGKARAELGQTDAAREDFLKAGKFAPEDKSIAR  305 (365)
Q Consensus       265 -~n~ka~~~~g~a~~~l~~~~~A~~~l~~al~l~P~n~~~~~  305 (365)
                       .--|++...|.--..+++|.+|+..|+++....-+|.-...
T Consensus       151 ssANKC~lKvA~yaa~leqY~~Ai~iyeqva~~s~~n~LLKy  192 (288)
T KOG1586|consen  151 SSANKCLLKVAQYAAQLEQYSKAIDIYEQVARSSLDNNLLKY  192 (288)
T ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchHHHh
Confidence             33578999999999999999999999999988777754443

>COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown]

Probab=96.16  E-value=0.13  Score=44.09  Aligned_cols=107  Identities=14%  Similarity=0.103  Sum_probs=80.0

Q ss_pred             hhhhHHHHHHHHHHHHHhhccchhhhhhhhHHHHHHHhhchhhhHHHHHHHHhcCHHHHHHHHHHHHh-CCCCCHHHHHH
Q 017811          194 KEEKLEEAMQQYEMAIAYMGDDFMFQLFGKYRDMALAVKNPCHLNMAACLLKLKRYEEAIGQCSLVLG-EDENNVKALFR  272 (365)
Q Consensus       194 ~~~~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~kl~~~~~A~~~~~~aL~-~~p~n~ka~~~  272 (365)
                      ..=+.+++.+.-.+.+...|...                  -.+.||.....+|++.+|...|.+++. +-..+...+.-
T Consensus        68 q~ldP~R~~Rea~~~~~~ApTvq------------------nr~rLa~al~elGr~~EA~~hy~qalsG~fA~d~a~lLg  129 (251)
T COG4700          68 QKLDPERHLREATEELAIAPTVQ------------------NRYRLANALAELGRYHEAVPHYQQALSGIFAHDAAMLLG  129 (251)
T ss_pred             HhcChhHHHHHHHHHHhhchhHH------------------HHHHHHHHHHHhhhhhhhHHHHHHHhccccCCCHHHHHH
Confidence            33345555555556666655532                  278899999999999999999999985 66788999999


Q ss_pred             HHHHHHHcCCHHHHHHHHHHHHhhCCCc--HHHHHHHHHHHHHHHHHH
Q 017811          273 RGKARAELGQTDAAREDFLKAGKFAPED--KSIARELRLLAEHEKAVY  318 (365)
Q Consensus       273 ~g~a~~~l~~~~~A~~~l~~al~l~P~n--~~~~~~l~~l~~~~~~~~  318 (365)
                      ++++.+.++++..|...+++..+-+|.-  ++-.-.+.+....+.++.
T Consensus       130 lA~Aqfa~~~~A~a~~tLe~l~e~~pa~r~pd~~Ll~aR~laa~g~~a  177 (251)
T COG4700         130 LAQAQFAIQEFAAAQQTLEDLMEYNPAFRSPDGHLLFARTLAAQGKYA  177 (251)
T ss_pred             HHHHHHhhccHHHHHHHHHHHhhcCCccCCCCchHHHHHHHHhcCCch
Confidence            9999999999999999999999998852  333334444444444443

>PF14561 TPR_20: Tetratricopeptide repeat; PDB: 3QOU_A 2R5S_A 3QDN_B

Probab=96.16  E-value=0.035  Score=41.95  Aligned_cols=65  Identities=14%  Similarity=0.148  Sum_probs=51.0

Q ss_pred             HHHHHHHHHhCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCc--HHHHHHHHHHHHHHHH
Q 017811          252 AIGQCSLVLGEDENNVKALFRRGKARAELGQTDAAREDFLKAGKFAPED--KSIARELRLLAEHEKA  316 (365)
Q Consensus       252 A~~~~~~aL~~~p~n~ka~~~~g~a~~~l~~~~~A~~~l~~al~l~P~n--~~~~~~l~~l~~~~~~  316 (365)
                      .+..+.+.+..+|++..+.|.+|.+++..|++++|+..|-.++..+++.  ..+++.+-.+-..+..
T Consensus         7 ~~~al~~~~a~~P~D~~ar~~lA~~~~~~g~~e~Al~~Ll~~v~~dr~~~~~~ar~~ll~~f~~lg~   73 (90)
T PF14561_consen    7 DIAALEAALAANPDDLDARYALADALLAAGDYEEALDQLLELVRRDRDYEDDAARKRLLDIFELLGP   73 (90)
T ss_dssp             HHHHHHHHHHHSTT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHCC-TTCCCCHHHHHHHHHHHHH-T
T ss_pred             cHHHHHHHHHcCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCccccccHHHHHHHHHHHHcCC
Confidence            4567888999999999999999999999999999999999999999864  5666666555554444

>COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only]

Probab=95.96  E-value=0.012  Score=51.81  Aligned_cols=62  Identities=23%  Similarity=0.227  Sum_probs=57.2

Q ss_pred             HHHHHhcCHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCcHH
Q 017811          241 ACLLKLKRYEEAIGQCSLVLGEDENNVKALFRRGKARAELGQTDAAREDFLKAGKFAPEDKS  302 (365)
Q Consensus       241 ~~~~kl~~~~~A~~~~~~aL~~~p~n~ka~~~~g~a~~~l~~~~~A~~~l~~al~l~P~n~~  302 (365)
                      ....+.++.+.|.+.|.++|++-|.....|||+|......|+++.|...|.+.++++|.+..
T Consensus         3 ~~~~~~~D~~aaaely~qal~lap~w~~gwfR~g~~~ekag~~daAa~a~~~~L~ldp~D~~   64 (287)
T COG4976           3 YMLAESGDAEAAAELYNQALELAPEWAAGWFRLGEYTEKAGEFDAAAAAYEEVLELDPEDHG   64 (287)
T ss_pred             chhcccCChHHHHHHHHHHhhcCchhhhhhhhcchhhhhcccHHHHHHHHHHHHcCCccccc
Confidence            34567789999999999999999999999999999999999999999999999999998743

>PLN03077 Protein ECB2; Provisional

Probab=95.92  E-value=0.14  Score=55.06  Aligned_cols=130  Identities=10%  Similarity=0.037  Sum_probs=78.6

Q ss_pred             HhhhhhhhhhhhhhHHHHHHHHHHHHHh--hccchhhhhhhhHHHHHHHhhchhhhHHHHHHHHhcCHHHHHHHHHHHHh
Q 017811          184 RRKMDGNALFKEEKLEEAMQQYEMAIAY--MGDDFMFQLFGKYRDMALAVKNPCHLNMAACLLKLKRYEEAIGQCSLVLG  261 (365)
Q Consensus       184 ~~k~~G~~~~~~~~y~~A~~~y~~al~~--~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~kl~~~~~A~~~~~~aL~  261 (365)
                      .|......|.+.|+.++|+..|++.++.  .|+..                  .|..+-.++.+.|.+++|...++...+
T Consensus       556 s~n~lI~~~~~~G~~~~A~~lf~~M~~~g~~Pd~~------------------T~~~ll~a~~~~g~v~ea~~~f~~M~~  617 (857)
T PLN03077        556 SWNILLTGYVAHGKGSMAVELFNRMVESGVNPDEV------------------TFISLLCACSRSGMVTQGLEYFHSMEE  617 (857)
T ss_pred             hHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCcc------------------cHHHHHHHHhhcChHHHHHHHHHHHHH
Confidence            3556667778888888888888887653  23322                  244555567777788888887777663


Q ss_pred             C---CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCCCc
Q 017811          262 E---DENNVKALFRRGKARAELGQTDAAREDFLKAGKFAPEDKSIARELRLLAEHEKAVYKKQKEIYKGIFGPRPEP  335 (365)
Q Consensus       262 ~---~p~n~ka~~~~g~a~~~l~~~~~A~~~l~~al~l~P~n~~~~~~l~~l~~~~~~~~~~~k~~y~kmf~~~~~~  335 (365)
                      .   .| +...|..+..+|...|++++|...+++. .+.|+-......+..| ...+ ..+......+++|+..|++
T Consensus       618 ~~gi~P-~~~~y~~lv~~l~r~G~~~eA~~~~~~m-~~~pd~~~~~aLl~ac-~~~~-~~e~~e~~a~~l~~l~p~~  690 (857)
T PLN03077        618 KYSITP-NLKHYACVVDLLGRAGKLTEAYNFINKM-PITPDPAVWGALLNAC-RIHR-HVELGELAAQHIFELDPNS  690 (857)
T ss_pred             HhCCCC-chHHHHHHHHHHHhCCCHHHHHHHHHHC-CCCCCHHHHHHHHHHH-HHcC-ChHHHHHHHHHHHhhCCCC
Confidence            2   33 5567777788888888888887777764 3556533333333333 2222 2222233455666655543

>PRK04841 transcriptional regulator MalT; Provisional

Probab=95.91  E-value=0.13  Score=55.49  Aligned_cols=65  Identities=15%  Similarity=-0.056  Sum_probs=51.6

Q ss_pred             hhhhHHHHHHHHhcCHHHHHHHHHHHHhCCC--------CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC
Q 017811          234 PCHLNMAACLLKLKRYEEAIGQCSLVLGEDE--------NNVKALFRRGKARAELGQTDAAREDFLKAGKFAP  298 (365)
Q Consensus       234 ~~~~nla~~~~kl~~~~~A~~~~~~aL~~~p--------~n~ka~~~~g~a~~~l~~~~~A~~~l~~al~l~P  298 (365)
                      .++.++|.+++..|++++|...+.+++.+-.        ...-.+..+|.++...|++++|...+.+++.+..
T Consensus       532 ~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~  604 (903)
T PRK04841        532 WSLLQQSEILFAQGFLQAAYETQEKAFQLIEEQHLEQLPMHEFLLRIRAQLLWEWARLDEAEQCARKGLEVLS  604 (903)
T ss_pred             HHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHhcCHHHHHHHHHHhHHhhh
Confidence            3567889999999999999999999887521        1233456788899999999999999999987643

>KOG2610 consensus Uncharacterized conserved protein [Function unknown]

Probab=95.91  E-value=0.19  Score=46.86  Aligned_cols=112  Identities=17%  Similarity=0.177  Sum_probs=75.7

Q ss_pred             HHhhhhhhhhhhhhhHHHHHHHHHHHHHhhccchhh---h-----hhhhH---HHHHHHhh------ch----hhhHHHH
Q 017811          183 DRRKMDGNALFKEEKLEEAMQQYEMAIAYMGDDFMF---Q-----LFGKY---RDMALAVK------NP----CHLNMAA  241 (365)
Q Consensus       183 ~~~k~~G~~~~~~~~y~~A~~~y~~al~~~~~~~~~---~-----~~~~~---~~~~~~~~------~~----~~~nla~  241 (365)
                      ++....+..++.+|++.+|...+.+.|.-.|.+.-.   .     ..+..   ...+..+.      .+    ++--+|.
T Consensus       104 Ek~h~~aai~~~~g~~h~a~~~wdklL~d~PtDlla~kfsh~a~fy~G~~~~~k~ai~kIip~wn~dlp~~sYv~GmyaF  183 (491)
T KOG2610|consen  104 EKRHAKAAILWGRGKHHEAAIEWDKLLDDYPTDLLAVKFSHDAHFYNGNQIGKKNAIEKIIPKWNADLPCYSYVHGMYAF  183 (491)
T ss_pred             HhhhhhHHHhhccccccHHHHHHHHHHHhCchhhhhhhhhhhHHHhccchhhhhhHHHHhccccCCCCcHHHHHHHHHHh
Confidence            566777888999999999999999999998875321   0     00100   00111111      11    2233577


Q ss_pred             HHHHhcCHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 017811          242 CLLKLKRYEEAIGQCSLVLGEDENNVKALFRRGKARAELGQTDAAREDFLKAG  294 (365)
Q Consensus       242 ~~~kl~~~~~A~~~~~~aL~~~p~n~ka~~~~g~a~~~l~~~~~A~~~l~~al  294 (365)
                      |+...|-|++|....+++++++|.+..|..-.+.++...+++.++.+...+--
T Consensus       184 gL~E~g~y~dAEk~A~ralqiN~~D~Wa~Ha~aHVlem~~r~Keg~eFM~~te  236 (491)
T KOG2610|consen  184 GLEECGIYDDAEKQADRALQINRFDCWASHAKAHVLEMNGRHKEGKEFMYKTE  236 (491)
T ss_pred             hHHHhccchhHHHHHHhhccCCCcchHHHHHHHHHHHhcchhhhHHHHHHhcc
Confidence            77777888888888888888888888888888888888888888777766543

>KOG4340 consensus Uncharacterized conserved protein [Function unknown]

Probab=95.90  E-value=0.068  Score=48.90  Aligned_cols=123  Identities=18%  Similarity=0.135  Sum_probs=85.3

Q ss_pred             HhhhhhhhhhhhhhHHHHHHHHHHHHHhhccchhhhhhhhHHHHHHHhhchhhhHHHHHHHHhcCHHHHHHHH-------
Q 017811          184 RRKMDGNALFKEEKLEEAMQQYEMAIAYMGDDFMFQLFGKYRDMALAVKNPCHLNMAACLLKLKRYEEAIGQC-------  256 (365)
Q Consensus       184 ~~k~~G~~~~~~~~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~kl~~~~~A~~~~-------  256 (365)
                      .+.-.|..|+...+|..|..+|.+.-...|.-..+                 .+--|..+++.+.|..|+...       
T Consensus        46 gLSlLgyCYY~~Q~f~~AA~CYeQL~ql~P~~~qY-----------------rlY~AQSLY~A~i~ADALrV~~~~~D~~  108 (459)
T KOG4340|consen   46 GLSLLGYCYYRLQEFALAAECYEQLGQLHPELEQY-----------------RLYQAQSLYKACIYADALRVAFLLLDNP  108 (459)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhhChHHHHH-----------------HHHHHHHHHHhcccHHHHHHHHHhcCCH
Confidence            45668889999999999999999988887763221                 112222333333333333222       


Q ss_pred             -----------------------HHHHhCCC--CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHH
Q 017811          257 -----------------------SLVLGEDE--NNVKALFRRGKARAELGQTDAAREDFLKAGKFAPEDKSIARELRLLA  311 (365)
Q Consensus       257 -----------------------~~aL~~~p--~n~ka~~~~g~a~~~l~~~~~A~~~l~~al~l~P~n~~~~~~l~~l~  311 (365)
                                             +..++.-|  +......+.|..+++-|+|++|+.-|+.|++...-++-+...+..++
T Consensus       109 ~L~~~~lqLqaAIkYse~Dl~g~rsLveQlp~en~Ad~~in~gCllykegqyEaAvqkFqaAlqvsGyqpllAYniALaH  188 (459)
T KOG4340|consen  109 ALHSRVLQLQAAIKYSEGDLPGSRSLVEQLPSENEADGQINLGCLLYKEGQYEAAVQKFQAALQVSGYQPLLAYNLALAH  188 (459)
T ss_pred             HHHHHHHHHHHHHhcccccCcchHHHHHhccCCCccchhccchheeeccccHHHHHHHHHHHHhhcCCCchhHHHHHHHH
Confidence                                   22233334  45677888999999999999999999999999888888888888888


Q ss_pred             HHHHHHHHHHHH
Q 017811          312 EHEKAVYKKQKE  323 (365)
Q Consensus       312 ~~~~~~~~~~k~  323 (365)
                      -+.+++..+.+-
T Consensus       189 y~~~qyasALk~  200 (459)
T KOG4340|consen  189 YSSRQYASALKH  200 (459)
T ss_pred             HhhhhHHHHHHH
Confidence            777777665544

>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional

Probab=95.87  E-value=0.095  Score=54.93  Aligned_cols=146  Identities=12%  Similarity=-0.059  Sum_probs=103.1

Q ss_pred             HHHHhhhhhhhhhhhhhHHHHHHHHHHHHHh--hccchhhh----------hhhhHHHHHHHhh--------chhhhHHH
Q 017811          181 AADRRKMDGNALFKEEKLEEAMQQYEMAIAY--MGDDFMFQ----------LFGKYRDMALAVK--------NPCHLNMA  240 (365)
Q Consensus       181 ~a~~~k~~G~~~~~~~~y~~A~~~y~~al~~--~~~~~~~~----------~~~~~~~~~~~~~--------~~~~~nla  240 (365)
                      .+..+......|.+.|++++|+..|++.+..  .|+...+.          ..++-...+..+.        ...|..+.
T Consensus       390 d~~t~n~lI~~y~~~G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll~a~~~~g~~~~a~~~f~~m~~~~g~~p~~~~y~~li  469 (697)
T PLN03081        390 NLISWNALIAGYGNHGRGTKAVEMFERMIAEGVAPNHVTFLAVLSACRYSGLSEQGWEIFQSMSENHRIKPRAMHYACMI  469 (697)
T ss_pred             CeeeHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHhcCCcHHHHHHHHHHHHHhcCCCCCccchHhHH
Confidence            3457888999999999999999999998763  34322221          1112222222221        12577788


Q ss_pred             HHHHHhcCHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHHHHHHHH
Q 017811          241 ACLLKLKRYEEAIGQCSLVLGEDENNVKALFRRGKARAELGQTDAAREDFLKAGKFAPEDKSIARELRLLAEHEKAVYKK  320 (365)
Q Consensus       241 ~~~~kl~~~~~A~~~~~~aL~~~p~n~ka~~~~g~a~~~l~~~~~A~~~l~~al~l~P~n~~~~~~l~~l~~~~~~~~~~  320 (365)
                      .+|.+.|++++|...+++. ...| +...|..+..++...|+++.|...+++.++++|++......|..+....++..+.
T Consensus       470 ~~l~r~G~~~eA~~~~~~~-~~~p-~~~~~~~Ll~a~~~~g~~~~a~~~~~~l~~~~p~~~~~y~~L~~~y~~~G~~~~A  547 (697)
T PLN03081        470 ELLGREGLLDEAYAMIRRA-PFKP-TVNMWAALLTACRIHKNLELGRLAAEKLYGMGPEKLNNYVVLLNLYNSSGRQAEA  547 (697)
T ss_pred             HHHHhcCCHHHHHHHHHHC-CCCC-CHHHHHHHHHHHHHcCCcHHHHHHHHHHhCCCCCCCcchHHHHHHHHhCCCHHHH
Confidence            8899999999999887764 3444 5667888889999999999999999999999999877777777776666655443


Q ss_pred             HHHHHhccc
Q 017811          321 QKEIYKGIF  329 (365)
Q Consensus       321 ~k~~y~kmf  329 (365)
                      . +++..|-
T Consensus       548 ~-~v~~~m~  555 (697)
T PLN03081        548 A-KVVETLK  555 (697)
T ss_pred             H-HHHHHHH
Confidence            3 3355553

>PLN03218 maturation of RBCL 1; Provisional

Probab=95.85  E-value=0.21  Score=54.55  Aligned_cols=62  Identities=8%  Similarity=-0.046  Sum_probs=36.8

Q ss_pred             hhhHHHHHHHHhcCHHHHHHHHHHHHhCC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Q 017811          235 CHLNMAACLLKLKRYEEAIGQCSLVLGED-ENNVKALFRRGKARAELGQTDAAREDFLKAGKF  296 (365)
Q Consensus       235 ~~~nla~~~~kl~~~~~A~~~~~~aL~~~-p~n~ka~~~~g~a~~~l~~~~~A~~~l~~al~l  296 (365)
                      .|..+-.+|.+.|++++|+..++...+.+ +.+...|..+..+|...|++++|+..|......
T Consensus       581 TynaLI~ay~k~G~ldeA~elf~~M~e~gi~p~~~tynsLI~ay~k~G~~deAl~lf~eM~~~  643 (1060)
T PLN03218        581 TVGALMKACANAGQVDRAKEVYQMIHEYNIKGTPEVYTIAVNSCSQKGDWDFALSIYDDMKKK  643 (1060)
T ss_pred             HHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHc
Confidence            34555556666666666666666665554 335556666666666666666666666665553

>PLN03218 maturation of RBCL 1; Provisional

Probab=95.79  E-value=0.18  Score=55.15  Aligned_cols=95  Identities=14%  Similarity=-0.015  Sum_probs=66.0

Q ss_pred             hhhhHHHHHHHHhcCHHHHHHHHHHHHhC--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC-CcHHHHHHHHHH
Q 017811          234 PCHLNMAACLLKLKRYEEAIGQCSLVLGE--DENNVKALFRRGKARAELGQTDAAREDFLKAGKFAP-EDKSIARELRLL  310 (365)
Q Consensus       234 ~~~~nla~~~~kl~~~~~A~~~~~~aL~~--~p~n~ka~~~~g~a~~~l~~~~~A~~~l~~al~l~P-~n~~~~~~l~~l  310 (365)
                      ..|..+..+|.+.|++++|+..+......  .| +...|..+..+|...|++++|...|..+.+... -+......|-..
T Consensus       615 ~tynsLI~ay~k~G~~deAl~lf~eM~~~Gv~P-D~~TynsLI~a~~k~G~~eeA~~l~~eM~k~G~~pd~~tynsLI~a  693 (1060)
T PLN03218        615 EVYTIAVNSCSQKGDWDFALSIYDDMKKKGVKP-DEVFFSALVDVAGHAGDLDKAFEILQDARKQGIKLGTVSYSSLMGA  693 (1060)
T ss_pred             HHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Confidence            45777788888888888888888887764  45 467788888888888888888888888877532 234455555555


Q ss_pred             HHHHHHHHHHHHHHHhcccC
Q 017811          311 AEHEKAVYKKQKEIYKGIFG  330 (365)
Q Consensus       311 ~~~~~~~~~~~k~~y~kmf~  330 (365)
                      ..+.++.+ .....|..|..
T Consensus       694 y~k~G~~e-eA~~lf~eM~~  712 (1060)
T PLN03218        694 CSNAKNWK-KALELYEDIKS  712 (1060)
T ss_pred             HHhCCCHH-HHHHHHHHHHH
Confidence            45555544 34556777743

>PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans

Probab=95.74  E-value=0.14  Score=50.90  Aligned_cols=96  Identities=19%  Similarity=0.068  Sum_probs=75.4

Q ss_pred             hhhHHHHHHHHHHHHHhhccchhhhhhhhHHHHHHHhhchhhhHHHHHHHHhcCHHHHHHHHHHHHhCCCCC----HHHH
Q 017811          195 EEKLEEAMQQYEMAIAYMGDDFMFQLFGKYRDMALAVKNPCHLNMAACLLKLKRYEEAIGQCSLVLGEDENN----VKAL  270 (365)
Q Consensus       195 ~~~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~kl~~~~~A~~~~~~aL~~~p~n----~ka~  270 (365)
                      ......|...........|+..-+                 ++..|..+...|+.++|+..+++++.....-    .-++
T Consensus       246 ~~~~~~a~~lL~~~~~~yP~s~lf-----------------l~~~gR~~~~~g~~~~Ai~~~~~a~~~q~~~~Ql~~l~~  308 (468)
T PF10300_consen  246 DVPLEEAEELLEEMLKRYPNSALF-----------------LFFEGRLERLKGNLEEAIESFERAIESQSEWKQLHHLCY  308 (468)
T ss_pred             CCCHHHHHHHHHHHHHhCCCcHHH-----------------HHHHHHHHHHhcCHHHHHHHHHHhccchhhHHhHHHHHH
Confidence            345556666777777777765443                 7889999999999999999999998544332    3489


Q ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHhhCCCcHHHHHHH
Q 017811          271 FRRGKARAELGQTDAAREDFLKAGKFAPEDKSIAREL  307 (365)
Q Consensus       271 ~~~g~a~~~l~~~~~A~~~l~~al~l~P~n~~~~~~l  307 (365)
                      |.+|.+++.+.+|++|...+.+..+.+.-.+.....+
T Consensus       309 ~El~w~~~~~~~w~~A~~~f~~L~~~s~WSka~Y~Y~  345 (468)
T PF10300_consen  309 FELAWCHMFQHDWEEAAEYFLRLLKESKWSKAFYAYL  345 (468)
T ss_pred             HHHHHHHHHHchHHHHHHHHHHHHhccccHHHHHHHH
Confidence            9999999999999999999999999877666555544

In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus.

>KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning]

Probab=95.67  E-value=0.43  Score=46.49  Aligned_cols=129  Identities=14%  Similarity=0.114  Sum_probs=103.6

Q ss_pred             hhhhhhhhhhhHHHHHHHHHHHHHhhccchhhhhhhhHHHHHHHhhchhhhHHHHHHHHhcCHHHHHHHHHHHHhCCCCC
Q 017811          187 MDGNALFKEEKLEEAMQQYEMAIAYMGDDFMFQLFGKYRDMALAVKNPCHLNMAACLLKLKRYEEAIGQCSLVLGEDENN  266 (365)
Q Consensus       187 ~~G~~~~~~~~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~kl~~~~~A~~~~~~aL~~~p~n  266 (365)
                      .-|.=-..++++..|...|.+||.....+                 .++++..|.|-++.+....|...+++|+.+=|.-
T Consensus        78 kYaqwEesq~e~~RARSv~ERALdvd~r~-----------------itLWlkYae~Emknk~vNhARNv~dRAvt~lPRV  140 (677)
T KOG1915|consen   78 KYAQWEESQKEIQRARSVFERALDVDYRN-----------------ITLWLKYAEFEMKNKQVNHARNVWDRAVTILPRV  140 (677)
T ss_pred             HHHHHHHhHHHHHHHHHHHHHHHhccccc-----------------chHHHHHHHHHHhhhhHhHHHHHHHHHHHhcchH
Confidence            34444456788999999999999887554                 4569999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCCC
Q 017811          267 VKALFRRGKARAELGQTDAAREDFLKAGKFAPEDKSIARELRLLAEHEKAVYKKQKEIYKGIFGPRPE  334 (365)
Q Consensus       267 ~ka~~~~g~a~~~l~~~~~A~~~l~~al~l~P~n~~~~~~l~~l~~~~~~~~~~~k~~y~kmf~~~~~  334 (365)
                      -+.+|..-..-..+|+...|...|.+=+...|+... ....-....+.++. +..+..|.+..=..|+
T Consensus       141 dqlWyKY~ymEE~LgNi~gaRqiferW~~w~P~eqa-W~sfI~fElRykei-eraR~IYerfV~~HP~  206 (677)
T KOG1915|consen  141 DQLWYKYIYMEEMLGNIAGARQIFERWMEWEPDEQA-WLSFIKFELRYKEI-ERARSIYERFVLVHPK  206 (677)
T ss_pred             HHHHHHHHHHHHHhcccHHHHHHHHHHHcCCCcHHH-HHHHHHHHHHhhHH-HHHHHHHHHHheeccc
Confidence            999999999999999999999999999999998543 33333333344433 4667889988766653

>KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=95.67  E-value=0.18  Score=45.48  Aligned_cols=69  Identities=25%  Similarity=0.199  Sum_probs=59.4

Q ss_pred             hhhhHHHHHHHHhcCHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHcCCHHHHHHHH-HHHHhhCCCcHH
Q 017811          234 PCHLNMAACLLKLKRYEEAIGQCSLVLGEDENNVKALFRRGKARAELGQTDAAREDF-LKAGKFAPEDKS  302 (365)
Q Consensus       234 ~~~~nla~~~~kl~~~~~A~~~~~~aL~~~p~n~ka~~~~g~a~~~l~~~~~A~~~l-~~al~l~P~n~~  302 (365)
                      .+++..|.|++.+++|++|......+|.-+++++.++-++-.+-..+|.-.++...+ .+....+|+++-
T Consensus       208 ~llnG~Av~~l~~~~~eeAe~lL~eaL~kd~~dpetL~Nliv~a~~~Gkd~~~~~r~l~QLk~~~p~h~~  277 (299)
T KOG3081|consen  208 LLLNGQAVCHLQLGRYEEAESLLEEALDKDAKDPETLANLIVLALHLGKDAEVTERNLSQLKLSHPEHPF  277 (299)
T ss_pred             HHHccHHHHHHHhcCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHhCCChHHHHHHHHHHHhcCCcchH
Confidence            357889999999999999999999999999999999999999999999987776655 455556777653

>PLN03077 Protein ECB2; Provisional

Probab=95.60  E-value=0.16  Score=54.57  Aligned_cols=115  Identities=7%  Similarity=-0.137  Sum_probs=91.0

Q ss_pred             hhhhhhhhHHHHHHHHHHHHHhhccchhhhhhhhHHHHHHHhhchhhhHHHHHHHHhcCHHHHHHHHHHHHhCCCCCHHH
Q 017811          190 NALFKEEKLEEAMQQYEMAIAYMGDDFMFQLFGKYRDMALAVKNPCHLNMAACLLKLKRYEEAIGQCSLVLGEDENNVKA  269 (365)
Q Consensus       190 ~~~~~~~~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~kl~~~~~A~~~~~~aL~~~p~n~ka  269 (365)
                      ..+.+.|++++|...|....+..+-.+.               ...|..+..++.+.|++++|...+++. .+.| ++..
T Consensus       597 ~a~~~~g~v~ea~~~f~~M~~~~gi~P~---------------~~~y~~lv~~l~r~G~~~eA~~~~~~m-~~~p-d~~~  659 (857)
T PLN03077        597 CACSRSGMVTQGLEYFHSMEEKYSITPN---------------LKHYACVVDLLGRAGKLTEAYNFINKM-PITP-DPAV  659 (857)
T ss_pred             HHHhhcChHHHHHHHHHHHHHHhCCCCc---------------hHHHHHHHHHHHhCCCHHHHHHHHHHC-CCCC-CHHH
Confidence            4577889999999999988754332211               224889999999999999999998874 4566 4667


Q ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHHHHHHHHH
Q 017811          270 LFRRGKARAELGQTDAAREDFLKAGKFAPEDKSIARELRLLAEHEKAVYKKQ  321 (365)
Q Consensus       270 ~~~~g~a~~~l~~~~~A~~~l~~al~l~P~n~~~~~~l~~l~~~~~~~~~~~  321 (365)
                      |-.+-.++..-++.+.|....+++++++|++......|..++...++..+..
T Consensus       660 ~~aLl~ac~~~~~~e~~e~~a~~l~~l~p~~~~~y~ll~n~ya~~g~~~~a~  711 (857)
T PLN03077        660 WGALLNACRIHRHVELGELAAQHIFELDPNSVGYYILLCNLYADAGKWDEVA  711 (857)
T ss_pred             HHHHHHHHHHcCChHHHHHHHHHHHhhCCCCcchHHHHHHHHHHCCChHHHH
Confidence            7777778888999999999999999999999999999888877666655433

>KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification]

Probab=95.60  E-value=0.2  Score=54.50  Aligned_cols=122  Identities=18%  Similarity=0.201  Sum_probs=73.3

Q ss_pred             hhHHHHHHHHHHHHHhhccchhhhhhhhHHHHHHHhhchhhhHHHHHHHHhcCHHHHHHHHHHHHhCCCCCHHHHHHHHH
Q 017811          196 EKLEEAMQQYEMAIAYMGDDFMFQLFGKYRDMALAVKNPCHLNMAACLLKLKRYEEAIGQCSLVLGEDENNVKALFRRGK  275 (365)
Q Consensus       196 ~~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~kl~~~~~A~~~~~~aL~~~p~n~ka~~~~g~  275 (365)
                      |.=+...+.|++|-+++..                  ..+|..|.-.|.+-..+++|.+.++.-++--....+.|..+|.
T Consensus      1511 G~eesl~kVFeRAcqycd~------------------~~V~~~L~~iy~k~ek~~~A~ell~~m~KKF~q~~~vW~~y~~ 1572 (1710)
T KOG1070|consen 1511 GTEESLKKVFERACQYCDA------------------YTVHLKLLGIYEKSEKNDEADELLRLMLKKFGQTRKVWIMYAD 1572 (1710)
T ss_pred             CcHHHHHHHHHHHHHhcch------------------HHHHHHHHHHHHHhhcchhHHHHHHHHHHHhcchhhHHHHHHH
Confidence            3334455667777666543                  2346667777777777777777777766655566667777777


Q ss_pred             HHHHcCCHHHHHHHHHHHHhhCCC--cHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCCCcc
Q 017811          276 ARAELGQTDAAREDFLKAGKFAPE--DKSIARELRLLAEHEKAVYKKQKEIYKGIFGPRPEPK  336 (365)
Q Consensus       276 a~~~l~~~~~A~~~l~~al~l~P~--n~~~~~~l~~l~~~~~~~~~~~k~~y~kmf~~~~~~~  336 (365)
                      .++..++-+.|...+++||+.-|.  +.++....+.+.-+..+ .+.-|..|...+...|.-+
T Consensus      1573 fLl~~ne~~aa~~lL~rAL~~lPk~eHv~~IskfAqLEFk~GD-aeRGRtlfEgll~ayPKRt 1634 (1710)
T KOG1070|consen 1573 FLLRQNEAEAARELLKRALKSLPKQEHVEFISKFAQLEFKYGD-AERGRTLFEGLLSAYPKRT 1634 (1710)
T ss_pred             HHhcccHHHHHHHHHHHHHhhcchhhhHHHHHHHHHHHhhcCC-chhhHHHHHHHHhhCccch
Confidence            777777777777777777777776  44444444444333332 2233455666665555433

>COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism]

Probab=95.57  E-value=0.11  Score=49.29  Aligned_cols=92  Identities=18%  Similarity=0.057  Sum_probs=58.5

Q ss_pred             hhhhhhhhhhHHHHHHHHHHHHHhhccchhhhhhhhHHHHHHHhhchhhhHHHHHHHHhcCHHHHHHHHHHHHhCCCCCH
Q 017811          188 DGNALFKEEKLEEAMQQYEMAIAYMGDDFMFQLFGKYRDMALAVKNPCHLNMAACLLKLKRYEEAIGQCSLVLGEDENNV  267 (365)
Q Consensus       188 ~G~~~~~~~~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~kl~~~~~A~~~~~~aL~~~p~n~  267 (365)
                      .+..+...|++++|.+.-..+++..-+..                   +..+ .-..+.+++..=+...++.++..|+++
T Consensus       269 ~a~~li~l~~~~~A~~~i~~~Lk~~~D~~-------------------L~~~-~~~l~~~d~~~l~k~~e~~l~~h~~~p  328 (400)
T COG3071         269 YAERLIRLGDHDEAQEIIEDALKRQWDPR-------------------LCRL-IPRLRPGDPEPLIKAAEKWLKQHPEDP  328 (400)
T ss_pred             HHHHHHHcCChHHHHHHHHHHHHhccChh-------------------HHHH-HhhcCCCCchHHHHHHHHHHHhCCCCh
Confidence            45567788999999999999988754321                   1111 122345566666666666666666666


Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC
Q 017811          268 KALFRRGKARAELGQTDAAREDFLKAGKFAPE  299 (365)
Q Consensus       268 ka~~~~g~a~~~l~~~~~A~~~l~~al~l~P~  299 (365)
                      -.++.+|+.++..+.|.+|...|+.|++..|+
T Consensus       329 ~L~~tLG~L~~k~~~w~kA~~~leaAl~~~~s  360 (400)
T COG3071         329 LLLSTLGRLALKNKLWGKASEALEAALKLRPS  360 (400)
T ss_pred             hHHHHHHHHHHHhhHHHHHHHHHHHHHhcCCC
Confidence            66666666666666666666666666666655

>PRK04841 transcriptional regulator MalT; Provisional

Probab=95.50  E-value=0.11  Score=56.06  Aligned_cols=97  Identities=14%  Similarity=0.072  Sum_probs=77.6

Q ss_pred             hhhhhhhhhhHHHHHHHHHHHHHhhccchhhhhhhhHHHHHHHhhchhhhHHHHHHHHhcCHHHHHHHHHHHHhCCCC--
Q 017811          188 DGNALFKEEKLEEAMQQYEMAIAYMGDDFMFQLFGKYRDMALAVKNPCHLNMAACLLKLKRYEEAIGQCSLVLGEDEN--  265 (365)
Q Consensus       188 ~G~~~~~~~~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~kl~~~~~A~~~~~~aL~~~p~--  265 (365)
                      .|..++..|++..|...+.+++...+.....            ....++.++|.++...|++++|...+.+++.....  
T Consensus       458 ~a~~~~~~g~~~~A~~~~~~al~~~~~~~~~------------~~~~a~~~lg~~~~~~G~~~~A~~~~~~al~~~~~~g  525 (903)
T PRK04841        458 RAQVAINDGDPEEAERLAELALAELPLTWYY------------SRIVATSVLGEVHHCKGELARALAMMQQTEQMARQHD  525 (903)
T ss_pred             HHHHHHhCCCHHHHHHHHHHHHhcCCCccHH------------HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhc
Confidence            4567788999999999999999865542110            11234678999999999999999999999865321  


Q ss_pred             ----CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Q 017811          266 ----NVKALFRRGKARAELGQTDAAREDFLKAGKF  296 (365)
Q Consensus       266 ----n~ka~~~~g~a~~~l~~~~~A~~~l~~al~l  296 (365)
                          -..++..+|.++...|++++|...+.+++.+
T Consensus       526 ~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~  560 (903)
T PRK04841        526 VYHYALWSLLQQSEILFAQGFLQAAYETQEKAFQL  560 (903)
T ss_pred             chHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
Confidence                1357788999999999999999999999986

>PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome

Probab=95.47  E-value=0.23  Score=42.61  Aligned_cols=101  Identities=17%  Similarity=0.055  Sum_probs=74.0

Q ss_pred             HHHhhhhhhhhhhhhhHHHHHHHHHHHHHhhccchhhhhhhhHHHHHHHhhchhhhHHHHHHHHhcCHHHHHHHHHHHHh
Q 017811          182 ADRRKMDGNALFKEEKLEEAMQQYEMAIAYMGDDFMFQLFGKYRDMALAVKNPCHLNMAACLLKLKRYEEAIGQCSLVLG  261 (365)
Q Consensus       182 a~~~k~~G~~~~~~~~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~kl~~~~~A~~~~~~aL~  261 (365)
                      -..+...|+.|.+.|+++.|++.|.++.......              .-...+++++-.+.+-.++|..+..+..++-.
T Consensus        36 r~~~~~l~~~~~~~Gd~~~A~k~y~~~~~~~~~~--------------~~~id~~l~~irv~i~~~d~~~v~~~i~ka~~  101 (177)
T PF10602_consen   36 RMALEDLADHYCKIGDLEEALKAYSRARDYCTSP--------------GHKIDMCLNVIRVAIFFGDWSHVEKYIEKAES  101 (177)
T ss_pred             HHHHHHHHHHHHHhhhHHHHHHHHHHHhhhcCCH--------------HHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence            4467788999999999999999999988776442              12345688888888899999999999888754


Q ss_pred             CC--CCCH--H--HHHHHHHHHHHcCCHHHHHHHHHHHHhh
Q 017811          262 ED--ENNV--K--ALFRRGKARAELGQTDAAREDFLKAGKF  296 (365)
Q Consensus       262 ~~--p~n~--k--a~~~~g~a~~~l~~~~~A~~~l~~al~l  296 (365)
                      +-  +.++  +  .....|.+++..++|..|...|-.++.-
T Consensus       102 ~~~~~~d~~~~nrlk~~~gL~~l~~r~f~~AA~~fl~~~~t  142 (177)
T PF10602_consen  102 LIEKGGDWERRNRLKVYEGLANLAQRDFKEAAELFLDSLST  142 (177)
T ss_pred             HHhccchHHHHHHHHHHHHHHHHHhchHHHHHHHHHccCcC
Confidence            32  2222  2  2334566777888999988888766543

This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome.

>KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport]

Probab=95.21  E-value=0.22  Score=44.41  Aligned_cols=132  Identities=17%  Similarity=0.086  Sum_probs=84.2

Q ss_pred             hhhhhhhhhhHHHHHHHHHHHHHhhccchhhhhhhhHHHHHHHhhchhhhHHHHHHHHhcCHHHHHHHHHHH----HhCC
Q 017811          188 DGNALFKEEKLEEAMQQYEMAIAYMGDDFMFQLFGKYRDMALAVKNPCHLNMAACLLKLKRYEEAIGQCSLV----LGED  263 (365)
Q Consensus       188 ~G~~~~~~~~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~kl~~~~~A~~~~~~a----L~~~  263 (365)
                      ++......-+.++|+..|++++.+...+..           ..+...++-..+..+.+++.|.+|-..+.+-    +..+
T Consensus       116 KAak~lenv~Pd~AlqlYqralavve~~dr-----------~~ma~el~gk~sr~lVrl~kf~Eaa~a~lKe~~~~~~~~  184 (308)
T KOG1585|consen  116 KAAKALENVKPDDALQLYQRALAVVEEDDR-----------DQMAFELYGKCSRVLVRLEKFTEAATAFLKEGVAADKCD  184 (308)
T ss_pred             HHHHHhhcCCHHHHHHHHHHHHHHHhccch-----------HHHHHHHHHHhhhHhhhhHHhhHHHHHHHHhhhHHHHHh
Confidence            444555667778888888888887754321           1223445788899999999999998877663    3333


Q ss_pred             --CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCC
Q 017811          264 --ENNVKALFRRGKARAELGQTDAAREDFLKAGKFAPEDKSIARELRLLAEHEKAVYKKQKEIYKGIFGPR  332 (365)
Q Consensus       264 --p~n~ka~~~~g~a~~~l~~~~~A~~~l~~al~l~P~n~~~~~~l~~l~~~~~~~~~~~k~~y~kmf~~~  332 (365)
                        |.--|++.-.-.+|+...+|..|...++.+.++..-+..  ..-+.|...+..+++.....+++|++.+
T Consensus       185 ~y~~~~k~~va~ilv~L~~~Dyv~aekc~r~~~qip~f~~s--ed~r~lenLL~ayd~gD~E~~~kvl~sp  253 (308)
T KOG1585|consen  185 AYNSQCKAYVAAILVYLYAHDYVQAEKCYRDCSQIPAFLKS--EDSRSLENLLTAYDEGDIEEIKKVLSSP  253 (308)
T ss_pred             hcccHHHHHHHHHHHHhhHHHHHHHHHHhcchhcCccccCh--HHHHHHHHHHHHhccCCHHHHHHHHcCh
Confidence              444566666667777778999999999998876432211  1122333445555555555566665443

>COG3947 Response regulator containing CheY-like receiver and SARP domains [Signal transduction mechanisms]

Probab=95.15  E-value=0.19  Score=45.86  Aligned_cols=73  Identities=16%  Similarity=0.015  Sum_probs=62.9

Q ss_pred             hhHHHHHHHhhchhhhHHHHHHHHhcCHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 017811          222 GKYRDMALAVKNPCHLNMAACLLKLKRYEEAIGQCSLVLGEDENNVKALFRRGKARAELGQTDAAREDFLKAG  294 (365)
Q Consensus       222 ~~~~~~~~~~~~~~~~nla~~~~kl~~~~~A~~~~~~aL~~~p~n~ka~~~~g~a~~~l~~~~~A~~~l~~al  294 (365)
                      +..++-+..+..+++.-.|..|...|.+.+|+..|+++++++|-+...+.-+-+.|..+|+--.|.+.|.+.-
T Consensus       268 edererle~ly~kllgkva~~yle~g~~neAi~l~qr~ltldpL~e~~nk~lm~~la~~gD~is~~khyerya  340 (361)
T COG3947         268 EDERERLEQLYMKLLGKVARAYLEAGKPNEAIQLHQRALTLDPLSEQDNKGLMASLATLGDEISAIKHYERYA  340 (361)
T ss_pred             cchHHHHHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHhhcChhhhHHHHHHHHHHHHhccchhhhhHHHHHH
Confidence            3445666777778888889999999999999999999999999999999999999999999777777776543

>PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A

Probab=95.14  E-value=0.025  Score=35.34  Aligned_cols=28  Identities=29%  Similarity=0.222  Sum_probs=20.8

Q ss_pred             hhhHHHHHHHHhcCHHHHHHHHHHHHhC
Q 017811          235 CHLNMAACLLKLKRYEEAIGQCSLVLGE  262 (365)
Q Consensus       235 ~~~nla~~~~kl~~~~~A~~~~~~aL~~  262 (365)
                      ++.|+|.+|..+|+|++|+..+.+++.+
T Consensus         4 ~~~~la~~~~~~g~~~~A~~~~~~al~~   31 (42)
T PF13374_consen    4 ALNNLANAYRAQGRYEEALELLEEALEI   31 (42)
T ss_dssp             HHHHHHHHHHHCT-HHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhhhhcchhhHHHHHHHHH
Confidence            4778888888888888888888877754

>PF10579 Rapsyn_N: Rapsyn N-terminal myristoylation and linker region; InterPro: IPR019568 Neuromuscular junction formation relies upon the clustering of acetylcholine receptors and other proteins in the muscle membrane

Probab=95.08  E-value=0.13  Score=37.41  Aligned_cols=68  Identities=15%  Similarity=0.208  Sum_probs=55.6

Q ss_pred             HHHHHhhhhhhhhhhhhhHHHHHHHHHHHHHhhccchhhhhhhhHHHHHHHhhchhhhHHHHHHHHhcCHHHHHHHHHHH
Q 017811          180 GAADRRKMDGNALFKEEKLEEAMQQYEMAIAYMGDDFMFQLFGKYRDMALAVKNPCHLNMAACLLKLKRYEEAIGQCSLV  259 (365)
Q Consensus       180 ~~a~~~k~~G~~~~~~~~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~kl~~~~~A~~~~~~a  259 (365)
                      ..+..+.+.|..++.+.+..+|+..++++++..++...              +-.++--++.+|...|+|.+++.+...=
T Consensus         4 ~~ak~~ie~GlkLY~~~~~~~Al~~W~~aL~k~~~~~~--------------rf~~lG~l~qA~~e~Gkyr~~L~fA~~Q   69 (80)
T PF10579_consen    4 DQAKQQIEKGLKLYHQNETQQALQKWRKALEKITDRED--------------RFRVLGYLIQAHMEWGKYREMLAFALQQ   69 (80)
T ss_pred             HHHHHHHHHHHHHhccchHHHHHHHHHHHHhhcCChHH--------------HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            35778889999999999999999999999999877422              2234677888999999999999987765


Q ss_pred             Hh
Q 017811          260 LG  261 (365)
Q Consensus       260 L~  261 (365)
                      ++
T Consensus        70 ~~   71 (80)
T PF10579_consen   70 LE   71 (80)
T ss_pred             HH
Confidence            54

Rapsyn is a peripheral membrane protein that is selectively concentrated at the neuromuscular junction and is essential for the formation of synaptic acetylcholine receptor aggregates. Acetylcholine receptors fail to aggregate beneath nerve terminals in mice where rapsyn has been knocked out. The N-terminal six amino acids of rapsyn are its myristoylation site, and myristoylation is necessary for the targeting of the protein to the membrane []. ; GO: 0008270 zinc ion binding, 0033130 acetylcholine receptor binding, 0007268 synaptic transmission, 0005856 cytoskeleton, 0030054 cell junction, 0045211 postsynaptic membrane

>KOG0686 consensus COP9 signalosome, subunit CSN1 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]

Probab=95.05  E-value=0.32  Score=46.40  Aligned_cols=138  Identities=20%  Similarity=0.174  Sum_probs=97.4

Q ss_pred             HhhhhhhhhhhhhhHHHHHHHHHHHHHhhccchhhhhhhhHHHHHHHhhchhhhHHHHHHHHhcCHHHHHHHHHHHHhCC
Q 017811          184 RRKMDGNALFKEEKLEEAMQQYEMAIAYMGDDFMFQLFGKYRDMALAVKNPCHLNMAACLLKLKRYEEAIGQCSLVLGED  263 (365)
Q Consensus       184 ~~k~~G~~~~~~~~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~kl~~~~~A~~~~~~aL~~~  263 (365)
                      .+...|..|...|+++.|++.|.++-.+.....-              .+..+.|+-.+-+-+++|.....+-.+|...-
T Consensus       152 a~~Dl~dhy~~cG~l~~Alr~YsR~RdYCTs~kh--------------vInm~ln~i~VSI~~~nw~hv~sy~~~A~st~  217 (466)
T KOG0686|consen  152 ALEDLGDHYLDCGQLDNALRCYSRARDYCTSAKH--------------VINMCLNLILVSIYMGNWGHVLSYISKAESTP  217 (466)
T ss_pred             HHHHHHHHHHHhccHHHHHhhhhhhhhhhcchHH--------------HHHHHHHHHHHHHhhcchhhhhhHHHHHHhCc
Confidence            3456788899999999999999998777654211              24458888888889999999999988887652


Q ss_pred             --------CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh--------hCCCcHHHHHHHHHHHHHHH---HHHHHHHHH
Q 017811          264 --------ENNVKALFRRGKARAELGQTDAAREDFLKAGK--------FAPEDKSIARELRLLAEHEK---AVYKKQKEI  324 (365)
Q Consensus       264 --------p~n~ka~~~~g~a~~~l~~~~~A~~~l~~al~--------l~P~n~~~~~~l~~l~~~~~---~~~~~~k~~  324 (365)
                              .-.++...-.|.+.+.+++|..|...|-.+..        +.|.|..+.-.|-.+..--+   +.+-.....
T Consensus       218 ~~~~~~~q~v~~kl~C~agLa~L~lkkyk~aa~~fL~~~~~~~d~~~ivtpsdv~iYggLcALAtfdr~~Lk~~vi~n~~  297 (466)
T KOG0686|consen  218 DANENLAQEVPAKLKCAAGLANLLLKKYKSAAKYFLLAEFDHCDYPEIVTPSDVAIYGGLCALATFDRQDLKLNVIKNES  297 (466)
T ss_pred             hhhhhHHHhcCcchHHHHHHHHHHHHHHHHHHHHHHhCCCCccCccceecchhhHHHHhhHhhccCCHHHHHHHHHcchh
Confidence                    12456778889999999999999988876643        24556665555544432111   112234556


Q ss_pred             HhcccCCCCCc
Q 017811          325 YKGIFGPRPEP  335 (365)
Q Consensus       325 y~kmf~~~~~~  335 (365)
                      |+..|+..|+.
T Consensus       298 Fk~flel~Pql  308 (466)
T KOG0686|consen  298 FKLFLELEPQL  308 (466)
T ss_pred             hhhHHhcChHH
Confidence            88888888843

>KOG2471 consensus TPR repeat-containing protein [General function prediction only]

Probab=95.02  E-value=0.063  Score=52.19  Aligned_cols=75  Identities=16%  Similarity=0.081  Sum_probs=65.8

Q ss_pred             hhHHHHHHHHhcCHHHHHHHHHHHHh---------CCC---------CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC
Q 017811          236 HLNMAACLLKLKRYEEAIGQCSLVLG---------EDE---------NNVKALFRRGKARAELGQTDAAREDFLKAGKFA  297 (365)
Q Consensus       236 ~~nla~~~~kl~~~~~A~~~~~~aL~---------~~p---------~n~ka~~~~g~a~~~l~~~~~A~~~l~~al~l~  297 (365)
                      ++|+|.++++++.|..++.+|.+||.         +.|         .....+|+.|..|++.|+.-.|..+|.++....
T Consensus       286 ~NNlGcIh~~~~~y~~~~~~F~kAL~N~c~qL~~g~~~~~~~tls~nks~eilYNcG~~~Lh~grPl~AfqCf~~av~vf  365 (696)
T KOG2471|consen  286 NNNLGCIHYQLGCYQASSVLFLKALRNSCSQLRNGLKPAKTFTLSQNKSMEILYNCGLLYLHSGRPLLAFQCFQKAVHVF  365 (696)
T ss_pred             ecCcceEeeehhhHHHHHHHHHHHHHHHHHHHhccCCCCcceehhcccchhhHHhhhHHHHhcCCcHHHHHHHHHHHHHH
Confidence            58999999999999999999999995         122         345689999999999999999999999999999


Q ss_pred             CCcHHHHHHHHHH
Q 017811          298 PEDKSIARELRLL  310 (365)
Q Consensus       298 P~n~~~~~~l~~l  310 (365)
                      -.|+.++-.+..|
T Consensus       366 h~nPrlWLRlAEc  378 (696)
T KOG2471|consen  366 HRNPRLWLRLAEC  378 (696)
T ss_pred             hcCcHHHHHHHHH
Confidence            9999988777765

>PF04781 DUF627: Protein of unknown function (DUF627); InterPro: IPR006866 This domain represents the N-terminal region of several plant proteins of unknown function

Probab=95.01  E-value=0.22  Score=38.87  Aligned_cols=102  Identities=12%  Similarity=0.082  Sum_probs=67.3

Q ss_pred             hhhhhhhhhhHHHHHHHHHHHHHhhccchhhhhhhhHHHHHHHhhchhhhHHHHHH----HHhcCHHHHHHHHHHHHhCC
Q 017811          188 DGNALFKEEKLEEAMQQYEMAIAYMGDDFMFQLFGKYRDMALAVKNPCHLNMAACL----LKLKRYEEAIGQCSLVLGED  263 (365)
Q Consensus       188 ~G~~~~~~~~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~----~kl~~~~~A~~~~~~aL~~~  263 (365)
                      .+..+|.+|++.+|++.-+..+...+.+...       -....+...++..+|..-    .+.-=.-.+++.+.++..+.
T Consensus         2 ~A~~~~~rGnhiKAL~iied~i~~h~~~~~~-------~~lh~~QG~if~~lA~~ten~d~k~~yLl~sve~~s~a~~Ls   74 (111)
T PF04781_consen    2 KAKDYFARGNHIKALEIIEDLISRHGEDESS-------WLLHRLQGTIFYKLAKKTENPDVKFRYLLGSVECFSRAVELS   74 (111)
T ss_pred             hHHHHHHccCHHHHHHHHHHHHHHccCCCch-------HHHHHHHhHHHHHHHHhccCchHHHHHHHHhHHHHHHHhccC
Confidence            5678899999999999999999887764321       011112222222222111    01111446778888888888


Q ss_pred             CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Q 017811          264 ENNVKALFRRGKARAELGQTDAAREDFLKAGKF  296 (365)
Q Consensus       264 p~n~ka~~~~g~a~~~l~~~~~A~~~l~~al~l  296 (365)
                      |..+..+|.+|+=+.....|.++...-+++|.+
T Consensus        75 p~~A~~L~~la~~l~s~~~Ykk~v~kak~~Lsv  107 (111)
T PF04781_consen   75 PDSAHSLFELASQLGSVKYYKKAVKKAKRGLSV  107 (111)
T ss_pred             hhHHHHHHHHHHHhhhHHHHHHHHHHHHHHhcc
Confidence            888888888888777777788888777777765

>KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification]

Probab=94.85  E-value=0.7  Score=50.50  Aligned_cols=115  Identities=12%  Similarity=0.099  Sum_probs=88.3

Q ss_pred             chhhhHHHHHHHHhcCHHHHHHHHHHHHhCCCC--CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCcHHHHHHHHHH
Q 017811          233 NPCHLNMAACLLKLKRYEEAIGQCSLVLGEDEN--NVKALFRRGKARAELGQTDAAREDFLKAGKFAPEDKSIARELRLL  310 (365)
Q Consensus       233 ~~~~~nla~~~~kl~~~~~A~~~~~~aL~~~p~--n~ka~~~~g~a~~~l~~~~~A~~~l~~al~l~P~n~~~~~~l~~l  310 (365)
                      .++|...|..+++.++-++|.....+||..-|.  ++...-..|+.-++.|+-+.+...|+-.+.-+|.-.+++.-+-..
T Consensus      1564 ~~vW~~y~~fLl~~ne~~aa~~lL~rAL~~lPk~eHv~~IskfAqLEFk~GDaeRGRtlfEgll~ayPKRtDlW~VYid~ 1643 (1710)
T KOG1070|consen 1564 RKVWIMYADFLLRQNEAEAARELLKRALKSLPKQEHVEFISKFAQLEFKYGDAERGRTLFEGLLSAYPKRTDLWSVYIDM 1643 (1710)
T ss_pred             hhHHHHHHHHHhcccHHHHHHHHHHHHHhhcchhhhHHHHHHHHHHHhhcCCchhhHHHHHHHHhhCccchhHHHHHHHH
Confidence            346888888888888888899999999988887  788888889999999999999999999999999888888766554


Q ss_pred             HHHHHHHHHHHHHHHhcccCCCCCccccchhHHHHHHH
Q 017811          311 AEHEKAVYKKQKEIYKGIFGPRPEPKQKKNWLIIFWQL  348 (365)
Q Consensus       311 ~~~~~~~~~~~k~~y~kmf~~~~~~~~~~~~~~~~~~~  348 (365)
                      .. .....+..|.+|++.....-...+.+-+.+.+++|
T Consensus      1644 ei-k~~~~~~vR~lfeRvi~l~l~~kkmKfffKkwLey 1680 (1710)
T KOG1070|consen 1644 EI-KHGDIKYVRDLFERVIELKLSIKKMKFFFKKWLEY 1680 (1710)
T ss_pred             HH-ccCCHHHHHHHHHHHHhcCCChhHhHHHHHHHHHH
Confidence            22 22334567888888877766655555555555554

>PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins

Probab=94.75  E-value=0.4  Score=44.28  Aligned_cols=106  Identities=13%  Similarity=0.090  Sum_probs=80.4

Q ss_pred             hhHHHHHHHHhcCHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHH-cCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHH
Q 017811          236 HLNMAACLLKLKRYEEAIGQCSLVLGEDENNVKALFRRGKARAE-LGQTDAAREDFLKAGKFAPEDKSIARELRLLAEHE  314 (365)
Q Consensus       236 ~~nla~~~~kl~~~~~A~~~~~~aL~~~p~n~ka~~~~g~a~~~-l~~~~~A~~~l~~al~l~P~n~~~~~~l~~l~~~~  314 (365)
                      |..+.....+.+..+.|...+.+|+...+.+...|...|..-+. .++.+-|...|+.+++..|.+..++...-......
T Consensus         4 ~i~~m~~~~r~~g~~~aR~vF~~a~~~~~~~~~vy~~~A~~E~~~~~d~~~A~~Ife~glk~f~~~~~~~~~Y~~~l~~~   83 (280)
T PF05843_consen    4 WIQYMRFMRRTEGIEAARKVFKRARKDKRCTYHVYVAYALMEYYCNKDPKRARKIFERGLKKFPSDPDFWLEYLDFLIKL   83 (280)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHCCCCS-THHHHHHHHHHHHTCS-HHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHhCChHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHh
Confidence            55566666777779999999999998777788999999999777 45666699999999999999988877765554555


Q ss_pred             HHHHHHHHHHHhcccCCCCCcc-ccchhH
Q 017811          315 KAVYKKQKEIYKGIFGPRPEPK-QKKNWL  342 (365)
Q Consensus       315 ~~~~~~~k~~y~kmf~~~~~~~-~~~~~~  342 (365)
                      . ...+.|.+|++.+...+... .+..|.
T Consensus        84 ~-d~~~aR~lfer~i~~l~~~~~~~~iw~  111 (280)
T PF05843_consen   84 N-DINNARALFERAISSLPKEKQSKKIWK  111 (280)
T ss_dssp             T--HHHHHHHHHHHCCTSSCHHHCHHHHH
T ss_pred             C-cHHHHHHHHHHHHHhcCchhHHHHHHH
Confidence            4 45688999999999977666 344443

The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B.

>PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases

Probab=94.74  E-value=0.37  Score=45.52  Aligned_cols=114  Identities=18%  Similarity=0.138  Sum_probs=75.7

Q ss_pred             hhhhhhhhhhhhHHHHHHHHHHHHH-hhccchhhh----h------------hhhHHHHHHHhhchhhhHHHHHHHHh--
Q 017811          186 KMDGNALFKEEKLEEAMQQYEMAIA-YMGDDFMFQ----L------------FGKYRDMALAVKNPCHLNMAACLLKL--  246 (365)
Q Consensus       186 k~~G~~~~~~~~y~~A~~~y~~al~-~~~~~~~~~----~------------~~~~~~~~~~~~~~~~~nla~~~~kl--  246 (365)
                      .+.+..++..|+..+|+......+. .........    .            ..........+...+++-+|.-...+  
T Consensus       188 ~e~akllw~~g~~~~Ai~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~l~~a~w~~~~~~  267 (352)
T PF02259_consen  188 LEYAKLLWAQGEQEEAIQKLRELLKCRLSKNIDSISNAELKSGLLESLEVISSTNLDKESKELKAKAFLLLAKWLDELYS  267 (352)
T ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHHHHhhhccccccHHHHhhccccccccccccchhhhhHHHHHHHHHHHHHHHHhhcc
Confidence            3455556666666777777777766 222110000    0            00012223445567788888888777  


Q ss_pred             ----cCHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHcCCH-----------------HHHHHHHHHHHhhCCC
Q 017811          247 ----KRYEEAIGQCSLVLGEDENNVKALFRRGKARAELGQT-----------------DAAREDFLKAGKFAPE  299 (365)
Q Consensus       247 ----~~~~~A~~~~~~aL~~~p~n~ka~~~~g~a~~~l~~~-----------------~~A~~~l~~al~l~P~  299 (365)
                          +.+++++..|..++.++|.+.++|+..|..+..+=+.                 ..|+..|-+++.+.++
T Consensus       268 ~~~~~~~~~~~~~~~~a~~~~~~~~k~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~ai~~y~~al~~~~~  341 (352)
T PF02259_consen  268 KLSSESSDEILKYYKEATKLDPSWEKAWHSWALFNDKLLESDPREKEESSQEDRSEYLEQAIEGYLKALSLGSK  341 (352)
T ss_pred             ccccccHHHHHHHHHHHHHhChhHHHHHHHHHHHHHHHHHhhhhcccccchhHHHHHHHHHHHHHHHHHhhCCC
Confidence                8899999999999999999999999999877765322                 3377777888887776

Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding

>KOG2471 consensus TPR repeat-containing protein [General function prediction only]

Probab=94.74  E-value=0.037  Score=53.71  Aligned_cols=95  Identities=9%  Similarity=-0.077  Sum_probs=69.7

Q ss_pred             hhhhhhhhhhhhhHHHHHHHHHHHHH-hhccchhhhhhhhH-HHHHHHhhchhhhHHHHHHHHhcCHHHHHHHHHHHHhC
Q 017811          185 RKMDGNALFKEEKLEEAMQQYEMAIA-YMGDDFMFQLFGKY-RDMALAVKNPCHLNMAACLLKLKRYEEAIGQCSLVLGE  262 (365)
Q Consensus       185 ~k~~G~~~~~~~~y~~A~~~y~~al~-~~~~~~~~~~~~~~-~~~~~~~~~~~~~nla~~~~kl~~~~~A~~~~~~aL~~  262 (365)
                      +.+.|-.+|..+.|..++.+|.+|++ .... ...+..+.. ......-...+++|.|..|+..|++-.|..++.++...
T Consensus       286 ~NNlGcIh~~~~~y~~~~~~F~kAL~N~c~q-L~~g~~~~~~~tls~nks~eilYNcG~~~Lh~grPl~AfqCf~~av~v  364 (696)
T KOG2471|consen  286 NNNLGCIHYQLGCYQASSVLFLKALRNSCSQ-LRNGLKPAKTFTLSQNKSMEILYNCGLLYLHSGRPLLAFQCFQKAVHV  364 (696)
T ss_pred             ecCcceEeeehhhHHHHHHHHHHHHHHHHHH-HhccCCCCcceehhcccchhhHHhhhHHHHhcCCcHHHHHHHHHHHHH
Confidence            45677789999999999999999996 2211 000000000 00011112346899999999999999999999999999


Q ss_pred             CCCCHHHHHHHHHHHHHc
Q 017811          263 DENNVKALFRRGKARAEL  280 (365)
Q Consensus       263 ~p~n~ka~~~~g~a~~~l  280 (365)
                      .-.|+..|.|+|.|.++-
T Consensus       365 fh~nPrlWLRlAEcCima  382 (696)
T KOG2471|consen  365 FHRNPRLWLRLAECCIMA  382 (696)
T ss_pred             HhcCcHHHHHHHHHHHHH
Confidence            999999999999998764

>COG2976 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=94.66  E-value=1.1  Score=38.74  Aligned_cols=142  Identities=17%  Similarity=0.180  Sum_probs=88.4

Q ss_pred             hhhhhhhh---hHHHHHHHHHHHHHhhccchhhhhhhhHHHHHHHh-----hchhhhHHHHHHHHhcCHHHHHHHHHHHH
Q 017811          189 GNALFKEE---KLEEAMQQYEMAIAYMGDDFMFQLFGKYRDMALAV-----KNPCHLNMAACLLKLKRYEEAIGQCSLVL  260 (365)
Q Consensus       189 G~~~~~~~---~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~nla~~~~kl~~~~~A~~~~~~aL  260 (365)
                      |-.|+...   ....|...|.+++........ .............     ..-..+.+|..+...+++++|+..++.+|
T Consensus        38 GW~ywq~~q~~q~~~AS~~Y~~~i~~~~ak~~-~~~~~~ekf~~~n~~t~Ya~laaL~lAk~~ve~~~~d~A~aqL~~~l  116 (207)
T COG2976          38 GWRYWQSHQVEQAQEASAQYQNAIKAVQAKKP-KSIAAAEKFVQANGKTIYAVLAALELAKAEVEANNLDKAEAQLKQAL  116 (207)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCc-hhHHHHHHHHhhccccHHHHHHHHHHHHHHHhhccHHHHHHHHHHHH
Confidence            44455444   444888999999988743221 1111111111111     11234677888999999999999999999


Q ss_pred             hCCC-CCHH--HHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCcHHHHHHH-HHHHHHHHHHHHHHHHHHhcccCCCCC
Q 017811          261 GEDE-NNVK--ALFRRGKARAELGQTDAAREDFLKAGKFAPEDKSIAREL-RLLAEHEKAVYKKQKEIYKGIFGPRPE  334 (365)
Q Consensus       261 ~~~p-~n~k--a~~~~g~a~~~l~~~~~A~~~l~~al~l~P~n~~~~~~l-~~l~~~~~~~~~~~k~~y~kmf~~~~~  334 (365)
                      ..-. .+.+  +-.|+|.++..++.+|+|+..+.....  ++-.....++ +.+...+++. ...+..|.+.+....+
T Consensus       117 ~~t~De~lk~l~~lRLArvq~q~~k~D~AL~~L~t~~~--~~w~~~~~elrGDill~kg~k-~~Ar~ay~kAl~~~~s  191 (207)
T COG2976         117 AQTKDENLKALAALRLARVQLQQKKADAALKTLDTIKE--ESWAAIVAELRGDILLAKGDK-QEARAAYEKALESDAS  191 (207)
T ss_pred             ccchhHHHHHHHHHHHHHHHHHhhhHHHHHHHHhcccc--ccHHHHHHHHhhhHHHHcCch-HHHHHHHHHHHHccCC
Confidence            6443 3445  557999999999999999998875532  2223333333 4554444444 4556668888777643

>PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length

Probab=94.64  E-value=0.45  Score=46.07  Aligned_cols=134  Identities=17%  Similarity=0.152  Sum_probs=89.8

Q ss_pred             HHHHHHHhhhhhhhhhhhhh-HHHHHHHHHHHHHhhccchhhhhh------hhHHHH---------------HHHhh---
Q 017811          178 RIGAADRRKMDGNALFKEEK-LEEAMQQYEMAIAYMGDDFMFQLF------GKYRDM---------------ALAVK---  232 (365)
Q Consensus       178 ~~~~a~~~k~~G~~~~~~~~-y~~A~~~y~~al~~~~~~~~~~~~------~~~~~~---------------~~~~~---  232 (365)
                      +-+.+..+...+..+++.|. -+.|++..+.++...+.+..-...      ..+.+.               +.+..   
T Consensus       375 rqQLvh~L~~~Ak~lW~~g~~dekalnLLk~il~ft~yD~ec~n~v~~fvKq~Y~qaLs~~~~~rLlkLe~fi~e~gl~~  454 (549)
T PF07079_consen  375 RQQLVHYLVFGAKHLWEIGQCDEKALNLLKLILQFTNYDIECENIVFLFVKQAYKQALSMHAIPRLLKLEDFITEVGLTP  454 (549)
T ss_pred             HHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhcCCCc
Confidence            34455566667777777777 667888888888777765431110      000000               00000   


Q ss_pred             -------chhhhHHHHHHHHhcCHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC----cH
Q 017811          233 -------NPCHLNMAACLLKLKRYEEAIGQCSLVLGEDENNVKALFRRGKARAELGQTDAAREDFLKAGKFAPE----DK  301 (365)
Q Consensus       233 -------~~~~~nla~~~~kl~~~~~A~~~~~~aL~~~p~n~ka~~~~g~a~~~l~~~~~A~~~l~~al~l~P~----n~  301 (365)
                             ..-.+.=|..++..|+|.+|..++.=+.+++| ++.+|--+|.|++...+|++|...+...   -|+    |.
T Consensus       455 i~i~e~eian~LaDAEyLysqgey~kc~~ys~WL~~iaP-S~~~~RLlGl~l~e~k~Y~eA~~~l~~L---P~n~~~~ds  530 (549)
T PF07079_consen  455 ITISEEEIANFLADAEYLYSQGEYHKCYLYSSWLTKIAP-SPQAYRLLGLCLMENKRYQEAWEYLQKL---PPNERMRDS  530 (549)
T ss_pred             ccccHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCC-cHHHHHHHHHHHHHHhhHHHHHHHHHhC---CCchhhHHH
Confidence                   11122335667789999999999999999999 9999999999999999999999988754   333    34


Q ss_pred             HHHHHHHHHHHHHH
Q 017811          302 SIARELRLLAEHEK  315 (365)
Q Consensus       302 ~~~~~l~~l~~~~~  315 (365)
                      .+++.+..|.+.+-
T Consensus       531 kvqKAl~lCqKh~~  544 (549)
T PF07079_consen  531 KVQKALALCQKHLP  544 (549)
T ss_pred             HHHHHHHHHHHhhh
Confidence            56666676665443

Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown.

>KOG3364 consensus Membrane protein involved in organellar division [Cell wall/membrane/envelope biogenesis]

Probab=94.46  E-value=0.21  Score=40.42  Aligned_cols=43  Identities=23%  Similarity=0.357  Sum_probs=37.3

Q ss_pred             chhhhHHHHHHHHhcCHHHHHHHHHHHHhCCCCCHHHHHHHHH
Q 017811          233 NPCHLNMAACLLKLKRYEEAIGQCSLVLGEDENNVKALFRRGK  275 (365)
Q Consensus       233 ~~~~~nla~~~~kl~~~~~A~~~~~~aL~~~p~n~ka~~~~g~  275 (365)
                      ..+.+-||..|+++++|+.++.+++..|+.+|+|..|.--.-.
T Consensus        71 Re~lyYLAvg~yRlkeY~~s~~yvd~ll~~e~~n~Qa~~Lk~~  113 (149)
T KOG3364|consen   71 RECLYYLAVGHYRLKEYSKSLRYVDALLETEPNNRQALELKET  113 (149)
T ss_pred             hhhhhhhHHHHHHHhhHHHHHHHHHHHHhhCCCcHHHHHHHHH
Confidence            4468899999999999999999999999999999987654433

>PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis []

Probab=94.45  E-value=3  Score=38.42  Aligned_cols=109  Identities=18%  Similarity=0.127  Sum_probs=77.1

Q ss_pred             hhhhhhHHHHHHHHHHHHHhhc-cchhhhhhhhHHHHHHHhhchhhhHHHHHHHHhc-CHHHHHHHHHHHHhC----CC-
Q 017811          192 LFKEEKLEEAMQQYEMAIAYMG-DDFMFQLFGKYRDMALAVKNPCHLNMAACLLKLK-RYEEAIGQCSLVLGE----DE-  264 (365)
Q Consensus       192 ~~~~~~y~~A~~~y~~al~~~~-~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~kl~-~~~~A~~~~~~aL~~----~p-  264 (365)
                      ..++|+++.|..+|.++-...+ .++..          ......+++|.|...++.+ +++.|+...++++++    .+ 
T Consensus         3 A~~~~~~~~A~~~~~K~~~~~~~~~~~~----------~~~La~~~yn~G~~l~~~~~~~~~a~~wL~~a~~~l~~~~~~   72 (278)
T PF08631_consen    3 AWKQGDLDLAEHMYSKAKDLLNSLDPDM----------AEELARVCYNIGKSLLSKKDKYEEAVKWLQRAYDILEKPGKM   72 (278)
T ss_pred             chhhCCHHHHHHHHHHhhhHHhcCCcHH----------HHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhhhhc
Confidence            4678999999999999977662 22111          1224557999999999999 999999999998876    22 


Q ss_pred             --C-------CHHHHHHHHHHHHHcCCHHH---HHHHHHHHHhhCCCcHHHH-HHHHHH
Q 017811          265 --N-------NVKALFRRGKARAELGQTDA---AREDFLKAGKFAPEDKSIA-RELRLL  310 (365)
Q Consensus       265 --~-------n~ka~~~~g~a~~~l~~~~~---A~~~l~~al~l~P~n~~~~-~~l~~l  310 (365)
                        .       ..+.+.-++.+|+..+.++.   |...++.+-.-.|+.+.+. -.+..+
T Consensus        73 ~~~~~~~~elr~~iL~~La~~~l~~~~~~~~~ka~~~l~~l~~e~~~~~~~~~L~l~il  131 (278)
T PF08631_consen   73 DKLSPDGSELRLSILRLLANAYLEWDTYESVEKALNALRLLESEYGNKPEVFLLKLEIL  131 (278)
T ss_pred             cccCCcHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhCCCCcHHHHHHHHHH
Confidence              1       13577889999999888654   5555555555567666655 334444

It is also involved in sporulation [].

>KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport]

Probab=94.41  E-value=0.93  Score=40.57  Aligned_cols=126  Identities=11%  Similarity=-0.014  Sum_probs=80.8

Q ss_pred             hhhhhhhhhhhHHHHHHHHHHHHHhhccchhhhhhhhHHHHHHHhhchhhhHHHHHHHHhcCHHHHHHHHHHHHhCC---
Q 017811          187 MDGNALFKEEKLEEAMQQYEMAIAYMGDDFMFQLFGKYRDMALAVKNPCHLNMAACLLKLKRYEEAIGQCSLVLGED---  263 (365)
Q Consensus       187 ~~G~~~~~~~~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~kl~~~~~A~~~~~~aL~~~---  263 (365)
                      .-++.+-..++|++|..+..+|++....+...-         .  ..+.|-..|+..-.+..|.++..++++|..+.   
T Consensus        36 kAAvafRnAk~feKakdcLlkA~~~yEnnrslf---------h--AAKayEqaamLake~~klsEvvdl~eKAs~lY~E~  104 (308)
T KOG1585|consen   36 KAAVAFRNAKKFEKAKDCLLKASKGYENNRSLF---------H--AAKAYEQAAMLAKELSKLSEVVDLYEKASELYVEC  104 (308)
T ss_pred             HHHHHHHhhccHHHHHHHHHHHHHHHHhcccHH---------H--HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHh
Confidence            334444456889999998888887765543210         0  13457778888888999999999999998764   


Q ss_pred             --CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCcHHHH---HH---HHHHHHHHHHHHHHHHH
Q 017811          264 --ENNVKALFRRGKARAELGQTDAAREDFLKAGKFAPEDKSIA---RE---LRLLAEHEKAVYKKQKE  323 (365)
Q Consensus       264 --p~n~ka~~~~g~a~~~l~~~~~A~~~l~~al~l~P~n~~~~---~~---l~~l~~~~~~~~~~~k~  323 (365)
                        |+-.-.-.-+|-=.....+.++|+..|++++.+-..+...+   ..   ..++..+.+...+....
T Consensus       105 GspdtAAmaleKAak~lenv~Pd~AlqlYqralavve~~dr~~ma~el~gk~sr~lVrl~kf~Eaa~a  172 (308)
T KOG1585|consen  105 GSPDTAAMALEKAAKALENVKPDDALQLYQRALAVVEEDDRDQMAFELYGKCSRVLVRLEKFTEAATA  172 (308)
T ss_pred             CCcchHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHhccchHHHHHHHHHHhhhHhhhhHHhhHHHHH
Confidence              33333333333334566778999999999998765443322   22   33334455555554443

>KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton]

Probab=94.36  E-value=0.45  Score=49.55  Aligned_cols=89  Identities=13%  Similarity=0.114  Sum_probs=79.0

Q ss_pred             HhcCHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHHHHHHHHHHHH
Q 017811          245 KLKRYEEAIGQCSLVLGEDENNVKALFRRGKARAELGQTDAAREDFLKAGKFAPEDKSIARELRLLAEHEKAVYKKQKEI  324 (365)
Q Consensus       245 kl~~~~~A~~~~~~aL~~~p~n~ka~~~~g~a~~~l~~~~~A~~~l~~al~l~P~n~~~~~~l~~l~~~~~~~~~~~k~~  324 (365)
                      ..++|.+|+..|.++++..|+..-|.--.|..+..+|++++|...++..-.+-++|......+..|.+.+++..+.. ..
T Consensus        21 d~~qfkkal~~~~kllkk~Pn~~~a~vLkaLsl~r~gk~~ea~~~Le~~~~~~~~D~~tLq~l~~~y~d~~~~d~~~-~~   99 (932)
T KOG2053|consen   21 DSSQFKKALAKLGKLLKKHPNALYAKVLKALSLFRLGKGDEALKLLEALYGLKGTDDLTLQFLQNVYRDLGKLDEAV-HL   99 (932)
T ss_pred             hhHHHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHhcCchhHHHHHhhhccCCCCchHHHHHHHHHHHHHhhhhHHH-HH
Confidence            45679999999999999999999999999999999999999998888888888888999999999999888877554 55


Q ss_pred             HhcccCCCCC
Q 017811          325 YKGIFGPRPE  334 (365)
Q Consensus       325 y~kmf~~~~~  334 (365)
                      |.+..+..|.
T Consensus       100 Ye~~~~~~P~  109 (932)
T KOG2053|consen  100 YERANQKYPS  109 (932)
T ss_pred             HHHHHhhCCc
Confidence            9999888885

>COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only]

Probab=94.33  E-value=0.067  Score=47.14  Aligned_cols=61  Identities=16%  Similarity=0.140  Sum_probs=53.8

Q ss_pred             hhhhhhhhHHHHHHHHHHHHHhhccchhhhhhhhHHHHHHHhhchhhhHHHHHHHHhcCHHHHHHHHHHHHhCCCCCH
Q 017811          190 NALFKEEKLEEAMQQYEMAIAYMGDDFMFQLFGKYRDMALAVKNPCHLNMAACLLKLKRYEEAIGQCSLVLGEDENNV  267 (365)
Q Consensus       190 ~~~~~~~~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~kl~~~~~A~~~~~~aL~~~p~n~  267 (365)
                      ..+++.+++..|.+.|.+|+.+.|....                 -++.+|....+.|+++.|...|.++|++||.+.
T Consensus         3 ~~~~~~~D~~aaaely~qal~lap~w~~-----------------gwfR~g~~~ekag~~daAa~a~~~~L~ldp~D~   63 (287)
T COG4976           3 YMLAESGDAEAAAELYNQALELAPEWAA-----------------GWFRLGEYTEKAGEFDAAAAAYEEVLELDPEDH   63 (287)
T ss_pred             chhcccCChHHHHHHHHHHhhcCchhhh-----------------hhhhcchhhhhcccHHHHHHHHHHHHcCCcccc
Confidence            3457789999999999999999998533                 389999999999999999999999999999753

>PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene

Probab=94.31  E-value=0.51  Score=46.31  Aligned_cols=116  Identities=18%  Similarity=0.094  Sum_probs=73.8

Q ss_pred             hhhhhhhHHHHHHHHHHHHHhhccchhhhhhhhHHHHHHHhhchhhhHHHH-----HHHHhcCHHHHHHHHHHHHhCC--
Q 017811          191 ALFKEEKLEEAMQQYEMAIAYMGDDFMFQLFGKYRDMALAVKNPCHLNMAA-----CLLKLKRYEEAIGQCSLVLGED--  263 (365)
Q Consensus       191 ~~~~~~~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~-----~~~kl~~~~~A~~~~~~aL~~~--  263 (365)
                      ...+..+...-++.-++||++.|++.+.                 |.-||.     ..-...-|.+|++..+.++..+  
T Consensus       177 ~AWRERnp~aRIkaA~eALei~pdCAdA-----------------YILLAEEeA~Ti~Eae~l~rqAvkAgE~~lg~s~~  239 (539)
T PF04184_consen  177 KAWRERNPQARIKAAKEALEINPDCADA-----------------YILLAEEEASTIVEAEELLRQAVKAGEASLGKSQF  239 (539)
T ss_pred             HHHhcCCHHHHHHHHHHHHHhhhhhhHH-----------------HhhcccccccCHHHHHHHHHHHHHHHHHhhchhhh
Confidence            4567788899999999999999986442                 111111     0000011222222222222211  


Q ss_pred             --------------CCC--HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC--cHHHHHHHHHHHHHHHHHHHHHHH
Q 017811          264 --------------ENN--VKALFRRGKARAELGQTDAAREDFLKAGKFAPE--DKSIARELRLLAEHEKAVYKKQKE  323 (365)
Q Consensus       264 --------------p~n--~ka~~~~g~a~~~l~~~~~A~~~l~~al~l~P~--n~~~~~~l~~l~~~~~~~~~~~k~  323 (365)
                                    ..+  +-+.+|+|.|...+|+.++|++.++..++..|.  +-.++..|-.+...++.+.+.++-
T Consensus       240 ~~~~g~~~e~~~~Rdt~~~~y~KrRLAmCarklGr~~EAIk~~rdLlke~p~~~~l~IrenLie~LLelq~Yad~q~l  317 (539)
T PF04184_consen  240 LQHHGHFWEAWHRRDTNVLVYAKRRLAMCARKLGRLREAIKMFRDLLKEFPNLDNLNIRENLIEALLELQAYADVQAL  317 (539)
T ss_pred             hhcccchhhhhhccccchhhhhHHHHHHHHHHhCChHHHHHHHHHHHhhCCccchhhHHHHHHHHHHhcCCHHHHHHH
Confidence                          112  346678999999999999999999999998886  466788887777766666655543

The molecular function of this protein is uncertain.

>PRK10941 hypothetical protein; Provisional

Probab=94.26  E-value=0.35  Score=44.32  Aligned_cols=77  Identities=14%  Similarity=0.090  Sum_probs=65.6

Q ss_pred             HhhhhhhhhhhhhhHHHHHHHHHHHHHhhccchhhhhhhhHHHHHHHhhchhhhHHHHHHHHhcCHHHHHHHHHHHHhCC
Q 017811          184 RRKMDGNALFKEEKLEEAMQQYEMAIAYMGDDFMFQLFGKYRDMALAVKNPCHLNMAACLLKLKRYEEAIGQCSLVLGED  263 (365)
Q Consensus       184 ~~k~~G~~~~~~~~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~kl~~~~~A~~~~~~aL~~~  263 (365)
                      -+.+.=..+.+.++|..|+++.+..+.+.|+++.-                 +--+|.+|.+++.+..|+.+++.-++..
T Consensus       183 ml~nLK~~~~~~~~~~~AL~~~e~ll~l~P~dp~e-----------------~RDRGll~~qL~c~~~A~~DL~~fl~~~  245 (269)
T PRK10941        183 LLDTLKAALMEEKQMELALRASEALLQFDPEDPYE-----------------IRDRGLIYAQLDCEHVALSDLSYFVEQC  245 (269)
T ss_pred             HHHHHHHHHHHcCcHHHHHHHHHHHHHhCCCCHHH-----------------HHHHHHHHHHcCCcHHHHHHHHHHHHhC
Confidence            34455667889999999999999999999997542                 5679999999999999999999999999


Q ss_pred             CCCHHHHHHHHHHH
Q 017811          264 ENNVKALFRRGKAR  277 (365)
Q Consensus       264 p~n~ka~~~~g~a~  277 (365)
                      |+.+.+-.-+.++.
T Consensus       246 P~dp~a~~ik~ql~  259 (269)
T PRK10941        246 PEDPISEMIRAQIH  259 (269)
T ss_pred             CCchhHHHHHHHHH
Confidence            99988776665543

>PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A

Probab=93.87  E-value=0.15  Score=31.67  Aligned_cols=30  Identities=23%  Similarity=0.120  Sum_probs=26.4

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Q 017811          267 VKALFRRGKARAELGQTDAAREDFLKAGKF  296 (365)
Q Consensus       267 ~ka~~~~g~a~~~l~~~~~A~~~l~~al~l  296 (365)
                      ..++.++|.+|..+|+|++|+..+++++.+
T Consensus         2 a~~~~~la~~~~~~g~~~~A~~~~~~al~~   31 (42)
T PF13374_consen    2 ASALNNLANAYRAQGRYEEALELLEEALEI   31 (42)
T ss_dssp             HHHHHHHHHHHHHCT-HHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhhhhcchhhHHHHHHHHH
Confidence            357889999999999999999999999876

>PF10516 SHNi-TPR: SHNi-TPR; InterPro: IPR019544 The tetratrico peptide repeat region (TPR) is a structural motif present in a wide range of proteins [, , ]

Probab=93.72  E-value=0.11  Score=32.39  Aligned_cols=29  Identities=24%  Similarity=0.141  Sum_probs=24.8

Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Q 017811          268 KALFRRGKARAELGQTDAAREDFLKAGKF  296 (365)
Q Consensus       268 ka~~~~g~a~~~l~~~~~A~~~l~~al~l  296 (365)
                      .+|.++|.+-+..++|++|+.+|++||++
T Consensus         2 dv~~~Lgeisle~e~f~qA~~D~~~aL~i   30 (38)
T PF10516_consen    2 DVYDLLGEISLENENFEQAIEDYEKALEI   30 (38)
T ss_pred             cHHHHHHHHHHHhccHHHHHHHHHHHHHH
Confidence            46788888889999999999999988876

It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. This entry represents SHNi-TPR (Sim3-Hif1-NASP interrupted TPR), a sequence that is an interrupted form of TPR repeat [].

>PF14561 TPR_20: Tetratricopeptide repeat; PDB: 3QOU_A 2R5S_A 3QDN_B

Probab=93.69  E-value=0.8  Score=34.50  Aligned_cols=65  Identities=28%  Similarity=0.244  Sum_probs=45.7

Q ss_pred             HHHHHHHHHHhhccchhhhhhhhHHHHHHHhhchhhhHHHHHHHHhcCHHHHHHHHHHHHhCCCCC--HHHHHHHHHHHH
Q 017811          201 AMQQYEMAIAYMGDDFMFQLFGKYRDMALAVKNPCHLNMAACLLKLKRYEEAIGQCSLVLGEDENN--VKALFRRGKARA  278 (365)
Q Consensus       201 A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~kl~~~~~A~~~~~~aL~~~p~n--~ka~~~~g~a~~  278 (365)
                      .+...++++..+|++..                 +.+.+|.+++..|++++|+..+-.++..++++  -.+.-.+-.++.
T Consensus         7 ~~~al~~~~a~~P~D~~-----------------ar~~lA~~~~~~g~~e~Al~~Ll~~v~~dr~~~~~~ar~~ll~~f~   69 (90)
T PF14561_consen    7 DIAALEAALAANPDDLD-----------------ARYALADALLAAGDYEEALDQLLELVRRDRDYEDDAARKRLLDIFE   69 (90)
T ss_dssp             HHHHHHHHHHHSTT-HH-----------------HHHHHHHHHHHTT-HHHHHHHHHHHHCC-TTCCCCHHHHHHHHHHH
T ss_pred             cHHHHHHHHHcCCCCHH-----------------HHHHHHHHHHHCCCHHHHHHHHHHHHHhCccccccHHHHHHHHHHH
Confidence            35667888888888754                 38999999999999999999999999999876  333333333343


Q ss_pred             HcCC
Q 017811          279 ELGQ  282 (365)
Q Consensus       279 ~l~~  282 (365)
                      .+|.
T Consensus        70 ~lg~   73 (90)
T PF14561_consen   70 LLGP   73 (90)
T ss_dssp             HH-T
T ss_pred             HcCC
Confidence            3333

>KOG2300 consensus Uncharacterized conserved protein [Function unknown]

Probab=93.45  E-value=1.4  Score=43.12  Aligned_cols=99  Identities=17%  Similarity=0.126  Sum_probs=74.2

Q ss_pred             HHHhhhhhhhhhhhhhHHHHHHHHHHHHHhhccchhhhhhhhHHHHHHHhhchhhhHHHHHHHHhcCHHHHHHHHHHHHh
Q 017811          182 ADRRKMDGNALFKEEKLEEAMQQYEMAIAYMGDDFMFQLFGKYRDMALAVKNPCHLNMAACLLKLKRYEEAIGQCSLVLG  261 (365)
Q Consensus       182 a~~~k~~G~~~~~~~~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~kl~~~~~A~~~~~~aL~  261 (365)
                      +.-+.-.|-....-+.|+.|...|..|.+....              .++..-+..|+|..|++.++-+.   ++.-.=.
T Consensus       367 ~~ih~LlGlys~sv~~~enAe~hf~~a~k~t~~--------------~dl~a~~nlnlAi~YL~~~~~ed---~y~~ld~  429 (629)
T KOG2300|consen  367 AQIHMLLGLYSHSVNCYENAEFHFIEATKLTES--------------IDLQAFCNLNLAISYLRIGDAED---LYKALDL  429 (629)
T ss_pred             HHHHHHHhhHhhhcchHHHHHHHHHHHHHhhhH--------------HHHHHHHHHhHHHHHHHhccHHH---HHHHHHh
Confidence            334445777777888889999999999887654              34567788999999999776433   2322223


Q ss_pred             CCCCC----------HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC
Q 017811          262 EDENN----------VKALFRRGKARAELGQTDAAREDFLKAGKFA  297 (365)
Q Consensus       262 ~~p~n----------~ka~~~~g~a~~~l~~~~~A~~~l~~al~l~  297 (365)
                      +.|.|          ..++|-.|.-.+..+++.||...+.+.|+..
T Consensus       430 i~p~nt~s~ssq~l~a~~~~v~glfaf~qn~lnEaK~~l~e~Lkma  475 (629)
T KOG2300|consen  430 IGPLNTNSLSSQRLEASILYVYGLFAFKQNDLNEAKRFLRETLKMA  475 (629)
T ss_pred             cCCCCCCcchHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhc
Confidence            45543          3488889999999999999999999999986

>KOG4814 consensus Uncharacterized conserved protein [Function unknown]

Probab=93.19  E-value=1.1  Score=45.21  Aligned_cols=80  Identities=19%  Similarity=0.070  Sum_probs=67.6

Q ss_pred             hhhhHHHHHHHHhcCHHHHHHHHHHHHhCCCCC------HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCcHHHHHHH
Q 017811          234 PCHLNMAACLLKLKRYEEAIGQCSLVLGEDENN------VKALFRRGKARAELGQTDAAREDFLKAGKFAPEDKSIAREL  307 (365)
Q Consensus       234 ~~~~nla~~~~kl~~~~~A~~~~~~aL~~~p~n------~ka~~~~g~a~~~l~~~~~A~~~l~~al~l~P~n~~~~~~l  307 (365)
                      .++-|-|.-++++.+|..++..|...|..-|.+      .|..-.++.||+.+.+.|.|.+.++.|-+.+|.+.-.+..+
T Consensus       355 ~iLWn~A~~~F~~~~Y~~s~~~y~~Sl~~i~~D~~~~~FaK~qR~l~~CYL~L~QLD~A~E~~~EAE~~d~~~~l~q~~~  434 (872)
T KOG4814|consen  355 TLLWNTAKKLFKMEKYVVSIRFYKLSLKDIISDNYSDRFAKIQRALQVCYLKLEQLDNAVEVYQEAEEVDRQSPLCQLLM  434 (872)
T ss_pred             HHHHHhhHHHHHHHHHHHHHHHHHHHHHhccchhhhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhhccccHHHHHHH
Confidence            467788999999999999999999999776643      57788899999999999999999999999999987766665


Q ss_pred             HHHHHH
Q 017811          308 RLLAEH  313 (365)
Q Consensus       308 ~~l~~~  313 (365)
                      -.....
T Consensus       435 ~~~~~~  440 (872)
T KOG4814|consen  435 LQSFLA  440 (872)
T ss_pred             HHHHHH
Confidence            544333

>PRK13184 pknD serine/threonine-protein kinase; Reviewed

Probab=93.03  E-value=0.81  Score=49.08  Aligned_cols=109  Identities=15%  Similarity=0.131  Sum_probs=78.0

Q ss_pred             hhhhhhhhhhhHHHHHHHHHHHHHhhccchhhhhhhhHHHHHHHhhchhhhHHHHHHHHhc-------CHHHHHHHHHHH
Q 017811          187 MDGNALFKEEKLEEAMQQYEMAIAYMGDDFMFQLFGKYRDMALAVKNPCHLNMAACLLKLK-------RYEEAIGQCSLV  259 (365)
Q Consensus       187 ~~G~~~~~~~~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~kl~-------~~~~A~~~~~~a  259 (365)
                      ...+.+...+.|++|+..|++.-..+|....-              ..+.+.+|...+..-       .+.+|+.-+++.
T Consensus       480 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  545 (932)
T PRK13184        480 AVPDAFLAEKLYDQALIFYRRIRESFPGRKEG--------------YEAQFRLGITLLEKASEQGDPRDFTQALSEFSYL  545 (932)
T ss_pred             cCcHHHHhhHHHHHHHHHHHHHhhcCCCcccc--------------hHHHHHhhHHHHHHHHhcCChHHHHHHHHHHHHh
Confidence            45567889999999999999999999874321              123556666655432       466666666543


Q ss_pred             HhCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCcHHHHHHHHHH
Q 017811          260 LGEDENNVKALFRRGKARAELGQTDAAREDFLKAGKFAPEDKSIARELRLL  310 (365)
Q Consensus       260 L~~~p~n~ka~~~~g~a~~~l~~~~~A~~~l~~al~l~P~n~~~~~~l~~l  310 (365)
                       ---|.-+--|.-.|.+|..+|+|++-++.|..|++..|+++.+-..-..+
T Consensus       546 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  595 (932)
T PRK13184        546 -HGGVGAPLEYLGKALVYQRLGEYNEEIKSLLLALKRYSQHPEISRLRDHL  595 (932)
T ss_pred             -cCCCCCchHHHhHHHHHHHhhhHHHHHHHHHHHHHhcCCCCccHHHHHHH
Confidence             33456677788888889999999999999999999988887665544433

>PF12862 Apc5: Anaphase-promoting complex subunit 5

Probab=92.98  E-value=0.37  Score=36.56  Aligned_cols=65  Identities=15%  Similarity=0.108  Sum_probs=45.2

Q ss_pred             hhhhhhhHHHHHHHHHHHHHhhccchhhhhhhhHHHHHHHhhchhhhHHHHHHHHhcCHHHHHHHHHHHHhCC
Q 017811          191 ALFKEEKLEEAMQQYEMAIAYMGDDFMFQLFGKYRDMALAVKNPCHLNMAACLLKLKRYEEAIGQCSLVLGED  263 (365)
Q Consensus       191 ~~~~~~~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~kl~~~~~A~~~~~~aL~~~  263 (365)
                      ...+.++|..|++.+.+.+...........        ......+.+|+|.++...|++++|+..++.++.+-
T Consensus         7 ~~~~~~dy~~A~d~L~~~fD~~~~~~~~~~--------~~~~~~all~lA~~~~~~G~~~~A~~~l~eAi~~A   71 (94)
T PF12862_consen    7 NALRSGDYSEALDALHRYFDYAKQSNNSSS--------NSGLAYALLNLAELHRRFGHYEEALQALEEAIRLA   71 (94)
T ss_pred             HHHHcCCHHHHHHHHHHHHHHHhhcccchh--------hHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHH
Confidence            356789999999999999887654321100        01122347788888888888888888888887653

>KOG2610 consensus Uncharacterized conserved protein [Function unknown]

Probab=92.90  E-value=0.54  Score=43.91  Aligned_cols=91  Identities=13%  Similarity=-0.012  Sum_probs=61.5

Q ss_pred             hhhhHHHHHHHHHHHHHhhccchhhhhhhhHHHHHHHhhchhhhHHHHHHHHhcCHHHHHHHHHHHHhCCCC-C---HHH
Q 017811          194 KEEKLEEAMQQYEMAIAYMGDDFMFQLFGKYRDMALAVKNPCHLNMAACLLKLKRYEEAIGQCSLVLGEDEN-N---VKA  269 (365)
Q Consensus       194 ~~~~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~kl~~~~~A~~~~~~aL~~~p~-n---~ka  269 (365)
                      ..|-|.+|.+.-.+|+++++.+...                 ...+|.++.-.+++.++.++..+--..-.. .   ..-
T Consensus       187 E~g~y~dAEk~A~ralqiN~~D~Wa-----------------~Ha~aHVlem~~r~Keg~eFM~~ted~Wr~s~mlasHN  249 (491)
T KOG2610|consen  187 ECGIYDDAEKQADRALQINRFDCWA-----------------SHAKAHVLEMNGRHKEGKEFMYKTEDDWRQSWMLASHN  249 (491)
T ss_pred             HhccchhHHHHHHhhccCCCcchHH-----------------HHHHHHHHHhcchhhhHHHHHHhcccchhhhhHHHhhh
Confidence            4566667777777777777665332                 556777777789999999887664432211 1   224


Q ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHH--hhCCCcH
Q 017811          270 LFRRGKARAELGQTDAAREDFLKAG--KFAPEDK  301 (365)
Q Consensus       270 ~~~~g~a~~~l~~~~~A~~~l~~al--~l~P~n~  301 (365)
                      |..-|.+|..-++|+.|+..|.+-+  ++..+|.
T Consensus       250 yWH~Al~~iE~aeye~aleIyD~ei~k~l~k~Da  283 (491)
T KOG2610|consen  250 YWHTALFHIEGAEYEKALEIYDREIWKRLEKDDA  283 (491)
T ss_pred             hHHHHHhhhcccchhHHHHHHHHHHHHHhhccch
Confidence            5667889999999999999997644  3444444

>PF10373 EST1_DNA_bind: Est1 DNA/RNA binding domain; InterPro: IPR018834 Est1 is a protein which recruits or activates telomerase at the site of polymerisation [, ]

Probab=92.89  E-value=1.2  Score=40.62  Aligned_cols=62  Identities=13%  Similarity=-0.056  Sum_probs=51.5

Q ss_pred             HHHHHHHHHhCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHH
Q 017811          252 AIGQCSLVLGEDENNVKALFRRGKARAELGQTDAAREDFLKAGKFAPEDKSIARELRLLAEH  313 (365)
Q Consensus       252 A~~~~~~aL~~~p~n~ka~~~~g~a~~~l~~~~~A~~~l~~al~l~P~n~~~~~~l~~l~~~  313 (365)
                      |..+|.+|+.+.|.+-..|+.+|..+...++.-.|+-+|-+++-..--.+.+...|..+-.+
T Consensus         1 A~~~Y~~A~~l~P~~G~p~nQLAvl~~~~~~~l~avy~y~Rsl~~~~Pf~~A~~NL~~lf~~   62 (278)
T PF10373_consen    1 AERYYRKAIRLLPSNGNPYNQLAVLASYQGDDLDAVYYYIRSLAVRIPFPSARENLQKLFEK   62 (278)
T ss_dssp             HHHHHHHHHHH-TTBSHHHHHHHHHHHHTT-HHHHHHHHHHHHSSSB--HHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHhCCCCCCcccchhhhhccccchHHHHHHHHHHHhcCCCcHHHHHHHHHHHHH
Confidence            68899999999999999999999999999999999999999997655557788777776554

This is the DNA/RNA binding domain of EST1 []. ; PDB: 1YA0_B.

>PF04910 Tcf25: Transcriptional repressor TCF25; InterPro: IPR006994 This entry appears to represent a novel family of basic helix-loop-helix (bHLH) proteins that control differentiation and development of a variety of organs [, ]

Probab=92.05  E-value=3.1  Score=39.90  Aligned_cols=106  Identities=17%  Similarity=0.061  Sum_probs=75.5

Q ss_pred             hhhHHHHHHHHHHHHHhhccchhhhhhhhHHHHHHHhhchhhhHHHHHHHHhcCHHHHHHHHHHHHh---------C---
Q 017811          195 EEKLEEAMQQYEMAIAYMGDDFMFQLFGKYRDMALAVKNPCHLNMAACLLKLKRYEEAIGQCSLVLG---------E---  262 (365)
Q Consensus       195 ~~~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~kl~~~~~A~~~~~~aL~---------~---  262 (365)
                      ...|.++...|..++.....+.-....     ......+..++.++.++...|++..|-+.+++||-         .   
T Consensus         7 s~~Y~~~q~~F~~~v~~~Dp~~l~~ll-----~~~PyHidtLlqls~v~~~~gd~~~A~~lleRALf~~e~~~~~~F~~~   81 (360)
T PF04910_consen    7 SKAYQEAQEQFYAAVQSHDPNALINLL-----QKNPYHIDTLLQLSEVYRQQGDHAQANDLLERALFAFERAFHPSFSPF   81 (360)
T ss_pred             CHHHHHHHHHHHHHHHccCHHHHHHHH-----HHCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHhhhh
Confidence            456777888887777655221111000     00112345689999999999999999999998861         1   


Q ss_pred             --CC------------CC---HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC-cHHHHH
Q 017811          263 --DE------------NN---VKALFRRGKARAELGQTDAAREDFLKAGKFAPE-DKSIAR  305 (365)
Q Consensus       263 --~p------------~n---~ka~~~~g~a~~~l~~~~~A~~~l~~al~l~P~-n~~~~~  305 (365)
                        ++            .|   ..|+||..+.+...|-+.-|++..+-.+.+||. |+-...
T Consensus        82 ~~~~~~g~~rL~~~~~eNR~fflal~r~i~~L~~RG~~rTAlE~~KlLlsLdp~~DP~g~l  142 (360)
T PF04910_consen   82 RSNLTSGNCRLDYRRPENRQFFLALFRYIQSLGRRGCWRTALEWCKLLLSLDPDEDPLGVL  142 (360)
T ss_pred             hcccccCccccCCccccchHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHhcCCCCCcchhH
Confidence              22            22   349999999999999999999999999999999 654333

Human Nulp1 (Q2MK75 from SWISSPROT) is a basic helix-loop-helix protein expressed broadly during early embryonic organogenesis. Over expression of human Nulp1 in COS-7 cells inhibits the transcriptional activity of serum response factor (SRF), suggesting that Nulp1 may act as a novel bHLH transcriptional repressor in the SRF signalling pathway to mediate cellular functions [].

>PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia

Probab=91.96  E-value=1.6  Score=36.51  Aligned_cols=78  Identities=14%  Similarity=-0.033  Sum_probs=49.0

Q ss_pred             hhHHHHHHHHhcCHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHH
Q 017811          236 HLNMAACLLKLKRYEEAIGQCSLVLGEDENNVKALFRRGKARAELGQTDAAREDFLKAGKFAPEDKSIARELRLLAEH  313 (365)
Q Consensus       236 ~~nla~~~~kl~~~~~A~~~~~~aL~~~p~n~ka~~~~g~a~~~l~~~~~A~~~l~~al~l~P~n~~~~~~l~~l~~~  313 (365)
                      +..+..+-++.++.+.+...+...--+.|.++..-.--|..++..|+|.+|+..|+.+..-.|..+.+...+..|...
T Consensus        13 Lie~~~~al~~~~~~D~e~lL~ALrvLRP~~~e~~~~~~~l~i~r~~w~dA~rlLr~l~~~~~~~p~~kALlA~CL~~   90 (160)
T PF09613_consen   13 LIEVLSVALRLGDPDDAEALLDALRVLRPEFPELDLFDGWLHIVRGDWDDALRLLRELEERAPGFPYAKALLALCLYA   90 (160)
T ss_pred             HHHHHHHHHccCChHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhCCHHHHHHHHHHHhccCCCChHHHHHHHHHHHH
Confidence            445555555566666666666655566666666666666666666666666666666666666666666666666543

>PF07720 TPR_3: Tetratricopeptide repeat; InterPro: IPR011716 This entry includes tetratricopeptide-like repeats found in the LcrH/SycD-like chaperones []

Probab=91.91  E-value=0.58  Score=28.65  Aligned_cols=33  Identities=12%  Similarity=0.019  Sum_probs=22.1

Q ss_pred             HHHHHHHHHHHHcCCHHHHHHH--HHHHHhhCCCc
Q 017811          268 KALFRRGKARAELGQTDAARED--FLKAGKFAPED  300 (365)
Q Consensus       268 ka~~~~g~a~~~l~~~~~A~~~--l~~al~l~P~n  300 (365)
                      +.++-+|-.+...|+|++|+..  |.-+..++|.|
T Consensus         2 e~~y~~a~~~y~~~ky~~A~~~~~y~~l~~ld~~n   36 (36)
T PF07720_consen    2 EYLYGLAYNFYQKGKYDEAIHFFQYAFLCALDKYN   36 (36)
T ss_dssp             HHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHTTT-
T ss_pred             cHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhcccC
Confidence            4566777777788888888887  44777777654

; PDB: 3KS2_O 3GZ2_A 3GZ1_A 3GYZ_A 4AM9_A 2VGX_A 2VGY_A.

>PF12862 Apc5: Anaphase-promoting complex subunit 5

Probab=91.88  E-value=1.3  Score=33.55  Aligned_cols=58  Identities=19%  Similarity=0.228  Sum_probs=46.3

Q ss_pred             HHHHhcCHHHHHHHHHHHHhCC----CCC-----HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC
Q 017811          242 CLLKLKRYEEAIGQCSLVLGED----ENN-----VKALFRRGKARAELGQTDAAREDFLKAGKFAPE  299 (365)
Q Consensus       242 ~~~kl~~~~~A~~~~~~aL~~~----p~n-----~ka~~~~g~a~~~l~~~~~A~~~l~~al~l~P~  299 (365)
                      -..+.++|..|++.+.+.+...    ...     .-++..+|.++...|++++|+..++.|+.+...
T Consensus         7 ~~~~~~dy~~A~d~L~~~fD~~~~~~~~~~~~~~~~all~lA~~~~~~G~~~~A~~~l~eAi~~Are   73 (94)
T PF12862_consen    7 NALRSGDYSEALDALHRYFDYAKQSNNSSSNSGLAYALLNLAELHRRFGHYEEALQALEEAIRLARE   73 (94)
T ss_pred             HHHHcCCHHHHHHHHHHHHHHHhhcccchhhHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHH
Confidence            3458899999988777766432    222     468899999999999999999999999998653

>PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases

Probab=91.77  E-value=3.4  Score=38.92  Aligned_cols=122  Identities=18%  Similarity=0.088  Sum_probs=89.0

Q ss_pred             HHHHHhhhhhhhhhhhhhHHHHHHHHHHHHHhhccchhhhhhhhHHHHHHHhhchhhhHHHHHHHHhcCHHHHHHHHHHH
Q 017811          180 GAADRRKMDGNALFKEEKLEEAMQQYEMAIAYMGDDFMFQLFGKYRDMALAVKNPCHLNMAACLLKLKRYEEAIGQCSLV  259 (365)
Q Consensus       180 ~~a~~~k~~G~~~~~~~~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~kl~~~~~A~~~~~~a  259 (365)
                      ..+..+...+..+-+.|++..|.....++....+.....             ...+.+-.|..+-..|+..+|+......
T Consensus       144 ~~~~~~l~~a~~aRk~g~~~~A~~~l~~~~~~~~~~~~~-------------~~~v~~e~akllw~~g~~~~Ai~~L~~~  210 (352)
T PF02259_consen  144 ELAETWLKFAKLARKAGNFQLALSALNRLFQLNPSSESL-------------LPRVFLEYAKLLWAQGEQEEAIQKLREL  210 (352)
T ss_pred             HHHHHHHHHHHHHHHCCCcHHHHHHHHHHhccCCcccCC-------------CcchHHHHHHHHHHcCCHHHHHHHHHHH
Confidence            445667788888999999999999999988876332110             1223556677777788888888877766


Q ss_pred             HhC--C--------------------------------CCCHHHHHHHHHHHHHc------CCHHHHHHHHHHHHhhCCC
Q 017811          260 LGE--D--------------------------------ENNVKALFRRGKARAEL------GQTDAAREDFLKAGKFAPE  299 (365)
Q Consensus       260 L~~--~--------------------------------p~n~ka~~~~g~a~~~l------~~~~~A~~~l~~al~l~P~  299 (365)
                      +..  .                                ....++++.+|.-...+      +.++++...|+.++.++|+
T Consensus       211 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~l~~a~w~~~~~~~~~~~~~~~~~~~~~~a~~~~~~  290 (352)
T PF02259_consen  211 LKCRLSKNIDSISNAELKSGLLESLEVISSTNLDKESKELKAKAFLLLAKWLDELYSKLSSESSDEILKYYKEATKLDPS  290 (352)
T ss_pred             HHHHhhhccccccHHHHhhccccccccccccchhhhhHHHHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHHHhChh
Confidence            651  0                                01246888888888888      8899999999999999999


Q ss_pred             cHHHHHHHHHHHHHH
Q 017811          300 DKSIARELRLLAEHE  314 (365)
Q Consensus       300 n~~~~~~l~~l~~~~  314 (365)
                      ...+...++......
T Consensus       291 ~~k~~~~~a~~~~~~  305 (352)
T PF02259_consen  291 WEKAWHSWALFNDKL  305 (352)
T ss_pred             HHHHHHHHHHHHHHH
Confidence            877777666554433

Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding

>COG5191 Uncharacterized conserved protein, contains HAT (Half-A-TPR) repeat [General function prediction only]

Probab=91.32  E-value=0.42  Score=44.09  Aligned_cols=75  Identities=21%  Similarity=0.148  Sum_probs=63.3

Q ss_pred             hhhHHHHHHHHhcCHHHHHHHHHHHHhCCCCCHHHHHH-HHHHHHHcCCHHHHHHHHHHHHhhCCCcHHHHHHHHH
Q 017811          235 CHLNMAACLLKLKRYEEAIGQCSLVLGEDENNVKALFR-RGKARAELGQTDAAREDFLKAGKFAPEDKSIARELRL  309 (365)
Q Consensus       235 ~~~nla~~~~kl~~~~~A~~~~~~aL~~~p~n~ka~~~-~g~a~~~l~~~~~A~~~l~~al~l~P~n~~~~~~l~~  309 (365)
                      ++...+..-.+.+.|.+.-..|.++|+..|.|+..|.. -+.-+...++++.+...|.++|+++|.++.++.+.-+
T Consensus       109 ~w~~y~~Y~~k~k~y~~~~nI~~~~l~khP~nvdlWI~~c~~e~~~~ani~s~Ra~f~~glR~N~~~p~iw~eyfr  184 (435)
T COG5191         109 IWSQYAAYVIKKKMYGEMKNIFAECLTKHPLNVDLWIYCCAFELFEIANIESSRAMFLKGLRMNSRSPRIWIEYFR  184 (435)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCceeeeeeccchhhhhccHHHHHHHHHhhhccCCCCchHHHHHHH
Confidence            45666666677889999999999999999999998776 5566778899999999999999999999888776443

>PF13281 DUF4071: Domain of unknown function (DUF4071)

Probab=91.22  E-value=3.5  Score=39.55  Aligned_cols=65  Identities=18%  Similarity=0.158  Sum_probs=54.6

Q ss_pred             hhhHHHHHHHH---hcCHHHHHHHHHH-HHhCCCCCHHHHHHHHHHHHHc---------CCHHHHHHHHHHHHhhCCC
Q 017811          235 CHLNMAACLLK---LKRYEEAIGQCSL-VLGEDENNVKALFRRGKARAEL---------GQTDAAREDFLKAGKFAPE  299 (365)
Q Consensus       235 ~~~nla~~~~k---l~~~~~A~~~~~~-aL~~~p~n~ka~~~~g~a~~~l---------~~~~~A~~~l~~al~l~P~  299 (365)
                      +....|.++.+   .|+.++|+..+.. +....+.++..+.-.|.+|..+         ...++|+.+|.++.+++|+
T Consensus       181 i~~~yafALnRrn~~gdre~Al~il~~~l~~~~~~~~d~~gL~GRIyKD~~~~s~~~d~~~ldkAi~~Y~kgFe~~~~  258 (374)
T PF13281_consen  181 IKFQYAFALNRRNKPGDREKALQILLPVLESDENPDPDTLGLLGRIYKDLFLESNFTDRESLDKAIEWYRKGFEIEPD  258 (374)
T ss_pred             HHHHHHHHHhhcccCCCHHHHHHHHHHHHhccCCCChHHHHHHHHHHHHHHHHcCccchHHHHHHHHHHHHHHcCCcc
Confidence            45677888888   9999999999999 4566678899999999988764         2368999999999999976

>PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia

Probab=91.04  E-value=8.4  Score=32.29  Aligned_cols=112  Identities=9%  Similarity=-0.107  Sum_probs=81.0

Q ss_pred             HHHhhhhhhhhhhhhhHHHHHHHHHHHHHhhccchhhhhhhhHHHHHHHhhchhhhHHHHHHHHhcCHHHHHHHHHHHHh
Q 017811          182 ADRRKMDGNALFKEEKLEEAMQQYEMAIAYMGDDFMFQLFGKYRDMALAVKNPCHLNMAACLLKLKRYEEAIGQCSLVLG  261 (365)
Q Consensus       182 a~~~k~~G~~~~~~~~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~kl~~~~~A~~~~~~aL~  261 (365)
                      +..+.+....-...++..++...+...--+-|.....                 -.--|..++..|+|.+|+..++.+.+
T Consensus        10 v~gLie~~~~al~~~~~~D~e~lL~ALrvLRP~~~e~-----------------~~~~~~l~i~r~~w~dA~rlLr~l~~   72 (160)
T PF09613_consen   10 VGGLIEVLSVALRLGDPDDAEALLDALRVLRPEFPEL-----------------DLFDGWLHIVRGDWDDALRLLRELEE   72 (160)
T ss_pred             HHHHHHHHHHHHccCChHHHHHHHHHHHHhCCCchHH-----------------HHHHHHHHHHhCCHHHHHHHHHHHhc
Confidence            4456666677777778888888886666666665432                 55678899999999999999999999


Q ss_pred             CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHH
Q 017811          262 EDENNVKALFRRGKARAELGQTDAAREDFLKAGKFAPEDKSIARELRLLAE  312 (365)
Q Consensus       262 ~~p~n~ka~~~~g~a~~~l~~~~~A~~~l~~al~l~P~n~~~~~~l~~l~~  312 (365)
                      -.|..+-+---++.|+..+++.+= ..+-..+++..+ |+.+...++.+..
T Consensus        73 ~~~~~p~~kALlA~CL~~~~D~~W-r~~A~evle~~~-d~~a~~Lv~~Ll~  121 (160)
T PF09613_consen   73 RAPGFPYAKALLALCLYALGDPSW-RRYADEVLESGA-DPDARALVRALLA  121 (160)
T ss_pred             cCCCChHHHHHHHHHHHHcCChHH-HHHHHHHHhcCC-ChHHHHHHHHHHH
Confidence            999888777778889999998631 112233454443 6777766666644

>PF09986 DUF2225: Uncharacterized protein conserved in bacteria (DUF2225); InterPro: IPR018708 This conserved bacterial family has no known function

Probab=90.97  E-value=2.4  Score=37.53  Aligned_cols=88  Identities=17%  Similarity=0.082  Sum_probs=61.8

Q ss_pred             HHHHHHHhhhhhhhhhhhhhHHHHHHHHHHHHHhhccchhhhhhhhHHHHHHHhhchhhhHHHHHHHHhcCHHHHHHHHH
Q 017811          178 RIGAADRRKMDGNALFKEEKLEEAMQQYEMAIAYMGDDFMFQLFGKYRDMALAVKNPCHLNMAACLLKLKRYEEAIGQCS  257 (365)
Q Consensus       178 ~~~~a~~~k~~G~~~~~~~~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~kl~~~~~A~~~~~  257 (365)
                      -+..|--++..|+......-+..|+..|.+|+........ +.   .       ...+.+-+|..+.++|++++|+.++.
T Consensus       121 ~LrlAWlyR~~~~~~~E~~fl~~Al~~y~~a~~~e~~~~~-~~---~-------~~~l~YLigeL~rrlg~~~eA~~~fs  189 (214)
T PF09986_consen  121 CLRLAWLYRDLGDEENEKRFLRKALEFYEEAYENEDFPIE-GM---D-------EATLLYLIGELNRRLGNYDEAKRWFS  189 (214)
T ss_pred             HHHHHHHhhccCCHHHHHHHHHHHHHHHHHHHHhCcCCCC-Cc---h-------HHHHHHHHHHHHHHhCCHHHHHHHHH
Confidence            3556666777777777777788888888888876643111 00   0       12367889999999999999999999


Q ss_pred             HHHhCCCCCH-HHHHHHHHH
Q 017811          258 LVLGEDENNV-KALFRRGKA  276 (365)
Q Consensus       258 ~aL~~~p~n~-ka~~~~g~a  276 (365)
                      +++.....+. ..+..+|+-
T Consensus       190 ~vi~~~~~s~~~~l~~~AR~  209 (214)
T PF09986_consen  190 RVIGSKKASKEPKLKDMARD  209 (214)
T ss_pred             HHHcCCCCCCcHHHHHHHHH
Confidence            9998654433 355555553

>PF12968 DUF3856: Domain of Unknown Function (DUF3856); InterPro: IPR024552 This domain of unknown function is found in a small group of tetratricopeptide-like proteins, which includes the uncharacterised protein Q8KAL8 from SWISSPROT

Probab=90.95  E-value=0.66  Score=36.71  Aligned_cols=74  Identities=19%  Similarity=0.087  Sum_probs=55.7

Q ss_pred             HHHhhhhhhhhhhhhhHHHHHHHHHHHHHhhccchhhhhhhhHHHHHHHhhchhhhHHHHHHHHhcCHHHHHHHHHHHHh
Q 017811          182 ADRRKMDGNALFKEEKLEEAMQQYEMAIAYMGDDFMFQLFGKYRDMALAVKNPCHLNMAACLLKLKRYEEAIGQCSLVLG  261 (365)
Q Consensus       182 a~~~k~~G~~~~~~~~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~kl~~~~~A~~~~~~aL~  261 (365)
                      |-.+-.....+...|+|++++..-.+||.++...-..      .+..-.+.+.+-+++|.++..+|+.++|+..++++-+
T Consensus        55 A~chA~Ls~A~~~Lgry~e~L~sA~~aL~YFNRRGEL------~qdeGklWIaaVfsra~Al~~~Gr~~eA~~~fr~agE  128 (144)
T PF12968_consen   55 AFCHAGLSGALAGLGRYDECLQSADRALRYFNRRGEL------HQDEGKLWIAAVFSRAVALEGLGRKEEALKEFRMAGE  128 (144)
T ss_dssp             HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHH--T------TSTHHHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhhccHHHHHHHHHHHHHHHhhcccc------ccccchhHHHHHHHHHHHHHhcCChHHHHHHHHHHHH
Confidence            4556677788889999999999999999988653221      1112345577789999999999999999999998764

The structure of Q8KAL8 is known and belongs to the SCOP all alpha class, TPR-like superfamily, CT2138-like family.; PDB: 2HR2_D.

>cd02682 MIT_AAA_Arch MIT: domain contained within Microtubule Interacting and Trafficking molecules

Probab=90.87  E-value=1.3  Score=32.10  Aligned_cols=35  Identities=23%  Similarity=0.317  Sum_probs=30.5

Q ss_pred             HHHHHhhhhhhhhhhhhhHHHHHHHHHHHHHhhcc
Q 017811          180 GAADRRKMDGNALFKEEKLEEAMQQYEMAIAYMGD  214 (365)
Q Consensus       180 ~~a~~~k~~G~~~~~~~~y~~A~~~y~~al~~~~~  214 (365)
                      +.|..+-.++..+=+.|+|.+|+.+|++||+.+-.
T Consensus         4 ~~A~~~a~~AVe~D~~gr~~eAi~~Y~~aIe~L~q   38 (75)
T cd02682           4 EMARKYAINAVKAEKEGNAEDAITNYKKAIEVLSQ   38 (75)
T ss_pred             HHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHH
Confidence            45777888999999999999999999999988743

This sub-family of MIT domains is found in mostly archaebacterial AAA-ATPases. The molecular function of the MIT domain is unclear.

>KOG1550 consensus Extracellular protein SEL-1 and related proteins [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]

Probab=90.67  E-value=3.7  Score=41.89  Aligned_cols=90  Identities=17%  Similarity=0.138  Sum_probs=71.1

Q ss_pred             hhhhhhhhh----h-hHHHHHHHHHHHHHhhccchhhhhhhhHHHHHHHhhchhhhHHHHHHHHhc---CHHHHHHHHHH
Q 017811          187 MDGNALFKE----E-KLEEAMQQYEMAIAYMGDDFMFQLFGKYRDMALAVKNPCHLNMAACLLKLK---RYEEAIGQCSL  258 (365)
Q Consensus       187 ~~G~~~~~~----~-~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~kl~---~~~~A~~~~~~  258 (365)
                      ..|..|++.    . ++..|+..|.+|...-..+                   +.+++|.||..-.   ++..|..+|..
T Consensus       293 ~lg~~Y~~g~~~~~~d~~~A~~~~~~aA~~g~~~-------------------a~~~lg~~~~~g~~~~d~~~A~~yy~~  353 (552)
T KOG1550|consen  293 GLGRLYLQGLGVEKIDYEKALKLYTKAAELGNPD-------------------AQYLLGVLYETGTKERDYRRAFEYYSL  353 (552)
T ss_pred             HHHHHHhcCCCCccccHHHHHHHHHHHHhcCCch-------------------HHHHHHHHHHcCCccccHHHHHHHHHH
Confidence            466677663    2 7888999999998875443                   4778899988765   57889999988


Q ss_pred             HHhCCCCCHHHHHHHHHHHHHc----CCHHHHHHHHHHHHhhC
Q 017811          259 VLGEDENNVKALFRRGKARAEL----GQTDAAREDFLKAGKFA  297 (365)
Q Consensus       259 aL~~~p~n~ka~~~~g~a~~~l----~~~~~A~~~l~~al~l~  297 (365)
                      |...  .++.|+|++|.||..-    -+...|..+++++.+..
T Consensus       354 Aa~~--G~~~A~~~la~~y~~G~gv~r~~~~A~~~~k~aA~~g  394 (552)
T KOG1550|consen  354 AAKA--GHILAIYRLALCYELGLGVERNLELAFAYYKKAAEKG  394 (552)
T ss_pred             HHHc--CChHHHHHHHHHHHhCCCcCCCHHHHHHHHHHHHHcc
Confidence            8765  4899999999998864    56789999999999887

>TIGR03504 FimV_Cterm FimV C-terminal domain

Probab=90.46  E-value=1  Score=28.92  Aligned_cols=25  Identities=24%  Similarity=0.298  Sum_probs=19.6

Q ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHh
Q 017811          271 FRRGKARAELGQTDAAREDFLKAGK  295 (365)
Q Consensus       271 ~~~g~a~~~l~~~~~A~~~l~~al~  295 (365)
                      +.+|.+|..+|+++.|...++.++.
T Consensus         3 LdLA~ayie~Gd~e~Ar~lL~evl~   27 (44)
T TIGR03504         3 LDLARAYIEMGDLEGARELLEEVIE   27 (44)
T ss_pred             hHHHHHHHHcCChHHHHHHHHHHHH
Confidence            5677888888888888888888774

This protein is found at the extreme C-terminus of FimV from Pseudomonas aeruginosa, and of TspA of Neisseria meningitidis. Disruption of the former blocks twitching motility from type IV pili; Semmler, et al. suggest a role in peptidoglycan layer remodelling required by type IV fimbrial systems.

>PF04212 MIT: MIT (microtubule interacting and transport) domain; InterPro: IPR007330 The MIT domain is found in vacuolar sorting proteins, spastin (probable ATPase involved in the assembly or function of nuclear protein complexes), and a sorting nexin, which may play a role in intracellular trafficking

Probab=90.35  E-value=1.6  Score=30.91  Aligned_cols=36  Identities=22%  Similarity=0.224  Sum_probs=30.8

Q ss_pred             HHHHHHhhhhhhhhhhhhhHHHHHHHHHHHHHhhcc
Q 017811          179 IGAADRRKMDGNALFKEEKLEEAMQQYEMAIAYMGD  214 (365)
Q Consensus       179 ~~~a~~~k~~G~~~~~~~~y~~A~~~y~~al~~~~~  214 (365)
                      ++.|..+...|..+=+.|+|.+|+.+|.+|+..+-.
T Consensus         2 ~~~A~~~~~~Av~~D~~g~~~~A~~~Y~~ai~~l~~   37 (69)
T PF04212_consen    2 LDKAIELIKKAVEADEAGNYEEALELYKEAIEYLMQ   37 (69)
T ss_dssp             HHHHHHHHHHHHHHHHTTSHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHH
Confidence            356777888889999999999999999999998754

; PDB: 2DL1_A 2JQK_A 1WR0_A 2CPT_A 2JQH_A 2V6Y_A 2JQ9_A 2K3W_A 1YXR_A 3EAB_E ....

>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]

Probab=90.32  E-value=1.6  Score=40.06  Aligned_cols=55  Identities=18%  Similarity=0.145  Sum_probs=48.0

Q ss_pred             HHHHHHHHhcCHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 017811          238 NMAACLLKLKRYEEAIGQCSLVLGEDENNVKALFRRGKARAELGQTDAAREDFLK  292 (365)
Q Consensus       238 nla~~~~kl~~~~~A~~~~~~aL~~~p~n~ka~~~~g~a~~~l~~~~~A~~~l~~  292 (365)
                      .-+.-.+..+++.+|...+..++..+|+|..+..-++.||...|+++.|...|..
T Consensus       139 ~~~~~~~~~e~~~~a~~~~~~al~~~~~~~~~~~~la~~~l~~g~~e~A~~iL~~  193 (304)
T COG3118         139 AEAKELIEAEDFGEAAPLLKQALQAAPENSEAKLLLAECLLAAGDVEAAQAILAA  193 (304)
T ss_pred             HHhhhhhhccchhhHHHHHHHHHHhCcccchHHHHHHHHHHHcCChHHHHHHHHh
Confidence            4455667889999999999999999999999999999999999999887766553

>PF10516 SHNi-TPR: SHNi-TPR; InterPro: IPR019544 The tetratrico peptide repeat region (TPR) is a structural motif present in a wide range of proteins [, , ]

Probab=90.28  E-value=0.44  Score=29.62  Aligned_cols=29  Identities=17%  Similarity=0.124  Sum_probs=26.6

Q ss_pred             hhhHHHHHHHHhcCHHHHHHHHHHHHhCC
Q 017811          235 CHLNMAACLLKLKRYEEAIGQCSLVLGED  263 (365)
Q Consensus       235 ~~~nla~~~~kl~~~~~A~~~~~~aL~~~  263 (365)
                      +|..||.+-+..++|.+|+.+|.++|++.
T Consensus         3 v~~~Lgeisle~e~f~qA~~D~~~aL~i~   31 (38)
T PF10516_consen    3 VYDLLGEISLENENFEQAIEDYEKALEIQ   31 (38)
T ss_pred             HHHHHHHHHHHhccHHHHHHHHHHHHHHH
Confidence            58899999999999999999999999764

It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. This entry represents SHNi-TPR (Sim3-Hif1-NASP interrupted TPR), a sequence that is an interrupted form of TPR repeat [].

>cd02681 MIT_calpain7_1 MIT: domain contained within Microtubule Interacting and Trafficking molecules

Probab=90.06  E-value=1.2  Score=32.33  Aligned_cols=35  Identities=17%  Similarity=-0.034  Sum_probs=30.3

Q ss_pred             HHHHHhhhhhhhhhhhhhHHHHHHHHHHHHHhhcc
Q 017811          180 GAADRRKMDGNALFKEEKLEEAMQQYEMAIAYMGD  214 (365)
Q Consensus       180 ~~a~~~k~~G~~~~~~~~y~~A~~~y~~al~~~~~  214 (365)
                      ..|..+-..|..+=+.|+|.+|+.+|..||+.+-.
T Consensus         4 ~~Ai~~a~~Ave~D~~g~y~eA~~~Y~~aie~l~~   38 (76)
T cd02681           4 RDAVQFARLAVQRDQEGRYSEAVFYYKEAAQLLIY   38 (76)
T ss_pred             HHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHH
Confidence            45677788899999999999999999999998743

This sub-family of MIT domains is found in the nuclear thiol protease PalBH. The molecular function of the MIT domain is unclear.

>PF10952 DUF2753: Protein of unknown function (DUF2753); InterPro: IPR020206 This entry represents a group of uncharacterised proteins

Probab=89.94  E-value=1.5  Score=34.85  Aligned_cols=118  Identities=19%  Similarity=0.106  Sum_probs=75.9

Q ss_pred             HhhhhhhhhhhhhhHHHHHHHHHHHHHhhccchhhhhhhhHHHHHHHhhchhhhHHHHHHHHhcCHHHHHHHHHH----H
Q 017811          184 RRKMDGNALFKEEKLEEAMQQYEMAIAYMGDDFMFQLFGKYRDMALAVKNPCHLNMAACLLKLKRYEEAIGQCSL----V  259 (365)
Q Consensus       184 ~~k~~G~~~~~~~~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~kl~~~~~A~~~~~~----a  259 (365)
                      ++-..|+..++.+++-.|+-+|++|+.+...-..  ..+..-+....+.+....|||..+-.+|+.+-.+.|..-    +
T Consensus         3 ~htllAd~a~~~~~~l~si~hYQqAls~se~~~~--~~~~el~dll~i~VisCHNLA~FWR~~gd~~yELkYLqlASE~V   80 (140)
T PF10952_consen    3 KHTLLADQAFKEADPLRSILHYQQALSLSEEIDE--SNEIELEDLLTISVISCHNLADFWRSQGDSDYELKYLQLASEKV   80 (140)
T ss_pred             hHHHHHHHHhhcccHHHHHHHHHHHHHHHHHhcc--cccccHHHHHHHHHHHHhhHHHHHHHcCChHHHHHHHHHHHHHH
Confidence            4567889999999999999999999988654311  112223334455566688999999999999999998764    5


Q ss_pred             HhCCCCCHHHHHHHHHH-HHHcCCHHHHHHHHHHHHhhCCCcHHHHHHHHHH
Q 017811          260 LGEDENNVKALFRRGKA-RAELGQTDAAREDFLKAGKFAPEDKSIARELRLL  310 (365)
Q Consensus       260 L~~~p~n~ka~~~~g~a-~~~l~~~~~A~~~l~~al~l~P~n~~~~~~l~~l  310 (365)
                      +.+-|.-+..-   ..+ .-.+|--..|+-+|   ++..|+ +.+.+.+..+
T Consensus        81 ltLiPQCp~~~---C~afi~sLGCCk~ALl~F---~KRHPN-P~iA~~vq~i  125 (140)
T PF10952_consen   81 LTLIPQCPNTE---CEAFIDSLGCCKKALLDF---MKRHPN-PEIARLVQHI  125 (140)
T ss_pred             HHhccCCCCcc---hHHHHHhhhccHHHHHHH---HHhCCC-HHHHHHHHhc
Confidence            66666533210   111 12234444455444   345665 6666665543

>KOG2300 consensus Uncharacterized conserved protein [Function unknown]

Probab=89.45  E-value=3.1  Score=40.86  Aligned_cols=102  Identities=18%  Similarity=0.054  Sum_probs=81.5

Q ss_pred             HHHHHhhhhhhhhhh-hhhHHHHHHHHHHHHHhhccchhhhhhhhHHHHHHHhhchhhhHHHHHHHHhc-CHHHHHHHHH
Q 017811          180 GAADRRKMDGNALFK-EEKLEEAMQQYEMAIAYMGDDFMFQLFGKYRDMALAVKNPCHLNMAACLLKLK-RYEEAIGQCS  257 (365)
Q Consensus       180 ~~a~~~k~~G~~~~~-~~~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~kl~-~~~~A~~~~~  257 (365)
                      -.|..+...|..++. ..+++.|..+.++|..+...-+.|          .+++-.++.-||.||.... .+..|....+
T Consensus        44 veart~LqLg~lL~~yT~N~elAksHLekA~~i~~~ip~f----------ydvKf~a~SlLa~lh~~~~~s~~~~KalLr  113 (629)
T KOG2300|consen   44 VEARTHLQLGALLLRYTKNVELAKSHLEKAWLISKSIPSF----------YDVKFQAASLLAHLHHQLAQSFPPAKALLR  113 (629)
T ss_pred             HHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHcccccH----------HhhhhHHHHHHHHHHHHhcCCCchHHHHHH
Confidence            346777788887776 689999999999999887654333          1334445788999999998 8999999999


Q ss_pred             HHHhCCCCC----HHHHHHHHHHHHHcCCHHHHHHHHH
Q 017811          258 LVLGEDENN----VKALFRRGKARAELGQTDAAREDFL  291 (365)
Q Consensus       258 ~aL~~~p~n----~ka~~~~g~a~~~l~~~~~A~~~l~  291 (365)
                      +++++-.++    .|.+|.+++.+.-..+|..|++.+.
T Consensus       114 kaielsq~~p~wsckllfQLaql~~idkD~~sA~elLa  151 (629)
T KOG2300|consen  114 KAIELSQSVPYWSCKLLFQLAQLHIIDKDFPSALELLA  151 (629)
T ss_pred             HHHHHhcCCchhhHHHHHHHHHHHhhhccchhHHHHHh
Confidence            999987665    4788999999999999999988754

>PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome

Probab=89.33  E-value=9.1  Score=32.70  Aligned_cols=74  Identities=15%  Similarity=0.049  Sum_probs=59.4

Q ss_pred             hhhhHHHHHHHHhcCHHHHHHHHHHHHhCCCCC---HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC--CcHHHHHHH
Q 017811          234 PCHLNMAACLLKLKRYEEAIGQCSLVLGEDENN---VKALFRRGKARAELGQTDAAREDFLKAGKFAP--EDKSIAREL  307 (365)
Q Consensus       234 ~~~~nla~~~~kl~~~~~A~~~~~~aL~~~p~n---~ka~~~~g~a~~~l~~~~~A~~~l~~al~l~P--~n~~~~~~l  307 (365)
                      .++..+|.-|.+.|+++.|+..|.++.......   ...+++.-.+.+..++|..+...+.++-.+-.  .+.+.+..|
T Consensus        37 ~~~~~l~~~~~~~Gd~~~A~k~y~~~~~~~~~~~~~id~~l~~irv~i~~~d~~~v~~~i~ka~~~~~~~~d~~~~nrl  115 (177)
T PF10602_consen   37 MALEDLADHYCKIGDLEEALKAYSRARDYCTSPGHKIDMCLNVIRVAIFFGDWSHVEKYIEKAESLIEKGGDWERRNRL  115 (177)
T ss_pred             HHHHHHHHHHHHhhhHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhccchHHHHHHH
Confidence            468999999999999999999999988765432   45788899999999999999999999887643  344444433

This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome.

>PF11817 Foie-gras_1: Foie gras liver health family 1; InterPro: IPR021773 Mutating the gene foie gras in zebrafish has been shown to affect development; the mutants develop large, lipid-filled hepatocytes in the liver, resembling those in individuals with fatty liver disease []

Probab=88.93  E-value=1.4  Score=39.96  Aligned_cols=63  Identities=13%  Similarity=0.148  Sum_probs=46.5

Q ss_pred             hhhhhhhhhhhHHHHHHHHHHHHHhhccchhhhhhhhHHHHHHHhhchhhhHHHHHHHHhcCHHHHHHHHHHHH
Q 017811          187 MDGNALFKEEKLEEAMQQYEMAIAYMGDDFMFQLFGKYRDMALAVKNPCHLNMAACLLKLKRYEEAIGQCSLVL  260 (365)
Q Consensus       187 ~~G~~~~~~~~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~kl~~~~~A~~~~~~aL  260 (365)
                      ..|..++..|+|++|+..|+.+.........           ..+...++..+..|+.++|+.+..+..|-+.+
T Consensus       183 ~~A~ey~~~g~~~~A~~~l~~~~~~yr~egW-----------~~l~~~~l~~l~~Ca~~~~~~~~~l~~~leLl  245 (247)
T PF11817_consen  183 EMAEEYFRLGDYDKALKLLEPAASSYRREGW-----------WSLLTEVLWRLLECAKRLGDVEDYLTTSLELL  245 (247)
T ss_pred             HHHHHHHHCCCHHHHHHHHHHHHHHHHhCCc-----------HHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHh
Confidence            5788888888888888888888666544322           23345567888888888888888888776655

Foie-gras protein is long and has several well-defined domains though none of them has a known function. We have annotated this one as the first []. THe C terminus of this region contains TPR repeats.

>PF06957 COPI_C: Coatomer (COPI) alpha subunit C-terminus; InterPro: IPR010714 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment

Probab=88.88  E-value=1.8  Score=42.18  Aligned_cols=126  Identities=15%  Similarity=0.125  Sum_probs=70.7

Q ss_pred             HHHHHHHhhhhhhhhhhhhhHHHHHHHHHHHHHhhccchhhhhhhhHHHHHHHhhchhhhHHHHHHHHhc--C-----HH
Q 017811          178 RIGAADRRKMDGNALFKEEKLEEAMQQYEMAIAYMGDDFMFQLFGKYRDMALAVKNPCHLNMAACLLKLK--R-----YE  250 (365)
Q Consensus       178 ~~~~a~~~k~~G~~~~~~~~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~kl~--~-----~~  250 (365)
                      .+.........|-.++..|+|.+|+..|+.+|...|-....  ..++.+++.++...|.-.+-.+.+.+.  .     .+
T Consensus       200 ~l~~L~~~Lk~gyk~~t~gKF~eA~~~Fr~iL~~i~l~vv~--~~~E~~e~~eli~icrEYilgl~iEl~Rr~l~~~~~~  277 (422)
T PF06957_consen  200 SLSSLEERLKEGYKLFTAGKFEEAIEIFRSILHSIPLLVVE--SREEEDEAKELIEICREYILGLSIELERRELPKDPVE  277 (422)
T ss_dssp             -HHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHC--BS--SCHHHHHHHHHHHHHHHHHHHHHHHHHHCTS-TTTHH
T ss_pred             CHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhheeeec--CHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccchh
Confidence            34445556678999999999999999999999887643211  122333444444444333322333322  1     22


Q ss_pred             HHHHHHHHH-----HhCCCCCHH-HHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCcHHHHH
Q 017811          251 EAIGQCSLV-----LGEDENNVK-ALFRRGKARAELGQTDAAREDFLKAGKFAPEDKSIAR  305 (365)
Q Consensus       251 ~A~~~~~~a-----L~~~p~n~k-a~~~~g~a~~~l~~~~~A~~~l~~al~l~P~n~~~~~  305 (365)
                      .....++.+     ..+.|.+.- ++..--...++.++|.-|...-++.|++.|....+.+
T Consensus       278 ~~kR~lELAAYFThc~LQp~H~~LaLr~AM~~~~K~KNf~tAa~FArRLLel~p~~~~a~q  338 (422)
T PF06957_consen  278 DQKRNLELAAYFTHCKLQPSHLILALRSAMSQAFKLKNFITAASFARRLLELNPSPEVAEQ  338 (422)
T ss_dssp             HHHHHHHHHHHHCCS---HHHHHHHHHHHHHHCCCTTBHHHHHHHHHHHHCT--SCHHHHH
T ss_pred             hHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHcCCCHHHHHH
Confidence            222222222     345565544 3333344667789999999999999999998754443

This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the C terminus (approximately 500 residues) of the eukaryotic coatomer alpha subunit [, ]. This domain is found along with the IPR006692 from INTERPRO domain. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0005515 protein binding, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030126 COPI vesicle coat; PDB: 3MKR_B 3MV2_E 3MKQ_B 3MV3_A.

>PF13281 DUF4071: Domain of unknown function (DUF4071)

Probab=88.79  E-value=8  Score=37.16  Aligned_cols=117  Identities=16%  Similarity=0.073  Sum_probs=87.3

Q ss_pred             chhhhHHHHHHHHhcCHHHHHHHHHHHHhC----CCCCHHHHHHHHHHHHH---cCCHHHHHHHHHHHH-hhCCCcHHHH
Q 017811          233 NPCHLNMAACLLKLKRYEEAIGQCSLVLGE----DENNVKALFRRGKARAE---LGQTDAAREDFLKAG-KFAPEDKSIA  304 (365)
Q Consensus       233 ~~~~~nla~~~~kl~~~~~A~~~~~~aL~~----~p~n~ka~~~~g~a~~~---l~~~~~A~~~l~~al-~l~P~n~~~~  304 (365)
                      ..+..|+=.+|-..++|+.-+...+..-.+    -++.....+.+|.|+..   .|+.++|+..+..++ ...+.++++.
T Consensus       141 ~div~~lllSyRdiqdydamI~Lve~l~~~p~~~~~~~~~i~~~yafALnRrn~~gdre~Al~il~~~l~~~~~~~~d~~  220 (374)
T PF13281_consen  141 PDIVINLLLSYRDIQDYDAMIKLVETLEALPTCDVANQHNIKFQYAFALNRRNKPGDREKALQILLPVLESDENPDPDTL  220 (374)
T ss_pred             hhHHHHHHHHhhhhhhHHHHHHHHHHhhccCccchhcchHHHHHHHHHHhhcccCCCHHHHHHHHHHHHhccCCCChHHH
Confidence            345778889999999999999988877666    45567778888889988   999999999999954 4555678888


Q ss_pred             HHHHHHHHHHH--------HHHHHHHHHHhcccCCCCCccccchhHHHHHHHHHHHHH
Q 017811          305 RELRLLAEHEK--------AVYKKQKEIYKGIFGPRPEPKQKKNWLIIFWQLLVSLVL  354 (365)
Q Consensus       305 ~~l~~l~~~~~--------~~~~~~k~~y~kmf~~~~~~~~~~~~~~~~~~~~~~~~~  354 (365)
                      -.++.+++.+-        +...+.-..|++-|...+     ..|.|+=+..|+.+-.
T Consensus       221 gL~GRIyKD~~~~s~~~d~~~ldkAi~~Y~kgFe~~~-----~~Y~GIN~AtLL~~~g  273 (374)
T PF13281_consen  221 GLLGRIYKDLFLESNFTDRESLDKAIEWYRKGFEIEP-----DYYSGINAATLLMLAG  273 (374)
T ss_pred             HHHHHHHHHHHHHcCccchHHHHHHHHHHHHHHcCCc-----cccchHHHHHHHHHcC
Confidence            88888876432        245566788999998886     3455555555544433

>COG4455 ImpE Protein of avirulence locus involved in temperature-dependent protein secretion [General function prediction only]

Probab=88.55  E-value=4.6  Score=35.66  Aligned_cols=72  Identities=18%  Similarity=0.114  Sum_probs=62.0

Q ss_pred             HHHHHhcCHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHH
Q 017811          241 ACLLKLKRYEEAIGQCSLVLGEDENNVKALFRRGKARAELGQTDAAREDFLKAGKFAPEDKSIARELRLLAE  312 (365)
Q Consensus       241 ~~~~kl~~~~~A~~~~~~aL~~~p~n~ka~~~~g~a~~~l~~~~~A~~~l~~al~l~P~n~~~~~~l~~l~~  312 (365)
                      .-+++.+...+|+.....-++.+|.+.-....+=+.|.-.|+|++|+..++-+-.++|++....+..+.+..
T Consensus         9 seLL~~~sL~dai~~a~~qVkakPtda~~RhflfqLlcvaGdw~kAl~Ql~l~a~l~p~~t~~a~lyr~lir   80 (273)
T COG4455           9 SELLDDNSLQDAIGLARDQVKAKPTDAGGRHFLFQLLCVAGDWEKALAQLNLAATLSPQDTVGASLYRHLIR   80 (273)
T ss_pred             HHHHHhccHHHHHHHHHHHHhcCCccccchhHHHHHHhhcchHHHHHHHHHHHhhcCcccchHHHHHHHHHH
Confidence            356788899999999999999999999988888899999999999999999999999998665555554433

>PF10345 Cohesin_load: Cohesin loading factor; InterPro: IPR019440 Cohesin loading factor is a conserved protein that has been characterised in fungi

Probab=88.07  E-value=25  Score=36.35  Aligned_cols=110  Identities=10%  Similarity=-0.042  Sum_probs=81.6

Q ss_pred             HHHhhhhhhhhhhhhhHHHHHHHHHHHHHhhccch-------hhhh--hhhHHHHHHHhhchhhhHHHHHHHHhcCHHHH
Q 017811          182 ADRRKMDGNALFKEEKLEEAMQQYEMAIAYMGDDF-------MFQL--FGKYRDMALAVKNPCHLNMAACLLKLKRYEEA  252 (365)
Q Consensus       182 a~~~k~~G~~~~~~~~y~~A~~~y~~al~~~~~~~-------~~~~--~~~~~~~~~~~~~~~~~nla~~~~kl~~~~~A  252 (365)
                      +-.+.-.|-.....+..++|.+++.+|++......       ..+.  ..........+...+++.++.|.+-+++|..|
T Consensus       301 ~L~y~lS~l~~~~~~~~~ks~k~~~k~l~~i~~~~~~~~~~~~~sl~~~~~~~~~~~~l~~~~~~y~~~~~~~~~~~~~a  380 (608)
T PF10345_consen  301 ALVYFLSGLHNLYKGSMDKSEKFLEKALKQIEKLKIKSPSAPSESLSEASERIQWLRYLQCYLLFYQIWCNFIRGDWSKA  380 (608)
T ss_pred             HHHHHHHHHHHhhccCchHHHHHHHHHHHHHHHhhccCCCCCCcCHHHHHHhHHHHHHHHHHHHHHHHHHHHHCcCHHHH
Confidence            44555567777777777789999999988775432       0111  11223344566677888999999999999999


Q ss_pred             HHHHHHHHhCC---C------CCHHHHHHHHHHHHHcCCHHHHHHHHH
Q 017811          253 IGQCSLVLGED---E------NNVKALFRRGKARAELGQTDAAREDFL  291 (365)
Q Consensus       253 ~~~~~~aL~~~---p------~n~ka~~~~g~a~~~l~~~~~A~~~l~  291 (365)
                      ......+....   |      -.+..+|-.|..+...|+.+.|...|.
T Consensus       381 ~~~l~~~~~~~~~~~~~~~~~~~~~~~yL~gl~~q~~g~l~~A~~~y~  428 (608)
T PF10345_consen  381 TQELEFMRQLCQRSPSKLYESLYPLLHYLLGLYYQSTGDLEAALYQYQ  428 (608)
T ss_pred             HHHHHHHHHHHhcCccchhhhhhHHHHHHHHHHHHHcCCHHHHHHHHh
Confidence            99888776542   2      247789999999999999999999998

It is associated with the cohesin complex and is required in G1 for cohesin binding to chromosomes, but is dispensable in G2 when cohesion has been established. It is often referred to as Ssl3 in Schizosaccharomyces pombe (Fission yeast), and Scc4 in Saccharomyces cerevisiae (Baker's yeast). It complexes with Mis4 [].

>PF07721 TPR_4: Tetratricopeptide repeat; InterPro: IPR011717 This entry includes tetratricopeptide-like repeats not detected by the IPR001440 from INTERPRO, IPR013105 from INTERPRO and IPR011716 from INTERPRO models

Probab=88.04  E-value=0.71  Score=25.81  Aligned_cols=22  Identities=23%  Similarity=0.206  Sum_probs=11.7

Q ss_pred             HHHHHHHHHHHcCCHHHHHHHH
Q 017811          269 ALFRRGKARAELGQTDAAREDF  290 (365)
Q Consensus       269 a~~~~g~a~~~l~~~~~A~~~l  290 (365)
                      +++.+|.++..+|++++|...+
T Consensus         3 a~~~la~~~~~~G~~~eA~~~l   24 (26)
T PF07721_consen    3 ARLALARALLAQGDPDEAERLL   24 (26)
T ss_pred             HHHHHHHHHHHcCCHHHHHHHH
Confidence            4455555555555555555444

The tetratricopeptide repeat (TPR) motif is a protein-protein interaction module found in multiple copies in a number of functionally different proteins that facilitates specific interactions with a partner protein(s) [].; GO: 0042802 identical protein binding

>KOG0530 consensus Protein farnesyltransferase, alpha subunit/protein geranylgeranyltransferase type I, alpha subunit [Posttranslational modification, protein turnover, chaperones]

Probab=87.87  E-value=12  Score=33.98  Aligned_cols=106  Identities=14%  Similarity=0.055  Sum_probs=76.3

Q ss_pred             hhhhhhHHHHHHHHHHHHHhhccchhhhhhhhHHHHHHHhhchhhhHHHHHHHHh-cCHHHHHHHHHHHHhCCCCCHHHH
Q 017811          192 LFKEEKLEEAMQQYEMAIAYMGDDFMFQLFGKYRDMALAVKNPCHLNMAACLLKL-KRYEEAIGQCSLVLGEDENNVKAL  270 (365)
Q Consensus       192 ~~~~~~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~kl-~~~~~A~~~~~~aL~~~p~n~ka~  270 (365)
                      +++..+-.+|+++-..+|.++|.++..                 +.-+=.|.-.+ .+..+-+.+.+.+++-+|.|-..+
T Consensus        53 ~~~~E~S~RAl~LT~d~i~lNpAnYTV-----------------W~yRr~iL~~l~~dL~~El~~l~eI~e~npKNYQvW  115 (318)
T KOG0530|consen   53 IAKNEKSPRALQLTEDAIRLNPANYTV-----------------WQYRRVILRHLMSDLNKELEYLDEIIEDNPKNYQVW  115 (318)
T ss_pred             HhccccCHHHHHHHHHHHHhCcccchH-----------------HHHHHHHHHHhHHHHHHHHHHHHHHHHhCccchhHH
Confidence            345556678999999999999987653                 44444444444 356777788888888888888888


Q ss_pred             HHHHHHHHHcCCHH-HHHHHHHHHHhhCCCcHHHHHHHHHHHHHH
Q 017811          271 FRRGKARAELGQTD-AAREDFLKAGKFAPEDKSIARELRLLAEHE  314 (365)
Q Consensus       271 ~~~g~a~~~l~~~~-~A~~~l~~al~l~P~n~~~~~~l~~l~~~~  314 (365)
                      ..|-.+...+|+.. .-+...+.++..+.+|=.+.+...-+-+.-
T Consensus       116 HHRr~ive~l~d~s~rELef~~~~l~~DaKNYHaWshRqW~~r~F  160 (318)
T KOG0530|consen  116 HHRRVIVELLGDPSFRELEFTKLMLDDDAKNYHAWSHRQWVLRFF  160 (318)
T ss_pred             HHHHHHHHHhcCcccchHHHHHHHHhccccchhhhHHHHHHHHHH
Confidence            88888888888777 677778888888877766665555444333

>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]

Probab=87.86  E-value=12  Score=39.29  Aligned_cols=85  Identities=22%  Similarity=0.194  Sum_probs=60.6

Q ss_pred             hhhHHHHHHHHhcCHHHHHHHHHHH----------HhCCCCC----------HHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 017811          235 CHLNMAACLLKLKRYEEAIGQCSLV----------LGEDENN----------VKALFRRGKARAELGQTDAAREDFLKAG  294 (365)
Q Consensus       235 ~~~nla~~~~kl~~~~~A~~~~~~a----------L~~~p~n----------~ka~~~~g~a~~~l~~~~~A~~~l~~al  294 (365)
                      .|+|.|.-+-..++...|+++|+++          |..+|..          .+.|-+-|+-+...|+.+.|+..|..|-
T Consensus       860 Tyy~yA~~Lear~Di~~AleyyEK~~~hafev~rmL~e~p~~~e~Yv~~~~d~~L~~WWgqYlES~GemdaAl~~Y~~A~  939 (1416)
T KOG3617|consen  860 TYYNYAKYLEARRDIEAALEYYEKAGVHAFEVFRMLKEYPKQIEQYVRRKRDESLYSWWGQYLESVGEMDAALSFYSSAK  939 (1416)
T ss_pred             hHHHHHHHHHhhccHHHHHHHHHhcCChHHHHHHHHHhChHHHHHHHHhccchHHHHHHHHHHhcccchHHHHHHHHHhh
Confidence            4889998888889999999999874          4445543          3455667888888999999999988775


Q ss_pred             hh---------------------CCCcHHHHHHHHHHHHHHHHHHH
Q 017811          295 KF---------------------APEDKSIARELRLLAEHEKAVYK  319 (365)
Q Consensus       295 ~l---------------------~P~n~~~~~~l~~l~~~~~~~~~  319 (365)
                      ..                     ...|..+-..|++-++...+..+
T Consensus       940 D~fs~VrI~C~qGk~~kAa~iA~esgd~AAcYhlaR~YEn~g~v~~  985 (1416)
T KOG3617|consen  940 DYFSMVRIKCIQGKTDKAARIAEESGDKAACYHLARMYENDGDVVK  985 (1416)
T ss_pred             hhhhheeeEeeccCchHHHHHHHhcccHHHHHHHHHHhhhhHHHHH
Confidence            42                     23456666666666655555443

>cd02683 MIT_1 MIT: domain contained within Microtubule Interacting and Trafficking molecules

Probab=87.66  E-value=2.8  Score=30.51  Aligned_cols=35  Identities=23%  Similarity=0.200  Sum_probs=29.6

Q ss_pred             HHHHHhhhhhhhhhhhhhHHHHHHHHHHHHHhhcc
Q 017811          180 GAADRRKMDGNALFKEEKLEEAMQQYEMAIAYMGD  214 (365)
Q Consensus       180 ~~a~~~k~~G~~~~~~~~y~~A~~~y~~al~~~~~  214 (365)
                      ..|..+..+|..+=+.|+|.+|+.+|.+||..+-.
T Consensus         4 ~~a~~l~~~Ave~D~~g~y~eAl~~Y~~aie~l~~   38 (77)
T cd02683           4 LAAKEVLKRAVELDQEGRFQEALVCYQEGIDLLMQ   38 (77)
T ss_pred             HHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHH
Confidence            34667778889999999999999999999988754

This sub-family of MIT domains is found in proteins with unknown function, co-occuring with an as yet undescribed domain. The molecular function of the MIT domain is unclear.

>PF08424 NRDE-2: NRDE-2, necessary for RNA interference; InterPro: IPR013633 This is domain is found in eukaryotic proteins of unknown function

Probab=87.59  E-value=25  Score=33.07  Aligned_cols=62  Identities=10%  Similarity=0.052  Sum_probs=53.7

Q ss_pred             HHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCcHHHHHHHHHH
Q 017811          249 YEEAIGQCSLVLGEDENNVKALFRRGKARAELGQTDAAREDFLKAGKFAPEDKSIARELRLL  310 (365)
Q Consensus       249 ~~~A~~~~~~aL~~~p~n~ka~~~~g~a~~~l~~~~~A~~~l~~al~l~P~n~~~~~~l~~l  310 (365)
                      .+.-+..+++||+.+|++.+-+..+-.+...+.+-++....+++++..+|++..+....-..
T Consensus        47 ~E~klsilerAL~~np~~~~L~l~~l~~~~~~~~~~~l~~~we~~l~~~~~~~~LW~~yL~~  108 (321)
T PF08424_consen   47 AERKLSILERALKHNPDSERLLLGYLEEGEKVWDSEKLAKKWEELLFKNPGSPELWREYLDF  108 (321)
T ss_pred             HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHCCCChHHHHHHHHH
Confidence            45667788889999999999999999999999999999999999999999998887665433

>COG3914 Spy Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones]

Probab=87.55  E-value=6.5  Score=39.54  Aligned_cols=99  Identities=17%  Similarity=0.073  Sum_probs=72.2

Q ss_pred             hhhHHHHHHHHHHHHHhhccchhhhhhhhHHHHHHHhhchhhhHHHHHHHHhcCHHHHH-HHHHHHHhCCCCCHHHHHHH
Q 017811          195 EEKLEEAMQQYEMAIAYMGDDFMFQLFGKYRDMALAVKNPCHLNMAACLLKLKRYEEAI-GQCSLVLGEDENNVKALFRR  273 (365)
Q Consensus       195 ~~~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~kl~~~~~A~-~~~~~aL~~~p~n~ka~~~~  273 (365)
                      .+....|+-....++..+|.+                 ..++.|||.+....|..-.++ ..+..++...|.|...+.-+
T Consensus        80 ~~~~~~~~~~~~~~l~~~~~~-----------------~~~~~~L~~ale~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~  142 (620)
T COG3914          80 LADSTLAFLAKRIPLSVNPEN-----------------CPAVQNLAAALELDGLQFLALADISEIAEWLSPDNAEFLGHL  142 (620)
T ss_pred             cccchhHHHHHhhhHhcCccc-----------------chHHHHHHHHHHHhhhHHHHHHHHHHHHHhcCcchHHHHhhH
Confidence            344445555555555555543                 346888888888777655554 45555899999998877666


Q ss_pred             ------HHHHHHcCCHHHHHHHHHHHHhhCCCcHHHHHHHHHH
Q 017811          274 ------GKARAELGQTDAAREDFLKAGKFAPEDKSIARELRLL  310 (365)
Q Consensus       274 ------g~a~~~l~~~~~A~~~l~~al~l~P~n~~~~~~l~~l  310 (365)
                            ++.+..+++-.++...+.++..+.|.++.+...+...
T Consensus       143 ~~~~~~~~~~~~l~~~~~~~~~l~~~~d~~p~~~~~~~~~~~~  185 (620)
T COG3914         143 IRFYQLGRYLKLLGRTAEAELALERAVDLLPKYPRVLGALMTA  185 (620)
T ss_pred             HHHHHHHHHHHHhccHHHHHHHHHHHHHhhhhhhhhHhHHHHH
Confidence                  8888889999999999999999999997776666544

>COG3914 Spy Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones]

Probab=86.88  E-value=6.2  Score=39.69  Aligned_cols=95  Identities=17%  Similarity=0.066  Sum_probs=74.3

Q ss_pred             HHHHHHHHHHhhccchhhhhhhhHHHHHHHhhchhhhHHHHHHHHhcCHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHc
Q 017811          201 AMQQYEMAIAYMGDDFMFQLFGKYRDMALAVKNPCHLNMAACLLKLKRYEEAIGQCSLVLGEDENNVKALFRRGKARAEL  280 (365)
Q Consensus       201 A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~kl~~~~~A~~~~~~aL~~~p~n~ka~~~~g~a~~~l  280 (365)
                      |+..|...+.+.+.+..+             .. .++ ++..+..++....+......++..+|++..++..+|.++...
T Consensus        50 ~~~a~~~~~~~~~~~~~l-------------ll-a~~-lsi~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~L~~ale~~  114 (620)
T COG3914          50 AIYALLLGIAINDVNPEL-------------LL-AAF-LSILLAPLADSTLAFLAKRIPLSVNPENCPAVQNLAAALELD  114 (620)
T ss_pred             HHHHHHccCccCCCCHHH-------------HH-HHH-HHhhccccccchhHHHHHhhhHhcCcccchHHHHHHHHHHHh
Confidence            566666666665554332             11 123 788888899998999999999999999999999999999999


Q ss_pred             CCHHHHHHHHHH-HHhhCCCcHHHHHHHHHH
Q 017811          281 GQTDAAREDFLK-AGKFAPEDKSIARELRLL  310 (365)
Q Consensus       281 ~~~~~A~~~l~~-al~l~P~n~~~~~~l~~l  310 (365)
                      |..-.+...+.. +....|+|..+...+-.+
T Consensus       115 ~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~  145 (620)
T COG3914         115 GLQFLALADISEIAEWLSPDNAEFLGHLIRF  145 (620)
T ss_pred             hhHHHHHHHHHHHHHhcCcchHHHHhhHHHH
Confidence            888887777766 999999999888777333

>PF07721 TPR_4: Tetratricopeptide repeat; InterPro: IPR011717 This entry includes tetratricopeptide-like repeats not detected by the IPR001440 from INTERPRO, IPR013105 from INTERPRO and IPR011716 from INTERPRO models

Probab=86.28  E-value=1  Score=25.09  Aligned_cols=23  Identities=26%  Similarity=0.192  Sum_probs=20.7

Q ss_pred             hhhHHHHHHHHhcCHHHHHHHHH
Q 017811          235 CHLNMAACLLKLKRYEEAIGQCS  257 (365)
Q Consensus       235 ~~~nla~~~~kl~~~~~A~~~~~  257 (365)
                      +++++|..+..+|++++|...++
T Consensus         3 a~~~la~~~~~~G~~~eA~~~l~   25 (26)
T PF07721_consen    3 ARLALARALLAQGDPDEAERLLR   25 (26)
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHh
Confidence            47899999999999999998775

The tetratricopeptide repeat (TPR) motif is a protein-protein interaction module found in multiple copies in a number of functionally different proteins that facilitates specific interactions with a partner protein(s) [].; GO: 0042802 identical protein binding

>PF10373 EST1_DNA_bind: Est1 DNA/RNA binding domain; InterPro: IPR018834 Est1 is a protein which recruits or activates telomerase at the site of polymerisation [, ]

Probab=86.21  E-value=3.6  Score=37.39  Aligned_cols=62  Identities=15%  Similarity=-0.120  Sum_probs=51.2

Q ss_pred             HHHHHHHHHHhhccchhhhhhhhHHHHHHHhhchhhhHHHHHHHHhcCHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHH
Q 017811          201 AMQQYEMAIAYMGDDFMFQLFGKYRDMALAVKNPCHLNMAACLLKLKRYEEAIGQCSLVLGEDENNVKALFRRGKARAE  279 (365)
Q Consensus       201 A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~kl~~~~~A~~~~~~aL~~~p~n~ka~~~~g~a~~~  279 (365)
                      |..+|.+|+.+.|...                 ..|+.||..+...++.-.|+-+|-++|-..-..+.|.-++...+..
T Consensus         1 A~~~Y~~A~~l~P~~G-----------------~p~nQLAvl~~~~~~~l~avy~y~Rsl~~~~Pf~~A~~NL~~lf~~   62 (278)
T PF10373_consen    1 AERYYRKAIRLLPSNG-----------------NPYNQLAVLASYQGDDLDAVYYYIRSLAVRIPFPSARENLQKLFEK   62 (278)
T ss_dssp             HHHHHHHHHHH-TTBS-----------------HHHHHHHHHHHHTT-HHHHHHHHHHHHSSSB--HHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHhCCCCC-----------------CcccchhhhhccccchHHHHHHHHHHHhcCCCcHHHHHHHHHHHHH
Confidence            7899999999999863                 3499999999999999999999999998776678888888888887

This is the DNA/RNA binding domain of EST1 []. ; PDB: 1YA0_B.

>COG3898 Uncharacterized membrane-bound protein [Function unknown]

Probab=86.20  E-value=9.8  Score=36.58  Aligned_cols=123  Identities=20%  Similarity=0.193  Sum_probs=85.8

Q ss_pred             hhhhhhhhhHHHHHHHHHHHHHhhccchhhhhhhhHHHHHHHhhchhhhHHHHHHHHhcCHHHHHHHHHH---HHhCCCC
Q 017811          189 GNALFKEEKLEEAMQQYEMAIAYMGDDFMFQLFGKYRDMALAVKNPCHLNMAACLLKLKRYEEAIGQCSL---VLGEDEN  265 (365)
Q Consensus       189 G~~~~~~~~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~kl~~~~~A~~~~~~---aL~~~p~  265 (365)
                      +..+|+.|+..++-...+.+-+..|                      |-.++..|....--+.++.-.++   .-.+.|+
T Consensus       270 Aralf~d~~~rKg~~ilE~aWK~eP----------------------HP~ia~lY~~ar~gdta~dRlkRa~~L~slk~n  327 (531)
T COG3898         270 ARALFRDGNLRKGSKILETAWKAEP----------------------HPDIALLYVRARSGDTALDRLKRAKKLESLKPN  327 (531)
T ss_pred             HHHHHhccchhhhhhHHHHHHhcCC----------------------ChHHHHHHHHhcCCCcHHHHHHHHHHHHhcCcc
Confidence            4455566666666655555555554                      34566666666555566665554   4468899


Q ss_pred             CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCCC
Q 017811          266 NVKALFRRGKARAELGQTDAAREDFLKAGKFAPEDKSIARELRLLAEHEKAVYKKQKEIYKGIFGPRPE  334 (365)
Q Consensus       266 n~ka~~~~g~a~~~l~~~~~A~~~l~~al~l~P~n~~~~~~l~~l~~~~~~~~~~~k~~y~kmf~~~~~  334 (365)
                      |....+-++.+-+.-|+|..|...-+.+..+.|.. .+.-.|..+.........+.+....+.+..+.+
T Consensus       328 naes~~~va~aAlda~e~~~ARa~Aeaa~r~~pre-s~~lLlAdIeeAetGDqg~vR~wlAqav~APrd  395 (531)
T COG3898         328 NAESSLAVAEAALDAGEFSAARAKAEAAAREAPRE-SAYLLLADIEEAETGDQGKVRQWLAQAVKAPRD  395 (531)
T ss_pred             chHHHHHHHHHHHhccchHHHHHHHHHHhhhCchh-hHHHHHHHHHhhccCchHHHHHHHHHHhcCCCC
Confidence            99999999999999999999999999999999974 444566666665534445666666666666554

>cd02684 MIT_2 MIT: domain contained within Microtubule Interacting and Trafficking molecules

Probab=86.12  E-value=2.7  Score=30.45  Aligned_cols=36  Identities=14%  Similarity=0.072  Sum_probs=31.0

Q ss_pred             HHHHHHhhhhhhhhhhhhhHHHHHHHHHHHHHhhcc
Q 017811          179 IGAADRRKMDGNALFKEEKLEEAMQQYEMAIAYMGD  214 (365)
Q Consensus       179 ~~~a~~~k~~G~~~~~~~~y~~A~~~y~~al~~~~~  214 (365)
                      ++.|..+..+|...-..|+|++|+.+|..||+.+-.
T Consensus         3 l~~Ai~lv~~Av~~D~~g~y~eA~~lY~~ale~~~~   38 (75)
T cd02684           3 LEKAIALVVQAVKKDQRGDAAAALSLYCSALQYFVP   38 (75)
T ss_pred             HHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHH
Confidence            456777888889999999999999999999998754

This sub-family of MIT domains is found in proteins with an n-terminal serine/threonine kinase domain. The molecular function of the MIT domain is unclear.

>PF10255 Paf67: RNA polymerase I-associated factor PAF67; InterPro: IPR019382 RNA polymerase I is a multi-subunit enzyme and its transcription competence is dependent on the presence of PAF67 []

Probab=85.90  E-value=1.3  Score=42.94  Aligned_cols=60  Identities=13%  Similarity=0.039  Sum_probs=46.4

Q ss_pred             hhHHHHHHHHhcCHHHHHHHHHHHH--------hCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 017811          236 HLNMAACLLKLKRYEEAIGQCSLVL--------GEDENNVKALFRRGKARAELGQTDAAREDFLKAGK  295 (365)
Q Consensus       236 ~~nla~~~~kl~~~~~A~~~~~~aL--------~~~p~n~ka~~~~g~a~~~l~~~~~A~~~l~~al~  295 (365)
                      ..-|..+|.-+|+|..|+...+.+=        ..-+-++..+|..|-||+++++|.+|+..|..+|-
T Consensus       125 ligLlRvh~LLGDY~~Alk~l~~idl~~~~l~~~V~~~~is~~YyvGFaylMlrRY~DAir~f~~iL~  192 (404)
T PF10255_consen  125 LIGLLRVHCLLGDYYQALKVLENIDLNKKGLYTKVPACHISTYYYVGFAYLMLRRYADAIRTFSQILL  192 (404)
T ss_pred             HHHHHHHHHhccCHHHHHHHhhccCcccchhhccCcchheehHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            4566777888999999988765421        12244677999999999999999999999887763

>PF15015 NYD-SP12_N: Spermatogenesis-associated, N-terminal

Probab=85.65  E-value=8  Score=37.45  Aligned_cols=78  Identities=8%  Similarity=0.091  Sum_probs=54.3

Q ss_pred             HHHHHHHHcCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHHHHHHHHHHHHH--hcccCCCCCcccc-chhHHHHHHH
Q 017811          272 RRGKARAELGQTDAAREDFLKAGKFAPEDKSIARELRLLAEHEKAVYKKQKEIY--KGIFGPRPEPKQK-KNWLIIFWQL  348 (365)
Q Consensus       272 ~~g~a~~~l~~~~~A~~~l~~al~l~P~n~~~~~~l~~l~~~~~~~~~~~k~~y--~kmf~~~~~~~~~-~~~~~~~~~~  348 (365)
                      .+..||+.+++-+-|+...-+.+.++|.+..-+-.-+.|.+++..+.++.|...  --||-......|. +.+.++-|+.
T Consensus       233 klv~CYL~~rkpdlALnh~hrsI~lnP~~frnHLrqAavfR~LeRy~eAarSamia~ymywl~g~~~q~~S~lIklyWqa  312 (569)
T PF15015_consen  233 KLVTCYLRMRKPDLALNHSHRSINLNPSYFRNHLRQAAVFRRLERYSEAARSAMIADYMYWLSGGSEQRISKLIKLYWQA  312 (569)
T ss_pred             HHHHhhhhcCCCchHHHHHhhhhhcCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchHhHHHHHHHHHHH
Confidence            577899999999999999999999999865544445667778888887776533  2344444445555 3444444444


Q ss_pred             H
Q 017811          349 L  349 (365)
Q Consensus       349 ~  349 (365)
                      .
T Consensus       313 m  313 (569)
T PF15015_consen  313 M  313 (569)
T ss_pred             H
Confidence            3

>cd02679 MIT_spastin MIT: domain contained within Microtubule Interacting and Trafficking molecules

Probab=85.43  E-value=3.7  Score=30.06  Aligned_cols=68  Identities=12%  Similarity=0.067  Sum_probs=45.6

Q ss_pred             HHHHHHhhhhhhhhhhhhhHHHHHHHHHHHHHhhccchhhh----hhhhHHHHHHHhhchhhhHHHHHHHHh
Q 017811          179 IGAADRRKMDGNALFKEEKLEEAMQQYEMAIAYMGDDFMFQ----LFGKYRDMALAVKNPCHLNMAACLLKL  246 (365)
Q Consensus       179 ~~~a~~~k~~G~~~~~~~~y~~A~~~y~~al~~~~~~~~~~----~~~~~~~~~~~~~~~~~~nla~~~~kl  246 (365)
                      .+.|....+.|-.+=..|+.++|+.+|++++..+......+    -.+...+....+..+.-.|++.+-.++
T Consensus         5 ~~~A~~~I~kaL~~dE~g~~e~Al~~Y~~gi~~l~eg~ai~~~~~~~~~~w~~ar~~~~Km~~~~~~v~~RL   76 (79)
T cd02679           5 YKQAFEEISKALRADEWGDKEQALAHYRKGLRELEEGIAVPVPSAGVGSQWERARRLQQKMKTNLNMVKTRL   76 (79)
T ss_pred             HHHHHHHHHHHhhhhhcCCHHHHHHHHHHHHHHHHHHcCCCCCcccccHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            45677778888888888999999999999999885432221    133445555555555555655554443

This MIT domain sub-family is found in the AAA protein spastin, a probable ATPase involved in the assembly or function of nuclear protein complexes; spastins might also be involved in microtubule dynamics. The molecular function of the MIT domain is unclear.

>KOG2047 consensus mRNA splicing factor [RNA processing and modification]

Probab=85.01  E-value=15  Score=37.52  Aligned_cols=153  Identities=8%  Similarity=0.013  Sum_probs=100.8

Q ss_pred             HHHHHhhhhhhhhhhhhhHHHHHHHHHHHHHhhccchh--hhhhhhHHHHHHHhhchhhhHHHHHHHHhcCHHHHHHHHH
Q 017811          180 GAADRRKMDGNALFKEEKLEEAMQQYEMAIAYMGDDFM--FQLFGKYRDMALAVKNPCHLNMAACLLKLKRYEEAIGQCS  257 (365)
Q Consensus       180 ~~a~~~k~~G~~~~~~~~y~~A~~~y~~al~~~~~~~~--~~~~~~~~~~~~~~~~~~~~nla~~~~kl~~~~~A~~~~~  257 (365)
                      +.+..+-+-|..-++..+++.|+++.++|... |....  +-...+..+....-..+++.-.+-..-.+|-++.....|+
T Consensus       423 dLa~vw~~waemElrh~~~~~Al~lm~~A~~v-P~~~~~~~yd~~~pvQ~rlhrSlkiWs~y~DleEs~gtfestk~vYd  501 (835)
T KOG2047|consen  423 DLAEVWCAWAEMELRHENFEAALKLMRRATHV-PTNPELEYYDNSEPVQARLHRSLKIWSMYADLEESLGTFESTKAVYD  501 (835)
T ss_pred             HHHHHHHHHHHHHHhhhhHHHHHHHHHhhhcC-CCchhhhhhcCCCcHHHHHHHhHHHHHHHHHHHHHhccHHHHHHHHH
Confidence            44566677777778889999999988888754 43311  1011111122111123446666666677788888888888


Q ss_pred             HHHhCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC--CcHHHHHHH--HHHHHHHHHHHHHHHHHHhcccCCCC
Q 017811          258 LVLGEDENNVKALFRRGKARAELGQTDAAREDFLKAGKFAP--EDKSIAREL--RLLAEHEKAVYKKQKEIYKGIFGPRP  333 (365)
Q Consensus       258 ~aL~~~p~n~ka~~~~g~a~~~l~~~~~A~~~l~~al~l~P--~n~~~~~~l--~~l~~~~~~~~~~~k~~y~kmf~~~~  333 (365)
                      ++|.+.=-.+....+.|.-+..-..|++|.+.|++.+.|.|  +--+++...  +.+.+-.+...+..|.+|...++.=|
T Consensus       502 riidLriaTPqii~NyAmfLEeh~yfeesFk~YErgI~LFk~p~v~diW~tYLtkfi~rygg~klEraRdLFEqaL~~Cp  581 (835)
T KOG2047|consen  502 RIIDLRIATPQIIINYAMFLEEHKYFEESFKAYERGISLFKWPNVYDIWNTYLTKFIKRYGGTKLERARDLFEQALDGCP  581 (835)
T ss_pred             HHHHHhcCCHHHHHHHHHHHHhhHHHHHHHHHHHcCCccCCCccHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHhcCC
Confidence            88888888888888888888888888888888888888764  334444332  23333344556778888888887544

>COG2912 Uncharacterized conserved protein [Function unknown]

Probab=85.01  E-value=3.9  Score=37.24  Aligned_cols=72  Identities=18%  Similarity=0.096  Sum_probs=60.8

Q ss_pred             hhhhhhhhhhHHHHHHHHHHHHHhhccchhhhhhhhHHHHHHHhhchhhhHHHHHHHHhcCHHHHHHHHHHHHhCCCCCH
Q 017811          188 DGNALFKEEKLEEAMQQYEMAIAYMGDDFMFQLFGKYRDMALAVKNPCHLNMAACLLKLKRYEEAIGQCSLVLGEDENNV  267 (365)
Q Consensus       188 ~G~~~~~~~~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~kl~~~~~A~~~~~~aL~~~p~n~  267 (365)
                      .=+.+...+++..|...-.+.+.++|.++.-                 .--+|.+|.++|.+.-|+.++..-++..|+.+
T Consensus       187 lk~~~~~e~~~~~al~~~~r~l~l~P~dp~e-----------------irDrGliY~ql~c~~vAl~dl~~~~~~~P~~~  249 (269)
T COG2912         187 LKAALLRELQWELALRVAERLLDLNPEDPYE-----------------IRDRGLIYAQLGCYHVALEDLSYFVEHCPDDP  249 (269)
T ss_pred             HHHHHHHhhchHHHHHHHHHHHhhCCCChhh-----------------ccCcHHHHHhcCCchhhHHHHHHHHHhCCCch
Confidence            3346778899999999999999999987532                 56889999999999999999999999999988


Q ss_pred             HHHHHHHHH
Q 017811          268 KALFRRGKA  276 (365)
Q Consensus       268 ka~~~~g~a  276 (365)
                      .+-.-+++.
T Consensus       250 ~a~~ir~~l  258 (269)
T COG2912         250 IAEMIRAQL  258 (269)
T ss_pred             HHHHHHHHH
Confidence            877665554

>KOG1550 consensus Extracellular protein SEL-1 and related proteins [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]

Probab=84.80  E-value=14  Score=37.78  Aligned_cols=103  Identities=19%  Similarity=0.110  Sum_probs=75.0

Q ss_pred             hhhhHHHHHHHHHHHHHhhccchhhhhhhhHHHHHHHhhchhhhHHHHHHHHhc-----CHHHHHHHHHHHHhCCCCCHH
Q 017811          194 KEEKLEEAMQQYEMAIAYMGDDFMFQLFGKYRDMALAVKNPCHLNMAACLLKLK-----RYEEAIGQCSLVLGEDENNVK  268 (365)
Q Consensus       194 ~~~~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~kl~-----~~~~A~~~~~~aL~~~p~n~k  268 (365)
                      ..++.+.|+..|..|..-...            ........+.+.+|.||++-.     ++..|+..+.++-.+.  ++.
T Consensus       261 ~~~d~e~a~~~l~~aa~~~~~------------~a~~~~~~a~~~lg~~Y~~g~~~~~~d~~~A~~~~~~aA~~g--~~~  326 (552)
T KOG1550|consen  261 VTQDLESAIEYLKLAAESFKK------------AATKGLPPAQYGLGRLYLQGLGVEKIDYEKALKLYTKAAELG--NPD  326 (552)
T ss_pred             ccccHHHHHHHHHHHHHHHHH------------HHhhcCCccccHHHHHHhcCCCCccccHHHHHHHHHHHHhcC--Cch
Confidence            346888899998888773100            000112335889999999843     6788999999988775  788


Q ss_pred             HHHHHHHHHHHcC---CHHHHHHHHHHHHhhCCCcHHHHHHHHHHHH
Q 017811          269 ALFRRGKARAELG---QTDAAREDFLKAGKFAPEDKSIARELRLLAE  312 (365)
Q Consensus       269 a~~~~g~a~~~l~---~~~~A~~~l~~al~l~P~n~~~~~~l~~l~~  312 (365)
                      +.|++|.++..-.   ++..|..+|..|...  .+..+...+..|..
T Consensus       327 a~~~lg~~~~~g~~~~d~~~A~~yy~~Aa~~--G~~~A~~~la~~y~  371 (552)
T KOG1550|consen  327 AQYLLGVLYETGTKERDYRRAFEYYSLAAKA--GHILAIYRLALCYE  371 (552)
T ss_pred             HHHHHHHHHHcCCccccHHHHHHHHHHHHHc--CChHHHHHHHHHHH
Confidence            9999999999877   678999999998864  44566666666644

>COG0790 FOG: TPR repeat, SEL1 subfamily [General function prediction only]

Probab=84.71  E-value=23  Score=32.48  Aligned_cols=104  Identities=14%  Similarity=-0.001  Sum_probs=74.3

Q ss_pred             hhhhhhhhhh----hhhHHHHHHHHHHHHHhhccchhhhhhhhHHHHHHHhhchhhhHHHHHHHHh-----c--CHHHHH
Q 017811          185 RKMDGNALFK----EEKLEEAMQQYEMAIAYMGDDFMFQLFGKYRDMALAVKNPCHLNMAACLLKL-----K--RYEEAI  253 (365)
Q Consensus       185 ~k~~G~~~~~----~~~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~kl-----~--~~~~A~  253 (365)
                      ....|..++.    ..++.+|...|.+|...-....                ..+.++++.+|..-     -  +...|+
T Consensus       112 ~~~lg~~~~~G~gv~~d~~~A~~~~~~Aa~~g~~~a----------------~~~~~~l~~~~~~g~~~~~~~~~~~~A~  175 (292)
T COG0790         112 LFNLGLMYANGRGVPLDLVKALKYYEKAAKLGNVEA----------------ALAMYRLGLAYLSGLQALAVAYDDKKAL  175 (292)
T ss_pred             HHhHHHHHhcCCCcccCHHHHHHHHHHHHHcCChhH----------------HHHHHHHHHHHHcChhhhcccHHHHhHH
Confidence            3445555554    4589999999999988743321                11256777777653     1  233788


Q ss_pred             HHHHHHHhCCCCCHHHHHHHHHHHHH----cCCHHHHHHHHHHHHhhCCCcHHHHHHHH
Q 017811          254 GQCSLVLGEDENNVKALFRRGKARAE----LGQTDAAREDFLKAGKFAPEDKSIARELR  308 (365)
Q Consensus       254 ~~~~~aL~~~p~n~ka~~~~g~a~~~----l~~~~~A~~~l~~al~l~P~n~~~~~~l~  308 (365)
                      ..+.++-...  +..+.+++|.+|..    -.++.+|..+|.++.+...  ......+.
T Consensus       176 ~~~~~aa~~~--~~~a~~~lg~~y~~G~Gv~~d~~~A~~wy~~Aa~~g~--~~a~~~~~  230 (292)
T COG0790         176 YLYRKAAELG--NPDAQLLLGRMYEKGLGVPRDLKKAFRWYKKAAEQGD--GAACYNLG  230 (292)
T ss_pred             HHHHHHHHhc--CHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHHCCC--HHHHHHHH
Confidence            8888887766  89999999988866    3478999999999999876  55555555

>KOG2422 consensus Uncharacterized conserved protein [Function unknown]

Probab=84.58  E-value=36  Score=34.41  Aligned_cols=88  Identities=15%  Similarity=0.219  Sum_probs=53.5

Q ss_pred             HHHHHHHHHHhhhhhhhhhhhhhHHHHHHHHHHHHHhh--ccch--hhhh-hhhHHHHHHHhhchhhhHHHHHHHHhcCH
Q 017811          175 VEERIGAADRRKMDGNALFKEEKLEEAMQQYEMAIAYM--GDDF--MFQL-FGKYRDMALAVKNPCHLNMAACLLKLKRY  249 (365)
Q Consensus       175 ~~e~~~~a~~~k~~G~~~~~~~~y~~A~~~y~~al~~~--~~~~--~~~~-~~~~~~~~~~~~~~~~~nla~~~~kl~~~  249 (365)
                      ++-.+..|...+..|..-+..+-..+|+-.+.+|+.-.  |...  ..+. -.+.+..     -.+++.--....+.|.|
T Consensus       284 vdsLLqva~~~r~qgD~e~aadLieR~Ly~~d~a~hp~F~~~sg~cRL~y~~~eNR~F-----yL~l~r~m~~l~~RGC~  358 (665)
T KOG2422|consen  284 VDSLLQVADIFRFQGDREMAADLIERGLYVFDRALHPNFIPFSGNCRLPYIYPENRQF-----YLALFRYMQSLAQRGCW  358 (665)
T ss_pred             hhHHHHHHHHHHHhcchhhHHHHHHHHHHHHHHHhccccccccccccCcccchhhHHH-----HHHHHHHHHHHHhcCCh
Confidence            34566777777777777777777777777777776432  1100  0000 0111111     11233334455678999


Q ss_pred             HHHHHHHHHHHhCCCC-CH
Q 017811          250 EEAIGQCSLVLGEDEN-NV  267 (365)
Q Consensus       250 ~~A~~~~~~aL~~~p~-n~  267 (365)
                      .-|.++|+..|.++|. ++
T Consensus       359 rTA~E~cKlllsLdp~eDP  377 (665)
T KOG2422|consen  359 RTALEWCKLLLSLDPSEDP  377 (665)
T ss_pred             HHHHHHHHHHhhcCCcCCc
Confidence            9999999999999997 44

>PF08424 NRDE-2: NRDE-2, necessary for RNA interference; InterPro: IPR013633 This is domain is found in eukaryotic proteins of unknown function

Probab=84.25  E-value=8  Score=36.44  Aligned_cols=80  Identities=13%  Similarity=0.090  Sum_probs=60.7

Q ss_pred             HHHHHHHhCCCCCHHHHHHHHHHHHHcCC------------HHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHHHHHHHHH
Q 017811          254 GQCSLVLGEDENNVKALFRRGKARAELGQ------------TDAAREDFLKAGKFAPEDKSIARELRLLAEHEKAVYKKQ  321 (365)
Q Consensus       254 ~~~~~aL~~~p~n~ka~~~~g~a~~~l~~------------~~~A~~~l~~al~l~P~n~~~~~~l~~l~~~~~~~~~~~  321 (365)
                      .-+++.+..+|.++.+|..+....-.+-.            .+.-+..|++||+.+|++..+...+-.+....- ..++.
T Consensus         6 ~el~~~v~~~P~di~~Wl~li~~Qd~~~~~~~~~~~~~~a~~E~klsilerAL~~np~~~~L~l~~l~~~~~~~-~~~~l   84 (321)
T PF08424_consen    6 AELNRRVRENPHDIEAWLELIEFQDELFRLQSSSKAERRALAERKLSILERALKHNPDSERLLLGYLEEGEKVW-DSEKL   84 (321)
T ss_pred             HHHHHHHHhCcccHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhC-CHHHH
Confidence            34778899999999999999876666543            467788999999999999888777666655444 33445


Q ss_pred             HHHHhcccCCCCC
Q 017811          322 KEIYKGIFGPRPE  334 (365)
Q Consensus       322 k~~y~kmf~~~~~  334 (365)
                      .+.+++++...+.
T Consensus        85 ~~~we~~l~~~~~   97 (321)
T PF08424_consen   85 AKKWEELLFKNPG   97 (321)
T ss_pred             HHHHHHHHHHCCC
Confidence            6668888877664

>COG3898 Uncharacterized membrane-bound protein [Function unknown]

Probab=83.97  E-value=17  Score=34.95  Aligned_cols=71  Identities=18%  Similarity=-0.026  Sum_probs=57.5

Q ss_pred             hhhHHHHHHHHhcCHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCcHHHHHHH
Q 017811          235 CHLNMAACLLKLKRYEEAIGQCSLVLGEDENNVKALFRRGKARAELGQTDAAREDFLKAGKFAPEDKSIAREL  307 (365)
Q Consensus       235 ~~~nla~~~~kl~~~~~A~~~~~~aL~~~p~n~ka~~~~g~a~~~l~~~~~A~~~l~~al~l~P~n~~~~~~l  307 (365)
                      ++.-.|...+ --+...|..+...++++.|+-+-+-.--+.+|+..|+..++-..++.+-+.+|. +++....
T Consensus       232 LLtAkA~s~l-dadp~~Ar~~A~~a~KL~pdlvPaav~AAralf~d~~~rKg~~ilE~aWK~ePH-P~ia~lY  302 (531)
T COG3898         232 LLTAKAMSLL-DADPASARDDALEANKLAPDLVPAAVVAARALFRDGNLRKGSKILETAWKAEPH-PDIALLY  302 (531)
T ss_pred             HHHHHHHHHh-cCChHHHHHHHHHHhhcCCccchHHHHHHHHHHhccchhhhhhHHHHHHhcCCC-hHHHHHH
Confidence            3444444443 236889999999999999999999999999999999999999999999999986 4444443

>PF10345 Cohesin_load: Cohesin loading factor; InterPro: IPR019440 Cohesin loading factor is a conserved protein that has been characterised in fungi

Probab=83.63  E-value=28  Score=35.95  Aligned_cols=117  Identities=20%  Similarity=0.157  Sum_probs=85.2

Q ss_pred             HHHHHhhhhhhhhhh-hhhHHHHHHHHHHHHHhhccchhhhhhhhHHHHHHHhhchhhhHHHHHHHHhcCHHHHHHHHHH
Q 017811          180 GAADRRKMDGNALFK-EEKLEEAMQQYEMAIAYMGDDFMFQLFGKYRDMALAVKNPCHLNMAACLLKLKRYEEAIGQCSL  258 (365)
Q Consensus       180 ~~a~~~k~~G~~~~~-~~~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~kl~~~~~A~~~~~~  258 (365)
                      ..|......|..++. -.++++|..+..+++.+...+ .+          .+++-.+.+-++.++.+.+... |...+++
T Consensus        57 ~ea~~~l~la~iL~~eT~n~~~Ae~~L~k~~~l~~~~-~~----------~d~k~~~~~ll~~i~~~~~~~~-a~~~l~~  124 (608)
T PF10345_consen   57 QEARVRLRLASILLEETENLDLAETYLEKAILLCERH-RL----------TDLKFRCQFLLARIYFKTNPKA-ALKNLDK  124 (608)
T ss_pred             HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcccc-ch----------HHHHHHHHHHHHHHHHhcCHHH-HHHHHHH
Confidence            457778888998884 688999999999999988652 21          3344555667789998888777 9999999


Q ss_pred             HHhCCCC----CHHHHHHHHHHHHH--cCCHHHHHHHHHHHHhhC--CCcHHHHHHHH
Q 017811          259 VLGEDEN----NVKALFRRGKARAE--LGQTDAAREDFLKAGKFA--PEDKSIARELR  308 (365)
Q Consensus       259 aL~~~p~----n~ka~~~~g~a~~~--l~~~~~A~~~l~~al~l~--P~n~~~~~~l~  308 (365)
                      .++.-..    .+.-.||+-++...  .+++..|+..++....+.  +.++.+.-.+.
T Consensus       125 ~I~~~~~~~~~~w~~~frll~~~l~~~~~d~~~Al~~L~~~~~~a~~~~d~~~~v~~~  182 (608)
T PF10345_consen  125 AIEDSETYGHSAWYYAFRLLKIQLALQHKDYNAALENLQSIAQLANQRGDPAVFVLAS  182 (608)
T ss_pred             HHHHHhccCchhHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhhhcCCHHHHHHHH
Confidence            9876544    45555565544332  369999999999998876  46665554433

It is associated with the cohesin complex and is required in G1 for cohesin binding to chromosomes, but is dispensable in G2 when cohesion has been established. It is often referred to as Ssl3 in Schizosaccharomyces pombe (Fission yeast), and Scc4 in Saccharomyces cerevisiae (Baker's yeast). It complexes with Mis4 [].

>KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport]

Probab=83.46  E-value=11  Score=40.59  Aligned_cols=105  Identities=15%  Similarity=0.106  Sum_probs=78.8

Q ss_pred             hhhhhhhhhhhhhHHHHHHHHHHHHHhhccchhhhhhhhHHHHHHHhhchhhhHHHHHHHHhcCHHHHHHHHHHHHhCCC
Q 017811          185 RKMDGNALFKEEKLEEAMQQYEMAIAYMGDDFMFQLFGKYRDMALAVKNPCHLNMAACLLKLKRYEEAIGQCSLVLGEDE  264 (365)
Q Consensus       185 ~k~~G~~~~~~~~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~kl~~~~~A~~~~~~aL~~~p  264 (365)
                      ....|+.+|..+.|+.|.-+|...-.                         +..||..+..+|+|+.|.+..++|-....
T Consensus      1197 i~~vGdrcf~~~~y~aAkl~y~~vSN-------------------------~a~La~TLV~LgeyQ~AVD~aRKAns~kt 1251 (1666)
T KOG0985|consen 1197 IQQVGDRCFEEKMYEAAKLLYSNVSN-------------------------FAKLASTLVYLGEYQGAVDAARKANSTKT 1251 (1666)
T ss_pred             HHHHhHHHhhhhhhHHHHHHHHHhhh-------------------------HHHHHHHHHHHHHHHHHHHHhhhccchhH
Confidence            44578889999999988888865322                         67889999999999999999888754331


Q ss_pred             C-------------------------CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHH
Q 017811          265 N-------------------------NVKALFRRGKARAELGQTDAAREDFLKAGKFAPEDKSIARELRLLAEHE  314 (365)
Q Consensus       265 ~-------------------------n~ka~~~~g~a~~~l~~~~~A~~~l~~al~l~P~n~~~~~~l~~l~~~~  314 (365)
                      .                         ++.-+-.+-.-|...|-|++-+..++.+|.++--+-.+..+|+.++.+-
T Consensus      1252 WK~VcfaCvd~~EFrlAQiCGL~iivhadeLeeli~~Yq~rGyFeElIsl~Ea~LGLERAHMgmfTELaiLYsky 1326 (1666)
T KOG0985|consen 1252 WKEVCFACVDKEEFRLAQICGLNIIVHADELEELIEYYQDRGYFEELISLLEAGLGLERAHMGMFTELAILYSKY 1326 (1666)
T ss_pred             HHHHHHHHhchhhhhHHHhcCceEEEehHhHHHHHHHHHhcCcHHHHHHHHHhhhchhHHHHHHHHHHHHHHHhc
Confidence            1                         1112233445577789999999999999999887777788888887654

>PF14863 Alkyl_sulf_dimr: Alkyl sulfatase dimerisation; PDB: 2YHE_C 2CG2_A 2CG3_A 2CFU_A 2CFZ_A

Probab=83.31  E-value=7.4  Score=31.94  Aligned_cols=49  Identities=22%  Similarity=0.140  Sum_probs=29.3

Q ss_pred             hhhHHHHHHHHhcCHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHcCCH
Q 017811          235 CHLNMAACLLKLKRYEEAIGQCSLVLGEDENNVKALFRRGKARAELGQT  283 (365)
Q Consensus       235 ~~~nla~~~~kl~~~~~A~~~~~~aL~~~p~n~ka~~~~g~a~~~l~~~  283 (365)
                      ..+.+|...+..|+|.-|+..++.++..+|+|..|..-++.+|.+++.-
T Consensus        72 ~vl~~A~~~~~~gd~~wA~~L~d~l~~adp~n~~ar~l~A~al~~lg~~  120 (141)
T PF14863_consen   72 KVLERAQAALAAGDYQWAAELLDHLVFADPDNEEARQLKADALEQLGYQ  120 (141)
T ss_dssp             HHHHHHHHHHHCT-HHHHHHHHHHHHHH-TT-HHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHh
Confidence            3455666666666666666666666666666666666666666665543

>TIGR03504 FimV_Cterm FimV C-terminal domain

Probab=83.22  E-value=1.9  Score=27.68  Aligned_cols=27  Identities=22%  Similarity=0.281  Sum_probs=24.7

Q ss_pred             hhHHHHHHHHhcCHHHHHHHHHHHHhC
Q 017811          236 HLNMAACLLKLKRYEEAIGQCSLVLGE  262 (365)
Q Consensus       236 ~~nla~~~~kl~~~~~A~~~~~~aL~~  262 (365)
                      .++||.+|+.+|+++.|....+.++..
T Consensus         2 kLdLA~ayie~Gd~e~Ar~lL~evl~~   28 (44)
T TIGR03504         2 KLDLARAYIEMGDLEGARELLEEVIEE   28 (44)
T ss_pred             chHHHHHHHHcCChHHHHHHHHHHHHc
Confidence            478999999999999999999999953

This protein is found at the extreme C-terminus of FimV from Pseudomonas aeruginosa, and of TspA of Neisseria meningitidis. Disruption of the former blocks twitching motility from type IV pili; Semmler, et al. suggest a role in peptidoglycan layer remodelling required by type IV fimbrial systems.

>PF04781 DUF627: Protein of unknown function (DUF627); InterPro: IPR006866 This domain represents the N-terminal region of several plant proteins of unknown function

Probab=83.19  E-value=20  Score=28.04  Aligned_cols=85  Identities=15%  Similarity=0.030  Sum_probs=60.8

Q ss_pred             HHHHHHHhcCHHHHHHHHHHHHhCCCCCH---HHHHHHHHHHHHcCC-----------HHHHHHHHHHHHhhCCCcHHHH
Q 017811          239 MAACLLKLKRYEEAIGQCSLVLGEDENNV---KALFRRGKARAELGQ-----------TDAAREDFLKAGKFAPEDKSIA  304 (365)
Q Consensus       239 la~~~~kl~~~~~A~~~~~~aL~~~p~n~---ka~~~~g~a~~~l~~-----------~~~A~~~l~~al~l~P~n~~~~  304 (365)
                      +|.-++..|++-+|+...+..+...+++.   -.+...|.++..+..           .-.|+..|.++..+.|......
T Consensus         2 ~A~~~~~rGnhiKAL~iied~i~~h~~~~~~~~lh~~QG~if~~lA~~ten~d~k~~yLl~sve~~s~a~~Lsp~~A~~L   81 (111)
T PF04781_consen    2 KAKDYFARGNHIKALEIIEDLISRHGEDESSWLLHRLQGTIFYKLAKKTENPDVKFRYLLGSVECFSRAVELSPDSAHSL   81 (111)
T ss_pred             hHHHHHHccCHHHHHHHHHHHHHHccCCCchHHHHHHHhHHHHHHHHhccCchHHHHHHHHhHHHHHHHhccChhHHHHH
Confidence            56788899999999999999998877766   455567777776644           3568899999999999876555


Q ss_pred             HHHHHHHHHHHHHHHHHHH
Q 017811          305 RELRLLAEHEKAVYKKQKE  323 (365)
Q Consensus       305 ~~l~~l~~~~~~~~~~~k~  323 (365)
                      .+++.-.....-|++..++
T Consensus        82 ~~la~~l~s~~~Ykk~v~k  100 (111)
T PF04781_consen   82 FELASQLGSVKYYKKAVKK  100 (111)
T ss_pred             HHHHHHhhhHHHHHHHHHH
Confidence            5555432334444444443

>cd02677 MIT_SNX15 MIT: domain contained within Microtubule Interacting and Trafficking molecules

Probab=83.04  E-value=6.6  Score=28.42  Aligned_cols=36  Identities=14%  Similarity=0.064  Sum_probs=30.2

Q ss_pred             HHHHHHhhhhhhhhhhhhhHHHHHHHHHHHHHhhcc
Q 017811          179 IGAADRRKMDGNALFKEEKLEEAMQQYEMAIAYMGD  214 (365)
Q Consensus       179 ~~~a~~~k~~G~~~~~~~~y~~A~~~y~~al~~~~~  214 (365)
                      +..|..+..+|...-..|+|.+|+.+|..+|+.+-.
T Consensus         3 l~~A~~l~~~Ave~d~~~~y~eA~~~Y~~~i~~~~~   38 (75)
T cd02677           3 LEQAAELIRLALEKEEEGDYEAAFEFYRAGVDLLLK   38 (75)
T ss_pred             HHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHH
Confidence            345667777888888999999999999999998754

This MIT domain sub-family is found in sorting nexin 15 and related proteins. The molecular function of the MIT domain is unclear.

>PF07720 TPR_3: Tetratricopeptide repeat; InterPro: IPR011716 This entry includes tetratricopeptide-like repeats found in the LcrH/SycD-like chaperones []

Probab=82.93  E-value=2.4  Score=25.92  Aligned_cols=31  Identities=23%  Similarity=0.304  Sum_probs=24.7

Q ss_pred             hhHHHHHHHHhcCHHHHHHH--HHHHHhCCCCC
Q 017811          236 HLNMAACLLKLKRYEEAIGQ--CSLVLGEDENN  266 (365)
Q Consensus       236 ~~nla~~~~kl~~~~~A~~~--~~~aL~~~p~n  266 (365)
                      +..+|.++...|++++|+..  +.-+..+++.|
T Consensus         4 ~y~~a~~~y~~~ky~~A~~~~~y~~l~~ld~~n   36 (36)
T PF07720_consen    4 LYGLAYNFYQKGKYDEAIHFFQYAFLCALDKYN   36 (36)
T ss_dssp             HHHHHHHHHHTT-HHHHHHHHHHHHHHHHTTT-
T ss_pred             HHHHHHHHHHHhhHHHHHHHHHHHHHHHhcccC
Confidence            56789999999999999999  55888887765

; PDB: 3KS2_O 3GZ2_A 3GZ1_A 3GYZ_A 4AM9_A 2VGX_A 2VGY_A.

>cd02680 MIT_calpain7_2 MIT: domain contained within Microtubule Interacting and Trafficking molecules

Probab=82.92  E-value=2.3  Score=30.75  Aligned_cols=35  Identities=17%  Similarity=0.058  Sum_probs=29.9

Q ss_pred             HHHHHhhhhhhhhhhhhhHHHHHHHHHHHHHhhcc
Q 017811          180 GAADRRKMDGNALFKEEKLEEAMQQYEMAIAYMGD  214 (365)
Q Consensus       180 ~~a~~~k~~G~~~~~~~~y~~A~~~y~~al~~~~~  214 (365)
                      +.|..+..+|...=..|+|++|+.+|..||+++-.
T Consensus         4 ~kai~Lv~~A~~eD~~gny~eA~~lY~~ale~~~~   38 (75)
T cd02680           4 ERAHFLVTQAFDEDEKGNAEEAIELYTEAVELCIN   38 (75)
T ss_pred             HHHHHHHHHHHHhhHhhhHHHHHHHHHHHHHHHHH
Confidence            45677778888888999999999999999998744

This sub-family of MIT domains is found in the nuclear thiol protease PalBH. The molecular function of the MIT domain is unclear.

>TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK

Probab=82.65  E-value=11  Score=31.31  Aligned_cols=65  Identities=14%  Similarity=-0.146  Sum_probs=30.0

Q ss_pred             hcCHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCcHHHHHHHHHH
Q 017811          246 LKRYEEAIGQCSLVLGEDENNVKALFRRGKARAELGQTDAAREDFLKAGKFAPEDKSIARELRLL  310 (365)
Q Consensus       246 l~~~~~A~~~~~~aL~~~p~n~ka~~~~g~a~~~l~~~~~A~~~l~~al~l~P~n~~~~~~l~~l  310 (365)
                      ..+++.+.......=-+.|+++..-..-|..++..|+|.+|+..|+...+-.+..+-....+..|
T Consensus        23 ~~d~~D~e~lLdALrvLrP~~~e~d~~dg~l~i~rg~w~eA~rvlr~l~~~~~~~p~~kAL~A~C   87 (153)
T TIGR02561        23 SADPYDAQAMLDALRVLRPNLKELDMFDGWLLIARGNYDEAARILRELLSSAGAPPYGKALLALC   87 (153)
T ss_pred             cCCHHHHHHHHHHHHHhCCCccccchhHHHHHHHcCCHHHHHHHHHhhhccCCCchHHHHHHHHH
Confidence            44444444444433344454444444445555555555555555544444444434444444444

This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.

>PF14863 Alkyl_sulf_dimr: Alkyl sulfatase dimerisation; PDB: 2YHE_C 2CG2_A 2CG3_A 2CFU_A 2CFZ_A

Probab=81.71  E-value=2.9  Score=34.32  Aligned_cols=54  Identities=13%  Similarity=0.010  Sum_probs=44.4

Q ss_pred             CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHHHHHH
Q 017811          265 NNVKALFRRGKARAELGQTDAAREDFLKAGKFAPEDKSIARELRLLAEHEKAVY  318 (365)
Q Consensus       265 ~n~ka~~~~g~a~~~l~~~~~A~~~l~~al~l~P~n~~~~~~l~~l~~~~~~~~  318 (365)
                      ........+++..+..|+|.-|...+..++..+|+|..++.....+...+....
T Consensus        68 GG~d~vl~~A~~~~~~gd~~wA~~L~d~l~~adp~n~~ar~l~A~al~~lg~~~  121 (141)
T PF14863_consen   68 GGADKVLERAQAALAAGDYQWAAELLDHLVFADPDNEEARQLKADALEQLGYQS  121 (141)
T ss_dssp             TCHHHHHHHHHHHHHCT-HHHHHHHHHHHHHH-TT-HHHHHHHHHHHHHHHHH-
T ss_pred             CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHhc
Confidence            466788889999999999999999999999999999999999988877776653

>PF07163 Pex26: Pex26 protein; InterPro: IPR010797 This family consists of Pex26 and related mammalian proteins

Probab=81.39  E-value=38  Score=31.16  Aligned_cols=30  Identities=13%  Similarity=0.288  Sum_probs=24.1

Q ss_pred             hhhhhhhhhhhhHHHHHHHHHHHHHhhccc
Q 017811          186 KMDGNALFKEEKLEEAMQQYEMAIAYMGDD  215 (365)
Q Consensus       186 k~~G~~~~~~~~y~~A~~~y~~al~~~~~~  215 (365)
                      -+.+..++-..+|..|+..++++++.+..+
T Consensus        39 e~Aad~LvV~rdF~aal~tCerglqsL~~~   68 (309)
T PF07163_consen   39 EEAADLLVVHRDFQAALETCERGLQSLASD   68 (309)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence            344566777899999999999999998543

Pex26 is a type II peroxisomal membrane protein that recruits Pex6-Pex1 complexes to peroxisomes []. Mutations in Pex26 can lead to human disorders [].; GO: 0032403 protein complex binding, 0045046 protein import into peroxisome membrane, 0005779 integral to peroxisomal membrane

>cd02678 MIT_VPS4 MIT: domain contained within Microtubule Interacting and Trafficking molecules

Probab=81.34  E-value=2.7  Score=30.31  Aligned_cols=35  Identities=20%  Similarity=0.177  Sum_probs=30.6

Q ss_pred             HHHHHHhhhhhhhhhhhhhHHHHHHHHHHHHHhhc
Q 017811          179 IGAADRRKMDGNALFKEEKLEEAMQQYEMAIAYMG  213 (365)
Q Consensus       179 ~~~a~~~k~~G~~~~~~~~y~~A~~~y~~al~~~~  213 (365)
                      ++.|..+..+|...-..|+|.+|+.+|..|++.+-
T Consensus         3 ~~~A~~l~~~Av~~D~~g~y~eA~~~Y~~aie~l~   37 (75)
T cd02678           3 LQKAIELVKKAIEEDNAGNYEEALRLYQHALEYFM   37 (75)
T ss_pred             HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH
Confidence            45677888889999999999999999999998874

This sub-family of MIT domains is found in intracellular protein transport proteins of the AAA-ATPase family. The molecular function of the MIT domain is unclear.

>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]

Probab=81.16  E-value=13  Score=39.21  Aligned_cols=63  Identities=16%  Similarity=0.121  Sum_probs=51.5

Q ss_pred             hhhhHHHHHHHHhcCHHHHHHHHHHHH---------------------hCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 017811          234 PCHLNMAACLLKLKRYEEAIGQCSLVL---------------------GEDENNVKALFRRGKARAELGQTDAAREDFLK  292 (365)
Q Consensus       234 ~~~~nla~~~~kl~~~~~A~~~~~~aL---------------------~~~p~n~ka~~~~g~a~~~l~~~~~A~~~l~~  292 (365)
                      ++|..-|...-..|+.+.|+.+|..|-                     .....+-.|-|.+|+.|...|++.+|+..|.+
T Consensus       913 ~L~~WWgqYlES~GemdaAl~~Y~~A~D~fs~VrI~C~qGk~~kAa~iA~esgd~AAcYhlaR~YEn~g~v~~Av~FfTr  992 (1416)
T KOG3617|consen  913 SLYSWWGQYLESVGEMDAALSFYSSAKDYFSMVRIKCIQGKTDKAARIAEESGDKAACYHLARMYENDGDVVKAVKFFTR  992 (1416)
T ss_pred             HHHHHHHHHHhcccchHHHHHHHHHhhhhhhheeeEeeccCchHHHHHHHhcccHHHHHHHHHHhhhhHHHHHHHHHHHH
Confidence            467777888888999999999888653                     22456777999999999999999999998887


Q ss_pred             HHhh
Q 017811          293 AGKF  296 (365)
Q Consensus       293 al~l  296 (365)
                      |..+
T Consensus       993 Aqaf  996 (1416)
T KOG3617|consen  993 AQAF  996 (1416)
T ss_pred             HHHH
Confidence            7554

>KOG1839 consensus Uncharacterized protein CLU1/cluA/TIF31 involved in mitochondrial morphology/distribution, also found associated with eIF-3 [General function prediction only]

Probab=80.55  E-value=22  Score=39.18  Aligned_cols=110  Identities=12%  Similarity=-0.057  Sum_probs=82.7

Q ss_pred             HHHHHHhhhhhhhhhhhhhHHHHHHHHHHHHHhhccchhhhhhhhHHHHHHHhhchhhhHHHHHHHHhcCHHHHHHHHHH
Q 017811          179 IGAADRRKMDGNALFKEEKLEEAMQQYEMAIAYMGDDFMFQLFGKYRDMALAVKNPCHLNMAACLLKLKRYEEAIGQCSL  258 (365)
Q Consensus       179 ~~~a~~~k~~G~~~~~~~~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~kl~~~~~A~~~~~~  258 (365)
                      ...+..++..+..+.+.+++++|+..-.+|.-+.......+...         ....|.|++...+..++...|+..+..
T Consensus       970 ~~~~~~~~~La~l~~~~~d~~~Ai~~~~ka~ii~eR~~g~ds~~---------t~~~y~nlal~~f~~~~~~~al~~~~r 1040 (1236)
T KOG1839|consen  970 PEVASKYRSLAKLSNRLGDNQEAIAQQRKACIISERVLGKDSPN---------TKLAYGNLALYEFAVKNLSGALKSLNR 1040 (1236)
T ss_pred             hhHHHHHHHHHHHHhhhcchHHHHHhcccceeeechhccCCCHH---------HHHHhhHHHHHHHhccCccchhhhHHH
Confidence            34456677788888999999999999888876654422211111         133488999999999998899988888


Q ss_pred             HHhC--------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC
Q 017811          259 VLGE--------DENNVKALFRRGKARAELGQTDAAREDFLKAGKFA  297 (365)
Q Consensus       259 aL~~--------~p~n~ka~~~~g~a~~~l~~~~~A~~~l~~al~l~  297 (365)
                      ++.+        .|.-.-..-+++..+..+++++.|+..++.|+.+.
T Consensus      1041 a~~l~~Ls~ge~hP~~a~~~~nle~l~~~v~e~d~al~~le~A~a~~ 1087 (1236)
T KOG1839|consen 1041 ALKLKLLSSGEDHPPTALSFINLELLLLGVEEADTALRYLESALAKN 1087 (1236)
T ss_pred             HHHhhccccCCCCCchhhhhhHHHHHHhhHHHHHHHHHHHHHHHHHH
Confidence            7754        35555566788888999999999999999999864

>KOG2047 consensus mRNA splicing factor [RNA processing and modification]

Probab=80.48  E-value=75  Score=32.81  Aligned_cols=131  Identities=13%  Similarity=0.055  Sum_probs=96.3

Q ss_pred             hhhhhhhhhhhhhHHHHHHHHHHHHHhhccchhhhhhhhHHHHHHHhhchhhhHHHHHHHHhcCHHHHHHHHHHHHhCCC
Q 017811          185 RKMDGNALFKEEKLEEAMQQYEMAIAYMGDDFMFQLFGKYRDMALAVKNPCHLNMAACLLKLKRYEEAIGQCSLVLGEDE  264 (365)
Q Consensus       185 ~k~~G~~~~~~~~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~kl~~~~~A~~~~~~aL~~~p  264 (365)
                      +..-|..|-..|+.+.|...|++|+...=...             +-...++++-|..-++..+++.|+.....|+..-.
T Consensus       390 w~~faklYe~~~~l~~aRvifeka~~V~y~~v-------------~dLa~vw~~waemElrh~~~~~Al~lm~~A~~vP~  456 (835)
T KOG2047|consen  390 WVEFAKLYENNGDLDDARVIFEKATKVPYKTV-------------EDLAEVWCAWAEMELRHENFEAALKLMRRATHVPT  456 (835)
T ss_pred             HHHHHHHHHhcCcHHHHHHHHHHhhcCCccch-------------HHHHHHHHHHHHHHHhhhhHHHHHHHHHhhhcCCC
Confidence            44566677778888888888888876532211             11245689999999999999999999998875432


Q ss_pred             C------------------CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 017811          265 N------------------NVKALFRRGKARAELGQTDAAREDFLKAGKFAPEDKSIARELRLLAEHEKAVYKKQKEIYK  326 (365)
Q Consensus       265 ~------------------n~ka~~~~g~a~~~l~~~~~A~~~l~~al~l~P~n~~~~~~l~~l~~~~~~~~~~~k~~y~  326 (365)
                      .                  +.+.|-..+.....+|=++.....|.+.+.|.=-.+.+....+.+.+.-+-..+..+. |.
T Consensus       457 ~~~~~~yd~~~pvQ~rlhrSlkiWs~y~DleEs~gtfestk~vYdriidLriaTPqii~NyAmfLEeh~yfeesFk~-YE  535 (835)
T KOG2047|consen  457 NPELEYYDNSEPVQARLHRSLKIWSMYADLEESLGTFESTKAVYDRIIDLRIATPQIIINYAMFLEEHKYFEESFKA-YE  535 (835)
T ss_pred             chhhhhhcCCCcHHHHHHHhHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhHHHHHHHHH-HH
Confidence            2                  2345556677777788888889999999999888888888888887766666666665 66


Q ss_pred             ccc
Q 017811          327 GIF  329 (365)
Q Consensus       327 kmf  329 (365)
                      +=.
T Consensus       536 rgI  538 (835)
T KOG2047|consen  536 RGI  538 (835)
T ss_pred             cCC
Confidence            543

>PRK13184 pknD serine/threonine-protein kinase; Reviewed

Probab=80.44  E-value=16  Score=39.63  Aligned_cols=73  Identities=25%  Similarity=0.191  Sum_probs=55.9

Q ss_pred             hhHHHHHHHHhcCHHHHHHHHHHHHhCCCCCHH-------HHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCcHHHHHHHH
Q 017811          236 HLNMAACLLKLKRYEEAIGQCSLVLGEDENNVK-------ALFRRGKARAELGQTDAAREDFLKAGKFAPEDKSIARELR  308 (365)
Q Consensus       236 ~~nla~~~~kl~~~~~A~~~~~~aL~~~p~n~k-------a~~~~g~a~~~l~~~~~A~~~l~~al~l~P~n~~~~~~l~  308 (365)
                      |+.-|.+|.++++|++-+.++..|++..|.++.       ..||+-.++....  ..|+...--++.+-|.......+-.
T Consensus       555 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~  632 (932)
T PRK13184        555 YLGKALVYQRLGEYNEEIKSLLLALKRYSQHPEISRLRDHLVYRLHESLYKHR--REALVFMLLALWIAPEKISSREEEK  632 (932)
T ss_pred             HHhHHHHHHHhhhHHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHhCcccccchHHHH
Confidence            888999999999999999999999999998875       4556555555433  4577778888999998665554433


Q ss_pred             HH
Q 017811          309 LL  310 (365)
Q Consensus       309 ~l  310 (365)
                      .+
T Consensus       633 ~~  634 (932)
T PRK13184        633 FL  634 (932)
T ss_pred             HH
Confidence            33

>PF10579 Rapsyn_N: Rapsyn N-terminal myristoylation and linker region; InterPro: IPR019568 Neuromuscular junction formation relies upon the clustering of acetylcholine receptors and other proteins in the muscle membrane

Probab=80.39  E-value=11  Score=27.51  Aligned_cols=58  Identities=14%  Similarity=0.019  Sum_probs=43.9

Q ss_pred             hHHHHHHHHhcCHHHHHHHHHHHHhCCCCCHH---HHHHHHHHHHHcCCHHHHHHHHHHHH
Q 017811          237 LNMAACLLKLKRYEEAIGQCSLVLGEDENNVK---ALFRRGKARAELGQTDAAREDFLKAG  294 (365)
Q Consensus       237 ~nla~~~~kl~~~~~A~~~~~~aL~~~p~n~k---a~~~~g~a~~~l~~~~~A~~~l~~al  294 (365)
                      ...|.=++..++..+|+..++++|+..++...   ++=.+.+||...|+|.+++.+--.=+
T Consensus        10 ie~GlkLY~~~~~~~Al~~W~~aL~k~~~~~~rf~~lG~l~qA~~e~Gkyr~~L~fA~~Q~   70 (80)
T PF10579_consen   10 IEKGLKLYHQNETQQALQKWRKALEKITDREDRFRVLGYLIQAHMEWGKYREMLAFALQQL   70 (80)
T ss_pred             HHHHHHHhccchHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            34455566888999999999999998877665   44456788999999999887654433

Rapsyn is a peripheral membrane protein that is selectively concentrated at the neuromuscular junction and is essential for the formation of synaptic acetylcholine receptor aggregates. Acetylcholine receptors fail to aggregate beneath nerve terminals in mice where rapsyn has been knocked out. The N-terminal six amino acids of rapsyn are its myristoylation site, and myristoylation is necessary for the targeting of the protein to the membrane []. ; GO: 0008270 zinc ion binding, 0033130 acetylcholine receptor binding, 0007268 synaptic transmission, 0005856 cytoskeleton, 0030054 cell junction, 0045211 postsynaptic membrane

>PF09670 Cas_Cas02710: CRISPR-associated protein (Cas_Cas02710)

Probab=80.34  E-value=21  Score=34.56  Aligned_cols=101  Identities=17%  Similarity=0.121  Sum_probs=63.9

Q ss_pred             HHHHhhhhhhhhhhhhhHHHHHHHHHHHHHhhccchhhhhhhhHHHHHHHhhchhhhHHHHHHHH--hcCHHHHHHHHHH
Q 017811          181 AADRRKMDGNALFKEEKLEEAMQQYEMAIAYMGDDFMFQLFGKYRDMALAVKNPCHLNMAACLLK--LKRYEEAIGQCSL  258 (365)
Q Consensus       181 ~a~~~k~~G~~~~~~~~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~k--l~~~~~A~~~~~~  258 (365)
                      .+.....++..+|+.++|..|...+...+...|....               ...+.+++.+|..  .-+|.+|...++.
T Consensus       130 ~~~~~~~~a~~l~n~~~y~aA~~~l~~l~~rl~~~~~---------------~~~~~~l~~~y~~WD~fd~~~A~~~l~~  194 (379)
T PF09670_consen  130 FGDREWRRAKELFNRYDYGAAARILEELLRRLPGREE---------------YQRYKDLCEGYDAWDRFDHKEALEYLEK  194 (379)
T ss_pred             HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCchhh---------------HHHHHHHHHHHHHHHccCHHHHHHHHHH
Confidence            4556677888999999999999999999886554321               1235555555544  3356666666654


Q ss_pred             HHhCC------------------------------CC--------CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Q 017811          259 VLGED------------------------------EN--------NVKALFRRGKARAELGQTDAAREDFLKAGKF  296 (365)
Q Consensus       259 aL~~~------------------------------p~--------n~ka~~~~g~a~~~l~~~~~A~~~l~~al~l  296 (365)
                      .+..+                              ..        -..-++.-|.=....|+|+.|..-+-+++++
T Consensus       195 ~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~dLl~NA~RRa~~gryddAvarlYR~lEl  270 (379)
T PF09670_consen  195 LLKRDKALNQEREGLKELVEVLKALESILSALEDKKQRQKKLYYALLADLLANAERRAAQGRYDDAVARLYRALEL  270 (379)
T ss_pred             HHHHhhhhHhHHHHHHHHHHHHHHHHhhccchhhhhccccccHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHH
Confidence            44321                              00        0112333333444578899999999999876

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	365
2if4_A	338	Crystal Structure Of A Multi-Domain Immunophilin Fr		1e-151
2f4e_A	180	N-Terminal Domain Of Fkbp42 From Arabidopsis Thalia		5e-76
1qz2_A	336	Crystal Structure Of Fkbp52 C-Terminal Domain Compl		4e-22
1p5q_A	336	Crystal Structure Of Fkbp52 C-Terminal Domain Lengt		1e-19
1kt0_A	457	Structure Of The Large Fkbp-like Protein, Fkbp51, I		1e-18
1kt1_A	457	Structure Of The Large Fkbp-Like Protein, Fkbp51, I		1e-18
2fbn_A	198	Plasmodium Falciparum Putative Fk506-Binding Protei		2e-16
4apo_A	165	Aip Tpr Domain In Complex With Human Tomm20 Peptide		1e-12
1ihg_A	370	Bovine Cyclophilin 40, Monoclinic Form Length = 370		3e-12
4aif_A	144	Aip Tpr Domain In Complex With Human Hsp90 Peptide		4e-10
3rkv_A	162	C-Terminal Domain Of Protein C56c10.10, A Putative		1e-09
2dg9_A	107	Fk506-Binding Protein Mutant Wl59 Complexed With Ra		1e-06
2dba_A	148	The Solution Structure Of The Tetratrico Peptide Re		1e-06
2ppo_A	107	Crystal Structure Of E60a Mutant Of Fkbp12 Length =		2e-06
2dg4_A	107	Fk506-Binding Protein Mutant Wf59 Complexed With Ra		3e-06
1fkk_A	107	Atomic Structure Of Fkbp12, An Immunophilin Binding		4e-06
3b7x_A	134	Crystal Structure Of Human Fk506-Binding Protein 6		8e-06
1fkb_A	107	Atomic Structure Of The Rapamycin Human Immunophili		9e-06
2ppp_A	107	Crystal Structure Of E60q Mutant Of Fkbp12 Length =		9e-06
2fap_A	107	The Structure Of The Immunophilin-Immunosuppressant		1e-05
1bkf_A	107	Fk506 Binding Protein Fkbp Mutant R42kH87V COMPLEX		1e-05
3h9r_B	109	Crystal Structure Of The Kinase Domain Of Type I Ac		1e-05
3uqa_A	209	Crystal Structure Of A Smt Fusion Peptidyl-Prolyl C		2e-05
1rot_A	149	Structure Of Fkbp59-I, The N-Terminal Domain Of A 5		2e-05
1tco_C	107	Ternary Complex Of A Calcineurin A Fragment, Calcin		2e-05
1q1c_A	280	Crystal Structure Of N(1-260) Of Human Fkbp52 Lengt		3e-05
1eym_A	107	Fk506 Binding Protein Mutant, Homodimeric Complex L		6e-05
3uf8_A	209	Crystal Structure Of A Smt Fusion Peptidyl-Prolyl C		6e-05
1bl4_A	107	Fkbp Mutant F36v Complexed With Remodeled Synthetic		7e-05
4ggq_C	209	Crystal Structure Of A Smt Fusion Peptidyl-Prolyl C		7e-05
3vaw_A	209	Crystal Structure Of A Smt Fusion Peptidyl-Prolyl C		7e-05
2vn1_A	129	Crystal Structure Of The Fk506-Binding Domain Of Pl		8e-05
2ofn_A	135	Solution Structure Of Fk506-Binding Domain (Fkbd)of		8e-05
1n1a_A	140	Crystal Structure Of The N-Terminal Domain Of Human		8e-05
4drj_A	144	O-crystal Structure Of The Ppiase Domain Of Fkbp52,		1e-04
2lgo_A	130	Solution Nmr Structure Of A Fkbp-Type Peptidyl-Prol		1e-04
2ki3_A	126	Structural And Biochemical Characterization Of Fk50		2e-04
3o5d_A	264	Crystal Structure Of A Fragment Of Fkbp51 Comprisin		2e-04
2y78_A	133	Crystal Structure Of Bpss1823, A Mip-Like Chaperone		3e-04
4dz3_A	113	Crystal Structure Of A Peptidyl-Prolyl Cis-Trans Is		3e-04
3o5e_A	144	Fk1 Domain Of Fkbp51, Crystal Form Vi Length = 144		4e-04
4drh_A	144	Co-crystal Structure Of The Ppiase Domain Of Fkbp51		4e-04
2ke0_A	117	Solution Structure Of Peptidyl-Prolyl Cis-Trans Iso		5e-04
3o5g_A	128	Fk1 Domain Of Fkbp51, Crystal Form I Length = 128		5e-04
3uqb_A	209	Crystal Structure Of A Smt Fusion Peptidyl-Prolyl C		5e-04
3o5l_A	128	Fk1 Domain Mutant A19t Of Fkbp51, Crystal Form I Le		5e-04
1r9h_A	135	Structural Genomics Of C.Elegans: Fkbp-Type Peptidy		6e-04

>pdb|2IF4|A Chain A, Crystal Structure Of A Multi-Domain Immunophilin From Arabidopsis Thaliana Length = 338

Iteration: 1
 Score =  531 bits (1369), Expect = e-151,   Method: Compositional matrix adjust.
 Identities = 251/317 (79%), Positives = 288/317 (90%)
Query: 18  ESEIVTEDAAFVRGEPPQDGDGPPKVDSEVEVLHEKVTKQIIKEGHGQKPSKYSTCFLHY 77
           ESEIVTE +A V  EP Q+G+ PPKVDSE EVL EKV+KQIIKEGHG KPSKYSTCFLHY
Sbjct: 15  ESEIVTEGSAVVHSEPSQEGNVPPKVDSEAEVLDEKVSKQIIKEGHGSKPSKYSTCFLHY 74
Query: 78  RAWAESTRHKFDDTWLEQQPLEMVLGKEKKEMTGLAIGVSSMKAGEHALLHVGWELGYGK 137
           RAW ++++HKF+DTW EQQP+E+VLGKEKKE+ GLAIGV+SMK+GE AL+HVGWEL YGK
Sbjct: 75  RAWTKNSQHKFEDTWHEQQPIELVLGKEKKELAGLAIGVASMKSGERALVHVGWELAYGK 134
Query: 138 EGSFSFPNVSPMADLVYEVVLIGFDETKEGKARSDMTVEERIGAADRRKMDGNALFKEEK 197
           EG+FSFPNV PMADL+YEV +IGFDETKEGKARSDMTVEERIGAADRRKMDGN+LFKEEK
Sbjct: 135 EGNFSFPNVPPMADLLYEVEVIGFDETKEGKARSDMTVEERIGAADRRKMDGNSLFKEEK 194
Query: 198 LEEAMQQYEMAIAYMGDDFMFQLFGKYRDMALAVKNPCHLNMAACLLKLKRYEEAIGQCS 257
           LEEAMQQYEMAIAYMGDDFMFQL+GKY+DMALAVKNPCHLN+AACL+KLKRY+EAIG C+
Sbjct: 195 LEEAMQQYEMAIAYMGDDFMFQLYGKYQDMALAVKNPCHLNIAACLIKLKRYDEAIGHCN 254
Query: 258 LVLGEDENNVKALFRRGKARAELGQTDAAREDFLKAGKFAPEDKSIARELRLLAEHEKAV 317
           +VL E+E N KALFRRGKA+AELGQ D+AR+DF KA K+AP+DK+I RELR LAE EKA+
Sbjct: 255 IVLTEEEKNPKALFRRGKAKAELGQMDSARDDFRKAQKYAPDDKAIRRELRALAEQEKAL 314
Query: 318 YKKQKEIYKGIFGPRPE 334
           Y+KQKE+YKGIF  + E
Sbjct: 315 YQKQKEMYKGIFKGKDE 331

>pdb|2F4E|A Chain A, N-Terminal Domain Of Fkbp42 From Arabidopsis Thaliana Length = 180

Iteration: 1
 Score =  281 bits (718), Expect = 5e-76,   Method: Compositional matrix adjust.
 Identities = 132/166 (79%), Positives = 150/166 (90%)
Query: 18  ESEIVTEDAAFVRGEPPQDGDGPPKVDSEVEVLHEKVTKQIIKEGHGQKPSKYSTCFLHY 77
           ESEIVTE +A V  EP Q+G+ PPKVDSE EVL EKV+KQIIKEGHG KPSKYSTCFLHY
Sbjct: 15  ESEIVTEGSAVVHSEPSQEGNVPPKVDSEAEVLDEKVSKQIIKEGHGSKPSKYSTCFLHY 74
Query: 78  RAWAESTRHKFDDTWLEQQPLEMVLGKEKKEMTGLAIGVSSMKAGEHALLHVGWELGYGK 137
           RAW ++++HKF+DTW EQQP+E+VLGKEKKE+ GLAIGV+SMK+GE AL+HVGWEL YGK
Sbjct: 75  RAWTKNSQHKFEDTWHEQQPIELVLGKEKKELAGLAIGVASMKSGERALVHVGWELAYGK 134
Query: 138 EGSFSFPNVSPMADLVYEVVLIGFDETKEGKARSDMTVEERIGAAD 183
           EG+FSFPNV PMADL+YEV +IGFDETKEGKARSDMTVEERIGAAD
Sbjct: 135 EGNFSFPNVPPMADLLYEVEVIGFDETKEGKARSDMTVEERIGAAD 180

>pdb|1QZ2|A Chain A, Crystal Structure Of Fkbp52 C-Terminal Domain Complex With The C-Terminal Peptide Meevd Of Hsp90 Length = 336

Iteration: 1
 Score =  102 bits (254), Expect = 4e-22,   Method: Compositional matrix adjust.
 Identities = 71/244 (29%), Positives = 126/244 (51%), Gaps = 8/244 (3%)
Query: 88  FDDTWLEQQPLEMVLGK-EKKEM-TGLAIGVSSMKAGEHALLHVGWELGYGKEGSFSFPN 145
           + D   +Q+ L   +G+ E  ++  GL   +  M+ GEH+++++     +G  G   F  
Sbjct: 55  YKDKLFDQRELRFEIGEGENLDLPYGLERAIQRMEKGEHSIVYLKPSYAFGSVGKEKF-Q 113
Query: 146 VSPMADLVYEVVLIGFDETKEGKARSDMTVEERIGAADRRKMDGNALFKEEKLEEAMQQY 205
           + P A+L YE+ L  F++ KE     +M  EE++  +   K  G   FKE K ++A+ QY
Sbjct: 114 IPPNAELKYELHLKSFEKAKES---WEMNSEEKLEQSTIVKERGTVYFKEGKYKQALLQY 170
Query: 206 EMAIAYMGDDFMFQLFGKYRDMALAVKNPCHLNMAACLLKLKRYEEAIGQCSLVLGEDEN 265
           +  ++++  +  F    +    A A++   HLN+A C LKL+ +  AI  C+  L  D N
Sbjct: 171 KKIVSWLEYESSFS--NEEAQKAQALRLASHLNLAMCHLKLQAFSAAIESCNKALELDSN 228
Query: 266 NVKALFRRGKARAELGQTDAAREDFLKAGKFAPEDKSIARELRLLAEHEKAVYKKQKEIY 325
           N K LFRRG+A   +   + AR DF K  +  P +K+   +L +  +  +    ++K++Y
Sbjct: 229 NEKGLFRRGEAHLAVNDFELARADFQKVLQLYPNNKAAKTQLAVCQQRIRRQLAREKKLY 288
Query: 326 KGIF 329
             +F
Sbjct: 289 ANMF 292

>pdb|1P5Q|A Chain A, Crystal Structure Of Fkbp52 C-Terminal Domain Length = 336

Iteration: 1
 Score = 94.0 bits (232), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 68/244 (27%), Positives = 123/244 (50%), Gaps = 8/244 (3%)
Query: 88  FDDTWLEQQPLEMVLGK-EKKEMT-GLAIGVSSMKAGEHALLHVGWELGYGKEGSFSFPN 145
           + D   +Q+ L   +G+ E  ++  GL   +   + GEH+++++     +G  G   F  
Sbjct: 55  YKDKLFDQRELRFEIGEGENLDLPYGLERAIQRXEKGEHSIVYLKPSYAFGSVGKEKF-Q 113
Query: 146 VSPMADLVYEVVLIGFDETKEGKARSDMTVEERIGAADRRKMDGNALFKEEKLEEAMQQY 205
           + P A+L YE+ L  F++ KE     +   EE++  +   K  G   FKE K ++A+ QY
Sbjct: 114 IPPNAELKYELHLKSFEKAKES---WEXNSEEKLEQSTIVKERGTVYFKEGKYKQALLQY 170
Query: 206 EMAIAYMGDDFMFQLFGKYRDMALAVKNPCHLNMAACLLKLKRYEEAIGQCSLVLGEDEN 265
           +  ++++  +  F    +    A A++   HLN+A C LKL+ +  AI  C+  L  D N
Sbjct: 171 KKIVSWLEYESSFS--NEEAQKAQALRLASHLNLAMCHLKLQAFSAAIESCNKALELDSN 228
Query: 266 NVKALFRRGKARAELGQTDAAREDFLKAGKFAPEDKSIARELRLLAEHEKAVYKKQKEIY 325
           N K L RRG+A   +   + AR DF K  +  P +K+   +L +  +  +    ++K++Y
Sbjct: 229 NEKGLSRRGEAHLAVNDFELARADFQKVLQLYPNNKAAKTQLAVCQQRIRRQLAREKKLY 288
Query: 326 KGIF 329
             +F
Sbjct: 289 ANMF 292

>pdb|1KT0|A Chain A, Structure Of The Large Fkbp-like Protein, Fkbp51, Involved In Steroid Receptor Complexes Length = 457

Iteration: 1
 Score = 90.9 bits (224), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 62/219 (28%), Positives = 113/219 (51%), Gaps = 6/219 (2%)
Query: 111 GLAIGVSSMKAGEHALLHVGWELGYGKEGSFSFPNVSPMADLVYEVVLIGFDETKEGKAR 170
           G+   +  M+  E  +L++G   G+G+ G   F  + P A+L+YEV L  F++ KE    
Sbjct: 201 GIDKALEKMQREEQCILYLGPRYGFGEAGKPKF-GIEPNAELIYEVTLKSFEKAKES--- 256
Query: 171 SDMTVEERIGAADRRKMDGNALFKEEKLEEAMQQYEMAIAYMGDDFMFQLFGKYRDMALA 230
            +M  +E++  A   K  G   FK  K  +A+ QY   ++++  +  + L  K    + +
Sbjct: 257 WEMDTKEKLEQAAIVKEKGTVYFKGGKYMQAVIQYGKIVSWL--EMEYGLSEKESKASES 314
Query: 231 VKNPCHLNMAACLLKLKRYEEAIGQCSLVLGEDENNVKALFRRGKARAELGQTDAAREDF 290
                 LN+A C LKL+ Y +A+  C   LG D  N K L+RRG+A+  + + ++A+ DF
Sbjct: 315 FLLAAFLNLAMCYLKLREYTKAVECCDKALGLDSANEKGLYRRGEAQLLMNEFESAKGDF 374
Query: 291 LKAGKFAPEDKSIARELRLLAEHEKAVYKKQKEIYKGIF 329
            K  +  P++K+   ++ +  +  K   ++ + IY  +F
Sbjct: 375 EKVLEVNPQNKAARLQISMCQKKAKEHNERDRRIYANMF 413

>pdb|1KT1|A Chain A, Structure Of The Large Fkbp-Like Protein, Fkbp51, Involved In Steroid Receptor Complexes Length = 457

Iteration: 1
 Score = 90.5 bits (223), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 62/219 (28%), Positives = 112/219 (51%), Gaps = 6/219 (2%)
Query: 111 GLAIGVSSMKAGEHALLHVGWELGYGKEGSFSFPNVSPMADLVYEVVLIGFDETKEGKAR 170
           G+   +  M+  E  +LH+G   G+G+ G   F  + P A+L+YEV L  F++ KE    
Sbjct: 201 GIDKALEKMQREEQCILHLGPRYGFGEAGKPKF-GIEPNAELIYEVTLKSFEKAKES--- 256
Query: 171 SDMTVEERIGAADRRKMDGNALFKEEKLEEAMQQYEMAIAYMGDDFMFQLFGKYRDMALA 230
            +M  +E++  A   K  G   FK  K  +A+ QY   ++++  +  + L  K    + +
Sbjct: 257 WEMDTKEKLEQAAIVKEKGTVYFKGGKYVQAVIQYGKIVSWL--EMEYGLSEKESKASES 314
Query: 231 VKNPCHLNMAACLLKLKRYEEAIGQCSLVLGEDENNVKALFRRGKARAELGQTDAAREDF 290
                 LN+A C LKL+ Y +A+  C   LG D  N K L+RRG+A+  + + ++A+ DF
Sbjct: 315 FLLAAFLNLAMCYLKLREYTKAVECCDKALGLDSANEKGLYRRGEAQLLMNEFESAKGDF 374
Query: 291 LKAGKFAPEDKSIARELRLLAEHEKAVYKKQKEIYKGIF 329
            K  +  P++K+   ++ +  +  K   ++ +  Y  +F
Sbjct: 375 EKVLEVNPQNKAARLQIFMCQKKAKEHNERDRRTYANMF 413

>pdb|2FBN|A Chain A, Plasmodium Falciparum Putative Fk506-Binding Protein Pfl2275c, C-Terminal Tpr-Containing Domain Length = 198

Iteration: 1
 Score = 83.2 bits (204), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 59/178 (33%), Positives = 92/178 (51%), Gaps = 11/178 (6%)
Query: 168 KARSDMTVEERIGAADRRKMDGNALFKEEKLEEAMQQYEMAIAYM-----GDDFMFQLFG 222
           K+  D T EE++ +A   K +GN  FK+ ++ EA+ +Y+ A+ +       DD +  L  
Sbjct: 24  KSIYDYTDEEKVQSAFDIKEEGNEFFKKNEINEAIVKYKEALDFFIHTEEWDDQI--LLD 81
Query: 223 KYRDMALAVKNPCHLNMAACLLKLKRYEEAIGQCSLVLGEDENNVKALFRRGKARAELGQ 282
           K +++ ++    C+LN+A C  K K Y +AI   S VL  D+NNVKAL++ G A    G 
Sbjct: 82  KKKNIEIS----CNLNLATCYNKNKDYPKAIDHASKVLKIDKNNVKALYKLGVANMYFGF 137
Query: 283 TDAAREDFLKAGKFAPEDKSIARELRLLAEHEKAVYKKQKEIYKGIFGPRPEPKQKKN 340
            + A+E+  KA    P +  I     L     K   KK K  + G+F   P  ++KKN
Sbjct: 138 LEEAKENLYKAASLNPNNLDIRNSYELCVNKLKEARKKDKLTFGGMFDKGPLYEEKKN 195

>pdb|4APO|A Chain A, Aip Tpr Domain In Complex With Human Tomm20 Peptide Length = 165

Iteration: 1
 Score = 70.9 bits (172), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 51/160 (31%), Positives = 82/160 (51%), Gaps = 2/160 (1%)
Query: 173 MTVEERIGAADRRKMDGNALFKEEKLEEAMQQYEMAIAYMGDDFMFQLFGKYRDMALAVK 232
           MT EE+  A      +GN L++E  ++EA  +Y  AIA + +  M +  G    + L  +
Sbjct: 5   MTAEEKAKAVPLIHQEGNRLYREGHVKEAAAKYYDAIACLKNLQMKEQPGSPEWIQLDQQ 64
Query: 233 -NPCHLNMAACLLKLKRYEEAIGQCSLVLGEDENNVKALFRRGKARAELGQTDAAREDFL 291
             P  LN   C L ++ Y E +  CS +L + ++NVKA F+RGKA A +     A+ DF 
Sbjct: 65  ITPLLLNYCQCKLVVEEYYEVLDHCSSILNKYDDNVKAYFKRGKAHAAVWNAQEAQADFA 124
Query: 292 KAGKFAPE-DKSIARELRLLAEHEKAVYKKQKEIYKGIFG 330
           K  +  P     ++REL+ L    +   ++ K  ++GIF 
Sbjct: 125 KVLELDPALAPVVSRELQALEARIRQKDEEDKARFRGIFS 164

>pdb|1IHG|A Chain A, Bovine Cyclophilin 40, Monoclinic Form Length = 370

Iteration: 1
 Score = 69.3 bits (168), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 49/144 (34%), Positives = 74/144 (51%), Gaps = 7/144 (4%)
Query: 189 GNALFKEEKLEEAMQQYEMAIAYM-GDDFMFQLF--GKYRDMALAVKNPCHLNMAACLLK 245
           GN  FK +  E A+++Y   + Y+ G     +     K + +AL+    C LN+ AC LK
Sbjct: 230 GNTFFKSQNWEMAIKKYTKVLRYVEGSRAAAEDADGAKLQPVALS----CVLNIGACKLK 285
Query: 246 LKRYEEAIGQCSLVLGEDENNVKALFRRGKARAELGQTDAAREDFLKAGKFAPEDKSIAR 305
           +  ++ A+  C   L  D +N KAL+RR +    L + D A  D  KA + APEDK+I  
Sbjct: 286 MSDWQGAVDSCLEALEIDPSNTKALYRRAQGWQGLKEYDQALADLKKAQEIAPEDKAIQA 345
Query: 306 ELRLLAEHEKAVYKKQKEIYKGIF 329
           EL  + +  KA   K+K  Y  +F
Sbjct: 346 ELLKVKQKIKAQKDKEKAAYAKMF 369

>pdb|4AIF|A Chain A, Aip Tpr Domain In Complex With Human Hsp90 Peptide Length = 144

Iteration: 1
 Score = 62.4 bits (150), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 45/137 (32%), Positives = 71/137 (51%), Gaps = 2/137 (1%)
Query: 176 EERIGAADRRKMDGNALFKEEKLEEAMQQYEMAIAYMGDDFMFQLFGKYRDMALAVK-NP 234
           EE+  A      +GN L++E  ++EA  +Y  AIA + +  M +  G    + L  +  P
Sbjct: 2   EEKAKAVPLIHQEGNRLYREGHVKEAAAKYYDAIACLKNLQMKEQPGSPEWIQLDQQITP 61
Query: 235 CHLNMAACLLKLKRYEEAIGQCSLVLGEDENNVKALFRRGKARAELGQTDAAREDFLKAG 294
             LN   C L ++ Y E +  CS +L + ++NVKA F+RGKA A +     A+ DF K  
Sbjct: 62  LLLNYCQCKLVVEEYYEVLDHCSSILNKYDDNVKAYFKRGKAHAAVWNAQEAQADFAKVL 121
Query: 295 KFAPE-DKSIARELRLL 310
           +  P     ++REL+ L
Sbjct: 122 ELDPALAPVVSRELQAL 138

>pdb|3RKV|A Chain A, C-Terminal Domain Of Protein C56c10.10, A Putative Peptidylprolyl Isomerase, From Caenorhabditis Elegans Length = 162

Iteration: 1
 Score = 60.8 bits (146), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 46/158 (29%), Positives = 76/158 (48%), Gaps = 2/158 (1%)
Query: 176 EERIGAADRRKMDGNALFKEEKLEEAMQQYEMAIAYMGDDFMFQLFGKYRDMALAVKN-P 234
           ++++ + +  +  GN LF ++  +EA+  Y  A+  +    + +  G+   + L  KN P
Sbjct: 5   DDKLKSVEALRQKGNELFVQKDYKEAIDAYRDALTRLDTLILREKPGEPEWVELDRKNIP 64
Query: 235 CHLNMAACLLKLKRYEEAIGQCSLVLGEDENNVKALFRRGKARAELGQTDAAREDFLKAG 294
            + NM+ C L +    EA    S VL  +E N KALFRR KAR    + D A ED     
Sbjct: 65  LYANMSQCYLNIGDLHEAEETSSEVLKREETNEKALFRRAKARIAAWKLDEAEEDLKLLL 124
Query: 295 KFAPEDKS-IARELRLLAEHEKAVYKKQKEIYKGIFGP 331
           +  P   S +ARE++++ E         +  Y  +F P
Sbjct: 125 RNHPAAASVVAREMKIVTERRAEKKADSRVTYSKMFQP 162

>pdb|2DG9|A Chain A, Fk506-Binding Protein Mutant Wl59 Complexed With Rapamycin Length = 107

Iteration: 1
 Score = 51.2 bits (121), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 34/107 (31%), Positives = 54/107 (50%), Gaps = 5/107 (4%)
Query: 54  VTKQIIKEGHGQK-PSKYSTCFLHYRAWAESTRHKFDDTWLEQQPLEMVLGKEKKEMTGL 112
           V  + I  G G+  P +  TC +HY    E  + KFD +    +P + +LGK++  + GL
Sbjct: 2   VQVETISPGDGRTFPKRGQTCVVHYTGMLEDGK-KFDSSRDRNKPFKFMLGKQEV-IRGL 59
Query: 113 AIGVSSMKAGEHALLHVGWELGYGKEGSFSFPNVSPMADLVYEVVLI 159
             GV+ M  G+ A L +  +  YG  G      + P A LV++V L+
Sbjct: 60  EEGVAQMSVGQRAKLTISPDYAYGATGHPGI--IPPHATLVFDVELL 104

>pdb|2DBA|A Chain A, The Solution Structure Of The Tetratrico Peptide Repeat Of Human Smooth Muscle Cell Associated Protein-1, Isoform 2 Length = 148

Iteration: 1
 Score = 50.8 bits (120), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 39/126 (30%), Positives = 61/126 (48%), Gaps = 14/126 (11%)
Query: 186 KMDGNALFKEEKLEEAMQQYEMAIAYMGDDFMFQLFGKYRDMALAVKNPCHLNMAACLLK 245
           + +GN LFK      A+  Y  A+          L    +D A+      H N AAC LK
Sbjct: 32  RKEGNELFKCGDYGGALAAYTQALG---------LDATPQDQAV-----LHRNRAACHLK 77
Query: 246 LKRYEEAIGQCSLVLGEDENNVKALFRRGKARAELGQTDAAREDFLKAGKFAPEDKSIAR 305
           L+ Y++A  + S  + +D  +VKAL+RR +A  +LG+ D A  D  +     P++K    
Sbjct: 78  LEDYDKAETEASKAIEKDGGDVKALYRRSQALEKLGRLDQAVLDLQRCVSLEPKNKVFQE 137
Query: 306 ELRLLA 311
            LR ++
Sbjct: 138 ALRNIS 143

>pdb|2PPO|A Chain A, Crystal Structure Of E60a Mutant Of Fkbp12 Length = 107

Iteration: 1
 Score = 50.1 bits (118), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 34/107 (31%), Positives = 54/107 (50%), Gaps = 5/107 (4%)
Query: 54  VTKQIIKEGHGQK-PSKYSTCFLHYRAWAESTRHKFDDTWLEQQPLEMVLGKEKKEMTGL 112
           V  + I  G G+  P +  TC +HY    E  + KFD +    +P + +LGK++  + G 
Sbjct: 2   VQVETISPGDGRTFPKRGQTCVVHYTGMLEDGK-KFDSSRDRNKPFKFMLGKQEV-IRGW 59
Query: 113 AIGVSSMKAGEHALLHVGWELGYGKEGSFSFPNVSPMADLVYEVVLI 159
           A GV+ M  G+ A L +  +  YG  G      + P A LV++V L+
Sbjct: 60  AEGVAQMSVGQRAKLTISPDYAYGATGHPGI--IPPHATLVFDVELL 104

>pdb|2DG4|A Chain A, Fk506-Binding Protein Mutant Wf59 Complexed With Rapamycin Length = 107

Iteration: 1
 Score = 49.7 bits (117), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 33/107 (30%), Positives = 53/107 (49%), Gaps = 5/107 (4%)
Query: 54  VTKQIIKEGHGQK-PSKYSTCFLHYRAWAESTRHKFDDTWLEQQPLEMVLGKEKKEMTGL 112
           V  + I  G G+  P +  TC +HY    E  + KFD +    +P + +LGK++  + G 
Sbjct: 2   VQVETISPGDGRTFPKRGQTCVVHYTGMLEDGK-KFDSSRDRNKPFKFMLGKQEV-IRGF 59
Query: 113 AIGVSSMKAGEHALLHVGWELGYGKEGSFSFPNVSPMADLVYEVVLI 159
             GV+ M  G+ A L +  +  YG  G      + P A LV++V L+
Sbjct: 60  EEGVAQMSVGQRAKLTISPDYAYGATGHPGI--IPPHATLVFDVELL 104

>pdb|1FKK|A Chain A, Atomic Structure Of Fkbp12, An Immunophilin Binding Protein Length = 107

Iteration: 1
 Score = 48.9 bits (115), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 33/107 (30%), Positives = 53/107 (49%), Gaps = 5/107 (4%)
Query: 54  VTKQIIKEGHGQK-PSKYSTCFLHYRAWAESTRHKFDDTWLEQQPLEMVLGKEKKEMTGL 112
           V  + I  G G+  P +  TC +HY    E  + KFD +    +P + VLGK++  + G 
Sbjct: 2   VQVETISPGDGRTFPKRGQTCVVHYTGMLEDGK-KFDSSRDRNKPFKFVLGKQEV-IRGW 59
Query: 113 AIGVSSMKAGEHALLHVGWELGYGKEGSFSFPNVSPMADLVYEVVLI 159
             GV+ M  G+ A L +  +  YG  G      + P A L+++V L+
Sbjct: 60  EEGVAQMSVGQRAKLTISPDYAYGATGHPGI--IPPNATLIFDVELL 104

>pdb|3B7X|A Chain A, Crystal Structure Of Human Fk506-Binding Protein 6 Length = 134

Iteration: 1
 Score = 48.1 bits (113), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 30/108 (27%), Positives = 50/108 (46%), Gaps = 3/108 (2%)
Query: 54  VTKQIIKEGHGQKPSKYSTCFLHYRAWAESTRHKFDDTWLEQQPLEMVLGKEKKEMTGLA 113
           V K +I+EG G   +  ++  + Y  + E     FD  +  + P  M LG E   + G+ 
Sbjct: 28  VLKDVIREGAGDLVAPDASVLVKYSGYLEHMDRPFDSNYFRKTPRLMKLG-EDITLWGME 86
Query: 114 IGVSSMKAGEHALLHVGWELGYGKEGSFSFPNVSPMADLVYEVVLIGF 161
           +G+ SM+ GE A         YG  G    P + P   +++E+ L+ F
Sbjct: 87  LGLLSMRRGELARFLFKPNYAYGTLG--CPPLIPPNTTVLFEIELLDF 132

>pdb|1FKB|A Chain A, Atomic Structure Of The Rapamycin Human Immunophilin Fkbp- 12 Complex Length = 107

Iteration: 1
 Score = 47.8 bits (112), Expect = 9e-06,   Method: Compositional matrix adjust.
 Identities = 33/107 (30%), Positives = 53/107 (49%), Gaps = 5/107 (4%)
Query: 54  VTKQIIKEGHGQK-PSKYSTCFLHYRAWAESTRHKFDDTWLEQQPLEMVLGKEKKEMTGL 112
           V  + I  G G+  P +  TC +HY    E  + KFD +    +P + +LGK++  + G 
Sbjct: 2   VQVETISPGDGRTFPKRGQTCVVHYTGMLEDGK-KFDSSRDRNKPFKFMLGKQEV-IRGW 59
Query: 113 AIGVSSMKAGEHALLHVGWELGYGKEGSFSFPNVSPMADLVYEVVLI 159
             GV+ M  G+ A L +  +  YG  G      + P A LV++V L+
Sbjct: 60  EEGVAQMSVGQRAKLTISPDYAYGATGHPGI--IPPHATLVFDVELL 104

>pdb|2PPP|A Chain A, Crystal Structure Of E60q Mutant Of Fkbp12 Length = 107

Iteration: 1
 Score = 47.8 bits (112), Expect = 9e-06,   Method: Compositional matrix adjust.
 Identities = 33/107 (30%), Positives = 53/107 (49%), Gaps = 5/107 (4%)
Query: 54  VTKQIIKEGHGQK-PSKYSTCFLHYRAWAESTRHKFDDTWLEQQPLEMVLGKEKKEMTGL 112
           V  + I  G G+  P +  TC +HY    E  + KFD +    +P + +LGK++  + G 
Sbjct: 2   VQVETISPGDGRTFPKRGQTCVVHYTGMLEDGK-KFDSSRDRNKPFKFMLGKQEV-IRGW 59
Query: 113 AIGVSSMKAGEHALLHVGWELGYGKEGSFSFPNVSPMADLVYEVVLI 159
             GV+ M  G+ A L +  +  YG  G      + P A LV++V L+
Sbjct: 60  QEGVAQMSVGQRAKLTISPDYAYGATGHPGI--IPPHATLVFDVELL 104

>pdb|2FAP|A Chain A, The Structure Of The Immunophilin-Immunosuppressant Fkbp12- (C16)-Ethoxy Rapamycin Complex Interacting With Huma Length = 107

Iteration: 1
 Score = 47.8 bits (112), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 33/107 (30%), Positives = 53/107 (49%), Gaps = 5/107 (4%)
Query: 54  VTKQIIKEGHGQK-PSKYSTCFLHYRAWAESTRHKFDDTWLEQQPLEMVLGKEKKEMTGL 112
           V  + I  G G+  P +  TC +HY    E  + KFD +    +P + +LGK++  + G 
Sbjct: 2   VQVETISPGDGRTFPKRGQTCVVHYTGMLEDGK-KFDSSRDRNKPFKFMLGKQEV-IRGW 59
Query: 113 AIGVSSMKAGEHALLHVGWELGYGKEGSFSFPNVSPMADLVYEVVLI 159
             GV+ M  G+ A L +  +  YG  G      + P A LV++V L+
Sbjct: 60  EEGVAQMSVGQRAKLTISPDYAYGATGHPGI--IPPHATLVFDVELL 104

>pdb|1BKF|A Chain A, Fk506 Binding Protein Fkbp Mutant R42kH87V COMPLEX WITH Immunosuppressant Fk506 Length = 107

Iteration: 1
 Score = 47.8 bits (112), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 33/107 (30%), Positives = 54/107 (50%), Gaps = 5/107 (4%)
Query: 54  VTKQIIKEGHGQK-PSKYSTCFLHYRAWAESTRHKFDDTWLEQQPLEMVLGKEKKEMTGL 112
           V  + I  G G+  P +  TC +HY    E  + KFD +  + +P + +LGK++  + G 
Sbjct: 2   VQVETISPGDGRTFPKRGQTCVVHYTGMLEDGK-KFDSSRDKNKPFKFMLGKQEV-IRGW 59
Query: 113 AIGVSSMKAGEHALLHVGWELGYGKEGSFSFPNVSPMADLVYEVVLI 159
             GV+ M  G+ A L +  +  YG  G      + P A LV++V L+
Sbjct: 60  EEGVAQMSVGQRAKLTISPDYAYGATGVPGI--IPPHATLVFDVELL 104

>pdb|3H9R|B Chain B, Crystal Structure Of The Kinase Domain Of Type I Activin Receptor (Acvr1) In Complex With Fkbp12 And Dorsomorphin Length = 109

Iteration: 1
 Score = 47.4 bits (111), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 33/107 (30%), Positives = 53/107 (49%), Gaps = 5/107 (4%)
Query: 54  VTKQIIKEGHGQK-PSKYSTCFLHYRAWAESTRHKFDDTWLEQQPLEMVLGKEKKEMTGL 112
           V  + I  G G+  P +  TC +HY    E  + KFD +    +P + +LGK++  + G 
Sbjct: 4   VQVETISPGDGRTFPKRGQTCVVHYTGMLEDGK-KFDSSRDRNKPFKFMLGKQEV-IRGW 61
Query: 113 AIGVSSMKAGEHALLHVGWELGYGKEGSFSFPNVSPMADLVYEVVLI 159
             GV+ M  G+ A L +  +  YG  G      + P A LV++V L+
Sbjct: 62  EEGVAQMSVGQRAKLTISPDYAYGATGHPGI--IPPHATLVFDVELL 106

>pdb|3UQA|A Chain A, Crystal Structure Of A Smt Fusion Peptidyl-Prolyl Cis-Trans Isomerase With Surface Mutation A54e From Burkholderia Pseudomallei Complexed With Fk506 Length = 209

Iteration: 1
 Score = 47.0 bits (110), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 34/101 (33%), Positives = 46/101 (45%), Gaps = 4/101 (3%)
Query: 59  IKEGHGQKPSKYSTCFLHYRAWAESTRHKFDDTWLEQQPLEMVLGKEKKEMTGLAIGVSS 118
           + EG G +     T  +HY  W  +   KFD +     P E VLG     + G   GV  
Sbjct: 111 LTEGSGAEARAGQTVSVHYTGWL-TDGQKFDSSKDRNDPFEFVLGG-GMVIKGWDEGVQG 168
Query: 119 MKAGEHALLHVGWELGYGKEGSFSFPNVSPMADLVYEVVLI 159
           MK G    L +  +LGYG  G+     + P A LV+EV L+
Sbjct: 169 MKVGGVRRLTIPPQLGYGARGAGGV--IPPNATLVFEVELL 207

>pdb|1ROT|A Chain A, Structure Of Fkbp59-I, The N-Terminal Domain Of A 59 Kda Fk506-Binding Protein, Nmr, Minimized Average Structure Length = 149

Iteration: 1
 Score = 46.6 bits (109), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 38/111 (34%), Positives = 50/111 (45%), Gaps = 5/111 (4%)
Query: 52  EKVTKQIIKEGHG-QKPSKYSTCFLHYRAWAESTRHKFDDTWLEQQPLEMVLGKEKKEMT 110
           E V K I +EG G + P      F+HY  W      KFD +   +      LGK  + + 
Sbjct: 30  EGVLKVIKREGTGTETPMIGDRVFVHYTGWLLDGT-KFDSSLDRKDKFSFDLGK-GEVIK 87
Query: 111 GLAIGVSSMKAGEHALLHVGWELGYGKEGSFSFPNVSPMADLVYEVVLIGF 161
              I V++MK GE   +    E  YG  G  S P + P A LV+EV L  F
Sbjct: 88  AWDIAVATMKVGELCRITCKPEYAYGSAG--SPPKIPPNATLVFEVELFEF 136

>pdb|1TCO|C Chain C, Ternary Complex Of A Calcineurin A Fragment, Calcineurin B, Fkbp12 And The Immunosuppressant Drug Fk506 (tacrolimus) Length = 107

Iteration: 1
 Score = 46.6 bits (109), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 33/107 (30%), Positives = 52/107 (48%), Gaps = 5/107 (4%)
Query: 54  VTKQIIKEGHGQK-PSKYSTCFLHYRAWAESTRHKFDDTWLEQQPLEMVLGKEKKEMTGL 112
           V  + I  G G+  P    TC +HY    E  + KFD +    +P + +LGK++  + G 
Sbjct: 2   VQVETISPGDGRTFPKAGQTCVVHYTGMLEDGK-KFDSSRDRNKPFKFMLGKQEV-IRGW 59
Query: 113 AIGVSSMKAGEHALLHVGWELGYGKEGSFSFPNVSPMADLVYEVVLI 159
             GV+ M  G+ A L +  +  YG  G      + P A LV++V L+
Sbjct: 60  EEGVAQMSVGQRAKLTISPDYAYGATGHPGI--IPPHATLVFDVELL 104

>pdb|1Q1C|A Chain A, Crystal Structure Of N(1-260) Of Human Fkbp52 Length = 280

Iteration: 1
 Score = 46.2 bits (108), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 56/187 (29%), Positives = 76/187 (40%), Gaps = 22/187 (11%)
Query: 23  TEDAAFVRGEPPQDGDGPPKVDSEVEVLHEKVTKQIIKEGHGQK-PSKYSTCFLHYRAWA 81
           TE  A     P +  D  PK D       E V K I +EG G + P      F+HY  W 
Sbjct: 29  TESGAQSAPLPMEGVDISPKQD-------EGVLKVIKREGTGTEMPMIGDRVFVHYTGWL 81
Query: 82  ESTRHKFDDTWLEQQPLEMVLGKEKKEMTGLAIGVSSMKAGEHALLHVGWELGYGKEGSF 141
                KFD +   +      LGK  + +    I +++MK GE   +    E  YG  G  
Sbjct: 82  LDGT-KFDSSLDRKDKFSFDLGK-GEVIKAWDIAIATMKVGEVCHITCKPEYAYGSAG-- 137
Query: 142 SFPNVSPMADLVYEVVLIGFDETKEGKARSDMTVEERIGAADRRKMDGNALFKEEK---L 198
           S P + P A LV+EV L  F          D+T EE  G   R +  G    K  +   +
Sbjct: 138 SPPKIPPNATLVFEVELFEF-------KGEDLTEEEDGGIIRRIQTRGEGYAKPNEGAIV 190
Query: 199 EEAMQQY 205
           E A++ Y
Sbjct: 191 EVALEGY 197

>pdb|1EYM|A Chain A, Fk506 Binding Protein Mutant, Homodimeric Complex Length = 107

Iteration: 1
 Score = 45.1 bits (105), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 32/107 (29%), Positives = 52/107 (48%), Gaps = 5/107 (4%)
Query: 54  VTKQIIKEGHGQK-PSKYSTCFLHYRAWAESTRHKFDDTWLEQQPLEMVLGKEKKEMTGL 112
           V  + I  G G+  P +  TC +HY    E  + K D +    +P + +LGK++  + G 
Sbjct: 2   VQVETISPGDGRTFPKRGQTCVVHYTGMLEDGK-KMDSSRDRNKPFKFMLGKQEV-IRGW 59
Query: 113 AIGVSSMKAGEHALLHVGWELGYGKEGSFSFPNVSPMADLVYEVVLI 159
             GV+ M  G+ A L +  +  YG  G      + P A LV++V L+
Sbjct: 60  EEGVAQMSVGQRAKLTISPDYAYGATGHPGI--IPPHATLVFDVELL 104

>pdb|3UF8|A Chain A, Crystal Structure Of A Smt Fusion Peptidyl-Prolyl Cis-Trans Isomerase With A G95a Surface Mutation From Burkholderia Pseudomallei Complexed With Fk506 Length = 209

Iteration: 1
 Score = 45.1 bits (105), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 33/101 (32%), Positives = 45/101 (44%), Gaps = 4/101 (3%)
Query: 59  IKEGHGQKPSKYSTCFLHYRAWAESTRHKFDDTWLEQQPLEMVLGKEKKEMTGLAIGVSS 118
           + EG G +     T  +HY  W  +   KFD +     P   VLG     + G   GV  
Sbjct: 111 LTEGSGAEARAGQTVSVHYTGWL-TDGQKFDSSKDRNDPFAFVLGG-GMVIKGWDEGVQG 168
Query: 119 MKAGEHALLHVGWELGYGKEGSFSFPNVSPMADLVYEVVLI 159
           MK G    L +  +LGYG  G+     + P A LV+EV L+
Sbjct: 169 MKVGGVRRLTIPPQLGYGARGAAGV--IPPNATLVFEVELL 207

>pdb|1BL4|A Chain A, Fkbp Mutant F36v Complexed With Remodeled Synthetic Ligand Length = 107

Iteration: 1
 Score = 45.1 bits (105), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 32/107 (29%), Positives = 52/107 (48%), Gaps = 5/107 (4%)
Query: 54  VTKQIIKEGHGQK-PSKYSTCFLHYRAWAESTRHKFDDTWLEQQPLEMVLGKEKKEMTGL 112
           V  + I  G G+  P +  TC +HY    E  + K D +    +P + +LGK++  + G 
Sbjct: 2   VQVETISPGDGRTFPKRGQTCVVHYTGMLEDGK-KVDSSRDRNKPFKFMLGKQEV-IRGW 59
Query: 113 AIGVSSMKAGEHALLHVGWELGYGKEGSFSFPNVSPMADLVYEVVLI 159
             GV+ M  G+ A L +  +  YG  G      + P A LV++V L+
Sbjct: 60  EEGVAQMSVGQRAKLTISPDYAYGATGHPGI--IPPHATLVFDVELL 104

>pdb|4GGQ|C Chain C, Crystal Structure Of A Smt Fusion Peptidyl-Prolyl Cis-Trans Isomerase From Burkholderia Pseudomallei Complexed With Cj40 Length = 209

Iteration: 1
 Score = 45.1 bits (105), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 33/101 (32%), Positives = 45/101 (44%), Gaps = 4/101 (3%)
Query: 59  IKEGHGQKPSKYSTCFLHYRAWAESTRHKFDDTWLEQQPLEMVLGKEKKEMTGLAIGVSS 118
           + EG G +     T  +HY  W  +   KFD +     P   VLG     + G   GV  
Sbjct: 111 LTEGSGAEARAGQTVSVHYTGWL-TDGQKFDSSKDRNDPFAFVLGG-GMVIKGWDEGVQG 168
Query: 119 MKAGEHALLHVGWELGYGKEGSFSFPNVSPMADLVYEVVLI 159
           MK G    L +  +LGYG  G+     + P A LV+EV L+
Sbjct: 169 MKVGGVRRLTIPPQLGYGARGAGGV--IPPNATLVFEVELL 207

>pdb|3VAW|A Chain A, Crystal Structure Of A Smt Fusion Peptidyl-Prolyl Cis-Trans Isomerase With Surface Mutation V3i From Burkholderia Pseudomallei Complexed With Fk506 Length = 209

Iteration: 1
 Score = 45.1 bits (105), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 33/101 (32%), Positives = 45/101 (44%), Gaps = 4/101 (3%)
Query: 59  IKEGHGQKPSKYSTCFLHYRAWAESTRHKFDDTWLEQQPLEMVLGKEKKEMTGLAIGVSS 118
           + EG G +     T  +HY  W  +   KFD +     P   VLG     + G   GV  
Sbjct: 111 LTEGSGAEARAGQTVSVHYTGWL-TDGQKFDSSKDRNDPFAFVLGG-GMVIKGWDEGVQG 168
Query: 119 MKAGEHALLHVGWELGYGKEGSFSFPNVSPMADLVYEVVLI 159
           MK G    L +  +LGYG  G+     + P A LV+EV L+
Sbjct: 169 MKVGGVRRLTIPPQLGYGARGAGGV--IPPNATLVFEVELL 207

>pdb|2VN1|A Chain A, Crystal Structure Of The Fk506-Binding Domain Of Plasmodium Falciparum Fkbp35 In Complex With Fk506 Length = 129

Iteration: 1
 Score = 44.7 bits (104), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 38/114 (33%), Positives = 55/114 (48%), Gaps = 8/114 (7%)
Query: 54  VTKQIIK---EGHGQKPSKYSTCFLHYRAWAESTRHKFDDTWLEQQPLEMVLGKEKKEMT 110
           V K I+K   EG    P K +   +HY    EST   FD ++    P +  L ++ + + 
Sbjct: 18  VIKTILKKGDEGEENIPKKGNEVTVHYVGKLESTGKVFDSSFDRNVPFKFHL-EQGEVIK 76
Query: 111 GLAIGVSSMKAGEHALLHVGWELGYGKEGSF-SFPNVSPMADLVYEVVLIGFDE 163
           G  I VSSM+  E  L+ +    GYG EG   S P  S    L++E+ L+ F E
Sbjct: 77  GWDICVSSMRKNEKCLVRIESMYGYGDEGCGESIPGNSV---LLFEIELLSFRE 127

>pdb|2OFN|A Chain A, Solution Structure Of Fk506-Binding Domain (Fkbd)of Fkbp35 From Plasmodium Falciparum Length = 135

Iteration: 1
 Score = 44.7 bits (104), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 38/114 (33%), Positives = 55/114 (48%), Gaps = 8/114 (7%)
Query: 54  VTKQIIK---EGHGQKPSKYSTCFLHYRAWAESTRHKFDDTWLEQQPLEMVLGKEKKEMT 110
           V K I+K   EG    P K +   +HY    EST   FD ++    P +  L ++ + + 
Sbjct: 18  VIKTILKKGDEGEENIPKKGNEVTVHYVGKLESTGKVFDSSFDRNVPFKFHL-EQGEVIK 76
Query: 111 GLAIGVSSMKAGEHALLHVGWELGYGKEGSF-SFPNVSPMADLVYEVVLIGFDE 163
           G  I VSSM+  E  L+ +    GYG EG   S P  S    L++E+ L+ F E
Sbjct: 77  GWDICVSSMRKNEKCLVRIESMYGYGDEGCGESIPGNSV---LLFEIELLSFRE 127

>pdb|1N1A|A Chain A, Crystal Structure Of The N-Terminal Domain Of Human Fkbp52 Length = 140

Iteration: 1
 Score = 44.7 bits (104), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 37/111 (33%), Positives = 50/111 (45%), Gaps = 5/111 (4%)
Query: 52  EKVTKQIIKEGHGQK-PSKYSTCFLHYRAWAESTRHKFDDTWLEQQPLEMVLGKEKKEMT 110
           E V K I +EG G + P      F+HY  W      KFD +   +      LGK  + + 
Sbjct: 31  EGVLKVIKREGTGTEMPMIGDRVFVHYTGWLLDGT-KFDSSLDRKDKFSFDLGK-GEVIK 88
Query: 111 GLAIGVSSMKAGEHALLHVGWELGYGKEGSFSFPNVSPMADLVYEVVLIGF 161
              I +++MK GE   +    E  YG  G  S P + P A LV+EV L  F
Sbjct: 89  AWDIAIATMKVGEVCHITCKPEYAYGSAG--SPPKIPPNATLVFEVELFEF 137

>pdb|4DRJ|A Chain A, O-crystal Structure Of The Ppiase Domain Of Fkbp52, Rapamycin And The Frb Fragment Of Mtor Length = 144

Iteration: 1
 Score = 44.3 bits (103), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 37/111 (33%), Positives = 50/111 (45%), Gaps = 5/111 (4%)
Query: 52  EKVTKQIIKEGHGQK-PSKYSTCFLHYRAWAESTRHKFDDTWLEQQPLEMVLGKEKKEMT 110
           E V K I +EG G + P      F+HY  W      KFD +   +      LGK  + + 
Sbjct: 35  EGVLKVIKREGTGTEMPMIGDRVFVHYTGWLLDGT-KFDSSLDRKDKFSFDLGK-GEVIK 92
Query: 111 GLAIGVSSMKAGEHALLHVGWELGYGKEGSFSFPNVSPMADLVYEVVLIGF 161
              I +++MK GE   +    E  YG  G  S P + P A LV+EV L  F
Sbjct: 93  AWDIAIATMKVGEVCHITCKPEYAYGSAG--SPPKIPPNATLVFEVELFEF 141

>pdb|2LGO|A Chain A, Solution Nmr Structure Of A Fkbp-Type Peptidyl-Prolyl Cis-Trans Isomerase From Giardia Lamblia, Seattle Structural Genomics Center For Infectious Disease Target Gilaa.00840.A Length = 130

Iteration: 1
 Score = 44.3 bits (103), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 32/111 (28%), Positives = 55/111 (49%), Gaps = 5/111 (4%)
Query: 50  LHEKVTKQIIKEGHG-QKPSKYSTCFLHYRAWAESTRHKFDDTWLEQQPLEMVLGKEKKE 108
           +  ++ K+++  G G  KP       +HY       + +FD +    +P +  LG   + 
Sbjct: 22  MSAQLEKKVLTPGDGVTKPQAGKKVTVHYDGRFPDGK-QFDSSRSRGKPFQFTLG-AGEV 79
Query: 109 MTGLAIGVSSMKAGEHALLHVGWELGYGKEGSFSFPNVSPMADLVYEVVLI 159
           + G   GV++M  GE AL  + ++L YG+ G    P + P A LV+EV L+
Sbjct: 80  IKGWDQGVATMTLGEKALFTIPYQLAYGERG--YPPVIPPKATLVFEVELL 128

>pdb|2KI3|A Chain A, Structural And Biochemical Characterization Of Fk506 Binding Domain From Plasmodium Vivax Length = 126

Iteration: 1
 Score = 43.5 bits (101), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 36/114 (31%), Positives = 55/114 (48%), Gaps = 8/114 (7%)
Query: 54  VTKQIIKEGHG---QKPSKYSTCFLHYRAWAESTRHKFDDTWLEQQPLEMVLGKEKKEMT 110
           V K I+++G G     P K +   +HY    ES+   FD +     P +  LG + + + 
Sbjct: 17  VVKTILRKGEGGEENAPKKGNEVTVHYVGKLESSGKVFDSSRERNVPFKFHLG-QGEVIK 75
Query: 111 GLAIGVSSMKAGEHALLHVGWELGYGKEGSF-SFPNVSPMADLVYEVVLIGFDE 163
           G  I V+SM   E   + +  + GYG+EG   S P  S    L++E+ LI F E
Sbjct: 76  GWDICVASMTKNEKCSVRLDSKYGYGEEGCGESIPGNSV---LIFEIELISFRE 126

>pdb|3O5D|A Chain A, Crystal Structure Of A Fragment Of Fkbp51 Comprising The Fk1 And Fk2 Domains Length = 264

Iteration: 1
 Score = 43.1 bits (100), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 34/109 (31%), Positives = 52/109 (47%), Gaps = 5/109 (4%)
Query: 54  VTKQIIKEGHGQK-PSKYSTCFLHYRAWAESTRHKFDDTWLEQQPLEMVLGKEKKEMTGL 112
           V K + + G+G++ P      ++HY+    S   KFD +    +P    LGK  + +   
Sbjct: 37  VLKIVKRVGNGEETPMIGDKVYVHYKGKL-SNGKKFDSSHDRNEPFVFSLGK-GQVIKAW 94
Query: 113 AIGVSSMKAGEHALLHVGWELGYGKEGSFSFPNVSPMADLVYEVVLIGF 161
            IGV++MK GE   L    E  YG  G  S P +   A L +E+ L+ F
Sbjct: 95  DIGVATMKKGEICHLLCKPEYAYGSAG--SLPKIPSNATLFFEIELLDF 141

>pdb|2Y78|A Chain A, Crystal Structure Of Bpss1823, A Mip-Like Chaperone From Burkholderia Pseudomallei Length = 133

Iteration: 1
 Score = 43.1 bits (100), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 33/101 (32%), Positives = 45/101 (44%), Gaps = 4/101 (3%)
Query: 59  IKEGHGQKPSKYSTCFLHYRAWAESTRHKFDDTWLEQQPLEMVLGKEKKEMTGLAIGVSS 118
           + EG G +     T  +HY  W  +   KFD +     P   VLG     + G   GV  
Sbjct: 35  LTEGSGAEARAGQTVSVHYTGWL-TDGQKFDSSKDRNDPFAFVLGG-GMVIKGWDEGVQG 92
Query: 119 MKAGEHALLHVGWELGYGKEGSFSFPNVSPMADLVYEVVLI 159
           MK G    L +  +LGYG  G+     + P A LV+EV L+
Sbjct: 93  MKVGGVRRLTIPPQLGYGARGAGGV--IPPNATLVFEVELL 131

>pdb|4DZ3|A Chain A, Crystal Structure Of A Peptidyl-Prolyl Cis-Trans Isomerase With Surface Mutation M61h From Burkholderia Pseudomallei Complexed With Fk506 Length = 113

Iteration: 1
 Score = 42.7 bits (99), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 33/101 (32%), Positives = 45/101 (44%), Gaps = 4/101 (3%)
Query: 59  IKEGHGQKPSKYSTCFLHYRAWAESTRHKFDDTWLEQQPLEMVLGKEKKEMTGLAIGVSS 118
           + EG G +     T  +HY  W  +   KFD +     P   VLG     + G   GV  
Sbjct: 15  LTEGSGAEARAGQTVSVHYTGWL-TDGQKFDSSKDRNDPFAFVLGG-GHVIKGWDEGVQG 72
Query: 119 MKAGEHALLHVGWELGYGKEGSFSFPNVSPMADLVYEVVLI 159
           MK G    L +  +LGYG  G+     + P A LV+EV L+
Sbjct: 73  MKVGGVRRLTIPPQLGYGARGAGGV--IPPNATLVFEVELL 111

>pdb|3O5E|A Chain A, Fk1 Domain Of Fkbp51, Crystal Form Vi Length = 144

Iteration: 1
 Score = 42.4 bits (98), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 34/109 (31%), Positives = 52/109 (47%), Gaps = 5/109 (4%)
Query: 54  VTKQIIKEGHGQK-PSKYSTCFLHYRAWAESTRHKFDDTWLEQQPLEMVLGKEKKEMTGL 112
           V K + + G+G++ P      ++HY+    S   KFD +    +P    LGK  + +   
Sbjct: 37  VLKIVKRVGNGEETPMIGDKVYVHYKGKL-SNGKKFDSSHDRNEPFVFSLGK-GQVIKAW 94
Query: 113 AIGVSSMKAGEHALLHVGWELGYGKEGSFSFPNVSPMADLVYEVVLIGF 161
            IGV++MK GE   L    E  YG  G  S P +   A L +E+ L+ F
Sbjct: 95  DIGVATMKKGEICHLLCKPEYAYGSAG--SLPKIPSNATLFFEIELLDF 141

>pdb|4DRH|A Chain A, Co-crystal Structure Of The Ppiase Domain Of Fkbp51, Rapamycin And The Frb Fragment Of Mtor At Low Ph Length = 144

Iteration: 1
 Score = 42.4 bits (98), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 34/109 (31%), Positives = 52/109 (47%), Gaps = 5/109 (4%)
Query: 54  VTKQIIKEGHGQK-PSKYSTCFLHYRAWAESTRHKFDDTWLEQQPLEMVLGKEKKEMTGL 112
           V K + + G+G++ P      ++HY+    S   KFD +    +P    LGK  + +   
Sbjct: 37  VLKIVKRVGNGEETPMIGDKVYVHYKGKL-SNGKKFDSSHDRNEPFVFSLGK-GQVIKAW 94
Query: 113 AIGVSSMKAGEHALLHVGWELGYGKEGSFSFPNVSPMADLVYEVVLIGF 161
            IGV++MK GE   L    E  YG  G  S P +   A L +E+ L+ F
Sbjct: 95  DIGVATMKKGEICHLLCKPEYAYGSAG--SLPKIPSNATLFFEIELLDF 141

>pdb|2KE0|A Chain A, Solution Structure Of Peptidyl-Prolyl Cis-Trans Isomerase From Burkholderia Pseudomallei Length = 117

Iteration: 1
 Score = 42.4 bits (98), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 33/101 (32%), Positives = 45/101 (44%), Gaps = 4/101 (3%)
Query: 59  IKEGHGQKPSKYSTCFLHYRAWAESTRHKFDDTWLEQQPLEMVLGKEKKEMTGLAIGVSS 118
           + EG G +     T  +HY  W  +   KFD +     P   VLG     + G   GV  
Sbjct: 19  LTEGSGAEARAGQTVSVHYTGWL-TDGQKFDSSKDRNDPFAFVLGG-GMVIKGWDEGVQG 76
Query: 119 MKAGEHALLHVGWELGYGKEGSFSFPNVSPMADLVYEVVLI 159
           MK G    L +  +LGYG  G+     + P A LV+EV L+
Sbjct: 77  MKVGGVRRLTIPPQLGYGARGAGGV--IPPNATLVFEVELL 115

>pdb|3O5G|A Chain A, Fk1 Domain Of Fkbp51, Crystal Form I Length = 128

Iteration: 1
 Score = 42.0 bits (97), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 34/109 (31%), Positives = 52/109 (47%), Gaps = 5/109 (4%)
Query: 54  VTKQIIKEGHGQK-PSKYSTCFLHYRAWAESTRHKFDDTWLEQQPLEMVLGKEKKEMTGL 112
           V K + + G+G++ P      ++HY+    S   KFD +    +P    LGK  + +   
Sbjct: 21  VLKIVKRVGNGEETPMIGDKVYVHYKG-KLSNGKKFDSSHDRNEPFVFSLGK-GQVIKAW 78
Query: 113 AIGVSSMKAGEHALLHVGWELGYGKEGSFSFPNVSPMADLVYEVVLIGF 161
            IGV++MK GE   L    E  YG  G  S P +   A L +E+ L+ F
Sbjct: 79  DIGVATMKKGEICHLLCKPEYAYGSAG--SLPKIPSNATLFFEIELLDF 125

>pdb|3UQB|A Chain A, Crystal Structure Of A Smt Fusion Peptidyl-Prolyl Cis-Trans Isomerase With Surface Mutation D44g From Burkholderia Pseudomallei Complexed With Fk506 Length = 209

Iteration: 1
 Score = 42.0 bits (97), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 32/101 (31%), Positives = 44/101 (43%), Gaps = 4/101 (3%)
Query: 59  IKEGHGQKPSKYSTCFLHYRAWAESTRHKFDDTWLEQQPLEMVLGKEKKEMTGLAIGVSS 118
           + EG G +     T  +HY  W  +   KF  +     P   VLG     + G   GV  
Sbjct: 111 LTEGSGAEARAGQTVSVHYTGWL-TDGQKFGSSKDRNDPFAFVLGG-GMVIKGWDEGVQG 168
Query: 119 MKAGEHALLHVGWELGYGKEGSFSFPNVSPMADLVYEVVLI 159
           MK G    L +  +LGYG  G+     + P A LV+EV L+
Sbjct: 169 MKVGGVRRLTIPPQLGYGARGAGGV--IPPNATLVFEVELL 207

>pdb|3O5L|A Chain A, Fk1 Domain Mutant A19t Of Fkbp51, Crystal Form I Length = 128

Iteration: 1
 Score = 42.0 bits (97), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 34/109 (31%), Positives = 52/109 (47%), Gaps = 5/109 (4%)
Query: 54  VTKQIIKEGHGQK-PSKYSTCFLHYRAWAESTRHKFDDTWLEQQPLEMVLGKEKKEMTGL 112
           V K + + G+G++ P      ++HY+    S   KFD +    +P    LGK  + +   
Sbjct: 21  VLKIVKRVGNGEETPMIGDKVYVHYKG-KLSNGKKFDSSHDRNEPFVFSLGK-GQVIKAW 78
Query: 113 AIGVSSMKAGEHALLHVGWELGYGKEGSFSFPNVSPMADLVYEVVLIGF 161
            IGV++MK GE   L    E  YG  G  S P +   A L +E+ L+ F
Sbjct: 79  DIGVATMKKGEICHLLCKPEYAYGSAG--SLPKIPSNATLFFEIELLDF 125

>pdb|1R9H|A Chain A, Structural Genomics Of C.Elegans: Fkbp-Type Peptidylprolyl Isomerase Length = 135

Iteration: 1
 Score = 42.0 bits (97), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 36/106 (33%), Positives = 51/106 (48%), Gaps = 5/106 (4%)
Query: 54  VTKQIIKEGHGQ-KPSKYSTCFLHYRAWAESTRHKFDDTWLEQQPLEMVLGKEKKEMTGL 112
           V K I KEG G  KP+  +T  +HY    E+   KFD +          LG+    + G 
Sbjct: 16  VLKLIKKEGQGVVKPTTGTTVKVHYVGTLENG-TKFDSSRDRGDQFSFNLGR-GNVIKGW 73
Query: 113 AIGVSSMKAGEHALLHVGWELGYGKEGSFSFPNVSPMADLVYEVVL 158
            +GV++M  GE A   +  + GYG  G  S P +   A L++EV L
Sbjct: 74  DLGVATMTKGEVAEFTIRSDYGYGDAG--SPPKIPGGATLIFEVEL 117

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	365
2if4_A	338	ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha,	1e-102
1p5q_A	336	FKBP52, FK506-binding protein 4; isomerase; 2.80A	2e-73
1kt0_A	457	FKBP51, 51 kDa FK506-binding protein; FKBP-like pp	1e-68
1kt0_A	457	FKBP51, 51 kDa FK506-binding protein; FKBP-like pp	1e-17
2f4e_A	180	ATFKBP42; FKBP-like, alpha-beta, signaling protein	4e-57
2fbn_A	198	70 kDa peptidylprolyl isomerase, putative; sulfur	3e-52
3rkv_A	162	Putative peptidylprolyl isomerase; structural geno	4e-50
1ihg_A	370	Cyclophilin 40; ppiase immunophilin tetratricopept	2e-36
2dba_A	148	Smooth muscle cell associated protein-1, isoform 2	8e-29
4gco_A	126	Protein STI-1; structural genomics, PSI-biology, m	3e-22
3q49_B	137	STIP1 homology and U box-containing protein 1; E3	4e-22
3upv_A	126	Heat shock protein STI1; TPR-fold, adaptor protein	9e-22
1elw_A	118	TPR1-domain of HOP; HOP, TPR-domain, peptide-compl	2e-21
1a17_A	166	Serine/threonine protein phosphatase 5; hydrolase,	2e-21
2vyi_A	131	SGTA protein; chaperone, TPR repeat, phosphoprotei	3e-21
2lni_A	133	Stress-induced-phosphoprotein 1; structural genomi	1e-20
3sz7_A	164	HSC70 cochaperone (SGT); TPR domain, GET4, GET5, G	2e-20
2y4t_A	450	DNAJ homolog subfamily C member 3; chaperone, endo	1e-19
2y4t_A	450	DNAJ homolog subfamily C member 3; chaperone, endo	7e-17
2y4t_A	450	DNAJ homolog subfamily C member 3; chaperone, endo	2e-13
2y4t_A	450	DNAJ homolog subfamily C member 3; chaperone, endo	3e-12
2y4t_A	450	DNAJ homolog subfamily C member 3; chaperone, endo	3e-10
2c2l_A	281	CHIP, carboxy terminus of HSP70-interacting protei	2e-19
3ieg_A	359	DNAJ homolog subfamily C member 3; TPR motif, chap	6e-18
3ieg_A	359	DNAJ homolog subfamily C member 3; TPR motif, chap	9e-16
3ieg_A	359	DNAJ homolog subfamily C member 3; TPR motif, chap	1e-12
3ieg_A	359	DNAJ homolog subfamily C member 3; TPR motif, chap	9e-12
3ieg_A	359	DNAJ homolog subfamily C member 3; TPR motif, chap	3e-06
4gcn_A	127	Protein STI-1; structural genomics, PSI-biology, m	5e-17
1elr_A	131	TPR2A-domain of HOP; HOP, TPR-domain, peptide-comp	5e-17
3b7x_A	134	FK506-binding protein 6; isomerase, repeat, rotama	2e-16
3uq3_A	258	Heat shock protein STI1; HSP90, peptide binding, c	3e-16
3uq3_A	258	Heat shock protein STI1; HSP90, peptide binding, c	9e-15
3uq3_A	258	Heat shock protein STI1; HSP90, peptide binding, c	2e-10
3uq3_A	258	Heat shock protein STI1; HSP90, peptide binding, c	9e-09
3uq3_A	258	Heat shock protein STI1; HSP90, peptide binding, c	6e-06
1wao_1	477	Serine/threonine protein phosphatase 5; hydrolase,	1e-15
2l6j_A	111	TPR repeat-containing protein associated with HSP;	1e-15
2jwx_A	157	FKBP38NTD, FK506-binding protein 8 variant; apopto	7e-15
2d9f_A	135	FK506-binding protein 8 variant; FKBP, rapamycin,	8e-15
2xcb_A	142	PCRH, regulatory protein PCRH; protein transport,	1e-14
2xcb_A	142	PCRH, regulatory protein PCRH; protein transport,	3e-06
3jxv_A	356	70 kDa peptidyl-prolyl isomerase; FKBP- binding do	3e-14
3jxv_A	356	70 kDa peptidyl-prolyl isomerase; FKBP- binding do	2e-13
3jxv_A	356	70 kDa peptidyl-prolyl isomerase; FKBP- binding do	1e-07
2awg_A	118	38 kDa FK-506 binding protein; FKBP-type, ppiase,	4e-14
3fp2_A	537	TPR repeat-containing protein YHR117W; TOM71, mito	7e-14
3fp2_A	537	TPR repeat-containing protein YHR117W; TOM71, mito	7e-12
3fp2_A	537	TPR repeat-containing protein YHR117W; TOM71, mito	2e-11
3fp2_A	537	TPR repeat-containing protein YHR117W; TOM71, mito	1e-10
3fp2_A	537	TPR repeat-containing protein YHR117W; TOM71, mito	3e-07
3fp2_A	537	TPR repeat-containing protein YHR117W; TOM71, mito	2e-06
3gyz_A	151	Chaperone protein IPGC; asymmetric homodimer, tetr	2e-13
3gyz_A	151	Chaperone protein IPGC; asymmetric homodimer, tetr	5e-05
2gw1_A	514	Mitochondrial precursor proteins import receptor;	2e-13
2gw1_A	514	Mitochondrial precursor proteins import receptor;	1e-12
2gw1_A	514	Mitochondrial precursor proteins import receptor;	6e-11
2gw1_A	514	Mitochondrial precursor proteins import receptor;	7e-11
2gw1_A	514	Mitochondrial precursor proteins import receptor;	1e-10
2gw1_A	514	Mitochondrial precursor proteins import receptor;	6e-06
2gw1_A	514	Mitochondrial precursor proteins import receptor;	2e-04
2vn1_A	129	70 kDa peptidylprolyl isomerase; FKBP, FK506, TPR	3e-13
3kz7_A	119	FK506-binding protein 3; FKPB ppiase rapamycin, is	1e-12
3v6t_A	499	DHAX3; tandem repeats, DNA specific binding protei	2e-12
3v6t_A	499	DHAX3; tandem repeats, DNA specific binding protei	1e-10
3v6t_A	499	DHAX3; tandem repeats, DNA specific binding protei	9e-10
3v6t_A	499	DHAX3; tandem repeats, DNA specific binding protei	1e-09
3v6t_A	499	DHAX3; tandem repeats, DNA specific binding protei	1e-09
3v6t_A	499	DHAX3; tandem repeats, DNA specific binding protei	1e-09
3v6t_A	499	DHAX3; tandem repeats, DNA specific binding protei	3e-09
3v6t_A	499	DHAX3; tandem repeats, DNA specific binding protei	3e-08
3v6t_A	499	DHAX3; tandem repeats, DNA specific binding protei	6e-07
2ho1_A	252	Type 4 fimbrial biogenesis protein PILF; type IV p	2e-12
2ho1_A	252	Type 4 fimbrial biogenesis protein PILF; type IV p	1e-08
2ho1_A	252	Type 4 fimbrial biogenesis protein PILF; type IV p	2e-08
2ho1_A	252	Type 4 fimbrial biogenesis protein PILF; type IV p	3e-05
2kck_A	112	TPR repeat; tetratricopeptide repeat, structural g	3e-12
2kck_A	112	TPR repeat; tetratricopeptide repeat, structural g	4e-06
2ppn_A	107	FK506-binding protein 1A; high resolution protein	3e-12
3hym_B	330	Cell division cycle protein 16 homolog; APC, anaph	3e-12
3hym_B	330	Cell division cycle protein 16 homolog; APC, anaph	4e-10
3hym_B	330	Cell division cycle protein 16 homolog; APC, anaph	2e-06
3hym_B	330	Cell division cycle protein 16 homolog; APC, anaph	1e-04
3hym_B	330	Cell division cycle protein 16 homolog; APC, anaph	2e-04
3hym_B	330	Cell division cycle protein 16 homolog; APC, anaph	7e-04
3urz_A	208	Uncharacterized protein; tetratricopeptide repeats	3e-12
3urz_A	208	Uncharacterized protein; tetratricopeptide repeats	4e-09
1q1c_A	280	FK506-binding protein 4; rotamase, TPR repeat, nuc	4e-12
1q1c_A	280	FK506-binding protein 4; rotamase, TPR repeat, nuc	7e-11
2vq2_A	225	PILW, putative fimbrial biogenesis and twitching m	5e-12
2vq2_A	225	PILW, putative fimbrial biogenesis and twitching m	2e-06
2vq2_A	225	PILW, putative fimbrial biogenesis and twitching m	2e-05
2xpi_A	597	Anaphase-promoting complex subunit CUT9; cell cycl	5e-12
2xpi_A	597	Anaphase-promoting complex subunit CUT9; cell cycl	2e-10
2xpi_A	597	Anaphase-promoting complex subunit CUT9; cell cycl	2e-08
2xpi_A	597	Anaphase-promoting complex subunit CUT9; cell cycl	4e-08
2xpi_A	597	Anaphase-promoting complex subunit CUT9; cell cycl	4e-07
2xpi_A	597	Anaphase-promoting complex subunit CUT9; cell cycl	6e-06
1r9h_A	135	FKB-6, FK506 binding protein family; structural ge	9e-12
1u79_A	129	FKBP-type peptidyl-prolyl CIS-trans isomerase 3; T	1e-11
1hh8_A	213	P67PHOX, NCF-2, neutrophil cytosol factor 2; cell	1e-11
1hh8_A	213	P67PHOX, NCF-2, neutrophil cytosol factor 2; cell	2e-09
1w3b_A	388	UDP-N-acetylglucosamine--peptide N-acetylglucosami	1e-11
1w3b_A	388	UDP-N-acetylglucosamine--peptide N-acetylglucosami	2e-11
1w3b_A	388	UDP-N-acetylglucosamine--peptide N-acetylglucosami	3e-11
1w3b_A	388	UDP-N-acetylglucosamine--peptide N-acetylglucosami	3e-11
1w3b_A	388	UDP-N-acetylglucosamine--peptide N-acetylglucosami	3e-11
1w3b_A	388	UDP-N-acetylglucosamine--peptide N-acetylglucosami	1e-09
1w3b_A	388	UDP-N-acetylglucosamine--peptide N-acetylglucosami	8e-08
3u4t_A	272	TPR repeat-containing protein; structural genomics	2e-11
3u4t_A	272	TPR repeat-containing protein; structural genomics	7e-11
3u4t_A	272	TPR repeat-containing protein; structural genomics	4e-07
3u4t_A	272	TPR repeat-containing protein; structural genomics	1e-05
3u4t_A	272	TPR repeat-containing protein; structural genomics	1e-05
1yat_A	113	FK506 binding protein; HET: FK5; 2.50A {Saccharomy	2e-11
3o5q_A	128	Peptidyl-prolyl CIS-trans isomerase FKBP5; FK-506	2e-11
2q7f_A	243	YRRB protein; TPR, protein binding; 2.49A {Bacillu	3e-11
2q7f_A	243	YRRB protein; TPR, protein binding; 2.49A {Bacillu	1e-10
2q7f_A	243	YRRB protein; TPR, protein binding; 2.49A {Bacillu	8e-09
2q7f_A	243	YRRB protein; TPR, protein binding; 2.49A {Bacillu	4e-07
2q7f_A	243	YRRB protein; TPR, protein binding; 2.49A {Bacillu	6e-07
4dip_A	125	Peptidyl-prolyl CIS-trans isomerase FKBP14; struct	4e-11
2pbc_A	102	FK506-binding protein 2; endoplasmic reticulum, is	1e-10
3tax_A	723	UDP-N-acetylglucosamine--peptide N- acetylglucosam	2e-10
3tax_A	723	UDP-N-acetylglucosamine--peptide N- acetylglucosam	1e-09
3tax_A	723	UDP-N-acetylglucosamine--peptide N- acetylglucosam	2e-05
3o5e_A	144	Peptidyl-prolyl CIS-trans isomerase FKBP5; FK-506	6e-10
2hr2_A	159	Hypothetical protein; alpha-alpha superhelix fold,	6e-10
1xnf_A	275	Lipoprotein NLPI; TPR, tetratricopeptide, structur	1e-09
1xnf_A	275	Lipoprotein NLPI; TPR, tetratricopeptide, structur	2e-09
1xnf_A	275	Lipoprotein NLPI; TPR, tetratricopeptide, structur	1e-05
2kat_A	115	Uncharacterized protein; NESG, structure, structur	1e-09
3as5_A	186	MAMA; tetratricopeptide repeats (TPR) containing p	1e-09
3as5_A	186	MAMA; tetratricopeptide repeats (TPR) containing p	3e-09
3as5_A	186	MAMA; tetratricopeptide repeats (TPR) containing p	1e-05
2lgo_A	130	FKBP; infectious disease, isomerase, giardiasis, s	2e-09
1q6h_A	224	FKBP-type peptidyl-prolyl CIS-trans isomerase FKP;	2e-09
2pl2_A	217	Hypothetical conserved protein TTC0263; TPR, prote	3e-09
2pl2_A	217	Hypothetical conserved protein TTC0263; TPR, prote	6e-07
2pl2_A	217	Hypothetical conserved protein TTC0263; TPR, prote	3e-05
2pl2_A	217	Hypothetical conserved protein TTC0263; TPR, prote	3e-05
2y78_A	133	Peptidyl-prolyl CIS-trans isomerase; MIP, ppiase,	5e-09
3uf8_A	209	Ubiquitin-like protein SMT3, peptidyl-prolyl CIS-	7e-09
2fo7_A	136	Synthetic consensus TPR protein; tetratricopeptide	7e-09
2fo7_A	136	Synthetic consensus TPR protein; tetratricopeptide	4e-04
1na0_A	125	Designed protein CTPR3; de novo protein; HET: IPT;	1e-08
1na0_A	125	Designed protein CTPR3; de novo protein; HET: IPT;	7e-04
2vgx_A	148	Chaperone SYCD; alternative dimer assembly, tetrat	1e-08
2vgx_A	148	Chaperone SYCD; alternative dimer assembly, tetrat	2e-05
3k9i_A	117	BH0479 protein; putative protein binding protein,	2e-08
1jvw_A	167	Macrophage infectivity potentiator; chagas disease	2e-08
3ugm_A	1047	TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xan	2e-08
3ugm_A	1047	TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xan	2e-08
3ugm_A	1047	TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xan	2e-08
3ugm_A	1047	TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xan	3e-08
3ugm_A	1047	TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xan	5e-08
3ugm_A	1047	TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xan	7e-08
3ugm_A	1047	TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xan	8e-08
3ugm_A	1047	TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xan	9e-08
3ugm_A	1047	TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xan	1e-07
3ugm_A	1047	TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xan	1e-05
3ugm_A	1047	TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xan	1e-05
3cv0_A	327	Peroxisome targeting signal 1 receptor PEX5; TPR m	2e-08
3cv0_A	327	Peroxisome targeting signal 1 receptor PEX5; TPR m	9e-08
3cv0_A	327	Peroxisome targeting signal 1 receptor PEX5; TPR m	1e-07
3cv0_A	327	Peroxisome targeting signal 1 receptor PEX5; TPR m	1e-06
3cv0_A	327	Peroxisome targeting signal 1 receptor PEX5; TPR m	1e-04
2vsy_A	568	XCC0866; transferase, glycosyl transferase, GT-B,	2e-08
2vsy_A	568	XCC0866; transferase, glycosyl transferase, GT-B,	3e-07
2vsy_A	568	XCC0866; transferase, glycosyl transferase, GT-B,	8e-04
3mkr_A	291	Coatomer subunit epsilon; tetratricopeptide repeat	2e-08
1fd9_A	213	Protein (macrophage infectivity potentiator prote;	4e-08
4eqf_A	365	PEX5-related protein; accessory protein, tetratric	4e-08
4eqf_A	365	PEX5-related protein; accessory protein, tetratric	8e-08
4eqf_A	365	PEX5-related protein; accessory protein, tetratric	3e-06
1hxi_A	121	PEX5, peroxisome targeting signal 1 receptor PEX5;	5e-08
1hxi_A	121	PEX5, peroxisome targeting signal 1 receptor PEX5;	6e-07
4g1t_A	472	Interferon-induced protein with tetratricopeptide	6e-08
1fch_A	368	Peroxisomal targeting signal 1 receptor; protein-p	6e-08
1fch_A	368	Peroxisomal targeting signal 1 receptor; protein-p	3e-07
1fch_A	368	Peroxisomal targeting signal 1 receptor; protein-p	3e-07
1fch_A	368	Peroxisomal targeting signal 1 receptor; protein-p	2e-05
1fch_A	368	Peroxisomal targeting signal 1 receptor; protein-p	1e-04
3oe2_A	219	Peptidyl-prolyl CIS-trans isomerase; FKBP, ppiase,	2e-07
3ma5_A	100	Tetratricopeptide repeat domain protein; NESG, str	6e-07
3ma5_A	100	Tetratricopeptide repeat domain protein; NESG, str	5e-04
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	5e-06
2e2e_A	177	Formate-dependent nitrite reductase complex NRFG;	1e-05
4abn_A	474	Tetratricopeptide repeat protein 5; P53 cofactor,	1e-05
4abn_A	474	Tetratricopeptide repeat protein 5; P53 cofactor,	1e-05
4abn_A	474	Tetratricopeptide repeat protein 5; P53 cofactor,	1e-04
4abn_A	474	Tetratricopeptide repeat protein 5; P53 cofactor,	1e-04
2kc7_A	99	BFR218_protein; tetratricopeptide repeat, all-alph	4e-05
2ifu_A	307	Gamma-SNAP; membrane fusion, snare complex disasse	5e-05
1na3_A	91	Designed protein CTPR2; de novo protein; HET: IPT;	2e-04
1na3_A	91	Designed protein CTPR2; de novo protein; HET: IPT;	4e-04
3sf4_A	406	G-protein-signaling modulator 2; tetratricopeptide	5e-04

>2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana} Length = 338

 Score =  305 bits (782), Expect = e-102
 Identities = 255/340 (75%), Positives = 294/340 (86%), Gaps = 3/340 (0%)

Query: 1   MEEVDGEPKSQAPGEVGESEIVTEDAAFVRGEPPQDGDGPPKVDSEVEVLHEKVTKQIIK 60
           M+E     + Q      ESEIVTE +A V  EP Q+G+ PPKVDSE EVL EKV+KQIIK
Sbjct: 1   MDE---SLEHQTQTHDQESEIVTEGSAVVHSEPSQEGNVPPKVDSEAEVLDEKVSKQIIK 57

Query: 61  EGHGQKPSKYSTCFLHYRAWAESTRHKFDDTWLEQQPLEMVLGKEKKEMTGLAIGVSSMK 120
           EGHG KPSKYSTCFLHYRAW ++++HKF+DTW EQQP+E+VLGKEKKE+ GLAIGV+SMK
Sbjct: 58  EGHGSKPSKYSTCFLHYRAWTKNSQHKFEDTWHEQQPIELVLGKEKKELAGLAIGVASMK 117

Query: 121 AGEHALLHVGWELGYGKEGSFSFPNVSPMADLVYEVVLIGFDETKEGKARSDMTVEERIG 180
           +GE AL+HVGWEL YGKEG+FSFPNV PMADL+YEV +IGFDETKEGKARSDMTVEERIG
Sbjct: 118 SGERALVHVGWELAYGKEGNFSFPNVPPMADLLYEVEVIGFDETKEGKARSDMTVEERIG 177

Query: 181 AADRRKMDGNALFKEEKLEEAMQQYEMAIAYMGDDFMFQLFGKYRDMALAVKNPCHLNMA 240
           AADRRKMDGN+LFKEEKLEEAMQQYEMAIAYMGDDFMFQL+GKY+DMALAVKNPCHLN+A
Sbjct: 178 AADRRKMDGNSLFKEEKLEEAMQQYEMAIAYMGDDFMFQLYGKYQDMALAVKNPCHLNIA 237

Query: 241 ACLLKLKRYEEAIGQCSLVLGEDENNVKALFRRGKARAELGQTDAAREDFLKAGKFAPED 300
           ACL+KLKRY+EAIG C++VL E+E N KALFRRGKA+AELGQ D+AR+DF KA K+AP+D
Sbjct: 238 ACLIKLKRYDEAIGHCNIVLTEEEKNPKALFRRGKAKAELGQMDSARDDFRKAQKYAPDD 297

Query: 301 KSIARELRLLAEHEKAVYKKQKEIYKGIFGPRPEPKQKKN 340
           K+I RELR LAE EKA+Y+KQKE+YKGIF  + E   K  
Sbjct: 298 KAIRRELRALAEQEKALYQKQKEMYKGIFKGKDEGGAKSK 337

>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A Length = 336

 Score =  230 bits (588), Expect = 2e-73
 Identities = 76/291 (26%), Positives = 139/291 (47%), Gaps = 16/291 (5%)

Query: 53  KVTKQIIKEGHG-QKPSKYSTCFLHYRAWAESTRHKFDDTWLEQQPLEMVLGKEKK--EM 109
            + ++I   G G  KP++ +   +    +       + D   +Q+ L   +G+ +     
Sbjct: 26  GIIRRIQTRGEGYAKPNEGAIVEVALEGY-------YKDKLFDQRELRFEIGEGENLDLP 78

Query: 110 TGLAIGVSSMKAGEHALLHVGWELGYGKEGSFSFPNVSPMADLVYEVVLIGFDETKEGKA 169
            GL   +  M+ GEH+++++     +G  G   F  + P A+L YE+ L  F++ KE   
Sbjct: 79  YGLERAIQRMEKGEHSIVYLKPSYAFGSVGKEKF-QIPPNAELKYELHLKSFEKAKE--- 134

Query: 170 RSDMTVEERIGAADRRKMDGNALFKEEKLEEAMQQYEMAIAYMGDDFMFQLFGKYRDMAL 229
             +M  EE++  +   K  G   FKE K ++A+ QY+  ++++  +  F    +    A 
Sbjct: 135 SWEMNSEEKLEQSTIVKERGTVYFKEGKYKQALLQYKKIVSWLEYESSFS--NEEAQKAQ 192

Query: 230 AVKNPCHLNMAACLLKLKRYEEAIGQCSLVLGEDENNVKALFRRGKARAELGQTDAARED 289
           A++   HLN+A C LKL+ +  AI  C+  L  D NN K L RRG+A   +   + AR D
Sbjct: 193 ALRLASHLNLAMCHLKLQAFSAAIESCNKALELDSNNEKGLSRRGEAHLAVNDFELARAD 252

Query: 290 FLKAGKFAPEDKSIARELRLLAEHEKAVYKKQKEIYKGIFGPRPEPKQKKN 340
           F K  +  P +K+   +L +  +  +    ++K++Y  +F    E + K  
Sbjct: 253 FQKVLQLYPNNKAAKTQLAVCQQRIRRQLAREKKLYANMFERLAEEENKAK 303

>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A Length = 457

 Score =  221 bits (565), Expect = 1e-68
 Identities = 76/337 (22%), Positives = 142/337 (42%), Gaps = 23/337 (6%)

Query: 15  EVGESEIVTEDAAFVRGEPPQDGDGPPKVDSEVEVL------------HEKVTKQIIKEG 62
           + GE   +     +  G        P       E+                + +   K  
Sbjct: 98  KRGEICHLLCKPEYAYGSAGSLPKIPSNATLFFEIELLDFKGEDLFEDGGIIRRTKRKGE 157

Query: 63  HGQKPSKYSTCFLHYRAWAESTRHKFDDTWLEQQPLEMVLGKEKKEMTGLAIGVSSMKAG 122
               P++ +T  +H           FD   +      +  G++     G+   +  M+  
Sbjct: 158 GYSNPNEGATVEIHLEGRCGGR--MFDCRDV---AFTVGEGEDHDIPIGIDKALEKMQRE 212

Query: 123 EHALLHVGWELGYGKEGSFSFPNVSPMADLVYEVVLIGFDETKEGKARSDMTVEERIGAA 182
           E  +L++G   G+G+ G   F  + P A+L+YEV L  F++ KE     +M  +E++  A
Sbjct: 213 EQCILYLGPRYGFGEAGKPKF-GIEPNAELIYEVTLKSFEKAKE---SWEMDTKEKLEQA 268

Query: 183 DRRKMDGNALFKEEKLEEAMQQYEMAIAYMGDDFMFQLFGKYRDMALAVKNPCHLNMAAC 242
              K  G   FK  K  +A+ QY   ++++  +  + L  K    + +      LN+A C
Sbjct: 269 AIVKEKGTVYFKGGKYMQAVIQYGKIVSWL--EMEYGLSEKESKASESFLLAAFLNLAMC 326

Query: 243 LLKLKRYEEAIGQCSLVLGEDENNVKALFRRGKARAELGQTDAAREDFLKAGKFAPEDKS 302
            LKL+ Y +A+  C   LG D  N K L+RRG+A+  + + ++A+ DF K  +  P++K+
Sbjct: 327 YLKLREYTKAVECCDKALGLDSANEKGLYRRGEAQLLMNEFESAKGDFEKVLEVNPQNKA 386

Query: 303 IARELRLLAEHEKAVYKKQKEIYKGIFGPRPEPKQKK 339
              ++ +  +  K   ++ + IY  +F    E   K+
Sbjct: 387 ARLQISMCQKKAKEHNERDRRIYANMFKKFAEQDAKE 423

>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A Length = 457

 Score = 82.8 bits (204), Expect = 1e-17
 Identities = 41/168 (24%), Positives = 66/168 (39%), Gaps = 6/168 (3%)

Query: 23  TEDAAFVRGEPPQDGDGPPKVDSEVEVLHEKVTKQIIKEGHG-QKPSKYSTCFLHYRAWA 81
           T++ A    E P         D   +     V K + + G+G + P      ++HY+   
Sbjct: 3   TDEGAKNNEESPTATVAEQGEDITSKK-DRGVLKIVKRVGNGEETPMIGDKVYVHYKGKL 61

Query: 82  ESTRHKFDDTWLEQQPLEMVLGKEKKEMTGLAIGVSSMKAGEHALLHVGWELGYGKEGSF 141
            +   KFD +    +P    LGK  + +    IGV++MK GE   L    E  YG  G  
Sbjct: 62  SN-GKKFDSSHDRNEPFVFSLGK-GQVIKAWDIGVATMKRGEICHLLCKPEYAYGSAG-- 117

Query: 142 SFPNVSPMADLVYEVVLIGFDETKEGKARSDMTVEERIGAADRRKMDG 189
           S P +   A L +E+ L+ F      +    +   +R G       +G
Sbjct: 118 SLPKIPSNATLFFEIELLDFKGEDLFEDGGIIRRTKRKGEGYSNPNEG 165

>2f4e_A ATFKBP42; FKBP-like, alpha-beta, signaling protein; 2.32A {Arabidopsis thaliana} Length = 180

 Score =  183 bits (465), Expect = 4e-57
 Identities = 135/183 (73%), Positives = 155/183 (84%), Gaps = 3/183 (1%)

Query: 1   MEEVDGEPKSQAPGEVGESEIVTEDAAFVRGEPPQDGDGPPKVDSEVEVLHEKVTKQIIK 60
           M+E     + Q      ESEIVTE +A V  EP Q+G+ PPKVDSE EVL EKV+KQIIK
Sbjct: 1   MDE---SLEHQTQTHDQESEIVTEGSAVVHSEPSQEGNVPPKVDSEAEVLDEKVSKQIIK 57

Query: 61  EGHGQKPSKYSTCFLHYRAWAESTRHKFDDTWLEQQPLEMVLGKEKKEMTGLAIGVSSMK 120
           EGHG KPSKYSTCFLHYRAW ++++HKF+DTW EQQP+E+VLGKEKKE+ GLAIGV+SMK
Sbjct: 58  EGHGSKPSKYSTCFLHYRAWTKNSQHKFEDTWHEQQPIELVLGKEKKELAGLAIGVASMK 117

Query: 121 AGEHALLHVGWELGYGKEGSFSFPNVSPMADLVYEVVLIGFDETKEGKARSDMTVEERIG 180
           +GE AL+HVGWEL YGKEG+FSFPNV PMADL+YEV +IGFDETKEGKARSDMTVEERIG
Sbjct: 118 SGERALVHVGWELAYGKEGNFSFPNVPPMADLLYEVEVIGFDETKEGKARSDMTVEERIG 177

Query: 181 AAD 183
           AAD
Sbjct: 178 AAD 180

>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1 Length = 198

 Score =  171 bits (435), Expect = 3e-52
 Identities = 58/183 (31%), Positives = 89/183 (48%), Gaps = 3/183 (1%)

Query: 158 LIGFDETKEGKARSDMTVEERIGAADRRKMDGNALFKEEKLEEAMQQYEMAIAYMGDDFM 217
            + F   K  K+  D T EE++ +A   K +GN  FK+ ++ EA+ +Y+ A+ +      
Sbjct: 16  NLYFQGAK--KSIYDYTDEEKVQSAFDIKEEGNEFFKKNEINEAIVKYKEALDFFIHTEE 73

Query: 218 FQLFGKYRDMALAVKNPCHLNMAACLLKLKRYEEAIGQCSLVLGEDENNVKALFRRGKAR 277
           +       D    ++  C+LN+A C  K K Y +AI   S VL  D+NNVKAL++ G A 
Sbjct: 74  WD-DQILLDKKKNIEISCNLNLATCYNKNKDYPKAIDHASKVLKIDKNNVKALYKLGVAN 132

Query: 278 AELGQTDAAREDFLKAGKFAPEDKSIARELRLLAEHEKAVYKKQKEIYKGIFGPRPEPKQ 337
              G  + A+E+  KA    P +  I     L     K   KK K  + G+F   P  ++
Sbjct: 133 MYFGFLEEAKENLYKAASLNPNNLDIRNSYELCVNKLKEARKKDKLTFGGMFDKGPLYEE 192

Query: 338 KKN 340
           KKN
Sbjct: 193 KKN 195

>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans} Length = 162

 Score =  164 bits (417), Expect = 4e-50
 Identities = 44/161 (27%), Positives = 74/161 (45%), Gaps = 2/161 (1%)

Query: 173 MTVEERIGAADRRKMDGNALFKEEKLEEAMQQYEMAIAYMGDDFMFQLFGKYRDMAL-AV 231
              ++++ + +  +  GN LF ++  +EA+  Y  A+  +    + +  G+   + L   
Sbjct: 2   NAEDDKLKSVEALRQKGNELFVQKDYKEAIDAYRDALTRLDTLILREKPGEPEWVELDRK 61

Query: 232 KNPCHLNMAACLLKLKRYEEAIGQCSLVLGEDENNVKALFRRGKARAELGQTDAAREDFL 291
             P + NM+ C L +    EA    S VL  +E N KALFRR KAR    + D A ED  
Sbjct: 62  NIPLYANMSQCYLNIGDLHEAEETSSEVLKREETNEKALFRRAKARIAAWKLDEAEEDLK 121

Query: 292 KAGKFAPEDKS-IARELRLLAEHEKAVYKKQKEIYKGIFGP 331
              +  P   S +ARE++++ E         +  Y  +F P
Sbjct: 122 LLLRNHPAAASVVAREMKIVTERRAEKKADSRVTYSKMFQP 162

>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A Length = 370

 Score =  134 bits (340), Expect = 2e-36
 Identities = 48/159 (30%), Positives = 75/159 (47%), Gaps = 1/159 (0%)

Query: 172 DMTVEERIGAADRRKMDGNALFKEEKLEEAMQQYEMAIAYMGDDFMFQLFGKYRDMALAV 231
              V++ +  ++  K  GN  FK +  E A+++Y   + Y+ +                V
Sbjct: 213 LKDVDKILLISEDLKNIGNTFFKSQNWEMAIKKYTKVLRYV-EGSRAAAEDADGAKLQPV 271

Query: 232 KNPCHLNMAACLLKLKRYEEAIGQCSLVLGEDENNVKALFRRGKARAELGQTDAAREDFL 291
              C LN+ AC LK+  ++ A+  C   L  D +N KAL+RR +    L + D A  D  
Sbjct: 272 ALSCVLNIGACKLKMSDWQGAVDSCLEALEIDPSNTKALYRRAQGWQGLKEYDQALADLK 331

Query: 292 KAGKFAPEDKSIARELRLLAEHEKAVYKKQKEIYKGIFG 330
           KA + APEDK+I  EL  + +  KA   K+K  Y  +F 
Sbjct: 332 KAQEIAPEDKAIQAELLKVKQKIKAQKDKEKAAYAKMFA 370

>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 148

 Score =  108 bits (271), Expect = 8e-29
 Identities = 37/133 (27%), Positives = 59/133 (44%), Gaps = 14/133 (10%)

Query: 176 EERIGAADRRKMDGNALFKEEKLEEAMQQYEMAIAYMGDDFMFQLFGKYRDMALAVKNPC 235
                + ++ + +GN LFK      A+  Y  A+                D     +   
Sbjct: 22  TPGASSVEQLRKEGNELFKCGDYGGALAAYTQALGL--------------DATPQDQAVL 67

Query: 236 HLNMAACLLKLKRYEEAIGQCSLVLGEDENNVKALFRRGKARAELGQTDAAREDFLKAGK 295
           H N AAC LKL+ Y++A  + S  + +D  +VKAL+RR +A  +LG+ D A  D  +   
Sbjct: 68  HRNRAACHLKLEDYDKAETEASKAIEKDGGDVKALYRRSQALEKLGRLDQAVLDLQRCVS 127

Query: 296 FAPEDKSIARELR 308
             P++K     LR
Sbjct: 128 LEPKNKVFQEALR 140

>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans} Length = 126

 Score = 90.0 bits (224), Expect = 3e-22
 Identities = 26/127 (20%), Positives = 47/127 (37%), Gaps = 17/127 (13%)

Query: 182 ADRRKMDGNALFKEEKLEEAMQQYEMAIAYMGDDFMFQLFGKYRDMALAVKNPCHLNMAA 241
           A   K  GN  FK+     AM+ Y  A+    ++ +                  + N AA
Sbjct: 13  AQEEKNKGNEYFKKGDYPTAMRHYNEAVKRDPENAIL-----------------YSNRAA 55

Query: 242 CLLKLKRYEEAIGQCSLVLGEDENNVKALFRRGKARAELGQTDAAREDFLKAGKFAPEDK 301
           CL KL  ++ A+  C   +  D   +K   R+      + +   A+  +  A +  P ++
Sbjct: 56  CLTKLMEFQRALDDCDTCIRLDSKFIKGYIRKAACLVAMREWSKAQRAYEDALQVDPSNE 115

Query: 302 SIARELR 308
                +R
Sbjct: 116 EAREGVR 122

>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B* Length = 137

 Score = 90.1 bits (224), Expect = 4e-22
 Identities = 36/150 (24%), Positives = 57/150 (38%), Gaps = 19/150 (12%)

Query: 176 EERIGAADRRKMDGNALFKEEKLEEAMQQYEMAIAYMGDDFMFQLFGKYRDMALAVKNPC 235
             +  +A   K  GN LF   K  EA   Y  AI       ++                 
Sbjct: 3   HMKSPSAQELKEQGNRLFVGRKYPEAAACYGRAITRNPLVAVY----------------- 45

Query: 236 HLNMAACLLKLKRYEEAIGQCSLVLGEDENNVKALFRRGKARAELGQTDAAREDFLKAGK 295
           + N A C LK+++ E+A+  C   L  D  +VKA F  G+ + E+   D A  +  +A  
Sbjct: 46  YTNRALCYLKMQQPEQALADCRRALELDGQSVKAHFFLGQCQLEMESYDEAIANLQRAYS 105

Query: 296 FAPEDKSIARE--LRLLAEHEKAVYKKQKE 323
            A E +    +     L   +K  +   +E
Sbjct: 106 LAKEQRLNFGDDIPSALRIAKKKRWNSIEE 135

>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae} Length = 126

 Score = 88.5 bits (220), Expect = 9e-22
 Identities = 28/140 (20%), Positives = 53/140 (37%), Gaps = 18/140 (12%)

Query: 182 ADRRKMDGNALFKEEKLEEAMQQYEMAIAYMGDDFMFQLFGKYRDMALAVKNPCHLNMAA 241
           A+  +++G   F +     A++ Y   I    +D                    + N AA
Sbjct: 4   AEEARLEGKEYFTKSDWPNAVKAYTEMIKRAPEDARG-----------------YSNRAA 46

Query: 242 CLLKLKRYEEAIGQCSLVLGEDENNVKALFRRGKARAELGQTDAAREDFLKAGKFAPEDK 301
            L KL  + EAI  C+  + +D N V+A  R+  A+  + +  +A E    A     E  
Sbjct: 47  ALAKLMSFPEAIADCNKAIEKDPNFVRAYIRKATAQIAVKEYASALETLDAARTKDAEVN 106

Query: 302 SIARELRLLAEHEKAVYKKQ 321
           +     R + +      +++
Sbjct: 107 N-GSSAREIDQLYYKASQQR 125

>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1 Length = 118

 Score = 87.6 bits (218), Expect = 2e-21
 Identities = 20/127 (15%), Positives = 42/127 (33%), Gaps = 17/127 (13%)

Query: 182 ADRRKMDGNALFKEEKLEEAMQQYEMAIAYMGDDFMFQLFGKYRDMALAVKNPCHLNMAA 241
            +  K  GN       +++A+Q Y  AI     + +                  + N +A
Sbjct: 4   VNELKEKGNKALSVGNIDDALQCYSEAIKLDPHNHVL-----------------YSNRSA 46

Query: 242 CLLKLKRYEEAIGQCSLVLGEDENNVKALFRRGKARAELGQTDAAREDFLKAGKFAPEDK 301
              K   Y++A       +    +  K   R+  A   L + + A+  + +  K    + 
Sbjct: 47  AYAKKGDYQKAYEDGCKTVDLKPDWGKGYSRKAAALEFLNRFEEAKRTYEEGLKHEANNP 106

Query: 302 SIARELR 308
            +   L+
Sbjct: 107 QLKEGLQ 113

>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A Length = 166

 Score = 89.0 bits (221), Expect = 2e-21
 Identities = 34/154 (22%), Positives = 60/154 (38%), Gaps = 20/154 (12%)

Query: 170 RSDMTVEERIGAADRRKMDGNALFKEEKLEEAMQQYEMAIAYMGDDFMFQLFGKYRDMAL 229
           R +   +  +  A+  K   N  FK +  E A++ Y  AI     + ++           
Sbjct: 1   RDEPPADGALKRAEELKTQANDYFKAKDYENAIKFYSQAIELNPSNAIY----------- 49

Query: 230 AVKNPCHLNMAACLLKLKRYEEAIGQCSLVLGEDENNVKALFRRGKARAELGQTDAARED 289
                 + N +   L+ + Y  A+G  +  +  D+  +K  +RR  +   LG+  AA  D
Sbjct: 50  ------YGNRSLAYLRTECYGYALGDATRAIELDKKYIKGYYRRAASNMALGKFRAALRD 103

Query: 290 FLKAGKFAPEDKSIARELRLLAEHEKAVYKKQKE 323
           +    K  P DK    + +   E  K V +K  E
Sbjct: 104 YETVVKVKPHDKDAKMKYQ---ECNKIVKQKAFE 134

>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1 Length = 131

 Score = 87.3 bits (217), Expect = 3e-21
 Identities = 34/136 (25%), Positives = 52/136 (38%), Gaps = 17/136 (12%)

Query: 173 MTVEERIGAADRRKMDGNALFKEEKLEEAMQQYEMAIAYMGDDFMFQLFGKYRDMALAVK 232
           +  EE    A+R K +GN   K E  E A+  Y  AI     + ++              
Sbjct: 3   LGSEEDSAEAERLKTEGNEQMKVENFEAAVHFYGKAIELNPANAVY-------------- 48

Query: 233 NPCHLNMAACLLKLKRYEEAIGQCSLVLGEDENNVKALFRRGKARAELGQTDAAREDFLK 292
                N AA   KL  Y  A+  C   +  D    KA  R G A + L +   A   + K
Sbjct: 49  ---FCNRAAAYSKLGNYAGAVQDCERAICIDPAYSKAYGRMGLALSSLNKHVEAVAYYKK 105

Query: 293 AGKFAPEDKSIARELR 308
           A +  P++++    L+
Sbjct: 106 ALELDPDNETYKSNLK 121

>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens} Length = 133

 Score = 85.8 bits (213), Expect = 1e-20
 Identities = 27/127 (21%), Positives = 43/127 (33%), Gaps = 17/127 (13%)

Query: 182 ADRRKMDGNALFKEEKLEEAMQQYEMAIAYMGDDFMFQLFGKYRDMALAVKNPCHLNMAA 241
           A   K  GN  F++    +AM+ Y  AI     D                    + N AA
Sbjct: 16  ALMVKNKGNECFQKGDYPQAMKHYTEAIKRNPKDAKL-----------------YSNRAA 58

Query: 242 CLLKLKRYEEAIGQCSLVLGEDENNVKALFRRGKARAELGQTDAAREDFLKAGKFAPEDK 301
           C  KL  ++ A+  C   +  +   +K   R+  A   +     A + + KA       K
Sbjct: 59  CYTKLLEFQLALKDCEECIQLEPTFIKGYTRKAAALEAMKDYTKAMDVYQKALDLDSSCK 118

Query: 302 SIARELR 308
             A   +
Sbjct: 119 EAADGYQ 125

>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus} Length = 164

 Score = 85.9 bits (213), Expect = 2e-20
 Identities = 27/155 (17%), Positives = 52/155 (33%), Gaps = 18/155 (11%)

Query: 182 ADRRKMDGNALFKEEKLEEAMQQYEMAIAYMGDDFMFQLFGKYRDMALAVKNPCHLNMAA 241
           +D+ K +GNA    ++  +A+  Y  A++    + ++                   N AA
Sbjct: 11  SDKLKSEGNAAMARKEYSKAIDLYTQALSIAPANPIY-----------------LSNRAA 53

Query: 242 CLLKLKRYEEAIGQCSLVLGEDENNVKALFRRGKARAELGQTDAAREDFLKAGKFAPEDK 301
                 ++E+A     L    D    KA  R G AR ++     A+E + K  +      
Sbjct: 54  AYSASGQHEKAAEDAELATVVDPKYSKAWSRLGLARFDMADYKGAKEAYEKGIEAEGNGG 113

Query: 302 SIARELRLLAEHEKAVYKKQKEIYKGIFGPRPEPK 336
           S     R L   ++ + +  +              
Sbjct: 114 S-DAMKRGLETTKRKIEEANRGAEPPADDVDDAAG 147

>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A Length = 450

 Score = 89.0 bits (221), Expect = 1e-19
 Identities = 32/153 (20%), Positives = 57/153 (37%), Gaps = 17/153 (11%)

Query: 178 RIGAADRRKMDGNALFKEEKLEEAMQQYEMAIAYMGDDFMFQLFGKYRDMALAVKNPCHL 237
           ++   ++       L ++ +  +A  +YE  +        +                   
Sbjct: 253 QVKKLNKLIESAEELIRDGRYTDATSKYESVMKTEPSIAEY-------------TVRSKE 299

Query: 238 NMAACLLKLKRYEEAIGQCSLVLGEDENNVKALFRRGKARAELGQTDAAREDFLKAGKFA 297
            +  C  K ++  EAI  CS VL  + +NV AL  R +A       D A +D+  A +  
Sbjct: 300 RICHCFSKDEKPVEAIRVCSEVLQMEPDNVNALKDRAEAYLIEEMYDEAIQDYETAQEHN 359

Query: 298 PEDKSIAREL----RLLAEHEKAVYKKQKEIYK 326
             D+ I   L    RLL + +K  Y K   + +
Sbjct: 360 ENDQQIREGLEKAQRLLKQSQKRDYYKILGVKR 392

>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A Length = 450

 Score = 80.5 bits (199), Expect = 7e-17
 Identities = 29/138 (21%), Positives = 52/138 (37%), Gaps = 14/138 (10%)

Query: 189 GNALFKEEKLEEAMQQYEMAIAYMGDDFMFQLFGKYRDMAL-----AVK-NP----CHLN 238
           G  L  E    ++M   E  +  +G   +    G+  D AL     AV  +P     +  
Sbjct: 10  GVDLGTENLYFQSMADVEKHLE-LGKKLLAA--GQLAD-ALSQFHAAVDGDPDNYIAYYR 65

Query: 239 MAACLLKLKRYEEAIGQCSLVLGEDENNVKALFRRGKARAELGQTDAAREDFLKAGKFAP 298
            A   L + + + A+   + V+    +   A  +RG    + G+ D A +DF K  K  P
Sbjct: 66  RATVFLAMGKSKAALPDLTKVIQLKMDFTAARLQRGHLLLKQGKLDEAEDDFKKVLKSNP 125

Query: 299 EDKSIARELRLLAEHEKA 316
            +         L + ++ 
Sbjct: 126 SENEEKEAQSQLIKSDEM 143

>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A Length = 450

 Score = 69.7 bits (171), Expect = 2e-13
 Identities = 17/139 (12%), Positives = 38/139 (27%), Gaps = 17/139 (12%)

Query: 189 GNALFKEEKLEEAMQQYEMAIAYMGDDFMFQLFGKYRDMALAVKNPCHLNMAACLLKLKR 248
               F       A+   +  +     D                        A C +K   
Sbjct: 150 ALNAFGSGDYTAAIAFLDKILEVCVWDAEL-----------------RELRAECFIKEGE 192

Query: 249 YEEAIGQCSLVLGEDENNVKALFRRGKARAELGQTDAAREDFLKAGKFAPEDKSIARELR 308
             +AI           +N +A ++      +LG  + +  +  +  K   + K      +
Sbjct: 193 PRKAISDLKAASKLKNDNTEAFYKISTLYYQLGDHELSLSEVRECLKLDQDHKRCFAHYK 252

Query: 309 LLAEHEKAVYKKQKEIYKG 327
            + +  K +   ++ I  G
Sbjct: 253 QVKKLNKLIESAEELIRDG 271

>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A Length = 450

 Score = 66.2 bits (162), Expect = 3e-12
 Identities = 22/138 (15%), Positives = 48/138 (34%), Gaps = 8/138 (5%)

Query: 189 GNALFKEEKLEEAMQQYEMAIAYMGDDFMFQLFGKYRDMALAVKNPCHLNMAACLLKLKR 248
           G+ L K+ KL+EA   ++  +     +   +        +  ++     + A        
Sbjct: 101 GHLLLKQGKLDEAEDDFKKVLKSNPSENEEKEAQSQLIKSDEMQR--LRSQALNAFGSGD 158

Query: 249 YEEAIGQCSLVLGEDENNVKALFRRGKARAELGQTDAAREDFLKAGKFAPEDKS----IA 304
           Y  AI     +L     + +    R +   + G+   A  D   A K   ++      I+
Sbjct: 159 YTAAIAFLDKILEVCVWDAELRELRAECFIKEGEPRKAISDLKAASKLKNDNTEAFYKIS 218

Query: 305 RELRLLAEHEKAV--YKK 320
                L +HE ++   ++
Sbjct: 219 TLYYQLGDHELSLSEVRE 236

>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A Length = 450

 Score = 60.5 bits (147), Expect = 3e-10
 Identities = 18/146 (12%), Positives = 49/146 (33%), Gaps = 15/146 (10%)

Query: 189 GNALFKEEKLEEAMQQYEMAIAYMGDDFMFQLFGKYRDMALAVKNPCHLNMAACLLKLKR 248
               ++    E ++ +    +    D         +       K    +  A  L++  R
Sbjct: 218 STLYYQLGDHELSLSEVRECLKLDQDHKRC-----FAHYKQVKKLNKLIESAEELIRDGR 272

Query: 249 YEEAIGQCSLVLGEDENN----VKALFRRGKARAELGQTDAAREDFLKAGKFAPED---- 300
           Y +A  +   V+  + +     V++  R     ++  +   A     +  +  P++    
Sbjct: 273 YTDATSKYESVMKTEPSIAEYTVRSKERICHCFSKDEKPVEAIRVCSEVLQMEPDNVNAL 332

Query: 301 KSIARELRLLAEHEKAV--YKKQKEI 324
           K  A    +   +++A+  Y+  +E 
Sbjct: 333 KDRAEAYLIEEMYDEAIQDYETAQEH 358

>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2 Length = 281

 Score = 86.1 bits (213), Expect = 2e-19
 Identities = 36/145 (24%), Positives = 56/145 (38%), Gaps = 19/145 (13%)

Query: 181 AADRRKMDGNALFKEEKLEEAMQQYEMAIAYMGDDFMFQLFGKYRDMALAVKNPCHLNMA 240
           +A   K  GN LF   K  EA   Y  AI       ++                 + N A
Sbjct: 3   SAQELKEQGNRLFVGRKYPEAAACYGRAITRNPLVAVY-----------------YTNRA 45

Query: 241 ACLLKLKRYEEAIGQCSLVLGEDENNVKALFRRGKARAELGQTDAAREDFLKAGKFAPED 300
            C LK+++ E+A+  C   L  D  +VKA F  G+ + E+   D A  +  +A   A E 
Sbjct: 46  LCYLKMQQPEQALADCRRALELDGQSVKAHFFLGQCQLEMESYDEAIANLQRAYSLAKEQ 105

Query: 301 KSIAREL--RLLAEHEKAVYKKQKE 323
           +    +     L   +K  +   +E
Sbjct: 106 RLNFGDDIPSALRIAKKKRWNSIEE 130

>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus} Length = 359

 Score = 83.1 bits (206), Expect = 6e-18
 Identities = 28/143 (19%), Positives = 51/143 (35%), Gaps = 14/143 (9%)

Query: 178 RIGAADRRKMDGNALFKEEKLEEAMQQYEMAIAYMGDDFMFQLFGKYRDMALAVKNPCHL 237
           ++   ++       L ++ +  +A  +YE  +        +                   
Sbjct: 230 QVKKLNKLIESAEELIRDGRYTDATSKYESVMKTEPSVAEY-------------TVRSKE 276

Query: 238 NMAACLLKLKRYEEAIGQCSLVLGEDENNVKALFRRGKARAELGQTDAAREDFLKAGKFA 297
            +  C  K ++  EAI  CS VL  + +NV AL  R +A       D A +D+  A +  
Sbjct: 277 RICHCFSKDEKPVEAIRICSEVLQMEPDNVNALKDRAEAYLIEEMYDEAIQDYEAAQEHN 336

Query: 298 PEDKSIARELRLLAEHEKAVYKK 320
             D+ I   L   A+      +K
Sbjct: 337 ENDQQIREGLE-KAQRLLKQSQK 358

>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus} Length = 359

 Score = 76.5 bits (189), Expect = 9e-16
 Identities = 23/141 (16%), Positives = 52/141 (36%), Gaps = 17/141 (12%)

Query: 182 ADRRKMDGNALFKEEKLEEAMQQYEMAIAYMGDDFMFQLFGKYRDMALAVKNPCHLNMAA 241
            ++    G  L    +L +A+ Q+  A+    D+++                  +   A 
Sbjct: 3   VEKHLELGKKLLAAGQLADALSQFHAAVDGDPDNYI-----------------AYYRRAT 45

Query: 242 CLLKLKRYEEAIGQCSLVLGEDENNVKALFRRGKARAELGQTDAAREDFLKAGKFAPEDK 301
             L + + + A+   + V+    +   A  +RG    + G+ D A +DF K  K  P ++
Sbjct: 46  VFLAMGKSKAALPDLTKVIALKMDFTAARLQRGHLLLKQGKLDEAEDDFKKVLKSNPSEQ 105

Query: 302 SIARELRLLAEHEKAVYKKQK 322
                   L + ++    + +
Sbjct: 106 EEKEAESQLVKADEMQRLRSQ 126

>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus} Length = 359

 Score = 67.3 bits (165), Expect = 1e-12
 Identities = 15/131 (11%), Positives = 34/131 (25%), Gaps = 17/131 (12%)

Query: 189 GNALFKEEKLEEAMQQYEMAIAYMGDDFMFQLFGKYRDMALAVKNPCHLNMAACLLKLKR 248
               F       A+   +  +     D                        A C +K   
Sbjct: 127 ALDAFDGADYTAAITFLDKILEVCVWDAEL-----------------RELRAECFIKEGE 169

Query: 249 YEEAIGQCSLVLGEDENNVKALFRRGKARAELGQTDAAREDFLKAGKFAPEDKSIARELR 308
             +AI           +N +A ++      +LG  + +  +  +  K   + K      +
Sbjct: 170 PRKAISDLKAASKLKSDNTEAFYKISTLYYQLGDHELSLSEVRECLKLDQDHKRCFAHYK 229

Query: 309 LLAEHEKAVYK 319
            + +  K +  
Sbjct: 230 QVKKLNKLIES 240

>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus} Length = 359

 Score = 64.6 bits (158), Expect = 9e-12
 Identities = 23/138 (16%), Positives = 48/138 (34%), Gaps = 8/138 (5%)

Query: 189 GNALFKEEKLEEAMQQYEMAIAYMGDDFMFQLFGKYRDMALAVKNPCHLNMAACLLKLKR 248
           G+ L K+ KL+EA   ++  +     +   +       +  A +     + A        
Sbjct: 78  GHLLLKQGKLDEAEDDFKKVLKSNPSEQ--EEKEAESQLVKADEMQRLRSQALDAFDGAD 135

Query: 249 YEEAIGQCSLVLGEDENNVKALFRRGKARAELGQTDAAREDFLKAGKFAPEDK----SIA 304
           Y  AI     +L     + +    R +   + G+   A  D   A K   ++      I+
Sbjct: 136 YTAAITFLDKILEVCVWDAELRELRAECFIKEGEPRKAISDLKAASKLKSDNTEAFYKIS 195

Query: 305 RELRLLAEHEKAV--YKK 320
                L +HE ++   ++
Sbjct: 196 TLYYQLGDHELSLSEVRE 213

>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus} Length = 359

 Score = 47.7 bits (114), Expect = 3e-06
 Identities = 13/108 (12%), Positives = 38/108 (35%), Gaps = 18/108 (16%)

Query: 189 GNALFKEEKLEEAMQQYEMAIAYMGDDFMFQLFGKYRDMALAVKNPCHLNMAACLLKLKR 248
                KE +  +A+   + A     D+              A        ++    +L  
Sbjct: 161 AECFIKEGEPRKAISDLKAASKLKSDN------------TEA-----FYKISTLYYQLGD 203

Query: 249 YEEAIGQCSLVLGEDENNVKALFRRGKARAELGQTDAAREDFLKAGKF 296
           +E ++ +    L  D+++ +      + +      ++A E+ ++ G++
Sbjct: 204 HELSLSEVRECLKLDQDHKRCFAHYKQVKKLNKLIESA-EELIRDGRY 250

>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans} Length = 127

 Score = 75.8 bits (187), Expect = 5e-17
 Identities = 27/140 (19%), Positives = 49/140 (35%), Gaps = 25/140 (17%)

Query: 176 EERIGAADRRKMDGNALFKEEKLEEAMQQYEMAIAYMGDDFMFQLFGKYRDMALAVKNPC 235
                AA   K  GNA +K++  E+A   Y+ AI     +  F                 
Sbjct: 2   NAMTDAAIAEKDLGNAAYKQKDFEKAHVHYDKAIELDPSNITF----------------- 44

Query: 236 HLNMAACLLKLKRYEEAIGQCSLVLGEDENN-------VKALFRRGKARAELGQTDAARE 288
           + N AA   + K++ E +  C   +              KA+ R G A  +      A +
Sbjct: 45  YNNKAAVYFEEKKFAECVQFCEKAVEVGRETRADYKLIAKAMSRAGNAFQKQNDLSLAVQ 104

Query: 289 DFLKAGKFAPEDKSIARELR 308
            F ++      D  + ++++
Sbjct: 105 WFHRSLSEFR-DPELVKKVK 123

>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A Length = 131

 Score = 75.8 bits (187), Expect = 5e-17
 Identities = 22/148 (14%), Positives = 49/148 (33%), Gaps = 28/148 (18%)

Query: 182 ADRRKMDGNALFKEEKLEEAMQQYEMAIAYMGDDFMFQLFGKYRDMALAVKNPCHLNMAA 241
           A + K  GN  +K++  + A++ Y+ A      +  +                   N AA
Sbjct: 4   ALKEKELGNDAYKKKDFDTALKHYDKAKELDPTNMTY-----------------ITNQAA 46

Query: 242 CLLKLKRYEEAIGQCSLVLGEDENN-------VKALFRRGKARAELGQTDAAREDFLKAG 294
              +   Y +    C   +     N        KA  R G +  +  +   A   + K+ 
Sbjct: 47  VYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKAYARIGNSYFKEEKYKDAIHFYNKSL 106

Query: 295 KFAPEDKSIARELRLLAEHEKAVYKKQK 322
                   + ++ +     EK + ++++
Sbjct: 107 AEHR-TPDVLKKCQQA---EKILKEQER 130

>3b7x_A FK506-binding protein 6; isomerase, repeat, rotamase, TPR repeat, williams-beuren syndrome, structural genomics consortium, SGC; 2.10A {Homo sapiens} Length = 134

 Score = 74.2 bits (183), Expect = 2e-16
 Identities = 29/108 (26%), Positives = 51/108 (47%), Gaps = 3/108 (2%)

Query: 54  VTKQIIKEGHGQKPSKYSTCFLHYRAWAESTRHKFDDTWLEQQPLEMVLGKEKKEMTGLA 113
           V K +I+EG G   +  ++  + Y  + E     FD  +  + P  M LG++   + G+ 
Sbjct: 28  VLKDVIREGAGDLVAPDASVLVKYSGYLEHMDRPFDSNYFRKTPRLMKLGEDIT-LWGME 86

Query: 114 IGVSSMKAGEHALLHVGWELGYGKEGSFSFPNVSPMADLVYEVVLIGF 161
           +G+ SM+ GE A         YG  G    P + P   +++E+ L+ F
Sbjct: 87  LGLLSMRRGELARFLFKPNYAYGTLG--CPPLIPPNTTVLFEIELLDF 132

>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae} Length = 258

 Score = 76.4 bits (189), Expect = 3e-16
 Identities = 27/138 (19%), Positives = 48/138 (34%), Gaps = 25/138 (18%)

Query: 189 GNALFKEEKLEEAMQQYEMAIAYMGDDFMFQLFGKYRDMALAVKNPCHLNMAACLLKLKR 248
           G   F +     A++ Y   I    +D            A       + N AA L KL  
Sbjct: 146 GKEYFTKSDWPNAVKAYTEMIKRAPED------------ARG-----YSNRAAALAKLMS 188

Query: 249 YEEAIGQCSLVLGEDENNVKALFRRGKARAELGQTDAAREDFLKAGKFAPEDKSIARELR 308
           + EAI  C+  + +D N V+A  R+  A+  + +  +A E    A     E  +      
Sbjct: 189 FPEAIADCNKAIEKDPNFVRAYIRKATAQIAVKEYASALETLDAARTKDAEVNN------ 242

Query: 309 LLAEHEKAVYKKQKEIYK 326
                 + + +   +  +
Sbjct: 243 --GSSAREIDQLYYKASQ 258

>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae} Length = 258

 Score = 72.2 bits (178), Expect = 9e-15
 Identities = 28/140 (20%), Positives = 48/140 (34%), Gaps = 21/140 (15%)

Query: 189 GNALFKEEKLEEAMQQYEMAIAYMGDDFMFQLFGKYRDMALAVKNPCHLNMAACLLKLKR 248
           GN  +K  + +EA++ Y  A               ++D+          N AA   +   
Sbjct: 12  GNKFYKARQFDEAIEHYNKAWEL------------HKDITY------LNNRAAAEYEKGE 53

Query: 249 YEEAIGQCSLVLGEDENNVKALFRRGKARAELGQTDAAREDFLKAGKFAPEDKSI---AR 305
           YE AI   +  + +            K+ A +G       D  K  ++  +  +    A 
Sbjct: 54  YETAISTLNDAVEQGREMRADYKVISKSFARIGNAYHKLGDLKKTIEYYQKSLTEHRTAD 113

Query: 306 ELRLLAEHEKAVYKKQKEIY 325
            L  L   EK + K + E Y
Sbjct: 114 ILTKLRNAEKELKKAEAEAY 133

>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae} Length = 258

 Score = 59.5 bits (145), Expect = 2e-10
 Identities = 21/128 (16%), Positives = 38/128 (29%), Gaps = 16/128 (12%)

Query: 189 GNALFKEEKLEEAMQQYEMAI--------AYMGDDFMFQLFGKYR------DMALAV--K 232
             A +++ + E A+     A+         Y      F   G            +    K
Sbjct: 45  AAAEYEKGEYETAISTLNDAVEQGREMRADYKVISKSFARIGNAYHKLGDLKKTIEYYQK 104

Query: 233 NPCHLNMAACLLKLKRYEEAIGQCSLVLGEDENNVKALFRRGKARAELGQTDAAREDFLK 292
           +      A  L KL+  E+ + +       +    +     GK          A + + +
Sbjct: 105 SLTEHRTADILTKLRNAEKELKKAEAEAYVNPEKAEEARLEGKEYFTKSDWPNAVKAYTE 164

Query: 293 AGKFAPED 300
             K APED
Sbjct: 165 MIKRAPED 172

>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae} Length = 258

 Score = 54.9 bits (133), Expect = 9e-09
 Identities = 19/157 (12%), Positives = 37/157 (23%), Gaps = 28/157 (17%)

Query: 189 GNALFKEEKLEEAMQQYEMAIAYMGDDFM-------FQLFGKY------RDMALAVKNP- 234
             +  +       +   +  I Y                           +    V NP 
Sbjct: 79  SKSFARIGNAYHKLGDLKKTIEYYQKSLTEHRTADILTKLRNAEKELKKAEAEAYV-NPE 137

Query: 235 ---CHLNMAACLLKLKRYEEAIGQCSLVLGEDENNVKALFRRGKARAELGQTDAAREDFL 291
                            +  A+   + ++     + +    R  A A+L     A  D  
Sbjct: 138 KAEEARLEGKEYFTKSDWPNAVKAYTEMIKRAPEDARGYSNRAAALAKLMSFPEAIADCN 197

Query: 292 KAGKFAPED------KSIARELRLLAEHEKAV--YKK 320
           KA +  P        K+ A     + E+  A+     
Sbjct: 198 KAIEKDPNFVRAYIRKATA--QIAVKEYASALETLDA 232

>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae} Length = 258

 Score = 46.0 bits (110), Expect = 6e-06
 Identities = 19/96 (19%), Positives = 33/96 (34%), Gaps = 7/96 (7%)

Query: 236 HLNMAACLLKLKRYEEAIGQCSLVLGEDENNVKALFRRGKARAELGQTDAAREDFLKAGK 295
                    K ++++EAI   +    E   ++  L  R  A  E G+ + A      A +
Sbjct: 8   EKAEGNKFYKARQFDEAIEHYNKAW-ELHKDITYLNNRAAAEYEKGEYETAISTLNDAVE 66

Query: 296 FAPED----KSIARELRLLAEHEKAV--YKKQKEIY 325
              E     K I++    +      +   KK  E Y
Sbjct: 67  QGREMRADYKVISKSFARIGNAYHKLGDLKKTIEYY 102

>1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3 Length = 477

 Score = 76.6 bits (189), Expect = 1e-15
 Identities = 33/143 (23%), Positives = 55/143 (38%), Gaps = 20/143 (13%)

Query: 181 AADRRKMDGNALFKEEKLEEAMQQYEMAIAYMGDDFMFQLFGKYRDMALAVKNPCHLNMA 240
            A+  K   N  FK +  E A++ Y  AI     + ++                 + N +
Sbjct: 5   RAEELKTQANDYFKAKDYENAIKFYSQAIELNPSNAIY-----------------YGNRS 47

Query: 241 ACLLKLKRYEEAIGQCSLVLGEDENNVKALFRRGKARAELGQTDAAREDFLKAGKFAPED 300
              L+ + Y  A+G  +  +  D+  +K  +RR  +   LG+  AA  D+    K  P D
Sbjct: 48  LAYLRTECYGYALGDATRAIELDKKYIKGYYRRAASNMALGKFRAALRDYETVVKVKPHD 107

Query: 301 KSIARELRLLAEHEKAVYKKQKE 323
           K    +     E  K V +K  E
Sbjct: 108 KDAKMK---YQECNKIVKQKAFE 127

>2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae} Length = 111

 Score = 71.2 bits (175), Expect = 1e-15
 Identities = 24/125 (19%), Positives = 36/125 (28%), Gaps = 18/125 (14%)

Query: 182 ADRRKMDGNALFKEEKLEEAMQQYEMAIAYMGDDFMFQLFGKYRDMALAVKNPCHLNMAA 241
            +++K  GN+LFK+    EA+  Y+  I     + +                  + N A 
Sbjct: 4   FEKQKEQGNSLFKQGLYREAVHCYDQLITAQPQNPVG-----------------YSNKAM 46

Query: 242 CLLKLKRYEEAIGQCSLVLGEDENNVKALFRRGKARAELGQTDAAREDFLKAGKFAPEDK 301
            L+KL  Y +AI  C   L           R       L     A            E  
Sbjct: 47  ALIKLGEYTQAIQMCQQGLRYTSTAEHVAIRSKLQYR-LELAQGAVGSVQIPVVEVDELP 105

Query: 302 SIARE 306
                
Sbjct: 106 EGYDR 110

>2jwx_A FKBP38NTD, FK506-binding protein 8 variant; apoptosis, beta barrel, central helix, with flexible N-terminal extension, isomerase; NMR {Homo sapiens} Length = 157

 Score = 70.6 bits (173), Expect = 7e-15
 Identities = 36/161 (22%), Positives = 59/161 (36%), Gaps = 16/161 (9%)

Query: 11  QAPGEVGESEIVTEDAAFVRGEPPQDGDGPPKVDSEVEVLHEK-VTKQIIKEGHG--QKP 67
           Q P E  E+E     A         +    P  +  +++L    + K+ +  G     +P
Sbjct: 3   QPPAE--EAEQPGALAREFLAAMEPEPAPAPAPEEWLDILGNGLLRKKTLVPGPPGSSRP 60

Query: 68  SKYSTCFLHYRAWAESTRHKFDDTWLEQQPLEMVLGKEK--KEMTGLAIGVSSMKAGEHA 125
            K     +H +   E    +      E+  L   LG     +    L + V  M  GE A
Sbjct: 61  VKGQVVTVHLQTSLE-NGTRVQ----EEPELVFTLGDCDVIQ---ALDLSVPLMDVGETA 112

Query: 126 LLHVGWELGYGKEGSFSFPNVSPMADLVYEVVLIGFDETKE 166
           ++    +  YG +GS S P + P A L  EV L    + + 
Sbjct: 113 MVTADSKYCYGPQGSRS-PYIPPHAALCLEVTLKTAVDLEH 152

>2d9f_A FK506-binding protein 8 variant; FKBP, rapamycin, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 135

 Score = 69.7 bits (171), Expect = 8e-15
 Identities = 28/115 (24%), Positives = 45/115 (39%), Gaps = 9/115 (7%)

Query: 54  VTKQIIKEGHG--QKPSKYSTCFLHYRAWAESTRHKFDDTWLEQQPLEMVLGKEKKEMTG 111
           + K+ +  G     +P K     +H +   E    +      E+  L   LG     +  
Sbjct: 19  LRKKTLVPGPPGSSRPVKGQVVTVHLQTSLE-NGTRVQ----EEPELVFTLGDCDV-IQA 72

Query: 112 LAIGVSSMKAGEHALLHVGWELGYGKEGSFSFPNVSPMADLVYEVVLIGFDETKE 166
           L + V  M  GE A++    +  YG +GS S P + P A L  EV L    +  +
Sbjct: 73  LDLSVPLMDVGETAMVTADSKYCYGPQGSRS-PYIPPHAALCLEVTLKTAVDRPD 126

>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A Length = 142

 Score = 69.0 bits (169), Expect = 1e-14
 Identities = 25/135 (18%), Positives = 42/135 (31%), Gaps = 18/135 (13%)

Query: 189 GNALFKEEKLEEAMQQYEMAIAYMGDDFMFQLFGKYRDMALAVKNPCHLNMAACLLKLKR 248
           G   ++  K ++A + ++        D  +                  L + AC   L  
Sbjct: 25  GFNQYQAGKWDDAQKIFQALCMLDHYDARY-----------------FLGLGACRQSLGL 67

Query: 249 YEEAIGQCSLVLGEDENNVKALFRRGKARAELGQTDAAREDFLKAGKFAPEDKSIARELR 308
           YE+A+   S     D N  +  F   +   +LG  D A   F  A   A    +    L 
Sbjct: 68  YEQALQSYSYGALMDINEPRFPFHAAECHLQLGDLDGAESGFYSARALAAAQPA-HEALA 126

Query: 309 LLAEHEKAVYKKQKE 323
             A         +K+
Sbjct: 127 ARAGAMLEAVTARKD 141

>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A Length = 142

 Score = 45.5 bits (108), Expect = 3e-06
 Identities = 10/84 (11%), Positives = 25/84 (29%), Gaps = 4/84 (4%)

Query: 238 NMAACLLKLKRYEEAIGQCSLVLGEDENNVKALFRRGKARAELGQTDAAREDFLKAGKFA 297
            +     +  ++++A      +   D  + +     G  R  LG  + A + +       
Sbjct: 23  ALGFNQYQAGKWDDAQKIFQALCMLDHYDARYFLGLGACRQSLGLYEQALQSYSYGALMD 82

Query: 298 PEDKS----IARELRLLAEHEKAV 317
             +       A     L + + A 
Sbjct: 83  INEPRFPFHAAECHLQLGDLDGAE 106

>3jxv_A 70 kDa peptidyl-prolyl isomerase; FKBP- binding domain five-stranded anti-parallel beta-sheet alpha-helix crossing THis sheet; 2.08A {Triticum aestivum} PDB: 3jym_A Length = 356

 Score = 72.2 bits (177), Expect = 3e-14
 Identities = 36/146 (24%), Positives = 63/146 (43%), Gaps = 5/146 (3%)

Query: 42  KVDSEVEVLHEKVTKQIIKEGHG-QKPSKYSTCFLHYRAWAESTRHKFDDTWLEQQPLEM 100
           KV  E E+  + + K+++KEG G   P       +HY       + KFD +       + 
Sbjct: 1   KVGEENEIGKQGLKKKLLKEGEGWDTPEVGDEVEVHYTGTLLDGK-KFDSSRDRDDTFKF 59

Query: 101 VLGKEKKEMTGLAIGVSSMKAGEHALLHVGWELGYGKEGSFSFPNVSPMADLVYEVVLIG 160
            LG+ +  + G   G+ +MK GE+AL  +  EL YG+ G  S P +   A L ++V L+ 
Sbjct: 60  KLGQGQV-IKGWDQGIKTMKKGENALFTIPPELAYGESG--SPPTIPANATLQFDVELLS 116

Query: 161 FDETKEGKARSDMTVEERIGAADRRK 186
           +   ++      +  +          
Sbjct: 117 WTSVRDIAKDGGIFKKILKEGDKWEN 142

>3jxv_A 70 kDa peptidyl-prolyl isomerase; FKBP- binding domain five-stranded anti-parallel beta-sheet alpha-helix crossing THis sheet; 2.08A {Triticum aestivum} PDB: 3jym_A Length = 356

 Score = 69.5 bits (170), Expect = 2e-13
 Identities = 35/165 (21%), Positives = 63/165 (38%), Gaps = 19/165 (11%)

Query: 16  VGESEIVT---EDAAFVRGEPPQDGDG--PP--KVDSEVEVLHEKVTKQ----------- 57
            GE  ++    +      G P     G  PP   +  ++E++  K   +           
Sbjct: 191 KGEKVLLAVKPQYGFGEMGRPAAGEGGAVPPNASLVIDLELVSWKTVTEIGDDKKILKKV 250

Query: 58  IIKEGHGQKPSKYSTCFLHYRAWAESTRHKFDDTWLEQQPLEMVLGKEKKEMTGLAIGVS 117
           + +    ++P++ +   +      +           EQ+P E    +E   + GL   V 
Sbjct: 251 LKEXEGYERPNEGAVVTVKITGKLQDGTVFLKKGHDEQEPFEFKTDEEAV-IEGLDRAVL 309

Query: 118 SMKAGEHALLHVGWELGYGKEGSFSFPNVSPMADLVYEVVLIGFD 162
           +MK GE AL+ +  E  YG   S     V P + ++YEV L+ F 
Sbjct: 310 NMKKGEVALVTIPPEYAYGSTESKQDAIVPPNSTVIYEVELVSFV 354

>3jxv_A 70 kDa peptidyl-prolyl isomerase; FKBP- binding domain five-stranded anti-parallel beta-sheet alpha-helix crossing THis sheet; 2.08A {Triticum aestivum} PDB: 3jym_A Length = 356

 Score = 52.1 bits (125), Expect = 1e-07
 Identities = 26/117 (22%), Positives = 43/117 (36%), Gaps = 9/117 (7%)

Query: 51  HEKVTKQIIKEGHGQKPSKYSTCFLHYRAWAESTRHKFDDTWLEQQPLEMVLGKEKKEMT 110
                K + +    + P      F+ Y A  E        +    + +E  +        
Sbjct: 127 GGIFKKILKEGDKWENPKDPDEVFVKYEARLEDGT-VVSKS----EGVEFTVKDGHL-CP 180

Query: 111 GLAIGVSSMKAGEHALLHVGWELGYGKEGSFSF---PNVSPMADLVYEVVLIGFDET 164
            LA  V +MK GE  LL V  + G+G+ G  +      V P A LV ++ L+ +   
Sbjct: 181 ALAKAVKTMKKGEKVLLAVKPQYGFGEMGRPAAGEGGAVPPNASLVIDLELVSWKTV 237

>2awg_A 38 kDa FK-506 binding protein; FKBP-type, ppiase, BCL-2 inhibitor, SHH signalling antagonist, structural genomics consortium, SGC; 1.60A {Homo sapiens} PDB: 2f2d_A 3ey6_A Length = 118

 Score = 67.3 bits (165), Expect = 4e-14
 Identities = 26/114 (22%), Positives = 43/114 (37%), Gaps = 14/114 (12%)

Query: 54  VTKQIIKEGHG--QKPSKYSTCFLHYRAWAESTRHKFDDTWLEQQPLEMVLGKEK--KEM 109
           + K+ +  G     +P K     +H +   E+   +      E+  L   LG     +  
Sbjct: 15  LRKKTLVPGPPGSSRPVKGQVVTVHLQTSLENGT-RVQ----EEPELVFTLGDCDVIQ-- 67

Query: 110 TGLAIGVSSMKAGEHALLHVGWELGYGKEGSFSFPNVSPMADLVYEVVLIGFDE 163
             L + V  M  GE A++    +  YG +G    P + P A L  EV L    +
Sbjct: 68  -ALDLSVPLMDVGETAMVTADSKYCYGPQG--RSPYIPPHAALCLEVTLKTAVD 118

>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A Length = 537

 Score = 71.7 bits (176), Expect = 7e-14
 Identities = 34/164 (20%), Positives = 55/164 (33%), Gaps = 20/164 (12%)

Query: 189 GNALFKEEKLEEAMQQYEMAIAYMGDDFMFQLFGKYRDMALAVKNPCHLNMAACLLKLKR 248
           GN  F  +   EA++ Y+ AI    ++ +F                 + N++AC +    
Sbjct: 32  GNHFFTAKNFNEAIKYYQYAIELDPNEPVF-----------------YSNISACYISTGD 74

Query: 249 YEEAIGQCSLVLGEDENNVKALFRRGKARAELGQTDAAREDFLKA---GKFAPEDKSIAR 305
            E+ I   +  L    ++ KAL RR  A   LG    A  D       G F         
Sbjct: 75  LEKVIEFTTKALEIKPDHSKALLRRASANESLGNFTDAMFDLSVLSLNGDFDGASIEPML 134

Query: 306 ELRLLAEHEKAVYKKQKEIYKGIFGPRPEPKQKKNWLIIFWQLL 349
           E  L  +  K + +   +         P      ++  IF   L
Sbjct: 135 ERNLNKQAMKVLNENLSKDEGRGSQVLPSNTSLASFFGIFDSHL 178

>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A Length = 537

 Score = 65.5 bits (160), Expect = 7e-12
 Identities = 20/131 (15%), Positives = 44/131 (33%), Gaps = 3/131 (2%)

Query: 189 GNALFKEEKLEEAMQQYEMAIAYMGDDFMFQLFGKYRDMALAVKNPCHLNMAACLLKLKR 248
              L      + A++QY++A   + +       G    +  A       +     L  ++
Sbjct: 385 AEILTDRGDFDTAIKQYDIAKR-LEEVQEKIHVGIGPLIGKATILARQSSQDPTQLDEEK 443

Query: 249 YEEAIGQCSLVLGEDENNVKALFRRGKARAELGQTDAAREDFLKAGKFAPEDKSI--ARE 306
           +  AI   +     D  + +A     + + ++ + D A E F  +   A        A  
Sbjct: 444 FNAAIKLLTKACELDPRSEQAKIGLAQLKLQMEKIDEAIELFEDSAILARTMDEKLQATT 503

Query: 307 LRLLAEHEKAV 317
               A+ +K +
Sbjct: 504 FAEAAKIQKRL 514

>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A Length = 537

 Score = 64.0 bits (156), Expect = 2e-11
 Identities = 23/142 (16%), Positives = 44/142 (30%), Gaps = 24/142 (16%)

Query: 189 GNALFKEEKLEEAMQQYEMAIAYMGDDFMFQLFGKYRDMALAVKNPCHLNMAACLLKLKR 248
           G   F +  L +A    + +I                   L      ++ +A  L   + 
Sbjct: 250 GIFHFLKNNLLDAQVLLQESIN------------------LHPTPNSYIFLALTLADKEN 291

Query: 249 YEEAIGQCSLVLGEDENNVKALFRRGKARAELGQTDAAREDFLKAGKFAPED----KSIA 304
            +E        +  +       + RG+    L     A+EDF KA    PE+      +A
Sbjct: 292 SQEFFKFFQKAVDLNPEYPPTYYHRGQMYFILQDYKNAKEDFQKAQSLNPENVYPYIQLA 351

Query: 305 RELRLLAEHEKAV--YKKQKEI 324
             L    +  ++   + + K  
Sbjct: 352 CLLYKQGKFTESEAFFNETKLK 373

>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A Length = 537

 Score = 62.0 bits (151), Expect = 1e-10
 Identities = 13/115 (11%), Positives = 35/115 (30%), Gaps = 17/115 (14%)

Query: 189 GNALFKEEKLEEAMQQYEMAIAYMGDDFMFQLFGKYRDMALAVKNPCHLNMAACLLKLKR 248
           G   F  +  + A + ++ A +               +         ++ +A  L K  +
Sbjct: 317 GQMYFILQDYKNAKEDFQKAQSL------------NPENVYP-----YIQLACLLYKQGK 359

Query: 249 YEEAIGQCSLVLGEDENNVKALFRRGKARAELGQTDAAREDFLKAGKFAPEDKSI 303
           + E+    +    +     +      +   + G  D A + +  A +     + I
Sbjct: 360 FTESEAFFNETKLKFPTLPEVPTFFAEILTDRGDFDTAIKQYDIAKRLEEVQEKI 414

>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A Length = 537

 Score = 51.3 bits (123), Expect = 3e-07
 Identities = 16/144 (11%), Positives = 36/144 (25%), Gaps = 12/144 (8%)

Query: 189 GNALFKEEKLEEAMQQYEMAIAYMGDDFMFQLFGKYRDMALAVKN-------PCHLNMAA 241
              L     L      ++  +     +        Y  ++ A++           +    
Sbjct: 158 SQVLPSNTSLASFFGIFDSHLEVSSVNTSSNYDTAYALLSDALQRLYSATDEGYLVANDL 217

Query: 242 CLLKLKRYEEAIGQCSLVLGEDENNVKALFRRGKARAELGQTDAAREDFLKAGKFAPEDK 301
                  Y   +   ++     EN   AL   G           A+    ++    P   
Sbjct: 218 LTKSTDMYHSLLSANTVDDPLRENAALALCYTGIFHFLKNNLLDAQVLLQESINLHPTPN 277

Query: 302 S---IARELRLLAEHEKAV--YKK 320
           S   +A  L      ++    ++K
Sbjct: 278 SYIFLALTLADKENSQEFFKFFQK 301

>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A Length = 537

 Score = 48.2 bits (115), Expect = 2e-06
 Identities = 15/86 (17%), Positives = 21/86 (24%), Gaps = 4/86 (4%)

Query: 236 HLNMAACLLKLKRYEEAIGQCSLVLGEDENNVKALFRRGKARAELGQTDAAREDFLKAGK 295
             N        K + EAI      +  D N               G  +   E   KA +
Sbjct: 28  LKNRGNHFFTAKNFNEAIKYYQYAIELDPNEPVFYSNISACYISTGDLEKVIEFTTKALE 87

Query: 296 FAPED----KSIARELRLLAEHEKAV 317
             P+        A     L     A+
Sbjct: 88  IKPDHSKALLRRASANESLGNFTDAM 113

>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A Length = 151

 Score = 66.4 bits (162), Expect = 2e-13
 Identities = 16/124 (12%), Positives = 43/124 (34%), Gaps = 17/124 (13%)

Query: 189 GNALFKEEKLEEAMQQYEMAIAYMGDDFMFQLFGKYRDMALAVKNPCHLNMAACLLKLKR 248
               + + ++EEA   +     Y   +  +                  + +AA     ++
Sbjct: 43  AYDFYNKGRIEEAEVFFRFLCIYDFYNVDY-----------------IMGLAAIYQIKEQ 85

Query: 249 YEEAIGQCSLVLGEDENNVKALFRRGKARAELGQTDAAREDFLKAGKFAPEDKSIARELR 308
           +++A    ++     +N+   +F  G+ +  L     A+E F    + + ++K   +   
Sbjct: 86  FQQAADLYAVAFALGKNDYTPVFHTGQCQLRLKAPLKAKECFELVIQHSNDEKLKIKAQS 145

Query: 309 LLAE 312
            L  
Sbjct: 146 YLDA 149

>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A Length = 151

 Score = 42.1 bits (99), Expect = 5e-05
 Identities = 15/84 (17%), Positives = 22/84 (26%), Gaps = 4/84 (4%)

Query: 238 NMAACLLKLKRYEEAIGQCSLVLGEDENNVKALFRRGKARAELGQTDAAREDFLKAGKFA 297
           + A       R EEA      +   D  NV  +           Q   A + +  A    
Sbjct: 41  SYAYDFYNKGRIEEAEVFFRFLCIYDFYNVDYIMGLAAIYQIKEQFQQAADLYAVAFALG 100

Query: 298 PEDKS----IARELRLLAEHEKAV 317
             D +      +    L    KA 
Sbjct: 101 KNDYTPVFHTGQCQLRLKAPLKAK 124

>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae} Length = 514

 Score = 70.2 bits (172), Expect = 2e-13
 Identities = 28/155 (18%), Positives = 51/155 (32%), Gaps = 26/155 (16%)

Query: 189 GNALFKEEKLEEAMQQYEMAIAYMGDDFMFQLFGKYRDMALAVKNP---CHLNMAACLLK 245
           GN  F+ +K ++A++ Y  A+                             + N++AC + 
Sbjct: 13  GNQFFRNKKYDDAIKYYNWALEL---------------------KEDPVFYSNLSACYVS 51

Query: 246 LKRYEEAIGQCSLVLGEDENNVKALFRRGKARAELGQTDAAREDFLKAG-KFAPEDKSIA 304
           +   ++ +   +  L    +  K L RR  A   LG+   A  D           D SI 
Sbjct: 52  VGDLKKVVEMSTKALELKPDYSKVLLRRASANEGLGKFADAMFDLSVLSLNGDFNDASIE 111

Query: 305 REL-RLLAEHEKAVYKKQKEIYKGIFGPRPEPKQK 338
             L R L +   +  K++            E   +
Sbjct: 112 PMLERNLNKQAMSKLKEKFGDIDTATATPTELSTQ 146

>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae} Length = 514

 Score = 67.5 bits (165), Expect = 1e-12
 Identities = 26/142 (18%), Positives = 43/142 (30%), Gaps = 24/142 (16%)

Query: 189 GNALFKEEKLEEAMQQYEMAIAYMGDDFMFQLFGKYRDMALAVKNPCHLNMAACLLKLKR 248
           G   F +     A +  + AI                   L  +   ++ MA  +     
Sbjct: 244 GIFKFLKNDPLGAHEDIKKAIE------------------LFPRVNSYIYMALIMADRND 285

Query: 249 YEEAIGQCSLVLGEDENNVKALFRRGKARAELGQTDAAREDFLKAGKFAPED----KSIA 304
             E        L  D NN    + RG+    L   D A +DF KA +  PE+      +A
Sbjct: 286 STEYYNYFDKALKLDSNNSSVYYHRGQMNFILQNYDQAGKDFDKAKELDPENIFPYIQLA 345

Query: 305 RELRLLAEHEKAV--YKKQKEI 324
                  + +     + + K  
Sbjct: 346 CLAYRENKFDDCETLFSEAKRK 367

>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae} Length = 514

 Score = 62.5 bits (152), Expect = 6e-11
 Identities = 9/112 (8%), Positives = 33/112 (29%), Gaps = 17/112 (15%)

Query: 189 GNALFKEEKLEEAMQQYEMAIAYMGDDFMFQLFGKYRDMALAVKNPCHLNMAACLLKLKR 248
           G   F  +  ++A + ++ A     ++                    ++ +A    +  +
Sbjct: 311 GQMNFILQNYDQAGKDFDKAKELDPENIF-----------------PYIQLACLAYRENK 353

Query: 249 YEEAIGQCSLVLGEDENNVKALFRRGKARAELGQTDAAREDFLKAGKFAPED 300
           +++     S    +     +      +   +    D A + +  A +   + 
Sbjct: 354 FDDCETLFSEAKRKFPEAPEVPNFFAEILTDKNDFDKALKQYDLAIELENKL 405

>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae} Length = 514

 Score = 62.5 bits (152), Expect = 7e-11
 Identities = 18/142 (12%), Positives = 38/142 (26%), Gaps = 23/142 (16%)

Query: 189 GNALFKEEKLEEAMQQYEMAIAYMGDDFMFQLFGKYRDMALAVKNPCHLNMAACLLKLKR 248
              +       E    ++ A+                + +       + +       L+ 
Sbjct: 277 ALIMADRNDSTEYYNYFDKALK------------LDSNNSSV-----YYHRGQMNFILQN 319

Query: 249 YEEAIGQCSLVLGEDENNVKALFRRGKARAELGQTDAAREDFLKAGKFAPED----KSIA 304
           Y++A          D  N+    +         + D     F +A +  PE        A
Sbjct: 320 YDQAGKDFDKAKELDPENIFPYIQLACLAYRENKFDDCETLFSEAKRKFPEAPEVPNFFA 379

Query: 305 RELRLLAEHEKAV--YKKQKEI 324
             L    + +KA+  Y    E+
Sbjct: 380 EILTDKNDFDKALKQYDLAIEL 401

>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae} Length = 514

 Score = 61.7 bits (150), Expect = 1e-10
 Identities = 19/142 (13%), Positives = 45/142 (31%), Gaps = 12/142 (8%)

Query: 189 GNALFKEEKLEEAMQQYEMAIAYMGDDFMFQLFGKYRDMALAVKNPCHLNMAACLLKLKR 248
              L  +   ++A++QY++AI              Y  +A  V       +      ++ 
Sbjct: 379 AEILTDKNDFDKALKQYDLAIELENKLDGI-----YVGIAPLVGK---ATLLTRNPTVEN 430

Query: 249 YEEAIGQCSLVLGEDENNVKALFRRGKARAELGQTDAAREDFLKAGKFAPEDKSI--ARE 306
           + EA          D  + +A     + + +    D A   F ++   A   +    A  
Sbjct: 431 FIEATNLLEKASKLDPRSEQAKIGLAQMKLQQEDIDEAITLFEESADLARTMEEKLQAIT 490

Query: 307 LRLLAEHEKAV--YKKQKEIYK 326
               A+ ++ +       +  +
Sbjct: 491 FAEAAKVQQRIRSDPVLAKKIQ 512

>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae} Length = 514

 Score = 47.0 bits (112), Expect = 6e-06
 Identities = 18/141 (12%), Positives = 37/141 (26%), Gaps = 8/141 (5%)

Query: 180 GAADRRKMDGNALFKEEKLEEAMQQYEMAIAYMGDDFMFQLFGKYRDMALAVKNPCHLNM 239
                      + F   K E     Y+ +     +     L     ++            
Sbjct: 155 QENLPSVTSMASFFGIFKPELTFANYDESNEADKE-----LMNGLSNLYKRSPESYDKAD 209

Query: 240 AACLLKLKRYEEAIGQCSLVLGEDENNVKALFRRGKARAELGQTDAAREDFLKAGKFAPE 299
            +     + +EE + + +      E    +L   G  +        A ED  KA +  P 
Sbjct: 210 ESFTKAARLFEEQLDKNNEDEKLKEKLAISLEHTGIFKFLKNDPLGAHEDIKKAIELFPR 269

Query: 300 DKS---IARELRLLAEHEKAV 317
             S   +A  +    +  +  
Sbjct: 270 VNSYIYMALIMADRNDSTEYY 290

>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae} Length = 514

 Score = 42.4 bits (100), Expect = 2e-04
 Identities = 11/58 (18%), Positives = 19/58 (32%), Gaps = 1/58 (1%)

Query: 236 HLNMAACLLKLKRYEEAIGQCSLVLGEDENNVKALFRRGKARAELGQTDAAREDFLKA 293
             +      + K+Y++AI   +  L   E+ V            +G      E   KA
Sbjct: 9   LKDKGNQFFRNKKYDDAIKYYNWALELKEDPV-FYSNLSACYVSVGDLKKVVEMSTKA 65

>2vn1_A 70 kDa peptidylprolyl isomerase; FKBP, FK506, TPR repeat; HET: FK5; 2.35A {Plasmodium falciparum} PDB: 2ofn_A 2ki3_A 3ihz_A* 3ni6_A 3pa7_A Length = 129

 Score = 65.0 bits (159), Expect = 3e-13
 Identities = 35/117 (29%), Positives = 55/117 (47%), Gaps = 10/117 (8%)

Query: 54  VTKQIIKEGH---GQKPSKYSTCFLHYRAWAESTRHKFDDTWLEQQPLEMVLGKEK--KE 108
           V K I+K+G       P K +   +HY    EST   FD ++    P +  L + +  K 
Sbjct: 18  VIKTILKKGDEGEENIPKKGNEVTVHYVGKLESTGKVFDSSFDRNVPFKFHLEQGEVIK- 76

Query: 109 MTGLAIGVSSMKAGEHALLHVGWELGYGKEGSFSFPNVSPMADLVYEVVLIGFDETK 165
             G  I VSSM+  E  L+ +    GYG EG     ++   + L++E+ L+ F E +
Sbjct: 77  --GWDICVSSMRKNEKCLVRIESMYGYGDEG--CGESIPGNSVLLFEIELLSFRELE 129

>3kz7_A FK506-binding protein 3; FKPB ppiase rapamycin, isomerase, nucleus, phosphoprotein, R isomerase-inhibitor complex; HET: RAP; 1.95A {Mus musculus} PDB: 1pbk_A* Length = 119

 Score = 63.1 bits (154), Expect = 1e-12
 Identities = 30/117 (25%), Positives = 44/117 (37%), Gaps = 9/117 (7%)

Query: 53  KVTKQIIKEGHG-QKPSKYSTCFLHYRAWAE------STRHKFDDTWLEQQPLEMVLGKE 105
           K TK I+K+G     P K       Y           +            +PL   +G  
Sbjct: 5   KYTKSILKKGDKTNFPKKGDVVHCWYTGTLPDGTVFDTNIQTSSKKKKNAKPLSFKVGVG 64

Query: 106 KKEMTGLAIGVSSMKAGEHALLHVGWELGYGKEGSFSFPNVSPMADLVYEVVLIGFD 162
           K  + G    + +M  GE A L +  E  YGK+G      + P   L++EV L+  D
Sbjct: 65  KV-IRGWDEALLTMSKGEKARLEIEPEWAYGKKG-QPDAKIPPNTKLIFEVELVDID 119

>3v6t_A DHAX3; tandem repeats, DNA specific binding protein, DNA binding DNA complex; HET: DNA; 1.85A {Xanthomonas} PDB: 3v6p_A 2kq5_A Length = 499

 Score = 67.1 bits (164), Expect = 2e-12
 Identities = 17/135 (12%), Positives = 29/135 (21%), Gaps = 19/135 (14%)

Query: 189 GNALFKEEKLEEAMQQYEMAI--------AYMGDDFMFQLFGKYR------DMALAVKNP 234
                  E ++  +     A         A   +    Q     +        A  +  P
Sbjct: 351 DGGKQALETVQRLLPVLCQAHGLTPEQVVAIASNGGGKQALETVQRLLPVLCQAHGL-TP 409

Query: 235 ----CHLNMAACLLKLKRYEEAIGQCSLVLGEDENNVKALFRRGKARAELGQTDAAREDF 290
                  +       L+  +  +       G     V A+   G  R  L    A     
Sbjct: 410 EQVVAIASHDGGKQALETVQRLLPVLCQAHGLTPQQVVAIASNGGGRPALESIVAQLSRP 469

Query: 291 LKAGKFAPEDKSIAR 305
             A      D  +A 
Sbjct: 470 DPALAALTNDHLVAL 484

>3v6t_A DHAX3; tandem repeats, DNA specific binding protein, DNA binding DNA complex; HET: DNA; 1.85A {Xanthomonas} PDB: 3v6p_A 2kq5_A Length = 499

 Score = 62.1 bits (151), Expect = 1e-10
 Identities = 17/160 (10%), Positives = 31/160 (19%), Gaps = 25/160 (15%)

Query: 189 GNALFKEEKLEEAMQQYEMAI--------AYMGDDFMFQLFGKYR------DMALAVKNP 234
           G      E ++  +     A         A    D   Q     +        A  +  P
Sbjct: 317 GGGKQALETVQRLLPVLCQAHGLTPQQVVAIASHDGGKQALETVQRLLPVLCQAHGL-TP 375

Query: 235 ----CHLNMAACLLKLKRYEEAIGQCSLVLGEDENNVKALFRRGKARAELGQTDAAREDF 290
                  +       L+  +  +       G     V A+      +  L          
Sbjct: 376 EQVVAIASNGGGKQALETVQRLLPVLCQAHGLTPEQVVAIASHDGGKQALETVQRLLPVL 435

Query: 291 LKAGKFAPED----KSIARELRLLAEHEKAV--YKKQKEI 324
            +A    P+      S       L      +         
Sbjct: 436 CQAHGLTPQQVVAIASNGGGRPALESIVAQLSRPDPALAA 475

>3v6t_A DHAX3; tandem repeats, DNA specific binding protein, DNA binding DNA complex; HET: DNA; 1.85A {Xanthomonas} PDB: 3v6p_A 2kq5_A Length = 499

 Score = 59.0 bits (143), Expect = 9e-10
 Identities = 17/156 (10%), Positives = 35/156 (22%), Gaps = 25/156 (16%)

Query: 189 GNALFKEEKLEEAMQQYEMAI--------AYMGDDFMFQLFGKYR------DMALAVKNP 234
                  E ++  +     A         A    D   Q     +        A  +  P
Sbjct: 113 DGGKQALETVQRLLPVLCQAHGLTPEQVVAIASHDGGKQALETVQALLPVLCQAHGL-TP 171

Query: 235 ----CHLNMAACLLKLKRYEEAIGQCSLVLGEDENNVKALFRRGKARAELGQTDAAREDF 290
                  +       L+  +  +       G     V A+   G  +  L          
Sbjct: 172 EQVVAIASNGGGKQALETVQRLLPVLCQAHGLTPQQVVAIASNGGGKQALETVQRLLPVL 231

Query: 291 LKAGKFAPED----KSIARELRLLAEHEKAV--YKK 320
            +A    P+      S     + L   ++ +    +
Sbjct: 232 CQAHGLTPQQVVAIASNGGGKQALETVQRLLPVLCQ 267

>3v6t_A DHAX3; tandem repeats, DNA specific binding protein, DNA binding DNA complex; HET: DNA; 1.85A {Xanthomonas} PDB: 3v6p_A 2kq5_A Length = 499

 Score = 58.6 bits (142), Expect = 1e-09
 Identities = 14/133 (10%), Positives = 31/133 (23%), Gaps = 21/133 (15%)

Query: 189 GNALFKEEKLEEAMQQYEMAIAYMGDDFMFQLFGKYRDMALAVKNPCHLNMAACLLKLKR 248
           G      E ++  +     A                    +A       + +     L+ 
Sbjct: 249 GGGKQALETVQRLLPVLCQAHGLTPQQ------------VVA-----IASNSGGKQALET 291

Query: 249 YEEAIGQCSLVLGEDENNVKALFRRGKARAELGQTDAAREDFLKAGKFAPED----KSIA 304
            +  +       G     V A+   G  +  L           +A    P+      S  
Sbjct: 292 VQRLLPVLCQAHGLTPQQVVAIASNGGGKQALETVQRLLPVLCQAHGLTPQQVVAIASHD 351

Query: 305 RELRLLAEHEKAV 317
              + L   ++ +
Sbjct: 352 GGKQALETVQRLL 364

>3v6t_A DHAX3; tandem repeats, DNA specific binding protein, DNA binding DNA complex; HET: DNA; 1.85A {Xanthomonas} PDB: 3v6p_A 2kq5_A Length = 499

 Score = 58.6 bits (142), Expect = 1e-09
 Identities = 16/151 (10%), Positives = 35/151 (23%), Gaps = 23/151 (15%)

Query: 189 GNALFKEEKLEEAMQQYEMAI--------AYMGDDFMFQLFGKYR------DMALAVKNP 234
                  E ++  +     A         A   +    Q     +        A  +  P
Sbjct: 147 DGGKQALETVQALLPVLCQAHGLTPEQVVAIASNGGGKQALETVQRLLPVLCQAHGL-TP 205

Query: 235 ----CHLNMAACLLKLKRYEEAIGQCSLVLGEDENNVKALFRRGKARAELGQTDAAREDF 290
                  +       L+  +  +       G     V A+   G  +  L          
Sbjct: 206 QQVVAIASNGGGKQALETVQRLLPVLCQAHGLTPQQVVAIASNGGGKQALETVQRLLPVL 265

Query: 291 LKAGKFAPED----KSIARELRLLAEHEKAV 317
            +A    P+      S +   + L   ++ +
Sbjct: 266 CQAHGLTPQQVVAIASNSGGKQALETVQRLL 296

>3v6t_A DHAX3; tandem repeats, DNA specific binding protein, DNA binding DNA complex; HET: DNA; 1.85A {Xanthomonas} PDB: 3v6p_A 2kq5_A Length = 499

 Score = 58.2 bits (141), Expect = 1e-09
 Identities = 13/133 (9%), Positives = 29/133 (21%), Gaps = 21/133 (15%)

Query: 189 GNALFKEEKLEEAMQQYEMAIAYMGDDFMFQLFGKYRDMALAVKNPCHLNMAACLLKLKR 248
           G      E ++  +     A                    +A       +       L+ 
Sbjct: 215 GGGKQALETVQRLLPVLCQAHGLTPQQ------------VVA-----IASNGGGKQALET 257

Query: 249 YEEAIGQCSLVLGEDENNVKALFRRGKARAELGQTDAAREDFLKAGKFAPED----KSIA 304
            +  +       G     V A+      +  L           +A    P+      S  
Sbjct: 258 VQRLLPVLCQAHGLTPQQVVAIASNSGGKQALETVQRLLPVLCQAHGLTPQQVVAIASNG 317

Query: 305 RELRLLAEHEKAV 317
              + L   ++ +
Sbjct: 318 GGKQALETVQRLL 330

>3v6t_A DHAX3; tandem repeats, DNA specific binding protein, DNA binding DNA complex; HET: DNA; 1.85A {Xanthomonas} PDB: 3v6p_A 2kq5_A Length = 499

 Score = 57.1 bits (138), Expect = 3e-09
 Identities = 15/130 (11%), Positives = 28/130 (21%), Gaps = 19/130 (14%)

Query: 189 GNALFKEEKLEEAMQQYEMAI--------AYMGDDFMFQLFGKYR------DMALAVKNP 234
                  E ++  +     A         A   +    Q     +        A  +  P
Sbjct: 283 SGGKQALETVQRLLPVLCQAHGLTPQQVVAIASNGGGKQALETVQRLLPVLCQAHGL-TP 341

Query: 235 ----CHLNMAACLLKLKRYEEAIGQCSLVLGEDENNVKALFRRGKARAELGQTDAAREDF 290
                  +       L+  +  +       G     V A+   G  +  L          
Sbjct: 342 QQVVAIASHDGGKQALETVQRLLPVLCQAHGLTPEQVVAIASNGGGKQALETVQRLLPVL 401

Query: 291 LKAGKFAPED 300
            +A    PE 
Sbjct: 402 CQAHGLTPEQ 411

>3v6t_A DHAX3; tandem repeats, DNA specific binding protein, DNA binding DNA complex; HET: DNA; 1.85A {Xanthomonas} PDB: 3v6p_A 2kq5_A Length = 499

 Score = 54.4 bits (131), Expect = 3e-08
 Identities = 13/137 (9%), Positives = 29/137 (21%), Gaps = 18/137 (13%)

Query: 189 GNALFKEEKLEEAMQQYEMAIAYMGDDFMFQLFGKYRDMALAVKNPCHLNMAACLLKLKR 248
                  E ++  +     A                    +A       +       L+ 
Sbjct: 79  DGGKQALETVQRLLPVLCQAHGLTPQQ------------VVA-----IASHDGGKQALET 121

Query: 249 YEEAIGQCSLVLGEDENNVKALFRRGKARAELGQTDAAREDFLKAGKFAPEDKSIARELR 308
            +  +       G     V A+      +  L    A      +A    PE   +A    
Sbjct: 122 VQRLLPVLCQAHGLTPEQVVAIASHDGGKQALETVQALLPVLCQAHGLTPEQ-VVAIASN 180

Query: 309 LLAEHEKAVYKKQKEIY 325
              +      ++   + 
Sbjct: 181 GGGKQALETVQRLLPVL 197

>3v6t_A DHAX3; tandem repeats, DNA specific binding protein, DNA binding DNA complex; HET: DNA; 1.85A {Xanthomonas} PDB: 3v6p_A 2kq5_A Length = 499

 Score = 50.1 bits (120), Expect = 6e-07
 Identities = 21/158 (13%), Positives = 37/158 (23%), Gaps = 23/158 (14%)

Query: 189 GNALFKEEKLEEAMQ----------QYEMAIAYMGDDFMFQLFGKYRDMALAVK----NP 234
             A   E  L  A +             + IA  G     +    +R+ AL        P
Sbjct: 11  SGARALEALLTVAGELRGPPLQLDTGQLLKIAKRGGVTAVEAVHAWRN-ALTGAPLNLTP 69

Query: 235 ----CHLNMAACLLKLKRYEEAIGQCSLVLGEDENNVKALFRRGKARAELGQTDAAREDF 290
                  +       L+  +  +       G     V A+      +  L          
Sbjct: 70  EQVVAIASHDGGKQALETVQRLLPVLCQAHGLTPQQVVAIASHDGGKQALETVQRLLPVL 129

Query: 291 LKAGKFAPED----KSIARELRLLAEHEKAVYKKQKEI 324
            +A    PE      S     + L   +  +    +  
Sbjct: 130 CQAHGLTPEQVVAIASHDGGKQALETVQALLPVLCQAH 167

>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A Length = 252

 Score = 65.4 bits (160), Expect = 2e-12
 Identities = 19/144 (13%), Positives = 45/144 (31%), Gaps = 23/144 (15%)

Query: 189 GNALFKEEKLEEAMQQYEMAIAYMGDDFMFQLFGKYRDMALAVKNPCHLNMAACLLKLKR 248
           G  L+++++ EEA Q+   A               Y + +         N+    L++K+
Sbjct: 112 GGFLYEQKRYEEAYQRLLEASQDTL----------YPERSRV-----FENLGLVSLQMKK 156

Query: 249 YEEAIGQCSLVLGEDENNVKALFRRGKARAELGQTDAAREDFLKAGKFAPEDK------- 301
             +A       L  + N             +  +   AR+ +    +   ++        
Sbjct: 157 PAQAKEYFEKSLRLNRNQPSVALEMADLLYKEREYVPARQYYDLFAQGGGQNARSLLLGI 216

Query: 302 SIARELRLLAEHEKAVYKKQKEIY 325
            +A+          +   + K +Y
Sbjct: 217 RLAKVFEDRDT-AASYGLQLKRLY 239

>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A Length = 252

 Score = 54.2 bits (131), Expect = 1e-08
 Identities = 19/111 (17%), Positives = 33/111 (29%), Gaps = 17/111 (15%)

Query: 189 GNALFKEEKLEEAMQQYEMAIAYMGDDFMFQLFGKYRDMALAVKNPCHLNMAACLLKLKR 248
           G    + +K  +A + +E ++               R+          L MA  L K + 
Sbjct: 148 GLVSLQMKKPAQAKEYFEKSLRLN------------RNQPSV-----ALEMADLLYKERE 190

Query: 249 YEEAIGQCSLVLGEDENNVKALFRRGKARAELGQTDAAREDFLKAGKFAPE 299
           Y  A     L       N ++L    +        D A    L+  +  P 
Sbjct: 191 YVPARQYYDLFAQGGGQNARSLLLGIRLAKVFEDRDTAASYGLQLKRLYPG 241

>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A Length = 252

 Score = 53.4 bits (129), Expect = 2e-08
 Identities = 24/126 (19%), Positives = 41/126 (32%), Gaps = 23/126 (18%)

Query: 189 GNALFKEEKLEEAMQQYEMAI--------AY--MGDDFMFQLFGKYRD------MALAVK 232
           G    +    E+A      A+        A+  +    +FQ   + +        ALA  
Sbjct: 44  GLGYLQRGNTEQAKVPLRKALEIDPSSADAHAALA--VVFQTEMEPKLADEEYRKALASD 101

Query: 233 --NP-CHLNMAACLLKLKRYEEAIGQCSLVLGE--DENNVKALFRRGKARAELGQTDAAR 287
             N     N    L + KRYEEA  +      +       +     G    ++ +   A+
Sbjct: 102 SRNARVLNNYGGFLYEQKRYEEAYQRLLEASQDTLYPERSRVFENLGLVSLQMKKPAQAK 161

Query: 288 EDFLKA 293
           E F K+
Sbjct: 162 EYFEKS 167

>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A Length = 252

 Score = 43.8 bits (104), Expect = 3e-05
 Identities = 10/65 (15%), Positives = 21/65 (32%)

Query: 236 HLNMAACLLKLKRYEEAIGQCSLVLGEDENNVKALFRRGKARAELGQTDAAREDFLKAGK 295
           ++ +    L+    E+A       L  D ++  A            +   A E++ KA  
Sbjct: 40  YIQLGLGYLQRGNTEQAKVPLRKALEIDPSSADAHAALAVVFQTEMEPKLADEEYRKALA 99

Query: 296 FAPED 300
               +
Sbjct: 100 SDSRN 104

>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis} Length = 112

 Score = 62.1 bits (152), Expect = 3e-12
 Identities = 21/115 (18%), Positives = 35/115 (30%), Gaps = 21/115 (18%)

Query: 189 GNALFKEEKLEEAMQQYEMAIAYMGDDFMFQLFGKYRDMALAVKNPCHLNMAACLLKLKR 248
           G   +      E++  +E AI    ++            +        L     L  L+R
Sbjct: 13  GVLQYDAGNYTESIDLFEKAIQLDPEE------------SKY-----WLMKGKALYNLER 55

Query: 249 YEEAIGQC---SLVLGEDENNVKALFRRGKARAELGQTDAAREDFLKAGKFAPED 300
           YEEA+  C    + + EDE N      +  A   +   +   E      K     
Sbjct: 56  YEEAV-DCYNYVINVIEDEYNKDVWAAKADALRYIEGKEVEAEIAEARAKLEHHH 109

>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis} Length = 112

 Score = 44.4 bits (106), Expect = 4e-06
 Identities = 15/99 (15%), Positives = 31/99 (31%), Gaps = 12/99 (12%)

Query: 236 HLNMAACLLKLKRYEEAIGQCSLVLGEDENNVKALFRRGKARAELGQTDAAREDFLKAGK 295
           +            Y E+I      +  D    K    +GKA   L + + A + +     
Sbjct: 9   YYLEGVLQYDAGNYTESIDLFEKAIQLDPEESKYWLMKGKALYNLERYEEAVDCYNYVIN 68

Query: 296 FAPED--------KSIARELRLLAEHEKAV--YKKQKEI 324
              ++        K+ A  LR +   E      + + ++
Sbjct: 69  VIEDEYNKDVWAAKADA--LRYIEGKEVEAEIAEARAKL 105

>2ppn_A FK506-binding protein 1A; high resolution protein structure, isomerase; 0.92A {Homo sapiens} SCOP: d.26.1.1 PDB: 1b6c_A 1a7x_A 1d7h_A 1d7i_A 1d7j_A* 1f40_A* 1fap_A* 1d6o_A* 1fkd_A* 1fkf_A* 1fkg_A* 1fkh_A* 1fki_A* 1fkj_A* 1fkr_A 1fks_A 1fkt_A 1j4h_A* 1j4i_A* 1j4r_A* ... Length = 107

 Score = 61.8 bits (151), Expect = 3e-12
 Identities = 33/110 (30%), Positives = 53/110 (48%), Gaps = 5/110 (4%)

Query: 54  VTKQIIKEGHG-QKPSKYSTCFLHYRAWAESTRHKFDDTWLEQQPLEMVLGKEKKEMTGL 112
           V  + I  G G   P +  TC +HY    E  + KFD +    +P + +LGK++  + G 
Sbjct: 2   VQVETISPGDGRTFPKRGQTCVVHYTGMLEDGK-KFDSSRDRNKPFKFMLGKQEV-IRGW 59

Query: 113 AIGVSSMKAGEHALLHVGWELGYGKEGSFSFPNVSPMADLVYEVVLIGFD 162
             GV+ M  G+ A L +  +  YG  G      + P A LV++V L+  +
Sbjct: 60  EEGVAQMSVGQRAKLTISPDYAYGATG--HPGIIPPHATLVFDVELLKLE 107

>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens} Length = 330

 Score = 65.8 bits (161), Expect = 3e-12
 Identities = 22/132 (16%), Positives = 42/132 (31%), Gaps = 12/132 (9%)

Query: 189 GNALFKEEKLEEAMQQYEMAIAYMGDDFMFQLFGKYRDMALAVKNPCHLNMAACLLKLKR 248
           G   F+  + + A + +  A+  +          K+         P   N+     KLK+
Sbjct: 200 GVVAFQNGEWKTAEKWFLDALEKIKAIGNEVTVDKW--------EPLLNNLGHVCRKLKK 251

Query: 249 YEEAIGQCSLVLGEDENNVKALFRRGKARAELGQTDAAREDFLKAGKFAPEDKS----IA 304
           Y EA+      L     N       G   + +G  + A + F  A     +D      + 
Sbjct: 252 YAEALDYHRQALVLIPQNASTYSAIGYIHSLMGNFENAVDYFHTALGLRRDDTFSVTMLG 311

Query: 305 RELRLLAEHEKA 316
             + +     +A
Sbjct: 312 HCIEMYIGDSEA 323

>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens} Length = 330

 Score = 59.6 bits (145), Expect = 4e-10
 Identities = 21/151 (13%), Positives = 44/151 (29%), Gaps = 32/151 (21%)

Query: 189 GNALFKEEKLEEAMQQYEMAIAYMGDDFMFQLFGKYRDMALAVKNPCHLNMAACLLKLKR 248
           G++   E + ++AM  Y  A   M            +   L       L +         
Sbjct: 132 GHSFAVESEHDQAMAAYFTAAQLM------------KGCHLP-----MLYIGLEYGLTNN 174

Query: 249 YEEAIGQCSLVLGEDENNVKALFRRGKARAELGQTDAAREDFLKAGKFAPEDKSIARE-- 306
            + A    S  L     +   +   G    + G+   A + FL A +      +      
Sbjct: 175 SKLAERFFSQALSIAPEDPFVMHEVGVVAFQNGEWKTAEKWFLDALEKIKAIGNEVTVDK 234

Query: 307 -----------LRLLAEHEKAV--YKKQKEI 324
                       R L ++ +A+  +++   +
Sbjct: 235 WEPLLNNLGHVCRKLKKYAEALDYHRQALVL 265

>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens} Length = 330

 Score = 48.1 bits (115), Expect = 2e-06
 Identities = 16/139 (11%), Positives = 38/139 (27%), Gaps = 24/139 (17%)

Query: 189 GNALFKEEKLEEAMQQYEMAIAYMGDDFMFQLFGKYRDMALAVKNPCHLNMAACLLKLKR 248
               +     +   +   + +         +    +          C       L++L +
Sbjct: 29  AERHYYNCDFKMCYKLTSVVM---------EKDPFHAS--------CLPVHIGTLVELNK 71

Query: 249 YEEAIGQCSLVLGEDENNVKALFRRGKARAELGQ-TDAAREDFLKAGKFAPED----KSI 303
             E       ++    +N  + F  G     +G   + AR    KA            + 
Sbjct: 72  ANELFYLSHKLVDLYPSNPVSWFAVGCYYLMVGHKNEHARRYLSKATTLEKTYGPAWIAY 131

Query: 304 ARELRLLAEHEKAV--YKK 320
                + +EH++A+  Y  
Sbjct: 132 GHSFAVESEHDQAMAAYFT 150

>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens} Length = 330

 Score = 42.3 bits (100), Expect = 1e-04
 Identities = 9/64 (14%), Positives = 21/64 (32%)

Query: 237 LNMAACLLKLKRYEEAIGQCSLVLGEDENNVKALFRRGKARAELGQTDAAREDFLKAGKF 296
           +++A        ++      S+V+ +D  +   L        EL + +       K    
Sbjct: 26  VSLAERHYYNCDFKMCYKLTSVVMEKDPFHASCLPVHIGTLVELNKANELFYLSHKLVDL 85

Query: 297 APED 300
            P +
Sbjct: 86  YPSN 89

>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens} Length = 330

 Score = 41.9 bits (99), Expect = 2e-04
 Identities = 13/82 (15%), Positives = 27/82 (32%), Gaps = 17/82 (20%)

Query: 189 GNALFKEEKLEEAMQQYEMAIAYMGDD--------FMFQLFGKYR------DMALAVK-- 232
           G+   K +K  EA+  +  A+  +  +        ++  L G +         AL ++  
Sbjct: 243 GHVCRKLKKYAEALDYHRQALVLIPQNASTYSAIGYIHSLMGNFENAVDYFHTALGLRRD 302

Query: 233 -NPCHLNMAACLLKLKRYEEAI 253
                  +  C+       EA 
Sbjct: 303 DTFSVTMLGHCIEMYIGDSEAY 324

>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens} Length = 330

 Score = 40.0 bits (94), Expect = 7e-04
 Identities = 19/143 (13%), Positives = 35/143 (24%), Gaps = 24/143 (16%)

Query: 189 GNALFKEEKLEEAMQQYEMAIAYMGDDFMFQLFGKYRDMALAVKNPCHLNMAACLLKL-K 247
              L +  K  E        +              Y    ++        +    L +  
Sbjct: 63  IGTLVELNKANELFYLSHKLVD------------LYPSNPVS-----WFAVGCYYLMVGH 105

Query: 248 RYEEAIGQCSLVLGEDENNVKALFRRGKARAELGQTDAAREDFLKAGKFAPEDKS----I 303
           + E A    S     ++    A    G + A   + D A   +  A +           I
Sbjct: 106 KNEHARRYLSKATTLEKTYGPAWIAYGHSFAVESEHDQAMAAYFTAAQLMKGCHLPMLYI 165

Query: 304 ARELRLLAEHEKAV--YKKQKEI 324
             E  L    + A   + +   I
Sbjct: 166 GLEYGLTNNSKLAERFFSQALSI 188

>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus} Length = 208

 Score = 64.0 bits (156), Expect = 3e-12
 Identities = 23/138 (16%), Positives = 47/138 (34%), Gaps = 1/138 (0%)

Query: 189 GNALFKEEKLEEAMQQYEMAIAYMGDDFMFQLFGKYRDMALAVKNPCHLNMAACLLKLKR 248
            +A  +  +  +A+  +   IA +  D     +    D    + +     +A    K + 
Sbjct: 11  VSAAIEAGQNGQAVSYFRQTIA-LNIDRTEMYYWTNVDKNSEISSKLATELALAYKKNRN 69

Query: 249 YEEAIGQCSLVLGEDENNVKALFRRGKARAELGQTDAAREDFLKAGKFAPEDKSIARELR 308
           Y++A      +L +  NNV  L    + +   GQ   A   + K  +   ++ +    L 
Sbjct: 70  YDKAYLFYKELLQKAPNNVDCLEACAEMQVCRGQEKDALRMYEKILQLEADNLAANIFLG 129

Query: 309 LLAEHEKAVYKKQKEIYK 326
                     KK+ E   
Sbjct: 130 NYYYLTAEQEKKKLETDY 147

>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus} Length = 208

 Score = 55.1 bits (133), Expect = 4e-09
 Identities = 20/157 (12%), Positives = 49/157 (31%), Gaps = 28/157 (17%)

Query: 189 GNALFKEEKLEEAMQQYEMAIAYMGDDF--------MFQLFGKYRDMALAV------KNP 234
             A  K    ++A   Y+  +    ++         M    G+ +D AL +         
Sbjct: 61  ALAYKKNRNYDKAYLFYKELLQKAPNNVDCLEACAEMQVCRGQEKD-ALRMYEKILQLEA 119

Query: 235 ----CHLNMA-ACLLKLKRYEEAIGQCSLVLGEDENNVKALFRRGKARAELGQTDAARED 289
                ++ +     L  ++ ++ +      L        A +R G ++    + + AR  
Sbjct: 120 DNLAANIFLGNYYYLTAEQEKKKLETDYKKLSSPTKMQYARYRDGLSKLFTTRYEKARNS 179

Query: 290 FLKAGKFAPEDKSIARELRLLAEHEKAVYKKQKEIYK 326
             K     P  +          +    + + +KE+ +
Sbjct: 180 LQKVILRFPSTE--------AQKTLDKILRIEKEVNR 208

>1q1c_A FK506-binding protein 4; rotamase, TPR repeat, nuclear protein, phosphorylation, isomerase; 1.90A {Homo sapiens} SCOP: d.26.1.1 d.26.1.1 PDB: 1n1a_A 1rot_A 1rou_A Length = 280

 Score = 65.3 bits (159), Expect = 4e-12
 Identities = 45/163 (27%), Positives = 61/163 (37%), Gaps = 12/163 (7%)

Query: 18  ESEIVTEDAAFVRGEPPQDGDGPPKVDSEVEVLHEKVTKQIIKEGHG-QKPSKYSTCFLH 76
           E    TE  A     P +  D  PK D         V K I +EG G + P      F+H
Sbjct: 24  EEMKATESGAQSAPLPMEGVDISPKQDE-------GVLKVIKREGTGTEMPMIGDRVFVH 76

Query: 77  YRAWAESTRHKFDDTWLEQQPLEMVLGKEKKEMTGLAIGVSSMKAGEHALLHVGWELGYG 136
           Y  W      KFD +   +      LGK +  +    I +++MK GE   +    E  YG
Sbjct: 77  YTGWLLDGT-KFDSSLDRKDKFSFDLGKGEV-IKAWDIAIATMKVGEVCHITCKPEYAYG 134

Query: 137 KEGSFSFPNVSPMADLVYEVVLIGFDETKEGKARSDMTVEERI 179
             G  S P + P A LV+EV L  F      +      +    
Sbjct: 135 SAG--SPPKIPPNATLVFEVELFEFKGEDLTEEEDGGIIRRIQ 175

>1q1c_A FK506-binding protein 4; rotamase, TPR repeat, nuclear protein, phosphorylation, isomerase; 1.90A {Homo sapiens} SCOP: d.26.1.1 d.26.1.1 PDB: 1n1a_A 1rot_A 1rou_A Length = 280

 Score = 61.4 bits (149), Expect = 7e-11
 Identities = 27/133 (20%), Positives = 52/133 (39%), Gaps = 18/133 (13%)

Query: 46  EVEVLH------------EKVTKQIIKEGHGQKPSKYSTCFLHYRAWAESTRHKFDDTWL 93
           EVE+                + +   +     KP++ +   +    + +     FD   L
Sbjct: 151 EVELFEFKGEDLTEEEDGGIIRRIQTRGEGYAKPNEGAIVEVALEGYYKDK--LFDQREL 208

Query: 94  EQQPLEMVLGKEKKEMTGLAIGVSSMKAGEHALLHVGWELGYGKEGSFSFPNVSPMADLV 153
                E+  G+      GL   +  M+ GEH+++++     +G  G      + P A+L 
Sbjct: 209 R---FEIGEGENLDLPYGLERAIQRMEKGEHSIVYLKPSYAFGSVGK-EKFQIPPNAELK 264

Query: 154 YEVVLIGFDETKE 166
           YE+ L  F++ KE
Sbjct: 265 YELHLKSFEKAKE 277

>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis} Length = 225

 Score = 63.8 bits (156), Expect = 5e-12
 Identities = 23/142 (16%), Positives = 43/142 (30%), Gaps = 22/142 (15%)

Query: 189 GNALFKE-EKLEEAMQQYEMAIAYMGDDFMFQLFGKYRDMALAVKNPCHLNMAACLLKLK 247
           G  L     +  E+M  ++ A+A             Y    +A     +LN   C  K  
Sbjct: 83  GWFLCGRLNRPAESMAYFDKALADPT----------YPTPYIA-----NLNKGICSAKQG 127

Query: 248 RYEEAIGQCSLVLGEDENNVKALFRRGKARAELGQTDAAREDFLKAGKFAPEDKSIA--- 304
           ++  A       L        A     + +   GQ   A   F K        ++     
Sbjct: 128 QFGLAEAYLKRSLAAQPQFPPAFKELARTKMLAGQLGDADYYFKKYQSRVEVLQADDLLL 187

Query: 305 --RELRLLAEHEKAVYKKQKEI 324
             +  + L   + A Y+ + ++
Sbjct: 188 GWKIAKALGNAQAA-YEYEAQL 208

>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis} Length = 225

 Score = 47.3 bits (113), Expect = 2e-06
 Identities = 20/138 (14%), Positives = 43/138 (31%), Gaps = 20/138 (14%)

Query: 176 EERIGAADRRKMDGNALFKEEKLEEAMQQYEMAIAYMGDD--------FMFQLFGKYR-- 225
           E+    ++ +        + +   +A    E A+     +         ++Q        
Sbjct: 2   EKANQVSNIKTQLAMEYMRGQDYRQATASIEDALKSDPKNELAWLVRAEIYQYLKVNDKA 61

Query: 226 ----DMALAVK--NP-CHLNMAACLL-KLKRYEEAIGQCSLVLGED--ENNVKALFRRGK 275
                 AL++K  +   + N    L  +L R  E++      L +        A   +G 
Sbjct: 62  QESFRQALSIKPDSAEINNNYGWFLCGRLNRPAESMAYFDKALADPTYPTPYIANLNKGI 121

Query: 276 ARAELGQTDAAREDFLKA 293
             A+ GQ   A     ++
Sbjct: 122 CSAKQGQFGLAEAYLKRS 139

>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis} Length = 225

 Score = 44.6 bits (106), Expect = 2e-05
 Identities = 15/65 (23%), Positives = 24/65 (36%)

Query: 236 HLNMAACLLKLKRYEEAIGQCSLVLGEDENNVKALFRRGKARAELGQTDAAREDFLKAGK 295
              +A   ++ + Y +A       L  D  N  A   R +    L   D A+E F +A  
Sbjct: 11  KTQLAMEYMRGQDYRQATASIEDALKSDPKNELAWLVRAEIYQYLKVNDKAQESFRQALS 70

Query: 296 FAPED 300
             P+ 
Sbjct: 71  IKPDS 75

>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe} Length = 597

 Score = 66.0 bits (161), Expect = 5e-12
 Identities = 20/163 (12%), Positives = 40/163 (24%), Gaps = 32/163 (19%)

Query: 189 GNALFKEEKLEEAMQQYEMAIAYMGDDFMFQLF--------GKYRDMAL-----AVK-NP 234
            ++   E + ++A+  Y  A        +  LF        G    +A      +     
Sbjct: 414 AHSFAIEGEHDQAISAYTTAARLFQGTHLPYLFLGMQHMQLGNI-LLANEYLQSSYALFQ 472

Query: 235 ----CHLNMAACLLKLKRYEEAIGQ-------CSLVLGEDENNVKALFRRGKARAELGQT 283
                   +          + AI                ++         G A  +L   
Sbjct: 473 YDPLLLNELGVVAFNKSDMQTAINHFQNALLLVKKTQSNEKPWAATWANLGHAYRKLKMY 532

Query: 284 DAAREDFLKAGKFAPED----KSIARELRLLAEHEKAV--YKK 320
           DAA +   +    +  D     +IA           A+    +
Sbjct: 533 DAAIDALNQGLLLSTNDANVHTAIALVYLHKKIPGLAITHLHE 575

>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe} Length = 597

 Score = 61.0 bits (148), Expect = 2e-10
 Identities = 19/123 (15%), Positives = 39/123 (31%), Gaps = 11/123 (8%)

Query: 189 GNALFKEEKLEEAMQQYEMAIAYMGDDFMFQLFGKYRDMALAVKNPCHLNMAACLLKLKR 248
           G   F +  ++ A+  ++ A+  +      +     +  A         N+     KLK 
Sbjct: 482 GVVAFNKSDMQTAINHFQNALLLVKKTQSNE-----KPWAAT-----WANLGHAYRKLKM 531

Query: 249 YEEAIGQCSLVLGEDENNVKALFRRGKARAELGQTDAAREDFLKAGKFAPEDKSIARELR 308
           Y+ AI   +  L    N+                   A     ++   +P +  +A +L 
Sbjct: 532 YDAAIDALNQGLLLSTNDANVHTAIALVYLHKKIPGLAITHLHESLAISPNE-IMASDLL 590

Query: 309 LLA 311
             A
Sbjct: 591 KRA 593

>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe} Length = 597

 Score = 54.8 bits (132), Expect = 2e-08
 Identities = 16/138 (11%), Positives = 37/138 (26%), Gaps = 23/138 (16%)

Query: 189 GNALFKEEKLEEAMQQYEMAIAYMGDDFMFQLFGKYRDMALAVKNPCHLNMAACLLKLKR 248
            + LF   +  + +      +         ++     D         +    A L +   
Sbjct: 312 ADTLFVRSRFIDVLAITTKIL---------EIDPYNLD--------VYPLHLASLHESGE 354

Query: 249 YEEAIGQCSLVLGEDENNVKALFRRGKARAELGQTDAAREDFLKAGKFAPEDKS----IA 304
             +     + ++             G     + +   AR  F K+    P+        A
Sbjct: 355 KNKLYLISNDLVDRHPEKAVTWLAVGIYYLCVNKISEARRYFSKSSTMDPQFGPAWIGFA 414

Query: 305 RELRLLAEHEKAV--YKK 320
               +  EH++A+  Y  
Sbjct: 415 HSFAIEGEHDQAISAYTT 432

>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe} Length = 597

 Score = 54.1 bits (130), Expect = 4e-08
 Identities = 16/142 (11%), Positives = 36/142 (25%), Gaps = 23/142 (16%)

Query: 189 GNALFKEEKLEEAMQQYEMAIAYMGDDFMFQLFGKYRDMALAVKNPCHLNMAACLLKLKR 248
             +L +  +  +        +             ++ + A+       L +    L + +
Sbjct: 346 LASLHESGEKNKLYLISNDLVD------------RHPEKAVT-----WLAVGIYYLCVNK 388

Query: 249 YEEAIGQCSLVLGEDENNVKALFRRGKARAELGQTDAAREDFLKAGKFAPED----KSIA 304
             EA    S     D     A      + A  G+ D A   +  A +           + 
Sbjct: 389 ISEARRYFSKSSTMDPQFGPAWIGFAHSFAIEGEHDQAISAYTTAARLFQGTHLPYLFLG 448

Query: 305 RELRLLAEHEKAV--YKKQKEI 324
            +   L     A    +    +
Sbjct: 449 MQHMQLGNILLANEYLQSSYAL 470

>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe} Length = 597

 Score = 51.0 bits (122), Expect = 4e-07
 Identities = 16/138 (11%), Positives = 34/138 (24%), Gaps = 23/138 (16%)

Query: 189 GNALFKEEKLEEAMQQYEMAIAYMGDDFMFQLFGKYRDMALAVKNPCHLNMAACLLKLKR 248
                  E      + Y  +I  +                        L  A  L    R
Sbjct: 278 KLNKTSHEDELRRAEDYLSSINGLEKSS-----------------DLLLCKADTLFVRSR 320

Query: 249 YEEAIGQCSLVLGEDENNVKALFRRGKARAELGQTDAAREDFLKAGKFAPEDK----SIA 304
           + + +   + +L  D  N+        +  E G+ +             PE      ++ 
Sbjct: 321 FIDVLAITTKILEIDPYNLDVYPLHLASLHESGEKNKLYLISNDLVDRHPEKAVTWLAVG 380

Query: 305 RELRLLAEHEKAV--YKK 320
                + +  +A   + K
Sbjct: 381 IYYLCVNKISEARRYFSK 398

>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe} Length = 597

 Score = 47.1 bits (112), Expect = 6e-06
 Identities = 16/138 (11%), Positives = 38/138 (27%), Gaps = 1/138 (0%)

Query: 189 GNALFKEEKLEEAMQQYEMAIAYMGDDFMFQLFGKYRDMALAVKNPCHLNMAACLLKLKR 248
              L K    + A+        +  D+         +D  + ++             L  
Sbjct: 157 AFCLVKLYDWQGALNLLGETNPFRKDEKNANKL-LMQDGGIKLEASMCYLRGQVYTNLSN 215

Query: 249 YEEAIGQCSLVLGEDENNVKALFRRGKARAELGQTDAAREDFLKAGKFAPEDKSIARELR 308
           ++ A       L  D    +A  +           +      L    ++ ED +  R L 
Sbjct: 216 FDRAKECYKEALMVDAKCYEAFDQLVSNHLLTADEEWDLVLKLNYSTYSKEDAAFLRSLY 275

Query: 309 LLAEHEKAVYKKQKEIYK 326
           +L  ++ +   + +    
Sbjct: 276 MLKLNKTSHEDELRRAED 293

>1r9h_A FKB-6, FK506 binding protein family; structural genomics, peptidylprolyl isomerase, PSI, protein structure initiative; 1.80A {Caenorhabditis elegans} SCOP: d.26.1.1 Length = 135

 Score = 61.1 bits (149), Expect = 9e-12
 Identities = 36/109 (33%), Positives = 52/109 (47%), Gaps = 5/109 (4%)

Query: 54  VTKQIIKEGHG-QKPSKYSTCFLHYRAWAESTRHKFDDTWLEQQPLEMVLGKEKKEMTGL 112
           V K I KEG G  KP+  +T  +HY    E+   KFD +          LG+    + G 
Sbjct: 16  VLKLIKKEGQGVVKPTTGTTVKVHYVGTLENGT-KFDSSRDRGDQFSFNLGRGNV-IKGW 73

Query: 113 AIGVSSMKAGEHALLHVGWELGYGKEGSFSFPNVSPMADLVYEVVLIGF 161
            +GV++M  GE A   +  + GYG  G  S P +   A L++EV L  +
Sbjct: 74  DLGVATMTKGEVAEFTIRSDYGYGDAG--SPPKIPGGATLIFEVELFEW 120

>1u79_A FKBP-type peptidyl-prolyl CIS-trans isomerase 3; TFKBP13, FK-506 binding protein; 1.85A {Arabidopsis thaliana} SCOP: d.26.1.1 PDB: 1y0o_A Length = 129

 Score = 60.8 bits (148), Expect = 1e-11
 Identities = 26/127 (20%), Positives = 46/127 (36%), Gaps = 9/127 (7%)

Query: 42  KVDSEVEVLHEKVTKQIIKEGHGQKPSKYSTCFLHYRAWAESTRHKFDDTWLEQQPLEMV 101
               E  V    +       G+G +  K      HY    E+ +  FD ++   +PL   
Sbjct: 2   TTSCEFSVSPSGLAFCDKVVGYGPEAVKGQLIKAHYVGKLENGK-VFDSSYNRGKPLTFR 60

Query: 102 LGKEK-----KEMTGLAIGVSSMKAGEHALLHVGWELGYGKEG---SFSFPNVSPMADLV 153
           +G  +      +    + G+  M  G    L +  EL YG  G         + P + L+
Sbjct: 61  IGVGEVIKGWDQGILGSDGIPPMLTGGKRTLRIPPELAYGDRGAGCKGGSCLIPPASVLL 120

Query: 154 YEVVLIG 160
           +++  IG
Sbjct: 121 FDIEYIG 127

>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B* Length = 213

 Score = 62.8 bits (153), Expect = 1e-11
 Identities = 24/170 (14%), Positives = 50/170 (29%), Gaps = 37/170 (21%)

Query: 189 GNALFKEEKLEEAMQQYEMAIAYMGDDFMFQLFGKYRDMALAVKNPCHLNMAACLLKLKR 248
           G      + + EA + +  +I             + + +A+A     +        + ++
Sbjct: 44  GCMYTILKNMTEAEKAFTRSIN------------RDKHLAVA-----YFQRGMLYYQTEK 86

Query: 249 YEEAIGQCSLVLGEDENNV----------------KALFRRGKARAELGQTDAAREDFLK 292
           Y+ AI      L +   N                 + L+      A+  +   A E    
Sbjct: 87  YDLAIKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLAL 146

Query: 293 AGKFAPEDKSIARELRLLAEHEKAVYKKQKEIYKG-IFGPRPEPKQKKNW 341
           A     E +    + + +    K    +   I  G +F  RP  +Q    
Sbjct: 147 ATSMKSEPRHSKID-KAMECVWKQKLYEPVVIPVGRLF--RPNERQVAQL 193

>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B* Length = 213

 Score = 55.9 bits (135), Expect = 2e-09
 Identities = 23/149 (15%), Positives = 46/149 (30%), Gaps = 29/149 (19%)

Query: 189 GNALFKEEKLEEAMQQYEMAIAYMGDDFMFQLFGKYRDMALAVKNPCHLNMAACLLKLKR 248
           G     ++  + A+  +                      +         N+      LK 
Sbjct: 13  GVLAADKKDWKGALDAFSAVQD---------------PHSRI-----CFNIGCMYTILKN 52

Query: 249 YEEAIGQCSLVLGEDENNVKALFRRGKARAELGQTDAAREDFLKAGKFAPEDKSIARELR 308
             EA    +  +  D++   A F+RG    +  + D A +D  +A      ++ I  ++ 
Sbjct: 53  MTEAEKAFTRSINRDKHLAVAYFQRGMLYYQTEKYDLAIKDLKEALIQLRGNQLIDYKIL 112

Query: 309 LLAEHEKA---------VYKKQKEIYKGI 328
            L     A         +Y K++E  K  
Sbjct: 113 GLQFKLFACEVLYNIAFMYAKKEEWKKAE 141

>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1 Length = 388

 Score = 64.1 bits (157), Expect = 1e-11
 Identities = 26/138 (18%), Positives = 45/138 (32%), Gaps = 23/138 (16%)

Query: 189 GNALFKEEKLEEAMQQYEMAIAYMGDDFMFQLFGKYRDMALAVKNPCHLNMAACLLKLKR 248
           GN L +    + A+  Y  A++   +             A+      H N+A    +   
Sbjct: 210 GNVLKEARIFDRAVAAYLRALSLSPNH------------AVV-----HGNLACVYYEQGL 252

Query: 249 YEEAIGQCSLVLGEDENNVKALFRRGKARAELGQTDAAREDFLKAGKFAPED----KSIA 304
            + AI      +    +   A      A  E G    A + +  A +  P       ++A
Sbjct: 253 IDLAIDTYRRAIELQPHFPDAYCNLANALKEKGSVAEAEDCYNTALRLCPTHADSLNNLA 312

Query: 305 RELRLLAEHEKAV--YKK 320
              R     E+AV  Y+K
Sbjct: 313 NIKREQGNIEEAVRLYRK 330

>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1 Length = 388

 Score = 63.3 bits (155), Expect = 2e-11
 Identities = 27/138 (19%), Positives = 52/138 (37%), Gaps = 23/138 (16%)

Query: 189 GNALFKEEKLEEAMQQYEMAIAYMGDDFMFQLFGKYRDMALAVKNPCHLNMAACLLKLKR 248
           GN   +  +L+EA++ Y  A+         +L   + D         ++N+AA L+    
Sbjct: 74  GNVYKERGQLQEAIEHYRHAL---------RLKPDFID--------GYINLAAALVAAGD 116

Query: 249 YEEAIGQCSLVLGEDENNVKALFRRGKARAELGQTDAAREDFLKAGKFAPED----KSIA 304
            E A+      L  + +        G     LG+ + A+  +LKA +  P       ++ 
Sbjct: 117 MEGAVQAYVSALQYNPDLYCVRSDLGNLLKALGRLEEAKACYLKAIETQPNFAVAWSNLG 176

Query: 305 RELRLLAEHEKAV--YKK 320
                  E   A+  ++K
Sbjct: 177 CVFNAQGEIWLAIHHFEK 194

>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1 Length = 388

 Score = 63.3 bits (155), Expect = 3e-11
 Identities = 32/158 (20%), Positives = 57/158 (36%), Gaps = 29/158 (18%)

Query: 189 GNALFKEEKLEEAMQQYEMAI--------AY--MGDDFMFQLFGKYR------DMALAVK 232
           GN L    +LEEA   Y  AI        A+  +G  F  Q  G+        + A+ + 
Sbjct: 142 GNLLKALGRLEEAKACYLKAIETQPNFAVAWSNLGCVFNAQ--GEIWLAIHHFEKAVTL- 198

Query: 233 NP----CHLNMAACLLKLKRYEEAIGQCSLVLGEDENNVKALFRRGKARAELGQTDAARE 288
           +P     ++N+   L + + ++ A+      L    N+            E G  D A +
Sbjct: 199 DPNFLDAYINLGNVLKEARIFDRAVAAYLRALSLSPNHAVVHGNLACVYYEQGLIDLAID 258

Query: 289 DFLKAGKFAPED----KSIARELRLLAEHEKAV--YKK 320
            + +A +  P       ++A  L+      +A   Y  
Sbjct: 259 TYRRAIELQPHFPDAYCNLANALKEKGSVAEAEDCYNT 296

>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1 Length = 388

 Score = 63.3 bits (155), Expect = 3e-11
 Identities = 29/156 (18%), Positives = 49/156 (31%), Gaps = 25/156 (16%)

Query: 189 GNALFKEEKLEEAMQQYEMAIAYMGDDF--------MFQLFGKYRDMALAV------KNP 234
             AL     +E A+Q Y  A+ Y  D +        + +  G+  + A A         P
Sbjct: 108 AAALVAAGDMEGAVQAYVSALQYNPDLYCVRSDLGNLLKALGRL-EEAKACYLKAIETQP 166

Query: 235 ----CHLNMAACLLKLKRYEEAIGQCSLVLGEDENNVKALFRRGKARAELGQTDAAREDF 290
                  N+            AI      +  D N + A    G    E    D A   +
Sbjct: 167 NFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLDPNFLDAYINLGNVLKEARIFDRAVAAY 226

Query: 291 LKAGKFAPED----KSIARELRLLAEHEKAV--YKK 320
           L+A   +P       ++A         + A+  Y++
Sbjct: 227 LRALSLSPNHAVVHGNLACVYYEQGLIDLAIDTYRR 262

>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1 Length = 388

 Score = 62.9 bits (154), Expect = 3e-11
 Identities = 19/112 (16%), Positives = 33/112 (29%), Gaps = 17/112 (15%)

Query: 189 GNALFKEEKLEEAMQQYEMAIAYMGDDFMFQLFGKYRDMALAVKNPCHLNMAACLLKLKR 248
            NAL ++  + EA   Y  A+                  A +       N+A    +   
Sbjct: 278 ANALKEKGSVAEAEDCYNTALRLCPTH------------ADS-----LNNLANIKREQGN 320

Query: 249 YEEAIGQCSLVLGEDENNVKALFRRGKARAELGQTDAAREDFLKAGKFAPED 300
            EEA+      L        A         + G+   A   + +A + +P  
Sbjct: 321 IEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRISPTF 372

>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1 Length = 388

 Score = 58.3 bits (142), Expect = 1e-09
 Identities = 20/138 (14%), Positives = 43/138 (31%), Gaps = 23/138 (16%)

Query: 189 GNALFKEEKLEEAMQQYEMAIAYMGDDFMFQLFGKYRDMALAVKNPCHLNMAACLLKLKR 248
            +  ++    E A +               +                 L +++   + +R
Sbjct: 6   AHREYQAGDFEAAERHCMQLW---------RQEPDNTG--------VLLLLSSIHFQCRR 48

Query: 249 YEEAIGQCSLVLGEDENNVKALFRRGKARAELGQTDAAREDFLKAGKFAPEDK----SIA 304
            + +    +L + ++    +A    G    E GQ   A E +  A +  P+      ++A
Sbjct: 49  LDRSAHFSTLAIKQNPLLAEAYSNLGNVYKERGQLQEAIEHYRHALRLKPDFIDGYINLA 108

Query: 305 RELRLLAEHEKAV--YKK 320
             L    + E AV  Y  
Sbjct: 109 AALVAAGDMEGAVQAYVS 126

>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1 Length = 388

 Score = 52.5 bits (127), Expect = 8e-08
 Identities = 12/90 (13%), Positives = 31/90 (34%), Gaps = 6/90 (6%)

Query: 237 LNMAACLLKLKRYEEAIGQCSLVLGEDENNVKALFRRGKARAELGQTDAAREDFLKAGKF 296
           + +A    +   +E A   C  +  ++ +N   L        +  + D +      A K 
Sbjct: 3   MELAHREYQAGDFEAAERHCMQLWRQEPDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQ 62

Query: 297 APED----KSIARELRLLAEHEKAV--YKK 320
            P       ++    +   + ++A+  Y+ 
Sbjct: 63  NPLLAEAYSNLGNVYKERGQLQEAIEHYRH 92

>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii} Length = 272

 Score = 63.1 bits (154), Expect = 2e-11
 Identities = 21/145 (14%), Positives = 40/145 (27%), Gaps = 26/145 (17%)

Query: 189 GNALFKEEKLEEAMQQYEMAIAYMGDDFMFQLFGKYRDMALAVKNPCHLNMAACLLKLKR 248
           G  L K+ +   A+QQY+ A+                          +  + +       
Sbjct: 81  GKILMKKGQDSLAIQQYQAAVDRDTTRLD-----------------MYGQIGSYFYNKGN 123

Query: 249 YEEAIGQCSLVLGEDENNVKALFRRGKARAELGQTDAAREDFLKAGKFAPEDK------- 301
           +  AI      +     + K  +  G+A     +   A   F+K  +  P          
Sbjct: 124 FPLAIQYMEKQIRPTTTDPKVFYELGQAYYYNKEYVKADSSFVKVLELKPNIYIGYLWRA 183

Query: 302 SIARELRLLAEHEKAV--YKKQKEI 324
                     +   A   Y+K  E+
Sbjct: 184 RANAAQDPDTKQGLAKPYYEKLIEV 208

>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii} Length = 272

 Score = 61.1 bits (149), Expect = 7e-11
 Identities = 25/159 (15%), Positives = 43/159 (27%), Gaps = 28/159 (17%)

Query: 189 GNALFKEEKLEEAMQQYEMAIAYMGDDFM--------FQLFGKYRDMALAV--------- 231
            + LFK     EA++ +    A   +           +    KY D+A            
Sbjct: 10  ADFLFKNNNYAEAIEVFNKLEAKKYNSPYIYNRRAVCYYELAKY-DLAQKDIETYFSKVN 68

Query: 232 KNP----CHLNMAACLLKLKRYEEAIGQCSLVLGEDENNVKALFRRGKARAELGQTDAAR 287
                          L+K  +   AI Q    +  D   +    + G      G    A 
Sbjct: 69  ATKAKSADFEYYGKILMKKGQDSLAIQQYQAAVDRDTTRLDMYGQIGSYFYNKGNFPLAI 128

Query: 288 EDFLKAGKFAPEDKS----IARELRLLAEHEKAV--YKK 320
           +   K  +    D      + +      E+ KA   + K
Sbjct: 129 QYMEKQIRPTTTDPKVFYELGQAYYYNKEYVKADSSFVK 167

>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii} Length = 272

 Score = 50.0 bits (120), Expect = 4e-07
 Identities = 18/94 (19%), Positives = 31/94 (32%), Gaps = 9/94 (9%)

Query: 236 HLNMAACLLKLKRYEEAIGQCSLVLGEDENNVKALFRRGKARAELGQTDAARED---FLK 292
               A  L K   Y EAI   + +  +  N+     RR     EL + D A++D   +  
Sbjct: 6   EFRYADFLFKNNNYAEAIEVFNKLEAKKYNSPYIYNRRAVCYYELAKYDLAQKDIETYFS 65

Query: 293 AGKFAPED----KSIARELRLLAEHEKAV--YKK 320
                       +   + L    +   A+  Y+ 
Sbjct: 66  KVNATKAKSADFEYYGKILMKKGQDSLAIQQYQA 99

>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii} Length = 272

 Score = 45.7 bits (109), Expect = 1e-05
 Identities = 19/142 (13%), Positives = 36/142 (25%), Gaps = 30/142 (21%)

Query: 189 GNALFKEEKLEEAMQQYEMAIAYMGDDF--------MFQLFGKYRDMALAV------KNP 234
           G+  + +     A+Q  E  I     D          +    +Y   A +         P
Sbjct: 115 GSYFYNKGNFPLAIQYMEKQIRPTTTDPKVFYELGQAYYYNKEY-VKADSSFVKVLELKP 173

Query: 235 ----CHLNMAACLLKLKR----------YEEAIGQCSLVLGEDENN-VKALFRRGKARAE 279
                +L  A                  YE+ I  C+    + ++  ++A          
Sbjct: 174 NIYIGYLWRARANAAQDPDTKQGLAKPYYEKLIEVCAPGGAKYKDELIEANEYIAYYYTI 233

Query: 280 LGQTDAAREDFLKAGKFAPEDK 301
                 A   +       P +K
Sbjct: 234 NRDKVKADAAWKNILALDPTNK 255

>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii} Length = 272

 Score = 45.3 bits (108), Expect = 1e-05
 Identities = 13/122 (10%), Positives = 27/122 (22%), Gaps = 28/122 (22%)

Query: 189 GNALFKEEKLEEAMQQYEMAI--------AY--MGDDFMFQLFGKYRDMALA-------- 230
           G A +  ++  +A   +   +         Y         Q     + +A          
Sbjct: 149 GQAYYYNKEYVKADSSFVKVLELKPNIYIGYLWRARANAAQDPDTKQGLAKPYYEKLIEV 208

Query: 231 ------VKNP----CHLNMAACLLKLKRYEEAIGQCSLVLGEDENNVKALFRRGKARAEL 280
                          +  +A      +   +A      +L  D  N KA+          
Sbjct: 209 CAPGGAKYKDELIEANEYIAYYYTINRDKVKADAAWKNILALDPTNKKAIDGLKMKLEHH 268

Query: 281 GQ 282
             
Sbjct: 269 HH 270

>1yat_A FK506 binding protein; HET: FK5; 2.50A {Saccharomyces cerevisiae} SCOP: d.26.1.1 Length = 113

 Score = 59.5 bits (145), Expect = 2e-11
 Identities = 29/116 (25%), Positives = 48/116 (41%), Gaps = 5/116 (4%)

Query: 48  EVLHEKVTKQIIKEGHG-QKPSKYSTCFLHYRAWAESTRHKFDDTWLEQQPLEMVLGKEK 106
           EV+   V    I  G G   P       +HY    E+ + KFD +     P +  +G  +
Sbjct: 2   EVIEGNVKIDRISPGDGATFPKTGDLVTIHYTGTLENGQ-KFDSSVDRGSPFQCNIGVGQ 60

Query: 107 KEMTGLAIGVSSMKAGEHALLHVGWELGYGKEGSFSFPNVSPMADLVYEVVLIGFD 162
             + G  +G+  +  GE A L +     YG  G      + P + LV++V L+  +
Sbjct: 61  V-IKGWDVGIPKLSVGEKARLTIPGPYAYGPRG--FPGLIPPNSTLVFDVELLKVN 113

>3o5q_A Peptidyl-prolyl CIS-trans isomerase FKBP5; FK-506 binding domain, HSP90 cochaperone, immunophiline, PEP prolyl isomerase; 0.96A {Homo sapiens} PDB: 3o5m_A 3o5l_A 3o5o_A 3o5p_A 3o5r_A* 4drq_A* 3o5j_A 3o5g_A 3o5i_A 3o5k_A Length = 128

 Score = 59.6 bits (145), Expect = 2e-11
 Identities = 33/109 (30%), Positives = 53/109 (48%), Gaps = 5/109 (4%)

Query: 54  VTKQIIKEGHGQK-PSKYSTCFLHYRAWAESTRHKFDDTWLEQQPLEMVLGKEKKEMTGL 112
           V K + + G+G++ P      ++HY+    + + KFD +    +P    LGK +  +   
Sbjct: 21  VLKIVKRVGNGEETPMIGDKVYVHYKGKLSNGK-KFDSSHDRNEPFVFSLGKGQV-IKAW 78

Query: 113 AIGVSSMKAGEHALLHVGWELGYGKEGSFSFPNVSPMADLVYEVVLIGF 161
            IGV++MK GE   L    E  YG  G  S P +   A L +E+ L+ F
Sbjct: 79  DIGVATMKKGEICHLLCKPEYAYGSAG--SLPKIPSNATLFFEIELLDF 125

>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1 Length = 243

 Score = 61.8 bits (151), Expect = 3e-11
 Identities = 24/125 (19%), Positives = 42/125 (33%), Gaps = 23/125 (18%)

Query: 189 GNALFKEEKLEEAMQQYEMAI--------AY--MGDDFMFQLFGKYR------DMALAVK 232
           GN    +E  +EA   +E A+         +  +G   +     + +        A+ + 
Sbjct: 98  GNVYVVKEMYKEAKDMFEKALRAGMENGDLFYMLGTVLVKL--EQPKLALPYLQRAVEL- 154

Query: 233 NP----CHLNMAACLLKLKRYEEAIGQCSLVLGEDENNVKALFRRGKARAELGQTDAARE 288
           N            CL      +EA+ Q + V  +D  +  A +  G   A     + A E
Sbjct: 155 NENDTEARFQFGMCLANEGMLDEALSQFAAVTEQDPGHADAFYNAGVTYAYKENREKALE 214

Query: 289 DFLKA 293
              KA
Sbjct: 215 MLDKA 219

>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1 Length = 243

 Score = 59.8 bits (146), Expect = 1e-10
 Identities = 32/160 (20%), Positives = 55/160 (34%), Gaps = 33/160 (20%)

Query: 189 GNALFKEEKLEEAMQQYEMAI--------AY--MGDDFMFQLFGKYR------DMALAVK 232
            N L    +LE A+  Y+ A+        AY   G   ++ +   Y+      + AL   
Sbjct: 64  ANLLSSVNELERALAFYDKALELDSSAATAYYGAG--NVYVVKEMYKEAKDMFEKALRA- 120

Query: 233 NP----CHLNMAACLLKLKRYEEAIGQCSLVLGEDENNVKALFRRGKARAELGQTDAARE 288
                     +   L+KL++ + A+      +  +EN+ +A F+ G   A  G  D A  
Sbjct: 121 GMENGDLFYMLGTVLVKLEQPKLALPYLQRAVELNENDTEARFQFGMCLANEGMLDEALS 180

Query: 289 DFLKAGKFAPED------KSIARELRLLAEHEKAV--YKK 320
            F    +  P          +          EKA+    K
Sbjct: 181 QFAAVTEQDPGHADAFYNAGVT--YAYKENREKALEMLDK 218

>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1 Length = 243

 Score = 54.8 bits (133), Expect = 8e-09
 Identities = 22/140 (15%), Positives = 43/140 (30%), Gaps = 27/140 (19%)

Query: 189 GNALFKEEKLEEAMQQYEMAIAYMGDDFMFQLFGKYRDMALAVKNPCHLNMAACLLKLKR 248
                +    E+A + +  AI    +D +                  ++N A  L  +  
Sbjct: 30  MGRGSEFGDYEKAAEAFTKAIEENKEDAI-----------------PYINFANLLSSVNE 72

Query: 249 YEEAIGQCSLVLGEDENNVKALFRRGKARAELGQTDAAREDFLKAGKFAPED------KS 302
            E A+      L  D +   A +  G           A++ F KA +   E+        
Sbjct: 73  LERALAFYDKALELDSSAATAYYGAGNVYVVKEMYKEAKDMFEKALRAGMENGDLFYMLG 132

Query: 303 IARELRLLAEHEKAV--YKK 320
               L  L + + A+   ++
Sbjct: 133 TV--LVKLEQPKLALPYLQR 150

>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1 Length = 243

 Score = 49.4 bits (119), Expect = 4e-07
 Identities = 14/94 (14%), Positives = 25/94 (26%), Gaps = 17/94 (18%)

Query: 189 GNALFKEEKLEEAMQQYEMAIAYMGDDFMFQLFGKYRDMALAVKNPCHLNMAACLLKLKR 248
           G  L  E  L+EA+ Q+                      A A       N        + 
Sbjct: 166 GMCLANEGMLDEALSQFAAVTEQDPGH------------ADA-----FYNAGVTYAYKEN 208

Query: 249 YEEAIGQCSLVLGEDENNVKALFRRGKARAELGQ 282
            E+A+      +    +++ AL  +         
Sbjct: 209 REKALEMLDKAIDIQPDHMLALHAKKLLGHHHHH 242

>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1 Length = 243

 Score = 49.1 bits (118), Expect = 6e-07
 Identities = 9/129 (6%), Positives = 34/129 (26%), Gaps = 19/129 (14%)

Query: 198 LEEAMQQYEMAIAYMGDDFMFQLFGKYRDMALAVKNPCHLNMAACLLKLKRYEEAIGQCS 257
           +  +   +  +                      + +           +   YE+A    +
Sbjct: 1   MGSSHHHHHHSS-------------GLVPRGSHMASMTGGQQMGRGSEFGDYEKAAEAFT 47

Query: 258 LVLGEDENNVKALFRRGKARAELGQTDAAREDFLKAGKFAPEDK----SIARELRLLAEH 313
             + E++ +           + + + + A   + KA +                 +   +
Sbjct: 48  KAIEENKEDAIPYINFANLLSSVNELERALAFYDKALELDSSAATAYYGAGNVYVVKEMY 107

Query: 314 EKAV--YKK 320
           ++A   ++K
Sbjct: 108 KEAKDMFEK 116

>4dip_A Peptidyl-prolyl CIS-trans isomerase FKBP14; structural genomics, structural genomics consortium, SGC, PE prolyl CIS-trans isomerase; 1.82A {Homo sapiens} Length = 125

 Score = 58.8 bits (143), Expect = 4e-11
 Identities = 31/127 (24%), Positives = 50/127 (39%), Gaps = 13/127 (10%)

Query: 37  GDGPPKVDSEVEVLHEKVTKQIIKEGHGQKPSKYSTCFLHYRAWAESTRHKFDDTWL--E 94
           G   P+ + ++EVL +            +K        +HY  + E     F  T     
Sbjct: 6   GALIPEPEVKIEVLQKP-------FICHRKTKGGDLMLVHYEGYLEKDGSLFHSTHKHNN 58

Query: 95  QQPLEMVLGKEKKEMTGLAIGVSSMKAGEHALLHVGWELGYGKEGSFSFPNVSPMADLVY 154
            QP+   LG   + + G   G+  M  GE   L +   LGYGKEG      + P + L++
Sbjct: 59  GQPIWFTLGI-LEALKGWDQGLKGMCVGEKRKLIIPPALGYGKEGK---GKIPPESTLIF 114

Query: 155 EVVLIGF 161
            + L+  
Sbjct: 115 NIDLLEI 121

>2pbc_A FK506-binding protein 2; endoplasmic reticulum, isomerase, polymorphism, rotamase, structural genomics, structural genomics consortium, SGC; 1.80A {Homo sapiens} Length = 102

 Score = 57.2 bits (139), Expect = 1e-10
 Identities = 33/107 (30%), Positives = 46/107 (42%), Gaps = 8/107 (7%)

Query: 62  GHGQKPSKYSTCFLHYRAWAESTRHKFDDTWLEQQPLEMVLGKEK--KEMTGLAIGVSSM 119
           G   K  K     +HY    E    +FD +  + QP    LG  +  K   G   G+  M
Sbjct: 1   GSPIKSRKGDVLHMHYTGKLEDGT-EFDSSLPQNQPFVFSLGTGQVIK---GWDQGLLGM 56

Query: 120 KAGEHALLHVGWELGYGKEGSFSFPNVSPMADLVYEVVLIGFDETKE 166
             GE   L +  ELGYG+ G  + P +   A LV+EV L+  +   E
Sbjct: 57  CEGEKRKLVIPSELGYGERG--APPKIPGGATLVFEVELLKIERRTE 101

>3tax_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; thiocarbamate crosslink, covalent inhibitor, gylcosyltransfe inhibitor, O-GLCNAC transferase; HET: UDP; 1.88A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* Length = 723

 Score = 61.4 bits (148), Expect = 2e-10
 Identities = 21/138 (15%), Positives = 46/138 (33%), Gaps = 23/138 (16%)

Query: 189 GNALFKEEKLEEAMQQYEMAIAYMGDDFMFQLFGKYRDMALAVKNPCHLNMAACLLKLKR 248
            N   ++  +EEA++ Y  A+    +                     H N+A+ L +  +
Sbjct: 16  ANIKREQGNIEEAVRLYRKALEVFPEFAA-----------------AHSNLASVLQQQGK 58

Query: 249 YEEAIGQCSLVLGEDENNVKALFRRGKARAELGQTDAAREDFLKAGKFAPED----KSIA 304
            +EA+      +        A    G    E+     A + + +A +  P       ++A
Sbjct: 59  LQEALMHYKEAIRISPTFADAYSNMGNTLKEMQDVQGALQCYTRAIQINPAFADAHSNLA 118

Query: 305 RELRLLAEHEKAV--YKK 320
              +      +A+  Y+ 
Sbjct: 119 SIHKDSGNIPEAIASYRT 136

>3tax_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; thiocarbamate crosslink, covalent inhibitor, gylcosyltransfe inhibitor, O-GLCNAC transferase; HET: UDP; 1.88A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* Length = 723

 Score = 59.1 bits (142), Expect = 1e-09
 Identities = 26/182 (14%), Positives = 46/182 (25%), Gaps = 25/182 (13%)

Query: 189 GNALFKEEKLEEAMQQYEMAIAYMGDD--------FMFQLFGKYR------DMALAVKNP 234
            + L ++ KL+EA+  Y+ AI                 +     +        A+ + NP
Sbjct: 50  ASVLQQQGKLQEALMHYKEAIRISPTFADAYSNMGNTLKEMQDVQGALQCYTRAIQI-NP 108

Query: 235 ----CHLNMAACLLKLKRYEEAIGQCSLVLGEDENNVKALFRRGKARAELGQTDAAREDF 290
                H N+A+         EAI      L    +   A          +       E  
Sbjct: 109 AFADAHSNLASIHKDSGNIPEAIASYRTALKLKPDFPDAYCNLAHCLQIVCDWTDYDERM 168

Query: 291 LKAGKFAPEDKSIARELRLLAEH------EKAVYKKQKEIYKGIFGPRPEPKQKKNWLII 344
            K      +     R   +   H           K   E +  +   +     K  +   
Sbjct: 169 KKLVSIVADQLEKNRLPSVHPHHSMLYPLSHGFRKAIAERHGNLCLDKINVLHKPPYEHP 228

Query: 345 FW 346
             
Sbjct: 229 KD 230

>3tax_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; thiocarbamate crosslink, covalent inhibitor, gylcosyltransfe inhibitor, O-GLCNAC transferase; HET: UDP; 1.88A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* Length = 723

 Score = 45.6 bits (107), Expect = 2e-05
 Identities = 11/65 (16%), Positives = 20/65 (30%)

Query: 236 HLNMAACLLKLKRYEEAIGQCSLVLGEDENNVKALFRRGKARAELGQTDAAREDFLKAGK 295
             N+A    +    EEA+      L        A         + G+   A   + +A +
Sbjct: 12  LNNLANIKREQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIR 71

Query: 296 FAPED 300
            +P  
Sbjct: 72  ISPTF 76

>3o5e_A Peptidyl-prolyl CIS-trans isomerase FKBP5; FK-506 binding domain, HSP90 cochaperone, immunophiline, PEP prolyl isomerase; 1.60A {Homo sapiens} PDB: 3o5f_A Length = 144

 Score = 56.2 bits (136), Expect = 6e-10
 Identities = 33/109 (30%), Positives = 53/109 (48%), Gaps = 5/109 (4%)

Query: 54  VTKQIIKEGHGQK-PSKYSTCFLHYRAWAESTRHKFDDTWLEQQPLEMVLGKEKKEMTGL 112
           V K + + G+G++ P      ++HY+    + + KFD +    +P    LGK  + +   
Sbjct: 37  VLKIVKRVGNGEETPMIGDKVYVHYKGKLSNGK-KFDSSHDRNEPFVFSLGK-GQVIKAW 94

Query: 113 AIGVSSMKAGEHALLHVGWELGYGKEGSFSFPNVSPMADLVYEVVLIGF 161
            IGV++MK GE   L    E  YG  G  S P +   A L +E+ L+ F
Sbjct: 95  DIGVATMKKGEICHLLCKPEYAYGSAG--SLPKIPSNATLFFEIELLDF 141

>2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8 Length = 159

 Score = 56.4 bits (135), Expect = 6e-10
 Identities = 28/156 (17%), Positives = 49/156 (31%), Gaps = 20/156 (12%)

Query: 173 MTVEERIGAADRRKMDGNALFKEEKLEEAMQQYEMAIAYMGDDFMFQLFGKYRDMALAVK 232
           M   + +  A     D        + +EA      A+         + F      A    
Sbjct: 2   MKPLKEVVGAYLALSDAQRQLVAGEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAF--- 58

Query: 233 NPCHLNMAACLLKLKRYEEAIGQCSLVLG-----------EDENNVKALFRRGKARAELG 281
             CH  +A  L  L+ ++EA+      L            E +  + A++ R  A   LG
Sbjct: 59  --CHAGLAEALAGLRSFDEALHSADKALHYFNRRGELNQDEGKLWISAVYSRALALDGLG 116

Query: 282 QTDAAREDFLKAGKFAPEDK----SIARELRLLAEH 313
           +   A  +F K  +   E K       R + +  + 
Sbjct: 117 RGAEAMPEFKKVVEMIEERKGETPGKERMMEVAIDR 152

>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1 Length = 275

 Score = 57.7 bits (140), Expect = 1e-09
 Identities = 22/158 (13%), Positives = 42/158 (26%), Gaps = 25/158 (15%)

Query: 189 GNALFKEEKLEEAMQQYEMAI--------AYMGDDFMFQLFGKYRDMALAVK-------- 232
           G AL+   + + A                  +      Q   + +   +  +        
Sbjct: 118 GIALYYGGRDKLAQDDLLAFYQDDPNDPFRSLWLYLAEQKLDEKQAKEVLKQHFEKSDKE 177

Query: 233 NPCHLNMAACLLKLK---RYEEAIGQCSLVLGEDENNVKALFRRGKARAELGQTDAARED 289
                 +   L  +      E      +      E+  +  F  GK    LG  D+A   
Sbjct: 178 QWGWNIVEFYLGNISEQTLMERLKADATDNTSLAEHLSETNFYLGKYYLSLGDLDSATAL 237

Query: 290 FLKAGKFAPED----KSIARELRLLAEHEKAV--YKKQ 321
           F  A      +    +    EL LL + +  +    +Q
Sbjct: 238 FKLAVANNVHNFVEHRYALLELSLLGQDQDDLAESDQQ 275

>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1 Length = 275

 Score = 56.9 bits (138), Expect = 2e-09
 Identities = 21/112 (18%), Positives = 31/112 (27%), Gaps = 17/112 (15%)

Query: 189 GNALFKEEKLEEAMQQYEMAIAYMGDDFMFQLFGKYRDMALAVKNPCHLNMAACLLKLKR 248
           G           A   +  A+A               DM           +   L +   
Sbjct: 50  GVLYDSLGLRALARNDFSQALAI------------RPDMPEV-----FNYLGIYLTQAGN 92

Query: 249 YEEAIGQCSLVLGEDENNVKALFRRGKARAELGQTDAAREDFLKAGKFAPED 300
           ++ A      VL  D     A   RG A    G+   A++D L   +  P D
Sbjct: 93  FDAAYEAFDSVLELDPTYNYAHLNRGIALYYGGRDKLAQDDLLAFYQDDPND 144

>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1 Length = 275

 Score = 45.0 bits (107), Expect = 1e-05
 Identities = 19/101 (18%), Positives = 31/101 (30%), Gaps = 14/101 (13%)

Query: 232 KNPCHLNMAACLLKLKRYEEAIGQCSLVL----GEDENNVKALFRRGKARAELGQTDAAR 287
                  +A  L    + E  + +   +L      D+   + L+ RG     LG    AR
Sbjct: 4   SWRKSEVLAVPLQPTLQQEVILARMEQILASRALTDDERAQLLYERGVLYDSLGLRALAR 63

Query: 288 EDFLKAGKFAPED------KSIARELRLLAEHEKAV--YKK 320
            DF +A    P+         I   L      + A   +  
Sbjct: 64  NDFSQALAIRPDMPEVFNYLGIY--LTQAGNFDAAYEAFDS 102

>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis} Length = 115

 Score = 54.6 bits (132), Expect = 1e-09
 Identities = 17/117 (14%), Positives = 37/117 (31%), Gaps = 19/117 (16%)

Query: 198 LEEAMQQYEMAIAYMGDDFMFQLFGKYRDMALAVKNPCHLNMAACLLKLKRYEEAIGQCS 257
           ++   ++ E  +A   D+             L         +     + ++++ A+    
Sbjct: 1   MQAITERLEAMLAQGTDN------------MLL-----RFTLGKTYAEHEQFDAALPHLR 43

Query: 258 LVLGEDENNVKALFRRGKARAELGQTDAAREDFLKAGKFAPE--DKSIARELRLLAE 312
             L  D     A    GK     G    AR+ +      A    D+ + +EL++   
Sbjct: 44  AALDFDPTYSVAWKWLGKTLQGQGDRAGARQAWESGLAAAQSRGDQQVVKELQVFLR 100

>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A Length = 186

 Score = 55.9 bits (136), Expect = 1e-09
 Identities = 21/140 (15%), Positives = 42/140 (30%), Gaps = 27/140 (19%)

Query: 189 GNALFKEEKLEEAMQQYEMAIAYMGDDFMFQLFGKYRDMALAVKNPCHLNMAACLLKLKR 248
           G +  K  +  +A+   E        D                     L++    +K   
Sbjct: 15  GISHAKAGRYSQAVMLLEQVYDADAFD------------VDV-----ALHLGIAYVKTGA 57

Query: 249 YEEAIGQCSLVLGEDENNVKALFRRGKARAELGQTDAAREDFLKAGKFAPED------KS 302
            +         L +  +NVK     G    ++ + D A    +K  +  P +        
Sbjct: 58  VDRGTELLERSLADAPDNVKVATVLGLTYVQVQKYDLAVPLLIKVAEANPINFNVRFRLG 117

Query: 303 IARELRLLAEHEKAV--YKK 320
           +A  L  L   ++A+  +K 
Sbjct: 118 VA--LDNLGRFDEAIDSFKI 135

>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A Length = 186

 Score = 54.8 bits (133), Expect = 3e-09
 Identities = 26/144 (18%), Positives = 49/144 (34%), Gaps = 35/144 (24%)

Query: 189 GNALFKEEKLEEAMQQYEMAIAYMGDDFMFQLFGKYRDMALAVKNP----CHLNMAACLL 244
           G A  K   ++   +  E ++A                       P        +    +
Sbjct: 49  GIAYVKTGAVDRGTELLERSLAD---------------------APDNVKVATVLGLTYV 87

Query: 245 KLKRYEEAIGQCSLVLGEDENNVKALFRRGKARAELGQTDAAREDFLKAGKFAPED---- 300
           ++++Y+ A+     V   +  N    FR G A   LG+ D A + F  A    P +    
Sbjct: 88  QVQKYDLAVPLLIKVAEANPINFNVRFRLGVALDNLGRFDEAIDSFKIALGLRPNEGKVH 147

Query: 301 --KSIARELRLLAEHEKAV--YKK 320
              + +     +  HE+A+  +KK
Sbjct: 148 RAIAFS--YEQMGRHEEALPHFKK 169

>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A Length = 186

 Score = 44.4 bits (106), Expect = 1e-05
 Identities = 17/93 (18%), Positives = 32/93 (34%), Gaps = 10/93 (10%)

Query: 236 HLNMAACLLKLKRYEEAIGQCSLVLGEDENNVKALFRRGKARAELGQTDAAREDFLKAGK 295
           + +      K  RY +A+     V   D  +V      G A  + G  D   E   ++  
Sbjct: 11  YRDKGISHAKAGRYSQAVMLLEQVYDADAFDVDVALHLGIAYVKTGAVDRGTELLERSLA 70

Query: 296 FAPED------KSIARELRLLAEHEKAV--YKK 320
            AP++        +      + +++ AV    K
Sbjct: 71  DAPDNVKVATVLGLT--YVQVQKYDLAVPLLIK 101

>2lgo_A FKBP; infectious disease, isomerase, giardiasis, ssgcid, structura genomics, seattle structural genomics center for infectious; NMR {Giardia lamblia} Length = 130

 Score = 54.2 bits (131), Expect = 2e-09
 Identities = 33/117 (28%), Positives = 55/117 (47%), Gaps = 9/117 (7%)

Query: 47  VEVLHEKVTKQIIKEGHG-QKPSKYSTCFLHYRAWAESTRHKFDDTWLEQQPLEMVLGKE 105
              +  ++ K+++  G G  KP       +HY       + +FD +    +P +  LG  
Sbjct: 19  PGSMSAQLEKKVLTPGDGVTKPQAGKKVTVHYDGRFPDGK-QFDSSRSRGKPFQFTLGAG 77

Query: 106 K--KEMTGLAIGVSSMKAGEHALLHVGWELGYGKEGSFSFPNVSPMADLVYEVVLIG 160
           +  K   G   GV++M  GE AL  + ++L YG+ G    P + P A LV+EV L+ 
Sbjct: 78  EVIK---GWDQGVATMTLGEKALFTIPYQLAYGERG--YPPVIPPKATLVFEVELLA 129

>1q6h_A FKBP-type peptidyl-prolyl CIS-trans isomerase FKP; chaperone, peptidyl-prolyl isomerase, heat shock protein, FK family; HET: MSE; 1.97A {Escherichia coli} SCOP: d.26.1.1 PDB: 1q6i_A* 1q6u_A Length = 224

 Score = 55.9 bits (135), Expect = 2e-09
 Identities = 28/104 (26%), Positives = 51/104 (49%), Gaps = 7/104 (6%)

Query: 57  QIIKEGHGQKPSKYSTCFLHYRAWAESTRHKFDDTWLEQQPLEMVLGKEKKEMTGLAIGV 116
           Q+++ G G+ P    T  ++Y+      + +FD+++   +PL   L      + G   G+
Sbjct: 126 QVVEAGKGEAPKDSDTVVVNYKGTLIDGK-EFDNSYTRGEPLSFRLD---GVIPGWTEGL 181

Query: 117 SSMKAGEHALLHVGWELGYGKEGSFSFPNVSPMADLVYEVVLIG 160
            ++K G    L +  EL YGK G    P + P + LV++V L+ 
Sbjct: 182 KNIKKGGKIKLVIPPELAYGKAGV---PGIPPNSTLVFDVELLD 222

>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus} Length = 217

 Score = 55.2 bits (134), Expect = 3e-09
 Identities = 16/110 (14%), Positives = 32/110 (29%), Gaps = 18/110 (16%)

Query: 189 GNALFKEEKLEEAMQQYEMAIAYMGDDFMFQLFGKYRDMALAVKNPCHLNMAACLLKLKR 248
           G       + ++A    + A+A   +D                       +A   L + R
Sbjct: 125 GLVYALLGERDKAEASLKQALAL--EDT-----------PEI-----RSALAELYLSMGR 166

Query: 249 YEEAIGQCSLVLGEDENNVKALFRRGKARAELGQTDAAREDFLKAGKFAP 298
            +EA+ Q +  L +   ++    R   A    G+ + A            
Sbjct: 167 LDEALAQYAKALEQAPKDLDLRVRYASALLLKGKAEEAARAAALEHHHHH 216

>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus} Length = 217

 Score = 48.7 bits (117), Expect = 6e-07
 Identities = 22/141 (15%), Positives = 40/141 (28%), Gaps = 31/141 (21%)

Query: 189 GNALFKEEKLEEAMQQYEMAI--------AY--MG---------DDFMFQLFGKYR---- 225
                K   +  A++  +  +         Y  +           +   +  G       
Sbjct: 46  ARTQLKLGLVNPALENGKTLVARTPRYLGGYMVLSEAYVALYRQAEDRERGKGYLEQALS 105

Query: 226 --DMALAVKNP----CHLNMAACLLKLKRYEEAIGQCSLVLGEDENNVKALFRRGKARAE 279
               A  V NP     HL        L   ++A       L   E+  +      +    
Sbjct: 106 VLKDAERV-NPRYAPLHLQRGLVYALLGERDKAEASLKQAL-ALEDTPEIRSALAELYLS 163

Query: 280 LGQTDAAREDFLKAGKFAPED 300
           +G+ D A   + KA + AP+D
Sbjct: 164 MGRLDEALAQYAKALEQAPKD 184

>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus} Length = 217

 Score = 43.7 bits (104), Expect = 3e-05
 Identities = 17/127 (13%), Positives = 31/127 (24%), Gaps = 36/127 (28%)

Query: 189 GNALFKEEKLEEAMQQYEMAIAYMGDDFMFQLFGKYRDMALAVKNP----CHLNMAACLL 244
           G  L+   + + A+  +E A+                       NP        +A   L
Sbjct: 12  GVQLYALGRYDAALTLFERALKE---------------------NPQDPEALYWLARTQL 50

Query: 245 KLKRYEEAIGQCSLVLGEDENNVKALFRRGKA-----------RAELGQTDAAREDFLKA 293
           KL     A+     ++      +       +A               G  + A      A
Sbjct: 51  KLGLVNPALENGKTLVARTPRYLGGYMVLSEAYVALYRQAEDRERGKGYLEQALSVLKDA 110

Query: 294 GKFAPED 300
            +  P  
Sbjct: 111 ERVNPRY 117

>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus} Length = 217

 Score = 43.3 bits (103), Expect = 3e-05
 Identities = 14/58 (24%), Positives = 26/58 (44%)

Query: 236 HLNMAACLLKLKRYEEAIGQCSLVLGEDENNVKALFRRGKARAELGQTDAAREDFLKA 293
            L +   L  L RY+ A+      L E+  + +AL+   + + +LG  + A E+    
Sbjct: 8   PLRLGVQLYALGRYDAALTLFERALKENPQDPEALYWLARTQLKLGLVNPALENGKTL 65

>2y78_A Peptidyl-prolyl CIS-trans isomerase; MIP, ppiase, virulence; HET: SO4 GOL; 0.91A {Burkholderia pseudomallei} PDB: 2ke0_A 2ko7_A* 2l2s_A* 4dz2_A* 4dz3_A* Length = 133

 Score = 53.0 bits (128), Expect = 5e-09
 Identities = 35/113 (30%), Positives = 48/113 (42%), Gaps = 16/113 (14%)

Query: 54  VTKQIIKEGHGQKPSKYSTCFLHYRAWAESTRHKFDDTWLEQQPLEMVLGKEKKEMTGLA 113
           +  + + EG G +     T  +HY  W    + KFD +     P   VLG       G+ 
Sbjct: 30  LKYEDLTEGSGAEARAGQTVSVHYTGWLTDGQ-KFDSSKDRNDPFAFVLGG------GMV 82

Query: 114 I-----GVSSMKAGEHALLHVGWELGYGKEGSFSFPNV-SPMADLVYEVVLIG 160
           I     GV  MK G    L +  +LGYG  G+     V  P A LV+EV L+ 
Sbjct: 83  IKGWDEGVQGMKVGGVRRLTIPPQLGYGARGA---GGVIPPNATLVFEVELLD 132

>3uf8_A Ubiquitin-like protein SMT3, peptidyl-prolyl CIS- isomerase; ssgcid, seattle structural genomics center for in disease; HET: FK5; 1.50A {Burkholderia pseudomallei} PDB: 4ggq_C* 3vaw_A* 3uqa_A* 4g50_A* 4fn2_A* 3uqb_A* 1euv_B 3v60_A 3v61_A 3v62_A* Length = 209

 Score = 54.4 bits (131), Expect = 7e-09
 Identities = 37/143 (25%), Positives = 54/143 (37%), Gaps = 14/143 (9%)

Query: 23  TEDAAFVRGEPPQDGDGPPKVDSEVEVLHEKVTKQIIKEGHGQKPSKYSTCFLHYRAWAE 82
           T +   +      +        S V      +  + + EG G +     T  +HY  W  
Sbjct: 75  TPEDLDMEDNDIIEAHREQIGGSTVVTTESGLKYEDLTEGSGAEARAGQTVSVHYTGWLT 134

Query: 83  STRHKFDDTWLEQQPLEMVLGKEKKEMTGLAI-----GVSSMKAGEHALLHVGWELGYGK 137
             + KFD +     P   VLG       G+ I     GV  MK G    L +  +LGYG 
Sbjct: 135 DGQ-KFDSSKDRNDPFAFVLGG------GMVIKGWDEGVQGMKVGGVRRLTIPPQLGYGA 187

Query: 138 EGSFSFPNVSPMADLVYEVVLIG 160
            G  +   + P A LV+EV L+ 
Sbjct: 188 RG--AAGVIPPNATLVFEVELLD 208

>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A Length = 136

 Score = 52.8 bits (128), Expect = 7e-09
 Identities = 33/125 (26%), Positives = 52/125 (41%), Gaps = 23/125 (18%)

Query: 189 GNALFKEEKLEEAMQQYEMAI--------AY--MGDDFMFQLFGKYR------DMALAVK 232
           GNA +K+   +EA++ Y+ A+        A+  +G+ +  Q  G Y         AL + 
Sbjct: 8   GNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQ--GDYDEAIEYYQKALELD 65

Query: 233 NP----CHLNMAACLLKLKRYEEAIGQCSLVLGEDENNVKALFRRGKARAELGQTDAARE 288
            P       N+     K   Y+EAI      L  D  + +A +  G A  + G  D A E
Sbjct: 66  -PRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIE 124

Query: 289 DFLKA 293
            + KA
Sbjct: 125 YYQKA 129

>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A Length = 136

 Score = 38.9 bits (92), Expect = 4e-04
 Identities = 22/93 (23%), Positives = 36/93 (38%), Gaps = 10/93 (10%)

Query: 236 HLNMAACLLKLKRYEEAIGQCSLVLGEDENNVKALFRRGKARAELGQTDAAREDFLKAGK 295
             N+     K   Y+EAI      L  D  + +A +  G A  + G  D A E + KA +
Sbjct: 4   WYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALE 63

Query: 296 FAPED------KSIARELRLLAEHEKAV--YKK 320
             P           A       ++++A+  Y+K
Sbjct: 64  LDPRSAEAWYNLGNA--YYKQGDYDEAIEYYQK 94

>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A Length = 125

 Score = 52.0 bits (126), Expect = 1e-08
 Identities = 28/109 (25%), Positives = 42/109 (38%), Gaps = 25/109 (22%)

Query: 189 GNALFKEEKLEEAMQQYEMAIAYMGDDFMFQLFGKYRDMALAVKNP----CHLNMAACLL 244
           GNA +K+   +EA++ Y+ A+                       +P       N+     
Sbjct: 16  GNAYYKQGDYDEAIEYYQKALEL---------------------DPNNAEAWYNLGNAYY 54

Query: 245 KLKRYEEAIGQCSLVLGEDENNVKALFRRGKARAELGQTDAAREDFLKA 293
           K   Y+EAI      L  D NN +A +  G A  + G  D A E + KA
Sbjct: 55  KQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKA 103

>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A Length = 125

 Score = 38.1 bits (90), Expect = 7e-04
 Identities = 19/58 (32%), Positives = 25/58 (43%)

Query: 236 HLNMAACLLKLKRYEEAIGQCSLVLGEDENNVKALFRRGKARAELGQTDAAREDFLKA 293
             N+     K   Y+EAI      L  D NN +A +  G A  + G  D A E + KA
Sbjct: 12  WYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKA 69

>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A* Length = 148

 Score = 52.2 bits (125), Expect = 1e-08
 Identities = 21/136 (15%), Positives = 38/136 (27%), Gaps = 18/136 (13%)

Query: 189 GNALFKEEKLEEAMQQYEMAIAYMGDDFMFQLFGKYRDMALAVKNPCHLNMAACLLKLKR 248
               ++    E+A   ++        D  F                  L + AC   + +
Sbjct: 28  AFNQYQSGXYEDAHXVFQALCVLDHYDSRF-----------------FLGLGACRQAMGQ 70

Query: 249 YEEAIGQCSLVLGEDENNVKALFRRGKARAELGQTDAAREDFLKAGKFAPEDKSIARELR 308
           Y+ AI   S     D    +  F   +   + G+   A      A +    +     EL 
Sbjct: 71  YDLAIHSYSYGAVMDIXEPRFPFHAAECLLQXGELAEAESGLFLAQELIA-NXPEFXELS 129

Query: 309 LLAEHEKAVYKKQKEI 324
                     K +KE+
Sbjct: 130 TRVSSMLEAIKLKKEM 145

>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A* Length = 148

 Score = 43.0 bits (101), Expect = 2e-05
 Identities = 11/63 (17%), Positives = 21/63 (33%)

Query: 238 NMAACLLKLKRYEEAIGQCSLVLGEDENNVKALFRRGKARAELGQTDAAREDFLKAGKFA 297
           ++A    +   YE+A      +   D  + +     G  R  +GQ D A   +       
Sbjct: 26  SLAFNQYQSGXYEDAHXVFQALCVLDHYDSRFFLGLGACRQAMGQYDLAIHSYSYGAVMD 85

Query: 298 PED 300
             +
Sbjct: 86  IXE 88

>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans} Length = 117

 Score = 51.3 bits (123), Expect = 2e-08
 Identities = 20/120 (16%), Positives = 40/120 (33%), Gaps = 14/120 (11%)

Query: 197 KLEEAMQQYEMAIAYMGDDFMFQLFGKYRDMALAVKNPCHLNMAACLLKLKRYEEAIGQC 256
              +A+  YE AIA              +D+A       +L + +    L  Y +A    
Sbjct: 5   LEAQAVPYYEKAIASGLQG---------KDLAEC-----YLGLGSTFRTLGEYRKAEAVL 50

Query: 257 SLVLGEDENNVKALFRRGKARAELGQTDAAREDFLKAGKFAPEDKSIARELRLLAEHEKA 316
           +  + +  N+             LG+ +   E  LK      +D++I    + +  +   
Sbjct: 51  ANGVKQFPNHQALRVFYAMVLYNLGRYEQGVELLLKIIAETSDDETIQSYKQAILFYADK 110

>1jvw_A Macrophage infectivity potentiator; chagas disease, X-RAY rotamase, isomeras; 1.70A {Trypanosoma cruzi} SCOP: d.26.1.1 Length = 167

 Score = 52.4 bits (126), Expect = 2e-08
 Identities = 30/132 (22%), Positives = 52/132 (39%), Gaps = 7/132 (5%)

Query: 57  QIIKEGHGQK-PSKYSTCFLHYRAWAESTRHKFDDTWLEQQPLEMVLGKEKKEMTGLAIG 115
           Q I  G G++ P+    C +HY          FD +    +P      +  K   G    
Sbjct: 42  QRIARGSGKRAPAIDDKCEVHYTGRLRDGT-VFDSSRERGKPTTFRPNEVIK---GWTEA 97

Query: 116 VSSMKAGEHALLHVGWELGYGKEGSFSFPNVSPMADLVYEVVLIGFDETKEGKARSDMTV 175
           +  M+ G+   L + ++L YG  G      + P + L ++V LI   +  +G+   ++  
Sbjct: 98  LQLMREGDRWRLFIPYDLAYGVTG--GGGMIPPYSPLEFDVELISIKDGGKGRTAEEVDE 155

Query: 176 EERIGAADRRKM 187
             R    DR  M
Sbjct: 156 ILRKAEEDREDM 167

>3ugm_A TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xanthomonas oryzae} Length = 1047

 Score = 55.4 bits (133), Expect = 2e-08
 Identities = 13/112 (11%), Positives = 26/112 (23%), Gaps = 17/112 (15%)

Query: 189 GNALFKEEKLEEAMQQYEMAIAYMGDDFMFQLFGKYRDMALAVKNPCHLNMAACLLKLKR 248
           G      E ++  +     A     D              +A       +       L+ 
Sbjct: 301 GGGKQALETVQRLLPVLCQAHGLTPDQ------------VVA-----IASHDGGKQALET 343

Query: 249 YEEAIGQCSLVLGEDENNVKALFRRGKARAELGQTDAAREDFLKAGKFAPED 300
            +  +       G   + V A+   G  +  L           +A    P+ 
Sbjct: 344 VQRLLPVLCQAHGLTPDQVVAIASNGGGKQALETVQRLLPVLCQAHGLTPDQ 395

>3ugm_A TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xanthomonas oryzae} Length = 1047

 Score = 55.4 bits (133), Expect = 2e-08
 Identities = 14/146 (9%), Positives = 33/146 (22%), Gaps = 18/146 (12%)

Query: 189 GNALFKEEKLEEAMQQYEMAIAYMGDDFMFQLFGKYRDMALAVKNPCHLNMAACLLKLKR 248
                  E ++  +     A     D              +A       +       L+ 
Sbjct: 267 IGGKQALETVQRLLPVLCQAHGLTPDQ------------VVA-----IASHGGGKQALET 309

Query: 249 YEEAIGQCSLVLGEDENNVKALFRRGKARAELGQTDAAREDFLKAGKFAPEDKSIARELR 308
            +  +       G   + V A+      +  L           +A    P+   +A    
Sbjct: 310 VQRLLPVLCQAHGLTPDQVVAIASHDGGKQALETVQRLLPVLCQAHGLTPDQ-VVAIASN 368

Query: 309 LLAEHEKAVYKKQKEIYKGIFGPRPE 334
              +      ++   +     G  P+
Sbjct: 369 GGGKQALETVQRLLPVLCQAHGLTPD 394

>3ugm_A TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xanthomonas oryzae} Length = 1047

 Score = 54.7 bits (131), Expect = 2e-08
 Identities = 13/150 (8%), Positives = 31/150 (20%), Gaps = 21/150 (14%)

Query: 189 GNALFKEEKLEEAMQQYEMAI--------AYMGDDFMFQLFGKYR------DMALAVK-- 232
                    ++  +     A         A   +    Q     +        A  +   
Sbjct: 504 IGGKQALATVQRLLPVLCQAHGLTPDQVVAIASNGGGKQALETVQRLLPVLCQAHGLTPD 563

Query: 233 -NPCHLNMAACLLKLKRYEEAIGQCSLVLGEDENNVKALFRRGKARAELGQTDAAREDFL 291
                 +       L+  +  +       G  +  V A+      +  L           
Sbjct: 564 QVVAIASNGGGKQALETVQRLLPVLCQAHGLTQVQVVAIASNIGGKQALETVQRLLPVLC 623

Query: 292 KAGKFAPED----KSIARELRLLAEHEKAV 317
           +A    P       S     + L   ++ +
Sbjct: 624 QAHGLTPAQVVAIASHDGGKQALETVQRLL 653

>3ugm_A TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xanthomonas oryzae} Length = 1047

 Score = 54.7 bits (131), Expect = 3e-08
 Identities = 14/146 (9%), Positives = 31/146 (21%), Gaps = 18/146 (12%)

Query: 189 GNALFKEEKLEEAMQQYEMAIAYMGDDFMFQLFGKYRDMALAVKNPCHLNMAACLLKLKR 248
           G      E ++  +     A                    +A       +       L+ 
Sbjct: 572 GGGKQALETVQRLLPVLCQAHGLTQVQ------------VVA-----IASNIGGKQALET 614

Query: 249 YEEAIGQCSLVLGEDENNVKALFRRGKARAELGQTDAAREDFLKAGKFAPEDKSIARELR 308
            +  +       G     V A+      +  L           +A    P+   +A    
Sbjct: 615 VQRLLPVLCQAHGLTPAQVVAIASHDGGKQALETVQRLLPVLCQAHGLTPDQ-VVAIASN 673

Query: 309 LLAEHEKAVYKKQKEIYKGIFGPRPE 334
              +      ++   +     G   E
Sbjct: 674 GGGKQALETVQRLLPVLCQAHGLTQE 699

>3ugm_A TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xanthomonas oryzae} Length = 1047

 Score = 53.9 bits (129), Expect = 5e-08
 Identities = 15/166 (9%), Positives = 35/166 (21%), Gaps = 18/166 (10%)

Query: 189 GNALFKEEKLEEAMQQYEMAI--------AYMGDDFMFQLFGKYR------DMALAVKN- 233
                  E ++  +     A         A   +    Q     +        A  +   
Sbjct: 640 DGGKQALETVQRLLPVLCQAHGLTPDQVVAIASNGGGKQALETVQRLLPVLCQAHGLTQE 699

Query: 234 --PCHLNMAACLLKLKRYEEAIGQCSLVLGEDENNVKALFRRGKARAELGQTDAAREDFL 291
                 +       L+  +  +       G   + V A+   G  +  L           
Sbjct: 700 QVVAIASNNGGKQALETVQRLLPVLCQAHGLTPDQVVAIASNGGGKQALETVQRLLPVLC 759

Query: 292 KAGKFAPEDKSIARELRLLAEHEKAVYKKQKEIYKGIFGPRPEPKQ 337
           +A    P    +A    +  +      ++   +     G       
Sbjct: 760 QAHGLTPAQ-VVAIASNIGGKQALETVQRLLPVLCQDHGLTLAQVV 804

>3ugm_A TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xanthomonas oryzae} Length = 1047

 Score = 53.5 bits (128), Expect = 7e-08
 Identities = 11/112 (9%), Positives = 23/112 (20%), Gaps = 17/112 (15%)

Query: 189 GNALFKEEKLEEAMQQYEMAIAYMGDDFMFQLFGKYRDMALAVKNPCHLNMAACLLKLKR 248
                  E ++  +     A                    +A       +       L+ 
Sbjct: 606 IGGKQALETVQRLLPVLCQAHGLT------------PAQVVA-----IASHDGGKQALET 648

Query: 249 YEEAIGQCSLVLGEDENNVKALFRRGKARAELGQTDAAREDFLKAGKFAPED 300
            +  +       G   + V A+   G  +  L           +A     E 
Sbjct: 649 VQRLLPVLCQAHGLTPDQVVAIASNGGGKQALETVQRLLPVLCQAHGLTQEQ 700

>3ugm_A TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xanthomonas oryzae} Length = 1047

 Score = 53.1 bits (127), Expect = 8e-08
 Identities = 15/164 (9%), Positives = 33/164 (20%), Gaps = 18/164 (10%)

Query: 189 GNALFKEEKLEEAMQQYEMAI--------AYMGDDFMFQLFGKYRDM------ALAVKNP 234
                  E ++  +               A    D   Q     + +      A  +   
Sbjct: 436 DGGKQALETVQRLLPVLCQTHGLTPAQVVAIASHDGGKQALETVQQLLPVLCQAHGLTPD 495

Query: 235 C---HLNMAACLLKLKRYEEAIGQCSLVLGEDENNVKALFRRGKARAELGQTDAAREDFL 291
                 +       L   +  +       G   + V A+   G  +  L           
Sbjct: 496 QVVAIASNIGGKQALATVQRLLPVLCQAHGLTPDQVVAIASNGGGKQALETVQRLLPVLC 555

Query: 292 KAGKFAPEDKSIARELRLLAEHEKAVYKKQKEIYKGIFGPRPEP 335
           +A    P+    A       +      ++   +     G     
Sbjct: 556 QAHGLTPDQVV-AIASNGGGKQALETVQRLLPVLCQAHGLTQVQ 598

>3ugm_A TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xanthomonas oryzae} Length = 1047

 Score = 53.1 bits (127), Expect = 9e-08
 Identities = 12/112 (10%), Positives = 25/112 (22%), Gaps = 17/112 (15%)

Query: 189 GNALFKEEKLEEAMQQYEMAIAYMGDDFMFQLFGKYRDMALAVKNPCHLNMAACLLKLKR 248
                  E ++  +     A     D              +A       +       L+ 
Sbjct: 233 DGGKQALETMQRLLPVLCQAHGLPPDQ------------VVA-----IASNIGGKQALET 275

Query: 249 YEEAIGQCSLVLGEDENNVKALFRRGKARAELGQTDAAREDFLKAGKFAPED 300
            +  +       G   + V A+   G  +  L           +A    P+ 
Sbjct: 276 VQRLLPVLCQAHGLTPDQVVAIASHGGGKQALETVQRLLPVLCQAHGLTPDQ 327

>3ugm_A TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xanthomonas oryzae} Length = 1047

 Score = 52.7 bits (126), Expect = 1e-07
 Identities = 12/142 (8%), Positives = 31/142 (21%), Gaps = 23/142 (16%)

Query: 189 GNALFKEEKLEEAMQQYEMAIAYMGDDFMFQLFGKYRDMALAVKNPCHLNMAACLLKLKR 248
                  E ++  +     A                    +A       +       L+ 
Sbjct: 199 NGGKQALETVQRLLPVLCQAHGLTPAQ------------VVA-----IASHDGGKQALET 241

Query: 249 YEEAIGQCSLVLGEDENNVKALFRRGKARAELGQTDAAREDFLKAGKFAPED----KSIA 304
            +  +       G   + V A+      +  L           +A    P+      S  
Sbjct: 242 MQRLLPVLCQAHGLPPDQVVAIASNIGGKQALETVQRLLPVLCQAHGLTPDQVVAIASHG 301

Query: 305 RELRLLAEHEKAV--YKKQKEI 324
              + L   ++ +    +   +
Sbjct: 302 GGKQALETVQRLLPVLCQAHGL 323

>3ugm_A TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xanthomonas oryzae} Length = 1047

 Score = 46.6 bits (110), Expect = 1e-05
 Identities = 13/122 (10%), Positives = 24/122 (19%), Gaps = 18/122 (14%)

Query: 189 GNALFKEEKLEEAMQQYEMAIAYMGDDFM-------FQLFGKYRDMALAVKNPC------ 235
           G      E ++  +     A     D  +        Q         L V          
Sbjct: 369 GGGKQALETVQRLLPVLCQAHGLTPDQVVAIASNGGKQALETV-QRLLPVLCQAHGLTPD 427

Query: 236 ----HLNMAACLLKLKRYEEAIGQCSLVLGEDENNVKALFRRGKARAELGQTDAAREDFL 291
                 +       L+  +  +       G     V A+      +  L           
Sbjct: 428 QVVAIASHDGGKQALETVQRLLPVLCQTHGLTPAQVVAIASHDGGKQALETVQQLLPVLC 487

Query: 292 KA 293
           +A
Sbjct: 488 QA 489

>3ugm_A TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xanthomonas oryzae} Length = 1047

 Score = 46.2 bits (109), Expect = 1e-05
 Identities = 20/159 (12%), Positives = 37/159 (23%), Gaps = 14/159 (8%)

Query: 155 EVVLIGFDETKEGKARSDMTVEERIGAADRRKMDGNALFKEEK-LEEAMQQYE----MAI 209
             V + +         +       +G          AL  +   L     Q +    + I
Sbjct: 102 GTVAVTYQHIITALPEATHEDIVGVGKQWSGARALEALLTDAGELRGPPLQLDTGQLVKI 161

Query: 210 AYMGDDFMFQLFGKYRDMALAVK----NP----CHLNMAACLLKLKRYEEAIGQCSLVLG 261
           A  G     +     R+ AL        P       +       L+  +  +       G
Sbjct: 162 AKRGGVTAMEAVHASRN-ALTGAPLNLTPAQVVAIASNNGGKQALETVQRLLPVLCQAHG 220

Query: 262 EDENNVKALFRRGKARAELGQTDAAREDFLKAGKFAPED 300
                V A+      +  L           +A    P+ 
Sbjct: 221 LTPAQVVAIASHDGGKQALETMQRLLPVLCQAHGLPPDQ 259

>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A Length = 327

 Score = 54.2 bits (131), Expect = 2e-08
 Identities = 18/123 (14%), Positives = 39/123 (31%), Gaps = 19/123 (15%)

Query: 189 GNALFKEEKLEEAMQQYEMAIAYMGDDF--------MFQLFGKYR------DMALAVKNP 234
                   +  E       A+    +D         ++ L   Y         A+ +  P
Sbjct: 145 DFFFAAPNEYRECRTLLHAALEMNPNDAQLHASLGVLYNLSNNYDSAAANLRRAVEL-RP 203

Query: 235 ----CHLNMAACLLKLKRYEEAIGQCSLVLGEDENNVKALFRRGKARAELGQTDAAREDF 290
                   + A L    R +EA+   +  L  +   V+ ++    + + + Q D A +  
Sbjct: 204 DDAQLWNKLGATLANGNRPQEALDAYNRALDINPGYVRVMYNMAVSYSNMSQYDLAAKQL 263

Query: 291 LKA 293
           ++A
Sbjct: 264 VRA 266

>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A Length = 327

 Score = 52.3 bits (126), Expect = 9e-08
 Identities = 14/112 (12%), Positives = 29/112 (25%), Gaps = 2/112 (1%)

Query: 189 GNALFKEEKLEEAMQQYEMAIAYMGDDFMFQLFGKYRDMALAVKNPCHLNMAACLLKLKR 248
             +   E     A+      +         QL        + + +    +          
Sbjct: 96  AVSHTNEHNANAALASLRAWLLSQPQYE--QLGSVNLQADVDIDDLNVQSEDFFFAAPNE 153

Query: 249 YEEAIGQCSLVLGEDENNVKALFRRGKARAELGQTDAAREDFLKAGKFAPED 300
           Y E        L  + N+ +     G         D+A  +  +A +  P+D
Sbjct: 154 YRECRTLLHAALEMNPNDAQLHASLGVLYNLSNNYDSAAANLRRAVELRPDD 205

>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A Length = 327

 Score = 51.9 bits (125), Expect = 1e-07
 Identities = 12/105 (11%), Positives = 27/105 (25%), Gaps = 17/105 (16%)

Query: 189 GNALFKEEKLEEAMQQYEMAIAYMGDDFMFQLFGKYRDMALAVKNPCHLNMAACLLKLKR 248
           G ++ K   L EA   +E            Q   +  +           ++     + ++
Sbjct: 28  GLSMLKLANLAEAALAFEAVC---------QAAPEREE--------AWRSLGLTQAENEK 70

Query: 249 YEEAIGQCSLVLGEDENNVKALFRRGKARAELGQTDAAREDFLKA 293
              AI   +     D  ++        +       +AA       
Sbjct: 71  DGLAIIALNHARMLDPKDIAVHAALAVSHTNEHNANAALASLRAW 115

>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A Length = 327

 Score = 48.8 bits (117), Expect = 1e-06
 Identities = 16/78 (20%), Positives = 22/78 (28%), Gaps = 5/78 (6%)

Query: 228 ALAVKNP-----CHLNMAACLLKLKRYEEAIGQCSLVLGEDENNVKALFRRGKARAELGQ 282
                NP       +     +LKL    EA      V        +A    G  +AE  +
Sbjct: 11  PFEANNPYMYHENPMEEGLSMLKLANLAEAALAFEAVCQAAPEREEAWRSLGLTQAENEK 70

Query: 283 TDAAREDFLKAGKFAPED 300
              A      A    P+D
Sbjct: 71  DGLAIIALNHARMLDPKD 88

>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A Length = 327

 Score = 42.7 bits (101), Expect = 1e-04
 Identities = 14/95 (14%), Positives = 23/95 (24%), Gaps = 25/95 (26%)

Query: 189 GNALFKEEKLEEAMQQYEMAIAYMGDDFMFQLFGKYRDMALAVKNP----CHLNMAACLL 244
           G  L    + +EA+  Y  A+                       NP       NMA    
Sbjct: 213 GATLANGNRPQEALDAYNRALDI---------------------NPGYVRVMYNMAVSYS 251

Query: 245 KLKRYEEAIGQCSLVLGEDENNVKALFRRGKARAE 279
            + +Y+ A  Q    +              +    
Sbjct: 252 NMSQYDLAAKQLVRAIYMQVGGTTPTGEASREATR 286

>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A* Length = 568

 Score = 54.9 bits (132), Expect = 2e-08
 Identities = 16/119 (13%), Positives = 30/119 (25%), Gaps = 17/119 (14%)

Query: 189 GNALFKEEKLEEAMQQYEMAIAYMGDDFMFQLFGKYRDMALAVKNPCHLNMAACLLKLKR 248
            +A              +  +A                            +       +R
Sbjct: 30  ADAELGMGDTTAGEMAVQRGLALHPGHP-----------------EAVARLGRVRWTQQR 72

Query: 249 YEEAIGQCSLVLGEDENNVKALFRRGKARAELGQTDAAREDFLKAGKFAPEDKSIAREL 307
           + EA             +       G A  + GQ +AA   + +A +  PE+  I  +L
Sbjct: 73  HAEAAVLLQQASDAAPEHPGIALWLGHALEDAGQAEAAAAAYTRAHQLLPEEPYITAQL 131

>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A* Length = 568

 Score = 51.0 bits (122), Expect = 3e-07
 Identities = 21/129 (16%), Positives = 35/129 (27%), Gaps = 23/129 (17%)

Query: 198 LEEAMQQYEMAIAYMGDDFMFQLFGKYRDMALAVKNPCHLNMAACLLKLKRYEEAIGQCS 257
               + Q   A+ +   DF                    L +A   L +           
Sbjct: 5   GPRELLQLRAAVRHRPQDF-----------------VAWLMLADAELGMGDTTAGEMAVQ 47

Query: 258 LVLGEDENNVKALFRRGKARAELGQTDAAREDFLKAGKFAPED----KSIARELRLLAEH 313
             L     + +A+ R G+ R    +   A     +A   APE       +   L    + 
Sbjct: 48  RGLALHPGHPEAVARLGRVRWTQQRHAEAAVLLQQASDAAPEHPGIALWLGHALEDAGQA 107

Query: 314 EKAV--YKK 320
           E A   Y +
Sbjct: 108 EAAAAAYTR 116

>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A* Length = 568

 Score = 40.2 bits (94), Expect = 8e-04
 Identities = 8/69 (11%), Positives = 14/69 (20%), Gaps = 3/69 (4%)

Query: 248 RYEEAIGQCSLVLGEDENNVKALFRRGKARAELGQTDAAREDFLKAGKFAPEDKSIAREL 307
                + Q    +     +  A      A   +G T A      +     P        +
Sbjct: 4   DGPRELLQLRAAVRHRPQDFVAWLMLADAELGMGDTTAGEMAVQRGLALHPGH---PEAV 60

Query: 308 RLLAEHEKA 316
             L      
Sbjct: 61  ARLGRVRWT 69

>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus} Length = 291

 Score = 53.6 bits (128), Expect = 2e-08
 Identities = 24/175 (13%), Positives = 52/175 (29%), Gaps = 20/175 (11%)

Query: 165 KEGKARSDMTVEERIGAADRRKMDGNALFKEEKLEEAMQQYEMAIAYMGDDFMFQLFGKY 224
            +    + +    +  + +   M    L K ++L+ A ++ +       D  + QL   +
Sbjct: 113 YDQNPDAALRTLHQGDSLECMAMTVQILLKLDRLDLARKELKKMQDQDEDATLTQLATAW 172

Query: 225 RDMALAVKN-------------------PCHLNMAACLLKLKRYEEAIGQCSLVLGEDEN 265
             +A   +                          AAC +   R+E A G     L +D  
Sbjct: 173 VSLAAGGEKLQDAYYIFQEMADKCSPTLLLLNGQAACHMAQGRWEAAEGVLQEALDKDSG 232

Query: 266 NVKALFRRGKARAELGQTDAAREDFL-KAGKFAPEDKSIARELRLLAEHEKAVYK 319
           + + L         LG+       +L +          I        + ++ V +
Sbjct: 233 HPETLINLVVLSQHLGKPPEVTNRYLSQLKDAHRSHPFIKEYRAKENDFDRLVLQ 287

>1fd9_A Protein (macrophage infectivity potentiator prote; FKBP domain, long alpha helix, dimerisation VIA helical INTE isomerase; 2.41A {Legionella pneumophila} SCOP: d.26.1.1 PDB: 2uz5_A 2vcd_A* Length = 213

 Score = 52.0 bits (125), Expect = 4e-08
 Identities = 25/105 (23%), Positives = 42/105 (40%), Gaps = 8/105 (7%)

Query: 57  QIIKEGHGQKPSKYSTCFLHYRAW-AESTRHKFDDTWLEQQPLEMVLGKEKKEMTGLAIG 115
           ++I  G+G KP K  T  + Y     + T   FD T    +P    +    + + G    
Sbjct: 111 KVINSGNGVKPGKSDTVTVEYTGRLIDGTV--FDSTEKTGKPATFQVS---QVIPGWTEA 165

Query: 116 VSSMKAGEHALLHVGWELGYGKEGSFSFPNVSPMADLVYEVVLIG 160
           +  M AG    ++V   L YG         + P   L++++ LI 
Sbjct: 166 LQLMPAGSTWEIYVPSGLAYGPRS--VGGPIGPNETLIFKIHLIS 208

>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus} Length = 365

 Score = 53.1 bits (128), Expect = 4e-08
 Identities = 17/129 (13%), Positives = 31/129 (24%), Gaps = 25/129 (19%)

Query: 197 KLEEAMQQYEMAIAY----------MGDDFMFQLFGKYRDM----------ALAVKNP-- 234
           + E A    E    +          M          + ++               +NP  
Sbjct: 4   EFERAKAAVESDTEFWDKMQAEWEEMARRNWISENQEAQNQVTVSASEKGYYFHTENPFK 63

Query: 235 ---CHLNMAACLLKLKRYEEAIGQCSLVLGEDENNVKALFRRGKARAELGQTDAAREDFL 291
                       LK       I      + +D  + +A    G  +AE     AA     
Sbjct: 64  DWPGAFEEGLKRLKEGDLPVTILFMEAAILQDPGDAEAWQFLGITQAENENEQAAIVALQ 123

Query: 292 KAGKFAPED 300
           +  +  P +
Sbjct: 124 RCLELQPNN 132

>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus} Length = 365

 Score = 52.4 bits (126), Expect = 8e-08
 Identities = 18/105 (17%), Positives = 32/105 (30%), Gaps = 17/105 (16%)

Query: 189 GNALFKEEKLEEAMQQYEMAIAYMGDDFMFQLFGKYRDMALAVKNPCHLNMAACLLKLKR 248
           G       +   A+  +  A+    +D                       + A L    R
Sbjct: 220 GVLFHLSGEFNRAIDAFNAALTVRPED------------YSL-----WNRLGATLANGDR 262

Query: 249 YEEAIGQCSLVLGEDENNVKALFRRGKARAELGQTDAAREDFLKA 293
            EEA+   +  L      +++ +  G +   LG    A  +FL A
Sbjct: 263 SEEAVEAYTRALEIQPGFIRSRYNLGISCINLGAYREAVSNFLTA 307

>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus} Length = 365

 Score = 47.7 bits (114), Expect = 3e-06
 Identities = 12/150 (8%), Positives = 39/150 (26%), Gaps = 35/150 (23%)

Query: 189 GNALFKEEKLEEAMQQYEMAIAYMGDDFMFQLFGKYRDMALAVKNPCHLNMAACLLKLKR 248
           G    + E  + A+   +  +    ++                     + +A        
Sbjct: 106 GITQAENENEQAAIVALQRCLELQPNNL-----------------KALMALAVSYTNTSH 148

Query: 249 YEEAIGQCSLVLGEDENNVKALFRRG----------KARAELGQTDAAREDFLKAGKFAP 298
            ++A       + ++      +  +           K+  +    +  +E +L+A     
Sbjct: 149 QQDACEALKNWIKQNPKYKYLVKNKKGSPGLTRRMSKSPVDSSVLEGVKELYLEAAHQNG 208

Query: 299 EDK------SIARELRLLAEHEKAV--YKK 320
           +         +     L  E  +A+  +  
Sbjct: 209 DMIDPDLQTGLGVLFHLSGEFNRAIDAFNA 238

>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1 Length = 121

 Score = 50.1 bits (120), Expect = 5e-08
 Identities = 12/111 (10%), Positives = 27/111 (24%), Gaps = 17/111 (15%)

Query: 189 GNALFKEEKLEEAMQQYEMAIAYMGDDFMFQLFGKYRDMALAVKNPCHLNMAACLLKLKR 248
           G ++ K   L EA   +E       +                       ++     + ++
Sbjct: 24  GLSMLKLANLAEAALAFEAVCQKEPEREE-----------------AWRSLGLTQAENEK 66

Query: 249 YEEAIGQCSLVLGEDENNVKALFRRGKARAELGQTDAAREDFLKAGKFAPE 299
              AI   +     D  ++        +       +AA           P+
Sbjct: 67  DGLAIIALNHARMLDPKDIAVHAALAVSHTNEHNANAALASLRAWLLSQPQ 117

>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1 Length = 121

 Score = 47.1 bits (112), Expect = 6e-07
 Identities = 14/68 (20%), Positives = 23/68 (33%)

Query: 233 NPCHLNMAACLLKLKRYEEAIGQCSLVLGEDENNVKALFRRGKARAELGQTDAAREDFLK 292
           +   +     +LKL    EA      V  ++    +A    G  +AE  +   A      
Sbjct: 17  HENPMEEGLSMLKLANLAEAALAFEAVCQKEPEREEAWRSLGLTQAENEKDGLAIIALNH 76

Query: 293 AGKFAPED 300
           A    P+D
Sbjct: 77  ARMLDPKD 84

>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens} Length = 472

 Score = 53.4 bits (128), Expect = 6e-08
 Identities = 17/114 (14%), Positives = 37/114 (32%), Gaps = 2/114 (1%)

Query: 189 GNALFKEEKLEEAMQQYEMAIAYMGDDFM--FQLFGKYRDMALAVKNPCHLNMAACLLKL 246
                ++++ ++A++  + A+ Y+ ++     Q+   YR     V N     M      L
Sbjct: 254 AKFYRRKDEPDKAIELLKKALEYIPNNAYLHCQIGCCYRAKVFQVMNLRENGMYGKRKLL 313

Query: 247 KRYEEAIGQCSLVLGEDENNVKALFRRGKARAELGQTDAAREDFLKAGKFAPED 300
           +    A+         ++N  +         A   Q + A   F K        
Sbjct: 314 ELIGHAVAHLKKADEANDNLFRVCSILASLHALADQYEEAEYYFQKEFSKELTP 367

>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A Length = 368

 Score = 52.7 bits (127), Expect = 6e-08
 Identities = 18/113 (15%), Positives = 38/113 (33%), Gaps = 9/113 (7%)

Query: 195 EEKLEEAMQQYEMAIAYMGDDFMFQLFGKYRDMALAVK-------NPCHLNMAACLLKLK 247
           + +LEE  ++   A  ++ D     L     D     +       +P         L+  
Sbjct: 21  QAELEEMAKRDAEAHPWLSDYD--DLTSATYDKGYQFEEENPLRDHPQPFEEGLRRLQEG 78

Query: 248 RYEEAIGQCSLVLGEDENNVKALFRRGKARAELGQTDAAREDFLKAGKFAPED 300
               A+      + +D  +++A    G  +AE  Q   A     +  +  P++
Sbjct: 79  DLPNAVLLFEAAVQQDPKHMEAWQYLGTTQAENEQELLAISALRRCLELKPDN 131

>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A Length = 368

 Score = 50.8 bits (122), Expect = 3e-07
 Identities = 14/106 (13%), Positives = 31/106 (29%), Gaps = 15/106 (14%)

Query: 188 DGNALFKEEKLEEAMQQYEMAIAYMGDDFMFQLFGKYRDMALAVKNPCHLNMAACLLKLK 247
              +L  +    E  + +  A+         +L     D            +        
Sbjct: 187 ILGSLLSDSLFLEVKELFLAAV---------RLDPTSID-PDV-----QCGLGVLFNLSG 231

Query: 248 RYEEAIGQCSLVLGEDENNVKALFRRGKARAELGQTDAAREDFLKA 293
            Y++A+   +  L    N+     + G   A   Q++ A   + +A
Sbjct: 232 EYDKAVDCFTAALSVRPNDYLLWNKLGATLANGNQSEEAVAAYRRA 277

>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A Length = 368

 Score = 50.8 bits (122), Expect = 3e-07
 Identities = 18/125 (14%), Positives = 33/125 (26%), Gaps = 17/125 (13%)

Query: 189 GNALFKEEKLEEAMQQYEMAIAYMGDDFMFQLFGKYRDMALAVKNPCHLNMAACLLKLKR 248
           G    +E  L  A+  +E A+         Q   K+ +            +     + ++
Sbjct: 71  GLRRLQEGDLPNAVLLFEAAV---------QQDPKHME--------AWQYLGTTQAENEQ 113

Query: 249 YEEAIGQCSLVLGEDENNVKALFRRGKARAELGQTDAAREDFLKAGKFAPEDKSIARELR 308
              AI      L    +N  AL     +         A E      ++ P    +     
Sbjct: 114 ELLAISALRRCLELKPDNQTALMALAVSFTNESLQRQACEILRDWLRYTPAYAHLVTPAE 173

Query: 309 LLAEH 313
             A  
Sbjct: 174 EGAGG 178

>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A Length = 368

 Score = 45.0 bits (107), Expect = 2e-05
 Identities = 17/114 (14%), Positives = 29/114 (25%), Gaps = 4/114 (3%)

Query: 189 GNALFKEEKLEEAMQQYEMAIAYMGDDFMFQLFGKYRDMALAVKNPCHLNMAACLLKLKR 248
             +   E    +A +     + Y        L     + A          +   LL    
Sbjct: 139 AVSFTNESLQRQACEILRDWLRYTPAY--AHLVTPAEEGAGGAGLGPSKRILGSLLSDSL 196

Query: 249 YEEAIGQCSLVLGEDENNVKA--LFRRGKARAELGQTDAAREDFLKAGKFAPED 300
           + E        +  D  ++        G      G+ D A + F  A    P D
Sbjct: 197 FLEVKELFLAAVRLDPTSIDPDVQCGLGVLFNLSGEYDKAVDCFTAALSVRPND 250

>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A Length = 368

 Score = 42.7 bits (101), Expect = 1e-04
 Identities = 19/120 (15%), Positives = 30/120 (25%), Gaps = 36/120 (30%)

Query: 189 GNALFKEEKLEEAMQQYEMAIAYMGDDFMFQLFGKYRDMALAVKNP----CHLNMAACLL 244
           G  L    + EEA+  Y  A+                        P       N+    +
Sbjct: 258 GATLANGNQSEEAVAAYRRALEL---------------------QPGYIRSRYNLGISCI 296

Query: 245 KLKRYEEAIGQCSLVLGEDENNVKALFRR-----------GKARAELGQTDAAREDFLKA 293
            L  + EA+      L     +                    A + LGQ+DA      + 
Sbjct: 297 NLGAHREAVEHFLEALNMQRKSRGPRGEGGAMSENIWSTLRLALSMLGQSDAYGAADARD 356

>3oe2_A Peptidyl-prolyl CIS-trans isomerase; FKBP, ppiase, FK506; HET: TAR SRT; 1.60A {Pseudomonas syringae PV} Length = 219

 Score = 50.1 bits (120), Expect = 2e-07
 Identities = 24/107 (22%), Positives = 39/107 (36%), Gaps = 9/107 (8%)

Query: 57  QIIKEGHGQKPSKYSTCFLHYRAWAESTRHKFDDTWLEQQPLEMVLGKEKKEMTGLAIGV 116
             +  G G KP       + Y       +  FD +    QP    L      ++G    +
Sbjct: 122 TELTPGTGPKPDANGRVEVRYVGRLPDGK-IFDQS---TQPQWFRLD---SVISGWTSAL 174

Query: 117 SSMKAGEHALLHVGWELGYGKEGSFSFPNVSPMADLVYEVVLIGFDE 163
            +M  G    L +  +  YG EG  +   + P   LV+E+ LI   +
Sbjct: 175 QNMPTGAKWRLVIPSDQAYGAEG--AGDLIDPFTPLVFEIELIAVSQ 219

>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A Length = 100

 Score = 46.5 bits (111), Expect = 6e-07
 Identities = 15/73 (20%), Positives = 29/73 (39%), Gaps = 4/73 (5%)

Query: 231 VKNP----CHLNMAACLLKLKRYEEAIGQCSLVLGEDENNVKALFRRGKARAELGQTDAA 286
           +++P        +A   LK      A+     ++  D + V   +  GK    L +TD A
Sbjct: 1   MEDPEDPFTRYALAQEHLKHDNASRALALFEELVETDPDYVGTYYHLGKLYERLDRTDDA 60

Query: 287 REDFLKAGKFAPE 299
            + + +  + A E
Sbjct: 61  IDTYAQGIEVARE 73

>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A Length = 100

 Score = 38.0 bits (89), Expect = 5e-04
 Identities = 12/98 (12%), Positives = 28/98 (28%), Gaps = 19/98 (19%)

Query: 189 GNALFKEEKLEEAMQQYEMAIAYMGDDFMFQLFGKYRDMALAVKNPCHLNMAACLLKLKR 248
                K +    A+  +E  +                D         + ++     +L R
Sbjct: 14  AQEHLKHDNASRALALFEELVE------------TDPDYVGT-----YYHLGKLYERLDR 56

Query: 249 YEEAIGQC--SLVLGEDENNVKALFRRGKARAELGQTD 284
            ++AI      + +  +E   K L     A+ +    +
Sbjct: 57  TDDAIDTYAQGIEVAREEGTQKDLSELQDAKLKAEGLE 94

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 47.5 bits (112), Expect = 5e-06
 Identities = 66/438 (15%), Positives = 122/438 (27%), Gaps = 123/438 (28%)

Query: 15  EVGESEIVTED------AAFVRGEPPQDGDGPPKVDSEVEVLHEKVTKQIIKEGHGQKPS 68
           E GE +   +D       AFV      + D     D    +L ++    II        +
Sbjct: 10  ETGEHQYQYKDILSVFEDAFVD-----NFDCKDVQDMPKSILSKEEIDHIIMSKDAVSGT 64

Query: 69  KY-STCFLHYRAWAESTRHKF-------DDTWL-------EQQP-LEMVLGKEK------ 106
                  L  +   E    KF       +  +L       ++QP +   +  E+      
Sbjct: 65  LRLFWTLLSKQ---EEMVQKFVEEVLRINYKFLMSPIKTEQRQPSMMTRMYIEQRDRLYN 121

Query: 107 -------------KEMTGLAIGVSSMKAGEHALLHVGWELGYGK-----EGSFSFPNVSP 148
                        +    L   +  ++  ++ L+  G  LG GK     +   S+     
Sbjct: 122 DNQVFAKYNVSRLQPYLKLRQALLELRPAKNVLID-G-VLGSGKTWVALDVCLSYKVQCK 179

Query: 149 MADLVY----------EVVL-----IGFDETKEGKARSD--MTVEERIGAADRRKMDGNA 191
           M   ++          E VL     + +       +RSD    ++ RI +          
Sbjct: 180 MDFKIFWLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAEL---RR 236

Query: 192 LFKEEKLEEAM------QQYEMAIAYMGDDFMFQ---LFGKYRDM----ALAVKNPCHLN 238
           L K +  E  +      Q  +       + F      L    R       L+     H++
Sbjct: 237 LLKSKPYENCLLVLLNVQNAKAW-----NAFNLSCKILLTT-RFKQVTDFLSAATTTHIS 290

Query: 239 MAACLLKLKRYEEAIGQCSLVLGEDENNVKALFRRGKAR-----AELGQTDAAREDFLKA 293
           +    + L   +E        L     ++         R     AE  +   A  D  K 
Sbjct: 291 LDHHSMTLTP-DEVKSLLLKYLDCRPQDLPREVLTTNPRRLSIIAESIRDGLATWDNWKH 349

Query: 294 GKFAPEDKSIARELRLLAEHEKAVYKKQKEIYK--GIFGPRPE----PKQKKNWLIIFWQ 347
                    I   L +L   E       ++++    +F   P     P      L + W 
Sbjct: 350 VNCDKLTTIIESSLNVLEPAE------YRKMFDRLSVF---PPSAHIPTIL---LSLIWF 397

Query: 348 LL----VSLVLGLFKRKR 361
            +    V +V+    +  
Sbjct: 398 DVIKSDVMVVVNKLHKYS 415

>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli} Length = 177

 Score = 44.5 bits (105), Expect = 1e-05
 Identities = 14/127 (11%), Positives = 29/127 (22%), Gaps = 20/127 (15%)

Query: 189 GNALFKEEKLEEAMQQYEMAIAYMGDDFMFQLFGKYRDMALAVKNPCHLNMAACLLKL-- 246
           G     +     ++  Y  A+   G++                    +  +A  L     
Sbjct: 51  GEYYLWQNDYSNSLLAYRQALQLRGENAEL-----------------YAALATVLYYQAS 93

Query: 247 -KRYEEAIGQCSLVLGEDENNVKALFRRGKARAELGQTDAAREDFLKAGKFAPEDKSIAR 305
                +        L  D N + AL               A E + K         +  +
Sbjct: 94  QHMTAQTRAMIDKALALDSNEITALMLLASDAFMQANYAQAIELWQKVMDLNSPRINRTQ 153

Query: 306 ELRLLAE 312
            +  +  
Sbjct: 154 LVESINM 160

>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus} Length = 474

 Score = 45.8 bits (108), Expect = 1e-05
 Identities = 21/133 (15%), Positives = 40/133 (30%), Gaps = 21/133 (15%)

Query: 195 EEKLEEAMQQYEMAIAYMGDDFMFQLFGKYRDMALAVKNPCHLNMAACLLKLKRY-EEAI 253
           +E++E+ +QQ E  +     +                     +     L     Y  EA 
Sbjct: 81  QEEMEKTLQQMEEVLGSAQVEAQA-----------------LMLKGKALNVTPDYSPEAE 123

Query: 254 GQCSLVLGEDENNVKALFRRGKARAELGQTDAAREDFLKAGKFAPEDKS---IARELRLL 310
              S  +  +   V+A  + G+   + G   +A   F  A        S   ++  LR L
Sbjct: 124 VLLSKAVKLEPELVEAWNQLGEVYWKKGDVTSAHTCFSGALTHCKNKVSLQNLSMVLRQL 183

Query: 311 AEHEKAVYKKQKE 323
                  + +   
Sbjct: 184 QTDSGDEHSRHVM 196

>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus} Length = 474

 Score = 45.8 bits (108), Expect = 1e-05
 Identities = 23/173 (13%), Positives = 48/173 (27%), Gaps = 33/173 (19%)

Query: 179 IGAADRRKMDGNALFKEEKLEEAMQQYEMAIAY----------MGDDFMFQLFGKYRDM- 227
           +    R+    +       + ++++Q ++A+            +G+ ++   F   ++  
Sbjct: 176 LSMVLRQLQTDSGDEHSRHVMDSVRQAKLAVQMDVLDGRSWYILGNAYLSLYFNTGQNPK 235

Query: 228 -----------ALAVKNPC------HLNMAACLLKLKRYEEAIGQCSLVLGEDENNVKAL 270
                      A  V          HLN A      + Y EA+   S     D    +  
Sbjct: 236 ISQQALSAYAQAEKVDRKASSNPDLHLNRATLHKYEESYGEALEGFSQAAALDPAWPEPQ 295

Query: 271 FRRGKARAELGQTDAAREDFLKAGKFAPEDKSIARELRLLAEHEKAVYKKQKE 323
            R  +    L +  +  E   K        K +   L  L           + 
Sbjct: 296 QREQQLLEFLSRLTSLLESKGKTKP-----KKLQSMLGSLRPAHLGPCGDGRY 343

>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus} Length = 474

 Score = 42.7 bits (100), Expect = 1e-04
 Identities = 20/174 (11%), Positives = 42/174 (24%), Gaps = 40/174 (22%)

Query: 189 GNALFKEEKLEEAMQQYEMAIAY----------------MGDDFMFQLFGKYR------D 226
           G   +K+  +  A   +  A+ +                +  D   +             
Sbjct: 144 GEVYWKKGDVTSAHTCFSGALTHCKNKVSLQNLSMVLRQLQTDSGDEHSRHVMDSVRQAK 203

Query: 227 MALAVKN---PCHLNMAACLL--------KLKRYEEAIG--QCSLVLGEDE-NNVKALFR 272
           +A+ +          +    L          K  ++A+     +  +     +N      
Sbjct: 204 LAVQMDVLDGRSWYILGNAYLSLYFNTGQNPKISQQALSAYAQAEKVDRKASSNPDLHLN 263

Query: 273 RGKARAELGQTDAAREDFLKAGKFAPEDKS----IARELRLLAEHEKAVYKKQK 322
           R            A E F +A    P          + L  L+     +  K K
Sbjct: 264 RATLHKYEESYGEALEGFSQAAALDPAWPEPQQREQQLLEFLSRLTSLLESKGK 317

>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus} Length = 474

 Score = 42.7 bits (100), Expect = 1e-04
 Identities = 24/141 (17%), Positives = 44/141 (31%), Gaps = 21/141 (14%)

Query: 189 GNALFKEEKLEEAMQQYEMAI--AYMGDDFMFQLFGKYRDMALAVKNPCHLNMAACLLKL 246
                +EE+ +  +Q+ +  +   Y   D  F+       +  A +    +         
Sbjct: 34  SMMADEEEEAKHVLQKLQGLVDRLYCFRDSYFETH----SVEDAGRKQQDVQ-------- 81

Query: 247 KRYEEAIGQCSLVLGEDENNVKALFRRGKARAELGQ-TDAAREDFLKAGKFAPEDKSI-- 303
           +  E+ + Q   VLG  +   +AL  +GKA       +  A     KA K  PE      
Sbjct: 82  EEMEKTLQQMEEVLGSAQVEAQALMLKGKALNVTPDYSPEAEVLLSKAVKLEPELVEAWN 141

Query: 304 --ARELRLLAEHEKAV--YKK 320
                     +   A   +  
Sbjct: 142 QLGEVYWKKGDVTSAHTCFSG 162

>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis} Length = 99

 Score = 41.2 bits (97), Expect = 4e-05
 Identities = 13/69 (18%), Positives = 25/69 (36%), Gaps = 1/69 (1%)

Query: 236 HLNMAACLLKLKRYEEAIGQCSLVLGEDENNV-KALFRRGKARAELGQTDAAREDFLKAG 294
            L     L+     E A+      L  +     +A +  G A  +LG    A  ++  A 
Sbjct: 3   QLKTIKELINQGDIENALQALEEFLQTEPVGKDEAYYLMGNAYRKLGDWQKALNNYQSAI 62

Query: 295 KFAPEDKSI 303
           +  P+  ++
Sbjct: 63  ELNPDSPAL 71

>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio} Length = 307

 Score = 43.7 bits (103), Expect = 5e-05
 Identities = 18/137 (13%), Positives = 41/137 (29%), Gaps = 19/137 (13%)

Query: 182 ADRRKMDGNALFKEEKLEEAMQQYEMAIAYMGDDFMFQLFGKYRDMALAVKNPCHLNMAA 241
           A         L +   L +A+  Y+ A A      +F+   + R  A           + 
Sbjct: 115 AAMALDRAGKLMEPLDLSKAVHLYQQAAA------VFENEERLRQAAE-----LIGKASR 163

Query: 242 CLLKLKRYEEAI------GQCSLVLGEDENNVKALFRRGKARAELGQTDAAREDFLKAGK 295
            L++ ++++EA             +       K    +   +       AA++   ++  
Sbjct: 164 LLVRQQKFDEAAASLQKEKSMYKEMENYPTCYKKCIAQVLVQLHRADYVAAQKCVRESYS 223

Query: 296 FAPEDKSIARELRLLAE 312
                 S   +   L +
Sbjct: 224 IPGFSGS--EDCAALED 238

>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A Length = 91

 Score = 38.9 bits (92), Expect = 2e-04
 Identities = 24/93 (25%), Positives = 38/93 (40%), Gaps = 17/93 (18%)

Query: 189 GNALFKEEKLEEAMQQYEMAIAYMGDDFMFQLFGKYRDMALAVKNPCHLNMAACLLKLKR 248
           GNA +K+   +EA++ Y+ A+    ++            A A       N+     K   
Sbjct: 16  GNAYYKQGDYDEAIEYYQKALELDPNN------------AEA-----WYNLGNAYYKQGD 58

Query: 249 YEEAIGQCSLVLGEDENNVKALFRRGKARAELG 281
           Y+EAI      L  D NN +A    G A+ + G
Sbjct: 59  YDEAIEYYQKALELDPNNAEAKQNLGNAKQKQG 91

>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A Length = 91

 Score = 38.1 bits (90), Expect = 4e-04
 Identities = 19/58 (32%), Positives = 25/58 (43%)

Query: 236 HLNMAACLLKLKRYEEAIGQCSLVLGEDENNVKALFRRGKARAELGQTDAAREDFLKA 293
             N+     K   Y+EAI      L  D NN +A +  G A  + G  D A E + KA
Sbjct: 12  WYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKA 69

>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens} Length = 406

 Score = 40.7 bits (96), Expect = 5e-04
 Identities = 29/164 (17%), Positives = 54/164 (32%), Gaps = 29/164 (17%)

Query: 189 GNALFKEEKLEEAMQQYEMAIAYMGDDFMFQLFGKYRDMALAVKNPCHLNMAACLLKLKR 248
           GN  +      +A+  +E  +       + + FG       A     + N+    + L  
Sbjct: 194 GNTHYLLGNFRDAVIAHEQRLL------IAKEFGDKAAERRA-----YSNLGNAYIFLGE 242

Query: 249 YEEAIG--QCSLVLGE---DENNV-KALFRRGKARAELGQTDAAREDFLKAGKFAPEDK- 301
           +E A    + +L+L     D     ++ +  G     L   + A +  LK    A E   
Sbjct: 243 FETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELND 302

Query: 302 --SIARELRLLA-------EHEKAV--YKKQKEIYKGIFGPRPE 334
                R    L         H++A+   +K  EI + +     E
Sbjct: 303 RIGEGRACWSLGNAYTALGNHDQAMHFAEKHLEISREVGDKSGE 346

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	365
2if4_A	338	ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha,	100.0
1kt0_A	457	FKBP51, 51 kDa FK506-binding protein; FKBP-like pp	100.0
1p5q_A	336	FKBP52, FK506-binding protein 4; isomerase; 2.80A	100.0
2f4e_A	180	ATFKBP42; FKBP-like, alpha-beta, signaling protein	99.97
1kt0_A	457	FKBP51, 51 kDa FK506-binding protein; FKBP-like pp	99.93
2lkn_A	165	AH receptor-interacting protein; FKBP-type domain,	99.93
1jvw_A	167	Macrophage infectivity potentiator; chagas disease	99.93
2jwx_A	157	FKBP38NTD, FK506-binding protein 8 variant; apopto	99.93
1yat_A	113	FK506 binding protein; HET: FK5; 2.50A {Saccharomy	99.92
3o5e_A	144	Peptidyl-prolyl CIS-trans isomerase FKBP5; FK-506	99.92
3oe2_A	219	Peptidyl-prolyl CIS-trans isomerase; FKBP, ppiase,	99.92
3kz7_A	119	FK506-binding protein 3; FKPB ppiase rapamycin, is	99.92
3o5q_A	128	Peptidyl-prolyl CIS-trans isomerase FKBP5; FK-506	99.92
2y78_A	133	Peptidyl-prolyl CIS-trans isomerase; MIP, ppiase,	99.92
3b7x_A	134	FK506-binding protein 6; isomerase, repeat, rotama	99.92
2ppn_A	107	FK506-binding protein 1A; high resolution protein	99.91
2awg_A	118	38 kDa FK-506 binding protein; FKBP-type, ppiase,	99.91
4dip_A	125	Peptidyl-prolyl CIS-trans isomerase FKBP14; struct	99.91
1fd9_A	213	Protein (macrophage infectivity potentiator prote;	99.91
1r9h_A	135	FKB-6, FK506 binding protein family; structural ge	99.91
2lgo_A	130	FKBP; infectious disease, isomerase, giardiasis, s	99.91
2vn1_A	129	70 kDa peptidylprolyl isomerase; FKBP, FK506, TPR	99.91
3uf8_A	209	Ubiquitin-like protein SMT3, peptidyl-prolyl CIS-	99.9
2d9f_A	135	FK506-binding protein 8 variant; FKBP, rapamycin,	99.9
1q6h_A	224	FKBP-type peptidyl-prolyl CIS-trans isomerase FKP;	99.9
1u79_A	129	FKBP-type peptidyl-prolyl CIS-trans isomerase 3; T	99.9
3rkv_A	162	Putative peptidylprolyl isomerase; structural geno	99.9
4gco_A	126	Protein STI-1; structural genomics, PSI-biology, m	99.86
1q1c_A	280	FK506-binding protein 4; rotamase, TPR repeat, nuc	99.86
2pbc_A	102	FK506-binding protein 2; endoplasmic reticulum, is	99.85
2fbn_A	198	70 kDa peptidylprolyl isomerase, putative; sulfur	99.85
2hr2_A	159	Hypothetical protein; alpha-alpha superhelix fold,	99.84
3jxv_A	356	70 kDa peptidyl-prolyl isomerase; FKBP- binding do	99.82
3jxv_A	356	70 kDa peptidyl-prolyl isomerase; FKBP- binding do	99.82
1ihg_A	370	Cyclophilin 40; ppiase immunophilin tetratricopept	99.8
1q1c_A	280	FK506-binding protein 4; rotamase, TPR repeat, nuc	99.78
4gcn_A	127	Protein STI-1; structural genomics, PSI-biology, m	99.77
3upv_A	126	Heat shock protein STI1; TPR-fold, adaptor protein	99.76
3sz7_A	164	HSC70 cochaperone (SGT); TPR domain, GET4, GET5, G	99.71
3gyz_A	151	Chaperone protein IPGC; asymmetric homodimer, tetr	99.71
4ga2_A	150	E3 SUMO-protein ligase ranbp2; TPR motif, nuclear	99.7
4ga2_A	150	E3 SUMO-protein ligase ranbp2; TPR motif, nuclear	99.68
2xcb_A	142	PCRH, regulatory protein PCRH; protein transport,	99.68
2vgx_A	148	Chaperone SYCD; alternative dimer assembly, tetrat	99.67
3q49_B	137	STIP1 homology and U box-containing protein 1; E3	99.67
4gyw_A	723	UDP-N-acetylglucosamine--peptide N- acetylglucosam	99.67
4dt4_A	169	FKBP-type 16 kDa peptidyl-prolyl CIS-trans isomer;	99.66
3urz_A	208	Uncharacterized protein; tetratricopeptide repeats	99.66
4i17_A	228	Hypothetical protein; TPR repeats protein, structu	99.64
3pr9_A	157	FKBP-type peptidyl-prolyl CIS-trans isomerase; FKB	99.64
1hxv_A	113	Trigger factor; FKBP fold, ppiase, chaperone; NMR	99.63
1elw_A	118	TPR1-domain of HOP; HOP, TPR-domain, peptide-compl	99.62
2pl2_A	217	Hypothetical conserved protein TTC0263; TPR, prote	99.61
1a17_A	166	Serine/threonine protein phosphatase 5; hydrolase,	99.61
3vtx_A	184	MAMA; tetratricopeptide repeats (TPR) containing p	99.61
2h6f_A	382	Protein farnesyltransferase/geranylgeranyltransfer	99.6
2vyi_A	131	SGTA protein; chaperone, TPR repeat, phosphoprotei	99.6
2pl2_A	217	Hypothetical conserved protein TTC0263; TPR, prote	99.59
3prb_A	231	FKBP-type peptidyl-prolyl CIS-trans isomerase; cha	99.59
2kr7_A	151	FKBP-type peptidyl-prolyl CIS-trans isomerase SLY;	99.58
2dba_A	148	Smooth muscle cell associated protein-1, isoform 2	99.58
1hxi_A	121	PEX5, peroxisome targeting signal 1 receptor PEX5;	99.58
2lni_A	133	Stress-induced-phosphoprotein 1; structural genomi	99.57
2xev_A	129	YBGF; tetratricopeptide, alpha-helical, metal bind	99.57
2h6f_A	382	Protein farnesyltransferase/geranylgeranyltransfer	99.57
2kfw_A	196	FKBP-type peptidyl-prolyl CIS-trans isomerase SLYD	99.56
1elr_A	131	TPR2A-domain of HOP; HOP, TPR-domain, peptide-comp	99.56
2k8i_A	171	SLYD, peptidyl-prolyl CIS-trans isomerase; ppiase,	99.56
4gyw_A	723	UDP-N-acetylglucosamine--peptide N- acetylglucosam	99.55
1zu2_A	158	Mitochondrial import receptor subunit TOM20-3; TPR	99.55
1wao_1	477	Serine/threonine protein phosphatase 5; hydrolase,	99.54
2c2l_A	281	CHIP, carboxy terminus of HSP70-interacting protei	99.53
4i17_A	228	Hypothetical protein; TPR repeats protein, structu	99.53
1ix5_A	151	FKBP; ppiase, isomerase; NMR {Methanothermococcust	99.52
3gyz_A	151	Chaperone protein IPGC; asymmetric homodimer, tetr	99.51
3vtx_A	184	MAMA; tetratricopeptide repeats (TPR) containing p	99.5
4gco_A	126	Protein STI-1; structural genomics, PSI-biology, m	99.5
1na0_A	125	Designed protein CTPR3; de novo protein; HET: IPT;	99.49
3k9i_A	117	BH0479 protein; putative protein binding protein,	99.49
1hh8_A	213	P67PHOX, NCF-2, neutrophil cytosol factor 2; cell	99.49
3urz_A	208	Uncharacterized protein; tetratricopeptide repeats	99.48
3qky_A	261	Outer membrane assembly lipoprotein YFIO; membrane	99.47
3cgm_A	158	SLYD, peptidyl-prolyl CIS-trans isomerase; chapero	99.46
2yhc_A	225	BAMD, UPF0169 lipoprotein YFIO; essential BAM comp	99.46
2kck_A	112	TPR repeat; tetratricopeptide repeat, structural g	99.45
2vgx_A	148	Chaperone SYCD; alternative dimer assembly, tetrat	99.45
2e2e_A	177	Formate-dependent nitrite reductase complex NRFG;	99.44
2pzi_A	681	Probable serine/threonine-protein kinase PKNG; ATP	99.43
2fo7_A	136	Synthetic consensus TPR protein; tetratricopeptide	99.43
2e2e_A	177	Formate-dependent nitrite reductase complex NRFG;	99.43
3qky_A	261	Outer membrane assembly lipoprotein YFIO; membrane	99.42
3u4t_A	272	TPR repeat-containing protein; structural genomics	99.42
3ieg_A	359	DNAJ homolog subfamily C member 3; TPR motif, chap	99.42
4abn_A	474	Tetratricopeptide repeat protein 5; P53 cofactor,	99.41
2vsy_A	568	XCC0866; transferase, glycosyl transferase, GT-B,	99.41
4abn_A	474	Tetratricopeptide repeat protein 5; P53 cofactor,	99.4
1xnf_A	275	Lipoprotein NLPI; TPR, tetratricopeptide, structur	99.4
3uq3_A	258	Heat shock protein STI1; HSP90, peptide binding, c	99.4
2xcb_A	142	PCRH, regulatory protein PCRH; protein transport,	99.4
3as5_A	186	MAMA; tetratricopeptide repeats (TPR) containing p	99.4
2y4t_A	450	DNAJ homolog subfamily C member 3; chaperone, endo	99.39
4eqf_A	365	PEX5-related protein; accessory protein, tetratric	99.39
1w3b_A	388	UDP-N-acetylglucosamine--peptide N-acetylglucosami	99.39
4eqf_A	365	PEX5-related protein; accessory protein, tetratric	99.39
3as5_A	186	MAMA; tetratricopeptide repeats (TPR) containing p	99.38
3ieg_A	359	DNAJ homolog subfamily C member 3; TPR motif, chap	99.38
2q7f_A	243	YRRB protein; TPR, protein binding; 2.49A {Bacillu	99.38
1w3b_A	388	UDP-N-acetylglucosamine--peptide N-acetylglucosami	99.37
3uq3_A	258	Heat shock protein STI1; HSP90, peptide binding, c	99.37
3u4t_A	272	TPR repeat-containing protein; structural genomics	99.37
3fp2_A	537	TPR repeat-containing protein YHR117W; TOM71, mito	99.37
2l6j_A	111	TPR repeat-containing protein associated with HSP;	99.36
2vq2_A	225	PILW, putative fimbrial biogenesis and twitching m	99.36
2ho1_A	252	Type 4 fimbrial biogenesis protein PILF; type IV p	99.36
2q7f_A	243	YRRB protein; TPR, protein binding; 2.49A {Bacillu	99.36
3hym_B	330	Cell division cycle protein 16 homolog; APC, anaph	99.36
1hh8_A	213	P67PHOX, NCF-2, neutrophil cytosol factor 2; cell	99.35
3mkr_A	291	Coatomer subunit epsilon; tetratricopeptide repeat	99.35
2pzi_A	681	Probable serine/threonine-protein kinase PKNG; ATP	99.35
2y4t_A	450	DNAJ homolog subfamily C member 3; chaperone, endo	99.34
1hxi_A	121	PEX5, peroxisome targeting signal 1 receptor PEX5;	99.33
2vq2_A	225	PILW, putative fimbrial biogenesis and twitching m	99.32
2ho1_A	252	Type 4 fimbrial biogenesis protein PILF; type IV p	99.32
1fch_A	368	Peroxisomal targeting signal 1 receptor; protein-p	99.32
1qqe_A	292	Vesicular transport protein SEC17; helix-turn-heli	99.32
2kat_A	115	Uncharacterized protein; NESG, structure, structur	99.32
1fch_A	368	Peroxisomal targeting signal 1 receptor; protein-p	99.31
1xnf_A	275	Lipoprotein NLPI; TPR, tetratricopeptide, structur	99.31
3qou_A	287	Protein YBBN; thioredoxin-like fold, tetratricopep	99.31
2yhc_A	225	BAMD, UPF0169 lipoprotein YFIO; essential BAM comp	99.31
3upv_A	126	Heat shock protein STI1; TPR-fold, adaptor protein	99.31
2r5s_A	176	Uncharacterized protein VP0806; APC090868.1, vibri	99.31
4gcn_A	127	Protein STI-1; structural genomics, PSI-biology, m	99.3
3sz7_A	164	HSC70 cochaperone (SGT); TPR domain, GET4, GET5, G	99.3
1qqe_A	292	Vesicular transport protein SEC17; helix-turn-heli	99.3
2gw1_A	514	Mitochondrial precursor proteins import receptor;	99.29
3hym_B	330	Cell division cycle protein 16 homolog; APC, anaph	99.29
3cv0_A	327	Peroxisome targeting signal 1 receptor PEX5; TPR m	99.25
1w26_A	432	Trigger factor, TF; chaperone, protein folding, ri	99.25
2vsy_A	568	XCC0866; transferase, glycosyl transferase, GT-B,	99.25
1p5q_A	336	FKBP52, FK506-binding protein 4; isomerase; 2.80A	99.24
2fo7_A	136	Synthetic consensus TPR protein; tetratricopeptide	99.21
3cv0_A	327	Peroxisome targeting signal 1 receptor PEX5; TPR m	99.21
3q49_B	137	STIP1 homology and U box-containing protein 1; E3	99.2
3edt_B	283	KLC 2, kinesin light chain 2; superhelical, struct	99.19
2l6j_A	111	TPR repeat-containing protein associated with HSP;	99.19
3mkr_A	291	Coatomer subunit epsilon; tetratricopeptide repeat	99.19
3fp2_A	537	TPR repeat-containing protein YHR117W; TOM71, mito	99.19
1na3_A	91	Designed protein CTPR2; de novo protein; HET: IPT;	99.18
2hr2_A	159	Hypothetical protein; alpha-alpha superhelix fold,	99.18
4g1t_A	472	Interferon-induced protein with tetratricopeptide	99.17
2kck_A	112	TPR repeat; tetratricopeptide repeat, structural g	99.15
2r5s_A	176	Uncharacterized protein VP0806; APC090868.1, vibri	99.14
2kc7_A	99	BFR218_protein; tetratricopeptide repeat, all-alph	99.14
3qou_A	287	Protein YBBN; thioredoxin-like fold, tetratricopep	99.13
3rkv_A	162	Putative peptidylprolyl isomerase; structural geno	99.13
2xpi_A	597	Anaphase-promoting complex subunit CUT9; cell cycl	99.13
1elw_A	118	TPR1-domain of HOP; HOP, TPR-domain, peptide-compl	99.12
3ma5_A	100	Tetratricopeptide repeat domain protein; NESG, str	99.12
1na3_A	91	Designed protein CTPR2; de novo protein; HET: IPT;	99.12
2lni_A	133	Stress-induced-phosphoprotein 1; structural genomi	99.11
3edt_B	283	KLC 2, kinesin light chain 2; superhelical, struct	99.11
3ro3_A	164	PINS homolog, G-protein-signaling modulator 2; asy	99.11
1t11_A	392	Trigger factor, TF; helix-turn-helix, four-helix-b	99.11
2fbn_A	198	70 kDa peptidylprolyl isomerase, putative; sulfur	99.1
3ulq_A	383	Response regulator aspartate phosphatase F; tetrat	99.1
2xev_A	129	YBGF; tetratricopeptide, alpha-helical, metal bind	99.1
2xpi_A	597	Anaphase-promoting complex subunit CUT9; cell cycl	99.09
2ifu_A	307	Gamma-SNAP; membrane fusion, snare complex disasse	99.09
3u3w_A	293	Transcriptional activator PLCR protein; ternary co	99.08
1a17_A	166	Serine/threonine protein phosphatase 5; hydrolase,	99.07
2gw1_A	514	Mitochondrial precursor proteins import receptor;	99.07
4a1s_A	411	PINS, partner of inscuteable; cell cycle, LGN, mit	99.06
2kc7_A	99	BFR218_protein; tetratricopeptide repeat, all-alph	99.06
3n71_A	490	Histone lysine methyltransferase SMYD1; heart deve	99.06
2vyi_A	131	SGTA protein; chaperone, TPR repeat, phosphoprotei	99.05
1na0_A	125	Designed protein CTPR3; de novo protein; HET: IPT;	99.03
3u3w_A	293	Transcriptional activator PLCR protein; ternary co	99.02
2qfc_A	293	PLCR protein; TPR, HTH, transcription regulation;	99.02
3ulq_A	383	Response regulator aspartate phosphatase F; tetrat	99.02
2ifu_A	307	Gamma-SNAP; membrane fusion, snare complex disasse	99.02
3nf1_A	311	KLC 1, kinesin light chain 1; TPR, structural geno	99.02
1pc2_A	152	Mitochondria fission protein; unknown function; NM	99.02
3nf1_A	311	KLC 1, kinesin light chain 1; TPR, structural geno	99.02
3q15_A	378	PSP28, response regulator aspartate phosphatase H;	99.02
3q15_A	378	PSP28, response regulator aspartate phosphatase H;	99.01
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	99.01
2dba_A	148	Smooth muscle cell associated protein-1, isoform 2	99.01
2ond_A	308	Cleavage stimulation factor 77 kDa subunit; HAT do	98.99
3ro2_A	338	PINS homolog, G-protein-signaling modulator 2; TPR	98.99
1ouv_A	273	Conserved hypothetical secreted protein; TPR repea	98.98
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	98.97
3sf4_A	406	G-protein-signaling modulator 2; tetratricopeptide	98.97
2ond_A	308	Cleavage stimulation factor 77 kDa subunit; HAT do	98.95
2if4_A	338	ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha,	98.95
1elr_A	131	TPR2A-domain of HOP; HOP, TPR-domain, peptide-comp	98.94
3sf4_A	406	G-protein-signaling modulator 2; tetratricopeptide	98.94
2c2l_A	281	CHIP, carboxy terminus of HSP70-interacting protei	98.94
4g1t_A	472	Interferon-induced protein with tetratricopeptide	98.92
3gw4_A	203	Uncharacterized protein; structural genomics, PSI-	98.92
3k9i_A	117	BH0479 protein; putative protein binding protein,	98.91
2qfc_A	293	PLCR protein; TPR, HTH, transcription regulation;	98.91
3ro3_A	164	PINS homolog, G-protein-signaling modulator 2; asy	98.9
3dss_A	331	Geranylgeranyl transferase type-2 subunit alpha; p	98.9
3ro2_A	338	PINS homolog, G-protein-signaling modulator 2; TPR	98.9
1ihg_A	370	Cyclophilin 40; ppiase immunophilin tetratricopept	98.89
3dra_A	306	Protein farnesyltransferase/geranylgeranyltransfer	98.88
4a1s_A	411	PINS, partner of inscuteable; cell cycle, LGN, mit	98.87
1wao_1	477	Serine/threonine protein phosphatase 5; hydrolase,	98.86
3qww_A	433	SET and MYND domain-containing protein 2; methyltr	98.84
1zu2_A	158	Mitochondrial import receptor subunit TOM20-3; TPR	98.84
1ouv_A	273	Conserved hypothetical secreted protein; TPR repea	98.84
4f3v_A	282	ESX-1 secretion system protein ECCA1; tetratricope	98.83
3rjv_A	212	Putative SEL1 repeat protein; alpha-alpha superhel	98.83
3q7a_A	349	Farnesyltransferase alpha subunit; protein prenylt	98.82
3dra_A	306	Protein farnesyltransferase/geranylgeranyltransfer	98.8
3dss_A	331	Geranylgeranyl transferase type-2 subunit alpha; p	98.79
3rjv_A	212	Putative SEL1 repeat protein; alpha-alpha superhel	98.78
3q7a_A	349	Farnesyltransferase alpha subunit; protein prenylt	98.76
3qwp_A	429	SET and MYND domain-containing protein 3; SMYD3,SE	98.76
2v5f_A	104	Prolyl 4-hydroxylase subunit alpha-1; endoplasmic	98.71
4f3v_A	282	ESX-1 secretion system protein ECCA1; tetratricope	98.68
3ma5_A	100	Tetratricopeptide repeat domain protein; NESG, str	98.66
3bee_A	93	Putative YFRE protein; putaive YFRE protein, struc	98.65
2ooe_A	530	Cleavage stimulation factor 77 kDa subunit; HAT do	98.63
2v5f_A	104	Prolyl 4-hydroxylase subunit alpha-1; endoplasmic	98.62
3gw4_A	203	Uncharacterized protein; structural genomics, PSI-	98.62
1hz4_A	373	MALT regulatory protein; two-helix bundles, helix	98.61
1nzn_A	126	CGI-135 protein, fission protein FIS1P; TPR, unkno	98.59
2kat_A	115	Uncharacterized protein; NESG, structure, structur	98.56
2ooe_A	530	Cleavage stimulation factor 77 kDa subunit; HAT do	98.53
1klx_A	138	Cysteine rich protein B; structural genomics, heli	98.53
2xm6_A	490	Protein corresponding to locus C5321 from CFT073 s	98.4
1hz4_A	373	MALT regulatory protein; two-helix bundles, helix	98.39
1xi4_A	1630	Clathrin heavy chain; alpha-ZIG-ZAG, beta-propelle	98.36
1b89_A	449	Protein (clathrin heavy chain); triskelion, coated	98.34
3n71_A	490	Histone lysine methyltransferase SMYD1; heart deve	98.33
3e4b_A	452	ALGK; tetratricopeptide repeat, superhelix, algina	98.29
1klx_A	138	Cysteine rich protein B; structural genomics, heli	98.28
4b4t_Q	434	26S proteasome regulatory subunit RPN6; hydrolase,	98.26
2xm6_A	490	Protein corresponding to locus C5321 from CFT073 s	98.25
3u64_A	301	Protein TP_0956; tetratrico peptide repeat, protei	98.2
4b4t_Q	434	26S proteasome regulatory subunit RPN6; hydrolase,	98.13
1pc2_A	152	Mitochondria fission protein; unknown function; NM	98.09
3ly7_A	372	Transcriptional activator CADC; alpha/beta domain,	98.09
3o48_A	134	Mitochondria fission 1 protein; tetratricopeptide	98.08
3e4b_A	452	ALGK; tetratricopeptide repeat, superhelix, algina	98.07
1y8m_A	144	FIS1; mitochondria, unknown function; NMR {Sacchar	98.06
1xi4_A	1630	Clathrin heavy chain; alpha-ZIG-ZAG, beta-propelle	97.94
3mv2_B	310	Coatomer subunit epsilon; vesicular membrane coat	97.85
3mv2_B	310	Coatomer subunit epsilon; vesicular membrane coat	97.83
3bee_A	93	Putative YFRE protein; putaive YFRE protein, struc	97.79
3u64_A	301	Protein TP_0956; tetratrico peptide repeat, protei	97.75
3ffl_A	167	Anaphase-promoting complex subunit 7; tetratricope	97.75
3qwp_A	429	SET and MYND domain-containing protein 3; SMYD3,SE	97.52
3gty_X	433	Trigger factor, TF; chaperone-client complex, cell	97.49
3qww_A	433	SET and MYND domain-containing protein 2; methyltr	97.48
2ff4_A	388	Probable regulatory protein EMBR; winged-helix, te	97.46
1b89_A	449	Protein (clathrin heavy chain); triskelion, coated	97.27
1nzn_A	126	CGI-135 protein, fission protein FIS1P; TPR, unkno	97.2
3o48_A	134	Mitochondria fission 1 protein; tetratricopeptide	97.16
1y8m_A	144	FIS1; mitochondria, unknown function; NMR {Sacchar	97.04
4e6h_A	679	MRNA 3'-END-processing protein RNA14; HAT domain,	96.95
4e6h_A	679	MRNA 3'-END-processing protein RNA14; HAT domain,	96.67
3ffl_A	167	Anaphase-promoting complex subunit 7; tetratricope	96.55
4h7y_A	161	Dual specificity protein kinase TTK; mitotic check	96.12
3ly7_A	372	Transcriptional activator CADC; alpha/beta domain,	95.94
4gns_B	754	Protein CSD3, chitin biosynthesis protein CHS6; FN	95.32
1zbp_A	273	Hypothetical protein VPA1032; alpha-beta protein,	95.24
2uy1_A	493	Cleavage stimulation factor 77; RNA-binding protei	95.04
1ya0_A	497	SMG-7 transcript variant 2; alpha-helical repeat,	95.01
2uy1_A	493	Cleavage stimulation factor 77; RNA-binding protei	94.56
3kae_A	242	CDC27, possible protein of nuclear scaffold; tetra	94.51
3txn_A	394	26S proteasome regulatory complex subunit P42B; PC	94.29
4b4t_R	429	RPN7, 26S proteasome regulatory subunit RPN7; hydr	93.6
4gns_B	754	Protein CSD3, chitin biosynthesis protein CHS6; FN	93.44
1zbp_A	273	Hypothetical protein VPA1032; alpha-beta protein,	92.85
2v6y_A	83	AAA family ATPase, P60 katanin; MIT, VPS4, archaea	91.95
4g26_A	501	Pentatricopeptide repeat-containing protein AT2G3	90.89
4b4t_P	445	26S proteasome regulatory subunit RPN5; hydrolase,	90.86
2ff4_A	388	Probable regulatory protein EMBR; winged-helix, te	90.26
2cpt_A	117	SKD1 protein, vacuolar sorting protein 4B; MIT, he	89.92
4g26_A	501	Pentatricopeptide repeat-containing protein AT2G3	89.89
3mv2_A	325	Coatomer subunit alpha; vesicular membrane coat CO	88.51
2w2u_A	83	Hypothetical P60 katanin; hydrolase transport comp	88.21
2v6x_A	85	Vacuolar protein sorting-associated protein 4; pro	87.27
3mkr_B	320	Coatomer subunit alpha; tetratricopeptide repeats	87.06
1ya0_A	497	SMG-7 transcript variant 2; alpha-helical repeat,	86.3
1wfd_A	93	Hypothetical protein 1500032H18; MIT domain, struc	86.12
4b4t_S	523	RPN3, 26S proteasome regulatory subunit RPN3; hydr	85.45
3mkq_B	177	Coatomer subunit alpha; beta-propeller, alpha-sole	85.17
2dl1_A	116	Spartin; SPG20, MIT, structural genomics, NPPSFA,	83.04
4a5x_A	86	MITD1, MIT domain-containing protein 1; protein tr	83.01
2crb_A	97	Nuclear receptor binding factor 2; NRBF-2, MIT dom	81.32
3mkq_A	814	Coatomer beta'-subunit; beta-propeller, alpha-sole	81.19

>2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana}

Probab=100.00  E-value=6.2e-53  Score=399.60  Aligned_cols=335  Identities=76%  Similarity=1.193  Sum_probs=240.8

Q ss_pred             CcccCCCCCCCCCCCCCCcchhhccccccCCCCCCCCCCCCCCCCceeeeCCCeEEEEEecCCCCCCCCCCEEEEEEEEE
Q 017811            1 MEEVDGEPKSQAPGEVGESEIVTEDAAFVRGEPPQDGDGPPKVDSEVEVLHEKVTKQIIKEGHGQKPSKYSTCFLHYRAW   80 (365)
Q Consensus         1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gv~k~v~~~G~g~~p~~g~~v~v~y~~~   80 (365)
                      |+|++|.+.   ...++++++..+..+.+...+..+...||++..++.++++||.|+|+++|.|..|..||.|+|||+++
T Consensus         1 ~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~g~~~~~gd~v~v~y~g~   77 (338)
T 2if4_A            1 MDESLEHQT---QTHDQESEIVTEGSAVVHSEPSQEGNVPPKVDSEAEVLDEKVSKQIIKEGHGSKPSKYSTCFLHYRAW   77 (338)
T ss_dssp             -------------------------------------CCCCCCCSCCEEEETTEEEEEEECCBSCCCCTTCEEEEEEEEE
T ss_pred             Chhhhhhhc---cccCccchhhhhhhccCCCCCCcccCCCCCCCcCceeCCCCeEEEEEeCCCCCCCCCCCEEEEEEEEE
Confidence            778888765   33444477888888889999999999999999999999999999999999999999999999999999


Q ss_pred             EcCCCeeeccCcCCCCcceeecCCCCchhhhHHHHHhcCCcCcEEEEEeccccccCCCCCCCCCCCCCCCcEEEEEEEEe
Q 017811           81 AESTRHKFDDTWLEQQPLEMVLGKEKKEMTGLAIGVSSMKAGEHALLHVGWELGYGKEGSFSFPNVSPMADLVYEVVLIG  160 (365)
Q Consensus        81 ~~~~g~~fd~s~~~~~p~~f~lg~~~~~i~g~e~~l~~Mk~GE~~~~~i~~~~~yg~~g~~~~~~ip~~~~l~~~iel~~  160 (365)
                      +.++|++||+++.++.|++|++|.|+++|+||+.+|.+|++||++.|+|||.++||..|...++.||++++++|.|+|+.
T Consensus        78 ~~~~g~~fd~~~~~~~~~~~~lg~~~~~i~g~e~~l~~m~~Ge~~~~~i~~~~~yg~~~~~~~~~ip~~~~l~f~v~L~~  157 (338)
T 2if4_A           78 TKNSQHKFEDTWHEQQPIELVLGKEKKELAGLAIGVASMKSGERALVHVGWELAYGKEGNFSFPNVPPMADLLYEVEVIG  157 (338)
T ss_dssp             ETTTCCCCEEHHHHTCCEEEETTSCCGGGHHHHHHHHHCCBTCEEEEEECGGGSSCSSCCCSSSCCCTTCCEEEEEEEEE
T ss_pred             EcCCCcEeecccCCCCCeEEEcCCCCcccHHHHHHHhcCCCCCeEEEEECHHHhcCCCCCCCCCCCCCCCcEEEEEEEEE
Confidence            98769999999877889999999874699999999999999999999999999999998644478999999999999999


Q ss_pred             eecCcccccCCCCCHHHHHHHHHHhhhhhhhhhhhhhHHHHHHHHHHHHHhhccchhhhhhhhHHHHHHHhhchhhhHHH
Q 017811          161 FDETKEGKARSDMTVEERIGAADRRKMDGNALFKEEKLEEAMQQYEMAIAYMGDDFMFQLFGKYRDMALAVKNPCHLNMA  240 (365)
Q Consensus       161 ~~~~~~~~~~~~~~~~e~~~~a~~~k~~G~~~~~~~~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla  240 (365)
                      +....++...|.++.++++..+..++..|+.+++.|+|.+|+..|.+|+.+.|.+..+...+...+....+...+|+|+|
T Consensus       158 ~~~~~e~~~~~~~~~~~~~~~a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~l~~~~~~nla  237 (338)
T 2if4_A          158 FDETKEGKARSDMTVEERIGAADRRKMDGNSLFKEEKLEEAMQQYEMAIAYMGDDFMFQLYGKYQDMALAVKNPCHLNIA  237 (338)
T ss_dssp             EECCCCCBTTTBCCHHHHHHHHHHHHHHHHHTCSSSCCHHHHHHHHHHHHHSCHHHHHTCCHHHHHHHHHHHTHHHHHHH
T ss_pred             ecCCccccccccCCHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhccchhhhhcccHHHHHHHHHHHHHHHHH
Confidence            99988888899999999999999999999999999999999999999999999876544455555666667778999999


Q ss_pred             HHHHHhcCHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHHHHHHHH
Q 017811          241 ACLLKLKRYEEAIGQCSLVLGEDENNVKALFRRGKARAELGQTDAAREDFLKAGKFAPEDKSIARELRLLAEHEKAVYKK  320 (365)
Q Consensus       241 ~~~~kl~~~~~A~~~~~~aL~~~p~n~ka~~~~g~a~~~l~~~~~A~~~l~~al~l~P~n~~~~~~l~~l~~~~~~~~~~  320 (365)
                      .||+++++|++|+.+|+++|+++|+++++||++|.+|..+|+|++|+.+|+++++++|++..++..|..+....+...++
T Consensus       238 ~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~a~~~~g~~~~A~~~l~~al~l~p~~~~a~~~L~~l~~~~~~~~~~  317 (338)
T 2if4_A          238 ACLIKLKRYDEAIGHCNIVLTEEEKNPKALFRRGKAKAELGQMDSARDDFRKAQKYAPDDKAIRRELRALAEQEKALYQK  317 (338)
T ss_dssp             HHHHTTTCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHTTC-------------------------
T ss_pred             HHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999998888888899


Q ss_pred             HHHHHhcccCCCCCcccc
Q 017811          321 QKEIYKGIFGPRPEPKQK  338 (365)
Q Consensus       321 ~k~~y~kmf~~~~~~~~~  338 (365)
                      ++.+|++||+..|...++
T Consensus       318 a~~~~~~~l~~~p~~~~~  335 (338)
T 2if4_A          318 QKEMYKGIFKGKDEGGAK  335 (338)
T ss_dssp             ------------------
T ss_pred             HHHHHHHhhCCCCCCCCC
Confidence            999999999999876654

>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A

Probab=100.00  E-value=2.7e-43  Score=346.56  Aligned_cols=282  Identities=28%  Similarity=0.472  Sum_probs=221.5

Q ss_pred             eCCCeEEEEEecCCCCC-CCCCCEEEEEEEEEEcCCCeeeccCcCCCCcceeecCCCCchhhhHHHHHhcCCcCcEEEEE
Q 017811           50 LHEKVTKQIIKEGHGQK-PSKYSTCFLHYRAWAESTRHKFDDTWLEQQPLEMVLGKEKKEMTGLAIGVSSMKAGEHALLH  128 (365)
Q Consensus        50 ~~~gv~k~v~~~G~g~~-p~~g~~v~v~y~~~~~~~g~~fd~s~~~~~p~~f~lg~~~~~i~g~e~~l~~Mk~GE~~~~~  128 (365)
                      +++||.|+|+++|+|.. |..||.|+|||++++.+ |++||+|+.++.|++|.+|.+ ++|+||+.+|.+|++||++.|+
T Consensus        29 ~~~g~~~~~~~~G~g~~~~~~gd~v~v~y~~~~~~-g~~~dss~~~~~p~~~~~g~~-~~i~g~~~~l~~m~~Ge~~~~~  106 (457)
T 1kt0_A           29 KDRGVLKIVKRVGNGEETPMIGDKVYVHYKGKLSN-GKKFDSSHDRNEPFVFSLGKG-QVIKAWDIGVATMKRGEICHLL  106 (457)
T ss_dssp             ----CEEEC--------CCCBTCEEEEEEEEEC------CBC------CEEEETTST-TSCHHHHHHHTTCCTTCEEEEE
T ss_pred             CCCcEEEEEEECCCCCCCCCCCCEEEEEEEEEECC-CCEEeccCCCCCCeEEEeCCc-chhhHHHHHHhhCCCCCEEEEE
Confidence            46899999999999995 99999999999999866 999999988888999999999 8999999999999999999999


Q ss_pred             eccccccCCCCCCCCCCCCCCCcEEEEEEEEeeecCc----------------------c--------------------
Q 017811          129 VGWELGYGKEGSFSFPNVSPMADLVYEVVLIGFDETK----------------------E--------------------  166 (365)
Q Consensus       129 i~~~~~yg~~g~~~~~~ip~~~~l~~~iel~~~~~~~----------------------~--------------------  166 (365)
                      |||.++||..|.  ++.|||+++++|+|+|+++....                      .                    
T Consensus       107 i~~~~~yg~~g~--~~~i~~~~~l~~~v~l~~~~~~~~~~dg~~~k~i~~~g~~~~~p~~g~~V~v~y~g~~~g~~f~~~  184 (457)
T 1kt0_A          107 CKPEYAYGSAGS--LPKIPSNATLFFEIELLDFKGEDLFEDGGIIRRTKRKGEGYSNPNEGATVEIHLEGRCGGRMFDCR  184 (457)
T ss_dssp             ECGGGTTTTTCB--TTTBCTTCCEEEEEEEEEEECEETTSSSSEEEEEEECCBCSCCCCTTCEEEEEEEEEETTEEEEEE
T ss_pred             EChHHhccccCC--CCCCCCCCcEEEEEeeceeecccccCCcceEEEEEecCCCCCCCCCCCEEEEEEEEEeCCeEEecC
Confidence            999999999887  57899999999999998765310                      0                    


Q ss_pred             --------------------------------------------------------------------cccCCCCCHHHH
Q 017811          167 --------------------------------------------------------------------GKARSDMTVEER  178 (365)
Q Consensus       167 --------------------------------------------------------------------~~~~~~~~~~e~  178 (365)
                                                                                          +...|.+.....
T Consensus       185 ~~~f~~g~g~~~~v~~~~e~al~~~~~ge~~~l~i~P~~ay~~~g~~~~~ip~~~~l~y~~~l~~~~~A~~~~~~~~~~~  264 (457)
T 1kt0_A          185 DVAFTVGEGEDHDIPIGIDKALEKMQREEQCILYLGPRYGFGEAGKPKFGIEPNAELIYEVTLKSFEKAKESWEMDTKEK  264 (457)
T ss_dssp             EEEEETTCGGGGTCCHHHHHHHTTCCBTCEEEEEECGGGTTCSSCBGGGTBCTTCCEEEEEEEEEEECCCCGGGSCHHHH
T ss_pred             ceEEEeCCCccccCChHHHHHHHhCCCCCEEEEEECcccccCCCCCcccCCCCCCEEEEEhhhhhcccCcchhhcCHHHH
Confidence                                                                                000134556778


Q ss_pred             HHHHHHhhhhhhhhhhhhhHHHHHHHHHHHHHhhccchhhhhhhhHHHHHHHhhchhhhHHHHHHHHhcCHHHHHHHHHH
Q 017811          179 IGAADRRKMDGNALFKEEKLEEAMQQYEMAIAYMGDDFMFQLFGKYRDMALAVKNPCHLNMAACLLKLKRYEEAIGQCSL  258 (365)
Q Consensus       179 ~~~a~~~k~~G~~~~~~~~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~kl~~~~~A~~~~~~  258 (365)
                      ...+..++.+|+.+++.|+|.+|+..|.+||.+.|.+..+  .++.......+...+|+|+|.||+++++|++|+.+|++
T Consensus       265 ~~~a~~~~~~G~~~~~~g~~~~A~~~y~~Al~~~p~~~~~--~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~  342 (457)
T 1kt0_A          265 LEQAAIVKEKGTVYFKGGKYMQAVIQYGKIVSWLEMEYGL--SEKESKASESFLLAAFLNLAMCYLKLREYTKAVECCDK  342 (457)
T ss_dssp             HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTCCSC--CHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhcccccC--ChHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHH
Confidence            8899999999999999999999999999999999986432  12334455666778999999999999999999999999


Q ss_pred             HHhCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCCCccc
Q 017811          259 VLGEDENNVKALFRRGKARAELGQTDAAREDFLKAGKFAPEDKSIARELRLLAEHEKAVYKKQKEIYKGIFGPRPEPKQ  337 (365)
Q Consensus       259 aL~~~p~n~ka~~~~g~a~~~l~~~~~A~~~l~~al~l~P~n~~~~~~l~~l~~~~~~~~~~~k~~y~kmf~~~~~~~~  337 (365)
                      +|+++|+++++||++|.+|..+|+|++|+.+|++|++++|++..+...+..+...++++.++++.+|++||+.......
T Consensus       343 al~~~p~~~~a~~~~g~a~~~~g~~~~A~~~~~~al~l~P~~~~a~~~l~~~~~~~~~~~~a~~~~~~~~f~k~~~~d~  421 (457)
T 1kt0_A          343 ALGLDSANEKGLYRRGEAQLLMNEFESAKGDFEKVLEVNPQNKAARLQISMCQKKAKEHNERDRRIYANMFKKFAEQDA  421 (457)
T ss_dssp             HHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC----CHHHHHHHHHHHHHHHHHHHHHHHHHC---------
T ss_pred             HHhcCCccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhccc
Confidence            9999999999999999999999999999999999999999999999999999999999999999999999987665443

>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A

Probab=100.00  E-value=5.1e-40  Score=310.64  Aligned_cols=271  Identities=27%  Similarity=0.441  Sum_probs=245.9

Q ss_pred             eeCCCeEEEEEecCCCC-CCCCCCEEEEEEEEEEcCCCeeeccCcCCCCcceeecCCCCc---hhhhHHHHHhcCCcCcE
Q 017811           49 VLHEKVTKQIIKEGHGQ-KPSKYSTCFLHYRAWAESTRHKFDDTWLEQQPLEMVLGKEKK---EMTGLAIGVSSMKAGEH  124 (365)
Q Consensus        49 ~~~~gv~k~v~~~G~g~-~p~~g~~v~v~y~~~~~~~g~~fd~s~~~~~p~~f~lg~~~~---~i~g~e~~l~~Mk~GE~  124 (365)
                      ..++||.|+|+++|.|. .|..|+.|+|||++++ + |++||++     |++|.+|.| .   +++||+.||..|++||+
T Consensus        22 ~~~~~~~~~~~~~g~g~~~p~~~~~v~v~y~g~~-~-g~~fd~~-----~~~f~lG~g-~~~~~~~~~e~al~~~~~Ge~   93 (336)
T 1p5q_A           22 EEDGGIIRRIQTRGEGYAKPNEGAIVEVALEGYY-K-DKLFDQR-----ELRFEIGEG-ENLDLPYGLERAIQRMEKGEH   93 (336)
T ss_dssp             CCTTSEEEEEEECCCCSCCCCTTCEEEEEEEEEE-T-TEEEEEE-----EEEEETTCG-GGGTCCHHHHHHHTTCCTTCE
T ss_pred             cCCCcEEEEEEeCCCCCCCCCCCCeEEEEEEEEE-C-CEEEecC-----CeEEEeCCC-CccccchHHHHHHhcCCCCCe
Confidence            34678999999999998 8999999999999998 5 8999986     899999988 5   58999999999999999


Q ss_pred             EEEEeccccccCCCCCCCCCCCCCCCcEEEEEEEEeeecCcccccCCCCCHHHHHHHHHHhhhhhhhhhhhhhHHHHHHH
Q 017811          125 ALLHVGWELGYGKEGSFSFPNVSPMADLVYEVVLIGFDETKEGKARSDMTVEERIGAADRRKMDGNALFKEEKLEEAMQQ  204 (365)
Q Consensus       125 ~~~~i~~~~~yg~~g~~~~~~ip~~~~l~~~iel~~~~~~~~~~~~~~~~~~e~~~~a~~~k~~G~~~~~~~~y~~A~~~  204 (365)
                      +.|.|+|.++||..|.. ...||+++++.|++.|.++.....   .+.+..+.....+..+...|+.+++.|+|.+|+..
T Consensus        94 ~~l~i~p~~ayg~~g~~-~~~i~~~~~l~f~~~L~~~~~A~~---~~~~a~~~~p~~a~~~~~~g~~~~~~g~~~~A~~~  169 (336)
T 1p5q_A           94 SIVYLKPSYAFGSVGKE-KFQIPPNAELKYELHLKSFEKAKE---SWEMNSEEKLEQSTIVKERGTVYFKEGKYKQALLQ  169 (336)
T ss_dssp             EEEEECTTTTTTTTCBG-GGTBCSSCCEEEEEEEEEEECCCC---GGGCCHHHHHHHHHHHHHHHHHHHHHTCHHHHHHH
T ss_pred             EEEEECCccccCcCCCC-ccCCCCCCeEEEEEEEeecccccc---hhcCCHHHHHHHHHHHHHHHHHHHHCCCHHHHHHH
Confidence            99999999999999863 126999999999999999987654   78888888999999999999999999999999999


Q ss_pred             HHHHHHhhccchhhhhhhhHHHHHHHhhchhhhHHHHHHHHhcCHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHcCCHH
Q 017811          205 YEMAIAYMGDDFMFQLFGKYRDMALAVKNPCHLNMAACLLKLKRYEEAIGQCSLVLGEDENNVKALFRRGKARAELGQTD  284 (365)
Q Consensus       205 y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~kl~~~~~A~~~~~~aL~~~p~n~ka~~~~g~a~~~l~~~~  284 (365)
                      |++|+.+.|.+..+.  .+.......+...+++|+|.||+++|+|++|+.+|+++|+++|+++++|+++|.+|..+|+|+
T Consensus       170 y~~Al~~~p~~~~~~--~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~  247 (336)
T 1p5q_A          170 YKKIVSWLEYESSFS--NEEAQKAQALRLASHLNLAMCHLKLQAFSAAIESCNKALELDSNNEKGLSRRGEAHLAVNDFE  247 (336)
T ss_dssp             HHHHHHHTTTCCCCC--SHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHH
T ss_pred             HHHHHHHhhccccCC--hHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCCHH
Confidence            999999999864321  233344556667889999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHhhCCCcHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCC
Q 017811          285 AAREDFLKAGKFAPEDKSIARELRLLAEHEKAVYKKQKEIYKGIFGPRP  333 (365)
Q Consensus       285 ~A~~~l~~al~l~P~n~~~~~~l~~l~~~~~~~~~~~k~~y~kmf~~~~  333 (365)
                      +|+.+|+++++++|++..+...+..+...++++.++++.+|++||+...
T Consensus       248 ~A~~~~~~al~l~P~~~~a~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~  296 (336)
T 1p5q_A          248 LARADFQKVLQLYPNNKAAKTQLAVCQQRIRRQLAREKKLYANMFERLA  296 (336)
T ss_dssp             HHHHHHHHHHHHCSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence            9999999999999999999999999999999999999999999986544

>2f4e_A ATFKBP42; FKBP-like, alpha-beta, signaling protein; 2.32A {Arabidopsis thaliana}

Probab=99.97  E-value=4e-31  Score=226.33  Aligned_cols=180  Identities=74%  Similarity=1.178  Sum_probs=121.0

Q ss_pred             CcccCCCCCCCCCCCCCCcchhhccccccCCCCCCCCCCCCCCCCceeeeCCCeEEEEEecCCCCCCCCCCEEEEEEEEE
Q 017811            1 MEEVDGEPKSQAPGEVGESEIVTEDAAFVRGEPPQDGDGPPKVDSEVEVLHEKVTKQIIKEGHGQKPSKYSTCFLHYRAW   80 (365)
Q Consensus         1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gv~k~v~~~G~g~~p~~g~~v~v~y~~~   80 (365)
                      |+|+++...   ....++.+.+.+..++....+....+.|++...++.++++||+|+++++|.|..|..||.|+|||+++
T Consensus         1 ~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~gl~~~vl~~G~G~~~~~Gd~V~v~Y~g~   77 (180)
T 2f4e_A            1 MDESLEHQT---QTHDQESEIVTEGSAVVHSEPSQEGNVPPKVDSEAEVLDEKVSKQIIKEGHGSKPSKYSTCFLHYRAW   77 (180)
T ss_dssp             ------------------------------------CCSCCCCCSCCEEEETTEEEEEEECCBSCCBCTTCEEEEEEEEE
T ss_pred             ChhHhhhhh---ccCCccchhhhhhccccccCCCCcccCCcccCCCcEECCCceEEEEEeCCCCCCCCCCCEEEEEEEEE
Confidence            677777754   55667788999999999999999999999999999999999999999999999999999999999999


Q ss_pred             EcCCCeeeccCcCCCCcceeecCCCCchhhhHHHHHhcCCcCcEEEEEeccccccCCCCCCCCCCCCCCCcEEEEEEEEe
Q 017811           81 AESTRHKFDDTWLEQQPLEMVLGKEKKEMTGLAIGVSSMKAGEHALLHVGWELGYGKEGSFSFPNVSPMADLVYEVVLIG  160 (365)
Q Consensus        81 ~~~~g~~fd~s~~~~~p~~f~lg~~~~~i~g~e~~l~~Mk~GE~~~~~i~~~~~yg~~g~~~~~~ip~~~~l~~~iel~~  160 (365)
                      +.++|++||+++.++.|+.|.+|.+.++|+||+.+|.+|++||++.|.|||.++||..+...++.||||++|+|+|+|++
T Consensus        78 l~~dG~~fdss~~~~~p~~f~lG~g~~vi~G~eeaL~gMk~Ge~~~v~iPp~~aYG~~g~~~~~~Ip~~s~l~F~VeL~~  157 (180)
T 2f4e_A           78 TKNSQHKFEDTWHEQQPIELVLGKEKKELAGLAIGVASMKSGERALVHVGWELAYGKEGNFSFPNVPPMADLLYEVEVIG  157 (180)
T ss_dssp             ETTTCCEEEETTTTTCCEEEETTSCCGGGHHHHHHHTTCCBTCEEEEEECGGGTTTTTCBSSSSCBCTTCCEEEEEEEEE
T ss_pred             ECCCCcEEeccCccCCCEEEEeCCCCchhHHHHHHHhCCCCCCEEEEEECchHhCCcCCcccCCCcCCCCeEEEEEEEEE
Confidence            98669999999888899999999863489999999999999999999999999999988532367999999999999999


Q ss_pred             eecCcccccCCCCCHHHHHHHHH
Q 017811          161 FDETKEGKARSDMTVEERIGAAD  183 (365)
Q Consensus       161 ~~~~~~~~~~~~~~~~e~~~~a~  183 (365)
                      +....+.+..|.|+.++++..|.
T Consensus       158 v~~~~e~~~~~~mt~eErl~~A~  180 (180)
T 2f4e_A          158 FDETKEGKARSDMTVEERIGAAD  180 (180)
T ss_dssp             ESCBCCC----------------
T ss_pred             EecCccccccccCCHHHHHhhcC
Confidence            99887767789999999988763

>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A

Probab=99.93  E-value=2.5e-25  Score=218.52  Aligned_cols=214  Identities=17%  Similarity=0.254  Sum_probs=177.4

Q ss_pred             CCCeEEEEEecCCCC-CCCCCCEEEEEEEEEEcCCCeeeccCcCCCCcceeecCCCC--chhhhHHHHHhcCCcCcEEEE
Q 017811           51 HEKVTKQIIKEGHGQ-KPSKYSTCFLHYRAWAESTRHKFDDTWLEQQPLEMVLGKEK--KEMTGLAIGVSSMKAGEHALL  127 (365)
Q Consensus        51 ~~gv~k~v~~~G~g~-~p~~g~~v~v~y~~~~~~~g~~fd~s~~~~~p~~f~lg~~~--~~i~g~e~~l~~Mk~GE~~~~  127 (365)
                      ++++.++++++|.|. .|..|+.|+|||++++ + |++||++     +++|.+|.|.  .+++||+.||..|+.||++.|
T Consensus       145 dg~~~k~i~~~g~~~~~p~~g~~V~v~y~g~~-~-g~~f~~~-----~~~f~~g~g~~~~v~~~~e~al~~~~~ge~~~l  217 (457)
T 1kt0_A          145 DGGIIRRTKRKGEGYSNPNEGATVEIHLEGRC-G-GRMFDCR-----DVAFTVGEGEDHDIPIGIDKALEKMQREEQCIL  217 (457)
T ss_dssp             SSSEEEEEEECCBCSCCCCTTCEEEEEEEEEE-T-TEEEEEE-----EEEEETTCGGGGTCCHHHHHHHTTCCBTCEEEE
T ss_pred             CcceEEEEEecCCCCCCCCCCCEEEEEEEEEe-C-CeEEecC-----ceEEEeCCCccccCChHHHHHHHhCCCCCEEEE
Confidence            457999999999997 8999999999999998 5 8999973     6899999762  389999999999999999999


Q ss_pred             EeccccccCCCCCCCCCCCCCCCcEEEEEEEEeeecCcccccC-------------------------------------
Q 017811          128 HVGWELGYGKEGSFSFPNVSPMADLVYEVVLIGFDETKEGKAR-------------------------------------  170 (365)
Q Consensus       128 ~i~~~~~yg~~g~~~~~~ip~~~~l~~~iel~~~~~~~~~~~~-------------------------------------  170 (365)
                      .++|.++||..|... ..|||++.+.|.+.+..+.+.......                                     
T Consensus       218 ~i~P~~ay~~~g~~~-~~ip~~~~l~y~~~l~~~~~A~~~~~~~~~~~~~~a~~~~~~G~~~~~~g~~~~A~~~y~~Al~  296 (457)
T 1kt0_A          218 YLGPRYGFGEAGKPK-FGIEPNAELIYEVTLKSFEKAKESWEMDTKEKLEQAAIVKEKGTVYFKGGKYMQAVIQYGKIVS  296 (457)
T ss_dssp             EECGGGTTCSSCBGG-GTBCTTCCEEEEEEEEEEECCCCGGGSCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             EECcccccCCCCCcc-cCCCCCCEEEEEhhhhhcccCcchhhcCHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHH
Confidence            999999999998632 369999999999999988776532100                                     


Q ss_pred             ---C--CCCHH----HHHHHHHHhhhhhhhhhhhhhHHHHHHHHHHHHHhhccchhhhhhhhHHHHHHHhhchhhhHHHH
Q 017811          171 ---S--DMTVE----ERIGAADRRKMDGNALFKEEKLEEAMQQYEMAIAYMGDDFMFQLFGKYRDMALAVKNPCHLNMAA  241 (365)
Q Consensus       171 ---~--~~~~~----e~~~~a~~~k~~G~~~~~~~~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~  241 (365)
                         .  .+..+    .....+..+..+|..+++.++|.+|+..|++||.+.|.+.                 .+|+++|.
T Consensus       297 ~~p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~p~~~-----------------~a~~~~g~  359 (457)
T 1kt0_A          297 WLEMEYGLSEKESKASESFLLAAFLNLAMCYLKLREYTKAVECCDKALGLDSANE-----------------KGLYRRGE  359 (457)
T ss_dssp             HHTTCCSCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCH-----------------HHHHHHHH
T ss_pred             HhcccccCChHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCccH-----------------HHHHHHHH
Confidence               0  00000    0111246677899999999999999999999999999863                 35999999


Q ss_pred             HHHHhcCHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHcCCHHHHHHH
Q 017811          242 CLLKLKRYEEAIGQCSLVLGEDENNVKALFRRGKARAELGQTDAARED  289 (365)
Q Consensus       242 ~~~kl~~~~~A~~~~~~aL~~~p~n~ka~~~~g~a~~~l~~~~~A~~~  289 (365)
                      ||+.+++|++|+.+|+++|+++|++..+++.++.++..++++++|...
T Consensus       360 a~~~~g~~~~A~~~~~~al~l~P~~~~a~~~l~~~~~~~~~~~~a~~~  407 (457)
T 1kt0_A          360 AQLLMNEFESAKGDFEKVLEVNPQNKAARLQISMCQKKAKEHNERDRR  407 (457)
T ss_dssp             HHHHTTCHHHHHHHHHHHHTTC----CHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence            999999999999999999999999999999999999999999988754

>2lkn_A AH receptor-interacting protein; FKBP-type domain, immunophilin homolog, protein binding; NMR {Homo sapiens}

Probab=99.93  E-value=2e-26  Score=192.56  Aligned_cols=116  Identities=18%  Similarity=0.316  Sum_probs=99.7

Q ss_pred             eeeCCCeEEEEEecCCCCCC--CCCCEEEEEEEEEEcC-CCeeeccCcCCCCcceeecCCCCchhhhHHHHHhcCCcCcE
Q 017811           48 EVLHEKVTKQIIKEGHGQKP--SKYSTCFLHYRAWAES-TRHKFDDTWLEQQPLEMVLGKEKKEMTGLAIGVSSMKAGEH  124 (365)
Q Consensus        48 ~~~~~gv~k~v~~~G~g~~p--~~g~~v~v~y~~~~~~-~g~~fd~s~~~~~p~~f~lg~~~~~i~g~e~~l~~Mk~GE~  124 (365)
                      .++++||+|+|+++|+|..|  ..|+.|+|||+|++.+ +|++||||+.+++|++|.||.+ +||+||+.||.+|++||+
T Consensus         6 ~~~~~Gv~~~vl~~G~G~~p~~~~G~~V~vhY~g~l~d~~G~~FDsS~~rg~P~~f~lG~g-~vI~Gwd~gl~~M~~Ge~   84 (165)
T 2lkn_A            6 RLREDGIQKRVIQEGRGELPDFQDGTKATFHYRTLHSDDEGTVLDDSRARGKPMELIIGKK-FKLPVWETIVCTMREGEI   84 (165)
T ss_dssp             HHHTTSCCCCEEECCSSCCCCCCTTCEEEEECEEECSSSSCCEEEESTTTTCCEEEESSSS-CSCSHHHHHHTTCCTTCE
T ss_pred             cccCCCeEEEEEECCcCCCCCCCCCCEEEEEEEEEEeCCCccEEEecccCCCCEEEEecCC-CccHHHHHHHhcCccCce
Confidence            45689999999999999865  5799999999999863 4899999999999999999999 899999999999999999


Q ss_pred             EEEEeccccccCCC--------CCCCCCC-----------------------------CCCCCcEEEEEEEEeeecCcc
Q 017811          125 ALLHVGWELGYGKE--------GSFSFPN-----------------------------VSPMADLVYEVVLIGFDETKE  166 (365)
Q Consensus       125 ~~~~i~~~~~yg~~--------g~~~~~~-----------------------------ip~~~~l~~~iel~~~~~~~~  166 (365)
                      ++|+|||+++||..        ..  ...                             ++++++|+|+|||++++.+.+
T Consensus        85 ~~~~ipp~laYG~p~v~~~~r~~~--~~~~p~~~~~~~~g~~~~~~~~~~g~~d~~~li~~p~~L~FeIELl~Ve~P~e  161 (165)
T 2lkn_A           85 AQFLCDIKHVVLYPLVAKSLRNIA--VGKDPLEGQRHCCGVAQMREHSSLGHADLDALQQNPQPLIFHMEMLKVESPGT  161 (165)
T ss_dssp             EEEECCHHHHSSHHHHHHHHTTGG--GSSTTTTTCSCCSSCCSCCCCCCCCCSTTTHHHHSCCCCEEEEEEEEEECTTT
T ss_pred             EEEEECHHHhcCCcchhhhhhhcc--ccCCCccccccceeeeeccccccccccccccccCCCCCeEEEEEEEEEcCCcc
Confidence            99999999999920        00  011                             234578999999999998765

>1jvw_A Macrophage infectivity potentiator; chagas disease, X-RAY rotamase, isomeras; 1.70A {Trypanosoma cruzi} SCOP: d.26.1.1

Probab=99.93  E-value=3e-25  Score=187.00  Aligned_cols=125  Identities=22%  Similarity=0.366  Sum_probs=112.0

Q ss_pred             ceeeeCCCeEEEEEecCCCCC-CCCCCEEEEEEEEEEcCCCeeeccCcCCCCcceeecCCCCchhhhHHHHHhcCCcCcE
Q 017811           46 EVEVLHEKVTKQIIKEGHGQK-PSKYSTCFLHYRAWAESTRHKFDDTWLEQQPLEMVLGKEKKEMTGLAIGVSSMKAGEH  124 (365)
Q Consensus        46 ~~~~~~~gv~k~v~~~G~g~~-p~~g~~v~v~y~~~~~~~g~~fd~s~~~~~p~~f~lg~~~~~i~g~e~~l~~Mk~GE~  124 (365)
                      .+.++++||+|+++++|+|.. |..||.|+|||++++.+ |++||+++.++.|++|.+|   ++|+||+.+|.+|++||+
T Consensus        31 ~~~~~~sGl~~~vl~~G~G~~~~~~gd~V~v~Y~g~l~d-G~~fdss~~~g~p~~f~lg---~vI~G~eeaL~gMk~Ge~  106 (167)
T 1jvw_A           31 DAVKLPSGLVFQRIARGSGKRAPAIDDKCEVHYTGRLRD-GTVFDSSRERGKPTTFRPN---EVIKGWTEALQLMREGDR  106 (167)
T ss_dssp             TEEECTTSCEEEEEECCCCSBCCCTTCCEEEEEEEECTT-SCEEEEHHHHTSCEEECGG---GSCHHHHHHHTTCCTTCE
T ss_pred             CcEECCCCEEEEEEEcCCCCcCCCCCCEEEEEEEEEECC-CCEEeeccccCCCEEEEeC---chhHHHHHHHcCCCCCCE
Confidence            478899999999999999997 99999999999999887 9999999877789999996   789999999999999999


Q ss_pred             EEEEeccccccCCCCCCCCCCCCCCCcEEEEEEEEeeecCcccccCCCCCHHHHHHH
Q 017811          125 ALLHVGWELGYGKEGSFSFPNVSPMADLVYEVVLIGFDETKEGKARSDMTVEERIGA  181 (365)
Q Consensus       125 ~~~~i~~~~~yg~~g~~~~~~ip~~~~l~~~iel~~~~~~~~~~~~~~~~~~e~~~~  181 (365)
                      ++|.|||.++||..|.  ++.||||++|+|+|+|+++.+.     .+.++.++..+.
T Consensus       107 ~~~~Ip~~laYG~~g~--~~~Ipp~s~LiF~VeL~~i~~~-----~~~~~~~e~~~~  156 (167)
T 1jvw_A          107 WRLFIPYDLAYGVTGG--GGMIPPYSPLEFDVELISIKDG-----GKGRTAEEVDEI  156 (167)
T ss_dssp             EEEEECGGGTTTTTCS--SSSSCTTCCEEEEEEEEEEGGG-----CCSCBHHHHHHH
T ss_pred             EEEEECchhhCCCCCC--CCCcCCCCeEEEEEEEEEEEcC-----CCCCCHHHHHHH
Confidence            9999999999999987  4689999999999999999854     456666665333

>2jwx_A FKBP38NTD, FK506-binding protein 8 variant; apoptosis, beta barrel, central helix, with flexible N-terminal extension, isomerase; NMR {Homo sapiens}

Probab=99.93  E-value=7e-25  Score=182.70  Aligned_cols=138  Identities=21%  Similarity=0.336  Sum_probs=121.1

Q ss_pred             cchhhccccccCCCCCCCCCCCCCCCCceeeeCCCe-EEEEEecCCCC--CCCCCCEEEEEEEEEEcCCCeeeccCcCCC
Q 017811           19 SEIVTEDAAFVRGEPPQDGDGPPKVDSEVEVLHEKV-TKQIIKEGHGQ--KPSKYSTCFLHYRAWAESTRHKFDDTWLEQ   95 (365)
Q Consensus        19 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gv-~k~v~~~G~g~--~p~~g~~v~v~y~~~~~~~g~~fd~s~~~~   95 (365)
                      ......+.+|+..++......+. ..++.+++++|+ +|+++++|+|.  .|..||.|+|||++++.+ |++||++    
T Consensus        10 ~~~~~~~~~fl~~~~~~~gv~~~-~~~~~~~~~sG~v~~~vl~~G~G~~~~p~~gd~V~v~Y~g~l~d-G~~fds~----   83 (157)
T 2jwx_A           10 EQPGALAREFLAAMEPEPAPAPA-PEEWLDILGNGLLRKKTLVPGPPGSSRPVKGQVVTVHLQTSLEN-GTRVQEE----   83 (157)
T ss_dssp             SSSSSSSCSSCSCCSSCCCCCCC-CCSCEESSSSSSEEEEEEECCSTTSCCCCTTEEEEEEEEEECTT-SCEEEEE----
T ss_pred             ccchHHHHHHHHHhccCCCcccc-ccccceECCCCCEEEEEEEccCCCccCCCCCCEEEEEEEEEECC-CCEeecC----
Confidence            33445578899999888765544 456788999996 89999999997  899999999999999877 8999983    


Q ss_pred             CcceeecCCCCchhhhHHHHHhcCCcCcEEEEEeccccccCCCC-CCCCCCCCCCCcEEEEEEEEeeecCc
Q 017811           96 QPLEMVLGKEKKEMTGLAIGVSSMKAGEHALLHVGWELGYGKEG-SFSFPNVSPMADLVYEVVLIGFDETK  165 (365)
Q Consensus        96 ~p~~f~lg~~~~~i~g~e~~l~~Mk~GE~~~~~i~~~~~yg~~g-~~~~~~ip~~~~l~~~iel~~~~~~~  165 (365)
                      .|++|.+|.+ ++|+||+.+|.+|++||+++|.|||.++||..+ .  .+.||||++|+|+|+|+++....
T Consensus        84 ~p~~f~lG~g-~vi~G~eeaL~gMk~Ge~~~v~IP~~~aYG~~g~~--~~~IPp~stLiF~VeL~~i~~~~  151 (157)
T 2jwx_A           84 PELVFTLGDC-DVIQALDLSVPLMDVGETAMVTADSKYCYGPQGSR--SPYIPPHAALCLEVTLKTAVDLE  151 (157)
T ss_dssp             EEEEEETTTT-SSCHHHHHHTTTSCTTCEEEEEECGGGTTTTTCCS--SSCCCTTCCEEEEEEEEEEEECS
T ss_pred             CCEEEEeCCC-ChhHHHHHHHcCCCCCCEEEEEECchhcCCccccc--CCCcCCCCeEEEEEEEEEEEccc
Confidence            7999999999 899999999999999999999999999999988 5  36799999999999999998754

>1yat_A FK506 binding protein; HET: FK5; 2.50A {Saccharomyces cerevisiae} SCOP: d.26.1.1

Probab=99.92  E-value=7.3e-25  Score=173.79  Aligned_cols=111  Identities=26%  Similarity=0.453  Sum_probs=102.9

Q ss_pred             eeeCCCeEEEEEecCCCCC-CCCCCEEEEEEEEEEcCCCeeeccCcCCCCcceeecCCCCchhhhHHHHHhcCCcCcEEE
Q 017811           48 EVLHEKVTKQIIKEGHGQK-PSKYSTCFLHYRAWAESTRHKFDDTWLEQQPLEMVLGKEKKEMTGLAIGVSSMKAGEHAL  126 (365)
Q Consensus        48 ~~~~~gv~k~v~~~G~g~~-p~~g~~v~v~y~~~~~~~g~~fd~s~~~~~p~~f~lg~~~~~i~g~e~~l~~Mk~GE~~~  126 (365)
                      +++++|+.++++++|+|.. |..||.|+|||++++.+ |++||+++.++.|+.|.+|.+ ++|+||+.+|.+|++||++.
T Consensus         2 ~~~~~g~~~~~~~~G~g~~~~~~gd~V~v~y~~~~~d-G~~~d~s~~~~~p~~f~lG~~-~~i~g~e~~l~gm~~Ge~~~   79 (113)
T 1yat_A            2 EVIEGNVKIDRISPGDGATFPKTGDLVTIHYTGTLEN-GQKFDSSVDRGSPFQCNIGVG-QVIKGWDVGIPKLSVGEKAR   79 (113)
T ss_dssp             EECGGGCEEEEEECCCSSCCCCTTCEEEEEEEEEETT-SCEEEESTTTTCCEEEETTSS-SSCHHHHHHGGGCCTTCEEE
T ss_pred             CCCCCCeEEEEEECCCCcccCCCCCEEEEEEEEEECC-CCEEEecCCCCCcEEEEeCCC-CccHHHHHHHhCCCCCCEEE
Confidence            4677899999999999996 99999999999999976 999999987778999999999 89999999999999999999


Q ss_pred             EEeccccccCCCCCCCCCCCCCCCcEEEEEEEEeee
Q 017811          127 LHVGWELGYGKEGSFSFPNVSPMADLVYEVVLIGFD  162 (365)
Q Consensus       127 ~~i~~~~~yg~~g~~~~~~ip~~~~l~~~iel~~~~  162 (365)
                      |.|||.++||+.+.  ++.||||++|+|+|+|+++.
T Consensus        80 v~ip~~~ayG~~~~--~~~Ip~~~~l~f~vel~~ik  113 (113)
T 1yat_A           80 LTIPGPYAYGPRGF--PGLIPPNSTLVFDVELLKVN  113 (113)
T ss_dssp             EEECGGGTTTTTCB--TTTBCTTCCEEEEEEEEEEC
T ss_pred             EEECHHHCcCCCCC--CCCcCCCCeEEEEEEEEEeC
Confidence            99999999999886  35799999999999999863

>3o5e_A Peptidyl-prolyl CIS-trans isomerase FKBP5; FK-506 binding domain, HSP90 cochaperone, immunophiline, PEP prolyl isomerase; 1.60A {Homo sapiens} PDB: 3o5f_A

Probab=99.92  E-value=5.8e-25  Score=181.58  Aligned_cols=108  Identities=31%  Similarity=0.545  Sum_probs=102.7

Q ss_pred             CCCeEEEEEecCCCC-CCCCCCEEEEEEEEEEcCCCeeeccCcCCCCcceeecCCCCchhhhHHHHHhcCCcCcEEEEEe
Q 017811           51 HEKVTKQIIKEGHGQ-KPSKYSTCFLHYRAWAESTRHKFDDTWLEQQPLEMVLGKEKKEMTGLAIGVSSMKAGEHALLHV  129 (365)
Q Consensus        51 ~~gv~k~v~~~G~g~-~p~~g~~v~v~y~~~~~~~g~~fd~s~~~~~p~~f~lg~~~~~i~g~e~~l~~Mk~GE~~~~~i  129 (365)
                      ++||+|+++++|+|. .|..||.|+|||++++.+ |++||+++.++.|+.|.+|.+ ++|+||+.+|.+|++||++.|.|
T Consensus        34 d~gv~~~i~~~G~G~~~p~~gd~V~v~Y~g~~~d-G~~fdss~~~~~p~~f~lG~g-~~i~G~e~~l~gm~~Ge~~~v~i  111 (144)
T 3o5e_A           34 DRGVLKIVKRVGNGEETPMIGDKVYVHYKGKLSN-GKKFDSSHDRNEPFVFSLGKG-QVIKAWDIGVATMKKGEICHLLC  111 (144)
T ss_dssp             SSSEEEEEEECCBSSCCCCTTCEEEEEEEEECTT-SCEEEESGGGTSCEEEETTSS-SSCHHHHHHHTTCCBTCEEEEEE
T ss_pred             CCeEEEEEEECCCCCccCCCCCEEEEEEEEEECC-CCEEEeecccCCCeEEEeCCC-cccHHHHHHHhCCCCCCEEEEEE
Confidence            679999999999998 899999999999999987 999999988889999999999 89999999999999999999999


Q ss_pred             ccccccCCCCCCCCCCCCCCCcEEEEEEEEeee
Q 017811          130 GWELGYGKEGSFSFPNVSPMADLVYEVVLIGFD  162 (365)
Q Consensus       130 ~~~~~yg~~g~~~~~~ip~~~~l~~~iel~~~~  162 (365)
                      ||.++||..|.  ++.||||++|+|+|+|+++.
T Consensus       112 pp~~aYG~~g~--~~~Ipp~~~L~f~VeL~~ik  142 (144)
T 3o5e_A          112 KPEYAYGSAGS--LPKIPSNATLFFEIELLDFK  142 (144)
T ss_dssp             CGGGTTTTTCB--TTTBCTTCCEEEEEEEEEEE
T ss_pred             ChHHCcCCCCC--CCCcCCCCeEEEEEEEEEec
Confidence            99999999987  47899999999999999885

>3oe2_A Peptidyl-prolyl CIS-trans isomerase; FKBP, ppiase, FK506; HET: TAR SRT; 1.60A {Pseudomonas syringae PV} SCOP: d.26.1.0

Probab=99.92  E-value=1.2e-25  Score=196.41  Aligned_cols=125  Identities=24%  Similarity=0.412  Sum_probs=112.1

Q ss_pred             chhhccccccCCCCCCCCCCCCCCCCceeeeCCCeEEEEEecCCCCCCCCCCEEEEEEEEEEcCCCeeeccCcCCCCcce
Q 017811           20 EIVTEDAAFVRGEPPQDGDGPPKVDSEVEVLHEKVTKQIIKEGHGQKPSKYSTCFLHYRAWAESTRHKFDDTWLEQQPLE   99 (365)
Q Consensus        20 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gv~k~v~~~G~g~~p~~g~~v~v~y~~~~~~~g~~fd~s~~~~~p~~   99 (365)
                      +...++.+|+..++...+         +.++++||+|+++++|+|..|..||.|+|||++++.+ |++||+|   +.|++
T Consensus        94 ~~~~~~~~fl~~n~~~~g---------v~~~~sGl~y~vl~~G~G~~p~~gd~V~V~Y~g~l~d-G~vfDss---~~P~~  160 (219)
T 3oe2_A           94 AALKAERTFMAGEKAKPG---------VKELADGILMTELTPGTGPKPDANGRVEVRYVGRLPD-GKIFDQS---TQPQW  160 (219)
T ss_dssp             HHHHHHHHHHHHHHTSTT---------CEECGGGCEEEEEECCCSCCCCTTSEEEEEEEEECTT-SCEEEEC---SSCEE
T ss_pred             HHHHHHHHHHHHhccCCC---------cEECCCCeEEEEEecCCCccCCCCCEEEEEEEEEECC-CCEeecc---CCcEE
Confidence            445556677766666653         7889999999999999999999999999999999987 9999998   78999


Q ss_pred             eecCCCCchhhhHHHHHhcCCcCcEEEEEeccccccCCCCCCCCCCCCCCCcEEEEEEEEeee
Q 017811          100 MVLGKEKKEMTGLAIGVSSMKAGEHALLHVGWELGYGKEGSFSFPNVSPMADLVYEVVLIGFD  162 (365)
Q Consensus       100 f~lg~~~~~i~g~e~~l~~Mk~GE~~~~~i~~~~~yg~~g~~~~~~ip~~~~l~~~iel~~~~  162 (365)
                      |.+|   ++|+||+.+|.+|++|++++|+|||.++||+.|.  ++.||||++|+|+|+|+++.
T Consensus       161 f~lG---~vI~G~eeaL~gMk~Gek~~v~IPp~lAYG~~g~--~~~IPpnstLvFeVeLl~Ik  218 (219)
T 3oe2_A          161 FRLD---SVISGWTSALQNMPTGAKWRLVIPSDQAYGAEGA--GDLIDPFTPLVFEIELIAVS  218 (219)
T ss_dssp             EEGG---GSCHHHHHHHTTCCTTCEEEEEECGGGTTTTTCB--TTTBCTTCCEEEEEEEEEEE
T ss_pred             EEec---chhHHHHHHHhCCCCCCEEEEEECchhcCCCCCC--CCCCCCCCeEEEEEEEEEEe
Confidence            9998   6899999999999999999999999999999987  35699999999999999885

>3kz7_A FK506-binding protein 3; FKPB ppiase rapamycin, isomerase, nucleus, phosphoprotein, R isomerase-inhibitor complex; HET: RAP; 1.95A {Mus musculus} SCOP: d.26.1.1 PDB: 1pbk_A*

Probab=99.92  E-value=7e-25  Score=175.56  Aligned_cols=110  Identities=29%  Similarity=0.412  Sum_probs=100.3

Q ss_pred             eCCCeEEEEEecCCCC-CCCCCCEEEEEEEEEEcCCCeeeccCcCC-------CCcceeecCCCCchhhhHHHHHhcCCc
Q 017811           50 LHEKVTKQIIKEGHGQ-KPSKYSTCFLHYRAWAESTRHKFDDTWLE-------QQPLEMVLGKEKKEMTGLAIGVSSMKA  121 (365)
Q Consensus        50 ~~~gv~k~v~~~G~g~-~p~~g~~v~v~y~~~~~~~g~~fd~s~~~-------~~p~~f~lg~~~~~i~g~e~~l~~Mk~  121 (365)
                      +++||+|+|+++|+|. .|..||.|+|||++++.+ |++||+|+..       +.|+.|.+|.+ ++|+||+.+|.+|++
T Consensus         2 ~p~g~~~~il~~G~g~~~p~~gd~V~v~Y~g~~~d-G~~fdss~~~~~~~~~~~~p~~f~lG~~-~~i~G~e~~l~gm~~   79 (119)
T 3kz7_A            2 GPPKYTKSILKKGDKTNFPKKGDVVHCWYTGTLPD-GTVFDTNIQTSSKKKKNAKPLSFKVGVG-KVIRGWDEALLTMSK   79 (119)
T ss_dssp             CSCSEEEEEEECCCSSCCCCTTCEEEEEEEEECTT-SCEEEECCCCSSSTTTTCCCEEEETTSS-SSCHHHHHHHTTCCT
T ss_pred             CCCccEEEEEEcCCCCCcCCCCCEEEEEEEEEECC-CCEEEeccccccccccCCCCEEEEECCC-ChhHHHHHHHhCCCC
Confidence            4689999999999997 799999999999999987 9999999753       47999999999 899999999999999


Q ss_pred             CcEEEEEeccccccCCCCCCCCCCCCCCCcEEEEEEEEeee
Q 017811          122 GEHALLHVGWELGYGKEGSFSFPNVSPMADLVYEVVLIGFD  162 (365)
Q Consensus       122 GE~~~~~i~~~~~yg~~g~~~~~~ip~~~~l~~~iel~~~~  162 (365)
                      ||++.|.|||.++||+.|.. ...||||++|+|+|+|+++.
T Consensus        80 Ge~~~v~ip~~~aYG~~g~~-~~~Ip~~~~l~f~veL~~i~  119 (119)
T 3kz7_A           80 GEKARLEIEPEWAYGKKGQP-DAKIPPNTKLIFEVELVDID  119 (119)
T ss_dssp             TCEEEEEECGGGTTCTTCBG-GGTBCTTCCEEEEEEEEEEC
T ss_pred             CCEEEEEECcHHhcCCCCCC-CCccCcCCeEEEEEEEEEeC
Confidence            99999999999999999862 13799999999999999873

>3o5q_A Peptidyl-prolyl CIS-trans isomerase FKBP5; FK-506 binding domain, HSP90 cochaperone, immunophiline, PEP prolyl isomerase; 0.96A {Homo sapiens} PDB: 3o5m_A 3o5l_A 3o5o_A 3o5p_A 3o5r_A* 4drk_A* 4drm_A* 4drn_A* 4dro_A* 4drp_A* 4drq_A* 3o5j_A 3o5g_A 3o5i_A 3o5k_A

Probab=99.92  E-value=8.9e-25  Score=177.02  Aligned_cols=110  Identities=30%  Similarity=0.526  Sum_probs=103.0

Q ss_pred             eCCCeEEEEEecCCCC-CCCCCCEEEEEEEEEEcCCCeeeccCcCCCCcceeecCCCCchhhhHHHHHhcCCcCcEEEEE
Q 017811           50 LHEKVTKQIIKEGHGQ-KPSKYSTCFLHYRAWAESTRHKFDDTWLEQQPLEMVLGKEKKEMTGLAIGVSSMKAGEHALLH  128 (365)
Q Consensus        50 ~~~gv~k~v~~~G~g~-~p~~g~~v~v~y~~~~~~~g~~fd~s~~~~~p~~f~lg~~~~~i~g~e~~l~~Mk~GE~~~~~  128 (365)
                      .++||+|+++++|+|. .|..||.|+|||++++.+ |++||+++.++.|+.|.+|.+ ++|+||+.+|.+|++||++.|.
T Consensus        17 ~d~gv~~~i~~~G~G~~~p~~gd~V~v~Y~g~~~d-G~~fdss~~~~~p~~f~lG~g-~~i~G~e~~l~gm~~Ge~~~v~   94 (128)
T 3o5q_A           17 KDRGVLKIVKRVGNGEETPMIGDKVYVHYKGKLSN-GKKFDSSHDRNEPFVFSLGKG-QVIKAWDIGVATMKKGEICHLL   94 (128)
T ss_dssp             CSSSEEEEEEECCSSSCCCCTTCEEEEEEEEEETT-SCEEEEHHHHTSCEEEETTSS-SSCHHHHHHHTTCCTTCEEEEE
T ss_pred             CCCCEEEEEEECCCCCccCCCCCEEEEEEEEEECC-CCEEEecCCCCCCEEEEECCC-CccHHHHHHHhcCCCCCEEEEE
Confidence            4679999999999998 799999999999999987 899999987788999999999 8999999999999999999999


Q ss_pred             eccccccCCCCCCCCCCCCCCCcEEEEEEEEeeec
Q 017811          129 VGWELGYGKEGSFSFPNVSPMADLVYEVVLIGFDE  163 (365)
Q Consensus       129 i~~~~~yg~~g~~~~~~ip~~~~l~~~iel~~~~~  163 (365)
                      |||.++||+.|.  ++.|||+++|+|+|+|+++..
T Consensus        95 ip~~~aYG~~g~--~~~Ip~~~~l~f~vel~~i~~  127 (128)
T 3o5q_A           95 CKPEYAYGSAGS--LPKIPSNATLFFEIELLDFKG  127 (128)
T ss_dssp             ECGGGTTTTTCB--TTTBCTTCCEEEEEEEEEEEC
T ss_pred             EChHHcCCCCCC--CCCcCCCCEEEEEEEEEEecC
Confidence            999999999987  468999999999999998863

>2y78_A Peptidyl-prolyl CIS-trans isomerase; MIP, ppiase, virulence; HET: SO4 GOL; 0.91A {Burkholderia pseudomallei} PDB: 2ke0_A 2ko7_A* 2l2s_A* 4dz2_A* 4dz3_A*

Probab=99.92  E-value=2.2e-24  Score=175.47  Aligned_cols=112  Identities=30%  Similarity=0.479  Sum_probs=104.2

Q ss_pred             ceeeeCCCeEEEEEecCCCCCCCCCCEEEEEEEEEEcCCCeeeccCcCCCCcceeecCCCCchhhhHHHHHhcCCcCcEE
Q 017811           46 EVEVLHEKVTKQIIKEGHGQKPSKYSTCFLHYRAWAESTRHKFDDTWLEQQPLEMVLGKEKKEMTGLAIGVSSMKAGEHA  125 (365)
Q Consensus        46 ~~~~~~~gv~k~v~~~G~g~~p~~g~~v~v~y~~~~~~~g~~fd~s~~~~~p~~f~lg~~~~~i~g~e~~l~~Mk~GE~~  125 (365)
                      .+.++++|+.++++++|+|..|..||.|+|+|++++.+ |++||+++.+++|++|.+|.+ ++|+||+++|.+|++||++
T Consensus        22 ~~~~~~~gl~~~~l~~G~G~~~~~gd~V~v~Y~g~~~d-G~~fdss~~~~~p~~f~lG~g-~vi~G~eeaL~gmk~Ge~~   99 (133)
T 2y78_A           22 TVVTTESGLKYEDLTEGSGAEARAGQTVSVHYTGWLTD-GQKFDSSKDRNDPFAFVLGGG-MVIKGWDEGVQGMKVGGVR   99 (133)
T ss_dssp             CCEECTTSCEEEEEECCSSCBCCTTSEEEEEEEEEETT-SCEEEETTTTTCCEEEETTSS-SSCHHHHHHSTTCBTTCEE
T ss_pred             CcEECCCCEEEEEEEcCCCCCCCCCCEEEEEEEEEECC-CCEEeccCcCCCCEEEEeCCC-ChhHHHHHHHcCCCCCCEE
Confidence            36778899999999999999999999999999999976 999999987788999999999 8999999999999999999


Q ss_pred             EEEeccccccCCCCCCCCCCCCCCCcEEEEEEEEee
Q 017811          126 LLHVGWELGYGKEGSFSFPNVSPMADLVYEVVLIGF  161 (365)
Q Consensus       126 ~~~i~~~~~yg~~g~~~~~~ip~~~~l~~~iel~~~  161 (365)
                      +|.|||.++||+.+.  .+.||||++|+|+|+|+++
T Consensus       100 ~v~ip~~~aYG~~~~--~~~Ipp~~~l~f~VeL~~I  133 (133)
T 2y78_A          100 RLTIPPQLGYGARGA--GGVIPPNATLVFEVELLDV  133 (133)
T ss_dssp             EEEECGGGTTTTTCB--TTTBCTTCCEEEEEEEEEC
T ss_pred             EEEECcHHhCCCCCC--CCCCCCCCeEEEEEEEEEC
Confidence            999999999999886  3579999999999999874

>3b7x_A FK506-binding protein 6; isomerase, repeat, rotamase, TPR repeat, williams-beuren syndrome, structural genomics consortium, SGC; 2.10A {Homo sapiens}

Probab=99.92  E-value=6e-25  Score=179.33  Aligned_cols=110  Identities=26%  Similarity=0.495  Sum_probs=95.5

Q ss_pred             eCCCeEEEEEecCCCCCCCCCCEEEEEEEEEEcCCCeeeccCcCCCCcceeecCCCCchhhhHHHHHhcCCcCcEEEEEe
Q 017811           50 LHEKVTKQIIKEGHGQKPSKYSTCFLHYRAWAESTRHKFDDTWLEQQPLEMVLGKEKKEMTGLAIGVSSMKAGEHALLHV  129 (365)
Q Consensus        50 ~~~gv~k~v~~~G~g~~p~~g~~v~v~y~~~~~~~g~~fd~s~~~~~p~~f~lg~~~~~i~g~e~~l~~Mk~GE~~~~~i  129 (365)
                      +++||+|+++++|+|..|..||.|+|||++++.++|++||+++.++.|+.|.+|.+ ++|+||+.+|.+|++||++.|+|
T Consensus        24 ~~~gl~~~vl~~G~g~~~~~gd~V~v~Y~g~l~~~G~~fdss~~~~~p~~f~lG~g-~~i~G~e~aL~gm~~Ge~~~v~i  102 (134)
T 3b7x_A           24 GDRGVLKDVIREGAGDLVAPDASVLVKYSGYLEHMDRPFDSNYFRKTPRLMKLGED-ITLWGMELGLLSMRRGELARFLF  102 (134)
T ss_dssp             SSSSEEEEEEECCEEEECCTTCEEEEEEEEECTTCSSCSEEC-------CEEC-CC-CCCHHHHHHHHTCEETCEEEEEE
T ss_pred             CCCCEEEEEEEcCCCCCCCCCCEEEEEEEEEECCCCeEEEecCCCCCCEEEEcCCc-chhHHHHHHHhCCCCCCEEEEEE
Confidence            57899999999999998889999999999998855999999987778999999999 89999999999999999999999


Q ss_pred             ccccccCCCCCCCCCCCCCCCcEEEEEEEEeee
Q 017811          130 GWELGYGKEGSFSFPNVSPMADLVYEVVLIGFD  162 (365)
Q Consensus       130 ~~~~~yg~~g~~~~~~ip~~~~l~~~iel~~~~  162 (365)
                      ||.++||+.+.  ++.||||++|+|+|+|+++.
T Consensus       103 p~~~aYG~~~~--~~~Ip~~~~l~f~VeL~~i~  133 (134)
T 3b7x_A          103 KPNYAYGTLGC--PPLIPPNTTVLFEIELLDFL  133 (134)
T ss_dssp             CGGGTTTTTCB--TTTBCTTCCEEEEEEEEEEC
T ss_pred             CHHHCcCCCCC--CCCcCcCCeEEEEEEEEEEe
Confidence            99999999887  45799999999999999875

>2ppn_A FK506-binding protein 1A; high resolution protein structure, isomerase; 0.92A {Homo sapiens} SCOP: d.26.1.1 PDB: 1b6c_A 1a7x_A 1d7h_A 1d7i_A 1d7j_A* 1f40_A* 1fap_A* 1d6o_A* 1fkd_A* 1fkf_A* 1fkg_A* 1fkh_A* 1fki_A* 1fkj_A* 1fkr_A 1fks_A 1fkt_A 1j4h_A* 1j4i_A* 1j4r_A* ...

Probab=99.91  E-value=2.5e-24  Score=169.05  Aligned_cols=106  Identities=31%  Similarity=0.594  Sum_probs=98.8

Q ss_pred             CeEEEEEecCCCCC-CCCCCEEEEEEEEEEcCCCeeeccCcCCCCcceeecCCCCchhhhHHHHHhcCCcCcEEEEEecc
Q 017811           53 KVTKQIIKEGHGQK-PSKYSTCFLHYRAWAESTRHKFDDTWLEQQPLEMVLGKEKKEMTGLAIGVSSMKAGEHALLHVGW  131 (365)
Q Consensus        53 gv~k~v~~~G~g~~-p~~g~~v~v~y~~~~~~~g~~fd~s~~~~~p~~f~lg~~~~~i~g~e~~l~~Mk~GE~~~~~i~~  131 (365)
                      ||+++++++|+|.. |..||.|+|||++++.+ |++||+++.+++|+.|.+|.+ ++|+||+.+|.+|++||++.|.|||
T Consensus         1 Gl~~~~~~~G~g~~~~~~gd~V~v~y~~~~~d-G~~~d~s~~~~~p~~f~lG~~-~~i~g~~~~l~gm~~Ge~~~~~ip~   78 (107)
T 2ppn_A            1 GVQVETISPGDGRTFPKRGQTCVVHYTGMLED-GKKFDSSRDRNKPFKFMLGKQ-EVIRGWEEGVAQMSVGQRAKLTISP   78 (107)
T ss_dssp             CEEEEEEECCCSSCCCCTTCEEEEEEEEEETT-SCEEEEHHHHTSCEEEETTSC-CSCHHHHHHHTTCCTTCEEEEEECG
T ss_pred             CcEEEEEECcCCCcCCCCCCEEEEEEEEEECC-CCEEEecCCCCCCEEEEeCCC-ChHHHHHHHHhCCCCCCEEEEEECH
Confidence            78999999999985 99999999999999986 999999987678999999999 8999999999999999999999999


Q ss_pred             ccccCCCCCCCCCCCCCCCcEEEEEEEEeee
Q 017811          132 ELGYGKEGSFSFPNVSPMADLVYEVVLIGFD  162 (365)
Q Consensus       132 ~~~yg~~g~~~~~~ip~~~~l~~~iel~~~~  162 (365)
                      .++||+.+.  ++.||||++++|+|+|++++
T Consensus        79 ~~ayG~~~~--~~~Ip~~~~l~f~v~l~~v~  107 (107)
T 2ppn_A           79 DYAYGATGH--PGIIPPHATLVFDVELLKLE  107 (107)
T ss_dssp             GGTTTTTCB--TTTBCTTCCEEEEEEEEEEC
T ss_pred             HHccCCCCC--CCCcCCCCeEEEEEEEEEeC
Confidence            999999886  46799999999999999863

>2awg_A 38 kDa FK-506 binding protein; FKBP-type, ppiase, BCL-2 inhibitor, SHH signalling antagonist, structural genomics consortium, SGC; 1.60A {Homo sapiens} PDB: 2f2d_A 3ey6_A

Probab=99.91  E-value=6.4e-24  Score=169.59  Aligned_cols=112  Identities=23%  Similarity=0.359  Sum_probs=103.4

Q ss_pred             CCCceeeeCCC-eEEEEEecCCCC--CCCCCCEEEEEEEEEEcCCCeeeccCcCCCCcceeecCCCCchhhhHHHHHhcC
Q 017811           43 VDSEVEVLHEK-VTKQIIKEGHGQ--KPSKYSTCFLHYRAWAESTRHKFDDTWLEQQPLEMVLGKEKKEMTGLAIGVSSM  119 (365)
Q Consensus        43 ~~~~~~~~~~g-v~k~v~~~G~g~--~p~~g~~v~v~y~~~~~~~g~~fd~s~~~~~p~~f~lg~~~~~i~g~e~~l~~M  119 (365)
                      .+++++++++| ++|+++++|+|.  .|..||.|+|||++++.+ |++||++    .|+.|.+|.+ ++|+||+.+|.+|
T Consensus         3 ~~~~~~~~~~g~~~~~vl~~G~G~~~~~~~gd~V~v~y~g~~~d-G~~~ds~----~p~~f~lG~~-~~i~g~e~~l~gm   76 (118)
T 2awg_A            3 PEEWLDILGNGLLRKKTLVPGPPGSSRPVKGQVVTVHLQTSLEN-GTRVQEE----PELVFTLGDC-DVIQALDLSVPLM   76 (118)
T ss_dssp             TTCEEESSSSSSEEEEEEECCCTTCCCCCTTSEEEEEEEEECTT-SCEEEEE----EEEEEETTSS-CSCHHHHHHGGGS
T ss_pred             cccceEECCCCCEEEEEEEcCCCCCccCCCCCEEEEEEEEEECC-CCEEECC----CCEEEEECCC-ChhHHHHHHHhCC
Confidence            45688899888 999999999997  899999999999999876 8999983    7999999999 8999999999999


Q ss_pred             CcCcEEEEEeccccccCCCCCCCCCCCCCCCcEEEEEEEEeee
Q 017811          120 KAGEHALLHVGWELGYGKEGSFSFPNVSPMADLVYEVVLIGFD  162 (365)
Q Consensus       120 k~GE~~~~~i~~~~~yg~~g~~~~~~ip~~~~l~~~iel~~~~  162 (365)
                      ++||++.|.|||.++||..+.  ++.|||+++|+|+|+|+++.
T Consensus        77 ~~Ge~~~~~ip~~~ayG~~~~--~~~Ip~~~~l~f~v~l~~v~  117 (118)
T 2awg_A           77 DVGETAMVTADSKYCYGPQGR--SPYIPPHAALCLEVTLKTAV  117 (118)
T ss_dssp             CTTCEEEEEECGGGTTTTTCB--TTTBCTTCCEEEEEEEEEEE
T ss_pred             CCCCEEEEEEChHHccCCCCC--CCccCCCCeEEEEEEEEEec
Confidence            999999999999999999886  46799999999999999875

>4dip_A Peptidyl-prolyl CIS-trans isomerase FKBP14; structural genomics, structural genomics consortium, SGC, PE prolyl CIS-trans isomerase; 1.82A {Homo sapiens}

Probab=99.91  E-value=4.5e-24  Score=172.29  Aligned_cols=115  Identities=23%  Similarity=0.415  Sum_probs=104.6

Q ss_pred             ceeeeCCCeEEEEEecCC--CCCCCCCCEEEEEEEEEEcCCCeeeccCcC--CCCcceeecCCCCchhhhHHHHHhcCCc
Q 017811           46 EVEVLHEKVTKQIIKEGH--GQKPSKYSTCFLHYRAWAESTRHKFDDTWL--EQQPLEMVLGKEKKEMTGLAIGVSSMKA  121 (365)
Q Consensus        46 ~~~~~~~gv~k~v~~~G~--g~~p~~g~~v~v~y~~~~~~~g~~fd~s~~--~~~p~~f~lg~~~~~i~g~e~~l~~Mk~  121 (365)
                      .+.+.++|++++++++|.  |..|..||.|+|||++++.++|++||+++.  .+.|+.|.+|.+ ++|+||+.+|.+|++
T Consensus         6 ~~~~~~~gl~~~~l~~g~~~g~~~~~gd~V~v~Y~g~~~~dG~~fdss~~~~~~~p~~f~lG~~-~~i~G~e~~l~gm~~   84 (125)
T 4dip_A            6 GALIPEPEVKIEVLQKPFICHRKTKGGDLMLVHYEGYLEKDGSLFHSTHKHNNGQPIWFTLGIL-EALKGWDQGLKGMCV   84 (125)
T ss_dssp             GGGCCCCCCEEEEEECCSCCSCCCCTTCEEEEEEEEEETTTCCEEEEHHHHTTTCCEEEETTSC-SSCHHHHHHSTTCCT
T ss_pred             ceEECCCCeEEEEEEcCCCCCCcCCCCCEEEEEEEEEECCCCcEEEEcccCCCCcCEEEEeCCC-ChhHHHHHHHhCCCC
Confidence            456678899999999998  679999999999999999833999999874  468999999999 899999999999999


Q ss_pred             CcEEEEEeccccccCCCCCCCCCCCCCCCcEEEEEEEEeeecC
Q 017811          122 GEHALLHVGWELGYGKEGSFSFPNVSPMADLVYEVVLIGFDET  164 (365)
Q Consensus       122 GE~~~~~i~~~~~yg~~g~~~~~~ip~~~~l~~~iel~~~~~~  164 (365)
                      ||++.|.|||.++||+.+.   +.||||++|+|+|+|+++.+.
T Consensus        85 Ge~~~~~ip~~~aYG~~g~---~~Ip~~~~l~f~vel~~i~~~  124 (125)
T 4dip_A           85 GEKRKLIIPPALGYGKEGK---GKIPPESTLIFNIDLLEIRNG  124 (125)
T ss_dssp             TCEEEEEECGGGTTTTTCB---TTBCTTCCEEEEEEEEEEECC
T ss_pred             CCEEEEEEChHHhcCCCCC---CCCCCCCeEEEEEEEEEEEcC
Confidence            9999999999999999986   589999999999999998753

>1fd9_A Protein (macrophage infectivity potentiator prote; FKBP domain, long alpha helix, dimerisation VIA helical INTE isomerase; 2.41A {Legionella pneumophila} SCOP: d.26.1.1 PDB: 2uz5_A 2vcd_A*

Probab=99.91  E-value=4.5e-24  Score=186.55  Aligned_cols=112  Identities=24%  Similarity=0.347  Sum_probs=104.9

Q ss_pred             ceeeeCCCeEEEEEecCCCCCCCCCCEEEEEEEEEEcCCCeeeccCcCCCCcceeecCCCCchhhhHHHHHhcCCcCcEE
Q 017811           46 EVEVLHEKVTKQIIKEGHGQKPSKYSTCFLHYRAWAESTRHKFDDTWLEQQPLEMVLGKEKKEMTGLAIGVSSMKAGEHA  125 (365)
Q Consensus        46 ~~~~~~~gv~k~v~~~G~g~~p~~g~~v~v~y~~~~~~~g~~fd~s~~~~~p~~f~lg~~~~~i~g~e~~l~~Mk~GE~~  125 (365)
                      .+.++++|++|+|+++|+|..|..||.|+|||++++.+ |++||+++.++.|++|.+|   ++|+||+++|.+|++|+++
T Consensus       100 ~v~~~~sGl~y~vl~~G~G~~p~~gD~V~V~Y~g~l~d-G~vfdss~~~g~p~~f~lg---~vI~G~eeaL~gMk~Gek~  175 (213)
T 1fd9_A          100 GVVVLPSGLQYKVINSGNGVKPGKSDTVTVEYTGRLID-GTVFDSTEKTGKPATFQVS---QVIPGWTEALQLMPAGSTW  175 (213)
T ss_dssp             TEEECTTSCEEEEEECCCSCCCCTTCEEEEEEEEEETT-SCEEEEHHHHCSCEEEEGG---GSCHHHHHHHTTCCTTCEE
T ss_pred             CcEECCCccEEEEEecCCCccCCCCCEEEEEEEEEECC-CCEEeeccccCCCEEEEcC---chhhHHHHHHcCCCCCCEE
Confidence            37889999999999999999999999999999999987 9999999877889999996   7899999999999999999


Q ss_pred             EEEeccccccCCCCCCCCCCCCCCCcEEEEEEEEeeec
Q 017811          126 LLHVGWELGYGKEGSFSFPNVSPMADLVYEVVLIGFDE  163 (365)
Q Consensus       126 ~~~i~~~~~yg~~g~~~~~~ip~~~~l~~~iel~~~~~  163 (365)
                      +|+|||.++||+.|.  ++.||||++|+|+|+|+++.+
T Consensus       176 ~v~IP~~laYG~~g~--~~~Ipp~stLiF~VeLl~v~~  211 (213)
T 1fd9_A          176 EIYVPSGLAYGPRSV--GGPIGPNETLIFKIHLISVKK  211 (213)
T ss_dssp             EEEECGGGTTTTCCC--SSSCCTTCCEEEEEEEEEEEC
T ss_pred             EEEECchhccCccCC--CCCCCCCCeEEEEEEEEEEEc
Confidence            999999999999886  467999999999999999875

>1r9h_A FKB-6, FK506 binding protein family; structural genomics, peptidylprolyl isomerase, PSI, protein structure initiative; 1.80A {Caenorhabditis elegans} SCOP: d.26.1.1

Probab=99.91  E-value=5.9e-24  Score=173.66  Aligned_cols=111  Identities=32%  Similarity=0.504  Sum_probs=102.8

Q ss_pred             eCCCeEEEEEecCCCC-CCCCCCEEEEEEEEEEcCCCeeeccCcCCCCcceeecCCCCchhhhHHHHHhcCCcCcEEEEE
Q 017811           50 LHEKVTKQIIKEGHGQ-KPSKYSTCFLHYRAWAESTRHKFDDTWLEQQPLEMVLGKEKKEMTGLAIGVSSMKAGEHALLH  128 (365)
Q Consensus        50 ~~~gv~k~v~~~G~g~-~p~~g~~v~v~y~~~~~~~g~~fd~s~~~~~p~~f~lg~~~~~i~g~e~~l~~Mk~GE~~~~~  128 (365)
                      +++||+|+++++|+|. .|..||.|+|||++++.+ |++||+++.++.|++|.+|.+ ++|+||+.+|.+|++||++.|.
T Consensus        12 ~~~gl~~~~l~~G~g~~~~~~gd~V~v~Y~g~~~d-G~~fdss~~~~~p~~f~lG~~-~vi~G~e~~l~gm~~Ge~~~v~   89 (135)
T 1r9h_A           12 KDGGVLKLIKKEGQGVVKPTTGTTVKVHYVGTLEN-GTKFDSSRDRGDQFSFNLGRG-NVIKGWDLGVATMTKGEVAEFT   89 (135)
T ss_dssp             CCSSEEEEEEECCBSSCCCCTTCEEEEEEEEEETT-SCEEEEHHHHTSCEEEETTTT-SSCHHHHHHHTTCCBTCEEEEE
T ss_pred             CCCcEEEEEEEccCCCcCCCCCCEEEEEEEEEECC-CCEEEecCcCCCCEEEEeCCC-CccHHHHHHHhcCCCCCEEEEE
Confidence            4579999999999998 799999999999999877 999999977678999999998 8999999999999999999999


Q ss_pred             eccccccCCCCCCCCCCCCCCCcEEEEEEEEeeecC
Q 017811          129 VGWELGYGKEGSFSFPNVSPMADLVYEVVLIGFDET  164 (365)
Q Consensus       129 i~~~~~yg~~g~~~~~~ip~~~~l~~~iel~~~~~~  164 (365)
                      |||.++||+.+.  ++.||++++|+|+|+|+++...
T Consensus        90 ip~~~aYG~~g~--~~~Ip~~~~l~f~v~l~~i~~~  123 (135)
T 1r9h_A           90 IRSDYGYGDAGS--PPKIPGGATLIFEVELFEWSAE  123 (135)
T ss_dssp             ECGGGTTTTTCB--TTTBCTTCCEEEEEEEEEEEC-
T ss_pred             EChHHcCCCCCC--CCCcCcCCcEEEEEEEEEeecC
Confidence            999999999887  4789999999999999999764

>2lgo_A FKBP; infectious disease, isomerase, giardiasis, ssgcid, structura genomics, seattle structural genomics center for infectious; NMR {Giardia lamblia}

Probab=99.91  E-value=4.8e-24  Score=172.91  Aligned_cols=111  Identities=27%  Similarity=0.499  Sum_probs=101.3

Q ss_pred             eeeeCCCeEEE--EEecCCCCC-CCCCCEEEEEEEEEEcCCCeeeccCcCCCCcceeecCCCCchhhhHHHHHhcCCcCc
Q 017811           47 VEVLHEKVTKQ--IIKEGHGQK-PSKYSTCFLHYRAWAESTRHKFDDTWLEQQPLEMVLGKEKKEMTGLAIGVSSMKAGE  123 (365)
Q Consensus        47 ~~~~~~gv~k~--v~~~G~g~~-p~~g~~v~v~y~~~~~~~g~~fd~s~~~~~p~~f~lg~~~~~i~g~e~~l~~Mk~GE  123 (365)
                      +..+++|+.++  ++++|+|.. |..||.|+|+|++++.+ |++||+++.++.|+.|.+|.+ ++|+||+.+|.+|++||
T Consensus        17 ~~~~~~Gl~~~K~~l~~G~G~~~~~~gd~V~v~Y~g~~~d-G~~fdss~~~~~p~~f~lG~g-~vi~G~e~aL~gm~~Ge   94 (130)
T 2lgo_A           17 QGPGSMSAQLEKKVLTPGDGVTKPQAGKKVTVHYDGRFPD-GKQFDSSRSRGKPFQFTLGAG-EVIKGWDQGVATMTLGE   94 (130)
T ss_dssp             CSSSSSSCCCCEEEEECCCSSCCCCTTSEEEEEEEEECTT-SCEEECTTTTTCCEEEETTST-TSCHHHHHHHHHSCTTE
T ss_pred             ceeCCCceEEEEEEEeccCCCccCCCCCEEEEEEEEEECC-CCEEEccCcCCCCEEEEeCCC-CccHHHHHHHhCCCCCC
Confidence            44556888777  999999996 99999999999999876 999999987778999999999 89999999999999999


Q ss_pred             EEEEEeccccccCCCCCCCCCCCCCCCcEEEEEEEEee
Q 017811          124 HALLHVGWELGYGKEGSFSFPNVSPMADLVYEVVLIGF  161 (365)
Q Consensus       124 ~~~~~i~~~~~yg~~g~~~~~~ip~~~~l~~~iel~~~  161 (365)
                      ++.|.|||.++||+.+.  ++.||||++|+|+|+|+++
T Consensus        95 ~~~v~ip~~~aYG~~~~--~~~Ip~~~~l~f~VeL~~i  130 (130)
T 2lgo_A           95 KALFTIPYQLAYGERGY--PPVIPPKATLVFEVELLAV  130 (130)
T ss_dssp             EEEEEECTTTSTTTTCC--STTSCSSCCEEEEEEEEEC
T ss_pred             EEEEEECcHHHCCCCCC--CCCcCCCCeEEEEEEEEEC
Confidence            99999999999999886  4679999999999999874

>2vn1_A 70 kDa peptidylprolyl isomerase; FKBP, FK506, TPR repeat; HET: FK5; 2.35A {Plasmodium falciparum} PDB: 2ofn_A 2ki3_A 3ihz_A* 3ni6_A 3pa7_A

Probab=99.91  E-value=1.2e-23  Score=170.73  Aligned_cols=114  Identities=29%  Similarity=0.480  Sum_probs=101.9

Q ss_pred             ceeeeCCC-eEEEEEecC---CCCCCCCCCEEEEEEEEEE-cCCCeeeccCcCCCCcceeecCCCCchhhhHHHHHhcCC
Q 017811           46 EVEVLHEK-VTKQIIKEG---HGQKPSKYSTCFLHYRAWA-ESTRHKFDDTWLEQQPLEMVLGKEKKEMTGLAIGVSSMK  120 (365)
Q Consensus        46 ~~~~~~~g-v~k~v~~~G---~g~~p~~g~~v~v~y~~~~-~~~g~~fd~s~~~~~p~~f~lg~~~~~i~g~e~~l~~Mk  120 (365)
                      .+.++++| ++++++++|   .|..|..||.|+|||++++ .+ |++||+++.++.|++|.+|.+ ++|+||+.+|.+|+
T Consensus         9 ~~~~~~~g~~~~~il~~G~~g~g~~~~~gd~V~v~Y~g~~~~d-G~~fd~s~~~~~p~~f~lG~g-~~i~g~e~~l~gm~   86 (129)
T 2vn1_A            9 KVELTADGGVIKTILKKGDEGEENIPKKGNEVTVHYVGKLEST-GKVFDSSFDRNVPFKFHLEQG-EVIKGWDICVSSMR   86 (129)
T ss_dssp             EEECSTTSSEEEEEEECCCCSGGGSCCTTCEEEEEEEEEETTT-CCEEEEGGGTTCCEEEETTSS-SSCHHHHHHHTTCC
T ss_pred             CcEECCCCCEEEEEEeCCCCCCCCcCCCCCEEEEEEEEEECCC-CeEEEecCCCCccEEEEeCCC-CcCHHHHHHHhCCC
Confidence            46777777 556799966   4568999999999999998 55 999999987778999999998 89999999999999


Q ss_pred             cCcEEEEEeccccccCCCCCCCCCCCCCCCcEEEEEEEEeeec
Q 017811          121 AGEHALLHVGWELGYGKEGSFSFPNVSPMADLVYEVVLIGFDE  163 (365)
Q Consensus       121 ~GE~~~~~i~~~~~yg~~g~~~~~~ip~~~~l~~~iel~~~~~  163 (365)
                      +||++.|.|||.++||+.+.  ++.||||++|+|+|+|+++..
T Consensus        87 ~Ge~~~v~ip~~~aYG~~~~--~~~Ip~~~~l~f~vel~~v~~  127 (129)
T 2vn1_A           87 KNEKCLVRIESMYGYGDEGC--GESIPGNSVLLFEIELLSFRE  127 (129)
T ss_dssp             TTCEEEEEECGGGTTTTTCB--TTTBCTTCCEEEEEEEEEEEC
T ss_pred             CCCEEEEEEChHHcCCCCCC--CCCcCCCCeEEEEEEEEEEec
Confidence            99999999999999999886  467999999999999999875

>3uf8_A Ubiquitin-like protein SMT3, peptidyl-prolyl CIS- isomerase; ssgcid, seattle structural genomics center for in disease; HET: FK5; 1.50A {Burkholderia pseudomallei} PDB: 4ggq_C* 3vaw_A* 3uqa_A* 4g50_A* 4fn2_A* 3uqb_A* 4giv_A* 1euv_B 3v60_A 3v61_A 3v62_A*

Probab=99.90  E-value=1.6e-23  Score=183.29  Aligned_cols=112  Identities=30%  Similarity=0.487  Sum_probs=105.2

Q ss_pred             ceeeeCCCeEEEEEecCCCCCCCCCCEEEEEEEEEEcCCCeeeccCcCCCCcceeecCCCCchhhhHHHHHhcCCcCcEE
Q 017811           46 EVEVLHEKVTKQIIKEGHGQKPSKYSTCFLHYRAWAESTRHKFDDTWLEQQPLEMVLGKEKKEMTGLAIGVSSMKAGEHA  125 (365)
Q Consensus        46 ~~~~~~~gv~k~v~~~G~g~~p~~g~~v~v~y~~~~~~~g~~fd~s~~~~~p~~f~lg~~~~~i~g~e~~l~~Mk~GE~~  125 (365)
                      .+.++++|++|+++++|+|..|..||.|+|||++++.+ |++||+++.++.|+.|.+|.+ ++|+||+.+|.+|++||++
T Consensus        98 t~~~~~sGl~~~vl~~G~G~~~~~gd~V~v~Y~g~l~d-G~~fdss~~~~~P~~f~lG~g-~vi~G~eeaL~gM~~Ge~~  175 (209)
T 3uf8_A           98 TVVTTESGLKYEDLTEGSGAEARAGQTVSVHYTGWLTD-GQKFDSSKDRNDPFAFVLGGG-MVIKGWDEGVQGMKVGGVR  175 (209)
T ss_dssp             CCEECTTSCEEEEEECCCSCBCCTTCEEEEEEEEEETT-SCEEEESGGGTCCEEEETTSS-SSCHHHHHHHTTCBTTCEE
T ss_pred             cccCCCCceEEEEEEcCCCCcCCCCCEEEEEEEEEECC-CCEEEEccccCCCEEEEeCCC-ccchhHHHHHhCCCCCCEE
Confidence            46778899999999999999999999999999999987 999999988889999999999 8999999999999999999


Q ss_pred             EEEeccccccCCCCCCCCCCCCCCCcEEEEEEEEee
Q 017811          126 LLHVGWELGYGKEGSFSFPNVSPMADLVYEVVLIGF  161 (365)
Q Consensus       126 ~~~i~~~~~yg~~g~~~~~~ip~~~~l~~~iel~~~  161 (365)
                      .|.|||.+|||+.|.  .+.||||++|+|+|+|+++
T Consensus       176 ~v~Ipp~~aYG~~g~--~~~IP~~s~LvF~VeL~~I  209 (209)
T 3uf8_A          176 RLTIPPQLGYGARGA--AGVIPPNATLVFEVELLDV  209 (209)
T ss_dssp             EEEECGGGTTTTTCB--TTTBCTTCCEEEEEEEEEC
T ss_pred             EEEECcHHhCCCCCC--CCCcCCCCeEEEEEEEEEC
Confidence            999999999999987  3569999999999999874

>2d9f_A FK506-binding protein 8 variant; FKBP, rapamycin, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.90  E-value=1.5e-23  Score=171.26  Aligned_cols=118  Identities=22%  Similarity=0.356  Sum_probs=107.3

Q ss_pred             CCCCCceeeeCCC-eEEEEEecCCCC--CCCCCCEEEEEEEEEEcCCCeeeccCcCCCCcceeecCCCCchhhhHHHHHh
Q 017811           41 PKVDSEVEVLHEK-VTKQIIKEGHGQ--KPSKYSTCFLHYRAWAESTRHKFDDTWLEQQPLEMVLGKEKKEMTGLAIGVS  117 (365)
Q Consensus        41 ~~~~~~~~~~~~g-v~k~v~~~G~g~--~p~~g~~v~v~y~~~~~~~g~~fd~s~~~~~p~~f~lg~~~~~i~g~e~~l~  117 (365)
                      ++.+++++++++| ++|+++++|+|.  .|..||.|+|||++++.+ |++||+    ..|+.|.+|.+ ++|+||+.+|.
T Consensus         5 ~~~~~~~~~~~~g~l~~~vl~~G~G~~~~~~~gd~V~v~Y~g~~~d-G~~fds----~~p~~f~lG~g-~~i~G~e~~L~   78 (135)
T 2d9f_A            5 SSGEEWLDILGNGLLRKKTLVPGPPGSSRPVKGQVVTVHLQTSLEN-GTRVQE----EPELVFTLGDC-DVIQALDLSVP   78 (135)
T ss_dssp             CCCSSCEESSSSSSSEEEEEECCCSSCCCCCTTSEEEEEEEEEESS-SCEEEE----EEEEEEETTSC-CSCTTTTTTGG
T ss_pred             CCcccCcEECCCCCEEEEEEEcCCCCCccCCCCCEEEEEEEEEECC-CCEEec----CCCEEEEeCCC-ChhHHHHHHHh
Confidence            3456678899888 999999999997  899999999999999977 899997    37999999999 89999999999


Q ss_pred             cCCcCcEEEEEeccccccCCCC-CCCCCCCCCCCcEEEEEEEEeeecCcc
Q 017811          118 SMKAGEHALLHVGWELGYGKEG-SFSFPNVSPMADLVYEVVLIGFDETKE  166 (365)
Q Consensus       118 ~Mk~GE~~~~~i~~~~~yg~~g-~~~~~~ip~~~~l~~~iel~~~~~~~~  166 (365)
                      +|++||++.|.|||.++||..+ .  .+.||||++|+|+|+|+++....+
T Consensus        79 gm~~Ge~~~v~ip~~~aYG~~~~~--~~~Ip~~~~l~f~vel~~v~~~~~  126 (135)
T 2d9f_A           79 LMDVGETAMVTADSKYCYGPQGSR--SPYIPPHAALCLEVTLKTAVDRPD  126 (135)
T ss_dssp             GSCTTCEEEEEECHHHHTCTTCCS--SSCCCTTCCEEEEEEEEEEESSCS
T ss_pred             CCCCCCEEEEEEChhHccCcCCcC--CCccCCCCeEEEEEEEEEeecCCc
Confidence            9999999999999999999988 4  367999999999999999987654

>1q6h_A FKBP-type peptidyl-prolyl CIS-trans isomerase FKP; chaperone, peptidyl-prolyl isomerase, heat shock protein, FK family; HET: MSE; 1.97A {Escherichia coli} SCOP: d.26.1.1 PDB: 1q6i_A* 1q6u_A

Probab=99.90  E-value=2e-23  Score=183.61  Aligned_cols=110  Identities=26%  Similarity=0.519  Sum_probs=102.5

Q ss_pred             ceeeeCCCeEEEEEecCCCCCCCCCCEEEEEEEEEEcCCCeeeccCcCCCCcceeecCCCCchhhhHHHHHhcCCcCcEE
Q 017811           46 EVEVLHEKVTKQIIKEGHGQKPSKYSTCFLHYRAWAESTRHKFDDTWLEQQPLEMVLGKEKKEMTGLAIGVSSMKAGEHA  125 (365)
Q Consensus        46 ~~~~~~~gv~k~v~~~G~g~~p~~g~~v~v~y~~~~~~~g~~fd~s~~~~~p~~f~lg~~~~~i~g~e~~l~~Mk~GE~~  125 (365)
                      ++.++++|++++++++|+|..|..||.|+|||++++.+ |++||+++.++.|++|.+|   ++|+||+++|.+|++|+++
T Consensus       115 ~v~~~~sGl~y~vl~~G~G~~p~~gD~V~V~Y~g~l~d-G~vfdss~~~g~p~~f~lg---~vI~G~eeaL~gMk~Gek~  190 (224)
T 1q6h_A          115 GVKTSSTGLVYQVVEAGKGEAPKDSDTVVVNYKGTLID-GKEFDNSYTRGEPLSFRLD---GVIPGWTEGLKNIKKGGKI  190 (224)
T ss_dssp             TEEECTTSCEEEEEECCSSCCCCTTCEEEEEEEEEETT-SCEEEEGGGGTSCEEEEGG---GSCHHHHHHGGGSCTTCEE
T ss_pred             CeEECCCceEEEEEecccCccccCCCEEEEEEEEEeCC-CCEEeeccccCCCEEEEcC---CcchhHHHHHcCCCCCCEE
Confidence            47778999999999999999999999999999999987 9999999888889999996   7899999999999999999


Q ss_pred             EEEeccccccCCCCCCCCCCCCCCCcEEEEEEEEeee
Q 017811          126 LLHVGWELGYGKEGSFSFPNVSPMADLVYEVVLIGFD  162 (365)
Q Consensus       126 ~~~i~~~~~yg~~g~~~~~~ip~~~~l~~~iel~~~~  162 (365)
                      +|+|||.++||..+.   +.||||++|+|+|+|+++.
T Consensus       191 ~v~IP~~laYG~~g~---~~IPp~stLiF~VeL~~ik  224 (224)
T 1q6h_A          191 KLVIPPELAYGKAGV---PGIPPNSTLVFDVELLDVK  224 (224)
T ss_dssp             EEEECGGGTTTTTCB---TTBCTTCCEEEEEEEEEEC
T ss_pred             EEEECchhhcCcCCC---CCCCCCCEEEEEEEEEEeC
Confidence            999999999999886   3599999999999999873

>1u79_A FKBP-type peptidyl-prolyl CIS-trans isomerase 3; TFKBP13, FK-506 binding protein; 1.85A {Arabidopsis thaliana} SCOP: d.26.1.1 PDB: 1y0o_A

Probab=99.90  E-value=8.5e-24  Score=171.49  Aligned_cols=115  Identities=23%  Similarity=0.315  Sum_probs=104.2

Q ss_pred             CceeeeCCCeEEEEEecCCCCCCCCCCEEEEEEEEEEcCCCeeeccCcCCCCcceeecCCCCchhhhHHHHHhc------
Q 017811           45 SEVEVLHEKVTKQIIKEGHGQKPSKYSTCFLHYRAWAESTRHKFDDTWLEQQPLEMVLGKEKKEMTGLAIGVSS------  118 (365)
Q Consensus        45 ~~~~~~~~gv~k~v~~~G~g~~p~~g~~v~v~y~~~~~~~g~~fd~s~~~~~p~~f~lg~~~~~i~g~e~~l~~------  118 (365)
                      ..+.++++||+|+++++|+|..|..||.|+|||++++.+ |++||+++.+++|+.|.+|.+ ++|+||+.+|.+      
T Consensus         5 ~~~~~~~~Gl~~~~l~~G~G~~~~~gd~V~v~Y~g~~~d-G~~fdss~~~~~p~~f~lG~~-~~i~G~~~~L~G~~~~~~   82 (129)
T 1u79_A            5 CEFSVSPSGLAFCDKVVGYGPEAVKGQLIKAHYVGKLEN-GKVFDSSYNRGKPLTFRIGVG-EVIKGWDQGILGSDGIPP   82 (129)
T ss_dssp             CCCEECTTSCEEEEEECCSSCBCCTTCEEEEEEEEECTT-SCEEEEHHHHTSCEEEETTSS-SSCHHHHHHHHCBTTBCC
T ss_pred             CccEECCCCeEEEEEEcCCCCCCCCCCEEEEEEEEEECC-CCEEEecCCCCCCEEEEeCCC-CccHHHHHHhcccccccc
Confidence            457788999999999999999999999999999999876 999999987678999999998 899999999988      


Q ss_pred             CCcCcEEEEEeccccccCCCCCC---CCCCCCCCCcEEEEEEEEee
Q 017811          119 MKAGEHALLHVGWELGYGKEGSF---SFPNVSPMADLVYEVVLIGF  161 (365)
Q Consensus       119 Mk~GE~~~~~i~~~~~yg~~g~~---~~~~ip~~~~l~~~iel~~~  161 (365)
                      |++||+++|.|||.++||+.+..   ..+.||||++|+|+|+|+++
T Consensus        83 m~~Ge~~~v~ip~~~aYG~~~~~~~~~~~~Ip~~~~l~f~vel~~i  128 (129)
T 1u79_A           83 MLTGGKRTLRIPPELAYGDRGAGCKGGSCLIPPASVLLFDIEYIGK  128 (129)
T ss_dssp             CBTTCEEEEEECGGGTTGGGCEEEETTEEEECTTCCEEEEEEEEEE
T ss_pred             cCCCCEEEEEEChHHccCCCCCCccccCCcCCCCCeEEEEEEEEEe
Confidence            99999999999999999998751   01469999999999999876

>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans}

Probab=99.90  E-value=1.5e-23  Score=175.85  Aligned_cols=156  Identities=26%  Similarity=0.341  Sum_probs=127.6

Q ss_pred             HHHHHHHHHHhhhhhhhhhhhhhHHHHHHHHHHHHHhhccchhh-hhhhhHHHHHHHhhchhhhHHHHHHHHhcCHHHHH
Q 017811          175 VEERIGAADRRKMDGNALFKEEKLEEAMQQYEMAIAYMGDDFMF-QLFGKYRDMALAVKNPCHLNMAACLLKLKRYEEAI  253 (365)
Q Consensus       175 ~~e~~~~a~~~k~~G~~~~~~~~y~~A~~~y~~al~~~~~~~~~-~~~~~~~~~~~~~~~~~~~nla~~~~kl~~~~~A~  253 (365)
                      .+++++.+..++..|+.+++.|+|.+|+..|.+||.+.+..... ................+|+|+|.||+++|+|++|+
T Consensus         4 ~~e~~~~a~~~~~~G~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~A~   83 (162)
T 3rkv_A            4 EDDKLKSVEALRQKGNELFVQKDYKEAIDAYRDALTRLDTLILREKPGEPEWVELDRKNIPLYANMSQCYLNIGDLHEAE   83 (162)
T ss_dssp             ----CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSCTTSHHHHHHHHTHHHHHHHHHHHHHHHTCHHHHH
T ss_pred             hHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHH
Confidence            35678899999999999999999999999999999995432110 01111222334555678999999999999999999


Q ss_pred             HHHHHHHhCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCcH-HHHHHHHHHHHHHHHHHHHHHHHHhcccC
Q 017811          254 GQCSLVLGEDENNVKALFRRGKARAELGQTDAAREDFLKAGKFAPEDK-SIARELRLLAEHEKAVYKKQKEIYKGIFG  330 (365)
Q Consensus       254 ~~~~~aL~~~p~n~ka~~~~g~a~~~l~~~~~A~~~l~~al~l~P~n~-~~~~~l~~l~~~~~~~~~~~k~~y~kmf~  330 (365)
                      .+|+++|.++|+++++|+++|.+|..+|+|++|+.+|++++.++|+|. .+...+..|...++++.++++++|++||+
T Consensus        84 ~~~~~al~~~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~~l~~~~~~~~~~~~~~k~~~~~~f~  161 (162)
T 3rkv_A           84 ETSSEVLKREETNEKALFRRAKARIAAWKLDEAEEDLKLLLRNHPAAASVVAREMKIVTERRAEKKADSRVTYSKMFQ  161 (162)
T ss_dssp             HHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHHHHTTSSCC-------
T ss_pred             HHHHHHHhcCCcchHHHHHHHHHHHHHhcHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence            999999999999999999999999999999999999999999999999 88999999999999999999999999996

>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans}

Probab=99.86  E-value=4.8e-21  Score=154.53  Aligned_cols=114  Identities=23%  Similarity=0.361  Sum_probs=109.1

Q ss_pred             HHHHHhhhhhhhhhhhhhHHHHHHHHHHHHHhhccchhhhhhhhHHHHHHHhhchhhhHHHHHHHHhcCHHHHHHHHHHH
Q 017811          180 GAADRRKMDGNALFKEEKLEEAMQQYEMAIAYMGDDFMFQLFGKYRDMALAVKNPCHLNMAACLLKLKRYEEAIGQCSLV  259 (365)
Q Consensus       180 ~~a~~~k~~G~~~~~~~~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~kl~~~~~A~~~~~~a  259 (365)
                      +.++.++++|+.+|+.|+|.+|+..|++||++.|.+..                 +++|+|.||.++|+|++|+.+|+++
T Consensus        11 ~~a~~~~~~G~~~~~~g~~~~A~~~~~~al~~~p~~~~-----------------~~~~~~~~~~~~~~~~~A~~~~~~a   73 (126)
T 4gco_A           11 ELAQEEKNKGNEYFKKGDYPTAMRHYNEAVKRDPENAI-----------------LYSNRAACLTKLMEFQRALDDCDTC   73 (126)
T ss_dssp             HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHH-----------------HHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHH-----------------HHHHHhhHHHhhccHHHHHHHHHHH
Confidence            56889999999999999999999999999999998744                 4999999999999999999999999


Q ss_pred             HhCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCcHHHHHHHHHH
Q 017811          260 LGEDENNVKALFRRGKARAELGQTDAAREDFLKAGKFAPEDKSIARELRLL  310 (365)
Q Consensus       260 L~~~p~n~ka~~~~g~a~~~l~~~~~A~~~l~~al~l~P~n~~~~~~l~~l  310 (365)
                      |+++|+++++|+++|.+|..+|++++|+.+|+++++++|+|..++..|+.|
T Consensus        74 l~~~p~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~l~P~~~~a~~~l~~~  124 (126)
T 4gco_A           74 IRLDSKFIKGYIRKAACLVAMREWSKAQRAYEDALQVDPSNEEAREGVRNC  124 (126)
T ss_dssp             HHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred             HHhhhhhhHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCcCCHHHHHHHHHh
Confidence            999999999999999999999999999999999999999999999988876

>1q1c_A FK506-binding protein 4; rotamase, TPR repeat, nuclear protein, phosphorylation, isomerase; 1.90A {Homo sapiens} SCOP: d.26.1.1 d.26.1.1 PDB: 1n1a_A 1rot_A 1rou_A

Probab=99.86  E-value=2.8e-21  Score=176.66  Aligned_cols=111  Identities=33%  Similarity=0.549  Sum_probs=103.4

Q ss_pred             eCCCeEEEEEecCCCCC-CCCCCEEEEEEEEEEcCCCeeeccCcCCCCcceeecCCCCchhhhHHHHHhcCCcCcEEEEE
Q 017811           50 LHEKVTKQIIKEGHGQK-PSKYSTCFLHYRAWAESTRHKFDDTWLEQQPLEMVLGKEKKEMTGLAIGVSSMKAGEHALLH  128 (365)
Q Consensus        50 ~~~gv~k~v~~~G~g~~-p~~g~~v~v~y~~~~~~~g~~fd~s~~~~~p~~f~lg~~~~~i~g~e~~l~~Mk~GE~~~~~  128 (365)
                      .++||+|+++++|.|.. |..||.|+|||++++.+ |++||+++.++.|++|.+|.+ ++|+||+.+|.+|++||++.|+
T Consensus        49 ~~~gl~~~vl~~G~G~~~~~~gd~V~v~Y~g~~~d-G~~fdss~~~~~p~~f~lG~g-~vi~G~e~aL~gm~~Ge~~~v~  126 (280)
T 1q1c_A           49 QDEGVLKVIKREGTGTEMPMIGDRVFVHYTGWLLD-GTKFDSSLDRKDKFSFDLGKG-EVIKAWDIAIATMKVGEVCHIT  126 (280)
T ss_dssp             CSSSEEEEEEECCSSSCCCCTTCEEEEEEEEEETT-SCEEEESTTSSSCEEEETTTT-SSCHHHHHHHTTCCTTCEEEEE
T ss_pred             CCCceEEEEEeCCCCCcCCCCCCEEEEEEEEEECC-CCEEEecccCCCCEEEEECCc-ChhHHHHHHHhcCCCCCEEEEE
Confidence            36799999999999995 99999999999999977 999999987778999999999 8999999999999999999999


Q ss_pred             eccccccCCCCCCCCCCCCCCCcEEEEEEEEeeecC
Q 017811          129 VGWELGYGKEGSFSFPNVSPMADLVYEVVLIGFDET  164 (365)
Q Consensus       129 i~~~~~yg~~g~~~~~~ip~~~~l~~~iel~~~~~~  164 (365)
                      |||.++||..|.  ++.||++++|+|+|+|+++...
T Consensus       127 ipp~~aYG~~g~--~~~Ip~~~~lvf~Vel~~i~~~  160 (280)
T 1q1c_A          127 CKPEYAYGSAGS--PPKIPPNATLVFEVELFEFKGE  160 (280)
T ss_dssp             ECGGGTTTTTCB--TTTBCTTCCEEEEEEEEEEECE
T ss_pred             ECcHHhCCCcCc--cCCCCCCCcEEEEEEeeeeccc
Confidence            999999999887  4789999999999999988753

>2pbc_A FK506-binding protein 2; endoplasmic reticulum, isomerase, polymorphism, rotamase, structural genomics, structural genomics consortium, SGC; 1.80A {Homo sapiens}

Probab=99.85  E-value=2.7e-21  Score=150.27  Aligned_cols=97  Identities=31%  Similarity=0.486  Sum_probs=89.3

Q ss_pred             CCCCCCCCEEEEEEEEEEcCCCeeeccCcCCCCcceeecCCCCchhhhHHHHHhcCCcCcEEEEEeccccccCCCCCCCC
Q 017811           64 GQKPSKYSTCFLHYRAWAESTRHKFDDTWLEQQPLEMVLGKEKKEMTGLAIGVSSMKAGEHALLHVGWELGYGKEGSFSF  143 (365)
Q Consensus        64 g~~p~~g~~v~v~y~~~~~~~g~~fd~s~~~~~p~~f~lg~~~~~i~g~e~~l~~Mk~GE~~~~~i~~~~~yg~~g~~~~  143 (365)
                      |..|..||.|+|||++++.+ |++||+++.++.|+.|.+|.+ ++|+||+.+|.+|++||++.|.|||.++||+.+.  .
T Consensus         3 g~~~~~gd~V~v~y~~~~~d-G~~~d~s~~~~~p~~f~lG~~-~~i~g~~~~l~gm~~Ge~~~v~ip~~~ayG~~~~--~   78 (102)
T 2pbc_A            3 PIKSRKGDVLHMHYTGKLED-GTEFDSSLPQNQPFVFSLGTG-QVIKGWDQGLLGMCEGEKRKLVIPSELGYGERGA--P   78 (102)
T ss_dssp             CCCCCTTCEEEEEEEEECTT-SCEEEESTTTTCCEEEETTSS-SSCHHHHTTSTTCCTTCEEEEEECGGGTTTTTCB--T
T ss_pred             CCcCCCCCEEEEEEEEEECC-CCEEEeCCCCCCCEEEEeCCC-CccHHHHHHHhCCCCCCEEEEEECHHHCcCCCCC--C
Confidence            45789999999999999866 999999987778999999998 8999999999999999999999999999999886  3


Q ss_pred             CCCCCCCcEEEEEEEEeeecC
Q 017811          144 PNVSPMADLVYEVVLIGFDET  164 (365)
Q Consensus       144 ~~ip~~~~l~~~iel~~~~~~  164 (365)
                      +.||||++++|+|+|+++...
T Consensus        79 ~~Ip~~~~l~f~v~l~~v~~~   99 (102)
T 2pbc_A           79 PKIPGGATLVFEVELLKIERR   99 (102)
T ss_dssp             TTBCTTCCEEEEEEEEEEGGG
T ss_pred             CCcCcCCeEEEEEEEEEeccc
Confidence            679999999999999998764

>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1

Probab=99.85  E-value=4e-20  Score=160.09  Aligned_cols=176  Identities=31%  Similarity=0.418  Sum_probs=135.9

Q ss_pred             EEEeeecCcccccCCCCCHHHHHHHHHHhhhhhhhhhhhhhHHHHHHHHHHHHHhhccchhhhhhhhHHHHHHHhhchhh
Q 017811          157 VLIGFDETKEGKARSDMTVEERIGAADRRKMDGNALFKEEKLEEAMQQYEMAIAYMGDDFMFQLFGKYRDMALAVKNPCH  236 (365)
Q Consensus       157 el~~~~~~~~~~~~~~~~~~e~~~~a~~~k~~G~~~~~~~~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~  236 (365)
                      .+..+.+..   ..|.++.++....+..+...|+.++..|+|.+|+..|.+++.+.|.+..+... ........+...++
T Consensus        16 ~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~-~~~~~~~~~~~~~~   91 (198)
T 2fbn_A           16 NLYFQGAKK---SIYDYTDEEKVQSAFDIKEEGNEFFKKNEINEAIVKYKEALDFFIHTEEWDDQ-ILLDKKKNIEISCN   91 (198)
T ss_dssp             ------CCC---SGGGCCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCTTCCCH-HHHHHHHHHHHHHH
T ss_pred             hhhhccccC---chhhCCHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcccccchh-hHHHHHHHHHHHHH
Confidence            344455544   49999999999999999999999999999999999999999998876532111 01112233445789


Q ss_pred             hHHHHHHHHhcCHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHHHH
Q 017811          237 LNMAACLLKLKRYEEAIGQCSLVLGEDENNVKALFRRGKARAELGQTDAAREDFLKAGKFAPEDKSIARELRLLAEHEKA  316 (365)
Q Consensus       237 ~nla~~~~kl~~~~~A~~~~~~aL~~~p~n~ka~~~~g~a~~~l~~~~~A~~~l~~al~l~P~n~~~~~~l~~l~~~~~~  316 (365)
                      +|+|.||+++|+|++|+.+|++++.++|.+.++++++|.+|..+|+|++|+..|++++.++|++..+...+..+...+++
T Consensus        92 ~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~  171 (198)
T 2fbn_A           92 LNLATCYNKNKDYPKAIDHASKVLKIDKNNVKALYKLGVANMYFGFLEEAKENLYKAASLNPNNLDIRNSYELCVNKLKE  171 (198)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHhcCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHhcccCCCCCcc
Q 017811          317 VYKKQKEIYKGIFGPRPEPK  336 (365)
Q Consensus       317 ~~~~~k~~y~kmf~~~~~~~  336 (365)
                      ..+..+..|.+||+......
T Consensus       172 ~~~~~~~~~~~~f~~~~~~~  191 (198)
T 2fbn_A          172 ARKKDKLTFGGMFDKGPLYE  191 (198)
T ss_dssp             HHC-----------------
T ss_pred             HHHHHHHHHHHHhcccchhh
Confidence            99999999999998766443

>2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8

Probab=99.84  E-value=1.1e-20  Score=157.22  Aligned_cols=142  Identities=18%  Similarity=0.163  Sum_probs=121.0

Q ss_pred             CHHHHHHHHHHhhhhhhhhhhhhhHHHHHHHHHHHHHhhccchhhhhhhhHHHHHHHhhchhhhHHHHHHHHhcCHHHHH
Q 017811          174 TVEERIGAADRRKMDGNALFKEEKLEEAMQQYEMAIAYMGDDFMFQLFGKYRDMALAVKNPCHLNMAACLLKLKRYEEAI  253 (365)
Q Consensus       174 ~~~e~~~~a~~~k~~G~~~~~~~~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~kl~~~~~A~  253 (365)
                      .+-.....+..++..|+.+++.|+|++|+..|++||++.|.++......     .......+|+|+|.|+.++|+|++|+
T Consensus         3 ~~~~~~~~a~~~~~~G~~l~~~g~~eeAi~~Y~kAL~l~p~~~~~~a~~-----~~~~~a~a~~n~g~al~~Lgr~~eAl   77 (159)
T 2hr2_A            3 KPLKEVVGAYLALSDAQRQLVAGEYDEAAANCRRAMEISHTMPPEEAFD-----HAGFDAFCHAGLAEALAGLRSFDEAL   77 (159)
T ss_dssp             CHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCTTSCCC-----HHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred             ccHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCCcchhhhh-----hccchHHHHHHHHHHHHHCCCHHHHH
Confidence            3334467889999999999999999999999999999999843210000     01112337999999999999999999


Q ss_pred             HHHHHHHhC-------CCCCHHHH----HHHHHHHHHcCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHHHHHHHH
Q 017811          254 GQCSLVLGE-------DENNVKAL----FRRGKARAELGQTDAAREDFLKAGKFAPEDKSIARELRLLAEHEKAVYKK  320 (365)
Q Consensus       254 ~~~~~aL~~-------~p~n~ka~----~~~g~a~~~l~~~~~A~~~l~~al~l~P~n~~~~~~l~~l~~~~~~~~~~  320 (365)
                      .+|+++|++       +|++.++|    |++|.++..+|+|++|+.+|+++++++|++..+...+..+++..++..++
T Consensus        78 ~~~~kAL~l~n~~~e~~pd~~~A~~~~~~~rG~aL~~lgr~eEAl~~y~kAlel~p~d~~~~~~~~~~~~~~~~~~~k  155 (159)
T 2hr2_A           78 HSADKALHYFNRRGELNQDEGKLWISAVYSRALALDGLGRGAEAMPEFKKVVEMIEERKGETPGKERMMEVAIDRIAQ  155 (159)
T ss_dssp             HHHHHHHHHHHHHCCTTSTHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHCCSCCTTHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHhhhccccCCCchHHHHHHHHHhHHHHHHHCCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHH
Confidence            999999999       99999999    99999999999999999999999999999999999999888877776554

>3jxv_A 70 kDa peptidyl-prolyl isomerase; FKBP- binding domain five-stranded anti-parallel beta-sheet alpha-helix crossing THis sheet; 2.08A {Triticum aestivum} PDB: 3jym_A

Probab=99.82  E-value=4.5e-20  Score=174.96  Aligned_cols=111  Identities=29%  Similarity=0.403  Sum_probs=101.2

Q ss_pred             CCCeEEEEEecCCCC-CCCCCCEEEEEEEEEEcCCCeeeccCc-CCCCcceeecCCCCchhhhHHHHHhcCCcCcEEEEE
Q 017811           51 HEKVTKQIIKEGHGQ-KPSKYSTCFLHYRAWAESTRHKFDDTW-LEQQPLEMVLGKEKKEMTGLAIGVSSMKAGEHALLH  128 (365)
Q Consensus        51 ~~gv~k~v~~~G~g~-~p~~g~~v~v~y~~~~~~~g~~fd~s~-~~~~p~~f~lg~~~~~i~g~e~~l~~Mk~GE~~~~~  128 (365)
                      +.+++++++++|.|. .|..||.|+|||++++.+ |++||++. .+++|+.|.+|.+ ++|+||+.+|.+|++||++.|+
T Consensus       243 d~~~~~~i~~~g~g~~~~~~gd~V~v~y~g~l~d-G~~fd~~~~~~~~p~~f~~G~g-~~i~G~e~~l~gm~~Ge~~~v~  320 (356)
T 3jxv_A          243 DKKILKKVLKEXEGYERPNEGAVVTVKITGKLQD-GTVFLKKGHDEQEPFEFKTDEE-AVIEGLDRAVLNMKKGEVALVT  320 (356)
T ss_dssp             TCCEEEEEEECCBSSCCCCTTCEEEEEEEEEESS-SCEEEEESCTTSCCCEEETTTT-SSCHHHHHHHTTCCBTCEEEEE
T ss_pred             ccceeEEeeecccccCCCCCCCEEEEEEEEEECC-CCEEeeccccCCcCEEEEECCC-ccchHHHHHHhCCCCCCEEEEE
Confidence            468999999999995 899999999999999987 89999884 5678999999999 8999999999999999999999


Q ss_pred             eccccccCCCCCCCCCCCCCCCcEEEEEEEEeeec
Q 017811          129 VGWELGYGKEGSFSFPNVSPMADLVYEVVLIGFDE  163 (365)
Q Consensus       129 i~~~~~yg~~g~~~~~~ip~~~~l~~~iel~~~~~  163 (365)
                      |||.++||..+....+.||||++|+|+|+|+++.+
T Consensus       321 ip~~~aYG~~~~~~~~~Ip~~~~l~f~vel~~~~~  355 (356)
T 3jxv_A          321 IPPEYAYGSTESKQDAIVPPNSTVIYEVELVSFVK  355 (356)
T ss_dssp             ECGGGTTTTSCEESSSEECTTCCEEEEEEEEEEEC
T ss_pred             EChHHccCCCCcCCCCcCCcCCeEEEEEEEEEEEc
Confidence            99999999887533467999999999999999864

>3jxv_A 70 kDa peptidyl-prolyl isomerase; FKBP- binding domain five-stranded anti-parallel beta-sheet alpha-helix crossing THis sheet; 2.08A {Triticum aestivum} PDB: 3jym_A

Probab=99.82  E-value=5.9e-22  Score=187.91  Aligned_cols=117  Identities=29%  Similarity=0.505  Sum_probs=2.1

Q ss_pred             CceeeeCCCeEEEEEecCCCC-CCCCCCEEEEEEEEEEcCCCeeeccCcCCCCcceeecCCCCchhhhHHHHHhcCCcCc
Q 017811           45 SEVEVLHEKVTKQIIKEGHGQ-KPSKYSTCFLHYRAWAESTRHKFDDTWLEQQPLEMVLGKEKKEMTGLAIGVSSMKAGE  123 (365)
Q Consensus        45 ~~~~~~~~gv~k~v~~~G~g~-~p~~g~~v~v~y~~~~~~~g~~fd~s~~~~~p~~f~lg~~~~~i~g~e~~l~~Mk~GE  123 (365)
                      ++..++++||+|+++++|+|. .|..||.|+|||++++.+ |++||+|+.++.|+.|.+|.+ ++|+||+.+|.+|++||
T Consensus         4 ~~~~~~~~Gl~~~i~~~G~G~~~~~~gd~V~v~Y~g~~~d-G~~fdss~~~~~p~~~~lG~g-~~i~g~e~~l~gm~~Ge   81 (356)
T 3jxv_A            4 EENEIGKQGLKKKLLKEGEGWDTPEVGDEVEVHYTGTLLD-GKKFDSSRDRDDTFKFKLGQG-QVIKGWDQGIKTMKKGE   81 (356)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             ccceECCCCeEEEEEEeecCCccCCCCCEEEEEEEEEECC-CCEEEEcccCCCcEEEEeCCC-ccchHHHHHHhcCCCCC
Confidence            456778899999999999995 899999999999999987 999999988889999999999 89999999999999999


Q ss_pred             EEEEEeccccccCCCCCCCCCCCCCCCcEEEEEEEEeeecCc
Q 017811          124 HALLHVGWELGYGKEGSFSFPNVSPMADLVYEVVLIGFDETK  165 (365)
Q Consensus       124 ~~~~~i~~~~~yg~~g~~~~~~ip~~~~l~~~iel~~~~~~~  165 (365)
                      ++.|+|||.++||..|.  .+.||||++|+|+|+|+++....
T Consensus        82 ~~~~~ip~~~aYG~~g~--~~~Ip~~~~l~f~vel~~~~~~~  121 (356)
T 3jxv_A           82 NALFTIPPELAYGESGS--PPTIPANATLQFDVELLSWTSVR  121 (356)
T ss_dssp             --------------------------------------CCEE
T ss_pred             EEEEEEChHHhCCCCCC--CCCcCCCCEEEEEeeEEeeeccc
Confidence            99999999999999987  46899999999999999986543

>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A

Probab=99.80  E-value=5.2e-19  Score=168.81  Aligned_cols=157  Identities=31%  Similarity=0.427  Sum_probs=133.1

Q ss_pred             CCHHHHHHHHHHhhhhhhhhhhhhhHHHHHHHHHHHHHhhccchhhhhhhhHHHHHHHhhchhhhHHHHHHHHhcCHHHH
Q 017811          173 MTVEERIGAADRRKMDGNALFKEEKLEEAMQQYEMAIAYMGDDFMFQLFGKYRDMALAVKNPCHLNMAACLLKLKRYEEA  252 (365)
Q Consensus       173 ~~~~e~~~~a~~~k~~G~~~~~~~~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~kl~~~~~A  252 (365)
                      .+.++.+..+..++..|+.+++.|+|.+|+..|++|+.+.+..... ...+...........+|+|+|.||+++++|++|
T Consensus       214 ~~~~~~~~~a~~~~~~g~~~~~~g~~~~Ai~~y~kAl~~~~~~~~~-~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A  292 (370)
T 1ihg_A          214 KDVDKILLISEDLKNIGNTFFKSQNWEMAIKKYTKVLRYVEGSRAA-AEDADGAKLQPVALSCVLNIGACKLKMSDWQGA  292 (370)
T ss_dssp             TCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHH-SCHHHHGGGHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred             ccHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhcCccc-cChHHHHHHHHHHHHHHHHHHHHHHhccCHHHH
Confidence            3578899999999999999999999999999999999976653100 000111112334466899999999999999999


Q ss_pred             HHHHHHHHhCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHHHHHHHHHHHHHhcccC
Q 017811          253 IGQCSLVLGEDENNVKALFRRGKARAELGQTDAAREDFLKAGKFAPEDKSIARELRLLAEHEKAVYKKQKEIYKGIFG  330 (365)
Q Consensus       253 ~~~~~~aL~~~p~n~ka~~~~g~a~~~l~~~~~A~~~l~~al~l~P~n~~~~~~l~~l~~~~~~~~~~~k~~y~kmf~  330 (365)
                      +.+|+++|+++|+++++|+++|.+|..+|+|++|+.+|++|++++|++..++..+..+...++++.++++..|++||+
T Consensus       293 ~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~eA~~~l~~Al~l~P~~~~~~~~l~~~~~~~~~~~~a~k~~~~kmf~  370 (370)
T 1ihg_A          293 VDSCLEALEIDPSNTKALYRRAQGWQGLKEYDQALADLKKAQEIAPEDKAIQAELLKVKQKIKAQKDKEKAAYAKMFA  370 (370)
T ss_dssp             HHHHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHHHHCCC-----
T ss_pred             HHHHHHHHHhCchhHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhC
Confidence            999999999999999999999999999999999999999999999999999999999999999999999999999984

>1q1c_A FK506-binding protein 4; rotamase, TPR repeat, nuclear protein, phosphorylation, isomerase; 1.90A {Homo sapiens} SCOP: d.26.1.1 d.26.1.1 PDB: 1n1a_A 1rot_A 1rou_A

Probab=99.78  E-value=1.4e-18  Score=158.81  Aligned_cols=108  Identities=24%  Similarity=0.413  Sum_probs=97.2

Q ss_pred             eCCCeEEEEEecCCCC-CCCCCCEEEEEEEEEEcCCCeeeccCcCCCCcceeecCCCCc---hhhhHHHHHhcCCcCcEE
Q 017811           50 LHEKVTKQIIKEGHGQ-KPSKYSTCFLHYRAWAESTRHKFDDTWLEQQPLEMVLGKEKK---EMTGLAIGVSSMKAGEHA  125 (365)
Q Consensus        50 ~~~gv~k~v~~~G~g~-~p~~g~~v~v~y~~~~~~~g~~fd~s~~~~~p~~f~lg~~~~---~i~g~e~~l~~Mk~GE~~  125 (365)
                      .++|+.++++++|.|. .|..||.|+|||++++ + |++||+     .|+.|.+|.+ +   +|+||+.+|.+|++||++
T Consensus       166 ~d~gl~~~il~~G~G~~~~~~gd~V~i~y~g~~-d-G~~fd~-----~~~~f~lG~g-~~~~~i~G~e~~l~gmk~Ge~~  237 (280)
T 1q1c_A          166 EDGGIIRRIQTRGEGYAKPNEGAIVEVALEGYY-K-DKLFDQ-----RELRFEIGEG-ENLDLPYGLERAIQRMEKGEHS  237 (280)
T ss_dssp             CSSSEEEEEEECCSCSCCCCTTCEEEEEEEEEE-T-TEEEEE-----EEEEEETTCG-GGGTCCHHHHHHHTTCCTTCEE
T ss_pred             cccceeEEeeecccccccccCCceEEEEEEEEe-C-CEEEec-----CCeEEEecCC-cccccchhHHHHHhCCCCCcEE
Confidence            3568999999999998 7999999999999998 5 899997     3899999998 6   599999999999999999


Q ss_pred             EEEeccccccCCCCCCCCCCCCCCCcEEEEEEEEeeecCcc
Q 017811          126 LLHVGWELGYGKEGSFSFPNVSPMADLVYEVVLIGFDETKE  166 (365)
Q Consensus       126 ~~~i~~~~~yg~~g~~~~~~ip~~~~l~~~iel~~~~~~~~  166 (365)
                      .|+|||.++||..+.. ...||||++++|+|+|+++...++
T Consensus       238 ~v~ip~~~~yG~~~~~-~~~IP~~~~l~f~V~L~~i~~~~~  277 (280)
T 1q1c_A          238 IVYLKPSYAFGSVGKE-KFQIPPNAELKYELHLKSFEKAKE  277 (280)
T ss_dssp             EEEECGGGTTTTTCBG-GGTBCTTCCEEEEEEEEEEECCCC
T ss_pred             EEEEChhHcCCcCCCc-cCccCCCCeEEEEEEEEEEeCCCC
Confidence            9999999999998752 125999999999999999998765

>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans}

Probab=99.77  E-value=4.1e-18  Score=137.34  Aligned_cols=115  Identities=23%  Similarity=0.265  Sum_probs=102.8

Q ss_pred             HHHHHHHhhhhhhhhhhhhhHHHHHHHHHHHHHhhccchhhhhhhhHHHHHHHhhchhhhHHHHHHHHhcCHHHHHHHHH
Q 017811          178 RIGAADRRKMDGNALFKEEKLEEAMQQYEMAIAYMGDDFMFQLFGKYRDMALAVKNPCHLNMAACLLKLKRYEEAIGQCS  257 (365)
Q Consensus       178 ~~~~a~~~k~~G~~~~~~~~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~kl~~~~~A~~~~~  257 (365)
                      ..+.|..+++.|+.+++.|+|++|+..|++||++.|.+..                 +|+|+|.||+++|+|++|+.+|+
T Consensus         4 ~~d~A~a~~~lG~~~~~~~~~~~A~~~y~~Al~~~p~~~~-----------------~~~nlg~~~~~~~~~~~A~~~~~   66 (127)
T 4gcn_A            4 MTDAAIAEKDLGNAAYKQKDFEKAHVHYDKAIELDPSNIT-----------------FYNNKAAVYFEEKKFAECVQFCE   66 (127)
T ss_dssp             HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHH-----------------HHHHHHHHHHHTTCHHHHHHHHH
T ss_pred             cHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHH-----------------HHHhHHHHHHHhhhHHHHHHHHH
Confidence            4567889999999999999999999999999999998644                 49999999999999999999999


Q ss_pred             HHHhCCCCC-------HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCcHHHHHHHHHH
Q 017811          258 LVLGEDENN-------VKALFRRGKARAELGQTDAAREDFLKAGKFAPEDKSIARELRLL  310 (365)
Q Consensus       258 ~aL~~~p~n-------~ka~~~~g~a~~~l~~~~~A~~~l~~al~l~P~n~~~~~~l~~l  310 (365)
                      ++|+++|++       .++|+++|.++..+|+|++|+..|++++.++|+ ++....|..+
T Consensus        67 ~al~~~~~~~~~~~~~a~~~~~lg~~~~~~~~~~~A~~~~~kal~~~~~-~~~~~~l~~l  125 (127)
T 4gcn_A           67 KAVEVGRETRADYKLIAKAMSRAGNAFQKQNDLSLAVQWFHRSLSEFRD-PELVKKVKEL  125 (127)
T ss_dssp             HHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSCC-HHHHHHHHHH
T ss_pred             HHHHhCcccchhhHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcC-HHHHHHHHHh
Confidence            999999876       469999999999999999999999999999885 5555555443

>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae}

Probab=99.76  E-value=1.1e-17  Score=133.52  Aligned_cols=116  Identities=23%  Similarity=0.322  Sum_probs=109.4

Q ss_pred             HHHHhhhhhhhhhhhhhHHHHHHHHHHHHHhhccchhhhhhhhHHHHHHHhhchhhhHHHHHHHHhcCHHHHHHHHHHHH
Q 017811          181 AADRRKMDGNALFKEEKLEEAMQQYEMAIAYMGDDFMFQLFGKYRDMALAVKNPCHLNMAACLLKLKRYEEAIGQCSLVL  260 (365)
Q Consensus       181 ~a~~~k~~G~~~~~~~~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~kl~~~~~A~~~~~~aL  260 (365)
                      .+..+...|+.+++.|+|.+|+..|.+++.+.|.+..                 +++++|.||+++|+|++|+.+|++++
T Consensus         3 ~a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~-----------------~~~~~a~~~~~~~~~~~A~~~~~~al   65 (126)
T 3upv_A            3 KAEEARLEGKEYFTKSDWPNAVKAYTEMIKRAPEDAR-----------------GYSNRAAALAKLMSFPEAIADCNKAI   65 (126)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHH-----------------HHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCChH-----------------HHHHHHHHHHHhcCHHHHHHHHHHHH
Confidence            5778999999999999999999999999999998643                 49999999999999999999999999


Q ss_pred             hCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC------CCcHHHHHHHHHHHHH
Q 017811          261 GEDENNVKALFRRGKARAELGQTDAAREDFLKAGKFA------PEDKSIARELRLLAEH  313 (365)
Q Consensus       261 ~~~p~n~ka~~~~g~a~~~l~~~~~A~~~l~~al~l~------P~n~~~~~~l~~l~~~  313 (365)
                      +++|+++.+++++|.++..+|++++|+..|++++.++      |++..+...+..+...
T Consensus        66 ~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~p~~~~~~~~l~~~~~~  124 (126)
T 3upv_A           66 EKDPNFVRAYIRKATAQIAVKEYASALETLDAARTKDAEVNNGSSAREIDQLYYKASQQ  124 (126)
T ss_dssp             HHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHTTTTHHHHHHHHHHHHHH
T ss_pred             HhCCCcHHHHHHHHHHHHHHhCHHHHHHHHHHHHHhCcccCCchhHHHHHHHHHHHHHh
Confidence            9999999999999999999999999999999999999      9999999998887654

>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus}

Probab=99.71  E-value=1.2e-16  Score=133.78  Aligned_cols=121  Identities=22%  Similarity=0.225  Sum_probs=109.0

Q ss_pred             HHHHHhhhhhhhhhhhhhHHHHHHHHHHHHHhhccchhhhhhhhHHHHHHHhhchhhhHHHHHHHHhcCHHHHHHHHHHH
Q 017811          180 GAADRRKMDGNALFKEEKLEEAMQQYEMAIAYMGDDFMFQLFGKYRDMALAVKNPCHLNMAACLLKLKRYEEAIGQCSLV  259 (365)
Q Consensus       180 ~~a~~~k~~G~~~~~~~~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~kl~~~~~A~~~~~~a  259 (365)
                      ..+..+...|..++..|+|.+|+..|.+++.+.|.+..                 +++++|.||+++|+|++|+.+|+++
T Consensus         9 ~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~-----------------~~~~l~~~~~~~g~~~~A~~~~~~a   71 (164)
T 3sz7_A            9 PESDKLKSEGNAAMARKEYSKAIDLYTQALSIAPANPI-----------------YLSNRAAAYSASGQHEKAAEDAELA   71 (164)
T ss_dssp             HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHH-----------------HHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred             hhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCcCHH-----------------HHHHHHHHHHHccCHHHHHHHHHHH
Confidence            46788999999999999999999999999999998643                 4999999999999999999999999


Q ss_pred             HhCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCcHH--HHHHHHHHHHHHHHH
Q 017811          260 LGEDENNVKALFRRGKARAELGQTDAAREDFLKAGKFAPEDKS--IARELRLLAEHEKAV  317 (365)
Q Consensus       260 L~~~p~n~ka~~~~g~a~~~l~~~~~A~~~l~~al~l~P~n~~--~~~~l~~l~~~~~~~  317 (365)
                      +.++|+++.+|+++|.+|..+|++++|+..|++++.++|++..  +...+..+..++.+.
T Consensus        72 l~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~l~~~~~~~~~~  131 (164)
T 3sz7_A           72 TVVDPKYSKAWSRLGLARFDMADYKGAKEAYEKGIEAEGNGGSDAMKRGLETTKRKIEEA  131 (164)
T ss_dssp             HHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHSSSCCHHHHHHHHHHHHHHHHH
T ss_pred             HHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHHHHHHH
Confidence            9999999999999999999999999999999999999999877  555555555554443

>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A

Probab=99.71  E-value=2.2e-16  Score=131.41  Aligned_cols=105  Identities=15%  Similarity=0.217  Sum_probs=99.8

Q ss_pred             HHHHHhhhhhhhhhhhhhHHHHHHHHHHHHHhhccchhhhhhhhHHHHHHHhhchhhhHHHHHHHHhcCHHHHHHHHHHH
Q 017811          180 GAADRRKMDGNALFKEEKLEEAMQQYEMAIAYMGDDFMFQLFGKYRDMALAVKNPCHLNMAACLLKLKRYEEAIGQCSLV  259 (365)
Q Consensus       180 ~~a~~~k~~G~~~~~~~~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~kl~~~~~A~~~~~~a  259 (365)
                      +.+..+...|..++..|+|++|+..|++++.+.|.+..+                 ++++|.||..+|+|++|+.+|+++
T Consensus        34 ~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~P~~~~~-----------------~~~lg~~~~~~g~~~~Ai~~~~~a   96 (151)
T 3gyz_A           34 DMMDDIYSYAYDFYNKGRIEEAEVFFRFLCIYDFYNVDY-----------------IMGLAAIYQIKEQFQQAADLYAVA   96 (151)
T ss_dssp             HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHH-----------------HHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHH-----------------HHHHHHHHHHHccHHHHHHHHHHH
Confidence            456788999999999999999999999999999987553                 999999999999999999999999


Q ss_pred             HhCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCcH
Q 017811          260 LGEDENNVKALFRRGKARAELGQTDAAREDFLKAGKFAPEDK  301 (365)
Q Consensus       260 L~~~p~n~ka~~~~g~a~~~l~~~~~A~~~l~~al~l~P~n~  301 (365)
                      +.++|+++.+|+++|.+|..+|++++|+..|++++++.|+.+
T Consensus        97 l~l~P~~~~~~~~lg~~~~~lg~~~eA~~~~~~al~l~~~~~  138 (151)
T 3gyz_A           97 FALGKNDYTPVFHTGQCQLRLKAPLKAKECFELVIQHSNDEK  138 (151)
T ss_dssp             HHHSSSCCHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCHH
T ss_pred             HhhCCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCHH
Confidence            999999999999999999999999999999999999999865

>4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A*

Probab=99.70  E-value=2.8e-17  Score=136.32  Aligned_cols=133  Identities=14%  Similarity=0.059  Sum_probs=114.7

Q ss_pred             hhhhhhhhhhHHHHHHHHHHHHHhhccchhhhhhhhHHHHHHHhhchhhhHHHHHHHHhcCHHHHHHHHHHHHhCCCCCH
Q 017811          188 DGNALFKEEKLEEAMQQYEMAIAYMGDDFMFQLFGKYRDMALAVKNPCHLNMAACLLKLKRYEEAIGQCSLVLGEDENNV  267 (365)
Q Consensus       188 ~G~~~~~~~~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~kl~~~~~A~~~~~~aL~~~p~n~  267 (365)
                      .|..+..+|++++|+..|++++...|....                 .++++|.+|+++|+|++|+.+++++|+++|+++
T Consensus         3 LG~~~~~~~~~e~ai~~~~~a~~~~p~~~~-----------------~~~~la~~y~~~~~~~~A~~~~~~al~~~p~~~   65 (150)
T 4ga2_A            3 LGSMRRSKADVERYIASVQGSTPSPRQKSI-----------------KGFYFAKLYYEAKEYDLAKKYICTYINVQERDP   65 (150)
T ss_dssp             ----CCCHHHHHHHHHHHHHHSCSHHHHHT-----------------THHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCH
T ss_pred             hHHHHHHcChHHHHHHHHHHhcccCcccHH-----------------HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH
Confidence            578888999999999999999988776432                 488999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCCCccc
Q 017811          268 KALFRRGKARAELGQTDAAREDFLKAGKFAPEDKSIARELRLLAEHEKAVYKKQKEIYKGIFGPRPEPKQ  337 (365)
Q Consensus       268 ka~~~~g~a~~~l~~~~~A~~~l~~al~l~P~n~~~~~~l~~l~~~~~~~~~~~k~~y~kmf~~~~~~~~  337 (365)
                      .+|+.+|.+|..+|++++|+..|+++++++|++..+...++.+....++..++.+..+.+.+...|+...
T Consensus        66 ~a~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~aa~~~~~~al~l~P~~~~  135 (150)
T 4ga2_A           66 KAHRFLGLLYELEENTDKAVECYRRSVELNPTQKDLVLKIAELLCKNDVTDGRAKYWVERAAKLFPGSPA  135 (150)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCSSSSHHHHHHHHHHHHSTTCHH
T ss_pred             HHHHHHHHHHHHcCchHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhCcCCHH
Confidence            9999999999999999999999999999999999999999998887777766666666788877776554

>4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A*

Probab=99.68  E-value=1.7e-16  Score=131.48  Aligned_cols=116  Identities=9%  Similarity=0.027  Sum_probs=105.2

Q ss_pred             HHHHHhhhhhhhhhhhhhHHHHHHHHHHHHHhhccchhhhhhhhHHHHHHHhhchhhhHHHHHHHHhcCHHHHHHHHHHH
Q 017811          180 GAADRRKMDGNALFKEEKLEEAMQQYEMAIAYMGDDFMFQLFGKYRDMALAVKNPCHLNMAACLLKLKRYEEAIGQCSLV  259 (365)
Q Consensus       180 ~~a~~~k~~G~~~~~~~~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~kl~~~~~A~~~~~~a  259 (365)
                      +....+...|..|++.|+|++|+..|+++|++.|.+..                 +++++|.||.++|++++|+.+|+++
T Consensus        29 ~~~~~~~~la~~y~~~~~~~~A~~~~~~al~~~p~~~~-----------------a~~~lg~~~~~~~~~~~A~~~~~~a   91 (150)
T 4ga2_A           29 QKSIKGFYFAKLYYEAKEYDLAKKYICTYINVQERDPK-----------------AHRFLGLLYELEENTDKAVECYRRS   91 (150)
T ss_dssp             HHHTTHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHH-----------------HHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred             ccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHH-----------------HHHHHHHHHHHcCchHHHHHHHHHH
Confidence            44556778999999999999999999999999998754                 4999999999999999999999999


Q ss_pred             HhCCCCCHHHHHHHHHHHHHcCCHHHHHHH-HHHHHhhCCCcHHHHHHHHHHHH
Q 017811          260 LGEDENNVKALFRRGKARAELGQTDAARED-FLKAGKFAPEDKSIARELRLLAE  312 (365)
Q Consensus       260 L~~~p~n~ka~~~~g~a~~~l~~~~~A~~~-l~~al~l~P~n~~~~~~l~~l~~  312 (365)
                      ++++|+++.+++++|.+|..+|++++|... +++|++++|+|+.+...+..+..
T Consensus        92 l~~~p~~~~~~~~la~~~~~~~~~~~aa~~~~~~al~l~P~~~~~~~l~~~ll~  145 (150)
T 4ga2_A           92 VELNPTQKDLVLKIAELLCKNDVTDGRAKYWVERAAKLFPGSPAVYKLKEQLLD  145 (150)
T ss_dssp             HHHCTTCHHHHHHHHHHHHHHCSSSSHHHHHHHHHHHHSTTCHHHHHHHHHHHH
T ss_pred             HHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhCcCCHHHHHHHHHHHH
Confidence            999999999999999999999999887765 59999999999999887776644

>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A

Probab=99.68  E-value=6.2e-16  Score=126.50  Aligned_cols=122  Identities=20%  Similarity=0.195  Sum_probs=109.4

Q ss_pred             HHHHHhhhhhhhhhhhhhHHHHHHHHHHHHHhhccchhhhhhhhHHHHHHHhhchhhhHHHHHHHHhcCHHHHHHHHHHH
Q 017811          180 GAADRRKMDGNALFKEEKLEEAMQQYEMAIAYMGDDFMFQLFGKYRDMALAVKNPCHLNMAACLLKLKRYEEAIGQCSLV  259 (365)
Q Consensus       180 ~~a~~~k~~G~~~~~~~~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~kl~~~~~A~~~~~~a  259 (365)
                      ..+..+...|..++..|+|.+|+..|.+++...|.+..                 +++++|.||..+|+|++|+..|+++
T Consensus        16 ~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~-----------------~~~~lg~~~~~~g~~~~A~~~~~~a   78 (142)
T 2xcb_A           16 DTLEQLYALGFNQYQAGKWDDAQKIFQALCMLDHYDAR-----------------YFLGLGACRQSLGLYEQALQSYSYG   78 (142)
T ss_dssp             HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHH-----------------HHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHccHHHHHHHHHHHHHhCCccHH-----------------HHHHHHHHHHHHhhHHHHHHHHHHH
Confidence            34677889999999999999999999999999998754                 4899999999999999999999999


Q ss_pred             HhCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHHHHHH
Q 017811          260 LGEDENNVKALFRRGKARAELGQTDAAREDFLKAGKFAPEDKSIARELRLLAEHEKAVY  318 (365)
Q Consensus       260 L~~~p~n~ka~~~~g~a~~~l~~~~~A~~~l~~al~l~P~n~~~~~~l~~l~~~~~~~~  318 (365)
                      +.++|+++.+++.+|.+|..+|++++|+..|++++.++|+++........+...++...
T Consensus        79 l~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~l~~l~  137 (142)
T 2xcb_A           79 ALMDINEPRFPFHAAECHLQLGDLDGAESGFYSARALAAAQPAHEALAARAGAMLEAVT  137 (142)
T ss_dssp             HHHCTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTCGGGHHHHHHHHHHHHHHH
T ss_pred             HhcCCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCcchHHHHHHHHHHHHHHH
Confidence            99999999999999999999999999999999999999998877666666655555443

>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A*

Probab=99.67  E-value=5.3e-16  Score=128.30  Aligned_cols=118  Identities=13%  Similarity=0.108  Sum_probs=105.7

Q ss_pred             HHHHHhhhhhhhhhhhhhHHHHHHHHHHHHHhhccchhhhhhhhHHHHHHHhhchhhhHHHHHHHHhcCHHHHHHHHHHH
Q 017811          180 GAADRRKMDGNALFKEEKLEEAMQQYEMAIAYMGDDFMFQLFGKYRDMALAVKNPCHLNMAACLLKLKRYEEAIGQCSLV  259 (365)
Q Consensus       180 ~~a~~~k~~G~~~~~~~~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~kl~~~~~A~~~~~~a  259 (365)
                      ..+..+...|..++..|+|.+|+..|++++...|.+..                 +++++|.||..+|+|++|+..|+++
T Consensus        19 ~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~-----------------~~~~lg~~~~~~g~~~~A~~~~~~a   81 (148)
T 2vgx_A           19 DTLEQLYSLAFNQYQSGXYEDAHXVFQALCVLDHYDSR-----------------FFLGLGACRQAMGQYDLAIHSYSYG   81 (148)
T ss_dssp             HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHH-----------------HHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred             hhHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCcccHH-----------------HHHHHHHHHHHHhhHHHHHHHHHHH
Confidence            45677889999999999999999999999999998754                 3899999999999999999999999


Q ss_pred             HhCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHH
Q 017811          260 LGEDENNVKALFRRGKARAELGQTDAAREDFLKAGKFAPEDKSIARELRLLAEHE  314 (365)
Q Consensus       260 L~~~p~n~ka~~~~g~a~~~l~~~~~A~~~l~~al~l~P~n~~~~~~l~~l~~~~  314 (365)
                      +.++|+++.+++.+|.+|..+|++++|+..|+++++++|+++........+...+
T Consensus        82 l~l~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~l  136 (148)
T 2vgx_A           82 AVMDIXEPRFPFHAAECLLQXGELAEAESGLFLAQELIANXPEFXELSTRVSSML  136 (148)
T ss_dssp             HHHSTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTCGGGHHHHHHHHHHH
T ss_pred             HhcCCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCCcchHHHHHHHHHH
Confidence            9999999999999999999999999999999999999998876655545444433

>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B*

Probab=99.67  E-value=5.4e-16  Score=124.88  Aligned_cols=122  Identities=30%  Similarity=0.346  Sum_probs=111.1

Q ss_pred             HHHHhhhhhhhhhhhhhHHHHHHHHHHHHHhhccchhhhhhhhHHHHHHHhhchhhhHHHHHHHHhcCHHHHHHHHHHHH
Q 017811          181 AADRRKMDGNALFKEEKLEEAMQQYEMAIAYMGDDFMFQLFGKYRDMALAVKNPCHLNMAACLLKLKRYEEAIGQCSLVL  260 (365)
Q Consensus       181 ~a~~~k~~G~~~~~~~~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~kl~~~~~A~~~~~~aL  260 (365)
                      .+..+...|..++..|+|.+|+..|.+++...|.+..                 +++++|.|++.+|+|++|+.++.+++
T Consensus         8 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~-----------------~~~~l~~~~~~~~~~~~A~~~~~~al   70 (137)
T 3q49_B            8 SAQELKEQGNRLFVGRKYPEAAACYGRAITRNPLVAV-----------------YYTNRALCYLKMQQPEQALADCRRAL   70 (137)
T ss_dssp             CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHH-----------------HHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred             cHHHHHHHHHHHHHhCcHHHHHHHHHHHHhhCcCcHH-----------------HHHHHHHHHHHhcCHHHHHHHHHHHH
Confidence            3677899999999999999999999999999998643                 49999999999999999999999999


Q ss_pred             hCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC-----cHHHHHHHHHHHHHHHHHHH
Q 017811          261 GEDENNVKALFRRGKARAELGQTDAAREDFLKAGKFAPE-----DKSIARELRLLAEHEKAVYK  319 (365)
Q Consensus       261 ~~~p~n~ka~~~~g~a~~~l~~~~~A~~~l~~al~l~P~-----n~~~~~~l~~l~~~~~~~~~  319 (365)
                      .++|+++.+++.+|.++..+|++++|+..|++++.++|+     +..+...+..+........+
T Consensus        71 ~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~~~~l~~~~~~~~~~~e  134 (137)
T 3q49_B           71 ELDGQSVKAHFFLGQCQLEMESYDEAIANLQRAYSLAKEQRLNFGDDIPSALRIAKKKRWNSIE  134 (137)
T ss_dssp             HHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCCTTHHHHHHHHHHHHHHHHHH
T ss_pred             HhCchhHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHChhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            999999999999999999999999999999999999998     78888888888766555433

>4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A*

Probab=99.67  E-value=5e-16  Score=160.01  Aligned_cols=142  Identities=16%  Similarity=0.176  Sum_probs=129.9

Q ss_pred             HHHHHHhhhhhhhhhhhhhHHHHHHHHHHHHHhhccchhhhhhhhHHHHHHHhhchhhhHHHHHHHHhcCHHHHHHHHHH
Q 017811          179 IGAADRRKMDGNALFKEEKLEEAMQQYEMAIAYMGDDFMFQLFGKYRDMALAVKNPCHLNMAACLLKLKRYEEAIGQCSL  258 (365)
Q Consensus       179 ~~~a~~~k~~G~~~~~~~~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~kl~~~~~A~~~~~~  258 (365)
                      .+.+..+...|+.+.+.|+|++|+..|++||++.|++..                 +++|||.+|.++|++++|+.+|++
T Consensus         6 P~~a~al~nLG~~~~~~G~~~eAi~~~~kAl~l~P~~~~-----------------a~~nLg~~l~~~g~~~eA~~~~~~   68 (723)
T 4gyw_A            6 PTHADSLNNLANIKREQGNIEEAVRLYRKALEVFPEFAA-----------------AHSNLASVLQQQGKLQEALMHYKE   68 (723)
T ss_dssp             CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHH-----------------HHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred             CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHH-----------------HHHHHHHHHHHcCCHHHHHHHHHH
Confidence            356889999999999999999999999999999998644                 499999999999999999999999


Q ss_pred             HHhCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCCCcccc
Q 017811          259 VLGEDENNVKALFRRGKARAELGQTDAAREDFLKAGKFAPEDKSIARELRLLAEHEKAVYKKQKEIYKGIFGPRPEPKQK  338 (365)
Q Consensus       259 aL~~~p~n~ka~~~~g~a~~~l~~~~~A~~~l~~al~l~P~n~~~~~~l~~l~~~~~~~~~~~k~~y~kmf~~~~~~~~~  338 (365)
                      +|+++|+++.+|+++|.+|..+|++++|+..|++|++++|++..+...++.+...+++..++... |++.+...|+....
T Consensus        69 Al~l~P~~~~a~~nLg~~l~~~g~~~~A~~~~~kAl~l~P~~~~a~~~Lg~~~~~~g~~~eAi~~-~~~Al~l~P~~~~a  147 (723)
T 4gyw_A           69 AIRISPTFADAYSNMGNTLKEMQDVQGALQCYTRAIQINPAFADAHSNLASIHKDSGNIPEAIAS-YRTALKLKPDFPDA  147 (723)
T ss_dssp             HHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHH-HHHHHHHCSCCHHH
T ss_pred             HHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHH-HHHHHHhCCCChHH
Confidence            99999999999999999999999999999999999999999999999999998888887766554 99998888866544

>4dt4_A FKBP-type 16 kDa peptidyl-prolyl CIS-trans isomer; FKBP domain, IF domain, chaperone, peptidyl-prolyl isomerase isomerase; 1.35A {Escherichia coli}

Probab=99.66  E-value=1.2e-16  Score=133.93  Aligned_cols=73  Identities=15%  Similarity=0.248  Sum_probs=67.8

Q ss_pred             CCCCCCEEEEEEEEEEcCCCeeeccCcCCCCcceeecCCCCchhhhHHHHHhcCCcCcEEEEEeccccccCCCCC
Q 017811           66 KPSKYSTCFLHYRAWAESTRHKFDDTWLEQQPLEMVLGKEKKEMTGLAIGVSSMKAGEHALLHVGWELGYGKEGS  140 (365)
Q Consensus        66 ~p~~g~~v~v~y~~~~~~~g~~fd~s~~~~~p~~f~lg~~~~~i~g~e~~l~~Mk~GE~~~~~i~~~~~yg~~g~  140 (365)
                      .+..|+.|+|||++++.+ |++||+|+.+++|+.|.+|.+ ++|+||+.+|.+|++||++.|.|||++|||+...
T Consensus        24 ~i~~gd~V~v~Y~g~l~d-G~vfDss~~~~~P~~f~lG~g-~vipG~eeaL~gm~~Ge~~~v~Ipp~~AYG~~~~   96 (169)
T 4dt4_A           24 SVQSNSAVLVHFTLKLDD-GTTAESTRNNGKPALFRLGDA-SLSEGLEQHLLGLKVGDKTTFSLEPDAAFGVPSP   96 (169)
T ss_dssp             SCCTTCEEEEEEEEEETT-SCEEEEHHHHTSCEEEETTSS-SSCHHHHHHHTTCCTTCEEEEEECGGGTTCCCCG
T ss_pred             cCCCCCEEEEEEEEEECC-CCEEEecCCCCCCEEEEECCC-CccHHHHHHHcCCCCCCEEEEEEChHHhcCCCCh
Confidence            578999999999999987 999999987778999999999 8999999999999999999999999999998643

>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus}

Probab=99.66  E-value=3.5e-15  Score=130.22  Aligned_cols=147  Identities=17%  Similarity=0.087  Sum_probs=113.1

Q ss_pred             HHHhhhhhhhhhhhhhHHHHHHHHHHHHHhhccchhhhhhhhHHHHHHHhhchhhhHHHHHHHHhcCHHHHHHHHHHHHh
Q 017811          182 ADRRKMDGNALFKEEKLEEAMQQYEMAIAYMGDDFMFQLFGKYRDMALAVKNPCHLNMAACLLKLKRYEEAIGQCSLVLG  261 (365)
Q Consensus       182 a~~~k~~G~~~~~~~~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~kl~~~~~A~~~~~~aL~  261 (365)
                      +..+..+|..++..|+|.+|+..|++++...|.+...-... .......+...+++++|.+|.++|++++|+..|+++|+
T Consensus         4 ~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~-~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~   82 (208)
T 3urz_A            4 VDEMLQKVSAAIEAGQNGQAVSYFRQTIALNIDRTEMYYWT-NVDKNSEISSKLATELALAYKKNRNYDKAYLFYKELLQ   82 (208)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCHHHHHHHHHH-HSCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCChHHHHHh-hhcchhhhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence            56678899999999999999999999999998754320000 00000011122344599999999999999999999999


Q ss_pred             CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHHHHHH-HHHHHHHhccc
Q 017811          262 EDENNVKALFRRGKARAELGQTDAAREDFLKAGKFAPEDKSIARELRLLAEHEKAVY-KKQKEIYKGIF  329 (365)
Q Consensus       262 ~~p~n~ka~~~~g~a~~~l~~~~~A~~~l~~al~l~P~n~~~~~~l~~l~~~~~~~~-~~~k~~y~kmf  329 (365)
                      ++|+++.+++.+|.++..+|++++|+..|+++++++|++..+...++.+.....+.. +.....|.+..
T Consensus        83 ~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~~~~~~~~~~~~~~~~~  151 (208)
T 3urz_A           83 KAPNNVDCLEACAEMQVCRGQEKDALRMYEKILQLEADNLAANIFLGNYYYLTAEQEKKKLETDYKKLS  151 (208)
T ss_dssp             HCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHHHHHHHHC---
T ss_pred             HCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHhHHHHHHHHHHHHHHh
Confidence            999999999999999999999999999999999999999999999998865544332 22334455544

>4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis}

Probab=99.64  E-value=4.4e-15  Score=130.59  Aligned_cols=134  Identities=16%  Similarity=0.211  Sum_probs=118.7

Q ss_pred             HHhhhhhhhhhhhhhHHHHHHHHHHHHHhhc-cchhhhhhhhHHHHHHHhhchhhhHHHHHHHHhcCHHHHHHHHHHHHh
Q 017811          183 DRRKMDGNALFKEEKLEEAMQQYEMAIAYMG-DDFMFQLFGKYRDMALAVKNPCHLNMAACLLKLKRYEEAIGQCSLVLG  261 (365)
Q Consensus       183 ~~~k~~G~~~~~~~~y~~A~~~y~~al~~~~-~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~kl~~~~~A~~~~~~aL~  261 (365)
                      ..+...|..++..|+|.+|+..|.+++.+.| .+..                 +++++|.|+..+|+|++|+.++++++.
T Consensus         8 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~-----------------~~~~~~~~~~~~~~~~~A~~~~~~al~   70 (228)
T 4i17_A            8 NQLKNEGNDALNAKNYAVAFEKYSEYLKLTNNQDSV-----------------TAYNCGVCADNIKKYKEAADYFDIAIK   70 (228)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTCCHH-----------------HHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHccCHHHHHHHHHHHHhccCCCCcH-----------------HHHHHHHHHHHhhcHHHHHHHHHHHHH
Confidence            5688899999999999999999999999998 5432                 488899999999999999999999999


Q ss_pred             CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCcH-------HHHHHHHHHHHHHHHHHHHHHHHHhcccCCCCC
Q 017811          262 EDENNVKALFRRGKARAELGQTDAAREDFLKAGKFAPEDK-------SIARELRLLAEHEKAVYKKQKEIYKGIFGPRPE  334 (365)
Q Consensus       262 ~~p~n~ka~~~~g~a~~~l~~~~~A~~~l~~al~l~P~n~-------~~~~~l~~l~~~~~~~~~~~k~~y~kmf~~~~~  334 (365)
                      ++|++..+++.+|.+|..+|++++|+..|+++++++|++.       .+...++.+....+++.++ ...|.+.+...|.
T Consensus        71 ~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A-~~~~~~al~~~p~  149 (228)
T 4i17_A           71 KNYNLANAYIGKSAAYRDMKNNQEYIATLTEGIKAVPGNATIEKLYAIYYLKEGQKFQQAGNIEKA-EENYKHATDVTSK  149 (228)
T ss_dssp             TTCSHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHTTCHHHH-HHHHHHHTTSSCH
T ss_pred             hCcchHHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHhHHHHHhccHHHH-HHHHHHHHhcCCC
Confidence            9999999999999999999999999999999999999998       5577777776666666554 4559999988776

>3pr9_A FKBP-type peptidyl-prolyl CIS-trans isomerase; FKBP protein, chaperone; 1.95A {Methanocaldococcus jannaschii} SCOP: d.26.1.0 PDB: 3pra_A

Probab=99.64  E-value=4.4e-16  Score=129.31  Aligned_cols=71  Identities=23%  Similarity=0.329  Sum_probs=65.1

Q ss_pred             CCCCCEEEEEEEEEEcCCCeeeccCcCC-------------CCcceeecCCCCchhhhHHHHHhcCCcCcEEEEEecccc
Q 017811           67 PSKYSTCFLHYRAWAESTRHKFDDTWLE-------------QQPLEMVLGKEKKEMTGLAIGVSSMKAGEHALLHVGWEL  133 (365)
Q Consensus        67 p~~g~~v~v~y~~~~~~~g~~fd~s~~~-------------~~p~~f~lg~~~~~i~g~e~~l~~Mk~GE~~~~~i~~~~  133 (365)
                      .+.||.|+|||++++ + |++||+|+.+             ..|+.|.+|.+ ++|+||+.+|.+|++||++.|.|||.+
T Consensus         2 i~~Gd~V~v~Y~g~l-d-G~vfDss~~~~a~~~g~~~~~~~~~P~~f~vG~g-~vi~G~eeaL~gm~~Ge~~~v~Ipp~~   78 (157)
T 3pr9_A            2 VEKGKMVKISYDGYV-D-GKLFDTTNEELAKKEGIYNPAMIYGPVAIFAGEG-QVLPGLDEAILEMDVGEEREVVLPPEK   78 (157)
T ss_dssp             CCTTCEEEEEEEEEE-T-TEEEEESCHHHHHHHTCCCTTSCCSCEEEETTSS-SSCHHHHHHHHHCCTTCEEEEEECGGG
T ss_pred             CCCCCEEEEEEEEEE-C-CEEEEeccccccccccccccccCCCCEEEEECCC-cHHHHHHHHHcCCCCCCEEEEEECcHH
Confidence            468999999999999 6 9999999753             37999999999 899999999999999999999999999


Q ss_pred             ccCCCCC
Q 017811          134 GYGKEGS  140 (365)
Q Consensus       134 ~yg~~g~  140 (365)
                      |||+.+.
T Consensus        79 aYG~~~~   85 (157)
T 3pr9_A           79 AFGKRDP   85 (157)
T ss_dssp             TTCCCCG
T ss_pred             hcCCCCh
Confidence            9998764

>1hxv_A Trigger factor; FKBP fold, ppiase, chaperone; NMR {Mycoplasma genitalium} SCOP: d.26.1.1

Probab=99.63  E-value=5.9e-16  Score=121.77  Aligned_cols=86  Identities=17%  Similarity=0.313  Sum_probs=73.6

Q ss_pred             CCCCCCCCEEEEEEEEEEcCCCeeeccCcCCCCcceeecCCCCchhhhHHHHHhcCCcCcEEEEEeccccccCCCCCCCC
Q 017811           64 GQKPSKYSTCFLHYRAWAESTRHKFDDTWLEQQPLEMVLGKEKKEMTGLAIGVSSMKAGEHALLHVGWELGYGKEGSFSF  143 (365)
Q Consensus        64 g~~p~~g~~v~v~y~~~~~~~g~~fd~s~~~~~p~~f~lg~~~~~i~g~e~~l~~Mk~GE~~~~~i~~~~~yg~~g~~~~  143 (365)
                      +..|..||.|+|+|++++ + |++||++.  ..|+.|.+|.+ ++|+||+.+|.+|++||++.|.|++...||..+.   
T Consensus        27 ~~~~~~gD~V~v~Y~g~~-d-G~~fdss~--~~p~~f~lG~g-~vi~G~ee~L~Gmk~Ge~~~v~i~fP~~Yg~~~~---   98 (113)
T 1hxv_A           27 DKKLANGDIAIIDFTGIV-D-NKKLASAS--AQNYELTIGSN-SFIKGFETGLIAMKVNQKKTLALTFPSDYHVKEL---   98 (113)
T ss_dssp             --CCCSSEEEEEEEEEEE-T-TEECSTTC--CSEEEEEETSS-CSCTTHHHHHHTSCSSEEEEECCCCCTTSSSSGG---
T ss_pred             CCCCCCCCEEEEEEEEEE-C-CEEcccCC--ccCEEEEECCC-ChhHHHHHHHCCCCCCCEEEEEEeCchhhCcCCC---
Confidence            446889999999999998 5 99999984  68999999999 8999999999999999999999963333886542   


Q ss_pred             CCCCCCCcEEEEEEEEee
Q 017811          144 PNVSPMADLVYEVVLIGF  161 (365)
Q Consensus       144 ~~ip~~~~l~~~iel~~~  161 (365)
                          ++++++|+|+|+++
T Consensus        99 ----~g~~l~F~V~l~~V  112 (113)
T 1hxv_A           99 ----QSKPVTFEVVLKAI  112 (113)
T ss_dssp             ----GSCCCEEEEEECCB
T ss_pred             ----CCCEEEEEEEEEEE
Confidence                57899999999876

>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1

Probab=99.62  E-value=9.7e-15  Score=113.26  Aligned_cols=114  Identities=18%  Similarity=0.199  Sum_probs=106.7

Q ss_pred             HHHHhhhhhhhhhhhhhHHHHHHHHHHHHHhhccchhhhhhhhHHHHHHHhhchhhhHHHHHHHHhcCHHHHHHHHHHHH
Q 017811          181 AADRRKMDGNALFKEEKLEEAMQQYEMAIAYMGDDFMFQLFGKYRDMALAVKNPCHLNMAACLLKLKRYEEAIGQCSLVL  260 (365)
Q Consensus       181 ~a~~~k~~G~~~~~~~~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~kl~~~~~A~~~~~~aL  260 (365)
                      .+..+...|..++..|+|.+|+..|.+++...|.+..                 +++++|.|+..+|+|++|+..+.+++
T Consensus         3 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~-----------------~~~~~a~~~~~~~~~~~A~~~~~~~~   65 (118)
T 1elw_A            3 QVNELKEKGNKALSVGNIDDALQCYSEAIKLDPHNHV-----------------LYSNRSAAYAKKGDYQKAYEDGCKTV   65 (118)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHH-----------------HHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCcHH-----------------HHHHHHHHHHhhccHHHHHHHHHHHH
Confidence            4677889999999999999999999999999987643                 48999999999999999999999999


Q ss_pred             hCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHH
Q 017811          261 GEDENNVKALFRRGKARAELGQTDAAREDFLKAGKFAPEDKSIARELRLLA  311 (365)
Q Consensus       261 ~~~p~n~ka~~~~g~a~~~l~~~~~A~~~l~~al~l~P~n~~~~~~l~~l~  311 (365)
                      .++|.+..+++.+|.++..+|++++|+..|++++.++|++..+...+..+.
T Consensus        66 ~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~  116 (118)
T 1elw_A           66 DLKPDWGKGYSRKAAALEFLNRFEEAKRTYEEGLKHEANNPQLKEGLQNME  116 (118)
T ss_dssp             HHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTCHHHHHHHHHHH
T ss_pred             HhCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHHcCCCCHHHHHHHHHhh
Confidence            999999999999999999999999999999999999999999988887764

>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus}

Probab=99.61  E-value=3.2e-15  Score=131.32  Aligned_cols=100  Identities=16%  Similarity=0.133  Sum_probs=67.0

Q ss_pred             hhhHHHHHHHHh-----------cCHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCcHHH
Q 017811          235 CHLNMAACLLKL-----------KRYEEAIGQCSLVLGEDENNVKALFRRGKARAELGQTDAAREDFLKAGKFAPEDKSI  303 (365)
Q Consensus       235 ~~~nla~~~~kl-----------~~~~~A~~~~~~aL~~~p~n~ka~~~~g~a~~~l~~~~~A~~~l~~al~l~P~n~~~  303 (365)
                      +++++|.++..+           |++++|+..++++++++|+++.+++.+|.++..+|++++|+..|+++++++ ++..+
T Consensus        75 a~~~lg~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~P~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-~~~~~  153 (217)
T 2pl2_A           75 GYMVLSEAYVALYRQAEDRERGKGYLEQALSVLKDAERVNPRYAPLHLQRGLVYALLGERDKAEASLKQALALE-DTPEI  153 (217)
T ss_dssp             HHHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CCHHH
T ss_pred             HHHHHHHHHHHhhhhhhhhcccccCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCChHHHHHHHHHHHhcc-cchHH
Confidence            466777777777           777777777777777777777777777777777777777777777777777 66667


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHhcccCCCCCcc
Q 017811          304 ARELRLLAEHEKAVYKKQKEIYKGIFGPRPEPK  336 (365)
Q Consensus       304 ~~~l~~l~~~~~~~~~~~k~~y~kmf~~~~~~~  336 (365)
                      ...++.+....++..+.. ..|.+.+...|+..
T Consensus       154 ~~~la~~~~~~g~~~~A~-~~~~~al~~~P~~~  185 (217)
T 2pl2_A          154 RSALAELYLSMGRLDEAL-AQYAKALEQAPKDL  185 (217)
T ss_dssp             HHHHHHHHHHHTCHHHHH-HHHHHHHHHSTTCH
T ss_pred             HHHHHHHHHHcCCHHHHH-HHHHHHHHhCCCCh
Confidence            766776666666555443 33666666555443

>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A

Probab=99.61  E-value=4e-14  Score=117.11  Aligned_cols=118  Identities=24%  Similarity=0.342  Sum_probs=109.8

Q ss_pred             HHHHHHHHHhhhhhhhhhhhhhHHHHHHHHHHHHHhhccchhhhhhhhHHHHHHHhhchhhhHHHHHHHHhcCHHHHHHH
Q 017811          176 EERIGAADRRKMDGNALFKEEKLEEAMQQYEMAIAYMGDDFMFQLFGKYRDMALAVKNPCHLNMAACLLKLKRYEEAIGQ  255 (365)
Q Consensus       176 ~e~~~~a~~~k~~G~~~~~~~~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~kl~~~~~A~~~  255 (365)
                      ......+..+...|..++..|+|.+|+..|.+++...|.+..                 +++++|.|+..+|+|++|+..
T Consensus         7 ~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~~~~~~-----------------~~~~~a~~~~~~~~~~~A~~~   69 (166)
T 1a17_A            7 DGALKRAEELKTQANDYFKAKDYENAIKFYSQAIELNPSNAI-----------------YYGNRSLAYLRTECYGYALGD   69 (166)
T ss_dssp             HHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHH-----------------HHHHHHHHHHHTTCHHHHHHH
T ss_pred             hhHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCChH-----------------HHHHHHHHHHHcCCHHHHHHH
Confidence            456788999999999999999999999999999999887633                 489999999999999999999


Q ss_pred             HHHHHhCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCcHHHHHHHHHH
Q 017811          256 CSLVLGEDENNVKALFRRGKARAELGQTDAAREDFLKAGKFAPEDKSIARELRLL  310 (365)
Q Consensus       256 ~~~aL~~~p~n~ka~~~~g~a~~~l~~~~~A~~~l~~al~l~P~n~~~~~~l~~l  310 (365)
                      +.+++.++|.++.+++.+|.++..+|++++|+..|++++.++|++..+...+..+
T Consensus        70 ~~~a~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~~~  124 (166)
T 1a17_A           70 ATRAIELDKKYIKGYYRRAASNMALGKFRAALRDYETVVKVKPHDKDAKMKYQEC  124 (166)
T ss_dssp             HHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHH
T ss_pred             HHHHHHhCcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Confidence            9999999999999999999999999999999999999999999999888666655

>3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A

Probab=99.61  E-value=1e-14  Score=123.67  Aligned_cols=151  Identities=13%  Similarity=0.113  Sum_probs=99.5

Q ss_pred             HHHhhhhhhhhhhhhhHHHHHHHHHHHHHhhccchhhhh--------hhhHHHHH---HH------hhchhhhHHHHHHH
Q 017811          182 ADRRKMDGNALFKEEKLEEAMQQYEMAIAYMGDDFMFQL--------FGKYRDMA---LA------VKNPCHLNMAACLL  244 (365)
Q Consensus       182 a~~~k~~G~~~~~~~~y~~A~~~y~~al~~~~~~~~~~~--------~~~~~~~~---~~------~~~~~~~nla~~~~  244 (365)
                      +..+...|+.++..|+|++|+..|++||++.|.+...-.        .+...+..   ..      -...++.++|.++.
T Consensus         5 ~~iy~~lG~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~   84 (184)
T 3vtx_A            5 TTIYMDIGDKKRTKGDFDGAIRAYKKVLKADPNNVETLLKLGKTYMDIGLPNDAIESLKKFVVLDTTSAEAYYILGSANF   84 (184)
T ss_dssp             HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCchhHHHHHHHHHHHH
Confidence            566889999999999999999999999999998654200        00110100   00      01234566666666


Q ss_pred             HhcCHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHHHHHHHHHHHH
Q 017811          245 KLKRYEEAIGQCSLVLGEDENNVKALFRRGKARAELGQTDAAREDFLKAGKFAPEDKSIARELRLLAEHEKAVYKKQKEI  324 (365)
Q Consensus       245 kl~~~~~A~~~~~~aL~~~p~n~ka~~~~g~a~~~l~~~~~A~~~l~~al~l~P~n~~~~~~l~~l~~~~~~~~~~~k~~  324 (365)
                      ..++++.|+..+.+++.++|.+..+++.+|.++..+|++++|+..|+++++++|++..+...++.+...+++..++. ..
T Consensus        85 ~~~~~~~a~~~~~~a~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~lg~~~~~~g~~~~A~-~~  163 (184)
T 3vtx_A           85 MIDEKQAAIDALQRAIALNTVYADAYYKLGLVYDSMGEHDKAIEAYEKTISIKPGFIRAYQSIGLAYEGKGLRDEAV-KY  163 (184)
T ss_dssp             HTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHH-HH
T ss_pred             HcCCHHHHHHHHHHHHHhCccchHHHHHHHHHHHHhCCchhHHHHHHHHHHhcchhhhHHHHHHHHHHHCCCHHHHH-HH
Confidence            66666666666666666677777777777777777777777777777777777777777777776666666555443 33


Q ss_pred             HhcccCCCC
Q 017811          325 YKGIFGPRP  333 (365)
Q Consensus       325 y~kmf~~~~  333 (365)
                      |.+.++..|
T Consensus       164 ~~~al~~~p  172 (184)
T 3vtx_A          164 FKKALEKEE  172 (184)
T ss_dssp             HHHHHHTTH
T ss_pred             HHHHHhCCc
Confidence            666665554

>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ...

Probab=99.60  E-value=2.5e-15  Score=143.79  Aligned_cols=136  Identities=12%  Similarity=0.053  Sum_probs=69.7

Q ss_pred             HHHHhhhhhhhhhhhhhHHHHHHHHHHHHHhhccchhhhhhhhHHHHHHHhhchhhhHHHHHHHHhcC-HHHHHHHHHHH
Q 017811          181 AADRRKMDGNALFKEEKLEEAMQQYEMAIAYMGDDFMFQLFGKYRDMALAVKNPCHLNMAACLLKLKR-YEEAIGQCSLV  259 (365)
Q Consensus       181 ~a~~~k~~G~~~~~~~~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~kl~~-~~~A~~~~~~a  259 (365)
                      .+..+...|..+.+.|+|.+|+..|++||.+.|.+..                 +|+++|.++..+|+ +++|+.+|+++
T Consensus        96 ~~~a~~~lg~~~~~~g~~~~Al~~~~~al~l~P~~~~-----------------a~~~~g~~l~~~g~d~~eAl~~~~~a  158 (382)
T 2h6f_A           96 FRDVYDYFRAVLQRDERSERAFKLTRDAIELNAANYT-----------------VWHFRRVLLKSLQKDLHEEMNYITAI  158 (382)
T ss_dssp             HHHHHHHHHHHHHHTCCCHHHHHHHHHHHHHCTTCHH-----------------HHHHHHHHHHHTTCCHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHCCChHHHHHHHHHHHHhCccCHH-----------------HHHHHHHHHHHcccCHHHHHHHHHHH
Confidence            3455666666666667777777777777776666533                 24444444444443 44444444444


Q ss_pred             HhCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCCC
Q 017811          260 LGEDENNVKALFRRGKARAELGQTDAAREDFLKAGKFAPEDKSIARELRLLAEHEKAVYKKQKEIYKGIFGPRPE  334 (365)
Q Consensus       260 L~~~p~n~ka~~~~g~a~~~l~~~~~A~~~l~~al~l~P~n~~~~~~l~~l~~~~~~~~~~~k~~y~kmf~~~~~  334 (365)
                      |.++|++..+|+.+|.++..+|++++|+..|++++.++|+|..++..++.+...++++.+ ....|.+++...|.
T Consensus       159 l~l~P~~~~a~~~~g~~~~~~g~~~eAl~~~~kal~ldP~~~~a~~~lg~~~~~~g~~~e-Al~~~~~al~l~P~  232 (382)
T 2h6f_A          159 IEEQPKNYQVWHHRRVLVEWLRDPSQELEFIADILNQDAKNYHAWQHRQWVIQEFKLWDN-ELQYVDQLLKEDVR  232 (382)
T ss_dssp             HHHCTTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCTT-HHHHHHHHHHHCTT
T ss_pred             HHHCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCccCHHHHHHHHHHHHHcCChHH-HHHHHHHHHHhCCC
Confidence            444444444444444444444444444444444444444444444444444444443332 22224444444443

>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1

Probab=99.60  E-value=2.9e-14  Score=112.53  Aligned_cols=123  Identities=28%  Similarity=0.329  Sum_probs=112.1

Q ss_pred             HHHHHHHHHhhhhhhhhhhhhhHHHHHHHHHHHHHhhccchhhhhhhhHHHHHHHhhchhhhHHHHHHHHhcCHHHHHHH
Q 017811          176 EERIGAADRRKMDGNALFKEEKLEEAMQQYEMAIAYMGDDFMFQLFGKYRDMALAVKNPCHLNMAACLLKLKRYEEAIGQ  255 (365)
Q Consensus       176 ~e~~~~a~~~k~~G~~~~~~~~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~kl~~~~~A~~~  255 (365)
                      ......+..+...|..++..|+|..|+..|.+++...|.+..                 ++.++|.++..+|++++|+..
T Consensus         6 ~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~-----------------~~~~~a~~~~~~~~~~~A~~~   68 (131)
T 2vyi_A            6 EEDSAEAERLKTEGNEQMKVENFEAAVHFYGKAIELNPANAV-----------------YFCNRAAAYSKLGNYAGAVQD   68 (131)
T ss_dssp             -CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHH-----------------HHHHHHHHHHHTTCHHHHHHH
T ss_pred             hcchhhhHHHHHHHHHHHHccCHHHHHHHHHHHHHcCCCCHH-----------------HHHHHHHHHHHhhchHHHHHH
Confidence            345567889999999999999999999999999999887533                 489999999999999999999


Q ss_pred             HHHHHhCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHHH
Q 017811          256 CSLVLGEDENNVKALFRRGKARAELGQTDAAREDFLKAGKFAPEDKSIARELRLLAEHEK  315 (365)
Q Consensus       256 ~~~aL~~~p~n~ka~~~~g~a~~~l~~~~~A~~~l~~al~l~P~n~~~~~~l~~l~~~~~  315 (365)
                      +.+++.++|.+..+++.+|.++..+|++++|+..|++++.++|++..+...+..+....+
T Consensus        69 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~  128 (131)
T 2vyi_A           69 CERAICIDPAYSKAYGRMGLALSSLNKHVEAVAYYKKALELDPDNETYKSNLKIAELKLR  128 (131)
T ss_dssp             HHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHT
T ss_pred             HHHHHhcCccCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHh
Confidence            999999999999999999999999999999999999999999999999888888765543

>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus}

Probab=99.59  E-value=1.5e-14  Score=127.03  Aligned_cols=139  Identities=13%  Similarity=0.044  Sum_probs=110.7

Q ss_pred             HHHhhhhhhhhhhhhhHHHHHHHHHHHHHhhccchhhh--------hh-----------hhHHHHHHH---------hhc
Q 017811          182 ADRRKMDGNALFKEEKLEEAMQQYEMAIAYMGDDFMFQ--------LF-----------GKYRDMALA---------VKN  233 (365)
Q Consensus       182 a~~~k~~G~~~~~~~~y~~A~~~y~~al~~~~~~~~~~--------~~-----------~~~~~~~~~---------~~~  233 (365)
                      +..+...|..++..|++++|+..|++++.+.|.+...-        ..           +...+....         -..
T Consensus        39 ~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~P~~~  118 (217)
T 2pl2_A           39 PEALYWLARTQLKLGLVNPALENGKTLVARTPRYLGGYMVLSEAYVALYRQAEDRERGKGYLEQALSVLKDAERVNPRYA  118 (217)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHHHHCTTCH
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhhhhhhhhcccccCHHHHHHHHHHHHHhCcccH
Confidence            45677899999999999999999999999999864321        01           111111111         113


Q ss_pred             hhhhHHHHHHHHhcCHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHH
Q 017811          234 PCHLNMAACLLKLKRYEEAIGQCSLVLGEDENNVKALFRRGKARAELGQTDAAREDFLKAGKFAPEDKSIARELRLLAEH  313 (365)
Q Consensus       234 ~~~~nla~~~~kl~~~~~A~~~~~~aL~~~p~n~ka~~~~g~a~~~l~~~~~A~~~l~~al~l~P~n~~~~~~l~~l~~~  313 (365)
                      .+++++|.++..+|++++|+..|+++++++ +++.+++.+|.+|..+|++++|+..|+++++++|++..+...+..+...
T Consensus       119 ~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~P~~~~~~~~la~~~~~  197 (217)
T 2pl2_A          119 PLHLQRGLVYALLGERDKAEASLKQALALE-DTPEIRSALAELYLSMGRLDEALAQYAKALEQAPKDLDLRVRYASALLL  197 (217)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHTC
T ss_pred             HHHHHHHHHHHHcCChHHHHHHHHHHHhcc-cchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHH
Confidence            578999999999999999999999999999 9999999999999999999999999999999999999999999988877


Q ss_pred             HHHHHHHH
Q 017811          314 EKAVYKKQ  321 (365)
Q Consensus       314 ~~~~~~~~  321 (365)
                      .++..+..
T Consensus       198 ~g~~~~A~  205 (217)
T 2pl2_A          198 KGKAEEAA  205 (217)
T ss_dssp             --------
T ss_pred             ccCHHHHH
Confidence            77765543

>3prb_A FKBP-type peptidyl-prolyl CIS-trans isomerase; chaperone; 2.20A {Methanocaldococcus jannaschii} PDB: 3prd_A

Probab=99.59  E-value=2.8e-15  Score=131.68  Aligned_cols=71  Identities=23%  Similarity=0.329  Sum_probs=64.9

Q ss_pred             CCCCCEEEEEEEEEEcCCCeeeccCcCC-------------CCcceeecCCCCchhhhHHHHHhcCCcCcEEEEEecccc
Q 017811           67 PSKYSTCFLHYRAWAESTRHKFDDTWLE-------------QQPLEMVLGKEKKEMTGLAIGVSSMKAGEHALLHVGWEL  133 (365)
Q Consensus        67 p~~g~~v~v~y~~~~~~~g~~fd~s~~~-------------~~p~~f~lg~~~~~i~g~e~~l~~Mk~GE~~~~~i~~~~  133 (365)
                      ...||.|+|||++++ + |++||+|+..             +.|+.|.+|.| ++|+||+.+|.+|++||++.|.|||.+
T Consensus         2 i~~Gd~V~v~Y~g~l-d-G~vfDss~~~~A~e~gi~~~~~~~~P~~f~lG~g-~vIpG~eeaL~Gm~vGek~~v~Ippe~   78 (231)
T 3prb_A            2 VEKGKMVKISYDGYV-D-GKLFDTTNEELAKKEGIYNPAMIYGPVAIFAGEG-QVLPGLDEAILEMDVGEEREVVLPPEK   78 (231)
T ss_dssp             CCTTCEEEEEEEEEE-T-TEEEEESCHHHHHHTTCCCTTSCCSCEEEETTSS-SSCHHHHHHHHTCCTTCEEEEEECGGG
T ss_pred             CCCCCEEEEEEEEEE-C-CEEEEeccchhcccccccccccCCCCEEEEeCCC-cHHHHHHHHHcCCCCCCEEEEEeCcHH
Confidence            467999999999999 6 9999999753             37999999999 899999999999999999999999999


Q ss_pred             ccCCCCC
Q 017811          134 GYGKEGS  140 (365)
Q Consensus       134 ~yg~~g~  140 (365)
                      |||+.+.
T Consensus        79 AYGe~~~   85 (231)
T 3prb_A           79 AFGKRDP   85 (231)
T ss_dssp             TTCCCCG
T ss_pred             hcCCCCh
Confidence            9998753

>2kr7_A FKBP-type peptidyl-prolyl CIS-trans isomerase SLY; protein, rotamase; NMR {Helicobacter pylori}

Probab=99.58  E-value=6.6e-15  Score=121.86  Aligned_cols=73  Identities=22%  Similarity=0.346  Sum_probs=66.0

Q ss_pred             CCCCCCEEEEEEEEEEcCCCeeeccCcCCCCcceeecCCCCchhhhHHHHHhcCCcCcEEEEEeccccccCCCCC
Q 017811           66 KPSKYSTCFLHYRAWAESTRHKFDDTWLEQQPLEMVLGKEKKEMTGLAIGVSSMKAGEHALLHVGWELGYGKEGS  140 (365)
Q Consensus        66 ~p~~g~~v~v~y~~~~~~~g~~fd~s~~~~~p~~f~lg~~~~~i~g~e~~l~~Mk~GE~~~~~i~~~~~yg~~g~  140 (365)
                      .+..|+.|+|||++++..+|++||+|+. ..|+.|.+|.+ ++|+||+.+|.+|++|+++.|.|||..+||+.+.
T Consensus         6 ~i~~gd~V~v~Y~g~~~~dG~~fdss~~-~~p~~f~~G~g-~vipg~e~aL~gm~~Ge~~~v~ipp~~aYG~~~~   78 (151)
T 2kr7_A            6 LESIKQAALIEYEVREQGSSIVLDSNIS-KEPLEFIIGTN-QIIAGLEKAVLKAQIGEWEEVVIAPEEAYGVYES   78 (151)
T ss_dssp             CTTSCCEEEEEEEEEESSCSCEEEESTT-TCCEEEETTCC-CSCHHHHHHHTTCCBTCEEEEEECGGGTTCSSCS
T ss_pred             CCCCCCEEEEEEEEEECCCCCEEEeCCC-CcCEEEEECCC-CccHHHHHHHcCCCCCCEEEEEEecHHHcCCCCc
Confidence            4678999999999998723999999965 47999999999 8999999999999999999999999999998754

>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.58  E-value=2.6e-14  Score=115.96  Aligned_cols=117  Identities=31%  Similarity=0.465  Sum_probs=106.6

Q ss_pred             HHHHhhhhhhhhhhhhhHHHHHHHHHHHHHhhccchhhhhhhhHHHHHHHhhchhhhHHHHHHHHhcCHHHHHHHHHHHH
Q 017811          181 AADRRKMDGNALFKEEKLEEAMQQYEMAIAYMGDDFMFQLFGKYRDMALAVKNPCHLNMAACLLKLKRYEEAIGQCSLVL  260 (365)
Q Consensus       181 ~a~~~k~~G~~~~~~~~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~kl~~~~~A~~~~~~aL  260 (365)
                      .+..+...|..++..|+|.+|+..|++++...|.+..              ...+++++|.||..+++|++|+.+|++++
T Consensus        27 ~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~--------------~~~~~~~~a~~~~~~~~~~~A~~~~~~~~   92 (148)
T 2dba_A           27 SVEQLRKEGNELFKCGDYGGALAAYTQALGLDATPQD--------------QAVLHRNRAACHLKLEDYDKAETEASKAI   92 (148)
T ss_dssp             CHHHHHHHHHHHHTTTCHHHHHHHHHHHHTSCCCHHH--------------HHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHcccchH--------------HHHHHHHHHHHHHHHccHHHHHHHHHHHH
Confidence            3577889999999999999999999999999886411              23469999999999999999999999999


Q ss_pred             hCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHH
Q 017811          261 GEDENNVKALFRRGKARAELGQTDAAREDFLKAGKFAPEDKSIARELRLLA  311 (365)
Q Consensus       261 ~~~p~n~ka~~~~g~a~~~l~~~~~A~~~l~~al~l~P~n~~~~~~l~~l~  311 (365)
                      .++|.+..+++.+|.++..+|++++|+..|++++.++|++..+...+..+.
T Consensus        93 ~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~  143 (148)
T 2dba_A           93 EKDGGDVKALYRRSQALEKLGRLDQAVLDLQRCVSLEPKNKVFQEALRNIS  143 (148)
T ss_dssp             HHTSCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHH
T ss_pred             hhCccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHH
Confidence            999999999999999999999999999999999999999999988887664

>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1

Probab=99.58  E-value=9.2e-15  Score=116.52  Aligned_cols=102  Identities=12%  Similarity=0.002  Sum_probs=90.4

Q ss_pred             HhhhhhhhhhhhhhHHHHHHHHHHHHHhhccchhhhhhhhHHHHHHHhhchhhhHHHHHHHHhcCHHHHHHHHHHHHhCC
Q 017811          184 RRKMDGNALFKEEKLEEAMQQYEMAIAYMGDDFMFQLFGKYRDMALAVKNPCHLNMAACLLKLKRYEEAIGQCSLVLGED  263 (365)
Q Consensus       184 ~~k~~G~~~~~~~~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~kl~~~~~A~~~~~~aL~~~  263 (365)
                      .+...|..++..|++.+|+..|++++...|.+..                 +++++|.|+..+|++++|+..++++++++
T Consensus        19 ~~~~~g~~~~~~g~~~~A~~~~~~al~~~P~~~~-----------------a~~~lg~~~~~~g~~~~A~~~~~~al~l~   81 (121)
T 1hxi_A           19 NPMEEGLSMLKLANLAEAALAFEAVCQKEPEREE-----------------AWRSLGLTQAENEKDGLAIIALNHARMLD   81 (121)
T ss_dssp             CHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHH-----------------HHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred             hHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCHH-----------------HHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Confidence            3577899999999999999999999999998754                 49999999999999999999999999999


Q ss_pred             CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCcHH
Q 017811          264 ENNVKALFRRGKARAELGQTDAAREDFLKAGKFAPEDKS  302 (365)
Q Consensus       264 p~n~ka~~~~g~a~~~l~~~~~A~~~l~~al~l~P~n~~  302 (365)
                      |++..+++.+|.+|..+|++++|+..|+++++++|++..
T Consensus        82 P~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~P~~~~  120 (121)
T 1hxi_A           82 PKDIAVHAALAVSHTNEHNANAALASLRAWLLSQPQYEQ  120 (121)
T ss_dssp             TTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHC-------
T ss_pred             CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCCCC
Confidence            999999999999999999999999999999999998753

>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens}

Probab=99.57  E-value=2e-14  Score=114.27  Aligned_cols=116  Identities=23%  Similarity=0.233  Sum_probs=107.6

Q ss_pred             HHHHhhhhhhhhhhhhhHHHHHHHHHHHHHhhccchhhhhhhhHHHHHHHhhchhhhHHHHHHHHhcCHHHHHHHHHHHH
Q 017811          181 AADRRKMDGNALFKEEKLEEAMQQYEMAIAYMGDDFMFQLFGKYRDMALAVKNPCHLNMAACLLKLKRYEEAIGQCSLVL  260 (365)
Q Consensus       181 ~a~~~k~~G~~~~~~~~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~kl~~~~~A~~~~~~aL  260 (365)
                      .+..+...|..++..|+|.+|+..|.+++...|.+..                 +++++|.++..++++++|+.++++++
T Consensus        15 ~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~-----------------~~~~la~~~~~~~~~~~A~~~~~~a~   77 (133)
T 2lni_A           15 LALMVKNKGNECFQKGDYPQAMKHYTEAIKRNPKDAK-----------------LYSNRAACYTKLLEFQLALKDCEECI   77 (133)
T ss_dssp             HHHHHHHHHHHHHHTTCSHHHHHHHHHHHTTCTTCHH-----------------HHHHHHHHHTTTTCHHHHHHHHHHHH
T ss_pred             cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHH-----------------HHHHHHHHHHHhccHHHHHHHHHHHH
Confidence            4677889999999999999999999999999887633                 48999999999999999999999999


Q ss_pred             hCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHH
Q 017811          261 GEDENNVKALFRRGKARAELGQTDAAREDFLKAGKFAPEDKSIARELRLLAEH  313 (365)
Q Consensus       261 ~~~p~n~ka~~~~g~a~~~l~~~~~A~~~l~~al~l~P~n~~~~~~l~~l~~~  313 (365)
                      .++|.+..+++.+|.++..+|++++|+..|++++.++|++..+...+..+...
T Consensus        78 ~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~  130 (133)
T 2lni_A           78 QLEPTFIKGYTRKAAALEAMKDYTKAMDVYQKALDLDSSCKEAADGYQRCMMA  130 (133)
T ss_dssp             HHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCGGGTHHHHHHHHHHHH
T ss_pred             HhCCCchHHHHHHHHHHHHHhhHHHHHHHHHHHHHhCCCchHHHHHHHHHHHH
Confidence            99999999999999999999999999999999999999999888888877543

>2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris}

Probab=99.57  E-value=3.8e-14  Score=112.69  Aligned_cols=117  Identities=10%  Similarity=0.085  Sum_probs=104.6

Q ss_pred             HHhhhhhhhhhhhhhHHHHHHHHHHHHHhhccchhhhhhhhHHHHHHHhhchhhhHHHHHHHHhcCHHHHHHHHHHHHhC
Q 017811          183 DRRKMDGNALFKEEKLEEAMQQYEMAIAYMGDDFMFQLFGKYRDMALAVKNPCHLNMAACLLKLKRYEEAIGQCSLVLGE  262 (365)
Q Consensus       183 ~~~k~~G~~~~~~~~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~kl~~~~~A~~~~~~aL~~  262 (365)
                      ..+...|..++..|+|.+|+..|.+++...|.+...              ..+++++|.|++.+|+|++|+..+.+++..
T Consensus         3 ~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~--------------~~~~~~lg~~~~~~~~~~~A~~~~~~~~~~   68 (129)
T 2xev_A            3 RTAYNVAFDALKNGKYDDASQLFLSFLELYPNGVYT--------------PNALYWLGESYYATRNFQLAEAQFRDLVSR   68 (129)
T ss_dssp             CCHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSSTTH--------------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhCCHHHHHHHHHHHHHHCCCCccc--------------HHHHHHHHHHHHHhccHHHHHHHHHHHHHH
Confidence            346778999999999999999999999999876421              235899999999999999999999999999


Q ss_pred             CCCC---HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHH
Q 017811          263 DENN---VKALFRRGKARAELGQTDAAREDFLKAGKFAPEDKSIARELRLLAEH  313 (365)
Q Consensus       263 ~p~n---~ka~~~~g~a~~~l~~~~~A~~~l~~al~l~P~n~~~~~~l~~l~~~  313 (365)
                      +|++   +.+++.+|.++..+|++++|+..|++++...|++..+...+..+...
T Consensus        69 ~p~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~a~~~l~~l  122 (129)
T 2xev_A           69 YPTHDKAAGGLLKLGLSQYGEGKNTEAQQTLQQVATQYPGSDAARVAQERLQSI  122 (129)
T ss_dssp             CTTSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTSHHHHHHHHHHHHH
T ss_pred             CCCCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHH
Confidence            9999   89999999999999999999999999999999998887777666543

>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ...

Probab=99.57  E-value=1.1e-14  Score=139.23  Aligned_cols=140  Identities=12%  Similarity=0.043  Sum_probs=117.9

Q ss_pred             HHHHhhhhhhhhhhhhh-HHHHHHHHHHHHHhhccchhhhhhhhHHHHHHHhhchhhhHHHHHHHHhcCHHHHHHHHHHH
Q 017811          181 AADRRKMDGNALFKEEK-LEEAMQQYEMAIAYMGDDFMFQLFGKYRDMALAVKNPCHLNMAACLLKLKRYEEAIGQCSLV  259 (365)
Q Consensus       181 ~a~~~k~~G~~~~~~~~-y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~kl~~~~~A~~~~~~a  259 (365)
                      .+..+..+|..+...|+ |.+|+..|++||.+.|.+..                 +|+++|.++..+|+|++|+.+|+++
T Consensus       130 ~~~a~~~~g~~l~~~g~d~~eAl~~~~~al~l~P~~~~-----------------a~~~~g~~~~~~g~~~eAl~~~~ka  192 (382)
T 2h6f_A          130 NYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQPKNYQ-----------------VWHHRRVLVEWLRDPSQELEFIADI  192 (382)
T ss_dssp             CHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCTTCHH-----------------HHHHHHHHHHHHTCCTTHHHHHHHH
T ss_pred             CHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHCCCCHH-----------------HHHHHHHHHHHccCHHHHHHHHHHH
Confidence            35567889999999997 99999999999999998754                 4999999999999999999999999


Q ss_pred             HhCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHHHHH-HH----HHHHHHhcccCCCCC
Q 017811          260 LGEDENNVKALFRRGKARAELGQTDAAREDFLKAGKFAPEDKSIARELRLLAEHEKAV-YK----KQKEIYKGIFGPRPE  334 (365)
Q Consensus       260 L~~~p~n~ka~~~~g~a~~~l~~~~~A~~~l~~al~l~P~n~~~~~~l~~l~~~~~~~-~~----~~k~~y~kmf~~~~~  334 (365)
                      |+++|+|..+|+.+|.++..+|++++|+.+|+++++++|+|..++..++.+...+... .+    .+...|.+.+...|+
T Consensus       193 l~ldP~~~~a~~~lg~~~~~~g~~~eAl~~~~~al~l~P~~~~a~~~lg~~l~~l~~~~~eA~~~~el~~~~~Al~l~P~  272 (382)
T 2h6f_A          193 LNQDAKNYHAWQHRQWVIQEFKLWDNELQYVDQLLKEDVRNNSVWNQRYFVISNTTGYNDRAVLEREVQYTLEMIKLVPH  272 (382)
T ss_dssp             HHHCTTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCSCSHHHHHHHHHHHHHHHHHSTT
T ss_pred             HHhCccCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCcchHHHHHHHHHHHHHHHHHCCC
Confidence            9999999999999999999999999999999999999999999999998887663222 22    224667777776665


Q ss_pred             ccc
Q 017811          335 PKQ  337 (365)
Q Consensus       335 ~~~  337 (365)
                      ...
T Consensus       273 ~~~  275 (382)
T 2h6f_A          273 NES  275 (382)
T ss_dssp             CHH
T ss_pred             CHH
Confidence            543

>2kfw_A FKBP-type peptidyl-prolyl CIS-trans isomerase SLYD; protein, cobalt, copper, cytoplasm, metal- binding, nickel, rotamase, zinc; NMR {Escherichia coli}

Probab=99.56  E-value=1.3e-14  Score=124.66  Aligned_cols=71  Identities=21%  Similarity=0.319  Sum_probs=65.2

Q ss_pred             CCCCCEEEEEEEEEEcCCCeeeccCcCCCCcceeecCCCCchhhhHHHHHhcCCcCcEEEEEeccccccCCCCC
Q 017811           67 PSKYSTCFLHYRAWAESTRHKFDDTWLEQQPLEMVLGKEKKEMTGLAIGVSSMKAGEHALLHVGWELGYGKEGS  140 (365)
Q Consensus        67 p~~g~~v~v~y~~~~~~~g~~fd~s~~~~~p~~f~lg~~~~~i~g~e~~l~~Mk~GE~~~~~i~~~~~yg~~g~  140 (365)
                      +..|+.|+|+|++++.+ |++||+|+. .+|++|.+|.+ ++|+||+.+|.+|++|+++.|+|||..+||+.+.
T Consensus         3 i~~gd~V~v~Y~g~~~d-G~~fdss~~-~~P~~f~lG~g-~vipG~eeaL~Gm~vGe~~~v~Ippe~aYGe~~~   73 (196)
T 2kfw_A            3 VAKDLVVSLAYQVRTED-GVLVDESPV-SAPLDYLHGHG-SLISGLETALEGHEVGDKFDVAVGANDAYGQYDE   73 (196)
T ss_dssp             CCSSCEEEEEEEEEETT-TEEEEECCT-TSCCEEESSSS-SSCHHHHHHHSSSCTTCEEEEECSTTTTSSCCCT
T ss_pred             CCCCCEEEEEEEEEECC-CCEEEecCC-CCCEEEEECCC-CcchHHHHHHcCCCCCCEEEEEeCcHHhcCCCCh
Confidence            56899999999999866 999999965 37999999999 8999999999999999999999999999998754

>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A

Probab=99.56  E-value=4.9e-14  Score=111.35  Aligned_cols=119  Identities=18%  Similarity=0.180  Sum_probs=107.8

Q ss_pred             HHHHHhhhhhhhhhhhhhHHHHHHHHHHHHHhhccchhhhhhhhHHHHHHHhhchhhhHHHHHHHHhcCHHHHHHHHHHH
Q 017811          180 GAADRRKMDGNALFKEEKLEEAMQQYEMAIAYMGDDFMFQLFGKYRDMALAVKNPCHLNMAACLLKLKRYEEAIGQCSLV  259 (365)
Q Consensus       180 ~~a~~~k~~G~~~~~~~~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~kl~~~~~A~~~~~~a  259 (365)
                      +.+..+...|..++..|+|.+|+..|.+++...|.+..                 +++++|.+|..+|+|++|+.++.++
T Consensus         2 ~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~-----------------~~~~la~~~~~~~~~~~A~~~~~~~   64 (131)
T 1elr_A            2 KQALKEKELGNDAYKKKDFDTALKHYDKAKELDPTNMT-----------------YITNQAAVYFEKGDYNKCRELCEKA   64 (131)
T ss_dssp             HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHH-----------------HHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCccHH-----------------HHHHHHHHHHHhccHHHHHHHHHHH
Confidence            35677899999999999999999999999999887533                 4899999999999999999999999


Q ss_pred             HhCCCCC-------HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHHHH
Q 017811          260 LGEDENN-------VKALFRRGKARAELGQTDAAREDFLKAGKFAPEDKSIARELRLLAEHEKA  316 (365)
Q Consensus       260 L~~~p~n-------~ka~~~~g~a~~~l~~~~~A~~~l~~al~l~P~n~~~~~~l~~l~~~~~~  316 (365)
                      +.++|.+       ..+++++|.++..+|++++|+..|++++.+.| +..+...+..+...+++
T Consensus        65 ~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~  127 (131)
T 1elr_A           65 IEVGRENREDYRQIAKAYARIGNSYFKEEKYKDAIHFYNKSLAEHR-TPDVLKKCQQAEKILKE  127 (131)
T ss_dssp             HHHHHHSTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCC-CHHHHHHHHHHHHHHHH
T ss_pred             HhhccccchhHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCC-CHHHHHHHHHHHHHHHH
Confidence            9999887       99999999999999999999999999999999 68888888887666554

>2k8i_A SLYD, peptidyl-prolyl CIS-trans isomerase; ppiase, chaperone, rotamase; NMR {Escherichia coli}

Probab=99.56  E-value=1.3e-14  Score=122.17  Aligned_cols=71  Identities=21%  Similarity=0.319  Sum_probs=65.0

Q ss_pred             CCCCCEEEEEEEEEEcCCCeeeccCcCCCCcceeecCCCCchhhhHHHHHhcCCcCcEEEEEeccccccCCCCC
Q 017811           67 PSKYSTCFLHYRAWAESTRHKFDDTWLEQQPLEMVLGKEKKEMTGLAIGVSSMKAGEHALLHVGWELGYGKEGS  140 (365)
Q Consensus        67 p~~g~~v~v~y~~~~~~~g~~fd~s~~~~~p~~f~lg~~~~~i~g~e~~l~~Mk~GE~~~~~i~~~~~yg~~g~  140 (365)
                      +..|+.|+|+|++++.+ |++||+|+. .+|+.|.+|.+ ++|+||+.+|.+|++||++.|.|||..+||+.+.
T Consensus         3 i~~gd~V~v~Y~g~~~d-G~~fdss~~-~~P~~f~lG~g-~vipG~eeaL~Gm~~Ge~~~v~ippe~aYG~~~~   73 (171)
T 2k8i_A            3 VAKDLVVSLAYQVRTED-GVLVDESPV-SAPLDYLHGHG-SLISGLETALEGHEVGDKFDVAVGANDAYGQYDE   73 (171)
T ss_dssp             CCTTEEEEEEEEEEETT-SCEEEECCS-SSCEEEETTSC-SSCSHHHHHHTTCCTTCEEEEEEETTTSSCCCCT
T ss_pred             CCCCCEEEEEEEEEECC-CCEEeeccC-CcCEEEEECCC-CcchHHHHHHcCCCCCCEEEEEECcHHhcCCCCh
Confidence            56899999999999876 999999865 37999999999 8999999999999999999999999999998743

>4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A*

Probab=99.55  E-value=2e-14  Score=148.19  Aligned_cols=123  Identities=16%  Similarity=0.074  Sum_probs=113.5

Q ss_pred             HHHhhhhhhhhhhhhhHHHHHHHHHHHHHhhccchhhhhhhhHHHHHHHhhchhhhHHHHHHHHhcCHHHHHHHHHHHHh
Q 017811          182 ADRRKMDGNALFKEEKLEEAMQQYEMAIAYMGDDFMFQLFGKYRDMALAVKNPCHLNMAACLLKLKRYEEAIGQCSLVLG  261 (365)
Q Consensus       182 a~~~k~~G~~~~~~~~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~kl~~~~~A~~~~~~aL~  261 (365)
                      +..+...|+.+.+.|+|++|+..|++||++.|++..                 +|+|||.+|..+|++++|+.+|+++|+
T Consensus        43 ~~a~~nLg~~l~~~g~~~eA~~~~~~Al~l~P~~~~-----------------a~~nLg~~l~~~g~~~~A~~~~~kAl~  105 (723)
T 4gyw_A           43 AAAHSNLASVLQQQGKLQEALMHYKEAIRISPTFAD-----------------AYSNMGNTLKEMQDVQGALQCYTRAIQ  105 (723)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHH-----------------HHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHH-----------------HHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence            556788999999999999999999999999998644                 499999999999999999999999999


Q ss_pred             CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHHHHHHHHH
Q 017811          262 EDENNVKALFRRGKARAELGQTDAAREDFLKAGKFAPEDKSIARELRLLAEHEKAVYKKQ  321 (365)
Q Consensus       262 ~~p~n~ka~~~~g~a~~~l~~~~~A~~~l~~al~l~P~n~~~~~~l~~l~~~~~~~~~~~  321 (365)
                      ++|++..+|+++|.+|..+|++++|+..|++|++++|++..+...+..+...+.++.+..
T Consensus       106 l~P~~~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~l~P~~~~a~~~L~~~l~~~g~~~~A~  165 (723)
T 4gyw_A          106 INPAFADAHSNLASIHKDSGNIPEAIASYRTALKLKPDFPDAYCNLAHCLQIVCDWTDYD  165 (723)
T ss_dssp             HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCCTTHH
T ss_pred             hCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHhhhhhHHHhcccHHHHH
Confidence            999999999999999999999999999999999999999999999999887666554443

>1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1

Probab=99.55  E-value=3.9e-14  Score=117.46  Aligned_cols=108  Identities=20%  Similarity=0.174  Sum_probs=96.4

Q ss_pred             hhhhhhhHHHHHHHHHHHHHhhccchhhhhhhhHHHHHHHhhchhhhHHHHHHHHhcCH----------HHHHHHHHHHH
Q 017811          191 ALFKEEKLEEAMQQYEMAIAYMGDDFMFQLFGKYRDMALAVKNPCHLNMAACLLKLKRY----------EEAIGQCSLVL  260 (365)
Q Consensus       191 ~~~~~~~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~kl~~~----------~~A~~~~~~aL  260 (365)
                      ..-+.+.|++|+..|++++++.|.+..                 +++|+|.|+..++++          ++|+..|++||
T Consensus        11 ~~~r~~~feeA~~~~~~Ai~l~P~~ae-----------------a~~n~G~~l~~l~~~~~g~~al~~~~eAi~~le~AL   73 (158)
T 1zu2_A           11 EFDRILLFEQIRQDAENTYKSNPLDAD-----------------NLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEAL   73 (158)
T ss_dssp             SHHHHHHHHHHHHHHHHHHHHCTTCHH-----------------HHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHhHHHHHHHHHHHHHHHCCCCHH-----------------HHHHHHHHHHHhcccchhhhhHhHHHHHHHHHHHHH
Confidence            344678899999999999999999754                 499999999999875          59999999999


Q ss_pred             hCCCCCHHHHHHHHHHHHHcC-----------CHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHHH
Q 017811          261 GEDENNVKALFRRGKARAELG-----------QTDAAREDFLKAGKFAPEDKSIARELRLLAEHEK  315 (365)
Q Consensus       261 ~~~p~n~ka~~~~g~a~~~l~-----------~~~~A~~~l~~al~l~P~n~~~~~~l~~l~~~~~  315 (365)
                      +++|++..+||++|.+|..+|           +|++|+.+|++|++++|++...+..+..+.+...
T Consensus        74 ~ldP~~~~A~~~LG~ay~~lg~l~P~~~~a~g~~~eA~~~~~kAl~l~P~~~~y~~al~~~~ka~e  139 (158)
T 1zu2_A           74 LIDPKKDEAVWCIGNAYTSFAFLTPDETEAKHNFDLATQFFQQAVDEQPDNTHYLKSLEMTAKAPQ  139 (158)
T ss_dssp             HHCTTCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHTHHH
T ss_pred             HhCcCcHHHHHHHHHHHHHhcccCcchhhhhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHhCHh
Confidence            999999999999999999985           8999999999999999999988888887655443

>1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3

Probab=99.54  E-value=4.4e-14  Score=139.14  Aligned_cols=130  Identities=23%  Similarity=0.299  Sum_probs=112.8

Q ss_pred             HHHHHHhhhhhhhhhhhhhHHHHHHHHHHHHHhhccchhhhhhhhHHHHHHHhhchhhhHHHHHHHHhcCHHHHHHHHHH
Q 017811          179 IGAADRRKMDGNALFKEEKLEEAMQQYEMAIAYMGDDFMFQLFGKYRDMALAVKNPCHLNMAACLLKLKRYEEAIGQCSL  258 (365)
Q Consensus       179 ~~~a~~~k~~G~~~~~~~~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~kl~~~~~A~~~~~~  258 (365)
                      .+.+..+...|+.+++.|+|++|+..|++|+++.|.+..                 +++|+|.||.++|+|++|+.++++
T Consensus         3 ~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~~~p~~~~-----------------~~~~lg~~~~~~g~~~~A~~~~~~   65 (477)
T 1wao_1            3 LKRAEELKTQANDYFKAKDYENAIKFYSQAIELNPSNAI-----------------YYGNRSLAYLRTECYGYALGDATR   65 (477)
T ss_dssp             HHHHTTSSSSSSSTTTTTCHHHHHHHHHHHHHHCTTCHH-----------------HHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred             HhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCccHH-----------------HHHHHHHHHHHhcCHHHHHHHHHH
Confidence            356788999999999999999999999999999988643                 499999999999999999999999


Q ss_pred             HHhCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCcHHHHHHHHHH--HHHHHHHHHHHHHHHh
Q 017811          259 VLGEDENNVKALFRRGKARAELGQTDAAREDFLKAGKFAPEDKSIARELRLL--AEHEKAVYKKQKEIYK  326 (365)
Q Consensus       259 aL~~~p~n~ka~~~~g~a~~~l~~~~~A~~~l~~al~l~P~n~~~~~~l~~l--~~~~~~~~~~~k~~y~  326 (365)
                      +++++|+++.+++++|.+|..+|++++|+..|+++++++|++..+...+..+  ...++++.++. ..|.
T Consensus        66 al~l~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~l~~~~~~~~~g~~~~A~-~~~~  134 (477)
T 1wao_1           66 AIELDKKYIKGYYRRAASNMALGKFRAALRDYETVVKVKPHDKDAKMKYQECNKIVKQKAFERAI-AGDE  134 (477)
T ss_dssp             HHHSCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCTTHHHHHHHHHHHHHHHHHCCC------
T ss_pred             HHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHh-cccc
Confidence            9999999999999999999999999999999999999999999999888887  33444444333 3455

>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2

Probab=99.53  E-value=8.8e-14  Score=127.28  Aligned_cols=102  Identities=32%  Similarity=0.370  Sum_probs=97.0

Q ss_pred             HHHhhhhhhhhhhhhhHHHHHHHHHHHHHhhccchhhhhhhhHHHHHHHhhchhhhHHHHHHHHhcCHHHHHHHHHHHHh
Q 017811          182 ADRRKMDGNALFKEEKLEEAMQQYEMAIAYMGDDFMFQLFGKYRDMALAVKNPCHLNMAACLLKLKRYEEAIGQCSLVLG  261 (365)
Q Consensus       182 a~~~k~~G~~~~~~~~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~kl~~~~~A~~~~~~aL~  261 (365)
                      +..+...|+.++..|+|.+|+..|.+|+...|.+..                 +++|+|.||.++|+|++|+.+++++++
T Consensus         4 a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~-----------------~~~~la~~~~~~~~~~~A~~~~~~al~   66 (281)
T 2c2l_A            4 AQELKEQGNRLFVGRKYPEAAACYGRAITRNPLVAV-----------------YYTNRALCYLKMQQPEQALADCRRALE   66 (281)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHH-----------------HHHHHHHHHHHTTCHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCccHH-----------------HHHHHHHHHHHhcCHHHHHHHHHHHHH
Confidence            567889999999999999999999999999998644                 499999999999999999999999999


Q ss_pred             CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCc
Q 017811          262 EDENNVKALFRRGKARAELGQTDAAREDFLKAGKFAPED  300 (365)
Q Consensus       262 ~~p~n~ka~~~~g~a~~~l~~~~~A~~~l~~al~l~P~n  300 (365)
                      ++|+++++++++|.+|..+|++++|+..|++++.++|++
T Consensus        67 ~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~  105 (281)
T 2c2l_A           67 LDGQSVKAHFFLGQCQLEMESYDEAIANLQRAYSLAKEQ  105 (281)
T ss_dssp             SCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHT
T ss_pred             hCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccc
Confidence            999999999999999999999999999999999999976

>4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis}

Probab=99.53  E-value=1.5e-13  Score=120.59  Aligned_cols=118  Identities=16%  Similarity=0.121  Sum_probs=107.6

Q ss_pred             HHhhhhhhhhhhhhhHHHHHHHHHHHHHhhccchhhhhhhhHHHHHHHhhchhhhHHHHHHHHhcCHHHHHHHHHHHHhC
Q 017811          183 DRRKMDGNALFKEEKLEEAMQQYEMAIAYMGDDFMFQLFGKYRDMALAVKNPCHLNMAACLLKLKRYEEAIGQCSLVLGE  262 (365)
Q Consensus       183 ~~~k~~G~~~~~~~~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~kl~~~~~A~~~~~~aL~~  262 (365)
                      ..+...|..++..|+|.+|+..|.+++...|.+..                 ++.++|.+|..+|++++|+..+++++++
T Consensus        43 ~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~-----------------~~~~l~~~~~~~~~~~~A~~~~~~al~~  105 (228)
T 4i17_A           43 VTAYNCGVCADNIKKYKEAADYFDIAIKKNYNLAN-----------------AYIGKSAAYRDMKNNQEYIATLTEGIKA  105 (228)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCSHHH-----------------HHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhhcHHHHHHHHHHHHHhCcchHH-----------------HHHHHHHHHHHcccHHHHHHHHHHHHHH
Confidence            34556899999999999999999999999988533                 4999999999999999999999999999


Q ss_pred             CCCCH-------HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC--cHHHHHHHHHHHHHHHHH
Q 017811          263 DENNV-------KALFRRGKARAELGQTDAAREDFLKAGKFAPE--DKSIARELRLLAEHEKAV  317 (365)
Q Consensus       263 ~p~n~-------ka~~~~g~a~~~l~~~~~A~~~l~~al~l~P~--n~~~~~~l~~l~~~~~~~  317 (365)
                      +|++.       .+|+.+|.++..+|++++|+..|+++++++|+  +..+...++.+....+..
T Consensus       106 ~p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~l~~~~~~~~~~  169 (228)
T 4i17_A          106 VPGNATIEKLYAIYYLKEGQKFQQAGNIEKAEENYKHATDVTSKKWKTDALYSLGVLFYNNGAD  169 (228)
T ss_dssp             STTCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSSCHHHHHHHHHHHHHHHHHHHHH
T ss_pred             CCCcHHHHHHHHHHHHHHhHHHHHhccHHHHHHHHHHHHhcCCCcccHHHHHHHHHHHHHHHHH
Confidence            99999       77999999999999999999999999999999  999999998887665554

>1ix5_A FKBP; ppiase, isomerase; NMR {Methanothermococcusthermolithotrophicus} SCOP: d.26.1.1

Probab=99.52  E-value=9.2e-15  Score=121.02  Aligned_cols=73  Identities=26%  Similarity=0.384  Sum_probs=66.1

Q ss_pred             CCCCCEEEEEEEEEEcCCCeeeccCcC-------------CCCcceeecCCCCchhhhHHHHHhcCCcCcEEEEEecccc
Q 017811           67 PSKYSTCFLHYRAWAESTRHKFDDTWL-------------EQQPLEMVLGKEKKEMTGLAIGVSSMKAGEHALLHVGWEL  133 (365)
Q Consensus        67 p~~g~~v~v~y~~~~~~~g~~fd~s~~-------------~~~p~~f~lg~~~~~i~g~e~~l~~Mk~GE~~~~~i~~~~  133 (365)
                      +..||.|+|||++++.+ |++||+|+.             ...|+.|.+|.+ ++|+||+.+|.+|++||++.|.|||+.
T Consensus         2 i~~gd~V~v~Y~g~~~d-G~~fdss~~~~a~~~g~~~~~~~~~P~~f~~G~g-~vi~G~eeaL~gm~~Ge~~~v~ipp~~   79 (151)
T 1ix5_A            2 VDKGVKIKVDYIGKLES-GDVFDTSIEEVAKEAGIYAPDREYEPLEFVVGEG-QLIQGFEEAVLDMEVGDEKTVKIPAEK   79 (151)
T ss_dssp             CCTTCEEEECCEECCTT-SCCCEESCHHHHHHHTCCCSSCCCCCEEEETTTT-CSCHHHHHHHHTCCTTCCCEEEECTTT
T ss_pred             CCCCCEEEEEEEEEECC-CCEEEecchhhcccccccccccCCCCEEEEECCC-ChhHHHHHHHcCCCCCCEEEEEECcHH
Confidence            57899999999999866 999999963             246999999999 899999999999999999999999999


Q ss_pred             ccCCCCCC
Q 017811          134 GYGKEGSF  141 (365)
Q Consensus       134 ~yg~~g~~  141 (365)
                      |||+.+..
T Consensus        80 aYG~~~~~   87 (151)
T 1ix5_A           80 AYGNRNEM   87 (151)
T ss_dssp             SSCSCCST
T ss_pred             HCCCCCcc
Confidence            99987653

>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A

Probab=99.51  E-value=1.9e-14  Score=119.55  Aligned_cols=120  Identities=15%  Similarity=-0.039  Sum_probs=104.7

Q ss_pred             HHHHHHHHHHHHhhccchhhhhhhhHHHHHHHhhchhhhHHHHHHHHhcCHHHHHHHHHHHHhCCCCCHHHHHHHHHHHH
Q 017811          199 EEAMQQYEMAIAYMGDDFMFQLFGKYRDMALAVKNPCHLNMAACLLKLKRYEEAIGQCSLVLGEDENNVKALFRRGKARA  278 (365)
Q Consensus       199 ~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~kl~~~~~A~~~~~~aL~~~p~n~ka~~~~g~a~~  278 (365)
                      -.+-..|++++.+.|.+..                 +++++|.+++++|+|++|+..|++++.++|.++.+|+.+|.+|.
T Consensus        19 ~~~~~~l~~al~l~p~~~~-----------------~~~~lg~~~~~~g~~~eA~~~~~~al~~~P~~~~~~~~lg~~~~   81 (151)
T 3gyz_A           19 INSGATLKDINAIPDDMMD-----------------DIYSYAYDFYNKGRIEEAEVFFRFLCIYDFYNVDYIMGLAAIYQ   81 (151)
T ss_dssp             HHTSCCTGGGCCSCHHHHH-----------------HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred             HHCCCCHHHHhCCCHHHHH-----------------HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Confidence            3344556677777776533                 49999999999999999999999999999999999999999999


Q ss_pred             HcCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCCCcc
Q 017811          279 ELGQTDAAREDFLKAGKFAPEDKSIARELRLLAEHEKAVYKKQKEIYKGIFGPRPEPK  336 (365)
Q Consensus       279 ~l~~~~~A~~~l~~al~l~P~n~~~~~~l~~l~~~~~~~~~~~k~~y~kmf~~~~~~~  336 (365)
                      .+|+|++|+..|++++.++|+++.+...++.+...+++..++... |.+.+...++..
T Consensus        82 ~~g~~~~Ai~~~~~al~l~P~~~~~~~~lg~~~~~lg~~~eA~~~-~~~al~l~~~~~  138 (151)
T 3gyz_A           82 IKEQFQQAADLYAVAFALGKNDYTPVFHTGQCQLRLKAPLKAKEC-FELVIQHSNDEK  138 (151)
T ss_dssp             HTTCHHHHHHHHHHHHHHSSSCCHHHHHHHHHHHHTTCHHHHHHH-HHHHHHHCCCHH
T ss_pred             HHccHHHHHHHHHHHHhhCCCCcHHHHHHHHHHHHcCCHHHHHHH-HHHHHHhCCCHH
Confidence            999999999999999999999999999999999988888766655 888887776554

>3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A

Probab=99.50  E-value=2.9e-13  Score=114.66  Aligned_cols=121  Identities=12%  Similarity=0.051  Sum_probs=95.8

Q ss_pred             HHHhhhhhhhhhhhhhHHHHHHHHHHHHHhhccchhhhhh--------hhHHH---HH---H---HhhchhhhHHHHHHH
Q 017811          182 ADRRKMDGNALFKEEKLEEAMQQYEMAIAYMGDDFMFQLF--------GKYRD---MA---L---AVKNPCHLNMAACLL  244 (365)
Q Consensus       182 a~~~k~~G~~~~~~~~y~~A~~~y~~al~~~~~~~~~~~~--------~~~~~---~~---~---~~~~~~~~nla~~~~  244 (365)
                      +..+...|..++..|++++|+..+.+++...|.+...-..        .....   ..   .   .....++.++|.+|.
T Consensus        39 ~~~~~~la~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~a~~~~~~~~~~~~~lg~~~~  118 (184)
T 3vtx_A           39 VETLLKLGKTYMDIGLPNDAIESLKKFVVLDTTSAEAYYILGSANFMIDEKQAAIDALQRAIALNTVYADAYYKLGLVYD  118 (184)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccchHHHHHHHHHHH
Confidence            4556778888888888888888888888887765432110        00000   00   0   111346899999999


Q ss_pred             HhcCHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCcHH
Q 017811          245 KLKRYEEAIGQCSLVLGEDENNVKALFRRGKARAELGQTDAAREDFLKAGKFAPEDKS  302 (365)
Q Consensus       245 kl~~~~~A~~~~~~aL~~~p~n~ka~~~~g~a~~~l~~~~~A~~~l~~al~l~P~n~~  302 (365)
                      ++|+|++|+..|+++++++|.++.+++++|.+|..+|++++|+..|++|++++|++..
T Consensus       119 ~~g~~~~A~~~~~~~l~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~a~  176 (184)
T 3vtx_A          119 SMGEHDKAIEAYEKTISIKPGFIRAYQSIGLAYEGKGLRDEAVKYFKKALEKEEKKAK  176 (184)
T ss_dssp             HTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTHHHHH
T ss_pred             HhCCchhHHHHHHHHHHhcchhhhHHHHHHHHHHHCCCHHHHHHHHHHHHhCCccCHH
Confidence            9999999999999999999999999999999999999999999999999999998643

>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans}

Probab=99.50  E-value=5e-14  Score=113.08  Aligned_cols=104  Identities=13%  Similarity=0.055  Sum_probs=95.9

Q ss_pred             hhhhHHHHHHHHhcCHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHH
Q 017811          234 PCHLNMAACLLKLKRYEEAIGQCSLVLGEDENNVKALFRRGKARAELGQTDAAREDFLKAGKFAPEDKSIARELRLLAEH  313 (365)
Q Consensus       234 ~~~~nla~~~~kl~~~~~A~~~~~~aL~~~p~n~ka~~~~g~a~~~l~~~~~A~~~l~~al~l~P~n~~~~~~l~~l~~~  313 (365)
                      ..+.|+|.+|++.|+|++|+..|+++|+++|.++.+|+.+|.+|..+|++++|+.+|+++++++|++..+...++.+...
T Consensus        14 ~~~~~~G~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~   93 (126)
T 4gco_A           14 QEEKNKGNEYFKKGDYPTAMRHYNEAVKRDPENAILYSNRAACLTKLMEFQRALDDCDTCIRLDSKFIKGYIRKAACLVA   93 (126)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHhhHHHhhccHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHH
Confidence            35889999999999999999999999999999999999999999999999999999999999999999999999999988


Q ss_pred             HHHHHHHHHHHHhcccCCCCCcccc
Q 017811          314 EKAVYKKQKEIYKGIFGPRPEPKQK  338 (365)
Q Consensus       314 ~~~~~~~~k~~y~kmf~~~~~~~~~  338 (365)
                      ++++.++.. .|.+.+...|++...
T Consensus        94 ~~~~~~A~~-~~~~al~l~P~~~~a  117 (126)
T 4gco_A           94 MREWSKAQR-AYEDALQVDPSNEEA  117 (126)
T ss_dssp             TTCHHHHHH-HHHHHHHHCTTCHHH
T ss_pred             CCCHHHHHH-HHHHHHHHCcCCHHH
Confidence            888776654 599999888876654

>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A

Probab=99.49  E-value=9.9e-13  Score=102.64  Aligned_cols=114  Identities=26%  Similarity=0.336  Sum_probs=105.5

Q ss_pred             HHHhhhhhhhhhhhhhHHHHHHHHHHHHHhhccchhhhhhhhHHHHHHHhhchhhhHHHHHHHHhcCHHHHHHHHHHHHh
Q 017811          182 ADRRKMDGNALFKEEKLEEAMQQYEMAIAYMGDDFMFQLFGKYRDMALAVKNPCHLNMAACLLKLKRYEEAIGQCSLVLG  261 (365)
Q Consensus       182 a~~~k~~G~~~~~~~~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~kl~~~~~A~~~~~~aL~  261 (365)
                      +..+...|..++..|+|.+|+..|.+++...|.+..                 +++++|.++...|++++|+..+.+++.
T Consensus         9 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~-----------------~~~~la~~~~~~~~~~~A~~~~~~~~~   71 (125)
T 1na0_A            9 AEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAE-----------------AWYNLGNAYYKQGDYDEAIEYYQKALE   71 (125)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHH-----------------HHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCcHH-----------------HHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence            567788999999999999999999999999886532                 488999999999999999999999999


Q ss_pred             CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHH
Q 017811          262 EDENNVKALFRRGKARAELGQTDAAREDFLKAGKFAPEDKSIARELRLLAE  312 (365)
Q Consensus       262 ~~p~n~ka~~~~g~a~~~l~~~~~A~~~l~~al~l~P~n~~~~~~l~~l~~  312 (365)
                      .+|.+..+++.+|.++..+|++++|+..|++++.++|++..+...+..+..
T Consensus        72 ~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~  122 (125)
T 1na0_A           72 LDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAKQNLGNAKQ  122 (125)
T ss_dssp             HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred             hCCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHH
Confidence            999999999999999999999999999999999999999999888887654

>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans}

Probab=99.49  E-value=5.4e-14  Score=110.87  Aligned_cols=98  Identities=20%  Similarity=0.130  Sum_probs=84.8

Q ss_pred             hhhhHHHHHHHHHHHHHh---hccchhhhhhhhHHHHHHHhhchhhhHHHHHHHHhcCHHHHHHHHHHHHhCCCCCHHHH
Q 017811          194 KEEKLEEAMQQYEMAIAY---MGDDFMFQLFGKYRDMALAVKNPCHLNMAACLLKLKRYEEAIGQCSLVLGEDENNVKAL  270 (365)
Q Consensus       194 ~~~~y~~A~~~y~~al~~---~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~kl~~~~~A~~~~~~aL~~~p~n~ka~  270 (365)
                      ..|+|++|+..|++++.+   .|.+                 ..+++++|.||..+|+|++|+..++++++++|+++.++
T Consensus         2 ~~g~~~~A~~~~~~al~~~~~~p~~-----------------~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~   64 (117)
T 3k9i_A            2 VLGLEAQAVPYYEKAIASGLQGKDL-----------------AECYLGLGSTFRTLGEYRKAEAVLANGVKQFPNHQALR   64 (117)
T ss_dssp             -----CCCHHHHHHHHSSCCCHHHH-----------------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHH
T ss_pred             CCCcHHHHHHHHHHHHHcCCCCccH-----------------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchHHH
Confidence            368899999999999998   3443                 33599999999999999999999999999999999999


Q ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHhhCCCcHHHHHHHH
Q 017811          271 FRRGKARAELGQTDAAREDFLKAGKFAPEDKSIARELR  308 (365)
Q Consensus       271 ~~~g~a~~~l~~~~~A~~~l~~al~l~P~n~~~~~~l~  308 (365)
                      +++|.++..+|++++|+..|++++.+.|+++.+.....
T Consensus        65 ~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~  102 (117)
T 3k9i_A           65 VFYAMVLYNLGRYEQGVELLLKIIAETSDDETIQSYKQ  102 (117)
T ss_dssp             HHHHHHHHHHTCHHHHHHHHHHHHHHHCCCHHHHHTHH
T ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHH
Confidence            99999999999999999999999999999987764433

>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B*

Probab=99.49  E-value=4.7e-13  Score=115.83  Aligned_cols=137  Identities=15%  Similarity=0.125  Sum_probs=115.2

Q ss_pred             HHHHHhhhhhhhhhhhhhHHHHHHHHHHHHHhhccchhhhhhhhHHHHHHHhhchhhhHHHHHHHHhcCHHHHHHHHHHH
Q 017811          180 GAADRRKMDGNALFKEEKLEEAMQQYEMAIAYMGDDFMFQLFGKYRDMALAVKNPCHLNMAACLLKLKRYEEAIGQCSLV  259 (365)
Q Consensus       180 ~~a~~~k~~G~~~~~~~~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~kl~~~~~A~~~~~~a  259 (365)
                      ..+..+...|..++..|+|.+|+..|.+++  .+ +                 ..+++++|.+|..+|+|++|+.+|.++
T Consensus         4 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~a~--~~-~-----------------~~~~~~lg~~~~~~g~~~~A~~~~~~a   63 (213)
T 1hh8_A            4 VEAISLWNEGVLAADKKDWKGALDAFSAVQ--DP-H-----------------SRICFNIGCMYTILKNMTEAEKAFTRS   63 (213)
T ss_dssp             HHHHHHHHHHHHHHHTTCHHHHHHHHHTSS--SC-C-----------------HHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHhCCHHHHHHHHHHHc--CC-C-----------------hHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence            345667889999999999999999999985  22 2                 225899999999999999999999999


Q ss_pred             HhCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCcH----------------HHHHHHHHHHHHHHHHHHHHHH
Q 017811          260 LGEDENNVKALFRRGKARAELGQTDAAREDFLKAGKFAPEDK----------------SIARELRLLAEHEKAVYKKQKE  323 (365)
Q Consensus       260 L~~~p~n~ka~~~~g~a~~~l~~~~~A~~~l~~al~l~P~n~----------------~~~~~l~~l~~~~~~~~~~~k~  323 (365)
                      +.++|.++.+++.+|.+|..+|++++|+..|++++.+.|++.                .+...++.+....++..++ ..
T Consensus        64 l~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A-~~  142 (213)
T 1hh8_A           64 INRDKHLAVAYFQRGMLYYQTEKYDLAIKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKA-EE  142 (213)
T ss_dssp             HHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHH-HH
T ss_pred             HHhCccchHHHHHHHHHHHHcccHHHHHHHHHHHHHhCCCccHHHHHHhccccCccchHHHHHHHHHHHHccCHHHH-HH
Confidence            999999999999999999999999999999999999888776                8888888888777776655 44


Q ss_pred             HHhcccCCCCCccc
Q 017811          324 IYKGIFGPRPEPKQ  337 (365)
Q Consensus       324 ~y~kmf~~~~~~~~  337 (365)
                      .|.+.+...|....
T Consensus       143 ~~~~al~~~p~~~~  156 (213)
T 1hh8_A          143 QLALATSMKSEPRH  156 (213)
T ss_dssp             HHHHHHTTCCSGGG
T ss_pred             HHHHHHHcCccccc
Confidence            58888887776543

>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus}

Probab=99.48  E-value=6.5e-13  Score=115.70  Aligned_cols=130  Identities=12%  Similarity=0.047  Sum_probs=98.0

Q ss_pred             hhhhhhhhhhHHHHHHHHHHHHHhhccchhhhhhhhHHHHHHHhhchhhhHHHHHHHHhcCHHHHHHHHHHHHhCCCCCH
Q 017811          188 DGNALFKEEKLEEAMQQYEMAIAYMGDDFMFQLFGKYRDMALAVKNPCHLNMAACLLKLKRYEEAIGQCSLVLGEDENNV  267 (365)
Q Consensus       188 ~G~~~~~~~~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~kl~~~~~A~~~~~~aL~~~p~n~  267 (365)
                      .|..+++.|+|++|+..|++++.+.|.+..                 +++++|.+|..+|++++|+.+|+++++++|+++
T Consensus        60 lg~~~~~~g~~~~A~~~~~~al~~~p~~~~-----------------~~~~lg~~~~~~g~~~~A~~~~~~al~~~P~~~  122 (208)
T 3urz_A           60 LALAYKKNRNYDKAYLFYKELLQKAPNNVD-----------------CLEACAEMQVCRGQEKDALRMYEKILQLEADNL  122 (208)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHHHHHCTTCHH-----------------HHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCH
T ss_pred             HHHHHHHCCCHHHHHHHHHHHHHHCCCCHH-----------------HHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCH
Confidence            999999999999999999999999998744                 499999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHcCC--HHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCCCcc
Q 017811          268 KALFRRGKARAELGQ--TDAAREDFLKAGKFAPEDKSIARELRLLAEHEKAVYKKQKEIYKGIFGPRPEPK  336 (365)
Q Consensus       268 ka~~~~g~a~~~l~~--~~~A~~~l~~al~l~P~n~~~~~~l~~l~~~~~~~~~~~k~~y~kmf~~~~~~~  336 (365)
                      .+++.+|.+|...++  ...+...+++++...|. ..+...++.+....+++. +....|.+.+...|+..
T Consensus       123 ~a~~~lg~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~a~~~~g~~~~~~~~~~-~A~~~~~~al~l~P~~~  191 (208)
T 3urz_A          123 AANIFLGNYYYLTAEQEKKKLETDYKKLSSPTKM-QYARYRDGLSKLFTTRYE-KARNSLQKVILRFPSTE  191 (208)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHC---CCCHH-HHHHHHHHHHHHHHHTHH-HHHHHHHHHTTTSCCHH
T ss_pred             HHHHHHHHHHHHHhHHHHHHHHHHHHHHhCCCch-hHHHHHHHHHHHHccCHH-HHHHHHHHHHHhCCCHH
Confidence            999999999877654  34556666666543332 123334444444444443 35555777777777543

>3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus}

Probab=99.47  E-value=3e-13  Score=121.50  Aligned_cols=140  Identities=14%  Similarity=0.158  Sum_probs=119.0

Q ss_pred             HHHhhhhhhhhhhhhhHHHHHHHHHHHHHhhccchhhhhhhhHHHHHHHhhchhhhHHHHHHHHhcCHHHHHHHHHHHHh
Q 017811          182 ADRRKMDGNALFKEEKLEEAMQQYEMAIAYMGDDFMFQLFGKYRDMALAVKNPCHLNMAACLLKLKRYEEAIGQCSLVLG  261 (365)
Q Consensus       182 a~~~k~~G~~~~~~~~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~kl~~~~~A~~~~~~aL~  261 (365)
                      +..+...|..+++.|+|.+|+..|++++...|.+..              ...+++++|.||+++|+|++|+..|++++.
T Consensus        15 ~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~--------------~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~   80 (261)
T 3qky_A           15 PQEAFERAMEFYNQGKYDRAIEYFKAVFTYGRTHEW--------------AADAQFYLARAYYQNKEYLLAASEYERFIQ   80 (261)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHGGGCSCSTT--------------HHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCcc--------------hHHHHHHHHHHHHHhCcHHHHHHHHHHHHH
Confidence            567889999999999999999999999999987632              134599999999999999999999999999


Q ss_pred             CCCCC---HHHHHHHHHHHHH--------cCCHHHHHHHHHHHHhhCCCcHHHH-----------------HHHHHHHHH
Q 017811          262 EDENN---VKALFRRGKARAE--------LGQTDAAREDFLKAGKFAPEDKSIA-----------------RELRLLAEH  313 (365)
Q Consensus       262 ~~p~n---~ka~~~~g~a~~~--------l~~~~~A~~~l~~al~l~P~n~~~~-----------------~~l~~l~~~  313 (365)
                      ++|++   ..++|.+|.++..        +|++++|+..|++++.++|++..+.                 ..++.+...
T Consensus        81 ~~p~~~~~~~a~~~lg~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~~~~~~~~~~~~~~~la~~~~~  160 (261)
T 3qky_A           81 IYQIDPRVPQAEYERAMCYYKLSPPYELDQTDTRKAIEAFQLFIDRYPNHELVDDATQKIRELRAKLARKQYEAARLYER  160 (261)
T ss_dssp             HCTTCTTHHHHHHHHHHHHHHHCCCTTSCCHHHHHHHHHHHHHHHHCTTCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HCCCCchhHHHHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHCcCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            98854   6799999999999        9999999999999999999986655                 555777666


Q ss_pred             HHHHHHHHHHHHhcccCCCCCcc
Q 017811          314 EKAVYKKQKEIYKGIFGPRPEPK  336 (365)
Q Consensus       314 ~~~~~~~~k~~y~kmf~~~~~~~  336 (365)
                      .+++.++. ..|.+++...|+..
T Consensus       161 ~g~~~~A~-~~~~~~l~~~p~~~  182 (261)
T 3qky_A          161 RELYEAAA-VTYEAVFDAYPDTP  182 (261)
T ss_dssp             TTCHHHHH-HHHHHHHHHCTTST
T ss_pred             ccCHHHHH-HHHHHHHHHCCCCc
Confidence            66666554 45888887777644

>3cgm_A SLYD, peptidyl-prolyl CIS-trans isomerase; chaperone function, two domain P rotamase; 2.41A {Thermus thermophilus} PDB: 3cgn_A 3luo_A*

Probab=99.46  E-value=1e-13  Score=115.28  Aligned_cols=66  Identities=20%  Similarity=0.245  Sum_probs=60.8

Q ss_pred             CCCCCEEEEEEEEEEcCCCeeeccCcCCCCcceeecCCCCchhhhHHHHHhcCCcCcEEEEEeccccccCCCCC
Q 017811           67 PSKYSTCFLHYRAWAESTRHKFDDTWLEQQPLEMVLGKEKKEMTGLAIGVSSMKAGEHALLHVGWELGYGKEGS  140 (365)
Q Consensus        67 p~~g~~v~v~y~~~~~~~g~~fd~s~~~~~p~~f~lg~~~~~i~g~e~~l~~Mk~GE~~~~~i~~~~~yg~~g~  140 (365)
                      +..|+.|+|+|+++ .+ |++||+|+     +.|.+|.+ ++|+||+.+|.+|++||++.|.|||..+||+.+.
T Consensus         3 i~~gd~V~v~Y~g~-~d-G~~fdss~-----~~f~~G~g-~vipG~e~aL~Gm~~Ge~~~v~ipp~~aYG~~~~   68 (158)
T 3cgm_A            3 VGQDKVVTIRYTLQ-VE-GEVLDQGE-----LSYLHGHR-NLIPGLEEALEGREEGEAFQAHVPAEKAYGPHDP   68 (158)
T ss_dssp             CCTTEEEEEEEEEE-ET-TEEEEEEE-----EEEETTSS-SSCHHHHHHHTTCBTTCEEEEEECGGGTTCCCCG
T ss_pred             CCCCCEEEEEEEEE-EC-CEEEEeeE-----EEEEECCC-CcChHHHHHHcCCCCCCEEEEEECcHHHcCCCCc
Confidence            56899999999999 66 99999985     89999999 8999999999999999999999999999998653

>2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A

Probab=99.46  E-value=4.6e-13  Score=118.00  Aligned_cols=140  Identities=13%  Similarity=0.089  Sum_probs=111.7

Q ss_pred             HHHhhhhhhhhhhhhhHHHHHHHHHHHHHhhccchhhhhhhhHHHHHHHhhchhhhHHHHHHHHhcCHHHHHHHHHHHHh
Q 017811          182 ADRRKMDGNALFKEEKLEEAMQQYEMAIAYMGDDFMFQLFGKYRDMALAVKNPCHLNMAACLLKLKRYEEAIGQCSLVLG  261 (365)
Q Consensus       182 a~~~k~~G~~~~~~~~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~kl~~~~~A~~~~~~aL~  261 (365)
                      +..+...|..++..|+|++|+..|++++...|.+...              ..+++++|.||+++|+|++|+..++++++
T Consensus         4 ~~~~~~~a~~~~~~g~~~~A~~~~~~~~~~~p~~~~~--------------~~a~~~lg~~~~~~~~~~~A~~~~~~~l~   69 (225)
T 2yhc_A            4 PNEIYATAQQKLQDGNWRQAITQLEALDNRYPFGPYS--------------QQVQLDLIYAYYKNADLPLAQAAIDRFIR   69 (225)
T ss_dssp             HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTTH--------------HHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHH--------------HHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Confidence            4567788999999999999999999999998875321              23589999999999999999999999999


Q ss_pred             CCCCCHH---HHHHHHHHHHH------------------cCCHHHHHHHHHHHHhhCCCcHHHHHH--------------
Q 017811          262 EDENNVK---ALFRRGKARAE------------------LGQTDAAREDFLKAGKFAPEDKSIARE--------------  306 (365)
Q Consensus       262 ~~p~n~k---a~~~~g~a~~~------------------l~~~~~A~~~l~~al~l~P~n~~~~~~--------------  306 (365)
                      .+|++..   ++|.+|.++..                  +|++++|+..|+++++.+|++..+...              
T Consensus        70 ~~P~~~~~~~a~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~P~~~~a~~a~~~l~~~~~~~~~~  149 (225)
T 2yhc_A           70 LNPTHPNIDYVMYMRGLTNMALDDSALQGFFGVDRSDRDPQQARAAFSDFSKLVRGYPNSQYTTDATKRLVFLKDRLAKY  149 (225)
T ss_dssp             HCTTCTTHHHHHHHHHHHHHHHHC--------------CCHHHHHHHHHHHHHHTTCTTCTTHHHHHHHHHHHHHHHHHH
T ss_pred             HCcCCCcHHHHHHHHHHHHHhhhhhhhhhhhccchhhcCcHHHHHHHHHHHHHHHHCcCChhHHHHHHHHHHHHHHHHHH
Confidence            9999875   89999999987                  578999999999999999998655432              


Q ss_pred             ---HHHHHHHHHHHHHHHHHHHhcccCCCCCcc
Q 017811          307 ---LRLLAEHEKAVYKKQKEIYKGIFGPRPEPK  336 (365)
Q Consensus       307 ---l~~l~~~~~~~~~~~k~~y~kmf~~~~~~~  336 (365)
                         ++.+....+++. .....|.+++...|+..
T Consensus       150 ~~~~a~~~~~~~~~~-~A~~~~~~~l~~~p~~~  181 (225)
T 2yhc_A          150 EYSVAEYYTERGAWV-AVVNRVEGMLRDYPDTQ  181 (225)
T ss_dssp             HHHHHHHHHHHTCHH-HHHHHHHHHHHHSTTSH
T ss_pred             HHHHHHHHHHcCcHH-HHHHHHHHHHHHCcCCC
Confidence               223333333333 34455888887777654

>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis}

Probab=99.45  E-value=6e-13  Score=102.12  Aligned_cols=102  Identities=20%  Similarity=0.223  Sum_probs=95.2

Q ss_pred             HHHhhhhhhhhhhhhhHHHHHHHHHHHHHhhccchhhhhhhhHHHHHHHhhchhhhHHHHHHHHhcCHHHHHHHHHHHHh
Q 017811          182 ADRRKMDGNALFKEEKLEEAMQQYEMAIAYMGDDFMFQLFGKYRDMALAVKNPCHLNMAACLLKLKRYEEAIGQCSLVLG  261 (365)
Q Consensus       182 a~~~k~~G~~~~~~~~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~kl~~~~~A~~~~~~aL~  261 (365)
                      +..+...|..++..|+|.+|+..|.+++...|.+..                 +++++|.++..+|+|++|+..++++++
T Consensus         6 ~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~-----------------~~~~~a~~~~~~~~~~~A~~~~~~a~~   68 (112)
T 2kck_A            6 PEEYYLEGVLQYDAGNYTESIDLFEKAIQLDPEESK-----------------YWLMKGKALYNLERYEEAVDCYNYVIN   68 (112)
T ss_dssp             TTGGGGHHHHHHSSCCHHHHHHHHHHHHHHCCCCHH-----------------HHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCcCCHH-----------------HHHHHHHHHHHccCHHHHHHHHHHHHH
Confidence            345678999999999999999999999999987633                 489999999999999999999999999


Q ss_pred             CCCC--CHHHHHHHHHHHHHc-CCHHHHHHHHHHHHhhCCCc
Q 017811          262 EDEN--NVKALFRRGKARAEL-GQTDAAREDFLKAGKFAPED  300 (365)
Q Consensus       262 ~~p~--n~ka~~~~g~a~~~l-~~~~~A~~~l~~al~l~P~n  300 (365)
                      ++|.  +..+++.+|.++..+ |++++|+..|++++...|.+
T Consensus        69 ~~~~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~~~~~~p~~  110 (112)
T 2kck_A           69 VIEDEYNKDVWAAKADALRYIEGKEVEAEIAEARAKLEHHHH  110 (112)
T ss_dssp             TSCCTTCHHHHHHHHHHHTTCSSCSHHHHHHHHHHGGGCCCC
T ss_pred             hCcccchHHHHHHHHHHHHHHhCCHHHHHHHHHHHhhcccCC
Confidence            9999  999999999999999 99999999999999999975

>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A*

Probab=99.45  E-value=1.2e-13  Score=114.06  Aligned_cols=121  Identities=11%  Similarity=0.011  Sum_probs=104.8

Q ss_pred             HHHHHHHHhhccchhhhhhhhHHHHHHHhhchhhhHHHHHHHHhcCHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHcCC
Q 017811          203 QQYEMAIAYMGDDFMFQLFGKYRDMALAVKNPCHLNMAACLLKLKRYEEAIGQCSLVLGEDENNVKALFRRGKARAELGQ  282 (365)
Q Consensus       203 ~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~kl~~~~~A~~~~~~aL~~~p~n~ka~~~~g~a~~~l~~  282 (365)
                      ..|++++.+.|.+..                 +++++|.+++..|+|++|+..+++++.++|.++.+|+.+|.++..+|+
T Consensus         8 ~~~~~al~~~p~~~~-----------------~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~   70 (148)
T 2vgx_A            8 GTIAMLNEISSDTLE-----------------QLYSLAFNQYQSGXYEDAHXVFQALCVLDHYDSRFFLGLGACRQAMGQ   70 (148)
T ss_dssp             CSHHHHTTCCHHHHH-----------------HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTC
T ss_pred             hhHHHHHcCCHhhHH-----------------HHHHHHHHHHHcCChHHHHHHHHHHHHcCcccHHHHHHHHHHHHHHhh
Confidence            457788888776533                 489999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCCCccccchh
Q 017811          283 TDAAREDFLKAGKFAPEDKSIARELRLLAEHEKAVYKKQKEIYKGIFGPRPEPKQKKNW  341 (365)
Q Consensus       283 ~~~A~~~l~~al~l~P~n~~~~~~l~~l~~~~~~~~~~~k~~y~kmf~~~~~~~~~~~~  341 (365)
                      |++|+..|++++.++|++..+...++.+....++..++. ..|.+.+...|+......+
T Consensus        71 ~~~A~~~~~~al~l~p~~~~~~~~lg~~~~~~g~~~~A~-~~~~~al~~~p~~~~~~~~  128 (148)
T 2vgx_A           71 YDLAIHSYSYGAVMDIXEPRFPFHAAECLLQXGELAEAE-SGLFLAQELIANXPEFXEL  128 (148)
T ss_dssp             HHHHHHHHHHHHHHSTTCTHHHHHHHHHHHHTTCHHHHH-HHHHHHHHHHTTCGGGHHH
T ss_pred             HHHHHHHHHHHHhcCCCCchHHHHHHHHHHHcCCHHHHH-HHHHHHHHHCcCCCcchHH
Confidence            999999999999999999999999999988888877665 4588888777765544333

>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli}

Probab=99.44  E-value=1.9e-12  Score=109.07  Aligned_cols=112  Identities=12%  Similarity=0.120  Sum_probs=85.9

Q ss_pred             HHHhhhhhhhhhhhhhHHHHHHHHHHHHHhhccchhhhhhhhHHHHHHHhhchhhhHHHHH-HHHhcCH--HHHHHHHHH
Q 017811          182 ADRRKMDGNALFKEEKLEEAMQQYEMAIAYMGDDFMFQLFGKYRDMALAVKNPCHLNMAAC-LLKLKRY--EEAIGQCSL  258 (365)
Q Consensus       182 a~~~k~~G~~~~~~~~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~-~~kl~~~--~~A~~~~~~  258 (365)
                      +..+...|..++..|+|.+|+..|.+++.+.|.+..                 +++++|.+ +...|++  ++|+..+.+
T Consensus        44 ~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~-----------------~~~~la~~l~~~~~~~~~~~A~~~~~~  106 (177)
T 2e2e_A           44 SEQWALLGEYYLWQNDYSNSLLAYRQALQLRGENAE-----------------LYAALATVLYYQASQHMTAQTRAMIDK  106 (177)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHCSCHH-----------------HHHHHHHHHHHHTTTCCCHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHH-----------------HHHHHHHHHHHhcCCcchHHHHHHHHH
Confidence            345677788888888888888888888888776533                 37788888 7778887  888888888


Q ss_pred             HHhCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCcHHHHHHHHHH
Q 017811          259 VLGEDENNVKALFRRGKARAELGQTDAAREDFLKAGKFAPEDKSIARELRLL  310 (365)
Q Consensus       259 aL~~~p~n~ka~~~~g~a~~~l~~~~~A~~~l~~al~l~P~n~~~~~~l~~l  310 (365)
                      ++.++|++..+++.+|.++..+|++++|+..|++++.++|++......+..+
T Consensus       107 al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~i  158 (177)
T 2e2e_A          107 ALALDSNEITALMLLASDAFMQANYAQAIELWQKVMDLNSPRINRTQLVESI  158 (177)
T ss_dssp             HHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCTTSCHHHHHHHH
T ss_pred             HHHhCCCcHHHHHHHHHHHHHcccHHHHHHHHHHHHhhCCCCccHHHHHHHH
Confidence            8888888888888888888888888888888888888888775544444433

>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}

Probab=99.43  E-value=3.1e-13  Score=138.81  Aligned_cols=136  Identities=13%  Similarity=0.012  Sum_probs=121.4

Q ss_pred             HhhhhhhhhhhhhhHHHHHHHHHHHHHhhccchhhhhhhhHHHHHHHhhchhhhHHHHHHHHhcCHHHHHHHHHHHHhCC
Q 017811          184 RRKMDGNALFKEEKLEEAMQQYEMAIAYMGDDFMFQLFGKYRDMALAVKNPCHLNMAACLLKLKRYEEAIGQCSLVLGED  263 (365)
Q Consensus       184 ~~k~~G~~~~~~~~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~kl~~~~~A~~~~~~aL~~~  263 (365)
                      .+...|..++..|+|++|+..|+++++..|.+..                 +++++|.+|+.+|+|++|+.+|+++++++
T Consensus       435 ~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~-----------------a~~~lg~~~~~~g~~~~A~~~~~~al~l~  497 (681)
T 2pzi_A          435 LPLMEVRALLDLGDVAKATRKLDDLAERVGWRWR-----------------LVWYRAVAELLTGDYDSATKHFTEVLDTF  497 (681)
T ss_dssp             HHHHHHHHHHHHTCHHHHHHHHHHHHHHHCCCHH-----------------HHHHHHHHHHHHTCHHHHHHHHHHHHHHS
T ss_pred             HHHHHHHHHHhcCCHHHHHHHHHHHhccCcchHH-----------------HHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Confidence            4667889999999999999999999999998754                 49999999999999999999999999999


Q ss_pred             CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCCCcccc
Q 017811          264 ENNVKALFRRGKARAELGQTDAAREDFLKAGKFAPEDKSIARELRLLAEHEKAVYKKQKEIYKGIFGPRPEPKQK  338 (365)
Q Consensus       264 p~n~ka~~~~g~a~~~l~~~~~A~~~l~~al~l~P~n~~~~~~l~~l~~~~~~~~~~~k~~y~kmf~~~~~~~~~  338 (365)
                      |++..+++.+|.++..+|+|++ +..|+++++++|++..+...++.+...++++.++. ..|.+.+...|.....
T Consensus       498 P~~~~~~~~lg~~~~~~g~~~~-~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~A~-~~~~~al~l~P~~~~a  570 (681)
T 2pzi_A          498 PGELAPKLALAATAELAGNTDE-HKFYQTVWSTNDGVISAAFGLARARSAEGDRVGAV-RTLDEVPPTSRHFTTA  570 (681)
T ss_dssp             TTCSHHHHHHHHHHHHHTCCCT-TCHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHH-HHHHTSCTTSTTHHHH
T ss_pred             CCChHHHHHHHHHHHHcCChHH-HHHHHHHHHhCCchHHHHHHHHHHHHHcCCHHHHH-HHHHhhcccCcccHHH
Confidence            9999999999999999999999 99999999999999999999999988888776555 4599999888765443

>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A

Probab=99.43  E-value=1.6e-12  Score=102.50  Aligned_cols=131  Identities=22%  Similarity=0.226  Sum_probs=113.2

Q ss_pred             HhhhhhhhhhhhhhHHHHHHHHHHHHHhhccchhhhhhhhHHHHHHHhhchhhhHHHHHHHHhcCHHHHHHHHHHHHhCC
Q 017811          184 RRKMDGNALFKEEKLEEAMQQYEMAIAYMGDDFMFQLFGKYRDMALAVKNPCHLNMAACLLKLKRYEEAIGQCSLVLGED  263 (365)
Q Consensus       184 ~~k~~G~~~~~~~~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~kl~~~~~A~~~~~~aL~~~  263 (365)
                      .+...|..++..|++++|+..|.+++...|.+..                 ++.++|.++...|++++|+..+.+++..+
T Consensus         3 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~-----------------~~~~~a~~~~~~~~~~~A~~~~~~~~~~~   65 (136)
T 2fo7_A            3 AWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAE-----------------AWYNLGNAYYKQGDYDEAIEYYQKALELD   65 (136)
T ss_dssp             HHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHH-----------------HHHHHHHHHHHHTCHHHHHHHHHHHHHHC
T ss_pred             HHHHHHHHHHHcCcHHHHHHHHHHHHHcCCcchh-----------------HHHHHHHHHHHhcCHHHHHHHHHHHHHHC
Confidence            4667899999999999999999999998876532                 48899999999999999999999999999


Q ss_pred             CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCC
Q 017811          264 ENNVKALFRRGKARAELGQTDAAREDFLKAGKFAPEDKSIARELRLLAEHEKAVYKKQKEIYKGIFGPR  332 (365)
Q Consensus       264 p~n~ka~~~~g~a~~~l~~~~~A~~~l~~al~l~P~n~~~~~~l~~l~~~~~~~~~~~k~~y~kmf~~~  332 (365)
                      |.+..+++.+|.++...|++++|+..|++++.+.|.+..+...+..+....++..+. ...|.+++...
T Consensus        66 ~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A-~~~~~~~~~~~  133 (136)
T 2fo7_A           66 PRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEA-IEYYQKALELD  133 (136)
T ss_dssp             TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHH-HHHHHHHHHHS
T ss_pred             CCchHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHccHHHH-HHHHHHHHccC
Confidence            999999999999999999999999999999999999998888888887666655544 34466655433

>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli}

Probab=99.43  E-value=5.7e-13  Score=112.30  Aligned_cols=137  Identities=11%  Similarity=0.025  Sum_probs=117.0

Q ss_pred             HhhhhhhhhhhhhhHHHHHHHHHHHHHhhccchhhhhhhhHHHHHHHhhchhhhHHHHHHHHhcCHHHHHHHHHHHHhCC
Q 017811          184 RRKMDGNALFKEEKLEEAMQQYEMAIAYMGDDFMFQLFGKYRDMALAVKNPCHLNMAACLLKLKRYEEAIGQCSLVLGED  263 (365)
Q Consensus       184 ~~k~~G~~~~~~~~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~kl~~~~~A~~~~~~aL~~~  263 (365)
                      .+...++.++..|+|++|+..|.+++...|.+..                 +++++|.+|..+|+|++|+.++.+++.++
T Consensus        12 ~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~-----------------~~~~lg~~~~~~~~~~~A~~~~~~al~~~   74 (177)
T 2e2e_A           12 RQRDPLHQFASQQNPEAQLQALQDKIRANPQNSE-----------------QWALLGEYYLWQNDYSNSLLAYRQALQLR   74 (177)
T ss_dssp             CSSTTTCCCC-----CCCCHHHHHHHHHCCSCHH-----------------HHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred             HHhhhhhhhhhccCHHHHHHHHHHHHHhCCCcHH-----------------HHHHHHHHHHHcCCHHHHHHHHHHHHHcC
Confidence            4456677789999999999999999999998643                 48999999999999999999999999999


Q ss_pred             CCCHHHHHHHHHH-HHHcCCH--HHHHHHHHHHHhhCCCcHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCCCcccc
Q 017811          264 ENNVKALFRRGKA-RAELGQT--DAAREDFLKAGKFAPEDKSIARELRLLAEHEKAVYKKQKEIYKGIFGPRPEPKQK  338 (365)
Q Consensus       264 p~n~ka~~~~g~a-~~~l~~~--~~A~~~l~~al~l~P~n~~~~~~l~~l~~~~~~~~~~~k~~y~kmf~~~~~~~~~  338 (365)
                      |.++.+++.+|.+ +...|++  ++|+..|++++.++|++..+...++.+....+++.++. ..|.+++...|.....
T Consensus        75 p~~~~~~~~la~~l~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~-~~~~~al~~~p~~~~~  151 (177)
T 2e2e_A           75 GENAELYAALATVLYYQASQHMTAQTRAMIDKALALDSNEITALMLLASDAFMQANYAQAI-ELWQKVMDLNSPRINR  151 (177)
T ss_dssp             CSCHHHHHHHHHHHHHHTTTCCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHH-HHHHHHHHTCCTTSCH
T ss_pred             CCCHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcccHHHHH-HHHHHHHhhCCCCccH
Confidence            9999999999999 8899999  99999999999999999999999999988887776554 5588888888876543

>3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus}

Probab=99.42  E-value=3.1e-12  Score=114.75  Aligned_cols=142  Identities=15%  Similarity=0.128  Sum_probs=119.5

Q ss_pred             HHHhhhhhhhhhhhhhHHHHHHHHHHHHHhhccchhhhhhhhHHHHHHHhhchhhhHHHHHHHH--------hcCHHHHH
Q 017811          182 ADRRKMDGNALFKEEKLEEAMQQYEMAIAYMGDDFMFQLFGKYRDMALAVKNPCHLNMAACLLK--------LKRYEEAI  253 (365)
Q Consensus       182 a~~~k~~G~~~~~~~~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~k--------l~~~~~A~  253 (365)
                      ...+...|..++..|+|.+|+..|++++...|.+...              ..+++++|.|++.        +|++++|+
T Consensus        52 ~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~p~~~~~--------------~~a~~~lg~~~~~~~~~~~~~~~~~~~A~  117 (261)
T 3qky_A           52 ADAQFYLARAYYQNKEYLLAASEYERFIQIYQIDPRV--------------PQAEYERAMCYYKLSPPYELDQTDTRKAI  117 (261)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTH--------------HHHHHHHHHHHHHHCCCTTSCCHHHHHHH
T ss_pred             HHHHHHHHHHHHHhCcHHHHHHHHHHHHHHCCCCchh--------------HHHHHHHHHHHHHhcccccccchhHHHHH
Confidence            4567889999999999999999999999999875332              3459999999999        99999999


Q ss_pred             HHHHHHHhCCCCCHHHH-----------------HHHHHHHHHcCCHHHHHHHHHHHHhhCCC---cHHHHHHHHHHHHH
Q 017811          254 GQCSLVLGEDENNVKAL-----------------FRRGKARAELGQTDAAREDFLKAGKFAPE---DKSIARELRLLAEH  313 (365)
Q Consensus       254 ~~~~~aL~~~p~n~ka~-----------------~~~g~a~~~l~~~~~A~~~l~~al~l~P~---n~~~~~~l~~l~~~  313 (365)
                      ..+++++..+|++..+.                 +.+|.+|..+|+|++|+..|++++...|+   ...+...++.+...
T Consensus       118 ~~~~~~l~~~p~~~~~~~a~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~  197 (261)
T 3qky_A          118 EAFQLFIDRYPNHELVDDATQKIRELRAKLARKQYEAARLYERRELYEAAAVTYEAVFDAYPDTPWADDALVGAMRAYIA  197 (261)
T ss_dssp             HHHHHHHHHCTTCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHCcCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHH
Confidence            99999999999986655                 99999999999999999999999999998   45677778877765


Q ss_pred             HH---------HHHHHHHHHHhcccCCCCCccc
Q 017811          314 EK---------AVYKKQKEIYKGIFGPRPEPKQ  337 (365)
Q Consensus       314 ~~---------~~~~~~k~~y~kmf~~~~~~~~  337 (365)
                      ++         ...++....|.+++...|+...
T Consensus       198 ~g~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~  230 (261)
T 3qky_A          198 YAEQSVRARQPERYRRAVELYERLLQIFPDSPL  230 (261)
T ss_dssp             HHHTSCGGGHHHHHHHHHHHHHHHHHHCTTCTH
T ss_pred             hcccchhhcccchHHHHHHHHHHHHHHCCCChH
Confidence            51         3334556668988887776543

>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii}

Probab=99.42  E-value=1.8e-12  Score=116.17  Aligned_cols=150  Identities=17%  Similarity=0.096  Sum_probs=78.7

Q ss_pred             HhhhhhhhhhhhhhHHHHHHHHHHHHHhhccchhhhh--------hhhHHHH---HH---------HhhchhhhHHHHHH
Q 017811          184 RRKMDGNALFKEEKLEEAMQQYEMAIAYMGDDFMFQL--------FGKYRDM---AL---------AVKNPCHLNMAACL  243 (365)
Q Consensus       184 ~~k~~G~~~~~~~~y~~A~~~y~~al~~~~~~~~~~~--------~~~~~~~---~~---------~~~~~~~~nla~~~  243 (365)
                      .+...|..++..|+|++|+..|++++...|.+...-.        .+...+.   ..         .....++.++|.+|
T Consensus         5 ~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~lg~~~   84 (272)
T 3u4t_A            5 VEFRYADFLFKNNNYAEAIEVFNKLEAKKYNSPYIYNRRAVCYYELAKYDLAQKDIETYFSKVNATKAKSADFEYYGKIL   84 (272)
T ss_dssp             CHHHHHHHHHTTTCHHHHHHHHHHHHHTTCCCSTTHHHHHHHHHHTTCHHHHHHHHHHHHTTSCTTTCCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhccCchhHHHHHHHHHHHHH
Confidence            4556677777777777777777777777766432100        0000000   00         00112245556666


Q ss_pred             HHhcCHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCcHHHHHHHH-HHHHHHHHHHHHHH
Q 017811          244 LKLKRYEEAIGQCSLVLGEDENNVKALFRRGKARAELGQTDAAREDFLKAGKFAPEDKSIARELR-LLAEHEKAVYKKQK  322 (365)
Q Consensus       244 ~kl~~~~~A~~~~~~aL~~~p~n~ka~~~~g~a~~~l~~~~~A~~~l~~al~l~P~n~~~~~~l~-~l~~~~~~~~~~~k  322 (365)
                      ..+|++++|+.++.++++++|.++.+++.+|.++..+|++++|+..|++++.++|.+..+...++ .+....  ..++..
T Consensus        85 ~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~~--~~~~A~  162 (272)
T 3u4t_A           85 MKKGQDSLAIQQYQAAVDRDTTRLDMYGQIGSYFYNKGNFPLAIQYMEKQIRPTTTDPKVFYELGQAYYYNK--EYVKAD  162 (272)
T ss_dssp             HHTTCHHHHHHHHHHHHHHSTTCTHHHHHHHHHHHHTTCHHHHHHHHGGGCCSSCCCHHHHHHHHHHHHHTT--CHHHHH
T ss_pred             HHcccHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHccCHHHHHHHHHHHhhcCCCcHHHHHHHHHHHHHHH--HHHHHH
Confidence            66666666666666666666655556666666666666666666666666665555555555555 333222  222333


Q ss_pred             HHHhcccCCCCCc
Q 017811          323 EIYKGIFGPRPEP  335 (365)
Q Consensus       323 ~~y~kmf~~~~~~  335 (365)
                      ..|.+++...|..
T Consensus       163 ~~~~~a~~~~p~~  175 (272)
T 3u4t_A          163 SSFVKVLELKPNI  175 (272)
T ss_dssp             HHHHHHHHHSTTC
T ss_pred             HHHHHHHHhCccc
Confidence            4455555444433

>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus}

Probab=99.42  E-value=3.5e-12  Score=118.04  Aligned_cols=122  Identities=22%  Similarity=0.244  Sum_probs=109.9

Q ss_pred             HHhhhhhhhhhhhhhHHHHHHHHHHHHHhhccchhhhhhhhHHHHHHHhhchhhhHHHHHHHHhcCHHHHHHHHHHHHhC
Q 017811          183 DRRKMDGNALFKEEKLEEAMQQYEMAIAYMGDDFMFQLFGKYRDMALAVKNPCHLNMAACLLKLKRYEEAIGQCSLVLGE  262 (365)
Q Consensus       183 ~~~k~~G~~~~~~~~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~kl~~~~~A~~~~~~aL~~  262 (365)
                      ......|..++..|++.+|+..|.+++...|.+...             ...++.++|.++.++|++++|+..+++++++
T Consensus       235 ~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~-------------~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~  301 (359)
T 3ieg_A          235 NKLIESAEELIRDGRYTDATSKYESVMKTEPSVAEY-------------TVRSKERICHCFSKDEKPVEAIRICSEVLQM  301 (359)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCSSHHH-------------HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCchHH-------------HHHHHHHHHHHHHHccCHHHHHHHHHHHHHh
Confidence            344566999999999999999999999999886332             3345889999999999999999999999999


Q ss_pred             CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHHHHH
Q 017811          263 DENNVKALFRRGKARAELGQTDAAREDFLKAGKFAPEDKSIARELRLLAEHEKAV  317 (365)
Q Consensus       263 ~p~n~ka~~~~g~a~~~l~~~~~A~~~l~~al~l~P~n~~~~~~l~~l~~~~~~~  317 (365)
                      +|+++.+++.+|.++..+|++++|+..|+++++++|++..+...+..+...+++.
T Consensus       302 ~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~~~~  356 (359)
T 3ieg_A          302 EPDNVNALKDRAEAYLIEEMYDEAIQDYEAAQEHNENDQQIREGLEKAQRLLKQS  356 (359)
T ss_dssp             CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHHHHH
T ss_pred             CcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHh
Confidence            9999999999999999999999999999999999999999999999887776654

>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus}

Probab=99.41  E-value=1.1e-12  Score=128.96  Aligned_cols=153  Identities=16%  Similarity=0.107  Sum_probs=76.3

Q ss_pred             HHHhhhhhhhhhhhhhH-HHHHHHHHHHHHhhccchhhhh--------hhhHHHHHHHh--------hchhhhHHHHHHH
Q 017811          182 ADRRKMDGNALFKEEKL-EEAMQQYEMAIAYMGDDFMFQL--------FGKYRDMALAV--------KNPCHLNMAACLL  244 (365)
Q Consensus       182 a~~~k~~G~~~~~~~~y-~~A~~~y~~al~~~~~~~~~~~--------~~~~~~~~~~~--------~~~~~~nla~~~~  244 (365)
                      +..+...|..++..|+| ++|+..|++|+++.|.+...-.        .+...+....+        ...++.++|.+|.
T Consensus       102 a~~~~~lg~~~~~~g~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~lg~~~~  181 (474)
T 4abn_A          102 AQALMLKGKALNVTPDYSPEAEVLLSKAVKLEPELVEAWNQLGEVYWKKGDVTSAHTCFSGALTHCKNKVSLQNLSMVLR  181 (474)
T ss_dssp             HHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTCCCHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHHhccccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCHHHHHHHHHHHH
Confidence            34556677777777777 7777777777777766432100        00000000000        0123455555555


Q ss_pred             Hh---------cCHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHc--------CCHHHHHHHHHHHHhhCC---CcHHHH
Q 017811          245 KL---------KRYEEAIGQCSLVLGEDENNVKALFRRGKARAEL--------GQTDAAREDFLKAGKFAP---EDKSIA  304 (365)
Q Consensus       245 kl---------~~~~~A~~~~~~aL~~~p~n~ka~~~~g~a~~~l--------~~~~~A~~~l~~al~l~P---~n~~~~  304 (365)
                      .+         |+|++|+..++++++++|++..+|+.+|.+|..+        |++++|+..|++++.++|   ++..+.
T Consensus       182 ~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~  261 (474)
T 4abn_A          182 QLQTDSGDEHSRHVMDSVRQAKLAVQMDVLDGRSWYILGNAYLSLYFNTGQNPKISQQALSAYAQAEKVDRKASSNPDLH  261 (474)
T ss_dssp             TCCCSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHCGGGGGCHHHH
T ss_pred             HhccCChhhhhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHhhccccchHHHHHHHHHHHHHhCCCcccCHHHH
Confidence            55         5555555555555555555555555555555555        555555555555555555   555555


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHhcccCCCCCc
Q 017811          305 RELRLLAEHEKAVYKKQKEIYKGIFGPRPEP  335 (365)
Q Consensus       305 ~~l~~l~~~~~~~~~~~k~~y~kmf~~~~~~  335 (365)
                      ..++.+....+++.++. ..|.+.+...|+.
T Consensus       262 ~~lg~~~~~~g~~~~A~-~~~~~al~l~p~~  291 (474)
T 4abn_A          262 LNRATLHKYEESYGEAL-EGFSQAAALDPAW  291 (474)
T ss_dssp             HHHHHHHHHTTCHHHHH-HHHHHHHHHCTTC
T ss_pred             HHHHHHHHHcCCHHHHH-HHHHHHHHhCCCC
Confidence            55555544444443332 2255554444443

>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A*

Probab=99.41  E-value=1.2e-12  Score=131.25  Aligned_cols=137  Identities=13%  Similarity=0.048  Sum_probs=122.3

Q ss_pred             HHHHhhhhhhhhhhhhhHHHHHHHHHHHHHhhccchhhhhhhhHHHHHHHhhchhhhHHHHHHHHhcCHHHHHHHHHHHH
Q 017811          181 AADRRKMDGNALFKEEKLEEAMQQYEMAIAYMGDDFMFQLFGKYRDMALAVKNPCHLNMAACLLKLKRYEEAIGQCSLVL  260 (365)
Q Consensus       181 ~a~~~k~~G~~~~~~~~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~kl~~~~~A~~~~~~aL  260 (365)
                      .+..+...|..++..|+|++|+..|++|+++.|.+..                 +++++|.+|..+|++++|+.++++++
T Consensus        22 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~-----------------~~~~lg~~~~~~g~~~~A~~~~~~al   84 (568)
T 2vsy_A           22 DFVAWLMLADAELGMGDTTAGEMAVQRGLALHPGHPE-----------------AVARLGRVRWTQQRHAEAAVLLQQAS   84 (568)
T ss_dssp             CHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTSTTCHH-----------------HHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHH-----------------HHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence            4567889999999999999999999999999988643                 49999999999999999999999999


Q ss_pred             hCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHH---HHHHHHHHHHHhcccCCCCCc
Q 017811          261 GEDENNVKALFRRGKARAELGQTDAAREDFLKAGKFAPEDKSIARELRLLAEHE---KAVYKKQKEIYKGIFGPRPEP  335 (365)
Q Consensus       261 ~~~p~n~ka~~~~g~a~~~l~~~~~A~~~l~~al~l~P~n~~~~~~l~~l~~~~---~~~~~~~k~~y~kmf~~~~~~  335 (365)
                      +++|++..+++.+|.+|..+|++++|+..|+++++++|++..+...+..+....   ++..+. ...|.+.+...|..
T Consensus        85 ~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~g~~~~A-~~~~~~al~~~p~~  161 (568)
T 2vsy_A           85 DAAPEHPGIALWLGHALEDAGQAEAAAAAYTRAHQLLPEEPYITAQLLNWRRRLCDWRALDVL-SAQVRAAVAQGVGA  161 (568)
T ss_dssp             HHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCTTHHHH-HHHHHHHHHHTCCC
T ss_pred             hcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhccccHHHH-HHHHHHHHhcCCcc
Confidence            999999999999999999999999999999999999999999999999998877   665544 44577777666653

>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus}

Probab=99.40  E-value=6.7e-13  Score=130.49  Aligned_cols=146  Identities=13%  Similarity=0.095  Sum_probs=119.7

Q ss_pred             HHHhhhhhhhhhhhhhHHHHHHHHHHHHHhhccchhh-------hhh---------hhHHHHHHHh---------hchhh
Q 017811          182 ADRRKMDGNALFKEEKLEEAMQQYEMAIAYMGDDFMF-------QLF---------GKYRDMALAV---------KNPCH  236 (365)
Q Consensus       182 a~~~k~~G~~~~~~~~y~~A~~~y~~al~~~~~~~~~-------~~~---------~~~~~~~~~~---------~~~~~  236 (365)
                      +..+...|..++..|+|++|+..|++|+.+.|.....       ...         +...+....+         ...++
T Consensus       137 ~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~lg~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~  216 (474)
T 4abn_A          137 VEAWNQLGEVYWKKGDVTSAHTCFSGALTHCKNKVSLQNLSMVLRQLQTDSGDEHSRHVMDSVRQAKLAVQMDVLDGRSW  216 (474)
T ss_dssp             HHHHHHHHHHHHHHTCHHHHHHHHHHHHTTCCCHHHHHHHHHHHTTCCCSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHH
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHhccCChhhhhhhHHHHHHHHHHHHHhCCCCHHHH
Confidence            4567889999999999999999999999999862110       001         1111111111         13578


Q ss_pred             hHHHHHHHHh--------cCHHHHHHHHHHHHhCCC---CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCcHHHHH
Q 017811          237 LNMAACLLKL--------KRYEEAIGQCSLVLGEDE---NNVKALFRRGKARAELGQTDAAREDFLKAGKFAPEDKSIAR  305 (365)
Q Consensus       237 ~nla~~~~kl--------~~~~~A~~~~~~aL~~~p---~n~ka~~~~g~a~~~l~~~~~A~~~l~~al~l~P~n~~~~~  305 (365)
                      +++|.+|..+        |+|++|+.+|+++++++|   .++.+|+.+|.+|..+|+|++|+..|+++++++|++..++.
T Consensus       217 ~~lg~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~a~~  296 (474)
T 4abn_A          217 YILGNAYLSLYFNTGQNPKISQQALSAYAQAEKVDRKASSNPDLHLNRATLHKYEESYGEALEGFSQAAALDPAWPEPQQ  296 (474)
T ss_dssp             HHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHCGGGGGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHH
T ss_pred             HHHHHHHHHHHHhhccccchHHHHHHHHHHHHHhCCCcccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHH
Confidence            9999999999        999999999999999999   99999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHhcc
Q 017811          306 ELRLLAEHEKAVYKKQKEIYKGI  328 (365)
Q Consensus       306 ~l~~l~~~~~~~~~~~k~~y~km  328 (365)
                      .+..+...+++..+.... |.++
T Consensus       297 ~l~~~~~~lg~~~eAi~~-~~~~  318 (474)
T 4abn_A          297 REQQLLEFLSRLTSLLES-KGKT  318 (474)
T ss_dssp             HHHHHHHHHHHHHHHHHH-TTTC
T ss_pred             HHHHHHHHHHHHHHHHHH-hccc
Confidence            999998888877666543 4433

>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1

Probab=99.40  E-value=4.5e-12  Score=113.41  Aligned_cols=134  Identities=22%  Similarity=0.107  Sum_probs=112.4

Q ss_pred             HHHHHhhhhhhhhhhhhhHHHHHHHHHHHHHhhccchhhhhhhhHHHHHHHhhchhhhHHHHHHHHhcCHHHHHHHHHHH
Q 017811          180 GAADRRKMDGNALFKEEKLEEAMQQYEMAIAYMGDDFMFQLFGKYRDMALAVKNPCHLNMAACLLKLKRYEEAIGQCSLV  259 (365)
Q Consensus       180 ~~a~~~k~~G~~~~~~~~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~kl~~~~~A~~~~~~a  259 (365)
                      ..+..+...|..++..|+|.+|+..|.+++...|.+..                 ++.++|.+|..+|+|++|+.++.++
T Consensus        41 ~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~-----------------~~~~la~~~~~~~~~~~A~~~~~~a  103 (275)
T 1xnf_A           41 ERAQLLYERGVLYDSLGLRALARNDFSQALAIRPDMPE-----------------VFNYLGIYLTQAGNFDAAYEAFDSV  103 (275)
T ss_dssp             HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCCHH-----------------HHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred             hhHHHHHHHHHHHHHcccHHHHHHHHHHHHHcCCCcHH-----------------HHHHHHHHHHHccCHHHHHHHHHHH
Confidence            45677889999999999999999999999999988643                 4899999999999999999999999


Q ss_pred             HhCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCC
Q 017811          260 LGEDENNVKALFRRGKARAELGQTDAAREDFLKAGKFAPEDKSIARELRLLAEHEKAVYKKQKEIYKGIFGPR  332 (365)
Q Consensus       260 L~~~p~n~ka~~~~g~a~~~l~~~~~A~~~l~~al~l~P~n~~~~~~l~~l~~~~~~~~~~~k~~y~kmf~~~  332 (365)
                      +.++|.+..+++.+|.++..+|++++|+..|++++.++|++......+..+ ...++. ......|.+.+...
T Consensus       104 l~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~-~~~~~~-~~A~~~~~~~~~~~  174 (275)
T 1xnf_A          104 LELDPTYNYAHLNRGIALYYGGRDKLAQDDLLAFYQDDPNDPFRSLWLYLA-EQKLDE-KQAKEVLKQHFEKS  174 (275)
T ss_dssp             HHHCTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH-HHHHCH-HHHHHHHHHHHHHS
T ss_pred             HhcCccccHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCChHHHHHHHHH-HHhcCH-HHHHHHHHHHHhcC
Confidence            999999999999999999999999999999999999999998666555544 333333 33344455544433

>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae}

Probab=99.40  E-value=3e-12  Score=113.10  Aligned_cols=133  Identities=12%  Similarity=-0.019  Sum_probs=71.5

Q ss_pred             HHHHHhhhhhhhhhhhhhHHHHHHHHHHHHHhhccchhhhhhhhHHHHHHHhhchhhhHHHHHHHHhcCHHHHHHHHHHH
Q 017811          180 GAADRRKMDGNALFKEEKLEEAMQQYEMAIAYMGDDFMFQLFGKYRDMALAVKNPCHLNMAACLLKLKRYEEAIGQCSLV  259 (365)
Q Consensus       180 ~~a~~~k~~G~~~~~~~~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~kl~~~~~A~~~~~~a  259 (365)
                      +.+......+..+.+.|++.+|+..|.+++...|.+.                 .++.++|.++...|+|++|+..++++
T Consensus       103 ~~a~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~-----------------~~~~~~~~~~~~~~~~~~A~~~~~~a  165 (258)
T 3uq3_A          103 QKSLTEHRTADILTKLRNAEKELKKAEAEAYVNPEKA-----------------EEARLEGKEYFTKSDWPNAVKAYTEM  165 (258)
T ss_dssp             HHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHCCHHHH-----------------HHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred             HHHHhcCchhHHHHHHhHHHHHHHHHHHHHHcCcchH-----------------HHHHHHHHHHHHhcCHHHHHHHHHHH
Confidence            3333344445555555556666666665555554421                 13555555555555555565555555


Q ss_pred             HhCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHHHHHHHHHHHHHhcccC
Q 017811          260 LGEDENNVKALFRRGKARAELGQTDAAREDFLKAGKFAPEDKSIARELRLLAEHEKAVYKKQKEIYKGIFG  330 (365)
Q Consensus       260 L~~~p~n~ka~~~~g~a~~~l~~~~~A~~~l~~al~l~P~n~~~~~~l~~l~~~~~~~~~~~k~~y~kmf~  330 (365)
                      +.++|.+..+++.+|.++..+|++++|+..|++++.++|++..+...++.+....++..+.. ..|.+.+.
T Consensus       166 ~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~-~~~~~a~~  235 (258)
T 3uq3_A          166 IKRAPEDARGYSNRAAALAKLMSFPEAIADCNKAIEKDPNFVRAYIRKATAQIAVKEYASAL-ETLDAART  235 (258)
T ss_dssp             HHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHH-HHHHHHHH
T ss_pred             HhcCcccHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHhhHHHHH-HHHHHHHH
Confidence            55555555555555555555555555555555555555555555555555555444443322 23444443

>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A

Probab=99.40  E-value=5.6e-13  Score=108.69  Aligned_cols=109  Identities=6%  Similarity=0.001  Sum_probs=96.0

Q ss_pred             hhhHHHHHHHHhcCHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHH
Q 017811          235 CHLNMAACLLKLKRYEEAIGQCSLVLGEDENNVKALFRRGKARAELGQTDAAREDFLKAGKFAPEDKSIARELRLLAEHE  314 (365)
Q Consensus       235 ~~~nla~~~~kl~~~~~A~~~~~~aL~~~p~n~ka~~~~g~a~~~l~~~~~A~~~l~~al~l~P~n~~~~~~l~~l~~~~  314 (365)
                      .++++|.++++.|+|++|+..+++++.++|.++.+|+.+|.++..+|+|++|+..|++++.++|+++.+...++.+....
T Consensus        20 ~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~   99 (142)
T 2xcb_A           20 QLYALGFNQYQAGKWDDAQKIFQALCMLDHYDARYFLGLGACRQSLGLYEQALQSYSYGALMDINEPRFPFHAAECHLQL   99 (142)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHHccHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHc
Confidence            48899999999999999999999999999999999999999999999999999999999999999999999999998888


Q ss_pred             HHHHHHHHHHHhcccCCCCCccccchhHHH
Q 017811          315 KAVYKKQKEIYKGIFGPRPEPKQKKNWLII  344 (365)
Q Consensus       315 ~~~~~~~k~~y~kmf~~~~~~~~~~~~~~~  344 (365)
                      ++..+... .|.+.+...|.......++..
T Consensus       100 g~~~~A~~-~~~~al~~~p~~~~~~~~~~~  128 (142)
T 2xcb_A          100 GDLDGAES-GFYSARALAAAQPAHEALAAR  128 (142)
T ss_dssp             TCHHHHHH-HHHHHHHHHHTCGGGHHHHHH
T ss_pred             CCHHHHHH-HHHHHHHhCCCCcchHHHHHH
Confidence            88776554 488887777765554444433

>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A

Probab=99.40  E-value=4e-12  Score=106.20  Aligned_cols=133  Identities=19%  Similarity=0.186  Sum_probs=90.9

Q ss_pred             HHhhhhhhhhhhhhhHHHHHHHHHHHHHhhccchhhhhhhhHHHHHHHhhchhhhHHHHHHHHhcCHHHHHHHHHHHHhC
Q 017811          183 DRRKMDGNALFKEEKLEEAMQQYEMAIAYMGDDFMFQLFGKYRDMALAVKNPCHLNMAACLLKLKRYEEAIGQCSLVLGE  262 (365)
Q Consensus       183 ~~~k~~G~~~~~~~~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~kl~~~~~A~~~~~~aL~~  262 (365)
                      ..+...|..++..|++++|+..|.+++...|.+..                 ++.++|.++...|++++|+..+.+++..
T Consensus        43 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~-----------------~~~~~a~~~~~~~~~~~A~~~~~~~~~~  105 (186)
T 3as5_A           43 DVALHLGIAYVKTGAVDRGTELLERSLADAPDNVK-----------------VATVLGLTYVQVQKYDLAVPLLIKVAEA  105 (186)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHH-----------------HHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHH-----------------HHHHHHHHHHHhcCHHHHHHHHHHHHhc
Confidence            34556666777777777777777777776665422                 3677777777777777777777777777


Q ss_pred             CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCC
Q 017811          263 DENNVKALFRRGKARAELGQTDAAREDFLKAGKFAPEDKSIARELRLLAEHEKAVYKKQKEIYKGIFGPRP  333 (365)
Q Consensus       263 ~p~n~ka~~~~g~a~~~l~~~~~A~~~l~~al~l~P~n~~~~~~l~~l~~~~~~~~~~~k~~y~kmf~~~~  333 (365)
                      +|.+..+++.+|.++..+|++++|+..|++++.+.|.+..+...+..+....++..+. ...|.+++...|
T Consensus       106 ~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A-~~~~~~~~~~~~  175 (186)
T 3as5_A          106 NPINFNVRFRLGVALDNLGRFDEAIDSFKIALGLRPNEGKVHRAIAFSYEQMGRHEEA-LPHFKKANELDE  175 (186)
T ss_dssp             CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHH-HHHHHHHHHHHH
T ss_pred             CcHhHHHHHHHHHHHHHcCcHHHHHHHHHHHHhcCccchHHHHHHHHHHHHcCCHHHH-HHHHHHHHHcCC
Confidence            7777777777777777777777777777777777777777777777766655554433 333555544333

>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A

Probab=99.39  E-value=5.4e-12  Score=121.40  Aligned_cols=136  Identities=24%  Similarity=0.265  Sum_probs=115.8

Q ss_pred             HhhhhhhhhhhhhhHHHHHHHHHHHHHhhccchhhhhhhhHHHHHHHhhchhhhHHHHHHHHhcCHHHHHHHHHHHHhCC
Q 017811          184 RRKMDGNALFKEEKLEEAMQQYEMAIAYMGDDFMFQLFGKYRDMALAVKNPCHLNMAACLLKLKRYEEAIGQCSLVLGED  263 (365)
Q Consensus       184 ~~k~~G~~~~~~~~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~kl~~~~~A~~~~~~aL~~~  263 (365)
                      .+...|..++..|++.+|+..|.+++.+.|.+...             ...++.++|.++.++|++++|+..|++++.++
T Consensus       259 ~~~~~~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~-------------~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~  325 (450)
T 2y4t_A          259 KLIESAEELIRDGRYTDATSKYESVMKTEPSIAEY-------------TVRSKERICHCFSKDEKPVEAIRVCSEVLQME  325 (450)
T ss_dssp             HHHHHHHHHHHHTCHHHHHHHHHHHHHHCCSSHHH-------------HHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHC
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHhcCCcchHH-------------HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC
Confidence            34556999999999999999999999998875331             23469999999999999999999999999999


Q ss_pred             CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCCCc
Q 017811          264 ENNVKALFRRGKARAELGQTDAAREDFLKAGKFAPEDKSIARELRLLAEHEKAVYKKQKEIYKGIFGPRPEP  335 (365)
Q Consensus       264 p~n~ka~~~~g~a~~~l~~~~~A~~~l~~al~l~P~n~~~~~~l~~l~~~~~~~~~~~k~~y~kmf~~~~~~  335 (365)
                      |++..+++.+|.++..+|++++|+..|+++++++|++..+...+..+....+..   ....+...++.....
T Consensus       326 p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~---~~~~~y~~lg~~~~~  394 (450)
T 2y4t_A          326 PDNVNALKDRAEAYLIEEMYDEAIQDYETAQEHNENDQQIREGLEKAQRLLKQS---QKRDYYKILGVKRNA  394 (450)
T ss_dssp             TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTSSSCHHHHHHHHHHHHHHHHH---HSCCSGGGSCSSTTC
T ss_pred             cccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCcchHHHHHHHHHHHHHhhcc---cchhHHHHhCCCccC
Confidence            999999999999999999999999999999999999999999999886665543   333455666654444

>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus}

Probab=99.39  E-value=2.3e-12  Score=120.86  Aligned_cols=129  Identities=15%  Similarity=0.087  Sum_probs=111.1

Q ss_pred             hhhhhhhhhhHHHHHHHHHHHHHhhcc--chhhhhhhhHHHHHHHhhchhhhHHHHHHHHhcCHHHHHHHHHHHHhCCCC
Q 017811          188 DGNALFKEEKLEEAMQQYEMAIAYMGD--DFMFQLFGKYRDMALAVKNPCHLNMAACLLKLKRYEEAIGQCSLVLGEDEN  265 (365)
Q Consensus       188 ~G~~~~~~~~y~~A~~~y~~al~~~~~--~~~~~~~~~~~~~~~~~~~~~~~nla~~~~kl~~~~~A~~~~~~aL~~~p~  265 (365)
                      .|..+...|++.+|+..|++++...|.  +..                 +++++|.+|..+|++++|+..++++++++|+
T Consensus       183 l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~-----------------~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~  245 (365)
T 4eqf_A          183 MSKSPVDSSVLEGVKELYLEAAHQNGDMIDPD-----------------LQTGLGVLFHLSGEFNRAIDAFNAALTVRPE  245 (365)
T ss_dssp             ------CCHHHHHHHHHHHHHHHHSCSSCCHH-----------------HHHHHHHHHHHHTCHHHHHHHHHHHHHHCTT
T ss_pred             HHHHHhhhhhHHHHHHHHHHHHHhCcCccCHH-----------------HHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC
Confidence            488999999999999999999999987  422                 4899999999999999999999999999999


Q ss_pred             CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCCC
Q 017811          266 NVKALFRRGKARAELGQTDAAREDFLKAGKFAPEDKSIARELRLLAEHEKAVYKKQKEIYKGIFGPRPE  334 (365)
Q Consensus       266 n~ka~~~~g~a~~~l~~~~~A~~~l~~al~l~P~n~~~~~~l~~l~~~~~~~~~~~k~~y~kmf~~~~~  334 (365)
                      ++.+++.+|.++..+|++++|+..|++++.++|++..+...++.+....+++.++. ..|.+++...|.
T Consensus       246 ~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~-~~~~~al~~~~~  313 (365)
T 4eqf_A          246 DYSLWNRLGATLANGDRSEEAVEAYTRALEIQPGFIRSRYNLGISCINLGAYREAV-SNFLTALSLQRK  313 (365)
T ss_dssp             CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCHHHH-HHHHHHHHHHHC
T ss_pred             CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHCCCHHHHH-HHHHHHHHhCcc
Confidence            99999999999999999999999999999999999999999999988887766554 447777665554

>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1

Probab=99.39  E-value=3.3e-12  Score=120.94  Aligned_cols=98  Identities=18%  Similarity=0.129  Sum_probs=59.5

Q ss_pred             hhHHHHHHHHhcCHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHHH
Q 017811          236 HLNMAACLLKLKRYEEAIGQCSLVLGEDENNVKALFRRGKARAELGQTDAAREDFLKAGKFAPEDKSIARELRLLAEHEK  315 (365)
Q Consensus       236 ~~nla~~~~kl~~~~~A~~~~~~aL~~~p~n~ka~~~~g~a~~~l~~~~~A~~~l~~al~l~P~n~~~~~~l~~l~~~~~  315 (365)
                      +.++|.++.+.|++++|+..++++++++|.++.+++.+|.++...|++++|+..|+++++++|++..+...+..+....+
T Consensus       274 ~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g  353 (388)
T 1w3b_A          274 YCNLANALKEKGSVAEAEDCYNTALRLCPTHADSLNNLANIKREQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQG  353 (388)
T ss_dssp             HHHHHHHHHHHSCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHTTSCTTCHHHHHHHHHHHHTTT
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHhhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcC
Confidence            56666666666666666666666666666666666666666666666666666666666666666666666666555544


Q ss_pred             HHHHHHHHHHhcccCCCCC
Q 017811          316 AVYKKQKEIYKGIFGPRPE  334 (365)
Q Consensus       316 ~~~~~~k~~y~kmf~~~~~  334 (365)
                      +..+. ...|.+++...|+
T Consensus       354 ~~~~A-~~~~~~a~~~~p~  371 (388)
T 1w3b_A          354 KLQEA-LMHYKEAIRISPT  371 (388)
T ss_dssp             CCHHH-HHHHHHHHTTCTT
T ss_pred             CHHHH-HHHHHHHHhhCCC
Confidence            44433 3335666555543

>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus}

Probab=99.39  E-value=9.4e-13  Score=123.57  Aligned_cols=135  Identities=18%  Similarity=0.066  Sum_probs=104.2

Q ss_pred             HHHhhhhhhhhhhhhhHHHHHHHHHHHHHhhccchhhhhhhhHHHHHHHhhchhhhHHHHHHHHhcCHHHHHHHHHHHHh
Q 017811          182 ADRRKMDGNALFKEEKLEEAMQQYEMAIAYMGDDFMFQLFGKYRDMALAVKNPCHLNMAACLLKLKRYEEAIGQCSLVLG  261 (365)
Q Consensus       182 a~~~k~~G~~~~~~~~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~kl~~~~~A~~~~~~aL~  261 (365)
                      +..+...|..+++.|+|.+|+..|++++...|.+..                 +++++|.+|..+|++++|+..+++++.
T Consensus        65 ~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~-----------------~~~~lg~~~~~~g~~~~A~~~~~~al~  127 (365)
T 4eqf_A           65 WPGAFEEGLKRLKEGDLPVTILFMEAAILQDPGDAE-----------------AWQFLGITQAENENEQAAIVALQRCLE  127 (365)
T ss_dssp             CTTHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHH-----------------HHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             hhHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcCCHH-----------------HHHHHHHHHHHCCCHHHHHHHHHHHHh
Confidence            345678899999999999999999999999987643                 489999999999999999999999999


Q ss_pred             CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCcHHHHHHH----------HHHHHHHHHHHHHHHHHHhcccCC
Q 017811          262 EDENNVKALFRRGKARAELGQTDAAREDFLKAGKFAPEDKSIAREL----------RLLAEHEKAVYKKQKEIYKGIFGP  331 (365)
Q Consensus       262 ~~p~n~ka~~~~g~a~~~l~~~~~A~~~l~~al~l~P~n~~~~~~l----------~~l~~~~~~~~~~~k~~y~kmf~~  331 (365)
                      ++|++..+++.+|.+|..+|++++|+..|++++.++|++..+...+          ..+....++..+ ....|.+++..
T Consensus       128 ~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~-A~~~~~~al~~  206 (365)
T 4eqf_A          128 LQPNNLKALMALAVSYTNTSHQQDACEALKNWIKQNPKYKYLVKNKKGSPGLTRRMSKSPVDSSVLEG-VKELYLEAAHQ  206 (365)
T ss_dssp             HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCHHHHCC-------------------CCHHHHH-HHHHHHHHHHH
T ss_pred             cCCCCHHHHHHHHHHHHccccHHHHHHHHHHHHHhCccchHHHhhhccchHHHHHHHHHHhhhhhHHH-HHHHHHHHHHh
Confidence            9999999999999999999999999999999999888755444333          444444444433 33446666555


Q ss_pred             CCC
Q 017811          332 RPE  334 (365)
Q Consensus       332 ~~~  334 (365)
                      .|.
T Consensus       207 ~p~  209 (365)
T 4eqf_A          207 NGD  209 (365)
T ss_dssp             SCS
T ss_pred             CcC
Confidence            554

>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A

Probab=99.38  E-value=3.2e-12  Score=106.75  Aligned_cols=137  Identities=15%  Similarity=0.122  Sum_probs=121.0

Q ss_pred             HHHHhhhhhhhhhhhhhHHHHHHHHHHHHHhhccchhhhhhhhHHHHHHHhhchhhhHHHHHHHHhcCHHHHHHHHHHHH
Q 017811          181 AADRRKMDGNALFKEEKLEEAMQQYEMAIAYMGDDFMFQLFGKYRDMALAVKNPCHLNMAACLLKLKRYEEAIGQCSLVL  260 (365)
Q Consensus       181 ~a~~~k~~G~~~~~~~~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~kl~~~~~A~~~~~~aL  260 (365)
                      .+..+...|..++..|++.+|+..|.+++...|.+..                 ++.++|.++...|++++|+..+.+++
T Consensus         7 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~-----------------~~~~~~~~~~~~~~~~~A~~~~~~~~   69 (186)
T 3as5_A            7 RQVYYRDKGISHAKAGRYSQAVMLLEQVYDADAFDVD-----------------VALHLGIAYVKTGAVDRGTELLERSL   69 (186)
T ss_dssp             HHHHHHHHHHHHHHHTCHHHHHHHHTTTCCTTSCCHH-----------------HHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred             hhHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCccChH-----------------HHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence            4667888999999999999999999999998887532                 48999999999999999999999999


Q ss_pred             hCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCCCc
Q 017811          261 GEDENNVKALFRRGKARAELGQTDAAREDFLKAGKFAPEDKSIARELRLLAEHEKAVYKKQKEIYKGIFGPRPEP  335 (365)
Q Consensus       261 ~~~p~n~ka~~~~g~a~~~l~~~~~A~~~l~~al~l~P~n~~~~~~l~~l~~~~~~~~~~~k~~y~kmf~~~~~~  335 (365)
                      ..+|.+..+++.+|.++...|++++|+..|++++.++|.+..+...+..+....++..+. ...|.+++...+..
T Consensus        70 ~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A-~~~~~~~~~~~~~~  143 (186)
T 3as5_A           70 ADAPDNVKVATVLGLTYVQVQKYDLAVPLLIKVAEANPINFNVRFRLGVALDNLGRFDEA-IDSFKIALGLRPNE  143 (186)
T ss_dssp             HHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHH-HHHHHHHHHHCTTC
T ss_pred             hcCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCcHhHHHHHHHHHHHHHcCcHHHH-HHHHHHHHhcCccc
Confidence            999999999999999999999999999999999999999999999999887777666544 44577777665544

>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus}

Probab=99.38  E-value=3.8e-12  Score=117.79  Aligned_cols=109  Identities=23%  Similarity=0.347  Sum_probs=71.6

Q ss_pred             HHHhhhhhhhhhhhhhHHHHHHHHHHHHHhhccchhhhhhhhHHHHHHHhhchhhhHHHHHHHHhcCHHHHHHHHHHHHh
Q 017811          182 ADRRKMDGNALFKEEKLEEAMQQYEMAIAYMGDDFMFQLFGKYRDMALAVKNPCHLNMAACLLKLKRYEEAIGQCSLVLG  261 (365)
Q Consensus       182 a~~~k~~G~~~~~~~~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~kl~~~~~A~~~~~~aL~  261 (365)
                      +..+...|..++..|+|.+|+..|.+++...|.+..                 +++++|.|+..+|++++|+..+.+++.
T Consensus         3 ~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~p~~~~-----------------~~~~~a~~~~~~~~~~~A~~~~~~~~~   65 (359)
T 3ieg_A            3 VEKHLELGKKLLAAGQLADALSQFHAAVDGDPDNYI-----------------AYYRRATVFLAMGKSKAALPDLTKVIA   65 (359)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHH-----------------HHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcccHH-----------------HHHHHHHHHHHccCHHHHHHHHHHHHH
Confidence            456777888888888888888888888888776533                 355666666666666666666666666


Q ss_pred             CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC---CcHHHHHHH
Q 017811          262 EDENNVKALFRRGKARAELGQTDAAREDFLKAGKFAP---EDKSIAREL  307 (365)
Q Consensus       262 ~~p~n~ka~~~~g~a~~~l~~~~~A~~~l~~al~l~P---~n~~~~~~l  307 (365)
                      ++|++..+++.+|.++..+|++++|+..|++++.++|   ++..+...+
T Consensus        66 ~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l  114 (359)
T 3ieg_A           66 LKMDFTAARLQRGHLLLKQGKLDEAEDDFKKVLKSNPSEQEEKEAESQL  114 (359)
T ss_dssp             HCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTSCCCHHHHHHHHHHH
T ss_pred             hCCCcchHHHHHHHHHHHcCChHHHHHHHHHHHhcCCcccChHHHHHHH
Confidence            6666666666666666666666666666666666666   555444444

>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1

Probab=99.38  E-value=7e-12  Score=109.98  Aligned_cols=135  Identities=16%  Similarity=0.123  Sum_probs=101.4

Q ss_pred             HHHhhhhhhhhhhhhhHHHHHHHHHHHHHhhccchhhhhhhhHHHHHHHhhchhhhHHHHHHHHhcCHHHHHHHHHHHHh
Q 017811          182 ADRRKMDGNALFKEEKLEEAMQQYEMAIAYMGDDFMFQLFGKYRDMALAVKNPCHLNMAACLLKLKRYEEAIGQCSLVLG  261 (365)
Q Consensus       182 a~~~k~~G~~~~~~~~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~kl~~~~~A~~~~~~aL~  261 (365)
                      +..+...|..++..|++.+|+..|.+++...|.+..                 ++.++|.++..+|++++|+..+++++.
T Consensus        57 ~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~-----------------~~~~la~~~~~~~~~~~A~~~~~~~~~  119 (243)
T 2q7f_A           57 AIPYINFANLLSSVNELERALAFYDKALELDSSAAT-----------------AYYGAGNVYVVKEMYKEAKDMFEKALR  119 (243)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHH-----------------HHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCcchH-----------------HHHHHHHHHHHhccHHHHHHHHHHHHH
Confidence            456677888889999999999999999988876532                 377778888888888888888888888


Q ss_pred             CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCCC
Q 017811          262 EDENNVKALFRRGKARAELGQTDAAREDFLKAGKFAPEDKSIARELRLLAEHEKAVYKKQKEIYKGIFGPRPE  334 (365)
Q Consensus       262 ~~p~n~ka~~~~g~a~~~l~~~~~A~~~l~~al~l~P~n~~~~~~l~~l~~~~~~~~~~~k~~y~kmf~~~~~  334 (365)
                      .+|.+..+++.+|.++..+|++++|+..|++++.++|++..+...+..+....++..+.. ..|.+++...+.
T Consensus       120 ~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~-~~~~~~~~~~~~  191 (243)
T 2q7f_A          120 AGMENGDLFYMLGTVLVKLEQPKLALPYLQRAVELNENDTEARFQFGMCLANEGMLDEAL-SQFAAVTEQDPG  191 (243)
T ss_dssp             HTCCSHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCHHHH-HHHHHHHHHCTT
T ss_pred             hCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHcCCHHHHH-HHHHHHHHhCcc
Confidence            888888888888888888888888888888888888877777777777766665554433 346666555443

>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1

Probab=99.37  E-value=6.7e-12  Score=118.81  Aligned_cols=154  Identities=15%  Similarity=0.122  Sum_probs=120.6

Q ss_pred             HHHhhhhhhhhhhhhhHHHHHHHHHHHHHhhccchhhhh-----------hhhHHHHH---HH---hhchhhhHHHHHHH
Q 017811          182 ADRRKMDGNALFKEEKLEEAMQQYEMAIAYMGDDFMFQL-----------FGKYRDMA---LA---VKNPCHLNMAACLL  244 (365)
Q Consensus       182 a~~~k~~G~~~~~~~~y~~A~~~y~~al~~~~~~~~~~~-----------~~~~~~~~---~~---~~~~~~~nla~~~~  244 (365)
                      +..+...|..+...|++.+|+..|++++.+.|.+...-.           .++-....   ..   -...++.++|.+|.
T Consensus       169 ~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~  248 (388)
T 1w3b_A          169 AVAWSNLGCVFNAQGEIWLAIHHFEKAVTLDPNFLDAYINLGNVLKEARIFDRAVAAYLRALSLSPNHAVVHGNLACVYY  248 (388)
T ss_dssp             HHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCTTHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcCCHHHHHHHHHHHH
Confidence            566777888888888888888888888888776532100           00000000   00   11346889999999


Q ss_pred             HhcCHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHHHHHHHHHHHH
Q 017811          245 KLKRYEEAIGQCSLVLGEDENNVKALFRRGKARAELGQTDAAREDFLKAGKFAPEDKSIARELRLLAEHEKAVYKKQKEI  324 (365)
Q Consensus       245 kl~~~~~A~~~~~~aL~~~p~n~ka~~~~g~a~~~l~~~~~A~~~l~~al~l~P~n~~~~~~l~~l~~~~~~~~~~~k~~  324 (365)
                      ++|++++|+..++++++++|+++.+++.+|.++..+|++++|+..|+++++++|++..+...+..+....++..+. ...
T Consensus       249 ~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A-~~~  327 (388)
T 1w3b_A          249 EQGLIDLAIDTYRRAIELQPHFPDAYCNLANALKEKGSVAEAEDCYNTALRLCPTHADSLNNLANIKREQGNIEEA-VRL  327 (388)
T ss_dssp             HTTCHHHHHHHHHHHHHTCSSCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHH-HHH
T ss_pred             HcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcccHHHHHHHHHHHHHcCCHHHH-HHH
Confidence            9999999999999999999999999999999999999999999999999999999999999999888777766554 456


Q ss_pred             HhcccCCCCCcc
Q 017811          325 YKGIFGPRPEPK  336 (365)
Q Consensus       325 y~kmf~~~~~~~  336 (365)
                      |.+++...|+..
T Consensus       328 ~~~al~~~p~~~  339 (388)
T 1w3b_A          328 YRKALEVFPEFA  339 (388)
T ss_dssp             HHHHTTSCTTCH
T ss_pred             HHHHHhcCCCcH
Confidence            999988777543

>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae}

Probab=99.37  E-value=2.3e-12  Score=113.93  Aligned_cols=153  Identities=18%  Similarity=0.196  Sum_probs=111.3

Q ss_pred             HHHHhhhhhhhhhhhhhHHHHHHHHHHHHHhhccchhhhh--------hhhHH------HHHHH----------hhchhh
Q 017811          181 AADRRKMDGNALFKEEKLEEAMQQYEMAIAYMGDDFMFQL--------FGKYR------DMALA----------VKNPCH  236 (365)
Q Consensus       181 ~a~~~k~~G~~~~~~~~y~~A~~~y~~al~~~~~~~~~~~--------~~~~~------~~~~~----------~~~~~~  236 (365)
                      .+..+...|..++..|+|.+|+..|.+++... .+...-.        .+...      .....          ....++
T Consensus         4 ~a~~~~~~g~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~   82 (258)
T 3uq3_A            4 MADKEKAEGNKFYKARQFDEAIEHYNKAWELH-KDITYLNNRAAAEYEKGEYETAISTLNDAVEQGREMRADYKVISKSF   82 (258)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-CCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHhccHHHHHHHHHHHHHhh-ccHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccccchHHHHHHH
Confidence            45666777777777777777777777777665 3221100        00000      00000          014678


Q ss_pred             hHHHHHHHHhcCHHHHHHHHHHHHh--------------------------CCCCCHHHHHHHHHHHHHcCCHHHHHHHH
Q 017811          237 LNMAACLLKLKRYEEAIGQCSLVLG--------------------------EDENNVKALFRRGKARAELGQTDAAREDF  290 (365)
Q Consensus       237 ~nla~~~~kl~~~~~A~~~~~~aL~--------------------------~~p~n~ka~~~~g~a~~~l~~~~~A~~~l  290 (365)
                      .++|.+|..+|++++|+.++.+++.                          .+|.+..+++.+|.++..+|++++|+..|
T Consensus        83 ~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~  162 (258)
T 3uq3_A           83 ARIGNAYHKLGDLKKTIEYYQKSLTEHRTADILTKLRNAEKELKKAEAEAYVNPEKAEEARLEGKEYFTKSDWPNAVKAY  162 (258)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred             HHHHHHHHHcccHHHHHHHHHHHHhcCchhHHHHHHhHHHHHHHHHHHHHHcCcchHHHHHHHHHHHHHhcCHHHHHHHH
Confidence            8999999999999999999999998                          77778889999999999999999999999


Q ss_pred             HHHHhhCCCcHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCCCc
Q 017811          291 LKAGKFAPEDKSIARELRLLAEHEKAVYKKQKEIYKGIFGPRPEP  335 (365)
Q Consensus       291 ~~al~l~P~n~~~~~~l~~l~~~~~~~~~~~k~~y~kmf~~~~~~  335 (365)
                      ++++.++|.+..+...+..+....++..+.. ..|.+.+...|..
T Consensus       163 ~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~-~~~~~al~~~~~~  206 (258)
T 3uq3_A          163 TEMIKRAPEDARGYSNRAAALAKLMSFPEAI-ADCNKAIEKDPNF  206 (258)
T ss_dssp             HHHHHHCTTCHHHHHHHHHHHHHTTCHHHHH-HHHHHHHHHCTTC
T ss_pred             HHHHhcCcccHHHHHHHHHHHHHhCCHHHHH-HHHHHHHHhCHHH
Confidence            9999999999999988988887777766554 4477777666654

>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii}

Probab=99.37  E-value=2.5e-12  Score=115.12  Aligned_cols=128  Identities=15%  Similarity=0.065  Sum_probs=98.5

Q ss_pred             hhhhhhhhhhHHHHHHHHHHHHHhhccchhhhhhhhHHHHHHHhhchhhhHHHHHHHHhcCHHHHHHHHHHHHhCCCCCH
Q 017811          188 DGNALFKEEKLEEAMQQYEMAIAYMGDDFMFQLFGKYRDMALAVKNPCHLNMAACLLKLKRYEEAIGQCSLVLGEDENNV  267 (365)
Q Consensus       188 ~G~~~~~~~~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~kl~~~~~A~~~~~~aL~~~p~n~  267 (365)
                      .|..+...|+|++|+..|.+++...|.+                 ..++.++|.+|..+|++++|+.++++++.++|.++
T Consensus        80 lg~~~~~~~~~~~A~~~~~~a~~~~~~~-----------------~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~  142 (272)
T 3u4t_A           80 YGKILMKKGQDSLAIQQYQAAVDRDTTR-----------------LDMYGQIGSYFYNKGNFPLAIQYMEKQIRPTTTDP  142 (272)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHHHHHSTTC-----------------THHHHHHHHHHHHTTCHHHHHHHHGGGCCSSCCCH
T ss_pred             HHHHHHHcccHHHHHHHHHHHHhcCccc-----------------HHHHHHHHHHHHHccCHHHHHHHHHHHhhcCCCcH
Confidence            4555556666666666666666655554                 34699999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHHHHH--HHHHHHHHhcccCCC
Q 017811          268 KALFRRGKARAELGQTDAAREDFLKAGKFAPEDKSIARELRLLAEHEKAV--YKKQKEIYKGIFGPR  332 (365)
Q Consensus       268 ka~~~~g~a~~~l~~~~~A~~~l~~al~l~P~n~~~~~~l~~l~~~~~~~--~~~~k~~y~kmf~~~  332 (365)
                      .+++.+|...+..+++++|+..|+++++++|++..+...+..+.......  .......|.+++...
T Consensus       143 ~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~  209 (272)
T 3u4t_A          143 KVFYELGQAYYYNKEYVKADSSFVKVLELKPNIYIGYLWRARANAAQDPDTKQGLAKPYYEKLIEVC  209 (272)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHSTTCSSCTTHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHhCccchHHHHHHHHHHHHcCcchhhHHHHHHHHHHHHHH
Confidence            99999995555556999999999999999999998888888776665431  112344566666544

>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A

Probab=99.37  E-value=6.3e-12  Score=123.64  Aligned_cols=115  Identities=23%  Similarity=0.298  Sum_probs=101.0

Q ss_pred             CCCCCHHHHHHHHHHhhhhhhhhhhhhhHHHHHHHHHHHHHhhccchhhhhhhhHHHHHHHhhchhhhHHHHHHHHhcCH
Q 017811          170 RSDMTVEERIGAADRRKMDGNALFKEEKLEEAMQQYEMAIAYMGDDFMFQLFGKYRDMALAVKNPCHLNMAACLLKLKRY  249 (365)
Q Consensus       170 ~~~~~~~e~~~~a~~~k~~G~~~~~~~~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~kl~~~  249 (365)
                      ...++.++....+..+...|+.+++.|+|.+|+..|++++...|.+..                 +++++|.||.++|+|
T Consensus        13 ~~~~~~~~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~-----------------~~~~la~~~~~~g~~   75 (537)
T 3fp2_A           13 LKGLSPSQRQAYAVQLKNRGNHFFTAKNFNEAIKYYQYAIELDPNEPV-----------------FYSNISACYISTGDL   75 (537)
T ss_dssp             HTTSCHHHHHHHHHHHHHHHHHHHHTTCCC-CHHHHHHHHHHCTTCHH-----------------HHHHHHHHHHHHTCH
T ss_pred             hcCCCcchhHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhCCCCcH-----------------HHHHHHHHHHHcCCH
Confidence            456788889999999999999999999999999999999999998643                 499999999999999


Q ss_pred             HHHHHHHHHHHhCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCcHH
Q 017811          250 EEAIGQCSLVLGEDENNVKALFRRGKARAELGQTDAAREDFLKAGKFAPEDKS  302 (365)
Q Consensus       250 ~~A~~~~~~aL~~~p~n~ka~~~~g~a~~~l~~~~~A~~~l~~al~l~P~n~~  302 (365)
                      ++|+..|++++.++|+++.+++.+|.++..+|++++|+..|+ ++.++|+...
T Consensus        76 ~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~-~~~~~~~~~~  127 (537)
T 3fp2_A           76 EKVIEFTTKALEIKPDHSKALLRRASANESLGNFTDAMFDLS-VLSLNGDFDG  127 (537)
T ss_dssp             HHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHH-HHC-------
T ss_pred             HHHHHHHHHHHhcCCchHHHHHHHHHHHHHcCCHHHHHHHHH-HHhcCCCCCh
Confidence            999999999999999999999999999999999999999996 8888887543

>2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae}

Probab=99.36  E-value=3.1e-13  Score=104.27  Aligned_cols=95  Identities=25%  Similarity=0.329  Sum_probs=82.9

Q ss_pred             HHHHhhhhhhhhhhhhhHHHHHHHHHHHHHhhccchhhhhhhhHHHHHHHhhchhhhHHHHHHHHhcCHHHHHHHHHHHH
Q 017811          181 AADRRKMDGNALFKEEKLEEAMQQYEMAIAYMGDDFMFQLFGKYRDMALAVKNPCHLNMAACLLKLKRYEEAIGQCSLVL  260 (365)
Q Consensus       181 ~a~~~k~~G~~~~~~~~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~kl~~~~~A~~~~~~aL  260 (365)
                      .+..+...|..++..|+|.+|+..|++++.+.|.+..                 +++|+|.||.++|+|++|+.+|++++
T Consensus         3 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~-----------------~~~~lg~~~~~~g~~~~A~~~~~~al   65 (111)
T 2l6j_A            3 QFEKQKEQGNSLFKQGLYREAVHCYDQLITAQPQNPV-----------------GYSNKAMALIKLGEYTQAIQMCQQGL   65 (111)
T ss_dssp             HHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHH-----------------HHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHH-----------------HHHHHHHHHHHhcCHHHHHHHHHHHH
Confidence            4567888999999999999999999999999887643                 48899999999999999999999999


Q ss_pred             hCCCCC------HHHHHHHHHHHHHcCCHHHHHHHHHH
Q 017811          261 GEDENN------VKALFRRGKARAELGQTDAAREDFLK  292 (365)
Q Consensus       261 ~~~p~n------~ka~~~~g~a~~~l~~~~~A~~~l~~  292 (365)
                      .++|++      ..+++++|.++..+|+++.|+..+++
T Consensus        66 ~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~  103 (111)
T 2l6j_A           66 RYTSTAEHVAIRSKLQYRLELAQGAVGSVQIPVVEVDE  103 (111)
T ss_dssp             TSCSSTTSHHHHHHHHHHHHHHHHHHHCCCCCSSSSSS
T ss_pred             HhCCCccHHHHHHHHHHHHHHHHHHHHhHhhhHhHHHH
Confidence            999998      89999999999999988888766654

>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis}

Probab=99.36  E-value=1.3e-11  Score=106.69  Aligned_cols=151  Identities=12%  Similarity=0.010  Sum_probs=94.8

Q ss_pred             HHHhhhhhhhhhhhhhHHHHHHHHHHHHHhhccchhhh--------hhhhHHHH---HH---H---hhchhhhHHHHHHH
Q 017811          182 ADRRKMDGNALFKEEKLEEAMQQYEMAIAYMGDDFMFQ--------LFGKYRDM---AL---A---VKNPCHLNMAACLL  244 (365)
Q Consensus       182 a~~~k~~G~~~~~~~~y~~A~~~y~~al~~~~~~~~~~--------~~~~~~~~---~~---~---~~~~~~~nla~~~~  244 (365)
                      +..+...|..++..|++.+|+..|.+++...|.+...-        ..+...+.   ..   .   -...++.++|.++.
T Consensus         8 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~   87 (225)
T 2vq2_A            8 SNIKTQLAMEYMRGQDYRQATASIEDALKSDPKNELAWLVRAEIYQYLKVNDKAQESFRQALSIKPDSAEINNNYGWFLC   87 (225)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHhhHHHHHHHHHHHHHhCccchHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChHHHHHHHHHHH
Confidence            44555666666666666666666666666665532210        00000000   00   0   01234677778888


Q ss_pred             Hh-cCHHHHHHHHHHHHh--CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHHHHHHHHH
Q 017811          245 KL-KRYEEAIGQCSLVLG--EDENNVKALFRRGKARAELGQTDAAREDFLKAGKFAPEDKSIARELRLLAEHEKAVYKKQ  321 (365)
Q Consensus       245 kl-~~~~~A~~~~~~aL~--~~p~n~ka~~~~g~a~~~l~~~~~A~~~l~~al~l~P~n~~~~~~l~~l~~~~~~~~~~~  321 (365)
                      .+ |++++|+..+++++.  .+|.+..+++.+|.++..+|++++|+..|++++.++|++..+...+..+....++..+..
T Consensus        88 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~  167 (225)
T 2vq2_A           88 GRLNRPAESMAYFDKALADPTYPTPYIANLNKGICSAKQGQFGLAEAYLKRSLAAQPQFPPAFKELARTKMLAGQLGDAD  167 (225)
T ss_dssp             TTTCCHHHHHHHHHHHHTSTTCSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTCHHHHH
T ss_pred             HhcCcHHHHHHHHHHHHcCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHcCCHHHHH
Confidence            88 888888888888777  566667777888888888888888888888888888877777777777766666655443


Q ss_pred             HHHHhcccCCCC
Q 017811          322 KEIYKGIFGPRP  333 (365)
Q Consensus       322 k~~y~kmf~~~~  333 (365)
                       ..|.+++...|
T Consensus       168 -~~~~~~~~~~~  178 (225)
T 2vq2_A          168 -YYFKKYQSRVE  178 (225)
T ss_dssp             -HHHHHHHHHHC
T ss_pred             -HHHHHHHHhCC
Confidence             34666665544

>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A

Probab=99.36  E-value=1.5e-11  Score=108.87  Aligned_cols=133  Identities=18%  Similarity=0.133  Sum_probs=98.5

Q ss_pred             hhhhhhhhhhhhhHHHHHHHHHHHHHhhccchhhhhhhhHHHHHHHhhchhhhHHHHHHHHhcCHHHHHHHHHHHHh--C
Q 017811          185 RKMDGNALFKEEKLEEAMQQYEMAIAYMGDDFMFQLFGKYRDMALAVKNPCHLNMAACLLKLKRYEEAIGQCSLVLG--E  262 (365)
Q Consensus       185 ~k~~G~~~~~~~~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~kl~~~~~A~~~~~~aL~--~  262 (365)
                      +...|..++..|++.+|+..|.+++...|.+                 ..++.++|.+|..+|++++|+..+.+++.  .
T Consensus        74 ~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~-----------------~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~  136 (252)
T 2ho1_A           74 HAALAVVFQTEMEPKLADEEYRKALASDSRN-----------------ARVLNNYGGFLYEQKRYEEAYQRLLEASQDTL  136 (252)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC-----------------HHHHHHHHHHHHHTTCHHHHHHHHHHHTTCTT
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHHCcCc-----------------HHHHHHHHHHHHHHhHHHHHHHHHHHHHhCcc
Confidence            3444555555555555555555555554443                 23578888888889999999999998888  7


Q ss_pred             CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCCCc
Q 017811          263 DENNVKALFRRGKARAELGQTDAAREDFLKAGKFAPEDKSIARELRLLAEHEKAVYKKQKEIYKGIFGPRPEP  335 (365)
Q Consensus       263 ~p~n~ka~~~~g~a~~~l~~~~~A~~~l~~al~l~P~n~~~~~~l~~l~~~~~~~~~~~k~~y~kmf~~~~~~  335 (365)
                      +|.+..+++.+|.++..+|++++|+..|++++.++|.+..+...+..+....++..++ ...|.+++...+..
T Consensus       137 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A-~~~~~~~~~~~~~~  208 (252)
T 2ho1_A          137 YPERSRVFENLGLVSLQMKKPAQAKEYFEKSLRLNRNQPSVALEMADLLYKEREYVPA-RQYYDLFAQGGGQN  208 (252)
T ss_dssp             CTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHH-HHHHHHHHTTSCCC
T ss_pred             CcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcCCHHHH-HHHHHHHHHhCcCc
Confidence            8888888889999999999999999999999988888888888888887776666544 44577777766643

>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1

Probab=99.36  E-value=5.1e-12  Score=110.89  Aligned_cols=138  Identities=19%  Similarity=0.149  Sum_probs=121.3

Q ss_pred             HHHhhhhhhhhhhhhhHHHHHHHHHHHHHhhccchhhhhhhhHHHHHHHhhchhhhHHHHHHHHhcCHHHHHHHHHHHHh
Q 017811          182 ADRRKMDGNALFKEEKLEEAMQQYEMAIAYMGDDFMFQLFGKYRDMALAVKNPCHLNMAACLLKLKRYEEAIGQCSLVLG  261 (365)
Q Consensus       182 a~~~k~~G~~~~~~~~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~kl~~~~~A~~~~~~aL~  261 (365)
                      +..+...|..++..|++++|+..|.+++...|.+..                 ++.++|.++..+|++++|+..+++++.
T Consensus        91 ~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~-----------------~~~~~a~~~~~~~~~~~A~~~~~~~~~  153 (243)
T 2q7f_A           91 ATAYYGAGNVYVVKEMYKEAKDMFEKALRAGMENGD-----------------LFYMLGTVLVKLEQPKLALPYLQRAVE  153 (243)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTCCSHH-----------------HHHHHHHHHHHTSCHHHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCCHH-----------------HHHHHHHHHHHhccHHHHHHHHHHHHH
Confidence            345677899999999999999999999999987633                 488999999999999999999999999


Q ss_pred             CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCCCccc
Q 017811          262 EDENNVKALFRRGKARAELGQTDAAREDFLKAGKFAPEDKSIARELRLLAEHEKAVYKKQKEIYKGIFGPRPEPKQ  337 (365)
Q Consensus       262 ~~p~n~ka~~~~g~a~~~l~~~~~A~~~l~~al~l~P~n~~~~~~l~~l~~~~~~~~~~~k~~y~kmf~~~~~~~~  337 (365)
                      .+|.+..+++.+|.++..+|++++|+..|++++.++|++..+...+..+....++..+. ...|.+++...|+...
T Consensus       154 ~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A-~~~~~~~~~~~p~~~~  228 (243)
T 2q7f_A          154 LNENDTEARFQFGMCLANEGMLDEALSQFAAVTEQDPGHADAFYNAGVTYAYKENREKA-LEMLDKAIDIQPDHML  228 (243)
T ss_dssp             HCTTCHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCTTHH-HHHHHHHHHHCTTCHH
T ss_pred             hCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHccCHHHH-HHHHHHHHccCcchHH
Confidence            99999999999999999999999999999999999999999999999988777766544 4558888777665443

>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens}

Probab=99.36  E-value=5.8e-12  Score=115.47  Aligned_cols=161  Identities=12%  Similarity=0.033  Sum_probs=121.2

Q ss_pred             HHhhhhhhhhhhhhhHHHHHHHHHHHHHhhccchhhhh--------hhhHHH---HHHH------hhchhhhHHHHHHHH
Q 017811          183 DRRKMDGNALFKEEKLEEAMQQYEMAIAYMGDDFMFQL--------FGKYRD---MALA------VKNPCHLNMAACLLK  245 (365)
Q Consensus       183 ~~~k~~G~~~~~~~~y~~A~~~y~~al~~~~~~~~~~~--------~~~~~~---~~~~------~~~~~~~nla~~~~k  245 (365)
                      ..+...|..++..|+|.+|+..|.+++...|.+...-.        .+...+   ....      -...++.++|.++..
T Consensus       126 ~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~  205 (330)
T 3hym_B          126 PAWIAYGHSFAVESEHDQAMAAYFTAAQLMKGCHLPMLYIGLEYGLTNNSKLAERFFSQALSIAPEDPFVMHEVGVVAFQ  205 (330)
T ss_dssp             HHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHccCHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhCCCChHHHHHHHHHHHH
Confidence            44666777777777777777777777777765322100        010111   1111      013468999999999


Q ss_pred             hcCHHHHHHHHHHHHhCC---------CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHHHH
Q 017811          246 LKRYEEAIGQCSLVLGED---------ENNVKALFRRGKARAELGQTDAAREDFLKAGKFAPEDKSIARELRLLAEHEKA  316 (365)
Q Consensus       246 l~~~~~A~~~~~~aL~~~---------p~n~ka~~~~g~a~~~l~~~~~A~~~l~~al~l~P~n~~~~~~l~~l~~~~~~  316 (365)
                      +|++++|+..+++++.+.         |.++.+++.+|.++..+|++++|+..|+++++++|++..+...++.+....++
T Consensus       206 ~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~  285 (330)
T 3hym_B          206 NGEWKTAEKWFLDALEKIKAIGNEVTVDKWEPLLNNLGHVCRKLKKYAEALDYHRQALVLIPQNASTYSAIGYIHSLMGN  285 (330)
T ss_dssp             TTCHHHHHHHHHHHHHHHTTTSCSCTTTTCCHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCSHHHHHHHHHHHHHTC
T ss_pred             cccHHHHHHHHHHHHHHhhhccccccccHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhhCccchHHHHHHHHHHHHhcc
Confidence            999999999999999886         77789999999999999999999999999999999999999999999888877


Q ss_pred             HHHHHHHHHhcccCCCCCccccchhHHH
Q 017811          317 VYKKQKEIYKGIFGPRPEPKQKKNWLII  344 (365)
Q Consensus       317 ~~~~~k~~y~kmf~~~~~~~~~~~~~~~  344 (365)
                      ..++ ...|.+.+...|+......+++.
T Consensus       286 ~~~A-~~~~~~al~~~p~~~~~~~~l~~  312 (330)
T 3hym_B          286 FENA-VDYFHTALGLRRDDTFSVTMLGH  312 (330)
T ss_dssp             HHHH-HHHHHTTTTTCSCCHHHHHHHHH
T ss_pred             HHHH-HHHHHHHHccCCCchHHHHHHHH
Confidence            7655 45599999888866544443333

>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B*

Probab=99.35  E-value=7.1e-12  Score=108.32  Aligned_cols=103  Identities=15%  Similarity=0.068  Sum_probs=95.6

Q ss_pred             HHHhhhhhhhhhhhhhHHHHHHHHHHHHHhhccchhhhhhhhHHHHHHHhhchhhhHHHHHHHHhcCHHHHHHHHHHHHh
Q 017811          182 ADRRKMDGNALFKEEKLEEAMQQYEMAIAYMGDDFMFQLFGKYRDMALAVKNPCHLNMAACLLKLKRYEEAIGQCSLVLG  261 (365)
Q Consensus       182 a~~~k~~G~~~~~~~~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~kl~~~~~A~~~~~~aL~  261 (365)
                      +..+...|..++..|+|.+|+..|.+++.+.|.+..                 +++++|.+|..+|+|++|+.++++++.
T Consensus        37 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~-----------------~~~~lg~~~~~~~~~~~A~~~~~~al~   99 (213)
T 1hh8_A           37 SRICFNIGCMYTILKNMTEAEKAFTRSINRDKHLAV-----------------AYFQRGMLYYQTEKYDLAIKDLKEALI   99 (213)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHH-----------------HHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccchH-----------------HHHHHHHHHHHcccHHHHHHHHHHHHH
Confidence            457888999999999999999999999999987633                 499999999999999999999999999


Q ss_pred             CCCCCH----------------HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCcH
Q 017811          262 EDENNV----------------KALFRRGKARAELGQTDAAREDFLKAGKFAPEDK  301 (365)
Q Consensus       262 ~~p~n~----------------ka~~~~g~a~~~l~~~~~A~~~l~~al~l~P~n~  301 (365)
                      +.|.+.                .+++.+|.++..+|++++|+..|++++.++|++.
T Consensus       100 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~  155 (213)
T 1hh8_A          100 QLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATSMKSEPR  155 (213)
T ss_dssp             TTTTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCSGG
T ss_pred             hCCCccHHHHHHhccccCccchHHHHHHHHHHHHccCHHHHHHHHHHHHHcCcccc
Confidence            888877                9999999999999999999999999999999863

>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}

Probab=99.35  E-value=8.3e-12  Score=114.75  Aligned_cols=138  Identities=12%  Similarity=0.027  Sum_probs=105.4

Q ss_pred             HHHhhhhhhhhhhhhhHHHHHHHHHHHHHhhccchhhhhhhhHHHHHHHhhchhhhHHHHHHH----HhcCHHHHHHHHH
Q 017811          182 ADRRKMDGNALFKEEKLEEAMQQYEMAIAYMGDDFMFQLFGKYRDMALAVKNPCHLNMAACLL----KLKRYEEAIGQCS  257 (365)
Q Consensus       182 a~~~k~~G~~~~~~~~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~----kl~~~~~A~~~~~  257 (365)
                      ...+...|..+.+.|++++|+..|++++...|++.                   ..+++.++.    ..|++++|+..++
T Consensus       130 ~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~~p~~~-------------------~~~l~~a~~~l~~~~~~~~eA~~~~~  190 (291)
T 3mkr_A          130 LECMAMTVQILLKLDRLDLARKELKKMQDQDEDAT-------------------LTQLATAWVSLAAGGEKLQDAYYIFQ  190 (291)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCH-------------------HHHHHHHHHHHHHCTTHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCcCcH-------------------HHHHHHHHHHHHhCchHHHHHHHHHH
Confidence            34566788889999999999999999999887642                   234433332    3377888888888


Q ss_pred             HHHhCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCCCccc
Q 017811          258 LVLGEDENNVKALFRRGKARAELGQTDAAREDFLKAGKFAPEDKSIARELRLLAEHEKAVYKKQKEIYKGIFGPRPEPKQ  337 (365)
Q Consensus       258 ~aL~~~p~n~ka~~~~g~a~~~l~~~~~A~~~l~~al~l~P~n~~~~~~l~~l~~~~~~~~~~~k~~y~kmf~~~~~~~~  337 (365)
                      ++++.+|+++.+++.+|.++..+|++++|...|++++.++|+|+.+...+..+....++..+.....+++++...|+...
T Consensus       191 ~~l~~~p~~~~~~~~la~~~~~~g~~~eA~~~l~~al~~~p~~~~~l~~l~~~~~~~g~~~eaa~~~~~~~~~~~P~~~~  270 (291)
T 3mkr_A          191 EMADKCSPTLLLLNGQAACHMAQGRWEAAEGVLQEALDKDSGHPETLINLVVLSQHLGKPPEVTNRYLSQLKDAHRSHPF  270 (291)
T ss_dssp             HHHHHSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCTTCHH
T ss_pred             HHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhCCCChH
Confidence            88888888888888888888888888888888888888888888888888877777776666666777777777776554


Q ss_pred             c
Q 017811          338 K  338 (365)
Q Consensus       338 ~  338 (365)
                      .
T Consensus       271 ~  271 (291)
T 3mkr_A          271 I  271 (291)
T ss_dssp             H
T ss_pred             H
Confidence            4

>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}

Probab=99.35  E-value=2.9e-12  Score=131.58  Aligned_cols=112  Identities=12%  Similarity=0.040  Sum_probs=103.9

Q ss_pred             HhhhhhhhhhhhhhHHHHHHHHHHHHHhhccchhhhhhhhHHHHHHHhhchhhhHHHHHHHHhcCHHHHHHHHHHHHhCC
Q 017811          184 RRKMDGNALFKEEKLEEAMQQYEMAIAYMGDDFMFQLFGKYRDMALAVKNPCHLNMAACLLKLKRYEEAIGQCSLVLGED  263 (365)
Q Consensus       184 ~~k~~G~~~~~~~~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~kl~~~~~A~~~~~~aL~~~  263 (365)
                      .+...|..++..|+|++|+..|++|+++.|.+..                 +++|+|.||.++|+|++ +.+|+++++++
T Consensus       469 a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~-----------------~~~~lg~~~~~~g~~~~-~~~~~~al~~~  530 (681)
T 2pzi_A          469 LVWYRAVAELLTGDYDSATKHFTEVLDTFPGELA-----------------PKLALAATAELAGNTDE-HKFYQTVWSTN  530 (681)
T ss_dssp             HHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCSH-----------------HHHHHHHHHHHHTCCCT-TCHHHHHHHHC
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChH-----------------HHHHHHHHHHHcCChHH-HHHHHHHHHhC
Confidence            4557889999999999999999999999998744                 49999999999999999 99999999999


Q ss_pred             CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHH
Q 017811          264 ENNVKALFRRGKARAELGQTDAAREDFLKAGKFAPEDKSIARELRLLAEH  313 (365)
Q Consensus       264 p~n~ka~~~~g~a~~~l~~~~~A~~~l~~al~l~P~n~~~~~~l~~l~~~  313 (365)
                      |++..+++++|.++..+|++++|+.+|+++++++|++..++..+..+...
T Consensus       531 P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~a~~~~~~~~~~  580 (681)
T 2pzi_A          531 DGVISAAFGLARARSAEGDRVGAVRTLDEVPPTSRHFTTARLTSAVTLLS  580 (681)
T ss_dssp             TTCHHHHHHHHHHHHHTTCHHHHHHHHHTSCTTSTTHHHHHHHHHHHTC-
T ss_pred             CchHHHHHHHHHHHHHcCCHHHHHHHHHhhcccCcccHHHHHHHHHHHHc
Confidence            99999999999999999999999999999999999999999888877533

>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A

Probab=99.34  E-value=1.6e-11  Score=118.10  Aligned_cols=138  Identities=18%  Similarity=0.205  Sum_probs=115.4

Q ss_pred             HHHHHhhhhhhhhhhhhhHHHHHHHHHHHHHhhccchhhhhhhhHHHHHHHhhchhhhHHHHHHHHhcCHHHHHHHHHHH
Q 017811          180 GAADRRKMDGNALFKEEKLEEAMQQYEMAIAYMGDDFMFQLFGKYRDMALAVKNPCHLNMAACLLKLKRYEEAIGQCSLV  259 (365)
Q Consensus       180 ~~a~~~k~~G~~~~~~~~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~kl~~~~~A~~~~~~a  259 (365)
                      ..+..+...|..+++.|+|.+|+..|++++...|.+..                 +++++|.||..+|++++|+..+.++
T Consensus        24 ~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~p~~~~-----------------~~~~l~~~~~~~g~~~~A~~~~~~a   86 (450)
T 2y4t_A           24 ADVEKHLELGKKLLAAGQLADALSQFHAAVDGDPDNYI-----------------AYYRRATVFLAMGKSKAALPDLTKV   86 (450)
T ss_dssp             HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHH-----------------HHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCccHH-----------------HHHHHHHHHHHCCCHHHHHHHHHHH
Confidence            56788999999999999999999999999999887633                 4899999999999999999999999


Q ss_pred             HhCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCcH---HHHHHHHHH------------HHHHHHHHHHHHHH
Q 017811          260 LGEDENNVKALFRRGKARAELGQTDAAREDFLKAGKFAPEDK---SIARELRLL------------AEHEKAVYKKQKEI  324 (365)
Q Consensus       260 L~~~p~n~ka~~~~g~a~~~l~~~~~A~~~l~~al~l~P~n~---~~~~~l~~l------------~~~~~~~~~~~k~~  324 (365)
                      ++++|++..+++.+|.+|..+|++++|+..|++++.++|++.   .+...+..+            ....++.. .....
T Consensus        87 l~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-~A~~~  165 (450)
T 2y4t_A           87 IQLKMDFTAARLQRGHLLLKQGKLDEAEDDFKKVLKSNPSENEEKEAQSQLIKSDEMQRLRSQALNAFGSGDYT-AAIAF  165 (450)
T ss_dssp             HHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCHH-HHHHH
T ss_pred             HhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHcCCHH-HHHHH
Confidence            999999999999999999999999999999999999999988   666555333            33344333 34455


Q ss_pred             HhcccCCCCCc
Q 017811          325 YKGIFGPRPEP  335 (365)
Q Consensus       325 y~kmf~~~~~~  335 (365)
                      |.+++...|..
T Consensus       166 ~~~~~~~~~~~  176 (450)
T 2y4t_A          166 LDKILEVCVWD  176 (450)
T ss_dssp             HHHHHHHCTTC
T ss_pred             HHHHHHhCCCC
Confidence            77776655543

>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1

Probab=99.33  E-value=1.7e-11  Score=97.43  Aligned_cols=100  Identities=17%  Similarity=0.143  Sum_probs=88.8

Q ss_pred             hhhHHHHHHHHhcCHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHH
Q 017811          235 CHLNMAACLLKLKRYEEAIGQCSLVLGEDENNVKALFRRGKARAELGQTDAAREDFLKAGKFAPEDKSIARELRLLAEHE  314 (365)
Q Consensus       235 ~~~nla~~~~kl~~~~~A~~~~~~aL~~~p~n~ka~~~~g~a~~~l~~~~~A~~~l~~al~l~P~n~~~~~~l~~l~~~~  314 (365)
                      .++++|.++++.|++++|+..+++++.++|+++.+++.+|.++..+|++++|+..|+++++++|++..+...++.+....
T Consensus        19 ~~~~~g~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~~la~~~~~~   98 (121)
T 1hxi_A           19 NPMEEGLSMLKLANLAEAALAFEAVCQKEPEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPKDIAVHAALAVSHTNE   98 (121)
T ss_dssp             CHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc
Confidence            47899999999999999999999999999999999999999999999999999999999999999999999999998888


Q ss_pred             HHHHHHHHHHHhcccCCCCCc
Q 017811          315 KAVYKKQKEIYKGIFGPRPEP  335 (365)
Q Consensus       315 ~~~~~~~k~~y~kmf~~~~~~  335 (365)
                      ++..+.. ..|.+.+...|..
T Consensus        99 g~~~~A~-~~~~~al~~~P~~  118 (121)
T 1hxi_A           99 HNANAAL-ASLRAWLLSQPQY  118 (121)
T ss_dssp             HHHHHHH-HHHHHHHC-----
T ss_pred             CCHHHHH-HHHHHHHHhCcCC
Confidence            8877665 4588888777654

>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis}

Probab=99.32  E-value=2.4e-11  Score=104.97  Aligned_cols=152  Identities=12%  Similarity=-0.035  Sum_probs=108.0

Q ss_pred             HhhhhhhhhhhhhhHHHHHHHHHHHHHhhccchhh--------hhh-hhHHH---HHHHh--------hchhhhHHHHHH
Q 017811          184 RRKMDGNALFKEEKLEEAMQQYEMAIAYMGDDFMF--------QLF-GKYRD---MALAV--------KNPCHLNMAACL  243 (365)
Q Consensus       184 ~~k~~G~~~~~~~~y~~A~~~y~~al~~~~~~~~~--------~~~-~~~~~---~~~~~--------~~~~~~nla~~~  243 (365)
                      .+...|..++..|++.+|+..|.+++...|.+...        ... +...+   .....        ...++.++|.++
T Consensus        44 ~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~  123 (225)
T 2vq2_A           44 AWLVRAEIYQYLKVNDKAQESFRQALSIKPDSAEINNNYGWFLCGRLNRPAESMAYFDKALADPTYPTPYIANLNKGICS  123 (225)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCCHHHHHHHHHHHHTSTTCSCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhcCcHHHHHHHHHHHHcCcCCcchHHHHHHHHHHH
Confidence            34455666666666666666666666665543220        001 11111   11111        134689999999


Q ss_pred             HHhcCHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC-CcHHHHHHHHHHHHHHHHHHHHHH
Q 017811          244 LKLKRYEEAIGQCSLVLGEDENNVKALFRRGKARAELGQTDAAREDFLKAGKFAP-EDKSIARELRLLAEHEKAVYKKQK  322 (365)
Q Consensus       244 ~kl~~~~~A~~~~~~aL~~~p~n~ka~~~~g~a~~~l~~~~~A~~~l~~al~l~P-~n~~~~~~l~~l~~~~~~~~~~~k  322 (365)
                      ..+|++++|+..+.++++.+|.+..+++.+|.++..+|++++|+..|++++.++| .+..+...+..+....+... ...
T Consensus       124 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~a~  202 (225)
T 2vq2_A          124 AKQGQFGLAEAYLKRSLAAQPQFPPAFKELARTKMLAGQLGDADYYFKKYQSRVEVLQADDLLLGWKIAKALGNAQ-AAY  202 (225)
T ss_dssp             HHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHH-HHH
T ss_pred             HHcCCHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCcHH-HHH
Confidence            9999999999999999999999999999999999999999999999999999999 99888877777765555443 455


Q ss_pred             HHHhcccCCCCCcc
Q 017811          323 EIYKGIFGPRPEPK  336 (365)
Q Consensus       323 ~~y~kmf~~~~~~~  336 (365)
                      ..++.+....|+..
T Consensus       203 ~~~~~~~~~~p~~~  216 (225)
T 2vq2_A          203 EYEAQLQANFPYSE  216 (225)
T ss_dssp             HHHHHHHHHCTTCH
T ss_pred             HHHHHHHHhCCCCH
Confidence            55666655555443

>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A

Probab=99.32  E-value=1.3e-11  Score=109.31  Aligned_cols=137  Identities=18%  Similarity=0.150  Sum_probs=121.2

Q ss_pred             HHHHhhhhhhhhhhhhhHHHHHHHHHHHHHhhccchhhhhhhhHHHHHHHhhchhhhHHHHHHHHhcCHHHHHHHHHHHH
Q 017811          181 AADRRKMDGNALFKEEKLEEAMQQYEMAIAYMGDDFMFQLFGKYRDMALAVKNPCHLNMAACLLKLKRYEEAIGQCSLVL  260 (365)
Q Consensus       181 ~a~~~k~~G~~~~~~~~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~kl~~~~~A~~~~~~aL  260 (365)
                      .+..+...|..++..|+|.+|+..|.+++...|.+..                 ++.++|.+|...|++++|+..+.+++
T Consensus        36 ~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~~~~~~-----------------~~~~la~~~~~~~~~~~A~~~~~~a~   98 (252)
T 2ho1_A           36 ARDAYIQLGLGYLQRGNTEQAKVPLRKALEIDPSSAD-----------------AHAALAVVFQTEMEPKLADEEYRKAL   98 (252)
T ss_dssp             HHHHHHHHHHHHHHTTCTGGGHHHHHHHHHHCTTCHH-----------------HHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCChHH-----------------HHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence            4788999999999999999999999999999887533                 48999999999999999999999999


Q ss_pred             hCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh--hCCCcHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCCCc
Q 017811          261 GEDENNVKALFRRGKARAELGQTDAAREDFLKAGK--FAPEDKSIARELRLLAEHEKAVYKKQKEIYKGIFGPRPEP  335 (365)
Q Consensus       261 ~~~p~n~ka~~~~g~a~~~l~~~~~A~~~l~~al~--l~P~n~~~~~~l~~l~~~~~~~~~~~k~~y~kmf~~~~~~  335 (365)
                      .++|.+..+++.+|.++..+|++++|+..|++++.  ..|.+..+...+..+....++..+. ...|.+++...+..
T Consensus        99 ~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A-~~~~~~~~~~~~~~  174 (252)
T 2ho1_A           99 ASDSRNARVLNNYGGFLYEQKRYEEAYQRLLEASQDTLYPERSRVFENLGLVSLQMKKPAQA-KEYFEKSLRLNRNQ  174 (252)
T ss_dssp             HHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTCTTCTTHHHHHHHHHHHHHHTTCHHHH-HHHHHHHHHHCSCC
T ss_pred             HHCcCcHHHHHHHHHHHHHHhHHHHHHHHHHHHHhCccCcccHHHHHHHHHHHHHcCCHHHH-HHHHHHHHhcCccc
Confidence            99999999999999999999999999999999999  8899999999998887777666544 44577777665543

>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A

Probab=99.32  E-value=1e-11  Score=116.10  Aligned_cols=133  Identities=13%  Similarity=0.105  Sum_probs=103.1

Q ss_pred             hhhhhhhhhhhhHHHHHHHHHHHHHhhccchhhhhhhhHHHHHHHhhchhhhHHHHHHHHhcCHHHHHHHHHHHHhCCCC
Q 017811          186 KMDGNALFKEEKLEEAMQQYEMAIAYMGDDFMFQLFGKYRDMALAVKNPCHLNMAACLLKLKRYEEAIGQCSLVLGEDEN  265 (365)
Q Consensus       186 k~~G~~~~~~~~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~kl~~~~~A~~~~~~aL~~~p~  265 (365)
                      ...|..+ ..|++.+|+..|.+++...|....               ..++.++|.+|...|++++|+..+++++.++|.
T Consensus       186 ~~~~~~~-~~~~~~~A~~~~~~a~~~~p~~~~---------------~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~  249 (368)
T 1fch_A          186 RILGSLL-SDSLFLEVKELFLAAVRLDPTSID---------------PDVQCGLGVLFNLSGEYDKAVDCFTAALSVRPN  249 (368)
T ss_dssp             CTTHHHH-HHHHHHHHHHHHHHHHHHSTTSCC---------------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT
T ss_pred             HHHHHHh-hcccHHHHHHHHHHHHHhCcCccc---------------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcC
Confidence            3445444 888888888888888888887211               124788888888888888888888888888888


Q ss_pred             CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCCCc
Q 017811          266 NVKALFRRGKARAELGQTDAAREDFLKAGKFAPEDKSIARELRLLAEHEKAVYKKQKEIYKGIFGPRPEP  335 (365)
Q Consensus       266 n~ka~~~~g~a~~~l~~~~~A~~~l~~al~l~P~n~~~~~~l~~l~~~~~~~~~~~k~~y~kmf~~~~~~  335 (365)
                      ++.+++.+|.++..+|++++|+..|++++.++|++..+...++.+....++..++. ..|.+++...|..
T Consensus       250 ~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~-~~~~~al~~~~~~  318 (368)
T 1fch_A          250 DYLLWNKLGATLANGNQSEEAVAAYRRALELQPGYIRSRYNLGISCINLGAHREAV-EHFLEALNMQRKS  318 (368)
T ss_dssp             CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHH-HHHHHHHHHHHTC
T ss_pred             CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCCHHHHH-HHHHHHHHhCCCC
Confidence            88888888888888888888888888888888888888888888877777665544 4467666554443

>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1

Probab=99.32  E-value=1.2e-11  Score=113.28  Aligned_cols=145  Identities=14%  Similarity=0.020  Sum_probs=112.3

Q ss_pred             HHHHhhhhhhhhhhhhhHHHHHHHHHHHHHhhccchhhhhhhhHHHHHHHhhchhhhHHHHHHHHh-cCHHHHHHHHHHH
Q 017811          181 AADRRKMDGNALFKEEKLEEAMQQYEMAIAYMGDDFMFQLFGKYRDMALAVKNPCHLNMAACLLKL-KRYEEAIGQCSLV  259 (365)
Q Consensus       181 ~a~~~k~~G~~~~~~~~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~kl-~~~~~A~~~~~~a  259 (365)
                      .+..+...|+.+...|+|++|+.+|++|+.+.+.....           .....++.|+|.+|... |++++|+.+|+++
T Consensus        76 ~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~-----------~~~a~~~~~lg~~~~~~lg~~~~A~~~~~~A  144 (292)
T 1qqe_A           76 AGNTYVEAYKCFKSGGNSVNAVDSLENAIQIFTHRGQF-----------RRGANFKFELGEILENDLHDYAKAIDCYELA  144 (292)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCH-----------HHHHHHHHHHHHHHHHTTCCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCH-----------HHHHHHHHHHHHHHHHhhcCHHHHHHHHHHH
Confidence            46677888899999999999999999999887653211           01234689999999995 9999999999999


Q ss_pred             HhCCCCC------HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCcHH-------HHHHHHHHHHHHHHHHHHHHHHHh
Q 017811          260 LGEDENN------VKALFRRGKARAELGQTDAAREDFLKAGKFAPEDKS-------IARELRLLAEHEKAVYKKQKEIYK  326 (365)
Q Consensus       260 L~~~p~n------~ka~~~~g~a~~~l~~~~~A~~~l~~al~l~P~n~~-------~~~~l~~l~~~~~~~~~~~k~~y~  326 (365)
                      |++.|.+      ..++.++|.++..+|+|++|+..|++++.+.|++..       +...+..|....++..++. ..|.
T Consensus       145 l~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~-~~~~  223 (292)
T 1qqe_A          145 GEWYAQDQSVALSNKCFIKCADLKALDGQYIEASDIYSKLIKSSMGNRLSQWSLKDYFLKKGLCQLAATDAVAAA-RTLQ  223 (292)
T ss_dssp             HHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSCTTTGGGHHHHHHHHHHHHHHTTCHHHHH-HHHH
T ss_pred             HHHHHhCCChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHHHHHHcCCHHHHH-HHHH
Confidence            9998754      578999999999999999999999999999998654       3456677777666665554 4599


Q ss_pred             cccCCCCCccc
Q 017811          327 GIFGPRPEPKQ  337 (365)
Q Consensus       327 kmf~~~~~~~~  337 (365)
                      +.+...|....
T Consensus       224 ~al~l~p~~~~  234 (292)
T 1qqe_A          224 EGQSEDPNFAD  234 (292)
T ss_dssp             GGGCC------
T ss_pred             HHHhhCCCCCC
Confidence            99887776443

>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis}

Probab=99.32  E-value=2.2e-11  Score=95.13  Aligned_cols=99  Identities=16%  Similarity=0.218  Sum_probs=85.8

Q ss_pred             HHHHHHHHHHHhhccchhhhhhhhHHHHHHHhhchhhhHHHHHHHHhcCHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHH
Q 017811          200 EAMQQYEMAIAYMGDDFMFQLFGKYRDMALAVKNPCHLNMAACLLKLKRYEEAIGQCSLVLGEDENNVKALFRRGKARAE  279 (365)
Q Consensus       200 ~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~kl~~~~~A~~~~~~aL~~~p~n~ka~~~~g~a~~~  279 (365)
                      .|+..|.+++...|.+..                 +++++|.+|+.+|+|++|+..|++++.++|.+..+++.+|.+|..
T Consensus         3 ~a~~~~~~al~~~p~~~~-----------------~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~   65 (115)
T 2kat_A            3 AITERLEAMLAQGTDNML-----------------LRFTLGKTYAEHEQFDAALPHLRAALDFDPTYSVAWKWLGKTLQG   65 (115)
T ss_dssp             CHHHHHHHHHTTTCCCHH-----------------HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhCCCcHH-----------------HHHHHHHHHHHccCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHH
Confidence            588999999999998643                 499999999999999999999999999999999999999999999


Q ss_pred             cCCHHHHHHHHHHHHhhCCC--cHHHHHHHHHHHHHHH
Q 017811          280 LGQTDAAREDFLKAGKFAPE--DKSIARELRLLAEHEK  315 (365)
Q Consensus       280 l~~~~~A~~~l~~al~l~P~--n~~~~~~l~~l~~~~~  315 (365)
                      +|++++|+..|++++.++|.  +......+..+...+.
T Consensus        66 ~g~~~~A~~~~~~al~~~~~~~~~~~~~~l~~~l~~l~  103 (115)
T 2kat_A           66 QGDRAGARQAWESGLAAAQSRGDQQVVKELQVFLRRLA  103 (115)
T ss_dssp             HTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHH
T ss_pred             cCCHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHhc
Confidence            99999999999999999985  4455555544444333

>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A

Probab=99.31  E-value=1.2e-11  Score=115.66  Aligned_cols=134  Identities=15%  Similarity=0.098  Sum_probs=111.1

Q ss_pred             HHhhhhhhhhhhhhhHHHHHHHHHHHHHhhccchhhhhhhhHHHHHHHhhchhhhHHHHHHHHhcCHHHHHHHHHHHHhC
Q 017811          183 DRRKMDGNALFKEEKLEEAMQQYEMAIAYMGDDFMFQLFGKYRDMALAVKNPCHLNMAACLLKLKRYEEAIGQCSLVLGE  262 (365)
Q Consensus       183 ~~~k~~G~~~~~~~~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~kl~~~~~A~~~~~~aL~~  262 (365)
                      ..+...|..++..|+|.+|+..|.+++...|.+..                 +++++|.||..+|++++|+..+.+++.+
T Consensus        65 ~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~-----------------~~~~l~~~~~~~g~~~~A~~~~~~al~~  127 (368)
T 1fch_A           65 PQPFEEGLRRLQEGDLPNAVLLFEAAVQQDPKHME-----------------AWQYLGTTQAENEQELLAISALRRCLEL  127 (368)
T ss_dssp             SSHHHHHHHHHHTTCHHHHHHHHHHHHHSCTTCHH-----------------HHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHH-----------------HHHHHHHHHHHCcCHHHHHHHHHHHHhc
Confidence            44677899999999999999999999999887643                 4899999999999999999999999999


Q ss_pred             CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCcHHHHH----------------HHHHHHHHHHHHHHHHHHHHh
Q 017811          263 DENNVKALFRRGKARAELGQTDAAREDFLKAGKFAPEDKSIAR----------------ELRLLAEHEKAVYKKQKEIYK  326 (365)
Q Consensus       263 ~p~n~ka~~~~g~a~~~l~~~~~A~~~l~~al~l~P~n~~~~~----------------~l~~l~~~~~~~~~~~k~~y~  326 (365)
                      +|.+..+++.+|.++..+|++++|+..|++++.++|++..+..                .+..+. ..++. ......|.
T Consensus       128 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~-~~A~~~~~  205 (368)
T 1fch_A          128 KPDNQTALMALAVSFTNESLQRQACEILRDWLRYTPAYAHLVTPAEEGAGGAGLGPSKRILGSLL-SDSLF-LEVKELFL  205 (368)
T ss_dssp             CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSTTTGGGCC---------------CTTHHHH-HHHHH-HHHHHHHH
T ss_pred             CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHhhhhcccHHHHHHHHHh-hcccH-HHHHHHHH
Confidence            9999999999999999999999999999999999998765543                244443 33333 34455577


Q ss_pred             cccCCCCCc
Q 017811          327 GIFGPRPEP  335 (365)
Q Consensus       327 kmf~~~~~~  335 (365)
                      +++...|..
T Consensus       206 ~a~~~~p~~  214 (368)
T 1fch_A          206 AAVRLDPTS  214 (368)
T ss_dssp             HHHHHSTTS
T ss_pred             HHHHhCcCc
Confidence            777666653

>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1

Probab=99.31  E-value=1.2e-11  Score=110.69  Aligned_cols=137  Identities=12%  Similarity=-0.035  Sum_probs=116.7

Q ss_pred             hhhhhhhhhhhHHHHHHHHHHHHHhhccchhhhhhhhHHHHHHHhhchhhhHHHHHHHHhcCHHHHHHHHHHHHhCCCCC
Q 017811          187 MDGNALFKEEKLEEAMQQYEMAIAYMGDDFMFQLFGKYRDMALAVKNPCHLNMAACLLKLKRYEEAIGQCSLVLGEDENN  266 (365)
Q Consensus       187 ~~G~~~~~~~~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~kl~~~~~A~~~~~~aL~~~p~n  266 (365)
                      ..+..+...++|++|+..|.+++...+.+..             ....+++++|.++..+|++++|+..+.+++.++|.+
T Consensus        10 ~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~-------------~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~   76 (275)
T 1xnf_A           10 VLAVPLQPTLQQEVILARMEQILASRALTDD-------------ERAQLLYERGVLYDSLGLRALARNDFSQALAIRPDM   76 (275)
T ss_dssp             GSCCCCCCCHHHHHHHHHHHHHHTSSCCCHH-------------HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCC
T ss_pred             ceeeccCccchHHHHHHHHHHHHhcccccCc-------------hhHHHHHHHHHHHHHcccHHHHHHHHHHHHHcCCCc
Confidence            4455667789999999999999997543211             123469999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCCCccc
Q 017811          267 VKALFRRGKARAELGQTDAAREDFLKAGKFAPEDKSIARELRLLAEHEKAVYKKQKEIYKGIFGPRPEPKQ  337 (365)
Q Consensus       267 ~ka~~~~g~a~~~l~~~~~A~~~l~~al~l~P~n~~~~~~l~~l~~~~~~~~~~~k~~y~kmf~~~~~~~~  337 (365)
                      +.+++.+|.++..+|++++|+..|++++.++|++..+...++.+....++..+. ...|.+++...|....
T Consensus        77 ~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A-~~~~~~a~~~~~~~~~  146 (275)
T 1xnf_A           77 PEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAHLNRGIALYYGGRDKLA-QDDLLAFYQDDPNDPF  146 (275)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTHHHHHHHHHHHHTTCHHHH-HHHHHHHHHHCTTCHH
T ss_pred             HHHHHHHHHHHHHccCHHHHHHHHHHHHhcCccccHHHHHHHHHHHHhccHHHH-HHHHHHHHHhCCCChH
Confidence            999999999999999999999999999999999999999999998887776654 4558888877776553

>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A*

Probab=99.31  E-value=1e-11  Score=113.80  Aligned_cols=139  Identities=14%  Similarity=0.079  Sum_probs=113.1

Q ss_pred             HHHhhhhhhhhhhhhhHHHHHHHHHHHHHhhccchhhhhhhhHHHHHHHhhchhhhHHHHHHHHhcCHHHHHHHHHHHHh
Q 017811          182 ADRRKMDGNALFKEEKLEEAMQQYEMAIAYMGDDFMFQLFGKYRDMALAVKNPCHLNMAACLLKLKRYEEAIGQCSLVLG  261 (365)
Q Consensus       182 a~~~k~~G~~~~~~~~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~kl~~~~~A~~~~~~aL~  261 (365)
                      ...+...|..++..|++++|+..|++++...|.+..                 +++++|.+++.+|++++|+..+++++.
T Consensus       117 ~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~P~~~~-----------------a~~~la~~~~~~g~~~~A~~~l~~~~~  179 (287)
T 3qou_A          117 EELXAQQAMQLMQESNYTDALPLLXDAWQLSNQNGE-----------------IGLLLAETLIALNRSEDAEAVLXTIPL  179 (287)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTSCHH-----------------HHHHHHHHHHHTTCHHHHHHHHTTSCG
T ss_pred             hhhHHHHHHHHHhCCCHHHHHHHHHHHHHhCCcchh-----------------HHHHHHHHHHHCCCHHHHHHHHHhCch
Confidence            456788999999999999999999999999998754                 489999999999999999999998888


Q ss_pred             CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCCCcccc
Q 017811          262 EDENNVKALFRRGKARAELGQTDAAREDFLKAGKFAPEDKSIARELRLLAEHEKAVYKKQKEIYKGIFGPRPEPKQK  338 (365)
Q Consensus       262 ~~p~n~ka~~~~g~a~~~l~~~~~A~~~l~~al~l~P~n~~~~~~l~~l~~~~~~~~~~~k~~y~kmf~~~~~~~~~  338 (365)
                      .+|++.-.++..+..+...+++++|+..|++++.++|++..++..++.+....++..++... |.+++...|+....
T Consensus       180 ~~p~~~~~~~~~~~~l~~~~~~~~a~~~l~~al~~~P~~~~~~~~la~~l~~~g~~~~A~~~-l~~~l~~~p~~~~~  255 (287)
T 3qou_A          180 QDQDTRYQGLVAQIELLXQAADTPEIQQLQQQVAENPEDAALATQLALQLHQVGRNEEALEL-LFGHLRXDLTAADG  255 (287)
T ss_dssp             GGCSHHHHHHHHHHHHHHHHTSCHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHH-HHHHHHHCTTGGGG
T ss_pred             hhcchHHHHHHHHHHHHhhcccCccHHHHHHHHhcCCccHHHHHHHHHHHHHcccHHHHHHH-HHHHHhcccccccc
Confidence            88877777777777787888888888888888888888888888888777766666655544 77777777765433

>2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A

Probab=99.31  E-value=2e-11  Score=107.38  Aligned_cols=139  Identities=10%  Similarity=-0.045  Sum_probs=115.6

Q ss_pred             HHhhhhhhhhhhhhhHHHHHHHHHHHHHhhccchhhhhhhhHHHHHHHhhchhhhHHHHHHHH-----------------
Q 017811          183 DRRKMDGNALFKEEKLEEAMQQYEMAIAYMGDDFMFQLFGKYRDMALAVKNPCHLNMAACLLK-----------------  245 (365)
Q Consensus       183 ~~~k~~G~~~~~~~~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~k-----------------  245 (365)
                      ..+...|..+++.|+|.+|+..|+++++..|.+...              ..+++++|.|+..                 
T Consensus        42 ~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~P~~~~~--------------~~a~~~~g~~~~~~~~~~~~~~~~~~~~~~  107 (225)
T 2yhc_A           42 QVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNI--------------DYVMYMRGLTNMALDDSALQGFFGVDRSDR  107 (225)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTH--------------HHHHHHHHHHHHHHHC--------------
T ss_pred             HHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCcH--------------HHHHHHHHHHHHhhhhhhhhhhhccchhhc
Confidence            457788999999999999999999999999986432              1247788888876                 


Q ss_pred             -hcCHHHHHHHHHHHHhCCCCCHHHH-----------------HHHHHHHHHcCCHHHHHHHHHHHHhhCCCcH---HHH
Q 017811          246 -LKRYEEAIGQCSLVLGEDENNVKAL-----------------FRRGKARAELGQTDAAREDFLKAGKFAPEDK---SIA  304 (365)
Q Consensus       246 -l~~~~~A~~~~~~aL~~~p~n~ka~-----------------~~~g~a~~~l~~~~~A~~~l~~al~l~P~n~---~~~  304 (365)
                       +|++++|+..++++++.+|++..+.                 +.+|.+|...|+|++|+..|+++++..|+++   .+.
T Consensus       108 ~~~~~~~A~~~~~~~l~~~P~~~~a~~a~~~l~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~  187 (225)
T 2yhc_A          108 DPQQARAAFSDFSKLVRGYPNSQYTTDATKRLVFLKDRLAKYEYSVAEYYTERGAWVAVVNRVEGMLRDYPDTQATRDAL  187 (225)
T ss_dssp             CCHHHHHHHHHHHHHHTTCTTCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTSHHHHHHH
T ss_pred             CcHHHHHHHHHHHHHHHHCcCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHCcCCCccHHHH
Confidence             5799999999999999999987654                 6789999999999999999999999999986   567


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHhcccCCCCCcc
Q 017811          305 RELRLLAEHEKAVYKKQKEIYKGIFGPRPEPK  336 (365)
Q Consensus       305 ~~l~~l~~~~~~~~~~~k~~y~kmf~~~~~~~  336 (365)
                      ..+..+...+++..+.. ..++.+....|+..
T Consensus       188 ~~l~~~~~~~g~~~~A~-~~~~~l~~~~~~~~  218 (225)
T 2yhc_A          188 PLMENAYRQMQMNAQAE-KVAKIIAANSSNTL  218 (225)
T ss_dssp             HHHHHHHHHTTCHHHHH-HHHHHHHHCCSCCC
T ss_pred             HHHHHHHHHcCCcHHHH-HHHHHHHhhCCCch
Confidence            77888887777776654 45777777666544

>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae}

Probab=99.31  E-value=7.1e-12  Score=99.44  Aligned_cols=98  Identities=12%  Similarity=-0.040  Sum_probs=90.1

Q ss_pred             hhhhHHHHHHHHhcCHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHH
Q 017811          234 PCHLNMAACLLKLKRYEEAIGQCSLVLGEDENNVKALFRRGKARAELGQTDAAREDFLKAGKFAPEDKSIARELRLLAEH  313 (365)
Q Consensus       234 ~~~~nla~~~~kl~~~~~A~~~~~~aL~~~p~n~ka~~~~g~a~~~l~~~~~A~~~l~~al~l~P~n~~~~~~l~~l~~~  313 (365)
                      ..+.++|.++++.|+|++|+..|++++.++|+++.+++.+|.++..+|+|++|+.+|++++.++|++..+...++.+...
T Consensus         5 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~   84 (126)
T 3upv_A            5 EEARLEGKEYFTKSDWPNAVKAYTEMIKRAPEDARGYSNRAAALAKLMSFPEAIADCNKAIEKDPNFVRAYIRKATAQIA   84 (126)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHH
Confidence            35899999999999999999999999999999999999999999999999999999999999999999999999999888


Q ss_pred             HHHHHHHHHHHHhcccCCC
Q 017811          314 EKAVYKKQKEIYKGIFGPR  332 (365)
Q Consensus       314 ~~~~~~~~k~~y~kmf~~~  332 (365)
                      .++..+.. ..|.+.+...
T Consensus        85 ~~~~~~A~-~~~~~al~~~  102 (126)
T 3upv_A           85 VKEYASAL-ETLDAARTKD  102 (126)
T ss_dssp             TTCHHHHH-HHHHHHHHHH
T ss_pred             HhCHHHHH-HHHHHHHHhC
Confidence            88776554 4488887766

>2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus}

Probab=99.31  E-value=1e-11  Score=104.88  Aligned_cols=140  Identities=12%  Similarity=0.051  Sum_probs=111.4

Q ss_pred             HHhhhhhhhhhhhhhHHHHHHHHHHHHHhhccchhhhhhhhHHHHHHHhhchhhhHHHHHHHHhcCHHHHHHHHHHHHhC
Q 017811          183 DRRKMDGNALFKEEKLEEAMQQYEMAIAYMGDDFMFQLFGKYRDMALAVKNPCHLNMAACLLKLKRYEEAIGQCSLVLGE  262 (365)
Q Consensus       183 ~~~k~~G~~~~~~~~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~kl~~~~~A~~~~~~aL~~  262 (365)
                      ..+...|..++..|++.+|+..|++++...|.+..                 +++++|.++..+|++++|+..+++++..
T Consensus         7 ~~~~~~a~~~~~~g~~~~A~~~~~~al~~~P~~~~-----------------a~~~la~~~~~~g~~~~A~~~~~~a~~~   69 (176)
T 2r5s_A            7 EQLLKQVSELLQQGEHAQALNVIQTLSDELQSRGD-----------------VKLAKADCLLETKQFELAQELLATIPLE   69 (176)
T ss_dssp             TTHHHHHHHHHHTTCHHHHHHHHHTSCHHHHTSHH-----------------HHHHHHHHHHHTTCHHHHHHHHTTCCGG
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCcHH-----------------HHHHHHHHHHHCCCHHHHHHHHHHhhhc
Confidence            34667889999999999999999999999998744                 4899999999999999999999999999


Q ss_pred             CCCCHHHHHHHHHHHH-HcCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCCCccccchh
Q 017811          263 DENNVKALFRRGKARA-ELGQTDAAREDFLKAGKFAPEDKSIARELRLLAEHEKAVYKKQKEIYKGIFGPRPEPKQKKNW  341 (365)
Q Consensus       263 ~p~n~ka~~~~g~a~~-~l~~~~~A~~~l~~al~l~P~n~~~~~~l~~l~~~~~~~~~~~k~~y~kmf~~~~~~~~~~~~  341 (365)
                      +| ++..+..++.+.. ..+...+|+..|++++.++|++..++..++.+....++..+... .|.+++...|.......|
T Consensus        70 ~p-~~~~~~~~~~~~~~~~~~~~~a~~~~~~al~~~P~~~~~~~~la~~~~~~g~~~~A~~-~~~~~l~~~p~~~~~~a~  147 (176)
T 2r5s_A           70 YQ-DNSYKSLIAKLELHQQAAESPELKRLEQELAANPDNFELACELAVQYNQVGRDEEALE-LLWNILKVNLGAQDGEVK  147 (176)
T ss_dssp             GC-CHHHHHHHHHHHHHHHHTSCHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHH-HHHHHHTTCTTTTTTHHH
T ss_pred             cC-ChHHHHHHHHHHHHhhcccchHHHHHHHHHHhCCCCHHHHHHHHHHHHHcccHHHHHH-HHHHHHHhCcccChHHHH
Confidence            99 8776666664433 33344567899999999999999999999988877777665554 488888888765444333

>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans}

Probab=99.30  E-value=4.5e-12  Score=101.59  Aligned_cols=100  Identities=10%  Similarity=0.037  Sum_probs=84.6

Q ss_pred             hhhhHHHHHHHHhcCHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCcH-------HHHHH
Q 017811          234 PCHLNMAACLLKLKRYEEAIGQCSLVLGEDENNVKALFRRGKARAELGQTDAAREDFLKAGKFAPEDK-------SIARE  306 (365)
Q Consensus       234 ~~~~nla~~~~kl~~~~~A~~~~~~aL~~~p~n~ka~~~~g~a~~~l~~~~~A~~~l~~al~l~P~n~-------~~~~~  306 (365)
                      .++.|+|.++++.|+|++|+.+|+++|+++|+++.+|+++|.+|..+|+|++|+.+|+++++++|++.       .+...
T Consensus         9 ~a~~~lG~~~~~~~~~~~A~~~y~~Al~~~p~~~~~~~nlg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~   88 (127)
T 4gcn_A            9 IAEKDLGNAAYKQKDFEKAHVHYDKAIELDPSNITFYNNKAAVYFEEKKFAECVQFCEKAVEVGRETRADYKLIAKAMSR   88 (127)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHhHHHHHHHhhhHHHHHHHHHHHHHhCcccchhhHHHHHHHHH
Confidence            45889999999999999999999999999999999999999999999999999999999999998764       35556


Q ss_pred             HHHHHHHHHHHHHHHHHHHhcccCCCCC
Q 017811          307 LRLLAEHEKAVYKKQKEIYKGIFGPRPE  334 (365)
Q Consensus       307 l~~l~~~~~~~~~~~k~~y~kmf~~~~~  334 (365)
                      ++.+...++++.++. ..|.+.+...++
T Consensus        89 lg~~~~~~~~~~~A~-~~~~kal~~~~~  115 (127)
T 4gcn_A           89 AGNAFQKQNDLSLAV-QWFHRSLSEFRD  115 (127)
T ss_dssp             HHHHHHHTTCHHHHH-HHHHHHHHHSCC
T ss_pred             HHHHHHHcCCHHHHH-HHHHHHHhhCcC
Confidence            677766666666554 447777765554

>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus}

Probab=99.30  E-value=2.8e-11  Score=100.77  Aligned_cols=120  Identities=16%  Similarity=0.036  Sum_probs=101.5

Q ss_pred             chhhhHHHHHHHHhcCHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHH
Q 017811          233 NPCHLNMAACLLKLKRYEEAIGQCSLVLGEDENNVKALFRRGKARAELGQTDAAREDFLKAGKFAPEDKSIARELRLLAE  312 (365)
Q Consensus       233 ~~~~~nla~~~~kl~~~~~A~~~~~~aL~~~p~n~ka~~~~g~a~~~l~~~~~A~~~l~~al~l~P~n~~~~~~l~~l~~  312 (365)
                      ...++++|.++++.|+|++|+..|++++.++|.++.+|+.+|.+|..+|+|++|+.+|++++.++|++..+...++.+..
T Consensus        11 a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~   90 (164)
T 3sz7_A           11 SDKLKSEGNAAMARKEYSKAIDLYTQALSIAPANPIYLSNRAAAYSASGQHEKAAEDAELATVVDPKYSKAWSRLGLARF   90 (164)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCcCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Confidence            34589999999999999999999999999999999999999999999999999999999999999999999999999988


Q ss_pred             HHHHHHHHHHHHHhcccCCCCCccccchhHHHHHHHHHHHHHH
Q 017811          313 HEKAVYKKQKEIYKGIFGPRPEPKQKKNWLIIFWQLLVSLVLG  355 (365)
Q Consensus       313 ~~~~~~~~~k~~y~kmf~~~~~~~~~~~~~~~~~~~~~~~~~~  355 (365)
                      .++++.+... .|.+.+...|+...  .|....+..+..-+..
T Consensus        91 ~~g~~~~A~~-~~~~al~~~p~~~~--~~~~~~l~~~~~~~~~  130 (164)
T 3sz7_A           91 DMADYKGAKE-AYEKGIEAEGNGGS--DAMKRGLETTKRKIEE  130 (164)
T ss_dssp             HTTCHHHHHH-HHHHHHHHHSSSCC--HHHHHHHHHHHHHHHH
T ss_pred             HccCHHHHHH-HHHHHHHhCCCchH--HHHHHHHHHHHHHHHH
Confidence            8887766554 58888877776554  4444444444444433

>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1

Probab=99.30  E-value=2e-11  Score=111.92  Aligned_cols=148  Identities=12%  Similarity=0.027  Sum_probs=118.0

Q ss_pred             HHHHHHHhhhhhhhhhhhhhHHHHHHHHHHHHHhhccchhhhhhhhHHHHHHHhhchhhhHHHHHHHHhcCHHHHHHHHH
Q 017811          178 RIGAADRRKMDGNALFKEEKLEEAMQQYEMAIAYMGDDFMFQLFGKYRDMALAVKNPCHLNMAACLLKLKRYEEAIGQCS  257 (365)
Q Consensus       178 ~~~~a~~~k~~G~~~~~~~~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~kl~~~~~A~~~~~  257 (365)
                      .-+.+..+...|+.+...|+|++|+..|.+|+.+.+.....           .....+|.|+|.+|.++|+|++|+.+++
T Consensus        33 ~~~A~~~~~~a~~~~~~~g~~~~A~~~~~~al~~~~~~~~~-----------~~~a~~~~~lg~~~~~~g~~~~A~~~~~  101 (292)
T 1qqe_A           33 FEEAADLCVQAATIYRLRKELNLAGDSFLKAADYQKKAGNE-----------DEAGNTYVEAYKCFKSGGNSVNAVDSLE  101 (292)
T ss_dssp             HHHHHHHHHHHHHHHHHTTCTHHHHHHHHHHHHHHHHTTCH-----------HHHHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCH-----------HHHHHHHHHHHHHHHHCCCHHHHHHHHH
Confidence            44455666777888889999999999999999987542110           0124469999999999999999999999


Q ss_pred             HHHhCCCCC------HHHHHHHHHHHHHc-CCHHHHHHHHHHHHhhCCCc------HHHHHHHHHHHHHHHHHHHHHHHH
Q 017811          258 LVLGEDENN------VKALFRRGKARAEL-GQTDAAREDFLKAGKFAPED------KSIARELRLLAEHEKAVYKKQKEI  324 (365)
Q Consensus       258 ~aL~~~p~n------~ka~~~~g~a~~~l-~~~~~A~~~l~~al~l~P~n------~~~~~~l~~l~~~~~~~~~~~k~~  324 (365)
                      +++.+.|..      ..++.++|.+|... |++++|+..|++|+.+.|.+      ..+...++.+...++++.++. ..
T Consensus       102 ~Al~l~~~~g~~~~~a~~~~~lg~~~~~~lg~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~-~~  180 (292)
T 1qqe_A          102 NAIQIFTHRGQFRRGANFKFELGEILENDLHDYAKAIDCYELAGEWYAQDQSVALSNKCFIKCADLKALDGQYIEAS-DI  180 (292)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHH-HH
T ss_pred             HHHHHHHHcCCHHHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHhCCHHHHH-HH
Confidence            999988754      57999999999995 99999999999999998854      355667788877777776555 55


Q ss_pred             HhcccCCCCCccc
Q 017811          325 YKGIFGPRPEPKQ  337 (365)
Q Consensus       325 y~kmf~~~~~~~~  337 (365)
                      |.+.+...+....
T Consensus       181 ~~~al~~~~~~~~  193 (292)
T 1qqe_A          181 YSKLIKSSMGNRL  193 (292)
T ss_dssp             HHHHHHTTSSCTT
T ss_pred             HHHHHHHHhcCCc
Confidence            8888877766544

>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae}

Probab=99.29  E-value=2.5e-11  Score=118.32  Aligned_cols=107  Identities=21%  Similarity=0.267  Sum_probs=99.7

Q ss_pred             HHHHHHHhhhhhhhhhhhhhHHHHHHHHHHHHHhhccchhhhhhhhHHHHHHHhhchhhhHHHHHHHHhcCHHHHHHHHH
Q 017811          178 RIGAADRRKMDGNALFKEEKLEEAMQQYEMAIAYMGDDFMFQLFGKYRDMALAVKNPCHLNMAACLLKLKRYEEAIGQCS  257 (365)
Q Consensus       178 ~~~~a~~~k~~G~~~~~~~~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~kl~~~~~A~~~~~  257 (365)
                      +.+.+..+...|+.+++.|+|.+|+..|++++...|+ .                 .+++++|.||+++|+|++|+..|+
T Consensus         2 ~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~-~-----------------~~~~~la~~~~~~g~~~~A~~~~~   63 (514)
T 2gw1_A            2 KDKYALALKDKGNQFFRNKKYDDAIKYYNWALELKED-P-----------------VFYSNLSACYVSVGDLKKVVEMST   63 (514)
T ss_dssp             HHHHHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHCCC-H-----------------HHHHHHHHHHHHHTCHHHHHHHHH
T ss_pred             cchhHHHHHHHHHHHHHhccHHHHHHHHHHHHhcCcc-H-----------------HHHHhHHHHHHHHhhHHHHHHHHH
Confidence            4578899999999999999999999999999999874 2                 249999999999999999999999


Q ss_pred             HHHhCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCcHH
Q 017811          258 LVLGEDENNVKALFRRGKARAELGQTDAAREDFLKAGKFAPEDKS  302 (365)
Q Consensus       258 ~aL~~~p~n~ka~~~~g~a~~~l~~~~~A~~~l~~al~l~P~n~~  302 (365)
                      ++++++|+++.+++.+|.++..+|++++|+..|++++.++|.+..
T Consensus        64 ~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~  108 (514)
T 2gw1_A           64 KALELKPDYSKVLLRRASANEGLGKFADAMFDLSVLSLNGDFNDA  108 (514)
T ss_dssp             HHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSSSCCGG
T ss_pred             HHhccChHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCccc
Confidence            999999999999999999999999999999999999999996543

>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens}

Probab=99.29  E-value=3.3e-11  Score=110.39  Aligned_cols=152  Identities=9%  Similarity=-0.002  Sum_probs=110.7

Q ss_pred             HhhhhhhhhhhhhhHHHHHHHHHHHHHhhccchhhhh--------hhhHHHH---HH------HhhchhhhHHHHHHHHh
Q 017811          184 RRKMDGNALFKEEKLEEAMQQYEMAIAYMGDDFMFQL--------FGKYRDM---AL------AVKNPCHLNMAACLLKL  246 (365)
Q Consensus       184 ~~k~~G~~~~~~~~y~~A~~~y~~al~~~~~~~~~~~--------~~~~~~~---~~------~~~~~~~~nla~~~~kl  246 (365)
                      .+...|..++..|+|.+|+..|++++...|.+...-.        .+...+.   ..      .-...+++++|.++..+
T Consensus        24 ~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~  103 (330)
T 3hym_B           24 VVVSLAERHYYNCDFKMCYKLTSVVMEKDPFHASCLPVHIGTLVELNKANELFYLSHKLVDLYPSNPVSWFAVGCYYLMV  103 (330)
T ss_dssp             THHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTTHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTHHHHHHHHHHHHS
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCChhhHHHHHHHHHHhhhHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHh
Confidence            3455666777777777777777777777665432110        0000000   00      01134688899999999


Q ss_pred             c-CHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHHHHHHHHHHHHH
Q 017811          247 K-RYEEAIGQCSLVLGEDENNVKALFRRGKARAELGQTDAAREDFLKAGKFAPEDKSIARELRLLAEHEKAVYKKQKEIY  325 (365)
Q Consensus       247 ~-~~~~A~~~~~~aL~~~p~n~ka~~~~g~a~~~l~~~~~A~~~l~~al~l~P~n~~~~~~l~~l~~~~~~~~~~~k~~y  325 (365)
                      | ++++|+..+.+++.++|.+..+++.+|.++..+|++++|+..|++++.+.|++..+...+..+....++..+. ...|
T Consensus       104 ~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A-~~~~  182 (330)
T 3hym_B          104 GHKNEHARRYLSKATTLEKTYGPAWIAYGHSFAVESEHDQAMAAYFTAAQLMKGCHLPMLYIGLEYGLTNNSKLA-ERFF  182 (330)
T ss_dssp             CSCHHHHHHHHHHHHTTCTTCTHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCSHHHHHHHHHHHHTTCHHHH-HHHH
T ss_pred             hhhHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHhhHHHH-HHHH
Confidence            9 8999999999999999999999999999999999999999999999999999888888888887777666544 4558


Q ss_pred             hcccCCCCCcc
Q 017811          326 KGIFGPRPEPK  336 (365)
Q Consensus       326 ~kmf~~~~~~~  336 (365)
                      .+++...|...
T Consensus       183 ~~al~~~~~~~  193 (330)
T 3hym_B          183 SQALSIAPEDP  193 (330)
T ss_dssp             HHHHTTCTTCH
T ss_pred             HHHHHhCCCCh
Confidence            88888777543

>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A

Probab=99.25  E-value=6.8e-11  Score=108.12  Aligned_cols=119  Identities=16%  Similarity=0.129  Sum_probs=83.4

Q ss_pred             HhhhhhhhhhhhhhHHHHHHHHHHHHHhhccchhhhhhhhHHHHHHHhhchhhhHHHHHHHHhcCHHHHHHHHHHHHhCC
Q 017811          184 RRKMDGNALFKEEKLEEAMQQYEMAIAYMGDDFMFQLFGKYRDMALAVKNPCHLNMAACLLKLKRYEEAIGQCSLVLGED  263 (365)
Q Consensus       184 ~~k~~G~~~~~~~~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~kl~~~~~A~~~~~~aL~~~  263 (365)
                      .+...|..++..|++++|+..|.+++...|.+..                 ++.++|.++..+|++++|+..+++++..+
T Consensus       174 ~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~-----------------~~~~l~~~~~~~~~~~~A~~~~~~a~~~~  236 (327)
T 3cv0_A          174 LHASLGVLYNLSNNYDSAAANLRRAVELRPDDAQ-----------------LWNKLGATLANGNRPQEALDAYNRALDIN  236 (327)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHH-----------------HHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred             HHHHHHHHHHHhccHHHHHHHHHHHHHhCCCcHH-----------------HHHHHHHHHHHcCCHHHHHHHHHHHHHcC
Confidence            4455666777777777777777777777665422                 36777777777777777777777777777


Q ss_pred             CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC------------cHHHHHHHHHHHHHHHHHHH
Q 017811          264 ENNVKALFRRGKARAELGQTDAAREDFLKAGKFAPE------------DKSIARELRLLAEHEKAVYK  319 (365)
Q Consensus       264 p~n~ka~~~~g~a~~~l~~~~~A~~~l~~al~l~P~------------n~~~~~~l~~l~~~~~~~~~  319 (365)
                      |.+..+++.+|.++..+|++++|+..|++++.++|+            +..+...+..+....++..+
T Consensus       237 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~  304 (327)
T 3cv0_A          237 PGYVRVMYNMAVSYSNMSQYDLAAKQLVRAIYMQVGGTTPTGEASREATRSMWDFFRMLLNVMNRPDL  304 (327)
T ss_dssp             TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTSCC-----CCTHHHHHHHHHHHHHHHTTCHHH
T ss_pred             CCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCccccccccchhhcCHHHHHHHHHHHHhcCCHHH
Confidence            777777777777777777777777777777777777            56666666666665555443

>1w26_A Trigger factor, TF; chaperone, protein folding, ribosome associated protein, nascent chain, cell division, isomerase; 2.7A {Escherichia coli} SCOP: a.223.1.1 d.241.2.1 d.26.1.1 PDB: 2vrh_A 1w2b_5

Probab=99.25  E-value=1.5e-11  Score=119.03  Aligned_cols=89  Identities=15%  Similarity=0.241  Sum_probs=79.2

Q ss_pred             CCCCCCCCEEEEEEEEEEcCCCeeeccCcCCCCcceeecCCCCchhhhHHHHHhcCCcCcEEEEEeccccccCCCCCCCC
Q 017811           64 GQKPSKYSTCFLHYRAWAESTRHKFDDTWLEQQPLEMVLGKEKKEMTGLAIGVSSMKAGEHALLHVGWELGYGKEGSFSF  143 (365)
Q Consensus        64 g~~p~~g~~v~v~y~~~~~~~g~~fd~s~~~~~p~~f~lg~~~~~i~g~e~~l~~Mk~GE~~~~~i~~~~~yg~~g~~~~  143 (365)
                      +..+..||.|+|||+++. + |++||++.  +.|+.|.+|.| ++|+||+.+|.+|++|++..|.||+..+||..+.   
T Consensus       155 ~~~~~~gD~V~i~y~g~~-d-G~~fd~~~--~~~~~~~lG~g-~~ipgfee~L~G~k~Ge~~~v~v~~~~~yg~~~l---  226 (432)
T 1w26_A          155 DGAVEAEDRVTIDFTGSV-D-GEEFEGGK--ASDFVLAMGQG-RMIPGFEDGIKGHKAGEEFTIDVTFPEEYHAENL---  226 (432)
T ss_dssp             SSCCCTTCEEEECEEEES-S-SCBCSSCC--CSSEEEETTSC-CSCTTHHHHSSSCCSSCEEEEEEECCTTCSCTTT---
T ss_pred             CCCCCCCCEEEEEEEEee-C-CeEccCCC--ccceEEEeCCC-CcchHHHHHhCCCCCCCEEEEEECCchhhCCCCC---
Confidence            446889999999999994 5 99999986  67999999999 8999999999999999999999999999997542   


Q ss_pred             CCCCCCCcEEEEEEEEeeecC
Q 017811          144 PNVSPMADLVYEVVLIGFDET  164 (365)
Q Consensus       144 ~~ip~~~~l~~~iel~~~~~~  164 (365)
                          +|.++.|.|+++++...
T Consensus       227 ----ag~~~~F~V~v~~v~~~  243 (432)
T 1w26_A          227 ----KGKAAKFAINLKKVEER  243 (432)
T ss_dssp             ----SSCEEEEEEECCEECCE
T ss_pred             ----CCceEEEEEEEEEEecc
Confidence                67899999999988754

>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A*

Probab=99.25  E-value=2.3e-11  Score=121.81  Aligned_cols=125  Identities=19%  Similarity=0.115  Sum_probs=95.2

Q ss_pred             hhhHHHHHHHHHHHHHhhccchhhhhhhhHHHHHHHhhchhhhHHHHHHHHhcCHHHHHHHHHHHHhCCCCCHHHHHHHH
Q 017811          195 EEKLEEAMQQYEMAIAYMGDDFMFQLFGKYRDMALAVKNPCHLNMAACLLKLKRYEEAIGQCSLVLGEDENNVKALFRRG  274 (365)
Q Consensus       195 ~~~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~kl~~~~~A~~~~~~aL~~~p~n~ka~~~~g  274 (365)
                      .|++++|+..|++++...|.+..                 +++++|.+|..+|+|++|+..++++++++|++..+++.+|
T Consensus         2 ~g~~~~A~~~~~~al~~~p~~~~-----------------~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg   64 (568)
T 2vsy_A            2 TADGPRELLQLRAAVRHRPQDFV-----------------AWLMLADAELGMGDTTAGEMAVQRGLALHPGHPEAVARLG   64 (568)
T ss_dssp             -------------------CCHH-----------------HHHHHHHHHHHHTCHHHHHHHHHHHHTTSTTCHHHHHHHH
T ss_pred             CccHHHHHHHHHHHHHhCCCCHH-----------------HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHH
Confidence            47899999999999999988643                 4999999999999999999999999999999999999999


Q ss_pred             HHHHHcCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCCCccc
Q 017811          275 KARAELGQTDAAREDFLKAGKFAPEDKSIARELRLLAEHEKAVYKKQKEIYKGIFGPRPEPKQ  337 (365)
Q Consensus       275 ~a~~~l~~~~~A~~~l~~al~l~P~n~~~~~~l~~l~~~~~~~~~~~k~~y~kmf~~~~~~~~  337 (365)
                      .+|..+|++++|+..|+++++++|++..+...++.+....++..++. ..|.+.+...|+...
T Consensus        65 ~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~-~~~~~al~~~p~~~~  126 (568)
T 2vsy_A           65 RVRWTQQRHAEAAVLLQQASDAAPEHPGIALWLGHALEDAGQAEAAA-AAYTRAHQLLPEEPY  126 (568)
T ss_dssp             HHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHH-HHHHHHHHHCTTCHH
T ss_pred             HHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHH-HHHHHHHHhCCCCHH
Confidence            99999999999999999999999999999999999988887776554 558888877775543

>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A

Probab=99.24  E-value=3.8e-12  Score=119.47  Aligned_cols=127  Identities=13%  Similarity=0.079  Sum_probs=111.4

Q ss_pred             hhhhHHHHHHHHHHHHHhhccchhhhhhhhHHHHHHHhhchhhhHHHHHHHHhcCHHHHHHHHHHHHhCCCCC-------
Q 017811          194 KEEKLEEAMQQYEMAIAYMGDDFMFQLFGKYRDMALAVKNPCHLNMAACLLKLKRYEEAIGQCSLVLGEDENN-------  266 (365)
Q Consensus       194 ~~~~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~kl~~~~~A~~~~~~aL~~~p~n-------  266 (365)
                      ..++|.+|+..|.+++...|..                 ..++.++|.+|+++|+|++|+..|++++.++|.+       
T Consensus       125 ~L~~~~~A~~~~~~a~~~~p~~-----------------a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~  187 (336)
T 1p5q_A          125 HLKSFEKAKESWEMNSEEKLEQ-----------------STIVKERGTVYFKEGKYKQALLQYKKIVSWLEYESSFSNEE  187 (336)
T ss_dssp             EEEEEECCCCGGGCCHHHHHHH-----------------HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCCCCCSHH
T ss_pred             EEeecccccchhcCCHHHHHHH-----------------HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHhhccccCChHH
Confidence            4567778888888888776653                 3359999999999999999999999999999999       


Q ss_pred             --------HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCCCcccc
Q 017811          267 --------VKALFRRGKARAELGQTDAAREDFLKAGKFAPEDKSIARELRLLAEHEKAVYKKQKEIYKGIFGPRPEPKQK  338 (365)
Q Consensus       267 --------~ka~~~~g~a~~~l~~~~~A~~~l~~al~l~P~n~~~~~~l~~l~~~~~~~~~~~k~~y~kmf~~~~~~~~~  338 (365)
                              ..+|+++|.+|..+|+|++|+..|++++.++|++..+...++.+...++++.++. ..|.+.+...|.....
T Consensus       188 ~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~-~~~~~al~l~P~~~~a  266 (336)
T 1p5q_A          188 AQKAQALRLASHLNLAMCHLKLQAFSAAIESCNKALELDSNNEKGLSRRGEAHLAVNDFELAR-ADFQKVLQLYPNNKAA  266 (336)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHH-HHHHHHHHHCSSCHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCCHHHHH-HHHHHHHHHCCCCHHH
Confidence                    7999999999999999999999999999999999999999999988888776654 5599998888876654

>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A

Probab=99.21  E-value=1.6e-10  Score=90.87  Aligned_cols=101  Identities=26%  Similarity=0.325  Sum_probs=92.7

Q ss_pred             HHhhhhhhhhhhhhhHHHHHHHHHHHHHhhccchhhhhhhhHHHHHHHhhchhhhHHHHHHHHhcCHHHHHHHHHHHHhC
Q 017811          183 DRRKMDGNALFKEEKLEEAMQQYEMAIAYMGDDFMFQLFGKYRDMALAVKNPCHLNMAACLLKLKRYEEAIGQCSLVLGE  262 (365)
Q Consensus       183 ~~~k~~G~~~~~~~~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~kl~~~~~A~~~~~~aL~~  262 (365)
                      ..+...|..++..|++.+|+..|.+++...|.+..                 +++++|.++...|++++|+..+.+++..
T Consensus        36 ~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~-----------------~~~~l~~~~~~~~~~~~A~~~~~~~~~~   98 (136)
T 2fo7_A           36 EAWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAE-----------------AWYNLGNAYYKQGDYDEAIEYYQKALEL   98 (136)
T ss_dssp             HHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHH-----------------HHHHHHHHHHTTTCHHHHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHhcCHHHHHHHHHHHHHHCCCchH-----------------HHHHHHHHHHHhcCHHHHHHHHHHHHHh
Confidence            34566888999999999999999999999876532                 4889999999999999999999999999


Q ss_pred             CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCc
Q 017811          263 DENNVKALFRRGKARAELGQTDAAREDFLKAGKFAPED  300 (365)
Q Consensus       263 ~p~n~ka~~~~g~a~~~l~~~~~A~~~l~~al~l~P~n  300 (365)
                      .|.+..+++.+|.++..+|++++|...|++++.++|++
T Consensus        99 ~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~  136 (136)
T 2fo7_A           99 DPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPRS  136 (136)
T ss_dssp             CTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHSTTC
T ss_pred             CCCChHHHHHHHHHHHHHccHHHHHHHHHHHHccCCCC
Confidence            99999999999999999999999999999999999864

>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A

Probab=99.21  E-value=7.8e-11  Score=107.70  Aligned_cols=126  Identities=9%  Similarity=0.032  Sum_probs=113.2

Q ss_pred             hhhhhhhHHHHHHHHHHHHHhhccchhhhhhhhHHHHHHHhhchhhhHHHHHHHHhcCHHHHHHHHHHHHhCCCCCHHHH
Q 017811          191 ALFKEEKLEEAMQQYEMAIAYMGDDFMFQLFGKYRDMALAVKNPCHLNMAACLLKLKRYEEAIGQCSLVLGEDENNVKAL  270 (365)
Q Consensus       191 ~~~~~~~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~kl~~~~~A~~~~~~aL~~~p~n~ka~  270 (365)
                      .+...|++.+|+..|.+++...|.+..                 ++.++|.++..+|++++|+..+.+++..+|.+..++
T Consensus       147 ~~~~~~~~~~A~~~~~~~~~~~~~~~~-----------------~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~  209 (327)
T 3cv0_A          147 FFAAPNEYRECRTLLHAALEMNPNDAQ-----------------LHASLGVLYNLSNNYDSAAANLRRAVELRPDDAQLW  209 (327)
T ss_dssp             CTTSHHHHHHHHHHHHHHHHHSTTCHH-----------------HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHH
T ss_pred             HHHHcccHHHHHHHHHHHHhhCCCCHH-----------------HHHHHHHHHHHhccHHHHHHHHHHHHHhCCCcHHHH
Confidence            588999999999999999999887533                 489999999999999999999999999999999999


Q ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCCC
Q 017811          271 FRRGKARAELGQTDAAREDFLKAGKFAPEDKSIARELRLLAEHEKAVYKKQKEIYKGIFGPRPE  334 (365)
Q Consensus       271 ~~~g~a~~~l~~~~~A~~~l~~al~l~P~n~~~~~~l~~l~~~~~~~~~~~k~~y~kmf~~~~~  334 (365)
                      +.+|.++..+|++++|+..|++++.++|++..+...+..+....++..++. ..|.+++...|.
T Consensus       210 ~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~g~~~~A~-~~~~~a~~~~~~  272 (327)
T 3cv0_A          210 NKLGATLANGNRPQEALDAYNRALDINPGYVRVMYNMAVSYSNMSQYDLAA-KQLVRAIYMQVG  272 (327)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHH-HHHHHHHHHHTT
T ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhccHHHHH-HHHHHHHHhCCc
Confidence            999999999999999999999999999999999999999988777766554 447777666555

>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B*

Probab=99.20  E-value=7.2e-11  Score=94.43  Aligned_cols=100  Identities=11%  Similarity=-0.007  Sum_probs=90.9

Q ss_pred             hhhhHHHHHHHHhcCHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHH
Q 017811          234 PCHLNMAACLLKLKRYEEAIGQCSLVLGEDENNVKALFRRGKARAELGQTDAAREDFLKAGKFAPEDKSIARELRLLAEH  313 (365)
Q Consensus       234 ~~~~nla~~~~kl~~~~~A~~~~~~aL~~~p~n~ka~~~~g~a~~~l~~~~~A~~~l~~al~l~P~n~~~~~~l~~l~~~  313 (365)
                      ..++++|.+++..|+|++|+..+.+++.++|.++.+++.+|.++..+|+|++|+..|++++.++|++..+...++.+...
T Consensus        10 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~   89 (137)
T 3q49_B           10 QELKEQGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAHFFLGQCQLE   89 (137)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhCcHHHHHHHHHHHHhhCcCcHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCchhHHHHHHHHHHHHH
Confidence            45899999999999999999999999999999999999999999999999999999999999999999999999999888


Q ss_pred             HHHHHHHHHHHHhcccCCCCC
Q 017811          314 EKAVYKKQKEIYKGIFGPRPE  334 (365)
Q Consensus       314 ~~~~~~~~k~~y~kmf~~~~~  334 (365)
                      .++..+.. ..|.+.+...|+
T Consensus        90 ~~~~~~A~-~~~~~a~~~~p~  109 (137)
T 3q49_B           90 MESYDEAI-ANLQRAYSLAKE  109 (137)
T ss_dssp             TTCHHHHH-HHHHHHHHHHHH
T ss_pred             HhhHHHHH-HHHHHHHHHChh
Confidence            87776554 458877766554

>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A

Probab=99.19  E-value=1.1e-10  Score=104.01  Aligned_cols=141  Identities=16%  Similarity=0.109  Sum_probs=113.9

Q ss_pred             HHHHHhhhhhhhhhhhhhHHHHHHHHHHHHHhhccchhhhhhhhHHHHHHHhhchhhhHHHHHHHHhcCHHHHHHHHHHH
Q 017811          180 GAADRRKMDGNALFKEEKLEEAMQQYEMAIAYMGDDFMFQLFGKYRDMALAVKNPCHLNMAACLLKLKRYEEAIGQCSLV  259 (365)
Q Consensus       180 ~~a~~~k~~G~~~~~~~~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~kl~~~~~A~~~~~~a  259 (365)
                      ..+..+...|..++..|+|.+|+..|.+++.+.......   .      ......++.++|.+|..+|++++|+.++.++
T Consensus        41 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~---~------~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a  111 (283)
T 3edt_B           41 DVATMLNILALVYRDQNKYKEAAHLLNDALAIREKTLGK---D------HPAVAATLNNLAVLYGKRGKYKEAEPLCKRA  111 (283)
T ss_dssp             HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCT---T------CHHHHHHHHHHHHHHHTTTCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHcCC---c------chHHHHHHHHHHHHHHHhccHHHHHHHHHHH
Confidence            456678889999999999999999999999986211000   0      0112446999999999999999999999999


Q ss_pred             HhC--------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh--------CCCcHHHHHHHHHHHHHHHHHHHHHHH
Q 017811          260 LGE--------DENNVKALFRRGKARAELGQTDAAREDFLKAGKF--------APEDKSIARELRLLAEHEKAVYKKQKE  323 (365)
Q Consensus       260 L~~--------~p~n~ka~~~~g~a~~~l~~~~~A~~~l~~al~l--------~P~n~~~~~~l~~l~~~~~~~~~~~k~  323 (365)
                      +.+        +|....+++.+|.++..+|++++|+..|++++.+        +|....+...++.+....++..++. .
T Consensus       112 l~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~-~  190 (283)
T 3edt_B          112 LEIREKVLGKFHPDVAKQLNNLALLCQNQGKAEEVEYYYRRALEIYATRLGPDDPNVAKTKNNLASCYLKQGKYQDAE-T  190 (283)
T ss_dssp             HHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHHHHTCHHHHH-H
T ss_pred             HHHHHHHcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCHHHHH-H
Confidence            988        5778899999999999999999999999999999        7777788888888887777665544 3


Q ss_pred             HHhcccC
Q 017811          324 IYKGIFG  330 (365)
Q Consensus       324 ~y~kmf~  330 (365)
                      .|.+++.
T Consensus       191 ~~~~~l~  197 (283)
T 3edt_B          191 LYKEILT  197 (283)
T ss_dssp             HHHHHHH
T ss_pred             HHHHHHH
Confidence            3555543

>2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae}

Probab=99.19  E-value=1.6e-10  Score=88.73  Aligned_cols=81  Identities=15%  Similarity=0.146  Sum_probs=72.6

Q ss_pred             hhhhHHHHHHHHhcCHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCc------HHHHHHH
Q 017811          234 PCHLNMAACLLKLKRYEEAIGQCSLVLGEDENNVKALFRRGKARAELGQTDAAREDFLKAGKFAPED------KSIAREL  307 (365)
Q Consensus       234 ~~~~nla~~~~kl~~~~~A~~~~~~aL~~~p~n~ka~~~~g~a~~~l~~~~~A~~~l~~al~l~P~n------~~~~~~l  307 (365)
                      .+++++|.+++..|+|++|+..+++++.++|.++.+++++|.++..+|+|++|+..|++++.++|++      ..+...+
T Consensus         5 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~   84 (111)
T 2l6j_A            5 EKQKEQGNSLFKQGLYREAVHCYDQLITAQPQNPVGYSNKAMALIKLGEYTQAIQMCQQGLRYTSTAEHVAIRSKLQYRL   84 (111)
T ss_dssp             HHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSCSSTTSHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCccHHHHHHHHHHHH
Confidence            3589999999999999999999999999999999999999999999999999999999999999998      5555555


Q ss_pred             HHHHHHH
Q 017811          308 RLLAEHE  314 (365)
Q Consensus       308 ~~l~~~~  314 (365)
                      +.+....
T Consensus        85 ~~~~~~~   91 (111)
T 2l6j_A           85 ELAQGAV   91 (111)
T ss_dssp             HHHHHHH
T ss_pred             HHHHHHH
Confidence            5554433

>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}

Probab=99.19  E-value=2.1e-10  Score=105.22  Aligned_cols=97  Identities=18%  Similarity=0.164  Sum_probs=88.6

Q ss_pred             hhhhhHHHHHHHHHHHHHhhccchhhhhhhhHHHHHHHhhchhhhHHHHHHHHhcCHHHHHHHHHHHHhCCCCCHHHHHH
Q 017811          193 FKEEKLEEAMQQYEMAIAYMGDDFMFQLFGKYRDMALAVKNPCHLNMAACLLKLKRYEEAIGQCSLVLGEDENNVKALFR  272 (365)
Q Consensus       193 ~~~~~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~kl~~~~~A~~~~~~aL~~~p~n~ka~~~  272 (365)
                      ...|++++|+..|++++...|.+..                 +++++|.|++++|+|++|+..++++|.++|+++.++++
T Consensus       177 ~~~~~~~eA~~~~~~~l~~~p~~~~-----------------~~~~la~~~~~~g~~~eA~~~l~~al~~~p~~~~~l~~  239 (291)
T 3mkr_A          177 AGGEKLQDAYYIFQEMADKCSPTLL-----------------LLNGQAACHMAQGRWEAAEGVLQEALDKDSGHPETLIN  239 (291)
T ss_dssp             HCTTHHHHHHHHHHHHHHHSCCCHH-----------------HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHH
T ss_pred             hCchHHHHHHHHHHHHHHhCCCcHH-----------------HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHH
Confidence            3458999999999999999988643                 49999999999999999999999999999999999999


Q ss_pred             HHHHHHHcCCHHH-HHHHHHHHHhhCCCcHHHHHH
Q 017811          273 RGKARAELGQTDA-AREDFLKAGKFAPEDKSIARE  306 (365)
Q Consensus       273 ~g~a~~~l~~~~~-A~~~l~~al~l~P~n~~~~~~  306 (365)
                      +|.++..+|++++ |...++++++++|+++.+...
T Consensus       240 l~~~~~~~g~~~eaa~~~~~~~~~~~P~~~~~~d~  274 (291)
T 3mkr_A          240 LVVLSQHLGKPPEVTNRYLSQLKDAHRSHPFIKEY  274 (291)
T ss_dssp             HHHHHHHTTCCHHHHHHHHHHHHHHCTTCHHHHHH
T ss_pred             HHHHHHHcCCCHHHHHHHHHHHHHhCCCChHHHHH
Confidence            9999999999987 568889999999999987653

>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A

Probab=99.19  E-value=1.2e-10  Score=114.37  Aligned_cols=158  Identities=11%  Similarity=-0.002  Sum_probs=117.4

Q ss_pred             HHHHHHHhhhhhhhhhhhhhHHHHHHHHHHHHHhhccchhh-hh----------hhhHHHHHH---H---hhchhhhHHH
Q 017811          178 RIGAADRRKMDGNALFKEEKLEEAMQQYEMAIAYMGDDFMF-QL----------FGKYRDMAL---A---VKNPCHLNMA  240 (365)
Q Consensus       178 ~~~~a~~~k~~G~~~~~~~~y~~A~~~y~~al~~~~~~~~~-~~----------~~~~~~~~~---~---~~~~~~~nla  240 (365)
                      ....+..+...|..++..|++.+|+..|.+++...|. ... ..          .++-.....   .   -...++.++|
T Consensus       239 ~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~  317 (537)
T 3fp2_A          239 RENAALALCYTGIFHFLKNNLLDAQVLLQESINLHPT-PNSYIFLALTLADKENSQEFFKFFQKAVDLNPEYPPTYYHRG  317 (537)
T ss_dssp             HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCC-HHHHHHHHHHTCCSSCCHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHhcCCC-chHHHHHHHHHHHhcCHHHHHHHHHHHhccCCCCHHHHHHHH
Confidence            3445667888899999999999999999999998886 221 00          000011111   1   1135688889


Q ss_pred             HHHHHhcCHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHHHHHHHH
Q 017811          241 ACLLKLKRYEEAIGQCSLVLGEDENNVKALFRRGKARAELGQTDAAREDFLKAGKFAPEDKSIARELRLLAEHEKAVYKK  320 (365)
Q Consensus       241 ~~~~kl~~~~~A~~~~~~aL~~~p~n~ka~~~~g~a~~~l~~~~~A~~~l~~al~l~P~n~~~~~~l~~l~~~~~~~~~~  320 (365)
                      .++..+|++++|+..+++++.++|.+..+++.+|.++..+|++++|+..|++++.++|++..+...++.+....++..++
T Consensus       318 ~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A  397 (537)
T 3fp2_A          318 QMYFILQDYKNAKEDFQKAQSLNPENVYPYIQLACLLYKQGKFTESEAFFNETKLKFPTLPEVPTFFAEILTDRGDFDTA  397 (537)
T ss_dssp             HHHHHTTCHHHHHHHHHHHHHHCTTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTHHHHHHHHHHHHTTCHHHH
T ss_pred             HHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhCCHHHH
Confidence            99999999999999999999999988889999999999999999999999999999998888888888887777666544


Q ss_pred             HHHHHhcccCCCCCccc
Q 017811          321 QKEIYKGIFGPRPEPKQ  337 (365)
Q Consensus       321 ~k~~y~kmf~~~~~~~~  337 (365)
                      . ..|.+++...|....
T Consensus       398 ~-~~~~~a~~~~~~~~~  413 (537)
T 3fp2_A          398 I-KQYDIAKRLEEVQEK  413 (537)
T ss_dssp             H-HHHHHHHHHHHHCSS
T ss_pred             H-HHHHHHHHcCCcchh
Confidence            4 447777665554433

>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A

Probab=99.18  E-value=2.5e-10  Score=84.33  Aligned_cols=80  Identities=26%  Similarity=0.324  Sum_probs=75.3

Q ss_pred             hhhhHHHHHHHHhcCHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHH
Q 017811          234 PCHLNMAACLLKLKRYEEAIGQCSLVLGEDENNVKALFRRGKARAELGQTDAAREDFLKAGKFAPEDKSIARELRLLAEH  313 (365)
Q Consensus       234 ~~~~nla~~~~kl~~~~~A~~~~~~aL~~~p~n~ka~~~~g~a~~~l~~~~~A~~~l~~al~l~P~n~~~~~~l~~l~~~  313 (365)
                      .+++++|.++...++|++|+..+.+++.++|.+..+++.+|.++..+|++++|+..|++++.++|++..+...+..+...
T Consensus        10 ~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~   89 (91)
T 1na3_A           10 EAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAKQNLGNAKQK   89 (91)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHh
Confidence            45899999999999999999999999999999999999999999999999999999999999999999999888877543

>2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8

Probab=99.18  E-value=9.4e-11  Score=97.26  Aligned_cols=102  Identities=18%  Similarity=0.090  Sum_probs=91.8

Q ss_pred             chhhhHHHHHHHHhcCHHHHHHHHHHHHhCCCC-------CHH-----HHHHHHHHHHHcCCHHHHHHHHHHHHhh----
Q 017811          233 NPCHLNMAACLLKLKRYEEAIGQCSLVLGEDEN-------NVK-----ALFRRGKARAELGQTDAAREDFLKAGKF----  296 (365)
Q Consensus       233 ~~~~~nla~~~~kl~~~~~A~~~~~~aL~~~p~-------n~k-----a~~~~g~a~~~l~~~~~A~~~l~~al~l----  296 (365)
                      ...+.++|.+++++|+|++|+..|+++|+++|+       +..     +|+++|.++..+|+|++|+.+|.+||++    
T Consensus        11 a~~~~~~G~~l~~~g~~eeAi~~Y~kAL~l~p~~~~~~a~~~~~~~a~a~~n~g~al~~Lgr~~eAl~~~~kAL~l~n~~   90 (159)
T 2hr2_A           11 AYLALSDAQRQLVAGEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALHYFNRR   90 (159)
T ss_dssp             HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCCcchhhhhhccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhhcc
Confidence            345899999999999999999999999999999       555     9999999999999999999999999999    


Q ss_pred             ---CCCcHHHH----HHHHHHHHHHHHHHHHHHHHHhcccCCCCCc
Q 017811          297 ---APEDKSIA----RELRLLAEHEKAVYKKQKEIYKGIFGPRPEP  335 (365)
Q Consensus       297 ---~P~n~~~~----~~l~~l~~~~~~~~~~~k~~y~kmf~~~~~~  335 (365)
                         +|++..++    ..++.+...++++.++... |.+.+...|..
T Consensus        91 ~e~~pd~~~A~~~~~~~rG~aL~~lgr~eEAl~~-y~kAlel~p~d  135 (159)
T 2hr2_A           91 GELNQDEGKLWISAVYSRALALDGLGRGAEAMPE-FKKVVEMIEER  135 (159)
T ss_dssp             CCTTSTHHHHHHHHHHHHHHHHHHTTCHHHHHHH-HHHHHHHHHHC
T ss_pred             ccCCCchHHHHHHHHHhHHHHHHHCCCHHHHHHH-HHHHHhcCCCc
Confidence               99999999    9999999999888877766 88887666543

>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens}

Probab=99.17  E-value=9.9e-11  Score=113.46  Aligned_cols=148  Identities=14%  Similarity=0.025  Sum_probs=109.3

Q ss_pred             HHHhhhhhhhhhhhhhHHHHHHHHHHHHHhhccchhhhhhhhHHHHHHHhhchhhhHHHHHHHHhcCHHHHHHHHHHHHh
Q 017811          182 ADRRKMDGNALFKEEKLEEAMQQYEMAIAYMGDDFMFQLFGKYRDMALAVKNPCHLNMAACLLKLKRYEEAIGQCSLVLG  261 (365)
Q Consensus       182 a~~~k~~G~~~~~~~~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~kl~~~~~A~~~~~~aL~  261 (365)
                      +..+...|..++..|+|++|+..|++|+++.+........        .-...+|.|+|.+|..+|+|++|+.++++++.
T Consensus        51 a~~yn~Lg~~~~~~G~~~eAl~~~~kAl~~~~~~~~~~~~--------~~~~~~~~nla~~y~~~g~~~~A~~~~~ka~~  122 (472)
T 4g1t_A           51 ATMCNLLAYLKHLKGQNEAALECLRKAEELIQQEHADQAE--------IRSLVTWGNYAWVYYHMGRLSDVQIYVDKVKH  122 (472)
T ss_dssp             CHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSGGGCT--------TTTHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhcCccccc--------hHHHHHHHHHHHHHHHcCChHHHHHHHHHHHH
Confidence            4456778999999999999999999999986542211000        00133588999999999999999999999987


Q ss_pred             C--------CCCCHHHHHHHHHHHHHcC--CHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHHHHHHH--HHHHHHhccc
Q 017811          262 E--------DENNVKALFRRGKARAELG--QTDAAREDFLKAGKFAPEDKSIARELRLLAEHEKAVYK--KQKEIYKGIF  329 (365)
Q Consensus       262 ~--------~p~n~ka~~~~g~a~~~l~--~~~~A~~~l~~al~l~P~n~~~~~~l~~l~~~~~~~~~--~~k~~y~kmf  329 (365)
                      +        .+..+.++..+|.++..++  +|++|+..|++|++++|+++.+...+..+........+  +.-..|++.+
T Consensus       123 i~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~y~~A~~~~~kal~~~p~~~~~~~~~~~~~~~l~~~~~~~~al~~~~~al  202 (472)
T 4g1t_A          123 VCEKFSSPYRIESPELDCEEGWTRLKCGGNQNERAKVCFEKALEKKPKNPEFTSGLAIASYRLDNWPPSQNAIDPLRQAI  202 (472)
T ss_dssp             HHHHSCCSSCCCCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHSCCCCCTHHHHHHHH
T ss_pred             HhHhcccccchhhHHHHHHHHHHHHHHccccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCchHHHHHHHHHHHHh
Confidence            6        3456789999998887765  69999999999999999999998888877555443221  1223455555


Q ss_pred             CCCCCccc
Q 017811          330 GPRPEPKQ  337 (365)
Q Consensus       330 ~~~~~~~~  337 (365)
                      ...|....
T Consensus       203 ~l~p~~~~  210 (472)
T 4g1t_A          203 RLNPDNQY  210 (472)
T ss_dssp             HHCSSCHH
T ss_pred             hcCCcchH
Confidence            55554443

>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis}

Probab=99.15  E-value=1.5e-10  Score=88.46  Aligned_cols=101  Identities=11%  Similarity=-0.037  Sum_probs=90.0

Q ss_pred             hhhhHHHHHHHHhcCHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC--cHHHHHHHHHHH
Q 017811          234 PCHLNMAACLLKLKRYEEAIGQCSLVLGEDENNVKALFRRGKARAELGQTDAAREDFLKAGKFAPE--DKSIARELRLLA  311 (365)
Q Consensus       234 ~~~~nla~~~~kl~~~~~A~~~~~~aL~~~p~n~ka~~~~g~a~~~l~~~~~A~~~l~~al~l~P~--n~~~~~~l~~l~  311 (365)
                      .+++++|.++...|++++|+..+++++.++|.+..+++.+|.++..+|++++|+..|+++++++|+  +..+...+..+.
T Consensus         7 ~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~l~~~~   86 (112)
T 2kck_A            7 EEYYLEGVLQYDAGNYTESIDLFEKAIQLDPEESKYWLMKGKALYNLERYEEAVDCYNYVINVIEDEYNKDVWAAKADAL   86 (112)
T ss_dssp             TGGGGHHHHHHSSCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSCCTTCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhhhHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCcccchHHHHHHHHHHH
Confidence            358999999999999999999999999999999999999999999999999999999999999999  999999999988


Q ss_pred             HHH-HHHHHHHHHHHhcccCCCCCc
Q 017811          312 EHE-KAVYKKQKEIYKGIFGPRPEP  335 (365)
Q Consensus       312 ~~~-~~~~~~~k~~y~kmf~~~~~~  335 (365)
                      ... ++..+ ..+.+.+.....|..
T Consensus        87 ~~~~~~~~~-A~~~~~~~~~~~p~~  110 (112)
T 2kck_A           87 RYIEGKEVE-AEIAEARAKLEHHHH  110 (112)
T ss_dssp             TTCSSCSHH-HHHHHHHHGGGCCCC
T ss_pred             HHHhCCHHH-HHHHHHHHhhcccCC
Confidence            777 66654 445577777666654

>2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus}

Probab=99.14  E-value=1.1e-10  Score=98.51  Aligned_cols=132  Identities=11%  Similarity=0.059  Sum_probs=103.2

Q ss_pred             HHHHHHHhhhhhhhhhhhhhHHHHHHHHHHHHHhhccchhhhhhhhHHHHHHHhhchhhhHHHHH-HHHhcCHHHHHHHH
Q 017811          178 RIGAADRRKMDGNALFKEEKLEEAMQQYEMAIAYMGDDFMFQLFGKYRDMALAVKNPCHLNMAAC-LLKLKRYEEAIGQC  256 (365)
Q Consensus       178 ~~~~a~~~k~~G~~~~~~~~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~-~~kl~~~~~A~~~~  256 (365)
                      ....+..+...|..++..|++++|+..|++++...| +..+                 +..++.+ +...+....|+..+
T Consensus        36 ~P~~~~a~~~la~~~~~~g~~~~A~~~~~~a~~~~p-~~~~-----------------~~~~~~~~~~~~~~~~~a~~~~   97 (176)
T 2r5s_A           36 LQSRGDVKLAKADCLLETKQFELAQELLATIPLEYQ-DNSY-----------------KSLIAKLELHQQAAESPELKRL   97 (176)
T ss_dssp             HHTSHHHHHHHHHHHHHTTCHHHHHHHHTTCCGGGC-CHHH-----------------HHHHHHHHHHHHHTSCHHHHHH
T ss_pred             CCCcHHHHHHHHHHHHHCCCHHHHHHHHHHhhhccC-ChHH-----------------HHHHHHHHHHhhcccchHHHHH
Confidence            345566788899999999999999999999999988 5332                 2223322 22334445689999


Q ss_pred             HHHHhCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCc--HHHHHHHHHHHHHHHHHHHHHHHHHhcc
Q 017811          257 SLVLGEDENNVKALFRRGKARAELGQTDAAREDFLKAGKFAPED--KSIARELRLLAEHEKAVYKKQKEIYKGI  328 (365)
Q Consensus       257 ~~aL~~~p~n~ka~~~~g~a~~~l~~~~~A~~~l~~al~l~P~n--~~~~~~l~~l~~~~~~~~~~~k~~y~km  328 (365)
                      ++++.++|+++.+++.+|.++..+|++++|+..|+++++++|+.  ..++..+..+....++..+.... |++.
T Consensus        98 ~~al~~~P~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~a~~~l~~~~~~~g~~~~A~~~-y~~a  170 (176)
T 2r5s_A           98 EQELAANPDNFELACELAVQYNQVGRDEEALELLWNILKVNLGAQDGEVKKTFMDILSALGQGNAIASK-YRRQ  170 (176)
T ss_dssp             HHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTTTTTHHHHHHHHHHHHHCSSCHHHHH-HHHH
T ss_pred             HHHHHhCCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccChHHHHHHHHHHHHHhCCCCcHHHH-HHHH
Confidence            99999999999999999999999999999999999999999975  56888888887766655443333 4443

>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis}

Probab=99.14  E-value=4.5e-11  Score=90.46  Aligned_cols=69  Identities=19%  Similarity=0.263  Sum_probs=50.6

Q ss_pred             hhHHHHHHHHhcCHHHHHHHHHHHHhCCCCCHH-HHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCcHHHH
Q 017811          236 HLNMAACLLKLKRYEEAIGQCSLVLGEDENNVK-ALFRRGKARAELGQTDAAREDFLKAGKFAPEDKSIA  304 (365)
Q Consensus       236 ~~nla~~~~kl~~~~~A~~~~~~aL~~~p~n~k-a~~~~g~a~~~l~~~~~A~~~l~~al~l~P~n~~~~  304 (365)
                      .+++|.++++.|+|++|+..|+++++.+|.++. +++.+|.+|..+|++++|+..|++++.++|++..+.
T Consensus         3 ~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~   72 (99)
T 2kc7_A            3 QLKTIKELINQGDIENALQALEEFLQTEPVGKDEAYYLMGNAYRKLGDWQKALNNYQSAIELNPDSPALQ   72 (99)
T ss_dssp             THHHHHHHHHHTCHHHHHHHHHHHHHHCSSTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTHHH
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHH
Confidence            456777777777777777777777777777777 777777777777777777777777777777776655

>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A*

Probab=99.13  E-value=1.2e-10  Score=106.49  Aligned_cols=120  Identities=11%  Similarity=-0.025  Sum_probs=105.8

Q ss_pred             HhhhhhhhhhhhhhHHHHHHHHHHHHHhhccchhhhhhhhHHHHHHHhhchhhhHHHHHHHHhcCHHHHHHHHHHHHhCC
Q 017811          184 RRKMDGNALFKEEKLEEAMQQYEMAIAYMGDDFMFQLFGKYRDMALAVKNPCHLNMAACLLKLKRYEEAIGQCSLVLGED  263 (365)
Q Consensus       184 ~~k~~G~~~~~~~~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~kl~~~~~A~~~~~~aL~~~  263 (365)
                      .+...|..+...|++++|+..|++++...|+...                 .+++.+..+...+++.+|+..+++++..+
T Consensus       153 a~~~la~~~~~~g~~~~A~~~l~~~~~~~p~~~~-----------------~~~~~~~~l~~~~~~~~a~~~l~~al~~~  215 (287)
T 3qou_A          153 IGLLLAETLIALNRSEDAEAVLXTIPLQDQDTRY-----------------QGLVAQIELLXQAADTPEIQQLQQQVAEN  215 (287)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHTTSCGGGCSHHH-----------------HHHHHHHHHHHHHTSCHHHHHHHHHHHHC
T ss_pred             HHHHHHHHHHHCCCHHHHHHHHHhCchhhcchHH-----------------HHHHHHHHHHhhcccCccHHHHHHHHhcC
Confidence            4556888999999999999999999999885322                 36788888999999999999999999999


Q ss_pred             CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCc--HHHHHHHHHHHHHHHHHHHH
Q 017811          264 ENNVKALFRRGKARAELGQTDAAREDFLKAGKFAPED--KSIARELRLLAEHEKAVYKK  320 (365)
Q Consensus       264 p~n~ka~~~~g~a~~~l~~~~~A~~~l~~al~l~P~n--~~~~~~l~~l~~~~~~~~~~  320 (365)
                      |+++.+++.+|.+|...|++++|+..|.+++.++|++  ..++..+..+....++..+.
T Consensus       216 P~~~~~~~~la~~l~~~g~~~~A~~~l~~~l~~~p~~~~~~a~~~l~~~~~~~g~~~~a  274 (287)
T 3qou_A          216 PEDAALATQLALQLHQVGRNEEALELLFGHLRXDLTAADGQTRXTFQEILAALGTGDAL  274 (287)
T ss_dssp             TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTGGGGHHHHHHHHHHHHHCTTCHH
T ss_pred             CccHHHHHHHHHHHHHcccHHHHHHHHHHHHhcccccccchHHHHHHHHHHHcCCCCcH
Confidence            9999999999999999999999999999999999998  88888888887776654433

>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans}

Probab=99.13  E-value=1.1e-10  Score=96.87  Aligned_cols=103  Identities=15%  Similarity=0.072  Sum_probs=93.6

Q ss_pred             chhhhHHHHHHHHhcCHHHHHHHHHHHHhC------------------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 017811          233 NPCHLNMAACLLKLKRYEEAIGQCSLVLGE------------------DENNVKALFRRGKARAELGQTDAAREDFLKAG  294 (365)
Q Consensus       233 ~~~~~nla~~~~kl~~~~~A~~~~~~aL~~------------------~p~n~ka~~~~g~a~~~l~~~~~A~~~l~~al  294 (365)
                      ...+.++|.++++.|+|++|+..|+++|.+                  +|.+..+|+++|.||..+|+|++|+.++.+++
T Consensus        11 a~~~~~~G~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~A~~~~~~al   90 (162)
T 3rkv_A           11 VEALRQKGNELFVQKDYKEAIDAYRDALTRLDTLILREKPGEPEWVELDRKNIPLYANMSQCYLNIGDLHEAEETSSEVL   90 (162)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSCTTSHHHHHHHHTHHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHH
Confidence            345899999999999999999999999999                  78888999999999999999999999999999


Q ss_pred             hhCCCcHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCCCcc
Q 017811          295 KFAPEDKSIARELRLLAEHEKAVYKKQKEIYKGIFGPRPEPK  336 (365)
Q Consensus       295 ~l~P~n~~~~~~l~~l~~~~~~~~~~~k~~y~kmf~~~~~~~  336 (365)
                      .++|++..+...++.+...++++.++.. .|.+.+...|...
T Consensus        91 ~~~p~~~~a~~~~g~~~~~~g~~~~A~~-~~~~al~l~p~~~  131 (162)
T 3rkv_A           91 KREETNEKALFRRAKARIAAWKLDEAEE-DLKLLLRNHPAAA  131 (162)
T ss_dssp             HHSTTCHHHHHHHHHHHHHTTCHHHHHH-HHHHHHHHCGGGH
T ss_pred             hcCCcchHHHHHHHHHHHHHhcHHHHHH-HHHHHHhcCCCCH
Confidence            9999999999999999998888876655 4888888877654

>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe}

Probab=99.13  E-value=6.3e-10  Score=110.96  Aligned_cols=130  Identities=13%  Similarity=0.050  Sum_probs=105.2

Q ss_pred             HhhhhhhhhhhhhhHHHHHHHHHHHHHhhccchhhhhhhhHHHHHHHhhchhhhHHHHHHHHhcCHHHHHHHHHHHHhCC
Q 017811          184 RRKMDGNALFKEEKLEEAMQQYEMAIAYMGDDFMFQLFGKYRDMALAVKNPCHLNMAACLLKLKRYEEAIGQCSLVLGED  263 (365)
Q Consensus       184 ~~k~~G~~~~~~~~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~kl~~~~~A~~~~~~aL~~~  263 (365)
                      .+...|..+++.|++++|+..|.+++.+.|.+.                 .++++++.+|.+.|++++|+..+++++..+
T Consensus       375 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~-----------------~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~  437 (597)
T 2xpi_A          375 TWLAVGIYYLCVNKISEARRYFSKSSTMDPQFG-----------------PAWIGFAHSFAIEGEHDQAISAYTTAARLF  437 (597)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCH-----------------HHHHHHHHHHHHHTCHHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHHhccHHHHHHHHHHHHHhCCCCH-----------------HHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Confidence            444566667777777777777777776666542                 248899999999999999999999999999


Q ss_pred             CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHHHHHHHHHHHHHhcccCC
Q 017811          264 ENNVKALFRRGKARAELGQTDAAREDFLKAGKFAPEDKSIARELRLLAEHEKAVYKKQKEIYKGIFGP  331 (365)
Q Consensus       264 p~n~ka~~~~g~a~~~l~~~~~A~~~l~~al~l~P~n~~~~~~l~~l~~~~~~~~~~~k~~y~kmf~~  331 (365)
                      |.+..+++.+|.+|...|++++|+..|+++++++|.+..+...+..+..+.++..++. ..|.+++..
T Consensus       438 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~-~~~~~~~~~  504 (597)
T 2xpi_A          438 QGTHLPYLFLGMQHMQLGNILLANEYLQSSYALFQYDPLLLNELGVVAFNKSDMQTAI-NHFQNALLL  504 (597)
T ss_dssp             TTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTCHHHHH-HHHHHHHHH
T ss_pred             ccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhCCHHHHH-HHHHHHHHh
Confidence            9999999999999999999999999999999999999999888888877776665544 457777655

>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1

Probab=99.12  E-value=7.3e-10  Score=85.19  Aligned_cols=102  Identities=17%  Similarity=0.048  Sum_probs=91.8

Q ss_pred             hhhhHHHHHHHHhcCHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHH
Q 017811          234 PCHLNMAACLLKLKRYEEAIGQCSLVLGEDENNVKALFRRGKARAELGQTDAAREDFLKAGKFAPEDKSIARELRLLAEH  313 (365)
Q Consensus       234 ~~~~nla~~~~kl~~~~~A~~~~~~aL~~~p~n~ka~~~~g~a~~~l~~~~~A~~~l~~al~l~P~n~~~~~~l~~l~~~  313 (365)
                      ..++++|.+++..|+|++|+..+.+++..+|.++.+++.+|.++..+|++++|+..+++++.++|++..+...+..+...
T Consensus         5 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~   84 (118)
T 1elw_A            5 NELKEKGNKALSVGNIDDALQCYSEAIKLDPHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKPDWGKGYSRKAAALEF   84 (118)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHhhccHHHHHHHHHHHHHhCcccHHHHHHHHHHHHH
Confidence            35899999999999999999999999999999999999999999999999999999999999999999999999999887


Q ss_pred             HHHHHHHHHHHHhcccCCCCCcc
Q 017811          314 EKAVYKKQKEIYKGIFGPRPEPK  336 (365)
Q Consensus       314 ~~~~~~~~k~~y~kmf~~~~~~~  336 (365)
                      .++..+. ...|.+.+...|...
T Consensus        85 ~~~~~~A-~~~~~~~~~~~~~~~  106 (118)
T 1elw_A           85 LNRFEEA-KRTYEEGLKHEANNP  106 (118)
T ss_dssp             TTCHHHH-HHHHHHHHTTCTTCH
T ss_pred             HhhHHHH-HHHHHHHHHcCCCCH
Confidence            7776554 455888888777543

>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A

Probab=99.12  E-value=2.7e-10  Score=87.00  Aligned_cols=76  Identities=21%  Similarity=0.220  Sum_probs=68.1

Q ss_pred             hhhHHHHHHHHhcCHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC--cHHHHHHHHHH
Q 017811          235 CHLNMAACLLKLKRYEEAIGQCSLVLGEDENNVKALFRRGKARAELGQTDAAREDFLKAGKFAPE--DKSIARELRLL  310 (365)
Q Consensus       235 ~~~nla~~~~kl~~~~~A~~~~~~aL~~~p~n~ka~~~~g~a~~~l~~~~~A~~~l~~al~l~P~--n~~~~~~l~~l  310 (365)
                      +++++|.+|+.+|+|++|+..++++++++|+++.+|+.+|.+|..+|++++|+..|++++.+.|.  +......+..+
T Consensus         9 ~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~l~~~   86 (100)
T 3ma5_A            9 TRYALAQEHLKHDNASRALALFEELVETDPDYVGTYYHLGKLYERLDRTDDAIDTYAQGIEVAREEGTQKDLSELQDA   86 (100)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCHHHHHHHHHH
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhhhcCCchhHHHHHHHH
Confidence            58999999999999999999999999999999999999999999999999999999999999875  34444444433

>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A

Probab=99.12  E-value=5.1e-10  Score=82.66  Aligned_cols=84  Identities=27%  Similarity=0.354  Sum_probs=77.1

Q ss_pred             HHHHhhhhhhhhhhhhhHHHHHHHHHHHHHhhccchhhhhhhhHHHHHHHhhchhhhHHHHHHHHhcCHHHHHHHHHHHH
Q 017811          181 AADRRKMDGNALFKEEKLEEAMQQYEMAIAYMGDDFMFQLFGKYRDMALAVKNPCHLNMAACLLKLKRYEEAIGQCSLVL  260 (365)
Q Consensus       181 ~a~~~k~~G~~~~~~~~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~kl~~~~~A~~~~~~aL  260 (365)
                      .+..+...|..++..++|.+|+..|.+++...|.+..                 +++++|.++.++|++++|+.++.+++
T Consensus         8 ~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~-----------------~~~~l~~~~~~~~~~~~A~~~~~~a~   70 (91)
T 1na3_A            8 SAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAE-----------------AWYNLGNAYYKQGDYDEAIEYYQKAL   70 (91)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHH-----------------HHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred             cHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHH-----------------HHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence            4667888999999999999999999999999887633                 48999999999999999999999999


Q ss_pred             hCCCCCHHHHHHHHHHHHHcC
Q 017811          261 GEDENNVKALFRRGKARAELG  281 (365)
Q Consensus       261 ~~~p~n~ka~~~~g~a~~~l~  281 (365)
                      .++|.+..+++.+|.++..+|
T Consensus        71 ~~~p~~~~~~~~l~~~~~~~g   91 (91)
T 1na3_A           71 ELDPNNAEAKQNLGNAKQKQG   91 (91)
T ss_dssp             HHCTTCHHHHHHHHHHHHHHC
T ss_pred             hcCCCCHHHHHHHHHHHHhcC
Confidence            999999999999999998765

>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens}

Probab=99.11  E-value=3.4e-10  Score=89.36  Aligned_cols=101  Identities=13%  Similarity=0.061  Sum_probs=90.8

Q ss_pred             hhhhHHHHHHHHhcCHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHH
Q 017811          234 PCHLNMAACLLKLKRYEEAIGQCSLVLGEDENNVKALFRRGKARAELGQTDAAREDFLKAGKFAPEDKSIARELRLLAEH  313 (365)
Q Consensus       234 ~~~~nla~~~~kl~~~~~A~~~~~~aL~~~p~n~ka~~~~g~a~~~l~~~~~A~~~l~~al~l~P~n~~~~~~l~~l~~~  313 (365)
                      ..++++|.+++..|+|++|+..+++++..+|.+..+++.+|.++..+|++++|+..|++++.++|++..+...++.+...
T Consensus        17 ~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~   96 (133)
T 2lni_A           17 LMVKNKGNECFQKGDYPQAMKHYTEAIKRNPKDAKLYSNRAACYTKLLEFQLALKDCEECIQLEPTFIKGYTRKAAALEA   96 (133)
T ss_dssp             HHHHHHHHHHHHTTCSHHHHHHHHHHHTTCTTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCchHHHHHHHHHHHH
Confidence            45899999999999999999999999999999999999999999999999999999999999999999999999999887


Q ss_pred             HHHHHHHHHHHHhcccCCCCCc
Q 017811          314 EKAVYKKQKEIYKGIFGPRPEP  335 (365)
Q Consensus       314 ~~~~~~~~k~~y~kmf~~~~~~  335 (365)
                      .++..+.. ..|.+.+...|..
T Consensus        97 ~~~~~~A~-~~~~~~~~~~p~~  117 (133)
T 2lni_A           97 MKDYTKAM-DVYQKALDLDSSC  117 (133)
T ss_dssp             TTCHHHHH-HHHHHHHHHCGGG
T ss_pred             HhhHHHHH-HHHHHHHHhCCCc
Confidence            77766554 5588877666543

>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A

Probab=99.11  E-value=4.2e-10  Score=100.29  Aligned_cols=109  Identities=15%  Similarity=-0.087  Sum_probs=92.0

Q ss_pred             HHHHHHhhhhhhhhhhhhhHHHHHHHHHHHHHhhccchhhhhhhhHHHHHHHhhchhhhHHHHHHHHhcCHHHHHHHHHH
Q 017811          179 IGAADRRKMDGNALFKEEKLEEAMQQYEMAIAYMGDDFMFQLFGKYRDMALAVKNPCHLNMAACLLKLKRYEEAIGQCSL  258 (365)
Q Consensus       179 ~~~a~~~k~~G~~~~~~~~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~kl~~~~~A~~~~~~  258 (365)
                      ...+..+...|..++..|+|++|+..|.+++.+........         ......++.++|.+|..+|++++|+.++.+
T Consensus        82 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~---------~~~~~~~~~~la~~~~~~g~~~~A~~~~~~  152 (283)
T 3edt_B           82 PAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKF---------HPDVAKQLNNLALLCQNQGKAEEVEYYYRR  152 (283)
T ss_dssp             HHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTT---------CHHHHHHHHHHHHHHHTTTCHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHcCCC---------ChHHHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence            34566788899999999999999999999999852210000         001244699999999999999999999999


Q ss_pred             HHhC--------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Q 017811          259 VLGE--------DENNVKALFRRGKARAELGQTDAAREDFLKAGKF  296 (365)
Q Consensus       259 aL~~--------~p~n~ka~~~~g~a~~~l~~~~~A~~~l~~al~l  296 (365)
                      ++.+        +|....+++.+|.++..+|++++|+..|++++.+
T Consensus       153 al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~  198 (283)
T 3edt_B          153 ALEIYATRLGPDDPNVAKTKNNLASCYLKQGKYQDAETLYKEILTR  198 (283)
T ss_dssp             HHHHHHHHSCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence            9998        7778899999999999999999999999999987

>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus}

Probab=99.11  E-value=6.5e-10  Score=90.22  Aligned_cols=131  Identities=14%  Similarity=0.001  Sum_probs=104.0

Q ss_pred             HHHHHHhhhhhhhhhhhhhHHHHHHHHHHHHHhhccchhhhhhhhHHHHHHHhhchhhhHHHHHHHHhcCHHHHHHHHHH
Q 017811          179 IGAADRRKMDGNALFKEEKLEEAMQQYEMAIAYMGDDFMFQLFGKYRDMALAVKNPCHLNMAACLLKLKRYEEAIGQCSL  258 (365)
Q Consensus       179 ~~~a~~~k~~G~~~~~~~~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~kl~~~~~A~~~~~~  258 (365)
                      ...+..+...|..++..|+|++|+..|.+++.+.+....           ......++.++|.++..+|++++|+.++.+
T Consensus         6 ~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~-----------~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~   74 (164)
T 3ro3_A            6 AAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGD-----------KAAERIAYSNLGNAYIFLGEFETASEYYKK   74 (164)
T ss_dssp             HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTC-----------HHHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHhCC-----------chHHHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence            356778899999999999999999999999999765221           112345799999999999999999999999


Q ss_pred             HHhCCCCC------HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCc------HHHHHHHHHHHHHHHHHHHH
Q 017811          259 VLGEDENN------VKALFRRGKARAELGQTDAAREDFLKAGKFAPED------KSIARELRLLAEHEKAVYKK  320 (365)
Q Consensus       259 aL~~~p~n------~ka~~~~g~a~~~l~~~~~A~~~l~~al~l~P~n------~~~~~~l~~l~~~~~~~~~~  320 (365)
                      ++.+.+..      ..+++.+|.++..+|++++|+..+++++.+.+..      ..+...+..+....++..+.
T Consensus        75 a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A  148 (164)
T 3ro3_A           75 TLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQA  148 (164)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHH
T ss_pred             HHHHHHHhCCcHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHccchHhHHHHHHHHHHHHHHccCHHHH
Confidence            99876543      6799999999999999999999999999874321      33455566665555554433

>1t11_A Trigger factor, TF; helix-turn-helix, four-helix-bundle, ppiase, chaperone; 2.50A {Vibrio cholerae} SCOP: a.223.1.1 d.241.2.1 d.26.1.1 PDB: 1l1p_A

Probab=99.11  E-value=3.9e-11  Score=114.54  Aligned_cols=87  Identities=9%  Similarity=0.192  Sum_probs=76.0

Q ss_pred             CCCCCCEEEEEEEEEEcCCCeeeccCcCCCCcceeecCCCCchhhhHHHHHhcCCcCcEEEEEeccccccCCCCCCCCCC
Q 017811           66 KPSKYSTCFLHYRAWAESTRHKFDDTWLEQQPLEMVLGKEKKEMTGLAIGVSSMKAGEHALLHVGWELGYGKEGSFSFPN  145 (365)
Q Consensus        66 ~p~~g~~v~v~y~~~~~~~g~~fd~s~~~~~p~~f~lg~~~~~i~g~e~~l~~Mk~GE~~~~~i~~~~~yg~~g~~~~~~  145 (365)
                      .+..||.|+|||+|+. + |.+||++  .+.|+.|.+|.| ++||||+.+|.+|++||+..|.|++...||..+      
T Consensus       160 ~~~~gD~V~i~y~g~~-d-G~~fd~~--~~~~~~~~lG~g-~~ipgfee~L~Gmk~Ge~~~v~v~fp~dy~~~~------  228 (392)
T 1t11_A          160 AAENGKRVSIDFVGSI-D-GVEFEGG--KAENFPLEMGAG-RMIPGFEDGIVGKTKGMEFVIDVTFPEDYHAEN------  228 (392)
T ss_dssp             CCCTTCEEEEEEEEES-S-SSCCTTC--EEEEEEEETTSC-CBSTTSGGGTTTCCSSCCCCEEEECCTTCSCTT------
T ss_pred             CCCCCCEEEEEEEEEE-C-CEEccCC--CccceEEEecCC-CcchhHHHHhCCCCCCCEEEEEEeCccccccCC------
Confidence            5789999999999994 5 9999987  367999999999 899999999999999999999998666787543      


Q ss_pred             CCCCCcEEEEEEEEeeecC
Q 017811          146 VSPMADLVYEVVLIGFDET  164 (365)
Q Consensus       146 ip~~~~l~~~iel~~~~~~  164 (365)
                       .+|.++.|.|+++.+...
T Consensus       229 -laGk~~~F~V~v~~i~~~  246 (392)
T 1t11_A          229 -LKGKAAKFAIKVNKVEAR  246 (392)
T ss_dssp             -TSSCEEEECCCEEEEEEE
T ss_pred             -CCCCeEEEEEEEEEEEcC
Confidence             268899999999988764

>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1

Probab=99.10  E-value=1.2e-10  Score=100.00  Aligned_cols=105  Identities=11%  Similarity=-0.084  Sum_probs=93.3

Q ss_pred             chhhhHHHHHHHHhcCHHHHHHHHHHHHhCCCCCH----------------HHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Q 017811          233 NPCHLNMAACLLKLKRYEEAIGQCSLVLGEDENNV----------------KALFRRGKARAELGQTDAAREDFLKAGKF  296 (365)
Q Consensus       233 ~~~~~nla~~~~kl~~~~~A~~~~~~aL~~~p~n~----------------ka~~~~g~a~~~l~~~~~A~~~l~~al~l  296 (365)
                      ...+.++|.+++..|+|++|+..|.+++.+.|.++                .+++++|.++..+|+|++|+.++++++.+
T Consensus        38 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~  117 (198)
T 2fbn_A           38 AFDIKEEGNEFFKKNEINEAIVKYKEALDFFIHTEEWDDQILLDKKKNIEISCNLNLATCYNKNKDYPKAIDHASKVLKI  117 (198)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCTTCCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcccccchhhHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHh
Confidence            34588999999999999999999999999999887                89999999999999999999999999999


Q ss_pred             CCCcHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCCCcccc
Q 017811          297 APEDKSIARELRLLAEHEKAVYKKQKEIYKGIFGPRPEPKQK  338 (365)
Q Consensus       297 ~P~n~~~~~~l~~l~~~~~~~~~~~k~~y~kmf~~~~~~~~~  338 (365)
                      +|++..+...++.+...++++.++ ...|.+.+...|.....
T Consensus       118 ~p~~~~~~~~lg~~~~~~~~~~~A-~~~~~~al~~~p~~~~~  158 (198)
T 2fbn_A          118 DKNNVKALYKLGVANMYFGFLEEA-KENLYKAASLNPNNLDI  158 (198)
T ss_dssp             STTCHHHHHHHHHHHHHHTCHHHH-HHHHHHHHHHSTTCHHH
T ss_pred             CcccHHHHHHHHHHHHHcccHHHH-HHHHHHHHHHCCCcHHH
Confidence            999999999999998888877655 45588888777765443

>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis}

Probab=99.10  E-value=5.2e-10  Score=105.94  Aligned_cols=139  Identities=17%  Similarity=0.100  Sum_probs=102.7

Q ss_pred             HHHHHhhhhhhhhhhhhhHHHHHHHHHHHHHhhccchhhhhhhhHHHHHHHhhchhhhHHHHHHHHhcCHHHHHHHHHHH
Q 017811          180 GAADRRKMDGNALFKEEKLEEAMQQYEMAIAYMGDDFMFQLFGKYRDMALAVKNPCHLNMAACLLKLKRYEEAIGQCSLV  259 (365)
Q Consensus       180 ~~a~~~k~~G~~~~~~~~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~kl~~~~~A~~~~~~a  259 (365)
                      ..+..+...|..++..|+|..|+..|.+|+.+.+.....          ......++.++|.+|..+|+|++|+.++.++
T Consensus       141 ~~a~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~----------~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~a  210 (383)
T 3ulq_A          141 EKAEFFFKMSESYYYMKQTYFSMDYARQAYEIYKEHEAY----------NIRLLQCHSLFATNFLDLKQYEDAISHFQKA  210 (383)
T ss_dssp             HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTCSTT----------HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCccc----------hHHHHHHHHHHHHHHHHhcCHHHHHHHHHHH
Confidence            456777888888888888888888888888887654221          0112456888888888888898898888888


Q ss_pred             HhCCCCC------HHHHHHHHHHHHHcCCHHHHHHHHHHHHh-----hC-CCcHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 017811          260 LGEDENN------VKALFRRGKARAELGQTDAAREDFLKAGK-----FA-PEDKSIARELRLLAEHEKAVYKKQKEIYKG  327 (365)
Q Consensus       260 L~~~p~n------~ka~~~~g~a~~~l~~~~~A~~~l~~al~-----l~-P~n~~~~~~l~~l~~~~~~~~~~~k~~y~k  327 (365)
                      +.+.+..      ..+++++|.+|..+|++++|+..|++++.     .+ |....+...++.+...+++..++. ..|.+
T Consensus       211 l~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~-~~~~~  289 (383)
T 3ulq_A          211 YSMAEAEKQPQLMGRTLYNIGLCKNSQSQYEDAIPYFKRAIAVFEESNILPSLPQAYFLITQIHYKLGKIDKAH-EYHSK  289 (383)
T ss_dssp             HHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGHHHHHHHHHHHHHHTTCHHHHH-HHHHH
T ss_pred             HHHHHHcCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHHCCCHHHHH-HHHHH
Confidence            8775433      25888888888888888888888888888     45 666777777787777666655433 33555


Q ss_pred             cc
Q 017811          328 IF  329 (365)
Q Consensus       328 mf  329 (365)
                      .+
T Consensus       290 al  291 (383)
T 3ulq_A          290 GM  291 (383)
T ss_dssp             HH
T ss_pred             HH
Confidence            44

>2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris}

Probab=99.10  E-value=4.1e-10  Score=88.94  Aligned_cols=101  Identities=20%  Similarity=0.119  Sum_probs=90.0

Q ss_pred             hhhHHHHHHHHhcCHHHHHHHHHHHHhCCCCCH---HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCc---HHHHHHHH
Q 017811          235 CHLNMAACLLKLKRYEEAIGQCSLVLGEDENNV---KALFRRGKARAELGQTDAAREDFLKAGKFAPED---KSIARELR  308 (365)
Q Consensus       235 ~~~nla~~~~kl~~~~~A~~~~~~aL~~~p~n~---ka~~~~g~a~~~l~~~~~A~~~l~~al~l~P~n---~~~~~~l~  308 (365)
                      +++++|.+++..|+|++|+..+.+++..+|++.   .+++.+|.++..+|+|++|+..|++++.++|++   ..+...++
T Consensus         4 ~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~la   83 (129)
T 2xev_A            4 TAYNVAFDALKNGKYDDASQLFLSFLELYPNGVYTPNALYWLGESYYATRNFQLAEAQFRDLVSRYPTHDKAAGGLLKLG   83 (129)
T ss_dssp             CHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHH
T ss_pred             HHHHHHHHHHHhCCHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHHCCCCcccHHHHHHHH
Confidence            488999999999999999999999999999998   899999999999999999999999999999999   88899999


Q ss_pred             HHHHHHHHHHHHHHHHHhcccCCCCCcc
Q 017811          309 LLAEHEKAVYKKQKEIYKGIFGPRPEPK  336 (365)
Q Consensus       309 ~l~~~~~~~~~~~k~~y~kmf~~~~~~~  336 (365)
                      .+....++..+.. ..|.+++...|+..
T Consensus        84 ~~~~~~g~~~~A~-~~~~~~~~~~p~~~  110 (129)
T 2xev_A           84 LSQYGEGKNTEAQ-QTLQQVATQYPGSD  110 (129)
T ss_dssp             HHHHHTTCHHHHH-HHHHHHHHHSTTSH
T ss_pred             HHHHHcCCHHHHH-HHHHHHHHHCCCCh
Confidence            9988777766544 55888877766544

>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe}

Probab=99.09  E-value=1.7e-09  Score=107.82  Aligned_cols=151  Identities=13%  Similarity=0.012  Sum_probs=111.5

Q ss_pred             HHhhhhhhhhhhhhhHHHHHHHHHHHHHhhccchhhh--------hhhhH---HHHHHH------hhchhhhHHHHHHHH
Q 017811          183 DRRKMDGNALFKEEKLEEAMQQYEMAIAYMGDDFMFQ--------LFGKY---RDMALA------VKNPCHLNMAACLLK  245 (365)
Q Consensus       183 ~~~k~~G~~~~~~~~y~~A~~~y~~al~~~~~~~~~~--------~~~~~---~~~~~~------~~~~~~~nla~~~~k  245 (365)
                      ..+...|..+++.|++++|+..|++++...|.+...-        ..+..   ......      -...+++++|.+|.+
T Consensus       306 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~  385 (597)
T 2xpi_A          306 DLLLCKADTLFVRSRFIDVLAITTKILEIDPYNLDVYPLHLASLHESGEKNKLYLISNDLVDRHPEKAVTWLAVGIYYLC  385 (597)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCCTTHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhcCHHHHHHHHHHHHHcCcccHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhCcccHHHHHHHHHHHHH
Confidence            3455678889999999999999999999887653310        00000   011111      113467888888888


Q ss_pred             hcCHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHHHHHHHHHHHHH
Q 017811          246 LKRYEEAIGQCSLVLGEDENNVKALFRRGKARAELGQTDAAREDFLKAGKFAPEDKSIARELRLLAEHEKAVYKKQKEIY  325 (365)
Q Consensus       246 l~~~~~A~~~~~~aL~~~p~n~ka~~~~g~a~~~l~~~~~A~~~l~~al~l~P~n~~~~~~l~~l~~~~~~~~~~~k~~y  325 (365)
                      .|++++|+..++++++++|.+..+|+.+|.+|...|++++|+..|++++.+.|++..+...+..+....++..+. ...|
T Consensus       386 ~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A-~~~~  464 (597)
T 2xpi_A          386 VNKISEARRYFSKSSTMDPQFGPAWIGFAHSFAIEGEHDQAISAYTTAARLFQGTHLPYLFLGMQHMQLGNILLA-NEYL  464 (597)
T ss_dssp             TTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTTTCSHHHHHHHHHHHHHTCHHHH-HHHH
T ss_pred             hccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccchHHHHHHHHHHHHcCCHHHH-HHHH
Confidence            888888888888888888888888888888888888888888888888888888888888888777766665544 4458


Q ss_pred             hcccCCCCC
Q 017811          326 KGIFGPRPE  334 (365)
Q Consensus       326 ~kmf~~~~~  334 (365)
                      .+|+...|.
T Consensus       465 ~~~~~~~~~  473 (597)
T 2xpi_A          465 QSSYALFQY  473 (597)
T ss_dssp             HHHHHHCCC
T ss_pred             HHHHHhCCC
Confidence            888766554

>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio}

Probab=99.09  E-value=2.4e-10  Score=105.44  Aligned_cols=142  Identities=13%  Similarity=0.035  Sum_probs=102.3

Q ss_pred             HHHHhhhhhhhhhhhhhHHHHHHHHHHHHHhhccchhhhhhhhHHHHHHHhhchhhhHHHHHHHHhcCHHHHHHHHHHHH
Q 017811          181 AADRRKMDGNALFKEEKLEEAMQQYEMAIAYMGDDFMFQLFGKYRDMALAVKNPCHLNMAACLLKLKRYEEAIGQCSLVL  260 (365)
Q Consensus       181 ~a~~~k~~G~~~~~~~~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~kl~~~~~A~~~~~~aL  260 (365)
                      .+..+...|+.+...|+|.+|+..|++|+.+.+.....           .....++.|+|.+|.. |++++|+.+|++++
T Consensus        75 ~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~-----------~~~a~~~~~lg~~~~~-g~~~~A~~~~~~Al  142 (307)
T 2ifu_A           75 AAKAFEQAGMMLKDLQRMPEAVQYIEKASVMYVENGTP-----------DTAAMALDRAGKLMEP-LDLSKAVHLYQQAA  142 (307)
T ss_dssp             HHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHHTTTCH-----------HHHHHHHHHHHHHHTT-TCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCH-----------HHHHHHHHHHHHHHHc-CCHHHHHHHHHHHH
Confidence            35566777888888888888888888888876432110           0124568899999988 99999999999999


Q ss_pred             hCCCCC------HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCcH------HHHHHHHHHHHHHHHHHHHHHHHHhcc
Q 017811          261 GEDENN------VKALFRRGKARAELGQTDAAREDFLKAGKFAPEDK------SIARELRLLAEHEKAVYKKQKEIYKGI  328 (365)
Q Consensus       261 ~~~p~n------~ka~~~~g~a~~~l~~~~~A~~~l~~al~l~P~n~------~~~~~l~~l~~~~~~~~~~~k~~y~km  328 (365)
                      .+.|..      ..+++++|.+|..+|+|++|+..|++++.+.|++.      .+...+..+...+++..++ ...|.+.
T Consensus       143 ~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~A-~~~~~~a  221 (307)
T 2ifu_A          143 AVFENEERLRQAAELIGKASRLLVRQQKFDEAAASLQKEKSMYKEMENYPTCYKKCIAQVLVQLHRADYVAA-QKCVRES  221 (307)
T ss_dssp             HHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHH-HHHHHHH
T ss_pred             HHHHhCCChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHcCCHHHH-HHHHHHH
Confidence            887653      67899999999999999999999999999876542      2333444454444555444 4457777


Q ss_pred             cCCCCCcc
Q 017811          329 FGPRPEPK  336 (365)
Q Consensus       329 f~~~~~~~  336 (365)
                      + ..|...
T Consensus       222 l-~~p~~~  228 (307)
T 2ifu_A          222 Y-SIPGFS  228 (307)
T ss_dssp             T-TSTTST
T ss_pred             h-CCCCCC
Confidence            7 666443

>3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A

Probab=99.08  E-value=3e-10  Score=103.79  Aligned_cols=136  Identities=10%  Similarity=-0.021  Sum_probs=105.7

Q ss_pred             HHHhhhhhhhhhhhhhHHHHHHHHHHHHHhhccchhhhhhhhHHHHHHHhhchhhhHHHHHHHHhcCHHHHHHHHHHHHh
Q 017811          182 ADRRKMDGNALFKEEKLEEAMQQYEMAIAYMGDDFMFQLFGKYRDMALAVKNPCHLNMAACLLKLKRYEEAIGQCSLVLG  261 (365)
Q Consensus       182 a~~~k~~G~~~~~~~~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~kl~~~~~A~~~~~~aL~  261 (365)
                      +.-+...|..++..++|++|+..|.+|+.+.+.....           .....++.|+|.+|..+|+|++|+.++.++|+
T Consensus       115 ~~~~~~l~~~~~~~~~~~~Ai~~~~~al~~~~~~~~~-----------~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~  183 (293)
T 3u3w_A          115 LQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDV-----------YQNLYIENAIANIYAENGYLKKGIDLFEQILK  183 (293)
T ss_dssp             HHHHHHHHHHHTTSSCHHHHHHHHHHHHHTCCCCSCT-----------THHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHcccCHHHHHHHHHHHHHHhcccccH-----------HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence            4455568888888899999999999999976543221           01234699999999999999999999999994


Q ss_pred             -------CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCc------HHHHHHHHHHHHHHHHHHHHHHHHHhcc
Q 017811          262 -------EDENNVKALFRRGKARAELGQTDAAREDFLKAGKFAPED------KSIARELRLLAEHEKAVYKKQKEIYKGI  328 (365)
Q Consensus       262 -------~~p~n~ka~~~~g~a~~~l~~~~~A~~~l~~al~l~P~n------~~~~~~l~~l~~~~~~~~~~~k~~y~km  328 (365)
                             ..+....+++++|.+|..+|+|++|+..+++++.+.+..      ..+...++.+...+++..++....|.+.
T Consensus       184 ~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~~A~~~~~~A  263 (293)
T 3u3w_A          184 QLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIGQLYYQRGECLRKLEYEEAEIEDAYKKA  263 (293)
T ss_dssp             HHHHSSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCTTHHHHHHHHHHHHHHTTCCHHHHHHHHHHH
T ss_pred             HHHhcccchhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHH
Confidence                   233446799999999999999999999999999987654      6778888888877774333444445544

>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A

Probab=99.07  E-value=9.3e-10  Score=90.43  Aligned_cols=105  Identities=16%  Similarity=-0.010  Sum_probs=93.6

Q ss_pred             chhhhHHHHHHHHhcCHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHH
Q 017811          233 NPCHLNMAACLLKLKRYEEAIGQCSLVLGEDENNVKALFRRGKARAELGQTDAAREDFLKAGKFAPEDKSIARELRLLAE  312 (365)
Q Consensus       233 ~~~~~nla~~~~kl~~~~~A~~~~~~aL~~~p~n~ka~~~~g~a~~~l~~~~~A~~~l~~al~l~P~n~~~~~~l~~l~~  312 (365)
                      ...+.++|.+++..|+|++|+..+.+++.++|.+..+++.+|.++..+|+|++|+..|++++.++|++..+...++.+..
T Consensus        13 ~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~a~~~~   92 (166)
T 1a17_A           13 AEELKTQANDYFKAKDYENAIKFYSQAIELNPSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKKYIKGYYRRAASNM   92 (166)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHH
Confidence            34589999999999999999999999999999999999999999999999999999999999999999999999999988


Q ss_pred             HHHHHHHHHHHHHhcccCCCCCcccc
Q 017811          313 HEKAVYKKQKEIYKGIFGPRPEPKQK  338 (365)
Q Consensus       313 ~~~~~~~~~k~~y~kmf~~~~~~~~~  338 (365)
                      ..++..+.. ..|.+.+...|.....
T Consensus        93 ~~~~~~~A~-~~~~~a~~~~p~~~~~  117 (166)
T 1a17_A           93 ALGKFRAAL-RDYETVVKVKPHDKDA  117 (166)
T ss_dssp             HTTCHHHHH-HHHHHHHHHSTTCHHH
T ss_pred             HhccHHHHH-HHHHHHHHhCCCCHHH
Confidence            877776554 5588888777755443

>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae}

Probab=99.07  E-value=1.3e-09  Score=106.01  Aligned_cols=129  Identities=10%  Similarity=0.045  Sum_probs=96.1

Q ss_pred             HHhhhhhhhhhhhhhHHHHHHHHHHHHHhhccchhhhh--------hhhHHHH---H---HHh---h------chhhhHH
Q 017811          183 DRRKMDGNALFKEEKLEEAMQQYEMAIAYMGDDFMFQL--------FGKYRDM---A---LAV---K------NPCHLNM  239 (365)
Q Consensus       183 ~~~k~~G~~~~~~~~y~~A~~~y~~al~~~~~~~~~~~--------~~~~~~~---~---~~~---~------~~~~~nl  239 (365)
                      ..+...|..++..|++.+|+..|.+++...|.+...-.        .+...+.   .   ..+   .      ..+++++
T Consensus       339 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l  418 (514)
T 2gw1_A          339 FPYIQLACLAYRENKFDDCETLFSEAKRKFPEAPEVPNFFAEILTDKNDFDKALKQYDLAIELENKLDGIYVGIAPLVGK  418 (514)
T ss_dssp             HHHHHHHHHTTTTTCHHHHHHHHHHHHHHSTTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSSSCSSCSHHHHHH
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHHcccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhhccchHHHHHHHHHHH
Confidence            34555666666666666666666666666654332100        0110000   0   000   0      1279999


Q ss_pred             HHHHHH---hcCHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHH
Q 017811          240 AACLLK---LKRYEEAIGQCSLVLGEDENNVKALFRRGKARAELGQTDAAREDFLKAGKFAPEDKSIARELRLLA  311 (365)
Q Consensus       240 a~~~~k---l~~~~~A~~~~~~aL~~~p~n~ka~~~~g~a~~~l~~~~~A~~~l~~al~l~P~n~~~~~~l~~l~  311 (365)
                      |.++..   +|++++|+..+++++.++|++..+++.+|.++..+|++++|+..|++++.++|++..+...+..+.
T Consensus       419 ~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~  493 (514)
T 2gw1_A          419 ATLLTRNPTVENFIEATNLLEKASKLDPRSEQAKIGLAQMKLQQEDIDEAITLFEESADLARTMEEKLQAITFAE  493 (514)
T ss_dssp             HHHHHTSCCTTHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSHHHHHHHHHHHH
T ss_pred             HHHHhhhhhcCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhccccHHHHHHHHHHH
Confidence            999999   999999999999999999999999999999999999999999999999999999999888776553

>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster}

Probab=99.06  E-value=8.6e-10  Score=104.71  Aligned_cols=125  Identities=12%  Similarity=0.064  Sum_probs=109.5

Q ss_pred             HHHHHHhhhhhhhhhhhhhHHHHHHHHHHHHHhhccchhhhhhhhHHHHHHHhhchhhhHHHHHHHHhcCHHHHHHHHHH
Q 017811          179 IGAADRRKMDGNALFKEEKLEEAMQQYEMAIAYMGDDFMFQLFGKYRDMALAVKNPCHLNMAACLLKLKRYEEAIGQCSL  258 (365)
Q Consensus       179 ~~~a~~~k~~G~~~~~~~~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~kl~~~~~A~~~~~~  258 (365)
                      ...+..+...|..++..|+|.+|+..|++++...|.+..             ....+++++|.+|..+|+|++|+.++++
T Consensus        45 ~~~~~~l~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~-------------~~~~~~~~lg~~~~~~g~~~~A~~~~~~  111 (411)
T 4a1s_A           45 SSMCLELALEGERLCNAGDCRAGVAFFQAAIQAGTEDLR-------------TLSAIYSQLGNAYFYLGDYNKAMQYHKH  111 (411)
T ss_dssp             HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCSCHH-------------HHHHHHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHhcccChh-------------HHHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence            456778889999999999999999999999999887532             1345699999999999999999999999


Q ss_pred             HHhC------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh------CCCcHHHHHHHHHHHHHHHH
Q 017811          259 VLGE------DENNVKALFRRGKARAELGQTDAAREDFLKAGKF------APEDKSIARELRLLAEHEKA  316 (365)
Q Consensus       259 aL~~------~p~n~ka~~~~g~a~~~l~~~~~A~~~l~~al~l------~P~n~~~~~~l~~l~~~~~~  316 (365)
                      ++.+      +|....+++.+|.+|..+|++++|+..|++++.+      .|....+...+..+....++
T Consensus       112 al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~  181 (411)
T 4a1s_A          112 DLTLAKSMNDRLGEAKSSGNLGNTLKVMGRFDEAAICCERHLTLARQLGDRLSEGRALYNLGNVYHAKGK  181 (411)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHccCchHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHcCc
Confidence            9988      6778899999999999999999999999999999      45556677788888777777

>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis}

Probab=99.06  E-value=1e-09  Score=82.83  Aligned_cols=59  Identities=12%  Similarity=0.018  Sum_probs=52.1

Q ss_pred             hhhHHHHHHHHhcCHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCcH
Q 017811          235 CHLNMAACLLKLKRYEEAIGQCSLVLGEDENNVKALFRRGKARAELGQTDAAREDFLKAGKFAPEDK  301 (365)
Q Consensus       235 ~~~nla~~~~kl~~~~~A~~~~~~aL~~~p~n~ka~~~~g~a~~~l~~~~~A~~~l~~al~l~P~n~  301 (365)
                      +++++|.||..+|++++|+.++++++.++|++..++++        +.+.+|+..|++++.++|++.
T Consensus        37 ~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~--------~~~~~a~~~~~~~~~~~p~~~   95 (99)
T 2kc7_A           37 AYYLMGNAYRKLGDWQKALNNYQSAIELNPDSPALQAR--------KMVMDILNFYNKDMYNQLEHH   95 (99)
T ss_dssp             HHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTHHHHH--------HHHHHHHHHHCCTTHHHHCCS
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHH--------HHHHHHHHHHHHHhccCcccc
Confidence            88999999999999999999999999999999998865        677888888988888888753

>3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus}

Probab=99.06  E-value=1.9e-09  Score=106.04  Aligned_cols=144  Identities=15%  Similarity=0.056  Sum_probs=109.7

Q ss_pred             HHHHHHHHHHhhhhhhhhhhhhhHHHHHHHHHHHHHhhccchhhhhhhhHHHHHHHhhchhhhHHHHHHHHhcCHHHHHH
Q 017811          175 VEERIGAADRRKMDGNALFKEEKLEEAMQQYEMAIAYMGDDFMFQLFGKYRDMALAVKNPCHLNMAACLLKLKRYEEAIG  254 (365)
Q Consensus       175 ~~e~~~~a~~~k~~G~~~~~~~~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~kl~~~~~A~~  254 (365)
                      ..+.++.+....+.+..+..+|+|++|+..|+++|.+.......    +     ......++.|||.+|..+|+|++|+.
T Consensus       302 v~~~l~~a~~~le~a~~~~~qg~~~eA~~l~~~aL~~~~~~lg~----~-----Hp~~a~~~~nLa~~y~~~g~~~eA~~  372 (490)
T 3n71_A          302 VKEMIQFSKDTLEKIDKARSEGLYHEVVKLCRECLEKQEPVFAD----T-----NLYVLRLLSIASEVLSYLQAYEEASH  372 (490)
T ss_dssp             HHHHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHTTTBCT----T-----SHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHhcCC----C-----CHHHHHHHHHHHHHHHHhcCHHHHHH
Confidence            34556677778888888889999999999999999987542110    0     01134569999999999999999999


Q ss_pred             HHHHHHhC-----CCCC---HHHHHHHHHHHHHcCCHHHHHHHHHHHHhh-----CCCcHHHHH---HHHHHHHHHHHHH
Q 017811          255 QCSLVLGE-----DENN---VKALFRRGKARAELGQTDAAREDFLKAGKF-----APEDKSIAR---ELRLLAEHEKAVY  318 (365)
Q Consensus       255 ~~~~aL~~-----~p~n---~ka~~~~g~a~~~l~~~~~A~~~l~~al~l-----~P~n~~~~~---~l~~l~~~~~~~~  318 (365)
                      ++.++|.+     .|++   ..+++++|.+|..+|+|++|+..|++|+.+     -|+++.+..   .+..++..++.++
T Consensus       373 ~~~~aL~i~~~~lG~~Hp~~a~~l~nLa~~~~~~G~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~~~~~l~~~~~e~~~~~  452 (490)
T 3n71_A          373 YARRMVDGYMKLYHHNNAQLGMAVMRAGLTNWHAGHIEVGHGMICKAYAILLVTHGPSHPITKDLEAMRMQTEMELRMFR  452 (490)
T ss_dssp             HHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTSHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHH
Confidence            99999964     3555   568999999999999999999999999985     566665554   4555555566666


Q ss_pred             HHHHHHHhcc
Q 017811          319 KKQKEIYKGI  328 (365)
Q Consensus       319 ~~~k~~y~km  328 (365)
                      +++.. |+++
T Consensus       453 ~ae~~-~~~~  461 (490)
T 3n71_A          453 QNEFM-YHKM  461 (490)
T ss_dssp             HHHHH-HHHH
T ss_pred             HHHHH-HHHH
Confidence            55544 5544

>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1

Probab=99.05  E-value=1.6e-09  Score=84.81  Aligned_cols=102  Identities=16%  Similarity=0.135  Sum_probs=91.1

Q ss_pred             chhhhHHHHHHHHhcCHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHH
Q 017811          233 NPCHLNMAACLLKLKRYEEAIGQCSLVLGEDENNVKALFRRGKARAELGQTDAAREDFLKAGKFAPEDKSIARELRLLAE  312 (365)
Q Consensus       233 ~~~~~nla~~~~kl~~~~~A~~~~~~aL~~~p~n~ka~~~~g~a~~~l~~~~~A~~~l~~al~l~P~n~~~~~~l~~l~~  312 (365)
                      ..+++.+|.++...|+|++|+..+.+++..+|.+..+++.+|.++..+|++++|+..|.+++.++|++..+...++.+..
T Consensus        12 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~   91 (131)
T 2vyi_A           12 AERLKTEGNEQMKVENFEAAVHFYGKAIELNPANAVYFCNRAAAYSKLGNYAGAVQDCERAICIDPAYSKAYGRMGLALS   91 (131)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHccCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhhchHHHHHHHHHHHhcCccCHHHHHHHHHHHH
Confidence            34689999999999999999999999999999999999999999999999999999999999999999999999999988


Q ss_pred             HHHHHHHHHHHHHhcccCCCCCc
Q 017811          313 HEKAVYKKQKEIYKGIFGPRPEP  335 (365)
Q Consensus       313 ~~~~~~~~~k~~y~kmf~~~~~~  335 (365)
                      ..++..+.. ..|.+.+...|..
T Consensus        92 ~~~~~~~A~-~~~~~~~~~~p~~  113 (131)
T 2vyi_A           92 SLNKHVEAV-AYYKKALELDPDN  113 (131)
T ss_dssp             HTTCHHHHH-HHHHHHHHHSTTC
T ss_pred             HhCCHHHHH-HHHHHHHhcCccc
Confidence            777766554 4588877766644

>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A

Probab=99.03  E-value=2.2e-09  Score=83.21  Aligned_cols=102  Identities=24%  Similarity=0.249  Sum_probs=90.4

Q ss_pred             hhhhHHHHHHHHhcCHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHH
Q 017811          234 PCHLNMAACLLKLKRYEEAIGQCSLVLGEDENNVKALFRRGKARAELGQTDAAREDFLKAGKFAPEDKSIARELRLLAEH  313 (365)
Q Consensus       234 ~~~~nla~~~~kl~~~~~A~~~~~~aL~~~p~n~ka~~~~g~a~~~l~~~~~A~~~l~~al~l~P~n~~~~~~l~~l~~~  313 (365)
                      .+++++|.++...|++++|+..+.+++..+|.+..+++.+|.++...|++++|+..|++++.++|.+..+...+..+...
T Consensus        10 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~   89 (125)
T 1na0_A           10 EAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYK   89 (125)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHH
Confidence            45899999999999999999999999999999999999999999999999999999999999999999999999988777


Q ss_pred             HHHHHHHHHHHHhcccCCCCCcc
Q 017811          314 EKAVYKKQKEIYKGIFGPRPEPK  336 (365)
Q Consensus       314 ~~~~~~~~k~~y~kmf~~~~~~~  336 (365)
                      .++..+. ...|.+++...|...
T Consensus        90 ~~~~~~A-~~~~~~~~~~~~~~~  111 (125)
T 1na0_A           90 QGDYDEA-IEYYQKALELDPNNA  111 (125)
T ss_dssp             TTCHHHH-HHHHHHHHHHCTTCH
T ss_pred             hcCHHHH-HHHHHHHHHhCCCcH
Confidence            7666544 455888877666543

>3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A

Probab=99.02  E-value=8.5e-10  Score=100.79  Aligned_cols=107  Identities=16%  Similarity=0.140  Sum_probs=89.9

Q ss_pred             HHHHhhhhhhhhhhhhhHHHHHHHHHHHHHhhccchhhhhhhhHHHHHHHhhchhhhHHHHHHHHhcCHHHHHHHHHHHH
Q 017811          181 AADRRKMDGNALFKEEKLEEAMQQYEMAIAYMGDDFMFQLFGKYRDMALAVKNPCHLNMAACLLKLKRYEEAIGQCSLVL  260 (365)
Q Consensus       181 ~a~~~k~~G~~~~~~~~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~kl~~~~~A~~~~~~aL  260 (365)
                      .+..+...|..++..|+|++|+..|++|+.........          ......+++|+|.+|.++|+|++|+.++++++
T Consensus       154 ~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~----------~~~~~~~~~nlg~~y~~~~~y~~A~~~~~~al  223 (293)
T 3u3w_A          154 NLYIENAIANIYAENGYLKKGIDLFEQILKQLEALHDN----------EEFDVKVRYNHAKALYLDSRYEESLYQVNKAI  223 (293)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSSCC----------HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcccc----------hhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence            35568899999999999999999999999866432110          12235579999999999999999999999999


Q ss_pred             hCCCCC------HHHHHHHHHHHHHcC-CHHHHHHHHHHHHhhC
Q 017811          261 GEDENN------VKALFRRGKARAELG-QTDAAREDFLKAGKFA  297 (365)
Q Consensus       261 ~~~p~n------~ka~~~~g~a~~~l~-~~~~A~~~l~~al~l~  297 (365)
                      ++.+.+      ..+|+++|.++..+| ++++|+..|++|+.+.
T Consensus       224 ~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~~A~~~~~~Al~i~  267 (293)
T 3u3w_A          224 EISCRINSMALIGQLYYQRGECLRKLEYEEAEIEDAYKKASFFF  267 (293)
T ss_dssp             HHHHHTTBCTTHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHH
T ss_pred             HHHHHcCcHHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHH
Confidence            876544      789999999999999 5799999999999864

>2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646}

Probab=99.02  E-value=1.5e-09  Score=99.11  Aligned_cols=133  Identities=10%  Similarity=-0.039  Sum_probs=96.8

Q ss_pred             hhhhhhhhhhhhhHHHHHHHHHHHHHhhccchhhhhhhhHHHHHHHhhchhhhHHHHHHHHhcCHHHHHHHHHHHH---h
Q 017811          185 RKMDGNALFKEEKLEEAMQQYEMAIAYMGDDFMFQLFGKYRDMALAVKNPCHLNMAACLLKLKRYEEAIGQCSLVL---G  261 (365)
Q Consensus       185 ~k~~G~~~~~~~~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~kl~~~~~A~~~~~~aL---~  261 (365)
                      +...|..+...|+|++|+..|.+|+.+.+.....           .....+++++|.+|..+|+|++|+.++++++   +
T Consensus       118 ~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~-----------~~~~~~~~~lg~~y~~~~~~~~A~~~~~kal~~~~  186 (293)
T 2qfc_A          118 QYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDV-----------YQNLYIENAIANIYAENGYLKKGIDLFEQILKQLE  186 (293)
T ss_dssp             HHHHHHHHHTSSCHHHHHHHHHHHHTTCCCSSCT-----------THHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHhcCCCHHHHHHHHHHHHHHHhcCCch-----------HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH
Confidence            3345555666666666666666666654432110           0013479999999999999999999999999   4


Q ss_pred             CCCCCH----HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC------cHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Q 017811          262 EDENNV----KALFRRGKARAELGQTDAAREDFLKAGKFAPE------DKSIARELRLLAEHEKAVYKKQKEIYKGI  328 (365)
Q Consensus       262 ~~p~n~----ka~~~~g~a~~~l~~~~~A~~~l~~al~l~P~------n~~~~~~l~~l~~~~~~~~~~~k~~y~km  328 (365)
                      ..|++.    .+++++|.+|..+|+|++|+..|++++.+.++      -..+...++.+...+++..++....|.+.
T Consensus       187 ~~~~~~~~~~~~~~nlg~~y~~~~~y~~Al~~~~kal~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~Ai~~~~~~A  263 (293)
T 2qfc_A          187 ALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIGQLYYQRGECLRKLEYEEAEIEDAYKKA  263 (293)
T ss_dssp             HSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCSSHHHHHHHHHHHHHHTTCCHHHHHHHHHHH
T ss_pred             hcCccccchHHHHHhHHHHHHHHhhHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHH
Confidence            556543    79999999999999999999999999998643      15677778888877776665544445544

>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis}

Probab=99.02  E-value=1.9e-09  Score=101.98  Aligned_cols=109  Identities=17%  Similarity=0.206  Sum_probs=95.3

Q ss_pred             HHHHHHhhhhhhhhhhhhhHHHHHHHHHHHHHhhccchhhhhhhhHHHHHHHhhchhhhHHHHHHHHhcCHHHHHHHHHH
Q 017811          179 IGAADRRKMDGNALFKEEKLEEAMQQYEMAIAYMGDDFMFQLFGKYRDMALAVKNPCHLNMAACLLKLKRYEEAIGQCSL  258 (365)
Q Consensus       179 ~~~a~~~k~~G~~~~~~~~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~kl~~~~~A~~~~~~  258 (365)
                      ...+..+...|..+...|+|++|+..|.+|+.+.+....           ......++.|+|.||..+|++++|+.++++
T Consensus       181 ~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~-----------~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~  249 (383)
T 3ulq_A          181 IRLLQCHSLFATNFLDLKQYEDAISHFQKAYSMAEAEKQ-----------PQLMGRTLYNIGLCKNSQSQYEDAIPYFKR  249 (383)
T ss_dssp             HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTC-----------HHHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHcCC-----------hHHHHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence            345677888999999999999999999999999875321           112345799999999999999999999999


Q ss_pred             HHh-----CC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC
Q 017811          259 VLG-----ED-ENNVKALFRRGKARAELGQTDAAREDFLKAGKFAP  298 (365)
Q Consensus       259 aL~-----~~-p~n~ka~~~~g~a~~~l~~~~~A~~~l~~al~l~P  298 (365)
                      ++.     .+ |....+++.+|.++..+|++++|+..|++++.+.+
T Consensus       250 al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~  295 (383)
T 3ulq_A          250 AIAVFEESNILPSLPQAYFLITQIHYKLGKIDKAHEYHSKGMAYSQ  295 (383)
T ss_dssp             HHHHHHHTTCGGGHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHhhccchhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHH
Confidence            999     57 88899999999999999999999999999999854

>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio}

Probab=99.02  E-value=1.2e-09  Score=100.58  Aligned_cols=109  Identities=14%  Similarity=0.042  Sum_probs=92.6

Q ss_pred             HHHHHhhhhhhhhhhhhhHHHHHHHHHHHHHhhccchhhhhhhhHHHHHHHhhchhhhHHHHHHHHhcCHHHHHHHHHHH
Q 017811          180 GAADRRKMDGNALFKEEKLEEAMQQYEMAIAYMGDDFMFQLFGKYRDMALAVKNPCHLNMAACLLKLKRYEEAIGQCSLV  259 (365)
Q Consensus       180 ~~a~~~k~~G~~~~~~~~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~kl~~~~~A~~~~~~a  259 (365)
                      ..+..+...|..+.. |+|++|+..|++|+.+.+.....           .....++.|+|.+|.++|+|++|+.+|+++
T Consensus       114 ~~a~~~~~lg~~~~~-g~~~~A~~~~~~Al~~~~~~~~~-----------~~~~~~~~~lg~~~~~~g~~~~A~~~~~~a  181 (307)
T 2ifu_A          114 TAAMALDRAGKLMEP-LDLSKAVHLYQQAAAVFENEERL-----------RQAAELIGKASRLLVRQQKFDEAAASLQKE  181 (307)
T ss_dssp             HHHHHHHHHHHHHTT-TCHHHHHHHHHHHHHHHHHTTCH-----------HHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHc-CCHHHHHHHHHHHHHHHHhCCCh-----------hHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence            346678889999988 99999999999999998753110           112457999999999999999999999999


Q ss_pred             HhCCCCC------HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCcH
Q 017811          260 LGEDENN------VKALFRRGKARAELGQTDAAREDFLKAGKFAPEDK  301 (365)
Q Consensus       260 L~~~p~n------~ka~~~~g~a~~~l~~~~~A~~~l~~al~l~P~n~  301 (365)
                      +.+.|.+      ..+++.+|.++..+|++++|+..|++++ ++|...
T Consensus       182 l~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al-~~p~~~  228 (307)
T 2ifu_A          182 KSMYKEMENYPTCYKKCIAQVLVQLHRADYVAAQKCVRESY-SIPGFS  228 (307)
T ss_dssp             HHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHT-TSTTST
T ss_pred             HHHHHHcCChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHh-CCCCCC
Confidence            9986644      3588999999999999999999999999 999754

>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens}

Probab=99.02  E-value=9.2e-10  Score=99.76  Aligned_cols=108  Identities=16%  Similarity=-0.039  Sum_probs=90.4

Q ss_pred             HHHHHhhhhhhhhhhhhhHHHHHHHHHHHHHhhccchhhhhhhhHHHHHHHhhchhhhHHHHHHHHhcCHHHHHHHHHHH
Q 017811          180 GAADRRKMDGNALFKEEKLEEAMQQYEMAIAYMGDDFMFQLFGKYRDMALAVKNPCHLNMAACLLKLKRYEEAIGQCSLV  259 (365)
Q Consensus       180 ~~a~~~k~~G~~~~~~~~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~kl~~~~~A~~~~~~a  259 (365)
                      ..+..+...|..++..|+|.+|+..|.+++.+........         ......++.++|.++..+|++++|+.+++++
T Consensus       109 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~---------~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a  179 (311)
T 3nf1_A          109 AVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKD---------HPDVAKQLNNLALLCQNQGKYEEVEYYYQRA  179 (311)
T ss_dssp             HHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTT---------CHHHHHHHHHHHHHHHTTTCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhcCCC---------ChHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence            4456778899999999999999999999999862110000         0012446999999999999999999999999


Q ss_pred             HhC--------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Q 017811          260 LGE--------DENNVKALFRRGKARAELGQTDAAREDFLKAGKF  296 (365)
Q Consensus       260 L~~--------~p~n~ka~~~~g~a~~~l~~~~~A~~~l~~al~l  296 (365)
                      +.+        +|....+++.+|.+|..+|++++|+..|++++.+
T Consensus       180 ~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~  224 (311)
T 3nf1_A          180 LEIYQTKLGPDDPNVAKTKNNLASCYLKQGKFKQAETLYKEILTR  224 (311)
T ss_dssp             HHHHHHTSCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHhCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence            988        7778889999999999999999999999999985

>1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1

Probab=99.02  E-value=1.7e-09  Score=88.58  Aligned_cols=104  Identities=14%  Similarity=0.127  Sum_probs=89.2

Q ss_pred             hhhhHHHHHHHHHHHHHhhccchhhhhhhhHHHHHHHhhchhhhHHHHHHHHhc---CHHHHHHHHHHHHhCC-C-CCHH
Q 017811          194 KEEKLEEAMQQYEMAIAYMGDDFMFQLFGKYRDMALAVKNPCHLNMAACLLKLK---RYEEAIGQCSLVLGED-E-NNVK  268 (365)
Q Consensus       194 ~~~~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~kl~---~~~~A~~~~~~aL~~~-p-~n~k  268 (365)
                      .......+.+.|.+.+...+.+                 ..+.+|+|.|+.+.+   +.++++..++.+++.+ | .+..
T Consensus        10 ~~~~l~~~~~~y~~e~~~~~~~-----------------~~~~F~ya~~Lv~S~~~~~~~~gI~lLe~ll~~~~p~~~rd   72 (152)
T 1pc2_A           10 SVEDLLKFEKKFQSEKAAGSVS-----------------KSTQFEYAWCLVRSKYNDDIRKGIVLLEELLPKGSKEEQRD   72 (152)
T ss_dssp             CHHHHHHHHHHHHHHHHTTCCC-----------------HHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSCHHHHHH
T ss_pred             CHHHHHHHHHHHHHHHccCCCc-----------------HHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCccchHH
Confidence            3455677888888888765543                 235899999999988   7779999999999998 7 6799


Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHH
Q 017811          269 ALFRRGKARAELGQTDAAREDFLKAGKFAPEDKSIARELRLLAEHE  314 (365)
Q Consensus       269 a~~~~g~a~~~l~~~~~A~~~l~~al~l~P~n~~~~~~l~~l~~~~  314 (365)
                      ++|.+|.+++.+++|++|+.+++++|+++|+|..+......+..+.
T Consensus        73 ~lY~LAv~~~kl~~Y~~A~~y~~~lL~ieP~n~QA~~Lk~~ie~~~  118 (152)
T 1pc2_A           73 YVFYLAVGNYRLKEYEKALKYVRGLLQTEPQNNQAKELERLIDKAM  118 (152)
T ss_dssp             HHHHHHHHHHHTSCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHH
Confidence            9999999999999999999999999999999999998888776544

>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens}

Probab=99.02  E-value=1.3e-09  Score=98.78  Aligned_cols=141  Identities=16%  Similarity=0.106  Sum_probs=112.7

Q ss_pred             HHHHHhhhhhhhhhhhhhHHHHHHHHHHHHHhhccchhhhhhhhHHHHHHHhhchhhhHHHHHHHHhcCHHHHHHHHHHH
Q 017811          180 GAADRRKMDGNALFKEEKLEEAMQQYEMAIAYMGDDFMFQLFGKYRDMALAVKNPCHLNMAACLLKLKRYEEAIGQCSLV  259 (365)
Q Consensus       180 ~~a~~~k~~G~~~~~~~~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~kl~~~~~A~~~~~~a  259 (365)
                      ..+..+...|..++..|+|++|+..|.+++.+........         ......++.++|.+|..+|++++|+.++.++
T Consensus        67 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~---------~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a  137 (311)
T 3nf1_A           67 DVATMLNILALVYRDQNKYKDAANLLNDALAIREKTLGKD---------HPAVAATLNNLAVLYGKRGKYKEAEPLCKRA  137 (311)
T ss_dssp             HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCTT---------CHHHHHHHHHHHHHHHTTTCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCC---------ChHHHHHHHHHHHHHHHcCcHHHHHHHHHHH
Confidence            4456678899999999999999999999999863210000         0112446999999999999999999999999


Q ss_pred             HhCC--------CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh--------CCCcHHHHHHHHHHHHHHHHHHHHHHH
Q 017811          260 LGED--------ENNVKALFRRGKARAELGQTDAAREDFLKAGKF--------APEDKSIARELRLLAEHEKAVYKKQKE  323 (365)
Q Consensus       260 L~~~--------p~n~ka~~~~g~a~~~l~~~~~A~~~l~~al~l--------~P~n~~~~~~l~~l~~~~~~~~~~~k~  323 (365)
                      +.+.        |....+++.+|.++..+|++++|+..|++++.+        .|....+...+..+....++..++.. 
T Consensus       138 ~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~-  216 (311)
T 3nf1_A          138 LEIREKVLGKDHPDVAKQLNNLALLCQNQGKYEEVEYYYQRALEIYQTKLGPDDPNVAKTKNNLASCYLKQGKFKQAET-  216 (311)
T ss_dssp             HHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHTSCTTCHHHHHHHHHHHHHHHHHTCHHHHHH-
T ss_pred             HHHHHHhcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHcCCHHHHHH-
Confidence            9874        667789999999999999999999999999998        67677788888888777777665443 


Q ss_pred             HHhcccC
Q 017811          324 IYKGIFG  330 (365)
Q Consensus       324 ~y~kmf~  330 (365)
                      .|.+++.
T Consensus       217 ~~~~al~  223 (311)
T 3nf1_A          217 LYKEILT  223 (311)
T ss_dssp             HHHHHHH
T ss_pred             HHHHHHH
Confidence            3666553

>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis}

Probab=99.02  E-value=2.1e-09  Score=101.69  Aligned_cols=141  Identities=13%  Similarity=0.065  Sum_probs=102.7

Q ss_pred             HHHHHhhhhhhhhhhhhhHHHHHHHHHHHHHhhccchhhhhhhhHHHHHHHhhchhhhHHHHHHHHhcCHHHHHHHHHHH
Q 017811          180 GAADRRKMDGNALFKEEKLEEAMQQYEMAIAYMGDDFMFQLFGKYRDMALAVKNPCHLNMAACLLKLKRYEEAIGQCSLV  259 (365)
Q Consensus       180 ~~a~~~k~~G~~~~~~~~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~kl~~~~~A~~~~~~a  259 (365)
                      ..+..+...|..++..|++..|+..|.+|+.+.+.....          ......++.++|.+|..+|+|++|+.++.++
T Consensus       139 ~~a~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~----------~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~a  208 (378)
T 3q15_A          139 EKAEFHFKVAEAYYHMKQTHVSMYHILQALDIYQNHPLY----------SIRTIQSLFVIAGNYDDFKHYDKALPHLEAA  208 (378)
T ss_dssp             HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSTTC----------HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHhCCCc----------hhhHHHHHHHHHHHHHHhCCHHHHHHHHHHH
Confidence            455666677777777777777777777777776543211          0113456889999999999999999999998


Q ss_pred             HhCCC------CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh-----hCCCcHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Q 017811          260 LGEDE------NNVKALFRRGKARAELGQTDAAREDFLKAGK-----FAPEDKSIARELRLLAEHEKAVYKKQKEIYKGI  328 (365)
Q Consensus       260 L~~~p------~n~ka~~~~g~a~~~l~~~~~A~~~l~~al~-----l~P~n~~~~~~l~~l~~~~~~~~~~~k~~y~km  328 (365)
                      +.+.+      ....+++++|.+|..+|++++|+..|++++.     .+|....+...++.+...+++..++. ..|.+.
T Consensus       209 l~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~-~~~~~a  287 (378)
T 3q15_A          209 LELAMDIQNDRFIAISLLNIANSYDRSGDDQMAVEHFQKAAKVSREKVPDLLPKVLFGLSWTLCKAGQTQKAF-QFIEEG  287 (378)
T ss_dssp             HHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHTTCHHHHH-HHHHHH
T ss_pred             HHHHHHcCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhCChhHHHHHHHHHHHHHHCCCHHHHH-HHHHHH
Confidence            87632      2246888899999999999999999999998     67777777888888877776665443 446665


Q ss_pred             cCC
Q 017811          329 FGP  331 (365)
Q Consensus       329 f~~  331 (365)
                      +..
T Consensus       288 l~~  290 (378)
T 3q15_A          288 LDH  290 (378)
T ss_dssp             HHH
T ss_pred             HHH
Confidence            543

>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis}

Probab=99.01  E-value=3.1e-09  Score=100.49  Aligned_cols=109  Identities=14%  Similarity=-0.016  Sum_probs=95.8

Q ss_pred             HHHHHhhhhhhhhhhhhhHHHHHHHHHHHHHhhccchhhhhhhhHHHHHHHhhchhhhHHHHHHHHhcCHHHHHHHHHHH
Q 017811          180 GAADRRKMDGNALFKEEKLEEAMQQYEMAIAYMGDDFMFQLFGKYRDMALAVKNPCHLNMAACLLKLKRYEEAIGQCSLV  259 (365)
Q Consensus       180 ~~a~~~k~~G~~~~~~~~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~kl~~~~~A~~~~~~a  259 (365)
                      ..+..+...|..++..|+|++|+..|.+|+.+.+....           ......++.|+|.||..+|++++|+.++.++
T Consensus       180 ~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~-----------~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~a  248 (378)
T 3q15_A          180 RTIQSLFVIAGNYDDFKHYDKALPHLEAALELAMDIQN-----------DRFIAISLLNIANSYDRSGDDQMAVEHFQKA  248 (378)
T ss_dssp             HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTC-----------HHHHHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCC-----------HHHHHHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence            45777889999999999999999999999998754211           1123557999999999999999999999999


Q ss_pred             Hh-----CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC
Q 017811          260 LG-----EDENNVKALFRRGKARAELGQTDAAREDFLKAGKFAPE  299 (365)
Q Consensus       260 L~-----~~p~n~ka~~~~g~a~~~l~~~~~A~~~l~~al~l~P~  299 (365)
                      +.     .+|....+++.+|.++..+|++++|+..+++++.+.+.
T Consensus       249 l~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~  293 (378)
T 3q15_A          249 AKVSREKVPDLLPKVLFGLSWTLCKAGQTQKAFQFIEEGLDHITA  293 (378)
T ss_dssp             HHHHHHHCGGGHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCT
T ss_pred             HHHHHhhCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHH
Confidence            99     88989999999999999999999999999999999654

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*

Probab=99.01  E-value=4.6e-09  Score=105.37  Aligned_cols=138  Identities=14%  Similarity=0.056  Sum_probs=119.7

Q ss_pred             HHHhhhhhhhhhhhhh----------HHHHHHHHHHHHHhhccchhhhhhhhHHHHHHHhhchhhhHHHHHHHHhc--CH
Q 017811          182 ADRRKMDGNALFKEEK----------LEEAMQQYEMAIAYMGDDFMFQLFGKYRDMALAVKNPCHLNMAACLLKLK--RY  249 (365)
Q Consensus       182 a~~~k~~G~~~~~~~~----------y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~kl~--~~  249 (365)
                      ...+..+|..+...++          |.+|+..|.+++...|.++.                 ++++++.++.+++  +|
T Consensus        63 ~taW~~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~~~pK~y~-----------------aW~hR~w~l~~l~~~~~  125 (567)
T 1dce_A           63 ATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVNPKSYG-----------------TWHHRCWLLSRLPEPNW  125 (567)
T ss_dssp             HHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHCTTCHH-----------------HHHHHHHHHHTCSSCCH
T ss_pred             HHHHHHHHHHHHhcccccchhhhhhhHHHHHHHHHHHHHhCCCCHH-----------------HHHHHHHHHHHcccccH
Confidence            3456778888888888          99999999999999999865                 4999999999999  78


Q ss_pred             HHHHHHHHHHHhCCCCCHHHHHHHHHHHHHcC-CHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHH-------------H
Q 017811          250 EEAIGQCSLVLGEDENNVKALFRRGKARAELG-QTDAAREDFLKAGKFAPEDKSIARELRLLAEHE-------------K  315 (365)
Q Consensus       250 ~~A~~~~~~aL~~~p~n~ka~~~~g~a~~~l~-~~~~A~~~l~~al~l~P~n~~~~~~l~~l~~~~-------------~  315 (365)
                      ++++.+|+++|++||.|..||+.|+.++..++ .++++++++.++++++|+|..+......+....             .
T Consensus       126 ~~el~~~~k~l~~d~~N~~aW~~R~~~l~~l~~~~~~el~~~~~~I~~~p~n~saW~~r~~ll~~l~~~~~~~~~~~~~~  205 (567)
T 1dce_A          126 ARELELCARFLEADERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNFSNYSSWHYRSCLLPQLHPQPDSGPQGRLPE  205 (567)
T ss_dssp             HHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTCCCHHHHHHHHHTTTTTTCCCHHHHHHHHHHHHHHSCCCCSSSCCSSCH
T ss_pred             HHHHHHHHHHHhhccccccHHHHHHHHHHHcCCChHHHHHHHHHHHHHCCCCccHHHHHHHHHHhhcccccccccccccH
Confidence            99999999999999999999999999999999 999999999999999999999999998887764             2


Q ss_pred             HHHHHHHHHHhcccCCCCCcc
Q 017811          316 AVYKKQKEIYKGIFGPRPEPK  336 (365)
Q Consensus       316 ~~~~~~k~~y~kmf~~~~~~~  336 (365)
                      ...+.+-..|.+.+...|...
T Consensus       206 ~~~~eel~~~~~ai~~~P~~~  226 (567)
T 1dce_A          206 NVLLKELELVQNAFFTDPNDQ  226 (567)
T ss_dssp             HHHHHHHHHHHHHHHHCSSCS
T ss_pred             HHHHHHHHHHHHHHhhCCCCc
Confidence            334556666777776666543

>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.01  E-value=1.9e-09  Score=86.69  Aligned_cols=102  Identities=17%  Similarity=0.050  Sum_probs=91.0

Q ss_pred             hhhhHHHHHHHHhcCHHHHHHHHHHHHhCCCCC---HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCcHHHHHHHHHH
Q 017811          234 PCHLNMAACLLKLKRYEEAIGQCSLVLGEDENN---VKALFRRGKARAELGQTDAAREDFLKAGKFAPEDKSIARELRLL  310 (365)
Q Consensus       234 ~~~~nla~~~~kl~~~~~A~~~~~~aL~~~p~n---~ka~~~~g~a~~~l~~~~~A~~~l~~al~l~P~n~~~~~~l~~l  310 (365)
                      ..++++|.+++..|+|++|+..+++++.++|++   ..+++.+|.++..+++|++|+..|++++.++|++..+...+..+
T Consensus        29 ~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~  108 (148)
T 2dba_A           29 EQLRKEGNELFKCGDYGGALAAYTQALGLDATPQDQAVLHRNRAACHLKLEDYDKAETEASKAIEKDGGDVKALYRRSQA  108 (148)
T ss_dssp             HHHHHHHHHHHTTTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSCCHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhCCHHHHHHHHHHHHHHcccchHHHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCccCHHHHHHHHHH
Confidence            358899999999999999999999999999988   89999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHhcccCCCCCcc
Q 017811          311 AEHEKAVYKKQKEIYKGIFGPRPEPK  336 (365)
Q Consensus       311 ~~~~~~~~~~~k~~y~kmf~~~~~~~  336 (365)
                      ....+++.+. ...|.+.+...|...
T Consensus       109 ~~~~~~~~~A-~~~~~~al~~~p~~~  133 (148)
T 2dba_A          109 LEKLGRLDQA-VLDLQRCVSLEPKNK  133 (148)
T ss_dssp             HHHHTCHHHH-HHHHHHHHHHCSSCH
T ss_pred             HHHcCCHHHH-HHHHHHHHHcCCCcH
Confidence            8887777655 455888877666543

>2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7

Probab=98.99  E-value=4e-09  Score=97.07  Aligned_cols=132  Identities=7%  Similarity=-0.107  Sum_probs=102.7

Q ss_pred             HHhhhhhhhhhhhhhHHHHHHHHHHHHHhhccchhhhhhhhHHHHHHHhhchhhhHHHHHHHHhcCHHHHHHHHHHHHhC
Q 017811          183 DRRKMDGNALFKEEKLEEAMQQYEMAIAYMGDDFMFQLFGKYRDMALAVKNPCHLNMAACLLKLKRYEEAIGQCSLVLGE  262 (365)
Q Consensus       183 ~~~k~~G~~~~~~~~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~kl~~~~~A~~~~~~aL~~  262 (365)
                      ..+...|..+...|++++|+..|++++.+.|.+..                .++.++|.++.+.|++++|+..|+++++.
T Consensus       100 ~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~----------------~~~~~~~~~~~~~~~~~~A~~~~~~a~~~  163 (308)
T 2ond_A          100 LLYFAYADYEESRMKYEKVHSIYNRLLAIEDIDPT----------------LVYIQYMKFARRAEGIKSGRMIFKKARED  163 (308)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHTSSSSCTH----------------HHHHHHHHHHHHHHCHHHHHHHHHHHHTS
T ss_pred             HHHHHHHHHHHhcCCHHHHHHHHHHHHhccccCcc----------------HHHHHHHHHHHHhcCHHHHHHHHHHHHhc
Confidence            34567778888889999999999999998876532                14888888888889999999999999988


Q ss_pred             CCCCHHHHHHHHHHHHH-cCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHHHHHHHHHHHHHhcccCC
Q 017811          263 DENNVKALFRRGKARAE-LGQTDAAREDFLKAGKFAPEDKSIARELRLLAEHEKAVYKKQKEIYKGIFGP  331 (365)
Q Consensus       263 ~p~n~ka~~~~g~a~~~-l~~~~~A~~~l~~al~l~P~n~~~~~~l~~l~~~~~~~~~~~k~~y~kmf~~  331 (365)
                      +|.+..+|...+..... +|++++|+..|+++++++|++..+...+..+....++.. ..+..|.+.+..
T Consensus       164 ~p~~~~~~~~~a~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~g~~~-~A~~~~~~al~~  232 (308)
T 2ond_A          164 ARTRHHVYVTAALMEYYCSKDKSVAFKIFELGLKKYGDIPEYVLAYIDYLSHLNEDN-NTRVLFERVLTS  232 (308)
T ss_dssp             TTCCTHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCHH-HHHHHHHHHHHS
T ss_pred             CCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCCHH-HHHHHHHHHHhc
Confidence            88887777766555433 688999999999999988888888888777765555443 456678888765

>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus}

Probab=98.99  E-value=1.9e-09  Score=98.06  Aligned_cols=122  Identities=16%  Similarity=0.097  Sum_probs=103.4

Q ss_pred             HHHhhhhhhhhhhhhhHHHHHHHHHHHHHhhccchhhhhhhhHHHHHHHhhchhhhHHHHHHHHhcCHHHHHHHHHHHHh
Q 017811          182 ADRRKMDGNALFKEEKLEEAMQQYEMAIAYMGDDFMFQLFGKYRDMALAVKNPCHLNMAACLLKLKRYEEAIGQCSLVLG  261 (365)
Q Consensus       182 a~~~k~~G~~~~~~~~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~kl~~~~~A~~~~~~aL~  261 (365)
                      +..+...|..++..|+|.+|+..|++++...|.+..             ....++.++|.+|...|++++|+..+.+++.
T Consensus         5 ~~~l~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~-------------~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~   71 (338)
T 3ro2_A            5 CLELALEGERLCKSGDCRAGVSFFEAAVQVGTEDLK-------------TLSAIYSQLGNAYFYLHDYAKALEYHHHDLT   71 (338)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCSCHH-------------HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhccHHHHHHHHHHHHhhCcccHH-------------HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence            456778899999999999999999999999877532             1345699999999999999999999999988


Q ss_pred             C------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCc------HHHHHHHHHHHHHHHH
Q 017811          262 E------DENNVKALFRRGKARAELGQTDAAREDFLKAGKFAPED------KSIARELRLLAEHEKA  316 (365)
Q Consensus       262 ~------~p~n~ka~~~~g~a~~~l~~~~~A~~~l~~al~l~P~n------~~~~~~l~~l~~~~~~  316 (365)
                      +      .|....+++.+|.++..+|++++|+..|++++.+.|..      ..+...+..+....++
T Consensus        72 ~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~~~  138 (338)
T 3ro2_A           72 LARTIGDQLGEAKASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGK  138 (338)
T ss_dssp             HHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHH
T ss_pred             HhhcccccHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHcCc
Confidence            7      55668899999999999999999999999999987643      2366667777666666

>1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1

Probab=98.98  E-value=1.1e-08  Score=91.82  Aligned_cols=126  Identities=14%  Similarity=0.005  Sum_probs=62.4

Q ss_pred             HHHhhhhhhhhhhhhhHHHHHHHHHHHHHhhccchhh--h------h----hhhHHHHH-------HHhhchhhhHHHHH
Q 017811          182 ADRRKMDGNALFKEEKLEEAMQQYEMAIAYMGDDFMF--Q------L----FGKYRDMA-------LAVKNPCHLNMAAC  242 (365)
Q Consensus       182 a~~~k~~G~~~~~~~~y~~A~~~y~~al~~~~~~~~~--~------~----~~~~~~~~-------~~~~~~~~~nla~~  242 (365)
                      +..+...|..++..+++++|+..|+++++  +.+...  .      .    .+...+..       ..-...+++++|.+
T Consensus         6 ~~a~~~lg~~~~~~~~~~~A~~~~~~a~~--~~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~~~~a~~~lg~~   83 (273)
T 1ouv_A            6 PKELVGLGAKSYKEKDFTQAKKYFEKACD--LKENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLNYSNGCHLLGNL   83 (273)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHH--TTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHhCCCHHHHHHHHHHHHH--CCCHHHHHHHHHHHHcCCCcCCCHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence            44566677777777777777777777776  222110  0      0    00000000       00012235555555


Q ss_pred             HHH----hcCHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHH----cCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHH
Q 017811          243 LLK----LKRYEEAIGQCSLVLGEDENNVKALFRRGKARAE----LGQTDAAREDFLKAGKFAPEDKSIARELRLLAEH  313 (365)
Q Consensus       243 ~~k----l~~~~~A~~~~~~aL~~~p~n~ka~~~~g~a~~~----l~~~~~A~~~l~~al~l~P~n~~~~~~l~~l~~~  313 (365)
                      |..    .+++++|+.+++++++.+  ++.+++.+|.+|..    .+++++|+.+|+++++++  +..+...+..+...
T Consensus        84 ~~~g~~~~~~~~~A~~~~~~a~~~~--~~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~~--~~~a~~~lg~~~~~  158 (273)
T 1ouv_A           84 YYSGQGVSQNTNKALQYYSKACDLK--YAEGCASLGGIYHDGKVVTRDFKKAVEYFTKACDLN--DGDGCTILGSLYDA  158 (273)
T ss_dssp             HHHTSSSCCCHHHHHHHHHHHHHTT--CHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHTT--CHHHHHHHHHHHHH
T ss_pred             HhCCCCcccCHHHHHHHHHHHHHcC--CccHHHHHHHHHHcCCCcccCHHHHHHHHHHHHhcC--cHHHHHHHHHHHHc
Confidence            555    555555555555555542  55555555555555    555555555555555543  34444444444433

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*

Probab=98.97  E-value=1e-08  Score=102.92  Aligned_cols=144  Identities=8%  Similarity=-0.052  Sum_probs=119.4

Q ss_pred             HHHHHHHhhhhhhhhhhhhhH-HHHHHHHHHHHHhhccchhhhhhhhHHHHHHHhhchhhhHHHHHHHHhcC--------
Q 017811          178 RIGAADRRKMDGNALFKEEKL-EEAMQQYEMAIAYMGDDFMFQLFGKYRDMALAVKNPCHLNMAACLLKLKR--------  248 (365)
Q Consensus       178 ~~~~a~~~k~~G~~~~~~~~y-~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~kl~~--------  248 (365)
                      +++.-.........+.+.++| ++|+..|.++|.++|+++.                 ++++++.++.++++        
T Consensus        24 k~~~y~~~~~~~~~~~~~~~~~eeal~~~~~~l~~nP~~~t-----------------aW~~R~~~l~~l~~~~~~~~~~   86 (567)
T 1dce_A           24 KLKLYQSATQAVFQKRQAGELDESVLELTSQILGANPDFAT-----------------LWNCRREVLQHLETEKSPEESA   86 (567)
T ss_dssp             HHHHHHHHHHHHHHHHHTTCCSHHHHHHHHHHHHHCTTCHH-----------------HHHHHHHHHHHHHTTSCHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHCchhHH-----------------HHHHHHHHHHhcccccchhhhh
Confidence            333333333344444555555 4789999999999999755                 49999999999999        


Q ss_pred             --HHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHcC--CHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHHHHHHHHHHHH
Q 017811          249 --YEEAIGQCSLVLGEDENNVKALFRRGKARAELG--QTDAAREDFLKAGKFAPEDKSIARELRLLAEHEKAVYKKQKEI  324 (365)
Q Consensus       249 --~~~A~~~~~~aL~~~p~n~ka~~~~g~a~~~l~--~~~~A~~~l~~al~l~P~n~~~~~~l~~l~~~~~~~~~~~k~~  324 (365)
                        +++++.+++++|+.+|.+..||+.|+.++..++  +|++|+..+.++++++|.|-.++...+.+....+...+.+-+.
T Consensus        87 ~~~~~eL~~~~~~l~~~pK~y~aW~hR~w~l~~l~~~~~~~el~~~~k~l~~d~~N~~aW~~R~~~l~~l~~~~~~el~~  166 (567)
T 1dce_A           87 ALVKAELGFLESCLRVNPKSYGTWHHRCWLLSRLPEPNWARELELCARFLEADERNFHCWDYRRFVAAQAAVAPAEELAF  166 (567)
T ss_dssp             HHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTCSSCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTCCCHHHHHHH
T ss_pred             hhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcccccHHHHHHHHHHHHhhccccccHHHHHHHHHHHcCCChHHHHHH
Confidence              999999999999999999999999999999999  7799999999999999999999999988877766344567777


Q ss_pred             HhcccCCCCCcccc
Q 017811          325 YKGIFGPRPEPKQK  338 (365)
Q Consensus       325 y~kmf~~~~~~~~~  338 (365)
                      +.++....+.+...
T Consensus       167 ~~~~I~~~p~n~sa  180 (567)
T 1dce_A          167 TDSLITRNFSNYSS  180 (567)
T ss_dssp             HHTTTTTTCCCHHH
T ss_pred             HHHHHHHCCCCccH
Confidence            89999888866544

>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens}

Probab=98.97  E-value=2e-09  Score=101.35  Aligned_cols=122  Identities=16%  Similarity=0.097  Sum_probs=104.4

Q ss_pred             HHHhhhhhhhhhhhhhHHHHHHHHHHHHHhhccchhhhhhhhHHHHHHHhhchhhhHHHHHHHHhcCHHHHHHHHHHHHh
Q 017811          182 ADRRKMDGNALFKEEKLEEAMQQYEMAIAYMGDDFMFQLFGKYRDMALAVKNPCHLNMAACLLKLKRYEEAIGQCSLVLG  261 (365)
Q Consensus       182 a~~~k~~G~~~~~~~~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~kl~~~~~A~~~~~~aL~  261 (365)
                      +..+...|..++..|+|.+|+..|++++...|.+..             ....++.++|.+|..+|+|++|+.++++++.
T Consensus         9 ~~~l~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~-------------~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~   75 (406)
T 3sf4_A            9 CLELALEGERLCKSGDCRAGVSFFEAAVQVGTEDLK-------------TLSAIYSQLGNAYFYLHDYAKALEYHHHDLT   75 (406)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCSCHH-------------HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhccHHHHHHHHHHHHhcCcccHH-------------HHHHHHHHHHHHHHHhcCHHHHHHHHHHHHH
Confidence            456778999999999999999999999999887532             1345699999999999999999999999987


Q ss_pred             C------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCc------HHHHHHHHHHHHHHHH
Q 017811          262 E------DENNVKALFRRGKARAELGQTDAAREDFLKAGKFAPED------KSIARELRLLAEHEKA  316 (365)
Q Consensus       262 ~------~p~n~ka~~~~g~a~~~l~~~~~A~~~l~~al~l~P~n------~~~~~~l~~l~~~~~~  316 (365)
                      +      .|....+++.+|.++..+|++++|+..|++++.+.|..      ..+...++.+....++
T Consensus        76 ~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~  142 (406)
T 3sf4_A           76 LARTIGDQLGEAKASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGK  142 (406)
T ss_dssp             HHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHhccccHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHcCC
Confidence            7      45668899999999999999999999999999998753      3366677777776666

>2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7

Probab=98.95  E-value=1.4e-08  Score=93.29  Aligned_cols=119  Identities=12%  Similarity=0.082  Sum_probs=101.3

Q ss_pred             HHHHHHHHHHHHhhccchhhhhhhhHHHHHHHhhchhhhHHHHHHHH-------hcCH-------HHHHHHHHHHHh-CC
Q 017811          199 EEAMQQYEMAIAYMGDDFMFQLFGKYRDMALAVKNPCHLNMAACLLK-------LKRY-------EEAIGQCSLVLG-ED  263 (365)
Q Consensus       199 ~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~k-------l~~~-------~~A~~~~~~aL~-~~  263 (365)
                      .+|+..|++|+...|.+..                 +++++|..+..       +|++       ++|+..++++++ ++
T Consensus        33 ~~a~~~~~~al~~~p~~~~-----------------~w~~~~~~~~~~~~~l~~~g~~~~~~~~~~~A~~~~~rAl~~~~   95 (308)
T 2ond_A           33 KRVMFAYEQCLLVLGHHPD-----------------IWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLL   95 (308)
T ss_dssp             HHHHHHHHHHHHHHTTCHH-----------------HHHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHHHHTTTT
T ss_pred             HHHHHHHHHHHHHcCCCHH-----------------HHHHHHHHHHHhchhhhhccchhhcccchHHHHHHHHHHHHHhC
Confidence            7899999999999998754                 48888888764       5775       899999999999 79


Q ss_pred             CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCcHH-HHHHHHHHHHHHHHHHHHHHHHHhcccCCCCCc
Q 017811          264 ENNVKALFRRGKARAELGQTDAAREDFLKAGKFAPEDKS-IARELRLLAEHEKAVYKKQKEIYKGIFGPRPEP  335 (365)
Q Consensus       264 p~n~ka~~~~g~a~~~l~~~~~A~~~l~~al~l~P~n~~-~~~~l~~l~~~~~~~~~~~k~~y~kmf~~~~~~  335 (365)
                      |++..+|+.+|.++..+|++++|...|+++++++|.+.. +...+..+..+.+... ..+..|.+.+...|..
T Consensus        96 p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~-~A~~~~~~a~~~~p~~  167 (308)
T 2ond_A           96 KKNMLLYFAYADYEESRMKYEKVHSIYNRLLAIEDIDPTLVYIQYMKFARRAEGIK-SGRMIFKKAREDARTR  167 (308)
T ss_dssp             TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSSSSCTHHHHHHHHHHHHHHHCHH-HHHHHHHHHHTSTTCC
T ss_pred             cccHHHHHHHHHHHHhcCCHHHHHHHHHHHHhccccCccHHHHHHHHHHHHhcCHH-HHHHHHHHHHhcCCCC
Confidence            999999999999999999999999999999999999876 7888888776666554 4567799988876643

>2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana}

Probab=98.95  E-value=5.6e-10  Score=104.71  Aligned_cols=103  Identities=10%  Similarity=-0.011  Sum_probs=56.9

Q ss_pred             HhhhhhhhhhhhhhHHHHHHHHHHHHHhhccchhhhhhhhHHHHHHHhhchhhhHHHHHHHHhcCHHHHHHHHHHHHhCC
Q 017811          184 RRKMDGNALFKEEKLEEAMQQYEMAIAYMGDDFMFQLFGKYRDMALAVKNPCHLNMAACLLKLKRYEEAIGQCSLVLGED  263 (365)
Q Consensus       184 ~~k~~G~~~~~~~~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~kl~~~~~A~~~~~~aL~~~  263 (365)
                      .+...|..+++.++|.+|+..|++||.+.|.+.                 .+|+++|.+|+.+|+|++|+.+++++++++
T Consensus       232 ~~~nla~~~~~~g~~~~A~~~~~~al~~~p~~~-----------------~a~~~lg~a~~~~g~~~~A~~~l~~al~l~  294 (338)
T 2if4_A          232 CHLNIAACLIKLKRYDEAIGHCNIVLTEEEKNP-----------------KALFRRGKAKAELGQMDSARDDFRKAQKYA  294 (338)
T ss_dssp             HHHHHHHHHHTTTCCHHHHHHHHHHHHHCTTCH-----------------HHHHHHHHHHHTTTCHHHHHHHHHHTTC--
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH-----------------HHHHHHHHHHHHcCCHHHHHHHHHHHHHHC
Confidence            677899999999999999999999999998763                 359999999999999999999999999999


Q ss_pred             CCCHHHHHHHHHH-HHHcCCHHHHHHHHHHHHhhCCCcHHH
Q 017811          264 ENNVKALFRRGKA-RAELGQTDAAREDFLKAGKFAPEDKSI  303 (365)
Q Consensus       264 p~n~ka~~~~g~a-~~~l~~~~~A~~~l~~al~l~P~n~~~  303 (365)
                      |++..++..++.+ ....+.++.+...|++++.+.|++...
T Consensus       295 p~~~~a~~~L~~l~~~~~~~~~~a~~~~~~~l~~~p~~~~~  335 (338)
T 2if4_A          295 PDDKAIRRELRALAEQEKALYQKQKEMYKGIFKGKDEGGAK  335 (338)
T ss_dssp             -----------------------------------------
T ss_pred             CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCCCCC
Confidence            9999999999998 445677888999999999999987643

>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A

Probab=98.94  E-value=2.6e-09  Score=83.65  Aligned_cols=99  Identities=14%  Similarity=0.077  Sum_probs=88.1

Q ss_pred             hhhhHHHHHHHHhcCHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCc-------HHHHHH
Q 017811          234 PCHLNMAACLLKLKRYEEAIGQCSLVLGEDENNVKALFRRGKARAELGQTDAAREDFLKAGKFAPED-------KSIARE  306 (365)
Q Consensus       234 ~~~~nla~~~~kl~~~~~A~~~~~~aL~~~p~n~ka~~~~g~a~~~l~~~~~A~~~l~~al~l~P~n-------~~~~~~  306 (365)
                      .+++++|.++...|+|++|+..+.+++..+|.++.+++.+|.++..+|++++|+..|++++.+.|++       ..+...
T Consensus         5 ~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~   84 (131)
T 1elr_A            5 LKEKELGNDAYKKKDFDTALKHYDKAKELDPTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKAYAR   84 (131)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHhccHHHHHHHHHHHHhhccccchhHHHHHHHHHH
Confidence            3589999999999999999999999999999999999999999999999999999999999999877       888888


Q ss_pred             HHHHHHHHHHHHHHHHHHHhcccCCCC
Q 017811          307 LRLLAEHEKAVYKKQKEIYKGIFGPRP  333 (365)
Q Consensus       307 l~~l~~~~~~~~~~~k~~y~kmf~~~~  333 (365)
                      ++.+....++..+. ...|.+++...+
T Consensus        85 la~~~~~~~~~~~A-~~~~~~~~~~~~  110 (131)
T 1elr_A           85 IGNSYFKEEKYKDA-IHFYNKSLAEHR  110 (131)
T ss_dssp             HHHHHHHTTCHHHH-HHHHHHHHHHCC
T ss_pred             HHHHHHHhccHHHH-HHHHHHHHHhCC
Confidence            88888777776655 455888877655

>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens}

Probab=98.94  E-value=4.4e-09  Score=98.95  Aligned_cols=138  Identities=13%  Similarity=-0.003  Sum_probs=110.4

Q ss_pred             HHHHhhhhhhhhhhhhhHHHHHHHHHHHHHhhccchhhhhhhhHHHHHHHhhchhhhHHHHHHHHhcCHHHHHHHHHHHH
Q 017811          181 AADRRKMDGNALFKEEKLEEAMQQYEMAIAYMGDDFMFQLFGKYRDMALAVKNPCHLNMAACLLKLKRYEEAIGQCSLVL  260 (365)
Q Consensus       181 ~a~~~k~~G~~~~~~~~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~kl~~~~~A~~~~~~aL  260 (365)
                      .+..+...|..++..|+|++|+..|.+++.+.+.....           .....++.++|.+|..+|++++|+.++++++
T Consensus       186 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~-----------~~~~~~~~~la~~~~~~g~~~~A~~~~~~al  254 (406)
T 3sf4_A          186 QGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDK-----------AAERRAYSNLGNAYIFLGEFETASEYYKKTL  254 (406)
T ss_dssp             HHHHHHHHHHHHHHHTBHHHHHHHHHHHHHHHHHTTCH-----------HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcCCc-----------HHHHHHHHHHHHHHHHcCChHHHHHHHHHHH
Confidence            34567788999999999999999999999998763221           1124469999999999999999999999999


Q ss_pred             hCCCCC------HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCc------HHHHHHHHHHHHHHHHHHHHHHHHHhcc
Q 017811          261 GEDENN------VKALFRRGKARAELGQTDAAREDFLKAGKFAPED------KSIARELRLLAEHEKAVYKKQKEIYKGI  328 (365)
Q Consensus       261 ~~~p~n------~ka~~~~g~a~~~l~~~~~A~~~l~~al~l~P~n------~~~~~~l~~l~~~~~~~~~~~k~~y~km  328 (365)
                      .+.|..      ..+++.+|.++..+|++++|+..|++++.+.+..      ..+...++.+....++..++. ..|.+.
T Consensus       255 ~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~-~~~~~a  333 (406)
T 3sf4_A          255 LLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELNDRIGEGRACWSLGNAYTALGNHDQAM-HFAEKH  333 (406)
T ss_dssp             HHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHH-HHHHHH
T ss_pred             HHHHhCcCchHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCCHHHHH-HHHHHH
Confidence            887766      7899999999999999999999999999986643      456667777777666655443 446655


Q ss_pred             cC
Q 017811          329 FG  330 (365)
Q Consensus       329 f~  330 (365)
                      +.
T Consensus       334 l~  335 (406)
T 3sf4_A          334 LE  335 (406)
T ss_dssp             HH
T ss_pred             HH
Confidence            43

>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2

Probab=98.94  E-value=4.8e-09  Score=95.56  Aligned_cols=100  Identities=11%  Similarity=0.004  Sum_probs=90.6

Q ss_pred             hhhHHHHHHHHhcCHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHH
Q 017811          235 CHLNMAACLLKLKRYEEAIGQCSLVLGEDENNVKALFRRGKARAELGQTDAAREDFLKAGKFAPEDKSIARELRLLAEHE  314 (365)
Q Consensus       235 ~~~nla~~~~kl~~~~~A~~~~~~aL~~~p~n~ka~~~~g~a~~~l~~~~~A~~~l~~al~l~P~n~~~~~~l~~l~~~~  314 (365)
                      .+.++|.++++.|+|++|+..+++++.++|++..+++.+|.+|..+|+|++|+.+|+++++++|++..+...++.+....
T Consensus         6 ~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~   85 (281)
T 2c2l_A            6 ELKEQGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAHFFLGQCQLEM   85 (281)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSCTTCHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc
Confidence            58899999999999999999999999999999999999999999999999999999999999999999999999998888


Q ss_pred             HHHHHHHHHHHhcccCCCCCc
Q 017811          315 KAVYKKQKEIYKGIFGPRPEP  335 (365)
Q Consensus       315 ~~~~~~~k~~y~kmf~~~~~~  335 (365)
                      +++.++... |.+.+...|+.
T Consensus        86 g~~~~A~~~-~~~al~l~p~~  105 (281)
T 2c2l_A           86 ESYDEAIAN-LQRAYSLAKEQ  105 (281)
T ss_dssp             TCHHHHHHH-HHHHHHHHHHT
T ss_pred             CCHHHHHHH-HHHHHHhCccc
Confidence            877665544 77777665544

>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens}

Probab=98.92  E-value=7.3e-09  Score=100.19  Aligned_cols=123  Identities=14%  Similarity=0.139  Sum_probs=72.4

Q ss_pred             HHhhhhhhhhhhhhhHHHHHHHHHHHHHhhccchhhhh-hh-h-------------------------HHHHH-------
Q 017811          183 DRRKMDGNALFKEEKLEEAMQQYEMAIAYMGDDFMFQL-FG-K-------------------------YRDMA-------  228 (365)
Q Consensus       183 ~~~k~~G~~~~~~~~y~~A~~~y~~al~~~~~~~~~~~-~~-~-------------------------~~~~~-------  228 (365)
                      ..+...|..+...|++.+|+..|.+|++..|.+...-. .+ .                         .....       
T Consensus       248 ~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~  327 (472)
T 4g1t_A          248 DVLRSAAKFYRRKDEPDKAIELLKKALEYIPNNAYLHCQIGCCYRAKVFQVMNLRENGMYGKRKLLELIGHAVAHLKKAD  327 (472)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHC------CHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHcCchHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhHHHHHHHHHHHh
Confidence            34667899999999999999999999999998643200 00 0                         00000       


Q ss_pred             --HHhhchhhhHHHHHHHHhcCHHHHHHHHHHHHhCCCCCHH---HHHHHHHH-HHHcCCHHHHHHHHHHHHhhCCCcHH
Q 017811          229 --LAVKNPCHLNMAACLLKLKRYEEAIGQCSLVLGEDENNVK---ALFRRGKA-RAELGQTDAAREDFLKAGKFAPEDKS  302 (365)
Q Consensus       229 --~~~~~~~~~nla~~~~kl~~~~~A~~~~~~aL~~~p~n~k---a~~~~g~a-~~~l~~~~~A~~~l~~al~l~P~n~~  302 (365)
                        ......++.++|.+|..+|+|++|+.+|+++|.++|++..   .++++|.. +..+|++++|+..|+++++++|++..
T Consensus       328 ~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~kaL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ai~~y~kal~i~~~~~~  407 (472)
T 4g1t_A          328 EANDNLFRVCSILASLHALADQYEEAEYYFQKEFSKELTPVAKQLLHLRYGNFQLYQMKCEDKAIHHFIEGVKINQKSRE  407 (472)
T ss_dssp             HHCTTTCCCHHHHHHHHHHTTCHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHHSCCCCHH
T ss_pred             hcCCchhhhhhhHHHHHHHhccHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCcccHH
Confidence              0011234556666666666666666666666666654432   34445443 33556666666666666666666554


Q ss_pred             HHH
Q 017811          303 IAR  305 (365)
Q Consensus       303 ~~~  305 (365)
                      ...
T Consensus       408 ~~~  410 (472)
T 4g1t_A          408 KEK  410 (472)
T ss_dssp             HHH
T ss_pred             HHH
Confidence            433

>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1}

Probab=98.92  E-value=4.2e-09  Score=89.60  Aligned_cols=137  Identities=15%  Similarity=0.094  Sum_probs=104.2

Q ss_pred             HHHHhhhhhhhhhhhhhHHHHHHHHHHHHHhhccchhhhhhhhHHHHHHHhhchhhhHHHHHHHHhcCHHHHHHHHHHHH
Q 017811          181 AADRRKMDGNALFKEEKLEEAMQQYEMAIAYMGDDFMFQLFGKYRDMALAVKNPCHLNMAACLLKLKRYEEAIGQCSLVL  260 (365)
Q Consensus       181 ~a~~~k~~G~~~~~~~~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~kl~~~~~A~~~~~~aL  260 (365)
                      .+..+...|..++..|+|.+|+..|.+++.+......           ......++.++|.+|..+|++++|+.++.+++
T Consensus        25 ~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~-----------~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al   93 (203)
T 3gw4_A           25 ASGARFMLGYVYAFMDRFDEARASFQALQQQAQKSGD-----------HTAEHRALHQVGMVERMAGNWDAARRCFLEER   93 (203)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCC-----------HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHcCC-----------cHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence            4667888999999999999999999999998754211           11134569999999999999999999999999


Q ss_pred             hC---CC----CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC--cH----HHHHHHHHHHHHHHHHHHHHHHHHhc
Q 017811          261 GE---DE----NNVKALFRRGKARAELGQTDAAREDFLKAGKFAPE--DK----SIARELRLLAEHEKAVYKKQKEIYKG  327 (365)
Q Consensus       261 ~~---~p----~n~ka~~~~g~a~~~l~~~~~A~~~l~~al~l~P~--n~----~~~~~l~~l~~~~~~~~~~~k~~y~k  327 (365)
                      .+   .+    ....+++.+|.++..+|++++|+..+++++.+.+.  +.    .+...+..+....++..+.. ..+.+
T Consensus        94 ~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~-~~~~~  172 (203)
T 3gw4_A           94 ELLASLPEDPLAASANAYEVATVALHFGDLAGARQEYEKSLVYAQQADDQVAIACAFRGLGDLAQQEKNLLEAQ-QHWLR  172 (203)
T ss_dssp             HHHHHSCCCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHH-HHHHH
T ss_pred             HHHHHcCccHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHCcCHHHHH-HHHHH
Confidence            87   33    33578999999999999999999999999987432  22    22355666666665555443 33444


Q ss_pred             cc
Q 017811          328 IF  329 (365)
Q Consensus       328 mf  329 (365)
                      .+
T Consensus       173 al  174 (203)
T 3gw4_A          173 AR  174 (203)
T ss_dssp             HH
T ss_pred             HH
Confidence            43

>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans}

Probab=98.91  E-value=6.9e-10  Score=86.95  Aligned_cols=96  Identities=9%  Similarity=0.092  Sum_probs=79.8

Q ss_pred             HhcCHHHHHHHHHHHHhC---CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHHHHHHHHH
Q 017811          245 KLKRYEEAIGQCSLVLGE---DENNVKALFRRGKARAELGQTDAAREDFLKAGKFAPEDKSIARELRLLAEHEKAVYKKQ  321 (365)
Q Consensus       245 kl~~~~~A~~~~~~aL~~---~p~n~ka~~~~g~a~~~l~~~~~A~~~l~~al~l~P~n~~~~~~l~~l~~~~~~~~~~~  321 (365)
                      .+|++++|+..+++++++   +|+++.+++.+|.+|..+|+|++|+..|+++++++|++..+...++.+....++..+..
T Consensus         2 ~~g~~~~A~~~~~~al~~~~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~   81 (117)
T 3k9i_A            2 VLGLEAQAVPYYEKAIASGLQGKDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQFPNHQALRVFYAMVLYNLGRYEQGV   81 (117)
T ss_dssp             -----CCCHHHHHHHHSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHH
T ss_pred             CCCcHHHHHHHHHHHHHcCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHcCCHHHHH
Confidence            468999999999999999   69999999999999999999999999999999999999999999999988888877655


Q ss_pred             HHHHhcccCCCCCccccchh
Q 017811          322 KEIYKGIFGPRPEPKQKKNW  341 (365)
Q Consensus       322 k~~y~kmf~~~~~~~~~~~~  341 (365)
                      . .|.+.+...|.......|
T Consensus        82 ~-~~~~al~~~p~~~~~~~~  100 (117)
T 3k9i_A           82 E-LLLKIIAETSDDETIQSY  100 (117)
T ss_dssp             H-HHHHHHHHHCCCHHHHHT
T ss_pred             H-HHHHHHHhCCCcHHHHHH
Confidence            4 488887776665544333

>2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646}

Probab=98.91  E-value=4.1e-08  Score=89.52  Aligned_cols=139  Identities=13%  Similarity=0.001  Sum_probs=109.8

Q ss_pred             HHHHHHhhhhhhhhhhhhhHHHHHHHHHHHHHhhccchhhhhhhhHHHHHHHhhchhhhHHHHHHHHhcCHHHHHHHHHH
Q 017811          179 IGAADRRKMDGNALFKEEKLEEAMQQYEMAIAYMGDDFMFQLFGKYRDMALAVKNPCHLNMAACLLKLKRYEEAIGQCSL  258 (365)
Q Consensus       179 ~~~a~~~k~~G~~~~~~~~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~kl~~~~~A~~~~~~  258 (365)
                      ......+...+..++..|+|++|+..|.+++...+.....           ......++++|.++...|++++|+.++.+
T Consensus        72 ~~~~~~l~~~~~~~~~~~~y~~A~~~~~~~l~~~~~~~~~-----------~~~~~~~~~~~~~~~~~~~~~~A~~~~~~  140 (293)
T 2qfc_A           72 IERKKQFKDQVIMLCKQKRYKEIYNKVWNELKKEEYHPEF-----------QQFLQWQYYVAAYVLKKVDYEYCILELKK  140 (293)
T ss_dssp             HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCCCHHH-----------HHHHHHHHHHHHHHHTSSCHHHHHHHHHH
T ss_pred             hhHHHHHHHHHHHHHHhhhHHHHHHHHHHHhccccCChhH-----------HHHHHHHHHHHHHHhcCCCHHHHHHHHHH
Confidence            3456677889999999999999999999999987653211           11233477899999999999999999999


Q ss_pred             HHhCCCCC------HHHHHHHHHHHHHcCCHHHHHHHHHHHH---hhCCCcH----HHHHHHHHHHHHHHHHHHHHHHHH
Q 017811          259 VLGEDENN------VKALFRRGKARAELGQTDAAREDFLKAG---KFAPEDK----SIARELRLLAEHEKAVYKKQKEIY  325 (365)
Q Consensus       259 aL~~~p~n------~ka~~~~g~a~~~l~~~~~A~~~l~~al---~l~P~n~----~~~~~l~~l~~~~~~~~~~~k~~y  325 (365)
                      ++.+.+.+      ..+++.+|.+|..+|+|++|+..|++++   +..|++.    .+...++.+...++++.++..- |
T Consensus       141 al~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~kal~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~Al~~-~  219 (293)
T 2qfc_A          141 LLNQQLTGIDVYQNLYIENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQ-V  219 (293)
T ss_dssp             HHTTCCCSSCTTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHH-H
T ss_pred             HHHHHhcCCchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCccccchHHHHHhHHHHHHHHhhHHHHHHH-H
Confidence            99876544      6799999999999999999999999999   5566643    4667788887777777655443 5


Q ss_pred             hccc
Q 017811          326 KGIF  329 (365)
Q Consensus       326 ~kmf  329 (365)
                      .+.+
T Consensus       220 ~kal  223 (293)
T 2qfc_A          220 NKAI  223 (293)
T ss_dssp             HHHH
T ss_pred             HHHH
Confidence            5554

>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus}

Probab=98.90  E-value=7.2e-09  Score=83.92  Aligned_cols=107  Identities=21%  Similarity=0.140  Sum_probs=90.0

Q ss_pred             HHHhhhhhhhhhhhhhHHHHHHHHHHHHHhhccchhhhhhhhHHHHHHHhhchhhhHHHHHHHHhcCHHHHHHHHHHHHh
Q 017811          182 ADRRKMDGNALFKEEKLEEAMQQYEMAIAYMGDDFMFQLFGKYRDMALAVKNPCHLNMAACLLKLKRYEEAIGQCSLVLG  261 (365)
Q Consensus       182 a~~~k~~G~~~~~~~~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~kl~~~~~A~~~~~~aL~  261 (365)
                      +..+...|..++..|+|.+|+..|.+++.+.+....           ......++.++|.++..+|++++|+.++.+++.
T Consensus        49 ~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~-----------~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~  117 (164)
T 3ro3_A           49 RIAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKD-----------RAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLA  117 (164)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTC-----------HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCC-----------cHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence            456778999999999999999999999998765321           112345699999999999999999999999997


Q ss_pred             CCC------CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC
Q 017811          262 EDE------NNVKALFRRGKARAELGQTDAAREDFLKAGKFAPE  299 (365)
Q Consensus       262 ~~p------~n~ka~~~~g~a~~~l~~~~~A~~~l~~al~l~P~  299 (365)
                      +.+      ....+++.+|.++..+|++++|+..+++++.+...
T Consensus       118 ~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~  161 (164)
T 3ro3_A          118 IAQELKDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLEISRE  161 (164)
T ss_dssp             HHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTT
T ss_pred             HHHHccchHhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHH
Confidence            632      23578999999999999999999999999987654

>3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A*

Probab=98.90  E-value=7.3e-08  Score=89.73  Aligned_cols=136  Identities=14%  Similarity=0.047  Sum_probs=113.5

Q ss_pred             Hhhhhhhhhhhhhh----------HHHHHHHHHHHHHhhccchhhhhhhhHHHHHHHhhchhhhHHHHHHHHhc--CHHH
Q 017811          184 RRKMDGNALFKEEK----------LEEAMQQYEMAIAYMGDDFMFQLFGKYRDMALAVKNPCHLNMAACLLKLK--RYEE  251 (365)
Q Consensus       184 ~~k~~G~~~~~~~~----------y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~kl~--~~~~  251 (365)
                      .+.-++..+...+.          +.+++..+..+|...|.++.                 ++++++.++.+++  .|++
T Consensus        66 aWn~Rr~iL~~l~~~~~~~~~~~~l~~EL~~~~~~L~~~PKny~-----------------aW~hR~wlL~~l~~~~~~~  128 (331)
T 3dss_A           66 LWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVNPKSYG-----------------TWHHRCWLLSRLPEPNWAR  128 (331)
T ss_dssp             HHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTTCHH-----------------HHHHHHHHHHHCSSCCHHH
T ss_pred             HHHHHHHHHHHhcccccchhhhHHHHHHHHHHHHHHHhCCCCHH-----------------HHHHHHHHHhccCcccHHH
Confidence            34445555555444          78999999999999999865                 4999999999999  4999


Q ss_pred             HHHHHHHHHhCCCCCHHHHHHHHHHHHHcCC-HHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHHH-------------HH
Q 017811          252 AIGQCSLVLGEDENNVKALFRRGKARAELGQ-TDAAREDFLKAGKFAPEDKSIARELRLLAEHEK-------------AV  317 (365)
Q Consensus       252 A~~~~~~aL~~~p~n~ka~~~~g~a~~~l~~-~~~A~~~l~~al~l~P~n~~~~~~l~~l~~~~~-------------~~  317 (365)
                      ++.+|+++|++||.|..||+.++.++..++. +++++..+.++++++|+|..+......+.....             ..
T Consensus       129 EL~~~~k~l~~dprNy~AW~~R~~vl~~l~~~~~eel~~~~~~I~~~p~N~SAW~~R~~ll~~l~~~~~~~~~~~~~~~~  208 (331)
T 3dss_A          129 ELELCARFLEADERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNFSNYSSWHYRSCLLPQLHPQPDSGPQGRLPENV  208 (331)
T ss_dssp             HHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHHSCCC------CCCHHH
T ss_pred             HHHHHHHHHHhCCCCHHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHhhhccccccccccchHH
Confidence            9999999999999999999999999999999 699999999999999999999999988877661             33


Q ss_pred             HHHHHHHHhcccCCCCCcc
Q 017811          318 YKKQKEIYKGIFGPRPEPK  336 (365)
Q Consensus       318 ~~~~k~~y~kmf~~~~~~~  336 (365)
                      ...+-..+.+.+...|.+.
T Consensus       209 ~~eEle~~~~ai~~~P~d~  227 (331)
T 3dss_A          209 LLKELELVQNAFFTDPNDQ  227 (331)
T ss_dssp             HHHHHHHHHHHHHHSTTCH
T ss_pred             HHHHHHHHHHHHHhCCCCH
Confidence            4456666777776666554

>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus}

Probab=98.90  E-value=6e-09  Score=94.76  Aligned_cols=138  Identities=13%  Similarity=-0.001  Sum_probs=109.7

Q ss_pred             HHHHhhhhhhhhhhhhhHHHHHHHHHHHHHhhccchhhhhhhhHHHHHHHhhchhhhHHHHHHHHhcCHHHHHHHHHHHH
Q 017811          181 AADRRKMDGNALFKEEKLEEAMQQYEMAIAYMGDDFMFQLFGKYRDMALAVKNPCHLNMAACLLKLKRYEEAIGQCSLVL  260 (365)
Q Consensus       181 ~a~~~k~~G~~~~~~~~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~kl~~~~~A~~~~~~aL  260 (365)
                      .+..+...|..++..|++++|+..|.+++.+.+....           ......++.++|.++..+|++++|+..+++++
T Consensus       182 ~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~-----------~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al  250 (338)
T 3ro2_A          182 QGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGD-----------KAAERRAYSNLGNAYIFLGEFETASEYYKKTL  250 (338)
T ss_dssp             HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTC-----------HHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcCC-----------hHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence            3456778899999999999999999999998765321           11124469999999999999999999999999


Q ss_pred             hCCCCC------HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCc------HHHHHHHHHHHHHHHHHHHHHHHHHhcc
Q 017811          261 GEDENN------VKALFRRGKARAELGQTDAAREDFLKAGKFAPED------KSIARELRLLAEHEKAVYKKQKEIYKGI  328 (365)
Q Consensus       261 ~~~p~n------~ka~~~~g~a~~~l~~~~~A~~~l~~al~l~P~n------~~~~~~l~~l~~~~~~~~~~~k~~y~km  328 (365)
                      .+.+..      ..+++.+|.++..+|++++|+..|++++.+.|..      ..+...+..+....++..+.. ..|.+.
T Consensus       251 ~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~-~~~~~a  329 (338)
T 3ro2_A          251 LLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQAM-HFAEKH  329 (338)
T ss_dssp             HHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHH-HHHHHH
T ss_pred             HHHHhhcchhHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCChHHHH-HHHHHH
Confidence            887665      7899999999999999999999999999987643      335666777776666655444 346655


Q ss_pred             cC
Q 017811          329 FG  330 (365)
Q Consensus       329 f~  330 (365)
                      +.
T Consensus       330 ~~  331 (338)
T 3ro2_A          330 LE  331 (338)
T ss_dssp             HH
T ss_pred             HH
Confidence            43

>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A

Probab=98.89  E-value=3.5e-09  Score=100.61  Aligned_cols=103  Identities=17%  Similarity=0.114  Sum_probs=92.9

Q ss_pred             hhhHHHHHHHHhcCHHHHHHHHHHHHh----------------CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC
Q 017811          235 CHLNMAACLLKLKRYEEAIGQCSLVLG----------------EDENNVKALFRRGKARAELGQTDAAREDFLKAGKFAP  298 (365)
Q Consensus       235 ~~~nla~~~~kl~~~~~A~~~~~~aL~----------------~~p~n~ka~~~~g~a~~~l~~~~~A~~~l~~al~l~P  298 (365)
                      .+.++|.++++.|+|++|+..|+++|+                ++|.+..+|+++|.+|..+++|++|+.+++++++++|
T Consensus       225 ~~~~~g~~~~~~g~~~~Ai~~y~kAl~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~p  304 (370)
T 1ihg_A          225 DLKNIGNTFFKSQNWEMAIKKYTKVLRYVEGSRAAAEDADGAKLQPVALSCVLNIGACKLKMSDWQGAVDSCLEALEIDP  304 (370)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHSCHHHHGGGHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCT
T ss_pred             HHHHHHHHHHHhcCHHHHHHHHHHHHHHhhcCccccChHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHhCc
Confidence            488999999999999999999999998                8888999999999999999999999999999999999


Q ss_pred             CcHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCCCcccc
Q 017811          299 EDKSIARELRLLAEHEKAVYKKQKEIYKGIFGPRPEPKQK  338 (365)
Q Consensus       299 ~n~~~~~~l~~l~~~~~~~~~~~k~~y~kmf~~~~~~~~~  338 (365)
                      ++..+...++.+...++++.++.. .|.+.+...|.....
T Consensus       305 ~~~~a~~~lg~~~~~~g~~~eA~~-~l~~Al~l~P~~~~~  343 (370)
T 1ihg_A          305 SNTKALYRRAQGWQGLKEYDQALA-DLKKAQEIAPEDKAI  343 (370)
T ss_dssp             TCHHHHHHHHHHHHHTTCHHHHHH-HHHHHHHHCTTCHHH
T ss_pred             hhHHHHHHHHHHHHHccCHHHHHH-HHHHHHHhCCCCHHH
Confidence            999999999999888888776654 588888887765433

>3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans}

Probab=98.88  E-value=1.7e-08  Score=93.18  Aligned_cols=115  Identities=10%  Similarity=-0.133  Sum_probs=78.1

Q ss_pred             HHHhhhhhhhhhhhh--hHHHHHHHHHHHHHhhccchhhhhhhhHHHHHHHhhchhhhHHHHHH----HHh---cCHHHH
Q 017811          182 ADRRKMDGNALFKEE--KLEEAMQQYEMAIAYMGDDFMFQLFGKYRDMALAVKNPCHLNMAACL----LKL---KRYEEA  252 (365)
Q Consensus       182 a~~~k~~G~~~~~~~--~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~----~kl---~~~~~A  252 (365)
                      ...+..+|..+...+  ++.+|+..+..+|..+|.++.                 +++.++.++    ..+   +++.++
T Consensus        67 ~taWn~R~~~L~~l~~~~~~eeL~~~~~~L~~nPk~y~-----------------aW~~R~~iL~~~~~~l~~~~~~~~E  129 (306)
T 3dra_A           67 YTIWIYRFNILKNLPNRNLYDELDWCEEIALDNEKNYQ-----------------IWNYRQLIIGQIMELNNNDFDPYRE  129 (306)
T ss_dssp             HHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHHCTTCCH-----------------HHHHHHHHHHHHHHHTTTCCCTHHH
T ss_pred             HHHHHHHHHHHHHcccccHHHHHHHHHHHHHHCcccHH-----------------HHHHHHHHHHHHHHhccccCCHHHH
Confidence            345667888888888  999999999999999998654                 355666665    444   556666


Q ss_pred             HHHHHHHHhCCCCCHHHHHHHHHHHHHcCCHH--HHHHHHHHHHhhCCCcHHHHHHHHHHHHH
Q 017811          253 IGQCSLVLGEDENNVKALFRRGKARAELGQTD--AAREDFLKAGKFAPEDKSIARELRLLAEH  313 (365)
Q Consensus       253 ~~~~~~aL~~~p~n~ka~~~~g~a~~~l~~~~--~A~~~l~~al~l~P~n~~~~~~l~~l~~~  313 (365)
                      +..|+++|+.+|.|..|++.|+.++..++.++  +++..+.++++++|.|-.+......+...
T Consensus       130 L~~~~~~l~~~pkny~aW~~R~~vl~~l~~~~~~~EL~~~~~~i~~d~~N~sAW~~R~~ll~~  192 (306)
T 3dra_A          130 FDILEAMLSSDPKNHHVWSYRKWLVDTFDLHNDAKELSFVDKVIDTDLKNNSAWSHRFFLLFS  192 (306)
T ss_dssp             HHHHHHHHHHCTTCHHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHS
T ss_pred             HHHHHHHHHhCCCCHHHHHHHHHHHHHhcccChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHh
Confidence            66666666666666666666666666666666  66666666666666666666555555443

>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster}

Probab=98.87  E-value=4.1e-09  Score=99.97  Aligned_cols=140  Identities=11%  Similarity=0.026  Sum_probs=109.4

Q ss_pred             HHHhhhhhhhhhhhhhHHHHHHHHHHHHHhhccchhhhhhhhHHHHHHHhhchhhhHHHHHHHHhcCHHHHHHHHHHHHh
Q 017811          182 ADRRKMDGNALFKEEKLEEAMQQYEMAIAYMGDDFMFQLFGKYRDMALAVKNPCHLNMAACLLKLKRYEEAIGQCSLVLG  261 (365)
Q Consensus       182 a~~~k~~G~~~~~~~~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~kl~~~~~A~~~~~~aL~  261 (365)
                      +..+...|..++..|+|++|+..|.+++.+.+....           ......++.++|.+|..+|++++|+.++++++.
T Consensus       223 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~-----------~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~  291 (411)
T 4a1s_A          223 GRACGNLGNTYYLLGDFQAAIEHHQERLRIAREFGD-----------RAAERRANSNLGNSHIFLGQFEDAAEHYKRTLA  291 (411)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTC-----------HHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhcCC-----------cHHHHHHHHHHHHHHHHCcCHHHHHHHHHHHHH
Confidence            345667899999999999999999999999875321           111244689999999999999999999999998


Q ss_pred             CCCCC------HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCc------HHHHHHHHHHHHHHHHHHHHHHHHHhccc
Q 017811          262 EDENN------VKALFRRGKARAELGQTDAAREDFLKAGKFAPED------KSIARELRLLAEHEKAVYKKQKEIYKGIF  329 (365)
Q Consensus       262 ~~p~n------~ka~~~~g~a~~~l~~~~~A~~~l~~al~l~P~n------~~~~~~l~~l~~~~~~~~~~~k~~y~kmf  329 (365)
                      +.+..      ..+++.+|.++..+|++++|+..|++++.+.+..      ..+...+..+....++..++ ...|.+.+
T Consensus       292 ~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A-~~~~~~al  370 (411)
T 4a1s_A          292 LAVELGEREVEAQSCYSLGNTYTLLHEFNTAIEYHNRHLAIAQELGDRIGEARACWSLGNAHSAIGGHERA-LKYAEQHL  370 (411)
T ss_dssp             HHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHH-HHHHHHHH
T ss_pred             HHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCChHHHHHHHHHHHHHHHHhccHHHH-HHHHHHHH
Confidence            87754      7899999999999999999999999999986543      34666677776666665443 34466655


Q ss_pred             CCCC
Q 017811          330 GPRP  333 (365)
Q Consensus       330 ~~~~  333 (365)
                      ...+
T Consensus       371 ~~~~  374 (411)
T 4a1s_A          371 QLAX  374 (411)
T ss_dssp             HHCC
T ss_pred             HHHh
Confidence            4433

>1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3

Probab=98.86  E-value=2.7e-09  Score=104.82  Aligned_cols=106  Identities=17%  Similarity=0.008  Sum_probs=95.1

Q ss_pred             chhhhHHHHHHHHhcCHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHH
Q 017811          233 NPCHLNMAACLLKLKRYEEAIGQCSLVLGEDENNVKALFRRGKARAELGQTDAAREDFLKAGKFAPEDKSIARELRLLAE  312 (365)
Q Consensus       233 ~~~~~nla~~~~kl~~~~~A~~~~~~aL~~~p~n~ka~~~~g~a~~~l~~~~~A~~~l~~al~l~P~n~~~~~~l~~l~~  312 (365)
                      ...+.++|.++++.|+|++|+..++++++++|++..+++.+|.+|..+|+|++|+..|+++++++|++..+...++.+..
T Consensus         6 a~~~~~lg~~~~~~g~~~~A~~~~~~Al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~lg~~~~   85 (477)
T 1wao_1            6 AEELKTQANDYFKAKDYENAIKFYSQAIELNPSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKKYIKGYYRRAASNM   85 (477)
T ss_dssp             HTTSSSSSSSTTTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSCTTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Confidence            34588999999999999999999999999999999999999999999999999999999999999999999999999988


Q ss_pred             HHHHHHHHHHHHHhcccCCCCCccccc
Q 017811          313 HEKAVYKKQKEIYKGIFGPRPEPKQKK  339 (365)
Q Consensus       313 ~~~~~~~~~k~~y~kmf~~~~~~~~~~  339 (365)
                      .++++.++.. .|++.+...|......
T Consensus        86 ~~g~~~eA~~-~~~~al~~~p~~~~~~  111 (477)
T 1wao_1           86 ALGKFRAALR-DYETVVKVKPHDKDAK  111 (477)
T ss_dssp             HHTCHHHHHH-HHHHHHHHSTTCTTHH
T ss_pred             HcCCHHHHHH-HHHHHHHhCCCCHHHH
Confidence            8888776654 4888887777655443

>3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A*

Probab=98.84  E-value=3.1e-08  Score=95.92  Aligned_cols=124  Identities=11%  Similarity=0.036  Sum_probs=94.6

Q ss_pred             HHHHHHHhhhhhhhhhhhhhHHHHHHHHHHHHHhhccchhhhhhhhHHHHHHHhhchhhhHHHHHHHHhcCHHHHHHHHH
Q 017811          178 RIGAADRRKMDGNALFKEEKLEEAMQQYEMAIAYMGDDFMFQLFGKYRDMALAVKNPCHLNMAACLLKLKRYEEAIGQCS  257 (365)
Q Consensus       178 ~~~~a~~~k~~G~~~~~~~~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~kl~~~~~A~~~~~  257 (365)
                      .+..+....+.+...-..|+|++|+..|+++|.+.......    +     .......+.|||.+|..+|+|++|+.++.
T Consensus       294 ~~~~~~~~le~~~~~~~~g~~~eA~~~~~~~L~i~~~~lg~----~-----Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~  364 (433)
T 3qww_A          294 MVRYARNVIEEFRRAKHYKSPSELLEICELSQEKMSSVFED----S-----NVYMLHMMYQAMGVCLYMQDWEGALKYGQ  364 (433)
T ss_dssp             HHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHHHHTTTBCT----T-----SHHHHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHhhhccCHHHHHHHHHHHHHHhhCccCh----h-----chHHHHHHHHHHHHHHhhcCHHHHHHHHH
Confidence            34444555555555566789999999999999986432110    0     01124569999999999999999999999


Q ss_pred             HHHhC-----CCCC---HHHHHHHHHHHHHcCCHHHHHHHHHHHHhh-----CCCcHHHHHHHHHH
Q 017811          258 LVLGE-----DENN---VKALFRRGKARAELGQTDAAREDFLKAGKF-----APEDKSIARELRLL  310 (365)
Q Consensus       258 ~aL~~-----~p~n---~ka~~~~g~a~~~l~~~~~A~~~l~~al~l-----~P~n~~~~~~l~~l  310 (365)
                      ++|.+     .|++   ...|+++|.+|..+|+|++|+..|++|+.+     -|+++.+......+
T Consensus       365 ~aL~i~~~~lG~~Hp~~a~~l~nLa~~~~~qg~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~l~~~l  430 (433)
T 3qww_A          365 KIIKPYSKHYPVYSLNVASMWLKLGRLYMGLENKAAGEKALKKAIAIMEVAHGKDHPYISEIKQEI  430 (433)
T ss_dssp             HHHHHHHHHSCSSCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHHHHHHHHH
T ss_pred             HHHHHHHHHcCCCChHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHH
Confidence            99964     3444   568999999999999999999999999986     57888777655443

>1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1

Probab=98.84  E-value=6.5e-09  Score=85.99  Aligned_cols=94  Identities=13%  Similarity=0.134  Sum_probs=83.5

Q ss_pred             HHHhcCHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHcCCH----------HHHHHHHHHHHhhCCCcHHHHHHHHHHHH
Q 017811          243 LLKLKRYEEAIGQCSLVLGEDENNVKALFRRGKARAELGQT----------DAAREDFLKAGKFAPEDKSIARELRLLAE  312 (365)
Q Consensus       243 ~~kl~~~~~A~~~~~~aL~~~p~n~ka~~~~g~a~~~l~~~----------~~A~~~l~~al~l~P~n~~~~~~l~~l~~  312 (365)
                      .-+++.|++|+..++++++++|+++.+|+++|.++..++++          ++|+..|++|++++|++..+...++.+..
T Consensus        12 ~~r~~~feeA~~~~~~Ai~l~P~~aea~~n~G~~l~~l~~~~~g~~al~~~~eAi~~le~AL~ldP~~~~A~~~LG~ay~   91 (158)
T 1zu2_A           12 FDRILLFEQIRQDAENTYKSNPLDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLIDPKKDEAVWCIGNAYT   91 (158)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred             HHHHhHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHhcccchhhhhHhHHHHHHHHHHHHHHhCcCcHHHHHHHHHHHH
Confidence            34678899999999999999999999999999999999876          59999999999999999999999999988


Q ss_pred             HHH----------HHHHHHHHHHhcccCCCCCcc
Q 017811          313 HEK----------AVYKKQKEIYKGIFGPRPEPK  336 (365)
Q Consensus       313 ~~~----------~~~~~~k~~y~kmf~~~~~~~  336 (365)
                      .+.          ...++....|++.+...|+..
T Consensus        92 ~lg~l~P~~~~a~g~~~eA~~~~~kAl~l~P~~~  125 (158)
T 1zu2_A           92 SFAFLTPDETEAKHNFDLATQFFQQAVDEQPDNT  125 (158)
T ss_dssp             HHHHHCCCHHHHHHHHHHHHHHHHHHHHHCTTCH
T ss_pred             HhcccCcchhhhhccHHHHHHHHHHHHHhCCCCH
Confidence            775          355666777999998888754

>1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1

Probab=98.84  E-value=6e-08  Score=86.93  Aligned_cols=95  Identities=9%  Similarity=0.015  Sum_probs=81.0

Q ss_pred             hhhhHHHHHHHH----hcCHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHH----cCCHHHHHHHHHHHHhhCCCcHHHHH
Q 017811          234 PCHLNMAACLLK----LKRYEEAIGQCSLVLGEDENNVKALFRRGKARAE----LGQTDAAREDFLKAGKFAPEDKSIAR  305 (365)
Q Consensus       234 ~~~~nla~~~~k----l~~~~~A~~~~~~aL~~~p~n~ka~~~~g~a~~~----l~~~~~A~~~l~~al~l~P~n~~~~~  305 (365)
                      .+++++|.+|..    .+++++|+.+++++++.+  +..+++++|.+|..    .+++++|+..|++++++.  +..+..
T Consensus       111 ~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~~--~~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~~--~~~a~~  186 (273)
T 1ouv_A          111 EGCASLGGIYHDGKVVTRDFKKAVEYFTKACDLN--DGDGCTILGSLYDAGRGTPKDLKKALASYDKACDLK--DSPGCF  186 (273)
T ss_dssp             HHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHTT--CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT--CHHHHH
T ss_pred             cHHHHHHHHHHcCCCcccCHHHHHHHHHHHHhcC--cHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC--CHHHHH
Confidence            468999999999    999999999999999986  78999999999999    999999999999999874  578888


Q ss_pred             HHHHHHHH----HHHHHHHHHHHHhcccCCCC
Q 017811          306 ELRLLAEH----EKAVYKKQKEIYKGIFGPRP  333 (365)
Q Consensus       306 ~l~~l~~~----~~~~~~~~k~~y~kmf~~~~  333 (365)
                      .+..+...    .++..+. ...|.+.+...+
T Consensus       187 ~lg~~~~~g~~~~~~~~~A-~~~~~~a~~~~~  217 (273)
T 1ouv_A          187 NAGNMYHHGEGATKNFKEA-LARYSKACELEN  217 (273)
T ss_dssp             HHHHHHHHTCSSCCCHHHH-HHHHHHHHHTTC
T ss_pred             HHHHHHHcCCCCCccHHHH-HHHHHHHHhCCC
Confidence            88888777    6665544 455777776533

>4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis}

Probab=98.83  E-value=1.8e-08  Score=91.55  Aligned_cols=108  Identities=16%  Similarity=0.076  Sum_probs=74.2

Q ss_pred             HhhhhhhhhhhhhhHHHHHHHHHHHHHhhccchhhhhhhhHHHHHHHhhchhhhHHHHHHHHhcCHHHHHHHHHHHHhCC
Q 017811          184 RRKMDGNALFKEEKLEEAMQQYEMAIAYMGDDFMFQLFGKYRDMALAVKNPCHLNMAACLLKLKRYEEAIGQCSLVLGED  263 (365)
Q Consensus       184 ~~k~~G~~~~~~~~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~kl~~~~~A~~~~~~aL~~~  263 (365)
                      .....|..+++.++|.+|+..|+.++...+..               +...+++++|.++..+|++++|+..|.+++...
T Consensus       137 ~~~~~a~l~~~~~r~~dA~~~l~~a~~~~d~~---------------~~~~a~~~LG~al~~LG~~~eAl~~l~~a~~g~  201 (282)
T 4f3v_A          137 VAWMKAVVYGAAERWTDVIDQVKSAGKWPDKF---------------LAGAAGVAHGVAAANLALFTEAERRLTEANDSP  201 (282)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHTTGGGCSCHH---------------HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTST
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHhhccCCcc---------------cHHHHHHHHHHHHHHCCCHHHHHHHHHHHhcCC
Confidence            45666677777777777777776554432110               112357778888888888888888888877544


Q ss_pred             --CC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCcHHHHHHH
Q 017811          264 --EN-NVKALFRRGKARAELGQTDAAREDFLKAGKFAPEDKSIAREL  307 (365)
Q Consensus       264 --p~-n~ka~~~~g~a~~~l~~~~~A~~~l~~al~l~P~n~~~~~~l  307 (365)
                        |. ...+++++|.|+..+|+.++|...|++++..+|+ ..+...|
T Consensus       202 ~~P~~~~da~~~~glaL~~lGr~deA~~~l~~a~a~~P~-~~~~~aL  247 (282)
T 4f3v_A          202 AGEACARAIAWYLAMARRSQGNESAAVALLEWLQTTHPE-PKVAAAL  247 (282)
T ss_dssp             TTTTTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSCC-HHHHHHH
T ss_pred             CCccccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCc-HHHHHHH
Confidence              54 5667788888888888888888888888888887 6665555

>3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp}

Probab=98.83  E-value=1.3e-08  Score=88.51  Aligned_cols=111  Identities=9%  Similarity=-0.020  Sum_probs=79.5

Q ss_pred             HHHHhhhhhhhhhhhhhHHHHHHHHHHHHHhhccchhhhhhhhHHHHHHHhhchhhhHHHHHHHHhc----CHHHHHHHH
Q 017811          181 AADRRKMDGNALFKEEKLEEAMQQYEMAIAYMGDDFMFQLFGKYRDMALAVKNPCHLNMAACLLKLK----RYEEAIGQC  256 (365)
Q Consensus       181 ~a~~~k~~G~~~~~~~~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~kl~----~~~~A~~~~  256 (365)
                      .+..+...|..++..+++.+|+..|++|++...                   ..++++||.+|.. +    ++++|+.++
T Consensus        17 ~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~g~-------------------~~a~~~lg~~y~~-~g~~~~~~~A~~~~   76 (212)
T 3rjv_A           17 DRRAQYYLADTWVSSGDYQKAEYWAQKAAAQGD-------------------GDALALLAQLKIR-NPQQADYPQARQLA   76 (212)
T ss_dssp             CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTC-------------------HHHHHHHHHHTTS-STTSCCHHHHHHHH
T ss_pred             CHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCC-------------------HHHHHHHHHHHHc-CCCCCCHHHHHHHH
Confidence            456678899999999999999999999987632                   1236677777766 5    677777777


Q ss_pred             HHHHhCCCCCHHHHHHHHHHHHH----cCCHHHHHHHHHHHHhhCCC--cHHHHHHHHHHHHH
Q 017811          257 SLVLGEDENNVKALFRRGKARAE----LGQTDAAREDFLKAGKFAPE--DKSIARELRLLAEH  313 (365)
Q Consensus       257 ~~aL~~~p~n~ka~~~~g~a~~~----l~~~~~A~~~l~~al~l~P~--n~~~~~~l~~l~~~  313 (365)
                      +++++  +.++.+++.+|.+|..    .+++++|+.+|+++++..|.  ++.+...|..+...
T Consensus        77 ~~A~~--~g~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~~~~~~~a~~~Lg~~y~~  137 (212)
T 3rjv_A           77 EKAVE--AGSKSGEIVLARVLVNRQAGATDVAHAITLLQDAARDSESDAAVDAQMLLGLIYAS  137 (212)
T ss_dssp             HHHHH--TTCHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHTSSTTSHHHHHHHHHHHHHHHH
T ss_pred             HHHHH--CCCHHHHHHHHHHHHcCCCCccCHHHHHHHHHHHHHcCCCcchHHHHHHHHHHHHc
Confidence            77743  4567777777777776    67777777777777777663  46666666666554

>3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A*

Probab=98.82  E-value=6.1e-08  Score=90.78  Aligned_cols=130  Identities=12%  Similarity=0.039  Sum_probs=111.6

Q ss_pred             hhhhhhHHHHHHHHHHHHHhhccchhhhhhhhHHHHHHHhhchhhhHHHHHHHHhc-CHHHHHHHHHHHHhCCCCCHHHH
Q 017811          192 LFKEEKLEEAMQQYEMAIAYMGDDFMFQLFGKYRDMALAVKNPCHLNMAACLLKLK-RYEEAIGQCSLVLGEDENNVKAL  270 (365)
Q Consensus       192 ~~~~~~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~kl~-~~~~A~~~~~~aL~~~p~n~ka~  270 (365)
                      +.+.+...+|+..+.++|.++|.++.                 +++.++.++..++ .+++++..++.+|..+|.|..++
T Consensus        64 ~~~~e~se~AL~lt~~~L~~nP~~yt-----------------aWn~R~~iL~~l~~~l~eEL~~~~~~L~~nPKny~aW  126 (349)
T 3q7a_A           64 AAKEEKSERALELTEIIVRMNPAHYT-----------------VWQYRFSLLTSLNKSLEDELRLMNEFAVQNLKSYQVW  126 (349)
T ss_dssp             HHTTCCSHHHHHHHHHHHHHCTTCHH-----------------HHHHHHHHHHHTTCCHHHHHHHHHHHHHTTCCCHHHH
T ss_pred             HHhCCCCHHHHHHHHHHHHhCchhHH-----------------HHHHHHHHHHHhhhhHHHHHHHHHHHHHhCCCcHHHH
Confidence            33445557899999999999999755                 4999999999999 59999999999999999999999


Q ss_pred             HHHHHHHHHc-C-CHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHHHHHH-------HHHHHHHhcccCCCCCcccc
Q 017811          271 FRRGKARAEL-G-QTDAAREDFLKAGKFAPEDKSIARELRLLAEHEKAVY-------KKQKEIYKGIFGPRPEPKQK  338 (365)
Q Consensus       271 ~~~g~a~~~l-~-~~~~A~~~l~~al~l~P~n~~~~~~l~~l~~~~~~~~-------~~~k~~y~kmf~~~~~~~~~  338 (365)
                      +.|+.++..+ + ++++++..+.++++++|+|-.+....+.+........       ..+-..+.++++..+.+...
T Consensus       127 ~hR~wlL~~l~~~~~~~EL~~~~k~L~~dpkNy~AW~~R~wvl~~l~~~~~~~~~~~~eELe~~~k~I~~dp~N~SA  203 (349)
T 3q7a_A          127 HHRLLLLDRISPQDPVSEIEYIHGSLLPDPKNYHTWAYLHWLYSHFSTLGRISEAQWGSELDWCNEMLRVDGRNNSA  203 (349)
T ss_dssp             HHHHHHHHHHCCSCCHHHHHHHHHHTSSCTTCHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHCTTCHHH
T ss_pred             HHHHHHHHHhcCCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHhCCCCHHH
Confidence            9999999998 8 9999999999999999999999999888877776655       36677788888777654433

>3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans}

Probab=98.80  E-value=1.7e-08  Score=93.15  Aligned_cols=132  Identities=9%  Similarity=-0.096  Sum_probs=114.5

Q ss_pred             Hhhhhhhhh----hhh---hhHHHHHHHHHHHHHhhccchhhhhhhhHHHHHHHhhchhhhHHHHHHHHhcCHH--HHHH
Q 017811          184 RRKMDGNAL----FKE---EKLEEAMQQYEMAIAYMGDDFMFQLFGKYRDMALAVKNPCHLNMAACLLKLKRYE--EAIG  254 (365)
Q Consensus       184 ~~k~~G~~~----~~~---~~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~kl~~~~--~A~~  254 (365)
                      .+..++..+    ...   +++.+++..+.+++...|.++.                 ++++++.+..+++.++  +++.
T Consensus       105 aW~~R~~iL~~~~~~l~~~~~~~~EL~~~~~~l~~~pkny~-----------------aW~~R~~vl~~l~~~~~~~EL~  167 (306)
T 3dra_A          105 IWNYRQLIIGQIMELNNNDFDPYREFDILEAMLSSDPKNHH-----------------VWSYRKWLVDTFDLHNDAKELS  167 (306)
T ss_dssp             HHHHHHHHHHHHHHHTTTCCCTHHHHHHHHHHHHHCTTCHH-----------------HHHHHHHHHHHTTCTTCHHHHH
T ss_pred             HHHHHHHHHHHHHHhccccCCHHHHHHHHHHHHHhCCCCHH-----------------HHHHHHHHHHHhcccChHHHHH
Confidence            344556655    444   7899999999999999999855                 4999999999999999  9999


Q ss_pred             HHHHHHhCCCCCHHHHHHHHHHHHHcCC------HHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Q 017811          255 QCSLVLGEDENNVKALFRRGKARAELGQ------TDAAREDFLKAGKFAPEDKSIARELRLLAEHEKAVYKKQKEIYKGI  328 (365)
Q Consensus       255 ~~~~aL~~~p~n~ka~~~~g~a~~~l~~------~~~A~~~l~~al~l~P~n~~~~~~l~~l~~~~~~~~~~~k~~y~km  328 (365)
                      +|+++|+.+|.|..|++.|+.++..++.      +++++..+.+++.++|+|..+...++.+....+.........+.++
T Consensus       168 ~~~~~i~~d~~N~sAW~~R~~ll~~l~~~~~~~~~~eEl~~~~~aI~~~p~n~SaW~y~~~ll~~~~~~~~~~~~~~~~~  247 (306)
T 3dra_A          168 FVDKVIDTDLKNNSAWSHRFFLLFSKKHLATDNTIDEELNYVKDKIVKCPQNPSTWNYLLGIHERFDRSITQLEEFSLQF  247 (306)
T ss_dssp             HHHHHHHHCTTCHHHHHHHHHHHHSSGGGCCHHHHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHTTCCGGGGHHHHHTT
T ss_pred             HHHHHHHhCCCCHHHHHHHHHHHHhccccchhhhHHHHHHHHHHHHHhCCCCccHHHHHHHHHHhcCCChHHHHHHHHHH
Confidence            9999999999999999999999999998      9999999999999999999999999988877766556666677777


Q ss_pred             cCCC
Q 017811          329 FGPR  332 (365)
Q Consensus       329 f~~~  332 (365)
                      +...
T Consensus       248 ~~~~  251 (306)
T 3dra_A          248 VDLE  251 (306)
T ss_dssp             EEGG
T ss_pred             Hhcc
Confidence            6543

>3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A*

Probab=98.79  E-value=4.9e-08  Score=90.89  Aligned_cols=130  Identities=8%  Similarity=-0.041  Sum_probs=110.8

Q ss_pred             hhhhhhHH-HHHHHHHHHHHhhccchhhhhhhhHHHHHHHhhchhhhHHHHHHHHhcC----------HHHHHHHHHHHH
Q 017811          192 LFKEEKLE-EAMQQYEMAIAYMGDDFMFQLFGKYRDMALAVKNPCHLNMAACLLKLKR----------YEEAIGQCSLVL  260 (365)
Q Consensus       192 ~~~~~~y~-~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~kl~~----------~~~A~~~~~~aL  260 (365)
                      ..+.|.|. +|+..+.++|.++|.++.                 +++.++.+...++.          +.+++..++.+|
T Consensus        39 ~~~~~e~s~eaL~~t~~~L~~nP~~yt-----------------aWn~Rr~iL~~l~~~~~~~~~~~~l~~EL~~~~~~L  101 (331)
T 3dss_A           39 KRQAGELDESVLELTSQILGANPDFAT-----------------LWNCRREVLQHLETEKSPEESAALVKAELGFLESCL  101 (331)
T ss_dssp             HHHTTCCSHHHHHHHHHHHTTCTTCHH-----------------HHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHcCCCCHHHHHHHHHHHHHCchhHH-----------------HHHHHHHHHHHhcccccchhhhHHHHHHHHHHHHHH
Confidence            34567776 799999999999999754                 48889999988876          789999999999


Q ss_pred             hCCCCCHHHHHHHHHHHHHcCC--HHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCCCcccc
Q 017811          261 GEDENNVKALFRRGKARAELGQ--TDAAREDFLKAGKFAPEDKSIARELRLLAEHEKAVYKKQKEIYKGIFGPRPEPKQK  338 (365)
Q Consensus       261 ~~~p~n~ka~~~~g~a~~~l~~--~~~A~~~l~~al~l~P~n~~~~~~l~~l~~~~~~~~~~~k~~y~kmf~~~~~~~~~  338 (365)
                      ..+|.|..+|+.|+.++..++.  +++++..+.++++++|.|-.+......+....+...+.+-..+.+++...|.+...
T Consensus       102 ~~~PKny~aW~hR~wlL~~l~~~~~~~EL~~~~k~l~~dprNy~AW~~R~~vl~~l~~~~~eel~~~~~~I~~~p~N~SA  181 (331)
T 3dss_A          102 RVNPKSYGTWHHRCWLLSRLPEPNWARELELCARFLEADERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNFSNYSS  181 (331)
T ss_dssp             HHCTTCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCSCCHHH
T ss_pred             HhCCCCHHHHHHHHHHHhccCcccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHCCCCHHH
Confidence            9999999999999999999994  99999999999999999999999988887666553356667788888777765544

>3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp}

Probab=98.78  E-value=2.7e-08  Score=86.54  Aligned_cols=111  Identities=15%  Similarity=0.088  Sum_probs=94.5

Q ss_pred             HHHhhhhhhhhhhhh----hHHHHHHHHHHHHHhhccchhhhhhhhHHHHHHHhhchhhhHHHHHHHH----hcCHHHHH
Q 017811          182 ADRRKMDGNALFKEE----KLEEAMQQYEMAIAYMGDDFMFQLFGKYRDMALAVKNPCHLNMAACLLK----LKRYEEAI  253 (365)
Q Consensus       182 a~~~k~~G~~~~~~~----~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~k----l~~~~~A~  253 (365)
                      +..+...|..+.. +    ++.+|+..|++|++.  .+                 ..++++||.+|..    .+++.+|+
T Consensus        50 ~~a~~~lg~~y~~-~g~~~~~~~A~~~~~~A~~~--g~-----------------~~a~~~Lg~~y~~g~g~~~d~~~A~  109 (212)
T 3rjv_A           50 GDALALLAQLKIR-NPQQADYPQARQLAEKAVEA--GS-----------------KSGEIVLARVLVNRQAGATDVAHAI  109 (212)
T ss_dssp             HHHHHHHHHHTTS-STTSCCHHHHHHHHHHHHHT--TC-----------------HHHHHHHHHHHTCGGGSSCCHHHHH
T ss_pred             HHHHHHHHHHHHc-CCCCCCHHHHHHHHHHHHHC--CC-----------------HHHHHHHHHHHHcCCCCccCHHHHH
Confidence            3456678888887 6    899999999999764  22                 2358999999998    89999999


Q ss_pred             HHHHHHHhCCC--CCHHHHHHHHHHHHH----cCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHH
Q 017811          254 GQCSLVLGEDE--NNVKALFRRGKARAE----LGQTDAAREDFLKAGKFAPEDKSIARELRLLAEH  313 (365)
Q Consensus       254 ~~~~~aL~~~p--~n~ka~~~~g~a~~~----l~~~~~A~~~l~~al~l~P~n~~~~~~l~~l~~~  313 (365)
                      .++.++++..|  .++.+++++|.+|..    .+++++|+.+|++++++ |.+..+...|..+...
T Consensus       110 ~~~~~A~~~~~~~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~-~~~~~a~~~Lg~~y~~  174 (212)
T 3rjv_A          110 TLLQDAARDSESDAAVDAQMLLGLIYASGVHGPEDDVKASEYFKGSSSL-SRTGYAEYWAGMMFQQ  174 (212)
T ss_dssp             HHHHHHTSSTTSHHHHHHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHT-SCTTHHHHHHHHHHHH
T ss_pred             HHHHHHHHcCCCcchHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHc-CCCHHHHHHHHHHHHc
Confidence            99999999998  469999999999999    89999999999999998 6777788888877643

>3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A*

Probab=98.76  E-value=5.3e-08  Score=91.21  Aligned_cols=137  Identities=8%  Similarity=-0.104  Sum_probs=117.4

Q ss_pred             HHhhhhhhhhhhhh-hHHHHHHHHHHHHHhhccchhhhhhhhHHHHHHHhhchhhhHHHHHHHHh-c-CHHHHHHHHHHH
Q 017811          183 DRRKMDGNALFKEE-KLEEAMQQYEMAIAYMGDDFMFQLFGKYRDMALAVKNPCHLNMAACLLKL-K-RYEEAIGQCSLV  259 (365)
Q Consensus       183 ~~~k~~G~~~~~~~-~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~kl-~-~~~~A~~~~~~a  259 (365)
                      ..+..+|..+...+ .+.+++..+..+|..+|.++.                 +++.++.++.++ + ++++++..|+++
T Consensus        89 taWn~R~~iL~~l~~~l~eEL~~~~~~L~~nPKny~-----------------aW~hR~wlL~~l~~~~~~~EL~~~~k~  151 (349)
T 3q7a_A           89 TVWQYRFSLLTSLNKSLEDELRLMNEFAVQNLKSYQ-----------------VWHHRLLLLDRISPQDPVSEIEYIHGS  151 (349)
T ss_dssp             HHHHHHHHHHHHTTCCHHHHHHHHHHHHHTTCCCHH-----------------HHHHHHHHHHHHCCSCCHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhhhhHHHHHHHHHHHHHhCCCcHH-----------------HHHHHHHHHHHhcCCChHHHHHHHHHH
Confidence            35667888888888 599999999999999999855                 499999999998 8 999999999999


Q ss_pred             HhCCCCCHHHHHHHHHHHHHcCCHH--------HHHHHHHHHHhhCCCcHHHHHHHHHHHHHHHH------HHHHHHHHH
Q 017811          260 LGEDENNVKALFRRGKARAELGQTD--------AAREDFLKAGKFAPEDKSIARELRLLAEHEKA------VYKKQKEIY  325 (365)
Q Consensus       260 L~~~p~n~ka~~~~g~a~~~l~~~~--------~A~~~l~~al~l~P~n~~~~~~l~~l~~~~~~------~~~~~k~~y  325 (365)
                      |+++|.|..|++.|+.++..++.++        +++..+.++++++|.|-.+......+......      ..+.+-..+
T Consensus       152 L~~dpkNy~AW~~R~wvl~~l~~~~~~~~~~~~eELe~~~k~I~~dp~N~SAW~~R~~lL~~l~~~~~~~~~~~eELe~~  231 (349)
T 3q7a_A          152 LLPDPKNYHTWAYLHWLYSHFSTLGRISEAQWGSELDWCNEMLRVDGRNNSAWGWRWYLRVSRPGAETSSRSLQDELIYI  231 (349)
T ss_dssp             TSSCTTCHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHTTSTTCCCCHHHHHHHHHHH
T ss_pred             HHhCCCCHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhccccccchHHHHHHHHHH
Confidence            9999999999999999999999998        99999999999999999999998888665442      234566667


Q ss_pred             hcccCCCCCcc
Q 017811          326 KGIFGPRPEPK  336 (365)
Q Consensus       326 ~kmf~~~~~~~  336 (365)
                      .+++...|.+.
T Consensus       232 ~~aI~~~P~n~  242 (349)
T 3q7a_A          232 LKSIHLIPHNV  242 (349)
T ss_dssp             HHHHHHCTTCH
T ss_pred             HHHHHhCCCCH
Confidence            77776666544

>3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A*

Probab=98.76  E-value=1e-07  Score=92.24  Aligned_cols=125  Identities=14%  Similarity=0.041  Sum_probs=95.8

Q ss_pred             HHHHhhhhhhhhhhhhhHHHHHHHHHHHHHhhccchhhhhhhhHHHHHHHhhchhhhHHHHHHHHhcCHHHHHHHHHHHH
Q 017811          181 AADRRKMDGNALFKEEKLEEAMQQYEMAIAYMGDDFMFQLFGKYRDMALAVKNPCHLNMAACLLKLKRYEEAIGQCSLVL  260 (365)
Q Consensus       181 ~a~~~k~~G~~~~~~~~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~kl~~~~~A~~~~~~aL  260 (365)
                      .+......-..+..+|+|++|+..|++++.+.......    +     ......++.|+|.+|..+|+|++|+.+|.++|
T Consensus       286 ~~~~ll~~ie~~~~~g~~~~a~~~~~~~L~~~~~~lg~----~-----h~~~~~~~~~L~~~y~~~g~~~eA~~~~~~~L  356 (429)
T 3qwp_A          286 EVQESLKKIEELKAHWKWEQVLAMCQAIISSNSERLPD----I-----NIYQLKVLDCAMDACINLGLLEEALFYGTRTM  356 (429)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHTCSSCCCCT----T-----SHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhhccHHHHHHHHHHHHHhccCcCCc----c-----chHHHHHHHHHHHHHHhhccHHHHHHHHHHHH
Confidence            34444555566778899999999999999875431110    0     01135569999999999999999999999999


Q ss_pred             hC-----CCCC---HHHHHHHHHHHHHcCCHHHHHHHHHHHHhh-----CCCcHHHHHHHHHHHHHH
Q 017811          261 GE-----DENN---VKALFRRGKARAELGQTDAAREDFLKAGKF-----APEDKSIARELRLLAEHE  314 (365)
Q Consensus       261 ~~-----~p~n---~ka~~~~g~a~~~l~~~~~A~~~l~~al~l-----~P~n~~~~~~l~~l~~~~  314 (365)
                      .+     .|++   ...++++|.+|..+|+|++|+..|++|+.+     -|+++.+...+..+....
T Consensus       357 ~i~~~~lg~~Hp~~a~~l~nLa~~~~~~g~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~~~~~l~~~~  423 (429)
T 3qwp_A          357 EPYRIFFPGSHPVRGVQVMKVGKLQLHQGMFPQAMKNLRLAFDIMRVTHGREHSLIEDLILLLEECD  423 (429)
T ss_dssp             HHHHHHSCSSCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTSHHHHHHHHHHHHHH
T ss_pred             HhHHHHcCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHH
Confidence            54     3444   468999999999999999999999999985     578887777665554433

>2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A

Probab=98.71  E-value=8.5e-08  Score=73.70  Aligned_cols=78  Identities=15%  Similarity=0.029  Sum_probs=70.2

Q ss_pred             hhHHHHHHHHhcCHHHHHHHHHHHHhCC-------CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCcHHHHHHHH
Q 017811          236 HLNMAACLLKLKRYEEAIGQCSLVLGED-------ENNVKALFRRGKARAELGQTDAAREDFLKAGKFAPEDKSIARELR  308 (365)
Q Consensus       236 ~~nla~~~~kl~~~~~A~~~~~~aL~~~-------p~n~ka~~~~g~a~~~l~~~~~A~~~l~~al~l~P~n~~~~~~l~  308 (365)
                      ++.+|..++..++|..|+..+..|+...       +..+..++.+|.++..+|+++.|+..+++++.++|++..+...+.
T Consensus         8 c~~lG~~~~~~~~y~~A~~W~~~Al~~~~~~~~~~~~~~~i~~~L~~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~n~~   87 (104)
T 2v5f_A            8 CFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLELDPEHQRANGNLK   87 (104)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred             HHHHHHHHHHccchHHHHHHHHHHHHhhhccCCCcccHHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHhhHH
Confidence            7899999999999999999999999753       356889999999999999999999999999999999999987777


Q ss_pred             HHHHH
Q 017811          309 LLAEH  313 (365)
Q Consensus       309 ~l~~~  313 (365)
                      .+...
T Consensus        88 ~~~~~   92 (104)
T 2v5f_A           88 YFEYI   92 (104)
T ss_dssp             HHHHH
T ss_pred             HHHHH
Confidence            55443

>4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis}

Probab=98.68  E-value=4.3e-08  Score=89.02  Aligned_cols=131  Identities=15%  Similarity=0.054  Sum_probs=108.3

Q ss_pred             hhhhhhhhhhhhhHHHHHHHHHHHHHhhccchhhhhhhhHHHHHHHhhchhhhHHHHHHHHhcCHHHHHHHHHHHHhCCC
Q 017811          185 RKMDGNALFKEEKLEEAMQQYEMAIAYMGDDFMFQLFGKYRDMALAVKNPCHLNMAACLLKLKRYEEAIGQCSLVLGEDE  264 (365)
Q Consensus       185 ~k~~G~~~~~~~~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~kl~~~~~A~~~~~~aL~~~p  264 (365)
                      ....+..+...|+|++|...|..++...|.+                 . +++++|.++++.++|++|+..++.++...+
T Consensus       105 ~LayA~~L~~~g~y~eA~~~l~~~~~~~p~~-----------------~-~~~~~a~l~~~~~r~~dA~~~l~~a~~~~d  166 (282)
T 4f3v_A          105 TMGFAACEAAQGNYADAMEALEAAPVAGSEH-----------------L-VAWMKAVVYGAAERWTDVIDQVKSAGKWPD  166 (282)
T ss_dssp             HHHHHHHHHHHTCHHHHHHHHTSSCCTTCHH-----------------H-HHHHHHHHHHHTTCHHHHHHHHTTGGGCSC
T ss_pred             HHHHHHHHHHCCCHHHHHHHHHHHHhcCCch-----------------H-HHHHHHHHHHHcCCHHHHHHHHHHhhccCC
Confidence            4456788888999999999999988766653                 2 489999999999999999999999988642


Q ss_pred             CC--HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC--CC-cHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCCC
Q 017811          265 NN--VKALFRRGKARAELGQTDAAREDFLKAGKFA--PE-DKSIARELRLLAEHEKAVYKKQKEIYKGIFGPRPE  334 (365)
Q Consensus       265 ~n--~ka~~~~g~a~~~l~~~~~A~~~l~~al~l~--P~-n~~~~~~l~~l~~~~~~~~~~~k~~y~kmf~~~~~  334 (365)
                      ..  ..++|.+|.++..+|++++|+..|++++.-.  |. ..++...+..+...+++.. +.+..|++++...|.
T Consensus       167 ~~~~~~a~~~LG~al~~LG~~~eAl~~l~~a~~g~~~P~~~~da~~~~glaL~~lGr~d-eA~~~l~~a~a~~P~  240 (282)
T 4f3v_A          167 KFLAGAAGVAHGVAAANLALFTEAERRLTEANDSPAGEACARAIAWYLAMARRSQGNES-AAVALLEWLQTTHPE  240 (282)
T ss_dssp             HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSTTTTTTHHHHHHHHHHHHHHHTCHH-HHHHHHHHHHHHSCC
T ss_pred             cccHHHHHHHHHHHHHHCCCHHHHHHHHHHHhcCCCCccccHHHHHHHHHHHHHcCCHH-HHHHHHHHHHhcCCc
Confidence            22  4589999999999999999999999998654  65 6678888888877777665 555669999988886

>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A

Probab=98.66  E-value=6.7e-08  Score=73.42  Aligned_cols=84  Identities=14%  Similarity=0.100  Sum_probs=69.1

Q ss_pred             HHHHhhhhhhhhhhhhhHHHHHHHHHHHHHhhccchhhhhhhhHHHHHHHhhchhhhHHHHHHHHhcCHHHHHHHHHHHH
Q 017811          181 AADRRKMDGNALFKEEKLEEAMQQYEMAIAYMGDDFMFQLFGKYRDMALAVKNPCHLNMAACLLKLKRYEEAIGQCSLVL  260 (365)
Q Consensus       181 ~a~~~k~~G~~~~~~~~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~kl~~~~~A~~~~~~aL  260 (365)
                      .+..+...|..++..|+|++|+..|++++++.|.+..                 +++++|.||..+|++++|+..+++++
T Consensus         6 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~-----------------a~~~lg~~~~~~g~~~~A~~~~~~al   68 (100)
T 3ma5_A            6 DPFTRYALAQEHLKHDNASRALALFEELVETDPDYVG-----------------TYYHLGKLYERLDRTDDAIDTYAQGI   68 (100)
T ss_dssp             CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCTH-----------------HHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHH-----------------HHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence            3567889999999999999999999999999998644                 49999999999999999999999999


Q ss_pred             hCCCC--CHHHHHHHHHHHHHcC
Q 017811          261 GEDEN--NVKALFRRGKARAELG  281 (365)
Q Consensus       261 ~~~p~--n~ka~~~~g~a~~~l~  281 (365)
                      ++.|.  +..+...+..++...+
T Consensus        69 ~l~~~~~~~~~~~~l~~~l~~~~   91 (100)
T 3ma5_A           69 EVAREEGTQKDLSELQDAKLKAE   91 (100)
T ss_dssp             HHHHHHSCHHHHHHHHHHHHHHH
T ss_pred             hhhhcCCchhHHHHHHHHHHHcc
Confidence            98763  4455445555544433

>3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633}

Probab=98.65  E-value=1.7e-07  Score=70.60  Aligned_cols=67  Identities=13%  Similarity=-0.066  Sum_probs=62.2

Q ss_pred             hhhHHHHHHHHhcC---HHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCcH
Q 017811          235 CHLNMAACLLKLKR---YEEAIGQCSLVLGEDENNVKALFRRGKARAELGQTDAAREDFLKAGKFAPEDK  301 (365)
Q Consensus       235 ~~~nla~~~~kl~~---~~~A~~~~~~aL~~~p~n~ka~~~~g~a~~~l~~~~~A~~~l~~al~l~P~n~  301 (365)
                      ++..+|.+++..++   .++|...++++|.+||+++.+++.+|.+++..|+|++|+..+++++..+|.++
T Consensus         8 ~~~~~a~al~~~~~~~~~~~A~~~l~~AL~~dp~~~rA~~~lg~~~~~~g~y~~Ai~~w~~~l~~~p~~~   77 (93)
T 3bee_A            8 QLAAKATTLYYLHKQAMTDEVSLLLEQALQLEPYNEAALSLIANDHFISFRFQEAIDTWVLLLDSNDPNL   77 (93)
T ss_dssp             HHHHHHHHHHHTTTTCCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTCCCTTC
T ss_pred             HHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCc
Confidence            48889999976666   79999999999999999999999999999999999999999999999999853

>2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7

Probab=98.63  E-value=3.3e-07  Score=90.62  Aligned_cols=135  Identities=7%  Similarity=-0.085  Sum_probs=111.1

Q ss_pred             HhhhhhhhhhhhhhHHHHHHHHHHHHHhhccchhhhhhhhHHHHHHHhhchhhhHHHHHHHHhcCHHHHHHHHHHHHhCC
Q 017811          184 RRKMDGNALFKEEKLEEAMQQYEMAIAYMGDDFMFQLFGKYRDMALAVKNPCHLNMAACLLKLKRYEEAIGQCSLVLGED  263 (365)
Q Consensus       184 ~~k~~G~~~~~~~~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~kl~~~~~A~~~~~~aL~~~  263 (365)
                      .+...|..+.+.|++++|...|++++.+.|.+..                .++.+++.++.+.|++++|+..+.++++..
T Consensus       323 l~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~----------------~~~~~~~~~~~~~~~~~~A~~~~~~Al~~~  386 (530)
T 2ooe_A          323 LYFAYADYEESRMKYEKVHSIYNRLLAIEDIDPT----------------LVYIQYMKFARRAEGIKSGRMIFKKAREDA  386 (530)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHSSSSCHH----------------HHHHHHHHHHHHHHHHHHHHHHHHHHHTCT
T ss_pred             HHHHHHHHHHhcCCHHHHHHHHHHHhCccccCch----------------HHHHHHHHHHHHhcCHHHHHHHHHHHHhcc
Confidence            3445667777899999999999999998776421                258899999999999999999999999999


Q ss_pred             CCCHHHHHHHHHH-HHHcCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCCCc
Q 017811          264 ENNVKALFRRGKA-RAELGQTDAAREDFLKAGKFAPEDKSIARELRLLAEHEKAVYKKQKEIYKGIFGPRPEP  335 (365)
Q Consensus       264 p~n~ka~~~~g~a-~~~l~~~~~A~~~l~~al~l~P~n~~~~~~l~~l~~~~~~~~~~~k~~y~kmf~~~~~~  335 (365)
                      |.+...+...+.. +..+|++++|...|+++++++|++..+...+..+....++. .+.+..|.+.+...+..
T Consensus       387 ~~~~~~~~~~a~~~~~~~~~~~~A~~~~e~al~~~p~~~~~~~~~~~~~~~~g~~-~~Ar~~~~~al~~~~~~  458 (530)
T 2ooe_A          387 RTRHHVYVTAALMEYYCSKDKSVAFKIFELGLKKYGDIPEYVLAYIDYLSHLNED-NNTRVLFERVLTSGSLP  458 (530)
T ss_dssp             TCCTHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTTTTCH-HHHHHHHHHHHHSCCSC
T ss_pred             CCchHHHHHHHHHHHHHcCChhHHHHHHHHHHHHCCCCHHHHHHHHHHHHhCCCH-hhHHHHHHHHHhccCCC
Confidence            9888888877765 44699999999999999999999999998888876555443 46778899988765543

>2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A

Probab=98.62  E-value=9.9e-08  Score=73.31  Aligned_cols=83  Identities=12%  Similarity=0.011  Sum_probs=69.7

Q ss_pred             HHHhhhhhhhhhhhhhHHHHHHHHHHHHHhhccchhhhhhhhHHHHHHHhhchhhhHHHHHHHHhcCHHHHHHHHHHHHh
Q 017811          182 ADRRKMDGNALFKEEKLEEAMQQYEMAIAYMGDDFMFQLFGKYRDMALAVKNPCHLNMAACLLKLKRYEEAIGQCSLVLG  261 (365)
Q Consensus       182 a~~~k~~G~~~~~~~~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~kl~~~~~A~~~~~~aL~  261 (365)
                      +..+...|..++..++|..|+.-|+.|+...+.....+          .....++.++|.||.++|+++.|+..+++++.
T Consensus         5 a~dc~~lG~~~~~~~~y~~A~~W~~~Al~~~~~~~~~~----------~~~~~i~~~L~~~~~~~g~~~~A~~~~~~al~   74 (104)
T 2v5f_A            5 AEDCFELGKVAYTEADYYHTELWMEQALRQLDEGEIST----------IDKVSVLDYLSYAVYQQGDLDKALLLTKKLLE   74 (104)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCS----------SCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHccchHHHHHHHHHHHHhhhccCCCc----------ccHHHHHHHHHHHHHHccCHHHHHHHHHHHHh
Confidence            45678999999999999999999999999875431100          01235689999999999999999999999999


Q ss_pred             CCCCCHHHHHHHH
Q 017811          262 EDENNVKALFRRG  274 (365)
Q Consensus       262 ~~p~n~ka~~~~g  274 (365)
                      ++|++..++.+++
T Consensus        75 l~P~~~~~~~n~~   87 (104)
T 2v5f_A           75 LDPEHQRANGNLK   87 (104)
T ss_dssp             HCTTCHHHHHHHH
T ss_pred             cCCCCHHHHhhHH
Confidence            9999999988886

>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1}

Probab=98.62  E-value=1.6e-07  Score=79.62  Aligned_cols=109  Identities=10%  Similarity=-0.013  Sum_probs=88.4

Q ss_pred             HHHHHhhhhhhhhhhhhhHHHHHHHHHHHHHhhccchhhhhhhhHHHHHHHhhchhhhHHHHHHHHhcCHHHHHHHHHHH
Q 017811          180 GAADRRKMDGNALFKEEKLEEAMQQYEMAIAYMGDDFMFQLFGKYRDMALAVKNPCHLNMAACLLKLKRYEEAIGQCSLV  259 (365)
Q Consensus       180 ~~a~~~k~~G~~~~~~~~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~kl~~~~~A~~~~~~a  259 (365)
                      ..+..+...|..+...|+|++|+..|.+++.+.......          ......+++++|.++..+|++++|+.++.++
T Consensus        64 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~----------~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~a  133 (203)
T 3gw4_A           64 AEHRALHQVGMVERMAGNWDAARRCFLEERELLASLPED----------PLAASANAYEVATVALHFGDLAGARQEYEKS  133 (203)
T ss_dssp             HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCC----------HHHHHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCcc----------HHHHHHHHHHHHHHHHHhCCHHHHHHHHHHH
Confidence            456678889999999999999999999999985422100          0012456999999999999999999999999


Q ss_pred             HhCCC--CC----HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC
Q 017811          260 LGEDE--NN----VKALFRRGKARAELGQTDAAREDFLKAGKFAP  298 (365)
Q Consensus       260 L~~~p--~n----~ka~~~~g~a~~~l~~~~~A~~~l~~al~l~P  298 (365)
                      +.+.+  .+    ..++..+|.++..+|++++|+..|++++.+..
T Consensus       134 l~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~  178 (203)
T 3gw4_A          134 LVYAQQADDQVAIACAFRGLGDLAQQEKNLLEAQQHWLRARDIFA  178 (203)
T ss_dssp             HHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred             HHHHHhccchHHHHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHH
Confidence            96532  22    34678999999999999999999999998754

>1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2

Probab=98.61  E-value=4.3e-07  Score=85.08  Aligned_cols=127  Identities=7%  Similarity=-0.097  Sum_probs=81.7

Q ss_pred             HHHHhhhhhhhhhhhhhHHHHHHHHHHHHHhhccchhhhhhhhHHHHHHHhhchhhhHHHHHHHHhcCHHHHHHHHHHHH
Q 017811          181 AADRRKMDGNALFKEEKLEEAMQQYEMAIAYMGDDFMFQLFGKYRDMALAVKNPCHLNMAACLLKLKRYEEAIGQCSLVL  260 (365)
Q Consensus       181 ~a~~~k~~G~~~~~~~~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~kl~~~~~A~~~~~~aL  260 (365)
                      .+..+...|..++..|+|.+|+..|.+++.+.+.....           .....+++++|.++...|+|++|+..+.+++
T Consensus        52 ~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~-----------~~~~~~~~~la~~~~~~G~~~~A~~~~~~al  120 (373)
T 1hz4_A           52 RIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVW-----------HYALWSLIQQSEILFAQGFLQTAWETQEKAF  120 (373)
T ss_dssp             HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCH-----------HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHhcCcH-----------HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence            34456677888888888888888888888876542110           0112346677777777777777777777777


Q ss_pred             hCC--------CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCc-----HHHHHHHHHHHHHHHHHH
Q 017811          261 GED--------ENNVKALFRRGKARAELGQTDAAREDFLKAGKFAPED-----KSIARELRLLAEHEKAVY  318 (365)
Q Consensus       261 ~~~--------p~n~ka~~~~g~a~~~l~~~~~A~~~l~~al~l~P~n-----~~~~~~l~~l~~~~~~~~  318 (365)
                      .+.        |....++..+|.++..+|++++|...+.+++.+.|..     ..+...+..+....++..
T Consensus       121 ~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~~~g~~~  191 (373)
T 1hz4_A          121 QLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQQQLQCLAMLIQCSLARGDLD  191 (373)
T ss_dssp             HHHHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCGGGGHHHHHHHHHHHHHHTCHH
T ss_pred             HHHHHhccccCcHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhccCcHHHHHHHHHHHHHHHHcCCHH
Confidence            653        3345566677777777777777777777777776642     233444455544444443

>1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A

Probab=98.59  E-value=8.4e-07  Score=70.08  Aligned_cols=105  Identities=13%  Similarity=0.132  Sum_probs=86.4

Q ss_pred             hhhhhHHHHHHHHHHHHHhhccchhhhhhhhHHHHHHHhhchhhhHHHHHHHHhcCHHH---HHHHHHHHHhCC-C-CCH
Q 017811          193 FKEEKLEEAMQQYEMAIAYMGDDFMFQLFGKYRDMALAVKNPCHLNMAACLLKLKRYEE---AIGQCSLVLGED-E-NNV  267 (365)
Q Consensus       193 ~~~~~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~kl~~~~~---A~~~~~~aL~~~-p-~n~  267 (365)
                      ........+.+.|.+++...+..                 ..+.+|+|.|+.+..+...   +|..+...+..+ | .+.
T Consensus        12 ~~~~~l~~~~~~y~~e~~~~~~s-----------------~~~~F~yAw~Lv~S~~~~d~~~GI~lLe~l~~~~~p~~~R   74 (126)
T 1nzn_A           12 VSVEDLLKFEKKFQSEKAAGSVS-----------------KSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKGSKEEQR   74 (126)
T ss_dssp             HHHHHHHHHHHHHHHHHHHSCCC-----------------HHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTSCHHHHH
T ss_pred             CCHHHHHHHHHHHHHHhccCCCc-----------------HHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCcchHH
Confidence            34455667777888877654432                 2348999999999987777   999999999887 5 578


Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHH
Q 017811          268 KALFRRGKARAELGQTDAAREDFLKAGKFAPEDKSIARELRLLAEHE  314 (365)
Q Consensus       268 ka~~~~g~a~~~l~~~~~A~~~l~~al~l~P~n~~~~~~l~~l~~~~  314 (365)
                      .++|.+|.+++.+|+|++|+..+..+|+++|+|..+......+..+.
T Consensus        75 d~lY~LAvg~yklg~Y~~A~~~~~~lL~~eP~n~QA~~Lk~~i~~~i  121 (126)
T 1nzn_A           75 DYVFYLAVGNYRLKEYEKALKYVRGLLQTEPQNNQAKELERLIDKAM  121 (126)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHH
Confidence            89999999999999999999999999999999999998877776544

>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis}

Probab=98.56  E-value=1.4e-07  Score=72.99  Aligned_cols=83  Identities=18%  Similarity=0.132  Sum_probs=73.4

Q ss_pred             HHHHHHHHHHhCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHHHHHHHHHHHHHhcccC
Q 017811          251 EAIGQCSLVLGEDENNVKALFRRGKARAELGQTDAAREDFLKAGKFAPEDKSIARELRLLAEHEKAVYKKQKEIYKGIFG  330 (365)
Q Consensus       251 ~A~~~~~~aL~~~p~n~ka~~~~g~a~~~l~~~~~A~~~l~~al~l~P~n~~~~~~l~~l~~~~~~~~~~~k~~y~kmf~  330 (365)
                      .|+..+.++++.+|+++.+++.+|.++..+|++++|+..|++++.++|++..+...++.+....++..+.. ..|.+.+.
T Consensus         3 ~a~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~-~~~~~al~   81 (115)
T 2kat_A            3 AITERLEAMLAQGTDNMLLRFTLGKTYAEHEQFDAALPHLRAALDFDPTYSVAWKWLGKTLQGQGDRAGAR-QAWESGLA   81 (115)
T ss_dssp             CHHHHHHHHHTTTCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHH-HHHHHHHH
T ss_pred             HHHHHHHHHHHhCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHcCCHHHHH-HHHHHHHH
Confidence            57889999999999999999999999999999999999999999999999999999999988877766554 44787776


Q ss_pred             CCCC
Q 017811          331 PRPE  334 (365)
Q Consensus       331 ~~~~  334 (365)
                      ..+.
T Consensus        82 ~~~~   85 (115)
T 2kat_A           82 AAQS   85 (115)
T ss_dssp             HHHH
T ss_pred             hccc
Confidence            5553

>2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7

Probab=98.53  E-value=1.4e-06  Score=85.99  Aligned_cols=118  Identities=13%  Similarity=0.084  Sum_probs=100.9

Q ss_pred             HHHHHHHHHHHHhhccchhhhhhhhHHHHHHHhhchhhhHHHHHHHH-------hcCHH-------HHHHHHHHHHh-CC
Q 017811          199 EEAMQQYEMAIAYMGDDFMFQLFGKYRDMALAVKNPCHLNMAACLLK-------LKRYE-------EAIGQCSLVLG-ED  263 (365)
Q Consensus       199 ~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~k-------l~~~~-------~A~~~~~~aL~-~~  263 (365)
                      .+|+..|++|+...|.+..                 +++++|..+.+       +|+++       +|+..++++++ +.
T Consensus       255 ~~a~~~y~~al~~~p~~~~-----------------~w~~~~~~~~~~~~~~~~~g~~~~a~~~~~~A~~~~~~Al~~~~  317 (530)
T 2ooe_A          255 KRVMFAYEQCLLVLGHHPD-----------------IWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLL  317 (530)
T ss_dssp             HHHHHHHHHHHHHHTTCHH-----------------HHHHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHHHHHTTTTC
T ss_pred             HHHHHHHHHHHHhCCCCHH-----------------HHHHHHHHHHHhchhhhhccchhhhhhhhHHHHHHHHHHHHHhC
Confidence            4788999999999998644                 48999999886       78977       99999999997 89


Q ss_pred             CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCcH-HHHHHHHHHHHHHHHHHHHHHHHHhcccCCCCC
Q 017811          264 ENNVKALFRRGKARAELGQTDAAREDFLKAGKFAPEDK-SIARELRLLAEHEKAVYKKQKEIYKGIFGPRPE  334 (365)
Q Consensus       264 p~n~ka~~~~g~a~~~l~~~~~A~~~l~~al~l~P~n~-~~~~~l~~l~~~~~~~~~~~k~~y~kmf~~~~~  334 (365)
                      |++..+++.+|.++..+|++++|...|++++.+.|.+. .+...+..+..+.+.. +..+..|.+.+...+.
T Consensus       318 p~~~~l~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~-~~A~~~~~~Al~~~~~  388 (530)
T 2ooe_A          318 KKNMLLYFAYADYEESRMKYEKVHSIYNRLLAIEDIDPTLVYIQYMKFARRAEGI-KSGRMIFKKAREDART  388 (530)
T ss_dssp             SSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSSSSCHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHTCTTC
T ss_pred             cccHHHHHHHHHHHHhcCCHHHHHHHHHHHhCccccCchHHHHHHHHHHHHhcCH-HHHHHHHHHHHhccCC
Confidence            99999999999999999999999999999999999985 5777777776666554 4567789999887664

>1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1

Probab=98.53  E-value=1e-06  Score=71.18  Aligned_cols=97  Identities=13%  Similarity=0.020  Sum_probs=77.0

Q ss_pred             hhhhhhhhhhHHHHHHHHHHHHHhhccchhhhhhhhHHHHHHHhhchhhhHHHHHHHH----hcCHHHHHHHHHHHHhCC
Q 017811          188 DGNALFKEEKLEEAMQQYEMAIAYMGDDFMFQLFGKYRDMALAVKNPCHLNMAACLLK----LKRYEEAIGQCSLVLGED  263 (365)
Q Consensus       188 ~G~~~~~~~~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~k----l~~~~~A~~~~~~aL~~~  263 (365)
                      .|..+...+.+.+|+..|++|.+..  +                 ..+++|||.+|..    .+++.+|+.+++++.+. 
T Consensus        31 lg~~y~~g~~~~~A~~~~~~Aa~~g--~-----------------~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~-   90 (138)
T 1klx_A           31 LSLVSNSQINKQKLFQYLSKACELN--S-----------------GNGCRFLGDFYENGKYVKKDLRKAAQYYSKACGL-   90 (138)
T ss_dssp             HHHHTCTTSCHHHHHHHHHHHHHTT--C-----------------HHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHT-
T ss_pred             HHHHHHcCCCHHHHHHHHHHHHcCC--C-----------------HHHHHHHHHHHHcCCCCCccHHHHHHHHHHHHcC-
Confidence            6666777777788888888888762  2                 2348899999988    88999999999999876 


Q ss_pred             CCCHHHHHHHHHHHHH----cCCHHHHHHHHHHHHhhCCCcHHHHHHH
Q 017811          264 ENNVKALFRRGKARAE----LGQTDAAREDFLKAGKFAPEDKSIAREL  307 (365)
Q Consensus       264 p~n~ka~~~~g~a~~~----l~~~~~A~~~l~~al~l~P~n~~~~~~l  307 (365)
                       .++.+++++|.+|..    .+++++|+.+|++|.++  .++.+...|
T Consensus        91 -g~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~--g~~~A~~~l  135 (138)
T 1klx_A           91 -NDQDGCLILGYKQYAGKGVVKNEKQAVKTFEKACRL--GSEDACGIL  135 (138)
T ss_dssp             -TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT--TCHHHHHHC
T ss_pred             -CCHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHHC--CCHHHHHHH
Confidence             688999999999998    88999999999999887  345554444

>2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli}

Probab=98.40  E-value=2.9e-06  Score=82.96  Aligned_cols=77  Identities=14%  Similarity=-0.008  Sum_probs=65.5

Q ss_pred             hhhhHHHHHHHH----hcCHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHH----cCCHHHHHHHHHHHHhhCCC---cHH
Q 017811          234 PCHLNMAACLLK----LKRYEEAIGQCSLVLGEDENNVKALFRRGKARAE----LGQTDAAREDFLKAGKFAPE---DKS  302 (365)
Q Consensus       234 ~~~~nla~~~~k----l~~~~~A~~~~~~aL~~~p~n~ka~~~~g~a~~~----l~~~~~A~~~l~~al~l~P~---n~~  302 (365)
                      .+++++|.+|..    .+++++|+.+++++++..  ++.+++++|.+|..    .+++++|..+|++|++.+|+   +..
T Consensus       364 ~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~A~~~~--~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~~~~~~~~  441 (490)
T 2xm6_A          364 AAQFNLGNALLQGKGVKKDEQQAAIWMRKAAEQG--LSAAQVQLGEIYYYGLGVERDYVQAWAWFDTASTNDMNLFGTEN  441 (490)
T ss_dssp             HHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT--CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHHHCCHHHHHH
T ss_pred             HHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHhCC--CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCCCCCcCCHH
Confidence            468899999998    889999999999998864  78999999999998    89999999999999999854   777


Q ss_pred             HHHHHHHHHH
Q 017811          303 IARELRLLAE  312 (365)
Q Consensus       303 ~~~~l~~l~~  312 (365)
                      +...+..+..
T Consensus       442 a~~~l~~~~~  451 (490)
T 2xm6_A          442 RNITEKKLTA  451 (490)
T ss_dssp             HHHHHTTSCH
T ss_pred             HHHHHHhcCH
Confidence            7777776644

>1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2

Probab=98.39  E-value=1.6e-06  Score=81.21  Aligned_cols=141  Identities=9%  Similarity=0.014  Sum_probs=107.7

Q ss_pred             HHHHHHHhhhhhhhhhhhhhHHHHHHHHHHHHHhhccchhhhhhhhHHHHHHHhhchhhhHHHHHHHHhcCHHHHHHHHH
Q 017811          178 RIGAADRRKMDGNALFKEEKLEEAMQQYEMAIAYMGDDFMFQLFGKYRDMALAVKNPCHLNMAACLLKLKRYEEAIGQCS  257 (365)
Q Consensus       178 ~~~~a~~~k~~G~~~~~~~~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~kl~~~~~A~~~~~  257 (365)
                      ....+..+...|..++..|++.+|+..+.+++...|.+...            ....+++++|.++...|++++|+..+.
T Consensus        10 ~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~~~~~~~------------~~~~~~~~l~~~~~~~g~~~~A~~~~~   77 (373)
T 1hz4_A           10 DTMHAEFNALRAQVAINDGNPDEAERLAKLALEELPPGWFY------------SRIVATSVLGEVLHCKGELTRSLALMQ   77 (373)
T ss_dssp             HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCTTCHH------------HHHHHHHHHHHHHHHHTCHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCchh------------HHHHHHHHHHHHHHhcCcHHHHHHHHH
Confidence            33456667788999999999999999999999988653211            124468999999999999999999999


Q ss_pred             HHHhCCCCC------HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC--------CcHHHHHHHHHHHHHHHHHHHHHHH
Q 017811          258 LVLGEDENN------VKALFRRGKARAELGQTDAAREDFLKAGKFAP--------EDKSIARELRLLAEHEKAVYKKQKE  323 (365)
Q Consensus       258 ~aL~~~p~n------~ka~~~~g~a~~~l~~~~~A~~~l~~al~l~P--------~n~~~~~~l~~l~~~~~~~~~~~k~  323 (365)
                      +++.+.|..      ..+++.+|.++...|++++|+..|++++.+.+        ....+...+..+....++..+.. .
T Consensus        78 ~al~~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~-~  156 (373)
T 1hz4_A           78 QTEQMARQHDVWHYALWSLIQQSEILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAE-A  156 (373)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHHH-H
T ss_pred             HHHHHHHhcCcHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHhcCHHHHH-H
Confidence            999876533      34588999999999999999999999999863        33445556777766666655444 3


Q ss_pred             HHhcccCC
Q 017811          324 IYKGIFGP  331 (365)
Q Consensus       324 ~y~kmf~~  331 (365)
                      .+.+.+..
T Consensus       157 ~~~~al~~  164 (373)
T 1hz4_A          157 SARSGIEV  164 (373)
T ss_dssp             HHHHHHHH
T ss_pred             HHHHHHHH
Confidence            35555433

>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A

Probab=98.36  E-value=4.2e-06  Score=89.91  Aligned_cols=140  Identities=12%  Similarity=0.101  Sum_probs=107.2

Q ss_pred             HhhhhhhhhhhhhhHHHHHHHHHHHHHhhccchhhhhhhhHHHHHHHhhchhhhHHHHHHHHhcCHHHHHHHHHHHHhCC
Q 017811          184 RRKMDGNALFKEEKLEEAMQQYEMAIAYMGDDFMFQLFGKYRDMALAVKNPCHLNMAACLLKLKRYEEAIGQCSLVLGED  263 (365)
Q Consensus       184 ~~k~~G~~~~~~~~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~kl~~~~~A~~~~~~aL~~~  263 (365)
                      .+...|..++..|+|.+|+.+|.+|-     +                    |..+|.||.++|+|++|++.+++|...+
T Consensus      1197 d~~~iGd~le~eg~YeeA~~~Y~kA~-----n--------------------y~rLA~tLvkLge~q~AIEaarKA~n~~ 1251 (1630)
T 1xi4_A         1197 HIQQVGDRCYDEKMYDAAKLLYNNVS-----N--------------------FGRLASTLVHLGEYQAAVDGARKANSTR 1251 (1630)
T ss_pred             HHHHHHHHHHhcCCHHHHHHHHHhhh-----H--------------------HHHHHHHHHHhCCHHHHHHHHHHhCCHH
Confidence            45679999999999999999999972     1                    8899999999999999999999986554


Q ss_pred             C-------------------------CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHH--HH
Q 017811          264 E-------------------------NNVKALFRRGKARAELGQTDAAREDFLKAGKFAPEDKSIARELRLLAEHE--KA  316 (365)
Q Consensus       264 p-------------------------~n~ka~~~~g~a~~~l~~~~~A~~~l~~al~l~P~n~~~~~~l~~l~~~~--~~  316 (365)
                      +                         .++..+..++..|...|.|++|+..|+++|.++|.+..+..+|..+..+.  .+
T Consensus      1252 aWkev~~acve~~Ef~LA~~cgl~Iiv~~deLeeli~yYe~~G~feEAI~LlE~aL~LeraH~gmftELaiLyaKy~pek 1331 (1630)
T 1xi4_A         1252 TWKEVCFACVDGKEFRLAQMCGLHIVVHADELEELINYYQDRGYFEELITMLEAALGLERAHMGMFTELAILYSKFKPQK 1331 (1630)
T ss_pred             HHHHHHHHHhhhhHHHHHHHHHHhhhcCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccChhHhHHHHHHHHHHHhCCHHH
Confidence            4                         24556778888899999999999999999999999999998888876643  33


Q ss_pred             HHHHHHHHHhcccCCCC---CccccchhHHHHHHHH
Q 017811          317 VYKKQKEIYKGIFGPRP---EPKQKKNWLIIFWQLL  349 (365)
Q Consensus       317 ~~~~~k~~y~kmf~~~~---~~~~~~~~~~~~~~~~  349 (365)
                      ..+..+- |..-.+-++   .+.+...|..+++.|+
T Consensus      1332 lmEhlk~-f~~rini~k~~r~~e~~~lW~elv~LY~ 1366 (1630)
T 1xi4_A         1332 MREHLEL-FWSRVNIPKVLRAAEQAHLWAELVFLYD 1366 (1630)
T ss_pred             HHHHHHH-HHHhcccchHhHHHHHHHHHHHHHHHHH
Confidence            3334444 332222222   3445577777777665

>1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3

Probab=98.34  E-value=2.3e-06  Score=82.24  Aligned_cols=138  Identities=13%  Similarity=0.114  Sum_probs=79.1

Q ss_pred             HhhhhhhhhhhhhhHHHHHHHHHHHHHhhccchhhhhhhhHHHHHHHhhchhhhHHHHHHHHhcCHHHHHHHHHHHHhCC
Q 017811          184 RRKMDGNALFKEEKLEEAMQQYEMAIAYMGDDFMFQLFGKYRDMALAVKNPCHLNMAACLLKLKRYEEAIGQCSLVLGED  263 (365)
Q Consensus       184 ~~k~~G~~~~~~~~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~kl~~~~~A~~~~~~aL~~~  263 (365)
                      .+...|+.++..|+|++|+..|.++     .+                    |.++|.|+.++|+|++|+..+.++.  +
T Consensus       124 a~~~IGd~~~~~g~yeeA~~~Y~~a-----~n--------------------~~~LA~~L~~Lg~yq~AVea~~KA~--~  176 (449)
T 1b89_A          124 HIQQVGDRCYDEKMYDAAKLLYNNV-----SN--------------------FGRLASTLVHLGEYQAAVDGARKAN--S  176 (449)
T ss_dssp             -------------CTTTHHHHHHHT-----TC--------------------HHHHHHHHHTTTCHHHHHHHHHHHT--C
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHh-----hh--------------------HHHHHHHHHHhccHHHHHHHHHHcC--C
Confidence            5566666666666777666666655     11                    5566666666666666666666662  2


Q ss_pred             C---------------------------CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHHH-
Q 017811          264 E---------------------------NNVKALFRRGKARAELGQTDAAREDFLKAGKFAPEDKSIARELRLLAEHEK-  315 (365)
Q Consensus       264 p---------------------------~n~ka~~~~g~a~~~l~~~~~A~~~l~~al~l~P~n~~~~~~l~~l~~~~~-  315 (365)
                      |                           .++.-+..+...|...|+|++|+..|++++.+++.+..+..+|..+..+.+ 
T Consensus       177 ~~~Wk~v~~aCv~~~ef~lA~~~~l~L~~~ad~l~~lv~~Yek~G~~eEai~lLe~aL~le~ah~~~ftel~il~~ky~p  256 (449)
T 1b89_A          177 TRTWKEVCFACVDGKEFRLAQMCGLHIVVHADELEELINYYQDRGYFEELITMLEAALGLERAHMGMFTELAILYSKFKP  256 (449)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHTTTTTTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSTTCCHHHHHHHHHHHHTTCH
T ss_pred             chhHHHHHHHHHHcCcHHHHHHHHHHHHhCHhhHHHHHHHHHHCCCHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHhcCH
Confidence            2                           222334445578999999999999999999999999999999988866432 


Q ss_pred             -HHHHHHHHHHhcccCCCC---CccccchhHHHHHHHH
Q 017811          316 -AVYKKQKEIYKGIFGPRP---EPKQKKNWLIIFWQLL  349 (365)
Q Consensus       316 -~~~~~~k~~y~kmf~~~~---~~~~~~~~~~~~~~~~  349 (365)
                       +..+..+. |.+-.+-++   .+.+...|..+++.|+
T Consensus       257 ~k~~ehl~~-~~~~ini~k~~~~~~~~~~w~e~~~ly~  293 (449)
T 1b89_A          257 QKMREHLEL-FWSRVNIPKVLRAAEQAHLWAELVFLYD  293 (449)
T ss_dssp             HHHHHHHHH-HSTTSCHHHHHHHHHTTTCHHHHHHHHH
T ss_pred             HHHHHHHHH-HHHHhcCcHHHHHHHHHHHHHHHHHHHH
Confidence             22223332 222222211   1233578887777664

>3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus}

Probab=98.33  E-value=9.8e-07  Score=86.70  Aligned_cols=114  Identities=11%  Similarity=-0.049  Sum_probs=88.9

Q ss_pred             HHHHHHhhhhhhhhhhhhhHHHHHHHHHHHHHhhccchhhhhhhhHHHHHHHhhchhhhHHHHHHHHhcCHHHHHHHHHH
Q 017811          179 IGAADRRKMDGNALFKEEKLEEAMQQYEMAIAYMGDDFMFQLFGKYRDMALAVKNPCHLNMAACLLKLKRYEEAIGQCSL  258 (365)
Q Consensus       179 ~~~a~~~k~~G~~~~~~~~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~kl~~~~~A~~~~~~  258 (365)
                      ...+..+.+.|..|..+|+|++|+.+|+++|.+......-    .     .......++|||.+|..+|+|++|+..+.+
T Consensus       348 p~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~----~-----Hp~~a~~l~nLa~~~~~~G~~~eA~~~~~~  418 (490)
T 3n71_A          348 LYVLRLLSIASEVLSYLQAYEEASHYARRMVDGYMKLYHH----N-----NAQLGMAVMRAGLTNWHAGHIEVGHGMICK  418 (490)
T ss_dssp             HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCT----T-----CHHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHcCC----C-----CHHHHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence            4556677789999999999999999999999886321100    0     001245699999999999999999999999


Q ss_pred             HHhC-----CCCC---HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCcH
Q 017811          259 VLGE-----DENN---VKALFRRGKARAELGQTDAAREDFLKAGKFAPEDK  301 (365)
Q Consensus       259 aL~~-----~p~n---~ka~~~~g~a~~~l~~~~~A~~~l~~al~l~P~n~  301 (365)
                      ||++     -|++   .+.+-.++.++..++.|.+|...|+++.+-.-+|.
T Consensus       419 Al~i~~~~lG~~Hp~~~~~~~~l~~~~~e~~~~~~ae~~~~~~~~~~~~~~  469 (490)
T 3n71_A          419 AYAILLVTHGPSHPITKDLEAMRMQTEMELRMFRQNEFMYHKMREAALNNQ  469 (490)
T ss_dssp             HHHHHHHHTCTTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTC-
T ss_pred             HHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC
Confidence            9964     4555   45677899999999999999999999876443333

>3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens}

Probab=98.29  E-value=7.7e-06  Score=79.40  Aligned_cols=107  Identities=11%  Similarity=-0.037  Sum_probs=66.1

Q ss_pred             Hhhhhhhhhhhhh---hHHHHHHHHHHHHHhhccchhhhhhhhHHHHHHHhhchhhhHHHHHHHHh----cCHHHHHHHH
Q 017811          184 RRKMDGNALFKEE---KLEEAMQQYEMAIAYMGDDFMFQLFGKYRDMALAVKNPCHLNMAACLLKL----KRYEEAIGQC  256 (365)
Q Consensus       184 ~~k~~G~~~~~~~---~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~kl----~~~~~A~~~~  256 (365)
                      .+...|..+...|   ++.+|+..|++++...+....                 .++++|.+|...    +++++|+.+|
T Consensus       178 a~~~Lg~~~~~~g~~~~~~~A~~~~~~aa~~g~~~a~-----------------~~~~Lg~~y~~g~~~~~d~~~A~~~~  240 (452)
T 3e4b_A          178 CYVELATVYQKKQQPEQQAELLKQMEAGVSRGTVTAQ-----------------RVDSVARVLGDATLGTPDEKTAQALL  240 (452)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCSCHH-----------------HHHHHHHHHTCGGGSSCCHHHHHHHH
T ss_pred             HHHHHHHHHHHcCCcccHHHHHHHHHHHHHCCCHHHH-----------------HHHHHHHHHhCCCCCCCCHHHHHHHH
Confidence            4556788888888   999999999999998876533                 135555555443    4555555555


Q ss_pred             HHHHhCCCCCHHHHHHHHHH-H--HHcCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHH
Q 017811          257 SLVLGEDENNVKALFRRGKA-R--AELGQTDAAREDFLKAGKFAPEDKSIARELRLLAE  312 (365)
Q Consensus       257 ~~aL~~~p~n~ka~~~~g~a-~--~~l~~~~~A~~~l~~al~l~P~n~~~~~~l~~l~~  312 (365)
                      +++.   |+++.+++++|.+ +  ...+++++|+.+|+++.+.  ++..+...|+.+..
T Consensus       241 ~~aa---~g~~~a~~~Lg~~~~~~~~~~d~~~A~~~~~~Aa~~--g~~~A~~~Lg~~y~  294 (452)
T 3e4b_A          241 EKIA---PGYPASWVSLAQLLYDFPELGDVEQMMKYLDNGRAA--DQPRAELLLGKLYY  294 (452)
T ss_dssp             HHHG---GGSTHHHHHHHHHHHHSGGGCCHHHHHHHHHHHHHT--TCHHHHHHHHHHHH
T ss_pred             HHHc---CCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHC--CCHHHHHHHHHHHH
Confidence            5555   5555555555555 2  3455555555555555533  34555555555443

>1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1

Probab=98.28  E-value=7.5e-06  Score=65.96  Aligned_cols=94  Identities=14%  Similarity=-0.035  Sum_probs=82.8

Q ss_pred             hhhHHHHHHHHHHHHHhhccchhhhhhhhHHHHHHHhhchhhhHHHHHHHHhcCHHHHHHHHHHHHhCCCCCHHHHHHHH
Q 017811          195 EEKLEEAMQQYEMAIAYMGDDFMFQLFGKYRDMALAVKNPCHLNMAACLLKLKRYEEAIGQCSLVLGEDENNVKALFRRG  274 (365)
Q Consensus       195 ~~~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~kl~~~~~A~~~~~~aL~~~p~n~ka~~~~g  274 (365)
                      .+++.+|+..|++|.+.....                   +.  +|.+|...+.+++|+.+++++.+.  .++.+++++|
T Consensus         8 ~~d~~~A~~~~~~aa~~g~~~-------------------a~--lg~~y~~g~~~~~A~~~~~~Aa~~--g~~~a~~~Lg   64 (138)
T 1klx_A            8 KKDLKKAIQYYVKACELNEMF-------------------GC--LSLVSNSQINKQKLFQYLSKACEL--NSGNGCRFLG   64 (138)
T ss_dssp             HHHHHHHHHHHHHHHHTTCTT-------------------HH--HHHHTCTTSCHHHHHHHHHHHHHT--TCHHHHHHHH
T ss_pred             ccCHHHHHHHHHHHHcCCCHh-------------------hh--HHHHHHcCCCHHHHHHHHHHHHcC--CCHHHHHHHH
Confidence            478999999999999875331                   23  999999999999999999999987  6999999999


Q ss_pred             HHHHH----cCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHH
Q 017811          275 KARAE----LGQTDAAREDFLKAGKFAPEDKSIARELRLLAEH  313 (365)
Q Consensus       275 ~a~~~----l~~~~~A~~~l~~al~l~P~n~~~~~~l~~l~~~  313 (365)
                      .+|..    .+++++|+.+|+++.+.  .++.+...|..+...
T Consensus        65 ~~y~~G~g~~~d~~~A~~~~~~Aa~~--g~~~a~~~Lg~~y~~  105 (138)
T 1klx_A           65 DFYENGKYVKKDLRKAAQYYSKACGL--NDQDGCLILGYKQYA  105 (138)
T ss_dssp             HHHHHCSSSCCCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHH
T ss_pred             HHHHcCCCCCccHHHHHHHHHHHHcC--CCHHHHHHHHHHHHC
Confidence            99999    89999999999999987  678888889888765

>4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=98.26  E-value=2.2e-06  Score=81.63  Aligned_cols=143  Identities=8%  Similarity=-0.084  Sum_probs=88.8

Q ss_pred             hhhhhhhhhhhhhHHHHHHHHHHHHHhhccchhhhhhhhHHHHHHHhhchhhhHHHHHHHHhcCHHHHHHHHHHHHhCCC
Q 017811          185 RKMDGNALFKEEKLEEAMQQYEMAIAYMGDDFMFQLFGKYRDMALAVKNPCHLNMAACLLKLKRYEEAIGQCSLVLGEDE  264 (365)
Q Consensus       185 ~k~~G~~~~~~~~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~kl~~~~~A~~~~~~aL~~~p  264 (365)
                      ..++|..+++.|+|.+|+..|.++++..+.....................++.++|.+|.+.|+|++|+.++.+++.+.+
T Consensus         7 ~l~~a~~l~~~~~y~eA~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~al~~l~~~y~~~~~~~~a~~~~~~~~~~~~   86 (434)
T 4b4t_Q            7 KLEEARRLVNEKQYNEAEQVYLSLLDKDSSQSSAAAGASVDDKRRNEQETSILELGQLYVTMGAKDKLREFIPHSTEYMM   86 (434)
T ss_dssp             HHHHHHHHHHHTCHHHHHHHHHHHHHSCCCSSSBSSSSSBCSHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHTHHHHH
T ss_pred             HHHHHHHHHHCCCHHHHHHHHHHHHhhCcccchhHHHHHHHHHHhhhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHH
Confidence            45677888999999999999999999887643211100000000111233567777777777777777777766554321


Q ss_pred             ----------------------------------------------CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC
Q 017811          265 ----------------------------------------------NNVKALFRRGKARAELGQTDAAREDFLKAGKFAP  298 (365)
Q Consensus       265 ----------------------------------------------~n~ka~~~~g~a~~~l~~~~~A~~~l~~al~l~P  298 (365)
                                                                    ...+++.++|.+|..+|+|++|+..++.++....
T Consensus        87 ~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~  166 (434)
T 4b4t_Q           87 QFAKSKTVKVLKTLIEKFEQVPDSLDDQIFVCEKSIEFAKREKRVFLKHSLSIKLATLHYQKKQYKDSLALINDLLREFK  166 (434)
T ss_dssp             TSCHHHHHHHHHHHHHHHCSCCSCHHHHHHHHHHHHHHHHHSSCCSSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHT
T ss_pred             HccchHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHHccChHHHHHHHHHHHHHHH
Confidence                                                          1244677888899999999999988888876522


Q ss_pred             ------CcHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Q 017811          299 ------EDKSIARELRLLAEHEKAVYKKQKEIYKGI  328 (365)
Q Consensus       299 ------~n~~~~~~l~~l~~~~~~~~~~~k~~y~km  328 (365)
                            ....+...+..+...++++.+ .+..|.+.
T Consensus       167 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-A~~~~~~a  201 (434)
T 4b4t_Q          167 KLDDKPSLVDVHLLESKVYHKLRNLAK-SKASLTAA  201 (434)
T ss_dssp             TSSCSTHHHHHHHHHHHHHHHTTCHHH-HHHHHHHH
T ss_pred             hcccchhHHHHHHHHHHHHHHhCcHHH-HHHHHHHH
Confidence                  224455555555555554443 23334443

>2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli}

Probab=98.25  E-value=1.4e-05  Score=78.01  Aligned_cols=108  Identities=15%  Similarity=0.036  Sum_probs=68.6

Q ss_pred             HHHhhhhhhhhhh----hhhHHHHHHHHHHHHHhhccchhhhhhhhHHHHHHHhhchhhhHHHHHHHH----hcCHHHHH
Q 017811          182 ADRRKMDGNALFK----EEKLEEAMQQYEMAIAYMGDDFMFQLFGKYRDMALAVKNPCHLNMAACLLK----LKRYEEAI  253 (365)
Q Consensus       182 a~~~k~~G~~~~~----~~~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~k----l~~~~~A~  253 (365)
                      +..+...|..++.    .+++.+|+..|++|++..  +                 ..++++||.+|..    .+++++|+
T Consensus        39 ~~a~~~lg~~y~~g~~~~~~~~~A~~~~~~a~~~~--~-----------------~~a~~~Lg~~y~~g~g~~~~~~~A~   99 (490)
T 2xm6_A           39 AKAQLELGYRYFQGNETTKDLTQAMDWFRRAAEQG--Y-----------------TPAEYVLGLRYMNGEGVPQDYAQAV   99 (490)
T ss_dssp             HHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT--C-----------------HHHHHHHHHHHHHTSSSCCCHHHHH
T ss_pred             HHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHHCC--C-----------------HHHHHHHHHHHHcCCCCCCCHHHHH
Confidence            4456677888877    788999999999988752  1                 1135566666666    66666666


Q ss_pred             HHHHHHHhCCCCCHHHHHHHHHHHHH----cCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHH
Q 017811          254 GQCSLVLGEDENNVKALFRRGKARAE----LGQTDAAREDFLKAGKFAPEDKSIARELRLLAE  312 (365)
Q Consensus       254 ~~~~~aL~~~p~n~ka~~~~g~a~~~----l~~~~~A~~~l~~al~l~P~n~~~~~~l~~l~~  312 (365)
                      .++.++++.  .++.+++++|.+|..    .+++++|+.+|+++...  ++..+...|..+..
T Consensus       100 ~~~~~a~~~--~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~--~~~~a~~~Lg~~y~  158 (490)
T 2xm6_A          100 IWYKKAALK--GLPQAQQNLGVMYHEGNGVKVDKAESVKWFRLAAEQ--GRDSGQQSMGDAYF  158 (490)
T ss_dssp             HHHHHHHHT--TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT--TCHHHHHHHHHHHH
T ss_pred             HHHHHHHHC--CCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHC--CCHHHHHHHHHHHH
Confidence            666666553  356666666666666    56666666666666543  34555555555543

>3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A*

Probab=98.20  E-value=5.3e-06  Score=74.93  Aligned_cols=92  Identities=12%  Similarity=-0.000  Sum_probs=80.5

Q ss_pred             hhhhHHHHHHHHHHHHHhhccchhhhhhhhHHHHHHHhhchhhhHHHHHHHHh-----cCHHHHHHHHHHHHhCCCCC-H
Q 017811          194 KEEKLEEAMQQYEMAIAYMGDDFMFQLFGKYRDMALAVKNPCHLNMAACLLKL-----KRYEEAIGQCSLVLGEDENN-V  267 (365)
Q Consensus       194 ~~~~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~kl-----~~~~~A~~~~~~aL~~~p~n-~  267 (365)
                      ..+....|....++||+++|...               ...+|.-+|..|.+.     |+.++|..+++++|+++|+. .
T Consensus       175 Al~~l~~A~a~lerAleLDP~~~---------------~GsA~~~LG~lY~~vPp~~gGd~ekA~~~ferAL~LnP~~~i  239 (301)
T 3u64_A          175 LPDTVHAAVMMLERACDLWPSYQ---------------EGAVWNVLTKFYAAAPESFGGGMEKAHTAFEHLTRYCSAHDP  239 (301)
T ss_dssp             CHHHHHHHHHHHHHHHHHCTTHH---------------HHHHHHHHHHHHHHSCTTTTCCHHHHHHHHHHHHHHCCTTCS
T ss_pred             HHHhHHHHHHHHHHHHHhCCCcc---------------cCHHHHHHHHHHHhCCCccCCCHHHHHHHHHHHHHhCCCCCc
Confidence            44566789999999999998731               244699999999996     99999999999999999975 9


Q ss_pred             HHHHHHHHHHHH-cCCHHHHHHHHHHHHhhCCCc
Q 017811          268 KALFRRGKARAE-LGQTDAAREDFLKAGKFAPED  300 (365)
Q Consensus       268 ka~~~~g~a~~~-l~~~~~A~~~l~~al~l~P~n  300 (365)
                      .+++..|..+.. .+++++|...|++|+..+|..
T Consensus       240 d~~v~YA~~l~~~~gd~~~a~~~L~kAL~a~p~~  273 (301)
T 3u64_A          240 DHHITYADALCIPLNNRAGFDEALDRALAIDPES  273 (301)
T ss_dssp             HHHHHHHHHTTTTTTCHHHHHHHHHHHHHCCGGG
T ss_pred             hHHHHHHHHHHHhcCCHHHHHHHHHHHHcCCCCC
Confidence            999999999988 499999999999999988863

>4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=98.13  E-value=1.5e-05  Score=75.79  Aligned_cols=119  Identities=13%  Similarity=0.082  Sum_probs=90.4

Q ss_pred             HHHHHhhhhhhhhhhhhhHHHHHHHHHHHHHhhccchhhh--------------hhhhHHH------HH----H-----H
Q 017811          180 GAADRRKMDGNALFKEEKLEEAMQQYEMAIAYMGDDFMFQ--------------LFGKYRD------MA----L-----A  230 (365)
Q Consensus       180 ~~a~~~k~~G~~~~~~~~y~~A~~~y~~al~~~~~~~~~~--------------~~~~~~~------~~----~-----~  230 (365)
                      .....+...|..|+..|+|++|+..|.+++.+.+......              ..+....      ..    .     .
T Consensus        53 ~~~~al~~l~~~y~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~  132 (434)
T 4b4t_Q           53 EQETSILELGQLYVTMGAKDKLREFIPHSTEYMMQFAKSKTVKVLKTLIEKFEQVPDSLDDQIFVCEKSIEFAKREKRVF  132 (434)
T ss_dssp             HHHHHHHHHHHHHHHHTCHHHHHHHHHHTHHHHHTSCHHHHHHHHHHHHHHHCSCCSCHHHHHHHHHHHHHHHHHSSCCS
T ss_pred             hHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccchHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhCccH
Confidence            4455678899999999999999999999998775421110              0000000      00    0     1


Q ss_pred             hhchhhhHHHHHHHHhcCHHHHHHHHHHHHhC------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC
Q 017811          231 VKNPCHLNMAACLLKLKRYEEAIGQCSLVLGE------DENNVKALFRRGKARAELGQTDAAREDFLKAGKFAP  298 (365)
Q Consensus       231 ~~~~~~~nla~~~~kl~~~~~A~~~~~~aL~~------~p~n~ka~~~~g~a~~~l~~~~~A~~~l~~al~l~P  298 (365)
                      +...++.++|.+|...|+|.+|+..+.+++..      .+..+.++...|.+|..+|+|++|...|++++.+.+
T Consensus       133 ~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~  206 (434)
T 4b4t_Q          133 LKHSLSIKLATLHYQKKQYKDSLALINDLLREFKKLDDKPSLVDVHLLESKVYHKLRNLAKSKASLTAARTAAN  206 (434)
T ss_dssp             SHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSSCSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHccChHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHhh
Confidence            22457899999999999999999999998854      344567999999999999999999999999998754

>1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1

Probab=98.09  E-value=1.1e-05  Score=65.86  Aligned_cols=78  Identities=14%  Similarity=0.121  Sum_probs=63.8

Q ss_pred             HHhhhhhhhhhhhh---hHHHHHHHHHHHHHhh-ccchhhhhhhhHHHHHHHhhchhhhHHHHHHHHhcCHHHHHHHHHH
Q 017811          183 DRRKMDGNALFKEE---KLEEAMQQYEMAIAYM-GDDFMFQLFGKYRDMALAVKNPCHLNMAACLLKLKRYEEAIGQCSL  258 (365)
Q Consensus       183 ~~~k~~G~~~~~~~---~y~~A~~~y~~al~~~-~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~kl~~~~~A~~~~~~  258 (365)
                      ....+.|..+.+.+   ++.+++..++..++.. |.+                ...++++||..|+++++|.+|+.+|++
T Consensus        33 ~~~F~ya~~Lv~S~~~~~~~~gI~lLe~ll~~~~p~~----------------~rd~lY~LAv~~~kl~~Y~~A~~y~~~   96 (152)
T 1pc2_A           33 STQFEYAWCLVRSKYNDDIRKGIVLLEELLPKGSKEE----------------QRDYVFYLAVGNYRLKEYEKALKYVRG   96 (152)
T ss_dssp             HHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSCHHH----------------HHHHHHHHHHHHHHTSCHHHHHHHHHH
T ss_pred             HHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCccc----------------hHHHHHHHHHHHHHccCHHHHHHHHHH
Confidence            44556777788766   7889999999999976 421                234799999999999999999999999


Q ss_pred             HHhCCCCCHHHHHHHHHH
Q 017811          259 VLGEDENNVKALFRRGKA  276 (365)
Q Consensus       259 aL~~~p~n~ka~~~~g~a  276 (365)
                      +|+++|+|..|..-+-.+
T Consensus        97 lL~ieP~n~QA~~Lk~~i  114 (152)
T 1pc2_A           97 LLQTEPQNNQAKELERLI  114 (152)
T ss_dssp             HHHHCTTCHHHHHHHHHH
T ss_pred             HHhcCCCCHHHHHHHHHH
Confidence            999999999887665444

>3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A

Probab=98.09  E-value=5.1e-05  Score=71.12  Aligned_cols=117  Identities=11%  Similarity=-0.013  Sum_probs=83.1

Q ss_pred             Hhhhhhhhhhh---hhhHHHHHHHHHHHHHhhccchhhhh---------------hhhHHHH----HH--------Hhhc
Q 017811          184 RRKMDGNALFK---EEKLEEAMQQYEMAIAYMGDDFMFQL---------------FGKYRDM----AL--------AVKN  233 (365)
Q Consensus       184 ~~k~~G~~~~~---~~~y~~A~~~y~~al~~~~~~~~~~~---------------~~~~~~~----~~--------~~~~  233 (365)
                      .+.-+|..++.   ...+.+|+.+|++|+++.|+....--               .......    ..        ....
T Consensus       198 dl~Lra~~~l~~~~~~~~~~A~~l~e~Al~lDP~~a~A~A~la~a~~~~~~~~~~~~~~~~~l~~a~~a~~a~~~~~~~a  277 (372)
T 3ly7_A          198 TNFYQAHDYLLHGDDKSLNRASELLGEIVQSSPEFTYARAEKALVDIVRHSQHPLDEKQLAALNTEIDNIVTLPELNNLS  277 (372)
T ss_dssp             HHHHHHHHHHHHCSHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHTCGGGTTCH
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhccCCCchhhHHHHHHHHHHHHhcccCCcCH
Confidence            34456666655   45578999999999999997432100               0000000    00        0111


Q ss_pred             hhhhHHHHHHHHhcCHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCcH
Q 017811          234 PCHLNMAACLLKLKRYEEAIGQCSLVLGEDENNVKALFRRGKARAELGQTDAAREDFLKAGKFAPEDK  301 (365)
Q Consensus       234 ~~~~nla~~~~kl~~~~~A~~~~~~aL~~~p~n~ka~~~~g~a~~~l~~~~~A~~~l~~al~l~P~n~  301 (365)
                      .+|.-+|.+++..|++++|+..+++++.++| ++-+|..+|.++...|++++|+..|.+|+.++|..+
T Consensus       278 ~~~~alal~~l~~gd~d~A~~~l~rAl~Ln~-s~~a~~llG~~~~~~G~~~eA~e~~~~AlrL~P~~~  344 (372)
T 3ly7_A          278 IIYQIKAVSALVKGKTDESYQAINTGIDLEM-SWLNYVLLGKVYEMKGMNREAADAYLTAFNLRPGAN  344 (372)
T ss_dssp             HHHHHHHHHHHHHTCHHHHHHHHHHHHHHCC-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSCSHH
T ss_pred             HHHHHHHHHHHhCCCHHHHHHHHHHHHhcCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCcC
Confidence            2445567777778999999999999999986 577888999999999999999999999999999864

>3o48_A Mitochondria fission 1 protein; tetratricopeptide repeat fold, TPR, scaffold, peroxisome, membrane fission, protein binding; 1.75A {Saccharomyces cerevisiae} PDB: 2pqr_A 2pqn_A 3uux_A

Probab=98.08  E-value=2e-05  Score=62.41  Aligned_cols=83  Identities=13%  Similarity=0.108  Sum_probs=72.1

Q ss_pred             hhhhHHHHHHHHhcCH---HHHHHHHHHHHhCCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCcHHHHHHHHH
Q 017811          234 PCHLNMAACLLKLKRY---EEAIGQCSLVLGEDEN-NVKALFRRGKARAELGQTDAAREDFLKAGKFAPEDKSIARELRL  309 (365)
Q Consensus       234 ~~~~nla~~~~kl~~~---~~A~~~~~~aL~~~p~-n~ka~~~~g~a~~~l~~~~~A~~~l~~al~l~P~n~~~~~~l~~  309 (365)
                      .+.+|+|.|+.+..+.   .++|..+...+..+|. ....+|.+|.+++.+|+|++|+.+...+|+++|+|..+......
T Consensus        41 qt~F~yAw~Lv~S~~~~d~~~GI~LLe~l~~~~~~~~Rd~LYyLAvg~yklgdY~~Ar~y~d~lL~~eP~N~QA~~Lk~~  120 (134)
T 3o48_A           41 QSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHERNNKQVGALKSM  120 (134)
T ss_dssp             HHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTCTTCHHHHHHHHH
T ss_pred             hhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCcchhHHHHHHHHHHHHHhhhHHHHHHHHHHHHhhCCCCHHHHHHHHH
Confidence            3588999999998754   5789999999988884 57899999999999999999999999999999999999988877


Q ss_pred             HHHHHHH
Q 017811          310 LAEHEKA  316 (365)
Q Consensus       310 l~~~~~~  316 (365)
                      +..+..+
T Consensus       121 Ie~ki~k  127 (134)
T 3o48_A          121 VEDKIQK  127 (134)
T ss_dssp             HHHHHHH
T ss_pred             HHHHHHh
Confidence            7665543

>3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens}

Probab=98.07  E-value=2.3e-05  Score=76.01  Aligned_cols=101  Identities=16%  Similarity=0.031  Sum_probs=67.8

Q ss_pred             hhhhhhhhhh----hhHHHHHHHHHHHHHhhccchhhhhhhhHHHHHHHhhchhhhHHHHH-H--HHhcCHHHHHHHHHH
Q 017811          186 KMDGNALFKE----EKLEEAMQQYEMAIAYMGDDFMFQLFGKYRDMALAVKNPCHLNMAAC-L--LKLKRYEEAIGQCSL  258 (365)
Q Consensus       186 k~~G~~~~~~----~~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~-~--~kl~~~~~A~~~~~~  258 (365)
                      ...|..+...    +++.+|+..|++++   +.+..                 ++++||.+ |  ...+++++|+.++++
T Consensus       217 ~~Lg~~y~~g~~~~~d~~~A~~~~~~aa---~g~~~-----------------a~~~Lg~~~~~~~~~~d~~~A~~~~~~  276 (452)
T 3e4b_A          217 DSVARVLGDATLGTPDEKTAQALLEKIA---PGYPA-----------------SWVSLAQLLYDFPELGDVEQMMKYLDN  276 (452)
T ss_dssp             HHHHHHHTCGGGSSCCHHHHHHHHHHHG---GGSTH-----------------HHHHHHHHHHHSGGGCCHHHHHHHHHH
T ss_pred             HHHHHHHhCCCCCCCCHHHHHHHHHHHc---CCCHH-----------------HHHHHHHHHHhCCCCCCHHHHHHHHHH
Confidence            4455665544    68999999999988   44322                 36677776 3  356677777777777


Q ss_pred             HHhCCCCCHHHHHHHHHHHHHcC-----CHHHHHHHHHHHHhhCCCcHHHHHHHHHHHH
Q 017811          259 VLGEDENNVKALFRRGKARAELG-----QTDAAREDFLKAGKFAPEDKSIARELRLLAE  312 (365)
Q Consensus       259 aL~~~p~n~ka~~~~g~a~~~l~-----~~~~A~~~l~~al~l~P~n~~~~~~l~~l~~  312 (365)
                      +++.  .++.+++++|.+|. .|     ++++|+.+|+++.   |++..+...|+.+..
T Consensus       277 Aa~~--g~~~A~~~Lg~~y~-~G~g~~~d~~~A~~~~~~Aa---~g~~~A~~~Lg~~y~  329 (452)
T 3e4b_A          277 GRAA--DQPRAELLLGKLYY-EGKWVPADAKAAEAHFEKAV---GREVAADYYLGQIYR  329 (452)
T ss_dssp             HHHT--TCHHHHHHHHHHHH-HCSSSCCCHHHHHHHHHTTT---TTCHHHHHHHHHHHH
T ss_pred             HHHC--CCHHHHHHHHHHHH-cCCCCCCCHHHHHHHHHHHh---CCCHHHHHHHHHHHH
Confidence            7644  36777777777776 44     7777777777776   666777766666654

>1y8m_A FIS1; mitochondria, unknown function; NMR {Saccharomyces cerevisiae} SCOP: a.118.8.1

Probab=98.06  E-value=3.9e-05  Score=61.53  Aligned_cols=81  Identities=14%  Similarity=0.106  Sum_probs=70.2

Q ss_pred             hhhhHHHHHHHHhcCH---HHHHHHHHHHHhCCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCcHHHHHHHHH
Q 017811          234 PCHLNMAACLLKLKRY---EEAIGQCSLVLGEDEN-NVKALFRRGKARAELGQTDAAREDFLKAGKFAPEDKSIARELRL  309 (365)
Q Consensus       234 ~~~~nla~~~~kl~~~---~~A~~~~~~aL~~~p~-n~ka~~~~g~a~~~l~~~~~A~~~l~~al~l~P~n~~~~~~l~~  309 (365)
                      .+.+|+|.|+.+..+.   .++|..+...+...|. ....+|.+|.+++.+|+|++|+.+...+|+++|+|..+......
T Consensus        40 ~t~F~YAw~Lv~S~~~~di~~GI~LLe~l~~~~~~~~RdcLYyLAvg~ykl~~Y~~Ar~y~d~lL~~eP~n~QA~~Lk~~  119 (144)
T 1y8m_A           40 QSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHERNNKQVGALKSM  119 (144)
T ss_dssp             HHHHHHHHHHHHSSSHHHHHHHHHHHHHHHHHCCSTHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHTCCCCHHHHHHHHH
T ss_pred             HHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCccchhHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCCcHHHHHHHHH
Confidence            3488999999998754   5788899999998884 56899999999999999999999999999999999999887776


Q ss_pred             HHHHH
Q 017811          310 LAEHE  314 (365)
Q Consensus       310 l~~~~  314 (365)
                      +..+.
T Consensus       120 Ie~~i  124 (144)
T 1y8m_A          120 VEDKI  124 (144)
T ss_dssp             HHHHH
T ss_pred             HHHHH
Confidence            65443

>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A

Probab=97.94  E-value=4.6e-05  Score=82.05  Aligned_cols=108  Identities=18%  Similarity=0.109  Sum_probs=82.4

Q ss_pred             hhhhhhhhhhhhHHHHHHHHHHHHHhhcc-chhhhhhhhHHHHHHH-----hhchhhhHHHHHHHHhcCHHHHHHHHHHH
Q 017811          186 KMDGNALFKEEKLEEAMQQYEMAIAYMGD-DFMFQLFGKYRDMALA-----VKNPCHLNMAACLLKLKRYEEAIGQCSLV  259 (365)
Q Consensus       186 k~~G~~~~~~~~y~~A~~~y~~al~~~~~-~~~~~~~~~~~~~~~~-----~~~~~~~nla~~~~kl~~~~~A~~~~~~a  259 (365)
                      .+.|..+...|.|++|+..|+++-..... ........ ..+...+     -...+|+++|.++...|+|++|+..|.++
T Consensus      1053 ~eIA~Iai~lglyEEAf~IYkKa~~~~~A~~VLie~i~-nldrAiE~Aervn~p~vWsqLAKAql~~G~~kEAIdsYiKA 1131 (1630)
T 1xi4_A         1053 PDIANIAISNELFEEAFAIFRKFDVNTSAVQVLIEHIG-NLDRAYEFAERCNEPAVWSQLAKAQLQKGMVKEAIDSYIKA 1131 (1630)
T ss_pred             HHHHHHHHhCCCHHHHHHHHHHcCCHHHHHHHHHHHHh-hHHHHHHHHHhcCCHHHHHHHHHHHHhCCCHHHHHHHHHhc
Confidence            44699999999999999999998532221 11110000 1111111     12467999999999999999999999876


Q ss_pred             HhCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC
Q 017811          260 LGEDENNVKALFRRGKARAELGQTDAAREDFLKAGKFAPE  299 (365)
Q Consensus       260 L~~~p~n~ka~~~~g~a~~~l~~~~~A~~~l~~al~l~P~  299 (365)
                           +++.+|++.|.++..+|+|++|+..|..|.+..++
T Consensus      1132 -----dD~say~eVa~~~~~lGkyEEAIeyL~mArk~~~e 1166 (1630)
T 1xi4_A         1132 -----DDPSSYMEVVQAANTSGNWEELVKYLQMARKKARE 1166 (1630)
T ss_pred             -----CChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhccc
Confidence                 89999999999999999999999999999998854

>3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B

Probab=97.85  E-value=8.3e-05  Score=68.23  Aligned_cols=145  Identities=9%  Similarity=-0.057  Sum_probs=96.4

Q ss_pred             hhhhhhhhhhhhHHHHHHHHHHHHHhhc--cchhhhh-----------hhhHHHHH---HHhh-------chhhhHHHHH
Q 017811          186 KMDGNALFKEEKLEEAMQQYEMAIAYMG--DDFMFQL-----------FGKYRDMA---LAVK-------NPCHLNMAAC  242 (365)
Q Consensus       186 k~~G~~~~~~~~y~~A~~~y~~al~~~~--~~~~~~~-----------~~~~~~~~---~~~~-------~~~~~nla~~  242 (365)
                      ...|..+...|++++|++.|.++|...|  .....-.           .+.-...+   ....       ..+..+++.+
T Consensus       104 ~~la~i~~~~g~~eeAL~~l~~~i~~~~~~~~lea~~l~vqi~L~~~r~d~A~k~l~~~~~~~~d~~~~~d~~l~~Laea  183 (310)
T 3mv2_B          104 YLLATAQAILGDLDKSLETCVEGIDNDEAEGTTELLLLAIEVALLNNNVSTASTIFDNYTNAIEDTVSGDNEMILNLAES  183 (310)
T ss_dssp             HHHHHHHHHHTCHHHHHHHHHHHHTSSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHcCCHHHHHHHHHHHhccCCCcCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCccccccchHHHHHHHHH
Confidence            4677888888888888888888866554  3221100           01111111   1111       2456777655


Q ss_pred             --HHHhc--CHHHHHHHHHHHHhCCCC--CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh----------CCCcHHHHHH
Q 017811          243 --LLKLK--RYEEAIGQCSLVLGEDEN--NVKALFRRGKARAELGQTDAAREDFLKAGKF----------APEDKSIARE  306 (365)
Q Consensus       243 --~~kl~--~~~~A~~~~~~aL~~~p~--n~ka~~~~g~a~~~l~~~~~A~~~l~~al~l----------~P~n~~~~~~  306 (365)
                        .+..|  ++.+|...|++++...|+  +...++.   +++.+|+|++|...++.++++          +|+|+.+...
T Consensus       184 ~v~l~~g~~~~q~A~~~f~El~~~~p~~~~~~lLln---~~~~~g~~~eAe~~L~~l~~~~p~~~~k~~~~p~~~~~LaN  260 (310)
T 3mv2_B          184 YIKFATNKETATSNFYYYEELSQTFPTWKTQLGLLN---LHLQQRNIAEAQGIVELLLSDYYSVEQKENAVLYKPTFLAN  260 (310)
T ss_dssp             HHHHHHTCSTTTHHHHHHHHHHTTSCSHHHHHHHHH---HHHHHTCHHHHHHHHHHHHSHHHHTTTCHHHHSSHHHHHHH
T ss_pred             HHHHHhCCccHHHHHHHHHHHHHhCCCcccHHHHHH---HHHHcCCHHHHHHHHHHHHHhcccccccccCCCCCHHHHHH
Confidence              66567  899999999999888886  3445555   899999999999999988887          5889888877


Q ss_pred             HHHHHHHHHHHHHHHHHHHhcccCCCCCcc
Q 017811          307 LRLLAEHEKAVYKKQKEIYKGIFGPRPEPK  336 (365)
Q Consensus       307 l~~l~~~~~~~~~~~k~~y~kmf~~~~~~~  336 (365)
                      +..|....++   ...+.+.++....|+..
T Consensus       261 ~i~l~~~lgk---~a~~l~~qL~~~~P~hp  287 (310)
T 3mv2_B          261 QITLALMQGL---DTEDLTNQLVKLDHEHA  287 (310)
T ss_dssp             HHHHHHHTTC---TTHHHHHHHHHTTCCCH
T ss_pred             HHHHHHHhCh---HHHHHHHHHHHhCCCCh
Confidence            6656555554   34566666666666543

>3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B

Probab=97.83  E-value=0.00012  Score=67.20  Aligned_cols=117  Identities=11%  Similarity=0.057  Sum_probs=86.7

Q ss_pred             HHHHHHHHHHhhccchhhhhhhhHHHHHHHhhchhhhHHHHHHHHhcCHHHHHHHHHHHHhCCC--CCHHHHHHHHHHHH
Q 017811          201 AMQQYEMAIAYMGDDFMFQLFGKYRDMALAVKNPCHLNMAACLLKLKRYEEAIGQCSLVLGEDE--NNVKALFRRGKARA  278 (365)
Q Consensus       201 A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~kl~~~~~A~~~~~~aL~~~p--~n~ka~~~~g~a~~  278 (365)
                      |+..+++.+...+....                 .++.+|.++...|++++|+..|.++|..+|  .+..++...+++++
T Consensus        85 a~~~l~~l~~~~~~~~~-----------------~~~~la~i~~~~g~~eeAL~~l~~~i~~~~~~~~lea~~l~vqi~L  147 (310)
T 3mv2_B           85 NIEELENLLKDKQNSPY-----------------ELYLLATAQAILGDLDKSLETCVEGIDNDEAEGTTELLLLAIEVAL  147 (310)
T ss_dssp             CCHHHHHTTTTSCCCHH-----------------HHHHHHHHHHHHTCHHHHHHHHHHHHTSSCSTTHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHhcCCCCcH-----------------HHHHHHHHHHHcCCHHHHHHHHHHHhccCCCcCcHHHHHHHHHHHH
Confidence            78888887765433321                 256889999999999999999999999997  99999999999999


Q ss_pred             HcCCHHHHHHHHHHHHhhCCC----cHHHHHHHHHH--HHHHH-HHHHHHHHHHhcccCCCCC
Q 017811          279 ELGQTDAAREDFLKAGKFAPE----DKSIARELRLL--AEHEK-AVYKKQKEIYKGIFGPRPE  334 (365)
Q Consensus       279 ~l~~~~~A~~~l~~al~l~P~----n~~~~~~l~~l--~~~~~-~~~~~~k~~y~kmf~~~~~  334 (365)
                      .+|+.+.|.+.++++.+.+|+    +..+...|...  ....+ +..+..-..|..+.+..|+
T Consensus       148 ~~~r~d~A~k~l~~~~~~~~d~~~~~d~~l~~Laea~v~l~~g~~~~q~A~~~f~El~~~~p~  210 (310)
T 3mv2_B          148 LNNNVSTASTIFDNYTNAIEDTVSGDNEMILNLAESYIKFATNKETATSNFYYYEELSQTFPT  210 (310)
T ss_dssp             HTTCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHHTCSTTTHHHHHHHHHHTTSCS
T ss_pred             HCCCHHHHHHHHHHHHhcCccccccchHHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhCCC
Confidence            999999999999999999983    23333344322  33333 1233345668888777765

>3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633}

Probab=97.79  E-value=0.00017  Score=53.90  Aligned_cols=71  Identities=8%  Similarity=-0.017  Sum_probs=63.8

Q ss_pred             CCCCHHHHHHHHHHHHHcCC---HHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCCC
Q 017811          263 DENNVKALFRRGKARAELGQ---TDAAREDFLKAGKFAPEDKSIARELRLLAEHEKAVYKKQKEIYKGIFGPRPE  334 (365)
Q Consensus       263 ~p~n~ka~~~~g~a~~~l~~---~~~A~~~l~~al~l~P~n~~~~~~l~~l~~~~~~~~~~~k~~y~kmf~~~~~  334 (365)
                      +|+|+..++.+|.+++..++   .++|...|+++|.++|++..+...++.+....+++.++. ..|.+++...|.
T Consensus         2 ~p~~~~~~~~~a~al~~~~~~~~~~~A~~~l~~AL~~dp~~~rA~~~lg~~~~~~g~y~~Ai-~~w~~~l~~~p~   75 (93)
T 3bee_A            2 NAVTATQLAAKATTLYYLHKQAMTDEVSLLLEQALQLEPYNEAALSLIANDHFISFRFQEAI-DTWVLLLDSNDP   75 (93)
T ss_dssp             CCCCHHHHHHHHHHHHHTTTTCCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHH-HHHHHHHTCCCT
T ss_pred             CCCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHCcCCHHHHHHHHHHHHHcCCHHHHH-HHHHHHHhhCCC
Confidence            68999999999999987777   799999999999999999999999999988877777555 459999999887

>3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A*

Probab=97.75  E-value=0.00036  Score=62.96  Aligned_cols=110  Identities=11%  Similarity=-0.070  Sum_probs=86.7

Q ss_pred             CHHHHHHHHHHHHhCCCC--CHHHHHHHHHHHHHc-----CCHHHHHHHHHHHHhhCCCc-HHHHHHHHHHHHHHHHHHH
Q 017811          248 RYEEAIGQCSLVLGEDEN--NVKALFRRGKARAEL-----GQTDAAREDFLKAGKFAPED-KSIARELRLLAEHEKAVYK  319 (365)
Q Consensus       248 ~~~~A~~~~~~aL~~~p~--n~ka~~~~g~a~~~l-----~~~~~A~~~l~~al~l~P~n-~~~~~~l~~l~~~~~~~~~  319 (365)
                      ....|....++||++||+  +-.||..+|..|..+     |+.++|...|++|++++|+. ..+...............+
T Consensus       178 ~l~~A~a~lerAleLDP~~~~GsA~~~LG~lY~~vPp~~gGd~ekA~~~ferAL~LnP~~~id~~v~YA~~l~~~~gd~~  257 (301)
T 3u64_A          178 TVHAAVMMLERACDLWPSYQEGAVWNVLTKFYAAAPESFGGGMEKAHTAFEHLTRYCSAHDPDHHITYADALCIPLNNRA  257 (301)
T ss_dssp             HHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHHSCTTTTCCHHHHHHHHHHHHHHCCTTCSHHHHHHHHHTTTTTTCHH
T ss_pred             hHHHHHHHHHHHHHhCCCcccCHHHHHHHHHHHhCCCccCCCHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHhcCCHH
Confidence            467899999999999999  567999999999996     99999999999999999974 8888888876555434445


Q ss_pred             HHHHHHhcccCCCCCcccc----chhHHHHHHHHHHHHHHHH
Q 017811          320 KQKEIYKGIFGPRPEPKQK----KNWLIIFWQLLVSLVLGLF  357 (365)
Q Consensus       320 ~~k~~y~kmf~~~~~~~~~----~~~~~~~~~~~~~~~~~~~  357 (365)
                      ..++.+.+.+..++...+.    ...+.....||+-.+..+|
T Consensus       258 ~a~~~L~kAL~a~p~~~P~~~lan~~~q~eA~~LL~~~~d~F  299 (301)
T 3u64_A          258 GFDEALDRALAIDPESVPHNKLLVILSQKRARWLKAHVQDFF  299 (301)
T ss_dssp             HHHHHHHHHHHCCGGGCSSCHHHHHHHHHHHHHHHHTHHHHC
T ss_pred             HHHHHHHHHHcCCCCCCCChhHHHHHHHHHHHHHHHHhHHhc
Confidence            5567788888887764222    4455566677777766665

>3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens}

Probab=97.75  E-value=0.00029  Score=58.02  Aligned_cols=119  Identities=11%  Similarity=0.034  Sum_probs=88.1

Q ss_pred             HhhhhhhhhhhhhhHHHHHHHHHHHHHhhccchhhhhhhhHHHHHHHhhchhhhHHHHHHHHhcCHHHHHHHHHHHHhCC
Q 017811          184 RRKMDGNALFKEEKLEEAMQQYEMAIAYMGDDFMFQLFGKYRDMALAVKNPCHLNMAACLLKLKRYEEAIGQCSLVLGED  263 (365)
Q Consensus       184 ~~k~~G~~~~~~~~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~kl~~~~~A~~~~~~aL~~~  263 (365)
                      .+.+....++..+.|+.|+-.+..++.+...+...-.        -.....++..+|.+++..++|..|...|++||.+.
T Consensus        22 ~l~dqik~L~d~~LY~sA~~La~lLlSl~~~~~~~~s--------p~~~~~~l~~ladalf~~~eyrrA~~~y~qALq~~   93 (167)
T 3ffl_A           22 NVIDHVRDMAAAGLHSNVRLLSSLLLTLSNNNPELFS--------PPQKYQLLVYHADSLFHDKEYRNAVSKYTMALQQK   93 (167)
T ss_dssp             CHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSTTSSC--------HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhhhHHHHHHHHHHHHHhhcCCccccc--------HHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHH
Confidence            4567778899999999999999998888654332100        12234568999999999999999999999987432


Q ss_pred             ---CC----------------------CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHH
Q 017811          264 ---EN----------------------NVKALFRRGKARAELGQTDAAREDFLKAGKFAPEDKSIARELRLLA  311 (365)
Q Consensus       264 ---p~----------------------n~ka~~~~g~a~~~l~~~~~A~~~l~~al~l~P~n~~~~~~l~~l~  311 (365)
                         +.                      .....|++|.||.+++++++|+..++..-.. -..+.+...|++++
T Consensus        94 k~l~k~~s~~~~~~~~ss~p~s~~~~~e~Elkykia~C~~~l~~~~~Ai~~Le~Ip~k-~Rt~kvnm~LakLy  165 (167)
T 3ffl_A           94 KALSKTSKVRPSTGNSASTPQSQCLPSEIEVKYKLAECYTVLKQDKDAIAILDGIPSR-QRTPKINMLLANLY  165 (167)
T ss_dssp             HCC--------------------CCCCHHHHHHHHHHHHHHTTCHHHHHHHHHTSCGG-GCCHHHHHHHHHHC
T ss_pred             HHHhcCCCccccccccCCCcccccccchHHHHHHHHHHHHHHCCHHHHHHHHhcCCch-hcCHHHHHHHHHHh
Confidence               11                      1268899999999999999999998754221 13566666666653

>3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A*

Probab=97.52  E-value=0.00021  Score=68.90  Aligned_cols=94  Identities=13%  Similarity=0.031  Sum_probs=69.6

Q ss_pred             HHHHHHHhhhhhhhhhhhhhHHHHHHHHHHHHHhhccchhhhhhhhHHHHHHHhhchhhhHHHHHHHHhcCHHHHHHHHH
Q 017811          178 RIGAADRRKMDGNALFKEEKLEEAMQQYEMAIAYMGDDFMFQLFGKYRDMALAVKNPCHLNMAACLLKLKRYEEAIGQCS  257 (365)
Q Consensus       178 ~~~~a~~~k~~G~~~~~~~~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~kl~~~~~A~~~~~  257 (365)
                      ....+..+...|..|..+|+|++|+.+|+++|.+......-    .     .......++|||.+|..+|+|++|+..+.
T Consensus       325 h~~~~~~~~~L~~~y~~~g~~~eA~~~~~~~L~i~~~~lg~----~-----Hp~~a~~l~nLa~~~~~~g~~~eA~~~~~  395 (429)
T 3qwp_A          325 NIYQLKVLDCAMDACINLGLLEEALFYGTRTMEPYRIFFPG----S-----HPVRGVQVMKVGKLQLHQGMFPQAMKNLR  395 (429)
T ss_dssp             SHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHSCS----S-----CHHHHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred             chHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHcCC----C-----ChHHHHHHHHHHHHHHhcCCHHHHHHHHH
Confidence            34556677889999999999999999999999886321100    0     01124569999999999999999999999


Q ss_pred             HHHhC-----CCCCH---HHHHHHHHHHHHc
Q 017811          258 LVLGE-----DENNV---KALFRRGKARAEL  280 (365)
Q Consensus       258 ~aL~~-----~p~n~---ka~~~~g~a~~~l  280 (365)
                      +|+++     -|+++   ..+..++.++..+
T Consensus       396 ~Al~i~~~~lG~~Hp~~~~~~~~l~~~~~e~  426 (429)
T 3qwp_A          396 LAFDIMRVTHGREHSLIEDLILLLEECDANI  426 (429)
T ss_dssp             HHHHHHHHHTCTTSHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHhcCCCChHHHHHHHHHHHHHHHH
Confidence            99864     56654   4556666666544

>3gty_X Trigger factor, TF; chaperone-client complex, cell cycle, cell division, chapero isomerase, rotamase, ribonucleoprotein, binding; 3.40A {Thermotoga maritima} PDB: 3gu0_A

Probab=97.49  E-value=0.00019  Score=69.11  Aligned_cols=75  Identities=5%  Similarity=0.050  Sum_probs=61.6

Q ss_pred             CCCCCEEEEEEEEEEcCCCeeeccCcCCCCcceeecCCCCchhhhHHHHHhcCCcCcEEEEEeccccccCCCCCCCCCCC
Q 017811           67 PSKYSTCFLHYRAWAESTRHKFDDTWLEQQPLEMVLGKEKKEMTGLAIGVSSMKAGEHALLHVGWELGYGKEGSFSFPNV  146 (365)
Q Consensus        67 p~~g~~v~v~y~~~~~~~g~~fd~s~~~~~p~~f~lg~~~~~i~g~e~~l~~Mk~GE~~~~~i~~~~~yg~~g~~~~~~i  146 (365)
                      ...||.|+|+|+++. + |..|+++.  +.++.|.+|.| .  + |+.+|.||++||...|.+..               
T Consensus       155 a~~gD~V~id~~~~~-d-G~~~~~~~--~~~~~l~~g~~-~--~-fe~~liG~k~Ge~~~~~vtF---------------  211 (433)
T 3gty_X          155 AEAGDLVRVNMEVYN-E-EGKKLTSR--EYEYVISEDED-R--P-FVKDLVGKKKGDVVEIEREY---------------  211 (433)
T ss_dssp             CCTTSEEEEEEEEEC-T-TSCEEEEE--EEEEECCSSCC-C--T-THHHHTTCCTTCEEEEEEEE---------------
T ss_pred             cCCCCEEEEEEEEEE-C-CEECcCCC--CCCeEEEecCC-c--h-HHHHhCCCCCCceEEEEEee---------------
Confidence            568999999999984 4 89998753  36888999988 4  3 99999999999999999843               


Q ss_pred             CCCCcEEEEEEEEeeecCc
Q 017811          147 SPMADLVYEVVLIGFDETK  165 (365)
Q Consensus       147 p~~~~l~~~iel~~~~~~~  165 (365)
                       +|.+..|.|.+..+....
T Consensus       212 -aGk~a~F~VtV~~Ik~~~  229 (433)
T 3gty_X          212 -EGKKYTYKLEVEEVYKRT  229 (433)
T ss_dssp             -TTEEEEEEEEEEEEEEEC
T ss_pred             -CCCeEEEEEEEEEEEEec
Confidence             356789999999887643

>3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A*

Probab=97.48  E-value=0.00023  Score=68.68  Aligned_cols=81  Identities=6%  Similarity=-0.046  Sum_probs=62.2

Q ss_pred             HHHHHHhhhhhhhhhhhhhHHHHHHHHHHHHHhhccchhhhhhhhHHHHHHHhhchhhhHHHHHHHHhcCHHHHHHHHHH
Q 017811          179 IGAADRRKMDGNALFKEEKLEEAMQQYEMAIAYMGDDFMFQLFGKYRDMALAVKNPCHLNMAACLLKLKRYEEAIGQCSL  258 (365)
Q Consensus       179 ~~~a~~~k~~G~~~~~~~~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~kl~~~~~A~~~~~~  258 (365)
                      ...+..+.+.|..|..+|+|++|+.+|+++|.+......-    +     .......++|||.+|..+|+|++|+..+.+
T Consensus       337 p~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~----~-----Hp~~a~~l~nLa~~~~~qg~~~eA~~~~~~  407 (433)
T 3qww_A          337 VYMLHMMYQAMGVCLYMQDWEGALKYGQKIIKPYSKHYPV----Y-----SLNVASMWLKLGRLYMGLENKAAGEKALKK  407 (433)
T ss_dssp             HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCS----S-----CHHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHcCC----C-----ChHHHHHHHHHHHHHHhccCHHHHHHHHHH
Confidence            4456667789999999999999999999999886321100    0     001245699999999999999999999999


Q ss_pred             HHhC-----CCCCHH
Q 017811          259 VLGE-----DENNVK  268 (365)
Q Consensus       259 aL~~-----~p~n~k  268 (365)
                      ||++     .|+++.
T Consensus       408 Al~i~~~~lG~~Hp~  422 (433)
T 3qww_A          408 AIAIMEVAHGKDHPY  422 (433)
T ss_dssp             HHHHHHHHTCTTCHH
T ss_pred             HHHHHHHHcCCCChH
Confidence            9864     566654

>2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A*

Probab=97.46  E-value=0.0019  Score=61.27  Aligned_cols=115  Identities=12%  Similarity=0.017  Sum_probs=94.6

Q ss_pred             HHHHhhhhhhhhhhhhhHHHHHHHHHHHHHhhccchhhhh-----hhhHHHHHHHhhchhhhHHHHHHHHhcCHHHHHHH
Q 017811          181 AADRRKMDGNALFKEEKLEEAMQQYEMAIAYMGDDFMFQL-----FGKYRDMALAVKNPCHLNMAACLLKLKRYEEAIGQ  255 (365)
Q Consensus       181 ~a~~~k~~G~~~~~~~~y~~A~~~y~~al~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~nla~~~~kl~~~~~A~~~  255 (365)
                      ....+...|......++...|+..|.+|+.+.......+.     .......+......+...++.+++.+|++.+|+..
T Consensus       114 ~f~~l~~~~~~~~~~~~~~~a~~~l~~Al~L~rG~~L~~~~~~~w~~~~r~~l~~~~~~a~~~~~~~~l~~g~~~~a~~~  193 (388)
T 2ff4_A          114 RFVAEKTAGVHAAAAGRFEQASRHLSAALREWRGPVLDDLRDFQFVEPFATALVEDKVLAHTAKAEAEIACGRASAVIAE  193 (388)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCSSTTGGGTTSTTHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred             HHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhcCCCCCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHH
Confidence            3455556666667788999999999999998755432221     13345667777888889999999999999999999


Q ss_pred             HHHHHhCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 017811          256 CSLVLGEDENNVKALFRRGKARAELGQTDAAREDFLKAGK  295 (365)
Q Consensus       256 ~~~aL~~~p~n~ka~~~~g~a~~~l~~~~~A~~~l~~al~  295 (365)
                      +..++..+|-+..++..+-.+|...|+..+|+..|.++-.
T Consensus       194 l~~~~~~~P~~E~~~~~lm~al~~~Gr~~~Al~~y~~~r~  233 (388)
T 2ff4_A          194 LEALTFEHPYREPLWTQLITAYYLSDRQSDALGAYRRVKT  233 (388)
T ss_dssp             HHHHHHHSTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence            9999999999999999999999999999999999987644

>1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3

Probab=97.27  E-value=0.00027  Score=67.91  Aligned_cols=149  Identities=11%  Similarity=-0.006  Sum_probs=108.7

Q ss_pred             HHHHHHHHHhhhhhhhhhhhhhHHHHHHHHHHHHHhhccchhh--h---hhhhHHHH-HHH----hhchhhhHHHHHHHH
Q 017811          176 EERIGAADRRKMDGNALFKEEKLEEAMQQYEMAIAYMGDDFMF--Q---LFGKYRDM-ALA----VKNPCHLNMAACLLK  245 (365)
Q Consensus       176 ~e~~~~a~~~k~~G~~~~~~~~y~~A~~~y~~al~~~~~~~~~--~---~~~~~~~~-~~~----~~~~~~~nla~~~~k  245 (365)
                      ..-...+..+...|..+++.|+|+.|+..|.+|.  .+..+..  .   ..++.... ...    ....-+..+..+|.+
T Consensus       142 ~~~Y~~a~n~~~LA~~L~~Lg~yq~AVea~~KA~--~~~~Wk~v~~aCv~~~ef~lA~~~~l~L~~~ad~l~~lv~~Yek  219 (449)
T 1b89_A          142 KLLYNNVSNFGRLASTLVHLGEYQAAVDGARKAN--STRTWKEVCFACVDGKEFRLAQMCGLHIVVHADELEELINYYQD  219 (449)
T ss_dssp             HHHHHHTTCHHHHHHHHHTTTCHHHHHHHHHHHT--CHHHHHHHHHHHHHTTCHHHHHHTTTTTTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHhhhHHHHHHHHHHhccHHHHHHHHHHcC--CchhHHHHHHHHHHcCcHHHHHHHHHHHHhCHhhHHHHHHHHHH
Confidence            3455677788899999999999999999999993  2211100  0   00000000 000    000113346689999


Q ss_pred             hcCHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHH--cCCHHHHHHHHHHHHhhCC-----CcHHHHHHHHHHHHHHHHHH
Q 017811          246 LKRYEEAIGQCSLVLGEDENNVKALFRRGKARAE--LGQTDAAREDFLKAGKFAP-----EDKSIARELRLLAEHEKAVY  318 (365)
Q Consensus       246 l~~~~~A~~~~~~aL~~~p~n~ka~~~~g~a~~~--l~~~~~A~~~l~~al~l~P-----~n~~~~~~l~~l~~~~~~~~  318 (365)
                      .|.|++|+..++++|.+++.+...+..+|.+|..  .++..++++.|...+.+.|     .+...+.++..+.....++.
T Consensus       220 ~G~~eEai~lLe~aL~le~ah~~~ftel~il~~ky~p~k~~ehl~~~~~~ini~k~~~~~~~~~~w~e~~~ly~~~~e~d  299 (449)
T 1b89_A          220 RGYFEELITMLEAALGLERAHMGMFTELAILYSKFKPQKMREHLELFWSRVNIPKVLRAAEQAHLWAELVFLYDKYEEYD  299 (449)
T ss_dssp             TTCHHHHHHHHHHHTTSTTCCHHHHHHHHHHHHTTCHHHHHHHHHHHSTTSCHHHHHHHHHTTTCHHHHHHHHHHTTCHH
T ss_pred             CCCHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHhhchHH
Confidence            9999999999999999999999999999988766  5678889999988888888     78888889999988888887


Q ss_pred             HHHHHHHh
Q 017811          319 KKQKEIYK  326 (365)
Q Consensus       319 ~~~k~~y~  326 (365)
                      .+...|..
T Consensus       300 ~A~~tm~~  307 (449)
T 1b89_A          300 NAIITMMN  307 (449)
T ss_dssp             HHHHHHHH
T ss_pred             HHHHHHHh
Confidence            77665443

>1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A

Probab=97.20  E-value=0.0011  Score=52.18  Aligned_cols=43  Identities=21%  Similarity=0.164  Sum_probs=38.1

Q ss_pred             chhhhHHHHHHHHhcCHHHHHHHHHHHHhCCCCCHHHHHHHHH
Q 017811          233 NPCHLNMAACLLKLKRYEEAIGQCSLVLGEDENNVKALFRRGK  275 (365)
Q Consensus       233 ~~~~~nla~~~~kl~~~~~A~~~~~~aL~~~p~n~ka~~~~g~  275 (365)
                      ..+++.||..++++|+|.+|+.+|+.+|+.+|+|..|.--+..
T Consensus        74 Rd~lY~LAvg~yklg~Y~~A~~~~~~lL~~eP~n~QA~~Lk~~  116 (126)
T 1nzn_A           74 RDYVFYLAVGNYRLKEYEKALKYVRGLLQTEPQNNQAKELERL  116 (126)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCCCCHHHHHHHHH
Confidence            4579999999999999999999999999999999987755443

>3o48_A Mitochondria fission 1 protein; tetratricopeptide repeat fold, TPR, scaffold, peroxisome, membrane fission, protein binding; 1.75A {Saccharomyces cerevisiae} PDB: 2pqr_A 2pqn_A 3uux_A

Probab=97.16  E-value=0.0022  Score=50.72  Aligned_cols=64  Identities=11%  Similarity=0.075  Sum_probs=50.0

Q ss_pred             hHHHHHHHHHHHHHhhccchhhhhhhhHHHHHHHhhchhhhHHHHHHHHhcCHHHHHHHHHHHHhCCCCCHHHHHHHHHH
Q 017811          197 KLEEAMQQYEMAIAYMGDDFMFQLFGKYRDMALAVKNPCHLNMAACLLKLKRYEEAIGQCSLVLGEDENNVKALFRRGKA  276 (365)
Q Consensus       197 ~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~kl~~~~~A~~~~~~aL~~~p~n~ka~~~~g~a  276 (365)
                      +..++|..+...++..|..                ...+++.||..++++|+|..|..+++.+|+.+|+|..|.--+..+
T Consensus        58 d~~~GI~LLe~l~~~~~~~----------------~Rd~LYyLAvg~yklgdY~~Ar~y~d~lL~~eP~N~QA~~Lk~~I  121 (134)
T 3o48_A           58 DERLGVKILTDIYKEAESR----------------RRECLYYLTIGCYKLGEYSMAKRYVDTLFEHERNNKQVGALKSMV  121 (134)
T ss_dssp             HHHHHHHHHHHHHHHCGGG----------------HHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTCTTCHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhcCcch----------------hHHHHHHHHHHHHHhhhHHHHHHHHHHHHhhCCCCHHHHHHHHHH
Confidence            4456777777766654422                345799999999999999999999999999999999876654443

>1y8m_A FIS1; mitochondria, unknown function; NMR {Saccharomyces cerevisiae} SCOP: a.118.8.1

Probab=97.04  E-value=0.0028  Score=50.72  Aligned_cols=63  Identities=11%  Similarity=0.076  Sum_probs=49.4

Q ss_pred             hHHHHHHHHHHHHHhhccchhhhhhhhHHHHHHHhhchhhhHHHHHHHHhcCHHHHHHHHHHHHhCCCCCHHHHHHHHH
Q 017811          197 KLEEAMQQYEMAIAYMGDDFMFQLFGKYRDMALAVKNPCHLNMAACLLKLKRYEEAIGQCSLVLGEDENNVKALFRRGK  275 (365)
Q Consensus       197 ~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~kl~~~~~A~~~~~~aL~~~p~n~ka~~~~g~  275 (365)
                      +-.++|..++..+...|..                ...|++.||..++++|+|.+|..+|+.+|+.+|+|..|.--+..
T Consensus        57 di~~GI~LLe~l~~~~~~~----------------~RdcLYyLAvg~ykl~~Y~~Ar~y~d~lL~~eP~n~QA~~Lk~~  119 (144)
T 1y8m_A           57 DERLGVKILTDIYKEAESR----------------RRECLYYLTIGCYKLGEYSMAKRYVDTLFEHERNNKQVGALKSM  119 (144)
T ss_dssp             HHHHHHHHHHHHHHHCCST----------------HHHHHHHHHHHHHTTTCHHHHHHHHHHHHHTCCCCHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhcCccc----------------hhHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCCcHHHHHHHHH
Confidence            3446777777776654432                24479999999999999999999999999999999887655443

>4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A

Probab=96.95  E-value=0.014  Score=59.29  Aligned_cols=99  Identities=5%  Similarity=-0.046  Sum_probs=78.3

Q ss_pred             hhhHHHHHHHHhcCHHHHHHHHHHHHhC-CCCCHHHHHHHHHHHHHcCC-HHHHHHHHHHHHhhCCCcHHHHHHHHHHHH
Q 017811          235 CHLNMAACLLKLKRYEEAIGQCSLVLGE-DENNVKALFRRGKARAELGQ-TDAAREDFLKAGKFAPEDKSIARELRLLAE  312 (365)
Q Consensus       235 ~~~nla~~~~kl~~~~~A~~~~~~aL~~-~p~n~ka~~~~g~a~~~l~~-~~~A~~~l~~al~l~P~n~~~~~~l~~l~~  312 (365)
                      ++...+.+..+.+..+.|...+.+|++. .+...+.|...|......++ ++.|...|.++++..|+++........+..
T Consensus       436 vWi~y~~~erR~~~l~~AR~vf~~A~~~~~~~~~~lyi~~A~lE~~~~~d~e~Ar~ife~~Lk~~p~~~~~w~~y~~fe~  515 (679)
T 4e6h_A          436 VYCVYMNTMKRIQGLAASRKIFGKCRRLKKLVTPDIYLENAYIEYHISKDTKTACKVLELGLKYFATDGEYINKYLDFLI  515 (679)
T ss_dssp             HHHHHHHHHHHHHCHHHHHHHHHHHHHTGGGSCTHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHCCCchHHHHHHHHHHH
Confidence            4666677777889999999999999988 55567778777777767654 999999999999999999988766665544


Q ss_pred             HHHHHHHHHHHHHhcccCCCCC
Q 017811          313 HEKAVYKKQKEIYKGIFGPRPE  334 (365)
Q Consensus       313 ~~~~~~~~~k~~y~kmf~~~~~  334 (365)
                      ..+ ...+.|..|.+.+...++
T Consensus       516 ~~~-~~~~AR~lferal~~~~~  536 (679)
T 4e6h_A          516 YVN-EESQVKSLFESSIDKISD  536 (679)
T ss_dssp             HHT-CHHHHHHHHHHHTTTSSS
T ss_pred             hCC-CHHHHHHHHHHHHHhcCC
Confidence            333 356788999999988775

>4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A

Probab=96.67  E-value=0.0086  Score=60.96  Aligned_cols=136  Identities=10%  Similarity=-0.017  Sum_probs=99.5

Q ss_pred             hhhhhhhhhhhhhHHHHHHHHHHHHHhhccchhhhhhhhHHHHHHHhhchhhhHHHHHHHHhc-CHHHHHHHHHHHHhCC
Q 017811          185 RKMDGNALFKEEKLEEAMQQYEMAIAYMGDDFMFQLFGKYRDMALAVKNPCHLNMAACLLKLK-RYEEAIGQCSLVLGED  263 (365)
Q Consensus       185 ~k~~G~~~~~~~~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~kl~-~~~~A~~~~~~aL~~~  263 (365)
                      +...++...+.+..+.|...|.+|+...|...                ..+|...|....+.+ +++.|...|..+|+..
T Consensus       437 Wi~y~~~erR~~~l~~AR~vf~~A~~~~~~~~----------------~~lyi~~A~lE~~~~~d~e~Ar~ife~~Lk~~  500 (679)
T 4e6h_A          437 YCVYMNTMKRIQGLAASRKIFGKCRRLKKLVT----------------PDIYLENAYIEYHISKDTKTACKVLELGLKYF  500 (679)
T ss_dssp             HHHHHHHHHHHHCHHHHHHHHHHHHHTGGGSC----------------THHHHHHHHHHHTTTSCCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCC----------------hHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHC
Confidence            44444555567888999999999998743211                123666666666665 4999999999999999


Q ss_pred             CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC---cHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCCCccc
Q 017811          264 ENNVKALFRRGKARAELGQTDAAREDFLKAGKFAPE---DKSIARELRLLAEHEKAVYKKQKEIYKGIFGPRPEPKQ  337 (365)
Q Consensus       264 p~n~ka~~~~g~a~~~l~~~~~A~~~l~~al~l~P~---n~~~~~~l~~l~~~~~~~~~~~k~~y~kmf~~~~~~~~  337 (365)
                      |+++..+...+......|+.+.|...|++|+...|+   ...+...........+. .+..++++++|....|+...
T Consensus       501 p~~~~~w~~y~~fe~~~~~~~~AR~lferal~~~~~~~~~~~lw~~~~~fE~~~G~-~~~~~~v~~R~~~~~P~~~~  576 (679)
T 4e6h_A          501 ATDGEYINKYLDFLIYVNEESQVKSLFESSIDKISDSHLLKMIFQKVIFFESKVGS-LNSVRTLEKRFFEKFPEVNK  576 (679)
T ss_dssp             TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHTTTSSSTTHHHHHHHHHHHHHHHTCC-SHHHHHHHHHHHHHSTTCCH
T ss_pred             CCchHHHHHHHHHHHhCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHcCC-HHHHHHHHHHHHHhCCCCcH
Confidence            999998889999999999999999999999999884   45555555555443333 33566777777766676543

>3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens}

Probab=96.55  E-value=0.0085  Score=49.25  Aligned_cols=96  Identities=15%  Similarity=0.148  Sum_probs=62.3

Q ss_pred             HHHHhhhhhhhhhhhhhHHHHHHHHHHHHHhhcc---chhh----hhhhhHH-HHHHHhhchhhhHHHHHHHHhcCHHHH
Q 017811          181 AADRRKMDGNALFKEEKLEEAMQQYEMAIAYMGD---DFMF----QLFGKYR-DMALAVKNPCHLNMAACLLKLKRYEEA  252 (365)
Q Consensus       181 ~a~~~k~~G~~~~~~~~y~~A~~~y~~al~~~~~---~~~~----~~~~~~~-~~~~~~~~~~~~nla~~~~kl~~~~~A  252 (365)
                      .+..+.-.|+.+|..++|.+|...|++||.+...   ....    ....... ......-..+.+.+|.||++++++.+|
T Consensus        62 ~~~~l~~ladalf~~~eyrrA~~~y~qALq~~k~l~k~~s~~~~~~~~ss~p~s~~~~~e~Elkykia~C~~~l~~~~~A  141 (167)
T 3ffl_A           62 KYQLLVYHADSLFHDKEYRNAVSKYTMALQQKKALSKTSKVRPSTGNSASTPQSQCLPSEIEVKYKLAECYTVLKQDKDA  141 (167)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHCC--------------------CCCCHHHHHHHHHHHHHHTTCHHHH
T ss_pred             HHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHhcCCCccccccccCCCcccccccchHHHHHHHHHHHHHHCCHHHH
Confidence            3667788999999999999999999999877642   1100    0000000 000000124688999999999999999


Q ss_pred             HHHHHHHHhCCCCCHHHHHHHHHHH
Q 017811          253 IGQCSLVLGEDENNVKALFRRGKAR  277 (365)
Q Consensus       253 ~~~~~~aL~~~p~n~ka~~~~g~a~  277 (365)
                      +...+.+ -....+++.-.-+|+.|
T Consensus       142 i~~Le~I-p~k~Rt~kvnm~LakLy  165 (167)
T 3ffl_A          142 IAILDGI-PSRQRTPKINMLLANLY  165 (167)
T ss_dssp             HHHHHTS-CGGGCCHHHHHHHHHHC
T ss_pred             HHHHhcC-CchhcCHHHHHHHHHHh
Confidence            9976543 22335777777777654

>4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A

Probab=96.12  E-value=0.1  Score=42.15  Aligned_cols=115  Identities=10%  Similarity=0.044  Sum_probs=85.5

Q ss_pred             HHHHHHhhhhhhhhhhhhhHHHHHHHHHHHHHhhccchhhhhhhhHHHHHHHhhchhhhHHHHHHHHhcCHHHHHHHHHH
Q 017811          179 IGAADRRKMDGNALFKEEKLEEAMQQYEMAIAYMGDDFMFQLFGKYRDMALAVKNPCHLNMAACLLKLKRYEEAIGQCSL  258 (365)
Q Consensus       179 ~~~a~~~k~~G~~~~~~~~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~kl~~~~~A~~~~~~  258 (365)
                      ...+..+-..|+.+-. +-.++-+..|++|+...|... ...-        .-.+.++.+.|.- ..+++.++|...|+.
T Consensus        17 ~~yl~llE~~g~p~~d-~~l~rlrd~YerAia~~Pp~k-~~~w--------rrYI~LWIrYA~~-~ei~D~d~aR~vy~~   85 (161)
T 4h7y_A           17 LSLLLKLEKNSVPLSD-ALLNKLIGRYSQAIEALPPDK-YGQN--------ESFARIQVRFAEL-KAIQEPDDARDYFQM   85 (161)
T ss_dssp             HHHHHHHHHHTCSCCH-HHHHHHHHHHHHHHHHSCGGG-GTTC--------HHHHHHHHHHHHH-HHHHCGGGCHHHHHH
T ss_pred             HHHHHHHHHcCCCchh-hHHHHHHHHHHHHHHcCCccc-cccH--------HHHHHHHHHHHHH-HHhcCHHHHHHHHHH
Confidence            3334444444555444 555788899999999998752 1100        1123456666644 677999999999999


Q ss_pred             HHhCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCcHHHH
Q 017811          259 VLGEDENNVKALFRRGKARAELGQTDAAREDFLKAGKFAPEDKSIA  304 (365)
Q Consensus       259 aL~~~p~n~ka~~~~g~a~~~l~~~~~A~~~l~~al~l~P~n~~~~  304 (365)
                      ++.+....+|.|.-.|+--...|+...|...+.+|+.+.|...+..
T Consensus        86 a~~~hKkFAKiwi~~AqFEiRqgnl~kARkILg~AiG~~~k~~~~l  131 (161)
T 4h7y_A           86 ARANCKKFAFVHISFAQFELSQGNVKKSKQLLQKAVERGAVPLEML  131 (161)
T ss_dssp             HHHHCTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBCHHHH
T ss_pred             HHHHhHHHHHHHHHHHHHHHHcccHHHHHHHHHHHhccCCCcHHHH
Confidence            9988878889999999999999999999999999999999876543

>3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A

Probab=95.94  E-value=0.021  Score=53.37  Aligned_cols=69  Identities=10%  Similarity=0.047  Sum_probs=57.1

Q ss_pred             hhhhhhhhhhhHHHHHHHHHHHHHhhccchhhhhhhhHHHHHHHhhchhhhHHHHHHHHhcCHHHHHHHHHHHHhCCCCC
Q 017811          187 MDGNALFKEEKLEEAMQQYEMAIAYMGDDFMFQLFGKYRDMALAVKNPCHLNMAACLLKLKRYEEAIGQCSLVLGEDENN  266 (365)
Q Consensus       187 ~~G~~~~~~~~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~kl~~~~~A~~~~~~aL~~~p~n  266 (365)
                      ..|..++..|++++|+..+++|+.++|. +.                 .|.-+|.++.-.|++++|+..+.+|+.++|..
T Consensus       282 alal~~l~~gd~d~A~~~l~rAl~Ln~s-~~-----------------a~~llG~~~~~~G~~~eA~e~~~~AlrL~P~~  343 (372)
T 3ly7_A          282 IKAVSALVKGKTDESYQAINTGIDLEMS-WL-----------------NYVLLGKVYEMKGMNREAADAYLTAFNLRPGA  343 (372)
T ss_dssp             HHHHHHHHHTCHHHHHHHHHHHHHHCCC-HH-----------------HHHHHHHHHHHTTCHHHHHHHHHHHHHHSCSH
T ss_pred             HHHHHHHhCCCHHHHHHHHHHHHhcCCC-HH-----------------HHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCc
Confidence            3556677789999999999999999864 21                 37788999999999999999999999999966


Q ss_pred             HHHHHHHH
Q 017811          267 VKALFRRG  274 (365)
Q Consensus       267 ~ka~~~~g  274 (365)
                      . .|+...
T Consensus       344 ~-t~~~~~  350 (372)
T 3ly7_A          344 N-TLYWIE  350 (372)
T ss_dssp             H-HHHHHH
T ss_pred             C-hHHHHh
Confidence            5 555433

>4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae}

Probab=95.32  E-value=0.071  Score=54.59  Aligned_cols=58  Identities=12%  Similarity=0.065  Sum_probs=51.9

Q ss_pred             hhHHHHHHHHhcCHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 017811          236 HLNMAACLLKLKRYEEAIGQCSLVLGEDENNVKALFRRGKARAELGQTDAAREDFLKA  293 (365)
Q Consensus       236 ~~nla~~~~kl~~~~~A~~~~~~aL~~~p~n~ka~~~~g~a~~~l~~~~~A~~~l~~a  293 (365)
                      +.--|.-++..|+|+-|+..+++|+..-|....+|++++.+|..+|+|+.|+-.+..+
T Consensus       340 L~~Qa~FLl~K~~~elAL~~Ak~AV~~aPseF~tW~~La~vYi~l~d~e~ALLtLNSc  397 (754)
T 4gns_B          340 LNIQTNFLLNRGDYELALGVSNTSTELALDSFESWYNLARCHIKKEEYEKALFAINSM  397 (754)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHS
T ss_pred             HHHHHHHHhccCcHHHHHHHHHHHHhcCchhhHHHHHHHHHHHHhccHHHHHHHHhcC
Confidence            3334666677899999999999999999999999999999999999999999888776

>1zbp_A Hypothetical protein VPA1032; alpha-beta protein, structural genomics, PSI, protein struct initiative; 2.40A {Vibrio parahaemolyticus} SCOP: e.61.1.1

Probab=95.24  E-value=0.14  Score=45.45  Aligned_cols=69  Identities=17%  Similarity=0.089  Sum_probs=62.6

Q ss_pred             HHHHhcCHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCcHHHHHHHHHH
Q 017811          242 CLLKLKRYEEAIGQCSLVLGEDENNVKALFRRGKARAELGQTDAAREDFLKAGKFAPEDKSIARELRLL  310 (365)
Q Consensus       242 ~~~kl~~~~~A~~~~~~aL~~~p~n~ka~~~~g~a~~~l~~~~~A~~~l~~al~l~P~n~~~~~~l~~l  310 (365)
                      -.++.+..++|+..+...++.+|.|.+....+-+.+.-.|+|+.|..-++.+.+++|+.......++.+
T Consensus         6 ~ll~~g~L~~al~~~~~~VR~~P~da~~R~~LfqLLcv~G~w~RA~~QL~~~a~l~p~~~~~a~~yr~l   74 (273)
T 1zbp_A            6 NALSEGQLQQALELLIEAIKASPKDASLRSSFIELLCIDGDFERADEQLMQSIKLFPEYLPGASQLRHL   74 (273)
T ss_dssp             HHTTTTCHHHHHHHHHHHHHTCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCGGGHHHHHHHHHH
T ss_pred             HHHhCCCHHHHHHHHHHHHHhCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCchhhHHHHHHHHH
Confidence            456889999999999999999999999999999999999999999999999999999987766565544

>2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B

Probab=95.04  E-value=0.77  Score=44.57  Aligned_cols=141  Identities=12%  Similarity=0.043  Sum_probs=94.0

Q ss_pred             hhhhhhhhhhhhhHHHHHHHHHHHHHhhccchhhhh----h---hhHHHHHHH----------------hhchhhhHHHH
Q 017811          185 RKMDGNALFKEEKLEEAMQQYEMAIAYMGDDFMFQL----F---GKYRDMALA----------------VKNPCHLNMAA  241 (365)
Q Consensus       185 ~k~~G~~~~~~~~y~~A~~~y~~al~~~~~~~~~~~----~---~~~~~~~~~----------------~~~~~~~nla~  241 (365)
                      +..-+.-+...|+.+.|...|.+|+.. |.+...-.    .   ++..+.+..                ....++.+.+.
T Consensus       216 W~~ya~~~~~~~~~~~ar~i~erAi~~-P~~~~l~~~y~~~~e~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~lw~~y~~  294 (493)
T 2uy1_A          216 YFFYSEYLIGIGQKEKAKKVVERGIEM-SDGMFLSLYYGLVMDEEAVYGDLKRKYSMGEAESAEKVFSKELDLLRINHLN  294 (493)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHH-CCSSHHHHHHHHHTTCTHHHHHHHHHTC----------CHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHhC-CCcHHHHHHHHhhcchhHHHHHHHHHHHhhccchhhhhcccccHHHHHHHHH
Confidence            444556667788999999999999999 87543110    0   010011110                01245666777


Q ss_pred             HHHHhcCHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHcC-CHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHHHHHHHH
Q 017811          242 CLLKLKRYEEAIGQCSLVLGEDENNVKALFRRGKARAELG-QTDAAREDFLKAGKFAPEDKSIARELRLLAEHEKAVYKK  320 (365)
Q Consensus       242 ~~~kl~~~~~A~~~~~~aL~~~p~n~ka~~~~g~a~~~l~-~~~~A~~~l~~al~l~P~n~~~~~~l~~l~~~~~~~~~~  320 (365)
                      ...+.+..+.|...+.+| ...+.....|...|..-..++ +.+.|...|+.+++..|+++.............++ ..+
T Consensus       295 ~~~r~~~~~~AR~i~~~A-~~~~~~~~v~i~~A~lE~~~~~d~~~ar~ife~al~~~~~~~~~~~~yid~e~~~~~-~~~  372 (493)
T 2uy1_A          295 YVLKKRGLELFRKLFIEL-GNEGVGPHVFIYCAFIEYYATGSRATPYNIFSSGLLKHPDSTLLKEEFFLFLLRIGD-EEN  372 (493)
T ss_dssp             HHHHHHCHHHHHHHHHHH-TTSCCCHHHHHHHHHHHHHHHCCSHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTC-HHH
T ss_pred             HHHHcCCHHHHHHHHHHh-hCCCCChHHHHHHHHHHHHHCCChHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCC-HHH
Confidence            777788999999999999 444445667766676666666 69999999999999999988765444433333222 345


Q ss_pred             HHHHHhcc
Q 017811          321 QKEIYKGI  328 (365)
Q Consensus       321 ~k~~y~km  328 (365)
                      .|..|.++
T Consensus       373 aR~l~er~  380 (493)
T 2uy1_A          373 ARALFKRL  380 (493)
T ss_dssp             HHHHHHHS
T ss_pred             HHHHHHHH
Confidence            67778887

>1ya0_A SMG-7 transcript variant 2; alpha-helical repeat, tetratricopetide repeat (TPR), 14-3-3, signaling protein; 2.55A {Homo sapiens} SCOP: a.118.8.1

Probab=95.01  E-value=0.31  Score=47.49  Aligned_cols=79  Identities=6%  Similarity=-0.073  Sum_probs=69.0

Q ss_pred             hhhhHHHHHHHHhcCHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHH
Q 017811          234 PCHLNMAACLLKLKRYEEAIGQCSLVLGEDENNVKALFRRGKARAELGQTDAAREDFLKAGKFAPEDKSIARELRLLAE  312 (365)
Q Consensus       234 ~~~~nla~~~~kl~~~~~A~~~~~~aL~~~p~n~ka~~~~g~a~~~l~~~~~A~~~l~~al~l~P~n~~~~~~l~~l~~  312 (365)
                      .++..||...--...+..|..+|.+|+.+.|++-.+|..+|......|++-+|+.+|.+++......+.+...|..+..
T Consensus       153 r~l~~LGDL~RY~~~~~~A~~~Y~~A~~~~P~~G~~~nqLavla~~~~~~l~a~y~y~rsl~~~~Pf~~a~~nL~~~f~  231 (497)
T 1ya0_A          153 HCLVHLGDIARYRNQTSQAESYYRHAAQLVPSNGQPYNQLAILASSKGDHLTTIFYYCRSIAVKFPFPAASTNLQKALS  231 (497)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTBSHHHHHHHHHHHHTTCHHHHHHHHHHHHSSSBCCHHHHHHHHHHHH
T ss_pred             HHHHHcccHHHHHHHHHHHHHHHHHHHHhCCCCCchHHHHHHHHhcccccHHHHHHHHHHHhcCCCChhHHHHHHHHHH
Confidence            3566677776667788999999999999999999999999999999999999999999999987777888888876643

>2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B

Probab=94.56  E-value=0.44  Score=46.32  Aligned_cols=57  Identities=5%  Similarity=-0.121  Sum_probs=44.4

Q ss_pred             HHHHHHHHHHHHHhhccchhhhhhhhHHHHHHHhhchhhhHHHHHHHHhcCHHHHHHHHHHHHhCCCCCHHHHHH
Q 017811          198 LEEAMQQYEMAIAYMGDDFMFQLFGKYRDMALAVKNPCHLNMAACLLKLKRYEEAIGQCSLVLGEDENNVKALFR  272 (365)
Q Consensus       198 y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~kl~~~~~A~~~~~~aL~~~p~n~ka~~~  272 (365)
                      ..+....|++|+...|...                 .++++.|..+...|+.++|...+.+|+.. |.+...++.
T Consensus       195 ~~Rv~~~ye~al~~~p~~~-----------------~lW~~ya~~~~~~~~~~~ar~i~erAi~~-P~~~~l~~~  251 (493)
T 2uy1_A          195 ESRMHFIHNYILDSFYYAE-----------------EVYFFYSEYLIGIGQKEKAKKVVERGIEM-SDGMFLSLY  251 (493)
T ss_dssp             HHHHHHHHHHHHHHTTTCH-----------------HHHHHHHHHHHHTTCHHHHHHHHHHHHHH-CCSSHHHHH
T ss_pred             HHHHHHHHHHHHHcCCCCH-----------------HHHHHHHHHHHHcCCHHHHHHHHHHHHhC-CCcHHHHHH
Confidence            3455677888888777642                 35888899999999999999999999999 987654443

>3kae_A CDC27, possible protein of nuclear scaffold; tetratricopeptide repeat protein, protein binding; 2.30A {Encephalitozoon cuniculi}

Probab=94.51  E-value=0.39  Score=39.55  Aligned_cols=69  Identities=14%  Similarity=0.100  Sum_probs=56.1

Q ss_pred             hhHHHHHHHHhcCHHHHHHHHHHHHh--C---------------CCCCHHH-HHHHHHHHHHcCCHHHHHHHHHHHHhhC
Q 017811          236 HLNMAACLLKLKRYEEAIGQCSLVLG--E---------------DENNVKA-LFRRGKARAELGQTDAAREDFLKAGKFA  297 (365)
Q Consensus       236 ~~nla~~~~kl~~~~~A~~~~~~aL~--~---------------~p~n~ka-~~~~g~a~~~l~~~~~A~~~l~~al~l~  297 (365)
                      .+--+.||.++++|..|+...+..|+  .               ||.+... +.-+|..+...|+-++|+..|......+
T Consensus        65 ~YYk~LCy~klKdYkkA~~~le~il~~kvd~d~~~d~~~~~ffvd~~DkEfFy~l~a~lltq~g~r~EaI~y~~~Sf~~~  144 (242)
T 3kae_A           65 KYYESLCYKKKKDYKKAIKSLESILEGKVERDPDVDARIQEMFVDPGDEEFFESLLGDLCTLSGYREEGIGHYVRSFGKS  144 (242)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHTTCSBCCCCCCHHHHTTSCCTTCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhcccccCcccccccceeeeccchHHHHHHHHHHHHHHhcCHHHhhhHhhhhcCCc
Confidence            55678999999999999999999982  2               2344444 4468999999999999999999999998


Q ss_pred             CCcHHHH
Q 017811          298 PEDKSIA  304 (365)
Q Consensus       298 P~n~~~~  304 (365)
                      |=-+.+.
T Consensus       145 ~lf~~vE  151 (242)
T 3kae_A          145 FLFSPVE  151 (242)
T ss_dssp             CCHHHHH
T ss_pred             cccchHH
Confidence            8655554

>3txn_A 26S proteasome regulatory complex subunit P42B; PCI domain, alpha solenoid, regulatory PART LID, hydrolase, protein binding; 2.50A {Drosophila melanogaster} PDB: 3txm_A

Probab=94.29  E-value=0.28  Score=46.27  Aligned_cols=99  Identities=12%  Similarity=-0.072  Sum_probs=77.6

Q ss_pred             hhhhhhhhhhhHHHHHHHHHHHHHhhccchhhhhhhhHHHHHHHhhchhhhHHHHHHHHhcCHHHHHHHHHHHHhCC---
Q 017811          187 MDGNALFKEEKLEEAMQQYEMAIAYMGDDFMFQLFGKYRDMALAVKNPCHLNMAACLLKLKRYEEAIGQCSLVLGED---  263 (365)
Q Consensus       187 ~~G~~~~~~~~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~kl~~~~~A~~~~~~aL~~~---  263 (365)
                      ..|..|+..|+|.+|+..+.+.+..+....+           ......+|......|..++++.++...+.++....   
T Consensus       104 kL~~l~~~~~~y~~a~~~i~~l~~~~~~~dd-----------~~~llev~lle~~~~~~~~n~~k~k~~l~~a~~~~~ai  172 (394)
T 3txn_A          104 RLIALYFDTALYTEALALGAQLLRELKKLDD-----------KNLLVEVQLLESKTYHALSNLPKARAALTSARTTANAI  172 (394)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHHHHHHTTSSC-----------THHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHS
T ss_pred             HHHHHHHHhhhHHHHHHHHHHHHHHHhcccc-----------chhHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhhccC
Confidence            5788999999999999999999988765211           12345678899999999999999999999886432   


Q ss_pred             -C-CCH--HHHHHHHHHHH-HcCCHHHHHHHHHHHHhh
Q 017811          264 -E-NNV--KALFRRGKARA-ELGQTDAAREDFLKAGKF  296 (365)
Q Consensus       264 -p-~n~--ka~~~~g~a~~-~l~~~~~A~~~l~~al~l  296 (365)
                       + ...  .....-|.+++ ..++|..|...|-.++.-
T Consensus       173 ~~~p~i~a~i~~~~Gi~~l~~~rdyk~A~~~F~eaf~~  210 (394)
T 3txn_A          173 YCPPKVQGALDLQSGILHAADERDFKTAFSYFYEAFEG  210 (394)
T ss_dssp             CCCHHHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHH
T ss_pred             CCCHHHHHHHHHHhhHHHHHhccCHHHHHHHHHHHHhc
Confidence             1 122  34455788888 899999999999998753

>4b4t_R RPN7, 26S proteasome regulatory subunit RPN7; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=93.60  E-value=0.16  Score=48.62  Aligned_cols=99  Identities=8%  Similarity=-0.126  Sum_probs=77.2

Q ss_pred             hhhhhhhhhhhhhHHHHHHHHHHHHHhhccchhhhhhhhHHHHHHHhhchhhhHHHHHHHHhcCHHHHHHHHHHHHhC--
Q 017811          185 RKMDGNALFKEEKLEEAMQQYEMAIAYMGDDFMFQLFGKYRDMALAVKNPCHLNMAACLLKLKRYEEAIGQCSLVLGE--  262 (365)
Q Consensus       185 ~k~~G~~~~~~~~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~kl~~~~~A~~~~~~aL~~--  262 (365)
                      +...|..+++.|++..|++.|.++.........              ...+++++..+++..++|..+..++.++..+  
T Consensus       134 ~~~la~~~~~~Gd~~~A~~~~~~~~~~~~~~~~--------------kid~~l~~irl~l~~~d~~~~~~~~~ka~~~~~  199 (429)
T 4b4t_R          134 WINLGEYYAQIGDKDNAEKTLGKSLSKAISTGA--------------KIDVMLTIARLGFFYNDQLYVKEKLEAVNSMIE  199 (429)
T ss_dssp             CHHHHHHHHHHCCCTTHHHHHHHHHHHHTCCCS--------------HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHhcCChHH--------------HHHHHHHHHHHHHHhccHHHHHHHHHHHHHhhh
Confidence            457899999999999999999999887654311              2456888889999999999999999998543  


Q ss_pred             -CCC-CH--HHHHHHHHHHHHcCCHHHHHHHHHHHHhhC
Q 017811          263 -DEN-NV--KALFRRGKARAELGQTDAAREDFLKAGKFA  297 (365)
Q Consensus       263 -~p~-n~--ka~~~~g~a~~~l~~~~~A~~~l~~al~l~  297 (365)
                       .++ ..  +.....|.+++..++|..|...|..++.-.
T Consensus       200 ~~~d~~~~~~lk~~~gl~~l~~r~f~~Aa~~f~e~~~t~  238 (429)
T 4b4t_R          200 KGGDWERRNRYKTYYGIHCLAVRNFKEAAKLLVDSLATF  238 (429)
T ss_dssp             TCCCTHHHHHHHHHHHHGGGGTSCHHHHHHHHHHHHHHS
T ss_pred             cCCCHHHHHHHHHHHHHHHHHhChHHHHHHHHHHHhccC
Confidence             222 12  345567788889999999999998876543

>4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae}

Probab=93.44  E-value=0.15  Score=52.17  Aligned_cols=59  Identities=22%  Similarity=0.279  Sum_probs=51.9

Q ss_pred             HhhhhhhhhhhhhhHHHHHHHHHHHHHhhccchhhhhhhhHHHHHHHhhchhhhHHHHHHHHhcCHHHHHHHHHHH
Q 017811          184 RRKMDGNALFKEEKLEEAMQQYEMAIAYMGDDFMFQLFGKYRDMALAVKNPCHLNMAACLLKLKRYEEAIGQCSLV  259 (365)
Q Consensus       184 ~~k~~G~~~~~~~~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~kl~~~~~A~~~~~~a  259 (365)
                      -+..++..+..+|+|+.|+.+-++|+.+.|....                 +++.||.||.++|+|+.|+-..+.+
T Consensus       339 LL~~Qa~FLl~K~~~elAL~~Ak~AV~~aPseF~-----------------tW~~La~vYi~l~d~e~ALLtLNSc  397 (754)
T 4gns_B          339 LLNIQTNFLLNRGDYELALGVSNTSTELALDSFE-----------------SWYNLARCHIKKEEYEKALFAINSM  397 (754)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSCHH-----------------HHHHHHHHHHHTTCHHHHHHHHHHS
T ss_pred             HHHHHHHHHhccCcHHHHHHHHHHHHhcCchhhH-----------------HHHHHHHHHHHhccHHHHHHHHhcC
Confidence            4566788888999999999999999999998754                 3999999999999999999877654

>1zbp_A Hypothetical protein VPA1032; alpha-beta protein, structural genomics, PSI, protein struct initiative; 2.40A {Vibrio parahaemolyticus} SCOP: e.61.1.1

Probab=92.85  E-value=0.83  Score=40.47  Aligned_cols=63  Identities=16%  Similarity=0.018  Sum_probs=54.5

Q ss_pred             hhhhhhhhhHHHHHHHHHHHHHhhccchhhhhhhhHHHHHHHhhchhhhHHHHHHHHhcCHHHHHHHHHHHHhCCCCCHH
Q 017811          189 GNALFKEEKLEEAMQQYEMAIAYMGDDFMFQLFGKYRDMALAVKNPCHLNMAACLLKLKRYEEAIGQCSLVLGEDENNVK  268 (365)
Q Consensus       189 G~~~~~~~~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~kl~~~~~A~~~~~~aL~~~p~n~k  268 (365)
                      ...+++.+...+|+......|+-.|.|..                 +...+...+.-.|+|+.|..-++.+.+++|....
T Consensus         4 ~~~ll~~g~L~~al~~~~~~VR~~P~da~-----------------~R~~LfqLLcv~G~w~RA~~QL~~~a~l~p~~~~   66 (273)
T 1zbp_A            4 WKNALSEGQLQQALELLIEAIKASPKDAS-----------------LRSSFIELLCIDGDFERADEQLMQSIKLFPEYLP   66 (273)
T ss_dssp             HHHHTTTTCHHHHHHHHHHHHHTCTTCHH-----------------HHHHHHHHHHHHTCHHHHHHHHHHHHHHCGGGHH
T ss_pred             HHHHHhCCCHHHHHHHHHHHHHhCCcCHH-----------------HHHHHHHHHHhcCCHHHHHHHHHHHHHhCchhhH
Confidence            35678999999999999999999999854                 3666777788899999999999999999998765

>2v6y_A AAA family ATPase, P60 katanin; MIT, VPS4, archaea, AAA-ATPase, ATP-binding, microtubule INT and trafficking domain, nucleotide-binding; HET: SRT; 2.40A {Sulfolobus solfataricus} PDB: 2v6y_B*

Probab=91.95  E-value=0.28  Score=35.34  Aligned_cols=42  Identities=24%  Similarity=0.248  Sum_probs=35.5

Q ss_pred             CCHHH-HHHHHHHhhhhhhhhhhhhhHHHHHHHHHHHHHhhcc
Q 017811          173 MTVEE-RIGAADRRKMDGNALFKEEKLEEAMQQYEMAIAYMGD  214 (365)
Q Consensus       173 ~~~~e-~~~~a~~~k~~G~~~~~~~~y~~A~~~y~~al~~~~~  214 (365)
                      |+... .++.|..+..+|...-+.|+|.+|+.+|..||+.+-.
T Consensus         1 M~~~~~~~~~Ai~lv~~Ave~D~~g~y~eAl~lY~~aie~l~~   43 (83)
T 2v6y_A            1 MSAQVMLEDMARKYAILAVKADKEGKVEDAITYYKKAIEVLSQ   43 (83)
T ss_dssp             CCHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred             CCchHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHH
Confidence            34444 6788889999999999999999999999999988743

>4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A

Probab=90.89  E-value=2.9  Score=40.58  Aligned_cols=99  Identities=7%  Similarity=-0.069  Sum_probs=76.9

Q ss_pred             hhhhhhhhhhhhhHHHHHHHHHHHHHhh--ccchhhhhhhhHHHHHHHhhchhhhHHHHHHHHhcCHHHHHHHHHHHHhC
Q 017811          185 RKMDGNALFKEEKLEEAMQQYEMAIAYM--GDDFMFQLFGKYRDMALAVKNPCHLNMAACLLKLKRYEEAIGQCSLVLGE  262 (365)
Q Consensus       185 ~k~~G~~~~~~~~y~~A~~~y~~al~~~--~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~kl~~~~~A~~~~~~aL~~  262 (365)
                      +...-+.+.+.|++++|...|.+....-  |+                  ...|..+-.+|.+.|++++|...+....+.
T Consensus       108 yn~lI~~~~~~g~~~~A~~l~~~M~~~g~~Pd------------------~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~  169 (501)
T 4g26_A          108 FTNGARLAVAKDDPEMAFDMVKQMKAFGIQPR------------------LRSYGPALFGFCRKGDADKAYEVDAHMVES  169 (501)
T ss_dssp             HHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCC------------------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCc------------------cceehHHHHHHHHCCCHHHHHHHHHHHHhc
Confidence            4445567889999999999998876542  22                  123777888899999999999999987754


Q ss_pred             C-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh--hCCCcH
Q 017811          263 D-ENNVKALFRRGKARAELGQTDAAREDFLKAGK--FAPEDK  301 (365)
Q Consensus       263 ~-p~n~ka~~~~g~a~~~l~~~~~A~~~l~~al~--l~P~n~  301 (365)
                      . ..+...|..+-.+|...|++++|...|++..+  ..|+..
T Consensus       170 G~~Pd~~ty~~Li~~~~~~g~~d~A~~ll~~Mr~~g~~ps~~  211 (501)
T 4g26_A          170 EVVPEEPELAALLKVSMDTKNADKVYKTLQRLRDLVRQVSKS  211 (501)
T ss_dssp             TCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSSBCHH
T ss_pred             CCCCCHHHHHHHHHHHhhCCCHHHHHHHHHHHHHhCCCcCHH
Confidence            2 23778899999999999999999999998765  456543

>4b4t_P 26S proteasome regulatory subunit RPN5; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=90.86  E-value=3.1  Score=39.71  Aligned_cols=105  Identities=11%  Similarity=-0.073  Sum_probs=76.5

Q ss_pred             HHHHhhhhhhhhhhhhhHHHHHHHHHHHHHhhccchhhhhhhhHHHHHHHhhchhhhHHHHHHHHhcCHHHHHHHHHHHH
Q 017811          181 AADRRKMDGNALFKEEKLEEAMQQYEMAIAYMGDDFMFQLFGKYRDMALAVKNPCHLNMAACLLKLKRYEEAIGQCSLVL  260 (365)
Q Consensus       181 ~a~~~k~~G~~~~~~~~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~kl~~~~~A~~~~~~aL  260 (365)
                      .+.-....+..++..|+|.+|.........-.-....           ...+..+++-....|+..++|.+|...++++.
T Consensus       136 rarl~~~La~i~e~~g~~~eA~~iL~~l~~Et~~~~~-----------~~~kve~~l~q~rl~l~~~d~~~a~~~~~ki~  204 (445)
T 4b4t_P          136 RARVTKDLVEIKKEEGKIDEAADILCELQVETYGSME-----------MSEKIQFILEQMELSILKGDYSQATVLSRKIL  204 (445)
T ss_dssp             HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCSSSC-----------HHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhccc-----------HHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence            4555667889999999999999998887543221110           12234557788889999999999999999864


Q ss_pred             h---CCCCC--H--HHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Q 017811          261 G---EDENN--V--KALFRRGKARAELGQTDAAREDFLKAGKF  296 (365)
Q Consensus       261 ~---~~p~n--~--ka~~~~g~a~~~l~~~~~A~~~l~~al~l  296 (365)
                      .   -.+.+  .  ..+...|..+.+.++|.+|..+|..++..
T Consensus       205 ~~~~~~~~~~~lk~~~~~~~~~~~~~e~~y~~a~~~y~e~~~~  247 (445)
T 4b4t_P          205 KKTFKNPKYESLKLEYYNLLVKISLHKREYLEVAQYLQEIYQT  247 (445)
T ss_dssp             HHHHHSSCCHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHH
T ss_pred             HhhcccCCcHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhc
Confidence            2   22223  2  35567888999999999999999888753

>2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A*

Probab=90.26  E-value=1.7  Score=40.64  Aligned_cols=80  Identities=16%  Similarity=0.047  Sum_probs=61.0

Q ss_pred             HHHHHHHHhcCHHHHHHHHHHHHhCCCC--------C--------------HHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 017811          238 NMAACLLKLKRYEEAIGQCSLVLGEDEN--------N--------------VKALFRRGKARAELGQTDAAREDFLKAGK  295 (365)
Q Consensus       238 nla~~~~kl~~~~~A~~~~~~aL~~~p~--------n--------------~ka~~~~g~a~~~l~~~~~A~~~l~~al~  295 (365)
                      ..|......+++..|+..+..||.+...        .              ..++..++.++..+|++.+|+..+..++.
T Consensus       120 ~~~~~~~~~~~~~~a~~~l~~Al~L~rG~~L~~~~~~~w~~~~r~~l~~~~~~a~~~~~~~~l~~g~~~~a~~~l~~~~~  199 (388)
T 2ff4_A          120 TAGVHAAAAGRFEQASRHLSAALREWRGPVLDDLRDFQFVEPFATALVEDKVLAHTAKAEAEIACGRASAVIAELEALTF  199 (388)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHHHTTCCSSTTGGGTTSTTHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHhCCCHHHHHHHHHHHHHhcCCCCCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence            3344444568999999999999977421        1              13666788899999999999999999999


Q ss_pred             hCCCcHHHHHHHHHHHHHHHHH
Q 017811          296 FAPEDKSIARELRLLAEHEKAV  317 (365)
Q Consensus       296 l~P~n~~~~~~l~~l~~~~~~~  317 (365)
                      .+|-+..++..+..+..+.+..
T Consensus       200 ~~P~~E~~~~~lm~al~~~Gr~  221 (388)
T 2ff4_A          200 EHPYREPLWTQLITAYYLSDRQ  221 (388)
T ss_dssp             HSTTCHHHHHHHHHHHHTTTCH
T ss_pred             hCCCCHHHHHHHHHHHHHcCCH
Confidence            9999988888877765544333

>2cpt_A SKD1 protein, vacuolar sorting protein 4B; MIT, helix bundle, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.7.14.1

Probab=89.92  E-value=0.74  Score=35.40  Aligned_cols=43  Identities=23%  Similarity=0.227  Sum_probs=35.7

Q ss_pred             CCCHH-HHHHHHHHhhhhhhhhhhhhhHHHHHHHHHHHHHhhcc
Q 017811          172 DMTVE-ERIGAADRRKMDGNALFKEEKLEEAMQQYEMAIAYMGD  214 (365)
Q Consensus       172 ~~~~~-e~~~~a~~~k~~G~~~~~~~~y~~A~~~y~~al~~~~~  214 (365)
                      .|+.. ..++.|..+..+|...-..++|.+|+.+|..|++++-.
T Consensus         7 ~m~~~~~~l~kAi~lv~~Ave~D~ag~y~eAl~lY~~Aie~l~~   50 (117)
T 2cpt_A            7 GMSSTSPNLQKAIDLASKAAQEDKAGNYEEALQLYQHAVQYFLH   50 (117)
T ss_dssp             CSCCCCHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHH
T ss_pred             cCCccHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHH
Confidence            44444 56778889999999999999999999999999998643

>4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A

Probab=89.89  E-value=5.9  Score=38.38  Aligned_cols=115  Identities=14%  Similarity=0.065  Sum_probs=81.5

Q ss_pred             hhhhHHHHHHHHHHHHHhh--ccchhhhhhhhHHHHHHHhhchhhhHHHHHHHHhcCHHHHHHHHHHHHhCC-CCCHHHH
Q 017811          194 KEEKLEEAMQQYEMAIAYM--GDDFMFQLFGKYRDMALAVKNPCHLNMAACLLKLKRYEEAIGQCSLVLGED-ENNVKAL  270 (365)
Q Consensus       194 ~~~~y~~A~~~y~~al~~~--~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~kl~~~~~A~~~~~~aL~~~-p~n~ka~  270 (365)
                      +.+.+.+|...|.+....-  |+                  ...|..+-.+|.+.|++++|...++...... ..+...|
T Consensus        82 ~~~~l~~A~~lf~~M~~~G~~Pd------------------~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~ty  143 (501)
T 4g26_A           82 PNPGLSRGFDIFKQMIVDKVVPN------------------EATFTNGARLAVAKDDPEMAFDMVKQMKAFGIQPRLRSY  143 (501)
T ss_dssp             CCHHHHHHHHHHHHHHHTTCCCC------------------HHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHH
T ss_pred             hcchHHHHHHHHHHHHHhCCCCC------------------HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCcccee
Confidence            4456777888777655432  22                  2248888899999999999999999877642 2388899


Q ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHh--hCCCcHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Q 017811          271 FRRGKARAELGQTDAAREDFLKAGK--FAPEDKSIARELRLLAEHEKAVYKKQKEIYKGI  328 (365)
Q Consensus       271 ~~~g~a~~~l~~~~~A~~~l~~al~--l~P~n~~~~~~l~~l~~~~~~~~~~~k~~y~km  328 (365)
                      ..+-.+|...|++++|...|....+  +.|+.......+..+ .+.++.. +...++.+|
T Consensus       144 n~lI~~~~~~g~~~~A~~l~~~M~~~G~~Pd~~ty~~Li~~~-~~~g~~d-~A~~ll~~M  201 (501)
T 4g26_A          144 GPALFGFCRKGDADKAYEVDAHMVESEVVPEEPELAALLKVS-MDTKNAD-KVYKTLQRL  201 (501)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHH-HHTTCHH-HHHHHHHHH
T ss_pred             hHHHHHHHHCCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHH-hhCCCHH-HHHHHHHHH
Confidence            9999999999999999999998876  456654444444433 3333333 344556666

>3mv2_A Coatomer subunit alpha; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_A

Probab=88.51  E-value=5.3  Score=36.24  Aligned_cols=119  Identities=12%  Similarity=-0.050  Sum_probs=70.6

Q ss_pred             HhhhhhhhhhhhhhHHHHHHHHHHHHHhhccchhhhhhhhHHHHHHHhhchhhhHHHHHHHHhcC-------HHHHHH--
Q 017811          184 RRKMDGNALFKEEKLEEAMQQYEMAIAYMGDDFMFQLFGKYRDMALAVKNPCHLNMAACLLKLKR-------YEEAIG--  254 (365)
Q Consensus       184 ~~k~~G~~~~~~~~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~kl~~-------~~~A~~--  254 (365)
                      .....|-.++..|+|.+|+..|+.+|...+-....  ..++.+++.++...|.-.+-.+-+.+.+       ....++  
T Consensus       116 ~~Lk~gyk~~t~gKf~eAl~~Fr~iL~~i~l~~v~--~~~e~~e~~eli~icrEYilal~iEl~Rr~l~~~~~kR~lELA  193 (325)
T 3mv2_A          116 EKMNEGYKNFKLNKPDIAIECFREAIYRITLLMVD--DAEDEKLAHKILETAREYILGLSIELERRSLKEGNTVRMLELA  193 (325)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTCCBC--SSHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCTTCHHHHHHHH
T ss_pred             HHHHHHHHHHhcCCHHHHHHHHHHHHHHhheeeec--cHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccHHHHHHHH
Confidence            34568999999999999999999999887642111  1222333444444433322222223211       111111  


Q ss_pred             HHHHHHhCCCCCHH-HHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCcHHHH
Q 017811          255 QCSLVLGEDENNVK-ALFRRGKARAELGQTDAAREDFLKAGKFAPEDKSIA  304 (365)
Q Consensus       255 ~~~~aL~~~p~n~k-a~~~~g~a~~~l~~~~~A~~~l~~al~l~P~n~~~~  304 (365)
                      .|=.-..+.|.+-- ++..--...++.++|.-|...-++.|++.|..+.+.
T Consensus       194 AYFT~c~LQp~H~~LaLr~AM~~a~K~KNy~tAa~fArrLLel~p~~~~a~  244 (325)
T 3mv2_A          194 AYFTKAKLSPIHRTNALQVAMSQHFKHKNFLQASYFAGEFLKIISSGPRAE  244 (325)
T ss_dssp             HHGGGSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCSSHHHH
T ss_pred             HHhccCCCcHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCCHHHHH
Confidence            11122344554433 444444577889999999999999999999754443

>2w2u_A Hypothetical P60 katanin; hydrolase transport complex, nucleotide-binding, ESCRT, AAA-ATPase, cytokinesis, ATP-binding; 2.20A {Sulfolobus acidocaldarius}

Probab=88.21  E-value=0.61  Score=33.50  Aligned_cols=42  Identities=24%  Similarity=0.245  Sum_probs=35.8

Q ss_pred             CCH-HHHHHHHHHhhhhhhhhhhhhhHHHHHHHHHHHHHhhcc
Q 017811          173 MTV-EERIGAADRRKMDGNALFKEEKLEEAMQQYEMAIAYMGD  214 (365)
Q Consensus       173 ~~~-~e~~~~a~~~k~~G~~~~~~~~y~~A~~~y~~al~~~~~  214 (365)
                      |++ ...++.|..+..+|..+-+.|+|.+|+.+|..||+.+-.
T Consensus         9 ~~~~~~~~~~Ai~lv~~Ave~D~~g~y~eAl~lY~~aie~l~~   51 (83)
T 2w2u_A            9 MSAQVMLEEMARKYAINAVKADKEGNAEEAITNYKKAIEVLAQ   51 (83)
T ss_dssp             CCHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred             CCCchHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHH
Confidence            444 356788999999999999999999999999999988743

>2v6x_A Vacuolar protein sorting-associated protein 4; protein transport, vacuole, endosome, transport, ESCRT-III, VPS2, VPS4, SKD1, VPS4B, VPS4A; 1.98A {Saccharomyces cerevisiae}

Probab=87.27  E-value=0.75  Score=33.09  Aligned_cols=38  Identities=16%  Similarity=0.091  Sum_probs=32.4

Q ss_pred             HHHHHHHHhhhhhhhhhhhhhHHHHHHHHHHHHHhhcc
Q 017811          177 ERIGAADRRKMDGNALFKEEKLEEAMQQYEMAIAYMGD  214 (365)
Q Consensus       177 e~~~~a~~~k~~G~~~~~~~~y~~A~~~y~~al~~~~~  214 (365)
                      ..++.|..+..+|...-..|+|.+|+.+|..|++++-.
T Consensus         8 ~~l~~A~~l~~~Av~~D~~g~y~eAl~~Y~~aie~l~~   45 (85)
T 2v6x_A            8 DFLTKGIELVQKAIDLDTATQYEEAYTAYYNGLDYLML   45 (85)
T ss_dssp             CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHH
Confidence            35667888888999999999999999999999997643

>3mkr_B Coatomer subunit alpha; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}

Probab=87.06  E-value=8.3  Score=34.91  Aligned_cols=115  Identities=12%  Similarity=0.037  Sum_probs=70.8

Q ss_pred             hhhhhhhhhhhhhHHHHHHHHHHHHHhhccchhhhhhhhHHHHHHHhhchhhhHHHHHHHHhc--C-----HHHHHHHHH
Q 017811          185 RKMDGNALFKEEKLEEAMQQYEMAIAYMGDDFMFQLFGKYRDMALAVKNPCHLNMAACLLKLK--R-----YEEAIGQCS  257 (365)
Q Consensus       185 ~k~~G~~~~~~~~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~kl~--~-----~~~A~~~~~  257 (365)
                      ....|-.++..|+|.+|+..|+.+|...+-....  ..++.+++.++...|.-.+-.+-+.+.  +     .+.....++
T Consensus       105 ~Lk~gyk~~t~gKf~eAl~~Fr~iL~~i~l~~v~--~~~e~~e~~eli~icreYilal~iEl~Rr~l~~~~~~~~kR~lE  182 (320)
T 3mkr_B          105 RLQLCYQLTTVGKFEEAVEKFRSILLSVPLLVVD--NKQEIAEAQQLITICREYIVGLSMETERKKLPKETLEQQKRICE  182 (320)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHHGGGCCCC--SHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCCCSHHHHHHHHH
T ss_pred             HHHHHHHHHhcCCHHHHHHHHHHHHHHhhheeec--cHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCchhHHHHHH
Confidence            4578999999999999999999999988642211  122233444444444333332333331  1     122222222


Q ss_pred             HH-----HhCCCCCHH-HHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCcH
Q 017811          258 LV-----LGEDENNVK-ALFRRGKARAELGQTDAAREDFLKAGKFAPEDK  301 (365)
Q Consensus       258 ~a-----L~~~p~n~k-a~~~~g~a~~~l~~~~~A~~~l~~al~l~P~n~  301 (365)
                      .+     ..+.|.+-- ++..--...++.++|.-|...-++.|++.|+..
T Consensus       183 LAAYFT~c~Lqp~H~~LaLr~AM~~a~K~KNy~tAa~fArrLLel~p~~~  232 (320)
T 3mkr_B          183 MAAYFTHSNLQPVHMILVLRTALNLFFKLKNFRTAAAFARRLLELGPKPE  232 (320)
T ss_dssp             HHHHHTTSCCCHHHHHHHHHHHHHHHHHTTBHHHHHHHHHHHHHTCCCHH
T ss_pred             HHHHhccCCCcHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCCHH
Confidence            22     345565543 444444577889999999999999999998743

>1ya0_A SMG-7 transcript variant 2; alpha-helical repeat, tetratricopetide repeat (TPR), 14-3-3, signaling protein; 2.55A {Homo sapiens} SCOP: a.118.8.1

Probab=86.30  E-value=3.9  Score=39.71  Aligned_cols=80  Identities=11%  Similarity=-0.128  Sum_probs=67.5

Q ss_pred             HHhhhhhhhhhhhhhHHHHHHHHHHHHHhhccchhhhhhhhHHHHHHHhhchhhhHHHHHHHHhcCHHHHHHHHHHHHhC
Q 017811          183 DRRKMDGNALFKEEKLEEAMQQYEMAIAYMGDDFMFQLFGKYRDMALAVKNPCHLNMAACLLKLKRYEEAIGQCSLVLGE  262 (365)
Q Consensus       183 ~~~k~~G~~~~~~~~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~kl~~~~~A~~~~~~aL~~  262 (365)
                      ..+...|...--...+..|...|.+|+.+.|.+.                 ..|+.||.+....+++-.|+-+|.++|..
T Consensus       153 r~l~~LGDL~RY~~~~~~A~~~Y~~A~~~~P~~G-----------------~~~nqLavla~~~~~~l~a~y~y~rsl~~  215 (497)
T 1ya0_A          153 HCLVHLGDIARYRNQTSQAESYYRHAAQLVPSNG-----------------QPYNQLAILASSKGDHLTTIFYYCRSIAV  215 (497)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTBS-----------------HHHHHHHHHHHHTTCHHHHHHHHHHHHSS
T ss_pred             HHHHHcccHHHHHHHHHHHHHHHHHHHHhCCCCC-----------------chHHHHHHHHhcccccHHHHHHHHHHHhc
Confidence            3556688887777889999999999999999863                 34999999999999999999999999988


Q ss_pred             CCCCHHHHHHHHHHHHH
Q 017811          263 DENNVKALFRRGKARAE  279 (365)
Q Consensus       263 ~p~n~ka~~~~g~a~~~  279 (365)
                      ....+.|.-++...+..
T Consensus       216 ~~Pf~~a~~nL~~~f~~  232 (497)
T 1ya0_A          216 KFPFPAASTNLQKALSK  232 (497)
T ss_dssp             SBCCHHHHHHHHHHHHH
T ss_pred             CCCChhHHHHHHHHHHH
Confidence            77788887777777654

>1wfd_A Hypothetical protein 1500032H18; MIT domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Mus musculus} SCOP: a.7.14.1

Probab=86.12  E-value=2.4  Score=31.06  Aligned_cols=37  Identities=19%  Similarity=0.108  Sum_probs=32.4

Q ss_pred             HHHHHHHhhhhhhhhhhhhhHHHHHHHHHHHHHhhcc
Q 017811          178 RIGAADRRKMDGNALFKEEKLEEAMQQYEMAIAYMGD  214 (365)
Q Consensus       178 ~~~~a~~~k~~G~~~~~~~~y~~A~~~y~~al~~~~~  214 (365)
                      .++.|..+..+|..+-+.++|.+|+.+|..|++++-.
T Consensus        11 ~l~~Ai~lv~~Ave~D~~g~y~eAl~~Y~~Aie~l~~   47 (93)
T 1wfd_A           11 DSTAAVAVLKRAVELDAESRYQQALVCYQEGIDMLLQ   47 (93)
T ss_dssp             HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHH
Confidence            5667888899999999999999999999999988743

>4b4t_S RPN3, 26S proteasome regulatory subunit RPN3; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=85.45  E-value=1.3  Score=42.98  Aligned_cols=68  Identities=16%  Similarity=0.017  Sum_probs=55.7

Q ss_pred             chhhhHHHHHHHHhcCHHHHHHHHHHHHhCCC--CC---HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCc
Q 017811          233 NPCHLNMAACLLKLKRYEEAIGQCSLVLGEDE--NN---VKALFRRGKARAELGQTDAAREDFLKAGKFAPED  300 (365)
Q Consensus       233 ~~~~~nla~~~~kl~~~~~A~~~~~~aL~~~p--~n---~ka~~~~g~a~~~l~~~~~A~~~l~~al~l~P~n  300 (365)
                      ..+++-+-..|+..+.|+.|.....++.--..  .|   +..+|..|+++...++|.+|..+|..|+...|.+
T Consensus       231 a~l~nllLRnYL~~~~y~qA~~lvsk~~fP~~~~sn~q~~rY~YY~GRI~a~q~~Y~eA~~~L~~A~rkap~~  303 (523)
T 4b4t_S          231 AMLINLILRDFLNNGEVDSASDFISKLEYPHTDVSSSLEARYFFYLSKINAIQLDYSTANEYIIAAIRKAPHN  303 (523)
T ss_dssp             HHHHHHHHHHHHHSSCSTTHHHHHHHHCSCTTTSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTSSCSCS
T ss_pred             HHHHHHHHHHHHccCcHHHHHHHHhcCcCCcccCCHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCcc
Confidence            34566778899999999999999999853221  12   4567889999999999999999999999998865

>3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae}

Probab=85.17  E-value=2.4  Score=35.06  Aligned_cols=27  Identities=7%  Similarity=-0.099  Sum_probs=22.0

Q ss_pred             HHHhhhhhhhhhhhhhHHHHHHHHHHH
Q 017811          182 ADRRKMDGNALFKEEKLEEAMQQYEMA  208 (365)
Q Consensus       182 a~~~k~~G~~~~~~~~y~~A~~~y~~a  208 (365)
                      -..|+..|...+..|++.-|.++|.++
T Consensus        34 ~~~Wk~Lg~~AL~~gn~~lAe~cy~~~   60 (177)
T 3mkq_B           34 SITWERLIQEALAQGNASLAEMIYQTQ   60 (177)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHHHcCChHHHHHHHHHh
Confidence            446888888888888888888888875

>2dl1_A Spartin; SPG20, MIT, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=83.04  E-value=3.5  Score=31.35  Aligned_cols=78  Identities=15%  Similarity=0.055  Sum_probs=56.9

Q ss_pred             HHHHHHHHHhhhhhhhhhhhhhHHHHHHHHHHHHHhhccchhhh-----hhhhHHHHHHHhhchhhhHHHHHHHHhcCHH
Q 017811          176 EERIGAADRRKMDGNALFKEEKLEEAMQQYEMAIAYMGDDFMFQ-----LFGKYRDMALAVKNPCHLNMAACLLKLKRYE  250 (365)
Q Consensus       176 ~e~~~~a~~~k~~G~~~~~~~~y~~A~~~y~~al~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~nla~~~~kl~~~~  250 (365)
                      ......|-.+...|-..=..|+-+.|+.+|+++|..+.......     -.++.++....+..+...||..+.-+++...
T Consensus        16 k~~h~~AF~~Is~AL~~DE~g~k~~Al~lYk~GI~eLe~Gl~I~~~~~~~~g~~we~Ar~lq~KM~~nL~~v~~RL~~Le   95 (116)
T 2dl1_A           16 REAYKKAFLFVNKGLNTDELGQKEEAKNYYKQGIGHLLRGISISSKESEHTGPGWESARQMQQKMKETLQNVRTRLEILE   95 (116)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHSSCCCCTTCCCSHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHhhhhhcCCHHHHHHHHHHHHHHHHHhccccccCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            34566777777788777778888899999999888775422211     2356677788888888999999998887665


Q ss_pred             HHH
Q 017811          251 EAI  253 (365)
Q Consensus       251 ~A~  253 (365)
                      ...
T Consensus        96 ~~~   98 (116)
T 2dl1_A           96 KGL   98 (116)
T ss_dssp             HHH
T ss_pred             hcC
Confidence            543

>4a5x_A MITD1, MIT domain-containing protein 1; protein transport, ESCRT, cytokinesis, midbody; HET: P15; 1.91A {Homo sapiens}

Probab=83.01  E-value=2.4  Score=30.56  Aligned_cols=34  Identities=21%  Similarity=0.143  Sum_probs=28.9

Q ss_pred             HHHHHhhhhhhhhhhhhhHHHHHHHHHHHHHhhc
Q 017811          180 GAADRRKMDGNALFKEEKLEEAMQQYEMAIAYMG  213 (365)
Q Consensus       180 ~~a~~~k~~G~~~~~~~~y~~A~~~y~~al~~~~  213 (365)
                      ..|..+..+|..+-..|+|.+|+.+|..||+++-
T Consensus        14 ~~A~~lv~~Ave~D~~g~y~eAl~lY~~Aie~ll   47 (86)
T 4a5x_A           14 TAAATVLKRAVELDSESRYPQALVCYQEGIDLLL   47 (86)
T ss_dssp             HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH
Confidence            4566777888888999999999999999998864

>2crb_A Nuclear receptor binding factor 2; NRBF-2, MIT domain, helix bundle, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.7.16.1

Probab=81.32  E-value=2  Score=31.20  Aligned_cols=37  Identities=22%  Similarity=0.343  Sum_probs=32.5

Q ss_pred             HHHHHHHhhhhhhhhhhhhhHHHHHHHHHHHHHhhcc
Q 017811          178 RIGAADRRKMDGNALFKEEKLEEAMQQYEMAIAYMGD  214 (365)
Q Consensus       178 ~~~~a~~~k~~G~~~~~~~~y~~A~~~y~~al~~~~~  214 (365)
                      -++.|..+-.++..+.+.|+|++||.+..+|..++..
T Consensus        11 pLn~AH~~~RrAe~ll~~gkydeAIech~kAa~yL~e   47 (97)
T 2crb_A           11 PLNLAHQQSRRADRLLAAGKYEEAISCHRKATTYLSE   47 (97)
T ss_dssp             HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred             hhhhhhHhhhHHHHHHhcCCHHHHHHHHHHHHHHHHH
Confidence            4567888899999999999999999999999987654

>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A

Probab=81.19  E-value=4.5  Score=40.92  Aligned_cols=52  Identities=17%  Similarity=0.101  Sum_probs=29.5

Q ss_pred             hhHHHHHHHHhcCHHHHHHHHHHHH--------hCCCCCHHHHHHHHHHHHHcCCHHHHH
Q 017811          236 HLNMAACLLKLKRYEEAIGQCSLVL--------GEDENNVKALFRRGKARAELGQTDAAR  287 (365)
Q Consensus       236 ~~nla~~~~kl~~~~~A~~~~~~aL--------~~~p~n~ka~~~~g~a~~~l~~~~~A~  287 (365)
                      +.++|..+++.++++.|+.+|.++=        ..-..+.+.+-+++......|+++.|.
T Consensus       684 W~~la~~al~~~~~~~A~~~y~~~~d~~~l~~l~~~~~~~~~~~~~~~~a~~~~~~~~A~  743 (814)
T 3mkq_A          684 WRALGDASLQRFNFKLAIEAFTNAHDLESLFLLHSSFNNKEGLVTLAKDAETTGKFNLAF  743 (814)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHTCHHHHHHHHHHTTCHHHHHHHHHHHHHTTCHHHHH
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHccChhhhHHHHHHcCCHHHHHHHHHHHHHcCchHHHH
Confidence            6677777777777777777777641        112345555555544444444444443

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	365
d1kt1a1	168	a.118.8.1 (A:254-421) FKBP51, C-terminal domain {M	4e-18
d1p5qa1	170	a.118.8.1 (A:258-427) FKBP52 (FKBP4), C-terminal d	3e-15
d2fbna1	153	a.118.8.1 (A:22-174) Putative 70 kda peptidylproly	2e-13
d1ihga1	169	a.118.8.1 (A:197-365) Cyclophilin 40 {Cow (Bos tau	1e-12
d1pbka_	116	d.26.1.1 (A:) FKBP25 {Human (Homo sapiens) [TaxId:	2e-12
d1u79a_	125	d.26.1.1 (A:) FKBP13 {Thale cress (Arabidopsis tha	1e-11
d1q1ca2	117	d.26.1.1 (A:141-257) FKBP52, N-terminal domains {H	2e-11
d1r9ha_	118	d.26.1.1 (A:) FKB-6, N-terminal domain {Caenorhabd	3e-11
d1q6ha_	210	d.26.1.1 (A:) Peptidyl-prolyl cis-trans isomerase	2e-10
d1kt1a3	115	d.26.1.1 (A:139-253) FKBP51, N-terminal domains {M	2e-10
d1yata_	113	d.26.1.1 (A:) Calcineurin (FKBP12.6) {Baker's yeas	6e-10
d1q1ca1	120	d.26.1.1 (A:21-140) FKBP52, N-terminal domains {Hu	1e-09
d2ppna1	107	d.26.1.1 (A:1-107) FK-506 binding protein (FKBP12)	4e-09
d1w3ba_	388	a.118.8.1 (A:) O-GlcNAc transferase p110 subunit,	1e-08
d1w3ba_	388	a.118.8.1 (A:) O-GlcNAc transferase p110 subunit,	1e-06
d1w3ba_	388	a.118.8.1 (A:) O-GlcNAc transferase p110 subunit,	2e-06
d1w3ba_	388	a.118.8.1 (A:) O-GlcNAc transferase p110 subunit,	3e-06
d1w3ba_	388	a.118.8.1 (A:) O-GlcNAc transferase p110 subunit,	1e-05
d1w3ba_	388	a.118.8.1 (A:) O-GlcNAc transferase p110 subunit,	2e-05
d1kt1a2	111	d.26.1.1 (A:28-138) FKBP51, N-terminal domains {Mo	2e-08
d2c2la1	201	a.118.8.1 (A:24-224) STIP1 homology and U box-cont	2e-07
d1fd9a_	204	d.26.1.1 (A:) Macrophage infectivity potentiator p	2e-07
d1hh8a_	192	a.118.8.1 (A:) Neutrophil cytosolic factor 2 (NCF-	1e-06
d2hr2a1	156	a.118.8.8 (A:2-157) Hypothetical protein CT2138 {C	1e-05
d1a17a_	159	a.118.8.1 (A:) Protein phosphatase 5 {Human (Homo	2e-05
d1zbpa1	264	e.61.1.1 (A:2-265) Hypothetical protein VPA1032 {V	8e-05
d1zbpa1	264	e.61.1.1 (A:2-265) Hypothetical protein VPA1032 {V	2e-04
d1ya0a1	497	a.118.8.1 (A:1-497) SMG-7 {Human (Homo sapiens) [T	8e-05
d1elra_	128	a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9	1e-04
d1xnfa_	259	a.118.8.1 (A:) Lipoprotein NlpI {Escherichia coli	2e-04
d1elwa_	117	a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9	3e-04
d1fcha_	323	a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting	5e-04
d1nzna_	122	a.118.8.1 (A:) Mitochondria fission protein Fis1 {	0.004
d1hz4a_	366	a.118.8.2 (A:) Transcription factor MalT domain II	0.004

>d1kt1a1 a.118.8.1 (A:254-421) FKBP51, C-terminal domain {Monkey (Saimiri boliviensis) [TaxId: 27679]} Length = 168

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: FKBP51, C-terminal domain
species: Monkey (Saimiri boliviensis) [TaxId: 27679]

 Score = 78.8 bits (193), Expect = 4e-18
 Identities = 42/158 (26%), Positives = 80/158 (50%), Gaps = 2/158 (1%)

Query: 172 DMTVEERIGAADRRKMDGNALFKEEKLEEAMQQYEMAIAYMGDDFMFQLFGKYRDMALAV 231
           +M  +E++  A   K  G   FK  K  +A+ QY   ++++  ++   L  K    + + 
Sbjct: 5   EMDTKEKLEQAAIVKEKGTVYFKGGKYVQAVIQYGKIVSWLEMEY--GLSEKESKASESF 62

Query: 232 KNPCHLNMAACLLKLKRYEEAIGQCSLVLGEDENNVKALFRRGKARAELGQTDAAREDFL 291
                LN+A C LKL+ Y +A+  C   LG D  N K L+RRG+A+  + + ++A+ DF 
Sbjct: 63  LLAAFLNLAMCYLKLREYTKAVECCDKALGLDSANEKGLYRRGEAQLLMNEFESAKGDFE 122

Query: 292 KAGKFAPEDKSIARELRLLAEHEKAVYKKQKEIYKGIF 329
           K  +  P++K+   ++ +  +  K   ++ +  Y  +F
Sbjct: 123 KVLEVNPQNKAARLQIFMCQKKAKEHNERDRRTYANMF 160

>d1p5qa1 a.118.8.1 (A:258-427) FKBP52 (FKBP4), C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 170

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: FKBP52 (FKBP4), C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 70.5 bits (171), Expect = 3e-15
 Identities = 49/168 (29%), Positives = 85/168 (50%), Gaps = 2/168 (1%)

Query: 172 DMTVEERIGAADRRKMDGNALFKEEKLEEAMQQYEMAIAYMGDDFMFQLFGKYRDMALAV 231
           +M  EE++  +   K  G   FKE K ++A+ QY+  ++++  +  F    +    A A+
Sbjct: 3   EMNSEEKLEQSTIVKERGTVYFKEGKYKQALLQYKKIVSWLEYESSFS--NEEAQKAQAL 60

Query: 232 KNPCHLNMAACLLKLKRYEEAIGQCSLVLGEDENNVKALFRRGKARAELGQTDAAREDFL 291
           +   HLN+A C LKL+ +  AI  C+  L  D NN K L RRG+A   +   + AR DF 
Sbjct: 61  RLASHLNLAMCHLKLQAFSAAIESCNKALELDSNNEKGLSRRGEAHLAVNDFELARADFQ 120

Query: 292 KAGKFAPEDKSIARELRLLAEHEKAVYKKQKEIYKGIFGPRPEPKQKK 339
           K  +  P +K+   +L +  +  +    ++K++Y  +F    E + K 
Sbjct: 121 KVLQLYPNNKAAKTQLAVCQQRIRRQLAREKKLYANMFERLAEEENKA 168

>d2fbna1 a.118.8.1 (A:22-174) Putative 70 kda peptidylprolyl isomerase PFL2275c {Plasmodium falciparum [TaxId: 5833]} Length = 153

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Putative 70 kda peptidylprolyl isomerase PFL2275c
species: Plasmodium falciparum [TaxId: 5833]

 Score = 65.0 bits (157), Expect = 2e-13
 Identities = 47/148 (31%), Positives = 73/148 (49%), Gaps = 1/148 (0%)

Query: 168 KARSDMTVEERIGAADRRKMDGNALFKEEKLEEAMQQYEMAIAYMGDDFMFQLFGKYRDM 227
           K+  D T EE++ +A   K +GN  FK+ ++ EA+ +Y+ A+ +      +       D 
Sbjct: 3   KSIYDYTDEEKVQSAFDIKEEGNEFFKKNEINEAIVKYKEALDFFIHTEEWD-DQILLDK 61

Query: 228 ALAVKNPCHLNMAACLLKLKRYEEAIGQCSLVLGEDENNVKALFRRGKARAELGQTDAAR 287
              ++  C+LN+A C  K K Y +AI   S VL  D+NNVKAL++ G A    G  + A+
Sbjct: 62  KKNIEISCNLNLATCYNKNKDYPKAIDHASKVLKIDKNNVKALYKLGVANMYFGFLEEAK 121

Query: 288 EDFLKAGKFAPEDKSIARELRLLAEHEK 315
           E+  KA    P +  I     L     K
Sbjct: 122 ENLYKAASLNPNNLDIRNSYELCVNKLK 149

>d1ihga1 a.118.8.1 (A:197-365) Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]} Length = 169

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Cyclophilin 40
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 63.2 bits (152), Expect = 1e-12
 Identities = 47/151 (31%), Positives = 73/151 (48%), Gaps = 1/151 (0%)

Query: 175 VEERIGAADRRKMDGNALFKEEKLEEAMQQYEMAIAYMGDDFMFQLFGKYRDMALAVKNP 234
           V++ +  ++  K  GN  FK +  E A+++Y   + Y+              +   V   
Sbjct: 20  VDKILLISEDLKNIGNTFFKSQNWEMAIKKYTKVLRYVEGSRAAAEDADGAKLQ-PVALS 78

Query: 235 CHLNMAACLLKLKRYEEAIGQCSLVLGEDENNVKALFRRGKARAELGQTDAAREDFLKAG 294
           C LN+ AC LK+  ++ A+  C   L  D +N KAL+RR +    L + D A  D  KA 
Sbjct: 79  CVLNIGACKLKMSDWQGAVDSCLEALEIDPSNTKALYRRAQGWQGLKEYDQALADLKKAQ 138

Query: 295 KFAPEDKSIARELRLLAEHEKAVYKKQKEIY 325
           + APEDK+I  EL  + +  KA   K+K  Y
Sbjct: 139 EIAPEDKAIQAELLKVKQKIKAQKDKEKAAY 169

>d1pbka_ d.26.1.1 (A:) FKBP25 {Human (Homo sapiens) [TaxId: 9606]} Length = 116

class: Alpha and beta proteins (a+b)
fold: FKBP-like
superfamily: FKBP-like
family: FKBP immunophilin/proline isomerase
domain: FKBP25
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 61.4 bits (148), Expect = 2e-12
 Identities = 29/117 (24%), Positives = 44/117 (37%), Gaps = 9/117 (7%)

Query: 53  KVTKQIIKEGHG-QKPSKYSTCFLHYRAWAE------STRHKFDDTWLEQQPLEMVLGKE 105
           K TK ++K+G     P K       Y    +      +            +PL   +   
Sbjct: 2   KYTKSVLKKGDKTNFPKKGDVVHCWYTGTLQDGTVFDTNIQTSAKKKKNAKPLSFKV-GV 60

Query: 106 KKEMTGLAIGVSSMKAGEHALLHVGWELGYGKEGSFSFPNVSPMADLVYEVVLIGFD 162
            K + G    + +M  GE A L +  E  YGK+G      + P A L +EV L+  D
Sbjct: 61  GKVIRGWDEALLTMSKGEKARLEIEPEWAYGKKGQ-PDAKIPPNAKLTFEVELVDID 116

>d1u79a_ d.26.1.1 (A:) FKBP13 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} Length = 125

class: Alpha and beta proteins (a+b)
fold: FKBP-like
superfamily: FKBP-like
family: FKBP immunophilin/proline isomerase
domain: FKBP13
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

 Score = 59.5 bits (143), Expect = 1e-11
 Identities = 21/111 (18%), Positives = 38/111 (34%), Gaps = 7/111 (6%)

Query: 57  QIIKEGHGQKPSKYSTCFLHYRAWAESTRHKFD----DTWLEQQPLEMVLGKEKKEMTGL 112
                G+G +  K      HY    E+ +           L  +     + K   +    
Sbjct: 13  CDKVVGYGPEAVKGQLIKAHYVGKLENGKVFDSSYNRGKPLTFRIGVGEVIKGWDQGILG 72

Query: 113 AIGVSSMKAGEHALLHVGWELGYGKEGS---FSFPNVSPMADLVYEVVLIG 160
           + G+  M  G    L +  EL YG  G+        + P + L++++  IG
Sbjct: 73  SDGIPPMLTGGKRTLRIPPELAYGDRGAGCKGGSCLIPPASVLLFDIEYIG 123

>d1q1ca2 d.26.1.1 (A:141-257) FKBP52, N-terminal domains {Human (Homo sapiens) [TaxId: 9606]} Length = 117

class: Alpha and beta proteins (a+b)
fold: FKBP-like
superfamily: FKBP-like
family: FKBP immunophilin/proline isomerase
domain: FKBP52, N-terminal domains
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 58.2 bits (140), Expect = 2e-11
 Identities = 24/114 (21%), Positives = 49/114 (42%), Gaps = 7/114 (6%)

Query: 54  VTKQIIKEGHG-QKPSKYSTCFLHYRAWAESTRHKFDDTWLEQQPLEMVLGKEKKEMTGL 112
           + ++I   G G  KP++ +   +    + +            +   E+  G+      GL
Sbjct: 10  IIRRIQTRGEGYAKPNEGAIVEVALEGYYKDKLF-----DQRELRFEIGEGENLDLPYGL 64

Query: 113 AIGVSSMKAGEHALLHVGWELGYGKEGSFSFPNVSPMADLVYEVVLIGFDETKE 166
              +  M+ GEH+++++     +G  G      + P A+L YE+ L  F++ KE
Sbjct: 65  ERAIQRMEKGEHSIVYLKPSYAFGSVGK-EKFQIPPNAELKYELHLKSFEKAKE 117

>d1r9ha_ d.26.1.1 (A:) FKB-6, N-terminal domain {Caenorhabditis elegans [TaxId: 6239]} Length = 118

class: Alpha and beta proteins (a+b)
fold: FKBP-like
superfamily: FKBP-like
family: FKBP immunophilin/proline isomerase
domain: FKB-6, N-terminal domain
species: Caenorhabditis elegans [TaxId: 6239]

 Score = 57.8 bits (139), Expect = 3e-11
 Identities = 39/125 (31%), Positives = 54/125 (43%), Gaps = 12/125 (9%)

Query: 38  DGPPKVDSEVEVLHEKVTKQIIKEGHGQ-KPSKYSTCFLHYRAWAESTRHKFDDTWLEQQ 96
           D  PK D         V K I KEG G  KP+  +T  +HY    E+   KFD +     
Sbjct: 3   DITPKKDG-------GVLKLIKKEGQGVVKPTTGTTVKVHYVGTLENGT-KFDSSRDRGD 54

Query: 97  PLEMVLGKEKKEMTGLAIGVSSMKAGEHALLHVGWELGYGKEGSFSFPNVSPMADLVYEV 156
                LG+         +GV++M  GE A   +  + GYG  GS   P +   A L++EV
Sbjct: 55  QFSFNLGRGNVIKGW-DLGVATMTKGEVAEFTIRSDYGYGDAGSP--PKIPGGATLIFEV 111

Query: 157 VLIGF 161
            L  +
Sbjct: 112 ELFEW 116

>d1q6ha_ d.26.1.1 (A:) Peptidyl-prolyl cis-trans isomerase FkpA {Escherichia coli [TaxId: 562]} Length = 210

class: Alpha and beta proteins (a+b)
fold: FKBP-like
superfamily: FKBP-like
family: FKBP immunophilin/proline isomerase
domain: Peptidyl-prolyl cis-trans isomerase FkpA
species: Escherichia coli [TaxId: 562]

 Score = 57.9 bits (139), Expect = 2e-10
 Identities = 29/120 (24%), Positives = 54/120 (45%), Gaps = 7/120 (5%)

Query: 42  KVDSEVEVLHEKVTKQIIKEGHGQKPSKYSTCFLHYRAWAESTRHKFDDTWLEQQPLEMV 101
             +  V+     +  Q+++ G G+ P    T  ++Y+      + +FD+++   +PL   
Sbjct: 97  AKEKGVKTSSTGLVYQVVEAGKGEAPKDSDTVVVNYKGTLIDGK-EFDNSYTRGEPLSFR 155

Query: 102 LGKEKKEMTGLAIGVSSMKAGEHALLHVGWELGYGKEGSFSFPNVSPMADLVYEVVLIGF 161
           L        G   G+ ++K G    L +  EL YGK G    P + P + LV++V L+  
Sbjct: 156 LDGVIP---GWTEGLKNIKKGGKIKLVIPPELAYGKAGV---PGIPPNSTLVFDVELLDV 209

>d1kt1a3 d.26.1.1 (A:139-253) FKBP51, N-terminal domains {Monkey (Saimiri boliviensis) [TaxId: 27679]} Length = 115

class: Alpha and beta proteins (a+b)
fold: FKBP-like
superfamily: FKBP-like
family: FKBP immunophilin/proline isomerase
domain: FKBP51, N-terminal domains
species: Monkey (Saimiri boliviensis) [TaxId: 27679]

 Score = 55.4 bits (133), Expect = 2e-10
 Identities = 22/111 (19%), Positives = 45/111 (40%), Gaps = 7/111 (6%)

Query: 54  VTKQIIKEGHG-QKPSKYSTCFLHYRAWAESTRHKFDDTWLEQQPLEMVLGKEKKEMTGL 112
           + ++  + G G   P++ +   +H                       +  G++     G+
Sbjct: 10  IIRRTKRRGEGYSNPNEGARVQIHLEGRCGGRVF-----DCRDVAFTVGEGEDHDIPIGI 64

Query: 113 AIGVSSMKAGEHALLHVGWELGYGKEGSFSFPNVSPMADLVYEVVLIGFDE 163
              +  M+  E  +LH+G   G+G+ G      + P A+L+YEV L  F++
Sbjct: 65  DKALEKMQREEQCILHLGPRYGFGEAGK-PKFGIEPNAELIYEVTLKSFEK 114

>d1yata_ d.26.1.1 (A:) Calcineurin (FKBP12.6) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 113

class: Alpha and beta proteins (a+b)
fold: FKBP-like
superfamily: FKBP-like
family: FKBP immunophilin/proline isomerase
domain: Calcineurin (FKBP12.6)
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 54.0 bits (129), Expect = 6e-10
 Identities = 28/116 (24%), Positives = 44/116 (37%), Gaps = 5/116 (4%)

Query: 48  EVLHEKVTKQIIKEGHGQK-PSKYSTCFLHYRAWAESTRHKFDDTWLEQQPLEMVLGKEK 106
           EV+   V    I  G G   P       +HY    E    KFD +     P +       
Sbjct: 2   EVIEGNVKIDRISPGDGATFPKTGDLVTIHYTGTLE-NGQKFDSSVDRGSPFQCN-IGVG 59

Query: 107 KEMTGLAIGVSSMKAGEHALLHVGWELGYGKEGSFSFPNVSPMADLVYEVVLIGFD 162
           + + G  +G+  +  GE A L +     YG  G      + P + LV++V L+  +
Sbjct: 60  QVIKGWDVGIPKLSVGEKARLTIPGPYAYGPRG--FPGLIPPNSTLVFDVELLKVN 113

>d1q1ca1 d.26.1.1 (A:21-140) FKBP52, N-terminal domains {Human (Homo sapiens) [TaxId: 9606]} Length = 120

class: Alpha and beta proteins (a+b)
fold: FKBP-like
superfamily: FKBP-like
family: FKBP immunophilin/proline isomerase
domain: FKBP52, N-terminal domains
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 53.6 bits (128), Expect = 1e-09
 Identities = 36/126 (28%), Positives = 48/126 (38%), Gaps = 14/126 (11%)

Query: 38  DGPPKVDSEVEVLHEKVTKQIIKEGHG-QKPSKYSTCFLHYRAWAES-TRHKFDDTWLEQ 95
           D  PK D         V K I +EG G + P      F+HY  W    T+        ++
Sbjct: 4   DISPKQDE-------GVLKVIKREGTGTEMPMIGDRVFVHYTGWLLDGTKFDSSLDRKDK 56

Query: 96  QPLEMVLGKEKKEMTGLAIGVSSMKAGEHALLHVGWELGYGKEGSFSFPNVSPMADLVYE 155
              ++  G+  K           MK GE   +    E  YG  GS   P + P A LV+E
Sbjct: 57  FSFDLGKGEVIKAWDIAIAT---MKVGEVCHITCKPEYAYGSAGSP--PKIPPNATLVFE 111

Query: 156 VVLIGF 161
           V L  F
Sbjct: 112 VELFEF 117

>d2ppna1 d.26.1.1 (A:1-107) FK-506 binding protein (FKBP12), an immunophilin {Human (Homo sapiens) [TaxId: 9606]} Length = 107

class: Alpha and beta proteins (a+b)
fold: FKBP-like
superfamily: FKBP-like
family: FKBP immunophilin/proline isomerase
domain: FK-506 binding protein (FKBP12), an immunophilin
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 51.7 bits (123), Expect = 4e-09
 Identities = 32/110 (29%), Positives = 52/110 (47%), Gaps = 5/110 (4%)

Query: 54  VTKQIIKEGHGQK-PSKYSTCFLHYRAWAESTRHKFDDTWLEQQPLEMVLGKEKKEMTGL 112
           V  + I  G G+  P +  TC +HY    E  + KFD +    +P + +LGK++      
Sbjct: 2   VQVETISPGDGRTFPKRGQTCVVHYTGMLEDGK-KFDSSRDRNKPFKFMLGKQEVIRG-W 59

Query: 113 AIGVSSMKAGEHALLHVGWELGYGKEGSFSFPNVSPMADLVYEVVLIGFD 162
             GV+ M  G+ A L +  +  YG  G      + P A LV++V L+  +
Sbjct: 60  EEGVAQMSVGQRAKLTISPDYAYGATGHP--GIIPPHATLVFDVELLKLE 107

>d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]} Length = 388

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: O-GlcNAc transferase p110 subunit, OGT
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 53.9 bits (128), Expect = 1e-08
 Identities = 16/129 (12%), Positives = 32/129 (24%), Gaps = 17/129 (13%)

Query: 189 GNALFKEEKLEEAMQQYEMAIAY-----------------MGDDFMFQLFGKYRDMALAV 231
               +++  ++ A+  Y  AI                    G     +            
Sbjct: 244 ACVYYEQGLIDLAIDTYRRAIELQPHFPDAYCNLANALKEKGSVAEAEDCYNTALRLCPT 303

Query: 232 KNPCHLNMAACLLKLKRYEEAIGQCSLVLGEDENNVKALFRRGKARAELGQTDAAREDFL 291
                 N+A    +    EEA+      L        A         + G+   A   + 
Sbjct: 304 HADSLNNLANIKREQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYK 363

Query: 292 KAGKFAPED 300
           +A + +P  
Sbjct: 364 EAIRISPTF 372

>d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]} Length = 388

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: O-GlcNAc transferase p110 subunit, OGT
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 47.4 bits (111), Expect = 1e-06
 Identities = 10/64 (15%), Positives = 21/64 (32%)

Query: 237 LNMAACLLKLKRYEEAIGQCSLVLGEDENNVKALFRRGKARAELGQTDAAREDFLKAGKF 296
           + +A    +   +E A   C  +  ++ +N   L        +  + D +      A K 
Sbjct: 3   MELAHREYQAGDFEAAERHCMQLWRQEPDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQ 62

Query: 297 APED 300
            P  
Sbjct: 63  NPLL 66

>d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]} Length = 388

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: O-GlcNAc transferase p110 subunit, OGT
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 46.6 bits (109), Expect = 2e-06
 Identities = 15/95 (15%), Positives = 30/95 (31%), Gaps = 17/95 (17%)

Query: 187 MDGNALFKEEKLEEAMQQYEMAIAYMGDDFMFQLFGKYRDMALAVKNPCHLNMAACLLKL 246
              N   ++  +EEA++ Y  A+    +                     H N+A+ L + 
Sbjct: 310 NLANIKREQGNIEEAVRLYRKALEVFPEFAAA-----------------HSNLASVLQQQ 352

Query: 247 KRYEEAIGQCSLVLGEDENNVKALFRRGKARAELG 281
            + +EA+      +        A    G    E+ 
Sbjct: 353 GKLQEALMHYKEAIRISPTFADAYSNMGNTLKEMQ 387

>d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]} Length = 388

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: O-GlcNAc transferase p110 subunit, OGT
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 46.2 bits (108), Expect = 3e-06
 Identities = 26/143 (18%), Positives = 47/143 (32%), Gaps = 23/143 (16%)

Query: 189 GNALFKEEKLEEAMQQYEMAIAYMGDDFMFQLFGKYRDMALAVKNPCHLNMAACLLKLKR 248
           GN L +    + A+  Y  A++   +  +                  H N+A    +   
Sbjct: 210 GNVLKEARIFDRAVAAYLRALSLSPNHAV-----------------VHGNLACVYYEQGL 252

Query: 249 YEEAIGQCSLVLGEDENNVKALFRRGKARAELGQTDAAREDFLKAGKFAPEDK----SIA 304
            + AI      +    +   A      A  E G    A + +  A +  P       ++A
Sbjct: 253 IDLAIDTYRRAIELQPHFPDAYCNLANALKEKGSVAEAEDCYNTALRLCPTHADSLNNLA 312

Query: 305 RELRLLAEHEKAV--YKKQKEIY 325
              R     E+AV  Y+K  E++
Sbjct: 313 NIKREQGNIEEAVRLYRKALEVF 335

>d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]} Length = 388

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: O-GlcNAc transferase p110 subunit, OGT
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 44.7 bits (104), Expect = 1e-05
 Identities = 8/88 (9%), Positives = 25/88 (28%), Gaps = 17/88 (19%)

Query: 189 GNALFKEEKLEEAMQQYEMAIAYMGDDFMFQLFGKYRDMALAVKNPCHLNMAACLLKLKR 248
            +  ++    E A +          D+                     L +++   + +R
Sbjct: 6   AHREYQAGDFEAAERHCMQLWRQEPDNT-----------------GVLLLLSSIHFQCRR 48

Query: 249 YEEAIGQCSLVLGEDENNVKALFRRGKA 276
            + +    +L + ++    +A    G  
Sbjct: 49  LDRSAHFSTLAIKQNPLLAEAYSNLGNV 76

>d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]} Length = 388

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: O-GlcNAc transferase p110 subunit, OGT
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 43.9 bits (102), Expect = 2e-05
 Identities = 24/168 (14%), Positives = 48/168 (28%), Gaps = 18/168 (10%)

Query: 182 ADRRKMDGNALFKEEKLEEAMQQYEMAIAYMGDDFMFQLFGKYRDMALAVKNPCHLNMAA 241
           A      G     + ++  A+  +E A+    +                     ++N+  
Sbjct: 169 AVAWSNLGCVFNAQGEIWLAIHHFEKAVTLDPNFL-----------------DAYINLGN 211

Query: 242 CLLKLKRYEEAIGQCSLVLGEDENNVKALFRRGKARAELGQTDAAREDFLKAGKFAPEDK 301
            L + + ++ A+      L    N+            E G  D A + + +A +  P   
Sbjct: 212 VLKEARIFDRAVAAYLRALSLSPNHAVVHGNLACVYYEQGLIDLAIDTYRRAIELQPHF- 270

Query: 302 SIARELRLLAEHEKAVYKKQKEIYKGIFGPRPEPKQKKNWLIIFWQLL 349
             A      A  EK    + ++ Y       P      N L    +  
Sbjct: 271 PDAYCNLANALKEKGSVAEAEDCYNTALRLCPTHADSLNNLANIKREQ 318

>d1kt1a2 d.26.1.1 (A:28-138) FKBP51, N-terminal domains {Monkey (Saimiri boliviensis) [TaxId: 27679]} Length = 111

class: Alpha and beta proteins (a+b)
fold: FKBP-like
superfamily: FKBP-like
family: FKBP immunophilin/proline isomerase
domain: FKBP51, N-terminal domains
species: Monkey (Saimiri boliviensis) [TaxId: 27679]

 Score = 49.4 bits (117), Expect = 2e-08
 Identities = 33/109 (30%), Positives = 52/109 (47%), Gaps = 5/109 (4%)

Query: 54  VTKQIIKEGHGQK-PSKYSTCFLHYRAWAESTRHKFDDTWLEQQPLEMVLGKEKKEMTGL 112
           V K + + GHG++ P      ++HY     + + KFD +    +P    +G + + +   
Sbjct: 6   VLKIVKRVGHGEETPMIGDRVYVHYNGKLANGK-KFDSSHDRNEPFVFSIG-KGQVIKAW 63

Query: 113 AIGVSSMKAGEHALLHVGWELGYGKEGSFSFPNVSPMADLVYEVVLIGF 161
            IGV++MK GE   L    E  YG  GS   P +   A L +EV L+ F
Sbjct: 64  DIGVATMKKGEICHLLCKPEYAYGATGSL--PKIPSNATLFFEVELLDF 110

>d2c2la1 a.118.8.1 (A:24-224) STIP1 homology and U box-containing protein 1, STUB1 {Mouse (Mus musculus) [TaxId: 10090]} Length = 201

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: STIP1 homology and U box-containing protein 1, STUB1
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 48.4 bits (114), Expect = 2e-07
 Identities = 35/147 (23%), Positives = 54/147 (36%), Gaps = 18/147 (12%)

Query: 181 AADRRKMDGNALFKEEKLEEAMQQYEMAIAYMGDDFMFQLFGKYRDMALAVKNPCHLNMA 240
           +A   K  GN LF   K  EA   Y  AI       +                  + N A
Sbjct: 3   SAQELKEQGNRLFVGRKYPEAAACYGRAITRNPLVAV-----------------YYTNRA 45

Query: 241 ACLLKLKRYEEAIGQCSLVLGEDENNVKALFRRGKARAELGQTDAAREDFLKAGKFAPED 300
            C LK+++ E+A+  C   L  D  +VKA F  G+ + E+   D A  +  +A   A E 
Sbjct: 46  LCYLKMQQPEQALADCRRALELDGQSVKAHFFLGQCQLEMESYDEAIANLQRAYSLAKEQ 105

Query: 301 K-SIARELRLLAEHEKAVYKKQKEIYK 326
           + +   ++       K       E  +
Sbjct: 106 RLNFGDDIPSALRIAKKKRWNSIEERR 132

>d1fd9a_ d.26.1.1 (A:) Macrophage infectivity potentiator protein (MIP) {Legionella pneumophila [TaxId: 446]} Length = 204

class: Alpha and beta proteins (a+b)
fold: FKBP-like
superfamily: FKBP-like
family: FKBP immunophilin/proline isomerase
domain: Macrophage infectivity potentiator protein (MIP)
species: Legionella pneumophila [TaxId: 446]

 Score = 48.3 bits (114), Expect = 2e-07
 Identities = 25/123 (20%), Positives = 43/123 (34%), Gaps = 6/123 (4%)

Query: 42  KVDSEVEVLHEKVTKQIIKEGHGQKPSKYSTCFLHYRAWAESTRHKFDDTWLEQQPLEMV 101
           K    V VL   +  ++I  G+G KP K  T  + Y                  +P    
Sbjct: 88  KNKPGVVVLPSGLQYKVINSGNGVKPGKSDTVTVEYTGRLIDGTVFDSTEK-TGKPATFQ 146

Query: 102 LGKEKKEMTGLAIGVSSMKAGEHALLHVGWELGYGKEGSFSFPNVSPMADLVYEVVLIGF 161
           + +     T     +  M AG    ++V   L YG         + P   L++++ LI  
Sbjct: 147 VSQVIPGWT---EALQLMPAGSTWEIYVPSGLAYGPRS--VGGPIGPNETLIFKIHLISV 201

Query: 162 DET 164
            ++
Sbjct: 202 KKS 204

>d1hh8a_ a.118.8.1 (A:) Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {Human (Homo sapiens) [TaxId: 9606]} Length = 192

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Neutrophil cytosolic factor 2 (NCF-2, p67-phox)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 46.0 bits (108), Expect = 1e-06
 Identities = 21/182 (11%), Positives = 46/182 (25%), Gaps = 32/182 (17%)

Query: 189 GNALFKEEKLEEAMQQYEMAI-----AYMGDDFMFQLFGKYRDMALAVKN---------P 234
           G     ++  + A+  +                M+ +     +   A             
Sbjct: 12  GVLAADKKDWKGALDAFSAVQDPHSRICFNIGCMYTILKNMTEAEKAFTRSINRDKHLAV 71

Query: 235 CHLNMAACLLKLKRYEEAIGQCSLVLGEDENN----------------VKALFRRGKARA 278
            +        + ++Y+ AI      L +   N                 + L+      A
Sbjct: 72  AYFQRGMLYYQTEKYDLAIKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYA 131

Query: 279 ELGQTDAAREDFLKAGKFAPEDKSIARELRLLAEHEKAVYKKQKEIYKGIFGPRPEPKQK 338
           +  +   A E    A     E +  ++  + +    K    +   I  G    RP  +Q 
Sbjct: 132 KKEEWKKAEEQLALATSMKSEPRH-SKIDKAMECVWKQKLYEPVVIPVGRLF-RPNERQV 189

Query: 339 KN 340
             
Sbjct: 190 AQ 191

>d2hr2a1 a.118.8.8 (A:2-157) Hypothetical protein CT2138 {Chlorobium tepidum [TaxId: 1097]} Length = 156

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: CT2138-like
domain: Hypothetical protein CT2138
species: Chlorobium tepidum [TaxId: 1097]

 Score = 42.4 bits (98), Expect = 1e-05
 Identities = 26/152 (17%), Positives = 47/152 (30%), Gaps = 20/152 (13%)

Query: 177 ERIGAADRRKMDGNALFKEEKLEEAMQQYEMAIAYMGDDFMFQLFGKYRDMALAVKNPCH 236
           + +  A     D        + +EA      A+         + F             CH
Sbjct: 4   KEVVGAYLALSDAQRQLVAGEYDEAAANCRRAMEISHTMPPEEAFDHAGFD-----AFCH 58

Query: 237 LNMAACLLKLKRYEEAIGQCSLVL-----------GEDENNVKALFRRGKARAELGQTDA 285
             +A  L  L+ ++EA+      L            E +  + A++ R  A   LG+   
Sbjct: 59  AGLAEALAGLRSFDEALHSADKALHYFNRRGELNQDEGKLWISAVYSRALALDGLGRGAE 118

Query: 286 AREDFLKAGKFAPEDK----SIARELRLLAEH 313
           A  +F K  +   E K       R + +  + 
Sbjct: 119 AMPEFKKVVEMIEERKGETPGKERMMEVAIDR 150

>d1a17a_ a.118.8.1 (A:) Protein phosphatase 5 {Human (Homo sapiens) [TaxId: 9606]} Length = 159

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Protein phosphatase 5
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 42.3 bits (98), Expect = 2e-05
 Identities = 23/152 (15%), Positives = 48/152 (31%), Gaps = 18/152 (11%)

Query: 176 EERIGAADRRKMDGNALFKEEKLEEAMQQYEMAIAYMGDDFMFQLFGKYRDMALAVKNPC 235
           +  +  A+  K   N  FK +  E A++ Y  AI     + ++        +        
Sbjct: 4   DGALKRAEELKTQANDYFKAKDYENAIKFYSQAIELNPSNAIYYGNRSLAYLRTECYGYA 63

Query: 236 HLNMAACLLKLKRYEEAIGQCSLVLGEDENNVKALFRRGKARAELGQTDAAREDFLKAGK 295
             +    +                   D+  +K  +RR  +   LG+  AA  D+    K
Sbjct: 64  LGDATRAIEL-----------------DKKYIKGYYRRAASNMALGKFRAALRDYETVVK 106

Query: 296 FAPEDKSIAREL-RLLAEHEKAVYKKQKEIYK 326
             P DK    +        ++  +++     +
Sbjct: 107 VKPHDKDAKMKYQECNKIVKQKAFERAIAGDE 138

>d1zbpa1 e.61.1.1 (A:2-265) Hypothetical protein VPA1032 {Vibrio parahaemolyticus [TaxId: 670]} Length = 264

class: Multi-domain proteins (alpha and beta)
fold: ImpE-like
superfamily: ImpE-like
family: ImpE-like
domain: Hypothetical protein VPA1032
species: Vibrio parahaemolyticus [TaxId: 670]

 Score = 41.6 bits (97), Expect = 8e-05
 Identities = 16/147 (10%), Positives = 33/147 (22%), Gaps = 17/147 (11%)

Query: 189 GNALFKEEKLEEAMQQYEMAIAYMGDDFMFQLFGKYRDMALAVKNPCHLNMAACLLKLKR 248
                 E +L++A++    AI     D                      +    L     
Sbjct: 3   WKNALSEGQLQQALELLIEAIKASPKDA-----------------SLRSSFIELLCIDGD 45

Query: 249 YEEAIGQCSLVLGEDENNVKALFRRGKARAELGQTDAAREDFLKAGKFAPEDKSIARELR 308
           +E A  Q    +      +    +               +    A      ++     + 
Sbjct: 46  FERADEQLMQSIKLFPEYLPGASQLRHLVKAAQARKDFAQGAATAKVLGENEELTKSLVS 105

Query: 309 LLAEHEKAVYKKQKEIYKGIFGPRPEP 335
                    Y++  E+   I   R E 
Sbjct: 106 FNLSMVSQDYEQVSELALQIEELRQEK 132

>d1zbpa1 e.61.1.1 (A:2-265) Hypothetical protein VPA1032 {Vibrio parahaemolyticus [TaxId: 670]} Length = 264

class: Multi-domain proteins (alpha and beta)
fold: ImpE-like
superfamily: ImpE-like
family: ImpE-like
domain: Hypothetical protein VPA1032
species: Vibrio parahaemolyticus [TaxId: 670]

 Score = 40.0 bits (93), Expect = 2e-04
 Identities = 15/100 (15%), Positives = 30/100 (30%)

Query: 243 LLKLKRYEEAIGQCSLVLGEDENNVKALFRRGKARAELGQTDAAREDFLKAGKFAPEDKS 302
            L   + ++A+      +     +        +     G  + A E  +++ K  PE   
Sbjct: 6   ALSEGQLQQALELLIEAIKASPKDASLRSSFIELLCIDGDFERADEQLMQSIKLFPEYLP 65

Query: 303 IARELRLLAEHEKAVYKKQKEIYKGIFGPRPEPKQKKNWL 342
            A +LR L +  +A     +           E   K    
Sbjct: 66  GASQLRHLVKAAQARKDFAQGAATAKVLGENEELTKSLVS 105

>d1ya0a1 a.118.8.1 (A:1-497) SMG-7 {Human (Homo sapiens) [TaxId: 9606]} Length = 497

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: SMG-7
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 42.1 bits (98), Expect = 8e-05
 Identities = 16/134 (11%), Positives = 36/134 (26%), Gaps = 15/134 (11%)

Query: 182 ADRRKMDGNALFKEEKLEEAMQQ-----YEMAIAYMGDDFMF-----QLFGKYRDMALAV 231
            D +          + L++  Q+      E A+    +  ++           +  A   
Sbjct: 20  TDSKLGPAEVWTSRQALQDLYQKMLVTDLEYALDKKVEQDLWNHAFKNQITTLQGQAKNR 79

Query: 232 KNPCHLNMAACLLKL-----KRYEEAIGQCSLVLGEDENNVKALFRRGKARAELGQTDAA 286
            NP    + A L          Y + + +   V   D        + G    +   T A 
Sbjct: 80  ANPNRSEVQANLSLFLEAASGFYTQLLQELCTVFNVDLPCRVKSSQLGIISNKQTHTSAI 139

Query: 287 REDFLKAGKFAPED 300
            +    +  +  + 
Sbjct: 140 VKPQSSSCSYICQH 153

>d1elra_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]} Length = 128

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Hop
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 39.5 bits (91), Expect = 1e-04
 Identities = 24/142 (16%), Positives = 48/142 (33%), Gaps = 20/142 (14%)

Query: 182 ADRRKMDGNALFKEEKLEEAMQQYEMAIAYMGDDFMFQLFGKYRDMALAVKNPCHLNMAA 241
           A + K  GN  +K++  + A++ Y+ A      +                      N AA
Sbjct: 4   ALKEKELGNDAYKKKDFDTALKHYDKAKELDPTNMT-----------------YITNQAA 46

Query: 242 CLLKLKRYEEAIGQCSLVLGEDENNVKALFRRGKARAELGQTDAAREDFLKAGKF---AP 298
              +   Y +    C   +     N +   +  KA A +G +    E +  A  F   + 
Sbjct: 47  VYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKAYARIGNSYFKEEKYKDAIHFYNKSL 106

Query: 299 EDKSIARELRLLAEHEKAVYKK 320
            +      L+   + EK + ++
Sbjct: 107 AEHRTPDVLKKCQQAEKILKEQ 128

>d1xnfa_ a.118.8.1 (A:) Lipoprotein NlpI {Escherichia coli [TaxId: 562]} Length = 259

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Lipoprotein NlpI
species: Escherichia coli [TaxId: 562]

 Score = 40.6 bits (93), Expect = 2e-04
 Identities = 16/66 (24%), Positives = 26/66 (39%), Gaps = 4/66 (6%)

Query: 239 MAACLLKLKRYEEAIGQCSLVLGE----DENNVKALFRRGKARAELGQTDAAREDFLKAG 294
           +A  L    + E  + +   +L      D+   + L+ RG     LG    AR DF +A 
Sbjct: 5   LAVPLQPTLQQEVILARMEQILASRALTDDERAQLLYERGVLYDSLGLRALARNDFSQAL 64

Query: 295 KFAPED 300
              P+ 
Sbjct: 65  AIRPDM 70

>d1elwa_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]} Length = 117

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Hop
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 38.1 bits (87), Expect = 3e-04
 Identities = 20/114 (17%), Positives = 31/114 (27%), Gaps = 17/114 (14%)

Query: 182 ADRRKMDGNALFKEEKLEEAMQQYEMAIAYMGDDFMFQLFGKYRDMALAVKNPC------ 235
            +  K  GN       +++A+Q Y  AI     + +                        
Sbjct: 3   VNELKEKGNKALSVGNIDDALQCYSEAIKLDPHNHVLYSNRSAAYAKKGDYQKAYEDGCK 62

Query: 236 -----------HLNMAACLLKLKRYEEAIGQCSLVLGEDENNVKALFRRGKARA 278
                      +   AA L  L R+EEA       L  + NN +         A
Sbjct: 63  TVDLKPDWGKGYSRKAAALEFLNRFEEAKRTYEEGLKHEANNPQLKEGLQNMEA 116

>d1fcha_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Human (Homo sapiens) [TaxId: 9606]} Length = 323

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 39.0 bits (89), Expect = 5e-04
 Identities = 10/61 (16%), Positives = 20/61 (32%)

Query: 233 NPCHLNMAACLLKLKRYEEAIGQCSLVLGEDENNVKALFRRGKARAELGQTDAAREDFLK 292
           +P         L+      A+      + +D  +++A    G  +AE  Q   A     +
Sbjct: 19  HPQPFEEGLRRLQEGDLPNAVLLFEAAVQQDPKHMEAWQYLGTTQAENEQELLAISALRR 78

Query: 293 A 293
            
Sbjct: 79  C 79

>d1nzna_ a.118.8.1 (A:) Mitochondria fission protein Fis1 {Human (Homo sapiens) [TaxId: 9606]} Length = 122

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Mitochondria fission protein Fis1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 35.1 bits (80), Expect = 0.004
 Identities = 17/129 (13%), Positives = 37/129 (28%), Gaps = 17/129 (13%)

Query: 190 NALFKEEKLEEAMQQYEMAIAYMGDDFMFQLFGKYRDMALAVKNPCHLNMAACLLKLKRY 249
           N L   E L +  ++++   A        Q        A  +    + +           
Sbjct: 7   NELVSVEDLLKFEKKFQSEKAAGSVSKSTQFE-----YAWCLVRTRYNDD---------I 52

Query: 250 EEAIGQCSLVLGEDENN--VKALFRRGKARAELGQTDAAREDFLKAGKFAPEDKSIAREL 307
            + I     +L +         +F        L + + A +      +  P++   A+EL
Sbjct: 53  RKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLKEYEKALKYVRGLLQTEPQNNQ-AKEL 111

Query: 308 RLLAEHEKA 316
             L +    
Sbjct: 112 ERLIDKAMK 120

>d1hz4a_ a.118.8.2 (A:) Transcription factor MalT domain III {Escherichia coli [TaxId: 562]} Length = 366

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Transcription factor MalT domain III
domain: Transcription factor MalT domain III
species: Escherichia coli [TaxId: 562]

 Score = 36.4 bits (82), Expect = 0.004
 Identities = 15/141 (10%), Positives = 32/141 (22%), Gaps = 19/141 (13%)

Query: 189 GNALFKEEKLEEAMQQYEMAIAYMGDDFMFQLFGKYRDMALAVKNPCHLNMAACLLKLKR 248
                       A             +  F                   N+A   + L  
Sbjct: 220 VIYWQMTGDKAAAANWLRHTAKPEFANNHFLQG-------------QWRNIARAQILLGE 266

Query: 249 YEEAIGQCSLVL------GEDENNVKALFRRGKARAELGQTDAAREDFLKAGKFAPEDKS 302
           +E A      +           +  + L    +   + G+   A+   L A K A     
Sbjct: 267 FEPAEIVLEELNENARSLRLMSDLNRNLLLLNQLYWQAGRKSDAQRVLLDALKLANRTGF 326

Query: 303 IARELRLLAEHEKAVYKKQKE 323
           I+  +       + + +  + 
Sbjct: 327 ISHFVIEGEAMAQQLRQLIQL 347

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	365
d1q1ca1	120	FKBP52, N-terminal domains {Human (Homo sapiens) [	99.95
d1kt1a1	168	FKBP51, C-terminal domain {Monkey (Saimiri bolivie	99.95
d1r9ha_	118	FKB-6, N-terminal domain {Caenorhabditis elegans [	99.95
d1p5qa1	170	FKBP52 (FKBP4), C-terminal domain {Human (Homo sap	99.95
d1yata_	113	Calcineurin (FKBP12.6) {Baker's yeast (Saccharomyc	99.94
d1kt1a2	111	FKBP51, N-terminal domains {Monkey (Saimiri bolivi	99.94
d2ppna1	107	FK-506 binding protein (FKBP12), an immunophilin {	99.94
d1fd9a_	204	Macrophage infectivity potentiator protein (MIP) {	99.94
d1q6ha_	210	Peptidyl-prolyl cis-trans isomerase FkpA {Escheric	99.94
d1pbka_	116	FKBP25 {Human (Homo sapiens) [TaxId: 9606]}	99.93
d2fbna1	153	Putative 70 kda peptidylprolyl isomerase PFL2275c	99.93
d1jvwa_	160	Macrophage infectivity potentiator protein (MIP) {	99.92
d1u79a_	125	FKBP13 {Thale cress (Arabidopsis thaliana) [TaxId:	99.91
d1kt1a3	115	FKBP51, N-terminal domains {Monkey (Saimiri bolivi	99.89
d1ihga1	169	Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]}	99.88
d1q1ca2	117	FKBP52, N-terminal domains {Human (Homo sapiens) [	99.87
d1elwa_	117	Hop {Human (Homo sapiens) [TaxId: 9606]}	99.85
d1a17a_	159	Protein phosphatase 5 {Human (Homo sapiens) [TaxId	99.84
d2c2la1	201	STIP1 homology and U box-containing protein 1, STU	99.79
d1elra_	128	Hop {Human (Homo sapiens) [TaxId: 9606]}	99.74
d1nzna_	122	Mitochondria fission protein Fis1 {Human (Homo sap	99.66
d1xnfa_	259	Lipoprotein NlpI {Escherichia coli [TaxId: 562]}	99.63
d1zu2a1	145	Mitochondrial import receptor subunit tom20-3 {Tha	99.59
d1ix5a_	151	Archaeal FKBP {Archaeon Methanococcus thermolithot	99.58
d1hh8a_	192	Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {H	99.58
d2hr2a1	156	Hypothetical protein CT2138 {Chlorobium tepidum [T	99.56
d2h6fa1	315	Protein farnesyltransferase alpha-subunit {Human (	99.54
d1hxia_	112	Peroxin pex5 (peroxisomal targeting signal 1 (PTS1	99.52
d1xnfa_	259	Lipoprotein NlpI {Escherichia coli [TaxId: 562]}	99.48
d2h6fa1	315	Protein farnesyltransferase alpha-subunit {Human (	99.47
d1w3ba_	388	O-GlcNAc transferase p110 subunit, OGT {Human (Hom	99.45
d1hxva_	85	Trigger factor PPIase domain {Mycoplasma genitaliu	99.44
d1hh8a_	192	Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {H	99.43
d1fcha_	323	Peroxin pex5 (peroxisomal targeting signal 1 (PTS1	99.43
d1w3ba_	388	O-GlcNAc transferase p110 subunit, OGT {Human (Hom	99.43
d1hxia_	112	Peroxin pex5 (peroxisomal targeting signal 1 (PTS1	99.38
d1elwa_	117	Hop {Human (Homo sapiens) [TaxId: 9606]}	99.36
d1a17a_	159	Protein phosphatase 5 {Human (Homo sapiens) [TaxId	99.34
d1tjca_	95	Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human	99.33
d2c2la1	201	STIP1 homology and U box-containing protein 1, STU	99.32
d1fcha_	323	Peroxin pex5 (peroxisomal targeting signal 1 (PTS1	99.32
d2ff4a2	179	Probable regulatory protein EmbR, middle domain {M	99.3
d1tjca_	95	Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human	99.24
d1elra_	128	Hop {Human (Homo sapiens) [TaxId: 9606]}	99.14
d1ihga1	169	Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]}	99.05
d1kt1a1	168	FKBP51, C-terminal domain {Monkey (Saimiri bolivie	99.02
d1ya0a1	497	SMG-7 {Human (Homo sapiens) [TaxId: 9606]}	99.0
d1p5qa1	170	FKBP52 (FKBP4), C-terminal domain {Human (Homo sap	99.0
d1qqea_	290	Vesicular transport protein sec17 {Baker's yeast (	99.0
d1zu2a1	145	Mitochondrial import receptor subunit tom20-3 {Tha	98.96
d2fbna1	153	Putative 70 kda peptidylprolyl isomerase PFL2275c	98.95
d1nzna_	122	Mitochondria fission protein Fis1 {Human (Homo sap	98.91
d1dcea1	334	Rab geranylgeranyltransferase alpha-subunit, N-ter	98.87
d1dcea1	334	Rab geranylgeranyltransferase alpha-subunit, N-ter	98.85
d1qqea_	290	Vesicular transport protein sec17 {Baker's yeast (	98.84
d1l1pa_	106	Trigger factor PPIase domain {Escherichia coli [Ta	98.77
d1t11a3	113	Trigger factor PPIase domain {Vibrio cholerae [Tax	98.68
d2pqrb1	124	Mitochondria fission protein Fis1 {Baker's yeast (	98.66
d1zbpa1	264	Hypothetical protein VPA1032 {Vibrio parahaemolyti	98.63
d1ya0a1	497	SMG-7 {Human (Homo sapiens) [TaxId: 9606]}	98.56
d1hz4a_	366	Transcription factor MalT domain III {Escherichia	98.53
d2hr2a1	156	Hypothetical protein CT2138 {Chlorobium tepidum [T	98.47
d2ff4a2	179	Probable regulatory protein EmbR, middle domain {M	98.43
d1hz4a_	366	Transcription factor MalT domain III {Escherichia	98.34
d2onda1	308	Cleavage stimulation factor 77 kDa subunit CSTF3 {	98.33
d1zbpa1	264	Hypothetical protein VPA1032 {Vibrio parahaemolyti	98.32
d2pqrb1	124	Mitochondria fission protein Fis1 {Baker's yeast (	98.19
d2onda1	308	Cleavage stimulation factor 77 kDa subunit CSTF3 {	98.18
d1ouva_	265	Cysteine rich protein C (HcpC) {Helicobacter pylor	97.57
d1klxa_	133	Cysteine rich protein B (HcpB) {Helicobacter pylor	97.35
d1ouva_	265	Cysteine rich protein C (HcpC) {Helicobacter pylor	97.31
d1klxa_	133	Cysteine rich protein B (HcpB) {Helicobacter pylor	97.29
d1wfda_	93	Hypothetical protein 1500032H18Rik {Mouse (Mus mus	91.77
d2crba1	83	Nuclear receptor binding factor 2, NRBF2, N-termin	90.68
d1wr0a1	77	Vacuolar sorting protein 4b (VPS4B, SKD1 protein)	88.7
d1b89a_	336	Clathrin heavy chain proximal leg segment {Cow (Bo	88.6

>d1q1ca1 d.26.1.1 (A:21-140) FKBP52, N-terminal domains {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: FKBP-like
superfamily: FKBP-like
family: FKBP immunophilin/proline isomerase
domain: FKBP52, N-terminal domains
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.95  E-value=9.4e-28  Score=189.80  Aligned_cols=109  Identities=34%  Similarity=0.556  Sum_probs=103.1

Q ss_pred             CCCeEEEEEecCCCC-CCCCCCEEEEEEEEEEcCCCeeeccCcCCCCcceeecCCCCchhhhHHHHHhcCCcCcEEEEEe
Q 017811           51 HEKVTKQIIKEGHGQ-KPSKYSTCFLHYRAWAESTRHKFDDTWLEQQPLEMVLGKEKKEMTGLAIGVSSMKAGEHALLHV  129 (365)
Q Consensus        51 ~~gv~k~v~~~G~g~-~p~~g~~v~v~y~~~~~~~g~~fd~s~~~~~p~~f~lg~~~~~i~g~e~~l~~Mk~GE~~~~~i  129 (365)
                      ++||.|+|+++|.|. .|..||.|+|||++++.| |++||+|+.+++|++|.+|.+ ++|+||+.+|.+|++||+++|.|
T Consensus        10 d~gv~~~i~~~G~G~~~P~~gd~V~v~y~~~l~d-G~~fdss~~~~~p~~f~~g~~-~~i~G~~~~l~~M~~Ge~~~~~i   87 (120)
T d1q1ca1          10 DEGVLKVIKREGTGTEMPMIGDRVFVHYTGWLLD-GTKFDSSLDRKDKFSFDLGKG-EVIKAWDIAIATMKVGEVCHITC   87 (120)
T ss_dssp             SSSEEEEEEECCSSSCCCCTTCEEEEEEEEEETT-SCEEEESTTSSSCEEEETTTT-SSCHHHHHHHTTCCTTCEEEEEE
T ss_pred             CCCEEEEEEEcccCCcCCCCCCEEEEEEEEEEcC-CCEEEeccccccceeeecCCC-ceeeeeeeeeccccCCcEEEEEE
Confidence            379999999999997 799999999999999998 899999999899999999999 89999999999999999999999


Q ss_pred             ccccccCCCCCCCCCCCCCCCcEEEEEEEEeeec
Q 017811          130 GWELGYGKEGSFSFPNVSPMADLVYEVVLIGFDE  163 (365)
Q Consensus       130 ~~~~~yg~~g~~~~~~ip~~~~l~~~iel~~~~~  163 (365)
                      ||++|||+.|.  ++.|||+++|+|+|+|++++.
T Consensus        88 p~~laYG~~g~--~~~IPp~s~LifeIeLl~v~~  119 (120)
T d1q1ca1          88 KPEYAYGSAGS--PPKIPPNATLVFEVELFEFKG  119 (120)
T ss_dssp             CGGGTTTTTCB--TTTBCTTCCEEEEEEEEEEEC
T ss_pred             CHHHhCCCcCC--CCCCCcCCcEEEEEEEEEEeC
Confidence            99999999987  478999999999999999863

>d1kt1a1 a.118.8.1 (A:254-421) FKBP51, C-terminal domain {Monkey (Saimiri boliviensis) [TaxId: 27679]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: FKBP51, C-terminal domain
species: Monkey (Saimiri boliviensis) [TaxId: 27679]

Probab=99.95  E-value=5.2e-27  Score=197.49  Aligned_cols=163  Identities=25%  Similarity=0.421  Sum_probs=150.1

Q ss_pred             cCCCCCHHHHHHHHHHhhhhhhhhhhhhhHHHHHHHHHHHHHhhccchhhhhhhhHHHHHHHhhchhhhHHHHHHHHhcC
Q 017811          169 ARSDMTVEERIGAADRRKMDGNALFKEEKLEEAMQQYEMAIAYMGDDFMFQLFGKYRDMALAVKNPCHLNMAACLLKLKR  248 (365)
Q Consensus       169 ~~~~~~~~e~~~~a~~~k~~G~~~~~~~~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~kl~~  248 (365)
                      +.|.|+..++++.+..+++.|+.+|+.|+|.+|+..|++||.+++.....  ..........+...+|+|+|.||+++++
T Consensus         2 e~~~m~~~E~~~~a~~~~e~G~~~~~~~~~~~A~~~Y~~al~~~~~~~~~--~~~~~~~~~~~~~~~~~Nla~~~~~l~~   79 (168)
T d1kt1a1           2 ESWEMDTKEKLEQAAIVKEKGTVYFKGGKYVQAVIQYGKIVSWLEMEYGL--SEKESKASESFLLAAFLNLAMCYLKLRE   79 (168)
T ss_dssp             CGGGSCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTCCSC--CHHHHHHHHHHHHHHHHHHHHHHHHTTC
T ss_pred             CcccCCHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhcc--chhhhhhcchhHHHHHHhHHHHHHHhhh
Confidence            48999999999999999999999999999999999999999998775432  2334455667778899999999999999


Q ss_pred             HHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Q 017811          249 YEEAIGQCSLVLGEDENNVKALFRRGKARAELGQTDAAREDFLKAGKFAPEDKSIARELRLLAEHEKAVYKKQKEIYKGI  328 (365)
Q Consensus       249 ~~~A~~~~~~aL~~~p~n~ka~~~~g~a~~~l~~~~~A~~~l~~al~l~P~n~~~~~~l~~l~~~~~~~~~~~k~~y~km  328 (365)
                      |.+|+.+|+++|.++|+|+++||++|.+|..+|+|++|+.+|++++.++|+|+.+...+..+...+.++.+++++.|.+|
T Consensus        80 ~~~Ai~~~~~al~l~p~~~~a~~~~~~~~~~l~~~~~A~~~~~~al~l~P~n~~~~~~l~~~~~~~~~~~e~~kk~~~~~  159 (168)
T d1kt1a1          80 YTKAVECCDKALGLDSANEKGLYRRGEAQLLMNEFESAKGDFEKVLEVNPQNKAARLQIFMCQKKAKEHNERDRRTYANM  159 (168)
T ss_dssp             HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             cccchhhhhhhhhcccchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHhHHHHHHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             cCCCC
Q 017811          329 FGPRP  333 (365)
Q Consensus       329 f~~~~  333 (365)
                      |.+-.
T Consensus       160 f~~~~  164 (168)
T d1kt1a1         160 FKKFA  164 (168)
T ss_dssp             HHHHH
T ss_pred             Hhhhh
Confidence            97543

>d1r9ha_ d.26.1.1 (A:) FKB-6, N-terminal domain {Caenorhabditis elegans [TaxId: 6239]}

class: Alpha and beta proteins (a+b)
fold: FKBP-like
superfamily: FKBP-like
family: FKBP immunophilin/proline isomerase
domain: FKB-6, N-terminal domain
species: Caenorhabditis elegans [TaxId: 6239]

Probab=99.95  E-value=9e-28  Score=189.45  Aligned_cols=108  Identities=33%  Similarity=0.525  Sum_probs=102.3

Q ss_pred             CCCeEEEEEecCCCC-CCCCCCEEEEEEEEEEcCCCeeeccCcCCCCcceeecCCCCchhhhHHHHHhcCCcCcEEEEEe
Q 017811           51 HEKVTKQIIKEGHGQ-KPSKYSTCFLHYRAWAESTRHKFDDTWLEQQPLEMVLGKEKKEMTGLAIGVSSMKAGEHALLHV  129 (365)
Q Consensus        51 ~~gv~k~v~~~G~g~-~p~~g~~v~v~y~~~~~~~g~~fd~s~~~~~p~~f~lg~~~~~i~g~e~~l~~Mk~GE~~~~~i  129 (365)
                      ++||.|+|+++|+|. .|..||.|+|||++++.| |++||+|+.++.|++|.+|.+ ++|+||+++|.+|++||+++|.|
T Consensus         9 d~Gl~~~il~~G~G~~~p~~gd~V~v~y~~~l~d-G~v~dss~~~~~p~~f~~g~~-~vi~G~~~~l~~M~~Ge~~~~~i   86 (118)
T d1r9ha_           9 DGGVLKLIKKEGQGVVKPTTGTTVKVHYVGTLEN-GTKFDSSRDRGDQFSFNLGRG-NVIKGWDLGVATMTKGEVAEFTI   86 (118)
T ss_dssp             CSSEEEEEEECCBSSCCCCTTCEEEEEEEEEETT-SCEEEEHHHHTSCEEEETTTT-SSCHHHHHHHTTCCBTCEEEEEE
T ss_pred             CCCEEEEEEECcCCCCCCCCCCEEEEEEEEEEcC-CCEEEEccccceeeeeeccCc-ceeeeeeeeeeeecCCceEEEEE
Confidence            479999999999997 799999999999999988 899999998889999999999 89999999999999999999999


Q ss_pred             ccccccCCCCCCCCCCCCCCCcEEEEEEEEeee
Q 017811          130 GWELGYGKEGSFSFPNVSPMADLVYEVVLIGFD  162 (365)
Q Consensus       130 ~~~~~yg~~g~~~~~~ip~~~~l~~~iel~~~~  162 (365)
                      ||++|||+.|.  ++.|||+++|+|+|+|+++.
T Consensus        87 pp~laYG~~g~--~~~IPp~s~l~f~IeLl~f~  117 (118)
T d1r9ha_          87 RSDYGYGDAGS--PPKIPGGATLIFEVELFEWS  117 (118)
T ss_dssp             CGGGTTTTTCB--TTTBCTTCCEEEEEEEEEEE
T ss_pred             CHHHhCCcCCC--CCccCcCCcEEEEEEEEEEe
Confidence            99999999997  46899999999999999875

>d1p5qa1 a.118.8.1 (A:258-427) FKBP52 (FKBP4), C-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: FKBP52 (FKBP4), C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.95  E-value=8.8e-27  Score=196.51  Aligned_cols=162  Identities=29%  Similarity=0.464  Sum_probs=149.7

Q ss_pred             CCCCCHHHHHHHHHHhhhhhhhhhhhhhHHHHHHHHHHHHHhhccchhhhhhhhHHHHHHHhhchhhhHHHHHHHHhcCH
Q 017811          170 RSDMTVEERIGAADRRKMDGNALFKEEKLEEAMQQYEMAIAYMGDDFMFQLFGKYRDMALAVKNPCHLNMAACLLKLKRY  249 (365)
Q Consensus       170 ~~~~~~~e~~~~a~~~k~~G~~~~~~~~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~kl~~~  249 (365)
                      +|+|+.+++++.+..+++.|+.+|+.|+|.+|+..|++||.+++.....  ..........+...+|.|+|.||+++|+|
T Consensus         1 ~~~~~~~ek~~~a~~l~~~G~~~~~~~~~~~Ai~~y~~al~~~~~~~~~--~~~~~~~~~~~~~~~~~nla~~y~k~~~~   78 (170)
T d1p5qa1           1 SWEMNSEEKLEQSTIVKERGTVYFKEGKYKQALLQYKKIVSWLEYESSF--SNEEAQKAQALRLASHLNLAMCHLKLQAF   78 (170)
T ss_dssp             GGGCCHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCCCC--CSHHHHHHHHHHHHHHHHHHHHHHHTTCH
T ss_pred             CCCCCHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhhcccc--chHHHhhhchhHHHHHHHHHHHHHhhhhc
Confidence            4899999999999999999999999999999999999999999875432  23445556677788999999999999999


Q ss_pred             HHHHHHHHHHHhCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHHHHHHHHHHHHHhccc
Q 017811          250 EEAIGQCSLVLGEDENNVKALFRRGKARAELGQTDAAREDFLKAGKFAPEDKSIARELRLLAEHEKAVYKKQKEIYKGIF  329 (365)
Q Consensus       250 ~~A~~~~~~aL~~~p~n~ka~~~~g~a~~~l~~~~~A~~~l~~al~l~P~n~~~~~~l~~l~~~~~~~~~~~k~~y~kmf  329 (365)
                      ++|+.+|+++|.++|+++++|+++|.+|..+|+|++|+.+|+++++++|+|+.+...+..+..+++++.++++++|.+||
T Consensus        79 ~~A~~~~~~al~~~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~P~n~~~~~~l~~~~~~~~~~~~~e~~~~~~~f  158 (170)
T d1p5qa1          79 SAAIESCNKALELDSNNEKGLSRRGEAHLAVNDFELARADFQKVLQLYPNNKAAKTQLAVCQQRIRRQLAREKKLYANMF  158 (170)
T ss_dssp             HHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             ccccchhhhhhhccccchhhhHHHHHHHHHhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCC
Q 017811          330 GPRP  333 (365)
Q Consensus       330 ~~~~  333 (365)
                      +...
T Consensus       159 ~~~~  162 (170)
T d1p5qa1         159 ERLA  162 (170)
T ss_dssp             HHHH
T ss_pred             HHHh
Confidence            7544

>d1yata_ d.26.1.1 (A:) Calcineurin (FKBP12.6) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a+b)
fold: FKBP-like
superfamily: FKBP-like
family: FKBP immunophilin/proline isomerase
domain: Calcineurin (FKBP12.6)
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.94  E-value=6.3e-27  Score=183.47  Aligned_cols=110  Identities=26%  Similarity=0.440  Sum_probs=103.8

Q ss_pred             eeeCCCeEEEEEecCCCC-CCCCCCEEEEEEEEEEcCCCeeeccCcCCCCcceeecCCCCchhhhHHHHHhcCCcCcEEE
Q 017811           48 EVLHEKVTKQIIKEGHGQ-KPSKYSTCFLHYRAWAESTRHKFDDTWLEQQPLEMVLGKEKKEMTGLAIGVSSMKAGEHAL  126 (365)
Q Consensus        48 ~~~~~gv~k~v~~~G~g~-~p~~g~~v~v~y~~~~~~~g~~fd~s~~~~~p~~f~lg~~~~~i~g~e~~l~~Mk~GE~~~  126 (365)
                      +++++||+++++++|+|. .|+.||.|+|||++++.| |++||+++....|+.|.+|.+ ++|+||+++|.+|++||+++
T Consensus         2 ~~~d~gl~~~~l~~G~G~~~P~~gd~V~v~y~~~~~d-G~~~ds~~~~~~~~~~~~~~~-~~i~G~~~~l~~M~~G~~~~   79 (113)
T d1yata_           2 EVIEGNVKIDRISPGDGATFPKTGDLVTIHYTGTLEN-GQKFDSSVDRGSPFQCNIGVG-QVIKGWDVGIPKLSVGEKAR   79 (113)
T ss_dssp             EECGGGCEEEEEECCCSSCCCCTTCEEEEEEEEEETT-SCEEEESTTTTCCEEEETTSS-SSCHHHHHHGGGCCTTCEEE
T ss_pred             cCccCCcEEEEEECccCCcCCCCCCEEEEEEEEEEec-CcEEeccccCCceEeeeeccC-ceeeehhhhcccccCCCEEE
Confidence            467899999999999998 699999999999999988 899999998889999999999 89999999999999999999


Q ss_pred             EEeccccccCCCCCCCCCCCCCCCcEEEEEEEEee
Q 017811          127 LHVGWELGYGKEGSFSFPNVSPMADLVYEVVLIGF  161 (365)
Q Consensus       127 ~~i~~~~~yg~~g~~~~~~ip~~~~l~~~iel~~~  161 (365)
                      |.|||++|||+.|.  ++.|||+++|+|+|+|+++
T Consensus        80 ~~iP~~laYG~~g~--~~~IP~~s~Lif~ieLl~I  112 (113)
T d1yata_          80 LTIPGPYAYGPRGF--PGLIPPNSTLVFDVELLKV  112 (113)
T ss_dssp             EEECGGGTTTTTCB--TTTBCTTCCEEEEEEEEEE
T ss_pred             EEechHHeecCcCC--CCccCcCCeEEEEEEEEEe
Confidence            99999999999997  4679999999999999987

>d1kt1a2 d.26.1.1 (A:28-138) FKBP51, N-terminal domains {Monkey (Saimiri boliviensis) [TaxId: 27679]}

class: Alpha and beta proteins (a+b)
fold: FKBP-like
superfamily: FKBP-like
family: FKBP immunophilin/proline isomerase
domain: FKBP51, N-terminal domains
species: Monkey (Saimiri boliviensis) [TaxId: 27679]

Probab=99.94  E-value=6e-28  Score=188.56  Aligned_cols=109  Identities=31%  Similarity=0.534  Sum_probs=83.6

Q ss_pred             eCCCeEEEEEecCCCC-CCCCCCEEEEEEEEEEcCCCeeeccCcCCCCcceeecCCCCchhhhHHHHHhcCCcCcEEEEE
Q 017811           50 LHEKVTKQIIKEGHGQ-KPSKYSTCFLHYRAWAESTRHKFDDTWLEQQPLEMVLGKEKKEMTGLAIGVSSMKAGEHALLH  128 (365)
Q Consensus        50 ~~~gv~k~v~~~G~g~-~p~~g~~v~v~y~~~~~~~g~~fd~s~~~~~p~~f~lg~~~~~i~g~e~~l~~Mk~GE~~~~~  128 (365)
                      .++||.|+++++|.|. .|..||.|+|||++++.| |++||+|+..+.|++|.+|.+ ++|+||+++|.+|++||+++|.
T Consensus         2 ~d~Gi~~~i~~~G~g~~~P~~gd~V~v~y~~~l~d-G~~~dss~~~~~p~~f~lg~~-~~i~G~~~~l~~M~~Ge~~~~~   79 (111)
T d1kt1a2           2 KDRGVLKIVKRVGHGEETPMIGDRVYVHYNGKLAN-GKKFDSSHDRNEPFVFSIGKG-QVIKAWDIGVATMKKGEICHLL   79 (111)
T ss_dssp             CSCSCEEEC----CCSCCCCTTCEEEEECCCCSCC-------------CEEEETTSS-SSCHHHHHSTTTCCTTCCEEEE
T ss_pred             CCCCeEEEEEEcccCCcCCCCCCEEEEEEEEEECC-CCEEEEEEecceeeeeecCCC-cEEeeeeeeehhccCCcEEEEE
Confidence            4589999999999997 799999999999999887 899999998889999999999 8999999999999999999999


Q ss_pred             eccccccCCCCCCCCCCCCCCCcEEEEEEEEeee
Q 017811          129 VGWELGYGKEGSFSFPNVSPMADLVYEVVLIGFD  162 (365)
Q Consensus       129 i~~~~~yg~~g~~~~~~ip~~~~l~~~iel~~~~  162 (365)
                      |||++|||+.|.  .+.||||++|+|+|+|++++
T Consensus        80 ip~~layG~~g~--~~~IPp~s~lif~ieLl~ik  111 (111)
T d1kt1a2          80 CKPEYAYGATGS--LPKIPSNATLFFEVELLDFK  111 (111)
T ss_dssp             C----CCCTTTC--TTTSCTTCCCEEEEEEEEEE
T ss_pred             ECHHHhCCCCCC--CCcCCcCCeEEEEEEEEEEC
Confidence            999999999987  46899999999999999874

>d2ppna1 d.26.1.1 (A:1-107) FK-506 binding protein (FKBP12), an immunophilin {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: FKBP-like
superfamily: FKBP-like
family: FKBP immunophilin/proline isomerase
domain: FK-506 binding protein (FKBP12), an immunophilin
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.94  E-value=4.5e-27  Score=182.42  Aligned_cols=106  Identities=31%  Similarity=0.583  Sum_probs=100.4

Q ss_pred             CeEEEEEecCCCC-CCCCCCEEEEEEEEEEcCCCeeeccCcCCCCcceeecCCCCchhhhHHHHHhcCCcCcEEEEEecc
Q 017811           53 KVTKQIIKEGHGQ-KPSKYSTCFLHYRAWAESTRHKFDDTWLEQQPLEMVLGKEKKEMTGLAIGVSSMKAGEHALLHVGW  131 (365)
Q Consensus        53 gv~k~v~~~G~g~-~p~~g~~v~v~y~~~~~~~g~~fd~s~~~~~p~~f~lg~~~~~i~g~e~~l~~Mk~GE~~~~~i~~  131 (365)
                      ||+|+++++|+|. .|..||.|+|||++++.| |++||+|+.++.|++|.+|.+ ++|+||+.+|.+|++||+++|.|||
T Consensus         1 Gv~~~~l~~G~G~~~p~~gd~V~v~y~g~l~d-G~~~d~s~~~~~p~~~~~g~~-~~i~G~~~~l~~M~~Ge~~~~~ip~   78 (107)
T d2ppna1           1 GVQVETISPGDGRTFPKRGQTCVVHYTGMLED-GKKFDSSRDRNKPFKFMLGKQ-EVIRGWEEGVAQMSVGQRAKLTISP   78 (107)
T ss_dssp             CEEEEEEECCCSSCCCCTTCEEEEEEEEEETT-SCEEEEHHHHTSCEEEETTSC-CSCHHHHHHHTTCCTTCEEEEEECG
T ss_pred             CcEEEEEECcCCccCCCCCCEEEEEEEEEecC-CeEEEeeeccceeeeEeeCcc-hhheeehhhhcCccCCCEEEEEECH
Confidence            7999999999998 699999999999999987 899999998889999999998 8999999999999999999999999


Q ss_pred             ccccCCCCCCCCCCCCCCCcEEEEEEEEeee
Q 017811          132 ELGYGKEGSFSFPNVSPMADLVYEVVLIGFD  162 (365)
Q Consensus       132 ~~~yg~~g~~~~~~ip~~~~l~~~iel~~~~  162 (365)
                      ++|||+.|.  ++.||||++|+|+|+|++++
T Consensus        79 ~laYG~~g~--~~~IPp~s~lif~ieL~~vk  107 (107)
T d2ppna1          79 DYAYGATGH--PGIIPPHATLVFDVELLKLE  107 (107)
T ss_dssp             GGTTTTTCB--TTTBCTTCCEEEEEEEEEEC
T ss_pred             HHhCCCCCC--CCCCCcCCeEEEEEEEEEEC
Confidence            999999987  46799999999999999874

>d1fd9a_ d.26.1.1 (A:) Macrophage infectivity potentiator protein (MIP) {Legionella pneumophila [TaxId: 446]}

class: Alpha and beta proteins (a+b)
fold: FKBP-like
superfamily: FKBP-like
family: FKBP immunophilin/proline isomerase
domain: Macrophage infectivity potentiator protein (MIP)
species: Legionella pneumophila [TaxId: 446]

Probab=99.94  E-value=4.6e-27  Score=203.38  Aligned_cols=112  Identities=24%  Similarity=0.347  Sum_probs=106.3

Q ss_pred             ceeeeCCCeEEEEEecCCCCCCCCCCEEEEEEEEEEcCCCeeeccCcCCCCcceeecCCCCchhhhHHHHHhcCCcCcEE
Q 017811           46 EVEVLHEKVTKQIIKEGHGQKPSKYSTCFLHYRAWAESTRHKFDDTWLEQQPLEMVLGKEKKEMTGLAIGVSSMKAGEHA  125 (365)
Q Consensus        46 ~~~~~~~gv~k~v~~~G~g~~p~~g~~v~v~y~~~~~~~g~~fd~s~~~~~p~~f~lg~~~~~i~g~e~~l~~Mk~GE~~  125 (365)
                      .+.++++||+|+|+++|+|..|..||.|+|||++++.| |++||+|+.++.|++|.+|   ++|+||+++|.+|++|+++
T Consensus        92 ~v~~~~sGl~y~v~~~G~G~~p~~~d~v~v~y~g~l~d-g~~f~~s~~~~~p~~~~~~---~~i~G~~e~l~~m~~G~~~  167 (204)
T d1fd9a_          92 GVVVLPSGLQYKVINSGNGVKPGKSDTVTVEYTGRLID-GTVFDSTEKTGKPATFQVS---QVIPGWTEALQLMPAGSTW  167 (204)
T ss_dssp             TEEECTTSCEEEEEECCCSCCCCTTCEEEEEEEEEETT-SCEEEEHHHHCSCEEEEGG---GSCHHHHHHHTTCCTTCEE
T ss_pred             ceEEecCccEEEEeecCCCcccCCCCEEEEEEEEEECC-CCEecccccCCCCceecCC---ccchhHHHHhcCCCCCCEE
Confidence            47888999999999999999999999999999999998 8999999988999999988   6899999999999999999


Q ss_pred             EEEeccccccCCCCCCCCCCCCCCCcEEEEEEEEeeec
Q 017811          126 LLHVGWELGYGKEGSFSFPNVSPMADLVYEVVLIGFDE  163 (365)
Q Consensus       126 ~~~i~~~~~yg~~g~~~~~~ip~~~~l~~~iel~~~~~  163 (365)
                      +|+|||++|||+.|.  ++.||||++|+|+|+|+++.+
T Consensus       168 ~~~iP~~laYG~~g~--~~~Ipp~s~l~feveL~~i~k  203 (204)
T d1fd9a_         168 EIYVPSGLAYGPRSV--GGPIGPNETLIFKIHLISVKK  203 (204)
T ss_dssp             EEEECGGGTTTTCCC--SSSCCTTCCEEEEEEEEEEEC
T ss_pred             EEEEChHHCcCCCCC--CCCcCcCCcEEEEEEEEEEEc
Confidence            999999999999997  467999999999999999875

>d1q6ha_ d.26.1.1 (A:) Peptidyl-prolyl cis-trans isomerase FkpA {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a+b)
fold: FKBP-like
superfamily: FKBP-like
family: FKBP immunophilin/proline isomerase
domain: Peptidyl-prolyl cis-trans isomerase FkpA
species: Escherichia coli [TaxId: 562]

Probab=99.94  E-value=1.2e-26  Score=201.47  Aligned_cols=110  Identities=26%  Similarity=0.519  Sum_probs=104.8

Q ss_pred             ceeeeCCCeEEEEEecCCCCCCCCCCEEEEEEEEEEcCCCeeeccCcCCCCcceeecCCCCchhhhHHHHHhcCCcCcEE
Q 017811           46 EVEVLHEKVTKQIIKEGHGQKPSKYSTCFLHYRAWAESTRHKFDDTWLEQQPLEMVLGKEKKEMTGLAIGVSSMKAGEHA  125 (365)
Q Consensus        46 ~~~~~~~gv~k~v~~~G~g~~p~~g~~v~v~y~~~~~~~g~~fd~s~~~~~p~~f~lg~~~~~i~g~e~~l~~Mk~GE~~  125 (365)
                      .+..+++||+|+|+++|+|..|..||.|+|||++++.| |++||+|+.++.|+.|.+|   ++|+||+++|.+|++|+++
T Consensus       101 ~v~~~~sGl~y~v~~~G~G~~p~~gd~v~v~y~g~l~d-G~~fd~s~~~~~p~~~~~~---~vi~g~~e~l~~m~~G~k~  176 (210)
T d1q6ha_         101 GVKTSSTGLVYQVVEAGKGEAPKDSDTVVVNYKGTLID-GKEFDNSYTRGEPLSFRLD---GVIPGWTEGLKNIKKGGKI  176 (210)
T ss_dssp             TEEECTTSCEEEEEECCSSCCCCTTCEEEEEEEEEETT-SCEEEEGGGGTSCEEEEGG---GSCHHHHHHGGGSCTTCEE
T ss_pred             ceEEccCceEEEEeeCCCCCCCCCCceEEEEEEEEEcC-CCEEeecccCCCcceeccC---ccchhHHHHHhhccCCCEE
Confidence            47889999999999999999999999999999999998 9999999999999999998   7899999999999999999


Q ss_pred             EEEeccccccCCCCCCCCCCCCCCCcEEEEEEEEeee
Q 017811          126 LLHVGWELGYGKEGSFSFPNVSPMADLVYEVVLIGFD  162 (365)
Q Consensus       126 ~~~i~~~~~yg~~g~~~~~~ip~~~~l~~~iel~~~~  162 (365)
                      +|+|||++|||+.|.   +.||||++|+|+|+|++++
T Consensus       177 ~~~iP~~laYG~~g~---~~Ippns~Lvfevel~~ik  210 (210)
T d1q6ha_         177 KLVIPPELAYGKAGV---PGIPPNSTLVFDVELLDVK  210 (210)
T ss_dssp             EEEECGGGTTTTTCB---TTBCTTCCEEEEEEEEEEC
T ss_pred             EEEECHHHCcCCCCC---CCCCcCCcEEEEEEEEEEC
Confidence            999999999999996   5699999999999999874

>d1pbka_ d.26.1.1 (A:) FKBP25 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: FKBP-like
superfamily: FKBP-like
family: FKBP immunophilin/proline isomerase
domain: FKBP25
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.93  E-value=1.3e-25  Score=176.75  Aligned_cols=107  Identities=30%  Similarity=0.446  Sum_probs=97.7

Q ss_pred             CeEEEEEecCCCC-CCCCCCEEEEEEEEEEcCCCeeeccCcC-------CCCcceeecCCCCchhhhHHHHHhcCCcCcE
Q 017811           53 KVTKQIIKEGHGQ-KPSKYSTCFLHYRAWAESTRHKFDDTWL-------EQQPLEMVLGKEKKEMTGLAIGVSSMKAGEH  124 (365)
Q Consensus        53 gv~k~v~~~G~g~-~p~~g~~v~v~y~~~~~~~g~~fd~s~~-------~~~p~~f~lg~~~~~i~g~e~~l~~Mk~GE~  124 (365)
                      .+.|+|+++|+|. .|..||.|+|||++++.| |++||+|+.       ..+|+.|.+|++ ++|+||+++|.+|++||+
T Consensus         2 ~~~k~vl~~G~G~~~P~~gd~V~v~y~~~l~d-G~~fdss~~~~~~~~~~~~p~~f~lg~~-~~i~Gl~~~v~~M~~Ge~   79 (116)
T d1pbka_           2 KYTKSVLKKGDKTNFPKKGDVVHCWYTGTLQD-GTVFDTNIQTSAKKKKNAKPLSFKVGVG-KVIRGWDEALLTMSKGEK   79 (116)
T ss_dssp             CEEEEEEECCCSSCCCCTTCEEEEEEEEECTT-SCEEEECCCSSCCTTTSSCCEEEETTTT-SSCHHHHHHHTTCCTTCE
T ss_pred             cceEEEEecCCCCCCCCCCCEEEEEEEEEECC-CCEeecccccccccccCCCceeeeeccc-ccccchheechhhcCCcE
Confidence            5789999999997 799999999999999998 899998864       346999999999 899999999999999999


Q ss_pred             EEEEeccccccCCCCCCCCCCCCCCCcEEEEEEEEeee
Q 017811          125 ALLHVGWELGYGKEGSFSFPNVSPMADLVYEVVLIGFD  162 (365)
Q Consensus       125 ~~~~i~~~~~yg~~g~~~~~~ip~~~~l~~~iel~~~~  162 (365)
                      +.|.|||++|||+.|.. ...|||+++|+|+|+|++++
T Consensus        80 ~~~~ip~~~ayG~~g~~-~~~Ipp~s~L~feieLl~ve  116 (116)
T d1pbka_          80 ARLEIEPEWAYGKKGQP-DAKIPPNAKLTFEVELVDID  116 (116)
T ss_dssp             EEEEECGGGTTTTTCBG-GGTBCTTCCEEEEEEEEEEC
T ss_pred             EEEEECHHHhCCccCCC-CCCcCcCCeEEEEEEEEEEC
Confidence            99999999999998873 24699999999999999874

>d2fbna1 a.118.8.1 (A:22-174) Putative 70 kda peptidylprolyl isomerase PFL2275c {Plasmodium falciparum [TaxId: 5833]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Putative 70 kda peptidylprolyl isomerase PFL2275c
species: Plasmodium falciparum [TaxId: 5833]

Probab=99.93  E-value=8.2e-25  Score=181.04  Aligned_cols=149  Identities=32%  Similarity=0.450  Sum_probs=132.9

Q ss_pred             ccCCCCCHHHHHHHHHHhhhhhhhhhhhhhHHHHHHHHHHHHHhhccchhhhhhhhHHHHHHHhhchhhhHHHHHHHHhc
Q 017811          168 KARSDMTVEERIGAADRRKMDGNALFKEEKLEEAMQQYEMAIAYMGDDFMFQLFGKYRDMALAVKNPCHLNMAACLLKLK  247 (365)
Q Consensus       168 ~~~~~~~~~e~~~~a~~~k~~G~~~~~~~~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~kl~  247 (365)
                      +..|+|+.+++++.|..++..|+.+|+.|+|.+|+..|++||.+.+...... ..........+...+|+|+|.||++++
T Consensus         3 ~~~~~~~~~e~~~~a~~~~~~G~~~f~~~~y~~A~~~Y~~al~~~~~~~~~~-~~~~~~~~~~~~~~~~~Nla~~~~~l~   81 (153)
T d2fbna1           3 KSIYDYTDEEKVQSAFDIKEEGNEFFKKNEINEAIVKYKEALDFFIHTEEWD-DQILLDKKKNIEISCNLNLATCYNKNK   81 (153)
T ss_dssp             CSGGGCCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCTTCC-CHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred             cchhhCCHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcchhhhh-hHHHHHhhhhHHHHHHhhHHHHHHHhc
Confidence            3489999999999999999999999999999999999999999987654321 122233445566788999999999999


Q ss_pred             CHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHHHHH
Q 017811          248 RYEEAIGQCSLVLGEDENNVKALFRRGKARAELGQTDAAREDFLKAGKFAPEDKSIARELRLLAEHEKAV  317 (365)
Q Consensus       248 ~~~~A~~~~~~aL~~~p~n~ka~~~~g~a~~~l~~~~~A~~~l~~al~l~P~n~~~~~~l~~l~~~~~~~  317 (365)
                      +|++|+.+|+++|+++|.|+++||++|.+|..+|+|++|+.+|+++++++|+|..+...+..+..++++.
T Consensus        82 ~~~~Al~~~~~al~~~p~~~ka~~~~g~~~~~lg~~~~A~~~~~~al~l~P~n~~~~~~l~~~~~kl~~~  151 (153)
T d2fbna1          82 DYPKAIDHASKVLKIDKNNVKALYKLGVANMYFGFLEEAKENLYKAASLNPNNLDIRNSYELCVNKLKEA  151 (153)
T ss_dssp             CHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHH
T ss_pred             ccchhhhhhhccccccchhhhhhHHhHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHH
Confidence            9999999999999999999999999999999999999999999999999999999999999988777654

>d1jvwa_ d.26.1.1 (A:) Macrophage infectivity potentiator protein (MIP) {Trypanosoma cruzi [TaxId: 5693]}

class: Alpha and beta proteins (a+b)
fold: FKBP-like
superfamily: FKBP-like
family: FKBP immunophilin/proline isomerase
domain: Macrophage infectivity potentiator protein (MIP)
species: Trypanosoma cruzi [TaxId: 5693]

Probab=99.92  E-value=6.1e-25  Score=182.20  Aligned_cols=114  Identities=22%  Similarity=0.390  Sum_probs=102.8

Q ss_pred             ceeeeCCCeEEEEEecCCCC-CCCCCCEEEEEEEEEEcCCCeeeccCcCCCCcceeecCCCCchhhhHHHHHhcCCcCcE
Q 017811           46 EVEVLHEKVTKQIIKEGHGQ-KPSKYSTCFLHYRAWAESTRHKFDDTWLEQQPLEMVLGKEKKEMTGLAIGVSSMKAGEH  124 (365)
Q Consensus        46 ~~~~~~~gv~k~v~~~G~g~-~p~~g~~v~v~y~~~~~~~g~~fd~s~~~~~p~~f~lg~~~~~i~g~e~~l~~Mk~GE~  124 (365)
                      .+..+++||+|+|+++|.|. .|..||.|+|||++++.| |++||++.....|+.+.++   ++|+||+++|.+|++||+
T Consensus        28 ~~~~~~sGl~y~il~~G~G~~~P~~gd~V~v~Y~g~l~d-G~~fds~~~~~~p~~~~~~---~~i~G~~e~l~~M~~Ge~  103 (160)
T d1jvwa_          28 DAVKLPSGLVFQRIARGSGKRAPAIDDKCEVHYTGRLRD-GTVFDSSRERGKPTTFRPN---EVIKGWTEALQLMREGDR  103 (160)
T ss_dssp             TEEECTTSCEEEEEECCCCSBCCCTTCCEEEEEEEECTT-SCEEEEHHHHTSCEEECGG---GSCHHHHHHHTTCCTTCE
T ss_pred             CCEECCCCCEEEEEECcccccCCCCCcceEEEEEEEEcc-CCeeeeeccccCccccCcc---ccchhHHHHhcCccccce
Confidence            36778999999999999998 799999999999999987 9999998877777665554   789999999999999999


Q ss_pred             EEEEeccccccCCCCCCCCCCCCCCCcEEEEEEEEeeecCc
Q 017811          125 ALLHVGWELGYGKEGSFSFPNVSPMADLVYEVVLIGFDETK  165 (365)
Q Consensus       125 ~~~~i~~~~~yg~~g~~~~~~ip~~~~l~~~iel~~~~~~~  165 (365)
                      ++|+|||++|||..|.  .+.||||++|+|+|+|+++.+..
T Consensus       104 ~~v~iPp~laYG~~g~--~~~IPp~s~LifeIeLl~i~~~~  142 (160)
T d1jvwa_         104 WRLFIPYDLAYGVTGG--GGMIPPYSPLEFDVELISIKDGG  142 (160)
T ss_dssp             EEEEECGGGTTTTTCS--SSSSCTTCCEEEEEEEEEEGGGC
T ss_pred             eEEEeCHHHCcCCCCC--CCCcCcCCcEEEEEEEEEEecCC
Confidence            9999999999999987  46799999999999999997654

>d1u79a_ d.26.1.1 (A:) FKBP13 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a+b)
fold: FKBP-like
superfamily: FKBP-like
family: FKBP immunophilin/proline isomerase
domain: FKBP13
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=99.91  E-value=5.7e-25  Score=175.48  Aligned_cols=113  Identities=23%  Similarity=0.309  Sum_probs=102.9

Q ss_pred             eeeeCCCeEEEEEecCCCCCCCCCCEEEEEEEEEEcCCCeeeccCcCCCCcceeecCCCCchhhhHHHHHh------cCC
Q 017811           47 VEVLHEKVTKQIIKEGHGQKPSKYSTCFLHYRAWAESTRHKFDDTWLEQQPLEMVLGKEKKEMTGLAIGVS------SMK  120 (365)
Q Consensus        47 ~~~~~~gv~k~v~~~G~g~~p~~g~~v~v~y~~~~~~~g~~fd~s~~~~~p~~f~lg~~~~~i~g~e~~l~------~Mk  120 (365)
                      +.++++||+++++++|+|..|+.||.|+|||++++.+ |++||+|+..+.|+.|.+|.+ .+|+||+.++.      .|+
T Consensus         3 ~~~~psGl~y~~~~~G~G~~p~~gd~V~v~y~g~l~~-G~~fdss~~~~~p~~~~~g~~-~~i~g~~~~i~g~~~l~~M~   80 (125)
T d1u79a_           3 FSVSPSGLAFCDKVVGYGPEAVKGQLIKAHYVGKLEN-GKVFDSSYNRGKPLTFRIGVG-EVIKGWDQGILGSDGIPPML   80 (125)
T ss_dssp             CEECTTSCEEEEEECCSSCBCCTTCEEEEEEEEECTT-SCEEEEHHHHTSCEEEETTSS-SSCHHHHHHHHCBTTBCCCB
T ss_pred             cEECCCCCEEEEEEeccCCCCCCCCEEEEEEEeeecC-CcEEecccccCcceeEecCcc-ccccchhhhccchhhccccc
Confidence            5788999999999999999999999999999999987 899999998889999999999 89999999885      499


Q ss_pred             cCcEEEEEeccccccCCCCCC---CCCCCCCCCcEEEEEEEEee
Q 017811          121 AGEHALLHVGWELGYGKEGSF---SFPNVSPMADLVYEVVLIGF  161 (365)
Q Consensus       121 ~GE~~~~~i~~~~~yg~~g~~---~~~~ip~~~~l~~~iel~~~  161 (365)
                      +||+++|.|||++|||+.|..   ..+.||||++|+|+|+|+.+
T Consensus        81 ~G~k~~v~iP~~laYG~~G~~~~~~~~~IPp~s~LifeieLl~~  124 (125)
T d1u79a_          81 TGGKRTLRIPPELAYGDRGAGCKGGSCLIPPASVLLFDIEYIGK  124 (125)
T ss_dssp             TTCEEEEEECGGGTTGGGCEEEETTEEEECTTCCEEEEEEEEEE
T ss_pred             CCCEEEEEECHHHCCCCCCcCCcCCCCcCCcCCeEEEEEEEEEe
Confidence            999999999999999998742   12459999999999999865

>d1kt1a3 d.26.1.1 (A:139-253) FKBP51, N-terminal domains {Monkey (Saimiri boliviensis) [TaxId: 27679]}

class: Alpha and beta proteins (a+b)
fold: FKBP-like
superfamily: FKBP-like
family: FKBP immunophilin/proline isomerase
domain: FKBP51, N-terminal domains
species: Monkey (Saimiri boliviensis) [TaxId: 27679]

Probab=99.89  E-value=1.9e-23  Score=164.16  Aligned_cols=106  Identities=23%  Similarity=0.448  Sum_probs=92.0

Q ss_pred             eCCCeEEEEEecCCCC-CCCCCCEEEEEEEEEEcCCCeeeccCcCCCCcceeecCCC--CchhhhHHHHHhcCCcCcEEE
Q 017811           50 LHEKVTKQIIKEGHGQ-KPSKYSTCFLHYRAWAESTRHKFDDTWLEQQPLEMVLGKE--KKEMTGLAIGVSSMKAGEHAL  126 (365)
Q Consensus        50 ~~~gv~k~v~~~G~g~-~p~~g~~v~v~y~~~~~~~g~~fd~s~~~~~p~~f~lg~~--~~~i~g~e~~l~~Mk~GE~~~  126 (365)
                      .++||.|+|+++|+|. .|..||.|+|||++++ + |++|+++     +..|.++.+  ..+|+||+.+|.+|++||+++
T Consensus         6 ~D~gi~k~il~~G~G~~~p~~gd~V~v~y~g~~-~-g~~~~~~-----~~~~~~~~~~~~~vi~G~~~~l~~M~~Ge~~~   78 (115)
T d1kt1a3           6 EDGGIIRRTKRRGEGYSNPNEGARVQIHLEGRC-G-GRVFDCR-----DVAFTVGEGEDHDIPIGIDKALEKMQREEQCI   78 (115)
T ss_dssp             SSSSEEEEEEECCCCSSCCCTTCEEEEEEEEEE-T-TEEEEEE-----EEEEETTCGGGGTCCHHHHHHHTTCCTTCEEE
T ss_pred             cCCCEEEEEEEeecCCCCCCCCCEEEEEEEEEe-C-Ccccccc-----ccCceeeeccccccCchhHhhhccchhhceeE
Confidence            4789999999999996 9999999999999997 3 7888764     455666542  258999999999999999999


Q ss_pred             EEeccccccCCCCCCCCCCCCCCCcEEEEEEEEeeec
Q 017811          127 LHVGWELGYGKEGSFSFPNVSPMADLVYEVVLIGFDE  163 (365)
Q Consensus       127 ~~i~~~~~yg~~g~~~~~~ip~~~~l~~~iel~~~~~  163 (365)
                      |+|||.+|||+.|.. +..||||++|+|+|+|+++++
T Consensus        79 v~ip~~~ayG~~g~~-~~~Ipp~a~l~f~ieLl~~~k  114 (115)
T d1kt1a3          79 LHLGPRYGFGEAGKP-KFGIEPNAELIYEVTLKSFEK  114 (115)
T ss_dssp             EEECGGGSSCTTCBT-TTTBCTTCCEEEEEEEEEEEC
T ss_pred             EEeCHHHCcCCCCCC-CCCcCcCCeEEEEEEEEEEEe
Confidence            999999999999873 236999999999999999976

>d1ihga1 a.118.8.1 (A:197-365) Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Cyclophilin 40
species: Cow (Bos taurus) [TaxId: 9913]

Probab=99.88  E-value=5.3e-22  Score=166.44  Aligned_cols=153  Identities=31%  Similarity=0.416  Sum_probs=132.4

Q ss_pred             CCCHHHHHHHHHHhhhhhhhhhhhhhHHHHHHHHHHHHHhhccchhhhhhhhHHHHHHHhhchhhhHHHHHHHHhcCHHH
Q 017811          172 DMTVEERIGAADRRKMDGNALFKEEKLEEAMQQYEMAIAYMGDDFMFQLFGKYRDMALAVKNPCHLNMAACLLKLKRYEE  251 (365)
Q Consensus       172 ~~~~~e~~~~a~~~k~~G~~~~~~~~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~kl~~~~~  251 (365)
                      -...+..+..+..++..|+.+++.|+|..|+..|++||.+.+....... .............+++|||.||+++|+|++
T Consensus        17 l~~~~~~~~~a~~~~~~~~~~~~~~~y~~Ai~~y~~al~~~~~~~~~~~-~~~~~~~~~~~~~~~~nla~~~~~~~~~~~   95 (169)
T d1ihga1          17 LKDVDKILLISEDLKNIGNTFFKSQNWEMAIKKYTKVLRYVEGSRAAAE-DADGAKLQPVALSCVLNIGACKLKMSDWQG   95 (169)
T ss_dssp             TTCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHSC-HHHHGGGHHHHHHHHHHHHHHHHHTTCHHH
T ss_pred             HhhHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhhhhhhhh-hHHHHHhChhhHHHHHHHHHHHHhhcccch
Confidence            3456778889999999999999999999999999999998765432211 111122344566789999999999999999


Q ss_pred             HHHHHHHHHhCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHHHHHHHHHHHHH
Q 017811          252 AIGQCSLVLGEDENNVKALFRRGKARAELGQTDAAREDFLKAGKFAPEDKSIARELRLLAEHEKAVYKKQKEIY  325 (365)
Q Consensus       252 A~~~~~~aL~~~p~n~ka~~~~g~a~~~l~~~~~A~~~l~~al~l~P~n~~~~~~l~~l~~~~~~~~~~~k~~y  325 (365)
                      |+.+|++||+++|+++++|+++|.+|..+|+|++|+.+|+++++++|+|..+...+..|...++++.+++|+.|
T Consensus        96 Ai~~~~~al~~~p~~~~a~~~~g~~~~~l~~~~~A~~~~~~al~l~p~n~~~~~~l~~~~~~l~~~~~~~k~~y  169 (169)
T d1ihga1          96 AVDSCLEALEIDPSNTKALYRRAQGWQGLKEYDQALADLKKAQEIAPEDKAIQAELLKVKQKIKAQKDKEKAAY  169 (169)
T ss_dssp             HHHHHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHHHHCCC
T ss_pred             hhhhhhhhhhhhhhhhhHHHhHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence            99999999999999999999999999999999999999999999999999999999999999999888887644

>d1q1ca2 d.26.1.1 (A:141-257) FKBP52, N-terminal domains {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: FKBP-like
superfamily: FKBP-like
family: FKBP immunophilin/proline isomerase
domain: FKBP52, N-terminal domains
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.87  E-value=2e-22  Score=158.67  Aligned_cols=107  Identities=23%  Similarity=0.413  Sum_probs=90.5

Q ss_pred             CCCeEEEEEecCCCC-CCCCCCEEEEEEEEEEcCCCeeeccCcCCCCcceeecCCC--CchhhhHHHHHhcCCcCcEEEE
Q 017811           51 HEKVTKQIIKEGHGQ-KPSKYSTCFLHYRAWAESTRHKFDDTWLEQQPLEMVLGKE--KKEMTGLAIGVSSMKAGEHALL  127 (365)
Q Consensus        51 ~~gv~k~v~~~G~g~-~p~~g~~v~v~y~~~~~~~g~~fd~s~~~~~p~~f~lg~~--~~~i~g~e~~l~~Mk~GE~~~~  127 (365)
                      ++||.|+|+++|.|. .|..||.|+|||++++.+ | .|+++     +..|..+.+  .++|+||+.+|.+|++||+++|
T Consensus         7 D~gi~~~il~~G~G~~~p~~gd~V~v~y~g~~~~-~-~~~~~-----~~~~~~~~~~~~~~i~Gl~~~l~~M~~Ge~~~i   79 (117)
T d1q1ca2           7 DGGIIRRIQTRGEGYAKPNEGAIVEVALEGYYKD-K-LFDQR-----ELRFEIGEGENLDLPYGLERAIQRMEKGEHSIV   79 (117)
T ss_dssp             SSSEEEEEEECCSCSCCCCTTCEEEEEEEEEETT-E-EEEEE-----EEEEETTCGGGGTCCHHHHHHHTTCCTTCEEEE
T ss_pred             CCCEEEEEEeeecCCCCCCCCCEEEEEEEEEeCC-C-cEeec-----cccceeeecceeeeCcHHHHhhhcchhhCeEEE
Confidence            579999999999996 899999999999999865 4 56654     334444332  1589999999999999999999


Q ss_pred             EeccccccCCCCCCCCCCCCCCCcEEEEEEEEeeecCc
Q 017811          128 HVGWELGYGKEGSFSFPNVSPMADLVYEVVLIGFDETK  165 (365)
Q Consensus       128 ~i~~~~~yg~~g~~~~~~ip~~~~l~~~iel~~~~~~~  165 (365)
                      .|||++|||..|.. ...|||+++|+|+|+|+++.+.+
T Consensus        80 ~ip~~~ayG~~g~~-~~~Ipp~s~l~f~veL~~~~~~k  116 (117)
T d1q1ca2          80 YLKPSYAFGSVGKE-KFQIPPNAELKYELHLKSFEKAK  116 (117)
T ss_dssp             EECGGGTTTTTCBG-GGTBCTTCCEEEEEEEEEEECCC
T ss_pred             EECHHHhCcccCCC-CCccCcCCeEEEEEEEEEEEeCC
Confidence            99999999999873 24799999999999999998765

>d1elwa_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Hop
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.85  E-value=7.3e-21  Score=149.68  Aligned_cols=115  Identities=17%  Similarity=0.198  Sum_probs=109.2

Q ss_pred             HHHHhhhhhhhhhhhhhHHHHHHHHHHHHHhhccchhhhhhhhHHHHHHHhhchhhhHHHHHHHHhcCHHHHHHHHHHHH
Q 017811          181 AADRRKMDGNALFKEEKLEEAMQQYEMAIAYMGDDFMFQLFGKYRDMALAVKNPCHLNMAACLLKLKRYEEAIGQCSLVL  260 (365)
Q Consensus       181 ~a~~~k~~G~~~~~~~~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~kl~~~~~A~~~~~~aL  260 (365)
                      .+..++..|+.+++.|+|++|+..|++||.+.|.+..                 +|+++|.||.++|+|.+|+.+|.+++
T Consensus         2 ~~~~l~~~g~~~~~~g~~~eAi~~~~~al~~~p~~~~-----------------~~~~~a~~~~~~~~~~~A~~~~~~al   64 (117)
T d1elwa_           2 QVNELKEKGNKALSVGNIDDALQCYSEAIKLDPHNHV-----------------LYSNRSAAYAKKGDYQKAYEDGCKTV   64 (117)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHH-----------------HHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCcchh-----------------hhhcccccccccccccccchhhhhHH
Confidence            4677899999999999999999999999999998754                 49999999999999999999999999


Q ss_pred             hCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHH
Q 017811          261 GEDENNVKALFRRGKARAELGQTDAAREDFLKAGKFAPEDKSIARELRLLAE  312 (365)
Q Consensus       261 ~~~p~n~ka~~~~g~a~~~l~~~~~A~~~l~~al~l~P~n~~~~~~l~~l~~  312 (365)
                      +++|+++.+|+++|.++..+|+|++|+..|+++++++|+++.+...++.++.
T Consensus        65 ~~~p~~~~~~~~~g~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~l~~  116 (117)
T d1elwa_          65 DLKPDWGKGYSRKAAALEFLNRFEEAKRTYEEGLKHEANNPQLKEGLQNMEA  116 (117)
T ss_dssp             HHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHH
T ss_pred             HhccchhhHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHhC
Confidence            9999999999999999999999999999999999999999999999988753

>d1a17a_ a.118.8.1 (A:) Protein phosphatase 5 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Protein phosphatase 5
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.84  E-value=4.9e-20  Score=152.62  Aligned_cols=122  Identities=23%  Similarity=0.322  Sum_probs=114.5

Q ss_pred             HHHHHHHHHhhhhhhhhhhhhhHHHHHHHHHHHHHhhccchhhhhhhhHHHHHHHhhchhhhHHHHHHHHhcCHHHHHHH
Q 017811          176 EERIGAADRRKMDGNALFKEEKLEEAMQQYEMAIAYMGDDFMFQLFGKYRDMALAVKNPCHLNMAACLLKLKRYEEAIGQ  255 (365)
Q Consensus       176 ~e~~~~a~~~k~~G~~~~~~~~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~kl~~~~~A~~~  255 (365)
                      +..++.|..++.+||.+|+.|+|.+|+..|++|+.+.|.+..                 +|+|+|.||+.+|++.+|+.+
T Consensus         4 ~~~l~~a~~l~~~gn~~~~~~~y~~A~~~~~~al~~~p~~~~-----------------~~~~lg~~~~~~~~~~~A~~~   66 (159)
T d1a17a_           4 DGALKRAEELKTQANDYFKAKDYENAIKFYSQAIELNPSNAI-----------------YYGNRSLAYLRTECYGYALGD   66 (159)
T ss_dssp             HHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHH-----------------HHHHHHHHHHHTTCHHHHHHH
T ss_pred             hHHHHHHHHHHHHHHHHHHcCCHHHHHHHhhhccccchhhhh-----------------hhhhhHHHHHhccccchHHHH
Confidence            456789999999999999999999999999999999998754                 499999999999999999999


Q ss_pred             HHHHHhCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHH
Q 017811          256 CSLVLGEDENNVKALFRRGKARAELGQTDAAREDFLKAGKFAPEDKSIARELRLLAEHE  314 (365)
Q Consensus       256 ~~~aL~~~p~n~ka~~~~g~a~~~l~~~~~A~~~l~~al~l~P~n~~~~~~l~~l~~~~  314 (365)
                      |+++|+++|+++.+|+++|.++..+|+|++|+.+|++++.++|+|..+...+..+....
T Consensus        67 ~~kal~~~p~~~~a~~~~g~~~~~~g~~~eA~~~~~~a~~~~p~~~~~~~~l~~~~~~~  125 (159)
T d1a17a_          67 ATRAIELDKKYIKGYYRRAASNMALGKFRAALRDYETVVKVKPHDKDAKMKYQECNKIV  125 (159)
T ss_dssp             HHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHcccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHH
Confidence            99999999999999999999999999999999999999999999999998888775543

>d2c2la1 a.118.8.1 (A:24-224) STIP1 homology and U box-containing protein 1, STUB1 {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: STIP1 homology and U box-containing protein 1, STUB1
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.79  E-value=2.6e-19  Score=152.72  Aligned_cols=102  Identities=32%  Similarity=0.370  Sum_probs=97.3

Q ss_pred             HHHhhhhhhhhhhhhhHHHHHHHHHHHHHhhccchhhhhhhhHHHHHHHhhchhhhHHHHHHHHhcCHHHHHHHHHHHHh
Q 017811          182 ADRRKMDGNALFKEEKLEEAMQQYEMAIAYMGDDFMFQLFGKYRDMALAVKNPCHLNMAACLLKLKRYEEAIGQCSLVLG  261 (365)
Q Consensus       182 a~~~k~~G~~~~~~~~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~kl~~~~~A~~~~~~aL~  261 (365)
                      |..+++.|+.+|+.|+|++|+..|++||.+.|.+..                 +|+|+|.||+++|+|++|+.+|++||+
T Consensus         4 a~~l~~~Gn~~~~~g~~~~Ai~~~~kal~~~p~~~~-----------------~~~~lg~~y~~~~~~~~Ai~~~~~al~   66 (201)
T d2c2la1           4 AQELKEQGNRLFVGRKYPEAAACYGRAITRNPLVAV-----------------YYTNRALCYLKMQQPEQALADCRRALE   66 (201)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHH-----------------HHHHHHHHHHHTTCHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHH-----------------HHHhHHHHHhhhhhhhhhhHHHHHHHH
Confidence            677999999999999999999999999999998744                 599999999999999999999999999


Q ss_pred             CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCc
Q 017811          262 EDENNVKALFRRGKARAELGQTDAAREDFLKAGKFAPED  300 (365)
Q Consensus       262 ~~p~n~ka~~~~g~a~~~l~~~~~A~~~l~~al~l~P~n  300 (365)
                      ++|+++.+|+++|.+|..+|+|++|+..|++|+.++|++
T Consensus        67 l~p~~~~a~~~lg~~~~~l~~~~~A~~~~~~al~l~p~~  105 (201)
T d2c2la1          67 LDGQSVKAHFFLGQCQLEMESYDEAIANLQRAYSLAKEQ  105 (201)
T ss_dssp             SCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHT
T ss_pred             hCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCccc
Confidence            999999999999999999999999999999999998854

>d1elra_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Hop
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.74  E-value=1.7e-17  Score=132.19  Aligned_cols=118  Identities=18%  Similarity=0.175  Sum_probs=104.4

Q ss_pred             HHHHHhhhhhhhhhhhhhHHHHHHHHHHHHHhhccchhhhhhhhHHHHHHHhhchhhhHHHHHHHHhcCHHHHHHHHHHH
Q 017811          180 GAADRRKMDGNALFKEEKLEEAMQQYEMAIAYMGDDFMFQLFGKYRDMALAVKNPCHLNMAACLLKLKRYEEAIGQCSLV  259 (365)
Q Consensus       180 ~~a~~~k~~G~~~~~~~~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~kl~~~~~A~~~~~~a  259 (365)
                      +.|..+++.|+.+|..|+|.+|+.+|++||.+.|.+..                 +++|+|.||.++|+|++|+.+|+++
T Consensus         2 ~~a~~~k~~G~~~~~~~~y~~Ai~~y~~al~~~p~~~~-----------------~~~~~a~~~~~~~~~~~A~~~~~~a   64 (128)
T d1elra_           2 KQALKEKELGNDAYKKKDFDTALKHYDKAKELDPTNMT-----------------YITNQAAVYFEKGDYNKCRELCEKA   64 (128)
T ss_dssp             HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHH-----------------HHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHH-----------------HHHhHHHHHHHcCchHHHHHHHHHH
Confidence            46889999999999999999999999999999998643                 5999999999999999999999999


Q ss_pred             HhCCCCCH-------HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHHH
Q 017811          260 LGEDENNV-------KALFRRGKARAELGQTDAAREDFLKAGKFAPEDKSIARELRLLAEHEK  315 (365)
Q Consensus       260 L~~~p~n~-------ka~~~~g~a~~~l~~~~~A~~~l~~al~l~P~n~~~~~~l~~l~~~~~  315 (365)
                      |+++|.+.       ++|+++|.++..+++|++|+.+|.+++..+|. +++...+..+.+.++
T Consensus        65 l~l~~~~~~~~~~~a~~~~~lg~~~~~~~~~~~A~~~~~kal~~~~~-~~~~~~l~~~~k~lk  126 (128)
T d1elra_          65 IEVGRENREDYRQIAKAYARIGNSYFKEEKYKDAIHFYNKSLAEHRT-PDVLKKCQQAEKILK  126 (128)
T ss_dssp             HHHHHHSTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCC-HHHHHHHHHHHHHHH
T ss_pred             HHhCcccHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCC-HHHHHHHHHHHHHHh
Confidence            99998774       58888999999999999999999999999875 666667766655443

>d1nzna_ a.118.8.1 (A:) Mitochondria fission protein Fis1 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Mitochondria fission protein Fis1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.66  E-value=4e-16  Score=123.02  Aligned_cols=113  Identities=15%  Similarity=0.099  Sum_probs=100.9

Q ss_pred             hhhhhhhhhhhhHHHHHHHHHHHHHhhccchhhhhhhhHHHHHHHhhchhhhHHHHHHHH---hcCHHHHHHHHHHHHhC
Q 017811          186 KMDGNALFKEEKLEEAMQQYEMAIAYMGDDFMFQLFGKYRDMALAVKNPCHLNMAACLLK---LKRYEEAIGQCSLVLGE  262 (365)
Q Consensus       186 k~~G~~~~~~~~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~k---l~~~~~A~~~~~~aL~~  262 (365)
                      -..+|.++..++|.+|.+.|+++|.+.|.+..                 +++|+|.|+++   .+++.+|+..++++|..
T Consensus         3 ~~l~n~~~~~~~l~~Ae~~Y~~aL~~~p~~~~-----------------~~~n~a~~L~~s~~~~d~~~Ai~~l~~~l~~   65 (122)
T d1nzna_           3 EAVLNELVSVEDLLKFEKKFQSEKAAGSVSKS-----------------TQFEYAWCLVRTRYNDDIRKGIVLLEELLPK   65 (122)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHSCCCHH-----------------HHHHHHHHHTTSSSHHHHHHHHHHHHHHTTT
T ss_pred             HHHHHHhcCHHHHHHHHHHHHHHHhhCCCCHH-----------------HHHHHHHHHHHhcchHHHHHHHHHHHHHHhc
Confidence            45678999999999999999999999998744                 49999999987   45667899999999999


Q ss_pred             CCCC--HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHHH
Q 017811          263 DENN--VKALFRRGKARAELGQTDAAREDFLKAGKFAPEDKSIARELRLLAEHEK  315 (365)
Q Consensus       263 ~p~n--~ka~~~~g~a~~~l~~~~~A~~~l~~al~l~P~n~~~~~~l~~l~~~~~  315 (365)
                      +|.+  +.++|.+|.+|..+|+|++|+..|+++++++|+|..++..+..+..+.+
T Consensus        66 ~~~~~~~~~~~~Lg~~y~~~g~~~~A~~~~~~aL~~~P~~~~A~~l~~~I~~~~~  120 (122)
T d1nzna_          66 GSKEEQRDYVFYLAVGNYRLKEYEKALKYVRGLLQTEPQNNQAKELERLIDKAMK  120 (122)
T ss_dssp             SCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHH
T ss_pred             cCCchHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHHc
Confidence            9876  4599999999999999999999999999999999999998888866554

>d1xnfa_ a.118.8.1 (A:) Lipoprotein NlpI {Escherichia coli [TaxId: 562]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Lipoprotein NlpI
species: Escherichia coli [TaxId: 562]

Probab=99.63  E-value=2.9e-15  Score=131.98  Aligned_cols=118  Identities=19%  Similarity=0.059  Sum_probs=108.2

Q ss_pred             HHHHHhhhhhhhhhhhhhHHHHHHHHHHHHHhhccchhhhhhhhHHHHHHHhhchhhhHHHHHHHHhcCHHHHHHHHHHH
Q 017811          180 GAADRRKMDGNALFKEEKLEEAMQQYEMAIAYMGDDFMFQLFGKYRDMALAVKNPCHLNMAACLLKLKRYEEAIGQCSLV  259 (365)
Q Consensus       180 ~~a~~~k~~G~~~~~~~~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~kl~~~~~A~~~~~~a  259 (365)
                      ..+..+..+|..++..|+|++|+..|++||.+.|++..                 +|+++|.||.++|++++|+.+|+++
T Consensus        35 ~~a~~~~~~G~~y~~~g~~~~A~~~~~~al~l~p~~~~-----------------a~~~lg~~~~~~g~~~~A~~~~~~a   97 (259)
T d1xnfa_          35 ERAQLLYERGVLYDSLGLRALARNDFSQALAIRPDMPE-----------------VFNYLGIYLTQAGNFDAAYEAFDSV   97 (259)
T ss_dssp             HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCCHH-----------------HHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHCCCHHHHHHHHHHhhccCCCCHH-----------------HHhhhchHHHHHHHHHHhhhhhhHH
Confidence            46888999999999999999999999999999998744                 4999999999999999999999999


Q ss_pred             HhCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHH
Q 017811          260 LGEDENNVKALFRRGKARAELGQTDAAREDFLKAGKFAPEDKSIARELRLLAEHE  314 (365)
Q Consensus       260 L~~~p~n~ka~~~~g~a~~~l~~~~~A~~~l~~al~l~P~n~~~~~~l~~l~~~~  314 (365)
                      ++++|+++.+++++|.+|..+|++++|+..|+++++++|++......+..+....
T Consensus        98 l~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~  152 (259)
T d1xnfa_          98 LELDPTYNYAHLNRGIALYYGGRDKLAQDDLLAFYQDDPNDPFRSLWLYLAEQKL  152 (259)
T ss_dssp             HHHCTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHH
T ss_pred             HHHHhhhhhhHHHHHHHHHHHhhHHHHHHHHHHHHhhccccHHHHHHHHHHHHHh
Confidence            9999999999999999999999999999999999999999988776666554433

>d1zu2a1 a.118.8.1 (A:1-145) Mitochondrial import receptor subunit tom20-3 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Mitochondrial import receptor subunit tom20-3
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=99.59  E-value=3.4e-15  Score=121.25  Aligned_cols=117  Identities=19%  Similarity=0.111  Sum_probs=102.9

Q ss_pred             hhhhhhhhhhHHHHHHHHHHHHHhhccchhhhhhhhHHHHHHHhhchhhhHHHHHHHHh----------cCHHHHHHHHH
Q 017811          188 DGNALFKEEKLEEAMQQYEMAIAYMGDDFMFQLFGKYRDMALAVKNPCHLNMAACLLKL----------KRYEEAIGQCS  257 (365)
Q Consensus       188 ~G~~~~~~~~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~kl----------~~~~~A~~~~~  257 (365)
                      .++.+-+.+.|++|+..|++|+.+.|.+..                 +++|+|.|+..+          +.+++|+..|+
T Consensus         3 ~~~~~~r~~~fe~A~~~~e~al~~~P~~~~-----------------~~~~~g~~l~~~~~~~~~~e~~~~~~~Ai~~~~   65 (145)
T d1zu2a1           3 TETEFDRILLFEQIRQDAENTYKSNPLDAD-----------------NLTRWGGVLLELSQFHSISDAKQMIQEAITKFE   65 (145)
T ss_dssp             CCCSHHHHHHHHHHHHHHHHHHHHCTTCHH-----------------HHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHH
T ss_pred             hhHHHHHHccHHHHHHHHHHHHhhCCcchH-----------------HHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHH
Confidence            456777889999999999999999999855                 499999999865          45689999999


Q ss_pred             HHHhCCCCCHHHHHHHHHHHHHcCC-----------HHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHHHHHHHHH
Q 017811          258 LVLGEDENNVKALFRRGKARAELGQ-----------TDAAREDFLKAGKFAPEDKSIARELRLLAEHEKAVYKKQ  321 (365)
Q Consensus       258 ~aL~~~p~n~ka~~~~g~a~~~l~~-----------~~~A~~~l~~al~l~P~n~~~~~~l~~l~~~~~~~~~~~  321 (365)
                      +||+++|+++.+|+++|.+|..+|+           |++|+.+|++++.++|+|..++..|..+.+..+.+.+..
T Consensus        66 kAl~l~P~~~~a~~~lG~~y~~~g~~~~~~~~~~~~~~~A~~~~~kal~l~P~~~~~~~~L~~~~ka~~~~~e~~  140 (145)
T d1zu2a1          66 EALLIDPKKDEAVWCIGNAYTSFAFLTPDETEAKHNFDLATQFFQQAVDEQPDNTHYLKSLEMTAKAPQLHAEAY  140 (145)
T ss_dssp             HHHHHCTTCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHTHHHHHHHHH
T ss_pred             HHHHhcchhhHHHhhHHHHHHHcccchhhHHHHHHhHHHhhhhhhcccccCCCHHHHHHHHHHHHHHHHHHHHHH
Confidence            9999999999999999999988764           799999999999999999999999998877766665543

>d1ix5a_ d.26.1.1 (A:) Archaeal FKBP {Archaeon Methanococcus thermolithotrophicus [TaxId: 2186]}

class: Alpha and beta proteins (a+b)
fold: FKBP-like
superfamily: FKBP-like
family: FKBP immunophilin/proline isomerase
domain: Archaeal FKBP
species: Archaeon Methanococcus thermolithotrophicus [TaxId: 2186]

Probab=99.58  E-value=5.1e-16  Score=126.52  Aligned_cols=72  Identities=26%  Similarity=0.382  Sum_probs=65.7

Q ss_pred             CCCCCEEEEEEEEEEcCCCeeeccCcC-------------CCCcceeecCCCCchhhhHHHHHhcCCcCcEEEEEecccc
Q 017811           67 PSKYSTCFLHYRAWAESTRHKFDDTWL-------------EQQPLEMVLGKEKKEMTGLAIGVSSMKAGEHALLHVGWEL  133 (365)
Q Consensus        67 p~~g~~v~v~y~~~~~~~g~~fd~s~~-------------~~~p~~f~lg~~~~~i~g~e~~l~~Mk~GE~~~~~i~~~~  133 (365)
                      ++.|+.|+|||++++.+ |++||+|+.             ..+|++|.+|.| +++|||+.+|.+|++|++..|.|||..
T Consensus         2 v~~G~~V~v~Y~~~~~~-G~~fdsT~e~~~~~~~~~~~~~~~~P~~f~~G~g-~~ipglE~al~gm~~Ge~~~v~i~p~~   79 (151)
T d1ix5a_           2 VDKGVKIKVDYIGKLES-GDVFDTSIEEVAKEAGIYAPDREYEPLEFVVGEG-QLIQGFEEAVLDMEVGDEKTVKIPAEK   79 (151)
T ss_dssp             CCTTCEEEECCEECCTT-SCCCEESCHHHHHHHTCCCSSCCCCCEEEETTTT-CSCHHHHHHHHTCCTTCCCEEEECTTT
T ss_pred             ccCCCEEEEEEEEEECC-CCEEEeCchHhcccccccccccCCCCEEEEecCC-CccHHHHHHHHhhcCCceeEEEeCHHH
Confidence            56899999999999987 999999863             347999999999 899999999999999999999999999


Q ss_pred             ccCCCCC
Q 017811          134 GYGKEGS  140 (365)
Q Consensus       134 ~yg~~g~  140 (365)
                      |||+...
T Consensus        80 ayG~~d~   86 (151)
T d1ix5a_          80 AYGNRNE   86 (151)
T ss_dssp             SSCSCCS
T ss_pred             hcccccc
Confidence            9998654

>d1hh8a_ a.118.8.1 (A:) Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Neutrophil cytosolic factor 2 (NCF-2, p67-phox)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.58  E-value=2.5e-14  Score=121.60  Aligned_cols=137  Identities=15%  Similarity=0.122  Sum_probs=113.5

Q ss_pred             HHHHHhhhhhhhhhhhhhHHHHHHHHHHHHHhhccchhhhhhhhHHHHHHHhhchhhhHHHHHHHHhcCHHHHHHHHHHH
Q 017811          180 GAADRRKMDGNALFKEEKLEEAMQQYEMAIAYMGDDFMFQLFGKYRDMALAVKNPCHLNMAACLLKLKRYEEAIGQCSLV  259 (365)
Q Consensus       180 ~~a~~~k~~G~~~~~~~~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~kl~~~~~A~~~~~~a  259 (365)
                      ..+-.+..+|..++..|+|+.|+..|.++   .+.+                 ..+++|+|.||..+|+|++|+.+|++|
T Consensus         3 ~~~~~l~~~g~~~~~~~d~~~Al~~~~~i---~~~~-----------------~~~~~nlG~~~~~~g~~~~A~~~~~kA   62 (192)
T d1hh8a_           3 VEAISLWNEGVLAADKKDWKGALDAFSAV---QDPH-----------------SRICFNIGCMYTILKNMTEAEKAFTRS   62 (192)
T ss_dssp             HHHHHHHHHHHHHHHTTCHHHHHHHHHTS---SSCC-----------------HHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHCCCHHHHHHHHHhc---CCCC-----------------HHHHHHHHHHHHHcCCchhHHHHHHHH
Confidence            34567778999999999999999999864   3332                 224899999999999999999999999


Q ss_pred             HhCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCc----------------HHHHHHHHHHHHHHHHHHHHHHH
Q 017811          260 LGEDENNVKALFRRGKARAELGQTDAAREDFLKAGKFAPED----------------KSIARELRLLAEHEKAVYKKQKE  323 (365)
Q Consensus       260 L~~~p~n~ka~~~~g~a~~~l~~~~~A~~~l~~al~l~P~n----------------~~~~~~l~~l~~~~~~~~~~~k~  323 (365)
                      |+++|+++.+|+++|.+|..+|+|++|+.+|++|+...|.|                .++...++.+...+++..+... 
T Consensus        63 l~ldp~~~~a~~~~g~~~~~~g~~~~A~~~~~kAl~~~~~n~~~~~~~~~~~~~~~~~e~~~n~a~~~~~~~~~~~A~~-  141 (192)
T d1hh8a_          63 INRDKHLAVAYFQRGMLYYQTEKYDLAIKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEE-  141 (192)
T ss_dssp             HHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHH-
T ss_pred             HHHhhhhhhhHHHHHHHHHhhccHHHHHHHHHHHHHhCccCchHHHHHhhhhcccchHHHHHHHHHHHHHCCCHHHHHH-
Confidence            99999999999999999999999999999999999876654                3556677888777777766554 


Q ss_pred             HHhcccCCCCCccc
Q 017811          324 IYKGIFGPRPEPKQ  337 (365)
Q Consensus       324 ~y~kmf~~~~~~~~  337 (365)
                      .+.+.+...+....
T Consensus       142 ~l~~A~~~~~~~~~  155 (192)
T d1hh8a_         142 QLALATSMKSEPRH  155 (192)
T ss_dssp             HHHHHHTTCCSGGG
T ss_pred             HHHHHHhcCCCcch
Confidence            47777777665433

>d2hr2a1 a.118.8.8 (A:2-157) Hypothetical protein CT2138 {Chlorobium tepidum [TaxId: 1097]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: CT2138-like
domain: Hypothetical protein CT2138
species: Chlorobium tepidum [TaxId: 1097]

Probab=99.56  E-value=3.6e-15  Score=122.46  Aligned_cols=118  Identities=19%  Similarity=0.209  Sum_probs=96.6

Q ss_pred             HHHHHHHhhhhhhhhhhhhhHHHHHHHHHHHHHhhccchhhhhhhhHHHHHHHhhchhhhHHHHHHHHhcCHHHHHHHHH
Q 017811          178 RIGAADRRKMDGNALFKEEKLEEAMQQYEMAIAYMGDDFMFQLFGKYRDMALAVKNPCHLNMAACLLKLKRYEEAIGQCS  257 (365)
Q Consensus       178 ~~~~a~~~k~~G~~~~~~~~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~kl~~~~~A~~~~~  257 (365)
                      .+..+......|+.++..|+|++|+..|++||.+.|..........     ......+|.|+|.||.++|+|++|+.+|+
T Consensus         5 ~~a~a~~~l~~g~~~~~~g~y~~Ai~~y~~Al~i~~~~~~~~~~~~-----~~~~a~~~~nlg~~~~~lg~~~~A~~~~~   79 (156)
T d2hr2a1           5 EVVGAYLALSDAQRQLVAGEYDEAAANCRRAMEISHTMPPEEAFDH-----AGFDAFCHAGLAEALAGLRSFDEALHSAD   79 (156)
T ss_dssp             HHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCTTSCCCH-----HHHHHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhChhhhhhhhccc-----chhHHHHHHHHHHHHHHcCccchhhHhhh
Confidence            4556777778899999999999999999999999987543211100     11224579999999999999999999999


Q ss_pred             HHHhCCCC-----------CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCc
Q 017811          258 LVLGEDEN-----------NVKALFRRGKARAELGQTDAAREDFLKAGKFAPED  300 (365)
Q Consensus       258 ~aL~~~p~-----------n~ka~~~~g~a~~~l~~~~~A~~~l~~al~l~P~n  300 (365)
                      ++|.+.|.           ..++|+++|.+|..+|++++|+.+|++|+++.|+.
T Consensus        80 ~al~~~~~~~~~~~~~~~~~~~a~~~~g~~~~~lg~~eeA~~~~~~Al~l~~~~  133 (156)
T d2hr2a1          80 KALHYFNRRGELNQDEGKLWISAVYSRALALDGLGRGAEAMPEFKKVVEMIEER  133 (156)
T ss_dssp             HHHHHHHHHCCTTSTHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHC
T ss_pred             hhhhcccccccccccccchhHHHHhhhHHHHHHHHHHHHHHHHHHHHHHhhHHh
Confidence            99976542           35689999999999999999999999999997754

>d2h6fa1 a.118.6.1 (A:55-369) Protein farnesyltransferase alpha-subunit {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Protein prenylyltransferase
family: Protein prenylyltransferase
domain: Protein farnesyltransferase alpha-subunit
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.54  E-value=1.1e-14  Score=133.57  Aligned_cols=137  Identities=12%  Similarity=0.049  Sum_probs=82.2

Q ss_pred             HHHHHhhhhhhhhhhhhhHHHHHHHHHHHHHhhccchhhhhhhhHHHHHHHhhchhhhHHHHHHHHhcC-HHHHHHHHHH
Q 017811          180 GAADRRKMDGNALFKEEKLEEAMQQYEMAIAYMGDDFMFQLFGKYRDMALAVKNPCHLNMAACLLKLKR-YEEAIGQCSL  258 (365)
Q Consensus       180 ~~a~~~k~~G~~~~~~~~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~kl~~-~~~A~~~~~~  258 (365)
                      +.+..+...|..+.+.+.+++|+..|.+||+++|.+...                 ++|+|.|+..++. +++|+.++++
T Consensus        41 ~~~~a~~~~~~~~~~~e~~~~Al~~~~~ai~lnP~~~~a-----------------~~~r~~~l~~l~~~~~eal~~~~~  103 (315)
T d2h6fa1          41 KFRDVYDYFRAVLQRDERSERAFKLTRDAIELNAANYTV-----------------WHFRRVLLKSLQKDLHEEMNYITA  103 (315)
T ss_dssp             HHHHHHHHHHHHHHHTCCCHHHHHHHHHHHHHCTTCHHH-----------------HHHHHHHHHHTTCCHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHCCCChHH-----------------HHHHHHHHHHhCcCHHHHHHHHHH
Confidence            456667777888888888999999999999998887543                 5555555555542 5555555555


Q ss_pred             HHhCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCCC
Q 017811          259 VLGEDENNVKALFRRGKARAELGQTDAAREDFLKAGKFAPEDKSIARELRLLAEHEKAVYKKQKEIYKGIFGPRPE  334 (365)
Q Consensus       259 aL~~~p~n~ka~~~~g~a~~~l~~~~~A~~~l~~al~l~P~n~~~~~~l~~l~~~~~~~~~~~k~~y~kmf~~~~~  334 (365)
                      +|+++|++..+|+.+|.++..+|++++|+..|.++++++|+|..+...++.+....+.+.++ ...|.+++...|.
T Consensus       104 al~~~p~~~~a~~~~~~~~~~l~~~~eAl~~~~kal~~dp~n~~a~~~~~~~~~~~~~~~~A-l~~~~~al~~~p~  178 (315)
T d2h6fa1         104 IIEEQPKNYQVWHHRRVLVEWLRDPSQELEFIADILNQDAKNYHAWQHRQWVIQEFKLWDNE-LQYVDQLLKEDVR  178 (315)
T ss_dssp             HHHHCTTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCTTH-HHHHHHHHHHCTT
T ss_pred             HHHHHHhhhhHHHHHhHHHHhhccHHHHHHHHhhhhhhhhcchHHHHHHHHHHHHHHhhHHH-HHHHHHHHHHCCc
Confidence            55555555555555555555555555555555555555555555555555554444444332 2235555444443

>d1hxia_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Trypanosoma brucei [TaxId: 5691]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor)
species: Trypanosoma brucei [TaxId: 5691]

Probab=99.52  E-value=2.5e-14  Score=110.66  Aligned_cols=94  Identities=12%  Similarity=-0.008  Sum_probs=85.7

Q ss_pred             HhhhhhhhhhhhhhHHHHHHHHHHHHHhhccchhhhhhhhHHHHHHHhhchhhhHHHHHHHHhcCHHHHHHHHHHHHhCC
Q 017811          184 RRKMDGNALFKEEKLEEAMQQYEMAIAYMGDDFMFQLFGKYRDMALAVKNPCHLNMAACLLKLKRYEEAIGQCSLVLGED  263 (365)
Q Consensus       184 ~~k~~G~~~~~~~~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~kl~~~~~A~~~~~~aL~~~  263 (365)
                      .....|..+++.|+|.+|+..|++++...|.+..                 +++++|.|+.+++++++|+.+++++++++
T Consensus        18 ~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~-----------------a~~~lg~~~~~~~~~~~A~~~~~~al~~~   80 (112)
T d1hxia_          18 NPMEEGLSMLKLANLAEAALAFEAVCQKEPEREE-----------------AWRSLGLTQAENEKDGLAIIALNHARMLD   80 (112)
T ss_dssp             CHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHH-----------------HHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred             HHHHHHHHHHHHhhhHHHHHHHhhhcccccccch-----------------hhhhhhhhhhhhhhHHHhhcccccccccc
Confidence            3467899999999999999999999999998644                 49999999999999999999999999999


Q ss_pred             CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 017811          264 ENNVKALFRRGKARAELGQTDAAREDFLKAG  294 (365)
Q Consensus       264 p~n~ka~~~~g~a~~~l~~~~~A~~~l~~al  294 (365)
                      |++..+++.+|.+|..+|++++|+..|++.|
T Consensus        81 p~~~~a~~~la~~y~~~g~~~~A~~~l~~~l  111 (112)
T d1hxia_          81 PKDIAVHAALAVSHTNEHNANAALASLRAWL  111 (112)
T ss_dssp             TTCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             cccccchHHHHHHHHHCCCHHHHHHHHHHHh
Confidence            9999999999999999999999999999876

>d1xnfa_ a.118.8.1 (A:) Lipoprotein NlpI {Escherichia coli [TaxId: 562]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Lipoprotein NlpI
species: Escherichia coli [TaxId: 562]

Probab=99.48  E-value=1.1e-13  Score=121.59  Aligned_cols=138  Identities=14%  Similarity=0.025  Sum_probs=114.1

Q ss_pred             hhhhhhhHHHHHHHHHHHHHhhccchhhhhhhhHHHHHHHhhchhhhHHHHHHHHhcCHHHHHHHHHHHHhCCCCCHHHH
Q 017811          191 ALFKEEKLEEAMQQYEMAIAYMGDDFMFQLFGKYRDMALAVKNPCHLNMAACLLKLKRYEEAIGQCSLVLGEDENNVKAL  270 (365)
Q Consensus       191 ~~~~~~~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~kl~~~~~A~~~~~~aL~~~p~n~ka~  270 (365)
                      .+....+++.|+..+.+++...+...             .....+++++|.||.++|+|++|+.+|+++|.++|+++.+|
T Consensus         8 ~~~~~~~~e~al~~~~e~l~~~~~~~-------------~~~a~~~~~~G~~y~~~g~~~~A~~~~~~al~l~p~~~~a~   74 (259)
T d1xnfa_           8 PLQPTLQQEVILARMEQILASRALTD-------------DERAQLLYERGVLYDSLGLRALARNDFSQALAIRPDMPEVF   74 (259)
T ss_dssp             CCCCCHHHHHHHHHHHHHHTSSCCCH-------------HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCCHHHH
T ss_pred             cccccHHHHHHHHHHHHHHHhhhcCC-------------HHHHHHHHHHHHHHHHCCCHHHHHHHHHHhhccCCCCHHHH
Confidence            34455678889999998877544221             11345699999999999999999999999999999999999


Q ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCCCccccchhH
Q 017811          271 FRRGKARAELGQTDAAREDFLKAGKFAPEDKSIARELRLLAEHEKAVYKKQKEIYKGIFGPRPEPKQKKNWL  342 (365)
Q Consensus       271 ~~~g~a~~~l~~~~~A~~~l~~al~l~P~n~~~~~~l~~l~~~~~~~~~~~k~~y~kmf~~~~~~~~~~~~~  342 (365)
                      +++|.+|..+|++++|+..|+++++++|++..+...++.+...+++..++ ...|.+.+...|.......|.
T Consensus        75 ~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A-~~~~~~al~~~p~~~~~~~~~  145 (259)
T d1xnfa_          75 NYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAHLNRGIALYYGGRDKLA-QDDLLAFYQDDPNDPFRSLWL  145 (259)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTHHHHHHHHHHHHTTCHHHH-HHHHHHHHHHCTTCHHHHHHH
T ss_pred             hhhchHHHHHHHHHHhhhhhhHHHHHHhhhhhhHHHHHHHHHHHhhHHHH-HHHHHHHHhhccccHHHHHHH
Confidence            99999999999999999999999999999999999999998887777655 455888887777655443333

>d2h6fa1 a.118.6.1 (A:55-369) Protein farnesyltransferase alpha-subunit {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Protein prenylyltransferase
family: Protein prenylyltransferase
domain: Protein farnesyltransferase alpha-subunit
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.47  E-value=6.5e-14  Score=128.20  Aligned_cols=140  Identities=12%  Similarity=0.051  Sum_probs=117.7

Q ss_pred             HHHHHhhhhhhhhhhhh-hHHHHHHHHHHHHHhhccchhhhhhhhHHHHHHHhhchhhhHHHHHHHHhcCHHHHHHHHHH
Q 017811          180 GAADRRKMDGNALFKEE-KLEEAMQQYEMAIAYMGDDFMFQLFGKYRDMALAVKNPCHLNMAACLLKLKRYEEAIGQCSL  258 (365)
Q Consensus       180 ~~a~~~k~~G~~~~~~~-~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~kl~~~~~A~~~~~~  258 (365)
                      .....+..+|..+...+ ++++|+..|.++|.+.|.+..                 ++.++|.++.++|++++|+.++++
T Consensus        75 ~~~~a~~~r~~~l~~l~~~~~eal~~~~~al~~~p~~~~-----------------a~~~~~~~~~~l~~~~eAl~~~~k  137 (315)
T d2h6fa1          75 ANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQPKNYQ-----------------VWHHRRVLVEWLRDPSQELEFIAD  137 (315)
T ss_dssp             TCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCTTCHH-----------------HHHHHHHHHHHHTCCTTHHHHHHH
T ss_pred             CChHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHHHhhhh-----------------HHHHHhHHHHhhccHHHHHHHHhh
Confidence            34456788999998876 599999999999999998754                 499999999999999999999999


Q ss_pred             HHhCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHHHH-----HHHHHHHHHhcccCCCC
Q 017811          259 VLGEDENNVKALFRRGKARAELGQTDAAREDFLKAGKFAPEDKSIARELRLLAEHEKA-----VYKKQKEIYKGIFGPRP  333 (365)
Q Consensus       259 aL~~~p~n~ka~~~~g~a~~~l~~~~~A~~~l~~al~l~P~n~~~~~~l~~l~~~~~~-----~~~~~k~~y~kmf~~~~  333 (365)
                      +++++|.|..+|+.+|.++..+++|++|+.+|+++++++|+|..+...++.+......     ...++-..|.+.+...|
T Consensus       138 al~~dp~n~~a~~~~~~~~~~~~~~~~Al~~~~~al~~~p~n~~a~~~r~~~l~~~~~~~~~~~~~~ai~~~~~al~~~P  217 (315)
T d2h6fa1         138 ILNQDAKNYHAWQHRQWVIQEFKLWDNELQYVDQLLKEDVRNNSVWNQRYFVISNTTGYNDRAVLEREVQYTLEMIKLVP  217 (315)
T ss_dssp             HHHHCTTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCSCSHHHHHHHHHHHHHHHHHST
T ss_pred             hhhhhhcchHHHHHHHHHHHHHHhhHHHHHHHHHHHHHCCccHHHHHHHHHHHHHccccchhhhhHHhHHHHHHHHHhCC
Confidence            9999999999999999999999999999999999999999999999888877544222     12344455667766666


Q ss_pred             Ccc
Q 017811          334 EPK  336 (365)
Q Consensus       334 ~~~  336 (365)
                      ...
T Consensus       218 ~~~  220 (315)
T d2h6fa1         218 HNE  220 (315)
T ss_dssp             TCH
T ss_pred             Cch
Confidence            543

>d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: O-GlcNAc transferase p110 subunit, OGT
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.45  E-value=3.3e-13  Score=123.61  Aligned_cols=137  Identities=16%  Similarity=0.087  Sum_probs=108.9

Q ss_pred             HHhhhhhhhhhhhhhHHHHHHHHHHHHHhhccchhhhhhhhHHHHHHHhhchhhhHHHHHHHHhcCHHHHHHHHHHHHhC
Q 017811          183 DRRKMDGNALFKEEKLEEAMQQYEMAIAYMGDDFMFQLFGKYRDMALAVKNPCHLNMAACLLKLKRYEEAIGQCSLVLGE  262 (365)
Q Consensus       183 ~~~k~~G~~~~~~~~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~kl~~~~~A~~~~~~aL~~  262 (365)
                      ..+...|..+++.|++++|+..|++++++.|.+..                 ++.++|.++..+|++.+|+..+..++..
T Consensus       238 ~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~-----------------~~~~l~~~~~~~~~~~~A~~~~~~~~~~  300 (388)
T d1w3ba_         238 VVHGNLACVYYEQGLIDLAIDTYRRAIELQPHFPD-----------------AYCNLANALKEKGSVAEAEDCYNTALRL  300 (388)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHTCSSCHH-----------------HHHHHHHHHHHHSCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHH-----------------HHHHHHHHHHHcCCHHHHHHHHHhhhcc
Confidence            34566888899999999999999999999887643                 3778888888888888888888888888


Q ss_pred             CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCCCccc
Q 017811          263 DENNVKALFRRGKARAELGQTDAAREDFLKAGKFAPEDKSIARELRLLAEHEKAVYKKQKEIYKGIFGPRPEPKQ  337 (365)
Q Consensus       263 ~p~n~ka~~~~g~a~~~l~~~~~A~~~l~~al~l~P~n~~~~~~l~~l~~~~~~~~~~~k~~y~kmf~~~~~~~~  337 (365)
                      .|.+..+++.+|.++..+|++++|+..|+++++++|++..+...++.+....++..++ ...|.+.+...|+...
T Consensus       301 ~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A-~~~~~~al~l~P~~~~  374 (388)
T d1w3ba_         301 CPTHADSLNNLANIKREQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEA-LMHYKEAIRISPTFAD  374 (388)
T ss_dssp             CTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHTTSCTTCHHHHHHHHHHHHTTTCCHHH-HHHHHHHHTTCTTCHH
T ss_pred             CCccchhhhHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHH-HHHHHHHHHhCCCCHH
Confidence            8888888888888888888888888888888888888888888888887776666544 4447778777765443

>d1hxva_ d.26.1.1 (A:) Trigger factor PPIase domain {Mycoplasma genitalium [TaxId: 2097]}

class: Alpha and beta proteins (a+b)
fold: FKBP-like
superfamily: FKBP-like
family: FKBP immunophilin/proline isomerase
domain: Trigger factor PPIase domain
species: Mycoplasma genitalium [TaxId: 2097]

Probab=99.44  E-value=1.1e-13  Score=101.19  Aligned_cols=85  Identities=18%  Similarity=0.312  Sum_probs=74.5

Q ss_pred             CCCCCCEEEEEEEEEEcCCCeeeccCcCCCCcceeecCCCCchhhhHHHHHhcCCcCcEEEEEeccccccCCCCCCCCCC
Q 017811           66 KPSKYSTCFLHYRAWAESTRHKFDDTWLEQQPLEMVLGKEKKEMTGLAIGVSSMKAGEHALLHVGWELGYGKEGSFSFPN  145 (365)
Q Consensus        66 ~p~~g~~v~v~y~~~~~~~g~~fd~s~~~~~p~~f~lg~~~~~i~g~e~~l~~Mk~GE~~~~~i~~~~~yg~~g~~~~~~  145 (365)
                      ++..||.|+|+|++++ + |++|+++.  .+.+.|.+|.+ +++|||+.+|.+|++||+..|.|++...|+..+      
T Consensus         1 k~a~GD~V~idy~g~~-d-G~~~~~~~--~~~~~~~lg~~-~~ipgf~~~l~g~~~Ge~~~~~i~~p~~y~~~~------   69 (85)
T d1hxva_           1 KLANGDIAIIDFTGIV-D-NKKLASAS--AQNYELTIGSN-SFIKGFETGLIAMKVNQKKTLALTFPSDYHVKE------   69 (85)
T ss_dssp             CCCSSEEEEEEEEEEE-T-TEECSTTC--CSEEEEEETSS-CSCTTHHHHHHTSCSSEEEEECCCCCTTSSSSG------
T ss_pred             CCCCCCEEEEEEEEEE-C-CEEccccc--ccCCCEEECCc-ccCchHHHHhccCcCCCeEEEEEEChhhcCccc------
Confidence            4678999999999997 4 89999864  35788999999 899999999999999999999999999999754      


Q ss_pred             CCCCCcEEEEEEEEeee
Q 017811          146 VSPMADLVYEVVLIGFD  162 (365)
Q Consensus       146 ip~~~~l~~~iel~~~~  162 (365)
                       .+|.++.|+|++.+++
T Consensus        70 -laGk~~~f~V~v~~Vk   85 (85)
T d1hxva_          70 -LQSKPVTFEVVLKAIK   85 (85)
T ss_dssp             -GGSCCCEEEEEECCBC
T ss_pred             -CCCCcEEEEEEEEEeC
Confidence             3688999999998763

>d1hh8a_ a.118.8.1 (A:) Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Neutrophil cytosolic factor 2 (NCF-2, p67-phox)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.43  E-value=1.1e-12  Score=111.28  Aligned_cols=101  Identities=15%  Similarity=0.061  Sum_probs=92.3

Q ss_pred             HHhhhhhhhhhhhhhHHHHHHHHHHHHHhhccchhhhhhhhHHHHHHHhhchhhhHHHHHHHHhcCHHHHHHHHHHHHhC
Q 017811          183 DRRKMDGNALFKEEKLEEAMQQYEMAIAYMGDDFMFQLFGKYRDMALAVKNPCHLNMAACLLKLKRYEEAIGQCSLVLGE  262 (365)
Q Consensus       183 ~~~k~~G~~~~~~~~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~kl~~~~~A~~~~~~aL~~  262 (365)
                      ..+...|+.++..|+|++|+..|++||+++|....                 +|+|+|.||.++|+|++|+.+|+++|..
T Consensus        37 ~~~~nlG~~~~~~g~~~~A~~~~~kAl~ldp~~~~-----------------a~~~~g~~~~~~g~~~~A~~~~~kAl~~   99 (192)
T d1hh8a_          37 RICFNIGCMYTILKNMTEAEKAFTRSINRDKHLAV-----------------AYFQRGMLYYQTEKYDLAIKDLKEALIQ   99 (192)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHH-----------------HHHHHHHHHHHTTCHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHHcCCchhHHHHHHHHHHHhhhhhh-----------------hHHHHHHHHHhhccHHHHHHHHHHHHHh
Confidence            35789999999999999999999999999998644                 5999999999999999999999999987


Q ss_pred             CCCC----------------HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCc
Q 017811          263 DENN----------------VKALFRRGKARAELGQTDAAREDFLKAGKFAPED  300 (365)
Q Consensus       263 ~p~n----------------~ka~~~~g~a~~~l~~~~~A~~~l~~al~l~P~n  300 (365)
                      .+.|                ..++|++|.++..+|++++|...|.+|+.+.|+.
T Consensus       100 ~~~n~~~~~~~~~~~~~~~~~e~~~n~a~~~~~~~~~~~A~~~l~~A~~~~~~~  153 (192)
T d1hh8a_         100 LRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATSMKSEP  153 (192)
T ss_dssp             TTTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCSG
T ss_pred             CccCchHHHHHhhhhcccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCc
Confidence            6644                4789999999999999999999999999999874

>d1fcha_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.43  E-value=2.3e-13  Score=123.52  Aligned_cols=104  Identities=17%  Similarity=0.217  Sum_probs=66.0

Q ss_pred             hhhhhhhhhhhhhHHHHHHHHHHHHHhhccchhhhhhhhHHHHHHHhhchhhhHHHHHHHHhcCHHHHHHHHHHHHhCCC
Q 017811          185 RKMDGNALFKEEKLEEAMQQYEMAIAYMGDDFMFQLFGKYRDMALAVKNPCHLNMAACLLKLKRYEEAIGQCSLVLGEDE  264 (365)
Q Consensus       185 ~k~~G~~~~~~~~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~kl~~~~~A~~~~~~aL~~~p  264 (365)
                      +...|..++..|++++|+..|++++...|.+..                 +++++|.||.++|++++|+..|+++++++|
T Consensus       175 ~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~-----------------~~~~lg~~~~~~g~~~~A~~~~~~al~~~p  237 (323)
T d1fcha_         175 QCGLGVLFNLSGEYDKAVDCFTAALSVRPNDYL-----------------LWNKLGATLANGNQSEEAVAAYRRALELQP  237 (323)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHH-----------------HHHHHHHHHHHTTCHHHHHHHHHHHHHHCT
T ss_pred             chhhHHHHHHHHHHhhhhccccccccccccccc-----------------chhhhhhcccccccchhHHHHHHHHHHHhh
Confidence            345566666666666666666666666665432                 366666666666777777776666666666


Q ss_pred             CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCcHHHHH
Q 017811          265 NNVKALFRRGKARAELGQTDAAREDFLKAGKFAPEDKSIAR  305 (365)
Q Consensus       265 ~n~ka~~~~g~a~~~l~~~~~A~~~l~~al~l~P~n~~~~~  305 (365)
                      +++.+|+.+|.+|..+|++++|+..|++|++++|++..+..
T Consensus       238 ~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~  278 (323)
T d1fcha_         238 GYIRSRYNLGISCINLGAHREAVEHFLEALNMQRKSRGPRG  278 (323)
T ss_dssp             TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTC-----
T ss_pred             ccHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCcChhhhh
Confidence            66666666777777777777777777767666666654443

>d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: O-GlcNAc transferase p110 subunit, OGT
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.43  E-value=4.5e-13  Score=122.67  Aligned_cols=115  Identities=17%  Similarity=0.043  Sum_probs=106.1

Q ss_pred             HHhhhhhhhhhhhhhHHHHHHHHHHHHHhhccchhhhhhhhHHHHHHHhhchhhhHHHHHHHHhcCHHHHHHHHHHHHhC
Q 017811          183 DRRKMDGNALFKEEKLEEAMQQYEMAIAYMGDDFMFQLFGKYRDMALAVKNPCHLNMAACLLKLKRYEEAIGQCSLVLGE  262 (365)
Q Consensus       183 ~~~k~~G~~~~~~~~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~kl~~~~~A~~~~~~aL~~  262 (365)
                      ..+...|..+...|++.+|+..|..++...|.+..                 ++.++|.++.++|++++|+..+++++++
T Consensus       272 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~-----------------~~~~l~~~~~~~~~~~~A~~~~~~al~~  334 (388)
T d1w3ba_         272 DAYCNLANALKEKGSVAEAEDCYNTALRLCPTHAD-----------------SLNNLANIKREQGNIEEAVRLYRKALEV  334 (388)
T ss_dssp             HHHHHHHHHHHHHSCHHHHHHHHHHHHHHCTTCHH-----------------HHHHHHHHHHTTTCHHHHHHHHHHHTTS
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHhhhccCCccch-----------------hhhHHHHHHHHCCCHHHHHHHHHHHHHh
Confidence            35667899999999999999999999999887643                 4889999999999999999999999999


Q ss_pred             CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHH
Q 017811          263 DENNVKALFRRGKARAELGQTDAAREDFLKAGKFAPEDKSIARELRLLAEHE  314 (365)
Q Consensus       263 ~p~n~ka~~~~g~a~~~l~~~~~A~~~l~~al~l~P~n~~~~~~l~~l~~~~  314 (365)
                      +|+++.+++++|.+|..+|++++|+..|++|++++|++..+...|+.+...+
T Consensus       335 ~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~l~P~~~~a~~~lg~~~~~~  386 (388)
T d1w3ba_         335 FPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRISPTFADAYSNMGNTLKEM  386 (388)
T ss_dssp             CTTCHHHHHHHHHHHHTTTCCHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHT
T ss_pred             CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc
Confidence            9999999999999999999999999999999999999999999998876543

>d1hxia_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Trypanosoma brucei [TaxId: 5691]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor)
species: Trypanosoma brucei [TaxId: 5691]

Probab=99.38  E-value=3.1e-12  Score=98.53  Aligned_cols=93  Identities=17%  Similarity=0.144  Sum_probs=86.4

Q ss_pred             hhhhHHHHHHHHhcCHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHH
Q 017811          234 PCHLNMAACLLKLKRYEEAIGQCSLVLGEDENNVKALFRRGKARAELGQTDAAREDFLKAGKFAPEDKSIARELRLLAEH  313 (365)
Q Consensus       234 ~~~~nla~~~~kl~~~~~A~~~~~~aL~~~p~n~ka~~~~g~a~~~l~~~~~A~~~l~~al~l~P~n~~~~~~l~~l~~~  313 (365)
                      ...+++|.++++.|++.+|+..+++++.++|+++.+|+.+|.++..++++++|+.+|+++++++|++..+...++.+...
T Consensus        17 ~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~la~~y~~   96 (112)
T d1hxia_          17 ENPMEEGLSMLKLANLAEAALAFEAVCQKEPEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPKDIAVHAALAVSHTN   96 (112)
T ss_dssp             SCHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhhhHHHHHHHhhhcccccccchhhhhhhhhhhhhhhHHHhhcccccccccccccccchHHHHHHHHH
Confidence            34789999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHhc
Q 017811          314 EKAVYKKQKEIYKG  327 (365)
Q Consensus       314 ~~~~~~~~k~~y~k  327 (365)
                      +++..++.+. +++
T Consensus        97 ~g~~~~A~~~-l~~  109 (112)
T d1hxia_          97 EHNANAALAS-LRA  109 (112)
T ss_dssp             HHHHHHHHHH-HHH
T ss_pred             CCCHHHHHHH-HHH
Confidence            9988777554 444

>d1elwa_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Hop
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.36  E-value=2.8e-12  Score=99.58  Aligned_cols=102  Identities=17%  Similarity=0.066  Sum_probs=94.4

Q ss_pred             hhHHHHHHHHhcCHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHHH
Q 017811          236 HLNMAACLLKLKRYEEAIGQCSLVLGEDENNVKALFRRGKARAELGQTDAAREDFLKAGKFAPEDKSIARELRLLAEHEK  315 (365)
Q Consensus       236 ~~nla~~~~kl~~~~~A~~~~~~aL~~~p~n~ka~~~~g~a~~~l~~~~~A~~~l~~al~l~P~n~~~~~~l~~l~~~~~  315 (365)
                      +.+.|..+++.|+|++|+..|+++|.++|.++.+|+.+|.+|..+|+|++|+..|.++++++|++..+...++.+...++
T Consensus         6 l~~~g~~~~~~g~~~eAi~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~g~~~~~~~   85 (117)
T d1elwa_           6 LKEKGNKALSVGNIDDALQCYSEAIKLDPHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKPDWGKGYSRKAAALEFLN   85 (117)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHhcCCcchhhhhcccccccccccccccchhhhhHHHhccchhhHHHHHHHHHHHcc
Confidence            56889999999999999999999999999999999999999999999999999999999999999999999999999988


Q ss_pred             HHHHHHHHHHhcccCCCCCcccc
Q 017811          316 AVYKKQKEIYKGIFGPRPEPKQK  338 (365)
Q Consensus       316 ~~~~~~k~~y~kmf~~~~~~~~~  338 (365)
                      ++.++.+. |.+.+...|+....
T Consensus        86 ~~~~A~~~-~~~a~~~~p~~~~~  107 (117)
T d1elwa_          86 RFEEAKRT-YEEGLKHEANNPQL  107 (117)
T ss_dssp             CHHHHHHH-HHHHHTTCTTCHHH
T ss_pred             CHHHHHHH-HHHHHHhCCCCHHH
Confidence            88766665 99999888876543

>d1a17a_ a.118.8.1 (A:) Protein phosphatase 5 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Protein phosphatase 5
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.34  E-value=2.9e-12  Score=104.86  Aligned_cols=104  Identities=17%  Similarity=0.031  Sum_probs=95.6

Q ss_pred             hhhHHHHHHHHhcCHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHH
Q 017811          235 CHLNMAACLLKLKRYEEAIGQCSLVLGEDENNVKALFRRGKARAELGQTDAAREDFLKAGKFAPEDKSIARELRLLAEHE  314 (365)
Q Consensus       235 ~~~nla~~~~kl~~~~~A~~~~~~aL~~~p~n~ka~~~~g~a~~~l~~~~~A~~~l~~al~l~P~n~~~~~~l~~l~~~~  314 (365)
                      .+...|.+|++.|+|++|+.+|+++|.++|+++.+|+++|.+|+.+|++++|+.+|+++++++|++..+...++.+...+
T Consensus        12 ~l~~~gn~~~~~~~y~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~kal~~~p~~~~a~~~~g~~~~~~   91 (159)
T d1a17a_          12 ELKTQANDYFKAKDYENAIKFYSQAIELNPSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKKYIKGYYRRAASNMAL   91 (159)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHcCCHHHHHHHhhhccccchhhhhhhhhhHHHHHhccccchHHHHHHHHHHHcccchHHHHHHHHHHHHc
Confidence            36788999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHhcccCCCCCccccc
Q 017811          315 KAVYKKQKEIYKGIFGPRPEPKQKK  339 (365)
Q Consensus       315 ~~~~~~~k~~y~kmf~~~~~~~~~~  339 (365)
                      +++.+.... |.+.+...|......
T Consensus        92 g~~~eA~~~-~~~a~~~~p~~~~~~  115 (159)
T d1a17a_          92 GKFRAALRD-YETVVKVKPHDKDAK  115 (159)
T ss_dssp             TCHHHHHHH-HHHHHHHSTTCHHHH
T ss_pred             CCHHHHHHH-HHHHHHcCCCCHHHH
Confidence            988877655 999988888766553

>d1tjca_ a.118.8.1 (A:) Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Prolyl 4-hydroxylase alpha-1 subunit, P4HA1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.33  E-value=1.4e-12  Score=97.58  Aligned_cols=89  Identities=11%  Similarity=0.009  Sum_probs=75.5

Q ss_pred             HHHhhhhhhhhhhhhhHHHHHHHHHHHHHhhccchhhhhhhhHHHHHHHhhchhhhHHHHHHHHhcCHHHHHHHHHHHHh
Q 017811          182 ADRRKMDGNALFKEEKLEEAMQQYEMAIAYMGDDFMFQLFGKYRDMALAVKNPCHLNMAACLLKLKRYEEAIGQCSLVLG  261 (365)
Q Consensus       182 a~~~k~~G~~~~~~~~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~kl~~~~~A~~~~~~aL~  261 (365)
                      +..+.+.|+.+++.|+|..|+..|++|+++.|.+.....          -...++.|||.||.++|++++|+.+++++|+
T Consensus         5 addc~~lG~~~~~~g~y~~A~~~~~~Al~~~~~~~~~~~----------~~~~~l~~Lg~~~~~~g~~~~A~~~y~~aL~   74 (95)
T d1tjca_           5 AEDSFELGKVAYTEADYYHTELWMEQALRQLDEGEISTI----------DKVSVLDYLSYAVYQQGDLDKALLLTKKLLE   74 (95)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSS----------CHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHhhhhccCc----------cHHHHHHHHhhHHHhcCChHHHHHHHHHHHH
Confidence            566789999999999999999999999999876432110          1235699999999999999999999999999


Q ss_pred             CCCCCHHHHHHHHHHHHHc
Q 017811          262 EDENNVKALFRRGKARAEL  280 (365)
Q Consensus       262 ~~p~n~ka~~~~g~a~~~l  280 (365)
                      ++|+++.|+++++.....+
T Consensus        75 l~P~~~~a~~Nl~~~~~~l   93 (95)
T d1tjca_          75 LDPEHQRANGNLKYFEYIM   93 (95)
T ss_dssp             HCTTCHHHHHHHHHHHHHH
T ss_pred             hCcCCHHHHHHHHHHHHHh
Confidence            9999999999998776654

>d2c2la1 a.118.8.1 (A:24-224) STIP1 homology and U box-containing protein 1, STUB1 {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: STIP1 homology and U box-containing protein 1, STUB1
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.32  E-value=4.2e-12  Score=107.03  Aligned_cols=98  Identities=11%  Similarity=0.015  Sum_probs=90.1

Q ss_pred             hhHHHHHHHHhcCHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHHH
Q 017811          236 HLNMAACLLKLKRYEEAIGQCSLVLGEDENNVKALFRRGKARAELGQTDAAREDFLKAGKFAPEDKSIARELRLLAEHEK  315 (365)
Q Consensus       236 ~~nla~~~~kl~~~~~A~~~~~~aL~~~p~n~ka~~~~g~a~~~l~~~~~A~~~l~~al~l~P~n~~~~~~l~~l~~~~~  315 (365)
                      +.+.|.++++.|+|++|+..|+++|+++|.++.+|+.+|.||..+|+|++|+.+|++|++++|++..++..++.+...++
T Consensus         7 l~~~Gn~~~~~g~~~~Ai~~~~kal~~~p~~~~~~~~lg~~y~~~~~~~~Ai~~~~~al~l~p~~~~a~~~lg~~~~~l~   86 (201)
T d2c2la1           7 LKEQGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAHFFLGQCQLEME   86 (201)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSCTTCHHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHhHHHHHhhhhhhhhhhHHHHHHHHhCCCcHHHHHHHHHHHHHCC
Confidence            67899999999999999999999999999999999999999999999999999999999999999999999999999998


Q ss_pred             HHHHHHHHHHhcccCCCCC
Q 017811          316 AVYKKQKEIYKGIFGPRPE  334 (365)
Q Consensus       316 ~~~~~~k~~y~kmf~~~~~  334 (365)
                      ++.++... |++.+...|.
T Consensus        87 ~~~~A~~~-~~~al~l~p~  104 (201)
T d2c2la1          87 SYDEAIAN-LQRAYSLAKE  104 (201)
T ss_dssp             CHHHHHHH-HHHHHHHHHH
T ss_pred             CHHHHHHH-HHHHHHhCcc
Confidence            88877654 7777655443

>d1fcha_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.32  E-value=8e-12  Score=113.02  Aligned_cols=133  Identities=12%  Similarity=0.081  Sum_probs=115.4

Q ss_pred             hhhhhhhhhhHHHHHHHHHHHHHhhccchhhhhhhhHHHHHHHhhchhhhHHHHHHHHhcCHHHHHHHHHHHHhCCCCCH
Q 017811          188 DGNALFKEEKLEEAMQQYEMAIAYMGDDFMFQLFGKYRDMALAVKNPCHLNMAACLLKLKRYEEAIGQCSLVLGEDENNV  267 (365)
Q Consensus       188 ~G~~~~~~~~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~kl~~~~~A~~~~~~aL~~~p~n~  267 (365)
                      ....+...+.+.+|+..|.+++.+.|....               ..++.++|.++..+|++++|+..+++++..+|+++
T Consensus       142 ~~~~~~~~~~~~~a~~~~~~al~~~p~~~~---------------~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~  206 (323)
T d1fcha_         142 ILGSLLSDSLFLEVKELFLAAVRLDPTSID---------------PDVQCGLGVLFNLSGEYDKAVDCFTAALSVRPNDY  206 (323)
T ss_dssp             TTHHHHHHHHHHHHHHHHHHHHHHSTTSCC---------------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCH
T ss_pred             hHHHHHHhhHHHHHHHHHHHHHHHhhcccc---------------cccchhhHHHHHHHHHHhhhhcccccccccccccc
Confidence            344567788999999999999999887432               22488999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCCCcc
Q 017811          268 KALFRRGKARAELGQTDAAREDFLKAGKFAPEDKSIARELRLLAEHEKAVYKKQKEIYKGIFGPRPEPK  336 (365)
Q Consensus       268 ka~~~~g~a~~~l~~~~~A~~~l~~al~l~P~n~~~~~~l~~l~~~~~~~~~~~k~~y~kmf~~~~~~~  336 (365)
                      .+|+.+|.+|..+|++++|+..|+++++++|++..+...++.+....+++.++ ...|.+.++..|+..
T Consensus       207 ~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A-~~~~~~al~l~p~~~  274 (323)
T d1fcha_         207 LLWNKLGATLANGNQSEEAVAAYRRALELQPGYIRSRYNLGISCINLGAHREA-VEHFLEALNMQRKSR  274 (323)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHH-HHHHHHHHHHHHTC-
T ss_pred             cchhhhhhcccccccchhHHHHHHHHHHHhhccHHHHHHHHHHHHHCCCHHHH-HHHHHHHHHhCCcCh
Confidence            99999999999999999999999999999999999999999999988887755 455888877655543

>d2ff4a2 a.118.8.3 (A:105-283) Probable regulatory protein EmbR, middle domain {Mycobacterium tuberculosis [TaxId: 1773]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: BTAD-like
domain: Probable regulatory protein EmbR, middle domain
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=99.30  E-value=4.1e-11  Score=100.14  Aligned_cols=121  Identities=13%  Similarity=0.050  Sum_probs=105.2

Q ss_pred             HHHHHHhhhhhhhhhhhhhHHHHHHHHHHHHHhhccchhhhh-----hhhHHHHHHHhhchhhhHHHHHHHHhcCHHHHH
Q 017811          179 IGAADRRKMDGNALFKEEKLEEAMQQYEMAIAYMGDDFMFQL-----FGKYRDMALAVKNPCHLNMAACLLKLKRYEEAI  253 (365)
Q Consensus       179 ~~~a~~~k~~G~~~~~~~~y~~A~~~y~~al~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~nla~~~~kl~~~~~A~  253 (365)
                      +...+.+...|+.++..|++.+|+..|.+|+.+.+.+.....     .......+......++.+++.++..+|+|++|+
T Consensus         8 ~~~f~~~~~~g~~~~~~g~~e~A~~~~~~AL~l~rG~~l~~~~~~~w~~~~r~~l~~~~~~a~~~la~~~~~~g~~~~Al   87 (179)
T d2ff4a2           8 LGRFVAEKTAGVHAAAAGRFEQASRHLSAALREWRGPVLDDLRDFQFVEPFATALVEDKVLAHTAKAEAEIACGRASAVI   87 (179)
T ss_dssp             HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCSSTTGGGTTSTTHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred             HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCcccccccCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCchHHH
Confidence            456778899999999999999999999999999876532211     123455566777889999999999999999999


Q ss_pred             HHHHHHHhCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH-------HhhCCC
Q 017811          254 GQCSLVLGEDENNVKALFRRGKARAELGQTDAAREDFLKA-------GKFAPE  299 (365)
Q Consensus       254 ~~~~~aL~~~p~n~ka~~~~g~a~~~l~~~~~A~~~l~~a-------l~l~P~  299 (365)
                      .+|+++|.++|.+..+|..++.+|..+|++.+|+..|+++       +.++|.
T Consensus        88 ~~~~~al~~~P~~e~~~~~l~~al~~~Gr~~eAl~~y~~~~~~L~~eLG~~P~  140 (179)
T d2ff4a2          88 AELEALTFEHPYREPLWTQLITAYYLSDRQSDALGAYRRVKTTLADDLGIDPG  140 (179)
T ss_dssp             HHHHHHHHHSTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHSCCCC
T ss_pred             HHHHHHHHhCCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHhCCCcC
Confidence            9999999999999999999999999999999999999998       567776

>d1tjca_ a.118.8.1 (A:) Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Prolyl 4-hydroxylase alpha-1 subunit, P4HA1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.24  E-value=1.4e-11  Score=91.84  Aligned_cols=79  Identities=15%  Similarity=0.041  Sum_probs=72.6

Q ss_pred             hhHHHHHHHHhcCHHHHHHHHHHHHhCCCCC-------HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCcHHHHHHHH
Q 017811          236 HLNMAACLLKLKRYEEAIGQCSLVLGEDENN-------VKALFRRGKARAELGQTDAAREDFLKAGKFAPEDKSIARELR  308 (365)
Q Consensus       236 ~~nla~~~~kl~~~~~A~~~~~~aL~~~p~n-------~ka~~~~g~a~~~l~~~~~A~~~l~~al~l~P~n~~~~~~l~  308 (365)
                      ++++|.++++.|+|.+|+.++++||++.|.+       ..+|+++|.++..+|++++|+..|+++|+++|+++.+...+.
T Consensus         8 c~~lG~~~~~~g~y~~A~~~~~~Al~~~~~~~~~~~~~~~~l~~Lg~~~~~~g~~~~A~~~y~~aL~l~P~~~~a~~Nl~   87 (95)
T d1tjca_           8 SFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLELDPEHQRANGNLK   87 (95)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred             HHHHHHHHHHCCCHHHHHHHHHHHHHHHhhhhccCccHHHHHHHHhhHHHhcCChHHHHHHHHHHHHhCcCCHHHHHHHH
Confidence            7899999999999999999999999886543       679999999999999999999999999999999999999998


Q ss_pred             HHHHHH
Q 017811          309 LLAEHE  314 (365)
Q Consensus       309 ~l~~~~  314 (365)
                      .+...+
T Consensus        88 ~~~~~l   93 (95)
T d1tjca_          88 YFEYIM   93 (95)
T ss_dssp             HHHHHH
T ss_pred             HHHHHh
Confidence            876554

>d1elra_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Hop
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.14  E-value=5.1e-11  Score=93.81  Aligned_cols=97  Identities=15%  Similarity=0.124  Sum_probs=79.1

Q ss_pred             hhHHHHHHHHhcCHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCcHHHHHHHHH------
Q 017811          236 HLNMAACLLKLKRYEEAIGQCSLVLGEDENNVKALFRRGKARAELGQTDAAREDFLKAGKFAPEDKSIARELRL------  309 (365)
Q Consensus       236 ~~nla~~~~kl~~~~~A~~~~~~aL~~~p~n~ka~~~~g~a~~~l~~~~~A~~~l~~al~l~P~n~~~~~~l~~------  309 (365)
                      +-++|.+++..|+|++|+.+|+++|+++|+++.+++++|.+|..+|+|++|+.++.++++++|++......+..      
T Consensus         7 ~k~~G~~~~~~~~y~~Ai~~y~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~~~~~~~~~~~a~~~~~lg   86 (128)
T d1elra_           7 EKELGNDAYKKKDFDTALKHYDKAKELDPTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKAYARIG   86 (128)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHhHHHHHHHcCchHHHHHHHHHHHHhCcccHHHHHHHHHHHHHHH
Confidence            67999999999999999999999999999999999999999999999999999999999999988665554444      


Q ss_pred             -HHHHHHHHHHHHHHHHhcccCCCC
Q 017811          310 -LAEHEKAVYKKQKEIYKGIFGPRP  333 (365)
Q Consensus       310 -l~~~~~~~~~~~k~~y~kmf~~~~  333 (365)
                       +...++.+.++. ..|.+.+...+
T Consensus        87 ~~~~~~~~~~~A~-~~~~kal~~~~  110 (128)
T d1elra_          87 NSYFKEEKYKDAI-HFYNKSLAEHR  110 (128)
T ss_dssp             HHHHHTTCHHHHH-HHHHHHHHHCC
T ss_pred             HHHHHhCCHHHHH-HHHHHHHhcCC
Confidence             444444444333 44666654444

>d1ihga1 a.118.8.1 (A:197-365) Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Cyclophilin 40
species: Cow (Bos taurus) [TaxId: 9913]

Probab=99.05  E-value=3.4e-10  Score=93.23  Aligned_cols=91  Identities=12%  Similarity=0.016  Sum_probs=82.1

Q ss_pred             HHHHHhhhhhhhhhhhhhHHHHHHHHHHHHHhhccchhhhhhhhHHHHHHHhhchhhhHHHHHHHHhcCHHHHHHHHHHH
Q 017811          180 GAADRRKMDGNALFKEEKLEEAMQQYEMAIAYMGDDFMFQLFGKYRDMALAVKNPCHLNMAACLLKLKRYEEAIGQCSLV  259 (365)
Q Consensus       180 ~~a~~~k~~G~~~~~~~~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~kl~~~~~A~~~~~~a  259 (365)
                      ..+..+..+|..+++.|+|.+|+..|++||++.|.+..                 +|+++|.||..+|+|++|+.++.++
T Consensus        75 ~~~~~~~nla~~~~~~~~~~~Ai~~~~~al~~~p~~~~-----------------a~~~~g~~~~~l~~~~~A~~~~~~a  137 (169)
T d1ihga1          75 VALSCVLNIGACKLKMSDWQGAVDSCLEALEIDPSNTK-----------------ALYRRAQGWQGLKEYDQALADLKKA  137 (169)
T ss_dssp             HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTCHH-----------------HHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred             hhHHHHHHHHHHHHhhcccchhhhhhhhhhhhhhhhhh-----------------HHHhHHHHHHHccCHHHHHHHHHHH
Confidence            45667778999999999999999999999999998643                 5999999999999999999999999


Q ss_pred             HhCCCCCHHHHHHHHHHHHHcCCHHHHH
Q 017811          260 LGEDENNVKALFRRGKARAELGQTDAAR  287 (365)
Q Consensus       260 L~~~p~n~ka~~~~g~a~~~l~~~~~A~  287 (365)
                      ++++|+|..++..++.++..+..+.++.
T Consensus       138 l~l~p~n~~~~~~l~~~~~~l~~~~~~~  165 (169)
T d1ihga1         138 QEIAPEDKAIQAELLKVKQKIKAQKDKE  165 (169)
T ss_dssp             HHHCTTCHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHhCCCCHHHHHHHHHHHHHHHHHHHHH
Confidence            9999999999999999998887776654

>d1kt1a1 a.118.8.1 (A:254-421) FKBP51, C-terminal domain {Monkey (Saimiri boliviensis) [TaxId: 27679]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: FKBP51, C-terminal domain
species: Monkey (Saimiri boliviensis) [TaxId: 27679]

Probab=99.02  E-value=1e-09  Score=90.28  Aligned_cols=88  Identities=13%  Similarity=0.060  Sum_probs=78.1

Q ss_pred             HHHHhhhhhhhhhhhhhHHHHHHHHHHHHHhhccchhhhhhhhHHHHHHHhhchhhhHHHHHHHHhcCHHHHHHHHHHHH
Q 017811          181 AADRRKMDGNALFKEEKLEEAMQQYEMAIAYMGDDFMFQLFGKYRDMALAVKNPCHLNMAACLLKLKRYEEAIGQCSLVL  260 (365)
Q Consensus       181 ~a~~~k~~G~~~~~~~~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~kl~~~~~A~~~~~~aL  260 (365)
                      .+..+.++|.++++.++|.+|+..|++||.+.|.+.                 .+++++|.||..+|+|++|+.+|.+++
T Consensus        63 ~~~~~~Nla~~~~~l~~~~~Ai~~~~~al~l~p~~~-----------------~a~~~~~~~~~~l~~~~~A~~~~~~al  125 (168)
T d1kt1a1          63 LLAAFLNLAMCYLKLREYTKAVECCDKALGLDSANE-----------------KGLYRRGEAQLLMNEFESAKGDFEKVL  125 (168)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCH-----------------HHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred             HHHHHHhHHHHHHHhhhcccchhhhhhhhhcccchH-----------------HHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence            445677899999999999999999999999999864                 359999999999999999999999999


Q ss_pred             hCCCCCHHHHHHHHHHHHHcCCHHH
Q 017811          261 GEDENNVKALFRRGKARAELGQTDA  285 (365)
Q Consensus       261 ~~~p~n~ka~~~~g~a~~~l~~~~~  285 (365)
                      .++|+|..++..++.+...++.+.+
T Consensus       126 ~l~P~n~~~~~~l~~~~~~~~~~~e  150 (168)
T d1kt1a1         126 EVNPQNKAARLQIFMCQKKAKEHNE  150 (168)
T ss_dssp             HSCTTCHHHHHHHHHHHHHHHHHHH
T ss_pred             HhCCCCHHHHHHHHHHHHHHHhHHH
Confidence            9999999999998888766665544

>d1ya0a1 a.118.8.1 (A:1-497) SMG-7 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: SMG-7
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.00  E-value=8.3e-10  Score=106.68  Aligned_cols=112  Identities=7%  Similarity=-0.034  Sum_probs=80.2

Q ss_pred             HHHhhhhhhhhhhhhhHHHHHHHHHHHHHhhccchhhhhhhhHHHHHHHhhchhhhHHHHHHHHhcCHHHHHHHHHHHHh
Q 017811          182 ADRRKMDGNALFKEEKLEEAMQQYEMAIAYMGDDFMFQLFGKYRDMALAVKNPCHLNMAACLLKLKRYEEAIGQCSLVLG  261 (365)
Q Consensus       182 a~~~k~~G~~~~~~~~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~kl~~~~~A~~~~~~aL~  261 (365)
                      +..+...|..+.+.+++..|+..|.+++...+.                   .++.++|.++...++|++|+.+|.+|+.
T Consensus       120 ~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~-------------------~~~~~LG~l~~~~~~~~~A~~~y~~A~~  180 (497)
T d1ya0a1         120 RVKSSQLGIISNKQTHTSAIVKPQSSSCSYICQ-------------------HCLVHLGDIARYRNQTSQAESYYRHAAQ  180 (497)
T ss_dssp             -----------------------CCHHHHHHHH-------------------HHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHhHHHHHhCCCHHHHHHHHHHHhCCCHH-------------------HHHHHHHHHHHHcccHHHHHHHHHHHHH
Confidence            334455566666666666666666666655432                   3589999999999999999999999999


Q ss_pred             CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHH
Q 017811          262 EDENNVKALFRRGKARAELGQTDAAREDFLKAGKFAPEDKSIARELRLLAE  312 (365)
Q Consensus       262 ~~p~n~ka~~~~g~a~~~l~~~~~A~~~l~~al~l~P~n~~~~~~l~~l~~  312 (365)
                      ++|++..+|+.+|.++...|++.+|+.+|.+|+.++|..+.++..|..+..
T Consensus       181 l~P~~~~~~~~Lg~~~~~~~~~~~A~~~y~ral~~~~~~~~a~~nL~~~~~  231 (497)
T d1ya0a1         181 LVPSNGQPYNQLAILASSKGDHLTTIFYYCRSIAVKFPFPAASTNLQKALS  231 (497)
T ss_dssp             HCTTBSHHHHHHHHHHHHTTCHHHHHHHHHHHHSSSBCCHHHHHHHHHHHH
T ss_pred             HCCCchHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCHHHHHHHHHHHH
Confidence            999999999999999999999999999999999999999999999887643

>d1p5qa1 a.118.8.1 (A:258-427) FKBP52 (FKBP4), C-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: FKBP52 (FKBP4), C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.00  E-value=1.1e-09  Score=90.39  Aligned_cols=90  Identities=13%  Similarity=0.033  Sum_probs=81.1

Q ss_pred             HHHHhhhhhhhhhhhhhHHHHHHHHHHHHHhhccchhhhhhhhHHHHHHHhhchhhhHHHHHHHHhcCHHHHHHHHHHHH
Q 017811          181 AADRRKMDGNALFKEEKLEEAMQQYEMAIAYMGDDFMFQLFGKYRDMALAVKNPCHLNMAACLLKLKRYEEAIGQCSLVL  260 (365)
Q Consensus       181 ~a~~~k~~G~~~~~~~~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~kl~~~~~A~~~~~~aL  260 (365)
                      .+..+...|.++++.|+|.+|+..|++||.+.|.+..                 +++++|.||..+|+|++|+.+|.+++
T Consensus        61 ~~~~~~nla~~y~k~~~~~~A~~~~~~al~~~p~~~~-----------------a~~~~g~~~~~~g~~~~A~~~~~~al  123 (170)
T d1p5qa1          61 RLASHLNLAMCHLKLQAFSAAIESCNKALELDSNNEK-----------------GLSRRGEAHLAVNDFELARADFQKVL  123 (170)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHH-----------------HHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhhhhcccccchhhhhhhccccchh-----------------hhHHHHHHHHHhhhHHHHHHHHHHHH
Confidence            3445677999999999999999999999999998643                 59999999999999999999999999


Q ss_pred             hCCCCCHHHHHHHHHHHHHcCCHHHHH
Q 017811          261 GEDENNVKALFRRGKARAELGQTDAAR  287 (365)
Q Consensus       261 ~~~p~n~ka~~~~g~a~~~l~~~~~A~  287 (365)
                      +++|+|+.+...++.++..+.++.+..
T Consensus       124 ~l~P~n~~~~~~l~~~~~~~~~~~~~e  150 (170)
T d1p5qa1         124 QLYPNNKAAKTQLAVCQQRIRRQLARE  150 (170)
T ss_dssp             HHCSSCHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HhCCCCHHHHHHHHHHHHHHHHHHHHH
Confidence            999999999999999988887776654

>d1qqea_ a.118.8.1 (A:) Vesicular transport protein sec17 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Vesicular transport protein sec17
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.00  E-value=1.6e-09  Score=96.84  Aligned_cols=143  Identities=13%  Similarity=0.054  Sum_probs=110.9

Q ss_pred             HHHHHhhhhhhhhhhhhhHHHHHHHHHHHHHhhccchhhhhhhhHHHHHHHhhchhhhHHHHHHHHhcCHHHHHHHHHHH
Q 017811          180 GAADRRKMDGNALFKEEKLEEAMQQYEMAIAYMGDDFMFQLFGKYRDMALAVKNPCHLNMAACLLKLKRYEEAIGQCSLV  259 (365)
Q Consensus       180 ~~a~~~k~~G~~~~~~~~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~kl~~~~~A~~~~~~a  259 (365)
                      +.+..+...|+.+...++|++|+..|.+|+++.......           .-...+|.|+|.||.++|++++|+.+++++
T Consensus        35 ~Aa~~y~~aa~~y~~~~~~~~A~~~y~kA~~~~~~~~~~-----------~~~a~~~~~~g~~y~~~~~~~~A~~~~~~a  103 (290)
T d1qqea_          35 EAADLCVQAATIYRLRKELNLAGDSFLKAADYQKKAGNE-----------DEAGNTYVEAYKCFKSGGNSVNAVDSLENA  103 (290)
T ss_dssp             HHHHHHHHHHHHHHHTTCTHHHHHHHHHHHHHHHHTTCH-----------HHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHcCCC-----------HHHHHHHHHHHHHHHHhCCcHHHHHHHHHh
Confidence            456678889999999999999999999999986432110           012457999999999999999999999999


Q ss_pred             HhCCCCC------HHHHHHHHHHHHH-cCCHHHHHHHHHHHHhhCCCc------HHHHHHHHHHHHHHHHHHHHHHHHHh
Q 017811          260 LGEDENN------VKALFRRGKARAE-LGQTDAAREDFLKAGKFAPED------KSIARELRLLAEHEKAVYKKQKEIYK  326 (365)
Q Consensus       260 L~~~p~n------~ka~~~~g~a~~~-l~~~~~A~~~l~~al~l~P~n------~~~~~~l~~l~~~~~~~~~~~k~~y~  326 (365)
                      +++.+.+      ..++.++|.+|.. ++++++|+..|++|+.+.+.+      ..+...++.+...++++.++.. .|.
T Consensus       104 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~A~~l~~~~~~~~~~~~~~~~la~~~~~~g~y~~A~~-~~~  182 (290)
T d1qqea_         104 IQIFTHRGQFRRGANFKFELGEILENDLHDYAKAIDCYELAGEWYAQDQSVALSNKCFIKCADLKALDGQYIEASD-IYS  182 (290)
T ss_dssp             HHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHH-HHH
T ss_pred             hHHhhhcccchhHHHHHHHHHHhHhhHHHHHHHHHHHHHHHHHHHHhcCchhhhhhHHHHHHHHHHHcChHHHHHH-HHH
Confidence            9887655      6789999999865 799999999999999885432      3445667777777777765554 477


Q ss_pred             cccCCCCC
Q 017811          327 GIFGPRPE  334 (365)
Q Consensus       327 kmf~~~~~  334 (365)
                      ++....+.
T Consensus       183 ~~~~~~~~  190 (290)
T d1qqea_         183 KLIKSSMG  190 (290)
T ss_dssp             HHHHTTSS
T ss_pred             HHHHhCcc
Confidence            76554443

>d1zu2a1 a.118.8.1 (A:1-145) Mitochondrial import receptor subunit tom20-3 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Mitochondrial import receptor subunit tom20-3
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=98.96  E-value=1e-09  Score=88.18  Aligned_cols=101  Identities=12%  Similarity=0.094  Sum_probs=84.9

Q ss_pred             HHHHhcCHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHc----------CCHHHHHHHHHHHHhhCCCcHHHHHHHHHHH
Q 017811          242 CLLKLKRYEEAIGQCSLVLGEDENNVKALFRRGKARAEL----------GQTDAAREDFLKAGKFAPEDKSIARELRLLA  311 (365)
Q Consensus       242 ~~~kl~~~~~A~~~~~~aL~~~p~n~ka~~~~g~a~~~l----------~~~~~A~~~l~~al~l~P~n~~~~~~l~~l~  311 (365)
                      .|-+++.|++|+..++++++++|+|+.+++++|.++..+          +.+++|+..|++|++++|++..+...++.+.
T Consensus         6 ~~~r~~~fe~A~~~~e~al~~~P~~~~~~~~~g~~l~~~~~~~~~~e~~~~~~~Ai~~~~kAl~l~P~~~~a~~~lG~~y   85 (145)
T d1zu2a1           6 EFDRILLFEQIRQDAENTYKSNPLDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLIDPKKDEAVWCIGNAY   85 (145)
T ss_dssp             SHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred             HHHHHccHHHHHHHHHHHHhhCCcchHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHhcchhhHHHhhHHHHH
Confidence            456788899999999999999999999999999999865          4568999999999999999999999999887


Q ss_pred             HHHHH----------HHHHHHHHHhcccCCCCCccccchhH
Q 017811          312 EHEKA----------VYKKQKEIYKGIFGPRPEPKQKKNWL  342 (365)
Q Consensus       312 ~~~~~----------~~~~~k~~y~kmf~~~~~~~~~~~~~  342 (365)
                      ..+.+          .-......|.+.+...|++.....-+
T Consensus        86 ~~~g~~~~~~~~~~~~~~~A~~~~~kal~l~P~~~~~~~~L  126 (145)
T d1zu2a1          86 TSFAFLTPDETEAKHNFDLATQFFQQAVDEQPDNTHYLKSL  126 (145)
T ss_dssp             HHHHHHCCCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred             HHcccchhhHHHHHHhHHHhhhhhhcccccCCCHHHHHHHH
Confidence            66542          34566778999999998776554333

>d2fbna1 a.118.8.1 (A:22-174) Putative 70 kda peptidylprolyl isomerase PFL2275c {Plasmodium falciparum [TaxId: 5833]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Putative 70 kda peptidylprolyl isomerase PFL2275c
species: Plasmodium falciparum [TaxId: 5833]

Probab=98.95  E-value=1.4e-09  Score=88.01  Aligned_cols=84  Identities=10%  Similarity=0.001  Sum_probs=75.9

Q ss_pred             HHHHhhhhhhhhhhhhhHHHHHHHHHHHHHhhccchhhhhhhhHHHHHHHhhchhhhHHHHHHHHhcCHHHHHHHHHHHH
Q 017811          181 AADRRKMDGNALFKEEKLEEAMQQYEMAIAYMGDDFMFQLFGKYRDMALAVKNPCHLNMAACLLKLKRYEEAIGQCSLVL  260 (365)
Q Consensus       181 ~a~~~k~~G~~~~~~~~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~kl~~~~~A~~~~~~aL  260 (365)
                      .+..+.++|..+++.|+|.+|+..|++||.+.|.+.                 .+|+++|.||..+|+|++|+.+|.+++
T Consensus        66 ~~~~~~Nla~~~~~l~~~~~Al~~~~~al~~~p~~~-----------------ka~~~~g~~~~~lg~~~~A~~~~~~al  128 (153)
T d2fbna1          66 EISCNLNLATCYNKNKDYPKAIDHASKVLKIDKNNV-----------------KALYKLGVANMYFGFLEEAKENLYKAA  128 (153)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCH-----------------HHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred             HHHHHhhHHHHHHHhcccchhhhhhhccccccchhh-----------------hhhHHhHHHHHHcCCHHHHHHHHHHHH
Confidence            345677899999999999999999999999999863                 469999999999999999999999999


Q ss_pred             hCCCCCHHHHHHHHHHHHHcC
Q 017811          261 GEDENNVKALFRRGKARAELG  281 (365)
Q Consensus       261 ~~~p~n~ka~~~~g~a~~~l~  281 (365)
                      +++|+|..+...++.+...+.
T Consensus       129 ~l~P~n~~~~~~l~~~~~kl~  149 (153)
T d2fbna1         129 SLNPNNLDIRNSYELCVNKLK  149 (153)
T ss_dssp             HHSTTCHHHHHHHHHHHHHHH
T ss_pred             HhCCCCHHHHHHHHHHHHHHH
Confidence            999999999999888876654

>d1nzna_ a.118.8.1 (A:) Mitochondria fission protein Fis1 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Mitochondria fission protein Fis1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.91  E-value=7.2e-10  Score=86.35  Aligned_cols=106  Identities=8%  Similarity=-0.029  Sum_probs=90.8

Q ss_pred             hHHHHHHHHhcCHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHc---CCHHHHHHHHHHHHhhCCCc--HHHHHHHHHHH
Q 017811          237 LNMAACLLKLKRYEEAIGQCSLVLGEDENNVKALFRRGKARAEL---GQTDAAREDFLKAGKFAPED--KSIARELRLLA  311 (365)
Q Consensus       237 ~nla~~~~kl~~~~~A~~~~~~aL~~~p~n~ka~~~~g~a~~~l---~~~~~A~~~l~~al~l~P~n--~~~~~~l~~l~  311 (365)
                      .+++..+..++++++|...|+++|.++|.++.++|++|.+++..   +++.+|+..|++++..+|++  ..+...++.+.
T Consensus         3 ~~l~n~~~~~~~l~~Ae~~Y~~aL~~~p~~~~~~~n~a~~L~~s~~~~d~~~Ai~~l~~~l~~~~~~~~~~~~~~Lg~~y   82 (122)
T d1nzna_           3 EAVLNELVSVEDLLKFEKKFQSEKAAGSVSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGN   82 (122)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHHHH
T ss_pred             HHHHHHhcCHHHHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHhccCCchHHHHHHHHHHHH
Confidence            46778899999999999999999999999999999999999874   45667999999999999876  35788999999


Q ss_pred             HHHHHHHHHHHHHHhcccCCCCCccccchhHH
Q 017811          312 EHEKAVYKKQKEIYKGIFGPRPEPKQKKNWLI  343 (365)
Q Consensus       312 ~~~~~~~~~~k~~y~kmf~~~~~~~~~~~~~~  343 (365)
                      ..++++.++. +.|.+++...|+..+....+.
T Consensus        83 ~~~g~~~~A~-~~~~~aL~~~P~~~~A~~l~~  113 (122)
T d1nzna_          83 YRLKEYEKAL-KYVRGLLQTEPQNNQAKELER  113 (122)
T ss_dssp             HHTTCHHHHH-HHHHHHHHHCTTCHHHHHHHH
T ss_pred             HHHhhhHHHH-HHHHHHHHhCcCCHHHHHHHH
Confidence            9888887665 559999999998877655443

>d1dcea1 a.118.6.1 (A:1-241,A:351-443) Rab geranylgeranyltransferase alpha-subunit, N-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Protein prenylyltransferase
family: Protein prenylyltransferase
domain: Rab geranylgeranyltransferase alpha-subunit, N-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=98.87  E-value=3.1e-08  Score=89.78  Aligned_cols=133  Identities=7%  Similarity=-0.157  Sum_probs=82.9

Q ss_pred             hHHHHHHHHHHHHHhhccchhhhhhhhHHHHHHHhhchhhhHHHHHHHHhcCHHHHHHHHHHHHhCCCCCHHHHHHHHHH
Q 017811          197 KLEEAMQQYEMAIAYMGDDFMFQLFGKYRDMALAVKNPCHLNMAACLLKLKRYEEAIGQCSLVLGEDENNVKALFRRGKA  276 (365)
Q Consensus       197 ~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~kl~~~~~A~~~~~~aL~~~p~n~ka~~~~g~a  276 (365)
                      .+++|+..|.++|..+|++...=.      . .......+.+.+.++...+++.+|+.+++++++.+|.+..+++.+|.+
T Consensus        44 ~~~~al~~~~~~l~~~P~~~~a~~------~-r~~~l~~l~~~~~~~~~~~~~~~al~~~~~~l~~~pk~~~~~~~~~~~  116 (334)
T d1dcea1          44 LDESVLELTSQILGANPDFATLWN------C-RREVLQHLETEKSPEESAALVKAELGFLESCLRVNPKSYGTWHHRCWL  116 (334)
T ss_dssp             CSHHHHHHHHHHHHHCTTCHHHHH------H-HHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred             ccHHHHHHHHHHHHHCCCcHHHHH------H-HHHHHHHHhhhcchHHHHHHHHHHHHHHHHHHHhCCCcHHHHHHhhHH
Confidence            348999999999999999754200      0 000001122233334444557778888888888888888888877777


Q ss_pred             HHHcCC--HHHHHHHHHHHHhhCCCcHHHHHH-HHHHHHHHHHHHHHHHHHHhcccCCCCCccc
Q 017811          277 RAELGQ--TDAAREDFLKAGKFAPEDKSIARE-LRLLAEHEKAVYKKQKEIYKGIFGPRPEPKQ  337 (365)
Q Consensus       277 ~~~l~~--~~~A~~~l~~al~l~P~n~~~~~~-l~~l~~~~~~~~~~~k~~y~kmf~~~~~~~~  337 (365)
                      +..+++  +++|+..+++++.++|++..+... +..+....+.. +..-..+.+++...|....
T Consensus       117 ~~~~~~~~~~~a~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~-~~Al~~~~~~i~~~p~~~~  179 (334)
T d1dcea1         117 LSRLPEPNWARELELCARFLEADERNFHCWDYRRFVAAQAAVAP-AEELAFTDSLITRNFSNYS  179 (334)
T ss_dssp             HHTCSSCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTCCCH-HHHHHHHHTTTTTTCCCHH
T ss_pred             HHHhccccHHHHHHHHHHHHhhCchhhhhhhhHHHHHHHhcccc-HHHHHHHHHHHHcCCCCHH
Confidence            777664  677777888888887777666543 33443333333 3344557777777765443

>d1dcea1 a.118.6.1 (A:1-241,A:351-443) Rab geranylgeranyltransferase alpha-subunit, N-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Protein prenylyltransferase
family: Protein prenylyltransferase
domain: Rab geranylgeranyltransferase alpha-subunit, N-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=98.85  E-value=1.7e-08  Score=91.55  Aligned_cols=119  Identities=11%  Similarity=0.004  Sum_probs=103.8

Q ss_pred             HHHHhhhhhhhhhhhhhHHHHHHHHHHHHHhhccchhhhhhhhHHHHHHHhhchhhhHHHHHHHHhcC--HHHHHHHHHH
Q 017811          181 AADRRKMDGNALFKEEKLEEAMQQYEMAIAYMGDDFMFQLFGKYRDMALAVKNPCHLNMAACLLKLKR--YEEAIGQCSL  258 (365)
Q Consensus       181 ~a~~~k~~G~~~~~~~~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~kl~~--~~~A~~~~~~  258 (365)
                      ....+...+..+...+++.+|+..|++++...|.+..                 +++++|.++..+++  +.+|+..+.+
T Consensus        72 ~l~~l~~~~~~~~~~~~~~~al~~~~~~l~~~pk~~~-----------------~~~~~~~~~~~~~~~~~~~a~~~~~~  134 (334)
T d1dcea1          72 VLQHLETEKSPEESAALVKAELGFLESCLRVNPKSYG-----------------TWHHRCWLLSRLPEPNWARELELCAR  134 (334)
T ss_dssp             HHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHCTTCHH-----------------HHHHHHHHHHTCSSCCHHHHHHHHHH
T ss_pred             HHHHHhhhcchHHHHHHHHHHHHHHHHHHHhCCCcHH-----------------HHHHhhHHHHHhccccHHHHHHHHHH
Confidence            3455667788888999999999999999999998754                 38899999888875  8999999999


Q ss_pred             HHhCCCCCHHHH-HHHHHHHHHcCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHHHH
Q 017811          259 VLGEDENNVKAL-FRRGKARAELGQTDAAREDFLKAGKFAPEDKSIARELRLLAEHEKA  316 (365)
Q Consensus       259 aL~~~p~n~ka~-~~~g~a~~~l~~~~~A~~~l~~al~l~P~n~~~~~~l~~l~~~~~~  316 (365)
                      +++++|.+..++ +.+|.++...+.+++|+..+++++.++|+|..+...++.+...+++
T Consensus       135 al~~~~~~~~~~~~~~~~~~~~~~~~~~Al~~~~~~i~~~p~~~~a~~~l~~~~~~~~~  193 (334)
T d1dcea1         135 FLEADERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNFSNYSSWHYRSCLLPQLHP  193 (334)
T ss_dssp             HHHHCTTCHHHHHHHHHHHHHTCCCHHHHHHHHHTTTTTTCCCHHHHHHHHHHHHHHSC
T ss_pred             HHhhCchhhhhhhhHHHHHHHhccccHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhcC
Confidence            999999999986 5788999999999999999999999999999999998888766543

>d1qqea_ a.118.8.1 (A:) Vesicular transport protein sec17 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Vesicular transport protein sec17
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=98.84  E-value=1.7e-08  Score=90.04  Aligned_cols=145  Identities=14%  Similarity=0.027  Sum_probs=106.4

Q ss_pred             HHHHHhhhhhhhhhhhhhHHHHHHHHHHHHHhhccchhhhhhhhHHHHHHHhhchhhhHHHHHHHH-hcCHHHHHHHHHH
Q 017811          180 GAADRRKMDGNALFKEEKLEEAMQQYEMAIAYMGDDFMFQLFGKYRDMALAVKNPCHLNMAACLLK-LKRYEEAIGQCSL  258 (365)
Q Consensus       180 ~~a~~~k~~G~~~~~~~~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~k-l~~~~~A~~~~~~  258 (365)
                      ..+..+.+.|+.+.+.|++.+|+..|++++.+.+.....           .....++.++|.+|.. +++|++|+..+.+
T Consensus        75 ~~a~~~~~~g~~y~~~~~~~~A~~~~~~a~~~~~~~~~~-----------~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~  143 (290)
T d1qqea_          75 EAGNTYVEAYKCFKSGGNSVNAVDSLENAIQIFTHRGQF-----------RRGANFKFELGEILENDLHDYAKAIDCYEL  143 (290)
T ss_dssp             HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCH-----------HHHHHHHHHHHHHHHHTTCCHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHhCCcHHHHHHHHHhhHHhhhcccc-----------hhHHHHHHHHHHhHhhHHHHHHHHHHHHHH
Confidence            456778899999999999999999999999998764221           1124468899988865 7999999999999


Q ss_pred             HHhCCCC------CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCcHHH-------HHHHHHHHHHHHHHHHHHHHHH
Q 017811          259 VLGEDEN------NVKALFRRGKARAELGQTDAAREDFLKAGKFAPEDKSI-------ARELRLLAEHEKAVYKKQKEIY  325 (365)
Q Consensus       259 aL~~~p~------n~ka~~~~g~a~~~l~~~~~A~~~l~~al~l~P~n~~~-------~~~l~~l~~~~~~~~~~~k~~y  325 (365)
                      ++++.+.      ...++.++|.++..+|+|++|+..|++++.+.|.+...       ......+.....+. ......+
T Consensus       144 A~~l~~~~~~~~~~~~~~~~la~~~~~~g~y~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~-~~A~~~~  222 (290)
T d1qqea_         144 AGEWYAQDQSVALSNKCFIKCADLKALDGQYIEASDIYSKLIKSSMGNRLSQWSLKDYFLKKGLCQLAATDA-VAAARTL  222 (290)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSCTTTGGGHHHHHHHHHHHHHHTTCH-HHHHHHH
T ss_pred             HHHHHHhcCchhhhhhHHHHHHHHHHHcChHHHHHHHHHHHHHhCccchhhhhhHHHHHHHHHHHHHHhccH-HHHHHHH
Confidence            9976432      25679999999999999999999999999998876422       22333343333333 3455668


Q ss_pred             hcccCCCCCcc
Q 017811          326 KGIFGPRPEPK  336 (365)
Q Consensus       326 ~kmf~~~~~~~  336 (365)
                      .+.....|.-.
T Consensus       223 ~~~~~~~~~~~  233 (290)
T d1qqea_         223 QEGQSEDPNFA  233 (290)
T ss_dssp             HGGGCC-----
T ss_pred             HHHHHhCCCcc
Confidence            88877766433

>d1l1pa_ d.26.1.1 (A:) Trigger factor PPIase domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a+b)
fold: FKBP-like
superfamily: FKBP-like
family: FKBP immunophilin/proline isomerase
domain: Trigger factor PPIase domain
species: Escherichia coli [TaxId: 562]

Probab=98.77  E-value=8.1e-09  Score=77.94  Aligned_cols=88  Identities=15%  Similarity=0.260  Sum_probs=72.1

Q ss_pred             CCCCCCEEEEEEEEEEcCCCeeeccCcCCCCcceeecCCCCchhhhHHHHHhcCCcCcEEEEEeccccccCCCCCCCCCC
Q 017811           66 KPSKYSTCFLHYRAWAESTRHKFDDTWLEQQPLEMVLGKEKKEMTGLAIGVSSMKAGEHALLHVGWELGYGKEGSFSFPN  145 (365)
Q Consensus        66 ~p~~g~~v~v~y~~~~~~~g~~fd~s~~~~~p~~f~lg~~~~~i~g~e~~l~~Mk~GE~~~~~i~~~~~yg~~g~~~~~~  145 (365)
                      ....||.|+|+|+++. + |..|++.  ..+.+.|.+|.+ .+++||+.+|.+|++||+..|.+.....|...       
T Consensus        14 ~a~~GD~v~id~~~~~-d-G~~~~~~--~~~~~~~~lg~~-~~~~gf~~~L~G~k~Ge~~~~~~~~P~d~~~~-------   81 (106)
T d1l1pa_          14 AVEAEDRVTIDFTGSV-D-GEEFEGG--KASDFVLAMGQG-RMIPGFEDGIKGHKAGEEFTIDVTFPEEYHAE-------   81 (106)
T ss_dssp             SCCTTEEEEEEEECCS-S-SSCCSTT--EEEEEEEEETTS-CCCTTHHHHTTSCCTTCCEEEEECCCSSCCCT-------
T ss_pred             cccCCCEEEEEEEEEE-C-CEECCCC--cccceEEEecCC-CccchHHHHhcCCCCCceEEEEEEeCCCCCch-------
Confidence            3467999999999875 4 8888654  245689999999 89999999999999999999999876666532       


Q ss_pred             CCCCCcEEEEEEEEeeecCc
Q 017811          146 VSPMADLVYEVVLIGFDETK  165 (365)
Q Consensus       146 ip~~~~l~~~iel~~~~~~~  165 (365)
                      --.|.++.|.|++..+....
T Consensus        82 ~laGK~v~f~V~v~~i~~~~  101 (106)
T d1l1pa_          82 NLKGKAAKFAINLKKVEERE  101 (106)
T ss_dssp             TTTTCCEEEEEEEEEEECCC
T ss_pred             hhCCCEEEEEEEEEEecccc
Confidence            23788999999999987653

>d1t11a3 d.26.1.1 (A:135-247) Trigger factor PPIase domain {Vibrio cholerae [TaxId: 666]}

class: Alpha and beta proteins (a+b)
fold: FKBP-like
superfamily: FKBP-like
family: FKBP immunophilin/proline isomerase
domain: Trigger factor PPIase domain
species: Vibrio cholerae [TaxId: 666]

Probab=98.68  E-value=5.9e-09  Score=79.76  Aligned_cols=87  Identities=9%  Similarity=0.192  Sum_probs=71.9

Q ss_pred             CCCCCCEEEEEEEEEEcCCCeeeccCcCCCCcceeecCCCCchhhhHHHHHhcCCcCcEEEEEeccccccCCCCCCCCCC
Q 017811           66 KPSKYSTCFLHYRAWAESTRHKFDDTWLEQQPLEMVLGKEKKEMTGLAIGVSSMKAGEHALLHVGWELGYGKEGSFSFPN  145 (365)
Q Consensus        66 ~p~~g~~v~v~y~~~~~~~g~~fd~s~~~~~p~~f~lg~~~~~i~g~e~~l~~Mk~GE~~~~~i~~~~~yg~~g~~~~~~  145 (365)
                      .+..||.|+|+|.++. + |..|++.  ....+.|.+|.+ .+++||+.+|.+|++||+..|.+.....|....      
T Consensus        23 ~a~~gD~v~id~~~~~-d-G~~~~~~--~~~~~~~~lg~~-~~~~~f~~~L~G~k~Ge~~~~~~~~Ped~~~~~------   91 (113)
T d1t11a3          23 AAENGKRVSIDFVGSI-D-GVEFEGG--KAENFPLEMGAG-RMIPGFEDGIVGKTKGMEFVIDVTFPEDYHAEN------   91 (113)
T ss_dssp             CCCTTCEEEEEEEEES-S-SSCCTTC--EEEEEEEETTSC-CBSTTSGGGTTTCCSSCCCCEEEECCTTCSCTT------
T ss_pred             cccCCCEEEEEEEEEE-C-CEEccCC--ccceEEEEeccc-cccccHHHhhcCCcCCCEEEEEEeCCCcCCccc------
Confidence            3678999999999986 4 8888764  345789999999 899999999999999999999988776665432      


Q ss_pred             CCCCCcEEEEEEEEeeecC
Q 017811          146 VSPMADLVYEVVLIGFDET  164 (365)
Q Consensus       146 ip~~~~l~~~iel~~~~~~  164 (365)
                       -.|.++.|.|++..+...
T Consensus        92 -laGk~~~f~v~v~~Ik~~  109 (113)
T d1t11a3          92 -LKGKAAKFAIKVNKVEAR  109 (113)
T ss_dssp             -TSSCEEEECCCEEEEEEE
T ss_pred             -cCCCeEEEEEEEEEEEec
Confidence             267899999999988754

>d2pqrb1 a.118.8.1 (B:5-128) Mitochondria fission protein Fis1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Mitochondria fission protein Fis1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=98.66  E-value=8.4e-08  Score=73.59  Aligned_cols=81  Identities=14%  Similarity=0.106  Sum_probs=71.9

Q ss_pred             hhhHHHHHHHHhc---CHHHHHHHHHHHHhCCCCCH-HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCcHHHHHHHHHH
Q 017811          235 CHLNMAACLLKLK---RYEEAIGQCSLVLGEDENNV-KALFRRGKARAELGQTDAAREDFLKAGKFAPEDKSIARELRLL  310 (365)
Q Consensus       235 ~~~nla~~~~kl~---~~~~A~~~~~~aL~~~p~n~-ka~~~~g~a~~~l~~~~~A~~~l~~al~l~P~n~~~~~~l~~l  310 (365)
                      ..+|.|.|+.+..   +..+++..++.++..+|.+. .++|.+|.+|+.+|+|++|+..+.++|+++|+|..+......+
T Consensus        37 t~F~YAw~Lv~S~~~~d~~~gI~lLe~~~~~~p~~~rd~lY~Lav~yyklgdy~~A~~~~~~~L~ieP~n~qA~~L~~~I  116 (124)
T d2pqrb1          37 SRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHERNNKQVGALKSMV  116 (124)
T ss_dssp             HHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred             hHHHHHHHHHcCCcHHHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHhhHHHHHHHHHHHHccCCCcHHHHHHHHHH
Confidence            4789999999764   56799999999999999775 7999999999999999999999999999999999998888777


Q ss_pred             HHHHH
Q 017811          311 AEHEK  315 (365)
Q Consensus       311 ~~~~~  315 (365)
                      ..++.
T Consensus       117 e~~~~  121 (124)
T d2pqrb1         117 EDKIQ  121 (124)
T ss_dssp             HHHHH
T ss_pred             HHHHh
Confidence            65543

>d1zbpa1 e.61.1.1 (A:2-265) Hypothetical protein VPA1032 {Vibrio parahaemolyticus [TaxId: 670]}

class: Multi-domain proteins (alpha and beta)
fold: ImpE-like
superfamily: ImpE-like
family: ImpE-like
domain: Hypothetical protein VPA1032
species: Vibrio parahaemolyticus [TaxId: 670]

Probab=98.63  E-value=1.1e-08  Score=90.35  Aligned_cols=129  Identities=13%  Similarity=-0.030  Sum_probs=96.3

Q ss_pred             hhhhhhhhhhHHHHHHHHHHHHHhhccchhhhhhhhHHHHHHHhhchhhhHHHHHHHHhcCHHHHHHHHHHHHhCCCCCH
Q 017811          188 DGNALFKEEKLEEAMQQYEMAIAYMGDDFMFQLFGKYRDMALAVKNPCHLNMAACLLKLKRYEEAIGQCSLVLGEDENNV  267 (365)
Q Consensus       188 ~G~~~~~~~~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~kl~~~~~A~~~~~~aL~~~p~n~  267 (365)
                      ++...++.|++++|+..|+++|+..|.+..                 ++.+++.+|...|+|++|+..++.+++++|++.
T Consensus         2 q~~~aL~~G~l~eAl~~l~~al~~~P~d~~-----------------ar~~La~lL~~~G~~e~A~~~l~~a~~l~P~~~   64 (264)
T d1zbpa1           2 QWKNALSEGQLQQALELLIEAIKASPKDAS-----------------LRSSFIELLCIDGDFERADEQLMQSIKLFPEYL   64 (264)
T ss_dssp             CHHHHTTTTCHHHHHHHHHHHHHTCTTCHH-----------------HHHHHHHHHHHHTCHHHHHHHHHHHHHHCGGGH
T ss_pred             hHHHHHHCCCHHHHHHHHHHHHHHCCCCHH-----------------HHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCcH
Confidence            456788999999999999999999999754                 499999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCcHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCCC
Q 017811          268 KALFRRGKARAELGQTDAAREDFLKAGKFA-PEDKSIARELRLLAEHEKAVYKKQKEIYKGIFGPRPE  334 (365)
Q Consensus       268 ka~~~~g~a~~~l~~~~~A~~~l~~al~l~-P~n~~~~~~l~~l~~~~~~~~~~~k~~y~kmf~~~~~  334 (365)
                      .++..++.++...+..+++...+.....+. |.+.........+....++.. .....+...+...|.
T Consensus        65 ~~~~~l~~ll~a~~~~~~a~~~~~~~~~~~~p~~~~~~l~~a~~~~~~gd~~-~A~~~~~~a~e~~p~  131 (264)
T d1zbpa1          65 PGASQLRHLVKAAQARKDFAQGAATAKVLGENEELTKSLVSFNLSMVSQDYE-QVSELALQIEELRQE  131 (264)
T ss_dssp             HHHHHHHHHHHHHHHHHHHTTSCCCEECCCSCHHHHHHHHHHHHHHHHTCHH-HHHHHHHHHHHHCCC
T ss_pred             HHHHHHHHHHHhccccHHHHHHhhhhhcccCchHHHHHHHHHHHHHhCCCHH-HHHHHHHHHHhcCCC
Confidence            999999999988888887776665544443 333333333333333333333 444446666555554

>d1ya0a1 a.118.8.1 (A:1-497) SMG-7 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: SMG-7
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.56  E-value=3.4e-08  Score=95.09  Aligned_cols=96  Identities=14%  Similarity=0.034  Sum_probs=63.8

Q ss_pred             hhhHHHHHHHHhcCHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHH
Q 017811          235 CHLNMAACLLKLKRYEEAIGQCSLVLGEDENNVKALFRRGKARAELGQTDAAREDFLKAGKFAPEDKSIARELRLLAEHE  314 (365)
Q Consensus       235 ~~~nla~~~~kl~~~~~A~~~~~~aL~~~p~n~ka~~~~g~a~~~l~~~~~A~~~l~~al~l~P~n~~~~~~l~~l~~~~  314 (365)
                      .+.|+|.++.+.+++.+|+..+.+++..+|  ..+++++|.++..+++|++|+.+|++|+.++|++..+...|+.+....
T Consensus       122 ~~~~lg~~~~~~~~~~~A~~~~~~al~~~~--~~~~~~LG~l~~~~~~~~~A~~~y~~A~~l~P~~~~~~~~Lg~~~~~~  199 (497)
T d1ya0a1         122 KSSQLGIISNKQTHTSAIVKPQSSSCSYIC--QHCLVHLGDIARYRNQTSQAESYYRHAAQLVPSNGQPYNQLAILASSK  199 (497)
T ss_dssp             ---------------------CCHHHHHHH--HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTBSHHHHHHHHHHHHT
T ss_pred             HHHHhHHHHHhCCCHHHHHHHHHHHhCCCH--HHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCchHHHHHHHHHHHHc
Confidence            488999999999999999999999998876  479999999999999999999999999999999999999999998877


Q ss_pred             HHHHHHHHHHHhcccCCCC
Q 017811          315 KAVYKKQKEIYKGIFGPRP  333 (365)
Q Consensus       315 ~~~~~~~k~~y~kmf~~~~  333 (365)
                      ++..++. ..|.+.+...+
T Consensus       200 ~~~~~A~-~~y~ral~~~~  217 (497)
T d1ya0a1         200 GDHLTTI-FYYCRSIAVKF  217 (497)
T ss_dssp             TCHHHHH-HHHHHHHSSSB
T ss_pred             CCHHHHH-HHHHHHHhCCC
Confidence            7766554 33555555444

>d1hz4a_ a.118.8.2 (A:) Transcription factor MalT domain III {Escherichia coli [TaxId: 562]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Transcription factor MalT domain III
domain: Transcription factor MalT domain III
species: Escherichia coli [TaxId: 562]

Probab=98.53  E-value=5.1e-07  Score=80.12  Aligned_cols=139  Identities=10%  Similarity=0.032  Sum_probs=104.5

Q ss_pred             HHHHHHhhhhhhhhhhhhhHHHHHHHHHHHHHhhccchhhhhhhhHHHHHHHhhchhhhHHHHHHHHhcCHHHHHHHHHH
Q 017811          179 IGAADRRKMDGNALFKEEKLEEAMQQYEMAIAYMGDDFMFQLFGKYRDMALAVKNPCHLNMAACLLKLKRYEEAIGQCSL  258 (365)
Q Consensus       179 ~~~a~~~k~~G~~~~~~~~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~kl~~~~~A~~~~~~  258 (365)
                      .-.++...-+|..++..|++++|+..|++|+...|.+...            ....++.++|.+|..+|++++|+..+.+
T Consensus         9 ~~~ae~~~lrA~~~~~~g~~~~A~~~~~~aL~~~~~~~~~------------~~~~a~~~lg~~~~~~g~~~~A~~~~~~   76 (366)
T d1hz4a_           9 TMHAEFNALRAQVAINDGNPDEAERLAKLALEELPPGWFY------------SRIVATSVLGEVLHCKGELTRSLALMQQ   76 (366)
T ss_dssp             HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCTTCHH------------HHHHHHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred             chhHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCcCCCcH------------HHHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence            3456666778999999999999999999999999875321            1244689999999999999999999999


Q ss_pred             HHhCCCCC------HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC--------cHHHHHHHHHHHHHHHHHHHHHHHH
Q 017811          259 VLGEDENN------VKALFRRGKARAELGQTDAAREDFLKAGKFAPE--------DKSIARELRLLAEHEKAVYKKQKEI  324 (365)
Q Consensus       259 aL~~~p~n------~ka~~~~g~a~~~l~~~~~A~~~l~~al~l~P~--------n~~~~~~l~~l~~~~~~~~~~~k~~  324 (365)
                      ++.+.+..      ..+++.++.++...+++..|...+.+++.+.+.        ...+...++.+.....+..... ..
T Consensus        77 a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~a~-~~  155 (366)
T d1hz4a_          77 TEQMARQHDVWHYALWSLIQQSEILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAE-AS  155 (366)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHHH-HH
T ss_pred             HHHHHHhhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhcccchhhHHHHHHHHHHHHHHHhcchhhhH-HH
Confidence            99865432      568899999999999999999999999986432        1234445555555544444333 33


Q ss_pred             HhcccC
Q 017811          325 YKGIFG  330 (365)
Q Consensus       325 y~kmf~  330 (365)
                      |.+.+.
T Consensus       156 ~~~~~~  161 (366)
T d1hz4a_         156 ARSGIE  161 (366)
T ss_dssp             HHHHHH
T ss_pred             HHHHHH
Confidence            554443

>d2hr2a1 a.118.8.8 (A:2-157) Hypothetical protein CT2138 {Chlorobium tepidum [TaxId: 1097]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: CT2138-like
domain: Hypothetical protein CT2138
species: Chlorobium tepidum [TaxId: 1097]

Probab=98.47  E-value=8.4e-08  Score=77.35  Aligned_cols=94  Identities=19%  Similarity=0.082  Sum_probs=73.9

Q ss_pred             hhHHHHHHHHhcCHHHHHHHHHHHHhCCCCC------------HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCc---
Q 017811          236 HLNMAACLLKLKRYEEAIGQCSLVLGEDENN------------VKALFRRGKARAELGQTDAAREDFLKAGKFAPED---  300 (365)
Q Consensus       236 ~~nla~~~~kl~~~~~A~~~~~~aL~~~p~n------------~ka~~~~g~a~~~l~~~~~A~~~l~~al~l~P~n---  300 (365)
                      ++..|..++..|+|++|+..|+++|++.|++            ..+|.++|.+|..+|+|++|+.++.+++.+.|.+   
T Consensus        12 ~l~~g~~~~~~g~y~~Ai~~y~~Al~i~~~~~~~~~~~~~~~~a~~~~nlg~~~~~lg~~~~A~~~~~~al~~~~~~~~~   91 (156)
T d2hr2a1          12 ALSDAQRQLVAGEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALHYFNRRGEL   91 (156)
T ss_dssp             HHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHCCT
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHhChhhhhhhhcccchhHHHHHHHHHHHHHHcCccchhhHhhhhhhhcccccccc
Confidence            3444888999999999999999999988764            3689999999999999999999999999876531   


Q ss_pred             --------HHHHHHHHHHHHHHHHHHHHHHHHHhcccC
Q 017811          301 --------KSIARELRLLAEHEKAVYKKQKEIYKGIFG  330 (365)
Q Consensus       301 --------~~~~~~l~~l~~~~~~~~~~~k~~y~kmf~  330 (365)
                              ..+...++.+...+++++++... |.+.+.
T Consensus        92 ~~~~~~~~~~a~~~~g~~~~~lg~~eeA~~~-~~~Al~  128 (156)
T d2hr2a1          92 NQDEGKLWISAVYSRALALDGLGRGAEAMPE-FKKVVE  128 (156)
T ss_dssp             TSTHHHHHHHHHHHHHHHHHHTTCHHHHHHH-HHHHHH
T ss_pred             cccccchhHHHHhhhHHHHHHHHHHHHHHHH-HHHHHH
Confidence                    22455677777777776655444 666544

>d2ff4a2 a.118.8.3 (A:105-283) Probable regulatory protein EmbR, middle domain {Mycobacterium tuberculosis [TaxId: 1773]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: BTAD-like
domain: Probable regulatory protein EmbR, middle domain
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=98.43  E-value=7e-07  Score=73.70  Aligned_cols=101  Identities=17%  Similarity=0.134  Sum_probs=85.8

Q ss_pred             hhhHHHHHHHHhcCHHHHHHHHHHHHhCCCCC----------------------HHHHHHHHHHHHHcCCHHHHHHHHHH
Q 017811          235 CHLNMAACLLKLKRYEEAIGQCSLVLGEDENN----------------------VKALFRRGKARAELGQTDAAREDFLK  292 (365)
Q Consensus       235 ~~~nla~~~~kl~~~~~A~~~~~~aL~~~p~n----------------------~ka~~~~g~a~~~l~~~~~A~~~l~~  292 (365)
                      .+.+.|......|++++|+..|.+||.+.+..                      ..++..++.++..+|++++|+.++++
T Consensus        13 ~~~~~g~~~~~~g~~e~A~~~~~~AL~l~rG~~l~~~~~~~w~~~~r~~l~~~~~~a~~~la~~~~~~g~~~~Al~~~~~   92 (179)
T d2ff4a2          13 AEKTAGVHAAAAGRFEQASRHLSAALREWRGPVLDDLRDFQFVEPFATALVEDKVLAHTAKAEAEIACGRASAVIAELEA   92 (179)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHTTCCSSTTGGGTTSTTHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred             HHHHHHHHHHHCCCHHHHHHHHHHHHhhCcccccccCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCchHHHHHHHH
Confidence            37899999999999999999999999997643                      25889999999999999999999999


Q ss_pred             HHhhCCCcHHHHHHHHHHHHHHHHHHHHHHHHHhcc-------cCCCCCcc
Q 017811          293 AGKFAPEDKSIARELRLLAEHEKAVYKKQKEIYKGI-------FGPRPEPK  336 (365)
Q Consensus       293 al~l~P~n~~~~~~l~~l~~~~~~~~~~~k~~y~km-------f~~~~~~~  336 (365)
                      ++.++|.+..++..+..+....++..+..+. |..+       |+..|...
T Consensus        93 al~~~P~~e~~~~~l~~al~~~Gr~~eAl~~-y~~~~~~L~~eLG~~P~~~  142 (179)
T d2ff4a2          93 LTFEHPYREPLWTQLITAYYLSDRQSDALGA-YRRVKTTLADDLGIDPGPT  142 (179)
T ss_dssp             HHHHSTTCHHHHHHHHHHHHTTTCHHHHHHH-HHHHHHHHHHHHSCCCCHH
T ss_pred             HHHhCCccHHHHHHHHHHHHHhcCHHHHHHH-HHHHHHHHHHHhCCCcCHH
Confidence            9999999999999999888877766655443 5544       77777543

>d1hz4a_ a.118.8.2 (A:) Transcription factor MalT domain III {Escherichia coli [TaxId: 562]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Transcription factor MalT domain III
domain: Transcription factor MalT domain III
species: Escherichia coli [TaxId: 562]

Probab=98.34  E-value=4.8e-07  Score=80.34  Aligned_cols=105  Identities=14%  Similarity=-0.013  Sum_probs=88.5

Q ss_pred             HHHhhhhhhhhhhhhhHHHHHHHHHHHHHhhccchhhhhhhhHHHHHHHhhchhhhHHHHHHHHhcCHHHHHHHHHHHH-
Q 017811          182 ADRRKMDGNALFKEEKLEEAMQQYEMAIAYMGDDFMFQLFGKYRDMALAVKNPCHLNMAACLLKLKRYEEAIGQCSLVL-  260 (365)
Q Consensus       182 a~~~k~~G~~~~~~~~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~kl~~~~~A~~~~~~aL-  260 (365)
                      +..+...|..+...+++..|...|.+++...+.+...             ....+.++|.+++.+|++++|+..+++++ 
T Consensus       213 ~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~-------------~~~~~~~la~~~~~~g~~~~A~~~~~~al~  279 (366)
T d1hz4a_         213 SNANKVRVIYWQMTGDKAAAANWLRHTAKPEFANNHF-------------LQGQWRNIARAQILLGEFEPAEIVLEELNE  279 (366)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHSCCCCCTTCGG-------------GHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhcccHHHHHHHHHHHHHhccccchH-------------HHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence            3345667888889999999999999999887764322             23347899999999999999999999998 


Q ss_pred             -----hCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC
Q 017811          261 -----GEDENNVKALFRRGKARAELGQTDAAREDFLKAGKFAPE  299 (365)
Q Consensus       261 -----~~~p~n~ka~~~~g~a~~~l~~~~~A~~~l~~al~l~P~  299 (365)
                           ...|....+++.+|.+|..+|++++|+..|++|+.+.+.
T Consensus       280 ~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~Al~l~~~  323 (366)
T d1hz4a_         280 NARSLRLMSDLNRNLLLLNQLYWQAGRKSDAQRVLLDALKLANR  323 (366)
T ss_dssp             HHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHH
T ss_pred             HHhhcccChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHhhh
Confidence                 455677899999999999999999999999999998653

>d2onda1 a.118.8.7 (A:242-549) Cleavage stimulation factor 77 kDa subunit CSTF3 {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: HAT/Suf repeat
domain: Cleavage stimulation factor 77 kDa subunit CSTF3
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.33  E-value=6.4e-06  Score=73.31  Aligned_cols=134  Identities=7%  Similarity=-0.058  Sum_probs=106.8

Q ss_pred             hhhhhhhhhhhHHHHHHHHHHHHHhhccchhhhhhhhHHHHHHHhhchhhhHHHHHHHHhcCHHHHHHHHHHHHhCCCCC
Q 017811          187 MDGNALFKEEKLEEAMQQYEMAIAYMGDDFMFQLFGKYRDMALAVKNPCHLNMAACLLKLKRYEEAIGQCSLVLGEDENN  266 (365)
Q Consensus       187 ~~G~~~~~~~~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~kl~~~~~A~~~~~~aL~~~p~n  266 (365)
                      ..+....+.|+++.|...|.++|...|.+..                .++..++.+..+.++++.|+..+.+++...|.+
T Consensus       104 ~ya~~~~~~~~~~~a~~i~~~~l~~~~~~~~----------------~~w~~~~~~~~~~~~~~~ar~i~~~al~~~~~~  167 (308)
T d2onda1         104 AYADYEESRMKYEKVHSIYNRLLAIEDIDPT----------------LVYIQYMKFARRAEGIKSGRMIFKKAREDARTR  167 (308)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHHHTSSSSCTH----------------HHHHHHHHHHHHHHCHHHHHHHHHHHHTSTTCC
T ss_pred             HHHHHHHhcccHHHHHHHHHHHHHHhcCChH----------------HHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCc
Confidence            3455556778888888888888887776532                246788888889999999999999999999999


Q ss_pred             HHHHHHHHHHHHH-cCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCCCccc
Q 017811          267 VKALFRRGKARAE-LGQTDAAREDFLKAGKFAPEDKSIARELRLLAEHEKAVYKKQKEIYKGIFGPRPEPKQ  337 (365)
Q Consensus       267 ~ka~~~~g~a~~~-l~~~~~A~~~l~~al~l~P~n~~~~~~l~~l~~~~~~~~~~~k~~y~kmf~~~~~~~~  337 (365)
                      ...+...|..... .++.+.|...|++++...|.+..+......+....++. ...|..|.+.+...+....
T Consensus       168 ~~~~~~~a~~e~~~~~~~~~a~~i~e~~l~~~p~~~~~w~~y~~~~~~~g~~-~~aR~~fe~ai~~~~~~~~  238 (308)
T d2onda1         168 HHVYVTAALMEYYCSKDKSVAFKIFELGLKKYGDIPEYVLAYIDYLSHLNED-NNTRVLFERVLTSGSLPPE  238 (308)
T ss_dssp             THHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCH-HHHHHHHHHHHHSSSSCGG
T ss_pred             HHHHHHHHHHHHHhccCHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHcCCh-HHHHHHHHHHHHhCCCChH
Confidence            9999988887544 68999999999999999999999888888776666554 4578889998776664443

>d1zbpa1 e.61.1.1 (A:2-265) Hypothetical protein VPA1032 {Vibrio parahaemolyticus [TaxId: 670]}

class: Multi-domain proteins (alpha and beta)
fold: ImpE-like
superfamily: ImpE-like
family: ImpE-like
domain: Hypothetical protein VPA1032
species: Vibrio parahaemolyticus [TaxId: 670]

Probab=98.32  E-value=1.3e-06  Score=76.62  Aligned_cols=75  Identities=17%  Similarity=0.102  Sum_probs=68.6

Q ss_pred             HHHHhcCHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHHHH
Q 017811          242 CLLKLKRYEEAIGQCSLVLGEDENNVKALFRRGKARAELGQTDAAREDFLKAGKFAPEDKSIARELRLLAEHEKA  316 (365)
Q Consensus       242 ~~~kl~~~~~A~~~~~~aL~~~p~n~ka~~~~g~a~~~l~~~~~A~~~l~~al~l~P~n~~~~~~l~~l~~~~~~  316 (365)
                      -.++.|++++|+..++++++.+|.|..++..+|.+|...|++++|+..|+++++++|++..+...+..+......
T Consensus         5 ~aL~~G~l~eAl~~l~~al~~~P~d~~ar~~La~lL~~~G~~e~A~~~l~~a~~l~P~~~~~~~~l~~ll~a~~~   79 (264)
T d1zbpa1           5 NALSEGQLQQALELLIEAIKASPKDASLRSSFIELLCIDGDFERADEQLMQSIKLFPEYLPGASQLRHLVKAAQA   79 (264)
T ss_dssp             HHTTTTCHHHHHHHHHHHHHTCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHH
T ss_pred             HHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhccc
Confidence            456789999999999999999999999999999999999999999999999999999999998888877554444

>d2pqrb1 a.118.8.1 (B:5-128) Mitochondria fission protein Fis1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Mitochondria fission protein Fis1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=98.19  E-value=4.8e-06  Score=63.53  Aligned_cols=66  Identities=11%  Similarity=0.050  Sum_probs=55.6

Q ss_pred             hhHHHHHHHHHHHHHhhccchhhhhhhhHHHHHHHhhchhhhHHHHHHHHhcCHHHHHHHHHHHHhCCCCCHHHHHHHHH
Q 017811          196 EKLEEAMQQYEMAIAYMGDDFMFQLFGKYRDMALAVKNPCHLNMAACLLKLKRYEEAIGQCSLVLGEDENNVKALFRRGK  275 (365)
Q Consensus       196 ~~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~kl~~~~~A~~~~~~aL~~~p~n~ka~~~~g~  275 (365)
                      .+..+||.+++.+++..|.+.                ..++++||.+|+++|+|++|..+|+++|+++|+|..|..-+-.
T Consensus        52 ~d~~~gI~lLe~~~~~~p~~~----------------rd~lY~Lav~yyklgdy~~A~~~~~~~L~ieP~n~qA~~L~~~  115 (124)
T d2pqrb1          52 NDERLGVKILTDIYKEAESRR----------------RECLYYLTIGCYKLGEYSMAKRYVDTLFEHERNNKQVGALKSM  115 (124)
T ss_dssp             HHHHHHHHHHHHHHHHCGGGH----------------HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHhcCchhH----------------HHHHHHHHHHHHHHhhHHHHHHHHHHHHccCCCcHHHHHHHHH
Confidence            567789999999988766542                3469999999999999999999999999999999998766555


Q ss_pred             HH
Q 017811          276 AR  277 (365)
Q Consensus       276 a~  277 (365)
                      +.
T Consensus       116 Ie  117 (124)
T d2pqrb1         116 VE  117 (124)
T ss_dssp             HH
T ss_pred             HH
Confidence            44

>d2onda1 a.118.8.7 (A:242-549) Cleavage stimulation factor 77 kDa subunit CSTF3 {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: HAT/Suf repeat
domain: Cleavage stimulation factor 77 kDa subunit CSTF3
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.18  E-value=4.9e-06  Score=74.14  Aligned_cols=131  Identities=15%  Similarity=0.041  Sum_probs=103.4

Q ss_pred             hhhhhhhhhhHHHHHHHHHHHHHhh-ccchhhhhhhhHHHHHHHhhchhhhHHHHHHHHhcCHHHHHHHHHHHHhCCCCC
Q 017811          188 DGNALFKEEKLEEAMQQYEMAIAYM-GDDFMFQLFGKYRDMALAVKNPCHLNMAACLLKLKRYEEAIGQCSLVLGEDENN  266 (365)
Q Consensus       188 ~G~~~~~~~~y~~A~~~y~~al~~~-~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~kl~~~~~A~~~~~~aL~~~p~n  266 (365)
                      .|......+.+++|...|.+|+... |.+.                 .+++..|..+...|++++|...++++|...|.+
T Consensus        70 ~~~~~~~~~~~~~a~~i~~ral~~~~p~~~-----------------~l~~~ya~~~~~~~~~~~a~~i~~~~l~~~~~~  132 (308)
T d2onda1          70 KGDMNNAKLFSDEAANIYERAISTLLKKNM-----------------LLYFAYADYEESRMKYEKVHSIYNRLLAIEDID  132 (308)
T ss_dssp             TSCCHHHHHHHHHHHHHHHHHHTTTTTTCH-----------------HHHHHHHHHHHHTTCHHHHHHHHHHHHTSSSSC
T ss_pred             HHHHhhcccchHHHHHHHHHHHHHcCCCCH-----------------HHHHHHHHHHHhcccHHHHHHHHHHHHHHhcCC
Confidence            3334455667889999999999764 4432                 247888999999999999999999999999976


Q ss_pred             -HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCCCc
Q 017811          267 -VKALFRRGKARAELGQTDAAREDFLKAGKFAPEDKSIARELRLLAEHEKAVYKKQKEIYKGIFGPRPEP  335 (365)
Q Consensus       267 -~ka~~~~g~a~~~l~~~~~A~~~l~~al~l~P~n~~~~~~l~~l~~~~~~~~~~~k~~y~kmf~~~~~~  335 (365)
                       ..++...+......++++.|...|++++...|.+.........+........+..+..|.+++...|..
T Consensus       133 ~~~~w~~~~~~~~~~~~~~~ar~i~~~al~~~~~~~~~~~~~a~~e~~~~~~~~~a~~i~e~~l~~~p~~  202 (308)
T d2onda1         133 PTLVYIQYMKFARRAEGIKSGRMIFKKAREDARTRHHVYVTAALMEYYCSKDKSVAFKIFELGLKKYGDI  202 (308)
T ss_dssp             THHHHHHHHHHHHHHHCHHHHHHHHHHHHTSTTCCTHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHTTC
T ss_pred             hHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhccCHHHHHHHHHHHHHhhhhh
Confidence             457889999999999999999999999999999888777766554433333455677788887765544

>d1ouva_ a.118.18.1 (A:) Cysteine rich protein C (HcpC) {Helicobacter pylori [TaxId: 210]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: HCP-like
family: HCP-like
domain: Cysteine rich protein C (HcpC)
species: Helicobacter pylori [TaxId: 210]

Probab=97.57  E-value=0.00049  Score=58.79  Aligned_cols=97  Identities=15%  Similarity=0.113  Sum_probs=80.5

Q ss_pred             HHHhhhhhhhhhhhhhHHHHHHHHHHHHHhhccchhhhhhhhHHHHHHHhhchhhhHHHHHHHH----hcCHHHHHHHHH
Q 017811          182 ADRRKMDGNALFKEEKLEEAMQQYEMAIAYMGDDFMFQLFGKYRDMALAVKNPCHLNMAACLLK----LKRYEEAIGQCS  257 (365)
Q Consensus       182 a~~~k~~G~~~~~~~~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~k----l~~~~~A~~~~~  257 (365)
                      ++.+...|..++.+++|.+|+..|++|.+..  +                 ..++++||.+|..    ..++..|..++.
T Consensus         2 p~~~~~lG~~~~~~~d~~~A~~~~~kAa~~g--~-----------------~~A~~~Lg~~y~~G~~~~~d~~~a~~~~~   62 (265)
T d1ouva_           2 PKELVGLGAKSYKEKDFTQAKKYFEKACDLK--E-----------------NSGCFNLGVLYYQGQGVEKNLKKAASFYA   62 (265)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT--C-----------------HHHHHHHHHHHHHTSSSCCCHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHCCCHHHHHHHHHHHHHCC--C-----------------HHHHHHHHHHHHcCCCcchhHHHHHHhhc
Confidence            3567889999999999999999999998753  2                 2248899999988    679999999999


Q ss_pred             HHHhCCCCCHHHHHHHHHHHHH----cCCHHHHHHHHHHHHhhCCC
Q 017811          258 LVLGEDENNVKALFRRGKARAE----LGQTDAAREDFLKAGKFAPE  299 (365)
Q Consensus       258 ~aL~~~p~n~ka~~~~g~a~~~----l~~~~~A~~~l~~al~l~P~  299 (365)
                      .+....  ++.+.+.+|.++..    ..+.+.|...|+.+....+.
T Consensus        63 ~a~~~~--~~~a~~~l~~~~~~~~~~~~~~~~a~~~~~~a~~~g~~  106 (265)
T d1ouva_          63 KACDLN--YSNGCHLLGNLYYSGQGVSQNTNKALQYYSKACDLKYA  106 (265)
T ss_dssp             HHHHTT--CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCH
T ss_pred             cccccc--ccchhhccccccccccccchhhHHHHHHHhhhhhhhhh
Confidence            987655  88889999988876    46789999999999876553

>d1klxa_ a.118.18.1 (A:) Cysteine rich protein B (HcpB) {Helicobacter pylori [TaxId: 210]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: HCP-like
family: HCP-like
domain: Cysteine rich protein B (HcpB)
species: Helicobacter pylori [TaxId: 210]

Probab=97.35  E-value=0.00078  Score=51.59  Aligned_cols=59  Identities=17%  Similarity=0.101  Sum_probs=35.4

Q ss_pred             hhHHHHHHHH----hcCHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHH----cCCHHHHHHHHHHHHhh
Q 017811          236 HLNMAACLLK----LKRYEEAIGQCSLVLGEDENNVKALFRRGKARAE----LGQTDAAREDFLKAGKF  296 (365)
Q Consensus       236 ~~nla~~~~k----l~~~~~A~~~~~~aL~~~p~n~ka~~~~g~a~~~----l~~~~~A~~~l~~al~l  296 (365)
                      +++||.+|..    ..++.+|+.+++++.+.  .++.+.+++|.+|..    ..++.+|+.+|++|.++
T Consensus        58 ~~~Lg~~y~~g~~~~~d~~~A~~~~~~aa~~--g~~~a~~~Lg~~y~~G~gv~~d~~~A~~~~~~Aa~~  124 (133)
T d1klxa_          58 CRFLGDFYENGKYVKKDLRKAAQYYSKACGL--NDQDGCLILGYKQYAGKGVVKNEKQAVKTFEKACRL  124 (133)
T ss_dssp             HHHHHHHHHHCSSSCCCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT
T ss_pred             hhhHHHhhhhccccchhhHHHHHHHhhhhcc--CcchHHHHHHHHHHcCCccCCCHHHHHHHHHHHHHC
Confidence            5566666654    34566666666666554  356666666666665    34566666666666654

>d1ouva_ a.118.18.1 (A:) Cysteine rich protein C (HcpC) {Helicobacter pylori [TaxId: 210]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: HCP-like
family: HCP-like
domain: Cysteine rich protein C (HcpC)
species: Helicobacter pylori [TaxId: 210]

Probab=97.31  E-value=0.00063  Score=58.09  Aligned_cols=73  Identities=23%  Similarity=0.266  Sum_probs=60.5

Q ss_pred             hhhhHHHHHHHH----hcCHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHH----cCCHHHHHHHHHHHHhhCCCcHHHHH
Q 017811          234 PCHLNMAACLLK----LKRYEEAIGQCSLVLGEDENNVKALFRRGKARAE----LGQTDAAREDFLKAGKFAPEDKSIAR  305 (365)
Q Consensus       234 ~~~~nla~~~~k----l~~~~~A~~~~~~aL~~~p~n~ka~~~~g~a~~~----l~~~~~A~~~l~~al~l~P~n~~~~~  305 (365)
                      .+++++|.+|..    .+++.+|+.+|.++.+.  +++.|+|++|.+|..    ..++.+|+.+|++|..+.+  ..+..
T Consensus       179 ~A~~~lg~~y~~g~~~~~d~~~A~~~~~~aa~~--g~~~a~~~LG~~y~~G~g~~~n~~~A~~~~~kAa~~g~--~~A~~  254 (265)
T d1ouva_         179 PGCFNAGNMYHHGEGATKNFKEALARYSKACEL--ENGGGCFNLGAMQYNGEGVTRNEKQAIENFKKGCKLGA--KGACD  254 (265)
T ss_dssp             HHHHHHHHHHHHTCSSCCCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHTTSSSSCCSTTHHHHHHHHHHHTC--HHHHH
T ss_pred             ccccchhhhcccCcccccchhhhhhhHhhhhcc--cCHHHHHHHHHHHHcCCCCccCHHHHHHHHHHHHHCcC--HHHHH
Confidence            458899999988    67999999999999887  489999999999986    4589999999999998864  44555


Q ss_pred             HHHHH
Q 017811          306 ELRLL  310 (365)
Q Consensus       306 ~l~~l  310 (365)
                      .|..+
T Consensus       255 ~l~~l  259 (265)
T d1ouva_         255 ILKQL  259 (265)
T ss_dssp             HHHTC
T ss_pred             HHHHH
Confidence            55443

>d1klxa_ a.118.18.1 (A:) Cysteine rich protein B (HcpB) {Helicobacter pylori [TaxId: 210]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: HCP-like
family: HCP-like
domain: Cysteine rich protein B (HcpB)
species: Helicobacter pylori [TaxId: 210]

Probab=97.29  E-value=0.0013  Score=50.24  Aligned_cols=93  Identities=15%  Similarity=-0.001  Sum_probs=73.8

Q ss_pred             hhhHHHHHHHHHHHHHhhccchhhhhhhhHHHHHHHhhchhhhHHHHHHHHhcCHHHHHHHHHHHHhCCCCCHHHHHHHH
Q 017811          195 EEKLEEAMQQYEMAIAYMGDDFMFQLFGKYRDMALAVKNPCHLNMAACLLKLKRYEEAIGQCSLVLGEDENNVKALFRRG  274 (365)
Q Consensus       195 ~~~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~kl~~~~~A~~~~~~aL~~~p~n~ka~~~~g  274 (365)
                      ..++.+|+..|++|.+....                   .++++|+.  ....++++|+.++.++.+.  +++.+++.+|
T Consensus         6 ~kd~~~A~~~~~kaa~~g~~-------------------~a~~~l~~--~~~~~~~~a~~~~~~aa~~--g~~~a~~~Lg   62 (133)
T d1klxa_           6 KKDLKKAIQYYVKACELNEM-------------------FGCLSLVS--NSQINKQKLFQYLSKACEL--NSGNGCRFLG   62 (133)
T ss_dssp             HHHHHHHHHHHHHHHHTTCT-------------------THHHHHHT--CTTSCHHHHHHHHHHHHHT--TCHHHHHHHH
T ss_pred             ccCHHHHHHHHHHHHHCCCh-------------------hhhhhhcc--ccccCHHHHHHHHhhhhcc--cchhhhhhHH
Confidence            46899999999999876432                   12455553  3457899999999999875  5899999999


Q ss_pred             HHHHH----cCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHH
Q 017811          275 KARAE----LGQTDAAREDFLKAGKFAPEDKSIARELRLLAE  312 (365)
Q Consensus       275 ~a~~~----l~~~~~A~~~l~~al~l~P~n~~~~~~l~~l~~  312 (365)
                      ..|..    ..++.+|+.+|+++.+.  .++.+...|..+..
T Consensus        63 ~~y~~g~~~~~d~~~A~~~~~~aa~~--g~~~a~~~Lg~~y~  102 (133)
T d1klxa_          63 DFYENGKYVKKDLRKAAQYYSKACGL--NDQDGCLILGYKQY  102 (133)
T ss_dssp             HHHHHCSSSCCCHHHHHHHHHHHHHT--TCHHHHHHHHHHHH
T ss_pred             HhhhhccccchhhHHHHHHHhhhhcc--CcchHHHHHHHHHH
Confidence            99987    56799999999999886  56777777777654

>d1wfda_ a.7.14.1 (A:) Hypothetical protein 1500032H18Rik {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: Spectrin repeat-like
superfamily: MIT domain
family: MIT domain
domain: Hypothetical protein 1500032H18Rik
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=91.77  E-value=0.24  Score=34.68  Aligned_cols=37  Identities=19%  Similarity=0.108  Sum_probs=32.9

Q ss_pred             HHHHHHHhhhhhhhhhhhhhHHHHHHHHHHHHHhhcc
Q 017811          178 RIGAADRRKMDGNALFKEEKLEEAMQQYEMAIAYMGD  214 (365)
Q Consensus       178 ~~~~a~~~k~~G~~~~~~~~y~~A~~~y~~al~~~~~  214 (365)
                      .+..|..+..+|..+-..|+|.+|+.+|..||+++-.
T Consensus        11 ~~~~A~~l~~~Av~~D~~g~y~eA~~~Y~~aie~l~~   47 (93)
T d1wfda_          11 DSTAAVAVLKRAVELDAESRYQQALVCYQEGIDMLLQ   47 (93)
T ss_dssp             HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHH
Confidence            4677888899999999999999999999999988744

>d2crba1 a.7.16.1 (A:8-90) Nuclear receptor binding factor 2, NRBF2, N-terminal domain {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: Spectrin repeat-like
superfamily: MIT domain-like
family: MIT domain
domain: Nuclear receptor binding factor 2, NRBF2, N-terminal domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=90.68  E-value=0.15  Score=34.41  Aligned_cols=37  Identities=22%  Similarity=0.343  Sum_probs=32.7

Q ss_pred             HHHHHHHhhhhhhhhhhhhhHHHHHHHHHHHHHhhcc
Q 017811          178 RIGAADRRKMDGNALFKEEKLEEAMQQYEMAIAYMGD  214 (365)
Q Consensus       178 ~~~~a~~~k~~G~~~~~~~~y~~A~~~y~~al~~~~~  214 (365)
                      -++.|-.+-.++..+.+.|+|++||.++++|..++..
T Consensus         4 PLN~AH~~~RrAer~l~~~rydeAIech~kA~~yl~e   40 (83)
T d2crba1           4 PLNLAHQQSRRADRLLAAGKYEEAISCHRKATTYLSE   40 (83)
T ss_dssp             HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred             hhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHH
Confidence            3678888999999999999999999999999987643

>d1wr0a1 a.7.14.1 (A:5-81) Vacuolar sorting protein 4b (VPS4B, SKD1 protein) {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: Spectrin repeat-like
superfamily: MIT domain
family: MIT domain
domain: Vacuolar sorting protein 4b (VPS4B, SKD1 protein)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=88.70  E-value=0.16  Score=34.32  Aligned_cols=37  Identities=24%  Similarity=0.217  Sum_probs=32.6

Q ss_pred             HHHHHHHHhhhhhhhhhhhhhHHHHHHHHHHHHHhhc
Q 017811          177 ERIGAADRRKMDGNALFKEEKLEEAMQQYEMAIAYMG  213 (365)
Q Consensus       177 e~~~~a~~~k~~G~~~~~~~~y~~A~~~y~~al~~~~  213 (365)
                      ..++.|..+..+|..+=+.|+|.+|+.+|..|+.++-
T Consensus         6 ~~l~~A~~l~~~Av~~D~~~~y~~A~~~Y~~a~~~l~   42 (77)
T d1wr0a1           6 PNLQKAIDLASKAAQEDKAGNYEEALQLYQHAVQYFL   42 (77)
T ss_dssp             HHHHHHHHHHHHHHHHHHTTCCSSHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH
Confidence            4567888899999999999999999999999998763

>d1b89a_ a.118.1.3 (A:) Clathrin heavy chain proximal leg segment {Cow (Bos taurus) [TaxId: 9913]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Clathrin heavy chain proximal leg segment
domain: Clathrin heavy chain proximal leg segment
species: Cow (Bos taurus) [TaxId: 9913]

Probab=88.60  E-value=0.91  Score=39.56  Aligned_cols=48  Identities=13%  Similarity=-0.033  Sum_probs=36.5

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHH
Q 017811          267 VKALFRRGKARAELGQTDAAREDFLKAGKFAPEDKSIARELRLLAEHE  314 (365)
Q Consensus       267 ~ka~~~~g~a~~~l~~~~~A~~~l~~al~l~P~n~~~~~~l~~l~~~~  314 (365)
                      +.-+--.-..|...|.+++.+..|..++.+++.+..+...+..+..+.
T Consensus        99 ~d~l~~~v~~ye~~~~~e~Li~~Le~~~~~~~~~~~~~~~L~~lyak~  146 (336)
T d1b89a_          99 ADELEELINYYQDRGYFEELITMLEAALGLERAHMGMFTELAILYSKF  146 (336)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHTTSTTCCHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHHHHcCChHHHHHHHHHHHcCCccchHHHHHHHHHHHHh
Confidence            334445666778888999999999999988888888887777766543