Citrus Sinensis ID: 017834

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-----
Protein Sequence
MFAMNPQPLQARPYIDTEEHDVAQTPIPIQNGSKQGDRYDEPEEVEDEAGASSVNRKSNDRGGSSVQSSTSTRTSELTVAYEGEVYVFPAVTPHKVQALLLLLGECDIPSTVPSSAFAQPQNIMSGGSASNGSKLSQRIASLVRFREKRKERSFEKKIRYSCRKEVAQRMQRKNGQFTSSKATFNIASANSNPSNGSAPPESVSRICQHCGISEKLTPAMRRGPAGPRTLCNACGLMWANKGTLRDLTKGARNICFEQHELETSSDIKPATTEAENSYANQDEQGSPHETKPAPLDPQNHSMRSNEQYLLESDDGFACPLPIQEDNSLMNLDDEDLQEAMDELANASGSDFEIPSNFDEQVFICV
Secondary Structure (PSIPRED)
cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccEEEEccEEEEccccccHHHHHHHHHccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHccccccccccccccccccEEcc
Secondary Structure Prediction (SSPRO)
cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccEEEEEEccEEEEEccccHHHHHHHHHHHcccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHcccccEEEHHHHHHHHHHcccccccEEccccccccccccccccccccccccccHHEccccccccccccccccccccccHHHHHHHHHHccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHccccccccEEEccccccccHHHHccHHHHcccccccEEccccccccEEEEc
Coil and Loop (DISEMBL)
mfamnpqplqarpyidteehdvaqtpipiqngskqgdrydepeevedeagassvnrksndrggssvqsststrtseltvayegevyvfpavtPHKVQALLLLLgecdipstvpssafaqpqnimsggsasngskLSQRIASLVRFREKRKERSFEKKIRYSCRKEVAQRMQrkngqftsskATFNIasansnpsngsappesVSRICqhcgisekltpamrrgpagprtlcnacglmwankgtlrdltkgarnicfeqheletssdikpatteaensyanqdeqgsphetkpapldpqnhsmrsneqyllesddgfacplpiqednslmnlddeDLQEAMDELAnasgsdfeipsnfdeqvficv
Flexible Loop (DISEMBL)
mfamnpqplQARPYIDTEEHDVAqtpipiqngskqgdrYDEPEEVEdeagassvnrksndrggssvqsststrtseLTVAYEGEVYVFPAVTPHKVQALLLLLGECDIPSTVPSSAFAQPQNImsggsasngsklSQRIASLVrfrekrkersfekkiryscrKEVAqrmqrkngqftssKATFNIASANSNPSNGSAPPESVSRICQHCGISEKLTPAMRRGPAGPRTLCNACGLMWANKGTLRDLTKGARNICFEqheletssdikpATTEAENSYanqdeqgspheTKPAPLDPQNHSMRSNEQYLLESDDGFACPLPIQEDNSLMNLDDEDLQEAMDELANASgsdfeipsnfDEQVFICV
Low Complexity Region (SEG)
MFAMNPQPLQARPYIDTEEHDVAQTPIPIQNGSKQGDRYDEPEEVEDEAGASSVNRKSNDRGGssvqsststrtsELTVAYEGEVYVFPAVTPHKVQALLLLLGECDIPSTVPSSAFAQPQNIMSGGSASNGSKLSQRIASLVrfrekrkersfekkIRYSCRKEVAQRMQRKNGQFTSSKATFNIasansnpsngsappesVSRICQHCGISEKLTPAMRRGPAGPRTLCNACGLMWANKGTLRDLTKGARNICFEQHELETSSDIKPATTEAENSYANQDEQGSPHETKPAPLDPQNHSMRSNEQYLLESDDGFACPLPIQEDNSLMNLDDEDLQEAMDELANASGSDFEIPSNFDEQVFICV
Disordered region (IsUnstruct)
****************************************************************************LTVAYEGEVYVFPAVTPHKVQALLLLLGECDIPS***********************************************************************************************ICQHCGIS************GPRTLCNACGLMWANKGTLRDLTKGARNICFE************************************************************************************************************
Disordered Region (DISOPRED)
*******************************************************************************AYEGEVYVFPAVTPHKVQA*******************************************************************************TSSKATFNIASANSNPSNGSAPPESVSRICQHCGISEKLTPAMRRGPAGPRTLCNACGLMWA****************************************************************************************************************EIPSNFDEQVFICV
Disordered Region (DISEMBL)
MFAMNPQPLQARPYIDTEEHDVAQTPIPIQNG*******************************************ELTVAYEGEVYVFPAVTPHKVQALLLLLGECDIPSTVPSSAFAQPQNIMS*********LSQRIASLVRFREKRKERSFEKKIRYSCRKEVAQRMQRKNGQFTSSKATFNIASAN*************SRICQHCGISEKLTPAMRRGPAGPRTLCNACGLMWANKGTLRDLTKGARNICFEQHELETSSDIKPATT*******************PAPLDPQNHSMRSNEQYLLESDDGFACPLPIQEDNSLMNLDDEDLQEAMDELANASGSDFEIPSNFDEQVFICV
Disordered Region (DISPRO)
************************************************************************RTSELTVAYEGEVYVFPAVTPHKVQALLLLLGECDIP***************************QRIASLVRFREKRKERSFEKKIRYSCRKEVAQRMQ***********************************CQ*C*ISEKLTPAMRRGPAGPRTLCNACGLMWANKGTLRDL*********************************************************NEQYLLESDDGFACPLPIQEDNSLMNLDDEDLQEAMDELANASGSDFEIPSNFDEQVFICV
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MFAMNPQPLQARPYIDTEEHDVAQTPIPIQNGSKQGDRYDEPEEVEDEAGASSVNRKSNDRGGSSVQSSTSTRTSELTVAYEGEVYVFPAVTPHKVQALLLLLGECDIPSTVPSSAFAQPQNIMSGGSASNGSKLSQRIASLVRFREKRKERSFEKKIRYSCRKEVAQRMQRKNGQFTSSKATFNIASANSNPSNGSAPPESVSRICQHCGISEKLTPAMRRGPAGPRTLCNACGLMWANKGTLRDLTKGARNICFEQHELETSSDIKPATTEAENSYANQDEQGSPHETKPAPLDPQNHSMRSNEQYLLESDDGFACPLPIQEDNSLMNLDDEDLQEAMDELANASGSDFEIPSNFDEQVFICV
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	365	2.2.26 [Sep-21-2011]
Q8GXL7	297	GATA transcription factor	yes	no	0.473	0.582	0.554	2e-50
Q8H1G0	302	GATA transcription factor	no	no	0.531	0.642	0.504	3e-48
Q9LRH6	309	GATA transcription factor	no	no	0.471	0.556	0.534	1e-41
Q93WK5	727	Two-component response re	no	no	0.136	0.068	0.52	1e-07
A2YQ93	742	Two-component response re	N/A	no	0.115	0.056	0.5	2e-06
Q0D3B6	742	Two-component response re	no	no	0.115	0.056	0.5	2e-06
Q550D5	872	Transcription factor stal	yes	no	0.112	0.047	0.534	2e-06
Q55C49	1006	GATA zinc finger domain-c	no	no	0.090	0.032	0.628	3e-06
Q9LKL2	618	Two-component response re	no	no	0.147	0.087	0.444	3e-06
Q9LVG4	495	Two-component response re	no	no	0.134	0.098	0.489	4e-06

>sp|Q8GXL7|GAT24_ARATH GATA transcription factor 24 OS=Arabidopsis thaliana GN=GATA24 PE=2 SV=2

 Score =  199 bits (506), Expect = 2e-50,   Method: Compositional matrix adjust.
 Identities = 102/184 (55%), Positives = 132/184 (71%), Gaps = 11/184 (5%)

Query: 76  ELTVAYEGEVYVFPAVTPHKVQALLLLLGECDIPSTVPSSAFAQPQNIMSGGSASNGSKL 135
           +LT++++G+VYVF  V+P KVQA+LLLLG  ++P T+P++  +  QN    G +    +L
Sbjct: 79  QLTLSFQGQVYVFDRVSPEKVQAVLLLLGGREVPHTLPTTLGSPHQNNRVLGLSGTPQRL 138

Query: 136 S--QRIASLVRFREKRKERSFEKKIRYSCRKEVAQRMQRKNGQFTSSKATFNIASANSNP 193
           S  QR+ASL+RFREKRK R+F+K IRY+ RKEVA RMQRK GQFTS+K++ N  S ++  
Sbjct: 139 SVPQRLASLLRFREKRKGRNFDKTIRYTVRKEVALRMQRKKGQFTSAKSS-NDDSGSTGS 197

Query: 194 SNGSAPPESVSR--------ICQHCGISEKLTPAMRRGPAGPRTLCNACGLMWANKGTLR 245
             GS    +V          +C+HCG SEK TP MRRGP GPRTLCNACGLMWANKGTLR
Sbjct: 198 DWGSNQSWAVEGTETQKPEVLCRHCGTSEKSTPMMRRGPDGPRTLCNACGLMWANKGTLR 257

Query: 246 DLTK 249
           DL+K
Sbjct: 258 DLSK 261

Transcriptional activator that specifically binds 5'-GATA-3' or 5'-GAT-3' motifs within gene promoters.
Arabidopsis thaliana (taxid: 3702)

>sp|Q8H1G0|GAT28_ARATH GATA transcription factor 28 OS=Arabidopsis thaliana GN=GATA28 PE=2 SV=1

 Score =  192 bits (488), Expect = 3e-48,   Method: Compositional matrix adjust.
 Identities = 109/216 (50%), Positives = 139/216 (64%), Gaps = 22/216 (10%)

Query: 71  STRTSELTVAYEGEVYVFPAVTPHKVQALLLLLGECDIPSTVPSSAFAQPQNIMSGGSAS 130
           S +  +LT++++G+VYVF +V P KVQA+LLLLG  ++P   P    +  QN        
Sbjct: 78  SEQGDQLTLSFQGQVYVFDSVLPEKVQAVLLLLGGRELPQAAPPGLGSPHQNNRVSSLPG 137

Query: 131 NGSKLS--QRIASLVRFREKRKERSFEKKIRYSCRKEVAQRMQRKNGQFTSSKATFNIAS 188
              + S  QR+ASLVRFREKRK R+F+KKIRY+ RKEVA RMQR  GQFTS+K+  N  +
Sbjct: 138 TPQRFSIPQRLASLVRFREKRKGRNFDKKIRYTVRKEVALRMQRNKGQFTSAKSN-NDEA 196

Query: 189 ANSNPSNGS----------APPESVSRICQHCGISEKLTPAMRRGPAGPRTLCNACGLMW 238
           A++  S GS          A  + +S  C+HCGI EK TP MRRGPAGPRTLCNACGLMW
Sbjct: 197 ASAGSSWGSNQTWAIESSEAQHQEIS--CRHCGIGEKSTPMMRRGPAGPRTLCNACGLMW 254

Query: 239 ANKGTLRDLTKG----ARNICFEQHE---LETSSDI 267
           ANKG  RDL+K     A+N+   ++E   LET   I
Sbjct: 255 ANKGAFRDLSKASPQTAQNLPLNKNEDANLETDHQI 290

Transcriptional activator that specifically binds 5'-GATA-3' or 5'-GAT-3' motifs within gene promoters.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9LRH6|GAT25_ARATH GATA transcription factor 25 OS=Arabidopsis thaliana GN=GATA25 PE=2 SV=2

 Score =  170 bits (431), Expect = 1e-41,   Method: Compositional matrix adjust.
 Identities = 94/176 (53%), Positives = 111/176 (63%), Gaps = 4/176 (2%)

Query: 76  ELTVAYEGEVYVFPAVTPHKVQALLLLLGECDIPSTVPSSA-FAQPQNIMSGGSASNGSK 134
           +LT+++ G+VYVF AV   KV A+L LLG     +  P     AQ QN M      +   
Sbjct: 83  QLTISFRGQVYVFDAVGADKVDAVLSLLGGSTELAPGPQVMELAQQQNHMPVVEYQSRCS 142

Query: 135 LSQRIASLVRFREKRKERSFEKKIRYSCRKEVAQRMQRKNGQFTSSKATFNIASANSNPS 194
           L QR  SL RFR+KR  R FEKK+RY  R+EVA RM R  GQFTSSK T    + NS   
Sbjct: 143 LPQRAQSLDRFRKKRNARCFEKKVRYGVRQEVALRMARNKGQFTSSKMT--DGAYNSGTD 200

Query: 195 NGSAPPESVSRI-CQHCGISEKLTPAMRRGPAGPRTLCNACGLMWANKGTLRDLTK 249
             SA  ++   I C HCGIS K TP MRRGP+GPRTLCNACGL WAN+GTLRDL+K
Sbjct: 201 QDSAQDDAHPEISCTHCGISSKCTPMMRRGPSGPRTLCNACGLFWANRGTLRDLSK 256

Transcriptional activator that specifically binds 5'-GATA-3' or 5'-GAT-3' motifs within gene promoters.

Arabidopsis thaliana (taxid: 3702)

>sp|Q93WK5|APRR7_ARATH Two-component response regulator-like APRR7 OS=Arabidopsis thaliana GN=APRR7 PE=2 SV=1

 Score = 57.8 bits (138), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 26/50 (52%), Positives = 36/50 (72%)

Query: 133 SKLSQRIASLVRFREKRKERSFEKKIRYSCRKEVAQRMQRKNGQFTSSKA 182
           +K+SQR A+L +FR+KRKER F KK+RY  RK++A++  R  GQF    A
Sbjct: 664 NKISQREAALTKFRQKRKERCFRKKVRYQSRKKLAEQRPRVRGQFVRKTA 713

Controls photoperiodic flowering response. Seems to be one of the component of the circadian clock. Expression of several members of the ARR-like family is controlled by circadian rhythm. The particular coordinated sequential expression of APRR9, APRR7, APRR5, APRR3 and APPR1 result to circadian waves that may be at the basis of the endogenous circadian clock.

Arabidopsis thaliana (taxid: 3702)

>sp|A2YQ93|PRR37_ORYSI Two-component response regulator-like PRR37 OS=Oryza sativa subsp. indica GN=PRR37 PE=2 SV=2

 Score = 53.9 bits (128), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 21/42 (50%), Positives = 32/42 (76%)

Query: 137 QRIASLVRFREKRKERSFEKKIRYSCRKEVAQRMQRKNGQFT 178
            R+A++++FR+KRKER+F KK+RY  RK +A++  R  GQF 
Sbjct: 681 HRVAAVIKFRQKRKERNFGKKVRYQSRKRLAEQRPRVRGQFV 722

Controls photoperiodic flowering response. Seems to be one of the component of the circadian clock. Expression of several members of the ARR-like family is controlled by circadian rhythm. The particular coordinated sequential expression of PRR73, PRR37, PRR95, PRR59 and PPR1 result to circadian waves that may be at the basis of the endogenous circadian clock.

Oryza sativa subsp. indica (taxid: 39946)

>sp|Q0D3B6|PRR37_ORYSJ Two-component response regulator-like PRR37 OS=Oryza sativa subsp. japonica GN=PRR37 PE=2 SV=1

 Score = 53.9 bits (128), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 21/42 (50%), Positives = 32/42 (76%)

Query: 137 QRIASLVRFREKRKERSFEKKIRYSCRKEVAQRMQRKNGQFT 178
            R+A++++FR+KRKER+F KK+RY  RK +A++  R  GQF 
Sbjct: 681 HRVAAVIKFRQKRKERNFGKKVRYQSRKRLAEQRPRVRGQFV 722

Controls photoperiodic flowering response. Seems to be one of the component of the circadian clock. Expression of several members of the ARR-like family is controlled by circadian rhythm. The particular coordinated sequential expression of PRR73, PRR37, PRR95, PRR59 and PPR1 result to circadian waves that may be at the basis of the endogenous circadian clock.

Oryza sativa subsp. japonica (taxid: 39947)

>sp|Q550D5|GTAA_DICDI Transcription factor stalky OS=Dictyostelium discoideum GN=stkA PE=1 SV=1

 Score = 53.5 bits (127), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 23/43 (53%), Positives = 28/43 (65%), Gaps = 2/43 (4%)

Query: 200 PESVSRICQHCGISEKLTPAMRRGPAGPRTLCNACGLMWANKG 242
           P S  R C+ CG S+  TP  RRGP+G  +LCNACG+ W  KG
Sbjct: 287 PMSAPRSCEFCGSSQ--TPTWRRGPSGKGSLCNACGIKWRLKG 327

Probable transcription factor. Seems to act on the expression of the genes culC, culD, rnpA and sigB.

Dictyostelium discoideum (taxid: 44689)

>sp|Q55C49|GTAG_DICDI GATA zinc finger domain-containing protein 7 OS=Dictyostelium discoideum GN=gtaG PE=4 SV=1

 Score = 53.1 bits (126), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 22/35 (62%), Positives = 25/35 (71%), Gaps = 2/35 (5%)

Query: 207 CQHCGISEKLTPAMRRGPAGPRTLCNACGLMWANK 241
           C +CG   K TP  RRGP+GP TLCNACGL +A K
Sbjct: 842 CHNCGT--KNTPEWRRGPSGPATLCNACGLAYAKK 874

Dictyostelium discoideum (taxid: 44689)

>sp|Q9LKL2|APRR1_ARATH Two-component response regulator-like APRR1 OS=Arabidopsis thaliana GN=APRR1 PE=1 SV=1

 Score = 53.1 bits (126), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 24/54 (44%), Positives = 34/54 (62%)

Query: 133 SKLSQRIASLVRFREKRKERSFEKKIRYSCRKEVAQRMQRKNGQFTSSKATFNI 186
           +KL +R  +L++FR KR +R F+KKIRY  RK +A+R  R  GQF       N+
Sbjct: 528 NKLDRREEALLKFRRKRNQRCFDKKIRYVNRKRLAERRPRVKGQFVRKMNGVNV 581

Controls photoperiodic flowering response. Component of the circadian clock. Expression of several members of the ARR-like family is controlled by circadian rhythm. The particular coordinated sequential expression of APRR9, APRR7, APRR5, APRR3 and APPR1 result to circadian waves that may be at the basis of the endogenous circadian clock. Positive regulator of CCA1 and LHY expression.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9LVG4|APRR3_ARATH Two-component response regulator-like APRR3 OS=Arabidopsis thaliana GN=APRR3 PE=1 SV=1

 Score = 52.8 bits (125), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 24/49 (48%), Positives = 35/49 (71%)

Query: 129 ASNGSKLSQRIASLVRFREKRKERSFEKKIRYSCRKEVAQRMQRKNGQF 177
           +S   + +QR A+L++FR KRKER FEKK+RY  RK++A++     GQF
Sbjct: 433 SSGSDRWAQREAALMKFRLKRKERCFEKKVRYHSRKKLAEQRPHVKGQF 481

Controls photoperiodic flowering response. Component of the circadian clock. Controls the degradation of APRR1/TOC1 by the SCF(ZTL) complex. Expression of several members of the ARR-like family is controlled by circadian rhythm. The particular coordinated sequential expression of APRR9, APRR7, APRR5, APRR3 and APPR1 result to circadian waves that may be at the basis of the endogenous circadian clock.

Arabidopsis thaliana (taxid: 3702)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	365
359494710	371	PREDICTED: GATA transcription factor 28-	0.972	0.956	0.567	1e-102
224141135	368	predicted protein [Populus trichocarpa]	0.797	0.790	0.614	7e-95
356519473	1174	PREDICTED: dynamin-related protein 3A-li	0.8	0.248	0.591	4e-94
356528009	358	PREDICTED: GATA transcription factor 24-	0.810	0.826	0.577	1e-93
357476233	334	GATA transcription factor [Medicago trun	0.775	0.847	0.566	6e-82
359492959	368	PREDICTED: GATA transcription factor 24-	0.923	0.915	0.491	2e-81
255563366	313	hypothetical protein RCOM_0886650 [Ricin	0.638	0.744	0.661	3e-81
255572874	327	GATA transcription factor, putative [Ric	0.882	0.984	0.515	4e-80
302142082	324	unnamed protein product [Vitis vinifera]	0.830	0.935	0.521	5e-77
356508042	350	PREDICTED: GATA transcription factor 24-	0.852	0.888	0.517	4e-73

>gi|359494710|ref|XP_002268872.2| PREDICTED: GATA transcription factor 28-like [Vitis vinifera]

 Score =  379 bits (973), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 206/363 (56%), Positives = 249/363 (68%), Gaps = 8/363 (2%)

Query: 1   MFAMNPQPLQARPYIDTEEHDVAQTPIPIQ-NGSKQGDRYDEPEEVEDEAGASSVNRKSN 59
           M  +NP+PLQA P+   EEHD     +PI+ NG++ G   ++      EA +     + +
Sbjct: 1   METVNPRPLQALPF---EEHDDDSMQVPIEINGNEGGFEVEDVTGGGGEAVSGGEGGRMS 57

Query: 60  DRGGSSVQSSTSTRTSELTVAYEGEVYVFPAVTPHKVQALLLLLGECDIPSTVPSSAFAQ 119
                   S  + RTSELT+++EGEVYVF AVTP KVQA+LLLLG  + PS+V SS F  
Sbjct: 58  SVNADEKSSVVAQRTSELTISFEGEVYVFHAVTPDKVQAVLLLLGGHETPSSVSSSEFLL 117

Query: 120 PQNIMSGGSASNGSKLSQRIASLVRFREKRKERSFEKKIRYSCRKEVAQRMQRKNGQFTS 179
            QN+     AS  S L +RIASL+RFREKRKER FEKKIRY+CRKEVAQRM RKNGQF S
Sbjct: 118 QQNMKGLVDASKCSNLPRRIASLIRFREKRKERCFEKKIRYTCRKEVAQRMHRKNGQFAS 177

Query: 180 SKATFNIASANSNPSNGSAPPESVSRICQHCGISEKLTPAMRRGPAGPRTLCNACGLMWA 239
            K +F +A+ N +PS+G+  PE V R CQHCGISEK TPAMRRGPAGPR+LCNACGLMWA
Sbjct: 178 VKESFKMATGNWDPSSGTPCPEYVFRRCQHCGISEKSTPAMRRGPAGPRSLCNACGLMWA 237

Query: 240 NKGTLRDLTKGARNICFEQHELETSSDIKPATTEAENSYANQDEQGSPHETKPAPLDPQN 299
           NKGTLRDL+KG+R I F Q ELETS DIKP T E E +Y N DE GS  E KP PL+  N
Sbjct: 238 NKGTLRDLSKGSRMIPFGQDELETSDDIKPVTMEREKAYGNHDELGSSEEMKPVPLESGN 297

Query: 300 HSM-RSNEQYLLESDDGFACPLPIQEDNSLMNLDDEDLQEAMDELANASGSDFEIPSNFD 358
            +  + NEQ LLE+       LP+  DNS +N D+   QE  + LAN SG+DFEIP+NFD
Sbjct: 298 PTTGQQNEQDLLETAVALVDHLPVPVDNSSINPDE---QENTEVLANVSGTDFEIPTNFD 354

Query: 359 EQV 361
           EQV
Sbjct: 355 EQV 357

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224141135|ref|XP_002323930.1| predicted protein [Populus trichocarpa] gi|222866932|gb|EEF04063.1| predicted protein [Populus trichocarpa]

 Score =  353 bits (906), Expect = 7e-95,   Method: Compositional matrix adjust.
 Identities = 180/293 (61%), Positives = 216/293 (73%), Gaps = 2/293 (0%)

Query: 71  STRTSELTVAYEGEVYVFPAVTPHKVQALLLLLGECDIPSTVPSSAFAQPQNIMSGGSAS 130
           +TRTSELT+A+EGEVYVFPAVTP KVQA+L LLGE +  +  P+S F   QN  S G AS
Sbjct: 77  TTRTSELTIAFEGEVYVFPAVTPSKVQAVLFLLGEPETSTIAPNSDFFLQQNARSAGDAS 136

Query: 131 NGSKLSQRIASLVRFREKRKERSFEKKIRYSCRKEVAQRMQRKNGQFTSSKATFNIASAN 190
            G K S+RIASL RFREKRKER FEKK+RY+CRKEVAQRM RK GQF SS   ++  + N
Sbjct: 137 QGLKFSRRIASLERFREKRKERCFEKKVRYTCRKEVAQRMHRKKGQFASSNDCYSTDTGN 196

Query: 191 SNPSNGSAPPESVSRICQHCGISEKLTPAMRRGPAGPRTLCNACGLMWANKGTLRDLTKG 250
             PSN    PESV   CQHCGIS K TPAMRRGPAGPRTLCNACGLMWANKGTLRDL+KG
Sbjct: 197 WEPSNSMPNPESVLLRCQHCGISAKDTPAMRRGPAGPRTLCNACGLMWANKGTLRDLSKG 256

Query: 251 ARNICFEQHELETSSDIKPATTEAENSYANQDEQGSPHETKPAPLDPQNHSMRSNEQYLL 310
            R+I F Q+E   + D KP   E EN +AN +E+ S  E+KP PL+ +N S+R NEQ +L
Sbjct: 257 GRHISFNQNE-PVTPDFKPLNMELENPFANPEEEESQEESKPVPLESEN-SIRPNEQDML 314

Query: 311 ESDDGFACPLPIQEDNSLMNLDDEDLQEAMDELANASGSDFEIPSNFDEQVFI 363
           E+D     PLP+  +NS +NLDDED +  +DEL + SGS+FEIP +FD+QV +
Sbjct: 315 ETDKNVPDPLPMHVENSSVNLDDEDFENTLDELGDVSGSEFEIPEHFDDQVVV 367

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356519473|ref|XP_003528397.1| PREDICTED: dynamin-related protein 3A-like [Glycine max]

 Score =  351 bits (900), Expect = 4e-94,   Method: Compositional matrix adjust.
 Identities = 177/299 (59%), Positives = 224/299 (74%), Gaps = 7/299 (2%)

Query: 68  SSTSTRTSELTVAYEGEVYVFPAVTPHKVQALLLLLGECDIPSTVPSSAFAQPQN---IM 124
           S+   R SELT+++EGEVYVFPAVTP KVQA+LLLLG  ++ ++ P+S     QN   I 
Sbjct: 51  SAMHARASELTISFEGEVYVFPAVTPEKVQAVLLLLGAQEMTNSAPTSDILLQQNYQDIR 110

Query: 125 SGGSASNGSKLSQRIASLVRFREKRKERSFEKKIRYSCRKEVAQRMQRKNGQFTSSKATF 184
                S  SKLS+R ASLVRFREKRKER FEKKIRYSCRKEVAQRM RKNGQF S K  +
Sbjct: 111 EINDPSRSSKLSRRFASLVRFREKRKERCFEKKIRYSCRKEVAQRMHRKNGQFASMKEDY 170

Query: 185 NIASANSNPSNGSAPPESVSRICQHCGISEKLTPAMRRGPAGPRTLCNACGLMWANKGTL 244
              + N + SNG+  PES  R CQHCGISEK TPAMRRGPAGPR+LCNACGLMWANKGTL
Sbjct: 171 KSPAENWDSSNGTPCPESTERRCQHCGISEKSTPAMRRGPAGPRSLCNACGLMWANKGTL 230

Query: 245 RDLTKGARNICFEQHELETSSDIKPATTEAENSYANQDEQGSPHETKPAPLDPQNHSMRS 304
           RDL+K AR I FEQ+EL+TS+DIKP+TTEAE+S+A QD++GSP ETKP  +D      ++
Sbjct: 231 RDLSKAAR-IAFEQNELDTSADIKPSTTEAEHSFAKQDKEGSPEETKPVQMDSSRSPEKT 289

Query: 305 NEQYLLESDDGFACPLPIQEDNSLMNLDDEDLQEAMDELANASGSDFEIPSNFDEQVFI 363
           N+Q+++ + +     L IQ +N  ++L ++D    +++LA+ASG++FEIP+ FD+QV I
Sbjct: 290 NDQFIIGTAESVTDNLSIQVENHALSLHEQD---TLEDLADASGTEFEIPAGFDDQVDI 345

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356528009|ref|XP_003532598.1| PREDICTED: GATA transcription factor 24-like [Glycine max]

 Score =  349 bits (895), Expect = 1e-93,   Method: Compositional matrix adjust.
 Identities = 175/303 (57%), Positives = 226/303 (74%), Gaps = 7/303 (2%)

Query: 64  SSVQSSTSTRTSELTVAYEGEVYVFPAVTPHKVQALLLLLGECDIPSTVPSSAFAQPQN- 122
           ++  S+   R SELT+++EGEVYVFPAVTP KVQA+LLLLG  ++P++ P+S F   QN 
Sbjct: 50  ANASSAMRARASELTISFEGEVYVFPAVTPEKVQAVLLLLGAQEMPNSAPTSDFLLQQNY 109

Query: 123 --IMSGGSASNGSKLSQRIASLVRFREKRKERSFEKKIRYSCRKEVAQRMQRKNGQFTSS 180
             I      S  SKLS+R ASLVRFREKRKER FEKKIRYSCRKEVAQRM RKNGQF S 
Sbjct: 110 QDIREINDPSRSSKLSRRFASLVRFREKRKERCFEKKIRYSCRKEVAQRMHRKNGQFASL 169

Query: 181 KATFNIASANSNPSNGSAPPESVSRICQHCGISEKLTPAMRRGPAGPRTLCNACGLMWAN 240
           K  +   + N + SNG+  P+S  R CQHCGISEK TPAMRRGPAGPR+LCNACGLMWAN
Sbjct: 170 KEDYKSPAENWDSSNGTPCPDSTERRCQHCGISEKSTPAMRRGPAGPRSLCNACGLMWAN 229

Query: 241 KGTLRDLTKGARNICFEQHELETSSDIKPATTEAENSYANQDEQGSPHETKPAPLDPQNH 300
           KGTLRDL+K  R I FEQ+EL+TS+DIKP+TTEA++SYA Q ++GSP ETKP  +D +  
Sbjct: 230 KGTLRDLSKAGR-IAFEQNELDTSADIKPSTTEAKHSYAKQGKEGSPEETKPVQMDSRRS 288

Query: 301 SMRSNEQYLLESDDGFACPLPIQEDNSLMNLDDEDLQEAMDELANASGSDFEIPSNFDEQ 360
             ++NEQ+++ + +     L ++ +N  + L ++D    +++LA+ASG++FEIP+ FD+Q
Sbjct: 289 PEKTNEQFIIGTAESVTNNLSVRLENHALILHEQD---TLEDLADASGTEFEIPAGFDDQ 345

Query: 361 VFI 363
           V I
Sbjct: 346 VDI 348

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357476233|ref|XP_003608402.1| GATA transcription factor [Medicago truncatula] gi|355509457|gb|AES90599.1| GATA transcription factor [Medicago truncatula]

 Score =  310 bits (795), Expect = 6e-82,   Method: Compositional matrix adjust.
 Identities = 167/295 (56%), Positives = 206/295 (69%), Gaps = 12/295 (4%)

Query: 72  TRTSELTVAYEGEVYVFPAVTPHKVQALLLLLGECDIPSTVPSSAFAQPQN---IMSGGS 128
           +R SELT+++EGEVYVFP+VTP KVQA+LLLL   +  ++VP+S F   QN   I     
Sbjct: 39  SRASELTISFEGEVYVFPSVTPEKVQAVLLLLDGKETRNSVPTSDFPVQQNCRDIWGKND 98

Query: 129 ASNGSKLSQRIASLVRFREKRKERSFEKKIRYSCRKEVAQRMQRKNGQFTSSKATFNIAS 188
               SK+S+R ASLVRFREKRKER FEKKIRY+CRKEVA+RMQRKNGQF S K   +  +
Sbjct: 99  PFRNSKVSRRSASLVRFREKRKERCFEKKIRYTCRKEVAERMQRKNGQFASLKEECSSPA 158

Query: 189 ANSNPSNGSAPPESVSRICQHCGISEKLTPAMRRGPAGPRTLCNACGLMWANKGTLRDLT 248
            N + SNGS  PES+ R CQHCGI+ K TP MRRGPAGPRTLCNACGLMWANKGTLRDL 
Sbjct: 159 ENQDFSNGSPFPESIERRCQHCGIAAKSTPVMRRGPAGPRTLCNACGLMWANKGTLRDLG 218

Query: 249 KGARNICFEQHELETSSDIKPATTEAENSYANQDEQGSPHETKPAPLDPQNHSMRSNEQY 308
           K  R I FEQ EL+ S      TT+ ENS A QD++ SPH TKP P+D +       EQY
Sbjct: 219 KAGR-IAFEQTELDFS------TTDPENSCAAQDKKESPHATKPLPMDARQSPEMIIEQY 271

Query: 309 LLESDDGFACPLPIQEDNSLMNLDDEDLQEAMDELANASGSDFEIPSNFDEQVFI 363
           +LE+ +     L IQ +N+ ++L ++D    M +  +ASG++FEIP  FD+QV I
Sbjct: 272 MLEAAEAVTDNLSIQVENNALDLHEQD--NTMADFVDASGTEFEIPLCFDDQVNI 324

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359492959|ref|XP_002283738.2| PREDICTED: GATA transcription factor 24-like [Vitis vinifera]

 Score =  309 bits (791), Expect = 2e-81,   Method: Compositional matrix adjust.
 Identities = 191/389 (49%), Positives = 234/389 (60%), Gaps = 52/389 (13%)

Query: 1   MFAMNPQPLQARPYIDTEEHDVAQTPIPIQNGSKQGDRYDEPEEVEDEAGASSVNRKSN- 59
           M   NPQPLQARP+   E+H   Q PI I         +D+  + E + GAS+    +  
Sbjct: 1   MAMANPQPLQARPF---EDH--MQIPIQI---------HDDDADFEVDGGASAPADDAMD 46

Query: 60  --------------DRGGSSVQSSTSTRTSELTVAYEGEVYVFPAVTPHKVQALLLLLGE 105
                         D  G  V S    RTSELT+A+EGEVYVFPAVTP KVQA+LLLLG 
Sbjct: 47  DVDDDPHINSINPIDHAGVVVAS----RTSELTLAFEGEVYVFPAVTPEKVQAVLLLLGG 102

Query: 106 CDIPSTVPSSAFAQPQNIMSGGSASNGSKLSQRIASLVRFREKRKERSFEKKIRYSCRKE 165
            DIP+ VP+      Q+    G     S LS+RIASLVRFREKRKER F+KKIRY+ RKE
Sbjct: 103 RDIPTGVPTIEVPFDQSNRGVGDLPKRSNLSRRIASLVRFREKRKERCFDKKIRYTVRKE 162

Query: 166 VAQRMQRKNGQFTSSKAT---FNIASANSNPSNGSAPPESVSRICQHCGISEKLTPAMRR 222
           VAQRM RKNGQF S K +    N  SA S   + +  PE+V R CQHCG+SE  TPAMRR
Sbjct: 163 VAQRMHRKNGQFASLKESSGPSNWDSAQSLQGDTTPRPETVLRRCQHCGVSENSTPAMRR 222

Query: 223 GPAGPRTLCNACGLMWANKGTLRDLTKGARNICFEQHELETSSDIKPATTEAENSYANQD 282
           GPAGPRTLCNACGLMWANKGTLRDL+KG RN+  +Q EL T  D+KP+  E EN   +QD
Sbjct: 223 GPAGPRTLCNACGLMWANKGTLRDLSKGGRNLSLDQIELGTPIDVKPSIMEGENFSGSQD 282

Query: 283 EQGSPHE-TKPAPLDPQNHSMRSNEQY------------LLESDDGFACPLPIQEDNSLM 329
           E  +P + +K       N S+ ++E+             L E+ D  +  LP+   +S  
Sbjct: 283 EHITPEDPSKAVAERTDNPSVNADEEVMSSGVYPSSFTDLHETADDLSHTLPMGIVHSSG 342

Query: 330 NLDDEDLQEAMDELANASGSDFEIPSNFD 358
           NLDD   QE + ELANAS ++ +IP NFD
Sbjct: 343 NLDD---QETLVELANASETEMDIPGNFD 368

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255563366|ref|XP_002522686.1| hypothetical protein RCOM_0886650 [Ricinus communis] gi|223538162|gb|EEF39773.1| hypothetical protein RCOM_0886650 [Ricinus communis]

 Score =  308 bits (789), Expect = 3e-81,   Method: Compositional matrix adjust.
 Identities = 156/236 (66%), Positives = 179/236 (75%), Gaps = 3/236 (1%)

Query: 129 ASNGSKLSQRIASLVRFREKRKERSFEKKIRYSCRKEVAQRMQRKNGQFTSSKATFNIAS 188
            S  SKLS+RIASLVRFREKRKER FEKKIRY+CRKEVAQRM RKNGQF S K  ++  +
Sbjct: 68  TSRESKLSRRIASLVRFREKRKERCFEKKIRYTCRKEVAQRMHRKNGQFASLKDCYSTGT 127

Query: 189 -ANSNPSNGSAPPESVSRICQHCGISEKLTPAMRRGPAGPRTLCNACGLMWANKGTLRDL 247
            +N  PSN +   E +   CQHCG SE  TPAMRRGPAGPRTLCNACGLMWANKGTLRDL
Sbjct: 128 GSNWEPSNTTPQSEPILHRCQHCGTSENATPAMRRGPAGPRTLCNACGLMWANKGTLRDL 187

Query: 248 TKGARNICFEQHELETSSDIKPATTEAENSYANQDEQGSPHETKPAPLDPQNHSMRSNEQ 307
           TKG R++ F+Q+EL T  D KP+T E EN Y NQDE+GSP E+KP  LD +N SMR N+Q
Sbjct: 188 TKGGRHVSFDQNELGT-PDFKPSTMEQENPYVNQDEEGSPEESKPVLLDSEN-SMRPNDQ 245

Query: 308 YLLESDDGFACPLPIQEDNSLMNLDDEDLQEAMDELANASGSDFEIPSNFDEQVFI 363
            LLE+DD    PLP   +NS +NLDDED QE +D L N SGS+FEIP NFD+QV I
Sbjct: 246 DLLETDDTVTDPLPTHVENSSVNLDDEDFQETLDGLGNVSGSEFEIPGNFDDQVDI 301

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255572874|ref|XP_002527369.1| GATA transcription factor, putative [Ricinus communis] gi|223533288|gb|EEF35041.1| GATA transcription factor, putative [Ricinus communis]

 Score =  304 bits (779), Expect = 4e-80,   Method: Compositional matrix adjust.
 Identities = 187/363 (51%), Positives = 227/363 (62%), Gaps = 41/363 (11%)

Query: 1   MFAMNPQPLQARPYIDTEEHDVAQTPIPIQNGS-KQGDRYDEPEEVEDEAGASS-VNRKS 58
           M A NP PLQARPY   E+H   Q PI I +   ++ +  D  ++VED    +S VN   
Sbjct: 1   MAAANPLPLQARPY---EDH--VQAPIQIDDDDVREYEDGDAMDDVEDNTPMNSGVNVAE 55

Query: 59  NDRGGSSVQSSTSTRTSELTVAYEGEVYVFPAVTPHKVQALLLLLGECDIPSTVPSSAFA 118
           +  GG  V S    RTSELT+++EGEV+VFPAVTP KVQA+LLLLG  DIP+ VP+    
Sbjct: 56  HGGGGVIVAS----RTSELTLSFEGEVFVFPAVTPEKVQAVLLLLGGRDIPTAVPTIEVP 111

Query: 119 QPQNIMSGGSASNGSKLSQRIASLVRFREKRKERSFEKKIRYSCRKEVAQRMQRKNGQFT 178
             QN          S LS+RIASLVRFREKRKER F+KKIRY+ RKEVAQRM RKNGQF 
Sbjct: 112 CVQNNRGVDDTPKRSNLSRRIASLVRFREKRKERCFDKKIRYTVRKEVAQRMHRKNGQFA 171

Query: 179 SSKATFNIASANSNPS---NGSAPPESVSRICQHCGISEKLTPAMRRGPAGPRTLCNACG 235
           S K +   +S +S  S   +G+  PE+V R CQHCG+SE  TPAMRRGPAGPRTLCNACG
Sbjct: 172 SLKESSGGSSWDSAQSCLQDGTPRPETVVRRCQHCGVSENNTPAMRRGPAGPRTLCNACG 231

Query: 236 LMWANKGTLRDLTKGARNICFEQHELETSSDIKPATTEAENSYANQDEQGSPHETKPAPL 295
           LMWANKGTLRDL+KG RN   +Q E ET  D+KP+  E E S  NQD             
Sbjct: 232 LMWANKGTLRDLSKGGRNASTDQIEPETPIDVKPSIMEGEFS-GNQD------------- 277

Query: 296 DPQNHSMRSNEQYLLESDDGFACPLPIQEDNSLMNLDDEDLQEAMDELANASGSDFEIPS 355
                     E  L E+ +     LP++  +S  + DD+D QE + ELAN S +D +IPS
Sbjct: 278 ----------EHVLQEASEDLTSTLPMRVVHS--SADDDD-QEPLVELANPSDADLDIPS 324

Query: 356 NFD 358
           NFD
Sbjct: 325 NFD 327

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|302142082|emb|CBI19285.3| unnamed protein product [Vitis vinifera]

 Score =  294 bits (752), Expect = 5e-77,   Method: Compositional matrix adjust.
 Identities = 171/328 (52%), Positives = 212/328 (64%), Gaps = 25/328 (7%)

Query: 43  EEVEDEAGASSVNRKSNDRGGSSVQSSTSTRTSELTVAYEGEVYVFPAVTPHKVQALLLL 102
           ++V+D+   +S+N    D  G  V S    RTSELT+A+EGEVYVFPAVTP KVQA+LLL
Sbjct: 2   DDVDDDPHINSIN--PIDHAGVVVAS----RTSELTLAFEGEVYVFPAVTPEKVQAVLLL 55

Query: 103 LGECDIPSTVPSSAFAQPQNIMSGGSASNGSKLSQRIASLVRFREKRKERSFEKKIRYSC 162
           LG  DIP+ VP+      Q+    G     S LS+RIASLVRFREKRKER F+KKIRY+ 
Sbjct: 56  LGGRDIPTGVPTIEVPFDQSNRGVGDLPKRSNLSRRIASLVRFREKRKERCFDKKIRYTV 115

Query: 163 RKEVAQRMQRKNGQFTSSKAT---FNIASANSNPSNGSAPPESVSRICQHCGISEKLTPA 219
           RKEVAQRM RKNGQF S K +    N  SA S   + +  PE+V R CQHCG+SE  TPA
Sbjct: 116 RKEVAQRMHRKNGQFASLKESSGPSNWDSAQSLQGDTTPRPETVLRRCQHCGVSENSTPA 175

Query: 220 MRRGPAGPRTLCNACGLMWANKGTLRDLTKGARNICFEQHELETSSDIKPATTEAENSYA 279
           MRRGPAGPRTLCNACGLMWANKGTLRDL+KG RN+  +Q EL T  D+KP+  E EN   
Sbjct: 176 MRRGPAGPRTLCNACGLMWANKGTLRDLSKGGRNLSLDQIELGTPIDVKPSIMEGENFSG 235

Query: 280 NQDEQGSPHE-TKPAPLDPQNHSMRSNEQY------------LLESDDGFACPLPIQEDN 326
           +QDE  +P + +K       N S+ ++E+             L E+ D  +  LP+   +
Sbjct: 236 SQDEHITPEDPSKAVAERTDNPSVNADEEVMSSGVYPSSFTDLHETADDLSHTLPMGIVH 295

Query: 327 SLMNLDDEDLQEAMDELANASGSDFEIP 354
           S  NLDD   QE + ELANAS ++ +IP
Sbjct: 296 SSGNLDD---QETLVELANASETEMDIP 320

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356508042|ref|XP_003522771.1| PREDICTED: GATA transcription factor 24-like isoform 1 [Glycine max]

 Score =  281 bits (719), Expect = 4e-73,   Method: Compositional matrix adjust.
 Identities = 166/321 (51%), Positives = 208/321 (64%), Gaps = 10/321 (3%)

Query: 43  EEVEDEAGASSVNRKSNDRGGSSVQSSTSTRTSELTVAYEGEVYVFPAVTPHKVQALLLL 102
           +E+ED A  +SVN  +          +  +RTSELT+++EGEVYVFPAVTP KVQA+LLL
Sbjct: 35  DELED-ANVNSVNVTNAASVNHEAVVAMPSRTSELTLSFEGEVYVFPAVTPQKVQAVLLL 93

Query: 103 LGECDIPSTVPSSAFAQPQNIMSGGSASNGSKLSQRIASLVRFREKRKERSFEKKIRYSC 162
           LG  D+ + VP+      Q+    G     S LS+RIASLVRFREKRKER F+KKIRYS 
Sbjct: 94  LGGRDVQAGVPAVEPPFDQSNRDMGDTPKRSNLSRRIASLVRFREKRKERCFDKKIRYSV 153

Query: 163 RKEVAQRMQRKNGQFTSSK---ATFNIASANSNPSNGSAPPESVSRICQHCGISEKLTPA 219
           RKEVAQRM RKNGQF S K    + N  SA S+   G++  ESV R C HCG+ E  TPA
Sbjct: 154 RKEVAQRMHRKNGQFASLKESPGSSNWDSAQSSGQVGTSHSESVRR-CHHCGVGENNTPA 212

Query: 220 MRRGPAGPRTLCNACGLMWANKGTLRDLTKGARNICFEQHELETSSDIKPATTEAENSYA 279
           MRRGPAGPRTLCNACGLMWANKGTLRDL+KG RN+  EQ +L+T  D+KP +        
Sbjct: 213 MRRGPAGPRTLCNACGLMWANKGTLRDLSKGGRNLSVEQSDLDTPIDVKPTSVLEGELPG 272

Query: 280 NQDEQGSPHE-TKPAPLD-PQNHSMRSNEQYLLESDDGFACPLPIQEDNSLMNLDDEDLQ 337
             DEQGS  + +K    D   NH++  +++ L E+ + F   LP+   +S  N D E  Q
Sbjct: 273 IHDEQGSSEDPSKSNAADGSSNHAVNPSDEELPETAEHFTNVLPLGIGHSSTN-DSE--Q 329

Query: 338 EAMDELANASGSDFEIPSNFD 358
           E + EL+N S +D +IP NFD
Sbjct: 330 EPLVELSNPSDTDIDIPGNFD 350

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	365
TAIR|locus:505006360	297	ZML1 "ZIM-like 1" [Arabidopsis	0.473	0.582	0.483	1.1e-40
TAIR|locus:2017582	302	ZML2 "ZIM-LIKE 2" [Arabidopsis	0.526	0.635	0.437	1.2e-35
DICTYBASE|DDB_G0277147	872	stkA "GATA zinc finger domain-	0.331	0.138	0.290	1.4e-06
TAIR|locus:2076191	274	GATA1 "GATA transcription fact	0.210	0.281	0.421	1.8e-06
TAIR|locus:2155919	139	GATA16 "GATA transcription fac	0.219	0.575	0.322	1.4e-05
DICTYBASE|DDB_G0285139	640	gtaL "GATA zinc finger domain-	0.336	0.192	0.283	5.4e-05
TAIR|locus:2139594	269	GATA3 "GATA transcription fact	0.230	0.312	0.351	0.00035
TAIR|locus:504955441	197	AT4G16141 [Arabidopsis thalian	0.273	0.507	0.295	0.00053
DICTYBASE|DDB_G0270756	1006	gtaG "GATA zinc finger domain-	0.263	0.095	0.307	0.00074
TAIR|locus:2103346	240	GATA4 "GATA transcription fact	0.090	0.137	0.6	0.00076

TAIR|locus:505006360 ZML1 "ZIM-like 1" [Arabidopsis thaliana (taxid:3702)]

 Score = 401 (146.2 bits), Expect = 1.1e-40, Sum P(2) = 1.1e-40
 Identities = 89/184 (48%), Positives = 114/184 (61%)

Query:    76 ELTVAYEGEVYVFPAVTPHKVQALLLLLGECDIPSTVPSSAFAQPQNIMSGGSASNGSKL 135
             +LT++++G+VYVF  V+P KVQA+LLLLG  ++P T+P++  +  QN    G +    +L
Sbjct:    79 QLTLSFQGQVYVFDRVSPEKVQAVLLLLGGREVPHTLPTTLGSPHQNNRVLGLSGTPQRL 138

Query:   136 S--QRIASLVXXXXXXXXXXXXXXIRYSCRKEVAQRMQRKNGQFTSSKATFNIXXXXXXX 193
             S  QR+ASL+              IRY+ RKEVA RMQRK GQFTS+K++ N        
Sbjct:   139 SVPQRLASLLRFREKRKGRNFDKTIRYTVRKEVALRMQRKKGQFTSAKSS-NDDSGSTGS 197

Query:   194 XXXXXXXXXVSR--------ICQHCGISEKLTPAMRRGPAGPRTLCNACGLMWANKGTLR 245
                      V          +C+HCG SEK TP MRRGP GPRTLCNACGLMWANKGTLR
Sbjct:   198 DWGSNQSWAVEGTETQKPEVLCRHCGTSEKSTPMMRRGPDGPRTLCNACGLMWANKGTLR 257

Query:   246 DLTK 249
             DL+K
Sbjct:   258 DLSK 261

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=ISM

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

GO:0008270 "zinc ion binding" evidence=IEA

GO:0043565 "sequence-specific DNA binding" evidence=IEA

TAIR|locus:2017582 ZML2 "ZIM-LIKE 2" [Arabidopsis thaliana (taxid:3702)]

 Score = 385 (140.6 bits), Expect = 1.2e-35, P = 1.2e-35
 Identities = 91/208 (43%), Positives = 115/208 (55%)

Query:    76 ELTVAYEGEVYVFPAVTPHKVQALLLLLGECDIPSTVPSSAFAQPQN--IMSGGSASNGS 133
             +LT++++G+VYVF +V P KVQA+LLLLG  ++P   P    +  QN  + S        
Sbjct:    83 QLTLSFQGQVYVFDSVLPEKVQAVLLLLGGRELPQAAPPGLGSPHQNNRVSSLPGTPQRF 142

Query:   134 KLSQRIASLVXXXXXXXXXXXXXXIRYSCRKEVAQRMQRKNGQFTSSKATFNIXXXXXXX 193
              + QR+ASLV              IRY+ RKEVA RMQR  GQFTS+K+  +        
Sbjct:   143 SIPQRLASLVRFREKRKGRNFDKKIRYTVRKEVALRMQRNKGQFTSAKSNNDEAASAGSS 202

Query:   194 XXXXXXXXXVSR-------ICQHCGISEKLTPAMRRGPAGPRTLCNACGLMWANKGTLRD 246
                       S         C+HCGI EK TP MRRGPAGPRTLCNACGLMWANKG  RD
Sbjct:   203 WGSNQTWAIESSEAQHQEISCRHCGIGEKSTPMMRRGPAGPRTLCNACGLMWANKGAFRD 262

Query:   247 LTKG----ARNICFEQHE---LETSSDI 267
             L+K     A+N+   ++E   LET   I
Sbjct:   263 LSKASPQTAQNLPLNKNEDANLETDHQI 290

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=ISM

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

GO:0008270 "zinc ion binding" evidence=IEA

GO:0043565 "sequence-specific DNA binding" evidence=IEA

DICTYBASE|DDB_G0277147 stkA "GATA zinc finger domain-containing protein 1" [Dictyostelium discoideum (taxid:44689)]

 Score = 143 (55.4 bits), Expect = 1.4e-06, P = 1.4e-06
 Identities = 41/141 (29%), Positives = 68/141 (48%)

Query:   205 RICQHCGISEKLTPAMRRGPAGPRTLCNACGLMWANKGTLRD-LTKGARNICFEQHELET 263
             R C+ CG S+  TP  RRGP+G  +LCNACG+ W  KG  +D + K +      Q +   
Sbjct:   292 RSCEFCGSSQ--TPTWRRGPSGKGSLCNACGIKWRLKG--KDGIFKPS------QKQQNR 341

Query:   264 SSDIKPATTEAENSYANQDEQGSPHETKPAPLDPQNHSMRSNEQYLLESDDGFACPLPIQ 323
                I  A  + +    NQ +Q  P + +  P  PQ  + + N+Q  ++S        P Q
Sbjct:   342 QKPIMSAQKQPKQQQ-NQPQQQQPQQPQQ-PQQPQQQNQQQNQQQSIQSQ-------PQQ 392

Query:   324 EDNSLMNLDDEDLQEAMDELA 344
               N+ + L+ + + + +  L+
Sbjct:   393 RQNNHLILNQQTINQHLQMLS 413

GO:0045595 "regulation of cell differentiation" evidence=IMP

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA;IMP

GO:0005634 "nucleus" evidence=IEA;IDA

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA;IMP

GO:0043565 "sequence-specific DNA binding" evidence=IEA

GO:0008270 "zinc ion binding" evidence=IEA

GO:0046872 "metal ion binding" evidence=IEA

GO:0006351 "transcription, DNA-dependent" evidence=IEA

TAIR|locus:2076191 GATA1 "GATA transcription factor 1" [Arabidopsis thaliana (taxid:3702)]

 Score = 134 (52.2 bits), Expect = 1.8e-06, P = 1.8e-06
 Identities = 35/83 (42%), Positives = 46/83 (55%)

Query:   203 VSRICQHCGISEKLTPAMRRGPAGPRTLCNACGLMWANKGTLRDLTKGARNICFEQHELE 262
             + R CQHCG +EK TP  R GPAGP+TLCNACG+ + + G L    + A +  F   EL 
Sbjct:   192 MGRKCQHCG-AEK-TPQWRAGPAGPKTLCNACGVRYKS-GRLVPEYRPANSPTFTA-ELH 247

Query:   263 TSSDIKPATTEAENSYANQDEQG 285
             ++S  K    E    Y + D  G
Sbjct:   248 SNSHRK--IVEMRKQYQSGDGDG 268

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=ISM

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

GO:0008270 "zinc ion binding" evidence=IEA

GO:0043565 "sequence-specific DNA binding" evidence=IEA

GO:0044212 "transcription regulatory region DNA binding" evidence=IDA

GO:0007623 "circadian rhythm" evidence=IEP

TAIR|locus:2155919 GATA16 "GATA transcription factor 16" [Arabidopsis thaliana (taxid:3702)]

 Score = 108 (43.1 bits), Expect = 1.4e-05, P = 1.4e-05
 Identities = 30/93 (32%), Positives = 46/93 (49%)

Query:   205 RICQHCGISEKLTPAMRRGPAGPRTLCNACGLMWANK---GT-----LRDLTKGARNICF 256
             + C  CG S+  TP  R GP GP++LCNACG+    K   GT     L+  + G  N  F
Sbjct:    36 KTCADCGTSK--TPLWRGGPVGPKSLCNACGIRNRKKRRGGTEDNKKLKKSSSGGGNRKF 93

Query:   257 EQHELETSSDI---KPATTEAENSYANQDEQGS 286
              +   ++  D+   K +T E +     ++EQ +
Sbjct:    94 GESLKQSLMDLGIRKRSTVEKQRQKLGEEEQAA 126

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=ISM

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

GO:0008270 "zinc ion binding" evidence=IEA

GO:0043565 "sequence-specific DNA binding" evidence=IEA

DICTYBASE|DDB_G0285139 gtaL "GATA zinc finger domain-containing protein 12" [Dictyostelium discoideum (taxid:44689)]

 Score = 127 (49.8 bits), Expect = 5.4e-05, P = 5.4e-05
 Identities = 40/141 (28%), Positives = 68/141 (48%)

Query:   203 VSRICQHCGISEKLTPAMRRGPAGPRTLCNACGLMW---------ANKGTLRDLTKGARN 253
             +SR+C +C  S+  TP  RRGP G +TLCNACG+ +         +N  + R+ +     
Sbjct:   502 ISRVCVNCKTSD--TPEWRRGPQGAKTLCNACGIRYRLQQQQVPQSNLNSPRE-SYAVIP 558

Query:   254 ICFEQHELETS----SDIKPATTEAENSYANQDEQGSPHETKPAPLDPQNHSMRSNEQYL 309
              C E  + +TS    ++I  +TT    +   Q +Q  P +  P P+      +  ++Q L
Sbjct:   559 TCDENIKQQTSQNSTTNINSSTTTTTATIQQQQQQNIPQQF-PQPIQSPLKMLNIDQQIL 617

Query:   310 LESDDGFACPLPIQEDNSLMN 330
                ++ F     I++D  LM+
Sbjct:   618 NSYENNFKNQF-IEKDFLLMD 637

GO:0043565 "sequence-specific DNA binding" evidence=IEA

GO:0008270 "zinc ion binding" evidence=IEA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA

GO:0046872 "metal ion binding" evidence=IEA

TAIR|locus:2139594 GATA3 "GATA transcription factor 3" [Arabidopsis thaliana (taxid:3702)]

 Score = 114 (45.2 bits), Expect = 0.00035, P = 0.00035
 Identities = 32/91 (35%), Positives = 43/91 (47%)

Query:   205 RICQHCGISEKLTPAMRRGPAGPRTLCNACGLMWANKGTLRDLTKGARNICFEQHELETS 264
             R C HCG +   TP  R GP GP+TLCNACG+ + + G L    + A +  F     E  
Sbjct:   180 RRCSHCGTNN--TPQWRTGPVGPKTLCNACGVRFKS-GRLCPEYRPADSPTFSN---EIH 233

Query:   265 SDIKPATTEAENSYANQDEQGSPHETKPAPL 295
             S++     E   S    +E G    TK  P+
Sbjct:   234 SNLHRKVLELRKSKELGEETGEA-STKSDPV 263

GO:0003677 "DNA binding" evidence=IEA

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=ISM;IEA;IDA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

GO:0008270 "zinc ion binding" evidence=IEA

GO:0043565 "sequence-specific DNA binding" evidence=IEA

GO:0045893 "positive regulation of transcription, DNA-dependent" evidence=IEA

GO:0005730 "nucleolus" evidence=IDA

GO:0007623 "circadian rhythm" evidence=IEP

TAIR|locus:504955441 AT4G16141 [Arabidopsis thaliana (taxid:3702)]

 Score = 109 (43.4 bits), Expect = 0.00053, P = 0.00053
 Identities = 34/115 (29%), Positives = 50/115 (43%)

Query:   205 RICQHCGISEKLTPAMRRGPAGPRTLCNACGLMWANK-----GTLRD----LTKGARNIC 255
             + C  CG S   TP  R GPAGP++LCNACG+    K     G  +D     +K   N+ 
Sbjct:    37 KTCVDCGTSR--TPLWRGGPAGPKSLCNACGIKSRKKRQAALGIRQDDIKIKSKSNNNLG 94

Query:   256 FEQHELETSSDIKPATTEAENSYAN--QDEQGSPHETK-PAPLDPQNHSMRSNEQ 307
              E   ++T    +P   +         +  +G P   K     DP+N S  +N +
Sbjct:    95 LESRNVKTGKG-EPVNVKIAKCEPGIVKIAKGEPGNVKNKIKRDPENSSSSNNNK 148

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA

GO:0005634 "nucleus" evidence=ISM

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

GO:0008270 "zinc ion binding" evidence=IEA

GO:0043565 "sequence-specific DNA binding" evidence=IEA

DICTYBASE|DDB_G0270756 gtaG "GATA zinc finger domain-containing protein 7" [Dictyostelium discoideum (taxid:44689)]

 Score = 119 (46.9 bits), Expect = 0.00074, P = 0.00074
 Identities = 32/104 (30%), Positives = 48/104 (46%)

Query:   207 CQHCGISEKLTPAMRRGPAGPRTLCNACGLMWANKG-----TLRDLTKGARNICFEQHEL 261
             C +CG   K TP  RRGP+GP TLCNACGL +A K       L  L   + +  + +  +
Sbjct:   842 CHNCGT--KNTPEWRRGPSGPATLCNACGLAYAKKQREEETNLHKLLLHSNSYSYHRGNM 899

Query:   262 ETSSDIKPATTEAENSYANQDEQGSPHETKPAPLDPQNHSMRSN 305
                S + P+     N+ AN     +P+    +     + S  S+
Sbjct:   900 -LESYVTPSLLPLFNTAANVPYLNTPNNASSSSSSSSSSSSSSS 942

GO:0030587 "sorocarp development" evidence=IMP

GO:0043565 "sequence-specific DNA binding" evidence=IEA

GO:0008270 "zinc ion binding" evidence=IEA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA

GO:0046872 "metal ion binding" evidence=IEA

TAIR|locus:2103346 GATA4 "GATA transcription factor 4" [Arabidopsis thaliana (taxid:3702)]

 Score = 110 (43.8 bits), Expect = 0.00076, P = 0.00076
 Identities = 21/35 (60%), Positives = 25/35 (71%)

Query:   204 SRICQHCGISEKLTPAMRRGPAGPRTLCNACGLMW 238
             +R C HC  SEK TP  R GP GP+TLCNACG+ +
Sbjct:   157 ARRCTHCA-SEK-TPQWRTGPLGPKTLCNACGVRY 189

GO:0003677 "DNA binding" evidence=IEA

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=ISM;IEA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

GO:0008270 "zinc ion binding" evidence=IEA

GO:0043565 "sequence-specific DNA binding" evidence=IEA

GO:0045893 "positive regulation of transcription, DNA-dependent" evidence=IEA

GO:0009416 "response to light stimulus" evidence=IEP

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	365
pfam06203	45	pfam06203, CCT, CCT motif	5e-17
cd00202	54	cd00202, ZnF_GATA, Zinc finger DNA binding domain;	9e-14
pfam00320	36	pfam00320, GATA, GATA zinc finger	7e-12
smart00401	52	smart00401, ZnF_GATA, zinc finger binding to DNA c	2e-11
pfam06200	36	pfam06200, tify, tify domain	4e-05
smart00979	36	smart00979, TIFY, This short possible domain is fo	3e-04

>gnl|CDD|203407 pfam06203, CCT, CCT motif

 Score = 73.8 bits (182), Expect = 5e-17
 Identities = 22/44 (50%), Positives = 30/44 (68%)

Query: 138 RIASLVRFREKRKERSFEKKIRYSCRKEVAQRMQRKNGQFTSSK 181
           R A+L+R++EKRK R F+KKIRY+ RK VA+   R  G+F    
Sbjct: 1   REAALLRYKEKRKTRKFDKKIRYASRKAVAESRPRVKGRFVKQS 44

This short motif is found in a number of plant proteins. It is rich in basic amino acids and has been called a CCT motif after Co, Col and Toc1. The CCT motif is about 45 amino acids long and contains a putative nuclear localisation signal within the second half of the CCT motif. Toc1 mutants have been identified in this region. Length = 45

>gnl|CDD|238123 cd00202, ZnF_GATA, Zinc finger DNA binding domain; binds specifically to DNA consensus sequence [AT]GATA[AG] promoter elements; a subset of family members may also bind protein; zinc-finger consensus topology is C-X(2)-C-X(17)-C-X(2)-C

 Score = 64.7 bits (158), Expect = 9e-14
 Identities = 23/45 (51%), Positives = 28/45 (62%), Gaps = 2/45 (4%)

Query: 206 ICQHCGISEKLTPAMRRGPAGPRTLCNACGLMWANKGTLRDLTKG 250
            C +CG +   TP  RRGP+G  TLCNACGL W   G +R L+K 
Sbjct: 1   ACSNCGTTT--TPLWRRGPSGGSTLCNACGLYWKKHGVMRPLSKR 43

Length = 54

>gnl|CDD|109380 pfam00320, GATA, GATA zinc finger

 Score = 58.8 bits (143), Expect = 7e-12
 Identities = 20/38 (52%), Positives = 24/38 (63%), Gaps = 2/38 (5%)

Query: 207 CQHCGISEKLTPAMRRGPAGPRTLCNACGLMWANKGTL 244
           C +CG ++  TP  RRGP G RTLCNACGL +   G  
Sbjct: 1   CSNCGTTK--TPLWRRGPDGNRTLCNACGLYYRKHGLK 36

This domain uses four cysteine residues to coordinate a zinc ion. This domain binds to DNA. Two GATA zinc fingers are found in the GATA transcription factors. However there are several proteins which only contains a single copy of the domain. Length = 36

>gnl|CDD|214648 smart00401, ZnF_GATA, zinc finger binding to DNA consensus sequence [AT]GATA[AG]

 Score = 58.2 bits (141), Expect = 2e-11
 Identities = 22/41 (53%), Positives = 28/41 (68%), Gaps = 2/41 (4%)

Query: 205 RICQHCGISEKLTPAMRRGPAGPRTLCNACGLMWANKGTLR 245
           R C +CG +E  TP  RRGP+G +TLCNACGL +   G L+
Sbjct: 4   RSCSNCGTTE--TPLWRRGPSGNKTLCNACGLYYKKHGGLK 42

Length = 52

>gnl|CDD|203405 pfam06200, tify, tify domain

 Score = 39.8 bits (94), Expect = 4e-05
 Identities = 12/31 (38%), Positives = 19/31 (61%)

Query: 74  TSELTVAYEGEVYVFPAVTPHKVQALLLLLG 104
           +++LT+ Y G+V VF  V P K Q ++ L  
Sbjct: 5   SAQLTIFYGGQVCVFDDVPPEKAQEIMRLAS 35

This short possible domain is found in a variety of plant transcription factors that contain GATA domains as well as other motifs. Although previously known as the Zim domain this is now called the tify domain after its most conserved amino acids. TIFY proteins can be further classified into two groups depending on the presence (group I) or absence (group II) of a C2C2-GATA domain. Functional annotation of these proteins is still poor, but several screens revealed a link between TIFY proteins of group II and jasmonic acid-related stress response. Length = 36

>gnl|CDD|198047 smart00979, TIFY, This short possible domain is found in a variety of plant transcription factors that contain GATA domains as well as other motifs

 Score = 37.6 bits (88), Expect = 3e-04
 Identities = 13/32 (40%), Positives = 18/32 (56%)

Query: 74  TSELTVAYEGEVYVFPAVTPHKVQALLLLLGE 105
           + +LT+ Y G V VF  V P K Q ++ L G 
Sbjct: 5   SQQLTIFYGGSVCVFDDVPPEKAQEIMSLAGN 36

Although previously known as the Zim domain this is now called the tify domain after its most conserved amino acids. TIFY proteins can be further classified into two groups depending on the presence (group I) or absence (group II) of a C2C2-GATA domain. Functional annotation of these proteins is still poor, but several screens revealed a link between TIFY proteins of group II and jasmonic acid-related stress response. Length = 36

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	365
PF06200	36	tify: tify domain; InterPro: IPR010399 The tify do	99.59
cd00202	54	ZnF_GATA Zinc finger DNA binding domain; binds spe	99.57
smart00401	52	ZnF_GATA zinc finger binding to DNA consensus sequ	99.5
PF00320	36	GATA: GATA zinc finger; InterPro: IPR000679 Zinc f	99.49
PF06203	45	CCT: CCT motif; InterPro: IPR010402 The CCT (CONST	99.14
KOG1601	340	consensus GATA-4/5/6 transcription factors [Transc	98.62
COG5641	498	GAT1 GATA Zn-finger-containing transcription facto	98.27
PF09425	27	CCT_2: Divergent CCT motif; InterPro: IPR018467 Th	97.56
COG5641	498	GAT1 GATA Zn-finger-containing transcription facto	90.21

>PF06200 tify: tify domain; InterPro: IPR010399 The tify domain is a 36-amino acid domain only found among Embryophyta (land plants)

Probab=99.59  E-value=1.5e-15  Score=105.81  Aligned_cols=35  Identities=43%  Similarity=0.698  Sum_probs=32.7

Q ss_pred             CCCCCccceEEEccEEEEeCCCChHHHHHHHHHhc
Q 017834           70 TSTRTSELTVAYEGEVYVFPAVTPHKVQALLLLLG  104 (365)
Q Consensus        70 ~~~~t~QLTIfY~G~V~VFD~VppeKaqaImllag  104 (365)
                      +.+.++||||||+|+|+|||+||+|||++||+||+
T Consensus         1 ~~~~~~qLTIfY~G~V~Vfd~v~~~Ka~~im~lA~   35 (36)
T PF06200_consen    1 PSPETAQLTIFYGGQVCVFDDVPPDKAQEIMLLAS   35 (36)
T ss_pred             CCCCCCcEEEEECCEEEEeCCCCHHHHHHHHHHhc
Confidence            35678899999999999999999999999999997

It has been named after the most conserved amino acid pattern (TIF[F/Y]XG) it contains, but was previously known as the Zim domain. As the use of uppercase characters (TIFY) might imply that the domain is fully conserved across proteins, a lowercase lettering has been chosen in an attempt to highlight the reality of its natural variability. Based on the domain architecture, tify domain containing proteins can be classified into two groups. Group I is formed by proteins possessing a CCT (CONSTANS, CO-like, and TOC1) domain and a GATA-type zinc finger in addition to the tify domain. Group II contains proteins characterised by the tify domain but lacking a GATA-type zinc finger. Tify domain containing proteins might be involved in developmental processes and some of them have features that are characteristic for transcription factors: a nuclear localisation and the presence of a putative DNA-binding domain []. Some proteins known to contain a tify domain include: Arabidopsis thaliana Zinc-finger protein expressed in Inflorescence Meristem (ZIM), a putative transcription factor involved in inflorescence and flower development [, ]. A. thaliana ZIM-like proteins (ZML) []. A. thaliana PEAPOD1 and PEAPOD2 (PPD1 and PPD2) [].

>cd00202 ZnF_GATA Zinc finger DNA binding domain; binds specifically to DNA consensus sequence [AT]GATA[AG] promoter elements; a subset of family members may also bind protein; zinc-finger consensus topology is C-X(2)-C-X(17)-C-X(2)-C

Probab=99.57  E-value=1.5e-15  Score=114.16  Aligned_cols=44  Identities=52%  Similarity=1.129  Sum_probs=40.9

Q ss_pred             ccccccccccCCCccccCCCCCchhchHhhhhHHhcCCCCCCCcCC
Q 017834          206 ICQHCGISEKLTPAMRRGPAGPRTLCNACGLMWANKGTLRDLTKGA  251 (365)
Q Consensus       206 ~C~~Cg~t~~~TP~WRrGP~G~~tLCNACGl~~~~~~~~r~~~k~~  251 (365)
                      .|+||+++  .||+||+||.|..+|||||||||++++..|+.....
T Consensus         1 ~C~~C~~~--~Tp~WR~g~~~~~~LCNaCgl~~~k~~~~rp~~~~~   44 (54)
T cd00202           1 ACSNCGTT--TTPLWRRGPSGGSTLCNACGLYWKKHGVMRPLSKRK   44 (54)
T ss_pred             CCCCCCCC--CCcccccCCCCcchHHHHHHHHHHhcCCCCCcccCc
Confidence            59999998  799999999998999999999999999999988765

>smart00401 ZnF_GATA zinc finger binding to DNA consensus sequence [AT]GATA[AG]

Probab=99.50  E-value=7.8e-15  Score=109.38  Aligned_cols=45  Identities=51%  Similarity=1.039  Sum_probs=40.6

Q ss_pred             ccccccccccccCCCccccCCCCCchhchHhhhhHHhcCCC-CCCCcC
Q 017834          204 SRICQHCGISEKLTPAMRRGPAGPRTLCNACGLMWANKGTL-RDLTKG  250 (365)
Q Consensus       204 ~~~C~~Cg~t~~~TP~WRrGP~G~~tLCNACGl~~~~~~~~-r~~~k~  250 (365)
                      ...|+||+++  .||+||+||.|..+|||||||+|++++.+ |+..+.
T Consensus         3 ~~~C~~C~~~--~T~~WR~g~~g~~~LCnaCgl~~~k~~~~~rp~~~~   48 (52)
T smart00401        3 GRSCSNCGTT--ETPLWRRGPSGNKTLCNACGLYYKKHGGLKRPLSLK   48 (52)
T ss_pred             CCCcCCCCCC--CCCccccCCCCCCcEeecccHHHHHcCCCCCccccc
Confidence            5799999998  69999999999889999999999999998 776554

>PF00320 GATA: GATA zinc finger; InterPro: IPR000679 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule

Probab=99.49  E-value=6.8e-15  Score=102.03  Aligned_cols=36  Identities=56%  Similarity=1.199  Sum_probs=28.6

Q ss_pred             cccccccccCCCccccCCCCCchhchHhhhhHHhcCCC
Q 017834          207 CQHCGISEKLTPAMRRGPAGPRTLCNACGLMWANKGTL  244 (365)
Q Consensus       207 C~~Cg~t~~~TP~WRrGP~G~~tLCNACGl~~~~~~~~  244 (365)
                      |+||+++  .||+||+||.|..+||||||++|++++++
T Consensus         1 C~~C~tt--~t~~WR~~~~g~~~LCn~Cg~~~kk~~~~   36 (36)
T PF00320_consen    1 CSNCGTT--ETPQWRRGPNGNRTLCNACGLYYKKYGKM   36 (36)
T ss_dssp             -TTT--S--T-SSEEEETTSEE-EEHHHHHHHHHHSS-
T ss_pred             CcCCcCC--CCchhhcCCCCCCHHHHHHHHHHHHhCCC
Confidence            8999998  69999999999889999999999999864

Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents GATA-type zinc fingers (Znf). A number of transcription factors (including erythroid-specific transcription factor and nitrogen regulatory proteins), specifically bind the DNA sequence (A/T)GATA(A/G) [] in the regulatory regions of genes. They are consequently termed GATA-binding transcription factors. The interactions occur via highly-conserved Znf domains in which the zinc ion is coordinated by 4 cysteine residues [, ]. NMR studies have shown the core of the Znf to comprise 2 irregular anti-parallel beta-sheets and an alpha-helix, followed by a long loop to the C-terminal end of the finger. The N-terminal part, which includes the helix, is similar in structure, but not sequence, to the N-terminal zinc module of the glucocorticoid receptor DNA-binding domain. The helix and the loop connecting the 2 beta-sheets interact with the major groove of the DNA, while the C-terminal tail wraps around into the minor groove. It is this tail that is the essential determinant of specific binding. Interactions between the Znf and DNA are mainly hydrophobic, explaining the preponderance of thymines in the binding site; a large number of interactions with the phosphate backbone have also been observed []. Two GATA zinc fingers are found in the GATA transcription factors. However there are several proteins which only contains a single copy of the domain. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0008270 zinc ion binding, 0043565 sequence-specific DNA binding, 0006355 regulation of transcription, DNA-dependent; PDB: 3GAT_A 2GAT_A 1GAU_A 1GAT_A 1Y0J_A 1GNF_A 2L6Z_A 2L6Y_A 3DFV_D 3DFX_B ....

>PF06203 CCT: CCT motif; InterPro: IPR010402 The CCT (CONSTANS, CO-like, and TOC1) domain is a highly conserved basic module of ~43 amino acids, which is found near the C terminus of plant proteins often involved in light signal transduction

Probab=99.14  E-value=2e-11  Score=89.02  Aligned_cols=44  Identities=52%  Similarity=0.819  Sum_probs=41.7

Q ss_pred             HHHHHHHHHHhhccccCCceeeeccchhhHhhhhhccccccccc
Q 017834          138 RIASLVRFREKRKERSFEKKIRYSCRKEVAQRMQRKNGQFTSSK  181 (365)
Q Consensus       138 R~aSL~RfreKRk~R~f~KkirYs~RK~~A~r~~R~KGqFas~k  181 (365)
                      |.++|.||++||+.|+|.|+|+|.+|+.+|+.++|.+|+|++..
T Consensus         1 R~~~l~Ry~~Kr~~R~f~kkirY~~Rk~~A~~R~RvkGRFvk~~   44 (45)
T PF06203_consen    1 REEKLQRYREKRKRRNFEKKIRYESRKAVADKRPRVKGRFVKKS   44 (45)
T ss_pred             CHHHHHHHHHHHHhhcccccCCcchHHHHHhhCCccCCcccCCC
Confidence            67899999999999999999999999999999999999999854

The CCT domain is found in association with other domains, such as the B-box zinc finger, the GATA-type zinc finger, the ZIM motif or the response regulatory domain. The CCT domain contains a putative nuclear localisation signal within the second half of the CCT motif and has been shown to be involved in nuclear localization and probably also has a role in protein-protein interaction [].; GO: 0005515 protein binding

>KOG1601 consensus GATA-4/5/6 transcription factors [Transcription]

Probab=98.62  E-value=1.8e-08  Score=90.88  Aligned_cols=45  Identities=49%  Similarity=1.025  Sum_probs=38.7

Q ss_pred             ccccccccccccCCCccccCCCCCchhchHhhhhHHhcCCCCCCCcC
Q 017834          204 SRICQHCGISEKLTPAMRRGPAGPRTLCNACGLMWANKGTLRDLTKG  250 (365)
Q Consensus       204 ~~~C~~Cg~t~~~TP~WRrGP~G~~tLCNACGl~~~~~~~~r~~~k~  250 (365)
                      ...|.+|+++  .||+||++|.|+..||||||++|++++..|.+...
T Consensus       199 ~~~c~~~~~~--~t~~~r~~~~g~~~~cnacgl~~k~~~~~r~~~~~  243 (340)
T KOG1601|consen  199 LRQCSNCGTT--KTPLWRRGPEGPKSLCNACGLRYKKGGVRRPLPEK  243 (340)
T ss_pred             CcccCCCCCC--CCcceecCCCCCccccccchhhhhhcCcccccccc
Confidence            4799999997  79999999999999999999999999744444444

>COG5641 GAT1 GATA Zn-finger-containing transcription factor [Transcription]

Probab=98.27  E-value=4.2e-07  Score=94.76  Aligned_cols=53  Identities=28%  Similarity=0.597  Sum_probs=43.6

Q ss_pred             CCCcccccccccccccccCCCccccCCCC----CchhchHhhhhHHhcCCCC-CCCcCCC
Q 017834          198 APPESVSRICQHCGISEKLTPAMRRGPAG----PRTLCNACGLMWANKGTLR-DLTKGAR  252 (365)
Q Consensus       198 ~~~~~~~~~C~~Cg~t~~~TP~WRrGP~G----~~tLCNACGl~~~~~~~~r-~~~k~~~  252 (365)
                      ...+.+...|.||.++  .||+|||+..+    .-.|||||||+|+.|+++| +++-...
T Consensus       152 ~~~s~~~~vc~Nc~t~--stPlwrR~~~~~s~~~n~lcnaCgl~~klhg~~r~P~t~ks~  209 (498)
T COG5641         152 SDNSNQPHVCSNCKTT--STPLWRRASSESSLPGNNLCNACGLYLKLHGSPRAPISLKSD  209 (498)
T ss_pred             cccccccchhcccccc--CCccccccccccccCCccccccccccccccCCcCCCcccccc
Confidence            3344456699999998  79999999993    3899999999999999999 7665543

>PF09425 CCT_2: Divergent CCT motif; InterPro: IPR018467 The short CCT (CO, COL, TOC1) motif is found in a number of plant proteins, including Constans (CO), Constans-like (COL) and TOC1

Probab=97.56  E-value=3.5e-05  Score=50.81  Aligned_cols=24  Identities=54%  Similarity=0.628  Sum_probs=10.0

Q ss_pred             HHHHHHHHHHHhhccccCCceeeec
Q 017834          137 QRIASLVRFREKRKERSFEKKIRYS  161 (365)
Q Consensus       137 ~R~aSL~RfreKRk~R~f~KkirYs  161 (365)
                      +|++||+||+||||+|.+.+ .+|.
T Consensus         3 aRK~SLqRFLeKRK~R~~~~-~PY~   26 (27)
T PF09425_consen    3 ARKASLQRFLEKRKDRLAAK-SPYQ   26 (27)
T ss_dssp             ---HHHHHHHHHH------------
T ss_pred             hHHHHHHHHHHHHHHhhccC-CCCC
Confidence            68999999999999999984 7885

The CCT motif is about 45 amino acids long and contains a putative nuclear localisation signal within the second half of the CCT motif []. The CCT motif is found in the Arabidopsis circadian rhythm protein TOC1, an autoregulatory response regulator homologue the controls the photoperiodic flowering through its clock function []. ; GO: 0005515 protein binding; PDB: 3OGK_V 3OGL_S 3OGM_W.

>COG5641 GAT1 GATA Zn-finger-containing transcription factor [Transcription]

Probab=90.21  E-value=0.14  Score=54.17  Aligned_cols=52  Identities=23%  Similarity=0.200  Sum_probs=43.2

Q ss_pred             ccccccccccccCCCccccCCCCCchhchHhhhhHHhcCCCCCCCcCCCcccc
Q 017834          204 SRICQHCGISEKLTPAMRRGPAGPRTLCNACGLMWANKGTLRDLTKGARNICF  256 (365)
Q Consensus       204 ~~~C~~Cg~t~~~TP~WRrGP~G~~tLCNACGl~~~~~~~~r~~~k~~~~i~~  256 (365)
                      ...|.+|++. +.||.||+...-.-.+|||||++-+.++..+++.++......
T Consensus       297 ~~~~s~~~~~-~~tp~~~r~~~~~s~~~n~~~~~~~~~~~~~p~~pk~d~n~~  348 (498)
T COG5641         297 DKKRSTLTTS-TATPLWRRTSDKSSFSCNASGSALKPPGSKRPLLPKPDPNSK  348 (498)
T ss_pred             hcCccccccc-ccCcccccccccccccccccccccCCcccccccCCCCChhhh
Confidence            5688999875 469999999888789999999999999999998886543333

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	365
2kae_A	71	GATA-type transcription factor; zinc finger, GATA-	4e-11
1gnf_A	46	Transcription factor GATA-1; zinc finger, transcri	2e-10
4gat_A	66	Nitrogen regulatory protein AREA; DNA binding prot	2e-07
3dfx_A	63	Trans-acting T-cell-specific transcription factor	3e-07
2vut_I	43	AREA, nitrogen regulatory protein AREA; transcript	3e-07
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	3e-07
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	6e-07

>2kae_A GATA-type transcription factor; zinc finger, GATA-type, DNA; NMR {Caenorhabditis elegans} Length = 71

 Score = 57.2 bits (138), Expect = 4e-11
 Identities = 12/48 (25%), Positives = 18/48 (37%), Gaps = 2/48 (4%)

Query: 201 ESVSRICQHCGISEKLTPAMRRGPAGPRTLCNACGLMWANKGTLRDLT 248
              S  C +C ++E  T   R   +     CNAC +        R +T
Sbjct: 5   NKKSFQCSNCSVTE--TIRWRNIRSKEGIQCNACFIYQRKYNKTRPVT 50

>1gnf_A Transcription factor GATA-1; zinc finger, transcription regulation; NMR {Mus musculus} SCOP: g.39.1.1 PDB: 1y0j_A 2l6y_A 2l6z_A Length = 46

 Score = 54.7 bits (132), Expect = 2e-10
 Identities = 20/48 (41%), Positives = 24/48 (50%), Gaps = 3/48 (6%)

Query: 202 SVSRICQHCGISEKLTPAMRRGPAGPRTLCNACGLMWANKGTLRDLTK 249
           S +R C +CG +   TP  RR   G   LCNACGL     G  R L +
Sbjct: 2   SEARECVNCGATA--TPLWRRDRTG-HYLCNACGLYHKMNGQNRPLIR 46

>4gat_A Nitrogen regulatory protein AREA; DNA binding protein, transcription factor, zinc binding domain, complex (transcription regulation/DNA); HET: DNA; NMR {Emericella nidulans} SCOP: g.39.1.1 PDB: 5gat_A* 6gat_A* 7gat_A* Length = 66

 Score = 46.6 bits (110), Expect = 2e-07
 Identities = 19/54 (35%), Positives = 25/54 (46%), Gaps = 3/54 (5%)

Query: 201 ESVSRICQHCGISEKLTPAMRRGPAGPRTLCNACGLMWANKGTLRDLTKGARNI 254
           ++    C +C      TP  RR P G + LCNACGL     G +R L+     I
Sbjct: 6   QNGPTTCTNCFTQT--TPLWRRNPEG-QPLCNACGLFLKLHGVVRPLSLKTDVI 56

>3dfx_A Trans-acting T-cell-specific transcription factor GATA-3; activator, DNA-binding, metal-binding, nucleus; HET: DNA; 2.70A {Mus musculus} PDB: 3dfv_D* 2gat_A* 3gat_A* 1gat_A* 1gau_A* Length = 63

 Score = 46.2 bits (109), Expect = 3e-07
 Identities = 16/57 (28%), Positives = 21/57 (36%), Gaps = 3/57 (5%)

Query: 198 APPESVSRICQHCGISEKLTPAMRRGPAGPRTLCNACGLMWANKGTLRDLTKGARNI 254
           +        C +C  +   T   RR   G   +CNACGL +      R LT     I
Sbjct: 1   SAARRAGTSCANCQTTT--TTLWRRNANG-DPVCNACGLYYKLHNINRPLTMKKEGI 54

>2vut_I AREA, nitrogen regulatory protein AREA; transcription regulation, protein-protein interactions, metal-binding, nitrate assimilation; HET: NAD; 2.3A {Emericella nidulans} SCOP: g.39.1.1 PDB: 2vus_I* 2vuu_I* Length = 43

 Score = 45.5 bits (108), Expect = 3e-07
 Identities = 18/44 (40%), Positives = 22/44 (50%), Gaps = 3/44 (6%)

Query: 205 RICQHCGISEKLTPAMRRGPAGPRTLCNACGLMWANKGTLRDLT 248
             C +C      TP  RR P G + LCNACGL     G +R L+
Sbjct: 2   TTCTNCFTQT--TPLWRRNPEG-QPLCNACGLFLKLHGVVRPLS 42

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 51.4 bits (122), Expect = 3e-07
 Identities = 60/410 (14%), Positives = 109/410 (26%), Gaps = 123/410 (30%)

Query: 12  RPYIDTEEHD-VAQTPIPIQ-----------NGSKQGDRYDEPEEVEDEAG--ASSVNRK 57
           +  +  EE D +  +   +               +   ++ E E +        S +  +
Sbjct: 43  KSILSKEEIDHIIMSKDAVSGTLRLFWTLLSKQEEMVQKFVE-EVLRINYKFLMSPIKTE 101

Query: 58  SNDRGGSSVQSSTSTRTSELTVAYEGEVYVFPA--VT-PHKVQALLLLLGECDIPSTVPS 114
                       T     +    Y  +  VF    V+       L   L E         
Sbjct: 102 QRQPSMM-----TRMYIEQRDRLY-NDNQVFAKYNVSRLQPYLKLRQALLE--------- 146

Query: 115 SAFAQP-QNI----MSGGSASNGSKLSQRIASLVRFREKRKERSFEKKI------RYSCR 163
               +P +N+    +  GS   G K    +A  V     + +   + KI        +  
Sbjct: 147 ---LRPAKNVLIDGV-LGS---G-K--TWVALDV-CLSYKVQCKMDFKIFWLNLKNCNSP 195

Query: 164 KEVAQRMQRKNGQFTSSKATFNIASANSNPSNGSAPPESVSRICQHCGISEKLTPAMRRG 223
           + V + +Q+   Q        N  S + + SN      S         I  +L   ++  
Sbjct: 196 ETVLEMLQKLLYQIDP-----NWTSRSDHSSNIKLRIHS---------IQAELRRLLKSK 241

Query: 224 PAGPRTL------CNA---------CG-LMWANKGTLRDLTKGARNICFEQHELETSSD- 266
           P     L       NA         C  L+     T R   K   +          S D 
Sbjct: 242 P-YENCLLVLLNVQNAKAWNAFNLSCKILL-----TTRF--KQVTDFLSAATTTHISLDH 293

Query: 267 IKPATTEAEN-----SYANQDEQGSPHE-TKPAPL-------DPQNHSMRSNEQYLLESD 313
                T  E       Y +   Q  P E     P          ++      + +   + 
Sbjct: 294 HSMTLTPDEVKSLLLKYLDCRPQDLPREVLTTNPRRLSIIAESIRDGLATW-DNWKHVNC 352

Query: 314 DGFACPLPIQEDNSLMNLDDEDLQEAMDELANASGSDFEIPSNFDEQVFI 363
           D     +    ++SL  L+  + ++  D L+        +   F     I
Sbjct: 353 DKLTTII----ESSLNVLEPAEYRKMFDRLS--------V---FPPSAHI 387

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 50.6 bits (120), Expect = 6e-07
 Identities = 58/393 (14%), Positives = 119/393 (30%), Gaps = 117/393 (29%)

Query: 2   FAMNP------QP-LQARPYIDTEEHDVAQTPIPIQNGSKQGDRYD--EPEEVED-EAGA 51
           F M+P      QP +  R YI  E+ D       + N ++   +Y+    +         
Sbjct: 93  FLMSPIKTEQRQPSMMTRMYI--EQRD------RLYNDNQVFAKYNVSRLQPYLKLRQAL 144

Query: 52  SSVNRKSN-----DRG-GSSVQSSTSTRTSELTVAYEGEVYVFPAVTPHKVQALLLLLGE 105
             +    N       G G +  +     + ++    + +++              L L  
Sbjct: 145 LELRPAKNVLIDGVLGSGKTWVALDVCLSYKVQCKMDFKIF-------------WLNLKN 191

Query: 106 CDIPSTVPSSAFAQPQN----IMSGGSA--SNGSKLSQRIASL---VR--FREKRKERSF 154
           C+ P TV        Q     I    ++   + S +  RI S+   +R   + K  E   
Sbjct: 192 CNSPETV----LEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCL 247

Query: 155 --------EKKIRY---SCRKEVAQRMQRKNGQFTSSKATFNIASANSNPSNGSAPPESV 203
                    K       SC+  +  R  ++   F S+  T +I+    + S    P E  
Sbjct: 248 LVLLNVQNAKAWNAFNLSCKILLTTR-FKQVTDFLSAATTTHISL--DHHSMTLTPDEVK 304

Query: 204 SRICQHCGIS-EKLTPAMRRGPAGPRTLCNACGLMWANKGTLRDLTKGARNICFEQHELE 262
           S + ++     + L   +      PR       ++  +   +RD    A    ++    +
Sbjct: 305 SLLLKYLDCRPQDLPREVLTT--NPR----RLSIIAES---IRDGL--ATWDNWKHVNCD 353

Query: 263 TSSDIKPATTEAENSYANQDEQGSPHETKPAPLDPQNHSMRSNEQY----LLESDDGFAC 318
             + I       E+S    +    P E +              + +    +         
Sbjct: 354 KLTTI------IESSLNVLE----PAEYR--------------KMFDRLSVFPPS----A 385

Query: 319 PLPIQEDNSLM----NLDDEDLQEAMDELANAS 347
            +P      L     ++   D+   +++L   S
Sbjct: 386 HIPTI---LLSLIWFDVIKSDVMVVVNKLHKYS 415

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	365
3dfx_A	63	Trans-acting T-cell-specific transcription factor	99.69
1gnf_A	46	Transcription factor GATA-1; zinc finger, transcri	99.69
2vut_I	43	AREA, nitrogen regulatory protein AREA; transcript	99.68
4gat_A	66	Nitrogen regulatory protein AREA; DNA binding prot	99.65
2kae_A	71	GATA-type transcription factor; zinc finger, GATA-	99.54
4hc9_A	115	Trans-acting T-cell-specific transcription factor;	99.49
4hc9_A	115	Trans-acting T-cell-specific transcription factor;	99.4
3ogk_Q	22	JAZ1 incomplete degron peptide; leucine rich repea	97.23
3ogl_Q	21	JAZ1 incomplete degron peptide; leucine-rich repea	96.76

>3dfx_A Trans-acting T-cell-specific transcription factor GATA-3; activator, DNA-binding, metal-binding, nucleus; HET: DNA; 2.70A {Mus musculus} PDB: 3dfv_D* 2gat_A* 3gat_A* 1gat_A* 1gau_A*

Probab=99.69  E-value=1e-17  Score=128.66  Aligned_cols=54  Identities=30%  Similarity=0.540  Sum_probs=46.7

Q ss_pred             ccccccccccccCCCccccCCCCCchhchHhhhhHHhcCCCCCCCcCCCcccccccc
Q 017834          204 SRICQHCGISEKLTPAMRRGPAGPRTLCNACGLMWANKGTLRDLTKGARNICFEQHE  260 (365)
Q Consensus       204 ~~~C~~Cg~t~~~TP~WRrGP~G~~tLCNACGl~~~~~~~~r~~~k~~~~i~~~q~~  260 (365)
                      ...|+||+++  .||+||+||+|+ +|||||||+|++++++|+++.....|....+.
T Consensus         7 ~~~C~~C~tt--~Tp~WR~gp~G~-~LCNACGl~~~~~~~~RP~~~~~~~i~~R~Rk   60 (63)
T 3dfx_A            7 GTSCANCQTT--TTTLWRRNANGD-PVCNACGLYYKLHNINRPLTMKKEGIQTRNRK   60 (63)
T ss_dssp             TCCCTTTCCS--CCSSCCCCTTSC-CCCHHHHHHHHHHSSCCCGGGCCSSCCCCC--
T ss_pred             CCcCCCcCCC--CCCccCCCCCCC-chhhHHHHHHHHcCCCCCcCcCCCccccccCC
Confidence            6799999998  699999999996 99999999999999999998877666655443

>1gnf_A Transcription factor GATA-1; zinc finger, transcription regulation; NMR {Mus musculus} SCOP: g.39.1.1 PDB: 1y0j_A 2l6y_A 2l6z_A

Probab=99.69  E-value=8.7e-18  Score=121.69  Aligned_cols=43  Identities=44%  Similarity=0.832  Sum_probs=40.2

Q ss_pred             ccccccccccccCCCccccCCCCCchhchHhhhhHHhcCCCCCCCc
Q 017834          204 SRICQHCGISEKLTPAMRRGPAGPRTLCNACGLMWANKGTLRDLTK  249 (365)
Q Consensus       204 ~~~C~~Cg~t~~~TP~WRrGP~G~~tLCNACGl~~~~~~~~r~~~k  249 (365)
                      ...|+||+++  .||+||+||+|+ +|||||||||++++++|+++|
T Consensus         4 ~~~C~~C~tt--~Tp~WR~gp~G~-~LCNaCGl~~k~~~~~RP~~~   46 (46)
T 1gnf_A            4 ARECVNCGAT--ATPLWRRDRTGH-YLCNACGLYHKMNGQNRPLIR   46 (46)
T ss_dssp             SCCCTTTCCC--CCSSCBCCTTCC-CBCSHHHHHHHHTCSCCCCCC
T ss_pred             CCCCCCcCCC--CCCcCccCCCCC-ccchHHHHHHHHcCCCCCCCC
Confidence            5689999998  699999999996 999999999999999999875

>2vut_I AREA, nitrogen regulatory protein AREA; transcription regulation, protein-protein interactions, metal-binding, nitrate assimilation; HET: NAD; 2.3A {Emericella nidulans} SCOP: g.39.1.1 PDB: 2vus_I* 2vuu_I*

Probab=99.68  E-value=1.2e-17  Score=119.45  Aligned_cols=41  Identities=44%  Similarity=0.878  Sum_probs=38.5

Q ss_pred             cccccccccccCCCccccCCCCCchhchHhhhhHHhcCCCCCCC
Q 017834          205 RICQHCGISEKLTPAMRRGPAGPRTLCNACGLMWANKGTLRDLT  248 (365)
Q Consensus       205 ~~C~~Cg~t~~~TP~WRrGP~G~~tLCNACGl~~~~~~~~r~~~  248 (365)
                      ..|++|+++  .||+||+||+|+ +|||||||+|++|+++|+++
T Consensus         2 ~~C~~C~tt--~Tp~WR~gp~G~-~LCNaCGl~~k~~~~~RP~~   42 (43)
T 2vut_I            2 TTCTNCFTQ--TTPLWRRNPEGQ-PLCNACGLFLKLHGVVRPLS   42 (43)
T ss_dssp             CCCSSSCCC--CCSCCEECTTSC-EECHHHHHHHHHHSSCCCCC
T ss_pred             CcCCccCCC--CCCccccCCCCC-cccHHHHHHHHHhCCCCCCC
Confidence            579999998  799999999996 99999999999999999975

>4gat_A Nitrogen regulatory protein AREA; DNA binding protein, transcription factor, zinc binding domain, complex (transcription regulation/DNA); HET: DNA; NMR {Emericella nidulans} SCOP: g.39.1.1 PDB: 5gat_A* 6gat_A* 7gat_A*

Probab=99.65  E-value=4.1e-17  Score=126.36  Aligned_cols=53  Identities=36%  Similarity=0.648  Sum_probs=46.7

Q ss_pred             ccccccccccccCCCccccCCCCCchhchHhhhhHHhcCCCCCCCcCCCccccccc
Q 017834          204 SRICQHCGISEKLTPAMRRGPAGPRTLCNACGLMWANKGTLRDLTKGARNICFEQH  259 (365)
Q Consensus       204 ~~~C~~Cg~t~~~TP~WRrGP~G~~tLCNACGl~~~~~~~~r~~~k~~~~i~~~q~  259 (365)
                      ...|+||+++  .||+||+||+|. +|||||||||++++++|+++.....|....+
T Consensus         9 ~~~C~~C~t~--~Tp~WR~gp~G~-~LCNaCGl~~~~~~~~RP~~~k~~~ik~R~R   61 (66)
T 4gat_A            9 PTTCTNCFTQ--TTPLWRRNPEGQ-PLCNACGLFLKLHGVVRPLSLKTDVIKKRNR   61 (66)
T ss_dssp             SCCCTTTCCC--CCSSCEEETTTE-EECHHHHHHHHHHCSCCCGGGCCSCCCCCCC
T ss_pred             CCCCCCCCCC--CCCcCCcCCCCC-CccHHHHHHHHHcCCCCchhhcccccccccc
Confidence            6799999998  699999999995 9999999999999999999987766654443

>2kae_A GATA-type transcription factor; zinc finger, GATA-type, DNA; NMR {Caenorhabditis elegans}

Probab=99.54  E-value=1.1e-15  Score=119.97  Aligned_cols=46  Identities=24%  Similarity=0.316  Sum_probs=40.0

Q ss_pred             ccccccccccccCCCccccCCCCCchhchHhhhhHHhcCCCCCCCcCC
Q 017834          204 SRICQHCGISEKLTPAMRRGPAGPRTLCNACGLMWANKGTLRDLTKGA  251 (365)
Q Consensus       204 ~~~C~~Cg~t~~~TP~WRrGP~G~~tLCNACGl~~~~~~~~r~~~k~~  251 (365)
                      ...|+||+++  .||+||+||.+..+|||||||||++++++|++....
T Consensus         8 ~~~C~nC~tt--~Tp~WRrg~~~~g~LCNACGl~~~~~~~~RP~~~~~   53 (71)
T 2kae_A            8 SFQCSNCSVT--ETIRWRNIRSKEGIQCNACFIYQRKYNKTRPVTAVN   53 (71)
T ss_dssp             CCCCSSSCCS--CCSSCCCCSSSSCCCSSHHHHHHHHHHSCCCTHHHH
T ss_pred             CCcCCccCCC--CCCccccCCCCCCccchHHHHHHHHhCCCCCcccch
Confidence            6899999998  699999954444499999999999999999987764

>4hc9_A Trans-acting T-cell-specific transcription factor; zinc finger, GATA transcription factor, DNA bridging, transc DNA complex; HET: DNA; 1.60A {Homo sapiens} PDB: 4hc7_A* 4hca_A* 3dfx_A* 3dfv_D* 2gat_A* 3gat_A* 1gat_A* 1gau_A* 1gnf_A 1y0j_A 2l6y_A 2l6z_A

Probab=99.49  E-value=8.8e-15  Score=124.09  Aligned_cols=55  Identities=29%  Similarity=0.550  Sum_probs=47.5

Q ss_pred             ccccccccccccCCCccccCCCCCchhchHhhhhHHhcCCCCCCCcCCCccccccccc
Q 017834          204 SRICQHCGISEKLTPAMRRGPAGPRTLCNACGLMWANKGTLRDLTKGARNICFEQHEL  261 (365)
Q Consensus       204 ~~~C~~Cg~t~~~TP~WRrGP~G~~tLCNACGl~~~~~~~~r~~~k~~~~i~~~q~~~  261 (365)
                      ...|+||+++  .||+||+||+| .+|||||||||++|++.|+++.....|....+.+
T Consensus        59 ~~~C~~C~t~--~tp~WRr~~~g-~~lCNaCgl~~~~~~~~rp~~~~~~~i~~r~r~~  113 (115)
T 4hc9_A           59 GTSCANCQTT--TTTLWRRNANG-DPVCNACGLYYKLHNINRPLTMKKEGIQTRNRKM  113 (115)
T ss_dssp             TCCCTTTCCS--CCSSCEECTTS-CEECHHHHHHHHHHSSCCCGGGCCSSCCCCC---
T ss_pred             cccCCCcCCC--CcceeEECCCC-CCcchHHHHHHHHhCCCCCccccccchhhccccc
Confidence            5799999998  69999999999 8999999999999999999998877776655543

>4hc9_A Trans-acting T-cell-specific transcription factor; zinc finger, GATA transcription factor, DNA bridging, transc DNA complex; HET: DNA; 1.60A {Homo sapiens} PDB: 4hc7_A* 4hca_A* 3dfx_A* 3dfv_D* 2gat_A* 3gat_A* 1gat_A* 1gau_A* 1gnf_A 1y0j_A 2l6y_A 2l6z_A

Probab=99.40  E-value=1.8e-13  Score=116.03  Aligned_cols=62  Identities=34%  Similarity=0.612  Sum_probs=48.6

Q ss_pred             ccccccccccccCCCccccCCCCCchhchHhhhhHHhcCCCCCCCcCCCcccccccccCCCCCCC
Q 017834          204 SRICQHCGISEKLTPAMRRGPAGPRTLCNACGLMWANKGTLRDLTKGARNICFEQHELETSSDIK  268 (365)
Q Consensus       204 ~~~C~~Cg~t~~~TP~WRrGP~G~~tLCNACGl~~~~~~~~r~~~k~~~~i~~~q~~~~~~~d~~  268 (365)
                      .+.|.|||++  .||+||+||.| .+|||||||||++++..|++.+.+..............++.
T Consensus         5 ~~~C~~Cg~~--~Tp~WRr~~~g-~~lCnaCgl~~Kl~G~nRP~~KpKKR~~~~~~~~~~C~~C~   66 (115)
T 4hc9_A            5 GRECVNCGAT--STPLWRRDGTG-HYLCNACGLYHKMNGQNRPLIKPKRRLSAARRAGTSCANCQ   66 (115)
T ss_dssp             -CCCTTTCCS--CCSSCEECTTS-CEECHHHHHHHHHHSSCCCCSSCCCCCCCCCCTTCCCTTTC
T ss_pred             CCCCCCCCCc--cCCcceECCCC-CCcCcchhhhhhhcccccccccccccccccccccccCCCcC
Confidence            6799999998  69999999999 79999999999999999998876654443333344444443

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	365
d1y0ja1	39	g.39.1.1 (A:200-238) Erythroid transcription facto	8e-11
d2vuti1	42	g.39.1.1 (I:671-712) Erythroid transcription facto	3e-10
d3gata_	66	g.39.1.1 (A:) Erythroid transcription factor GATA-	9e-09

>d1y0ja1 g.39.1.1 (A:200-238) Erythroid transcription factor GATA-1 {Mouse (Mus musculus) [TaxId: 10090]} Length = 39

class: Small proteins
fold: Glucocorticoid receptor-like (DNA-binding domain)
superfamily: Glucocorticoid receptor-like (DNA-binding domain)
family: Erythroid transcription factor GATA-1
domain: Erythroid transcription factor GATA-1
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 54.3 bits (131), Expect = 8e-11
 Identities = 17/39 (43%), Positives = 19/39 (48%), Gaps = 3/39 (7%)

Query: 205 RICQHCGISEKLTPAMRRGPAGPRTLCNACGLMWANKGT 243
           R C +CG +   TP  RR   G   LCNACGL     G 
Sbjct: 3   RECVNCGATA--TPLWRRDRTG-HYLCNACGLYHKMNGQ 38

>d2vuti1 g.39.1.1 (I:671-712) Erythroid transcription factor GATA-1 {Emericella nidulans [TaxId: 162425]} Length = 42

class: Small proteins
fold: Glucocorticoid receptor-like (DNA-binding domain)
superfamily: Glucocorticoid receptor-like (DNA-binding domain)
family: Erythroid transcription factor GATA-1
domain: Erythroid transcription factor GATA-1
species: Emericella nidulans [TaxId: 162425]

 Score = 52.9 bits (127), Expect = 3e-10
 Identities = 18/42 (42%), Positives = 22/42 (52%), Gaps = 3/42 (7%)

Query: 207 CQHCGISEKLTPAMRRGPAGPRTLCNACGLMWANKGTLRDLT 248
           C +C      TP  RR P G + LCNACGL     G +R L+
Sbjct: 3   CTNCFTQT--TPLWRRNPEG-QPLCNACGLFLKLHGVVRPLS 41

>d3gata_ g.39.1.1 (A:) Erythroid transcription factor GATA-1 {Chicken (Gallus gallus) [TaxId: 9031]} Length = 66

class: Small proteins
fold: Glucocorticoid receptor-like (DNA-binding domain)
superfamily: Glucocorticoid receptor-like (DNA-binding domain)
family: Erythroid transcription factor GATA-1
domain: Erythroid transcription factor GATA-1
species: Chicken (Gallus gallus) [TaxId: 9031]

 Score = 49.2 bits (117), Expect = 9e-09
 Identities = 18/50 (36%), Positives = 22/50 (44%), Gaps = 3/50 (6%)

Query: 205 RICQHCGISEKLTPAMRRGPAGPRTLCNACGLMWANKGTLRDLTKGARNI 254
            +C +C  S   T   RR P G   +CNACGL +      R LT     I
Sbjct: 5   TVCSNCQTST--TTLWRRSPMG-DPVCNACGLYYKLHQVNRPLTMRKDGI 51

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	365
d2vuti1	42	Erythroid transcription factor GATA-1 {Emericella	99.72
d3gata_	66	Erythroid transcription factor GATA-1 {Chicken (Ga	99.67
d1y0ja1	39	Erythroid transcription factor GATA-1 {Mouse (Mus	99.67

>d2vuti1 g.39.1.1 (I:671-712) Erythroid transcription factor GATA-1 {Emericella nidulans [TaxId: 162425]}

class: Small proteins
fold: Glucocorticoid receptor-like (DNA-binding domain)
superfamily: Glucocorticoid receptor-like (DNA-binding domain)
family: Erythroid transcription factor GATA-1
domain: Erythroid transcription factor GATA-1
species: Emericella nidulans [TaxId: 162425]

Probab=99.72  E-value=5.8e-19  Score=123.61  Aligned_cols=40  Identities=45%  Similarity=0.916  Sum_probs=37.9

Q ss_pred             ccccccccccCCCccccCCCCCchhchHhhhhHHhcCCCCCCC
Q 017834          206 ICQHCGISEKLTPAMRRGPAGPRTLCNACGLMWANKGTLRDLT  248 (365)
Q Consensus       206 ~C~~Cg~t~~~TP~WRrGP~G~~tLCNACGl~~~~~~~~r~~~  248 (365)
                      .|+||+++  +||+||+||+| ++|||||||||++++++||++
T Consensus         2 ~C~nC~tt--~Tp~WRr~~~G-~~lCNACGl~~k~~g~~RP~s   41 (42)
T d2vuti1           2 TCTNCFTQ--TTPLWRRNPEG-QPLCNACGLFLKLHGVVRPLS   41 (42)
T ss_dssp             CCSSSCCC--CCSCCEECTTS-CEECHHHHHHHHHHSSCCCCC
T ss_pred             cCCCCCCC--CCccceeCCCC-CCchhhhhHHHHHcCCCCCCC
Confidence            69999998  79999999999 799999999999999999976

>d3gata_ g.39.1.1 (A:) Erythroid transcription factor GATA-1 {Chicken (Gallus gallus) [TaxId: 9031]}

class: Small proteins
fold: Glucocorticoid receptor-like (DNA-binding domain)
superfamily: Glucocorticoid receptor-like (DNA-binding domain)
family: Erythroid transcription factor GATA-1
domain: Erythroid transcription factor GATA-1
species: Chicken (Gallus gallus) [TaxId: 9031]

Probab=99.67  E-value=1.4e-17  Score=127.06  Aligned_cols=52  Identities=35%  Similarity=0.625  Sum_probs=44.8

Q ss_pred             ccccccccccccCCCccccCCCCCchhchHhhhhHHhcCCCCCCCcCCCcccccc
Q 017834          204 SRICQHCGISEKLTPAMRRGPAGPRTLCNACGLMWANKGTLRDLTKGARNICFEQ  258 (365)
Q Consensus       204 ~~~C~~Cg~t~~~TP~WRrGP~G~~tLCNACGl~~~~~~~~r~~~k~~~~i~~~q  258 (365)
                      ...|+||+++  .||+||+||.| .+|||||||||++++..|++......|....
T Consensus         4 g~~C~nCgt~--~Tp~WRr~~~G-~~lCNACGl~~~~~~~~RP~~~~~~~i~~r~   55 (66)
T d3gata_           4 GTVCSNCQTS--TTTLWRRSPMG-DPVCNACGLYYKLHQVNRPLTMRKDGIQTRN   55 (66)
T ss_dssp             TCCCTTTCCC--CCSSEEECTTS-CEEEHHHHHHHHHHCSCCCGGGCCSSCCCCS
T ss_pred             CCCCCCCCCC--CCcccccCCCC-CcccchhHHHHHHhCCcCCcccccccccccc
Confidence            4689999998  79999999999 7999999999999999999887655554433

>d1y0ja1 g.39.1.1 (A:200-238) Erythroid transcription factor GATA-1 {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: Glucocorticoid receptor-like (DNA-binding domain)
superfamily: Glucocorticoid receptor-like (DNA-binding domain)
family: Erythroid transcription factor GATA-1
domain: Erythroid transcription factor GATA-1
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.67  E-value=5.9e-18  Score=116.74  Aligned_cols=37  Identities=46%  Similarity=0.918  Sum_probs=34.3

Q ss_pred             ccccccccccccCCCccccCCCCCchhchHhhhhHHhcCC
Q 017834          204 SRICQHCGISEKLTPAMRRGPAGPRTLCNACGLMWANKGT  243 (365)
Q Consensus       204 ~~~C~~Cg~t~~~TP~WRrGP~G~~tLCNACGl~~~~~~~  243 (365)
                      .+.|+||+++  .||+||+||+| ++|||||||||++||+
T Consensus         2 ~r~C~~Cgtt--~Tp~WR~gp~G-~~LCNACGl~~r~~G~   38 (39)
T d1y0ja1           2 ARECVNCGAT--ATPLWRRDRTG-HYLCNACGLYHKMNGQ   38 (39)
T ss_dssp             CCCCSSSCCC--CCSCCEECTTS-CEECSSHHHHHHHSCC
T ss_pred             cCCCCCCCCC--CCcccccCCCC-CEeeHHhHHHHHHhCC
Confidence            4689999998  69999999999 7999999999999986