Citrus Sinensis ID: 017828

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-----
Protein Sequence
MSPPPAVGEEKRGPGNVNLLASPASMGSVCQKSSVIKERNYMGLSDSSSMDSSVVSSVSGESSKSSLNLKATELRLGLPGSQSPERGSELCLLGPAQLDEKPLFPLHPTSDSHYPSQKNVVSGNKRGFSDAMDGFLEGKYLSSSELLSPRAAPNLGLKSGSIQENLGPQTAKGKEMANQKAVQERPHVNNETITNHNGSASNSSSAPAAKAQVVGWPPIRSFRKNSLATSSKNNDEVDGKAGSSALFVKVSMDGAPYLRKVDLKNYSKYQELSSALEKMFSCFTIGQYGSHGALGREMLSESKLKDLLHGSEFVLTYEDKDGDWMLVGDVPWEMFIGTCKRLRIMKSTDAIGLAPRAVEKCRNRN
Secondary Structure (PSIPRED)
ccccccccccccccccccEEcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccEEEEEEcccEEEEEEcccccccHHHHHHHHHHHHcccccccccccccccccHHHHHHHHcccccccEEEEEEcccccEEEcccccHHHHHHHccEEEEEcccccccccHHHHHHHHccc
Secondary Structure Prediction (SSPRO)
ccccccccccccccccEEEEEccccHHHHcccccccHHccccccccccccccccccccccccccccccccHEEEEccccccccccccccccccccccccccccccccccccccccccccccccccccccHHcccccccccccccccccccccccccccccHHHccccccccccccccccccccccccccccccccccccccccccccccccEEEcccccHHHHHHHHHcccccccHHccccccccEEEEEEccccccEHHEcHHHHccHHHHHHHHHHHHccEEEcccccccccccccccHHHHHHHccccccEcEEEcccccEEEEccccHHHHHHHHHHHHEEcccHHHcccHHHHHHHcccc
Coil and Loop (DISEMBL)
mspppavgeekrgpgnvnllaspasmgsvcqkssvikernymglsdsssmdssvvssvsgessksslnlkatelrlglpgsqspergselcllgpaqldekplfplhptsdshypsqknvvsgnkrgfsdamdgflegkylsssellspraapnlglksgsiqenlgpqtakgkemanqkavqerphvnnetitnhngsasnsssapaakaqvvgwppirsfrknslatssknndevdgkagSSALFVKVSmdgapylrkvdlKNYSKYQELSSALEKMFscftigqygshgalgremlsesklkdllhgsefvltyedkdgdwmlvgdvpwemfIGTCKRLRIMKStdaiglaprAVEKCRNRN
Flexible Loop (DISEMBL)
mspppavgeekrgpgnvnllaspasmgsvCQKSSVIKERNYmglsdsssmdSSVVSSVsgessksslnlKATELRLGLPGSQSPERGSELCLLGPAQLDEKPLFPLHPTSDSHYPSQKNVVSGNKRGFSDAMDGFLEGKYLSSSELLSPRAAPNLGLKSGSIQENLGPQTAKGKEMANQKAVQERPHVNNETITNHngsasnsssapAAKAQVVGWPPIRSfrknslatssknndevdgkagsSALFVKVSMDGAPYLRKVDLKNYSKYQELSSALEKMFSCFTIGQYGSHGALGREMLSESKLKDLLHGSEFVLTYEDKDGDWMLVGDVPWEMFIGTCKRLRIMKStdaiglapravekcrnrn
Low Complexity Region (SEG)
MSPPPAVGEEKRGPGNVNLLASPASMGSVCQKSSVIKERNYMGLsdsssmdssvvssvsgesskssLNLKATELRLGLPGSQSPERGSELCLLGPAQLDEKPLFPLHPTSDSHYPSQKNVVSGNKRGFSDAMDGFLEGKYLSSSELLSPRAAPNLGLKSGSIQENLGPQTAKGKEMANQKAVQERPHVNNETITNHNGsasnsssapaakaQVVGWPPIRSFRKNSLATSSKNNDEVDGKAGSSALFVKVSMDGAPYLRKVDLKNYSKYQELSSALEKMFSCFTIGQYGSHGALGREMLSESKLKDLLHGSEFVLTYEDKDGDWMLVGDVPWEMFIGTCKRLRIMKSTDAIGLAPRAVEKCRNRN
Disordered region (IsUnstruct)
****************************************************************************************************************************************************************************************************************************************************ALFVKVSMDGAPYLRKVDLKNYSKYQELSSALEKMFSCFTIGQYGSHGALGREMLSESKLKDLLHGSEFVLTYEDKDGDWMLVGDVPWEMFIGTCKRLRIMKSTDAIGLA***********
Disordered Region (DISOPRED)
******************************************************************************************************************************************************************************************************************************************************FVKVSMDGAPYLRKVDLKNYSKYQELSSALEKMFSCFTIGQ**********************GSEFVLTYEDKDGDWMLVGDVPWEMFIGTCKRLRIMK*******************
Disordered Region (DISEMBL)
************GPGNVNLLASP********KSSVIKERNYMGL**********************LNLKATELRLGL*********SELCLLGPAQLDEKPLFPLHPTSDSHYPSQKNVVSGNKRGFSDAMDGFLEGKYLSSSELLSPRAAPNLGLKSGSIQENLGP****************RPHVNNETITNHN**************QVVGWPPIRSFRKNSLATSSKNNDEVDGKAGSSALFVKVSMDGAPYLRKVDLKNYSKYQELSSALEKMFSCFTIGQYGSHGALGREMLSESKLKDLLHGSEFVLTYEDKDGDWMLVGDVPWEMFIGTCKRLRIMKSTDAIGLAPRAVEKCRNRN
Disordered Region (DISPRO)
****PAVG***RGPGNVNLLASPASMGSVCQKSSVIKER*Y*GL*********************SLNLKATELRLGLPGS*******************KPLF******************************************************************************************************PAAKAQVVGWPPIRSFRKNSLATS***********GSSALFVKVSMDGAPYLRKVDLKNYSKYQELSSALEKMFSCFTIGQYGS*****REMLSESKLKDLLHGSEFVLTYEDKDGDWMLVGDVPWEMFIGTCKRLRIMKSTDAIGLAPRAVEK*****
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
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Transmembrane Helix (MEMSAT)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
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TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MSPPPAVGEEKRGPGNVNLLASPASMGSVCQKSSVIKERNYMGLSDSSSMDSSVVSSVSGESSKSSLNLKATELRLGLPGSQSPERGSELCLLGPAQLDEKPLFPLHPTSDSHYPSQKNVVSGNKRGFSDAMDGFLEGKYLSSSELLSPRAAPNLGLKSGSIQENLGPQTAKGKEMANQKAVQERPHVNNETITNHNGSASNSSSAPAAKAQVVGWPPIRSFRKNSLATSSKNNDEVDGKAGSSALFVKVSMDGAPYLRKVDLKNYSKYQELSSALEKMFSCFTIGQYGSHGALGREMLSESKLKDLLHGSEFVLTYEDKDGDWMLVGDVPWEMFIGTCKRLRIMKSTDAIGLAPRAVEKCRNRN
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	365	2.2.26 [Sep-21-2011]
Q38826	321	Auxin-responsive protein	no	no	0.819	0.931	0.607	2e-99
Q38827	338	Auxin-responsive protein	yes	no	0.832	0.899	0.584	5e-99
Q9ZSY8	305	Auxin-responsive protein	no	no	0.8	0.957	0.5	1e-78
P0C132	277	Auxin-responsive protein	yes	no	0.449	0.592	0.649	5e-57
Q38832	228	Auxin-responsive protein	no	no	0.605	0.969	0.430	2e-55
O24407	236	Auxin-responsive protein	no	no	0.427	0.661	0.606	4e-55
Q5Z749	266	Auxin-responsive protein	no	no	0.419	0.575	0.639	3e-54
P13089	243	Auxin-induced protein AUX	no	no	0.657	0.987	0.436	1e-53
Q38825	243	Auxin-responsive protein	no	no	0.619	0.930	0.443	6e-53
P93830	229	Auxin-responsive protein	no	no	0.605	0.965	0.411	1e-51

>sp|Q38826|IAA8_ARATH Auxin-responsive protein IAA8 OS=Arabidopsis thaliana GN=IAA8 PE=1 SV=1

 Score =  362 bits (930), Expect = 2e-99,   Method: Compositional matrix adjust.
 Identities = 204/336 (60%), Positives = 238/336 (70%), Gaps = 37/336 (11%)

Query: 33  SSVIKERNYMGLSDSSSMDSSVVSSVSGESSKSSLNLKATELRLGLPGSQSPERGSELCL 92
           S  +KERNY+GLSD SS+DSS + +V G   KS+LN KATELRLGLP SQSPER ++  L
Sbjct: 16  SPCLKERNYLGLSDCSSVDSSTIPNVVG---KSNLNFKATELRLGLPESQSPERETDFGL 72

Query: 93  LGPAQLDEKPLFPLHPTSD--SHYPSQKNVVSGNKRGFSDAMDGFLEGKYLSSSELLSPR 150
           L P   DEK LFPL P+ D  S     KNVVSGNKRGF+D  D F       S    S R
Sbjct: 73  LSPRTPDEKLLFPLLPSKDNGSATTGHKNVVSGNKRGFADTWDEF-------SGVKGSVR 125

Query: 151 AAPNLGLKSGSIQENLGPQTAKGKEMANQKAVQE-RPHVNNETITNHNGSASNSSSAPAA 209
                    G I   L P+    K+++  K++QE R H          G  +N   APAA
Sbjct: 126 PG-------GGINMMLSPKV---KDVS--KSIQEERSHAK--------GGLNN---APAA 162

Query: 210 KAQVVGWPPIRSFRKNSLATS-SKNNDEVDGKAGSSALFVKVSMDGAPYLRKVDLKNYSK 268
           KAQVVGWPPIRS+RKN++A+S SKN DEVDGK G   LFVKVSMDGAPYLRKVDL+ Y+ 
Sbjct: 163 KAQVVGWPPIRSYRKNTMASSTSKNTDEVDGKPGLGVLFVKVSMDGAPYLRKVDLRTYTS 222

Query: 269 YQELSSALEKMFSCFTIGQYGSHGALGREMLSESKLKDLLHGSEFVLTYEDKDGDWMLVG 328
           YQ+LSSALEKMFSCFT+GQ G HGA GRE +SE KLKDLLHGSEFVLTYEDKDGDWMLVG
Sbjct: 223 YQQLSSALEKMFSCFTLGQCGLHGAQGRERMSEIKLKDLLHGSEFVLTYEDKDGDWMLVG 282

Query: 329 DVPWEMFIGTCKRLRIMKSTDAIGLAPRAVEKCRNR 364
           DVPWE+F  TC++L+IMK +D+IGLAP AVEK +N+
Sbjct: 283 DVPWEIFTETCQKLKIMKGSDSIGLAPGAVEKSKNK 318

Aux/IAA proteins are short-lived transcriptional factors that function as repressors of early auxin response genes at low auxin concentrations. Repression is thought to result from the interaction with auxin response factors (ARFs), proteins that bind to the auxin-responsive promoter element (AuxRE). Formation of heterodimers with ARF proteins may alter their ability to modulate early auxin response genes expression.
Arabidopsis thaliana (taxid: 3702)

>sp|Q38827|IAA9_ARATH Auxin-responsive protein IAA9 OS=Arabidopsis thaliana GN=IAA9 PE=1 SV=1

 Score =  361 bits (926), Expect = 5e-99,   Method: Compositional matrix adjust.
 Identities = 194/332 (58%), Positives = 240/332 (72%), Gaps = 28/332 (8%)

Query: 36  IKERNYMGLSDSSSMDSSVVSSVSGESSKSSLNLKATELRLGLPGSQSPERGSELCLLGP 95
           +KE NY+GLSD SS+ SS +S ++ E  K++++LKATEL LGLPGSQSP R +EL LL P
Sbjct: 31  LKEHNYLGLSDCSSVGSSTLSPLA-EDDKATISLKATELTLGLPGSQSPARDTELNLLSP 89

Query: 96  AQLDEKPLFPLHPTSDSHYPS-QKNVVSGNKRGFSDAMDGFLEGKYLSSSELLSPRAAPN 154
           A+LDEKP FPL P+ D    S QKN  SGNKRGFSD MD F E K    +E         
Sbjct: 90  AKLDEKPFFPLLPSKDEICSSSQKNNASGNKRGFSDTMDQFAEAKSSVYTE--------- 140

Query: 155 LGLKSGSIQENLGPQTAKGKEMANQKAVQERPHVNNETITNHNGSASNSSSAPAAKAQVV 214
                   +  + P+ A  + +  +   Q  P          + + +NSSS PAAKAQ+V
Sbjct: 141 --------KNWMFPEAAATQSVTKKDVPQNIPK-------GQSSTTNNSSSPPAAKAQIV 185

Query: 215 GWPPIRSFRKNSLATSSKNNDEVDGKAGSSALFVKVSMDGAPYLRKVDLKNYSKYQELSS 274
           GWPP+RS+RKN+LAT+ KN+DEVDG+ GS ALFVKVSMDGAPYLRKVDL++Y+ Y ELSS
Sbjct: 186 GWPPVRSYRKNTLATTCKNSDEVDGRPGSGALFVKVSMDGAPYLRKVDLRSYTNYGELSS 245

Query: 275 ALEKMFSCFTIGQYGSHGALGREMLSESKLKDLLHGSEFVLTYEDKDGDWMLVGDVPWEM 334
           ALEKMF+ FT+GQ GS+GA G++MLSE+KLKDLL+G ++VLTYEDKDGDWMLVGDVPWEM
Sbjct: 246 ALEKMFTTFTLGQCGSNGAAGKDMLSETKLKDLLNGKDYVLTYEDKDGDWMLVGDVPWEM 305

Query: 335 FIGTCKRLRIMKSTDAIGL--APRAVEKCRNR 364
           FI  CK+L+IMK  DAIGL  APRA+EK + R
Sbjct: 306 FIDVCKKLKIMKGCDAIGLAAAPRAMEKSKMR 337

Aux/IAA proteins are short-lived transcriptional factors that function as repressors of early auxin response genes at low auxin concentrations. Repression is thought to result from the interaction with auxin response factors (ARFs), proteins that bind to the auxin-responsive promoter element (AuxRE). Formation of heterodimers with ARF proteins may alter their ability to modulate early auxin response genes expression.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9ZSY8|IAA27_ARATH Auxin-responsive protein IAA27 OS=Arabidopsis thaliana GN=IAA27 PE=1 SV=1

 Score =  293 bits (751), Expect = 1e-78,   Method: Compositional matrix adjust.
 Identities = 171/342 (50%), Positives = 222/342 (64%), Gaps = 50/342 (14%)

Query: 34  SVIKERNYMGLSDSSSMDSSVVSS-VSGESSKSSLNLKATELRLGLPGSQSPERGSELCL 92
           SV  E +Y+GLS+  +M+++ +S       + + LN KATELRLGLPGS+SPER      
Sbjct: 4   SVAAEHDYIGLSEFPTMEATTMSDKTKTRDNNNGLNFKATELRLGLPGSESPER------ 57

Query: 93  LGPAQLDEKPLFPLHPTSDSHYPSQKNVVSGNKRGFSDAMDGFLEGKYLSSSELLSPRAA 152
                +D + L      + S  P     VSG KR FSDA++        S+  + SP + 
Sbjct: 58  -----VDSRFL----ALNKSSCP-----VSGAKRVFSDAIND-------SNKWVFSPGST 96

Query: 153 PNLGLKSGSIQENLGPQTAKGKEMANQKAVQERPHVNNETITNHNGSASNSSSAPAAKAQ 212
                 +G +    GP+T+  K+   +     +P V  +          +S++APA+KAQ
Sbjct: 97  ----TATGDVGSGSGPRTSVVKD--GKSTTFTKPAVPVK-------EKKSSATAPASKAQ 143

Query: 213 VVGWPPIRSFRKNSLATSSK----NN---DEVDGKAG--SSALFVKVSMDGAPYLRKVDL 263
           VVGWPPIRSFRKNS+A+S      NN   +E + K+G     L+VKVSM+GAPYLRK+DL
Sbjct: 144 VVGWPPIRSFRKNSMASSQSQKPGNNSETEEAEAKSGPEQPCLYVKVSMEGAPYLRKIDL 203

Query: 264 KNYSKYQELSSALEKMFSCFTIGQYGSHGALGREMLSESKLKDLLHGSEFVLTYEDKDGD 323
           K Y  Y ELSSALEKMFSCFTIGQ+GSHG  GR+ L+ES+L DLL GSE+V+TYEDKD D
Sbjct: 204 KTYKSYLELSSALEKMFSCFTIGQFGSHGGCGRDGLNESRLTDLLRGSEYVVTYEDKDSD 263

Query: 324 WMLVGDVPWEMFIGTCKRLRIMKSTDAIGLAPRAVEKCRNRN 365
           WMLVGDVPWEMFI +CK+LRIMKS++AIGLAPR +EKCR+RN
Sbjct: 264 WMLVGDVPWEMFICSCKKLRIMKSSEAIGLAPRVMEKCRSRN 305

Aux/IAA proteins are short-lived transcriptional factors that function as repressors of early auxin response genes at low auxin concentrations. Repression is thought to result from the interaction with auxin response factors (ARFs), proteins that bind to the auxin-responsive promoter element (AuxRE). Formation of heterodimers with ARF proteins may alter their ability to modulate early auxin response genes expression.

Arabidopsis thaliana (taxid: 3702)

>sp|P0C132|IAA30_ORYSJ Auxin-responsive protein IAA30 OS=Oryza sativa subsp. japonica GN=IAA30 PE=2 SV=1

 Score =  221 bits (564), Expect = 5e-57,   Method: Compositional matrix adjust.
 Identities = 113/174 (64%), Positives = 131/174 (75%), Gaps = 10/174 (5%)

Query: 199 SASNSSSAPAAKAQVVGWPPIRSFRKNSLAT-SSKNNDEVDGKAGSSAL------FVKVS 251
           +A++     A KAQVVGWPP+RS+RKN LA  + K  D  DG    S        FVKVS
Sbjct: 107 AAADPEKPRAPKAQVVGWPPVRSYRKNILAVQADKGKDAADGGGDKSGAGAAAAAFVKVS 166

Query: 252 MDGAPYLRKVDLKNYSKYQELSSALEKMFSCFTIGQYGSHGALGREMLSESKLKDLLHGS 311
           MDGAPYLRKVDLK Y  Y ELS ALEKMFS FTIG  GSHG  G   ++ESK+ DLL+GS
Sbjct: 167 MDGAPYLRKVDLKMYKSYLELSKALEKMFSSFTIGNCGSHGVNG---MNESKIADLLNGS 223

Query: 312 EFVLTYEDKDGDWMLVGDVPWEMFIGTCKRLRIMKSTDAIGLAPRAVEKCRNRN 365
           E+V TYEDKDGDWMLVGDVPWEMF+ +CKRLRIMK ++AIGLAPRA+EKC+NR+
Sbjct: 224 EYVPTYEDKDGDWMLVGDVPWEMFVESCKRLRIMKGSEAIGLAPRAMEKCKNRS 277

Aux/IAA proteins are short-lived transcriptional factors that function as repressors of early auxin response genes at low auxin concentrations.

Oryza sativa subsp. japonica (taxid: 39947)

>sp|Q38832|IAA14_ARATH Auxin-responsive protein IAA14 OS=Arabidopsis thaliana GN=IAA14 PE=1 SV=2

 Score =  216 bits (550), Expect = 2e-55,   Method: Compositional matrix adjust.
 Identities = 131/304 (43%), Positives = 168/304 (55%), Gaps = 83/304 (27%)

Query: 67  LNLKATELRLGLPGSQSPERGSELCLLGPAQLDEKPLFPLHPTSDSHYPSQKNVVSGNKR 126
           +NLK TEL LGLPG                            T     P++  V  GNKR
Sbjct: 1   MNLKETELCLGLPGG---------------------------TETVESPAKSGV--GNKR 31

Query: 127 GFSDAMDGFLEGKYLSSSELLSPRAAPNLGLKSGSIQENLGPQTAKGKEMANQKAVQERP 186
           GFS+ +D  L                        ++Q N                  ++ 
Sbjct: 32  GFSETVDLKL------------------------NLQSN------------------KQG 49

Query: 187 HVNNETITNHNGSASNSS-----SAPAAKAQVVGWPPIRSFRKNSLATS-SKNNDEVDGK 240
           HV+     N NG+    +     S P AKAQVVGWPP+R++RKN +A   S   +E    
Sbjct: 50  HVD----LNTNGAPKEKTFLKDPSKPPAKAQVVGWPPVRNYRKNVMANQKSGEAEEAMSS 105

Query: 241 AGSSALFVKVSMDGAPYLRKVDLKNYSKYQELSSALEKMFSCFTIGQYGSHGALGREMLS 300
            G +  FVKVSMDGAPYLRKVDLK Y+ Y++LS AL KMFS FT+G YG+ G +  + ++
Sbjct: 106 GGGTVAFVKVSMDGAPYLRKVDLKMYTSYKDLSDALAKMFSSFTMGSYGAQGMI--DFMN 163

Query: 301 ESKLKDLLHGSEFVLTYEDKDGDWMLVGDVPWEMFIGTCKRLRIMKSTDAIGLAPRAVEK 360
           ESK+ DLL+ SE+V +YEDKDGDWMLVGDVPW MF+ +CKRLRIMK ++AIGLAPRA+EK
Sbjct: 164 ESKVMDLLNSSEYVPSYEDKDGDWMLVGDVPWPMFVESCKRLRIMKGSEAIGLAPRAMEK 223

Query: 361 CRNR 364
            +NR
Sbjct: 224 FKNR 227

Aux/IAA proteins are short-lived transcriptional factors that function as repressors of early auxin response genes at low auxin concentrations. Repression is thought to result from the interaction with auxin response factors (ARFs), proteins that bind to the auxin-responsive promoter element (AuxRE). Formation of heterodimers with ARF proteins may alter their ability to modulate early auxin response genes expression.

Arabidopsis thaliana (taxid: 3702)

>sp|O24407|IAA16_ARATH Auxin-responsive protein IAA16 OS=Arabidopsis thaliana GN=IAA16 PE=1 SV=1

 Score =  215 bits (548), Expect = 4e-55,   Method: Compositional matrix adjust.
 Identities = 105/173 (60%), Positives = 133/173 (76%), Gaps = 17/173 (9%)

Query: 207 PAAKAQVVGWPPIRSFRKNSLA-------TSSKNNDEVDGKAG--------SSALFVKVS 251
           P AKAQVVGWPP+RSFRKN ++        +++ ND+  G +G        ++  +VKVS
Sbjct: 65  PPAKAQVVGWPPVRSFRKNVMSGQKPTTGDATEGNDKTSGSSGATSSASACATVAYVKVS 124

Query: 252 MDGAPYLRKVDLKNYSKYQELSSALEKMFSCFTIGQYGSHGALGREMLSESKLKDLLHGS 311
           MDGAPYLRK+DLK Y  YQ+LS+AL KMFS FTIG YG  G   ++ ++ESKL DLL+GS
Sbjct: 125 MDGAPYLRKIDLKLYKTYQDLSNALSKMFSSFTIGNYGPQGM--KDFMNESKLIDLLNGS 182

Query: 312 EFVLTYEDKDGDWMLVGDVPWEMFIGTCKRLRIMKSTDAIGLAPRAVEKCRNR 364
           ++V TYEDKDGDWMLVGDVPWEMF+ +CKR+RIMK ++AIGLAPRA+EKC+NR
Sbjct: 183 DYVPTYEDKDGDWMLVGDVPWEMFVDSCKRIRIMKGSEAIGLAPRALEKCKNR 235

Aux/IAA proteins are short-lived transcriptional factors that function as repressors of early auxin response genes at low auxin concentrations. Repression is thought to result from the interaction with auxin response factors (ARFs), proteins that bind to the auxin-responsive promoter element (AuxRE). Formation of heterodimers with ARF proteins may alter their ability to modulate early auxin response genes expression.

Arabidopsis thaliana (taxid: 3702)

>sp|Q5Z749|IAA21_ORYSJ Auxin-responsive protein IAA21 OS=Oryza sativa subsp. japonica GN=IAA21 PE=2 SV=1

 Score =  212 bits (540), Expect = 3e-54,   Method: Compositional matrix adjust.
 Identities = 101/158 (63%), Positives = 121/158 (76%), Gaps = 5/158 (3%)

Query: 213 VVGWPPIRSFRKNSLATSS-----KNNDEVDGKAGSSALFVKVSMDGAPYLRKVDLKNYS 267
           VVGWPPIRS+RKN++A S      K++ E      S  L+VKVSMDGAPYLRKVDLK Y 
Sbjct: 109 VVGWPPIRSYRKNTMAMSQPALKGKDDGEAKQAPASGCLYVKVSMDGAPYLRKVDLKMYK 168

Query: 268 KYQELSSALEKMFSCFTIGQYGSHGALGREMLSESKLKDLLHGSEFVLTYEDKDGDWMLV 327
            Y+ELS ALEKMFSCFT+G   S+G  GR+ LS+ +L DL +G+E VLTYEDKD DWMLV
Sbjct: 169 NYKELSLALEKMFSCFTVGHGESNGKSGRDGLSDCRLMDLKNGTELVLTYEDKDEDWMLV 228

Query: 328 GDVPWEMFIGTCKRLRIMKSTDAIGLAPRAVEKCRNRN 365
           GDVPW MF  +C+RLRIMK +DA+GLAPRA +K +NRN
Sbjct: 229 GDVPWRMFTDSCRRLRIMKGSDAVGLAPRATDKSKNRN 266

Aux/IAA proteins are short-lived transcriptional factors that function as repressors of early auxin response genes at low auxin concentrations.

Oryza sativa subsp. japonica (taxid: 39947)

>sp|P13089|AUX28_SOYBN Auxin-induced protein AUX28 OS=Glycine max GN=AUX28 PE=2 SV=1

 Score =  210 bits (535), Expect = 1e-53,   Method: Compositional matrix adjust.
 Identities = 131/300 (43%), Positives = 165/300 (55%), Gaps = 60/300 (20%)

Query: 67  LNLKATELRLGLPGSQSPERGSELCLLGPAQLDEKPLFPLHPTSDSHYPSQKNVVSGNKR 126
           +  + TELRLGLPG+     G+E  L+                               KR
Sbjct: 1   MGFEETELRLGLPGNG----GTEEVLI------------------------------RKR 26

Query: 127 GFSDAMDGFLEGKYLSSSELLSPRAAPNLGLKSGSIQENLGPQTAKGKEMANQKAVQERP 186
           GFS+   G  E +  ++ +L+       L L S              KE A   A    P
Sbjct: 27  GFSETETGH-EDESATTVDLM-------LNLSS--------------KEAATTAAAAADP 64

Query: 187 HVNNETITNHNGSASNSSSAPAAKAQVVGWPPIRSFRKNSLATSSKNNDEVDGKAGSSAL 246
              ++T+           + P AK QVVGWPP+RSFRKN LA      +E +  +  +A 
Sbjct: 65  TDKHKTLPKEKTLLPADPAKPPAKTQVVGWPPVRSFRKNMLAVQKSVGEESEKNSSPNAS 124

Query: 247 FVKVSMDGAPYLRKVDLKNYSKYQELSSALEKMFSCFTIGQYGSHGALGREMLSESKLKD 306
           FVKVSMDGAPYLRKVDLK Y  Y+ELS +L KMFS FT G   S G   ++ ++ESKL D
Sbjct: 125 FVKVSMDGAPYLRKVDLKMYKSYRELSDSLGKMFSSFTFGNCESQGM--KDFMNESKLND 182

Query: 307 LLHGSEFVLTYEDKDGDWMLVGDVPWEMFIGTCKRLRIMKSTDAI--GLAPRAVEKCRNR 364
           LL+ S++V TYEDKDGDWMLVGDVPWEMF+ +CKRLRIMK  +AI  GLAPRA+ KC+NR
Sbjct: 183 LLNSSDYVPTYEDKDGDWMLVGDVPWEMFVESCKRLRIMKGKEAIGLGLAPRAMAKCKNR 242

Aux/IAA proteins are short-lived transcriptional factors that function as repressors of early auxin response genes at low auxin concentrations. Repression is thought to result from the interaction with auxin response factors (ARFs), proteins that bind to the auxin-responsive promoter element (AuxRE). Formation of heterodimers with ARF proteins may alter their ability to modulate early auxin response genes expression.

Glycine max (taxid: 3847)

>sp|Q38825|IAA7_ARATH Auxin-responsive protein IAA7 OS=Arabidopsis thaliana GN=IAA7 PE=1 SV=1

 Score =  208 bits (529), Expect = 6e-53,   Method: Compositional matrix adjust.
 Identities = 137/309 (44%), Positives = 176/309 (56%), Gaps = 83/309 (26%)

Query: 67  LNLKATELRLGLPGSQSPERGSELCLLGPAQLDEKPLFPLHPTSDSHYPSQKNVVSGNKR 126
           +NLKATEL LGLPG      G+E                         P++  V  G+KR
Sbjct: 6   MNLKATELCLGLPG------GAEAV---------------------ESPAKSAV--GSKR 36

Query: 127 GFSDAMDGFLEGKYLSSSELLSPRAAPNLGLKSGSIQENLGPQTAKGKEMANQKAV-QER 185
           GFS+ +D  L    L S+             K GS+            ++ N  AV +E+
Sbjct: 37  GFSETVDLMLN---LQSN-------------KEGSV------------DLKNVSAVPKEK 68

Query: 186 PHVNNETITNHNGSASNSSSAPAAKAQVVGWPPIRSFRKNSLA---TSSKNNDEVDGKAG 242
             + +              S P AKAQVVGWPP+R++RKN +    TSS   +    KAG
Sbjct: 69  TTLKD-------------PSKPPAKAQVVGWPPVRNYRKNMMTQQKTSSGAEEASSEKAG 115

Query: 243 SSAL------FVKVSMDGAPYLRKVDLKNYSKYQELSSALEKMFSCFTIGQYGSHGALGR 296
           +          VKVSMDGAPYLRKVDLK Y  YQ+LS AL KMFS FT+G YG+ G +  
Sbjct: 116 NFGGGAAGAGLVKVSMDGAPYLRKVDLKMYKSYQDLSDALAKMFSSFTMGNYGAQGMI-- 173

Query: 297 EMLSESKLKDLLHGSEFVLTYEDKDGDWMLVGDVPWEMFIGTCKRLRIMKSTDAIGLAPR 356
           + ++ESKL +LL+ SE+V +YEDKDGDWMLVGDVPWEMF+ +CKRLRIMK ++A+GLAPR
Sbjct: 174 DFMNESKLMNLLNSSEYVPSYEDKDGDWMLVGDVPWEMFVESCKRLRIMKGSEAVGLAPR 233

Query: 357 AVEK-CRNR 364
           A+EK C+NR
Sbjct: 234 AMEKYCKNR 242

Aux/IAA proteins are short-lived transcriptional factors that function as repressors of early auxin response genes at low auxin concentrations. Repression is thought to result from the interaction with auxin response factors (ARFs), proteins that bind to the auxin-responsive promoter element (AuxRE). Formation of heterodimers with ARF proteins may alter their ability to modulate early auxin response genes expression.

Arabidopsis thaliana (taxid: 3702)

>sp|P93830|IAA17_ARATH Auxin-responsive protein IAA17 OS=Arabidopsis thaliana GN=IAA17 PE=1 SV=2

 Score =  203 bits (517), Expect = 1e-51,   Method: Compositional matrix adjust.
 Identities = 123/299 (41%), Positives = 161/299 (53%), Gaps = 78/299 (26%)

Query: 67  LNLKATELRLGLPGSQSPERGSELCLLGPAQLDEKPLFPLHPTSDSHYPSQKNVVSGNKR 126
           LNL+ TEL LGLPG                              D+  P     V+GNKR
Sbjct: 7   LNLRETELCLGLPGG-----------------------------DTVAP-----VTGNKR 32

Query: 127 GFSDAMDGFLEGKYLSSSELLSPRAAPNLGLKSGSIQENLGPQTAKGKEMANQKAVQERP 186
           GFS+ +D                            ++ NL  + A  +       V    
Sbjct: 33  GFSETVD----------------------------LKLNLNNEPANKEGSTTHDVV---- 60

Query: 187 HVNNETITNHNGSASNSSSA-PAAKAQVVGWPPIRSFRKNSLATSSKNNDEVDGKAGSSA 245
                T  +   SA     A P AKAQVVGWPP+RS+RKN + +  K++         +A
Sbjct: 61  -----TFDSKEKSACPKDPAKPPAKAQVVGWPPVRSYRKNVMVSCQKSSG-----GPEAA 110

Query: 246 LFVKVSMDGAPYLRKVDLKNYSKYQELSSALEKMFSCFTIGQYGSHGALGREMLSESKLK 305
            FVKVSMDGAPYLRK+DL+ Y  Y ELS+AL  MFS FT+G++G    +  + ++E KL 
Sbjct: 111 AFVKVSMDGAPYLRKIDLRMYKSYDELSNALSNMFSSFTMGKHGGEEGM-IDFMNERKLM 169

Query: 306 DLLHGSEFVLTYEDKDGDWMLVGDVPWEMFIGTCKRLRIMKSTDAIGLAPRAVEKCRNR 364
           DL++  ++V +YEDKDGDWMLVGDVPW MF+ TCKRLR+MK +DAIGLAPRA+EKC++R
Sbjct: 170 DLVNSWDYVPSYEDKDGDWMLVGDVPWPMFVDTCKRLRLMKGSDAIGLAPRAMEKCKSR 228

Aux/IAA proteins are short-lived transcriptional factors that function as repressors of early auxin response genes at low auxin concentrations. Repression is thought to result from the interaction with auxin response factors (ARFs), proteins that bind to the auxin-responsive promoter element (AuxRE). Formation of heterodimers with ARF proteins may alter their ability to modulate early auxin response genes expression.

Arabidopsis thaliana (taxid: 3702)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	365
359843557	359	indole-3-acetic acid-induced protein 4 [	0.969	0.986	0.754	1e-149
225458994	359	PREDICTED: auxin-responsive protein IAA9	0.969	0.986	0.751	1e-148
29465672	359	Aux/IAA protein [Vitis vinifera]	0.969	0.986	0.748	1e-148
302398575	363	ARF domain class transcription factor [M	0.986	0.991	0.744	1e-146
429326556	365	hypothetical protein [Populus tomentosa]	0.991	0.991	0.758	1e-143
20269051	365	aux/IAA protein [Populus tremula x Popul	0.991	0.991	0.755	1e-142
147816409	359	hypothetical protein VITISV_007399 [Viti	0.939	0.955	0.746	1e-141
224067092	366	predicted protein [Populus trichocarpa]	0.991	0.989	0.756	1e-141
449461351	355	PREDICTED: auxin-responsive protein IAA9	0.964	0.991	0.707	1e-140
449530600	355	PREDICTED: LOW QUALITY PROTEIN: auxin-re	0.964	0.991	0.704	1e-139

>gi|359843557|gb|AEV89794.1| indole-3-acetic acid-induced protein 4 [Vitis vinifera]

 Score =  534 bits (1375), Expect = e-149,   Method: Compositional matrix adjust.
 Identities = 279/370 (75%), Positives = 307/370 (82%), Gaps = 16/370 (4%)

Query: 1   MSPPP-AVGEEKRGPGNVNLLASPASMGSVCQKSSVIKERNYMGLSDSSSMDSSVVSSVS 59
           MSPP   VGEE+ G  NV +LAS ASM SVCQ SS +KERNYMGLS+ SS+DSS +S+ S
Sbjct: 1   MSPPLLGVGEEE-GQSNVTILASSASMESVCQISSGLKERNYMGLSECSSVDSSAISTDS 59

Query: 60  GESSKSSLNLKATELRLGLPGSQSPERGSELCLLGPAQLDEKPLFPLHPTSDSHYPS-QK 118
            + +KSSLNLKATELRLGLPGS SP R  ELCLL   +LDEKPLFPLHP+ D  Y S QK
Sbjct: 60  -DGNKSSLNLKATELRLGLPGSLSPGREPELCLLSSTKLDEKPLFPLHPSKDLTYTSSQK 118

Query: 119 NVVSGNKRGFSDAMDGFLEGKYLSSSE---LLSPRAAPNLGLKSGSIQENLGPQTAKGKE 175
            VVSGNKRGF+DAM+GF EGK+L++SE   +LSPR +PN        +ENLG Q AK KE
Sbjct: 119 TVVSGNKRGFADAMNGFSEGKFLANSEVNVMLSPRPSPN--------KENLGSQPAKMKE 170

Query: 176 MANQKAVQERPHVNNETITNHNGSASNSSSAPAAKAQVVGWPPIRSFRKNSLATSSKNND 235
           MA+ K VQERP   NET  NH G+ +NSSSAPA KAQVVGWPPIRSFRKN+LAT+SKN  
Sbjct: 171 MASPKIVQERPRATNETPPNHTGTGNNSSSAPATKAQVVGWPPIRSFRKNTLATTSKNT- 229

Query: 236 EVDGKAGSSALFVKVSMDGAPYLRKVDLKNYSKYQELSSALEKMFSCFTIGQYGSHGALG 295
           EVDGKAG  ALFVKVSMDGAPYLRKVDL+NYS YQELSSALEKMFSCFTIGQYGSHGA G
Sbjct: 230 EVDGKAGPGALFVKVSMDGAPYLRKVDLRNYSAYQELSSALEKMFSCFTIGQYGSHGAPG 289

Query: 296 REMLSESKLKDLLHGSEFVLTYEDKDGDWMLVGDVPWEMFIGTCKRLRIMKSTDAIGLAP 355
           REMLSESKLKDLLHGSE+VLTYEDKDGDWMLVGDVPW+MFI TCKRLRIMKS DAIGLAP
Sbjct: 290 REMLSESKLKDLLHGSEYVLTYEDKDGDWMLVGDVPWQMFIETCKRLRIMKSCDAIGLAP 349

Query: 356 RAVEKCRNRN 365
           RAVEKC+NRN
Sbjct: 350 RAVEKCKNRN 359

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225458994|ref|XP_002285589.1| PREDICTED: auxin-responsive protein IAA9 [Vitis vinifera] gi|313765825|gb|ADR80320.1| indole-3-acetic acid-induced protein 9 [Vitis vinifera]

 Score =  532 bits (1371), Expect = e-148,   Method: Compositional matrix adjust.
 Identities = 278/370 (75%), Positives = 307/370 (82%), Gaps = 16/370 (4%)

Query: 1   MSPPP-AVGEEKRGPGNVNLLASPASMGSVCQKSSVIKERNYMGLSDSSSMDSSVVSSVS 59
           MSPP   VGEE+ G  NV +LAS ASM SVCQ SS +KERNYMGLS+ SS+DSS +S+ S
Sbjct: 1   MSPPLLGVGEEE-GQSNVTILASSASMESVCQISSGLKERNYMGLSECSSVDSSAISTDS 59

Query: 60  GESSKSSLNLKATELRLGLPGSQSPERGSELCLLGPAQLDEKPLFPLHPTSDSHYPS-QK 118
            + +KSSLNLKATELRLGLPGS SP R  ELCLL   +LDEKPLFPLHP+ D  Y S QK
Sbjct: 60  -DGNKSSLNLKATELRLGLPGSLSPGREPELCLLSSTKLDEKPLFPLHPSKDLTYTSSQK 118

Query: 119 NVVSGNKRGFSDAMDGFLEGKYLSSSE---LLSPRAAPNLGLKSGSIQENLGPQTAKGKE 175
            VVSGNKRGF+DAM+GF EGK+L++SE   +LSPR +PN        +ENLG Q AK KE
Sbjct: 119 TVVSGNKRGFADAMNGFSEGKFLANSEVNVMLSPRPSPN--------KENLGSQPAKMKE 170

Query: 176 MANQKAVQERPHVNNETITNHNGSASNSSSAPAAKAQVVGWPPIRSFRKNSLATSSKNND 235
           MA+ K VQERP   NET  NH G+ +N+SSAPA KAQVVGWPPIRSFRKN+LAT+SKN  
Sbjct: 171 MASPKIVQERPRATNETPPNHTGTGNNNSSAPATKAQVVGWPPIRSFRKNTLATTSKNT- 229

Query: 236 EVDGKAGSSALFVKVSMDGAPYLRKVDLKNYSKYQELSSALEKMFSCFTIGQYGSHGALG 295
           EVDGKAG  ALFVKVSMDGAPYLRKVDL+NYS YQELSSALEKMFSCFTIGQYGSHGA G
Sbjct: 230 EVDGKAGPGALFVKVSMDGAPYLRKVDLRNYSAYQELSSALEKMFSCFTIGQYGSHGAPG 289

Query: 296 REMLSESKLKDLLHGSEFVLTYEDKDGDWMLVGDVPWEMFIGTCKRLRIMKSTDAIGLAP 355
           REMLSESKLKDLLHGSE+VLTYEDKDGDWMLVGDVPW+MFI TCKRLRIMKS DAIGLAP
Sbjct: 290 REMLSESKLKDLLHGSEYVLTYEDKDGDWMLVGDVPWQMFIETCKRLRIMKSCDAIGLAP 349

Query: 356 RAVEKCRNRN 365
           RAVEKC+NRN
Sbjct: 350 RAVEKCKNRN 359

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|29465672|gb|AAL92850.1| Aux/IAA protein [Vitis vinifera]

 Score =  530 bits (1364), Expect = e-148,   Method: Compositional matrix adjust.
 Identities = 277/370 (74%), Positives = 306/370 (82%), Gaps = 16/370 (4%)

Query: 1   MSPPP-AVGEEKRGPGNVNLLASPASMGSVCQKSSVIKERNYMGLSDSSSMDSSVVSSVS 59
           MSPP   VGEE+ G  NV +LAS ASM SVCQ SS +KERNYMGLS+ SS+DSS +S+ S
Sbjct: 1   MSPPLLGVGEEE-GQSNVTILASSASMESVCQISSGLKERNYMGLSECSSVDSSAISTDS 59

Query: 60  GESSKSSLNLKATELRLGLPGSQSPERGSELCLLGPAQLDEKPLFPLHPTSDSHYPS-QK 118
            + +KSSLNLKATELRLGLPG  SP R  ELCLL   +LDEKPLFPLHP+ D  Y S QK
Sbjct: 60  -DGNKSSLNLKATELRLGLPGFLSPGREPELCLLSSTKLDEKPLFPLHPSKDLTYTSSQK 118

Query: 119 NVVSGNKRGFSDAMDGFLEGKYLSSSE---LLSPRAAPNLGLKSGSIQENLGPQTAKGKE 175
            VVSGNKRGF+DAM+GF EGK+L++SE   +LSPR +PN        +ENLG Q AK KE
Sbjct: 119 TVVSGNKRGFADAMNGFSEGKFLANSEVNVMLSPRPSPN--------KENLGSQPAKMKE 170

Query: 176 MANQKAVQERPHVNNETITNHNGSASNSSSAPAAKAQVVGWPPIRSFRKNSLATSSKNND 235
           MA+ K VQERP   NET  NH G+ +N+SSAPA KAQVVGWPPIRSFRKN+LAT+SKN  
Sbjct: 171 MASPKIVQERPRATNETPPNHTGTGNNNSSAPATKAQVVGWPPIRSFRKNTLATTSKNT- 229

Query: 236 EVDGKAGSSALFVKVSMDGAPYLRKVDLKNYSKYQELSSALEKMFSCFTIGQYGSHGALG 295
           EVDGKAG  ALFVKVSMDGAPYLRKVDL+NYS YQELSSALEKMFSCFTIGQYGSHGA G
Sbjct: 230 EVDGKAGPGALFVKVSMDGAPYLRKVDLRNYSAYQELSSALEKMFSCFTIGQYGSHGAPG 289

Query: 296 REMLSESKLKDLLHGSEFVLTYEDKDGDWMLVGDVPWEMFIGTCKRLRIMKSTDAIGLAP 355
           REMLSESKLKDLLHGSE+VLTYEDKDGDWMLVGDVPW+MFI TCKRLRIMKS DAIGLAP
Sbjct: 290 REMLSESKLKDLLHGSEYVLTYEDKDGDWMLVGDVPWQMFIETCKRLRIMKSCDAIGLAP 349

Query: 356 RAVEKCRNRN 365
           RAVEKC+NRN
Sbjct: 350 RAVEKCKNRN 359

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|302398575|gb|ADL36582.1| ARF domain class transcription factor [Malus x domestica]

 Score =  525 bits (1351), Expect = e-146,   Method: Compositional matrix adjust.
 Identities = 274/368 (74%), Positives = 303/368 (82%), Gaps = 8/368 (2%)

Query: 1   MSPPPAVGEEKRGPGNVNLLASPASMGSVCQKSSVIKERNYMGLSDSSSMDSSVVSSVSG 60
           MSPP    +E+ G  +V LLAS  SM SVCQ S  +KERNYMGLSD SS+DSS VS+VS 
Sbjct: 1   MSPPLLGVDEEEGQSDVTLLASSGSMESVCQNSLELKERNYMGLSDCSSVDSSKVSAVS- 59

Query: 61  ESSKSSLNLKATELRLGLPGSQSPERGSELCLLGPAQLDEKPLFPLHPTSDSHYPS-QKN 119
           + S+SSL+LKATELRLGLPGSQSPER SE  ++   QLDEKPLFPLHP  D HY S QK 
Sbjct: 60  DGSRSSLHLKATELRLGLPGSQSPERDSEARVIS-TQLDEKPLFPLHPLKDGHYSSLQKT 118

Query: 120 VVSGNKRGFSDAMDGFLEGKYLSSSE--LLSPRAAPNLGLKSGSIQENLGPQTAKGKEMA 177
           VVSGNKRGFSDAMD F EGKY +S    LLSPR +PN GLKSGS  EN G Q  K KE+A
Sbjct: 119 VVSGNKRGFSDAMDEFSEGKYANSEVNLLLSPRPSPNFGLKSGSALENPGTQPPKTKEVA 178

Query: 178 NQKAVQERPHVNNETITNHNGSASNSSSAPAAKAQVVGWPPIRSFRKNSLATSSKNNDEV 237
             K VQERPH  NE+  NHN   +++S APA+KAQVVGWPPIRSFRKNSLAT+SKN +EV
Sbjct: 179 PAKVVQERPHAVNESRPNHN--ENSTSGAPASKAQVVGWPPIRSFRKNSLATTSKNTEEV 236

Query: 238 DGKAGSSALFVKVSMDGAPYLRKVDLKNYSKYQELSSALEKMFSCFTIGQYGSHGALGRE 297
           DGK+G  ALFVKVS+DGAPYLRKVDLKNYS YQELSSALEKMF CFTIGQYGSHGA GRE
Sbjct: 237 DGKSGPGALFVKVSLDGAPYLRKVDLKNYSAYQELSSALEKMFRCFTIGQYGSHGAPGRE 296

Query: 298 MLSESKLKDLLHGSEFVLTYEDKDGDWMLVGDVPWEMFIGTCKRLRIMKSTDAIGLAPRA 357
            +SESKLKDLLHGSE+VLTYEDKDGDWMLVGDVPW+MFI TCKR+RIMKS+DAIGLAPRA
Sbjct: 297 -ISESKLKDLLHGSEYVLTYEDKDGDWMLVGDVPWDMFIDTCKRMRIMKSSDAIGLAPRA 355

Query: 358 VEKCRNRN 365
           +EKCRNRN
Sbjct: 356 MEKCRNRN 363

Source: Malus x domestica

Species: Malus x domestica

Genus: Malus

Family: Rosaceae

Order: Rosales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|429326556|gb|AFZ78618.1| hypothetical protein [Populus tomentosa]

 Score =  513 bits (1321), Expect = e-143,   Method: Compositional matrix adjust.
 Identities = 279/368 (75%), Positives = 304/368 (82%), Gaps = 6/368 (1%)

Query: 1   MSPPPAVGEEKRGPGNVNLLASPASMGSVCQKSSVIKERNYMGLSDSSSMDSSVVSSVSG 60
           MSPP     E+ G  NV LLASPAS  S C     +KERNYMGLSD SS+DSS VS+ S 
Sbjct: 1   MSPPLLGVVEEEGHSNVTLLASPASAESACLNGLELKERNYMGLSDCSSVDSSAVSAASD 60

Query: 61  ESSKSSLNLKATELRLGLPGSQSPERGSELCLLGPAQLDEKPLFPLHPTSDSHYPSQKNV 120
           E  K+SLNLKATELRLGLPGSQSPER  EL LL  A LDEKP FPLHP++D HY +QKNV
Sbjct: 61  ER-KTSLNLKATELRLGLPGSQSPERNHELSLLSSALLDEKPFFPLHPSNDGHYSTQKNV 119

Query: 121 VSGNKRGFSDAMDGFLEGKYLSSSE---LLSPRAAPNLGLKSGSIQENLGPQTAKGKEMA 177
           VSGNKR FSDAMD F E K+LS+SE   +LSPR +PN+GLK G + ENLG Q AK KE+ 
Sbjct: 120 VSGNKRVFSDAMDEFSESKFLSNSEVNAMLSPRPSPNMGLKPGML-ENLGVQQAKVKEIV 178

Query: 178 NQKAVQERPHVNNETITNHNGSASNSSSAPAAKAQVVGWPPIRSFRKNSLATSSKNNDEV 237
             KA QERPHV NET    N SA+NSS APA KAQVVGWPPI+SFRKNSLAT+SKN +EV
Sbjct: 179 TPKAGQERPHVANETRPLRNSSANNSS-APAPKAQVVGWPPIKSFRKNSLATTSKNTEEV 237

Query: 238 DGKAGSSALFVKVSMDGAPYLRKVDLKNYSKYQELSSALEKMFSCFTIGQYGSHGALGRE 297
           DGKAG  ALF+KVSMDGAPYLRKVDL+NYS YQELSSALEKMFSCFTIGQYGSHGA GRE
Sbjct: 238 DGKAGPGALFIKVSMDGAPYLRKVDLRNYSAYQELSSALEKMFSCFTIGQYGSHGAPGRE 297

Query: 298 MLSESKLKDLLHGSEFVLTYEDKDGDWMLVGDVPWEMFIGTCKRLRIMKSTDAIGLAPRA 357
           MLSESKLKDLLHGSE+VLTYEDKDGDWMLVGDVPWEMFI TCKRLRIMKS+DAIGLAPRA
Sbjct: 298 MLSESKLKDLLHGSEYVLTYEDKDGDWMLVGDVPWEMFIETCKRLRIMKSSDAIGLAPRA 357

Query: 358 VEKCRNRN 365
           +EKC+NRN
Sbjct: 358 MEKCKNRN 365

Source: Populus tomentosa

Species: Populus tomentosa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|20269051|emb|CAC84706.1| aux/IAA protein [Populus tremula x Populus tremuloides]

 Score =  511 bits (1315), Expect = e-142,   Method: Compositional matrix adjust.
 Identities = 278/368 (75%), Positives = 303/368 (82%), Gaps = 6/368 (1%)

Query: 1   MSPPPAVGEEKRGPGNVNLLASPASMGSVCQKSSVIKERNYMGLSDSSSMDSSVVSSVSG 60
           MSPP     E+ G  NV LLASPAS  S C     +KERNYMGLSD SS+DSS VS+ S 
Sbjct: 1   MSPPLLGVVEEEGQSNVTLLASPASAESACLNGLELKERNYMGLSDCSSVDSSAVSAASD 60

Query: 61  ESSKSSLNLKATELRLGLPGSQSPERGSELCLLGPAQLDEKPLFPLHPTSDSHYPSQKNV 120
           E  K+SLNLKATELRLGLPGSQSPER  EL LL  A LDEKP FPLHP++D HY +QKNV
Sbjct: 61  ER-KASLNLKATELRLGLPGSQSPERNHELSLLSSALLDEKPFFPLHPSNDGHYSTQKNV 119

Query: 121 VSGNKRGFSDAMDGFLEGKYLSSSE---LLSPRAAPNLGLKSGSIQENLGPQTAKGKEMA 177
           VSGNKR FSDAMD F E K+LS+SE   +LSPR +PN+GLK G + ENLG Q AK KE+ 
Sbjct: 120 VSGNKRVFSDAMDEFSESKFLSNSEVNAMLSPRPSPNMGLKPGML-ENLGVQQAKVKEIV 178

Query: 178 NQKAVQERPHVNNETITNHNGSASNSSSAPAAKAQVVGWPPIRSFRKNSLATSSKNNDEV 237
             KA QERPH  NET    N SA+NSS APA KAQVVGWPPI+SFRKNSLAT+SKN +EV
Sbjct: 179 APKAGQERPHAANETRPLRNSSANNSS-APAPKAQVVGWPPIKSFRKNSLATTSKNTEEV 237

Query: 238 DGKAGSSALFVKVSMDGAPYLRKVDLKNYSKYQELSSALEKMFSCFTIGQYGSHGALGRE 297
           DGKAG  ALF+KVSMDGAPYLRKVDL+NYS YQELSSALEKMFSCFTIGQYGSHGA GRE
Sbjct: 238 DGKAGPGALFIKVSMDGAPYLRKVDLRNYSAYQELSSALEKMFSCFTIGQYGSHGAPGRE 297

Query: 298 MLSESKLKDLLHGSEFVLTYEDKDGDWMLVGDVPWEMFIGTCKRLRIMKSTDAIGLAPRA 357
           MLSESKLKDLLHGSE+VLTYEDKDGDWMLVGDVPWEMFI TCKRLRIMKS+DAIGLAPRA
Sbjct: 298 MLSESKLKDLLHGSEYVLTYEDKDGDWMLVGDVPWEMFIETCKRLRIMKSSDAIGLAPRA 357

Query: 358 VEKCRNRN 365
           +EKC+NRN
Sbjct: 358 MEKCKNRN 365

Source: Populus tremula x Populus tremuloides

Species: Populus tremula x Populus tremuloides

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|147816409|emb|CAN77436.1| hypothetical protein VITISV_007399 [Vitis vinifera]

 Score =  508 bits (1309), Expect = e-141,   Method: Compositional matrix adjust.
 Identities = 268/359 (74%), Positives = 296/359 (82%), Gaps = 16/359 (4%)

Query: 1   MSPPP-AVGEEKRGPGNVNLLASPASMGSVCQKSSVIKERNYMGLSDSSSMDSSVVSSVS 59
           MSPP   VGEE+ G  NV +LAS ASM SVCQ SS +KERNYMGLS+ SS+DSS +S+ S
Sbjct: 1   MSPPLLGVGEEE-GQSNVTILASSASMESVCQISSGLKERNYMGLSECSSVDSSAISTDS 59

Query: 60  GESSKSSLNLKATELRLGLPGSQSPERGSELCLLGPAQLDEKPLFPLHPTSDSHYPS-QK 118
            + +KSSLNLKATELRLGLPGS SP R  ELCLL   +LDEKPLFPLHP+ D  Y S QK
Sbjct: 60  -DGNKSSLNLKATELRLGLPGSLSPGREPELCLLSSTKLDEKPLFPLHPSKDLTYTSSQK 118

Query: 119 NVVSGNKRGFSDAMDGFLEGKYLSSSE---LLSPRAAPNLGLKSGSIQENLGPQTAKGKE 175
            VVSGNKRGF+DAM+GF EGK+L++SE   +LSPR +PN        +ENLG Q AK KE
Sbjct: 119 TVVSGNKRGFADAMNGFSEGKFLANSEVNVMLSPRPSPN--------KENLGSQPAKMKE 170

Query: 176 MANQKAVQERPHVNNETITNHNGSASNSSSAPAAKAQVVGWPPIRSFRKNSLATSSKNND 235
           MA+ K VQERP   NET  NH G+ +N+SSAPA KAQVVGWPPIRSFRKN+LAT+SKN  
Sbjct: 171 MASPKIVQERPRATNETPPNHTGTGNNNSSAPATKAQVVGWPPIRSFRKNTLATTSKNT- 229

Query: 236 EVDGKAGSSALFVKVSMDGAPYLRKVDLKNYSKYQELSSALEKMFSCFTIGQYGSHGALG 295
           EVDGKAG  ALFVKVSMDGAPYLRKVDL+NYS YQELSSALEKMFSCFTIGQYGSHGA G
Sbjct: 230 EVDGKAGPGALFVKVSMDGAPYLRKVDLRNYSAYQELSSALEKMFSCFTIGQYGSHGAPG 289

Query: 296 REMLSESKLKDLLHGSEFVLTYEDKDGDWMLVGDVPWEMFIGTCKRLRIMKSTDAIGLA 354
           REMLSESKLKDLLHGSE+VLTYEDKDGDWMLVGDVPW+MFI TCKRLRIMKS DAIGLA
Sbjct: 290 REMLSESKLKDLLHGSEYVLTYEDKDGDWMLVGDVPWQMFIETCKRLRIMKSCDAIGLA 348

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224067092|ref|XP_002302351.1| predicted protein [Populus trichocarpa] gi|118486701|gb|ABK95187.1| unknown [Populus trichocarpa] gi|222844077|gb|EEE81624.1| predicted protein [Populus trichocarpa]

 Score =  506 bits (1304), Expect = e-141,   Method: Compositional matrix adjust.
 Identities = 279/369 (75%), Positives = 303/369 (82%), Gaps = 7/369 (1%)

Query: 1   MSPPPAVGEEKRGPGNVNLLASPASMGSVCQKSSVIKERNYMGLSDSSSMDSSVVSSVSG 60
           MSPP     E+ G  NV LLASPAS  S C     +KERNYMGLSD SS+DSS VS+ S 
Sbjct: 1   MSPPLLGVVEEEGHSNVTLLASPASAESACLNGLELKERNYMGLSDCSSVDSSAVSAASD 60

Query: 61  ESSKSSLNLKATELRLGLPGSQSPERGSELCLLGPAQLDEKPLFPLHPTSDSHYPS-QKN 119
           E  K+SLNLKATELRLGLPGSQSPER  EL LL  A LDEKP FPLHP++D HY S QKN
Sbjct: 61  ER-KTSLNLKATELRLGLPGSQSPERNHELSLLSSALLDEKPFFPLHPSNDGHYSSTQKN 119

Query: 120 VVSGNKRGFSDAMDGFLEGKYLSSSE---LLSPRAAPNLGLKSGSIQENLGPQTAKGKEM 176
           VVSGNKR FSDAMD F E K+LS+SE   +LSPR +PN+GLK G + ENLG Q AK KE+
Sbjct: 120 VVSGNKRVFSDAMDEFSESKFLSNSEVNAMLSPRPSPNMGLKPGML-ENLGVQQAKVKEI 178

Query: 177 ANQKAVQERPHVNNETITNHNGSASNSSSAPAAKAQVVGWPPIRSFRKNSLATSSKNNDE 236
              KA QERPH  NET    N SA+NSS APA KAQVVGWPPI+SFRKNSLAT+SKN +E
Sbjct: 179 VAPKAGQERPHAANETRPLRNSSANNSS-APAPKAQVVGWPPIKSFRKNSLATTSKNTEE 237

Query: 237 VDGKAGSSALFVKVSMDGAPYLRKVDLKNYSKYQELSSALEKMFSCFTIGQYGSHGALGR 296
           VDGKAG  ALF+KVSMDGAPYLRKVDL+NYS YQELSSALEKMFSCFTIGQYGSHGA GR
Sbjct: 238 VDGKAGPGALFIKVSMDGAPYLRKVDLRNYSAYQELSSALEKMFSCFTIGQYGSHGAPGR 297

Query: 297 EMLSESKLKDLLHGSEFVLTYEDKDGDWMLVGDVPWEMFIGTCKRLRIMKSTDAIGLAPR 356
           EMLSESKLKDLLHGSE+VLTYEDKDGDWMLVGDVPWEMFI TCKRLRIMKS+DAIGLAPR
Sbjct: 298 EMLSESKLKDLLHGSEYVLTYEDKDGDWMLVGDVPWEMFIETCKRLRIMKSSDAIGLAPR 357

Query: 357 AVEKCRNRN 365
           A+EKC+NRN
Sbjct: 358 AMEKCKNRN 366

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449461351|ref|XP_004148405.1| PREDICTED: auxin-responsive protein IAA9-like [Cucumis sativus] gi|6136832|dbj|BAA85821.1| Aux/IAA protein [Cucumis sativus]

 Score =  504 bits (1298), Expect = e-140,   Method: Compositional matrix adjust.
 Identities = 259/366 (70%), Positives = 294/366 (80%), Gaps = 14/366 (3%)

Query: 1   MSPPPA-VGEEKRGPGNVNLLASPASMGSVCQKSSVIKERNYMGLSDSSSMDSSVVSSVS 59
           MSPP   VGE +    NV LLAS  SM SV   +   +ERNYMGLSDSSS DS + ++ S
Sbjct: 1   MSPPLLDVGEVEESRSNVTLLASSNSMESVSPNNLEFEERNYMGLSDSSSEDSCMTATKS 60

Query: 60  GESSKSSLNLKATELRLGLPGSQSPERGSELCLLGPAQLDEKPLFPLHPTSDSHYPS-QK 118
            + +K SLNLKATELRLGLPGS+SPER  + CL   +QLDEKPLFPLHP+SD  Y S QK
Sbjct: 61  -DGNKPSLNLKATELRLGLPGSESPERDPDNCLRSSSQLDEKPLFPLHPSSDGLYSSPQK 119

Query: 119 NVVSGNKRGFSDAMDGFLEGKYLSSSELLSPRAAPNLGLKSGSIQENLGPQTAKGKEMAN 178
            VVSGNKRGFSDAM+ F E KY +           N+GLK+GS+ ENLG Q  K KE   
Sbjct: 120 TVVSGNKRGFSDAMNEFSEEKYHA-----------NIGLKAGSLLENLGSQMGKVKEPTT 168

Query: 179 QKAVQERPHVNNETITNHNGSASNSSSAPAAKAQVVGWPPIRSFRKNSLATSSKNNDEVD 238
           QKAVQERP  N+E+  +HN +A+N++S P +KAQVVGWPPIRSFRKN+LAT+SKNNDEVD
Sbjct: 169 QKAVQERPQENSESRPSHNETANNNTSTPVSKAQVVGWPPIRSFRKNTLATTSKNNDEVD 228

Query: 239 GKAGSSALFVKVSMDGAPYLRKVDLKNYSKYQELSSALEKMFSCFTIGQYGSHGALGREM 298
           GKA + ALF+KVSMDGAPYLRKVDL+NYS YQELSSALEKMFSCFTIGQYG+HGALG E 
Sbjct: 229 GKAMAGALFIKVSMDGAPYLRKVDLRNYSAYQELSSALEKMFSCFTIGQYGAHGALGMEK 288

Query: 299 LSESKLKDLLHGSEFVLTYEDKDGDWMLVGDVPWEMFIGTCKRLRIMKSTDAIGLAPRAV 358
           +SESKLKDLLHGSE+VLTYEDKDGDWMLVGDVPWEMFI +CKRLRIMKS+DAIGLAPRAV
Sbjct: 289 MSESKLKDLLHGSEYVLTYEDKDGDWMLVGDVPWEMFIDSCKRLRIMKSSDAIGLAPRAV 348

Query: 359 EKCRNR 364
           EKCRNR
Sbjct: 349 EKCRNR 354

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449530600|ref|XP_004172282.1| PREDICTED: LOW QUALITY PROTEIN: auxin-responsive protein IAA9-like [Cucumis sativus]

 Score =  502 bits (1293), Expect = e-139,   Method: Compositional matrix adjust.
 Identities = 258/366 (70%), Positives = 293/366 (80%), Gaps = 14/366 (3%)

Query: 1   MSPPPA-VGEEKRGPGNVNLLASPASMGSVCQKSSVIKERNYMGLSDSSSMDSSVVSSVS 59
           MSPP   VGE +    NV LLAS  SM SV   +   +ERNYMGLSDSSS DS + ++ S
Sbjct: 1   MSPPLLDVGEVEESRSNVTLLASSNSMESVSPNNLEFEERNYMGLSDSSSEDSCMTATKS 60

Query: 60  GESSKSSLNLKATELRLGLPGSQSPERGSELCLLGPAQLDEKPLFPLHPTSDSHYPS-QK 118
            + +K SLNLKATELRLGLPGS+SPER  + CL   +QLDEKPLFPLHP+SD  Y S QK
Sbjct: 61  -DGNKPSLNLKATELRLGLPGSESPERDPDNCLRSSSQLDEKPLFPLHPSSDGLYSSPQK 119

Query: 119 NVVSGNKRGFSDAMDGFLEGKYLSSSELLSPRAAPNLGLKSGSIQENLGPQTAKGKEMAN 178
            VVSGNKRGF DAM+ F E KY +           N+GLK+GS+ ENLG Q  K KE   
Sbjct: 120 TVVSGNKRGFXDAMNEFSEEKYHA-----------NIGLKAGSLLENLGSQMGKVKEPTT 168

Query: 179 QKAVQERPHVNNETITNHNGSASNSSSAPAAKAQVVGWPPIRSFRKNSLATSSKNNDEVD 238
           QKAVQERP  N+E+  +HN +A+N++S P +KAQVVGWPPIRSFRKN+LAT+SKNNDEVD
Sbjct: 169 QKAVQERPQENSESRPSHNETANNNTSTPVSKAQVVGWPPIRSFRKNTLATTSKNNDEVD 228

Query: 239 GKAGSSALFVKVSMDGAPYLRKVDLKNYSKYQELSSALEKMFSCFTIGQYGSHGALGREM 298
           GKA + ALF+KVSMDGAPYLRKVDL+NYS YQELSSALEKMFSCFTIGQYG+HGALG E 
Sbjct: 229 GKAMAGALFIKVSMDGAPYLRKVDLRNYSAYQELSSALEKMFSCFTIGQYGAHGALGMEK 288

Query: 299 LSESKLKDLLHGSEFVLTYEDKDGDWMLVGDVPWEMFIGTCKRLRIMKSTDAIGLAPRAV 358
           +SESKLKDLLHGSE+VLTYEDKDGDWMLVGDVPWEMFI +CKRLRIMKS+DAIGLAPRAV
Sbjct: 289 MSESKLKDLLHGSEYVLTYEDKDGDWMLVGDVPWEMFIDSCKRLRIMKSSDAIGLAPRAV 348

Query: 359 EKCRNR 364
           EKCRNR
Sbjct: 349 EKCRNR 354

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	365
TAIR|locus:2169955	338	IAA9 "indole-3-acetic acid ind	0.520	0.562	0.613	1.7e-86
TAIR|locus:2119976	305	PAP2 "AT4G29080" [Arabidopsis	0.616	0.737	0.543	9.8e-68
TAIR|locus:2129900	228	IAA14 "indole-3-acetic acid in	0.416	0.666	0.612	8.1e-57
TAIR|locus:2094598	243	IAA7 "indole-3-acetic acid 7"	0.416	0.625	0.609	1.5e-55
UNIPROTKB|Q5Z749	266	IAA21 "Auxin-responsive protei	0.564	0.774	0.518	1.6e-55
UNIPROTKB|Q75GB1	257	IAA17 "Auxin-responsive protei	0.383	0.544	0.634	2.4e-55
TAIR|locus:2084933	236	IAA16 "indoleacetic acid-induc	0.416	0.644	0.615	6.9e-55
UNIPROTKB|Q5NB25	263	IAA3 "Auxin-responsive protein	0.380	0.528	0.615	3.3e-51
UNIPROTKB|Q6AT33	281	IAA19 "Auxin-responsive protei	0.602	0.782	0.453	9.8e-50
TAIR|locus:2018374	229	AXR3 "AT1G04250" [Arabidopsis	0.402	0.641	0.581	1.6e-49

TAIR|locus:2169955 IAA9 "indole-3-acetic acid inducible 9" [Arabidopsis thaliana (taxid:3702)]

 Score = 620 (223.3 bits), Expect = 1.7e-86, Sum P(2) = 1.7e-86
 Identities = 122/199 (61%), Positives = 152/199 (76%)

Query:   168 PQTAKGKEMANQKAVQERPHVNNETITNHNGXXXXXXXXXXXXXQVVGWPPIRSFRKNSL 227
             P+ A  + +  +   Q  P   + T TN++              Q+VGWPP+RS+RKN+L
Sbjct:   146 PEAAATQSVTKKDVPQNIPKGQSST-TNNSSSPPAAKA------QIVGWPPVRSYRKNTL 198

Query:   228 ATSSKNNDEVDGKAGSSALFVKVSMDGAPYLRKVDLKNYSKYQELSSALEKMFSCFTIGQ 287
             AT+ KN+DEVDG+ GS ALFVKVSMDGAPYLRKVDL++Y+ Y ELSSALEKMF+ FT+GQ
Sbjct:   199 ATTCKNSDEVDGRPGSGALFVKVSMDGAPYLRKVDLRSYTNYGELSSALEKMFTTFTLGQ 258

Query:   288 YGSHGALGREMLSESKLKDLLHGSEFVLTYEDKDGDWMLVGDVPWEMFIGTCKRLRIMKS 347
              GS+GA G++MLSE+KLKDLL+G ++VLTYEDKDGDWMLVGDVPWEMFI  CK+L+IMK 
Sbjct:   259 CGSNGAAGKDMLSETKLKDLLNGKDYVLTYEDKDGDWMLVGDVPWEMFIDVCKKLKIMKG 318

Query:   348 TDAIGLA--PRAVEKCRNR 364
              DAIGLA  PRA+EK + R
Sbjct:   319 CDAIGLAAAPRAMEKSKMR 337

GO:0005634 "nucleus" evidence=ISM;IEA;ISS

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

GO:0046983 "protein dimerization activity" evidence=IEA

GO:0009734 "auxin mediated signaling pathway" evidence=TAS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

GO:0009733 "response to auxin stimulus" evidence=TAS

GO:0009616 "virus induced gene silencing" evidence=RCA

GO:0010050 "vegetative phase change" evidence=RCA

TAIR|locus:2119976 PAP2 "AT4G29080" [Arabidopsis thaliana (taxid:3702)]

 Score = 607 (218.7 bits), Expect = 9.8e-68, Sum P(2) = 9.8e-68
 Identities = 138/254 (54%), Positives = 170/254 (66%)

Query:   121 VSGNKRGFSDAMDGFLEGKYLSSSELLSPRAAPNLGLKSGSIQENLGPQTAKGKEMANQK 180
             VSG KR FSDA++     K++ S    S  A  ++G  SGS     GP+T+  K+   + 
Sbjct:    72 VSGAKRVFSDAIND--SNKWVFSPG--STTATGDVG--SGS-----GPRTSVVKD--GKS 118

Query:   181 AVQERPHVNNETITNHNGXXXXXXXXXXXXXQVVGWPPIRSFRKNSLATSSK----NN-- 234
                 +P V  +                    QVVGWPPIRSFRKNS+A+S      NN  
Sbjct:   119 TTFTKPAVPVKE-------KKSSATAPASKAQVVGWPPIRSFRKNSMASSQSQKPGNNSE 171

Query:   235 -DEVDGKAGSS--ALFVKVSMDGAPYLRKVDLKNYSKYQELSSALEKMFSCFTIGQYGSH 291
              +E + K+G     L+VKVSM+GAPYLRK+DLK Y  Y ELSSALEKMFSCFTIGQ+GSH
Sbjct:   172 TEEAEAKSGPEQPCLYVKVSMEGAPYLRKIDLKTYKSYLELSSALEKMFSCFTIGQFGSH 231

Query:   292 GALGREMLSESKLKDLLHGSEFVLTYEDKDGDWMLVGDVPWEMFIGTCKRLRIMKSTDAI 351
             G  GR+ L+ES+L DLL GSE+V+TYEDKD DWMLVGDVPWEMFI +CK+LRIMKS++AI
Sbjct:   232 GGCGRDGLNESRLTDLLRGSEYVVTYEDKDSDWMLVGDVPWEMFICSCKKLRIMKSSEAI 291

Query:   352 GLAPRAVEKCRNRN 365
             GLAPR +EKCR+RN
Sbjct:   292 GLAPRVMEKCRSRN 305

GO:0005622 "intracellular" evidence=ISS

GO:0005634 "nucleus" evidence=ISM;IEA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

GO:0006417 "regulation of translation" evidence=ISS

GO:0009733 "response to auxin stimulus" evidence=ISS;TAS

GO:0046983 "protein dimerization activity" evidence=IEA

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

GO:0007389 "pattern specification process" evidence=RCA

GO:0048438 "floral whorl development" evidence=RCA

GO:0048439 "flower morphogenesis" evidence=RCA

TAIR|locus:2129900 IAA14 "indole-3-acetic acid inducible 14" [Arabidopsis thaliana (taxid:3702)]

 Score = 511 (184.9 bits), Expect = 8.1e-57, Sum P(3) = 8.1e-57
 Identities = 95/155 (61%), Positives = 121/155 (78%)

Query:   212 QVVGWPPIRSFRKNSLATSSKNN-DEVDGKAGSSALFVKVSMDGAPYLRKVDLKNYSKYQ 270
             QVVGWPP+R++RKN +A       +E     G +  FVKVSMDGAPYLRKVDLK Y+ Y+
Sbjct:    76 QVVGWPPVRNYRKNVMANQKSGEAEEAMSSGGGTVAFVKVSMDGAPYLRKVDLKMYTSYK 135

Query:   271 ELSSALEKMFSCFTIGQYGSHGALGREMLSESKLKDLLHGSEFVLTYEDKDGDWMLVGDV 330
             +LS AL KMFS FT+G YG+ G +  + ++ESK+ DLL+ SE+V +YEDKDGDWMLVGDV
Sbjct:   136 DLSDALAKMFSSFTMGSYGAQGMI--DFMNESKVMDLLNSSEYVPSYEDKDGDWMLVGDV 193

Query:   331 PWEMFIGTCKRLRIMKSTDAIGLAPRAVEKCRNRN 365
             PW MF+ +CKRLRIMK ++AIGLAPRA+EK +NR+
Sbjct:   194 PWPMFVESCKRLRIMKGSEAIGLAPRAMEKFKNRS 228

GO:0005634 "nucleus" evidence=ISM;IEA;IDA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

GO:0010102 "lateral root morphogenesis" evidence=IMP

GO:0045892 "negative regulation of transcription, DNA-dependent" evidence=IMP

GO:0009733 "response to auxin stimulus" evidence=RCA;TAS

GO:0005515 "protein binding" evidence=IPI

GO:0009741 "response to brassinosteroid stimulus" evidence=RCA

GO:0010583 "response to cyclopentenone" evidence=RCA

GO:0048527 "lateral root development" evidence=RCA

TAIR|locus:2094598 IAA7 "indole-3-acetic acid 7" [Arabidopsis thaliana (taxid:3702)]

 Score = 499 (180.7 bits), Expect = 1.5e-55, Sum P(3) = 1.5e-55
 Identities = 100/164 (60%), Positives = 125/164 (76%)

Query:   212 QVVGWPPIRSFRKNSLA---TSSKNNDEVDGKAGS------SALFVKVSMDGAPYLRKVD 262
             QVVGWPP+R++RKN +    TSS   +    KAG+       A  VKVSMDGAPYLRKVD
Sbjct:    82 QVVGWPPVRNYRKNMMTQQKTSSGAEEASSEKAGNFGGGAAGAGLVKVSMDGAPYLRKVD 141

Query:   263 LKNYSKYQELSSALEKMFSCFTIGQYGSHGALGREMLSESKLKDLLHGSEFVLTYEDKDG 322
             LK Y  YQ+LS AL KMFS FT+G YG+ G +  + ++ESKL +LL+ SE+V +YEDKDG
Sbjct:   142 LKMYKSYQDLSDALAKMFSSFTMGNYGAQGMI--DFMNESKLMNLLNSSEYVPSYEDKDG 199

Query:   323 DWMLVGDVPWEMFIGTCKRLRIMKSTDAIGLAPRAVEK-CRNRN 365
             DWMLVGDVPWEMF+ +CKRLRIMK ++A+GLAPRA+EK C+NR+
Sbjct:   200 DWMLVGDVPWEMFVESCKRLRIMKGSEAVGLAPRAMEKYCKNRS 243

GO:0005634 "nucleus" evidence=ISM;IDA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

GO:0046983 "protein dimerization activity" evidence=IEA

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

GO:0005515 "protein binding" evidence=IPI

GO:0009733 "response to auxin stimulus" evidence=TAS

GO:0009611 "response to wounding" evidence=IEP

GO:0009753 "response to jasmonic acid stimulus" evidence=IEP

GO:0009630 "gravitropism" evidence=IMP

GO:0000271 "polysaccharide biosynthetic process" evidence=RCA

GO:0007389 "pattern specification process" evidence=RCA

GO:0008361 "regulation of cell size" evidence=RCA

GO:0009269 "response to desiccation" evidence=RCA

GO:0009409 "response to cold" evidence=RCA

GO:0009651 "response to salt stress" evidence=RCA

GO:0009737 "response to abscisic acid stimulus" evidence=RCA

GO:0009825 "multidimensional cell growth" evidence=RCA

GO:0009926 "auxin polar transport" evidence=RCA

GO:0009932 "cell tip growth" evidence=RCA

GO:0010015 "root morphogenesis" evidence=RCA

GO:0010817 "regulation of hormone levels" evidence=RCA

GO:0040007 "growth" evidence=RCA

GO:0043481 "anthocyanin accumulation in tissues in response to UV light" evidence=RCA

GO:0048767 "root hair elongation" evidence=RCA

GO:0071555 "cell wall organization" evidence=RCA

GO:0009414 "response to water deprivation" evidence=IMP

UNIPROTKB|Q5Z749 IAA21 "Auxin-responsive protein IAA21" [Oryza sativa Japonica Group (taxid:39947)]

 Score = 532 (192.3 bits), Expect = 1.6e-55, Sum P(2) = 1.6e-55
 Identities = 113/218 (51%), Positives = 136/218 (62%)

Query:   153 PNLGLKSGSIQENLGPQTAKGKEMANQKAVQERPHVNNETITNHNGXXXXXXXXXXXXXQ 212
             P  G K G     +G    + +E A  KA         E                    Q
Sbjct:    56 PKGGAKRGFADAIVGGPAGQRREAAGGKAAAAAAEAEEEE-------EKKKAQAPAAKAQ 108

Query:   213 VVGWPPIRSFRKNSLATSS---KNNDEVDGKAG--SSALFVKVSMDGAPYLRKVDLKNYS 267
             VVGWPPIRS+RKN++A S    K  D+ + K    S  L+VKVSMDGAPYLRKVDLK Y 
Sbjct:   109 VVGWPPIRSYRKNTMAMSQPALKGKDDGEAKQAPASGCLYVKVSMDGAPYLRKVDLKMYK 168

Query:   268 KYQELSSALEKMFSCFTIGQYGSHGALGREMLSESKLKDLLHGSEFVLTYEDKDGDWMLV 327
              Y+ELS ALEKMFSCFT+G   S+G  GR+ LS+ +L DL +G+E VLTYEDKD DWMLV
Sbjct:   169 NYKELSLALEKMFSCFTVGHGESNGKSGRDGLSDCRLMDLKNGTELVLTYEDKDEDWMLV 228

Query:   328 GDVPWEMFIGTCKRLRIMKSTDAIGLAPRAVEKCRNRN 365
             GDVPW MF  +C+RLRIMK +DA+GLAPRA +K +NRN
Sbjct:   229 GDVPWRMFTDSCRRLRIMKGSDAVGLAPRATDKSKNRN 266

GO:0009733 "response to auxin stimulus" evidence=IC

UNIPROTKB|Q75GB1 IAA17 "Auxin-responsive protein IAA17" [Oryza sativa Japonica Group (taxid:39947)]

 Score = 485 (175.8 bits), Expect = 2.4e-55, Sum P(3) = 2.4e-55
 Identities = 99/156 (63%), Positives = 119/156 (76%)

Query:   212 QVVGWPPIRSFRKNSLATSS--KNNDEVDGKAGSSALFVKVSMDGAPYLRKVDLKNYSKY 269
             QVVGWPPIRS+RKN++AT+    + ++ + K G   L+VKVSMDGAPYLRKVDLK Y  Y
Sbjct:   116 QVVGWPPIRSYRKNTMATNQLKSSKEDAEAKQGQGFLYVKVSMDGAPYLRKVDLKTYKNY 175

Query:   270 QELSSALEKMFSCFTIGQYGSHGALGREMLSESKLKDLLHGSEFVLTYEDKDGDWMLVGD 329
             ++LS+ALEKMF  FT G+ G         LSES+ KD     E+VLTYEDKDGDWMLVGD
Sbjct:   176 KDLSTALEKMFIGFTTGKDG---------LSESR-KD----GEYVLTYEDKDGDWMLVGD 221

Query:   330 VPWEMFIGTCKRLRIMKSTDAIGLAPRAVEKCRNRN 365
             VPWEMF  +C+RLRIMK +DAIGLAPRAV+K +NRN
Sbjct:   222 VPWEMFANSCRRLRIMKGSDAIGLAPRAVDKSKNRN 257

GO:0009733 "response to auxin stimulus" evidence=ISS

TAIR|locus:2084933 IAA16 "indoleacetic acid-induced protein 16" [Arabidopsis thaliana (taxid:3702)]

 Score = 525 (189.9 bits), Expect = 6.9e-55, Sum P(2) = 6.9e-55
 Identities = 104/169 (61%), Positives = 131/169 (77%)

Query:   212 QVVGWPPIRSFRKNSLA-------TSSKNNDEVDGKAG--SSA------LFVKVSMDGAP 256
             QVVGWPP+RSFRKN ++        +++ ND+  G +G  SSA       +VKVSMDGAP
Sbjct:    70 QVVGWPPVRSFRKNVMSGQKPTTGDATEGNDKTSGSSGATSSASACATVAYVKVSMDGAP 129

Query:   257 YLRKVDLKNYSKYQELSSALEKMFSCFTIGQYGSHGALGREMLSESKLKDLLHGSEFVLT 316
             YLRK+DLK Y  YQ+LS+AL KMFS FTIG YG  G   ++ ++ESKL DLL+GS++V T
Sbjct:   130 YLRKIDLKLYKTYQDLSNALSKMFSSFTIGNYGPQGM--KDFMNESKLIDLLNGSDYVPT 187

Query:   317 YEDKDGDWMLVGDVPWEMFIGTCKRLRIMKSTDAIGLAPRAVEKCRNRN 365
             YEDKDGDWMLVGDVPWEMF+ +CKR+RIMK ++AIGLAPRA+EKC+NR+
Sbjct:   188 YEDKDGDWMLVGDVPWEMFVDSCKRIRIMKGSEAIGLAPRALEKCKNRS 236

GO:0005634 "nucleus" evidence=ISM;IEA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

GO:0046983 "protein dimerization activity" evidence=IEA

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

GO:0009733 "response to auxin stimulus" evidence=RCA;TAS

GO:0005515 "protein binding" evidence=IPI

GO:0006970 "response to osmotic stress" evidence=RCA

GO:0010583 "response to cyclopentenone" evidence=RCA

GO:0046686 "response to cadmium ion" evidence=RCA

UNIPROTKB|Q5NB25 IAA3 "Auxin-responsive protein IAA3" [Oryza sativa Japonica Group (taxid:39947)]

 Score = 468 (169.8 bits), Expect = 3.3e-51, Sum P(2) = 3.3e-51
 Identities = 96/156 (61%), Positives = 116/156 (74%)

Query:   212 QVVGWPPIRSFRKNSLATSS--KNNDEVDGKAGSSALFVKVSMDGAPYLRKVDLKNYSKY 269
             QVVGWPPIRS+RKN++AT+    N ++VD K G   L+VKVSMDGAPYLRKVDLK Y  Y
Sbjct:   123 QVVGWPPIRSYRKNTMATNQIKSNKEDVDAKQGQGFLYVKVSMDGAPYLRKVDLKTYKNY 182

Query:   270 QELSSALEKMFSCFTIGQYGSHGALGREMLSESKLKDLLHGSEFVLTYEDKDGDWMLVGD 329
             +++S  LEKMF  F+ G+ G+          E++ KD     E+VLTYEDKDGDWMLVGD
Sbjct:   183 KDMSLGLEKMFIGFSTGKEGA----------ENQ-KD----GEYVLTYEDKDGDWMLVGD 227

Query:   330 VPWEMFIGTCKRLRIMKSTDAIGLAPRAVEKCRNRN 365
             VPWEMF  +C+RLRIMK +DAIGLAPRA EK +NRN
Sbjct:   228 VPWEMFTDSCRRLRIMKGSDAIGLAPRAGEKSKNRN 263

GO:0009733 "response to auxin stimulus" evidence=IC

UNIPROTKB|Q6AT33 IAA19 "Auxin-responsive protein IAA19" [Oryza sativa Japonica Group (taxid:39947)]

 Score = 488 (176.8 bits), Expect = 9.8e-50, Sum P(2) = 9.8e-50
 Identities = 102/225 (45%), Positives = 136/225 (60%)

Query:   137 EGKYLSSSELLSPRAAPNLGLKSGSIQENLGPQTAKGKEMANQKAVQERPHVNNETITNH 196
             E   + ++  L P   P  G K G + ++L    ++G+  A      ER  V  E     
Sbjct:    56 EAVVVDAALTLGPAPPPRGGAKRGFV-DSL--DRSEGRRAAATAGDDERG-VREEEEEEK 111

Query:   197 NGXXXXXXXXXXXXXQVVGWPPIRSFRKNSLATSS-KNNDEVDGKAGSSALFVKVSMDGA 255
                            QVVGWPP+RS+RKN+LA S+ K   E  GK+     +VKVSMDGA
Sbjct:   112 GLGEAAAGAPRAAKAQVVGWPPVRSYRKNTLAASATKTKGEDQGKSEVGCCYVKVSMDGA 171

Query:   256 PYLRKVDLKNYSKYQELSSALEKMFSCFTIGQYGSHGALGREMLSESKLKDLLHGSEFVL 315
             PYLRKVDLK YS Y++LS ALEKMFSCF  G+  SH    R+ L++    D L   E+VL
Sbjct:   172 PYLRKVDLKTYSSYEDLSLALEKMFSCFITGRSSSHKTSKRDRLTDGSRADALKDQEYVL 231

Query:   316 TYEDKDGDWMLVGDVPWEMFIGTCKRLRIMKSTDAIGLAPRAVEK 360
             TYEDKD DWMLVGD+PW++F  +C++LRIM+ +DA G+APR++E+
Sbjct:   232 TYEDKDADWMLVGDLPWDLFTTSCRKLRIMRGSDAAGMAPRSLEQ 276

GO:0009733 "response to auxin stimulus" evidence=IC

TAIR|locus:2018374 AXR3 "AT1G04250" [Arabidopsis thaliana (taxid:3702)]

 Score = 478 (173.3 bits), Expect = 1.6e-49, Sum P(2) = 1.6e-49
 Identities = 89/153 (58%), Positives = 118/153 (77%)

Query:   212 QVVGWPPIRSFRKNSLATSSKNNDEVDGKAGSSALFVKVSMDGAPYLRKVDLKNYSKYQE 271
             QVVGWPP+RS+RKN + +  K++   +     +A FVKVSMDGAPYLRK+DL+ Y  Y E
Sbjct:    82 QVVGWPPVRSYRKNVMVSCQKSSGGPE-----AAAFVKVSMDGAPYLRKIDLRMYKSYDE 136

Query:   272 LSSALEKMFSCFTIGQYGSHGALGREMLSESKLKDLLHGSEFVLTYEDKDGDWMLVGDVP 331
             LS+AL  MFS FT+G++G    +  + ++E KL DL++  ++V +YEDKDGDWMLVGDVP
Sbjct:   137 LSNALSNMFSSFTMGKHGGEEGM-IDFMNERKLMDLVNSWDYVPSYEDKDGDWMLVGDVP 195

Query:   332 WEMFIGTCKRLRIMKSTDAIGLAPRAVEKCRNR 364
             W MF+ TCKRLR+MK +DAIGLAPRA+EKC++R
Sbjct:   196 WPMFVDTCKRLRLMKGSDAIGLAPRAMEKCKSR 228

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS;NAS

GO:0005634 "nucleus" evidence=ISM;IDA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

GO:0046983 "protein dimerization activity" evidence=IEA

GO:0009734 "auxin mediated signaling pathway" evidence=TAS

GO:0005515 "protein binding" evidence=IPI

GO:0009733 "response to auxin stimulus" evidence=IEP;IMP;TAS

GO:0042802 "identical protein binding" evidence=IPI

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q38827	IAA9_ARATH	No assigned EC number	0.5843	0.8328	0.8994	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	365
pfam02309	188	pfam02309, AUX_IAA, AUX/IAA family	1e-88

>gnl|CDD|216968 pfam02309, AUX_IAA, AUX/IAA family

 Score =  264 bits (677), Expect = 1e-88
 Identities = 125/291 (42%), Positives = 142/291 (48%), Gaps = 103/291 (35%)

Query: 67  LNLKATELRLGLPGSQSPERGSELCLLGPAQLDEKPLFPLHPTSDSHYPSQKNVVSGNKR 126
           LNLKATELRLGLPG   PE                                 + V+ NKR
Sbjct: 1   LNLKATELRLGLPGGSEPE----------------------------SEPSTSSVTSNKR 32

Query: 127 GFSDAMDGFLEGKYLSSSELLSPRAAPNLGLKSGSIQENLGPQTAKGKEMANQKAVQERP 186
           GFS+                                                        
Sbjct: 33  GFSE------------------------------------------------VTEDGISS 44

Query: 187 HVNNETITNHNGSASNSSSAPAAKAQVVGWPPIRSFRKNSLATSSKNNDEVDGKAGSSAL 246
            +  +  T    S  +S+  PA KAQVVGWPP+RS+RKNSL                S  
Sbjct: 45  SLGEDKSTISVSSNGDSAKPPA-KAQVVGWPPVRSYRKNSLR------------EKKSGS 91

Query: 247 FVKVSMDGAPYLRKVDLKNYSKYQELSSALEKMFSCFTIGQYGSHGALGREMLSESKLKD 306
           +VKVSMDGAPYLRKVDLK Y  Y ELSSALEKMFSCFTIG              ES L D
Sbjct: 92  YVKVSMDGAPYLRKVDLKMYKSYDELSSALEKMFSCFTIG--------------ESGLLD 137

Query: 307 LLHGSEFVLTYEDKDGDWMLVGDVPWEMFIGTCKRLRIMKSTDAIGLAPRA 357
           LL+GSE+V TYEDKDGDWMLVGDVPWEMF+ +CKRLRIMK ++AIGLAPR+
Sbjct: 138 LLNGSEYVPTYEDKDGDWMLVGDVPWEMFVESCKRLRIMKGSEAIGLAPRS 188

Transcription of the AUX/IAA family of genes is rapidly induced by the plant hormone auxin. Some members of this family are longer and contain an N terminal DNA binding domain. The function of this region is uncertain. Length = 188

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	365
PF02309	215	AUX_IAA: AUX/IAA family; InterPro: IPR003311 The A	100.0
PF00564	84	PB1: PB1 domain; InterPro: IPR000270 The Phox and	97.41
smart00666	81	PB1 PB1 domain. Phox and Bem1p domain, present in	97.13
cd06398	91	PB1_Joka2 The PB1 domain is present in the Nicotia	96.86
cd05992	81	PB1 The PB1 domain is a modular domain mediating s	96.77
cd06407	82	PB1_NLP A PB1 domain is present in NIN like protei	96.76
cd06396	81	PB1_NBR1 The PB1 domain is an essential part of NB	96.23
cd06401	81	PB1_TFG The PB1 domain found in TFG protein, an on	96.0
cd06404	83	PB1_aPKC PB1 domain is an essential modular domain	94.98
cd06409	86	PB1_MUG70 The MUG70 protein is a product of the me	94.95
cd06402	87	PB1_p62 The PB1 domain is an essential part of p62	94.94
cd06403	80	PB1_Par6 The PB1 domain is an essential part of Pa	94.64
cd06397	82	PB1_UP1 Uncharacterized protein 1. The PB1 domain	92.92
cd06408	86	PB1_NoxR The PB1 domain is present in the Epichloe	90.53

>PF02309 AUX_IAA: AUX/IAA family; InterPro: IPR003311 The Aux/IAA family of genes are key regulators of auxin-modified gene expression []

Probab=100.00  E-value=3.6e-69  Score=492.64  Aligned_cols=215  Identities=63%  Similarity=0.973  Sum_probs=6.0

Q ss_pred             CCccccccccCCCCCCCcccCccccccCCCcCCCCCCCCCCCCCCCCCCCccccccCCCcchhhhccccccccccccccc
Q 017828           67 LNLKATELRLGLPGSQSPERGSELCLLGPAQLDEKPLFPLHPTSDSHYPSQKNVVSGNKRGFSDAMDGFLEGKYLSSSEL  146 (365)
Q Consensus        67 lnlk~TELRLGLPGs~sper~~~~~~~~~~~~~~~~~fpl~p~~~~~~~~~~~~~sg~KRGFsdai~~~~egK~~~~s~~  146 (365)
                      ||||+|||||||||+++|+...                         ...++...+++||||+++|+......+...   
T Consensus         1 ln~~~TELrLGLPG~~~~~~~~-------------------------~~~~~~~~~~~kR~F~~aid~~~~~~~~~~---   52 (215)
T PF02309_consen    1 LNLKATELRLGLPGSESPDASS-------------------------SSSSKKSSSGNKRGFSEAIDSSSSNSQSSS---   52 (215)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             CCchhhhhcccCCCCCCCCccc-------------------------ccccccccCcccccchhhhhhccccccccc---
Confidence            7999999999999999987211                         012345578999999999986551111000   


Q ss_pred             cCCCCCCCCCCCCCCccccCCCccccccccccccccccCCCCCCCCccCCCCCCCCCCCCCcccCcccCCCCcccccccc
Q 017828          147 LSPRAAPNLGLKSGSIQENLGPQTAKGKEMANQKAVQERPHVNNETITNHNGSASNSSSAPAAKAQVVGWPPIRSFRKNS  226 (365)
Q Consensus       147 ~~~~~~~~~~l~~g~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~p~~kaqVVGWPPIrS~RKN~  226 (365)
                        ....               . .   ..    .. .+...       ......+.....|++++|+||||||++||+|.
T Consensus        53 --~~~~---------------~-~---~~----~~-~~~~~-------~~~~~~~~~~~~p~~~~~~vgwpp~~s~r~n~   99 (215)
T PF02309_consen   53 --SSSS---------------D-S---SS----SS-SSSST-------SSSSSDSSSSSPPASKAQVVGWPPVRSFRKNS   99 (215)
T ss_dssp             ------------------------------------------------------------------BTTBS----S----
T ss_pred             --cccc---------------c-c---Cc----cc-ccccc-------cccccccccCCCCcccccccCCCccccccccc
Confidence              0000               0 0   00    00 00000       00011112234577889999999999999998


Q ss_pred             cccccCCCccccCCCCCCcceEEEeecCCcccceecCCCCCChHHHHHHHHHhhccccccccCCCCCcchhhhhhhhhcc
Q 017828          227 LATSSKNNDEVDGKAGSSALFVKVSMDGAPYLRKVDLKNYSKYQELSSALEKMFSCFTIGQYGSHGALGREMLSESKLKD  306 (365)
Q Consensus       227 la~~sk~~~e~~~~~~~~~~yVKV~MDG~pIGRKVDL~~y~sY~eLs~aLe~MF~~f~~gq~g~~g~~g~e~~~e~kL~d  306 (365)
                      +..         .+....++||||+|||+||||||||++|+||++|+.+|++||.+|.|++|++++      .++..+.+
T Consensus       100 ~~~---------~~~~~~~~~vKV~mdG~~igRkVDL~~~~sY~~L~~~L~~MF~~~~i~~~~~~~------~~~~~~~~  164 (215)
T PF02309_consen  100 LSE---------KQSSSSRSYVKVNMDGVPIGRKVDLSAYSSYEELSSALEKMFSCFSIEQCGSHG------LNESGLLD  164 (215)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             ccc---------cccccCCceeEEEecCcccceecCHHHhhCHHHHHHHHHHhcCCCCcccccccc------ccchhhcc
Confidence            762         112234799999999999999999999999999999999999999999998743      45566778


Q ss_pred             ccCCCceEEEEEcCCCCeEEccCcChHHHhhhcceeEEecCccccCcchhh
Q 017828          307 LLHGSEFVLTYEDKDGDWMLVGDVPWEMFIGTCKRLRIMKSTDAIGLAPRA  357 (365)
Q Consensus       307 ll~gseyvLtYEDkEGDwMLVGDVPWemFv~svKRLrImk~Seaiglapr~  357 (365)
                      ++++++|+|||||+||||||||||||+|||.+|||||||+.+|++||+|||
T Consensus       165 ~~~~~~~~l~Y~D~egd~mlvGD~PW~~F~~~vkRl~I~~~~e~~~~~~r~  215 (215)
T PF02309_consen  165 LLNGSEYVLVYEDKEGDWMLVGDVPWEEFVKSVKRLRIMKSSEAKGLAPRA  215 (215)
T ss_dssp             ---------------------------------------------------
T ss_pred             ccCCcceeEEEECCCCCEEEecCCCHHHHHHHhhccEEecHHHhcccCCCC
Confidence            888899999999999999999999999999999999999999999999997

The plant hormone auxin (indole-3-acetic acid, IAA) regulates diverse cellular and developmental responses in plants, including cell division, expansion, differentiation and patterning of embryo responses []. Auxin can regulate the gene expression of several families, including GH3 and SAUR, as well as Aux/IAA itself. The Aux/IAA proteins act as repressors of auxin-induced gene expression, possibly through modulating the activity of DNA-binding auxin response factors (ARFs) (IPR010525 from INTERPRO). Aux/IAA and ARF are thought to interact through C-terminal protein-protein interaction domains found in both Aux/IAA and ARF. Recent evidence suggests that Aux/IAA proteins can also mediate light responses []. Some members of the AUX/IAA family are longer and contain an N-terminal DNA binding domain [] and may have an early function in the establishment of vascular and body patterns in embryonic and post-embryonic development in some plants.; GO: 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus; PDB: 2P1N_F 2P1Q_C 2P1O_C.

>PF00564 PB1: PB1 domain; InterPro: IPR000270 The Phox and Bem1p domain, is present in many eukaryotic cytoplasmic signalling proteins

Probab=97.41  E-value=0.00036  Score=54.20  Aligned_cols=68  Identities=26%  Similarity=0.444  Sum_probs=55.2

Q ss_pred             eEEEeecCCcccceecCCCCCChHHHHHHHHHhhccccccccCCCCCcchhhhhhhhhccccCCCceEEEEEcCCCCeEE
Q 017828          247 FVKVSMDGAPYLRKVDLKNYSKYQELSSALEKMFSCFTIGQYGSHGALGREMLSESKLKDLLHGSEFVLTYEDKDGDWML  326 (365)
Q Consensus       247 yVKV~MDG~pIGRKVDL~~y~sY~eLs~aLe~MF~~f~~gq~g~~g~~g~e~~~e~kL~dll~gseyvLtYEDkEGDwML  326 (365)
                      -|||+..|. +=|.+.+..--+|.+|...+++.|...                          ...+.|.|.|.||||..
T Consensus         3 ~vK~~~~~~-~~~~~~~~~~~s~~~L~~~i~~~~~~~--------------------------~~~~~l~Y~D~dgD~V~   55 (84)
T PF00564_consen    3 RVKVRYGGD-IRRIISLPSDVSFDDLRSKIREKFGLL--------------------------DEDFQLKYKDEDGDLVT   55 (84)
T ss_dssp             EEEEEETTE-EEEEEEECSTSHHHHHHHHHHHHHTTS--------------------------TSSEEEEEEETTSSEEE
T ss_pred             EEEEEECCe-eEEEEEcCCCCCHHHHHHHHHHHhCCC--------------------------CccEEEEeeCCCCCEEE
Confidence            589999997 333588888889999999999999741                          24799999999999998


Q ss_pred             ccC-cChHHHhhhcce
Q 017828          327 VGD-VPWEMFIGTCKR  341 (365)
Q Consensus       327 VGD-VPWemFv~svKR  341 (365)
                      +-+ .=|++.+..+++
T Consensus        56 i~sd~Dl~~a~~~~~~   71 (84)
T PF00564_consen   56 ISSDEDLQEAIEQAKE   71 (84)
T ss_dssp             ESSHHHHHHHHHHHHH
T ss_pred             eCCHHHHHHHHHHHHh
Confidence            875 568888888753

The domain adopts a beta-grasp fold, similar to that found in ubiquitin and Ras-binding domains. A motif, variously termed OPR, PC and AID, represents the most conserved region of the majority of PB1 domains, and is necessary for PB1 domain function. This function is the formation of PB1 domain heterodimers, although not all PB1 domain pairs associate.; GO: 0005515 protein binding; PDB: 1IPG_A 1IP9_A 2KFK_A 1WMH_A 1VD2_A 1WI0_A 1OEY_C 1PQS_A 1Q1O_A 1TZ1_A ....

>smart00666 PB1 PB1 domain

Probab=97.13  E-value=0.0023  Score=49.74  Aligned_cols=66  Identities=26%  Similarity=0.419  Sum_probs=52.5

Q ss_pred             eEEEeecCCcccceecCCCCCChHHHHHHHHHhhccccccccCCCCCcchhhhhhhhhccccCCCceEEEEEcCCCCeEE
Q 017828          247 FVKVSMDGAPYLRKVDLKNYSKYQELSSALEKMFSCFTIGQYGSHGALGREMLSESKLKDLLHGSEFVLTYEDKDGDWML  326 (365)
Q Consensus       247 yVKV~MDG~pIGRKVDL~~y~sY~eLs~aLe~MF~~f~~gq~g~~g~~g~e~~~e~kL~dll~gseyvLtYEDkEGDwML  326 (365)
                      =|||.-.|.  -|.+-+..--+|.+|...+.+.|..                          ....+.|.|+|.||||..
T Consensus         3 ~vK~~~~~~--~~~~~~~~~~s~~dL~~~i~~~~~~--------------------------~~~~~~l~Y~Dedgd~v~   54 (81)
T smart00666        3 DVKLRYGGE--TRRLSVPRDISFEDLRSKVAKRFGL--------------------------DNQSFTLKYQDEDGDLVS   54 (81)
T ss_pred             cEEEEECCE--EEEEEECCCCCHHHHHHHHHHHhCC--------------------------CCCCeEEEEECCCCCEEE
Confidence            378887554  6777888889999999999999974                          113689999999999987


Q ss_pred             ccC-cChHHHhhhcc
Q 017828          327 VGD-VPWEMFIGTCK  340 (365)
Q Consensus       327 VGD-VPWemFv~svK  340 (365)
                      +.+ .=|.+.+..++
T Consensus        55 l~sd~Dl~~a~~~~~   69 (81)
T smart00666       55 LTSDEDLEEAIEEYD   69 (81)
T ss_pred             ecCHHHHHHHHHHHH
Confidence            665 57887777766

Phox and Bem1p domain, present in many eukaryotic cytoplasmic signalling proteins. The domain adopts a beta-grasp fold, similar to that found in ubiquitin and Ras-binding domains. A motif, variously termed OPR, PC and AID, represents the most conserved region of the majority of PB1 domains, and is necessary for PB1 domain function. This function is the formation of PB1 domain heterodimers, although not all PB1 domain pairs associate.

>cd06398 PB1_Joka2 The PB1 domain is present in the Nicotiana plumbaginifolia Joka2 protein which interacts with sulfur stress inducible UP9 protein

Probab=96.86  E-value=0.0034  Score=52.09  Aligned_cols=68  Identities=24%  Similarity=0.279  Sum_probs=51.4

Q ss_pred             eEEEeecCCcccceecCC---CCCChHHHHHHHHHhhccccccccCCCCCcchhhhhhhhhccccCCCceEEEEEcCCCC
Q 017828          247 FVKVSMDGAPYLRKVDLK---NYSKYQELSSALEKMFSCFTIGQYGSHGALGREMLSESKLKDLLHGSEFVLTYEDKDGD  323 (365)
Q Consensus       247 yVKV~MDG~pIGRKVDL~---~y~sY~eLs~aLe~MF~~f~~gq~g~~g~~g~e~~~e~kL~dll~gseyvLtYEDkEGD  323 (365)
                      -|||.-+|.-+=-++++.   ..-+|++|...+.+.|..                         ....+|+|.|.|.|||
T Consensus         2 ~vKv~y~~~~rRf~l~~~~~~~d~~~~~L~~kI~~~f~l-------------------------~~~~~~~l~Y~Dedgd   56 (91)
T cd06398           2 VVKVKYGGTLRRFTFPVAENQLDLNMDGLREKVEELFSL-------------------------SPDADLSLTYTDEDGD   56 (91)
T ss_pred             EEEEEeCCEEEEEEeccccccCCCCHHHHHHHHHHHhCC-------------------------CCCCcEEEEEECCCCC
Confidence            489999998555555554   467999999999999974                         1125899999999999


Q ss_pred             eEEccCcChHHHhhhcce
Q 017828          324 WMLVGDVPWEMFIGTCKR  341 (365)
Q Consensus       324 wMLVGDVPWemFv~svKR  341 (365)
                      |..+-+.  +.|...+.+
T Consensus        57 ~V~l~~D--~DL~~a~~~   72 (91)
T cd06398          57 VVTLVDD--NDLTDAIQY   72 (91)
T ss_pred             EEEEccH--HHHHHHHHH
Confidence            9988765  455554443

The PB1 domain is a modular domain mediating specific protein-protein interactions which play a role in many critical cell processes, such as osteoclastogenesis, angiogenesis, early cardiovascular development and cell polarity. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domain, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domain depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic aminoacid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. Interactions of PB1 domains with other protein domains have been described as noncanonical PB1-interactions. The PB1 domain module

>cd05992 PB1 The PB1 domain is a modular domain mediating specific protein-protein interactions which play a role in many critical cell processes, such as osteoclastogenesis, angiogenesis, early cardiovascular development, and cell polarity

Probab=96.77  E-value=0.0071  Score=46.65  Aligned_cols=66  Identities=26%  Similarity=0.410  Sum_probs=52.0

Q ss_pred             eEEEeecCCcccceecCC-CCCChHHHHHHHHHhhccccccccCCCCCcchhhhhhhhhccccCCCceEEEEEcCCCCeE
Q 017828          247 FVKVSMDGAPYLRKVDLK-NYSKYQELSSALEKMFSCFTIGQYGSHGALGREMLSESKLKDLLHGSEFVLTYEDKDGDWM  325 (365)
Q Consensus       247 yVKV~MDG~pIGRKVDL~-~y~sY~eLs~aLe~MF~~f~~gq~g~~g~~g~e~~~e~kL~dll~gseyvLtYEDkEGDwM  325 (365)
                      -|||+-.|.  -|.+=+. .--+|++|...|.+.|...                          ...+.+.|.|.||||.
T Consensus         2 ~vK~~~~~~--~~~~~~~~~~~s~~~L~~~i~~~~~~~--------------------------~~~~~l~y~D~e~d~v   53 (81)
T cd05992           2 RVKVKYGGE--IRRFVVVSRSISFEDLRSKIAEKFGLD--------------------------AVSFKLKYPDEDGDLV   53 (81)
T ss_pred             cEEEEecCC--CEEEEEecCCCCHHHHHHHHHHHhCCC--------------------------CCcEEEEeeCCCCCEE
Confidence            378888875  4444445 8889999999999999741                          0368999999999999


Q ss_pred             EccC-cChHHHhhhcc
Q 017828          326 LVGD-VPWEMFIGTCK  340 (365)
Q Consensus       326 LVGD-VPWemFv~svK  340 (365)
                      .+.+ .=|++.++.++
T Consensus        54 ~l~sd~Dl~~a~~~~~   69 (81)
T cd05992          54 TISSDEDLEEAIEEAR   69 (81)
T ss_pred             EeCCHHHHHHHHHHHh
Confidence            8887 67887777766

A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domain, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domain depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic aminoacid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. Interactions of PB1 domains with other protein domains have been described as a noncanonical PB1-interactions. The PB1 domain module is conserved in amoebas, fungi, animals, and plants.

>cd06407 PB1_NLP A PB1 domain is present in NIN like proteins (NLP), a key enzyme in a process of establishment of symbiosis betweeen legumes and nitrogen fixing bacteria (Rhizobium)

Probab=96.76  E-value=0.0049  Score=50.11  Aligned_cols=55  Identities=27%  Similarity=0.373  Sum_probs=44.0

Q ss_pred             eEEEeecCCcccceecCCCCCChHHHHHHHHHhhccccccccCCCCCcchhhhhhhhhccccCCCceEEEEEcCCCCeEE
Q 017828          247 FVKVSMDGAPYLRKVDLKNYSKYQELSSALEKMFSCFTIGQYGSHGALGREMLSESKLKDLLHGSEFVLTYEDKDGDWML  326 (365)
Q Consensus       247 yVKV~MDG~pIGRKVDL~~y~sY~eLs~aLe~MF~~f~~gq~g~~g~~g~e~~~e~kL~dll~gseyvLtYEDkEGDwML  326 (365)
                      -|||...|.  -+.+-|..--+|++|...+.++|..-                         +.+.|.|-|.|.||||.+
T Consensus         2 ~vK~~~~~d--~~r~~l~~~~~~~~L~~~i~~r~~~~-------------------------~~~~f~LkY~Ddegd~v~   54 (82)
T cd06407           2 RVKATYGEE--KIRFRLPPSWGFTELKQEIAKRFKLD-------------------------DMSAFDLKYLDDDEEWVL   54 (82)
T ss_pred             EEEEEeCCe--EEEEEcCCCCCHHHHHHHHHHHhCCC-------------------------CCCeeEEEEECCCCCeEE
Confidence            489999997  45566666669999999999999740                         125799999999999997


Q ss_pred             cc
Q 017828          327 VG  328 (365)
Q Consensus       327 VG  328 (365)
                      +-
T Consensus        55 lt   56 (82)
T cd06407          55 LT   56 (82)
T ss_pred             ee
Confidence            64

The PB1 domain is a modular domain mediating specific protein-protein interaction which play a role in many critical cell processes like osteoclastogenesis, angiogenesis, early cardiovascular development, and cell polarity. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domains, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domain depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic aminoacid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. Interactions of PB1 domains with other protein domains have been described as noncanonical PB1-inte

>cd06396 PB1_NBR1 The PB1 domain is an essential part of NBR1 protein, next to BRCA1, a scaffold protein mediating specific protein-protein interaction with both titin protein kinase and with another scaffold protein p62

Probab=96.23  E-value=0.014  Score=48.07  Aligned_cols=54  Identities=15%  Similarity=0.267  Sum_probs=46.1

Q ss_pred             eEEEeecCCcccceecCCCCCChHHHHHHHHHhhccccccccCCCCCcchhhhhhhhhccccCCCceEEEEEcCCCCeEE
Q 017828          247 FVKVSMDGAPYLRKVDLKNYSKYQELSSALEKMFSCFTIGQYGSHGALGREMLSESKLKDLLHGSEFVLTYEDKDGDWML  326 (365)
Q Consensus       247 yVKV~MDG~pIGRKVDL~~y~sY~eLs~aLe~MF~~f~~gq~g~~g~~g~e~~~e~kL~dll~gseyvLtYEDkEGDwML  326 (365)
                      -|||.-.|.-+--+++-+..-+|++|...+.++|..                          +  .+.|.|-|.||||.+
T Consensus         2 ~vKaty~~d~~rf~~~~~~~~~~~~L~~ev~~rf~l--------------------------~--~f~lKYlDde~e~v~   53 (81)
T cd06396           2 NLKVTYNGESQSFLVSDSENTTWASVEAMVKVSFGL--------------------------N--DIQIKYVDEENEEVS   53 (81)
T ss_pred             EEEEEECCeEEEEEecCCCCCCHHHHHHHHHHHhCC--------------------------C--cceeEEEcCCCCEEE
Confidence            389999999777778777788999999999999974                          1  478999999999988


Q ss_pred             cc
Q 017828          327 VG  328 (365)
Q Consensus       327 VG  328 (365)
                      +-
T Consensus        54 ls   55 (81)
T cd06396          54 VN   55 (81)
T ss_pred             EE
Confidence            74

A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domain, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domain depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic aminoacid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. The NBR1 protein contains a type I PB1 domain.

>cd06401 PB1_TFG The PB1 domain found in TFG protein, an oncogenic gene product and fusion partner to nerve growth factor tyrosine kinase receptor TrkA and to the tyrosine kinase ALK

Probab=96.00  E-value=0.036  Score=45.76  Aligned_cols=74  Identities=20%  Similarity=0.451  Sum_probs=50.4

Q ss_pred             eEEEeecCCcccceecCCCCC-ChHHHHHHHHHhhccccccccCCCCCcchhhhhhhhhccccCCCceEEEEEcCCCCeE
Q 017828          247 FVKVSMDGAPYLRKVDLKNYS-KYQELSSALEKMFSCFTIGQYGSHGALGREMLSESKLKDLLHGSEFVLTYEDKDGDWM  325 (365)
Q Consensus       247 yVKV~MDG~pIGRKVDL~~y~-sY~eLs~aLe~MF~~f~~gq~g~~g~~g~e~~~e~kL~dll~gseyvLtYEDkEGDwM  325 (365)
                      -+|+.-.|.  -|.+=+..-. +|.+|...+.+.|...                       +.....+.+.|.|.|||+.
T Consensus         2 iiK~~~g~D--iR~~~~~~~~~t~~~L~~~v~~~F~~~-----------------------~~~~~~flIKYkD~dGDlV   56 (81)
T cd06401           2 ILKAQLGDD--IRRIPIHNEDITYDELLLMMQRVFRGK-----------------------LGSSDDVLIKYKDEDGDLI   56 (81)
T ss_pred             eEEEEeCCe--EEEEeccCccccHHHHHHHHHHHhccc-----------------------cCCcccEEEEEECCCCCEE
Confidence            367777666  4665444433 9999999999999741                       0112479999999999999


Q ss_pred             EccCc---ChHHHhhhcceeEEe
Q 017828          326 LVGDV---PWEMFIGTCKRLRIM  345 (365)
Q Consensus       326 LVGDV---PWemFv~svKRLrIm  345 (365)
                      -+.+-   -|-.=+...+||+|.
T Consensus        57 TIts~~dL~~A~~~~~~~~l~~~   79 (81)
T cd06401          57 TIFDSSDLSFAIQCSRILKLTLF   79 (81)
T ss_pred             EeccHHHHHHHHhcCcceEEEEe
Confidence            99874   344334444555553

The PB1 domain is a modular domain mediating specific protein-protein interaction in many critical cell processes, such as osteoclastogenesis, angiogenesis, early cardiovascular development and cell polarity. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domains, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domain depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic aminoacid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. The PB1 domains of TFG represent a type I/II PB1 domain. The physiological function of TFG remains unknown.

>cd06404 PB1_aPKC PB1 domain is an essential modular domain of the atypical protein kinase C (aPKC) which in complex with Par6 and Par3 proteins is crucial for establishment of apical-basal polarity of animal cells

Probab=94.98  E-value=0.065  Score=44.49  Aligned_cols=56  Identities=21%  Similarity=0.350  Sum_probs=44.7

Q ss_pred             eEEEeecCCcccceecCCCCCChHHHHHHHHHhhccccccccCCCCCcchhhhhhhhhccccCCCceEEEEEcCCCCeEE
Q 017828          247 FVKVSMDGAPYLRKVDLKNYSKYQELSSALEKMFSCFTIGQYGSHGALGREMLSESKLKDLLHGSEFVLTYEDKDGDWML  326 (365)
Q Consensus       247 yVKV~MDG~pIGRKVDL~~y~sY~eLs~aLe~MF~~f~~gq~g~~g~~g~e~~~e~kL~dll~gseyvLtYEDkEGDwML  326 (365)
                      -||++-.|.-.--.+|.  .-+|++|.+.+..||..                         ..+..|++.|.|.|||---
T Consensus         2 ~~K~~y~gdi~it~~d~--~~s~e~L~~~v~~~c~~-------------------------~~~q~ft~kw~DEEGDp~t   54 (83)
T cd06404           2 RVKAAYNGDIMITSIDP--SISLEELCNEVRDMCRF-------------------------HNDQPFTLKWIDEEGDPCT   54 (83)
T ss_pred             eEEEEecCcEEEEEcCC--CcCHHHHHHHHHHHhCC-------------------------CCCCcEEEEEECCCCCcee
Confidence            37999999855555665  77899999999999974                         1234799999999999877


Q ss_pred             ccC
Q 017828          327 VGD  329 (365)
Q Consensus       327 VGD  329 (365)
                      +..
T Consensus        55 iSS   57 (83)
T cd06404          55 ISS   57 (83)
T ss_pred             ecC
Confidence            654

PB1 domain is a modular domain mediating specific protein-protein interaction which play roles in many critical cell processes. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domains, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domain depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic aminoacid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. Interactions of PB1 domains with other protein domains have been described as noncanonical PB1-interactions. The PB1 domain module is conserved in amoebas, fungi,

>cd06409 PB1_MUG70 The MUG70 protein is a product of the meiotically up-regulated gene 70 which has a role in meiosis and harbors a PB1 domain

Probab=94.95  E-value=0.051  Score=45.10  Aligned_cols=51  Identities=20%  Similarity=0.331  Sum_probs=37.9

Q ss_pred             CcccceecCC--CCCChHHHHHHHHHhhccccccccCCCCCcchhhhhhhhhccccCCCceEEEEEcCCCCeEEcc
Q 017828          255 APYLRKVDLK--NYSKYQELSSALEKMFSCFTIGQYGSHGALGREMLSESKLKDLLHGSEFVLTYEDKDGDWMLVG  328 (365)
Q Consensus       255 ~pIGRKVDL~--~y~sY~eLs~aLe~MF~~f~~gq~g~~g~~g~e~~~e~kL~dll~gseyvLtYEDkEGDwMLVG  328 (365)
                      .|-||.+=++  ...||.+|..++.+-|+.-.                       .....|.|.|.|.||||.+.-
T Consensus         7 ~~~GrvhRf~~~~s~~~~~L~~~I~~Rl~~d~-----------------------~~~~~~~L~YlDDEgD~VllT   59 (86)
T cd06409           7 DPKGRVHRFRLRPSESLEELRTLISQRLGDDD-----------------------FETHLYALSYVDDEGDIVLIT   59 (86)
T ss_pred             CCCCCEEEEEecCCCCHHHHHHHHHHHhCCcc-----------------------ccCCcccEEEEcCCCCEEEEe
Confidence            4567765544  37899999999999996410                       002469999999999999864

The PB1 domain is a modular domain mediating specific protein-protein interactions which play a role in many critical cell processes such as osteoclastogenesis, angiogenesis, early cardiovascular development, and cell polarity. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domains, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domains depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic amino acid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. Interactions of PB1 domains with other protein domains have been described as noncanonical PB1-interactions. The PB1 domain module is

>cd06402 PB1_p62 The PB1 domain is an essential part of p62 scaffold protein (alias sequestosome 1,SQSTM) involved in cell signaling, receptor internalization, and protein turnover

Probab=94.94  E-value=0.098  Score=43.51  Aligned_cols=59  Identities=27%  Similarity=0.481  Sum_probs=43.6

Q ss_pred             ceEEEeecC---Cccccee--cCCCCCChHHHHHHHHHhhccccccccCCCCCcchhhhhhhhhccccCCCceEEEEEcC
Q 017828          246 LFVKVSMDG---APYLRKV--DLKNYSKYQELSSALEKMFSCFTIGQYGSHGALGREMLSESKLKDLLHGSEFVLTYEDK  320 (365)
Q Consensus       246 ~yVKV~MDG---~pIGRKV--DL~~y~sY~eLs~aLe~MF~~f~~gq~g~~g~~g~e~~~e~kL~dll~gseyvLtYEDk  320 (365)
                      +.||.+..|   .+=-|.+  |=....+|++|...+.++|..                         +.+..|+|.|.|.
T Consensus         1 ~~vkayl~~~~~~~EIRRf~l~~~~~~s~~~L~~~V~~~f~~-------------------------l~~~~ftlky~De   55 (87)
T cd06402           1 LTVKAYLLGKDANAEIRRFAIDEDVSTSYEYLVEKVAAVFPS-------------------------LRGKNFQLFWKDE   55 (87)
T ss_pred             CeEEEeecCCCCccceEEEEecCCCCcCHHHHHHHHHHHccc-------------------------cCCCcEEEEEECC
Confidence            367777766   2333444  446667999999999999963                         1235799999999


Q ss_pred             CCCeEEccC
Q 017828          321 DGDWMLVGD  329 (365)
Q Consensus       321 EGDwMLVGD  329 (365)
                      |||..-+..
T Consensus        56 eGDlvtIss   64 (87)
T cd06402          56 EGDLVAFSS   64 (87)
T ss_pred             CCCEEeecC
Confidence            999987765

The PB1 domain is a modular domain mediating specific protein-protein interaction which play roles in many critical cell processes. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domains, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domain depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic aminoacid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. Interactions of PB1 domains with other protein domains have been described as noncanonical PB1-interactions. The PB1 domain module is conserved in amoebas, fungi, animals, and plants.

>cd06403 PB1_Par6 The PB1 domain is an essential part of Par6 protein which in complex with Par3 and aPKC proteins is crucial for establishment of apical-basal polarity of animal cells

Probab=94.64  E-value=0.083  Score=43.63  Aligned_cols=68  Identities=19%  Similarity=0.332  Sum_probs=49.6

Q ss_pred             EEEeecCCcccceecCCCCCChHHHHHHHHHhhccccccccCCCCCcchhhhhhhhhccccCCCceEEEEEcCCCCeEEc
Q 017828          248 VKVSMDGAPYLRKVDLKNYSKYQELSSALEKMFSCFTIGQYGSHGALGREMLSESKLKDLLHGSEFVLTYEDKDGDWMLV  327 (365)
Q Consensus       248 VKV~MDG~pIGRKVDL~~y~sY~eLs~aLe~MF~~f~~gq~g~~g~~g~e~~~e~kL~dll~gseyvLtYEDkEGDwMLV  327 (365)
                      ||..-|..=-=-.+|.....+|++++.-|++||..                          .+..|+|-|.|.+||.+-+
T Consensus         3 VKSkfdaEfRRFsl~r~~~~~f~ef~~ll~~lH~l--------------------------~~~~f~i~Y~D~~gDLLPI   56 (80)
T cd06403           3 VKSKFDAEFRRFSLDRNKPGKFEDFYKLLEHLHHI--------------------------PNVDFLIGYTDPHGDLLPI   56 (80)
T ss_pred             eecccCCeEEEEEeccccCcCHHHHHHHHHHHhCC--------------------------CCCcEEEEEeCCCCCEecc
Confidence            66666666222245555569999999999999974                          1247999999999999977


Q ss_pred             c-CcChHHHhhhcce
Q 017828          328 G-DVPWEMFIGTCKR  341 (365)
Q Consensus       328 G-DVPWemFv~svKR  341 (365)
                      - |+-+..=++++++
T Consensus        57 nNDdNf~kAlssa~p   71 (80)
T cd06403          57 NNDDNFLKALSSANP   71 (80)
T ss_pred             cCcHHHHHHHHcCCC
Confidence            5 4566666677773

The PB1 domain is a modular domain mediating specific protein-protein interactions which play a role in many critical cell processes. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domains, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domain depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic aminoacid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. Interactions of PB1 domains with other protein domains have been described as noncanonical PB1-interactions. The PB1 domain module is conserved in amoebas, fungi, animals, and plants. The

>cd06397 PB1_UP1 Uncharacterized protein 1

Probab=92.92  E-value=0.34  Score=40.27  Aligned_cols=66  Identities=23%  Similarity=0.346  Sum_probs=51.1

Q ss_pred             EEEeecCCcccceecCCCCCChHHHHHHHHHhhccccccccCCCCCcchhhhhhhhhccccCCCceEEEEEcCCCCeEEc
Q 017828          248 VKVSMDGAPYLRKVDLKNYSKYQELSSALEKMFSCFTIGQYGSHGALGREMLSESKLKDLLHGSEFVLTYEDKDGDWMLV  327 (365)
Q Consensus       248 VKV~MDG~pIGRKVDL~~y~sY~eLs~aLe~MF~~f~~gq~g~~g~~g~e~~~e~kL~dll~gseyvLtYEDkEGDwMLV  327 (365)
                      -||+-+|.  .|++-...-=+|..|.+.|+.+|....                          -.+.|||.|.|||..-+
T Consensus         3 fKv~~~g~--~RRf~~~~~pt~~~L~~kl~~Lf~lp~--------------------------~~~~vtYiDeD~D~ITl   54 (82)
T cd06397           3 FKSSFLGD--TRRIVFPDIPTWEALASKLENLYNLPE--------------------------IKVGVTYIDNDNDEITL   54 (82)
T ss_pred             EEEEeCCc--eEEEecCCCccHHHHHHHHHHHhCCCh--------------------------hHeEEEEEcCCCCEEEe
Confidence            48888887  899988888999999999999998521                          13789999999998755


Q ss_pred             cC-cChHHHhhhcce
Q 017828          328 GD-VPWEMFIGTCKR  341 (365)
Q Consensus       328 GD-VPWemFv~svKR  341 (365)
                      -| .=.+.|..-..|
T Consensus        55 ssd~eL~d~~~~~~~   69 (82)
T cd06397          55 SSNKELQDFYRLSHR   69 (82)
T ss_pred             cchHHHHHHHHhccc
Confidence            44 556666554444

The PB1 domain is a modular domain mediating specific protein-protein interaction which play a role in many critical cell processes, such as osteoclastogenesis, angiogenesis, early cardiovascular development, and cell polarity. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domain, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domain depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic aminoacid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. Interactions of PB1 domains with other protein domains have been described as noncanonical PB1-interactions.

>cd06408 PB1_NoxR The PB1 domain is present in the Epichloe festucae NoxR protein (NADPH oxidase regulator), a key regulator of NADPH oxidase isoform, NoxA

Probab=90.53  E-value=0.83  Score=38.09  Aligned_cols=65  Identities=20%  Similarity=0.373  Sum_probs=51.5

Q ss_pred             ceEEEeecCCcccceecCCCCCChHHHHHHHHHhhccccccccCCCCCcchhhhhhhhhccccCCCceEEEEEcCCCCeE
Q 017828          246 LFVKVSMDGAPYLRKVDLKNYSKYQELSSALEKMFSCFTIGQYGSHGALGREMLSESKLKDLLHGSEFVLTYEDKDGDWM  325 (365)
Q Consensus       246 ~yVKV~MDG~pIGRKVDL~~y~sY~eLs~aLe~MF~~f~~gq~g~~g~~g~e~~~e~kL~dll~gseyvLtYEDkEGDwM  325 (365)
                      +-|||+-.|.  .|-|-+..--+|++|...+.++|..                           ...++|-|.|. ||..
T Consensus         3 ikVKv~~~~D--v~~i~v~~~i~f~dL~~kIrdkf~~---------------------------~~~~~iKykDE-GD~i   52 (86)
T cd06408           3 IRVKVHAQDD--TRYIMIGPDTGFADFEDKIRDKFGF---------------------------KRRLKIKMKDD-GDMI   52 (86)
T ss_pred             EEEEEEecCc--EEEEEcCCCCCHHHHHHHHHHHhCC---------------------------CCceEEEEEcC-CCCc
Confidence            5689999998  6777777778899999999999974                           12689999999 9999


Q ss_pred             EccCc-ChHHHhhhcc
Q 017828          326 LVGDV-PWEMFIGTCK  340 (365)
Q Consensus       326 LVGDV-PWemFv~svK  340 (365)
                      -++|- =.++-+.++|
T Consensus        53 ti~sq~DLd~Ai~~a~   68 (86)
T cd06408          53 TMGDQDDLDMAIDTAR   68 (86)
T ss_pred             cccCHHHHHHHHHHHH
Confidence            88873 4455555555

NoxA is essential for growth control of the fungal endophyte in plant tissue in the process of symbiotic interaction between a fungi and its plant host. The Epichloe festucae p67(phox)-like regulator, NoxR, dispensable in culture but essential in plants for the symbiotic interaction. Plants infected with a noxR deletion mutant show severe stunting and premature senescence, whereas hyphae in the meristematic tissues show increased branching leading to increased fungal colonization of pseudostem and leaf blade tissue. The PB1 domain is a modular domain mediating specific protein-protein interactions which a play role in many critical cell processes such as osteoclastogenesis, angiogenesis, early cardiovascular development, and cell polarity. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domains, is

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	365
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	1e-05
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	5e-05
1qzv_F	154	Plant photosystem I: subunit PSAF; photosynthesis,	9e-04

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 46.0 bits (108), Expect = 1e-05
 Identities = 48/269 (17%), Positives = 86/269 (31%), Gaps = 76/269 (28%)

Query: 117 QKNVVSGNKRGF-------SDAMDGFLEGKYLSSSELLSPRAAPNLGLKSGSIQENLGPQ 169
            K+ VSG  R F        + +  F+E       E+L      N       I+      
Sbjct: 57  SKDAVSGTLRLFWTLLSKQEEMVQKFVE-------EVL----RINYKFLMSPIKTE---- 101

Query: 170 TAKGKEMANQKAVQERPHVNNETITNHNGSASNSSSAPAAKAQVVGWPPIRSFRKNSLAT 229
             +   M  +  +++R  + N              +   AK  V    P    R+  L  
Sbjct: 102 -QRQPSMMTRMYIEQRDRLYN-------------DNQVFAKYNVSRLQPYLKLRQALLEL 147

Query: 230 SSKNNDEVDGKAGS--SALFVKVSMDGAPYLRK------VDLKNYSKYQELSSALEKMFS 281
               N  +DG  GS  + + + V +      +       ++LKN +  + +   L+K+  
Sbjct: 148 RPAKNVLIDGVLGSGKTWVALDVCLSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQKL-- 205

Query: 282 CFTIG----QYGSHGALGREMLSESK--LKDLLHGSEF-----VLTYEDKDGDWMLVGDV 330
            + I         H +  +  +   +  L+ LL    +     VL             +V
Sbjct: 206 LYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVL-------L-----NV 253

Query: 331 ----PWEMFIGTCKRL---RIMKSTDAIG 352
                W  F  +CK L   R  + TD + 
Sbjct: 254 QNAKAWNAFNLSCKILLTTRFKQVTDFLS 282

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 44.1 bits (103), Expect = 5e-05
 Identities = 50/346 (14%), Positives = 94/346 (27%), Gaps = 118/346 (34%)

Query: 51  DSSVVSSVSGESSK------SSLNLKATELR------LGLPGSQSPERGSELCLLGP--- 95
              V   +S  ++        S+ L   E++      L       P    E+    P   
Sbjct: 274 FKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQDLPR---EVLTTNPRRL 330

Query: 96  ----AQLDEKPLFPLHPTSDSHYPSQKNVVSGNKRGFSDAMDGFLEGKYLSSSEL----- 146
                 + +        T D ++   K+V   N    +  ++  L    L  +E      
Sbjct: 331 SIIAESIRDGLA-----TWD-NW---KHV---NCDKLTTIIESSLN--VLEPAEYRKMFD 376

Query: 147 -LS--PRAAPNLGLKSGSIQ---ENLGPQTAKG--KEMANQKAVQERPHVNNETITNHNG 198
            LS  P   P+  + +  +     ++          ++     V+++P     TI+  + 
Sbjct: 377 RLSVFP---PSAHIPTILLSLIWFDVIKSDVMVVVNKLHKYSLVEKQP--KESTISIPSI 431

Query: 199 SASNSSSAPAAKA---QVVG-WPPIRSFRKNSLATSSKNNDEVDG--------------K 240
                       A    +V  +   ++F  + L         +D                
Sbjct: 432 YLELKVKLENEYALHRSIVDHYNIPKTFDSDDLIP-----PYLDQYFYSHIGHHLKNIEH 486

Query: 241 AGSSALF-----------VKVSMDGAPYLRK-------VDLKNYSKY--------QELSS 274
                LF            K+  D   +            LK Y  Y        + L +
Sbjct: 487 PERMTLFRMVFLDFRFLEQKIRHDSTAWNASGSILNTLQQLKFYKPYICDNDPKYERLVN 546

Query: 275 ALEKMFSCFTIGQYGSHGALGREMLSESKLKDLLHGSEFVLTYEDK 320
           A+   F    + +   +       L  SK  DLL      L  ED+
Sbjct: 547 AILD-F----LPKIEEN-------LICSKYTDLLR---IALMAEDE 577

>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant photosynthetic reaction center, peripheral antenna; HET: CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1 Length = 154

 Score = 38.4 bits (88), Expect = 9e-04
 Identities = 8/26 (30%), Positives = 17/26 (65%), Gaps = 2/26 (7%)

Query: 139 KYLSSS-ELLSPRAAPNLGLKSGSIQ 163
           K L +S +L +  +AP L +K+ +++
Sbjct: 23  KKLQASLKLYADDSAPALAIKA-TME 47

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	365
1wmh_B	86	Partitioning defective-6 homolog alpha; kinase, PB	96.14
1vd2_A	89	Protein kinase C, IOTA type; PB1 domain, OPCA moti	96.08
2kkc_A	102	Sequestosome-1; P62, PB1, autophagy, ubiquitin-pro	94.63
2ktr_A	117	Sequestosome-1; autophagy, NF-KB signaling, HOMO-o	93.68
1q1o_A	98	Cell division control protein 24; PB1 domain, PCCR	91.74

>1wmh_B Partitioning defective-6 homolog alpha; kinase, PB1 domain, OPCA motif, APKC, cell polarity, transferase/cell cycle complex; 1.50A {Homo sapiens} SCOP: d.15.2.2

Probab=96.14  E-value=0.016  Score=47.04  Aligned_cols=76  Identities=22%  Similarity=0.263  Sum_probs=55.7

Q ss_pred             CCcceEEEeecCCcccceecCCCCCChHHHHHHHHHhhccccccccCCCCCcchhhhhhhhhccccCCCceEEEEEcCCC
Q 017828          243 SSALFVKVSMDGAPYLRKVDLKNYSKYQELSSALEKMFSCFTIGQYGSHGALGREMLSESKLKDLLHGSEFVLTYEDKDG  322 (365)
Q Consensus       243 ~~~~yVKV~MDG~pIGRKVDL~~y~sY~eLs~aLe~MF~~f~~gq~g~~g~~g~e~~~e~kL~dll~gseyvLtYEDkEG  322 (365)
                      .+.+-||..-|..--=-.+|-....+|++|..-|+++|..                          ....|++.|.|.||
T Consensus         4 ~~~l~vKskf~aE~RRFs~d~~~~~~fe~f~~lv~~lh~L--------------------------~~~~f~i~Y~D~dG   57 (86)
T 1wmh_B            4 MSIVEVKSKFDAEFRRFALPRASVSGFQEFSRLLRAVHQI--------------------------PGLDVLLGYTDAHG   57 (86)
T ss_dssp             -CEEEEEEEETTEEEEEEEEGGGCCCHHHHHHHHHHHTTC--------------------------TTCCCEEEEECTTS
T ss_pred             CCEEEEEeecCCeeeEeEccCCCCCCHHHHHHHHHHHcCC--------------------------CCCCEEEEEECCCC
Confidence            4567888888887333345555678999999999999973                          12369999999999


Q ss_pred             CeEEccCc-ChHHHhhhcc---eeEE
Q 017828          323 DWMLVGDV-PWEMFIGTCK---RLRI  344 (365)
Q Consensus       323 DwMLVGDV-PWemFv~svK---RLrI  344 (365)
                      |++-+-+. =..+=+.++|   ||.|
T Consensus        58 DLlpInnDdnl~~Al~~a~plLRl~I   83 (86)
T 1wmh_B           58 DLLPLTNDDSLHRALASGPPPLRLLV   83 (86)
T ss_dssp             CEEECCSHHHHHHHTTSSSSCEEEEE
T ss_pred             CEeeecCHHHHHHHHHhCCCcEEEEE
Confidence            99987654 4555566777   4444

>1vd2_A Protein kinase C, IOTA type; PB1 domain, OPCA motif, APKC, ZIP/P62, MEK5, molecular recognition, transferase; NMR {Homo sapiens} SCOP: d.15.2.2 PDB: 1wmh_A

Probab=96.08  E-value=0.014  Score=47.45  Aligned_cols=59  Identities=20%  Similarity=0.262  Sum_probs=45.6

Q ss_pred             CcceEEEeecCCcccceecCCCCCChHHHHHHHHHhhccccccccCCCCCcchhhhhhhhhccccCCCceEEEEEcCCCC
Q 017828          244 SALFVKVSMDGAPYLRKVDLKNYSKYQELSSALEKMFSCFTIGQYGSHGALGREMLSESKLKDLLHGSEFVLTYEDKDGD  323 (365)
Q Consensus       244 ~~~yVKV~MDG~pIGRKVDL~~y~sY~eLs~aLe~MF~~f~~gq~g~~g~~g~e~~~e~kL~dll~gseyvLtYEDkEGD  323 (365)
                      +.+=|||+-.|.-+  -+.+...-+|++|...|.++|..                         ..+..+++.|.|.|||
T Consensus         5 ~~vkvK~~~~gdi~--~~~v~~~i~~~~L~~kv~~~~~~-------------------------~~~~~f~lky~DEeGD   57 (89)
T 1vd2_A            5 SQVRVKAYYRGDIM--ITHFEPSISFEGLCNEVRDMCSF-------------------------DNEQLFTMKWIDEEGD   57 (89)
T ss_dssp             SCEEEEEESSSCEE--EEEECTTCCHHHHHHHHHHHTTC-------------------------CSSCCEEEEECCSSSC
T ss_pred             CeEEEEEEeCCeEE--EEECCCCCCHHHHHHHHHHHhCC-------------------------CCCCeEEEEEECCCCC
Confidence            45789999999844  44444467999999999999974                         1134799999999999


Q ss_pred             eEEccC
Q 017828          324 WMLVGD  329 (365)
Q Consensus       324 wMLVGD  329 (365)
                      +.-+-.
T Consensus        58 ~itisS   63 (89)
T 1vd2_A           58 PCTVSS   63 (89)
T ss_dssp             CEECCS
T ss_pred             cccccC
Confidence            876543

>2kkc_A Sequestosome-1; P62, PB1, autophagy, ubiquitin-proteasome system, NF-KB signaling, alternative splicing, apoptosis, cytoplasm, differentiation; NMR {Rattus norvegicus} PDB: 2ktr_B

Probab=94.63  E-value=0.043  Score=45.54  Aligned_cols=61  Identities=21%  Similarity=0.292  Sum_probs=44.3

Q ss_pred             cceEEEeecCC----cccceecCCC-----------CCChHHHHHHHHHhhccccccccCCCCCcchhhhhhhhhccccC
Q 017828          245 ALFVKVSMDGA----PYLRKVDLKN-----------YSKYQELSSALEKMFSCFTIGQYGSHGALGREMLSESKLKDLLH  309 (365)
Q Consensus       245 ~~yVKV~MDG~----pIGRKVDL~~-----------y~sY~eLs~aLe~MF~~f~~gq~g~~g~~g~e~~~e~kL~dll~  309 (365)
                      ++-||++..|.    .=-|++=|..           ..+|++|...+.++|..                         +.
T Consensus         5 ~~~vKayl~~~~~~~~EiRRF~l~~~~~p~~~~~~~~~s~~~L~~~V~~lFp~-------------------------l~   59 (102)
T 2kkc_A            5 SLTVKAYLLGKEEAAREIRRFSFCFSPEPEAEAAAGPGPCERLLSRVAVLFPA-------------------------LR   59 (102)
T ss_dssp             EEEEEEEEECSSSCEEEEEEEEEESSSCSCSSSCCSCCHHHHHHHHHHHHCTT-------------------------SC
T ss_pred             eEEEEEEEccCCCCCCceEEEEeccCCCcccccccccccHHHHHHHHHHHccc-------------------------cC
Confidence            46788888752    2335544431           24899999999999963                         22


Q ss_pred             CCceEEEEEcCCCCeEEccCc
Q 017828          310 GSEFVLTYEDKDGDWMLVGDV  330 (365)
Q Consensus       310 gseyvLtYEDkEGDwMLVGDV  330 (365)
                      +..|+|.|.|.|||+.-+-+.
T Consensus        60 ~~~f~l~Y~DedGDlItiSsD   80 (102)
T 2kkc_A           60 PGGFQAHYRAERGDLVAFSSD   80 (102)
T ss_dssp             SSCEEEEEECTTCCEEEECSH
T ss_pred             CCcEEEEEECCCCCEEEecCH
Confidence            457999999999999877664

>2ktr_A Sequestosome-1; autophagy, NF-KB signaling, HOMO-oligomer, PB1 dimer, signaling protein, transport protein; NMR {Rattus norvegicus}

Probab=93.68  E-value=0.1  Score=44.32  Aligned_cols=72  Identities=21%  Similarity=0.282  Sum_probs=48.6

Q ss_pred             CcceEEEeecCC----cccceecCC-----------CCCChHHHHHHHHHhhccccccccCCCCCcchhhhhhhhhcccc
Q 017828          244 SALFVKVSMDGA----PYLRKVDLK-----------NYSKYQELSSALEKMFSCFTIGQYGSHGALGREMLSESKLKDLL  308 (365)
Q Consensus       244 ~~~yVKV~MDG~----pIGRKVDL~-----------~y~sY~eLs~aLe~MF~~f~~gq~g~~g~~g~e~~~e~kL~dll  308 (365)
                      ..+-||++..|.    .==|++=|.           .-.+|++|...+.++|..                         |
T Consensus        19 ~~l~vKayl~~~~~~~~EIRRF~l~~~~~p~~~~~~~~~s~~~L~~kV~~lFp~-------------------------L   73 (117)
T 2ktr_A           19 GSLTVKAYLLGKEEAAREIRRFSFCFSPEPEAEAAAGPGPSERLLSRVAVLFPA-------------------------L   73 (117)
T ss_dssp             -CEEEEEEEECSSSCEEEEEEEEECSSSCSCSSSCCSCCHHHHHHHHHHHHCTT-------------------------S
T ss_pred             ccEEEEEEEecCCCCCCcEEEEEeccCCCccccccccCCCHHHHHHHHHHHccc-------------------------c
Confidence            468899998752    123554443           245999999999999963                         2


Q ss_pred             CCCceEEEEEcCCCCeEEccCc-ChHHHhhhcc
Q 017828          309 HGSEFVLTYEDKDGDWMLVGDV-PWEMFIGTCK  340 (365)
Q Consensus       309 ~gseyvLtYEDkEGDwMLVGDV-PWemFv~svK  340 (365)
                      .+..|+|.|.|.|||+.-+-.. =..+=+.+++
T Consensus        74 ~~~~f~l~YkDEdGDlItISsDeEL~~Al~~~~  106 (117)
T 2ktr_A           74 RPGGFQAHYRAERGDLVAFSSDEELTMAMSYVK  106 (117)
T ss_dssp             CSSCEEEEEECTTCCEEEECSHHHHHHHHHHCC
T ss_pred             CCCcEEEEEECCCCCEEEecCHHHHHHHHHhcC
Confidence            2457999999999999877653 3333333433

>1q1o_A Cell division control protein 24; PB1 domain, PCCR, PC motif, OPCA motif, yeast, cell polarity, protein-protein interaction; NMR {Saccharomyces cerevisiae} SCOP: d.15.2.2 PDB: 2kfj_A 2kfk_B

Probab=91.74  E-value=0.54  Score=38.84  Aligned_cols=76  Identities=14%  Similarity=0.351  Sum_probs=55.0

Q ss_pred             CcceEEEeecCCc----c--cceecCCCCCChHHHHHHHHHhhccccccccCCCCCcchhhhhhhhhccccCCCceEEEE
Q 017828          244 SALFVKVSMDGAP----Y--LRKVDLKNYSKYQELSSALEKMFSCFTIGQYGSHGALGREMLSESKLKDLLHGSEFVLTY  317 (365)
Q Consensus       244 ~~~yVKV~MDG~p----I--GRKVDL~~y~sY~eLs~aLe~MF~~f~~gq~g~~g~~g~e~~~e~kL~dll~gseyvLtY  317 (365)
                      +++-|||+-+...    +  .|.|=+..--+|++|...+.+-|..+..           +        +.  .....|-|
T Consensus         4 ~sikVKv~y~~~~~~~~~~d~~~i~V~~~i~f~~L~~kI~~Kl~~~~~-----------~--------~i--~~~~klkY   62 (98)
T 1q1o_A            4 GSILFRISYNNNSNNTSSSEIFTLLVEKVWNFDDLIMAINSKISNTHN-----------N--------NI--SPITKIKY   62 (98)
T ss_dssp             SCEEEEEEECSSCSSCCCCEEEEEEECTTCCHHHHHHHHHHHHHHHCS-----------S--------CC--CCCCCEEE
T ss_pred             ccEEEEEEecCcccccccCcEEEEEecCCCCHHHHHHHHHHHHcCCcc-----------c--------cc--cceeEEEE
Confidence            4578899887431    2  3666677888999999999999975210           0        00  12467999


Q ss_pred             EcCCCCeEEccC-cChHHHhhhcc
Q 017828          318 EDKDGDWMLVGD-VPWEMFIGTCK  340 (365)
Q Consensus       318 EDkEGDwMLVGD-VPWemFv~svK  340 (365)
                      +|.|||+...++ .=|+|-++++|
T Consensus        63 kDEdGD~Vtl~sddDl~~A~e~~~   86 (98)
T 1q1o_A           63 QDEDGDFVVLGSDEDWNVAKEMLA   86 (98)
T ss_dssp             ECSSSCEEEECSHHHHHHHHHHHH
T ss_pred             EcCCCCEEEEcCHHHHHHHHHHHH
Confidence            999999988776 58999888874

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	365
d2bkfa1	85	Next to BRCA1 gene 1 protein, NBR1 (KIAA0049) {Hum	96.63
d1ip9a_	85	Bud emergence mediator Bemp1 {Baker's yeast (Sacch	95.79

>d2bkfa1 d.15.2.2 (A:1-85) Next to BRCA1 gene 1 protein, NBR1 (KIAA0049) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: CAD & PB1 domains
family: PB1 domain
domain: Next to BRCA1 gene 1 protein, NBR1 (KIAA0049)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.63  E-value=0.0015  Score=50.95  Aligned_cols=66  Identities=9%  Similarity=0.178  Sum_probs=51.5

Q ss_pred             ceEEEeecCCcccceecCCCCCChHHHHHHHHHhhccccccccCCCCCcchhhhhhhhhccccCCCceEEEEEcCCCCeE
Q 017828          246 LFVKVSMDGAPYLRKVDLKNYSKYQELSSALEKMFSCFTIGQYGSHGALGREMLSESKLKDLLHGSEFVLTYEDKDGDWM  325 (365)
Q Consensus       246 ~yVKV~MDG~pIGRKVDL~~y~sY~eLs~aLe~MF~~f~~gq~g~~g~~g~e~~~e~kL~dll~gseyvLtYEDkEGDwM  325 (365)
                      .-|||+..|..|=-+|-+....+|.+|...|.+.|..                            ..+.|.|.|.|+||.
T Consensus         5 vtvKvtf~~dt~RF~ls~~~~~~~~~L~~~i~~rf~l----------------------------~~~~lkY~Ddd~e~v   56 (85)
T d2bkfa1           5 VTLNVTFKNEIQSFLVSDPENTTWADIEAMVKVSFDL----------------------------NTIQIKYLDEENEEV   56 (85)
T ss_dssp             EEEEEEETTEEEEEEESCGGGCCHHHHHHHHHHHHTC----------------------------SSEEEEEECTTSCEE
T ss_pred             EEEEEEECCceEEEEecCCCCCcHHHHHHHHHHhcCc----------------------------ccceEEEEcCCCCEE
Confidence            4689999888665577777889999999999999963                            137899999999998


Q ss_pred             Ecc-CcChHHHhhhc
Q 017828          326 LVG-DVPWEMFIGTC  339 (365)
Q Consensus       326 LVG-DVPWemFv~sv  339 (365)
                      ++. |.=.++.+..+
T Consensus        57 ~l~~d~dl~E~~~~a   71 (85)
T d2bkfa1          57 SINSQGEYEEALKMA   71 (85)
T ss_dssp             EECSHHHHHHHHHHH
T ss_pred             EEecHHHHHHHHHHH
Confidence            775 44555555443

>d1ip9a_ d.15.2.2 (A:) Bud emergence mediator Bemp1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: CAD & PB1 domains
family: PB1 domain
domain: Bud emergence mediator Bemp1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=95.79  E-value=0.0082  Score=45.74  Aligned_cols=72  Identities=17%  Similarity=0.130  Sum_probs=53.5

Q ss_pred             CCcceEEEeecCCcccceecCCCCCChHHHHHHHHHhhccccccccCCCCCcchhhhhhhhhccccCCCceEEEEEcCCC
Q 017828          243 SSALFVKVSMDGAPYLRKVDLKNYSKYQELSSALEKMFSCFTIGQYGSHGALGREMLSESKLKDLLHGSEFVLTYEDKDG  322 (365)
Q Consensus       243 ~~~~yVKV~MDG~pIGRKVDL~~y~sY~eLs~aLe~MF~~f~~gq~g~~g~~g~e~~~e~kL~dll~gseyvLtYEDkEG  322 (365)
                      .+..-|||+..+.-  |.+=|..--+|.+|...+.+.|..                            ..++|-|+|.||
T Consensus        10 ~~~ikVKv~~~~D~--~~~~l~~~it~~dL~~kI~~rf~~----------------------------~~~~lkY~Dedg   59 (85)
T d1ip9a_          10 LKTTKIKFYYKDDI--FALMLKGDTTYKELRSKIAPRIDT----------------------------DNFKLQTKLFDG   59 (85)
T ss_dssp             CCCEEEEECBTTCC--EEEEECSCCCHHHHHHHHHHHHTS----------------------------SCEEEEECCSSS
T ss_pred             CCCEEEEEEECCcE--EEEEeCCCCCHHHHHHHHHHHhCC----------------------------CceEEEEEcCCC
Confidence            45688999999984  444455567899999999999963                            148899999999


Q ss_pred             CeEEccC-cChHHHhhhcceeEE
Q 017828          323 DWMLVGD-VPWEMFIGTCKRLRI  344 (365)
Q Consensus       323 DwMLVGD-VPWemFv~svKRLrI  344 (365)
                      ||..+-+ .=|++-++...||.+
T Consensus        60 d~v~i~sD~Dl~~ai~~~~kl~v   82 (85)
T d1ip9a_          60 SGEEIKTDSQVSNIIQAKLKISV   82 (85)
T ss_dssp             CCSCCCSHHHHHHHHHTTCCEEE
T ss_pred             CEEEEeCHHHHHHHHHhcCcEEE
Confidence            9986544 456666665555543