Citrus Sinensis ID: 017822

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-----
MALRVTVNFSGYVAQNLAHSAGIRFGFSTTSTRSFHECLFRPRVFCHSKKTDLDPPPNYQPKANYRCNTLAAEIFGDGACNSPILMGLVSLMKSTAGMPGPSATSMGVFGISPFKAASIIPFLQGSKWLPCNEPGTVPESDYVDKGGTTDKIQFSGSENLNGVSLQLKTSGSWLSKLLNVCSDDAKAAFTALTVSFLFKSFLAEPRSIPSASMNPTLDVGDRILAEKVSYFFKRPEVSDIVIFRAPPILQEIGFSSGDVFIKRIVATAGDCVEVHGGKLLVNGVAQDEDFILEPLAYEMDPVVVPEGYVFVLGDNRNNSFDSHNWGPLPIENIVGRSVFRYWPPSRVSDMLDDPYAMKNAAVPIA
ccEEEEEEEcHHHHHHHHHHcccccccccccccccccccccccEEccccccccccccccccccccccccHHHHHcccccccccHHccHHHHcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEcccccccccccccEEEEEEccccccccccccEEEEccccccccccccccccEEEEEEEccccEEEEEccEEEEccEEccccccccccccccccEEEccccEEEEccccccccccccccccccccEEEEEEEEEcccccccccccccccccccccccc
cEEEEEEEcHHHHHHHHHHHcccEEcccccccccHccccccccccccccccccccccccccccHHHHHHHHHHHHccccccccHHHHHHHHHHcccccccccccccccccccccccccccHcccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccEccccccccccccccEEEEEEEEEEEcccccccEEEEcccHHHHHcccccccHHEEEEEEccccEEEEEccEEEEccccccccccccccccccccEEcccccEEEEcccccccccccEcccccHHHEEEEEEEEEcccHHccccccccccccccccccc
MALRVTVNFSGYVAQNlahsagirfgfsttstrsfheclfrprvfchskktdldpppnyqpkanyrCNTLAAeifgdgacnspILMGLVSLMkstagmpgpsatsmgvfgispfkaasiipflqgskwlpcnepgtvpesdyvdkggttdkiqfsgsenlngvSLQLKTSGSWLSKLLNVCSDDAKAAFTALTVSFLFKSflaeprsipsasmnptldvgDRILAEKVSYffkrpevsdivifrappilqeigfssGDVFIKRIVAtagdcvevhggkllvngvaqdedfileplayemdpvvvpegyvfvlgdnrnnsfdshnwgplpienivgrsvfrywppsrvsdmlddpyamknaavpia
MALRVTVNFSGYVAQNLAHSAGIRFGFSTTSTRSFHECLFRPRVFchskktdldpppnYQPKANYRCNTLAAEIFGDGACNSPILMGLVSLMKSTAGMPGPSATSMGVFGISPFKAASIIPFLQGSKWLPCNEPGTVPESDYVDKGGTTDKIQfsgsenlngVSLQLKTSGSWLSKLLNVCSDDAKAAFTALTVSFLFKSFLAeprsipsasmnptlDVGDRILAEKVSYFFKRPEVSDIVIFRAPPILQEIGFSSGDVFIKRIVATAGDCVEVHGGKLLVNGVAQDEDFILEPLAYEMDPVVVPEGYVFVLGDNRNNSFDSHNWGPLPIENIVGRSVFRYWPPSrvsdmlddpyaMKNAAVPIA
MALRVTVNFSGYVAQNLAHSAGIRFGFSTTSTRSFHECLFRPRVFCHSKKTDLDPPPNYQPKANYRCNTLAAEIFGDGACNSPILMGLVSLMKSTAGMPGPSATSMGVFGISPFKAASIIPFLQGSKWLPCNEPGTVPESDYVDKGGTTDKIQFSGSENLNGVSLQLKTSGSWLSKLLNVCSDDAKAAFTALTVSFLFKSFLAEPRSIPSASMNPTLDVGDRILAEKVSYFFKRPEVSDIVIFRAPPILQEIGFSSGDVFIKRIVATAGDCVEVHGGKLLVNGVAQDEDFILEPLAYEMDPVVVPEGYVFVLGDNRNNSFDSHNWGPLPIENIVGRSVFRYWPPSRVSDMLDDPYAMKNAAVPIA
************************************ECLFRPRVFCHS*************KANYRCNTLAAEIFGDGACNSPILMGLVSLMKS**********SMGVFGISPFKAASIIPFLQGSKWLPCNEPGT***********************LNGVSLQLKTSGSWLSKLLNVCSDDAKAAFTALTVSFLFKSFLAEP*********PTLDVGDRILAEKVSYFFKRPEVSDIVIFRAPPILQEIGFSSGDVFIKRIVATAGDCVEVHGGKLLVNGVAQDEDFILEPLAYEMDPVVVPEGYVFVLGDNRNNSFDSHNWGPLPIENIVGRSVFRYWPPSR*******************
*ALRVTVNFSGYVAQNLAHSAGIRFGFSTTSTRSFHECLFRPR**************************************************************************SIIPFL********************************************************VCSDDAKAAFTALTVSFLFKSFLAEPRSIPSASMNPTLDVGDRILAEKVSYFFKRPEVSDIVIFRAPPILQEIGFSSGDVFIKRIVATAGDCVEVHGGKLLVNGVAQDEDFILEPLAYEMDPVVVPEGYVFVLGDNRNNSFDSHNWGPLPIENIVGRSVFRYWPPSRVSDMLDDPYA*********
MALRVTVNFSGYVAQNLAHSAGIRFGFSTTSTRSFHECLFRPRVFCHSKKTDLDPPPNYQPKANYRCNTLAAEIFGDGACNSPILMGLVSLMKSTAGMPGPSATSMGVFGISPFKAASIIPFLQGSKWLPCNEPGTVPESDYVDKGGTTDKIQFSGSENLNGVSLQLKTSGSWLSKLLNVCSDDAKAAFTALTVSFLFKSFLAEPRSIPSASMNPTLDVGDRILAEKVSYFFKRPEVSDIVIFRAPPILQEIGFSSGDVFIKRIVATAGDCVEVHGGKLLVNGVAQDEDFILEPLAYEMDPVVVPEGYVFVLGDNRNNSFDSHNWGPLPIENIVGRSVFRYWPPSRVSDMLDDPYAMKNAAVPIA
MALRVTVNFSGYVAQNLAHSAGIRFGFSTTSTRSFHECLFRPRVFCHSKK*DLDPPPNYQPKANYRCNTLAAEIFGDGACNSPILMGLVSLMKST************VFGISPFKAASIIPFLQGSKWLPCNEP***************************************LSKLLNVCSDDAKAAFTALTVSFLFKSFLAEPRSIPSASMNPTLDVGDRILAEKVSYFFKRPEVSDIVIFRAPPILQEIGFSSGDVFIKRIVATAGDCVEVHGGKLLVNGVAQDEDFILEPLAYEMDPVVVPEGYVFVLGDNRNNSFDSHNWGPLPIENIVGRSVFRYWPPSRVSDMLDD************
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MALRVTVNFSGYVAQNLAHSAGIRFGFSTTSTRSFHECLFRPRVFCHSKKTDLDPPPNYQPKANYRCNTLAAEIFGDGACNSPILMGLVSLMKSTAGMPGPSATSMGVFGISPFKAASIIPFLQGSKWLPCNEPGTVPESDYVDKGGTTDKIQFSGSENLNGVSLQLKTSGSWLSKLLNVCSDDAKAAFTALTVSFLFKSFLAEPRSIPSASMNPTLDVGDRILAEKVSYFFKRPEVSDIVIFRAPPILQEIGFSSGDVFIKRIVATAGDCVEVHGGKLLVNGVAQDEDFILEPLAYEMDPVVVPEGYVFVLGDNRNNSFDSHNWGPLPIENIVGRSVFRYWPPSRVSDMLDDPYAMKNAAVPIA
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query365 2.2.26 [Sep-21-2011]
Q9M9Z2367 Probable thylakoidal proc yes no 0.964 0.959 0.55 1e-107
O04348340 Thylakoidal processing pe no no 0.923 0.991 0.565 1e-105
Q8H0W1291 Chloroplast processing pe no no 0.501 0.628 0.628 3e-67
P72660196 Probable signal peptidase N/A no 0.416 0.775 0.513 6e-39
P73157218 Probable signal peptidase N/A no 0.473 0.793 0.451 4e-37
Q51876203 Signal peptidase I OS=Pho N/A no 0.452 0.812 0.424 9e-36
Q10789294 Signal peptidase I OS=Myc yes no 0.441 0.547 0.336 2e-20
O33021289 Probable signal peptidase yes no 0.512 0.647 0.295 3e-20
P26844284 Signal peptidase I OS=Pse yes no 0.432 0.556 0.318 3e-16
Q5HHB9191 Signal peptidase IB OS=St yes no 0.405 0.774 0.308 5e-16
>sp|Q9M9Z2|TPP2_ARATH Probable thylakoidal processing peptidase 2, chloroplastic OS=Arabidopsis thaliana GN=TPP2 PE=2 SV=1 Back     alignment and function desciption
 Score =  389 bits (998), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 209/380 (55%), Positives = 266/380 (70%), Gaps = 28/380 (7%)

Query: 1   MALRVTVNFSGYVAQNLAHSAGIRFGFSTTSTRSFHECLFRPRVFCHSKKTDL-DPPP-- 57
           MA+RVT  +S YVA+++A SAG R G  T   RS  E   RPR   H++  D+ D  P  
Sbjct: 1   MAIRVTFTYSSYVARSIASSAGTRVG--TGDVRSCFETWVRPRFCGHNQIPDIVDKSPGS 58

Query: 58  -NYQPKANYRC-------NTLAAEIFGDGACNSPILMGLVSLMKSTAGMPGPSATSMGVF 109
             + P +  R        +T+A EI  +G C SP+++G++SLM  T     P  + M   
Sbjct: 59  NTWGPSSGPRARPASSMYSTIAREILEEG-CKSPLVLGMISLMNLTGA---PQFSGMTGL 114

Query: 110 GISPFKAASIIPFLQGSKWLPCNEPGTVP-ESDYVDKGGTT--DKIQFSGSENL-NGVSL 165
           GISPFK +S+IPFL+GSKW+PC+ P T+  +   VD+GG     K++   S+ + NG   
Sbjct: 115 GISPFKTSSVIPFLRGSKWMPCSIPATLSTDIAEVDRGGKVCDPKVKLELSDKVSNG--- 171

Query: 166 QLKTSGSWLSKLLNVCSDDAKAAFTALTVSFLFKSFLAEPRSIPSASMNPTLDVGDRILA 225
                  W++KLLN+CS+DAKAAFTA+TVS LF+S LAEP+SIPS SM PTLDVGDR++A
Sbjct: 172 ----GNGWVNKLLNICSEDAKAAFTAVTVSLLFRSALAEPKSIPSTSMLPTLDVGDRVIA 227

Query: 226 EKVSYFFKRPEVSDIVIFRAPPILQEIGFSSGDVFIKRIVATAGDCVEVHGGKLLVNGVA 285
           EKVSYFF++PEVSDIVIF+APPIL E G+S  DVFIKRIVA+ GD VEV  GKLLVN   
Sbjct: 228 EKVSYFFRKPEVSDIVIFKAPPILVEHGYSCADVFIKRIVASEGDWVEVCDGKLLVNDTV 287

Query: 286 QDEDFILEPLAYEMDPVVVPEGYVFVLGDNRNNSFDSHNWGPLPIENIVGRSVFRYWPPS 345
           Q EDF+LEP+ YEM+P+ VPEGYVFVLGDNRN SFDSHNWGPLPI+NI+GRSVFRYWPPS
Sbjct: 288 QAEDFVLEPIDYEMEPMFVPEGYVFVLGDNRNKSFDSHNWGPLPIKNIIGRSVFRYWPPS 347

Query: 346 RVSDMLDDPYAMKNAAVPIA 365
           +VSD++      +  AV ++
Sbjct: 348 KVSDIIHHEQVSQKRAVDVS 367
Cleaves the thylakoid-transfer domain from a chloroplast protein.
Arabidopsis thaliana (taxid: 3702)
EC: 3EC: .EC: 4EC: .EC: 2EC: 1EC: .EC: 8EC: 9
>sp|O04348|TPP1_ARATH Thylakoidal processing peptidase 1, chloroplastic OS=Arabidopsis thaliana GN=TPP1 PE=2 SV=2 Back     alignment and function description
>sp|Q8H0W1|PLSP1_ARATH Chloroplast processing peptidase OS=Arabidopsis thaliana GN=PLSP1 PE=2 SV=2 Back     alignment and function description
>sp|P72660|LEP1_SYNY3 Probable signal peptidase I-1 OS=Synechocystis sp. (strain PCC 6803 / Kazusa) GN=lepB1 PE=3 SV=1 Back     alignment and function description
>sp|P73157|LEP2_SYNY3 Probable signal peptidase I-2 OS=Synechocystis sp. (strain PCC 6803 / Kazusa) GN=lepB2 PE=3 SV=1 Back     alignment and function description
>sp|Q51876|LEP_PHOLA Signal peptidase I OS=Phormidium laminosum GN=lepB PE=3 SV=1 Back     alignment and function description
>sp|Q10789|LEP_MYCTU Signal peptidase I OS=Mycobacterium tuberculosis GN=lepB PE=1 SV=1 Back     alignment and function description
>sp|O33021|LEP_MYCLE Probable signal peptidase I OS=Mycobacterium leprae (strain TN) GN=lepB PE=3 SV=1 Back     alignment and function description
>sp|P26844|LEP_PSEFL Signal peptidase I OS=Pseudomonas fluorescens GN=lepB PE=3 SV=1 Back     alignment and function description
>sp|Q5HHB9|LEP_STAAC Signal peptidase IB OS=Staphylococcus aureus (strain COL) GN=spsB PE=3 SV=2 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query365
225458489368 PREDICTED: probable thylakoidal processi 0.953 0.945 0.643 1e-128
356510334362 PREDICTED: probable thylakoidal processi 0.912 0.919 0.626 1e-122
356519126362 PREDICTED: probable thylakoidal processi 0.915 0.922 0.625 1e-121
224136660362 predicted protein [Populus trichocarpa] 0.931 0.939 0.621 1e-119
449498740 763 PREDICTED: uncharacterized protein LOC10 0.936 0.448 0.629 1e-119
449447223 761 PREDICTED: uncharacterized protein LOC10 0.958 0.459 0.612 1e-116
357465371375 Thylakoidal processing peptidase [Medica 0.942 0.917 0.594 1e-116
255538440 831 signal peptidase I, putative [Ricinus co 0.895 0.393 0.601 1e-111
297822765339 chloroplast thylakoidal processing pepti 0.915 0.985 0.567 1e-105
15222236367 signal peptidase I [Arabidopsis thaliana 0.964 0.959 0.55 1e-105
>gi|225458489|ref|XP_002284120.1| PREDICTED: probable thylakoidal processing peptidase 2, chloroplastic [Vitis vinifera] gi|147810057|emb|CAN78280.1| hypothetical protein VITISV_021649 [Vitis vinifera] Back     alignment and taxonomy information
 Score =  462 bits (1190), Expect = e-128,   Method: Compositional matrix adjust.
 Identities = 242/376 (64%), Positives = 288/376 (76%), Gaps = 28/376 (7%)

Query: 1   MALRVTVNFSGYVAQNLAHSAGIRFGFSTTSTRSFHECLFRPRVFCHSKKTDLDPP-PNY 59
           MA+++TV +SGYVAQNLA SAGIR G    + RS HEC  R R FC S+K ++D P P+ 
Sbjct: 1   MAIKLTVTYSGYVAQNLASSAGIRVG----NCRSIHECWVRSRFFCPSQKPEVDSPVPSR 56

Query: 60  QPKANYR-----C---------NTLAAEIFGDGACNSPILMGLVSLMKSTAGMPGPSATS 105
             +A+YR     C         +TLA E+FGD +C +P+++GL+SLMKS+ G+   S +S
Sbjct: 57  AYQADYRRPKANCWAKVSTSAYSTLAGEVFGD-SCRNPLIVGLISLMKSSTGV---SESS 112

Query: 106 MGVFGISPFKAASIIPFLQGSKWLPCNEPGTVPESDYVDKGGTTDKIQFSGSENLNG-VS 164
           +GVFG+SP KA SI+PFL GSKWLPCNEP      D VDKGGT    Q    E ++  + 
Sbjct: 113 VGVFGVSPLKATSILPFLPGSKWLPCNEPIQGSVGDEVDKGGT----QCCDVEVISKPLD 168

Query: 165 LQLKTSGSWLSKLLNVCSDDAKAAFTALTVSFLFKSFLAEPRSIPSASMNPTLDVGDRIL 224
            ++    +WLSKLLN CS+DA+A FTA+TVS LF+S LAEPRSIPSASM PTLDVGDRIL
Sbjct: 169 RKVLERSNWLSKLLNCCSEDARAVFTAVTVSLLFRSPLAEPRSIPSASMYPTLDVGDRIL 228

Query: 225 AEKVSYFFKRPEVSDIVIFRAPPILQEIGFSSGDVFIKRIVATAGDCVEVHGGKLLVNGV 284
           AEKVSY F+ PEVSDIVIF+ PPILQEIG+S+GDVFIKRIVA AGD VEV  GKL+VNGV
Sbjct: 229 AEKVSYVFRNPEVSDIVIFKVPPILQEIGYSAGDVFIKRIVAKAGDYVEVSEGKLMVNGV 288

Query: 285 AQDEDFILEPLAYEMDPVVVPEGYVFVLGDNRNNSFDSHNWGPLPIENIVGRSVFRYWPP 344
           AQ+EDFILEPLAY MDPV+VPEGYVFVLGDNRNNSFDSHNWGPLPI+NIVGRSV RYWPP
Sbjct: 289 AQEEDFILEPLAYNMDPVLVPEGYVFVLGDNRNNSFDSHNWGPLPIKNIVGRSVLRYWPP 348

Query: 345 SRVSDMLDDPYAMKNA 360
           S+VSD + +P A K A
Sbjct: 349 SKVSDTIYEPEARKTA 364

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|356510334|ref|XP_003523894.1| PREDICTED: probable thylakoidal processing peptidase 2, chloroplastic-like [Glycine max] Back     alignment and taxonomy information
>gi|356519126|ref|XP_003528225.1| PREDICTED: probable thylakoidal processing peptidase 2, chloroplastic-like [Glycine max] Back     alignment and taxonomy information
>gi|224136660|ref|XP_002326914.1| predicted protein [Populus trichocarpa] gi|222835229|gb|EEE73664.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|449498740|ref|XP_004160620.1| PREDICTED: uncharacterized protein LOC101229456 [Cucumis sativus] Back     alignment and taxonomy information
>gi|449447223|ref|XP_004141368.1| PREDICTED: uncharacterized protein LOC101221060, partial [Cucumis sativus] Back     alignment and taxonomy information
>gi|357465371|ref|XP_003602967.1| Thylakoidal processing peptidase [Medicago truncatula] gi|355492015|gb|AES73218.1| Thylakoidal processing peptidase [Medicago truncatula] Back     alignment and taxonomy information
>gi|255538440|ref|XP_002510285.1| signal peptidase I, putative [Ricinus communis] gi|223550986|gb|EEF52472.1| signal peptidase I, putative [Ricinus communis] Back     alignment and taxonomy information
>gi|297822765|ref|XP_002879265.1| chloroplast thylakoidal processing peptidase [Arabidopsis lyrata subsp. lyrata] gi|297325104|gb|EFH55524.1| chloroplast thylakoidal processing peptidase [Arabidopsis lyrata subsp. lyrata] Back     alignment and taxonomy information
>gi|15222236|ref|NP_172171.1| signal peptidase I [Arabidopsis thaliana] gi|75312311|sp|Q9M9Z2.1|TPP2_ARATH RecName: Full=Probable thylakoidal processing peptidase 2, chloroplastic; AltName: Full=Signal peptidase I-2; Flags: Precursor gi|7523697|gb|AAF63136.1|AC011001_6 putative signal peptidase [Arabidopsis thaliana] gi|89000987|gb|ABD59083.1| At1g06870 [Arabidopsis thaliana] gi|332189926|gb|AEE28047.1| signal peptidase I [Arabidopsis thaliana] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query365
TAIR|locus:2033108367 Plsp2A "plastidic type I signa 0.961 0.956 0.556 1e-100
TAIR|locus:2064337340 TPP "thylakoid processing pept 0.819 0.879 0.595 2.7e-93
TAIR|locus:2091717291 PLSP1 "plastidic type i signal 0.468 0.587 0.672 3.8e-62
TIGR_CMR|CHY_1360184 CHY_1360 "signal peptidase I" 0.454 0.902 0.342 2.1e-22
TIGR_CMR|DET_1192192 DET_1192 "signal peptidase I" 0.358 0.682 0.379 1.2e-17
TIGR_CMR|BA_3977183 BA_3977 "signal peptidase I S" 0.408 0.814 0.325 5.8e-17
UNIPROTKB|Q10789294 lepB "Signal peptidase I" [Myc 0.194 0.241 0.402 6.7e-17
TIGR_CMR|GSU_1267222 GSU_1267 "signal peptidase I" 0.452 0.743 0.315 3.6e-16
TAIR|locus:2019357169 AT1G29960 [Arabidopsis thalian 0.186 0.402 0.361 8.2e-15
TIGR_CMR|BA_1140187 BA_1140 "signal peptidase I" [ 0.378 0.737 0.329 1e-14
TAIR|locus:2033108 Plsp2A "plastidic type I signal peptidase 2A" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 999 (356.7 bits), Expect = 1.0e-100, P = 1.0e-100
 Identities = 212/381 (55%), Positives = 269/381 (70%)

Query:     1 MALRVTVNFSGYVAQNLAHSAGIRFGFSTTSTRSFHECLFRPRVFC-HSKKTDL-DPPPN 58
             MA+RVT  +S YVA+++A SAG R G  T   RS  E   RPR FC H++  D+ D  P 
Sbjct:     1 MAIRVTFTYSSYVARSIASSAGTRVG--TGDVRSCFETWVRPR-FCGHNQIPDIVDKSPG 57

Query:    59 ---YQPKANYRC-------NTLAAEIFGDGACNSPILMGLVSLMKSTAGMPGPSATSMGV 108
                + P +  R        +T+A EI  +G C SP+++G++SLM  T     P  + M  
Sbjct:    58 SNTWGPSSGPRARPASSMYSTIAREILEEG-CKSPLVLGMISLMNLTGA---PQFSGMTG 113

Query:   109 FGISPFKAASIIPFLQGSKWLPCNEPGTVP-ESDYVDKGGTT-D-KIQFSGSENL-NGVS 164
              GISPFK +S+IPFL+GSKW+PC+ P T+  +   VD+GG   D K++   S+ + NG  
Sbjct:   114 LGISPFKTSSVIPFLRGSKWMPCSIPATLSTDIAEVDRGGKVCDPKVKLELSDKVSNG-- 171

Query:   165 LQLKTSGSWLSKLLNVCSDDAKAAFTALTVSFLFKSFLAEPRSIPSASMNPTLDVGDRIL 224
                     W++KLLN+CS+DAKAAFTA+TVS LF+S LAEP+SIPS SM PTLDVGDR++
Sbjct:   172 -----GNGWVNKLLNICSEDAKAAFTAVTVSLLFRSALAEPKSIPSTSMLPTLDVGDRVI 226

Query:   225 AEKVSYFFKRPEVSDIVIFRAPPILQEIGFSSGDVFIKRIVATAGDCVEVHGGKLLVNGV 284
             AEKVSYFF++PEVSDIVIF+APPIL E G+S  DVFIKRIVA+ GD VEV  GKLLVN  
Sbjct:   227 AEKVSYFFRKPEVSDIVIFKAPPILVEHGYSCADVFIKRIVASEGDWVEVCDGKLLVNDT 286

Query:   285 AQDEDFILEPLAYEMDPVVVPEGYVFVLGDNRNNSFDSHNWGPLPIENIVGRSVFRYWPP 344
              Q EDF+LEP+ YEM+P+ VPEGYVFVLGDNRN SFDSHNWGPLPI+NI+GRSVFRYWPP
Sbjct:   287 VQAEDFVLEPIDYEMEPMFVPEGYVFVLGDNRNKSFDSHNWGPLPIKNIIGRSVFRYWPP 346

Query:   345 SRVSDMLDDPYAMKNAAVPIA 365
             S+VSD++      +  AV ++
Sbjct:   347 SKVSDIIHHEQVSQKRAVDVS 367
GO:0006508 "proteolysis" evidence=IEA;ISS
GO:0008233 "peptidase activity" evidence=ISS
GO:0008236 "serine-type peptidase activity" evidence=IEA
GO:0009507 "chloroplast" evidence=ISM
GO:0016020 "membrane" evidence=IEA;ISS
GO:0016021 "integral to membrane" evidence=IEA
TAIR|locus:2064337 TPP "thylakoid processing peptide" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2091717 PLSP1 "plastidic type i signal peptidase 1" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TIGR_CMR|CHY_1360 CHY_1360 "signal peptidase I" [Carboxydothermus hydrogenoformans Z-2901 (taxid:246194)] Back     alignment and assigned GO terms
TIGR_CMR|DET_1192 DET_1192 "signal peptidase I" [Dehalococcoides ethenogenes 195 (taxid:243164)] Back     alignment and assigned GO terms
TIGR_CMR|BA_3977 BA_3977 "signal peptidase I S" [Bacillus anthracis str. Ames (taxid:198094)] Back     alignment and assigned GO terms
UNIPROTKB|Q10789 lepB "Signal peptidase I" [Mycobacterium tuberculosis (taxid:1773)] Back     alignment and assigned GO terms
TIGR_CMR|GSU_1267 GSU_1267 "signal peptidase I" [Geobacter sulfurreducens PCA (taxid:243231)] Back     alignment and assigned GO terms
TAIR|locus:2019357 AT1G29960 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TIGR_CMR|BA_1140 BA_1140 "signal peptidase I" [Bacillus anthracis str. Ames (taxid:198094)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

ID ?Name ?Annotated EC number ?Identity ?Query coverage ?Hit coverage ?RBH(Q2H) ?RBH(H2Q) ?
Q9M9Z2TPP2_ARATH3, ., 4, ., 2, 1, ., 8, 90.550.96430.9591yesno

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

Prediction LevelEC numberConfidence of Prediction
3rd Layer3.4.210.963
3rd Layer3.4.21.890.946

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Fail to connect to STRING server

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query365
TIGR02227163 TIGR02227, sigpep_I_bact, signal peptidase I, bact 6e-50
cd0653085 cd06530, S26_SPase_I, The S26 Type I signal peptid 5e-26
pfam10502138 pfam10502, Peptidase_S26, Signal peptidase, peptid 1e-14
COG0681166 COG0681, LepB, Signal peptidase I [Intracellular t 1e-13
cd0646284 cd06462, Peptidase_S24_S26, The S24, S26 LexA/sign 4e-12
PRK10861324 PRK10861, PRK10861, signal peptidase I; Provisiona 3e-11
TIGR02771171 TIGR02771, TraF_Ti, conjugative transfer signal pe 1e-07
PRK10861324 PRK10861, PRK10861, signal peptidase I; Provisiona 2e-07
pfam0071769 pfam00717, Peptidase_S24, Peptidase S24-like 5e-07
COG4959173 COG4959, TraF, Type IV secretory pathway, protease 8e-06
TIGR0275490 TIGR02754, sod_Ni_protease, nickel-type superoxide 0.002
>gnl|CDD|233790 TIGR02227, sigpep_I_bact, signal peptidase I, bacterial type Back     alignment and domain information 
 Score =  164 bits (417), Expect = 6e-50
 Identities = 61/168 (36%), Positives = 93/168 (55%), Gaps = 15/168 (8%)

Query: 186 KAAFTALTVSFLFKSFLAEPRSIPSASMNPTLDVGDRILAEKVSYFFKRPEVSDIVIFRA 245
            +   A+ ++ L ++F+  P  +P  SM PTL  GDRIL  K +Y    P+  DIV+F+ 
Sbjct: 3   LSLLIAILLALLIRTFVFFPYKVPGGSMEPTLKEGDRILVNKFAYGTSDPKRGDIVVFKD 62

Query: 246 PPILQEIGFSSGDVFIKRIVATAGDCVEVHGGKLLVNGVAQDEDFI--------LEPLAY 297
           P         + +++IKR++   GD VE   GKL +NG   DE ++         E    
Sbjct: 63  PD-------DNKNIYIKRVIGLPGDKVEFRDGKLYINGKKIDEPYLKPNGFLDTSEFNTT 115

Query: 298 EMDPVVVPEGYVFVLGDNRNNSFDSHNWGPLPIENIVGRSVFRYWPPS 345
           +  PV VP G+ FVLGDNR+NS DS  +G +PI++I+G+  F ++P  
Sbjct: 116 DYGPVTVPPGHYFVLGDNRDNSLDSRYFGFVPIDDIIGKVSFVFYPFD 163

This model represents signal peptidase I from most bacteria. Eukaryotic sequences are likely organellar. Several bacteria have multiple paralogs, but these represent isozymes of signal peptidase I. Virtually all known bacteria may be presumed to A related model finds a simlar protein in many archaea and a few bacteria, as well as a microsomal (endoplasmic reticulum) protein in eukaryotes [Protein fate, Protein and peptide secretion and trafficking]. Length = 163
>gnl|CDD|119398 cd06530, S26_SPase_I, The S26 Type I signal peptidase (SPase; LepB; leader peptidase B; leader peptidase I; EC 3 Back     alignment and domain information
>gnl|CDD|151062 pfam10502, Peptidase_S26, Signal peptidase, peptidase S26 Back     alignment and domain information
>gnl|CDD|223753 COG0681, LepB, Signal peptidase I [Intracellular trafficking and secretion] Back     alignment and domain information
>gnl|CDD|119396 cd06462, Peptidase_S24_S26, The S24, S26 LexA/signal peptidase superfamily contains LexA-related and type I signal peptidase families Back     alignment and domain information
>gnl|CDD|182787 PRK10861, PRK10861, signal peptidase I; Provisional Back     alignment and domain information
>gnl|CDD|131818 TIGR02771, TraF_Ti, conjugative transfer signal peptidase TraF Back     alignment and domain information
>gnl|CDD|182787 PRK10861, PRK10861, signal peptidase I; Provisional Back     alignment and domain information
>gnl|CDD|216079 pfam00717, Peptidase_S24, Peptidase S24-like Back     alignment and domain information
>gnl|CDD|227294 COG4959, TraF, Type IV secretory pathway, protease TraF [Posttranslational modification, protein turnover, chaperones / Intracellular trafficking and secretion] Back     alignment and domain information
>gnl|CDD|233997 TIGR02754, sod_Ni_protease, nickel-type superoxide dismutase maturation protease Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 365
TIGR02227163 sigpep_I_bact signal peptidase I, bacterial type. 100.0
PRK10861324 signal peptidase I; Provisional 100.0
KOG0171176 consensus Mitochondrial inner membrane protease, s 100.0
PRK13838176 conjugal transfer pilin processing protease TraF; 99.93
TIGR02771171 TraF_Ti conjugative transfer signal peptidase TraF 99.93
KOG1568174 consensus Mitochondrial inner membrane protease, s 99.92
PRK13884178 conjugal transfer peptidase TraF; Provisional 99.92
PF10502138 Peptidase_S26: Signal peptidase, peptidase S26 ; I 99.91
TIGR0275490 sod_Ni_protease nickel-type superoxide dismutase m 99.77
cd0653085 S26_SPase_I The S26 Type I signal peptidase (SPase 99.75
COG4959173 TraF Type IV secretory pathway, protease TraF [Pos 99.65
TIGR02228158 sigpep_I_arch signal peptidase I, archaeal type. T 99.63
COG0681166 LepB Signal peptidase I [Intracellular trafficking 99.58
PF0071770 Peptidase_S24: Peptidase S24-like peptidase classi 99.09
cd0646284 Peptidase_S24_S26 The S24, S26 LexA/signal peptida 98.89
KOG3342180 consensus Signal peptidase I [Intracellular traffi 98.61
cd0652981 S24_LexA-like Peptidase S24 LexA-like proteins are 98.3
COG2932214 Predicted transcriptional regulator [Transcription 98.29
PRK10276139 DNA polymerase V subunit UmuD; Provisional 98.02
TIGR00498199 lexA SOS regulatory protein LexA. LexA acts as a h 97.91
PRK00215205 LexA repressor; Validated 97.91
PRK12423202 LexA repressor; Provisional 97.73
COG1974201 LexA SOS-response transcriptional repressors (RecA 96.64
COG0681166 LepB Signal peptidase I [Intracellular trafficking 86.33
>TIGR02227 sigpep_I_bact signal peptidase I, bacterial type Back     alignment and domain information 
Probab=100.00  E-value=2.6e-41  Score=301.99  Aligned_cols=154  Identities=39%  Similarity=0.721  Sum_probs=138.1

Q ss_pred             HHHHHHHHHHHHHHHHhcceeEEeCCCCcccccCCCCEEEEEeccccCCCCccccEEEEecCCcccccccCCCceEEEEE
Q 017822          185 AKAAFTALTVSFLFKSFLAEPRSIPSASMNPTLDVGDRILAEKVSYFFKRPEVSDIVIFRAPPILQEIGFSSGDVFIKRI  264 (365)
Q Consensus       185 ~~~l~ialli~lli~~fl~~~~~V~g~SMePTL~~GD~VlV~K~s~~~~~p~rGDIVVF~~P~~~~~~gy~~g~~~VKRV  264 (365)
                      ++.++++++++++++.|+++++.|+|+||+|||+.||+|+++|+.+..+++++||+|+|+.|.+       .++.++|||
T Consensus         2 ~~~~~~~~~~~~~i~~~~~~~~~v~g~SM~Ptl~~Gd~vlv~k~~~~~~~~~rGDiVvf~~~~~-------~~~~~iKRV   74 (163)
T TIGR02227         2 ILSLLIAILLALLIRTFVFFPYKIPGGSMEPTLKEGDRILVNKFAYGTSDPKRGDIVVFKDPDD-------NKNIYVKRV   74 (163)
T ss_pred             HHHHHHHHHHHHHHHhhEEEEEEECCcccccchhCCCEEEEEEeEcCCCCCCCCcEEEEecCCC-------CCceeEEEE
Confidence            4566777888899999999999999999999999999999999988888999999999998764       467899999


Q ss_pred             EeecCcEEEEeCCEEEeCCeecccccccCccc--------cCCCCeeecCCeEEEecCCCCCCCCCCCcCcccCCCEeEE
Q 017822          265 VATAGDCVEVHGGKLLVNGVAQDEDFILEPLA--------YEMDPVVVPEGYVFVLGDNRNNSFDSHNWGPLPIENIVGR  336 (365)
Q Consensus       265 IGlPGDtV~I~~g~vyVNGk~~~e~~~~~~~~--------~~~~~~~VP~g~yFVlGDNr~nS~DSRy~GpVp~~~IiGk  336 (365)
                      +|+|||+|+++++.+||||+.+++.|......        ....+.+||+|||||||||+++|+||||||+|++++|+||
T Consensus        75 ig~pGd~v~i~~~~l~vNg~~~~~~~~~~~~~~~~~~~~~~~~~~~~vp~g~~fvlGDnr~~S~DSR~~G~V~~~~I~Gk  154 (163)
T TIGR02227        75 IGLPGDKVEFRDGKLYINGKKIDEPYLKPNGSLDTSGFNTTDFKPVTVPPGHYFVLGDNRDNSLDSRYFGFVPIDDIIGK  154 (163)
T ss_pred             EecCCCEEEEECCEEEECCEECcccccccccccccccccccccCceEECCCCEEEECCCCCCCcccCCcCcCCHHHeEEE
Confidence            99999999999999999999999887644311        2345689999999999999999999999999999999999


Q ss_pred             EEEEEcCCC
Q 017822          337 SVFRYWPPS  345 (365)
Q Consensus       337 vi~~~wP~~  345 (365)
                      +++++||++
T Consensus       155 ~~~~~~p~~  163 (163)
T TIGR02227       155 VSFVFYPFD  163 (163)
T ss_pred             EEEEECCCC
Confidence            999999985

A related model finds a simlar protein in many archaea and a few bacteria, as well as a microsomal (endoplasmic reticulum) protein in eukaryotes.
>PRK10861 signal peptidase I; Provisional Back     alignment and domain information
>KOG0171 consensus Mitochondrial inner membrane protease, subunit IMP1 [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>PRK13838 conjugal transfer pilin processing protease TraF; Provisional Back     alignment and domain information
>TIGR02771 TraF_Ti conjugative transfer signal peptidase TraF Back     alignment and domain information
>KOG1568 consensus Mitochondrial inner membrane protease, subunit IMP2 [Posttranslational modification, protein turnover, chaperones; Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>PRK13884 conjugal transfer peptidase TraF; Provisional Back     alignment and domain information
>PF10502 Peptidase_S26: Signal peptidase, peptidase S26 ; InterPro: IPR019533 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families Back     alignment and domain information
>TIGR02754 sod_Ni_protease nickel-type superoxide dismutase maturation protease Back     alignment and domain information
>cd06530 S26_SPase_I The S26 Type I signal peptidase (SPase; LepB; leader peptidase B; leader peptidase I; EC 3 Back     alignment and domain information
>COG4959 TraF Type IV secretory pathway, protease TraF [Posttranslational modification, protein turnover, chaperones / Intracellular trafficking and secretion] Back     alignment and domain information
>TIGR02228 sigpep_I_arch signal peptidase I, archaeal type Back     alignment and domain information
>COG0681 LepB Signal peptidase I [Intracellular trafficking and secretion] Back     alignment and domain information
>PF00717 Peptidase_S24: Peptidase S24-like peptidase classification Back     alignment and domain information
>cd06462 Peptidase_S24_S26 The S24, S26 LexA/signal peptidase superfamily contains LexA-related and type I signal peptidase families Back     alignment and domain information
>KOG3342 consensus Signal peptidase I [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>cd06529 S24_LexA-like Peptidase S24 LexA-like proteins are involved in the SOS response leading to the repair of single-stranded DNA within the bacterial cell Back     alignment and domain information
>COG2932 Predicted transcriptional regulator [Transcription] Back     alignment and domain information
>PRK10276 DNA polymerase V subunit UmuD; Provisional Back     alignment and domain information
>TIGR00498 lexA SOS regulatory protein LexA Back     alignment and domain information
>PRK00215 LexA repressor; Validated Back     alignment and domain information
>PRK12423 LexA repressor; Provisional Back     alignment and domain information
>COG1974 LexA SOS-response transcriptional repressors (RecA-mediated autopeptidases) [Transcription / Signal transduction mechanisms] Back     alignment and domain information
>COG0681 LepB Signal peptidase I [Intracellular trafficking and secretion] Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query365
1kn9_A249 Crystal Structure Of A Bacterial Signal Peptidase A 2e-06
1kn9_A249 Crystal Structure Of A Bacterial Signal Peptidase A 1e-05
1t7d_A250 Crystal Structure Of Escherichia Coli Type I Signal 2e-06
1t7d_A250 Crystal Structure Of Escherichia Coli Type I Signal 1e-05
1b12_A248 Crystal Structure Of Type 1 Signal Peptidase From E 3e-06
1b12_A248 Crystal Structure Of Type 1 Signal Peptidase From E 2e-05
>pdb|1KN9|A Chain A, Crystal Structure Of A Bacterial Signal Peptidase Apo- Enzyme, Implications For Signal Peptide Binding And The Ser-Lys Dyad Mechanism. Length = 249 Back     alignment and structure 
Iteration: 1

 Score = 50.4 bits (119), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 35/90 (38%), Positives = 44/90 (48%), Gaps = 23/90 (25%)
Query: 197 LFKSFLAEPRSIPSASMNPTLDVGDRILAEKVSYFFK------------RPEVSDIVIFR 244
           + +SF+ EP  IPS SM PTL +GD IL EK +Y  K             P+  DIV+F+
Sbjct: 1   MVRSFIYEPFQIPSGSMMPTLLIGDFILVEKFAYGIKDPIYQKTLIETGHPKRGDIVVFK 60
Query: 245 AP--PILQEIGFSSGDVFIKRIVATAGDCV 272
            P  P L          +IKR V   GD V
Sbjct: 61  YPEDPKLD---------YIKRAVGLPGDKV 81
>pdb|1KN9|A Chain A, Crystal Structure Of A Bacterial Signal Peptidase Apo- Enzyme, Implications For Signal Peptide Binding And The Ser-Lys Dyad Mechanism. Length = 249 Back     alignment and structure
>pdb|1T7D|A Chain A, Crystal Structure Of Escherichia Coli Type I Signal Peptidase In Complex With A Lipopeptide Inhibitor Length = 250 Back     alignment and structure
>pdb|1T7D|A Chain A, Crystal Structure Of Escherichia Coli Type I Signal Peptidase In Complex With A Lipopeptide Inhibitor Length = 250 Back     alignment and structure
>pdb|1B12|A Chain A, Crystal Structure Of Type 1 Signal Peptidase From Escherichia Coli In Complex With A Beta-Lactam Inhibitor Length = 248 Back     alignment and structure
>pdb|1B12|A Chain A, Crystal Structure Of Type 1 Signal Peptidase From Escherichia Coli In Complex With A Beta-Lactam Inhibitor Length = 248 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query365
1b12_A248 Signal peptidase I; serine proteinase, serine-depe 1e-17
1b12_A248 Signal peptidase I; serine proteinase, serine-depe 2e-14
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 1e-06
>1b12_A Signal peptidase I; serine proteinase, serine-dependant hydrolase, signal peptid processing, protein translocation; HET: 1PN; 1.95A {Escherichia coli} SCOP: b.87.1.2 PDB: 3s04_A* 1t7d_A* 3iiq_A* 1kn9_A* Length = 248 Back     alignment and structure
 Score = 80.3 bits (198), Expect = 1e-17
 Identities = 42/174 (24%), Positives = 56/174 (32%), Gaps = 23/174 (13%)

Query: 199 KSFLAEPRSIPSASMNPTLDVGDRILAEKVSY------------FFKRPEVSDIVIFRAP 246
           +SF+ EP  IPS SM PTL +GD IL EK +Y                P+  DIV+F+ P
Sbjct: 2   RSFIYEPFQIPSGSMMPTLLIGDFILVEKFAYGIKDPIYQKTLIETGHPKRGDIVVFKYP 61

Query: 247 PILQEIGFSSGDVFIKRIVATAGDCVEVHG--GKLLVNGVAQDEDFIL--EPLAYEMDPV 302
                        +IKR V   GD V       +L +              P+ Y     
Sbjct: 62  E-------DPKLDYIKRAVGLPGDKVTYDPVSKELTIQPGCSSGQACENALPVTYSNVEP 114

Query: 303 VVPEGYVFVLGDNRNNSFDSHNWGPLPIENIVGRSVFRYWPPSRVSDMLDDPYA 356
                           S           EN +  S  +         +L  P A
Sbjct: 115 SDFVQTFSRRNGGEATSGFFEVPKNETKENGIRLSERKETLGDVTHRILTVPIA 168
>1b12_A Signal peptidase I; serine proteinase, serine-dependant hydrolase, signal peptid processing, protein translocation; HET: 1PN; 1.95A {Escherichia coli} SCOP: b.87.1.2 PDB: 3s04_A* 1t7d_A* 3iiq_A* 1kn9_A* Length = 248 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query365
1b12_A248 Signal peptidase I; serine proteinase, serine-depe 100.0
1kca_A109 Repressor protein CI; gene regulation, DNA-binding 99.04
1umu_A116 UMUD'; induced mutagenesis, SOS mutagenesis, DNA r 98.79
1jhf_A202 LEXA repressor; LEXA SOS repressor, hydrolase; 1.8 98.58
3bdn_A236 Lambda repressor; repressor, allostery; HET: DNA; 98.5
2hnf_A133 Repressor protein CI101-229DM-K192A; viral protein 98.48
3k2z_A196 LEXA repressor; winged helix-turn-helix, SOS syste 98.13
2fjr_A189 Repressor protein CI; genetic switch, regulation, 92.26
>1b12_A Signal peptidase I; serine proteinase, serine-dependant hydrolase, signal peptid processing, protein translocation; HET: 1PN; 1.95A {Escherichia coli} SCOP: b.87.1.2 PDB: 3s04_A* 1t7d_A* 3iiq_A* 1kn9_A* Back     alignment and structure
Probab=100.00  E-value=5.6e-37  Score=288.68  Aligned_cols=144  Identities=38%  Similarity=0.594  Sum_probs=119.7

Q ss_pred             HHHhcceeEEeCCCCcccccCCCCEEEEEecccc------------CCCCccccEEEEecCCcccccccCCCceEEEEEE
Q 017822          198 FKSFLAEPRSIPSASMNPTLDVGDRILAEKVSYF------------FKRPEVSDIVIFRAPPILQEIGFSSGDVFIKRIV  265 (365)
Q Consensus       198 i~~fl~~~~~V~g~SMePTL~~GD~VlV~K~s~~------------~~~p~rGDIVVF~~P~~~~~~gy~~g~~~VKRVI  265 (365)
                      ++.|+++++.|+|+||+|||+.||+|+|+|.+|.            .+++++||||+|+.|.+       ++..+||||+
T Consensus         1 ir~fv~~~~~v~g~SM~Ptl~~GD~vlv~k~~yg~r~P~~~~~l~~~~~~~rGDIvvf~~p~~-------~~~~~iKRVi   73 (248)
T 1b12_A            1 VRSFIYEPFQIPSGSMMPTLLIGDFILVEKFAYGIKDPIYQKTLIETGHPKRGDIVVFKYPED-------PKLDYIKRAV   73 (248)
T ss_dssp             -CBCCEEEEECCSCTTTTTSCTTEEEEEEESEEEEECGGGSCEEEEECCCCTTCEEEEECTTC-------TTSEEEEEEE
T ss_pred             CeEEEEEEEEeccccccccccCCCEEEEEecccCcccccccccccccCCCCCCcEEEEEeCCC-------CCceEEEEEE
Confidence            3678999999999999999999999999999875            36899999999999864       4678999999


Q ss_pred             eecCcEEEEeCC--EEEeCC-----------eeccccccc---------------------------------------C
Q 017822          266 ATAGDCVEVHGG--KLLVNG-----------VAQDEDFIL---------------------------------------E  293 (365)
Q Consensus       266 GlPGDtV~I~~g--~vyVNG-----------k~~~e~~~~---------------------------------------~  293 (365)
                      |+|||+|+++++  .+||||           +.+++.+..                                       +
T Consensus        74 glpGD~v~i~~~~~~l~ING~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ip~~~~~~~~~~~~~~~e  153 (248)
T 1b12_A           74 GLPGDKVTYDPVSKELTIQPGCSSGQACENALPVTYSNVEPSDFVQTFSRRNGGEATSGFFEVPKNETKENGIRLSERKE  153 (248)
T ss_dssp             ECTTCEEEEETTTTEEEEETTCCSSCCCCCCCCEEECCCEEEEEEEEEECGGGSCEEEEEEECCTTCCCTTEEEEEEEEE
T ss_pred             eeCCCEEEEEcCceEEEECCccccccccccceeeeeeccccccccccccccccccccccccccccccccccchhhhhHHh
Confidence            999999999999  999999           555432110                                       0


Q ss_pred             ------------cc----c--c------CCCCeeecCCeEEEecCCCCCCCCCCCcCcccCCCEeEEEEEEEcCCCCCC
Q 017822          294 ------------PL----A--Y------EMDPVVVPEGYVFVLGDNRNNSFDSHNWGPLPIENIVGRSVFRYWPPSRVS  348 (365)
Q Consensus       294 ------------~~----~--~------~~~~~~VP~g~yFVlGDNr~nS~DSRy~GpVp~~~IiGkvi~~~wP~~r~g  348 (365)
                                  +.    .  +      ...+++||+||||||||||+||.||||||+||+++|+|||+++|||+++..
T Consensus       154 ~l~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~VP~g~yFvmGDNR~nS~DSR~~G~Vp~~~IvGka~~i~~s~~~~~  232 (248)
T 1b12_A          154 TLGDVTHRILTVPIAQDQVGMYYQQPGQQLATWIVPPGQYFMMGDNRDNSADSRYWGFVPEANLVGRATAIWMSFDKQE  232 (248)
T ss_dssp             EETTEEEEEEECTTCCCCGGGSCCCTTCCTTEEECCTTEEEEECSBTTSCCCHHHHCCEEGGGEEEEEEEEEEEBC---
T ss_pred             hhcCccceeEecCCccccccchhcccccccccEEeCCCcEEEecCCCcccCCCCcccccCHHHeEEEEEEEEEeCCccc
Confidence                        00    0  1      123579999999999999999999999999999999999999999988764
>1kca_A Repressor protein CI; gene regulation, DNA-binding, lambda repressor, protein oligomerization, DNA-looping; 2.91A {Enterobacteria phage lambda} SCOP: b.87.1.1 Back     alignment and structure
>1umu_A UMUD'; induced mutagenesis, SOS mutagenesis, DNA repair, beta- lactamase cleavage reaction, LEXA repressor, lambda CI; 2.50A {Escherichia coli} SCOP: b.87.1.1 PDB: 1i4v_A 1ay9_A Back     alignment and structure
>1jhf_A LEXA repressor; LEXA SOS repressor, hydrolase; 1.80A {Escherichia coli} SCOP: a.4.5.2 b.87.1.1 PDB: 1jhh_A 3jso_A* 3jsp_A* 3k3r_E* 1jhc_A 1jhe_A 1lea_A 1leb_A Back     alignment and structure
>3bdn_A Lambda repressor; repressor, allostery; HET: DNA; 3.91A {Enterobacteria phage lambda} Back     alignment and structure
>2hnf_A Repressor protein CI101-229DM-K192A; viral protein; 1.80A {Escherichia coli} PDB: 2ho0_A 1f39_A Back     alignment and structure
>3k2z_A LEXA repressor; winged helix-turn-helix, SOS system, autoca cleavage, DNA damage, DNA repair, DNA replication, DNA-BIND hydrolase; 1.37A {Thermotoga maritima} Back     alignment and structure
>2fjr_A Repressor protein CI; genetic switch, regulation, cooperativity, transcription regulator; 1.95A {Enterobacteria phage 186} PDB: 2fkd_A Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 365
d1b12a_247 b.87.1.2 (A:) Type 1 signal peptidase {Escherichia 3e-18
d1b12a_247 b.87.1.2 (A:) Type 1 signal peptidase {Escherichia 5e-15
>d1b12a_ b.87.1.2 (A:) Type 1 signal peptidase {Escherichia coli [TaxId: 562]} Length = 247 Back     information, alignment and structure

class: All beta proteins
fold: LexA/Signal peptidase
superfamily: LexA/Signal peptidase
family: Type 1 signal peptidase
domain: Type 1 signal peptidase
species: Escherichia coli [TaxId: 562]

 Score = 81.2 bits (199), Expect = 3e-18
 Identities = 38/166 (22%), Positives = 53/166 (31%), Gaps = 5/166 (3%)

Query: 200 SFLAEPRSIPSASMNPTLDVGDRILAEKVSYFFKRPEVSDIVIFRAPPILQEIGFSS--- 256
           SF+ EP  IPS SM PTL +GD IL EK +Y  K P     +I    P   +I       
Sbjct: 2   SFIYEPFQIPSGSMMPTLLIGDFILVEKFAYGIKDPIYQKTLIETGHPKRGDIVVFKYPE 61

Query: 257 --GDVFIKRIVATAGDCVEVHGGKLLVNGVAQDEDFILEPLAYEMDPVVVPEGYVFVLGD 314
                +IKR V   GD V        +              A  +    V          
Sbjct: 62  DPKLDYIKRAVGLPGDKVTYDPVSKELTIQPGCSSGQACENALPVTYSNVEPSDFVQTFS 121

Query: 315 NRNNSFDSHNWGPLPIENIVGRSVFRYWPPSRVSDMLDDPYAMKNA 360
            RN    +  +  +P        +        + D+      +  A
Sbjct: 122 RRNGGEATSGFFEVPKNETKENGIRLSERKETLGDVTHRILTVPIA 167
>d1b12a_ b.87.1.2 (A:) Type 1 signal peptidase {Escherichia coli [TaxId: 562]} Length = 247 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query365
d1b12a_247 Type 1 signal peptidase {Escherichia coli [TaxId: 100.0
d1f39a_101 lambda repressor C-terminal domain {Bacteriophage 98.82
d1jhfa2126 LexA C-terminal domain {Escherichia coli [TaxId: 5 98.36
d1umua_105 UmuD' {Escherichia coli [TaxId: 562]} 97.96
>d1b12a_ b.87.1.2 (A:) Type 1 signal peptidase {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
class: All beta proteins
fold: LexA/Signal peptidase
superfamily: LexA/Signal peptidase
family: Type 1 signal peptidase
domain: Type 1 signal peptidase
species: Escherichia coli [TaxId: 562]

Probab=100.00  E-value=7.4e-37  Score=282.58  Aligned_cols=142  Identities=37%  Similarity=0.539  Sum_probs=113.4

Q ss_pred             HHhcceeEEeCCCCcccccCCCCEEEEEeccccCCCC------------ccccEEEEecCCcccccccCCCceEEEEEEe
Q 017822          199 KSFLAEPRSIPSASMNPTLDVGDRILAEKVSYFFKRP------------EVSDIVIFRAPPILQEIGFSSGDVFIKRIVA  266 (365)
Q Consensus       199 ~~fl~~~~~V~g~SMePTL~~GD~VlV~K~s~~~~~p------------~rGDIVVF~~P~~~~~~gy~~g~~~VKRVIG  266 (365)
                      +.|+++++.|+|+||+|||+.||+|+|+|++|.++.|            ++||+|+|+.|.+       +...+||||+|
T Consensus         1 R~f~~~~f~IPs~SMePTL~~GD~l~V~K~~Yg~r~P~~~~~~~~~~~~~rgdivvf~~p~~-------~~~~~ikR~ig   73 (247)
T d1b12a_           1 RSFIYEPFQIPSGSMMPTLLIGDFILVEKFAYGIKDPIYQKTLIETGHPKRGDIVVFKYPED-------PKLDYIKRAVG   73 (247)
T ss_dssp             CBCCEEEEECCSCTTTTTSCTTEEEEEEESEEEEECGGGSCEEEEECCCCTTCEEEEECTTC-------TTSEEEEEEEE
T ss_pred             CEEEEEEEEeCcccccchhccCCEEEEEccccCccCCccCcccccccCcccCceeeecCCCC-------CCccccccccC
Confidence            3588999999999999999999999999999877654            9999999999875       56789999999


Q ss_pred             ecCcEEEEeCCEEEeCCeecccc-------------------cc----------------cC------------------
Q 017822          267 TAGDCVEVHGGKLLVNGVAQDED-------------------FI----------------LE------------------  293 (365)
Q Consensus       267 lPGDtV~I~~g~vyVNGk~~~e~-------------------~~----------------~~------------------  293 (365)
                      +|||+|.+++...++|++...+.                   +.                ..                  
T Consensus        74 ~pGD~i~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  153 (247)
T d1b12a_          74 LPGDKVTYDPVSKELTIQPGCSSGQACENALPVTYSNVEPSDFVQTFSRRNGGEATSGFFEVPKNETKENGIRLSERKET  153 (247)
T ss_dssp             CTTCEEEEETTTTEEEEETTCCSSCCCCCCCCEEECCCEEEEEEEEEECGGGSCEEEEEEECCTTCCCTTEEEEEEEEEE
T ss_pred             CCCCeEEEecccceEEecccccccceeecceeecccccCcccceeeeeeccCceeccceeeccccccccCceEeeeeeec
Confidence            99999999865444433211000                   00                00                  


Q ss_pred             -----------------------ccccCCCCeeecCCeEEEecCCCCCCCCCCCcCcccCCCEeEEEEEEEcCCCCC
Q 017822          294 -----------------------PLAYEMDPVVVPEGYVFVLGDNRNNSFDSHNWGPLPIENIVGRSVFRYWPPSRV  347 (365)
Q Consensus       294 -----------------------~~~~~~~~~~VP~g~yFVlGDNr~nS~DSRy~GpVp~~~IiGkvi~~~wP~~r~  347 (365)
                                             ........++||+||||||||||+||.|||+||+||+++|+|||+++|||+++-
T Consensus       154 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Vp~~~yfvmGDNR~nS~DSR~wG~Vp~~~I~Gka~~i~~p~~~~  230 (247)
T d1b12a_         154 LGDVTHRILTVPIAQDQVGMYYQQPGQQLATWIVPPGQYFMMGDNRDNSADSRYWGFVPEANLVGRATAIWMSFDKQ  230 (247)
T ss_dssp             ETTEEEEEEECTTCCCCGGGSCCCTTCCTTEEECCTTEEEEECSBTTSCCCHHHHCCEEGGGEEEEEEEEEEEBC--
T ss_pred             cCCcceeEEecccchhcccccccCCccccceEEEeCCeEEEecCCCCCCccccccCcCCHHHeEEEEEEEEEECCCC
Confidence                                   000123468999999999999999999999999999999999999999997653
>d1f39a_ b.87.1.1 (A:) lambda repressor C-terminal domain {Bacteriophage lambda [TaxId: 10710]} Back     information, alignment and structure
>d1jhfa2 b.87.1.1 (A:73-198) LexA C-terminal domain {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1umua_ b.87.1.1 (A:) UmuD' {Escherichia coli [TaxId: 562]} Back     information, alignment and structure